From 3476fc885e6a34bdde9bd0c5e77d0cba7f44f6dd Mon Sep 17 00:00:00 2001 From: Richard Neher Date: Wed, 13 Mar 2024 16:30:37 +0100 Subject: [PATCH 1/2] data: initial commit of neherlab/HIV-1 dataset --- data/community/neherlab/hiv-1/CHANGELOG.md | 3 + data/community/neherlab/hiv-1/README.md | 35 + .../neherlab/hiv-1/genome_annotation.gff3 | 27 + data/community/neherlab/hiv-1/pathogen.json | 70 + data/community/neherlab/hiv-1/reference.fasta | 155 + data/community/neherlab/hiv-1/sequences.fasta | 4803 +++++++++++++++++ data/community/neherlab/hiv-1/tree.json | 1 + 7 files changed, 5094 insertions(+) create mode 100644 data/community/neherlab/hiv-1/CHANGELOG.md create mode 100644 data/community/neherlab/hiv-1/README.md create mode 100644 data/community/neherlab/hiv-1/genome_annotation.gff3 create mode 100644 data/community/neherlab/hiv-1/pathogen.json create mode 100644 data/community/neherlab/hiv-1/reference.fasta create mode 100644 data/community/neherlab/hiv-1/sequences.fasta create mode 100644 data/community/neherlab/hiv-1/tree.json diff --git a/data/community/neherlab/hiv-1/CHANGELOG.md b/data/community/neherlab/hiv-1/CHANGELOG.md new file mode 100644 index 00000000..1f43c256 --- /dev/null +++ b/data/community/neherlab/hiv-1/CHANGELOG.md @@ -0,0 +1,3 @@ +## Unreleased + +Initial release of an HIV-1 dataset for subtype classification. diff --git a/data/community/neherlab/hiv-1/README.md b/data/community/neherlab/hiv-1/README.md new file mode 100644 index 00000000..8d86ad0e --- /dev/null +++ b/data/community/neherlab/hiv-1/README.md @@ -0,0 +1,35 @@ +# EXPERIMENTAL: HIV-1 group M subtype and CRF classification + +| Key | Value | +| ---------------------- | --------------------------------------------------------------------------------------------------------------------| +| authors | [Richard Neher (U Basel)](https://neherlab.org), [Thomas Leitner (LANL)](https://public.lanl.gov/tkl/) | +| data source | LANL database and Genbank | +| workflow | [github.com/neherlab/HIV-nextclade](https://github.com/neherlab/HIV-nextclade) | +| nextclade dataset path | neherlab/HIV-1 | +| reference | [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) | + +This Nextclade data set aligns sequences to the HXB2 reference and finds the closest match in a reference tree build from the [2021 Super filtered Alignment](https://www.hiv.lanl.gov/content/sequence/NEWALIGN/help.html#filter) provided by LANL. +Due to extensive recombination in HIV-1 group M, the tree is not a proper phylogenetic tree, but a collection of trees inferred for each subtype or recombinant form. These individuals trees are then grafted together. Rare CRFs, URFs, or subtypes represented less then 3 times in the reference alignment are labeled as subtype `other`. + +Note that the classification is **EXPERIMENTAL** and might be unreliable for sequences that lack a close representative in the tree. +The closeness to sequences in the reference set is quantified by the `private mutations` +As a general guide, the more private mutations a sequence has, the less reliable the subtype assignment will be. + +Note that alignments of sequences that are far from the subtype B HXB2 reference will have + +## Reference sequence HXB2 (NC_001802) + +This data set uses the NCBI reference sequence [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) based on the HXB2 genome [K03455](https://www.ncbi.nlm.nih.gov/nuccore/K03455.1). The primary reason for choosing it is to ensure amino acid substitutions in conserved proteins such as `Pol` are numbered consistently. +Note that this sequence as a few problems, including a premature stop-codon in `nef`. + +## Treatment of indel-rich regions + +There are multiple regions in the HIV-1 genome where deletions and insertions are common. Such regions are often not consistently aligned when aligning sequences individually to a reference. For the purposes of finding closely matching sequences in the reference tree, these regions are ignored. Specifically, tree placement ignores + + - The LTR before the beginning of `gag` (until position 336 in `NC_001802`) + - Positions 5780 until 5870 at the end of `vpu` and the beginning of `gp120` + - Positions 6160 until 6240 in `gp120`. + - Position 6940 unitl 7020 in `gp120`. + - The 5' LTR from end of `nef` (positions 9863 until the end of the genome) + + diff --git a/data/community/neherlab/hiv-1/genome_annotation.gff3 b/data/community/neherlab/hiv-1/genome_annotation.gff3 new file mode 100644 index 00000000..cceefa4f --- /dev/null +++ b/data/community/neherlab/hiv-1/genome_annotation.gff3 @@ -0,0 +1,27 @@ +##gff-version 3 +#!gff-spec-version 1.21 +#!processor NCBI annotwriter +##sequence-region NC_001802.1 1 9181 +##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=11676 +NC_001802.1 RefSeq region 1 9181 . + . ID=NC_001802.1:1..9181;Dbxref=taxon:11676;gb-acronym=HIV-1;gbkey=Src;genome=genomic;mol_type=genomic RNA;note=strain for reference annotation +NC_001802.1 RefSeq CDS 1799 2095 . + . Name=pro;gbkey=Prot;protein_id=NP_705926.1;product=aspartic peptidase;ID=id-NP_057849.4:489..587;experiment=DESCRIPTION:[PMID:2537531],DESCRIPTION:[PMID:2548279],DESCRIPTION:[PMID:3290901];Note=The proteinase domain of Gag-Pol (in the form of homodimer) mediates all the cleavages in the polyprotein. Cleaves itself from the polyprotein late in particle assembly. +NC_001802.1 RefSeq CDS 2096 3775 . + . Name=RT-p66;gbkey=Prot;product=p66 subunit;protein_id=NP_705927.1;ID=id-NP_057849.4:588..1147;experiment=DESCRIPTION:[PMID:1374166],EXISTENCE:[PMID:4316300];Note=transcribes single stranded viral RNA genome into double stranded proviral DNA%3B HIV-1 reverse transcriptase is composed of the p66 subunit (this protein) and the p51 subunit that lacks the RNAse H domain of the larger subunit +NC_001802.1 RefSeq CDS 2096 3415 . + . Name=RT-p51;gbkey=Prot;protein_id=NP_789739.1;ID=id-NP_057849.4:588..1027;product=reverse transcriptase p51 subunit;Note=HIV-1 reverse transcriptase is composed of the p66 subunit and the p51 subunit (this protein) that lacks the RNAse H domain of the larger subunit +NC_001802.1 RefSeq CDS 3776 4639 . + . Name=INT;gbkey=Prot;product=integrase;protein_id=NP_705928.1;ID=id-NP_057849.4:1148..1435;experiment=DESCRIPTION:[PMID:7983732],DESCRIPTION:[PMID:8035478];Note=mediates integration of the viral DNA into the infected cell chromosome +NC_001802.1 RefSeq CDS 336 731 . + . Name=p17;gbkey=Prot;product=matrix;protein_id=NP_579876.2;ID=id-NP_057850.1:1..132;experiment=DESCRIPTION:[PMID:12032547],DESCRIPTION:[PMID:1710290],DESCRIPTION:[PMID:8610175];Note=viral structural protein%3B forms the outer structural shell of HIV-1 virions%3B involved in the nuclear import of the HIV-1 preintegration complex +NC_001802.1 RefSeq CDS 732 1424 . + . Name=p24;gbkey=Prot;product=capsid;protein_id=NP_579880.1;ID=id-NP_057850.1:133..363;Note=viral structural protein%3B forms the core of HIV-1 virions;experiment=DESCRIPTION:[PMID:15208690],DESCRIPTION:[PMID:16041386],DESCRIPTION:[PMID:21248851] +NC_001802.1 RefSeq CDS 1425 1466 . + . Name=p2;product=p2;gbkey=Prot;protein_id=NP_579882.1;ID=id-NP_057850.1:364..377;Note=Processing of Gag-Pol by the protease domain dimer starts with cleavage between the p2 and nucleocapsid proteins. +NC_001802.1 RefSeq CDS 1467 1631 . + . Name=p7;gbkey=Prot;protein_id=NP_579881.1;product=nucleocapsid;ID=id-NP_057850.1:378..432;experiment=DESCRIPTION:[PMID:1639074],DESCRIPTION:[PMID:7666546];Note=viral structural protein%3B coats the genomic RNA inside the virion core%3B binds and delivers full-length viral RNAs into assembling HIV-1 virions +NC_001802.1 RefSeq CDS 1632 1679 . + . Name=p1;product=p1;gbkey=Prot;protein_id=NP_787042.1;ID=id-NP_057850.1:433..448;Note=important for virus infectivity%2C protein processing%2C and genomic RNA dimer stability +NC_001802.1 RefSeq CDS 1680 1835 . + . Name=p6;product=p6;gbkey=Prot;protein_id=NP_579883.1;ID=id-NP_057850.1:449..500;experiment=DESCRIPTION:[PMID:10085158],DESCRIPTION:[PMID:15527852];Note=important for incorporation of Vpr into assembling HIV-1 virions%3B helps mediate efficient virus particle release from infected cells +NC_001802.1 RefSeq CDS 4587 5165 . + 0 Name=vif;gbkey=CDS;gene=vif;product=Vif;locus_tag=HIV1gp3;protein_id=NP_057851.1;ID=cds-NP_057851.1;Dbxref=GenBank:NP_057851.1,GeneID:155459 +NC_001802.1 RefSeq CDS 5105 5319 . + 0 Name=vpr;gbkey=CDS;gene=vpr;product=Vpr;locus_tag=HIV1gp4;protein_id=NP_057852.2;ID=cds-NP_057852.2;exception=artificial frameshift;Dbxref=GenBank:NP_057852.2,GeneID:155807;Note=An artificial frameshift eliminating the orf-disrupting nucleotide at position 5320 is introduced to obtain the typical HIV-1 Vpr protein sequence. For this particular HIV-1 strain%2C HXB2%2C only a short (78 amino acid long) variant of the Vpr sequence can be obtained by translation of nucleotides 5105 through 5341 without the frameshift +NC_001802.1 RefSeq CDS 5321 5396 . + 1 Name=vpr;gbkey=CDS;gene=vpr;product=Vpr;locus_tag=HIV1gp4;protein_id=NP_057852.2;ID=cds-NP_057852.2;exception=artificial frameshift;Dbxref=GenBank:NP_057852.2,GeneID:155807;Note=An artificial frameshift eliminating the orf-disrupting nucleotide at position 5320 is introduced to obtain the typical HIV-1 Vpr protein sequence. For this particular HIV-1 strain%2C HXB2%2C only a short (78 amino acid long) variant of the Vpr sequence can be obtained by translation of nucleotides 5105 through 5341 without the frameshift +NC_001802.1 RefSeq CDS 5377 5591 . + 0 Name=tat;gbkey=CDS;gene=tat;product=Tat;locus_tag=HIV1gp5;protein_id=NP_057853.1;ID=cds-NP_057853.1;Dbxref=GenBank:NP_057853.1,GeneID:155871;Note=the length of Tat varies depending on virus strain or clade +NC_001802.1 RefSeq CDS 7925 7970 . + 1 Name=tat;gbkey=CDS;gene=tat;product=Tat;locus_tag=HIV1gp5;protein_id=NP_057853.1;ID=cds-NP_057853.1;Dbxref=GenBank:NP_057853.1,GeneID:155871;Note=the length of Tat varies depending on virus strain or clade +NC_001802.1 RefSeq CDS 5516 5591 . + 0 Name=rev;gbkey=CDS;gene=rev;product=Rev;locus_tag=HIV1gp6;protein_id=NP_057854.1;ID=cds-NP_057854.1;Dbxref=GenBank:NP_057854.1,GeneID:155908 +NC_001802.1 RefSeq CDS 7925 8199 . + 2 Name=rev;gbkey=CDS;gene=rev;product=Rev;locus_tag=HIV1gp6;protein_id=NP_057854.1;ID=cds-NP_057854.1;Dbxref=GenBank:NP_057854.1,GeneID:155908 +NC_001802.1 RefSeq CDS 5608 5856 . + 0 Name=vpu;gbkey=CDS;gene=vpu;product=Vpu;locus_tag=HIV1gp7;protein_id=NP_057855.1;ID=cds-NP_057855.1;Dbxref=GenBank:NP_057855.1,GeneID:155945;Note=Vpu and gp160 are translated from different reading frames of the same bicistronic mRNA +NC_001802.1 RefSeq CDS 5855 7303 . + . Name=gp120;gbkey=Prot;protein_id=NP_579894.2;ID=id-NP_057856.1:29..511;experiment=DESCRIPTION:[PMID:24179160];product=Envelope surface glycoprotein gp120;Note=mediates binding of HIV-1 to CD4 and cellular co-receptors%3B cooperates with gp41 to mediate fusion of viral membrane with cellular membrane during virus entry into cells +NC_001802.1 RefSeq CDS 7304 8338 . + . Name=gp41;gbkey=Prot;protein_id=NP_579895.1;ID=id-NP_057856.1:512..856;product=Envelope transmembrane domain;Note=cooperates with gp120 to mediate fusion of viral membrane with cellular membrane during virus entry into cells +NC_001802.1 RefSeq CDS 8343 8963 . + 0 Name=nef;gbkey=CDS;gene=nef;product=Nef;locus_tag=HIV1gp9;protein_id=NP_057857.2;ID=cds-NP_057857.2;transl_except=(pos:8712..8714%2Caa:Trp);Dbxref=GenBank:NP_057857.2,GeneID:156110;Note=This particular nucleotide sequence has a premature stop codon in place of a well-conserved tryptophan codon at position 8712-8714 that truncates the HIV1 Nef protein sequence to a 123 amino acids-long N-terminal portion (not shown). diff --git a/data/community/neherlab/hiv-1/pathogen.json b/data/community/neherlab/hiv-1/pathogen.json new file mode 100644 index 00000000..d95e5180 --- /dev/null +++ b/data/community/neherlab/hiv-1/pathogen.json @@ -0,0 +1,70 @@ +{ + "alignmentParams": { + "penaltyGapOpen": 8, + "penaltyGapOpenInFrame": 12, + "penaltyGapOpenOutOfFrame": 14, + "gapAlignmentSide": "left", + "excessBandwidth": 50, + "terminalBandwidth": 50, + "kmerLength": 10, + "kmerDistance": 50, + "minMatchLength": 40, + "allowedMismatches": 8, + "windowSize": 30 + }, + "compatibility": { + "cli": "3.0.0-alpha.0", + "web": "3.0.0-alpha.0" + }, + "placementMaskRanges":[ + {"begin":0, "end":336}, + {"begin":5780, "end":5870}, + {"begin":6160, "end":6240}, + {"begin":6940, "end":7020}, + {"begin":8963, "end":9181} + ], + "deprecated": false, + "enabled": true, + "experimental": false, + "files": { + "pathogenJson": "pathogen.json", + "changelog": "CHANGELOG.md", + "examples": "sequences.fasta", + "genomeAnnotation": "genome_annotation.gff3", + "readme": "README.md", + "reference": "reference.fasta", + "treeJson": "tree.json" + }, + "official": true, + "qc": { + "frameShifts": { + "enabled": true, + "scoreWeight": 20 + }, + "missingData": { + "enabled": true, + "missingDataThreshold": 2000, + "scoreBias": 500 + }, + "mixedSites": { + "enabled": true, + "mixedSitesThreshold": 40 + }, + "privateMutations": { + "cutoff": 700, + "enabled": true, + "typical": 600, + "weightLabeledSubstitutions": 1, + "weightReversionSubstitutions": 2, + "weightUnlabeledSubstitutions": 1 + }, + "stopCodons": { + "enabled": true, + "ignoredStopCodons": [ + {"cdsName": "p6", "codon":49} + ], + "scoreWeight": 40 + } + }, + "schemaVersion": "3.0.0" + } diff --git a/data/community/neherlab/hiv-1/reference.fasta b/data/community/neherlab/hiv-1/reference.fasta new file mode 100644 index 00000000..b3c2a51c --- /dev/null +++ b/data/community/neherlab/hiv-1/reference.fasta @@ -0,0 +1,155 @@ +>NC_001802 Human immunodeficiency virus 1, complete genome +GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCAC +TGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGT +GTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCA +GTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAG +GACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCC +AAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAA +GCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAAT +ATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTG +GCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTC +AGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGC +ATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAGCAAA +ACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAATCAGGTCA +GCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCAC +CTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGA +TACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAA +ACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAG +CTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGA +GAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGAT +GGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGG +GATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGAC +CAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAG +CTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAG +ATTGTAAGACTATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAG +CATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCC +AAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGA +TTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGCCAGAAATTGCAGGGCCCCTA +GGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGA +GACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTC +TTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGA +CAACAACTCCCCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCC +TCAGGTCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGA +AGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAG +ATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCA +GATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACC +TGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCAT +TAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAA +ACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGA +AAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGC +CATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAA +GAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAA +GAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGA +AGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGAT +TAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAG +TAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCA +ATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAAT +AGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCA +GAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACA +GCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGG +GAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACT +CCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGA +ACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATC +AAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTA +TCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACAC +TAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAAT +ATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACATGGTG +GACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTT +AGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGT +AGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGG +AAGACAAAAAGTTGTCACCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAAT +TTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGC +ATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAAT +AGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAAT +TGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTT +AGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAAT +GGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAA +ATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCA +ACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGG +ATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTT +AAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCAGCAATTTCAC +CGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCC +CTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTAT +AGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCAT +CCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGA +CATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAA +TTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGGAAAGGACCAGCAAAGCTCCT +CTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAG +AAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGC +AAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTT +CAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAA +GTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTC +TGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAA +AGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACT +TTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTA +GGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAG +CATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGG +ATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGAC +ACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCT +CCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGC +CATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTTCAGAATTGGGTGTCGACATA +GCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTA +GAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAA +AAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGC +AGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCT +CTATCAAAGCAGTAAGTAGTACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCA +TTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGG +AAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAA +GACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATG +GGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCAC +AGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGA +TGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCAC +AGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAA +AAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAA +GCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGAAGAATGA +TACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGATAAAAAACTG +CTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTA +TAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAA +CACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTA +TTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGG +ACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAAC +TCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGTCAATTT +CACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAATTAATTGTAC +AAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATT +TGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAA +ATGGAATAACACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAA +AACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAA +TTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAA +TAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACCCTCCC +ATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCC +TCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGA +TGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGA +CAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGC +ACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGC +TTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCCTCAATGACGCT +GACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAG +GGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCA +GGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGG +TTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAA +ATCTCTGGAACAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAA +TTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGA +ACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAA +TTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAAT +AGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTT +TCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGG +TGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTG +GGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGAT +TGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTG +GAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGC +CACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTG +TAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATA +AGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAA +TGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAAC +ATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAG +CACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGA +CTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGC +TAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCT +ACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTG +GATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAG +AGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAG +TGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATC +CGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACT +TTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATAT +AAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAG +CTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTT +C diff --git a/data/community/neherlab/hiv-1/sequences.fasta b/data/community/neherlab/hiv-1/sequences.fasta new file mode 100644 index 00000000..a0000b01 --- /dev/null +++ b/data/community/neherlab/hiv-1/sequences.fasta @@ -0,0 +1,4803 @@ +>B.US.2013.0.505_0390a.WG12.MG196745 MG196745 +GATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATAGATGGGAAAAAATTCG +GCTAAGGCCAGGGGGAAAGAAAATGTATAAATTAAAACATATAGTATGGGCAAGCAGGGA +GCTAGAACGATTCGCAGTTAATCCCGGCCTGTTGGAAACATCAGAAGGCTGTAGACAGAT +ACTAGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAA +TACAGTAGCAACCCTCTATTGTGTACATCAAAGGATAGAAATAAAAGACACCAAGGAAGC +TTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAAGCAACAGCTGA +CACAGGAAACAACAGTCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAAGGGCA +AATGGTACATCAGGCTCTATCACCTAGGACTTTAAATGCATGGGTAAAAGTAGTAGAAGA +GAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTGTCAGAAGGAGCCACCCC +ACAAGATTTAAATACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTT +AAAAGAGACAATCAATGAGGAAGCTGCAGACTGGGATAGAGTGCATCCAGTGCATGCAGG +GCCTGTTGCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAGTTACTAG +TACCCTTCAGGAACAAATAGGATGGATGACAAGTAATCCACCTATCCCAGTGGGAGAAAT +ATATAAAAAATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGCCCCACCAG +CATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACAGGTTCTA +TAAAACTCTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTT +GTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATCTTAAAAGCATTAGGACCAGCAGC +TACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAG +AGTTTTGGCTGAAGCAATGAGCCAGGTAACAAATTCAGCTAATATAATGATGCAGAGAGG +CAATCTTGGGAACCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGTAGGACACAT +AGCCAAAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGGCA +CCAAATGAAAGATTGTAATAATGAGAAACAGGCTAATTTTTTAGGGAAAATCTGGCCTTC +CCACAGGGAAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGA +AGAGAGCCTCAGGTTCGGGGGGGAGACAACAACTTCCCCTCCGAAGCAGGAGTCGATAGA +CAAGGACCCGTATCCTTTGACCTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCACA +GTAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTA +TTAGAAGAAATGAATTTGCCAGGAAGGTGGAAACCAAAAATGATAGGGGGAATTGGAGGG +TTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAGATCTGTGGACATAAAGCTATA +GGTACAGTATTAGTAGGACCAACCCCTGTCAACATAATTGGAAGAAATCTGTTGACTCAG +ATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAG +CCAGGGATGGATGGGCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA +TTAATGGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATCTCAAAAATTGGGCCTGAA +AATCCATATAATACTCCAGTATTTGCTATAAAGAAAAAGGACAGTACTAAATGGAGAAAA +TTAGTAGATTTCAGAGAACTTAATAAGAAAACTCAAGACTTCTGGGAAGTTCAATTAGGA +ATACCACATCCCGCAGGGTTGAAAARGAAAAAATCAGTAACAGTACTGGATGTGGGTGAT +GCATATTTTTCAGTTCCCTTAGATGAAAACTTCAGGAAGTATACTGCATTTACCATACCT +AGTATAAACAATGCGACACCAGGGACTAGATATCAGTACAATGTACTTCCACAGGGATGG +AAAGGATCACCAGCAATATTCCAAAGTAGCATGATAAAAATCTTAGAGCCTTTTAGAAAA +CAAAACCCAGAAGTAGTTATCTACCAATACATGGATGATTTGTATGTAGGATCTGACCTA +GAAATAGAACGGCATAGAACAAAAGTAGAAGAACTGAGACAACATCTGTTGAAGTGGGGA +TTGACCACACCAGACAAAAAACATCAAAAGGAACCCCCATTTCTCTGGATGGGTTATGAA +CTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTACCAGAAAAAGACAGCTGGACT +GTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGA +ATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGACCCAAAGCGCTAACAGAAGTAGTA +GCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAGAGAACCA +GTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGG +CAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAG +TATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAGACAATTAACAGAGGCAGTGCAA +AAAATATCCACAGAAAGCATAGTAATATGGGGAAGGACTCCTAAATTTAAACTACCCATA +CAAAAAGAAACATGGGATATATGGTGGACAGACTATTGGCAAGCCACCTGGATCCCTGAG +TGGGAATTTGTCAATACCCCTCCTTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCC +ATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGA +AAAGCAGGATATGTTACTAACAAAGGAAGACAAAAGACTGTCACCATAACTGACACAACA +AATCAGAAAACTGAGTTACAAGCAATTCATTTAGCTTTGCAGGATTCGGGATCAGAAGTA +AACATAGTAACAGACTCACAATATGCATTAGGAATTATTCAGGCACAACCAGATAAAAGT +GAATCAGAAATAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTG +GCATGGGTACCAGCACATAAGGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGT +GCTGGAATCAGGAAAGTATTATTTTTAGATGGAATAGATAAGGCCCAAGAAGACCATGAA +AAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCA +AAAGAAATAGTAGCCAGTTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAA +GTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATC +CTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACA +GGGCAGGAAACAGCATACTTCATCTTAAAATTAGCAGGGAGATGGCCAGTAAARACAATA +CATACAGACAATGGCCCCAATTTCACCAGTACGACAGTTAAGGCCGCCTGTTGGTGGGCG +GGGATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCT +ATGAATAAAGAATTAAAGAAAATTATAGGGCAAGTGAGAGATCAGGCTGAACATCTTAAA +ACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGAG +TACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACTTACAAACTAAAGAATTA +CAAAAGCAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCC +CTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGAC +AATAGTGAAATAAAGGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAA +CAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGAATGAGGATTAGAACATGGAAAAG +TTTAGTAAAACACCATATACATATTTCAAAGAAAGCTAAGGGATGGATTTACAAACATCA +CTATGAAAACAATCATCCAAAAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAA +ATTGGTAATAACAACATATTGGGGTCTACAAACAGGAGAAAGAGACTGGCATTTGGGTCA +GGGAGTCTCCATAGAATGGAGGAAAAGGAGCTATAACACACAAGTAGACCCTAACCTAGC +AGATCAACTAATTCATCTGTATTACTTTGATTGTTTTGCAGACTCTGCTATAAGAAAGGC +CCTACTAGGACAAATAGTTAGCTCTAGGTGTGAACATCAAGCAGGACATAACAAGGTAGG +ATCGCTACAATACTTGGCACTAACAGCATTAATAGCACCAAAGCAGAAAAAGCCACCTTT +GCCTAGTGTTGCAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCA +CAGAGAGAGCCATACAATGAATGGACAATAGGGCTTTTAGAGGAGCTTAAGAATGAAGCT +GTTAGACACTTCCCCAGAGTATGGCTTCATGGCTTAGGGCAATATATCTATGAAACTTAT +GGGGATACTTGGGCAGGAGTGGAGGCCATAGTAAGAATCCTGCAACAACTGCTGTTTATT +CATTTCAGAATTGGGTGTCGACATAGCAGAATAGGAATTACCCAGAGGAGAACAAGAAAT +GGACCCAGTAGATCCTAGCCTAGATCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGC +TTGTAATACTTGCTATTGTAAACACTGTTGCCTACATTGCCAAGTTTGTTTCATGAAAAA +AGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAACGACGCAGCGCTCCTCCAGA +CAGTCAGAATAATCAAGTTCCTCTATCAAAGCAGTAAGTAATACATGTAATGTACTCTTT +ACAAATATTAGCAATAGTAGCCTTAGTAGTAGTAGCAATAATAGCAATAGTTGTATGGAC +TATAGTATTCATAGAATATAGGAAAATATTAAGACAAAAAAGAATAGACAGGTTAATTGA +TAGGATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGATGGGGACCAAGAACAACT +ATCAGCACTTATGGTGGAGATGGGGCATGATGCTCCTTGGAATGTTGATGATCTGTAGTA +CTAATCAACAATTGTGGGTCACAGTATATTATGGGGTACCTGTATGGAAGGAAGCAACCA +CAGTCCTCTTTTGTGCATCAGATGCTAAAGCACATGGTACAGAGGCACATAATGTTTGGG +CCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAATATTGGAAAATATGA +CAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAAATGCAAGAGGATATAATCA +GTTTATGGGATCAAAGCCTAAAGCCATGTGTAGAACTAACTCCACTCTGTGTCACTTTAA +ATTGCACTAAATTAAATCACAATGCCACTCAGAGTAACGAGACAGCAGAGGAAGGAGGAG +GAATGAAAAACTGCTCTTTCAATATCACCACAAGCATGAGAGATAAACAGCAAAAAGAAT +ATGGACTTTTCTATGACCTTGATATAGTACAAATAGATAATAGCACCTATAGGTTGAAAA +GTTGTAACACCTCAGTTATTAAACAAGCCTGTCCAAAGGTATCCTTTGAACCAATTCCCA +TACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATGATAAAACTTTTAATG +GATCAGGACCATGTACAAATGTCAGTACAGTACAATGTACACATGGAATTAGGCCAGTAG +TATCAACTCACCTACTGTTAAATGGCAGTCTAGCAGAAGGAGAAGATATAGTAATTAGAT +CTGAGAATTTCACAAACAATGCTAAAATCATAATAGTACAGCTGAACGAATCTGTAGTAA +TTAATTGTACAAGACCTAACAACAATACAAGAAGAGGTATAAATATAGGACCAGGGAGAG +CATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCACATTGTAACGTTAGTA +TAGTAAAATGGAACAAAACTTTAAATCTAGTAAAGGAAAAATTAAAAAAGCAGTTTAATA +ATACAACAATACTTTTTGATGAACCCTCAGGAGGGGACCCAGAAATCACAATGCACAGTT +TTAATTGTGGAGGGGAATTCTTCTACTGTAATTCAACACCACTGTTTAATGGGACTTGGC +AGAATATGACGAATATTACTGAAAACTTAAATATCACACTCCCATGCAGAATAAAGCAGA +TTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGAAGTA +TTCAATGTTCATCAAACATTACAGGGCTACTGTTAACAAGAGATGGTGGCATCACTAATA +ACACTAATAGCAGTAATGATGAGACCTTCAGACCTGGAGGGGGAGATATGAGGGACAATT +GGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCTTTAGGATTAGCACCCA +CCAGGGCAAGGAGACTAGTGGTGCAAAGAGACAAAAGAGCAGTGGGAATGGGAGCTATGT +TCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATGACGCTGACGG +TACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAAAACAACTTGCTGAAGGCTA +TTGAGGCGCAACAGCACCTGTTGCGACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAA +GAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACRGCTCCTGGGGATTTGGGGTTGCT +CTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATACTAGCTGGAGTAATAAATCTT +ACAATGACATCTGGGATAATATGACATGGATGCAGTGGGAGAGAGAAATTGACAATTACA +CAGAAGAAATATACAACTTACTAGAAAAATCGCAAAACCAGCAAGAAAAGAATGAGCAAG +AATTATTGGAATTGGATAAATGGACAAGTTTGTGGAGTTGGTTTGACATAACAAACTGGC +TGTGGTACATAAGAATATTCATAATGGTAGTAGGAGGCTTAATAGGTTTAAGAATAGCTT +TTGCTGTACTTTCTATAGCAAATAGAGTTAGGCAGGGATACTCACCCCTGTCGTTTCAGA +CCCACCACCCAAGCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAG +AAGGAGGCAAATACAGATCCAGCAGATTAGTGGATGGATTCTTAGCACTTATCTGGGACG +ATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAACAG +CGAGGACTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGGGGAACC +TCTTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTAAACGCCACAG +CTATAGCAGTAGCTGAAGGGACAGATAGGGTTATAGAAGTAGGAAGAAGAGCTTTTAGAG +CTATACTCCACATACCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAAGATG +GGTGGCAAGTGGTCAAAAAGTAGTTTCATTGGATGGCCTAGGGTAAGGGAAAGAATGAGA +CGAGCTGAGCCAGCAGCAGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTA +GAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGG +CTAGAAGCACAAGAGGAAGAGGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGA +CCAATGACTTACAAAGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTG +GAAGGGCTAATTTACTCTCAACAAAGACAAGATATTCTTGATCTGTGGGTCTACCACACA +CAAGGATACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCACTG +ACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGAGGAGGTAGAAAAGGCCAAT +GAAGGAGAGAATAACTGCCTGCTACACCCCATAAGCCAGCATGGGGTGGATGACCCAGAG +AAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCATGTGGCCCGAGAA +CTGCATCCAGAATATTATAAGAACTGATGACATATAAGAACTGCTGACATCGGAACTGCT +GACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCTG +GGCGGGACTGGGGAGTGGCGAG +>B.BR.2010.0.10BR_PE003.KT427747 KT427747 +CGTCTGTTGTATGACTCTAGTAACTAAAGATCCCTCAGACTATCTTAGCCAGTGTGAAAA +ATCTCTAGCAGTGGCGCCCGAACAGGGACCCGAAAGCGAAAGTAGAACCAGAGGAGCTCT +CTCGACGCARGACTCGGCTTGCTGAAGCGCGCACAGCAAGAGGCGAGGGGCGGCGACTGG +TGAGTACGCCAAAACTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATAGGTGCGAGAGCG +TCGGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAAAATTCAGTTAAAGCCAGGAGGA +AAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAAGGAGCTAGAACGATTCGCA +GTCAATCCTGGCCTTTTAGAGACATCAGAGGGCTGTAGACAAATACTGCAACAGCTACAA +CCATCCCTTCAAACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAGTCCTC +TAYTGTGTRCATCAAAAGATAGAKGTAAAAGACACCAAGGAAGCCTTAGATAGGATCGAG +GAAGAGCAAAACAAAAGTAAGAAAARGRCRCAGCAAGCAGCAGCTGACACAGGAAATAAG +CAAGCAGCCRCTAACACAGGAAGCAGCARCCARGTCAGCCAAAATTACCCTATAGTRCAA +AATCTTCAGGGGCAAATGGTACATCARGCCATATCACCTAGAACTTTAAATGCATRGGTA +AAAGTAGTAGAAGARAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTACAGCAYTATCA +GAAGGAGCCACCCCACARGATTTAAACACCATGYTAAACACAGTGGGRGGACATCAAGCA +GCTATGCAAATGTTAAAAGAGACCATCAATGARGAAGCTGCAGAATRGGATAGATTGCAC +CCAGCACAGGCAGGGCCTGTTGCGCCAGGCCAGATGAGAGACCCAAGGGGAAGTGACATA +GCAAGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAGTAATCCACCTATC +CCAGTAGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAAAATAGTAAGAATG +TATAGCCCTACCAGTATTCTGGACATAAAACAGGGACCAAAAGAGCCTTTTAGAGACTAT +GTAGACAGGTTCTATAAAACTTTAAGAGCAGAGCAAGCTTCACAGGATGTAAAAAATTGG +ATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGCAAGACCATTTTAAAAGCA +TTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCC +GGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGCAACAGCTACTTCAACTGCC +ATAATGATGCAGAAAGGCAATTTTAGGAATCAAAGAAAGACTGTTAAGTGTTTCAATTGT +AGTAAAGACAGGCACATAGCAAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGCTRGAAA +TGTRGAAAGGAAGGACATCAAATGAAAGATTGYACTGAGAGACAGGCTAATTTTTTARGG +AAAATCTGGCCTTCCCACAAGGGRAGGCCARGGAACTTTCTCCAGAGCAGGCCAGAGCCA +ACAGCCCCRCCAGAGCCAACAGCCCCACCAGAAGAGAGCTGCAGGTTTGGGGAAGAGACA +ACAACTCCCTCTCAGAAGCAGGGGCCAATAGACAAGGAGCTATATCCTTTAACCTCCCTC +AAATCACTCTTTGGCAACGACCCCTCGTCCCAGTAAGGATAGGGGGGCAAMTAAAGGAAG +CTCTGCTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTGCCAGGAAAAT +GGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAGCAGA +TACTCGTAGAAATCTGTGGGCACAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTG +TCAACATAATTGGAAGAAATCTGTTGACGCAGATTGGCTGCACTTTAAATTTCCCCATTA +GTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAAC +AATGGCCATTGACAGAARAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAA +AGGAAGGAAAAATTTCAAAAATTGGGCCCGAAAACCCATACAATACTCCAATATTTGCCA +TAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTGGATTTCAGAGAACTTAATAAGA +GAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAGAAGA +AAAAATCTGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAA +ACTTCAGGAAGTATACTGCCTTTACCATACCCAGTGTTAACAATGAAACACCAGGGGTTA +GATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTA +GCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTACCAAT +ACATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAG +AGGAACTGAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGA +AGGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAAC +CTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAA +AATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAACTCC +TTAGGGGAACCAAATCACTAACAGAGGTAGTACCACTAACAGTAGAAGCAGAGTTAGAGC +TGGAAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTTTACTATGACCCATCAA +AAGACTTAATAGCAGAAATACAGAAGCAAGGGCAAGGTCAGTGGACATATCAAATATATC +AAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTA +ATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAACCACAGAGAGCATAGTAATAT +GGGGAAAGATTCCTAAATTTAAACTACCCATACAAAAGGAAACATGGGAAGCATGGTGGA +TAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAG +TAAAATTATGGTACCAGTTAGAAAAGGAACCCATTGTGGGAGCAGAGACTTTCTATGTAG +ATGGAGCAGCTAGTAGGGAAACTAGATTAGGAAAAGCAGGATATGTTACTGACAGAGGAA +GACAAAAAATTGTTCCCCTAACGGACACAACGAATCAGAAGACTGAGCTACAAGCAATTC +ATCTAGCTCTGCAGGATTCGGGGTCACAAGTAAATATAGTAACAGACTCACAATATGCAT +TAGGAATTATTCAAGCACAACCAGATAAAAGTGAATCAGAGATAGTCAATCAAATAATAG +AGCAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTG +GAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAAAGTACTATTTTTAG +ATGGAATAGATAAGGCCCAAGAGGAGCATGAAAAATATCACAATAATTGGAGATCAATGA +CTAGTGAGTTTAACATACCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGACAAAT +GTCAGCAAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGC +TAGACTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGAT +ATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAAGAAACAGCATACTTTCTCTTAA +AATTAGCAGGAAGATGGCCAGTAAAAACAATACACACAGACAATGGCAGTAATTTCACCA +GTGCTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGTATTCCCT +ACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAGATTATAG +GACAGGTAAGAGATCAAGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTACTTATCC +ACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCGGGAGAAAGAATAATAGACA +TAATAGCAACAGACATACAAACCAAAGAACTACAAAAACAAATTACAAAAATACAAAATT +TTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCAGCAAAGCTTCTCT +GGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAGATAAAAGTAGTGCCAAGAA +GAAAAGCAAAGATCCTTAGGCATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAA +GTAGACAGGATGAGGATTAATACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCA +AAGAAAGCTAATAAATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGT +TCAGAAGTACACATCCCACTAGGGGATGATACCTTAGTAATAACAACATATTGGGGTCTG +CATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGG +AGATACAGTACACAAGTAGACCCTAACCTAGCAGACCAACTAATCCACATGTACTATTTT +GATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGGGATAGAGTTAGACCTAGG +TGTGAGTATCAAGCAGGACATAATAAGGTAGGATCTCTACAGTACTTGGCACTAACAGCA +TTAATAAAACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAGGAAACTGACAGAGGAT +AGATGGAACAAGCCCCACAGGACCACGGGCCGCAGAGGGAACCATACAATGAGTGGACAC +TAGAGCTTTTAGAAGAACTTAAGAATGAAGCTGTTAGACATTTCCCTAGGCCATGGCTCC +ATAACTTAGGACAATATATCTATGAAACTTATGGAGACACTTGGGCAGGAGTGGAAGCCA +TAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGATGTCAACATAGCA +GAATAGGCATTATTCGACACAGGAGAGCAAGGAATGGAGCCAGTAGATCCTAGRCTAGAG +CCCTGGCAGCATCCAGGAAGTCGGCCTACAACTCCTTGTACCAAATGCTATTGTAAAAAA +TGTTGCTTTCATTGCCAAGTTTGCTTTGTAACAAAAGGCTTAGGCATCTCCTATGGCAGG +AAGAAGCGGAGACAGCGACGAAGACCTTCTCAAGACAGTAAGACTCATCAAGCTTCTCTA +CCAAAGCAGTAAGTAGTACATGTAATGAACCCTTTAAMCATAGYATCAATAGCAGGCTTA +GTAGTAGCAGCAGTAMTAGCAATAGTTGTGTGGACTATAGTGTACCTAGAATATAGGAAA +ATATTAAAACAAAGAAAAATAGACAGGTTAATTGATAGAATAAGGGAAAGAGCAGAAGAC +AGTGGCAATGAGAGCGAGGGGGATCATGAAGAGTTGGCAACACTTGTGGAGATGGGGCAC +CATGCTCCTTGGGATGTTGATGATCTGTAATGCTACAGAACAACTGTGGGTCACAATCCA +TTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAA +AGCAGTTGAAACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCC +TAACCCACAAGAAATAAATTTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATGA +CATGGCAGAACAGATGCATCAGGATATAATCAGTTTATGGGACCAAAGCCTAAAGCCATG +TGTAAAATTAACCCCACTCTGTGTTATTTTAAATTGCACTGATGTKRGKAMTGCTAATAG +TACTACTAATGATACTAAGAGGACTGTAGAAAACAGTATGGAGGGAGAAATAAAAWAGTG +CTCTTTCAATATCACCACAGGCATAAGAGATAAGGTGCGGAAAGAATATGCATATTTTAA +TAAACTTGATGTAACACCAATAGATGATACAGGTAATAATACAGACTATACAAAATATAC +CTTAATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCTAAGACAACCTTTGAACC +AATTCCMATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATAATAAGAC +ATTCAATGGAACAGGACCATGTAAAAATGTTAGCACAGTACAATGTACACATGGAATTAG +GCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGACATAGTAAT +TAGATCTGAAAATCTCACAGACAATACTAAAACCATAATAGTACAGCTGAACTCATCTGT +AACAATTAATTGTACAAGACCCAACAACAATACAAGAAAAGGTATACATATGGGATGGGG +AAGAGCATTTTATGCAACAGGACAAATAATAGGAAATATAAGACAAGCACATTGTAACCT +TAGTACAGCAGATTGGAACAGCACTTTAGAACAGATAGCTAGAAAATTAAATGAACACTT +TAATAAAACAAYARTWKTTTTTAATCAATCCTCAGGAGGGGACCCAGAAATTGTAATGCA +CAGTTTTAATTGTGGAGGAGAATTTTTCTATTGTAATACAACACAACTGTTTAATGGTAA +TTTGAATAACAGTATTTGGACATTTAATGGTAATAATAAGACTGAGAATATCACACTCCC +ATGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCC +TCCCATCCAAGGACTAATTAGATGTTCATCAAAGATTACAGGGGTGCTATTAACAAGAGA +TGGTGGTWYAGRGAACAACGGGTCTGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGA +CAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCAATAGGAGTAGC +ACCCTCCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAACGCTAGG +AGCTATGTTCCTTGGGTTCTTGGGAACAGCAGGAAGCACTATGGGCGCAGCGTCATTGAC +GCTGACGGCACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCT +GAGGGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCT +CCAGGCAAGAGTCCTGGCTGTGGAGAGATACCTAAGGGATCAACAGCTCCTAGGGATCTG +GGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATAAGACTTGGAGTAA +TAAATCTATGCATGACATTTGGGATAACATGACCTGGATGGAGTGGGAGAGAGAAATTGA +CAATTACACACAAGTAATATACAACTTGCTTGAAGAATCGCAGAACCAACAAGAAAAAAA +TGAACAAGACTTATTGGCATTGGATAAGTGGGCAAGCTTGTGGAATTGGTTTAACATATC +AAATTGGCTGTGGTATATAAAAATATTCATCATGATAGTAGGAGGCTTAGTAGGGTTAAG +AATAGTTTTTGTTGTACTTTCACTAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTC +ATTCCAGACCCGCCTCCCAGCCCCGAGGGGACTCGCCAGGCCCGAAGGAACCGAAGAAGA +AGGTGGAGAGAGAGACAGAGACACATCAACAAGATTAGTAACTGGATTCTTAGCACTCAT +CTGGGTCGACTTGAGGAGCCTGTGCCTCTTCATCTACCACCAATTGAGAGACTTACTCTT +GATTGCAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAAYAYCT +GTGGAGYCTCCTGCAGTATTGGRGYCAGGAACTAAAGARTAGTGCTATTARTTTGCTTAA +CGCCACAGCCATAGTAGTAGGCGAGGGGACAGATAGGATTATAGAAGCAGTACAAAGACT +TGGTAGAGCTGTTCTCCACATACCTAGAAGAATAAGACAGGGCGCAGAAAGGGCTTTGCA +ATAAGATGGGGGGCAAGTGGTCAAAAAGTAGGATTGTCGGATGGTCTGCTGTGAGGGAAA +GAATGAGACGAGCTGAGCCAGCAGCGAGACGAGCTGAGCCAGCAGCAGACGGGGTGGGAG +CAGTATCTCGAGATTTAGAAAAATATGGAGCAATCACAAGTAACAACACAGCAGCTACTA +ATGCTGATTGTGCCTGGCTAGAAGCACAAGAAGAGGAGGAGGTAGGTTTTCCAGTCAGAC +CTCAGGTACCTTTAAGACCAATGACTTACAAAGCAGCTGTAGATCTTAGCCACTTTTTAA +AAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCACGAGGAGACAAGAGATCCTCGATC +TGTGGGTCTACCACACACAAGGCTTCTTCCCTGATTGGGACAACTACACACAAGGGCCAG +GGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGACCCAGAGC +AGGTAGAAAAGGCCAGTGAAGGAGAAACCAACTGCTTGTTACACCCTATGAACCAGCATG +GAGTGGATGACCCAGAGAAAGAAGTGTTGCAGTGGAAGTTTGACAGTCGCCWAGCATTTC +ATCACGTGGCCCGAGAGCTGCATCCGGAATACTACAAA +>B.US.2004.0.ES8_43.EF363126 EF363126 +TGGAAGGGCTAATTTATTCCCAGAAAAGACAAGAGATCCTTGATCTGTGGGTCTACCACA +CACAAGGCTTCTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCCC +TGACCTTCGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAAGTAGAAGAAGCCA +ATGAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCAGCATGGGATGGATGACCCAG +AGAAAGAAGTGCTAGTATGGAGGTTTGACAGCCGCCTAGCATTTCATCACTTGGCCCGAG +AGCTGCATCCGGAGTTCTACAAGGACTGCTGACACTGTGCTTTCTACAAGGGACTTTCCG +CTGGGGATTTCCAGGGGAGGCGTGACCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGAT +GCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATTTGA +GCCTGGGAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCT +TTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCT +CAGACCATTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCGGAAA +GCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACG +GCAAGAGGCGAGAGGCGGCGACTGGTGAGTACGCCGAAATTTTTGACTAGCGGAGGCTAG +AAGGAGAGAGATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTGGATAGATGGGA +GAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAAGTACAAATTAAAACATATAGTATGGGC +AAGCAGGGAGCTAGAACGATTCGCAGTCAATCCTGGCCTACTAGAAACATCAGGAGGCTG +TAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAGGAACTTAGATC +ATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGATGTAAAAGACAC +CAAAGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCA +AGCAGCAGCTGACACAGGAAACAGCAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAA +CATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAA +AGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGA +AGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGC +CATGCAGATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCC +AGTACATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGC +AGGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAATAATCCACCTATCCC +AGTAGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAAAATAGTAAGGATGTA +TAGTCCTTCCAGCATTCTGGACATAAAACAAGGACCAAAGGAACCCTTTAGGGACTATGT +AGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAAGTAAAAAATTGGAT +GACAGAAACCTTGCTGGTCCAAAATTCGAACCCAGATTGTAAAACTATTCTAAAAGCATT +GGGGCCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGC +CCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCCACCATAAT +GATGCAGAAAGGCAATTTTAGGAACCAAAGAAAGGCTGTTAAGTGTTTCAATTGCGGCAA +AGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGG +AAGGGAAGGACACCAAATGAAAGATTGTACAGAAAGACAGGCTAATTTTTTAGGGAAAAT +CTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCTTCAGAGCAGGCCAGAGCCAACAGC +CCCATCAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGATAACAACTCCCCCTCA +GAAACAGGAGACGCTGATAGACCTGGACAAGGAACTGTATCCCTCAGCCTCCCTCAAATC +ACTCTTTGGCAACGACCCCTTGTTAAAATAAAGATAGGGGGGCAAGTAAAGGAAGCTCTA +TTAGACACAGGAGCAGATGATACAGTGTTAGAAGAAATAAGTTTGCCAGGAAGATGGAAA +CCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATCAGATACCC +ATAGAAATCTGTGGGCATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAAC +ATAATTGGAAGAAATCTGTTGACTCAACTTGGTTGCACTATAAATTTTCCCATTAGTCCT +ATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGG +CCATTGACAGAAGAGAAAATAAAAGCATTAGTAGAGATCTGTACAGAAATGGAAAAAGAA +GGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAG +AAAAAAGACAGTACCAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACT +CAGGACTTCTGGGAGGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAA +GCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTC +AGGAAGTATACTGCATTTACCATACCTAGTATGAACAATGAGACACCAGGGATTAGGTAT +CAGTACAATGTGCTCCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATG +ACAAAAATCTTAGAGCCTTTTAGAAATCAAAATCCAGACATAGTTATCTATCAATACATG +GATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAA +CTGAGGGAACATCTGTTGAAATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAA +CCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTGCAGCCTATA +GTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTG +AATTGGGCAAGTCAGATATACCCAGGGATTAAAGTAAAGCAATTATGTAGACTCCTTAGG +GGAGCCAAGGCACTAACAGAAGTAATACCACTAACAAAAGAAGCAGAACTAGAACTGGCA +GAAAACAGGGAAATTCTAAAAGAGCCAGTACATGGAGTGTATTATGACCCAACAAAAGAC +TTAATAGCAGAAATACAGAAGCAGGGGCAAGACCAATGGACGTATCAAATTTATCAGGAG +CCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAAAGAGGGGTACCCACACTAATGAT +GTAAAACAGTTAACAGAGGCAGTGCAAAAAGTAAGCACAGAAAGTATAGTGATATGGGGA +AAGATTCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAG +TATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAA +TTATGGTACCAGCTAGAGAAAGAACCCATAATAGGAGCAGAAACATTCTATGTAGATGGG +GCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGGAAACAA +AAAGTTATCTCCCTAACTGACACAACAAATCAGAAAACTGAGTTACATGCAATTCATCTA +GCTTTACAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGG +ATCATTCAAGCACAGCCAGATGAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAG +TTAATAAAAAAGGACAAAGTCTACCTGACATGGGTACCAGCGCACAAAGGAATTGGAGGA +AATGAACAAGTAGATAAATTAGTCAGTACTGGAATTAGGAAAGTACTATTTTTAGACGGA +ATAGATAAAGCCCAAGAAGAACATGAGAAATATCACAGCAATTGGAGAGCAATGGCTAGT +GATTTTAACCTGCCACCTGTGGTAGCCAAAGAAATAGTAGCCAGCTGTGATAAATGTCAG +CTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGAT +TGTACACATTTAGAAGGAAAAATTATCATAGTAGCAGTTCATGTAGCCAGTGGGTATATA +GAAGCAGAAGTCATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAGGTTA +GCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTACT +ACAGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAACAGGAATTTGGCATTCCCTACAAT +CCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAG +ATAAGAGATCAGGCTGAGCATCTCAAGACAGCAGTACAAATGGCAGTATTCATTCACAAT +TTTAAAAGAAAAGGGGGGATTGGGGGGTGCAGTGCAGGGGAAAGAATAGTAGACATAATA +GCATCAGACATACAAACTAAAGAATTACAAAAACAAATTTCAAAACTTCAAAATTTTCGG +GTTTATTTCAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTCTGGAAA +GGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAAATAAAAGTAGTGCCAAGAAGAAAA +GCAAAGATACTTAGGCATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGA +CAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATATCTCAAAGAA +AGCTGACAGATGGTTTTATAGACATCATTTTGAAAGCACTCATCCAAAAATAAGTTCAGA +AGTACACATCCCATTAGGGGATGCAGAATTGGTAATAATAACATATTGGGGTCTACATAC +AGGAGAAAGAGATTGGCATTTGGGACAAGGAGTCTCCATAGAATGGAGGAAAAAGAGATA +TAGCACACAAGTAGACCCTAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTG +TTTTACAGAATCTGCCATAAGAAATGCCATCTTAGGAAATAGAGTTAGTCCTAGGTGTGA +ATATCAAGCAGGACATAACAAGGTAGGATCCCTACAGTACTTAGCACTAGCAGCATTAGT +AACACCAAAAAAGACAAAGCCACCTTTGCCTAGTGTCGCGAAACTGACAGAGGATAGATG +GAACAAGCCCCAGAGGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAG +CTTTTAGAGGAGCTTAAGAGTGAAGCTGTGAGACATTTTCCTAGGCTATGGCTCCATAGC +TTAGGGCAACATATCTATGAAACTTATGGGGACACTTGGGCAGGAGTGGAAGCCATAATA +AGAATTCTGCAACAACTGCTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGAATA +GGCATTACCCGACAGAGGAGAACAAGAAATGGAGCCAGTAGATCCTAGACTGGAGCCCTG +GAAGCATCCGGGGAGCCAGCCTAGGACTGCCTGTACCACTTGCTATTGTAAAAGGTGTTG +CTATCATTGCCAAACTTGCTTCATAACGAAAGGCTTAGGCATCTCCTATGGCAGGAAGAA +GCGGAGACAGCGACGAGGAGCTCATCAGGACAGTGAGACTCATCAAGCGTCTCTATCAGA +GCAGTAAGTAGTACATGTAATGCAACCTTTACAGATATTAGCAATAGTAGGATTAGTAGT +AGCAGCAATAATAGCAATAATTGTATGGTCTATAGTACTTATAGAATATAGGAAAATATT +AAGACAGAAAAAAATAGACAGGATAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGG +CAATGAGAGTGATGGAGACCAGGAAGAATTGGCAGCACTGGTGGTGGAAAGGGGGCATCA +TGCTCCTTGGGATGTTAATGATCTGTAATGCTGAAGAACAGTTGTGGGTCACAGTCTATT +ATGGGATACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAG +GATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCA +ACCCACAAGAAGTAGTAATGGCAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACA +TGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGTCTAAAACCATGTG +TAAAATTAACCCCACTCTGTGTCACTTTAAATTGTACTGATGTGGAGAAGAATAATACTA +CTAATACCACAACTACTAGTACCACAACTACTATTACCCCACTAATGATGGAGAAGGGAG +AAATAAAAAATTGCTCTTTCAAAATCACCACAAACATGAGAGATAAGGTGCAGAAAGAAT +TTGCACTTTTTCATAAATTTGATGTAGTACGAATGGAAGAAGATAATACTGATAATACTA +GCTATAGGTTGGTAAGTTGTAACACCTCAACCATTACACAGGCCTGTCCAAAGGTATCCT +TTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTGAAGTGTAATA +ATAAGGAGTACAATGGAACAGGACCGTGTACAAATGTTAGCACAGTACAATGTACACATG +GAATTAGGCCAGTAGTATCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATA +TAGTAATTAGCTCTGCCAATCTCACAAACAATGCTAAAATCATAATAGTGAAACTGAATG +AATCTGTAGCACTGAACTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCTATAG +GACCAGGCAGAGCATTTTATGCAACAGGAAATATAATAGGAGATATAAGACAAGCACATT +GTAACCTTAGTAGTACACAATGGAGTAACACTTTAAAAAGGGTAGCTATAAAATTAGGAG +AACAATTTAATAATAAAACAATAGCCTTTAAACAATCCTCAGGAGGGGACCCAGAAATTG +TAATGCTCAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACATCACAACTGTTTA +ATAACACTTGGAATGGTACTGAGTTAAGTAATAGTAAAGAAAATGGTAATATCACACTCC +AATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGGAAAGCAATGTATGCCC +CTCCCATCAGAGGACAAATTAGATGTGTGTCAAATATTACAGGGCTGCTATTAACAAGAG +ATGGTGGTACAAACAGCACCACCGAGACCTTCAGGCCTGCAGGAGGAAATATGAGGGACA +ATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCAC +CCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGCGGGAATAGGAGCTT +TTTTCCTTGGGTTCTTGGGACTAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGA +CGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGG +CTATTGAGGCGCAACAGCACATGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGG +CAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAGCAGCTCCTAGGGATTTGGGGTT +GCTCTGGAAAACTCATCTGCACCACTGCTGTGCCTTGGAATAGTAGTTGGAGTAATAAAA +CTATGGACCAGATTTGGAATCACACAACCTGGATGCAATGGGAAAGAGAAATTGATAATT +ATACAGACTTAATATACTCCTTAATTGAAGACTCGCAAAACCAACAAGATAAGAATGAAC +AAGAATTATTGGAATTAGATAAATGGGCAAATTTGTGGAATTGGTTTGACATAACAAACT +GGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAG +TTTTTATTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCCTTATCGTTCC +AGACCCGCCTCCCAGCTCAGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTG +GAGAGCGAGACAGAGACAGATCCGAATCCTTAGTGAATGGATTCTTAGCAATCATCTGGG +TCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTG +TGACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAGATCCTCAAATACTGGTGGA +ATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAACGCCA +CCGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTGTTACAAAGAGCTTGGA +GAGCTATTCTCCACATACCTACAAGAATAAGACAAGGCTTGGAAAGGGCTTTGCTATAAG +ATGGGTAATAAGTGGTCAAAAAGTAAGCTGGGGGGATGGTTCACTGTAAGGGAAAGAATG +AGAAGAACTGAACCAGCAGCAGATGGGGTGGGACCAGCATCTCGGGACCTAGAAAGACAT +GGAGCACTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCA +CAAGAGGAGGAGGAGGTGGGTTTTCCAATCAGACCTCAGGTACCTTTAAGACCAATGACT +TATAAGTCAGCTCTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTA +ATTTATTCCCAGAAAAGACAAGAGATCCTTGATCTGTGGGTCTACCACACACAAGGCTTC +TTCCCTGACTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCCCTGACCTTCGGA +TGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAAGTAGAAGAAGCCAATGAAGGAGAG +AACAACTGCTTGTTACACCCTATGAGCCAGCATGGGATGGATGACCCAGAGAAAGAAGTG +CTAGTATGGAGGTTTGACAGCCGCCTAGCATTTCATCACTTGGCCCGAGAGCTGCATCCG +GAGTTCTACAAGGACTGCTGACACTGTGCTTTCTACAAGGGACTTTCCGCTGGGGATTTC +CAGGGGAGGCGTGACCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAA +GCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATTTGAGCCTGGGAGCT +CTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTTGAGTGCTTC +AAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCATTTT +AGTCAGTGTGGAAAATCTCTAG +>B.US.2012.0.505_0997a.WG03.MG196879 MG196879 +CTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTAGAAAATCTCTAGCAGTGG +CGCCCGAACAGGGACTTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACT +CGGCTTGCTGAAGCGCGCACAGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAA +CTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCGGTATTAAGCGG +GGGAGAATTGGATAGATGGGAAAGAATTCGGCTAAGGCCAGGGGGAAAGAAAAAATATAG +ACTAAAACATATAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCAGTTAATCCTGGCCT +GTTAGAAACAGCAGAAGGCTGTAAACAAATACTGGAACAGCTACAACCAGCCATTCAGAC +AGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCA +AAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGATAAAATAGAGGAAGAGCAAAACAA +AAGCAAGAAAAAGGTACAGAAAGTAGCGGCTGACGCAGGAAACAGCAGCAATGTCAGCCA +AAATTACCCTATAGTGCAGAACGGCCAGGGGCAAATGGTACATCAGGCCATATCACCTAG +AACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACC +CATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACAC +AGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATTAATGAGGAGGCTGC +AGAATGGGATAGATTGCATCCAGCGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGA +ACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGAT +GACAGGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATT +AAATAAGATAGTAAGGATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAA +AGAACCCTTTAGAGATTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTC +ACAGGAGGTGAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCAAACCCAGATTG +CAAAACTATTTTAAAAGCATTGGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATG +TCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAATTTTGGCGGAAGCAATGAGCCAAGT +AACAAATTCAGCTACCATAATGATGCAGAGAGATAATTTTAGGAATCAAAGAAAGACTGT +TAAGTGCTTCAATTGTGGCAAAACAGGGCACATAGCCAAAAATTGCAGGGCTCCTAGGAA +AAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGCATTGAGAAGCA +GGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCCTCA +GAGCAGAACAGAGCCAACAGCTCCACCAGAAGAGAGCTTCGGGTTTGGGGAAGAGATAAC +AACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACGGTATCCTTTAACTTCCCTCAG +ATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAAATAGGGGGGGCAACTAAAGGAAGC +TCTATTAGATACAGGAGCAGATGATACAGTACTAGAAGCAATGAATTTGCCAGGGAGATG +GAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGAGAATATGATCAGAT +ACCCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGT +CAACATAATTGGAAGAAATCTGTTGACGCAGATTGGTTGCACTTTAAATTTTCCCATAAG +TCCTATTGAAACTGTACCAGTAAAATTAAAACCAGGAATGGATGGCCCAAAAGTTAAACA +ATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAA +GGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCAAT +AAAGAAAAAAGACAGTACTAAATGGAGARAATTAGTAGATTTCAGAGAACTTAATAAAAG +AACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAA +AAAATCAGTAACAGTATTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGA +CTTCAGGAAGTATACTGCATTCACCATACCTAGTGTAAACAATGAGACACCAGGGATTAG +ATATCAGTACAATGTGCTTCCACAGGGATGGAAGGGATCACCAGCAATATTCCAAAGTAG +CATGATAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATA +CATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGA +AGAGCTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAA +AGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCC +TATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAA +ATTAAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTTAGGCAATTATGTAAACTCCT +TAGGGGAGCCAAAGCATTAACAGAAGTAATACCATTAACAGAAGAGGCAGAACTAGAACT +GGCAGAAAATAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCTTCAAA +AGACTTAATAGCAGAAATACAGAAACAGGGGCAGGGCCAATGGACATATCAAATTTATCA +GGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTACCCACACTAA +TGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAGGCATAATAATATG +GGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAAGAAACATGGGAAATATGGTGGAC +AGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGT +AAAATTATGGTACCAGTTAGAAAAGGAACCCATAGCAGGGGCAGAAACTTTCTATGTAGA +TGGGGCAGCTAACAGGGAAACTAAATTAGGAAAAGCAGGATATGTTACTGACAAAGGAAG +ACAAAAAGTTGTCCACCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTA +TCTAGCTTTGCAAGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATT +AGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGA +GCAGTTGATAAACAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGG +AGGAAATGAACAGGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGA +TGGAATAGATAAGGCCCAGGAAGACCATGAAAAATATCACAGCAATTGGAGAGCAATGGC +TAGTGACTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATG +TCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACT +AGACTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATA +TATAGAAGCAGAAGTTATTCCAGCAGAAACGGGGCAGGAAACAGCATACTTTCTCTTAAA +ATTAGCAGGAAGATGGCCAGTAAAGACAATACATACAGACAATGGTAGCAATTTCACCAG +TGCTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAACAGGAATTTGGCATTCCCTA +CAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGG +ACAAGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCA +CAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGACAGAATAATAGACAT +AATATCATCAGATATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTT +TCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTG +GAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAG +AAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAG +TAGACAGGATGAGGATTAGAACATGGAAAAGTCTAGTAAAACACCATATGTATAGATCAA +AGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCCACATCCAAGAGTAAGCT +CAGAGGTACACATCCCAATAGGGGATGCTAGACTGGTAATAACAACATATTGGGGTCTGC +ATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCGTAGAATGGAGGACAAGGA +GATATGGAACACAAGTAGACCCTGGCCTAGCAGACCAACTAATCCATCTGTATTACTTTG +ATTGTTTTTCAGAATCTGCCATAAGAAAAGCCATATTAGGACATATAGTTAGTCCTAGTT +GTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAGTACTTGGCACTAGCAGCAT +TAGTACCACCAAAACAGAGAAAGCCACCTCTGCCTAGTGTTACAAAACTGACAGAAGACA +GATGGAACAAGCCCCAGAAAACCAAGGGCCACAGAGGGAGCCGTACAATGAGTGGACACT +AGAGCTCCTAGAGGAGCTTAAGAGTGAAGCAGTTAGACATTTTCCTAGGGTGTGGCTCCA +TGGCTTGGGGCAACATATCTATGAAACTTATGGTGATACTTGGGCAGGAGTGGAGGCCAT +AATAAGAATTTTGCAACAACTGCTTTTTATTCATTTCAGAATTGGGTGTCGACATAGCAG +AATAGGCATTATTCAACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCCTAGAGC +CCTGGAAGCATCCAGGAAGTCAGCCTAAGACTGCCTGTACCAAGTGCTATTGTAAAAAGT +GTTGCTTTCACTGCTATAAGTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGA +AGAAGCGGAGACAACGACGAAGAACTCCTCAGGACCGTCAGACTCATCAAGTTTCTCTAT +CAAAGCAGTAAGTACTAAATGTAATGAGCGCTTTAAAGATAGTAGCAATAGTAGCATTAG +TAGTAGGAGCAATAATAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAA +TATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACA +GTGGCAATGAGAGTGACGGGGATCAGGAGGAATTGTCAGCACTTGTGGAAATGGGGCACC +TTGCTCCTTGGGATGTTAATAATCTATAGTGCTGCAGATAATTTGTGGGTCACAGTCTAT +TATGGGGTACCTGTGTGGAAAGAAGCAACCACTACTTTATTTTGTGCATCAGATAGTAAA +GCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCC +AACCCACAAGAAGTAGTATTGGAAAATGTAACAGAAAATTTTAACATGTGGGAAAATAAC +ATGGTAGAACAGATGCATGGGGATATAATCAATTTATGGGATCAAAGCCTAAAGCCATGT +GTAAAATTAACCCCACTTTGTGTTACTTTAAATTGCACTGATTATGTAGGGAATAGTGCT +AAAAATGGTACTGATTCGGGGAATAGTACTGTGGCGAATAATGCTACTATTGGGGAAATA +AAAAACTGCTCTTTCAATATCACCACCAGCATAAAAGATAAGGTGCAGAAAGAAAAAGCA +TTGTTTTATAAATATGATTTAGTACAAATAACTGAAGATAAAAATAGTAATACGAGCTAT +AGTAGCTATAGGTTGGTAGGTTGCAACACCTCAGTCATTACACAAGCCTGTCCAAAAATA +TCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGT +AATGATAAAAGGTTCAATGGAAAAGGACCATGTAAAAATGTCAGCACAGTACAATGTACA +CATGGAATAAGACCAGTAGTATCAACTCAACTACTGTTAAATGGCAGCTTAGCAGAGAAA +GAAATAGTAATTAGATCTGAAAATTTCACGAGCAATACTAAAAACATAATAGTACAGTTA +AATGAATCTGTAGAGATTAAGTGTACAAGACCCAACAACAATACAAGAAAAGGTATACAT +TTAGGACCAGGAAAAGCCTTTTATGCAACAACAGACATAATAGGAGATATAAGACAAGCA +CATTGTAACATTAGTGGAACAAAATGGAATAACACATTAAAACAGATAGCTGAAAAATTA +AAAGAACAATATAATAATAATAAAACAATAGTCTTCAATCAATCCTCAGGAGGGGATCCA +GAAATTGTAATGCACAGTTTTATCTGTGGAGGGGAATTTTTCTACTGTAATACAACGCAA +CTGTTTAGGGGTAATGGTACTGGTAATGGTACTGGAGAGTCAAGTGACATTGTCACACTC +CCATGCAGAATAAAACAAATTGTAAACATGTGGCAGAAAGTAGGAAAAGCTATGTATGCC +CCTCCCATCAAAGGACTAATTAGATGTTCATCAAATATTACAGGGCTAATATTAACAAGA +GATGGTAGTAATAAAAGTAAAAGTGATCCAGAGATCTTCAGACCTGCAGGAGGAGATATG +AGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTCAACCATTAGGA +GTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATA +GGAGCTGTGTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATA +ACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTG +CTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAG +CTCCAGGCAAGAGTCATGGCTGTGGAAAGATACCTGCAGGATCAACAGCTCCTGGGAATT +TGGGGTTGCTCTGGAAAGCTCATTTGCACCACTTCTGTGCCTTGGAATGCGAGCTGGAGT +AACAAATCTCTGGAGAAAATTTGGGATAACATGACCTGGATGGAGTGGGAAAAAGAGATT +GACAATTACACAAACGAAATATACACCTTAATTGAAATAGCGCAAAACCAACAAGAAAAG +AATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATA +ACAAACTGGCTGTGGTATGTAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTA +AGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTA +TCGTTTCAGACCCGCCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAA +GAAGGTGGAGAGAGAGACAGAGACAGATTGGGACGATCAGTACCTGGATTCTTAGCAATT +ATCTGGGTCGACCTACGGAGCCTGTGCCTTTTCAGCTACCACCGCTTGAGAGACTTACTC +TGGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATAT +TGGTGGAATCTCCTGCAGTATTGGATTCAGGAACTAAAGAGTAGTGCTACTAGCTTGCTC +AACGCCACAGCCCTAGCAGTAGCCGAGGGAACAGATAGGGTTATAGAAGTAATACAAAGA +ATTGGTAGAGCTTTTCTCCATATACCTAGAAGAATAAGACAGGGCTTCGAAAGGGCTTTG +CAATAAAATGGGTGGCAAGTGGTCAAAATGTAGTATGGTTGGATGGCCTGCTGTAAGGGA +AAGAATAAGACACACTGAGCCAGCAGCAGAGGGGGTGGGAGCAGTATCTCGAGACCTGGA +AAGCCATGGAGCGATCACAAGTAGCAATACAGCTGCTAACAATGATGCTTGTGCCTGGCT +AGAAGCACAAGAGGAGGAGGAAGTGGGTTTTCCAGTCAAACCTCAGGTACCTTTAAGACC +AATGACTTACAAGGCAGCTTTGGATCTAAGCCACTTTTTAAAAGAAAAGGGGGGACTGGA +AGGGTTAATTTACTCCCAGAAGAGACAAGAGATCCTTGATCTGTGGATCTACCACACACA +AGGCTACTTCCCTGACTGGCAGAATTACACACCAGGGCCAGGGATCAGATTTCCACTGAC +CTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATGGAGGAGAGAACGACAGATT +GTTACACCCTGTGAGCCAGCATGGGATGGATGACACGGAGAGAGAAGTGTTGATGTGGAA +GTTTGATAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAA +GAACTGCTGACACCGAGCTTTCTACAAGGGACTTTCCGTTGGGGACTTTCCAGGGAGGGT +GTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGAAGCTGCATATAAGCAGCTGCTT +TTTG +>B.GB.2014.0.14592_1_57.3.MF109551 MF109551 +ATGGGTGCGAGAGCGTCGGTATTAAGCTGGGGAGAATTAGATCGATGGGAAAAAATTCGG +TTAAGGCCAGGGGGAAGGAAAAAGTATAAGTTAAAACATATAGTATGGGCAAGCAGGGAA +CTAGAACGATTTGCAGTTAACCCTGGCCTGTTAGAAACATCAGCAGGCTGTAAACAAATA +ATAAGACAGCTACAATCATCCCTTCAAACAGGATCAGAAGAGCTTAAATCATTGTATAAT +ACAGTAGCAGTCCTTTACTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCT +TTAGACAAGATAGAGGAAGAACAAAGTAAAAGTAAGAAACAGGTACAGCCAGCAGCAGCT +GACACAGGAAGCAGCAGCCAAGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGG +CAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAA +GAAAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACC +CCCGGCGATTTAAACACCATGCTAAACACAATAGGGGGACATCAAGCAGCTATGCAAATG +TTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGACTGCATCCAGTGCAGGCA +GGGCCTGTTGCACCAGGCCAGATAAGAGAACCAAGGGGAAGTGATATAGCAGGAACTACT +AGTACCCTTCAGGAACAAATAACATGGATGACAAGTAATCCACCCATCCCAGTAGGAGAA +ATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACC +AGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGATTATGTAGATCGGTTC +TATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAAGTAAAAAATTGGATGACAGAAACC +TTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGGA +GCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGGGGACCCAGCCATAAGGCA +AGAGTTTTGGCAGAAGCAATGAGCCAGGTAACAAATCCAGCCACCATAATGATGCAGAGA +GGCAATCCTAGAAACCAAAGAAAGACTATTAAATGCTTCAATTGTGGCAAAGAAGGGCAC +ACAGCCAGAAATTGCAAGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA +CACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCC +CACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCGATCAGCCCCACCAGAG +GAGAGCTTCAGGTTTGGGGAAGAGGCAGCAGCTCCCTCTCAGAGGCAGGAACCGATAGAC +AAGGAACTGTATCCTTTAGCCTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAA +TAAAGGTAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTAT +TAGAAGAAATAGATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTT +TTATCAAAGTAAGACAGTATGATCAAGTACCCATAGAAATTTGTGGACATAAAGCAATAG +GTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGC +TTGGTTGCACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGC +CAGGAATGGATGGCCCAAAAGTTAAGCAATGGCCATTGACAGAAGAAAAAATAAAAGCAT +TAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAA +ATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACGGTACTAAATGGAGGAAAT +TAGTAGATTTCAGAGAACTTAACAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAA +TACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATG +CATATTTTTCAGTTCCTTTAGATAAAGAATTCAGAAAGTACACTGCATTTACCATACCTA +GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTGCCACAAGGATGGA +AAGGATCACCAGCAATATTTCAAAGTAGCATGACAAAAATCTTAGAGCCTTTCAGAAAAC +AAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAG +AAATAGGGCAGCATAGAGCAAAAATAGAGGAACTGAGAGAACATCTGTTGAAGTGGGGGT +TTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAAC +TCCATCCTGATAAATGGACAGTACAGCCTATAACACTGCCAGAAAAGGACAGCTGGACTG +TCAATGACATACAGAAGTTAGTAGGAAAACTGAATTGGGCAAGTCAAATTTATGCAGGGA +TTAAAGTAAAGCAATTATGTAAGCTTCTTAGGGGAGCCAGAGCACTAACAGAAGTAGTAC +AACTAACAGAAGAAGCAGAACTAGAATTAGCAGAAAACAGGGAGATTCTAAGAGAACCAG +TACATGGGGTGTATTATGACCCAACAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGAC +AAGGTCAATGGTCATACCAAATTTATCAAGAGCCACATAAAAATCTGAAAACAGGAAAGT +ATGCAAGAACTAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAA +AAATAGCTACAGAGAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTGCCCATAC +AAAAGGAAACATGGGAAGCATGGTGGACGGAGTATTGGCAAGCCACCTGGATTCCTGAAT +GGGAGTTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAAAAAGAACCCA +TAGCAGGAGCAGAAACTTTCTATGTAGATGGAGCATCTAATAGGGAAACTAGAGTAGGAA +AAGCAGGATATGTTACTAACAAAGGAAGACAAAAGGTTGTCACCCTAAATGACACAACAA +ATCAGAAAACTGAGTTACAGGCAATTCAGCTAGCTTTGCAGGATTCAGGATCAGAAGTAA +ATATAGTGACAGACTCACAATATGCAATGGGAATCATTCAAGCACAACCAGATAGGAGTG +AATCAGAGATAGTCAATCAAATAATAGAGCAGCTAATAATGAAGGAAAGGGTCTATCTGG +CATGGGTACCAGCACATAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTG +CTGGAATCAGGAAAGTGCTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGA +AATATCATAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCTA +AAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAG +TAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATCC +TGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAG +GACAGGAAACAGCTTACTTCCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATCC +ATACAGACAATGGCAGCAATTTCACCAGTACTACAGTTAAAGCCGCCTGTTGGTGGGCAG +GGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTA +TGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGA +CAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGT +ACAGTGCAGGAGAAAGAATAGTAGACATAATAGCATCAGACTTACAGACTAAAGAACTAC +AGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAC +TTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATA +ATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAAC +AGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGCACAGT +ATAGTAAAACACCACATGTATATATCAAAGAAAGCTAAGAAATGGGTTTATAGACATCAC +TATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGA +TTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAG +GGGGTCTCCATAGAATGGAGGGAAAAGAGCTATAGCACACAAGTAGACCCTAACCTAGCA +GATCAACTAATTCACCTGTACTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAAAGCA +ATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGA +TCTCTACAATACTTGGCACTAACAGCATTAGTAACACCAAAAAGGGGAAAGCCACCTCTG +CCCAGTGTTACTAAATTAACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCAC +AGAGGGAACCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTG +TTAGACATTTTCCTAGGACGTGGCTTCATGGTTTAGGACAATATATCTATGCAACCTATG +GGGATACTTGGGCAGGAGTAGAAGCCCTAATAAGAATTCTGCAACAGCTGCTGTTTATTC +ATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTACGCAAAGGAGAACAAGAAATG +GAGCCCGTAGATCCTAGACTAGAGCCTTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCT +TGTAACAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAA +GGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAGACAACGACGAAGAACTCCTCAAAAC +AGTGAGACTCATCAAGTTTCTCTACCAAAGCAGTAAGTAGTGCATGTGATGNCTTTAATA +ATAGGATCAATAGTAGCATTAGTAATAGCACTAATAATAGCAATAGTTGTGTGGACCATA +GTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGATAATTGATAGA +ATAATAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGAAGGGGACCAGGAAGAATTGTCA +GCGCTTGTGGAGATGGGGCACCATGCTCCTTGGGATGTTAATGATCTGTAGTGCTGCAGA +CCAATTGTGGGTTACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTTT +ATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACA +TGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTATTGGAAAATGTGACAGAAAA +TTTTAACATGTGGAAAAATAACATGGTAAAACAAATGCATGAGGATATAATCAGTTTATG +GGATCAAAGTCTAAAACCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCAA +TGATTCTACTAACAAAACTAGCAGTAAGGGAGAAATAAAAAACTGCTCTTTTAATGTCAC +CACAAGCATAAGAGATAAGGTAAAGCAAGAATATGCACTGTTTTATAAAGTTGATATAGT +ACCAATNTATAGGTTGATAAATTGTAATACCTCAGTCATTACACAGTCCTGTCCAAAAGT +AACCTTTGAACCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTG +TAATGAAAAGAAGTTCAATGGATCAGGTCCATGTAAAAATGTCAGTACAGTACAATGTAC +ACATGGAATTAGGCCAGTAGTGTCAACTCAACTGCTGCTAAATGGCAGTCTAGCAGAAGA +TGAGGTAGTGATTAGATCTAGCAATTTCTCGGACAATACTAAAAACATAATAGTACAGCT +AAATGAAACTGTACAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACC +TATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAGTAGGAGATATAAGAAAAGC +ACATTGCATCATTAATGGAAGTGATTGGAGAAAAACTTTAGAAAAGGTAGTTGAAAAATT +AAGAGACCAATTTAACAAAACAATAACCTTTAGTCAACCATCAGGAGGGGATCCAGAAAT +TATAATGCACACTTTTAATTGTGGAGGGGAATTTTTCTACTGTGATACAACAAAACTGTT +TAATTCACACTCCCATGTAGAATAAAGCAAATTATAAACATGTGGCAAGAAGTGGGAAAA +GCTATGTATGCCCCTCCTATCCCAGGAATAATTAACTGTTTATCAAATATTACGGGGCTA +ATATTAACAAGAGATGGAGGNGAGATTTTCAGACCTGGAGGAGGAGATATGAGGGACAAT +TGGAGAAGTGAATTATATAAATATAAAGTAGTAGAAATTAAACCATTAGGAGTAGCACCC +ACCAAGGCAAAGAGAAGAGTGGTGCGGAGAGAAAAAAGAGCAGTGGGAATAGGAGCGATG +TTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACG +GTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCT +ATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATTAAGCAGCTCCAGGCA +AGAATCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTAGGGCTTTGGGGTTGC +TCTGGAAAACTCATTTGCCCCACTACTGTGCCTTGGAATACTAGTTGGAGCAATAAATCT +CTGAATAAGATTTGGAATAACATGACCTGGATGCAGTGGGAAAGAGAAATTGACAATTAT +ACAGGCCTAATATACACCTTAATTGAACAATCGCAGAACCAGCAAGAAATAAATGAACAA +GAATTATTGGAATTGGATAAGTGGGCAAATTTGTGGAATTGGTTTGACATAACAAACTGG +CTGTGGTATATAAAGATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTT +TTTGCTGTGCTTTCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTGTCATTGCAG +ACCCTCCTCCCAACCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGA +GAGAGAGGCAGAGATTCGTCCGTGAGATTAGTGAACGGATTCTTAGCGATTTTCTGGGAC +GACCTGCGGAACCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTA +GCGAGGATTCTGGGACTTCTGGGACGCAGGGGGTGGGAAGCTCTCAAATATTGGTGGAAT +CTCCTGCAGTATTGGAGTCAGGAATTAAAGAATAGTGCTGTTAGCTTGCTTAACGCCACA +GCTATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTAGTGCTAAGAGTTTATAGA +GCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGAGTTTTGCTATAAAAT +GGGTGGCAAGTGGTCAAAACTGGCTGGGTGGGCTACTGTAAGGGAAAGAATGAGAAGACA +ACAACAGAGAGGGTGGAAGCAGTATCTCGAGACCTGGAAAAACAAGGAGCAAGCGCTAGT +AGCAATACAGCAACTAATAATGCTGCTTGTGCCTGGCCAGAAGCACAAGAGGATGAAGTG +GGTTTTCCAGTCAGACCTCAGGTTCCTTTAAGACCAATGACTTACAAGGCAGCTCTAGAT +CTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCACAAAGAAGA +CAAGAGATCCTTGATCTGTGGATCTACCACACACAAGGCTACCTCCCTGATTGGCAGAAC +TACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTA +CCAATGGATCCAGAGCAAATAGAAGAGGCCAGCAAAGGAGAGAACAACTGCTTGCTACAG +GAGATGGATGACACAGAGAAAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCGTTC +CATCACATGGCCCGAGAGCTGCATCCGGAGTTTTACAACTGCTGA +>A1.RW.1993.0.93RW_024.AY713406 AY713406 +GCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGG +CCAGGGGGAAAGAAAAAATATAGAATGAAACATCTAGTGTGGGCAAGCAGGGAGCTGGAA +AGATTTGCACTTAACCCTAGCCTTTTAGAATCAACAGAAGGATGTCAACAAATAATAGAA +CAGTTACAACCAGCTCTTAAGACAGGAACAGAAGAAATTAAATCATTATATAATACAGTA +GCAACCCTCTACTGCGTACATCGAAGGATAGATGTAAAAGACACCAAGGAAGCTCTAGAT +AAAGTAGAGGAGATACAAAATAAGAGCAAGCAAAAGACTCAACAGGCAGCAGCTGACACA +GGAAACAGCAGCAGGAGCGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAA +ATGGTACACCAGCCCTTATCACCTAGGACTTTGAATGCATGGGTCAAAGTAATAGAAGAA +AAGGCTTTCAGCCCAGAAGTAATACCCATGTTCTCAGCACTATCAGAAGGAGCCACCCCA +CAAGATTTAAATATGATGCTGAATGTAGTGGGGGGACACCAGGCAGCTATGCAAATGTTA +AAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGTTACATCCAGTACATGCAGGG +CCTATTCCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGT +ACCCCTCAAGAACAAATAGGATGGATGACAGGCAATCCACCTATCCCAGTGGGAGACATC +TATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTTAGC +ATTTTGGATATAAAACAAGGGCCAAAAGAACCCTTCAGGGATTATGTAGATAGATTTTTT +AAAACACTCAGAGCTGAGCAAGCTACACAGGAGGTAAAAGGTTGGATGACAGAAACATTA +CTGGTCCAAAATGCAAATCCAGATTGTAAGTCCATTTTAAGAGCATTAGGACCAGGGGCT +TCATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGG +GTTTTAGCTGAGGCAATGAGTCAAGCACAACAGACAAACATAATGATGCAGAGAGGCAAT +TTTAGGGGCCAGAAAAAGATTAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCTAGA +AATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGGAAGGAGGGACACCAAATG +AAAGACTGCTCTGAAAGACAAGCTAATTTTTTAGGGAGAATTTGGCCTTCCAGCAAGGGG +AGGCCAGGAAATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGCTCCTT +GGGATGGGGGAAGAGATAGCCCCCCCTCCGAAGCAGGAGCAGAAAGACAGGGAACAGGGC +CCACCTTTAGTTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAATAAAAATAG +GGGGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGACACAGTTTTAGAAGACA +TAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGGGGTTTCATCAAAG +TAAGACAGTATGATCAGATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTAT +TAGTAGGACCTACACCTGTCAACATAATTGGAAGGAATATGTTGACCCAGATTGGTTGTA +CTTTAAATTTCCCAATTAGTCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGG +ATGGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAA +TTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACA +ATACTCCAATATTTGCTATAAAGAAAAAGGACAGCACTAAATGGAGAAAATTAGTAGATT +TCAGAGAGCTCAATAAAAGAACACAAGACTTTTGGGAAGTTCAATTGGGGATACCGCACC +CAGCGGGCCTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGGGACGCATATTTTT +CAGTTCCTTTAGATGAAGACTTTAGAAAATATACTGCATTTACCATACCTAGTACAAACA +ATGAGACACCAGGAATCAGGTATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCAC +CGGCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGATCAAGAAATCCAG +ACATAATTATCTATCAATACATGGATGACTTATATGTAGGATCTGATTTAGAAATAGGGC +AGCATAGAGCAAAAATAGAAGAGTTAAGAGCTCATCTATTGAGCTGGGGATTTACTACAC +CAGACAAAAAGCATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAGCTCCATCCTG +ACAAGTGGACAGTCCAGCCTATAGTGCTGCCAGAGAAGGAAAGCTGGACTGTCAATGATA +TACAGAAATTAGTAGGGAAACTAAATTGGGCAAGTCAAATTTATGCAGGAATTAAAGTAA +AGCAATTGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGAGATAGTAACATTGACTG +AGGAAGCAGAATTAGAATTGGCAGAGAACAGGGAGATTCTAAAAGAACCTGTGCATGGAG +TATATTATGATCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGCAAGACCAAT +GGACATACCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCAAGAA +AAAGGTCTGCACACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAGGTGGTCA +TGGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAGA +CATGGGAAACATGGTGGATGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTG +TCAATACCCCTCCTCTAGTAAAACTATGGTACCAGTTAGAGAAGGACCCCATAGAAGGAG +CAGAGACTTACTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGT +ATGTCACTGACAGAGGAAGACAAAAGGTTATTTCCCTAGCTGAGACAACAAATCAAAAGA +CTGAACTACATGCAATCCATCTAGCCTTGCAGGATTCAGGATCAGAAGTGAACATAGTAA +CAGACTCACAGTATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGGGT +TAGTCAATCAGATAATAGAGAAATTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTAC +CAGCACACAAGGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCCGGAATCA +GGAAGGTGCTGTTTTTAGATGGGATAGATAAAGCTCAAGAAGAACATGAAAGATATCACA +GTAATTGGAGAACAATGGCTAGTGATTTTAATCTGCCACCTGTAGTAGCAAAAGAAATAG +TAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGCA +GTCCAGGGATATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATTCTAGTAGCAG +TCCATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGA +CAGCCTACTTTCTACTAAAATTAGCAGGCAGATGGCCAGTAAAAGTAGTACACACAGACA +ATGGTAGCAATTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCAAATATCCAAC +AGGAATTTGGGATCCCCTACAATCCCCAAAGTCAAGGGGTAGTAGAATCTATGAATAAGG +AATTAAAGAAAATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTAC +AAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAG +GGGAAAGAATAATAGACATAATAGCAACAGATATACAAACTAAAGAATTACAAAAACAAA +TTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAATTTGGAAAG +GACCAGCAAAACTACTTTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGATA +TAAAGGTAGTACCAAGAAGAAAAGTAAAGATCATCAGGGATTATGGAAAACAGATGGCAG +GTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAA +CATCATATGTATGTCTCAAAGAAAACAAAGAATTGGTTTTATAGACATCACTATGAAAGC +AGACATCCAAGAGTAAGCTCAGAAGTACACATCCCACTAGGGGATGCTAGACTAATAGTA +AGAACATATTGGGGTCTGCATACAGGAGAAAAAGACTGGCACTTGGGGCATGGGGTCTCC +ATAGAATGGAGGCTAAAAAGATATAGCACACAAATAGATCCTGACCTGGCAGACCAACTA +ATTCATCTGCATTATTTTGACTGTTTTTCAGAATCTGCCATAAGGAGAGCCATATTAGGA +CAAGTAGTTAGCCCTAGTTGTGAATATCACACAGGACATAACCAGGTAGGATCCCTACAA +TATTTAGCACTGAAAGCATTAGTAACACCAACAAAGACAAGGCCACCTTTGCCTAGTGTT +AGGAAATTAGCAGAGGATAGATGGAACAAGCCCCGGAAGACCAAGGACCACAGAGGGAGC +CATACAATGAATGGATGTTAGAGCTGTTAGAAGATCTTAAGCATGAAGCCGTTAGACATT +TTCCTAGACCATGGCTTCATGGATTAGGACAACATATCTATGAAACCTATGGGGATACTC +AGGAAGGAGTTGAGGCTATAGTAAGAATTCTGCAACAACTACTGTTTGTTCATTTCAGAA +TCGGGTGCCAACATAGCAGAATAGGCATTATTCCAGGGAGAAGAGGCAGGAATGGATCCA +GTAGATCCTAACCTAGAGCCCTGGAACCATCCGGGAAGTCAGCCTACAACTGCTTGTAAC +AAGTGTTACTGTAAAAAGTGTTGCTATCATTGTCCAAGTTGCTTTTTGAACAAAGGCTTA +GGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAGGAACTCCTCAAAGCAGTAAG +GATCATCAAAATCCTATACAAAAGCAGTAAGTAATTAGCATATGTAATGCAGTCTTTGGA +AATCTGTACAATAGTAGGATTCATAGTAGCGCTAATCCTAGCAATAGTTGTGTGGACTAT +AGTAGGAATAGAATATAAGAAAGTGCTAAGACAAAGAAAAATAGACAGGATAATTGAGAG +AATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGATGGGGATACAGAGGAATTATC +AGCACTTGTTAGAATGGGGAACTATGATCTTGGGGATGATAATATTCTGTAGTGCTGTAG +AAAACTTGTGGGTTACTGTCTACTATGGGGTACCGGTGTGGAAAGATGCAGAGACCACCC +TATTTTGTGCCTCAGATGCTAAAGCATATGAGACAGAAGTGCATAATGTCTGGGCTACAC +ATGCCTGTGTGCCCACAGACCCAAACCCACAAGAAATACCTTTGGAAAATGTGACAGAAA +AGTTTAACATGTGGAAAAATTATATGGTAGAGCAGATGCATACAGATATAATCAGCCTAT +GGGATGAAAGCCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGCGTTACTTTAAATTGTA +GCGATGCCATTGGCAACTTTACAAATATCAAGGAAGAAATAACAAACTGCTCTTTCAATG +TGACCACAGAACTAAGGGATAAGACAAAGAAAGTACATTCACTTTTTTATAGACTTGATA +TAGTACCACTTAATGAATATAGTAGTAGCAATAAAAGTAGTAACAATAATAATAGTAGCC +AGGAATATGTATTAATAAATTGTAATACCTCAGCCATTACACAAGCCTGTCCAAAGGTAA +CCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATCCTAAAGTGTA +AGGACACAGATTACAATGGAACAGGGCCATGCAGGAATGTCAGCACAGTACAATGCACAC +ATGGAATCAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGCCTAGCAGAAAGAA +ATGTAACAATTAGATCTGAAAATATCACAAACAATGCCAAAACCATACTAGTACAACTTG +TCAAGCCTGTGAGAATTAATTGTACCAGACCTTATAACAATACATTCAGAAGGGTACGTA +TAGGACCAGGACAATCATTCCATGCATCAGATAACATAGTAGGGGATATAAGAAAAGCAC +ATTGTAATGTTAGTAGATCAGAATGGAATGAAACTTTACAACAGGTAGTTACTCAATTAA +GAGGGTACTTTGGGAACAAGACAATAGTCTTTACTAAGCCCTCAGGAGGGGATCTAGAAA +TCATAACACATAGTTTTAATTGTAGAGGAGAATTTTTCTATTGTAATACATCAAGCCTGT +TTAATAGCACTTGGAATAACACTGCCAGCATGCAGAAGTCAAATAGCACGGGGTCAAATG +ACACTATAACTCTCCAATGCAGAATAAAGCAAATTATAAGAATGTGGCAAAGAACAGGAC +AGGCAATGTATGCCCCTCCCATCAAAGGAGATATAAGGTGTGAATCAAACATTACAGGAC +TAATATTAACAAGAGATGGTGGGAATGATAGCAGTCCAGATGAAATCTTCAGACCTGGAG +GAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAGTACAAATTG +AACCTCTAGGAGTAGCACCCACCAAGGCAAGAAGAAGAGTGGTGCAGAGAGAGAAAAGAG +CAATTGGAATAGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCG +CGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGCATAGTGCAACAGC +AAAGCAATTTGCTGAGGGCTATAGAGGCTCAACAACATCTGTTGAAACTCACGGTCTGGG +GCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGC +TCCTAGGAATTTGGGGTTGCTCTGGGAAACTCATCTGCACCACTAATGTGCCCTGGAATA +CTAGTTGGAGTAAAAATAAATCTCTGAGTGAAATATGGGATAACATGACCTGGCTGCAAT +GGGATAAAGAAATTAGCAATTACACAAACCTAATATATAACCTAATTGAAGAATCGCAGA +ACCAGCAGGAAAAGAATGAACAAGACTTATTAGCATTGGATAAGTGGGCAAATCTTTGGA +CTTGGTTTGACATATCAAATTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAG +GCTTAATAGGATTAAGAATAGTTTTTGCTGTGCTTACTGTAATAAATAGAGTTAGGCAGG +GATACTCACCTTTGTCATTTCAGATCCATACCCCAAACCCAGGGGATCCCGACAGGCCCG +GAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAAACAGATCGATTCGATTAGTAAGCG +GATTCTTAGCGCTTGCCTGGGACGATCTGCGGAGCCTGTGCCTTTTCTGCTACCACCGCT +TGAGGGACTTCACCTTGATTGCAGCGAGGACTGTGGAACTTCTGGGACACAGCAGTCTCA +AGGGGTTGAGACTGGGGTGGGAAGGCCTCAAGTATCTTGGGAATCTCCTGTTGTATTGGG +GTCAGGAACTGAAAAATAGTGCTATTAATTTGTTTGATACCATAGCAATAGCAGTAGCTG +GCTGGACAGATAGGGTTATAGAAGTAGGACAAAGAGTTGGTAGAGCTTTGCTCCACGTAC +CTAGAAGGATCAGACAGGGCTTTGAAAGGGCTTTGCTATAACATGGGTGGCAAGTGGTCA +AAAAGTAAAATGGGCTGGCCTGAGATTAGGGAAAGAATGAGACGCGCTCCTGCTCCTTCA +GCAGCAACAGGAGTAGGAGCAGTATCTCAAGATTTAGCTAGACATGGAGCAGTCACAAGC +AGCAATACCAATCACCCTAGTTGCGTCTGGCTGGAAGCGCAAGAAGAAGAGGAGGAGGTA +GGCTTTCCAGTCAGGCCACAAGTGCCTCTAAGACCAATGACTTACAAGGCAGCTGTGGAT +CTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCAGGAGAAGA +AAAGACATCCTTGATCTGTGGGTCTACCACACACAAGGATTCTTCCCTGATTGGCAAGAA +TACACACCAGGGCCAGGGACCAGATACCCACTAACGTTTGGATGGTGCTTCAAGCTAGTA +CCAGTTGATCCAGATGAAGTAGAGAAGGAGACTGAAGGAGAGAACAACAGCCTATTACAC +CCTATATGCCAACATGGAATGGATGATGAGGAGAAAGAAGTGTTAAAGTGGGTGTTTGAC +AGCCGCCTGGCACTGAAACACAGAGCCCAAGAGCTGCATCCGGAGTTCTACAAAAACTGA +TGACACAGAAGATGCTGACAGGGACTTTCTGCTGGGGACTTTCCAGGGGAGGTGTGGTTT +GGGCGGAGTTGGGGAGTGGCTAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCT +GTACTGGGTCTCTCTTGGTAGACCAGATTGAGCCTGG +>A1.TZ.2005.0.CO0439V5.KX907347 KX907347 +GATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAGAAAATTCG +GTTAAGGCCAGGGGGAAAGAAAAAATATAGAATGAAACACCTAGTATGGGCAAGCAGGGA +GCTGGAAAGATTTGCACTTAATCCTAGCCTTTTAGAAACAACAGAAGGATGTCAACAAAT +CATGGAACAGTTACAACCAGCTCTCAAAACAGGAACAGAAGAACTTAGATCATTATTTAA +TACAGTAGCAACCCTCTATTGTGTACATCAACGGATAGGGGTAAAAGACACCAAGGAAGC +TCTAGATAAAGTAGAGGAAATGCAAAATAAGAGCAGGCAAAAGGCACAACAGGCAGCGGC +TGATACAGGAAACAGCAGCAAAGTCAGCCAAAATTATCCTGTAGTGCAGAATGCACAAGG +GCAAATGACACACCAGTCCTTGTCACCTAGGACTTTGAATGCATGGGTAAAAGTAATAGA +AGAAAAGGCTTTTAGCCCAGAAGTGATACCCATGTTTTCAGCCTTATCAGAAGGAGCCAC +CCCAGGTGATTTAAATATGATGCTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAAT +GTTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGTTACATCCAGTACATGC +AGGGCCTATTCCACCAGGCCAATTGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTAC +TAGTACCCCTCAAGAACAAATAGGGTGGATGACAGGCAACCCACCTATCCCAGTGGGAGA +CATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGT +TAGCATTTTGGATATAAGACAAGGGCCAAAAGAACCCTTCAGAGATTATGTAGACAGGTT +CTTTAAAGTTCTCAGAGCTGAGCAAGCTACACAGGAGGTAAAAAATTGGATGACAGAAAC +ATTGTTGGTCCAAAATGCAAATCCAGACTGTAAGTCCATTTTAAGAGCATTAGGACCAGG +GGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGTCATAAAGC +AAGGGTTTTGGCTGAGGCAATGAGTCAAGTACAAAATACAAACATAATGATGCAAAGGGG +CAATTTTAGGGGCCAGAAAAGGATTAAGTGTTTTAACTGTGGGAAAGAAGGACACCTAGC +CAGAAATTGCAAGGCCCCTAGGAAAAAGGGCTGTTGGAAGTGTGGAAAGGAGGGACACCA +AATGAAAGACTGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAA +GGGAAGGCCAGGAAATTTTCCTCAGAGCAGACCAGAGCCATCAGCCCCACCAGCAGAGAG +CTTCGGGATGGGGGAAGAGATAACCTCCCCTCCGAAGCAGGAACAGAAAGACAGCCCACC +TTTAACTTCCCTCAGATCACTCTTTGGCAACGACCTCTTGTCACAGTAAGGATAGGGGGA +CAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAAT +TTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAA +CAATATGATCAGATACTTATGGAAATTTGTGGAAAAAAGGCTATAGGGACAGTATTAGTA +GGACCTACACCCGTCAACATAATTGGAAGAAACATGTTGACCCAGATTGGTTGCACTTTA +AATTTCCCAATTAGTCCTATTGAGACTGTACCAGTAAAGTTAAAGCCAGGAATGGATGGC +CCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAGGCATTGACAGAAATTTGT +ACAGAAATGGAAAAGGAAGGAAAAATTTCAAAGATTGGGCCTGAAAATCCATACAATACT +CCAATATTTGCAATAAAGAAAAAAGACAGCACAAAATGGAGAAAGTTAGTAGATTTCAGG +GAGCTCAATAAAAGAACACAAGACTTTTGGGAAGTTCAATTAGGAATACCGCATCCAGCG +GGCCTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTT +CCTTTAGATGAAGAGTTTAGGAAGTATACTGCTTTCACCATACCTAGTACAAACAATGAG +ACACCAGGAATCAGGTATCAATACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCA +ATATTCCAGAGTAGCATGACAAAAATTTTAGAACCCTTTAGAGCAAAAAATCCAGAAATA +ATTATCTATCAATACATGGATGACTTGTATGTGGGATCTGATTTGGAAATAGGACAGCAC +AGGACAAAAATAGAAGAATTGAGAGCTCATCTATTGAGCTGGGGGTTTACTACACCAGAC +AAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAGCTCCATCCTGACAAG +TGGACAGTCCAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGATATACAG +AAACTAGTGGGGAAACTAAATTGGGCAAGTCAAATTTATGCAGGGATTAAAGTAAAGCAA +TTGTGTAGACTCCTCAGGGGAGCCAAGGCACTAACAGAGACAGTAACATTGACTGAAGAA +GCAGAATTAGAATTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATAC +TATGACCCATCAAAAGACTTAGTAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACA +TACCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCAAGAAAAAGG +TCTGCTCACACTAATGATGTAAAACAGTTAGCAGAAGTGGTACAAAAGGTGGTCATGGAG +AGCATAGTAATATGGGGAAAGAGTCCTAAATTTAAATTACCCATACAAAAGGAGACATGG +GAAACATGGTGGATGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTTAAT +ACCCCTCCTCTAGTAAAATTATGGTACCAATTAGAGAAAGACCCCATAATAGGAGCAGAG +ACTTTCTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTC +ACTGACAGAGGAAGACAAAAGATTGTTTCCCTAATTGAGACAACAAATCAAAAGACTGAA +CTACATGCAATCTATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAACATAGTAACAGAC +TCACAGTATGCCTTAGGAATCATTCAGGCACAGCCAGACAGGAGTGAATCAGAGCTAGTC +AGTCAAATAATAGAGAAGTTAATAGAAAAGGACAAAGTCTATCTGTCATGGGTGCCAGCA +CACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCCGGAATCAGGAAG +GTGCTGTTTTTAGATGGGATAGATAAAGCTCAAGAAGACCATGAAAGATATCACAGCAAT +TGGAGAGCAATGGCTAGTGATTTTAATCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCT +AGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGCAGTCCA +GGGATATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATTCTAGTAGCAGTTCAT +GTAGCCAGTGGCTATATAGAGGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACCGCA +TACTTTATACTAAAATTAGCAGCAAGATGGCCAGTAAAAATAATACACACAGACAATGGC +AGCAATTTCACTAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCAGATATCCAACAGGAA +TTTGGGATTCCCTACAACCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGGAATTA +AAGAAAATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTACAAATG +GCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAA +AGAATGATAGACATGATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACA +AAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCA +GCAAAACTACTTTGGAAAGGTGAAGGGGCAGTAGTGATACAGGATAATAGTGATATAAAG +GTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGAT +GATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAATAGTTTAGTAAAACATCA +TATGTATATCTCAAAGAAAGCTAGGAATTGGTTTTATAGACATCACTTTGAAAGCAGGCA +TCCAAGAGTAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAGATTAGTAGTAAAGAC +CTATTGGGGTCTACATCCAGGAGAAAAGGACTGGCAATTGGGTAATGGGGTATCCATAGA +ATGGAGGCTAAAAAGATATAACACACAAATAGATCCTGAGCTGGCAGACCAACTAATTCA +TCTGCATTATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAAGCCATATTAGGACAAGT +AGTTAGCCCTATATGTGAATATCAAGCAGGACATAGCAAGGTAGGATCTCTACAATATTT +AGCACTGAAAGCATTAGTAACCCCAACAAAGACAAAGCCACCTTTGCCTAGTGTTAGGAT +ACTAGCGGAGGATAGATGGAACAAGCCCCGCAAGACCAGGGGCCCCAGAGGGAACCCTAC +AATGAATGGATGTTAGATCTGTTAGAAGAGCTTAAGCATGAAGCCGTTAGACATTTTCCT +AGACCATGGCTTCATGGATTAGGACAACATATCTATAACACCTATGGGGATACTTGGGAA +GGAGTTGAAGCTATAGTGAGAATGCTGCAACAATTACTGTTTGTTCATTTCAGAATTGGG +TGCCAACATAGCAGAATAGGCATTATTCGGGGGAGAAGAGGCAGGAATGGACCCGGTAGA +TCCTAACCTAGAGCCTTGGAACCACCCAGGAAGTCAGCCTGCAACTCCTTGTAGCTCGTG +TTACTGTAAAGTGTGTTGCTATCATTGCCCAGTTTGCTTTTTGAACAAAGGCTTAGGCAT +CTCCTATGGCAGGAAGAAGCGGAAGCAGCGACGACGAACTCCTCAAAGCGATAAGGATCA +TCAAAATCCTATACAAAAGCAGTAAGTATATGTAATGTGGGACTCTTTGTCTATCTGTGC +AGTAGTAGGACTGATAGTAGCGCTAATCCTAGCAATAGTTGTGTGGACCATAGTAGGTAT +AGAATATAAGAAATTGCTAAAACAAAGAAAAATAGACAAGTTAATTGAAAGAATAAGAGA +AAGAGCAGAAGACAGTGGCAATGAGAGTGATGGGGATACAGAGGAATTGTCAACACTTAT +TGAGATGGGGAACCTTGATTTTGGGGTTGATAATAATCTGTAGTACTGCAGACAAGTTGT +GGGTTACTGTATACTATGGGGTACCTGTGTGGAAAGATGCAGAGACCACCTTATTCTGTG +CATCAGACGCTAAAGCATATGACAAAGAAAAGCATAATGTCTGGGCTACGCATGCCTGTG +TACCCACAGACCCTAACCCACAAGAAATACATTTGGAAAATGTGACAGAAGAGTTTAACA +TGTGGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATCAGTCTATGGGATCAAA +GCCTTAAGCCATGTGTAAAGCTAACCCCTCTCTGCGTTACTCTAAATTGTAGCCACAACA +TTACTAGGCTCAACACCAGTAGTCCCAACATCACAGGAAACGACACAAACAGTAGTCCCA +ACATCACAGAAAACGACACAGAAAACGAAAGGAAAAACTGCTCTTTCAATATAACCACAG +AATTAAGGGATAAGAGCAAACAAGTATATTCACTTTTTTATAGACTTGATATAGTACCAA +TTGATGGTAGTGACAATAGCAGTGACAATAGCAATAATTATAGATTAATAAATTGTAATA +CCTCAGCCATTACACAGGCTTGCCCAAAAGTGTCCTTTGAGCCAATTCCCATACATTATT +GTGCCCCAGCTGGTTTTGCGATTCTAAAATGTAAGGATGGAAATTTCAGTGGAAAAGGGC +CATGCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGTAGTATCAACTC +AACTGCTGTTAAATGGCAGTCTAGCAGAAGAAAAGGTAAAAATTAGATCTGAAAATATCA +GTGACAATACCAAAAACATAATAGTACAACTTGTCCAACCTGTGAAGATTAACTGTACCA +GACCTGACAACAACACAAGAAAGAGTATACATATAGGACCAGGACAAGCATTCTTTGCAA +CAGGTGCCATAATAGGGAAGATAAGACAAGCACATTGTAATGTCAGTAAAACAGAATGGA +ATAAAGCTTTAAAACAGGTAGTTGAACAATTAAGAAGAGACTTTGGAAACAAAACAATAA +TATTCAAAAACTCCTCAGGAGGAGATCTAGAAATCACAACACATAGTTTCAATTGTGGAG +GAGAATTTTTCTATTGTAATACATCAGGCCTGTTTAATAGCACTTGGCTGTCTAATAGTA +CTAACAGCACGGATAACACGGGGACAAATGACACTATAACTCTCCAATGCAGAATAAAGC +AAATTATAAATATGTGGCAAAGAGTAGGACAAGCAATGTATGCCCCTCCCATCCCAGGAG +TAATAAGGTGTGAATCAAACATTACAGGACTAATGTTAACAAGAGATGGTGGGAATAATG +CTACCAATGAAACCTTTAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAAT +TATATAAGTATAAAGTAGTAAAAATTGAACCACTAGGAGTAGCACCCACCAAGGCAAAGA +GAAGAGTGGTGGAGAGAGAAAAAAGAGCAGTTGGAATAGGAGCTGTCTTCCTTGGGTTCT +TAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGAC +AATTATTGTCTGGCATAGTGCAACAGCAAGGCAACTTGCTGAGGGCTATAGAGGCTCAAC +AACATCTGTTGAAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCGAGAGTCCTGGCTG +TGGAAAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCA +TCTGCACCACTACTGTGCCCTGGAACTCTAGCTGGAGCAATAAATCTTACGATGATATAT +GGGAGAACATGACCTGGCAGCAATGGGAGCGGGAAATTAGCAATTACACAGATATAATAT +ACAGATTGATTGAAGACTCGCAGAACCAGCAGGAAATGAATGAAAAAGACTTATTGGCAT +TAGACAAGTGGGCAAGTCTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAA +AAATATTTATAATGATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTGCTGTGCTTG +CTATAATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCGTTCCAGACCCATACCCCAA +GCCCAAGGGATCTCGACAGGCCCGGAAGAATCGAAGAAGAAGATGGAGAGCAAGACAGAA +CCAGATCGATTCGCTTAGTGAGCGGATTCTTAGCGCTTGCCTGGGACGATCTGCGGAGCC +TGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTCATCTTAATTGCCACGAGGACTGTGG +AACTTCTGGGACACAGCAGTCTCAAGGGGCTGAGACTGGGGTGGGAAGGCCTCAAGTATC +TGTGGAATCTCCTGTTATATTGGGGACGGGAACTAAAGAATAGTGCTATTAATTTGGTTG +ATACCATAGCAATAGTAGTAGCTGGCTGGACAGATAGGGTTGTAGAAATAGGACAAAGAT +TTGGTAGGGCTATCCTCTACATACCTAGAAGAATAAGACAGGGCTTAGAAGGGGCTTTGC +TATAACATGGGTGGCAAGTGGTCAAAAAGCAGCAGAGTGGGATGGGCTGAGATTAGAGAA +AGAATGAGACGTACTCCTGCAGCAGCACCAGGAGTAGGAGCAGTATCTCAAGATTTAGAT +AAGCATGGAGCAATCACAAGTACTAATGTAAATCACCCTAGTTGTGCCTGGCTGGAAGCG +CAGGAAGAGGATGAGGAGGTAGGCTTTCCGGTCAGGCCACAAGTACCTCTGAGACCCATG +ACTTACAAGGCAGCTGTTGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGG +TTAATTTACTCCAAGAAAAGACAAGACATCCTTGATCTGTGGGTCTACCACACACAAGGC +TTCTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGGAAAGATTCCCACTAACATTT +GGATGGTGCTTCAAACTAGTACCAGTTGATCCAGATGAAGTAGAGAAGGCCAATGAGGGG +GAGAACAACTGTCTATTACACCCGATATGCCAACATGGAATGGATGATGATGACAGAGAA +GTGTTAAAGTGGAAGTTTGACAGTCGCCTGGCACTAAAACACAGAGCCCGAGAGCTGCAT +CCGGACTTCTACAAAGACTGCTGACACAGAGATTGCTGACAGGGACTTTCCGCTGGGGAC +TTTCCAGGGGAGGTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAA +>A1.TZ.2012.0.30924v01_01.MN791964 MN791964 +ATGGGTGCGAGAGCGTCAATATTAAAGGGGGGAAAATTAGATGCTTTGGAGAAAATTCGA +TTAAGGCCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAATATGGGCAAGCAGGGAG +CTGGAAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAGCAAATA +ATAGGACAGTTACAATCAGCTCTCAGGACAGGGACAGAAGAATTGAGATCATTATATAAT +ACAGTAGTAACCCTTTACTGTGTACATCAAGGGATAGATGTAAAAGACACTAAGGAAGCT +CTAGATAAAATAGAAGAAATACAAACTAAGAGCAAGCAACAGACACAGCAGGCAGCAGCC +GCAGGAAGCAGCAGCCAGGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAA +ATGATGCACCAGAACTTGTCACCTAGGACTTTAAATGCATGGGTGAAAGTAATAGAAGAA +AAGGGTTTTAGCCCAGAAGTGATACCCATGTTCACAGCATTATCAGAAGGAGCTACCCCA +CAAGATTTAAATGTGATGCTAAACATAGTGGGGGGACACCAGGCAGCTATGCAGATGTTA +AAAGACACCATCAATGAAGAAGCTGCAGAATGGGACAGGTTACATCCAGTACAGGCAGGG +CCTATTCAACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGC +ACCCCTCAAGAACAAATACAATGGATGACGAACAACCCACCTATCCCAGTGGGAAACATT +TATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAAAATGTATAGCCCTGTTAGC +ATTCTGGATATAAAACAAGGGCCAAAAGAACCCTTCAGGGACTATGTAGATAGGTTCTTT +AAAACTCTCAGAGCTGAGCAGGCTACACAGGAGGTAAAAGGATGGATGACAGAAACATTA +CTGGTCCAAAATGCAAATCCAGATTGTAAGTCCATTTTAAGAGCATTAGGAGCAGGGGCT +ACATTAGAAGAGATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCACAAAGCAAGG +GTTCTGGCTGAGGCAATGAGTCAAGTACAACAGCCAAATATAATGTGGCAGAGAGGCAAT +TTTAAGGGACAGAAAAAGATTAAGTGTTTTAACTGTGGCAAAGAGGGACATCTAGCCAGA +AATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAGGGACACCGAATG +AAAGATTGCACAGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCGGCAAGGGG +AGGCCAGGGAATTTTCCTCAGAACAGACTGGAGCCAACAGCCCCACCAGCAGAGCTCTTT +GGGATGGGGGAAGAGATGACCTCCCCTCAGAAGCAGGAGCAGAGAGACAAGGAATCGACC +CCACCTTCAGTTTCCCTCAAATCACTCTTTGGCAACGACCTCTTGTCACAGTAAAAATAG +GGGGACAGCTAAAAGAGGCTCTATTGGATACAGGAGCAGATGATACAGTATTAGAAGACA +TAAATTTGCCAGGAAAATGGAGACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAG +TAAAACAGTATGATCAAATATCTATAGAAATTTGTGGGAAAAAGGTTATAGGTACAGTAT +TAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACCCAGCTTGGTTGTA +CTTTAAATTTCCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGG +ATGGCCCAAGGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAA +TTTGTACAGAGATGGAGAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACA +ATACTCCAATCTTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGGAAATTAGTAGATT +TTAGAGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTGGGAATACCGCATC +CAGCGGGCCTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTCT +CAGTCCCTTTATATGAAGACTTCAGAAAATATACTGCGTTCACCATACCTAGTACAAATA +ATGAGACACCAGGAGTTAGGTATCAGTATAATGTGCTTCCACAGGGATGGAAAGGATCAC +CAGCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGATCAAAAAATCCAG +AAATAATTATCTATCAATACATGGATGACTTGTATGTAGGATCTGATTTAGAAATAGGGC +AGCATAGAACAAAAATAGAAGAGTTAAGAGCTCATCTGTTGAGCTGGGGATTTACTACCC +CAGACAAAAAGCATCAGAAAGAACCACCATTTCTTTGGATGGGATATGAACTCCATCCTG +ACAAATGGACAGTCCAGCCTATAGAGTTGCCAGAAAAAGAAAGCTGGACTGTCAATGATA +TACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAA +AGCAGTTGTGTAAGCTCCTCAGAGGAGCCAAAGCACTAACAGATATAGTAACAATGACTG +AGGAGGCAGAATTAGAGTTGGCAGAAAACAGGGAGATTCTAAAAGACCCTGTGCATGGGG +CATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAGGGGCAGGACCAAT +GGACATATCAAATTTATCAGGAGCCATTTAAAAATCTAAAGACAGGAAAATATGCAAGAA +AAAGGTCTGCTCACACTAATGATGTAAAACAATTATCAGAAGTGGTGCAAAAGGTGGTCA +TGGAAAGCATAGTAATATGGGGAAAGACTCCCAAATTTAAATTACCCATACAAAAAGAAA +CATGGGAAACATGGTGGATGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTG +TCAATACCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGTAGGAG +CAGAGACTTTCTATGTAGATGGGGCAGCTAATAGGGAGACTAAGCTAGGAAAAGCAGGGT +ATGTCACTGACAGAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACAAATCAAAAGA +CTGAACTACATGCAATCCATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAATATAGTAA +CAGACTCACAATATGCATTAGGGATCATTCAGGCACAACCAGACAAAAGTGAATCAGAGT +TAGTCAATCAAATAATAGAGAAGCTGATAGGAAAGGACAAAGTCTACCTGTCATGGGTAC +CAGCACACAAAGGAATTGGAGGGAATGAACAGGTAGATAAATTAGTCAGCTCTGGAATCA +GAAAGGTGCTGTTTTTAGATGGGATAGATAAGGCCCAAGAAGACCATGAAAGGTATCACA +GCAATTGGAGAGCAATGGCTAGCGATTTTAATCTGCCACCTATAGTAGCAAAAGAAATAG +TAGCCAGCTGTGATAAATGTCAACTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTA +GTCCAGGGATGTGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATCTTGGTAGCAG +TCCATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGA +CAGCATACTTTCTGCTAAAATTAGCAGGTAGATGGCCAGTAAAAGTAGTACACACTGACA +ATGGTAGCAATTTCACCAGCGCTGCATTTAAAGCAGCCTGTTGGTGGGCAAATGTTCAAC +AAGAATATGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGG +AATTAAAGAAAATCATAGGGCAGGTGAGAGAGCAAGCTGAACACCTTAAGACGGCAGTAC +AAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACACTGCAG +GGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAAAATA +TTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAATTTGGAAAG +GACCAGCCAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGAGA +TAAAGGTAGTACCAAGAAGAAAAGCAAAAATCCTTAGGCATTATGGAAAACAGATGGCAG +GTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTATAGTAAAA +CATCATATATATAGCTCAAGGAGAGCTACAGGATGGTTTTATAGACATCACTTCGAAACA +AGGCATCCAAAAGTAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAGATTAGTAGTA +AAAACATATTGGGGTCTGCAACCAGGAGAACAAGATTGGCAGTTGGGTCATGGGGTCTCC +ATAGAATGGAGGCTAAGAAAGTATAGCACACAAATAGATCCTGACATGGCAGACCAACTA +ATTCATCTGCATTATTTTAATTGTTTTTCAGACTCTGCCATAAGGAAAGCCTTATTAGGA +CAAGTAGTTAGCCCTAGTTGTGACTATCAAGCAGGACATAACAAGGTAGGATCTCTACAA +TATTTGGCACTGAAAGCATTAGTAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTT +AAGAAGCTAACAGAGGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGC +CATTCAATGAATGGACATTAGAACTGTTAGAAGAGCTAAAGCATGAAGCTGTTAGACATT +TTCCTAGGCCATGGCTTCATGGGTTAGGACAATATATCTATGAGACCTATGGGGATACTT +GGGAAGGAGTTCAAGCTATAATAAGAATTTTGCAACAATTGCTGTTTATCCATTTCAGAA +TTGGGTGCCAACATAGCAGAATAGGCATTATTCCAGGGAGAAGAGGCAGGAATGGATCCA +GTAGATCCTAACCTAGAGCCCTGGAATCATCCGGGAAGTCAGCCTACAACTGCTTGTAGC +AAATGTTACTGCAAAGTGTGTTGCTATCATTGCCAAGTTTGCTTTCTGAACAAAGGCTTA +GGCATCTCCTATGGCAGGAAGAAGCGGAAACAGCGACGAGGACCTCCTCGCAGCAATAAA +GGTCATCAAAATCCTATACCAGAGCAGTAAGTAACAATAGTTAATATATGTAATGACTCT +TTTAGAAATCTGTGCAATAGTAGGACTGGTAGTAGCTTTTATCTTAGCAGTAGTTGTGTG +GGCTATAATAGGTATAGAATATAAGAAAATACTAAGGCAAAGAAAAATAGATAGGTTAAG +TGACAGAATAAGAGACAGAGCAGAAGAYAGTGGCAATGAAAGTGAGGGGGATACAGATGA +ACTCGCAGCACTTATTGAAATGGGGGGCTATGATCTTGGGAACGTTAATGATCTGTAGTG +CTGCAGATAAATTGTGGGTTACTGTCTATTATGGGGTGCCTGTGTGGAAGGATGCAGAGA +CCACCCTATTTTGTGCATCAGATGCTAAAGCATATAAGACAGAAAAGCATAATGTCTGGG +CTACGCATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATACATTTGGAAAATGTGA +CAGAAGAGTTTAACATGTGGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATCA +GTTTATGGGACCAAAGTTTAAAGCCATGTGTAAAGTTAACCCCTCTTTGTGTGACTTTAA +ATTGTAGCAACAACGTTACCATTACCAACAGCACTAATGAAGTAAGAAACTGCTCTTTCA +ATGTGACCACAGCAGTACAGGATAAGAAAGATAAAGTATGGTCACTTTTTTATAATCTTG +ATGTAGTACAAATAGGTAGTGAGAATAGTAGTCAATATAGATTAATAAATTGTAATACCT +CAGTCATTACACAGGCATGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTG +CTCCAGCTGGTTTTGCGATTCTAAAGTGTAATGATGAGAAGTTCACTGGAACAGGGTCAT +GCGATAATGTCAGCACAGTACAATGCACACATGGGATCAGGCCAGTAGTGTCAACTCAAC +TGCTGTTAAATGGCAGTCTAGCAGGAGACAAGGTAATGATTAGAACTGAAAATATCACAA +ACAATGCCAAAAACATAATAGTACAATTGAACAAGTCTGTAAAAATTAATTGTACCAGAC +CTGCCAACAATACAAGAAAAAGTATAACTATGGGACCAGGAAAGGCCTTCTTTGCAACAG +GTGGCATAATAGGGGATATAAGACAAGCACATTGTAATGTCAGTAAAACAGACTGGACTG +CAGCTTTGCACGATGTAAGCCAACAATTAAGAACATTCTTTGAGAATGAAACAACAATAA +TCTTTGCTAGCGCCTCAGGAGGGGATCTAGAAATTACAACACATAGTTTTAATTGTGGAG +GAGAATTTTTCTATTGTAACACATCAAGCCTGTTTAATAGCACCTTCAGGTCAAATAGCA +GCATAAGGGACATGGAGTTAAACGACACTATAACTCTCCAATGCAGAATAAAGCAAATTA +TAAACATGTGGCAGAGAACAGGACAAGCAATGTATGCCCCTCCCATCCCAGGAATAATAA +GGTGTGAATCCAACATTACAGGATTAATATTAACAAGAGATGGTGGGGGAGGGAATAGGA +GTAATGAAACCTTCAGACCTGTAGGAGGAGATATGAGGGATAATTGGAGAAGTGAATTAT +ATAAATATAAAGTAGTAAAAATTGAACCACTAGGAGTAGCACCCACCAGGGCGAAGAGAA +GAGTGGTGGGGAGAGAAAAAAGAGCAGTCGGACTGGGAGCTGTTTTCATTGGGTTCTTAG +GAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGGCAAT +TATTGTCTGGTATAGTGCAACAGCAAAATACTTTGCTGAGGGCTATAGAGGCTCAACAGC +ATTTGTTGAAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGACTCCTGGCTGTGG +AAAGATACCTAAAGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCATCT +GCACCACTAATGTGCCCTGGAACTCTAGTTGGAGTAATAAATCATATAGTGAGATATGGG +ATAATATGACTTGGATACAATGGGATAAAGAAATTAACAATTACACACAGATAATATATG +AGCTAATAGAAAAATCGCAGAACCAGCAGGAAATAAATGAACAAGACTTATTGGCATTGG +ACAAATGGACAAATTTGTGGAATTGGTTTGACATATCAAATTGGCTGTGGTATATAAAGA +TATTCATAATGATAGTAGGAGGCTTAATAGGGTTAAGAATAGTTTTTGCAGTGCTTTCTG +TAATAAGTAGAGTTAGGCAGGGATACTCACCTTTGTCTTTTCAGACCCATACCCCAAACC +CAACGGGACTCGACAGGCCCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGGCA +GATCCACGCGATTAGTGAACGGATTCTTAGCACTTGTCTGGGACGATCTTCGGAGCCTGT +GCCTCTTCAGCTACCACCAATTGAGGAACTTCATCTTGATTGTCGCGAGGACTGTGGAAC +TTCTGGGACGCAGCAGTCTCAAGGGGTTGAGACTGGGGTGGGAAGGCCTCAAGTATTGGG +GGAATCTCTTGATATATTGGGGTCGGGAGCTAAAAACTAGTGCTATTCATTTGTATGATA +CCATAGCAATAGTAGTAGCTGGCTGGACAGATAGGGTTATAGAACTAGGACAAAGGTTTG +GTAGAGCTATTTTACACATACCTAGAAGAATCAGACAGGGCTTAGAAAGGGCTTTGCTAT +AACATGGGGGGCAAGTGGTCAAAAAGTAGCCTAGTAGGGTGGCCTAAGATCAGGGAAAGA +ATAAGACAAACTCCCCCAACAGAAGGAGGAGATGCCCGGCTGCTGGAAGAGCAAGAAGAA +GAGGAGGTAGGCTTTCCAGTCAGGCCACAGGTACCTCTAAGACCAATGACTTGGAAGGCA +GCTATGGATATCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTAATTTACTCC +AAGAAGAGACAAGAAATCCTTGATCTGTGGGTATACAACACACAAGGTTTCTTCCCTGAC +TGGCAGAATTACACACCAGGGCCAGGGATCAGGTACCCACTAACATTTGGATGGTGCTTC +AAGCTAGTACCAGTTGATCCAGCAGAAGTGGAGAAGGCTAATGAGGGAGAGAATAACAGC +CTGTTACACCCTATATGCCAACATGGAATGGATGATGAGGAGAGAGAAACATTAATATGG +AAGTTTGACAGCAGCTTGGCATTTGTACACAAAGCCCAAGAGCTGCATCCGGAGTTCTAC +AAAGACTGCTGA +>A1.GB.2013.0.15171_1_44.3.MF109677 MF109677 +ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATACATGGGAGAAAATTCGG +TTAAGGCCAGGGGGAAAGAAAAAGTATAGATTAAAGCATCTAGTATGGGCAAGCAGGGAG +CTGGAAAGATTTGCACTTAACGCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATA +ATGAACCAGTTACAATCAGCTCTCAAGACAGGAACAGAAGACCTTAAATCATTATTTAAT +ACAGTAGCAGTCATCTATTGTGTACATCAAAGGATAGATGTAAGAGATACCAAAGAAGCT +TTAGATAAAGTAGAGGAGATACAAAACAAAAGTGCGCAAAAGACACAACAGGCAGCAGCT +GACACAGGAAGCAGCAACCAGGCCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGG +CAAATGATACACCAGGCTGTGTCACCTAGGACTTTAAATGCATGGGTGAAAGTAATAGAA +GAGAGGGCTTTCAGCCCAGAAGTGATACCCATGTTCTCAGCATTATCAGAAGGGGCCACC +CCGAGTGACTTAAATATGATGCTGAACATAGTGGGAGGACACCAGGCAGCTATGCAAATG +TTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGTTACATCCAGTACATGCA +GGGCCTATTGCACCAGGCCAGGTGAGAGAACCAAGGGGAAGTGATATAGCAGGAACTACT +AGTACCCTTCAAGAACAAATAGCATGGATGACAGCCAACCCACCTATCCCAGTGGGAGAC +ATCTATAAAAGATGGATCATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCAGTT +AGCATTTTGGATATAAAACAAGGACCAAAAGAACCCTTCAGAGATTATGTAGATAGGTTC +TTTAAAACTCTTAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAATCC +CTGCTGATCCAAAATGCAAATCCAGATTGTAAGAGCATTTTAAAAGCATTAGGAGCAGGG +GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCA +AGGGTTTTGGCTGAGGCAATGAGCCAAGCCCAACATACAAACATAATGATGCAGAAAGGC +AATTTTAGGGGCCAGAAAAGGATTAAGTGTTTCAACTGTGGCAAAGAAGGACATCTAGCC +AGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAGTGTGGGAAGGAGGGACACCAA +ATGAAAGACTGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCAGCAAG +GGGAGGCCAGGAAATTTTCCACAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGCTC +TTTGGGATGAGGGAAGAGATAGCCCCCCCTCCGAAGCAGGAGCAGAACGACAGGGACAAC +ACCTTCAGTTTCCCTCAAATCACTCTTTGGCAACGACCTCTTGTCACAGTAAAAGTAGGA +GGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATA +AATTTGCCAGGAAAATGGAAGCCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTA +AGACAGTATGATCAGATACTTATAGAAATTTGTGGGAAAAAGGCTATAGGTACAGTATTA +GTAGGACCCACACCTGTCAACATAATTGGAAGAAATATGTTGACCCAGATTGGTTGTACT +CTAAATTTTCCAATTAGTAATGTTGAGACTGTACCAGTAAAACTAAAGCCAGGAATGGAT +GGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAGAAAATAAAAGCATTAACAGAAATT +TGTACAGAGATGGAAAAAGAGGGAAAAATCTCAAAAATTGGGCCTGAAAATCCATACAAT +ACTCCAATATTTGCTATAAAGAAAAAGGACAGCACTAAATGGAGAAAATTAGTAGATTTC +AGAGAACTCAATAAAAGAACTCAGGATTTTTGGGAAGTTCAATTAGGAATACCGCATCCA +GCGGGCTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGACGCATATTTTTCA +GTGCCTTTAGATGAAAGCTTTAGAAAGTATACTGCGTTCACCATACCTAGTACAAACAAT +GAGACACCAGGAATCAGGTATCAGTACAATGTGCTTCCCCAGGGCTGGAAAGGATCACCA +GCAATATTCCAGAGTAGCATGACAAAAATCTTACAGCCCTTTAGGTCAAAAAATCCAGAA +ATAATTATCTATCAATACATGGATGACTTATATGTAGGATCTGATTTAGAAATAGGGCAG +CATAGAGCAAAAGTAGAGGAGTTGAGAGCTCATCTGTTGAGCTGGGGGTTAACTACACCA +GACAAAAAGCATCAGAAAGAACCCCCATTTCTTTGGATGGGATATGAACTCCATCCTGAC +AAGTGGACAGTCCAACCAATACAGTTGCCAGAAAAGGAAAGTTGGACTGTCAATGATATA +CAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAAATTTATACAGGAATTAAAGTAAAA +CAATTGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGATATAGTACCATTAACTGAA +GAAGCAGAATTAGAATTGGCAGAGAACAGGGAGATTCTAAAAAACCCTGTGCATGGGGTA +TATTATGACCCAGCAAAAGACTTAATAGCAGAGATACAGAAACAAGGACAAGACCAATGG +ACATATCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCAAGACAG +AAGTCTACTCACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAAGTGGTTACA +GAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAAACTACCCATACAAAAAGAAACA +TGGGAAACATGGTGGAGGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTC +AATACCCCTCCCCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGCAGGAGCA +GAGACTTTCTATGTAGATGGGGCAGCCAATAGGGAAACTAAGATAGGGAAAGCAGGGTAT +GTCACTGATAAAGGAAGACAAAAGGTTGTTTCCCTAAATGAGACAACAAATCAAAAGACT +GAATTACATGCAATCTATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAACATAGTAACA +GACTCACAGTATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGAATCAGAGATA +GTCAATCAAATAATAGAGAAGTTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTACCA +GCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTGGTCAGTTCTGGAATCAGA +AGGGTGCTATTTTTAGATGGGATAGATAAAGCTCAAGAAGATCATGAAAAATATCACAGC +AATTGGAGAACAATGGCTAGTGATTTTAATCTGCCACCTGTAATAGCAAAGGAAATAGTA +GCCAGCTGTGATAAATGCCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGCAGT +CCAGGGATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTAATTCTGGTAGCAGTC +CATGTAGCCAGTGGCTATATAGAAGCAGAAGTCATCCCAGCAGAAACAGGACAGGAGACA +GCATACTTTTTGCTAAAACTAGCAGGAAGATGGCCAGTAAAAATGGTACACACAGACAAT +GGCACCAATTTCACCAGCGCTGCCTTTAAAGCAGCCTGTTGGTGGGCAAATGTTAAACAG +GAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTGGTAGAATCTATGAATAAAGAA +TTAAAGAAAATCATAGGGCAAGTAAGAGAGCAAGCAGAACACCTTAAGACAGCAGTACAA +ATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGG +GAAAGAATAATAGACATAATAGCAACAGACATACAAACTAGAGAATTACAAAAACAAATT +ACAAATATTCAAAAATTTCGGGTCTATTACAGGGACAGCAGAGATCCAATTTGGAAAGGA +CCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTGGTCATACAGGATAATAGTGATATA +AAGGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGT +GATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACA +TCATATGTATGTCTCAAGAAAAGCTAGCAAGTGGTTTTATAGACATCACTATGAAAGCAG +GCATCCAAAAGTGAGTTCAGAAGTACACATCCCACTAGGGGACTATGTTAGTAGTAAGAA +CATATTGGGGACTGCATACAGGAGAAAAAGACTGGCACTTGGGTCATGGGGTCTCCATAG +AATGGAGGCTCAAACGATATAGCACACAAATAGACCCTGACCTGGCGGACCAACTAATTC +ATCTGCATTATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAGGCCATATTAGGACAAG +TAGTTAGCCCTAGTTGTGAATATCAAACAGGACACAGCAAGGTAGGATCTCTACAATATT +TAGCACTAAAAGCACTAGTAACACCAATAAGGGTAAAGCCACCTCTGCCTAGTGTTAGGA +AATTAGCAGAGGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCTCAAAGGGAACCATA +CAATGAATGGATGTTAGATCTGTTAGAAGATCTGAAGAATGAAGCCGTTAGACATTTCCC +TAGGCCATGGCTTCATGGATTAGGACAACACATCTACAACACCTATGGGGATACTTGGGA +AGGGGTTGAAGCTATAGTAAGAATTCTGCAACAACTACTGTTTGTTCATTTCAGAATCGG +GTGCCAACATAGCAGAATAGGCATTATTCAAGGGAGAAGAGGCAGGAATGGAGCCGGTAG +ATCCTAACCTAGAGCCCTGGAACCATCCGGGAAGTCAGCCTACAACTCCTTGTAGCAAGT +GTTACTGTAAAGTGTGTTGCTATCATTGCGTAGTTTGCTTTCAGAAAAAAGGCTTAGGCA +TCTCCTATGGCAGGAAGAAGCGGAACCAGCGACGAGGACCTCATCAAAACAGTGAGACTC +ATCAAAATCTTGTACCAAAGCAGTAAGAGTAAATGTAATGNCTTTGGAAATCTATGCAAT +AGCAGGACTAGTAGTGGCACTAATCATAGCAATAGTTGTGTGGACTATAGTAGGTATAGA +ATATAAGAGATTGCTAAAGCAAAGGAAAATAGATAGGTTAATTGAGAGAATAAGGGAAAG +AGCAGAAGACAGTGGCAATGAGAGTGAGGGGGATACAGAGGAATTGGCAGCACTTGTCGA +GATGGGGACTATAATCTTGGGTATGATAATGATCTGTAGTGCTACAAACTTGTGGGTTAC +TGTCTACTATGGGGTACCTGTGTGGAAAGATGCAGAGACCACTCTATTTTGTGCATCAGA +TGCTAAAGCACATAAGGCAGAAGTGCATAATGTATGGGCTACACATGCCTGTGTGCCCAC +AGACCCCAACCCACAAGAAATAAAGTTGGAAAATGTGACAGAAGAGTTTAACGTGTGGAA +AAACAGCATGGTAGAGCAGATGCAGACAGATATAATCAGTCTATGGGACGAAAGCCTAAA +GCCATGTGTAAAGTTAACCCCTCTCTGCGTCACTTTACAGTGTACCAATAACGTTACCAA +GAACAGCACGGGAGAAATAAAAAACTGCTCTTTCAATATGACCACAGAACTAAGGGATAA +GAAACATAAAACATATGCACTTTTTTATAGACTTGATATAGTACCCATNTATAGATTAAT +AAATTGTAATACCTCAGCCATTACACAAGCTTGTCCAAAGGTAACCTTTGAGCCAATTCC +TATACATTATTGTGCCCCAGCTGGTTTTGCAATCCTAAAGTGCAATGATGAGAAATTCAA +TGGAACAGGGCTATGCAGGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGT +AGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAAAAAACGGGGTAAAACTTAGATC +TGAAAATATCACAAACAATGCCAAAACCATAATAGTACAACTTGACAAACCTGTAAGAAT +TAATTGTACCAGACCTAACAACAATACAAGAAAAAGTATCCATATAGGGCCAGGACAAGC +ATTCTATGGAGCAGGTGATATAATAGGGGATATAAGGCAAGCACATTGTAATGTCAGTAG +TTCAGATTGGAATGAAACTCTACAAGAGGTAGTCAAACAATTAAGAGAACACTGGAACAC +AACAATAATCTTTAATAGCTCAGCAGGAGGGGATTTAGAAATTACAACACATAGTTTTAA +TTGTGGAGGAGAATTTTTCTATTGTAATACATCAAACCTGTTTAATATAACTCTTCAATG +CAGAATAAAGCAAATTATAAATATGTGGCAGAGAGCAGGACAGGCAATGTATGCCCCTCC +CATCCCAGGAATAATAAGGTGTGATTCAAACATTACAGGAATATTATTAACAAGAGATGG +TGGNGAAACCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATA +TAAGTATAAAGTAGTAAAAATTGAACCACTAGGAATAGCACCCACCAGGGCACGGAGAAG +AGTGGTGGAGAGAGAAAAAAGAGCAGTTGGACTGGGAGCTGTATTCATTGGGTTCTTAGG +AGCAGCAGGAAGCACTATGGGCGCGGCGTCAATGACGCTGACGGTACAGGCCAGACTATT +ATTGTCTGGCATAGTGCAACAGCAAAGTAATTTGCTGAGGGCTATAGAGGCTCAACAGCA +TCTGTTGAAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGA +GAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCATCTG +CACCACTAATGTGCCCTGGAACTCTAGTTGGAGTAATAAAAATCTCAGTGGGATATGGGA +TAACATGACCTGGCTGCAATGGGACAAAGAAATTAGCAATTACACAGAAGAAATATATAA +ACTGATTGAAGAGGCGCAAAACCAGCAGGAAAAGAATGAACAAGAATTATTGGCATTGGA +CAAGTGGGCAAATCTGTGGAGTTGGTTTGACATATCAAACTGGCTGTGGTATATAAGAAT +ATTTATAATGATAGTAGGAGGCTTAATAGGACTAAGAATAGTTTTTGCTGTGCTTTCTGT +AATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGACCCATACCCCGAACCC +ACGGGGTCTCGACAGGCCCGAAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGACAG +ATCGATTCGATTAGTCAGCGGCTTCTTAGCGATTGCCTGGGACGACCTGCGGAGCCTGTG +CCTCTTCAGCTACCACCGATTGAGAGACTTCACCTTGATTGCAGCGAGGACTGTGGAGGG +GTGGAAGGGACTCAAGTATCTGGGGAATCTCCTACTGTATTGGGGTCGGGAACTAAGAAT +TAGTGCTATTAGTTTGTTTGATACCATAGCAATAGTAATAGCTGGCTGGACAGACAGGGT +TATAGAAATAGGACAAAGAATTGGTAGAGCTTTTCTCAACATACCTAGAAGAATCAGACA +GGGCACCGAAAGGGCTTTACTATAAAATGGGTAACAAGTGGTCAAAGGGATGGCCTCAGG +TTAGGGAAAGAATGAGACGCAGCAGCAAAAGGAGTAGGAGCAGTATCACAAGATCTAGAA +AAACATGGAGCAATCACCAGCAGCAATATAAATCACCCTAGTTGTGTCTGGCTGGAAGCA +CAAAAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCACAAGTACCTTTAAGACCAATGACT +TACAAAGGAGCTTTTGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTA +ATTTACTCCAGGCAAAGAGCTGACATCCTTGATCTGTGGGTCTACAACACACAAGGCTAC +TTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATTAGATACCCACTAACATTTGGA +TGGTGTTTCAAGCTAGTACCAGTTGATCCAGATGAAGTAGAGAAGGCTAATGAGGGAGAG +AACAATAGCCTATTACACCCTATGTGCCAACATGGAATGGATGATGAAGAGAAAGAAACA +TTAAAGTGGGTGTTTGACAGCCGCCTGGCATTAAAACACAGAGCCCTAGAGCTGCATCCG +GAGTTCTAG +>A1.TZ.2005.0.CO3083V4.KX907364 KX907364 +GCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGG +CCAGGGGGAAAGAAAAAATATAAAATGAAACATCTAGTATGGGCAAGCAGGGAGCTGGAA +AGATTCGCACTTAACCCTAGCCTTTTAGAAACGACAGAAGGGTGTCAACAAATAATGGAA +CAGTTACATTCAGCTCTCAACACAGGAACAGAAGAACTTAAATCATTGTTTAATACAGTA +GCAACCCTCTATTGTGTACATCAAAAGATAGATGTAAGAGACACCAAAGAAGCTCTAGAT +AAAATAGAGGAAATAAAAAATAAGAGCAAGCAAAAGACACAACAAGCAGCAGCTGACACA +GGAAACAGCAGCAAGGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATG +ATACACCAGAACTTGTCACCTAGGACTTTAAATGCATGGGTGAAAGTAATAGAAGAAAAG +GCTTTCAGCCCAGAAGTAGTACCCATGTTTTCAGCATTATCAGAAGGAGCCACTCCACAA +GATTTAAATATGATGTTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAATGTTAAAA +GATACCATCAATGAGGAAGCTGCAGAATGGGACAGGCTACATCCAACACATGCAGGGCCT +ATCCCACCAGGCCAGATAAGAGAACCAAGGGGAAGTGATATAGCAGGAACTACTAGTACC +CCTCAAGAACAGCTACAATGGATGACAGGCAACCCACCTATCCCAGTGGGAGACATCTAT +AAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTGTTAGCATT +TTGGATATAAGACAAGGGCCAAAAGAACCCTTCAGAGATTATGTAGATAGGTTCTTTAAA +GCTCTCAGAGCTGAGCAAGCTTCACAAGATGTAAAAAATTGGATGACAGACACATTACTG +GTCCAAAATGCGAATCCAGATTGTAAGTCCATTTTAAAAGCATTAGGAGCAGGGGCTACA +TTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAGGCAAGGGTT +TTAGCTGAGGCAATGAGTCAAGCACAACATGCAAACATAATGATGCAGAGAGGCAATATT +AGGGGTCAAAGAAGGATTAAGTGCTTTAACTGTGGCAAAGAAGGACACCTAGCCAGAAAT +TGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGGAAAGAGGGACACCAAATGAAA +GACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGG +CCAGGGAATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGACCTCCTYGGG +ATGGGGGAAGAGATAACTTCCCCTCAGAAGGAGCAGAAAGACAGGGAACTGGGCCCACCC +TTAGTTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTTACAGTAAAAATAGGAGGAC +AGATAAAAGAAGCTCTGTTAGATACAGGAGCAGATGATACAGTATTAGAAGATATAAATT +TGCCAGGAAAATGGAAACCAAGAATGATAGGGGGAATTGGAGGGTTCATTAAGGTAAAAC +AGTATGATCAGATATCTATAGAAATTTGTGGGAAAAAGGCTATAGGTACAGTATTGGTAG +GACCCACACCTGTCAACATAATTGGAAGAAATATGTTGACCCAGATTGGTTGTACTTTAA +ATTTCCCAATTAGTCGTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGTC +CAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTA +CAGAGATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTC +CAATATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGGAAATTAGTAGATTTTAGAG +AGCTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCGCATCCAGCGG +GACTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTC +CTTTAGATGAAAGCTTTAGAAAGTACACTGCGTTCACCATACCCAGTACAAACAATGCAA +CACCTGGAGTCAGGTATCAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCGGCAA +TATTCCAGAGTAGCATGACAAAGATCTTAGAGCCCTTTAGATCAAAAAATCCAGACATAA +TCATCTATCAATACATGGATGACTTGTATGTAGGATCTGATTTAGAAATAGGGCAGCATA +GAACAAAAGTAGAAGAATTGAGGGCTCATCTATTGAGCTGGGGATTGACTACCCCAGACA +AAAAGCATCAGAAAGAACCACCATTCCTTTGGATGGGATATGAACTTCATCCTGACAAGT +GGACAGTCCAGCCTATAGAGCTGCCAAAAAAGGAAAGCTGGACTGTCAATGATATACAGA +AATTAGTGGGAAAACTAAATTGGGCAAGTCAAATTTATCCAGGGATTAAAGTAAAGCAAC +TGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGATATAGTAACAATGACTGAGGAAG +CAGAATTAGAATTGGCAGAAAACAGGGAGATTCTAAAAGACCCTGTGCATGGAGTATACT +ATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACAT +ATCAAATTTATCAAGAACCATTTAAAATTCTAAAAACAGGAAAATATGCCAGAAAGAGGT +CTGCTCACACTAATGATGTAAAACAATTAACAGATGTGGTGCAAAAGGTGGTCATGGAAA +GCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGG +AAACATGGTGGGTGGACTATTGGCAGGCTACCTGTATTCCTGAATGGGAGTTTGTCAATA +CCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGAAGGAGCAGAGA +CTTTCTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTCA +CAGACAAAGGAAGACAAAAGGTTGTTTCCCTGACTGAGACAACAAATCAAAAGACTGAGC +TACATGCAATCCATCTAGCTTTGCAGGATTCAGGATCAGAAGTAAATATAGTAACAGATT +CACAGTATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGACTCAGAGTTAGTCA +ACCAAATAATAGAGAAGCTAATAGGAAAGGACAAAGTCTACCTGGCATGGGTACCAGCAC +ACAAAGGAATTGGAGGGAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGG +TGCTGTTTTTGGATGGGATAGATAAAGCTCAAGAAGACCATGAGAAATATCACAGCAACT +GGAGAGCAATGGCTAGTGATTTTAATCTGCCACCTATAGTAGCAAAGGAAATAGTAGCCA +GCTGTGATAAATGTCAACAAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAG +GGATGTGGCAATTAGATTGCACACATTTAGAAGGAAAAGTAATTCTGGTAGCAGTCCATG +TAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACAGGAT +ACTTTCTGCTAAAATTAGCGGGAAGATGGCCAGTAAAAGTAGTACACACAGATAATGGCA +GCAATTTCACCAGCGCTGCGTTTAAAGCAGCCTGTTGGTGGGCAGGTATCCAACAGGAAT +TTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGGAATTAA +AGAAAATCATAGGACAAGTAAGAGAGCAAGCTGAGCACCTTAAAACAGCAGTACAAATGG +CAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAA +GAATAATAGACATGATAGCAACAGACATACAAACTAAAGAATTACAAAAAAATATTACAA +AAATTCAAACTTTTCAGGTTTATTACAGAGACAGCAGAGATCCGATTTGGAAAGGACCAG +CAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGATATAAAGG +TAGTACCAAGAAGAAAAGCAAAAATCATTAGGAATTATGGAAAACAGATGGCAGGTGATG +ATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCAT +ATGCATGTCTCAAAGAAAGCAAAAAATTGGTTTTATAGACATCACTTTGAAAGCAGGCAT +CCAAAAGTAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAATAGTTAGGACA +TATTGGGGTCTGCATACAGGAGAAAAAGATTGGCAATTGGGTCATGGGGTCTCCATAGAA +TGGAGGCAAAAAAGATATAGCACACAAATAGATCCTGATCTGGCAGACCAACTAATTCAT +CTGCACTATTTTCAATGTTTTTCAGACTCTGCCATAAGGAAAGCAATATTAGGACAAGTA +GTTAGCCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATATTTG +GCACTGAAAGCATTAATAACACCAAAAAGAAGAAAGCCACCTTTGCCTAGTGTTAGGAAA +TTAACAGAGGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGCCATACA +ATGAATGGGCATTAGAACTGTTAGAAGAGCTTAAGCATGAAGCTGTTAGGCACTTTCCTA +GGCCATGGTTACATGGATTAGGGCAACATATCTATAATACCTATGGGGATACTTGGGAAG +GAGTTGAAGCTATAATAAGAATGTTGCAACAATTACTGTTTGTTCATTTCAGAATTGGGT +GCCAACATAGCAGAATAGGTATTATGCGGGGGAGAAGAGTCAGGAATGGATCCAGTAGAT +CCTAACCTAGAGCCTTGGAACCACCCGGGAAGTCAGCCTGCAACTGCTTGTAGCCAGTGT +TATTGTAAAGTGTGTTGCTATCATTGCCAGTGGTGCTTTCTGCGCAAAGGCTTAGGCATC +TCCTATGGCAGGAAGAAGCGGAGACAGCGACGAGGACCTCCTCAGAGCAATAAGGATCAT +CAAAATCCTATACCAAAGCAGTAAGTATTAGCAGTTAGTATATGTAATGACTCCTTTGGA +AATCAGTGCAGTAGCAGGACTGATAGTGGCGCTAATTCTAGCAATAGTAGTGTGGACTAT +AGTAGGGATAGAATATAAGAGATTGCTAAAGCAAAGAAAAATAGATAGGTTAATTAAGAG +AATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGACGGGGACACAGATGACCTCGC +AACACTTATCAATATGGGGGACTATGATCTTGGGAATGATAATAATCTGTAATGCTACAA +CTACAGACAAGATGTGGGTTACGGTCTACTATGGGGTACCTGTGTGGAAAGATGCAGAGA +CCACCCTATTTTGTGCATCAGATGCAAAAGCATATGATCCAGAAATGCATAATGTCTGGG +CTACACATGCCTGTGTTCCTACAGACCCTAACCCACAAGAAATAAATTTGGAAAATGTGA +CAGAACAGTTTAACATGTGGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATCA +GTCTATGGGACCAAAGCCTAAAACCATGTGTAAAGTTAACCCCTCTCTGTGTTACTCTAG +AATGTACCAATGCCAATATCACCAATAATATCACCAATGCCAATGTCACCAATGACATGC +AAGAAGTAAAAAACTGCTCTTTCAATATAACCACAGAACTAAGGGATAAAAGAAAGAAAA +TATATTCACTTTTTTATAGACTTGATATAGTACAAATAAATGAAGGGGAGGATACTAATA +ATAGTAGTAATAGTAGTCAGTATAGATTAATAAACTGTAATACCTCAGCCATCACACAAG +CTTGTCCAAAGGTAACCTTTCAGCCAATCCCCATACATTATTGTGCCCCAGCTGGTTTTG +CGATTCTAAAGTGTAATGATGAGGATTTCAATGGGACAGGACTATGTAAGAATGTCAGCA +CAGTACAATGCACACATGGAATCAAGCCAGTAGTATCAACGCAACTGCTGTTAAATGGAA +GTCTAGCAGAAGGAAATGTAACAATTAGATCTGAAAATTTTACAAACAATGCCAAAAACA +TACTAGTACAATTTAAAAAGCCTGTACAAATTAATTGTACTAGACCTAGCAACAATACAA +GGACAAGTGTACGTATAGGACCAGGACAATCATTCTATGCAACAGGTGCCATAATAGGGG +ATATAAGACAAGCACATTGCAATGTCAGTGCAGCAGAATGGAATACAACTTTGAAAAGTG +TGGTTGACCAATTAAGAAAACACTTTGGAGAAAACAAAACAATAATYTTTACTAACCACT +CAGGAGGGGATCTAGAAATTACAACACATAGTTTTAATTGTGGAGGAGAATTTTTCTATT +GTAACACATCAGCCCTGTTCAATAGCAGTTGGAGTAGTGTAAATGACAGCGGGAACATTA +GCCCAGAGCCAAACAAAAATATAACCCTCCGATGCAGAATAAAGCAAATTATAAATATGT +GGCAGAGAGTAGGACAAGCAATATATGCCCCTCCCATCCAAGGAGTAATAAGGTGTGACT +CAAACATTACGGGATTAATATTAACAAGCGATTATGGAGGGACTAACAGTACACATGAAA +TCTTCAGACCTGCAGGAGGAAATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATA +AAGTAGTACAAATTGAACCAATAGGAGTAGCACCCATCAGGGCAAAGAGAAGAGTGGTGG +AGAGAGAAAAAAGAGCAGTCGGACTGGGAGCTGTCTTCCTTGGTTTCTTAGGAGCAGCAG +GAAGCACTATGGGCGCGGCGTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTG +GTATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCTCAACAGCATCTGTTGA +AACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAGAGATACC +TAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAGCTCATCTGCACCACTA +ATGTGCCCTGGAACTCTAGTTGGAATAATAAATCCTTCAATGAAATATGGGACAACATGA +CCTGGCTGCAATGGGATAAAGAAATTAGCAATTACACACAGATAATATATGACCTAATTG +AAGAATCGCAGAACCAGCAGGAAAAGAATGAACAAGATTTATTGGCATTGGACAAGTGGG +CAAATCTGTGGAATTGGTTTGACATATCAAACTGGTTGTGGTATATAAGAATATTTATAA +TAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTGTTGCAGTGTTTTCTATAATAAATA +GAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGATCCATACCCCAAACCCAGGGGGTC +CCGACAGGCCCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGGCAGATCGATTC +GATTAGTGAGCGGATTCTTAGCACTTGCGTGGGACGATCTCAGGAACCTGTGCCTCTTCA +GCTACCACCGATTGAGAGACTGCATCTTGATTGCCGCGAGGACTGTGGAACTTCTGGGAC +GCAGCAGTCTCCAGGGGTTGAGACTGGGGTGGGAAGGCCTCAAGTACCTGGGGAACCTCC +TGGAATATTGGGTTCGGGAGCTAAAAATTAGTGCTATTAATTTGCTTGATACCATAGCAA +TAGCAATAGCTAACTGGACAGATAGGGGTATAGAAATAGGACAAAGACTTTGTAGAGCGC +TTTTAAACATACCTAGAAGAATCAGACAGGGCTTTGAAAGGGCTTTGCTATAACATGGGG +GGCAAGTGGTCAAAAAGTAGCATAGTGGGCTGGCCTGAGGTTAGGGAAAGAATAAGACAA +ACTCCAGCAGCAGCAAGAGGAGTGGGAGCAGTATCTCAAGATTTAGATAAACATGGAGCA +ATCACAAGCAGCAATATAAATCACCCTAGTAACACCTGGCTGGAAGCGCAAGAGGAAGGG +GACGAAGTAGGCTTTCCAGTCAGGCCACAGGTCCCTACAAGACCAATGACTTACAAGGCA +GCTGTGGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTAATTCACTCC +AGACAGAGACAAGATATCCTTGATCTGTGGGTATACAACACACAAGGCTTCTTCCCTGAT +TGGCAGAACTACACTCCAGGGCCAGGGATTAGGTATCCACTAACATTTGGATGGTGCTTC +AAGCTAGTACCAGTTGATCCAGGAGAAGTAGAGAAGGCTACTGAGGGAGAGAACACCAGC +CTATTACACCCTATAAGTCAACATGGAATGGATGATGATGAGAAAGAAACATTAATGTGG +AAGTTTGACAGCAGGCTGGCCTTTAAACACACAGCCCGTGAGCTGCATCCGGAGTTCTAC +AAAGACTGCTGACACAGAAACTGCTGATGGGGACTTTCCGCTGGGGACTTTCCAGGGGAG +GTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAA +>A6.RU.2016.0.RU_ERS_1091_2016.MT369972 MT369972 +TGCTGAGTGCACACAGCAAGAGGCGAGGCGGCGGCGACTGGTGAGTACGCCTAAGATTTT +TGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCGGTCTTAAGCGGGGGA +AAATTAGATGCATGGGAAAAAATTCGGTTACGGCCAGGGGGAAAGAAACAATATAGAATA +AAACACCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCGCTTAACCCTAGCCTTTTA +GAAACATCAGAAGGATGTCAACAAATACTGGAGCAGTTACAATCAACGCTCAAGACAGGA +TCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCAAAGG +ATAGAAATAAAAGACACCAAGGAAGCTTTAGATAAAATAGAGGAAATACAAAATAAGAAC +AAGCAAAAGACTCAACAGGCAGCAACTGGCACAGGAAGCAACAGCAAGGTCAGTCAAAAC +TACCCCATAGTGCAAAATGCACAAGGGCAAATGACACACCAGTCCATGTCACCTAGGACT +TTGAATGCATGGGTGAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATG +TTTTCAGCATTATCAGAGGGAGCCACCCCACAAGATTTAAACATGATGTTGAACATAGTG +GGGGGACACCAGGCAGCTATGCAAATGTTAAAAGATACCATCAATGAGGAAGCTGCTGAA +TGGGATAGGATACATCCAGCACARGCAGGGCCTTTTCCACCAGGGCAGATGAGAGAACCA +AGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACA +AGCACCCCACCTATTCCAGTGGGAGAAATCTATAAAAGATGGATAATCCTAGGAYTAAAT +AAAATAGTACGAATGTATAGCCCTGTTAGCATTCTAGACATAAGACAAGGGCCAAAAGAA +CCCTTCAGAGACTATGTAGATAGATTCTTTAAAACTCTTAGAGCTGAGCAAGCTACACAG +GAGGTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCAAACCCAGATTGTAAA +AGTATTTTAAGAGCATTAGGATCAGGGGCTACATTAGAAGAAATGATGACAGCATGCCAG +GGAGTGGGAGGACCCGGCCACAAAGCAAGGGTTTTGGCCGAGGCAATGAGTCAAGTACAA +AATGCAAACATAATGATGCAGAAAAGTAATYKTAGGGGCCCAAAAAGAATTAAGTGTTTC +AACTGTGGCAAAGAAGGACACTTAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGT +TGGAAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTT +TTAGGGAGGATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTCCCTCAGAGCAGACCA +GAGCCATCAGCCCCACCAGCAGAGAACTTTGGGATAAGGGAAGAGATAACCCCCTCCCTG +AAACAGGGGCAGACAGACAGGGACCAACATCCTCCTTCAATTTCCCTCAAATCACTCTTT +GGCAACGACCCCTTGTCACAGTAAAAATAGGAGGACAGATAAAAGAAGCTCTATTAGATA +CAGGAGCAGATGATACGGTATTGGAAGACATAAATTTACCAGGAAAATGGAAACCAAAAA +TAATAGGGGGAATTGGAGGTTTTATCAAGGTAAGACAGTATGATCAGATACTCATAGAAA +TTTGTGGAAAAAAGGCTATAGGTACGGTATTAGTAGGGCCTACCCCTGTCAACATAATTG +GAAGAAATATGTTGACTCAGCTTGGTTGTACTTTAAATTTTCCAATAAGTCCTATTGAAA +CTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTAA +CAGAGGAAAAAATAAAAGCATTAATAGACATTTGTAAGGAGATGGAAAAGGAAGGAAAAA +TTTCAAAAGTTGGGCCTGAAAATCCATACAATACTCCAGTATTTGTTATAAAGAAAAAAG +ATAGCACTAAGTGGAGGAAATTAGTAGATTTCAGGGAGCTCAATAAAAGAACTCAGGACT +TTTGGGAAGTTCAATTAGGAATACCCCACCCAGCGGGCTTAAAAAAGAAAAAATCAGTAA +CAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGATAAAAACTTCAGAAAGT +ATACTGCATTCACTATACCAAGTACAAACAATGAGACACCAGGGATCAGATATCAGTACA +ATGTACTCCCACAGGGATGGAAAGGATCACCATCAATATTCCAGAGTAGCATGACAAAAA +TCTTAGAGCCATTTAGAGAAAGAAATCCAGAAATAGTTATCTATCAATACATGGATGACT +TGTATGTAGGCTCTGATTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGTTAAGAG +CTCATCTATTGAGCTGGGGATTTACTACACCAGACAAAAAGCATCAGAAAGAACCTCCAT +TTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAGCCTATAATACTAC +CAGATAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGG +CAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAATTGTGTAAACTCCTCAGGGGAGCCA +AAGCACTGACAGAKGTAGTGACACTGACTAAGGAAGCAGAATTAGAATTGGAGGAGAACA +GAGAGATTTTAAAAGAACCTGTGCATGGAGTATATTATGACCCATCAAAAGATTTAGTAG +CAGAAATACAGAAACAAGGACAAGGTCAATGGACATATCAAATTTATCAGGAGCCATTTA +AAAATCTAAAAACAGGTAAATATGCAAAAAGGGGGTCTGCTCATACGAATGACGTGAAAC +AATTAACAGCAGTRGTGCAAAAAGTGGCCACAGAAGGCATAATAATATGGGGAAAGATTC +CTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAGCATGGTGGATGGAGTATTGGC +AGGCTACCTGGATTCCTGAATGGGAGTGTATCAATACYCCTCCTCTAGTAAAACTATGGT +ACCAATTGGAAAAAGAACCCATAATGGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTA +ACAGGGAGACTAAGATAGGAAAAGCAGGGTATGTTACTGACAGAGGAAGACAAAAGATTG +TTCCTCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATCCATCTAGCTTTAC +AGGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATTATTC +AGGCACAACCAGACAGGAGTGAATCAGARATAGTCAATAAAATAATAGAGAAACTAATAG +GAAAAGAAAGAGTCTACCTGTCATGGGTACCAGCGCACAAGGGGATTGGAGGAAATGAAC +AAGTGGATAAATTAGTTAGTAATGGAATCMGGAGGGTGTTATTTTTAGAAGGRATAGATA +GGGCTCAAGAAGACCATGAAAAATATCACAGCAATTGGAAAGCAATGGCTAGTGATTTTA +ATCTGCCACCTGTAGTAGCAAAGGAAATAGTAGCTAGCTGTAATAAATGCCAATTAAAAG +GGGAAGCTATGCATGGACAGGTAGACTGTAGTCCGGGGATATGGCAATTAGATTGTACAC +ATCTAGAAGGAAAAGTAATCATAGTAGCAGTCCATGTAGCCAGTGGATATATAGAAGCAG +AAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTCCTGCTAAAATTAGCAGGAA +GATGGCCAGTAAAAGTAGTACACACAGATAATGGCCCAAATTTCACCAGCAGTGCAGTTA +AGGCTGCCTGTTGGTGGGCAAATATTCAACAGGAATTTGGGATTCCCTACAATCCCCAAA +GTCAAGGAGTAGTGGAGTCTATGAATAAGGAATTAAAGAAAATCATCGGGCAGGTAAGAG +AGCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAA +GAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAG +ACATACAAACTAAAGAATTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATT +ACAGAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAG +GGGCAGTGGTAATACAGGACAATAACGATATAAAAGTAGTACCAAGAAGAAAAGCAAAGA +TTATTAGAGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAATAGACAGGATG +AAGATTAGAACATGGCATAGTTTAGTAAAACATCATATATATGTCTCAAAGAAAGCTAGA +GAGTGGCTTTATAGACATCATTATGAAAGCAGACATCCAAGAGTAAGTTCAGAAGTACAC +ATCCCACTAGGGGATGCTAGGCTAGTAGTAAAAACATATTGGGGTCTGCATGCAGGAGAA +AGAGACTGGCACTTGGGTCATGGGGTCTCMATAGAATGGAGACAGGAAAGGTATAGCACA +CAAATAGAYCCTGACCTGGCGGACCAACTAATTCATCTGTATTATTTTGACTGTTTTTCA +GAATCTGCCATAAGGAAAGCCATAGTAGGACAAGTAGTTAGCCCTAGGTGTAACTATCCA +GCAGGACACAACCAGGTAGGACCTCTACAATATTTGGCACTGAAAGCAATAGTAACACAA +ACAAGAGAAAGGCCACCCTTGCCTAGTGTTAGGAAACTAACAGAGGATAGATGGAACAAG +CCCCAGAAGACCAGGGACCGCAGAGGGAACCATACAATGAATGGATGTTAGAACTGTTAG +AAGATCTTAAGCATGAAGCTGTCAGACATTTTCCAAGGCCRTGGCTCCATGGATTAGGAC +AACATATCTATAACACCTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGAACTT +TGCAACAACTATTGTTTGTTCATTTCAGAATTGGGTGCCAACATAGCAGAATAGGCATTG +TGCAAAGGAGAAGAGTAAGGAATGGATCCAGTAGATCCTAACCTAGAGCCCTGGAATCAT +CCGGGAAGTCAGCCTAAAACTGCTTGTAGCAATTGTTATTGTAAAATGTGTTGCTGGCAT +TGCCAAGTTTGCTTCTTAAAAAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGA +CGCAGACACGGAGYTCATCACAACAGTCAGGATCATCARAATCTTATACCAAAGCAGTGA +GTACTAAATAAATGTAATGAAACCTTTAGAAATCTGTGCAATAGCAGCATTAGTAGTAGS +ATCTGTCATAGCAATAGTTGTGTGGACTATAGTAGGTATAGAATATAGGAAATTGCTAAA +ACAAAGAAAAATAGAYAGGTTAATTGAGAGAATAAGAGAAAGAGCAGAAGACAGTGGCAA +TGAAAGCGAGGGGGATGAAGAGGAATTATCAACACTTATGGAGGTGGGGAACCATGCTCT +TTTGGATGATAATAATGTGTAAGGCTACAGGAAACTTGTGGGTCACGGTATACTATGGGG +TACCTGTGTGGAGAGATGCAGAGACCACCCTATTTTGTGCATCAGATGCTAAAGCGTATG +ATAAAGAAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAGCCCAC +AAGAAATAGATTTGGAAAATGTGACAGAAGATTTTAACATGTGGAAAAATAAYATGGTAG +AACAAATGCAGGCAGATATAATCAGTCTCTGGGACCAAAGCCTAAAGCCATGTGTAAAGT +TAACCCCTCTCTGTGTTACCTTAAATTGTACTAACCCCCAAAGCAATAACAGCAGTAGTG +GTAACAGCAAYAGCAGCGATAGTTTGTTTGAAGAAATGCAAAACTGCTCCTACAACACGA +CCACAGAACTAAGAGATAAAAAGAAAACTGTATATTCACTTTTTTATAAACTTGATATAG +TACCAACTGATAGTAATAGTARTGGGCAGTATAGACTAATAAATTGTAATACATCAGCCA +TGACACAGGCCTGTCCTAAGGTAACTTTTGAGCCAATTCCTATCCATTATTGTACCCCAG +CTGGTTTTGCGATTCTAAAATGCAAGGATATAAATTTTAATGGAACAGGGCCATGCAAGA +ATGTCAGCACAGTACAATGCACACATGGAATCAAACCAGTAGTATCAACTCAACTGCTGT +TAAATGGCAGTCTAGCAGAGAGAAATATAATGATTAGATCTAAAAATATCACAGACAATA +GCAAAATCATAATAGTACAGCTTACTAAGCCTGTAAAAATCACTTGCATCAGACCTGGCA +ACAATACAAGAACAAGTATACGTATAGGACCAGGGCAAACCTTCTATGCAACAGGTGATG +TAGTAGGGAACATAAGAAAAGCATATTGTAATGTCAGCRGAGTAAATTGGARTAACACTT +TACAAAACATAAGCGCACAATTAAGAACATATTTTAATAATAAAACAATAAACTTTAAGA +ACTCCTCAGGAGGGGATTTAGAAATTACAACACATAGTTTCAATTGTGGAGGAGAATTTT +TCTATTGCGATACAACAGACCTGTTCAATAGCACTTGGAATGTTAATGACACTRTCAATA +CCACAGAGGATGATAAAAATATAACTCTGCCATGCAGAATAAAGCAAATCATAAATATGT +GGCAGAGAGTAGGRCAAGCAATGTATGCCCCTCCTATCAGAGGAAGTATAAAGTGTGAAT +CAAACATTACAGGACTACTACTAACAAGAGATGGTGGAAATAAAACTGCKAGCAGCAGTG +AGACCTTCAGACCTATAGGAGGAGATATGAGGGAAAATTGGAGAAGTGAGCTATATAAAT +ATAAAGTAGTAAAAATTGAACCAATAGGAGTAGCACCTACCAGGGCAAAGAGAAGAGTGG +TGGAGAGAGAGAAAAGAGCAATTGGACTGGGAGCTGTCTTTCTTGGGTTCTTAGGAGCAG +CAGGAAGCACTATGGGCGCGGCGTCACTAACGCTGACGGTACAGGCCAGACAATTATTGT +CTGGCATAGTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCTCAGCAGCATCTGC +TGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGAT +ACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTGGAAGACTCATCTGCACCA +CTACTGTGCCCTGGAACTCTAGTTGGAGTAACAAATCTTATAGTGAGATATGGGAGAACA +TGACCTGGATGCAATGGGACAAGGAAGTTAATAATTACACAAGCATAATATATGATCTAA +TTGAACAATCGCAAAACCAGCAGGAAAARAATGAACAAGATTTATTGGCATTGGATAAAT +GGGCAAGTCTGTGGAATTGGTTTGATATATCAAAGTGGTTATGGTATATAAAAATATTTA +TAATAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTACTGTGCTTTCTATAATAA +ATAGAGCCAGGCAGGGATACTCACCCTTGTCATTGCAGACCCCTACCCTGCACCCAGAGG +GACCAGACAGGCCCGGAAGAATCAACGAAGAAGGTGGAAAGCAAGGCAGAGACAGATCAC +TGCGATTAGTGRGCGGATTCTTGGCACTTATCKGGGACGACCTGAGGAGTCTGTGCCTCT +TCAGTTACCACAGCTTGAGAGACTTCATCTCGATTGCAGCGAGGACGGTGGAACTTCTGG +GACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGAGCCTCAAGTATCTGGGGAATC +TCCTGAGATATTGGGGTCAGGAACTAAAGAGTAGTGCTATCAATCTAATAGATACCCTAG +CAATAGCAGTAGCTGGGGGGACAGATAGGGTTATAGMAATAGGACAAAGAKTTTGTAGAG +CCATTCGTAACATACCTAGGAGAATTAGACAGGGCGCAGAAAAGGCTTTGCAATAATATG +GGGGGTAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGGTTAGGGAAAGACTAAGG +CGAGCTCCTGCTCCAGCAGCAAGAGGAGTAGGACCAGTATCTCAAGATTTGGATARGTAT +GGAGCAGTCACAAGCAGTAATACAGCAGCTACGAATGCTGATTGTGCCTGGCTGGAGGCG +CAAGAGGACGAGGAGGTAGGCTTTCCAGTCAGGCCGCAGGTACCTTTGAGACCAATGACA +TATAAGGGAGCTCTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTA +ATTTACTCCAAGAAAAGACAAGAAATCCTTGATCTGTGGGTCTATCACACACAAGGCTAC +TTCCCTGATTGGCAGAATTATACCCCAGGGCCAGGGACTAGATTCCCACTAACCTTTGGG +TGGTGCTACAAGCTAGTGCCCGTTGACCCAGCGGACGTAGAAGAGGCCACAGAGGGAGAG +AATAACAGMCTATTACACCCTATATGCCAACATGGAATGGATGACGAAGAAAGAGAAGTG +TTAAGGTGGAAGTTTGACAGTCGCCTGGCTCTAAAACACAGAGCCCGAGAGCTGCATCCG +GAGTATTACAAAGACTGCTGACACAGACTGCTGACATGAAGTTGCTGACAGGGACTTTCT +GCGGGACTTTCCAGGGGGGGTGTGGTTTGGGTGGAGTTGGGGGAGTGGCTAACCCTCAGA +TGCTGCATATAAGCAGCTGCTTTGCACCTGTACTGGGTCTCTCTGGTTAGACCAGATCG +>A6.RU.2015.0.RU_ERS_551_2015.MT318157 MT318157 +TGCTGAAGTGCACACGGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCACATTTTTTG +ACTAGCAGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAA +ATTAGATGAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAA +ACACATAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCGCTTAACCCTGGCCTTTTAGA +AGCAGCGGAAGGATGTCAGCAGATAATGGAACAGTTACAACCATCTCTCAGGACAGGGTC +AGAAGAACTTAAGTCATTATTTAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGAT +AAAAGTAGCAGACACCAAGGAAGCTCTAGATAAAATAGAGGAAATACAAAATAAGAACAA +GCAAAAGACCCAACAGGCAGCAACTGGCACAGGAAGCAGCAGCAAGGTCAGTCAAAATTA +CCCCATAGTGCAGAATGCACAAGGGCAAATGACACACCAGTCCTTATCACCTAGGACTTT +GAATGCATGGGTGAAAGTAATAGAAGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTT +TACAGCATTGTCAGAGGGAGCCACCCCACAAGATTTAAACATGATGCTGAACATAGTGGG +GGGACACCAGGCAGCTATGCAAATGTTGAAAGATACCATCAATGAGGAAGCTGCTGAATG +GGATAGGGTACATCCAGTACAGGCAGGGCCTTTTCCAGCAGGGCAGATGAGAGAACCAAG +GGGAAGTGATATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAG +CAACCCACCTATCCCAGTGGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAA +GATAGTAAGAATGTATAGCCCTGTTAGCATTTTAGACATAAGACAAGGGCCAAAAGAACC +CTTCAGAGACTATGTAGATAGGTTCTTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGA +TGTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCAAATCCAGATTGTAAAAC +CATTTTAAAAGCATTAGGATCAGGGGCTACCTTAGAAGAAATGATGACAGCATGCCAGGG +AGTGGGAGGACCCGGCCATAAAGCAAGGGTTTTGGCCGAGGCAATGAGTCAAGTACAAAA +TGTAAACATAATGATGCAGAAAAGTAATTTTAGGGGCCCAAAAAGAATTAAGTGTTTCAA +CTGTGGCAAAGAAGGACATCTAGCCAGAAATTGCAGGGCCCCTAGGATAAGGAAAAAGGG +CTGTTGGAAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAGAGACAGGCTAA +TTTTTTAGGGAGGATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTCCCTCAGAGCAG +ACCAGAACCATCAGCCCCACCAGCAGAAAACTTTGGGATGGGGGAAAAGATAACCCCCTC +CCTGAAACAGGAACAGGAAGGCAGGGAACAGCATCCTCCTTCAATTTCCCTCAAATCACT +CTTTGGCAACGACCCCTTGTCACAGTAAGAATAGGAGGACAGCTAAAAGAAGCTCTATTA +GATACAGGAGCAGATGATACAGTATTAGAAGAAATAGATTTGCCAGGAAAATGGAAACCA +AAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTAAGACAGTATGAACAGATAACTTTA +GAAATTTGTGGAAAAAAGGCCATAGGTACGGTATTAGTAGGACCTACCCCTGTCAACATA +ATTGGAAGAAATATGTTGACTCAGCTTGGTTGTACTTTAAATTTTCCAATAAGTCCTATT +GAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCA +TTAACAGAAGAGAAAATAAAAGCATTAACAGAAATTTGTAGAGAAATGGAAAAGGAAGGA +AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCTATAAAGAAA +AAGGACGGAACTAAGTGGAGGAAATTAGTGGATTTCAGGGAGCTCAATAAAAGAACTCAG +GATTTTTGGGAAGTTCAATTAGGAATACCCCATCCAGCGGGTTTAAAAAAGAAAAAATCA +GTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCGTTAGATAAAAACTTCAGA +AAGTATACTGCATTCACTATACCAAGTATAAACAATGAGACCCCAGGGGTCAGATACCAG +TACAATGTACTTCCACAGGGATGGAAAGGGTCACCAGCAATATTTCAGAGTAGCATGACA +AAAATTTTAGAGCCCTTTAGAGAACGAAATCCAGAAATAGTGATCTATCAATACATGGAT +GATTTATACGTAGGATCTGACTTAGAAATAGGGCAGCATAGAGTAAAAATAGAAGAGTTG +AGACAACATTTATTGAAGTGGGGATTCACCACACCAGATAAAAAACATCAGAAAGAACCC +CCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTGCAGCCTATAGAC +CTGCCAGACAAGGAAAGCTGGACTGTCAATGATATACAGAAATTGGTAGGAAAACTAAAT +TGGGCAAGTCAAATTTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTCAGGGGA +GCAAAAGCACTAACAGACATAGTACCGCTAACTGCAGAAGCAGAATTAGAATTGGCAGAG +AACAGAGAAATTTTAAAAGAGCCAGTGCATGGGGTATACTATGACCCATCAAAAGACTTA +ATAGCAGAAATACAGAAACAAGGACAAGACCAATGGACATATCAAATTTATCAAGAGCCA +TTTAAGAATCTAAAAACAGGAAAATATGCAAAAAGGGGATCTGCTCACACTAATGATGTA +AAACAATTAACAGCAGTGGTGCAAAGGGTGGCCACAGAAAGCATAGTAATATGGGGAAAG +ACCCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAGACATGGTGGATGGAATAC +TGGCAGGCCACCTGGATTCCTGAATGGGAATTTGTCAATACCCCCCCTCTAGTAAAACTA +TGGTACCAGTTAGAGAAAGAACCCATACTAGGAGCAGAAACTTTCTATGTAGATGGGGCA +GCTAATAGGGAGACTAAGATAGGAAAAGCAGGGTATGTTACTGACAGAGGAAGACAAAAG +GTTGTTCCTCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATCCATCTAGCT +TTGCAGGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATT +ATTCAAGCACAACCAGACAGCAGTGAATCAGAGATAGTCAATAAAATAATAGAGAAACTA +ATAGAAAAAGATAGAGTCTACCTGTCATGGGTACCAGCGCACAAGGGGATTGGAGGAAAT +GAACAAGTAGACAAATTAGTCAGTAATGGAATCAGAAGAGTGTTATTTTTAGATGGGATA +GATAAGGCTCAAGAAGAACATGAAAAATATCACAGCAATTGGAAAGCAATGGCTAGTGAT +TTTAATCTGCCACCTATTGTAGCAAAGGAAATAGTAGCCAGCTGTGATAAATGTCAACTA +AAAGGGGAAGCTATGCATGGACAGGTAGACTGTAGTCCAGGGATATGGCAAGTAGATTGC +ACACATCTAGAAGGAAAAGTAATTATAGTAGCAGTCCATGTAGCCAGTGGCTATATAGAA +GCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTTCTGCTAAAATTAGCA +GGAAGATGGCCAGTAAAAGTAGTACACACAGATAATGGCCCCAATTTCACCAGCAGTGCA +GTTAAGGCTGCCTGTTGGTGGGCAGATATCCAACAGGAATTTGGGATTCCCTACAATCCC +CAAAGTCAAGGAGTAGTGGAGTCTATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTA +AGAGAGCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTTATTCACAATTTT +AAAAGAAAAGGGGGGATTTGTAGAGAAATGGAAAAGGAAAGAATAATAGACATAATAGCA +ACAGACATACAAACTAAAGAATTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTT +TATTACAGAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGT +GAAGGGGCAGTGGTAATACAGGACAATAATGATATAAAAGTAGTACCAAGAAGAAAAGCA +AAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAG +GATGAGGATTAAAACATGGAACAGTTTAGTAAAGCATCATATGTATGTCTCAAAGAAAGC +TAAAGAGTGGGTCTATAGACATCACTATGAAAGCAGGCATCCAAGAGTAAGTTCAGAAGT +ACACATCCCGCTAGGGGATGCTAGGCTAGTAGTAAAAACTTATTGGGGTCTGCAGACAGG +AGAAAAAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAGAGAAGGTATAG +CACACAAGTAGACCCTGACCTGGCGGACCAACTAATTCATCTGTATTATTTTGACTGTTT +TTCAGAATCTGCCATAAGGAAAGCCATAGTAGGACACGTAGTTAGCCCTAGGTGTAACTA +TCCAACAGGACACAAACAGGTAGGATCTCTACAATACTTGGCACTGAAAGCATTATTAAC +ACCAACAAGGGAAAAGCCACCTTTGCCTAGTGTTAGGAAACTAACAGAGGATAGATGGAA +CAAGCCCCAGAAGACCAAGGGCCGCAGAGGGAACCATACAATGAATGGATGTTAGAACTG +TTAGAAGATCTTAAGGGTGAAGCTGTCAGACATTTTCCAAGGCTGTGGCTTCAAGGATTA +GGACAACATATCTATAACACCTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGA +ACTTTGCAACAACTACTGTTTGTTCATTTCAGAGTTGGGTGCCAGCATAGCAGAATAGGC +ATTGTGCAAAGGAGAAGAGGCAGAAATGGATCCAGTAGATCCTAACCTAGAGCCCTGGAA +TCATCCAGGAAGTCAGCCTAAGACTGCTTGTAACAAGTGTTACTGTAAAAAGTGTTGCTG +GCATTGCCAAATTTGCTTTCTAAAAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCG +GAGACACAGACGCGGAACTCCTCAAGGCAGTAAGGATCATCAAAATCCTATATCAAAGCA +GTAAGTACTAATGACACCTTTAGAAATCTGGGCAATAGTAGCATTAGTAGTAGTGTTTAT +CATAGCAATAGTTGTGTGGACTATAGTAGGCATAGAATATAGGAGATTGTTAAAACAAAA +GAAAATAGACAGGTTAATTGAGAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAG +CGAGGGGGATGCAGAGGAATTATCAACACTTATGGAGGTGGGGGACCATGTTCCTTTGGT +TGATAATAATGTGTAAGGCTACAGAAAACTTGTGGGTCACGGTATACTATGGGGTACCTG +TGTGGAGAGATGCAGAGACCACCCTATTTTGTGCATCAGATGCTAAAGCATATAGTAAAG +AAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAGCCCACAAGAAA +TGAAATTGGAAAATGTGACAGAAGAATTTAACATGTGGAAAAATAACATGGTAGAACAAA +TGCAAACAGATATAATCAGTCTCTGGGACCAAAGCCTAAAGCCATGTGTAAAGTTAACCC +CTCTCTGCGTTACTTTAAATTGTACTGACTTCAGAAACAGTAGCGGTGAAATGAAAAACT +GCTCTTTCAACATGACCACAGAACTAAGAGATAAAAGGAAAATTGTACACTCACTTTTTT +ATAAACTTGATATAGTATCAATAGATAATACTAATAATAGTCAGTATAGACTAATAAATT +GTAATACATCAACCGTGACACAGGCTTGTCCTAAGGTATCCTTTGAGCCAATTCCTATAC +ATTATTGTACCCCAGCTGGTTTTGCGATTCTAAAGTGCAATGAAAAAAATTTTAATGGAA +CAGGGCCATGCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAGGCCAGTAGTAT +CAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAATGATTAGGTCTGAAA +ATATTACAGACAATGGAAAAATCATAATAGTACAGCTTAATGAGTCTGTAGGCATCAATT +GTATCAGACCTGGCAACAATACAAGAAGAAGTATACGTATAGGACCAGGGCAAGCTTTCT +ATGCAACAGGGGATGTAATAGGGGACATAAGAAAAGCATATTGTGAGGTTAACAAAACAG +CATGGAATAGCGCTTTACGAAAGATAAGTATGCAATTAAAAAATTACTTTAATAATAAAA +CAATAATCTTTAAGGAATCCTCAGGAGGGGATTTAGAAGTTACAACACATAGTTTCAACT +GTGGAGGAGAATTTTTCTATTGCTATACAACAGCCCTGTTCAATAGCACTTGGGACGGAA +ATGAAACTGACACTGGTACAAATAGCACACAGAACAATGAAACTATAACTCTACAATGCA +AAATAAAGCAAATTATAAGAATGTGGCAGAGAGTAGGACAAGCAATGTATGCCCCTCCTA +TCCCAGGAAATATAAATTGTACATCAAACATTACAGGACTACTACTAACAAGAGATGGTG +GAAGTAATAGCACCAATGAGACTTTCAGACCTATAGGAGGAGATATGAGGGACAATTGGA +GAAGTGAACTATATAAGTATAAAGTAGTACAAATTGAACCAATAGGCATAGCACCTACCA +AGGCAAAGAGAAGGGTGGTGGAGAGAGAAAAAAGAGCAATTGGAATAGGAGCTGCCTTCA +TTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTAC +AGGCCAGACAATTATTGTCTGGCATAGTGCAACAGCAAAGCAATTTGCTGATGGCTATAG +AGGCTCAGCAGCATCTGCTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAG +TCCTGGCTGTGGAAAGGTACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTG +GAAGACTCATCTGCACCACCAATGTGCCCTGGAACTCTAGTTGGAGTAATAAAACTTATG +ATGAGATATGGGATAACATGACCTGGATGCAATGGGACAAGGAAATTATCAATTACACAA +ACAAAATATATGATCTAATTGAACAATCGCAAAAACAGCAGGAAAAGAATGAACAAGATT +TATTATCATTGGATAAGTGGACAAGCCTGTGGAGTTGGTTTAACATAACAAATTGGTTAT +GGTATATAAAAATATTTATAATAATAGTAGGAGGCTTAATAGGCCTAAGAATAGTTTTTG +CTGTGCTTTCTATAATAAATAGAGCCAGGCAGGGATACTCACCCTTGTCGTTGCAGACCC +TTATCCCACACCCAGAGGGACCAGACAGGCCCAGAGGAATCGAAGAAGAAGGTGGAGAGC +AAGGCAGAACCAGATCGATTCGCTTAGTGAGCGGATTCTTAACACTTGTCTGGGACGACC +TGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTCATCTCGATTGCAGCGA +GGACTGTGGAACTTCTGGGACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGGGCC +TCAAATATCTGGGGAATCTTCTGGAATATTGGGGTCAGGAGCTAAAGAGTAGTGCTATTA +ATCTGATAGATAGACTAGCAATAGCAGTAGCTGAGTGGACAGATAGGGTTTTAGAAATAG +TACAAAGATTTGGTAGAGCTATTCGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAA +AGGCTTTGCAATAACATGGGGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGACTCAG +ATTAGGGAAAGAATGAGACGAGCTCCTGCTCCAGCAGCAAGAGGAGTAGGTCCAGTATCT +CAAGATTTGGATAAGCATGGAGCAGTCACAAGCAGTAACACAGCAGCAACTAATGCTGAT +TGTGCCTGGCTGGAGGCGCAAGAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCGCAGGTA +CCTTTGAGACCGATGACATTTAAGGGAGCTGTTGATCTCAGCCACTTTTTAAAAGAAAAG +GGGGGACTGGATGGGCTAATTTACTCCAAGAAAAGACAAGAAATCCTTGATCTGTGGGTC +TATCACACACAAGGCTACTTCCCTGATTGGCAGAATTATACCCCAGGGCCAGGGACTAGA +TTCCCACTAACATTTGGGTGGTGCTACAAGCTAGTACCAGTTGACCCAGCTGATGTAGAA +GAGGCCACAGAGGGAGAGAACAACAGCCTACTACATCCTATATGCCAACACGGAATGGAG +GATGAAGAAAGAGAAGTGTTAATGTGGAAGTTTGACAGTCGCCTGGCTCTAACACACAGA +GCCCGAGAGCTGCATCCGGAGTTCTACAAAGACTGCTGACACAGACTGCTGACATGAAGT +TGCTGACAGGGACTTTCCGCAGGGACTTTCCAGGGGGGTGTGGTTTGGGCGGAGTTGGGG +AGTGGCTAACCCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTC +TGGTTAGACCAGATCG +>A6.UA.2012.0.DEMA112UA040.KY658682 KY658682 +CCGTCGGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGGCGGTGTAAAA +ATCTCTAGCAGTGGCGCCCGAACAGGGACCCGAAAGCGAAAGTTCCAGAGAAGTTCTCTC +GACGCAGGACTCGGCTTGCTGAAGTGCGCACAGCAAGAGGCGAGAGCGGCGACTGGTGAG +TACGCCTAAAGATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCA +GTATTAAGCGGGGGAAAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAG +AAACAATATAGAATAAAACACCTAGTATGGGCAAGCAGGGAGCTGGACAGATTCGCGCTT +AACCCTAGCCTTTTAGAAACATCAGAAGGATGTCAACAAATACTAGAAAAACTCCAACCA +GCTCTCAATACAGGAACAGAAGAGATTAAATCATTATATAATACAGTAGCAACCCTCTAT +TGTGTACATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGATAAAATAGAGGAA +ATACAAAATAAGAGCAAGCAAAAGACCCAACAGGCAGCAGCTGGCGCAGGAAGCAGCAGT +AAGGTCAGTCAAAATTACCCCATAGTGCAAAATGCACAAGGGCAAATGGTACACCAGTCC +ATTTCACCTAGGACTTTGAATGCATGGGTGAAAGTAATAGAAGAAAAGGCTTTCAGCCCA +GAAGTAATACCCATGTTTTCAGCATTGTCAGAAGGAGCCACCCCACAAGATTTAAACATG +ATGCTGAACATAGTGGGGGGACACCAAGCAGCTATGCAAATGTTAAAAGATACCATCAAT +GAGGAAGCTGCTGAATGGGATAGGTTACATCCAGCACAGGCAGGGCCTTTTCCAGCAGGG +CAGATGAGAGAACCTAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAA +ATAGGATGGATGACAAGTAACCCACCTATCCCAGTGGGAGACATCTATAAAAGATGGATA +ATCCTAGGATTAAATAAGATAGTAAGAATGTATAGCCCTACTAGCATCTTAGACATCAGA +CAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTCTTTAAAACTCTTAGAGCT +GAGCAAGCTACACAGGAGGTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCC +AATCCAGATTGTAAAACCATTTTAAGAGCATTAGGACCAGGGGCTACATTAGAAGAAATG +ATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGGGTTTTGGCTGAGGCA +ATGAGTCAAGTACAAAATACAAGCATAATGATGCAAAAAAGTAATTTTAGAGGCCCAAAA +AGAATTAAGTGTTTCAACTGTGGTAAAGAAGGACACCTAGCCAGAAATTGCAGGGCCCCT +AGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAG +AGACAGGCTAATTTTTTAGGGAGAATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTT +CCTCAGAGCAGACCAGAGCCATCAGCCCCACCAGCAGAGGAGTTTGGGATGGGGGAAGAG +ATGACCCCCTCCCTGAGACAGGAACAGAGAGACAGGGAACAACATCCTCCTTCAATTTCC +CTCAAATCACTCTTTGGCAACGACCCATTGTCACAGTAAGAATAGAAGGACAGCTAAAAG +AAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGGAA +AATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTAAGACAGTATGATC +AAATAGTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTATTAGTAGGACCTACCC +CTGTCAACATAATTGGAAGAAATATGTTGACTCAGATTGGTTGTACTTTAAATTTTCCAA +TAAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTTA +AACAATGGCCATTATCAGAAGAGAAAATAAAAGCATTAACAGACATTTGTAATGAAATGG +AAAAAGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTG +CTATAAGGAAAAAGGACAGCACTAAGTGGAGAAAATTAGTAGATTTCAGGGAGCTCAATA +AAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCCCATCCAGCGGGCTTAAAAA +AGAAAAAATCAGTAACAGTACTAGATGTAGGGGATGCATATTTTTCAGTTCCTTTAGATG +AAAATTTCAGAAAGTATACTGCATTCACTATACCAAGTATAAACAATGAGACACCAGGGA +TCAGATATCAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAGT +GTAGCATGACAAAAATCTTAGAGCCCTTTAGATTAAAAAATCCAGAAATAGTTATCTATC +AATACATGGATGACTTGTATGTAGGCTCTGATTTAGAAATAGGGCAACATAGAACAAAAA +TAGAGGAGTTGAGAGCTCATCTATTGAGTTGGGGATTTACTACACCAGACAAAAAGCATC +AGAAAGAACCCCCATTCCTGTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTTC +AGCCTATAGTGCTGCCAGATAAAGACAGCTGGACTGTCAATGACATACAGAAACTAGTGG +GAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAATTGTGTAAAC +TCCTCAGGGGAGCCAAAGCACTGACAGATATAGTGACACTGACAGCGGAAGCAGAATTAG +AATTGGCAGAGAACAGAGAGATTCTAAAAGAACCGGTGCATGGAGTATATTATGATCCAT +CAAAAGATTTAGTAGCAGACATACAGAAACAAGGACAAGGTCAATGGACATATCAAATCT +ATCAGGAGCCATTTAAGAATCTAAAAACAGGAAAATATGCAAAAAAGGGGTCTGCTCATA +CTAATGATGTAAGACAATTAACAGCAGTGGTGCAAAAAGTGGCCACAGAAAGTATAGTAA +TATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGT +GGATGGAGTACTGGCAGGCCACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTC +TAGTAAAACTATGGTACCAGTTGGAGAAAGAACCCATAGTAGGAGCAGAGACTTTCTATG +TAGATGGGGCAGCTAATAGGGAGACTAAAATAGGAAAAGCAGGGTATGTTACTGACAGAG +GAAGACAAAAGGTTGTTCCTCTAAATGAGACAACAAATCAAAAGACTGAATTACATGCAA +TCTATCTAGCTTTACAGGATTCAGGATTAGAAGTAAATATAGTAACAGACTCACAATATG +CATTAGGAATTATTCAGGCACAACCAGACAGAAGTGAATCAGAGATAGTTAATCAAATAA +TAGAGAAGCTAATAGAAAAAGAAAGAGTCTACCTGTCATGGGTACCAGCACACAAAGGGA +TTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAGGGTGTTATTTC +TAGAAGGGATAGATAAGGCTCAAGAAGATCATGAAAAATATCACAGCAATTGGAAAGCAA +TGGCTAGTGATTTTAATCTGCCACCTATAGTAGCAAAGGAAATAGTAGCCAGCTGTGATA +AATGTCAACTAAAAGGGGAAGCTATGCATGGACAGGTAGACTGTAGTCCAGGAATATGGC +AATTAGATTGCACACATCTAGAGGGAAAAGTAATCATAGTAGCAGTCCATGTAGCCAGTG +GCTATATAGAAGCAGAGGTTATCCCAGCAGAAACAGGACAGGAGACAGCATATTTTCTGC +TAAAATTAGCAGGCAGATGGCCAGTAAAAGTAGTACACACAGATAATGGCCCCAATTTCA +CCAGCAGCGCAGTTAAGGCTGCCTGTTGGTGGGCAGATATCCAACAGGAATTTGGGATTC +CCTACAATCCCCAAAGTCAAGGAGTAGTGGAGTCTATGAATAAGGAATTAAAGAAAATCA +TAGGGCAGGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAGTTCAAATGGCAGTATTCA +TTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAG +ACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAA +ATTTTCGGGTTTATTACAGAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTAC +TCTGGAAAGGTGAAGGGGCAGTGGTAATACAGGACAATAACGATATAAAAGTAGTACCAA +GAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGG +CAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCACATGTATGTC +TCAAAGAAAGCTAGAAAGTGGTTTTATAGACATCATTATGAAAGCAGGCATCCAAAAGTA +AGTTCAGAAGTACACATCCCACTAGGGGATGCTTGTCTAGTAGTAACAACATATTGGGGT +CTGCATACAGGAGAAAAAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAA +AGAAGGTATAGCACACAAATAGACCCTGACCTGGCGGACCAACTAATTCATCTGTATTAT +TTTGAATGTTTTTCAGAATCTGCCATAAGGGGAGCCATATTAGGACAAATAGTTAGCCCT +AGGTGTAACTACTCAGCAGGACACAACAAGGTAGGATCTCTACAATACTTGGCACTGAAA +GCATTAGTTACACCAACAAGGGAAAGGCCACCTTTGCCTAGTGTTAGGAAACTAACAGAG +GATAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAACCATACAATGAATGGA +TGTTAGAACTGTTAGAAGATATTAAGCATGAAGCTGTCAGACATTTTCCAAGGCCGTGGC +TTCATGGATTAGGACAACATATCTATAACACCTATGGGGATACTTGGGAAGGGGTTGAAG +CCATAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGCCAACATA +GCAGAATAGGCATTGTGCAAAGGAGAAGAGGCAGGAATGGATCCAGTAGATCCTAACCTA +GAGCCCTGGAAGCACCCGGGAAGCCAGCCTAAAACTGCTTGTAGCAATTGTTACTGTAAA +AGATGTTGCTGGCATTGCCAAATTTGCTTTCTAAAAAAAGGCTTAGGCATTTCCTATGGC +AGGAAGAAGCGGAGACACAGACGCGGAACTCCTCACGGCAGTAAGGATCATCAAAATCCT +ATATCAAAGCAGTAAGTACTAAATGTAATGACACCTTTAGAAATCTATGCAATAATAGCA +TTAGTAGTAGTATTTGTTATAGCAATAGTTGTGTGGACTATAGTAGGCTTAGAATATAGG +AAATTACTAAAACAAAGAAAAATAAACAGGTTAATTGAAAGAATAAGAGAAAGAGCAGAA +GACAGTGGCAATGAAAGCGAGGGGGATGCAGAGGAATTATCAACACTTATGGAGGTGGGG +GACTATGCTCTTTTGGATGATAATAATGTGTAAGGCTGCAAACTTGTGGGTCACAGTATA +CTATGGGGTACCTGTGTGGAGAGATGCAGAGACCACCCTATTTTGTGCCTCAGATGCCAA +GGCTTATGATAAAGAAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCC +TAACCCACAAGAAATAATTTTAGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAA +CATGGTAGAACAAATGCACACAGATATAATCAGTCTCTGGGACCAAAGTCTAAAGCCATG +TGTACAACTAACCCCTCTCTGTGTTACTTTAAATTGTACTGAACCCACTATCGACAGTAA +CAATAACAGCACTAACACCAGCTAYAATAGAAAGATTGAAGAAATGAGAAACTGCTCTTT +CAACATAACCACAGAACTAAATGATAAACAGAAAAAAGTACATTCACTTTTTTATAAACT +TGATATAGTACCAACTGATAATGGTAGTAGTCAGTATAGACTAATAAATTGTAATACATC +AACCATGACACAGGCCTGTCCTAAGGTATCCTTTGAGCCAATTCCTATATATTATTGTAC +CCCAGCTGGTTTTGCGATTATAAAATGCAATGATGCAAATTTTACAGGAATAGGGCCATG +CAGGAATGTCAGCACAGTACAATGTACACATGGAATCAAGCCAGTAGTATCAACTCAATT +GCTGTTAAATGGTAGTCTAGCTGAGAAAGAGATAATGATTAGATCTGAGAATATCACAGA +CAATACTAAAAACATAATAGTACAGCTTACTAAGGCTGTAAACATCACTTGCTCCAGACC +TGGCAACAATACAAGAACAAGTATACCTATAGGACCAGGACGAGCCTGGTTTGCAACAGG +TGATGTAACAGGGGATCCAAGGAAAGCACATTGTAATGTCAGCAAAGCAGATTGGACTAG +CACTTTAAAAAATATAAGTATACAATTAAGAAAACACTTTAACAAAACAATAATCTTTCA +GAATTCCTCAGGAGGGGATTTAGAAGTTACAACACATAGTTTCAATTGTGGGGGAGAATT +TTTCTATTGCAATACAACAGAACTGTTCAATAGCACTTGGAATGGCACTGACACAAACAG +CACAGAGGACAATAATGTAAATATAACTATACCATGCAGAATAAAGCAAATTATAAATAT +GTGGCAGAGAGTAGGACGAGCAATGTATGCCCCTCCTATCAGAGGAAATATAACTTGTGA +ATCAAACATTACAGGACTACTACTAACAAGAGATGGTGGTAAAGAGAAAAATGACAACGA +AACCTTTAGACCTATAGGAGGAAATATGAAGGACAATTGGAGAAGTGAACTATATAAGTA +TAAAGTAGTAGAAATTAACCCAATAGGAGTAGCACCTACCCCGGCAAAGAGAAGAGTGGT +GGAGAGAGAAAAAAGAGCAGTTAGCCTAGGAGTTGCCTTCCTTGGGTTCTTAGGAGCAGC +AGGAAGTACTATGGGCGCGGCGTCACTGACGCTGACGGTACAGGCCAGACAACTATTGTC +TGGCATAGTACAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCTCAGCAGCAATTGCT +GAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATA +CCTAAGAGATCAGCAACTCCTAGGAATTTGGGGTTGCTCTGGAAAACTCATCTGCACCAC +TACTGTGCCCTGGAACTCTAGTTGGAGTAATAGATCTCAGGATGATATATGGAATAACAT +GACCTGGATGCAATGGGACAGGGAAGTTAGCAATTACACAGAATTAATATATAAGCTAAT +TGAAGAATCGCAAAACCAGCAGGAAAAGAATGAACAAGATTTATTGGCATTGGATGAGTG +GGCAAGTCTGTGGAATTGGTTTAAAATAACACAGTGGTTATGGTATATAAAAATATTTAT +AATGATAGTAGGAGGCTTAATAGGATTAAGGATAGTTTTTGCTGTGCTTTCTATAGTAAA +TAGAGTCAGGCAGGGATACTCACCCTTGTCATTGCAGACCCCAAACCCACACCCAGAGGG +ACCAGACAGGCCCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGGCAGAGACAGATCGAT +TCGATTAGTGAGCGGATTCTTAGCACTTGTCTGGGACGACCTGCGGAGCCTGTGTCTTTT +CAGCTACCACCGATTGAGAGACTTCATCTTGATTGCAACGAGGACTGTGGAACTTCTGGG +ACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGGGCCTCAAATATCTGGGGAATCT +TCTGGGATATTGGGGTCAGGAGCTAAAGAGTAGTGCTATAAGTCTGATAGATACCATAGC +AATAGTAGTAGCTGGGTGGACAGATAGGGTTTTAGAACTAGGACAGAGAATTTGTAGAGC +TATTTGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAAGAGCTTTGCAATAACATGG +GGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGATTAGGGACAGAATAAGAC +GAACTCCTGCTCCAGCAGCACCAGGAGTAGGACCAGTATCTCAAGATTTGGATAAGCATG +GAGCAGTCACAAGCAGTAATACAGCAGCTACTAATGCTGATTGCGCATGGCTGGAAGCGC +AAGAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCGCAGGTACCTTTGAGACCAATGACAT +ATAAGGGAGCTTTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAA +TTTACTCCCAGAAAAGAAGAGAAATCCTTGATCTATGGGTCTATCACACACAAGGCTACT +TCCCTGATTGGCAGAATTACACCCCAGGGCCAGGGATTAGATACCCACTAACATTTGGGT +GGTGCTACAAGCTAGTACCAGTTGACCAAGATGTGGTAGAAGAGGCCACAGTGGGAGAGA +ACAACAGCCTATTACACCCTATATGCCAACATGGAATGGATGATGAAGAGAAAGAAGTGT +TAATGTGGAAGTTTGACAGTCGCCTGGCTCTAAAACACAGAGCCCGAGAGCTGCATCCGG +AGTTCTACACAGACTGCTGACATGAGATTGCTGACAGGGACTTTCCGCGGGGACTTGGGA +CTTTCCAGGGGAGGTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAACCCTCAGATGCTGCA +TATAAGCAGCGGCTTTTCGCCTGTACTGGGTCTCTCTGGTTAGACCAGATTAGAGCCTGG +GAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTG +CTTGAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCA +CTCTAGGCGGTGTAAAAATCTCTAGC +>A6.RU.2016.0.RU_ERS_1102_2016.MT369982 MT369982 +TGCTGAGGTGCACRCAGCAAGAGGCGAGAGCGGCGGCTGGTGAGTACGCCTGATTTTTGA +CTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAA +TTAGATAAATGGGAAAAAATACGGTTAAGGCCAGGGGGAAGGAAACAATATAGAATAAAA +CACCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTTGCGATTAACCCTGGCCTTTTAGAA +ACAGCAGAAGGATGTCAACAAATACTAGAACAGTTACAACCAAGTATCAAGACAGGATCA +GAAGAAATTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGATA +GAAATAAAAGACACCAAGGAAGCTTTAGATACAATAGAGGAATTGCAAAATAAGAACAAG +CAAAAGACCCAACAGGCAGAGGCTGGCACAGGAAGCAGCAGCAAGGTCAGTCACAATTAC +CCCATAGTGCAAAATGCACAAGGGCAAATGATGCACCAGGCCATGTCACCTAGGACTTTR +AATGCATGGGTAAAAGTAATAGAAGAAAAGGCTTTTAGCCCAGAAGTAATACCCATGTTC +TCAGCATTATCAGAGGGAGCCACCCCACAAGATTTAAACATGATGCTGAACATAGTGGGG +GGACATCAGGCAGCTATGCAAATGTTAAAAGATACCATCAATGAGGAAGCTGCTGAATGG +GATAGGTTACATCCAGCACAAGCAGGGCCTTTTCCACCAGGGCAAATGAGAGAACCAAGG +GGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAGCAAATAGGATGGATGACAAGC +AACCCACCTATTCCAGTGGGAGACATCTATAAAAGATGGATAATCCTGGGATTAAATAAA +ATAGTAAGAATGTATAGCCCTGTTAGCATTTTAGACATAAGACAAGGGCCAAAAGAACCC +TTCAGAGACTATGTAGATAGGTTCTTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGAG +GTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCAAATCCAGATTGTAAAAAT +ATTTTAAGAGCATTAGGACCAGGGGCTACATTAGAAGAAATGATGACAGCATGCCAGGGA +GTGGGAGGACCCGGCCATAAAGCAAGGGTTTTGGCYGAGGCAATGAGTCAAGTACAARGT +GCAAATATAATGATGCAGAAAAGTAATTTTAGGGGCCCAAAAAGAATTAAGTGTTTCAAC +TGTGGCAAAGAAGGACACCTAGCTAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGG +AAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTA +GGGAGAATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTTCCTCAGAGCAGACCAGTA +CCATCAGCCCCACCAGCAGAAGACTTCGGGATAGGGGAAGAGATAACCCCCTCCCTGAAA +CAGGAACAGAAAGACAGGGAACAGTGTCCTCCTTCAGTTTCCCTCAAATCACTCTTTGGC +AACGACCCMTTGTCACAGTAAGAATAGGAGGACAGCTAAAAGAAGCTCTATTAGATACAG +GAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGGAAAATGGAAGCCAAAAATGA +TAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACTTATAGAAATTT +GTGGAAAAAAGGCTATAGGTACGGTATTAATAGGACCTACCCCTGTCAACATAATTGGAA +GAAATATGTTGACTCAGATTGGTTGTACTTTAAATYTKCCAATAAGTCCTATTGAAACTG +TACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTATCAG +AAGAAAAAATAAAAGCATTAATAGACATTTGTAGTGAGATGGAAAAGGAAGGAAAAATTT +CAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGTTATAAAGAAAAAAGATA +GCACTAAGTGGAGGAAATTAGTAGATTTCAGGGAGCTCAATAAAAGAACTCAGGACTTTT +GGGAAATTCAATTAGGAATACCCCATCCAGCGGGTTTAAAAAAGAAAAAATCAGTAACAG +TACTGGATGTAGGGGATGCATATTTTTCAGTTCCTTTAGATGAAAACTTCAGAAAGTATA +CTGCATTCACTATACCAAGTACAAACAATGAGACACCAGGGATCAGATATCAGTACAATG +TACTCCCACAGGGATGGAAAGGATCACCATCAATATTCCAGGCTAGCATGACAAAAATCT +TAGAGCCCTTTAGATTAAAAAATCCAAACATAGTTATCTATCAATACATGGATGACTTGT +ATGTAGGCTCTGATTTAGAAATAGGTCAGCATAGGACAAAAATAGAGGAGTTAAGAGCTC +ATCTATTGAGCTGGGGATTTACTACACCAGACAAAAAGCATCAGAAAGAACCTCCATTTC +TTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAGCCTATAGTGCTACCAG +ATAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTAGGAAAACTAAATTGGGCAA +GTCAGATTTATCCAGGGATTAAAGTAAARCAATTATGTAAACTCCTCAGGGGAGCCAAAG +CACTGACAGATATAGTGACACTGACTAAGGAAGCAGAATTAGAATTGGAAGAGAACAGAG +AGATTCTAAAAGAACCTGTGCATGGAGTATATTATGATCCATCAAAAGATTTAGTAGCAG +AAATACAGAAACAAGGARAAGACCAATGGACATATCAAATTTATCAGGAGCCATTTAAAA +ATCTGAAAACAGGAAAATATGCAAAAAAGGGGTCTGCTCACACKAATGATGTAAAACAAT +TGACAGCAGTGGTGCAAAAAGTGGCCACAGAAAGCATAGTAATATGGGGAAAGACTCCTA +AATTTAGATTACCCATACAAAAAGAAACATGGGAAGCATGGTGGATGGAGTACTGGCAGG +CTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTCTAGTAAAGCTATGGTACC +AGTTGGAGAAAGAACCCATAATAGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTAACA +GGGAGACTAAGATAGGAAAAGCAGGGTATGTTACTGACAGAGGAAGACAAAAGGTTGTTC +CTCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATCYATCTAGCTTTGCAGG +ATTCAGGACCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATTATTCAGG +CACAACCAGACAGAAGTGAGTCAGAGATAGTCAATAAAATAATAGAGAAACTAATAGAAA +AAGAAAGAGTCTACCTGTCATGGGTACCAGCRCACAAGGGGATTGGAGGAAATGAACAAG +TAGATAAATTAGTCAGTAATGGAATCAGGAGGGTGTTATTTTTAGAAGGGATAGACAAGG +CTCAAGAAGAACATGAAAAATATCACAGCAATTGGAAAGCAATGGCTAGTGATTTCAATC +TGCCACCTGTAGTAGCAAAGGAGATAGTAGCCAGCTGTGATAAATGCCAATTAAAAGGAG +AAGCTATGCATGGACAGGTAGACTGTAGTCCAGGGATATGGCAATTAGATTGCACACATC +TAGAAGGAAAAGTAATCATAGTAGCAGTCCATGTAGCCAGTGGCTATATAGAAGCAGAAG +TTATTCCAGCAGAAACAGGACAGGAGACAGCATACTTCCTGCTAAAACTAGCAGGAAGAT +GGCCAGTGAAARTAGTACACACAGATAATGGCCCAAATTTCACCAGCAGTGCAGTTAAGG +CTGCCTGTTGGTGGGCAAATATCCAACAGGAATTTGGAATTCCCTACAATCCCCAAAGTC +AAGGAGTAGTGGARTCTATGAATAAGGAATTAAAGAAAATCATAGGGCAAGTAAGAGAGC +AAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAA +AAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGRATAATAGACATAATAGCAACAGACA +TACAGACCAAAGAATTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACA +GAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGG +CAGTGGTAATACAGGACAATAACGATATAAAAGTAATACCAAGAAGAAAGGCAAAGATCA +TTAGGGATTATGGAAAACAGATGGCAGGGGATGATTGTGTGGCAAGTAGACAGGATGAGG +ATTAGAACATGGAATAGTATAGTAAAACATCATATGTATATCTCAAAGAAAGCTAGAGGG +TGGGTTTATAGACATCACTATGAAAGCAGAAATCCAAGAGTAAGTTCAGAAGTACACATC +CCACTAGGGGATGCTAGGCTAGTAGTAAAAACATATTGGGGTCTGCATACAGGAGAAGAA +GACTGGCACTTGGGTCACGGGGTCTCCATAGAATGGAGACAGGAAAGGTATAGCACACAA +GTAGACCCTGACCTGGCGGACCAACTAATTCATCTGTATTATTTTGACTGTTTTTCAGAA +TCTGCCATAAGGAARGCCATAGTAGGACACGTAGTTAGCCCTAGGTGTAACTATCCATCA +GGACACAACAAGGTAGGATCTCTACAATACTTGGCACTGAAAGCAATAGTACCACAAACA +AGGGAAAGGCCACCTTTGCCTAGTGTTAGGAAACTAACAGAGGATAGATGGAACAAGCCC +CAGAAGACCAGGGGCCGCAGAGGGAACCATACAATGAATGGATGTTAGAACTGTTAGAAG +ATCTTAAGAATGAAGCTGTCAGACATTTTCCAAGACYGTGGCTCCAKGAWTTAGGACAAC +ACATTTATAACACCTATGGGGATACTTGGACAGGGGTTGAAGCTATAATAAGAAYTTTGC +AACAACTATTGTTTGTTCATTTCAGAATTGGGTGCCAMCATAGCAGAATAGGCATTGTGC +AAAGGAGAAGAGTCAGGAATGGATCCAGTAGATCCTAACCTAGAGCCCTGGRADCATCCG +GGAAGTCAGCCTAAAACTGCTTGTAGCAATTGTTAYTGTAAAAAATGTTGCTGGCATTGT +CAAGTGTGCTTCTTAAAMAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGAAGC +AGACGCGGAACTCCTCRCAGCARTAAGGAYCATCAAAWTMTTATAYCAAAGCAGTAAGTA +CTAAATAAATGTAATGAYACCTTTAGAAATCTATGCAATAGTAGCATTAGTAGTAGTGGC +TATCATAGCAATAGTTGTGTGGACTATAGTAGGTATAGAATATAGGAAATTGTTAAAACA +AAGAAAAATAGACAGGTTAATTGAGAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGA +AAGCGAGGGGGATGAAGAAGAATTATCAACAMTTATGGATAGGGGGAACCTTGCTCTTTT +GGATATTAATAATGTGTAAGGCTACAGAAAACTTGTGGGTCACGGTATACTATGGGGTAC +CTGTGTGGAGAGATGCAGAGACCACCCTATTTTGTGCATCAGATGCTAAAGCATATGATA +AAGAAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAACCCACAAG +AAATAGATTTGGAAAATGTGACAGAAAACTTTAACATGTGGAAAAATAACATGGTAGAAC +AAATGCAAACAGATATAATCAGTCTCTGGGACCAAAGCCTAAAGCCATGTGTAARKTTRA +CCCCTCTCTGTGTYACTTTAAATTGTRYKGAACCCAACAGCACCARCTATAACAACAGTA +GCACTAATAGCAGCARCAGTGATAATTTGTATAAAGAAATGAAAAACTGCTCTTTCAACA +TGACCACAGAAGTAAGAGATAAAAGGAAAACTGTATATTCACTTTTTTATAAACTTGATA +TAGTATCAACTGATAGTAATAGTAGTAGTGGACAGTATAGACTAATAAATTGCAATACAT +CAACCATGACACAGGCATGTCCTAAGGTAACCTTTGAGCCAATTCCTATACATTATTGTG +CCCCAGCTGGTTTTGCGATTCTAAAGTGCAAGGATCCAAAATTTAATGGAACAGGGCCAT +GCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGYAGTATCAACTCAAC +TGCTGCTAAATGGCAGTCTAGCAGAGGATGTAATGATTAGATCTGAAAATATCACAGACA +ATAGCAAAATCATAATAGTACAGCTTAATGAGCCTGTAAACATCACTTGTATCAGACCTG +GCAACAATACAAGAACAAGTGTACGTATAGGACCAGGACAAACCTTCTATGCAACAGGTR +AGGTAATAGGGGACATAAGAAAAGCACATTGTGAGGTCAACAAAACAGAATGGAAKAGTG +CTCTAAGMAAGATAAGTACACAATTAAGAAAATATTTTAATAACAAAACAATAGTCTTTC +AGARMTCCTCAGGGGGGGATTTAGAAATTACAACACATAGTTTCAATTGTGGAGGAGAAT +TTTTCTATTGCAATACAACAGCCCTGTTCAATAGCACTTGGGACAAYAATAATGACACTR +TCACAAATGDCACARAKGACAATRAAAATATAACTACTCTGCCATGCAGAATAAAGCAAA +TTATAAAWATGTGGCAGAGAGTAGGACAAGCAATGTATGCCCCTCCTATCCCAGGAAGTA +TAAGGTGTGARTCAAACATTACAGGATTACTACTAAYAAGAGATGGTGGAGATARAAATA +GTAGCAATGAGACCTTCAGACCTATAGGAGGAGACATGAGGGACAATTGGAGAAGTGAAC +TATATAAGTATAAAGTAGTAAAAATTGAACCAATAGGAGTAGCACCTACCAAGGCAAAGA +GAAGAGTGGTGGAGAGAGAAAAAAGAGCAATTGGACTGGGAGCTGCCTTCCTTGGGTTCY +TAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGAC +AATTGTTGTCTGGCATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCTCAGC +AGCATCTGCTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTG +TGGAAACATACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTGGAAAACTCA +TCTGCACCACTAATGTGCCCTGGAACTCTAGTTGGAGTAACAAATCTCTGAATGAGATAT +GGGAHAACATGACCTGGATGCAATGGGACAAGGAAGTTATCAACTACACAGGCATAATAT +ATGATCTAATTGAAAAATCGCAAAACCAGCAGGAAAAGAATGAACAAGAGTTATTGGCAT +TGGATAAGTGGGCAAGTCTGTGGAATTGGTTTGACATATCAAATTGGTTATGGTATATAA +AAATATTTATAATAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTGCTGTGCTTT +CTATAATAAATAGAGTCAGGCAGGGATACTCACCCTTGTCATTGCAGATCCCTACCCCAC +ACCCAGAGGAACCAGACAGGCCCGGAAGAATCAACGAAGAAGGTGGAAAGCAAGGCAGAG +ACAGATCAGTGCGATTAGTGAGCGGATTCTTAGCACTTTTCTGGGACGATCTGAGGAGCC +TGTGCCTCTTCTGCTACCACCTATTGAGAGACTTCATCTTGGTTGTAGCGAGGACGGTGG +AACTTCTGGGACGCAACAGCCTCAAGGGACTGAGACTGGGGTGGGAGGGCCTCAAGTATC +TGGGGAATCTCCTGGAATATTGGGGTCAGGAACTAAAGAGTAGTGCTATCAATCTCATAG +ATACCATAGCAATAGTAGTAGCTGGATGGACAGATAGGGTTMTAGAATTAGGACAAAGAD +TTTGTAGAGCTATTTGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAAGAGCTTTGC +AATAAAATGGGGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGGTAAGGGAA +AGAATAAGACGAGCTCCTGCTCCAGCAGCAATAGGAGTAGGACCAGTATCACAGGATTTA +GATAAGCATGGAGCAGTTACAAGCAGTAATACAGCAGCTACTAATGCTGATTGTGCCTGG +CTGGARGCACAAGAGGACGAGGAAGTAGGCTTTCCAGTCAGGCCACAGGTACCTYTGAGA +CCAATGACATATAAGGGAGCATTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTG +GATGGGCTAATTTACTCCAAGAAAAGACAAGAAATCCTTGATCTGTGGGTCTATCACACA +CAAGGCTACTTCCCTGATTGGCAGAATTATACCCCAGGGCCAGGGATTAGATACCCACTA +ACCTTTGGGTGGTGCTACAAGCTAGTACCCGTTGACCCAGAGGWAGTAGAAGAGRCCACA +GAGGGAGAGAACAACAGCCTATTACACCCTATATGCCAACACGGAATGGATGATGAGGAA +AGAGAAGTGTTAATGTGGAAGTTTGACAGTCACCTGGCTCTAACACACARAGCCCGAGAG +MTACATCCGGAGTACTACAAAGACTGCTGACACAGACTGCTGACATGAAGTTGCTGACAG +GGACTTTCTACGGGACTTTCCGGGGAGGTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAAC +CCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTCTGGTTGGACC +AGATCG +>A6.RU.2006.0.RU_915_1035.JQ292897 JQ292897 +CTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCA +CTCTAGGCGGTGTAAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGT +TCCAGAGAAGTTCTCTCGACGCAGGGCTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGA +GAGCGGCGACTGGTGAGTACGCCTAAAGATTTTTGACTAGCGGAGGCTAGAAGGAGAGAG +ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGG +TTAAGGCCAGGGGGAAGGAAAAAATATAGAATAAAACACCTAGTATGGGCAAGCAGGGAG +TTGGAAAGATTCGCGCTTAACCCCAGCCTTTTAGAAACATCAGAAGGATGTCAACAACTA +CTGGAACAGTTACAATCAACTCTCAAGACAGGATCAGAAGAACTTAAATCATTATATAAT +ACAATAGCAACCCTCTATTGTGTACATCAACGGATAGAGATAAAAGACACCAAGGAAGCT +TTAGATAAAATAGAGGAAATACAAAATAAGAGCAGGCAAAAGACCCAACAGGCAGCAACT +GGCACAGGAAGCAGCAGCAAGGTCAGTCAAAATTACCCCATAGTGCAAAATGCACAAGGG +CAAATGGTACACCAGTCCATATCACCTAGGACTTTGAATGCATGGGTGAAAGTAATAGAA +GAAAAAGCTTTYAGCCCAGAAGTAATACCCATGTTTTCAGCATTGTCAGAGGGAGCCACC +CCACAAGATTTAAACATGATGCTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAATG +TTGAAAGATACCATCAATGAGGAAGCTGCTGAATGGGATAGGTTACATCCAGCACAGGCA +GGGCCTTTTCCACCAGGGCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACT +AGTACCCTTCAAGAACAAATAGGATGGATGACAAGCAACCCACCTATCCCAGTGGGAGAC +ATCTATAAAAGATGGATAATCCTAGGATTAAATAAGATAGTAAGAATGTATAGCCCTGTT +AGCATTTTAGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTC +TTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGATGTAAAGAACTGGATGACAGATACC +CTGCTGGTCCAAAATGCAAATCCAGATTGTAAAACCATTTTAAGAGCATTAGGACCAGGG +GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAAGCA +AGGGTTTTGGCCGAGGCAATGAGTCAAGTACAAAATGCAAACATAATGATGCAGAAAAGT +AATTTTAGAGGCCCAAAAAGAATTAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCC +AGAAAYTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGCCATCAA +ATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAG +GGGAGGCCAGGAAATTTTCCTCAGAGCAGACCAGAACCATCAGCCCCACCAGMAGAGARC +TTTGGGATGGGGGAAGAGATAACCCCCTCCCTGAAACAGGAACAGAGAGACAGGGAACAG +CATCCTCCTTCAATTTCCCTCAAATCACTCTTTGGCAACGACCCATTGTCACAATAAGAA +TAGGAGGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAG +ACATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCA +AGGTAAGACAATATGATCAGATACCCATAGAAATTTGTGGAAAAAAGGCTATAGGTACAG +TATTAGTAGGACCTACCCCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGTT +GTACTTTAAATTTTCCAATAAGTCCTATTGAAACTGTACCAGTARCATTAAAGCCAGGAA +TGGATGGCCCAAAGGTTAAACAATGGCCATTAACAGAAGAGAAAATAAAAGCATTAACAG +AAATTTGTAGGGAAATGGAAAAGGAAGGAAAAATTTCGAAAATTGGGCCTGAAAATCCAT +ACAATACTCCAGTATTTGCGATAAAGAAAAAGGACAGCACTAAGTGGAGGAAATTAGTAG +ACTTCAGGGAGCTCAATAAAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCCC +ATCCAGCGGGTTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATT +TTTCAGTTCCTTTAGATGAAAGCTTCAGAAAGTATACTGCATTCACTATACCAAGTATAA +ACAATGAAACACCAGGGATCAGATACCAGTACAATGTACTTCCACAGGGATGGAAAGGAT +CACCAGCAATATTTCAGGCTAGCATGACAAAAATCTTAGAGCCCTTTAGATCAAAAAATC +CCGAAATAGTTATCTATCAATACATGGATGACTTGTATGTAGGCTCTGATTTAAAAATAG +GGCAACATAGAACAAAAATAGAGGAGTTAAGAGCTCATCTATTGAGCTGGGGATTTACTA +CACCAGACAAAAAGCATCAGAAAGAACCTCCATTTCTTTGGATGGGATATGAACTCCATC +CTGACAAATGGACAGTCCAGCCTATAATGCTGCCAGATAAAGACAGCTGGACTGTCAATG +ATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAG +TAAAGCAATTGTGTAAACTCCTCAGGGGAGCCAAAGCACTGACAGATATAGTGACACTGA +CTGAGGAAGCAGAATTAGAATTGGCAGAGAACAGAGAGATTCTAAAAGAACCTGTGCATG +GAGCATATTATGACCCATCAAAAGATCTAGTAGCAGAAATACAGAAACAAGGACAAGACC +AATGGACATATCAAATTTATCAGGAGCCATTTAAGAATCTAAAAACAGGAAAATATGCAA +AAAAGGGGTCTGCTCACACTAATGATGTAAAACAATTAACAGCAGTGGTGCAAAAGGTGG +CCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCATACAAAAAG +AAACATGGGAGGCATGGTGGATGGAGTACTGGCAGGCCACCTGGATTCCTGAATGGGAGT +TTGTCAATACCCCCCCTCTAGTAAAACTATGGTACCAGTTGGAGAAAGAACCCATAGTAG +GAGCAGAGACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAARATAGGAAAAGCAG +GGTATGTTACTGACAGAGGAAGACAAAAGGTTGTTTCTCTAACTGAGACAACAAATCAAA +AGACTGAATTACATGCAATCCATCTAGCTTTGCAGGATTCAGGATCAGAAGTAAATATAG +TAACAGACTCACAATATGCATTAGGAATTATTCAGGCACAACCAGACAGGAGTGAATCAR +AGATAGTCAATAAAATAATAGAGAAACTAATAGAAAAAGAAAAAGTCTACCTGTCATGGG +TACCAGCRCACAAGGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAA +TCAGGAGGGTGTTATTTTTAGARGGAATAGATMAGGCTCAAGAGGAACATGAAAAATATC +ACAGCAATTGGAAAGCAATGGCTAGTGATTTTAATCTGCCACCTGTAGTAGCAAAGGAAA +TAGTAGCCAGCTGTGATAAATGTCAACTAAAAGGGGAAGCTATGCATGGACAGGTAGACT +GTAGTCCAGGGATATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATCATAGTAG +CAGTCCATGTAGCCAGKGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGG +AGACAGCATACTTTCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAGTACACACAG +ATAATGGCCCCAATTTCACCAGTAGTGCAGTTAAGGCTGCCTGTTGGKGGGCAAATATCC +ATCAGGAATTTGGRATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATA +AGGAATTAAAGAAAATCATAGGGCAGGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAG +TACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTG +CAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAAC +AAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCAATTTGGA +AAGGACCAGCAAAGCTACTCTGGAAAGGTGAAGGGGCAGTGGTAATACAAGACAATAATG +ATATAAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGG +CAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTA +AAACATCATATGTATGTCTCAAAGAAAGCTAGAGAGTGGGTTTATAGACATCACTATGAA +AGCAGGAATCCAAGAGTAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGGCTAGTA +GTAAAAACATATTGGGGTCTGCAGGCAGGAGAAAAAGACTGGCACTTGGGTCATGGGGTC +TCCATAGAATGGAGACAGAAAATGTATAGCACACAAATAGACCCTGACCTGGCGGACCAA +CTAATTCATCTGTATTATTTTGACTGTTTTTCAGAATCTGCCATAAGGAAAGCCATAGTA +GGACACATAGTTAGCCCTAAGTGTAACTATCCAGCAGGACACAACAAGGTAGGATCACTA +CAATACTTGGCACTGAAAGCACTAGTAACACCAACAAGGGAAAGGCCACCTTTGCCTAGT +GTTAGGAAACTAACAGAGGATAGATGGAACAAGCCCCAGAAGACCAGGGGCCGCAGAGGG +AACCACACAATGAATGGATGTTAGAACTGTTAGAAGATATTAAGGTTGAAGCTGTCAGAC +ATTTTCCAAGACGGTGGCTACATGGATTAGGACAACATATCTATAACACCTATGGGGATA +CTTGGGAAGGGGTTGAAGCTATAATAAGAACTTTGCAACAACTACTGTTTGTTCATTTCA +GAATTGGGTGCCAACATAGCAGAATAGGCATTGTGCAAAGGAGAAGAGGCAGAAATGGAT +CCAGTAGATCCTAACCTAGAGCCCTGGAATCATCCAGGAAGTCAGCCTAAAACTGCTTGT +AGCAATTGTTACTGTAAAAGGTGTTGCTGGCATTGCCAAATTTGCTTTCTAAAAAAAGGC +TTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACACAGACGCGGAACTCCTCACAGCAGT +AAGGATCATCAAACTCCTATATCAAAGCAGTAAGTAGTAAATAAATGTAATGACACCTTT +AGAAATCTATGCAATAGTAGCATTAGTAATAGTGTTTGTCATAGCAGTAGTTGTGTGGAC +TATAGTAGGCATAGAATATAGGAAATTGCTAAAACAAAGAAAAATAGACAGATTAATTAA +GAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGCGAGGGGGATGAAGAGGAATT +ATCAACACTTATGGAGGTGGGGGACTATGTTCCTTTGGATGATAATAATGTGTAAGGCTG +CAGAAAACTTGTGGGTCACGGTATACTATGGGGTACCTGTGTGGAGAGATGCAGAGACCA +CCCTATTCTGTGCATCGGATGCTAAAGCATATGATAAAGAAGTACACAATGTCTGGGCCA +CACATGCCTGTGTACCCACAGACCCTAACCCGCAAGAAATAATTTTGGAAAATGTGACAG +AAGAATTTAACATGTGGAAAAATAACATGGTAGAACAAATGCAAACAGATATAATCAGTC +TCTGGGACCAAAGCCTAAAGCCATGTGTACAGTTAACCCCTCTCTGCGTTACTTTAAATT +GTACTGAACCCATCAGCACTAACTCTAACAACAGTATCTTTAACTCTAACAACAGTATCT +TTAACAACAGTAGCGTTAACAGCAATAATAGCATGGTAGGAGAAATAAAAAACTGCTCTT +TCAACATGACCACAGAACTAAGAGATAAAAGGAAAACTGTACATTCACTTTTTTATAAAC +TTGATATAGTACCAATTGATAATGATAATAATAATAGTAGTCAGTATAGACTAATAAATT +GTAATACATCAACCGTGACACAGGCCTGTCCTAAGGTAAACTTTGAGCCAATTCCTATAC +ATTATTGTACCCCAGCTGGTTTTGCGATTCTAAAGTGCAGGGATCCAAACTTTACGGGAA +AAGGGCCATGCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAGGCCAGTAGTAT +CAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAAGTAATGATTAGATCTGAAA +ATATTACAGACAATGGCAAGACCATAATAGTACAGCTTACTGAGCCTGTAAACATCACTT +GTATCAGACCTGGCAACAATACAAGAACAAGTATACGTATAGGACCAGGACAAACCTTCT +ATGCAACAGGTGATGTAATAGGGGACCCAAGAAAAGCACACTGTGAAGTCAACAAAACAG +CATGGAATAACACTTTACAAAAGATAAGTATGCAATTAAGAAAATACTTTAATAACAAAA +CAATAATCTTTAAGAAATCCTCAGGAGGGGATTTAGAAGTTACAACACATAGTTTCAATT +GTGGAGGAGAATTTTTCTATTGCGATACAACAGCCCTGTTCAATAGCACTTGGGAAAATG +GCACTGTTATAAATAGCACACAGGCCAATGAGACTATAACTCTACCATGCAGAATAAAGC +AAATTATAAATATGTGGCAGAGAGTAGGACGAGCAATGTATGCCCCTCCTATCAGAGGAA +TTATAAGGTGTGAATCAAACATTACAGGACTACTACTAACAAGAGATGGTGGAGGTGGAA +ATAATAGCAGCAATGAGACCTTCAGACCTATAGGAGGAAATATGGAGGACAATTGGAGAA +GTGAACTATATAAGTATAAAGTAGTAGAAATTGAACCAATAGGAGTAGCACCTACCAAGG +CAAAGAGAAGAGTGGTGGAGAGGGAAAAAAGAGCAATTGGACTGGGAGCTGCCTTCCTTG +GGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCACTAACGCTGACGGTACAGG +CCAGACAATTATTGTCTGGCATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGG +CTCAGCAGCATCTGCTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCC +TGGCTGTGGAAAGATACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTGGAA +AACTCATCTGCACCACTACTGTGCCCTGGAACTCTAGTTGGAGTAATAAATCTCAGGATG +AGATATGGGAGAACATGACCTGGATGCAATGGGACAAGGAAATTATCAATTACACAAACA +AAATATATGATCTAATTGAAAAATCGCAAAACCAGCAGGAAAAGAATGAACAAGATTTAT +TAGCATTGGATAAGTGGGAAGGTCTGTGGAGTTGGTTTAGCATATCAAATTGGTTATGGT +ATATAAGAATATTTATAATAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTGCTG +TGCTTTCTATAATAAATAGAGCCAGGCAGGGATACTCACCCTTGTCATTGGACACCCTTA +CCCCACACCCAGAGGGACCAGACAGGCCCGGAGAAATCAAAGAAGAAGGTGGAGAGCAAG +GCAGAGACAGATCGATTCGATTAGTGAGCGGATTCTTAGCACTTGCCTGGGACGATCTGA +GGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGAGACTTCATCTCGATTGCAGCGAGGA +CTGTGGAACTTCTGGGACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGGGCCTCA +AATATCTGGGGAATCTTCTGGGATATTGGGGTCAGGAACTAAAGAGTAGTGCTATTAATC +TGGTAGATACCATAGCAATAGTAGTAGCTGGGTGGACAGATAGGGTTTTGGAAATAGGAC +AAAGATTTTGTAGAGCTATTTGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAAAGG +CTTTGCAATAACATGGGGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGATT +AGGGAAAGAATAAGACGAGCTCCTGCTCCAGCTCCTGCTCCAGCACCAACAGGAGTAGGA +CCAGTRTCTCGAGATTTGGATAAACATGGAGCAGTCACAAGCAGTAATACAGCAGCTACT +AATGCTGATTGCGCCTGGCTGGAGGCGCAAGAGGAAGAGGARGTAGGCTTTCCAGTCAAG +CCGCAGGTACCTTTGAGACCRATGACATATAAGGGAGCTTTCGATYTCAGCCACTTTTTA +AAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAGAAAAGACAAGAAATCCTTGAT +YTGTGGGTYTATCACACCCAAGGCTACTTCCCTGATTGGCAGAATTATACCCCAGGGCCA +GGGGTTAGATACCCMCTAACATTTGGGGGGTGYTCCAAGCTAGTACCAGTTGACCCAGAT +GAAGTAGAAGCAGCCCCAGAGGGAGAGAACAACTGCCTTTTACCCCCTATATGCCAGCCC +GGAATGGATGATGAGGAGAAAGAAGTGTTAATGTGGAAGTTTGACAGTCCCCTGGCTTTA +AAACCCAGAGCCCGAGARCTGCATCCGGAGTTTTACAAAGACTGCTGACACAGACTGCTG +ACATGAAGTTGCTGACAGGGACTTTCCGCAGGGACTTTCCAGGGGGGTGTGGTTTGGGCG +GAGTTGGGGAGTGGCTAACCCTCAGATGCTG +>C.MW.2009.0.DEMC09MW009.KP109526 KP109526 +CCGAACAGGGACCTGAAAGCGAAAGTAAGACCAGAGAAGATCTCTCGACGCAGGACTCGG +CTTGCTGAAAGTGCACTCGGCAAGAGGCGAGAGCGGCGGCTGGTGAGTACGCCAAATTTT +ATTTGACTAGCAGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAATATTAAGAGGG +GGAAAATTGGATAAATGGGAAAAAATTAGGTTAAGGCCAGGGGGAAAGAAACATTATATG +ATAAAACACATAGTATGGGCAAGCAGGGAGCTGGAAAGATTTGCACTTAACCCTGGCCTT +TTAGAGACAGCGGATGGCTGTAAACAAATAATAAAACAGCTACACCCAGCTCTTAAGACA +GGAACAGAGGAACTTAGATCATTATATAACACAGTAGCAACTCTCTACTGCGTACATGCA +GGGATAGAGGTACGAGACACCAAGGAAGCCTTAGACAAGATAGAGGAAGAACAAAATAAA +TGTCAGCAAAAAACACAGAAGGCACAAGCAGCTGACGAGAAAGTCAGTCAAAATTATCCA +ATAGTGCAGAATCTCCAAGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTGAAT +GCATGGGTGAAAGTGATAGAGGAAAAAGCTTTTAGCCCAGAGATAATACCCATGTTTTCA +GCATTATCAGAAGGGGCCACCCCACAAGATTTAAACACCATGTTAAATACAGTGGGGGGA +CATCAAGCAGCCATGCAAATGTTAAAGGATACTATCAATGAGGAGGCTGCAGAATGGGAT +AGGCTACATCCAGTCCATGCAGGGCCTATTGCACCAGGTCAAATGAGAGAACCAAGGGGA +AGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAAC +CCACCTATTCCAGTGGGAGACATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATA +GTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGGCCAAAGGAACCCTTT +AGAGACTATGTAGATCGGTTCTTTAAAACTCTAAGAGCTGAACAAGCTACACAAGAGGTA +AAAAATTGGATGACAGACACCTTGTTGGTCCAAAATGCGAACCCAGACTGTAAGACAATT +TTAAAAGCATTAGGACCAGGGGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTG +GGAGGACCTAGCCACAAAGCAAGGGTTTTGGCTGAGGCAATGAGTTTGGCAGGCAATACA +AACATAATGATGCAGAGAAGCAATTTTAAAGGATCTAAAAGAGTGGTTAAATGTTTCAAC +TGTGGCAAGGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAAGGCTGTTGG +AAATGTGGAAAGGAAGGACACCAAATGAAAGACTGTACTGAAAGACAGGCCAATTTTTTA +GGGAAAATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCATTCAGAACAGGCTAGAA +CCAACAGCCCCACCAGCAGAGAGCTTCAGATTCGAGGAGACAACCCCTGCTCCGAAACAG +GGACCGAAAGAAGGGGACTTAATTTCCCTCAAATCACTCTTTGGCAGCGACCCATTGTCA +CAATAAAAGTAGGGGGCCAGATAAAGGAGGCTCTCTTAGACACAGGAGCAGATGATACTG +TATTAGAAGAAATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAG +GTTTTATCAAAGTAAGACAGTATGATCAAATACTTATAGAAATTTGTGGAAAAAGGGCTA +TAGGTGCAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACTC +AGCTTGGATGCACACTAAATTTTCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAA +AGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAG +CTTTAACAGCCATTTGTGAAGAAATGGAGAGGGAAGGAAAAATTACAAAAATTGGGCCTG +AAAATCCATATAACACTCCAATATTTGCCATAAAAAAGAAAGACAGTACTAAGTGGAGAA +AATTAGTAGACTTCAGGGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAG +GAATACCACACCCAGCAGGGTTAAAAAAGAAAAAATCAGTGACAGTACTGGATGTGGGAG +ATGCATATTTTTCAGTCCCTTTAGATGAAGGTTTCAGGAAATATACTGCATTCACCATAC +CTAGTACAAACAATGAAACACCAGGGATAAGGTATCAATATAATGTGCTTCCACAGGGAT +GGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGGG +CAAGAAATCCAGAAATAGTTATCTATCAATATATGGATGACTTGTATGTAGGATCTGACT +TAGAAATAGGGCAACACAGAGCAAAAATAGAGGAGTTAAGGGAACATCTATTAAAATGGG +GATTTACCACACCAGACAAGAAGCATCAAAAGGAACCCCCATTTCTTTGGATGGGGTATG +AGCTCCATCCTGACAAATGGACAGTGCAGCCTATACAGCTGCCAGAAAAGGATAGCTGGA +CTGTCAATGATATACAGAAGTTGGTGGGAAAATTAAACTGGGCAAGTCAGATCTATGCAG +GAATTAAAGTAAAACAACTTTGTAAACTCCTTAGGGGAGCCAAAGCACTAACAGACATAA +TACCACTAACTGAAGAAGCAGAATTAGAATTAGCAGAGAATAGGGAAATACTAAGAGAAC +CAGTACATGGAGTATATTATGATCCATCAAAAGACTTAATAGCTGAAATACAGAAACAAG +GGCAGGGCCAATGGACATATCAAATTTATCAAGAACCATTCAAGAATCTGAAAACAGGGA +AGTATGCAAAAACAAGGACTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGC +AAAAAATATCCATGGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCA +TCCAAAAAGAAACATGGGAGACATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTG +AGTGGGAGTTTGTTAATACCCCTCCCCTAGTAAAATTATGGTACCAGCTGGAGAAAGACC +CCATAGCAGGGGCAGAAACTTTCTATGTAGATGGAGCAGCTAACAGAGAAACTAAACTAG +GGAAAGCAGGGTATGTTACTGACAAAGGAAGGCAGAAAATTATCTCTCTAACTGAAACAA +CAAATCAGAAGGCTGAGCTACAAGCAATTCAGCTAGCTTTACAGGATTCAGGATCAGAAG +TAAACATAGTAACAGACTCACAGTATGCATTAGGAATCATTCAAGCACAGCCAGATAGGA +GTGAATCAGAGTTAGTTAGCCAAATAATAGAGCAGTTAATAAACAAGGAAAGAATTTACC +TGTCATGGGTACCAGCACATAAAGGAATTGGAGGAAATGAACAAGTAGACAAATTAGTAA +GTAGTGGAATCAGGAAAGTGCTGTTTCTAGATGGAATAGATAAGGCTCAGGAAGAGCATG +AGAAGTATCACAGCAATTGGAGAGCAATGGCTAGTGAGTTTAATCTGCCACCCGTAGTAG +CAAAAGAAATAGTAGCTTGTTGTGATAAATGTCATCAAAAAGGGGAAGCCATACATGGAC +AAGTGGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTTA +TCCTGGTAGCAGTCCATGTAGCCAGTGGATACATAGAAGCAGAGGTTATCCCAGCAGAAA +CAGGACAAGAAACAGCATACTACATACTAAAATTAGCAGGAAGATGGCCAGTCAAAGTAA +TACATACAGACAATGGCAGTAATTTCACCAGTGCTGCAGTTAAGGCAGCCTGTTGGTGGG +CGGGTATCAAACAGGAATTTGGGATTCCCTACAATCCCCAAAGCCAAGGAGTAGTAGAAT +CCATGAATAAAGAATTAAAGAAAATCATAGGGCAAGTAAGAGATCAAGCTGAGCACCTTA +AAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAGAGGGGGGATTGGGG +GGTACAGTGCAGGGGAGAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAAT +TACAAAAACAAATTACAAAAGTTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACC +CTATTTGGAAAGGACCAGCCAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAG +ATAACAGTGACATAAAGGTAGTACCAAGGAGGAAAGTAAAAATTATTAAGGACTATGGAA +AACAAATGGCAGGTGCTGATTGTGTGGCAAGTAGACAGGATGAGAATCAGGACATGGAAT +AGTTTAGTAAAACACCATATGTATGTTTCAAGGAGAGCTAATGGATGGTTTTACAGACAT +CATTATGAAAGCAGACATCCAAAAGTAAGTTCAGAAGTACACATCCCATTAGGGGAGGCT +AGATTAGTAATAATAACATATTGGGGTTTGCAAACAGGAGAAAGAGAGTGGCATCTGGGT +CATGGAGTCTCCATAGAATGGAGATTGAGAAGATATAGCACACAAATAGACCCTGGCCTG +GCAGACCAACTAATTCATATGCATTATTTTGATTGTTTTGCAGACTCTGCCATAAGAAAA +GCCATATTAGGACATATAGTTAGACCTAGGTGTGACTATCAAGCAGGACATAATAAGGTA +GGATCTCTACAATACTTGGCACTGACAGCATTGATAAAACCAAAAAAGAGAAAGCCACCT +CTGCCTAGTGTTAGGAAATTAGTAGAGGATAGATGGAACAACCCCCAGAAAACCAGGGGC +CGCAGAGGGAACCATACAATGAATGGGCATTAGAGATTCTAGAAGAACTGAAGCAGGAAG +CTGTCAGACACTTTCCTAGACCATGGCTCCATGGCTTAGGACAATATATCTATGAAACCT +ATGGAGATACATGGGCTGGGGTTGAAGCTCTAATAAGAGTACTGCAACAATTACTGTTTG +TTCATTTCAGAATTGGGTGCCAGCATAGCAGAATAGGCATTTTGCAACAGAGGAGAGCAA +GAAATGGACCCAATAGATCCTAACCTAGAGCCCTGGAACCATCCAGGAAGTCAGCCTAAA +ACTGCTTGTAACGATTGCTATTGTAAGCACTGCTGCTACCATTGTTTAGTTTGCTTCCAG +ACAAAAGGCTTAGGCATTTACTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCT +CCGAGCAGTGAGGATCATCAAGATTCTGTATCAAAGCAGTAAGTACTCAATAGTAGATGT +AATGTTAGAGTTAATAGATTATAGATTAGCAGTAGGAGCATTAATAGTAGCATTAATCTT +AGCAATAATAGTGTGGACCATAGCATATATAGAATATAGGAAATTGGTAAGACAAAGAAA +AATAGACTGGTTAATTAAAAGAATTAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGTGA +TGGGGATACAGAAGAATTGTCAACAATGGTGGATATGGGGCATCTTGGGCTTTTGGATGC +TAATGATTTGTAATACGAAGGACAGGGACTTGTGGGTCACAGTCTACTATGGGGTGCCTG +TGTGGAAAGAAGCAAAAACTACCCTATTTTGTGCATCAGATGCTAAAGCATATGACAAAG +AAGTGCATAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAACCCACAAGAAA +TGCCTTTGGAAAATGTAACAGAAAACTTTAACATGTGGGAAAATGACATGGTAGATCAGA +TGCATGAGGATATAATCAGTCTATGGGATCAAAGCCTCAAGCCGTGTGTAGAGTTGACCC +CACTATGTGTCACTTTAAACTGTACTACCTACAATAATAACAGTGGGAACCTTAGGGAAG +ACATGGAAGGAAAAATACAAAACTGCTCTTTCAATGTAACCACAGAATTAAGAGATAAGA +AAAGTAAAGAATATGCACTTTTTTATAGAATTGATCTAGTACCACTTAATAGCTCTAGTA +ACTCTAATATAGTACCATCTAATAGCTCTAGTAACTCTAGTGAGTATAGTGAGTATAGAT +TAATAAATTGCAATACCTCAACCATAACACAAGCCTGTCCAAAGGTCTCTTTTGACCCAA +TTCCTATACATTATTGTGCTCCAGCTGGATATGCGATTCTAAAGTGTAATAATAAGACAT +TCAATGGAACAGGACCATGCAATAATGTCAGCACAGTACAATGTACACATGGAATTAAGC +CAGTGGTATCAACTCAGTTACTGTTAAATGGTAGTCTAGCAGAAGAAGAGATAATAATTA +GATCTAAAAATTTGTCAGACAATGCCCAAACAATAATAGTACATCTTAATAAATCTGTAG +AGATTAAGTGTATAAGACCCGGCAATAATACAAGGAAAAGTGTGAGGATAGGACCAGGAC +AAACATTCTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTA +GTGAAACTGATTGGAAAGAAACTTTACACAATGTTAGCAAAAAACTAAAAGAACACTTCA +ATAAAACAATAAAGTTTAGCTCATCCTCAGGAGGGGACCTAGAAATTACAACACATAGTT +TTAATTGTGGAGGAGAATTTTTCTATTGCAATACATCAGGACTGTTCAATGGCACATACA +ATAATACAAATAGTACAGAGGGTATAAATAAAACCATCACACTCCCATGCAGAATAAAAC +AAATTATAAACATGTGGCAGAAGGTAGGACGAGCAATGTATGCCCCGCCCATTGCAGGAA +ACATAATATGTAACTCAAGTATCACAGGACTACTATTGACACGTGATGGAGGAGTACATG +ACAATGAGAATGAGACGGAGACATTCAGACCTGGAGGAGGAGACATGAGGGACAATTGGA +GAAGTGAATTATATAAATATAAAGTGGTAGAAGTGGAGCCATTGGGAGTGGCACCCACTA +AGGCAAAAAGAAGAGTGGTGGAGAGAGAGAAAAGAGCAGTGGGAATAGGAGCTTTGTTCC +TTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTAC +AGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGGACAATCTGCTGAGAGCTATAG +AGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGTATTAAGCAACTCCAGGCAAGAA +TCCTGGCTATAGAAAGATACCTAAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTG +GAAAACTCATCTGCACCACTGCTGTGCCTTGGAATGATAGTTGGAGCAATAAAACTTATG +ATGAGATTTGGGAGAACATGACCTGGATGCAGTGGGATAGAGAAATTAGTAATTACACAT +ACACAATATACAGGTTGCTTGAAGACTCGCAAATCCAGCAGGAAAAAAATGAACAGGATT +TATTAGCATTGGACAGTTGGAAAAATCTGTGGAGTTGGTTTGGCATAACAAAATGGTTGT +GGTATATAAAAATATTTATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTG +CTGTACTATCCATAGTGAATAGAGTTAGGCAGGGATACTCACCTTTGTCGTTCCAGACCC +TCAGCCCGAACCCAGGGGGACCAGACAGGCTCGGAAGAATCGACGAAGAAGGTGGAGAGC +AAGACAGAAACAGATCTGTGCGCTTAGTGAACGGATTCTTAGCACTTGCCTGGGACGACC +TGCGGAGCCTGTGCCTCTTCAGCTACCGCCAATTGAGAGACTTCATATTGATTGCAGCGA +GAGCGGCGGAACTTCTGGGACGCAGCAGTCTCAGGGGACTACAGAGGGGGTGGGAAGCCC +TTAAATATCTGGGAAGTCTTGTGCAGTATTGGGGTCTGGAACTAAAAAGGAGTGCTATTA +GTCTGCTTGATACCATAGCAATAGCAGTAGCTGAAGGAACAGATAGAATTATAGAAGTAG +TACAGAGACTTTGTAGAGCTATCCTCAATATACCTAGAAGAATCAGACAGGGCTTTGAAA +CAGCTTTGCTATAAAATGGGGGGCAAGTGGTCAAAAAGCAGTCTAGTTGGATGGCCTGCT +GTCAGGGAAAGAATGAGACGTACACCAGTAGCAGAGAAAGTAGGAACAGCAGCAGAGGGA +GTAGGAACAGCGTCTCAAGACTTAGATAAGCATGGGGCACTTACAACCAGTAACACAGCC +AGCAACAATGCTGCTTGTGCCTGGCTGGAGGCACAAGAAGAGGGAGGGGGTGAAGAGGTT +GGCTTTCCAGTCAGACCTCAGGTGCCTCTAAGACCAATGACTTATAAAGCAGCATTCGAT +CTCGGCTTCTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTAATTTACTCCAAGAAAAGA +CAAGAAATCCTTGATTTGTGGGTCTATAACACACAAGGCTTCTTCCCTGATTGGCAAAAC +TACACACCAGGACCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTA +CCAGTTGACCCAAAGGAAGTCGAAGAGGCCAATGAAGGAGAGAACAACAGCCTGCTACAC +CCTATGAGCCTGCATGGAATGGAGGATGAAGAAGGAGAAGTATTAAGATGGAAGTTTGAC +AGCAGTCTCGCACGCAGACACCTAGCCCGCGAGCTACATCCGGAGTGGTACAAAGATTAA +TTGCTGACACAGACTGCTGACACAGCGGGACTTTCCGCTGGGACTTTCCACTGGGGCGTG +CCAGGAGGGGTGGTCTGGGCGGGACGGGGAGTGGCCAGCCCTCAGATGCTGCATATAAGC +AGCTGCTTTTCGCCTGTACTGGGTCTCTCTAGGTAGACCAGATCTGAGCCCGGGAGCTCT +CTGGCTATCTAGGGAACCC +>C.MW.2009.0.CH1064.PL.080409.A2.08.KY111994 KY111994 +GAGATCCCTCAGACCCTTTTGGTAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGG +ACTTGAAAGCGAAAGTAGAACCAGAGAAGATCTCTCGACGCAGGACTCGGCTTGCTGAAG +TGCACTCGGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAAAATTTTATTTGACTAG +CGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAAAGGCGGAAAATTAG +ATAAATGGGAAAAAATTAGGTTAAGGCCAGGGGGAAAGAAACATTATATGTTAAAACATT +TAATATGGGCAAGCAGAGAGCTGGAAAGATTTGCACTTAACCCTGGCCTTTTGGAAACAT +CAGAAGGCTGTAAGCAGATAATAAAACAGCTACAACCAGCTCTTCAGACAGGGACAGAGG +AACTTAGATCATTATTTAACACAGTAGCAGTTCTCTATTGTGTGCATCAAAATATAGAGG +TAAGAGACACCAAGGAAGCCTTAGACAAGATAGAGGAAGAACAAAAGAAATGTCAGCAAA +AAACACAGCAGGCACAAACGGCTGGCGGAACGGTCAGTCAAAATTATCCTATAGTGCAAA +ATCTTCAAGGGCAAATGGTACACCAGGCCATATCACCTAGAACTTTGAATGCATGGGTAA +AAGTAATAGAGGAGAAGGCCTTTAGCCCAGAGGTGATACCCATGTTTACAGCATTATCAG +AAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAG +CCATGCAAATGTTAAAGGATACCATCAATGAGGAGGCTGCAGAATGGGATAGATTACATC +CAGTACATGCAGGGCCTGTTGCACCAGGCCAAATGAGAGAACCAAGGGGAAGTGACATAG +CAGGAACTACTAGTACCCTTCAGGAACAAATAAATTGGATGACAGGTAACCCACCTATTC +CAGTGGGAGACATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGT +ATAGCCCTGTCAGTATTTTGGACATAAAACAAGGGCCAAAGGAACCTTTTAGAGACTATG +TAGACCGGTTCTTTAAATGTCTAAGAGCAGAACAGGCTTCACAAGATGTAAAAAATTGGA +TGACAGACACCTTGTTGGTCCAAAATGCAAACCCAGATTGTAGAAACATTCTAAAAGCAT +TGGGAACAGGGGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTG +GTCATAAAGCAAGAGTTTTGGCTGAGGCAATGAGCCATGTAACAAATGCAAATGCTGCTA +TAATGATGCAGAGAAACAATTTTAAGGGCCCAAAGAAAAACATTAAGTGTTTCAACTGTG +GCAAGGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAAGGCTGTTGGAAAT +GTGGAAGGGAAGGACACCAAATGAAAGACTGTACTGAAAGACAGGCTAATTTTTTAGGGA +AAATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCCTCCAGAGCAGACCAGAGCCAA +CAGCCCCACCAGCAGAGAGCTTCAGGTTCGAGGAGACAACCTCTGCTCTGAAGCAGGAGC +CGAAAGACAGGGAACCCTTAACTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCTC +AGTAAAAGTAGGGGGCCAGATAAGAGAGGCTCTCTTAGACACAGGAGCAGATGATACAGT +ATTAGAAGAAATAGATTTGCCAGGAAAATGGAAACCAAAAATGATAGGAGGAATTGGAGG +TTTTATCAAAGTAAGGCAGTATGATCAAATACTTATAGAAATTTGTGGAAAAAAGGCTAT +AGGTACAGTGTTAGTGGGACCTACACCTGTCAACATAATTGGCAGAAACATGTTGACTCA +GCTTGGATGCACACTAAATTTTCCAATTAGTCCCATTGAAACTGTACCAGTAAAATTGAA +ACCAGGAATGGATGGCCCAAAGGTTAAACAGTGGCCATTATCAGAAGAGAAAATAAAAGC +ATTAACAGCAATTTGTGACGAAATGGAGAAGGAAGGAAAAATTACAAAAATTGGGCCTGA +AAATCCATATAACACTCCAATATTTGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAA +ATTAGTAGATTTCAGAGAACTCAATAAAAGAACTCAAGACTTTTGGGAGGTTCAATTAGG +AATACCACACCCAGCAGGGTTAAAAAAGAAAAAATCAGTGACAGTACTGGATGTGGGGGA +TGCATATTTTTCAGTTCCTTTAGATGAAAACTTTAGGAAATATACTGCATTCACCATACC +TAGTAGAAACAATGAAACACCAGGGATTAGATATCAATATAATGTGCTGCCACAGGGATG +GAAAGGATCACCAGCAATATTCCAGCACAGCATGACAAAAATCTTAGAGCCCTTTAGAAC +AAAAAATCCAGAAATAATTATCTATCAATATATGGATGACTTGTATGTAGGGTCTGACCT +AGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTGAGATGGGG +ATTTACCACACCAGACAAGAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGA +ACTCCATCCTGACAAATGGACAGTACAGCCCATACAGCTGCCAGAAAAGGAAAGCTGGAC +TGTCAATGATATACAGAAGTTGGTGGGAAAATTAAACTGGGCAAGTCAGATTTACCCAGG +GATTAAAGTAAGGCAACTTTGCAAACTCCTTAGGGGGGCCAAAGCACTAACAGACATAGT +ACCACTAACTGAAGAAGCAGAATTAGAATTGGCAGAGAACAGGGAAATTCTAAAAGAACC +AGTACATGGGGTATATTATGACCCATCAAAAGACTTGATAGCTGAAATACAAAAACAGGG +TCATGATCAATGGACATATCAAATTTACCAAGAACCATTTAAAAATCTGAAAACAGGAAA +GTATGCAAAAATGAGGACTGCCCACACTAATGATGTCAAACAGTTAACAGAGGCAGTACA +AAAGATAGCCTTGGAAAGCATAGTGATATGGGGAAAGACTCCTAAATTTAGACTACCCAT +CCAAAAGGAAACATGGGAGACATGGTGGACAGATTATTGGCAAGCCACCTGGATTCCTGA +TTGGGAGTTTGTCAATACCCCTCCTCTAGTAAAATTATGGTACCAGCTAGAAAAAGAGCC +CATAGCAGGAGTAGAAACTTTCTATGTAGATGGAGCAGCTAATAGGGAAACTAAAATGGG +AAAAGCAGGGTATGTTACTGACAGAGGAAGGCAGAAAGTCATTACTCTAAATGAAACAAC +AAATCAGAAGACTGAATTACAAGCAATTCATCTAGCCTTGCAAGATTCAGGATCAGAAGT +AAACATAGTAACAGACTCACAGTATGCATTAGGAATCATCCAAGCACAACCAGATAAGAG +TGAATCAGAGTTAGTCAATCAAATAATAGAGCAGCTAATAAACAAGGAAAGGGTTTACCT +GTCATGGGTACCAGCACATAAGGGAATTGGAGGAAATGAACAAGTGGATAAATTAGTAAG +CAGTGGAATCAGGAAAGTGTTGTTTTTAGATGGAATAGATAAGGCTCAAGAAGAGCATGA +AAAATATCACAACAATTGGAGAGCAATGGCTAGTGATTTTAATCTGCCACCCATAGTAGC +AAAAGAAATAGTAGCTAGCTGTGATAAATGTCAGCAAAAAGGGGAAGCCATACATGGACA +AGTAGACTGTAGTCCAGGGATATGGCAATTAGACTGTACACATTTAGAAGGAAAAGTTAT +CCTAGTAGCAGTCCATGTAGCCAGTGGCTATATAGAAGCAGAGGTTATCCCAGCAGAAAC +AGGACAAGAAACAGCATACTATATATTAAAATTAGCAGGAAGATGGCCAGTCAAAGTAAT +ACATACAGACAATGGCAGTAATTTCACCAGTGCTGCAGTTAAGGCAGCCTGTTGGTGGGC +AGGTATCAACCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAGGGAGTAGTAGAATC +CATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTAAGAGATCAAGCTGAGCATCTTAA +AACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGG +GTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAGAGAATT +ACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGATCC +TATTTGGAAAGGACCAGCCAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGA +TAACAGTGACATAAAGGTAGTACCAAGGAGGAAAGTAAAAATCATTAAGGACTATGGAAA +ACAGATGGCAGGTGCTGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAATA +GTTTAGTAAAGCACCATATGTATGTTTCAAGGAGAGCTAGTGGGTGGTTTTACAGACATC +ATTTTGAAAGCAGACATCCAAAAACAAGTTCAGAAGTACATATACCATTAGGAGAAGCTA +GATTGATAATAAAAACATATTGGGGTTTGCAAACAGGAGAAAGAGACTGGCATTTGGGTC +ATGGAGTCTCCATAGAATGGAGACTGAGAAGATATAGCACACAAGTAGACCCTAGCCTGG +CAGACCAGCTAATTCATATTCATTATTTTGATTGTTTTGCAGAATCTGCCATAAGGAAAG +CCATATTAGGACACATAGTTAGTCCTAGGTGTGACTATCAAGCAGGACATAATAAGGTAG +GATCTCTACAATACTTGGCCCTGACAGCATTGATAAAACCAAAAAGGATAAAGCCACCTC +TGCCTAGTGTTAGCAAGTTAGTAGAGGATAGATGGAACAACCCCCAGAGGACCAGGGGCC +GCAGAGGGAACCATACAATGAATGGACACTAGAGCTTTTAGAAGAACTCAAGCAGGAAGC +TGTCAGACACTTTCCTAGAACGTGGCTCCATGGCTTGGGACAACACATCTATGAAACCTA +TGGGGATACTTGGATGGGAGTCCAAGCTATAATAAGAATTTTGCAACAACTACTGTTTGT +TCATTTCAGAATTGGGTGCCAGCACAGCAGAATAGGCATTATGCCACGTAGAAGAACAAG +AAATGGAACCAGTAGATCCTAAACTAGAGCCCTGGAACCATCCAGGAAGTCAGCCAAAAA +CCCCTTGTAATAATTGTTATTGTAAACACTGTAGCTACCATTGTTTAGTTTGCTTTCAGA +CAAAAGGCTTAGGCATTTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGCGCTCCTC +CGAGCAGTGAGGATCATCAAAATCCTCTATCAAAGCAGTAAGTAACCAATAGTAGATGTA +ATGTTTGATTTATATGCAAAAGTAGATTATAGACTAGGAGTAGGAGCATTGATAGTAGCA +CTAATCATAGCAATAATTGTGTGGACCATAGTATATATAGAATATAGGAAACTGTTAAGA +CAAAGGAAAATAGACTGGTTAATTAAAAGAATTAGGGAAAGAGCTGAAGATAGTGGCAAT +GAGAGTGATGGGGATACTGAAGAATTATCCACAATGGTGGATATGGGGCATCTTAGGCTT +TTGGATGCTAATGATTTGTAATGGGAAAGGAAACTTGTGGGTCACAGTCTATTATGGGGT +ACCAGTATGGAAAGAAGCAAAAACTACTCTGTTTTGTGCATCAGATGCCAAAGCATATGA +GAAAGAAGTGCATAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCCAGCCCACA +AGAATTGGTTTTGGAAAATGTAACAGAAAATTTTAACATGTGGAAAAATGATATGGTAGA +TCAGATGCATGAGGATATAATCAGTCTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTT +GACCCCACTCTGTGTCACTTTAAATTGTAGTAATGCTACTGTTGACAGTAGTAAAGTTTA +TGATACTAGGAGTAATGTTAATGTTACCAGTATCAATAATAACATAATGGGAGAAATGAA +AAATTGCTCTTTCAATACAACCACAGAAATAAGAGATAAGGTAAAGAAGGAATATGCACT +TTTTTATAGACCTGATGTAGTACCACTTGATGAAACAAGCAATACCAGTGAGTATAGATT +AATAAATTGTAATACCTCAGCCGTAACACAAGCCTGTCCAAAGGTCACTTTTGAACCAAT +TCCTATACATTATTGTGCTCCAGCTGGTTATGCGATTCTAAAGTGTAATAATAAGACATT +CAATGGAACAGGACCATGCAGTAATGTCAGCACAGTACAATGTACACATGGAATTAGGCC +AGTGGTATCAACCCAACTACTGTTAAATGGTAGTCTGGCAGAAAAAGAGATAGTAATTAG +ATCTGAAAACCTGACAAACAATGCCAAAATAATAATAGTCCATCTTAACACCTCTGTAGA +AATTGTGTGTACAAGGCCCGGCAATAATACAAGGAAAAGTGTGAGAATAGGACCAGGACA +AACATTCTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTAG +TGAAAAGCAATGGAATAACACTTTACAAGAGGTAGGTAAAGAATTGCAAAAACACTTCCC +TAATAAGACAATAAAGTATGAACGATCCGCAGGAGGAGACATGGAAATTGCAACACATAG +CTTTAATTGTGGAGGAGAATTTTTCTATTGCAATACATCAAATCTGTTTAATGGTACATA +CAATGGTACATACATAAGTACAAACAGTACTTCAAACATCACGCTTCAATGCAGAATAAA +ACAAATTATAAACATGTGGCAGGGGGTAGGAAGAGCAATGTATGCTCCTCCCATTGCAGG +AAACATAACATGTAAATCAAATATCACAGGGCTACTATTGACACGTGATGGAGGGACCAA +AAATAATAGCAACGAAACAGAGGAGACATTCAGGCCTGCAGGAGGAGATATGAGGGATAA +TTGGAGAAGTGAATTATATAAATATAAAGTAGTAGAAATTCAGCCATTAGGAATAGCACC +AACTGGTGCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAGCAGGACTAGGAGCTTT +GTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGAC +GGTACAGGCCAGACAATTGTTGTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAGGGC +TATAGAGGCGCAACAGCATATGTTGCAACTCACGGTCTGGGGCATCAAGCAGCTCCAGGC +AAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTAGGGATGTGGGGCTG +CTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAACACTAGTTGGAGTAATAAATC +TGAAAAGGATATTTGGGATAACATGACATGGATGCAGTGGGAGAGAGAAATTAGCAATTA +CACAGAGACAATATACATGTTGCTTGAAGACTCGCAACACCAGCAGGAAAGAAATGAAAA +AGATTTACTAGCATTGGACAGTTGGAACAGTCTGTGGAATTGGTTTAACATAACAAACTG +GCTGTGGTATATAAGAATATTCATGATGATAGTAGGGGGCTTGATAGGTTTAAGAATAAT +TTTTGCTGTGCTATCTATAGTGAATAGAGTCAGGCAGGGATACTCACCTTTGTCGTTGCA +GACCCTTACCCCAAACCCGAGGGAACCCGACAGGCTCGGAGGAATCGAAGAAGAAGGTGG +AGAGCAAGACAGAGACAGATCCATTCGATTAGTGAGCGGATTCTTGCCAATTGTCTGGGA +CGACCTGCGGAGCCTGTGCCTCTTCAGTTACCACCGATTGAGAGACTTTCTATTGCTGGC +AGCGAGAGTGGTGGAACTTCTGGGACGCAGCAGTCTCAGGGGACTGCAGAGGGGGTGGGA +AGTCCTTAAGTATCTGGGAAGTCTTGTGCAGTATTGGGGTCTGGAACTAAAAAAGAGTGC +TATTAGTCTTTTAGATACCATAGCAATAGCAGTAGCTGAAGGAACAGATAGGATTATAGA +AGTAATACAAAGATTTTGTAGAGCTATCCGCAACATACCTACAAGAATAAGACAAGGCCT +TGAAGCATCTTTGCTATAAAATGGGGAGCAAGTGGTCAAAAAGCAGTGTAGTTGGATGGC +CTGCTGTGAGAGAAAGAATAAGAAGAACTGAGCCAGCAGCAGAAGGGGTAGGAGCAGCAT +CTCGAGACTTAGAGGAACATGGGGCACTTACAACCAGTAACACAGTCAGCAACAATGCTG +CTTGTGCCTGGCTGGAGGCACAAGAGGAGGGAGAAGAAGTAGGCTTTCCAGTCAGACCTC +AGGTGCCTTTAAGACCAATGACTTATAAGGCAGCATTTGATCTCGGCTTCTTTTTAAAAG +AAAAGGGGGGACTGGAAGGGTTAATTTACTCTAAGCAAAGGCAAGACATCCTTGATTTGT +GGGTCTATAACACACAAGGTTTCTTCCCTGATTGGCAAAACTACACACCGGGACCAGGGG +TCAGATACCCACTGACCTTTGGGTGGTGCTTCAAGCTAGTGCCAGTCGACCCAAGGGAAG +TAGAAGAGGCCAATAAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCAGGGAA +TGGAGGATGAGCATGGAGAAGTATTAAGATGGAAGTTTGACAGTTCACTAGCACGGAGAC +ACATGGCCCGCGAGCTACATCCGGAGTATTACAAAGACTGCTGACACAGAAGGGACTTTC +CACTGGGACTTTCCACTGGGGCGTTCCAGGGGGAGTGGTCTGGGCGGGACTGGGAGTGGC +CAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTCTAGGTA +GACCAGATCTGAGCCTGGGAGCTCTCTGGCCTCCTAGAGAACCCACTGCTTGGGCCTCAA +TAAAGCTTGCCTTGAGTGTT +>C.ZA.2004.0.04ZASK168B1.AY878058 AY878058 +TCTGTTGTGTGACTCTGGTAATACTCTGGTAACTAGAGATCCCTCAGACCCTTGTTGGTT +GCGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGTAAAACCAG +AGGAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGTGCACTCGGCAAGAGGCGAGAGCG +GCGACTGGTGAGTACGCCGAATTTTATTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGG +TGCGAGAGCGTCAATATTAAGAGGGGAAAATTTGGATAAATGGGAGAAAATTAGGTTAAG +GCCAGGGGGGAAGAAACACTATATGTTAAAACACTTAGTTTGGGCAAGTAGGGAGCTGGA +AAAATTTGCACTTAACCCTGGCCTTTTAGAAACATCAGAAGGCTGTAAACAAATAATGCA +ACAGCTACAACCAGCTCTTCAGACAGGAACAGAGGAACTTAAATCATTATACAACACAGT +AGCAGTTCTCTATTGTGTACATAGAAAGATAGATGTAAAAGACACCAAGGAAGCCTTAGA +CAAGATAGAGGAAGAACAAAACAAAAGTCAGCAAAAAACACAGCAGGCAAAAGCGGCTGA +CGGAAAGGTCAGTCAAAATTATCCTATAGTGCAGAATCTCCAAGGGCAAATGGTACATCA +AGCCATATCACCTAGAACCTTGAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTTAG +CCCAGAGGTGATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAA +TACCATGTTAAATACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGATACCAT +CAATGACGAGGCTGCGGAATGGGATAGATTACATCCAGTACATGCGGGGCCTGTTGCACC +AGGCCAAATGAGAGAGCCAAGGGGAACTGACATAGCAGGAACTACTAGTACCCTTCAGGA +ACAAATAGCATGGATGACAAGTAATCCACCTATTCCAGTGGGAGAAATCTATAAAAGATG +GATAATTCTGGGGTTAAATAAAATAGTGAGAATGTATAGCCCTGTTAGCATTTTGGACAT +AAAACAAGGGCCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTTTAAAACTTTAAG +AGCTGAACAAGCTACACAAGAGGTAAAAGTTTGGATGACAGAAACCTTATTGGTCCAAAA +TGCGAACCCAGATTGTAAGACCATTTTAAGAGGATTAGGAGTAGGGGCTACATTAGAAGA +AATGATGACAGCATGTCAGGGAGTGGGAGGACCTAGCCACAAAGCAAGAGTGTTGGCTGA +GGCAATGAGCCAAGCAAACAATGCAAACATAATGATGCAGAGAAGCAATTTTAAAGGCCC +TAGAAGAGTTATTAAATGTTTCAACTGTGGCAAGGAAGGGCACATAGCCAAAAACTGCAG +GGCCCCTAGGAAAAAAGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGACTG +TACTGAAAGGCAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGGCCAGG +GAATTTTCTTCAGAACAGAACAGAGCCAACAGCCCCATTAGAGCCAACAGCCCCACCAGC +AGAGAGCTTCAAGTTCGAGGAGACAACCCCCACTCCGAAGCAGGGGCCGAAAGACAGGGA +ACCTTTAACTTCCCTCAAATCACTCTTTGGCAGCGACCCCTTGTCTCAATAAAAGTAGAG +GGCCAAATAAAGGAGGCTCTCTTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATA +AATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGATTTATCAAGGTA +AGACAATATGATCAGATATTAATAGAAATTTGTGGGAAAAAGGCTATAGGTACAGTATTA +GTAGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGATGCACA +CTAAATTTTCCAATTAGCCCCATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGAT +GGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAGAAAATAAAAGCATTAACAGCAATT +TGTGAAGACATGGAGAAGGAAGGAAAAATTACAAAAATCGGGCCTGAAAATCCATATAAC +ACTCCAGTATTTGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTC +AGGGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCA +GCAGGGTTAAAAAAGAAAAAATCAGTGACAGTACTAGATGTGGGGGATGCATATTTTTCA +GTGCCTTTAGATGAAGGCTTCAGGAAGTATACTGCATTCACCATACCTAGTATAAACAAT +GAAACACCAGGGATTAGATATCAATATAATGTGCTTCCACAGGGATGGAAAGGATCACCA +GCCATATTCCAAAGTAGCATGACAAAGATCTTAGAGCCCTTTAGAGCAAAAAATCCAGAA +ATAGTCATCTATCAATATATGGATGACCTGTATGTAGGATCTGACTTAGAAATGGGCAAC +ATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTAAAATGGGGATTTACCACACCAG +ACAAGAAACATCAGAAGGAACCCCCATTTCTTTGGATGGGGTATGAACTTCATCCTGACA +AATGGACAGTACAGCCTATACAGTTGCCAGAAAAGGATAGCTGGACTGTCAATGATATAC +AGAAGTTAGTGGGAAAACTAAACTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGC +AACTTTGTAAACTCCTAAGGGGAGCCAAAGCACTAACAGATATAGTACCACTAACTGAAG +AAGCAGAGTTAGAGCTAGCAGAGAACAGGGAAATTCTAAAAGAACCAGTACATGGAGCAT +ATTATGACCCAGCAAAAGACTTAATAGCTGAAATACAGAGACAGGGGTATGACCAATGGA +CATATCAAATTTACCAAGAACCATTCAAAAACCTGAAAACAGGGAAATATGCAAAAATGA +GGACTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCTATGG +AAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCATCCAAAAAGAAACAT +GGGAGACATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTA +ATACCCCTCCCCTAGTAAAATTATGGTACCAGCTAGAGAAAGAACCCATAGCAGGAGCAG +AAACTTTCTATGTAGATGGAGCAGCTAATAGGGAAACCAAAATAGGAAAAGCAGGGTATG +TTACTGACAGAGGAAGGCAGAAAATTGTTACTCTAAGTGAAACAACAAATCAGAAGACTG +AATTACAAGCAATTCAGCTAGCTTTGCAAGATTCAGGATCAGAAGTAAACATAGTAACAG +ACTCACAGTATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAATTAG +TCAACCAAATAATAGAACAATTAATAAAAAAGGAAAGGGTCTACCTGTCATGGGTACCAG +CACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTAAGTAGTGGAATCAGGA +AAGTACTGTTTCTAGATGGAATAGATAAGGCTCAAGAAGAGCATGAAAAGTATCACAGCA +ATTGGAGAGCAATGGCTAGTGGGTTTAATCTGCCACCCATAGTAGCAAAAGAAATAGTAG +CCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATACATGGACAAGTAGACTGTAGTC +CAGGGATATGGCAACTAGATTGTACACACTTAGAAGGAAAAGTCATCCTGGTAGCAGTCC +ATGTAGCCAGTGGCTACATAGAGGCAGAGGTCATCCCAGCGGAAACAGGACAAGAAACAG +CATACTATATACTAAAATTAGCAGGAAGATGGCCAGTCAAGGTAATACATACAGACAATG +GCAGTAATTTCACTAGTGCTGCAGTTAAGGCAGCCTGTTGGTGGGCAGGTATCCAACAGG +AATTTGGGATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAAT +TAAAGAAAATCATAGGGCAGGTAAGAGATCAAGCTGAACACCTTAAGACAGCAGTACAAA +TGGCAGTATTCATTCACAATTTTAAAAGAAGAGGGGGGATTGGGGGGTACAGTGCAGGGG +AAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACGAATTA +CACAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCTATTTGGAAAGGAC +CAGCCAAACTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGACAACAGTGACATAA +AAGTAGTACCAAGGAGGAAGGTAAAAATCATTAAGGACTATGGAAAACAGATGGCAGGTG +CTGATTGTGTGGCAGGTAGACAGGATGAAGATTAGAACATGGAATAGTTTAGTAAAGCAC +CATATGTATGTTTCAAGGAGAGCTAATGGATGGTTTTACAGACATCATTATGAAAGCAGA +CATCCAAAAGTAAGTTCAGAAGTACACATACCATTAGGAGAGGCTAGATTAGTAATAAAA +ACATATTGGGGTTTGCAACCAGGAGAAAGAGCTTGGCATTTGGGTCATGGAGTCTCCATA +GAATGGAGATTGAGAAAATACAGCACACAAGTAGACCCTGGCCTGGCAGACCAGCTAATT +CATATGCACTATTTTGATTGTTTTGCAGAATCCGCCATAAGAAAAGCCATATTAGGACAC +ATAGTTACCCCTAGGTGTGATTATCAAGCAGGACATAACAAGGTAGGATCTCTACAATAC +TTAGCACTGACAGCATTGATAAAGCCAAAAAGGAGAAAGCCACCTCTGCCTAGTGTTAGA +AAATTAGTAGAGGATCGATGGAACAACCTCCAGAGGATCAGGGACCGCAGAGGGAACCAT +ACAATGAATGGACACTAGAGATTCTAGAAGAACTCAAGCAGGAAGCTGTCAGACACTTTC +CTAGACCATGGCTCCATAGCTTAGGGCAGCACATCTATGAAACCTATGGGGATACTTGGA +TAGGAGTTGAAGCAATAATAAGAATACTGCAACAATTACTGTTTATTCATTTCAGAATTG +GGTGCCGGCATAGCAGAATAGGAATCTTGCGACAAAGGAGAGCAAGAAATGGAGCCGGTA +GATCCTAACCTAGAGCCCTGGAACCATCCAGGAAGTCAGCCTAAAACTCCTTGTAATAAG +TGCTATTGTAAACAGTGTAGCTACCATTGTCTAGTTTGCTTTCAGACAAAAGGCTTAGGC +ATTTCCTATGGCAGGAAGAAGCGGAGACGGCGACGAAGCGCTCCTCCAAGCAGTGAGGAT +CATCAAAATCCTATATCAAAGCAGTAAGTATATGTAATGTTAGATTTAATAGGAAAAGTA +GGTTATAGAATAGGGGTAGGAGCATTAATAGTAGCATTAATTATAGCAATAGTTGTGTGG +ACCATAGTATATATAGAATATAGGAAATTGTTAAGACAAAAAAGGATAGACTGGTTAATT +AAAAGAATTAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGAGATAATGAGGAA +TTATCAACAATGGTGGACATGGGGCATCTTAGGCTGTTGGATGTTATTGACTTGTAGTGT +GGTGGGGAACTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAAAAGC +TACTCTATTTTGTGCATCAGATGCTAAGGCATATGAGAAAGAAGTGCATAATGTCTGGGC +CACACATGCCTGTGTACCCACAGACCCCAATCCACAAGAAATGGTTTTGAAAAATGTAAC +AGAAAATTTTAATATGTGGAAAAATGACATGGTGGATCAGATGCATGAGGATATAATCAG +TTTATGGGATCAAAGTTTAAAACCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAA +TTGTACAGATGATATTAAAAGTAATGTTACCTTCAATAACAGCATGATTGGAGAAATAAA +AAATTGCTCTTTCAATACAACCACAGAAATAAGAGATAAGAAACAGAAAGCGTATGCACT +ATTTTATAGAAGTGATGTAGTGCTACTTAATAAGGATAGCAATAGCAATAGCTCTGGTGA +GTACATATTAATAAATTGCAATTCCTCAACCATAACCCAAGCTTGTCCAAAGGTCTCTTT +TGACCCAATTCCTATACATTATTGTGCTCCAGCTGGTTATACGATTCTAAAGTGTAATAA +TAAGACATTCAATGGGACAGGACCATGCAATAATGTCAGTACAGTACAATGTACACATGG +AATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAGGGGAGAT +AATAATTAGGTCTGAAGATTTGACAAAAAATGCCAAAACAATAATAGTACACCTTAAGGA +ATCTGTAGGAATTATGTGTACAAGACCCAACAATAATACAAGAAAGAGTATAAGGATAGG +ACCAGGGCAAGCATTCTATGCAACAAATGGCATAATAGGAGACATAAAACAAGCACATTG +TAACATCAGTGGAGATGAATGGAACAAAACTTTAAAAGGGGTAAGGGAAAAATTAAAGGA +ACATTTCCCTAATAGAACAATAAAATTTGAACCATCCTCAGGAGGGGACCTAGAAATTAC +AACACATAGTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACAGCATTGTTTGA +TGAAAGTATTTTTAATAAAAGTGATTCAAACAGCACCATCACCCTCCCATGCAGAATAAA +GCAAATTATAAACATGTGGCGGAAAGTAGGACGAGCAATGTATGCCCCTCCCATTGAAGG +AAACATAACATGTAAATCAAATATCACGGGACTATTATTGGAACGTGATGGAGGAAAGGT +AAATAATAAAACCGAGATATTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGAAG +TGAATTATATAAATATAAAGTGGTAGAACTTAAGCCATTGGGAGTAGCACCCACTAAGGC +AAAAAGGATAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGACTAGGAGCTGTGTTCTTTGG +GTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGC +CAGACAATTGTTGTCTGGTATAGTGCAGCAGCAAAGCAATTTGCTGAGAGCTATAGAGGC +GCAACAGCATATGTTGCAACTCACGGTCTGGGGCATTAAGCAGCTCCAGGCAAGAGTCCT +GGCTATGGAAAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAA +ACTCATCTGCACCACTACTGTGCCTTGGAACTCCAGTTGGAGTAATAAATCTGAAGCAGA +GATTTGGAATCACACGACCTGGATGCAGTGGGATAGAGAAATCAATAATTACACAGAAAC +AATATACAAGTTGCTTGAAGTCTCGCGGAACCAGCAGGAGCAAAATGAAAAGGATTTATT +AGCACTGGACAAGTGGCAAAATCTGTGGAGTTGGTTTGACATAACAAATTGGCTGTGGTA +TATAAAAATATTTATAATGATAGTAGGAGGCTTGATAGGTTTGAGAATAATTTTTGCTGT +GCTTTCTATAGTGAAAAGAGTTAGGCAGGGATACTCACCTTTGTCGTTTCAGACCCTTAT +CCCAAACCCGAGGGGACCCGACAGGCTCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGA +CAGAAACAAATCCATTCGATTGGTGAACGGATTCTTATCACTTGTCTGGGACGACCTGCG +GAGCTTGTGCCTCTTCAGCTACCACCAATTGAGAAACTTCATATTGGTAACAGCGAGAGC +AGTGGAACTTCTGGGACGCAGCAGCCTCAGGGGACTACAGAGAGGGTGGGAAGCCCTTAA +GTATCTGGGAGGTCTTGTGCAATATGGGGGTCTGGAGCTAAAAAAGAGTGCTATTAGGCT +GCTTGATCGCATAGCAATAGCAGTAGCTGAAGGAACAGATAGGATTATTGAAACAATACA +AATAATCTGGAGAGCTGTCTGCAACATACCTAGAAGAATAAGACAGGGCTTGGAAGCAGC +TTTGCTATAAAATGGGAAGCAAGTGGTCAAAAAGCAGCATAGTTGGATGGCCTAGTGTAA +GAGAAAGAATAAGACAAACTGAGCCAGCGGCAGAGGGAGTAGGAGCAGCGTCTCAAGACT +TAGATAAATATGGGGCACTCACAAGCAGCAACACAGCCCAAAGTAATGCTAATTGTGCCT +GGCTACAAGCACAAGAGGAGGAAGGAGGAGTAGGCTTTCCAGTCAGACCTCAGGTGCCTT +TAAGACCAATGATGTATAAGGCAGCATTCGATCTCAGCTTCTTTTTAAAAGAAAAGGGGG +GACTGGAAGGGTTAATTTGGTCTAAGAAAAGACAAGAAATCCTTGATTTGTGGGTCTATC +ACACACAAGGCTACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATACC +CACTGACCTTTGGATGGTGTTTCAAGCTAGTGCCAGTTGACCCAAGTGAAGTAGAAGAGG +CCAACAAAGGAGAGAACAACTGTTTACTACACCCTATGAGCCAGCATGGAATGGAGGATG +AAGAAAGAGAAGTATTAAAGTGGCAGTTTGACAGCAGTCTAGCACGCAGACACCTGGCCC +GTGAGAAACATCCGGAGTGGTACAAAGACTGCTGACACAGAAGGGACTTTCCGCCTGGGA +CTTTCCACTGGGGCGTTCCAGGGGGTGTGGTCTGGGCGGGACTGGGGAGTGGTCAACCCT +CAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGGTAGACCAGA +TCTGAGCCTGGGAGCTCTCTGGCTATCTAGGGAACCCACTGCTTAAGCCTCAATA +>C.ZA.2000.0.1214MB.AY463236 AY463236 +AGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCATTCGT +GGTAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGTGAAAGTAAGA +CCAGAGGAAATCTCTCGACGCAGGACTCGGCTTGCTGAAGTGCACTCGGCAAGAGGCGAG +AGCGGCGGCTGGTGAGTACGCCAAAATTTATTTGACTAGCGGAGGCTAGAAGGAGAGAGA +TGGGTGCGAGAGCGTCAATACTAAGAGGGGGGAAATTAGATACATGGGAAAAAATCAGGT +TAAGGCCAGGGGGAAAGAAACGTTACAGGCTAAAACACCTAGTATGGGCAAGCAGGGAGC +TGGAAAGATTTGCACTTAACCCTGGCCTTTTAGAGACAGCAGACGGCTGTAAACAAATAA +TACAACAGCTACAACCAGCTCTTCAGACAGGAACAGAGGAACTTAAATCATTATTTAACA +CAGTAGCAACTCTCTATTGTGTACATGCAAAGATAGAGGTAAAAGGCACCAAGGAAGCCT +TAGACAAGATAGAGAAAGAACAACGCAAAAGTCAGCAAAAAACACAGCAAGCGGAAGCGG +CTGACAGAGGACAGAGTAGTCAAAATTATCCTATAGTGCAGAATCTCCAAGGGCAAATGG +TACACCAGGCCATATCACCAAGAACTTTGAATGCATGGGTAAAAGTGATAGAAGAGAAGG +CTTTCAGCCCAGAGGTAATACCCATGTTTACGGCATTATCAGAAGGAGCTACCTCACAAG +ATTTAAACACCATGTTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAG +ATACCATCAATGAGGAGGCTGCAGAATGGGATAGGTTACATCCAGTACATGCAGGGCCTA +TTGCACCAGGCCAAATGAGAGAACCAAGGGGAGGTGACATAGCAGGAACTACTAGTACCC +TTCAGGAACAAATAGCATGGATGACAAGTAACCCACCTATTCCAGTAGGAGACATCTATA +AAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGTCCTGTCAGCATTT +TGGACATAAAACAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTTTAAAA +CTTTAAGAGCTGAACAATCCACACAAGAGGTAAAAAATTGGATGACAGACACCTTGTTGG +TCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAGAGCATTAGGACCAGCGGCTTCAT +TAGAAGAAATGATGACAGCATGCCAAGGAGTGGGAGGACCTAGCCACAAAGCAAGAGTTT +TAGCTGAGGCAATGAGCCAAGCAGGCAATACAAATATAATGATGCAGAGAGGCAACTTTA +AAGGCCCTAGAAGAATTATCAAATGTTTCAACTGTGGCAAGGAAGGGCACATAGCCAGAA +ATTGCAAGGCCCCTAGGAAAAAAGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGA +AAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAAGGGAAGGC +CAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGT +TCGAGGAGACAACCCCTGCTCCGAAGCAGGAGCAGAAAGACAAGGAGCCACCCTTAGCTT +CCCTCAAATCACTCTTTGGCAACGACCCCTTGTCTCAATAAAAGTAGGGGGTCAGACAAA +GGAAGCCCTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGG +AAAATGGAAACCAAAAGTGATAGGAGGAATTGGAGGTTTTATCAAAGTAAGGCAGTATGA +TCAAATAGTTATAGAAATTTGTGGAAAAAAGGCTATAGGTTCAGTATTAGTGGGACCTAC +ACCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGATGCACACTAAATTTTCC +AATTAGTCCCATTGAAACTGTACCAGTGAAATTAAAGCCAGGAATGGATGGCCCAAAAGT +TAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGCAATTTGCGAAGAAAT +GGAGAAGGAAGGAAAAATTACAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATT +TGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAA +TAAAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCACACCCAGCAGGGTTAAA +ACAGAAAAAATCAGTGACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGA +TGAGAATTTCAGGAAGTACACTGCATTCACCATACCTAGTATAAACAATGAAACACCAGG +AATTAGATATCAATATAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTCCA +AAGTAGCATGACAAAAATCTTAGAGCCCTTTAGGACAAGAAACCCAGACATAGTTATCTA +TCAATATATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAA +AATAGAGGAGTTAAGAGAACATTTATTGAAATGGGGACTCACCACTCCAGACAAGAAACA +TCAAAAAGAGCCCCCATTTCTGTGGATGGGGTATGAACTCCATCCTGATAAGTGGACAGT +ACAGCCTATACATCTGCCAGAAAAAGAGAGCTGGACTGTCAATGATATACAGAAGTTAGT +GGGAAAATTAAACTGGGCGAGTCAGATTTACGCAGGGATTAAAGTAAAACAACTATGTAA +GCTCATTAGAGGAACCAAAGCACTAACAGACATAGTACCACTGACTGAAGAGGCAGAATT +AGAATTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGATCC +ATCAAAAGACTTAATAGCTGAACTACAGAAACAGGGACATGACCAGTGGACATATCAAAT +TTACCAAGAACCATTTAAAAATCTGAAAACAGGGAAGTATGCAAGAATGAGGACTGCCCA +CACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAGATAACTATGGAAAGTATAGT +AATATGGGGAAAGACTCCTAAATTTAGACTACCCATCCAAAAAGACACATGGGAGACATG +GTGGACAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCC +CCTAGTAAAACTATGGTACCAGCTAGAGAAGGAACCCATAGCAGGAGCAGAAACTTTCTA +TGTAGATGGAGCAGCTAATAGGGATACTAAAATAGGAAAAGCAGGGTATGTTACTGACAG +AGGAAGACAGAAAATTGTTCCTCTAACTGAAACAACAAATCAGAAGACTGAACTGCAAGC +AATTCAGATAGCTTTGCAGGATTCAGGACCAGAAGTAAACATAGTAACAGATTCACAGTA +TGCATTAGGCATCATTCACGGACTACCAGATAAGAGTGAATCAGAGTTAGTTAATCAAAT +AATAGAACAATTGATAAACAAGGAAAGAGTCTACCTGTCATGGGTACCAGCACATAAAGG +AATTGGAGGAAATGAGCAAGTAGACAAATTAGTAAGTAGGGGAATTAGAAAAGTGCTGTT +TCTAGATGGGATAGATAAGGCTCAAGAAGACCATGAAAAACATCACAGCAATTGGAGAGC +AATGGCTAATGAGTTTAATCTGCCACCCATAGTAGCAAAAGAAATAGTAGCTAGCTGTGA +TAAATGTCAGATAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGGATATG +GCAATTAGATTGTACACATTTAGAAGGAAAAGTCATTCTGGTAGCAGTCCATGTAGCCAG +TGGCTACATAGAAGCAGAGGTATTCCAGCAGAAACAGGACAAGAAACAGCATACTATATA +CTAAAATTAGCAGGAAGATGGCCAGTCAAAGTAATACACACAGACAATGGCAGTAATTTC +ACCAGTACTGCAGTAAAGGCAGCTCTGTTGGTGGGCAGGTATCCAACAGGAATTTGGGAT +TCCCTACAATCCCCAAAGTCAGGGAGTGGTAGAATCCATGAATAAAGAATTGAAGAAAAT +CATAGGGCAAGTAAGAGATCAAGCTGAGCACCTTAAGACAGCAGTACAAATGGCAGTATT +CATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAAT +AGACATGATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATCATAAAAATTCA +AAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCTATTTGGAAAGGACCAGCCAAACT +ACTCTGGAAAGGTGAAGGGGCAGTAGTTATACAAGATAGCAGTGACATAAAGGTGGTACC +AAGGAGGAAAGTAAAAATCATTAAGGACTATGGAAAACAGATGGCAGGTGCTGATTGTGT +GGCAAGTAGACAGGATGAAGATTAGAACATGGAATAGTTTAGTAAAGCACCATATGTATA +TTTCAAGGAAAGCTAAGGGATGGTTTTACAGACATCATTATGAAAGCAGGCATCCAAAAG +TAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAGATTAGTAATAAAAACATATTGGG +GTTTGCAGACAGGAGAAAGAGAGTGGCATTTGGGTCATGGAGTCTCCATAGAATGGAGAT +GGAAAAGATATAGCACACAGGTAGACCCTGGCCTGGCAGACCAACTAATTCATATGCATT +ATTTTGATTGTTTTGCAGACTCTGCCATAAGACAAGCCATCTTAGGACATATAGTTAGCC +CTAGGTGTAACTATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTGA +CAGCATTGATCAAGCCAAAAAAGATAAAGCCACCTCTGCCTAGTGTTCAGAAATTGGTAG +AGGATAGATGGAACAAGCCCCAGAAGACCAGGGGCCGCAGAGGGAACCATACAATGAATG +GGCACTAGAGCTTTTAGAAGATCTTAAGCAGGAAGCTGTCAGACACTTTCCTAGACCATG +GCTCCATAGCTTAGGACAGCACATCTATGAAACCTATGGGGATACTTGGACGGGAGTCGA +AGTGATAATAAGAATTCTGCAACAATTACTGTTTATTCATTTCAGAATTGGGTGCCAGCA +TAGCAGAATAGGCATTTTGCGACAAAGAAGAGCAAGAAATGGAGCCAATAGATCCTAAAC +TAGAACCCTGGAAACATCCAGGGAGTCAGCCTAAAACTGCTTGCAATAGGTGTTATTGCA +AACGCTGCTGCTATCATTGTCTAGTTTGCTTTCAGACAAAAGGCTTAGGCATTTCCTATG +GCAGGAAGAAGCGGAGACAGCGACGAAGCGCTCCTCCAAGCAGTGAAGATCATCAAGATC +CTATACCAAAGCAGTAAGTACTAAATGGTAGATGTAATGTTAAATTTACTAGCAAGAGTA +GATTATAGATTAGGAGTAGGAGCATTGATAGTAGCACTAATTATAGCAATAGTTGTGTGG +ATCATAGCATATATAGAATATAAGAAACTGGTAAGGCAGAGAAGAATAGACAAGCTAGTT +GAAAGAATTAGGGAAAGAGAAGAAGACAGTGGCAATGAGAGTGATGGGGATGTTGAGGAA +TTGTCAACAATGGTGGATATGGAGCATCTTAGGCTTATGGATGTTAATAATTTGTAATGG +GGACAATTTGTGGGTCACTGTCTACTATGGGGTACCTGTGTGGAAAGAAGCACAAACTAC +TCTATTTTGTGCATCAGATGCTAAAGGATATGAAAAAGAAGTGCATAATGTCTGGGCTAC +ACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAATGGTTTTGGCAAATGTAACAGA +AAATTTTAATATGTGGAAAAATGACATGGTAGATCAGATGCATGAGGATATAATCAGTTT +ATGGGATCAAAGCTTAAAGCCATGTGTAAAGTTGACCCCACTCTGCGTCACTTTAAACTG +TACTAATGTCACCTGTACTGATAACAGCACCTGTAAGGGTAACACAAGTGAAATAAAAAA +TTGCTCTTTCGACACAACCTCAGAAATGGAAGATAAGAAGAAAAGACAGAATGCACTTTT +CTATGCACTTGATATAGTCCCACTTAATAACAATAGTAGTGAATATAGAATAATAAGTTG +TAATACCTCAACCATAGCACAAGCCTGTCCAAAGATCTCTTTTGACCCAATTCCTATACA +TTATTGTGCTCCAGCTGGTTATGCGATTCTAAAGTGTAATAATAAGACATTCAATGGAAC +AGGACCATGCAATAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTGGTATC +AACTCAGCTACTGTTAAATGGCAGCCTAGCAGAAGAAGAGATAATAATTAGATCTGAAAA +TATTACAGACAATGTCAAAACAATAATAGTACACCTTAAGGATGCTGTAGAAATTGTGTG +TATAAGACCCGGCAATAATACAAGAACCAGTGTGAGGATAGGCCCAGGACAGACATTCTA +TGCAACAGGAGACATAATAGGAGATATACGACAAGCACATTGTAACATTACTGAAAGCAA +GTGGAATAACACTTTAAAAAAGGTAACAGGAAAATTAGGAGAATACTTCCCTAATCGAAC +AATACAATTTGCACCATCCTCAGGAGGAGATTTAGAAATTACAACACATAGCTTTAATTG +TGGAGGAGAATTTTTCTATTGCGATACAGCAGCCCTGTTTAATGGCACATATAATGGCAC +ATATGGTAATGAGACTTCAAACATCACACTCCAATGCAGAATAAAACAGATGATAAACAT +GTGGCAGGGGGTAGGACGAGCAATGTATGCTCCTCCCATTGCAGGAAACATAACATGTAG +ATCGAATATCACAGGACTACTATTGACACGTGATGGAAGTAACGATACTGGGCCAGAGAT +ATTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAA +AGTGGTAGAAATTAAGCCATTAGGAATAGCACCCACTAAAGCAAAAAGGAGAGTGGTGGA +GAGAGAGAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTAGGAGCAGCAGG +AAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGG +TATAGTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCGCAACAGCATATGTTGCA +ACTCACAGTCTGGGGCATTAAACAGCTCCAAGCAAGAGTCCTGGCTATAGAAAGATACCT +AAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACCAC +TGTATCTTGGAACTCCAGTTGGAGTAATAAAACTTACGATGAAATTTGGGAAAACATGAC +CTGGATGCAGTGGGAGAGAGAAATCAGTAATTACACAAACACAATATATAGGTTGCTTGA +AGACTCGCAAAACCAGCAGGAAAAAAATGAACAAGATTTACTAGCATTGGACAGTTGGGC +AAGTCTGTGGAATTGGTTTAGCATAACAAAATGGCTGTGGTATATAAAAATATTCATAAT +GATAGTAGGAGGCTTGATAGGTTTAAGAATAATTTTTGCTATACTCTCTATAGTAAATAG +AGTTAGGCAGGGATACTCACCTTTGTCGTTTCAGACCCTTACCCCAAACCCGAGGGAACT +CGACAGGCCCGAAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGACAGATCCATACG +ATTAGTGAGCGGATTCTTGTCACTTGCCTGGGACGATCTGCGGAGCCTGAGCCTCTTCAG +CTACCGCCAATTGAGAGACTTCATATTGGTGATAGTGAGAGTAGTGGAACTTCTGGGACG +CAGCAGTCTCAGGGGACTACAGAAGGGGTGGGAAACCCTTAAGTATTTGGGAAGTCTTGT +ACAGTATTGGGGTTTAGAGTTAAAAAGGAGTGCTATTAGTCTGCTTGATACCATAGCAAT +AGTAGTAGCTGAGGGAACAGATAGGATTATAGAATTAATACAAAGAATTTGGAGAGCTAT +CTGCCACATACCTACAAGAATAAGACAGGGCTTTGAAGCAGCTTTGCAATAAAATGGGGG +GCAAGTGGTCAAAAAGCAGTATAGTTGGATGGCCTGCTGTAAGAGAAAGAGTCAGAAGAA +CTCAGACAGGAACAAGAATCAGAAGAACTCAGACAGCAGCAGAGGGAGTAGGAGCAGCAT +CTCAAGACCTAGATAAACATGGGGCACTTACAACCAGTAACACAGCCACTAACAATGCTG +CTTGTGCCTGGCTGGAAGCACAAGAGGAGGAAGAAGAAGTAGGTTTTCCAGTCAGACCTC +AGGTACCTCTAAGACCAATGACTTATAAGGCAGCAGTTGATCTCAGCTTCTTTTTAAAAG +AAAAGGGGGGACTGGAAGGGTTAATTTACTCCAAGAAAAGGCAAGATATCCTTGATTTAT +GGGTCTATAACACACAAGGTTTCTTCCCTGATTGGCAAAACTACACACCGGGACCAGGGG +TCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCTGTTGACCCAAGGGAAG +TAGAAGAGGCCAATGAAGGAGAAAACAACTGTTTGCTACACCCTATGAGCCAGCAGGGAA +TGGAGGATGATGACAGAGAAGTACTAATGTGGAAGTTTGACAGTCTCCTAGCACGCAGAC +ACATGGCCCGCGAGCTACATCCGGAGTATTACAAAGACTGCTGACACAGAAGGGACTTTC +CGCTGGGGCTTTCCACTGGGGCGTTCCGGGAGGTGTGGTCTGGGCGGGACTGGGGAGTGG +CCAGCCCTTGAATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTCTAGGT +AGACCAGATCTGAGCCTGGGAGCTCTCTGGCTATCTAGGGAACCCACTGCTTAAGCCTCA +ATAAAGCTTGCCTTGAGTGCTTA +>C.BR.2004.0.04BR021.AY727523 AY727523 +AAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACGCCTTT +CGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGTAAG +ACCAGAGGAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGTGCACTCGGCAAGAGGCGA +GAGCGGCGACTGGTGAGTACGCCATTTTTATTTGACTAGCGGAGGCTAGAAGGAGAGAGA +TGGGTGCGAGAGCGTCAGTATTAAGAGGCGAAAAGTTAGATAATTGGGAAAAAATTAAGT +TAAAGCCAGGGGGAAAGAAATGCTATATGATGAAACACCTAGTCTGGGCAAGCAGGGAGC +TGGAAAGATTTGCACTTGACCCTGGCCTTTTAGAGACATCAGAAGGCTGTAAACAAATAA +TAAGGCAGCTACAACCAGCTCTTCAGACAGGAACAAAGGAACTTATATCATTATATAACA +CAGTTGCAACTCTCTATTGTGTACATGCAAAGATAGAGATACGAGACACCAAGGAAGCCT +TAGACAAAATAAAGGAAGAACAAAACAAAAGTCAGCAAAAAACACAGCAGGCAGAAGCGG +CTGACAAAGGAAAGGTCAGTCAAAATTATCCTATAGTGCAGAATATCCAAGGGCAAATGG +TACACCAGCCCATATCAGCTAGAACTTTGAATGCATGGGTAAAGGTAATAGAAGAGAAGG +CTTTCAGCCCAGAGGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAG +ATTTAAACACCATGTTAAATACAGTGGGGGGACACCAAGCAGCCATGCAAATGTTAAAAG +ATACCATCAATGAAGAGGCTGCAGAATGGGATAGATTACATCCAGTGCATGCAGGGCCTG +TCGCACCAGGCCAACTGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACCAGTACCC +TTCAGGAACAAATAGCATGGATGACAAATACCCCACCTGTCCCAGTAGGAGACATCTATA +AAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTT +TGGACATAAAACAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTTTAAAT +GCTTAAGAGCAGAACAAGCTACTCAAGATGTAAAAAATTGGATGACAGATACCTTGTTGG +TCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAAGCATTAGGGACAGGGGCTACAT +TAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCACAAAGCAAGAGTGT +TGGCTGAGGCAATGAGCCAAGTAAACAATACAAACATAATGATGCAGAGAAGCAATTTTA +AGGGCCCTAAAAGAACTATCAAATGCTTCAACTGTGGTAAGGAAGGGCACTTAGCCAGAA +ATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGA +AAGACTGTACTGAGAGGCAGGCTAATTTTTTAGGGAGAATTTGGCCTTCCCACAAGGGGA +GGCCAGGAAATTTCCCCCAGAGCAGACTAGAGCCAACAGCCCCACCAGAAGAGAGCTTCA +GGTTCGAGGAGACAACCCCCTCTCCGAAGCAGGAGCCGAAAGACAGGGAACCCTTAACTT +CCCTCAAATCACTCTTTGGCAGCGACCCCTCGTTACAATAAAAGTAGGGGGACAGCTAAA +GGAGGCTCTTTTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAAATTGCCAGG +AAATTGGAAACCAAAAATGATAGGAGGAATTGGGGGTTTTATCAAAGTAAGACAGTATGA +TCAAATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTACTAGTAGGACCTAC +ACCTGTCAACATAATTGGAAGAAACATGTTGACTCAGCTTGGATGTACACTAAATTTTCC +AATCAGTCCCATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGGT +CAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGCAATTTGTGAAGAAAT +GGAAAAGGAAGGAAAAATTACAAAAATTGGTCCTGAAAATCCCTATAACACTCCAGTATT +TGCTATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAA +TAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGGATACCACACCCATCAGGGTTAAA +AAAGAAAAAATCAGTGACAGTACTGGATGTGGGGGATGCATATTTTTCAGTACCTTTAGA +TGAAAACTTTAGAAAATATACTGCATTTACCATACCTAGTATAAACAATGAAACACCAGG +GGTTAGATATCAATATAATGTGCTTCCACAGGGATGGAAAGGATCACCATCAATATTCCA +GAGTAGCATGACAAGAATCTTAGAGCCCTTTAGGGCACAAAATCCAGAAATAGTTATATA +TCAATATATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAA +AATAGAGGAGTTAAGAGAACATCTATTGAAGTGGGGATTCACCACACCAGACAAGAAACA +TCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGT +ACAGCCTATACAGCTGCCAGAAAAGGATAGCTGGACTGTCAATGATATACAGAAGTTAGT +GGGAAAATTAAACTGGGCAAGTCAGATTTACCCAGGAATTAAAGTAAGACAACTGTGTAA +ACTCCTTAGGGGAGCCAAAGCATTAACAGACATAGTACCACTGACTGAAGAAGCAGAATT +AGAATTGGCAGAGAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCC +ATCAAAAGACTTAATAGCTGAAATACAGAAACAGGGGCAGGACCAATGGACATATCAAAT +TTACCAAGAACCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGTACTGCCCA +CACTAATGATGTAAGACAGTTAACAGGGGCAGTGCAAAAAATAGCCCAGGAATGCATAGT +AATATGGGGAAAAACTCCTAAATTTAGATTACCCATCCAGAAAGAAACATGGGAGGCATG +GTGGACAGACTATTGGCAAGCCACATGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCC +CCTAGTAAAGTTATGGTACCAGCTGGAGAAAGAACCCATAGCAGGAGCAGAAACTTTCTA +TGTAGATGGAGCAGCTAATAGGGAAACTAAAATAGGAAAAGCAGGGTATGTTACTGACAG +AGGAAGGCAGAAAATTGTTCCTCTAACTGAAACAACAAATCAAAAGACTGAGTTACAAGC +AATTCAACTAGCTTTACAGGACTCAGGATCAGAAGTAAACATAGTAACAGACTCACAGTA +TGCATTAGGAATTATTCAAGCACAACCAGACAAGAGTGAGTCAGAATTAGTCAATCAAAT +AATAGAACAGTTAATAAAAAAGGAAAGGGTCTACCTGTCATGGGTACCAGCACACAAAGG +AATTGGGGGAAATGAACAAGTAGATAAATTAGTAAGTAATGGAATCAGGAAAGTGCTGTT +TCTAGATGGAATAGATAAAGCTCAAGAAGAGCATGAAAAATATCACAGCAATTGGAGAGC +AATGGCTAGTGAGTTTAATCTGCCCCCCGTAGTAGCAAAAGAAATAGTAGCTAGCTGTGA +TAAATGTCAGCTAAAAGGGGAAGCCATACATGGACAAGTAGACTGTAGTCCTGGAATATG +GCAATTAGATTGTACCCATTTAGAAGGAAAAATCATCCTGGTAGCAGTCCATGTGGCCAG +TGGATACATAGAAGCAGAGGTTATCCCAGCAGAAACAGGACAAGAAACAGCATACTTTAT +ACTCAAATTAGCAGGAAGATGGCCAGTCAAAATAATACATACAGACAATGGCAGTAATTT +CACCAGTAATACAGTTAAAGCAGCCTGTTGGTGGGCAGGTATCCAACAGGAATTTGGAAT +TCCCTACAATCCCCAAAGTCAGGGAGTAGTAGAATCAATGAATAAAGAGTTAAAGAAAAT +CATAGGACAAGTAAGAGATCAAGCTGAGCACCTTAAGACAGCAGTACAAATGGCAGTATT +CATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAAT +AGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCA +AAATTTTCGGGTTTATTACAGAGACAGCAGAGATCCTATTTGGAAAGGACCAGCCAAACT +ACTCTGGAAAGGTGAAGGGGCAGTAGTACTACAAGATAACAGTGACATAAAGGTAGTACC +AAGGAGGAAAGTAAAAATCATTAAGGACTATGGAAAACAGATGGCAGGTGCTGATTGTGT +GGCAAGTAGACAGGATGAAGATTAGAACATGGAATAGTTTAGTAAAGCACCACATGTATA +GGTCAAAGAGAGCTAGTGGATGGTATTATAGACATCATTATGAAAGCAGACATCCAAAAA +TAAGTTCAGAAGTACACATCCCATTAGGGGAGGCTAGATTAGTAATAACAACATATTGGG +GGTTGCAAACAGGAGAAAGAGATTGGCATTTGGGTCATGGAGTCTCCATAGAGTGGAGAC +TGAGAAAATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCATGTGCATT +ATTTTGATTGTTTTGCAGACTCTGCCATAAGGAAAGCCATATTAGGACATAGAGTTAGCC +CTAGGTGTGACTATCAAGCAGGACATAATAAGGTAGGATCTCTACAATACCTGGCACTGA +CAGCATTGATAAAACCAAAAAAGACAAAGCCACCTCTGCCTAGTGTTAGCAAATTAGTAG +AGGATAGATGGAACAAGCCCCAGAAGACCAGGGACCGCAGAGGGAACCATTCAATGAATG +GACACTAGAACTTTTAGAGGAACTAAAACGGGAAGCTGTCAGACACTTTCCTAGACCATG +GCTTCATAGCTTAGGACAATATATCTATGAAACCTATGGGGATACTTGGACGGGAGTGGG +AGCTATAATAAGAATTCTGCAACAACTACTGTTTGTCCATTTCAGAATTGGGTGCCAGCA +TAGCCGAATAGGCATTATAAGACAGAGAAGAGCAAGAAATGGAGCCAGTAGACCCTAACC +TAGAGCCCTGGAACCATCCAGGAAGTCAGCCTAAAACCCCTTGCAATAGGTGCTATTGTA +AAAGCTGCAGCTATCACTGTCAAGTTTGCTTTCTGACAAAAGGCTTAGGCATTTCCTATG +GCAGGAAGAAGCGGAGACAACGACGAAGCGCTCCTCCAAGCAGTGAGGATCATCAAAATC +TTATATCAAAGCAGTAAGTATTCAGTAGTAGATGCAAATATTCAGTAGTAGATGTAATGT +TAGAAGAAATAGATTATAGATTAGGAGTAGGAGCATTGATAGTAGCACTGATCATAGCAA +TAGTTGTGTGGATCATAGCTTATATAGAATATAGGAAATTGGTAAGACAAAGAAGAATAA +ACTGGTTAATTGAAAGAATTAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGTG +ATACAGAGGAATTGGAAACAATGGTGGATATGGGGAATCTTAGGCTTTTGGATGTTAATG +ATGTGTAATGTGATGGGGAACTTGTGGGTCACAGTATATTATGGGGTACCTGTGTGGAGA +GAAGCAAAAGCCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAAGTGCAC +AATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCCAATCCACAAGAAATGTTTTTG +GAAAATGTAACAGAAAATTTTAACATGTGGGACAATGACATGGTGGATCAGATGCATCAG +GATATAATCAGTTTATGGGATCAAAGCCTAAAACCATGTGTAAAGTTGACCCCACTCTGT +GTTACTTTAAACTGCACGAATGCGGAGGGTAACAGCACTACTACTAACAGAACTAGTAAC +AGCACTACTACTAACAGCACTAGTAGTAAAAATGATACCATGAGGGGAGAAATAAAAAAG +TGTTCTTTCAATATGACCACAGAACTAAAAGATAAGAGCAAAAAGGTACATGCACTTTTT +TATAGACTTGATATAGTACCAATTAATACTACGGAGAGTAATAGAACTTATGAGAATTAT +AGATTAATAAATTGTAATACCTCAACCATAGCACAAGCCTGTCCAAAGATCACTTTTGAC +CCAATTCCTATACATTATTGTGCTCCAGCGGGTTATGCGATTCTAAAGTGTAATGAGAAG +ACATTCAATGGAACAGGACCATGCAAAAATGTCAGTACAGTACAATGTACACATGGAATT +AAGCCAGTGGTATCAACTCAACTACTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAATA +ATTAGATCTAAAAATCTAACAGACAATGCTAAAACAATAATAGTACAACTTAAGGAACCT +GTAGAAATTACTTGTACAAGACCCAACAATAATACAAGAGAAAGTATAAGAATAGGACCA +GGACAAACATTCTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCATATTGTACC +CTTAATGAAACAACATGGAATAGAACTTTACAAGCAGTAGGAGAAAAATTAGCAGAGCAC +CTCAATAAAACAACAATAAAATTTGCAAACCACTCAGGAGGAGACTTAGAAGTTGTAACA +CATAGCTTTAATTGTGGAGGAGAATTTTTCTATTGTAATACAACAGGCCTGTTTAATGGT +ACATACATAAAAAATTCTAATGCAACAGGAAACATTACTAGAAACATCACAATCCCATGC +AGAATAAAACAAATTATAAACATGTGGCAGAAGGTAGGACGAGCAATGTATGCCCCTCCC +ATTCGAGGAATAATAACCTGTAGGTCAAATATCACAGGACTACTACTGACACGTGATGGA +GGAGAGAATGATACAGAGACAGTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGA +AGTGAATTATATAAATATAAAGTGGTAGAAATTAAACCATTAGGAATAGCACCCACTAAG +GCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTT +GGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAG +GCCAGACAATTGTTGTCTGGGATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAG +GCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGACAAGAGTC +CTGGCTATAGAAAGATACCTAAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGA +AAACTCATCTGCACCACTGCTGTGCCTTGGAACTCTAGTTGGAGTAATAAATCTCAAAGT +ACTATTTGGAATAACATGACCTGGATGCAGTGGGATAGAGAAATTAATAATTACACAGGC +ATAATATACAGTTTGCTTGAAGAATCGCAAAACCAGCAGGAGAAAAATGAACAGGATTTA +TTAGCATTGGACAAGTGGCAAAGTCTGTGGAATTGGTTTGGTATAACAAAATGGCTGTGG +TACATAAAAATATTCATAATGATAGTAGGAGGCTTAATAGGGTTAAGAATAATTTTTGCT +GTGCTCTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCCTTGTCGTTTCAGACCCTT +ATCCCAAACCCGAGGGGACCAGACAGGCCCGGAGGAATCGAAGAAGAAGGTGGAGAGCAA +GACAGAGACAGATCCGTTCGATTAGTGAGCGGATTCTTGGCGCTTGCCTGGGACGACCTG +CGGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGGGACTTACTATTAATTGCAGCGAGG +ACGGTGGAACTTATGGGACGCAGCAGCCTCAGGGGATTACAGAGGGGGTGGGAAATCCTT +AAGTATTTAGGAAGCCTTGTGCAGTATTGGGGTCTAGAGCTAAAAAAGAGTGCTATTAGT +GTGCTTGATGCCACAGCAATAGCAGTAGCTGAAGGAACAGATAGGATTATAGAAGCAATA +CAAAGAGTTTGGAGAGGCATCTGCAACATACCTAGAAGAATAAGTCAGGGCTTTGAAGCA +GCTTTGCAATAAAATGGGAAACAAATGGTCAAAATGTAGTCCAGTGGGATGGCCTGCTAT +AAGAGAGAGAATAAGACGAGCTGAGCCAGCAGCAGAGGGAGTAGGACCAGCGTCTCAAGA +CTTAGATAGATATGGGGCACTGACAAGCAGCAACACCCCTGCCAATAATGCTGATTGTGC +CTGGTTGGAAGCGCAACAGGAGGAAGAAGAGGTAGGCTTTGTAAGACCAATGACTTATAA +GGCAGCATTCGATCTCAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTA +CTCCAAGAAAAGGCAAGACATCCTTGATTTGTGGGTCTATAACACACAAGGCTACTTCCC +TGATTGGCAAAACTACACACCAGGACCAGGAGTCAGATTTCCCCTGACCTTTGGATGGTG +CTTCAAGCTAGTGCCAGTTGACCCAAGGGAAGTGGAAGAGGCCAATGCAGGAGAGACCAA +CTGCTTGCTACACCCTATGAGCCTACAGGGAATGGAAGATGACCACGGTGAAGTATTACA +GTGGAAGTTTGACAGTATGCTAGCACGCAGACACGTGGCCCGCGAGCTACATCCGGAGTA +TTACAAAAACTGATGACACAGAAGGGACTTTCCGCTGGGACTTTCCACTGGGGCGTTCCA +GGAGGAGTGGTCTGGCGG +>D.CM.2001.0.01CM_0009BBY.AY371155 AY371155 +GCGAGAGCGTCAGTATTAAGCGGAGGAAAATTGGATGCATGGGAGAAAATTCGGTTACGG +CCAGGGGGACGCAAAAGGTATAGGCTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAA +CGATTTGCACTTAATCCTGGCCTTTTGGAAACATCAGAGGGCTGTAAACAAATAATAAGC +CAGTTGCAGCCATCTCTTAAGACAGGATCAGAAGAGCTTAGATCATTATTTAATACAGTA +GCAACACTCTATTGTGTACATAACAGAATAGAGGTAAAAGACACCAAAGAAGCTTTAGAT +AAGATAGAGGAAGAACAGAAAAAAGCACAGCAAGCAGCAGCTAACAAAGGAAACAACAGC +CAGGTCAGCCAAAATTACCCTATAGTGCAGAACTTACAGGGACAAATGGTACATCAAGCC +ATATCACCTAGAACCTTGAACGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAACCCA +GAAGTAATACCCATGTTTTCAGCGTTAGCAGAAGGAGCCACCCCACAAGATTTAAACACC +ATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAAT +GAGGAAGCTGCAGAATGGGACAGGCTACATCCAGTGCATGCAGGGCCCGTTGCACCAGGC +CAGATGAGAGAACCAAGGGGAAGTGATATTGCAGGAACTACTAGTACCCTTCAGGAACAA +ATGGCATGGATAACAGGCAATCCACCTGTCCCGGTAGGGGAAATCTATAAGAGATGGATA +ATCTTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGTATTTTGGATATAAGA +CAAGGACCAAAAGAGCCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCC +GAACAAGCTTCACAAGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTTCAAAATGCA +AACCCAGACTGTAAAACTATCTTAAAGGCATTGGGACCAGGAGCTACATTAGAAGAAATG +ATGACAGCATGTCAGGGAGTGGGAGGGCCCAGCCATAAAGCAAGAGTCTTGGCTGAGGCA +ATGAGCCAAGCAACAGGTGCCTCTGCTGCAATAATGATGCAGAAAGGCAATTTTAAGGGC +CCAAGGAGAACTGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCACATAGCAAAAAATTGC +AGGGCTCCTAGGAAAAAGGGTTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAT +TGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCCACAAGGGAAGGCCG +GGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAATAGAGAGCTTCGGGTTT +GGGGAAGAGGTAACCCCCTCTCAGAAACAGGAGCAGAAGGACAAAGACAAGGAACTGTAT +CCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAATAAAAGTAGGGG +GACAGTTAAAAGAAGCTCTACTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAA +ATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAA +GACAGTATGATCAGGTACCTATAGAAATCTGTGGACAGAAGGCTATAGGTACAGTATTAG +TAGGACCTACACCTGTCAACATAATTGGAAGAAATTTGTTGACCCAGATTGGCTGCACTC +TAAATTTTCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATG +GCCCAAAAATTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTT +GTACAGAAATGGAAAAGGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATA +CTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAGTGGAGAAAGTTAGTAGATTTCA +GAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCGCATCCCG +CAGGGCTGAAAAAGAAAAAATCAGTAACAGTACTGGATGTAGGTGATGCATACTTTTCAG +TTCCCTTAGATAAAGATTTTAGGAAGTACACTGCATTCACCATACCTAGTACAAACAATG +AGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAGGGCTCACCAG +CAATATTCCAATGTAGTATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAAC +TAATTATCTATTCATACATGGATGATTTGTATGTAGGATCTGATTTAGAGATAGGGCAGC +ATAGATCAAAAATAGAAGAATTAAGAGAACATTTATTGAAGTGGGGACTTACCACACCAG +ATAAGAAACATCAGAAAGACCCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATA +AATGGACAGTACAGCCTATAAAACTGCCAGAAAAAGAAAGCTGGACTGTCAATGATATAC +AGAAGTTAGTGGGAAAATTAAATTGGGCAAGCCAGATTTATTCAGGAATTAAAGTAAAGC +AATTATGTAAACTCCTTAGGGGAGCTAAAGCATTAACAGAGGTAATACCACTAACAAAAG +AAGCAGAATTAGAACTAGCAGAAAACAGGGAGATTCTCAGAGAACCAGTACATGGAGTGT +ATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAACAAGGGGAAAGCCAATGGT +CTTGGCAAATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAAAATGA +AGAGTGCCCATACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAG +AAAGCATAATAATATGGGGAAAGATTCCTAAATTTAGACTACCCATACAAAAAGAAACAT +GGGAAGCATGGTGGATGGAGTATTGGCAGGCCACTTGGATTCCTGAGTGGGAGTTTGTCA +ATACCCCTCCTTTAGTGAAATTGTGGTATCAGTTAGAGAAGGAACCCATAATAGGAGCAG +AAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATG +TTACTGACAAAGGAAGACAGAAAGTTGTCCCGTTTACTGACACTACTAATCAGAAGACTG +AGTTACAAGCAATTAATCTAGCTTTGCAGGATTCGGGGTCAGAAGTGAACATAGTAACAG +ATTCACAATATGCATTAGGAATCATTCAAGCACAACCAGACAAGAGTGAATCAGAATTAG +TCAGTCAAATAATAGAAGAGTTAATAAAAAAGGAAAAGGTCTACCTAGCATGGGTACCAG +CACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAGCGGAATTAGAA +AAGTACTATTTTTGGATGGAATAGATAAAGCTCAAGAGGAACATGAAAAATATCACAGCA +ATTGGAGAGCAATGGCTAGTGATTTTAACCTACCACCTGTGGTAGCAAAAGAAATAGTAG +CTAGCTGTGATAAATGTCAACTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTC +CAGGAATATGGCAATTAGATTGTACACATCTAGAAGGAAAAGTTATCCTGGTAGCAGTTC +ATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAAGAAACAG +CATACTATCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAGTACATACAGACAATG +GCAGTAATTTTACCAGTGCTGCTGTTAAGGCCGCCTGTTGGTGGGCAGGTATCAAGCAGG +AATTCGGAATTCCCTACAATCCCCAAAGCCAAGGAGTAGTAGAATCTATGAATAAAGAAT +TAAAGAAAATTATAGGACAGGTAAGAGATCAAGCTGAACATCTTAAAACAGCAGTACAAA +TGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGG +AAAGAATAATAGACATAATAGCAACAGACATACAAACTAGAGAACTACAAAAACACATCA +CAAACATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCAATTTGGAAAGGAC +CAGCAAAGCTTCTTTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAA +AGGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTG +ATGATTGTGTGGCAAGTAGACAGGATGAGGATTAACACATGGAAAAGTTTAGTAAAATAC +CATATGCATGTTTCAAAGAAAGCTAAAGGATGGTTTTATAGACAGCACTATGAGAGCCCT +CACCCAAAAATAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAAACTGGTGGTAACA +ACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATCTGGGTCAGGGAGTCTCCATA +GAATGGAGAAAAAAGAGATATAGCACACAAGTAGACCCTGGTTTGGCAGACCAACTAATT +CATATGTATTACTTTGATTGTTTTGCAGACTCTGCTATAAGAAAAGCCATATTAGGACAT +AGAGTTAGTCCTAGGTGTGATTATCAAGCAGGACATAACAAGGTAGGATCCTTACAATAT +TTGGCACTAACAGCACTAATAGAGCCAAAAAAGATAAAACCACCTTTGCCTAGTGTTAGG +AAGTTAACAGAAGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAACCAT +ACAATGAATGGACATTAGAGATTTTAGAGGAGCTCAAGAGTGAAGCCGTTAGACATTTCC +CTAGGGTATGGCTTCATGGCTTAGGACAACATATTTATGAAACTTATGGGGATACCTGGG +CAGGAGTTGAAGCTATAACAAGAGTCCTGCAACAACTACTGTTCATTCATTTCAGAATTG +GGTGCCAACATAGCAGAATAGGCATTACTCGACAGAGAAGAGCAAGAAATGGATCCAGTA +GATCCTAACCTAGAGCCCTGGAAACATCCAGGAAGTCAGCCAAGTACTGCTTGTAACTCA +TGTTATTGTAAACAGTGTTGCTATCATTGCCAACTTTGCTTCATAAAGAAAGGCTTAGGC +ATCTCCTATGGCAGGAAGAAGAGAGGACAGCGACGAGGACCTCCTCAAGGTAGTCAGACT +CATCAAGTTCCTGTACCAAAACAGTAAGTAGTACATGTAATGCAATCTTTAGAGATATTA +GCAATAGTAGCATTAGTAGTAGCGCTAATATTAGCAATAGTTGTGTGGACCATAGCATAC +ATAGAATATAGGAAAGTAAAGAGGCAAAGAAAAATAAATCAGTTAATTGATAGAATAATA +GAAAGAGAAGAAGACAGTGGCAATGAGAGTGAGGGGGATAGAGAGGAATTATCAACACTT +ATGGAAATGGGGCACCATGCTCCTTGGGATGTTGCTGATAACATATAGTGCAGCAAGTAA +TTTGTGGGTCACAGTATATTATGGGGTGCCTGTATGGAAAGAAGCAAACGCCACTCTATT +TTGTGCATCAGATGCTAAAGCATATAAAGCAGAGGCACATAATATCTGGGCTACACATGC +CTGTGTACCCACGGACCCCAATCCACAAGAAATAGAACTGAAAAATGTCACAGAAAATTT +TAATATGTGGAAAAATAACATGGTGGAACAAATGCATGAGGATATAATCAGTTTATGGGA +ACAAAGCCTAAAACCATGTGTAAAATTAACCCCACTATGTGTCACTTTAAACTGCACTGA +TGCTAAAGTGAGCAGCACTGAGACTGAATTGAACAACAGCAGCACTGGAGAGATGAAAAA +TTGCTCTTTTAATATAACCACAGAATTAAGGGATAAGAAAAAGCAAGAATATGCACTTTT +TTATAAACTTGATATAGTAGAAATAGATAAGAAGGATAATAGTACTGATAATAGTACTGA +TGGAACTTATAGGTTAATAAATTGTAATACCTCAGCCATTACACAAGCTTGTCCAAAGGT +ATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGATTTGCAATTCTCAAATG +CAATGACAAGAGGTTCAATGGAACAGGCCCATGCACAAATGTCAGCACAGTACAATGTAC +ACATGGAATCAAGCCAGTAGTGTCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGA +AGACATTATGATTAGATCTGAAAATTTCACAGACAATGTTAAAAACATAATAGTGCAGTT +TAACACAACTATAAACATTACCTGTATAAGGCCTGGTAACAATACAAGAAAAAGTATACA +TTTCGGACCAGGGCAGGCACTCTATGCAAATGATATAATAGGAGACATAAGAAAAGCTCA +TTGTAATATTAGTGGAAAAGATTGGAATAACACTCTACAAGAGGTAGCTAGAAAATTAGG +AAATCTCTATAACAAAACAATAAGTTTTAGACCATCCTCAGGAGGGGACCCAGAAATTAC +AACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACATCAAAACTGTTTAA +TAGAACATGGAGTATTGGTACATGGGAGGATAGTACAGGGAATGATAATAATACTGCATT +AAATGATACAATAACCCTCCCATGTAGAATAAAACAAATTATAAACATGTGGCAGGAAGT +AGGAAAAGCAATGTATGCCCCTCCCATCGCAGGACAAATTAAATGTACATCAAATATTAC +AGGGCTATTATTGACAAGAGATGGTGGTAATAATAATTCTGGTAATAATTCTGGAAATTC +TACAGAGATCTTCAGGCCTGGAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATA +TAAATATAAAATAGTAAGAATTGAACCACTAGGAGTAGCACCCACCAGGGCAAAGAGAAG +AGTGGTGGAAAGAGAAAAAAGAGCAATAGGATTAGGAGCTATGTTCCTTGGGTTCTTGGG +AGCAGCAGGAAGCACGATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGACTATT +ATTGTCTGGTATAGTGCAACAGCAAAATAATTTGCTGAGAGCTATAGAGGCGCAACAACA +TCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAATCCTGGCTGTGGA +AAGATACCTGAAGGATCAACAGCTCCTAGGAATTTGGGGTTGCTCTGGAAAACACATCTG +CACCACTAATGTGCCCTGGAATTCTAGTTGGAGTAATAAATCTCTAGATGATATTTGGGA +GAACATGACCTGGATGCAATGGGAAAAAGAAATTGAGAATTACACAGGTGTGATATACAA +TTTAATTGAAGAGTCGCAAATCCAGCAAGAAAAAAATGAAAAAGAATTATTAGAATTGGA +TAAGTGGGCAAGTTTGTGGAATTGGTTTAGCATAACTAACTGGCTGTGGTATATAAGAAT +ATTCATCATGATAGTAGGAGGCTTAATAGGCTTAAGAATAGTTTTTGCTGTGCTGTCTAT +GGTAAATAGAGTTAGGCAGGGGTACTCACCTCTATCATTTCAGACCCTCCTCCCAGCCCC +GAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGCAAGACAGAGGCAC +CTCCATACGATTGGTGAACGGATTCTCAGCACTTATCTGGGACGATCTGCGGAACCTGTG +CCTCTTCAGCTACCACCGCTTGAGAGACTTAATCTTAATTGTAGCGAGGACTGTGGAACT +TCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATCTGTGGAATCTCCTACAGTATTGGGG +TCAGGAACTGAAGAATAGTGCTATTAGCTTGTATAACGCCACAGCAGTAGCAGTAGCTGA +GGGGACAGATAGGGTAATAGAACTAGGGCAAAGAGCTTTTAGAGCTGCTCTTCATATACC +CACAAGAATAAGACAAGGTTTAGAAAGGGCTTTGCTATAAAATGGGTGGCAAATGGTCAA +AAAGTAGTATAGTTGGATGGCCTGCTATAAGGGAAAAAATAAGAAGAACTAATCCTATTC +CAGCAGCAGATGGGGTAGGAGCAGTATCTAAAGATCTGGAAAAACATGGGGCAATCACAA +GTAGCAATACAGCAGATACTAATGCTGCCTGTGCCTGGCTAGAAGCACAAGAAGAGGAAG +AGGTGGGCTTTCCAGTCAGACCTCAAGTACCTTTAAGACCAATGACTTACAAGGGAGCTT +TAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAGTTTACTCCCAAA +GAAGACAAGAGATCCTTGATCTTTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGC +AGAACTACACACCAGGGCCAG +>G.BE.1996.0.DRCBL.AF084936 AF084936 +ACTTGACCTATGGGCTATAATACCAAAGGATTCTTCCCAGATTGGCAGAACTACACACCA +GGGCCAGGGACTAGATTCCCACTGACCCTTGGGTGGTGCTTCAAACTGGTACCAATGGAT +CCATCAGAGGTAGAGGAAGCCAATAAAGGAGAGAACAACAGTCTATTACACCCCATCTGC +CAGCATGGAATGGAGGACGAAGACAGAGAAGTGCTGGTGTGGAAATTTGACAGTAGCCTA +GCACGGAGACACATAGCCCGAGAGCTGCATCCGGAGTACTACAAAGACTGCTGACACAGA +AGTTGCTGACAAGGGGACTTTCCGCCTGGGACTTTCCAGGGGAGGCGCGGCCTGGGAGGG +GCTGGGGAGTGGCTAACCCTCAGAAGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGG +GTCTCTCTTGTTAGACCAGATTTGAGCCTGGGAGCTCTCTGGCTAGCAGGGGAACCCACT +GCTTAGAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGT +GTGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGATAGTGTAAAAATCTCTAGCAG +TGGCGCCCGAACAGGGACTTGAAAACGAAAGTTAATAGGGACTCGAAAGCGAAAGTTCCA +GAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGC +GGCGACTGGTGAGTACGCCAAAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGT +GCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCTTGGGAGAAAATTCGGTTGAGG +CCAGGGGGAAAGAAAAGATATAGAATGAAACATTTAGTATGGGCAAGCAGGGAGCTGGAC +AGATTTGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGTTGTCAAAAAATAATGGCA +CAGTTGCAACCAGCTCTCCAAACAGGAACAGAGGAGATTAAATCACTATTTAATACAGTA +GCAACCCTCTATTGTGTACATCAAAAGATAGAGGTAAGAGACACCAAAGAGGCTCTAGAG +GAAGTGGAAAAGATACAAAAGAAGAGTCAGCAAAAAGAAAACAGCAGCAGCCAAGTCAGT +CAAAATTACCCTATAGTGCAGAATGCACAAGGGCAAATGGTACACCAGGCCATATCACCT +AGAACTTTGAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGTCCAGAAGTAATA +CCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGCTAAAT +ACAGTGGGGGGGCATCAAGCAGCTATGCAAATGTTAAAGGAGACTATCAATGATGAAGCT +GCAGAATGGGACAGGCTACATCCACAGCAGGCAGGGCCTATTGCACCAGGCCAGATAAGG +GACCCAACGGGAAGTGATATAGCAGGAGCTACTAGTACCCTGCAGGAACAGATAAGATGG +ATGACCAGCAACCCACCTGTCCCAGTGGGAGAAATTTATAAAAGATGGATAATCCTGGGG +TTAAATAAAATAGTAAGAATGTACAGCCCTGTCAGCATTTTGGACATAAGACAGGGGCCA +AAAGAACCCTTTAGAGATTATGTGGATAGATTCTTTAAAACCCTGAGAGCTGAGCAAGCT +ACACAGGAAGTAAAAAGCTGGATGACAGACACCTTGTTGATCCAAAATGCAAACCCAGAT +TGTAAGATCATCTTAAAAGGATTAGGACAAGGAGCTACACTAGAAGAAATGATGACAGCA +TGTCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTAGCTGAGGCAATGAGCCAG +GCATCAGGTGCAGCAGCAGCCATAATGATGCAGAAAAGCAATTTCAAGGGCCCAAGAAGA +ACAATTAAATGTTTCAACTGTGGCAAGGAAGGACATCTAGCCAGAAATTGCAGGGCCCCT +AGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAGGGACATCAAATGAAAGAATGCACAGAA +AGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGGAGGCCAGGGAATTTC +CTTCAGAACAGGCCAGAGCCAACAGCCCCACCCGCAGAGAACTTCGGGTTCGGGGAGGAG +ATAGCCCCCTCCCCGAAGCAGGAGCAGAAGGAAAAGGAACTATATCCTCTATCTTCCCTC +AAATCACTCTTTGGCAACGACCAATAGTCAAAGTAAGAATAGGGGGACAGCTAATAGAAG +CCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAGATTTACCAGGAAAAT +GGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAA +TACTTATAGAAATTAGTGGAAAAAGGGCTATAGGGACAGTATTAGTAGGACCTACACCTA +TCAATATAATTGGGAGAAATATGTTGACTCAGATTGGTTGCACTTTAAATTTTCCAATTA +GTCCTATTGAAACTGTGCCAGTAAAATTAAAGCCAGGAATGGATGGGCCACGGGTTAAAC +AATGGCCATTGACAGAAGAGAAAATAAAAGCATTAACAGAAATTTGTAATGAGATGGAAA +AGGAAGGAAAAATTTCAAAGATTGGGCCTGAAAACCCATATAACACTCCAATATTTGCCA +TAAAGAAAAAAGACAGTACTAGATGGAGAAAATTGGTAGATTTCAGAGAGCTCAATAAAA +GGACTCAAGACTTCTGGGAGGTCCCATTAGGAATACCTCATCCCGGGGGGTTAAAACAGA +AAAGATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGATGAAA +ACTTTAGAAAATATACTGCATTCACTATACCTAGTACAAATAATGAGACACCAGGAATTA +GATATCAGTACATCCACAGGGATGGAAAGGATCACCAGCAATATTTCAGAGTAGCATGAC +AAAAATCTTAGAGCCCTTTAGAACACAAAATCCAGAAATAGTGATCTACCAATACATGGA +TGATTTATATGTAGGATCAGACTTAGAAATAGGGCAGCATAGAGCAAAAATAGAAGAGTT +AAGAGAACATCTACTGAGATGGGGATTTACCACACCAGATAAGAAACATCAGAAAGAACC +TCCATTTCTTTGGATGGGATATGAGCTCCATCCTGACAAATGGACAGTACAACCTATACA +GCTGCCAAACAAGGAAAACTGGACTGTTAATGATATACAAAAGTTAGTGGGAAAACTAAA +TTGGGCAAGTCAGATTTATCCAGGAATTAAAGTAAAGCAATTATGCAAACTCATTAGGGG +GGCCAAAGCATTAACAGACATAGTATCAATGACAGCAGAAGCAGAAATGGAGTTGGCAGA +GAACAGGGAGATTCTAAAAGAACCTGTACATGGAGTCTATTATGACCCATCAAAAGACCT +AATAGCAGAAGTACAGAAACAAGGGCTAGGCCAATGGACATATCAAGTTTATCAAGAGCC +ATATAAAAATCTGAAAACAGGAAAATATGCAAAAGGGGGGTCTGCCCACACTAATGATGT +AAAGCAATTAACAGAAGTAGTGCAAAAAATAGCCACAGAGGGCATAATAATATGGGGAAA +GATTCCTAAATTTAAATTACCTATAAAAAAAGAAACATGGGAAGTGTGGTGGACAGAGTA +TTGGCAGGCCACTTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGTCAAATT +ATGGTATCAGTTAGAAACAGAACCCATACCAGGAGTAGAAACTTACTATGTAGATGGGGC +AGCTAATAGGGAGACAAAATTAGGAAAGGCAGGATATGTGACTGACAAAGGAAGACAAAT +TATTATTACCCTAACTGAAACAACAAACCAAAAGGCTGAATTACATGCAATTCAGCTAGC +TCTGCAGGACTCACAATCAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAGGAAT +CATTCAAGCACAGCCAGATAGGAGTGAATCAGAAATAGTCAATCAAATAATAGAACAGCT +AATAAAAAAGGAAAAGGTCTACCTGTCATGGGTACCAGCACACAAAGGGATTGGAGGAAA +TGAACAAGTGGATAAATTAGTCAGTAGTGGAATCAGGAAAGTACTATTTTTAGATGGCAT +AGATAAAGCCCAAGAAGAGCATGAAAGATATCACAGCAATTGGAAAGCAATGGCTAGTGA +TTTTAATCTGCCACCTATAGTAGCAAAAGAAATAGTGGCCAGCTGTGATAAATGCCAGTT +AAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTGGATTG +TACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTGGCTATATAGA +AGCAGAAGTTATCCCAGCAGAAACAGGACAGGAAACAGCATACTTTATATTAAAATTAGC +AGGAAGGTGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTTACCAGTGCTGC +AGTAAAGGCAGCATGTTGGTGGGCAAGCATCACACAGGAATTTGGAATTCCCTACAATCC +CCAAAGCCAAGGAGTAGTGGAATCTATGAATAAGGAATTAAAGAAAATCATAGGACAGGT +CAGGGATCAAGCTGAACATCTTAAGACAGCAGTACAGATGGCAGTATTCATTCACAATTT +TAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGC +ATCAGATATACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGT +TTATTACAGGGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGG +TGAAGGGGCAGTAGTAATACAAGACAATAACGAAATAAAAGTAGTACCAAGAAGAAAAGC +AAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACA +GGATGAGGATTAGAACATGGAACAGTCTAGTGAAACATCATATGTATATTTCAAAGAAAG +CTAAAGGCTGGTTTTATAGACATCACTATGAAAGTAGGCACCCAAAAGTAAGTTCAGAAG +TACACATCCCACTAGGAGATGCTAAACTAGTAGTAAGAACATATTGGGGTCTGCATACAG +GAGACAAAGAATGGCACTTGGGGCATGGGGTCTCCATAGAATGGAGGCAGGGAAGATATA +GTACACAAGTAGATCCTGACCTAGCAGACCACCTAATTCATCTGCATTATTTTAATTGTT +TTTCAGAATCTGCCATAAGGAAAGCCATATTAGGACAAACAGTTAGGCCTAGTTGTGAAT +ATCCAGCAGGGCATAATAAGGTAGGATCTTTACAATATTTGGCATTAAAAGTATTAGTGG +CACCAACAAGGAGAAGGCCACCTTTGCCTAGTGTTAGGAAATTAACAGAGGATAGATGGA +ACGAGCCCCAGAAGACCAGGGGCCACAGAGAGAACCCCACAATGAATGGGCATTAGAACT +GTTAGAAGAGCTTAAACATGAAGCTGTTAGACATTTTCCTAGGCCCTGGCTCCATGGTTT +AGGACAGCTTATCTATAACACTTATGGGGATACTTGGGAGGGAGTTGAAGCCATAATAAG +AATACTACAACAACTACTGTTTATCCATTTCAGAATTGGGTGCCAACATAGCAGAATAGG +CATTATTCCACAGAGGAGAAGAGTAAGGGATGGATCCGGTAGATCCTAAACTAGAGCCCT +GGAAGCATCCGGGGAGTCAGCCTAAAACTCCCTGTAACAATTGCTATTGTAAAAGTGTTG +CTGCATTGCAAGTTTGCTTTCTGAACAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGC +GGAAGCACCGACGAGGAACTCCTCACAGCAGTAAGGATCATCAAACTCCTGTACCAAAGC +AGTAAGTAGAAATAAATAGTAGATGTAATGCAACCACTAGAAATATCTGCAATAGTAGGC +TTAATAGTAGCATCCATAGCAGCCATAGTTGTGTGGACTATAGTATTTATAGAATATAGA +AAAATAAGAAAACAGAAAAGAATAGAAAAGTTACTTGATAGGATAAGAGAAAGAGCAGAA +GACAGTGGAAATGAGAGTGAAGGGGATACAGAGGAATTGGCAACACTTATGGAACTGGGG +GATTTTGATCCTTGGGTTGGTGATAATTTGTAGTGCAGAAAAATTGTGGGTCACAGTCTA +TTATGGAGTACCTGTGTGGGAAGATGCAAATGCCCCTCTATTTTGTGCATCTGATGCTAA +AGCACATAGTACTGAAAGTCATAATATCTGGGCCACACATGCTTGTGTACCCACAGATCC +CAGCCCACAAGAAATAAATATGAGAAATGTAACAGAAAATTTTAACATGTGGAAAAATAA +CATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATGAAAGCCTAAAGCCATG +TGTAAAGCTAACCCCTCTCTGTGTTACTTTAAACTGTACTGAGATAAACAATAATAGTAC +TCGGAATATCACTGAGGAGTACAGAATGACAAACTGCTCTTTCAATATGACCACAGAACT +GAGAGATAAGAAGAAGGCAGAATACGCGCTTTTCTATAGAACTGATGTAGTACCAATTAA +TGAGATGAATAATGAAAATAATGGTACAAATAGTACATGGTATAGGCTGACAAATTGTAA +TGTCTCAACCATTAAACAGGCTTGTCCAAAGGTAACTTTTGAGCCAATTCCCATACATTA +TTGTGCTCCAGCTGGTTTTGCGATCCTAAAGTGTGTGGATAAGAAGTTCAATGGAACAGG +AACATGTAACAATGTCAGTACAGTACAATGTACACATGGAATTAAGCCAGTAGTATCAAC +TCAACTACTGCTGAATGGCAGTTTAGCAGAAAAAGATATCATAATTAGTTCTGAAAATAT +CTCAGACAATGCCAAAGTCATAATAGTGCACCTTAATAGGTCTGTAGAAATTAATTGTAC +CAGACCCAACAACAATACAAGAAGAAGTGTAGCAATTGGACCAGGACAAGCATTCTATAC +AACAGGAGAAGTAATAGGAGACATAAGAAAGGCACATTGTAATGTTAGTTGGACAAAATG +GAATGAGACGCTAAGGGATGTCCAGGCAAAACTACAGGAATACTTTATTAATAAGAGCAT +AGAATTTAACTCATCTTCAGGAGGGGACCTAGAAATTACAACACATAGTTTCAATTGTGG +AGGGGAATTTTTCTATTGTAATACATCAGGACTATTTAATAATAGTATATTAAAGAGTAA +TATATCAGAAAATAATGATACTATCACACTTAATTGTAAGATAAAACAAATTGTGAGAAT +GTGGCAGAGAGTGGGACAAGCAATGTATGCCCCTCCCATTGCAGGAAACATTACATGTAG +ATCAAACATTACAGGACTAATATTAACAAGAGATGGTGGGGATAACAATAGCACTAGTGA +GATCTTCAGACCTGGAGGAGGAGATATGAAAAACAATTGGAGAAGTGAATTATATAAGTA +TAAAACAGTAAAAATCAAATCACTAGGAATAGCACCCACCAGGGCAAGGAGAAGAGTGGT +GGAGAGAGAAAAAAGAGCAGTTGGAGTAGGAGCTATCTTCCTTGGGTTCTTAGGAACAGC +AGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGTCAGACAATTATTGTC +TGGCATAGTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCGCAGCAGCATCTGTT +GCAACTCACAGTCTGGGGCATTAAACAGCTCCGGGCAAGAGTCCTGGCTCTGGAAAGATA +CCTAAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCAC +TAATGTGCCCTGGAACACTAGTTGGAGTAATAAATCTTATAATGAGATTTGGGAGAACAT +GACTTGGATAGAATGGGAAAGGGAAATTGACAATTACACATACCACATATACAGCCTGAT +TGAACAATCGCAAATCCAGCAGGAAAAGAATGAACAAGACTTATTGGCATTGGACCAGTG +GGCAAGTCTGTGGAGTTGGTTTAGCATCTCAAACTGGCTATGGTATATAAGAATATTTGT +AATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTGCTGTGCTATCTATAGTAAA +TAGAGTTAGGCAGGGCTACTCACCTTTATCCTTTCAGACCCTTCTCCACCACCAGAGGGA +ACCCGACAGGCCCGCAGGAATCGAAGAAGGAGGTGGAGAGCAAGACAGAGACAGATCCAT +TCGATTAGTGAGCGGATTCTTAGCACTTGCCTGGGACGACCTGAGGAGCCTGTGCCTCTT +CAGCTACCACCGCTTGAGAGACTTCATCTTGATTGCAGCGAGGACGGTGGAACTTCTGGG +ACGCAACAGTCTCAAGGGACTGAGATTGGGGTGGGAAGCCCTCAAATATTTGTGGAATCT +TCTGTTGTATTGGGCTCGGGAACTAAAGAATAGTGCTATTAATTTGCTTGATACAATAGC +AATAGCAGTAGCTAACTGGACAGATAGGGTTATAGAAGTAGCACAAAGAGCTGGTAGAGC +TGTTCTCAACATACCTAGAAGAATAAGACAGGGCTTAGAAAGAGCTTTGCTATAAAATGG +GAAACAAGTGGTCAAAAAGGAAAGTAGCTGGATGGCCCGAGGTAAGGGAAAGACTAAGAC +AACACCCTGCAGCAGCAGAAGGAGTAGGAGCAGTATCTCAAGATTTAGATAGGCATGGAG +CCATCACAAGTAGAAATACAGCAGGCACCAATCCTGATTGTGCCTGGCTGGAAGCACAAG +AGGAGGACTCAGAGGTAGGCTTTCCAGTCAGACCACAGGTACCTTTAAGACCTATGACTT +ATAAGGCTGCGTTTGATCTCAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAG +TTTACTCCAAGAAAAGACAAGAGATCCTTGACCTATGGGTCTATCATACACAAGGATTCT +TCCCAGATTGGCAGAACTACACACCAGGGCCAGGGACTAGAGTCCCACTGACCTTTGGGT +GGTGCTTCAAACTGGTACCAATGGAGCCATCAGAGGTAGAGGAAGCCAATAAGGGAGAGA +ACAACAGCCTGTTACACCCCATCTGCCAGCATGGAATGGAGGACGAAGATGGAGAAGTGC +TGGTATGGAGATTTGACAGTAGCCTGGCACGGAGACACTTAGCCCGAGAGCTGCATCCGG +AGTACTACAAAGACTGCTGACACAGAAGTTGCTGACAAGGGGACTTTAAGTTGCTGACAA +AGGACTTTCCGCCCGGGACTTTCCAGGGGAGGCGCGGCCTGGGAGGGGCTGGGGAGTGGC +TAACCCTCAGAAGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGGGTCTCTCTTGTTA +GACCAGATTTGAGCCTGGGAGCTCTCTGGCTAGCAGGGGAACCACTGCTTAGAGCCTCAA +TAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAAC +TAGAGATCCCTCAGACCACTCTAGATAGTGTAAAAATCTCTAGCA +>CRF01_AE.CN.2007.0.07CNYN315.KF835502 KF835502 +GTGGCGCCCGAACAGGGACTTGAAAGTGAAAGTTAATAGGGACTCGAAAGCGGAAGTTCC +AGAGAAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAG +CGGCGACTGGTGAGTACGCCAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTG +CGAGAGCGTCGGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTACGGC +CAGGGGGAAGAAAAAAGTATCGGATGAAACATTTAGTATGGGCAAGCAGAGAGTTAGAAA +GATTTGCACTCAACCCTGGCCTTTTAGAAACAGCAGAAGGGTGCCAACAAATAATAGAAC +AAGTACAGCCAGTTCTCAAGACAGGATCAGAAGAACTTAGATCATTATTTAATTTAGTAG +TAACCCTCTGGTGCGTGCACCAAAGGATAGAGATAAAAGACACCAAGGAAGCTCTAGATA +AATTAGAGGAAGTACAAAATAAGAACAAGCAAAAGACACAGCAGGCAGCAGCTGACACAG +GAAGCAGCAGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATGG +TACATCAGCCTGTATCACCTAGAACTCTGAATGCATGGGTAAAGGTAGTAGAAGAAAAGG +GTTTTAACCCAGAAGTAATACCCATGTTCTCAGCATTATCAGAGGGAGCCACCCCACAAG +ATTTAAATATGATGCTAAATATAGTGGGGGGACACCAGGCAGCAATGCAAATGTTAAAAG +AAACCATCAATGAGGAAGCTGCAGAATGGGATAGGGTACACCCAGTACATGCAGGGCCTA +TTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCC +TTCAAGAACAAATAGGATGGATGACAAGCAATCCACCTATCCCAGTGGGAGATATCTATA +AAAGGTGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTTAGCATTT +TGGATATAAGACAAGGACCAAAAGAACCCTTCAGAGATTATGTAGATAGGTTCTATAAAA +CTCTCAGAGCAGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACCCTACTAG +TCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGAGCCACAT +TAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTAGCCATAAAGCAAGGGTTT +TGGCTGAGGCAATGAGCCACGTACAAAATACAAATATAATGATGCAGAGAGGCAATTTTA +AGGGCCCAAAAAGAATTAAGTGCTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATT +GCAGGGCCCCTAGAAAAAAGGGCTGCTGGAAATGTGGGAAGGAAGGACATCAAATGAAAG +ACTGTACTACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGAA +GGCCGGGAAATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAACTGGG +GGATGGGGGAGGAGCAGAAAGACTCTCCTCCTTCAATTTCCCTCAAATCACTCTTTGGCA +ACGACCCCTTGTCACAGTAAAAATAGGGGGACAGCTAAAAGAAGCTCTATTAGATACAGG +AGCAGATGATACAGTATTTGAAGAAATAAATTTGCCAGGGAAATGGAAACCAAAAATGAT +AGGGGGAATTGGAGGTTTTATCAAAGTAAGGCAATATGATCAGATACCTATAGAAATTTG +TGGAAAAAGAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGACG +AAACATGTTGACTCAGGTTGGTTGTACTCTAAATCTCCCAATTAGTCCTATTGACACTAT +ACCAGTAACATTAAAGCCAGGAATGGATGGACCAAAGGTTAAACAATGGCCATTGACAGA +AGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAGATGGAAGAAGAAGGAAAGATCTC +AAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAGGACAG +CACCAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAGGATTTTTG +GGAAGTTCAATTAGGGATACCGCATCCAGCAGGATTAAAAAAGAAAAAATCAGTAACAGT +ACTAGATGTGGGAGATGCATATTTTTCAGTTCCTTTAGATGAAAGCTTTAGAAAGTATAC +TGCATTCACCATACCTAGTATAAACAATGAGACACCAGGAATCAGATATCAGTACAATGT +GCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAGAGTAGCATGACAAAAATCTT +AGAGCCCTTTAGAATAAAAAATCCAGAAATGATTATCTATCAATACATGGATGATTTGTA +TGTAGGATCTGATTTAGAAATAGGGCAGCACAGGGAAAAAATAGAACAGCTAAGAGCTCA +TCTATTGAGCTGGGGATTTACTACACCAGACAAAAAGCATCAGAAGGAACCTCCATTCCT +TTGGATGGGATATGAGCTCCATCCTGACAAATGGACAGTCCAGCCTATAGAACTGCCAGA +AAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAG +TCAAATTTATGCAGGGATTAAGGTAAAACAACTGTGTAAACTCCTCAGGGGAACTAAAGC +ACTAACAGAAGTAGTACCACTGACTGAAGAAGCAGAATTAGAGTTGGCAGAGAACAGGGA +GATTCTAAAAACCCCTGTGCATGGAGTATATTATGACCCATCAAAAGACTTAGTAGCAGA +AGTACAGAAACAAGGGCAGGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAA +TCTAAAAACAGGAAAATATGCCAGAAAAAGGTCTGCTCACACTAATGATGTAAGACAATT +AACAGAAGTGGTGCAAAAAATAGCCATGGAATGCATAGTAATATGGGGAAAGACCCCTAA +ATTTAGACTACCCATACAAAGAGAAACATGGGAAACATGGTGGATGGAATATTGGCAGGC +TACCTGGATTCCTGAATGGGAGTTTGTTAATACCCCTCCTCTAGTAAAATTATGGTACCA +ATTAGAAAAAGACCCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAGTAG +GGAGACTAAGCTAGGAAAAGCAGGGTATGTCACTGACAGAGGAAGACAAAAGATAGTTTC +CCTAACTGAGACAACAAATCAAAAGACTGAATTGCGTGCTATCCAGTTAGCCTTGCAGGA +TTCAGGATCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGC +ACAACCAGACAGGAGTGAATCAGAAGTAGTCAACCAAATAATAGAAGAGCTAATAAAAAA +GGACAAGGTCTACCTGTCATGGGTGCCAGCACACAAGGGGATTGGAGGAAATGAACAAGT +AGATAAATTAGTCAGTTCAGGGATCAGGAAAGTGCTATTTTTAGATGGAATAGATAAGGC +TCAAGAAGAACATGAAAGATATCACAGCAATTGGAGGACAATGGCTAGTGATTTTAATTT +GCCACCTATAGTGGCAAAGGAAATAGTAGCCAGCTGTGATAAATGTCAACTAAAAGGGGA +AGCTATGCATGGACAAGTGGACTGTAGTCCAGGGATATGGCAATTAGATTGCACACATCT +AGAGGGAAAAGTCATCCTGGTAGCAGTCCACGTGGCCAGTGGATATATAGAAGCAGAGGT +TATCCCAGCAGAAACAGGACAAGAGACAGCATACTTTCTGCTAAAATTAGCAGGAAGATG +GCCAGTGAAAGTAATACACACAGACAACGGTAGCAATTTCACCAGCGCTGCACTTAAAGC +AGCCTGTTGGTGGGCCAATGTCCGACAGGAATTTGGGATTCCCTACAATCCCCAAAGTCA +AGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTGAGAGATCA +AGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAA +AGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACAT +ACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAG +GGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGC +AGTAGTAATACAAGACAATAGTGATATAAAAGTAGTACCAAGAAGGAAAGCAAAGATCAT +TAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGA +TCAGAACATGGAATAGTTTAGTAAAACATCATATGCATGTCTCAAAGAAAGCTAACCAGT +GGTTTTATAGACATCATTATGAAAGCCAGCATCCAAAGGTAAGTTCAGAAGTACATATCC +CAATAGGAGAAGCTAGATTAGTAATAAGAACATATTGGGGCTTGCAGACAGGAGAAAAGG +AATGGCACTTGGGTCATGGAGTCTCCATAGAATGGAGGCAGAGAAGTTATAGCACACAAA +TAGATCCTGACCTAGCAGACCAACTGATTCATCTACAATATTTTGACTGTTTTTCAGAAT +CTGCCATAAGGAAAGCCATATTAGGACAAGTAGTTAGTCGTAGGTGTGACTATCCATCAG +GACATAACAAGGTAGGATCCTTACAATATTTGGCATTGAAAGCATTAACAACACCAAAAA +GGATAAGACCACCTCTGCCTAGTGTTAAGAAATTAACAGAAGATAGATGGAACAAGCCCC +AGAAGATCAGGGGCCACAGAGACAACCCTACAATGAATGGACATTAGAACTGTTAGAGGA +GCTTAAAAATGAAGCTGTTAGACATTTTCCTAGGCCCTGGCTCCATGGCTTAGGAGAATA +CATCTATAACACTTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGAACTTTGCA +TCAACTACTGTTTGTTCATTACAGAATTGGGTGTCAGCATAGCAGAATAGGCATTATACC +AAGGAGAAGAGGCAGGAATGGAGCCGGTAGATCCTAAACTAGAGCCCTGGAATCATCCAG +GAAGTCAGCCTACAACTGCTTGTAACAAGTGTTACTGCAAAAAATGTTGCTGGCATTGCC +AAATATGCTTTCTGAAAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAAGCACC +GACGAGGAACTCCTCGCAGCAGTAAGAACCATCAGGATCCTCTACCAGAGCAGTGAGTAA +TAAGTAAATGTAATGACGCCTTTAGAAATTAGTGCAATAGTAGGACTAGTAGTAGCTCTA +ATCTTAGCAATAGTAGTGTGGACTATAGTAGCTATAGAATATAAGAAAATACTAAGGCAA +AGAAAAATAGACAGATTAATTAAAAGAATAAGAGAAAGAGAAGAAGACAGTGGAAATGAG +AGTGAGGGAGACACAGATGAATTGGCTAAACTTGTGGAAATGGGGGACTTTGATCCTTGG +GTTGGTGATAATTTGTAGTGCCTCAAACAACTTGTGGGTTACAGTTTATTATGGGGTTCC +TGTGTGGAGAGATGCAGATACCACCTTATTCTGTGCATCAGACGCCAAAGCACATGAGAC +AGAAGTGCACAATATCTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGA +AATAATCCTAGAAAATGTAACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAGCA +GATGCAGGAGGATGTAATCAGTTTATGGGATGAAAGTCTAAAACCATGTGTAAAGTTAAC +TCCTCTCTGCGTTACTCTAAAATGTACCAATGCTAATTTGAACAATGCTAATTTGACCAA +TACAACCAGTGATAGTTTGCTCAATATGACAGGCGAGGTAAAAAACTGTACTTTTAATAT +GACCACAGAAATAAGAGATAAGAAGCAGAAAGTCTACGCACTTTTTTATAGGCCTGATCT +AGTACAAATTAACAATAGCAATCCTAGAGAGTATATGTTAATAAATTGTAATACTTCAGT +CATTAAGCAGGCTTGTCCAAAGATATCCTTTGATCCAATTCCTATACATTATTGTGCTCC +AGCTGGTTATGCGATTTTAAAGTGTAATGATAAGAAATTCAATGGGACAGGGCCATGTAA +AAATGTCAGCTCAGTACAATGCACACATGGAATTAAGCCAGTGGTATCAACTCAATTGCT +GTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAA +TGCCAAAACCATAATAGTGCAACTTAATACATCTGTAGAAATCAATTGTACCAGGCCCTC +CAACAATACAATTACAAGTACACGTATAGGACCAGGACAAATGTTCTATAGAACAGGAGA +CATAAAAGGAGACATAAGGAAAGCATATTGTGAGATTAATGGAACAAAATGGAATAAAAC +GTTAGAACAAGTAAGGAAAAAATTAAATAAGCACTTTAACAAGACCATAATATTTCAACC +ACCCTCAGGAGGAGATAGAGAAATTACAACGCATCATTTTAATTGTAGAGGGGAATTTTT +CTATTGCGATACAACAAGATTGTTTAATGATACTGACATAAAAAATAGTAGCAATATCAC +AATTCCATGCAGGATAAAACAAATTATAAACATGTGGCAGAGAGTAGGACAAGCAATGTA +TGCTCCTCCCATCAGTGGAAGTATTAATTGTGTATCAAAAATTACAGGAATACTGTTGAC +AAGAGATGGTGATAATAATGATACTGAAACCTTCAGACCTATAGGAGGGAATATAAAGGA +TAATTGGAAAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCACTAGGAATAGC +ACCCACCAGGGCACAGAGAAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGC +TATGATCTTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCT +GACGGTACACGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAG +GGCTATTGAGGCGCAGCAGCATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCA +GGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAAGATCAACAGTTCCTAGGACTTTGGGG +CTGCTCTGGAAAAATCATCTGCACCACTAATGTGCCCTGGAACTCCACTTGGAGTAATAA +ATCTTATGAAGAAATTTGGAACAACATGACATGGGTAGAATGGGAGAGAGAAATTAGCAA +TTACACAACCCAGATATATGAAATACTTGTGGAATCGCAGAACCAGCAGGACAAGAATGA +AAAGGATTTATTAGAATTGGATAAATGGGCAAATCTGTGGAATTGGTTTGGCATAACAAA +TTGGCTGTGGTATATAAGAATATTTATAATAATAGTAGGAGGTTTAATAGGCTTAAGAAT +ATTTTTTGCTGTGCTTTCTATAGTAAATAGAGTTAGGCAGGGATACTCACCTTTGTCTTT +CCAGACCCTTACCCATCAGCAGAGGGAACCAGACAGACCCGAAAGAATCGAAGAAGGAGG +TGGCGAGCAAGGCAGAGACAGATCCGTGCGATTAGTGAGCGGATTCTTAGCTCTTGCTTG +GGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTCATCTTGAT +TGTAACGAGGACTGTGGAACTTCTGGGACGCAGCAGTCTCCAGGGACTGAGACGGGGGTG +GGAAGTCCTCAAATATCTGGGGAATCTTCTGTCATATTGGGGACAGGAACTAAAGATTAG +TGCTATTTCTTTGCTTAACGCTACAGCAATAACAGTAGGGGGGTGGACAGACTGGGTTAT +AGAAGTAGCACAAAGAGCTGGGAGAGCCATTATCCACATACCTAGAAGAATCAGACAAGG +CTTTGAAAGGGTTTTGCTATAACATGGGAGGCAAGTGGTCAAAAAGTAGCAAAAGGGGAT +GGCCTCAGGTCAGGGAAAGAATAAGGCAAACTCCTCCAGCAGCAGCAGAAGGAGTAGGAG +CAGTATCTCAAGATCTAGATAAACATGGAGCAGTAACAAGTAGTAATATGAATAATCCTG +ATTCTGTCTGGCTGAAAGCACAAGAGGAAGACGAAGAGGGGGTAGGCTTTCCAGTCAGGC +CACAGGTACCTCTAAGACCAATGACTTATAAGGGAGCTTTGGATCTTAGCTTCTTTTTAA +AAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAGAAAAGACAAGAGATCCTTGATT +TATGGGTCTATCATACACAAGGCTACTTCCCTGATTGGCACAACTACACACCAGGGCCAG +GGATTAGATTCCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGACCCAAAAG +ACATAGAGGAGGACAACAAAAGAGAAGACAGCTGCCTGCTACATCCCATAAGCCAGCATG +GAATAGAGGACGAAGACAGAGAAGTGCTGATGTGGAAGTTTGACAGTTCCCTAGCACGAA +GACACATAGCCCGAGAACTGCGTCCAGAGTTCTATAAAGACTGCTGACAAAGGAGTTTCT +AACTAGGACTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCGGGGCGGAATTGGGGAGT +GGTTAACCCTCAGAAGCTGCATAAAAGCAGCCGCTTCTCGCTTGTACTGGGTCTCTCTTG +TTAGACCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAGGGGAACCCACTG +>CRF01_AE.VN.2013.0.VN_474.MT635169 MT635169 +TCAATATTAACTGGGGGAAAATTAGATGCATGGGAAAAGATTAGGCATCTCCTATGGCAG +GAAGATGGCCAATAGATGCAAGTAGTGTGTGCCCGTCTGTGTTAGGACTCTGGTAACTAG +AGATCCCTCAGACCACTCTAGACGCCCGAACAGGGACTTGAAAGTGAAAGTTAATAGGGA +CTCGAAAGCGGAAGTTCCAGAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCA +CACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAATTTTTGACTAGCGGAGGCTA +GAAGGAGAGAGATGGGTGCGAGAGCGTCAATATTAACTGGGGGAAAATTAGATGCATGGG +AAAAAATTAGGTTACGGCCAGGGGGAAAGAAAAAATATCAACTAAAACATTTAGTATGGG +CAAGCAGAGAGTTGGAAAGATTCGCAATTAACCCTGGCCTTTTAGAAACAGCAGAAGGAT +GTCAACAAATATTAGAACAGTTACAGTCAACTCTCAAGACAGGGTCAGAAGAACTTAAAT +CATTATTTAACACAGTAGCAACCCTCTGGTGCGTGCACCAAAGGATAGAGATAAAAGACA +CAAAGGAAGCTTTGGATAAAATAGAGGAAGTACAAAACAAGAGCCAGCAAAAGACACAGC +AGGCAGCAGCTGGCCCAGGAAGCAGTAGCCAAGTTAGCCAAAATTATCCTATAGTGCAAA +ATGCACAAGGACAAATGGTACATCAGCCTGTATCACCTAGAACATTAAATGCATGGGTGA +AGGTAGTAGAAGAAAAGGGCTTTAATCCAGAAGTAATACCCATGTTCTCAGCATTATCAG +AGGGAGCCACCCCACAAGATTTAAATATGATGCTAAATATAGTGGGGGGACACCAGGCAG +CAATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGGGTACACC +CAGTACATGCAGGGCCTATTCCACCAGGCCAGATGAGGGAGCCAAGGGGAAGTGACATAG +CAGGAACTACCAGTACCCTTCAAGAACAAATAGGATGGATGACAAGTAATCCACCTATCC +CAGTGGGAGACATCTATAAAAGGTGGATAATCCTGGGATTGAATAAAATAGTAAGAATGT +ATAGCCCTGTTAGCATTCTGGACATAAGACAAGGGCCAAAAGAGCCCTTCAGGGACTATG +TAGATAGGTTCTATAAAACTCTCAGAGCGGAACAAGCTACACAGGAGGTAAAAAATTGGA +TGACAGAAACCTTGCTAGTCCAAAATGCAAATCCAGACTGTAAGTCCATTTTAAAAGCAT +TAGGAACAGGAGCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTA +GCCATAAAGCAAGAGTTTTGGCTGAGGCAATGAGCAACTTACAACAGGCAAATGTAATGA +TGCAGAGAGGCAATTTTAAGGGCCAGAAAAGAATTAAGTGCTTCAACTGTGGCAAAGAAG +GACATCTAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGGAAGG +AAGGACATCAGATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGAAAAATTTGGC +CTTCCCACAAGGGAAGGCCGGGAAATTTTCCCCAGAGCCGAACAGAGCCAACAGCCCCAC +CAGCAGAGAACTGGGAGATGGAGAGGGAGACAACCTCCTTACTGAAGCAGGAGCAGAAGG +ACAAGGAATATCCTCCTCCTTCAGTCTCCCTCAAATCACTCTTTGGCAGCGACCCATTGT +CACAGTAAGAATAGGGGGACAGCTGAAAGAAGCTCTATTAGATACAGGAGCAGATGATAC +AGTATTAGAAGAGATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGG +AGGTTTTATCAAAGTAAGGCAATATGATCAGATACTTATAGAAATTTGTGGAAAAAAGGC +TATAGGTACAGTGTTGGTAGGACCTACACCTATCAACATAATTGGACGAAATATGTTGAC +TCAGATTGGTTGTACTCTAAATTTCCCAATTAGTCCTATTGACACTGTACCAGTAACATT +AAAGCCAGGAATGGATGGACCAAAGGTTAAGCAATGGCCATTGACAGAAGAAAAAATAAA +AGCATTAACAGAAATTTGTGAAGAAATGGAAAAGGAAGGAAAAATATCAAAAATTGGACC +TGAAAATCCATACAATACTCCAGTGTTTGCTATAAAGAAAAAGGACAGTACTAAATGGAG +GAAGTTAGTGGATTTCAGAGAGCTCAATAAAAGAACTCAGGACTTTTGGGAAGTCCAATT +AGGAATACCGCATCCAGCAGGTTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGG +AGATGCATATTTTTCAGTTCCTTTAGATGAAAGTTTTAGAAAGTATACTGCATTTACCAT +ACCTAGTACAAACAATGAGACACCAGGAACCAGATATCAGTACAATGTGCTGCCACAAGG +ATGGAAAGGATCACCAGCAATATTTCAGTGTAGTATGACAAAAATATTAGAGCCCTTTAG +AATAAAAAATCCAGAAATAGTTATCTATCAATACATGGATGACTTGTATGTAGGATCTGA +CTTAGAAATAGGGCAGCACAGAGCAAAAATAGAGGAGCTAAGAAGTCATCTATTAAGCTG +GGGATTTACTACACCAGACAAAAAGCATCAGAAGGAACCTCCATTCCTTTGGATGGGATA +TGAACTCCATCCTGACAAATGGACAGTTCAGCCTATAGAACTGCCAGAAAAGGACAGCTG +GACTGTCAATGATATACAGAAATTAGTGGGAAAGCTAAATTGGGCAAGTCAAATTTATCC +AGGGATTAAAGTAAAGCAACTGTGTAAACTCCTCAGGGGAACTAAAGCATTAACAGACAT +AGTACCACTGACTGAAGAAGCAGAATTAGAATTGGCAGAGAATAGGGAGATTCTAAAGGC +CCCTGTGCATGGAGTATATTATGACCCATCAAAAGACTTAGTAGCAGAAGTACAGAAACA +AGGGCAGGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTAAAGACAGG +AAAATATGCCAGAAAAAGGTCTGCTCACACTAATGATGTAAGACAATTAACAGAAGTGGT +GCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACC +CATACAAAAAGAAACATGGGAAACATGGTGGATGGAGTATTGGCAGGCTACCTGGATTCC +TGAATGGGAGTTTGTTAATACCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAAAAAGA +CCCTATAGTAGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTAGTAGGGAAACTAAGCT +AGGAAAAGCAGGGTATGTCACTAACAGAGGAAGACAAAAGGTAGTTTCCCTAACTGAGAC +AACAAATCAAAAGACTGAATTACATGCGATCCATTTAGCCTTGCAGGATTCAGGATCAGA +AGTAAATATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGACAG +GAGTGAATCAGAAATAGTCAACCAAATAATAGAAGAGCTAATAAAAAAGGAAAAAGTCTA +TCTGTCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGT +CAGTGCAGGAATCAGGAAGGTGCTATTTTTAGATGGGATAGATAAAGCTCAAGAAGAACA +TGAAAGATATCACAACAATTGGAGAGCAATGGTTAGTGATTTTAATATACCACCTATAGT +AGCAAAGGAAATAGTAGCCAACTGTGATAAATGTCAACTAAAAGGGGAAGCTATGCATGG +ACAAGTGGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATCTAGAAGGAAAAGT +CATCCTGGTAGCAGTCCACGTGGCCAGTGGGTATATAGAAGCAGAAGTTATCCCAGCAGA +AACAGGACAGGAGACAGCATACTTTCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGT +AATACACACAGACAACGGTAGCAATTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTG +GGCCAATGTCCGACAAGAGTTTGGGATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGA +ATCCATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTAAGAGAGCAAGCTGAACACCT +TAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGG +GGGGTACAGTGCAGGGGAGAGAATAATAGACATAATAGCAACAGATATACAAACTAAAGA +ATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGA +CCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACA +AGACAATAGTGATATAAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGG +AAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAAAACATGGA +ACAGTTTAGTAAAACATCATATGTATGTCTCAAAGAAAGCTAAGAAGTGGGTTTATAAAC +ATCACTATGAAAGCCATCATCCAAAGGCAAGTTCAGAAGTACATATCCCACTAGAAGAGG +CTAAATTAGTAATAAAAACATATTGGGGTCTGCAGACAGGAGAAAAAGACTGGCACTTGG +GTCATGGAGTCTCCATAGAATGGAGGCAGAAAGAATATAGAACACAAATAGATCCTGACC +TAGCAGACCGACTGATTCATTTACAATATTTTGACTGTTTTTCAGACTCTGCCATAAGGA +AAGCCATATTAGGACAAGTAGTTAGACGTAGGTGTGACTATCCATCAGGACATAATAAGG +TAGGATCCCTACAATATTTGGCTCTGAAAGCATTAACAACACCAAAAAGGATAAAGCCAC +CTCTGCCTAGTGTTAAGAAATTAACAGAAGATAGATGGAACAAGCCCCAGGAGATCAGGG +GCCACAGAGAGAACCCTACATTGAATGGACATTAGAACTGTTAGAGGAGCTTAAAAATGA +AGCTGTTAGACATTTTCCTAGGACCTGGCTCCATGGCTTAGGACAGTACATCTATAACAC +TTATGGGGATACTTGGGAAGGGGTTCAAGTTATAATAAGAATTTTGCAACAACTACTGTT +TGTTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATACCAGGGAGAAGAGG +CAGGAATGGAGCCAGTAGATCCTAACCTAGAGCCCTGGAAGCATCCGGGAAGTAAACCTG +CAACTAATTGTAACAAGTGTTATTGTAAAAAATGCTGCTGGCATTGTCAACTATGCTTTC +TGAAAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAAGCACCGACGAGGAACTC +CTCAGAGCAGTAAGGATCATCAAAATCCTGTACCAGAGCAGTAAGTAATAAGTATATGTA +ATGTCACCCTTGGAAATTAGTGCCATAGTAGGATTGATAATAGCGCTAATCTTAGCAATA +GTAGTGTGGACTATAGTAGCTATAGAACTTAAGAAAATATTAAGGCAAAGAAAAATAGAT +AAGTTAATTAAGAGAATAAGAGAAAGAGAAGAAGACAGTGGAAATGAGAGTGAAGGGGAC +ACAGATGAGTTGGCCAAACTTGTGGAAATGGGGGACTTTGATCCTTGGATTGGTGATAAT +TTGTAGTGCCTCAGACAACTTGTGGGTTACAGTTTATTATGGGGTTCCTGTGTGGAGAGA +TGCAGAGACCACCCTATTTTGTGCATCAGATGCCAAAGCACATGTGACAGAAGTGCACAA +TGTCTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAAAACTGAA +AAATGTAACAGAAAATTTTAACATGTGGAACAATAACATGGTAGAGCAGATGCATGAGGA +TGTAATCAGTTTATGGGATCAAAGTCTAAAGCCATGTGTAAGGTTAACTCCTCTCTGTGT +TACTTTAAATTGTACTGTTTTGACCAATGGTTCTTTTGAAAATATAACAGAGGAAGTAAA +AAACTGTACTTTTAATATGACCACAGATATAACAGAGGAAGTAAAAAACTGTACTTTTAA +TATGACCACAGACCTAAAAGATAAGAAGCAGAAGGTCTATGCCCTTTTTTATACGCTTGA +TATAGTACCAATTCATCCTAATAGTAATAGTAGCGAGTATAGGTTAACACATTGTAATAC +CTCAGTCATTAAGCAGGCTTGTCCAAAAATAACCTTTGATCCAATTCCTATACATTATTG +TACTCCAGCTGGTTATGTGCTTTTAAAGTGTGATGATAAGAAGTTCAATGGGACAGGGCT +ATGTAAAAATGTCAGCTCAGTACAATGCACACATGGAATTAAGCCAGTGGTATCAACTCA +ACTGCTGTTAAATGGCAGTCTCGCAGAAGAAGAAATAATAATCAGGTCTGAAAATCTCAC +AAACAATGCTAAAACCATAATAGTGCACTTTAATGAATCTGTAGTAATCAATTGTACCAG +ACCCTCCAACAATACAATAACAGGTATACATATAGGACCAGGACAAATGTTCTATAGAAC +AGGAGAGATAAAAGGGGATATAAGAAAAGCATATTGTGAAATTAATGGAACAGAATGGAA +TAAAGTTTTAAAACAGGTAGCTGGAAAACTAGAAGAGCACTTTAATAATAAGAGCATAAG +ATTTCAACCACATTCAGGAGGAGATCTAGAAATTACAACACATCATTTTAATTGTAGAGG +GGAATTTTTCTATTGCAACACAACAGGACTGTTTAATAGAACTTACAAAGACAAGAACTG +TATTGAGGGGTGTGATAACACTACTAACATCATACTCCCATGCAGGATAAAACAAATTGT +AAGAATGTGGCAAGAAGTAGGACAAGCAATGTATGCCCCTCCCATCAGTGGAATAATTAA +TTGTGTATCAAATATTACAGGAGTACTATTGACAAGAGATGGTGGTCAGAATGAGAGTGA +GACTATTGAGACCTTCAGACCTGGAGGAGGAAATATAAAGGACAATTGGAGAAGTGAATT +ATATAAATATAAAGTAGTACAAATTGAACCACTAGGAATAGCACCCACCAGGGCAAAGAG +AAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTATGATCTTTGGGTTCTT +AGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACA +ATTATTGTCTGGTATAGTGCAACAGCAAAGTAATTTGCTGAGAGCTATAGAGGCGCAACA +GCATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTCT +GGAGAGATACCTAAAAGATCAAAAGTTCCTAGGACTTTGGGGCTGCTCTGGAAAAATCAT +CTGCACCACTGCTGTGCCCTGGAACTCCTCTTGGAGTAATAAATCTTATGAAGAGATTTG +GGACCACATGACATGGATACAATGGGAGAGGGAAATTAGCAATTACACAAACCAAATATA +TGATATACTCACAGGATCACAGAACCAGCAGGACAAGAATGAACAGGATCTGTTAGAATT +GGACAAATGGGCAAGTCTGTGGAATTGGTTTGACATAACAAACTGGCTATGGTATATAAA +AATATTTATAATAATAGTAGGAGGTTTAATAGGTTTAAGAATAATTTTTGCTGTGCTTTC +TATAGTAAATAGAGTTAGGCAGGGATACTCACCTTTGTCTTTCCAGACCCCTATCCACCA +GCAGAGGGAACCCGACAGACCCGAAGAAACCGAAGAAGGAGGTGGCGAGCAAGGCAGAGG +CAGATCCGTGCGATTAGTCAGCGGATTCTTAGCACTTGCTTGGGACGATCTACGGAGCCT +GTGCCTCTTCAGTTACCACCTCTTGAGAGACTCCATATCGATTGCAAAGAGGACTGTGGA +ACTTCTGGGACGCAGCAGTCTCAAGGGACTGAGACGGGGCTGGGAGGGCCTCAAATATCT +GGGGAATCTTCTGGTATATTGGGGACAGGAACTGAAAATTAGTGCTATTTCTTTGCTTGA +TACTACAGCAATAGCAGTAGCGGGGTGGACAGATAGGGTTATAGAAGTAGTACAAAGAGT +TTGGAGAGCCTTTCTCCATATACCTAGAAGAATCAGACAGGGCTTAGAAAGGGCTTTGCA +ATAACATGGGAGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGGTCAGGGAAA +GAATAAGGCGAACTCCACCAGCAGCAGAAGGAGTAGGAGCAGTATCTCAAGATTTAGCTA +AACATGGAGCAGTAACAAGTAGTAATATGAATAATGCTGATAGTGTCTGGCTAAGAGCAC +AAGAGGAAGATGATGAGGGGGTAGGCTTTCCAGTCAGGCCACAGGTACCTCTAAGACCAA +TGACTTTTAAGGCAGCTTTTGATCTTAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGATG +GGCTAATTTACTCCAAGAAAAGACAAGAGATCCTTGATTTATGGGTCTATCATACACAAG +GCTTCTTCCCTGACTGGCACAACTACACACCAGGACCAGGGACCAGATTCCCACTGTGTT +TTGGATGGTGCTTCAAGCTAGTACCACTTGACTCAAGAGAAGTAGAAGAGGACACCAAAG +GAGAAAACACCTGCCTGTTACACCCCATGAGCCAACAGGGGCAAGATGATGAAGACCGAG +AAGTGCTAATGTGGCAGTTTGACAGTGCCCTAGCACGAAGACACATAGCCCGAGAACAAC +ACCCAGAGTTCTATAAAGACTGCTGACAGAGAAGTTTCTAACTAGTGACANAGAAGTTTC +TAACTAGGACTTCCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCGGGGCGGAGTTGGGGA +GTGGCTAACCCTCAGATGCTGCATAAAAGCAGCCGCTTTCCGCTTGTACTGGGTCTCTCT +TGTTAGCCCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAGGGGAACCCACTGCTTAAGCC +TCAAGCAGTGGGTTCCC +>CRF01_AE.LA.2011.0.VI50F3912.MG760424 MG760424 +CCCCATGAGCCAGCATGGAATGGAGGGCGAAGAGAGAGAAGTGCTGATATGGAAGTTTGA +CAGTGCCCTAGCACGACAACACATAGCCCGAGAGAAGCATCCGGAGTTCTATAAAGACTG +CTGACAAAGAAGTTTCTGACTAGGACTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGTCG +GGGCGGAGTTGGGGAGTGGCTAACCCTCAGATGCTGCATAAAAGCAGCCGCTTTCTGCTT +GTACTGGGTCTCTCTTGTTAGACCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAGGGGAA +CCCACTGCTTAAAGCCTCAATAAAGCTTGCCTTGAGTGCTTAAAGTGGTGTGTGCCCATT +TGTGTCAGGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGACTGAGTAAAAATCTC +TAGCAGTGGCGCCCGAACAGGGACTTGAAAGTGAAAGTTAATAGGGACTCGAAAGCGGAA +GTTCCAGAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGC +GAGAGCGGCGACTGGTGAGTACGCCAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGAT +GGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTAGGTT +ACGGCCAGGAGGAAAGAAAAAATATAAAATAAAACATTTAGTATGGGCAAGCAGAGAATT +AGAGAGGTTTGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATAAT +AGAACAGTTACAGGCAAATCTCAAGACAGGATCAGAAGAACTTAAATCATTATTTAATAC +AGTAGTAACCCTCTGGTGCGTACACCAAAGGATAGAAGTAAAAGACACCAAGGAAGCTTT +AGATAAAGTAGAGGAAGTACAAAAGAAGAGCCAGCAAAAGACACAGCAGGCAGCAGCTGA +CAAGGGAAACAGCGGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCA +GATGGTACATCAGCCTATATCACCTAGAACTTTGAATGCATGGGTGAAAGTAGTAGAAGA +AAAGGGTTTTAATCCAGAAGTAATACCCATGTTCTCAGCATTATCAGAGGGAGCCACCCC +ACAAGATTTAAATATGATGTTGAATATAGTGGGGGGGCACCAGGCAGCAATGCAAATGTT +AAAAGAAACCATCAATGAGGAAGCTGCAGATTGGGATAGGGCACACCCAGTACATGCAGG +GCCTATTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAG +TACCCTTCAAGAACAAATAGGATGGATGACAAACAATCCACCTATCCCAGTGGGAGACAT +CTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACTAG +CATTTTGGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGATTCTA +TAAAACTCTCAGGGCAGAACAAGCTTCACAGGAAGTAAAAAATTGGATGACAGAAACTTT +GCTAGTCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGAGC +TACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAG +GGTTTTGGCTGAGGCAATGAGCCATGTACAACAGGCAAATGTAATGATGCAGAGAGGCAA +TTTTAAGGGCCAGAGAAAAATTAAGTGCTTCAACTGTGGCAAAGAAGGACACCTAGCCAG +AAATTGCAGGGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGACAGGAAGGACATCAAAT +GAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAGATTTTGGCCTTCCAACAAGGG +AAGGCCAGGGAATTTTCCTCAGAGCAGACCAGAGCCATCAGCCCCRCCAGCRGAAAACTG +GGGGATGGGGGAAGAGATGAACAAGGAACCCTCTCCTCCTTCAGTTTCCCTCAAATCACT +CTTTGGCAACGACCCCTTGTYACAGTAAAAATAGGAGGACAGCTGAAAGAAGCTCTATTA +GATACAGGAGCAGATGATACAGTATTAGAAGAGATAAATTTGCCAGGAAAATGGAAACCA +AAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGGCAATATGATCAAATACYTATA +GAAATTTGTGGAAAAAAGGCTATAGGTACAGTRTTAGTAGGACCTACACCTGTCAACATA +ATTGGACGAAATATGTTGACTCAGATTGGTTGTACTCTAAATTTCCCCATTAGTCCTATT +GACACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGACCAAAGGTTAAACAGTGGCCA +TTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAAGAGATGGAAGAGGAAGGA +AAAATCTCAAAAATTGGGCCTGAGAATCCATACAATACTCCAGTATTTGCTATAAAGAAG +AAGGACAGCACTAAATGGAGGAAATTAGTAGATTTCAGAGAGCTCAATAAAAGAACTCAG +GACTTTTGGGAAGTTCAATTAGGAATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCA +GTAACAGTACTAGATGTGGGAGATGCATATTTTTCAGTTCCTTTAGATGAAAACTTTAGA +AAATATACTGCATTCACCATACCTAGTATAAACAATGAGACACCAGGAATCAGATATCAG +TACAATGTGCTGCCACAGGGATGGAAAGGATCACCGGCAATATTCCAGAGTAGCATGACA +AAAATCTTAGAGCCCTTTAGAATAAAAAATCCAGACATAGTTATCTATCAATACATGGAT +GACTTATATGTAGGATCTGATTTAGAAATAGGGCAGCACAGAACAAAAATAGAGGAGCTA +AGAGCTCATCTATTGAGCTGGGGATTTACTACACCAGATAAAAAGCATCAGAAGGAACCC +CCATTCCTTTGGATGGGATATGAACTCCATCCTGATAGATGGACAGTCCAGCCTATAGAA +CTGCCAGAAAAGGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAAT +TGGGCAAGTCAAATTTATGCAGGGATAAAAATAAAGCAACTGTGTAAACTCCTCAGGGGA +ACTAAAGCACTAACAGAAGTAGTACCACTAACTGAAGAAGCAGAATTAGAATTGGCAGAG +AACAGGGAGATTCTAAAAACCCCTGTGCATGGAGTATATTATGACCCATCAAAAGACCTA +GTAGCAGAAGTACAGAAACAAGGGCAGGACCAATGGACATATCAAATTTATCAAGAGCCA +TTTAAGAATCTAAAAACAGGAAAATATGCCAGAAAAAGGTCTGCTCACACTAATGATGTA +AGACAATTAACAGAAGTGGTGCAAAAAATAGCCACAGAAAGCATAGTTATATGGGGAAAG +ACCCCTAAATTTAGACTACCCATACAAAGAGAAACATGGGAAACATGGTGGATGGAGTAT +TGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTTAATACCCCTCCTCTAGTAAAACTA +TGGTACCAATTAGAAAAAGACCCCATAATAGGAGCAGAGACTTTCTATGTAGATGGGGCA +GCTAGTAGGGAGACTAAGCTAGGAAAAGCAGGATATGTCACTGACAGAGGAAGGCAAAAG +GTAATTTCCCTAACTGAGACAACAAATCAAAAGACTGAATTACACGCGATCCATTTAGCC +TTGAAGGACTCAGGATCAGAAGTAAATATAGTAACAGATTCACAATATGCATTAGGAATC +ATTCAGGCACAACCAGACAGGAGTGAATCAGAAGTAGTCAACCAAATAATAGAGGAGCTA +ATAAAAAAGGAAAAGGTCTACCTATCATGGGTTCCAGCACATAAAGGGATTGGAGGAAAT +GAACAAGTAGATAAATTAGTCAGTTCAGGAATCAGGAAGGTACTGTTTTTAGATGGGATA +GATAAGGCTCAAGAAGAACATGAAAGATATCATAGCAATTGGAGAACAATGGCTAGTGAT +TTTAATTTGCCACCTATAGTAGCAAAGGAAATAGTAGCCAACTGTGATAAATGTCAATTA +AAAGGGGAAGCCATGCATGGACAAGTGGACTGCAGTCCAGGAATATGGCAACTAGATTGC +ACACATCTAGAAGGAAAAGTCATCCTGGTAGCAGTCCACGTGGCCAGTGGATATATAGAA +GCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTTCTGCTAAAGTTAGCA +GGAAGATGGCCAGTAAAAGTAATACACACAGACAATGGTAGTAATTTCACCAGCGCTGCA +GTTAAAGCAGCCTGTTGGTGGGCCAATGTCCGGCAGGAATTTGGGATCCCCTACAATCCC +CAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGCAAATCATAGGAAAGGTA +AGAGATCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTT +AAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCA +ACAGACATACAAACTAAAGAATTACAAAAGCAAATTACAAAAATTCAAAATTTTCGGGTT +TATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGT +GAAGGGGCAGTAGTAATACAGGACAATAGTGATATAAAAGTAGTACCAAGAAGAAAAGCA +AAGATCATTAGAGACTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAG +GATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCATATGTATGTCTCAAAGAAAAC +TAAAAAGTGGTCTTATAGACATCATTATGAAAGCCAGCATCCAAAGGTAAGTTCAGAAGT +GCATGTCCCACTAGGAGAGGCTATCTTAGTAATAAGAACATATTGGGGACTACAGACAGG +AGAAAAGGACTGGCAGTTGGGTCATGGAGTCTCCATAGAATGGAGACAGAGAACATATAG +TACACAAATAGATCCTGACCTAGCAGACCAACTGATTCATCTACACTATTTTGACTGTTT +TTCAGACTCTGCCATAAGAAAAGCCATATTAGGACAAGTAGTTAGACATAGGTGTGAATA +TCCATCAGGACATAACAAGGTAGGATCCCTACAATATTTGGCACTGAAAGCATTAACAAC +ACCAAAAAGAATAAGGCCACCTCTGCCTAGTGTTAAGAAATTGACAGAAGATAGATGGAA +CAAGCCCCAGAAGATCAAGGACCACAGAGAGAACCCCACAATGAATGGACATTAGAACTG +TTAGAGGAGCTTAAAAATGAAGCTGTCAGACATTTTCCTAGGCCTTGGCTCCATGGCTTA +GGACAGTACATTTATTACACTTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGA +GTTTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGC +ATTATACCAGGGAGAAGAGGCAGGAATGGAGCCAGTAGATCCTAACCTAGAGCCCTGGAA +TCATCCGGGAAGTCAGCCTACAACTGCTTGTAACAATTGTTACTGTAAAAAWTGTTGCTG +GCATTGCCAACTATGCTTTCTGAAAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCG +GAAGCACAGACGAGGAACTCCTCAGAGCCGTGAGRATCATCAATATCCTATACCAGAGCA +GTAAGTACTAAGTATATGTAATGTTACCTTTGGAAATTAGTGCAATAGTAGGACTGGTAG +TAGCTTTAATAGCAGCAATAGTAGTGTGGACTATAGTAGCTATAGAATTTAGGAGAATAC +TAAGGCAAAGAAAAATAGACAGRTTAGTTAAGAGAATAAGGGAAAGAGMAGAAGACAGTG +GAAATGAGAGTGAAGGAGACACAGATGARTTGGCCAAACTTGTGGAAATGGGGGACTTTG +ATCCTTGGGTTGGTGATAATTTGTAGTGCCTCAAACAACTTGTGGGTTACAGTTTATTAT +GGGGTTCCTGTGTGGAGAGATGCAGATACCACTCTATTTTGTGCATCAGATGCCAAAGCA +CATGAGACAGAAGTGCACAATGTCTGGGCCACACATGCCTGTGTACCCACAGACCCCAAC +CCACAAGAAATACACCTGGAAAATGTAACAGAAAATTTTAACATGTGGAAAAATAACATG +GTAGAGCAGATGCAGGAGGATATAATCAGTTTATGGGATGAAAGTCTAAAGCCATGTGTA +AAGTTAACTCCTCTCTGTGTTACTTTAAATTGTACCAATGRAAYCAAKGTCAGGAATGGA +ACCGAGGCCAACAACATAACAGGAACTAACATAACAGAAACAGATGAAGTAAAAAACTGT +ACTTTTAATGTAACCACAGAAATAAGGGATAAGAAGCAGAAGGTCCGTGCACTTTTTTAT +AAGCTTGATGTAGTACAAATGGGGAATAAGAGTAATGAGTATAGGTTAATAAATTGTAAT +ACTTCAGTCATTAAGCAGGCTTGTCCAAAGATATCCTTTGATCCAATTCCTATACATTAT +TGTACTCCAGCTGGTTATGTGATTTTAAAGTGTAATGAAAAGGATTTCAATGGGACAGGA +CCATGTAAAAATGTCAGCTCAGTACAATGCACACATGGAATTAAGCCAGTGGTATCAACT +CAATTGCTGTTAAATGGCAGTCTAGCAGAAGGCAAGATAATAATCAGATCTGAAAACCTC +ACAAACAATGCTAAAACCATAATAGTGCACCTTAATAAATCTGTAGAAATCAATTGTACC +AGACCCTCCAACAATAGAAGAACAAGTGTACGTATAGGACCAGGACAAGTATTCTATAGA +AATGGAGAAATAATAGGAGATATAAGAARAGCATCTTGTGAGGTTAATAGAACAGAATGG +AATAAAGTTTTAAAACAGGTAAAGCAAAGGTTAAGAGAGCACTTTAATAAGAATATAACC +TTTAAACCAYCTTCAGGAGGAGATCTAGAAGTCACAATGCATCATTTTAATTGTAGAGGG +GAATTTTTCTATTGTAATACAACACAACTGTTTAATAATATTGTTAATAATRCTAACAAT +AMTGGAACTATCAGACTTCCATGCAAAATAAAGCAAATTATAAACATGTGGCAGGAAGTA +GGGCAAGCAATGTATGCTCCTCCCATCAGTGGGAAAATTAATTGCATATCAAACATTACA +GGAATACTATTGACAAGAGATGGTGGTAATGCTAGTGGTAATGCTAGCGAGGAGATCTTC +AGACTTACAGGAGGAAATATAAAGGACAATTGGAGAAATGAATTATATAAATATAAAGTA +GTACAAATTGATCCACTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTAGTGGAGAGA +GAAAAAAGAGCAGTGGGAATAGGAGCTATGATCTTTGGGTTCTTAGGAGCAGCAGGAAGC +ACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATA +GTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCGCAGCAGCATCTGTTGCAACTC +ACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAA +GATCAAAGGTTCCTAGGACTTTGGGGCTGCTCTGGAAAAACCATCTGCACCACTGCTGTG +CCCTGGAACTCCACTTGGAGTAATAAATCTTTTGATGAGATTTGGAACAACATGACATGG +ATAGAATGGGAAAGAGAAATTAGCAATTACACAAGTCAAATCTATGAGATACTTACAGAA +TCGCAGAACCAGCAGGAAARGAATGAAAAGGAGTTGTTAGAATTGGATAAGTGGACAAGT +CTGTGGAATTGGTTTGACATATCAAATTGGCTGTGGTATATAAAAATATTTATAATGATA +GTAGGAGGTTTAATAGGTTTAAGAATAATTTTTGCTGTGCTTTCTATAGTAAATAGAGTT +AGGCAGGGATACTCACCTTTGTCCTTCCAGACCCCTACCCATCATCAGAGGGAGGAACCC +GACCGACCCGGAAGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAGACAGATCAGTGAGA +TTAGTGAGCGGATTCTTAGCACTTGTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCAGC +TACCACCGCTTGAGAGACTTCACCTTGATTGCAGCGAGGACTGTGGAACTTCTGGGACAC +AGCAGTCTCAAGGGACTGAGACGGGGGTGGGAAGGCCTCAAATATCTGGGGAATATTCTG +TTGTATTGGATCCAGGAACTAAAAACTAGTGCTATTTCTTTGTTTGATACTATAGCTATA +GCAGTAGCGGGGTGGACCGATAGGGTTATAGAAGYAGCACAAGGAGCTTGGAGAGCCATT +CTCCTCATACCTAGAAGAATCAGACAGGGCTTAGAAAGGGCTTTGCTATAACATGGGAGG +CAAGTGGTCAAAATGGCCTCAGGTCAGGGAAAGAATAAGACAAACTCCTCCAGCAGCAGA +AGGAGTAGGAGCAGTATCTCAAGATCTAGCTAAACATGGAGCAGTAACAAGTAGTAATAT +GAATAATGCTGATGATGTCTGGGTGAGAACACAAGAGGAAGAAGAGGAGGTAGGCTTTCC +AGTCAGGCCCCAGGTGCCCCTGAGACCAATGACTTATAAGGAAGCTTTTGATCTTAGCTT +CTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAGTTTACTCCAAGAAAAGACAAGAGAT +CCTTGATTTATGGGTCTATAATACACAGGGCTTCTTCCCTGACTGGCAWAACTACACACC +AGGGCCAGGGRTCAGATACCCACTGTGTTTTGGATGGTGCTTCAAGTTAGTACCAGTTGA +CCCAAGAGAAGTAGAGGAGGACAACAAAGGAGAAAACAACAGCCTGTTACACCCCATGAG +CCAGCATGGAATGGAGGACGAAGAGAGAGAAGTGCTGATATGGAAGTTTGACAGTGCCCT +AGCAAGACAACACATAGCCCGACAGAAGCATCCGGAGTTCTATAAAGACTGCTGACAAAG +AAGTTTCTGACTAGGACTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGTCGGGGCGGAGT +TGGGGAGTGGCTAACCCTCAGATGCTGCATAAAAGCAGCCGCTTTCTGCTTGTACTGGGT +C +>CRF01_AE.TH.2008.0.AA067a_WG12.JX447458 JX447458 +TGGTAACTAGAGATCCCTCAGACCACTCTAGACTGAGTAAAAATCTCTAGCAGTGGCGCC +CGAACAGGGACTTGAAAGCGAAAGTTAATAGGGACTCGAAAGCGAAAGTTCCAGAGAAGT +TCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGCGGCGACT +GGTGAGTACGCCAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGT +CAGTATTAAGTGGGGGGAAATTAGATGCATGGGAAAAAATTCGGTTACGGCCAGGGGGAA +GGAAAAAATATAGAATGAAACATTTAGTATGGGCAAGCAGAGAGTTAGAAAGATTCGCAC +TTAACCCTGGCCTGTTAGAAACAGCAGAAGGATGCCAACAAATCATAGAACAGTTACAGT +CAACTCTCAAGACAGGATCAGAAGAACTTAAATCCTTATTTAATACAGTAGTAACCCTCT +GGTGTGTACACCAAAGGATAGAGGTAAGAGACACCAAGGAAGCTTTAGATAAAATGGAGG +AAGCACAAAAGAGGAGCCAGCAAAAGACACAGCAGGCAGCAGCTGGCACAGGAAGCAGCA +GCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATGGTACATCAGC +CCGTATCACCTAGAACTTTGAATGCATGGGTAAAAGTAGTAGAAGAGAAGGGTTTTAACC +CAGAAGTAATACCCATGTTCTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAATA +TGATGCTAAATATAGTGGGGGGACACCAGGCAGCAATGCAAATGTTAAAAGAAACCATCA +ATGAGGAAGCTGCAGAATGGGATAGGGTACACCCAGTACATGCAGGGCCTATTCCACCAG +GCCAGATGAGGGAACCAAGAGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAAC +AAATAGGGTGGATGACAAGCAATCCATCTATCCCAGTGGGAGACATCTATAAAAGGTGGA +TAATCCTGGGATTAAATAAGATAGTAAGAATGTATAGCCCTGTTAGCATCTTGGACATAA +GACAAGGGCCAAAGGAACCCTTCAGAGACTATGTAGATAGATTCTATAAAACTCTCAGAG +CTGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACCTTGCTAGTCCAAAATG +CGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGAGCTACATTAGAAGAAA +TGATGACAGCATGCCAGGGGGTAGGAGGACCTAGCCATAAAGCAAGGGTTTTGGCTGAGG +CAATGAGCCAAGCACAAGCACAAAATGTAAATATACTGATGCAGAGAGGCAATTTTAAGG +GCCAAAAAAGAATTAAATGCTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAACTGCA +GGGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACT +GCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAAGGGAAGGCCGGGAA +ATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCTGCAGAAAACTGGAGGATGGAGG +AAGAGAGGACCTCCTTACAGAAGCAGGAACAGAAAGACAAGGAACATCCTCCTCCCTTAG +TTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAGTAAAAATAGAAGGACAGTT +GAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTGGAAGATATAAATTTGCC +AGGAAAGTGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTAAGGCAATA +TGATCAGATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTATTAGTAGGACC +TACGCCTGTCAACATAATTGGACGAAATATGTTGACTCAGATTGGTTGTACCTTAAATTT +CCCAATTAGTCCTATTGACACTGTACCAGTAACATTAAAGCCAGGAATGGATGGACCAAA +GGTTAAACAGTGGCCACTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAAGA +GATGGAAGAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGT +ATTTGCTATAAAGAAAAAGGACAGCACCAAATGGAGGAAATTAGTAGATTTCAGAGAGCT +CAATAAAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCGCATCCAGCAGGTTT +AAAAAAGAAAAAATCAGTGACAGTACTAGATGTGGGAGATGCATATTTTTCAGTTCCTTT +GGATGAAAGCTTTAGAAAGTATACTGCATTCACCATACCTAGTACAAACAATGAGACACC +AGGAATTAGATATCAATACAATGTGCTGCCACAGGGATGGAAGGGATCACCGGCAATATT +CCAGAGCAGCATGACAAAAATCTTAGAGCCCTTTAGAATAAAAAATCCAGAAATGATTAT +TTATCAATACATGGRTGACCTGTATGTAGGATCTGATTTAGAAATAGGGCAGCACAGAAT +AAAAATAGAGGAGCTAAGAGCTCATCTATTGAGCTGGGGATTTACTACACCAGACAAAAA +GCATCAGAAGGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGACAAATGGAC +AGTCCAACCTATAGAACTGCCAGAAAAAGACAGCTGGACTGTCAATGATATACAGAAATT +AGTGGGAAAACTAAATTGGGCCAGTCAAATTTATGCAGGGGTTAAGGTAAAGCAACTGTG +TAAACTCCTCAGGGGAGCTAAGGCACTAACAGACATAGTACCATTGACTGAAGAAGCAGA +ATTAGAATTGGCAGAGAACAGGGAGATTCTAAAAACCCCTGTGCATGGAGTATATTATGA +CCCATCAAAAGACTTAGTAGCAGAAGTACAGAAACAAGGGCAGGACCAATGGACATATCA +AATTTATCAAGAGACATTTAAAAATCTGAAAACAGGAAAATATGCAAGAAAAAGGTCTGC +TCACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAAATAGCCACAGAAAGCAT +AGTAATATGGGGAAAGACCCCTAAATTTAGATTACCCATACAAAGAGAAACATGGGAAAC +ATGGTGGACGGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAATTTGTCAATACCCC +TCCTCTAGTAAAATTATGGTACCAATTAGAAAAAGACCCCATAGTAGGAGCAGAGACTTT +CTATGTAGATGGGGCAGCTAATAGGGAAACTAAGCTAGGAAAAGCAGGGTATGTCACTAA +CAAAGGAAGGCAAAAGGTAGTTTCCCTAACTGAGACAACAAATCAAAAGACTGAATTACA +TGCAATCTACTTAGCCTTGCAGGATTCAGGAGCAGAAGTCGATATAGTAACAGACTCACA +ATATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGAATCAGAAGTAGTCAACCA +AATAATAGAGGAACTAATAAAAAAGGAAAAAGTCTACCTGTCATGGGTACCAGCACACAA +AGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCAGGAAYCAGGAAGGTACT +ATTTTTAGATGGGATAGATAAGGCTCAAGAAGAACATGAAAGATATCACAGCAATTGGAG +AGCAATGGCTAGTGATTATAATTTGCCACCTGTAGTAGCAAAGGAAATAGTAGCCAACTG +TGATAAATGTCAGCTAAAAGGGGAAGCTATGCATGGACAAGTAGACTGTAGTCCAGGGAT +ATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTCATCCTGGTAGCAGTTCACGTGGC +CAGTGGATATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTT +TCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAATACACACAGACAACGGTAGCAA +TTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCCAATGTCCGACAGGAATTTGG +GATCCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAA +AATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGT +ATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAAT +AATAGACATAATAGCAACAGACATACAAACTAGAGAATTACAAAAACAAATTACAAAAAT +TCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAA +ACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGACAATAGTGATATAAAAGTAGT +ACCAAGAAGAAAAGCAAAAATCATCAGGGATTATGGAAAACAGATGGCAGGTGATGATTG +TGTGGCAGGTAGACAGGATGAGGATTAAAACATGGAACAGTATAGTAAAACATCATATGT +ATATCTCAAAGAAAGCTAAAAAGTGGTCTTATAGACATCATTATGAAAGCCAGAATCCAA +AAGTAAGTTCAGAAGTACACATCCCACTAGAAGAGGCAAAATTAGTAATAAAAACATATT +GGGGTCTGCAGACAGGAGAAAAGGACTGGCAATTGGGTCATGGAGTCTCCATAGAATGGA +GGCAGAGAAACTATAGCACACAAATAGATCCTGACCTAGCAGACCGACTGATTCATCTAC +AATATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAAGCCATATTAGGACAAGTAGTTA +GACGTAGGTGTGAATATCCATCAGGACATAACAAGGTAGGATCCCTACAATATTTGGCAC +TGAGAGTATTRACGACACCAAAAAAGATAAAGCCACCTCTGCCTAGTGTGRAGAAATTAA +CAGAAGATAGATGGAACAAGCCCCAGAGGATCAGGGGCCACAGAGAGAACCCCACAATGA +ATGGGCATTAGAACTGTTAGAGGAACTTAAAAATGAAGCTGTGAGACACTTTCCTAGGCC +CTGGCTCCATGGCTTAGGACAGTACATCTATAATAATTATGGGGATACTTGGGAAGGGGT +TGAAGCTATAATAAGAATTTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCA +ACATAGCAGAATAGGCATTATGCCAGGGAGAAGAGGCAGGAATGGAGCCGGTAGATCCTA +ACCTAGAGCCCTGGAATCATCCGGGAAGTCAGCCTACAACTAATTGTAGCAATTGTTACT +GTAAAAAATGTTGCTGGCATTGCCAACTATGCTTTCTGAAAAAAGGCTTAGGCATCTCCT +ATGGCAGGAAGAAGCGGAAGCACCGACGAAGAACTCCTCAGAACAGTAAAGATCATCAGA +ATCCTATACGAAAGCAGTAAGTAATAAGTATATGTAATGACACCTTTGGAAATTAGTGCA +ATAGTAGGACTGATAGTAGCTCTAATCTTAGCAATAGTAGTGTGGACTATAGTAGCTCTA +GAATATAAGAAAATACTAAGGCAAAGAAAAATAGACAGGTTAATTAAGAGAATAGGAGAA +AGAGCAGAAGACAGTGGAAATGAAAGTGAAGGGGATATGGATGACTTGGCCAAACTTGTG +GAGATGGGTGACTTTGATCATTGGGTTGGTGATAATTAGTAGTGCCTCAGACAACTTGTG +GGTTACAGTTTATTATGGAGTTCCTGCGTGGAAAGATGCAAATACCACCCTATTTTGTGC +ATCAGATGCCAAGGCACATGAAACAGAAGTGCACAATGTCTGGGCCACATATGCCTGTGT +ACCCACAGATCCCAACCCTCAAGAAATACCCATGGAAAATGTAACAGAAAATTTTCACAT +GTGGAAAAATAACATGGTAGAGCAGATGCAGGAGGATGTAATCAGTTTATGGGATGAAAG +TCTAAAGCCATGTGTGAAGTTAACCCCTCTCTGCGTTACTTTAAATTGTACCGAGGCTAA +AATTACTTGTAATTCCACTGTCACTTCCAATATCACTTCCAATAACACTTGCATAGAATT +CATAAAAAATGAAGTAAAAAATTGTTCTTTTAATATGACCACAGAAGTGACAGATAAGAA +GAAGCAGGTCCATGCACTTTTTTATAGGCTTGATATAGTACAGATGGGAGATGAGAGTAC +GTATAGGTTAATAAATTGTAATACTTCAGTCATTAAGCAGGCTTGTCCAAAGATATCCTT +TGATCCAATTCCTATACATTATTGTACTCCAGCTGGTTATGCGATTCTAAAGTGTAATGA +GAAGAATTTCACTGGGACAGGGCCATGTAAAAATGTCAGCTCAGTACAATGCACACATGG +AATTAAGCCAGTGGTATCAACTCAATTGCTGTTAAATGGCAGCCTAGCAGAAGAGGAGAT +AGTAATCAGATCTGAAAATCTCACAAACAATGTCAAAACCATAATAGTACACCTTAATAA +ATCTGTAGAAATCAGTTGTACTAGACCCTCCAACAATACAAGAACAAGTATATCTATAGG +ACCAGGACGAGCATTCTATAGAATAGGAGACATAACAGGAGATGTAAGGAAAGCATATTG +TGAGATTAATGGAACAAAATGGAATGAAACTTTAAAGCAGGTAGCTGGAAAATTAAAAGA +GTACTTTAATAAGACAATACTCTTTGAACCACCCTCAGGAGGAGATCTAGAAATTACAAT +GCATCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACAACAAAATTGTTTAATAG +TACAGAAAATGGGACCAAGGAGGAGTTTAAGGGCACTAATGGCACTATCATACTTCCATG +CAAGATAAAGCAAATTGTAAGAATGTGGCAGGGAACAGGGCAAGCAATGTATGCTCCTCC +CATCAGTGGAGCAATTAATTGTGTATCAAATATTACAGGAATACTATTAACAAGAGATGG +TGGTAATGCTAATAACTCTAACTCTACTGAGAACTCTACTGAGATATTCAGACCTGGAGG +AGGAGATATAAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAATACAAATTGA +ACCACTAGGAATAGCACCCACCAAGGCAAGAAGAAGAGTGGTGGAGAGAGAGAAAAGAGC +AGTGGGAATAGGAGCTATGATCTTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGC +GGCGTCAATAACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCA +AAGCAATTTGCTGAGGGCTATAGAGGCGCAGCAGCATATGTTGCAACTCACAGTCTGGGG +CATTAAACAGCTTCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAAGATCAACAGTT +CCTAGGACTTTGGGGCTGCTCTGGAAAAGTCATCTGCACCACTAATGTGCCCTGGAACTC +CACTTGGAGTAATAAATCTTTGAGTGAGATTTGGGAAAACATGACATGGGTAGAATGGGA +GAGAGAAATTAGCAATTACACAAGACAAATATATGAGATACTCACAGAATCGCAGAACCA +GCAGGATAAGAATGAAAAAGATTTGTTAGAGTTGGACAAATGGGCAAGTCTGTGGAATTG +GTTTAGCATAACAAAATGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTT +AATAGGTTTAAGAATAATCTTTGCTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATA +CTCACCTTTGTCTTTCCAGATCCCTTCCCATCATCAGAGGGAACCCGACAGGCCCGAAAG +AATCGAAGAAGGAGGTGGCGAGCAAGGCAGAGGCGGATCAGGGAGATTAGTGAGCGGATT +CTTATCACTTGCCTGGGACGACCTACGGAGCCTGTGCCTCTTCTGCTACCACCTCTTGAG +AGACTTCATCTTGATTGCAGCGAGGACTCTGAGCACGGGACTGAGACGGGGGTGGGAAGT +CCTCAAATATCTGGGGAATCTTCTGTTATATTGGAGCCAGGAACTAAAAATTAGTGCTAT +TTCTTTGTTTGATGCTACAGCAATAGCAATAGCGGGGTGGACAGATAGGGTTATAGAAGT +AGTGCAAAGAGCTTGCAGAGCTGTTCTCCACATACCTAGAAGAATCAGACAGGGCTTAGA +AAGGGCTTTGCTATAACATGGGAGGCAAGTGGTCAAAAAGTAGCATAGTGGGATGGCCTC +AGGTCAGGGAAAGAATAAGGCGAACTCCTCCAGCAACAAAAGAAGTAGGAGCAGTATCTC +AAGATCTAGATAAACATGGAGCAATAACAAGTAGTAATATAACTAATGAGGATTGTGGCG +GGCTGAGAGCACAAGAGGAAGAGGACGAAGGAGTAGGCTTTCCAGTCAGGCCGCAGGTAC +CTTTAAGACCAATGACTTTTAAGGGAGCTTTTGATCTTAGCTTCTTTTTAAGAGAAAAGG +GGGGACTGGAGGGGCTAATTTACTCCAAGAGAAGACAAGAAATCCTTGACTTATGGGTCT +ATCATACACAAGGCTACTTCCCTGATTGGCACAACTATACACCAGGGCCAGGAATCAGAT +ACCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAAGAGAAGTAGAGG +AGGACAACAAAGGGGAAAACAACTGCCTGTTACACCACATGAGCCAGCATGGAATAGAGG +ACGAAGAAGGAGAAGTGCTGATGTGGAAGTTTGACAGCGCCCTAGCACGAAGACACATAG +CCCGAGAACAGCACCCAGAGTTCTATAAAGACTGCTGACAAAGAAGTTTCTAACTGGGAC +TTCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCGGGGCGGAGTTGGGGAGTGGCTAACCC +TCAGATGCTGCATAAAAGCAGCCGCTTTTCGCTTGTACTGGGTCTCTCTTGTTAGACCAG +GTCGAGCCCGGGAGCTCTCTGGCTAACAGGGAACCCACTGCTTA +>CRF01_AE.GB.2014.0.14727_1_60.3.MF109621 MF109621 +ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGG +TTACGGCCAGGGGGAAAGAAAAAATATCACATAAAACATATAGTATGGGCAAGCAGAGAG +TTGGAAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAGCAACTA +ATAGAACAGCTACAGTCAACTCTCCAGACAGGATCAGAAGAACTTAAATCATTATTTAAT +ACAATAGCAACCCTCTGGTGCGTACACCAAAGGATAGAGATAAAAGACACCAAGGAAGCT +CTAGATAAAATAGAGGAAGTACAAAGAAAGAGTCAGCAAAAGACACAGCAGGCAGCGGCT +GGCACAGGAAGCAGCAGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCGCAAGGC +GCAATGGTACATCAAGCCATGTCACCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAA +GAAAAGGGTTTTAACCCAGAAGTAATACCCATGTTCTCAGCACTATCAGAAGGAGCCACC +CCACAAGACATAAATATGATGCTAAATATAGTGGGGGGACATCAGGCAGCAATGCAAATG +TTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGGTTACACCCAGTACATGCA +GGGCCTATTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGATATAGCAGGAACTACT +AGTACCCTTCAAGAACAAATAGGATGGATGACAAGCACTCCACCTATCCCAGTAGGGGAC +ATCTATAAAAGGTGGGTAATCCTGGGATTAAATAAGATAGTAAGAATGTACAGCCCTACT +AGCATTTTGGACATAAAACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTT +TATAAAACTCTCAGGGCAGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACC +TTATTAGTCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGGACAGGA +GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTAGCCATAAGGCA +AGGGTTTTGGCTGAGGCAATGAGCACAGTACAACATACAAATATAATGATGCAGGGAGGC +AATTTTAAGGGCCAGAGAAAAATTAAGTGTTTCAATTGTGGCAAAGAAGGACACCTAGCC +AGAAATTGCAGAGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGGAAAGAAGGACATCAA +ATGAAAGACTGCAATGAAAGACAGGCTAATTTTTTAGGAAGACTTTGGCCTTCCCACAAG +GGAAGGCCAGGGAATTTTCCTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGCAGAAAAC +TGGGGGATGAGGGAAGAGATGACTTCCTCACCGAAGCAGGAGCAGAAAGACAGGGAACCT +TCCTTTAGTTTCCCTCAAATCACTCTTTGGCAACGACCCATTGTTACCGTAAAAATAGGA +GGACAGCTGAGAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATA +AATTTGCCAGGAAAATGGAAACCAAAAATGATAGGAGGAATTGGAGGTTTTATTAAAGTA +AGGCAATATGATCAGATATCTATAGAAATTTGTGGAAAAAAGGCTGAAGGTACAGTGCTA +GTAGGACCTACACCCGTCAATATAATTGGACGAAATATATTGACTCAGCTTGGTTGTACT +TTAAATTTCCCAATTAGTCCTATTGACACTGTACCAGTAACATTAAAGCCAGGAATGGAT +GGACCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAAGCATTAACAGAAATT +TGTGAGGATATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAAT +ACTCCAGTATTTGCCATAAAGAAAAAGGATGGCACCAAATGGAGGAAATTAGTAGATTTC +AGAGAACTCAATAAAAGAACTCAGGATTTTTGGGAAGTTCAATTAGGAATACCACATCCA +GCAGGTTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGAGATGCATATTTTTCA +GTTCCTTTAGATGAAAACTTTAGAAAGTATACTGCATTCACCATACCTAGTACAAACAAT +GAGACACCAGGAATCAGATATCAGTATAATGTGCTACCACAGGGATGGAAAGGATCACCA +GCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGAACAAAAAATCCAGAC +ATGGTTATCTATCAATACATGGATGACTTGTATGTAGGATCTGATTTAGAAATAGGGCAG +CACAGAGCGAAAATAGAGGAGCTAAGAGCTCATCTATTGAGCTGGGGATTTACTACCCCA +GACAAAAAACATCAGAAGGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGAC +AGATGGACAGTCCAGCCTATAGAACTGCCAGAAAAAGACAGCTGGACTGTCAATGATATA +CAGAAATTAGTGGGAAAGCTAAATTGGGCAAGTCAAATTTATGCAGGGATTAAAGTAAAG +CAACTATGTAGACTCCTCAGAGGAACTAAAGCATTAACAGACATAGTACCACTGACTGAA +GAAGCAGAATTAGAGTTGGCAGAGAACAGGGAGATTCTAAAAACCCCTGTGCATGGAGTA +TATTATGACCCAGCAAAAGACTTAGTAGCAGAAGTACAAAAACAAGGGCAGGACCAATGG +ACCTATCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCCAGAAAA +AGGTCTGCTCACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAAATAGCCACA +GAAAGCATAGTGATATGGGGAAGGACCCCTAAATTTAGATTACCTATACAAAGAGAAACA +TGGGAGACATGGTGGACAGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAATTTGTT +AATACCCCTCCTTTAGTAAAATTGTGGTACCAATTAGAAAAAGAACCCATATTAGGAGCA +GAGACTTTCTATGTAGATGGGGCAGCTAGTAGAGAGACTAAGCTAGGAAAAGCAGGGTAT +GTCACTGACAGAGGAAGGCAAAAGGTAATTCATCTAACTGAGACAACAAATCAAAAGACT +GAATTACAGGCGATCCATTTAGCCTTGCAGGATTCAGGATCAGAAGTAAATATAGTAACA +GACTCCCAATATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAGTCAGAAATA +GTCAACCAAATAATAGAGGAGCTAATAAAAAAGGAAAAGGTCTACCTGTCATGGGTACCA +GCACATAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCAGGAATCAGG +AAGGTGCTATTTTTAGATGGAATAGATAAGGCTCAAGAAGAACATGAAAGATATCACAGT +AATTGGAGAACAATGGCTAGTGATTTTAATTTGCCACCTGTAGTAGCAAAGCAAATAGTA +GCCAACTGTGATAAATGTCAACTAAAAGGGGAAGCTATGCATGGACAAGTGGACTGTAGT +CCAGGAATATGGCAATTAGATTGCACGCATCTAGAAGGAAAAGTCATCCTGGTAGCAGTC +CACGTGGCCAGTGGGTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACA +GCATACTTTCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAATACACACAGACAAC +GGTAGCAATTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCCAATGTCCATCAG +GAATTTGGGATCCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAGGAA +TTAAAGAAAATCATAGGGCAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTACAA +ATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGG +GAAAGAATAATAGATATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATT +ACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGA +CCAGCAAAACTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGACAATAGTGATATA +AAAGTGGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGT +GATGATTGTGTGGCAGGTGGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACA +TCATAAATATGTCTCAAAGAAAGCTAGAAAGTGGGTTTATAAACATCACTATGAAAGCCA +GAATCCAAAGGTAAGCTCAGAAATACATATCCCACTAGGAGACTATAATAGTAATAAAAA +CATATTGGGGTCTGCAGACAGGAGAAAAGGACTGGCACTTGGGTCATGGAGTCTCCATAG +AATGGAGGCAGACAAATTATAGCACACAAATAGATCCTGACCTAGCAGACCGACTAATTC +ATCTACAATATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAAGCTACATTAGGACAAG +TAGTTAGACATAGGTGTGAATACCCATCAGGACATAACAAGGTAGGATCCCTACAATATT +TGGCACTGAAAGCATTAACAACACCAAAAAAGATAAAGCCACCTCTGCCTAGTGTTAGGA +AATTAACAGAAGATAGATGGAACAAGCCCCAGAAGACCAGGGACCACAGAGAGAACCCCA +CAATGAATGGACACTAGAACTGTTAGAGGAGCTTAAAAATGAAGCAGTCAGACATTTTCC +TAGGCCATGGCTCCATGGCTTAGGACAATACATTTATAACACTTATGGGGATACTTGGGA +AGGGGTTGTAGCTATAATAAGAATTTTGCAACAACTGCTGTTTGTTCATTTCAGAATTGG +GTGTCAACATAGCAGAATAGGCATTTTGCCAGGGAGAAGAGGCAGGAATGGAGCCGGTAG +ACCCTAACCTAGAGCCCTGGAAACATCCAGGGAGTCAGCCTGCAACCGCTTGTAGCAAGT +GTTACTGTAAAAAATGTGTCTGGCATTGTCAACTATGCTTTCTGAAAAAAGGCTTAGGCA +TCTCCCATGGCAGGAAGAAGCGGAAGCACCGACGCGGAACTTCTCAGAACAGTAAGGATC +ATCAAGACCCTATACGAAAGCAGTAAGTGTATATGCTATGNCTTTAGAAATTAGTGCAAT +AGTAGGACTGGTAGTAGCGCTAATCTTAGCAATAGTAGTGTGGACTATAGTAGGTATAGA +ACTAAGTAAAATACTGAGACAAAGAAAAATAGACAGGATAATTGAAAGAATAAGAGAAAG +GGCAGAAGATAGTGGAAATGAGAGTGAAGGAGACACAGAGGAATTGGCCAAACTTGTGGA +AATGGGGACTTTGATCCTTGGGTTGGTGATGATGTGTAGTGCAGCAAACTTGTGGGTTAC +AGTTTATTATGGGGTTCCTGTGTGGAGAGATGCGGAAACTACCCTATTTTGTGCATCAGA +TGCTAAAGCACATGACACAGAAGCGCACAATGTCTGGGCCACACATGCCTGTGTACCCAC +AGACCCCAACCCACAAGAAATACACATGGAAAATGTAACAGAAAATTTTAACATGTGGAA +AAATAAAATGGTAGACCAGATGCAGGAGGATGTAATCAGTTTATGGGATCAAAGTCTAAA +GCCATGTGTAAAGTTAACTCCTCTCTGTGTTACTTTAAATTGTATCTTCCAGTAGTGTAA +ACAGTAGTAGAAATGAAGTAAGAAACTGTTCTTTTAATATGACCACAGAACTAAGAGATA +AGAGGAAACAGGTCTATGCACTTTTTTATAAGATTGATATAGTACCAATNTATAGGTTAA +TAAATTGTAATACTTCAGTCATTAAGCAGGCTTGCCCAAAGATGTCCTTTGAACCAATTC +CTATACATTATTGTACTCCAGCTGGTTATGCGCTTTTAAAGTGTAATGATAAAAATTTTA +ATGGGACAGGGCCATGTAAAAATGTCAGTTCAGTACAATGCACACATGGAATTAGGCCAG +TAGTATCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGAGGAGATAATAATCAGGT +CTGAAAATATCACAAACAATGCTAAAATCATAATAGTGCACCTTAATAAAACTGTAGAAA +TCAATTGTACCAGACCCTCCAACAATACAAGAACAAGTATGACTAGAGGACCAGGACACG +TATTCTATAGAACAGGAGATATAATAGGAGATATAAGAAAAGCATATTGTGAGGTCAATA +GAACAAAATGGAATGAAACTATAACACAGGTAGCTAGAAAATTAAGAGAACACTTTAATA +AGACAATAGAGTTTCAACCACCCTCAGGAGGAGATCTAGAAATTACAACACATCATTTTA +ATTGTAGAGGGGAATTTTTCTATTGCAATACAACAAACCTGTTTAATATCATACTTCCAT +GCAGAATAAAGCAAATTGTAAACATGTGGCAGGGAGTAGGACAAGCAATGTATAATCCTC +CCATCAGAGGAATAATTAATTGTGTATCAAATATCACAGGAATACTGTTGACAAGAGATG +GTGGNGAGACCTTCAGACCTGGAGGAGGAAACATAAAGGACAATTGGAGAAGTGAATTAT +ACAAATATAAAGTAGTACAAATTGAACCACTAGGAATAGCACCCTCCAAGGCAAGGAGAA +GAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTATGATCTTTGGGTTCTTAG +GAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAAGCCAGACAAT +TGTTGTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCGCAACAGC +ATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGG +AAAGATACCTAAAAGATCAAACGTTCCTAGGACTTTGGGGCTGCTCTGGAAAAACTATCT +GCACCACCAATGTGCCCTGGAACTCCACTTGGAGTAATAAATCTTATGATGATATTTGGA +ACAACATGACATGGACACAATGGGAGAGAGAAATTAGCAATTACACAAACCACATATATA +CAGTACTCACAGAATCGCAGAACCAGCAAGACAGGAATGAAAAGGATTTGCTAGAATTGG +ATAAATGGGCAAGTCTGTGGAGCTGGTTTGATATATCAAACTGGCTGTGGTATATAAAAA +TCTTTATAATGATAGTAGGAGGTTTAATAGGTCTAAGAATAATTTTTGCTGTGCTTTCTA +TAGTAAATAGAGTTAGGCAGGGATACTCACCTTTGTCTTTCCAGACCCCTACCCATCAAC +AGAGGGAGCAGACAGGCCCGAAAGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAAACAG +ATCGATTCGATTTGCGGGCGGATTCTTAGCTCTTGTCTGGGACGACCTACGGAGCCTGTG +CCTCTTCAGCTACCACCTCTTGAGAGACTTCACCTTGATTGCAGCGAGGACTGTGGAACT +CCTGGGACGCAGGGGGTGGGAAGGCCTCAAATATCTGGGGAATCTTCTGATATATTGGAG +CCAGGAATTACAAACTAGTGCTGTTTCTTTGTTTGATACTATAGCAGTAGCAGTAGCAGG +GTGGACAGATAGGGTTATAGAAGTAGCACGAGGAGCTGGAAGAGCCATTCTCCATATACC +TAGAAGAATCAGACAGGGTTTAGAAAGGGCTTTGCAATAACATGGGAAACAAGTGGTCAA +AAGGATGGTCTCAGGTCAGGGAAAGAATAAGACAAGCAGAAGGAGTAGGAGCAGTCTCTC +AAGATCTAGCTAGACATGGAGCAGTAACAAGTAGTAATATAAATAATCCTGATCTTGTCT +GGCTGGAAGCACAAGAGGAGGAGGTAGGCTTTCCGGTCAGGCCGCAAGTACCCCTAAGAC +CAATGACTTATAAAGCAGCTGTTGATCTTAGCTTCTTTTTAAAAGAAAAGGGGGGACTGG +AAGGGCTAATTTACTCTGAGAAAAGAAAAGAGATCCTTGACTTATGGGTTTATCATACAC +AAGGCTTCTTCCCTGATTGGCATAACTACACACCAGGGCCAGGGATTAGATTCCCACTGT +GTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGACCCAAGAGAAGTAGAGGAGGACACCA +AAGGAGAAAACAACTGCCTGTTACACCCCATGAGCCAACATGGACAAGAAGACGGAGAAC +GACAAGTGCTGATGTGGAAGTTTGACAGTGCCCTAGCACGAAGACACATAGCCCGAGAAC +TGCATCCAGATTACTAG +>CRF02_AG.NG.2009.0.09NG_SC61.JN248592 JN248592 +GTGCGAGAGCGTCAGTGTTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTGA +GGCCAGGAGGAAAGAAACAATATAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGG +AAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAGCTAATGG +AACAGTTACAATCAACTCTTAAGACAGGATCAGAAGAACTTAAATCATTATTTAATACAT +TAGCAACCCTTTGGTGTGTACATCAAAGGATAGACATAAGAGACACCAAGGAAGCTTTAG +ATAAAGTAGAAGAAATGCAAAAGAAGAGCAAACAAAAGACACAGCAGGCAGCCGCTGCCG +CAGGAAGCAGCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGACAAATGGTCCATC +AGCCCATGTCACCTAGGACTTTAAACGCATGGGTAAAGGTAATAGAAGAAAAGGGTTTCA +GCCCAGAAGTAATACCCATGTTTACAGCATTATCAGAGGGAGCCACCCCACAAGATTTAA +ATATGATGCTAAACATAGTGGGGGGACACCAGGCAGCAATGCAGATGTTAAAAGATACCA +TCAATGAGGAAGCTGCAGAATGGGACAGGACACATCCAGTACAAGCAGGGCCTATTCCAC +CAGGCCAGCTGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAAG +AACAAATAGGATGGATGACAGGCAATCCACCTATCCCAGTGGGAGAAATCTATAAAAGAT +GGATAGTTCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACA +TAAGACAAGGACCAAAAGAACCCTTTAGAGATTATGTAGATAGGTTCTTTAAAACTTTGA +GAGCTGAACAAGCTACGCAGGAGGTAAAAAACTGGATGACAGAAACCCTGCTGGTCCAAA +ATGCGAATCCAGACTGTAAGAACATTTTAAGAGCATTGGGACAAGGGGCTACATTAGAAG +AAATGATGACAGCATGTCAGGGAGTAGGAGGACCTGGCCATAAAGCAAAAGTTTTGGCTG +AGGCAATGAGTCAAGTACAACAGACCAACATAATGATGCAGAGAGGCAATTTTAGGGGCC +AGAGAACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAAGG +CCCCTAGGAAAAGGGGTTGTTGGAAATGTGGGAAGGAAGGACACCAAATGAAAGACTGCA +CTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGGCCAGGAA +ATTTTCCTCAGAACAGACTGGAACCAACAGCCCCACCAGCAGAGAGTGTTGGGATGAGGG +AAGAGGCAACCTCCTCTCAGAAGCCGGAACCAGGGGACAAGGATCTTTACCCTCCTTTAA +CCTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAACATAGGGGGACAGCT +AATAGAAGCTCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAGTTTACC +AGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGGGGTTTTATCAAAGTAAGACAGTA +TGATCAGATAAGTATAGAAATTTGTGGAAAAAAGGCCATAGGTACAGTATTAGTAGGACC +TACACCTGTCAACATAATTGGACGAAATATGTTGACTCAGATTGGTTGTACTTTAAATTT +TCCAATTAGTCCTATTGAAACTGTGCCAGTAAGATTAAAGCCAGGAATGGATGGCCCAAA +GGTCAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGACATTTGTACAGA +GATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGT +ATTTGCCATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACT +CAATAAGAGAACTCAAGACTTCTGGGAGGTCCAATTAGGAATACCTCATCCCGCGGGATT +AAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCCCT +AGATCCAGATTTCAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACC +AGGAATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAGGGATCACCAGCAATATT +TCAAGCAAGCATGACAAAAATCTTAGAACCCTTTAGAGCAAAAAATCCAGAGGTGGTGGT +CTACCAATATATGGATGATTTATATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGC +AAAAATAGAGGAGTTAAGAGAACATCTACTGAGATGGGGACTTACTACACCAGACAAAAA +ACATCAGAAAGAACCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGAC +AGTTCAGCCCATACAGCTGCCAGACAAGGAAAGCTGGACTGTCAATGATATACAGAAATT +AGTGGGAAAACTAAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAGGCAACTGTG +TAAACTCCTCAGGGGAGCCAAAGCCCTAACAGATATAGTACCACTGACTGAGGAAGCAGA +ATTAGAATTGGCAGAAAACAGGGAAATTCTAAAAGAACCTGTACATGGAGTGTACTATGA +CCCAACAAAAGACTTAGTAGCAGAAATACAGAAACAGGGGCAAGACCAATGGACATACCA +AATATATCAAGAGCCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGC +CCACACTAATGATGTAAAACAATTAACAGAGGTAGTGCAAAAGGTGTCTATGGAAAGCAT +AGTAATATGGGGAAAGACACCTAAATTTAGACTGCCCATACAAAAGGAAACATGGGACGC +ATGGTGGATGGAGTATTGGCAGGCTACCTGGATTCCTGATTGGGAGTTTGTCAATACCCC +CCCTCTAGTAAAATTATGGTACCAATTAGAGAAAGAACCCATAGCAGGGGCAGAAACTTT +CTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTCACTGA +TAGGGGAAGACAAAAGGTGGTTCCCCTAACTGAGACCACAAATCAAAAGACTGAATTACA +GGCAATTCATCTAGCCTTGCAGGATGCTGGATCAGAAGTAAATATAGTAACAGACTCACA +GTATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGAATCAGAGTTAGTCAATCA +AATAATAGAGGAGCTAATAAAAAAGGACAGAGTATACCTGTCATGGGTACCAGCACACAA +AGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAGTGGAATCAGGAAAGTACT +ATTTTTAGATGGTATAGATAAAGCCCAAGAAGAGCATGAAAGATATCACAGCAATTGGAG +AGCAATGGCTAGTGATTTTAATCTGCCACCTRTAGTGGCAAAAGAAATAGTGGCCAGCTG +TGATAAATGCCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAAT +ATGGCAGTTAGATTGTACACATCTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGC +CAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAAACAGCATACTT +TATATTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAATACACACAGATAATGGCAGCAA +TTTCACCAGTGCTGCAGTAAAAGCAGCATGTTGGTGGGCAGATGTCACACAAGAATTTGG +AATTCCCTATAACCCCCAAAGTCAAGGAGTAGTGGAGTCTATGAATAAAGAATTAAAGAA +AATCATTGGGCAGGTTAGAGATCAAGCTGAACACCTGAAGACAGCAGTACAGATGGCAGT +ATTCATTCACAATTTTAAAAGAAAAGGGGGGATAGGGGGGTACAGTGCAGGGGAAAGGAT +AATAGACATAATAGCATCAGATATACAAACTAAAGAACTACAAAAACAAATTACACAAAT +TCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAA +ACTACTCTGGAAAGGTGAAGGGGCGGTAGTAATACAAGACAATAACGACATAAAGGTAGT +GCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTG +TGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCATATGT +ATATCTCTAAGAAAACTCAGGGTTGGTTTTATAGACATCACTATGAAAGTAGGCATCCAA +AAGCAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAATAGTAAGAACATATT +GGGGTCTGCATACAGGGGAAAGAGATTGGCACTTGGGTCATGGGGTCTCCATAGAATGGG +AACAGAAAAGGTATAGTACACAAATAGATCCTGACCTAGCAGATCAACTGATTCACCTGC +ATTATTTTGACTGTTTTACAGACTCTGCCATAAGGAAAGCCCTATTAGGACAAGAAGTTA +GACCTAGGTGTGAATATCAAGCAGGGCATAGAAAGGTAGGATCGCTACAATATTTGGCAC +TGAAAGCATTAGTAACACCAACAAGGAGAAAGCCCCCTTTACCGAGTGTTAAGAAGTTAA +CAGAAGACAGATGGAACAAGTCCCAGAAGACCAGGGGCCACAGAGGGAGCCATTCAATGA +ATGGGCATTAGAATTGTTAGAAGAGCTTAAACATGAAGCTGTCAGACACTTTCCTAGGCC +ATGGCTCCATGGACTAGGACAACATATCTATAACACATATGGGGATACTTGGGAAGGGGT +TGGAGCTATAATAAGAATCCTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCA +ACATAGCAGAATAGGCATTATTCGAGGGAGAAGAGGCAGGAATGGAGCTGGTAGATCCTA +GCCTAGAGCCCTGGAACCATCCGGGAAGTCAGCCCACAACTGCTTGTAACAATTGCTACT +GTAAAAAATGCTGCTGGCATTGCCAATTGTGCTTTCTGAACAAGGGCTTAGGCATCTCCT +ATGGCAGGAAGAAGCGGAGACGCCGACGAGGAACTCCTAAGAGCCGTCAGGATCATCAAA +ATCCTGTACCAAAGCAGTGAGTAGTAACAATTAGTATCTGTGATGCAAGTTTTAGGAATA +GCTTCAATAGTAGGGCTAATAGTAGCATCCATAGCAGCCATAGTTGTGTGGACCATAGTA +TTCATAGAGTATAGGAAAATAAGGAAAGAGAGAAAGATAAGTAGGTTACTTGATAGAATA +AGAGAAAGAGCAGAAGATAGTGGCAACGAGAGTGATGGAGACACAGAGGAATTGGCTACT +CTTATGGAGAGGGGGGCTGATAATGTTTTGGATAATGATAATTTGTAATGCTCAACCATT +GTGGGTCACGATCTACTATGGGGTACCTGTGTGGAGAGAAGCAGAGACCACCCTATTTTG +TGCCTCAGATGCTAAGGCATATGTGAAAGAATCACATAATGTCTGGGCTACACATGCCTG +TGTACCCACAGATCCTAACCCACAAGAAATATATTTGAAAAATGTAACAGAAAATTTTAA +TATGTGGAAAAATAACATGGTAGATCAGATGCATGAAGATATAATTAGTCTATGGGACGA +AAGCCTAAAGCCATGTGTAAAATTAACCCCTCTCTGTGTTACTTTAGAGTGTAATAATTT +CAATAGTAGTAATAACAGCACCTCTGCCAACAACAGCATATCTGATGGCATGCAAGAAAT +AAAAAACTGCTCGTTCAATATGACCACAGTACTAAGAGATAAGAGACAGAAAATAGCTGC +GCTTTTTTATAGACAAGATATAGTACCAATGGATGGGAATAGCAGTAGTAGTCAGTATAG +GTTAATAAATTGTAATACCTCAGCAATTACACAGGCTTGTCCAAAGGTATCCTTTGAGCC +AATTCCCATACATTATTGTGCACCAGCTGGTTTTGCGATTCTAAAGTGTAATGATGAGAA +GTTCAATGGAACAGGGCCATGCACGAATGTCAGCACAGTACAATGCACACATGGAATCAA +GCCAGTAGCATCAACTCAGCTGCTGTTAAATGGCAGTCTAGCAGAAAAAGATGTAGTGAT +CAGATCTGAAAATATCTCAAACAATGCCAAAACCATAATAGTACAGTTAAAGAGTCCTGT +AAAAATTAATTGTACCAGACCTAACAACAATACAAGAAAAGGTGTACATATAGGACCAGG +GCAAACATTCTATGCAACAGGTGACATAATAGGAAATATAAGACAAGCACATTGTAATGT +CAGTGGAGGGGACTGGAATACTGCTTTACAACAAGTGGTTGAACAATTAGGGAAGTACTT +CAACAAATCCACAATAGTCTTTAAGAACCACTCAGGAGGGGATTTAGAAATTACAACACA +TAGTTTTAATTGTGGAGGAGAATTTTTCTATTGCAATACAACACCACTGTTTAAGAGCGT +TTGGAATAAAAATGGGAGCACTTGGAACAGCAATACCACTAACAGTACAGAGTCAAATAA +CACTATAACCCTCCAGTGCAAAATAAAGCAAATTATAAATCTGTGGCAGAGAGTAGGACA +AGCAATATATGCCCCCCCCATCCCAGGAGTAATAAGGTGTGAATCAAATATTACAGGACT +ACTATTAACAAGAGATGGGGGAAATATTGATGATGATGCAAATGAGACTTTCAGGCCGGG +AGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAGTAAAAAT +TGAACCACTAGGTGTAGCACCCACCCGTGCAAGAAGAAGAGTGGTGGGGAGAGAAAAAAG +AGCAGTTGGACTAGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGG +CGCAGCGTCAGTAACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACA +GCAAAGCAATTTGCTGAGGGCGATAGAGGCTCAACAACAGTTGTTGAAACTCACGGTCTG +GGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAGGGACCAACA +GCTCCTAGGAATTTGGGGATGCTCTGGAAGACTCATCTGCACCACCAATGTACCTTGGAA +CTATAGTTGGAGTAATAAATCTTATAATGACATATGGGATAACATGACCTGGCTACAATG +GGATAAAGAAATTAGCAATTACACAGCAATAATATATAATCTAATTGAAGAATCGCAGAA +TCAGCAGGAAAAGAATGAACAAGACTTATTGGCATTGGACAAGTGGGCAAGTCTGTGGAA +TTGGTTTGACATAACAAAATGGCTATGGTATATAAGAATATTTATAATGATAGTAGGAGG +TTTAATAGGACTAAGAATAGTTTTTGCTGTACTTGCTTTAATAAATAGAGTTAGGCAGGG +ATACTCACCCTTGTCGTTCCAGACCCTTGCCCGCCACCAGAGGGAACCCGACAGGCCCGA +AGGAATCGAAGAAGGAGGTGGAGAGCAAGACAGAAACAGATCCGTGCGATTAGTGAGCGG +ATTCTTAGCACTTGCCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGATT +GAGAGACTTTCTCTTGATTGCAGCAAGGACTGTGGAACTTCTGGGACACAGCTGTCTCAA +GGGGCTGGGACTGGGGTGGGAAGCCCTCAAATATCTGTGGAATCTTCTATCATACTGGAG +TCAGGAACTAAAGAATAGTGCAGTTAGTTTGCTTAATGCAATAGCAATAGCAGTAGCTAA +CTGGACAGACAGAATTATAGAAATAGGACAAAGAGCTGGTAGATAACATGGGTGGCAAGT +GGTCAAAAAGCAGCATAGTGGAATGGCCTAAGGTTAGGGAAAGAATAAGACAGACCCCTC +CAACAGCAACAGGAGTAGGAGCAGCATCTCAAGATTTAGATAAACATGGAGCAATCACAA +GCAGCAACACAGCAGAAACTAACCCTGATTGTGCCTGGCTAGAAGCACAAGAGGACGAGG +AGGTAGGCTTTCCAGTTAAGCCACAGGTACCTTTGAGACCAATGACTTATAAGGCAGCCT +TCGATCTCAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATATACTCCAAGA +AAAGACAAGAGATCCTTGATCTATGGGTCTATAACACACAAGGATTCTTCCCAGATTGGC +AGAACTACACCCCAGGGCCAGGGACTAGATTCCCACTGACCTTTGGGTGGTGCTTCAAAC +TAGTACCAATGGATCCAGCAGATATAGAGGAAGCCAATAAAGGAGAGAACAACAGTTTAT +TACACCCCATCTGCCAGCATGGAATGGAGGACGAAGAAAGAGAAGTGCTGGTCTGGAGAT +TTGACAGCAGCCTAGCACGGAGACACATAGCCCGAGAACTGCACCCAGAGTACTACAAGG +ACTGCTGACACAGGAGTTGCTGACACAGAAGTTGCTGACACAGTTGTTGCTGACAAGGGA +CTTTTCCGCCTGGGACTTTCCGGGGAGGCGCGGCATGGGAGGGACTGGGGAGTGGCTTGC +CCTCAGAAGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGGGTCTCTCTTGTTAGACC +AGATTTGAGCCTGGGAGCTCTCTGGCTAGCAAGGGAACCCACTGCTT +>CRF02_AG.ES.1999.0.R74_s_nt0545_9481.MF157740 MF157740 +TGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGAC +CACTCTAGACTGTGTAAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCGGAAGTTAATA +GGGACTCGAAAGCGAAAGTTCCAGAGAAGCTCTCTCGACGCACGGACTCGGCTTGCTGAG +GTGCACACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAAATTTTGACTAGCGGA +GGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCGGTATTAAGTGGGGGAAAATTAGATGC +ATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAGT +ATGGGCAAGCAGGGAGCTGGAAAGATTTGCACTAAACCCTGGCCTTTTAGAATCAGCAGA +AGGATGTCAACAACTAATGGAACAGTTACAGTCAGCTCTCGGGACAGGATCAGAAGAACT +TAAATCATTATTTAATACACTAGCAGTCCTTTGGTGTGTACATCAAAGGGTAGACATAAA +AGACACCAAGGAAGCCTTAGATAAGATAAAGGAAGTACAGAATAAGAGCAAGCAAAAGCC +ACAGCAGGCAGCAGCTGCCGCAGGAAGCAGCAGCCAAAATTACCCTATAGTGCAAAATGC +ACAAGGGCAAATGGTACATCAGTCCATGTCGCCTAGGACTTTAAATGCATGGGTAAAGGT +AATAGAAGAAAAGGGTTTCAGTCCAGAAGTAATACCCATGTTTTCAGCATTATCGGAGGG +AGCCGCCCCGCAAGATTTAAATATGATGCTAAACATAGTGGGGGGACACCAGGCAGCAAT +GCAGATGTTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGGTACATCCAGT +ACATGCAGGGCCTGCCCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGG +AACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAGCAATCCACCTATCCCAGT +GGGAGAAATCTATAAAAGATGGATAGTCCTGGGATTAAATAAAATAGTAAGAATGTATAG +CCCTGTCAGCATCTTGGACATAAGACAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGA +TAGGTTCTTTAAAACTTTAAGAGCTGAACAAGCTACACAGGAGGTAAAAGGCTGGATGAC +AGAAACCTTGCTGGTCCAAAATGCGAATCCAGACTGTAAGACCATTTTAAGAGCATTAGG +ACCAGGGGCTTCATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCA +TAAAGCAAGGGTTTTGGCTGAGGCAATGAGTCAAGCACAACAGGCCAACATAATGATGCA +GAGAGGTAATTTTAGGGGCCAGAGAACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACA +CCTAGCCAGAAATTGCAAGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGGAAGGAAGG +ACACCAAATGAAAGACTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTC +CAGCAAGGGGAGGCCAGGAAATTTTCCCCAGAGCAGACCGGAACCAACAGCCCCACCAGC +AGAGAGCGTTGGGATGGGGGAAGAGATAACCTCCTCTCCGCAGCAGGAACCGAGGGACAA +GGGGCTATATCCTCCTTTAACTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACA +GTAAGAATAGAGGGACAACTAATAGAAGCCCTATTAGACACAGGAGCAAATGATACAGTA +TTAGAAGACATAAATTTACCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGT +TTTATTAAAGTAAGACAATATGATCAGGTACTTATAGAAATTTGTGGAAAAAAGGCCATA +GGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGACGAAATATGTTGACTCAG +ATTGGTTGTACTTTAAATTTTCCAATTAGTCCTATTGAAACTGTGCCAGTAAAATTAAAG +CCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTGACAGAAAAAAAAATAAAAGCA +TTAACAGAAATTTGTGCAAAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGACCTGAA +AATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATAGTACTAAATGGAGAAAA +TTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTCTGGGAGGTCCAATTAGGA +ATTCCTCATCCCGCGGGATTAAAGAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGAT +GCATATTTTTCAGTTCCTTTAGATAAAGACTTTAGGAAGTATACTGCATTCACTATACCT +AGTGTAAATAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGG +AAAGGATCACCAGCAATATTTCAGGCAAGCATGACAAAAATCTTAGAGCCCTATAGGACA +AAAAATCCAGAGATGGTGATCTACCAATATATGGATGATTTATATGTAGGATCTGACTTA +AAAATAGGGCAGCATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTGAGATGGGGG +CTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGATATGAA +CTCCATCCTGACAAATGGACAGTCCAGACTATACAGCTGCCAGACAAAGACAGCTGGACT +GTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAGATTTATCCAGGA +ATTAAAGTAAAGCAACTGTGTAAACTCCTCAGGGGAGCCAAAGCGCTAACAGATATAGTA +ACACTAACTGAGGAAGCAGAATTAGAATTGGCAGAGAACAGAGAAATTTTAAAAGAACCT +GTACATGGAGTATATTATGACCCAACAAAGGACTTAGTAGCAGAAATACAGAAGCAGGGG +CAAGACCAATGGACATATCAAATATATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAA +TATGCAAAAAAGAGGTCTGCCCACACTAATGATGTAAAACAATTAACAGAGGTAGTGCAA +AAAGTGACTACAGAAAGCATAATAATATGGGGAAAGACCCCTAAATTTAGACTACCCATA +CAAAAAGAAACATGGGAAGCATGGTGGATGGAGTATTGGCAAGCCACCTGGATTCCTGAA +TGGGAGTTTGTCAATACCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCC +ATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGGAAACTAAGCTAGGA +AAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACA +AATCAAAAGACTGAATTACATGCAATTCATTTAGCCTTGCAGGATTCGGGATCAGAAGTA +AATATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGT +GAATCAGAGTTAGTCAATCAAATAATAGAGAAGCTAATACAGAAGGACAAAATATACCTG +TCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGT +AATGGAATCAGGAAGGTACTATTTTTAGATGGCATAGATAAAGCTCAAGAGGAGCATGAA +AGATATCACAGCAATTGGAGAGCAATGGCTAGTGATTTTAATCTGCCACCTATAGTAGCA +AAAGAAATAGTGGCCAGCTGTGACAAATGCCAGCTAAAAGGGGAAGCCATGCATGGACAA +GTAGACTGTGGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAGGGGAAAATTATC +TTAGTAGCAGTCCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATCCCAGCAGAAACA +GGACAGGAGACAGCATACTTTATATTAAAATTAGCAGGAAGATGGCCAGTAAAAATAATA +CACACAGACAATGGCAGCAATTTCACCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCA +AATGTCACACAAGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCT +ATGAATAAAGAATTAAAGAAAATTATAGGGCAGGTCAGGGATCAAGCTGAACACCTTAAG +ACAGCAGTACAGATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGG +TACAGTGCAGGGGAGAGAATAATAGATATAATAGCATCAGATATACAAACTAAAGAACTA +CAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCC +ATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGAT +AATAGTGAAATAAAGGTAGTACCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAA +CAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAG +TTTAGTAAAACATCATATGTATATCTCTAAGAAAGCTAGGAATTGGGTTTATAGACATCA +CTATGAAAGTAGGAATCCAAGAGTAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAA +ATTAGTAGTAAGAACATATTGGGGTCTGCATACAGGAAAAAGAGACTGGCACTTGGGTCA +TGGGGTCTCCATAGAATGGAAGCAGAAAAGATATAGTACACAAATAGATCCTGACCTAGC +AAACCAACTGATTCACCTACATTATTTTGACTGTTTTTCAAAATCCGCCATAAGGAAAGC +CATAATAGGAGAAATAGTTAGACCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGG +ATCACTACAATATTTGGCACTGAAAGCAATAGTAACACCAACAAAGACAAAGCCACCTTT +ACCTAGTGTTAGGAAGTTAGCAGAAGACAGATGGAAAGAGCCCCAGAAGACCAGGGGCCA +CAGAGGGAGCCGTTCAATGAATGGATGCTAGAACTGTTAGAAGAGCTTAAACATGAAGCT +GTTAGGCACTTTCCTAGGCCGTGGCTCCATGGGCTAGGACAACATATCTATGAAACATAT +GGGGATACTTGGGAAGGGGTTCAAGCTATAATAAGAATTTTGCAACAACTACTGTTTGTT +CATTTCAGAATTGGGTGTCAACATAGCAGGATAGGCATTATTCGAGGGAGAAGAGGCAGG +AATGGAGCTGGTAGATCCTAGCCTAGAGCCCTGGAACCACCCGGGAAGCCAGCCTACAAC +TGCTTGTAGCAAATGTTATTGTAAAATGTGCTGCTGGCATTGCCAATTGTGCTTTTTGAA +CAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGTGGAGACGCCGACGAGGAGCTTCTCA +GAGCCATCAGGTTCATCAAGATCCTGTACCAAAGCAGTAAGTAATAACAATTAGTATATG +TGATGCTACCTTTACATATAGCTGCAATAGTAGGACTAGTAGTAGCATTCATAGCAGCCA +TAGTTGTGTGGACCATAGTATATATAGAATATAGGGAAATAAGGAAACAGAAGAAAATAG +ACAGGTTACTTGAGAGAATAAGAGAAAGAGCAGAAGATAGTGGCAATGAGAGTGACGGGG +ATACAGAAGAATTATCCACTCTTTTGGAGATGGGGTATGATRATATTTTGGACAATGATA +ATTTGTAATGGTGAGCAGATGTGGGTCACGGTCTATTATGGGGTACCTGTGTGGAAAGAC +GCAAAGACCACCCTATTTTGTGCATCAAATGCGCAAGCATATAACCCAGAAGTACATAAT +GTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAACCCACAGAAAATACCTTTGGAA +AATGTAACAGAAAAATTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAAGAT +ATAATTAGTCTATGGGACCAAAGCCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGCGTT +ACTTTAAATTGTCGTAACCTCGACAACAAAACTAGCAACGCCAATAGTAGCAACAGCAAC +GATTTCAACAGAACCATATCTATTGACATGAAAGAGGAAATACAAAACTGCTCTTTCAAT +ATGACCACAGAATTAAGAGATAAGGAAAAGAAAATGTATGCACTTTTTTATAGACTTGAT +ATAGTACAAATTGAAAATAGCAGTAGTCTTGAAAATGGCAGTAGTCCGTATAGGTTAATA +AATTGTAATACCTCAGCCATTACACAGGCTTGTCCAAAGATAACCTTTGAGCCAATTCCC +ATACATTATTGTGCCCCAGCTGGTTTTGCAATTTTAAAGTGTAATGATAAGAAGTTCAAT +GGAACAGGGCCCTGCATGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGTA +GTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAAAGGTAGCAATTAGATCT +GAAAATATCACAAACAATGCCAAAACCATAATAGTACAGTTGATTACGCCTGTAAAAATT +AACTGTACCAGACCTGGCAACAATACAAGAAGAAGGGTGCGTATAGGACCAGGGCAAGCA +TTCCATGCATCAGATGATATAATAGGAGATATAAGAAAAGCACATTGTAATGTCAGTGAA +AAAGATTGGAATAACACTTTACACCAGGTAGCTAATCAATTAGGGGAGCACTTTAAGAAT +GCAAAAACAATAAAATTTGCTAGCTCCTCAGGAGGGGACGTAGAAATTACAACACATAGT +TTTAATTGTGGAGGAGAATTTTTCTATTGCAGTACATCAGAACTGTTTAATAGCACTTGG +AAACGGGTTAATAACACTACTACTTGGAATAGCACTGCCAACTCAACAAATGACCCTATA +ACTCTCCGGTGTAGAATAAAGCAAATTGTAAGGATGTGGCAGAGAGTAGAACAAGCAATG +TATGCCCCTCCCATCCGAGGAGAAATAAGGTGTGAGTCAAACATTACAGGATTACTATTA +ACAAGAGATGGAGGGCATGATGATGGGACAGATGAGACAGAGGAGACCTTCAGGCCTGGA +GGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAGTAAAAATT +GAACCACTAGGTGTAGCACCCACCCATGCAAAAAGAAGAGTGGTGGAGAGAGAAAAAAGA +GCAGTTGGACTGGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGC +GCGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAG +CAGAGCAATTTGCTGAGAGCTATAGAGGCTCAACAACATCTGTTGAGACTCACGGTCTGG +GGCATTAAACAGCTCCGGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAGTGATCAACAG +CTCCTAGGACTTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCCTGGAAC +TCTAGTTGGAGTAACAAAACTTATAATGACATATGGAATAACATGACCTGGCTGCAATGG +GATAGAGAAATTGACAATTACACAAACATAATATATAATCTAATTGAGGAATCGCAAAAC +CAGCAGGAAAAGAATGAACAAGACTTGTTGGCATTGGACACGTGGGCAAGCCTGTGGAAT +TGGTTTAAAATAACAAACTGGCTATGGTATATAAAAATGTTTATAATGATAGTAGGAGGT +TTAATAGGTTTAAGAATAGTTTTTGCTGTACTTACCATAATAAATAGAGTTAGGCAGGGA +TACTCACCTTTGTCGTTCCAGACCCTTACCCACCACCAGCGGGGACCCGACAGGCCCGAA +AGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAGACAGATCAGTGCGCTTAGTGAGCGGA +TTCTTAGCACTTGCCTGGGACGATCTGCGGAACCTGTGCCTCTTCAGCTACCACCGATTG +AGAGACTTAGTCTTGATTCTGGGACACAGCAGTCTCAAGGGACTGAGACTGGGGTGGGGA +GCCCTCAAATATCTGTGGAATCTTCTATCATACTGGGGTCAGGAACTAAAGAATAGTGCT +ATTAGTTTGCTTGATACAATAGCAATAGCAGTAGCTAACTGGACAGACAGGATTATAGAA +ATAGGACAGAGAGTTGGTAGAGCTATTTGCAACATACCTAGAAGAATCAGACAGGGCTTA +GAAAGGGCTTTGCTATAACATGGGTGGCAAGTGGTCAAAAAGCAGCATAGTGGGATGGCC +TCAGGTTAGGGAAAGGATAAGACAAACCCCTCCAGCGCCAGCAGCAGAAGGAGTAGGAGC +GGCATCTCAAGACTTAGATAAATATGGAGCAATTACAAACAGTAATACAACACAGAATAA +TCCTGATTGTGCCTGGCTGGAAGCACAAGAAGACGAGGAGGTAGGCTTCCCAGTCAGACC +ACAGGTACCTTTGAGACCAATGACTACCAGGGCAGCTCGAGATCTCAGCCACTTTTTAAA +AGAAAAGGGGGGACTGGATGGGTTAATTCACTCCAAGAAAAGACAAGAGATCCTTGATCT +GTGGGTCTATCACACACAAGGATTCTTCCCAGATTGGCAGAACTACACTCCAGGGCCAGG +GACTAGATACCCACTTTGCTTCGGGTGGTGCTTCAAACTAGTACCAATGGATCCAGCAGA +GGTAGAGAAAGCCAATGAAGAAGAGAACAACAGTTTATTACACCCCATCTGTCAGCATGG +AATGGAAGACGAAGACAGAGAAGTACTGGTCTGGAGGTTTGACTGTAACCTGGCATTTAG +ACACGTAGCTAAAGAGCTGCATCCGGAGTACTACAAAGACTGCTGACACAGAAGTTGCTG +ACAGGGACTTTCCACTGGGGACTTTCCGGGGAGGCGTGGTGTGGGAGGAG +>CRF02_AG.CM.2001.0.01CM_0131NY.AY371137 AY371137 +GCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGGCTAAGG +CCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAA +AGATTCGCACTTAATCCTGGTCTTTTAGAAACAGCAGAAGGATGTCAACAAATAATGGAG +CAGTTACAATCAACTCTCAGGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTA +GCAGTCCTGTATTGTGTACATCAAAGGTTAGATATAAAAGACACCAAGGAAGCCTTAGAT +AAAATAGAGGAAATGCAAAATAAGAGCAAACAAAAGGCACAGCAGGCAGCAGCTGGCACA +GGCTGCAGCCAAAATTACCCTATAGTGCAGAATGCACAAGGGCAAATGACACATCAGAAT +ATGTCACCTAGGACTTTAAATGCATGGGTGAAGGTAATAGAAGAAAAGGCTTTCAGCCCA +GAAGTAATACCCATGTTTTCAGCCTTATCAGAGGGAGCCACCCCACAAGATTTAAATATG +ATGCTAAACATAGTGGGGGGGCACCAGGCAGCAATGCAAATATTAAAAGATACCATCAAT +GAGGAAGCTGCAGACTGGGACAGGACACATCCAGTACCTGCAGGGCCTATTGCACCAGGC +CAGATAAGAGACCCAAGGGGAAGTGATATAGCAGGAACTACTAGTAACCTTGAAGAACAA +GTAAGATGGATGACAAGCAATCCACCTATCCCAGTGGGAGACATCTATAAAAGATGGATA +ATCCTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGA +CAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGATAGATTCTTTAAAACTTTGAGAGCT +GAACAAGCTACGCAGGAGGTAAAACACTGGATGACAGAAACCTTGCTGGTCCAAAATGCG +AATCCAGACTGTAAGTCTATTTTGAAGGCATTAGGAACAGGGGCTACATTAGAAGAAATG +ATGACAGCATGCCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGGGTTCTGGCTGAGGCA +ATGAGTCAAGTACAACAGACAAACATAATGATGCAGAGAGGCAATTTTAGGGGACAGAAA +ACAATAAAGTGTTTCAATTGTGGTAAAGAAGGGCACCTAGCCAGAAATTGCAAGGCCCCT +AGAAAAAAGGGCTGTTGGAAATGTGGGAAGGAAGGACACCAAATAAAAGACTGCACTGAG +AGACAGGCGAATTTTTTAGGGAGAATTTGGCCTTCCAAGGGGAGGCCAGGAAATTTTCCT +CAGAGCAGACCGGAACCAACAGCCCCACCAGCAGAGATCTTTGGGATGGGGGAAGAGACA +CCCTCCTCTCCGAAGCAGGAACCGAAGGACGAGGGAATATACCCTCCCTTAACTTCCCTC +AAATCACTCTTTGGCAACGACCCTTAGTTACAGTAAAAATAGGGGGACAGCTAATAGAAG +CCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAGTTTACCAGGAAAAT +GGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGATCAGA +TACTCATGGAAATTTATGGGAAAAAGGCTATAGGTACAGTGCTAGTAGGACCTACACCTG +TCAACATAATTGGACGAAATATGTTGACTCAGATTGGCTGTACTTTAAATTTTCCAATTA +GCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAAC +AATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTGCAGAAATGGAAA +AGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCA +TAAAGAAAAAAGATAGTACTAAATGGAGGAAATTAGTAGATTTCAGAGAACTCAATAAAA +GAACTCAAGACTTCTGGGAGGTCCAACTAGGGATACCTCATCCCGCGGGATTAAAAAAGA +AAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATGAGG +GCTTTAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACCGGGAATTA +GATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAAGCTA +GCATAACAAAAATCTTAGAGCCCTTTAGAATGAAAAATCCAGAGATAATAATTTACCAAT +ATATGGATGATTTATATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGCAAAAGTAG +AGGAGTTAAGAGAACATCTACTGAAATGGGGATTTACCACACCAGACAAAAAACATCAGA +AAGAGCCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAGC +CTATACAGCTGCCAGACAAAGACAGCTGGACTGTCAATGATATACAGAAGTTAGTGGGAA +AACTAAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAAACAACTGTGTAAACTCC +TCAGGGGAGCCAGAGCACTAACAGATATAGTAACACTGACTGAGGAAGCAGAATTAGAAT +TGGCAGAAAACAGGGAAATTCTAAAAGAACCTGTACATGGAGTCTATTATGACCCAGCAA +AAGACCTAATAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTTATC +AAGAGCCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGCTCACACTA +ATGATGTAAAACAATTAACAGAGGTAGTGCAAAAGGTGGCTACAGAAAGCATAGTAATAT +GGGGAAAGACCCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAGCCTGGTGGC +TGGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTCTAG +TAAAATTATGGTACCAATTAGAGAAAGAACCAATATTAGGGGCAGAAACTTTCTATGTAG +ATGGGGCAGCTAATAGGGAGACTAAGCTAGGGAAAGCAGGGTATGTCACTGACAGAGGAA +GACAAAAGGTTGTTTCCCTAAATGAGACAACAAATCAAAAGACTGAATTACATGCAATCC +ATCTAGCCTTGCAGGATTCAGGAACAGAAGTAAATATAGTAACAGACTCACAGTATGCAT +TAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGAGTTAGTTAATCAAATAATAG +AGAAGCTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGAATTG +GAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAGAGTACTGTTTTTAG +ATGGCATAGATAAAGCTCAAGAAGAGCATGAAAAATATCACAGTAATTGGAGAGCAATGG +CTAGTGATTTTAATCTGCCACCTATAGTAGCAAAAGAAATAGTGGCCAGCTGTGATAAAT +GCCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAAT +TAGATTGTACACATTTAGAAGGAAAAATTATCATAGTAGCAGTCCATGTAGCCAGTGGCT +ATATAGAGGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTTATATTAA +AATTAGCAGGAAGATGGCCAGTGAAAATAATACACACAGACAACGGCAGCAATTTCACCA +GTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAAATGTCACACAAGAATTTGGAATTCCCT +ACAATCCCCAAAGCCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAAATTATAG +GGCAGGTCAGGGATCAAGCTGAACACCTTAAGACAGCAGTACAGATGGCAGTGTTCATTC +ACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACA +TAATAGCATCAGATATACAAACTAAAGAACTACAAAAACAAATTATAAAAATTCAAAATT +TTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAAGCTACTCT +GGAAAGGTGAAGGGGCAGTAGTAATACAGGATAATAGTGATATAAAGGTAGTACCAAGAA +GAAAAGTAAAAATCATTAAAGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAA +GTAGACAGGATGAGAATTAGAACATGGAACAGTTTAGTAAAGCATCATATGTATGTTTCT +AAGAAAGCTAGAAATTGGTTTTATAGACACCACTATGAAAGCCGACATCCAAAAGTAAGT +TCAGAAGTACACATTCCACTAGGGGATGCTATATTGGTAATAAAAACATATTGGGGACTG +CATACAGGGGAAAGAGAGTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAGAGA +AGATACAGCACACAAGTAGATCCTGACCTAGCAGACCAACTGATTCACCTGCATTATTTT +GACTGTTTTTCAGAATCTGCCATAAGAAAAGCCATATTAGGACAAGTAGTTAGACCTAGG +TGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTACAATATTTGGCACTGAAAGCA +TTAGTAACACCAACAAGGACAAGACCACCTTTGCCTAGTGTTAAGAAATTAACAGAAGAC +AGATGGAACAAGCCCCAGAGGACCAGGGGCCGCAGAGGGAGCCGTCCAATGAATGGACAT +TAGAACTGTTAGAAGAGCTTAAACATGAAGCAGTTAGACATTTTCCTAGGCCATGGCTCC +ATGGATTAGGACAACATATCTATGAAACATATGGGGATACTTGGGAAGGGGTTGGAGCTA +TAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGCCAACATAGCA +GAATAGGCATTATTCCAGGGAGAGGAGGCAGAAATGGAGCTAATAGATCCTAGCCTAGAG +CCCTGGAACCACCCGGGAAGTCAGCCTACAACTGCTTGTAACAATTGTTACTGTAAAATA +TGCTGCTGGCATTGCCAATTATGCTTTCTGAACAAGGGCTTAGGCATTTCCTATGGCAGG +AAGAAGCGGAGACGCCGACGAGGAACTTCTCACAGCCGTCAGGATCATCAAAATCCTGTA +CCAAAGCAGTAAGTAGTAATAATTAGTATATGTGATGCAATCCTTAGAAATAGCTACAAT +AGTAGGACTAGTAGTAGCATTCATAGCAGCCATAGTTGTGTGGACCATAGTGTTCATAGA +ATATAAGAAAATAAGAAAACAGAAGAAAATAGACAGGTTACTTGATAGAATAAGGGACAG +AGCAGAAGATAGTGGCAATGAGAGTGATGGGGATACAGAGGAATTATCCACTCTTATGCA +GCTGGGGGATTATGATTTGTTTGTTAATGATAATGTGTAATGCTAACAAAAACTTATGGG +TCACAGTCTACTATGGGGTACCTGTATGGAAAGAAGCAAACACCACCCTATTTTGTGCAT +CAGATGCTAAAGCATATAACAGAGAAGCACATAATGTCTGGGCTACACATGCTTGTGTAC +CCACAGATCCCAACCCACAAGAAATACCTTTGGAAAATGTAACAGAAAAGTTTAATATGT +GGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATTAGTCTATGGGACCAAAGTC +TAAAGCCATGTGTACAGCTAACCCCTCTCTGCGTGACTCTACATTGTTCTGACAACGTCA +CTAACATCACTAACGTGTCTGAGAACATGAAAGGGGAAATAAAAAACTGCTCTTTCAATA +TGACCACAGAATTAAGAGATAAGCAAAGGAAAATGTATTCACTTTTTTATAGACTTGATG +TAGTACCAATTAATGGAGATAATGATAGTAGTCAGTATAGACTAATAAACTGTAATACCT +CAGCCATTACACAGGCTTGTCCAAAAGTATCCTTTGAGCCAATTCCCATACATTTTTGTG +CCCCAGCTGGTTTTGCGATTCTGAAGTGTAAGGATAAGAAGTTCAAGGGAACAGGGTCAT +GCCAGAATGTCAGCACAGTACAATGCACACATGGAATCAAACCAGTAGTATCAACTCAAC +TGTTACTAAATGGCAGTCTAGCAGAAGGAGAGGTAGTGATTAGATCTGAAAATATCACAA +ACAATGCCAAAATCATAATAGTACAGTTGGCTAGTCCTGTAAAAATTAATTGTACCAGAC +CTAGCAACAATACAAGAAAAAGTATACATATAGGACCAGGACGAGCATTCTATGCAACAC +ATGACATAACAGGGAATATAAGACAAGCACATTGTAATGTCAGTGAAGCAAAATGGAAGG +AAGCTTTACAACAGGTAGCTACACAATTAAGAAAGTTCTTTAAGAATAACACATCAATAA +AATTTGCTAAATCCTCAGGAGGGGATGTAGAAATTACAACACATAGTTTTAATTGTGGAG +GAGAATTTTTCTATTGCAATACATCACAACTGTTTAATAGTACTTGGAATAGTACTTATA +GCAATAATGCCAACTTAACAAATGGCACTATAACTCTCCAATGCAGAATAAAGCAAATTG +TACAGATGTGGCAGAGAGTAGGACAAGCAATGTATGCCCCTCCCATCCAAGGAGTAATAA +GGTGTGAGTCAAACATAACAGGATTACTATTAACAAGAGATGGAGGGACAAATAATACAA +ATAATACCGAGACATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAAT +TATATAAGTATAAGGTAGTACAAATTGAACCAGTGGGTGTGGCACCCACCCATGCAAAAA +GAAGAGTGGTGGAGAGAGAAAAAAGAGCAGTTGGACTGGGAGTTGCGTTCCTTGGGTTCT +TAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGAC +AATTATTGTCTGGTATAGTGCAACAGCAGAGCAATTTGCTGAAGGCTATAGAGGCTCAAC +AACATATGTTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTC +TGGAAAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCA +TCTGCACCACTACGGTGCCCTGGAACTCTAGTTGGAGTAATAAAACTTATGAGGAAATAT +GGGACAACATGACCTGGATGCAATGGGATAGAGAAATTAATAATTACACAGGGATAATAT +ATAATCTAATTGAACAATCACAGAACCAGCAGGAAAAGAATGAACAAGATTTATTGGCAT +TGGACAAGTGGGAAGGCCTGTGGAATTGGTTTAACATAACAAAATGGCTATGGTATATAA +AAATATTTATAATGATAGTAGGAGGTTTAATAGGCTTAAGAATAGTTTTTGCTGTGCTTA +ATGTAATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGACCCTTACCCACC +ACCAGAGGGAACCCGACAGGCCCGAAAGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAG +ACAGATCCGTGAGATTAGTCAGCGGGTTCTTAGCACTTGCCTGGGACGACCTGCGGAACC +TGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTAGCCTTGATTGCTGCGAGGGGTGTGG +AACTTCTGGGACACAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAAGCCCTCAAATATC +TGGGGAATCTTCTGGCATATTGGGGTCGGGAACTAAAGAATAGTGCTATTAATTTGCTTG +ATACAACAGCAATAGCAGTAGCTAACTGGACAGATAGAGTTATCGAAATAGCACAAAGAG +CTGGTAGAGCTATTATTAACATACCTACAAGAATCAGACAGGGCTTCGAAAGGGCTTTGC +TATAACATGGGTGGCAAGTGGTCAAAAAGTAGCCTAGTGGGATGGCCTCAGATTAGAGAA +CGAATGAGACAAACTCCTCCAACTCCTCCTCCAGCAGCAAAAGGGGTAGGAGCAGTATCT +CAAGATTTAGATAAACATGGAGCAATCACAAGCAGTAATACAGCAGCCACTAATGCTAGT +TGTGCCTGGCTGGAAGCACAAGAGGACGAGGAAGTAGGCTTTCCAGTCAGGCCTCAGGTA +CCGTTGAGACCAATGACTTATAAAGGAGCTGTGGATCTCAGCCACTTTTTAAAAGAAAAG +GGGGGACTGGATGGGTTAGTTTATTCTCAGAGAAGACAAGAGATCCTTGATCTGTGGGTC +TATCACACACAAGGATACTTCCCAGACTGGCAGAACTACACACCAGGACCAG +>CRF02_AG.GH.2003.0.GHNJ188.AB231896 AB231896 +TGGATGGGCTAATTTACGCCAAGAAAAGACAGGAGATCCTTGATCTATGGGTTTATCACA +CACAAGGATTCTTCCCAGATTGGCAGAACTACACACCAGGGCCAGGGGTTAGATACCCAC +TGACCTTCGGGTGGTGCTTCAAACTAGTACCAGTGGATCCAACAGAGGTAGAGGAAGCCA +ATGAAGGAGAGAACAACAGTTTATTACATCCCATCAGTCAGCATGGAATGGAGGACGAAG +ACAGAGAGACGCTGGTCTGGAGATTTGACAGCCACTTGGCCTTGAAACACAGAGCTCTAG +AGATGCATCCGGAGTTTTACAAAGACTGCTGACACAGAAGTTGCTGACACAGGAGTTGCT +GACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGTGTGGTTGGGGAGGAGTTTGGGAG +TGGCTAACCCTCAGATGCTGCATATAAGCAGCTGCTTCTCGCTTGTACTGGGTCTCTCTT +GCTAGACCAGATTTGAGCCTGGGAGCTCTCTGACTAGCAGGGGAACCCACTGCTTAAGCC +TCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGG +TAACTAGAGATCCCTCAGACTACTTTAGTCAGTGTAAAAATCTCTAGCAGTGGCGCCCGA +ACAGGGACCGGAAGTTAATAGGGACTCGAAAGCGAAAGTTCCAGAGAAGATCTCTCGACG +CACGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTAC +GCCAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTG +AGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAGG +TATAGGCTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCACTTAACCCT +GGCCTTTTAGAAACAGCAGAAGGATGTCAGCAAGCAATAGAACAGTTACAACCAGCTCTC +GGGACAGGAACAGAAGAACTCAAATCATTATTTAATACCATAGCAACCCTTTGGTGTGTA +CATAAAAGGATAGAGGTAAAAGACACCAAGGAAGCCTTAGATAAAATTGAGGAAGTACAA +AATAAGAGCAATAAGAGCAAGCAACAGACACAGCAGGCAGCAGCTGCAGCCGCCACAGGA +AGCAGCAGCCAAAATTTCCCTATAGTGCAAAATGCACAAGGGCAAATGACACATCAGTCC +ATGTCACCTAGGACTTTGAATGCATGGGTAAAGGTAATAGAAGAAAAGGCTTTCAGTCCA +GAAGTAATACCCATGTTTTCAGCATTATCAGAGGGAGCCACCCCACAAGATTTAAATATG +ATGCTAAACATAGTGGGGGGACACCAGGCAGCAATGCAGATGTTAAAAGATACCATCAAT +GAGGAAGCTGCAGAATGGGACAGGACACATCCAGTACATGCAGGGCCTATTCCACCAGGC +CAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAGCAA +GTAGGATGGATGACAAGCAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATA +GTCCTGGGATTAAATAAGATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGA +CAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGATAGGTTCTTTAAAACTTTGAGAGCT +GAACAAGCTACACAGGATGTAAAGAACTGGATGACAGAAACCTTGCTGGTCCAAAATGCG +AATCCAGACTGTAAGTCCATTTTAAGAGCAATGGGACCAGGGGCTACATTAGAAGAAATG +ATGACAGCATGTCAGGGAGTGGGAGGACCTAGCCATAAAGCAAGGGTCTTGGCTGAGGCA +ATGAGTCAAGCACAACAGGCCAACATAATGATGCAGAGAGGCAATTTTAGGGGCCAGAGA +ACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAAGGCACCT +AGGAAAAGAGGCTGTTGGAAATGTGGGAAGGAAGGACACCAAATGAAAGACTGCACTGAG +AGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGGAGGCCAGGAAATTTT +CCTCAAAGCAGGCCGGAACCAACAGCCCCTCCAGCAGAGAGCCTCGGGATGGGGGAAGAG +ATAACCTCCCCTCAGAAGCAGGAACCGAGGGACAAGGGATTATATCCTCCTTTAACTTCC +CTCAAATCACTCTTTGGCAACGACCCCTAGTCACAGTAAGAATAGGGGGACAGCCAATAG +AAGCCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTACCAGGAA +AATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGATC +AGATACTTATAGAAATTTGTGGAAAAAGGGCCATAGGTACAGTACTAGTAGGACCTACAC +CTGTCAACATAATTGGACGAAATATATTGACTCAGATTGGTTGTACTTTAAATTTTCCAA +TAAGTCCTATTGAAACTGTGCCAGTAAAATTAAAGCCAGGAATGGATGGTCCAAAGGTTA +AACAATGGCCTTTGACAGAAGAGAAAATAAAAGCCTTAACAGACATTTGTAATGAAATGG +AAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATATAACACTCCAGTATTTG +CCATAAAGAAAAAAGATAGTACCCAATGGAGAAAATTAGTAGATTTCAGGGAACTCAATA +AAAGAACTCAAGATTTCTGGGAGGTCCAATTAGGAATACCTCATCCCGCGGGGTTAAAAA +AGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTCTCAGTTCCCTTAGATA +AAGACTTTAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACCAGGGA +TTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAGG +CAAGCATGACAAAAATCTTAGAGCCCTTTAGAACAGAAAATCCAGAGATAGTGATTTACC +AATATATGGATGATTTATATGTAGGTTCTGACTTAGAGATAGGGCAACATAGAGCAAAAA +TAGAGGAGTTGAGAGAACATCTCCTGAGATGGGGGTTTACCACACCAGACAAAAAGCATC +AGAAAGAACCTCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTCC +AGCCTATACAGCTGCCAGAAAAAGACAGCTGGGCTGTCAATGATATACAGAAATTAGTGG +GAAAACTAAATTGGGCAAGTCAGATCTATGCAGGAATTAAAGTAAAACAATTGTGTAGAC +TCCTCAGGGGAGCCAAAGCGCTAACAGATATAGTACCACTGACTGAGGAGGCAGAATTAG +AATTGGCAGAGAACAGGGAAATTCTAAAAGAACCTGTACATGGGGTATACTATGACCCAA +CAAAAGACTTAATAGCAGAGATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTT +ACCAAGAGCCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGCCCACA +CTAATGATGTAAAACAGTTAACAGAGGTAGTGCAAAAAGCGGCTACAGAAAGCATAATAA +TATGGGGGAAGACCCCTAAATTTAGACTACCCATACCAAGAGAAACATGGGAAGCATGGT +GGATGGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTC +TAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAATAGGAGCAGAAACTTTCTATG +TAGATGGGGCAGCTAATAGGGAAACGAAGCTAGGAAAAGCAGGGTATGTCACTGACAGAG +GAAGACAAAAAGTTGTTTCCCTAACTGAGACAACAAACCAAAAGACTGAATTACATGCAA +TTCATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAGTATG +CATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGAGTTAGTCAATCAAATAA +TAGAGAAGCTAATAGGAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGGA +TTGGAGGAAATGAACAAGTGGATAAATTAGTCAGCAATGGAATCAGGAGAGTCCTATTTT +TAGATGGCATAGATAAAGCCCAAGAAGAGCATGAAAGATATCACAGCCATTGGAGAGCAA +TGGCCAGTGATTTTAATCTGCCACCTGTAGTAGCAAAAGAAATAGTGGCCTGCTGTGATA +AATGTCAGCTAAAAGGAGAAGCCATACATGGACAAGTAGACTGTAGTCCAGGAATATGGC +AATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTG +GCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACAGCATACTTTATAT +TAAAATTAGCAGGAAGATGGCCAGTGAAAGTAATACACACAGACAATGGCAGCAATTTCA +CCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAAGTATCACACAAGAATTTGGAATTC +CCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAGATTA +TAGGACAGGTCAGGGATCAAGCTGAACACTTGAAGACAGCAGTACAGATGGCAGTATTCA +TTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAG +ACATAATAGCCTCCGATATTCCAACTAAAGAGCTACAAAAACAAATTACAAAAATTCAAA +ATTTTCGGGTTTATTTCAGGGACAGCAGAGACCCCATTTGGAAAGGACCAGCAAAACTAC +TCTGGAAAGGTGAAGGGGCAGTAGTAATTCAAGACAATAGTGAGATAAAAGTAGTACCAA +GAAGAAAAGCAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGG +CAGGTAGACAGGATGAGGATTAGAACATGGAACAGTCTGGTAAAACATCATATGTATATC +TCTAAGAAAGCTAAAGGTTGGTTTTATAGACATCATCATGAAAGTAGGCATCCAAAAATA +TGTTCAGAAGTACACATCCCACTAGGGGATGCTATGTTAATAGTAAGAACATATTGGGGT +CTACATACAGGAGAAAGAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAG +AAAAGATACAGCACACAAATAGATCCTGACCTAGCAGACAACCTGATTCACCTGCATTAT +TTTGACTGTTTTTCAGACTCTGCCATAAGGAGAGCCATATTAGGACAAGTAGTTAGCCCT +AGATGTGAGTTTCAAGCAGGACACAATAAGGTAGGATCTCTGCAATATTTGGCACTGAAA +GCATTAGTAAAGCAGCCAAGGAGAAAGCCACCGTTGGCTAGTGTTAGGAAGTTAACAGAA +AATCGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGCCATTCAATGAATGGG +CACTAGAATTGTTAGAAGAGCTTAAACATGAAGCTGTCAGACATTTTCCTAGGCCGTGGC +TCCATGGATTAGGACAACACATCTATGAAACATATGGGGATACTTGGGAAGGGGTTGAAG +CTATAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCAACATA +GCAGAATAGGCATTATTCGAGGAAGAAGAGGCAGGAATGGAGCTGGTAGATCCTAGCCTA +GAGCCTTGGAACCACCCGGGAAGTCAGCCTACAACTGCTTGTAGCAAGTGTTACTGTAAA +ATGTGCTGCTGGCATTGCCAATTATGCTTTCTGACCAAGGGCTTAGGCATCTCCTATGGC +AGGAAGAAGCGGAGACGCCGACGAAGAACTCCTGAGAGCTGTCAGGATCATCAAAATCCT +GTATCAAAGCAGTGAGTAATAATAATCAGTATATGTAATGCAGTTTTCAGATCCTTTAAC +AATAGCTTCAATAGTAGGACTAGTAGTAGCAGTTATAGCAGCCATAGTTGTGTGGAGCAT +AGTATTGATAGAATATAGAAAAATAAGAAAACAGAAGAAAATAGACAGGATACTTAATAG +AATAAGAGAAAGAGCAGAAGATAGTGGTAATGAGAGTGATGGGGATACAGAAGAATTATC +CACCCTTCTGGAGATGGGGAATGGTGCTATTTTGGATATTGATAATTTGTAATGCTGAAA +ATTTGTGGGTCACGGTCTACTATGGGGTACCTGTGTGGAAAGAGGCAAATACCACCTTAT +TTTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTCTGGGCTACACATG +CCTGTGTACCCACAGACCCTAACCCACGAGAAATACTTATAGAAAATGTAACAGAAGAGT +TTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAAGATATAATTAGTCTATGGG +ACCAAAGCCTAATGCCATGTGTAAAGTTAACCCCTCTCTGTGTTACTTTAAATTGCTCTA +ACGTTATCAGCGGCACCTATAACAGCACCAATAATAACAGCACCTATAACATCAGCATCA +GTGCTGACATGAAAGGGGAAATAAAAAACTGCTCTTTCAATATGACCACAGAATTAAGAG +ATAAGAAACAGAATGTGTATGCACTTTTTTATAGACTTGATGTAGTACCAATTGATGCAA +AAAGTAGTAGTAATGTAAATAATAGTGATACAGGTAATAGTAGGAATACAAATAGTGGCA +GGGAGTATAGACTAATAAACTGCAATGCTTCAACCATTACACAGGCTTGTCCAAAGGTAT +CCTTTGAACCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTGAAGTGTA +ATGAGAAAACCTTCAATGGAACAGGGCCATGCAGGAATGTCAGCACAGTACAATGCACCC +ATGGAATCAAGCCAGTAGTATCAACACAACTGCTGTTGAATGGTAGTCTAGCAGAAAAAG +AGGTAGTGATTAGATCTGAAAATATCTCAGACAATGCCAAAATCATAATAGTACAGTTGA +ATGAAACTGTACAAATTAATTGTACCAGACCTGGCAACAATACAAGAAAAAGTATACATA +TAGGACCAGGGCAAGCATGGGATGCAACAACAAAAATAATAGGGGATATAAGAAAAGCAT +ATTGTAATGTCAGTAAAGCAAAATGGAATAGAACTTTACAACTGGTGGCTAGTAAATTAA +ATAAATACTTTAATAAGACAGAAATAATTTTTACTAATTCCTCAGGAGGAGATTTGGAAA +TTACAACACATAGTTTTAATTGTAGAGGAGAATTTTTCTATTGCGATACATCAGGGCTGT +TTAATAGCACTTGGGATAACATTACCAGTACAAATGGCACAAAGGTAAATGAAACTGAAA +CTATAACTCTCCCATGCAGAATAAAACAAATTGTAAGAATGTGGCAGAGAGTAGGACAAG +CAATGTATGCCCCTCCTATCCAAGGAGAACTACGGTGTGAATCAAATATTACAGGACTAC +TATTAACAAGAGATGGAGGGAATAATAATCGTACAAATGAGACCTTCAGGCCTATAGGAG +GAGATATGAAGGACAATTGGAGAAGTGAATTATATAAATATAAAGTGGTAAAAATTGAAC +CACTAGGTATAGCACCCTCCAGGGCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAG +TTGGACTGGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGCGG +CGTCATTAACGCTGACGGTACAGGCCAGACAATTATTGTCCGGTATAGTGCAACAGCAAA +GCAATTTGCTGAGGGCTATAGAGGCTCAACAACATCTGTTGAAACTCACAGTCTGGGGCA +TTAAACAGCTTCAGGCAAGAGTCCTGGCTCTGGAGAGATACCTAAGGGATCAACAGCTCC +TAGGAATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAACTCTA +GTTGGAGTAATAAAACCTATACTGACATATGGGACAACATGACCTGGCTGCAATGGGATA +AAGAAATTAGCAATTATTCAGACATAATATATAAGCTAATTGAAGACTCGCAGAGCCAGC +AGGAACAGAATGAACAAGACTTATTGGCATTGGACAAGTGGGAAAACCTGTGGAATTGGT +TTAGCATAACAAATTGGCTATGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTGA +TAGGTTTAAGAATAGTTTTTGCTGTGCTTACTATAATAAATAGAGTTAGGCAGGGATACT +CACCTTTGTCGTTCCAGACCCTTCCCCACCACCAGAGGGAACCCGACAGGCCCGAAAGAA +TCGAAGAAGGAGGTGGAGAGCAAGACAGAGACAGATCCGTGCGCTTAGTGAGCGGATTCT +TAGCACTTGCCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGAG +ACTTTGTCTTGATTGCAGTGAGGGCGGTGGAGCTTCTGGGGGAAGCCCTCAAATATCTGT +GGAACCTTCTGATATACTGGGGTCAGGAACTGAAGAATAGTGCTATTAGTTTGCTTGATA +CAATAGCAATAGCAGTAGCTAACTGGACAGATAGAGTTATAGAAATAGGACAAGGAGCTA +TTAGAGCTATTCGCAACGTACCTAGAAGAATAAGACAAGGCGCCGAAAGGTTTTTGCTAT +AACATGGGTGGAAAGTGGTCAAAAAGCAGCATAGTGGGATGGCCTAAGGTTAGGGAAAGA +ATAAGACAAACCCCTGTAGCAGCAGACACCCCTGGAGCAGCAAAAGGAGTAGGAGCAGCA +TCTCGAGATTTAGATAGACATGGAGCAATAACAAACAGCAATACATCAGCTACTAATGCT +GATGTTGCCTGGCTGGAAGCACAAGAGGATGAGGACGTAGGCTTTCCAGTCAGGCCACAG +GTACCTTTAAGACCAATGACTTATAAGGCAGCCTTCGATCTCAGCCACTTTTTAAAAGAA +AAGGGGGGACTGGAAGGGCTAGTTTACTCCAAGAAAAGACAGGAGATCCTTGATCTATGG +GTTTATCACACACAAGGATTCTTCCCAGATTGGCAGAACTACACACCAGGGCCAGGGGTT +AGATACCCACTGACCTTCGGGTGGTGCTTCAAACTAGTACCAGTGGATCCAACAGAGGTA +GAGGAAGCCAATGAAGGAGAGAACAACAGTTTATTACATCCCATCAGTCAGCATGGAATG +GAGGACGAAGACAGAGAGACGCTGGTCTGGAGATTTGACAGCCACTTGGCCTTGAAACAC +AGAGCTCTAGAGATGCATCCGGAGTTTTACAAAGACTGCTGACACAGAAGTTGCTGACAC +AGGAGTTGCTGACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGTGTGGTTGGGGAGG +AGTTTGGGAGTGGCTAACCCTCAGATGCTGCATATAAGCAGCTGCTTCTCGCTTGTACTG +GGTCTCTCTTGCTAGACCAGATTTGAGCCTGGGAGCTCTCTGACTAGCAGGGGAACCCAC +TGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGC +>CRF02_AG.CM.2001.0.01CM_0005BBY.AY371123 AY371123 +GCGAGAGCGTCAGTGTTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGG +CCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAGTATGGGCAAGCAGAGAGCTGGAA +AGATTCGCACTTAACCCTGGCCTTTTAGAAACAACAGAAGGATGTCAACAAATAATAGAA +CAGTTACAATCAAATCTCAAGACAGGATCAGAAGAAATTAAATCATTATACAATACAGTA +GTAGTCCTTTGGTGCGTACATCAAAAGATAGAGATAAAAGACACCAAGGAAGCCTTAGAT +AAATTAGAGGAAAAGCAAAATAAGAGCAAGCAACAGGCACAGCAGGCAGCAGCTGGCACA +GGAAGCTGCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATGGTACATAAC +CCCATGTCACCTAGGACTTTGAATGCATGGGTAAAGGTAGTAGAAGAAAAGGGATTCAGC +CCAGAAGTAATACCCATGTTTTCAGCATTATCAGAGGGAGCCACCCCACAAGATCTAAAT +ATGATGCTAAACATAGTGGGGGGACACCAGGCAGCAATGCAGATGTTAAAAGATACCATC +AATGAGGAAGCTGTAGAATGGGATAGAGCACATCCAGTACATGCAGGGCCTATTCCACCA +GGTCAAATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAG +CAAATGGGATGGATGACATCCAATCCACCTATCCCAGTGGGAGAAATCTATAAAAGATGG +ATAATCTTAGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATCTTGGACATA +AGACAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGATAGGTTCTTTAAAACTTTGAGA +GCTGAACAAGCTTCGCAGGAGGTAAAAAACTGGATGACAGAAACCTTGCTGGTCCAAAAT +GCGAATCCAGACTGTAAGTCCATTTTAAGAGCATTAGGATCAGGGGCTACATTAGAAGAA +ATGATGACAGCATGCCAGGGAGTGGGAGGACCTGGTCATAAAGCAAGGGTTCTGGCTGAG +GCAATGAGCCAAGTACAACAGACAAATGTAATGATGCAGAGAAGCAACTTTAGGGGCCAA +AGAACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAAGGCC +CCTAGGAAAAGGGGTTGTTGGAAATGTGGGAAGGAAGGACACCAAATGAAAGACTGCACT +GAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGGCCAGGGAAT +TTTCCTCAGAGCAGACCGGAGCCAACAGCCCCACCAGCAGAGAGCTTTGGGATGGGGGAA +GAGATATCCTCCTCTCCGAAGGAGGAACCGAGGGACAAGGGATTATATCCTCCCTTAGTT +TCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCAAAGTAAAAATAGGGGGACAGCTGA +TAGAAGCCCTGTTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTACCAG +GAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTGAGACAATATG +ATCAGATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTGTTAGTAGGACCTA +CACCTGTCAACATAATTGGACGAAATATGTTGACTCAGATTGGTTGTACTTTAAATTTTC +CAATTAGTCCTATTGAAACTGTGCCAGTAAAATTAAAGCCAGGAATGGATGGTCCAAAGA +TTAAACAATGGCCATTGTCAGAGGAAAAAATAAAAGCATTAACAGACATTTGTATGGAGA +TGGAAAAGGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATACTCCAGTAT +TCGCCATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTTAGAGAACTCA +ATAAAAGAACTCAAGACTTCTGGGAGGTCCAATTAGGAATACCTCATCCCGCAGGATTAA +AAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCCTTAG +ATAAAGAATTTAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACCAG +GAATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTC +AGGCTAGTATGACAAAAATCTTAGAGCCCTTTAGAACAAACAATCCAGAAATAGTGATTT +ACCAATATATGGATGATTTATATGTAGGTTCTGACTTAGAGATAGGGCAACATAGAGCAA +AAATAGAGGAGTTAAGAGAACATCTATTGAGATGGGGATTTACCACACCAGACAAAAAAC +ATCAGAAAGAACCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAG +TCCAGCCTATACATCTGCCAGAAAAAGACAGCTGGACTGTCAATGATATACAGAAATTGG +TGGGAAAACTAAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAAGCAACTGTGTA +GACTCCTCAGGGGAGCCAAAGCACTGACAGATATAGTACCACTGACTGAGGAAGCAGAAT +TAGAATTGGCAGAGAACAGGGAAATTTTAAAAGAGCCTGTACATGGAGTCTATTATGACC +CAGCAAAAGACCTAGTAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACGTATCAAA +TCTATCAAGAACCATTTAAAAATCTAAAAACAGGGAAATATGCAAAAAAGAGGTCTACTC +ACACTAATGATGTAAAACAATTAGCAGAAGTAGTGCAAAAAGTGACTACAGAAAGCATAG +TAATATGGGGAAAGGCCCCTAAGTTTAGACTACCCATACAAAAAGAAACATGGGAGGCAT +GGTGGATGGAGTATTGGCAGGCTACCTGGCTTCCTGACTGGGAATTTGTCAATACCCCTC +CTCTAGTAAAATTATGGTACCAGTTAGAGAAAGATCCAATAGTAGGGGCAGAAACTTTCT +ATGTAGATGGGGCAGCTAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTCACTGACA +AAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACAAATCAAAAGACTGAATTACATG +CAATTCATCTAGCCTTGCAAGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAGT +ATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGAGATAGTCAATCAAA +TAATAGAGAAGCTAATAGAAAAGGACAAAGTATATCTGTCATGGGTACCAGCACACAAAG +GAATTGGAGGTAATGAACAAGTAGATAAATTAGTCAGTAGTGGAATCAGGAAGGTATTAT +TTTTAGATGGCATAGATAGAGCCCAAGAAGAACATGAAAGATATCACAGCAATTGGAGAG +CAATGGCTAGTGATTTTAATCTGCCCCCTATAGTAGCAAAAGAAATAGTGGCCAGCTGTG +ATAAATGTCAGCTAAAAGGGGAAGCTATGCATGGACAAGTAGACTGTAGTCCAGGAATAT +GGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCATGGTAGCAGTCCATGTAGCCA +GTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATATTTTA +TATTAAAATTAGCAGGAAGATGGCCAGTGAAAGTAATACACACAGACAATGGCAGCAATT +TCACCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAAATGTCACACAAGAATTTGGAA +TTCCTTATAATCCCCAAAGCCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAAA +TTATAGTGCAGGTTAGGGATCAAGCTGAACACCTTAAGACAGCAGTACAGATGGCAGTAT +TCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAA +TAGACATAATAGCATCAGATATACAAACTAAAGAACTACAAAAACAAATTATAAAAATTC +AAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAAC +TACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGATATAAAGGTAGTTC +CAAGAAGAAAAGCAAAAATTATTAAGGATTATGGAAAACAGATGGCAGGTGATGATTGTA +TGGCAGGTAGACAGGATGAGAATTAGAACATGGAACAGTTTAGTAAAGCATCATATGTAT +GTCTCTAAGAAAGCTAAAAATTGGTTTTACAGACATCACTATGAAAGTAGGCATCCAAAA +TTAAGTTCAGAAGTACACATCCCACTAGGAGATGCTAGATTAGTAATAAGAACATATTGG +GGTCTGAATACAGGAGAAAGAGACTGGCACTTGGGTAGTGGGGTCTCCATAGAATGGAGA +CAGAGAAGATATAGCACACAAATAGATCCTGACCTAGCAGACCAACTGATTCACCTGCAT +TATTTTCACTGTTTTTCAGAATCTGCCATAAGGAAAGCCATATTAGGACAAGTAGTTAGA +CCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTACAATATTTGGCACTG +AAAGCATTAGTAACCCCAACAAAGATAAGGCCACCTTTGCCTAGTGTTAAGAAATTAACA +GAAGATAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGCCATTCAATGAAT +GGACATTAGAATTGTTAGAAGAGCTTAAACATGAAGCTGTTAGACATTTCCCTAGGCCAT +GGCTTCATGGATTAGGACAACATATCTATAACACATATGGGGACACTTGGGAAGGGGTTG +AAGCTATAATAAGAATATTACAACAGCTACTGTTTGTTCATTTCAGAATTGGGTGCCAAC +ATAGCAGAATAGGCATTATTCAGAGGAGAAGAGGCAGAAATGGATCCAGTAGATCCTAGA +CTAGAGCCCTGGAACCACCCGGGAAGTCAGCCTACAACTGCTTGTAGCAAATGTCATTGT +AAAGTGTGTTGCTGGCATTGCCAATTGTGCTTTCTGAACAAGGGCTTAGGCATCTCCTAT +GGCAGGAAGAAGCGGAGACGCCGACGAGGAACTCCTCAGAATCATCAGGACTATCAAAAT +CCTGTACCAGAGCAGTGAGTAGTATTAATTAGTATATGTGATGCAATCTTTACATATAGC +TGCCATAGTAGGACTAGTAGTAGCAGTCATAGCAGCCATAGTTGTGTGGACCATAGTAAT +TATAGAGTATAGGAAGATAAGAAAACAGAAGAAAATAGACAGGTTACTTGATAGAATAAG +TGAAAGAGCAGAAGATAGTGGCAATGAGAGTGAGGGGGACACAGAGGAATTATCCAAGCT +TATGGAAATGGGGAACTATGGTTTTTTGGGTAATAATAATTTGTAGTGCTGAAGATTTGT +GGGTCACGGTCTACTATGGGGTACCGGTGTGGAAAGACGCAGAGACCACCCTATTTTGTG +CATCAGATGCTAAAGCATATGAGAGAGAAGCACATAATGTCTGGGCTACACATGCCTGTG +TACCCACAGACCCCAGCCCACAAGAAATATATTTGGAAAATGTAACAGAACAGTTTAACA +TGTGGAAAAATAACATGGTAGAGCAGATGCATATAGATATAATTAGTCTATGGGACCAAA +GCCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGCGTTACTTTAGATTGTCACCCCCTTA +GCAAAAACATAACTACTGAAATGCAGGGGGAAATAAACAACTGCACTTTCAATATGACCA +CAGTATTAAGAGATAAGAAACAGAAAATGAGCGCACTTTTTTATAGACTTGATATAGAAA +AAATTAATGGAAATAATGATAGTGGAAAGAATGATAGTGGTCAGTATAGGTTAATAAATT +GTAATACCTCAGCCATTACACAGGCTTGTCCAAAAGTATCCTTTGAGCCAATTCCCATAC +ATTTTTGTGCTCCAGCTGGTTTTGCAATTCTGAAGTGTAATGAGGAGAAGTTCAATGGAA +CAGGGCTGTGCAAGAATGTCAGCACAGTACAATGCACACATGGAATTAAACCAGTAGTAT +CAACTCAACTGCTATTAAATGGCAGTCTAGCAGGAAAAGAAGTAATGATTAGATCTGAAA +ATATCACAAACAATGCCAAAACCATAATCGTACAGTTGAGTGAGCCTGTAAAAATTGAGT +GTACCAGACCTGGCAACAATACAAGAAAAAGTGTACGCATAGGACCAGGACAAACATTCT +ATGCAACAGGTGACATAATAGGGGATATAAGAAAAGCACATTGTAATGTCAATAAAACAG +AATGGGATAGAACTTTACAACAGGTAGCTACACAATTAAAAAAGTACTTTCGGAATGCCA +CAATAGCCTTTGCTAACTCCTCAGGAGGAGATGTAGAAATTACAACACATAGTTTTAATT +GTGGAGGAGAATTTTTCTATTGCAATACAACAGACCTATTTAATAGCACTTGGAACGAAA +CCACAGAGTCAAATGGCAATATGAATCTAACAATCCCATGCAGAATAAAACAATTTGTGA +ATTTGTGGCAGAAAGTAGGACAAGCAATGTATGCCCCTCCCATCCAAGGAGAAATAAGGT +GTGAATCAAACATTACAGGATTACTATTAACAAGAGATGGAGGGGTAAATAATAATAATA +GTACGGAGATATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTAT +ATAAGTATAAGGTAGTTCAAATTAAACCACTAGGTGTGGCACCTACCCATGCAAAACGAA +GAGTGGTGGAGAGAGAAAAAAGAGCAGTTGGAATAGGAGCTGTTTTCCTTGGGTTCTTAG +GAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGCACAGGCCAGACAAT +TATTGTCTGGTATAGTGCAACAGCAGAGCAATCTGCTGAGGGCTATAGAGGCTCAACAAC +ATCTGTTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTCTGG +AAAGATACCTAGGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCATCT +GCACCACTAATGTGCCCTGGAATACTAGTTGGAGTAAGAAAACTTATAAGGACATATGGG +AGAACATGACCTGGCTGCAATGGGATAGAGAAATTAGCAATTACACAAGCATAATATACA +ATCTAATTGAAGAATCGCAGAACCAGCAGGAAAAGAATGAACAAGAATTGTTGGCATTGG +ACAAGTGGGCAAGTCTGTGGAGTTGGTTTGACATCTCAAATTGGCTATGGTATATAAAAA +TATTTATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTACTGTGATTAATA +TAATAAAGAGAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGACCCTTACCCACCACC 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+++ b/data/community/neherlab/hiv-1/tree.json @@ -0,0 +1 @@ +{"version": "v2", "meta": {"title": "Nextclade dataset for HIV-1 subtypes", "updated": "2024-03-13", "build_url": "https://github.com/neherlab/nextclade_data_workflows", "data_provenance": [{"name": "LANL"}], "maintainers": [{"name": "Richard Neher", "url": "https://neherlab.org"}], "display_defaults": {"color_by": "clade_membership", "distance_measure": "div", "branch_label": "clade"}, "genome_annotations": {"INT": {"end": 4639, "seqid": "config/reference.gb", "start": 3776, "strand": "+", "type": "CDS"}, "RT-p51": {"end": 3415, "seqid": "config/reference.gb", "start": 2096, "strand": "+", "type": "CDS"}, "RT-p66": {"end": 3775, "seqid": "config/reference.gb", "start": 2096, "strand": "+", "type": "CDS"}, "gp120": {"end": 7303, "seqid": "config/reference.gb", "start": 5855, "strand": "+", "type": "CDS"}, "gp41": {"end": 8338, "seqid": "config/reference.gb", "start": 7304, "strand": "+", "type": "CDS"}, "nef": {"end": 8963, 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"E111G"], "tat": ["R7N", "K12N", "T23N", "N24K", "F32Y", "I39L", "A42G", "A58T", "H59P", "N61S", "T64D", "A67D", "S68P", "L69I", "S70P", "T74L", "P77T", "*87S"], "vif": ["K22N", "G33K", "R36K", "P47R", "R50K", "K91Q", "K92R", "E101G", "Y110H", "D117E", "L124I", "A151T", "I159T", "T167R", "K181R"], "vpr": ["H15Y", "I37P", "E48N", "A55E", "R77Q", "V83I", "T84I", "A93S"], "vpu": ["I4L", "P5L", "V13I", "I16L", "S24T", "I27F", "I33L", "L46I", "I47R", "E60D", "I61L", "S62E", "A63E", "G68-", "V69-", "E70-", "M71-", "G72-", "H73-", "H74-", "A75-", "D81N"]}, "labels": {"aa": "INT: D10E, L101I, T112V, G123S, T125A, R127K, K136Q, V201I, N232D, L234I, D256E, S283G; RT-p51: V35T, K173T, Q174K, D177E, T200A, Q207E, R211K, L214F, V245Q, E248D, R277K, T286A, E291D, V292I, I293V, G335D, R356K, G359S, T376A, K390R; RT-p66: V35T, K173T, Q174K, D177E, T200A, Q207E, R211K, L214F, V245Q, E248D, R277K, T286A, E291D, V292I, I293V, G335D, R356K, G359S, T376A, K390R, N460D, T468S, D471E, Y483H, L491S, Q512K, A534S, A554S; gp120: T3A, E4D, K5N, D34E, V56I, V59E, D71N, S100T, K102N, D105-, L106-, K107-, D109-, N111-, T112-, S114-, S115-, S116-, G117-, R118-, M119-, I120-, M121-, E122-, K123-, G124-, S134T, S136E, G139D, V141K, Q142K, E144V, F147L, K150R, I154V, D159N, T160N, T161N, K164R, T166I, S167N, V172T, N202D, T204K, T212K, R224K, V242I, V243I, V247E, F249I, T262E, R278S, R280H, Q282-, R283-, R287Q, V290Y, T291A, I292T, K294D, N297D, M298I, R307G, A308T, K309E, N312K, K315Q, I317V, S319K, E323K, Q324H, G326-, K334N, Q335P, P341L, V344T, S359T, T360S, Q361K, F368-, S370-, T371-, W372-, S373-, T374-, E375-, G376-, S377-, N378-, N379-, T380-, E381-, G382-, S383-, D384-, T385-, K401R, S412A, Q414N, R416T, S418N, S433N, E436-, S437N, I439T, Q479E; gp41: I4L, L7M, M24I, I69V, A96N, A101S, L108Y, E109D, Q110E, N113D, H114N, T115M, D121E, N125S, S129D, L130I, H132Y, S133R, E148D, E151A, N163D, T165S, L173I, V182I, H209L, L210I, T212N, R229Q, S241F, I245A, S251N, L263F, L264I, V267A, T268A, I270T, W285L, S293G, V301I, A306T, G324R, R330L, L340F, I343A; nef: V10I, I11V, T15A, V16I, M20I, A23T, E24P, D28E, R29G, A33V, R35Q, E38D, A53P, A54D, T71R, A83G, V85F, E98D, H102Y, Q104K, R105K, D108E, I114V, *124W, V133I, Y143F, E149D, D151K, K152E, I153V, K158E, T162N, S163C, V168I, S169C, L170Q, D174E, P176E, E182K, R184K, R188S, F191R, H192R, V194I, Y202F, F203Y, N205D; p1: Y9N; p17: E12K, R15A, K30R, I34L, V46L, S54A, R58K, L61I, S67A, R76K, I94V, K113Q, A115T, H124N, N126S; p2: V7A, S10-, T12-; p24: I6L, V27I, E71D, V83L, A92P, N120S, T148V, Y169F, S178T, E187D, A208G, G225S; p6: E12A, R16G, S17F, V19E, T21I, T23P, P24S, Q26-, P30Q, I31K, R42K, S50L; p7: R7K, N8G, K11R, T24I, R26K, K41R; pro: V3I, I13V, M36I, S37N, R41K, L89M; rev: I13L, R14K, T15A, L18I, L21I, P28Y, N30K, E47A, G61S, Y63C, S67P, T82H, D84N, N86S, L103S, T108A, E111G; tat: R7N, K12N, T23N, N24K, F32Y, I39L, A42G, A58T, H59P, N61S, T64D, A67D, S68P, L69I, S70P, T74L, P77T, *87S; vif: K22N, G33K, R36K, P47R, R50K, K91Q, K92R, E101G, Y110H, D117E, L124I, A151T, I159T, T167R, K181R; vpr: H15Y, I37P, E48N, A55E, R77Q, V83I, T84I, A93S; vpu: I4L, P5L, V13I, I16L, S24T, I27F, I33L, L46I, I47R, E60D, I61L, S62E, A63E, G68-, V69-, E70-, M71-, G72-, H73-, H74-, A75-, D81N"}}, "children": [{"name": "NODE_0000001", "node_attrs": {"div": 0.00278, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "NODE_0000002", "node_attrs": {"div": 0.02094, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A224G", "A261G", "-280G", "G282A", "C300T", "-305T", "-709G", "-711A", "-713C", "-714C", "G743A", "T746C", "T944G", "C974T", "C1005G", "G1199A", "A1205G", "A1230C", "T1237A", "T1253C", "A1263T", "G1328A", "C1362T", "T1403C", "-1459C", "C1610T", "A1656C", "C1730T", "A1733G", "C1756A", "G1760A", "A1840G", "A1906G", "T1996C", "A2005T", "G2008A", "G2273A", "T2393C", "C2467T", "G2470A", "G2473A", "A2727G", "C2828A", "C2839A", "C2845A", "A3151G", "C3303T", "A3385G", "G3391A", "A4076C", "C4079T", "A4112G", "T4321C", "C4471T", "A4543T", "C4786A", "G4835T", "T4967A", "C5162T", "T5203C", "C5213A", "G5236A", "A5548C", "A5557G", "T5611C", "A5622G", "G5626T", "A5644G", "T5688C", "C5704T", "G5706A", "T5708A", "A5728T", "-5791T", "T5828A", "A5848G", "T5850C", "C5869G", "C5884T", "G5954A", "T5964C", "G5972A", "T6024A", "T6046C", "A6073G", "-6171T", "T6181-", "T6187-", "-6340T", "C6347T", "G6605A", "G6732A", "A6776G", "A6825T", "C6826T", "T6827C", "-6833A", "-6834A", "-6835C", "T6838G", "A6840C", "C6850T", "T6876C", "-6955G", "-6959A", "-6961T", "-6962A", "-6965A", "-6966C", "-6986A", "-6987A", "-6988T", "-6989A", "G7040A", "C7064A", "A7106T", "A7158G", "G7160-", "-7164A", "A7239G", "G7291A", "G7307A", "G7309A", "T7357G", "G7366A", "A7375G", "A7399G", "G7428A", "G7552A", "C7561T", "T7575A", "A7626T", "G7627A", "G7640A", "A7676G", "G7677A", "A7689G", "A7691T", "G7702C", "A7722T", "G7729A", "C7742A", "C7747A", "C7755A", "C7775T", "G7790A", "T7796A", "A7880T", "T7913C", "T7930C", "A7931C", "A7937G", "A7938C", "C7969A", "A7998G", "A8014G", "T8028C", "G8036A", "C8047T", "C8051A", "C8092A", "C8112T", "G8180A", "T8209C", "T8323G", "T8585C", "T8607C", "T8608A", "C8640T", "A8812C", "A8870G", "G8914T", "G8917A"], "INT": ["I101L", "I113V", "E256D"], "RT-p51": ["E40D", "V60I", "K211R", "D248E", "D250E", "T377M"], "RT-p66": ["E40D", "V60I", "K211R", "D248E", "D250E", "T377M", "T403M"], "gp120": ["E34K", "V37A", "V40I", "V57E", "E265T", "R322G", "K323N", "H324L", "N334K", "L341P", "-368N", "-370S", "-371T", "-373S", "-378N", "-380T", "R401G", "N418S", "N432A", "K462R"], "gp41": ["V2I", "I24L", "L91H", "Y108L", "S125D", "D129G", "I130L", "R133S", "N140T", "Q147K", "D148E", "A151E", "D163N", "S165T", "I193L", "I210L", "N212A", "L242S", "A245I", "F263L", "T270I", "G293I", "I329V"], "nef": ["D38E", "A50T", "N157T", "S188R", "R191L", "R192K"], "p2": ["-10S"], "p24": ["D71E", "P92A", "F169Y", "T178S", "D187E"], "p6": ["P23-", "S24P", "-26Q"], "p7": ["V13I"], "pro": ["I36M"], "rev": ["E11D", "I18L", "Y28P", "K30S", "S56G", "C63Y", "P67S", "A68E", "H82N", "G111D"], "tat": ["E2D", "T58P", "D64A", "L74S", "T77P", "S87*"], "vif": ["I66V", "T67K", "Q83H"], "vpu": ["L5V", "V7L", "I13V", "L34K", "R41W", "-73H", "-75A", "N81D"]}, "labels": {"aa": "INT: I101L, I113V, E256D; RT-p51: E40D, V60I, K211R, D248E, D250E, T377M; RT-p66: E40D, V60I, K211R, D248E, D250E, T377M, T403M; gp120: E34K, V37A, V40I, V57E, E265T, R322G, K323N, H324L, N334K, L341P, -368N, -370S, -371T, -373S, -378N, -380T, R401G, N418S, N432A, K462R; gp41: V2I, I24L, L91H, Y108L, S125D, D129G, I130L, R133S, N140T, Q147K, D148E, A151E, D163N, S165T, I193L, I210L, N212A, L242S, A245I, F263L, T270I, G293I, I329V; nef: D38E, A50T, N157T, S188R, R191L, R192K; p2: -10S; p24: D71E, P92A, F169Y, T178S, D187E; p6: P23-, S24P, -26Q; p7: V13I; pro: I36M; rev: E11D, I18L, Y28P, K30S, S56G, C63Y, P67S, A68E, H82N, G111D; tat: E2D, T58P, D64A, L74S, T77P, S87*; vif: I66V, T67K, Q83H; vpu: L5V, V7L, I13V, L34K, R41W, -73H, -75A, N81D"}}, "children": [{"name": "results/subtype_trees/CRF50_A1D.nwk", "node_attrs": {"div": 0.08924, "clade_membership": {"value": "CRF50_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G102-", "T103-", "G104-", "T105-", "G106-", "T107-", "G108-", "C109-", "C110-", "C111-", "G112-", "T113-", "C114-", "T115-", "G116-", "T117-", "T118-", "G119-", "T120-", "G121-", "T122-", "G123-", "A124-", "C125-", "T126-", "C127-", "T128-", "G129-", "G130-", "T131-", "T155C", "A161G", "G166A", "C287A", "T288C", "A301G", "G354A", "T377C", "G378A", "A386G", "A389G", "A428G", "C435T", "A458G", "C462A", "T476C", "C477T", "G481A", "A497G", "C503A", "A518G", "G520A", "A521C", "C525T", "T539C", "C540A", "A541G", "T549A", "A562G", "T567C", "A571T", "T596C", "A605G", "A606C", "G608A", "G629A", "A632G", "T636C", "G644A", "A655T", "A656G", "C662T", "A665G", "T668A", "A682C", "G683A", "A686G", "C698T", "A706G", "T718C", "C731T", "G755A", "T789C", "A815G", "G818A", "C827T", "C902T", "G1016A", "A1073G", "G1090A", "C1094T", "A1115G", "G1139A", "T1166C", "C1229T", "A1289C", "C1292A", "C1331T", "G1354C", "T1385C", "T1427C", "C1439T", "A1442G", "C1444T", "A1446C", "C1447A", "A1449C", "A1450C", "-1452A", "-1458A", "C1492A", "A1493G", "G1495A", "A1499G", "T1504-", "T1505-", "A1536C", "A1543G", "A1580G", "G1588A", "A1592G", "G1661A", "T1679C", "T1682C", "A1740G", "C1745A", "-1746C", "-1747C", "-1748T", "C1749-", "C1750-", "C1751-", "T1752C", "A1781G", "G1794A", "T1828C", "A1841G", "A1870G", "C1914A", "T1954C", "T2062C", "T2071C", "C2083T", "T2095C", "A2113G", "A2182G", "A2215T", "C2281A", "C2296T", "T2299C", "A2332G", "T2335C", "T2347A", "C2356T", "T2386A", "A2389G", "G2392T", "C2452T", "G2456C", "T2499C", "G2518A", "T2521C", "A2566G", "A2578G", "A2579G", "G2580C", "A2612T", "C2615A", "G2630A", "T2632A", "T2653C", "C2671T", "G2704A", "A2710G", "A2713G", "A2715C", "A2716T", "G2728C", "C2740T", "A2743C", "A2755G", "T2776C", "A2794G", "C2797A", "A2809G", "A2818C", "A2828G", "A2829T", "A2830G", "G2872A", "A2881G", "G2902A", "C2909G", "A2932G", "T2944C", "G2951A", "C2968T", "C2975A", "C2978T", "A2986G", "A3001G", "A3031C", "A3034T", "A3037G", "C3067T", "T3112C", "T3121C", "A3124G", "T3139C", "G3142A", "A3162G", "G3165A", "G3166C", "C3175T", "T3197C", "C3207T", "A3208G", "A3217G", "A3218G", "A3220G", "C3225T", "A3226G", "C3232T", "A3268G", "A3304G", "G3307C", "C3319T", "G3340A", "A3370G", "G3379A", "A3391C", "T3399A", "A3409G", "T3412A", "T3433C", "A3439G", "A3463G", "T3469C", "A3478G", "A3490G", "C3496T", "G3520A", "T3530C", "A3532G", "A3535T", "T3541C", "C3577T", "A3616G", "T3628C", "G3643A", "C3665A", "T3668C", "A3674G", "A3675G", "G3679A", "A3682C", "G3685A", "A3706G", "G3718A", "A3727C", "A3755T", "T3757C", "G3766A", "A3769G", "A3772G", "A3775G", "G3796A", "G3836A", "G3859A", "A3877G", "T3889C", "A3931G", "T3943C", "A3952G", "T3970C", "A3973C", "T3977C", "A3979G", "T3991A", "C3994T", "C4006T", "G4060A", "A4063G", "T4117C", "G4156A", "G4175A", "G4176A", "A4195G", "A4219G", "C4258T", "G4262A", "G4263C", "G4267A", "A4475C", "A4531G", "T4585C", "G4607A", "A4608G", "C4667T", "T4679C", "T4691A", "G4695A", "G4696A", "A4697T", "T4701G", "A4717T", "T4799G", "G4816A", "A4838G", "A4858T", "G4859A", "G4878A", "C4883T", "G4888A", "C4889A", "T4891A", "T4925C", "A4968G", "T4976C", "C5006T", "G5030A", "C5038A", "T5043C", "A5046G", "A5056C", "A5059G", "T5073C", "A5089T", "A5134C", "G5153C", "C5160T", "A5161G", "G5167T", "T5170G", "G5176A", "G5179T", "A5186C", "A5200G", "A5210C", "C5221T", "C5227A", "A5233G", "T5292C", "A5312G", "C5361G", "A5362G", "C5371G", "A5372C", "A5375G", "C5406T", "C5412T", "T5415C", "A5418G", "A5432C", "G5433T", "T5436A", "G5437C", "A5444C", "T5454C", "C5478T", "A5480C", "T5483C", "A5493G", "C5495A", "G5496C", "G5534A", "A5560G", "G5561A", "A5576T", "-5620G", "G5647A", "A5652G", "A5659C", "C5679T", "A5694G", "A5696G", "G5700A", "A5708G", "G5712A", "A5721G", "T5731C", "C5763T", "G5784A", "C5797A", "G5800-", "T5801-", "G5802-", "G5803-", "A5804-", "A5805-", "T5807-", "G5808-", "-5812T", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5827G", "C5859T", "A5867C", "A5947G", "G5948T", "C5998A", "G6028A", "A6037C", "T6049C", "A6065G", "T6101C", "T6109C", "A6142T", "T6148C", "A6158C", "C6160A", "C6165G", "T6166C", "-6167A", "-6170A", "-6172C", "-6173A", "-6174C", "-6175T", "-6180A", "-6181C", "T6184A", "-6187C", "T6193C", "A6197-", "-6208A", "-6210T", "-6212A", "-6213T", "-6214A", "-6215G", "-6217G", "-6218G", "-6220C", "-6221A", "-6222G", "-6223G", "-6225A", "-6226A", "T6246A", "A6262G", "A6263C", "A6268G", "G6277A", "A6278C", "A6283G", "G6284A", "G6290T", "G6311A", "G6314A", "T6315C", "A6324G", "A6333G", "G6346A", "T6385C", "T6445C", "G6481A", "A6490G", "T6511C", "G6532A", "A6544G", "G6572A", "C6619T", "G6631A", "A6635G", "A6636T", "T6637C", "G6638A", "A6639G", "A6640T", "T6641C", "A6646G", "A6649C", "A6654G", "A6659G", "C6660T", "A6661T", "C6667T", "A6682G", "-6689G", "G6716A", "A6730T", "A6742G", "T6760C", "A6767G", "T6769C", "G6773A", "G6776T", "A6820G", "A6836C", "A6865G", "C6874T", "T6883C", "C6888T", "A6889G", "C6922T", "A6936G", "A6937C", "T6949C", "-6952T", "-6956A", "-6957A", "-6958T", "-6960A", "-6963G", "-6964C", "-6967T", "-6968C", "-6969G", "-6970G", "-6980G", "-6981T", "-6982G", "-6983T", "-6984C", "-6985A", "-6990G", "-6991C", "-6993C", "-6994A", "-6995C", "-6996G", "-6997G", "-6998T", "-6999T", "-7000A", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "-7006C", "-7009T", "C7012A", "A7015T", "C7020A", "C7096G", "C7127T", "G7132A", "-7160C", "-7162G", "C7171T", "T7222C", "A7241C", "A7255T", "G7256C", "A7275G", "A7290C", "G7357A", "A7373C", "A7420G", "G7459A", "C7463T", "A7552C", "T7604A", "T7609C", "G7628C", "T7630G", "T7636C", "C7645T", "C7690T", "G7717A", "T7722C", "A7744G", "A7747G", "T7748C", "G7765A", "C7801A", "A7858G", "G7862A", "C7906T", "A7918G", "G8061T", "C8120G", "T8122C", "C8146A", "C8147A", "T8155C", "C8156T", "G8181T", "C8213T", "A8216G", "C8223T", "C8232T", "A8241G", "G8242C", "G8243T", "T8268G", "G8276A", "C8277T", "T8279G", "A8311C", "C8320T", "T8321G", "T8322C", "G8323A", "G8329A", "C8336A", "A8342C", "C8351T", "T8369C", "T8375G", "C8386A", "T8387G", "A8390T", "A8408T", "A8409G", "G8424C", "A8425C", "G8429A", "A8441T", "C8450T", "A8455C", "G8465A", "C8471T", "C8485T", "G8487-", "C8488-", "A8489-", "C8491-", "T8492-", "C8494A", "T8495C", "A8496C", "T8498C", "G8502A", "A8503G", "C8504T", "T8507C", "A8522G", "G8531C", "A8537G", "A8555G", "T8558A", "G8561A", "T8568C", "T8582A", "G8590C", "T8594C", "T8597G", "C8702T", "C8720T", "T8747C", "C8751T", "G8753A", "C8756A", "G8774A", "T8789G", "A8793G", "G8798A", "A8804G", "G8805A", "C8810T", "T8813C", "A8816G", "T8832C", "T8843G", "G8846A", "C8849T", "G8864T", "G8875A", "G8882A", "A8886C", "T8887A", "A8909G", "G8915A", "A8954G", "C8966T", "G8970A", "-8971G", "-8974G", "A8977G", "C8978A", "A8979C", "C9012T", "C9017T", "C9018T", "G9026A", "A9027G", "C9028T", "A9095T", "T9109-", "T9115C"], "INT": ["A21T", "G134N", "G163T", "I234L", "D278S"], "RT-p51": ["D121H", "I135T", "S162A", "T173S", "V179I", "E207A", "R211S", "Q245V", "P272A", "A286T", "P294T", "E312D", "K356R", "M357N", "A371V", "I375V", "T397P", "T403M", "E404D", "E432D", "V435E"], "RT-p66": ["D121H", "I135T", "S162A", "T173S", "V179I", "E207A", "R211S", "Q245V", "P272A", "A286T", "P294T", "E312D", "K356R", "M357N", "A371V", "I375V", "T397P", "E404D", "E432D", "V435E", "Q480H", "K512R", "Q524K", "K527G", "E529D"], "gp120": ["A2V", "D4E", "N5Q", "A32S", "E57D", "N71D", "N102Q", "T104S", "-105N", "-106I", "-107T", "-109N", "-111N", "F131Y", "I137L", "K142Q", "V144I", "A146S", "V154T", "D157G", "N160S", "N161S", "E241D", "D251N", "N261D", "E262S", "S263P", "T265N", "N267S", "T269V", "H280R", "A288T", "I305V", "G307R", "T308S", "F325L", "T345M", "K361G", "-379S", "-381E", "-382L", "-383N", "-384D", "-385N", "P389Q", "-436Q", "I463L", "V468I", "K472R", "K474R"], "gp41": ["R74S", "S101T", "D109Q", "M118I", "V187I", "D230G", "D232G", "N251S", "A268T", "L273V", "R276H", "L282I", "L304F", "N305D", "T307I", "A310V", "E313G", "G314W", "V322G", "A325I", "C326G", "F340A", "L345I"], "nef": ["A15E", "I20M", "T23A", "E28P", "E38A", "T48I", "A49N", "T51P", "N52S", "P53-", "D54-", "E63D", "G83A", "D149E", "K151E", "E155K", "E174D", "R178K", "K182Q"], "p1": ["N9H"], "p17": ["V7I", "P48S", "G49D", "K58Q", "I61M", "G62D", "Q69R", "S72T", "K76R", "Y79F", "E107V", "S111R", "Q116P", "N124S", "V128A"], "p2": ["A7V", "T8Q", "A11-"], "p24": ["S120N", "E180D", "G208A", "S225G", "V230I"], "p6": ["I21V", "L50S"], "p7": ["R10K", "I13-", "I24L", "K26R", "R41K"], "pro": ["I15V", "P39Q", "L63P"], "rev": ["D7N", "V16I", "I21F", "T91S", "S92P", "P100N", "S103L"], "tat": ["K19T", "A21P", "N23T", "Q35P", "V36A", "T40N", "R53K", "S61G", "S62D", "D67V"], "vif": ["M8V", "G37N", "F39V", "Y44F", "R77K", "Q91L", "V98I", "G101E", "L102Q", "H127Q", "I128V", "T151K", "I154V", "K157T", "K158R", "T159I", "K168I", "T170A", "H183P", "M189I", "H192C"], "vpr": ["E17Q", "T19M", "E21D", "E25D", "N28H", "P37T", "I63T", "I70V", "Q86G", "A89G"], "vpu": ["V14I", "I18L", "Y30C", "K34R", "L61R", "V65S", "E66T", "-68L", "-70E", "-71M", "-72G", "-74D"]}, "labels": {"aa": "INT: A21T, G134N, G163T, I234L, D278S; RT-p51: D121H, I135T, S162A, T173S, V179I, E207A, R211S, Q245V, P272A, A286T, P294T, E312D, K356R, M357N, A371V, I375V, T397P, T403M, E404D, E432D, V435E; RT-p66: D121H, I135T, S162A, T173S, V179I, E207A, R211S, Q245V, P272A, A286T, P294T, E312D, K356R, M357N, A371V, I375V, T397P, E404D, E432D, V435E, Q480H, K512R, Q524K, K527G, E529D; gp120: A2V, D4E, N5Q, A32S, E57D, N71D, N102Q, T104S, -105N, -106I, -107T, -109N, -111N, F131Y, I137L, K142Q, V144I, A146S, V154T, D157G, N160S, N161S, E241D, D251N, N261D, E262S, S263P, T265N, N267S, T269V, H280R, A288T, I305V, G307R, T308S, F325L, T345M, K361G, -379S, -381E, -382L, -383N, -384D, -385N, P389Q, -436Q, I463L, V468I, K472R, K474R; gp41: R74S, S101T, D109Q, M118I, V187I, D230G, D232G, N251S, A268T, L273V, R276H, L282I, L304F, N305D, T307I, A310V, E313G, G314W, V322G, A325I, C326G, F340A, L345I; nef: A15E, I20M, T23A, E28P, E38A, T48I, A49N, T51P, N52S, P53-, D54-, E63D, G83A, D149E, K151E, E155K, E174D, R178K, K182Q; p1: N9H; p17: V7I, P48S, G49D, K58Q, I61M, G62D, Q69R, S72T, K76R, Y79F, E107V, S111R, Q116P, N124S, V128A; p2: A7V, T8Q, A11-; p24: S120N, E180D, G208A, S225G, V230I; p6: I21V, L50S; p7: R10K, I13-, I24L, K26R, R41K; pro: I15V, P39Q, L63P; rev: D7N, V16I, I21F, T91S, S92P, P100N, S103L; tat: K19T, A21P, N23T, Q35P, V36A, T40N, R53K, S61G, S62D, D67V; vif: M8V, G37N, F39V, Y44F, R77K, Q91L, V98I, G101E, L102Q, H127Q, I128V, T151K, I154V, K157T, K158R, T159I, K168I, T170A, H183P, M189I, H192C; vpr: E17Q, T19M, E21D, E25D, N28H, P37T, I63T, I70V, Q86G, A89G; vpu: V14I, I18L, Y30C, K34R, L61R, V65S, E66T, -68L, -70E, -71M, -72G, -74D", "clade": "CRF50_A1D"}}, "children": [{"name": "JN417241", "node_attrs": {"div": 0.11998, "accession": "JN417241", "clade_membership": {"value": "CRF50_A1D"}, "country": {"value": "GB"}, "date": {"value": 2010.0}, "Strain_name": {"value": "11762"}, "LANL_subtype": {"value": "CRF50_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["T201C", "T258C", "C377T", "A419G", "T422C", "G428A", "A509G", "A513T", "C521A", "C596T", "G605A", "G632A", "A645G", "A678C", "C682A", "A697C", "C718T", "T731C", "A818G", "T827C", "T902C", "C1289T", "A1343C", "C1385T", "A1418G", "G1419A", "C1427T", "G1487A", "C1491A", "A1495G", "G1498A", "G1499C", "A1564G", "G1580A", "A1601G", "T1610G", "A1614T", "A1661G", "T1791C", "G1835A", "G1870A", "A1920G", "G2027A", "A2038T", "C2095T", "T2146C", "G2177A", "A2178G", "A2189G", "T2215A", "G2389A", "A2398G", "C2456G", "G2462A", "A2463G", "C2488T", "C2521T", "C2589T", "A2629G", "T2824C", "G2830A", "A2864G", "A2951G", "A2969G", "T2978A", "G3001A", "G3010A", "A3043G", "T3067C", "A3283G", "T3358A", "G3439A", "G3532A", "T3550C", "A3630G", "A3643G", "G3667A", "C3727A", "A3816G", "C3826T", "A3836G", "G3891A", "C3970T", "G3989A", "T4240C", "A4243G", "G4272A", "C4585T", "T4606C", "A4625G", "G4677A", "G4701T", "T4717A", "T4769G", "A4817G", "T4883C", "C4899A", "A5005C", "T5062G", "C5125T", "C5134A", "G5185A", "G5211A", "A5282C", "T5286C", "A5305G", "A5336G", "T5478C", "C5483T", "C5548A", "C5549A", "A5556G", "G5557A", "A5561G", "A5570C", "T5576A", "A5581C", "C5602T", "C5614G", "T5621G", "G5652A", "C5659T", "C5756A", "A5784T", "G5794A", "T5826C", "T5843C", "C5850A", "G5853A", "G5869A", "G5947A", "C5974T", "C6158A", "A6160T", "C6166T", "A6167G", "C6174G", "G6179A", "C6187G", "A6188G", "-6189T", "-6194G", "-6195T", "-6196C", "-6197A", "-6198G", "-6199C", "A6208-", "T6210-", "-6216A", "G6222A", "A6228C", "A6232G", "A6246T", "A6276G", "A6277C", "T6285C", "G6323A", "A6326G", "A6338G", "G6339A", "T6340G", "G6379A", "C6397T", "T6457G", "T6541C", "A6572G", "G6577C", "C6607T", "A6631G", "T6636A", "G6659A", "A6668G", "A6669G", "G6689A", "A6723T", "T6730A", "A6732G", "A6734G", "T6735A", "A6736T", "G6741T", "G6742A", "G6779A", "A6788G", "A6799C", "C6800A", "G6819T", "A6822G", "C6823T", "C6836A", "T6853A", "A6856C", "C6925T", "A6962G", "C6968G", "G6970C", "-6971A", "-6972G", "-6973C", "-6974C", "-6975T", "-6976G", "-6977C", "-6978A", "-6979G", "T6981G", "A6989G", "C6995G", "A7089C", "G7096C", "T7099C", "A7148G", "A7149C", "T7150A", "A7155G", "G7162T", "T7171C", "T7192C", "C7201G", "C7290A", "A7348T", "T7403C", "A7572G", "T7622A", "C7625T", "A7627T", "A7640G", "A7644G", "G7657A", "G7658C", "G7689A", "A7717G", "A7720G", "G7744A", "G7747T", "A7799C", "C7931T", "C7939A", "G7992A", "G8055A", "T8061G", "A8069C", "G8070T", "A8093C", "A8098G", "G8105A", "G8130A", "A8204G", "A8271T", "A8288G", "G8348T", "T8371G", "A8388G", "A8405G", "G8436T", "A8459G", "G8466A", "A8468G", "A8469G", "C8473A", "A8475T", "C8480T", "A8484C", "-8487T", "-8488A", "-8489C", "-8490A", "-8491C", "-8492A", "A8493C", "A8494C", "C8495A", "C8496A", "A8497G", "C8498T", "C8499-", "C8500-", "T8501-", "A8502-", "G8503-", "T8504-", "G8508A", "C8509T", "G8522A", "A8549G", "G8554C", "A8570G", "G8579A", "A8586G", "A8587G", "G8588T", "C8594T", "T8596G", "A8655C", "T8751A", "G8795A", "C8913T", "A8915T", "A8917C", "G8929A", "G8954A", "C9093A", "A9106G", "C9121A", "G9127T"], "INT": ["K14R", "T21A", "S39N", "V72I", "R166K", "R284G"], "RT-p51": ["E28R", "K32E", "D40E", "H121D", "D123S", "T165I", "I178M", "I257V", "T286A", "I292V", "L295M", "P397T"], "RT-p66": ["E28R", "K32E", "D40E", "H121D", "D123S", "T165I", "I178M", "I257V", "T286A", "I292V", "L295M", "P397T"], "gp120": ["Q102N", "N105D", "T107S", "N111K", "-112V", "-114V", "-115S", "-120I", "-121E", "-123K", "-124E", "E125A", "I126M", "Y131F", "K141S", "I144T", "N158D", "S162E", "T172A", "N201K", "V269I", "N272G", "Y290F", "K312E", "Q316K", "G322M", "N323G", "N327-", "K334L", "P335N", "-372G", "-375Q", "-376G", "-377S", "S379G", "E381G", "N385T", "S418L", "N434S", "N435S", "Q436H", "D449E", "I468L"], "gp41": ["S74R", "K90R", "S107T", "L108F", "N114S", "E119Q", "G129D", "E148D", "N166Q", "L210F", "G230D", "S251N", "S256L", "I264L", "I301V", "Q323L"], "nef": ["I10R", "I16V", "A32S", "A42T", "I43V", "T44K", "S45C", "I48L", "N49Y", "A56I", "R71T", "M79I", "K82G", "F85W", "K105Q", "L137I", "C163S", "L191F", "K192T"], "p17": ["I60L", "D62E", "I104V", "T115P", "P116Q", "D121A", "A128V"], "p2": ["N9P", "S10T", "-12T"], "p7": ["Q9K", "K10R", "R11N", "K33R", "D48E", "T50S"], "pro": ["V13I", "K41R", "V77I"], "rev": ["D11E", "L12I", "K14R", "I16V", "I19L", "F21I", "P28L", "P31T", "Q74P", "N82T", "N84D", "S86N"], "tat": ["A36V", "P58N", "G61S", "D62G", "H65P", "V67D", "I69L", "P77H"], "vif": ["V7A", "V31I", "V39F", "F44Y", "D61E", "Q105K", "N140T", "I159R", "T180I", "P183H"], "vpr": ["R36Q", "I60L", "I61T"], "vpu": ["P3A", "V5G", "A50E", "R61K", "V79A", "D81E"]}, "labels": {"aa": "INT: K14R, T21A, S39N, V72I, R166K, R284G; RT-p51: E28R, K32E, D40E, H121D, D123S, T165I, I178M, I257V, T286A, I292V, L295M, P397T; RT-p66: E28R, K32E, D40E, H121D, D123S, T165I, I178M, I257V, T286A, I292V, L295M, P397T; gp120: Q102N, N105D, T107S, N111K, -112V, -114V, -115S, -120I, -121E, -123K, -124E, E125A, I126M, Y131F, K141S, I144T, N158D, S162E, T172A, N201K, V269I, N272G, Y290F, K312E, Q316K, G322M, N323G, N327-, K334L, P335N, -372G, -375Q, -376G, -377S, S379G, E381G, N385T, S418L, N434S, N435S, Q436H, D449E, I468L; gp41: S74R, K90R, S107T, L108F, N114S, E119Q, G129D, E148D, N166Q, L210F, G230D, S251N, S256L, I264L, I301V, Q323L; nef: I10R, I16V, A32S, A42T, I43V, T44K, S45C, I48L, N49Y, A56I, R71T, M79I, K82G, F85W, K105Q, L137I, C163S, L191F, K192T; p17: I60L, D62E, I104V, T115P, P116Q, D121A, A128V; p2: N9P, S10T, -12T; p7: Q9K, K10R, R11N, K33R, D48E, T50S; pro: V13I, K41R, V77I; rev: D11E, L12I, K14R, I16V, I19L, F21I, P28L, P31T, Q74P, N82T, N84D, S86N; tat: A36V, P58N, G61S, D62G, H65P, V67D, I69L, P77H; vif: V7A, V31I, V39F, F44Y, D61E, Q105K, N140T, I159R, T180I, P183H; vpr: R36Q, I60L, I61T; vpu: P3A, V5G, A50E, R61K, V79A, D81E"}}}, {"name": "CRF50_A1D_NODE_0000001", "node_attrs": {"div": 0.08933, "clade_membership": {"value": "CRF50_A1D"}}, "branch_attrs": {"mutations": {"nef": ["T50H"]}, "labels": {"aa": "nef: T50H"}}, "children": [{"name": "JN417239", "node_attrs": {"div": 0.10677, "accession": "JN417239", "clade_membership": {"value": "CRF50_A1D"}, "country": {"value": "GB"}, "date": {"value": 2003.0}, "Strain_name": {"value": "33365"}, "LANL_subtype": {"value": "CRF50_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G148C", "A152C", "C153G", "T156G", "T163G", "-167A", "A170T", "T172C", "C173T", "T182G", "T200C", "G361C", "C426A", "G497A", "A557G", "G654A", "T662G", "A663G", "A697C", "A932G", "A1259G", "G1419A", "C1449T", "C1535T", "A1586G", "T1646C", "-1749T", "-1750C", "-1751C", "A1839G", "C1853T", "A2311G", "T2434C", "A2617T", "A2626C", "A2630G", "G2909C", "A2925G", "G3037A", "G3098A", "A3099G", "G3217A", "T3225C", "G3226A", "C3266-", "T3267-", "G3268-", "A3284C", "G3290-", "T3341A", "G3370A", "A3386-", "A3399T", "A3412G", "C3444A", "G3478A", "A3642G", "A3665G", "A3910G", "C4076A", "A4130C", "G4131C", "G4145A", "A4176G", "T4240C", "C4428T", "A4474T", "C4475A", "A4495G", "A4505G", "G4582A", "T4656C", "A4693G", "C4715T", "A4721C", "G4774A", "C4833A", "A4860G", "A4863G", "A4877G", "C4911A", "G4913A", "A5005C", "A5045T", "A5048G", "A5057T", "T5078C", "A5093C", "T5162C", "G5211A", "A5213C", "C5251T", "C5306T", "A5385G", "A5534G", "C5548T", "T5627C", "T5636C", "A5689C", "A5702G", "A5787T", "T5788A", "T5789G", "T5791-", "C5792G", "C5795G", "-5799T", "-5800A", "-5801T", "-5802C", "-5803A", "-5804A", "-5805C", "-5806A", "-5807A", "-5808T", "-5809G", "-5810T", "G5811T", "T5812G", "C5851A", "G5875A", "G5876T", "G6023A", "A6060G", "G6165A", "A6176G", "A6188-", "C6190-", "A6191-", "A6192-", "C6193-", "-6200A", "-6201G", "-6202C", "-6203A", "-6204G", "-6205C", "-6206A", "-6207C", "-6209G", "-6211C", "T6213G", "-6216G", "G6223T", "A6276G", "A6281G", "G6368A", "G6403T", "A6430G", "C6445T", "G6458-", "A6459-", "T6460-", "A6461-", "A6462-", "G6463-", "A6464-", "A6465-", "C6487T", "T6522A", "G6526C", "C6528G", "A6529G", "A6573C", "A6596G", "A6616G", "C6618A", "G6639A", "A6683C", "C6729A", "G6731A", "T6733A", "A6780C", "T6916C", "G6935C", "G6936A", "T6961C", "T6967A", "G6969A", "G6990A", "G6996A", "T7127A", "G7182C", "A7268G", "C7397A", "G7399A", "A7525C", "A7553G", "G7657T", "G7676A", "G7701A", "C7722T", "A7782G", "A7791G", "A7801T", "T8060C", "G8105A", "T8214A", "G8255A", "A8288G", "G8427A", "T8450C", "T8471C", "C8509T", "C8531T", "A8582G", "A8584T", "C8590G", "A8653G", "C8684T", "A8701T", "T8702C", "T8740C", "A8746T", "T8786A", "G8796A", "A8798G", "C8812A", "G8830C", "T8833G", "A8846G", "G8870A", "G8905A", "C8906A", "T8923G", "G8929T", "C8934A", "A8950T", "T9073C", "C9075G", "C9108-", "-9109T", "G9116C", "G9118C"], "INT": ["L101I", "S119P", "A124T", "N134S", "T218I", "L234I", "K244E"], "RT-p51": ["K174N", "E177D", "I179V", "A272P", "K277R", "D335S", "M377T", "L391-", "E399-"], "RT-p66": ["K174N", "E177D", "I179V", "A272P", "K277R", "D335S", "M377T", "L391-", "E399-"], "gp120": ["W7*", "V8F", "D57N", "K69R", "S104N", "N108D", "N109D", "N113-", "-114S", "-115S", "-116T", "-117V", "-118R", "-119G", "-120D", "-121S", "-122E", "K141R", "K143E", "E183D", "D202-", "K203-", "K204-"], "gp41": ["Q32K", "I84V", "D113N", "D125N", "S133N", "T140I", "N160S", "N163S", "H276R", "F304Y", "V318I"], "nef": ["G29R", "A56V", "Y81F", "A83G", "K104R", "I133T", "Y135F", "E152K", "C163T", "L164R", "I168M", "I194R", "R196L", "L198M", "Y203F"], "p17": ["S9T", "L31M", "N109K", "K110E", "D121A"], "p2": ["N9-", "-11T", "-12T"], "p6": ["-23P", "P24S"], "pro": ["K14R"], "rev": ["N7D", "S86N"], "tat": ["K53R", "P58S"], "vif": ["K36R", "E45D", "R63K", "H83N", "R92G", "R93G", "N140T"], "vpr": ["R36Q", "T37P", "S94G"], "vpu": ["L7S", "V10A", "I28L", "K32R", "E62-"]}, "labels": {"aa": "INT: L101I, S119P, A124T, N134S, T218I, L234I, K244E; RT-p51: K174N, E177D, I179V, A272P, K277R, D335S, M377T, L391-, E399-; RT-p66: K174N, E177D, I179V, A272P, K277R, D335S, M377T, L391-, E399-; gp120: W7*, V8F, D57N, K69R, S104N, N108D, N109D, N113-, -114S, -115S, -116T, -117V, -118R, -119G, -120D, -121S, -122E, K141R, K143E, E183D, D202-, K203-, K204-; gp41: Q32K, I84V, D113N, D125N, S133N, T140I, N160S, N163S, H276R, F304Y, V318I; nef: G29R, A56V, Y81F, A83G, K104R, I133T, Y135F, E152K, C163T, L164R, I168M, I194R, R196L, L198M, Y203F; p17: S9T, L31M, N109K, K110E, D121A; p2: N9-, -11T, -12T; p6: -23P, P24S; pro: K14R; rev: N7D, S86N; tat: K53R, P58S; vif: K36R, E45D, R63K, H83N, R92G, R93G, N140T; vpr: R36Q, T37P, S94G; vpu: L7S, V10A, I28L, K32R, E62-"}}}, {"name": "CRF50_A1D_NODE_0000002", "node_attrs": {"div": 0.09314, "clade_membership": {"value": "CRF50_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G261A", "A265G", "C1459A", "G1664A", "G1739A", "A1804G", "C3166A", "A3192G", "A3200G", "C3201T", "G3221A", "A3808C", "G4982T", "C5554A", "C6004T", "A6180C", "-6189A", "-6194A", "-6195C", "A6228G", "T6523C", "T6640C", "T6733C", "A6818G", "G6821A", "-6971A", "-6972A", "-6973T", "G7712A", "C8005A", "C8477T", "C8791A", "T8867C", "C8948T"], "INT": ["E11D"], "gp120": ["E240K", "D261V", "I279V", "G293D", "N328Q", "K329T"], "nef": ["P150Q"], "p6": ["P25S", "K42R"], "rev": ["H53N"], "tat": ["Q60K"], "vif": ["R132S"]}, "labels": {"aa": "INT: E11D; gp120: E240K, D261V, I279V, G293D, N328Q, K329T; nef: P150Q; p6: P25S, K42R; rev: H53N; tat: Q60K; vif: R132S"}}, "children": [{"name": "JN417240", "node_attrs": {"div": 0.11998, "accession": "JN417240", "clade_membership": {"value": "CRF50_A1D"}, "country": {"value": "GB"}, "date": {"value": 2010.0}, "Strain_name": {"value": "12792"}, "LANL_subtype": {"value": "CRF50_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["T159A", "T201C", "A256-", "G365C", "A412G", "G413A", "A470T", "T477C", "A508T", "T525A", "G656A", "A692G", "A699G", "G703C", "A708T", "C747T", "A803T", "G944T", "G977A", "C1000-", "T1001-", "G1192A", "A1240G", "A1418G", "A1445G", "C1449T", "A1452T", "C1550T", "T1583C", "G1736A", "C1744T", "-1749T", "-1750C", "-1751C", "C1752-", "C1753-", "T1754-", "T1792C", "A1794G", "A1839G", "A1855G", "A1867C", "A1981G", "A2014C", "G2027A", "A2063C", "G2180C", "T2195C", "A2210G", "A2222G", "T2237A", "G2328-", "T2476C", "C2499T", "G2566A", "A2773G", "G2932A", "C2942A", "T2968A", "A2985C", "C3100T", "C3112T", "G3151A", "T3225G", "A3283G", "T3310C", "A3412G", "C3475T", "C3504A", "A3522T", "A3529G", "G3563A", "C3567T", "A3583C", "A3621T", "A3642G", "G3675A", "T3695G", "A3703G", "G3706A", "C3712T", "A3724G", "A3816G", "A3886G", "G3907A", "A3910G", "A4051G", "T4288C", "A4372G", "G4388T", "A4391T", "T4426C", "A4495G", "C4501G", "G4553C", "G4616A", "A4650C", "T4656A", "T4670C", "G4673A", "G4677A", "C4728A", "T4738C", "G4774A", "A5007C", "T5089A", "A5112G", "A5159G", "T5160C", "G5161A", "C5168A", "C5214T", "G5226A", "G5257A", "A5436T", "T5439G", "A5535G", "A5545G", "G5629T", "T5636C", "C5651T", "C5653T", "T5654C", "C5659A", "G5696A", "G5699A", "A5702G", "T5728A", "C5851A", "T5860A", "G5872A", "A5957G", "A5965T", "G6133A", "T6163C", "C6174A", "-6206A", "-6207G", "-6209A", "-6211T", "T6213G", "G6215-", "G6222A", "C6247T", "G6262T", "G6303A", "G6323A", "G6324A", "A6326G", "T6328A", "A6332C", "G6333A", "T6340C", "G6345A", "A6354G", "G6368A", "G6403A", "C6412T", "T6436G", "T6457G", "A6464G", "C6548T", "G6577T", "T6636C", "A6706G", "C6729A", "G6743A", "A6773G", "G6779A", "A6810G", "A6811G", "G6865A", "C6951T", "A6960G", "T6961C", "T6967A", "C6968T", "-6974A", "-6975G", "-6976C", "-6977A", "-6978C", "-6979A", "T6981A", "C6984T", "C6995G", "G6996A", "C7008A", "C7101T", "T7106A", "T7107G", "A7155C", "G7158A", "T7172C", "A7183G", "G7212A", "A7246G", "C7256A", "G7276A", "T7400C", "C7429T", "T7463C", "A7487G", "A7525T", "A7572G", "A7640G", "T7691G", "C7805T", "G7937A", "C7954A", "C8028T", "A8029G", "G8030A", "C8044A", "T8047C", "T8060G", "G8120A", "C8122T", "G8130A", "A8152G", "G8173A", "G8240A", "T8256C", "C8311A", "A8336C", "G8354A", "A8360C", "T8366A", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "T8389C", "A8391G", "G8392A", "G8394A", "G8407C", "A8468G", "A8484G", "G8597T", "A8604G", "C8607T", "A8608T", "T8770A", "A8821G", "A8829T", "T8849C", "C8904A", "T8914G", "A8918G", "T8966C", "T9073C", "C9078T"], "INT": ["K14R", "A205S", "T206S", "V260L", "V281M"], "RT-p51": ["E29Q", "T39A", "K43E", "S48T"], "RT-p66": ["E29Q", "T39A", "K43E", "S48T"], "gp120": ["T35A", "T107N", "N109A", "-112N", "-114T", "-123K", "-124E", "E125G", "E136D", "R150K", "G157N", "N158E", "S160H", "R164K", "N167S", "N201K", "K204E", "V261A", "T292N", "D293N", "D297N", "R307G", "E309K", "K319R", "T366I", "N369S", "-372W", "-374T", "-375E", "-376L", "A412E", "N414K", "T416I", "S418R", "F440L", "S453N", "E479A"], "gp41": ["I62V", "K90R", "I118M", "L130V", "E137K", "N166K", "A212T", "D217E", "S242L", "A243T", "D247E", "C253V", "T268A", "V273I", "G313S", "V318A", "V329I", "I345L"], "nef": ["S8R", "S9V", "I10G", "V11W", "G12P", "W13E", "P14T", "I16K", "E18M", "R21G", "R22P", "I48V", "S88G", "H89F", "F143Y", "E160G", "R188S", "L191R"], "p17": ["A15T", "K26R", "S48P", "Q58L", "L64I", "T122A", "G123A", "S125C"], "p2": ["N9S", "-11N"], "p24": ["E71D"], "p6": ["T22I", "L38S", "T39A"], "pro": ["K14R", "V77I", "M89L"], "rev": ["N7S", "S30N", "Q36K", "S61D", "S67P", "V71G", "S91N", "P92S", "I102V", "V109I"], "tat": ["R57G", "T82K"], "vif": ["N22H", "L24I", "M29I", "V31I", "H48N", "I51T", "R63K", "K141Q", "I168K", "K176E", "C192H"], "vpr": ["Q3R", "M19A", "L22M", "T37I", "G41E"], "vpu": ["A8S", "V10A", "A15V", "L16S", "L18I", "C30Y", "R31K", "K32R", "W41R", "T66A", "L82M"]}, "labels": {"aa": "INT: K14R, A205S, T206S, V260L, V281M; RT-p51: E29Q, T39A, K43E, S48T; RT-p66: E29Q, T39A, K43E, S48T; gp120: T35A, T107N, N109A, -112N, -114T, -123K, -124E, E125G, E136D, R150K, G157N, N158E, S160H, R164K, N167S, N201K, K204E, V261A, T292N, D293N, D297N, R307G, E309K, K319R, T366I, N369S, -372W, -374T, -375E, -376L, A412E, N414K, T416I, S418R, F440L, S453N, E479A; gp41: I62V, K90R, I118M, L130V, E137K, N166K, A212T, D217E, S242L, A243T, D247E, C253V, T268A, V273I, G313S, V318A, V329I, I345L; nef: S8R, S9V, I10G, V11W, G12P, W13E, P14T, I16K, E18M, R21G, R22P, I48V, S88G, H89F, F143Y, E160G, R188S, L191R; p17: A15T, K26R, S48P, Q58L, L64I, T122A, G123A, S125C; p2: N9S, -11N; p24: E71D; p6: T22I, L38S, T39A; pro: K14R, V77I, M89L; rev: N7S, S30N, Q36K, S61D, S67P, V71G, S91N, P92S, I102V, V109I; tat: R57G, T82K; vif: N22H, L24I, M29I, V31I, H48N, I51T, R63K, K141Q, I168K, K176E, C192H; vpr: Q3R, M19A, L22M, T37I, G41E; vpu: A8S, V10A, A15V, L16S, L18I, C30Y, R31K, K32R, W41R, T66A, L82M"}}}, {"name": "JN417236", "node_attrs": {"div": 0.10252, "accession": "JN417236", "clade_membership": {"value": "CRF50_A1D"}, "country": {"value": "GB"}, "date": {"value": 2000.0}, "Strain_name": {"value": "8179"}, "LANL_subtype": {"value": "CRF50_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G301A", "A354G", "A378G", "C426A", "T572C", "A585G", "C586T", "T591C", "A645G", "C710A", "A919C", "A931T", "A932G", "G944A", "A959T", "A986G", "G998C", "C999T", "G1205A", "C1289T", "A1586G", "C1613T", "C1752T", "G1766T", "A1903C", "A1945G", "A1990G", "A2311G", "T2383C", "T2434C", "A2463G", "T2497C", "A3284C", "C3405-", "A3630G", "A3876G", "G3989A", "A4025G", "C4132A", "C4871T", "G5143-", "C5144-", "C5145-", "A5146-", "T5147-", "A5148-", "T5162A", "T5167G", "T5194A", "T5286C", "A5712G", "C5731T", "A5784T", "G5794A", "C5824T", "C5850T", "A6059G", "A6113G", "T6142A", "T6175C", "C6183A", "A6184C", "-6196A", "-6197G", "-6198T", "-6199C", "-6200A", "-6201G", "-6202A", "-6203G", "-6204G", "-6205G", "-6206G", "-6207T", "-6209C", "-6211G", "-6216A", "G6218A", "A6219G", "G6223A", "A6232C", "A6270T", "G6283A", "A6284G", "A6286G", "T6322A", "A6330G", "T6341A", "A6342G", "C6369T", "A6461G", "A6822G", "A6957T", "A6962G", "-6978A", "-6979T", "T7105C", "G7663A", "A7782G", "A7790G", "A7799C", "G7831A", "T7852C", "C8044G", "G8110A", "T8156G", "T8164C", "A8191G", "G8208A", "T8214A", "T8232C", "T8320C", "C8412G", "A8417T", "G8418C", "G8508A", "A8549G", "A8584T", "T8595G", "A8653G", "A8656G", "T8740C", "C8831A", "A8875G", "A8950T", "T9012G", "A9099T", "G9116C", "C9125T"], "INT": ["K34R", "V72I", "I84V", "S119R"], "RT-p51": ["D123G", "N357K", "K366R", "T369V", "A376T"], "RT-p66": ["D123G", "N357K", "K366R", "T369V", "A376T"], "gp120": ["K69E", "S87G", "N159S", "Y163S", "T172V", "K203E", "D241E", "D294I", "N323S", "N368I", "S370G", "-372R", "S373N"], "nef": ["A26P", "A56T", "Y81F", "F85V", "K104R", "K105R", "I133T", "C163R", "K178R", "Y203F"], "p17": ["I7V", "L31M", "T84V", "Y86H", "I104V", "S125R"], "p2": ["Q8T", "S10-"], "p24": ["Q63P", "Q67L", "P90S", "I230V"], "p6": ["E29D"], "pro": ["E35D", "I64M"], "rev": ["R66G", "D88N", "L103R", "S106P", "K115E"], "vif": ["S186-", "H187-", "C192*"], "vpr": ["E13D", "P14-", "Y15-", "L20I", "D21E", "I61T"], "vpu": ["H73Y"]}, "labels": {"aa": "INT: K34R, V72I, I84V, S119R; RT-p51: D123G, N357K, K366R, T369V, A376T; RT-p66: D123G, N357K, K366R, T369V, A376T; gp120: K69E, S87G, N159S, Y163S, T172V, K203E, D241E, D294I, N323S, N368I, S370G, -372R, S373N; nef: A26P, A56T, Y81F, F85V, K104R, K105R, I133T, C163R, K178R, Y203F; p17: I7V, L31M, T84V, Y86H, I104V, S125R; p2: Q8T, S10-; p24: Q63P, Q67L, P90S, I230V; p6: E29D; pro: E35D, I64M; rev: R66G, D88N, L103R, S106P, K115E; vif: S186-, H187-, C192*; vpr: E13D, P14-, Y15-, L20I, D21E, I61T; vpu: H73Y"}}}]}]}]}, {"name": "NODE_0000006", "node_attrs": {"div": 0.03406, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T258C", "A399C", "G495T", "C507A", "C537A", "C603G", "T641C", "C672A", "A678G", "T1334C", "G1404A", "-1452T", "-1455G", "-1456C", "-1457T", "G1498A", "-1503A", "A1532G", "C1541A", "T1676C", "A2063T", "G2155A", "A2241G", "A2305G", "A2341G", "G2431T", "C2613A", "C2638T", "G2693A", "G2707A", "A2788T", "C2806T", "C2885T", "T2899C", "A2969G", "T3002C", "G3127A", "A3334G", "C3567T", "C3589T", "G3787A", "A4159C", "C4181A", "G4622A", "G4727A", "T4769A", "T4776C", "A5090G", "G5094A", "G5099A", "G5128A", "A5187G", "G5225A", "A5246G", "C5248A", "T5263C", "A5268C", "C5333T", "A5432G", "T5490C", "-5799T", "-5806A", "G6121A", "G6133A", "T6151C", "T6163C", "-6167G", "A6232G", "A6281C", "T6322A", "T6427C", "G6481C", "A6535G", "A6553G", "C6613T", "A6664G", "A6712G", "T6733A", "T6892C", "A6910G", "-6964T", "-6990A", "-6991T", "-7009A", "A7094C", "A7095T", "C7101A", "A7102C", "T7107C", "A7123G", "G7269A", "C7579T", "G8055A", "A8191G", "A8219G", "C8294A", "G8335A", "G8402A", "C8406A", "C8412G", "C8413A", "A8446G", "T8451C", "A8453G", "T8456A", "C8477T", "-8490A", "A8652C", "T8867C", "G8868C", "A8869C"], "INT": ["Q136K", "G283S"], "RT-p51": ["K49R", "T173K", "K174Q", "A200T", "I292V"], "RT-p66": ["K49R", "T173K", "K174Q", "A200T", "I292V"], "gp120": ["I126M", "K143Q", "T172A", "T308A", "N414L", "T416N", "-436S"], "gp41": ["D113N", "T306A", "H331N"], "nef": ["P24D", "Q35R", "K104Q", "E176P"], "p17": ["A54S", "L68I", "Q90E", "Q113K", "T115A"], "p2": ["-12A"], "p6": ["P25S"], "p7": ["Q9P", "R11K"], "pro": ["M89L"], "tat": ["K19R"], "vif": ["D61E", "H110Y", "R181K"], "vpr": ["N28S", "G41S", "N48E", "E55A"], "vpu": ["D60E", "E62S", "-74H"]}, "labels": {"aa": "INT: Q136K, G283S; RT-p51: K49R, T173K, K174Q, A200T, I292V; RT-p66: K49R, T173K, K174Q, A200T, I292V; gp120: I126M, K143Q, T172A, T308A, N414L, T416N, -436S; gp41: D113N, T306A, H331N; nef: P24D, Q35R, K104Q, E176P; p17: A54S, L68I, Q90E, Q113K, T115A; p2: -12A; p6: P25S; p7: Q9P, R11K; pro: M89L; tat: K19R; vif: D61E, H110Y, R181K; vpr: N28S, G41S, N48E, E55A; vpu: D60E, E62S, -74H"}}, "children": [{"name": "results/subtype_trees/CRF21_A2D.nwk", "node_attrs": {"div": 