From b17f4ba2f40dc4538ea955044754895720e3d169 Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Wed, 17 Jul 2024 12:57:10 +0000 Subject: [PATCH] chore: release 2024-07-17--12-57-03Z Updated datasets: - SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs) - SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins) - SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2) - SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB) - SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86) --- .../sars-cov-2/BA.2.86/CHANGELOG.md | 2 +- data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md | 2 +- data/nextstrain/sars-cov-2/XBB/CHANGELOG.md | 2 +- .../sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md | 2 +- .../wuhan-hu-1/proteins/CHANGELOG.md | 2 +- data_output/index.json | 30 ++++++++++++------ .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 7908493 -> 7908555 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 12693751 -> 12693813 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 8876786 -> 8876848 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 8578815 -> 8578877 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 .../CHANGELOG.md | 2 +- .../README.md | 0 .../dataset.zip | Bin 8601471 -> 8601533 bytes .../genome_annotation.gff3 | 0 .../pathogen.json | 3 +- .../reference.fasta | 0 .../sequences.fasta | 0 .../tree.json | 0 46 files changed, 40 insertions(+), 25 deletions(-) rename data_output/nextstrain/sars-cov-2/BA.2.86/{unreleased => 2024-07-17--12-57-03Z}/CHANGELOG.md (99%) rename data_output/nextstrain/sars-cov-2/BA.2.86/{unreleased => 2024-07-17--12-57-03Z}/README.md (100%) rename data_output/nextstrain/sars-cov-2/BA.2.86/{unreleased => 2024-07-17--12-57-03Z}/dataset.zip (99%) rename data_output/nextstrain/sars-cov-2/BA.2.86/{unreleased => 2024-07-17--12-57-03Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/sars-cov-2/BA.2.86/{unreleased => 2024-07-17--12-57-03Z}/pathogen.json (99%) rename data_output/nextstrain/sars-cov-2/BA.2.86/{unreleased => 2024-07-17--12-57-03Z}/reference.fasta (100%) rename data_output/nextstrain/sars-cov-2/BA.2.86/{unreleased => 2024-07-17--12-57-03Z}/sequences.fasta (100%) rename data_output/nextstrain/sars-cov-2/BA.2.86/{unreleased => 2024-07-17--12-57-03Z}/tree.json (100%) rename data_output/nextstrain/sars-cov-2/BA.2/{unreleased => 2024-07-17--12-57-03Z}/CHANGELOG.md (99%) rename data_output/nextstrain/sars-cov-2/BA.2/{unreleased => 2024-07-17--12-57-03Z}/README.md (100%) rename data_output/nextstrain/sars-cov-2/BA.2/{unreleased => 2024-07-17--12-57-03Z}/dataset.zip (99%) rename data_output/nextstrain/sars-cov-2/BA.2/{unreleased => 2024-07-17--12-57-03Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/sars-cov-2/BA.2/{unreleased => 2024-07-17--12-57-03Z}/pathogen.json (99%) rename data_output/nextstrain/sars-cov-2/BA.2/{unreleased => 2024-07-17--12-57-03Z}/reference.fasta (100%) rename data_output/nextstrain/sars-cov-2/BA.2/{unreleased => 2024-07-17--12-57-03Z}/sequences.fasta (100%) rename data_output/nextstrain/sars-cov-2/BA.2/{unreleased => 2024-07-17--12-57-03Z}/tree.json (100%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-07-17--12-57-03Z}/CHANGELOG.md (99%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-07-17--12-57-03Z}/README.md (100%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-07-17--12-57-03Z}/dataset.zip (99%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-07-17--12-57-03Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-07-17--12-57-03Z}/pathogen.json (99%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-07-17--12-57-03Z}/reference.fasta (100%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-07-17--12-57-03Z}/sequences.fasta (100%) rename data_output/nextstrain/sars-cov-2/XBB/{unreleased => 2024-07-17--12-57-03Z}/tree.json (100%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/{unreleased => 2024-07-17--12-57-03Z}/CHANGELOG.md (99%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/{unreleased => 2024-07-17--12-57-03Z}/README.md (100%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/{unreleased => 2024-07-17--12-57-03Z}/dataset.zip (99%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/{unreleased => 2024-07-17--12-57-03Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/{unreleased => 2024-07-17--12-57-03Z}/pathogen.json (99%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/{unreleased => 