You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Sequences counts for clades/lineages that are earlier than their first appearance date should be excluded.
Two potential solutions
Use ncov 's exclude.txt to exclude known outliers from the counts. However, this only captures a subset of outliers because the exclude.txt only gets updated based on the results of small subsampled trees.
Similar to covariants, add a list of first dates for clades/lineages and automatically exclude counts earlier than the first date.
The text was updated successfully, but these errors were encountered:
Context
@marlinfiggins flagged there is an issue in all-time the analysis where there are JN.1 sequences from 2020 during the forecasts-ncov meeting on 2024-06-03
Description
Sequences counts for clades/lineages that are earlier than their first appearance date should be excluded.
Two potential solutions
The text was updated successfully, but these errors were encountered: