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Add t-SNE embeddings and clusters #88

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Add t-SNE embeddings and clusters #88

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Commits on Aug 28, 2024

  1. Add t-SNE embeddings and clusters 

    Adds rules, scripts, and config to produce joint t-SNE embeddings per
build from all gene segments and find clusters from the resulting
embeddings. When the user defines the `embedding` key in their build
config, the workflow produces pairwise distances per gene segment, runs
t-SNE on those distances, finds clusters with HDBSCAN, and exports the
embedding coordinates and clusters in the Auspice JSON.
    @huddlej
    huddlej committed Aug 28, 2024
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