Merge pull request #216 from nextstrain/sc2-2024-07

Update SC2 datasets
nextstrain · Jul 17, 2024 · 8592062 · 8592062
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diff --git a/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md b/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md
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+## Unreleased
+
+- Include newly designated Nextstrain clade 24C (KP.3)
+- All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
+
+<details>
+  <summary> Newly included lineages, with designation date in parentheses</summary>
+
+- BA.2.86.7 (2024-06-13)
+- XDZ (2024-06-14)
+- JN.1.1.10 (2024-06-14)
+- JN.1.63 (2024-06-14)
+- JN.1.63.1 (2024-06-14)
+- XEA (2024-06-14)
+- XEB (2024-06-14)
+- XDP.2 (2024-06-14)
+- XDP.3 (2024-06-14)
+- LV.1 (2024-06-14)
+- LV.2 (2024-06-14)
+- LE.1.3 (2024-06-14)
+- LE.1.3.1 (2024-06-14)
+- JN.1.58.3 (2024-06-14)
+- KP.4.1.1 (2024-06-17)
+- KP.4.1.2 (2024-06-17)
+- KP.4.1.3 (2024-06-17)
+- LW.1 (2024-06-17)
+- LP.3 (2024-06-17)
+- KP.3.1.5 (2024-06-17)
+- KP.1.1.5 (2024-06-17)
+- XDD.3 (2024-06-29)
+- LF.3.1.1 (2024-06-29)
+- LB.1.3.1 (2024-06-29)
+- KP.2.3.4 (2024-06-29)
+- JN.1.18.6 (2024-06-29)
+- LY.2 (2024-06-29)
+- LY.1 (2024-06-29)
+- JN.1.18.7 (2024-06-29)
+- LZ.1 (2024-06-29)
+- LZ.1.1 (2024-06-29)
+- MA.1 (2024-06-29)
+- MB.1 (2024-06-29)
+- MB.1.1 (2024-06-29)
+- LP.1.1 (2024-06-29)
+- LF.4 (2024-06-29)
+- LF.4.1 (2024-06-29)
+- KP.3.3.1 (2024-06-29)
+- MC.1 (2024-06-29)
+- LU.2 (2024-07-01)
+- JN.1.64 (2024-07-01)
+- JN.1.64.1 (2024-07-01)
+- MD.1 (2024-07-01)
+- MD.1.1 (2024-07-01)
+- MD.2 (2024-07-01)
+- MD.3 (2024-07-01)
+- MD.3.1 (2024-07-01)
+- LK.2 (2024-07-03)
+- LK.2.1 (2024-07-03)
+- JN.1.7.8 (2024-07-03)
+- JN.1.50.2 (2024-07-03)
+- ME.1 (2024-07-03)
+- LF.5 (2024-07-10)
+- JN.1.48.3 (2024-07-10)
+- KS.1.3 (2024-07-10)
+- JN.1.65 (2024-07-10)
+- JN.1.65.1 (2024-07-10)
+- MF.1 (2024-07-10)
+- MF.2 (2024-07-10)
+- KP.3.3.2 (2024-07-10)
+- MG.1 (2024-07-10)
+- KP.4.2.3 (2024-07-10)
+- KP.2.17 (2024-07-10)
+- LB.1.3.2 (2024-07-10)
+- MH.1 (2024-07-10)
+- LB.1.8 (2024-07-10)
+- JN.1.7.9 (2024-07-10)
+- MJ.1 (2024-07-10)
+- KP.3.1.6 (2024-07-12)
+- MK.1 (2024-07-12)
+- MK.2 (2024-07-12)
+- KP.3.4.1 (2024-07-12)
+- KP.3.3.3 (2024-07-12)
+- ML.1 (2024-07-12)
+- ML.2 (2024-07-12)
+- MM.1 (2024-07-12)
+- MM.2 (2024-07-12)
+- JN.1.66 (2024-07-12)
+- MN.1 (2024-07-12)
+- KP.3.5 (2024-07-12)
+- LB.1.4.1 (2024-07-13)
+- LB.1.7.1 (2024-07-13)
+- LB.1.7.2 (2024-07-13)
+- LB.1.7.3 (2024-07-13)
+
+</details>
+
 ## 2024-07-03T08:29:55Z
 
 Added configuration of current and recent vaccine strains as 'reference nodes' on the reference tree, against which query sequences can be compared. This feature is in addition to the new 'compare to clade founder' feature, allowing to compare each query sequence to the most ancestral node of a clade or lineage.