2024-07-17--12-57-03Z}/reference.fasta (100%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/{unreleased => 2024-07-17--12-57-03Z}/sequences.fasta (100%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/{unreleased => 2024-07-17--12-57-03Z}/tree.json (100%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/{unreleased => 2024-07-17--12-57-03Z}/CHANGELOG.md (99%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/{unreleased => 2024-07-17--12-57-03Z}/README.md (100%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/{unreleased => 2024-07-17--12-57-03Z}/dataset.zip (99%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/{unreleased => 2024-07-17--12-57-03Z}/genome_annotation.gff3 (100%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/{unreleased => 2024-07-17--12-57-03Z}/pathogen.json (99%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/{unreleased => 2024-07-17--12-57-03Z}/reference.fasta (100%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/{unreleased => 2024-07-17--12-57-03Z}/sequences.fasta (100%) rename data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/{unreleased => 2024-07-17--12-57-03Z}/tree.json (100%) diff --git a/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md b/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md index 25f15352..96e70035 100644 --- a/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md +++ b/data/nextstrain/sars-cov-2/BA.2.86/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-07-17T12:57:03Z - Include newly designated Nextstrain clade 24C (KP.3) - All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates diff --git a/data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md b/data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md index b89ddc77..e7ef816e 100644 --- a/data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md +++ b/data/nextstrain/sars-cov-2/BA.2/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-07-17T12:57:03Z - Include newly designated Nextstrain clade 24C (KP.3) - All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates diff --git a/data/nextstrain/sars-cov-2/XBB/CHANGELOG.md b/data/nextstrain/sars-cov-2/XBB/CHANGELOG.md index 25f15352..96e70035 100644 --- a/data/nextstrain/sars-cov-2/XBB/CHANGELOG.md +++ b/data/nextstrain/sars-cov-2/XBB/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-07-17T12:57:03Z - Include newly designated Nextstrain clade 24C (KP.3) - All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates diff --git a/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md b/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md index 491a160e..28d266fe 100644 --- a/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md +++ b/data/nextstrain/sars-cov-2/wuhan-hu-1/orfs/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-07-17T12:57:03Z - Include newly designated Nextstrain clade 24C (KP.3) - All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates diff --git a/data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md b/data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md index b2cab487..cb169f50 100644 --- a/data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md +++ b/data/nextstrain/sars-cov-2/wuhan-hu-1/proteins/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-07-17T12:57:03Z - Include newly designated Nextstrain clade 24C (KP.3) - All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates diff --git a/data_output/index.json b/data_output/index.json index 5644f3f6..708d3700 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -93,7 +93,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -149,7 +150,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -220,7 +222,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -276,7 +279,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -350,7 +354,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -406,7 +411,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -477,7 +483,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -533,7 +540,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -604,7 +612,8 @@ }, "versions": [ { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" @@ -660,7 +669,8 @@ } ], "version": { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/CHANGELOG.md b/data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/CHANGELOG.md similarity index 99% rename from data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/CHANGELOG.md rename to data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/CHANGELOG.md index 25f15352..96e70035 100644 --- a/data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-07-17T12:57:03Z - Include newly designated Nextstrain clade 24C (KP.3) - All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates diff --git a/data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/README.md b/data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/README.md similarity index 100% rename from data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/README.md rename to data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/README.md diff --git a/data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/dataset.zip b/data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/dataset.zip similarity index 99% rename from data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/dataset.zip rename to data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/dataset.zip index cb4223e9a027a3043336ac9853b4ecddc95189c1..2a248398aa848f7a0d76000e3c4bce4fd12e31bc 100644 GIT binary patch delta 742 zcmZwFOHUJF6vpvsi~MN~u)ioD-|1##tK z5_cr595%!R7X}k{1U4ju1zW#>i7S`>8x08wC;8<~PR@B3C(p-|pRNN$2I8(PkMyr9 zq+Pjh#|lVNMjp-fu1F#l?d^}%%%}W*pB~if)u5qj#;~TFA;S#Tjc*x$n&pw{J@@fv zmvsEKvE^t#y1bA|re{)-v|{>{^OltATpy*Rle1?>R8`Z}kfHMNs#kWv2^X?(0oiaP z2QqST5qZc*0WP5smr;Z(@Sqr1aSbK7jvFY27dKIca`;dI1%BMZZQMa6s&E(g5I{9l z)SwnYXwXrIdW6sb1C6*36Ja!=87*i<8zOjsc61<$PQ=iKZuB6IUi2Y>ehgp`LwJZ` zJi=p)U=(A>+<5{|@D$H5i76y8jps;V1}`v+mw1KOn8O>)<1OA{0q?PhC8V*84_Nu; zmBs$Ld>S|F*B23Y>{?-4G&p~lpAO9uYt0sgrKiCnT>1ZFnt3)H0c+b9rZaG2{kBEe WsU@u1O%Zl{x8^p5H``+irv3t4Be|3S delta 675 zcmX}qH%mhS7=__`6Wg`-UQ+D6msn$q8jZch8cpo6#d00Q(aHIOTfjw=K~eBO#8D7k z-JNuB^c5u^JRJBq<9T{}S6`rR$gB>C7yeEwoLN#fFNy@=S2)j(9;3z7)jwz|b=viM z&G`1dW6NQ4IqY}F?`CQD((7|yss;Cbd&{#g=D@b9GiY>&{?fTs5}|?`0SH78f)N4< zp$J1bA`povL?Z^Vh(kOQkccECBL%5QLpm~$i7aTKg${aTBL}(2Lp};nh$0lD1f?iL zIVw~U`9U%V8I}UFpLq5VhrP$ zz$B(H4J&3ai#g0=0gJF<3CpmR!J?z7U103QA$B$M?_PHhh zV3ZP%Y!)At6OUXgJ}9>yxggEI4>l6xA61B>gM>eQFUX^mM+^G5-P@JTAs$6^J K^q`j;nbr>#M$A|M diff --git a/data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/genome_annotation.gff3 b/data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/pathogen.json b/data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/pathogen.json similarity index 99% rename from data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/pathogen.json rename to data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/pathogen.json index 0bdab3a3..4680e99b 100644 --- a/data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/pathogen.json +++ b/data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/pathogen.json @@ -2690,7 +2690,8 @@ }, "schemaVersion": "3.0.0", "version": { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/reference.fasta b/data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/reference.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/reference.fasta rename to data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/reference.fasta diff --git a/data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/sequences.fasta b/data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/sequences.fasta rename to data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/sequences.fasta diff --git a/data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/tree.json b/data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/tree.json similarity index 100% rename from data_output/nextstrain/sars-cov-2/BA.2.86/unreleased/tree.json rename to data_output/nextstrain/sars-cov-2/BA.2.86/2024-07-17--12-57-03Z/tree.json diff --git a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/CHANGELOG.md b/data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/CHANGELOG.md similarity index 99% rename from data_output/nextstrain/sars-cov-2/BA.2/unreleased/CHANGELOG.md rename to data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/CHANGELOG.md index b89ddc77..e7ef816e 100644 --- a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-07-17T12:57:03Z - Include newly designated Nextstrain clade 24C (KP.3) - All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates diff --git a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/README.md b/data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/README.md similarity index 100% rename from data_output/nextstrain/sars-cov-2/BA.2/unreleased/README.md