0.07679, "clade_membership": {"value": "CRF21_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["A380C", "G407A", "G534T", "A571T", "G614T", "A674C", "A680G", "A704G", "T734C", "C746T", "C747G", "T748C", "G752A", "A759T", "T760G", "A785G", "T788C", "A803C", "A810G", "G818A", "G829A", "A914T", "T936C", "T1040C", "G1078C", "A1089G", "G1184A", "A1196G", "C1211T", "T1271A", "T1299C", "A1329T", "A1337G", "G1346A", "T1422C", "G1424A", "T1451C", "C1460-", "A1461G", "A1595G", "T1616G", "A1670G", "A1691G", "G1736A", "T1790C", "G1840A", "A1951G", "A2023G", "T2071C", "A2215T", "A2227G", "C2281T", "T2302C", "C2353T", "T2365C", "G2456A", "A2457G", "C2485T", "A2566G", "C2749T", "A2842G", "A2845G", "T2890C", "G2914A", "A2929G", "G2951A", "T2983A", "A3043G", "T3049C", "G3142A", "G3165A", "G3211A", "C3225T", "A3226G", "A3230G", "G3231C", "G3250A", "C3266T", "A3292G", "A3304G", "C3319T", "T3368C", "G3385A", "A3457G", "A3463G", "T3469C", "T3472G", "G3491A", "A3502G", "T3505G", "G3520A", "T3541C", "C3542T", "C3545T", "A3547G", "G3553A", "A3574G", "A3616G", "A3630G", "G3664A", "A3674G", "A3675G", "A3684G", "T3742C", "A3755T", "A3772G", "C3773T", "C3826T", "A3845C", "G3846A", "T3850C", "G3866A", "T3962C", "T3970C", "T4039C", "A4063G", "C4076A", "T4085C", "G4112A", "C4129G", "A4130C", "G4131C", "C4140T", "T4147A", "G4148C", "A4195G", "C4201T", "A4228G", "A4264G", "T4288C", "G4353A", "G4354C", "C4396T", "A4419G", "G4459A", "A4498C", "G4573A", "C4667T", "G4677A", "A4697T", "T4703C", "A4735G", "A4737G", "A4760G", "A4769G", "G4779A", "A4786G", "T4805C", "A4806T", "G4816A", "T4826C", "A4838G", "G4861A", "A4865G", "C4871T", "G4878A", "G4888A", "C4889T", "A4901T", "T4907C", "T4925C", "C4965G", "A5021G", "C5034T", "C5038A", "A5046G", "A5049G", "A5051T", "C5052G", "A5059G", "T5062C", "T5073C", "T5084A", "C5149T", "C5203T", "C5242T", "C5303T", "C5351T", "A5352G", "T5452C", "A5480C", "A5560G", "A5576T", "-5620C", "T5621A", "T5626A", "T5636C", "C5653A", "T5654C", "G5700A", "A5702G", "A5703G", "T5704A", "A5718G", "G5730T", "G5784A", "G5794A", "C5795A", "A5866C", "G5869T", "T5870C", "A5896G", "G5902A", "A5908G", "A5955C", "T5980C", "A6001G", "T6025A", "A6037G", "-6180A", "T6184C", "-6218C", "-6220G", "-6222C", "-6223A", "-6226A", "A6229G", "A6261T", "A6263G", "G6311A", "A6329G", "A6456G", "T6457A", "C6563T", "A6580C", "A6648T", "C6670T", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "A6730C", "T6745C", "C6800A", "A6801G", "A6810T", "C6827T", "G6838A", "T6916C", "C6925T", "T6949C", "-6952A", "-6957A", "-6960G", "-6963G", "-6971A", "-6973T", "-6974A", "-6976T", "-6978A", "-6979A", "-6980T", "-6982G", "-6983T", "-6984A", "-6985A", "A6989G", "C7045T", "G7054A", "G7056A", "T7087C", "A7089C", "A7152C", "-7160A", "-7162T", "A7198G", "A7252G", "A7275G", "C7429T", "G7459A", "A7477G", "C7510T", "C7511T", "C7582T", "G7633C", "A7640C", "T7642G", "G7658C", "T7691A", "T7692A", "C7699T", "A7720G", "A7818G", "A7832G", "A7885G", "T7921C", "A7989G", "G7998A", "C8106T", "T8138A", "G8139A", "C8145G", "A8184G", "G8264A", "T8281C", "A8311C", "G8323C", "T8369C", "G8385A", "A8426T", "T8440C", "T8498C", "T8501A", "C8504T", "T8507C", "A8522G", "T8546C", "A8555G", "T8558A", "A8564G", "T8582C", "G8666A", "C8720T", "T8747C", "G8753A", "C8756A", "G8774A", "A8793T", "A8794C", "G8795T", "C8810T", "A8816G", "G8834A", "G8861A", "G8870T", "T8887G", "C8903T", "G8905A", "A8909G", "C8934A", "C8957T", "-8971T", "-8974T", "G8991A", "A9005-", "C9017A", "C9028A", "G9030T", "C9108T"], "INT": ["S24H", "V31I", "V113I", "S119P", "T122I", "A125P", "G193D", "K215R"], "RT-p51": ["D121S", "Q245K", "A286T", "D291E", "M357K", "S379A", "T403M"], "RT-p66": ["D121S", "Q245K", "A286T", "D291E", "M357K", "S379A", "V466I", "K476R", "H483Y", "S491L", "K512R", "K527G", "K530R"], "gp120": ["T21N", "-114S", "-116S", "E125-", "E136V", "I137V", "K141R", "N159D", "N201R", "K277Q", "D294K", "Q316R", "K319I", "I332T", "S360T", "N369S", "-379N", "G401E", "A432T", "N433T", "K474R"], "gp41": ["L24V", "E110D", "N113Q", "N126K", "L130Q", "T140I", "I177V", "Q229R", "A268V", "W279K", "A281G", "I293G", "Q294R", "V321I", "V329I"], "nef": ["A15T", "E28D", "V33A", "K39R", "K151S", "C163S", "M173I", "K182R", "L198M"], "p17": ["L46I", "A67S", "Y79F", "E93D"], "p2": ["I13V"], "p24": ["L6A", "M10W", "I27V", "S33N", "G116A", "E187D", "T200S"], "rev": ["I21F", "V97E", "S99R", "D111G", "K115E"], "tat": ["Y26H", "Q35T", "S62D", "D67V"], "vif": ["V31I", "K50R", "I51V", "V65I", "K67R", "T74S", "R77K", "R92K", "V98I", "G101D", "Q105H", "H127E", "I128L", "T151K", "I154V", "T155A", "P156A", "K158R", "T188I"], "vpr": ["I83V"], "vpu": ["V5Q", "L7I", "V10A", "L16T", "K32R", "L33I", "W41C", "E63K"]}, "labels": {"aa": "INT: S24H, V31I, V113I, S119P, T122I, A125P, G193D, K215R; RT-p51: D121S, Q245K, A286T, D291E, M357K, S379A, T403M; RT-p66: D121S, Q245K, A286T, D291E, M357K, S379A, V466I, K476R, H483Y, S491L, K512R, K527G, K530R; gp120: T21N, -114S, -116S, E125-, E136V, I137V, K141R, N159D, N201R, K277Q, D294K, Q316R, K319I, I332T, S360T, N369S, -379N, G401E, A432T, N433T, K474R; gp41: L24V, E110D, N113Q, N126K, L130Q, T140I, I177V, Q229R, A268V, W279K, A281G, I293G, Q294R, V321I, V329I; nef: A15T, E28D, V33A, K39R, K151S, C163S, M173I, K182R, L198M; p17: L46I, A67S, Y79F, E93D; p2: I13V; p24: L6A, M10W, I27V, S33N, G116A, E187D, T200S; rev: I21F, V97E, S99R, D111G, K115E; tat: Y26H, Q35T, S62D, D67V; vif: V31I, K50R, I51V, V65I, K67R, T74S, R77K, R92K, V98I, G101D, Q105H, H127E, I128L, T151K, I154V, T155A, P156A, K158R, T188I; vpr: I83V; vpu: V5Q, L7I, V10A, L16T, K32R, L33I, W41C, E63K", "clade": "CRF21_A2D"}}, "children": [{"name": "AY945737", "node_attrs": {"div": 0.11138999999999999, "accession": "AY945737", "clade_membership": {"value": "CRF21_A2D"}, "country": {"value": "KE"}, "date": {"value": 1991.0}, "Strain_name": {"value": "KNH1254"}, "LANL_subtype": {"value": "CRF21_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["A431G", "C471A", "T476C", "G520T", "A619G", "C641A", "C679T", "G690A", "G702A", "G703A", "G755A", "G770A", "G987A", "G989A", "G1019A", "A1112G", "C1136T", "T1182C", "A1448G", "A1450G", "-1458G", "-1460T", "A1544G", "C1613T", "A1619G", "A1643G", "A1644G", "A1762G", "C1775-", "A1776-", "A1777-", "G1794A", "A1841G", "C1986T", "T2053C", "T2215G", "G2341A", "G2392A", "A2470G", "T2476C", "T2499C", "A2641G", "A2693G", "G2704A", "G2728A", "G2761A", "T2770A", "T2776C", "A2825G", "G2837A", "G2872A", "A2881G", "C2941T", "A2962G", "C2968A", "G3004A", "C3067A", "A3136G", "G3166C", "C3252T", "G3264A", "G3290A", "G3316A", "G3334T", "C3359T", "A3388G", "T3399C", "G3564A", "C3649T", "G3766A", "T3778C", "G3869A", "A3890T", "G4060A", "T4074G", "T4075G", "G4145A", "C4357T", "A4519T", "C4534G", "G4581A", "A4608G", "G4631A", "A4684G", "G4696A", "T4701G", "G4719C", "A4763G", "G4765A", "G4774A", "G4859A", "A4863G", "C4898T", "C4914T", "G4965A", "A4966G", "A4968T", "G4981A", "T5003C", "A5005G", "A5148C", "A5215C", "T5228C", "T5286C", "A5301G", "A5355G", "C5412T", "G5437C", "C5479A", "G5496A", "A5535C", "G5557A", "C5559T", "G5566A", "A5570C", "T5577C", "C5579A", "A5626G", "A5653G", "T5686G", "T5728G", "G5729A", "A5790G", "-5809G", "-5810G", "C5834T", "G5845A", "C5850T", "G5861A", "C5866T", "C5878T", "A5907G", "C5916A", "A5918G", "T5920C", "A5921T", "C5958A", "C6110G", "C6160T", "C6163T", "A6164G", "T6169C", "-6170T", "-6172C", "-6173A", "-6174T", "-6175C", "A6177G", "-6181A", "-6187T", "-6189C", "-6194A", "-6195G", "-6196C", "-6198C", "-6199T", "-6200A", "-6201G", "-6202C", "-6203G", "-6204A", "-6205G", "-6206C", "-6207T", "-6208A", "C6218G", "-6221G", "A6223G", "-6225C", "A6228G", "A6233C", "A6251G", "G6274A", "A6275C", "G6280A", "T6285A", "T6295G", "T6306C", "G6392A", "G6451A", "A6464C", "A6571G", "T6590A", "C6603G", "A6604C", "A6606G", "C6607G", "C6612A", "T6613A", "C6618G", "A6640G", "T6648C", "A6684G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6719A", "C6721A", "A6732G", "A6733T", "T6735A", "G6743A", "G6774A", "A6781T", "C6797A", "A6800G", "A6805G", "A6818G", "A6837C", "C6843A", "T6849A", "C6888A", "C6919T", "A6926G", "T6932A", "-6956T", "-6958T", "G6960A", "A6962G", "-6972C", "-6975A", "-6977T", "-6981G", "A6985C", "T6988A", "A6990T", "T6991C", "-6993A", "-6994T", "-6995T", "-6996A", "-6997A", "-7003T", "-7004G", "-7005G", "-7006C", "C7020A", "A7065G", "A7093G", "C7094A", "C7096A", "T7106A", "C7124T", "C7127A", "T7153C", "A7157G", "G7158A", "T7162A", "G7168A", "G7256A", "G7289A", "A7290C", "G7375A", "A7428G", "A7583C", "C7597T", "T7622A", "G7628A", "G7631A", "G7668A", "C7678G", "T7681A", "C7690T", "A7692C", "G7735C", "A7744G", "A7782G", "A7790G", "C7801A", "C7913T", "G7992A", "G8014A", "T8047C", "T8101A", "C8103T", "G8137A", "A8138C", "A8143G", "T8155C", "C8209T", "T8239C", "G8242A", "A8258C", "G8267T", "A8275G", "T8279G", "A8288T", "T8290C", "T8366A", "A8388G", "A8390T", "G8393A", "A8405G", "G8407A", "C8445A", "A8457C", "A8461G", "A8474T", "A8490G", "C8494A", "A8525G", "A8584T", "C8607T", "A8608T", "A8653C", "A8660G", "T8711C", "T8770A", "C8809A", "T8810G", "G8814C", "G8846A", "A8859G", "T8860C", "T8870C", "G8882A", "G8888A", "A8892G", "C8900T", "C8906A", "C8911G", "A8917G", "A8922G", "C8951T", "A8967G", "T8971C", "T9068C", "T9090C", "A9095G"], "INT": ["V32I", "S39C", "F100W", "L101I", "A124T", "D253E", "R269K", "D278G", "D286N"], "RT-p51": ["D40E", "I135T", "T200A", "I244V", "E248K", "D324E", "K357N", "T386I", "R390K", "E399K", "E413D", "V435A"], "RT-p66": ["D40E", "I135T", "T200A", "I244V", "E248K", "D324E", "K357N", "T386I", "R390K", "E399K", "E413D", "V435A", "R476K", "G490E"], "gp120": ["A3T", "K18R", "T22A", "T23S", "K34T", "T35K", "Q86E", "-111N", "-112T", "-115T", "-117E", "-118L", "-122E", "-123A", "-124A", "-125G", "K127Q", "I133V", "R141Q", "V144E", "L151P", "N161S", "V180I", "K204Q", "S246T", "T250S", "D251R", "A253E", "T255S", "Q277R", "S278G", "F289I", "D297N", "G307E", "E309D", "Q315K", "R316G", "N323D", "-326N", "N327T", "N328T", "T330-", "T332N", "T345K", "N358D", "K361E", "N368Y", "S369R", "S370N", "T371G", "-385T", "P389Q", "K404R", "L414I", "S418T", "L425I", "T432N", "N435D", "S436K", "V468I", "E479T"], "gp41": ["V24I", "N42S", "T94P", "S107T", "D109N", "D110N", "E119Q", "R122K", "D125E", "Q130T", "K144N", "N160S", "N163D", "N166K", "K172R", "A267V", "K279Q", "G293S", "I319L", "V322L", "C326G", "I329F"], "nef": ["S8R", "I16V", "R22K", "R39Q", "H40R", "T50A", "T51N", "Y81F", "H89F", "Q104P", "F143Y", "A156E", "E158Q", "I173A", "K184E", "R188Q", "A190G", "K192R", "I194V"], "p1": ["I5V", "N9H"], "p17": ["G62V", "K95R", "D102E", "A115V", "A119T", "G123K"], "p2": ["N9S", "V13A"], "p24": ["V86I", "M96I", "S120G"], "p6": ["Q28R", "D32E", "K33-"], "pro": ["I15V"], "rev": ["D7A", "A15V", "I19L", "F21S", "L22I", "G56S", "S67P", "C85S", "E97T", "R99G", "S103P", "G111E"], "tat": ["A21P", "R53S", "D62G", "A64T", "H65P", "P68H"], "vif": ["M8V", "K33R", "G37D", "F39V", "E45Q", "G60E", "R63K", "R93G", "E127R", "R132K", "N140S", "I188L"], "vpr": ["Y15S", "P37T", "I61T", "Q66R", "I84V"], "vpu": ["I7V", "T16A", "F27V", "C41D", "-68G", "P76L", "D80N"]}, "labels": {"aa": "INT: V32I, S39C, F100W, L101I, A124T, D253E, R269K, D278G, D286N; RT-p51: D40E, I135T, T200A, I244V, E248K, D324E, K357N, T386I, R390K, E399K, E413D, V435A; RT-p66: D40E, I135T, T200A, I244V, E248K, D324E, K357N, T386I, R390K, E399K, E413D, V435A, R476K, G490E; gp120: A3T, K18R, T22A, T23S, K34T, T35K, Q86E, -111N, -112T, -115T, -117E, -118L, -122E, -123A, -124A, -125G, K127Q, I133V, R141Q, V144E, L151P, N161S, V180I, K204Q, S246T, T250S, D251R, A253E, T255S, Q277R, S278G, F289I, D297N, G307E, E309D, Q315K, R316G, N323D, -326N, N327T, N328T, T330-, T332N, T345K, N358D, K361E, N368Y, S369R, S370N, T371G, -385T, P389Q, K404R, L414I, S418T, L425I, T432N, N435D, S436K, V468I, E479T; gp41: V24I, N42S, T94P, S107T, D109N, D110N, E119Q, R122K, D125E, Q130T, K144N, N160S, N163D, N166K, K172R, A267V, K279Q, G293S, I319L, V322L, C326G, I329F; nef: S8R, I16V, R22K, R39Q, H40R, T50A, T51N, Y81F, H89F, Q104P, F143Y, A156E, E158Q, I173A, K184E, R188Q, A190G, K192R, I194V; p1: I5V, N9H; p17: G62V, K95R, D102E, A115V, A119T, G123K; p2: N9S, V13A; p24: V86I, M96I, S120G; p6: Q28R, D32E, K33-; pro: I15V; rev: D7A, A15V, I19L, F21S, L22I, G56S, S67P, C85S, E97T, R99G, S103P, G111E; tat: A21P, R53S, D62G, A64T, H65P, P68H; vif: M8V, K33R, G37D, F39V, E45Q, G60E, R63K, R93G, E127R, R132K, N140S, I188L; vpr: Y15S, P37T, I61T, Q66R, I84V; vpu: I7V, T16A, F27V, C41D, -68G, P76L, D80N"}}}, {"name": "CRF21_A2D_NODE_0000001", "node_attrs": {"div": 0.07818, "clade_membership": {"value": "CRF21_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["A491G", "G696A", "C1960T", "A1988C", "T2080C", "A2395G", "G2972A", "G2980A", "G3010A", "T3172C", "G3173A", "C3415T", "A3522G", "A3535T", "G3859A", "C4569T", "A4937C", "A5036G", "A5213C", "G5561A", "A5720G", "A5787T", "C6183G", "A6276G", "G6323A", "T6325C", "A6489C", "A6647G", "A6683C", "G6725A", "G6821A", "A7231G", "A7373G", "A7796T", "C8080A", "A8180G", "A8193G", "A8271G", "A8458G", "T8740C", "A8746T"], "INT": ["A265V"], "RT-p51": ["V293I", "A360T"], "RT-p66": ["V293I", "A360T", "Q480H"], "gp120": ["K212T", "T265V", "A291T", "G322R"], "gp41": ["T165S", "F241L", "K297R", "Q323R"], "nef": ["I133T", "Y135F"], "p17": ["D121N"], "pro": ["L63P", "I64L"], "rev": ["V16I", "L78I"], "tat": ["S61G"], "vif": ["E117D"], "vpu": ["K38R"]}, "labels": {"aa": "INT: A265V; RT-p51: V293I, A360T; RT-p66: V293I, A360T, Q480H; gp120: K212T, T265V, A291T, G322R; gp41: T165S, F241L, K297R, Q323R; nef: I133T, Y135F; p17: D121N; pro: L63P, I64L; rev: V16I, L78I; tat: S61G; vif: E117D; vpu: K38R"}}, "children": [{"name": "AF457072", "node_attrs": {"div": 0.11139, "accession": "AF457072", "clade_membership": {"value": "CRF21_A2D"}, "country": {"value": "KE"}, "date": {"value": 1999.0}, "Strain_name": {"value": "KSM4001"}, "LANL_subtype": {"value": "CRF21_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["A418C", "G438A", "C456T", "T534G", "A537C", "C540A", "A548G", "C558T", "T560A", "A562G", "A581G", "T614G", "A627C", "G629A", "G644A", "A645T", "A647G", "C674A", "A677G", "G680A", "A706C", "G709A", "C719T", "C731T", "A806G", "T978C", "A1002G", "A1073G", "G1089A", "A1142G", "T1148C", "G1313A", "T1344C", "G1354C", "A1404G", "A1412G", "C1451T", "T1457A", "C1459-", "G1461A", "A1463G", "C1491T", "T1501C", "A1526G", "A1541C", "A1543G", "C1550T", "C1598T", "T1610C", "G1616T", "C1656A", "A1686G", "G1691A", "C1749T", "T1783C", "T1785A", "G1794A", "A1908G", "T1999C", "A2007G", "T2035C", "T2095C", "A2113G", "A2210G", "G2293A", "G2305A", "A2377C", "A2380G", "G2428A", "A2456C", "G2457A", "T2467C", "T2485C", "T2499G", "G2518A", "A2519G", "A2524G", "G2566A", "C2694T", "A2716G", "C2890T", "C2909G", "A2918C", "A3073C", "A3196G", "A3218G", "T3225C", "G3230T", "A3250G", "C3252T", "A3268G", "A3280G", "A3293G", "G3398A", "T3497C", "G3556A", "A3571G", "G3595A", "G3631A", "G3685A", "T3755G", "A3805G", "A3808G", "A3816G", "C3857A", "A3866G", "G3907A", "C3908A", "A3952C", "C3970T", "T3977C", "A3987G", "A4096G", "A4120G", "C4138T", "T4153C", "C4357T", "T4471C", "A4622G", "A4677G", "G4696C", "A4717T", "G4735A", "A4779G", "G4786A", "A4811G", "A4816G", "C4820A", "T4827C", "C4907T", "C4914T", "G4949A", "C5050A", "A5085G", "C5091T", "G5131A", "A5150C", "T5152C", "A5282C", "T5351-", "G5352-", "T5353-", "G5359T", "A5385C", "G5448A", "A5461C", "T5491A", "T5600C", "C5614T", "C5620G", "A5621G", "A5653T", "A5659T", "G5729A", "T5788G", "T5789A", "T5791G", "C5792A", "A5793G", "A5794G", "C5797T", "T5799G", "G5800T", "T5801C", "G5802A", "G5803A", "G5811-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818G", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5828C", "G5853A", "C5917T", "A5946G", "T5951A", "A5952T", "C5955A", "A5957G", "T5971C", "C6010T", "A6061C", "A6066G", "A6108C", "T6166A", "T6169A", "-6170T", "-6172C", "-6173A", "-6174A", "-6175G", "T6178C", "G6179A", "-6181T", "A6185-", "A6186-", "A6188-", "C6190-", "A6191-", "A6192-", "T6193-", "A6197-", "-6221C", "C6222T", "-6225G", "C6247T", "A6272G", "C6281A", "T6287A", "A6292T", "T6295C", "T6299A", "A6304C", "C6318T", "A6324G", "G6329A", "A6333G", "G6336C", "T6337C", "G6339A", "T6351G", "C6369T", "A6376C", "A6420T", "A6525G", "T6586C", "C6618T", "T6627C", "A6668T", "-6686A", "-6687G", "-6688T", "-6689A", "-6690C", "-6691A", "G6692C", "G6693A", "A6695C", "A6723T", "C6729T", "C6730A", "G6731-", "G6779C", "T6827C", "A6836C", "A6848G", "G6894C", "G6935A", "-6956G", "-6958G", "A6962C", "G6963A", "T6964A", "-6967T", "-6968A", "-6969A", "-6970T", "-6972G", "-6975C", "T6976A", "-6977G", "A6979G", "-6981C", "G6982A", "T6983G", "-6993C", "-6994A", "C7008T", "C7094T", "C7102T", "T7106G", "T7147G", "A7149T", "T7150A", "T7159G", "A7160T", "A7161C", "T7165C", "A7225G", "A7382G", "T7510C", "C7576T", "T7582C", "C7603T", "A7620G", "C7658G", "G7676A", "T7681G", "G7688A", "A7691C", "A7700G", "C7762T", "A7791G", "G7818A", "G7832A", "G7835A", "C7950T", "G7989A", "A7990C", "G7992A", "C8026A", "G8107A", "G8140A", "G8144A", "T8205C", "A8216G", "G8234A", "G8255A", "A8263C", "G8304T", "T8321G", "T8322C", "A8326G", "G8329A", "A8335T", "A8385G", "A8402G", "G8412A", "C8450T", "G8528A", "G8531T", "A8537C", "C8546T", "T8597G", "A8666T", "A8774G", "C8775T", "T8793G", "C8794G", "C8831T", "G8846A", "G8875A", "A8886C", "A8901T", "T8903C", "A8905G", "T8923C", "G9016A", "A9042G", "T9108C"], "INT": ["K14R", "L28I", "I31V", "L45I", "K71R", "L101I", "S283G"], "RT-p51": ["T39A", "S121H", "I135R", "I142V", "T200I", "P272A", "K275Q", "E291D", "I375V", "M377T", "A379S", "T386I", "T400A", "V435I"], "RT-p66": ["T39A", "S121H", "I135R", "I142V", "T200I", "P272A", "K275Q", "E291D", "I375V", "M377T", "A379S", "T386I", "T400A", "V435I", "S468P", "S554A"], "gp120": ["N21T", "K31R", "Y33I", "T35A", "K69N", "N71S", "D85A", "-105E", "-106F", "-107K", "T110-", "-115Q", "S116L", "-117G", "-118E", "-119D", "-120K", "-121M", "M126-", "K140E", "Q143K", "Y145N", "Y149N", "R150S", "P155L", "D157S", "D159S", "N160S", "I166R", "A172V", "Y189F", "K224R", "D251N", "T255I", "V258A", "N272Y", "I279T", "I281L", "Y290F", "G293-", "E309Q", "F325L", "N328Q", "K329T", "T332V", "S347T", "T360S", "N368E", "S370Q", "-372N", "-374T", "-375E", "-376S", "-377E", "N379D", "-381I", "L414F", "S418A", "T432I", "N435R"], "gp41": ["T27A", "K106R", "D125N", "G129S", "S133G", "N163S", "V177I", "V178I", "P216L", "R229H", "G281S", "I301T", "N305D", "V311I", "V318I", "E320D", "R334I", "F340A", "L344F"], "nef": ["T15A", "I20M", "D24N", "E63D", "E65D", "F85L", "E108D", "S151G", "R178K", "S187C", "I194T"], "p17": ["K28T", "V35I", "I46L", "S67A", "I68L", "Q69K", "K76R", "D93E", "K98Q", "I104L", "N124T", "S125N"], "p2": ["A12M", "V13-"], "p24": ["I91V", "G208A", "S225G"], "p6": ["S3G", "-23S", "P24S", "S25-", "L35P", "Y36N"], "p7": ["P9S", "I12T", "K26R"], "pro": ["N37S", "K70R"], "rev": ["L60I", "E87K", "G98R", "R99K"], "tat": ["K29Q", "T35P", "L39I", "P81S"], "vif": ["I31V", "G37A", "Y44F", "R50K", "I65V", "R67K", "K77R", "D78E", "L128I", "A155D", "R167G", "G182D", "M189T"], "vpr": ["N16H", "I60L", "V83I", "I84L", "R85-", "S94R"], "vpu": ["P3S", "Q5G", "T16S", "I18L", "C41Y", "E60D", "L61E", "S62E", "K63E", "V65S", "E66K", "-69V", "-70E", "-71V", "-72G", "H74P"]}, "labels": {"aa": "INT: K14R, L28I, I31V, L45I, K71R, L101I, S283G; RT-p51: T39A, S121H, I135R, I142V, T200I, P272A, K275Q, E291D, I375V, M377T, A379S, T386I, T400A, V435I; RT-p66: T39A, S121H, I135R, I142V, T200I, P272A, K275Q, E291D, I375V, M377T, A379S, T386I, T400A, V435I, S468P, S554A; gp120: N21T, K31R, Y33I, T35A, K69N, N71S, D85A, -105E, -106F, -107K, T110-, -115Q, S116L, -117G, -118E, -119D, -120K, -121M, M126-, K140E, Q143K, Y145N, Y149N, R150S, P155L, D157S, D159S, N160S, I166R, A172V, Y189F, K224R, D251N, T255I, V258A, N272Y, I279T, I281L, Y290F, G293-, E309Q, F325L, N328Q, K329T, T332V, S347T, T360S, N368E, S370Q, -372N, -374T, -375E, -376S, -377E, N379D, -381I, L414F, S418A, T432I, N435R; gp41: T27A, K106R, D125N, G129S, S133G, N163S, V177I, V178I, P216L, R229H, G281S, I301T, N305D, V311I, V318I, E320D, R334I, F340A, L344F; nef: T15A, I20M, D24N, E63D, E65D, F85L, E108D, S151G, R178K, S187C, I194T; p17: K28T, V35I, I46L, S67A, I68L, Q69K, K76R, D93E, K98Q, I104L, N124T, S125N; p2: A12M, V13-; p24: I91V, G208A, S225G; p6: S3G, -23S, P24S, S25-, L35P, Y36N; p7: P9S, I12T, K26R; pro: N37S, K70R; rev: L60I, E87K, G98R, R99K; tat: K29Q, T35P, L39I, P81S; vif: I31V, G37A, Y44F, R50K, I65V, R67K, K77R, D78E, L128I, A155D, R167G, G182D, M189T; vpr: N16H, I60L, V83I, I84L, R85-, S94R; vpu: P3S, Q5G, T16S, I18L, C41Y, E60D, L61E, S62E, K63E, V65S, E66K, -69V, -70E, -71V, -72G, H74P"}}}, {"name": "AF457051", "node_attrs": {"div": 0.10745, "accession": "AF457051", "clade_membership": {"value": "CRF21_A2D"}, "country": {"value": "KE"}, "date": {"value": 1999.0}, "Strain_name": {"value": "KER2003"}, "LANL_subtype": {"value": "CRF21_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["C380T", "A417C", "T422C", "C435T", "C471A", "A521G", "A604C", "G608A", "A685C", "A779C", "C788T", "C872T", "C879T", "A880C", "A891T", "T962C", "A965G", "T992G", "G1031A", "C1094T", "G1139A", "C1220T", "G1256A", "T1385C", "C1406T", "T1421G", "-1458A", "-1460A", "G1495A", "A1498G", "C1514T", "G1568A", "G1588A", "A1606G", "C1656T", "A1657C", "C1692T", "G1720T", "C1721G", "T1730C", "T1792C", "C1795T", "C1831T", "G1835A", "A1876G", "T2017C", "T2101A", "T2104C", "A2126C", "A2140G", "A2164G", "C2211T", "A2212G", "G2227A", "T2315C", "T2323C", "G2422A", "A2446G", "T2449C", "T2479C", "G2548A", "A2569G", "A2629G", "G2683A", "T2737G", "T2770A", "A2925G", "C2968A", "A3028G", "G3094A", "A3127G", "T3197C", "T3253C", "T3355C", "A3622G", "G3679A", "G3680A", "C3691T", "A3760G", "C3763T", "A3985G", "G4063A", "A4076T", "A4084G", "C4148G", "T4165C", "C4321T", "T4327C", "A4372G", "A4455T", "A4693G", "G4695A", "T4697G", "A4739G", "C4757T", "G4769A", "G4774C", "A4808G", "A4817G", "T4832G", "G4856A", "G4865A", "T4901C", "T4938A", "A4968C", "C5041T", "A5057G", "G5087A", "C5125T", "G5140A", "T5147C", "A5150G", "A5230G", "A5247C", "A5269C", "A5284G", "T5314C", "A5336C", "A5366G", "A5462G", "C5479A", "C5480T", "G5482A", "T5483A", "T5484G", "A5493G", "T5512C", "C5513G", "C5530A", "A5545C", "A5581G", "A5594G", "A5603G", "C5614G", "G5673A", "C5688T", "G5703A", "G5712A", "T5788A", "T5789G", "-5809G", "-5810G", "C5827T", "G5839A", "G5842A", "A5865G", "C5916A", "A5954T", "G5963A", "C5964A", "A5965G", "A6022G", "A6030G", "C6165A", "T6171-", "A6176C", "T6178A", "A6180T", "-6181G", "C6184G", "-6187C", "-6189G", "A6191G", "T6193A", "-6194G", "-6195G", "-6196G", "-6198G", "-6199T", "-6200A", "-6201C", "-6202C", "-6206C", "-6207A", "-6208A", "-6209A", "-6210A", "-6211C", "-6212A", "-6213T", "-6214T", "-6215A", "-6216A", "-6217C", "-6221A", "-6225T", "A6226G", "G6229T", "A6262G", "G6303A", "A6333C", "G6339C", "T6340C", "G6403A", "A6465G", "A6508G", "G6535A", "A6599C", "C6601T", "A6605G", "A6668G", "A6669G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6719C", "C6721T", "G6731A", "A6733G", "A6751G", "T6769C", "A6822G", "C6823A", "A6838C", "C6840A", "T6849C", "A6856T", "C6858A", "A6859C", "C6874T", "A6884G", "C6885T", "T6932A", "G6935C", "-6956A", "-6958C", "T6964C", "-6967A", "-6968T", "-6969G", "-6970G", "-6972A", "T6973C", "-6975G", "-6977A", "A6978C", "T6980G", "-6981A", "A6984C", "G6989A", "-6993G", "-7006C", "C7089A", "T7095A", "C7152A", "A7155C", "T7156A", "A7164T", "T7165G", "C7170T", "G7190A", "G7197A", "A7261T", "A7269G", "G7275A", "G7285A", "A7291T", "G7399A", "G7440T", "G7477A", "T7555G", "A7589G", "A7669G", "A7706C", "A7732C", "G7753A", "A7763C", "A7799C", "C7801A", "T7813C", "T7876C", "C7921T", "G8015C", "C8026G", "A8032T", "C8033A", "T8035C", "T8106G", "A8119G", "A8138G", "G8173A", "T8205A", "C8213T", "T8214A", "G8436C", "C8480T", "T8492C", "T8495G", "A8519G", "G8534T", "A8537G", "T8568A", "T8600C", "A8701T", "C8809A", "G8814A", "T8855A", "G8864T", "A8901C", "G8902C", "T8923G", "G8929A", "T8935A", "T8973G", "A8998-", "T9019G", "C9078T", "C9093-", "T9097C", "G9117A", "G9138-"], "INT": ["P125A", "Y227F"], "RT-p51": ["K11Q", "T39M", "I178M", "F214L", "K277R"], "RT-p66": ["K11Q", "T39M", "I178M", "F214L", "K277R", "E529K"], "gp120": ["D4G", "K34S", "A37K", "I56M", "E59G", "T104-", "-109D", "T110Q", "-111V", "-112R", "-115E", "-117T", "-118Q", "-119N", "-120I", "-121N", "-122Q", "-123T", "-124V", "-125D", "R150K", "D157N", "N160T", "N161T", "K204R", "I249L", "N272G", "S278G", "F289L", "G293K", "K294I", "N323R", "K334N", "P335H", "T344V", "K361Q", "-372W", "S373N", "-374S", "-375T", "-376E", "-377S", "T380S", "-385T", "A412E", "L414H", "T433-", "S436T", "N437S", "T439I", "D446N", "R448K", "K472R", "R474K", "E479D"], "gp41": ["R46M", "I84M", "N96D", "E119Q", "K126N", "Q130K", "I135L", "E143D", "K154Q", "N166Q", "K172R", "D230G", "V238L", "L244I", "V268G", "K279E", "I301N", "L304Y"], "nef": ["A32P", "E64D", "L76I", "Y120F", "A156D", "E158K", "I168M", "H171Q", "E174D", "S187P", "R188H", "I194R", "R196Q", "M198K"], "p1": ["N9S"], "p17": ["K28Q", "E90A", "K113N", "Q117P"], "p2": ["A12T"], "p24": ["Q50S", "T54S", "H87Q", "S120G"], "p6": ["P5S", "S14M", "L38S", "T39V", "S51L"], "p7": ["R10K", "K11R", "R41K", "K47R"], "pro": ["V13I"], "rev": ["S5R", "E10D", "G56A", "L60V", "T62Y", "Y63H", "S86R", "T91A", "E97G", "V109I"], "tat": ["K29R", "T35I", "V36K", "S46R", "I69V"], "vif": ["K36R", "G37R", "R63T", "Y110H", "S118T", "A152V", "T180I", "G185E", "I188M"], "vpr": ["Y15H", "N16D", "E48A", "I60M", "Q77H"], "vpu": ["P3A", "-68G", "H74Y", "D78N", "V79I"]}, "labels": {"aa": "INT: P125A, Y227F; RT-p51: K11Q, T39M, I178M, F214L, K277R; RT-p66: K11Q, T39M, I178M, F214L, K277R, E529K; gp120: D4G, K34S, A37K, I56M, E59G, T104-, -109D, T110Q, -111V, -112R, -115E, -117T, -118Q, -119N, -120I, -121N, -122Q, -123T, -124V, -125D, R150K, D157N, N160T, N161T, K204R, I249L, N272G, S278G, F289L, G293K, K294I, N323R, K334N, P335H, T344V, K361Q, -372W, S373N, -374S, -375T, -376E, -377S, T380S, -385T, A412E, L414H, T433-, S436T, N437S, T439I, D446N, R448K, K472R, R474K, E479D; gp41: R46M, I84M, N96D, E119Q, K126N, Q130K, I135L, E143D, K154Q, N166Q, K172R, D230G, V238L, L244I, V268G, K279E, I301N, L304Y; nef: A32P, E64D, L76I, Y120F, A156D, E158K, I168M, H171Q, E174D, S187P, R188H, I194R, R196Q, M198K; p1: N9S; p17: K28Q, E90A, K113N, Q117P; p2: A12T; p24: Q50S, T54S, H87Q, S120G; p6: P5S, S14M, L38S, T39V, S51L; p7: R10K, K11R, R41K, K47R; pro: V13I; rev: S5R, E10D, G56A, L60V, T62Y, Y63H, S86R, T91A, E97G, V109I; tat: K29R, T35I, V36K, S46R, I69V; vif: K36R, G37R, R63T, Y110H, S118T, A152V, T180I, G185E, I188M; vpr: Y15H, N16D, E48A, I60M, Q77H; vpu: P3A, -68G, H74Y, D78N, V79I"}}}]}]}, {"name": "NODE_0000009", "node_attrs": {"div": 0.044719999999999996, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A677G", "G690A", "C731T", "T978C", "A1002G", "C1094T", "C1229T", "C1292A", "C1331T", "A1397G", "C1406T", "-1458G", "T1502C", "G1664A", "A2140G", "G2293A", "A2925G", "T3170G", "A3205G", "A3238G", "A3280G", "C3449T", "A3487G", "C3499T", "G3508C", "C3542A", "C3756A", "A3814G", "G3825A", "T3856C", "A3868G", "G3916A", "C4042T", "A4057G", "A4078C", "T4177C", "A4183G", "T4543C", "G4766A", "A4778G", "C4820A", "C4911A", "C4943T", "A4988T", "C5019T", "C5214T", "C5251T", "G6224-", "C6318A", "G6336C", "G6346A", "A6599C", "A6818G", "T6895C", "C7096A", "T7099C", "G7765A", "A7791G", "C8293T", "T8302C", "A8306C", "G8348T", "G8354A", "G8516A", "G8528A", "T8636A", "G8666T", "A8701T", "T8847A", "A8852G", "C8904A", "C8906A", "G8915T", "A8924G", "C9075T"], "INT": ["S17N"], "RT-p51": ["K277R", "M377Q"], "RT-p66": ["K277R", "M377Q", "E471D", "H483N"], "gp120": ["D4E", "-105D", "I153V", "P155Q", "N161T", "I249L", "K329T"], "gp41": ["N163S", "D230G", "D232G", "F340L"], "nef": ["D98E", "E108D", "I168M", "K182V", "L191F"], "p17": ["A119T"], "p24": ["I15L", "I91V", "E180D"], "vif": ["D78E", "L109M", "E134D"], "vpr": ["P37I"]}, "labels": {"aa": "INT: S17N; RT-p51: K277R, M377Q; RT-p66: K277R, M377Q, E471D, H483N; gp120: D4E, -105D, I153V, P155Q, N161T, I249L, K329T; gp41: N163S, D230G, D232G, F340L; nef: D98E, E108D, I168M, K182V, L191F; p17: A119T; p24: I15L, I91V, E180D; vif: D78E, L109M, E134D; vpr: P37I"}}, "children": [{"name": "results/subtype_trees/CRF10_CD.nwk", "node_attrs": {"div": 0.09175, "clade_membership": {"value": "CRF10_CD"}}, "branch_attrs": {"mutations": {"nuc": ["A147-", "G148-", "A149-", "C150-", "C151-", "A152-", "C153-", "T154-", "T155-", "T156-", "A157-", "G158-", "T159-", "C160-", "A161-", "G162-", "T163-", "G164-", "T165-", "G166-", "A168-", "A169-", "A170-", "A171-", "T172-", "C173-", "C287A", "T288C", "C379A", "C435T", "G455A", "A554G", "C558A", "G612A", "A619C", "A661C", "C747T", "G771C", "A774T", "A797G", "A815G", "A887G", "G944A", "T992G", "G1016A", "G1019A", "G1077A", "A1115G", "G1139A", "A1142G", "C1220T", "A1265G", "G1354C", "A1450G", "T1452G", "C1453G", "G1455A", "C1456A", "C1460T", "G1495A", "A1496G", "C1556T", "G1661A", "T1679C", "C1745A", "A1781G", "T1790C", "G1942A", "C1986T", "C2003T", "C2047T", "T2116G", "T2195C", "C2356T", "A2374G", "C2393T", "G2456T", "T2467C", "A2470G", "G2518A", "G2548A", "G2602A", "C2605T", "A2629G", "C2694T", "A2713G", "A2715G", "T2719C", "G2725A", "G2727A", "A2755G", "T2779G", "T2788G", "T2806C", "A2828C", "A2830G", "A2842G", "A2845T", "A2884G", "T2890C", "C2899T", "T2908C", "A2923G", "T2930C", "A2932G", "C2960T", "G2969A", "C3002T", "A3061G", "A3076T", "A3091G", "A3097G", "T3131C", "T3132A", "T3133C", "G3169A", "G3170A", "A3224C", "C3225A", "C3232T", "T3303C", "G3307C", "G3316A", "C3346T", "T3358C", "A3367G", "T3380C", "A3382G", "G3494A", "C3508T", "A3538C", "T3567C", "C3577T", "T3589C", "A3607C", "C3610T", "G3694A", "G3718A", "C3751A", "A3756G", "A3775G", "T3779C", "G3796A", "A3808G", "T3820C", "A3913G", "A3923T", "A4069C", "A4081G", "T4144C", "A4219G", "T4234C", "C4321T", "T4412C", "C4428T", "G4459A", "T4471C", "A4474T", "A4492C", "T4537C", "A4561G", "A4564G", "C4569T", "G4573A", "G4581A", "T4585C", "A4608C", "T4640C", "C4652T", "A4664G", "T4670C", "A4684G", "A4694G", "C4715T", "G4779A", "G4856A", "A4858T", "C4871T", "T4932G", "G4975C", "G4986A", "A5007C", "A5039T", "T5062C", "G5066A", "A5093G", "T5102C", "A5122G", "A5159G", "T5170C", "A5215T", "C5221T", "G5226A", "T5228C", "G5257A", "G5267A", "T5293C", "G5296T", "A5305G", "T5314C", "A5336G", "A5343C", "T5357G", "T5382G", "T5415C", "T5424C", "G5432A", "G5433A", "C5445T", "A5461G", "A5462C", "G5463A", "T5467A", "C5478T", "A5480T", "C5490T", "T5491C", "T5492A", "A5493G", "G5496A", "C5511T", "A5547C", "C5548G", "A5555C", "G5557A", "C5563G", "C5567A", "G5575A", "C5579T", "C5584T", "C5602A", "C5611T", "A5612T", "C5614A", "C5615A", "-5620A", "G5622A", "T5624G", "C5630G", "A5632G", "T5636G", "G5644A", "A5658C", "T5687A", "C5688T", "A5706G", "A5707G", "A5708T", "G5712A", "A5718G", "T5736C", "G5737A", "T5739A", "A5745T", "A5748G", "G5781T", "A5787T", "T5788A", "T5789C", "T5791G", "C5792A", "C5795A", "C5797T", "T5801C", "G5802C", "G5803A", "A5805C", "G5811-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817T", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5828T", "G5830A", "C5831G", "T5832G", "C5834T", "G5837T", "G5845A", "C5850T", "C5851T", "G5856A", "T5860G", "G5861A", "A5863G", "A5866G", "T5884A", "G5912A", "A5957G", "T5992C", "A6024T", "C6026T", "C6046T", "C6052T", "A6065G", "A6066G", "A6076T", "A6113G", "C6165G", "-6172T", "-6180C", "-6181C", "-6187C", "-6189A", "A6192C", "-6194G", "-6196T", "-6198G", "-6207G", "-6208A", "-6209A", "-6210T", "-6211G", "A6219-", "G6227-", "A6228-", "A6229-", "A6230-", "T6231-", "G6232-", "T6285A", "G6303A", "A6313G", "A6326G", "A6327G", "A6330G", "T6337C", "T6340C", "T6382A", "T6395A", "T6436A", "G6451A", "A6475G", "A6478G", "C6481A", "T6493C", "C6499T", "A6508G", "A6520G", "G6532A", "C6548T", "G6550A", "A6605G", "C6607T", "C6619T", "A6640G", "A6648C", "T6658C", "A6661G", "G6664A", "C6673T", "-6689A", "C6692A", "T6694G", "G6712A", "G6716A", "A6732G", "G6743A", "C6758T", "T6766C", "G6776A", "G6838A", "A6865G", "G6894C", "G6935A", "-6971A", "-6972G", "-6973T", "-6974A", "-6975C", "-6979A", "-6980G", "-6981G", "-6982G", "-6983G", "-6984T", "-6985A", "A6989G", "-6993G", "-6994T", "G7072A", "A7089C", "G7123A", "C7127T", "A7129G", "-7160C", "-7162G", "T7222C", "G7239A", "A7255T", "G7256C", "A7315G", "A7322G", "G7357A", "A7372G", "A7373C", "A7525C", "T7609C", "T7630G", "A7669G", "C7690T", "A7742C", "T7748C", "G7754C", "C7762T", "G7846A", "C7906T", "A7918G", "A8032G", "T8047C", "G8105A", "G8173A", "G8181T", "G8191A", "A8216G", "G8219A", "T8256C", "G8264A", "T8279G", "G8280T", "A8288G", "G8304C", "T8387G", "A8388G", "A8432G", "T8440C", "A8447G", "G8453A", "C8460T", "T8483C", "A8490C", "C8491A", "T8492G", "G8531A", "A8564T", "C8585T", "T8594A", "T8597C", "C8607T", "A8608T", "C8651T", "A8656G", "A8660G", "T8666C", "C8676T", "C8688A", "G8717A", "C8741T", "T8789C", "A8794G", "G8798A", "A8801G", "C8812A", "T8835C", "T8843C", "A8851T", "C8867T", "G8870A", "G8871C", "G8873C", "A8874G", "G8882A", "G8905A", "T8915C", "A8930C", "G8936A", "T8947A", "C8948T", "G8970-", "T8972-", "T8973-", "C8975-", "T8976-", "A8977-", "C8978-", "A8979-", "C9017T", "G9033-", "T9071C", "T9097G", "G9132T"], "INT": ["M50L", "T218I", "A265V", "R269K", "D278A"], "RT-p51": ["I178M", "T200I", "E207G", "R211K", "V292I", "F346H", "S359T", "E404D"], "RT-p66": ["I178M", "T200I", "E207G", "R211K", "V292I", "F346H", "S359T", "M403T", "E404D", "L469I"], "gp120": ["S1N", "A3T", "N5K", "A20T", "E57V", "N71G", "E74D", "T104S", "-106I", "-111N", "-112N", "E125-", "M126-", "V144E", "R150K", "N158G", "N159S", "S181T", "H280R", "A288T", "D297N", "A308T", "N323D", "S347T", "T366-", "N368-", "N369-", "S370-", "T371-", "-377S", "-379N", "-382G", "-385T", "M406I", "R462K", "V468L"], "gp41": ["R74S", "A268T", "L282I", "N305D", "A306T", "V321I", "C326V", "R334T"], "nef": ["V33A", "T50Q", "K105R", "H116N", "Y120F", "F143Y", "K151R", "T157N", "C169S", "Q170L", "E177H", "R178G", "R188K", "F191H", "F202Y"], "p17": ["A15E", "L75I", "E93K", "N109T"], "p2": ["S10G", "A11N"], "p24": ["A14P", "G208A"], "p6": ["T39A"], "p7": ["R10K"], "pro": ["H69Y"], "rev": ["D11A", "K14Q", "L18I", "S67P", "S86N", "V109I"], "tat": ["D2E", "R19K", "K29A", "C31S", "Q35L", "L39Q", "R57S", "P58A", "Q60P", "Q63E", "A64D", "D67N", "P68L", "P70S"], "vif": ["M8L", "K33R", "V65I", "Q91L", "Y110H", "S116A", "H127Q", "S130T", "D134N", "K141Q", "K179R"], "vpr": ["T19A", "S41N", "A55T", "S93A"], "vpu": ["Q2-", "P3-", "V5-", "I6-", "L7-", "I9-", "V13I", "F27Y", "K34V", "D44K", "E58D", "E60D", "L61T", "S62E", "V65S", "E66T", "-69V", "-70D", "-71M", "-72G", "H74L", "A75R", "W77L", "D80N"]}, "labels": {"aa": "INT: M50L, T218I, A265V, R269K, D278A; RT-p51: I178M, T200I, E207G, R211K, V292I, F346H, S359T, E404D; RT-p66: I178M, T200I, E207G, R211K, V292I, F346H, S359T, M403T, E404D, L469I; gp120: S1N, A3T, N5K, A20T, E57V, N71G, E74D, T104S, -106I, -111N, -112N, E125-, M126-, V144E, R150K, N158G, N159S, S181T, H280R, A288T, D297N, A308T, N323D, S347T, T366-, N368-, N369-, S370-, T371-, -377S, -379N, -382G, -385T, M406I, R462K, V468L; gp41: R74S, A268T, L282I, N305D, A306T, V321I, C326V, R334T; nef: V33A, T50Q, K105R, H116N, Y120F, F143Y, K151R, T157N, C169S, Q170L, E177H, R178G, R188K, F191H, F202Y; p17: A15E, L75I, E93K, N109T; p2: S10G, A11N; p24: A14P, G208A; p6: T39A; p7: R10K; pro: H69Y; rev: D11A, K14Q, L18I, S67P, S86N, V109I; tat: D2E, R19K, K29A, C31S, Q35L, L39Q, R57S, P58A, Q60P, Q63E, A64D, D67N, P68L, P70S; vif: M8L, K33R, V65I, Q91L, Y110H, S116A, H127Q, S130T, D134N, K141Q, K179R; vpr: T19A, S41N, A55T, S93A; vpu: Q2-, P3-, V5-, I6-, L7-, I9-, V13I, F27Y, K34V, D44K, E58D, E60D, L61T, S62E, V65S, E66T, -69V, -70D, -71M, -72G, H74L, A75R, W77L, D80N", "clade": "CRF10_CD"}}, "children": [{"name": "AF289548", "node_attrs": {"div": 0.12583, "accession": "AF289548", "clade_membership": {"value": "CRF10_CD"}, "country": {"value": "TZ"}, "date": {"value": 1996.0}, "Strain_name": {"value": "96TZ_BF061"}, "LANL_subtype": {"value": "CRF10_CD"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T396C", "A417C", "G424A", "A455G", "A461C", "C471A", "A618G", "C746T", "T777A", "A810G", "C827T", "A944G", "G989A", "G1115A", "C1136A", "G1184A", "A1193G", "A1289C", "G1424A", "A1442G", "A1449G", "G1458A", "T1501G", "T1537C", "A1564G", "A1567G", "A1602C", "A1614C", "T1616A", "C1656A", "C1706T", "T1783C", "T1785C", "G1835A", "C1865T", "A1939G", "C1987T", "C1996A", "T2047C", "A2056G", "G2140A", "A2170G", "A2182G", "C2211A", "A2239G", "A2242G", "C2263T", "T2369C", "G2374A", "T2393C", "A2566G", "A2602G", "T2608C", "G2624C", "C2644T", "G2675C", "G2686C", "G2691C", "T2708C", "A2741G", "A2767G", "C2806T", "G2816T", "G2837A", "G2843A", "C2848T", "C2958T", "A2989G", "G3010A", "T3184C", "T3197C", "A3202C", "A3230T", "A3259G", "G3264A", "C3294T", "A3304G", "G3334T", "T3412C", "T3445A", "A3489G", "T3492C", "C3500A", "A3625C", "G3685A", "T3695C", "A3739G", "T3757G", "G3766A", "T3946C", "A3985G", "C4072T", "T4075C", "T4247C", "T4288G", "A4470G", "C4534A", "C4670T", "G4694T", "T4702C", "A4775T", "G4782A", "T4793C", "A4838G", "G4861A", "G4878A", "A4968G", "C5006A", "G5093A", "C5102T", "G5159A", "G5187A", "A5335C", "G5336C", "A5355G", "G5382A", "G5389C", "G5448A", "T5451C", "T5452C", "G5500A", "A5615G", "A5620C", "G5624A", "G5629C", "C5678T", "T5681G", "G5692C", "G5706A", "A5710G", "G5711A", "A5714C", "A5715T", "G5717C", "A5764C", "A5770C", "G5775C", "T5781C", "G5791-", "A5792G", "A5795G", "T5797A", "C5801T", "A5803G", "T5807A", "G5808T", "-5811G", "C5824A", "G5860A", "C5862G", "A5950C", "T5953C", "C5998T", "A6015G", "G6128A", "G6165A", "A6168G", "T6169C", "-6170A", "C6187T", "A6188G", "-6195T", "A6197G", "-6199T", "-6200G", "-6201A", "-6202C", "-6203C", "-6204C", "-6205C", "-6206A", "-6212A", "-6213C", "-6214A", "A6233-", "A6234-", "A6235-", "T6252C", "A6263G", "G6267A", "A6324G", "G6327A", "C6412T", "G6442A", "C6446A", "A6462G", "G6475A", "G6494A", "G6526A", "C6618A", "A6628G", "A6659G", "C6660T", "A6684G", "G6732A", "A6733C", "T6745C", "G6762A", "G6802A", "C6827T", "A6836C", "A6837G", "A6839C", "G6865A", "A6913G", "A6935G", "-6952A", "-6956A", "-6957C", "-6958A", "A6959T", "-6960C", "T6961A", "-6963A", "C6966A", "-6967T", "-6968A", "-6969C", "-6970A", "A6990G", "T6991G", "A7032G", "C7045T", "A7096G", "C7102T", "T7127G", "A7198G", "C7250A", "A7269C", "A7366G", "G7399A", "T7400G", "A7420G", "G7423A", "A7522G", "T7561A", "A7572G", "A7629G", "G7633A", "A7640G", "T7691C", "A7693C", "G7701A", "G7777A", "A7782G", "T7866G", "T7921G", "G7924C", "C7988A", "A7989G", "A8018G", "C8028T", "A8029G", "G8030A", "G8133T", "A8143G", "C8147A", "G8170A", "C8223T", "C8232A", "A8241G", "G8242C", "G8243T", "C8256T", "T8281C", "G8288A", "C8302T", "A8326G", "G8385C", "C8386A", "A8402G", "G8412A", "A8413G", "A8426G", "G8429A", "G8432A", "A8441G", "G8446A", "G8447A", "C8451T", "A8455C", "A8456T", "A8461T", "A8468C", "A8469C", "C8471G", "T8477C", "G8487C", "A8489G", "C8490G", "A8491G", "G8492C", "C8494A", "C8499G", "C8504T", "A8516G", "A8522G", "A8528G", "G8534A", "A8537G", "T8567C", "A8584T", "A8604G", "A8636T", "G8656A", "C8661A", "C8687T", "G8732A", "T8740C", "T8741C", "A8750G", "C8768T", "C8775T", "G8795A", "G8814A", "A8829T", "C8868A", "C8869A", "C8873T", "A8886G", "A8905C", "A8906C", "T8914A", "G8924A", "C8957T", "G8997-", "G9006A", "C9012A", "G9024A", "G9026A", "T9115C", "A9135G", "T9149C"], "INT": ["H171Q", "D232G", "D253E"], "RT-p51": ["T39K", "D40E", "D121Y", "E177Q", "E194Q", "Q197H", "R199T", "T216A", "V241L", "E248K", "E250N", "A288V", "M357R", "S379C", "R390K", "T400I", "E413D"], "RT-p66": ["T39K", "D40E", "D121Y", "E177Q", "E194Q", "Q197H", "R199T", "T216A", "V241L", "E248K", "E250N", "A288V", "M357R", "S379C", "R390K", "T400I", "E413D", "K465R", "V466A", "V467I", "S534P", "S554R"], "gp120": ["T3R", "T35A", "Q54R", "S87G", "V92I", "S104N", "D105G", "-109A", "N112D", "N113T", "-114V", "-115G", "-116D", "-117P", "-118R", "-119M", "-120T", "K127-", "I133T", "I137V", "R138K", "D157G", "G158D", "L198I", "K203R", "V214I", "T255N", "T269V", "K277R", "G293D", "D294I", "H302Y", "C303Y", "N328R", "T329P", "K361E", "-366T", "-368T", "S373-", "-381S", "-383S", "K393R", "L425V", "N437Q", "L466I", "K472T"], "gp41": ["M7V", "L33V", "K90R", "D109G", "N113D", "S133N", "T140I", "K147Q", "E151Q", "N160S", "F188C", "F206L", "Q207H", "Q229R", "N239D", "S242L", "A243T", "R277M", "T307I", "A310E", "E313G", "G314W", "V329I"], "nef": ["A15Q", "I16V", "I20M", "D24S", "R35Q", "E38A", "H40F", "I43L", "A49P", "Q50G", "T51N", "P53A", "Y81F", "S88G", "H89F", "E98D", "R105K", "Q107K", "I133T", "Y143F", "E158K", "P176K", "K188T"], "p17": ["K28Q", "R30K", "E42D", "L46I", "K95A"], "p2": ["N9G", "A12T"], "p24": ["S16T", "I27V", "H87Q", "M96I", "G116R"], "p6": ["L35P", "Y36H"], "p7": ["I12S", "I24T", "K33R", "K34R", "M46L", "T50P"], "pro": ["V13I", "I47M"], "rev": ["A47E", "E57G", "S61D", "T62A", "Q95H", "S99G", "P100H", "A108T"], "tat": ["D5H", "Y26H", "G42S"], "vif": ["K36N", "F39S", "R63S", "V66I", "R92K", "V98I", "I128V", "N140K"], "vpr": ["A19T", "S28N", "Q77P", "I84V", "A93T", "R95T"], "vpu": ["-2L", "-3S", "-5L", "-9R", "T24I", "I25R", "E29Q", "R35E", "Q36P", "R37T", "S53R", "N55H", "E56D", "E62-", "H73N", "P76L"]}, "labels": {"aa": "INT: H171Q, D232G, D253E; RT-p51: T39K, D40E, D121Y, E177Q, E194Q, Q197H, R199T, T216A, V241L, E248K, E250N, A288V, M357R, S379C, R390K, T400I, E413D; RT-p66: T39K, D40E, D121Y, E177Q, E194Q, Q197H, R199T, T216A, V241L, E248K, E250N, A288V, M357R, S379C, R390K, T400I, E413D, K465R, V466A, V467I, S534P, S554R; gp120: T3R, T35A, Q54R, S87G, V92I, S104N, D105G, -109A, N112D, N113T, -114V, -115G, -116D, -117P, -118R, -119M, -120T, K127-, I133T, I137V, R138K, D157G, G158D, L198I, K203R, V214I, T255N, T269V, K277R, G293D, D294I, H302Y, C303Y, N328R, T329P, K361E, -366T, -368T, S373-, -381S, -383S, K393R, L425V, N437Q, L466I, K472T; gp41: M7V, L33V, K90R, D109G, N113D, S133N, T140I, K147Q, E151Q, N160S, F188C, F206L, Q207H, Q229R, N239D, S242L, A243T, R277M, T307I, A310E, E313G, G314W, V329I; nef: A15Q, I16V, I20M, D24S, R35Q, E38A, H40F, I43L, A49P, Q50G, T51N, P53A, Y81F, S88G, H89F, E98D, R105K, Q107K, I133T, Y143F, E158K, P176K, K188T; p17: K28Q, R30K, E42D, L46I, K95A; p2: N9G, A12T; p24: S16T, I27V, H87Q, M96I, G116R; p6: L35P, Y36H; p7: I12S, I24T, K33R, K34R, M46L, T50P; pro: V13I, I47M; rev: A47E, E57G, S61D, T62A, Q95H, S99G, P100H, A108T; tat: D5H, Y26H, G42S; vif: K36N, F39S, R63S, V66I, R92K, V98I, I128V, N140K; vpr: A19T, S28N, Q77P, I84V, A93T, R95T; vpu: -2L, -3S, -5L, -9R, T24I, I25R, E29Q, R35E, Q36P, R37T, S53R, N55H, E56D, E62-, H73N, P76L"}}}, {"name": "CRF10_CD_NODE_0000001", "node_attrs": {"div": 0.09245, "clade_membership": {"value": "CRF10_CD"}}, "branch_attrs": {"mutations": {"nuc": ["T1421G", "T2386A", "G5437C", "G5800T", "A5804C", "C8652A", "T8770A"], "gp120": ["F325L", "W367-", "T387I"], "gp41": ["V318A"], "nef": ["Q104K", "C163S", "I194M"], "tat": ["A21P"], "vpu": ["L4-", "A8-", "V10-"]}, "labels": {"aa": "gp120: F325L, W367-, T387I; gp41: V318A; nef: Q104K, C163S, I194M; tat: A21P; vpu: L4-, A8-, V10-"}}, "children": [{"name": "AF289550", "node_attrs": {"div": 0.12582, "accession": "AF289550", "clade_membership": {"value": "CRF10_CD"}, "country": {"value": "TZ"}, "date": {"value": 1996.0}, "Strain_name": {"value": "96TZ_BF110"}, "LANL_subtype": {"value": "CRF10_CD"}}, "branch_attrs": {"mutations": {"nuc": ["A227C", "A301G", "A311G", "T392C", "C393A", "G395A", "T485G", "G534T", "A548G", "A674G", "G677A", "G683A", "A690G", "T731C", "G752A", "G770A", "G818A", "A836G", "T852A", "G908A", "C926A", "C947A", "T988C", "G1002A", "T1040C", "G1078C", "A1131G", "G1142A", "G1265A", "G1313A", "G1356A", "A1359T", "T1501A", "G1532A", "A1543G", "A1545C", "A1578G", "T1628C", "A1642G", "C1656A", "G1733A", "G1736A", "A1740-", "T1741-", "A1742-", "A1743-", "C1744-", "A1745-", "G1781A", "C1809G", "G1858A", "T1868C", "A1942G", "T2041C", "T2206C", "A2215T", "T2356C", "G2392T", "G2428A", "C2464T", "C2467T", "G2470A", "T2520C", "C2671T", "G2715A", "C2720T", "G2779A", "C2822T", "T2885C", "C2908T", "A2919G", "A2998G", "G3016A", "A3031G", "A3064G", "A3079G", "A3082T", "G3165T", "C3207T", "G3211A", "A3283T", "T3399C", "A3494G", "T3497C", "T3508A", "C3538A", "T3544G", "C3545T", "G3553A", "A3565G", "G3664A", "A3674C", "G3679A", "A3684G", "A3694G", "C3712T", "T3742C", "G3756A", "A3772G", "A3796G", "G3814A", "C3820T", "G3913A", "C3922A", "A4012G", "G4057A", "C4078T", "T4085C", "C4159T", "A4243G", "A4270G", "T4321C", "C4396T", "C4534T", "C4543A", "T4656C", "T4679G", "A4693G", "T4702A", "A4736G", "A4751G", "A4760G", "A4779G", "T4805C", "A4806C", "G4816A", "T4840C", "C4898T", "T4959G", "T5073C", "G5140A", "C5149T", "T5205A", "A5282C", "A5302C", "G5305A", "T5333C", "G5363A", "C5397A", "C5412T", "A5444C", "A5446G", "G5461C", "C5462A", "A5463T", "T5466C", "C5495A", "T5562C", "A5575G", "A5602G", "T5621C", "G5647A", "G5668A", "G5718A", "T5799G", "C5802A", "T5851C", "C5859T", "A5865G", "G5869A", "G5872A", "C5878A", "C5924T", "C5949G", "G5957A", "C5964T", "C6116T", "A6157G", "T6169A", "-6170T", "T6171G", "T6172G", "C6181G", "A6188C", "C6190T", "A6191G", "C6192A", "T6193G", "-6195G", "A6209C", "-6212T", "-6213C", "-6214A", "-6215A", "-6216T", "-6217G", "-6218A", "-6219A", "-6220C", "-6221A", "-6222A", "-6223T", "-6224G", "-6225T", "-6226C", "-6227G", "-6228G", "-6229A", "-6230A", "-6231T", "-6232G", "G6277A", "A6303G", "C6305T", "T6306C", "A6320T", "G6330A", "A6333C", "A6346G", "C6369T", "G6379A", "A6382G", "G6391A", "A6484C", "C6487T", "T6511C", "A6525G", "A6544G", "A6595G", "G6631T", "T6735A", "A6742C", "A6751G", "A6764G", "C6766A", "G6771A", "A6775G", "A6811C", "G6821A", "C6823A", "A6848C", "T6849A", "A6854C", "A6855G", "G6871A", "A6880G", "A6887G", "C6888A", "C6892T", "T6949C", "A6950-", "C6951-", "T6953-", "G6954-", "G6955-", "A6959-", "T6961-", "A6962-", "T6964-", "A6965-", "C6966-", "C6975T", "-6976A", "-6977G", "-6978A", "A6979G", "G6980A", "G6981T", "G6982A", "G6983T", "T6984C", "G6989A", "A6990C", "T6991A", "-6995A", "-6996T", "-6997A", "-6998G", "-6999G", "-7000T", "-7001A", "-7002A", "-7003T", "-7004A", "-7005C", "-7006A", "C7008T", "C7014A", "G7026A", "C7094T", "G7132A", "A7152G", "A7157C", "G7158A", "T7159G", "C7160A", "A7161G", "G7162T", "A7163G", "A7164G", "T7165G", "C7170T", "C7222T", "A7239G", "A7240G", "C7373T", "A7396G", "C7463A", "A7589G", "A7590C", "C7597T", "G7668A", "T7722C", "C7748T", "C7801A", "A7846G", "G7873A", "T7880G", "T7884C", "T7921C", "C7931T", "C8026A", "G8032A", "C8047T", "T8112C", "C8146A", "C8147A", "T8164C", "C8171A", "G8216A", "C8232T", "G8245A", "C8320T", "G8323A", "G8329A", "A8370T", "A8372C", "G8373T", "T8374G", "T8401C", "A8405G", "A8408G", "T8460C", "C8480T", "G8487A", "C8488T", "A8518C", "T8595C", "T8607C", "T8608A", "T8651C", "A8780G", "A8819G", "G8864A", "C8871G", "G8874A", "T8887A", "C8903T", "A8904C", "A8906G", "C8913T", "T8993-", "G9006C", "G9007T", "A9009G", "C9108T"], "INT": ["D256E"], "RT-p51": ["D121Y", "I142T", "G207E", "P243S", "E250D", "K275R", "A371V", "E396D", "V435A"], "RT-p66": ["D121Y", "I142T", "G207E", "P243S", "E250D", "K275R", "A371V", "E396D", "V435A", "S468P", "I469L", "D471E", "N483K", "K527Q", "K530R", "S554N"], "gp120": ["A2V", "E4G", "A32G", "A37V", "S87G", "N113V", "-114G", "-115M", "K150R", "L151S", "I156L", "S159N", "N160T", "A172V", "K224R", "Q259H", "D294N", "H302Y", "N304E", "S306N", "K319N", "D323K", "N328K", "I332H", "K334R", "T345E", "-374I", "-375E", "-376I", "N379T", "T380S", "-381I", "-383N", "-384T", "T385S", "R391K", "A432N", "N433S", "N435Q", "N437G", "T439I", "K462R"], "gp41": ["M7V", "L54M", "N96A", "D109E", "R122K", "K147Q", "E151Q", "N166K", "L193V", "V194A", "L210F", "F241L", "I270T", "Q290K", "D305N", "A310V"], "nef": ["I10F", "V11C", "I16V", "I20T", "A49I", "E59A", "E64D", "F85L", "H177D", "G178R", "V182K", "K188Q", "H191F"], "p1": ["K4R"], "p17": ["A67S", "K95T", "T119A"], "p2": ["N9S"], "p24": ["S41T", "V86A", "H87Q", "V91I", "M96I", "G116T", "I134V", "A209T", "T210S"], "p6": ["I21-", "T22-", "L44V"], "p7": ["I12N", "K26R", "N27H", "K38E"], "pro": ["T4S"], "rev": ["V16A", "P28L", "L60I", "P67S", "P100N", "S106P", "A108E"], "tat": ["N7K", "N23T", "K24E", "A29H", "T40K", "N67D"], "vif": ["K36R", "F39Y", "I65V", "T74P", "R77K", "V85A", "L125V", "G185E", "T188I"], "vpr": ["F34Y", "I60L", "Q66H", "I84M"], "vpu": ["V14I", "V21I", "P76L"]}, "labels": {"aa": "INT: D256E; RT-p51: D121Y, I142T, G207E, P243S, E250D, K275R, A371V, E396D, V435A; RT-p66: D121Y, I142T, G207E, P243S, E250D, K275R, A371V, E396D, V435A, S468P, I469L, D471E, N483K, K527Q, K530R, S554N; gp120: A2V, E4G, A32G, A37V, S87G, N113V, -114G, -115M, K150R, L151S, I156L, S159N, N160T, A172V, K224R, Q259H, D294N, H302Y, N304E, S306N, K319N, D323K, N328K, I332H, K334R, T345E, -374I, -375E, -376I, N379T, T380S, -381I, -383N, -384T, T385S, R391K, A432N, N433S, N435Q, N437G, T439I, K462R; gp41: M7V, L54M, N96A, D109E, R122K, K147Q, E151Q, N166K, L193V, V194A, L210F, F241L, I270T, Q290K, D305N, A310V; nef: I10F, V11C, I16V, I20T, A49I, E59A, E64D, F85L, H177D, G178R, V182K, K188Q, H191F; p1: K4R; p17: A67S, K95T, T119A; p2: N9S; p24: S41T, V86A, H87Q, V91I, M96I, G116T, I134V, A209T, T210S; p6: I21-, T22-, L44V; p7: I12N, K26R, N27H, K38E; pro: T4S; rev: V16A, P28L, L60I, P67S, P100N, S106P, A108E; tat: N7K, N23T, K24E, A29H, T40K, N67D; vif: K36R, F39Y, I65V, T74P, R77K, V85A, L125V, G185E, T188I; vpr: F34Y, I60L, Q66H, I84M; vpu: V14I, V21I, P76L"}}}, {"name": "AF289549", "node_attrs": {"div": 0.12525, "accession": "AF289549", "clade_membership": {"value": "CRF10_CD"}, "country": {"value": "TZ"}, "date": {"value": 1996.0}, "Strain_name": {"value": "96TZ_BF071"}, "LANL_subtype": {"value": "CRF10_CD"}}, "branch_attrs": {"mutations": {"nuc": ["A612C", "C619A", "T635G", "A649G", "G702A", "T747A", "T748C", "G755A", "A764G", "C765T", "C767T", "C771T", "T774A", "T794C", "G797A", "T884C", "A914G", "C922G", "T936C", "A941G", "G992T", "A1019G", "A1077G", "A1089G", "C1098G", "C1099T", "C1137T", "G1173A", "C1334T", "T1362C", "A1367G", "G1394A", "A1404G", "G1450A", "T1451G", "A1493C", "A1498G", "A1528G", "A1661G", "A1742G", "C1753T", "G1766A", "C1789T", "C1790T", "A1843C", "T1895G", "A1903C", "A1908G", "G1912A", "A1930G", "C1970G", "G1972A", "T1986C", "A2002C", "A2197G", "A2215C", "A2272G", "A2340G", "G2341A", "A2367G", "T2383C", "A2413G", "T2431G", "C2452T", "T2456G", "A2463G", "A2677G", "G2683A", "A2693G", "T2694C", "A2707C", "G2765A", "T2845A", "G2951A", "A2959G", "C3067T", "C3075T", "A3088G", "G3097T", "T3121C", "C3175T", "A3196G", "C3224A", "A3225T", "A3226G", "T3232C", "G3238A", "C3266T", "A3274C", "A3277G", "G3280A", "C3307G", "T3346C", "A3366G", "G3367A", "C3380T", "G3382A", "A3388G", "C3405T", "G3442C", "T3493C", "C3500A", "A3529G", "G3548A", "T3577C", "A3676C", "A3718G", "G3740C", "A3760G", "A3825G", "A3880G", "T4039A", "C4129T", "T4147C", "G4294A", "C4404G", "T4474G", "C4492A", "A4495G", "A4498T", "C4537T", "G4677A", "A4687G", "A4709G", "T4742C", "C4761T", "A4769T", "C4833A", "A4937C", "T4943C", "G4949A", "A4967G", "A4990T", "A5065G", "A5112G", "G5187C", "C5203T", "T5215G", "A5226G", "C5306T", "G5357T", "C5398T", "A5453T", "A5463C", "A5614G", "A5644G", "T5645C", "T5728A", "T5731C", "G5775A", "A5793G", "T5799A", "C5805A", "T5834C", "C5859G", "A5861-", "C5862-", "G5863-", "G5864-", "A5865-", "G5866-", "G5869C", "T5870C", "A5912G", "G5948T", "C5949A", "A5950T", "C5958A", "A5981G", "C6007T", "A6020C", "A6031G", "G6035A", "G6066A", "G6073A", "G6113A", "-6170G", "-6173A", "-6174C", "-6175T", "A6177G", "C6180G", "A6189G", "-6195A", "-6199T", "-6200G", "-6201A", "-6202C", "-6203A", "-6204C", "-6205G", "-6206G", "A6275C", "C6281A", "T6287C", "T6347C", "C6375A", "T6457C", "G6458A", "A6465C", "A6481T", "A6488G", "A6490C", "C6493T", "G6508A", "C6513T", "C6599A", "G6605A", "A6606G", "A6609G", "G6611C", "C6612T", "A6743G", "T6758C", "T6815C", "G6818A", "C6843A", "A6859T", "C6862T", "A6881G", "T6932A", "A6936T", "G6948A", "C6951G", "-6952T", "T6953G", "G6954A", "G6955A", "-6956T", "-6957G", "-6958G", "-6960A", "-6963A", "-6967A", "-6968G", "-6969G", "-6970T", "G6972A", "-6976T", "-6977T", "-6978C", "C7014T", "C7016A", "A7040G", "G7055A", "G7056A", "A7101G", "T7114C", "T7117A", "G7146C", "T7147A", "A7155C", "T7228C", "G7322A", "A7357G", "G7440A", "G7508A", "A7575T", "T7604G", "C7605A", "C7625T", "G7630T", "A7632C", "T7642-", "A7643-", "A7644-", "G7660T", "T7690C", "T7722A", "C7742A", "C7754G", "A7818G", "A7859G", "A7891G", "A7989C", "G7998A", "G8014A", "A8029T", "C8033A", "A8036G", "T8182C", "A8228G", "G8285A", "T8290G", "C8291A", "C8304G", "T8321G", "T8322C", "A8335C", "G8387T", "G8388A", "T8414G", "T8495C", "A8527C", "A8531G", "G8534T", "A8540G", "C8543T", "G8590C", "A8594C", "T8646C", "G8660A", "C8699T", "G8794A", "C8838G", "C8868G", "G8888A", "A8892C", "G8902T", "T8914A", "A8917C", "A8936G", "G8955A", "-8970A", "-8971C", "-8972T", "-8973T", "-8974T", "-8975C", "-8976T", "-8977G", "-8978C", "-8979T", "A8980-", "G8991A", "A8998-", "T9000G", "G9008-", "C9012A", "T9046C", "T9084G", "A9095G"], "INT": ["N17S", "T210S"], "RT-p51": ["K82R", "Q91R", "D123G", "I200A", "E204D", "E224K", "A286T", "A327V", "Q334H", "M357R", "Q377M", "D404E", "K424R", "A437V"], "RT-p66": ["K82R", "Q91R", "D123G", "I200A", "E204D", "E224K", "A286T", "A327V", "Q334H", "M357R", "Q377M", "D404E", "K424R", "A437V", "E449D", "V467I", "A485T", "K527N", "D549H"], "gp120": ["A2G", "T3N", "E4-", "K5-", "T20A", "A32Y", "T35E", "T43A", "I56L", "V61I", "G71D", "I106V", "-107A", "N108S", "-109N", "T110A", "N112T", "-114S", "-115T", "-116D", "-117S", "-118D", "-119T", "-120G", "-121M", "K141Q", "Q143K", "Y145H", "T174K", "D202N", "K204T", "K212D", "T220I", "L249I", "D251S", "N252S", "A253L", "N297D", "G322R", "N327-", "T329K", "I343V", "S360T", "K361I", "S365-", "-369N", "-370S", "-371E", "-372W", "S373T", "-381G", "G382N", "-383T", "-384S", "L388I", "I396V", "G401K", "N416S", "G430R", "A432G", "N433A", "S436T", "N437S"], "gp41": ["R46K", "V69I", "H91L", "S101D", "E110A", "N114M", "M115T", "T116-", "E119D", "T140N", "K172R", "I186V", "Q229P", "G232D", "L244I", "I245V", "I282L", "I309V", "A328T", "L330I", "T334R", "L340A", "L344F"], "nef": ["D24E", "H40Y", "E62A", "E64G", "G83A", "H89F", "Y102H", "R151K", "H166D", "P176A", "V182I", "K184Q", "S187I", "K192T", "D205N"], "p1": ["N9H"], "p17": ["K93Q", "E105G", "G123R"], "p2": ["N9K"], "p24": ["L6T", "H12Y", "P14S", "L15I", "A64G", "S120G", "P123V", "V148I", "S225G"], "p6": ["I21M", "S25F", "P37L"], "p7": ["K11R", "E21G"], "pro": ["L33V", "E35D", "N37S", "Q58E", "L63P"], "rev": ["G56S", "S61C", "T62D", "Y63C", "S112P"], "tat": ["Y26F"], "vif": ["V31I", "K34R", "E61D", "H83N", "E117D", "Y135F", "K160R", "K176E"], "vpr": ["Q3R", "S28T", "I37M", "N41S"], "vpu": ["I13A", "W41R"]}, "labels": {"aa": "INT: N17S, T210S; RT-p51: K82R, Q91R, D123G, I200A, E204D, E224K, A286T, A327V, Q334H, M357R, Q377M, D404E, K424R, A437V; RT-p66: K82R, Q91R, D123G, I200A, E204D, E224K, A286T, A327V, Q334H, M357R, Q377M, D404E, K424R, A437V, E449D, V467I, A485T, K527N, D549H; gp120: A2G, T3N, E4-, K5-, T20A, A32Y, T35E, T43A, I56L, V61I, G71D, I106V, -107A, N108S, -109N, T110A, N112T, -114S, -115T, -116D, -117S, -118D, -119T, -120G, -121M, K141Q, Q143K, Y145H, T174K, D202N, K204T, K212D, T220I, L249I, D251S, N252S, A253L, N297D, G322R, N327-, T329K, I343V, S360T, K361I, S365-, -369N, -370S, -371E, -372W, S373T, -381G, G382N, -383T, -384S, L388I, I396V, G401K, N416S, G430R, A432G, N433A, S436T, N437S; gp41: R46K, V69I, H91L, S101D, E110A, N114M, M115T, T116-, E119D, T140N, K172R, I186V, Q229P, G232D, L244I, I245V, I282L, I309V, A328T, L330I, T334R, L340A, L344F; nef: D24E, H40Y, E62A, E64G, G83A, H89F, Y102H, R151K, H166D, P176A, V182I, K184Q, S187I, K192T, D205N; p1: N9H; p17: K93Q, E105G, G123R; p2: N9K; p24: L6T, H12Y, P14S, L15I, A64G, S120G, P123V, V148I, S225G; p6: I21M, S25F, P37L; p7: K11R, E21G; pro: L33V, E35D, N37S, Q58E, L63P; rev: G56S, S61C, T62D, Y63C, S112P; tat: Y26F; vif: V31I, K34R, E61D, H83N, E117D, Y135F, K160R, K176E; vpr: Q3R, S28T, I37M, N41S; vpu: I13A, W41R"}}}]}]}, {"name": "results/subtype_trees/D.nwk", "node_attrs": {"div": 0.056979999999999996, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["-167G", "A227C", "A256-", "C435A", "A1289T", "G1835A", "T2080C", "A2473G", "G2914A", "C2968A", "G2972A", "T2983A", "G3010A", "A3046G", "G3151A", "A3154G", "G3165T", "C3171G", "C3359T", "A3388G", "G3398A", "A3529G", "A3562G", "G3595A", "T3695G", "A3715G", "A3781G", "C4006T", "C4258T", "T4426C", "A4495G", "A4498T", "C4652A", "A4692C", "A4721C", "A4725C", "G4726C", "A4727T", "T4730C", "T4827C", "T4835G", "C4857A", "G4859A", "A4862G", "C4914T", "G4949A", "A4967T", "A5024G", "G5448A", "-5620G", "-5809G", "-5810G", "C5859T", "T5920C", "G5948T", "T6025A", "A6037C", "-6173A", "G6179-", "A6186-", "-6215A", "-6218G", "-6220G", "-6226A", "A6263T", "G6442A", "A6668T", "G6693A", "G6725A", "G6731A", "-6952A", "-6960A", "-6967A", "A8540G", "G8590C", "T8595G", "T8597A", "C8603T", "A8647G", "C8648G", "G8678T", "A8772G", "A8829T", "A8893G", "G8894A", "G8898A", "C8913T", "A8916G", "T8923A", "C8934A", "T8935A", "A8967C", "-8971C", "-8974T", "G9016A", "A9095G"], "RT-p51": ["D40E", "Q245K", "D291E", "V293I", "S359G", "V435I"], "RT-p66": ["D40E", "Q245K", "D291E", "V293I", "S359G", "V435I", "S491L", "N519S", "S534A", "S554N"], "gp120": ["A2V", "A32S", "N113-", "E136V", "I137L", "F289L", "D294-", "A412E"], "nef": ["G83A", "F85V", "Y102W", "K144E", "K184R", "D186N", "K192E", "I194K", "L198K"], "p1": ["N9H"], "p17": ["L34I"], "pro": ["V13I"], "rev": ["K115E"], "vif": ["N22K", "K36Q", "E45D", "R47P", "H83Q", "Q91K", "T159I"], "vpu": ["-68G"]}, "labels": {"aa": "RT-p51: D40E, Q245K, D291E, V293I, S359G, V435I; RT-p66: D40E, Q245K, D291E, V293I, S359G, V435I, S491L, N519S, S534A, S554N; gp120: A2V, A32S, N113-, E136V, I137L, F289L, D294-, A412E; nef: G83A, F85V, Y102W, K144E, K184R, D186N, K192E, I194K, L198K; p1: N9H; p17: L34I; pro: V13I; rev: K115E; vif: N22K, K36Q, E45D, R47P, H83Q, Q91K, T159I; vpu: -68G", "clade": "D"}}, "children": [{"name": "D_NODE_0000001", "node_attrs": {"div": 0.05909999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A774C", "A2380G", "C2485T", "G2980A", "A3651G", "T5704A", "G5794A", "-6194A", "-6195A", "-6196T", "-6199T", "-6200A", "-6223A", "A6261T", "T7095A", "C7102A", "-7162T", "A7477G", "A7620G", "T7642A", "A8051C", "A8288G", "A8426T", "C8499G"], "gp120": ["S278G", "G307R", "F325L", "N328K", "L414K"], "gp41": ["K106R", "T140I", "I293S"], "nef": ["P53A"], "rev": ["E68A", "D111E"], "vpu": ["L33I"]}, "labels": {"aa": "gp120: S278G, G307R, F325L, N328K, L414K; gp41: K106R, T140I, I293S; nef: P53A; rev: E68A, D111E; vpu: L33I"}}, "children": [{"name": "MH705152", "node_attrs": {"div": 0.09366999999999999, "accession": "MH705152", "clade_membership": {"value": "D"}, "country": {"value": "CD"}, "date": {"value": 1987.0}, "Strain_name": {"value": "PBS5635"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G2A", "T3G", "T9A", "T12C", "G32A", "A76G", "A77G", "A78G", "C96T", "G206A", "A265G", "A387G", "A388G", "A398G", "A425G", "C471A", "A491G", "C503G", "G519A", "G534T", "C558G", "A576C", "C577T", "G614T", "C641A", "A653G", "A672C", "G702A", "A711G", "A764C", "A803G", "G829A", "A839G", "C902T", "A920G", "A980G", "G1002A", "A1028G", "T1064A", "C1178T", "C1187T", "G1313T", "T1385C", "A1400G", "A1404G", "T1427C", "A1433G", "C1444T", "G1455A", "C1491A", "A1498G", "G1532A", "G1588A", "C1598T", "A1643G", "G1661A", "C1676T", "G1784T", "A1835G", "A1926G", "C1996T", "T2013C", "A2026G", "C2047T", "G2134A", "C2149G", "A2215G", "C2281T", "A2311G", "A2320G", "C2353T", "T2479A", "A2566G", "G2567T", "C2575T", "G2602T", "C2605T", "A2626C", "A2641G", "G2683C", "G2704A", "G2727A", "C2797A", "T2890C", "T2905C", "A2914G", "A3010G", "A3019G", "G3046A", "A3103G", "T3118C", "C3140T", "A3214G", "A3286T", "A3293G", "G3307T", "T3412C", "G3442A", "T3499C", "G3529A", "C3653A", "C3691T", "G3718A", "C3751T", "A3768G", "A3769G", "G3770A", "A3787G", "T3853C", "G3891A", "T3895C", "C3940T", "T3977C", "C3994T", "G3997A", "T4006C", "A4063C", "T4085C", "C4141T", "G4148A", "A4407G", "T4441A", "G4464A", "G4467A", "A4475G", "A4552G", "A4592C", "A4652C", "C4667T", "G4673A", "A4687G", "T4702G", "T4703G", "A4722T", "A4735G", "A4737G", "A4817G", "C4890T", "T4910C", "A4966G", "T5018A", "T5027C", "T5028C", "A5049G", "T5102C", "A5159G", "T5209C", "A5213C", "T5214C", "C5221T", "A5225G", "G5257A", "G5267A", "A5272G", "A5282T", "T5292C", "C5303A", "A5305G", "A5312G", "T5356C", "A5421G", "T5430C", "G5432A", "G5433A", "T5442C", "T5454C", "G5468C", "A5480C", "A5493G", "G5496A", "G5557A", "G5561A", "C5563A", "G5566A", "A5581G", "C5585A", "A5586G", "A5587C", "A5603C", "A5607G", "C5614A", "T5621A", "G5622A", "T5626A", "T5636C", "A5652G", "A5677T", "T5686C", "G5700A", "G5712A", "A5721G", "A5748T", "C5763T", "C5795A", "A5805G", "T5826C", "G5839A", "G5869T", "A5954G", "A5956T", "A5972G", "A6065G", "A6108G", "C6139T", "C6160T", "-6170G", "-6172A", "-6174A", "-6175T", "-6179T", "-6180C", "-6181T", "C6183T", "T6184C", "-6186C", "-6187T", "A6188C", "-6189T", "A6197T", "-6198C", "-6201C", "-6202C", "-6203C", "-6204A", "-6205T", "-6216T", "-6217G", "-6221G", "-6222C", "-6224G", "-6225G", "A6253C", "A6275C", "A6276G", "T6285A", "A6329G", "G6379A", "C6412T", "C6427A", "T6436G", "C6446T", "A6449C", "T6457A", "A6500T", "A6525G", "T6551C", "A6639C", "T6641A", "A6648C", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "A6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6720A", "C6721T", "T6722G", "A6723C", "T6724A", "A6725T", "A6731G", "A6733G", "T6738C", "A6767C", "G6773A", "G6779C", "C6797G", "A6822G", "T6850C", "A6854G", "A6936C", "C6951G", "A6952T", "T6953-", "G6954-", "G6955-", "-6956T", "-6957T", "-6958T", "A6959G", "-6963C", "T6964A", "-6968A", "-6969G", "-6970T", "-6971A", "-6972A", "-6973T", "-6974A", "-6975G", "-6976T", "-6977A", "-6978C", "-6979A", "-6980G", "-6981A", "-6982G", "-6983T", "-6984C", "-6985A", "A6989G", "-6993G", "-6994T", "A7089C", "C7094A", "A7096G", "A7100G", "A7102G", "T7114C", "A7148G", "A7149C", "T7150A", "G7158A", "-7160A", "A7161G", "A7299G", "C7313T", "T7432C", "A7525G", "G7633C", "C7651A", "T7691C", "C7699T", "G7717A", "A7721G", "A7744G", "G7777A", "A7818G", "C7843T", "T7912C", "G7915A", "T7921A", "T7968C", "A8036T", "C8080A", "A8093C", "A8098G", "C8103T", "A8204G", "A8216G", "G8245A", "C8277T", "T8279G", "A8294C", "A8297G", "A8308G", "G8323T", "A8335G", "C8336A", "C8419T", "A8455G", "C8488G", "A8493T", "T8505A", "G8508A", "C8543T", "T8563C", "T8594G", "A8636T", "T8640C", "G8654A", "C8684G", "C8768T", "A8783C", "G8784A", "T8786G", "G8817-", "G8818-", "A8819-", "A8844C", "C8868A", "C8869A", "T8883C", "A8886G", "C8966T", "C8971T", "G9007A", "A9042G", "T9074G", "G9117A"], "INT": ["S39N", "E96D", "A125T", "K211R", "N222K", "S230N", "R231K", "I234V", "K273Q"], "RT-p51": ["A158S", "E169D", "E177D", "R211K", "Q377T", "T400A", "T403I", "E404D"], "RT-p66": ["A158S", "E169D", "E177D", "R211K", "Q377T", "T400A", "M403I", "E404D", "Q520K", "K558R", "V559I"], "gp120": ["K34D", "I40V", "N71D", "D85G", "-106L", "-107N", "-109S", "-111H", "-121M", "-122E", "-123A", "-124G", "K141R", "V144E", "N159D", "N160K", "K199Q", "N201K", "T216S", "K224R", "D251N", "E262A", "S263T", "N272Y", "T292S", "G293T", "-294E", "I305L", "E309Q", "Q315E", "N323G", "K334E", "K361A", "W367T", "N368S", "-372E", "-374N", "-375D", "-376S", "N378-", "T380-", "-385T", "E412A", "N416E", "K482R"], "gp41": ["L24M", "E110D", "N113K", "I140V", "K172R", "F206L", "I222T", "I245F", "I264L", "A267V", "I301V", "N305D", "A325V", "C326G", "N331H", "I332V", "L340F", "L345I"], "nef": ["A26V", "E28D", "E38G", "A49G", "T51S", "C55S", "A56T", "V74A", "E98D", "Y120F", "V148M", "G159-", "M168L", "C169S", "P176K"], "p17": ["K18G", "L46I", "G62R", "A67S", "L75V", "T81L", "E93D", "D102E", "K113Q", "G123R", "S126G"], "p2": ["A7V", "A11T"], "p24": ["S33N", "V91I", "S225G"], "p6": ["T39A"], "p7": ["P9T", "K11R", "R41K"], "pro": ["I13V", "K43R", "L63P", "I72T"], "rev": ["V16I", "Q24S", "Y63F", "L78I", "N82T", "N84D"], "tat": ["R19K", "C31S", "Q35P", "S62N", "Q63K", "A64T", "I69V", "P70Q", "K71Q", "*87Q"], "vif": ["E2D", "K22N", "M29I", "K34R", "F39W", "S46C", "K50R", "I51V", "H127R", "T155A"], "vpr": ["T19A", "I37P", "S41G", "A55T", "I60L", "I63T", "L67M", "I70V", "I84T"], "vpu": ["P3T", "V5E", "L7I", "V10A", "T24S", "F27L", "R47S", "E63K", "D78N"]}, "labels": {"aa": "INT: S39N, E96D, A125T, K211R, N222K, S230N, R231K, I234V, K273Q; RT-p51: A158S, E169D, E177D, R211K, Q377T, T400A, T403I, E404D; RT-p66: A158S, E169D, E177D, R211K, Q377T, T400A, M403I, E404D, Q520K, K558R, V559I; gp120: K34D, I40V, N71D, D85G, -106L, -107N, -109S, -111H, -121M, -122E, -123A, -124G, K141R, V144E, N159D, N160K, K199Q, N201K, T216S, K224R, D251N, E262A, S263T, N272Y, T292S, G293T, -294E, I305L, E309Q, Q315E, N323G, K334E, K361A, W367T, N368S, -372E, -374N, -375D, -376S, N378-, T380-, -385T, E412A, N416E, K482R; gp41: L24M, E110D, N113K, I140V, K172R, F206L, I222T, I245F, I264L, A267V, I301V, N305D, A325V, C326G, N331H, I332V, L340F, L345I; nef: A26V, E28D, E38G, A49G, T51S, C55S, A56T, V74A, E98D, Y120F, V148M, G159-, M168L, C169S, P176K; p17: K18G, L46I, G62R, A67S, L75V, T81L, E93D, D102E, K113Q, G123R, S126G; p2: A7V, A11T; p24: S33N, V91I, S225G; p6: T39A; p7: P9T, K11R, R41K; pro: I13V, K43R, L63P, I72T; rev: V16I, Q24S, Y63F, L78I, N82T, N84D; tat: R19K, C31S, Q35P, S62N, Q63K, A64T, I69V, P70Q, K71Q, *87Q; vif: E2D, K22N, M29I, K34R, F39W, S46C, K50R, I51V, H127R, T155A; vpr: T19A, I37P, S41G, A55T, I60L, I63T, L67M, I70V, I84T; vpu: P3T, V5E, L7I, V10A, T24S, F27L, R47S, E63K, D78N"}}}, {"name": "D_NODE_0000002", "node_attrs": {"div": 0.06301999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "-256A", "T794C", "G818A", "T1229C", "A1450G", "C1502T", "G2140A", "G2925A", "A3099G", "A3162G", "C4177T", "G4642A", "A4643C", "C5203T", "T5491A", "A5896G", "A6001G", "A6076C", "T6263G", "G6311A", "C6618A", "-6689A", "A6732G", "G6821A", "C6895T", "A7198G", "G7239A", "A7640C", "A7765G", "C7801A", "G8264A", "C8306A", "A8537G"], "RT-p51": ["R277K", "D335G", "K356R"], "RT-p66": ["R277K", "D335G", "K356R"], "gp120": ["E74D", "T110-", "L137V", "V153I", "T255N", "K361G", "N435S", "R462K"], "gp41": ["L24V", "N113Q", "N166Q", "V321I"], "tat": ["L39I"], "vif": ["R19N"], "vpu": ["E63T"]}, "labels": {"aa": "RT-p51: R277K, D335G, K356R; RT-p66: R277K, D335G, K356R; gp120: E74D, T110-, L137V, V153I, T255N, K361G, N435S, R462K; gp41: L24V, N113Q, N166Q, V321I; tat: L39I; vif: R19N; vpu: E63T"}}, "children": [{"name": "KY392769", "node_attrs": {"div": 0.11595, "accession": "KY392769", "clade_membership": {"value": "D"}, "country": {"value": "CD"}, "date": {"value": 2002.0}, "Strain_name": {"value": "CG_0382_02V_NGSID3"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A152C", "C153A", "T154A", "T213C", "G215A", "C227A", "C258T", "A371C", "T377C", "G378A", "C379G", "A388G", "T396C", "G407A", "A428G", "G455A", "T495G", "A513T", "G524A", "G534T", "C558A", "A571T", "G579A", "A585G", "C586T", "G603A", "A605T", "C641T", "A675C", "G677A", "G696A", "C698T", "A706G", "C713T", "C719T", "C722T", "G740A", "G770A", "G771C", "A815G", "G821A", "G822A", "C823A", "A836G", "T852A", "C853T", "C890T", "C893T", "C902T", "G906A", "G908A", "C926T", "C1060A", "A1070C", "G1078C", "A1101G", "A1134G", "A1142G", "A1250G", "A1359T", "A1364G", "G1394A", "G1455A", "C1460G", "A1473G", "G1476A", "T1481A", "G1487A", "A1503G", "C1517T", "G1589A", "A1601G", "T1610C", "A1644T", "A1657C", "A1664G", "T1679C", "A1762C", "G1794A", "T1796C", "G1858A", "C1986T", "A2007G", "T2011C", 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"S360T", "G361D", "N364K", "S365R", "S373-", "N378-", "T380-", "-382G", "-383S", "-384E", "-385N", "P389Q", "G401E", "N416K", "L425I", "A432N", "N434S", "S436T", "F440L", "E479Q"], "gp41": ["V24I", "Q32L", "L54M", "H91L", "N96T", "G129S", "E137I", "N160S", "S163D", "F206L", "I222T", "E223G", "I235V", "V238L", "N239T", "A243E", "I264L", "A281V", "S293G", "K297R", "I301T", "V318I", "A325L", "L330I", "N331H", "R334T", "L345N"], "nef": ["D24N", "V33A", "T50A", "L58V", "A83G", "V85L", "H116N", "D149N", "K151E", "E179Q", "V182R", "E192V", "K194M", "R196K", "Y203F", "C206R"], "p1": ["I5F", "H9P"], "p17": ["K12N", "A15R", "K18R", "S54A", "I60L", "A67S", "L75I", "Y79F", "V82I", "T84V", "E90N", "K114Q", "D121N", "N124S"], "p2": ["N9S"], "p24": ["A14P", "A31N", "S41I", "V59I", "T110N", "E113D", "G116A", "I124V", "I135V", "T210S"], "p6": ["Q28P"], "p7": ["R3G", "G4S", "N5K", "I13V"], "pro": ["K70R"], "rev": ["L18I", "H53G", "G56A", "E57D", "L60F", "S61R", "S67P", "A68P", "L73F", "L78I", "N82T", "N84D", "P100S", "S103P", "S106P", "E111G"], "tat": ["K24Q", "V36C", "P58S", "Q60K", "A64D", "I69L", "P81Q", "*87Q"], "vif": ["K34E", "E78D", "R92K", "S95T", "I124L", "K157R", "I159R", "G185E"], "vpr": ["I37V", "R85L", "A89T"], "vpu": ["Q2T", "V5E", "L7F", "V13I", "V14I", "I18L", "F27Y", "R31K", "R35K", "I43F", "E66D", "H74D", "P76L", "V79I"]}, "labels": {"aa": "INT: N17S, D167E, T218I, A265V; RT-p51: T39A, K43Q, S48T, R49K, V118I, I178L, V179T, F214L, P243T, V292I, I293V, Q334Y, F346L, K350R, A376S, T400A, E432D, I435V; RT-p66: T39A, K43Q, S48T, R49K, V118I, I178L, V179T, F214L, P243T, V292I, I293V, Q334Y, F346L, K350R, A376S, T400A, M403T, E432D, I435V, L517I; gp120: N5Q, K34S, E57V, -106V, -107Q, N108C, -109N, -110N, -111T, -112T, -113C, -114N, -115S, -116T, -117G, S130T, I133V, R138S, Q143K, Y145Q, Q155E, N158P, N159G, S162G, S181T, T216S, L249I, T250S, T269I, I281M, Q287R, L289F, T292H, G293S, -294S, E309Q, K312R, Q315E, G322S, N323S, I332K, K334E, P335N, S360T, G361D, N364K, S365R, S373-, N378-, T380-, -382G, -383S, -384E, -385N, P389Q, G401E, N416K, L425I, A432N, N434S, S436T, F440L, E479Q; gp41: V24I, Q32L, L54M, H91L, N96T, G129S, E137I, N160S, S163D, F206L, I222T, E223G, I235V, V238L, N239T, A243E, I264L, A281V, S293G, K297R, I301T, V318I, A325L, L330I, N331H, R334T, L345N; nef: D24N, V33A, T50A, L58V, A83G, V85L, H116N, D149N, K151E, E179Q, V182R, E192V, K194M, R196K, Y203F, C206R; p1: I5F, H9P; p17: K12N, A15R, K18R, S54A, I60L, A67S, L75I, Y79F, V82I, T84V, E90N, K114Q, D121N, N124S; p2: N9S; p24: A14P, A31N, S41I, V59I, T110N, E113D, G116A, I124V, I135V, T210S; p6: Q28P; p7: R3G, G4S, N5K, I13V; pro: K70R; rev: L18I, H53G, G56A, E57D, L60F, S61R, S67P, A68P, L73F, L78I, N82T, N84D, P100S, S103P, S106P, E111G; tat: K24Q, V36C, P58S, Q60K, A64D, I69L, P81Q, *87Q; vif: K34E, E78D, R92K, S95T, I124L, K157R, I159R, G185E; vpr: I37V, R85L, A89T; vpu: Q2T, V5E, L7F, V13I, V14I, I18L, F27Y, R31K, R35K, I43F, E66D, H74D, P76L, V79I"}}}, {"name": "D_NODE_0000003", "node_attrs": {"div": 0.06739999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A161C", "T163A", "A265G", "A690G", "A743G", "T1289A", "G1313A", "A1400G", "T1406C", "A1670G", "T2071C", "A2470G", "T3497C", "C3500T", "G3715A", "G3718A", "C4665T", "C4692A", "T5018C", "A5049G", "T5356C", "A5587G", "C5850T", "T5859C", "G5869T", "G5902A", "A6346G", "A6580C", "T6719C", "T6745C", "A6810G", "G6838A", "A6936G", "C7099T", "A7373G", "A7642G", "G7658C", "T7880A", "A8335G", "T8640C", "A9016G", "C9108T"], "RT-p51": ["Q377T", "T403I"], "RT-p66": ["Q377T", "S468P", "L469F"], "gp120": ["V2A", "T265E", "K277Q", "G278R", "A291T", "K414Q"], "gp41": ["E119Q", "L193V"], "nef": ["E28D"], "p17": ["T119A"], "vif": ["H27Y", "Q36K", "T155A"], "vpr": ["I84T"]}, "labels": {"aa": "RT-p51: Q377T, T403I; RT-p66: Q377T, S468P, L469F; gp120: V2A, T265E, K277Q, G278R, A291T, K414Q; gp41: E119Q, L193V; nef: E28D; p17: T119A; vif: H27Y, Q36K, T155A; vpr: I84T"}}, "children": [{"name": "D_NODE_0000004", "node_attrs": {"div": 0.07569999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T305A", "A374G", "A419G", "A425G", "A537C", "C540A", "A562G", "G829A", "T974C", "A1043T", "G1268A", "A1454T", "A1503G", "G1588A", "G1858A", "A1903C", "G1906A", "A2008G", "T2476C", "C2671T", "G2705A", "T2735C", "A2829C", "A2968G", "A3019G", "C3225T", "A3502T", "G3643A", "G3664A", "A3756G", "A3825G", "A4114G", "C4321T", "A4407G", "C4761T", "A4769T", "A4786C", "A4937C", "T5062G", "A5121C", "C5221T", "G5566A", "C5614T", "A5652G", "G5853A", "A5866T", "-6186A", "-6202C", "A6219-", "A6268G", "A6733G", "G6779A", "A6790C", "C6823A", "A6838C", "C7012A", "A7015C", "C7016A", "G7399A", "G7633T", "G7701A", "G7753A", "G7992A", "C8320T", "G8323A", "A8503C", "A8643G", "G8647A", "G8648C", "A8762G", "A8797T", "T8835C", "A8886G", "C8928A", "A8950T"], "INT": ["N17S", "A125T", "K211R"], "RT-p51": ["T200A", "E204K", "F214L", "K245T"], "RT-p66": ["T200A", "E204K", "F214L", "K245T", "N554S"], "gp120": ["E4D", "I243V", "R307G", "E309K", "K312N", "L388I"], "gp41": ["S133N", "G230D"], "nef": ["D54A", "I101V", "W102Y", "E152V", "Y203F"], "p17": ["Q69K", "K76R"], "p24": ["S33N"], "p7": ["I13V", "R41K"], "pro": ["E35D", "M36I"], "tat": ["K24N", "A64T"], "vif": ["E61D", "K67T", "E117D", "I159R", "K179Q"], "vpr": ["E6A"], "vpu": ["P3S"]}, "labels": {"aa": "INT: N17S, A125T, K211R; RT-p51: T200A, E204K, F214L, K245T; RT-p66: T200A, E204K, F214L, K245T, N554S; gp120: E4D, I243V, R307G, E309K, K312N, L388I; gp41: S133N, G230D; nef: D54A, I101V, W102Y, E152V, Y203F; p17: Q69K, K76R; p24: S33N; p7: I13V, R41K; pro: E35D, M36I; tat: K24N, A64T; vif: E61D, K67T, E117D, I159R, K179Q; vpr: E6A; vpu: P3S"}}, "children": [{"name": "U88822", "node_attrs": {"div": 0.10699999999999998, "accession": "U88822", "clade_membership": {"value": "D"}, "country": {"value": "CD"}, "date": {"value": 1984.0}, "Strain_name": {"value": "84ZR085"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T45C", "A46G", "C96T", "G119T", "C151A", "A152G", "A163G", "C227A", "A263T", "A301G", "A380T", "G424A", "G452A", "A458G", "C483T", "T485G", "A518G", "G520A", "T567A", "G603A", "G615A", "A665C", "A676G", "A697G", "G740A", "G752A", "T992G", "A1190C", "T1238C", "T1271A", "A1328G", "G1472A", "G1474A", "G1476A", "C1491A", "A1543G", "C1550T", "G1718-", "T1754C", "G1766A", "T1790C", "C1826G", "A1921G", "A1981C", "C1986T", "T2035C", "T2092C", "A2170G", "A2215T", "A2374G", "G2380A", "G2392A", "C2393T", "A2398G", "A2407G", "G2411A", "T2431C", "G2447A", "G2456T", "A2457G", "G2539A", "C2589T", "A2627G", "G2683A", "A2693G", "A2722G", "A2734G", "A2809G", "C2822T", "A2839G", "G2951A", "A2956G", "A3028G", "G3035A", "A3037G", "A3080T", "C3100T", "A3196G", "G3307C", "G3316A", "G3340A", "G3438A", "T3499C", "T3602C", "A3709T", "A3805G", "C3922A", "T3967C", "A4064G", "G4148A", "T4165C", "A4333G", "A4391T", "C4396T", "T4674C", "G4677A", "T4712C", "T4932G", "A4946C", "T4988A", "G5030A", "T5078C", "G5086A", "A5119G", "A5134G", "T5197C", "C5237T", "G5359C", "C5398A", "G5403T", "A5448T", "A5556C", "G5557A", "G5587A", "G5620C", "T5621A", "G5622A", "G5647T", "A5698C", "G5700T", "A5702G", "C5756A", "G5781A", "T5788C", "A5796C", "T5869C", "G5896A", "T5923G", "G6001A", "G6029A", "C6046T", "T6064C", "C6097T", "C6115T", "T6144G", "C6160T", "-6170G", "T6171C", "-6172A", "A6173T", "-6174C", "-6175G", "A6177G", "T6178A", "A6182-", "C6183-", "T6184-", "-6187C", "-6189G", "A6192C", "A6194G", "-6198A", "-6201A", "-6203A", "-6204G", "-6205C", "-6206A", "-6207C", "-6208A", "-6209C", "-6210T", "-6211G", "-6212C", "-6213C", "-6214A", "-6216C", "-6217G", "-6219T", "-6221A", "-6222A", "-6224G", "-6225G", "G6267C", "A6276G", "T6287C", "A6311G", "A6329G", "T6331G", "A6332G", "A6333G", "C6336A", "T6337A", "G6339A", "G6379A", "G6391A", "T6457C", "G6463A", "A6465G", "A6500T", "A6525G", "G6553A", "A6581G", "T6586A", "A6618T", "G6631T", "G6638C", "A6647G", "C6673A", "T6676G", "A6677G", "C6678A", "A6683C", "T6688G", "T6690C", "A6693C", "C6708A", "A6718G", "T6735C", "T6738C", "G6740A", "A6742G", "G6743A", "A6744T", "C6745A", "A6749G", "C6758T", "C6777T", "T6793C", "A6798G", "A6821-", "T6825C", "C6827T", "-6830G", "-6831A", "-6832A", "A6833C", "A6834C", "C6835A", "C6840A", "A6842-", "C6843-", "C6874T", "A6950G", "-6963T", "T6964A", "A6965T", "-6968G", "-6969G", "-6970A", "-6971C", "-6972A", "-6973T", "-6974A", "-6975G", "-6976T", "-6977A", "-6978C", "-6979A", "-6980G", "-6981G", "-6982G", "-6983T", "-6984T", "-6985A", "A6989G", "-6993C", "-6994A", "C7008T", "A7009C", "G7056A", "A7093G", "A7102T", "A7148G", "A7149C", "G7158C", "-7160C", "T7162G", "G7168C", "C7174T", "G7198A", "T7204C", "G7373A", "T7400G", "G7508A", "G7519A", "A7531G", "A7590C", "G7594A", "C7625G", "T7630G", "G7631T", "C7640G", "A7641G", "A7687G", "A7705G", "A7771G", "A7799C", "T7870A", "G7873A", "A7903G", "C7913T", "G7915A", "A7918G", "C7960A", "C7999T", "G8001C", "C8051A", "C8089A", "G8173A", "A8184G", "G8185A", "C8213G", "A8216G", "C8221A", "G8255A", "A8263C", "C8270A", "A8271G", "A8272G", "G8283A", "T8290G", "A8294C", "G8304C", "A8409C", "T8414G", "A8432G", "A8458G", "C8514G", "A8528G", "G8531C", "A8617G", "G8619A", "G8717A", "C8751T", "G8753A", "A8793G", "G8805A", "G8822A", "A8823G", "G8846C", "A8847T", "C8868G", "C8869A", "G8875A", "A8876G", "A8918G", "G8929A", "G8933A", "C8937T", "T8947A", "A8954G", "G8955A", "C8966T", "T8973C"], "INT": ["T97A", "T206S"], "RT-p51": ["E40D", "V106I", "V118I", "D121C", "T165I", "I178V", "P243S", "A286T", "V314M", "I329L", "T377I", "E404D"], "RT-p66": ["E40D", "V106I", "V118I", "D121C", "T165I", "I178V", "P243S", "A286T", "V314M", "I329L", "T377I", "M403I", "E404D", "R448K"], "gp120": ["E59K", "L97R", "-106A", "-107K", "N108P", "-124G", "R138T", "K141R", "Y145H", "I153V", "N159E", "N160G", "T161K", "S162N", "K204R", "T216S", "K224R", "D251N", "N255I", "Q259H", "E262Q", "N272Y", "N273K", "N274K", "T275E", "I279T", "H280P", "P285Q", "T292I", "I295-", "G296-", "D297-", "I298-", "R299-", "H302Y", "A308V", "Q315R", "K319R", "N323-", "T330-", "T366A", "N369I", "T371G", "-372H", "-374T", "-376G", "-377L", "-379D", "-381I", "G401E", "S435T", "S436Q", "E438D"], "gp41": ["V24M", "L33V", "V69I", "N96T", "L108V", "D109E", "E110Y", "Q113G", "V193I", "R233T", "D262E", "Q294R", "L304V", "N305D", "V318I", "E320D", "Q323R", "R327K", "N331H", "R334T"], "nef": ["T23P", "D24E", "K39R", "L58V", "K92R", "E93K", "Y120F", "K151E", "E155K", "N161D", "M168I", "P176E", "R178K", "R196K", "H199Y", "F202Y", "D205N"], "p17": ["R30K", "I61M", "G62E", "I68L", "L78I", "E90K", "V94I", "K110N", "K114R", "D121G"], "p2": ["N9S"], "p24": ["H87Q", "D180E"], "p7": ["R3K", "G4S", "P9T", "K26R"], "pro": ["L10V", "Q61H"], "rev": ["K14T", "Q51Y", "A68E", "L81I", "V109I", "G113R"], "tat": ["L8I", "E9D", "Q60H", "P84Q"], "vif": ["Y30H", "V31I", "S116A", "D134E", "R167K", "Q178R", "H183R"], "vpr": ["H45Y", "R85P"], "vpu": ["V5Q", "V14L", "K32R", "A50E"]}, "labels": {"aa": "INT: T97A, T206S; RT-p51: E40D, V106I, V118I, D121C, T165I, I178V, P243S, A286T, V314M, I329L, T377I, E404D; RT-p66: E40D, V106I, V118I, D121C, T165I, I178V, P243S, A286T, V314M, I329L, T377I, M403I, E404D, R448K; gp120: E59K, L97R, -106A, -107K, N108P, -124G, R138T, K141R, Y145H, I153V, N159E, N160G, T161K, S162N, K204R, T216S, K224R, D251N, N255I, Q259H, E262Q, N272Y, N273K, N274K, T275E, I279T, H280P, P285Q, T292I, I295-, G296-, D297-, I298-, R299-, H302Y, A308V, Q315R, K319R, N323-, T330-, T366A, N369I, T371G, -372H, -374T, -376G, -377L, -379D, -381I, G401E, S435T, S436Q, E438D; gp41: V24M, L33V, V69I, N96T, L108V, D109E, E110Y, Q113G, V193I, R233T, D262E, Q294R, L304V, N305D, V318I, E320D, Q323R, R327K, N331H, R334T; nef: T23P, D24E, K39R, L58V, K92R, E93K, Y120F, K151E, E155K, N161D, M168I, P176E, R178K, R196K, H199Y, F202Y, D205N; p17: R30K, I61M, G62E, I68L, L78I, E90K, V94I, K110N, K114R, D121G; p2: N9S; p24: H87Q, D180E; p7: R3K, G4S, P9T, K26R; pro: L10V, Q61H; rev: K14T, Q51Y, A68E, L81I, V109I, G113R; tat: L8I, E9D, Q60H, P84Q; vif: Y30H, V31I, S116A, D134E, R167K, Q178R, H183R; vpr: H45Y, R85P; vpu: V5Q, V14L, K32R, A50E"}}}, {"name": "D_NODE_0000005", "node_attrs": {"div": 0.09461999999999998, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C281T", "G317A", "C379A", "G413C", "A491G", "A500T", "A516C", "A521C", "A571T", "C587A", "A620G", "C747T", "G770A", "T788C", "A815G", "C1137T", "C1187T", "G1205A", "C1304T", "A1340G", "G1397A", "T1452-", "C1460A", "A1475G", "G1495A", "A1496G", "A1498G", "C1656A", "G1736A", "A1981G", "C1987T", "T2087C", "C2281T", "A2395G", "G2428A", "C2464T", "T2485C", "T2499C", "A2579T", "C2584T", "C2605T", "G2610A", "A2627C", "G2704A", "G2727A", "C2953T", "C2960T", "G2984A", "A3025C", "A3027G", "A3080G", "A3109T", "A3111G", "T3112G", "A3293G", "A3304G", "C3322T", "C3376T", "G3385A", "T3499G", "A3511C", "T3567C", "A3574G", "G3791A", "A3792G", "A3805T", "G3814C", "G3859A", "G3907A", "T3977C", "G3989A", "C4138T", "A4150T", "T4192C", "C4721T", "A4751G", "T4919C", "T4969G", "A5051G", "G5066A", "C5091T", "T5182C", "T5206C", "A5225G", "C5242T", "T5293C", "T5311C", "T5430G", "G5433T", "A5446T", "A5447C", "A5481G", "G5482C", "C5530A", "G5532A", "A5533G", "G5561A", "A5576T", "C5578T", "A5581G", "T5687A", "A5718G", "T5731C", "G5800A", "T5826C", "A5846C", "T5860A", "T5884A", "C5916A", "C5917A", "C6010T", "C6076G", "A6195G", "T6196C", "T6199C", "A6215-", "G6218-", "G6220-", "T6285A", "C6317G", "G6451A", "T6523C", "C6545T", "A6583G", "A6605G", "A6628G", "G6638A", "T6641A", "A6649C", "A6654C", "C6660T", "T6668A", "A6684G", "A6715G", "G6732A", "G6776A", "T6794C", "A6823G", "T6949A", "-6963G", "-6971A", "-6995G", "-6996G", "-6997A", "-6999C", "-7000A", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "C7024T", "G7158A", "A7163-", "A7177G", "A7239G", "C7313T", "C7429T", "G7660A", "A7666G", "C7678A", "C7690T", "T7691G", "G7735A", "A7798T", "A7828C", "G7846A", "A7882G", "T7921C", "A8119C", "T8218C", "C8450T", "G8531A", "C8543T", "G8654A", "T8701A", "T8740C", "C8809A", "C8810G", "C8831T", "G8924A", "C8951T", "T9072C", "G9117A"], "INT": ["D6S", "E10D", "E13D", "V72I"], "RT-p51": ["I135T", "S162C", "R172K", "I178L", "R211K", "E297K", "K311R", "I329V", "Y339W", "T400A", "I403M"], "RT-p66": ["I135T", "S162C", "R172K", "I178L", "R211K", "E297K", "K311R", "I329V", "Y339W", "T400A", "L491S", "L517I"], "gp120": ["T21K", "D74E", "-113N", "-114S", "-115S", "V144E", "Q155E", "S263T", "E265N", "N267T", "T269I", "Q277R", "R278S", "G293D", "-294I", "A308T", "N323K", "K328N", "S365T", "N378-", "-385T", "N416K", "A432N", "K462R"], "gp41": ["E110D", "D125E", "L130V", "T165S", "Q166N", "V193M", "E272N", "L340F"], "nef": ["I133T", "A156E"], "p1": ["H9N"], "p17": ["A15Q", "K26N", "E55D", "I61L", "Y79F"], "p7": ["R10K", "K11R"], "pro": ["L63P"], "rev": ["S5R", "G6E", "A15T", "V16I", "I21F", "T91P"], "tat": ["R19S", "N24S", "V36L", "R53G", "S61D", "S62N", "D67V", "I69V", "K71E"], "vif": ["I128R"], "vpr": ["S41G"], "vpu": ["F27Y", "V65M"]}, "labels": {"aa": "INT: D6S, E10D, E13D, V72I; RT-p51: I135T, S162C, R172K, I178L, R211K, E297K, K311R, I329V, Y339W, T400A, I403M; RT-p66: I135T, S162C, R172K, I178L, R211K, E297K, K311R, I329V, Y339W, T400A, L491S, L517I; gp120: T21K, D74E, -113N, -114S, -115S, V144E, Q155E, S263T, E265N, N267T, T269I, Q277R, R278S, G293D, -294I, A308T, N323K, K328N, S365T, N378-, -385T, N416K, A432N, K462R; gp41: E110D, D125E, L130V, T165S, Q166N, V193M, E272N, L340F; nef: I133T, A156E; p1: H9N; p17: A15Q, K26N, E55D, I61L, Y79F; p7: R10K, K11R; pro: L63P; rev: S5R, G6E, A15T, V16I, I21F, T91P; tat: R19S, N24S, V36L, R53G, S61D, S62N, D67V, I69V, K71E; vif: I128R; vpr: S41G; vpu: F27Y, V65M"}}, "children": [{"name": "D_NODE_0000006", "node_attrs": {"div": 0.10152999999999998, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A412G", "T1263A", "T1271A", "T1322C", "A1404G", "T2005G", "T2440C", "G2459A", "T2479G", "G2630A", "C2639T", "A2640C", "C2749T", "A2925G", "C3095G", "G3170A", "G3477A", "C3511T", "G3569A", "C3751T", "G4495A", "A4766G", "G4856A", "C4889T", "T4932A", "A4993C", "A5059G", "T5648C", "T5728C", "A5865G", "C6145A", "-6172C", "-6174A", "-6189A", "G6339-", "T6436A", "A6464C", "A6465T", "A6640T", "G6644A", "C6719T", "G6810A", "-6970G", "-6979A", "A6990G", "-6993C", "-6994A", "A7152C", "A7164-", "T7165-", "A7269G", "A7801C", "A8172G", "C8296T", "G8317A", "A8323C", "G8554C", "T8646C"], "RT-p51": ["E122K", "V179I", "Q182S", "K277R", "Q334E", "G359S"], "RT-p66": ["E122K", "V179I", "Q182S", "K277R", "Q334E", "G359S", "R461K", "E492K"], "gp120": ["D4G", "K204L", "E262N", "V264I", "I281L", "L289F", "N327-", "T329K", "-377S", "N433T", "N434S", "K472R"], "gp41": ["Q290R"], "nef": ["R71T", "Y102H"], "p17": ["N26S", "I68L"], "p24": ["S178T", "D180E", "S225G"], "pro": ["H69Q"], "tat": ["P68S"], "vif": ["S116T", "Q136P", "K158R"], "vpu": ["V14A"]}, "labels": {"aa": "RT-p51: E122K, V179I, Q182S, K277R, Q334E, G359S; RT-p66: E122K, V179I, Q182S, K277R, Q334E, G359S, R461K, E492K; gp120: D4G, K204L, E262N, V264I, I281L, L289F, N327-, T329K, -377S, N433T, N434S, K472R; gp41: Q290R; nef: R71T, Y102H; p17: N26S, I68L; p24: S178T, D180E, S225G; pro: H69Q; tat: P68S; vif: S116T, Q136P, K158R; vpu: V14A"}}, "children": [{"name": "AY371156", "node_attrs": {"div": 0.12298999999999999, "accession": "AY371156", "clade_membership": {"value": "D"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_0175BA"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G378C", "A418G", "T486A", "A488G", "G491A", "A509G", "C516A", "G579A", "G603A", "C641A", "A660-", "A661-", "C662-", "A663-", "A664-", "A665-", "A666-", "G667-", "T668-", "A669-", "A670-", "G671-", "T728C", "C774A", "C788A", "C827T", "G944A", "T1137C", "T1143C", "-1452G", "T1454C", "G1475A", "A1493T", "G1498A", "A1500G", "A1543G", "A1772G", "A1841G", "G1846A", "C1853T", "C1865T", "A2273G", "A2314G", "A2572T", "A2677G", "C2694T", "C2720T", "A2755G", "A2839T", "A2845C", "G3093A", "A3163G", "G3166A", "G3221A", "A3226G", "A3292G", "A3385G", "C3394T", "A3595G", "T3602C", "G3694A", "A3706C", "A3791G", "G3792A", "C3814A", "C3908T", "T4006G", "A4107G", "G4148A", "C4159A", "T4234C", "T4412C", "A4525G", "A4558C", "C4569T", "C4667T", "T4674C", "A4684G", "A4687C", "C4757T", "C4786T", "A4820G", "A4849C", "C4890T", "T4976C", "T5043C", "C5125T", "G5143A", "A5198C", "A5213G", "T5214A", "T5251A", "T5292C", "A5336T", "C5445T", "T5466C", "G5481A", "A5537G", "A5545G", "A5689T", "G5718A", "G5725A", "G5729A", "G5747T", "T5843C", "C5859T", "T5887C", "A5916G", "A5917T", "A5954G", "G6001A", "G6029A", "T6034C", "G6076A", "C6165T", "-6170T", "T6171A", "-6175T", "T6178G", "-6179G", "-6180T", "-6181T", "A6185T", "A6186T", "-6187G", "A6188G", "T6193C", "-6198G", "-6201T", "C6202T", "A6223-", "-6224G", "-6225G", "A6230G", "G6277A", "T6306C", "G6317A", "A6329G", "C6336A", "-6339C", "A6489C", "A6525G", "G6572A", "G6611A", "T6637C", "A6641T", "A6647G", "C6649A", "C6667T", "A6668G", "A6669G", "A6695T", "C6729A", "A6730C", "C6752A", "T6808C", "C6824T", "T6826C", "C6827T", "T6828-", "T6829-", "A6833-", "C6835T", "A6837C", "C6840A", "A6854G", "T6860C", "A6881G", "C6885T", "C6951A", "A6952T", "T6953-", "G6954-", "G6955-", "A6960T", "-6968G", "-6969A", "-6972G", "-6973T", "-6974A", "-6975C", "-6976T", "-6977G", "-6978A", "-6998G", "C6999T", "-7006T", "G7026A", "A7032G", "G7072A", "A7154T", "A7155C", "A7157T", "-7160G", "T7162G", "G7190A", "G7197A", "A7531G", "T7579C", "A7590C", "G7668A", "G7717A", "A7820C", "C7825T", "T7865G", "C7921T", "C7941A", "A8111G", "G8117A", "G8170A", "T8182G", "A8193G", "C8213T", "T8214A", "T8278A", "G8280A", "G8304C", "G8393A", "A8456C", "C8488T", "A8516G", "A8531T", "G8534A", "G8537T", "T8543C", "G8643A"], "INT": ["S6D", "D13E", "K111R", "A265V"], "RT-p51": ["I60V", "A200I", "E248D", "E250D", "G333E", "M357I", "A376T", "T377M"], 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["I15V"], "rev": ["S8G", "T15A", "D88G", "G90E", "A108T", "S112A"], "tat": ["Q54R", "R57G", "D61G"], "vif": ["Y30H", "K33R", "K34T", "T67I", "E88A", "T180I", "S186N"], "vpr": ["I37E", "I63T", "Q77H"], "vpu": ["I28L", "D40N", "W41Q", "R47I", "V79A"]}, "labels": {"aa": "INT: S6D, D13E, K111R, A265V; RT-p51: I60V, A200I, E248D, E250D, G333E, M357I, A376T, T377M; RT-p66: I60V, A200I, E248D, E250D, G333E, M357I, A376T, T377M, I517L; gp120: A2V, K21S, K34E, E59K, T104I, -106Y, -107S, N108S, -109T, -110G, -111N, -112K, -116I, -117G, M126V, L151P, E155K, N159D, T161N, S162T, K212T, K224R, E240K, V243M, A253T, T263S, N265E, N272G, T292N, D293K, Q300K, L324F, L325Y, -326T, N328-, K334E, S336P, I343V, T344I, T365R, T366N, W367I, N368-, N369-, -372E, -374T, -375E, -376N, -381G, -382V, -383N, -384D, R391K, K393R, M406I, S435Y, S436E, N437-, D446N, R448K; gp41: N96T, R122K, S165T, I173L, F188V, P213Q, I270V, S293R, K297R, L304Y, C326Y, R334T; nef: E38D, A49V, E63D, E65D, V101I; p17: K28R, L51M, L61I, V82I, E90K, D102E, N109-, K110-, S111-, K112-; p2: N9-, A12T; p24: L15I; p6: T39A; p7: R11K, I12V, K26R; pro: I15V; rev: S8G, T15A, D88G, G90E, A108T, S112A; tat: Q54R, R57G, D61G; vif: Y30H, K33R, K34T, T67I, E88A, T180I, S186N; vpr: I37E, I63T, Q77H; vpu: I28L, D40N, W41Q, R47I, V79A"}}}, {"name": "AY371157", "node_attrs": {"div": 0.13482, "accession": "AY371157", "clade_membership": {"value": "D"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_4412HAL"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A379C", "A435C", "G438A", "G451A", "G452T", "G542A", "T549A", "A576G", "A585G", "C586T", "T635C", "G677A", "A704G", "A705G", "G709A", "G712A", "C713A", "T782C", "A881G", "C890T", "T992A", "A1079G", "C1091T", "T1100A", "A1112G", "A1145G", "C1178T", "A1268G", "A1343G", "A1349G", "T1362C", "G1450T", "T1451G", "-1452A", "C1453A", "A1588G", "G1589A", "T1616A", "G1670A", "T1730C", "A1736G", "A1743G", "G1794A", 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"A6767C", "G6774C", "A6779C", "C6790A", "A6799C", "T6808A", "A6809C", "C6838G", "C6843A", "T6849A", "A6856T", "C6857T", "A6899G", "A6900T", "G6910A", "C6938T", "A6947G", "-6956G", "-6957A", "-6958T", "A6962G", "T6964A", "-6968T", "-6969G", "-6972C", "-6980T", "-6981G", "-6982G", "-6983A", "-6984A", "-6985T", "A6987C", "A6992G", "G6996T", "-6998C", "-7006A", "A7012C", "C7015A", "A7065G", "A7095T", "C7124T", "A7129G", "T7147C", "A7155G", "A7157G", "-7160A", "A7161G", "-7163G", "-7164C", "-7165A", "C7171T", "C7174T", "A7186G", "G7239A", "G7594A", "A7678G", "C7684T", "A7701G", "A7796T", "A7818G", "A7887G", "T7888G", "A7918G", "C8146A", "G8173A", "T8200C", "G8208A", "G8219A", "G8267A", "T8279G", "T8293C", "A8294C", "T8369C", "A8378C", "T8440C", "T8444C", "A8458G", "T8483C", "A8490G", "C8494A", "A8522G", "T8568G", "T8569A", "A8577G", "G8598T", "C8609A", "A8701T", "G8717C", "A8719G"], "INT": ["K7E", "E11D", "V31I", "V32I", "I72V", "A91S", "T125A", "K156N", "E157Q", "R211K", "T218S", "N222H"], 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"N272D", "S302N", "A306T", "V322I", "C326G", "N331H"], "nef": ["V33A", "K39R", "T50A", "T51N", "L76E", "M79V", "D86Y", "H89Q", "Y120F", "Q125H", "N126S"], "p17": ["V7I", "Q15A", "I34L", "V35I", "R39N", "S72T", "T81A", "T84V", "N124D", "S125N", "S126K"], "p2": ["N9A", "S10G"], "p24": ["H87Q"], "p6": ["T22A"], "p7": ["K41R"], "rev": ["P100T", "V109I"], "tat": ["S24N", "K29R", "Q35L", "I39T", "T40K", "I45V"], "vif": ["V31I", "K36Q", "P47H", "V98I", "D134E", "R159K", "Q178H", "N190S"], "vpr": ["A6S", "E48D", "A55T"], "vpu": ["V5E", "R35K", "K38Q", "W41R", "E58D", "L82I"]}, "labels": {"aa": "INT: K7E, E11D, V31I, V32I, I72V, A91S, T125A, K156N, E157Q, R211K, T218S, N222H; RT-p51: V21I, E36D, T39K, D123E, V292I, R307K, R311K, V317A, E334D, E399D; RT-p66: V21I, E36D, T39K, D123E, V292I, R307K, R311K, V317A, E334D, E399D, A446S, E449D, P468S, D471N, S491A, S519N; gp120: N52D, I56L, E57V, E59D, T104S, D105-, -109P, -110N, -111I, -112T, S114N, -116S, -117A, -118N, -119N, -120I, -121S, -122I, -123V, -124K, E125K, I133T, V136I, V137L, R138K, K141Q, R150I, E155G, N159S, N160-, T161-, Y163N, N169T, A172V, V180I, S181T, F182S, K212R, T216A, E241V, I242M, I244-, I269V, N273S, R277K, H280N, T291A, D293Y, I294A, D297N, I305L, G307A, K309Q, N312K, Q315H, K319Q, I331K, K334N, P335S, N349V, T365G, N368D, S370G, -372W, S373T, -374W, -375N, -376T, -378A, -379V, T380P, -381N, -382E, K404R, Q414L, S435D, N437A, R462K; gp41: N133S, K172R, N195R, N272D, S302N, A306T, V322I, C326G, N331H; nef: V33A, K39R, T50A, T51N, L76E, M79V, D86Y, H89Q, Y120F, Q125H, N126S; p17: V7I, Q15A, I34L, V35I, R39N, S72T, T81A, T84V, N124D, S125N, S126K; p2: N9A, S10G; p24: H87Q; p6: T22A; p7: K41R; rev: P100T, V109I; tat: S24N, K29R, Q35L, I39T, T40K, I45V; vif: V31I, K36Q, P47H, V98I, D134E, R159K, Q178H, N190S; vpr: A6S, E48D, A55T; vpu: V5E, R35K, K38Q, W41R, E58D, L82I"}}}]}, {"name": "D_NODE_0000007", "node_attrs": {"div": 0.09673999999999998, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C641T", "A4820T", "A5282C", "T5951A", "A6013C", "G6733C", "G6936A", "-6956A", "-6958T", "T7156C", "A7161C", "G7508A"], "gp120": ["Y33T", "-106V", "M126-", "G361K", "E412A"], "gp41": ["V69I"], "vif": ["E78D"], "vpr": ["I60L"]}, "labels": {"aa": "gp120: Y33T, -106V, M126-, G361K, E412A; gp41: V69I; vif: E78D; vpr: I60L"}}, "children": [{"name": "D_NODE_0000008", "node_attrs": {"div": 0.10634999999999997, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "C537A", "G677A", "T731C", "T1052C", "C1220T", "T1304C", "G1508A", "A1657G", "T1978G", "A1984C", "A1988G", "C2080A", "A2161G", "C2326T", "A2413G", "G2470A", "C2499T", "G2548A", "A2551G", "A2557G", "T2605C", "A2610G", "C2720T", "G2872A", "T2873C", "A2937G", "A3224C", "T3644A", "A3794C", "C4078T", "C4180T", "C4534A", "A4611G", "A4686G", "C4803A", "T4912C", "A5056G", "G5167A", "G5437T", "A5444G", "T5472C", "G5558A", "G5668A", "G5700A", "A5709G", "G5729A", "G5730T", "A5828C", "A5952T", "A5981T", "A6142G", "-6170G", "-6175C", "-6179A", "-6180A", "-6181T", "A6186C", "G6346A", "C6441G", "G6547T", "A6565G", "A6581G", "A6689G", "A6734G", "C6800A", "G6823A", "C6824-", "C6919T", "G6935A", "T6953G", "-6957A", "T6988-", "-6994T", "G6995A", "-6998A", "T7024C", "T7087C", "A7089C", "-7160G", "-7163T", "A7164C", "G7666A", "G7668A", "G7717A", "C7797G", "C7921A", "C8080A", "T8112C", "G8170A", "A8184G", "G8255A", "T8279G", "A8792C", "A8859G", "G8929A", "T9040C"], "INT": ["K7Q", "D253E", "D279G"], "RT-p51": ["T135I", "K172R", "K281R", "T377L"], "RT-p66": ["T135I", "K172R", "K281R", "T377L"], "gp120": ["T33I", "T43S", "-117G", "E125-", "N160E", "A196G", "L231F", "I279V", "I294V", "K319R", "L324S", "T380N"], "gp41": ["R122K", "F206L", "I270T", "Q294R", "V318I", "C326G"], "nef": ["R196K"], "p1": ["N9S"], "p17": ["Q15E", "K18R"], "pro": ["D60E", "I64V"], "rev": ["L78I", "A108T"], "tat": ["A21P", "N23S"], "vif": ["I9V", "K34E", "H73N", "M109T", "K157R"], "vpu": ["V21I", "W41Y", "H74P"]}, "labels": {"aa": "INT: K7Q, D253E, D279G; RT-p51: T135I, K172R, K281R, T377L; RT-p66: T135I, K172R, K281R, T377L; gp120: T33I, T43S, -117G, E125-, N160E, A196G, L231F, I279V, I294V, K319R, L324S, T380N; gp41: R122K, F206L, I270T, Q294R, V318I, C326G; nef: R196K; p1: N9S; p17: Q15E, K18R; pro: D60E, I64V; rev: L78I, A108T; tat: A21P, N23S; vif: I9V, K34E, H73N, M109T, K157R; vpu: V21I, W41Y, H74P"}}, "children": [{"name": "AJ488927", "node_attrs": {"div": 0.13918999999999998, "accession": "AJ488927", "clade_membership": {"value": "D"}, "country": {"value": "TD"}, "date": {"value": 1999.0}, "Strain_name": {"value": "MN012"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G364A", "A368G", "C413G", "T506C", "C521T", "T539G", "A548T", "G562A", "A611G", "A613G", "G620A", "C623T", "G629A", "A647C", "A656G", "C774A", "A829G", "T884C", "C890T", "A914G", "T962C", "C978T", "G989A", "T992A", "A1025C", "G1078C", "T1271A", "A1278G", "A1279G", "T1344C", "A1404C", "G1405A", "C1406G", "-1452T", "A1486G", "A1495G", "G1498A", "T1501C", "T1547C", "A1580G", "A1664G", "T1752C", "T1791C", "G1794A", "A1819G", "A1907G", "G1978A", "A1982G", "C1986T", "T2095C", "A2125G", "G2156A", "A2164G", "T2209C", "A2215G", "A2311G", "G2380A", "G2462A", "T2494C", "C2503T", "G2518A", "A2705C", "A2707G", "A2727G", "A2734G", "C2735T", "C2822T", "C2829T", "G2837C", "A2839C", "A2840C", "A2842G", "A2884G", "A2929C", "A2986G", "A3088G", "G3098A", "A3107T", "A3115G", "G3169A", "G3205A", "A3226G", "G3316A", "T3566C", "T3602C", "A3644G", "A3666T", "A3767T", "A3787G", "T3805G", "T3967C", "T4006C", "A4051G", "C4141T", "T4150C", "A4228G", "G4267A", "C4428T", "G4549A", "A4567G", "C4569T", "G4581A", "A4653G", "T4655C", "T4665C", "T4680A", "G4696A", "T4703C", "C4754T", "T4868C", "G4878A", "T4932G", "A4956C", "T4976C", "T5028C", "G5086A", "T5091C", "A5119G", "A5159G", "A5191G", "C5282T", "T5292C", "C5294T", "C5351T", "G5359C", "T5437C", "T5446C", "A5461C", "A5509G", "A5601G", "C5611A", "G5650A", "A5659C", "C5679T", "A5702G", "G5711A", "T5869G", "A5884G", "T5929C", "A5951G", "A5957G", "C5974A", "G6001A", "A6045C", "A6065G", "G6105A", "G6106A", "C6163T", "G6167A", "-6172T", "-6174A", "A6185G", "C6186T", "-6187T", "-6189G", "A6191T", "T6193A", "A6194G", "C6196T", "-6198C", "C6199T", "-6201C", "C6202-", "A6223-", "A6229T", "G6268A", "T6271C", "A6285C", "G6303A", "A6318C", "A6329G", "A6335G", "C6336A", "G6339C", "G6379A", "G6434A", "C6483T", "G6575A", "C6580A", "A6639C", "G6664A", "G6710A", "A6731G", "C6752G", "T6766C", "G6774A", "A6779C", "A6801T", "A6812G", "G6818A", "T6825-", "T6826-", "C6827-", "T6828-", "T6829-", "-6830A", "-6831G", "-6832T", "A6834T", "C6835T", "C6840A", "T6849G", "G6871A", "G6910A", "C6922T", "A6936T", "C6938T", "G6948C", "G6953A", "G6954T", "G6955T", "A6959G", "A6960T", "G6963A", "-6968A", "-6969T", "-6970A", "-6972A", "-6973G", "-6974A", "-6975A", "-6976T", "-6977G", "-6978A", "-6979T", "-6980A", "-6981G", "-6982T", "-6983A", "-6984C", "-6985T", "A6986G", "-6988A", "-6993G", "G6996C", "C6999G", "G7004-", "A7005-", "A7007-", "C7008-", "A7009-", "T7039C", "G7061A", "T7075C", "T7106A", "T7114C", "G7145A", "T7150C", "T7153C", "C7170T", "T7192C", "G7197A", "C7201T", "G7206A", "G7253A", "G7256A", "G7276A", "G7288A", "G7310A", "G7311A", "G7316A", "A7322G", "G7331A", "G7339A", "G7360A", "G7441A", "G7483A", "G7550A", "G7558A", "G7568A", "A7572G", "G7599A", "G7653A", "G7662A", "G7663A", "A7678T", "G7688A", "G7691T", "A7701G", "A7733G", "A7744G", "A7747G", "A7801T", "A7818G", "G7850A", "T7876C", "A7921G", "A7989G", "A7992G", "G7998A", "G8001A", "C8051A", "A8098G", "C8106T", "C8120T", "G8191A", "G8245A", "T8268C", "A8314G", "A8323C", "A8363G", "A8378C", "A8405G", "A8456G", "C8471T", "C8488T", "A8490C", "C8491A", "C8494A", "A8525G", "G8540A", "C8590G", "G8595T", "A8656G", "G8682A", "A8746T", "G8807A", "C8828G", "A8847T", "C8868T", "A8885G", "G8905A", "T8914A", "A8930G", "C8967T", "C8971T", "C9148G", "G9153A"], "INT": ["D10E", "T125A", "T218I", "A265V", "R269K"], "RT-p51": ["V21I", "D123N", "A200T", "K204Q", "K211R", "L214F", "P243S", "T245I", "E248H", "K249Q", "Q278H", "G335S", "T338S"], "RT-p66": ["V21I", "D123N", "A200T", "K204Q", "K211R", "L214F", "P243S", "T245I", "E248H", "K249Q", "Q278H", "G335S", "T338S", "S491P", "I517V", "Q524L", "K558*"], "gp120": ["N5K", "I33V", "T35A", "N64T", "N71D", "W84*", "D105N", "-107N", "-111N", "-112A", "N113T", "S114V", "-116*", "-118T", "-119T", "-120D", "-121M", "E144A", "R150K", "E155A", "N159E", "T161N", "G194S", "P210L", "E241K", "E262T", "G286R", "Q300E", "G307E", "K309Q", "Q316M", "K320E", "G322R", "L325I", "N327-", "T329K", "I331D", "K361I", "W367I", "N369V", "S370N", "-372I", "-374T", "-375E", "-376N", "-377S", "-378T", "-379R", "T385-", "G403R", "S418T", "G431S", "S435N", "N437S", "T439I", "R448K", "W451*", "G467R", "V468I"], "gp41": ["G3K", "G5R", "M7V", "G10R", "M19I", "W60*", "G83R", "W85*", "G89R", "K90R", "W99*", "W117*", "W120*", "E125D", "G129S", "V130L", "N133S", "K144E", "K172R", "G183S", "Q229R", "D230G", "G232D", "R233K", "A268V", "N272D", "L273F", "V322A"], "nef": ["A49V", "T50H", "T51N", "A83G", "V85L", "K105R", "V114I", "Y135F", "N162K", "M173V", "P176S", "R188K", "F191Y"], "p17": ["G10E", "N26K", "I68M", "R76K", "I92M", "E93G"], "p24": ["L15I", "N33S", "H87Q", "E98D", "G116A", "D180E", "N183G", "S225Q"], "p6": ["S25P", "N47S"], "p7": ["K7R", "K10R", "R11K", "I12T"], "pro": ["N37D", "I62V", "P63L"], "rev": ["A68E", "N84D", "P91L", "E115K"], "tat": ["S24P", "K29Q", "I45V", "P68S"], "vif": ["S23G", "Y27H", "S32T", "G37E", "V98I", "S116A", "I124L", "R167K", "Q178R"], "vpr": ["T19A", "I63T", "R85P"], "vpu": ["Q2K", "A15T", "I18L", "K32R", "R35K"]}, "labels": {"aa": "INT: D10E, T125A, T218I, A265V, R269K; RT-p51: V21I, D123N, A200T, K204Q, K211R, L214F, P243S, T245I, E248H, K249Q, Q278H, G335S, T338S; RT-p66: V21I, D123N, A200T, K204Q, K211R, L214F, P243S, T245I, E248H, K249Q, Q278H, G335S, T338S, S491P, I517V, Q524L, K558*; gp120: N5K, I33V, T35A, N64T, N71D, W84*, D105N, -107N, -111N, -112A, N113T, S114V, -116*, -118T, -119T, -120D, -121M, E144A, R150K, E155A, N159E, T161N, G194S, P210L, E241K, E262T, G286R, Q300E, G307E, K309Q, Q316M, K320E, G322R, L325I, N327-, T329K, I331D, K361I, W367I, N369V, S370N, -372I, -374T, -375E, -376N, -377S, -378T, -379R, T385-, G403R, S418T, G431S, S435N, N437S, T439I, R448K, W451*, G467R, V468I; gp41: G3K, G5R, M7V, G10R, M19I, W60*, G83R, W85*, G89R, K90R, W99*, W117*, W120*, E125D, G129S, V130L, N133S, K144E, K172R, G183S, Q229R, D230G, G232D, R233K, A268V, N272D, L273F, V322A; nef: A49V, T50H, T51N, A83G, V85L, K105R, V114I, Y135F, N162K, M173V, P176S, R188K, F191Y; p17: G10E, N26K, I68M, R76K, I92M, E93G; p24: L15I, N33S, H87Q, E98D, G116A, D180E, N183G, S225Q; p6: S25P, N47S; p7: K7R, K10R, R11K, I12T; pro: N37D, I62V, P63L; rev: A68E, N84D, P91L, E115K; tat: S24P, K29Q, I45V, P68S; vif: S23G, Y27H, S32T, G37E, V98I, S116A, I124L, R167K, Q178R; vpr: T19A, I63T, R85P; vpu: Q2K, A15T, I18L, K32R, R35K"}}}, {"name": "AJ488926", "node_attrs": {"div": 0.13119999999999998, "accession": "AJ488926", "clade_membership": {"value": "D"}, "country": {"value": "TD"}, "date": {"value": 1999.0}, "Strain_name": {"value": "MN011"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A380C", "G394A", "G424A", "A530G", "T575C", "G607A", "G612C", "C688T", "G690C", "C691T", "G712A", "A725C", "T824C", "A857C", "C875T", "C926A", "A1025G", "A1034G", "C1103T", "G1340A", "A1349T", "T1358C", "G1419A", "T1422C", "-1452G", "G1488A", "G1489A", "T1610G", "G1673A", "C1676T", "G1840A", "A1841G", "T1854A", "T1873C", "G1972A", "A2007C", "A2012G", "A2014G", "G2422A", "G2426A", "A2460C", "G2473A", "C2488T", "T2520C", "A2563G", "G2602T", "T2608C", "T2671C", "A2693G", "A2695C", "A2704G", "G2833A", "A2920G", "G2957A", "A2972G", "A3037G", "G3085A", "G3166A", "G3168A", "C3175T", "G3221T", "C3266T", "A3400G", "G3487A", "A3595G", "G3631A", "C3688A", "C3908A", "A3986C", "G4109A", "T4110C", "A4111G", "C4132A", "G4148A", "C4192T", "G4263A", "A4522G", "T4679G", "T4769A", "C4786A", "A4811G", "G4862A", "T4914C", "T4967G", "G5049A", "C5050A", "T5162C", "A5305G", "C5306A", "A5335G", "C5351A", "A5355C", "C5356A", "T5357G", "C5358A", "C5361A", "A5362C", "G5363A", "A5364G", "G5365C", "T5382C", "C5398T", "G5430A", "A5462T", "G5463T", "G5496A", "G5533A", "C5536A", "G5538A", "A5545G", "C5549T", "C5563A", "T5577G", "T5578G", "C5585A", "A5594G", "A5607G", "T5614C", "T5648C", "G5718A", "G5747T", "G5781T", "G5784A", "A5805C", "A5840C", "C5846T", "T5866G", "A5867G", "T5871C", "T5887C", "A5902G", "A5918G", "A6009G", "A6025G", "C6151T", "A6157G", "-6172C", "-6174G", "T6178C", "A6182G", "C6183T", "-6187A", "A6188G", "-6189T", "C6190G", "A6192G", "G6195A", "-6198G", "-6201G", "-6221T", "-6222T", "-6224G", "-6225G", "A6229G", "A6322G", "A6324G", "A6326G", "A6332G", "T6334G", "T6337A", "A6442G", "C6481T", "C6487T", "A6489C", "A6508G", "G6550A", "G6553A", "G6611A", "A6638G", "G6644A", "C6673T", "G6715A", "C6733T", "C6745T", "A6776G", "A6800G", "A6821G", "A6822C", "-6824G", "T6825C", "A6837C", "A6842C", "C6843A", "T6883A", "A6944G", "A6967T", "A6971-", "A6986-", "A6987-", "T6991C", "-6993A", "A6997T", "A7001G", "-7006T", "T7150A", "A7151-", "A7152-", "T7153-", "A7154-", "A7155-", "C7156-", "G7177A", "A7275G", "T7429C", "A7508C", "A7590C", "C7597T", "G7628A", "G7642A", "T7675A", "A7732G", "G7791A", "A7799C", "T7912C", "C7939A", "C8062T", "G8079A", "G8117A", "C8146T", "T8203C", "A8216G", "G8280C", "G8288A", "T8320A", "G8329A", "G8335A", "T8426G", "A8458G", "A8530G", "A8531T", "A8584T", "A8647G", "C8648G", "T8789C", "G8848A", "T8860G", "G8864C", "G8875A", "T8883C", "T8972C", "G8991A", "C9012T", "T9108C"], "INT": ["L45I", "K71Q", "V112T", "S119R", "G163E"], "RT-p51": ["V111I", "E122A", "I142T", "E169D", "A288T", "I293V", "M357I", "R358K", "A376S", "I435M"], "RT-p66": ["V111I", "E122A", "I142T", "E169D", "A288T", "I293V", "M357I", "R358K", "A376S", "I435M"], "gp120": ["D4E", "N5D", "L6S", "T22A", "N52S", "-107S", "-109N", "-110T", "-111V", "-112S", "-116L", "-118E", "-119M", "I156M", "D157G", "N158D", "K212T", "A253T", "V264I", "D293N", "T308A", "Q316E", "K323A", "S324A", "N328T", "T330Q", "T365I", "W367G", "S373-", "-379N", "-381S", "-382T", "-383D", "-384D", "N432K", "N433-", "S435A", "K474R"], "gp41": ["I69L", "N96T", "D109N", "S163N", "N166Q", "R259Q", "N305D", "G326A", "V329I", "F340L"], "nef": ["D28E", "K39R", "E63G", "Y81F", "Y102W", "C169N", "M173G", "E174D", "R178K"], "p17": ["E15D", "R20Q", "R30K", "R91K", "E93Q", "A118V", "A119L", "S126N", "Q130H"], "p2": ["N9S"], "p24": ["V230I"], "p6": ["T39A"], "p7": ["G8N", "D48E"], "pro": ["I15V", "L19Q", "K70T", "I72V"], "rev": ["D7E", "S8N", "L12F", "F21W", "Q24K", "P31T", "P72S", "G90E", "P100S"], "tat": ["P21S", "K29I", "G53R", "Q54K", "R57G", "P58L", "Q63K", "P68A", "P70Q", "P77H"], "vif": ["D61E", "T67K", "Y110H", "H127Q", "A155K"], "vpr": ["L68M", "Q77R", "T84Q", "Q86T", "R87A", "S93P"], "vpu": ["S3P", "V14A", "R47I", "E58D", "E66D", "D78A"]}, "labels": {"aa": "INT: L45I, K71Q, V112T, S119R, G163E; RT-p51: V111I, E122A, I142T, E169D, A288T, I293V, M357I, R358K, A376S, I435M; RT-p66: V111I, E122A, I142T, E169D, A288T, I293V, M357I, R358K, A376S, I435M; gp120: D4E, N5D, L6S, T22A, N52S, -107S, -109N, -110T, -111V, -112S, -116L, -118E, -119M, I156M, D157G, N158D, K212T, A253T, V264I, D293N, T308A, Q316E, K323A, S324A, N328T, T330Q, T365I, W367G, S373-, -379N, -381S, -382T, -383D, -384D, N432K, N433-, S435A, K474R; gp41: I69L, N96T, D109N, S163N, N166Q, R259Q, N305D, G326A, V329I, F340L; nef: D28E, K39R, E63G, Y81F, Y102W, C169N, M173G, E174D, R178K; p17: E15D, R20Q, R30K, R91K, E93Q, A118V, A119L, S126N, Q130H; p2: N9S; p24: V230I; p6: T39A; p7: G8N, D48E; pro: I15V, L19Q, K70T, I72V; rev: D7E, S8N, L12F, F21W, Q24K, P31T, P72S, G90E, P100S; tat: P21S, K29I, G53R, Q54K, R57G, P58L, Q63K, P68A, P70Q, P77H; vif: D61E, T67K, Y110H, H127Q, A155K; vpr: L68M, Q77R, T84Q, Q86T, R87A, S93P; vpu: S3P, V14A, R47I, E58D, E66D, D78A"}}}]}, {"name": "D_NODE_0000009", "node_attrs": {"div": 0.10946999999999998, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G378C", "A387T", "A388C", "G424A", "T571A", "T575C", "G608A", "C626A", "G1078C", "A1157C", "C1175A", "C1253T", "T1421A", "C1447A", "A1448C", "G1450A", "C1453-", "T1454-", "T1501C", "A1771G", "A1772G", "G1778A", "T1790C", "T2062C", "G2380A", "A2569G", "A2611G", "A2920G", "A2972G", "A2984G", "G3046A", "G3080A", "G3098A", "G3162A", "A3398G", "G3442A", "C3497T", "G3499A", "T3566C", "G3756A", "C3773T", "G3781A", "G4057A", "G4267A", "A4625G", "G4677A", "A4692G", "A4693C", "T4943C", "T4991C", "A5058C", "G5267A", "G5359C", "G5430A", "A5462G", "T5483A", "C5563A", "T5578C", "C5688T", "G5717A", "T5739C", "C5826T", "G5839A", "T5948G", "A5952C", "A5957G", "A6024T", "C6026T", "A6065G", "A6173-", "A6176-", "A6177-", "-6189T", "C6190G", "-6221A", "G6260A", "G6263T", "G6268A", "T6395A", "C6396A", "A6442G", "C6496T", "A6500T", "A6525G", "G6583A", "C6612T", "A6661G", "A6686-", "G6687-", "T6688-", "T6690-", "A6691C", "C6692A", "A6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6731G", "C6752-", "G6773A", "A6775-", "A6781C", "G6802A", "T6808A", "C6838A", "C6925T", "G6935T", "-6973T", "-6979A", "T7003G", "T7130C", "G7146T", "A7234G", "C7250T", "G7256A", "A7300G", "G7373A", "G7375A", "G7594A", "C7640A", "C7939A", "A7977G", "C8146A", "A8264G", "G8288A", "C8491A", "T8747C", "A8794G", "C8868A"], "INT": ["R284G"], "RT-p51": ["I293V", "K297E", "V329I", "G335S", "R356K", "I435V"], "RT-p66": ["I293V", "K297E", "V329I", "G335S", "R356K", "I435V", "P468S", "S491P", "S554N"], "gp120": ["S32A", "T35A", "E57I", "N71D", "V137L", "S162R", "T216S", "K224R", "V243I", "A253V", "R277-", "Q300-", "G307S", "K309-", "-378N", "-381G", "G431V", "V468I"], "gp41": ["V24I", "Q113N", "E225G", "I321V", "V329I"], "nef": ["D24E", "K151R", "C169S", "P176T"], "p17": ["K18S", "R30K"], "p2": ["T8N"], "p24": ["G116A"], "p6": ["K31R"], "p7": ["I12T"], "rev": ["P31T", "P100T"], "tat": ["K29R", "L36H", "Q63K", "P77H"], "vif": ["V31I", "K36A", "K158Q"], "vpr": ["A55T", "R85P"], "vpu": ["R37K"]}, "labels": {"aa": "INT: R284G; RT-p51: I293V, K297E, V329I, G335S, R356K, I435V; RT-p66: I293V, K297E, V329I, G335S, R356K, I435V, P468S, S491P, S554N; gp120: S32A, T35A, E57I, N71D, V137L, S162R, T216S, K224R, V243I, A253V, R277-, Q300-, G307S, K309-, -378N, -381G, G431V, V468I; gp41: V24I, Q113N, E225G, I321V, V329I; nef: D24E, K151R, C169S, P176T; p17: K18S, R30K; p2: T8N; p24: G116A; p6: K31R; p7: I12T; rev: P31T, P100T; tat: K29R, L36H, Q63K, P77H; vif: V31I, K36A, K158Q; vpr: A55T, R85P; vpu: R37K"}}, "children": [{"name": "JX140670", "node_attrs": {"div": 0.14922, "accession": "JX140670", "clade_membership": {"value": "D"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "DEMD10CM009"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C200T", "A256-", "A418G", "T495G", "T506C", "G519A", "C528G", "T536C", "C537A", "T560G", "G562T", "T570C", "A587T", "G603A", "G614T", "G629A", "T641A", "C662G", "A665G", "G667T", "A676G", "C679A", "C681-", "A682-", "G683-", "C684G", "A685C", "T731C", "A818C", "G821A", "A829G", "C830T", "A833C", "C879G", "A880C", "A887G", "C893T", "C926A", "T949C", "C950T", "C978T", "T1043C", "T1052C", "T1064G", "A1088T", "C1091T", "A1115C", "A1142C", "C1245T", "G1436A", "G1458A", "A1461G", "A1463G", "C1491T", "G1496A", "A1543G", "A1551C", "A1567G", "A1642G", "A1643G", "G1673A", "C1750T", "G1766A", "G1779A", "A1781C", "C1782A", "T1783A", "T1785G", "C1826T", "A1835G", "A1907G", "A1918G", "G2117A", "A2242G", "C2263T", "T2365C", "A2419G", "G2426A", "C2452A", "G2459A", "T2464A", "G2470A", "T2479A", "T2581C", "A2614G", "A2677G", "A2705G", "A2713G", "A2764G", "A2845T", "C2857A", "C2899T", "C2909G", "A2918C", "G2926A", "A2929C", "A3010G", "G3019A", "G3027A", "T3109C", "T3118C", "G3142A", "A3145G", "G3169A", "A3192G", "A3226G", "G3238C", "T3303G", "G3307A", "G3316A", "A3391T", "T3399C", "A3454G", "T3492C", "G3523A", "T3550C", "C3691T", "C3751T", "G3770A", "T3778C", "A3802G", "A3816G", "T3850C", "G3869A", "T3889C", "A3907G", "A3985G", "C4076A", "G4148A", "T4177G", "C4192T", "G4407A", "C4534T", "G4549A", "A4555G", "G4573A", "A4642G", "C4643G", "C4645T", "T4665C", "T4679C", "G4689A", "G4774A", "C4786T", "A4787C", "T4793C", "G4829A", "G4835A", "G4856A", "C4937A", "T4988G", "G5049A", "C5050A", "T5152C", "A5159G", "G5189A", "A5191G", "A5248C", "T5281C", "C5282T", "C5303T", "C5356T", "T5451C", "A5483G", "T5484G", "A5494T", "G5496A", "G5546A", "C5554A", "G5558A", "A5564C", "G5565A", "G5589T", "T5614C", "T5626A", "A5628T", "G5629T", "G5650A", "A5707C", "A5709G", "G5712A", "C5731T", "C5756A", "T5778C", "A5800G", "A5805C", "A5840T", "A6009G", "G6023A", "A6044C", "A6045C", "C6046T", "G6076A", "T6169A", "T6171-", "T6178-", "A6185C", "-6187C", "A6188C", "-6198C", "A6200C", "-6201A", "C6202G", "-6203T", "-6204C", "-6205G", "-6206G", "-6207T", "-6208T", "-6209A", "-6210A", "-6211C", "-6212A", "-6213C", "-6214C", "-6215A", "-6216C", "-6217C", "-6218G", "-6219A", "-6220C", "-6222C", "A6226-", "A6229C", "A6234G", "A6262G", "A6266C", "G6267A", "A6278C", "C6281A", "G6284A", "T6295C", "G6303A", "C6305A", "T6307G", "A6311C", "A6313G", "A6324G", "T6328G", "A6333G", "G6339A", "T6340G", "G6379A", "A6394G", "A6396G", "A6464C", "G6526A", "C6599A", "C6601T", "C6619T", "C6632T", "T6637G", "A6638G", "T6652C", "T6655G", "A6659G", "T6660A", "C6670T", "A6683-", "G6684-", "A6685-", "-6690G", "G6712A", "A6714G", "G6716T", "-6752A", "A6754C", "C6758T", "A6767G", "G6774-", "A6776-", "C6781T", "A6799T", "A6809G", "G6810A", "T6849A", "T6850A", "A6854G", "A6856G", "T6860G", "C6862T", "T6863G", "A6887G", "T6898C", "T6928C", "A6937C", "A6947G", "A6949C", "-6957T", "A6962G", "T6964C", "-6968A", "-6969G", "-6970G", "-6972A", "-6974G", "-6975A", "-6976C", "-6977A", "-6978C", "-6980A", "-6981G", "-6982G", "-6983A", "-6984C", "-6985T", "A6989-", "A6990-", "T6991-", "A6992-", "-6998A", "A7001G", "A7002G", "-7006T", "C7014-", "C7015-", "A7016-", "C7084T", "G7088A", "A7113C", "A7115G", "T7117G", "C7127A", "A7136G", "G7137T", "G7143A", "T7144A", "A7154T", "A7155C", "C7156G", "A7158G", "-7160C", "-7163G", "T7165G", "A7167C", "A7237G", "C7264A", "T7313C", "A7315G", "G7477A", "A7494T", "A7552G", "C7597T", "G7628A", "A7640G", "A7641G", "A7678C", "T7681G", "T7690G", "A7714C", "A7744G", "A7799C", "A7832G", "T7864C", "G7882A", "A7885G", "G7896A", "T7912C", "C7913T", "C8080A", "T8112C", "G8117A", "A8184G", "C8213T", "A8216G", "G8245A", "T8265C", "A8271T", "G8280T", "A8294C", "A8299C", "G8329A", "T8375A", "A8402G", "T8414G", "A8490C", "T8492G", "C8503A", "A8636T", "A8657G", "T8666A", "G8753A", "G8762A", "T8789C", "A8806G", "A8816G", "A8827C", "A8844G", "A8885G", "G8893A", "T8897C", "C8921T", "A8924G", "G8931C", "G8942A", "G9016-", "T9019G", "G9095A", "T9098C", "C9129T"], "INT": ["K14R", "V32I", "L101I", "R211K"], "RT-p51": ["V8I", "V111I", "E122K", "D123E", "A200T", "K204E", "E250D", "P272A", "K275Q", "Q278H", "R311K", "K366R", "T377M", "M403R", "E432D", "V435A"], "RT-p66": ["V8I", "V111I", "E122K", "D123E", "A200T", "K204E", "E250D", "P272A", "K275Q", "Q278H", "R311K", "K366R", "T377M", "M403R", "E432D", "V435A", "V466A", "I517L", "V559I"], "gp120": ["N52S", "N64P", "D105E", "V106T", "-107H", "-109T", "-110T", "-111D", "-112T", "N113D", "S114M", "S115R", "E125-", "K127-", "V136M", "R138Q", "K142Q", "Q143K", "E144K", "R150K", "L151M", "I153L", "D157G", "N158K", "N160S", "R162K", "K204Q", "L249I", "L260F", "N261K", "I269E", "-277S", "Q287R", "A288S", "-300N", "H302Y", "I305V", "S307T", "T308N", "Q315H", "K319E", "N328K", "I332K", "K334E", "S336A", "S337A", "T345A", "K361Y", "T365G", "N368I", "S370G", "-372R", "S373N", "-374D", "-375T", "-376R", "-377T", "-379G", "-384D", "T387I", "I388-", "A412K", "N420T", "I421V", "L425I", "R428V", "G430E", "N434S", "S436P", "N437E", "E438A"], "gp41": ["Q64L", "D109N", "N113G", "E125D", "N126K", "E137D", "S165T", "N166Q", "I177V", "M193I", "R198K", "I270T", "Q294R", "L304F", "N305D", "V321A", "Q323L", "C326F", "N331H", "F340L"], "nef": ["I20M", "T50Q", "A54D", "E64D", "E98D", "D108E", "E155G", "N162T", "M168V", "R184K", "E197Q"], "p1": ["K4R"], "p17": ["K28R", "S54A", "G62S", "Q65E", "R76I", "F79H", "E90K", "E93D", "D102E", "N109K", "S111I", "K114R", "A115E", "Q116A", "Q117-"], "p2": ["M4I", "S10-", "A12T", "I13V"], "p24": ["E29D", "N33S", "Q50A", "I73T", "E128D"], "p6": ["P11L", "A12E", "-23L", "P24S", "S25-", "E34N", "L35K", "Y36D", "T39A"], "p7": ["P9S", "K26R", "K34R"], "pro": ["L10F", "I13V", "N37D"], "rev": ["D11N", "R17Q", "S25I", "L78I", "G90E"], "tat": ["H36R", "T40S", "R57K", "Q60K", "K63T", "E71D"], "vif": ["N19R", "T20I", "Y27H", "A35T", "R63K", "T67I", "D117E", "D134E", "A155K", "M189T"], "vpr": ["T19A", "E29K", "E48D", "T84I"], "vpu": ["S3P", "L7I", "A8S", "A15T", "K34Q", "A50E", "M65V", "E66D", "D78I"]}, "labels": {"aa": "INT: K14R, V32I, L101I, R211K; RT-p51: V8I, V111I, E122K, D123E, A200T, K204E, E250D, P272A, K275Q, Q278H, R311K, K366R, T377M, M403R, E432D, V435A; RT-p66: V8I, V111I, E122K, D123E, A200T, K204E, E250D, P272A, K275Q, Q278H, R311K, K366R, T377M, M403R, E432D, V435A, V466A, I517L, V559I; gp120: N52S, N64P, D105E, V106T, -107H, -109T, -110T, -111D, -112T, N113D, S114M, S115R, E125-, K127-, V136M, R138Q, K142Q, Q143K, E144K, R150K, L151M, I153L, D157G, N158K, N160S, R162K, K204Q, L249I, L260F, N261K, I269E, -277S, Q287R, A288S, -300N, H302Y, I305V, S307T, T308N, Q315H, K319E, N328K, I332K, K334E, S336A, S337A, T345A, K361Y, T365G, N368I, S370G, -372R, S373N, -374D, -375T, -376R, -377T, -379G, -384D, T387I, I388-, A412K, N420T, I421V, L425I, R428V, G430E, N434S, S436P, N437E, E438A; gp41: Q64L, D109N, N113G, E125D, N126K, E137D, S165T, N166Q, I177V, M193I, R198K, I270T, Q294R, L304F, N305D, V321A, Q323L, C326F, N331H, F340L; nef: I20M, T50Q, A54D, E64D, E98D, D108E, E155G, N162T, M168V, R184K, E197Q; p1: K4R; p17: K28R, S54A, G62S, Q65E, R76I, F79H, E90K, E93D, D102E, N109K, S111I, K114R, A115E, Q116A, Q117-; p2: M4I, S10-, A12T, I13V; p24: E29D, N33S, Q50A, I73T, E128D; p6: P11L, A12E, -23L, P24S, S25-, E34N, L35K, Y36D, T39A; p7: P9S, K26R, K34R; pro: L10F, I13V, N37D; rev: D11N, R17Q, S25I, L78I, G90E; tat: H36R, T40S, R57K, Q60K, K63T, E71D; vif: N19R, T20I, Y27H, A35T, R63K, T67I, D117E, D134E, A155K, M189T; vpr: T19A, E29K, E48D, T84I; vpu: S3P, L7I, A8S, A15T, K34Q, A50E, M65V, E66D, D78I"}}}, {"name": "MN153488", "node_attrs": {"div": 0.14864999999999998, "accession": "MN153488", "clade_membership": {"value": "D"}, "country": {"value": "CM"}, "date": {"value": 2008.0}, "Strain_name": {"value": "08CMBDSH25"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A435C", "T466A", "A513T", "G520C", "A530T", "G546A", "A548T", "C558T", "A569G", "G579C", "G582T", "A585G", "C586T", "A587G", "T602G", "A604C", "C623T", "T635C", "A666T", "G677A", "A706G", "G752A", "C774A", "C794T", "T992G", "G1002A", "G1019A", "T1094C", "A1101G", "A1112G", "G1139A", "T1187C", "A1217G", "C1229T", "T1344A", "A1404G", "C1440A", "A1441G", "A1486G", "G1487A", "G1488A", "C1490T", "C1517T", "A1656C", "G1670A", "C1676T", "G1687A", "C1692A", "A1736G", "T1754G", "T1791A", "G1794A", "A1832T", "A1841G", "G1846A", "C1853A", "A1879G", "A1926G", "G1972A", "C2044T", "T2086C", "A2215G", "T2302A", "T2323C", "A2329G", "T2338C", "G2341A", "C2452T", "G2686A", "A2693G", "A2698G", "A2727G", "A2845G", "G2847A", "G2902A", "G2968A", "A2977G", "G3004A", "T3022C", "T3121C", "C3178T", "A3196G", "T3225C", "G3388A", "G3431T", "A3532G", "A3643C", "T3644A", "A3718G", "G3796A", "T3805G", "C3814T", "C3922A", "A3934G", "T3943C", "T3970C", "A3989G", "T4085C", "A4178G", "C4318A", "T4321C", "G4351A", "C4569T", "G4581A", "T4678A", "T4679A", "G4695A", "C4726A", "G4751A", "G4778A", "T4910C", "C5018A", "G5137A", "A5155G", "T5170C", "A5213G", "A5215G", "G5225A", "T5292C", "C5303A", "C5311T", "A5312G", "T5314C", "A5360T", "C5412T", "G5437C", "T5475C", "G5538A", "A5586G", "A5612C", "T5621A", "G5652A", "C5653A", "A5659C", "A5685C", "G5711A", "A5746G", "G5747A", "G5781T", "G5784A", "A5794C", "C5795A", "C5851A", "A5853G", "G5864A", "A5867C", "T5869G", "T5871C", "G5872A", "A5884G", "A5918G", "C5920T", "G6023T", "G6029A", "A6060G", "C6097T", "C6110G", "C6139A", "C6151T", "-6170G", "-6179G", "-6180T", "-6181G", "A6182T", "T6184C", "-6187A", "A6188G", "A6191G", "T6193C", "G6195A", "-6198G", "-6201G", "-6222A", "-6224A", "-6225G", "A6230C", "A6251G", "A6275G", "A6285C", "T6287C", "A6292T", "A6311G", "A6329C", "C6336G", "T6337G", "T6340C", "C6364T", "A6388T", "G6434-", "A6461C", "A6462C", "G6463A", "C6477A", "C6481T", "C6483A", "G6532A", "T6551A", "G6566T", "G6605A", "G6628A", "G6631A", "A6641G", "A6685G", "A6689-", "A6703G", "C6713A", "C6717T", "C6719T", "C6721T", "T6722G", "A6723C", "T6724A", "A6732G", "-6775T", "C6777A", "A6779G", "A6811T", "G6818A", "A6821G", "C6835T", "A6837T", "A6839T", "A6856C", "C6857T", "A6868G", "A6884G", "A6891T", "G6906C", "T6935C", "C6938T", "G6948C", "-6957A", "G6963A", "A6967T", "-6972G", "-6974A", "-6975C", "-6976A", "-6977G", "-6978G", "-6993C", "-6994A", "-6998T", "C6999T", "A7001C", "A7005G", "-7006A", "C7008A", "A7009T", "T7047G", "C7078T", "A7089C", "C7094G", "A7095T", "A7101G", "T7106G", "C7107A", "C7124T", "G7145A", "T7147G", "A7148G", "A7149G", "T7159G", "-7160T", "-7163A", "T7217C", "A7219G", "A7238G", "A7275G", "T7321C", "T7386C", "G7441A", "T7444G", "G7459A", "G7519A", "A7542G", "T7565G", "T7567A", "T7604A", "G7608C", "G7620A", "A7621G", "C7625G", "A7629C", "G7631A", "T7633A", "G7642T", "C7702A", "A7706C", "A7721G", "A7734C", "C7770A", "A7790G", "G7791A", "C7797G", "A7801C", "C7843G", "G7915C", "A7918G", "A7984C", "A7992G", "G7998A", "C7999T", "G8001C", "G8014A", "A8032G", "C8033A", "C8051A", "A8093C", "G8105A", "C8119A", "G8173A", "G8255A", "A8262C", "G8276A", "C8277T", "A8323T", "T8366G", "T8369C", "A8378G", "G8412C", "A8413C", "A8455C", "A8458G", "A8491G", "C8494A", "C8500A", "T8501G", "A8516G", "A8531G", "G8588A", "G8643A", "A8647G", "C8648G", "A8657C", "C8687T", "C8740T", "G8772C", "T8786A", "A8793G", "A8801G", "G8822A", "T8843C", "G8848A", "G8852A", "C8869A", "G8888A", "A8909C", "A8918G", "A8922G", "A8923C", "T8939C", "C8960T", "C8966A", "G8968A", "C8971T", "G9030T", "C9072T"], "INT": ["D10E", "I72V", "T125A", "I135V", "F181L", "A265V", "R269K"], "RT-p51": ["K211R", "S251N"], "RT-p66": ["K211R", "S251N", "A446S", "E516D"], "gp120": ["D4N", "N5Q", "L6S", "T22A", "I57L", "E59K", "K69R", "Q86E", "-107K", "N108V", "-109D", "-123K", "-124R", "-126L", "I133V", "V136I", "K141E", "E144A", "Y145H", "I153V", "N159H", "T161R", "G194-", "K203P", "T208K", "P210Q", "L233M", "A238S", "D251N", "E262K", "T263A", "I269M", "S278-", "I279-", "T308K", "-309D", "K319S", "G322R", "K323E", "N328I", "T329S", "K334N", "P335S", "T344A", "H346L", "G351A", "K361Q", "S370N", "-372S", "S373T", "-374G", "-379N", "-382L", "-383Q", "-384G", "T385N", "M398R", "Q414V", "K416R", "S418E", "V431M", "N432G", "S435K", "R462G", "K474R"], "gp41": ["V28A", "Q80R", "S88A", "S101T", "S102T", "R106K", "L108V", "D109A", "D110K", "N133K", "I135L", "I140V", "K144T", "A156E", "S163D", "D230G", "G232D", "R233T", "L244I", "I264L", "A268T", "N272E", "V318I", "E320A", "A325I"], "nef": ["S8R", "E24P", "E38A", "K39R", "T50S", "T51N", "A53E", "V101I", "Y102W", "K105N", "T133I", "E144Q", "R151G", "S169N", "T176K", "K194A"], "p1": ["N9H"], "p17": ["I34L", "F44Y", "I60L", "G62A", "Q65H", "I68L", "G71S", "L75F", "F79Y", "V82L", "A83S", "T84V", "H89Q", "E90A", "S111C", "N124S"], "p2": ["Q6R", "S10A", "A12-"], "p24": ["L15I", "H87Q", "V91I", "M96I", "I124V", "L205M", "S225G"], "p6": ["S3N", "P5T", "L38I"], "p7": ["K7R", "G8S"], "pro": ["T12S", "I15V", "L19I", "K43R"], "rev": ["S8N", "T15A", "Q24R", "Q51Y", "G56S", "T62D", "A68E", "N82T", "S86N", "P91T", "V109I"], "tat": ["A21P", "D61G"], "vif": ["I31K", "G37R", "P47H", "R184K", "N190S"], "vpr": ["I37V", "G41S", "I63T", "L67I", "I70V"], "vpu": ["Q2P", "V5E", "L16I", "I18L", "R35K", "R47E", "E58D", "T63Q", "D78N", "L82M"]}, "labels": {"aa": "INT: D10E, I72V, T125A, I135V, F181L, A265V, R269K; RT-p51: K211R, S251N; RT-p66: K211R, S251N, A446S, E516D; gp120: D4N, N5Q, L6S, T22A, I57L, E59K, K69R, Q86E, -107K, N108V, -109D, -123K, -124R, -126L, I133V, V136I, K141E, E144A, Y145H, I153V, N159H, T161R, G194-, K203P, T208K, P210Q, L233M, A238S, D251N, E262K, T263A, I269M, S278-, I279-, T308K, -309D, K319S, G322R, K323E, N328I, T329S, K334N, P335S, T344A, H346L, G351A, K361Q, S370N, -372S, S373T, -374G, -379N, -382L, -383Q, -384G, T385N, M398R, Q414V, K416R, S418E, V431M, N432G, S435K, R462G, K474R; gp41: V28A, Q80R, S88A, S101T, S102T, R106K, L108V, D109A, D110K, N133K, I135L, I140V, K144T, A156E, S163D, D230G, G232D, R233T, L244I, I264L, A268T, N272E, V318I, E320A, A325I; nef: S8R, E24P, E38A, K39R, T50S, T51N, A53E, V101I, Y102W, K105N, T133I, E144Q, R151G, S169N, T176K, K194A; p1: N9H; p17: I34L, F44Y, I60L, G62A, Q65H, I68L, G71S, L75F, F79Y, V82L, A83S, T84V, H89Q, E90A, S111C, N124S; p2: Q6R, S10A, A12-; p24: L15I, H87Q, V91I, M96I, I124V, L205M, S225G; p6: S3N, P5T, L38I; p7: K7R, G8S; pro: T12S, I15V, L19I, K43R; rev: S8N, T15A, Q24R, Q51Y, G56S, T62D, A68E, N82T, S86N, P91T, V109I; tat: A21P, D61G; vif: I31K, G37R, P47H, R184K, N190S; vpr: I37V, G41S, I63T, L67I, I70V; vpu: Q2P, V5E, L16I, I18L, R35K, R47E, E58D, T63Q, D78N, L82M"}}}]}]}]}]}, {"name": "D_NODE_0000010", "node_attrs": {"div": 0.07595999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C23T", "G407A", "C641A", "C767T", "T936C", "G1002A", "G1078C", "T1094C", "A1196G", "C1211T", "G1353C", "G1354A", "G1458A", "C1460T", "A1461G", "C2353T", "G2473A", "C2749T", "T2770C", "T2890C", "G2951A", "A3097T", "T3112C", "G3316A", "G3340A", "A3755C", "T3757G", "G3859A", "G4183A", "G4354A", "G4695A", "T4727C", "T4988G", "C5303T", "C5351T", "T5452C", "T5626A", "C5795A", "C6037G", "-6172G", "-6209A", "-6217A", "-6221G", "-6224G", "A6318C", "A6456G", "T6457A", "A6489C", "A6647G", "A6683C", "T6688G", "C6925T", "-6956A", "-6957A", "-6958T", "-6963C", "-6981G", "-6983T", "-6984C", "-7003T", "A7720G", "A7880G", "A7989G", "G7998A", "C8223T", "G8330C", "C8331T", "C8491G", "G8588A", "G8654A", "T8666G", "T8708C", "A8793C", "G8877C", "T8887A", "A8935T"], "RT-p51": ["A286T", "Q334N"], "RT-p66": ["A286T", "Q334N", "M403V", "N554Q"], "gp120": ["Q155P", "N201R", "K212T", "N272Y", "L289-", "Y290-", "T292-"], "gp41": ["Q229R", "G232D", "T307I", "A343L"], "nef": ["T50S", "D108E", "K151Q", "N161T", "E179Q", "V182K", "K198M"], "p17": ["D102E"], "p2": ["A12T"], "p24": ["G116A", "G208Q"], "tat": ["Y26H", "S61G"], "vif": ["G37R", "D134E"], "vpu": ["L7I", "T63K"]}, "labels": {"aa": "RT-p51: A286T, Q334N; RT-p66: A286T, Q334N, M403V, N554Q; gp120: Q155P, N201R, K212T, N272Y, L289-, Y290-, T292-; gp41: Q229R, G232D, T307I, A343L; nef: T50S, D108E, K151Q, N161T, E179Q, V182K, K198M; p17: D102E; p2: A12T; p24: G116A, G208Q; tat: Y26H, S61G; vif: G37R, D134E; vpu: L7I, T63K"}}, "children": [{"name": "KX907406", "node_attrs": {"div": 0.12721, "accession": "KX907406", "clade_membership": {"value": "D"}, "country": {"value": "TZ"}, "date": {"value": 