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chore: release 2024-04-25--01-03-07Z
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Updated datasets:

- SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
- SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
- SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
- SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
- SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
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nextstrain-bot committed Apr 25, 2024
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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md
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## Unreleased
## 2024-04-25T01:03:07Z

- fix: Increase Nextclade alignment parameter "excessBandwidth" from 9 to 12 to correctly align complex series of indels that has arisen in Spike NTD with the occurrence of S:31- in some JN.1. The bandwidth is chosen to be as small as possible (to ensure fast runtime) but as large as necessary for correct alignment. As a result, occasional adjustments like here are required. Nothing else is changed in this SARS-CoV-2 dataset update.

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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md
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## Unreleased
## 2024-04-25T01:03:07Z

- fix: Increase Nextclade alignment parameter "excessBandwidth" from 9 to 12 to correctly align complex series of indels that has arisen in Spike NTD with the occurrence of S:31- in some JN.1. The bandwidth is chosen to be as small as possible (to ensure fast runtime) but as large as necessary for correct alignment. As a result, occasional adjustments like here are required. Nothing else is changed in this SARS-CoV-2 dataset update.

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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/XBB/CHANGELOG.md
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## Unreleased
## 2024-04-25T01:03:07Z

- fix: Increase Nextclade alignment parameter "excessBandwidth" from 9 to 12 to correctly align complex series of indels that has arisen in Spike NTD with the occurrence of S:31- in some JN.1. The bandwidth is chosen to be as small as possible (to ensure fast runtime) but as large as necessary for correct alignment. As a result, occasional adjustments like here are required. Nothing else is changed in this SARS-CoV-2 dataset update.

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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md
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## Unreleased
## 2024-04-25T01:03:07Z

- fix: Increase Nextclade alignment parameter "excessBandwidth" from 9 to 12 to correctly align complex series of indels that has arisen in Spike NTD with the occurrence of S:31- in some JN.1. The bandwidth is chosen to be as small as possible (to ensure fast runtime) but as large as necessary for correct alignment. As a result, occasional adjustments like here are required. Nothing else is changed in this SARS-CoV-2 dataset update.

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2 changes: 1 addition & 1 deletion data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md
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## Unreleased
## 2024-04-25T01:03:07Z

- fix: Increase Nextclade alignment parameter "excessBandwidth" from 9 to 12 to correctly align complex series of indels that has arisen in Spike NTD with the occurrence of S:31- in some JN.1. The bandwidth is chosen to be as small as possible (to ensure fast runtime) but as large as necessary for correct alignment. As a result, occasional adjustments like here are required. Nothing else is changed in this SARS-CoV-2 dataset update.

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30 changes: 20 additions & 10 deletions data_output/index.json
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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},
"versions": [
{
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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}
],
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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2 changes: 1 addition & 1 deletion ...ars-cov-2/BA.2.86/unreleased/CHANGELOG.md → ...A.2.86/2024-04-25--01-03-07Z/CHANGELOG.md
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## Unreleased
## 2024-04-25T01:03:07Z

- fix: Increase Nextclade alignment parameter "excessBandwidth" from 9 to 12 to correctly align complex series of indels that has arisen in Spike NTD with the occurrence of S:31- in some JN.1. The bandwidth is chosen to be as small as possible (to ensure fast runtime) but as large as necessary for correct alignment. As a result, occasional adjustments like here are required. Nothing else is changed in this SARS-CoV-2 dataset update.

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3 changes: 2 additions & 1 deletion ...rs-cov-2/BA.2.86/unreleased/pathogen.json → ....2.86/2024-04-25--01-03-07Z/pathogen.json
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},
"schemaVersion": "3.0.0",
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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2 changes: 1 addition & 1 deletion ...n/sars-cov-2/BA.2/unreleased/CHANGELOG.md → ...2/BA.2/2024-04-25--01-03-07Z/CHANGELOG.md
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## Unreleased
## 2024-04-25T01:03:07Z

- fix: Increase Nextclade alignment parameter "excessBandwidth" from 9 to 12 to correctly align complex series of indels that has arisen in Spike NTD with the occurrence of S:31- in some JN.1. The bandwidth is chosen to be as small as possible (to ensure fast runtime) but as large as necessary for correct alignment. As a result, occasional adjustments like here are required. Nothing else is changed in this SARS-CoV-2 dataset update.

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},
"schemaVersion": "3.0.0",
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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2 changes: 1 addition & 1 deletion ...in/sars-cov-2/XBB/unreleased/CHANGELOG.md → ...-2/XBB/2024-04-25--01-03-07Z/CHANGELOG.md
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## Unreleased
## 2024-04-25T01:03:07Z

- fix: Increase Nextclade alignment parameter "excessBandwidth" from 9 to 12 to correctly align complex series of indels that has arisen in Spike NTD with the occurrence of S:31- in some JN.1. The bandwidth is chosen to be as small as possible (to ensure fast runtime) but as large as necessary for correct alignment. As a result, occasional adjustments like here are required. Nothing else is changed in this SARS-CoV-2 dataset update.

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},
"schemaVersion": "3.0.0",
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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2 changes: 1 addition & 1 deletion ...2/wuhan-hu-1/orfs/unreleased/CHANGELOG.md → ...1/orfs/2024-04-25--01-03-07Z/CHANGELOG.md
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## Unreleased
## 2024-04-25T01:03:07Z

- fix: Increase Nextclade alignment parameter "excessBandwidth" from 9 to 12 to correctly align complex series of indels that has arisen in Spike NTD with the occurrence of S:31- in some JN.1. The bandwidth is chosen to be as small as possible (to ensure fast runtime) but as large as necessary for correct alignment. As a result, occasional adjustments like here are required. Nothing else is changed in this SARS-CoV-2 dataset update.

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},
"schemaVersion": "3.0.0",
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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2 changes: 1 addition & 1 deletion ...han-hu-1/proteins/unreleased/CHANGELOG.md → ...oteins/2024-04-25--01-03-07Z/CHANGELOG.md
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## Unreleased
## 2024-04-25T01:03:07Z

- fix: Increase Nextclade alignment parameter "excessBandwidth" from 9 to 12 to correctly align complex series of indels that has arisen in Spike NTD with the occurrence of S:31- in some JN.1. The bandwidth is chosen to be as small as possible (to ensure fast runtime) but as large as necessary for correct alignment. As a result, occasional adjustments like here are required. Nothing else is changed in this SARS-CoV-2 dataset update.

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},
"schemaVersion": "3.0.0",
"version": {
"tag": "unreleased",
"updatedAt": "2024-04-25T01:03:07Z",
"tag": "2024-04-25--01-03-07Z",
"compatibility": {
"cli": "3.0.0-alpha.0",
"web": "3.0.0-alpha.0"
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