rename to data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/README.md diff --git a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/dataset.zip b/data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/dataset.zip similarity index 99% rename from data_output/nextstrain/sars-cov-2/BA.2/unreleased/dataset.zip rename to data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/dataset.zip index d95114f358e5cb3606552480cc25ca8cdecf7f03..fc6e9ca366c6c4cb26dc829c208d156e41811902 100644 GIT binary patch delta 1056 zcmZwG+f&S89LMqBZrf(JB7~IKb`k2gcDL5Do3gTsO@$mHhu9U-L2b?oQO>9ED{_d+ zsq7|M=lpJ6a-ng@jPVy3x86HUGiH3BdCfD=GvDuX@yvXFeQi?D4H#z)h61B%%f@#{)dXBRobAdhrB)1ki`4=*Ke*;5mYLftPrN z*LZ`sc!xo}4@PQbSC?iul2Wl>b}Ln>Qnz2WDtjF*gN``qr(cdq7)~DvjQ*SD(AKGl ymvjNyu1x$al>}smB3Eh+$Qg!@iZ;Plz9 zJ{kofE``VZB1f^a&|Ts*ReKEvU1=cbtMZlC`n(;E?|JGEUBAr{(Je$evu&T=r`MJH z^%kAJJ~5=v(&%*IAGTo)evJ%rD4;|VR7gf2sG&h$q#zaj&>v|SfPokUEe0bULogKa zKZaujMq(63V+?f2fF1^n#W;*dCMIAaCc%g-Ooj|oaPIRFgPtk*Cc#ao%iC1`yH+YM8J${Xp*``j^C5lnWCI4jS-;iN0to^k{Q)wOPh$W8 diff --git a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/genome_annotation.gff3 b/data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/sars-cov-2/BA.2/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/pathogen.json b/data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/pathogen.json similarity index 99% rename from data_output/nextstrain/sars-cov-2/BA.2/unreleased/pathogen.json rename to data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/pathogen.json index 753d0f1b..f98ac3c8 100644 --- a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/pathogen.json +++ b/data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/pathogen.json @@ -2690,7 +2690,8 @@ }, "schemaVersion": "3.0.0", "version": { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/reference.fasta b/data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/reference.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/BA.2/unreleased/reference.fasta rename to data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/reference.fasta diff --git a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/sequences.fasta b/data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/BA.2/unreleased/sequences.fasta rename to data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/sequences.fasta diff --git a/data_output/nextstrain/sars-cov-2/BA.2/unreleased/tree.json b/data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/tree.json similarity index 100% rename from data_output/nextstrain/sars-cov-2/BA.2/unreleased/tree.json rename to data_output/nextstrain/sars-cov-2/BA.2/2024-07-17--12-57-03Z/tree.json diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/CHANGELOG.md b/data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/CHANGELOG.md similarity index 99% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/CHANGELOG.md rename to data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/CHANGELOG.md index 25f15352..96e70035 100644 --- a/data_output/nextstrain/sars-cov-2/XBB/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-07-17T12:57:03Z - Include newly designated Nextstrain clade 24C (KP.3) - All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/README.md b/data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/README.md similarity index 100% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/README.md rename to data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/README.md diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/dataset.zip b/data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/dataset.zip similarity index 99% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/dataset.zip rename to data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/dataset.zip index 58b656352b4d4cdf643b3c5e7b0955cfe0d310f9..83fc1f3d512fb4e80efef2d33dbe5e34551dae9d 100644 GIT binary patch delta 803 zcmZwF%TE(g6vy$Iwt`auu~tP(u}po#Ks!)Ir&_F~7A-HeiZ8UqVts%zwW#<&QSmNZ zYBH+^W8ARQxX_IYHZE8hx2|<<{0sax8V!jj`Q#)w=bXjO@8`F&>&^GFD?XHVy1dfw zYL*t2{*QKxBvsV#nCOiUq>_DuskVuHFc{E7dZ!jLw6Kv0>t@6-Lmj8z8gntXd+F=A zKkJeF*>|5}UzUn7{U=8 z#W7@X949c0lQ@OSKcB%_jNly3Ba0kHaRGUZ;UWsSgv+>ss~E=wuHiZ+VWEf{C}9dW zaSOLGjXSuDd$^AoJitTD;t?L>3Fh$h{emK16_meOwKJAT%Zv6)OLRHX(dQ%42K$F4 t>V5xG>5*#xWW3T|%O7lCQJ4;C-X1QBs6+PJFX-|!