2004.0}, "Strain_name": {"value": "CO6405V4"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A398G", "T466A", "A513T", "G520C", "C525T", "A530G", "T536C", "A537G", "A541C", "T549A", "C558A", "A571T", "T572C", "T575C", "G579T", "A620G", "A641G", "G644A", "A645T", "A647G", "A680G", "G687A", "T731C", "C747T", "C773T", "G829A", "G837A", "C902T", "G944A", "T962G", "A980G", "A986C", "T992G", "A1002C", "T1003A", "G1005C", "C1013T", "G1016T", "A1017C", "A1089C", "G1090A", "A1109G", "A1115C", "C1118T", "A1124G", "A1142G", "T1143C", "T1172A", "C1178T", "C1220T", "T1262C", "C1316T", "A1328G", "A1370G", "A1404G", "A1441G", "A1449G", "T1452G", "T1460A", "G1474A", "A1479C", "A1480C", "A1486G", "G1487A", "C1492A", "T1502C", "A1529G", "A1536C", "A1543G", "G1553A", "G1562A", "G1588A", "T1679C", "G1697A", "A1760C", "G1766A", "A1772G", "T1791G", "T1792C", "A1819G", "G1840A", "C1853T", "G1906A", "A1927G", "A1930T", "A1932G", "G1942A", "A1951G", "G1968A", "T1978C", "C1986T", "C1987T", "A2056G", "C2080A", "G2134A", "T2158A", "A2215T", "G2241A", "A2243G", "T2266C", "T2302C", "A2314G", "G2380A", "G2392A", "G2422A", "G2447A", "G2456T", "A2457G", "C2503T", "A2519G", "A2557G", "A2578G", "A2626C", "T2668A", "A2677G", "G2686A", "A2698G", "A2722G", "G2727A", "T2735C", "A2828C", "G2833A", "C2834G", "A2842G", "A2845C", "C2909T", "T2917C", "C2941T", "A2959C", "C2978T", "A3028G", "T3045C", "C3060T", "A3071G", "C3095A", "A3127G", "G3170A", "C3207T", "A3218G", "G3221T", "C3222G", "G3280A", "A3292C", "A3302G", "A3304G", "C3322T", "G3385A", "G3388A", "A3403G", "T3412A", "G3431T", "A3457G", "A3502C", "C3508T", "C3545T", "A3547G", "G3562A", "C3577T", "G3651A", "C3712T", "A3775G", "G3796A", "T3799C", "A3802G", "T3829C", "G3834A", "T3970C", "G3989A", "T4006G", "A4030G", "G4057A", "C4072T", "C4078T", "A4084G", "G4109A", "T4110C", "G4112A", "G4151C", "A4178G", "G4263A", "A4285G", "A4407G", "G4495A", "T4498C", "C4576T", "C4645A", "T4655C", "T4674C", "A4693G", "A4694C", "T4742C", "A4751T", "C4776T", "G4782A", "T4910C", "T4943C", "T4969G", "T4976C", "T5028C", "A5036G", "T5072A", "G5120A", "A5122T", "A5159G", "C5221T", "A5225C", "G5226A", "C5237T", "C5242T", "G5267A", "A5282T", "T5292C", "A5312G", "T5314C", "A5396G", "C5412T", "G5427A", "G5432A", "T5436C", "G5463A", "T5466C", "T5467A", "A5480C", "T5484G", "A5491T", "G5496A", "G5558A", "G5561A", "C5563A", "G5599A", "T5600C", "C5602T", "T5621A", "C5653G", "T5654C", "A5659C", "A5682T", "T5686G", "T5687G", "A5703G", "A5708G", "G5712A", "G5729T", "G5784A", "A5790G", "G5800A", "A5806G", "T5807G", "A5828T", "G5839A", "G5842A", "C5851T", "G5864A", "A5866C", "A5867G", "T5870C", "C5916A", "C5917A", "A5954G", "T5980C", "A5995C", "C5998T", "A6020G", "A6030T", "A6065G", "C6067T", "G6079A", "T6091C", "C6110G", "A6158C", "C6160G", "C6163T", "A6164T", "T6169G", "-6170A", "-6174A", "-6175A", "-6179G", "-6180G", "-6181C", "-6186G", "-6187G", "A6188G", "-6189C", "C6190A", "A6192G", "T6193C", "-6198G", "-6201C", "-6202T", "-6203G", "-6204G", "-6205G", "-6206A", "-6207C", "-6208A", "-6210T", "-6211G", "-6212G", "-6213C", "-6214A", "A6215C", "-6216T", "G6218T", "G6220A", "-6222T", "-6225C", "G6227C", "A6228T", "A6229G", "G6232A", "A6233G", "A6251G", "T6252C", "G6267A", "A6268T", "T6271C", "A6275C", "C6281A", "T6287C", "T6289C", "T6297C", "T6298C", "T6315A", "A6324G", "T6328C", "A6333G", "A6338G", "G6339A", "T6340G", "G6345T", "A6374G", "G6380T", "G6392A", "T6395A", "C6427T", "A6443C", "A6464C", "A6500T", "T6523C", "C6548T", "T6598C", "A6605G", "A6618C", "C6619T", "G6638A", "G6644A", "A6648C", "T6655C", "A6689G", "C6719A", "T6722G", "A6725G", "C6729A", "A6731G", "G6732T", "A6737G", "A6742G", "A6767G", "G6773A", "C6777A", "A6778T", "A6790C", "C6792T", "T6793G", "T6794A", "T6795C", "C6800T", "A6801G", "G6810C", "T6815C", "A6822G", "C6827T", "T6828A", "A6837G", "A6839T", "A6855G", "A6856C", "C6857A", "C6858A", "A6859T", "T6860G", "C6874T", "T6916C", "T6943C", "A6956G", "A6960T", "T6964G", "C6966A", "A6967T", "-6968A", "-6969C", "-6970T", "-6971A", "-6972G", "-6973T", "-6974A", "-6982C", "T6983C", "-6985A", "T6988C", "T6991C", "-6993C", "-6994A", "-6995G", "-6996A", "-6997C", "-6998C", "-6999C", "-7000A", "-7001A", "-7002T", "A7007-", "C7008-", "A7009-", "C7018A", "C7020A", "A7065G", "G7072A", "A7089C", "A7093G", "A7100C", "A7101T", "A7148G", "A7155G", "T7156C", "-7160C", "G7190A", "G7197A", "A7219G", "G7256A", "A7275G", "A7294G", "T7403C", "A7420G", "A7428G", "G7448C", "A7471G", "G7477T", "T7565C", "G7633C", "T7675C", "A7698T", "C7699T", "C7702T", "A7782C", "A7799C", "G7846A", "A7903G", "G7915A", "C7960A", "G7965A", "C8080A", "A8163G", "C8213A", "G8242A", "T8257A", "A8272G", "C8291A", "T8293C", "A8297G", "C8302A", "A8303G", "G8304T", "G8323A", "A8338T", "A8353G", "G8365A", "G8368A", "T8369G", "C8386T", "A8396C", "A8403C", "G8404A", "A8405C", "C8471T", "G8487A", "A8490G", "G8491A", "T8492A", "A8525G", "T8558C", "G8589T", "A8636T", "C8694A", "G8717T", "A8754T", "C8755G", "T8789C", "C8812A", "A8824C", "G8852A", "T8855C", "G8861A", "C8869A", "G8905A", "A8906G", "A8909G", "A8930G", "G8931C", "G8942A", "C8967T", "T8976A", "A9005G", "C9012T", "C9017T"], "INT": ["R20K", "V72I", "V112T", "V113I", "V126L", "I135V", "G163E", "K211R"], "RT-p51": ["E40D", "R49K", "I50V", "V118I", "D121C", "I142V", "E177D", "R211K", "F214L", "K245Q", "P247A", "E250D", "V317A", "S322L", "I326V", "G359S", "A371V", "I375V", "A376C", "E399D", "I403V"], "RT-p66": ["E40D", "R49K", "I50V", "V118I", "D121C", "I142V", "E177D", "R211K", "F214L", "K245Q", "P247A", "E250D", "V317A", "S322L", "I326V", "G359S", "A371V", "I375V", "A376C", "E399D", "A446S", "S519N"], "gp120": ["E4N", "N5D", "T21K", 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"T138C", "T157N", "C169S", "M173I", "P176Q", "R188K", "E197Q"], "p17": ["F44Y", "I60L", "G62A", "I68V", "Q69P", "S72T", "L75I", "Y79F", "V82L", "I104L"], "p2": ["Q6R", "N9G", "S10A", "I13V"], "p24": ["S33N", "V36I", "H87Q", "V91H", "A92P", "Q95H", "M96L", "S120H", "E128D", "S225G"], "p6": ["K27N", "L38A", "T39A", "N47S"], "p7": ["R3K", "N5P", "K7R", "P9Q", "I24L", "K26R", "R41K"], "pro": ["M36I", "K45R", "R57K"], "rev": ["A15T", "V16I", "L78I"], "tat": ["N7S", "R19K", "C31S", "Q35P", "I39L", "G61D", "S62N", "Q63K", "K71E", "P84Q", "E86K"], "vif": ["T20K", "Y30H", "K36S", "V66I", "I128R", "K179M"], "vpr": ["E6N", "T19A", "S41H", "H45Y", "A55T", "I60L", "I63T", "I70V"], "vpu": ["V5E", "L16A", "I18L", "F27G", "K34R", "W41L", "V65M", "M67G", "H74L", "D78N", "V79I"]}, "labels": {"aa": "INT: R20K, V72I, V112T, V113I, V126L, I135V, G163E, K211R; RT-p51: E40D, R49K, I50V, V118I, D121C, I142V, E177D, R211K, F214L, K245Q, P247A, E250D, V317A, S322L, I326V, G359S, A371V, I375V, A376C, E399D, I403V; RT-p66: E40D, R49K, I50V, V118I, D121C, I142V, E177D, R211K, F214L, K245Q, P247A, E250D, V317A, S322L, I326V, G359S, A371V, I375V, A376C, E399D, A446S, S519N; gp120: E4N, N5D, T21K, K34E, I56V, E59V, N71D, Q86E, N102Q, T104S, D105E, -106M, -107K, -109G, -110T, -111R, -112G, -113A, -114S, -115N, -116S, -117T, I133A, R138N, K141Q, Q143K, Y145H, F148S, V154E, D157G, N160S, S162E, R164M, T174A, A176S, V180I, S181T, I197L, K204Q, T216S, N255T, E262K, V264I, E265A, I279V, -289I, -290W, -292N, G293D, -294A, I295K, I305V, A308D, K312N, T313M, L314T, Q316W, K319T, N323S, L325Y, K328R, T329S, K334S, P335N, S336A, N368D, N369I, S370T, T371N, -372T, -374S, -375P, -379N, -381D, -382P, -383I, P389Q, K404R, M406I, E412A, N416L, N433D, N437H, D446N, R448K, V468I, K474R; gp41: N42S, E49Q, S88P, E110D, Y132F, N160T, G221E, N287S, L304I, L330I, I332V, R334V; nef: K4R, S8N, S9K, A15V, E18D, R21H, D24N, G29D, A49T, S50E, A83S, E98D, Q118K, Y120F, Q125H, T138C, T157N, C169S, M173I, P176Q, R188K, E197Q; p17: F44Y, I60L, G62A, I68V, Q69P, S72T, L75I, Y79F, V82L, I104L; p2: Q6R, N9G, S10A, I13V; p24: S33N, V36I, H87Q, V91H, A92P, Q95H, M96L, S120H, E128D, S225G; p6: K27N, L38A, T39A, N47S; p7: R3K, N5P, K7R, P9Q, I24L, K26R, R41K; pro: M36I, K45R, R57K; rev: A15T, V16I, L78I; tat: N7S, R19K, C31S, Q35P, I39L, G61D, S62N, Q63K, K71E, P84Q, E86K; vif: T20K, Y30H, K36S, V66I, I128R, K179M; vpr: E6N, T19A, S41H, H45Y, A55T, I60L, I63T, I70V; vpu: V5E, L16A, I18L, F27G, K34R, W41L, V65M, M67G, H74L, D78N, V79I"}}}, {"name": "D_NODE_0000011", "node_attrs": {"div": 0.07912999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C774A", "T1362C", "A2395G", "T2479C", "C3688T", "A5448G", "A5560G", "A5576T", "G5730T", "T5778C", "A5787T", "T5788A", "T5789G", "A5908G", "A6195G", "-6222A", "T6325C", "T6337C", "T6690C", "A6693C", "-7004G", "-7005A", "T7087C", "A7269G", "G8219A", "T8281C", "A8918G"], "gp120": ["D251N", "H280S", "P285-", "G286-", "A288-", "T291-", "K472R"], "gp41": ["A306T"], "nef": ["Q104K"], "p24": ["L15I"], "rev": ["I21F"], "tat": ["S62G", "D67V"], "vpu": ["W41C"]}, "labels": {"aa": "gp120: D251N, H280S, P285-, G286-, A288-, T291-, K472R; gp41: A306T; nef: Q104K; p24: L15I; rev: I21F; tat: S62G, D67V; vpu: W41C"}}, "children": [{"name": "D_NODE_0000012", "node_attrs": {"div": 0.08277999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A152C", "A562G", "A647G", "C978T", "T2302C", "A2566G", "A2881G", "T3097C", "C4569T", "A4694C", "T5636C", "C5653A", "A5702G", "A5703G", "T5850C", "T5980C", "C6076A", "-6175G", "T6184-", "G6227A", "G6339A", "A6525G", "C6673A", "C6708T", "T6735C", "A6749G", "G6773A", "T6916C", "-6977A", "-6978C", "-6979A", "-6982G", "-7006C", "A7149C", "T7150A", "A7161C", "C7658G", "T8205G", "A8216G", "C8590A", "C8652A", "C8688A", "T8700A", "A8847T"], "INT": ["A265V"], "gp120": ["D74E", "S162N", "K224R", "N273K", "I279T", "I295-", "D297-", "R299G"], "gp41": ["Q119E", "I301S", "N305D"], "nef": ["A83E", "H116N", "Y120I"], "p17": ["K76R", "I104M"], "p2": ["I13A"], "vif": ["K36N"], "vpu": ["V10A", "L16I", "K32R"]}, "labels": {"aa": "INT: A265V; gp120: D74E, S162N, K224R, N273K, I279T, I295-, D297-, R299G; gp41: Q119E, I301S, N305D; nef: A83E, H116N, Y120I; p17: K76R, I104M; p2: I13A; vif: K36N; vpu: V10A, L16I, K32R"}}, "children": [{"name": "M27323", "node_attrs": {"div": 0.10783, "accession": "M27323", "clade_membership": {"value": "D"}, "country": {"value": "CD"}, "date": {"value": 1983.0}, "Strain_name": {"value": "NDK"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C40-", "T41-", "G47A", "C48T", "T91C", "C150T", "C153G", "G167A", "G224A", "C227A", "G265A", "A301G", "G378A", "A388G", "A423G", "G424C", "A435T", "A437G", "G438A", "G468A", "A491G", "G534T", "G542A", "C558A", "G629A", "T636G", "G678A", "C698T", "A699-", "C700-", "A701-", "G702-", "G703-", "A704-", "A705-", "A706-", "C707-", "T731C", "T824C", "A833G", "C926T", "G956C", "T974C", "G977A", "A1002G", "G1016A", "T1280C", "T1385C", "A1404G", "C1444T", "A1449G", "T1501G", "A1526G", "T1537C", "G1562A", "T1583C", "A1643G", "C1676T", "T1828C", "G1906A", "A1927G", "C1986T", "C2003T", "A2014G", "C2263T", "A2362G", "T2443C", "C2464T", "T2542C", "C2770T", "A2830C", "C2909G", "A2972G", "A3080C", "C3095G", "G3142A", "T3165C", "G3264A", "A3502C", "A3511G", "G3553A", "T3602C", "T3668C", "A3802G", "A3874G", "T3977C", "A3979G", "A4054G", "G4060A", "C4123T", "G4148A", "T4177G", "C4318T", "A4407G", "C4428T", "C4726A", "A4786C", "G4816A", "T4932G", "G4982T", "A5037G", "A5134G", "T5197C", "A5272T", "T5303C", "G5349A", "C5397T", "C5404T", "C5445T", "G5546A", "G5561A", "G5599T", "A5601C", "T5687A", "G5784A", "T5787A", "A5867G", "G5900A", "C5917T", "T5948G", "C5958A", "C6026T", "G6079A", "C6139T", "-6170G", "T6171A", "G6172A", "A6173T", "-6174T", "A6177G", "T6178G", "-6179A", "-6180A", "-6181C", "C6183G", "-6184C", "-6186A", "-6187G", "A6188G", "-6189G", "A6194G", "T6196G", "A6197-", "T6199-", "A6200-", "-6210A", "-6211G", "-6212G", "-6213T", "-6214A", "A6215G", "-6216A", "A6223G", "-6225A", "T6231G", "A6251-", "T6252-", "A6253-", "A6254-", "C6255-", "C6256-", "A6257-", "C6258-", "A6259-", "G6260-", "T6261-", "A6262-", "A6268G", "A6276G", "A6278G", "G6303A", "A6316G", "C6336G", "C6337G", "A6339C", "T6340C", "A6359G", "G6368A", "G6392A", "G6403A", "A6420T", "A6475G", "A6488T", "G6526A", "C6612T", "A6618C", "A6639C", "G6644A", "A6648T", "A6674T", "A6682G", "C6692-", "C6693-", "T6694-", "A6695-", "T6696-", "-6698T", "-6699C", "-6700G", "-6701A", "-6702T", "G6710A", "G6716T", "C6729T", "G6732C", "C6735A", "T6738C", "G6743T", "T6766A", "T6772C", "A6791G", "G6810C", "T6815C", "T6849C", "A6856G", "A6887T", "G6894T", "T6895G", "T6896C", "A6913C", "G6935A", "A6959C", "T6961G", "C6966A", "A6967T", "-6974A", "-6975G", "-6976T", "-6980G", "C6984T", "-6985C", "T6991-", "A6992-", "A7005G", "A7010G", "A7040G", "A7046T", "G7055A", "A7095T", "G7132A", "A7148G", "-7160T", "A7163C", "T7172A", "C7250A", "G7269A", "A7275G", "A7322G", "T7403A", "A7420C", "G7459A", "A7533G", "A7572G", "A7573G", "G7594A", "G7765A", "A7820T", "T7844C", "C7938T", "G7965A", "C8026A", "C8028T", "A8029T", "A8036T", "T8047C", "C8051A", "T8091C", "T8155C", "T8164C", "A8193G", "G8243A", "A8264G", "G8288A", "A8297G", "A8370T", "G8407A", "C8500A", "G8502A", "A8503C", "C8510A", "A8516G", "A8528G", "C8552T", "A8597T", "A8654G", "T8747C", "G8772C", "G8817A", "A8823G", "T8855A", "A8887T", "T8913C", "A8934C", "C8966T", "C8971T", "T8974C", "G9030T", "T9075C", "G9132A", "C9133T"], "INT": ["A125T", "K211R", "T218I"], "RT-p51": ["K245N", "P272A", "I293V", "I329L", "N334D", "M357T", "R390K"], "RT-p66": ["K245N", "P272A", "I293V", "I329L", "N334D", "M357T", "R390K", "V403I"], "gp120": ["N5D", "V16I", "S32A", "T35K", "-106E", "-107L", "N108R", "-113N", "-114S", "-115K", "-116G", "-117N", "-118G", "-119K", "-120V", "-121E", "-122E", "-123E", "-124E", "E125K", "M126R", "I133V", "T134-", "T135-", "V136-", "V137-", "K141R", "K142E", "R150K", "N169D", "A172T", "V180I", "Y189F", "T212S", "A253V", "N255T", "E262A", "V264I", "E265V", "N274Y", "G284-", "Q287-", "-294K", "-295T", "-297Y", "N304K", "T313A", "K319T", "I332T", "T345S", "S347M", "F348L", "E353D", "G361R", "N368-", "S370Q", "-372N", "-374T", "-375G", "-376F", "-377N", "-379G", "-381V", "I386-", "I396V", "M398L", "G401R", "Q414L", "N416K", "N437H", "F440I", "L466I", "R472K", "K474R"], "gp41": ["M7V", "L34M", "Q39H", "K77R", "K90R", "Q166K", "I173L", "A212V", "G221E", "F241L", "S242F", "I245F", "L263S", "K297R", "G314R", "I321V", "V329I", "I332V"], "nef": ["I10L", "R22K", "A53D", "D54T", "E144Q", "G159R", "T161D", "H171Q", "K182M", "F191L", "M198L"], "p17": ["A15T", "K18R", "R30A", "I34L", "V35I", "A45T", "A67S", "L75I", "L101V", "A115T", "T122-", "G123-", "N124-"], "p2": ["A7V", "N9G"], "p24": ["E75D", "S225G"], "p6": ["T39A", "L50S"], "p7": ["I12S", "I24T"], "pro": ["M36I", "H69Y", "I72M"], "rev": ["D11N", "V16I", "L60I", "S61C", "Y63F", "S67P", "A68E", "S103P", "S106P"], "tat": ["P10S", "R57K", "G62D", "K71E", "P77S", "E86K"], "vif": ["P47H", "K67T", "R77K", "S116A", "R132S", "T151A", "H183R"], "vpr": ["G82S"], "vpu": ["F27Y", "L61R", "S62E", "K63E", "V65S", "E66K", "M67L", "G68-", "-69V", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: A125T, K211R, T218I; RT-p51: K245N, P272A, I293V, I329L, N334D, M357T, R390K; RT-p66: K245N, P272A, I293V, I329L, N334D, M357T, R390K, V403I; gp120: N5D, V16I, S32A, T35K, -106E, -107L, N108R, -113N, -114S, -115K, -116G, -117N, -118G, -119K, -120V, -121E, -122E, -123E, -124E, E125K, M126R, I133V, T134-, T135-, V136-, V137-, K141R, K142E, R150K, N169D, A172T, V180I, Y189F, T212S, A253V, N255T, E262A, V264I, E265V, N274Y, G284-, Q287-, -294K, -295T, -297Y, N304K, T313A, K319T, I332T, T345S, S347M, F348L, E353D, G361R, N368-, S370Q, -372N, -374T, -375G, -376F, -377N, -379G, -381V, I386-, I396V, M398L, G401R, Q414L, N416K, N437H, F440I, L466I, R472K, K474R; gp41: M7V, L34M, Q39H, K77R, K90R, Q166K, I173L, A212V, G221E, F241L, S242F, I245F, L263S, K297R, G314R, I321V, V329I, I332V; nef: I10L, R22K, A53D, D54T, E144Q, G159R, T161D, H171Q, K182M, F191L, M198L; p17: A15T, K18R, R30A, I34L, V35I, A45T, A67S, L75I, L101V, A115T, T122-, G123-, N124-; p2: A7V, N9G; p24: E75D, S225G; p6: T39A, L50S; p7: I12S, I24T; pro: M36I, H69Y, I72M; rev: D11N, V16I, L60I, S61C, Y63F, S67P, A68E, S103P, S106P; tat: P10S, R57K, G62D, K71E, P77S, E86K; vif: P47H, K67T, R77K, S116A, R132S, T151A, H183R; vpr: G82S; vpu: F27Y, L61R, S62E, K63E, V65S, E66K, M67L, G68-, -69V, -70E, -71M, -72G"}}}, {"name": "D_NODE_0000013", "node_attrs": {"div": 0.08914, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C161A", "G709A", "A1328G", "T1422C", "G1450A", "G1588A", "A1602C", "G1736A", "G1794A", "G1840A", "C2822T", "A2842G", "A2845G", "A2925G", "A3200G", "G3221T", "A3302G", "C3322T", "C4072T", "C4078T", "T4498C", "C4576T", "C4643A", "T4665C", "C5242T", "G5587A", "T5621A", "G5842A", "A5866C", "T5870C", "-6201T", "A6329G", "T6655C", "T6738G", "G6743A", "A6744T", "C6745A", "A6960T", "C6963G", "-6968T", "C7020A", "T7165C", "A7231G", "G7367C", "C7368G", "G7508A", "G7628A", "C7699T", "T7722C", "A7799C", "G7880T", "G8170A", "T8197C", "G8323A", "A8338T", "G8595T"], "RT-p51": ["P243S", "K277R", "N334H", "T369A", "A376S", "I403V"], "RT-p66": ["P243S", "K277R", "N334H", "T369A", "A376S"], "gp120": ["E4D", "N159D", "G296-", "N369I", "P389Q", "A432T"], "gp41": ["A22R", "V69I", "D109N", "I140T", "V193L"], "nef": ["V85L"], "p17": ["S125N"], "p24": ["V91I"], "p7": ["R41K", "M46L"], "rev": ["A108T", "*117Q"], "vif": ["N19K", "Y27H"], "vpu": ["V79I"]}, "labels": {"aa": "RT-p51: P243S, K277R, N334H, T369A, A376S, I403V; RT-p66: P243S, K277R, N334H, T369A, A376S; gp120: E4D, N159D, G296-, N369I, P389Q, A432T; gp41: A22R, V69I, D109N, I140T, V193L; nef: V85L; p17: S125N; p24: V91I; p7: R41K, M46L; rev: A108T, *117Q; vif: N19K, Y27H; vpu: V79I"}}, "children": [{"name": "K03454", "node_attrs": {"div": 0.11082, "accession": "K03454", "clade_membership": {"value": "D"}, "country": {"value": "CD"}, "date": {"value": 1983.0}, "Strain_name": {"value": "ELI"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "C379A", "T466A", "A521G", "T549A", "G603A", "A606G", "G608A", "G614T", "A656G", "G956A", "C1091T", "C1136T", "C1137G", "T1325C", "C1456T", "G1461A", "T1462C", "C1517T", "A1579G", "G1604A", "A1619G", "A1642G", "T1682C", "G1685A", "G1757A", "A1832G", "T2005G", "A2038G", "T2053C", "A2215T", "C2464T", "A2482C", "C2492T", "A2629G", "A2692G", "G2705A", "C2742G", "G2872C", "G2880A", "A2883G", "G2926A", "C3023T", "A3193G", "A3216G", "A3249G", "T3303C", "A3502G", "A3511G", "T3550C", "G3651A", "G3757A", "T3865C", "T3976C", "A4338G", "G4340A", "C4426T", "C4428T", "G4459A", "T4537G", "C4721A", "G4782A", "C4965G", "T5019C", "A5058C", "A5121C", "A5128G", "A5159G", "C5268T", "T5293A", "T5351C", "C5356T", "G5437C", "A5480C", "A5491T", "C5495A", "G5496C", "A5545G", "A5621G", "A5659C", "G5700A", "G5711A", "A5718G", "A5720G", "A5734C", "G5747C", "T5791-", "C5792G", "A5794G", "C5797A", "G5802C", "G5803A", "T5807C", "G5808T", "G5809-", "G5810-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5954G", "A6024C", "C6163T", "C6165G", "-6170T", "-6174G", "T6178-", "A6182-", "C6183-", "A6185-", "A6188-", "A6194G", "T6196C", "-6198C", "-6202G", "-6203G", "-6204G", "-6205G", "-6206A", "-6207A", "-6208C", "-6210A", "-6211T", "-6212A", "-6213C", "-6214A", "A6215G", "-6216A", "A6217G", "G6221A", "-6225G", "A6227-", "A6228-", "A6229-", "A6251G", "G6263C", "G6267A", "A6278C", "A6333G", "A6442G", "A6578G", "T6592C", "T6627C", "G6631T", "G6647A", "A6654C", "A6659G", "C6670T", "A6671C", "G6688A", "G6716T", "A6727T", "A6734T", "G6740T", "G6741C", "G6779C", "A6786G", "G6802A", "A6822C", "C6843T", "T6849A", "T6850G", "A6965G", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975A", "-6976T", "-6980G", "G6981A", "-6985A", "-6999G", "-7000C", "-7001A", "-7002C", "T7003A", "G7004A", "C7045G", "G7056C", "T7059G", "G7061-", "G7062-", "A7063-", "A7064-", "G7072A", "C7084T", "G7091A", "C7094A", "A7096C", "A7100C", "A7101T", "C7149T", "-7160A", "C7174T", "A7238C", "C7313T", "G7399A", "T7403A", "A7711G", "A7750G", "G7835A", "A7918G", "T7968C", "A8006G", "T8008G", "C8009A", "G8015C", "A8029G", "T8047C", "A8055G", "C8106T", "G8116A", "A8143C", "G8144A", "C8145T", "A8193G", "C8213T", "A8219G", "G8254A", "G8267A", "C8330T", "T8331C", "G8335A", "T8375G", "G8412A", "G8534C", "T8558C", "T8595C", "T8603C", "A8657G", "C8708T", "G8717A", "G8753A", "T8770A", "G8807A", "C8809A", "A8824C", "T8829A", "G8846A", "G8888A", "G8955A", "C8960A", "C9017A"], "INT": ["K188R", "G189R", "T218I", "N254K"], "RT-p51": ["E40D", "P133S", "I178M", "E204K", "T216R", "K259N", "G262E", "K263R", "K374R", "K385R", "V403A"], "RT-p66": ["E40D", "P133S", "I178M", "E204K", "T216R", "K259N", "G262E", "K263R", "K374R", "K385R", "V403A", "F469L", "S519N"], "gp120": ["K34E", "E57A", "T104S", "N108-", "M126L", "I133V", "V137L", "R138K", "K142Q", "N160S", "I242V", "V258A", "Q259H", "E265K", "N267T", "T269A", "K273Q", "S280P", "-282G", "-283L", "-285Q", "-286S", "Q287R", "-288S", "-289R", "-290S", "-291I", "-292I", "I298-", "G299-", "E309Q", "N311S", "K319R", "N323T", "N327-", "K328N", "T329K", "T371A", "-372W", "S373N", "-374N", "-375I", "-376T", "-377E", "N378S", "-379N", "T380N", "-381S", "-382T", "-383N", "-384T", "-385N", "N397K", "G403-", "K404-", "M406I", "G413R", "Q414N", "N416L", "T432I", "S436T", "K462Q"], "gp41": ["L34M", "V178I", "I222T", "I235V", "V238L", "N251S", "A268V", "E280D", "A281I", "K297R", "L304F", "T306A", "V322I", "L343S"], "nef": ["D24N", "E64S", "F143Y", "A156D", "C163S", "M168I", "D205N", "C206*"], "p1": ["K4R"], "p17": ["A15K", "F44Y", "S72T", "E90K", "R91G", "E93D"], "p2": ["A11V", "A13T"], "p24": ["L136V"], "p7": ["K38R"], "pro": ["T12A", "L63P", "H69Q"], "rev": ["H53R", "S54E", "G56A", "S61G", "S67P", "G90R", "S99H"], "tat": ["A21P", "Q35P", "I39L", "T40N", "R57G", "*87Q"], "vif": ["D45E", "V66I", "H127D", "K158Q", "K179Q", "K181R"], "vpr": ["E6A", "T19A", "A55V", "T84I"], "vpu": ["V5G", "I18L", "R35K", "K38R", "I43L", "R47T", "E60D", "L61R", "S62-", "G68-", "-69V", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: K188R, G189R, T218I, N254K; RT-p51: E40D, P133S, I178M, E204K, T216R, K259N, G262E, K263R, K374R, K385R, V403A; RT-p66: E40D, P133S, I178M, E204K, T216R, K259N, G262E, K263R, K374R, K385R, V403A, F469L, S519N; gp120: K34E, E57A, T104S, N108-, M126L, I133V, V137L, R138K, K142Q, N160S, I242V, V258A, Q259H, E265K, N267T, T269A, K273Q, S280P, -282G, -283L, -285Q, -286S, Q287R, -288S, -289R, -290S, -291I, -292I, I298-, G299-, E309Q, N311S, K319R, N323T, N327-, K328N, T329K, T371A, -372W, S373N, -374N, -375I, -376T, -377E, N378S, -379N, T380N, -381S, -382T, -383N, -384T, -385N, N397K, G403-, K404-, M406I, G413R, Q414N, N416L, T432I, S436T, K462Q; gp41: L34M, V178I, I222T, I235V, V238L, N251S, A268V, E280D, A281I, K297R, L304F, T306A, V322I, L343S; nef: D24N, E64S, F143Y, A156D, C163S, M168I, D205N, C206*; p1: K4R; p17: A15K, F44Y, S72T, E90K, R91G, E93D; p2: A11V, A13T; p24: L136V; p7: K38R; pro: T12A, L63P, H69Q; rev: H53R, S54E, G56A, S61G, S67P, G90R, S99H; tat: A21P, Q35P, I39L, T40N, R57G, *87Q; vif: D45E, V66I, H127D, K158Q, K179Q, K181R; vpr: E6A, T19A, A55V, T84I; vpu: V5G, I18L, R35K, K38R, I43L, R47T, E60D, L61R, S62-, G68-, -69V, -70E, -71M, -72G"}}}, {"name": "M22639", "node_attrs": {"div": 0.10835, "accession": "M22639", "clade_membership": {"value": "D"}, "country": {"value": "CD"}, "date": {"value": 1985.0}, "Strain_name": {"value": "Z2Z6_Z2_CDC_Z34"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G32A", "G224A", "T288C", "T305A", "A374G", "A435C", "A491G", "A500T", "T539C", "A541G", "A571T", "A674C", "G677A", "A699G", "A704G", "C890T", "A941G", "T1271A", "A1278G", "A1279G", "T1331C", "A1458G", "T1460C", "T1501C", "A1564G", "A1607G", "A1643G", "T1792C", "T1797G", "C1831T", "C1986T", "A2002G", "A2243G", "A2272C", "A2329G", "T2386G", "G2395A", "G2459A", "C2479T", "C2503T", "G2725A", "T2788G", "C2831T", "A2932G", "C3207T", "C3266T", "A3457G", "A3502T", "C3508T", "C3545T", "C3712T", "G3796A", "C4076A", "G4109A", "C4159T", "C4180T", "A4249G", "A4285G", "A4300T", "A4369G", "T4579C", "A4642G", "A4693G", "C4757T", "G4774T", "A4775G", "A4820C", "T4938G", "T4943C", "T4973C", "C4978A", "A5005G", "A5046G", "A5069G", "C5091T", "G5137A", "C5237T", "A5282C", "C5294T", "C5398A", "G5432A", "A5447G", "C5539A", "C5551T", "G5566A", "T5576A", "T5618C", "G5620C", "A5653G", "T5654C", "T5731A", "C5778T", "G5858A", "C5859A", "T5884G", "A6060G", "C6165T", "T6166A", "-6170A", "A6173G", "-6174A", "-6179G", "-6180T", "-6181C", "-6184A", "-6186T", "-6187G", "-6189A", "C6190G", "G6195A", "-6198A", "A6200G", "-6202C", "A6209-", "-6216C", "G6224A", "-6225T", "A6228G", "C6256T", "A6276C", "G6277A", "G6280A", "T6287C", "A6319C", "G6346A", "A6394G", "G6451A", "G6463A", "A6465G", "T6598C", "A6618T", "T6634C", "A6640G", "A6648C", "A6672G", "C6678T", "C6692T", "C6707T", "A6718G", "G6732A", "G6740A", "A6742T", "C6758T", "G6774A", "G6776A", "C6777A", "A6778T", "A6790G", "T6793A", "G6810T", "A6956G", "C6966A", "-6975C", "-6976A", "A6977G", "C6978A", "-6980T", "T6983G", "-6985T", "A6990G", "-6993C", "-6994A", "-6995G", "-6996A", "-6997G", "-6998T", "-6999C", "-7000A", "-7001G", "-7002A", "C7006T", "A7102T", "C7127T", "-7160T", "A7246G", "C7264T", "G7373T", "G7519A", "A7522G", "A7575T", "A7590C", "G7633C", "C7702A", "G7720A", "A7742C", "G7791A", "C7906T", "C8051A", "A8119G", "A8184G", "A8271G", "A8294C", "G8304C", "A8342C", "A8353G", "G8487A", "C8488G", "A8489G", "A8490G", "A8590G", "T8594G"], "INT": ["L101I", "V112I"], "RT-p51": ["I50V", "E122K", "A371V"], "RT-p66": ["I50V", "E122K", "A371V"], "gp120": ["A2N", "K69R", "T104I", "-106E", "-107K", "-109N", "-110N", "-111V", "-112T", "-122E", "-123E", "-124I", "E125R", "K141T", "Y145H", "K204R", "N255I", "E265A", "K273R", "T275I", "-285L", "-286G", "-288A", "-289L", "-290Y", "-291T", "-292T", "G293K", "-294T", "-295R", "-296S", "-297I", "H302Y", "R307K", "A308N", "K319I", "N368D", "T371K", "-372S", "S373-", "-375E", "-376W", "-377A", "-379S", "-381E", "-382S", "-383D", "-384D", "-385K"], "gp41": ["V24L", "H91L", "N96T", "E110D", "S133R", "K147Q", "S163N", "Q294R", "Q323R", "N331H", "R334T"], "nef": ["K4R", "A49R", "S50G", "E83G"], "p17": ["I34L", "E55D", "Q69R", "Y79F", "T122A"], "p2": ["T12A"], "p24": ["D180E", "N183G"], "p6": ["L38S", "S40A", "S51L"], "p7": ["I12T", "K33R"], "rev": ["S8R", "F21I", "A68E", "T91A"], "tat": ["L8I", "R19K", "K24R", "P59S", "A64T", "V67D"], "vif": ["K19R", "N36S", "R63M", "E78D", "S118A", "P131H", "N140S", "I154V", "R184K"], "vpr": ["H45Y", "I60L"], "vpu": ["L4S", "V5Q", "I16A", "L42I"]}, "labels": {"aa": "INT: L101I, V112I; RT-p51: I50V, E122K, A371V; RT-p66: I50V, E122K, A371V; gp120: A2N, K69R, T104I, -106E, -107K, -109N, -110N, -111V, -112T, -122E, -123E, -124I, E125R, K141T, Y145H, K204R, N255I, E265A, K273R, T275I, -285L, -286G, -288A, -289L, -290Y, -291T, -292T, G293K, -294T, -295R, -296S, -297I, H302Y, R307K, A308N, K319I, N368D, T371K, -372S, S373-, -375E, -376W, -377A, -379S, -381E, -382S, -383D, -384D, -385K; gp41: V24L, H91L, N96T, E110D, S133R, K147Q, S163N, Q294R, Q323R, N331H, R334T; nef: K4R, A49R, S50G, E83G; p17: I34L, E55D, Q69R, Y79F, T122A; p2: T12A; p24: D180E, N183G; p6: L38S, S40A, S51L; p7: I12T, K33R; rev: S8R, F21I, A68E, T91A; tat: L8I, R19K, K24R, P59S, A64T, V67D; vif: K19R, N36S, R63M, E78D, S118A, P131H, N140S, I154V, R184K; vpr: H45Y, I60L; vpu: L4S, V5Q, I16A, L42I"}}}]}]}, {"name": "D_NODE_0000014", "node_attrs": {"div": 0.09044999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G166A", "G215A", "C399A", "G424A", "C794T", "T824C", "C1220T", "T1331C", "G1346A", "C1492A", "G1794A", "T1796C", "C1817G", "A1819G", "A1988C", "A2002G", "G2027A", "A2075C", "T2365A", "G2456T", "G2878A", "C3095A", "T3165C", "A3230G", "A3268G", "G3631A", "T3668C", "C3995A", "G3997A", "T4165C", "G4495A", "G4573A", "T4976A", "G4988A", "T5062C", "G5546A", "A5556C", "A5601T", "A5805C", "A5954G", "C6052T", "G6073A", "-6179G", "-6181T", "-6186A", "-6198C", "-6202C", "-6211G", "-6212A", "-6213C", "A6217G", "G6221A", "A6229G", "A6230G", "C6256T", "G6277A", "A6292G", "T6306C", "G6403A", "C6412A", "G6687A", "C6692T", "C6729G", "A6730C", "A6733G", "C6777A", "T6860C", "-6968T", "-6969G", "-6970G", "-6993C", "-6996A", "-7001A", "-7002A", "C7087A", "A7095T", "A7101G", "C7127A", "A7155G", "G7158C", "T7228C", "A7238C", "C7250A", "A7294G", "T7400G", "A7590C", "T7626A", "G7642A", "C7690A", "T7775C", "A8093C", "A8152G", "A8264G", "G8288A", "A8657G", "G8848A", "G8931C"], "INT": ["L74I"], "RT-p51": ["D121Y", "M357T", "S379G", "I435M"], "RT-p66": ["D121Y", "M357T", "S379G", "I435M", "F469L"], "gp120": ["K34E", "M126V", "L151P", "S280-", "I281-", "G284-", "Q287-", "G293-", "R307G", "A308K", "K312E", "I332T", "S336P", "-372W", "Q414L", "N416R", "L425I", "N433-", "K462Q", "L466I"], "gp41": ["L33V", "N96T", "L108Q", "E137D", "Q166N", "I264L", "I321V", "V329I"], "nef": ["C169N", "E197Q"], "p17": ["R30K"], "p6": ["N47S"], "p7": ["P9Q"], "pro": ["Q7E", "L63P", "I64L", "V77I", "I93L"], "rev": ["D11N", "K14T", "N82T", "I102V"], "tat": ["R57K", "Q60H", "*87Q"], "vif": ["I159T"], "vpu": ["E66D"]}, "labels": {"aa": "INT: L74I; RT-p51: D121Y, M357T, S379G, I435M; RT-p66: D121Y, M357T, S379G, I435M, F469L; gp120: K34E, M126V, L151P, S280-, I281-, G284-, Q287-, G293-, R307G, A308K, K312E, I332T, S336P, -372W, Q414L, N416R, L425I, N433-, K462Q, L466I; gp41: L33V, N96T, L108Q, E137D, Q166N, I264L, I321V, V329I; nef: C169N, E197Q; p17: R30K; p6: N47S; p7: P9Q; pro: Q7E, L63P, I64L, V77I, I93L; rev: D11N, K14T, N82T, I102V; tat: R57K, Q60H, *87Q; vif: I159T; vpu: E66D"}}, "children": [{"name": "AY773338", "node_attrs": {"div": 0.11936999999999999, "accession": "AY773338", "clade_membership": {"value": "D"}, "country": {"value": "ZA"}, "date": {"value": 1984.0}, "Strain_name": {"value": "R2"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T305A", "A388G", "A410G", "G480A", "T495G", "C503A", "A537G", "G582A", "C583T", "G614T", "G956A", "T1280C", "A1382G", "G1450A", "T1610G", "G1713T", "G1766A", "G1840A", "A2026G", "C2071T", "A2215T", "G2305A", "G2380A", "A2457G", "A2566G", "A2626G", "A2629G", "G2686A", "A2764G", "C2770T", "A2829T", "C2848G", "A2881G", "C2975T", "A2985C", "A3200G", "G3238A", "G3290A", "G3379A", "A3400G", "T3449G", "A3539G", "C3600T", "T4258A", "A4259C", "T4260A", "A4270T", "A4376G", "A4384T", "T4386G", "A4420G", "T4521G", "T4524A", "A4546T", "G4553C", "C4569T", "A4570G", "A4571C", "A4642G", "T4665C", "G4685A", "A4688G", "A4695G", "T4742C", "C4757T", "C4771A", "T4772A", "G4779A", "G4861A", "A4863G", "G4864A", "A4880T", "A4904C", "G4913A", "A4937C", "A4946C", "A4956T", "A4970G", "T4991C", "A5012T", "T5035G", "A5046T", "G5049C", "A5094T", "T5152C", "G5167A", "A5173G", "T5203C", "G5212A", "A5213T", "A5261T", "G5341C", "T5347G", "A5360G", "A5396G", "G5432A", "G5441A", "A5471T", "C5478T", "A5588G", "T5636C", "A5702G", "G5711A", "A5716G", "G5747T", "T5791A", "G5856A", "C5920T", "A5950C", "A6009G", "A6040C", "C6165A", "G6167A", "T6171-", "G6172-", "A6173-", "-6180T", "T6184C", "-6187C", "-6189G", "A6192C", "A6194G", "T6196G", "A6197G", "T6199C", "-6201T", "-6203T", "-6204G", "-6205C", "-6206A", "-6207A", "-6208C", "-6210A", "-6214T", "-6216C", "A6219G", "G6220C", "-6225C", "A6226C", "G6232A", "A6276G", "A6279T", "T6287C", "A6288G", "C6317T", "A6329G", "G6401C", "A6448T", "C6632T", "A6639C", "C6673A", "A6674T", "G6681T", "G6688A", "T6694A", "C6708A", "C6719T", "C6721A", "T6722C", "T6766C", "G6779A", "A6785T", "A6788G", "T6794C", "G6810T", "A6821G", "T6849C", "A6854C", "A6855G", "G6935A", "A6937G", "G6948A", "A6959G", "A6960G", "T6964A", "G6981-", "-6985A", "T6991G", "-6994A", "-6995G", "-6997C", "-6998A", "-6999C", "-7000C", "A7005G", "-7006G", "A7010G", "G7056A", "T7081C", "A7097C", "C7124T", "T7125A", "A7126T", "A7148T", "A7152C", "T7153C", "A7157T", "-7160G", "A7161G", "T7162C", "A7167C", "A7183C", "T7213A", "A7224C", "A7245G", "C7260T", "A7261G", "C7305G", "A7306G", "A7307G", "A7309T", "G7310-", "G7311-", "A7312-", "C7313-", "T7314-", "A7315-", "G7316-", "G7317-", "A7318-", "G7319-", "C7320-", "T7321-", "A7322-", "T7323-", "G7324-", "T7325-", "T7326-", "C7327-", "C7328-", "T7329-", "T7330-", "G7331-", "G7332-", "G7333-", "G7373T", "A7376T", "A7382C", "T7413C", "A7428G", "G7438C", "G7448T", "A7449C", "A7531T", "A7542G", "A7549G", "A7553C", "T7622A", "A7642T", "A7649T", "T7691C", "A7694T", "G7701C", "T7704C", "G7712A", "A7713G", "A7714T", "A7721G", "C7723T", "A7742C", "G7791A", "A7795C", "A7801C", "T7815C", "T7827G", "G7831C", 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"N273K", "N274Y", "R276I", "Q277K", "K308E", "E309K", "N311Y", "K319I", "N323D", "K334R", "G361R", "S365N", "N369G", "S370T", "-379K", "-381D", "-382T", "-383N", "-384G", "-385T", "I386V", "G401E", "I415L", "L424Y", "A432Y", "-433T", "N434S", "S436G", "E438A", "S453R", "K457T", "E464G", "A469V"], "gp41": ["A1G", "I2V", "G3-", "L4-", "G5-", "A6-", "M7-", "F8-", "L9-", "G10-", "V24L", "T25S", "T27P", "I37T", "N42S", "E49S", "Q80R", "I84L", "S107T", "Q113H", "T116S", "I131L", "S133T", "L134S", "D137S", "I140V", "K147Q", "S163N", "I171T", "I175R", "M176I", "V178W", "I182P", "L184F", "I186M", "N195H", "I222T", "R233K", "L260F", "I266F", "S302Y", "N305A", "A310V", "V311P", "E320Q", "Q323R", "N331T", "R334T"], "nef": ["P14S", "M79T", "H116N", "V146L", "V153E", "M168I", "L181F", "L189Q", "M198L", "F202Y"], "p17": ["K18R", "G49S", "S54A", "I68V", "A83I", "E93D"], "p2": ["I13A"], "p24": ["V91I"], "p6": ["A12S"], "p7": ["D48E"], "rev": ["S25G", "H53N", "S61R", "E79Q", "N84V", "E115Q"], "tat": ["N7S", "R19K", "C22Y", "Y32F", "K71G"], "vif": ["N19S", "Y27H", "R37G", "A62E", "V65I", "R92K", "R93E", "M109I", "E117D", "I124L", "I128M", "S130R", "L150R", "I154L", "A155P", "T170S", "M189T"], "vpr": ["I37L", "T53S", "S79T", "I81R"], "vpu": ["V10A", "K32R", "R35K", "R37G", "R47I", "L61S", "S62T"]}, "labels": {"aa": "INT: I162Q, I201V, I204R, V249G, V250E, V260L, A265V, K266Q; RT-p51: E40D, Y121C, I178M, K245I, E248D, P294S, E297A, T369A, E399K; RT-p66: E40D, Y121C, I178M, K245I, E248D, P294S, E297A, T369A, E399K, V403I, L452V, I482V, A502V; gp120: S1N, N52S, T104-, D105-, N108-, K141R, K142M, Y145R, P155S, N159D, E183Q, L260F, E262A, N273K, N274Y, R276I, Q277K, K308E, E309K, N311Y, K319I, N323D, K334R, G361R, S365N, N369G, S370T, -379K, -381D, -382T, -383N, -384G, -385T, I386V, G401E, I415L, L424Y, A432Y, -433T, N434S, S436G, E438A, S453R, K457T, E464G, A469V; gp41: A1G, I2V, G3-, L4-, G5-, A6-, M7-, F8-, L9-, G10-, V24L, T25S, T27P, I37T, N42S, E49S, Q80R, I84L, S107T, Q113H, T116S, I131L, S133T, L134S, D137S, I140V, K147Q, S163N, I171T, I175R, M176I, V178W, I182P, L184F, I186M, N195H, I222T, R233K, L260F, I266F, S302Y, N305A, A310V, V311P, E320Q, Q323R, N331T, R334T; nef: P14S, M79T, H116N, V146L, V153E, M168I, L181F, L189Q, M198L, F202Y; p17: K18R, G49S, S54A, I68V, A83I, E93D; p2: I13A; p24: V91I; p6: A12S; p7: D48E; rev: S25G, H53N, S61R, E79Q, N84V, E115Q; tat: N7S, R19K, C22Y, Y32F, K71G; vif: N19S, Y27H, R37G, A62E, V65I, R92K, R93E, M109I, E117D, I124L, I128M, S130R, L150R, I154L, A155P, T170S, M189T; vpr: I37L, T53S, S79T, I81R; vpu: V10A, K32R, R35K, R37G, R47I, L61S, S62T"}}}, {"name": "D_NODE_0000015", "node_attrs": {"div": 0.10129999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G524A", "C662T", "A692G", "A704G", "A725G", "G1461A", "T1752C", "G1766T", "A1793G", "A1804G", "T1828C", "A1903C", "C2010T", "C2080T", "A2455G", "T2499C", "G2714C", "G2727A", "T2737C", "C2941T", "C3023T", "A3265G", "C3691T", "A3816G", "A3825G", "T3976C", "A3979G", "C4426T", "C4501T", "T4674C", "A4769C", "C5018T", "C5052T", "G5561A", "A5659C", "A5708G", "G5729A", "G5789C", "C5862A", "G5896T", "A5926G", "T5948G", "G6001A", "G6028A", "T6100C", "C6145A", "-6170T", "-6174A", "-6180A", "-6187T", "-6189C", "-6201G", "-6208A", "-6210T", "-6214A", "-6216T", "-6225A", "G6263A", "G6303A", "A6442G", "A6478T", "T6511C", "A6514G", "A6578G", "A6583G", "G6611A", "C6758T", "G6776A", "A6781T", "A6837C", "T6849A", "C6875T", "C6876T", "-6978A", "-6979A", "-6980T", "-6982G", "T6983G", "C6984A", "-6994T", "-6995A", "C7014A", "A7036G", "T7150G", "G7198A", "G7256A", "G7620A", "C7640G", "A7747C", "A7782C", "A8029G", "G8030A", "C8031G", "A8032T", "T8279G", "C8291A", "A8388G", "T8414A", "A8458G", "A8528G"], "INT": ["K14R", "N17S"], "RT-p51": ["I135T", "E207Q", "R211K"], "RT-p66": ["I135T", "E207Q", "R211K"], "gp120": ["A3E", "S32A", "-110T", "-112T", "-113N", "-123K", "V137I", "R150K", "I242V", "I243M", "A253T", "H302Y", "K328T", "P341L", "V468I"], "gp41": ["R106K", "Q113E", "E148D", "N160T", "N195K", "N239T", "A243S", "C326G", "L330I"], "nef": ["I16V", "D24E", "K39R"], "p6": ["S25P", "E29D", "K42R", "L50S"], "pro": ["E35D", "A71V"], "rev": ["V16I", "E57N", "S61E", "T62S"], "tat": ["G62D"], "vif": ["Y30H", "E61D", "P156S"], "vpu": ["I18L", "K34R", "C41Y"]}, "labels": {"aa": "INT: K14R, N17S; RT-p51: I135T, E207Q, R211K; RT-p66: I135T, E207Q, R211K; gp120: A3E, S32A, -110T, -112T, -113N, -123K, V137I, R150K, I242V, I243M, A253T, H302Y, K328T, P341L, V468I; gp41: R106K, Q113E, E148D, N160T, N195K, N239T, A243S, C326G, L330I; nef: I16V, D24E, K39R; p6: S25P, E29D, K42R, L50S; pro: E35D, A71V; rev: V16I, E57N, S61E, T62S; tat: G62D; vif: Y30H, E61D, P156S; vpu: I18L, K34R, C41Y"}}, "children": [{"name": "KJ787684", "node_attrs": {"div": 0.14781, "accession": "KJ787684", "clade_membership": {"value": "D"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_RJ095"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C153T", "T165C", "T201A", "C227A", "A301G", "A304T", "T305-", "G378A", "C379A", "A387G", "A388G", "A410G", "A416G", "T422C", "G451A", "G452T", "T495G", "A518T", "A530G", "G534T", "T539A", "C540A", "C558A", "T560A", "A561C", "A569G", "G603C", "A605G", "A606G", "T635C", "A641C", "G667A", "A675C", "G683A", "A689G", "A697G", "C714A", "G716T", "A806G", "A854T", "G908A", "C947T", "A1002G", "C1098G", "C1175A", "A1226G", "A1277G", "T1280C", "T1325C", "A1404G", "T1427A", "C1444T", "A1449G", "G1455A", "A1475G", "T1501G", "A1503G", "C1514T", "A1529G", "C1535T", "A1543G", "T1574C", "G1588A", "A1601G", "T1610G", "C1676T", "T1730C", "C1745-", "C1749-", "C1750-", "T1766C", "G1846A", "C1853A", "A1870G", "G1906A", "A1907G", "C1987T", "C1988T", "A2012G", "T2013A", "T2041G", "C2047T", "T2063C", "G2065A", "T2086A", "C2263T", "A2290G", "G2341A", "G2395A", "T2431G", "T2449C", "C2464A", "G2470A", "C2488T", "T2494C", "C2589T", "T2597C", "G2602T", "T2672C", "G2686A", "C2694T", "G2704A", "C2740T", "A2767G", "A2845G", "C2910A", "T2935C", "G2957T", "A2980G", "A3080C", "G3099A", "C3100A", "T3172A", "G3221T", "A3224T", "C3225T", "G3230T", "A3249G", "C3252T", "C3271T", "A3292C", "A3293C", "C3294T", "A3302G", "G3334A", "G3379A", "G3385A", "A3400G", "T3424C", "G3442A", "T3449A", "A3454G", "G3491A", "G3494A", "T3500C", "A3502G", "G3553A", "A3670T", "A3674C", "G3770A", "G3796A", "A3805G", "A3835G", "A3845G", "T3850G", "C3857A", "G3907A", "G3925A", "T3946C", "T3970C", "A4045G", "C4047A", "C4132A", "C4140T", "C4141T", "G4145A", "C4146G", "A4306G", "C4321T", "C4428T", "T4498G", "C4667T", "G4677A", "A4692C", "T4701C", "C4721T", "C4724T", "C4730T", "C4769T", "T4772C", "G4778A", "A4820C", "G4864A", "G4913A", "T4919C", "T4943C", "A4950C", "A4966G", "T4967A", "A4968G", "A4976C", "A4988C", "A4993C", "A5007C", "T5028C", "C5062G", "A5128G", "G5143A", "T5197C", "G5267A", "T5313C", "T5354C", "G5427A", "A5431G", "G5432A", "G5437C", "C5478T", "G5496A", "C5514A", "C5554A", "T5576A", "A5581G", "C5602G", "T5616C", "A5626T", "C5630G", "G5644A", "G5647T", "C5659T", "A5694G", "A5696G", "A5704C", "G5711A", "C5778T", "G5781T", "T5787C", "A5794G", "A5795C", "A5828T", "G5839A", "G5856A", "C5859G", "G5861A", "G5864A", "A5866G", "A5867G", "G5908A", "A5914C", "A5915T", "T5944C", "A5995G", "A6022G", "A6045G", "T6085G", "A6130T", "-6175G", "C6198G", "-6203G", "-6204G", "-6205G", "-6206A", "-6207G", "C6213T", "A6234G", "A6262G", "A6266G", "G6267A", "A6278G", "G6280A", "C6281A", "G6292T", "C6318A", "A6322G", "A6329-", "A6330-", "T6331-", "A6332-", "A6333-", "T6334-", "G6339C", "C6363T", "T6436A", "C6499T", "A6525G", "G6526A", "A6595G", "C6612T", "G6626A", "C6632T", "G6638A", "G6664A", "C6678G", "T6694A", "C6708A", "A6731C", "G6732A", "T6735A", "A6736G", "A6746G", "G6750A", "A6767G", "A6785C", "T6787G", "A6788G", "C6792T", "T6793G", "T6794A", "C6800G", "G6810A", "C6827T", "T6828A", "C6843G", "A6848G", "T6850G", "C6857T", "C6862T", "C6888G", "T6895C", "G6910A", "G6948A", "A6959G", "A6960T", "A6965G", "T6968A", "G6969A", "-6977G", "-6985G", "T6991C", "C6993G", "A6996C", "-6997A", "-6998T", "-6999G", "-7000G", "G7004C", "-7006G", "C7016A", "A7040G", "A7046C", "G7054A", "G7055A", "G7056C", "A7065C", "T7086G", "T7114C", "T7156C", "A7157T", "A7161-", "T7162-", "A7164C", "C7170T", "T7217C", "A7237G", "A7268G", "G7288A", "G7289C", "A7299G", "A7315G", "C7320T", "G7400C", "T7403C", "C7463A", "G7477A", "A7575T", "C7582T", "A7589G", "T7630G", "G7633A", "A7641G", "A7646T", "G7648A", "C7651T", "C7658G", "G7660A", "A7690G", "C7702T", "G7712A", "T7722C", "A7750G", "C7762T", "A7801C", "A7887G", "T7888A", "C7940T", "A7963C", "T7968C", "G7989T", "A7990G", "G8017A", "A8019C", "A8098G", "A8108C", "C8146A", "T8164C", "G8173A", "T8210C", "T8218C", "C8232T", "G8234A", "T8235C", "G8254A", "G8255A", "T8268C", "A8297G", "T8321G", "T8322C", "C8330T", "T8366G", "A8405G", "A8409G", "G8421T", "T8440C", "A8489T", "T8505A", "G8506C", "T8507A", "A8516G", "T8567A", "A8584T", "A8636T", "A8642G", "C8669T", "T8678C", "A8696G", "C8699T", "A8739G", "A8746T", "T8747C", "A8750C", "A8762T", "G8772A", "A8801G", "G8805A", "G8808C", "C8809T", "A8815C", "A8823G", "C8840T", "A8844C", "G8864T", "C8868T", "C8877G", "A8886C", "G8893A", "A8898G", "A8906G", "C8928A", "G8942A"], "INT": ["S24G", "D25E", "L28I", "M50I", "A91E", "S119R", "T122I", "A124S", "T218I"], "RT-p51": ["D123E", "T165I", "E169D", "T200I", "P272Q", "A288S", "I329L", "G335E", "A376S", "T377L", "G379C", "K385R", "T386I", "E399D", "T400L", "I403V"], "RT-p66": ["D123E", "T165I", "E169D", "T200I", "P272Q", "A288S", "I329L", "G335E", "A376S", "T377L", "G379C", "K385R", "T386I", "E399D", "T400L", "L452I", "V466I", "V467I", "K527Q", "V559I"], "gp120": ["S1N", "A2G", "E3K", "E4K", "N5D", "T21S", "I56M", "N64S", "H77Q", "-106L", "-107K", "-109D", "-111N", "-114S", "-115S", "-116S", "-117G", "-118R", "-119M", "-120I", "-121M", "-122E", "-124E", "K127R", "R138E", "K142E", "Q143K", "P155Q", "I156M", "N159T", "N160T", "T161-", "S162-", "T170I", "K224R", "T253I", "V258I", "L260F", "E262K", "T275R", "R278K", "I279T", "-280S", "-281I", "-284G", "-285Q", "-286G", "-287Q", "-288A", "-289L", "-290Y", "-291T", "-292S", "-293Q", "-294K", "I298V", "R299K", "I305V", "E309D", "N311Q", "T313M", "L314I", "Q316E", "L325Y", "T330R", "T332E", "P335S", "T345R", "S365N", "S373-", "N378-", "T380-", "I386-", "T387-", "L388-", "I396V", "M398L", "G401T", "K404T", "I411R", "A432K", "N437T", "T439I", "R472G", "E479Q", "K482R"], "gp41": ["A6V", "V33L", "L54M", "H91L", "T96A", "D109E", "E113G", "M115L", "Q119E", "D137K", "I140T", "K195R", "P213S", "E220D", "I222T", "R229L", "A310V", "V311T", "V318I", "V322A", "I332V", "L340A", "L343F"], "nef": ["S8R", "T23A", "A27S", "V33A", "C55T", "Y81F", "E98D", "K104Q", "Y120F", "I133V", "Y135F", "E144K", "E155K", "A156L", "E158A", "T161D", "M168L", "E174D", "P176S", "Q179E", "K182Q", "R184K", "N186D"], "p17": ["A15K", "K18G", "R39N", "S54A", "A67S", "Q69K", "L75I", "K76Q", "E90Q", "R91G", "E102D", "S111N", "K114Q", "D121G", "Q127N"], "p2": ["A7V", "N9G", "A11T"], "p24": ["P123A", "S225G"], "p6": ["P24-"], "p7": ["I12S", "I13V", "K26R", "R41K", "D48E"], "pro": ["L19I", "M36I", "N37D", "I72E"], "rev": ["F21I", "P31L", "R48G", "N84D", "E87A", "P100T", "S106P", "V109I"], "tat": ["R19E", "A21P", "H60N", "V67D", "I69V", "K71E", "K85T"], "vif": ["V31I", "K36Q", "F39L", "E78D", "R93K", "M109I", "K122Q", "H127R", "I128V", "E134D", "Q136P", "K141Q", "T159R", "K181R", "S186N"], "vpr": ["A55T", "I70T"], "vpu": ["I7L", "A8G", "V13I", "V14L", "Y30C", "I33L", "R35K", "E58D", "K63A", "H74L", "D78N"]}, "labels": {"aa": "INT: S24G, D25E, L28I, M50I, A91E, S119R, T122I, A124S, T218I; RT-p51: D123E, T165I, E169D, T200I, P272Q, A288S, I329L, G335E, A376S, T377L, G379C, K385R, T386I, E399D, T400L, I403V; RT-p66: D123E, T165I, E169D, T200I, P272Q, A288S, I329L, G335E, A376S, T377L, G379C, K385R, T386I, E399D, T400L, L452I, V466I, V467I, K527Q, V559I; gp120: S1N, A2G, E3K, E4K, N5D, T21S, I56M, N64S, H77Q, -106L, -107K, -109D, -111N, -114S, -115S, -116S, -117G, -118R, -119M, -120I, -121M, -122E, -124E, K127R, R138E, K142E, Q143K, P155Q, I156M, N159T, N160T, T161-, S162-, T170I, K224R, T253I, V258I, L260F, E262K, T275R, R278K, I279T, -280S, -281I, -284G, -285Q, -286G, -287Q, -288A, -289L, -290Y, -291T, -292S, -293Q, -294K, I298V, R299K, I305V, E309D, N311Q, T313M, L314I, Q316E, L325Y, T330R, T332E, P335S, T345R, S365N, S373-, N378-, T380-, I386-, T387-, L388-, I396V, M398L, G401T, K404T, I411R, A432K, N437T, T439I, R472G, E479Q, K482R; gp41: A6V, V33L, L54M, H91L, T96A, D109E, E113G, M115L, Q119E, D137K, I140T, K195R, P213S, E220D, I222T, R229L, A310V, V311T, V318I, V322A, I332V, L340A, L343F; nef: S8R, T23A, A27S, V33A, C55T, Y81F, E98D, K104Q, Y120F, I133V, Y135F, E144K, E155K, A156L, E158A, T161D, M168L, E174D, P176S, Q179E, K182Q, R184K, N186D; p17: A15K, K18G, R39N, S54A, A67S, Q69K, L75I, K76Q, E90Q, R91G, E102D, S111N, K114Q, D121G, Q127N; p2: A7V, N9G, A11T; p24: P123A, S225G; p6: P24-; p7: I12S, I13V, K26R, R41K, D48E; pro: L19I, M36I, N37D, I72E; rev: F21I, P31L, R48G, N84D, E87A, P100T, S106P, V109I; tat: R19E, A21P, H60N, V67D, I69V, K71E, K85T; vif: V31I, K36Q, F39L, E78D, R93K, M109I, K122Q, H127R, I128V, E134D, Q136P, K141Q, T159R, K181R, S186N; vpr: A55T, I70T; vpu: I7L, A8G, V13I, V14L, Y30C, I33L, R35K, E58D, K63A, H74L, D78N"}}}, {"name": "KJ787683", "node_attrs": {"div": 0.14211, "accession": "KJ787683", "clade_membership": {"value": "D"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_RJ108"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C200T", "A263T", "A425G", "A437C", "C482T", "C525T", "A557G", "A585G", "C586T", "A604C", "G607A", "G614T", "G615A", "A645T", "A661G", "G671T", "G687A", "A697C", "G709A", "G771T", "A809G", "A836G", "C890T", "C897T", "T988C", "T992G", "T1003A", "G1005C", "A1007G", "G1016A", "G1019A", "G1077A", "C1091T", "C1137T", "G1192A", "A1208G", "T1214C", "C1229T", "C1253A", "C1304A", "A1328G", "A1337G", "G1388A", "G1397A", "C1406T", "A1418G", "G1450A", "T1457C", "A1464C", "T1483A", "G1553A", "G1562A", "G1670A", "G1673A", "T1679C", "A1691G", "G1725A", "G1736A", "T1741C", "-1746C", "-1747C", "-1748C", "C1749T", "C1751T", "A1781C", "A1835G", "G1846T", "T1895C", "C2071T", "C2083T", "A2140G", "T2206A", "G2241A", "A2242G", "C2281T", "A2344G", "A2491C", "G2548A", "A2560C", "A2569T", "A2627G", "A2629G", "C2671T", "A2674G", "A2722G", "A2734T", "A2752G", "T2788G", "A2818G", "C2831T", "A2841G", "G2847T", "G2869A", "T2905A", "A2951G", "A2972T", "G2984A", "A3058C", "C3067A", "A3095G", "G3166A", "A3214G", "G3221A", "G3250A", "G3280A", "T3303C", "G3388A", "C3394T", "T3436C", "C3444G", "G3477A", "C3497T", "G3523A", "G3529A", "T3550C", "G3562A", "A3571G", "A3595G", "A3622G", "G3651A", "G3664A", "C3665G", "C3692T", "A3745G", "A3808G", "G3989A", "C3994T", "C4021A", "T4024C", "G4057A", "A4084G", "A4106C", "G4112A", "C4129T", "T4147A", "A4196G", "G4252A", "A4315T", "A4354G", "A4385C", "C4534T", "A4642G", "T4676C", "T4701A", "G4708A", "A4709G", "C4757T", "G4770A", "C4771G", "C4776T", "G4829A", "A4858C", "A4863G", "T4914C", "A4937G", "G4953A", "T4967G", "T4973C", "A5042C", "G5049A", "A5122G", "A5173G", "T5188G", "T5203C", "G5212A", "A5213G", "A5215G", "C5237T", "A5284C", "T5293G", "C5294T", "G5296A", "T5303C", "C5356T", "C5398T", "A5446C", "C5452T", "A5453T", "G5587A", "C5602T", "G5650A", "C5653G", "T5654G", "T5669C", "G5700A", "A5718G", "T5829G", "A5840T", "A5907G", "C5917T", "T5941C", "T5971C", "A6020G", "G6029A", "A6030C", "G6079A", "A6092G", "A6142C", "T6155C", "C6160T", "G6167A", "-6175T", "A6177C", "A6186G", "A6194T", "G6195T", "T6196A", "A6200G", "A6212C", "A6215C", "A6219T", "A6221C", "G6224A", "A6226C", "A6233C", "A6273G", "A6320T", "C6325A", "A6330G", "T6331C", "A6333G", "C6337T", "T6358C", "T6382G", "A6430T", "A6505G", "A6508G", "A6606G", "A6661C", "G6688-", "A6689-", "C6690-", "A6691-", "T6692-", "C6693-", "T6696C", "-6697A", "-6698C", "-6699A", "-6700A", "-6701A", "-6702T", "G6716A", "C6719T", "G6774A", "G6779A", "A6785G", "A6790T", "A6791G", "A6814G", "A6821G", "A6822G", "A6854C", "T6863A", "C6864T", "G6935A", "G6936A", "T6949C", "A6957T", "C6963G", "T6964C", "-6971A", "-6972A", "-6973T", "-6974A", "-6975A", "-6976T", "-6977A", "A6984G", "-6985T", "A6990G", "-6997T", "-6998A", "-6999A", "-7000T", "A7002G", "G7004A", "-7006T", "A7013C", "T7105C", "G7132A", "A7138G", "G7146A", "A7148G", "A7149G", "A7152T", "A7154T", "G7155C", "C7158A", "T7159G", "-7160G", "C7171T", "T7172G", "G7190A", "A7255G", "G7357A", "C7407T", "C7429T", "C7498T", "A7542G", "A7589T", "T7604A", "T7624C", "A7627G", "G7628A", "T7630C", "A7666G", "G7676A", "G7701A", "A7706C", "A7714C", "A7744G", "T7748C", "G7777A", "A7790G", "G7791A", "C7792T", "A7800G", "A7818G", "A7885G", "T7888G", "A7918G", "A7969C", "C7988A", "C8005A", "T8007C", "G8017C", "A8019T", "C8028T", "T8047C", "A8055G", "C8062T", "A8076G", "A8086C", "T8097C", "G8105A", "A8118G", "G8158A", "G8170A", "A8180G", "C8221T", "T8223C", "A8227T", "G8245A", "T8257A", "G8267T", "G8276A", "C8277T", "T8293C", "C8302T", "G8323A", "C8330G", "T8331C", "A8342G", "C8351T", "A8378G", "A8503C", "G8534A", "A8536G", "G8537A", "G8540A", "C8543T", "C8552T", "G8561A", "C8590G", "G8595C", "A8597G"], "INT": ["V72I", "K111Q", "V113I", "I141V", "I204L"], "RT-p51": ["R49K", "I178V", "K249R", "S251I", "T286A", "I293L", "E297K", "D324E", "N334D", "A376T", "I403T", "M435I"], "RT-p66": ["R49K", "I178V", "K249R", "S251I", "T286A", "I293L", "E297K", "D324E", "N334D", "A376T", "V403T", "M435I", "T450S", "R461K", "P468S", "S519N", "Q524E"], "gp120": ["K18R", "I56V", "E59T", "I80V", "D105S", "-106A", "-107N", "-109C", "-111S", "-114L", "-115T", "-116G", "-122P", "K123R", "-124L", "K127Q", "K140R", "I156L", "D157E", "N159S", "N160S", "N251S", "Q277K", "G307E", "E309N", "N311D", "E312N", "T313A", "K319R", "N323G", "T332N", "K334Q", "S337I", "G361K", "N368K", "-374T", "-375N", "-376N", "-377S", "-379S", "T387Q", "G431D", "A432G", "-433I", "N434S", "S435K", "S436D", "F440V", "D446N"], "gp41": ["S35F", "Q80R", "T96S", "S101T", "D109N", "D125N", "S133N", "I135L", "S163D", "N166R", "K172R", "I235T", "T239I", "S242L", "N251S", "H258R", "R261S", "L265S", "A268T", "E272G", "S293G", "I307T", "V322L", "A325I", "L343A"], "nef": ["D54A", "E65G", "A83G", "V85L"], "p17": ["T84V", "E90A", "R91K", "E93D", "V94I", "I104L", "N109S", "K112N", "A118T", "D121A", "S125N"], "p2": ["M14L"], "p24": ["A14S", "V86A", "H87Q", "V91N", "A92P", "M96I", "A116T", "R154K"], "p6": ["G16R", "I21T", "-23P", "P24S", "P25Q", "E34D"], "p7": ["F6Y"], "pro": ["I13V"], "rev": ["A47E", "H53N", "N57H", "S67P", "P72S", "S86N", "V104M", "A108T", "E111G"], "tat": ["K24Q", "H26F", "Q87S"], "vif": ["N19S", "F39I", "R41K", "A62S", "K91T", "R93G", "Y110H", "A123T", "H127Q", "S130R", "A155T", "K179R"], "vpr": ["S28R", "I37V", "H45Y", "I63M", "T84I"], "vpu": ["A15T", "L16G", "V21A", "H74Q", "D78V"]}, "labels": {"aa": "INT: V72I, K111Q, V113I, I141V, I204L; RT-p51: R49K, I178V, K249R, S251I, T286A, I293L, E297K, D324E, N334D, A376T, I403T, M435I; RT-p66: R49K, I178V, K249R, S251I, T286A, I293L, E297K, D324E, N334D, A376T, V403T, M435I, T450S, R461K, P468S, S519N, Q524E; gp120: K18R, I56V, E59T, I80V, D105S, -106A, -107N, -109C, -111S, -114L, -115T, -116G, -122P, K123R, -124L, K127Q, K140R, I156L, D157E, N159S, N160S, N251S, Q277K, G307E, E309N, N311D, E312N, T313A, K319R, N323G, T332N, K334Q, S337I, G361K, N368K, -374T, -375N, -376N, -377S, -379S, T387Q, G431D, A432G, -433I, N434S, S435K, S436D, F440V, D446N; gp41: S35F, Q80R, T96S, S101T, D109N, D125N, S133N, I135L, S163D, N166R, K172R, I235T, T239I, S242L, N251S, H258R, R261S, L265S, A268T, E272G, S293G, I307T, V322L, A325I, L343A; nef: D54A, E65G, A83G, V85L; p17: T84V, E90A, R91K, E93D, V94I, I104L, N109S, K112N, A118T, D121A, S125N; p2: M14L; p24: A14S, V86A, H87Q, V91N, A92P, M96I, A116T, R154K; p6: G16R, I21T, -23P, P24S, P25Q, E34D; p7: F6Y; pro: I13V; rev: A47E, H53N, N57H, S67P, P72S, S86N, V104M, A108T, E111G; tat: K24Q, H26F, Q87S; vif: N19S, F39I, R41K, A62S, K91T, R93G, Y110H, A123T, H127Q, S130R, A155T, K179R; vpr: S28R, I37V, H45Y, I63M, T84I; vpu: A15T, L16G, V21A, H74Q, D78V"}}}]}]}]}]}]}]}]}, {"name": "D_NODE_0000016", "node_attrs": {"div": 0.06387999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C23T", "G32A", "A152T", "G702A", "A1496G", "T1679C", "T2195C", "T2369C", "G2602A", "A2713G", "G2926A", "A2962G", "A3224C", "C3225A", "A3230T", "A3364T", "A3538C", "T3820C", "A4069C", "T4703G", "T4932G", "C5237T", "T5293C", "G5370A", "G5437C", "C5548A", "A5560G", "C5679T", "A5694G", "A5696G", "A5702G", "C5763T", "A5805G", "C5851A", "C5998A", "A6076G", "C6190-", "T6287C", "A6313G", "T6337C", "T6358C", "T6395A", "T6457C", "A6640G", "A6683C", "C6827T", "C7127T", "T7222C", "G7256A", "A7373T", "G7668A", "C7690T", "G7701A", "T7722C", "T7748C", "A7918G", "G8105A", "G8181T", "G8280T", "A8432G", "C8491A", "C8543T", "T8567A", "T8603A", "C8741T", "G8931A", "A8932T", "G9015A", "C9108T", "G9117A"], "RT-p51": ["I178M", "S379C"], "RT-p66": ["I178M", "S379C"], "gp120": ["N5K", "Y145H", "K277Q", "A291T", "G293K", "-294I", "N323D", "-379N", "V468I"], "gp41": ["R122K", "S133N", "A268T", "C326F", "V329I"], "nef": ["T50E", "E197I"], "p17": ["G123R"], "rev": ["S86N"], "tat": ["A21P", "P58T", "S61G", "S62G"], "vif": ["F39L", "S116A"], "vpr": ["H45Y", "A89T"], "vpu": ["Y30C", "K32R", "L82M"]}, "labels": {"aa": "RT-p51: I178M, S379C; RT-p66: I178M, S379C; gp120: N5K, Y145H, K277Q, A291T, G293K, -294I, N323D, -379N, V468I; gp41: R122K, S133N, A268T, C326F, V329I; nef: T50E, E197I; p17: G123R; rev: S86N; tat: A21P, P58T, S61G, S62G; vif: F39L, S116A; vpr: H45Y, A89T; vpu: Y30C, K32R, L82M"}}, "children": [{"name": "D_NODE_0000017", "node_attrs": {"div": 0.06933999999999998, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A491G", "C641A", "G755A", "T852A", "A899G", "A1079G", "C1169T", "G1394A", "A1664G", "G1794A", "C2353T", "T2499C", "A2818G", "A3293G", "A3616G", "T4039G", "T5147A", "G5359C", "A5556G", "C5688T", "T5870-", "T5871-", "A6177-", "A6197-", "-6224G", "G6935A", "-6956A", "-6963G", "-6971A", "-6972A", "-6974A", "-6979A", "-6980G", "-6983A", "C7016A", "T7106A", "T7130C", "A7152C", "G7158A", "-7162G", "A7532C", "T7554G", "A7572G", "A7590C", "C7702A", "A7711G", "A7742C", "T7852G", "G7915A", "C8286G", "A8370-", "A8490G", "T8492G", "A8537G", "G8595T", "T8701A", "A8886G"], "RT-p51": ["I135T", "T400A"], "RT-p66": ["I135T", "T400A"], "gp120": ["L6-", "-106A", "-107K", "N272S", "E309Q", "L388I", "N435D"], "gp41": ["K77Q", "I84S", "K90R", "N96T", "K147Q", "A328G"], "nef": ["D24E", "V85L"], "p17": ["D102E"], "p24": ["S41T"], "pro": ["L63P"], "rev": ["K14R", "A15V"], "vif": ["H187R"], "vpr": ["Y15N", "R85P"]}, "labels": {"aa": "RT-p51: I135T, T400A; RT-p66: I135T, T400A; gp120: L6-, -106A, -107K, N272S, E309Q, L388I, N435D; gp41: K77Q, I84S, K90R, N96T, K147Q, A328G; nef: D24E, V85L; p17: D102E; p24: S41T; pro: L63P; rev: K14R, A15V; vif: H187R; vpr: Y15N, R85P"}}, "children": [{"name": "AF484514", "node_attrs": {"div": 0.10608999999999999, "accession": "AF484514", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1998.0}, "Strain_name": {"value": "98UG57143"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "G395A", "C399A", "A428G", "A435C", "G455A", "A461C", "A508G", "A513C", "A515C", "T536C", "A562G", "A569G", "A571T", "G579A", "C590A", "A605G", "G607A", "G608A", "A620G", "T635C", "A686G", "A704G", "A711G", "G740A", "G771T", "A774T", "T794C", "A833C", "A839G", "G956T", "T992G", "C1060G", "A1145G", "T1181C", "T1271G", "A1279G", "G1298A", "T1322C", "G1341T", "C1350A", "T1421C", "A1450G", "T1452G", "C1456T", "G1495A", "A1498G", "G1532A", "C1535T", "A1670G", "G1673C", "G1736A", "A1743G", "C1761A", "A1762T", "G1763A", "A1765C", "G1766A", "A1770G", "A1780G", "T1785C", "T1787A", "C1826A", "C1831T", "T1895C", "A1945G", "T1978C", "T2005C", "G2027A", "T2077A", "C2080A", "C2083T", "T2101C", "G2134A", "C2149T", "A2215G", "G2224A", "A2240C", "T2269C", "G2305A", "A2380G", "G2456C", "T2479C", "A2519G", "G2530A", "G2548A", "T2597C", "C2605T", "T2608C", "A2629G", "T2668G", "G2725A", "C2749T", "T2803G", "G2821A", "A2825G", "A2828G", "A2829T", "C2831T", "A2839G", "A2881G", "G2902A", "C2941T", "A2956G", "C2975T", "A3019G", "C3023T", "A3037C", "A3099G", "G3221T", "A3226T", "C3376T", "C3394T", "G3438A", "T3472A", "T3497C", "T3530C", "G3562A", "A3604G", "G3643A", "A3651G", "T3668C", "A3745G", "T3746C", "A3769G", "G3770A", "G3859A", "A3874G", "T3946C", "C4021T", "G4046A", "C4076A", "T4085C", "A4130G", "C4140T", "T4165C", "C4180T", "A4228G", "T4412C", "C4428T", "A4531G", "G4539A", "T4540C", "G4677A", "T4712C", "C4776T", "A4950C", "C5050A", "T5084G", "A5146G", "A5161T", "T5182C", "T5197G", "A5213G", "T5214G", "A5236G", "T5239C", "G5276A", "A5277T", "A5282C", "A5336C", "C5397A", "T5430C", "A5431G", "G5496A", "A5535C", "A5548C", "C5552A", "C5559T", "C5569T", "A5581C", "C5614T", "C5653T", "A5716G", "G5717A", "A5718G", "C5727T", "G5781T", "T5788C", "C5795G", "G5811C", "G5869-", "A5907G", "A5915G", "C5916A", "T5948G", "C6010T", "A6024C", "A6040T", "A6043G", "C6046T", "C6052T", "T6096A", "C6097A", "T6154G", "T6171-", "A6173-", "A6176-", "T6178-", "A6182-", "C6183-", "T6184-", "A6185-", "A6188-", "A6191-", "A6192-", "T6193-", "-6203G", "-6204C", "-6205T", "-6206C", "-6207A", "-6208A", "-6209G", "-6210G", "-6211G", "-6212G", "-6213A", "-6214A", "A6215C", "-6216T", "-6217G", "G6218A", "A6219T", "-6221A", "-6222A", "-6223G", "-6225A", "A6229C", "T6252C", "A6261T", "A6275C", "A6278C", "C6281A", "T6285C", "C6287T", "G6311T", "A6320C", "G6323A", "A6332T", "G6345T", "C6364T", "G6368A", "A6395T", "A6442G", "A6464C", "A6490G", "G6575A", "G6577C", "C6599A", "A6605G", "C6619A", "C6632T", "A6636C", "T6637G", "T6641G", "C6642G", "T6645C", "A6647C", "A6669C", "A6685G", "T6688C", "-6689A", "T6719C", "A6723T", "A6725G", "C6729A", "A6730C", "A6733G", "G6771A", "G6776A", "G6779C", "T6787C", "A6833-", "A6834-", "C6835-", "G6838C", "A6839C", "C6840A", "A6841G", "A6856T", "C6857T", "A6952C", "-6957A", "-6958T", "A6962G", "-6968G", "-6969T", "-6970A", "-6973T", "-6975G", "-6976T", "-6977A", "-6978C", "-6981A", "-6982T", "-6984C", "-6985A", "A6986G", "A6987T", "T6988A", "-6993G", "-6994T", "C7008T", "G7056A", "T7087A", "A7101T", "C7102G", "C7107A", "A7108T", "A7155G", "A7157G", "-7160G", "C7171T", "A7189G", "G7190A", "G7197A", "C7201T", "A7231G", "A7234G", "A7269C", "A7273G", "A7279G", "C7313T", "A7322T", "G7399A", "C7625A", "C7651T", "A7677C", "G7689A", "A7701C", "G7754C", "T7775C", "A7840G", "G7852A", "G7868A", "C7931T", "G7947A", "A8011C", "C8071T", "A8143G", "G8219A", "C8232T", "T8257C", "G8264C", "A8305G", "C8306A", "A8364C", "G8368-", "T8369-", "A8372G", "T8374C", "A8378G", "G8385A", "A8399G", "T8414G", "A8426G", "C8460T", "C8488T", "A8528G", "G8531T", "C8552T", "G8588A", "C8590G", "C8609T", "A8636T", "C8688A", "G8717T", "A8739C", "T8740C", "G8778A", "A8811G", "G8846A", "G8848A", "A8885G", "G8893A", "A8906G", "A8923T", "T8939C", "G8942A", "G8955A", "C8971A", "G9007A", "T9019G", "C9039T", "T9040C", "G9087T", "G9095A", "A9099G"], "INT": ["A91T", "L101I", "S119G", "T122I", "T218I", "S255N"], "RT-p51": ["D121H", "I142V", "I244V", "K245V", "P294S", "D335G", "A376S", "Q377H", "T403I"], "RT-p66": ["D121H", "I142V", "I244V", "K245V", "P294S", "D335G", "A376S", "Q377H", "M403I", "R448K", "S468P", "V559I"], "gp120": ["K18R", "T21D", "S32A", "E57A", "I81K", "N108E", "-109D", "T110M", "E125-", "M126-", "I133T", "K141Q", "K142Q", "Q143K", "V144A", "H145Y", "V153L", "I156L", "D157N", "N159T", "R164I", "A172T", "K204Q", "E241N", "L249I", "L260F", "N261T", "S263G", "V264A", "T265Q", "Y290F", "T291A", "T292N", "S306N", "A308T", "N327-", "T329Q", "K334N", "P335S", "S370G", "-372V", "-374T", "-375D", "-376T", "-377V", "N379S", "T380I", "G401E", "N416M", "S418N", "A432N", "N433T", "N434S", "S436E", "D446N", "R448K", "K472T"], "gp41": ["M7L", "L108I", "D125A", "G129D", "N133T", "E151Q", "A189T", "L210F", "G215E", "A306T", "A310V", "V321L"], "nef": ["S8R", "S9M", "I10A", "V11-", "A15T", "T23A", "H40Y", "A49V", "E62Q", "A83G", "E98D", "H116N", "Q125H", "I133P", "V146I", "T157A", "M168I", "C169N", "R184K", "K194M", "I197M", "D205N"], "p17": ["V7I", "I34L", "E42D", "K58R", "I60L", "K76R", "Y79F", "V82I", "R91K", "S126G"], "p2": ["S10V", "A12-"], "p24": ["A14S", "E75D", "H87Q", "T110S", "D180E", "N183S", "A204S", "P207T"], "p6": ["T22A", "Q28I", "E29A", "K31E", "E34G", "Y36Q", "S51L"], "p7": ["R10K", "K11R"], "pro": ["L10I", "V77I"], "rev": ["D7A", "L13I", "P28L", "I55L", "S99G"], "tat": ["N7K", "R19G", "R53S", "T58P", "P59H", "H65Y", "I69L", "D80N"], "vif": ["V31I", "K122Q", "T155K", "H192L"], "vpr": ["I37G", "E58I", "I60L", "Q77H"], "vpu": ["P3S", "R37E", "E58D", "E63G"]}, "labels": {"aa": "INT: A91T, L101I, S119G, T122I, T218I, S255N; RT-p51: D121H, I142V, I244V, K245V, P294S, D335G, A376S, Q377H, T403I; RT-p66: D121H, I142V, I244V, K245V, P294S, D335G, A376S, Q377H, M403I, R448K, S468P, V559I; gp120: K18R, T21D, S32A, E57A, I81K, N108E, -109D, T110M, E125-, M126-, I133T, K141Q, K142Q, Q143K, V144A, H145Y, V153L, I156L, D157N, N159T, R164I, A172T, K204Q, E241N, L249I, L260F, N261T, S263G, V264A, T265Q, Y290F, T291A, T292N, S306N, A308T, N327-, T329Q, K334N, P335S, S370G, -372V, -374T, -375D, -376T, -377V, N379S, T380I, G401E, N416M, S418N, A432N, N433T, N434S, S436E, D446N, R448K, K472T; gp41: M7L, L108I, D125A, G129D, N133T, E151Q, A189T, L210F, G215E, A306T, A310V, V321L; nef: S8R, S9M, I10A, V11-, A15T, T23A, H40Y, A49V, E62Q, A83G, E98D, H116N, Q125H, I133P, V146I, T157A, M168I, C169N, R184K, K194M, I197M, D205N; p17: V7I, I34L, E42D, K58R, I60L, K76R, Y79F, V82I, R91K, S126G; p2: S10V, A12-; p24: A14S, E75D, H87Q, T110S, D180E, N183S, A204S, P207T; p6: T22A, Q28I, E29A, K31E, E34G, Y36Q, S51L; p7: R10K, K11R; pro: L10I, V77I; rev: D7A, L13I, P28L, I55L, S99G; tat: N7K, R19G, R53S, T58P, P59H, H65Y, I69L, D80N; vif: V31I, K122Q, T155K, H192L; vpr: I37G, E58I, I60L, Q77H; vpu: P3S, R37E, E58D, E63G"}}}, {"name": "D_NODE_0000018", "node_attrs": {"div": 0.07598999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G224A", "A301G", "C456T", "G644A", "A1503G", "A1543G", "G1687A", "A1804G", "A1894G", "G1906A", "A2210G", "A2929C", "A3080G", "G3238A", "G3473A", "G3477A", "T3977C", "C4321T", "G4856A", "T4967A", "G5179A", "T5451C", "T5484A", "G5599A", "C5602T", "T5621A", "A5659C", "T5697G", "G5784A", "-5870A", "-5871A", "-6170G", "T6171C", "-6174G", "-6179A", "-6180A", "C6183A", "-6190G", "C6336G", "C6397T", "C6457A", "A6525G", "A6734G", "T6808A", "A6836C", "G6871A", "-6968T", "-6969G", "-6970G", "-6975T", "-6984A", "-6993C", "-6994A", "-6995G", "-7001A", "-7003T", "-7004G", "-7005A", "C7014T", "C7102T", "A7126C", "C7134T", "A7138G", "T7165C", "G7508A", "C7801A", "G7965A", "A7977G", "C8213T", "C8221T", "G8276T", "C8277T", "A8388G", "T8440C", "C8702T", "G8933A", "T8947A"], "RT-p51": ["T39A", "E40D", "M178I", "Q278H", "I329V"], "RT-p66": ["T39A", "E40D", "M178I", "Q278H", "I329V", "D460N", "R461K"], "gp120": ["-6K", "N160T", "K224R", "D251N", "I256L", "I294V", "N328Q", "-372W", "-384D", "-385T"], "gp41": ["V69I", "E110D", "G221E", "E225G", "L304F", "A325F"], "nef": ["I16V", "V33A", "F202Y"], "p6": ["S3N", "K42R"], "p7": ["I13V", "K26R"], "pro": ["M36I"], "rev": ["D11E"], "tat": ["E86K"], "vif": ["H127Q"], "vpu": ["V5E", "I18L", "C30W"]}, "labels": {"aa": "RT-p51: T39A, E40D, M178I, Q278H, I329V; RT-p66: T39A, E40D, M178I, Q278H, I329V, D460N, R461K; gp120: -6K, N160T, K224R, D251N, I256L, I294V, N328Q, -372W, -384D, -385T; gp41: V69I, E110D, G221E, E225G, L304F, A325F; nef: I16V, V33A, F202Y; p6: S3N, K42R; p7: I13V, K26R; pro: M36I; rev: D11E; tat: E86K; vif: H127Q; vpu: V5E, I18L, C30W"}}, "children": [{"name": "AJ320484", "node_attrs": {"div": 0.10852999999999999, "accession": "AJ320484", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1992.0}, "Strain_name": {"value": "92UG001"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G215A", "A265G", "G407A", "A428G", "T467C", "A537G", "A571T", "A605G", "A620G", "A660G", "A661C", "G677A", "G762A", "A878G", "T884C", "G908A", "A914G", "A932G", "G987C", "T988C", "T992G", "A1022G", "T1058C", "A1097G", "A1101G", "A1115G", "A1142G", "A1199T", "C1220T", "G1268A", "T1289C", "G1313A", "T1344C", "C1453T", "A1454G", "C1456G", "A1461G", "T1462C", "G1476A", "C1502T", "G1552A", "C1556T", "A1586C", "G1589T", "G1673C", "G1685A", "G1763A", "G1773A", "A1776C", "T1783C", "G1784A", "T1785C", "T1787A", "C1831T", "A1834C", "A1903C", "T1999C", "C2003T", "G2027A", "A2215C", "G2224A", "A2273G", "A2398G", "G2459A", "A2460T", "T2479A", "A2510G", "G2518A", "A2579T", "G2704T", "T2735C", "C2739T", "A2830G", "A2919G", "G2925A", "G2984A", "G3015A", "A3127G", "G3170A", "T3303A", "G3307A", "T3355C", "T3358C", "A3398C", "T3445C", "G3631A", "A3651G", "G3694A", "A3733G", "A3748G", "C3773T", "A3874G", "T4042C", "C4076A", "G4145T", "C4159T", "C4180T", "T4202C", "A4228G", "G4353A", "A4407C", "G4409A", "C4428T", "A4526C", "C4534T", "C4569T", "A4643C", "A4646T", "C4761T", "A4769C", "T4799C", "G4835A", "G4892A", "A4968T", "T4988A", "T5018C", "C5050A", "A5055G", "G5060A", "T5062C", "A5146G", "A5155G", "A5191G", "C5203T", "A5225G", "C5227A", "A5233G", "C5263A", "A5282C", "T5292C", "C5359A", "A5370C", "T5382C", "A5385C", "C5398T", "A5422T", "C5437T", "A5448T", "G5482A", "T5483A", "C5514A", "A5548G", "C5551A", "A5555C", "G5558A", "G5561A", "A5594G", "A5601C", "A5652G", "T5670G", "T5679C", "G5699A", "G5702A", "T5704A", "A5722G", "A5787T", "T5788A", "T5789G", "T5791G", "C5792A", "A5793G", "C5795A", "C5797T", "T5799A", "G5800T", "T5801C", "G5802T", "G5803-", "A5804-", "G5805-", "G5809C", "G5810T", "G5811T", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5853A", "A5866G", "T5884G", "C5917A", "C5964T", "A6015G", "A6094C", "-6172A", "-6175G", "-6177G", "T6178G", "-6181T", "A6182G", "T6184G", "-6186C", "-6187T", "-6189G", "-6194A", "-6195A", "-6196T", "-6197A", "-6198T", "-6199T", "-6200A", "-6201C", "-6202A", "-6203G", "-6204G", "-6205A", "-6206A", "-6207T", "-6208G", "-6209G", "-6210A", "-6211A", "-6212A", "-6213A", "-6214C", "-6216A", "-6217T", "G6220T", "-6221C", "-6222A", "-6223A", "G6224A", "-6225T", "G6260A", "G6267T", "A6329G", "A6333C", "G6339A", "T6340C", "A6456G", "C6481A", "T6511C", "G6532A", "T6541C", "A6620C", "A6647G", "T6652C", "A6671T", "T6676C", "C6678T", "T6688A", "-6689A", "T6690C", "C6692T", "A6693C", "C6708A", "T6719C", "A6732G", "T6738C", "A6739G", "C6752A", "C6758T", "T6763C", "G6773A", "G6774A", "A6780G", "A6799G", "T6826C", "A6865G", "T6946C", "A6950G", "-6957A", "-6958T", "A6959G", "T6961C", "-6973T", "-6981G", "-6982G", "-6985T", "-6996G", "-6997A", "-6998G", "-6999A", "-7000T", "-7002A", "-7006G", "A7015T", "T7087C", "C7094T", "T7095G", "A7096G", "A7106G", "A7133G", "A7148G", "A7149G", "A7151G", "T7153A", "A7157G", "-7160C", "G7181C", "G7182A", "A7225G", "G7239A", "G7399A", "G7423T", "G7440T", "T7561G", "C7625A", "G7633C", "T7691G", "A7701G", "G7754C", "G7846A", "G7868A", "C7931T", "T8007C", "G8030A", "C8147A", "C8156T", "T8181G", "A8196C", "T8218C", "A8228G", "A8297G", "G8304C", "T8332G", "G8368A", "T8369A", "T8371-", "A8372-", "G8373A", "A8378G", "A8396C", "A8403C", "G8404A", "G8412A", "A8413G", "C8552T", "A8567G", "A8580G", "A8597T", "G8647A", "G8648C", "C8652A", "T8666A", "G8717A", "T8747C", "A8762T", "T8786G", "A8793G", "C8812A", "G8814A", "A8879G", "A8934C", "A8954G", "C8971T", "T8974G", "T9019G", "T9029A", "A9041G", "A9111G"], "INT": ["L101I", "A124S", "Y143H", "G193E", "K211T", "E212K", "T218I", "I251L", "A265V"], "RT-p51": ["I60V", "E122I", "T139A", "S162C", "E203D", "F214L", "T215I", "K275R", "R277K", "E297K", "R307K", "G359S", "T403K", "I435L"], "RT-p66": ["I60V", "E122I", "T139A", "S162C", "E203D", "F214L", "T215I", "K275R", "R277K", "E297K", "R307K", "G359S", "M403K", "I435L"], "gp120": ["A37V", "Q54R", "K107R", "N108R", "-109N", "T110E", "-111T", "-112R", "-113N", "-114N", "-115I", "-116T", "-117G", "-118M", "-119E", "-120N", "-121N", "-122D", "-123Q", "-124I", "V136K", "R138I", "N159D", "T161S", "S162N", "S181T", "N201R", "T265E", "S272Y", "N273Y", "T275Q", "R276I", "Q277-", "S278R", "I279Q", "H280R", "I281T", "-282S", "-283I", "P285Q", "K293R", "I295T", "Q300K", "H302Y", "G307K", "Q309G", "T366A", "N369D", "S373N", "-374I", "-376G", "-377N", "-382G", "-383S", "T387I", "L414W", "S418A", "T427V", "A432G", "N433A", "N437Q", "G443Q", "R462K"], "gp41": ["Q40H", "R46M", "L108I", "L130V", "N133R", "E151Q", "N166K", "A189T", "L210F", "I235T", "A243T", "L282I", "I293S", "N298T", "I309V", "I332V", "R334T"], "nef": ["S9K", "I10-", "V11I", "E18D", "R21Q", "E24S", "T80A", "L85F", "W102Y", "Q104K", "D108E", "K151E", "T157N", "E158K", "C169S", "K198Q"], "p17": ["I68V", "Y79F", "N109A"], "p2": ["S10L", "A11N", "A12G", "I13A"], "p24": ["V11I", "L15I", "V86P", "H87Q", "I124V"], "p6": ["D32N", "K33Q", "L35P", "Y36Q", "S51L", "Q52P"], "p7": ["G4S", "R29K", "R41S"], "pro": ["E35D", "H69Y", "V77I"], "rev": ["V15T", "V16I", "P28L", "S61N", "P100H", "S103F", "D111E", "E116D"], "tat": ["S16C", "P21S", "K24N", "V36K", "T58A", "P59T", "Q60P", "G61D", "G62D"], "vif": ["R19S", "E61D", "I128L", "D134E", "T155K", "K157E", "I159T", "N190S"], "vpr": ["S41G", "I60L", "I63T", "P85Q", "T89P", "S93P", "S94R"], "vpu": ["R31K", "R32K", "L33I", "I39V", "E60D", "L61R", "S62E", "V65S", "E66-", "G68L", "-69V", "-70E", "-71M", "-72G", "M82I"]}, "labels": {"aa": "INT: L101I, A124S, Y143H, G193E, K211T, E212K, T218I, I251L, A265V; RT-p51: I60V, E122I, T139A, S162C, E203D, F214L, T215I, K275R, R277K, E297K, R307K, G359S, T403K, I435L; RT-p66: I60V, E122I, T139A, S162C, E203D, F214L, T215I, K275R, R277K, E297K, R307K, G359S, M403K, I435L; gp120: A37V, Q54R, K107R, N108R, -109N, T110E, -111T, -112R, -113N, -114N, -115I, -116T, -117G, -118M, -119E, -120N, -121N, -122D, -123Q, -124I, V136K, R138I, N159D, T161S, S162N, S181T, N201R, T265E, S272Y, N273Y, T275Q, R276I, Q277-, S278R, I279Q, H280R, I281T, -282S, -283I, P285Q, K293R, I295T, Q300K, H302Y, G307K, Q309G, T366A, N369D, S373N, -374I, -376G, -377N, -382G, -383S, T387I, L414W, S418A, T427V, A432G, N433A, N437Q, G443Q, R462K; gp41: Q40H, R46M, L108I, L130V, N133R, E151Q, N166K, A189T, L210F, I235T, A243T, L282I, I293S, N298T, I309V, I332V, R334T; nef: S9K, I10-, V11I, E18D, R21Q, E24S, T80A, L85F, W102Y, Q104K, D108E, K151E, T157N, E158K, C169S, K198Q; p17: I68V, Y79F, N109A; p2: S10L, A11N, A12G, I13A; p24: V11I, L15I, V86P, H87Q, I124V; p6: D32N, K33Q, L35P, Y36Q, S51L, Q52P; p7: G4S, R29K, R41S; pro: E35D, H69Y, V77I; rev: V15T, V16I, P28L, S61N, P100H, S103F, D111E, E116D; tat: S16C, P21S, K24N, V36K, T58A, P59T, Q60P, G61D, G62D; vif: R19S, E61D, I128L, D134E, T155K, K157E, I159T, N190S; vpr: S41G, I60L, I63T, P85Q, T89P, S93P, S94R; vpu: R31K, R32K, L33I, I39V, E60D, L61R, S62E, V65S, E66-, G68L, -69V, -70E, -71M, -72G, M82I"}}}, {"name": "JX236673", "node_attrs": {"div": 0.12366999999999999, "accession": "JX236673", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 2007.0}, "Strain_name": {"value": "p191882"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C227T", "A304T", "A370G", "A388G", "G413C", "A435C", "T495G", "C496A", "A500G", "A513C", "G520C", "C522G", "A523C", "G534T", "C540A", "G542C", "C558A", "A562G", "G579C", "T593C", "G603A", "G615A", "A645T", "A647G", "G683A", "G703A", "C713T", "A735G", "C765T", "C767T", "G771A", "C772A", "A774T", "A810G", "A878C", "C879G", "A880C", "A881T", "C950T", "A959G", "C978A", "G989A", "C1013T", "T1063C", "A1088T", "T1100C", "C1103T", "A1109G", "C1136T", "T1143C", "T1148C", "A1193G", "T1262C", "G1302A", "C1330T", "C1342G", "G1346A", "C1350G", "G1388A", "G1424A", "A1442G", "G1455A", "C1456A", "T1457A", "A1473G", "G1496A", "T1501A", "G1532A", "C1556A", "G1568A", "A1595C", "G1766A", "T1791C", "T1796C", "C1826A", "A1835G", "A1900G", "A1926G", "A1981C", "A1988G", "C1996T", "T2005G", "G2117A", "G2134A", "A2198G", "A2215T", "A2230G", "G2241A", "A2254G", "T2323C", "A2329G", "G2341A", "C2356T", "A2374G", "A2380G", "G2462A", "A2572C", "A2626C", "A2693G", "G2727A", "T2770G", "G2869A", "T2873C", "G2878A", "C2899T", "G2902A", "T2905C", "G2921A", "T2922C", "G2969A", "A2986G", "A3019G", "C3023T", "A3028G", "A3037G", "A3099G", "C3100T", "A3136G", "G3154A", "G3166A", "T3172A", "C3232T", "T3253C", "A3304G", "T3355G", "T3364G", "G3388T", "C3475T", "A3489G", "G3494A", "A3502G", "C3508T", "G3529A", "T3544C", "G3562A", "T3567C", "T3602C", "T3628C", "G3643A", "A3674C", "G3695A", "C3712T", "G3770A", "A3775G", "G3781A", "A3808G", "G3868A", "T3946C", "C3995A", "G3997A", "G4039A", "C4123T", "T4147A", "T4153A", "C4177T", "A4181C", "A4213G", "T4216C", "T4234C", "T4316C", "C4381T", "A4407G", "G4642A", "A4652C", "T4656C", "T4670C", "G4677A", "A4687G", "C4692A", "C4721A", "C4726T", "A4775G", "A4820T", "C4827T", "T4868C", "C4871T", "A4968G", "T5027C", "T5237C", "T5239C", "A5370G", "C5412T", "A5431G", "C5445T", "A5462G", "C5479T", "A5481C", "G5482C", "C5511A", "C5530A", "G5532A", "A5533G", "C5559T", "G5565A", "C5567T", "A5581C", "C5584T", "C5614G", "C5653G", "T5654C", "A5689G", "G5700A", "A5708G", "G5711A", "A5828T", "A5840T", "G5845A", "T5860A", "G5869A", "C5916A", "C5917T", "T5923C", "T5932C", "T5948G", "A5957G", "T5971C", "G6023A", "A6044G", "C6115T", "-6172C", "-6175T", "-6177C", "-6181G", "-6186T", "-6187G", "-6189C", "T6193A", "-6194G", "-6195G", "-6214A", "-6216T", "-6217G", "-6225G", "G6232A", "T6242A", "A6251G", "A6261T", "T6271C", "A6275C", "G6280A", "C6281A", "C6287G", "G6303A", "A6333G", "G6345C", "C6386A", "G6392A", "C6396A", "G6403A", "T6436C", "A6442G", "A6465T", "T6472A", "C6482A", "C6483A", "A6484G", "A6488T", "A6490C", "A6544G", "C6559T", "C6603T", "T6613A", "A6620T", "G6631T", "T6634C", "G6644A", "A6648T", "A6649G", "A6669C", "A6685C", "-6689T", "A6695C", "C6713A", "A6731G", "A6733T", "G6774C", "G6776A", "C6777A", "G6779C", "A6790C", "A6798T", "A6801G", "A6814T", "G6818A", "G6819C", "T6849G", "A6854G", "A6855C", "A6859G", "A6926G", "T6949C", "-6957T", "-6958A", "T6964C", "-6973A", "A6974G", "-6976C", "-6977G", "-6978A", "A6979G", "-6981A", "-6982T", "A6983G", "-6985A", "A6990G", "-6996A", "-6997G", "-6998A", "-6999T", "-7000A", "-7002G", "-7006T", "A7013G", "A7015G", "C7019T", "G7056A", "T7081C", "C7084T", "G7088A", "A7089G", "C7094G", "G7132A", "A7133C", "T7144A", "C7152G", "T7153G", "A7155C", "-7160G", "A7164C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "T7217C", "A7269G", "G7276A", "C7313T", "G7357A", "T7373C", "G7375A", "C7452T", "G7459A", "A7461G", "T7462A", "T7622A", "A7629G", "G7633T", "C7651T", "G7658C", "C7678A", "A7702T", "G7717A", "A7747G", "C7748T", "T7751C", "G7759A", "T7789C", "A7799C", "T7880G", "T7921G", "C7938T", "G7947A", "T7968C", "G7998A", "A8002G", "C8026A", "A8093C", "A8098G", "C8103T", "A8104G", "T8112C", "G8170A", "A8172T", "A8180C", "A8188G", "G8194A", "T8197G", "T8203C", "G8219T", "G8245A", "G8255C", "T8268C", "T8287C", "T8290C", "A8294C", "G8323T", "T8332A", "A8338G", "T8348A", "G8349A", "A8354G", "-8370G", "T8375G", "T8414A", "A8426G", "G8492A", "T8495C", "C8504T", "T8505A", "G8506A", "T8507G", "G8534C", "T8543A", "T8558C", "A8564G", "A8573G", "C8590G", "T8640A", "A8643G", "A8655C", "C8688A", "T8740C", "A8762G", "G8772C", "C8775T", "T8779A", "G8798A", "A8803C", "T8832C", "G8834A", "A8847T", "A8859G", "T8860C", "G8861A", "A8885G", "G8893A", "A8894G", "A8906G", "A8931G", "T8932C", "C8937T", "C8999-", "C9028T"], "INT": ["L74I", "K136Q", "F181L", "K211R"], "RT-p51": ["V8I", "T35A", "R49K", "D123N", "E177D", "T200A", "R211K", "V276T", "V292I", "D335G", "M357I", "T403M", "K431N"], "RT-p66": ["V8I", "T35A", "R49K", "D123N", "E177D", "T200A", "R211K", "V276T", "V292I", "D335G", "M357I", "K431N", "K465R", "V467I", "L491S", "S519N", "K527Q", "A534T", "V559I"], "gp120": ["T21N", "S32A", "T35A", "E57K", "N64D", "-109M", "-111K", "-112G", "-113M", "-114E", "-124G", "M126I", "S130T", "I133V", "K141Q", "Q143K", "H145D", "R150K", "N159S", "T161Q", "R164T", "P178T", "V180I", "S181N", "N201K", "K204M", "N206K", "P210K", "K212Y", "T250I", "Q259H", "V264I", "T265M", "Q277H", "I279L", "I281L", "Q287K", "L289F", "K293D", "G307A", "A308K", "K312N", "Q315L", "Q316R", "K320N", "G322T", "I332S", "K334A", "N358D", "N368I", "S373K", "-374V", "-375E", "-376D", "-377E", "N379S", "-381E", "-382I", "-383R", "T387V", "P389S", "G401E", "E412R", "L414V", "S418T", "T427L", "A432T", "N433-", "D435R", "S436T", "K472R"], "gp41": ["A50V", "H53R", "S107T", "D109G", "E119Q", "D125E", "N166Q", "L193V", "F206L", "A212V", "G215E", "I222T", "G232D", "F241L", "I264L", "A267V", "I270T", "Q290L", "I293L", "N298K", "A306S", "V318L", "V322A", "N331H", "L340F"], "nef": ["G3S", "I10V", "C55K", "A83G", "L100I", "I101V", "K105Q", "H116N", "I133T", "E144Q", "V146E", "E154A", "M173A", "R184K", "I197A", "H199Y"], "p17": ["K12R", "K18R", "K26N", "I34L", "S54E", "I60L", "G62A", "Q63A", "A67S", "Q69N", "L75I", "K76R", "V82L", "E90K", "V94I", "I104L", "R123K"], "p2": ["A11K"], "p24": ["I2V", "H12Y", "A14N", "I27V", "Q50A", "L83I", "L111P", "V191I", "T200I", "A204G", "P207A"], "p7": ["R3G", "I12N"], "pro": ["L10I", "I13V", "K43R", "Q61H", "I64V", "H69Q"], "rev": ["S5R", "G6E", "R17K", "L18F", "I52V", "L60I", "N82T", "N84D", "N86D", "A108T", "D111A", "T114A", "E116K", "*117E"], "tat": ["R19G", "K29R", "Q35Y", "V36L", "R53G", "A64V", "I69L", "P70S", "P77S", "D80N", "*87Q"], "vif": ["R19K", "K22N", "V31I", "K34R", "Q36K", "D45E", "P47L", "E78D", "I128V", "R187Q"], "vpr": ["Y45H", "T89A"], "vpu": ["P3A", "L16A", "I28V", "K34R", "R35K", "E63A", "H74L", "D78V", "D80N"]}, "labels": {"aa": "INT: L74I, K136Q, F181L, K211R; RT-p51: V8I, T35A, R49K, D123N, E177D, T200A, R211K, V276T, V292I, D335G, M357I, T403M, K431N; RT-p66: V8I, T35A, R49K, D123N, E177D, T200A, R211K, V276T, V292I, D335G, M357I, K431N, K465R, V467I, L491S, S519N, K527Q, A534T, V559I; gp120: T21N, S32A, T35A, E57K, N64D, -109M, -111K, -112G, -113M, -114E, -124G, M126I, S130T, I133V, K141Q, Q143K, H145D, R150K, N159S, T161Q, R164T, P178T, V180I, S181N, N201K, K204M, N206K, P210K, K212Y, T250I, Q259H, V264I, T265M, Q277H, I279L, I281L, Q287K, L289F, K293D, G307A, A308K, K312N, Q315L, Q316R, K320N, G322T, I332S, K334A, N358D, N368I, S373K, -374V, -375E, -376D, -377E, N379S, -381E, -382I, -383R, T387V, P389S, G401E, E412R, L414V, S418T, T427L, A432T, N433-, D435R, S436T, K472R; gp41: A50V, H53R, S107T, D109G, E119Q, D125E, N166Q, L193V, F206L, A212V, G215E, I222T, G232D, F241L, I264L, A267V, I270T, Q290L, I293L, N298K, A306S, V318L, V322A, N331H, L340F; nef: G3S, I10V, C55K, A83G, L100I, I101V, K105Q, H116N, I133T, E144Q, V146E, E154A, M173A, R184K, I197A, H199Y; p17: K12R, K18R, K26N, I34L, S54E, I60L, G62A, Q63A, A67S, Q69N, L75I, K76R, V82L, E90K, V94I, I104L, R123K; p2: A11K; p24: I2V, H12Y, A14N, I27V, Q50A, L83I, L111P, V191I, T200I, A204G, P207A; p7: R3G, I12N; pro: L10I, I13V, K43R, Q61H, I64V, H69Q; rev: S5R, G6E, R17K, L18F, I52V, L60I, N82T, N84D, N86D, A108T, D111A, T114A, E116K, *117E; tat: R19G, K29R, Q35Y, V36L, R53G, A64V, I69L, P70S, P77S, D80N, *87Q; vif: R19K, K22N, V31I, K34R, Q36K, D45E, P47L, E78D, I128V, R187Q; vpr: Y45H, T89A; vpu: P3A, L16A, I28V, K34R, R35K, E63A, H74L, D78V, D80N"}}}]}]}, {"name": "D_NODE_0000019", "node_attrs": {"div": 0.06655, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G424A", "A518G", "G1016A", "T1452G", "C1745A", "G2473A", "A2629G", "A2972G", "T3303C", "G3694A", "C5478T", "T5491A", "-6174A", "-7001A", "-7003T", "A7640G", "G8191A", "A8490C"], "RT-p51": ["I293V"], "RT-p66": ["I293V", "M403T"], "gp120": ["-111N", "V136E", "I279T"], "nef": ["E50H"], "p17": ["R30K"], "p24": ["L15I"], "rev": ["E115K"], "tat": ["L39I"], "vpr": ["I37V"]}, "labels": {"aa": "RT-p51: I293V; RT-p66: I293V, M403T; gp120: -111N, V136E, I279T; nef: E50H; p17: R30K; p24: L15I; rev: E115K; tat: L39I; vpr: I37V"}}, "children": [{"name": "MF373180", "node_attrs": {"div": 0.12963, "accession": "MF373180", "clade_membership": {"value": "D"}, "country": {"value": "SE"}, "date": {"value": 2012.0}, "Strain_name": {"value": "077UG"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "C362A", "G365C", "G367A", "T373A", "C399A", "C471G", "A491G", "T506C", "A516C", "G520C", "G534T", "G542A", "A548G", "A592T", "G614T", "A632G", "T635G", "C641G", "G644A", "A645T", "G648T", "A656G", "C662G", "A663G", "A670G", "C713T", "G791A", "C872T", "T884C", "C890T", "C893A", "G908A", "T983C", "T992G", "C1013A", "A1025G", "C1061T", "T1064G", "A1089G", "G1090C", "A1097G", "C1098T", "A1112G", "C1118A", "T1121C", "C1169T", "C1178T", "G1256A", "T1289C", "G1313A", "C1334T", "G1354C", "G1355C", "A1412G", "T1421G", "A1449C", "T1451G", "C1460A", "A1461G", "G1474A", "G1488A", "G1496A", "A1498G", "C1517T", "G1553A", "T1559A", "G1562A", "A1565G", "A1643G", "C1676T", "G1734-", "A1735-", "G1736-", "T1741A", "A1742G", "C1744T", "-1746A", "-1747A", "-1748C", "T1752C", "G1766A", "A1771C", "A1776C", "A1832T", "G1840A", "C1853T", "T2013A", "G2027A", "A2059G", "G2068A", "G2074A", "G2156A", "A2170G", "G2173A", "A2176G", "C2195T", "A2197G", "C2211A", "A2254T", "C2281T", "A2289G", "A2300-", "C2301-", "T2302-", "A2314G", "C2393A", "A2400T", "A2455G", "G2456T", "C2503T", "G2509A", "A2566G", "A2602G", "T2607A", "A2637G", "T2638C", "T2657C", "A2658T", "G2683A", "C2720T", "C2756T", "A2828G", "A2830G", "A2842G", "A2881G", "A2896C", "T2908C", "T2917C", "G2925A", "A2926G", "A2995G", "G3004A", "A3019G", "T3059G", "C3100A", "T3118C", "T3165A", "G3169A", "C3178T", "C3224T", "A3225T", "T3230G", "G3238A", 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"G8S", "K11R"], "pro": ["T12S", "L63P", "I72K", "V77I"], "rev": ["S8R", "D11E", "A15V", "P31S", "I55L", "E57Q", "L60I", "S61C", "S67P", "C85S", "S103P", "S106P", "D111G"], "tat": ["A64T", "P77L", "P81Q"], "vif": ["K22N", "K34R", "Q36T", "L39M", "P47H", "E61D", "H73N", "E78D", "R90K", "I128V", "T155K", "Q178H", "K179Q", "H183R", "H187R"], "vpr": ["E6S", "V37A", "Q86H"], "vpu": ["R31K", "K34R", "W41R", "R45I", "R47K", "E48K", "A50E", "D52N", "E63T", "V65M", "E66D", "D78N", "M82I"]}, "labels": {"aa": "INT: N17S, S119P, A125T, T206S, I208L, T210S, Q216R, K219Q, Y227F, N254R, D256E, S283G; RT-p51: V21I, T39K, E53D, K65R, T69-, L100I, K102M, D121Y, F171Y, Y181C, Y188L, H221Y, K245E, R277K, S322A, D335E, M357K, Q377L, C379G, T386I; RT-p66: V21I, T39K, E53D, K65R, T69-, L100I, K102M, D121Y, F171Y, Y181C, Y188L, H221Y, K245E, R277K, S322A, D335E, M357K, Q377L, C379G, T386I, S468P, L491P, S519N, V531I, N554S; gp120: E4Q, K18R, T21N, D29H, K34E, T35P, E36Q, P51L, I56M, E59L, Q75H, E78K, Q86H, T95S, T100P, N102H, -106I, -107C, N108E, -109G, T110N, -112T, -113N, -114G, -115N, -121N, -122E, -123T, -124I, E125D, I133A, R138K, K141V, K142A, Q143K, H145N, Q155P, N160D, A172T, V180I, S181T, K204N, K224R, R245K, E247K, L249I, T250S, L260F, S263T, T265R, N267T, H280R, L289I, H302Y, N304T, S306N, G307A, A308T, E309D, N311Y, K312S, T313M, Q316K, K319I, G322K, D323K, F325Y, N327-, T329K, I331E, K334D, P335S, I343V, K361N, S365T, W367L, N368G, S370E, -372T, S373T, -374K, -375N, -376R, -377G, N378G, T380-, T387P, L388I, C390W, W399G, Q400K, V402I, G403R, K404R, P410S, I411S, E412A, G413S, L414Q, N416C, C417*, N420T, I421V, T422P, T427A, R428G, A432K, N433D, N434A, S436D, N437S, G443E, D446N, R452S, S453N, V460T, R462K, L466I; gp41: L33V, R74S, K77R, K90R, N96A, D109E, E110N, N113G, D125Y, G129N, E148D, L191F, F241L, I293V, A306T, A310V, V321A, V322I, R324G, N331H, A343S; nef: G3S, I16V, R22N, D24A, A26T, V33A, R35Q, E38A, K39R, I43V, P53A, D54S, L87M, L91I, E98D, D108E, Y120F, I133T, A156N, T157I, E158K, G159-, N162S, M168G, C169S, M173T, E174D, I197L, F202Y, K204Q, D205N; p17: V7I, S9R, G11E, L13*, L46V, I61L, G62A, A67S, Y86F, E93D, D102E, I104L, E105*, N109K, K110E, K112R; p2: N9Q, I13V; p24: H87Q, S120A, P123S, G208A; p6: E19-, I21K, T22I, -23N, S25P, K31T, K33Q, T39A; p7: R3K, G8S, K11R; pro: T12S, L63P, I72K, V77I; rev: S8R, D11E, A15V, P31S, I55L, E57Q, L60I, S61C, S67P, C85S, S103P, S106P, D111G; tat: A64T, P77L, P81Q; vif: K22N, K34R, Q36T, L39M, P47H, E61D, H73N, E78D, R90K, I128V, T155K, Q178H, K179Q, H183R, H187R; vpr: E6S, V37A, Q86H; vpu: R31K, K34R, W41R, R45I, R47K, E48K, A50E, D52N, E63T, V65M, E66D, D78N, M82I"}}}, {"name": "D_NODE_0000020", "node_attrs": {"div": 0.07463, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G10T", "A554G", "G612A", "A618G", "A619C", "A661C", "A815G", "G1002A", "G1139A", "C1460T", "C1556T", "G1588A", "A1781G", "T1790C", "G1906A", "T1954C", "A1988G", "C2080T", "G2518A", "G2548A", "C2605T", "C2694T", "T2719C", "G2727A", "A2755G", "C2939T", "T2940G", "C3129A", "T3132A", "C3232T", "A3398G", "G3695T", "G3770A", "T4006C", "A4081G", "A4652G", "C4667T", "A4722T", "T4727A", "C4728A", "G4975C", "G4986A", "G5024A", "G5066A", "T5102C", "A5122G", "T5228C", "T5314C", "A5448G", "T5466C", "A5659C", "G5784A", "-6187T", "G6218-", "G6220-", "A6508G", "C8213T", "T8279G", "A8447G", "G8717A", "A8934C", "C8971T"], "RT-p51": ["T200I", "R211K", "L282C", "P345Q", "F346Y", "I435V"], "RT-p66": ["T200I", "R211K", "L282C", "P345Q", "F346Y", "I435V", "A534S", "V559I"], "gp120": ["M126I", "N368-"], "gp41": ["L304F", "F326V"], "nef": ["E64D", "V182M"], "p17": ["I61M", "E93K", "K95A", "N109T"], "p2": ["S10A"], "p24": ["V91I"], "p7": ["R41K"], "pro": ["M36I", "I64V"], "vif": ["S46C", "H48N", "M109I", "S130T", "D134N", "K179R"], "vpu": ["I18L"]}, "labels": {"aa": "RT-p51: T200I, R211K, L282C, P345Q, F346Y, I435V; RT-p66: T200I, R211K, L282C, P345Q, F346Y, I435V, A534S, V559I; gp120: M126I, N368-; gp41: L304F, F326V; nef: E64D, V182M; p17: I61M, E93K, K95A, N109T; p2: S10A; p24: V91I; p7: R41K; pro: M36I, I64V; vif: S46C, H48N, M109I, S130T, D134N, K179R; vpu: I18L"}}, "children": [{"name": "MW006068", "node_attrs": {"div": 0.12002, "accession": "MW006068", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 2010.0}, "Strain_name": {"value": "194289"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A369G", "G378A", "G407A", "A431G", "G520A", "T539G", "C540A", "A557G", "A571T", "A576G", "A604C", "G644A", "A660G", "C662T", "G677A", "G709C", "C710T", "G716A", "A743G", "C746T", "C747G", "T748C", "G762A", "G771C", "T794C", "G818T", "A833T", "T852A", "T884C", "C897T", "C978T", "T1004C", "C1060A", "A1076G", "G1078C", "A1089G", "C1103T", "A1157G", "A1190C", "C1220T", "A1250G", "T1331C", "A1339G", "A1359T", "A1445C", "C1453G", "A1461G", "T1462C", "T1481C", "C1490T", "A1499G", "C1535T", "A1567G", "C1571T", "A1643G", "C1650T", "G1667A", 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"T8932A", "G8933A", "A8935T", "A8944G", "A8950T", "G8970A", "T8971G", "T9180C", "C9181T"], "INT": ["N17S", "M50I", "K173R", "I182V", "T218I"], "RT-p51": ["E122K", "E207K", "K281R", "A286T", "D320N", "D324E", "I380V", "T386I", "E399D", "E415D"], "RT-p66": ["E122K", "E207K", "K281R", "A286T", "D320N", "D324E", "I380V", "T386I", "E399D", "E415D", "V458I", "L469I", "T470A", "S519N"], "gp120": ["V2A", "K5N", "T21N", "S32G", "T35K", "Q54R", "I56M", "N71H", "S87G", "N102K", "D105T", "-106Q", "-107G", "-109A", "N111Q", "-112E", "-113S", "-114I", "-115T", "-116Q", "-117G", "-120I", "-121M", "-122K", "-123E", "-124G", "Q143N", "I156V", "N158D", "N159D", "T161D", "S162T", "A172T", "N201K", "K204M", "T216S", "E240G", "E241D", "L249F", "N261K", "S263A", "T265E", "N267K", "T269L", "T279V", "I281V", "K293R", "G307E", "A308G", "E309A", "K319R", "N327-", "T329K", "K361Q", "S365G", "-368F", "-372K", "-374N", "-375E", "N378-", "N379-", "T380-", "-385T", "L414I", "S418T", "T427V", "N433-", "S436E", "N437S"], "gp41": ["L24V", "Q52H", "K77Q", "I84S", "S101F", "L108Q", "D109S", "N113E", "D125E", "N126K", "G129D", "L130T", "E137I", "T140I", "E143D", "T165S", "G215E", "G221E", "E223G", "Q229R", "G230D", "N239R", "R259H", "T268A", "E280G", "A281I", "I301V", "N305D", "V326I"], "nef": ["V11F", "T51N", "K105R", "V114I", "H116N", "Y120F", "D149E", "K151E", "E152K", "C169A", "I197Q", "K198L", "E201G", "Y203F"], "p1": ["P7S"], "p17": ["K12E", "A15T", "G62E", "I68M", "Q69K", "Y79F", "T81A", "E90A", "T109A", "S125T"], "p2": ["A10G", "I13A"], "p24": ["L6A", "V11I", "A14P", "E29D", "S41T", "T110N", "I115M", "G116A", "S120G", "K203R", "T210S"], "p6": ["A12E", "P24-", "S25P", "K31-", "D32-", "L35R", "Y36C", "N47S", "S51L"], "p7": ["K34R"], "pro": ["L63Q"], "rev": ["D11Q", "K14R", "V16I", "R17Q", "Y63H", "N86S", "S99N", "S103P", "A108T", "T114A"], "tat": ["R19K", "Q35P", "V36H", "R57A", "G61S", "G62N", "Q63P", "D80N", "E86K"], "vif": ["Y30H", "K33R", "Q36R", "G37R", "V65I", "I109S", "I154V", "R167K"], "vpr": ["T19A", "V31L", "E48N", "Q77R", "T89I"], "vpu": ["P3L", "V21I", "R31K", "R35K", "R37K", "D40E", "A50E", "E58D", "E60D", "L61R", "S62E", "V65S", "E66R", "M67L", "-70E", "-71M", "-72G", "H74L", "M82I"]}, "labels": {"aa": "INT: N17S, M50I, K173R, I182V, T218I; RT-p51: E122K, E207K, K281R, A286T, D320N, D324E, I380V, T386I, E399D, E415D; RT-p66: E122K, E207K, K281R, A286T, D320N, D324E, I380V, T386I, E399D, E415D, V458I, L469I, T470A, S519N; gp120: V2A, K5N, T21N, S32G, T35K, Q54R, I56M, N71H, S87G, N102K, D105T, -106Q, -107G, -109A, N111Q, -112E, -113S, -114I, -115T, -116Q, -117G, -120I, -121M, -122K, -123E, -124G, Q143N, I156V, N158D, N159D, T161D, S162T, A172T, N201K, K204M, T216S, E240G, E241D, L249F, N261K, S263A, T265E, N267K, T269L, T279V, I281V, K293R, G307E, A308G, E309A, K319R, N327-, T329K, K361Q, S365G, -368F, -372K, -374N, -375E, N378-, N379-, T380-, -385T, L414I, S418T, T427V, N433-, S436E, N437S; gp41: L24V, Q52H, K77Q, I84S, S101F, L108Q, D109S, N113E, D125E, N126K, G129D, L130T, E137I, T140I, E143D, T165S, G215E, G221E, E223G, Q229R, G230D, N239R, R259H, T268A, E280G, A281I, I301V, N305D, V326I; nef: V11F, T51N, K105R, V114I, H116N, Y120F, D149E, K151E, E152K, C169A, I197Q, K198L, E201G, Y203F; p1: P7S; p17: K12E, A15T, G62E, I68M, Q69K, Y79F, T81A, E90A, T109A, S125T; p2: A10G, I13A; p24: L6A, V11I, A14P, E29D, S41T, T110N, I115M, G116A, S120G, K203R, T210S; p6: A12E, P24-, S25P, K31-, D32-, L35R, Y36C, N47S, S51L; p7: K34R; pro: L63Q; rev: D11Q, K14R, V16I, R17Q, Y63H, N86S, S99N, S103P, A108T, T114A; tat: R19K, Q35P, V36H, R57A, G61S, G62N, Q63P, D80N, E86K; vif: Y30H, K33R, Q36R, G37R, V65I, I109S, I154V, R167K; vpr: T19A, V31L, E48N, Q77R, T89I; vpu: P3L, V21I, R31K, R35K, R37K, D40E, A50E, E58D, E60D, L61R, S62E, V65S, E66R, M67L, -70E, -71M, -72G, H74L, M82I"}}}, {"name": "D_NODE_0000021", "node_attrs": {"div": 0.08206000000000001, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["-256A", "C287A", "T288C", "C379A", "G413C", "A1835G", "C1986T", "G2456T", "T2935C", "G3529A", "T3589C", "G3766A", "T3778C", "A3923T", "T4144C", "C4543A", "G4913A", "A5093G", "C5221T", "G5267A", "G5296T", "T5382G", "A5652G", "G5700A", "A5867C", "C5920T", "A5957G", "G6023A", "G6028A", "T6169A", "-6170T", "T6171G", "-6172G", "-6189C", "A6192-", "A6215-", "A6228G", "T6263G", "G6303A", "T6340C", "C6358T", "T6382G", "T6436A", "G6451A", "A6475G", "A6478G", "C6481T", "A6520G", "G6532A", "C6548T", "C6607T", "C6618T", "A6648C", "T6658C", "T6690-", "T6827C", "A6865G", "A6936G", "C7008-", "A7009-", "G7123A", "A7129G", "A7255T", "A7256C", "A7315G", "T7373C", "T7609C", "T7630G", "A7668G", "A7742C", "G7754C", "C7906T", "C8147A", "G8264A", "A8603G", "T8666G", "A8847T", "C8903T", "C9018A", "T9019G", "G9033-", "G9095T"], "INT": ["M50L", "D256E"], "gp120": ["K5Q", "E57K", "E125-", "L137V", "R150K", "S181T", "D251N", "T255I", "N272Y", "F325L", "N328K", "K361G", "T366-", "I468L"], "gp41": ["K122R", "K147Q", "E151Q", "L282I", "V321I"], "nef": ["D108E"], "p17": ["A15E", "K26N"], "p6": ["T39A"], "pro": ["I13V"], "rev": ["P100H"], "tat": ["D2E"], "vpr": ["A55T", "I84T", "S93A"], "vpu": ["E63A"]}, "labels": {"aa": "INT: M50L, D256E; gp120: K5Q, E57K, E125-, L137V, R150K, S181T, D251N, T255I, N272Y, F325L, N328K, K361G, T366-, I468L; gp41: K122R, K147Q, E151Q, L282I, V321I; nef: D108E; p17: A15E, K26N; p6: T39A; pro: I13V; rev: P100H; tat: D2E; vpr: A55T, I84T, S93A; vpu: E63A"}}, "children": [{"name": "D_NODE_0000022", "node_attrs": {"div": 0.08736000000000001, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G520A", "C540A", "T782C", "C950T", "A1070G", "G1313A", "G1388A", "A1445C", "G1495A", "A1567G", "C1571T", "C1996T", "G2629A", "A2950T", "A3088G", "G3166A", "A3214G", "T3567C", "A3787G", "G4112A", "G4549A", "T4674C", "C4730T", "T5356C", "C5371T", "T5478C", "A5556G", "G5557A", "G5561A", "C5659T", "G5696A", "A5720G", "C5797T", "G5805A", "G5839A", "T5884G", "A6176G", 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2011.0}, "Strain_name": {"value": "194604"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C150T", "T200C", "G206A", "C281T", "A356T", "C362T", "G394A", "G407A", "C525T", "T536C", "A537C", "A562G", "A571T", "A604C", "G614A", "G618A", "A690G", "C698T", "A702G", "G709A", "G716A", "T718G", "A764T", "G771C", "A785G", "C827T", "T852A", "G944T", "A1073G", "G1090A", "A1134G", "T1143C", "C1178T", "C1230A", "G1232A", "T1238C", "A1240G", "A1250G", "C1253T", "G1268A", "C1295T", "A1404G", "T1406C", "A1412G", "A1449C", "T1451A", "A1498G", "T1501C", "C1514T", "T1537C", "T1616A", "A1657T", "A1664G", "C1676T", "T1796C", "A1857G", "A1927G", "C1987T", "A2012G", "A2119G", "A2254G", "C2263T", "C2281T", "T2335C", "C2353T", "T2386G", "T2479C", "T2499C", "A2560C", "A2611G", "T2631C", "C2671T", "A2722C", "A2734G", "A2842G", "A2929G", "A3019G", "A3028G", "A3043G", "G3053A", "A3062G", "A3070G", "A3164T", "G3211A", "A3226T", "A3277G", "A3283G", "C3346A", "C3376T", "T3445A", "T3449A", 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"-6997T", "-6998A", "-6999C", "-7002G", "-7004G", "-7005G", "-7006A", "-7008A", "-7009C", "C7016A", "A7101G", "C7102T", "T7105C", "A7108C", "T7117C", "A7138G", "A7154G", "G7158C", "A7161-", "A7164C", "T7172C", "A7183G", "G7239A", "A7269G", "A7322T", "G7375A", "C7397G", "G7459A", "G7508A", "A7525G", "A7532C", "A7549G", "A7590C", "C7603T", "T7604A", "C7605A", "C7625G", "G7630A", "G7640A", "C7651T", "T7656G", "G7658C", "G7668A", "G7689A", "A7701G", "A7706C", "C7742A", "A7744G", "A7750G", "C7754G", "A7782G", "T7789C", "A7796T", "C7801T", "A7858G", "G7862A", "C7939T", "C8005A", "T8047C", "A8086G", "A8093C", "A8104G", "G8114C", "A8147C", "T8155C", "C8156T", "C8167T", "T8214A", "T8218C", "G8255A", "A8264G", "C8296T", "G8304C", "A8308C", "A8314G", "A8335G", "G8436C", "G8447A", "C8450T", "T8492C", "A8567G", "T8568C", "G8595T", "A8597C", "T8600C", "C8651T", "C8652A", "A8653G", "A8663G", "C8687T", "C8690T", "T8701A", "A8739G", "A8788G", "T8789G", "A8793G", "A8801T", "G8814A", "G8822A", "T8835C", "G8864T", "T8887A", "T8914A", "A8922T", "A8923T", "G8924A", "C8928A", "A8931G", "C8934A", "G8936A", "T8947A", "T8974-", "T9072C", "T9084G", "T9095G", "T9108C", "T9180C", "C9181T"], "INT": ["K7R", "V126L", "K173R", "T206S", "T210I", "Y227F", "I234V", "A265V"], "RT-p51": ["D121Y", "I135T", "V179A", "D320N", "K323E", "M357L", "Q377H"], "RT-p66": ["D121Y", "I135T", "V179A", "D320N", "K323E", "M357L", "Q377H", "L452I", "R461K", "V467I", "I482V", "S491A", "A502V"], "gp120": ["E4K", "Q5E", "L6A", "S32A", "T35A", "Q54R", "I56V", "K57R", "N60K", "N64Y", "H77Q", "T104-", "D105-", "N108-", "T110-", "N111-", "K127E", "V137I", "H145Y", "V153I", "Q155S", "T161A", "K204E", "N206S", "T208K", "P210Q", "K212Q", "T216S", "E241N", "I243T", "T250E", "I255N", "N261K", "E262D", "S263P", "N267H", "Q287A", "T292I", "I294E", "G307V", "L314I", "Q315R", "Q316E", "D323E", "I332A", "K334N", "P335Q", "S337A", "T344A", "T345M", "S347T", "G361S", "S365D", "-366S", "W367F", "-368D", "-372W", "S373D", "-374N", "-375T", "-376N", "-377S", "N378A", "T380S", "-381S", "-382T", "-383R", "-384G", "-385N", "L388I", "N416S", "A432N", "N433-", "N437T", "F440L", "R462K", "K472R"], "gp41": ["M7L", "Q32E", "V69I", "K77Q", "N96T", "S101N", "L108V", "M118R", "E119Q", "R122K", "G129D", "N133S", "I135L", "Q147K", "Q151E", "N160S", "T165S", "V187I", "I264L", "V271L", "I282L", "F304Y", "V318I", "I321V", "R334T"], "nef": ["A32P", "V85F", "Q104R", "I133V", "D149G", "K151E", "E158K", "E174D", "M182K", "F191Y", "K194L", "I197V", "F202Y"], "p1": ["H9L"], "p17": ["R20Q", "G62E", "I68L", "Q69K", "K76R", "Y79F", "E90A", "A95T", "T119A", "R123G", "S125N", "V128G"], "p2": ["N9Q"], "p24": ["A14P", "S41T", "E71D", "S120N", "I135V", "K170R", "S225G"], "p7": ["K11R", "I12T", "I24T"], "pro": ["K20R", "I72V"], "rev": ["L18I", "P31S", "H53N", "S67L", "R80G", "N82T", "N86D", "C89S", "H100P", "S103L", "P107S"], "tat": ["R19S", "N23T", "A64D", "P77L"], "vif": ["K33R", "K34R", "L39M", "R92G", "Y111H", "E117D", "I124L", "I128L", "T155K", "R167S", "G185E"], "vpr": ["T19A", "S41G", "Y45H", "Q77H", "I83V", "T89I"], "vpu": ["Q2K", "F27I", "R31I", "R47K", "L64F", "V65M", "-69Y", "H73-"]}, "labels": {"aa": "INT: K7R, V126L, K173R, T206S, T210I, Y227F, I234V, A265V; RT-p51: D121Y, I135T, V179A, D320N, K323E, M357L, Q377H; RT-p66: D121Y, I135T, V179A, D320N, K323E, M357L, Q377H, L452I, R461K, V467I, I482V, S491A, A502V; gp120: E4K, Q5E, L6A, S32A, T35A, Q54R, I56V, K57R, N60K, N64Y, H77Q, T104-, D105-, N108-, T110-, N111-, K127E, V137I, H145Y, V153I, Q155S, T161A, K204E, N206S, T208K, P210Q, K212Q, T216S, E241N, I243T, T250E, I255N, N261K, E262D, S263P, N267H, Q287A, T292I, I294E, G307V, L314I, Q315R, Q316E, D323E, I332A, K334N, P335Q, S337A, T344A, T345M, S347T, G361S, S365D, -366S, W367F, -368D, -372W, S373D, -374N, -375T, -376N, -377S, N378A, T380S, -381S, -382T, -383R, -384G, -385N, L388I, N416S, A432N, N433-, N437T, F440L, R462K, K472R; gp41: M7L, Q32E, V69I, K77Q, N96T, S101N, L108V, M118R, E119Q, R122K, G129D, N133S, I135L, Q147K, Q151E, N160S, T165S, V187I, I264L, V271L, I282L, F304Y, V318I, I321V, R334T; nef: A32P, V85F, Q104R, I133V, D149G, K151E, E158K, E174D, M182K, F191Y, K194L, I197V, F202Y; p1: H9L; p17: R20Q, G62E, I68L, Q69K, K76R, Y79F, E90A, A95T, T119A, R123G, S125N, V128G; p2: N9Q; p24: A14P, S41T, E71D, S120N, I135V, K170R, S225G; p7: K11R, I12T, I24T; pro: K20R, I72V; rev: L18I, P31S, H53N, S67L, R80G, N82T, N86D, C89S, H100P, S103L, P107S; tat: R19S, N23T, A64D, P77L; vif: K33R, K34R, L39M, R92G, Y111H, E117D, I124L, I128L, T155K, R167S, G185E; vpr: T19A, S41G, Y45H, Q77H, I83V, T89I; vpu: Q2K, F27I, R31I, R47K, L64F, V65M, -69Y, H73-"}}}, {"name": "MW006081", "node_attrs": {"div": 0.12629, "accession": "MW006081", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "275031"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A46G", "G52A", "A59G", "G112A", "C151T", "T165A", "G167A", "T305A", "A380T", "C399A", "C413G", "A416G", "A461G", "T476C", "G480A", "A499G", "A512G", "A515C", "G519A", "C522A", "G542C", "C583G", "A599G", "A606G", "G644A", "A656G", "A666G", "G667A", "C710T", "A743G", "C746T", "G770A", "A774C", "G791A", "G821A", "T824C", "G956A", "T1004C", "C1060G", "G1078C", "C1091T", "C1118T", "A1160G", "C1175T", "T1181A", "G1205A", "T1214C", "A1277G", "A1418G", "C1453T", "G1476A", "G1477A", "T1481C", "A1543G", "C1613T", "G1640A", "A1771G", "G1784A", "A1793G", "T1828C", "T1873C", "T1895C", "C1954A", "A1993C", "G2173A", "C2195T", "C2211T", "A2212G", "A2215C", "A2230G", "T2236C", "G2341A", "G2392A", "T2456G", "G2459A", "C2464A", "T2521C", "C2584T", "A2602T", "A2613G", "A2818G", "G2869A", "C2942A", "C2952G", "G2969A", "G3004A", "G3098A", "G3154A", "C3178T", "C3223T", "G3250A", "C3294T", "G3385A", "A3397C", "T3445C", "A3535G", "A3542C", "G3562A", "A3622G", "T3634C", "A3637C", "A3694C", "T3757G", "C3763T", "A3770G", "A3775C", "T3793C", "G3859A", "T3904C", "G3925A", "A3973C", "T3976C", "C4076A", "C4078T", "C4141T", "A4246G", "T4276C", "C4321T", "G4642A", "A4643C", "C4665T", "C4726T", "A4766G", "A4769C", "A4781G", "C4841A", "A4949G", "C4975T", "A4993C", "G4995A", "A5049T", "G5082A", "C5091T", "C5125T", "A5155G", "G5167A", "G5176A", "G5187A", "C5242A", "A5272G", "G5330A", "A5367C", "A5370G", "G5386A", "C5412T", "C5466T", "G5482A", "T5483C", "T5492C", "A5499G", "A5545C", "A5548G", "C5559T", "C5584T", "C5614T", "T5621A", "G5694A", "G5699A", "T5704G", "A5718G", "A5784G", "G5794A", "T5826C", "T5857C", "G5858T", "T5859C", "C5862A", "T5870A", "T5871A", "A5921G", "C5922T", "A5938G", "C5958A", "T6064C", "G6076A", "G6079A", "G6088T", "T6100C", "A6158C", "A6169T", "-6175A", "T6178C", "-6180T", "-6181A", "-6186A", "T6187C", "-6190A", "-6192G", "-6194G", "-6195A", "-6196C", "-6198C", "-6199A", "-6200A", "-6201A", "-6202T", "-6203A", "-6204A", "-6205C", "-6206A", "-6207C", "-6208A", "-6209A", "-6210T", "-6211T", "-6212G", "-6213A", "-6214A", "-6215G", "-6216C", "-6217A", "-6218A", "-6220G", "-6221A", "-6222A", "-6223C", "-6224A", "-6225T", "A6226G", "G6232T", "A6234C", "C6241T", "A6253G", "A6273G", "G6274A", "G6277A", "A6329G", "A6376G", "G6382A", "C6412T", "G6466A", "C6487T", "C6599A", "G6631A", "G6638C", "A6647C", "A6654C", "T6655G", "C6658T", "A6659G", "C6660A", "A6669C", "C6683A", "A6731G", "A6733G", "G6743C", "T6745G", "C6758T", "T6766A", "G6771A", "G6776A", "A6781T", "A6790C", "A6791G", "C6797A", "G6802A", "C6807A", "A6810C", "G6818A", "G6821A", "A6822G", "T6826G", "A6842C", "C6843A", "A6844C", "T6849A", "T6853C", "G6865A", "G6936A", "A6937T", "G6948C", "T6949C", "C6951A", "G6954C", "G6955A", "-6956T", "A6959-", "A6960-", "T6961-", "A6962-", "T6964-", "A6965-", "C6966-", "A6967-", "-6975C", "-6976A", "-6977G", "-6978A", "-6980C", "-6981T", "-6982G", "-6983T", "-6984T", "-6993C", "-6994A", "-6995G", "-6996A", "-6997G", "-6998G", "-6999A", "-7002A", "-7004A", "-7005A", "-7006C", "A7007-", "A7015T", "C7019A", "A7057G", "C7084T", "A7089C", "A7093G", "C7094A", "T7095A", "C7102A", "T7106A", "A7123C", "A7148G", "A7149T", "T7150A", "A7157G", "G7158A", "-7160A", "A7161C", "-7162A", "T7172A", "C7201T", "C7222T", "A7234G", "A7246G", "G7270A", "A7277C", "A7297G", "A7322G", "C7373T", "T7565G", "A7590G", "G7594A", "C7609T", "A7632C", "G7640C", "G7688A", "A7711G", "A7732G", "G7735A", "C7762T", "T7813C", "A7818G", "G7831A", "T7844C", "G7915A", "G7918T", "T7921A", "C7938T", "A7978C", "A7989C", "G8158C", "G8170T", "A8193G", "A8228G", "G8245A", "G8255C", "T8268G", "C8270T", "A8272T", "G8279A", "A8288G", "A8294C", "T8375G", "A8388G", "A8396G", "G8479A", "C8499G", "T8501A", "A8503C", "C8504T", "G8540A", "T8543G", "T8546C", "A8564G", "A8567C", "A8597G", "A8643G", "G8666C", "T8675C", "C8688A", "T8740C", "A8750C", "T8789A", "A8801G", "T8829A", "G8846A", "T8855C", "G8875A", "A8886G", "G8893A", "T8903C", "C8921T", "A8930G", "T8932C", "A8950T", "C8967A", "G8970A", "T8971G", "T8974G", "A8977G", "C8978A", "A8979C", "C8990T", "C9012T", "A9015G", "A9016G", "C9017T", "A9018T", "G9019T", "A9027G", "C9028T", "-9033G", "T9040C", "T9051A", "T9075C", "A9131G", "G9137A", "A9144G"], "INT": ["L101I"], "RT-p51": ["T39M", "E40D", "E122K", "D123E", "E169D", "K173R", "L283I", "A286G", "V292I", "D335N", "M357I", "T400I"], "RT-p66": ["T39M", "E40D", "E122K", "D123E", "E169D", "K173R", "L283I", "A286G", "V292I", "D335N", "M357I", "T400I", "N483H", "E514D", "S519N", "N554K", "I559V"], "gp120": ["V2L", "A3V", "L6K", "T23V", "T35E", "E78D", "N102H", "-106W", "-107K", "N108D", "-109I", "T110N", "-112T", "-113S", "-114D", "-115T", "-116N", "-117N", "-118T", "-119I", "-120E", "-121A", "-122K", "-123N", "-124M", "-125G", "K127T", "I133M", "K140R", "N159D", "L249I", "E262Q", "T265P", "N267T", "T269E", "Y272S", "Q277K", "K293E", "D297Q", "H302Y", "N304K", "S306N", "A308T", "E309D", "K312N", "T313A", "Q315K", "A318D", "K319T", "G322R", "D323S", "N327-", "K328N", "T329K", "I331H", "G361D", "S365-", "W367-", "N369-", "S370-", "-372N", "-374S", "-375E", "-376L", "-377F", "-381E", "-382E", "-383K", "-384N", "Q389K", "E412A", "L414K", "N416K", "S418T", "A432V", "F440I"], "gp41": ["M7V", "S88A", "N96S", "E110A", "N113H", "G129S", "K172R", "M176I", "F206L", "A212V", "E225D", "Q229P", "K297R", "I309V", "V318L", "V322G", "Q323Y", "V326I", "I329V", "N331H"], "nef": ["I16V", "S46N", "P53A", "D54A", "I101V", "E108D", "H116N", "Y120F", "I133T", "D149E", "C163S", "M168I", "R178K", "M182V", "R184K", "I197T", "K198Q", "Y203F"], "p17": ["E15D", "N26K", "G49S", "E55G", "G62K", "Q63K", "Q69N", "A83G", "R91G", "S111D"], "p2": ["A10V"], "p24": ["I15L", "T110S", "G116A"], "p6": ["K31R", "L50S"], "p7": ["G4N", "K26R"], "pro": ["E65D"], "rev": ["E10D", "A15V", "S67F", "V104L", "A108S"], "tat": ["V4I", "V36T", "I39T", "T58A", "P70S", "P77S"], "vif": ["R19N", "H27Y", "P47L", "E61D", "T130I", "Q136P", "A137T", "T155S", "V166I", "T180I", "N190S"], "vpr": ["S28N", "V37I", "T89V", "S94N"], "vpu": ["P3S", "V5E", "R31K", "L33V", "E60D", "L61K", "S62E", "A63E", "V65S", "E66T", "M67F", "G68-", "-69V", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: L101I; RT-p51: T39M, E40D, E122K, D123E, E169D, K173R, L283I, A286G, V292I, D335N, M357I, T400I; RT-p66: T39M, E40D, E122K, D123E, E169D, K173R, L283I, A286G, V292I, D335N, M357I, T400I, N483H, E514D, S519N, N554K, I559V; gp120: V2L, A3V, L6K, T23V, T35E, E78D, N102H, -106W, -107K, N108D, -109I, T110N, -112T, -113S, -114D, -115T, -116N, -117N, -118T, -119I, -120E, -121A, -122K, -123N, -124M, -125G, K127T, I133M, K140R, N159D, L249I, E262Q, T265P, N267T, T269E, Y272S, Q277K, K293E, D297Q, H302Y, N304K, S306N, A308T, E309D, K312N, T313A, Q315K, A318D, K319T, G322R, D323S, N327-, K328N, T329K, I331H, G361D, S365-, W367-, N369-, S370-, -372N, -374S, -375E, -376L, -377F, -381E, -382E, -383K, -384N, Q389K, E412A, L414K, N416K, S418T, A432V, F440I; gp41: M7V, S88A, N96S, E110A, N113H, G129S, K172R, M176I, F206L, A212V, E225D, Q229P, K297R, I309V, V318L, V322G, Q323Y, V326I, I329V, N331H; nef: I16V, S46N, P53A, D54A, I101V, E108D, H116N, Y120F, I133T, D149E, C163S, M168I, R178K, M182V, R184K, I197T, K198Q, Y203F; p17: E15D, N26K, G49S, E55G, G62K, Q63K, Q69N, A83G, R91G, S111D; p2: A10V; p24: I15L, T110S, G116A; p6: K31R, L50S; p7: G4N, K26R; pro: E65D; rev: E10D, A15V, S67F, V104L, A108S; tat: V4I, V36T, I39T, T58A, P70S, P77S; vif: R19N, H27Y, P47L, E61D, T130I, Q136P, A137T, T155S, V166I, T180I, N190S; vpr: S28N, V37I, T89V, S94N; vpu: P3S, V5E, R31K, L33V, E60D, L61K, S62E, A63E, V65S, E66T, M67F, G68-, -69V, -70E, -71M, -72G"}}}]}, {"name": "D_NODE_0000023", "node_attrs": {"div": 0.08358, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T794C", "G1354C", "A2881G", "G5861A", "A5865G", "A6326G", "T6766C", "G6773A", "-7160C", "-7162G", "G8219A", "C8809A"], "RT-p66": ["A360T"], "gp120": ["A3T", "E4G", "D105E", "I126-", "G307R"], "gp41": ["N166K", "A306T"], "nef": ["H50Q", "A156D"], "p24": ["G208A"]}, "labels": {"aa": "RT-p66: A360T; gp120: A3T, E4G, D105E, I126-, G307R; gp41: N166K, A306T; nef: H50Q, A156D; p24: G208A"}}, "children": [{"name": "D_NODE_0000024", "node_attrs": {"div": 0.08642, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G677A", "A1498G", "A1588G", "C2044T", "A2170G", "A3651G", "T4914C", "A5112G", "G5187A", "T5214C", "C5659A", "A5708G", "A5787T", "T5788A", "T5789G", "T5791G", "C5792A", "A5793G", "A5954G", "G5957A", "-6179G", "-6181C", "-6225T", "A6333G", "A6525G", "-6689A", "A6780G", "-6956A", "-6971A", "-6972G", "-6974A", "-6975A", "-6977G", "-6978A", "-6993C", "-6994A", "-6998G", "-7002A", "-7004G", "-7005A", "G7235A", "G7276A", "G7315A", "G7459A", "A7572G", "A7641G", "T7642A", "G8540A", "G8807A", "C8868T", "A8909G"], "gp120": ["K34E", "K224R", "N437Q", "V461I"], "gp41": ["K90R", "N113G"], "nef": ["Y120F", "P176S"], "p7": ["K11R", "K41R"], "vif": ["Y110H", "K176E"], "vpr": ["Q3R", "S28N", "T84I"], "vpu": ["L18I", "K34R", "E60D", "L61R", "S62E"]}, "labels": {"aa": "gp120: K34E, K224R, N437Q, V461I; gp41: K90R, N113G; nef: Y120F, P176S; p7: K11R, K41R; vif: Y110H, K176E; vpr: Q3R, S28N, T84I; vpu: L18I, K34R, E60D, L61R, S62E"}}, "children": [{"name": "AF484494", "node_attrs": {"div": 0.11356, "accession": "AF484494", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UGG10555"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C399A", "C413G", "A417C", "G455A", "C471A", "G518A", "T748A", "A776G", "G829A", "T852G", "C853T", "C892G", "C893T", "A903G", "C904T", "T962C", "G1019A", "G1078C", "A1134G", "T1143C", "A1160G", "T1172C", "A1199G", "C1220T", "C1245T", "C1253T", "T1289C", "G1302A", "T1325C", "A1328G", "C1354G", "G1452A", "C1453A", "A1454T", "A1475G", "G1532A", "A1665C", "G1725A", "T1730C", "A1743G", "C1749T", "G1784A", "T1828A", "T1864C", "A2059G", "T2086A", "A2127C", "A2239C", "G2341A", "T2443C", "T2476C", "T2497C", "A2566G", "A2602G", "A2626G", "C2635T", "A2693C", "G2704A", "A2715G", "C2719T", "C2749T", "T2758C", "A2829C", "A2830G", "G2878A", "G2969A", "G2980A", "C3013T", "G3016A", "T3022C", "A3031G", "A3043G", "A3127G", "A3136G", "G3154A", "A3160G", "A3164T", "T3184C", "A3204C", "A3277G", "A3403G", "G3581A", "C3589T", "G3643A", "G3715A", "A3787T", "C4015T", "A4084G", "G4145T", "C4318T", "G4354A", "C4569T", "G4673C", "G4695A", "G4767A", "G4779A", "A4857G", "A4949G", "A4968G", "A5213G", "T5224C", "A5225G", "T5237C", "C5384T", "G5448A", "A5491T", "A5493G", "G5561A", "A5576T", "C5614T", "T5617C", "G5622A", "G5650T", "C5678G", "T5679C", "G5696A", "G5712A", "A5718G", "A5722G", "G5725A", "G5902A", "C5917T", "G5962A", "C6004T", "A6015G", "C6046T", "G6088A", "T6100C", "T6134C", "A6158G", "C6160A", "C6163T", "C6165G", "T6166A", "A6169G", "G6171T", "A6173G", "-6175A", "-6180C", "-6186C", "T6187C", "A6188-", "C6189-", "A6191-", "T6193-", "A6197-", "A6219-", "-6224C", "A6234C", "C6241T", "A6253G", "C6256T", "A6282G", "C6287G", "A6327G", "C6336G", "C6337T", "C6340A", "G6391A", "C6396A", "T6438A", "A6471C", "T6493C", "A6544G", "T6592C", "G6644A", "T6668A", "T6688C", "-6690T", "T6719C", "A6734G", "G6743A", "A6748C", "A6754G", "G6774A", "C6777T", "G6779A", "A6790C", "G6803A", "A6811C", "A6820G", "C6824A", "T6826G", "A6836C", "A6841C", "G6948A", "C6951G", "A6952T", "-6957A", "-6958T", "A6960C", "-6963G", "A6965G", "C6966T", "-6968T", "-6969G", "-6970G", "-6973A", "-6976T", "A6986-", "A6987-", "A6990G", "-6995T", "-6996T", "-6997A", "-6999A", "-7000T", "-7006G", "-7008C", "-7009T", "G7054A", "T7095G", "A7101G", "C7102T", "C7201T", "T7228C", "A7420G", "T7554G", "A7632T", "A7646T", "C7651T", "C7699T", "A7701G", "T7775C", "C7801A", "A7858G", "G7915A", "G7998A", "A8006G", "G8014A", "C8026T", "A8119G", "G8144A", "G8194A", "A8196T", "G8201A", "T8213G", "G8254A", "G8267A", "A8288G", "C8302T", "C8351T", "A8388G", "G8398A", "T8440C", "T8444G", "G8476T", "T8492A", "T8501C", "G8502A", "A8503C", "A8567G", "G8603A", "G8666C", "T8759C", "A8823G", "T8845A", "T8860C", "G8870T", "T8887A", "A8906G", "A8918G", "A8931G", "A8935T", "C9012A", "T9029-", "-9033G", "T9108C", "A9117G"], "INT": ["A124S", "A265V"], "RT-p51": ["K11T", "D121Y", "I200L", "E207G", "K245T", "V292I", "M357L", "E370A"], "RT-p66": ["K11T", "D121Y", "I200L", "E207G", "K245T", "V292I", "M357L", "T360A", "E370A", "V496I"], "gp120": ["Q54R", "N102E", "T104R", "-106L", "-107E", "-109A", "N111T", "-112L", "-113G", "-114M", "-115T", "K127-", "I133M", "Q143R", "H145D", "N159S", "N160S", "T161N", "S162E", "T181N", "F195Y", "N206T", "V264I", "Y272N", "T279I", "I294V", "D297N", "R307K", "A308V", "E309R", "K312N", "V317I", "K319N", "L324M", "K328Q", "S365-", "W367-", "T371V", "-372W", "S373N", "-374T", "-375S", "-376V", "-377W", "N378R", "T380D", "-381S", "-382T", "-383L", "-384D", "-385T", "L414R", "N416S"], "gp41": ["I84S", "D109E", "E110V", "M115L", "N133S", "G232D", "I235V", "A281T", "N298I", "A300T", "F304V", "V322I", "I329V"], "nef": ["I16V", "R19K", "V33A", "S45I", "D54T", "E108D", "N161D", "M168K", "M173T", "M182K", "I197V", "K198L"], "p17": ["N26K", "K28Q", "L46I", "M61I"], "p2": ["A10N"], "p24": ["L6Q", "I15M", "S33N", "S41V", "T54S", "T58V", "M96I", "G116A", "I135V", "V191I", "A208G"], "p6": ["G16R", "T22A", "-23S", "P24S", "S25-", "L50*"], "rev": ["D11E", "V16I", "I21F", "H53R", "G56S", "L60F", "T91A", "S99N", "E116N"], "tat": ["P3L", "I39L", "G62D", "D67V"], "vif": ["M29I", "G37R", "E61K", "V65I", "K91E", "I128V"], "vpr": ["V37A", "S41G", "Y45H"], "vpu": ["P3S", "A15S", "T24S", "C30Y", "I39V", "D40N"]}, "labels": {"aa": "INT: A124S, A265V; RT-p51: K11T, D121Y, I200L, E207G, K245T, V292I, M357L, E370A; RT-p66: K11T, D121Y, I200L, E207G, K245T, V292I, M357L, T360A, E370A, V496I; gp120: Q54R, N102E, T104R, -106L, -107E, -109A, N111T, -112L, -113G, -114M, -115T, K127-, I133M, Q143R, H145D, N159S, N160S, T161N, S162E, T181N, F195Y, N206T, V264I, Y272N, T279I, I294V, D297N, R307K, A308V, E309R, K312N, V317I, K319N, L324M, K328Q, S365-, W367-, T371V, -372W, S373N, -374T, -375S, -376V, -377W, N378R, T380D, -381S, -382T, -383L, -384D, -385T, L414R, N416S; gp41: I84S, D109E, E110V, M115L, N133S, G232D, I235V, A281T, N298I, A300T, F304V, V322I, I329V; nef: I16V, R19K, V33A, S45I, D54T, E108D, N161D, M168K, M173T, M182K, I197V, K198L; p17: N26K, K28Q, L46I, M61I; p2: A10N; p24: L6Q, I15M, S33N, S41V, T54S, T58V, M96I, G116A, I135V, V191I, A208G; p6: G16R, T22A, -23S, P24S, S25-, L50*; rev: D11E, V16I, I21F, H53R, G56S, L60F, T91A, S99N, E116N; tat: P3L, I39L, G62D, D67V; vif: M29I, G37R, E61K, V65I, K91E, I128V; vpr: V37A, S41G, Y45H; vpu: P3S, A15S, T24S, C30Y, I39V, D40N"}}}, {"name": "AB485650", "node_attrs": {"div": 0.11702, "accession": "AB485650", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1991.0}, "Strain_name": {"value": "UG270"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G112A", "G121A", "A265G", "A301G", "T305A", "T306A", "A353G", "T372C", "A435C", "A494C", "C525T", "G534T", "C558G", "A571T", "C587T", "C626A", "T635C", "C641T", "A656G", "C661A", "G740A", "C827T", "G989A", "T992G", "A1025G", "T1055C", "A1074G", "A1079C", "C1211A", "T1244A", "A1250G", "G1268A", "A1367G", "T1427C", "A1445C", "A1446T", "G1472A", "G1477C", "T1481C", "C1490T", "G1495A", "T1501A", "A1536C", "T1616A", "T1646C", "A1664G", "T1792C", "T1797G", "C1831T", "G1835A", "A1907G", "C1954T", "T1978G", "C1987A", "A2032G", "A2113C", "G2117A", "G2134A", "A2189C", "C2195T", "A2210C", "C2211T", "A2329G", "T2383C", "T2456G", "G2462A", "T2479A", "C2485T", "T2499A", "C2596T", "A2641G", "T2723C", "G2804A", "G2833A", "T2873C", "G2881A", "A2929G", "C2942A", "G2951A", "G2972A", "G3173A", "A3218G", "G3221T", "A3249G", "C3252T", "T3262C", "A3302G", "G3398A", "T3449A", "A3456G", "C3475T", "A3529G", "G3643T", "G3664A", "G3685A", "C3773T", "G3781A", "A3880G", "A3985G", "G4019A", "A4150G", "C4321T", "A4399C", "G4616A", "T4670C", "A4688G", "C4721A", "C4730T", "A4735G", "G4770A", "C4771G", "G4774A", "G4835A", "C4841A", "A4857C", "G4862A", "A4911C", "A4937C", "T4959G", "T4976C", "T4991C", "G5009T", "T5028C", "T5209G", "A5213C", "C5228T", "A5282C", "T5319A", "A5345G", "A5370C", "C5371T", "G5382T", "C5397A", "T5424C", "G5432A", "A5545G", "A5548C", "G5557A", "G5599A", "C5602T", "C5688T", "T5728A", "G5747T", "A5784G", "C5795A", "C5797T", "T5799A", "G5800T", "T5826C", "G5842A", "G5882A", "T5884A", "A5983T", "A5995G", "A6024T", "A6028G", "G6076T", "T6101C", "A6133G", "C6145A", "A6174G", "-6175G", "-6180A", "T6184C", "-6186A", "A6188G", "-6190C", "-6192C", "-6194A", "-6195G", "-6196G", "-6198T", "-6199A", "-6200A", "-6201A", "-6202A", "-6203G", "-6204G", "-6205A", "-6206A", "-6207G", "-6208A", "-6209A", "-6210T", "-6211G", "-6212A", "-6213T", "-6214G", "-6215A", "-6216C", "-6217T", "-6218A", "-6220T", "-6221G", "-6222A", "-6223G", "-6224G", "G6263T", "A6273G", "G6277A", "T6301C", "G6313A", "A6349G", "G6379A", "G6392A", "A6442G", "G6458A", "A6459G", "C6487T", "T6523C", "C6563T", "A6671C", "C6673A", "C6678T", "C6683A", "A6686T", "G6687A", "-6690C", "-6697G", "A6703-", "G6712A", "A6714G", "T6720G", "C6721G", "G6750A", "A6753G", "C6758T", "C6766T", "A6767G", "G6771C", "A6778T", "G6894C", "T6898C", "C6925T", "G6935A", "C6938T", "A6950G", "C6951A", "-6957G", "-6958A", "A6959T", "T6961C", "-6963A", "-6968A", "-6969C", "-6970A", "-6973T", "-6976G", "-6979A", "-6980T", "-6981G", "-6982G", "-6983A", "-6984C", "-6985A", "-6995G", "-6996G", "-6997G", "-6999T", "-7000A", "A7007-", "-7009A", "C7014A", "A7036G", "A7037C", "G7055A", "G7092C", "C7099T", "T7114C", "A7133T", "A7219G", "C7250A", "A7294G", "C7373T", "T7403A", "C7429T", "G7508A", "G7519A", "A7553C", "A7590T", "G7594A", "A7620G", "A7629G", "G7633C", "C7651A", "G7660A", "C7722T", "G7753A", "A7790G", "G7791A", "G7868A", "T7880G", "T7888G", "T7893G", "C7939T", "C8028T", "T8047C", "T8097C", "C8103T", "A8128T", "A8143G", "C8146A", "C8168T", "C8232T", "G8245A", "A8294C", "A8489C", "A8516G", "G8534A", "A8536G", "A8537G", "G8588A", "C8768T", "T8789G", "A8793C", "A8797T", "C8810A", "A8815C", "T8835C", "G8846A", "A8879G", "A8931C", "C8934A", "T8971C", "A9015G", "G9019T", "T9074G", "T9075C", "C9078T"], "INT": ["G82S", "V281M"], "RT-p51": ["E6D", "V8I", "K32Q", "T39L", "D123N", "I135K", "D237N", "L283I", "A286T", "V293I", "A360T", "I375V", "A376S", "K385R", "T386I", "T403A", "V435I"], "RT-p66": ["E6D", "V8I", "K32Q", "T39L", "D123N", "I135K", "D237N", "L283I", "A286T", "V293I", "I375V", "A376S", "K385R", "T386I", "T403A", "V435I", "L452I", "K454R", "E516D"], "gp120": ["V10I", "K57I", "E74D", "-106W", "-107R", "-109D", "-112A", "-113T", "-122E", "-123V", "-124G", "-125M", "V137L", "K140R", "N158D", "N160D", "V180I", "D202S", "N273Q", "T275I", "Q277K", "S278Y", "I281M", "Q287R", "L289W", "T292I", "K293G", "I295N", "R299K", "Q300R", "H302Y", "I305V", "S306T", "E309G", "S347T", "G361R", "-366E", "-368R", "N369Y", "S370N", "-372T", "-374K", "-375E", "-376W", "-377S", "N378S", "-381T", "-382G", "-383V", "-384N", "-385E", "T387K", "I395L", "G401R", "G413A", "T427S", "L466I"], "gp41": ["L34M", "V69I", "I84L", "N96I", "K106R", "D109G", "E110D", "T140I", "S163D", "K166N", "A189T", "L193V", "N195K", "V197G", "S242L", "L265S", "A267V", "A310V", "N331H"], "nef": ["Q50H", "D64E", "E65G", "D149E", "K151Q", "E152V", "D156E", "E158A", "M168I", "I197L"], "p17": ["I34L", "A67S", "L75V", "Y79F", "T109N"], "p2": ["T8S"], "p24": ["H87Q", "I115V"], "p6": ["L38S", "S40A", "S51L"], "p7": ["G4A", "R10K", "I12N", "I24L"], "pro": ["V13I", "N37D", "D60E"], "rev": ["P31S", "S67P", "T94S", "S99G", "H100N", "P107L"], "tat": ["E2D", "N7K", "R19K", "R57G", "T58P", "G61S", "P77L"], "vif": ["D45E", "K50R", "A62S", "R63K", "K91Q", "I109L", "E117D", "L125V", "K141N"], "vpr": ["V37P", "I60L", "F72Y", "T89L", "A93S"], "vpu": ["W41R", "R47I", "A63E", "V65L", "V79I"]}, "labels": {"aa": "INT: G82S, V281M; RT-p51: E6D, V8I, K32Q, T39L, D123N, I135K, D237N, L283I, A286T, V293I, A360T, I375V, A376S, K385R, T386I, T403A, V435I; RT-p66: E6D, V8I, K32Q, T39L, D123N, I135K, D237N, L283I, A286T, V293I, I375V, A376S, K385R, T386I, T403A, V435I, L452I, K454R, E516D; gp120: V10I, K57I, E74D, -106W, -107R, -109D, -112A, -113T, -122E, -123V, -124G, -125M, V137L, K140R, N158D, N160D, V180I, D202S, N273Q, T275I, Q277K, S278Y, I281M, Q287R, L289W, T292I, K293G, I295N, R299K, Q300R, H302Y, I305V, S306T, E309G, S347T, G361R, -366E, -368R, N369Y, S370N, -372T, -374K, -375E, -376W, -377S, N378S, -381T, -382G, -383V, -384N, -385E, T387K, I395L, G401R, G413A, T427S, L466I; gp41: L34M, V69I, I84L, N96I, K106R, D109G, E110D, T140I, S163D, K166N, A189T, L193V, N195K, V197G, S242L, L265S, A267V, A310V, N331H; nef: Q50H, D64E, E65G, D149E, K151Q, E152V, D156E, E158A, M168I, I197L; p17: I34L, A67S, L75V, Y79F, T109N; p2: T8S; p24: H87Q, I115V; p6: L38S, S40A, S51L; p7: G4A, R10K, I12N, I24L; pro: V13I, N37D, D60E; rev: P31S, S67P, T94S, S99G, H100N, P107L; tat: E2D, N7K, R19K, R57G, T58P, G61S, P77L; vif: D45E, K50R, A62S, R63K, K91Q, I109L, E117D, L125V, K141N; vpr: V37P, I60L, F72Y, T89L, A93S; vpu: W41R, R47I, A63E, V65L, V79I"}}}]}, {"name": "D_NODE_0000025", "node_attrs": {"div": 0.08471000000000001, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C1790T", "T1828C", "G3173A", "C5850T", "-6190C", "-6218G", "A6990-", "A7525C", "C7801A", "T8492G", "T8701A", "T8947A"], "RT-p51": ["A360T"], "gp120": ["T35A", "S373-"], "gp41": ["R74S"], "nef": ["F202Y"], "p6": ["L50S"]}, "labels": {"aa": "RT-p51: A360T; gp120: T35A, S373-; gp41: R74S; nef: F202Y; p6: L50S"}}, "children": [{"name": "D_NODE_0000026", "node_attrs": {"div": 0.08648, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G677A", "A1446T", "A1567G", "A2566G", "-6175G", "-6225T", "A6693G", "A7148G", "T7690G", "T7880G", "A8093C", "T8887A"], "RT-p51": ["D121Y"], "RT-p66": ["D121Y"], "gp120": ["T181S", "-366T", "A432V"], "gp41": ["L193V", "I264L"], "nef": ["H116N", "M182K"], "p2": ["T8S"], "p7": ["K34R"], "rev": ["N82T", "N86S"], "tat": ["R19Q"]}, "labels": {"aa": "RT-p51: D121Y; RT-p66: D121Y; gp120: T181S, -366T, A432V; gp41: L193V, I264L; nef: H116N, M182K; p2: T8S; p7: K34R; rev: N82T, N86S; tat: R19Q"}}, "children": [{"name": "D_NODE_0000027", "node_attrs": {"div": 0.09075, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G455A", "G1090A", "C1453T", "G1495A", "C1535T", "G1781A", "A1804G", "G2656A", "T2737C", "C2831T", "A3173G", "C4426T", "A5159G", "G5448A", "T5484G", "A5954G", "G5957A", "-6192C", "-6195G", "-6196T", "-6207G", "-6212A", "-6213C", "G6228A", "G6263A", "G6280A", "A6316G", "G6326A", "C6336G", "C6599A", "C6683A", "A6767G", "A6836C", "-6957A", "-6963G", "-6983T", "-6985A", "-6996A", "-6999G", "-7000A", "-7009A", "C7102A", "A7177G", "A7186G", "G7508A", "A7533G", "G7918A", "A8105G", "T8213C", "C8688A", "G8846A", "T8847A", "A8947T", "A9018C"], "RT-p51": ["T360A"], "RT-p66": ["T360A"], "gp120": ["G4E", "K34E", "A35T", "-106W", "-113T", "-126M", "V137I", "T161S", "L249I", "Q277K", "I305V", "K328Q"], "gp41": ["V69I", "K77R", "T268A", "F304L"], "nef": ["E65G", "M168I", "Y202F"], "p24": ["S120N"], "p6": ["K42R"], "p7": ["R10K"], "vpr": ["T19A"]}, "labels": {"aa": "RT-p51: T360A; RT-p66: T360A; gp120: G4E, K34E, A35T, -106W, -113T, -126M, V137I, T161S, L249I, Q277K, I305V, K328Q; gp41: V69I, K77R, T268A, F304L; nef: E65G, M168I, Y202F; p24: S120N; p6: K42R; p7: R10K; vpr: T19A"}}, "children": [{"name": "AF484506", "node_attrs": {"div": 0.1238, "accession": "AF484506", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1998.0}, "Strain_name": {"value": "98UG57132"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "G365A", "A380C", "A412G", "A418G", "A424G", "G452A", "T466A", "T485C", "A508T", "G520C", "G534T", "C540A", "C558A", "G607A", "G614A", "A645G", "A660G", "A686G", "A704G", "C722T", "T731C", "A774C", "A776C", "T852A", "A860G", "A878T", "C879T", "A880C", "A881T", "C890T", "A891T", "C902T", 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"T5170C", "G5185A", "G5187A", "A5215G", "A5225G", "T5237C", "A5248G", "A5302G", "T5326C", "A5345G", "G5359A", "A5370G", "G5382A", "T5391C", "G5433T", "G5463A", "G5482T", "T5492C", "G5538A", "C5551G", "C5569A", "G5652A", "T5704G", "A5709C", "T5728A", "T5826C", "G5842A", "T5857G", "C5867G", "G5869A", "T5884G", "G5912A", "A5947G", "G5962A", "A5972G", "A6015G", "A6022G", "A6024T", "A6065G", "G6076A", "T6166A", "G6167A", "A6168C", "-6179G", "-6180T", "-6181C", "-6186C", "-6194A", "-6198A", "-6199T", "-6200G", "-6201T", "-6202C", "-6203A", "-6204C", "-6205T", "-6206G", "-6208T", "-6209G", "-6210C", "-6211C", "-6214T", "-6215A", "-6216G", "-6217T", "-6220G", "-6221A", "-6222A", "-6223C", "-6224A", "G6260A", "A6261G", "G6313A", "T6328C", "A6333C", "T6334C", "G6382A", "A6395T", "T6433A", "A6442G", "A6465C", "G6466A", "G6475A", "T6493C", "G6547A", "T6551C", "A6574G", "T6618C", "G6631C", "G6640A", "-6689A", "-6690C", "G6693A", "T6720A", "A6723T", "A6728G", "A6733G", "A6742G", "A6790G", "T6825G", "T6829G", "A6842G", "T6849A", "C6876T", "A6900C", "-6956G", "-6958A", "A6962G", "-6984T", "-6990G", "A6992G", "-6993C", "-6994G", "-6995G", "-6997G", "-6998G", "-7002A", "-7004G", "-7005A", "-7006T", "-7008C", "G7056A", "A7100C", "A7149T", "T7150A", "G7239A", "C7256A", "G7293A", "A7312C", "G7513A", "A7590C", "A7627G", "A7629T", "A7641G", "G7668A", "C7678A", "A7701G", "A7705G", "C7748T", "A7799C", "T7879A", "G7880A", "A7953G", "G7992A", "T8016C", "C8028T", "A8036G", "G8079A", "G8087A", "A8092T", "G8110A", "C8189T", "G8231A", "G8255A", "G8276A", "T8321G", "T8322C", "A8335G", "A8438T", "T8483C", "C8494A", "C8510A", "A8537C", "T8546C", "A8567G", "T8568A", "A8570G", "A8636T", "A8686T", "A8717G", "A8739G", "A8793G", "A8804G", "G8808A", "C8840T", "C8849T", "C8867T", "A8898G", "T8903C", "A8912C", "A8931G", "C8934A", "G8942A", "T8974G", "A9005G", "G9019T", "T9071C", "T9095G"], "INT": ["D167E", "T218I", "A265V"], "RT-p51": ["I5V", "E6K", "K11Q", "L34I", "D123G", "V293I", "T400A", "V435A"], "RT-p66": ["I5V", "E6K", "K11Q", "L34I", "D123G", "V293I", "T400A", "V435A", "T470I", "L491V", "S519N", "I559V"], "gp120": ["S1R", "Q5D", "A20T", "I40V", "Q54R", "I56M", "K57I", "N71D", "E105T", "-107K", "N108G", "-109D", "T110N", "N111V", "-112T", "-114T", "-115T", "-116S", "-117A", "-118P", "-119N", "-120V", "-121T", "-122E", "-123N", "-124I", "-125E", "E136R", "N160T", "K204T", "I255T", "Q259H", "L289Y", "Y290F", "T292A", "L324R", "T330A", "I332N", "P341L", "N349T", "-368E", "S370G", "-372L", "N379S", "T380A", "-381E", "-382G", "-383N", "-384D", "-385T", "G401E", "N416Q", "N435S", "S436Q", "R462K", "L468I", "R480K"], "gp41": ["N96T", "D109V", "N113G", "R122K", "D125E", "N133S", "K166Q", "V193I", "D217G", "G230D", "V238A", "S242L", "I245V", "R259H", "D262N", "L263F", "A310T", "V318I", "A325T", "L340A"], "nef": ["T51N", "L76M", "E98D", "Y115F", "I133V", "K151E", "D156N", "C169S", "N186D", "I197V"], "p17": ["E15D", "N26S", "K28R", "K30R", "F44Y", "K58I", "G62A", "A67S", "Q69K", "L75I", "R91K", "I104V", "T109A"], "p2": ["N9K", "A10I", "I13V"], "p24": ["I15L", "S41T", "Q50S", "T54S", "G116A", "N183T", "A208Q"], "p6": ["L35M", "S50*"], "p7": ["K7R", "K11R", "I12T", "I24L", "K26R", "R34K", "K41R"], "pro": ["I36M", "E65D", "V77I"], "rev": ["S8N", "D11E", "Y63C", "R80K", "T82S", "D88N", "T114I"], "tat": ["Q19S", "V36L", "I39T", "P59A", "H65N", "T82A"], "vif": ["Y30H", "K34Q", "L39M", "I109T", "H127K"], "vpr": ["S28N", "V37M", "S41G", "Y45H", "I74T", "T84I", "R85Q", "T89A", "A93T", "S96P"], "vpu": ["L33V", "K34N", "W41R", "V79I"]}, "labels": {"aa": "INT: D167E, T218I, A265V; RT-p51: I5V, E6K, K11Q, L34I, D123G, V293I, T400A, V435A; RT-p66: I5V, E6K, K11Q, L34I, D123G, V293I, T400A, V435A, T470I, L491V, S519N, I559V; gp120: S1R, Q5D, A20T, I40V, Q54R, I56M, K57I, N71D, E105T, -107K, N108G, -109D, T110N, N111V, -112T, -114T, -115T, -116S, -117A, -118P, -119N, -120V, -121T, -122E, -123N, -124I, -125E, E136R, N160T, K204T, I255T, Q259H, L289Y, Y290F, T292A, L324R, T330A, I332N, P341L, N349T, -368E, S370G, -372L, N379S, T380A, -381E, -382G, -383N, -384D, -385T, G401E, N416Q, N435S, S436Q, R462K, L468I, R480K; gp41: N96T, D109V, N113G, R122K, D125E, N133S, K166Q, V193I, D217G, G230D, V238A, S242L, I245V, R259H, D262N, L263F, A310T, V318I, A325T, L340A; nef: T51N, L76M, E98D, Y115F, I133V, K151E, D156N, C169S, N186D, I197V; p17: E15D, N26S, K28R, K30R, F44Y, K58I, G62A, A67S, Q69K, L75I, R91K, I104V, T109A; p2: N9K, A10I, I13V; p24: I15L, S41T, Q50S, T54S, G116A, N183T, A208Q; p6: L35M, S50*; p7: K7R, K11R, I12T, I24L, K26R, R34K, K41R; pro: I36M, E65D, V77I; rev: S8N, D11E, Y63C, R80K, T82S, D88N, T114I; tat: Q19S, V36L, I39T, P59A, H65N, T82A; vif: Y30H, K34Q, L39M, I109T, H127K; vpr: S28N, V37M, S41G, Y45H, I74T, T84I, R85Q, T89A, A93T, S96P; vpu: L33V, K34N, W41R, V79I"}}}, {"name": "AY713418", "node_attrs": {"div": 0.12225, "accession": "AY713418", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1993.0}, "Strain_name": {"value": "93UG_065"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A380G", "A389G", "A425G", "A461G", "C462A", "T473A", "G498C", "A516T", "T668C", "A702G", "G709A", "C713T", "A869G", "G908A", "G944A", "G956T", "A1002G", "C1013T", "A1017T", "A1079C", "C1175T", "T1244C", "A1292G", "C1316T", "G1394A", "A1404G", "T1427C", "A1450T", "A1454C", "G1455A", "C1456A", "G1458A", "A1602T", "C1676T", "A1700G", "T1741A", "A1760G", "A1768C", "T1791C", "G1794A", "C1828T", "G1835A", "G1988A", "A2008C", "A2160G", "G2201A", "T2209C", "C2326T", "A2329G", "A2340G", "A2344G", "A2350G", "C2464A", "C2488T", "A2579T", "C2589T", "G2704A", "A2715G", "G2881A", "A2915G", "A2956G", "C2975A", "A3030C", "G3098A", "C3266T", "G3316A", "G3334T", "G3398A", "C3415T", "T3466C", "G3467A", "A3481G", "A3490G", "T3567C", "A3625C", "A3651G", "C3665A", "A3674G", "G3679A", "G3685A", "C3691T", "T3746C", "A3760G", "G3814A", "T3976C", "G4060A", "C4072T", "G4642A", "T4702G", "T4826C", "C4844A", "A4901G", "T4943C", "A5045G", "A5128T", "G5131A", "T5182C", "T5224A", "G5226A", "G5279A", "T5296C", "T5356C", "G5382T", "A5396G", "C5397T", "C5412T", "A5431C", "G5432A", "C5539A", "A5548T", "C5611A", "A5612C", "G5652T", "C5659T", "A5700G", "G5702A", "A5708G", "G5712A", "T5850C", "G5856A", "T5859C", "T5860C", "G5865A", "A5866G", "C5916A", "A5918G", "A5938G", "T5971C", "C5974T", "A5995G", "C6010T", "C6046T", "C6110G", "C6139T", "T6154C", "A6174G", "-6179A", "-6180A", "-6181T", "-6186A", "A6188G", "-6194G", "A6197T", "-6198G", "-6199A", "-6200A", "-6201G", "-6202G", "-6203G", "-6204G", "-6205G", "-6208A", "-6209A", "-6210T", "-6211A", "-6214A", "-6215C", "-6216T", "-6217G", "G6218C", "A6219C", "-6220A", "T6225C", "A6226T", "A6229T", "A6233G", "A6236T", "A6273G", "G6274A", "A6275C", "A6278C", "C6281A", "A6318C", "A6324G", "A6329G", "A6333G", "C6337T", "C6340A", "G6345A", "A6346C", "C6396A", "G6458A", "G6463A", "A6464C", "A6490C", "A6525G", "T6536A", "G6572A", "T6618A", "A6654G", "C6658T", "C6660T", "G6664A", "T6676G", "G6681A", "A6684T", "A6686C", "G6687A", "T6688A", "A6691-", "T6696C", "-6697A", "-6698T", "-6699C", "-6700T", "-6701A", "-6702T", "C6707T", "C6708T", "C6721A", "T6724C", "C6729A", "A6730C", "A6731G", "A6733C", "T6735A", "G6743A", "C6758T", "C6766T", "A6780G", "T6794C", "T6850C", "A6854C", "C6876A", "T6898C", "T6953C", "G6954T", "-6956A", "-6958T", "A6960C", "A6965G", "C6966A", "-6968T", "-6969G", "-6970G", "-6971A", "-6972G", "-6973A", "-6974A", "-6975A", "-6976T", "-6977T", "-6978A", "-6984A", "A6986T", "-6990T", "T6991C", "-6993A", "-6994A", "-6995T", "-6997C", "-6998A", "A7001G", "-7002G", "A7007-", "C7014G", "A7063C", "C7094A", "G7132A", "A7138G", "A7149G", "T7156C", "G7158C", "C7160A", "C7250T", "A7322C", "C7373A", "G7375A", "G7399A", "T7400G", "G7459A", "T7462C", "C7463T", "C7525A", "A7531G", "A7553C", "A7572G", "A7590G", "G7628A", "A7629G", "G7630T", "G7676A", "A7696C", "G7773A", "A7790G", "G7791A", "G7831A", "G7835A", "C7930T", "C7931T", "T7968C", "C8077T", "T8164C", "T8218C", "T8268C", "G8304C", "G8323T", "T8366A", "T8375G", "A8402G", "G8412A", "T8440C", "A8458G", "C8480T", "T8495A", "C8499T", "C8514T", "A8537T", "C8652A", "A8653G", "C8669T", "T8770G", "C8771G", "T8786A", "A8801G", "G8848A", "C8868T", "A8909G", "A8923T", "T8932A", "A8935T", "T8971A", "G9008A", "T9075C"], "RT-p51": ["K22R", "E36K", "K82R", "D123E", "S162C", "T165I", "E207G", "I274V", "P294T", "E312A", "D335N", "E413D", "V435I"], "RT-p66": ["K22R", "E36K", "K82R", "D123E", "S162C", "T165I", "E207G", "I274V", "P294T", "E312A", "D335N", "E413D", "V435I", "V458I", "L491S", "Q524K", "K527E"], "gp120": ["S1N", "V2A", "T21N", "T22A", "Q86E", "-107R", "-109N", "-112A", "-125D", "K127E", "N128Y", "K140R", "K141Q", "K142Q", "Q143K", "Q155P", "D157G", "N159D", "N160S", "S181N", "D202N", "K204Q", "K212N", "K224R", "S228T", "E240K", "I255N", "N267S", "T269I", "N274K", "R276-", "S278I", "T279Q", "H280R", "I281T", "-282S", "-283I", "P285L", "T292N", "K293D", "I294K", "D297N", "H302Y", "E309G", "K334Q", "P341Q", "W367L", "-368N", "N369T", "T371E", "-372W", "-373R", "-374N", "T387R", "L414I", "N416K", "V432G", "N435T", "S436R", "N437K"], "gp41": ["M7L", "L24I", "L33V", "S74R", "I84L", "K90R", "N96S", "D109S", "N113D", "D125N", "S157N", "S163D", "M176I", "V178I", "L210F", "I222T", "V322A", "R334T", "L340F"], "nef": ["S8R", "I20M", "D24N", "V33A", "K39R", "P53S", "Q104R", "F143W", "C169N", "P176S", "K194M", "I197K", "K198L"], "p17": ["E55Q", "M61L", "R123G", "S125N"], "p2": ["A7V", "S8N", "A11-", "A12-"], "p24": ["E75D", "I91V", "M96L", "S225G"], "p6": ["I21K", "Q30P", "A39T", "S50L"], "p7": ["M46L"], "pro": ["V13I", "V64I", "K70N"], "rev": ["S8R", "P28F", "P77S", "S106P"], "tat": ["E2D", "N7S", "T58S", "S74F", "*87Q"], "vif": ["R19K", "L39W", "K181M", "G182D"], "vpr": ["Q8H", "V37I", "H40Q", "S41N", "A59T", "A93S"], "vpu": ["Q2T", "R32K", "K34R"]}, "labels": {"aa": "RT-p51: K22R, E36K, K82R, D123E, S162C, T165I, E207G, I274V, P294T, E312A, D335N, E413D, V435I; RT-p66: K22R, E36K, K82R, D123E, S162C, T165I, E207G, I274V, P294T, E312A, D335N, E413D, V435I, V458I, L491S, Q524K, K527E; gp120: S1N, V2A, T21N, T22A, Q86E, -107R, -109N, -112A, -125D, K127E, N128Y, K140R, K141Q, K142Q, Q143K, Q155P, D157G, N159D, N160S, S181N, D202N, K204Q, K212N, K224R, S228T, E240K, I255N, N267S, T269I, N274K, R276-, S278I, T279Q, H280R, I281T, -282S, -283I, P285L, T292N, K293D, I294K, D297N, H302Y, E309G, K334Q, P341Q, W367L, -368N, N369T, T371E, -372W, -373R, -374N, T387R, L414I, N416K, V432G, N435T, S436R, N437K; gp41: M7L, L24I, L33V, S74R, I84L, K90R, N96S, D109S, N113D, D125N, S157N, S163D, M176I, V178I, L210F, I222T, V322A, R334T, L340F; nef: S8R, I20M, D24N, V33A, K39R, P53S, Q104R, F143W, C169N, P176S, K194M, I197K, K198L; p17: E55Q, M61L, R123G, S125N; p2: A7V, S8N, A11-, A12-; p24: E75D, I91V, M96L, S225G; p6: I21K, Q30P, A39T, S50L; p7: M46L; pro: V13I, V64I, K70N; rev: S8R, P28F, P77S, S106P; tat: E2D, N7S, T58S, S74F, *87Q; vif: R19K, L39W, K181M, G182D; vpr: Q8H, V37I, H40Q, S41N, A59T, A93S; vpu: Q2T, R32K, K34R"}}}]}, {"name": "D_NODE_0000028", "node_attrs": {"div": 0.08793000000000001, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G518A", "-6223A", "G6818A", "T6961-", "A6962-", "A7001-", "T7003-", "T7153A", "G7315A", "G8595T", "C8934A"], "gp120": ["N158D", "G322R", "K328N", "N378-", "T380-"], "nef": ["V85L"], "p17": ["M61I"]}, "labels": {"aa": "gp120: N158D, G322R, K328N, N378-, T380-; nef: V85L; p17: M61I"}}, "children": [{"name": "D_NODE_0000029", "node_attrs": {"div": 0.09146000000000001, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C413G", "G740A", "C1334T", "G1394A", "C1676T", "A1743G", "A2170G", "C2909T", "C3763T", "A4949G", "A5213C", "T5214C", "T5356C", "G5668A", "C5756A", "T5826C", "-6179G", "-6180C", "-6192C", "-6200A", "-6214A", "A6273G", "A6395T", "G6458A", "T6493C", "A6605G", "-6689A", "-6690C", "G6779A", "A6780G", "-6956G", "-6974A", "-6975C", "-6980G", "-6990A", "-6993G", "-6994T", "A7149T", "T7150A", "C7160A", "G7162T", "G7508A", "G7640A", "T8047C", "C8048T", "G8317A", "C8480T", "A8597C", "A8931G", "T8932A"], "RT-p51": ["P272S"], "RT-p66": ["P272S"], "gp120": ["-106W", "-107K", "-109A", "K140R", "D202N", "N251D", "E309R", "-373S", "P389Q", "N433K"], "gp41": ["V69I"], "nef": ["I197E"], "p17": ["N26K"], "p2": ["A11N"], "p6": ["T22A"], "rev": ["S67L"], "vpr": ["V37P"], "vpu": ["V21I", "A50E"]}, "labels": {"aa": "RT-p51: P272S; RT-p66: P272S; gp120: -106W, -107K, -109A, K140R, D202N, N251D, E309R, -373S, P389Q, N433K; gp41: V69I; nef: I197E; p17: N26K; p2: A11N; p6: T22A; rev: S67L; vpr: V37P; vpu: V21I, A50E"}}, "children": [{"name": "AF484489", "node_attrs": {"div": 0.12343000000000001, "accession": "AF484489", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UGE23438"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A424G", "T466A", "A508G", "A556C", "T575C", "G607A", "G618A", "A677G", "C688T", "A706G", "G709A", "G712A", "G771C", "A774T", "C794T", "A857G", "A923C", "A941G", "A1070G", "A1073G", "G1078C", "G1090A", "A1109G", "C1175T", "T1289C", "A1340G", "G1430A", "C1456T", "A1475G", "T1501A", "C1517T", "G1532A", "G1562A", "G1697A", "-1746T", "-1747C", "-1748C", "C1749T", "T1752-", "C1753-", "T1754-", "A1793G", "C1828A", "G1835A", "G1840A", "A1900G", "T1986A", "G1988A", "T2062C", "C2083T", "T2171C", "A2227G", "G2298A", "T2386C", "C2393T", "T2467C", "G2469A", "C2485T", "C2684G", "A2715G", "C2797T", "T2806C", "G2816A", "A2828G", "A2840C", "A2842G", "A2887G", "A2914G", "A2920G", "G2984A", "A3127G", "G3169A", "A3192G", "G3316A", "T3342A", "G3385A", "T3412A", "T3433C", "G3442A", "A3503T", "T3505G", "A3651G", "A3659G", "A3768G", "A3770G", "C3778T", "C3892T", "C3908A", "T3991C", "G4092C", "C4140T", "A4261T", "T4276G", "A4293G", "C4321T", "G4353A", "C4426T", "C4428T", "C4501T", "C4534T", "G4573A", "A4694T", "T4706C", 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"T8268C", "A8288G", "T8292G", "A8297G", "T8321G", "T8322C", "G8393A", "A8402G", "G8412A", "A8413G", "A8438T", "C8471T", "T8511C", "C8514T", "G8534C", "A8536G", "C8590G", "T8595C", "T8611A", "A8636T", "A8660G", "G8666A", "C8687T", "A8746T", "G8753A", "C8869T", "T8881C", "T8883C", "A8887T", "A8906G", "A8909G", "A9005G", "T9071C", "G9132A"], "INT": ["L45I", "G106A", "T122I", "D167E", "K173R", "G193E", "T218I"], "RT-p51": ["S68N", "R125K", "Q197E", "E207G", "V241I", "K245E", "K249Q", "E297K", "K366R", "F416Y"], "RT-p66": ["S68N", "R125K", "Q197E", "E207G", "V241I", "K245E", "K249Q", "E297K", "K366R", "F416Y", "T470S", "I522V", "K558R", "I559V"], "gp120": ["Q5K", "S32A", "K34E", "I40V", "Q54R", "N71H", "N111A", "-112T", "-113A", "-114L", "-115N", "-116R", "-117T", "-118E", "-119E", "-120I", "-121G", "-122M", "-123K", "K127-", "H145Y", "I156L", "D158G", "N159D", "K203E", "K204T", "K212T", "E240K", "I242V", "L249I", "T265S", "N273K", "N274T", "T275M", "H280P", "P285I", "A288V", "L289Y", "T292K", "K293Q", "I295V", "D297N", "R299K", "H302Y", "R307K", "A308T", "N311H", "K312N", "Q315Y", "Q316Y", "A318T", "K319N", "R322K", "D323T", "T329S", "T330E", "I332T", "G361R", "S365G", "W367Y", "-368D", "N369T", "S370Y", "T371D", "-372T", "-380G", "-381T", "-382G", "-383S", "-384E", "-385N", "I395M", "L414T", "S418L", "N435S", "S436T", "I463L", "K472E", "K474R"], "gp41": ["L34M", "L54M", "H91L", "M118I", "T140A", "K166Q", "M176I", "E223G", "E225A", "R233K", "T268A", "W286G", "F304L", "T306I", "I321V", "V322A", "I329V", "L330R", "I332V", "L340A"], "nef": ["I20M", "D24S", "W57R", "E65G", "A83G", "F90Y", "E98D", "N116H", "Y135F", "P176L", "V180A", "K182M"], "p17": ["K30R", "F44Y", "K58R", "E74A", "R91K", "A95T", "A118V", "N124S", "S125N", "S126N"], "p2": ["A12V"], "p24": ["A14P", "I15L", "G116A", "S120N"], "p6": ["-23S", "P24S", "S25-", "S50*"], "p7": ["I12N"], "pro": ["V13I", "L63H", "V64I"], "rev": ["R43S", "V104G"], "tat": ["E9D", "Q19S", "Q35P", "I39V", "T58P"], "vif": ["Q36H", "V66I", "A116T", "S186N", "*193W"], "vpr": ["S28H", "L42I", "I63V", "Q77H", "T84A"], "vpu": ["V5E", "L7S", "L33V", "V65A", "D78N"]}, "labels": {"aa": "INT: L45I, G106A, T122I, D167E, K173R, G193E, T218I; RT-p51: S68N, R125K, Q197E, E207G, V241I, K245E, K249Q, E297K, K366R, F416Y; RT-p66: S68N, R125K, Q197E, E207G, V241I, K245E, K249Q, E297K, K366R, F416Y, T470S, I522V, K558R, I559V; gp120: Q5K, S32A, K34E, I40V, Q54R, N71H, N111A, -112T, -113A, -114L, -115N, -116R, -117T, -118E, -119E, -120I, -121G, -122M, -123K, K127-, H145Y, I156L, D158G, N159D, K203E, K204T, K212T, E240K, I242V, L249I, T265S, N273K, N274T, T275M, H280P, P285I, A288V, L289Y, T292K, K293Q, I295V, D297N, R299K, H302Y, R307K, A308T, N311H, K312N, Q315Y, Q316Y, A318T, K319N, R322K, D323T, T329S, T330E, I332T, G361R, S365G, W367Y, -368D, N369T, S370Y, T371D, -372T, -380G, -381T, -382G, -383S, -384E, -385N, I395M, L414T, S418L, N435S, S436T, I463L, K472E, K474R; gp41: L34M, L54M, H91L, M118I, T140A, K166Q, M176I, E223G, E225A, R233K, T268A, W286G, F304L, T306I, I321V, V322A, I329V, L330R, I332V, L340A; nef: I20M, D24S, W57R, E65G, A83G, F90Y, E98D, N116H, Y135F, P176L, V180A, K182M; p17: K30R, F44Y, K58R, E74A, R91K, A95T, A118V, N124S, S125N, S126N; p2: A12V; p24: A14P, I15L, G116A, S120N; p6: -23S, P24S, S25-, S50*; p7: I12N; pro: V13I, L63H, V64I; rev: R43S, V104G; tat: E9D, Q19S, Q35P, I39V, T58P; vif: Q36H, V66I, A116T, S186N, *193W; vpr: S28H, L42I, I63V, Q77H, T84A; vpu: V5E, L7S, L33V, V65A, D78N"}}}, {"name": "AF484481", "node_attrs": {"div": 0.12430000000000002, "accession": "AF484481", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UGB25647"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G455A", "C456T", "A488G", "A497G", "A516C", "G520A", "A556G", "C558A", "G603A", "A605G", "T635C", "A638G", "A672G", "A676G", "C691A", "C747T", "A959G", "C978A", "A986C", "C1061T", "C1103T", "C1220T", "G1256A", "T1331C", "T1344C", "C1453T", "G1455A", "C1456A", "G1458A", "G1487A", "C1650T", "C1658G", "A1703T", "A1709G", "A1715G", "A1745C", "G1764A", "A1770G", "G1784A", "C1853T", "T1895G", "A1918G", "C1954T", "A2007G", "C2211G", "A2212G", "A2215C", "A2216T", "A2227C", "G2305A", "T2365C", "A2368G", "T2386A", "T2479C", "T2499C", "A2579T", "G2580A", "A2602G", "A2612C", "G2629A", "G2683A", "C2719T", "A2734G", "A2752G", "A2773C", "C2831T", "G2833A", "A2845C", "G2881A", "C2942A", "G2951A", "C2978T", "C3033A", "T3045G", "A3091G", "A3109G", "A3225T", "A3292C", "T3331G", "C3500A", "C3538T", "A3574G", "A3642C", "T3644G", "G3715A", "T3742C", "A3825G", "T3943C", "A4000C", "T4110C", "C4141T", "T4258C", "C4286T", "G4354A", "G4495A", "A4525G", "G4652A", "T4674C", "A4684G", "C4725T", "C4730T", "A4786G", "A4857C", "T4943C", "A4956C", "C4975T", "A5267G", "T5275A", "A5282C", "A5299G", "A5345G", "A5385C", "A5431C", "G5432A", "A5444G", "C5466T", "T5478C", "G5482T", "T5484A", "A5548T", "G5561A", "T5617C", "G5652A", "A5656T", "G5699A", "T5739C", "A5742G", "T5799C", "A5840G", "C5974T", "A6016T", "A6120C", "-6181C", "-6186A", "-6194A", "-6195A", "-6196G", "-6198T", "-6199G", "-6201A", "-6202T", "-6203G", "-6204A", "-6205G", "-6206A", "-6207C", "-6208C", "-6209A", "-6210C", "-6211T", "-6212C", "-6213A", "-6215G", "-6216A", "-6217G", "-6220C", "-6221A", "-6222C", "-6224G", "T6225G", "G6228T", "A6229G", "A6230-", "T6231-", "G6232-", "A6236T", "A6251G", "G6263C", "C6281A", "A6282G", "G6313A", "A6318C", "T6328C", "A6330G", "C6336T", "G6368A", "G6392A", "C6397T", "T6418C", "A6462G", "A6489G", "C6496A", "T6523C", "T6541C", "C6545T", "T6613A", "A6616G", "T6668A", "A6679C", "C6683A", "G6712A", "C6713G", "A6714C", "A6715T", "G6716T", "A6718T", "T6719C", "A6731G", "A6733T", "T6760C", "C6766T", "C6777A", "A6778G", "C6835T", "A6837C", "G6838A", "T6849A", "T6850G", "T6860C", "C6861A", "G6894T", "C6895G", "T6928C", "-6957G", "-6958A", "-6961A", "-6962G", "-6963A", "-6968A", "-6969A", "-6970T", "-6971A", "-6972G", "-6973T", "-6976A", "-6977A", "-6978G", "-6979G", "-6981T", "-6982A", "-6983G", "-6984A", "-6985G", "-7008C", "-7009A", "C7020G", "G7026A", "A7027C", "G7088A", "C7094G", "A7101G", "A7111G", "T7147A", "A7153G", "G7158A", "A7161G", "A7163G", "T7165G", "T7172G", "G7239A", "T7243C", "A7246G", "A7261T", "A7269G", "A7307G", "A7322T", "A7487G", "T7604A", "T7622A", "C7625G", "G7630A", "G7668A", "A7669G", "T7681A", "A7701G", "C7702T", "A7763C", "G7791A", "G7839C", "A7858G", "G7862A", "T7866C", "T7879A", "G7880T", "C7931T", "G7992A", "C8005A", "T8007C", "T8008G", "C8103T", "A8104G", "T8112C", "G8173A", "T8182C", "G8185A", "A8191G", "A8196G", "A8219G", "C8223T", "G8255A", "G8276A", "T8280G", "A8303G", "G8304T", "C8306A", "A8311T", "G8323A", "G8329A", "C8336T", "A8388G", "T8414G", "G8424A", "A8438C", "T8495C", "G8531T", "C8601T", "G8666T", "C8688A", "A8701T", "T8747C", "G8807A", "A8824C", "T8829A", "A8844G", "C8849T", "C8868A", "G8870T", "G8875A", "G8916A", "A8917C", "C8921T", "A8923T", "G8936A", "G9006A", "C9012A", "T9014G", "G9019T", "T9029-", "-9033G", "T9095G"], "INT": ["N17S", "V112A", "H171Y"], "RT-p51": ["T39R", "E40D", "M41L", "E44D", "I135T", "S162Y", "K173Q", "M178I", "E250D", "L283I", "A286T", "P313Q", "V317G", "Q377L", "E399D"], "RT-p66": ["T39R", "E40D", "M41L", "E44D", "I135T", "S162Y", "K173Q", "M178I", "E250D", "L283I", "A286T", "P313Q", "V317G", "Q377L", "E399D", "L469I", "E516A", "L517V", "S519N"], "gp120": ["Q54H", "K89T", "-112G", "-113N", "N128Y", "I133V", "V137L", "Q143R", "Q155P", "N159S", "T161I", "A172T", "V180I", "K203R", "K212R", "Y272N", "Q277K", "H280R", "Q287A", "A288S", "K293D", "A308E", "N328T", "I332K", "S336H", "S347M", "-368G", "N369K", "S370D", "-372N", "-374T", "-375R", "-376V", "-377E", "-378N", "-380S", "-385T", "Q389R", "R391N", "E412K", "L414V", "N416S", "N437E", "F440V", "R462K", "K472R"], "gp41": ["I2V", "M7L", "I62V", "S101T", "S107T", "L108V", "D109E", "R122K", "N126K", "N133S", "K154Q", "S163N", "G179A", "V187I", "F188S", "V193L", "L210F", "G230D", "I235T", "A267V", "I270T", "N298S", "T306A", "T307I", "V318I", "A325T", "V326G", "R334V"], "nef": ["I16V", "D24E", "E28K", "E63D", "D64E", "L85F", "E108D", "Y120F", "N161T", "C163S", "M168V", "P176T", "R178K", "E192T", "K194M"], "p1": ["P7S", "H9Q"], "p17": ["I61L", "G62E", "E74G", "L75I", "E90K", "K113E", "K114R", "T119K"], "p2": ["A10V", "A12T"], "p24": ["L83I"], "p6": ["E29K", "K31E"], "pro": ["L33V", "K70R"], "rev": ["V16I", "P28L", "H53N", "S54A", "S86D", "V109I", "S112P", "G113R", "K115E"], "tat": ["N23S", "V36L", "T58S", "G62D"], "vif": ["Y30H", "K33R", "P47S", "K67R", "K91Q", "I124L", "T130I"], "vpr": ["T55A", "I60L", "S94R"], "vpu": ["I17L", "R31K", "D78G"]}, "labels": {"aa": "INT: N17S, V112A, H171Y; RT-p51: T39R, E40D, M41L, E44D, I135T, S162Y, K173Q, M178I, E250D, L283I, A286T, P313Q, V317G, Q377L, E399D; RT-p66: T39R, E40D, M41L, E44D, I135T, S162Y, K173Q, M178I, E250D, L283I, A286T, P313Q, V317G, Q377L, E399D, L469I, E516A, L517V, S519N; gp120: Q54H, K89T, -112G, -113N, N128Y, I133V, V137L, Q143R, Q155P, N159S, T161I, A172T, V180I, K203R, K212R, Y272N, Q277K, H280R, Q287A, A288S, K293D, A308E, N328T, I332K, S336H, S347M, -368G, N369K, S370D, -372N, -374T, -375R, -376V, -377E, -378N, -380S, -385T, Q389R, R391N, E412K, L414V, N416S, N437E, F440V, R462K, K472R; gp41: I2V, M7L, I62V, S101T, S107T, L108V, D109E, R122K, N126K, N133S, K154Q, S163N, G179A, V187I, F188S, V193L, L210F, G230D, I235T, A267V, I270T, N298S, T306A, T307I, V318I, A325T, V326G, R334V; nef: I16V, D24E, E28K, E63D, D64E, L85F, E108D, Y120F, N161T, C163S, M168V, P176T, R178K, E192T, K194M; p1: P7S, H9Q; p17: I61L, G62E, E74G, L75I, E90K, K113E, K114R, T119K; p2: A10V, A12T; p24: L83I; p6: E29K, K31E; pro: L33V, K70R; rev: V16I, P28L, H53N, S54A, S86D, V109I, S112P, G113R, K115E; tat: N23S, V36L, T58S, G62D; vif: Y30H, K33R, P47S, K67R, K91Q, I124L, T130I; vpr: T55A, I60L, S94R; vpu: I17L, R31K, D78G"}}}]}, {"name": "D_NODE_0000030", "node_attrs": {"div": 0.09273, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G407A", "A424G", "A774T", "G1301A", "G1452A", "G1495A", "C1550T", "C1613T", "G1736A", "T1754C", "T1796C", "A1906G", "A2715G", "C2899T", "T3165G", "G3737A", "T3970C", "C4569T", "G4677A", "A5213G", "G5432A", "C5602T", "C5659A", "A5718G", "A5784G", "T5857G", "T6178-", "A6686-", "G6687-", "T6688-", "A6691-", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6733G", "C6827T", "A6833-", "A6834-", "C6835-", "G6838C", "C6840A", "A6841G", "T6988-", "A7007-", "G7276A", "T7400C", "A7572G", "T7622A", "G7735A", "A7747C", "C7754A", "A7763C", "C8146A", "T8164C", "T8845A", "G8905A"], "INT": ["A265V"], "RT-p51": ["E207G", "M357R"], "RT-p66": ["E207G", "M357R", "S519N", "V548I"], "gp120": ["S1R", "N108-", "T110-", "N111-", "S278G", "L325F", "N327-", "T329K", "V432-", "N433-", "N434-"], "gp41": ["K90R", "S107T", "E148D", "Q151K", "K154Q", "I329V"], "p17": ["K30R", "I34L"], "p24": ["I15L"], "pro": ["I36M"], "rev": ["H100N"], "tat": ["Q19K", "V36L"], "vif": ["V31I"], "vpu": ["L18I"]}, "labels": {"aa": "INT: A265V; RT-p51: E207G, M357R; RT-p66: E207G, M357R, S519N, V548I; gp120: S1R, N108-, T110-, N111-, S278G, L325F, N327-, T329K, V432-, N433-, N434-; gp41: K90R, S107T, E148D, Q151K, K154Q, I329V; p17: K30R, I34L; p24: I15L; pro: I36M; rev: H100N; tat: Q19K, V36L; vif: V31I; vpu: L18I"}}, "children": [{"name": "AF484518", "node_attrs": {"div": 0.13082, "accession": "AF484518", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UGA03349"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A435T", "C471A", "C482T", "A508G", "G520A", "T536C", "T570C", "C583T", "C623T", "C641T", "A645G", "G648A", "A670G", "A699-", "C700-", "A701-", "A702-", "G703-", "A704-", "A705-", "A706-", "C707-", "T718C", "G740A", "G771T", "A785G", "C794T", "G815A", "C879A", "A880C", "G908A", "C947T", "A991C", "A1002G", "T1055C", "T1166C", "G1184A", "A1248C", "C1316T", "A1367G", "T1451C", "C1459T", "A1475G", "T1484C", "C1491A", "C1492A", "A1493G", "G1496A", "A1498T", "A1499C", "C1502T", "A1503-", "T1504-", "T1505-", "G1532A", "A1536C", "G1568A", "A1595G", "C1615A", "A1642G", "A1664G", "C1676T", "C1767G", "A1768G", "C1775-", "A1776-", "A1777-", "T1792C", "C1828A", "G1835A", "G1840A", "G1858A", "T1895G", "A1951G", "T1986C", "G1988A", "C2003T", "A2008G", "T2013C", "C2149T", "A2154G", "A2182G", "A2191G", "C2199T", "A2243G", "G2248A", "C2353T", "T2476C", "C2596T", "A2627G", "T2638C", "A2764G", "A2864C", "A2866G", "G2902A", "T2908C", "C2909T", "G2951A", "A3020C", "C3032A", "C3140T", "G3169A", "G3170A", "T3262C", "T3358C", "A3361G", "T3412C", "G3431T", "G3438A", "T3449A", "G3467A", "G3477A", "G3487A", "A3490G", "G3494A", "T3566C", "T3644A", "A3676C", "C3712T", "A3760G", "C3763T", "A3766G", "A3775C", "A3787G", "T3799A", "A3931G", "G4151C", "T4165C", "C4177T", "C4381T", "G4464A", "A4526C", "A4555G", "A4558T", "A4561G", "G4652C", "A4693G", "C4721A", "T4722A", "C4726T", "A4728C", "A4769C", "T4799A", "A4869G", "G4870C", "C4890T", "G4892A", "G4932A", "A4937C", "T4967C", "C4975A", "C5050A", "A5051C", "A5054T", "T5081C", "A5112G", "G5167A", "T5197C", "T5224C", "A5233G", "C5303T", "T5313C", "A5336G", "G5382C", "C5437G", "A5446T", "A5447C", "T5452C", "A5471G", "T5472G", "G5482C", "C5495A", "C5508T", "G5534A", "A5548C", "C5554A", "G5561A", "C5579A", "C5614T", "A5619G", "T5621A", "C5651T", "G5652A", "T5679C", "A5708G", "G5712A", "G5717A", "T5788C", "G5794A", "C5795A", "T5826C", "A5828G", "G5856A", "T5859C", "G5865A", "T5887C", "C5958A", "G5962A", "A5983G", "A6015G", "A6020T", "A6024T", "C6026A", "A6174G", "-6178G", "-6179A", "-6180A", "-6181T", "C6183A", "T6184C", "-6186C", "C6189T", "-6192A", "-6194G", "-6195C", "-6196C", "-6198C", "-6199C", "G6218-", "A6219-", "-6221G", "-6222A", "-6224A", "G6228A", "G6263C", "A6273G", "G6277A", "A6318C", "A6346G", "C6396A", "T6438A", "A6442G", "G6458A", "G6478A", "A6490T", "C6499T", "G6520A", "A6525G", "C6545T", "G6550A", "G6577C", "C6683A", "A6695G", "T6720A", "T6763C", "A6773G", "A6790G", "C6797T", "A6799T", "A6801G", "T6826A", "G6865C", "G6905A", "T6932A", "G6936T", "T6949C", "-6956A", "-6957A", "-6958T", "-6961T", "-6962A", "-6963G", "-6968T", "-6969G", "-6970G", "-6971G", "-6972G", "-6973T", "-6974A", "-6975A", "-6976T", "-6977G", "-6978A", "-6979G", "-6980A", "-6981G", "-6982T", "-6983G", "-6984C", "-6985A", "A6987T", "-6988G", "A6989G", "-6990G", "-6993A", "-6994T", "-6995G", "A7010-", "A7101G", "T7105C", "C7124T", "T7127C", "G7148A", "A7151G", "A7155G", "A7186G", "C7222T", "C7250T", "A7265T", "G7285A", "G7288A", "A7297G", "A7309T", "T7403C", "T7462C", "A7533G", "G7628A", "G7630A", "G7631T", "A7632C", "G7633A", "T7642G", "T7691A", "C7702T", "A7706C", "A7734G", "T7852C", "A7858G", "G7880A", "A7943C", "G8015C", "C8026A", "C8028T", "T8047C", "A8069T", "C8080A", "C8093A", "G8110A", "A8111G", "A8119G", "C8120A", "G8130A", "C8168T", "G8170C", "A8204G", "T8210C", "T8218C", "A8222G", "C8232T", "A8269G", "T8280G", "A8288G", "C8306A", "T8321G", "T8322C", "G8412A", "G8418A", "C8419G", "A8458G", "G8465A", "A8469G", "G8487A", "C8488G", "A8489T", "T8501A", "C8514G", "G8534C", "A8537G", "C8590G", "A8636T", "T8640A", "A8642G", "A8655C", "G8666T", "C8688A", "A8693G", "A8701T", "A8750C", "A8762G", "G8799A", "T8800C", "A8824C", "A8827T", "G8864T", "T8883C", "A8885G", "T8903C", "A8912C", "G8933A", "T8971A", "A9018C", "G9019-", "G9020-", "G9021-", "G9022-", "C9023-", "G9024-", "G9025-", "G9026-", "A9027-", "C9028-", "T9029-", "-9033G", "T9075C", "C9078A", "A9117G", "C9129T", "T9134A"], "INT": ["V126L", "S230N", "I251L"], "RT-p51": ["K20R", "T35I", "I50V", "M178V", "I257L", "P272S", "A286T", "I309L", "P313T", "G359S"], "RT-p66": ["K20R", "T35I", "I50V", "M178V", "I257L", "P272S", "A286T", "I309L", "P313T", "G359S", "A446S", "R448K", "L452I", "V458I", "R461K", "V467I", "L517I", "K527N"], "gp120": ["R1K", "V2A", "G4E", "A35E", "Q54R", "I56L", "K57I", "L58I", "E105-", "-122E", "-123W", "-124R", "-125E", "-126M", "V137L", "K140R", "Q155P", "S181N", "F195Y", "D202N", "K212N", "K224R", "E241D", "Q277K", "T279V", "L289Y", "R307G", "Q315Y", "Q316R", "G351R", "S360T", "G361V", "-368E", "-372W", "-373G", "-374N", "-375E", "-376S", "-377A", "-378M", "N379G", "-380N", "-381V", "I386-", "N416S", "-432G", "S436E", "N437S", "T471S"], "gp41": ["K77R", "D109K", "E110S", "N113E", "L130I", "I135L", "K144R", "V193I", "V238L", "F241L", "S242L", "S256C", "L264I", "I270V", "L273I", "R276H", "L289F", "I301V", "T307A", "A310V", "V326G", "L340A"], "nef": ["D24N", "A26R", "K39R", "I43V", "A49S", "L58V", "D64G", "A83G", "E98D", "L100M", "K105Q", "E108D", "Y120F", "V153T", "N161T", "N162I", "M168K", "E174D", "R188K"], "p1": ["K4R"], "p17": ["L46I", "K58R", "G62E", "Y79H", "A83V", "I104V", "E105K", "K112R", "T122-", "R123-", "N124-", "V128A"], "p2": ["A10T", "A12V"], "p24": ["A14S", "Q50T", "H87P", "I91V"], "p6": ["Q30G", "D32E", "K33-", "L38S", "S50*"], "p7": ["P9K", "R10-", "I24L", "T50N"], "pro": ["V13I", "L33V", "L63P", "V64I", "H69Y", "I72T"], "rev": ["D7N", "V16I", "L22I", "E32A", "G56A", "L60I", "S67P", "Q74L", "L78I", "T82N", "D88S", "T91D", "S106P", "P107L", "A108P"], "tat": ["E2D", "P21A", "K24S", "Y26H", "Y32W", "T40K", "R53K", "T58P", "Q60K", "G62D", "P68H"], "vif": ["K22N", "Q36R", "D45E", "C46S", "P47L", "N48H", "E61D", "S95A", "A116T", "E117D", "T130N", "T155N", "K176E"], "vpr": ["Q3R", "I70T", "T84I", "A93P"], "vpu": ["P3S", "V5E", "A15V", "K34R", "R37K", "A63K", "H74R"]}, "labels": {"aa": "INT: V126L, S230N, I251L; RT-p51: K20R, T35I, I50V, M178V, I257L, P272S, A286T, I309L, P313T, G359S; RT-p66: K20R, T35I, I50V, M178V, I257L, P272S, A286T, I309L, P313T, G359S, A446S, R448K, L452I, V458I, R461K, V467I, L517I, K527N; gp120: R1K, V2A, G4E, A35E, Q54R, I56L, K57I, L58I, E105-, -122E, -123W, -124R, -125E, -126M, V137L, K140R, Q155P, S181N, F195Y, D202N, K212N, K224R, E241D, Q277K, T279V, L289Y, R307G, Q315Y, Q316R, G351R, S360T, G361V, -368E, -372W, -373G, -374N, -375E, -376S, -377A, -378M, N379G, -380N, -381V, I386-, N416S, -432G, S436E, N437S, T471S; gp41: K77R, D109K, E110S, N113E, L130I, I135L, K144R, V193I, V238L, F241L, S242L, S256C, L264I, I270V, L273I, R276H, L289F, I301V, T307A, A310V, V326G, L340A; nef: D24N, A26R, K39R, I43V, A49S, L58V, D64G, A83G, E98D, L100M, K105Q, E108D, Y120F, V153T, N161T, N162I, M168K, E174D, R188K; p1: K4R; p17: L46I, K58R, G62E, Y79H, A83V, I104V, E105K, K112R, T122-, R123-, N124-, V128A; p2: A10T, A12V; p24: A14S, Q50T, H87P, I91V; p6: Q30G, D32E, K33-, L38S, S50*; p7: P9K, R10-, I24L, T50N; pro: V13I, L33V, L63P, V64I, H69Y, I72T; rev: D7N, V16I, L22I, E32A, G56A, L60I, S67P, Q74L, L78I, T82N, D88S, T91D, S106P, P107L, A108P; tat: E2D, P21A, K24S, Y26H, Y32W, T40K, R53K, T58P, Q60K, G62D, P68H; vif: K22N, Q36R, D45E, C46S, P47L, N48H, E61D, S95A, A116T, E117D, T130N, T155N, K176E; vpr: Q3R, I70T, T84I, A93P; vpu: P3S, V5E, A15V, K34R, R37K, A63K, H74R"}}}, {"name": "MF109710", "node_attrs": {"div": 0.1279, "accession": "MF109710", "clade_membership": {"value": "D"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "15228_1_72.3"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A360C", "T377G", "A380C", "A387C", "A412G", "A419G", "A435C", "A464C", "A599C", "G607A", "C626T", "A686-", "C707T", "C747T", "G762A", "T789C", "C875A", "A878T", "C879G", "A880G", "A881T", "C893T", "T917C", "C926T", "C950T", "G989A", "C1061T", "G1078C", "A1097G", "C1118A", "C1137T", "T1263A", "T1271G", "G1346A", "C1403T", "A1404G", "A1441G", "C1444T", "A1450C", "G1455-", "C1456-", "T1457-", "G1458-", "C1459-", "G1487A", "C1490T", "T1559C", "C1656T", "A1657G", "A1756G", "A1759C", "A1770G", "A1772G", "T1783-", "G1784-", "T1785-", "A1793G", "G1794A", "G1845A", "C1865T", "G1912A", "G1942A", "T1978C", "A1982G", "T1986G", "C1987T", "A2032G", "T2071C", "G2111A", "A2112C", "A2113C", "A2122G", "C2149G", "A2170G", "C2199G", "A2344G", "A2380C", "C2420T", "C2464T", "A2579T", "G2580A", "A2611G", "G2629T", "G2704A", "A2707G", "C2719T", "C2797T", "T2800C", "G2878A", "C2935T", "G2947A", "A2959G", "G2972A", "A2992T", "C3023T", "C3055T", "C3060T", "C3100T", "A3116G", "A3283G", "C3346T", "A3406G", "A3430G", "T3433A", "A3463G", "A3503G", "T3613C", "C3623T", "G3643A", "A3684G", "G3685A", "A3770G", "T3784C", "C3856T", "T3962C", "T4042C", "T4147G", "T4153C", "T4198C", "A4261T", "C4321T", "C4396T", "C4426T", "C4428T", "T4471C", "A4474C", "C4576T", "T4655C", "A4694T", "G4703A", "C4710A", "C4730T", "C4757T", "C4761T", "A4913G", "A4949G", "C5006T", "A5033C", "A5042C", "A5069G", "C5102T", "G5185A", "T5188A", "G5226A", "G5257A", "A5282C", "T5296A", "A5302G", "T5357G", "G5359A", "C5397A", "A5444C", "G5482T", "T5484G", "G5566A", "C5611-", "A5612-", "A5613-", "C5630G", "A5680T", "A5746G", "A5793G", "A5804G", "G5810A", "A5828T", "G5842A", "T5843A", "A5846T", "A5849T", "C5867A", "G5869T", "C5924T", "A5956G", "C5974T", "A5995C", "A6016G", "A6022G", "A6023C", "G6088A", "A6121G", "T6166G", "A6169C", "T6170C", "G6171T", "G6172T", "A6173G", "A6174T", "G6175T", "A6176-", "A6177-", "A6182-", "C6183-", "T6184-", "A6185-", "T6187-", "A6188-", "C6189-", "C6190-", "A6191-", "T6193-", "A6197-", "-6205G", "-6206G", "-6207A", "-6208A", "-6209A", "-6210T", "-6211T", "-6212A", "-6213T", "-6214A", "-6215C", "-6216G", "-6217G", "-6220A", "-6221A", "-6222G", "T6225C", "C6241T", "A6275C", "C6281A", "C6287T", "A6303G", "G6313A", "G6323-", "A6324-", "T6325-", "G6326-", "A6327-", "T6328-", "A6329-", "A6330-", "T6331-", "A6332-", "A6333-", "T6334-", "A6335-", "C6336-", "C6337-", "A6338-", "G6339-", "C6340-", "G6382A", "G6403A", "C6457T", "A6462T", "G6463A", "T6493C", "T6618C", "A6647T", "A6653C", "T6655G", "A6659G", "C6660T", "G6664A", "T6696C", "C6713A", "A6714G", "A6715T", "A6718T", "T6719A", "C6729T", "A6730G", "A6732G", "A6734G", "A6736G", "A6737G", "G6779A", "A6781C", "A6786C", "T6794A", "A6809G", "A6810G", "G6819A", "C6876A", "C6938T", "A6947-", "G6948-", "T6949-", "A6950-", "C6951-", "A6952-", "T6953-", "G6954-", "G6955-", "A6959-", "A6960-", "T6964-", "A6965-", "C6966-", "A6967-", "A6986-", "A6987-", "A6989-", "T6991-", "A6992-", "A7063C", "A7065G", "C7084T", "T7106A", "G7145-", "G7146-", "T7147-", "G7148-", "A7149-", "T7150-", "A7151-", "A7152-", "A7153-", "A7154-", "A7155-", "T7156-", "A7157-", "G7158-", "T7159-", "C7160-", "A7161-", "G7162-", "A7163-", "A7164-", "T7165-", "A7183G", "A7234G", "G7239A", "C7250A", "A7261G", "C7267T", "A7428G", "C7429T", "G7495A", "G7524A", "A7573G", "G7594A", "C7597T", "T7604A", "C7605A", "C7609T", "C7625T", "A7641G", "G7660A", "G7690T", "A7720C", "C7722T", "A7733C", "A7847G", "T7879A", "T7888A", "G7918A", "C7931T", "C8005A", "A8086C", "A8098G", "A8105G", "C8106G", "C8165A", "G8170A", "C8171A", "C8223T", "G8255A", "T8280C", "T8287-", "A8288-", "T8289-", "T8290-", "C8291-", "T8292-", "T8293-", "A8294-", "A8295-", "C8296-", "A8297-", "T8298-", "A8299-", "C8300-", "C8301-", "C8302-", "A8303-", "G8304-", "A8305-", "C8306-", "G8307-", "A8309G", "A8326G", "A8335G", "A8405-", "A8406-", "G8407-", "A8408-", "A8409-", "C8410-", "T8411-", "T8414G", "C8415A", "A8438C", "T8440C", "A8459G", "A8469C", "T8483C", "C8494A", "C8499T", "A8503C", "T8543G", "G8554C", "A8567G", "A8653C", "G8732A", "A8783G", "T8789C", "A8793C", "G8807A", "T8813A", "G8818A", "T8832C", "G8861A", "C8868A", "A8887G", "A8904C", "A8906C", "A8931C", "A8935T", "A8952-", "A8953-", "A8954-", "G8955A"], "INT": ["T218I"], "RT-p51": ["E6T", "T35R", "S162Y", "M178I", "V293I", "S322L", "I341V"], "RT-p66": ["E6T", "T35R", "S162Y", "M178I", "V293I", "S322L", "I341V", "T470A", "P510S", "K530R", "I559V"], "gp120": ["Q5N", "I56M", "K57Q", "E105D", "-106L", "-107V", "K141Q", "Q143K", "H145Y", "K150R", "D157-", "D158-", "N159-", "N160-", "T161-", "S162-", "S181T", "K203I", "I255T", "T265S", "N267Q", "T269V", "Q287S", "L289I", "T292M", "K293R", "I294V", "I295V", "E309N", "N311T", "L314I", "K319G", "R322K", "P341Q", "S365-", "T366-", "W367-", "N369-", "S370-", "T371-", "N379-", "K404R", "S418T", "G431-", "N435-", "S436-", "N437-", "R462K", "L466I"], "gp41": ["N42S", "S74N", "S101N", "D109E", "N113G", "Q139H", "T140I", "K144Q", "I182V", "N195K", "L210F", "R261S", "T268G", "L288I", "Q290K", "T307I", "V318I", "V326A", "L330R", "N331-", "I332-", "P333-", "R334-", "R335-", "I336-", "R337-"], "nef": ["R22-", "T23-"], "p1": ["H9C"], "p17": ["S9R", "D14E", "E15D", "K18Q", "N26S", "R91K"], "p2": ["Q6R", "A7V", "S8-", "N9-", "A10S", "A11-", "A12-"], "p24": ["V11I", "Q50G", "G116A", "S178T", "D180E", "S225G"], "p6": ["Q26R", "K27T", "K31E", "L35H", "Y36-", "A39T"], "p7": ["R10K"], "pro": ["G16E", "I62V", "L63R"], "rev": ["D11E", "P28L", "H53N", "N84D", "S86R", "S106H", "A108K"], "tat": ["N7K", "N23T", "A64T"], "vif": ["Q36H", "H42N", "I109M"], "vpr": ["S28R", "S41N", "I60L", "T84M", "R85Q"], "vpu": ["P3L", "L4V", "V5-", "A8G", "I25L", "R47G", "E66G", "G68E", "H74L", "V79N", "D80V", "D81V"]}, "labels": {"aa": "INT: T218I; RT-p51: E6T, T35R, S162Y, M178I, V293I, S322L, I341V; RT-p66: E6T, T35R, S162Y, M178I, V293I, S322L, I341V, T470A, P510S, K530R, I559V; gp120: Q5N, I56M, K57Q, E105D, -106L, -107V, K141Q, Q143K, H145Y, K150R, D157-, D158-, N159-, N160-, T161-, S162-, S181T, K203I, I255T, T265S, N267Q, T269V, Q287S, L289I, T292M, K293R, I294V, I295V, E309N, N311T, L314I, K319G, R322K, P341Q, S365-, T366-, W367-, N369-, S370-, T371-, N379-, K404R, S418T, G431-, N435-, S436-, N437-, R462K, L466I; gp41: N42S, S74N, S101N, D109E, N113G, Q139H, T140I, K144Q, I182V, N195K, L210F, R261S, T268G, L288I, Q290K, T307I, V318I, V326A, L330R, N331-, I332-, P333-, R334-, R335-, I336-, R337-; nef: R22-, T23-; p1: H9C; p17: S9R, D14E, E15D, K18Q, N26S, R91K; p2: Q6R, A7V, S8-, N9-, A10S, A11-, A12-; p24: V11I, Q50G, G116A, S178T, D180E, S225G; p6: Q26R, K27T, K31E, L35H, Y36-, A39T; p7: R10K; pro: G16E, I62V, L63R; rev: D11E, P28L, H53N, N84D, S86R, S106H, A108K; tat: N7K, N23T, A64T; vif: Q36H, H42N, I109M; vpr: S28R, S41N, I60L, T84M, R85Q; vpu: P3L, L4V, V5-, A8G, I25L, R47G, E66G, G68E, H74L, V79N, D80V, D81V"}}}]}]}]}, {"name": "D_NODE_0000031", "node_attrs": {"div": 0.08605, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T5237C", "T5478C", "G6227-", "G6228-", "A6229-", "C6457T", "-6689A", "-6690T", "C6827T", "A7089C", "C7722T", "A8216G", "C8590G", "A8935T"], "gp120": ["T279I", "K293N", "L325F", "-384D", "-385T", "N416K"], "gp41": ["N305D", "R334T"], "nef": ["D64E", "A83G", "K198L"], "vpr": ["Y45H"]}, "labels": {"aa": "gp120: T279I, K293N, L325F, -384D, -385T, N416K; gp41: N305D, R334T; nef: D64E, A83G, K198L; vpr: Y45H"}}, "children": [{"name": "D_NODE_0000032", "node_attrs": {"div": 0.08916, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C1453A", "A1770G", "T1790C", "G4145A", "T5356C", "G5482C", "C5659A", "G5865A", "-6194A", "-6195A", "A6251G", "C6287T", "A6733C", "G6818A", "A6986-", "A6987-", 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"A6173-", "A6174-", "A6176-", "A6177-", "T6178-", "-6181A", "-6186T", "T6187C", "C6190T", "-6192A", "T6193A", "-6196G", "A6197G", "-6198G", "-6199C", "-6201T", "G6218-", "A6219-", "A6226-", "-6227G", "-6228A", "-6229A", "A6234G", "G6263A", "A6275C", "G6277A", "T6287A", "C6293T", "T6295G", "T6299C", "T6301C", "G6311A", "G6313A", "G6323-", "A6324-", "T6325-", "G6326-", "A6327-", "T6328-", "A6329-", "A6330-", "T6331-", "A6332-", "A6333-", "T6334-", "A6335-", "C6336-", "C6337-", "A6338-", "G6339-", "C6340-", "A6354G", "T6361C", "G6368A", "G6379A", "G6380T", "A6395T", "C6412A", "G6463A", "C6496T", "A6525G", "C6545T", "A6574G", "A6674T", "A6689G", "A6693G", "A6714G", "T6720A", "A6725C", "C6729G", "C6733T", "C6758T", "C6766T", "A6767G", "A6773G", "G6774C", "C6777T", "A6780G", "A6786G", "C6807T", "T6849A", "A6856C", "C6858A", "A6934G", "G6948-", "T6949-", "A6950-", "C6951-", "A6952-", "T6953-", "G6954-", "G6955-", "A6959-", "A6960-", "T6961-", "A6962-", "T6964-", "A6965-", "C6966-", "A6967-", "A6992-", "A7001-", "T7003-", "A7007-", "C7019A", "C7094T", "A7096C", "T7105C", "C7124A", "G7129A", "A7148-", "A7149-", "T7150-", "A7151-", "A7152-", "T7153-", "A7154-", "A7155-", "T7156-", "A7157-", "G7158-", "T7159-", "C7160-", "A7161-", "G7162-", "A7163-", "A7164-", "T7165-", "G7182C", "C7201T", "A7275G", "G7339A", "G7399A", "T7403A", "A7447C", "C7463A", "A7533G", "C7597T", "G7608C", "C7623A", "T7624A", "A7629C", "T7630A", "G7640A", "C7651A", "A7669G", "A7701G", "A7713G", "A7765T", "A7801T", "T7880G", "T7906C", "T7921G", "G8085C", "C8103T", "A8104G", "C8106A", "A8119G", "T8155C", "T8164C", "C8165A", "T8176C", "G8216A", "T8218C", "C8232T", "A8269G", "A8272G", "-8290G", "C8302T", "G8304C", "T8332A", "A8338G", "T8366A", "T8369C", "A8396G", "A8406-", "G8407-", "A8408-", "A8409-", "C8410-", "T8411-", "G8412-", "C8415G", "A8425C", "G8492A", "T8501A", "C8504T", "G8535-", "A8536-", "A8537-", "A8564T", "A8567G", "T8582C", "G8595T", "A8660G", "T8740C", "A8746T", "C8771T", "A8780G", "T8786G", "C8790G", "G8808A", "C8812G", "A8844G", "T8845C", "G8864T", "T8883C", "A8886G", "G8933A", "A8952-", "A8953-", "A8954-"], "INT": ["V112I", "A125V", "G163A", "T206S", "I208L"], "RT-p51": ["E29K", "T39N", "R49K", "D121C", "M184V", "Q197R", "K211R", "L228R", "K245E", "I274V", "R277K", "K281R", "A288T", "R390K", "T403S"], "RT-p66": ["E29K", "T39N", "R49K", "D121C", "M184V", "Q197R", "K211R", "L228R", "K245E", "I274V", "R277K", "K281R", "A288T", "R390K", "T403S", "N447S", "L452I", "R461Y", "L491S", "K530R"], "gp120": ["S1K", "Q5E", "S32A", "I34V", "I40V", "N102D", "T104F", "N108-"], "gp41": ["L34M", "L54M", "K77R", "S102T", "S107K", "D109T", "N133S", "E137G", "T140I", "K154N", "K166N", "L193V", "F206L", "R261T", "A267V", "T268K", "L285V", "L288I", "D305N", "A310V"], "nef": ["S8R", "R22-", "T23-", "E24-"], "p17": ["M61I", "G62A", "L75I", "A83V", "A95K", "I104V", "T109N"], "p2": ["N9K"], "p24": ["A14S", "I15L", "V86P", "H87Q", "I91V", "M96I", "E98D", "T110N", "G116T", "A208Q"], "p6": ["A12M", "E19-", "I21A", "T22I", "-23T", "Q30P", "D32V", "L35Q", "A39T", "S40A", "S50L"], "p7": ["I12V", "K41G"], "pro": ["I15V", "I36M", "Q61E", "I72V", "V77I"], "rev": ["D7A", "A15V", "S67P", "E79D", "N86E", "T91A", "S106H"], "tat": ["E2D", "N23T", "V36K", "R53S"], "vif": ["K22N", "I51V", "E61D", "V98I", "T130I", "K157R", "R179K", "M189R"], "vpr": ["N16E", "S28R", "V37P", "H45Y", "R85P", "A93S"], "vpu": ["P3L", "L4Q", "V5-", "R37K", "K38R", "D40E", "V65G", "H74L"]}, "labels": {"aa": "INT: V112I, A125V, G163A, T206S, I208L; RT-p51: E29K, T39N, R49K, D121C, M184V, Q197R, K211R, L228R, K245E, I274V, R277K, K281R, A288T, R390K, T403S; RT-p66: E29K, T39N, R49K, D121C, M184V, Q197R, K211R, L228R, K245E, I274V, R277K, K281R, A288T, R390K, T403S, N447S, L452I, R461Y, L491S, K530R; gp120: S1K, Q5E, S32A, I34V, I40V, N102D, T104F, N108-; gp41: L34M, L54M, K77R, S102T, S107K, D109T, N133S, E137G, T140I, K154N, K166N, L193V, F206L, R261T, A267V, T268K, L285V, L288I, D305N, A310V; nef: S8R, R22-, T23-, E24-; p17: M61I, G62A, L75I, A83V, A95K, I104V, T109N; p2: N9K; p24: A14S, I15L, V86P, H87Q, I91V, M96I, E98D, T110N, G116T, A208Q; p6: A12M, E19-, I21A, T22I, -23T, Q30P, D32V, L35Q, A39T, S40A, S50L; p7: I12V, K41G; pro: I15V, I36M, Q61E, I72V, V77I; rev: D7A, A15V, S67P, E79D, N86E, T91A, S106H; tat: E2D, N23T, V36K, R53S; vif: K22N, I51V, E61D, V98I, T130I, K157R, R179K, M189R; vpr: N16E, S28R, V37P, H45Y, R85P, A93S; vpu: P3L, L4Q, V5-, R37K, K38R, D40E, V65G, H74L"}}}, {"name": "AF484498", "node_attrs": {"div": 0.1336, "accession": "AF484498", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UGK09259"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A360C", "G367A", "A380C", "A387G", "A388G", "A425G", "A435C", "G455A", "T495G", "A516C", "G520A", "C525T", "C558G", "A571T", "A585G", "C586T", "T591C", "A592T", "A604C", "G608A", "T635C", "A660G", "A673G", "A702G", "C723A", "T731C", "A742G", "C747A", "G771C", "G829A", "C830T", "T858C", "C890T", "G1078A", "A1079C", "A1089G", "G1205A", "T1262C", "G1301A", "G1313A", "C1316T", "G1355A", "T1362C", "G1394A", "A1404G", "T1406C", "C1444T", "A1450C", "A1453G", "C1459G", "A1461G", "C1490T", "C1492A", "A1536T", "A1543G", "G1552A", "A1664G", "C1676T", "-1746C", "-1747C", "-1748T", "C1749-", "C1750-", "C1751-", "G1766A", "G1769A", "G1770C", "C1782A", "T1785C", "A1819G", "G1848A", "A1861G", "A1907G", "C1987T", "A2007G", "A2023G", "A2119G", "C2195T", "T2237A", "G2248T", "G2363A", "T2456C", "C2464T", "A2470G", "T2499C", "A2515G", "A2524G", "C2533T", "A2627G", "T2694C", "A2697C", "G2714A", "A2722C", "G2725A", "T2737A", "G2902A", "C2909G", "C2942A", "A2995G", "A3001G", "C3023T", "G3154A", "T3165G", "A3173G", "G3238A", "A3302G", "A3409G", "T3412C", "T3493G", "A3529G", "A3574G", "A3622G", "A3630G", "G3643A", "T3652C", "G3667A", "A3674C", "G3718A", "C3763T", "C3826T", "T3850C", "C3857A", "G3859A", "T3898C", "T3904C", "G3989A", "A4063G", "A4064G", "C4069A", "A4090C", "A4107G", "G4112A", "C4146A", "G4151C", "C4162T", "C4204T", "A4222T", "A4225G", "G4262A", "G4263A", "G4354A", "G4495A", "A4543C", "G4573A", "A4644G", "A4664G", "G4673A", "T4674C", "G4677A", "T4679A", "C4692A", "A4728C", "T4772C", "A4784G", "A4786G", "A4838G", "A4859G", "A4911T", "T4943C", "A4949G", "A4952G", "T4967G", "T5003C", "A5049G", "C5053A", "T5072G", "A5215G", "T5221C", "A5225G", "G5257A", "A5282T", "A5285C", "A5291T", "T5296G", "C5306T", "A5312G", "A5369G", "C5412T", "A5431G", "G5432A", "T5436C", "G5448A", "A5491G", "A5537T", "A5544G", "A5547C", "A5548G", "C5551T", "A5555C", "G5565A", "A5601G", "T5626G", "T5627G", "T5704G", "A5748T", "G5775A", "G5781T", "G5794A", "T5799C", "G5800A", "G5805A", "G5839A", "T5850C", "A5861G", "G5957A", "C5958A", "A6030G", "A6061G", "A6065G", "G6076A", "C6115T", "A6173G", "-6175G", "-6179A", "-6181T", "C6183A", "T6184G", "-6186A", "A6188G", "-6192C", "-6196T", "-6198A", "-6199T", "-6201C", "-6202T", "-6203A", "-6204G", "-6205T", "-6206A", "-6207A", "-6208T", "-6209G", "-6210T", "-6211C", "-6212A", "-6213C", "-6214T", "-6215A", "-6216A", "-6217T", "-6220A", "-6221A", "-6222T", "-6223A", "-6224G", "-6225G", "A6237T", "A6273G", "A6288C", "A6330C", "T6331C", "G6403A", "C6412T", "T6438A", "A6442G", "A6465C", "C6469T", "A6488C", "G6547A", "G6553A", "A6571G", "C6648T", "C6658T", "C6673T", "C6683A", "A6686G", "T6688C", "A6695G", "-6697G", "A6703-", "C6729A", "T6772C", "T6794C", "A6820C", "G6821A", "A6836C", "A6855G", "G6905A", "T6932G", "G6935A", "C6938T", "-6947T", "G6948A", "A6950G", "C6951A", "-6956A", "-6957G", "-6958T", "-6963A", "-6968T", "-6969T", "-6970A", "-6971G", "-6972C", "-6973T", "-6974A", "-6975G", "-6976T", "-6977A", "-6978C", "-6979A", "-6980G", "-6981G", "-6982G", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "-6991C", "-6993G", "-6994T", "-6995A", "-6996A", "-6997A", "-6998G", "-6999G", "-7000G", "-7002A", "-7004G", "-7005A", "-7006C", "-7008G", "-7009T", "C7089A", "A7090G", "A7101C", "G7195A", "A7198G", "A7269G", "G7315A", "A7372C", "C7429T", "G7438A", "G7440T", "G7517C", "C7609T", "G7631A", "C7645T", "T7722C", "T7774C", "G7846A", "A7855G", "G7918A", "T7921C", "C7939T", "T8008A", "C8048T", "A8105G", "A8152G", "G8156T", "A8219G", "C8221T", "A8228G", "G8255A", "T8257C", "A8273G", "G8279T", "G8288-", "T8289-", "C8291-", "T8292-", "A8297G", "G8318A", "T8321G", "T8322C", "A8342G", "T8366C", "G8368A", "T8369G", "A8372G", "T8374G", "C8382T", "A8388G", "A8409G", "C8460T", "G8479C", "C8480A", "A8537G", "T8594A", "G8666C", "C8702T", "C8715G", "A8717T", "A8739G", "A8744G", "G8772A", "A8793G", "G8796A", "A8809C", "T8835C", "G8846A", "G8870T", "G8888A", "A8898G", "G8924A", "G8929A", "A8931C", "T8932A", "G8936A", "A8954C", "C8967T", "T9040C", "T9060A", "T9068C", "T9075C", "C9078T"], "INT": ["L28I", "V72I", "T97A", "K111R", "V113I", "T124N", "V126L", "G163K", "E256D"], "RT-p51": ["S48T", "V90I", "D121H", "I135T", "M178V", "I200T", "K201T", "E207K", "F214L", "P272A", "L283I", "M357R", "T360A", "T403A"], "RT-p66": ["S48T", "V90I", "D121H", "I135T", "M178V", "I200T", "K201T", "E207K", "F214L", "P272A", "L283I", "M357R", "T360A", "T403A", "K512R", "K527Q"], "gp120": ["S1N", "T3A", "A35K", "E59G", "N71D", "-106W", "-107E", "-109K", "T110D", "N111A", "-112T", "-113N", "K140R", "H145S", "N158D", "N159T", "F195Y", "D202N", "K204T", "K212Q", "T265V", "Q277K", "I281V", "L289F", "T292N", "I295V", "E309K", "Q315E", "G322S", "D323S", "K328Q", "K334R", "G351R", "S360A", "G361R", "S365Y", "-366E", "N369-", "S370-", "T371-", "-377S", "-381L", "-382A", "-383S", "T385S", "P389Q", "K416T", "M447I", "R462K", "I463L"], "gp41": ["R46M", "V72L", "S107T", "D109N", "E110K", "N113D", "T268A", "T306A", "I309V", "V318I", "R324G", "V326F", "V329-", "L330-"], "nef": ["S9K", "I10M", "V11G", "P14S", "I16V", "T23A", "H40Y", "S46T", "I101V", "E108D", "Q125D", "I133V", "E144K", "E152K", "D156A", "M168I", "C169N", "M182I", "N186D", "R196Q", "I197Q", "K204N", "D205K"], "p17": ["S9R", "G11E", "K18G", "S54A", "M61L", "G62E", "L75V", "Y79F", "T84V", "Y86L", "E90A", "T109A", "K113R", "Q130K"], "p2": ["A7V", "N9T", "E10G", "A12G", "I13V"], "p24": ["Q4R", "L6I", "A14P", "S33N", "G116D", "S120G", "S225G"], "p6": ["E31Q", "L35K", "Y36H", "N47S"], "p7": ["P9Q", "I24L", "K26R", "R29K", "K41R"], "pro": ["G17E", "N37D", "K70R"], "rev": ["S8C", "E10G", "E11A", "K14Q", "R17K", "P31S", "S54T", "S67L", "N86S", "I102V", "R103F"], "tat": ["R19E", "V36H", "I39V", "Q54L", "G57S", "T58A", "P59S", "Q60P", "P77L"], "vif": ["T20A", "M29I", "Y30H", "V31I", "Q36K", "N48H", "K67R", "I109L", "H127Q", "T155A", "P156Q"], "vpr": ["V37M", "S41G", "I60L", "I61L", "I63F", "I70V"], "vpu": ["V5E", "L7G", "L33V", "R47S", "E58D", "A63T", "V65M", "D78N"]}, "labels": {"aa": "INT: L28I, V72I, T97A, K111R, V113I, T124N, V126L, G163K, E256D; RT-p51: S48T, V90I, D121H, I135T, M178V, I200T, K201T, E207K, F214L, P272A, L283I, M357R, T360A, T403A; RT-p66: S48T, V90I, D121H, I135T, M178V, I200T, K201T, E207K, F214L, P272A, L283I, M357R, T360A, T403A, K512R, K527Q; gp120: S1N, T3A, A35K, E59G, N71D, -106W, -107E, -109K, T110D, N111A, -112T, -113N, K140R, H145S, N158D, N159T, F195Y, D202N, K204T, K212Q, T265V, Q277K, I281V, L289F, T292N, I295V, E309K, Q315E, G322S, D323S, K328Q, K334R, G351R, S360A, G361R, S365Y, -366E, N369-, S370-, T371-, -377S, -381L, -382A, -383S, T385S, P389Q, K416T, M447I, R462K, I463L; gp41: R46M, V72L, S107T, D109N, E110K, N113D, T268A, T306A, I309V, V318I, R324G, V326F, V329-, L330-; nef: S9K, I10M, V11G, P14S, I16V, T23A, H40Y, S46T, I101V, E108D, Q125D, I133V, E144K, E152K, D156A, M168I, C169N, M182I, N186D, R196Q, I197Q, K204N, D205K; p17: S9R, G11E, K18G, S54A, M61L, G62E, L75V, Y79F, T84V, Y86L, E90A, T109A, K113R, Q130K; p2: A7V, N9T, E10G, A12G, I13V; p24: Q4R, L6I, A14P, S33N, G116D, S120G, S225G; p6: E31Q, L35K, Y36H, N47S; p7: P9Q, I24L, K26R, R29K, K41R; pro: G17E, N37D, K70R; rev: S8C, E10G, E11A, K14Q, R17K, P31S, S54T, S67L, N86S, I102V, R103F; tat: R19E, V36H, I39V, Q54L, G57S, T58A, P59S, Q60P, P77L; vif: T20A, M29I, Y30H, V31I, Q36K, N48H, K67R, I109L, H127Q, T155A, P156Q; vpr: V37M, S41G, I60L, I61L, I63F, I70V; vpu: V5E, L7G, L33V, R47S, E58D, A63T, V65M, D78N"}}}]}]}, {"name": "D_NODE_0000034", "node_attrs": {"div": 0.08649, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T1986C", "C5867A", "-6984C", "-6985A", "-7000A", "C7102A", "G8304C"], "gp120": ["Q5N"]}, "labels": {"aa": "gp120: Q5N"}}, "children": [{"name": "D_NODE_0000035", "node_attrs": {"div": 0.08802, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G1452A", "G1458A", "C3589T", "A5336C", "G5699A", "-6179G", "-6180A", "-6221A", "-6223A", "A6731G", "G6743A", "G6936A", "-6963A", "-6968T", "-6970A", "-6973T", "-6974A", "-6977A", "-6978C", "-6990G", "T8932A", "A9117G"], "gp120": ["N293E", "D297N", "G361K", "E412A"], "gp41": ["N113D"], "nef": ["Q104K", "I197Q"], "tat": ["G62D"], "vpr": ["Q77H"], "vpu": ["R31K"]}, "labels": {"aa": "gp120: N293E, D297N, G361K, E412A; gp41: N113D; nef: Q104K, I197Q; tat: G62D; vpr: Q77H; vpu: R31K"}}, "children": [{"name": "D_NODE_0000036", "node_attrs": {"div": 0.09339, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T23C", "A32G", "G166A", "G677A", "A749G", "T1289A", "A1461G", "T1646C", "A1786G", "C1828T", "C1987T", "G2925A", "C3067T", "G3205A", "A3651G", "C4144T", "C4159T", "T4674C", "G4932A", "C5237T", "T5357G", "A5576T", "T5826C", "G5872T", "C5964T", "A6113G", "-6175T", "A6197-", "G6267A", "C6281A", "A6286G", "A6324G", "A6584G", "A6714G", "A6723T", "C6925T", "G6935A", "-6956A", "-6976A", "-6983G", "-7009A", "A7100C", "C7250A", "A7269G", "A7734G", "T7880A", "T8047C", "A8105G", "G8110A", "C8277G", "A8288G", "G8534A", "T8847A", "G8929A", "T9108C"], "INT": ["E256D"], "RT-p51": ["R277K"], "RT-p66": ["R277K"], "gp120": ["L6F", "A37V", "S87G", "T104-", "E105-", "N108-", "T110-", "N111-", "R138K", "Q143K", "I244V", "Q287R", "Y290F", 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"S92A", "G93E", "S99N", "I102V", "A108S"], "tat": ["R19K", "K29Q", "Q35L", "I39T", "T40K", "T58P", "P59L", "Q60K", "D62S", "I69V", "S74L"], "vif": ["E2A", "R19N", "P47L", "H73Q", "E78D", "S95I", "R132K", "I154T", "R167Q"], "vpr": ["T19A", "S28N", "V37M", "A59V", "I74S", "T89A"], "vpu": ["A8S", "V13I", "A15V", "L18I", "C30W", "R32K", "L33I", "R35K", "D44E", "A50E", "D78N"]}, "labels": {"aa": "INT: L50M, I84M, V112T, G163E, K173R, I203M, R284G; RT-p51: D123E, M178I, E207G, S251I, K275R, M357L, Y405H, A437V; RT-p66: D123E, M178I, E207G, S251I, K275R, M357L, Y405H, A437V, V466A, V467I, L491S, A508S, Q524E; gp120: A35E, I56M, D85K, K93R, L97F, -126I, N128W, E136A, K140E, K143T, H145D, K150D, Q155K, N159R, N160T, E183D, K204M, K212T, L231F, E247K, T250S, N251D, S263T, T265R, T269S, I279V, I281M, L289W, T292K, N304T, S306N, R307K, A308T, Q316H, G322I, D323G, K328T, T330N, I332T, K334Q, P335S, G351R, -366T, -368M, S370K, T371S, -372K, -373W, -374T, -375D, -376N, -377A, -381L, T385I, L388I, I396V, G401E, I411V, A412S, S418N, N420S, A432Q, N433T, N435K, N437S, R462K; gp41: A21T, L24I, T27S, L34M, S88A, N96T, D109P, D113K, N133S, K154S, T165S, K166R, L210I, P213S, I264L, G275R, A281T, I301V, S302N, D305N, Q323L, V326I, N331H, T334R; nef: A32T, R35Q, E38A, G83A, V114I, H116N, Y120F, E144K, K151R, T157N, Q170L, M182R, R184K, N186D, R196K, L198E; p1: H9N; p17: K12A, N26G, L46I, P48T, G49S, G62E, I68L, E90K, R91K, I104V, T119A, R123G; p2: A10I, A11N, A12T, -13A; p24: G116A, S120G, P123V; p6: S14I, E19-, I21Q, T22M, -23T, S25P, L35Q; p7: K11R, I12T, I24L, K41R; pro: L10V; rev: P28Y, P31L, S54Q, N82T, S92A, G93E, S99N, I102V, A108S; tat: R19K, K29Q, Q35L, I39T, T40K, T58P, P59L, Q60K, D62S, I69V, S74L; vif: E2A, R19N, P47L, H73Q, E78D, S95I, R132K, I154T, R167Q; vpr: T19A, S28N, V37M, A59V, I74S, T89A; vpu: A8S, V13I, A15V, L18I, C30W, R32K, L33I, R35K, D44E, A50E, D78N"}}}, {"name": "JX236670", "node_attrs": {"div": 0.12163, "accession": "JX236670", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 2007.0}, "Strain_name": {"value": "p191647"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G112A", "A157G", "A256-", "T300A", "C362A", "A370G", "A371T", "A398G", "G409A", "A435C", "A474G", "G534T", "G552A", "C558A", "A566C", "T593C", "C641T", "A660G", "A706C", "C707T", "G709A", "G770A", "G771A", "C772G", "T824C", "C978T", "A1002G", "C1060A", "G1192A", "A1367G", "C1403T", "C1447A", "A1448T", "A1449-", "A1450-", "T1451-", "A1452-", "C1453-", "A1454-", "C1456G", "T1457A", "C1459A", "T1460C", "A1463G", "A1486G", "T1511C", "A1567G", "C1650T", "G1725A", "G1794A", "G1840A", "A1857G", "A1908G", "C1960T", "G1968A", "C1996T", "C2003T", "T2080G", "G2140A", "A2164G", "A2210G", "C2263T", "T2302A", "C2420T", "T2458C", "T2479A", "T2499C", "A2602T", "A2641G", "A2693C", "T2735C", "T2806C", "C2909T", "C2953T", "A2959T", "C3002T", "A3099G", "A3107T", "T3118A", "A3134C", "T3165C", "C3207T", "C3223A", "T3230A", "T3358G", "T3368C", "A3421G", "G3685A", "C3773T", "A3808G", "A3880G", "C3908T", "A3937G", "C4123T", "C4146G", "C4180T", "T4234A", "A4338G", "A4417G", "C4428T", "A4475G", "C4534T", "A4543C", "A4564G", "C4569T", "G4689A", "A4694C", "G4695A", "G4696A", "A4697T", "A4769C", "T4805C", "G4835A", "C4871T", "T4943C", "A4987T", "T4988A", "A4993C", "A5007C", "C5034T", "A5036G", "G5082A", "C5091T", "C5102T", "G5122A", "T5206C", "A5213G", "C5242T", "T5251C", "A5302G", "G5433T", "T5472C", "C5478T", "G5482T", "T5484G", "G5561A", "A5601G", "C5614T", "T5686A", "A5698G", "A5699T", "G5856A", "A5867G", "G5869A", "A5955G", "T6154G", "T6155C", "C6160T", "C6165G", "A6168-", "A6169-", "T6170-", "G6171T", "G6172C", "A6174C", "-6181A", "A6185-", "T6187-", "A6188-", "C6189-", "C6190-", "A6191-", "T6193-", "-6220G", "A6221G", "-6222C", "-6224A", "-6225C", "-6227G", "-6228A", "-6229A", "A6234G", "G6263A", "G6277A", "A6278C", "G6284A", "T6301C", "A6330G", "A6335G", "T6361C", "C6364T", "A6376C", "A6442G", "A6449C", "A6500T", "A6525G", "G6553A", "A6596G", "T6598G", "A6669C", "A6695C", "T6720A", "A6732C", "A6734G", "T6735A", "A6781C", "A6789G", "A6790G", "A6811C", "T6827C", "A6836C", "A6837G", "C6938T", "A6950G", "C6951A", "-6957A", "-6958T", "-6969T", "-6971G", "-6972A", "-6975G", "-6979A", "-6980G", "-6981G", "-6982G", "C6984A", "A6989G", "T6991G", "-6993G", "-6994T", "A7000-", "A7001-", "T7003-", "-7008C", "C7094A", "T7144G", "C7174T", "T7180G", "C7201T", "A7210G", "A7241C", "C7313A", "G7339A", "G7399A", "G7440A", "C7486T", "G7495A", "A7575T", "C7603T", "A7629G", "G7668A", "T7675A", "T7681C", "A7720G", "A7721G", "G7745A", "C7754G", "A7765G", "G7846A", "G7915A", "G7918A", "A7936G", "A7989G", "T8007C", "T8008G", "C8028T", "G8050C", "T8155C", "T8164C", "G8173A", "T8181C", "T8197G", "T8203C", "T8218C", "A8264G", "G8267A", "C8296T", "A8388G", "T8414G", "A8438T", "T8440C", "A8459G", "T8495C", "A8567G", "G8595C", "A8653C", "G8654A", "A8657G", "C8812T", "G8814-", "A8815-", "A8816-", "A8844C", "A8859G", "G8861A", "A8931G", "A8947T", "T8972A", "C8975T", "T8976G"], "INT": ["A124G", "K188R", "T218I", "I234V", "A265V"], "RT-p51": ["T39A", "D121Y", "I135T", "E169D", "I200L", "F214L", "P272S", "D335G", "T338S", "K347Q", "M357T", "A371V", "C379S"], "RT-p66": ["T39A", "D121Y", "I135T", "E169D", "I200L", "F214L", "P272S", "D335G", "T338S", "K347Q", "M357T", "A371V", "C379S"], "gp120": ["S1N", "N5E", "K34R", "-116S", "-117V", "-118T", "-119N", "-120E", "-121T", "-122E", "-123A", "-124T", "-125E", "-126M", "K127R", "V137I", "K142Q", "V144M", "D157G", "N158D", "N159S", "T161A", "R164Y", "K199Q", "T216S", "K224R", "N248E", "Y272S", "I281L", "L289Y", "E293A", "I294E", "E309D", "K312R", "F325L", "K328R", "-366E", "-368G", "S370-", "T371-", "-381E", "-383G", "D384S", "L414I", "A432V", "N437Q", "I463L"], "gp41": ["L4M", "R46K", "H91L", "D109G", "R122K", "T140V", "E148K", "Q151E", "Q229R", "I235T", "S242L", "I293T", "N298K", "I321V", "V322I"], "nef": ["I16V", "V33A", "V85L", "K104P", "T157I", "E158-", "M168L", "M173V", "R196Q", "Q197E", "Y202F"], "p1": ["P7S"], "p17": ["S9R", "K12S", "G25E", "I34L", "N47D", "A67S", "E73K", "L75I", "T109A", "N124T", "S125N"], "p2": ["A7V", "T8-", "N9-", "A10-", "A11-", "A12-"], "p24": ["A14S", "I91V", "T110N", "R154K"], "p6": ["G16R", "A39T"], "p7": ["K7R", "K34R"], "pro": ["K20R", "N37S", "R57K", "L63P", "H69Y"], "rev": ["D11E", "V16I", "S30G", "S54A", "E68Q", "S103P", "S106P", "V109I", "*117E"], "tat": ["R19S", "Q76R"], "vif": ["A35T", "Q36H", "G37N", "E61D", "N134I", "Q136P", "K141Q", "V166I", "R179K"], "vpu": ["P3S", "F27I", "K31V"]}, "labels": {"aa": "INT: A124G, K188R, T218I, I234V, A265V; RT-p51: T39A, D121Y, I135T, E169D, I200L, F214L, P272S, D335G, T338S, K347Q, M357T, A371V, C379S; RT-p66: T39A, D121Y, I135T, E169D, I200L, F214L, P272S, D335G, T338S, K347Q, M357T, A371V, C379S; gp120: S1N, N5E, K34R, -116S, -117V, -118T, -119N, -120E, -121T, -122E, -123A, -124T, -125E, -126M, K127R, V137I, K142Q, V144M, D157G, N158D, N159S, T161A, R164Y, K199Q, T216S, K224R, N248E, Y272S, I281L, L289Y, E293A, I294E, E309D, K312R, F325L, K328R, -366E, -368G, S370-, T371-, -381E, -383G, D384S, L414I, A432V, N437Q, I463L; gp41: L4M, R46K, H91L, D109G, R122K, T140V, E148K, Q151E, Q229R, I235T, S242L, I293T, N298K, I321V, V322I; nef: I16V, V33A, V85L, K104P, T157I, E158-, M168L, M173V, R196Q, Q197E, Y202F; p1: P7S; p17: S9R, K12S, G25E, I34L, N47D, A67S, E73K, L75I, T109A, N124T, S125N; p2: A7V, T8-, N9-, A10-, A11-, A12-; p24: A14S, I91V, T110N, R154K; p6: G16R, A39T; p7: K7R, K34R; pro: K20R, N37S, R57K, L63P, H69Y; rev: D11E, V16I, S30G, S54A, E68Q, S103P, S106P, V109I, *117E; tat: R19S, Q76R; vif: A35T, Q36H, G37N, E61D, N134I, Q136P, K141Q, V166I, R179K; vpu: P3S, F27I, K31V"}}}]}, {"name": "D_NODE_0000037", "node_attrs": {"div": 0.09306, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A418G", "C471A", "A508G", "A774T", "T852A", "T1003A", "A1454T", "C1954T", "T2456G", "A2566G", "G2972A", "G3250A", "G3431T", "T3497A", "C3500A", "T3829C", "T4075C", "T4135C", "G4652T", "A5215G", "G5448A", "T5484G", "G5561A", "C5602T", "T5686A", "G5717A", "A5954G", "-6192A", "-6195C", "-6200A", "-6201A", "-6202T", "-6203G", "-6225G", "A6251G", "G6458A", "C6619T", "A6693G", "A6734G", "A6764G", "C6876T", "-6971A", "-6975A", "-6976T", "-6979A", "-6993C", "-6994A", "-6997G", "-6998G", "-7002A", "A7372G", "G7399A", "C7597T", "A7706C", "A7799C", "G8173A", "T8256C", "A8338G", "C8652A"], "RT-p51": ["V293I"], "RT-p66": ["V293I", "A446S", "S468T", "L469I"], "gp120": ["K34E", "-107K", "I133V", "D202N", "H280R", "P341L", "-372W"], "gp41": ["S74R", "I135L", "T140I", "K166Q", "V318A"], "nef": ["E64D"], "p17": ["K28R", "L46I", "K58R"], "p2": ["A12N"], "p24": ["I15L", "S41T"], "rev": ["V16I", "V109I"], "vif": ["K22N"], "vpr": ["V37M", "E48D"], "vpu": ["F27I", "R37K"]}, "labels": {"aa": "RT-p51: V293I; RT-p66: V293I, A446S, S468T, L469I; gp120: K34E, -107K, I133V, D202N, H280R, P341L, -372W; gp41: S74R, I135L, T140I, K166Q, V318A; nef: E64D; p17: K28R, L46I, K58R; p2: A12N; p24: I15L, S41T; rev: V16I, V109I; vif: K22N; vpr: V37M, E48D; vpu: F27I, R37K"}}, "children": [{"name": "AF484485", "node_attrs": {"div": 0.12951000000000001, "accession": "AF484485", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UGD23550"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G394A", "A411C", "C426T", "A431G", "A499G", "C503T", "G614A", "C623T", "G671A", "A673C", "C722T", "A735G", "A737G", "G738T", "G762A", "T763C", "C765T", "C897T", "G935T", "G944A", "A1002T", "A1017C", "A1070G", "C1178T", "C1211T", "G1232A", "T1271G", "A1278G", "A1279G", "T1280C", "G1313A", "A1337G", "C1354G", "T1362C", "C1444T", "C1453A", "G1455A", "T1481C", "G1495A", "T1501A", "A1528T", "G1532A", "G1562A", "C1571A", "C1598T", "A1660G", "G1661A", "G1725A", "T1741C", "A1765G", "A1770G", "T1790C", "A1832G", "T1854C", "T1895G", "A1906G", "A1908G", "A1933G", "G1942A", "T1978G", "A1982G", "C1996T", "A2059G", "T2116G", "A2170G", "C2195T", "A2215T", "T2302A", "C2356T", "T2386G", "G2422A", "T2449G", "T2479C", "T2521C", "A2592G", "G2629A", "G2656A", "A2699G", "G2704A", "A2715G", "T2770G", "A2818G", "A2828C", "A2842G", "A2871G", "G2881A", "A2971G", "A2983G", "A3001G", "A3027G", "A3076T", "C3100T", "G3142A", "A3199G", "A3251C", "G3398T", "A3400G", "A3454G", "A3676G", "G3680A", "C3688T", "G3707A", "G3715A", "C3751T", "C3778T", "T3779C", "G3806A", "A3825G", "T3853C", "G3859A", "G3884A", "C3940T", "T3967C", "A3973C", "G3997A", "T4024C", "G4081A", "C4204T", "G4352A", "A4475C", "G4549A", "C4576T", "A4650C", "C4721T", "C4724T", "A4728C", "C4754T", "C4761T", "C4803A", "A4820C", "T4832A", "C4871T", "T4928C", "A4937C", "C4975T", "T4985C", "A5039T", "A5049G", "A5058C", "C5160T", "G5176A", "G5187A", "A5248T", "T5281C", "C5303T", "A5312G", "C5314A", "C5336T", "T5356C", "G5382A", "A5396G", "C5397A", "G5463A", "C5514A", "G5546C", "A5548G", "C5551T", "C5559T", "A5564C", "G5565A", "A5612C", "C5614G", "G5652A", "A5685G", "G5702A", "A5710G", "G5712A", "A5720G", "C5727T", "A5733G", "C5769T", "G5781A", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5826C", "G5839C", "A5840C", "T5859C", "G5869T", "A5908G", "G5957A", "T6034G", "C6037A", "A6136G", "C6139T", "A6169G", "G6171A", "G6172T", "-6175T", "T6178A", "G6179A", "-6181T", "A6185G", "-6186A", "C6189A", "-6194G", "-6196C", "-6198C", "-6199T", "-6216T", "-6217C", "-6220C", "-6222C", "-6224G", "A6234G", "C6287T", "T6298C", "A6395T", "T6424C", "T6433G", "A6442G", "G6478A", "A6490C", "A6525G", "A6538G", "C6545T", "A6573G", "G6577A", "T6598A", "A6602G", "C6603A", "A6605G", "A6617G", "A6647G", "C6648T", "C6683A", "A6684G", "T6690C", "C6721A", "A6732G", "T6735A", "A6743C", "T6745A", "C6792T", "C6797G", "A6799C", "G6802A", "G6818A", "G6838A", "T6860C", "G6865A", "C6938T", "G6948A", "C6951G", "A6952T", "T6953G", "G6954T", "G6955A", "-6956T", "A6959-", "A6960-", "T6961-", "A6962-", "A6963G", "T6964G", "-6969C", "-6972A", "-6980G", "-6981G", "-6982G", "-6983T", "-6995A", "-6996A", "-6999C", "A7007-", "A7021G", "T7095A", "A7101G", "T7105C", "A7108G", "C7124T", "G7197A", "A7241C", "A7398T", "C7498T", "C7525G", "A7572G", "A7590C", "T7622A", "T7626A", "G7628A", "G7668A", "A7669G", "T7691G", "A7710G", "G7726A", "G7745A", "A7763G", "A7790G", "G7791A", "G7831A", "G7835A", "T7853C", "G7862A", "C7930T", "C7931A", "G7942A", "A7943G", "T7968C", "A7977G", "A8029C", "T8047C", "C8149T", "T8164C", "T8176C", "A8180C", "T8215C", "G8216A", "C8232T", "G8242A", "G8243T", "A8264G", "A8275G", "T8280C", "A8294C", "C8304G", "A8311T", "G8323A", "T8375G", "A8388G", "A8455G", "C8480T", "G8492T", "C8504T", "G8506T", "T8507G", "G8512A", "G8513T", "T8543C", "A8567G", "C8601T", "A8643G", "G8682A", "A8793G", "G8805A", "G8852A", "G8882C", "T8887G", "A8909G", "C8928A", "G8929A", "A8931C", "T8971C", "T9074C", "C9078T"], "INT": ["E11K", "N17S", "V37I", "G193R", "I234L"], "RT-p51": ["E40D", "K166R", "M178I", "I202V", "E207G", "K245Q", "K259R", "K311R", "T386P", "V435L"], "RT-p66": ["E40D", "K166R", "M178I", "I202V", "E207G", "K245Q", "K259R", "K311R", "T386P", "V435L", "S519N", "E529K", "A538T"], "gp120": ["V2A", "A35T", "N60K", "-106Y", "-109A", "N111D", "-112N", "-113N", "-114A", "-115T", "-116N", "-117V", "-118D", "-119T", "-120G", "-121M", "-122R", "K127-", "H145Y", "N158D", "T181S", "K212N", "K224R", "E240G", "N248K", "T250E", "N251D", "I255V", "T265V", "Q277R", "I279T", "E293G", "I294E", "N297Q", "N304D", "T313I", "Q315D", "G322R", "S336P", "K361E", "S365-", "W367-", "T371V", "-373T", "-377S", "-381G", "-382M", "-383S", "D384N", "T385S", "L414Q", "K416R", "N437Q", "R448K", "I463L"], "gp41": ["Q32L", "K90R", "N96T", "S107T", "L108Q", "D109K", "R122K", "L130V", "E136G", "E148K", "K154E", "S163D", "M176I", "V178I", "V187I", "L210I", "R214G", "I222T", "E225G", "I293L", "D305N", "A310V", "G314W", "I321V", "V326A", "N331H", "T334R"], "nef": ["I16V", "E38G", "Q50H", "C55L", "W57Y", "I101V", "V114I", "K151E", "E155K", "M182R", "R196K"], "p1": ["K10R"], "p17": ["R20Q", "N26H", "E55G", "K113T"], "p2": ["A7V", "A10N", "A11T"], "p24": ["I2V", "V3L", "V11T", "H12Y", "M68I", "I91Y", "M96L", "D180E", "N183G", "A208G"], "p6": ["G16R", "I21T", "E29G", "K31E"], "p7": ["R10K", "I12N", "E21V"], "pro": ["T12A", "L19P", "L33V", "I36M", "N37S", "D60E", "I62V", "L63P"], "rev": ["D11Q", "A15V", "R17Q", "P28Y", "E32R", "S61R", "S67P", "Q101*", "S106P", "D111A"], "tat": ["N7R", "R57T", "T58A", "P59S", "Q63P", "S74L", "R78Q", "*87Q"], "vif": ["N22H", "N48H", "H73N", "E78D", "E117D", "T130I", "T155A", "K158Q", "H192Y"], "vpr": ["T19I", "S28N", "I70V", "A93T"], "vpu": ["Q2P", "P3A", "R32K", "R35G", "K38R", "-69V", "-70E", "-71M", "-72G", "D78P"]}, "labels": {"aa": "INT: E11K, N17S, V37I, G193R, I234L; RT-p51: E40D, K166R, M178I, I202V, E207G, K245Q, K259R, K311R, T386P, V435L; RT-p66: E40D, K166R, M178I, I202V, E207G, K245Q, K259R, K311R, T386P, V435L, S519N, E529K, A538T; gp120: V2A, A35T, N60K, -106Y, -109A, N111D, -112N, -113N, -114A, -115T, -116N, -117V, -118D, -119T, -120G, -121M, -122R, K127-, H145Y, N158D, T181S, K212N, K224R, E240G, N248K, T250E, N251D, I255V, T265V, Q277R, I279T, E293G, I294E, N297Q, N304D, T313I, Q315D, G322R, S336P, K361E, S365-, W367-, T371V, -373T, -377S, -381G, -382M, -383S, D384N, T385S, L414Q, K416R, N437Q, R448K, I463L; gp41: Q32L, K90R, N96T, S107T, L108Q, D109K, R122K, L130V, E136G, E148K, K154E, S163D, M176I, V178I, V187I, L210I, R214G, I222T, E225G, I293L, D305N, A310V, G314W, I321V, V326A, N331H, T334R; nef: I16V, E38G, Q50H, C55L, W57Y, I101V, V114I, K151E, E155K, M182R, R196K; p1: K10R; p17: R20Q, N26H, E55G, K113T; p2: A7V, A10N, A11T; p24: I2V, V3L, V11T, H12Y, M68I, I91Y, M96L, D180E, N183G, A208G; p6: G16R, I21T, E29G, K31E; p7: R10K, I12N, E21V; pro: T12A, L19P, L33V, I36M, N37S, D60E, I62V, L63P; rev: D11Q, A15V, R17Q, P28Y, E32R, S61R, S67P, Q101*, S106P, D111A; tat: N7R, R57T, T58A, P59S, Q63P, S74L, R78Q, *87Q; vif: N22H, N48H, H73N, E78D, E117D, T130I, T155A, K158Q, H192Y; vpr: T19I, S28N, I70V, A93T; vpu: Q2P, P3A, R32K, R35G, K38R, -69V, -70E, -71M, -72G, D78P"}}}, {"name": "AF457090", "node_attrs": {"div": 0.1271, "accession": "AF457090", "clade_membership": {"value": "D"}, "country": {"value": "KE"}, "date": {"value": 2001.0}, "Strain_name": {"value": "NKU3006"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "G409T", "A425G", "C482T", "T495C", "A516C", "G520A", "A556G", "C558A", "G603A", "A605G", "G608A", "A612C", "G677A", "G687A", "G703A", "A706G", "T728C", "T788C", "C875T", "G987A", "G989A", "G1078C", "C1118T", "G1192A", "A1226G", "T1289C", "G1346A", "A1367G", "G1388A", "G1397A", "A1480G", "T1481G", "C1491A", "T1511C", "A1567G", "C1613T", "A1670G", "G1687A", "T1754C", "C1782A", "T1792C", "C1807T", "C1828T", "A1857G", "A1907G", "A1927G", "C1986T", "C1987A", "A1993C", "A2007G", "A2032G", "C2149T", "G2224A", "A2230G", "G2241A", "A2473G", "T2499C", "C2503T", "A2627G", "A2693G", "T2694C", "T2737C", "G2902A", "A2977C", "G2984A", "G3094A", "A3097G", "A3164T", "A3173G", "G3280A", "T3310C", "T3364C", "A3367G", "G3385A", "G3398A", "G3442A", "G3487A", "C3508T", "T3567C", "A3607G", "C3610T", "A3651G", "A3658C", "A3675C", "G3685A", "A3706C", "A3766G", "A3802G", "A3816G", "C3820T", "C3823T", "A3862C", "T3976C", "C4021T", "A4087G", "A4093G", "C4180T", "G4267A", "C4426T", "C4428T", "C4534T", "T4640C", "C4665T", "C4692T", "A4694T", "C4715T", "C4721A", "A4956T", "T5019C", "C5050A", "A5059G", "G5093A", "A5150G", "A5154C", "A5248C", "A5282C", "A5324G", "A5335T", "A5345G", "C5351A", "A5373G", "C5397T", "G5403A", "A5411G", "C5412G", "T5451C", "C5479T", "A5481C", "G5496A", "G5538A", "A5548T", "A5556G", "C5614T", "T5621C", "G5622A", "C5639G", "G5644A", "A5665G", "C5688A", "T5704G", "A5707C", "A5715G", "A5718G", "T5728A", "G5781C", "A5784G", "G5805A", "G5856A", "A6015G", "A6061G", "C6067T", "G6086A", "C6163T", "A6169T", "T6170G", "G6171T", "-6175G", "-6181A", "-6186T", "T6187C", "A6188T", "C6189T", "T6193A", "-6194A", "-6196T", "A6197T", "-6198T", "-6199C", "-6204A", "-6205G", "-6206A", "-6207C", "-6208C", "-6209A", "-6210T", "-6211G", "-6212A", "-6213A", "-6214A", "-6215A", "-6216A", "-6217T", "-6220G", "-6222A", "-6224T", "-6227G", "-6228A", "-6229A", "A6234C", "C6247T", "A6249G", "T6250G", "G6263T", "A6275G", "A6286G", "A6303G", "C6317A", "T6321C", "A6327G", "T6328G", "A6329G", "A6330G", "C6336A", "C6369T", "G6382A", "G6392A", "T6421C", "T6457C", "A6465C", "T6548C", "C6563T", "T6579C", "C6601T", "T6618C", "A6622C", "T6637C", "C6658T", "A6669C", "A6679C", "A6685G", "A6718C", "A6753T", "C6758T", "A6759T", "C6766G", "G6771A", "A6773G", "G6776A", "A6781G", "G6821A", "T6829C", "-6830C", "-6831C", "-6832C", "A6836-", "A6837-", "G6838-", "C6840A", "A6847C", "G6905A", "G6910A", "G6935C", "A6952G", "-6956G", "-6957A", "-6958T", "C6966A", "A6967G", "-6969G", "A6970G", "-6972G", "A6974G", "-6983A", "-6995G", "-6996G", "-6999G", "-7004G", "-7005C", "-7006G", "-7008A", "-7009A", "C7014T", "G7056A", "G7088A", "C7089G", "C7094G", "T7095C", "A7096C", "A7102C", "C7107T", "A7115G", "T7144A", "T7147G", "A7152T", "T7153C", "C7160A", "A7161C", "G7162T", "A7177G", "A7189G", "A7216G", "G7239A", "A7240G", "T7243C", "A7268G", "A7322T", "G7333A", "C7373A", "T7400G", "G7440A", "C7463A", "G7508A", "C7525A", "T7579C", "T7604G", "A7629G", "G7631T", "G7633T", "T7642G", "A7672G", "T7690G", "A7750T", "C7874T", "C8026A", "C8065T", "A8152G", "T8155C", "C8156T", "T8213C", "A8219G", "G8231A", "A8241G", "C8277T", "A8335G", "A8342G", "G8373A", "C8410T", "A8458G", "A8469G", "T8495C", "T8498C", "C8499G", "A8522G", "A8525G", "A8528G", "G8561A", "G8595C", "C8688A", "A8726C", "C8756A", "T8789G", "C8790A", "C8791T", "G8808A", "C8810T", "A8912C", "A8932C", "C8934A", "T8974-", "A9016C", "C9028A", "T9029C", "G9030T", "-9033G"], "INT": ["K14R", "T218I"], "RT-p51": ["R49K", "I135T", "M178V", "I200A", "E297K", "M357L", "T360A", "V435I"], "RT-p66": ["R49K", "I135T", "M178V", "I200A", "E297K", "M357L", "T360A", "V435I", "L491S", "K527T"], "gp120": ["S1N", "N5K", "Q54R", "E78K", "E105D", "-106V", "-109E", "-112E", "-113T", "-114M", "-119M", "-120K", "-121N", "-122L", "-126I", "N132R", "V137L", "K141E", "K150R", "Q155K", "I156T", "N158G", "N159G", "T161N", "A172V", "V180I", "K204T", "I242T", "I255T", "Y272S", "L289F", "I294V", "Q300L", "H302F", "N304E", "S306N", "R307G", "A308T", "D323N", "-326P", "K328-", "T329K", "G351R", "K361Q", "-366T", "-368D", "S370N", "T371K", "-373S", "N378-", "N379-", "T380-", "T387I", "G401E", "A412R", "L414A", "K416N", "S418L", "I421V", "A432N", "N433I", "N435S", "S436T", "R462K", "K472E"], "gp41": ["M7L", "L24M", "L33V", "R46K", "L54M", "V69I", "S101A", "D109G", "E110Y", "D113E", "L191F", "F241L", "F304L", "T306A", "A310T", "E313G", "A325V"], "nef": ["V11I", "T23I", "K39R", "I43V", "P53A", "V85L", "H116N", "D149E", "P150I", "D156N", "Q197T", "L198M"], "p17": ["G25V", "S54P", "M61L", "G62E", "E74G", "L75I", "E90K", "K93Q", "A118T", "R123K", "N124S"], "p2": ["A10T"], "p24": ["V86I", "I91N", "G116A", "R154K"], "p6": ["S3N", "L35M", "L38S", "S43L", "S50L"], "p7": ["N5R", "P9T", "K34R"], "pro": ["K20R", "N37D", "E65D", "K70R"], "rev": ["S8N", "K14R", "L60I", "L73F", "I102V", "S103L"], "tat": ["N12R", "Q35Y", "T58S"], "vif": ["H27Y", "Q36Y", "D45E", "I124L", "T155K", "K158R", "N190H"], "vpr": ["N16D", "E17A", "I60L", "H77L", "T84I", "R90G"], "vpu": ["P3S", "V5A", "A11G", "V13I", "I20V", "L33V", "K34Q", "W41R", "E58D"]}, "labels": {"aa": "INT: K14R, T218I; RT-p51: R49K, I135T, M178V, I200A, E297K, M357L, T360A, V435I; RT-p66: R49K, I135T, M178V, I200A, E297K, M357L, T360A, V435I, L491S, K527T; gp120: S1N, N5K, Q54R, E78K, E105D, -106V, -109E, -112E, -113T, -114M, -119M, -120K, -121N, -122L, -126I, N132R, V137L, K141E, K150R, Q155K, I156T, N158G, N159G, T161N, A172V, V180I, K204T, I242T, I255T, Y272S, L289F, I294V, Q300L, H302F, N304E, S306N, R307G, A308T, D323N, -326P, K328-, T329K, G351R, K361Q, -366T, -368D, S370N, T371K, -373S, N378-, N379-, T380-, T387I, G401E, A412R, L414A, K416N, S418L, I421V, A432N, N433I, N435S, S436T, R462K, K472E; gp41: M7L, L24M, L33V, R46K, L54M, V69I, S101A, D109G, E110Y, D113E, L191F, F241L, F304L, T306A, A310T, E313G, A325V; nef: V11I, T23I, K39R, I43V, P53A, V85L, H116N, D149E, P150I, D156N, Q197T, L198M; p17: G25V, S54P, M61L, G62E, E74G, L75I, E90K, K93Q, A118T, R123K, N124S; p2: A10T; p24: V86I, I91N, G116A, R154K; p6: S3N, L35M, L38S, S43L, S50L; p7: N5R, P9T, K34R; pro: K20R, N37D, E65D, K70R; rev: S8N, K14R, L60I, L73F, I102V, S103L; tat: N12R, Q35Y, T58S; vif: H27Y, Q36Y, D45E, I124L, T155K, K158R, N190H; vpr: N16D, E17A, I60L, H77L, T84I, R90G; vpu: P3S, V5A, A11G, V13I, I20V, L33V, K34Q, W41R, E58D"}}}]}]}, {"name": "D_NODE_0000038", "node_attrs": {"div": 0.08732999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A1906G", "C5466T", "A5548C", "A6169T", "-6192A", "-6215A", "A6226-", "C6336-", "C6337-", "T8213C", "T8440C", "A8844G"], "gp120": ["-112T", "Y272N", "E309K", "N379-"], "nef": ["V33A"], "pro": ["I36M"], "tat": ["T58P"]}, "labels": {"aa": "gp120: -112T, Y272N, E309K, N379-; nef: V33A; pro: I36M; tat: T58P"}}, "children": [{"name": "D_NODE_0000039", "node_attrs": {"div": 0.08925, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A2829C", "G5382T", "A5491G", "-6206A", "-6210T", "-6337T", "A6732C", "-6956A", "-6963G", "-6968T", "-6971A", "-6974A", "-6975A", "-6976T", "-6980A", "-7008C", "-7009A", "A7533G", "G7630T", "G8590C", "G8861A"], "RT-p51": ["K245T"], "RT-p66": ["K245T"], "gp120": ["A35E", "-113T", "D323G", "A432N", "S436Q", "N437S"], "gp41": ["K77R", "N113G", "F304L"], "nef": ["G83A", "M173I"], "p7": ["K26R"], "tat": ["E2D", "I39V"], "vpr": ["A93S"]}, "labels": {"aa": "RT-p51: K245T; RT-p66: K245T; gp120: A35E, -113T, D323G, A432N, S436Q, N437S; gp41: K77R, N113G, F304L; nef: G83A, M173I; p7: K26R; tat: E2D, I39V; vpr: A93S"}}, "children": [{"name": "D_NODE_0000040", "node_attrs": {"div": 0.09253, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A424G", "T476C", "G740A", "C794T", "T1271G", "T1344C", "A1446T", "G1495A", "A1543G", "T2456G", "A3259G", "A3825G", "C4076A", "G4982T", "A5282C", "A5355G", "T5483A", "G5565A", "G5712A", "T5826C", "A5867C", "-6180C", "-6186A", "-6199T", "-6208T", "C6287T", "-6970A", "-6972A", "-6973T", "-6979A", "-6982G", "-6983G", "C6984T", "A7065G", "A7151G", "A7155C", "G7918A", "A7977G", "A8455G", "G8534A", "A8537G", "C8609T", "C8868T"], "INT": ["N17S", "L101I"], "gp120": ["-106W", "-109T", "-114G", "H145Y", "K404R"], "gp41": ["E225G"], "nef": ["E38G"], "p17": ["K30R"], "p24": ["D180E"], "p7": ["R10K"], "vif": ["E61D", "R132S"], "vpr": ["I60L"]}, "labels": {"aa": "INT: N17S, L101I; gp120: -106W, -109T, -114G, H145Y, K404R; gp41: E225G; nef: E38G; p17: K30R; p24: D180E; p7: R10K; vif: E61D, R132S; vpr: I60L"}}, "children": [{"name": "AY304496", "node_attrs": {"div": 0.12875, "accession": "AY304496", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UGA08483"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A398G", "A411C", "A418G", "G520A", "C540A", "G629A", "T635C", "A660G", "C661T", "T668C", "G677A", "A699G", "A701G", "G703A", "T789C", "G815A", "C845T", "A914C", "G989A", "A1007G", "G1090A", "T1166C", "A1208G", "G1313A", "G1397A", "G1424A", "T1451G", "G1452T", "T1460C", "G1532A", "A1541G", "C1550T", "G1562A", "A1592G", "C1688A", "A1770G", "G1794A", "T1797G", "G1852T", "A1908G", "C1986T", "C1987T", "C2083T", "A2170G", "T2171C", "A2179G", "C2296T", "T2338C", "A2407G", "T2440C", "T2449C", "A2463G", "A2498G", "A2602C", "C2644T", "T2679G", "G2682A", "G2704A", "A2715G", "A2842G", "C2857A", "T2885C", "G2925A", "A2926G", "C2942A", "G2948A", "A2950G", "C2978T", "A2986G", "C3002T", "G3046A", "C3075T", "C3100T", "T3131C", "T3184C", "G3205A", "A3247G", "T3433C", "G3467A", "T3497C", "C3500A", "A3574G", "G3715A", "T3742C", "A3808G", "A3835G", "T3865G", "T3889C", "C3940T", "A4036G", "A4066T", "G4109A", "T4117C", "G4156A", "A4178G", "T4234C", "T4276C", "T4316C", "A4455T", "G4495A", "C4501T", "A4543C", "C4569T", "A4684G", "A4687G", "A4769T", "T4943C", "T5003C", "A5055C", "C5102T", "A5134G", "G5140A", "A5159G", "G5167T", "T5182C", "G5212A", "A5213G", "T5214C", "T5292C", "A5312G", "T5356C", "G5359T", "T5382C", "T5391C", "G5448A", "T5451C", "C5478T", "G5482A", "A5533G", "G5557A", "T5621A", "T5627C", "C5659T", "T5695G", "G5699A", "G5702A", "T5704A", "T5705A", "A5707T", "A5708T", "T5739G", "A5746G", "G5747C", "A5751G", "A5752G", "G5845A", "T5850C", "C5878T", "A5879G", "G5902A", "A5915T", "T5948G", "C5958A", "T5971C", "A6023G", "C6097T", "C6115T", "A6130G", "A6164G", "T6169G", "-6175G", "A6177C", "-6179G", "-6181C", "T6187A", "C6190A", "-6194A", "-6195C", "-6196C", "-6198C", "-6200G", "-6201G", "-6202T", "-6203T", "-6204G", "-6205G", "-6207A", "-6209G", "-6211G", "-6212G", "-6213G", "-6214A", "-6216T", "-6217G", "G6218-", "A6219-", "A6230-", "T6231-", "G6232-", "A6251G", "A6304C", "A6322G", "G6323A", "-6336A", "A6346G", "A6353C", "G6382A", "C6412T", "A6442G", "C6477T", "C6487T", "A6490C", "G6503A", "T6548C", "C6559T", "A6571G", "G6577T", "A6583T", "C6619T", "A6647G", "C6648A", "G6681T", "T6688-", "A6689-", "T6690-", "A6691-", "C6692-", "A6693-", "A6695G", "-6697A", "-6698C", "-6699A", "-6700G", "-6701A", "-6702T", "A6703G", "A6714G", "T6720G", "C6721G", "C6729T", "T6772C", "A6773G", "G6779A", "A6790T", "A6822G", "T6829C", "C6835T", "T6914C", "A6947G", "A6950G", "C6951T", "-6957A", "-6958G", "G6963A", "-6969C", "A6971G", "-6977G", "-6978A", "-6981C", "A6989-", "T6991-", "A6992-", "-6998G", "-6999G", "-7002G", "-7004G", "-7005A", "-7006G", "C7012A", "C7016A", "T7047C", "G7054A", "G7088A", "C7089G", "A7100C", "A7101G", "T7114C", "G7132A", "A7152G", "A7154G", "T7165G", "T7180C", "G7239A", "C7250T", "A7269G", "A7273T", "G7276A", "G7315A", "G7343A", "C7368T", "T7400G", "T7403C", "A7420G", "T7444C", "G7631C", "A7641G", "G7657A", "G7668A", "C7678T", "T7690C", "A7701G", "A7706C", "A7721G", "A7741G", "A7782G", "A7790T", "G7791C", "A7801C", "A7818G", "A7820C", "G7846A", "T7852G", "T7880A", "G7883A", "A7891G", "G7942A", "A7943C", "C7954G", "A7955C", "G7956A", "C8004T", "T8016A", "G8030A", "A8093C", "G8110A", "A8111C", "C8120T", "C8146T", "A8147C", "T8155C", "A8180C", "T8200C", "T8203C", "C8221A", "G8231A", "G8245A", "G8255A", "A8263G", "G8279A", "T8280C", "A8363G", "A8409G", "C8419T", "A8438C", "A8458G", "C8480T", "G8492T", "T8495C", "C8510T", "A8522G", "A8536G", "T8543A", "A8567C", "A8653C", "C8669T", "T8678C", "A8701T", "A8739G", "G8753A", "C8771T", "T8789G", "C8790A", "A8804G", "G8805-", "A8806-", "G8807-", "G8808-", "A8809-", "C8810-", "A8811-", "C8812-", "T8813-", "G8814-", "A8815-", "A8816-", "T8883C", "A8885G", "T8903C", "C8921T", "G8933A", "G8945A", "T8971C", "T8972A", "A9015G", "A9018G"], "INT": ["V112I", "I135V", "F181L", "Y227F", "E256D", "A265V"], "RT-p51": ["D123G", "I135V", "E169D", "I195R", "G196E", "E207G", "R277K", "L283I", "G285R", "A327V", "Y346H"], "RT-p66": ["D123G", "I135V", "E169D", "I195R", "G196E", "E207G", "R277K", "L283I", "G285R", "A327V", "Y346H", "V458I", "S468P", "L469I", "S519N"], "gp120": ["G4C", "N5S", "T9A", "T21S", "S32A", "K57E", "T104A", "-107K", "N108E", "-115W", "-116N", "-117V", "-118G", "-119M", "I133V", "K150N", "I156M", "D157N", "N158D", "T161N", "N167H", "T208M", "K212N", "V217I", "E241D", "T265E", "N272Y", "R276I", "I279V", "H280-", "I281-", "-282Q", "-283M", "Q287R", "L289W", "T292S", "N293G", "R307G", "K312N", "F354L", "S365G", "-366V", "-368K", "S370N", "-372S", "-373D", "-374N", "-375E", "-376T", "-377V", "T380-", "-382G", "-383S", "D384E", "L388I", "M398T", "E412R", "K416R", "N433G", "N434A", "N435S", "S437K", "R462K", "K472R"], "gp41": ["A14T", "A22V", "L33V", "E110Q", "M118I", "R122K", "N133S", "I135L", "T140V", "N160S", "K166N", "K172R", "I173L", "L193I", "V194I", "D217E", "R218Q", "S234F", "V238E", "A243T", "I264L", "I270L", "L273F", "I282L", "I293L", "A310T", "V318I", "V326T"], "nef": ["T23A", "A26V", "K39R", "Q50H", "E65G", "Q104P", "Y120F", "I133V", "D149E", "P150T", "E155-", "D156-", "T157-", "E158-", "M168V", "P176S"], "p17": ["N26H", "K28R", "G62E", "Q69K", "T109V", "T122A", "R123K"], "p24": ["S120N"], "p6": ["S3R", "A39T", "S40A"], "pro": ["Q18H", "N37S"], "rev": ["R17K", "E32T", "Q36A", "S61N", "N82T", "D88T", "T91I", "H100S", "S103P", "D111A"], "tat": ["V36N", "R53G", "G61S", "R78H", "T82S", "G83S"], "vif": ["K33R", "K34R", "K157Q", "H183R", "G185E"], "vpr": ["T19A", "E21D", "V37A", "I63T", "I70V", "T84A", "R85L", "S93P", "S96P"], "vpu": ["V5E", "L7S", "C30G", "R31K", "R32K", "L33K", "K34L", "D44E", "R47A", "R49G", "D80N"]}, "labels": {"aa": "INT: V112I, I135V, F181L, Y227F, E256D, A265V; RT-p51: D123G, I135V, E169D, I195R, G196E, E207G, R277K, L283I, G285R, A327V, Y346H; RT-p66: D123G, I135V, E169D, I195R, G196E, E207G, R277K, L283I, G285R, A327V, Y346H, V458I, S468P, L469I, S519N; gp120: G4C, N5S, T9A, T21S, S32A, K57E, T104A, -107K, N108E, -115W, -116N, -117V, -118G, -119M, I133V, K150N, I156M, D157N, N158D, T161N, N167H, T208M, K212N, V217I, E241D, T265E, N272Y, R276I, I279V, H280-, I281-, -282Q, -283M, Q287R, L289W, T292S, N293G, R307G, K312N, F354L, S365G, -366V, -368K, S370N, -372S, -373D, -374N, -375E, -376T, -377V, T380-, -382G, -383S, D384E, L388I, M398T, E412R, K416R, N433G, N434A, N435S, S437K, R462K, K472R; gp41: A14T, A22V, L33V, E110Q, M118I, R122K, N133S, I135L, T140V, N160S, K166N, K172R, I173L, L193I, V194I, D217E, R218Q, S234F, V238E, A243T, I264L, I270L, L273F, I282L, I293L, A310T, V318I, V326T; nef: T23A, A26V, K39R, Q50H, E65G, Q104P, Y120F, I133V, D149E, P150T, E155-, D156-, T157-, E158-, M168V, P176S; p17: N26H, K28R, G62E, Q69K, T109V, T122A, R123K; p24: S120N; p6: S3R, A39T, S40A; pro: Q18H, N37S; rev: R17K, E32T, Q36A, S61N, N82T, D88T, T91I, H100S, S103P, D111A; tat: V36N, R53G, G61S, R78H, T82S, G83S; vif: K33R, K34R, K157Q, H183R, G185E; vpr: T19A, E21D, V37A, I63T, I70V, T84A, R85L, S93P, S96P; vpu: V5E, L7S, C30G, R31K, R32K, L33K, K34L, D44E, R47A, R49G, D80N"}}}, {"name": "AF484505", "node_attrs": {"div": 0.13349, "accession": "AF484505", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1998.0}, "Strain_name": {"value": "98UG57131"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T357A", "A369G", "A458G", "A512G", "A516T", "G518A", "G520C", "A530G", "A537C", "A541T", "C558G", "A604C", "G618T", "G644A", "G650A", "A656G", "C661A", "G667T", "A690G", "C710T", "A742G", "C747A", "A749G", "C767T", "T782A", "G818A", "G821A", "T824C", "A833G", "A920G", "A941G", "A959G", "G976T", "A1059T", "A1073G", "G1077A", "G1078A", "A1079C", "A1089G", "C1118T", "A1145G", "C1211T", "T1263A", "C1492A", "A1498G", "T1501C", "A1503G", "T1511C", "A1546G", "T1556C", "A1588G", "C1598T", "A1644G", "A1664G", "G1673A", "C1676T", "G1687A", "A1691G", "C1692A", "C1706T", "-1746T", "-1747C", "-1748C", "C1749T", "T1752-", "C1753-", "T1754-", "A1776C", "G1781A", "C1782T", "G1858A", "A1867G", "A1903C", "A1926G", "G1988A", "C1996T", "C2003T", "G2027A", "A2119G", "A2194G", "G2241A", "A2340G", "G2341A", "C2393T", "C2452T", "G2459A", "A2461G", "T2467C", "T2479A", "C2584T", "G2705A", "A2743G", "C2749T", "A2752G", "A2764G", "T2770C", "A2818G", "A2839C", "A2845C", "G2878A", "G2881A", "A2919G", "A2929C", "A2983G", "A2989G", "G3004A", "T3049C", "T3052C", "A3163G", "A3173G", "G3238A", "T3262C", "T3349C", "C3376T", "T3399C", "A3403G", "T3433A", "T3469C", "A3529G", "T3550A", "A3619C", "A3622G", "A3651G", "A3684G", "A3694C", "A3805G", "A3808C", "T3853C", "G3884A", "T3976C", "C4015T", "T4075C", "G4112A", "G4145A", "T4147C", "G4148A", "A4219G", "A4243G", "A4273G", "A4512G", "A4552G", "A4643C", "A4661G", "G4677A", "A4686C", "C4692A", "C4730T", "A4766G", "A4769C", "G4779A", "A4820C", "C4871T", "T4912C", "A4937C", "A5033T", "A5049G", "C5050A", "C5203T", "A5215G", "A5225G", "A5267G", "A5272T", "A5299G", "G5359C", "A5370T", "A5385C", "G5432A", "G5433T", "T5472C", "G5482T", "G5543A", "C5548A", "C5554G", "A5564C", "C5569T", "T5626G", "T5627G", "G5652A", "C5659A", "A5708G", "T5788C", "A5790C", "G5805A", "T5871G", "A5947G", "A5955G", "A5956T", "G5957A", "A5995G", "C6010T", "A6016C", "C6026T", "A6066C", "G6073A", "T6085C", "T6100C", "A6132G", "T6154C", "C6165A", "T6169A", "-6175C", "-6179A", "-6181T", "C6183A", "-6194G", "-6195G", "-6196T", "-6198G", "-6200A", "-6201C", "-6202C", "-6203C", "-6204C", "-6205T", "-6207C", "-6209A", "-6211C", "-6212T", "-6213C", "-6214T", "-6216C", "-6217T", "G6218A", "-6220A", "-6221G", "-6222A", "-6223C", "-6224A", "-6225T", "-6226A", "-6227G", "-6228G", "-6229A", "A6234C", "C6241T", "G6263T", "G6267A", "T6285C", "G6313A", "A6318C", "G6326A", "T6328G", "A6329G", "A6333G", "-6336C", "G6392A", "C6396A", "G6403A", "C6427T", "A6450G", "T6457C", "G6458A", "T6493C", "A6525G", "A6574C", "C6599A", "C6603A", "A6604G", "A6605G", "T6607G", "G6611A", "T6613A", "C6648T", "G6664A", "A6669C", "C6683A", "A6685G", "T6690C", "T6719C", "A6723T", "T6735A", "A6754G", "C6797G", "G6821A", "C6843A", "A6844G", "A6855G", "A6856C", "G6871A", "G6948A", "C6951G", "A6952T", "-6957T", "-6958A", "A6959G", "A6962G", "C6966A", "-6969T", "A6975G", "-6977A", "-6978C", "A6980G", "-6981G", "A6989G", "-6990A", "T6991C", "-6993G", "-6994T", "A7000-", "A7001-", "T7003-", "C7020A", "C7045T", "G7055A", "A7057C", "C7078T", "T7095C", "A7096G", "A7102C", "T7159A", "A7161T", "A7164G", "T7217C", "C7250A", "G7270A", "G7288A", "A7322G", "C7373G", "A7382T", "G7384A", "G7395A", "T7403A", "A7427T", "T7488A", "A7553C", "T7555G", "C7574A", "A7575C", "T7579A", "C7584G", "A7627C", "G7628A", "A7629C", "T7642G", "G7676A", "C7699T", "A7701C", "T7708C", "T7722A", "A7731G", "A7734G", "G7735A", "C7754A", "A7764C", "T7775C", "T7784G", "A7796T", "A7858G", "G8001A", "A8002C", "C8048T", "C8065T", "C8080A", "C8103T", "A8104G", "A8143G", "T8176C", "T8182C", "C8223T", "T8256C", "G8276A", "C8286G", "T8287G", "A8297G", "A8308G", "A8314G", "A8354G", "T8414G", "A8438T", "C8440T", "G8446A", "G8447A", "G8465-", "T8495A", "G8540A", "A8573G", "A8643G", "G8666T", "T8677C", "A8717C", "G8798A", "T8800C", "G8808A", "A8827G", "T8832C", "T8845A", "T8847G", "G8848C", "C8849T", "T8887A", "A8904C", "A8906C", "A8909G", "A8931G", "T8932C", "G8968A", "G9019T", "T9029G", "-9033G", "A9034-", "A9117G", "T9122C"], "INT": ["E11D", "V37I", "V113I", "A124T", "A125T", "E246G"], "RT-p51": ["R49K", "K82R", "E122K", "E204K", "E248D", "E250D", "K275R", "Q278H", "T360A", "V435A"], "RT-p66": ["R49K", "K82R", "E122K", "E204K", "E248D", "E250D", "K275R", "Q278H", "T360A", "V435A", "K530R"], "gp120": ["N5Q", "L6W", "K34S", "E35T", "Q54H", "N71T", "K93R", "T104N", "-107V", "T110N", "T113N", "-115S", "-116T", "-117P", "-118T", "-119I", "-120S", "-121T", "-122K", "-123D", "-124I", "-125G", "-126M", "K127T", "V137L", "R138K", "V144A", "Q155P", "N158K", "N159D", "N160G", "V180I", "T181N", "K199R", "D202N", "K224R", "E240D", "L249I", "T250K", "N251E", "A253T", "T265I", "N272S", "Q277K", "I279T", "L289F", "Y290T", "K309E", "Q315E", "G323N", "N327-", "K328N", "T329K", "K334S", "S365-", "W367-", "T371V", "-372W", "-373I", "-374D", "-375G", "-376K", "-377L", "-379S", "-381G", "-382V", "-383N", "P389Q", "G401S", "E412A", "L414P", "K416N", "N433D", "N434T", "N435R", "Q436L", "L466I"], "gp41": ["M7V", "L24V", "T27S", "R31K", "L34M", "N42Y", "I62N", "I84L", "H91T", "T94S", "D109T", "G113E", "D125N", "N133T", "T140N", "E143G", "K144R", "Q151K", "K154T", "W161G", "T165S", "R233N", "A267V", "T307I", "V318A", "A325T", "A328G", "I332V"], "nef": ["D24E", "A33V", "R35Q"], "p1": ["I5V"], "p17": ["L8I", "K12E", "M61L", "G62A", "I68L", "Q69L", "L75V", "E90A", "A95S", "T109N", "S111I", "T119A"], "p2": ["T8S"], "p24": ["Q4R", "L6M", "R82M", "T110S", "G116N", "S120G", "S178T"], "p6": ["S3N", "P5T", "-23S", "P24S", "S25-", "K33Q"], "p7": ["P9Q", "K11R", "I12T", "I13V", "N27S", "K41R"], "pro": ["E35D", "K43R", "L63P", "V64I", "H69Y", "V77I"], "rev": ["E10K", "D11E", "R17Q", "I52L", "S67F", "L73F", "L78I", "N86D", "S99G", "S112P"], "tat": ["R19N", "V36Y", "R56Q", "P58T", "Q60E", "Q63P", "H65Y"], "vif": ["R19S", "V31I", "K34Q", "Q36K", "V65I", "E78D", "I109T", "E117D", "T155E"], "vpr": ["V37M", "S41G", "T55A", "T84V", "R85P", "T89S", "S94R"], "vpu": ["L7G", "L18I", "K34R"]}, "labels": {"aa": "INT: E11D, V37I, V113I, A124T, A125T, E246G; RT-p51: R49K, K82R, E122K, E204K, E248D, E250D, K275R, Q278H, T360A, V435A; RT-p66: R49K, K82R, E122K, E204K, E248D, E250D, K275R, Q278H, T360A, V435A, K530R; gp120: N5Q, L6W, K34S, E35T, Q54H, N71T, K93R, T104N, -107V, T110N, T113N, -115S, -116T, -117P, -118T, -119I, -120S, -121T, -122K, -123D, -124I, -125G, -126M, K127T, V137L, R138K, V144A, Q155P, N158K, N159D, N160G, V180I, T181N, K199R, D202N, K224R, E240D, L249I, T250K, N251E, A253T, T265I, N272S, Q277K, I279T, L289F, Y290T, K309E, Q315E, G323N, N327-, K328N, T329K, K334S, S365-, W367-, T371V, -372W, -373I, -374D, -375G, -376K, -377L, -379S, -381G, -382V, -383N, P389Q, G401S, E412A, L414P, K416N, N433D, N434T, N435R, Q436L, L466I; gp41: M7V, L24V, T27S, R31K, L34M, N42Y, I62N, I84L, H91T, T94S, D109T, G113E, D125N, N133T, T140N, E143G, K144R, Q151K, K154T, W161G, T165S, R233N, A267V, T307I, V318A, A325T, A328G, I332V; nef: D24E, A33V, R35Q; p1: I5V; p17: L8I, K12E, M61L, G62A, I68L, Q69L, L75V, E90A, A95S, T109N, S111I, T119A; p2: T8S; p24: Q4R, L6M, R82M, T110S, G116N, S120G, S178T; p6: S3N, P5T, -23S, P24S, S25-, K33Q; p7: P9Q, K11R, I12T, I13V, N27S, K41R; pro: E35D, K43R, L63P, V64I, H69Y, V77I; rev: E10K, D11E, R17Q, I52L, S67F, L73F, L78I, N86D, S99G, S112P; tat: R19N, V36Y, R56Q, P58T, Q60E, Q63P, H65Y; vif: R19S, V31I, K34Q, Q36K, V65I, E78D, I109T, E117D, T155E; vpr: V37M, S41G, T55A, T84V, R85P, T89S, S94R; vpu: L7G, L18I, K34R"}}}]}, {"name": "D_NODE_0000041", "node_attrs": {"div": 0.09870999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A515C", "G518A", "A530G", "A537C", "C558A", "A571T", "A620G", "T852A", "A914G", "A1139G", "G1192A", "G1301A", "A1404G", "T1610C", "C1676T", "G1781A", "T1796C", "C1826G", "C1828A", "G1906A", "C1986A", "C1987A", "A2473G", "G2902A", "G2972A", "G2984A", "C3100T", "A3775G", "C3778T", "G4081A", "C4149T", "G4294A", "A4555C", "C4569T", "T4674C", "A4790C", "G4932A", "A4937C", "A4949G", "C5102T", "G5122A", "A5213G", "A5305T", "T5356C", "C5563A", "T5670G", "G5717A", "C5727T", "G5839A", "G5865A", "G5869T", "T5870C", "T5948G", "C5958A", "G5962A", "T6170G", "G6171T", "G6172A", "A6176-", "C6183-", "T6184-", "A6192C", "-6203G", "-6204G", "-6205G", "-6212A", "-6214A", "A6261T", "T6289G", "A6303G", "-6336A", "A6489C", "T6668G", "C6766T", "G6774A", "G6818A", "A6822G", "T6827C", "-6970G", "-6973G", "-6978A", "-6979T", "-6981C", "-6997G", "-6998C", "-7002A", "-7004G", "-7005A", "-7006G", "T7095A", "A7101C", "A7164C", "A7641G", "T7642A", "G7660A", "T7722C", "G7846A", "A7989G", "G7992A", "A8093C", "A8388G", "G8447A", "C8480T", "C8510T", "C8652A", "T8845A", "C8868A", "T8903C", "A9018C", "G9019T"], "INT": ["A125V", "A265V"], "RT-p51": ["D121Y", "V293I"], "RT-p66": ["D121Y", "V293I"], "gp120": ["S32A", "E136V", "H145Q", "K150R", "T161N", "K212T", "R307K", "G322R", "F325L", "K416T"], "gp41": ["Q229R", "G230D", "I264L"], "nef": ["I16V", "Q104K", "M168K"], "p17": ["M61I", "I68L", "L75I", "Y79F", "T119A"], "p24": ["S41T", "R154K", "S225G"], "p6": ["S50*"], "pro": ["L10V", "M36I", "L63Q"], "rev": ["N82T"], "tat": ["Q63K"], "vif": ["Y30H", "I109L", "A116T", "E117D", "R179K"], "vpu": ["R37K", "M67V", "D78N", "M82D"]}, "labels": {"aa": "INT: A125V, A265V; RT-p51: D121Y, V293I; RT-p66: D121Y, V293I; gp120: S32A, E136V, H145Q, K150R, T161N, K212T, R307K, G322R, F325L, K416T; gp41: Q229R, G230D, I264L; nef: I16V, Q104K, M168K; p17: M61I, I68L, L75I, Y79F, T119A; p24: S41T, R154K, S225G; p6: S50*; pro: L10V, M36I, L63Q; rev: N82T; tat: Q63K; vif: Y30H, I109L, A116T, E117D, R179K; vpu: R37K, M67V, D78N, M82D"}}, "children": [{"name": "MW006058", "node_attrs": {"div": 0.14057999999999998, "accession": "MW006058", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 2007.0}, "Strain_name": {"value": "192002"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G112A", "T163G", "G224A", "C258T", "A265G", "T305A", "T357C", "G361A", "A386G", "C399A", "T473A", "T485C", "T495A", "C540A", "G555A", "A557C", "A558G", "G603A", "A606G", "A617G", "G618A", "C619T", "C623T", "A642G", "A660G", "G671A", "A674G", "A675C", "G687A", "A690-", "C691-", "A692-", "C700T", "G703A", "A704G", "C713T", "G740A", "G752A", "G771T", "A774C", "G818A", "C902T", "C926A", "G989A", "T992G", "A1002G", "C1253T", "T1263A", "T1271G", "T1310C", "A1412G", "A1415G", "T1421C", "A1433C", "A1450G", "G1452-", "C1453-", "A1454-", "G1455A", "G1458A", "A1463G", "A1475G", "A1498G", "A1536C", "G1553A", "A1642G", "A1644C", "G1687A", "C1693T", "-1746A", "-1747C", "-1748C", "A1758G", "G1773A", "A1786G", "G1794A", "G1845A", "A1856G", "A1861G", "G1898A", "A1899G", "A1908G", "A1982G", "C2003T", "A2227T", "A2230G", "T2266C", "A2314G", "T2365C", "C2393T", "A2407G", "T2449A", "T2453C", "C2464T", "T2479C", "A2548G", "A2566G", "A2579T", "T2581C", "C2596T", "A2611G", "A2706C", "A2715C", "A2716C", "A2727G", "A2845C", "C2857T", "C2899T", "G2951A", "G2980A", "C3023A", "A3071G", "A3151G", "A3164G", "C3175A", "G3188A", "G3205A", "G3238A", "T3262C", "A3279G", "C3303T", "A3304G", "G3340A", "C3346T", "T3364C", "G3442A", "A3490G", "C3496T", "G3562A", "A3565G", "A3622G", "C3692T", "A3694G", "A3766G", "A3804G", "A3816G", "A3825G", "T3853C", "A3871G", "A3910G", "T3967C", "A4064G", "G4092C", "A4108G", "A4111G", "G4145A", "T4153A", "C4201A", "A4231G", "A4243G", "A4273G", "A4293G", "A4525C", "A4570G", "G4582A", "T4606C", "A4643C", "A4682G", "A4694G", "A4709G", "C4725T", "C4726T", "C4730T", "A4781G", "A4786G", "A4787G", "C4803A", "T4832G", "C4889A", "A4911C", "C4975T", "A5085C", "G5086A", "G5090A", "G5093A", "C5125T", "T5188A", "G5195A", "A5215G", "T5275G", "A5302G", "G5359C", "T5382C", "G5432A", "G5433A", "T5475C", "C5479A", "A5480C", "T5484G", "C5490T", "G5491T", "C5530A", "A5556G", "G5557A", "G5561A", "C5579T", "C5663T", "G5696A", "G5699A", "G5702A", "A5720G", "G5781C", "A5784G", "T5788C", "G5794A", "C5797A", "G5842A", "T5859G", "G5864A", "A5866T", "A5935T", "A5972G", "C6010T", "C6026T", "C6067T", "G6074A", "G6079A", "A6142G", "T6155C", "A6158C", "C6165G", "T6171C", "-6175A", "-6176T", "-6179A", "-6180A", "-6181T", "-6183A", "-6184A", "-6186C", "A6188G", "T6193A", "A6197-", "-6202G", "-6207T", "-6208A", "-6209C", "-6211G", "-6213C", "A6215C", "-6216A", "-6217G", "T6244C", "A6273G", "G6289A", "G6313A", "A6318C", "A6327G", "A6329G", "A6332G", "A6333G", "T6334A", "T6337C", "A6338-", "G6339-", "C6340-", "G6382A", "T6400C", "A6436T", "A6442G", "G6475A", "C6489T", "A6505G", "A6532G", "T6551C", "C6619T", "G6664A", "G6668A", "A6685G", "A6686G", "T6688G", "A6689G", "A6706G", "G6712A", "A6723T", "C6732A", "A6733T", "A6734G", "C6758T", "A6765C", "G6771A", "G6776A", "G6779A", "A6780G", "A6785C", "C6797T", "A6799C", "A6811T", "G6819A", "A6833-", "A6834-", "C6835-", "G6838C", "C6840A", "T6849C", "A6856G", "C6857A", "C6858A", "A6859C", "G6905A", "G6948T", "C6951G", "A6952T", "T6953-", "G6954-", "G6955-", "A6956T", "-6957T", "-6958T", "A6962G", "A6967T", "T6968A", "-6969A", "-6972T", "A6974G", "-6977A", "-6982T", "-6983A", "A6986G", "T6988G", "A6989C", "-6990T", "T6991A", "-6993A", "-6994T", "-6995G", "-6996G", "-6999T", "C7012T", "C7089A", "C7099T", "C7107T", "A7148G", "A7151G", "A7152T", "T7153A", "G7158A", "C7170T", "A7186G", "A7275G", "C7373A", "G7375A", "G7441A", "C7463A", "C7525A", "A7553G", "G7631A", "A7632C", "G7633A", "A7672G", "C7678G", "C7684T", "A7732G", "G7791A", "A7798C", "A7799C", "A7820T", "A7858G", "T7864C", "T7880G", "T7888A", "T7906C", "G8015C", "C8026T", "T8047C", "A8119G", "A8152G", "T8155C", "T8164C", "C8168T", "G8173A", "A8188G", "T8205A", "G8212A", "C8213G", "A8219G", "C8232T", "G8242A", "A8248T", "G8255T", "A8263C", "C8277T", "C8302T", "A8303G", "C8304T", "G8317A", "C8460T", "C8471T", "G8487C", "T8495C", "C8504T", "A8533G", "T8539C", "G8595C", "G8647A", "G8648T", "A8660G", "A8662G", "C8687T", "A8701T", "A8726C", "A8750C", "G8798A", "T8832C", "T8835C", "G8844A", "A8868G", "C8869A", "A8886C", "T8887A", "C8928A", "G8933A", "C8934A", "T8971C", "G9026T", "T9074G", "T9075C"], "INT": ["E10G", "K14R", "N17S", "T97A", "G106A", "A124T", "K173R"], "RT-p51": ["E44D", "S162C", "E204A", "E207A", "K211R", "E250D", "A286T", "E297K", "L310I", "I326V", "M357V", "V365I", "K395R", "T403M"], "RT-p66": ["E44D", "S162C", "E204A", "E207A", "K211R", "E250D", "A286T", "E297K", "L310I", "I326V", "M357V", "V365I", "K395R", "T403M", "S519N"], "gp120": ["V2G", "G4N", "I40V", "E74K", "N102H", "T104S", "E105D", "-106A", "-107K", "-109K", "N111A", "K140R", "Q155P", "N158G", "N159D", "N160G", "S162-", "T212I", "S278G", "I279V", "L289F", "Y290F", "I294V", "H302Y", "N304T", "S306N", "A308T", "K309R", "N311H", "Q315Y", "K319N", "R322K", "N327-", "K328N", "T329K", "I332T", "P335N", "G351R", "S365I", "W367-", "N369-", "T371F", "-372N", "-373G", "-374T", "-375K", "-376M", "-377D", "-379T", "-381E", "-382L", "-383N", "D384G", "L414Q", "S418L", "N432D", "N433V", "S437T", "T439I", "K474R"], "gp41": ["L24I", "L54M", "S74R", "I84V", "E110T", "D125E", "S163N", "K166Q", "I173L", "L193V", "N195K", "V238L", "I301N", "L304V", "T306A", "A310V", "V318F", "E320D", "A325V", "T334V"], "nef": ["H40Y", "A49P", "E64A", "V66A", "V85L", "W102Y", "Q107R", "Y120F", "P176E", "M182Q", "L198M"], "p1": ["K4R", "I5L"], "p17": ["S9N", "S54T", "Q69K", "E74N", "I75V", "E90K", "R91G", "A95M", "K103E", "T109A", "K114Q", "A118T", "A120-", "T122I", "R123K"], "p2": ["N9-", "A10S", "A11T", "A12T", "I13M"], "p24": ["A14S", "I15L", "H87Q", "I91V", "S178T", "D180E"], "p6": ["S3N", "P5L", "-23T", "K27E", "D32N", "Y36C", "A39T"], "p7": ["K11R", "I24L", "R26K"], "pro": ["G16E", "K20E", "E34R", "N37S", "I62V", "H69Y"], "rev": ["S5R", "K14R", "V16I", "G56A", "L60F", "S67P", "T91A", "I102V", "S103P", "S106P", "P107L", "V109I", "T114A"], "tat": ["R19K", "Q35T", "V39L", "G61S", "G62D", "P68L"], "vif": ["V7A", "R19S", "P47L", "K67R", "H73N", "T130I", "R167Q", "T180I"], "vpr": ["S28R", "V31I", "R85P", "S93P"], "vpu": ["A19V", "C30Y", "R31K", "R32K", "K38R", "E58D", "E60D", "L61T", "S62E", "A63E", "V65S", "E66T", "V67I", "G68-", "-69V", "-70E", "-71M", "-72G", "V79I"]}, "labels": {"aa": "INT: E10G, K14R, N17S, T97A, G106A, A124T, K173R; RT-p51: E44D, S162C, E204A, E207A, K211R, E250D, A286T, E297K, L310I, I326V, M357V, V365I, K395R, T403M; RT-p66: E44D, S162C, E204A, E207A, K211R, E250D, A286T, E297K, L310I, I326V, M357V, V365I, K395R, T403M, S519N; gp120: V2G, G4N, I40V, E74K, N102H, T104S, E105D, -106A, -107K, -109K, N111A, K140R, Q155P, N158G, N159D, N160G, S162-, T212I, S278G, I279V, L289F, Y290F, I294V, H302Y, N304T, S306N, A308T, K309R, N311H, Q315Y, K319N, R322K, N327-, K328N, T329K, I332T, P335N, G351R, S365I, W367-, N369-, T371F, -372N, -373G, -374T, -375K, -376M, -377D, -379T, -381E, -382L, -383N, D384G, L414Q, S418L, N432D, N433V, S437T, T439I, K474R; gp41: L24I, L54M, S74R, I84V, E110T, D125E, S163N, K166Q, I173L, L193V, N195K, V238L, I301N, L304V, T306A, A310V, V318F, E320D, A325V, T334V; nef: H40Y, A49P, E64A, V66A, V85L, W102Y, Q107R, Y120F, P176E, M182Q, L198M; p1: K4R, I5L; p17: S9N, S54T, Q69K, E74N, I75V, E90K, R91G, A95M, K103E, T109A, K114Q, A118T, A120-, T122I, R123K; p2: N9-, A10S, A11T, A12T, I13M; p24: A14S, I15L, H87Q, I91V, S178T, D180E; p6: S3N, P5L, -23T, K27E, D32N, Y36C, A39T; p7: K11R, I24L, R26K; pro: G16E, K20E, E34R, N37S, I62V, H69Y; rev: S5R, K14R, V16I, G56A, L60F, S67P, T91A, I102V, S103P, S106P, P107L, V109I, T114A; tat: R19K, Q35T, V39L, G61S, G62D, P68L; vif: V7A, R19S, P47L, K67R, H73N, T130I, R167Q, T180I; vpr: S28R, V31I, R85P, S93P; vpu: A19V, C30Y, R31K, R32K, K38R, E58D, E60D, L61T, S62E, A63E, V65S, E66T, V67I, G68-, -69V, -70E, -71M, -72G, V79I"}}}, {"name": "AF484486", "node_attrs": {"div": 0.12991, "accession": "AF484486", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UGD26830"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A356C", "G407A", "G409T", "A418G", "C525T", "G608A", "A690G", "C773A", "G815A", "A836G", "A869G", "T885C", "C890T", "A899G", "A905C", "A965G", "T1052A", "C1060G", "C1118A", "T1280C", "C1456T", "G1487A", "C1490A", "C1492A", "G1495A", "T1501A", "A1543G", "T1574C", "A1588G", "C1613T", "G1725A", "A1745C", "G1766-", "C1767-", "A1768-", "G1769-", "A1770-", "A1771-", "A1776G", "A1780G", "A1857G", "C1960T", "A2056G", "G2134A", "T2386G", "C2452T", "T2479A", "A2572C", "G2580A", "A2602G", "A2617G", "T2654C", "A2722C", "C2749T", "A2767G", "C2829T", "A2830G", "C2909T", "T2930C", "C2935T", "A2968G", "A2985C", "A3080C", "A3127G", "A3130G", "A3145G", "T3165C", "G3221A", "A3226T", "A3241T", "A3277C", "A3283G", "G3316A", "C3376T", "G3388A", "A3456G", "G3487A", "A3592T", "A3651G", "A3676G", "A3684G", "C3688T", "T3799G", "G3859A", "A3880G", "A3961G", "C3995T", "G4183A", "T4234A", "A4249G", "A4261C", "C4428T", "G4597A", "G4652C", "G4677A", "C4692A", "A4736G", "T4772C", "A4775G", "A4820C", "G4864A", "A4904G", "A4911T", "A4951G", "A4956C", "A5024G", "A5061G", "T5062A", "C5091T", "G5114C", "G5137A", "A5225G", "A5370G", "G5386A", "C5397G", "C5425A", "G5433C", "C5445T", "G5448T", "G5482A", "T5483A", "G5560A", "A5563G", "C5614T", "G5635A", "A5708G", "A5715C", "A5718G", "T5728A", "G5781A", "A5793C", "G5794T", "G5805T", "A5806G", "C5916A", "C5917T", "A5926C", "T5929C", "A5995G", "A6015G", "A6024T", "C6037T", "T6166A", "G6167A", "A6173-", "A6174-", "A6177-", "T6178-", "A6182-", "A6185-", "T6187-", "A6188-", "C6189-", "C6190-", "-6194A", "-6195G", "-6196C", "-6198G", "-6199C", "-6200A", "-6201C", "-6202T", "-6207G", "-6208G", "-6209A", "T6210A", "-6211T", "-6213T", "-6216G", "-6217T", "A6219G", "-6220G", "-6221G", "-6222A", "-6223C", "-6224A", "-6225T", "-6226A", "-6227G", "-6228G", "-6229A", "G6263T", "G6269A", "G6326A", "A6330C", "A6333C", "T6372C", "T6373G", "A6376C", "C6386T", "G6392A", "C6396A", "G6403A", "G6463A", "A6525G", "G6535A", "G6547A", "C6563T", "A6573G", "G6577A", "A6584G", "A6605G", "T6607C", "T6641A", "A6669G", "T6676C", "A6695C", "C6721A", "A6723G", "T6724G", "G6743A", "T6745C", "C6777T", "A6780C", "C6797G", "A6798G", "T6808C", "A6809G", "C6835T", "A6848G", "T6849A", "A6859G", "G6894C", "T6916C", "C6922T", "-6957G", "-6958G", "-6969G", "-6972G", "-6977G", "-6982A", "-6983T", "A6987G", "-6990G", "-6993C", "-6994A", "-6995A", "-6996A", "-6999C", "A7001G", "A7010C", "A7027G", "A7046C", "G7056A", "A7065G", "C7094A", "A7096C", "A7115G", "T7172A", "A7177G", "G7199A", "A7246G", 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"T8845C", "T8847A", "G8848A", "G8864C", "A8886G", "G8905A", "T8914A", "C8921T", "A8930G", "G8933A", "T8993C", "G8994A", "A9005G", "A9018C", "T9072C", "T9097C", "C9133T"], "INT": ["A124N", "I182V", "T206S", "D207E"], "RT-p51": ["T69S", "E122K", "Q174K", "M178V", "V179I", "R277K", "E297K", "A304E", "M357T", "Q377Y", "E404D", "F416Y", "V435I", "A437V"], "RT-p66": ["T69S", "E122K", "Q174K", "M178V", "V179I", "R277K", "E297K", "A304E", "M357T", "Q377Y", "E404D", "F416Y", "V435I", "A437V", "V496I"], "gp120": ["T3A", "G4E", "K34V", "A35P", "E59D", "T104I", "N108-", "T110-", "N111-", "T112-", "-120I", "-121D", "-122E", "-123K", "-124M", "-126V", "L147V", "K150R", "L151P", "Q155P", "I156M", "N159-", "N160-", "T161-", "I173V", "V180I", "E183D", "F195Y", "D202N", "L249H", "T265P", "N272S", "I279M", "L289I", "N293K", "D297N", "R307E", "A308E", "Q315R", "Q316G", "G322K", "F325Y", "K334E", "P341L", "-366K", "-368G", "S370D", "N378-", "T380-", "P389Q", "R391K", "K404R", "L414Q", "A432I", "N433G", "N434G", "S436E", "R462K", "K472R"], "gp41": ["M7V", "L33V", "N96T", "S101A", "E110V", "L130E", "S133R", "K166N", "K172R", "L193V", "F206L", "L210I", "P216L", "D217E", "Q229R", "G232D", "R236Q", "R259H", "D262S", "T268A", "I270T", "L273I", "N298S", "V326F"], "nef": ["A32P", "T51N", "P53A", "D54A", "N64S", "A84S", "V85L", "E98D", "Q104P", "H116N", "D149E", "M168A", "C169N", "E174D", "M182V", "R188K", "F191Y"], "p1": ["I5F"], "p17": ["K12Q", "E55G", "G62K", "Y79F", "R91K", "K113E", "T119A", "A120-"], "p2": ["A7L", "A10-", "A12S"], "p24": ["L6M", "I15L", "S16T", "A31N", "Q50T", "L83T", "G116A", "A204S", "S225G"], "p6": ["T8S", "S14I", "I21M", "-23L", "S25-", "L35T", "Y36C"], "p7": ["R10K", "K11R", "I12N"], "pro": ["M36I", "K45R"], "rev": ["D7V", "E10D", "P28Y", "Q36K", "R80K", "N86S", "T91D", "H100N", "I102V", "V109I", "T114A", "K115E", "E116K"], "tat": ["N7S", "P21A", "K29Q", "R53S", "P58S", "P59S", "G61S", "H65N", "I69V", "K71E", "S74L", "P81S", "T82K"], "vif": ["K22N", "Q36K", "P47T", "E78D", "T155K", "R167K", "R184K", "T188I", "M189I"], "vpr": ["E17Q", "S28A", "V37T", "H45Y", "E48A", "R85L", "Q86L", "S96P"], "vpu": ["V5Q", "A11G", "V13I", "T24S", "F27Y", "C30Y", "L33I", "K34R", "R35K", "A50E", "-69Q", "H73-", "V79I", "M82I"]}, "labels": {"aa": "INT: A124N, I182V, T206S, D207E; RT-p51: T69S, E122K, Q174K, M178V, V179I, R277K, E297K, A304E, M357T, Q377Y, E404D, F416Y, V435I, A437V; RT-p66: T69S, E122K, Q174K, M178V, V179I, R277K, E297K, A304E, M357T, Q377Y, E404D, F416Y, V435I, A437V, V496I; gp120: T3A, G4E, K34V, A35P, E59D, T104I, N108-, T110-, N111-, T112-, -120I, -121D, -122E, -123K, -124M, -126V, L147V, K150R, L151P, Q155P, I156M, N159-, N160-, T161-, I173V, V180I, E183D, F195Y, D202N, L249H, T265P, N272S, I279M, L289I, N293K, D297N, R307E, A308E, Q315R, Q316G, G322K, F325Y, K334E, P341L, -366K, -368G, S370D, N378-, T380-, P389Q, R391K, K404R, L414Q, A432I, N433G, N434G, S436E, R462K, K472R; gp41: M7V, L33V, N96T, S101A, E110V, L130E, S133R, K166N, K172R, L193V, F206L, L210I, P216L, D217E, Q229R, G232D, R236Q, R259H, D262S, T268A, I270T, L273I, N298S, V326F; nef: A32P, T51N, P53A, D54A, N64S, A84S, V85L, E98D, Q104P, H116N, D149E, M168A, C169N, E174D, M182V, R188K, F191Y; p1: I5F; p17: K12Q, E55G, G62K, Y79F, R91K, K113E, T119A, A120-; p2: A7L, A10-, A12S; p24: L6M, I15L, S16T, A31N, Q50T, L83T, G116A, A204S, S225G; p6: T8S, S14I, I21M, -23L, S25-, L35T, Y36C; p7: R10K, K11R, I12N; pro: M36I, K45R; rev: D7V, E10D, P28Y, Q36K, R80K, N86S, T91D, H100N, I102V, V109I, T114A, K115E, E116K; tat: N7S, P21A, K29Q, R53S, P58S, P59S, G61S, H65N, I69V, K71E, S74L, P81S, T82K; vif: K22N, Q36K, P47T, E78D, T155K, R167K, R184K, T188I, M189I; vpr: E17Q, S28A, V37T, H45Y, E48A, R85L, Q86L, S96P; vpu: V5Q, A11G, V13I, T24S, F27Y, C30Y, L33I, K34R, R35K, A50E, -69Q, H73-, V79I, M82I"}}}, {"name": "MW006061", "node_attrs": {"div": 0.13399, "accession": "MW006061", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 2007.0}, "Strain_name": {"value": "193005"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A161C", "C227A", "G289A", "A380T", "G394A", "G395C", "C413A", "A418G", "A419G", "T434C", "T466A", "A508G", "A516C", "C528G", "A537G", "A556G", "T560C", "A599G", "G608A", "G615A", "C623T", "C661A", "C707T", "C767T", "C794T", "A810G", "G815A", "C823G", "G829A", "T851C", "T992G", "T1003C", "G1031A", "C1061T", "G1090A", "A1142C", "G1205A", "A1359T", "A1364G", "G1394A", "A1400G", "C1453A", "A1454T", "G1455A", "C1517T", "G1532A", "T1628A", "T1741C", "T1791C", "G1794A", "A1804G", "C1853T", "T1978A", "A1987T", "A2154G", "C2195T", "T2206C", "A2210G", "C2211A", "A2212T", "A2215C", "G2248A", "C2263T", "A2446G", "A2457G", "A2461G", "C2464T", "T2494A", "C2503T", "T2527C", "A2572C", "T2597C", "T2770C", "C2822T", "A2839C", "T2873C", "C2899T", "T2905C", "A2920G", "A2923G", "A2926G", "A2974G", "A3031G", "G3046A", "A3079G", "A3127G", "A3214G", "C3252T", "A3292C", "G3307A", "T3359C", "G3398C", "C3415T", "T3469C", "G3494A", "C3500A", "A3503G", "G3562A", "A3571G", "A3595G", "G3664A", "A3676C", "G3679A", "G3685A", "C3691T", "C3712T", "A3756G", "G3781A", "T3799C", "C3856T", "G3868A", "T3923A", "T3970C", "A3985G", "C3995T", "G4081A", "A4150G", "A4306G", "C4321T", "T4471A", "A4474C", "T4585C", "G4642A", "A4643C", "C4665T", "T4674C", "A4687G", "A4694G", "C4730T", "C4754T", "T4805G", "T4928C", "A4974G", "A4993C", "C5006T", "A5007C", "A5036C", "A5049T", "A5051T", "A5057G", "A5063T", "A5065G", "A5069G", "C5091T", "A5213C", "C5242T", "C5263A", "T5319A", "C5371T", "A5372G", "C5397A", "A5431C", "G5432A", "G5448A", "G5560A", "C5563G", "A5612C", "A5698G", "G5699T", "G5712A", "G5805A", "T5857G", "C5862T", "A5867G", "T5870G", "T5871G", "A5896G", "A5972G", "C5989T", "A6023G", "G6029A", "T6049C", "A6059G", "G6076A", "A6092G", "C6097T", "C6163T", "G6167A", "T6170G", "G6171C", "G6172C", "-6175G", "A6176T", "A6177T", "-6194T", "-6196T", "T6199G", "-6201G", "-6202C", "-6203G", "-6204A", "-6205G", "-6207G", "-6208T", "-6209C", "-6211A", "-6212C", "-6217A", "-6221G", "-6229G", "G6263T", "G6267A", "G6284A", "C6287T", "C6317G", "G6326A", "-6336G", "-6337C", "G6382A", "G6391A", "G6466C", "A6471C", "G6475A", "C6477T", "A6490C", "G6577A", "G6593A", "C6601T", "A6602T", "T6613A", "A6616C", "T6618C", "A6654C", "C6660T", "A6679G", "A6684G", "A6689G", "T6690A", "-6697G", "A6703-", "A6714G", "T6719C", "A6723T", "A6731T", "A6732C", "T6735A", "C6752A", "G6776A", "T6827C", "A6836T", "A6837C", "A6845G", "T6849C", "A6855G", "A6856T", "G6865A", "C6874T", "C6875A", "T6883A", "C6892T", "G6910A", "C6922T", "C6925T", "T6928C", "C6938T", "T6949C", "A6952T", "-6957A", "T6961C", "T6964C", "-6967T", "-6968T", "-6969A", "-6970T", "-6971A", "-6972G", "-6973C", "-6981G", "-6982G", "-6983T", "A6989G", "T6991C", "-6993C", "-6994A", "-6995C", "-6996A", "-6997G", "-6998T", "-7002A", "A7007-", "C7012A", "A7015T", "C7018T", "A7033G", "T7039A", "A7040G", "C7045T", "G7055A", "A7064C", "A7102C", "T7106A", "T7114C", "T7127A", "G7132A", "T7144A", "T7150C", "G7181A", "G7182C", "G7190A", "G7197A", "A7241C", "C7250A", "G7357T", "C7397G", "G7399A", "T7400C", "G7459A", "A7533G", "T7622A", "C7625A", "G7631T", "G7633T", "T7642A", "G7658C", "A7666G", "G7712A", "A7721G", "C7742A", "C7754G", "C7762T", "T7789C", "A7790G", "G7791A", "A7796T", "T7880A", "A7885C", "T7906C", "G7918A", "C7931T", "G8014A", "A8093C", "T8155C", "G8158C", "G8170A", "T8181G", "G8216A", "A8219G", "G8231A", "A8275G", "T8280C", "A8294C", "C8304G", "C8331T", "C8336T", "A8370T", "A8378C", "A8388G", "A8402G", "G8404A", "A8426T", "A8438T", "C8440T", "G8453A", "A8456C", "C8460T", "G8492T", "T8495C", "C8652A", "T8675C", "C8687T", "C8702T", "A8717G", "T8789C", "C8790A", "T8835C", "G8844A", "C8869T", "G8933C", "C8960T", "C8967T", "G9006A", "C9012T", "C9028A", "T9029C", "G9030T", "-9033G", "T9074C", "T9180C", "C9181T"], "INT": ["L50M", "D232E"], "RT-p51": ["K20R", "T39D", "D121C", "P243S", "E248D", "T386I", "E399D", "V435L"], "RT-p66": ["K20R", "T39D", "D121C", "P243S", "E248D", "T386I", "E399D", "V435L", "V467I", "L469I", "T470A", "K527N", "N554S"], "gp120": ["S1R", "T3I", "N5E", "L6G", "I40V", "I57V", "E59K", "K69E", "I80V", "D105N", "-106A", "-107K", "N108F", "T112A", "-113N", "-114S", "-115T", "-116G", "-117N", "-118T", "-119T", "-120E", "-121S", "-122P", "-123L", "-124T"], "gp41": ["Q32E", "K77R", "S107T", "L108I", "D109E", "E110Y", "N113E", "E119Q", "L130V", "E137K", "T140V", "Q147K", "Q151E", "S163D", "T165S", "L193I", "L210F", "I264L", "I293S", "F304L", "D305N", "T306A", "A310T", "V326A", "N331H", "T334R", "A343V"], "nef": ["I10L", "I16V", "I20M", "R21K", "E28D", "A33V", "E38D", "H40Y", "Q50H", "Q104T", "P150T", "P176L"], "p17": ["E15D", "R20H", "S26R", "K28R", "F44Y", "K58R", "M61L", "Q65E", "I68V", "E74G", "V94I", "T109N"], "p2": ["T8S", "A10N", "A11T"], "p24": ["I27V", "A31G", "S33N", "H87Q", "V91A", "S120N", "T210S"], "p6": ["I21T", "A39T", "K42R"], "rev": ["P28L", "G56S", "N82T", "S103P", "V104L", "A108T", "D111E"], "tat": ["N7K", "R19Q", "G62S", "Q63E"], "vif": ["R19N", "H27Y", "Y30H", "K34R", "H73Q", "T130A", "Q136P", "K141Q", "T155S", "K160R"], "vpr": ["V37P", "F72Y", "T89M"], "vpu": ["Q2P", "R31V"]}, "labels": {"aa": "INT: L50M, D232E; RT-p51: K20R, T39D, D121C, P243S, E248D, T386I, E399D, V435L; RT-p66: K20R, T39D, D121C, P243S, E248D, T386I, E399D, V435L, V467I, L469I, T470A, K527N, N554S; gp120: S1R, T3I, N5E, L6G, I40V, I57V, E59K, K69E, I80V, D105N, -106A, -107K, N108F, T112A, -113N, -114S, -115T, -116G, -117N, -118T, -119T, -120E, -121S, -122P, -123L, -124T; gp41: Q32E, K77R, S107T, L108I, D109E, E110Y, N113E, E119Q, L130V, E137K, T140V, Q147K, Q151E, S163D, T165S, L193I, L210F, I264L, I293S, F304L, D305N, T306A, A310T, V326A, N331H, T334R, A343V; nef: I10L, I16V, I20M, R21K, E28D, A33V, E38D, H40Y, Q50H, Q104T, P150T, P176L; p17: E15D, R20H, S26R, K28R, F44Y, K58R, M61L, Q65E, I68V, E74G, V94I, T109N; p2: T8S, A10N, A11T; p24: I27V, A31G, S33N, H87Q, V91A, S120N, T210S; p6: I21T, A39T, K42R; rev: P28L, G56S, N82T, S103P, V104L, A108T, D111E; tat: N7K, R19Q, G62S, Q63E; vif: R19N, H27Y, Y30H, K34R, H73Q, T130A, Q136P, K141Q, T155S, K160R; vpr: V37P, F72Y, T89M; vpu: Q2P, R31V"}}}]}, {"name": "D_NODE_0000044", "node_attrs": {"div": 0.08911, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A5225G", "-6179G", "-6181C", "-6186C", "T6668A", "C7094A", "G7640A", "A8147C", "G8595T"], "RT-p51": ["D121Y"], "RT-p66": ["D121Y"], "gp120": ["D384-", "L414I"], "gp41": ["K166N", "I282L"], "nef": ["V85L", "Y202F"], "rev": ["H100P"], "vpr": ["S41G"]}, "labels": {"aa": "RT-p51: D121Y; RT-p66: D121Y; gp120: D384-, L414I; gp41: K166N, I282L; nef: V85L, Y202F; rev: H100P; vpr: S41G"}}, "children": [{"name": "D_NODE_0000045", "node_attrs": {"div": 0.09369, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C558A", "C713T", "T731C", "A1002C", "T1003C", "G1781A", "A2314G", "G3154A", "A3292G", "G3477A", "A3676G", "G3715A", "G4057A", "C4428T", "C4721A", "C4730T", "G4892A", "A5213G", "C5539A", "T5621A", "T5826C", "A5954G", "A6191G", "-6221A", "-6225G", "-6226C", "T6231-", "A6270G", "-6336C", "-6337T", "A6525G", "C6683A", "A6714G", "A6731G", "A6780G", "C6843A", "G6935A", "G6936A", "-6956A", "-6957A", "-6958T", "-6981A", "-6982G", "-6983T", "T6991C", "-6993C", "-6997G", "-7008A", "-7009T", "C7597T", "G7689A", "G8279-", "T8495C", "A8516G", "A8528G", "A8567G", "A8701T", "G8870A", "G8905A", "A8947T"], "INT": ["T218I"], "RT-p51": ["K245Q"], "RT-p66": ["R461K"], "gp120": ["K127-", "K224R", "Q277K", "Q287R", "N293E", "T329K", "-368N", "S370G"], "gp41": ["D109E", "G129D", "F304L"], "nef": ["Y120F", "R188K", "I197M"], "p17": ["L75I"], "p2": ["A11N"], "p24": ["V91P"], "rev": ["S8R"], "vif": ["Q36K", "D45E"], "vpu": ["V5E"]}, "labels": {"aa": "INT: T218I; RT-p51: K245Q; RT-p66: R461K; gp120: K127-, K224R, Q277K, Q287R, N293E, T329K, -368N, S370G; gp41: D109E, G129D, F304L; nef: Y120F, R188K, I197M; p17: L75I; p2: A11N; p24: V91P; rev: S8R; vif: Q36K, D45E; vpu: V5E"}}, "children": [{"name": "AY322189", "node_attrs": {"div": 0.14094, "accession": "AY322189", "clade_membership": {"value": "D"}, "country": {"value": "KE"}, "date": {"value": 1997.0}, "Strain_name": {"value": "ML415_2"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T155G", "G167-", "G280-", "A301G", "C399A", "G401C", "A424G", "A435T", "A454G", "A458T", "C503G", "A527T", "G534A", "C590T", "G603C", "C747T", "G771C", "G818A", "A878C", "A887G", "A891G", "C892T", "A938T", "G944A", "A1017C", "A1106G", "A1115C", "G1192A", "A1242G", "C1243T", "C1245T", "A1343T", "T1385C", "G1394A", "A1412G", "C1456T", "G1495A", "A1498G", "A1567G", "G1568A", "C1571T", "A1587C", "T1646C", "C1656A", "G1661A", "T1681C", "C1693T", "G1697A", "C1724T", "T1730C", "A1742G", "T1752C", "A1759G", "A1771G", "A1772G", "A1786G", "T1873C", "C1954A", "T1957C", "G1972A", "C1986T", "A2008G", "A2014T", "G2027A", "T2080C", "T2116A", "A2362G", "T2440C", "T2456C", "A2551G", "A2616G", "T2638C", "A2674G", "T2694G", "A2695C", "A2698G", "A2828C", "A2830G", "T2905C", "C2941T", "G2951A", "C2960T", "A2968T", "C2978T", "G2980A", "G3046A", "A3088G", "A3103G", "A3173G", "T3181C", "A3192G", "A3375C", "G3385A", "T3399C", "G3427A", "G3438A", "G3442A", "A3448G", "C3500A", "C3508T", "C3549T", "G3553A", "G3562A", "G3581A", "A3675G", "A3760G", "A3766G", "A3770G", "A3787G", "G3907A", "T3923A", "T3976C", "A4027G", "C4076A", "A4084G", "G4109A", "C4162A", "C4177T", "A4178G", "C4180T", "T4236C", "A4246G", "C4318T", "A4391T", "A4417G", "A4526C", "T4674C", "G4677A", "A4686C", "A4693G", "A4717T", "T4722A", "C4725A", "C4726G", "A4727G", "A4728C", "A4820T", "A4860G", "T4914C", "T4967A", "C4975T", "T4991C", "A4993C", "A5005C", "A5007C", "C5034T", "A5039T", "A5215T", "A5248G", "C5303T", "G5308A", "A5335G", "A5336C", "A5345G", "T5356A", "C5393A", "G5433T", "T5440C", "C5530T", "C5548T", "C5551T", "T5604A", "C5611A", "A5613T", "C5614G", "T5617C", "T5627C", 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"V326F", "I329F"], "nef": ["E18D", "D24A", "T48A", "G83A", "L85F", "H89F", "H116N", "D149E", "D156A", "F191Y"], "p1": ["H9N"], "p17": ["R22S", "K30R", "I34L", "E40G", "A67T", "E90Q"], "p2": ["A12V"], "p24": ["A14P", "T54V", "L69F", "M96L", "E128D", "R154K", "T171V"], "p6": ["L1P", "P5L", "I21M", "S25P", "K27R", "K31R", "Y36C"], "p7": ["R10K", "K11R", "K34R", "K41Q"], "pro": ["V77I"], "rev": ["R50K", "H53D", "I55L", "E57A", "N82S", "N84D", "S92P", "S106P", "E116K"], "tat": ["P6H", "R19S", "C22R", "R52W", "P58S", "P59S", "P77S", "D80N"], "vif": ["Y30H", "V31I", "K34Q", "K36R", "Y44F", "C46S", "P47R", "N48H", "E78D", "R92G", "Y110H", "H127Q", "T130I", "Q136P", "N140T", "K141Q"], "vpr": ["Q77R", "T84N"], "vpu": ["Q2N", "P3A", "L7S", "A15T", "L18I", "F27I", "C30W", "R31I", "R35K", "W41R", "D44E", "E60D", "L61T", "S62D", "A63E", "V65A", "E66K", "M67L", "G68-", "-69V", "-70E", "-71M", "-72G", "H73N", "H74Y", "A75D", "W77G", "V79D", "D80N", "D81N", "M82L"]}, "labels": {"aa": "INT: L50M, I84M, L101I, V112I, I135V, M154T, T206S, I251L; RT-p51: Y121H, Q174R, I200S, A286T, E291D, T360A, K366R, Y427S, V435A; RT-p66: Y121H, Q174R, I200S, K245Q, A286T, E291D, T360A, K366R, Y427S, V435A, R448K, L469I, A485V, V496I, K527R, I559V; gp120: V2A, T3A, G4E, K34E, K57V, -106A, -109A, -113S, -114C, -115S, -116T, -117D, N128-, C129-, S130-, F131-, N132-, I133-, T134-, T135-, K140-, K141-, K142-, Q143-, V144-, H145-, L147A, F148T, Y149E, Q155P, I156G, D157V, N160T, T161A, S162A, Y163F, R164C, C168G, N169G, T170A, S171P, A172T, I173V, A176D, V180G, F182I, F195L, K204N, N206S, T208G, P210G, K212C, V214I, V217I, Q218H, C219R, I223G, P225A, V226P, S228P, Q230K, E241D, I243V, L249I, N261K, E262Q, T265P, N267T, I279V, T292I, I294L, I295V, N304A, S306N, R307G, A308T, K309R, K312D, K319T, D323A, L324-, -326L, N327T, T330E, G361N, -366I, -372S, -373Q, -374L, -375E, -377S, -379S, -381E, -382L, -383A, -384G, T385N, K404I, E412A, N433D, N435S, N437Q, I463V, L468I; gp41: L24V, I84L, H91L, N96T, L108Q, E119Q, S133T, E137K, T140N, K144Q, Q147H, Q151K, N166Q, A212V, G215E, G232S, N239H, L263F, I264L, D305N, A310V, I318A, V322I, V326F, I329F; nef: E18D, D24A, T48A, G83A, L85F, H89F, H116N, D149E, D156A, F191Y; p1: H9N; p17: R22S, K30R, I34L, E40G, A67T, E90Q; p2: A12V; p24: A14P, T54V, L69F, M96L, E128D, R154K, T171V; p6: L1P, P5L, I21M, S25P, K27R, K31R, Y36C; p7: R10K, K11R, K34R, K41Q; pro: V77I; rev: R50K, H53D, I55L, E57A, N82S, N84D, S92P, S106P, E116K; tat: P6H, R19S, C22R, R52W, P58S, P59S, P77S, D80N; vif: Y30H, V31I, K34Q, K36R, Y44F, C46S, P47R, N48H, E78D, R92G, Y110H, H127Q, T130I, Q136P, N140T, K141Q; vpr: Q77R, T84N; vpu: Q2N, P3A, L7S, A15T, L18I, F27I, C30W, R31I, R35K, W41R, D44E, E60D, L61T, S62D, A63E, V65A, E66K, M67L, G68-, -69V, -70E, -71M, -72G, H73N, H74Y, A75D, W77G, V79D, D80N, D81N, M82L"}}}, {"name": "AF484483", "node_attrs": {"div": 0.1252, "accession": "AF484483", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UGB32394"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G394A", "G395C", "C413G", "T476C", "T479C", "A516T", "G534T", "A571T", "G608A", "G618A", "G621A", "G677A", "G687A", "A702G", "C714A", "C794T", "A803G", "C827T", "A860G", "T885C", "A1016G", "C1060G", "C1118T", "A1124G", "C1136T", "G1205A", "C1211T", "C1220T", "C1295T", "T1325C", "G1346A", "C1354G", "A1449G", "A1450G", "C1453G", "G1455A", "C1456A", "T1457C", "G1458A", "A1463G", "C1492A", "T1635-", "A1642G", "A1644T", "C1676T", "G1687A", "A1700C", "T1975C", "A1987C", "G1988A", "G2068A", "C2083T", "G2134A", "G2241A", "T2315C", "C2369T", "A2491T", "T2542C", "A2545G", "T2803G", "A2828T", "A2829T", "A2845C", "C2909G", "G2925A", "G2984A", "T3040C", "T3118A", "A3164G", "A3204C", "G3211A", "G3221A", "C3319T", "C3322A", "A3409G", "A3529G", "A3532G", "C3589T", "C3600T", "T3652C", "C3688T", "C3763T", "A3769G", "T3779C", "A3916G", "A4012C", "T4024C", "A4048G", "C4078T", "T4085C", "A4087G", "C4141T", "C4159T", "G4252A", "A4255G", "A4315C", "C4321T", "A4338G", "G4464A", "A4543C", "C4569T", "G4573A", "C4576T", "G4652T", "T4655C", "A4686G", "C4692A", "G4695A", "T4702G", "C4715T", "A4769G", "A4784G", "A4786G", "G4835A", "A4858G", "A4911C", "T4912A", "A4968G", "T5062A", "T5073C", "A5159G", "T5214C", "A5336T", "A5355C", "A5370G", "C5371T", "A5396G", "C5397A", "C5398T", "C5412T", "A5431G", "G5482C", "G5565A", "G5668A", "A5677G", "A5748C", "G5839A", "G5869T", "G5912A", "A5915G", "A5935G", "T5948G", "A5955T", "A6025G", "A6043G", "C6067T", "G6074A", "A6092G", "A6136G", "C6163T", "T6169A", "A6174G", "-6175A", "-6180G", "T6187C", "C6189T", "C6190T", "A6192C", "T6193C", "-6194C", "-6195T", "-6196A", "C6198A", "-6205G", "-6206A", "-6207C", "-6208A", "-6209C", "-6210T", "-6211G", "-6212A", "-6213T", "-6214C", "-6216C", "-6217G", "G6218T", "-6220G", "-6222A", "-6223A", "-6224T", "G6232-", "A6233-", "A6254T", "A6266G", "G6274A", "A6276G", "A6278C", "T6285C", "T6289G", "C6317A", "A6324G", "A6330C", "G6463A", "G6466A", "G6577A", "A6580G", "A6605G", "A6661G", "C6692A", "T6719A", "A6727C", "C6766T", "A6811C", "G6821A", "A6836C", "A6848G", "A6855G", "C6895T", "A6962G", "-6963G", "-6967A", "-6968T", "-6976T", "-6977A", "-6978G", "-6979A", "-6980A", "C6984A", "A6986T", "A6989C", "-6990A", "-6994T", "-6995C", "-6996G", "-6998G", "-6999G", "T7003-", "G7056A", "T7087A", "C7089A", "T7114C", "T7117C", "G7129A", "C7160A", "A7161C", "G7162A", "G7168A", "G7239A", "A7299G", "G7399A", "T7400G", "A7471G", "G7508A", "C7645A", "T7647C", "G7660A", "A7672G", "T7691G", "C7699T", "C7702G", "A7721C", "G7735A", "C7748T", "A7801T", "A7818G", "G7831A", "A7847G", "A7858G", "T7864C", "G7873A", "G7918A", "T7968C", "A7989T", "T8007C", "A8018G", "C8028T", "G8030A", "A8076G", "G8079A", "A8099C", "A8119G", "C8120A", "A8143G", "T8155C", "C8156T", "G8170C", "T8182C", "G8276-", "C8277-", "T8278-", "T8280-", "T8281-", "A8282-", "G8283-", "A8284-", "G8285-", "C8286-", "T8287-", "A8288-", "T8289-", "T8290-", "C8291-", "T8292-", "T8293-", "A8294-", "A8295-", "C8296-", "A8299T", "C8300G", "C8301T", "C8302T", "C8304G", "C8306A", "C8351T", "G8418A", "C8440T", "A8459G", "G8492T", "A8503C", "G8529A", "G8531C", "A8555G", "T8558C", "G8588A", "A8597G", "G8666C", "T8678C", "C8699A", "G8799A", "A8801G", "C8810T", "G8817A", "T8845C", "G8846A", "G8875A", "A8930C", "T8935A", "C9012A", "T9014G", "T9134-"], "INT": ["K188R", "S230N", "E256D", "A265V"], "RT-p51": ["R49K", "Q245L", "E250D", "P272A", "R277K", "E297K", "M357V", "E370A", "A376T"], "RT-p66": ["R49K", "K245L", "E250D", "P272A", "R277K", "E297K", "M357V", "E370A", "A376T", "A502V"], "gp120": ["A20T", "T21A", "S32A", "K34V", "E74K", "I80V", "D105E", "-106W", "-107R", "-109G", "T134S", "R138G", "D139G", "K141R", "K142Q", "V144A", "H145Q", "Q155K", "D157G", "N158D", "N159T", "I242M", "N251D", "H280N", "L289I", "K309G", "K319N", "D323N", "-326N", "N327Q", "K328T", "T330-", "I332V", "K334R", "G361K", "-366T", "T385-", "G401E", "N437T", "R462K", "K482R"], "gp41": ["L33V", "V69I", "N114K", "M115T", "L130V", "S133R", "T140L", "K172R", "M176I", "I182V", "I222T", "Q229L", "I235T", "N239D", "S242L", "A243T", "H258R", "R259H", "I266L", "L273I", "A325-", "V326-", "R327-", "A328-", "I329-", "L330-", "N331-", "P333V", "T334R"], "nef": ["A26T", "A33V", "Q50H", "D54A", "E63N", "E108D", "V153M", "G159R", "M168A", "R178K", "K196R", "L198Q"], "p1": ["L2-"], "p17": ["R20H", "S26R", "M61L", "A67S", "Y79F", "A95T", "D96N", "A118T", "R123G", "Q127K"], "p2": ["N9G", "A10G", "A12T", "I13V"], "p24": ["T110S", "A208G"], "p6": ["S3N"], "p7": ["P9Q"], "pro": ["L63P", "V64I"], "rev": ["R17K", "E57G", "S61N", "N84T", "T91D", "S99G", "S103L", "A108P", "S112P"], "tat": ["N7R", "R19G", "V36L", "*87Q"], "vif": ["K22N", "K34E", "G37R", "L39W", "K67R", "K91R", "I109Q", "I128V", "I159K"], "vpr": ["T19A", "V37A", "Q77H", "T84L", "T89V"], "vpu": ["V21I", "T24A", "R47S", "D78N"]}, "labels": {"aa": "INT: K188R, S230N, E256D, A265V; RT-p51: R49K, Q245L, E250D, P272A, R277K, E297K, M357V, E370A, A376T; RT-p66: R49K, K245L, E250D, P272A, R277K, E297K, M357V, E370A, A376T, A502V; gp120: A20T, T21A, S32A, K34V, E74K, I80V, D105E, -106W, -107R, -109G, T134S, R138G, D139G, K141R, K142Q, V144A, H145Q, Q155K, D157G, N158D, N159T, I242M, N251D, H280N, L289I, K309G, K319N, D323N, -326N, N327Q, K328T, T330-, I332V, K334R, G361K, -366T, T385-, G401E, N437T, R462K, K482R; gp41: L33V, V69I, N114K, M115T, L130V, S133R, T140L, K172R, M176I, I182V, I222T, Q229L, I235T, N239D, S242L, A243T, H258R, R259H, I266L, L273I, A325-, V326-, R327-, A328-, I329-, L330-, N331-, P333V, T334R; nef: A26T, A33V, Q50H, D54A, E63N, E108D, V153M, G159R, M168A, R178K, K196R, L198Q; p1: L2-; p17: R20H, S26R, M61L, A67S, Y79F, A95T, D96N, A118T, R123G, Q127K; p2: N9G, A10G, A12T, I13V; p24: T110S, A208G; p6: S3N; p7: P9Q; pro: L63P, V64I; rev: R17K, E57G, S61N, N84T, T91D, S99G, S103L, A108P, S112P; tat: N7R, R19G, V36L, *87Q; vif: K22N, K34E, G37R, L39W, K67R, K91R, I109Q, I128V, I159K; vpr: T19A, V37A, Q77H, T84L, T89V; vpu: V21I, T24A, R47S, D78N"}}}]}, {"name": "D_NODE_0000046", "node_attrs": {"div": 0.09208999999999999, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["C227A", "G455A", "G1394A", "A2548G", "C5237T", "-6194G", "G6326A", "A6442G", "T6690C", "C6766T", "T6949-", "T7153-", "G7158A", "C7160-", "A7161-", "T7690G", "G8276A", "C8277T", "A9018C"], "gp120": ["N5K", "T161-", "I279T", "A432-"], "gp41": ["A325I"], "vpr": ["H45Y"]}, "labels": {"aa": "gp120: N5K, T161-, I279T, A432-; gp41: A325I; vpr: H45Y"}}, "children": [{"name": "D_NODE_0000047", "node_attrs": {"div": 0.09888, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G518A", "A660G", "C794T", "G818A", "T852A", "T1460C", "A1588G", "A1664G", "A1691G", "C1767A", "G1840A", "G2241A", "G2422A", "G2683A", "A2818G", "A2828G", "C3405T", "A3770G", "C3823T", "C4426T", "T4674C", "G4677A", "G4856A", "A4993C", "A5066G", "A5159G", "G5187A", "A5191G", "C5412T", "C5478T", "G5802A", "G5839A", "T6170-", "G6172-", "-6207G", "-6208A", "-6209A", "G6218-", "A6275C", "C6281A", "C6287A", "T6328-", "T6331-", "A6693G", "C6717T", "T6961-", "A7102C", "G7343A", "C7525A", "A7620G", "A7790G", "A7943C", "A7953C", "G7998A", "A8105G", "G8170C", "C8213T", "A8264T", "C8306A", "T8414G", "G8476A", "T8477C", "A8643G", "A8655C", "G8666T", "C8688A", "G8870A", "T8883C", "A8909G"], "RT-p51": ["R49K", "K245E", "A437V"], "RT-p66": ["R49K", "K245E", "A437V"], "gp120": ["K141Q", "Q143K", "H145S", "H280R", "A288V", "T385-"], "gp41": ["M7L", "A14T", "S74R", "K106R", "T140V", "E148D", "D217A", "G232D", "T268A", "I321L"], "p17": ["M61I", "T109A"], "p24": ["S41T", "V91T"], "p6": ["Q30K"], "p7": ["K41R"], "rev": ["E32A", "N86S", "A108P"], "tat": ["T82P"], "vif": ["Y30H", "V31I", "Q136P"], "vpr": ["T19A", "S28N"]}, "labels": {"aa": "RT-p51: R49K, K245E, A437V; RT-p66: R49K, K245E, A437V; gp120: K141Q, Q143K, H145S, H280R, A288V, T385-; gp41: M7L, A14T, S74R, K106R, T140V, E148D, D217A, G232D, T268A, I321L; p17: M61I, T109A; p24: S41T, V91T; p6: Q30K; p7: K41R; rev: E32A, N86S, A108P; tat: T82P; vif: Y30H, V31I, Q136P; vpr: T19A, S28N"}}, "children": [{"name": "JX236672", "node_attrs": {"div": 0.14923999999999998, "accession": "JX236672", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 