`*Tq=R!v)isb5H+5Xk@l delta 778 zcmYMyOHUJF6vpwlFhvnHHvsCbfJPI7Wi&gOadb5Z&AV^L}8Pn0Uv;!o9y z>155=^F|?xDj9Zk#gg&Pp1yc!A`=X1Lpf6)*VC4sc^@l8RsU2&VI}1eE2$4(qu;*x zCeztKSPSG=w*pP7rY*c^t&vXEffAHLffHp|gS9A!iV9T1g(|Fr8|&eL7uDDRA2wnW zia$2Pk6LWOR&0ZYIs_0zJ+@;98n6?)up5nN!XAXM7yGau2XGLFa2U;K!4Vuq7!e%9 zaYWIIHpI}54xB(IP9lyjoI*De=s_=%=tDnF;|vBch#{QCIh@BZF5n_A;W9>$!WE=( z6{E;N$2DYe9XD_jV;IK-a=3-tFkr&MB=Wd}ySRrb+{Xhv#3MY$G@f7vPw@=1C}3{c zsmj@G`D*O!c|#@~%l3CeHY>4+5DTd`pB*x#+y6go9^v{M*kW69ytRi-87}$w+J0%u oi0hNrD=gi}>$y?gvfr4}XTSP9;;#62v*hTtt1MYt7BM8V-^K2_X8-^I diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/genome_annotation.gff3 b/data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/pathogen.json b/data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/pathogen.json similarity index 99% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/pathogen.json rename to data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/pathogen.json index 6b296214..f0fec853 100644 --- a/data_output/nextstrain/sars-cov-2/XBB/unreleased/pathogen.json +++ b/data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/pathogen.json @@ -2690,7 +2690,8 @@ }, "schemaVersion": "3.0.0", "version": { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/reference.fasta b/data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/reference.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/reference.fasta rename to data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/reference.fasta diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/sequences.fasta b/data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/sequences.fasta rename to data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/sequences.fasta diff --git a/data_output/nextstrain/sars-cov-2/XBB/unreleased/tree.json b/data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/tree.json similarity index 100% rename from data_output/nextstrain/sars-cov-2/XBB/unreleased/tree.json rename to data_output/nextstrain/sars-cov-2/XBB/2024-07-17--12-57-03Z/tree.json diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/CHANGELOG.md b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/CHANGELOG.md similarity index 99% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/CHANGELOG.md rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/CHANGELOG.md index 491a160e..28d266fe 100644 --- a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-07-17T12:57:03Z - Include newly designated Nextstrain clade 24C (KP.3) - All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/README.md b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/README.md similarity index 100% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/README.md rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/README.md diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/dataset.zip b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/dataset.zip similarity index 99% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/dataset.zip rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/dataset.zip index cb51624243709ee13690bd72ca7e2dfc9a858ca5..c650e8a10f06f8c50a10b49249e690e0bd048911 100644 GIT binary patch delta 781 zcmZwFy-!nN6vy#K$NU zWVovX6N!UyaB^@pk%bu&hIS+2A87E~KuAnH$tNdya?Tl^{Eq&tn}2Svn*%-J40EAy zT;;;X;K9C8BM52PJhrw6xWt(s zr?x~P^?k^{^E_8)00|NdjZA|Sp__Rt6)1$_LPfo1`gfEs0&vvJ|LKFh|L zR_>e@j*C8k%;?4zZE6QC{1EkLYSET8YYE1JJMD;jq!qSly&gX<7_Ok3{N zES8B{BrtKb^ zy-+JH7j+_3P(y<{XmJQS=y4eJFu;fg9DxaqXu?sLaSY8kjuy1y1T3)PB-+pp8#-Wz z1E+8rXK)th(24WtLN|KQi#}YyMf76;gK)wHH!k5aJQ#u(K3u_7_#xpM0=SMKh7m#- zBe;PGMsX8Sj3I_wxQ#owi#YD#J|5s99^o;b;3>xO3=>FT63>xD3R9TI3(VjpULlPP zvY5qdyuloD$fJOHEMO6DQN%mE#}Yo^BR=8tW>F_wf9Y$(QofYsh`6cjmt~juL$O!n sPD^b^Y{~e4i`DolO3GA4_J~epts;9xzw(<Px# diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/genome_annotation.gff3 b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/pathogen.json b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/pathogen.json similarity index 99% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/pathogen.json rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/pathogen.json index 7971e503..99c86b68 100644 --- a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/pathogen.json +++ b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/pathogen.json @@ -2690,7 +2690,8 @@ }, "schemaVersion": "3.0.0", "version": { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/reference.fasta b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/reference.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/reference.fasta rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/reference.fasta diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/sequences.fasta b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/sequences.fasta rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/sequences.fasta diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/tree.json b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/tree.json similarity index 100% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/unreleased/tree.json rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/orfs/2024-07-17--12-57-03Z/tree.json diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/CHANGELOG.md b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/CHANGELOG.md similarity index 99% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/CHANGELOG.md rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/CHANGELOG.md index b2cab487..cb169f50 100644 --- a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/CHANGELOG.md +++ b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/CHANGELOG.md @@ -1,4 +1,4 @@ -## Unreleased +## 2024-07-17T12:57:03Z - Include newly designated Nextstrain clade 24C (KP.3) - All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/README.md b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/README.md similarity index 100% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/README.md rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/README.md diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/dataset.zip b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/dataset.zip similarity index 99% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/dataset.zip rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/dataset.zip index 9e9683a9176277cc20fb73015be5f2c072f2abe7..7368dffeeae692a3f89ec9d220a932232814313e 100644 GIT binary patch delta 779 zcmZwFOHUJF6vpuxsKp|MiU=y8!_*rs1MNT=JHXTmrDzeVB3=-oIEczc#G+gUorN3r z^8sLC*bx@2*bx%hxbPDgmxd2OV#I%=AtB);zntXFIcM?a+5fZT*xX-oM3aeZN0IQa zDunfkt$}ZTLCDDCvAHeU5s$TZ#;Zq7uUAq7YMm0$l%UoXRP~Ui2WlU$X--%6*o2m4m8BNQ&Bpr#}HoNC0=0|BN)XPUSk|@FoCy7V-oN1 z9#fdc3}!Khd3?YE7V#0EHgWvRzlpf6~n3*!?tNym8A#yBZKb$Y0k72 f@wffOuyk?9{%Kf^;8)f>2CKQR$+|Ej2p^CZ$Ds5S36+MAN*6V4#*4N};Q0b{6Uk`?GM@ zxN_&TXw|YAZR>Y%)1sL^fcj^2cxQg|%)Ij~pI@h0?deHY+Y%0HwB^G2Sq1O5G4NXw zgq&iYo!#D$-`CskcPz&3cFXY6a$+G7TS>(Cy@ykJlPeQS?ukP3M_KgfPiZPPYjay{ z>3nHZl0;mB23lN(4h1NL9!0oGK`20yyd zg8+i)MIS=wM;HSb#B&T`7%wn_QH)_66PUzHL@ZyI%i^0%wPZj diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/genome_annotation.gff3 b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/genome_annotation.gff3 similarity index 100% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/genome_annotation.gff3 rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/genome_annotation.gff3 diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/pathogen.json b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/pathogen.json similarity index 99% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/pathogen.json rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/pathogen.json index 92d60c86..171927c6 100644 --- a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/pathogen.json +++ b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/pathogen.json @@ -2690,7 +2690,8 @@ }, "schemaVersion": "3.0.0", "version": { - "tag": "unreleased", + "updatedAt": "2024-07-17T12:57:03Z", + "tag": "2024-07-17--12-57-03Z", "compatibility": { "cli": "3.0.0-alpha.0", "web": "3.0.0-alpha.0" diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/reference.fasta b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/reference.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/reference.fasta rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/reference.fasta diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/sequences.fasta b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/sequences.fasta similarity index 100% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/sequences.fasta rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/sequences.fasta diff --git a/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/tree.json b/data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/tree.json similarity index 100% rename from data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/unreleased/tree.json rename to data_output/nextstrain/sars-cov-2/wuhan-hu-1/proteins/2024-07-17--12-57-03Z/tree.json