2008.0}, "Strain_name": {"value": "p191859"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["T12C", "T23C", "T30C", "A32G", "G112A", "T115A", "G116A", "A133T", "A161C", "T163G", "T200G", "T201C", "A220G", "G224A", "G289C", "A301G", "T357A", "C362T", "G367A", "A369G", "G407A", "T466A", "C482A", "G520C", "T539C", "A556G", "A604C", "G608A", "G614A", "G629A", "G644A", "A690G", "G703A", "A730T", "T731C", "G755A", "A758G", "C767T", "T851C", "A860G", "C890T", "A959G", "T992G", "T1003A", "G1005C", "A1016G", "G1019A", "C1060A", "G1078C", "A1088T", "C1103T", "A1160G", "A1217G", "A1332C", "T1344C", "T1362C", "G1397A", "C1403T", "A1404G", "T1421C", "C1447A", "A1448T", "A1449G", "A1450G", "T1451A", "G1452A", "C1453A", "A1454C", "G1455A", "C1459T", "A1463G", "T1481C", "T1501C", "C1517T", "C1598T", "C1658G", "G1673A", "C1676T", "G1687A", "C1692A", "C1721T", "-1746C", "-1747C", "-1748A", "T1754C", "A1760C", "T1790C", "T1792C", "T1797G", "A1819G", "C1828T", "C1831T", "G1852A", "T1895G", "C1954A", "G1972A", "T1978C", "C1985A", "A1993C", "C1996T", "C2003T", "T2005C", "A2012G", "A2059G", "G2074A", "C2149T", "C2211A", "A2230G", "T2236C", "C2296T", "T2365C", "A2374G", "T2383C", "C2393T", "A2398G", "G2530A", "A2566T", "A2579T", "C2596T", "G2629A", "T2632G", "T2654C", "G2682A", "A2707G", "C2720T", "G2728A", "C2740T", "G2833A", "T2873C", "A2919C", "G2925A", "A2929T", "G3016A", "A3028G", "A3043G", "G3046A", "T3059A", "C3067A", "A3099G", "T3118A", "T3121C", "A3130G", "C3140T", "T3165C", "G3166A", "C3174T", "C3175T", "C3178T", "A3204C", "G3205A", "A3247T", "G3307T", "C3319T", "C3352T", "G3385A", "C3394A", "T3399C", 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"A5790-", "T5791-", "C5792-", "A5793-", "G5794-", "C5795-", "A5796-", "C5797-", "T5798-", "T5801A", "A5806G", "T5807A", "G5808A", "G5809T", "G5810T", "-5812G", "-5813T", "-5814G", "-5815G", "-5816G", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5828T", "A5840T", "T5850C", "G5869A", "C5916A", "C5917T", "A5918G", "T5920C", "A5926G", "T5948G", "A6020G", "A6024T", "C6052T", "T6134C", "-6170A", "G6171A", "-6172T", "A6173G", "A6174T", "-6175A", "-6180T", "C6183T", "T6184A", "C6186A", "A6188G", "A6192C", "-6195G", "-6196A", "-6210A", "-6211T", "-6212A", "-6213T", "-6214C", "-6216T", "-6217C", "-6218C", "-6220A", "-6221T", "-6222A", "-6223G", "-6224A", "-6225C", "-6226A", "-6227G", "-6228G", "-6229A", "-6230A", "A6234C", "A6253G", "C6256T", "G6263T", "G6267A", "G6277A", "A6288C", "G6290T", "A6318C", "A6327C", "-6328A", "A6329G", "-6331A", "-6336A", "-6337T", "A6394G", "A6395T", "G6403A", "C6427T", "T6457C", "G6458A", "A6465C", "G6466A", "C6477A", "A6489C", "G6520A", 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"G8079A", "G8117C", "G8158T", "T8164C", "C8165A", "T8182C", "A8191G", "T8206C", "C8223T", "A8241G", "A8248T", "T8268C", "A8275G", "A8276C", "T8280G", "C8286G", "T8287G", "G8317A", "T8321C", "G8329A", "A8342G", "T8369C", "A8455C", "A8456T", "A8458G", "A8486T", "C8494A", "T8505G", "G8506T", "C8514G", "A8519G", "G8531T", "C8552T", "T8594G", "G8682A", "A8739G", "T8741C", "A8750T", "G8772C", "T8786A", "T8789G", "C8790G", "G8798T", "A8804T", "G8808A", "T8845C", "G8846A", "T8847A", "T8855C", "G8864T", "G8875A", "A8886G", "A8898G", "T8903C", "C8928A", "G8929A", "T8932C", "C8934A", "T8935A", "A8947T", "C8951T", "C8967T", "T8971C", "G9006A", "G9008-", "T9097C", "T9108C", "T9115C", "A9117G"], "INT": ["D41E", "G59E", "L101I", "V113I", "A124N", "V165I", "K173R", "D207N", "D253E"], "RT-p51": ["T39K", "S162C", "M178I", "G196E", "K275T", "R277K", "Q278H", "S322T", "D324E", "D335G", "M357T", "T360I", "E370A", "E404D", "V435A"], "RT-p66": ["T39K", "S162C", "M178I", "G196E", "K275T", "R277K", "Q278H", "S322T", "D324E", "D335G", "M357T", "T360I", "E370A", "E404D", "V435A", "V466I", "L469F", "K512T", "K558R", "I559V"], "gp120": ["T21N", "T22A", "S32A", "I56V", "K57I", "-106N", "-107V", "-109V", "T110I", "K127-", "I133M", "V137L", "R138K", "S145T", "A146S", "Q155P", "N158T", "N159E", "-161N", "T181S", "D202N", "K204T", "T208K", "K212T", "I243M", "N251D", "I255T", "E262K", "V264I", "T265A", "N272S", "L289F", "N293D", "R307K", "A308K", "K309Q", "K312E", "Q315E", "K319E", "-326K", "N327K", "K328T", "T329-", "G361R", "-366T", "-368T", "-372I", "-379E", "-381E", "-382V", "E412A", "I414K", "K416H", "-432S", "N433P", "S436G", "N437T", "E438N", "T439D"], "gp41": ["E110Y", "R122K", "L130V", "V140L", "K144R", "Q147K", "Q151E", "S163A", "T165S", "L193I", "A212T", "V238L", "N239T", "F241L", "A243E", "R259H", "E272Q", "L288I", "T307I", "E313G", "V322A", "I325L", "V326G", "A328G"], "nef": ["D24E", "E38A", "K39R", "S45N", "T51N", "C55V", "L58V", "E63Q", "I101V", "K105Q", "E108D", "V114I", "H116N", "I133V", "E144Q", "D149E", "P150A", "E152D", "E154D", "D156N", "M168A", "C169S", "E174D", "R178K", "M182V", "N186D", "I197T", "L198K"], "p1": ["H9Q"], "p17": ["L8I", "G11E", "K12E", "F44Y", "G62A", "E74G", "E90A", "T119A", "R123K", "Y132F"], "p2": ["T8N", "N9G", "A10N", "A11T", "A12V", "I13M"], "p24": ["H87Q", "T91N", "A92P", "M96I", "T110N", "G116A", "I201L", "S225G"], "p6": ["S3N", "P5T", "-23P", "K27N", "L38S", "S40A", "N47S", "S50L", "S51L"], "p7": ["I12T"], "pro": ["L33V", "L63T", "E65D", "H69Y", "I72V"], "rev": ["D11E", "L22I", "S30N", "A32T", "G56A", "E57D", "L60V", "S61R", "S67P", "G90A", "V104L", "S106H", "S112P", "K115E"], "tat": ["N7S", "R19G", "K24S", "K29Q", "V36L", "P58T", "P68H", "P70S", "R78H"], "vif": ["R19S", "H27Y", "M29I", "K34R", "P47F", "E61D", "K67R", "R93K", "N134I", "T155K", "K158Q"], "vpr": ["E21G", "V37I", "E48D", "T55A", "I60L", "I61V", "T84N", "R85L", "T89-", "S94R"], "vpu": ["Q2K", "L18I", "K34R", "R37K", "K38R", "E60D", "L61E", "S62E", "A63E", "E66G", "H74L", "D78I"]}, "labels": {"aa": "INT: D41E, G59E, L101I, V113I, A124N, V165I, K173R, D207N, D253E; RT-p51: T39K, S162C, M178I, G196E, K275T, R277K, Q278H, S322T, D324E, D335G, M357T, T360I, E370A, E404D, V435A; RT-p66: T39K, S162C, M178I, G196E, K275T, R277K, Q278H, S322T, D324E, D335G, M357T, T360I, E370A, E404D, V435A, V466I, L469F, K512T, K558R, I559V; gp120: T21N, T22A, S32A, I56V, K57I, -106N, -107V, -109V, T110I, K127-, I133M, V137L, R138K, S145T, A146S, Q155P, N158T, N159E, -161N, T181S, D202N, K204T, T208K, K212T, I243M, N251D, I255T, E262K, V264I, T265A, N272S, L289F, N293D, R307K, A308K, K309Q, K312E, Q315E, K319E, -326K, N327K, K328T, T329-, G361R, -366T, -368T, -372I, -379E, -381E, -382V, E412A, I414K, K416H, -432S, N433P, S436G, N437T, E438N, T439D; gp41: E110Y, R122K, L130V, V140L, K144R, Q147K, Q151E, S163A, T165S, L193I, A212T, V238L, N239T, F241L, A243E, R259H, E272Q, L288I, T307I, E313G, V322A, I325L, V326G, A328G; nef: D24E, E38A, K39R, S45N, T51N, C55V, L58V, E63Q, I101V, K105Q, E108D, V114I, H116N, I133V, E144Q, D149E, P150A, E152D, E154D, D156N, M168A, C169S, E174D, R178K, M182V, N186D, I197T, L198K; p1: H9Q; p17: L8I, G11E, K12E, F44Y, G62A, E74G, E90A, T119A, R123K, Y132F; p2: T8N, N9G, A10N, A11T, A12V, I13M; p24: H87Q, T91N, A92P, M96I, T110N, G116A, I201L, S225G; p6: S3N, P5T, -23P, K27N, L38S, S40A, N47S, S50L, S51L; p7: I12T; pro: L33V, L63T, E65D, H69Y, I72V; rev: D11E, L22I, S30N, A32T, G56A, E57D, L60V, S61R, S67P, G90A, V104L, S106H, S112P, K115E; tat: N7S, R19G, K24S, K29Q, V36L, P58T, P68H, P70S, R78H; vif: R19S, H27Y, M29I, K34R, P47F, E61D, K67R, R93K, N134I, T155K, K158Q; vpr: E21G, V37I, E48D, T55A, I60L, I61V, T84N, R85L, T89-, S94R; vpu: Q2K, L18I, K34R, R37K, K38R, E60D, L61E, S62E, A63E, E66G, H74L, D78I"}}}, {"name": "MF109689", "node_attrs": {"div": 0.14334, "accession": "MF109689", "clade_membership": {"value": "D"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "15228_1_51.3"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["G394A", "G412A", "C413G", "A418G", "A431G", "C462A", "A470T", "C503T", "A509G", "A527G", "G534T", "A537C", "A548G", "A562G", "A563G", "C587A", "G603C", "G618A", "G687-", "G709A", "C710T", "C746T", "G771T", "A774C", "A776G", "C879A", "A880C", "A887G", "G908A", "T1003C", "T1004C", "A1010G", "C1013T", "A1070G", "A1088C", "C1118T", "A1139G", "T1172C", "G1205A", "C1253T", "G1313A", "A1327G", "T1331A", "A1340G", "C1350G", "C1354G", "A1361C", "A1418G", "T1481A", "A1485C", "C1492A", "G1495A", "T1501A", "C1523T", "T1537C", "A1544G", "A1567G", "A1660G", "G1661C", "T1722C", "G1725A", "T1741C", "A1777G", "G1778C", "G1781A", "T1791A", "G1794A", "T1796C", "A1804G", "C1853T", "A1907G", "G1942A", "T1978G", "C1985T", "C1986T", "A2002G", "A2023G", "G2027A", "T2035C", "A2075C", "G2134A", "T2158C", "A2164G", "G2173A", "A2182G", "C2195T", "T2245A", "G2341A", "C2356T", "T2365G", "A2413G", "A2414T", "T2456G", "G2462A", "A2473G", "T2479C", "A2519G", "T2542A", "A2613G", "A2626T", "A2695G", "T2737C", "G2761A", "A2764G", "A2767G", "A2773C", "T2788G", "A2794G", "T2800C", "A2842G", "A2881G", "C2899T", "C2909G", "T2939C", "G2940T", "G2972A", "C2975G", "G3029A", "A3031C", "A3127G", "T3131C", "A3136G", "T3165G", "C3223A", "T3230A", "A3268G", "C3275A", "A3276C", "A3292T", "A3293G", "T3368C", "T3399A", "T3433A", "A3447T", "A3448-", "T3449-", "T3450-", "A3451-", "C3500A", "G3556A", "T3567C", "T3602C", "T3644G", "T3668C", "G3685A", "A3694G", "G3715A", "T3757G", "C3778T", "A3787C", "C3826T", "T3844C", "G3859A", "C3908A", "A3910G", "A3952T", "G4081A", "G4092C", "G4109A", "C4129T", "C4132T", "T4147G", "G4151C", "G4183A", "A4213G", "A4228G", "A4306G", "A4439C", "A4475G", "C4534T", "A4555G", "G4652T", "T4655C", "T4701G", "C4721G", "C4725A", "T4742C", "T4799G", "C4827T", "A4863G", "G4888A", "A4901C", "A4911C", "T4973A", "A4974T", "C4975T", "T4985C", "A5004T", "A5024G", "T5027C", "T5047C", "A5054G", "G5082A", "G5123A", "G5131A", "G5143A", "G5179A", "A5213G", "A5215G", "T5221A", "C5228A", "A5248G", "A5302G", "T5333C", "T5354C", "A5355C", "A5370T", "C5371T", "G5382T", "T5424C", "G5448A", "T5451C", "T5483C", "G5496A", "C5548T", "C5567A", "C5569A", "C5578A", "G5599A", "C5602T", "C5611-", "A5612-", "A5613-", "G5644A", "G5652A", "C5659T", "T5679C", "G5775C", "T5801C", "G5805A", "G5842A", "T5857A", "T5859C", "T5870G", "T5871G", "A6025C", "C6097T", "C6139T", "C6145T", "A6158G", "C6163T", "G6171-", "A6173-", "A6174-", "A6176-", "A6177-", "T6178-", "G6179A", "-6180A", "A6185G", "T6187C", "C6189A", "-6195T", "-6196G", "-6200A", "-6201G", "-6202A", "-6203A", "-6204T", "-6205A", "-6206G", "-6210T", "-6211G", "A6215-", "A6219-", "T6231-", "G6232-", "A6273G", "G6274A", "T6285A", "A6288G", "A6303G", "G6323-", "A6324-", "T6325-", "A6326-", "A6327-", "A6329-", "A6330-", "A6332-", "A6333-", "T6334-", "A6335-", "A6338-", "G6339-", "C6340-", "G6368A", "T6385C", "C6396A", "C6397T", "A6415T", "G6463A", "A6484T", "A6581G", "A6584G", "A6616G", "C6667T", "T6676C", "T6719C", "C6729A", "A6730T", "A6732G", "A6781C", "A6810G", "T6826G", "T6828A", "A6854C", "T6860C", "G6910A", "G6940A", "A6947-", "G6948-", "A6950-", "C6951-", "A6952-", "T6953-", "G6954-", "G6955-", "A6959-", "A6960-", "A6962-", "T6964-", "A6965-", "C6966-", "C6984-", "A6985-", "A6986-", "A6987-", "T6988-", "A6989-", "T6991-", "A6992-", "A7000-", "A7001-", "T7003-", "A7007-", "C7045T", "A7046T", "T7081C", "C7089A", "A7094G", "A7101G", "A7126G", "T7130C", "G7132A", "A7133C", "C7134T", "A7135G", "G7145-", "G7146-", "T7147-", "A7148-", "A7149-", "T7150-", "A7151-", "A7152-", "A7154-", "A7155-", "T7156-", "A7157-", "A7158-", "T7159-", "G7162-", "A7163-", "A7164-", "T7165-", "A7198G", "A7225G", "A7238G", "G7239A", "A7241C", "C7250T", "T7255A", "C7256T", "G7276A", "A7307G", "A7322T", "G7357A", "T7400C", "T7604G", "C7605A", "T7622A", "C7623G", "T7624C", "C7625A", "G7658C", "G7689A", "T7691C", "A7693C", "C7699T", "A7706C", "G7712A", "A7713C", "A7721G", "A7729G", "A7747T", "C7754A", "A7764C", "G7791A", "A7800G", "A7801G", "G7862A", "C7931T", "A8011C", "A8093C", "A8098G", "T8113C", "G8114T", "A8119G", "G8141A", "A8152G", "A8188G", "A8219G", "A8227G", "G8242A", "G8254A", "T8257C", "G8279T", "A8284G", "A8288G", "A8294C", "G8323A", "C8336T", "G8349A", "G8350A", "A8354G", "A8367-", "G8368-", "T8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "T8375-", "G8376-", "G8377-", "A8378-", "A8405-", "A8406-", "G8407-", "A8408-", "A8409-", "C8410-", "T8411-", "C8415A", "G8447A", "C8451T", "A8533G", "G8540A", "A8573G", "G8590C", "C8609T", "C8652A", "C8687T", "T8789C", "A8793C", "G8807A", "T8813A", "T8829A", "T8832C", "T8835C", "G8864A", "G8873A", "T8887A", "A8904C", "G8905A", "A8906C", "A8931C", "A8952-", "A8953-", "A8954-", "G8955A"], "INT": ["L45M", "G106A", "V112I", "V126L", "N222H", "I234V"], "RT-p51": ["T107S", "Y121D", "D123N", "I142V", "K173R", "E177D", "I200M", "P272A", "C282L", "V293I", "P294A", "E312N", "Y346H", "M357R", "C379S", "Q394T", "E399D", "T400A", "V435E"], "RT-p66": ["T107S", "Y121D", "D123N", "I142V", "K173R", "E177D", "I200M", "P272A", "C282L", "V293I", "P294A", "E312N", "Y346H", "M357R", "C379S", "Q394T", "E399D", "T400A", "V435E", "L452-"], "gp120": ["S1R", "V2A", "L6G", "K57N", "N102D", "N108-", "T110-", "-113A", "-114N", "-115N", "-116V", "-117T", "-118R", "-119I", "-120G", "-121M", "K140R", "V144E", "K150R", "D157-", "N158-", "N159-", "N160-", "S162-", "A172T", "T181N", "I243V", "I244V", "T292N", "N293R", "K309D", "K319R", "F325Y", "K334Q", "S336P", "S365-", "W367-", "N369-", "S370-", "T371-", "N378-", "T380-", "M398L", "I414V", "K416S", "T427L", "G431-", "N433-", "N434-", "N435-", "S436-", "N437-", "R462E", "I463L"], "gp41": ["I2V", "S101D", "L108I", "D109E", "E119Q", "G129E", "I135L", "E137T", "Q151K", "K154T", "S163D", "N166R", "V187I", "L210F", "I264L", "V271L", "E280K", "T306A", "V326F", "I329V", "N331H"], "nef": ["G3N", "S9-", "I10-", "V11-", "G12-", "R22-", "T23-"], "p1": ["K10S"], "p17": ["R20Q", "S26K", "K28R", "A67S", "I68L", "K76R", "E90Q", "A95T", "A118-"], "p24": ["A14S", "I15L", "Q50T", "K199R", "P207A", "A208G"], "p6": ["F15L", "G16R", "I21T", "K33S", "L38I", "A39T", "K42R"], "p7": ["N5K", "K7Q", "P9Q", "R10K", "I12N", "I24T", "K34R"], "pro": ["N37D", "D60E", "V77I", "I93L"], "rev": ["L18I", "P28L", "I55L", "N82T", "N84D", "C89L", "T91A", "G98E", "I102V", "T114A"], "tat": ["E2D", "V36A", "P58S", "A64D", "H65N", "P68T"], "vif": ["K22N", "L39V", "D45E", "P47T", "R93G", "G101D", "Q105H", "I109L", "T130F", "N140Y", "I154T", "V166I", "G182D", "S186N"], "vpr": ["D7N", "L42I", "T84L", "T89L", "A93S"], "vpu": ["P3L", "L4V", "V5-", "V13I", "E56D", "V65A", "D78N", "V79I"]}, "labels": {"aa": "INT: L45M, G106A, V112I, V126L, N222H, I234V; RT-p51: T107S, Y121D, D123N, I142V, K173R, E177D, I200M, P272A, C282L, V293I, P294A, E312N, Y346H, M357R, C379S, Q394T, E399D, T400A, V435E; RT-p66: T107S, Y121D, D123N, I142V, K173R, E177D, I200M, P272A, C282L, V293I, P294A, E312N, Y346H, M357R, C379S, Q394T, E399D, T400A, V435E, L452-; gp120: S1R, V2A, L6G, K57N, N102D, N108-, T110-, -113A, -114N, -115N, -116V, -117T, -118R, -119I, -120G, -121M, K140R, V144E, K150R, D157-, N158-, N159-, N160-, S162-, A172T, T181N, I243V, I244V, T292N, N293R, K309D, K319R, F325Y, K334Q, S336P, S365-, W367-, N369-, S370-, T371-, N378-, T380-, M398L, I414V, K416S, T427L, G431-, N433-, N434-, N435-, S436-, N437-, R462E, I463L; gp41: I2V, S101D, L108I, D109E, E119Q, G129E, I135L, E137T, Q151K, K154T, S163D, N166R, V187I, L210F, I264L, V271L, E280K, T306A, V326F, I329V, N331H; nef: G3N, S9-, I10-, V11-, G12-, R22-, T23-; p1: K10S; p17: R20Q, S26K, K28R, A67S, I68L, K76R, E90Q, A95T, A118-; p24: A14S, I15L, Q50T, K199R, P207A, A208G; p6: F15L, G16R, I21T, K33S, L38I, A39T, K42R; p7: N5K, K7Q, P9Q, R10K, I12N, I24T, K34R; pro: N37D, D60E, V77I, I93L; rev: L18I, P28L, I55L, N82T, N84D, C89L, T91A, G98E, I102V, T114A; tat: E2D, V36A, P58S, A64D, H65N, P68T; vif: K22N, L39V, D45E, P47T, R93G, G101D, Q105H, I109L, T130F, N140Y, I154T, V166I, G182D, S186N; vpr: D7N, L42I, T84L, T89L, A93S; vpu: P3L, L4V, V5-, V13I, E56D, V65A, D78N, V79I"}}}]}, {"name": "D_NODE_0000048", "node_attrs": {"div": 0.09934, "clade_membership": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A424G", "G618A", "G755A", "C926T", "A1139G", "A1536C", "A1543G", "G1552A", "A1745C", "T1796C", "G1906A", "C2263T", "C2326T", "C2356T", "G2539A", "A2566G", "A2715G", "G3205A", "T3497C", "C3778T", "T3865A", "T4039C", "C4072T", "G4081A", "G4145A", "G4642A", "A4950C", "C4975T", "A5213C", "T5214C", "G5382T", "G5432A", "G5557A", "A5708G", "C5795A", "C5797T", "G5842A", "T5850C", "A5867C", "C6097T", "G6167A", "-6220G", "T6244G", "A6303G", "G6313A", "G6392A", "C6487T", "T6618C", "G6818A", "-6830A", "-6831A", "C6835A", "A6837C", "G6838A", "A6881G", "-6963G", "-6974A", "-6975A", "-6976T", "-6978A", "-6995G", "-6996A", "-7002A", "-7004A", "-7008C", "-7009A", "C7134A", "-7160A", "A7269G", "G7315A", "C7373A", "A7533G", "A7572G", "A7590C", "G7668A", "T7722C", "A7763C", "A7796T", "A7801C", "A7818G", "G8030A", "T8113C", "G8114T", "G8242A", "G8447A", "G8588A", "G8844A", "T8887A", "G9019T", "G9132A"], "INT": ["A124T"], "RT-p51": ["E207G"], "RT-p66": ["E207G", "S468P"], "gp120": ["K5Q", "-113N", "-114S", "V180I", "I255T", "G322R", "I343V", "K472R"], "gp41": ["L24M", "K77R", "K90R", "R122K", "K154Q", "T165S", "K172R", "A243T", "V271L"], "nef": ["M182K"], "p17": ["K30R", "I34L"], "p7": ["I24L", "K26R", "R29K"], "pro": ["M36I"], "rev": ["C89L"], "tat": ["E2D", "R19K", "G61S"], "vif": ["R19K", "K122Q"], "vpr": ["V37P", "A93S"], "vpu": ["K34R", "E60D", "S62E", "A63E", "V79I"]}, "labels": {"aa": "INT: A124T; RT-p51: E207G; RT-p66: E207G, S468P; gp120: K5Q, -113N, -114S, V180I, I255T, G322R, I343V, K472R; gp41: L24M, K77R, K90R, R122K, K154Q, T165S, K172R, A243T, V271L; nef: M182K; p17: K30R, I34L; p7: I24L, K26R, R29K; pro: M36I; rev: C89L; tat: E2D, R19K, G61S; vif: R19K, K122Q; vpr: V37P, A93S; vpu: K34R, E60D, S62E, A63E, V79I"}}, "children": [{"name": "KF716479", "node_attrs": {"div": 0.14662999999999998, "accession": "KF716479", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 2010.0}, "Strain_name": {"value": "DEMD10UG004"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A360C", "C402T", "C413G", "A435C", "A461G", "C471A", "T476C", "T485C", "A513G", "A523T", "G534T", "C540A", "C588A", "A604C", "A606G", "C641T", "A672G", "G677A", "C679T", "G683A", "G693A", "C722T", "A725G", "A779G", "C794T", "G818A", "A857G", "G908A", "A914G", "C978T", "G998A", "A1002G", "A1070G", "G1090A", "A1115G", "A1133C", "G1192A", "A1193G", "A1208G", "C1316T", "A1349G", "A1352C", "A1364G", "A1418G", "T1421C", "A1442G", "C1453T", "T1481G", "T1483A", "A1486C", "T1501G", "A1580G", "A1642G", "A1644T", "C1658G", "A1719T", "T1741C", "C1744A", "A1758C", "A1772G", "T1790C", "A1804G", "T1888C", "A1918G", "C1960T", "C1985A", "A1993C", "A2023G", "T2062C", "T2086A", "C2149T", "A2164G", "A2186G", "A2194C", "C2211G", "A2222G", "A2254G", "A2314G", "T2315C", "A2344G", "A2419G", "A2463G", "C2485T", "A2510G", "A2515G", "A2593G", "A2614G", "G2656A", "C2671T", "C2719T", "T2770C", "A2830G", "G2833A", "C2857A", "G2925A", "A2926G", "C2935T", "A2937G", "G2946A", "G2957A", "G2969A", "G2972A", "A2986G", "A2995G", "A3010G", "G3016A", "A3027G", "C3055T", "T3059G", "G3085A", "A3091G", "T3118C", "G3142A", "A3162G", "T3165A", "T3184C", "G3250A", "A3283G", "G3307C", "A3367G", "G3398A", "T3399C", "C3475T", "C3500T", "T3567C", "A3629C", "A3637C", "G3664A", "G3715A", "T3746C", "A3764C", "A3766G", "C3773T", "C3856T", "G3859A", "G3868A", "C3940T", "G3989A", "C4069A", "T4117C", "C4132A", "C4141T", "C4159T", "A4243G", "A4293G", "A4424G", "A4474C", "A4475C", "A4525G", "A4558C", "A4561G", "G4652A", "C4692A", "T4702G", "C4721A", "T4722A", "A4728C", "A4735G", "G4818A", "C4827T", "A4859G", "A4860G", "C4871T", "T4912C", "C5050A", "A5058C", "T5062C", "A5066G", "G5075A", "G5087A", "A5191G", "T5254C", "A5267G", "A5278G", "A5282G", "T5333C", "T5357G", "A5360G", "A5370C", "C5371T", "C5398A", "G5448A", "G5463T", "T5466C", "A5545C", "G5599A", "C5602T", "A5656T", "C5659T", "G5702A", "G5717A", "A5720G", "G5794A", "T5799C", "G5800A", "G5839A", "G5869A", "A5896G", "C5916A", "C5917A", "T5948G", "T5953C", "G5957C", "G5962A", "A6023T", "A6025C", "C6026T", "G6076A", "A6130T", "A6133G", "T6134C", "C6143T", "C6145A", "A6157G", "T6169A", "A6174C", "-6175G", "A6177G", "G6179A", "-6180A", "C6189G", "C6190T", "T6193C", "G6194A", "-6195G", "-6196T", "T6199C", "-6205G", "-6206A", "-6207G", "-6208G", "-6209A", "-6210G", "-6211G", "-6212G", "-6213T", "-6214T", "A6215T", "-6216A", "-6217G", "A6251G", "T6289A", "A6304C", "T6306A", "G6323A", "A6324G", "T6325G", "A6333C", "T6334-", "A6335-", "A6338-", "G6339-", "A6354G", "G6379A", "G6382A", "G6403A", "G6475A", "A6476C", "C6477A", "C6483G", "A6489C", "A6514G", "A6525G", "A6544G", "G6547A", "G6577A", "A6580G", "A6581G", "A6583G", "T6590A", "T6598C", "A6608C", "G6611T", "C6612T", "T6613G", "C6632T", "G6638A", "A6668T", "C6713G", "A6714C", "T6719A", "A6733G", "T6735C", "A6754G", "C6777T", "A6781C", "A6785G", "A6789C", "A6790C", "T6793C", "T6827C", "-6832C", "A6835G", "C6840A", "C6843T", "A6848G", "T6850C", "A6854G", "A6855G", "C6876T", "A6913G", "-6949T", "-6956C", "-6957A", "-6958G", "-6967T", "-6968C", "-6969T", "-6970A", "-6971T", "-6972T", "-6973A", "-6977A", "-6979A", "-6983A", "A6989T", "-6990A", "-6993C", "-6994A", "-6997A", "-6998G", "-6999A", "-7005A", "-7006A", "C7045T", "G7055A", "G7058A", "C7089A", "A7094C", "A7108C", "A7133G", "G7145A", "A7148G", "A7149T", "A7151G", "-7153A", "-7161G", "G7162T", "A7163C", "T7165G", "C7171T", "T7172G", "G7182T", "T7192G", "G7199A", "G7244A", "C7250A", "G7293A", "G7295C", "A7348G", "A7376G", "G7399A", "T7400G", "T7403C", "C7498T", "C7510T", "G7513C", "A7589G", "G7608C", "T7622A", "G7633C", "A7640G", "A7641G", "G7689A", "C7699T", "G7701A", "A7713T", "G7791A", "C7792T", "G7846A", "A7885T", "G7998A", "C8005A", "G8015C", "A8018G", "A8019G", "C8020A", "C8026A", "A8029G", "T8047C", "T8060A", "G8061T", "C8095A", "A8105T", "C8106T", "C8147A", "T8148G", "A8151G", "T8155C", "T8164C", "C8189G", "C8213T", "A8217G", "C8232T", "A8264G", "G8267T", "T8280G", "C8302T", "A8308C", "T8321G", "T8322C", "A8335T", "C8445A", "G8446A", "A8503C", "A8516G", "G8531A", "A8536G", "C8552T", "A8564G", "A8591G", "A8636T", "T8640A", "G8666T", "C8684T", "C8687T", "T8740C", "T8759C", "C8771T", "G8774A", "G8807A", "C8828T", "T8835C", "G8864A", "C8869A", "A8879G", "T8903C", "C8921T", "C8928A", "G8929A", "A8930G", "G8933A", "T8935A", "G8936A", "C8967T", "G8991A", "T9072G", "C9103T"], "INT": ["V72I", "S119R", "K173R", "I217V", "I234L"], "RT-p51": ["I31V", "T39R", "K43E", "D123G", "T139A", "R277K", "K281R", "R284K", "A288T", "V292I", "V293I", "K311R", "S322A", "K356R", "M357K", "E404D", "V435T"], "RT-p66": ["I31V", "T39R", "K43E", "D123G", "T139A", "R277K", "K281R", "R284K", "A288T", "V292I", "V293I", "K311R", "S322A", "K356R", "M357K", "E404D", "V435T", "L491S", "K512Q", "E514D"], "gp120": ["T21K", "S32A", "A35P", "K57Y", "D105K", "-106W", "-107T", "N108S", "-109N", "N111T", "T112S", "-115T", "I133V", "H145Q", "K150S", "L151H", "D157R", "N160T", "S162-", "N167S", "T208Q", "P210R", "K212T", "K224R", "I242M", "I243V", "S246T", "N252H", "A253L", "L260F", "E262K", "N272Y", "Q287A", "L289I", "N293K", "I294T", "A308V", "K309D", "N311D", "K312T", "F325L", "N327-", "K328N", "T329K", "I331K", "K334G", "P341L", "-366T", "-368Q", "N369E", "S370N", "T371S", "-372T", "-373L", "-374L", "-375N", "-376K", "-377T", "-379Y", "-381E", "-382E", "-383N", "-384K", "G401R", "V402I", "I414L", "T427E", "G431S", "-432V", "N433E", "N437Q", "F440V", "G443V", "D446E", "D449N", "E464K", "L466I", "R480K", "E481Q"], "gp41": ["T25A", "L33V", "N96A", "S102T", "S107T", "D109E", "E110D", "N113G", "G129E", "S133N", "E137V", "S163N", "G232D", "V238L", "N239G", "F241L", "C253I", "T268L", "L282S", "K283R", "L296V", "D305G", "A310V", "I321V", "V322L", "V326G", "L340A", "L344F"], "nef": ["R35K", "D54A", "E65G", "E98D", "L100I", "E108D", "I133T", "P176Q", "L198Q", "F202Y"], "p1": ["K4R", "I5F", "H9Q"], "p17": ["S9R", "P23S", "S26R", "L46I", "I60V", "Q63L", "A67S", "Q69K", "L85I", "E90A", "R91G", "A95T", "K113E", "A115V", "A120T"], "p2": ["A10V"], "p24": ["S120N", "R154K"], "p6": ["S14C", "I21T", "T22N", "K27Q", "K42R"], "p7": ["N5K", "F6Y", "K7T", "I12S"], "pro": ["L63T", "E65D"], "rev": ["E10D", "H53N", "G56A", "E57G", "L60I", "S61D", "S67P", "V71D", "L83I", "N86I", "P100Q", "S103P", "S106P", "T114S"], "tat": ["L8I", "K29N"], "vif": ["Q36K", "L39W", "D45E", "C46S", "N48H", "K50R", "E78K", "R92G", "I109T", "T130I", "T155K", "K158Q", "I159T"], "vpr": ["T55A", "I60V", "T84M", "T89L"], "vpu": ["I17L", "R32K", "R37K", "K38R", "L61E", "V65S", "E66K", "M67F", "G68M", "-70E", "-71M", "-72G", "D78N"]}, "labels": {"aa": "INT: V72I, S119R, K173R, I217V, I234L; RT-p51: I31V, T39R, K43E, D123G, T139A, R277K, K281R, R284K, A288T, V292I, V293I, K311R, S322A, K356R, M357K, E404D, V435T; RT-p66: I31V, T39R, K43E, D123G, T139A, R277K, K281R, R284K, A288T, V292I, V293I, K311R, S322A, K356R, M357K, E404D, V435T, L491S, K512Q, E514D; gp120: T21K, S32A, A35P, K57Y, D105K, -106W, -107T, N108S, -109N, N111T, T112S, -115T, I133V, H145Q, K150S, L151H, D157R, N160T, S162-, N167S, T208Q, P210R, K212T, K224R, I242M, I243V, S246T, N252H, A253L, L260F, E262K, N272Y, Q287A, L289I, N293K, I294T, A308V, K309D, N311D, K312T, F325L, N327-, K328N, T329K, I331K, K334G, P341L, -366T, -368Q, N369E, S370N, T371S, -372T, -373L, -374L, -375N, -376K, -377T, -379Y, -381E, -382E, -383N, -384K, G401R, V402I, I414L, T427E, G431S, -432V, N433E, N437Q, F440V, G443V, D446E, D449N, E464K, L466I, R480K, E481Q; gp41: T25A, L33V, N96A, S102T, S107T, D109E, E110D, N113G, G129E, S133N, E137V, S163N, G232D, V238L, N239G, F241L, C253I, T268L, L282S, K283R, L296V, D305G, A310V, I321V, V322L, V326G, L340A, L344F; nef: R35K, D54A, E65G, E98D, L100I, E108D, I133T, P176Q, L198Q, F202Y; p1: K4R, I5F, H9Q; p17: S9R, P23S, S26R, L46I, I60V, Q63L, A67S, Q69K, L85I, E90A, R91G, A95T, K113E, A115V, A120T; p2: A10V; p24: S120N, R154K; p6: S14C, I21T, T22N, K27Q, K42R; p7: N5K, F6Y, K7T, I12S; pro: L63T, E65D; rev: E10D, H53N, G56A, E57G, L60I, S61D, S67P, V71D, L83I, N86I, P100Q, S103P, S106P, T114S; tat: L8I, K29N; vif: Q36K, L39W, D45E, C46S, N48H, K50R, E78K, R92G, I109T, T130I, T155K, K158Q, I159T; vpr: T55A, I60V, T84M, T89L; vpu: I17L, R32K, R37K, K38R, L61E, V65S, E66K, M67F, G68M, -70E, -71M, -72G, D78N"}}}, {"name": "AF484511", "node_attrs": {"div": 0.13265, "accession": "AF484511", "clade_membership": {"value": "D"}, "country": {"value": "UG"}, "date": {"value": 1998.0}, "Strain_name": {"value": "98UG57140"}, "LANL_subtype": {"value": "D"}}, "branch_attrs": {"mutations": {"nuc": ["A380T", "A387G", "A388G", "A435T", "A516C", "A537G", "A571T", "G607A", "C619A", "A620G", "C623T", "T636C", "A643G", "A653G", "C684A", "A685C", "A692G", "A702G", "T777C", "A881G", "T1003A", "G1078C", "A1089G", "C1103T", "A1109G", "A1142G", "T1263A", "T1271G", "T1322C", "C1403A", "G1430A", "A1486G", "G1495A", "T1505C", "A1588G", "C1775A", "G1781A", "G1794A", "A1867G", "A1937G", "A1963G", "C1986A", "A1987G", "A2002G", "A2012G", "T2206C", "A2215G", "A2216G", "G2224A", "G2241A", "G2392A", "A2473G", "A2518G", "A2524G", "A2545G", "A2570G", "C2635T", "T2653C", "A2727C", "G2728A", "A2829C", "A2845C", "A2881G", "T2890C", "A2929G", "C2941T", "G2980A", "G2984A", "A3130G", "A3164T", "A3226C", "A3292T", "C3294T", "G3334A", "C3346T", "A3604G", "G3631A", "A3886G", "G3907A", "A3913G", "C3994T", "C4149T", "A4219G", "T4234C", "A4243T", "T4247C", "C4426T", "A4437G", "T4498G", "G4549A", "G4573A", "A4622G", "A4653G", "C4665T", "A4684G", "C4726T", "A4755G", "A4820C", "C4841T", "A4974T", "T4991C", "T5027C", "C5038A", "A5049G", "A5055G", "A5057G", "A5159G", "A5186C", "G5225A", "G5257A", "T5260C", "C5306T", "C5314A", "A5336C", "C5393T", "T5415C", "A5422T", "A5444C", "G5482T", "T5484G", "C5548A", "A5581C", "A5594G", "C5614T", "T5616C", "G5652A", "C5653T", "C5659A", "A5700G", "T5728A", "G5747T", "G5781C", "A5784G", "A5787T", "T5788A", "T5789G", "T5791G", "C5792A", "A5793G", "T5799A", "G5800T", "T5826C", "C5827G", "G5845A", "A5861G", "G5865A", "T5887C", "T5920C", "A5954G", "A5956G", "A6015G", "A6043G", "A6121G", "C6139T", "C6151T", "C6153T", "A6158G", "C6165A", "T6170A", "G6171C", "G6172A", "-6175T", "-6180C", "A6182T", "A6185T", "C6186A", "A6188G", "C6189T", "-6195C", "-6196C", "-6200G", "-6201T", "-6202C", "-6216C", "-6217T", "-6221G", "-6222A", "-6223A", "-6224A", "-6225C", "-6226A", "-6227G", "-6228A", "-6229A", "-6230A", "G6260-", "A6261-", "A6262-", "G6263-", "T6264-", "A6265-", "A6278C", "C6281A", "C6293T", "T6299G", "A6318C", "T6328G", "-6336A", "-6337A", "C6340T", "A6436G", "T6457C", "T6592C", "A6647C", "A6654C", "C6660T", "A6695C", "A6714G", "C6721A", "A6723T", "A6733C", "A6737G", "A6773G", "C6777A", "G6779A", "A6820G", "A6822G", "-6832T", "A6833G", "A6834G", "A6836T", "A6847G", "A6884G", "C6885A", "A6887C", "C6888A", "A6889C", "C6938T", "A6947-", "G6948-", "A6950-", "C6951-", "A6952-", "T6953-", "G6954-", "G6955-", "A6965G", "C6966T", "-6967A", "-6968T", "-6969G", "-6970G", "-6971A", "-6972G", "-6973C", "-6977G", "-6979T", "-6980A", "-6981C", "-6982A", "-6983T", "A6987G", "-6990G", "-6993A", "-6994T", "-6997T", "-6998A", "-6999C", "-7005G", "-7006T", "A7046C", "G7056A", "T7075C", "A7102G", "A7133C", "A7138G", "T7147G", "A7152G", "-7153C", "A7155C", "T7156G", "-7161C", "G7162A", "C7170T", "C7222T", "A7225G", "A7241C", "C7256A", "C7264T", "A7398T", "A7589T", "G7630T", "G7631A", "G7660A", "C7678G", "T7691C", "A7711G", "A7734G", "C7748T", "T7757C", "A7765G", "C7825T", "G7868A", "C7874T", "T7876C", "A7885G", "G7915A", "G7918A", "T7932G", "T8016A", "C8028T", "A8036T", "C8080A", "A8128G", "C8149A", "A8152G", "T8159G", "C8167T", "G8170A", "G8173A", "T8182A", "G8216A", "A8297G", "C8304G", "C8306A", "G8323A", "G8330T", "C8331T", "T8332G", "G8349A", "A8426G", "C8440T", "T8483C", "G8487A", "A8533G", "T8558C", "A8567G", "C8585T", "T8595C", "C8652A", "A8653G", "C8699A", "A8717G", "C8720T", "A8739G", "T8789C", "C8791A", "A8793C", "G8808A", "A8824C", "C8868T", "G8905A", "T8914A", "A8918G", "A8931G", "A8947T", "C8992A", "T8993-", "G9007A", "T9097G", "G9137A"], "INT": ["A125V", "K156N", "Q221R", "S283G"], "RT-p51": ["M41V", "R49K", "I159V", "K211T", "K245T", "E250D", "E297K", "M357L", "Q377H", "E399D", "T400I"], "RT-p66": ["M41V", "R49K", "I159V", "K211T", "K245T", "E250D", "E297K", "M357L", "Q377H", "E399D", "T400I"], "gp120": ["T3A", "G4E", "K34E", "Q54R", "T100I", "N102D", "T104N", "D105-", "N108-", "T110-", "-115Y", "-116V", "-117N", "-118A", "-119T", "-120V", "-121T", "-122E", "-123E", "-124T", "-125E", "-126M", "E136-", "V137-", "K142Q", "Q143K", "L147F", "Y149D", "K150R", "Q155P", "N158K", "-161K", "T265P", "N267T", "T269I", "I281L", "Q287R", "Y290F", "I295V", "R307G", "A308E", "D323G", "-326N", "N327G", "K328S", "I331M", "T344E", "T345H", "S365-", "W367-", "T371V", "-372W", "-373S", "-374T", "-375S", "-376S", "-377S", "-379D", "-381S", "-382S", "-383S", "-384S", "M398L", "G401E", "E412A", "T427Q", "-432N", "N434D", "S436T", "T439I", "I463L", "L468I"], "gp41": ["Q32L", "N96S", "E110K", "D125E", "K144R", "A189T", "L191F", "L210R", "V238E", "S242L", "I245F", "W286G", "F304L", "D305N", "I332V", "T334R", "A343L"], "nef": ["G3S", "A33V", "A49T", "E64N", "Q104R", "I133V", "P150Q", "K151Q", "D156N", "N161T", "P176S", "R188K", "F191Y", "K196R", "I197V"], "p17": ["E15D", "K18G", "M61L", "I68V", "Y79F", "R91K", "A95K", "K103R", "Q117T", "R123G"], "p24": ["S16P", "V91N", "G116A", "S120G", "S178T", "D180E"], "p6": ["D32E", "A39T"], "p7": ["K7R", "R10K", "K41R"], "pro": ["I47V", "L63Q", "I72V"], "rev": ["D11E", "S61N", "Y63F", "L78I", "T94A", "Q101K", "I102V", "V104G", "P107S", "A108T", "V109I", "S112T"], "tat": ["P6L", "S16C", "N23T", "V36L", "P58T", "I69L", "S75A"], "vif": ["S23G", "H27Y", "K33R", "P47L", "I57V", "E78D", "T130F", "T151K", "T155A", "K157E"], "vpr": ["T19A", "S28R", "G41S", "Q77H", "T84I"], "vpu": ["P3S", "L18I", "W41R", "R47I", "E58D", "L61R", "V65L", "H74D", "D80N"]}, "labels": {"aa": "INT: A125V, K156N, Q221R, S283G; RT-p51: M41V, R49K, I159V, K211T, K245T, E250D, E297K, M357L, Q377H, E399D, T400I; RT-p66: M41V, R49K, I159V, K211T, K245T, E250D, E297K, M357L, Q377H, E399D, T400I; gp120: T3A, G4E, K34E, Q54R, T100I, N102D, T104N, D105-, N108-, T110-, -115Y, -116V, -117N, -118A, -119T, -120V, -121T, -122E, -123E, -124T, -125E, -126M, E136-, V137-, K142Q, Q143K, L147F, Y149D, K150R, Q155P, N158K, -161K, T265P, N267T, T269I, I281L, Q287R, Y290F, I295V, R307G, A308E, D323G, -326N, N327G, K328S, I331M, T344E, T345H, S365-, W367-, T371V, -372W, -373S, -374T, -375S, -376S, -377S, -379D, -381S, -382S, -383S, -384S, M398L, G401E, E412A, T427Q, -432N, N434D, S436T, T439I, I463L, L468I; gp41: Q32L, N96S, E110K, D125E, K144R, A189T, L191F, L210R, V238E, S242L, I245F, W286G, F304L, D305N, I332V, T334R, A343L; nef: G3S, A33V, A49T, E64N, Q104R, I133V, P150Q, K151Q, D156N, N161T, P176S, R188K, F191Y, K196R, I197V; p17: E15D, K18G, M61L, I68V, Y79F, R91K, A95K, K103R, Q117T, R123G; p24: S16P, V91N, G116A, S120G, S178T, D180E; p6: D32E, A39T; p7: K7R, R10K, K41R; pro: I47V, L63Q, I72V; rev: D11E, S61N, Y63F, L78I, T94A, Q101K, I102V, V104G, P107S, A108T, V109I, S112T; tat: P6L, S16C, N23T, V36L, P58T, I69L, S75A; vif: S23G, H27Y, K33R, P47L, I57V, E78D, T130F, T151K, T155A, K157E; vpr: T19A, S28R, G41S, Q77H, T84I; vpu: P3S, L18I, W41R, R47I, E58D, L61R, V65L, H74D, D80N"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000061", "node_attrs": {"div": 0.02136, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C153T", "-167G", "C507A", "G534T", "T536C", "A585G", "C586T", "A704-", "A749T", "G791A", "T1004C", "A1028T", "G1078C", "A1101G", "G1139A", "T1271A", "G1474A", "T1481C", "C1492A", "-1503G", "G1562A", "A1709G", "T1828A", "G1835A", "A1841G", "A1903C", "C2353T", "C2356T", "G2459A", "A2461G", "C2464T", "T2476C", "A2500C", "G2518A", "C2615A", "A2665G", "G2728A", "C2740T", "A2788G", "C2831T", "A2842G", "A2974G", "A2985C", "A2995G", "A3043G", "A3154G", "A3387C", "C3545T", "G3667A", "A3674C", "A3775G", "A3952G", "C4015T", "A4069C", "T4075C", "G4109A", "A4150G", "A4183G", "A4525C", "A4735G", "G4765A", "G4774A", "G4782A", "T4969G", "A4988T", "A5336T", "G5448A", "A5471T", "T5491A", "G5566A", "A5581G", "C5602T", "A5612C", "A5619G", "C5679T", "T5687A", "G5699A", "A5707G", "G5725A", "C5727T", "A5734T", "T5735A", "T5739A", "A5790G", "-5791G", "-5799T", "T5801G", "-5809G", "-5810G", "A5825C", "C5827T", "G5830A", "C5831T", "T5836G", "G5842A", "G5845A", "G5856A", "C5958A", "G6088A", "-6189C", "-6194A", "-6196T", "-6200A", "-6202C", "-6206A", "-6208C", "-6210T", "-6211G", "-6218G", "-6223A", "-6225G", "-6226G", "C6241T", "G6323A", "G6336A", "G6368A", "G6403T", "G6463A", "A6475G", "A6490G", "G6526A", "T6562C", "G6577T", "C6607T", "C6613A", "C6752A", "A6754G", "T6766C", "G6779C", "C6797G", "A6814G", "G6819A", "T6829C", "-6835T", "A6889G", "A6936G", "G6948-", "T6949-", "A6950-", "C6951-", "T6953-", "G6954-", "-7003T", "-7009T", "A7015T", "C7024T", "A7065G", "A7089C", "T7107A", "A7108C", "A7123T", "G7276A", "A7280C", "G7289A", "C7313A", "G7450A", "A7471G", "G7668A", "A7672G", "T7692C", "T7852C", "T7921A", "A7938G", "A8006G", "T8008G", "G8079A", "A8119C", "C8232T", "G8254A", "A8266T", "G8267T", "A8269G", "T8279G", "G8348T", "T8411C", "A8432G", "A8441G", "C8471T", "-8490G", "G8506T", "T8507G", "T8597C", "T8636A", "A8793G", "G8805A", "A8829T", "T8843C", "T8847A", "G8873C", "T8887A", "C8928A", "C8934A", "T8935G", "G8936A", "C9108T"], "INT": ["V112T", "A124T"], "RT-p51": ["E122K", "T173A", "E297A", "K431T"], "RT-p66": ["E122K", "E297A", "K431T"], "gp120": ["S1N", "T35K", "-105D", "N113-", "-122E", "-124G", "D157N", "E183D", "E241D", "Q300K", "E309Q", "Q315E", "K319-", "R322K", "K323-", "G351R", "K361G", "W367-", "K404R", "N437T", "K472R", "R476Q", "E479K"], "gp41": ["L4M", "R122K", "I130T", "N212S", "I235V", "R259H", "L273R", "L274G", "A310V", "V322L", "C326G"], "nef": ["C55L", "D98E", "K151E", "E155K", "I168M", "C169S", "E177D", "L198R"], "p17": ["A67S", "T84V"], "p24": ["G116A", "I124V"], "p6": ["L50*"], "p7": ["R3K", "G4S"], "pro": ["V13I", "I15V", "E35D"], "rev": ["I18Y", "H53R", "S54A", "L83I"], "tat": ["Y32F", "L39I", "D64I", "I69V", "T77A"], "vif": ["K50R", "G60E", "I128R", "E134N"], "vpr": ["Q77H"], "vpu": ["Q2S", "F27Y", "R31K", "D40N", "I43Y", "D44E", "L61A", "V65A", "E66A", "M67L", "-68G", "-70E", "-72G", "-73P", "-74F", "-75I", "W77G", "V79I", "D80N"]}, "labels": {"aa": "INT: V112T, A124T; RT-p51: E122K, T173A, E297A, K431T; RT-p66: E122K, E297A, K431T; gp120: S1N, T35K, -105D, N113-, -122E, -124G, D157N, E183D, E241D, Q300K, E309Q, Q315E, K319-, R322K, K323-, G351R, K361G, W367-, K404R, N437T, K472R, R476Q, E479K; gp41: L4M, R122K, I130T, N212S, I235V, R259H, L273R, L274G, A310V, V322L, C326G; nef: C55L, D98E, K151E, E155K, I168M, C169S, E177D, L198R; p17: A67S, T84V; p24: G116A, I124V; p6: L50*; p7: R3K, G4S; pro: V13I, I15V, E35D; rev: I18Y, H53R, S54A, L83I; tat: Y32F, L39I, D64I, I69V, T77A; vif: K50R, G60E, I128R, E134N; vpr: Q77H; vpu: Q2S, F27Y, R31K, D40N, I43Y, D44E, L61A, V65A, E66A, M67L, -68G, -70E, -72G, -73P, -74F, -75I, W77G, V79I, D80N"}}, "children": [{"name": "results/subtype_trees/F2.nwk", "node_attrs": {"div": 0.05266, "clade_membership": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["C96T", "T200C", "A224G", "G278A", "A404G", "A425G", "A428G", "A491G", "G495A", "G524A", "A557G", "C583T", "C587T", "G595A", "G615A", "A619G", "A645C", "G648C", "A669C", "G683A", "C700A", "A705-", "A706-", "C707-", "A708-", "C710-", "G712-", "A715-", "C722T", "G740A", "C773T", "G998A", "C1013T", "G1192A", "G1419A", "-1452G", "G1476A", "C1535T", "C1541T", "A1567G", "G1588A", "A1743-", "C1744-", "C1745-", "T1754C", "T1783A", "G1794A", "C1826T", "A1849G", "G1852A", "A1857G", "A1861G", "A1879G", "C1903T", "A2032G", "A2038G", "T2195C", "T2206C", "A2215G", "T2251A", "T2383C", "T2464G", "A2560G", "A2612G", "A2692G", "C2749T", "T2770C", "C2822G", "G2843A", "A2844G", "A2919G", "A2929C", "C2968T", "A2969G", "C3067T", "A3097G", "T3131C", "T3132A", "C3207T", "C3252T", "A3280G", "T3559C", "A3622C", "T3652C", "C3712T", "A3781G", "T3889C", "T3943C", "G3989A", "G4145A", "C4149T", "A4303G", "A4455T", "G4539A", "G4573A", "A4737G", "A4785G", "C4786T", "A4790C", "G4802A", "C4820T", "G4835A", "G4861A", "A4865G", "C4871G", "C4890T", "G4986A", "T5018C", "A5051T", "A5057G", "A5069G", "T5084C", "C5095T", "G5114C", "A5186C", "C5213G", "C5214A", "A5215G", "A5290G", "T5293A", "G5308A", "T5314C", "G5363A", "G5370A", "C5371T", "T5382A", "C5383A", "C5384T", "G5403T", "G5437C", "C5445T", "G5482C", "T5484G", "T5492C", "C5495G", "A5499G", "C5563A", "C5567T", "T5568A", "C5630T", "A5643T", "G5668A", "G5707T", "G5717A", "A5720G", "G5784A", "-5806G", "A5866T", "G5893A", "C5998T", "A6076C", "-6167G", "-6170G", "-6171T", "-6172T", "-6180C", "C6190T", "-6198G", "-6199T", "-6212A", "-6213T", "-6214A", "-6221G", "-6222A", "A6262G", "T6285A", "A6333G", "-6340A", "A6394G", "A6430T", "C6483T", "G6547A", "G6638A", "A6647G", "-6689A", "G6771A", "A6780T", "A6781G", "A6788G", "A6790C", "C6800A", "A6809G", "A6812G", "A6817C", "G6821A", "T6849C", "C6862A", "T6928C", "T6932A", "-6986A", "-6987A", "-6988T", "-6989A", "-7001A", "C7018T", "G7054A", "G7055A", "A7090T", "C7096A", "A7100C", "C7101A", "A7102G", "T7117C", "-7162G", "T7172C", "A7186G", "T7217C", "A7219G", "A7231G", "A7315G", "G7440A", "A7504G", "G7508A", "T7537C", "C7603T", "G7627T", "G7633A", "T7642C", "G7658C", "G7702T", "T7715G", "G7717A", "A7744G", "C7770A", "A7771C", "A7791C", "C7792T", "T7796A", "C7805T", "T7813C", "C7852A", "G7883A", "G7992A", "G7995A", "A8019G", "T8037C", "A8076G", "C8095A", "C8120-", "T8121-", "T8122-", "C8123G", "T8124G", "C8168G", "T8169C", "T8210C", "G8242A", "G8255A", "T8257C", "C8320T", "C8415G", "A8486T", "C8488G", "A8489G", "C8499G", "G8516A", "A8522G", "C8543T", "C8640T", "G8666A", "C8831T", "A8851T", "T8867C", "A8876G", "G8935A", "C8978A", "G9007A", "A9009-", "G9015-", "G9016-", "C9018-", "T9019-", "T9029-", "A9095-", "G9132A", "G9177A"], "INT": ["V72I", "A125V", "Y227F", "S255N"], "RT-p51": ["D123E", "P243A", "D250S", "K275R", "Q278H", "I292V", "F346H", "M357R", "A371V", "T386V"], "RT-p66": ["D123E", "T173A", "P243A", "D250S", "K275R", "Q278H", "I292V", "F346H", "M357R", "A371V", "T386V", "Q509H", "K527Q"], "gp120": ["E74D", "-106V", "-109T", "-111N", "-112T", "V144E", "N159S", "P210L", "E262R", "H302Y", "S306N", "Q309L", "K312D", "Q316K", "V317I", "K320E", "H324-", "F325-", "N327-", "S365T", "-378N", "N414K", "T416Q", "F440L"], "gp41": ["N42S", "R46K", "V69I", "E119Q", "S138A", "A156D", "D163S", "S165T", "V194I", "F206L", "R231K", "N239S", "N251S", "H258R", "E272D", "G275L", "R276K", "R277G", "L289A", "V318I"], "nef": ["P25A", "A49R", "P53A", "Q170L"], "p17": ["A54T", "A83V", "C87Y", "V94I", "K95R", "I104L", "E105Q", "K112Q", "T122K", "N124-", "S125-", "S126-", "Q127-"], "p24": ["R154K", "S225G", "V230I"], "p7": ["K34R", "R41K"], "pro": ["K20R", "H69Q"], "rev": ["T91Q", "S92G", "G93T", "T94E", "Q95R", "P107H"], "tat": ["P3I", "E9D", "A21P", "V36L", "I39T", "Q63K"], "vif": ["I51V", "A62D", "R63S", "T67V", "R92K", "S95R", "T170V", "K176N"], "vpr": ["A4P", "N28H", "P37E", "A89I", "S93N"], "vpu": ["A8V", "L12F", "V21I", "-71V"]}, "labels": {"aa": "INT: V72I, A125V, Y227F, S255N; RT-p51: D123E, P243A, D250S, K275R, Q278H, I292V, F346H, M357R, A371V, T386V; RT-p66: D123E, T173A, P243A, D250S, K275R, Q278H, I292V, F346H, M357R, A371V, T386V, Q509H, K527Q; gp120: E74D, -106V, -109T, -111N, -112T, V144E, N159S, P210L, E262R, H302Y, S306N, Q309L, K312D, Q316K, V317I, K320E, H324-, F325-, N327-, S365T, -378N, N414K, T416Q, F440L; gp41: N42S, R46K, V69I, E119Q, S138A, A156D, D163S, S165T, V194I, F206L, R231K, N239S, N251S, H258R, E272D, G275L, R276K, R277G, L289A, V318I; nef: P25A, A49R, P53A, Q170L; p17: A54T, A83V, C87Y, V94I, K95R, I104L, E105Q, K112Q, T122K, N124-, S125-, S126-, Q127-; p24: R154K, S225G, V230I; p7: K34R, R41K; pro: K20R, H69Q; rev: T91Q, S92G, G93T, T94E, Q95R, P107H; tat: P3I, E9D, A21P, V36L, I39T, Q63K; vif: I51V, A62D, R63S, T67V, R92K, S95R, T170V, K176N; vpr: A4P, N28H, P37E, A89I, S93N; vpu: A8V, L12F, V21I, -71V", "clade": "F2"}}, "children": [{"name": "F2_NODE_0000001", "node_attrs": {"div": 0.05687, "clade_membership": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["G743A", "C926T", "G1232A", "G1268A", "-1455G", "-1456C", "C1478T", "A1587C", "A1786T", "C1825A", "G2902A", "A3302G", "T3829C", "A5122G", "T5147C", "C5227T", "T5228C", "A5335G", "C5584T", "C5614T", "G5729A", "G5737C", "A5805G", "G5861A", "C5878T", "A6045G", "C6208A", "-6209A", "A6251G", "G6274A", "A6275C", "C6499T", "A6576G", "T6577C", "G6693A", "-6697G", "A6703-", "A6714G", "C6824A", "C6826A", "T6827A", "-6830A", "-6831A", "A6844T", "-6978A", "-6985A", "-6990A", "-6999A", "G7132A", "G7145A", "G7146A", "A7152C", "A7508C", "A7590C", "T7622A", "A7799C", "T7913G", "T8155C", "T8164C", "A8400C", "A8584T", "C9023-", "A9027-", "A9034-", "G9035-", "A9057-", "A9059-", "A9061-", "A9062-", "A9065-", "A9082-", "A9099-", "A9101-"], "gp120": ["A3T", "N64S", "I133V", "K141Q", "N160S"], "gp41": ["I69L", "N166Q", "L204V"], "p6": ["-26L", "P49Q"], "p7": ["K41Q"], "rev": ["S103P", "S106P"], "tat": ["P70S"], "vpr": ["Y15H", "H77R"]}, "labels": {"aa": "gp120: A3T, N64S, I133V, K141Q, N160S; gp41: I69L, N166Q, L204V; p6: -26L, P49Q; p7: K41Q; rev: S103P, S106P; tat: P70S; vpr: Y15H, H77R"}}, "children": [{"name": "MK086130", "node_attrs": {"div": 0.10655, "accession": "MK086130", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "LB002_1"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["G384T", "A385G", "A386C", "A387T", "A388C", "A389T", "T391A", "G404A", "G407A", "C456T", "A470G", "A513T", "A527G", "C537A", "G547C", "A548C", "G557A", "T575C", "G579A", "G607A", "G614T", "T636G", "T641C", "A665G", "A673G", "T728C", "C747T", "T749G", "G771A", "C772A", "T789C", "A810G", "T824C", "A869G", "A878C", "C879G", "A880G", "A903T", "A968G", "T992G", "G1019A", "G1077A", "A1112G", "A1115C", "G1159A", "T1181A", "A1205G", "G1206A", "A1208C", "A1271T", "A1289T", "T1296C", "G1313A", "T1322C", "T1358A", "C1360A", "A1361T", "A1370C", "A1419G", "C1440A", "A1441G", "A1449G", "A1450G", "T1502A", "G1567A", "C1571T", "A1579G", "A1618G", "G1648T", "A1656C", "G1664A", "A1670C", "G1709A", "A1715G", "-1746A", "-1747C", "-1748T", "C1756T", "G1769A", "A1770C", "G1784A", "T1826G", "C1831T", "C1853A", "C1865A", "G1968A", "C1986T", "G2038A", "C2044T", "T2062C", "A2075C", "T2080G", "G2215A", "A2350C", "G2428A", "T2494C", "A2498G", "A2519G", "T2521C", "G2560C", "G2583A", "C2584T", "G2624A", "G2675C", "G2693A", "G2725A", "A2727G", "A2743C", "G2822A", "G2876C", "G2914A", "G2926C", "G2946A", "G2951A", "T3002C", "C3023T", "G3035A", "T3067A", "G3127A", "C3128T", "A3162G", "G3168A", "A3192G", "A3249G", "G3250A", "A3258G", "C3294T", "G3391T", "T3399C", "T3497A", "T3544G", "A3654C", "C3665A", "C3756G", "G3787A", "A3802G", "T3865G", "G3952A", "A3982G", "A3985G", "C3995A", "G3997A", "C4021A", "C4042T", "A4076T", "C4079T", "C4181A", "G4237A", "A4264G", "T4276G", "T4288C", "A4306G", "G4354A", "A4399G", "T4412C", "C4525A", "C4534T", "A4564G", "C4569T", "A4664G", "G4677A", "A4686C", "T4702C", "G4708A", "C4728A", "G4735A", "T4738C", "C4757T", "G4766T", "G4770T", "A4774G", "G4818A", "T4820G", "A4835C", "A4854T", "G4864A", "G4888A", "T4910C", "C5034T", "G5069A", "G5086A", "G5087A", "G5140A", "A5200G", "C5221T", "T5224G", "C5237T", "T5245C", "C5306T", "A5355T", "T5356A", "C5398T", "T5415C", "T5436C", "A5448C", "T5451C", "A5461C", "A5462G", "T5475C", "C5482T", "A5493T", "G5496T", "T5515C", "A5548G", "C5569T", "A5587G", "A5594G", "G5599T", "T5600C", "C5612T", "T5617G", "T5618A", "G5619A", "-5620A", "T5621A", "A5622T", "G5626T", "C5651T", "A5668G", "T5707A", "A5746G", "G5747C", "A5751G", "T5778C", "C5834T", "G5839A", "A5856G", "C5869A", "T5944C", "A5956C", "A5957C", "A5958C", "G5962A", "C5974T", "C6026-", "T6027-", "G6028-", "G6029C", "A6030T", "A6038T", "C6110G", "T6134A", "A6158G", "C6160A", "A6164C", "C6165A", "T6171C", "T6172G", "C6180T", "T6181A", "T6184A", "A6185G", "A6186C", "T6187A", "C6189A", "T6190C", "A6192G", "-6195C", "T6199G", "C6202-", "-6207G", "-6215C", "-6216C", "-6217A", "-6220G", "G6227A", "A6229C", "A6232G", "A6259T", "A6266C", "T6295C", "A6304G", "G6311A", "G6314A", "T6322A", "A6323-", "A6327C", "T6331G", "A6336C", "T6343C", "A6354G", "A6362T", "A6407G", "T6409C", "T6418C", "A6463G", "A6465G", "C6482T", "A6489T", "A6500G", "T6511C", "G6532A", "A6595G", "G6605A", "A6638G", "T6641A", "A6648G", "A6664G", "C6667A", "G6681T", "A6686G", "A6695T", "G6716A", "A6718T", "A6752C", "G6754A", "A6771G", "G6773A", "A6776G", "C6777A", "T6780A", "G6788A", "C6790A", "A6799T", "A6800C", "A6801G", "G6806C", "C6807G", "G6809A", "C6817T", "T6828G", "-6832C", "-6833T", "-6834A", "A6836C", "T6838G", "A6839G", "A6840G", "C6843A", "A6845G", "C6849G", "A6854G", "A6855C", "T6860C", "C6861A", "A6862T", "T6876C", "A6886C", "C6888T", "C6925T", "G6935A", "A6937G", "A6944G", "T6946G", "A6947-", "-6968G", "-6969A", "-6970G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975A", "-6976T", "-6977A", "-6979T", "-6980G", "-6981C", "-6982A", "-6983A", "-6984C", "A6986C", "T6988G", "-6991A", "-6993A", "-6994T", "-6995A", "-6996A", "-6997T", "-6998G", "-7000A", "-7002C", "C7008T", "A7021C", "A7032G", "A7037C", "T7038A", "A7060G", "T7081C", "A7095T", "T7150C", "A7154G", "A7155G", "T7156A", "G7160A", "G7162T", "A7163-", "T7165-", "G7168C", "G7256A", "A7265T", "G7269A", "A7289C", "G7343A", "A7375G", "A7376G", "C7392T", "A7420G", "A7549G", "A7589G", "C7625T", "T7630G", "G7672A", "G7688A", "C7699T", "A7713G", "A7717G", "A7782G", "G7790T", "C7801G", "A7880C", "A7891G", "G7892T", "A7918G", "A7921G", "G7938C", "C7940T", "C7950T", "A7995G", "G8019A", "A8029T", "G8117A", "G8123A", "G8124A", "G8130T", "C8131G", "C8145T", "C8167T", "C8169T", "C8171A", "T8176C", "G8180A", "T8197C", "T8218C", "G8245A", "T8320A", "G8329A", "G8335A", "A8338G", "G8357T", "T8366G", "T8374C", "A8399G", "A8468T", "T8492C", "T8505C", "A8516G", "C8606T", "A8739G", "T8786G", "T8789G", "A8819G", "A8823G", "C8828A", "A8847C", "G8848A", "C8849T", "C8850G", "C8867T", "G8888A", "A8892G", "A8893T", "C8900T", "C8904T", "G8905C", "C8913A", "A8922C", "C8960A", "T8961G", "G8962A", "A8963G", "C8964A", "C8966T", "A8967C", "G8968T", "A8969G", "G8970-", "-8974G", "C8975A", "T8976C", "A8978G", "A8979C", "A8980G", "G8982A", "C8985G", "T8986C", "T8987A", "C8989A", "C8992-", "G8995C", "G8996T", "T9001A", "T9002-", "C9003-", "-9009A", "G9011-", "C9012-", "G9013-", "T9014-", "C9017-", "G9020-", "G9021-", "G9022-", "G9024-", "G9025-", "G9026-", "C9028-", "G9030-", "G9031-", "G9032-", "G9033-", "T9036-", "G9037-", "G9038-", "C9039-", "T9040-", "A9042T", "C9044T", "C9047-", "G9049C", "T9051A", "G9052C", "C9053G", "C9056-", "T9058-", "T9060-", "G9063-", "C9064-", "G9066-", "C9067-", "T9068-", "G9069-", "C9070-", "T9071-", "T9072-", "T9073-", "T9074-", "C9075-", "G9076-", "C9077-", "C9078-", "T9079-", "G9080-", "T9081-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "G9096-", "T9097-", "T9098-", "G9100-", "C9102-", "C9103-", "A9104-", "G9105-", "A9106-", "T9107-", "T9108-", "T9109-", "C9114G"], "RT-p51": ["Q85H", "I135V", "I142V", "S163N", "E177K", "E194Q", "A200T", "K211R", "A243T", "V261L", "K277N"], "RT-p66": ["Q85H", "I135V", "I142V", "S163N", "E177K", "E194Q", "A200T", "K211R", "A243T", "V261L", "K277N", "Q524K"], "gp120": ["N1S", "N5K", "E34D", "K35P", "E59-", "T62S", "Q86E", "L94I", "N102E", "T104H", "V106A", "-107N", "N108V", "T110A", "T112S", "-113T", "-114R", "-123E", "E125N", "I126M", "N157-", "N158T", "S159K", "N161T", "S162R", "N167S", "T170S", "I185V", "K204R", "K212M"], "gp41": ["A14T", "I24M", "T25A", "A30V", "N96A", "S107T", "D109E", "D129N", "R133S", "E137G", "N160S", "I193L", "V197F", "S212T", "P213S", "P216L", "K231R", "S239N", "L242F", "D272N", "R273K", "K276R", "G278A", "A281V", "A289V", "Q290K", "G293S"], "p1": ["W6L", "N9H"], "p17": ["E17C", "K18S", "I19N", "I60L", "L68I", "G71A", "V82I", "R91K", "E93D", "L101V", "Q113R"], "p2": ["Q6R", "N9G", "-10A"], "p24": ["A14N", "I27V", "Q50G", "T58S", "H87Q", "M96I", "A116T", "E159N", "E180D", "T210N", "E213D", "I230V"], "p6": ["P23-", "S24P", "P25S", "K31Q", "L35Q", "Y36F", "S51L"], "p7": ["R34K", "K38R", "E51G"], "pro": ["L10V", "L19I", "L23I", "R57K", "I93L"], "rev": ["K30N", "P31L", "S61C", "G90E", "R95G", "G96S", "H107C", "A108E", "G111E", "*117Q"], "tat": ["K24N", "K29R", "T40S", "Y47H", "T58A", "H65Y", "K71E", "A77P", "P81S"], "vif": ["V31I", "K34Q", "F39S", "R41K", "H48N", "R50K", "V51A", "E60K", "S63R", "D78K", "Q83H", "R90W", "R93K", "G101D"], "vpr": ["H40Q", "H45Y", "I84Y"], "vpu": ["S2L", "P3S", "L4E", "L5N", "V7L"]}, "labels": {"aa": "RT-p51: Q85H, I135V, I142V, S163N, E177K, E194Q, A200T, K211R, A243T, V261L, K277N; RT-p66: Q85H, I135V, I142V, S163N, E177K, E194Q, A200T, K211R, A243T, V261L, K277N, Q524K; gp120: N1S, N5K, E34D, K35P, E59-, T62S, Q86E, L94I, N102E, T104H, V106A, -107N, N108V, T110A, T112S, -113T, -114R, -123E, E125N, I126M, N157-, N158T, S159K, N161T, S162R, N167S, T170S, I185V, K204R, K212M; gp41: A14T, I24M, T25A, A30V, N96A, S107T, D109E, D129N, R133S, E137G, N160S, I193L, V197F, S212T, P213S, P216L, K231R, S239N, L242F, D272N, R273K, K276R, G278A, A281V, A289V, Q290K, G293S; p1: W6L, N9H; p17: E17C, K18S, I19N, I60L, L68I, G71A, V82I, R91K, E93D, L101V, Q113R; p2: Q6R, N9G, -10A; p24: A14N, I27V, Q50G, T58S, H87Q, M96I, A116T, E159N, E180D, T210N, E213D, I230V; p6: P23-, S24P, P25S, K31Q, L35Q, Y36F, S51L; p7: R34K, K38R, E51G; pro: L10V, L19I, L23I, R57K, I93L; rev: K30N, P31L, S61C, G90E, R95G, G96S, H107C, A108E, G111E, *117Q; tat: K24N, K29R, T40S, Y47H, T58A, H65Y, K71E, A77P, P81S; vif: V31I, K34Q, F39S, R41K, H48N, R50K, V51A, E60K, S63R, D78K, Q83H, R90W, R93K, G101D; vpr: H40Q, H45Y, I84Y; vpu: S2L, P3S, L4E, L5N, V7L"}}}, {"name": "F2_NODE_0000002", "node_attrs": {"div": 0.10188, "clade_membership": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["G298C", "A302T", "-305T", "G354A", "G365C", "G378T", "A380T", "G425A", "G428A", "C435T", "T476C", "A509G", "C510A", "G520C", "A524G", "A576G", "A611T", "G619A", "A647G", "G752A", "T773C", "A806G", "A809G", "A836G", "T944C", "C950T", "C974T", "G977A", "T978G", "A1022G", "T1055C", "A1115T", "A1142G", "A1193G", "T1238C", "C1243T", "T1299C", "C1316T", "G1354C", "A1361C", "A1382T", "G1388A", "A1400G", "G1404A", "A1450C", "T1451A", "A1454T", "-1457A", "-1458T", "-1459C", "A1463G", "T1501C", "G1503A", "A1526G", "T1535C", "A1536T", "A1543G", "C1598T", "C1610T", "A1670G", "C1724T", "A1733G", "-1743A", "-1744C", "-1745C", "T1785C", "A1804G", "T1826A", "A1835G", "G1841A", "G1845A", "A1852C", "C1913A", "A1982G", "C1986A", "A2026G", "G2032A", "A2059G", "T2129C", "T2171C", "T2299C", "A2305G", "T2365C", "T2449G", "A2455G", "T2542C", "G2612A", "T2632A", "T2653C", "G2686A", "A2699G", "A2722C", "A2755G", "A2884G", "G2921A", "C2929A", "C2942A", "G2947A", "A2956G", "G2995A", "C3128A", "T3139C", "A3163G", "G3169A", "A3218G", "G3307A", "G3316A", "G3340A", "G3477A", "A3487G", "A3490G", "C3542T", "A3543G", "C3559T", "A3607G", "A3616G", "T3628C", "G3664A", "A3676G", "C3692T", "G3694A", "G3718A", "C3751T", "A3755T", "A3868G", "T3904C", "G3925A", "T3977C", "A4030G", "A4051G", "T4110C", "G4156A", "A4178G", "G4183C", "A4195G", "A4228G", "A4264T", "A4356G", "A4391T", "A4397C", "A4410C", "A4427T", "T4441A", "A4474C", "A4492C", "C4501T", "T4540C", "A4573G", "C4576T", "A4592C", "A4684G", "A4692G", "A4693C", "G4719C", "T4730C", "A4765C", "G4766A", "A4774C", "A4858G", "T4890C", "A4952T", "C4955T", "T4959C", "T4988C", "A5015G", "C5050A", "A5059G", "T5062C", "G5087C", "G5128A", "T5188G", "G5212A", "A5247G", "A5272G", "T5292C", "C5333T", "A5345G", "G5359A", "A5360G", "A5383G", "A5385G", "T5391C", "C5397A", "C5398A", "T5424C", "T5436G", "T5466C", "G5495C", "A5563G", "T5602G", "T5611C", "C5615A", "G5629-", "A5652G", "A5699G", "C5704A", "G5706A", "G5711A", "A5717G", "G5720A", "T5899A", "A5907G", "C5916A", "T5920A", "C5949G", "A5958G", "A6022G", "G6028A", "A6030C", "A6059G", "A6119C", "A6130G", "G6167A", "-6173A", "-6174C", "-6175T", "G6179A", "A6194-", "-6201C", "-6203C", "-6205T", "-6207A", "T6213C", "A6223-", "G6224-", "A6230G", "T6241C", "G6262A", "T6271C", "A6323G", "A6335G", "A6338-", "G6339-", "A6371G", "T6403G", "G6451A", "C6469T", "A6525G", "A6544G", "C6548T", "G6566T", "A6574T", "G6593A", "A6599C", "T6610C", "G6611A", "A6616G", "C6618A", "T6637C", "A6639G", "G6644A", "A6695C", "C6713A", "A6727C", "C6758T", "A6765C", "G6797A", "A6798C", "G6806A", "C6807T", "A6810C", "-6832T", "-6833A", "-6834G", "T6835C", "A6848-", "C6850-", "A6856C", "A6910G", "C6928T", "A6932T", "G6936C", "A6937T", "-6948C", "-6949A", "-6977G", "-6991C", "-6993C", "-6994A", "-6995G", "-6996G", "-7002A", "-7004G", "-7005G", "-7006C", "T7015C", "C7016A", "C7019T", "C7020A", "A7021T", "G7040A", "C7045T", "C7064A", "G7065A", "T7090A", "A7113G", "C7127A", "G7137T", "A7149G", "T7150A", "T7153A", "-7164G", "G7197A", "A7237G", "C7250T", "A7290G", "G7291C", "A7313C", "G7315A", "A7402G", "A7447-", "A7456G", "T7462C", "C7463T", "G7504A", "C7561A", "A7617G", "A7633C", "G7640C", "C7642A", "A7676G", "G7677C", "A7689G", "A7693C", "A7700C", "G7701A", "T7702A", "A7721G", "G7744A", "G7754T", "G7760A", "A7761G", "A7763C", "C7791A", "T7792C", "C7801A", "G7846A", "T7879A", "A7883G", "A7887G", "T7888A", "A7918T", "A7992G", "A8032G", "C8038G", "G8055A", "G8117-", "A8118-", "C8119A", "-8120C", "-8121C", "-8122A", "A8128C", "C8129T", "G8133A", "G8144A", "G8168A", "A8172T", "T8174C", "T8197G", "C8213T", "A8216G", "A8308G", "T8321-", "T8322C", "T8323-", "T8369C", "C8406A", "T8414G", "A8446G", "C8460T", "G8487A", "T8501A", "C8521A", "G8522A", "G8534A", "T8558C", "C8676T", "C8684T", "A8693G", "T8747C", "A8750C", "A8762G", "T8786C", "G8787A", "A8788G", "T8789C", "G8834A", "A8874G", "A8887T", "C8904A", "G8942A", "A8954G", "G8955A", "-8971C", "-8974C", "A8979G", "T9108C", "A9119C", "A9131G"], "INT": ["M50I", "I135V", "Q136N", "Y194C", "T206S", "I208L", "E212A", "T218S", "N222K", "K273Q"], "RT-p51": ["A173T", "I202V", "V276I", "H278Q", "L283I", "P345T", "I375V", "V386I", "T403A"], "RT-p66": ["A173T", "I202V", "V276I", "H278Q", "L283I", "P345T", "I375V", "V386I", "T403A", "R461K", "H483C"], "gp120": ["K18R", "T21N", "A32G", "K35R", "I56M", "E59A", "K69E", "K89Q", "D105N", "-107T", "T109H", "T112P", "-113N", "-116M", "-117E", "G124E", "I126V", "I153V", "N157D", "N161G", "S162-", "I173V", "D183E", "K224R", "A238S", "E240D", "D241G", "E247K", "I249L", "A253T", "T255N", "V264I", "I281L", "Q287R", "N304T", "E315K", "-319E", "L321I", "N328-", "T330N", "I332S", "G361A", "N369-", "-374T", "-375A", "-379N", "-380T", "-381G", "-382N", "-383N", "-384G", "-385T", "L388I", "P389Y", "R404K", "N420S", "L425I", "R428I", "G431N", "N432R", "N433T", "-436K", "T437S", "R448K", "Q476R", "K479S"], "gp41": ["M4L", "N96T", "N105S", "S107P", "Y108H", "E110D", "D113Q", "S125A", "D129G", "R133Q", "N140D", "A151S", "D153S", "K154Q", "I194V", "N195R", "D230G", "A243S", "A245V", "S251I", "D272-", "R273G", "G274D", "L275C", "K276N", "A281T", "A289T", "Q290L", "Y291H", "N298K", "L304F", "N305D", "F340A"], "nef": ["A15T", "I20L", "E28A", "G29E", "V30G", "V33A", "Q35R", "H40Y", "A60E", "Y81F", "H89F", "D149S", "R178G", "K182M", "R198K"], "p17": ["V7I", "A15S", "Q59K", "G62A", "T81A", "R95K"], "p2": ["N9A", "-10V", "-12S", "I13M"], "p24": ["L83V", "E128D", "T171I", "G208A", "G225S"], "p6": ["Y36P", "K42R"], "p7": ["I12T", "V13I", "I24L", "K26R"], "pro": ["L10I", "I13V", "V15I", "G16E", "Q18H", "P39T", "I62V", "L63H"], "rev": ["T62A", "L64V", "S99N", "V109A", "*117E"], "tat": ["I3V", "N7K", "L8I", "K63E"], "vif": ["E2D", "K33R", "K36A", "E45Q", "E60A", "Q91R", "K122N", "T155N", "K158R", "R167S", "K179R", "R181K"], "vpr": ["H28Q", "N48S", "I63T", "R85Q", "N93S", "S94G", "S96P"], "vpu": ["S2-", "L4Y", "V8L", "K31R", "L33I", "R35K", "R41K", "E44K"]}, "labels": {"aa": "INT: M50I, I135V, Q136N, Y194C, T206S, I208L, E212A, T218S, N222K, K273Q; RT-p51: A173T, I202V, V276I, H278Q, L283I, P345T, I375V, V386I, T403A; RT-p66: A173T, I202V, V276I, H278Q, L283I, P345T, I375V, V386I, T403A, R461K, H483C; gp120: K18R, T21N, A32G, K35R, I56M, E59A, K69E, K89Q, D105N, -107T, T109H, T112P, -113N, -116M, -117E, G124E, I126V, I153V, N157D, N161G, S162-, I173V, D183E, K224R, A238S, E240D, D241G, E247K, I249L, A253T, T255N, V264I, I281L, Q287R, N304T, E315K, -319E, L321I, N328-, T330N, I332S, G361A, N369-, -374T, -375A, -379N, -380T, -381G, -382N, -383N, -384G, -385T, L388I, P389Y, R404K, N420S, L425I, R428I, G431N, N432R, N433T, -436K, T437S, R448K, Q476R, K479S; gp41: M4L, N96T, N105S, S107P, Y108H, E110D, D113Q, S125A, D129G, R133Q, N140D, A151S, D153S, K154Q, I194V, N195R, D230G, A243S, A245V, S251I, D272-, R273G, G274D, L275C, K276N, A281T, A289T, Q290L, Y291H, N298K, L304F, N305D, F340A; nef: A15T, I20L, E28A, G29E, V30G, V33A, Q35R, H40Y, A60E, Y81F, H89F, D149S, R178G, K182M, R198K; p17: V7I, A15S, Q59K, G62A, T81A, R95K; p2: N9A, -10V, -12S, I13M; p24: L83V, E128D, T171I, G208A, G225S; p6: Y36P, K42R; p7: I12T, V13I, I24L, K26R; pro: L10I, I13V, V15I, G16E, Q18H, P39T, I62V, L63H; rev: T62A, L64V, S99N, V109A, *117E; tat: I3V, N7K, L8I, K63E; vif: E2D, K33R, K36A, E45Q, E60A, Q91R, K122N, T155N, K158R, R167S, K179R, R181K; vpr: H28Q, N48S, I63T, R85Q, N93S, S94G, S96P; vpu: S2-, L4Y, V8L, K31R, L33I, R35K, R41K, E44K"}}, "children": [{"name": "MK086131", "node_attrs": {"div": 0.12229, "accession": "MK086131", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "LB022_1"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["G321T", "T377C", "C525T", "G629A", "T636C", "G644A", "-704A", "G716-", "A785G", "T885C", "A938G", "T1040C", "C1175T", "T1182C", "G1673A", "A1686G", "G1687A", "C1693T", "C1761A", "A1776C", "C2149G", "G2173A", "G2224A", "A2227G", "A2275G", "G2372C", "G2449A", "T2453C", "A2545G", "A2616G", "T2620C", "A2626T", "A2627C", "G2704A", "G2705C", "G2725A", "G2878A", "T2944C", "A3136G", "G3280A", "C3322T", "T3412C", "A3463G", "C3500T", "G3523A", "G3553A", "G3980C", "G4004A", "C4079T", "T4177C", "C4199T", "A4205T", "A4212T", "A4225C", "G4226C", "T4227C", "G4228T", "G4229C", "T4247C", "A4256-", "C4258T", "G4267T", "T4302C", "T4317C", "G4335C", "A4339C", "A4577C", "T4826C", "C5084A", "G5185A", "C5234A", "A5235T", "A5246C", "A5444C", "A5448G", "T5451C", "G5463A", "A5587G", "T5617C", "T5621-", "A5622-", "-5629C", "T5633C", "A5658C", "A5687T", "T5707G", "A5743C", "A5751C", "A5787T", "T5788G", "T5789C", "G5790A", "G5805-", "G5806-", "T5807-", "G5808-", "G5809-", "G5810-", "G5811-", "-5816A", "-5817G", "-5818G", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5908G", "C6007T", "A6065C", "T6166C", "T6178C", "A6179C", "C6180A", "T6187C", "A6188C", "A6192G", "T6196-", "A6197-", "A6200C", "-6204G", "A6207G", "A6209G", "T6210C", "C6213G", "G6218-", "A6219-", "G6221-", "A6222-", "G6225-", "T6322C", "A6330G", "G6333C", "T6337A", "A6340-", "G6391A", "C6397T", "A6488G", "A6602T", "T6745C", "A6751G", "G6773A", "A6830C", "A6831G", "G6834A", "C6835A", "A6840T", "A6842T", "T6844G", "A6845-", "T6846-", "A6847-", "C6849-", "A6854G", "C6858A", "T6860C", "T6863G", "-6950A", "-6951C", "-6952T", "-6953C", "-6954T", "-6955G", "-6956T", "-6957T", "-6958T", "-6959A", "-6960A", "-6961T", "-6962A", "-6963C", "-6964A", "-6965A", "-6966C", "-6967A", "A6978C", "-6979T", "-6980C", "-6981T", "-6982G", "-6983G", "-6984G", "A6989G", "-6997G", "-6998A", "-7000T", "G7005A", "C7008A", "G7288A", "C7529T", "T7618G", "C7623A", "C7625T", "A7632C", "T7675A", "A7818G", "A7996C", "G7997A", "A8011C", "C8051A", "G8127A", "A8204G", "G8317-", "G8318-", "G8319-", "T8320-", "C8322-", "G8324-", "A8325-", "A8326-", "A8327-", "G8328-", "G8329-", "G8330-", "C8331-", "T8332-", "T8333-", "T8334-", "G8335-", "C8336-", "T8337-", "A8338-", "T8339-", "A8340-", "A8342G", "A8343T", "A8353T", "G8354A", "T8355A", "T8358G", "C8359A", "A8362G", "A8364C", "G8365T", "T8366A", "C8369A", "T8371G", "G8373A", "T8374C", "T8375C", "G8376C", "G8377C", "T8379C", "G8380C", "G8381A", "C8382G", "T8387A", "A8388G", "T8389A", "G8414A", "A8425C", "G8428A", "G8429A", "T8431G", "G8439T", "T8440C", "G8441T", "C8443T", "T8444G", "T8505G", "G8507A", "A8564G", "T8582G", "G8590C", "G8846A", "A8885G", "A8922T", "T9002-", "C9017-", "G9020-", "G9021-", "G9022-", "G9024-", "G9025-", "G9026-", "C9028-", "G9030-", "G9031-", "G9032-", "G9033-", "T9036-", "G9037-", "G9038-", "C9039-", "T9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "T9058-", "T9060-", "G9063-", "C9064-", "G9066-", "C9067-", "T9068-", "G9069-", "C9070-", "T9071-", "T9072-", "T9073-", "T9074-", "C9075-", "G9076-", "C9077-", "C9078-", "T9079-", "G9080-", "T9081-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "G9096-", "T9097-", "T9098-", "G9100-"], "INT": ["I161-", "Q164H", "V176A", "F181S", "R187T", "K188N", "I268L"], "RT-p51": ["G93R", "K174R", "E177D", "I178L", "E204Q"], "RT-p66": ["G93R", "K174R", "E177D", "I178L", "E204Q"], "gp120": ["N71H", "N113S", "E122-", "E124-", "S160T", "G161E", "K212E", "T250S", "G307R", "K316V", "E320K", "K322R", "N334D", "P335Q", "S336P", "S337A", "R351G", "-367A", "-368L", "-369F", "-370N", "-371T", "-376L", "-377G", "N379D", "G384D", "T385N", "K436E"], "nef": ["M1L", "L55V", "G83A", "M168I", "I194L"], "p6": ["S3D", "P5L", "L26K", "Q28E", "E29Q", "Q30K", "K31D", "D32Q", "K33E", "E34Q"], "p7": ["G43A"], "rev": ["R50Q", "I55L", "A68E"], "tat": ["N23T", "K71E"], "vpr": ["Q44M", "S48R"], "vpu": ["I9T", "Y27F", "L34V", "K44Q", "I46L", "E48D", "L67-", "G68-", "E70-"]}, "labels": {"aa": "INT: I161-, Q164H, V176A, F181S, R187T, K188N, I268L; RT-p51: G93R, K174R, E177D, I178L, E204Q; RT-p66: G93R, K174R, E177D, I178L, E204Q; gp120: N71H, N113S, E122-, E124-, S160T, G161E, K212E, T250S, G307R, K316V, E320K, K322R, N334D, P335Q, S336P, S337A, R351G, -367A, -368L, -369F, -370N, -371T, -376L, -377G, N379D, G384D, T385N, K436E; nef: M1L, L55V, G83A, M168I, I194L; p6: S3D, P5L, L26K, Q28E, E29Q, Q30K, K31D, D32Q, K33E, E34Q; p7: G43A; rev: R50Q, I55L, A68E; tat: N23T, K71E; vpr: Q44M, S48R; vpu: I9T, Y27F, L34V, K44Q, I46L, E48D, L67-, G68-, E70-"}}}, {"name": "JX140672", "node_attrs": {"div": 0.11354, "accession": "JX140672", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "DEMF210CM001"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["G329A", "A330G", "G491A", "G989A", "A1079G", "A1544G", "A1700T", "A1701T", "C1756T", "G1879A", "A1932G", "T1999C", "G2293A", "A2592G", "C2621T", "G2665A", "A2678C", "G2822A", "C2845T", "A2932G", "A3019G", "T3067A", "G3127A", "A3205G", "A3388G", "G3427A", "G3442A", "G3556A", "G3775A", "T3856C", "T4144C", "C4181A", "G4941A", "A5065G", "G5075A", "C5248T", "A5431G", "G5575A", "-5620A", "G5626C", "A5628G", "T5630-", "A5631-", "A5637T", "T5648C", "C5651T", "C5737A", "G5777A", "T5866G", "A5921G", "C5922T", "G6074A", "T6091C", "C6115T", "C6139T", "A6177C", "C6183A", "T6184C", "T6193C", "-6194C", "-6195A", "G6198C", "-6204C", "A6208T", "G6211C", "A6214C", "-6215A", "-6216T", "-6217G", "-6220G", "-6223G", "-6224C", "G6226A", "A6229G", "A6319G", "A6324G", "A6326G", 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"D78Y", "Q80R", "I84M", "N96T", "I124V", "R133T", "K144N", "Q147K", "A151E", "D156N", "T163D", "T165S", "L204V", "P213S", "G221E", "E225G", "I266L", "A268T", "K276R", "G277E", "E280K", "A289T", "L304F", "T306A", "T307I", "V310A", "V321G", "A325V", "I329V"], "nef": ["P24E", "A25G", "K39R", "H40R", "S46R", "A50D", "S53P", "R71K", "S88G", "E98D", "I194L", "R196K", "R198L", "K204T", "D205E"], "p1": ["N9Q", "K10G"], "p17": ["R20Q", "K28R", "G49D", "G62A", "L68F", "L75I", "Y79F", "Q113-", "K114-", "T115-", "A118G", "Q130K", "Y132F"], "p2": ["Q6K", "N9Q", "-10S"], "p24": ["P92A"], "p6": ["S3N", "T22E", "P23-", "S24-", "P25-", "-26Q", "Q28K", "Q30N", "K31-", "D32-", "K33-", "E34-", "*50L"], "pro": ["I13V", "Q69H", "I72V"], "rev": ["E11D", "L13I", "P31L", "T62S", "N84T", "S86N", "R95G", "G98E"], "tat": ["N7E", "K19E", "N23T", "R40S", "I45L", "T58S", "P59H", "S61G", "K63E", "V69I", "E86K"], "vif": ["G37N", "E60K", "R93K", "G101E", "R167K"], "vpr": ["N48E", "E55G", "E58Q", "I70T", "H77Q", "I84N", "I89T", "S96P"], "vpu": ["L4V", "I6A", "V8G", "F12L", "L34V", "R41W", "Y43F", "I46L", "R47S", "I75V", "D78N", "I79L", "N81I"]}, "labels": {"aa": "INT: S17N, R20K, I101L, K103R, M154I, N255K, E256D; RT-p51: E40D, S162C, A173T, S250D, L303M, S322A, I341V, K356R, V371A; RT-p66: E40D, S162C, A173T, S250D, L303M, S322A, I341V, K356R, V371A, A446S; gp120: V40A, I56M, V57R, E59I, K69N, N71S, I81V, L94I, V106A, -107Q, N108K, T109V, T110N, T112S, -113N, -114T, E125A, K142E, E144Q, I156L, N157E, N158G, N161S, I173V, A176T, D202E, L210P, K212N, A238S, E247K, A253T, T255N, F260L, V264I, E294D, N304V, G307K, E315Q, -319K, L321F, -323N, -324K, -325S, -326N, -327L, K329G, P335T, S337A, S360T, T365M, T366A, -368D, -370D, -372M, -375M, -377D, -379K, -380T, -381E, T387V, K414T, N418I, N433T, N434T, -436E, E438L, I439-, L440-, R448K, Q476R, K479Q; gp41: L9I, A22V, I24T, T25A, A30T, S42N, I69L, D78Y, Q80R, I84M, N96T, I124V, R133T, K144N, Q147K, A151E, D156N, T163D, T165S, L204V, P213S, G221E, E225G, I266L, A268T, K276R, G277E, E280K, A289T, L304F, T306A, T307I, V310A, V321G, A325V, I329V; nef: P24E, A25G, K39R, H40R, S46R, A50D, S53P, R71K, S88G, E98D, I194L, R196K, R198L, K204T, D205E; p1: N9Q, K10G; p17: R20Q, K28R, G49D, G62A, L68F, L75I, Y79F, Q113-, K114-, T115-, A118G, Q130K, Y132F; p2: Q6K, N9Q, -10S; p24: P92A; p6: S3N, T22E, P23-, S24-, P25-, -26Q, Q28K, Q30N, K31-, D32-, K33-, E34-, *50L; pro: I13V, Q69H, I72V; rev: E11D, L13I, P31L, T62S, N84T, S86N, R95G, G98E; tat: N7E, K19E, N23T, R40S, I45L, T58S, P59H, S61G, K63E, V69I, E86K; vif: G37N, E60K, R93K, G101E, R167K; vpr: N48E, E55G, E58Q, I70T, H77Q, I84N, I89T, S96P; vpu: L4V, I6A, V8G, F12L, L34V, R41W, Y43F, I46L, R47S, I75V, D78N, I79L, N81I"}}}, {"name": "MN153485", "node_attrs": {"div": 0.12229, "accession": "MN153485", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 2008.0}, "Strain_name": {"value": "08CMBDSH24"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["A256-", "A263G", "-305C", "T309-", "G378T", "C379T", "A390G", "A399C", "A412G", "A419G", "C435A", "A524G", "C525T", "T549A", "A563G", "A605G", "G607A", "A615G", "G619A", "C648G", "A665G", "A676G", "G692A", "A700G", "T728C", "G752A", "G762A", "A764G", "G771A", "C772A", "T789C", "G821A", "T852A", "A878T", "A1002C", "T1003A", "C1008G", "T1040C", "A1070G", "C1094T", "C1169T", "T1182C", "C1187T", "A1205G", "C1211T", "C1261G", "T1262C", "A1271T", "G1278A", "G1279A", "C1292T", "A1339G", "A1361C", "G1394A", "C1406T", "A1446C", "C1447A", "-1458A", "-1459C", "A1476G", "G1495A", "T1501C", "C1514T", "A1543G", "C1571A", "A1587C", "A1643G", "G1661A", "G1673A", "T1676C", "A1701T", "G1731C", "A1733G", "-1746A", "-1747C", "-1748T", "T1752C", "C1755T", "T1785C", "A1786T", "T1787C", "C1825T", "G1841A", "T1864G", "A1918G", "G1942A", "A1982G", "A2005G", "G2027A", "G2074A", "A2154G", "C2206A", "A2212T", "T2356C", "G2392A", "G2417A", "T2494C", "C2500A", "A2545G", "G2567A", "T2607A", "T2608C", "A2627T", "A2637G", "C2638T", "A2645G", "G2647A", "A2674G", "G2683A", "G2692A", "C2756T", "C2845T", "T2863C", "C2942A", "G2947A", "A2956G", "T2968C", "C2978A", "A2992G", "C3013T", "G3016A", "C3023T", "A3061G", "T3067C", "A3080G", "G3085A", "T3097C", "T3112C", "C3140T", "A3229G", "G3230A", "A3249G", "C3318T", "T3399C", "G3438A", "G3442A", "G3467A", "G3494A", "A3529G", "T3541C", "A3562G", "T3644A", "A3684G", "A3703G", "T3742C", "C3763T", "G3775A", "A3816G", "T3844C", "C3940T", "T3946C", "A3988G", "A4064G", "C4069G", "C4258T", "A4315G", "G4354A", "G4388T", "C4396T", "T4405C", "T4412C", "A4422G", "T4455A", "C4471T", "A4539G", "G4549A", "A4558C", "C4665T", "T4676C", "G4677C", "T4678G", "G4689A", "A4693G", "A4697G", "T4701A", "A4721C", "C4754T", "G4770T", "A4782G", "T4799G", "G4871T", "G4887A", "C4914T", "T4932G", "G4963A", "T4967G", "A5015C", "A5056G", "G5069A", "G5075T", "A5085C", "T5147C", "T5182C", "G5215A", "C5221T", "G5269A", "A5299G", "C5303T", "A5308C", "C5314T", "T5357C", "C5412A", "A5448C", "T5515C", "A5594G", "G5599A", "G5610A", "C5614A", "T5618A", "G5619T", "C5620A", "G5629A", "T5630C", "A5632G", "G5635A", "T5642A", "C5651T", "C5653A", "T5657C", "A5668G", "T5670G", "T5684C", "A5703G", "C5704T", "T5705G", "T5708C", "A5717G", "A5728C", "G5729A", "G5737C", "A5787T", "T5788G", "T5789C", "G5790A", "C5792A", "A5793G", "C5795A", "C5797T", "T5799G", "G5801C", "G5802A", "G5806C", "G5808T", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5834A", "A5842G", "A5846T", "C5851T", "T5866A", "A5881G", "A5914T", "A5918G", "G5954A", "A5957C", "T5964C", "T5968C", "T5984C", "A6009G", "A6020G", "G6028A", "A6044T", "T6109A", "C6110G", "G6167-", "A6168-", "T6169-", "G6170-", "T6171-", "T6172-", "A6182C", "C6183T", "T6184C", "A6185T", "T6190C", "A6191G", "T6193G", "T6196C", "T6199C", "-6203C", "-6204T", "-6205G", "-6209G", "-6210A", "G6211A", "A6212C", "T6213A", "A6214G", "-6215G", "-6216A", "-6217G", "-6220G", "A6222T", "G6224-", "G6225-", "G6226-", "G6227-", "A6228-", "A6229-", "A6232G", "A6251G", "C6256T", "G6262A", "A6263G", "T6264C", "G6267T", "G6277A", "T6287C", "T6289G", "G6303A", "T6322G", "A6327C", "G6333A", "A6335G", "A6340T", "A6354G", "T6361C", "C6375A", "T6403G", "T6445C", "A6462C", "A6464G", "G6481A", "C6482A", "A6489G", "G6490A", "A6505C", "A6526G", "G6532A", "T6582A", "A6639C", "A6648C", "A6654G", "C6673T", "T6676C", "G6687A", "-6697A", "-6698G", "-6699G", "-6700T", "-6701A", "-6702T", "C6708G", "T6722C", "T6724G", "A6752C", "A6771G", "C6777A", "T6780A", "T6787G", "G6788A", "C6790T", "A6800C", "A6810G", "A6822G", "A6825T", "T6827C", "-6829T", "-6833A", "-6834A", "T6838A", "A6839T", "A6840C", "A6844C", "C6849A", "C6850A", "T6860G", "C6874T", "G6894T", "T6895G", "A6907G", "C6933G", "A6934T", "A6947C", "-6948A", "A6949C", "-6953A", "-6954T", "-6955A", "-6956G", "-6957C", "-6958T", "-6962G", "-6963A", "-6964A", "-6979A", "-6980G", "-6981G", "-6982A", "-6983A", "A6986G", "T6988C", "-6990A", "-6991T", "-6999G", "-7002C", "-7005A", "-7006C", "A7032G", "A7037T", "C7045A", "A7063G", "G7065A", "G7088A", "C7089G", "T7090C", "A7095G", "A7096G", "A7113G", "C7127T", "C7134T", "A7151G", "A7152G", "G7162C", "T7165G", "-7168G", "-7170T", "C7172A", "A7183G", "G7186A", "G7231A", "G7256A", "A7265T", "G7281C", "A7297C", "A7313G", "A7322G", "T7325C", "G7366A", "T7386C", "A7420G", "C7429T", "A7532C", "A7590G", "T7591A", "T7604G", "G7631A", "A7632C", "C7642A", "A7669G", "G7790A", "A7820T", "G7831A", "G7868A", "A7883G", "T7888A", "G7915A", "A7918G", "G7942A", "A7953G", "G7962A", "C7988A", "A7989G", "A7996C", "G8019A", "A8032G", "C8033A", "T8034G", "C8037T", "A8050C", "C8065T", "A8079T", "C8080A", "C8119G", "-8120A", "-8121G", "-8122G", "G8125A", "G8126C", "G8127T", "A8128G", "A8132G", "G8133C", "C8146A", "C8147A", "T8155C", "C8156T", "G8168C", "C8169T", "C8171A", "C8220G", "A8228G", "G8276C", "A8288T", "C8291A", "G8317A", "T8348A", "G8349A", "G8350A", "A8352C", "T8366A", "G8368A", "T8369A", "A8370T", "T8374C", "G8376A", "G8377A", "A8402G", "T8414C", "G8441T", "T8451C", "A8469G", "G8488C", "G8489A", "C8500G", "T8505A", "G8507A", "A8525C", "A8564G", "A8584T", "C8676T", "C8741T", "T8745C", "A8762C", "G8787C", "A8801G", "C8828T", "T8835C", "G8876A", "A8885G", "A8893G", "C8913T", "G8914-", "G8915-", "A8916-", "G8917-", "A8918-", "C8919-", "A8920-", "C8921-", "A8922-", "T8923-", "A8924-", "G8925-", "C8926-", "C8927-", "A8928-", "G8929-", "A8930-", "G8931-", "A8932-", "G8933-", "A8934-", "T8935-", "A8936-", "C8937-", "A8938-", "T8939-", "C8940-", "C8941-", "G8942-", "G8943-", "A8944-", "G8945-", "T8946-", "T8947-", "C8948-", "T8949-", "A8950-", "C8951-", "A8952-", "A8953-", "A8954-", "G8955-", "C8992T", "-9015A", "C9075T", "T9084A"], "INT": ["K14R", "T97A", "A205S", "Q216R", "F227Y", "N255S"], "RT-p51": ["K20R", "V108I", "A158T", "F171Y", "I178L", "Y181C", "M184V", "H221Y", "L283I", "L295M", "I329V", "G379S", "K385R", "A408V", "V435A"], "RT-p66": ["K20R", "V108I", "A158T", "F171Y", "I178L", "Y181C", "M184V", "H221Y", "L283I", "L295M", "I329V", "G379S", "K385R", "A408V", "V435A", "R448K", "V458I", "V467I", "L517I", "K530R"], "gp120": ["T22A", "E34K", "K35Q", "V37A", "Y44H", "N52S", "I56V", "N64Y", "D85E", "Q86E", "-107L", "N108Y", "T110E", "-113T", "-114L", "-115T", "-116E", "-117Q", "-118E", "-119E", "-120I", "-121M", "E122-", "G124-", "E125-", "I126-", "I133V", "I137A", "R138I", "Y145Q", "R150K", "I153V", "I156M", "N158T", "S159N", "N161D", "N167S", "T174K", "D183E", "K203T", "N204E", "L210I", "K212R", "I243K", "R262T", "E265A", "N267S", "S278N", "H280R", "-282G", "-283I", "P285R", "Y290Q", "E294A", "K300Q", "Y302H", "N306S", "T308K", "L309Q", "N311K", "D312N", "K316Q", "-319S", "E320L", "K322-", "-327N", "N328K", "K329S", "T332K", "N334K", "S336A", "S347M", "R351G", "T365H", "-367I", "-368A", "-370E", "-372G", "-373T", "-374D", "-375N", "-377T", "-379N", "K393R", "I395F", "N397K", "R404Q", "A412S", "K414R", "N420S", "T427I", "N433G", "-436D", "L440I", "V468I", "T471S", "Q476P", "E481D"], "gp41": ["M4V", "M7V", "F8L", "V28A", "K77Q", "N96R", "S101A", "E110T", "D113E", "R133S", "I173L", "M176I", "A189T", "I194V", "N195K", "D217G", "G220E", "Q229R", "K231N", "S239N", "L244S", "A245V", "H259L", "D272E", "K276Q", "G277A", "L282I", "A289L", "Q290K", "T306S", "I309V", "A325L", "I329F", "L330I"], "nef": ["G3N", "K4Q", "S9K", "I10L", "V11A", "G12K", "I20M", "I43V", "R49A", "L55I", "Q61H", "Y81F", "S149P", "K184R", "R191Y", "R192-", "H193-", "I194-", "A195-", "R196-", "E197-", "R198-", "H199-", "P200-", "E201-", "F202-", "Y203-", "K204-", "D205-"], "p17": ["A15L", "I19V", "K26R", "L34I", "S72T", "V82I", "R91K", "I94V", "R95K", "Q105E", "K114R", "K122R"], "p2": ["T8Q", "N9H", "-12T"], "p24": ["V11M", "A14N", "S41T", "I91H", "P93A", "A177G", "E180D", "G183N", "K203R"], "p6": ["T8S", "S14P", "G16R", "F17-", "G18-", "E19-", "I21E", "T22I", "P23T", "S24P", "-26S", "Y36P", "P49L"], "p7": ["S4G", "R10K", "I12T", "K26R", "K41Q"], "pro": ["V15I", "I62V", "L63P", "V77I"], "rev": ["E32K", "A47E", "T62E", "T68P", "L73F", "L78I", "Q91E", "E94A", "R95S", "P100N", "S103L", "H107P", "A108E"], "tat": ["N12K", "K24N", "Y47H", "R78Q", "T82A", "E85K"], "vif": ["H27Y", "V31R", "A35T", "K36R", "G37R", "F39I", "E45D", "D62S", "S63K", "I66V", "R95S", "G101S", "H110Y", "S116A", "G126E", "H127Q", "K157R", "L163F", "R167Q"], "vpr": ["Y15H"], "vpu": ["M1I", "L3I", "L4Y", "L5I", "V8T", "I9V", "V10I", "F12Y", "A15V", "L16I", "I17T", "I21V", "V26A", "L33W", "L34S", "K37R", "R41Q", "E44Q", "A66E", "V71M", "P76H", "I79V", "N80I"]}, "labels": {"aa": "INT: K14R, T97A, A205S, Q216R, F227Y, N255S; RT-p51: K20R, V108I, A158T, F171Y, I178L, Y181C, M184V, H221Y, L283I, L295M, I329V, G379S, K385R, A408V, V435A; RT-p66: K20R, V108I, A158T, F171Y, I178L, Y181C, M184V, H221Y, L283I, L295M, I329V, G379S, K385R, A408V, V435A, R448K, V458I, V467I, L517I, K530R; gp120: T22A, E34K, K35Q, V37A, Y44H, N52S, I56V, N64Y, D85E, Q86E, -107L, N108Y, T110E, -113T, -114L, -115T, -116E, -117Q, -118E, -119E, -120I, -121M, E122-, G124-, E125-, I126-, I133V, I137A, R138I, Y145Q, R150K, I153V, I156M, N158T, S159N, N161D, N167S, T174K, D183E, K203T, N204E, L210I, K212R, I243K, R262T, E265A, N267S, S278N, H280R, -282G, -283I, P285R, Y290Q, E294A, K300Q, Y302H, N306S, T308K, L309Q, N311K, D312N, K316Q, -319S, E320L, K322-, -327N, N328K, K329S, T332K, N334K, S336A, S347M, R351G, T365H, -367I, -368A, -370E, -372G, -373T, -374D, -375N, -377T, -379N, K393R, I395F, N397K, R404Q, A412S, K414R, N420S, T427I, N433G, -436D, L440I, V468I, T471S, Q476P, E481D; gp41: M4V, M7V, F8L, V28A, K77Q, N96R, S101A, E110T, D113E, R133S, I173L, M176I, A189T, I194V, N195K, D217G, G220E, Q229R, K231N, S239N, L244S, A245V, H259L, D272E, K276Q, G277A, L282I, A289L, Q290K, T306S, I309V, A325L, I329F, L330I; nef: G3N, K4Q, S9K, I10L, V11A, G12K, I20M, I43V, R49A, L55I, Q61H, Y81F, S149P, K184R, R191Y, R192-, H193-, I194-, A195-, R196-, E197-, R198-, H199-, P200-, E201-, F202-, Y203-, K204-, D205-; p17: A15L, I19V, K26R, L34I, S72T, V82I, R91K, I94V, R95K, Q105E, K114R, K122R; p2: T8Q, N9H, -12T; p24: V11M, A14N, S41T, I91H, P93A, A177G, E180D, G183N, K203R; p6: T8S, S14P, G16R, F17-, G18-, E19-, I21E, T22I, P23T, S24P, -26S, Y36P, P49L; p7: S4G, R10K, I12T, K26R, K41Q; pro: V15I, I62V, L63P, V77I; rev: E32K, A47E, T62E, T68P, L73F, L78I, Q91E, E94A, R95S, P100N, S103L, H107P, A108E; tat: N12K, K24N, Y47H, R78Q, T82A, E85K; vif: H27Y, V31R, A35T, K36R, G37R, F39I, E45D, D62S, S63K, I66V, R95S, G101S, H110Y, S116A, G126E, H127Q, K157R, L163F, R167Q; vpr: Y15H; vpu: M1I, L3I, L4Y, L5I, V8T, I9V, V10I, F12Y, A15V, L16I, I17T, I21V, V26A, L33W, L34S, K37R, R41Q, E44Q, A66E, V71M, P76H, I79V, N80I"}}}]}, {"name": "F2_NODE_0000006", "node_attrs": {"div": 0.06902, "clade_membership": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["C379A", "T575C", "T587C", "G614A", "A685C", "G1019A", "G1346A", "C1444T", "A1450C", "G1452A", "-1458T", "-1459C", "A1670T", "C1913T", "A2764G", "T2968C", "T3002C", "G3379A", "C3449A", "C4258T", "A4684G", "C4911A", "T4988C", "T5051C", "C5397A", "A5548G", "C5614T", "T5615C", "T6134A", "T6154C", "-6203A", "-6204A", "-6205C", "-6209A", "G6211C", "A6253C", "G6280A", "A6288T", "C6293A", "G6333C", "A6354G", "C6482T", "T6655C", "C6721T", "A6765C", "A6801G", "T6828-", "C6850A", "A6856G", "A6913G", "G6936C", "-6948C", "-6981G", "A7001-", "T7003-", "G7281A", "G7315A", "A7322G", "T7627G", "C7642A", "T7675C", "C7678T", "T7702A", "T7708A", "A7782G", "G7790A", "A7891G", "A8130T", "C8145T", "A8184G", "T8267C", "C8500A", "C8741T", "T8851A", "A8936G", "T8947A", "G8955A"], "RT-p66": ["L452I"], "gp120": ["L94I", "T109I", "Y145F", "L147I", "N160T", "N167S", "N204R", "H280R", "N304T", "K316-", "K322-", "S360T", "G361A", "-375N", "-376G"], "gp41": ["M4I", "M7V", "Y108Q", "D113G", "N160S", "A281V", "Q294R"], "nef": ["L170Q", "R198M", "F202Y"], "p17": ["A15D", "Q117P"], "p2": ["A7V", "N9-", "-12T"], "p24": ["M96I"], "pro": ["P39S", "L63P"], "rev": ["H107R"], "tat": ["N7K"], "vif": ["K33R"], "vpr": ["S94G"], "vpu": ["V7L"]}, "labels": {"aa": "RT-p66: L452I; gp120: L94I, T109I, Y145F, L147I, N160T, N167S, N204R, H280R, N304T, K316-, K322-, S360T, G361A, -375N, -376G; gp41: M4I, M7V, Y108Q, D113G, N160S, A281V, Q294R; nef: L170Q, R198M, F202Y; p17: A15D, Q117P; p2: A7V, N9-, -12T; p24: M96I; pro: P39S, L63P; rev: H107R; tat: N7K; vif: K33R; vpr: S94G; vpu: V7L"}}, "children": [{"name": "AY371158", "node_attrs": {"div": 0.10031, "accession": "AY371158", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CM_0016BBY"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["A380C", "A386G", "G407A", "G428A", "C435A", "G451A", "C531T", "C558A", "A579G", "T583C", "G607A", "G612C", "A666T", "G667A", "C698T", "C767T", "T789C", "A839C", "A869G", "G908A", "C1118T", "A1192G", "T1344C", "-1449G", "A1461G", "A1464C", "G1495A", "T1505C", "G1661A", "T1679C", "C1680A", "A1703G", "A1719G", "G1736A", "-1746A", "-1747C", "-1748T", "A1780G", "A1783T", "T1826G", "A1840G", "G1845A", "A1932G", "A1982G", "A2113G", "T2315C", "A2332G", "A2368G", "G2392T", "C2420T", "G2464A", "C2500T", "A2616G", "A2626G", "A2633G", "A2727G", "G2837A", "C2885T", "T2996C", "C3100T", "G3127A", "A3135G", "A3208G", "G3211A", "T3253C", "G3280A", "G3316A", "G3398A", "A3435G", "A3490G", "T3757A", "G3787A", "G3825A", "G3866A", "C3908T", "G3925A", "A4054G", "C4072T", "C4079T", "G4183A", "G4267A", "A4423G", "T4426C", "A4427T", "T4435C", "G4459A", "C4569T", "A4692C", "A4760T", "G4770T", "G4816A", "A4835T", "C4883T", "T4912A", "G4913A", "C4914T", "T5043C", "A5046G", "A5061G", "G5086A", "G5104A", "G5128A", "G5212A", "A5230G", "C5248T", "T5292C", "A5385G", "C5435A", "A5462G", "G5496C", "A5547C", "C5551T", "A5556C", "A5566G", "T5567A", "A5568C", "C5584T", "C5615A", "C5620A", "G5626T", "A5652G", "A5659G", "T5660C", "T5705A", "A5784G", "-5812C", "-5813T", "-5814T", "-5815T", "-5816T", "-5817T", "-5818A", "-5819T", "C5824-", "C5825-", "T5826-", "T5827-", "T5828-", "T5829-", "A5830-", "T5831-", "G5839A", "T5899A", "A5938G", "T5964C", "T5984C", "C6007T", "A6008G", "G6023T", "A6031C", "G6121A", "A6158C", "C6165G", "-6173A", "-6174A", "-6175T", "A6177T", "C6183A", "T6190C", "A6194C", "T6196G", "A6197C", "C6201A", "C6202T", "-6207T", "T6210C", "A6212C", "A6214G", "-6215G", "-6216A", "-6217A", "-6220G", "G6221C", "G6267A", "A6276G", "A6283T", "T6294C", "G6303A", "T6306A", "G6311A", "A6323G", "T6325A", "T6328A", "T6334G", "A6336C", "T6337A", "A6338T", "G6339C", "A6340C", "T6351C", "A6371G", "A6388G", "C6412T", "C6416T", "T6438A", "A6465G", "C6477A", "A6489C", "G6535A", "C6563T", "G6572A", "A6638G", "T6643A", "G6647A", "T6745C", "A6789C", "C6790A", "G6797A", "A6799T", "A6810C", "T6815G", "A6825T", "T6827-", "-6833A", "-6834C", "A6840T", "A6841T", "C6849A", "A6854G", "A6900G", "A6926G", "T6946C", "-6953T", "-6954T", "-6955A", "-6956C", "-6957T", "-6958T", "-6960A", "-6961C", "-6962A", "-6963C", "-6964A", "-6965A", "-6966C", "-6967A", "-6968A", "-6969T", "-6970G", "-6971G", "-6972A", "-6973T", "-6974A", "-6975A", "-6976T", "-6977A", "-6978A", "-6979T", "-6980G", "-6982T", "A6986-", "A6987-", "T6988-", "A6989-", "A6992-", "-7008C", "C7014T", "C7016A", "A7046G", "A7063G", "T7090A", "T7105C", "A7149G", "T7153G", "A7154G", "A7155C", "T7156A", "G7160A", "G7162C", "T7165A", "-7168C", "-7170T", "G7181A", "G7182T", "T7192G", "C7217T", "G7219A", "A7238C", "G7244C", "G7256A", "A7265T", "A7299G", "G7309A", "G7366A", "G7428A", "A7573G", "T7630A", "A7641G", "C7651G", "A7676G", "G7677A", "A7711G", "A7712G", "T7714G", "A7717G", "A7818G", "A7828C", "A7832G", "G7880A", "A7903T", "C7906T", "C8047T", "A8050G", "A8098G", "T8113A", "G8123A", "A8131G", "G8170T", "A8191G", "G8194A", "A8196T", "T8218C", "A8233G", "A8255G", "G8264A", "T8323C", "G8385A", "C8386A", "T8387G", "A8388G", "A8402G", "C8416T", "G8436A", "C8437A", "A8438G", "T8505A", "G8507A", "A8516G", "G8528A", "A8584T", "T8585C", "T8595G", "C8606T", "T8607C", "T8608A", "A8636T", "T8645C", "A8653G", "G8678A", "C8687T"], "INT": ["S17N", "V31I", "M50I", "T218S", "A265V"], "RT-p51": ["K174R", "I180V", "K211R", "D248N", "K347R", "V435I"], "RT-p66": ["K174R", "I180V", "K211R", "D248N", "K347R", "V435I", "N447S"], "gp120": ["V37A", "Y44H", "N52D", "V57F", "E59D", "N102H", "T104S", "-113N", "-114Q", "-115P", "-116N", "-117N", "-118I", "-119T", "-120L", "-121E", "-123Q", "R138K", "K141R", "K143N", "I147T", "R150K", "L151H", "N157E", "N158K", "S159N", "N161T", "I166T", "I173V", "H188Y", "F195Y", "T208K", "K212T", "E240K", "R262E", "E265K", "Y302H", "D312A", "E315-", "I317-", "A318-", "E320-", "L321-", "-327N", "K329I", "T332K", "N334E", "N349S", "R351G", "N358D", "-367L", "-368L", "-370T", "-372M", "-373D", "-374N", "N378-", "-385T", "T387I", "L388I", "M398V", "N432S", "N433K", "N434A", "-436N", "E438D", "G443I", "D446E", "K462Q", "E464Q", "V468I", "T471S", "K482R"], "gp41": ["S42N", "S125D", "N137E", "K172R", "I177V", "V193I", "N298I", "I318V", "V321I"], "nef": ["A15K", "I16V", "I20M", "A25V", "A32K", "R49G", "S53N", "L55I", "Y81F", "F85V", "E98D", "K104R"], "p17": ["L34I", "R39K", "P66S", "L75I", "V83A", "R91K", "E93Q", "S111Y"], "p2": ["I13S", "M14V"], "p24": ["K154R"], "p6": ["L1I", "S14G", "E34G"], "p7": ["R10K"], "pro": ["L10V", "G16E", "K45R", "I62V"], "rev": ["E11A", "K14T", "Y18T", "P67S", "T68A", "N84D", "C89S", "A108S", "K115E", "E116N"], "tat": ["I3M", "T20N", "K29R", "R40S", "R57S", "T58A", "P59S", "Q60H", "I64D", "P70S"], "vif": ["K36Q", "D62S", "S63K", "R77K", "Q83H", "L109K", "H110Y", "I154V", "I159V", "R167K", "R173K", "R181K"], "vpr": ["I63T"], "vpu": ["L3Y", "L5I", "I18A", "L33Q", "P73L", "D78N"]}, "labels": {"aa": "INT: S17N, V31I, M50I, T218S, A265V; RT-p51: K174R, I180V, K211R, D248N, K347R, V435I; RT-p66: K174R, I180V, K211R, D248N, K347R, V435I, N447S; gp120: V37A, Y44H, N52D, V57F, E59D, N102H, T104S, -113N, -114Q, -115P, -116N, -117N, -118I, -119T, -120L, -121E, -123Q, R138K, K141R, K143N, I147T, R150K, L151H, N157E, N158K, S159N, N161T, I166T, I173V, H188Y, F195Y, T208K, K212T, E240K, R262E, E265K, Y302H, D312A, E315-, I317-, A318-, E320-, L321-, -327N, K329I, T332K, N334E, N349S, R351G, N358D, -367L, -368L, -370T, -372M, -373D, -374N, N378-, -385T, T387I, L388I, M398V, N432S, N433K, N434A, -436N, E438D, G443I, D446E, K462Q, E464Q, V468I, T471S, K482R; gp41: S42N, S125D, N137E, K172R, I177V, V193I, N298I, I318V, V321I; nef: A15K, I16V, I20M, A25V, A32K, R49G, S53N, L55I, Y81F, F85V, E98D, K104R; p17: L34I, R39K, P66S, L75I, V83A, R91K, E93Q, S111Y; p2: I13S, M14V; p24: K154R; p6: L1I, S14G, E34G; p7: R10K; pro: L10V, G16E, K45R, I62V; rev: E11A, K14T, Y18T, P67S, T68A, N84D, C89S, A108S, K115E, E116N; tat: I3M, T20N, K29R, R40S, R57S, T58A, P59S, Q60H, I64D, P70S; vif: K36Q, D62S, S63K, R77K, Q83H, L109K, H110Y, I154V, I159V, R167K, R173K, R181K; vpr: I63T; vpu: L3Y, L5I, I18A, L33Q, P73L, D78N"}}}, {"name": "F2_NODE_0000007", "node_attrs": {"div": 0.07515, "clade_membership": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["G404A", "C462A", "A497G", "G755A", "A774C", "G977A", "C1060A", "A1263T", "A1397G", "G1673A", "T1787C", "G2683A", "G2693A", "G2947A", "G2980A", "C2985T", "T3097C", "G3250A", "G3398T", "G3718A", "A3755G", "A3760C", "C4123T", "T4441C", "G4764A", "C4789G", "T4967G", "T5147C", "T5206C", "T5630C", "G5737A", "G5806A", "A5958G", "A6020T", "T6151A", "C6180A", "A6195G", "C6202G", "T6213C", "T6322C", "A6330G", "C6412A", "A6639G", "A6648C", "C6758T", "A6822G", "G6905A", "A6952T", "-6982G", "-6984C", "-6985C", "-6990G", "-6991C", "-6994T", "A7032G", "A7094C", "A7113G", "C7127A", "A7689G", "G7765A", "G8117A", "G8144A", "G8487A", "A8537G", "T8546C", "A8656G"], "RT-p51": ["A200T", "A297V", "V435L"], "RT-p66": ["A200T", "A297V", "V435L", "T554A"], "gp120": ["K35R", "I56L", "T112E", "E265A", "K393R", "K414Q", "N420S", "L425I"], "gp41": ["D129G", "D272N", "K276I", "V281I"], "nef": ["H89F", "K105R"], "p17": ["V82I"], "p2": ["-10S"], "p24": ["I15L", "T110N", "T178S"], "rev": ["G90E", "E94D"], "vif": ["E60K", "T68S", "H127Q"], "vpr": ["Y15H"], "vpu": ["L3S", "V8A"]}, "labels": {"aa": "RT-p51: A200T, A297V, V435L; RT-p66: A200T, A297V, V435L, T554A; gp120: K35R, I56L, T112E, E265A, K393R, K414Q, N420S, L425I; gp41: D129G, D272N, K276I, V281I; nef: H89F, K105R; p17: V82I; p2: -10S; p24: I15L, T110N, T178S; rev: G90E, E94D; vif: E60K, T68S, H127Q; vpr: Y15H; vpu: L3S, V8A"}}, "children": [{"name": "MN153483", "node_attrs": {"div": 0.10790999999999999, "accession": "MN153483", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 2008.0}, "Strain_name": {"value": "08CMBDSH132"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["T213C", "G215A", "-305A", "A360C", "G378A", "G401A", "G410A", "A417C", "G424A", "C496T", "G519A", "G520A", "T549A", "A604G", "A606G", "G619C", "C623T", "G667A", "A676C", "A678G", "C679T", "-704A", "-714G", "-715G", "C767T", 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"G94N"], "vpu": ["S2P", "L5Q", "I6N", "V10A", "I18L", "I21V", "R38K"]}, "labels": {"aa": "INT: M50T, E96D; RT-p51: T39M, I135V, A173E, D256E, A288T; RT-p66: T39M, I135V, A173E, D256E, A288T; gp120: T21S, N71D, H77N, E78A, I94M, N102D, V106A, -107N, N108G, I109D, E112G, -113T, -114T, -115S, -116S, -117N, -118T, -119D, -120P, E122-, I126L, I137M, K143R, I147V, R150K, V154I, N158T, T160D, S181T, I187L, F195Y, T208I, A253T, T255N, F260L, V288A, E294A, E315Q, -316M, A318V, -319G, L321F, -322K, -323R, -324Q, -325Y, K329I, I331V, T332E, V343I, A361N, -367E, -368M, -370S, -372I, -373N, -374G, N378-, -385T, A408T, P409S, G430-, G431-, N432-, N433-, N434-, N435-, T437-, L440D, K462Q, K479E, E481K, K482R; gp41: I4L, S125N, N137D, T163S, M176I, S212R, L249I, D262N, V321I; nef: A25V, A50F, S53K, E59K, A60E, D63N, L76V, S88G, E98D, Y135F, K182Q, R196K; p17: S9R, D15K, K28Q, R30K, T54M, G62K, S72T, Q90R, R91G, R95T, S111N, K114T, T115V, -124G; p2: V7M; p24: Q50S, P92A, I230V; p6: E19G, -26Q, K27E, E29Y, Q30P, K31-, D32-, K33-, E34-, L35-, Y36-, Q52T; p7: R34K; pro: T12N, L19I, S39A, I62V, I64L; rev: S8D, E11L, L13K, K14A, A15-, K30A, E54A, P67H, R80K, S99D; tat: V4I, K29Q, Q35P, T39I, R40K, Q54-, Q76R; vif: K36R, E45D, R50K, H73Q, D78E, Q83H, L109M, A137T, V170A; vpr: E37V, I84T, R85Q, G94N; vpu: S2P, L5Q, I6N, V10A, I18L, I21V, R38K"}}}, {"name": "AF377956", "node_attrs": {"div": 0.10006, "accession": "AF377956", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 1997.0}, "Strain_name": {"value": "CM53657"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["G344A", "G354C", "A380T", "G382T", "C435A", "C496A", "A571T", "T572C", "G612A", "A618G", "G771T", "T1001C", "T1058C", "T1064A", "C1330T", "C1342G", "C1350A", "A1391G", "A1412G", "-1449T", "A1464T", "T1501A", "A1619G", "G1687A", "G1718A", "G1736A", "-1746A", "-1747C", "-1748T", "C1782A", "A1783T", "G1845A", "T1864A", "A1932G", "A1933G", "T1978C", "T1999C", "A2020T", "G2032A", "C2105T", "C2195T", "G2422A", "A2512G", "C2613T", "C2635T", "G2704A", "A2727G", "T2930C", "T2935C", "A2959G", "T2983A", "G2995A", "C3002A", "T3068C", "A3080G", "A3162G", "A3265G", "G3280A", "C3376T", "T3445C", "T3497C", "G3679A", "A3684G", "C3857T", "A3874C", "T3962C", "C3995T", "A4012G", "C4021T", "T4042C", "A4054G", "A4076C", "C4210T", "G4303A", "G4549A", "C4667T", "T4742C", "G4865A", "C4902T", "A4911T", "C4914T", "T4919C", "T5245C", "G5276C", "G5290A", "T5292C", "C5333T", "A5370C", "A5385G", "T5403G", "C5412T", "A5431G", "T5454C", "C5482T", "C5551T", "A5563G", "G5575A", "T5600C", "T5624C", "G5626A", "T5642A", "C5653A", "A5656C", "A5685G", "G5729A", "G5963A", "A6030G", "A6131C", "C6160T", "-6173C", "-6174C", "-6175T", "A6176G", "A6177T", "G6179A", "T6181C", "A6188G", "C6189G", "T6190G", "T6193C", "T6196C", "T6199C", "A6200C", "C6201T", "A6203G", "C6205T", "-6207A", "A6214C", "-6215C", "-6216T", "-6217G", "-6220A", "G6267A", "A6268C", "A6273T", "G6274T", "T6288C", "A6304G", "A6336G", "A6338G", "G6339A", "A6350C", "A6371G", "A6464G", "C6487T", "A6489G", "G6532A", "A6573G", "A6575G", "A6581G", "A6602T", "A6669C", "A6675T", "A6684G", "A6691G", "A6714G", "T6735C", "A6737C", "G6788A", "C6790A", "A6800G", "G6802A", "G6809A", "T6815G", "A6818C", "T6827C", "-6828T", "-6829T", "T6835-", "A6842T", "A6854G", "A6855C", "A6932G", "C6933T", "A6937T", "A6947G", "-6953A", "-6954A", "-6955C", "-6956A", "-6957T", "-6958G", "-6960C", "-6961T", "-6962A", "-6963A", "-6964T", "-6965G", "-6966C", "-6967A", "-6968A", "-6969T", "-6970G", "-6971A", "-6972A", "-6973C", "-6974A", "-6983T", "A6989G", "-6993T", "A7007-", "T7009-", "C7079G", "T7114C", "A7147G", "T7150A", "A7158C", "T7159C", "G7160A", "G7162T", "C7164A", "-7168C", "-7170C", "G7269A", "T7325C", "A7375G", "G7428A", "C7561A", "G7628A", "A7642G", "G7701A", "G7773A", "C7801T", "A7820T", "T7877G", "A7918G", "T7932C", "C7941G", "G7947A", "C7954A", "A7955C", "G7997A", "A7998C", "G8008C", "-8120A", "-8121A", "-8122G", "G8125A", "G8126C", "G8127T", "C8129A", "T8159G", "T8182C", "C8189A", "A8207G", "G8208A", "A8233G", "T8321G", "T8322C", "T8323A", "T8371A", "G8385A", "G8424C", "A8425C", "A8481C", "T8483G", "C8491A", "A8500G", "C8510A", "C8606T", "T8789G", "G8834A", "T8923G", "C8964T", "T8972A", "-8974T", "-9015T", "T9058C", "T9074G", "T9097C", "A9132G"], "INT": ["I101L"], "RT-p51": ["P4S", "A173V", "K211R", "L303M", "I329V", "K356R"], "RT-p66": ["P4S", "A173V", "K211R", "L303M", "I329V", "K356R", "S468P", "K530R"], "gp120": ["V37I", "E59G", "K93Q", "V106L", "-107D", "N111L", "-123Q", "R138N", "K140I", "F145S", "I153V", "N161S", "S162E", "I166L", "I173V", "R204E", "K212R", "E240G", "N241D", "I243V", "T250S", "N272T", "N274I", "K277R", "I279M", "Q287R", "E294T", "I295V", "D312K", "-316G", "I317V", "-319S", "E320H", "T330S", "N334A", "T360V", "T365A", "-370M", "-372N", "-373A", "-374M", "G376R", "-377S", "-379G", "-380I", "P409A", "N432K", "N435T", "-436N", "T437N", "E438D", "I439T", "R472K"], "gp41": ["F8L", "I24M", "S42N", "E109N", "G113E", "R133K", "S157N", "I173L", "S192A", "I210T", "P213R", "G215E", "D217E", "D232T", "R273K", "G277R", "W286G", "L296I", "S302D", "F340A"], "nef": ["I10K", "A15T", "E28P", "N47Q", "A50D", "D149E", "I194R"], "p17": ["V7L", "W16L", "L34I", "T54K", "Y79F", "E93K", "R95G"], "p2": ["A11T", "T12S", "M14L"], "p24": ["A14S", "T200I", "A204G", "P207T"], "p6": ["S3N", "L35M"], "p7": ["I12N"], "pro": ["G16E", "K45R"], "rev": ["Q36T", "R50N", "E54Q", "D94N", "R95K", "S99N", "V104G", "S112P", "T114N"], "tat": ["I3M", "D9E", "K19E", "T58A", "P59S", "K63E", "D67N", "S75P", "R78G", "D80N", "T82N"], "vif": ["H110Y"], "vpr": ["E58Q", "I63T", "I89L"], "vpu": ["I6T", "L7I", "F12Y", "L16I", "I17L", "R41K", "E44K", "V71M"]}, "labels": {"aa": "INT: I101L; RT-p51: P4S, A173V, K211R, L303M, I329V, K356R; RT-p66: P4S, A173V, K211R, L303M, I329V, K356R, S468P, K530R; gp120: V37I, E59G, K93Q, V106L, -107D, N111L, -123Q, R138N, K140I, F145S, I153V, N161S, S162E, I166L, I173V, R204E, K212R, E240G, N241D, I243V, T250S, N272T, N274I, K277R, I279M, Q287R, E294T, I295V, D312K, -316G, I317V, -319S, E320H, T330S, N334A, T360V, T365A, -370M, -372N, -373A, -374M, G376R, -377S, -379G, -380I, P409A, N432K, N435T, -436N, T437N, E438D, I439T, R472K; gp41: F8L, I24M, S42N, E109N, G113E, R133K, S157N, I173L, S192A, I210T, P213R, G215E, D217E, D232T, R273K, G277R, W286G, L296I, S302D, F340A; nef: I10K, A15T, E28P, N47Q, A50D, D149E, I194R; p17: V7L, W16L, L34I, T54K, Y79F, E93K, R95G; p2: A11T, T12S, M14L; p24: A14S, T200I, A204G, P207T; p6: S3N, L35M; p7: I12N; pro: G16E, K45R; rev: Q36T, R50N, E54Q, D94N, R95K, S99N, V104G, S112P, T114N; tat: I3M, D9E, K19E, T58A, P59S, K63E, D67N, S75P, R78G, D80N, T82N; vif: H110Y; vpr: E58Q, I63T, I89L; vpu: I6T, L7I, F12Y, L16I, I17L, R41K, E44K, V71M"}}}]}]}]}, {"name": "F2_NODE_0000008", "node_attrs": {"div": 0.060809999999999996, "clade_membership": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["A615G", "A869G", "C1440A", "G1687A", "A1819G", "G4549A", "C5412A", "A5566G", "T5636C", "A6020T", "-6209C", "-6217A", "A6330G", "G6797A", "A6934T", "G6935A", "A7151G", "G8125A", "G8127T", "A8128G", "C8412-", "G8415-", "C8416-", "T8607C", "T8608A", "G8914T", "G8971A"], "gp120": ["I56L", "-107K", "I153V", "-380T", "N433D"], "nef": ["R191L"], "p17": ["I94V"], "p2": ["Q6K"], "p6": ["S3N", "L35Q", "N47S"], "tat": ["N12K", "I64V"], "vpu": ["V10A"]}, "labels": {"aa": "gp120: I56L, -107K, I153V, -380T, N433D; nef: R191L; p17: I94V; p2: Q6K; p6: S3N, L35Q, N47S; tat: N12K, I64V; vpu: V10A"}}, "children": [{"name": "F2_NODE_0000009", "node_attrs": {"div": 0.06726, "clade_membership": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["C510A", "A1449G", "A1450G", "-1455G", "-1456C", "A1475G", "A1543G", "A1587C", "A1733G", "A1982G", "T2087C", "C2589T", "A2727G", "A3193G", "G3250A", "G3391A", "G3398A", "G3467A", "C3559T", "G4636A", "A4692G", "A4693C", "A5421G", "A5560G", "A5563G", "A5751G", "A6009G", "C6110G", "A6112G", "C6160T", "-6173A", "-6175T", "T6436C", "A6684G", "A6714G", "-6834A", "T6863G", "-6948A", "A6949C", "-6957T", "-6960A", "-6961T", "-6963A", "-6964C", "-6965A", "-6968C", "-6970G", "-6973T", "-6990A", "-6991C", "-6993C", "-6997A", "-6998G", "-7000A", "-7005A", "-7006C", "G7065A", "A7163T", "A7289C", "C7397A", "A7399C", "A7590C", "A7669G", "T7702A", "G8008C", "G8076A", "-8120A", "-8121A", "-8122G", "G8126C", "C8129A", "C8220G", "C8294A", "G8329A", "T8594C", "T8947A"], "RT-p51": ["T165I", "K211R", "V435I"], "RT-p66": ["T165I", "K211R", "V435I", "V458I"], "gp120": ["N52S", "Q86E", "-115S", "D241K", "K277R", "Q287R", "Y302H", "S337A", "K479Q"], "gp41": ["Q32N", "N96T", "Y108Q", "R258H", "R273K", "G277R", "H331N"], "nef": ["F202Y"], "p17": ["Q59K"], "p2": ["N9G", "-10A"], "p7": ["K26R", "K41Q"], "pro": ["I62V"], "rev": ["E54Q", "R95K"], "tat": ["S62G", "K63E"], "vif": ["R17K", "K36A"]}, "labels": {"aa": "RT-p51: T165I, K211R, V435I; RT-p66: T165I, K211R, V435I, V458I; gp120: N52S, Q86E, -115S, D241K, K277R, Q287R, Y302H, S337A, K479Q; gp41: Q32N, N96T, Y108Q, R258H, R273K, G277R, H331N; nef: F202Y; p17: Q59K; p2: N9G, -10A; p7: K26R, K41Q; pro: I62V; rev: E54Q, R95K; tat: S62G, K63E; vif: R17K, K36A"}}, "children": [{"name": "KU749420", "node_attrs": {"div": 0.11773, "accession": "KU749420", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMF211CM025"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["C200G", "T201C", "A301G", "-305A", "G354A", "G401A", "G407A", "A419G", "G424A", "C435T", "G438A", "T485G", "A513T", "A533C", "T570C", "A576G", "C577T", "T583C", "T587G", "G608A", "A659G", "G660A", "A666T", "C672A", "A678G", "G692A", "G703-", "-715A", "C767T", "G771C", "T773C", "T777A", "A810G", "A833G", "A839C", "T861G", "C897T", "T978A", "T979C", "A1002G", "T1003C", "A1049G", "C1094T", "A1208G", "C1243T", "C1261G", "A1263T", "A1271T", "G1278A", "G1279A", "G1313A", "G1328A", "T1344C", "A1359T", "T1385C", "G1394A", "G1438C", "C1478T", "T1502A", "T1547C", "G1552A", "T1616G", "A1618G", "G1661A", "T1682A", "-1743A", "-1744C", "-1745C", "C1775G", "A1776G", "A1780G", "A1804G", "T1826A", "A1839G", "A1840G", "G1861A", "C1865T", "A1932G", "G1968A", "C1985G", "C1986T", "T1997C", "G1998A", "G2042A", "A2056G", "T2080G", "T2104C", "C2206A", "A2210G", "G2215A", "A2241G", "C2263T", "G2447A", "A2459G", "G2464A", "G2473A", "A2518G", "C2575T", "C2596T", "G2602T", "C2605T", "A2627T", "T2668A", "G2693A", "T2735C", "T2737C", "G2842A", "G2919A", "C2927T", "G2995A", "A3031G", "A3037G", "A3058C", "T3068C", "A3079G", "A3205G", "T3349C", "T3433C", "A3435G", "G3643A", "C3652T", "C3691T", "T3695A", "T3742C", "A3744G", "G3766A", "A3772C", "T3779C", "T3844C", "G3925A", "T3946C", "C4021A", "T4024C", "T4085C", "A4105G", "C4132T", "T4135C", "G4150A", "T4153C", "A4189G", "T4192C", "C4258T", "T4441C", "A4522T", "C4525T", "A4555G", "C4569T", "A4684G", "T4703C", "T4716C", "G4735A", "A4736G", "G4737A", "G4764A", "A4774C", "A4775C", "A4806C", "A4835T", "G4871A", "A4986G", "A4993C", "C5006T", "A5007C", "A5036G", "A5059G", "G5060A", "T5062G", "C5084T", "G5086A", "C5160T", "T5182C", "G5213A", "A5214T", "T5239G", "A5246G", "C5250A", "G5269A", "T5286C", "G5290A", "T5292C", "A5312G", "T5336G", "T5371C", "A5400G", "T5424C", "A5444C", "A5461C", "G5495C", "A5548G", "A5557G", "C5559T", "G5575A", "T5582C", "A5587G", "T5617G", "T5618A", "C5653T", "G5673A", "A5685G", "A5699G", "A5743T", "C5792A", "G5861A", "C5862A", "T5866A", "A5911G", "C5916A", "C5917A", "A5947G", "A5956C", "A5958C", "T5984C", "C6007T", "T6020G", "G6023C", "T6024A", "T6025C", "G6028A", "G6029C", "A6030C", "T6046C", "A6065G", "T6100C", "C6116T", "G6133A", "A6158G", "C6165A", "-6174A", "A6177T", "G6179A", "C6183A", "A6191C", "T6193A", "C6201A", "C6202T", "-6203G", "-6204A", "-6205T", "-6207C", "C6208T", "G6211A", "A6214G", "-6215G", "-6216A", "G6218A", "-6220T", "G6221A", "T6242A", "A6275G", "A6276C", "T6287C", "T6295G", "A6323G", "A6324G", "A6329G", "A6338G", "G6339A", "G6391A", "T6403A", "C6441T", "A6450G", "T6460G", "G6466T", "A6471C", "C6477T", "C6482A", "G6490C", "A6544G", "C6563T", "T6577A", "A6583G", "T6598C", "G6605A", "G6611T", "C6612T", "A6613G", "A6616G", "C6642T", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6713A", "A6715G", "A6723T", "G6732A", "T6745C", "A6765C", "G6773A", "T6787G", "C6790A", "A6797G", "A6800G", "G6806A", "C6807T", "T6815C", "A6822G", "-6829T", "-6833A", "A6840G", "A6844C", "A6847C", "C6849T", "A6854G", "A6856G", "C6858A", "T6860C", "C6864T", "A6881G", "G6894T", "C6925T", "C6933G", "T6934C", "-6953C", "-6954T", "-6955G", "-6956T", "-6958T", "-6962A", "-6966C", "-6967A", "-6969A", "-6971C", "-6972T", "-6994A", "-6995G", "-6996A", "-6999G", "A7001G", "-7002G", "T7003G", "-7004A", "A7007-", "T7009-", "C7012T", "A7037T", "C7064A", "A7095G", "A7107T", "A7149C", "G7151-", "A7152-", "T7153-", "A7157G", "G7160A", "A7161C", "C7172T", "T7192C", "C7201T", "A7246G", "A7261C", "C7267T", "A7279G", "A7306T", "A7313C", "G7315A", "A7322C", "A7426G", "G7428A", "C7429T", "T7433C", "A7508G", "G7513A", "A7523C", "G7524A", "A7525T", "C7561A", "T7604G", "A7621G", "T7627G", "G7640A", "A7667G", "C7692T", "A7710G", "T7714G", "A7721G", "A7734T", "G7735T", "C7742A", "C7747A", "C7755A", "C7791A", "C7801T", "T7805C", "C7813T", "G7862A", "A7891G", "G7915A", "T7930C", "A7931C", "A7937G", "G7938T", "C7939A", "A8032C", "C8033T", "T8035G", "C8037T", "C8065T", "A8079T", "A8099C", "G8117A", "A8130C", "C8146T", "T8159G", "T8164C", "C8167T", "C8169T", "A8172T", "T8176C", "G8180A", "A8204G", "A8254G", "T8266G", "C8291A", "C8293T", "G8304C", "T8348C", "G8349A", "G8354A", "G8356T", "G8365A", "G8368A", "T8369A", "C8382T", "G8385A", "-8412G", "C8413A", "-8415A", "-8416G", "A8425C", "C8477T", "G8488C", "G8489A", "C8504T", "C8514G", "A8516G", "G8528A", "G8534C", "T8585C", "A8655C", "A8666C", "T8675C", "C8687T", "A8701T", "T8786G", "A8823G", "T8829A", "T8832C", "T8835C", "T8843C", "G8871T", "A8874G", "A8887G", "G8905A", "G8915T", "T8923C", "C8951T", "G8955A", "C8966T", "A8967G", "G8968A", "-8974C", "G8991A", "-9015A", "C9039T", "T9084G", "G9085T", "C9133T", "A9135G"], "INT": ["M50I", "A265V"], "RT-p51": ["T39A", "K49R", "V118I", "K122E", "E169D", "I178L", "A200T", "F214L", "R275K", "H278Y"], "RT-p66": ["T39A", "K49R", "V118I", "K122E", "E169D", "I178L", "A200T", "F214L", "R275K", "H278Y", "N447S", "S534T", "K550R"], "gp120": ["A3K", "D4E", "T21K", "E34D", "K35T", "Y44H", "L56V", "V57H", "E59P", "N71D", "N102D", "T104N", "N108T", "T109S", "T110N", "-113Q", "-114N", "-116N", "-117D", "-118T", "-119L", "-120M", "-121E", "E122N", "-123K", "S130T", "K141A", "Y145H", "N157D", "S159I", "N161G", "D183E", "A196V", "K199R", "D202E", "N206T", "T208I", "L210I", "K212N", "I243M", "D251N", "A253L", "R262K", "S263F", "S278G", "Y290F", "A291T", "T292D", "G293A", "E294I", "N304T", "G307R", "N311K", "D312E", "K316E", "I317V", "A318I", "-319E", "-323S", "-324H", "-325F", "-327N", "K329R", "N334E", "P335Q", "S336P", "A337V", "I343V", "S347I", "R351G", "G361R", "T365N", "-367L", "-368F", "-370N", "-371T", "-372Q", "-373L", "-379N", "-381E", "-382G", "-383G", "-384N", "I395F", "R404K", "K414R", "N418I", "N434T", "N435S", "-436T", "T437N", "L440F", "Q476R"], "gp41": ["M4L", "M7L", "S42N", "I69V", "R74H", "S101A", "D113N", "K122E", "T130I", "E136G", "N137K", "N140D", "K144I", "Q147K", "D148E", "A151E", "S163D", "V187I", "I210L", "S212V", "A245V", "H259L", "I266L", "D272N", "K276T", "W286G", "A289V", "Q290L", "G293S", "I301V", "T306S", "L330I", "R334T"], "nef": ["G3S", "W5L", "S8N", "S9K", "P14S", "A15T", "A25V", "E28A", "R49A", "L58V", "E63D", "E64G", "K105Q", "E108D", "Y120F", "N161D", "C163S", "D177Y", "R178G", "K182R", "S188H", "I194T", "R198K"], "p17": ["V7I", "R30K", "V35I", "I60L", "Y79H", "T81V", "V83A", "D109N", "S111C", "Q113K", "T115A", "G123E"], "p2": ["S5T"], "p24": ["A14P", "S16T", "I27V", "S44A", "L83T", "I91A", "T171I", "A177G", "T178S", "E180D", "G183N", "T210S"], "p6": ["D32E", "K33E", "E34G", "K42R"], "p7": ["R29K", "E51G"], "pro": ["L10I", "K14R", "K45R", "R57K", "L63V", "C67H", "V82I"], "rev": ["A15V", "Y23H", "Y28P", "K30S", "P31T", "T62L", "C63G", "L73F", "N84T", "G90E", "E94D", "P100S", "V104G", "S106P", "H107C", "G111E"], "tat": ["N23T", "K29Q", "R40T", "T58A", "S61G", "D67N", "V69A", "K71E", "L74S", "A77Y"], "vif": ["K33R", "Y44H", "R50K", "V51I", "E60K", "T74P", "Q83H", "N134D", "Q136P", "K141Q", "K158R", "I159R", "R167K", "H192Y"], "vpr": ["T19I", "E37M", "H45Q", "N48D", "T49N", "I61T", "I63T", "I70V", "H77Q", "I89T"], "vpu": ["L4E", "K31R", "I46L", "A65E"]}, "labels": {"aa": "INT: M50I, A265V; RT-p51: T39A, K49R, V118I, K122E, E169D, I178L, A200T, F214L, R275K, H278Y; RT-p66: T39A, K49R, V118I, K122E, E169D, I178L, A200T, F214L, R275K, H278Y, N447S, S534T, K550R; gp120: A3K, D4E, T21K, E34D, K35T, Y44H, L56V, V57H, E59P, N71D, N102D, T104N, N108T, T109S, T110N, -113Q, -114N, -116N, -117D, -118T, -119L, -120M, -121E, E122N, -123K, S130T, K141A, Y145H, N157D, S159I, N161G, D183E, A196V, K199R, D202E, N206T, T208I, L210I, K212N, I243M, D251N, A253L, R262K, S263F, S278G, Y290F, A291T, T292D, G293A, E294I, N304T, G307R, N311K, D312E, K316E, I317V, A318I, -319E, -323S, -324H, -325F, -327N, K329R, N334E, P335Q, S336P, A337V, I343V, S347I, R351G, G361R, T365N, -367L, -368F, -370N, -371T, -372Q, -373L, -379N, -381E, -382G, -383G, -384N, I395F, R404K, K414R, N418I, N434T, N435S, -436T, T437N, L440F, Q476R; gp41: M4L, M7L, S42N, I69V, R74H, S101A, D113N, K122E, T130I, E136G, N137K, N140D, K144I, Q147K, D148E, A151E, S163D, V187I, I210L, S212V, A245V, H259L, I266L, D272N, K276T, W286G, A289V, Q290L, G293S, I301V, T306S, L330I, R334T; nef: G3S, W5L, S8N, S9K, P14S, A15T, A25V, E28A, R49A, L58V, E63D, E64G, K105Q, E108D, Y120F, N161D, C163S, D177Y, R178G, K182R, S188H, I194T, R198K; p17: V7I, R30K, V35I, I60L, Y79H, T81V, V83A, D109N, S111C, Q113K, T115A, G123E; p2: S5T; p24: A14P, S16T, I27V, S44A, L83T, I91A, T171I, A177G, T178S, E180D, G183N, T210S; p6: D32E, K33E, E34G, K42R; p7: R29K, E51G; pro: L10I, K14R, K45R, R57K, L63V, C67H, V82I; rev: A15V, Y23H, Y28P, K30S, P31T, T62L, C63G, L73F, N84T, G90E, E94D, P100S, V104G, S106P, H107C, G111E; tat: N23T, K29Q, R40T, T58A, S61G, D67N, V69A, K71E, L74S, A77Y; vif: K33R, Y44H, R50K, V51I, E60K, T74P, Q83H, N134D, Q136P, K141Q, K158R, I159R, R167K, H192Y; vpr: T19I, E37M, H45Q, N48D, T49N, I61T, I63T, I70V, H77Q, I89T; vpu: L4E, K31R, I46L, A65E"}}}, {"name": "AJ249237", "node_attrs": {"div": 0.09975, "accession": "AJ249237", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 1995.0}, "Strain_name": {"value": "95CM_MP257"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["G335A", "C435A", "G459A", "A509G", "A548G", "A554G", "G557A", "T560G", "A571T", "T575C", "G579A", "G607A", "A666C", "G667A", "G690A", "-704G", "-705G", "-706T", "-707C", "-708A", "-709G", "-710T", "-711A", "-712A", "-713A", "-714G", "-715G", "G738C", "G743A", "G771A", "C772G", "A774C", "T1028A", "T1052C", "T1262C", "A1265G", "C1292A", "A1349G", "A1391T", "G1404A", "C1514T", "T1574C", "A1619G", "T1646G", "A1670C", "G1673A", "-1746G", "-1747C", "-1748T", "T1785G", "A1786T", "C1795T", "C1825A", "T1826G", "G1846A", "T1948A", "A1951G", "C1985T", "G2008A", "T2101A", "A2221G", "G2287A", "A2290G", "A2332G", "A2406G", "G2461A", "A2482G", "G2612A", "C2613A", "A2615G", "C2644T", "T2654C", "A2713G", "C2806T", "G2951A", "A2977T", "G2980A", "T3002C", "G3094A", "T3097C", "T3118C", "A3162G", "G3168A", "A3218G", "C3294T", "A3304G", "G3316A", "C3319T", "C3394T", "A3490G", "T3544G", "T3550C", "T3644A", "A3684G", "G3796A", "A3808G", "A3814G", "T3856C", "G3997A", "C4042T", "A4064G", "C4138T", "A4145G", "G4267A", "A4427T", "A4475G", "G4553A", "A4573G", "T4655C", "G4677A", "C4757T", "G4770T", "A4781C", "G4785A", "T4820C", "G4856A", "A4937C", "T4967G", "T4976C", "G5057A", "G5075A", "T5171C", "A5383G", "A5385G", "A5431G", "T5439G", "T5451C", "C5539A", "C5584T", "T5602C", "T5618C", "T5642A", "C5651T", "A5652G", "A5659C", "C5704A", "G5706A", "G5747T", "C5769A", "A5805G", "T5827C", "A5856G", "C5869G", "A5958G", "C6007A", "A6022G", "G6028T", "A6030G", "A6038T", "T6046A", "G6079A", "A6168C", "G6170A", "T6172C", "-6174T", "C6180T", "T6181C", "T6184C", "A6185T", "A6186C", "A6188T", "G6198C", "T6199C", "-6203T", "-6204T", "-6205G", "A6206C", "-6207T", "C6208A", "C6209A", "A6212T", "-6215T", "-6216C", "A6217G", "-6220G", "G6224-", "G6225-", "G6226-", "G6227-", "A6228-", "A6229-", "A6232G", "A6275C", "G6280A", "G6303A", "C6318A", "T6322C", "T6328C", "G6333A", "A6336C", "A6340T", "A6371C", "A6388C", "T6403C", "G6458A", "A6465C", "G6466A", "G6481A", "C6482T", "A6489G", "C6496T", "G6535A", "T6577G", "A6580G", "A6602T", "G6611A", "T6637A", "A6640T", "T6641C", "G6647A", "G6693A", "T6747C", "A6771G", "G6774A", "C6777A", "T6780A", "A6785T", "A6798T", "G6803A", "G6809A", "A6810C", "A6821G", "C6826A", "T6828-", "A6845G", "A6848G", "C6849G", "C6850G", "A6854C", "C6874T", "G6905A", "G6936T", "A6937T", "A6947C", "-6953A", "-6954G", "-6955A", "-6956G", "-6958A", "-6962G", "-6966T", "-6967T", "-6969T", "-6971T", "-6972C", "-6974A", "-6975A", "-6976T", "A6989C", "-6994G", "-6995A", "-6996G", "-6999A", "-7002A", "-7004G", "-7008C", "A7066G", "T7090C", "G7132A", "G7137T", "T7147G", "A7148G", "T7150G", "A7152G", "T7153A", "A7154-", "A7155-", "T7156-", "T7165C", "G7219A", "G7269A", "G7281A", "A7348C", "A7420G", "G7441A", "A7447T", "A7583C", "C7585A", "C7597T", "T7604C", "C7605T", "T7627A", "A7641G", "C7642A", "C7651A", "C7658G", "G7660A", "A7676G", "A7713G", "C7723T", "G7773A", "G7790T", "A7800G", "C7801A", "A7817G", "G7835A", "G7841A", "G7868A", "A7921G", "G7938A", "C7940T", "C7954A", "G8006A", "C8048T", "A8050C", "C8051A", "C8063G", "C8078T", "A8079G", "G8087A", "C8145T", "C8213T", "T8215G", "A8216G", "C8221A", "T8232C", "G8245A", "G8264A", "A8288G", "T8321C", "C8406-", "G8407-", "A8408-", "A8409-", "C8410-", "C8411-", "C8413-", "T8414-", "A8417-", "G8432A", "A8461G", "G8476A", "G8534A", "G8535-", "A8536-", "A8537-", "G8590C", "T8595C", "C8597G", "C8606T", "A8653G", "C8669T", "C8676T", "A8739C", "T8740C", "A8746T", "C8867T", "A8870C", "G8875A", "A8892C", "A8912G", "C8921T", "A8935G"], "INT": ["T97A", "T124A", "T218S", "I234V", "V260I"], "RT-p51": ["K104R", "A173K", "K174E", "A286T", "K356R", "R358K", "I375V", "T400I"], "RT-p66": ["K104R", "A173K", "K174E", "A286T", "K356R", "R358K", "I375V", "T400I", "H483Q", "L517I", "K530R"], "gp120": ["N1S", "N5K", "K35R", "E59G", "T62S", "N64K", "D105-", "V106-", "N108A", "T109I", "T110I", "T112V", "-113T", "-114S", "-121S", "G124-", "I126M", "K141Q", "R150K", "P155Q", "N161T", "I173L", "D202N", "N204T", "K212R", "I242M", "T250S", "A253T", "N261K", "R262N", "S263P", "E265K", "I298T", "N306S", "G307E", "T308K", "L309Q", "N311Y", "E315I", "-319T", "L321F", "-323D", "-324Q", "-325Y", "I331V", "I332G", "N334Q", "S360T", "G361I", "T365H", "-367R", "-368V", "-370D", "-371I", "-372L", "-373S", "-374N", "-379H", "-381R", "-382E", "-383N", "-384D", "-385T", "R404Q", "R428I", "N432E", "D433G", "N435-", "-436E", "T437S", "R472K"], "gp41": ["T94P", "S101L", "D113G", "Q119E", "S125G", "N137S", "S157N", "N166R", "K172E", "V178I", "G180S", "A189T", "S212N", "P213S", "D217E", "V235I", "L249F", "L254V", "H259C", "D262N", "A281V", "N305D", "T306R", "V310A", "V321I", "I329V", "F340L"], "nef": ["R22A", "T23A", "P24E", "A25G", "A26-", "A27-", "E28-", "G29-", "H40R", "S45N", "R49G", "E65-", "G83A", "F85L", "K104R", "I133P", "Y135F", "E176D", "R178K", "K184Q", "S188R"], "p1": ["I5M"], "p17": ["L34I", "E42K", "Y79F", "V82I", "R91K", "S111H", "A119T", "-124V", "-125S", "-126K", "-127G"], "p24": ["V3L", "A14S", "I15L", "D187E", "G225S"], "p6": ["T22A", "Y36V", "T39I", "P49Q"], "pro": ["L10V", "L63S"], "rev": ["S8R", "P31L", "Q36K", "R53H", "P67L", "T68Q", "P72R", "P77L", "R80K", "H107R"], "tat": ["I3V", "K19E", "P70S", "A77T", "T82K"], "vif": ["V31I", "D62S", "S63K", "V67I", "E117D", "H127Q"], "vpr": ["N93S", "S94G"], "vpu": ["L4S", "F12Y", "A15V", "I18L", "L33I", "R47I", "F74L"]}, "labels": {"aa": "INT: T97A, T124A, T218S, I234V, V260I; RT-p51: K104R, A173K, K174E, A286T, K356R, R358K, I375V, T400I; RT-p66: K104R, A173K, K174E, A286T, K356R, R358K, I375V, T400I, H483Q, L517I, K530R; gp120: N1S, N5K, K35R, E59G, T62S, N64K, D105-, V106-, N108A, T109I, T110I, T112V, -113T, -114S, -121S, G124-, I126M, K141Q, R150K, P155Q, N161T, I173L, D202N, N204T, K212R, I242M, T250S, A253T, N261K, R262N, S263P, E265K, I298T, N306S, G307E, T308K, L309Q, N311Y, E315I, -319T, L321F, -323D, -324Q, -325Y, I331V, I332G, N334Q, S360T, G361I, T365H, -367R, -368V, -370D, -371I, -372L, -373S, -374N, -379H, -381R, -382E, -383N, -384D, -385T, R404Q, R428I, N432E, D433G, N435-, -436E, T437S, R472K; gp41: T94P, S101L, D113G, Q119E, S125G, N137S, S157N, N166R, K172E, V178I, G180S, A189T, S212N, P213S, D217E, V235I, L249F, L254V, H259C, D262N, A281V, N305D, T306R, V310A, V321I, I329V, F340L; nef: R22A, T23A, P24E, A25G, A26-, A27-, E28-, G29-, H40R, S45N, R49G, E65-, G83A, F85L, K104R, I133P, Y135F, E176D, R178K, K184Q, S188R; p1: I5M; p17: L34I, E42K, Y79F, V82I, R91K, S111H, A119T, -124V, -125S, -126K, -127G; p24: V3L, A14S, I15L, D187E, G225S; p6: T22A, Y36V, T39I, P49Q; pro: L10V, L63S; rev: S8R, P31L, Q36K, R53H, P67L, T68Q, P72R, P77L, R80K, H107R; tat: I3V, K19E, P70S, A77T, T82K; vif: V31I, D62S, S63K, V67I, E117D, H127Q; vpr: N93S, S94G; vpu: L4S, F12Y, A15V, I18L, L33I, R47I, F74L"}}}]}, {"name": "F2_NODE_0000010", "node_attrs": {"div": 0.06416999999999999, "clade_membership": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["G410A", "G491A", "G1567A", "-1746A", "-1747C", "G1793A", "C2195T", "G2693A", "C2839A", "G3825A", "T5051C", "G5215A", "C5237T", "A5448C", "T6184A", "A6186G", "A6192T", "G6490A", "A6575G", "C6618A", "C6758T", "C6807G", "A6856T", "A7032G", "A7094G", "G8522A", "G8531A", "C8904A"], "INT": ["S17N"], "RT-p51": ["A200T", "D248E"], "RT-p66": ["A200T", "D248E"], "gp120": ["T255N", "A318-", "K393R"], "gp41": ["R133S"], "p7": ["R34K"], "tat": ["K24N"], "vif": ["K122N"], "vpr": ["H45Y"]}, "labels": {"aa": "INT: S17N; RT-p51: A200T, D248E; RT-p66: A200T, D248E; gp120: T255N, A318-, K393R; gp41: R133S; p7: R34K; tat: K24N; vif: K122N; vpr: H45Y"}}, "children": [{"name": "AJ249236", "node_attrs": {"div": 0.11091999999999999, "accession": "AJ249236", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 1995.0}, "Strain_name": {"value": "95CM_MP255"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["G400A", "A418G", "G428A", "G455A", "G480A", "A509G", "C510A", "C525T", "C531T", "T567C", "T572C", "A576G", "G614T", "C662T", "A677G", "A678G", "C679A", "G687A", "C688A", "A689G", "G703-", "-715A", "A740G", "C747A", "A774C", "C830T", "C890T", "C947T", "A959G", "A998G", "T1013G", "G1077A", "A1089G", "T1100C", "G1256A", "A1271G", "G1278A", "G1279A", "C1292A", "G1311T", "C1331A", "T1422C", "A1450G", "G1452A", "-1455G", "-1456C", "G1495A", "A1543G", "A1622G", "A1660G", "G1673A", "G1720A", "A1733-", "G1734-", "A1735-", "G1736A", "A1740G", "T1741G", "A1742G", "-1743A", "-1744T", "-1745A", "-1748C", "A1774G", "A1776G", "T1785G", "A1786C", "A1794G", "C1795T", "A1832G", "A1839G", "C1865T", "T1903C", "G1912A", "A1918G", "C1960T", "A2029G", "G2032A", "A2063C", "A2075C", "T2116A", "A2154G", "G2473A", "A2482G", "A2579T", "G2822C", "G2878A", "G2921A", "G2926A", "A2937G", "A2992G", "A3019G", "C3023A", "A3064G", "C3100T", "G3127A", "C3131T", "C3140T", "G3154A", "G3168A", "G3211A", "G3230A", "A3238G", "G3251A", "C3294T", "G3391A", "T3399C", "T3497C", "T3505C", "T3544C", "C3622G", "A3625T", "G3631A", "A3637G", "C3756G", "G3781A", "A3880G", "G3891A", "C3940T", "A4078C", "A4105G", "A4196G", "G4268A", "C4396T", "A4475G", "A4495G", "A4573G", "T4655C", "A4658G", "A4684G", "G4735A", "C4761T", "G4785A", "A4835C", "G4888A", "A4915G", "A4952T", "T5003C", "C5034T", "A5036G", "G5057A", "G5069A", "G5128A", "C5186A", "T5206C", "G5217A", "G5218T", "G5257A", "G5267A", "A5268G", "G5279A", "A5284G", "A5370C", "A5383G", "C5397A", "C5398A", "A5412C", "A5431G", "T5451C", "G5463A", "T5475C", "A5480C", "C5482T", "C5492T", "A5493G", "G5495A", "A5557G", "G5566A", "T5611C", "C5614T", "T5615C", "A5623G", "T5624C", "T5630G", "G5635T", "T5641C", "G5662A", "A5689T", "G5861A", "A5867G", "A5908G", "G5912C", "A5926G", "A5956C", "A5957C", "A5958C", "G5962A", "A6022G", "C6026T", "A6030G", "T6046C", "C6052T", "A6059G", "C6076T", "G6086C", "A6087T", "C6116T", "G6121A", "T6135C", "-6173A", "-6174A", "-6175T", "A6177T", "T6178C", "G6179A", "T6181C", "C6183T", "A6184G", "A6188G", "C6189A", "T6190C", "A6197G", "T6199C", "-6207G", "T6213A", "A6214G", "-6215G", "-6216A", "-6220T", "G6221C", "C6238T", "A6251G", "A6263C", "A6265G", "G6267A", "A6279G", "G6284C", "T6287C", "T6289G", "T6301C", "T6315A", "T6325G", "G6339T", "G6345A", "A6354G", "C6363T", "C6364G", "C6370T", "A6371G", "G6394A", "C6412T", "T6427C", "T6438A", "A6465G", "T6483C", "A6488G", "T6493G", "A6525G", "G6535A", "T6551C", "G6569C", "G6593A", "G6611A", "A6639G", "G6647A", "A6648T", "A6653G", "C6660G", "A6686G", "T6688G", "G6716A", "A6723T", "T6733A", "A6742G", "G6773A", "C6790A", "G6802T", "G6806A", "A6810G", "C6823A", "-6829C", "T6835-", "T6838C", "A6839T", "A6840T", "A6841C", "A6842T", "A6845G", "A6848G", "C6857T", "A6862C", "C6874T", "C6875G", "A6889G", "G6905A", "G6924A", "A6932T", "T6934A", "A6935G", "A6947G", "-6948A", "A6959-", "-6977G", "-6978A", "-6979G", "-6980G", "-6981T", "-6982G", "-6983G", "-6984C", "-6985T", "-6990A", "-6991C", "-6993C", "-6994A", "-6995A", "-6996A", "-6997C", "-6998G", "-6999A", "-7000A", "-7002A", "A7007-", "T7009-", "T7018C", "A7037T", "G7058A", "C7064A", "C7078T", "C7089A", "T7090A", "T7099C", "A7107C", "G7145A", "T7150G", "A7155T", "A7157G", "T7159C", "A7161G", "C7164A", "T7165A", "C7170T", "C7171T", "G7181A", "G7182T", "G7186A", "G7219A", "A7239G", "C7250G", "G7269A", "A7289C", "A7296C", "A7322G", "T7325C", "C7328T", "T7370G", "A7375C", "T7386C", "T7433C", "C7498T", "G7534A", "C7561A", "G7594A", "C7596G", "T7603C", "C7625T", "A7633C", "C7645T", "A7676G", "G7677A", "G7688A", "C7690A", "T7702C", "A7712G", "A7717G", "A7720G", "A7734G", "C7747A", "G7759A", "C7762T", "G7765A", "A7782G", "G7790T", "A7880G", "A7883G", "G7938A", "A7989C", "A7995G", "G8006A", "G8030C", "G8036A", "C8063T", "T8064C", "C8065T", "C8092A", "A8093C", "-8120A", "-8121G", "-8122G", "C8129A", "A8132G", "G8168A", "T8174C", "A8184G", "C8189T", "G8212A", "C8213T", "A8216G", "C8223T", "T8232C", "A8288G", "T8290C", "T8321G", "T8322C", "G8330T", "C8331T", "A8342G", "G8385A", "C8386A", "A8388G", "A8402G", "C8406-", "G8407-", "A8408-", "A8409-", "C8410-", "C8411-", "C8413-", "T8414-", "A8417-", "A8435G", "G8436A", "C8437A", "T8444A", "T8456C", "T8486C", "G8487A", "T8492A", "A8516G", "G8534A", "G8535-", "A8536-", "A8537-", "A8573G", "G8590C", "T8595G", "C8606T", "A8666G", "C8699T", "T8757C", "G8799A", "T8831C", "G8846A", "C8867T", "G8876A", "A8887G", "G8888A", "A8922G", "A8935G", "C8948T", "A8952C"], "INT": ["S39N", "I141V", "V165I", "I234V"], "RT-p51": ["K20R", "S162C", "A243P", "V276I", "K281R", "L310I", "H346Y", "R358K", "G379S", "V386I", "T400I", "V435A"], "RT-p66": ["K20R", "S162C", "A243P", "V276I", "K281R", "L310I", "H346Y", "R358K", "G379S", "V386I", "T400I", "V435A", "S468P", "H509Q", "T554S"], "gp120": ["A3T", "N5D", "A20P", "E34D", "K35P", "E59G", "K69E", "E78L", "L94S", "V106L", "N108E", "T109D", "T110Q", "N111-", "T112-", "E122-", "I133V", "I137L", "R138K", "K142R", "E144Q", "Y145Q", "V154E", "N157K", "N160S", "S162I", "R164K", "N167S", "T170M", "I173V", "F195Y", "N204R", "L210P", "K212E", "N213K", "K224R", "E239Q", "E247K", "A253T", "E265I", "N267D", "T269R", "S278G", "H280R", "A288T", "Y290F", "G307R", "D312E", "E315K", "K316-", "I317-", "E320-", "L321-", "K322-", "K329V", "T330S", "I331G", "I332E", "N334K", "P335K", "L341V", "C357Y", "T365E", "N369-", "-375E", "-376V", "-377A", "-379N", "-381N", "-382E", "-383N", "I395F", "V402I", "A412E", "K414E", "N418T", "G431S", "N432K", "N434I", "N435D", "-436G", "T437K", "T439I", "G443I", "K462R", "L466V", "R472K", "Q476R", "K479Q", "E481A"], "gp41": ["M7V", "F8L", "L9F", "S23A", "V28A", "P98R", "E110D", "S125D", "D129K", "N137D", "K144R", "D148E", "N160S", "I193V", "I194V", "S212N", "Q229P", "K231R", "V235M", "A243P", "A245T", "L254S", "F263L", "I264L", "L275V", "A289T", "Y291H", "Q294R", "L304F", "N305D", "T307I", "V310A", "I329V", "F340A", "A343F"], "nef": ["A15N", "I16V", "I20M", "R22A", "T23A", "P24E", "A25G", "A26-", "A27-", "E28-", "G29-", "A32K", "E65-", "G83A", "F85V", "F139L", "V153I", "M168I", "K182R", "I194V", "K204Q"], "p1": ["K10R"], "p17": ["R22K", "K28R", "G49S", "Q59K", "P66S", "T81A", "E93D", "T115E", "A118K", "G123E"], "p2": ["N9S", "-10T"], "p24": ["L6I", "I15L", "A116T", "S120G", "G183N", "D187E", "A194S"], "p6": ["S14N", "E19-", "I21G", "T22I", "P23T", "S24P", "P25S", "-26P", "D32G", "K33E", "Y36A", "T39V"], "p7": ["R10K", "K26R"], "pro": ["T12A", "K14R", "L63P", "M89L", "I93L"], "rev": ["R53H", "S61T", "C63Y", "P72L", "L73F", "H82T", "T93S", "V109A", "T114I"], "tat": ["I3V", "N7K", "L8I", "K12N", "K19E", "Q35P", "T39M", "R40K", "S61G", "V64I", "A77T"], "vif": ["K33R", "R50K", "V67I", "Q83H", "G101D", "H110R", "R181K"], "vpr": ["H28N", "W38Y", "E55R", "A59T", "I60M", "I89L", "N93S"], "vpu": ["S2P", "L3S", "I6A", "V8G", "A10S", "F12L", "A19T", "I28L"]}, "labels": {"aa": "INT: S39N, I141V, V165I, I234V; RT-p51: K20R, S162C, A243P, V276I, K281R, L310I, H346Y, R358K, G379S, V386I, T400I, V435A; RT-p66: K20R, S162C, A243P, V276I, K281R, L310I, H346Y, R358K, G379S, V386I, T400I, V435A, S468P, H509Q, T554S; gp120: A3T, N5D, A20P, E34D, K35P, E59G, K69E, E78L, L94S, V106L, N108E, T109D, T110Q, N111-, T112-, E122-, I133V, I137L, R138K, K142R, E144Q, Y145Q, V154E, N157K, N160S, S162I, R164K, N167S, T170M, I173V, F195Y, N204R, L210P, K212E, N213K, K224R, E239Q, E247K, A253T, E265I, N267D, T269R, S278G, H280R, A288T, Y290F, G307R, D312E, E315K, K316-, I317-, E320-, L321-, K322-, K329V, T330S, I331G, I332E, N334K, P335K, L341V, C357Y, T365E, N369-, -375E, -376V, -377A, -379N, -381N, -382E, -383N, I395F, V402I, A412E, K414E, N418T, G431S, N432K, N434I, N435D, -436G, T437K, T439I, G443I, K462R, L466V, R472K, Q476R, K479Q, E481A; gp41: M7V, F8L, L9F, S23A, V28A, P98R, E110D, S125D, D129K, N137D, K144R, D148E, N160S, I193V, I194V, S212N, Q229P, K231R, V235M, A243P, A245T, L254S, F263L, I264L, L275V, A289T, Y291H, Q294R, L304F, N305D, T307I, V310A, I329V, F340A, A343F; nef: A15N, I16V, I20M, R22A, T23A, P24E, A25G, A26-, A27-, E28-, G29-, A32K, E65-, G83A, F85V, F139L, V153I, M168I, K182R, I194V, K204Q; p1: K10R; p17: R22K, K28R, G49S, Q59K, P66S, T81A, E93D, T115E, A118K, G123E; p2: N9S, -10T; p24: L6I, I15L, A116T, S120G, G183N, D187E, A194S; p6: S14N, E19-, I21G, T22I, P23T, S24P, P25S, -26P, D32G, K33E, Y36A, T39V; p7: R10K, K26R; pro: T12A, K14R, L63P, M89L, I93L; rev: R53H, S61T, C63Y, P72L, L73F, H82T, T93S, V109A, T114I; tat: I3V, N7K, L8I, K12N, K19E, Q35P, T39M, R40K, S61G, V64I, A77T; vif: K33R, R50K, V67I, Q83H, G101D, H110R, R181K; vpr: H28N, W38Y, E55R, A59T, I60M, I89L, N93S; vpu: S2P, L3S, I6A, V8G, A10S, F12L, A19T, I28L"}}}, {"name": "F2_NODE_0000011", "node_attrs": {"div": 0.07164999999999999, "clade_membership": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["A563G", "C672A", "T978G", "-1459C", "T1541A", "A1619G", "-1748T", "C1986T", "C2467T", "G2560A", "C2960T", "T3002A", "G3442A", "G3787A", "T3856C", "G3907A", "G3952A", "T4441C", "G5167A", "T5260C", "C5478T", "A5687T", "A5784G", "G5902T", "T5973C", "C6180A", "C6202A", "-6203G", "G6211C", "T6213C", "A6214C", "-6216T", "-6220A", "A6320C", "A6336C", "C6347T", "T6460G", "G6466T", "A6471C", "C6477A", "C6717T", "G6788A", "G6803A", "G6812A", "A6825T", "-6832A", "T6835A", "A6855G", "G6936A", "A6937G", "T6946C", "A6952T", "-6955G", "-6960A", "-7004G", "-7005G", "-7006C", "T7015C", "A7095T", "G7160A", "G7162T", "G7168C", "G7281A", "A7440G", "C7463A", "A7508C", "A7553C", "A7891G", "A7918G", "A8002G", "A8032G", "A8396G", "-8412C", "-8416T", "C8514T", "T8582C", "C8676T", "G8822A", "C8840T", "G8905C", "G8929A", "G8955A"], "RT-p51": ["L303M"], "RT-p66": ["L303M"], "gp120": ["V40A", "I156L", "S159N", "D202E", "N206T", "T208K", "A288V", "E320K", "R351G", "G361K", "K414V"], "gp41": ["K46R", "L54M", "I69L", "I84L"], "nef": ["A25V", "S188T", "R196K"], "p24": ["L83V"], "rev": ["I52V", "T62A", "H107R"]}, "labels": {"aa": "RT-p51: L303M; RT-p66: L303M; gp120: V40A, I156L, S159N, D202E, N206T, T208K, A288V, E320K, R351G, G361K, K414V; gp41: K46R, L54M, I69L, I84L; nef: A25V, S188T, R196K; p24: L83V; rev: I52V, T62A, H107R"}}, "children": [{"name": "MH705144", "node_attrs": {"div": 0.10402999999999998, "accession": "MH705144", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "A1699"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["A21G", "A301G", "-305A", "A380T", "G395A", "G413A", "A416G", "G428A", "A447G", "T486C", "C525T", "T549A", "T575C", "G579A", "T583C", "G607A", "G615A", "G651A", "C662T", "A663C", "A665G", "A666-", "G667-", "T668-", "G671A", "A676C", "A678C", "C679A", "G690C", "G692A", "A774C", "A809G", "A810G", "A839G", "A1115G", "A1192G", "A1205G", "C1245T", "C1316T", "G1404A", "-1458T", "A1474G", "A1476G", "A1656C", "A1670G", "G1673A", "T1676C", "C1680G", "A1691G", "G1709A", "A1733G", "A1786C", "C1788G", "T1826G", "G1879A", "A1918G", "A1926G", "A2014C", "A2140G", "A2374G", "A2524G", "A2545T", "A2551C", "G2567T", "A2578G", "A2593G", "T2597C", "T2608C", "G2686A", "A2722T", "C2975A", "T3052C", "A3058C", "A3080G", "G3085A", "G3154A", "G3168A", "A3202T", "G3206A", "T3358C", "G3398T", "G3438A", "A3454G", "G3467A", "G3477A", "A3490G", "A3651G", "A3684G", "G3766A", "A3768G", "A3805G", "T3865A", "A3961G", "A3985G", "T4039G", "C4042T", "A4064G", "A4189G", "A4195C", "G4263C", "A4427T", "T4476G", "A4692C", "A4720C", "G4770T", "G4856A", "G4864A", "G4887A", "G4888A", "C4911T", "T4922C", "T4928C", "T4932G", "A4951C", "T4967G", "T4985C", "A5021G", "T5028C", "A5046C", "A5049C", "G5086A", "T5147C", "G5176A", "G5213A", "A5215T", "T5228C", "G5236A", "A5268C", "A5282C", "G5290A", "T5336G", "A5355C", "A5383C", "A5385G", "A5444C", "G5496A", "C5552A", "T5630G", "C5636T", "A5699G", "G5737A", "A5762G", "G5794A", "G5861A", "G5939A", "T5951C", "T5953G", "A5958G", "A5959C", "C5982T", "A6009G", "T6020A", "G6029A", "A6044G", "T6091C", "A6136G", "-6173A", "-6174A", "-6175T", "T6178G", "T6181A", "G6186C", "T6192C", "T6193C", "A6194C", "A6195C", "T6196G", "A6197G", "A6200C", "-6204T", "-6205T", "-6207A", "C6209T", "-6215C", "A6217G", "A6230T", "A6279G", "A6323G", "G6333C", "A6340G", "A6350C", "T6361C", "A6449C", "C6482G", "T6483A", "A6573G", "T6607C", "A6639G", "A6640G", "G6644A", "T6655G", "C6660T", "C6670T", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6733A", "T6745C", "A6764G", "C6766A", "G6774C", "C6779T", "A6789C", "A6799T", "A6800G", "T6808A", "A6810G", "T6815G", "A6821G", "C6823A", "T6827C", "-6829T", "-6833A", "-6834T", "A6839C", "C6849T", "A6854C", "T6856G", "A6900T", "A6913G", "C6933G", "-6948C", "-6953T", "-6954G", "-6956C", "-6957T", "-6958A", "-6961T", "-6990A", "-6991A", "-6993C", "-6994G", "-6995G", "-6996A", "-6997A", "-6998C", "-6999A", "-7000C", "-7002A", "-7008T", "C7014A", "A7021G", "A7037T", "C7064A", "T7090A", "A7093G", "C7108A", "A7112G", "G7151A", "A7152C", "A7154G", "A7155G", "T7165C", "C7170T", "G7181A", "G7182C", "G7219A", "A7241C", "G7291A", "A7313C", "G7366A", "C7393T", "A7398T", "G7502T", "T7627A", "G7628A", "C7642G", "A7668G", "A7676G", "C7747A", "G7769A", "A7782G", "G7790T", "G7846A", "G7871A", "G7915A", "C7954A", "A8098G", "G8109C", "C8112T", "G8114C", "G8123A", "A8125G", "T8127G", "G8128A", "A8130T", "A8131G", "C8145T", "C8156T", "C8169T", "A8258C", "T8290C", "G8317A", "-8415A", "G8454A", "A8455G", "G8476A", "T8483C", "G8488T", "G8490A", "C8494A", "T8498C", "A8531T", "T8546C", "T8594C", "T8595A", "A8653G", "C8687T", "G8717T", "A8754T", "C8755G", "T8831C", "C8873A", "A8874G", "A8892C", "A8909G", "A8922C", "A8932T", "A8934C", "T8947A", "C8966T", "A8967G", "G8968A", "A8978-", "-9015T", "A9018C", "G9019A", "C9078G", "A9106G", "T9108C", "A9132G", "C9181T"], "INT": ["T97A", "G163A", "T218S", "I234S"], "RT-p51": ["A158S", "P294T", "I329V", "R358K", "V371I", "V435L"], "RT-p66": ["A158S", "P294T", "I329V", "R358K", "V371I", "V435L", "R448K", "V458I", "R461K", "N519S", "K530R", "K558R"], "gp120": ["A3T", "D29N", "Y33Q", "K35S", "T43I", "N52S", "L56I", "E59K", "N64D", "N108E", "N111T", "-113P", "-114G", "-115P", "-116V", "-117N", "-118F", "-119T", "-120L", "-121E", "-123D", "I126L", "K142R", "N157D", "N158D", "N160I", "I166L", "K199Q", "L210E", "E240G", "V264I", "N267K", "T269I", "S278G", "N304E", "G307A", "D312T", "E315N", "K316E", "-318G", "-319G", "N334R", "N349I", "-367W", "-368L", "-379K", "-381E", "-382H", "-383N", "-384G", "-385I", "T387N", "I395F", "N418K", "N420D", "D433T", "N434G", "-436N", "E438G", "T439I", "G443T", "I463L"], "gp41": ["M4L", "Q32L", "A67S", "Y108Q", "D109N", "D113E", "K122R", "S125G", "D148E", "D156N", "N160S", "V190M", "D217E", "R269T", "T270I", "V271L", "A281V", "A289V", "I319L"], "nef": ["V25I", "D38S", "S45N", "R49V", "A50T", "T51N", "E63D", "F85I", "K104R", "Q125H", "T138C", "D177E", "R178G", "K184Q", "I194L", "E197V", "R198Q", "F202Y"], "p1": ["N9H"], "p17": ["S38G", "S72T", "V82I", "V83A", "R91K", "V94I", "E106K", "K110Q", "S111Q", "Q112K", "Q113T", "K114Q", "T115-", "A119P"], "p2": ["-12S"], "p24": ["I15L", "I27V", "K154R", "G225S"], "p6": ["L1V", "Y36S"], "p7": ["K3R", "S4G"], "pro": ["L10V", "K43R"], "rev": ["L13I", "Q36K", "N84D", "E87D", "C89S", "S103F"], "tat": ["I3L", "N23T", "P59H", "T82K"], "vif": ["K36Q", "E45A", "D62S", "S63K", "R93K", "G101N", "S116A", "N122T", "H127Q", "I154L", "T155P", "R167K"], "vpr": ["Y15H", "E37N", "E55A", "I60L", "H77Q", "I84L", "N93T", "S94G"], "vpu": ["V8G", "A10V", "Y27F", "K31R", "E44K", "D52G", "A66T"]}, "labels": {"aa": "INT: T97A, G163A, T218S, I234S; RT-p51: A158S, P294T, I329V, R358K, V371I, V435L; RT-p66: A158S, P294T, I329V, R358K, V371I, V435L, R448K, V458I, R461K, N519S, K530R, K558R; gp120: A3T, D29N, Y33Q, K35S, T43I, N52S, L56I, E59K, N64D, N108E, N111T, -113P, -114G, -115P, -116V, -117N, -118F, -119T, -120L, -121E, -123D, I126L, K142R, N157D, N158D, N160I, I166L, K199Q, L210E, E240G, V264I, N267K, T269I, S278G, N304E, G307A, D312T, E315N, K316E, -318G, -319G, N334R, N349I, -367W, -368L, -379K, -381E, -382H, -383N, -384G, -385I, T387N, I395F, N418K, N420D, D433T, N434G, -436N, E438G, T439I, G443T, I463L; gp41: M4L, Q32L, A67S, Y108Q, D109N, D113E, K122R, S125G, D148E, D156N, N160S, V190M, D217E, R269T, T270I, V271L, A281V, A289V, I319L; nef: V25I, D38S, S45N, R49V, A50T, T51N, E63D, F85I, K104R, Q125H, T138C, D177E, R178G, K184Q, I194L, E197V, R198Q, F202Y; p1: N9H; p17: S38G, S72T, V82I, V83A, R91K, V94I, E106K, K110Q, S111Q, Q112K, Q113T, K114Q, T115-, A119P; p2: -12S; p24: I15L, I27V, K154R, G225S; p6: L1V, Y36S; p7: K3R, S4G; pro: L10V, K43R; rev: L13I, Q36K, N84D, E87D, C89S, S103F; tat: I3L, N23T, P59H, T82K; vif: K36Q, E45A, D62S, S63K, R93K, G101N, S116A, N122T, H127Q, I154L, T155P, R167K; vpr: Y15H, E37N, E55A, I60L, H77Q, I84L, N93T, S94G; vpu: V8G, A10V, Y27F, K31R, E44K, D52G, A66T"}}}, {"name": "JX140673", "node_attrs": {"div": 0.11567999999999999, "accession": "JX140673", "clade_membership": {"value": "F2"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "DEMF210CM007"}, "LANL_subtype": {"value": "F2"}}, "branch_attrs": {"mutations": {"nuc": ["A256-", "A263G", "G279A", "-280G", "-305T", "G317A", "G404A", "A417C", "A500T", "G519T", "G520T", "A527G", "A571T", "A576G", "G608A", "G614A", "G619A", "A686G", "G752A", "T773C", "A815G", "G818A", "A891G", "C892T", "C902T", "C926T", "T992G", "A998G", "G1019A", "A1022G", "T1028C", "A1034G", "G1067A", "A1073G", "A1079C", "A1115C", "C1136T", "C1178T", "A1277G", "G1346A", "A1419G", "A1440C", "C1444T", "A1448C", "G1452A", "-1458A", "T1502A", "A1528T", "A1532G", "A1580G", "A1644C", "T1653C", "A1657G", "A1659-", "A1660-", "G1661-", "A1670C", "C1730T", "A1781G", "A1783C", "T1790C", "T1797G", "T1864G", "A2059G", "T2062C", "T2087C", "C2149G", "A2154G", "C2206T", "G2215A", "A2224G", "A2241G", "T2315C", "A2329G", "T2369C", "T2386G", "C2452T", "G2470A", "A2591C", "A2593T", "A2715G", "A2727G", "A2818G", "G2822C", "A2830G", "C2845T", "T2873C", "G2914A", "T2930A", "A2932C", "G2957A", "C2975T", "G3016A", "A3088G", "C3100T", "G3142A", "G3166A", "A3205T", "A3249G", "T3328C", "G3391C", "C3405T", "A3439G", "T3526A", "T3544G", "T3566C", "A3621T", "A3736G", "T3784C", "G3796A", "A3819T", "G3859A", "A3868G", "T3928A", "T3962C", "T3977C", "A4036G", "G4060A", "A4076C", "A4087G", "C4132T", "A4145G", "T4149C", "G4150A", "T4153G", "A4264G", "A4285G", "A4391T", "C4396T", "T4455A", "A4495G", "A4531G", "A4555G", "G4622A", "A4632C", "G4687A", "A4721G", "A4725C", "C4754T", "G4764A", "T4776C", "T4805C", "A4814G", "T4827C", "A4835C", "C4898T", "A4952T", "C4955T", "A4956C", "C4965T", "A4997G", "A5048T", "G5069A", "T5188G", "T5228A", "A5230G", "C5251A", "A5293G", "A5305G", "T5339C", "A5410C", "A5412G", "A5431G", "C5448T", "T5454C", "T5483G", "G5484T", "G5496C", "A5548T", "A5594G", "G5599T", "A5601-", "T5602C", "A5607G", "T5618C", "G5619T", "C5620A", "C5651T", "A5685G", "T5686A", "G5729A", "A5748G", "A5751G", "G5806A", "G5839A", "A5921G", "C5922T", "T5929C", "T5941A", "A5965G", "A6065G", "C6076T", "C6083A", "T6096C", "A6130G", "T6134C", "A6159G", "T6171C", "A6188G", "A6191G", "T6196C", "T6199C", "-6204A", "-6205A", "A6206G", "-6207C", "C6208T", "T6210C", "C6211T", "A6212C", "-6215A", "A6222C", "A6223T", "G6224C", "G6225C", "G6226T", "G6227C", "A6228C", "A6229C", "A6232G", "C6247T", "A6251G", "T6252C", "A6263G", "G6267A", "G6274A", "A6292G", "T6322C", "A6329G", "G6330A", "A6338G", "G6339A", "C6364T", "T6403G", "A6415C", "G6451A", "T6466C", "C6487T", "A6489G", "C6501T", "T6523A", "C6601T", "G6605T", "A6606C", "T6607G", "G6611T", "G6631A", "T6632C", "A6638G", "A6648C", "T6658C", "C6666T", "C6667T", "A6668G", "A6669G", "A6734G", "T6735A", "G6754A", "A6759T", "A6765T", "T6780A", "T6787G", "A6798C", "G6806A", "G6807A", "T6808G", "A6818C", "C6826A", "T6827A", "T6828A", "-6829G", "-6830A", "-6831T", "-6833C", "-6834A", "A6840T", "A6844T", "C6850T", "T6863G", "C6875T", "A6910G", "C6925T", "A6926G", "A6932G", "C6933A", "A6935C", "-6948T", "C6951G", "-6953C", "-6954A", "-6956T", "-6957C", "-6958T", "A6959G", "-6961G", "-6962A", "-6963A", "-6964G", "-6965G", "-6966C", "-6967G", "-6968G", "-6969G", "-6970A", "-6971A", "-6972A", "-6973T", "-6974A", "-6975A", "-6976T", "A6986-", "A6987-", "T6988-", "A6989-", "A6992-", "A7001-", "T7003-", "-7008G", "A7013T", "C7014T", "T7024C", "G7056A", "A7057G", "A7101G", "A7113G", "A7126G", "C7127T", "G7132A", "T7147G", "A7148G", "T7150A", "A7158G", "A7161G", "T7162C", "G7197A", "C7201T", "A7255T", "A7258G", "G7291C", "G7315A", "A7322G", "G7333A", "G7343A", "C7392T", "G7519A", "A7527T", "A7590G", "C7625T", "T7630G", "G7660A", "A7687C", "C7690A", "A7693C", "G7777A", "T7792C", "A7799C", "T7805C", "A7852G", "T7877G", "T7888G", "G7890A", "A8029C", "C8037T", "A8050G", "C8051A", "G8055A", "G8117A", "-8120A", "-8121G", "-8122G", "G8126C", "C8129G", "G8141A", "T8164C", "T8174C", "G8180A", "A8216G", "A8242G", "A8263C", "G8276A", "C8277T", "A8288G", "C8293T", "T8320C", "G8329A", "T8369C", "G8385A", "G8404A", "G8407A", "-8415G", "G8429A", "A8435G", "C8460T", "G8487A", "G8488A", "C8491A", "T8492A", "G8499C", "G8528T", "T8558C", "A8584T", "C8607T", "A8608T", "C8702T", "T8740C", "A8746T", "C8775T", "A8804G", "A8824C", "G8834A", "A8837G", "G8846A", "T8851A", "G8861A", "A8887T", "C8913A", "A8954G", "G8970A", "T8972C", "-8974G", "G8991A", "C8992A", "T8993A", "C9004T", "G9008-", "-9009A", "-9015G", "C9039T", "T9046-"], "INT": ["Y15F", "H51Q", "I101L", "T124A", "V125A", "T206S", "F227Y", "G283S", "D286A"], "RT-p51": ["K20R", "K49R", "K166H", "E207G", "K211R", "A243P", "L279I", "A288T", "P294S", "E370D", "K385R", "E432D", "A437V"], "RT-p66": ["K20R", "K49R", "K166H", "E207G", "K211R", "A243P", "L279I", "A288T", "P294S", "E370D", "K385R", "E432D", "A437V", "H483Q", "S491P", "H509L"], "gp120": ["T23V", "D29E", "N71D", "H77N", "I81T", "N102S", "V106A", "K107-", "T109D", "N111S", "T112A", "-113V", "-114N", "-115S", "-116T", "-117E", "-118A", "-119P", "-120P", "-121I", "-123A", "G124P", "E125P", "I126M", "I133A", "I137V", "R138K", "N158A", "N160A", "D183E", "K212R", "T216I", "D251S", "A253S", "F260L", "R262E", "E265A", "P271L", "N272G", "H280R", "Y302F", "N304I", "L309Q", "N311K", "D312N", "E315T", "-318K", "-319E", "L321F", "K322Q", "-323N", "-324L", "-325K", "-326I", "-327Q", "K329I", "I331N", "N334S", "S337A", "N358D", "S360D", "K361Q", "T365S", "T366-", "N369-", "N378-", "T380-", "T387F", "R401K", "Q416R", "N420S", "N432E", "N435S", "-436S", "E438D", "R448K", "K479N"], "gp41": ["M4I", "M7V", "A14T", "A30V", "Y75F", "N96S", "D109E", "D129E", "S163A", "N166H", "S192A", "N195K", "R196K", "L242F", "A245V", "S251N", "D272N", "K276E", "G277R", "E280K", "Y291H", "G293S", "N305D", "E320D", "A325I", "I329V"], "nef": ["A15T", "R21K", "R22Q", "H40Y", "R49K", "A50E", "A53P", "E62D", "Y81F", "H89F", "I133T", "Y135F", "N161T", "M168I", "L170Q", "M173I", "K182M", "L191M", "R198K"], "p1": ["I5L", "S8P", "N9S", "K10-"], "p17": ["K28Q", "E55D", "G62L", "Y79F", "T81A", "R95K", "Q113K"], "p2": ["K6Q", "A7V", "-10T", "A11-", "-12T"], "p24": ["T54V", "H87Q", "M96I", "E128D", "I230V"], "p6": ["Q35P", "S40A"], "p7": ["E21V"], "rev": ["E11D", "S61R", "T68E", "G90E", "E94G", "R95K", "G98E", "S106P", "V109A", "G111E"], "tat": ["K12Q", "K19E", "L36R", "R40S", "T58S"], "vif": ["M16L", "R34K", "E60K", "Q83H", "I124L", "H127Y"], "vpr": ["H28Q", "L42M", "I63M"], "vpu": ["L4S", "L5I", "A15V", "Y27I", "R41K", "V71M", "D78N"]}, "labels": {"aa": "INT: Y15F, H51Q, I101L, T124A, V125A, T206S, F227Y, G283S, D286A; RT-p51: K20R, K49R, K166H, E207G, K211R, A243P, L279I, A288T, P294S, E370D, K385R, E432D, A437V; RT-p66: K20R, K49R, K166H, E207G, K211R, A243P, L279I, A288T, P294S, E370D, K385R, E432D, A437V, H483Q, S491P, H509L; gp120: T23V, D29E, N71D, H77N, I81T, N102S, V106A, K107-, T109D, N111S, T112A, -113V, -114N, -115S, -116T, -117E, -118A, -119P, -120P, -121I, -123A, G124P, E125P, I126M, I133A, I137V, R138K, N158A, N160A, D183E, K212R, T216I, D251S, A253S, F260L, R262E, E265A, P271L, N272G, H280R, Y302F, N304I, L309Q, N311K, D312N, E315T, -318K, -319E, L321F, K322Q, -323N, -324L, -325K, -326I, -327Q, K329I, I331N, N334S, S337A, N358D, S360D, K361Q, T365S, T366-, N369-, N378-, T380-, T387F, R401K, Q416R, N420S, N432E, N435S, -436S, E438D, R448K, K479N; gp41: M4I, M7V, A14T, A30V, Y75F, N96S, D109E, D129E, S163A, N166H, S192A, N195K, R196K, L242F, A245V, S251N, D272N, K276E, G277R, E280K, Y291H, G293S, N305D, E320D, A325I, I329V; nef: A15T, R21K, R22Q, H40Y, R49K, A50E, A53P, E62D, Y81F, H89F, I133T, Y135F, N161T, M168I, L170Q, M173I, K182M, L191M, R198K; p1: I5L, S8P, N9S, K10-; p17: K28Q, E55D, G62L, Y79F, T81A, R95K, Q113K; p2: K6Q, A7V, -10T, A11-, -12T; p24: T54V, H87Q, M96I, E128D, I230V; p6: Q35P, S40A; p7: E21V; rev: E11D, S61R, T68E, G90E, E94G, R95K, G98E, S106P, V109A, G111E; tat: K12Q, K19E, L36R, R40S, T58S; vif: M16L, R34K, E60K, Q83H, I124L, H127Y; vpr: H28Q, L42M, I63M; vpu: L4S, L5I, A15V, Y27I, R41K, V71M, D78N"}}}]}]}]}]}]}, {"name": "NODE_0000074", "node_attrs": {"div": 0.03492, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A265G", "G495T", "A562G", "A677G", "A774C", "T944C", "-1456C", "C1460-", "G1589A", "T1679C", "A1776G", "A1780G", "T1787C", "C1986T", "G2293A", "A2407G", "T2527C", "G2548A", "A2579T", "T2723C", "T2776C", "C2806T", "G2878A", "C3100G", "G3165T", "G3316A", "C3449T", "A3529G", "G3553A", "A3574G", "T3799A", "T4321C", "A4475G", "A4495G", "G4642A", "A4643C", "C4652A", "C4665T", "T4674C", "T4691C", "T4769A", "A4862G", "C4914T", "C5615A", "-5620T", "A5623G", "T5624C", "T5636C", "C6052T", "G6079A", "A6087C", "T6181C", "-6209C", "-6220G", "-6221C", "-6222C", "A6228C", "A6233C", "A6253G", "A6263G", "A6278C", "T6287C", "G6311A", "T6322C", "C6397T", "T6399G", "T6400G", "T6438A", "C6545T", "T6586C", "G6593C", "A6602T", "G6631C", "A6647C", "A6649G", "G6693-", "T6745C", "A6767G", "G6806A", "C6807A", "T6808G", "A6822C", "C6823T", "C6826T", "C6850A", "A6856C", "C6857T", "C6888T", "G6905A", "A6947-", "A6992-", "-7004G", "C7079G", "A7102C", "A7238G", "G7281A", "A7322T", "T7411A", "G7428A", "A7447T", "A7553C", "T7630G", "A7685T", "G7688A", "A7720G", "C7747A", "C7898A", "C8051A", "G8055A", 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K462E; gp41: T128S, D148E, Q199K, D230G, A245V, T270I, G293S, V321A, F340L; nef: I20M, D38E, K39R, H40R, G83A, F85V, E174D, R191L; p17: A54S, K76R; p2: -10T; p24: I15L; p6: K33E, E34G, T39A; rev: A68E, G111E; vif: R19N, N22K, H27Y, Y30H, D61E, R63K, H110Y; vpu: P3D, I6A, L34V"}}, "children": [{"name": "results/subtype_trees/CRF05_DF.nwk", "node_attrs": {"div": 0.07361000000000001, "clade_membership": {"value": "CRF05_DF"}}, "branch_attrs": {"mutations": {"nuc": ["G206A", "T228A", "T258C", "A261G", "-280G", "C281T", "G282A", "C300T", "-305T", "A399C", "G407A", "C435A", "A464C", "A491G", "T534G", "C536T", "C537A", "G585A", "T586C", "C603G", "A617G", "T641A", "G671A", "C672A", "A678G", "C691A", "A697G", "G702A", "-704G", "-709G", "-711A", "-713C", "-714C", "C731T", "T746C", "T749A", "A791G", "G818A", "T858C", "A863G", "C944G", "C974T", "C1004T", "C1005G", "G1016A", "T1028A", "G1090A", "G1101A", "C1136T", "A1139G", "A1196G", "G1199A", "A1205G", "C1211T", "A1230C", "T1237A", "T1253C", 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"C7625G", "A7629G", "G7676A", "G7681T", "T7684C", "A7689G", "A7714G", "A7722T", "G7754T", "G7759A", "A7763C", "T7774C", "T7796A", "C7801A", "G7807A", "G7868A", "T7879C", "A7885G", "T7929C", "C7931T", "G7965A", "A7977G", "G7992A", "A7998G", "G8006A", "C8015G", "A8023C", "G8029A", "C8047T", "G8079A", "T8094C", "C8103T", "C8106T", "T8164C", "T8169C", "A8170G", "G8173A", "A8184G", "C8258A", "T8293C", "A8329G", "A8370G", "G8398A", "A8408C", "T8436G", "C8443T", "A8456C", "G8458A", "A8459T", "A8469G", "G8476T", "A8479G", "C8480A", "C8488T", "C8504T", "T8505A", "A8531G", "G8554A", "C8640T", "G8647A", "G8648C", "C8688A", "C8699T", "T8704C", "C8741T", "T8759G", "G8762T", "C8775T", "G8787A", "A8804G", "A8823G", "A8851T", "A8852G", "T8864G", "A8870T", "T8883C", "A8885G", "A8886C", "A8905G", "C8939T", "A8945G", "C8952A", "A8953G", "A8954G", "G8955A", "C8957G", "-8971C", "A9005G", "A9016G", "C9017A", "T9041G", "C9078T", "C9155-", "T9176G", "T9179G", "T9180C", "C9181A"], "INT": ["E10D", "E96D", "V113I", "T124G", "A179T", "S195G", "A205T", "T218I"], "RT-p51": ["E40D", "K70R", "V106I", "D123E", "I178V", "E203K", "K211A", "A286T", "V293I", "I329V", "Q334L", "D335G", "T357A", "S359G", "A360V", "T400I"], "RT-p66": ["E40D", "K70R", "V106I", "D123E", "I178V", "E203K", "K211A", "A286T", "V293I", "I329V", "Q334L", "D335G", "T357A", "A360V", "T400I", "V458I", "T477A", "H480Q", "S491L", "Q527E", "E529K", "R530K", "N554A", "I559V"], "gp120": ["A3T", "N5K", "L6F", "K18R", "N21K", "E34D", "A37V", "I56V", "E59G", "N71D", "E78T", "-106F", "N108A", "-109N", "-110S", "-111T", "-112A", "-113N", "-115T", "-116S", "-117T", "-118T", "-119L", "-120K", "-121E", "Q123T", "I126V", "K142L", "N157S", "N158S", "N159D", "N160D", "N161S", "N206S", "E239K", "N241G", "T253A", "Q265H", "G307R", "E315I", "-318A", "-319K", "K322Q", "-323S", "-326P", "N328-", "I332K", "S345M", "N358D", "G361K", "S365A", "-367V", "-368F", "-370D", "-371T", "-372V", "-373F", "-374N", "-375A", "-376T", "-377M", "-378F", "-379N", "-380N", "-381D", "-382S", "-383D", "-384K", "T385N", "T387I", "R391K", "I396V", "N397R", "T416A", "N420T", "T427A", "N433G", "N435D", "T439I", "E464Q", "V468I"], "gp41": ["V2M", "L4I", "G13A", "T25A", "C87S", "L91H", "T94S", "N96S", "Y108E", "D109G", "G125S", "Q126N", "N129S", "N140I", "A151S", "K154Q", "S165T", "N166K", "A189T", "L209P", "L210F", "G221E", "E225G", "G230D", "D232G", "V235I", "L238V", "R259H", "I264T", "A267V", "A268V", "L289P", "Q294R", "L319I"], "nef": ["I10V", "R19K", "S32A", "S34F", "E38D", "R39N", "I43V", "S45I", "N46R", "A49V", "L55M", "R71K", "W102Y", "H116N", "F121S", "F139L", "D149N", "N161D", "Q170L", "D174E", "E176D", "K182Q"], "p1": ["I5V"], "p17": ["I34L", "S72T", "R76K", "T122A", "V128A"], "p2": ["T11A", "A12T", "V13A"], "p24": ["L6I", "H87Q", "I91V", "E98D", "P207Q"], "p6": ["G16R", "T22A", "P23S"], "p7": ["R11K", "S12I", "T24I", "R32G"], "pro": ["K14R", "I64V"], "rev": ["P28L", "S53N", "A56G", "I59L", "D61S", "P67S", "S106P", "T108A", "V109I"], "tat": ["K29M", "V36N", "T54P", "I67D", "S74P", "E86K"], "vif": ["K36N", "G37R", "F39C", "Y44F", "H48N", "E60G", "E61D", "I66V", "E78D", "G92R", "G101S", "L109V", "K122N", "Y127R", "R128I", "Y135F", "Q157K", "H183R", "H192Y"], "vpr": ["T19I", "S28H", "G41S", "H45Y", "I61V", "H77R", "I84L", "A89I"], "vpu": ["A6T", "V7I", "I9V", "F12L", "T24I", "M71V"]}, "labels": {"aa": "INT: E10D, E96D, V113I, T124G, A179T, S195G, A205T, T218I; RT-p51: E40D, K70R, V106I, D123E, I178V, E203K, K211A, A286T, V293I, I329V, Q334L, D335G, T357A, S359G, A360V, T400I; RT-p66: E40D, K70R, V106I, D123E, I178V, E203K, K211A, A286T, V293I, I329V, Q334L, D335G, T357A, A360V, T400I, V458I, T477A, H480Q, S491L, Q527E, E529K, R530K, N554A, I559V; gp120: A3T, N5K, L6F, K18R, N21K, E34D, A37V, I56V, E59G, N71D, E78T, -106F, N108A, -109N, -110S, -111T, -112A, -113N, -115T, -116S, -117T, -118T, -119L, -120K, -121E, Q123T, I126V, K142L, N157S, N158S, N159D, N160D, N161S, N206S, E239K, N241G, T253A, Q265H, G307R, E315I, -318A, -319K, K322Q, -323S, -326P, N328-, I332K, S345M, N358D, G361K, S365A, -367V, -368F, -370D, -371T, -372V, -373F, -374N, -375A, -376T, -377M, -378F, -379N, -380N, -381D, -382S, -383D, -384K, T385N, T387I, R391K, I396V, N397R, T416A, N420T, T427A, N433G, N435D, T439I, E464Q, V468I; gp41: V2M, L4I, G13A, T25A, C87S, L91H, T94S, N96S, Y108E, D109G, G125S, Q126N, N129S, N140I, A151S, K154Q, S165T, N166K, A189T, L209P, L210F, G221E, E225G, G230D, D232G, V235I, L238V, R259H, I264T, A267V, A268V, L289P, Q294R, L319I; nef: I10V, R19K, S32A, S34F, E38D, R39N, I43V, S45I, N46R, A49V, L55M, R71K, W102Y, H116N, F121S, F139L, D149N, N161D, Q170L, D174E, E176D, K182Q; p1: I5V; p17: I34L, S72T, R76K, T122A, V128A; p2: T11A, A12T, V13A; p24: L6I, H87Q, I91V, E98D, P207Q; p6: G16R, T22A, P23S; p7: R11K, S12I, T24I, R32G; pro: K14R, I64V; rev: P28L, S53N, A56G, I59L, D61S, P67S, S106P, T108A, V109I; tat: K29M, V36N, T54P, I67D, S74P, E86K; vif: K36N, G37R, F39C, Y44F, H48N, E60G, E61D, I66V, E78D, G92R, G101S, L109V, K122N, Y127R, R128I, Y135F, Q157K, H183R, H192Y; vpr: T19I, S28H, G41S, H45Y, I61V, H77R, I84L, A89I; vpu: A6T, V7I, I9V, F12L, T24I, M71V"}}}, {"name": "AY227107", "node_attrs": {"div": 0.10255, "accession": "AY227107", "clade_membership": {"value": "CRF05_DF"}, "country": {"value": "ES"}, "date": {"value": 1999.0}, "Strain_name": {"value": "X492"}, "LANL_subtype": {"value": "CRF05_DF"}}, "branch_attrs": {"mutations": {"nuc": ["A214-", "G215A", "A228-", "A334T", "A389G", "T396C", "G519A", "C525T", "G534T", "A566T", "A599C", "G629A", "A647G", "A699G", "C713T", "C722T", "C747A", "G770A", "G771C", "T782A", "T794C", "A839G", "C893T", "G1019A", "C1230A", "C1253A", "G1302A", "A1328G", "T1335C", "G1394A", "T1421C", "T1452G", "-1460A", "A1461G", "C1478T", "G1508A", "C1535T", "C1556T", "T1646C", "A1660G", "T1676C", "C1679T", "C1721T", "C1767A", "A1781G", "T1796C", "G1826A", "A1906G", "C1985G", "C1987T", "A1988G", "C2199T", "A2314G", "A2515G", "A2560G", "G2693A", "G2707T", "A2727G", "A2734G", "T2737C", "C2749T", "A2755G", "A2878G", "G2902A", "A2925G", "C3067A", "A3080G", "A3088G", "A3096C", "G3100C", "G3205A", "A3230G", "G3236A", "G3238A", "G3398T", "G3442A", "C3475T", "A3477G", "T3544C", "T3566C", "C3665A", "C3691T", "A3805T", "T3829C", "T3898C", "G3901A", "T3962C", "A3973T", "T4018C", "T4024C", "T4110G", "A4130C", "G4145A", "C4181A", "T4234A", "A4243T", "T4288G", "A4315G", "C4321T", "C4569T", "C4761T", "G4764A", "G4864A", "G4988T", "T5062A", "T5084C", "C5091T", "C5102T", "G5185A", "G5226A", "A5246G", "T5260C", "A5269G", "T5275C", "T5292C", "C5294T", "C5333T", "T5382G", "A5426G", "A5448G", "C5478T", "C5536A", "G5558A", "A5576T", "T5577C", "G5629A", "A5632G", "G5729A", "A5735T", "A5757C", "G5768-", "C5769-", "A5770-", "A5842G", "T5850C", "G5853C", "G5858A", "G5864A", "T5920C", "T5944A", "A5947G", "G5949C", "A5956C", "T5980C", "C6026A", "A6065G", "C6087A", "A6088G", "T6091C", "G6121A", "C6153A", "T6154C", "T6166A", "-6170G", "-6174A", "-6175T", "G6179T", "C6184T", "C6186A", "T6187A", "A6192C", "-6195G", "A6200C", "A6203C", "-6204T", "C6205G", "-6207G", "C6208G", "C6209A", "T6210A", "A6213T", "-6214C", "G6215A", "A6217G", "C6222A", "G6224-", "G6225-", "G6226-", "G6227-", "C6228-", "A6229-", "A6230-", "T6231-", "A6232-", "T6244C", "A6261T", "A6268T", "T6271C", "A6276G", "A6279G", "A6281G", "A6329G", "T6331C", "A6333G", "A6335G", "G6339A", "-6340T", "C6487T", "A6489C", "G6490A", "A6520G", "T6522A", "G6550A", "A6574T", "T6577G", "A6581G", "C6586A", "G6605T", "A6606C", "C6619T", "C6631T", "C6673T", "A6712G", "G6767A", "C6777A", "A6789G", "A6807G", "A6810C", "A6819C", "G6821A", "C6822A", "T6823G", "A6825T", "T6827A", "T6835-", "A6845G", "A6854G", "C6856G", "T6860C", "T6863A", "C6864T", "A6881G", "C6922T", "G6935C", "G6936A", "-6984G", "-6985A", "-6986C", "-6987A", "-6988C", "-6989A", "-6990C", "-6991T", "-6992A", "-6993C", "-6994C", "-6995C", "-6996A", "-6997A", "-6998G", "-6999A", "T7000A", "A7005G", "C7018A", "G7055A", "G7056A", "C7064A", "C7096T", "T7114C", "C7127A", "G7142A", "G7146A", "A7155G", "A7158G", "G7160A", "A7163-", "T7222C", "C7267A", "G7291A", "A7299G", "A7313C", "A7315G", "G7366A", "G7369C", "A7375G", "A7399G", "A7420G", "A7504G", "G7590A", "C7625T", "G7627T", "G7630T", "G7631C", "C7642A", "A7669G", "A7673G", "A7679C", "C7692A", "A7733C", "A7743T", "A7782G", "A7898C", "T7912A", "G7915A", "T7921A", "G7937A", "A8019G", "A8023G", "C8026A", "G8030A", "A8093C", "G8110A", "A8111G", "A8132G", "T8218C", "G8228A", "T8251C", "C8277T", "G8365A", "T8366C", "C8382T", "G8385A", "C8386G", "T8387A", "G8441A", "C8450T", "T8505G", "G8534A", "G8588A", "C8609T", "A8621T", "A8652C", "T8666C", "C8687T", "G8717A", "G8774A", "G8799A", "T8813C", "G8814-", "A8815-", "A8816-", "A8823G", "A8827G", "T8832C", "G8834A", "G8846-", "G8861A", "A8869C", "G8875A", "G8888A", "A8893G", "C8906A", "G8909A", "G8917A", "A8918G", "A8922C", "A8924G", "A8934C", "G8935A", "-8971A", "T8974G", "G8995A", "C9012T", "A9027G"], "INT": ["E10D", "M112R", "Q136K", "K156N", "H171Q", "A265V"], "RT-p51": ["T35I", "A200T", "E204D", "K211R", "K277R", "D324E", "I329V", "Q334P", "S359G", "S379G", "V381I"], "RT-p66": ["T35I", "A200T", "E204D", "K211R", "K277R", "D324E", "I329V", "Q334P", "S379G", "V381I", "K461R", "S491P", "Q524K"], "gp120": ["A2T", "D4N", "G32A", "E34D", "L58M", "N71D", "T100N", "D105-", "-109S", "-110T", "-111K", "-112A", "-113T", "-115N", "-116P", "-117L", "-118R", "-119K", "-120I", "-121K", "G124Q", "A125-", "I126-", "Q127-", "E136V", "K141R", "K142R", "K143E", "N159G", "N160S", "N161D", "S162N", "K212T", "I223N", "E240D", "N241R", "I243V", "D251S", "V305I", "K312R", "V317I", "E320-", "L321-", "K322-", "H324-", "F325-", "N327-", "I331V", "N334E", "S336P", "S337I", "I343V", "G361Q", "S365-", "T366-", "N369-", "G401K", "Q404K", "L425I", "G430S", "G431E", "N432D", "N435S", "K482R"], "gp41": ["M7L", "I24M", "E110Q", "D113E", "I124V", "T130K", "K144Q", "Q147L", "N160S", "K199Q", "F206L", "A212T", "N239S", "F241L", "A243T", "I264L", "I270V", "R277G", "V309I", "A325V"], "nef": ["S8N", "P14S", "A15R", "L55V", "E93D", "K104Q", "V153I", "E158-", "N161D", "N162R", "M173I", "E176A", "R178K", "K184R", "S188K", "R192K", "I194L", "R198Q", "F202Y", "Y203Q", "Q204D"], "p1": ["K10R"], "p17": ["S62R", "A67S", "I104M", "T122A", "G123R"], "p2": ["N9K", "S10A"], "p24": ["L6I", "A14P", "M96I", "V191I"], "p6": ["Q30K"], "pro": ["V10I", "I36M", "L63V", "I64V"], "rev": ["D7E", "A15T", "I21S", "S30N", "I59V", "L60I", "N82T", "D88S", "Q95R"], "tat": ["D2E", "Q17R", "G61D"], "vif": ["E60K", "R93K", "E134D", "T159K"], "vpr": ["G41D", "N48D", "I63T", "S93A"], "vpu": ["A8T", "I9V", "V10A", "R41K", "Y43F", "G54D", "N55-", "I79V"]}, "labels": {"aa": "INT: E10D, M112R, Q136K, K156N, H171Q, A265V; RT-p51: T35I, A200T, E204D, K211R, K277R, D324E, I329V, Q334P, S359G, S379G, V381I; RT-p66: T35I, A200T, E204D, K211R, K277R, D324E, I329V, Q334P, S379G, V381I, K461R, S491P, Q524K; gp120: A2T, D4N, G32A, E34D, L58M, N71D, T100N, D105-, -109S, -110T, -111K, -112A, -113T, -115N, -116P, -117L, -118R, -119K, -120I, -121K, G124Q, A125-, I126-, Q127-, E136V, K141R, K142R, K143E, N159G, N160S, N161D, S162N, K212T, I223N, E240D, N241R, I243V, D251S, V305I, K312R, V317I, E320-, L321-, K322-, H324-, F325-, N327-, I331V, N334E, S336P, S337I, I343V, G361Q, S365-, T366-, N369-, G401K, Q404K, L425I, G430S, G431E, N432D, N435S, K482R; gp41: M7L, I24M, E110Q, D113E, I124V, T130K, K144Q, Q147L, N160S, K199Q, F206L, A212T, N239S, F241L, A243T, I264L, I270V, R277G, V309I, A325V; nef: S8N, P14S, A15R, L55V, E93D, K104Q, V153I, E158-, N161D, N162R, M173I, E176A, R178K, K184R, S188K, R192K, I194L, R198Q, F202Y, Y203Q, Q204D; p1: K10R; p17: S62R, A67S, I104M, T122A, G123R; p2: N9K, S10A; p24: L6I, A14P, M96I, V191I; p6: Q30K; pro: V10I, I36M, L63V, I64V; rev: D7E, A15T, I21S, S30N, I59V, L60I, N82T, D88S, Q95R; tat: D2E, Q17R, G61D; vif: E60K, R93K, E134D, T159K; vpr: G41D, N48D, I63T, S93A; vpu: A8T, I9V, V10A, R41K, Y43F, G54D, N55-, I79V"}}}]}, {"name": "CRF05_DF_NODE_0000002", "node_attrs": {"div": 0.08032, "clade_membership": {"value": "CRF05_DF"}}, "branch_attrs": {"mutations": {"nuc": ["G520C", "A605G", "A1263T", "T1344C", "A1450G", "A1642G", "G1845A", "C2420T", "A2929G", "C2978T", "T3059G", "G3170A", "C3542T", "G4495A", "C4786T", "C4911A", "A5142T", "T5356C", "A5560G", "-6167G", "-6175C", "A6177G", "-6204G", "-6214G", "G6253A", "-6832A", "-6834A", "G6894T", "-6949C", "-6950A", "-6951C", "-6971A", "-6973T", "-7001A", "G7519A", "A7818G", "G8255A", "A8288G", "A8489C", "A8653G", "T8740C", "A8938G", "A9095G"], "RT-p51": ["S322A"], "RT-p66": ["H483Y"], "gp120": ["E308A", "S347I", "S436D"], "gp41": ["D109E", "K172R", "V318I", "I329V"], "nef": ["K104R", "I133T"], "p1": ["K4R"], "p24": ["T178S"], "pro": ["G16E"], "tat": ["S62G"], "vif": ["T67I", "L109M"], "vpr": ["E13V", "I84T"]}, "labels": {"aa": "RT-p51: S322A; RT-p66: H483Y; gp120: E308A, S347I, S436D; gp41: D109E, K172R, V318I, I329V; nef: K104R, I133T; p1: K4R; p24: T178S; pro: G16E; tat: S62G; vif: T67I, L109M; vpr: E13V, I84T"}}, "children": [{"name": "MH746260", "node_attrs": {"div": 0.1236, "accession": "MH746260", "clade_membership": {"value": "CRF05_DF"}, "country": {"value": "BG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "V_09_003"}, "LANL_subtype": {"value": "CRF05_DF"}}, "branch_attrs": {"mutations": {"nuc": ["A359C", "A386C", "T396C", "G405A", "A417C", "A419C", "A437C", "G455A", "G519T", "T549A", "G579A", "A641G", "A647G", "G678A", "C688T", "A702-", "G703-", "G704-", "A705-", "A706-", "C707-", "A708-", "G709-", "C710-", "C713T", "G716A", "C746T", "C767T", "A818G", "A941G", "G944A", "T978C", "A1025G", "A1115G", "A1176T", "C1229T", "G1311T", "A1343T", "G1394A", "G1400C", "A1404G", "A1418G", "G1430A", "A1451G", "G1458A", "-1460T", "G1495A", "C1535T", "G1588A", "A1743-", "C1744-", "C1745-", "-1746A", "-1747C", "-1748T", "A1759G", "G1773A", "A1774G", "C1787T", "A1793G", "C1795A", "A1804G", "A1841G", "A1861G", "A1932G", "C1985A", "T1986C", "A2075C", "G2134A", "A2182G", "A2198T", "A2293G", "C2326T", "T2356C", "A2389T", "G2407A", "C2452T", "G2461A", "T2464G", "T2499C", "A2510G", "A2512T", "T2542G", "A2626C", "A2678C", "G2707A", "A2710G", "A2715C", "A2716C", "T2719C", "A2726G", "A2727C", "C2749T", "T2779A", "T2831C", "A2985G", "T3045C", "G3059A", "G3100T", "G3166A", "A3230G", "A3307T", "A3340G", "T3359C", "A3364G", "A3484G", "T3541C", "T3566C", "G3574A", "G3643A", "G3664A", "A3667G", "C3674A", "A3675G", "A3760G", "C3763T", "G3787T", "A3808C", "A3816G", "G3846A", "A3868T", "G3869A", "T3909A", "C3922A", "A3923G", "G4051A", "A4114G", "G4145A", "T4165C", "G4246A", "A4306G", "C4321T", "A4402G", "C4428T", "A4561G", "G4673A", "A4692C", "T4701G", "A4717T", "G4723A", "A4737G", "A4748G", "A4768G", "G4870A", "C4954T", "G4969A", "G4988A", "T5062G", "T5072C", "A5093G", "C5168A", "A5191G", "A5249T", "T5336G", "T5382C", "A5491G", "C5536A", "C5554A", "G5558A", "C5578T", "G5614A", "G5619T", "T5620A", "G5626A", "C5630T", "T5633C", "C5636T", "T5642A", "C5653A", "T5697C", "T5704G", "A5737G", "G5747T", "A5806G", "C5862A", "G5864A", "G5902A", "C5917T", "T5920C", "T5944A", "G5972A", "A6009G", "C6026A", "A6030G", "A6045C", "A6059G", "A6061G", "C6087A", "A6142G", "C6155T", "-6170T", "C6171G", "C6172T", "A6173G", "-6174T", "A6176C", "T6178A", "G6179A", "C6180A", "C6181T", "C6183A", "C6184A", "-6195C", "C6196T", "A6198C", "C6199T", "C6201G", "C6202T", "A6206G", "-6207A", "C6209T", "A6213G", "G6220T", "G6225A", "C6238T", "T6244C", "A6251G", "T6252C", "A6267C", "G6274A", "A6276G", "C6287T", "G6303A", "C6318A", "A6327C", "T6328A", "G6330C", "A6332G", "-6340G", "G6346A", "C6347A", "A6350T", "A6368G", "C6369T", "A6371G", "T6385C", "G6392A", "A6430G", "A6465C", "A6478G", "G6481A", "G6576A", "A6581G", "T6607C", "T6610C", "A6628G", "G6638A", "A6640G", "T6641A", "C6666A", "A6683G", "A6693G", "T6694G", "T6695A", "A6742G", "A6751G", "G6754A", "C6766T", "G6773A", "A6786G", "T6787G", "A6788G", "A6790C", "A6799T", "A6806-", "G6808A", "A6810G", "A6811C", "G6812A", "A6813G", "G6814A", "T6815G", "A6817T", "A6819C", "C6822G", "T6823C", "C6824T", "A6825C", "T6826G", "T6828C", "C6829T", "-6830C", "-6831A", "-6833T", "A6837T", "T6838C", "A6842-", "C6843-", "A6854C", "C6856A", "T6857C", "T6895G", "-6947A", "-6948G", "-6952A", "-6953G", "-6954G", "-6955T", "-6956A", "-6957A", "-6958T", "-6959G", "-6960A", "-6961C", "-6962A", "-6963C", "-6964A", "-6965A", "-6966T", "-6967A", "-6968T", "-6969C", "-6970C", "-6972A", "-6998G", "-6999G", "T7000C", "-7002C", "A7006C", "A7007C", "C7014T", "C7078T", "G7088A", "C7089A", "A7095G", "G7146A", "T7147G", "A7148G", "A7149G", "A7157T", "A7158C", "T7162G", "-7164A", "-7165T", "G7168A", "G7190A", "T7192C", "G7197A", "G7244A", "G7256A", "A7273G", "A7277C", "A7290C", "A7299G", "A7313C", "T7323G", "T7386C", "T7400C", "C7574G", "A7589C", "G7608C", "T7618C", "A7620G", "C7625T", "G7627T", "G7631A", "G7633T", "G7640A", "A7646C", "G7657A", "G7677A", "A7680G", "T7682C", "T7703C", "C7712G", "A7714T", "C7723A", "A7747G", "G7831A", "G7841A", "T7863C", "C7913T", "T7916C", "A7918G", "C7939T", "C8103T", "A8152G", "A8230G", "G8245A", "C8291T", "A8308G", "C8320T", "T8348G", "A8353T", "G8385A", "C8386A", "T8387G", "G8407A", "G8465A", "C8488T", "G8490A", "A8531C", "G8561A", "G8595A", "C8609T", "A8643G", "C8687T", "A8701T", "G8717A", "A8746T", "T8789G", "T8832C", "T8855C", "A8870T", "A8892C", "C8906A", "T8913C", "A8918G", "G8933A", "C8937T", "A8942T", "A8945C", "C8951T", "A8953G", "A8954G", "C8966G", "A8967C", "G8968A", "-8971A", "T8974G", "A8977G", "C9039T", "A9042C", "C9043A", "T9046C", "C9047T", "A9048C", "T9074C", "C9075-"], "INT": ["E11D", "K14R", "S24N", "V32I", "L45Q", "M50V", "P119S", "T218I"], "RT-p51": ["T35S", "D123E", "I135T", "T139A", "E177D", "I195L", "E207A", "K211A", "E297G", "V317A", "A322T", "S379G", "E404D"], "RT-p66": ["T35S", "D123E", "I135T", "T139A", "E177D", "I195L", "E207A", "K211A", "E297G", "V317A", "S322T", "S379G", "E404D", "S491P", "Q527R"], "gp120": ["A3E", "D4N", "V40I", "N52S", "L58M", "E59G", "N64T", "K69E", "-106C", "K107V", "N108R", "-109N", "-110K", "-111N", "-112T", "-113T", "-115S", "-116D", "-117L", "-118R", "-119E", "-120D", "-121P", "Q123A", "G124-", "A125-", "M133A", "N138T", "K141R", "K142Q", "H145Y", "R150K", "P155Q", "N157D", "N159R", "N160T", "N161Y", "S162R", "L165I", "I166L", "T172V", "I173V", "V180I", "K204T", "I243V", "E262K", "S263T", "P271H", "K277E", "H280R", "L281I", "G307R", "N311R", "K312D", "E315D", "T330-", "N334Q", "S335P", "I347M", "-367G", "-370D", "-371T", "-372I", "-373S", "-374N", "-382G", "-383T", "-384D", "T385P", "T387I", "A412K", "N414S", "G431E", "N432G", "N433S", "N435S", "D436E", "S437N", "D446N", "R448K", "E464K", "V468I", "K479T", "K482R"], "gp41": ["M7W", "V28A", "L91V", "N96R", "S102T", "K106R", "E110N", "D113N", "M115L", "M118I", "G125D", "Q126R", "Y127H", "Q137D", "N140K", "M176I", "G180S", "V187A", "S205P", "A267V", "L330F"], "nef": ["K4M", "A15K", "R22Q", "A49V", "A50T", "E63D", "V85I", "I101V", "Y120F", "Y135F", "D149E", "E176D", "K184Q", "S188K", "H199C", "E201D", "Q204R"], "p17": ["L8F", "E17D", "G24R", "K28H", "S72T", "V82I", "I104M", "A115T", "A118V", "G123S", "N124-", "S125-", "S126-"], "p2": ["N9R", "A12T", "V13I"], "p24": ["S149C", "A194S", "S225G"], "p6": ["-26R", "K27-", "D32S", "A39D", "K42R"], "p7": ["R10K", "R41K"], "pro": ["I15V", "K45R", "L63T", "I93L"], "rev": ["D7E", "A15T", "P31S", "D61G", "I102V"], "tat": ["I39V", "Q60K", "G61D", "I67N", "P68S", "P77L"], "vif": ["M29I", "K36Q", "F39V", "Y44F", "S46N", "I51V", "E61G", "S95N", "A123V", "R128K", "T159R", "N186Y"], "vpr": ["L22I", "T49S", "H77Q", "S93P"], "vpu": ["D3N", "L4F", "L5I", "V7I", "A8V", "I9T", "F12Y", "L16I", "L33V", "K44E", "R47I", "M71V"]}, "labels": {"aa": "INT: E11D, K14R, S24N, V32I, L45Q, M50V, P119S, T218I; RT-p51: T35S, D123E, I135T, T139A, E177D, I195L, E207A, K211A, E297G, V317A, A322T, S379G, E404D; RT-p66: T35S, D123E, I135T, T139A, E177D, I195L, E207A, K211A, E297G, V317A, S322T, S379G, E404D, S491P, Q527R; gp120: A3E, D4N, V40I, N52S, L58M, E59G, N64T, K69E, -106C, K107V, N108R, -109N, -110K, -111N, -112T, -113T, -115S, -116D, -117L, -118R, -119E, -120D, -121P, Q123A, G124-, A125-, M133A, N138T, K141R, K142Q, H145Y, R150K, P155Q, N157D, N159R, N160T, N161Y, S162R, L165I, I166L, T172V, I173V, V180I, K204T, I243V, E262K, S263T, P271H, K277E, H280R, L281I, G307R, N311R, K312D, E315D, T330-, N334Q, S335P, I347M, -367G, -370D, -371T, -372I, -373S, -374N, -382G, -383T, -384D, T385P, T387I, A412K, N414S, G431E, N432G, N433S, N435S, D436E, S437N, D446N, R448K, E464K, V468I, K479T, K482R; gp41: M7W, V28A, L91V, N96R, S102T, K106R, E110N, D113N, M115L, M118I, G125D, Q126R, Y127H, Q137D, N140K, M176I, G180S, V187A, S205P, A267V, L330F; nef: K4M, A15K, R22Q, A49V, A50T, E63D, V85I, I101V, Y120F, Y135F, D149E, E176D, K184Q, S188K, H199C, E201D, Q204R; p17: L8F, E17D, G24R, K28H, S72T, V82I, I104M, A115T, A118V, G123S, N124-, S125-, S126-; p2: N9R, A12T, V13I; p24: S149C, A194S, S225G; p6: -26R, K27-, D32S, A39D, K42R; p7: R10K, R41K; pro: I15V, K45R, L63T, I93L; rev: D7E, A15T, P31S, D61G, I102V; tat: I39V, Q60K, G61D, I67N, P68S, P77L; vif: M29I, K36Q, F39V, Y44F, S46N, I51V, E61G, S95N, A123V, R128K, T159R, N186Y; vpr: L22I, T49S, H77Q, S93P; vpu: D3N, L4F, L5I, V7I, A8V, I9T, F12Y, L16I, L33V, K44E, R47I, M71V"}}}, {"name": "AF076998", "node_attrs": {"div": 0.10416, "accession": "AF076998", "clade_membership": {"value": "CRF05_DF"}, "country": {"value": "BE"}, "date": {"value": 1993.0}, "Strain_name": {"value": "VI961"}, "LANL_subtype": {"value": "CRF05_DF"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T305C", "T308G", "T467C", "C471A", "G607A", "A673G", "A674T", "G677A", "G703A", "A711G", "A715C", "A730T", "G821A", "T852A", "C893T", "T978G", "T988C", "G989A", "T992G", "G1019A", "G1077A", "T1262C", "G1271T", "G1388A", "A1449G", "A1455C", "-1460A", "A1461G", "G1498A", "A1567G", "C1615T", "A1620G", "A1644G", "C1651T", "G1664A", "T1754G", "A1781G", "C1782A", "T1783A", "C1811T", "T1873C", "C1903A", "A1906G", "T1954C", "T1996C", "G2005T", "A2012G", "A2215C", "A2304G", "G2321A", "A2329G", "G2343A", "G2456C", "A2459G", "T2464C", "G2509A", "A2519T", "A2629G", "G2693A", "A2713G", "A2755G", "A2818G", "G2837A", "A2884G", "G2951A", "G3171A", "G3398A", "A3400G", "A3490G", "A3511C", "A3571G", "C3653A", "A3671G", "G3775A", "A3781G", "G3825A", "T3962C", "T4039C", "C4181A", "T4234G", "A4370G", "G4388T", "T4477G", "T4655C", "G4689A", "G4696C", "G4766A", "A4814G", "G4829A", "G4878A", "A5036G", "A5122G", "A5143G", "A5159G", "C5160T", "G5226A", "T5275C", "C5280T", "T5286C", "T5313C", "T5391C", "T5452C", "C5536T", "A5576T", "T5688C", "A5689T", "A5699G", "G5839A", "A6020T", "T6024C", "C6122T", "-6170G", "-6174C", "T6187C", "G6188A", "C6190T", "A6192G", "T6193C", "-6195A", "C6196G", "C6201T", "C6205T", "-6207C", "C6222A", "T6242A", "G6277T", "C6278A", "A6282G", "C6317T", "A6327G", "T6331C", "A6333G", "T6334A", "C6337A", "A6338G", "G6339A", "-6340A", "C6396G", "T6457A", "A6465G", "G6550A", "C6562T", "C6603T", "A6618C", "A6693C", "G6725A", "T6733G", "A6809G", "T6815C", "A6819G", "A6820G", "T6827A", "C6829A", "-6830G", "-6831G", "-6833C", "A6848G", "T6863G", "-6947G", "-6948T", "-6972G", "-6974A", "-6975C", "-6976C", "-6977C", "-6978A", "-6979A", "-7002A", "C7096T", "G7152T", "A7155C", "C7156T", "-7164C", "-7165A", "A7289C", "A7313G", "T7325C", "C7328A", "A7375G", "T7444C", "A7505C", "A7533G", "G7534A", "T7555C", "C7642A", "G7658C", "A7679C", "C7742A", "A7747C", "G7790A", "A7791G", "C7801T", "G7868A", "A7880G", "T7921C", "C7938G", "C7960A", "A8005C", "A8019C", "C8026G", "G8030A", "A8188G", "G8365A", "T8369G", "A8409G", "C8411A", "C8412G", "C8413G", "T8414A", "C8415G", "C8499G", "C8552T", "A8584T", "T8585C", "G8588A", "C8590G", "G8595T", "A8636T", "G8664A", "T8666G", "C8688A", "T8747C", "C8828A", "A8847C", "G8848A", "C8873T", "A8874G", "A8887G", "A8904T", "A8905C", "G8917A", "-8971T", "C8975T", "G9015A", "G9033-", "T9041C"], "INT": ["S17N"], "RT-p51": ["E40D", "K70R", "D76N", "R83K", "D121H", "K122E", "I142F", "I178M", "A200T", "D248N", "A286T", "D335E", "S359N", "V435M"], "RT-p66": ["E40D", "K70R", "D76N", "R83K", "D121H", "K122E", "I142F", "I178M", "A200T", "D248N", "A286T", "S322A", "D335E", "S359N", "V435M", "Q520K", "I526V"], "gp120": ["I56L", "V57A", "E78A", "P90S", "-106L", "N108E", "S114-", "S130T", "M133I", "N138K", "K141N", "K143R", "P155S", "N158S", "N159S", "N160R", "N161K", "S162E", "S181C", "N201K", "K204R", "N241S", "S250L", "N255T", "H280P", "A291T", "-318K", "-319E", "K322R", "-323A", "I332V", "S337A", "S365V", "N369-", "N433I", "N434T", "S437T", "K479Q"], "gp41": ["L4V", "M7L", "F8L", "L9I", "I24M", "K77R", "N96S", "Y108Q", "D113E", "E119Q", "Q147K", "E148D", "D163S", "A189T", "I193V", "A212G", "N239T", "F241L", "A243T"], "nef": ["S8N", "S9R", "E28G", "G29A", "P53A", "Y81F", "A83G", "V85L", "E98D", "D108K", "H116N", "N162K", "S169H", "R178G", "K182R", "R192K", "H199R"], "p1": ["I5V", "P7L"], "p17": ["L46I", "S62A", "R91K", "K113S", "G123K", "S126G", "Q127P", "Y132F"], "p2": ["N9G", "T11P"], "p24": ["S41T", "L83V", "V86A", "H87Q", "M96I", "A116T", "E180D"], "p6": ["L35K"], "p7": ["R11K", "K34R", "T50I", "R52G"], "pro": ["L5F", "D35E", "I36M", "Q69H", "I72V"], "rev": ["I21F", "S30R", "S53R", "E57D", "L60V", "T114A"], "tat": ["Y26H", "T54S", "P77A", "P84Q"], "vif": ["A35T", "G37A", "V98I", "T159I", "K179R", "N186C", "H192Y"], "vpr": ["T19V", "G41D", "A59V", "I61T", "I70T", "S96P"], "vpu": ["V10A", "I28L", "K31R", "D78N"]}, "labels": {"aa": "INT: S17N; RT-p51: E40D, K70R, D76N, R83K, D121H, K122E, I142F, I178M, A200T, D248N, A286T, D335E, S359N, V435M; RT-p66: E40D, K70R, D76N, R83K, D121H, K122E, I142F, I178M, A200T, D248N, A286T, S322A, D335E, S359N, V435M, Q520K, I526V; gp120: I56L, V57A, E78A, P90S, -106L, N108E, S114-, S130T, M133I, N138K, K141N, K143R, P155S, N158S, N159S, N160R, N161K, S162E, S181C, N201K, K204R, N241S, S250L, N255T, H280P, A291T, -318K, -319E, K322R, -323A, I332V, S337A, S365V, N369-, N433I, N434T, S437T, K479Q; gp41: L4V, M7L, F8L, L9I, I24M, K77R, N96S, Y108Q, D113E, E119Q, Q147K, E148D, D163S, A189T, I193V, A212G, N239T, F241L, A243T; nef: S8N, S9R, E28G, G29A, P53A, Y81F, A83G, V85L, E98D, D108K, H116N, N162K, S169H, R178G, K182R, R192K, H199R; p1: I5V, P7L; p17: L46I, S62A, R91K, K113S, G123K, S126G, Q127P, Y132F; p2: N9G, T11P; p24: S41T, L83V, V86A, H87Q, M96I, A116T, E180D; p6: L35K; p7: R11K, K34R, T50I, R52G; pro: L5F, D35E, I36M, Q69H, I72V; rev: I21F, S30R, S53R, E57D, L60V, T114A; tat: Y26H, T54S, P77A, P84Q; vif: A35T, G37A, V98I, T159I, K179R, N186C, H192Y; vpr: T19V, G41D, A59V, I61T, I70T, S96P; vpu: V10A, I28L, K31R, D78N"}}}]}]}, {"name": "NODE_0000078", "node_attrs": {"div": 0.0443, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A508G", "G607A", "G977A", "A1022G", "A1046T", "G1077C", "C1078A", "A1109G", "A1133C", "T1244C", "A1412G", "C1478T", "G1508A", "C1514T", "C1517T", "G1968A", "C1979A", "A1981C", "A2005C", "A2023G", "T2206A", "A2362G", "A2498G", "A2626C", "A2956G", "C3013T", "A3099G", "A3217G", "C3223T", "C3225T", "A3259G", "A3276T", "A3283G", "A3292T", "T3355C", "T3368C", "C3376T", "T3399C", "T3412C", "A3755G", "G3825A", "C4021A", "T4110C", "G5086A", "G5236A", "T5382G", "A5444C", "C6160T", "A6478G", "C6548T", "A6691-", "C6721T", "T6733A", "A6748C", "A6809-", "T6849A", "-7006C", "G7056A", "A7183G", "G7190A", "G7197A", "C7692A", "G7765A", "T8883C", "A8885G"], "INT": ["S17N"], "RT-p51": ["I135V", "E177D", "D335G", "E399D", "V435A"], "RT-p66": ["I135V", "E177D", "D335G", "T377L", "Q394L", "E399D", "V435A", "S554A"], "gp120": ["I56V", "E78T", "D105N", "K142Q", "-323S", "N328-", "I332K", "T345M", "S365D", "I396V", "D446N", "R448K"], "gp41": ["Y108Q", "T130E", "L209H"], "nef": ["S188R"], "p17": ["K58R", "R91K"], "p24": ["A116Q"], "pro": ["R57K", "Q61N"], "tat": ["N23T"], "vif": ["R167K"], "vpr": ["S93A"], "vpu": ["V7I"]}, "labels": {"aa": "INT: S17N; RT-p51: I135V, E177D, D335G, E399D, V435A; RT-p66: I135V, E177D, D335G, T377L, Q394L, E399D, V435A, S554A; gp120: I56V, E78T, D105N, K142Q, -323S, N328-, I332K, T345M, S365D, I396V, D446N, R448K; gp41: Y108Q, T130E, L209H; nef: S188R; p17: K58R, R91K; p24: A116Q; pro: R57K, Q61N; tat: N23T; vif: R167K; vpr: S93A; vpu: V7I"}}, "children": [{"name": "NODE_0000079", "node_attrs": {"div": 0.06149, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G10A", "C23T", "G278A", "A304-", "A404G", "C426A", "A428G", "A474G", "T486C", "A507C", "C510A", "A557G", "G595A", "A609G", "A620G", "T641G", "A645C", "A669C", "A689G", "C700A", "A705-", "A706-", "C707-", "A708-", "C710-", "G712-", "A715-", "C722T", "G740A", "G755A", "C773T", "A806G", "A809G", "C827T", "A869G", "C875T", "C902T", "A1277G", "A1278G", "A1279G", "-1452A", "G1476A", "A1670C", "G1673A", "A2038G", "A2131G", "G2224A", "A2311G", "G2693A", "G3431T", "T3445C", "T3449A", "T3450A", "A3511C", "A3524G", 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L31M, N47D, Q59K, C87Y, I92V, I104L, K112Q, T122K, N124-, S125-, S126-, Q127-; p24: N183G; rev: T62S, T91Q, S92G, G93T, T94E, Q95E, V104G; tat: P3L, E9D, K19T, A21P, K29R, Q35Y, V36W, I39T; vif: G37R, Y44F, R92G, S95R, V98I, L109I, V129I, T155A, T170V, K179E; vpr: A89V; vpu: V10A, -71M"}}, "children": [{"name": "NODE_0000080", "node_attrs": {"div": 0.06826, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A595T", "A810G", "C897T", "G998A", "-1455A", "-1457T", "A1461G", "G1687A", "A1691G", "T3492C", "T3544G", "C3674A", "G3766A", "A3802G", "A3805G", "C3940T", "A4021G", "A4025C", "G4060A", "G4131C", "T4207C", "G4262A", "G4354A", "A4407G", "C4428T", "A4737G", "T4793C", "G4969A", "C5478T", "G5631C", "G5861-", "C5862-", "A5863-", "C6004T", "C6010T", "A6130G", "-6207C", "-6212A", "-6214G", "-6215G", "-6216A", "-6217A", "A6275C", "T6343C", "T6688-", "C6692-", "A6714G", "T6793A", "C6800A", "G6814A", "C6824T", "-7001A", "-7005A", "A7060G", "G7160A", "C7170T", "A7691G", "G7947A", "C8494A", "G8531A", "T8789C"], "INT": ["I84L", "K211R", "T218I"], "RT-p66": ["V466A", "H483Q"], "gp120": ["A3-", "D4E", "K141Q", "H280-", "Q287R", "K329-", "-436N", "T439I"], "gp41": ["G215E"], "nef": ["T51N"], "p17": ["Y87F"], "p2": ["-12V"], "p24": ["I27V"], "p6": ["S3N"], "tat": ["L74I", "D80N"], "vif": ["I51V", "R128K"], "vpr": ["G41S"]}, "labels": {"aa": "INT: I84L, K211R, T218I; RT-p66: V466A, H483Q; gp120: A3-, D4E, K141Q, H280-, Q287R, K329-, -436N, T439I; gp41: G215E; nef: T51N; p17: Y87F; p2: -12V; p24: I27V; p6: S3N; tat: L74I, D80N; vif: I51V, R128K; vpr: G41S"}}, "children": [{"name": "results/subtype_trees/CRF46_BF1.nwk", "node_attrs": {"div": 0.08152, "clade_membership": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C150A", "A431G", "G438A", "G520C", "G524A", "A554G", "A571T", "C774T", "A1196G", "G1256A", "A1449C", "G1784C", "A1828G", "A1849G", "A2026G", "C2083T", "A2113C", "A2154G", "A2524G", "A2560G", "A2612G", "T2689C", "A2701C", 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"gp41": ["M7L", "T25A", "E119Q", "H209L", "A281V", "V318I", "A325V"], "p17": ["R30K"], "p2": ["H9R"], "pro": ["I93L"], "rev": ["E10T"], "tat": ["K24R", "R56H", "S61G", "I74L"], "vif": ["K63T", "K167Q", "E179K"]}, "labels": {"aa": "INT: G163R; RT-p51: K122E, A297V; RT-p66: K122E, A297V; gp120: -3D, E4N, N5-, V57F, -113N, -115T, R150K, K204E, E240G, G307R, -319E, S347N, -380T, N432Q; gp41: M7L, T25A, E119Q, H209L, A281V, V318I, A325V; p17: R30K; p2: H9R; pro: I93L; rev: E10T; tat: K24R, R56H, S61G, I74L; vif: K63T, K167Q, E179K"}}, "children": [{"name": "HM026459", "node_attrs": {"div": 0.12754, "accession": "HM026459", "clade_membership": {"value": "CRF46_BF1"}, "country": {"value": "BR"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07BR_FPS810"}, "LANL_subtype": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A161T", "G166A", "T200C", "A261G", "A302T", "G365C", "A380G", "A388G", "G452A", "C456T", "C471A", "T476C", "T479A", "T495G", "C496T", "A524T", "C525A", "G609C", "G614T", "A632T", "G689-", "G693A", "C694A", "T695A", "A700C", "G703C", "-704A", "-705A", "-706G", "-707C", "-708G", "-709G", "-710C", "-711A", "-712A", "-713A", "-714G", "-715A", "G717A", "G809A", "G908A", "G911A", "A914G", "C926-", "T936-", "C950T", "A951-", "C1013T", "T1052A", "A1160G", "A1208G", "C1229T", "C1292A", "G1302A", "G1311T", "A1416C", "A1467G", "G1469A", "C1481T", "A1496G", "G1498A", "A1525G", "A1580G", "G1588A", "C1692A", "C1693T", "G1709A", "C1730T", "A1733-", "G1734-", "A1735-", "G1736A", "A1740G", "T1741A", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "C1784A", "G1794A", "T1797G", "C1825A", "C1826G", "A1835G", "A1857G", "G1886A", "A1897T", "A1904T", "A1931C", "A1946C", "T1954C", "A1984C", "T1986C", "A1988T", "C2010T", "T2043C", "A2060G", "A2063C", "G2111A", "G2131A", "G2134A", "T2158C", "A2216C", "A2227T", "A2260G", "G2273A", "A2293G", "G2294A", "A2304G", "A2305G", "G2311A", "T2315G", "T2365A", "A2368G", "T2386C", "T2393A", "A2404C", "G2447A", "G2539A", "A2557G", "G2580A", "G2612A", "G2624A", "A2645G", "G2702A", "C2717T", "C2723T", "T2724G", "A2738T", "C2739A", "C2749A", "A2750G", "T2778A", "G2821C", "G2926A", "A2938G", "A2989G", "G3004A", "G3094A", "T3112C", "A3138T", "C3140T", "A3196G", "C3224A", "T3225C", "C3275T", "T3292A", "A3367G", "G3391A", "A3435G", "C3475T", "A3487G", "G3494A", "T3497A", "A3655G", "A3682C", "G3686A", "G3775A", "G3834A", "C3857T", "G3907A", "A3919G", "T3970C", "G3989A", "T4015C", "C4042T", "A4076C", "C4129T", "A4130G", "C4147T", "C4207T", "A4225G", "A4243T", "G4255A", "G4407A", "T4428C", "G4573A", "A4646C", "G4673T", "G4677A", "T4702C", "G4723A", "G4727C", "C4728A", "A4782G", "G4865T", "G4871A", "A4951G", "A4956T", "T4959C", "G4975A", "T5003C", "G5010A", "T5027C", "A5042C", "A5061G", "G5167T", "T5171C", "A5173G", "A5186C", "A5191G", "G5225A", "A5235T", "C5237T", "G5257A", "T5263G", "T5281C", "A5287G", "A5293C", "A5305G", "G5363A", "G5382A", "C5383G", "G5462A", "G5483T", "C5495A", "G5565A", "T5579C", "C5584T", "A5632T", "C5636T", "A5644G", "G5706A", "T5727C", "G5729A", "G5730T", "G5737A", "T5827A", "A5830G", "C5833T", "C5834T", "A5845G", "C5916A", "T5920C", "G5948T", "G5962A", "T6021A", "A6030T", "G6130A", "A6158G", "C6165T", "-6167G", "-6168G", "-6171T", "T6181-", "A6188G", "-6195C", "T6196C", "C6202-", "-6205G", "A6206T", "A6212T", "-6213C", "G6215C", "A6217G", "G6220T", "A6257G", "G6280A", "A6281C", "A6300C", "C6305T", "A6311T", "A6320C", "A6329C", "A6333G", "T6337A", "A6339G", "T6341G", "C6343T", "A6353C", "A6359G", "T6403A", "C6499T", "G6547A", "C6559T", "G6569A", "A6571G", "A6581G", "C6631T", "A6682G", "A6686G", "-6693G", "-6703A", "T6724G", "G6732A", "T6735A", "G6776A", "A6790C", "A6791G", "A6793G", "T6794A", "C6822T", "-6833C", "A6850T", "A6855C", "A6881G", "T6916C", "C6919T", "-6947A", "-6948A", "-6949T", "-6990T", "-6995C", "-6997A", "-6998T", "-6999C", "-7000T", "-7002A", "T7003G", "C7008T", "T7015C", "A7037G", "T7039G", "A7046C", "C7089A", "A7095T", "C7096A", "A7113G", "A7148C", "T7150G", "C7155A", "-7162C", "C7174T", "A7186G", "A7268G", "A7297G", "A7312G", "A7313C", "G7343A", "A7375G", "G7459A", "A7508C", "A7589G", "A7590C", "G7628A", "G7633A", "T7642G", "T7690G", "G7702C", "A7710C", "G7722A", "A7782G", "C7801T", "G7807A", "A7921T", "A7942C", "G7965A", "G7995A", "A7998G", "G8006A", "G8008C", "G8009A", "A8014G", "G8017C", "A8029G", "G8030A", "C8031G", "A8051C", "G8076A", "C8153T", "G8168A", "A8172T", "G8181T", "T8239A", "A8241G", "G8274C", "G8278A", "T8287A", "G8288A", "G8330C", "C8331T", "A8362G", "G8365A", "G8373C", "T8374C", "C8382T", "G8385A", "A8388G", "C8415G", "A8456C", "A8474C", "A8489C", "T8495C", "C8499G", "A8531T", "A8537G", "G8588A", "A8653G", "C8702T", "T8711C", "A8804G", "A8816G", "C8825T", "G8846A", "C8873A", "A8874G", "A8930G", "G8955A", "A9005G", "T9014C", "T9084G", "G9085T", "G9127C"], "INT": ["R20K", "V72I", "I101L", "T119A", "K156N", "R211K", "I218T"], "RT-p51": ["D6N", "M41L", "E44D", "V60I", "D67N", "K70R", "L74V", "L100I", "K103N", "V118I", "C162Y", "A173T", "D177N", "M184V", "E203K", "H208Y", "L210W", "T215Y", "D218E", "K219E", "L228H", "Q242H", "N348I", "L377T", "D399E"], "RT-p66": ["D6N", "M41L", "E44D", "V60I", "D67N", "K70R", "L74V", "L100I", "K103N", "V118I", "C162Y", "A173T", "D177N", "M184V", "E203K", "H208Y", "L210W", "T215Y", "D218E", "K219E", "L228H", "Q242H", "N348I", "L377T", "D399E", "N447S", "V467I", "S468T", "E529D", "V531I"], "gp120": ["T21N", "A32S", "V56E", "G59V", "N102D", "T104I", "N105G", "A106V", "-109T", "-110T", "-111N", "-112A", "-114T", "E122L", "P123N", "T135A", "K143Q", "Y149S", "L151F", "I153L", "I156L", "N159S", "N160S", "S162H", "N167H", "N169D", "D183E", "E239K", "I243V", "S278G", "-280R", "Y290L", "G293E", "D294K", "K312N", "T313A", "L314I", "E315K", "S323V", "-326P", "-329K", "K332N", "N334T", "I343V", "D365N", "-378N", "-379I", "-381Q", "-382S", "-383K", "T385I", "I395V", "M398L", "A412E", "N414I", "N420S", "N433G", "K472G"], "gp41": ["A14T", "I24M", "V69L", "N96A", "D109K", "D113E", "N129K", "R133N", "E136A", "N160S", "L206F", "G221E", "R231K", "D232G", "V235I", "A243S", "R258H", "L284F", "A289T", "Q290L", "S293I", "E313G", "R324T", "V329I", "A343L"], "nef": ["K7R", "S8N", "V11P", "P14S", "A15T", "I16V", "R22K", "P25A", "A27G", "E28D", "G29R", "E38D", "R49S", "P53A", "E63D", "K104R", "M168I", "D177E", "R178G", "D205N"], "p17": ["K18R", "L46I", "S54V", "Q63H", "L64I", "V92L", "E93D", "E99D", "-126A", "-127D", "V128K"], "p2": ["A11-", "V12T"], "p24": ["N74-", "D187E", "V191I", "A194S", "S225G"], "p6": ["P5I", "A39T", "S40A", "P49Q"], "p7": ["M1V", "R11K", "K20R", "R41K"], "pro": ["L10V", "I13V", "K20R", "D30N", "L33F", "I36L", "K45Q", "I50L", "L63P", "I64L", "A71V", "V82A", "N88D", "M89L"], "rev": ["R17K", "K32Q", "R53H", "G54Q", "S56G", "E57Q", "S61E", "E68A", "T102I", "R107H", "E111D"], "tat": ["L3V", "R29Q", "W36L", "T40K", "L68P", "P70S", "Q78P", "E86K"], "vif": ["M29I", "V31I", "F39S", "S46N", "R47S", "H48N", "I66V", "R93S", "K122R", "I124L", "S130N", "V142I", "T159A"], "vpr": ["E21D", "N28H", "Q44L", "H45Y", "I61M", "A93S"], "vpu": ["A6V", "I9L", "A10V", "I13V", "R41N", "E44K", "F74I", "I75V", "P76F", "N80D"]}, "labels": {"aa": "INT: R20K, V72I, I101L, T119A, K156N, R211K, I218T; RT-p51: D6N, M41L, E44D, V60I, D67N, K70R, L74V, L100I, K103N, V118I, C162Y, A173T, D177N, M184V, E203K, H208Y, L210W, T215Y, D218E, K219E, L228H, Q242H, N348I, L377T, D399E; RT-p66: D6N, M41L, E44D, V60I, D67N, K70R, L74V, L100I, K103N, V118I, C162Y, A173T, D177N, M184V, E203K, H208Y, L210W, T215Y, D218E, K219E, L228H, Q242H, N348I, L377T, D399E, N447S, V467I, S468T, E529D, V531I; gp120: T21N, A32S, V56E, G59V, N102D, T104I, N105G, A106V, -109T, -110T, -111N, -112A, -114T, E122L, P123N, T135A, K143Q, Y149S, L151F, I153L, I156L, N159S, N160S, S162H, N167H, N169D, D183E, E239K, I243V, S278G, -280R, Y290L, G293E, D294K, K312N, T313A, L314I, E315K, S323V, -326P, -329K, K332N, N334T, I343V, D365N, -378N, -379I, -381Q, -382S, -383K, T385I, I395V, M398L, A412E, N414I, N420S, N433G, K472G; gp41: A14T, I24M, V69L, N96A, D109K, D113E, N129K, R133N, E136A, N160S, L206F, G221E, R231K, D232G, V235I, A243S, R258H, L284F, A289T, Q290L, S293I, E313G, R324T, V329I, A343L; nef: K7R, S8N, V11P, P14S, A15T, I16V, R22K, P25A, A27G, E28D, G29R, E38D, R49S, P53A, E63D, K104R, M168I, D177E, R178G, D205N; p17: K18R, L46I, S54V, Q63H, L64I, V92L, E93D, E99D, -126A, -127D, V128K; p2: A11-, V12T; p24: N74-, D187E, V191I, A194S, S225G; p6: P5I, A39T, S40A, P49Q; p7: M1V, R11K, K20R, R41K; pro: L10V, I13V, K20R, D30N, L33F, I36L, K45Q, I50L, L63P, I64L, A71V, V82A, N88D, M89L; rev: R17K, K32Q, R53H, G54Q, S56G, E57Q, S61E, E68A, T102I, R107H, E111D; tat: L3V, R29Q, W36L, T40K, L68P, P70S, Q78P, E86K; vif: M29I, V31I, F39S, S46N, R47S, H48N, I66V, R93S, K122R, I124L, S130N, V142I, T159A; vpr: E21D, N28H, Q44L, H45Y, I61M, A93S; vpu: A6V, I9L, A10V, I13V, R41N, E44K, F74I, I75V, P76F, N80D"}}}, {"name": "HM026458", "node_attrs": {"div": 0.11573, "accession": "HM026458", "clade_membership": {"value": "CRF46_BF1"}, "country": {"value": "BR"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07BR_FPS783"}, "LANL_subtype": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A101T", "A161C", "T200G", "G317A", "G474A", "C477T", "T479C", "A510C", "G519A", "C520A", "C525T", "G542A", "G562A", "A569G", "A576G", "C662T", "C691A", "A697G", "G743A", "C767T", "G771C", "T978G", "A998G", "T1046A", "T1182C", "A1193G", "T1296C", "C1316T", "G1346A", "G1404A", "C1456A", "C1598T", "A1673G", "A1772G", "C1775G", "C1826T", "A2122C", "C2211A", "G2407A", "C2527T", "A2592G", "G2602T", "A2693G", "C2701T", "A2715C", "A2794G", "A2818G", "C2848T", "T3045C", "C3067A", "A3088G", "G3250A", "T3262C", "G3264A", "T3299A", "G3300C", "G3307A", "C3346A", "A3447G", "C3492T", "T3495C", "G3524T", "A3760G", "A3766G", "T3856C", "G3891A", "A3931T", "G3952A", "G3997A", "C4025A", "A4063C", "C4079T", "A4178G", "C4181A", "G4183T", "C4204T", "T4240C", "G4252A", "G4263A", "A4285G", "G4353A", "A4354C", "C4357T", "A4577C", "G4583C", "T4585C", "C4674T", "T4717A", "T4718C", "G4737A", "A4804T", "T4910C", "C4965G", "A4969G", "G4971A", "A4993C", "A5007C", "T5018C", "A5159G", "C5160T", "A5246G", "A5285G", "A5372G", "C5383A", "T5398C", "G5427A", "G5463A", "T5479C", "C5481A", "C5487T", "T5515C", "T5567A", "A5568C", "G5575A", "G5614T", "T5616C", "G5619A", "T5620G", "A5622G", "G5623A", "A5626-", "T5627-", "A5629G", "G5630C", "C5631T", "A5632-", "T5648C", "C5678T", "T5684C", "C5704T", "G5712A", "A5842G", "A5914C", "T5923C", "C5929T", "A5958G", "A5965C", "C5989T", "A6008G", "A6030G", "T6091C", "C6115T", "C6116T", "-6167A", "-6168A", "-6171C", "-6179A", "-6180A", "C6183G", "T6184A", "A6186C", "-6195G", "G6204-", "A6206-", "C6207-", "-6213T", "G6215T", "A6217C", "C6233A", "A6261T", "G6263A", "G6267A", "T6279C", "T6289A", "A6316G", "T6328G", "A6332G", "T6334G", "A6340C", "T6361C", "A6368T", "A6394C", "A6406G", "A6438T", "C6496T", "G6575A", "T6582C", "A6589G", "A6599T", "A6635G", "T6641C", "C6647T", "A6648G", "C6667T", "-6693C", "-6697G", "C6777A", "A6778G", "C6779G", "A6781C", "A6789C", "T6794C", "A6798G", "G6801A", "T6815C", "A6819G", "G6821T", "-6833T", "A6836G", "A6840G", "A6848C", "A6944G", "-6954G", "-6955A", "-6956A", "-6957T", "-6958C", "-6959A", "-6960A", "-6961T", "-6962A", "-6963T", "-6964T", "-6985C", "-6990A", "-6995G", "-6997C", "-6998A", "-6999A", "-7000C", "-7002G", "C7008A", "T7009C", "G7026A", "G7063A", "A7085G", "A7095G", "T7105C", "G7152A", "A7160G", "-7162A", "T7170C", "C7204T", "A7289C", "G7307A", "A7315G", "A7372G", "A7373G", "A7420G", "A7508G", "G7552A", "C7561T", "A7620G", "A7688G", "A7689G", "G7709C", "A7714G", "G7717A", "G7720A", "A7733C", "C7742A", "A7747T", "T7751C", "G7759T", "G7769A", "C7801A", "G7831A", "A7921G", "A7936G", "G7997A", "A8029C", "G8128A", "G8137T", "A8180G", "A8184G", "A8188G", "A8233G", "G8245A", "C8411T", "G8432A", "T8451C", "C8460A", "G8462A", "T8486C", "C8499T", "C8514T", "G8516A", "T8595G", "G8666C", "C8676T", "G8880A", "T8881C", "A8893G", "C8907T", "T8913C", "A8917G", "A8922C", "G8936A", "G8954A", "C8967T", "G8970A", "-9075T", "T9084C", "T9180A"], "INT": ["S39N", "L84I", "E96D", "I135V", "Q136N", "R163K", "G193D", "I268L", "D270H"], "RT-p51": ["A39E", "K166R", "E169D", "T200A", "E207A", "V317A", "D324E", "R390K", "W402T"], "RT-p66": ["A39E", "K166R", "E169D", "T200A", "E207A", "V317A", "D324E", "R390K", "W402T", "K451R", "A466V", "V467A", "A477S"], "gp120": ["K35R", "N52D", "-107N", "N108T", "-109N", "-110R", "-111T", "-112T", "-114S", "-116N", "Q127K", "E136V", "V137I", "R138K", "L142P", "H145Q", "N157-", "N159K", "N161E", "T172S", "Y195F", "D241N", "I243T", "I249F", "N261D", "S263P", "Q265W", "-280P", "I281M", "Y290F", "T308E", "Q309D", "K312T", "E315R", "R316K", "K322R", "-326S", "N327D", "-328R", "K332Q", "N364D", "D365-", "-379N", "-381D", "-382N", "-383S", "T385N", "R391Q", "I411V", "N414S", "N436E", "I439T", "K472R", "K479Q"], "gp41": ["V2I", "L4M", "I24V", "K106R", "D109E", "N129G", "R133K", "E136Q", "N140S", "K144Q", "Q147K", "E148D", "L152F", "A156T", "N166K", "M176I", "D232N", "R236G", "L242F", "S293G", "Q294R"], "nef": ["R22Q", "P53S", "L85V", "E108D", "V180T", "K184R", "F191L", "H192R", "M194L"], "p17": ["D47N", "P48S", "K59Q", "A62K", "R76K", "T81A", "A119E", "D121G"], "p2": ["A11N", "V13-"], "p24": ["A14P", "L83V"], "p6": ["D32E"], "rev": ["Y18T", "K30E", "R50K", "S61R", "E94K", "V97L", "E111G", "T114A"], "tat": ["L3I", "Y35Q", "Y47H", "I64N", "D67N", "Q76R"], "vif": ["H30Y", "F44Y", "V51I", "H73L", "H127D", "K128R", "V129I", "Q136P", "K141Q", "H192Y"], "vpr": ["T19V", "S41G", "N48D", "I61V", "A93D"], "vpu": ["D3Y", "L5V", "A6I", "I7-", "I9-", "A10-", "V14A", "T24I", "V26A", "I79V"]}, "labels": {"aa": "INT: S39N, L84I, E96D, I135V, Q136N, R163K, G193D, I268L, D270H; RT-p51: A39E, K166R, E169D, T200A, E207A, V317A, D324E, R390K, W402T; RT-p66: A39E, K166R, E169D, T200A, E207A, V317A, D324E, R390K, W402T, K451R, A466V, V467A, A477S; gp120: K35R, N52D, -107N, N108T, -109N, -110R, -111T, -112T, -114S, -116N, Q127K, E136V, V137I, R138K, L142P, H145Q, N157-, N159K, N161E, T172S, Y195F, D241N, I243T, I249F, N261D, S263P, Q265W, -280P, I281M, Y290F, T308E, Q309D, K312T, E315R, R316K, K322R, -326S, N327D, -328R, K332Q, N364D, D365-, -379N, -381D, -382N, -383S, T385N, R391Q, I411V, N414S, N436E, I439T, K472R, K479Q; gp41: V2I, L4M, I24V, K106R, D109E, N129G, R133K, E136Q, N140S, K144Q, Q147K, E148D, L152F, A156T, N166K, M176I, D232N, R236G, L242F, S293G, Q294R; nef: R22Q, P53S, L85V, E108D, V180T, K184R, F191L, H192R, M194L; p17: D47N, P48S, K59Q, A62K, R76K, T81A, A119E, D121G; p2: A11N, V13-; p24: A14P, L83V; p6: D32E; rev: Y18T, K30E, R50K, S61R, E94K, V97L, E111G, T114A; tat: L3I, Y35Q, Y47H, I64N, D67N, Q76R; vif: H30Y, F44Y, V51I, H73L, H127D, K128R, V129I, Q136P, K141Q, H192Y; vpr: T19V, S41G, N48D, I61V, A93D; vpu: D3Y, L5V, A6I, I7-, I9-, A10-, V14A, T24I, V26A, I79V"}}}]}, {"name": "CRF46_BF1_NODE_0000002", "node_attrs": {"div": 0.08199999999999999, "clade_membership": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A3058G", "C5544A", "-6205C"], "gp120": ["-107K", "H324Y", "T387I"], "gp41": ["V69I"]}, "labels": {"aa": "gp120: -107K, H324Y, T387I; gp41: V69I"}}, "children": [{"name": "HM026456", "node_attrs": {"div": 0.11134, "accession": "HM026456", "clade_membership": {"value": "CRF46_BF1"}, "country": {"value": "BR"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07BR_FPS625"}, "LANL_subtype": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T91A", "A161C", "T163A", "G317A", "G431A", "A437G", "C477T", "T495C", "A509G", "C531T", "G554A", "C583T", "G689A", "C767T", "T897C", "G924C", "T936C", "A943G", "A945G", "C946G", "G972T", "A980T", "C984A", "G989T", "A1208G", "G1404A", "G1419A", "C1444T", "C1456A", "A1464C", "A1543G", "G1726A", "T1728A", "G1731A", "C1756A", "A1857G", "A1979G", "G2023A", "G2180A", "A2210G", "A2233G", "G2311A", "G2362A", "G2392T", "A2406G", "G2431A", "A2459C", "T2494A", "G2524A", "T2542G", "C2584T", "C2626G", "C2671T", "A2710G", "G2714A", "A2716C", "A2764G", "C2776T", "G2837A", "C2845G", "A2919G", "A2923G", "A3080T", "C3175T", "A3199G", "G3221T", "A3247G", "C3252T", "G3264A", "C3445T", "A3451G", "G3524T", "G3574A", "A3629C", "G3643C", "A3666T", "T3695G", "A3727G", "A3760G", "A3770G", "G3805C", "A3825G", "G3859A", "A3890G", "G3891C", "T3977C", "G3985A", "G3989A", "C4079T", "C4132T", "C4180T", "A4225G", "A4231G", "G4263A", "C4321T", "A4375C", "A4646T", "C4674T", "T4717A", "G4723C", "G4766T", "G4767A", "C4771A", "A4774C", "A4775C", "A4778G", "G4799A", "G4856A", "A4878G", "G4888A", "T4925C", "A4937C", "T4967A", "A5036G", "A5046G", "T5203C", "G5225A", "A5233G", "T5245C", "G5269A", "G5296A", "T5336G", "A5372G", "A5385G", "T5479C", "C5481A", "A5491G", "C5492T", "C5511A", "A5545G", "A5548C", "A5632T", "T5684C", "A5689T", "G5699A", "G5700A", "G5730A", "G5737A", "A5739G", "A5787T", "T5788G", "T5789C", "G5790A", "C5792A", "A5793G", "C5795A", "C5797T", "T5799G", "G5801C", "G5802A", "A5804C", "A5806C", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5839A", "T5847C", "A5856G", "G5858A", "C5869A", "T5870C", "A5881G", "A5907G", "A5956C", "T5964C", "C6026A", "A6030G", "T6046C", "A6065C", "A6066C", "T6101C", "C6116T", "G6130A", "T6155C", "A6158G", "T6160G", "A6164-", "C6165-", "T6166-", "T6169-", "C6177A", "C6178T", "-6179G", "-6180C", "A6182G", "T6184C", "T6187A", "A6194G", "-6195A", "C6202A", "-6203G", "C6207T", "-6213G", "C6222A", "G6274A", "A6323G", "A6324G", "A6326G", "G6338A", "A6339C", "C6363G", "G6442A", "C6469T", "A6502T", "T6602A", "C6618T", "C6670T", "T6690-", "-6697A", "-6698C", "-6699A", "-6700A", "-6701A", "-6702T", "-6703A", "-6809G", "G6820T", "G6821T", "-6833A", "-6834T", "A6839G", "A6868G", "G6871A", "-6947G", "-6948A", "-6949C", "-6950A", "-6951C", "-6952A", "-6953G", "-6954G", "-6955A", "-6956T", "-6957C", "-6958C", "-6959A", "-6960A", "-6961C", "-6962A", "-6963A", "-6964T", "C6991-", "C6993-", "A7001-", "T7003-", "C7006G", "C7014T", "C7025A", "T7039G", "G7040A", "T7081C", "A7085G", "A7111G", "A7148C", "A7149C", "A7154-", "C7155-", "T7156-", "-7162G", "G7166C", "G7168A", "A7190G", "T7222C", "G7256A", "G7269A", "A7290C", "A7313C", "A7315G", "T7321G", "T7406G", "G7495A", "C7597T", "A7621G", "T7622A", "G7630T", "G7631C", "G7640C", "T7642G", "A7673G", "A7680G", "A7693G", "G7709A", "A7710C", "G7717A", "G7720A", "A7747T", "G7759T", "T7774C", "G7862A", "A7891G", "T7929A", "A7943G", "G7944A", "G7961A", "A7962G", "A8002G", "A8029C", "G8130A", "C8171T", "A8172G", "A8180G", "G8242A", "G8255A", "T8293C", "A8305G", "A8323G", "A8353T", "G8354A", "A8362G", "T8369A", "T8375A", "A8388G", "T8440C", "A8468G", "G8476A", "C8491A", "T8505G", "A8531T", "A8555G", "T8582C", "A8597G", "T8644C", "A8663T", "T8675C", "G8678T", "G8787A", "A8792C", "A8806G", "G8846A", "C8873A", "C8904A", "T8918C", "T8923G", "G8924A", "G8945C", "G8955A", "C8967T", "A9005G", "T9014C", "C9017T", "T9029A", "-9075T", "T9115C"], "INT": ["E10D", "N17S", "S39A", "V72I", "G163K"], "RT-p51": ["E29K", "K104R", "K122Q", "D177E", "E207N", "D248N", "D250E", "K275R", "I329L", "A376S", "T386I", "R390K"], "RT-p66": ["E29K", "K104R", "K122Q", "D177E", "E207N", "D248N", "D250E", "K275R", "I329L", "A376S", "T386I", "R390K", "A477S", "K512Q", "E516D", "Q524L", "S534A", "I559V"], "gp120": ["N1S", "A2-", "-3T", "N5K", "K18R", "E34D", "V37A", "V56I", "L58M", "N71P", "N102E", "T104N", "N105A", "-109D", "-110T", "-111Q", "-112K", "-117G", "-118I", "-119L", "-120R", "-121E", "P123Q", "N157G", "N158D", "N161S", "S162T", "T170S", "S250T", "T255I", "-280Q", "T308A", "-319A", "K322N", "-326I", "-328E", "-366T", "-376G", "-377S", "-378N", "-379N", "-380E", "D384-", "I395M", "V396I", "I411V", "N432P", "N433G", "N435K", "N436T", "T437Q", "E438-", "N446D", "V468I", "K479T"], "gp41": ["M7L", "S35A", "S107T", "E110Q", "D113Q", "I124V", "N126S", "E136T", "N140S", "E148D", "L152F", "V187I", "R214E", "E220R", "R236G", "L242F", "R276K", "Q290W", "S293G", "V318I"], "nef": ["K4I", "K7R", "S9R", "I16V", "V33A", "S45N", "A50D", "L55V", "E63D", "I101T", "Q107H", "D149N", "K155R", "M168I", "D177E", "R188S", "M194R", "E201D", "Y202F", "D205N"], "p1": ["H9N"], "p17": ["P48S", "S54P", "P66S", "A83V"], "p2": ["A7V", "A11N", "V13L"], "p24": ["A65P", "D71G", "T72G", "D81Y", "L83F", "P85T", "V230I"], "p6": ["G16E", "F17I", "G18R", "P23-", "S24P", "P25S", "-26Q"], "p7": ["K26R"], "pro": ["K20R", "N61D"], "rev": ["E11D", "K32R", "R38Q", "I52V", "S61R", "A108V", "E111G"], "tat": ["Y35Q", "T39V", "R57G", "T58P", "G79R", "K85E"], "vif": ["H30Y", "F44Y", "S46T", "E60D", "E61K", "A62D", "K63T", "I98V", "G101D", "E117D", "H127Q", "I154V"], "vpr": ["E6G", "H77Q", "S94G"], "vpu": ["I9L", "V26A", "I28L", "R31K", "E44K", "D78N"]}, "labels": {"aa": "INT: E10D, N17S, S39A, V72I, G163K; RT-p51: E29K, K104R, K122Q, D177E, E207N, D248N, D250E, K275R, I329L, A376S, T386I, R390K; RT-p66: E29K, K104R, K122Q, D177E, E207N, D248N, D250E, K275R, I329L, A376S, T386I, R390K, A477S, K512Q, E516D, Q524L, S534A, I559V; gp120: N1S, A2-, -3T, N5K, K18R, E34D, V37A, V56I, L58M, N71P, N102E, T104N, N105A, -109D, -110T, -111Q, -112K, -117G, -118I, -119L, -120R, -121E, P123Q, N157G, N158D, N161S, S162T, T170S, S250T, T255I, -280Q, T308A, -319A, K322N, -326I, -328E, -366T, -376G, -377S, -378N, -379N, -380E, D384-, I395M, V396I, I411V, N432P, N433G, N435K, N436T, T437Q, E438-, N446D, V468I, K479T; gp41: M7L, S35A, S107T, E110Q, D113Q, I124V, N126S, E136T, N140S, E148D, L152F, V187I, R214E, E220R, R236G, L242F, R276K, Q290W, S293G, V318I; nef: K4I, K7R, S9R, I16V, V33A, S45N, A50D, L55V, E63D, I101T, Q107H, D149N, K155R, M168I, D177E, R188S, M194R, E201D, Y202F, D205N; p1: H9N; p17: P48S, S54P, P66S, A83V; p2: A7V, A11N, V13L; p24: A65P, D71G, T72G, D81Y, L83F, P85T, V230I; p6: G16E, F17I, G18R, P23-, S24P, P25S, -26Q; p7: K26R; pro: K20R, N61D; rev: E11D, K32R, R38Q, I52V, S61R, A108V, E111G; tat: Y35Q, T39V, R57G, T58P, G79R, K85E; vif: H30Y, F44Y, S46T, E60D, E61K, A62D, K63T, I98V, G101D, E117D, H127Q, I154V; vpr: E6G, H77Q, S94G; vpu: I9L, V26A, I28L, R31K, E44K, D78N"}}}, {"name": "CRF46_BF1_NODE_0000003", "node_attrs": {"div": 0.08745999999999998, "clade_membership": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T595A", "C698A", "G2602T", "A2818G", "A4130C", "A4262G", "A5299G", "-6203A", "A6330G", "A6807G", "C6810G", "A6811C", "T6815G", "A6817T", "G6820A", "C6822T", "T6823C", "A6825C", "T6826A", "C6829T", "-6830C", "-6831C", "-6832C", "G6935A", "-6988T", "-6989G", "T7322A", "A7426G", "T7433C", "G7627T", "A7782G", "A7943C", "G7995A", "T9084A"], "INT": ["T119P"], "gp120": ["A106L", "N108E", "N159S", "S162N", "N327-", "-329K"], "gp41": ["Q108H", "N160S", "R231K"], "p17": ["F87Y", "D121E"], "p2": ["V12T"], "p24": ["A14S"], "rev": ["K32T"], "tat": ["Q78H"]}, "labels": {"aa": "INT: T119P; gp120: A106L, N108E, N159S, S162N, N327-, -329K; gp41: Q108H, N160S, R231K; p17: F87Y, D121E; p2: V12T; p24: A14S; rev: K32T; tat: Q78H"}}, "children": [{"name": "CRF46_BF1_NODE_0000004", "node_attrs": {"div": 0.09259999999999999, "clade_membership": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C507A", "G614T", "T875C", "G989A", "C1013T", "G1828A", "T2975C", "G3190A", "A3766G", "A3808G", "G5167A", "C5461T", "A5613T", "G6050A", "A6065G", "-6170G", "-6171T", "-6173A", "-6174A", "-6175T", "-6179A", "G6303A", "T6331C", "G6336A", "T6690-", "-6697A", "-6698C", "-6699A", "-6701A", "-6702T", "G6714A", "A6757C", "-6983T", "-6986A", "-6987A", "-6990A", "-6992A", "-7002A", "T7153G", "T7170C", "A7265T", "A7289C", "A7641G", "A7676G", "G7677A", "C7742A", "G7868A", "G8009A", "A8188G", "A8487G", "G8488C", "G8589C", "T8606C"], "RT-p51": ["S294P"], "RT-p66": ["S294P"], "gp120": ["D66N", "N71D", "R150K", "I439T", "T471S", "K472R", "K479Q"], "gp41": ["D113G", "S125D", "Q147K", "A189T", "H209L"], "nef": ["E28D", "R49A", "E63D"], "p17": ["E93D"], "p6": ["W50*"], "rev": ["G54E", "T114A"], "tat": ["R29W"], "vpr": ["E6G", "S41G"], "vpu": ["M71V"]}, "labels": {"aa": "RT-p51: S294P; RT-p66: S294P; gp120: D66N, N71D, R150K, I439T, T471S, K472R, K479Q; gp41: D113G, S125D, Q147K, A189T, H209L; nef: E28D, R49A, E63D; p17: E93D; p6: W50*; rev: G54E, T114A; tat: R29W; vpr: E6G, S41G; vpu: M71V"}}, "children": [{"name": "DQ358801", "node_attrs": {"div": 0.12280999999999999, "accession": "DQ358801", "clade_membership": {"value": "CRF46_BF1"}, "country": {"value": "BR"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01BR087"}, "LANL_subtype": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A150C", "A303T", "G365C", "A388G", "A423C", "G424A", "G474A", "A524G", "T549A", "T610A", "G620A", "C623T", "G651A", "A664G", "G689A", "A698G", "G771T", "G810A", "C893A", "G956T", "A998G", "T1046A", "G1067A", "T1296C", "A1349G", "A1367G", "G1405C", "A1452G", "A1464C", "A1476G", "T1501G", "T1517C", "A1543G", "A1595T", "A1656G", "C1670A", "G1691A", "C1692A", "A1733-", "G1734-", "A1735-", "G1736A", "A1740G", "T1741C", "A1742G", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "C1775A", "C1826T", "C1831T", "A1918G", "A1934T", "T1978G", "A1979G", "A1982G", "T2035C", "T2043C", "T2083C", "C2149T", "C2199T", "A2200G", "A2210G", "A2216T", "G2294A", "A2304G", "T2464A", "G2498A", "C2527T", "A2627C", "A2734C", "A2738T", "C2739A", "T3022C", "T3045C", "G3058T", "A3142G", "G3154A", "G3206A", "C3266T", "C3275T", "G3477A", "A3484G", "C3504T", "T3505A", "C3589T", "A3604G", "C3665G", "A3682C", "G3805A", "T3844C", "T3850C", "T3977C", "C4024T", "A4159G", "C4162T", "C4207T", "C4286T", "T4412C", "T4712C", "C4715T", "G4727A", "A4765G", "A4773G", "A4869T", "C4902A", "A4956C", "A4969G", "T5018C", "A5036C", "T5147C", "C5214A", "C5237T", "A5247G", "A5287C", "G5299A", "C5397A", "T5398G", "C5412T", "A5447G", "G5543A", "A5544C", "G5619A", "C5624T", "A5632T", "C5704A", "G5706A", "G5730T", "G5737A", "A5806G", "C5869T", "G5893A", "G5948T", "A5959G", 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"S225A"], "p6": ["P5T", "E19-", "I21A", "T22I", "P23T", "S24P", "P25S", "-26P", "D32E", "S51L"], "p7": ["S4G", "I12S", "K26R"], "pro": ["M46L", "D60E", "N61D", "I62V", "V82A"], "rev": ["E10T", "Y28P", "E68A", "E94A", "E111G"], "tat": ["N7K", "L8V", "K24R", "R56H", "I74S", "S87*"], "vif": ["E60G", "K63E", "R95W", "L106M", "I124L", "K128R"], "vpr": ["Y15H", "P37Q", "H45Y", "N48S"], "vpu": ["A6V", "I9L", "L33I", "R41S", "E44K", "A61E"]}, "labels": {"aa": "INT: H171Y; RT-p51: T35M, M41L, D67N, K70R, D123E, V135I, E169D, I178L, T215Y, V317A, A371T; RT-p66: T35M, M41L, D67N, K70R, D123E, V135I, E169D, I178L, T215Y, V317A, A371T, R461K, T470I, Q524E, E529D; gp120: A32S, N52D, L83V, N102H, T104I, L106V, K107N, E108T, -109T, -110T, -111N, -112S, -113T, -114Q, -115R, -116S, -117S, -118T, -119L, -120K, -121E, P123T, Q141R, K143Q, P155A, N158D, N160K, N162E, T174K, N201R, K212N, E239K, E240G, I243V, S250T, Q265W, -280H, R287Q, D294E, K312T, E315G, -319E, S323V, -326Q, -327N, K332N, N364Q, D365-, -368F, -369N, -370D, -371T, -372D, -373S, -374N, N432Q, N433D, N436D, T437I, E464N, V468I; gp41: V2A, L4I, G5A, A6V, F8L, L9F, I24M, T25A, K77R, D109N, N129D, E130V, E148D, K154S, S160N, I210L, G225E, D272G, R276Q, S293G, A321V, A343L; nef: N3S, W5L, S9K, P14S, A15T, L20I, T23A, V33A, P53T, L55V, A83S, T138C, K155R, A156S, N157T, S169N, E174D, R188S, M194R, E201D, Y202F, C206*; p1: H9D; p17: K18R, R30Q, D47N, S72T, V92E, E106K, K110R; p2: T10-, M14L; p24: V27I, E75D, S225A; p6: P5T, E19-, I21A, T22I, P23T, S24P, P25S, -26P, D32E, S51L; p7: S4G, I12S, K26R; pro: M46L, D60E, N61D, I62V, V82A; rev: E10T, Y28P, E68A, E94A, E111G; tat: N7K, L8V, K24R, R56H, I74S, S87*; vif: E60G, K63E, R95W, L106M, I124L, K128R; vpr: Y15H, P37Q, H45Y, N48S; vpu: A6V, I9L, L33I, R41S, E44K, A61E"}}}, {"name": "MG365771", "node_attrs": {"div": 0.11560999999999999, "accession": "MG365771", "clade_membership": {"value": "CRF46_BF1"}, "country": {"value": "BR"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01BRRJUD508"}, "LANL_subtype": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T30C", "C96T", "T153A", "T154A", "A161T", "T200G", "T201C", "A286G", "G354A", "T495C", "T572C", "A607G", "G677A", "A755C", "C767T", "G806A", "T902C", "C1004T", "T1046G", "C1118A", "G1346A", "G1355A", "A1455G", "T1457A", "-1458G", "-1459C", "-1460T", "G1461A", "A1532C", "A1656C", "C1670G", "T1682C", "A1687G", "A1701T", "C2211A", "G2273A", "A2329G", "A2350G", "T2602G", "C2626A", "A2743C", "A2764G", "C2985T", "G3094A", "A3124G", "A3199G", "G3250A", "C3252T", "G3264A", "A3370G", "G3564A", "G3569A", "A3601C", "G3694A", "G3907A", "A3913G", "T3940C", "T3946C", "T4018C", "G4021A", "A4027G", "T4198C", "C4204T", "A4219G", "T4276G", "C4321T", "A4391T", "G4407A", "G4409A", "A4410T", "C4643T", "G4737A", "G4802A", "T4967G", "G5030A", "A5046G", "T5078C", "G5087A", "C5102T", "C5227A", "G5296A", "A5360G", "G5370T", "A5373G", "T5384C", "T5391C", "C5425A", "A5448G", "T5451C", "C5530T", "A5548T", "G5565A", "T5579C", "C5704G", "A5787T", "T5788G", "T5789C", "G5790A", "C5792A", "A5793G", "C5795A", "C5797T", "T5799G", "G5801C", "G5802A", "A5806C", "G5808T", "-5815G", "-5816A", "-5817A", "-5818G", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5830C", "C5924T", "A5956C", "A5958C", "C5974T", "T5986C", "A6020C", "G6023C", "T6024C", "T6134A", "A6159C", "T6166C", "-6167G", "-6168C", "-6172C", "-6180G", "C6183G", "-6195G", "A6200C", "C6202A", "A6203G", "G6204A", "C6207G", "C6209A", "T6210C", "G6211C", "A6212C", "-6213T", "G6215A", "A6217G", "G6226A", "G6338A", "A6340T", "A6489G", "A6500T", "A6544G", "A6574G", "T6598C", "C6632T", "A6664G", "-6700A", "-6703G", "C6713A", "G6773A", "G6776T", "A6786G", "T6787G", "A6788G", "A6790C", "C6792G", "A6793G", "T6794A", "G6801A", "A6849C", "T6863G", "G6936A", "-6947A", "-6948A", "-6949T", "-6950G", "-6951A", "-6952C", "-6977A", "-6978C", "-6979A", "-6980G", "-6981G", "-6982A", "-6984C", "-6985C", "-6994T", "-6995A", "-6996C", "-6997A", "-6998G", 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"T216S", "L260F", "I281-", "-282Q", "-283M", "R287K", "G307R", "T308-", "Q309-", "W310-", "N311-", "K312-", "T313-", "L314-", "E315-", "R316-", "V317-", "K318-", "-328N", "K332T", "S337A", "G361K", "D365N", "-366D", "-367T", "-376G", "-377S", "-378N", "-379D", "-380T", "-381T", "-382G", "-383S", "I387T", "I395V", "N414R", "N433E", "N434T", "N436Q", "G443E", "E464Q", "Q476P"], "gp41": ["Q80R", "L91H", "P98R", "D109G", "E119Q", "S128T", "N140S", "A151E", "A156T", "S157N", "S165T", "N166H", "R172K", "M176I", "P213Q", "G226D", "N239H", "D247T", "H259L", "R277G", "G314W", "I319L"], "nef": ["E65D", "A83L", "A84G", "Y120I", "I133T", "Y135F", "D177E", "Y203F"], "p17": ["V7I", "S54P", "K91R"], "p2": ["T12A", "V13I"], "p24": ["S14A", "S225G"], "p6": ["N3S", "T8S"], "rev": ["E11D", "R17K", "T32E", "E57T", "G65D", "E95R", "V97L", "R107C", "A108T"], "tat": ["L3P", "Q17K", "R52W", "T58S", "L68P", "I74L", "H78R"], "vif": ["V51I", "H127Q", "I154V"], "vpr": ["V89L", "R90G", "S96P"], "vpu": ["L33V", "A66E", "I75L"]}, "labels": {"aa": "INT: D167E, T206S, R211K, E212I; RT-p51: A39K, V60I, D177E, A297V, T386I, R390K; RT-p66: A39K, V60I, D177E, A297V, T386I, R390K, G490E, E492K; gp120: E34D, K35T, V56L, V57P, G59E, L94I, N102T, N105A, K212R, T216S, L260F, I281-, -282Q, -283M, R287K, G307R, T308-, Q309-, W310-, N311-, K312-, T313-, L314-, E315-, R316-, V317-, K318-, -328N, K332T, S337A, G361K, D365N, -366D, -367T, -376G, -377S, -378N, -379D, -380T, -381T, -382G, -383S, I387T, I395V, N414R, N433E, N434T, N436Q, G443E, E464Q, Q476P; gp41: Q80R, L91H, P98R, D109G, E119Q, S128T, N140S, A151E, A156T, S157N, S165T, N166H, R172K, M176I, P213Q, G226D, N239H, D247T, H259L, R277G, G314W, I319L; nef: E65D, A83L, A84G, Y120I, I133T, Y135F, D177E, Y203F; p17: V7I, S54P, K91R; p2: T12A, V13I; p24: S14A, S225G; p6: N3S, T8S; rev: E11D, R17K, T32E, E57T, G65D, E95R, V97L, R107C, A108T; tat: L3P, Q17K, R52W, T58S, L68P, I74L, H78R; vif: V51I, H127Q, I154V; vpr: V89L, R90G, S96P; vpu: L33V, A66E, I75L"}}}]}, {"name": "CRF46_BF1_NODE_0000005", "node_attrs": {"div": 0.08959999999999999, "clade_membership": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G317A", "C520G", "G1709A", "A2693G", "A5085C", "G5121A", "G5225A", "G6029A", "G6263T", "T6337A", "-6689A", "-6691A", "T6694A", "C7108T", "G7151A", "A7163-", "G7269A", "A7508C", "T7929A", "C8491A"], "RT-p51": ["A39T", "T200A"], "RT-p66": ["A39T", "T200A"], "gp120": ["V56M", "G59K", "V137L", "N157S", "N160S", "N201K", "T308A", "K318R", "G361R", "N433S"], "gp41": ["I69L"], "nef": ["A50D"], "p17": ["A62G"], "rev": ["V16I"], "vif": ["K167Q", "E179K"]}, "labels": {"aa": "RT-p51: A39T, T200A; RT-p66: A39T, T200A; gp120: V56M, G59K, V137L, N157S, N160S, N201K, T308A, K318R, G361R, N433S; gp41: I69L; nef: A50D; p17: A62G; rev: V16I; vif: K167Q, E179K"}}, "children": [{"name": "HM026460", "node_attrs": {"div": 0.12754, "accession": "HM026460", "clade_membership": {"value": "CRF46_BF1"}, "country": {"value": "BR"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07BR_FPS812"}, "LANL_subtype": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A150C", "C151A", "A152-", "T200G", "T201C", "A227T", "A398G", "A440G", "C456T", "T479G", "T495G", "C507T", "A509G", "T575C", "A595T", "G614A", "T636G", "A678G", "C681A", "A698C", "G771A", "C772A", "T773C", "T774A", "T861G", "T884C", "A887G", "C1004T", "T1037C", "A1088C", "C1091T", "G1192A", "A1240G", "A1263T", "T1296C", "A1329G", "C1330T", "T1334C", "C1342G", "C1350A", "G1404A", "A1418G", "A1442C", "A1455G", "A1492C", "T1501A", "G1503A", "A1536C", "A1564G", "C1610T", "T1676C", "A1715G", "C1782T", "C1784A", "A1857G", "C1987T", "T2013C", "G2038A", "G2065A", "G2173A", "A2230G", "A2241G", "C2281T", "G2407A", "A2491T", "G2498A", "T2499C", "G2560A", "A2599G", "A2601C", "A2627C", "C2635T", "A2645G", "A2698G", "C2701T", "A2716G", "A2726G", "A2727C", "G2902A", "C2942A", "G2951A", "G3010A", "A3028G", "A3096T", "A3103G", "A3138T", "T3170A", "A3193G", 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{"aa": "INT: V32I, G134N, S205A, T206S, I208M, V259I; RT-p51: K49R, V135T, E169A, I178L, M184V, K211A, L283I, A286T, Q334L, N348I, S359T, L377R, T386I, D399E; RT-p66: K49R, V135T, E169A, I178L, M184V, K211A, L283I, A286T, Q334L, N348I, S359T, L377R, T386I, D399E, L484I, S491P; gp120: A2G, T21N, V57D, D66N, V73A, S87F, T100R, -109D, -110E, E122-, P123-, Q127K, R138L, L142Q, K143Q, H145L, L151R, S159I, D202E, K203E, K204N, P210L, K212R, E240K, S246F, D251N, K254G, T255S, S278R, -280T, I281M, A288V, F289Y, G307E, K312I, N334D, S336P, -366T, -367G, -368S, -369R, -370S, -371N, T437-, V468I, K474R, Q476R, K479A; gp41: L9I, F11I, N42S, L81I, E110D, D113G, E119A, E136Q, N140S, E148D, L152F, S160T, S165T, R172K, K231R, R236G, L244I, V245I, H259L, R273K, Q290H, V318I, A325G, V329I; nef: N3G, R19K, G29R, V30E, G31R, V33G, S34Y, R40Q, I43A, T44S, N51T, D54E, L55-, A56-, W57-, L58-, E59-, A60-, Q61-, A83G, L85F, H89F, E98D, Y102H, Y120F, D149P, K155R, E174D, D177E, R188H, F191Y, Y202F; p1: H9N; p17: I35M, S54A, R58W, Y87F, L101V, T115A, Q116K, E121D; p2: Q6H, T12V, V13-; p24: S14N, L15I, S44A, R154K, K170R, T178S, T200V, A204G, P207T; p7: Q9P, I12N, V13I, I24L, K33R; pro: K20R, I72T, M89I; rev: A15V, Y18T, S61G, S62D, C63Y, E68A, V109L; tat: L3I, T23N, Y35Q, W36R, S62N, I64N, L68F; vif: R50K, V51I, E60D, H73N, R93K, E117D, I124L, I154V, K160R, K176E; vpr: Q3R, T19A, N28S, I60L, I84M, V89I, A93N; vpu: D3Y, L4V, A19V, R41K, E44Q, E48D, P76L, D78N, N80D"}}}, {"name": "CRF46_BF1_NODE_0000006", "node_attrs": {"div": 0.09289999999999998, "clade_membership": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G771T", "G810A", "C1060A", "A1543G", "T1783A", "T1785A", "G2311A", "G3907A", "G5427A", "C5624T", "A5629G", "C5989T", "A6188G", "C6247T", "-6692C", "A6793G", "A6798G", "A6926G", "-6995G", "-6996T", "-6997A", "-7000C", "-7002A", "C7096A", "A7157G", "A7921G", "A7974G", "T8322C", "T8400A", "G8407A", "C8415A", "T8594C", "C8720T", "T8740C", "A8746T", "T8947A"], "RT-p51": 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"T6988-", "G6989-", "C6991-", "C6993-", "-6998G", "-6999T", "C7014T", "A7069G", "C7078T", "A7095C", "C7101A", "T7105C", "G7152C", "C7155T", "T7159A", "A7161C", "-7162C", "-7163T", "T7165C", "T7170C", "G7183A", "C7204T", "G7244A", "A7245G", "G7270C", "G7271T", "A7322G", "T7325A", "C7328T", "T7334C", "A7373C", "T7403C", "A7533G", "G7534A", "A7583C", "T7610-", "T7627G", "G7628C", "G7640A", "T7642C", "G7658C", "G7717A", "G7722A", "A7800G", "C7805T", "G7831A", "T7865C", "A8014G", "A8029T", "G8030T", "C8048T", "G8130A", "C8146T", "C8153T", "T8206C", "C8213T", "A8224C", "G8243T", "A8258C", "C8265T", "C8277T", "G8288A", "A8294C", "T8321G", "G8335A", "C8336A", "A8350G", "T8387C", "A8446G", "A8494C", "T8505C", "A8597G", "T8600C", "C8648T", "T8675C", "A8777G", "A8794G", "G8798A", "A8804G", "A8806G", "A8819G", "A8837G", "C8967T", "G9007A", "G9016C"], "INT": ["V31I", "I60M", "V72I", "I73V", "K111R", "P119T", "H171Y"], "RT-p51": ["E36A", "V135I", "C162Y", "A173T", "Y181C", "W239C", "F346L", "S359T", "L377I"], "RT-p66": ["E36A", "V135I", "C162Y", "A173T", "Y181C", "W239C", "F346L", "S359T", "L377I", "S468P"], "gp120": ["K18R", "T23N", "A32S", "N52S", "M56I", "V57E", "N60G", "N102I", "L137I", "K143N", "H145S", "R150K", "N158S", "S160T", "N161K", "N162G", "I166L", "K201T", "D202N", "K204R", "K212Q", "K224R", "D241G", "I244V", "A253T", "E262K", "S263A", "Q265Y", "I281-", "-282Q", "-283M", "A291T", "D294E", "D297N", "H302Y", "N304L", "S306N", "A308P", "K312E", "E315R", "R316G", "K332E", "N334S", "S335P", "S337A", "I343V", "S347N", "D365L", "-366T", "-367L", "-368F", "-369D", "-370R", "-371T", "-372V", "-373V", "-374N", "N414T", "T416N", "S433T", "N434I", "N435E", "N436T", "T437S", "I439T", "E464R", "K472N", "A473S"], "gp41": ["M7V", "F8I", "L9F", "F11L", "I24L", "K77R", "T94P", "W103-", "E119Q", "N166S", "M176I", "F188L", "R236G", "L242F", "A243S", "R276K", "L284F", "L304F", "G314W", "I319L", "A321V", "A325V", "V329I", "N331H", "L345I"], "nef": ["N3S", "Q35R", "N51T", "E151G", "K155R"], "p1": ["H9S"], "p17": ["I35L", "P48S", "Y87C", "E93G"], "p2": ["A11-", "M14L"], "p6": ["L35H", "Y36N", "S51L"], "pro": ["T12A", "I72V"], "rev": ["E10I", "E11K", "K14E", "I16A", "Y18V", "S56G", "S61F", "P67L", "P100S", "T102I"], "tat": ["K24R", "R56H", "R57K", "Q60R", "I64S", "L68F"], "vif": ["A35T", "A62D", "L64V", "I109T", "Y110H", "K122R", "H127Y", "T151R", "G185E"], "vpr": ["H45Y"], "vpu": ["E44K", "D78N"]}, "labels": {"aa": "INT: V31I, I60M, V72I, I73V, K111R, P119T, H171Y; RT-p51: E36A, V135I, C162Y, A173T, Y181C, W239C, F346L, S359T, L377I; RT-p66: E36A, V135I, C162Y, A173T, Y181C, W239C, F346L, S359T, L377I, S468P; gp120: K18R, T23N, A32S, N52S, M56I, V57E, N60G, N102I, L137I, K143N, H145S, R150K, N158S, S160T, N161K, N162G, I166L, K201T, D202N, K204R, K212Q, K224R, D241G, I244V, A253T, E262K, S263A, Q265Y, I281-, -282Q, -283M, A291T, D294E, D297N, H302Y, N304L, S306N, A308P, K312E, E315R, R316G, K332E, N334S, S335P, S337A, I343V, S347N, D365L, -366T, -367L, -368F, -369D, -370R, -371T, -372V, -373V, -374N, N414T, T416N, S433T, N434I, N435E, N436T, T437S, I439T, E464R, K472N, A473S; gp41: M7V, F8I, L9F, F11L, I24L, K77R, T94P, W103-, E119Q, N166S, M176I, F188L, R236G, L242F, A243S, R276K, L284F, L304F, G314W, I319L, A321V, A325V, V329I, N331H, L345I; nef: N3S, Q35R, N51T, E151G, K155R; p1: H9S; p17: I35L, P48S, Y87C, E93G; p2: A11-, M14L; p6: L35H, Y36N, S51L; pro: T12A, I72V; rev: E10I, E11K, K14E, I16A, Y18V, S56G, S61F, P67L, P100S, T102I; tat: K24R, R56H, R57K, Q60R, I64S, L68F; vif: A35T, A62D, L64V, I109T, Y110H, K122R, H127Y, T151R, G185E; vpr: H45Y; vpu: E44K, D78N"}}}, {"name": "DQ358802", "node_attrs": {"div": 0.12012999999999999, "accession": "DQ358802", "clade_membership": {"value": "CRF46_BF1"}, "country": {"value": "BR"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01BR125"}, "LANL_subtype": {"value": "CRF46_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G121A", "G137A", "A161T", "T200C", "A286G", "A426C", "G431A", "C435T", "A438G", "G474A", "G562A", "A607G", "C669A", "G671A", "C672A", "G806A", "C1013T", "A1025G", "C1061T", "G1067A", "A1112G", "A1142C", "T1181C", "G1184A", "C1235T", "A1367G", "A1418G", "A1452G", "T1501G", "G1503A", "A1536C", "G1552A", "A1656C", "A1673G", "G1697A", "C1744A", "A1772G", "C1775G", "G1828A", "A1839G", "A1867T", "A1927G", "T1999C", "T2053A", "G2111A", "A2224G", "A2241G", "A2380G", "T2393C", "A2459G", "A2625G", "C2638T", "T2653C", "A2727G", "A2763G", "G2837A", "A2919G", "C2927A", "A2929C", "T2975C", "G3058A", "A3202G", "T3225A", "G3250A", "T3276A", "A3443T", "G3477A", "G3643A", "A3727G", "T3757C", "C3826T", "C3857T", "T4039A", "A4063C", "C4110T", "C4123T", "A4225G", "G4252A", "G4262A", "G4263A", "G4267A", "T4701C", "T4703G", "A4736G", "G4865A", "G4971A", "A5007C", "C5019T", "T5027C", "C5062T", "G5131A", "A5173G", "T5239C", "G5290A", "A5293G", "T5357G", "G5370A", "T5384C", "A5433C", "C5444A", "A5491G", "A5560G", "G5561A", "G5581A", "A5587G", "A5632T", "A5634C", "G5635A", "A5644G", "T5645C", "C5678T", "G5717A", "A5718G", "T5827C", "A5845G", "T5857C", "A5867G", "T5944C", "A6022G", "G6028A", "A6029C", "A6030C", "A6066G", "C6145T", "T6163-", "A6164-", "C6165-", "T6166-", "T6169-", "A6176-", "C6177-", "C6178-", "T6184C", "A6194G", "-6195G", "A6200C", "C6202A", "G6204A", "C6207G", "C6209A", "T6210C", "G6211C", "A6212C", "-6213T", "G6215A", "A6217G", "C6278A", "A6335G", "T6373C", "T6457G", "A6461G", "A6463G", "G6490A", "A6571G", "G6572A", "C6666T", "A6679G", "-6688T", "-6693G", "-6703A", "G6714A", "A6836G", "A6839G", "A6840C", "A6841G", "A6842G", "G6936C", "-6947G", "-6948A", "-6949C", "-6986A", "-6987A", "-6990A", "-6992A", "-6994A", "-6998T", "-6999C", "C7025A", "G7026A", "A7094G", "A7107G", "T7108A", "A7149T", "A7160C", "-7162G", "-7163C", "A7268G", "G7295A", "T7308C", "G7316A", "G7317C", "A7322T", "G7366A", "G7369C", "A7375G", "C7407T", "T7408G", "G7410C", "G7415T", "A7420G", "A7422G", "G7423C", "C7424G", "A7425G", "G7442A", "T7604A", "C7605A", "T7622A", "C7623A", "T7624C", "C7625T", "T7627C", "G7628A", "A7629G", "G7630T", "C7645A", "A7714G", "G7722T", "A7732G", "T7748C", "G7753A", "G7769A", "G7790A", "C7801T", "C7825T", "A7929G", "C7943G", "G7944A", "G7985A", "A7986C", "G8001C", "G8009A", "G8117A", "G8121A", "G8144A", "C8145T", "T8164C", "A8172T", "A8188G", "C8189A", "G8208A", "A8224G", "T8321A", "A8364C", "A8399G", "G8458A", "A8459G", "G8462A", "C8543T", "C8590G", "T8595G", "A8660G", "C8676T", "A8812G", "A8816G", "G8846A", "G8848A", "A8852G", "G8885A", "G8955A", "C8960A", "T8966C", "G8997A", "G9008A", "G9013C", "T9014C", "G9022C", "G9026A", "G9035A", "G9038C", "G9040A", "G9042C", "G9049A"], "INT": ["E96D", "T112I", "G163K"], "RT-p51": ["D6N", "K49R", "K122E", "D177G", "K211R", "K223R", "D248N", "K275R", "Q278N", "S294P", "L377Q", "L394Q"], "RT-p66": ["D6N", "K49R", "K122E", "D177G", "K211R", "K223R", "D248N", "K275R", "Q278N", "S294P", "L377Q", "L394Q", "T450S", "R461K"], "gp120": ["N5D", "K59P", "N71S", "L142M", "S159I", "K203E", "E240K", "P271L", "-280R", "R287Q", "E315G", "-328A", "K329A", "T330-", "R361T", "-378N", "-379D", "-380T", "-381V", "-382S", "-383N", "I387T", "R391K", "N414E", "N418R", "N432R", "N434T", "N435D", "N436Q", "T437P", "K472E", "E481K"], "gp41": ["V2A", "G5T", "M7L", "I24M", "S101N", "S107N", "H108Y", "D109S", "N114K", "N140I", "A156T", "D163N", "H209R", "R214E", "E228T", "R233T", "D272N", "R273K", "A281I", "Q290L", "L296I", "S302N", "A340T"], "nef": ["S8R", "R39K", "A83G", "L85V", "N157S", "M168I", "S169N", "D205N", "C206*"], "p17": ["M31L", "I35V", "D47N", "R76K", "K91R", "Q112K", "Q113S"], "p2": ["T10-"], "p24": ["S225G"], "p6": ["T22N", "-26K", "K27Q", "Q28E", "E29Q", "Q30K", "K31E", "D32E", "E33G", "G34H", "L35N", "Y36P", "W50*"], "p7": ["I12S", "V13I", "I24L", "R29K"], "pro": ["K14R"], "rev": ["T32R", "R46N", "Q51H", "G54E", "G90E", "S99N", "S106P", "T114D"], "tat": ["L3P", "T23N", "T39A", "S62D", "V69I", "K71E", "I74V", "H78Q", "G79R"], "vif": ["F39L", "V129I", "K141Q", "T159I", "G182D"], "vpr": ["I63M", "I84M", "V89I"], "vpu": ["I9F", "A10T", "I13A", "T24I", "R37K", "F74L", "N80D"]}, "labels": {"aa": "INT: E96D, T112I, G163K; RT-p51: D6N, K49R, K122E, D177G, K211R, K223R, D248N, K275R, Q278N, S294P, L377Q, L394Q; RT-p66: D6N, K49R, K122E, D177G, K211R, K223R, D248N, K275R, Q278N, S294P, L377Q, L394Q, T450S, R461K; gp120: N5D, K59P, N71S, L142M, S159I, K203E, E240K, P271L, -280R, R287Q, E315G, -328A, K329A, T330-, R361T, -378N, -379D, -380T, -381V, -382S, -383N, I387T, R391K, N414E, N418R, N432R, N434T, N435D, N436Q, T437P, K472E, E481K; gp41: V2A, G5T, M7L, I24M, S101N, S107N, H108Y, D109S, N114K, N140I, A156T, D163N, H209R, R214E, E228T, R233T, D272N, R273K, A281I, Q290L, L296I, S302N, A340T; nef: S8R, R39K, A83G, L85V, N157S, M168I, S169N, D205N, C206*; p17: M31L, I35V, D47N, R76K, K91R, Q112K, Q113S; p2: T10-; p24: S225G; p6: T22N, -26K, K27Q, Q28E, E29Q, Q30K, K31E, D32E, E33G, G34H, L35N, Y36P, W50*; p7: I12S, V13I, I24L, R29K; pro: K14R; rev: T32R, R46N, Q51H, G54E, G90E, S99N, S106P, T114D; tat: L3P, T23N, T39A, S62D, V69I, K71E, I74V, H78Q, G79R; vif: F39L, V129I, K141Q, T159I, G182D; vpr: I63M, I84M, V89I; vpu: I9F, A10T, I13A, T24I, R37K, F74L, N80D"}}}]}]}]}]}]}, {"name": "NODE_0000088", "node_attrs": {"div": 0.07991000000000001, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G404A", "C471G", "T495G", "G1328A", "C1444T", "T1514C", "C1724T", "G2023A", "G2038A", "A2063C", "A2098C", "G2131A", "G2155A", "G2498A", "C2500A", "A2518G", "A2548G", "T2579A", "C2605T", "C2613A", "A2615C", "C2638T", "G2665A", "G2707A", "T2708C", "A2710G", "G2714C", "A2722G", "C2723T", "A2728G", "T2740C", "G2788T", "C2828G", "A2829T", "T2831C", "C2839A", "T2863C", "A2878G", "C2885T", "A2887G", "T2908C", "A2937G", "G2951A", "C2968A", "A2969G", "G2974A", "G2980A", "T2983A", "G2984A", "C2985A", "T2996C", "T3002C", "G3010A", "A3046G", "A3091G", "G3100C", "G3154A", "T3170G", "C3171G", "A3205G", "G3217A", "G3221A", "T3223C", "T3225C", "A3535C", "A4130C", "G4971A", "C5492T", "G5839A", "A5956T", "A5958C", "T5980C", "-6203A", "-6205C", "A6333G", "G6451A", "G6481A", "C6673T", "A6840C", "G7269A", "A7276G", "A7289C", "T7322G", "G7366A", "A7426G", "A7428G", "C7690A", "T7929A", "A8129C", "C8169T", "T8486C", "T8974G", "G9025T"], "INT": ["S119P"], "RT-p51": ["V135I", "C162S", "A173K", "K174Q", "E207Q", "Q245V", "D248E", "K281R", "D291E", "I292V", "A297K", "S359G", "A376T"], "RT-p66": ["V135I", "C162S", "T173K", "K174Q", "E207Q", "Q245V", "D248E", "K281R", "A286T", "D291E", "I292V", "A297K", "S359G", "A376T", "L377T", "Q480H"], "gp120": ["E34D", "K35T", "V56I", "K479Q"], "gp41": ["L54M", "N129E"], "p17": ["L46V", "S54A"], "p2": ["A7V", "I13-"], "p24": ["G183N", "S225G"], "pro": ["M89L"], "vpu": ["D78N"]}, "labels": {"aa": "INT: S119P; RT-p51: V135I, C162S, A173K, K174Q, E207Q, Q245V, D248E, K281R, D291E, I292V, A297K, S359G, A376T; RT-p66: V135I, C162S, T173K, K174Q, E207Q, Q245V, D248E, K281R, A286T, D291E, I292V, A297K, S359G, A376T, L377T, Q480H; gp120: E34D, K35T, V56I, K479Q; gp41: L54M, N129E; p17: L46V, S54A; p2: A7V, I13-; p24: G183N, S225G; pro: M89L; vpu: D78N"}}, "children": [{"name": "results/subtype_trees/CRF44_BF1.nwk", "node_attrs": {"div": 0.10101000000000002, "clade_membership": {"value": "CRF44_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A133G", "A224G", "-280G", "G317A", "G395A", "G401A", "A431G", "G438A", "G524A", "A569G", "A692C", "G869A", "C1077G", "A1078G", "T1335C", "A1418G", "A1586G", "C1670A", "G1691A", "G1709A", "C1782A", "T1783A", "C1833A", "T2101C", "C2199T", "A2206C", "A2215G", "A2224G", "A2230G", "A2368G", "C2452A", "G2461A", "T2464A", "G2539C", "T2737A", "A2923G", "C2939T", "C2941A", "C2960T", "A2985G", "C2996A", "C3067T", "G3094A", "T3172G", "C3223A", "A3449C", "C3496T", "T3545C", "G3787A", "A3808C", "A3825G", "G3884A", "G4176A", "T4247C", "C4258T", "T4388G", "T4706C", "G4871A", "T4914C", "C4965T", "A4993C", "T5027C", "C5034T", "A5046G", "G5069A", "T5228C", "C5237T", "A5448C", "A5493G", "A5548C", "G5629A", "C5663T", "T5920C", "T6024A", "G6050A", "A6186C", "A6194-", "T6196-", "A6197-", "A6200-", "C6202-", "-6213A", "C6287A", "-6340A", "T6457A", "G6575A", "T6577G", "-6688T", "-6689A", "-6691A", "-6692C", "-6693C", "T6760C", "C6766T", "G6773A", "G6808A", "T6826C", "T7099A", "G7152A", "A7155C", "-7162T", "T7180A", "G7322A", "C7429A", "A7621G", "A7688G", "G7868A", "G7938A", "G8130A", "C8265T", "G8436A", "C8437A", "A8531C", "G8666C", "C8699T", "A8887T", "G9008A"], "INT": ["E11D", "N17S", "V37I", "G134D", "G163R", "S205A"], "RT-p51": ["T35V", "D123E", "F214L", "A286P", "K297R", "L301I"], "RT-p66": ["T35V", "D123E", "F214L", "K297R", "L301I", "K452Q"], "gp120": ["V57N", "D66N", "E122-", "H145N", "N160S", "N201K", "D241K", "-280P", "G307R", "K320E", "T416S", "N433T"], "gp41": ["N42K", "D113G", "A189T", "S212N", "R276K", "R277G", "A321V"], "nef": ["A32K", "E63D", "K182M", "R188S"], "p17": ["V35I"], "p24": ["Q116G"], "p6": ["L35Y", "Q52K"], "pro": ["T12K"], "rev": ["E10A", "E11D", "E95G"], "tat": ["K24N", "T39M", "T58P", "A77T"], "vif": ["E61K", "Y110H", "H127Y", "Q136P", "I154V"], "vpr": ["H45Y"], "vpu": ["A8S", "A19V", "N80D"]}, "labels": {"aa": "INT: E11D, N17S, V37I, G134D, G163R, S205A; RT-p51: T35V, D123E, F214L, A286P, K297R, L301I; RT-p66: T35V, D123E, F214L, K297R, L301I, K452Q; gp120: V57N, D66N, E122-, H145N, N160S, N201K, D241K, -280P, G307R, K320E, T416S, N433T; gp41: N42K, D113G, A189T, S212N, R276K, R277G, A321V; nef: A32K, E63D, K182M, R188S; p17: V35I; p24: Q116G; p6: L35Y, Q52K; pro: T12K; rev: E10A, E11D, E95G; tat: K24N, T39M, T58P, A77T; vif: E61K, Y110H, H127Y, Q136P, I154V; vpr: H45Y; vpu: A8S, A19V, N80D", "clade": "CRF44_BF1"}}, "children": [{"name": "MH078557", "node_attrs": {"div": 0.1371, "accession": "MH078557", "clade_membership": {"value": "CRF44_BF1"}, "country": {"value": "PE"}, "date": {"value": 2016.0}, "Strain_name": {"value": "DEURF16PE007"}, "LANL_subtype": {"value": "CRF44_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200G", "T201C", "A242G", "A256-", "-304T", "A388G", "A440G", "G455A", "T476C", "T479C", "A494G", "C507A", "G508A", "A512G", "G520C", "C525T", "G562A", "A571T", "G579A", "A605G", "A607G", "G609A", "G614T", "A632T", "T636C", "G641C", "C669A", "T695C", "A697C", "C698T", "A699G", "G702-", "G703-", "-711A", "-712A", "-713G", "-714G", "-715G", "T718C", "C774A", "T777A", "G806A", "T808C", "G809A", "G810A", "A820G", "G837A", "T861G", "C890T", "A891C", "C892T", "C950A", "T978A", "A1002G", "T1003C", "A1007G", "T1046G", "G1192A", "T1253C", "A1271G", "G1278A", "G1279A", "T1296C", "G1301A", "A1339G", "G1355A", "G1380T", "A1449C", "A1452G", "C1456A", "G1461A", "G1472A", "A1486G", "T1501C", "A1532G", "C1541T", "G1588A", "T1646C", "A1656C", "A1673G", "C1692A", "A1700G", "T1741C", "T1752C", "C1761A", "A1762C", "A1772G", "C1775A", "A1781G", "C1787T", "A1793G", "G1794A", "A1804G", "C1825A", "C1826G", "A1832G", "A1834G", "A1839G", "A1857G", "C1865T", "A1907G", "A1968G", "T2013C", "T2017A", "G2074A", "T2080A", "C2083T", "A2198G", "A2203G", "C2281T", "T2365G", "G2407A", "C2420T", "C2575T", "T2653C", "C2671T", "A2693T", "A2699G", "A2755G", "C2776T", "C2863T", "G2869A", "G2914A", "A2951C", "G2995A", "G3016A", "G3046A", "T3049C", "C3055T", "A3071G", "G3142A", "T3165C", "G3166A", "A3192G", "A3196G", "A3217G", "G3250A", "A3268G", "C3275T", "T3328C", "T3349C", "G3401A", "A3454G", "G3477A", "C3492T", "T3497A", "C3499T", "G3520A", "T3602A", "A3629G", "A3630T", "G3631A", "T3644A", "C3649T", "G3718A", "G3802A", "G3896A", "A3931G", "T3967C", "A3988G", "G3989A", "C4072T", "G4084A", "A4114C", "C4129T", "T4191A", "T4198C", "T4234C", "G4255A", "A4391T", "C4396T", "C4674T", "A4694G", "T4701A", "T4703G", "C4715T", "G4737A", "C4761T", "G4767A", "C4771A", "A4774C", "A4781G", "G4864A", "G4865A", "A4878G", "G4888A", "A4952T", "A4970C", "A5008G", "A5024G", "G5049C", "T5051C", "A5112G", "G5121A", "G5143A", "A5186C", "A5200G", "G5212A", "A5223T", "A5246G", "T5292C", "C5333T", "A5335G", "T5336C", "T5356C", "G5382A", "T5384C", "A5396G", "A5447G", "C5579T", "A5601T", "T5611A", "C5612T", "G5614A", "G5619A", "T5620A", "A5626G", "C5631T", "A5632G", "G5668A", "T5684C", "C5704G", "A5720G", "G5747T", "G5781T", "C5834T", "-5861G", "-5862C", "-5863A", "A5866C", "C5869T", "A5907G", "C5916A", "C5917G", "T5956A", "C5958A", "A5959G", "G5962A", "T5964C", "C6007T", "G6023A", "G6029A", "A6030C", "G6035A", "A6065G", "C6110G", "G6121A", "T6160C", "-6167G", "-6168A", "-6170G", "-6171C", "-6172C", "-6173A", "-6174A", "-6175C", "A6177G", "G6179A", "-6180A", "C6181T", "T6184C", "A6188G", "A6203G", "G6204A", "C6207A", "C6208A", "G6220T", "C6222A", "C6228T", "C6233A", "T6242A", "T6244C", "A6261T", "A6272G", "C6278A", "T6279A", "G6303A", "T6310C", "C6318A", "C6322T", "A6323G", "A6324G", "T6325C", "A6330C", "T6331A", "G6336A", "G6339C", "G6425A", "G6442A", "A6462C", "A6464G", "G6547A", "C6563T", "A6573G", "G6577A", "T6592A", "A6599C", "C6667T", "C6670T", "T6676C", "A6695G", "A6723T", "C6745T", "C6748T", "A6788G", "A6790C", "T6794A", "G6797A", "A6800-", "G6801-", "G6802-", "G6803-", "T6804-", "A6805-", "A6806-", "A6807-", "A6808-", "C6810-", "A6811-", "A6813G", "T6815G", "G6820A", "C6822A", "T6823A", "T6824G", "C6826A", "C6829T", "-6830C", "-6831T", "-6832C", "-6833T", "-6834T", "C6840A", "A6848C", "A6854G", "T6857C", "C6858A", "T6860C", "G6935C", "G6936A", "A6937G", "-6947G", "-6948A", "-6949A", "-6950A", "-6951C", "-6952A", "-6953G", "-6954A", "-6955A", "-6956T", "-6957T", "-6958C", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964C", "-6965A", "-6966C", "-6997A", "-6998A", "-6999G", "-7000C", "-7002A", "A7005G", "T7015G", "G7054A", "G7076A", "A7093G", "C7096T", "C7101G", "A7129C", "T7147G", "T7150A", "A7158G", "A7160G", "A7190G", "A7197G", "G7212A", "G7256A", "C7264A", "A7275G", "A7281G", "G7310A", "G7311C", "A7315G", "A7376G", "T7386C", "G7428A", "A7429G", "T7433C", "G7459A", "G7513T", "G7519A", "A7532C", "C7597T", "G7630C", "A7641G", "T7642G", "A7668G", "C7684T", "G7691A", "A7692C", "G7701A", "A7710G", "A7722G", "A7747C", "C7755A", "G7760A", "A7763C", "A7782G", "T7796A", "C7801G", "C7805A", "A7818G", "C7852A", "A7885T", "A7921G", "G8006A", "G8008A", "C8009A", "A8018G", "A8029G", "G8030A", "C8031G", "A8051C", "A8079T", "G8117A", "G8131A", "A8132G", "C8167T", "C8171A", "A8172G", "C8213T", "T8218C", "G8255A", "T8266G", "G8288A", "C8320A", "T8321G", "T8322C", "A8323G", "G8330C", "C8331T", "T8348G", "G8349A", "G8356T", "A8367T", "T8375A", "G8385T", "A8388G", "G8407A", "C8412T", "C8422A", "A8425-", "A8426-", "G8427-", "A8435G", "A8437G", "A8455G", "A8459C", "C8460A", "G8462A", "G8476A", "A8489T", "G8507A", "A8597C", "A8604G", "C8607T", "A8608T", "A8636T", "C8687T", "G8717A", "A8739G", "A8746T", "C8768T", "G8795T", "A8797T", "G8798A", "A8805G", "G8814A", "G8822A", "C8825T", "T8864C", "G8868C", "A8869C", "A8874G", "C8904T", "G8905C", "A8912G", "T8914G", "G8935A", "G8942T", "C8952A", "A8967C", "C8978A", "A8980G", "A9008-", "-9009A", "T9025G", "T9029A", "G9030A", "A9042-", "T9109A"], "INT": ["D41N", "V72I", "F139Y", "T206S"], "RT-p51": ["T200S", "I202V", "I326V", "M357T", "K366R", "G436R"], "RT-p66": ["T200S", "I202V", "T286P", "I326V", "M357T", "K366R", "G436R", "R461K", "A466V", "S468T", "L503I", "K512V", "L517I"], "gp120": ["-3A", "E4D", "K18R", "T21K", "D34E", "T35K", "V37A", "E59T", "V61I", "N71D", "Q86E", "N105D", "-106L", "-107K", "N108E", "-109D", "-110Q", "A125V", "Q127K", "S130T", "E136V", "K140E", "L142K", "R150K", "P155Q", "N157G", "N159T", "S162T", "A191T", "K203T", "K204E", "E240G", "I249L", "I281V", "Y290F", "K312D", "L314I", "E315K", "-319E", "H324L", "N327-", "-328N", "-329K", "K332Q", "N334D", "S335Q", "S336P", "G361Q", "D365E", "-367E", "-368F", "-369N", "-370S", "-371T", "-377S", "-378N", "-379G", "-380T", "T385-", "A408T", "N434S", "N435G", "N446D", "K448R", "S453N", "V468I", "K474R", "Q476R"], "gp41": ["G3T", "T25A", "V28A", "M54L", "K77Q", "I84L", "K122R", "E130T", "R133K", "E136G", "N140S", "E148D", "A151E", "D153N", "K154Q", "N160S", "S165T", "N166K", "L168M", "K172R", "V235I", "N239D", "A243S", "H259L", "D272N", "K276Q", "Q290R", "L304F", "V318I", "V329I", "L340A", "A343L"], "nef": ["G3S", "W5L", "S9C", "A15S", "I16V", "R22Q", "P24S", "A27E", "E28G", "G29-", "K32R", "E38G", "R39S", "S45N", "R49S", "V85F", "S88G", "H89F", "E98D", "E108D", "I133V", "Y135F", "E151D", "E152V", "K155E", "E158K", "E176P", "R178G", "L191R", "R198K", "Q204K"], "p1": ["N9H"], "p17": ["K18R", "I35M", "R58K", "G62A", "R76K", "Y79F", "V82I", "K91R", "V92I", "E93D", "E99D", "Q112K", "D121A", "K122E", "G123K", "-124G", "-125A", "V128-"], "p2": ["N9H", "T10-", "V12N", "-13I"], "p24": ["L15I", "S16T", "V26A", "V27I", "K30R", "V36I", "S44A", "T54L", "L83I", "I91A", "R154K", "K203R", "A217S"], "p6": ["P5T", "I21T", "S24P", "-26K", "K27T", "Q28E", "E29Q", "Q30K", "K31E", "D32E", "E33G", "G34K", "Y36P", "A39T", "K42R", "P49Q", "K52R"], "p7": ["K7R", "I12T", "R41K"], "pro": ["L10V", "K12E", "K14R", "K20R", "N37D", "K57R", "I72T"], "rev": ["R53H", "A54K", "E57G", "S61E", "E68A", "G90E", "T93A", "E94A", "G95R", "P107S", "A108E"], "tat": ["L3P", "N7S", "N24S", "P68L"], "vif": ["H30Y", "F39M", "V51I", "A62D", "K63T", "R93K", "I98V", "G101D", "K122N", "K128N", "K141R", "A155P", "K176E", "E179K", "S186N"], "vpr": ["Q3R", "N28H", "H40L", "S41G", "N48D", "I63T", "H77R", "I84T", "A93T"], "vpu": ["S2I", "D3N", "L5I", "I7V", "I9V", "V21I", "V26A", "L33V", "K38R", "R47I", "E58D", "D60E", "A61L", "E62A", "E63A", "A65G", "A66E", "L67M", "E70-", "M71-", "G72-", "P73-", "F74-", "I75-", "P76-", "G77-", "N78-", "I79-", "D80-", "N81-"]}, "labels": {"aa": "INT: D41N, V72I, F139Y, T206S; RT-p51: T200S, I202V, I326V, M357T, K366R, G436R; RT-p66: T200S, I202V, T286P, I326V, M357T, K366R, G436R, R461K, A466V, S468T, L503I, K512V, L517I; gp120: -3A, E4D, K18R, T21K, D34E, T35K, V37A, E59T, V61I, N71D, Q86E, N105D, -106L, -107K, N108E, -109D, -110Q, A125V, Q127K, S130T, E136V, K140E, L142K, R150K, P155Q, N157G, N159T, S162T, A191T, K203T, K204E, E240G, I249L, I281V, Y290F, K312D, L314I, E315K, -319E, H324L, N327-, -328N, -329K, K332Q, N334D, S335Q, S336P, G361Q, D365E, -367E, -368F, -369N, -370S, -371T, -377S, -378N, -379G, -380T, T385-, A408T, N434S, N435G, N446D, K448R, S453N, V468I, K474R, Q476R; gp41: G3T, T25A, V28A, M54L, K77Q, I84L, K122R, E130T, R133K, E136G, N140S, E148D, A151E, D153N, K154Q, N160S, S165T, N166K, L168M, K172R, V235I, N239D, A243S, H259L, D272N, K276Q, Q290R, L304F, V318I, V329I, L340A, A343L; nef: G3S, W5L, S9C, A15S, I16V, R22Q, P24S, A27E, E28G, G29-, K32R, E38G, R39S, S45N, R49S, V85F, S88G, H89F, E98D, E108D, I133V, Y135F, E151D, E152V, K155E, E158K, E176P, R178G, L191R, R198K, Q204K; p1: N9H; p17: K18R, I35M, R58K, G62A, R76K, Y79F, V82I, K91R, V92I, E93D, E99D, Q112K, D121A, K122E, G123K, -124G, -125A, V128-; p2: N9H, T10-, V12N, -13I; p24: L15I, S16T, V26A, V27I, K30R, V36I, S44A, T54L, L83I, I91A, R154K, K203R, A217S; p6: P5T, I21T, S24P, -26K, K27T, Q28E, E29Q, Q30K, K31E, D32E, E33G, G34K, Y36P, A39T, K42R, P49Q, K52R; p7: K7R, I12T, R41K; pro: L10V, K12E, K14R, K20R, N37D, K57R, I72T; rev: R53H, A54K, E57G, S61E, E68A, G90E, T93A, E94A, G95R, P107S, A108E; tat: L3P, N7S, N24S, P68L; vif: H30Y, F39M, V51I, A62D, K63T, R93K, I98V, G101D, K122N, K128N, K141R, A155P, K176E, E179K, S186N; vpr: Q3R, N28H, H40L, S41G, N48D, I63T, H77R, I84T, A93T; vpu: S2I, D3N, L5I, I7V, I9V, V21I, V26A, L33V, K38R, R47I, E58D, D60E, A61L, E62A, E63A, A65G, A66E, L67M, E70-, M71-, G72-, P73-, F74-, I75-, P76-, G77-, N78-, I79-, D80-, N81-"}}}, {"name": "CRF44_BF1_NODE_0000001", "node_attrs": {"div": 0.11295000000000002, "clade_membership": {"value": "CRF44_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A866G", "A1562G", "C1598T", "A1979G", "T2302C", "C2527T", "A2623G", "C3023T", "A3162G", "C3266T", "A3642G", "A3674G", "A3770G", "G3866A", "G3869A", "G3952A", "T4585C", "A4956C", "G5167A", "A5187G", "T5451C", "A5560G", "A5845G", "C5869A", "C5974T", "T6169-", "-6180C", "A6185G", "T6187C", "G6214A", "C6375A", "A6489C", "G6490A", "G6611A", "G6714A", "A6812G", "G6821T", "-6979A", "-6981A", "-6984C", "-6987A", "-6988T", "-6993C", "C7096A", "A7100T", "A7152C", "A7158C", "G7168A", "G7440T", "C7463A", "G7657A", "A7947G", "G8243T", "G8335A", "T8595G", "C8606T", "T8759G", "C8904A"], "INT": ["V31I", "V32I"], "RT-p51": ["K356R"], "RT-p66": ["K356R", "E516G", "K527E", "I559V"], "gp120": ["N5K", "-112T", "N161S", "T174K", "K212T", "A253T", "R287Q", "-384D", "N414K"], "gp41": ["M4I", "K42R", "R46M", "D109E", "M118I", "E215G", "G314W"], "nef": ["F139L"], "pro": ["N61D"], "tat": ["S62G", "N80D"], "vif": ["I124L"], "vpr": ["N28S"]}, "labels": {"aa": "INT: V31I, V32I; RT-p51: K356R; RT-p66: K356R, E516G, K527E, I559V; gp120: N5K, -112T, N161S, T174K, K212T, A253T, R287Q, -384D, N414K; gp41: M4I, K42R, R46M, D109E, M118I, E215G, G314W; nef: F139L; pro: N61D; tat: S62G, N80D; vif: I124L; vpr: N28S"}}, "children": [{"name": "FJ358521", "node_attrs": {"div": 0.13710000000000003, "accession": "FJ358521", "clade_membership": {"value": "CRF44_BF1"}, "country": {"value": "CL"}, "date": {"value": 2000.0}, "Strain_name": {"value": "CH80"}, "LANL_subtype": {"value": "CRF44_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C281-", "A303T", "-304T", "G354A", "G495C", "C583T", "A607G", "C626A", "A678G", "G689T", "C767T", "A785G", "T852A", "A914C", "T978G", "A1002G", "T1003C", "G1173A", "T1174C", "G1278A", "G1279A", "A1339G", "T1421G", "C1439T", "A1455G", "A1543G", "G1588A", "T1681C", "C1693T", "-1746C", "-1747C", "-1748T", "C1749-", "C1750-", "C1751-", "A1772G", "A1793T", "C1853A", "G1858A", "T1910C", "A1920G", "A1926C", "G1976A", "C1985A", "T1986C", "A2178G", "C2206T", "T2499C", "A2519G", "A2641G", "T2653C", "C2671T", "A2951C", "C2953T", "T3067G", "G3098T", "G3188A", "A3382G", "C3444G", "C3449A", "A3450G", "A3463G", "T3469C", "T3551C", "T3566C", "A3684G", "G3901A", "C3995A", "G3997A", "A4076C", "T4198C", "G4252A", "A4273G", "A4354G", "A4664G", 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G335C, V365I; RT-p66: E28G, V35I, I135T, I142V, T286P, D324E, G335C, V365I, T450S, Q452R, S491P, K530R; gp120: -3T, N57D, E59P, I80V, I81V, N102E, N105-, -109A, -110T, -111A, -113N, -114H, -115S, -116D, -117A, -118T, -119A, -120A, -121S, -122E, -123P, K140R, Q141R, N157S, S162R, K203T, S250T, P280H, R307K, Q309E, -319A, -326P, -328A, N334E, I343V, D365-, T366-, K414R, N432K, N434D, T437-, I439T, V468I, Q479T, K482R; gp41: G3T, K122R, E148D, D163S, S165T, K172R, H209P, H259L, I266T, S293G, E313G, N331H, L340F; nef: A15D, R49S, L55V, Y81F, Y102H, K104Q, E108D, N162T, C163G, E176A, R178K, H199F, C206D; p17: V7I, A54P, A83V, K91R, D102E, T115A; p24: S41T, L83V, I91A, V148T, K203R; p6: L1P, P5L, Y35K, L38P, A39F; p7: K26R, R41K; pro: L19I, K41R, K43T, D60N, L63T; rev: A10V, A15V, V16I, I55L, P67L, E111G; tat: V4I, N24R, M39V, G62D, I74L; vif: F39L, K61D, V85A, S116T, E117D, I129V, K167Q, R181K, G185E; vpr: E6G, S94N; vpu: S2T, L16A, T24I, K31R, M71V"}}}, {"name": "AY536235", "node_attrs": 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"K12Q", "N37E", "D60E"], "rev": ["Y18H", "S61L", "H82N", "T93A"], "tat": ["L3P", "Y26F", "I64T", "P68L", "V69I", "P81S"], "vif": ["K33R", "R37G", "E60D", "K63E", "R95S", "I98L", "I109T", "K141E", "G143S", "E179K"], "vpr": ["S41D", "I63T"], "vpu": ["I9L"]}, "labels": {"aa": "INT: M50I, P90S, K240R, G283S; RT-p51: R281K, P286T, E291A, K311R; RT-p66: R281K, E291A, K311R, A466V, S468P, V548I; gp120: -106L, -107K, N108E, -109E, -110P, -111E, G124-, A125-, S130T, N132K, M133V, R138K, N157D, N158G, N159K, S160D, Y163G, R164K, K204E, I281L, K300Q, L314I, K318R, -319K, K322G, H324Y, -326S, -328E, -329T, T330I, S335P, M345T, Y356F, S360T, G361R, -367G, -368F, -369N, -370D, -371T, -372K, -373S, -374N, -375D, -376T, E401Q, N418R, N435T, N436T, I463L; gp41: I84L, G113N, E119Q, E136G, E143D, Q147K, A151E, D153S, N160T, P216L, R231K, L242F, A243S, F263L, A267V, L285P, S302N, N305D, V321G, V329I, L345Q; nef: I16V, R22Q, S46N, K105R, Q107R, I133T, Y135F, D174E, E176D, S188T, R196K; p1: K4R; p17: V46I, G62E, Q65H, Q69R, V92E, E93G; p2: A11N; p24: R162K, N183G, H226Y; p6: -26K, Q28E, E29Q, Q30K, K31D, D32E, E33G, G34K, Y36P, P49Q; p7: K3R; pro: L10V, K12Q, N37E, D60E; rev: Y18H, S61L, H82N, T93A; tat: L3P, Y26F, I64T, P68L, V69I, P81S; vif: K33R, R37G, E60D, K63E, R95S, I98L, I109T, K141E, G143S, E179K; vpr: S41D, I63T; vpu: I9L"}}}]}]}, {"name": "NODE_0000091", "node_attrs": {"div": 0.08531000000000001, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A261G", "A426T", "G428A", "C435A", "G474A", "T485A", "C486T", "A2075C", "T2581C", "A2727G", "A2830G", "G2972A", "T3013C", "G3043A", "A3088G", "G3402A", "A4664G", "G5225A", "A5626T", "G5706A", "C5825-", "T5826-", "A6329G", "T6690-", "-6991C", "T7165A", "C7250T", "C7280A", "A7281G", "A7315G", "A7549G", "C7553A", "C7561T", "A7590C", "C7597T", "C7603T", "T7604A", "G8131C", "C8156T", "T8157G", "G8159T", "A8323C", "A8409G", "C8412G", "T8585C", "C8590G", "A8656G", "A9041C", "T9068C"], "RT-p51": ["K211R", 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"p24": ["V27I"], "pro": ["I72T"], "rev": ["S99N", "V109I"], "tat": ["L3I"], "vif": ["H48N", "E60K", "K122N", "K128R"], "vpr": ["A93N"], "vpu": ["A8G", "K38R", "P73L", "F74V"]}, "labels": {"aa": "INT: G163Q; RT-p51: T35M, R390K, D399E; RT-p66: T35M, R390K, D399E, Q483L; gp120: -106A, -107K, -110T, -112T, -116S, -117S, K212T, T308E, G361K, N433K, V468I; gp41: G5A, Q108Y, N166K, K199Q, R231K, D272N, R276N, A281I; nef: P24E; p17: R76K; p24: V27I; pro: I72T; rev: S99N, V109I; tat: L3I; vif: H48N, E60K, K122N, K128R; vpr: A93N; vpu: A8G, K38R, P73L, F74V", "clade": "CRF38_BF1"}}, "children": [{"name": "CRF38_BF1_NODE_0000001", "node_attrs": {"div": 0.10038000000000001, "clade_membership": {"value": "CRF38_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A399C", "G869A", "T875C", "T1262C", "G1477A", "G1503A", "A1536C", "A1592G", "A2459G", "A2629G", "G2710A", "A2951G", "C3252T", "A3676T", "A4107G", "A4262C", "T4412C", "G4549A", "G4673A", "A4695G", "A4971G", "A5186C", "G5269A", "C5306A", 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K204T, M345T; gp41: P213S, A321V, A325I; nef: E108D, R198K; p7: S4N, V13I, I24L; rev: V16A, R17Q, P31L, A54E, E68A; tat: Q63P; vif: M29I, R37G, I129V; vpr: N28H, I84T"}}, "children": [{"name": "FJ213780", "node_attrs": {"div": 0.13920000000000002, "accession": "FJ213780", "clade_membership": {"value": "CRF38_BF1"}, "country": {"value": "UY"}, "date": {"value": 2005.0}, "Strain_name": {"value": "UY05_4752"}, "LANL_subtype": {"value": "CRF38_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A152C", "A263G", "G354A", "G361C", "A374G", "G407A", "A425G", "C434T", "A435C", "T467C", "A474G", "T476C", "G495C", "C507A", "A512G", "G520T", "G579A", "C583T", "A604G", "C645T", "C662T", "A697G", "C698A", "A699C", "A701G", "T734C", "G771T", "C774A", "A866G", "A932G", "G956A", "T978A", "T992G", "A998G", "T1013C", "G1019A", "C1060A", "A1242G", "G1313A", "T1335C", "C1342G", "C1350A", "C1351T", "T1358C", "A1442G", "A1452C", "C1456T", "T1501G", "C1535T", "A1543G", "A1601G", "T1616A", "G1625A", "G1670A", "A1743G", "A1772G", "G1773A", "A1857T", "C1987T", "A1988G", "C2003T", "T2095C", "T2199C", "A2224G", "C2296T", "T2299C", "T2347C", "A2498G", "C2626A", "A2693G", "C2694A", "A2695C", "A2699G", "A2706G", "A2755G", "G2937A", "A2950G", "A3027G", "A3071G", "G3085A", "G3091A", "C3095A", "A3097T", "G3099A", "A3103G", "A3164G", "C3275T", "A3280G", "T3331C", "G3340A", "G3487A", "C3500T", "C3535A", "A3543T", "G3544A", "T3545A", "T3566C", "G3574A", "G3631A", "G3805T", "A3808G", "A3825G", "T3962A", "G3989A", "C3995A", "G3997A", "T4015C", "G4021A", "A4066T", "A4159G", "C4207T", "C4321T", "A4354G", "G4366A", "T4477C", "G4550A", "T4656C", "G4664A", "C4691T", "G4708A", "C4761T", "A4774C", "T4780C", "A4784C", "A4858T", "A4863G", "G4865C", "A4958T", "A4993C", "G5030A", "G5069A", "A5096G", "A5119C", "T5170C", "C5221T", "C5237T", "T5245C", "T5260C", "T5263A", "G5290A", "T5294C", "T5415C", "A5431G", "T5436G", "C5444A", "A5448T", "G5463A", "G5483A", "G5484C", "A5491G", "T5492A", "C5495A", "C5544A", "G5546A", "C5551T", "C5554T", "A5555C", "A5594G", "G5599T", "A5601G", "T5616A", "G5619A", "T5620A", "T5621A", "A5622C", "G5623T", "C5624T", "A5625G", "G5630C", "C5631A", "C5653T", "C5678T", "T5684C", "T5690A", "G5730C", "G5737C", "A5748T", "A5796C", "G5810A", "-5812C", "-5813T", "-5814T", "-5815G", "-5816T", "-5817T", "-5818A", "-5819T", "A5839G", "C5851A", "A5867G", "G5882A", "A5965G", "A6008G", "T6025C", "A6030G", "A6060G", "C6067A", "G6121A", "T6154C", "A6158C", "T6169C", "-6170C", "-6171T", "-6172T", "-6175G", "A6177G", "G6179C", "-6180A", "C6181G", "C6183A", "T6184C", "A6185G", "A6186G", "A6192G", "T6193C", "-6201G", "C6202T", "-6213A", "G6220T", "A6222T", "C6228T", "A6229C", "C6287T", "G6290T", "C6322T", "T6337A", "T6341A", "C6363G", "A6394G", "T6436A", "G6442A", "G6466A", "G6530A", "A6535G", "G6566T", "A6573G", "A6583G", "C6631T", "G6649T", "-6688T", "-6689A", "-6690T", "-6691A", "-6692C", "-6693A", "T6721C", "G6725A", "G6767A", "A6806-", "G6808A", "-6809A", "C6810G", "T6815G", "A6817T", "G6820A", "A6825T", "T6826A", "C6829T", "-6830C", "-6831C", "-6832C", "C6840A", "A6848C", "A6881G", "A6944G", "-6989A", "-6993T", "-6995G", "-6998A", "-6999A", "A7005G", "C7006A", "C7014T", "G7026A", "T7039A", "G7054A", "A7100G", "C7101T", "A7113C", "A7129C", "G7132A", "A7151G", "A7153T", "T7156C", "-7162G", "A7269G", "A7275G", "A7297T", "G7322A", "G7426A", "C7590A", "A7594C", "C7596G", "G7608C", "T7622A", "T7624C", "A7641G", "A7668G", "A7673G", "G7677A", "T7685A", "A7690T", "G7702A", "A7710G", "A7722T", "A7747C", "G7759T", "T7774C", "A7782G", "C7792T", "A7800G", "G7831A", "G7862A", "T7912C", "G7915A", "A7918G", "C7926T", "T7930C", "A7931G", "T7932C", "A8029G", "G8030A", "A8069C", "G8070T", "A8079T", "G8117A", "G8122A", "T8159G", "A8184G", "A8193G", "T8218C", "A8262G", "C8293T", "G8349A", "A8364C", "G8365C", "T8369A", "A8370G", "A8372G", "G8373-", "T8374-", "C8382T", "T8387G", "A8446G", "A8456G", "G8465A", "C8486T", "G8488A", "A8489T", "T8505G", "T8558C", "C8609T", "G8656A", "C8676T", "C8699G", "A8746T", "G8795T", "A8819G", "G8861A", "A8869C", "A8886C", "C8913T", "G8915T", "G8917C", "A8922G", "G8929A", "A8954G", "G8955A", "G9026A", "A9050C"], "INT": ["E10D", "N17S", "L63I", "V72I", "L74I", "V259I"], "RT-p51": ["M35T", "I135V", "D177E", "T200D", "I202V", "E204G", "R281K", "K311R", "I326V", "Q334N", "G335D", "M357V"], "RT-p66": ["M35T", "I135V", "D177E", "T200D", "I202V", "E204G", "R281K", "K311R", "I326V", "Q334N", "G335D", "M357V", "H480Q", "L484I", "S491P"], "gp120": ["N5D", "V10I", "N52D", "E59G", "K69R", "N102H", "A106L", "N108S", "-109Q", "T110N", "-111G", "-113S", "-114N", "-118T", "-119L", "-120K", "-121E", "E122D", "-123I", "A125V", "H145Y", "A146S", "N157S", "S162G", "T170S", "V226M", "A238S", "E240G", "D241E", "I243M", "Q265H", "-280H", "A291T", "V305I", "K318-", "N327-", "-329K", "K332Q", "I343V", "N364D", "D365-", "T366-", "-379N", "-380I", "-381E", "-382N", "-383N", "-384G", "T387I", "R391K", "T416V", "N420T", "N432H", "K433G", "N436K", "K472R", "K474R", "E481D"], "gp41": ["V7M", "N42S", "T96N", "P98R", "S102T", "S107T", "D109E", "D113G", "K122R", "I124V", "S125N", "S128T", "E129N", "E136G", "N140I", "E148D", "L152F", "N160S", "K166R", "M176I", "V187I", "T208I", "I210A", "A243T", "S256L", "H259L", "W286G", "Q294R", "K297R", "E320G", "L340F"], "nef": ["G3S", "S8P", "S9R", "I10V", "V11-", "P14S", "Q35R", "R49N", "L55V", "V85L", "R105K", "Y135F", "E151D", "M173I", "E176A", "K182Q", "L191F", "R192T", "I194V", "R196K", "D205N"], "p17": ["V7I", "S9T", "I34L", "N47D", "A54P", "G62V", "V82I", "A83V", "Q90R", "D121G", "K122Q"], "p2": ["T10P", "A11I"], "p24": ["A14S", "L15I", "L83I", "H87Q", "M96I", "T110N", "T171A", "A204G", "P207I"], "p6": ["T22A", "D32N"], "p7": ["I12S", "K26R"], "pro": ["K20M", "I64V", "H69Y", "I93L"], "rev": ["E11K", "K14Q", "Y28R", "S61D", "Q74P", "G90E", "G92R", "V104G"], "tat": ["T19A", "T23N", "K24N", "W36Y", "T39E", "T40K", "R57K", "P59S", "Q60S", "P73S", "I74T", "S75P"], "vif": ["F39C", "R41K", "K63T", "V65A", "Q91L", "R93G", "Q136P", "Q178P"], "vpr": ["H45Y", "L68M"], "vpu": ["D3E", "L5N", "A6L", "G8A", "T24I", "V26A", "I28K", "R41S", "E44Q", "R47S", "G72E", "N78D", "L82M"]}, "labels": {"aa": "INT: E10D, N17S, L63I, V72I, L74I, V259I; RT-p51: M35T, I135V, D177E, T200D, I202V, E204G, R281K, K311R, I326V, Q334N, G335D, M357V; RT-p66: M35T, I135V, D177E, T200D, I202V, E204G, R281K, K311R, I326V, Q334N, G335D, M357V, H480Q, L484I, S491P; gp120: N5D, V10I, N52D, E59G, K69R, N102H, A106L, N108S, -109Q, T110N, -111G, -113S, -114N, -118T, -119L, -120K, -121E, E122D, -123I, A125V, H145Y, A146S, N157S, S162G, T170S, V226M, A238S, E240G, D241E, I243M, Q265H, -280H, A291T, V305I, K318-, N327-, -329K, K332Q, I343V, N364D, D365-, T366-, -379N, -380I, -381E, -382N, -383N, -384G, T387I, R391K, T416V, N420T, N432H, K433G, N436K, K472R, K474R, E481D; gp41: V7M, N42S, T96N, P98R, S102T, S107T, D109E, D113G, K122R, I124V, S125N, S128T, E129N, E136G, N140I, E148D, L152F, N160S, K166R, M176I, V187I, T208I, I210A, A243T, S256L, H259L, W286G, Q294R, K297R, E320G, L340F; nef: G3S, S8P, S9R, I10V, V11-, P14S, Q35R, R49N, L55V, V85L, R105K, Y135F, E151D, M173I, E176A, K182Q, L191F, R192T, I194V, R196K, D205N; p17: V7I, S9T, I34L, N47D, A54P, G62V, V82I, A83V, Q90R, D121G, K122Q; p2: T10P, A11I; p24: A14S, L15I, L83I, H87Q, M96I, T110N, T171A, A204G, P207I; p6: T22A, D32N; p7: I12S, K26R; pro: K20M, I64V, H69Y, I93L; rev: E11K, K14Q, Y28R, S61D, Q74P, G90E, G92R, V104G; tat: T19A, T23N, K24N, W36Y, T39E, T40K, R57K, P59S, Q60S, P73S, I74T, S75P; vif: F39C, R41K, K63T, V65A, Q91L, R93G, Q136P, Q178P; vpr: H45Y, L68M; vpu: D3E, L5N, A6L, G8A, T24I, V26A, I28K, R41S, E44Q, R47S, G72E, N78D, L82M"}}}, {"name": "FJ213781", "node_attrs": {"div": 0.13568000000000002, "accession": "FJ213781", "clade_membership": {"value": "CRF38_BF1"}, "country": {"value": "UY"}, "date": {"value": 2004.0}, "Strain_name": {"value": "UY04_3987"}, "LANL_subtype": {"value": "CRF38_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200G", "T201C", "C258T", "A265G", "A286G", "-304T", "A386G", "C456T", "A492T", "A509G", "A515C", "A571T", "T595A", "C603A", "G615A", "A618C", "A632G", "A656G", "G703-", "-715A", "G743A", "C845T", "T978G", "T1028G", "A1073G", "A1088C", "A1208G", "C1211T", "A1217G", "G1232A", "A1274G", "G1302A", "G1311T", "A1359T", "G1404A", "T1444C", "A1449C", "A1492C", "T1501A", "C1627T", "G1664A", "A1687G", "C1693T", "C1721T", "A1733G", "-1746C", "-1747C", "-1748C", "C1749T", "C1751T", "T1752C", "T1754G", "C1756A", "G1766A", "A1771G", "C1787T", "C1825A", "T1826A", "C1833A", "G1846A", "T1854A", "A1857C", "T1868A", "G1886A", "A1897T", "G1901A", "G1936A", "A1958G", "A1968G", "T1986C", "C2010T", "T2043C", "A2060G", "C2075A", "T2080C", "C2097T", "A2200G", "A2210G", "A2222G", "A2295G", "A2297G", "A2304G", "T2315G", "T2386C", "A2403G", "T2464C", "A2498C", "G2518A", "A2623G", "T2631A", "T2632A", "A2637G", "G2664C", "A2677G", "A2707G", "A2738T", "C2739T", "A2750C", "T2779G", "G2830A", "G2842A", "A2929G", "T2935C", "G2947A", "G2969A", "A2985G", "A3031G", "A3124G", "A3138C", "A3221T", "C3415T", "T3431G", "A3450C", "A3651G", "G3755T", "C3763T", "G3805A", "G3869C", "G3901A", "C3908G", "A4109G", "C4130A", "T4144C", "G4145A", "C4147T", "A4195T", "T4288C", "T4388G", "T4585C", "G4622A", "G4637A", "A4642G", "C4645A", "T4701G", "A4775C", "A4781G", "A4838G", "G4864C", "G4871A", "A4970G", "C4988T", "A5046C", "C5050G", "G5308A", "A5447G", "A5448C", "C5461A", "G5462A", "T5471A", "T5478C", "T5482C", "G5499A", "G5543A", "C5554A", "A5557G", "C5578T", "A5601T", "A5613T", "G5647T", "T5727C", "G5729A", "G5730T", "G5737A", "G5781T", "-5824C", "-5825C", "-5826T", "-5827A", "-5828T", "-5829T", "-5830G", "-5831T", "C5833T", "C5834T", "A5845G", "C5869G", "G5893A", "C5917T", "G5948T", "T5964C", "A6020T", "C6026T", "A6030C", "C6116T", "T6134A", "-6170G", "-6171C", "-6172C", "-6175T", "G6179A", "-6180G", "C6181T", "T6187G", "A6195C", "T6196C", "G6198C", "C6199T", "-6201A", "G6204C", "C6208G", "C6209G", "T6210A", "G6211C", 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"A7705G", "A7706C", "A7721T", "A7741G", "G7807C", "A7880G", "A7885G", "A7903T", "A7921T", "C7954A", "A8019G", "A8069T", "C8080A", "G8085C", "A8086C", "G8087A", "A8093G", "A8098G", "C8103T", "G8105A", "A8118G", "G8141A", "A8144G", "T8145C", "A8150C", "A8204G", "A8228G", "G8255A", "A8258C", "G8269A", "G8288T", "C8320A", "T8321C", "G8350C", "-8375G", "G8385A", "T8387C", "G8436C", "A8449G", "G8462A", "T8483C", "A8489G", "A8503G", "G8512C", "C8514G", "A8597T", "C8684A", "C8687T", "A8719C", "G8799A", "A8804G", "T8832C", "G8905A", "A8918G", "A8922C", "A8924C", "C8952A", "A8967G"], "INT": ["V32L", "L45V", "T112A", "P119T", "A124T", "S205A", "G283S", "D288N"], "RT-p51": ["P1L", "T39A", "K43E", "D67G", "S68G", "K70R", "L74V", "K103R", "I135L", "V179E", "Y181C", "G190A", "T215F", "K219Q", "V292I", "K297R", "N348T", "T376S"], "RT-p66": ["P1L", "T39A", "K43E", "D67G", "S68G", "K70R", "L74V", "K103R", "I135L", "V179E", "Y181C", "G190A", "T215F", "K219Q", "V292I", "K297R", "N348T", "T376S", "S446A", "K452T", "L483Q", "N519S", "A554S"], "gp120": ["N5K", "A32S", "V37A", "I56L", "E59A", "L94I", "K107N", "-109T", "-111N", "-113T", "-114D", "S116L", "S117K", "-118E", "-119T", "-120P", "E122-", "S130T", "T134S", "V137I", "L142Q", "H145R", "N160T", "N161G", "S162T", "S181T", "D241K", "A253T", "I281-", "-282Q", "-283L", "R287K", "A288V", "K300Q", "G307R", "R316K", "V317I", "K318R", "-319A", "K320E", "K322M", "S323V", "-328A", "K332R", "L341P", "-367G", "-368Y", "-369N", "-370D", "-371T", "-372K", "-373S", "-374N", "-375E", "N414R", "N432K", "K433R", "N436H", "K474Q"], "gp41": ["L9I", "T101A", "D109N", "E110Q", "E119Q", "E129G", "R133K", "I135L", "N140Y", "I193V", "L206F", "D217E", "N239S", "S256C", "H259Q", "R261T", "D262N", "I264V", "A267V", "A268T", "N272G", "E280K", "I281A", "K283Q", "I301V", "I309V", "V318I", "I319L", "V329F"], "nef": ["G3A", "E15N", "G29P", "A32P", "D36G", "D54G", "W57S", "L58V", "V85F", "N126T", "V153I", "R188H", "I194L", "Q204K"], "p17": ["T53S", "Y79F", "F87Y", "Q90K", "V94I", "K95Q", "G123E"], "p2": ["V7A", "N9H", "A11-", "V12T", "-13V"], "p24": ["L83V", "V191I", "A194S", "T210S", "G225S"], "p6": ["N3S", "P5L", "-26Q", "K31R", "P49Q", "Q52K"], "p7": ["Q9P", "I12N", "A54V"], "pro": ["L10I", "T12K", "L19Q", "K20T", "L24I", "D30N", "L33F", "D35N", "M46I", "I54V", "K57R", "L63P", "A71V", "V82A", "N88D"], "rev": ["E10T", "Q36K", "Q74L", "L78I", "E79D", "R80Q", "H82R", "N84D", "S86N", "G98E", "N99S", "Q101P"], "tat": ["K24S", "R29K", "F32Y", "W36R", "T39I", "R56H", "Q60K", "S61G", "P68S", "T82K"], "vif": ["N19S", "T20K", "F39G", "K63N", "R93T", "I154L", "A155G"], "vpr": ["L68I"], "vpu": ["V14L", "R41N", "E44K", "E58D", "L73P", "V74I", "I75V", "P76F", "N80D"]}, "labels": {"aa": "INT: V32L, L45V, T112A, P119T, A124T, S205A, G283S, D288N; RT-p51: P1L, T39A, K43E, D67G, S68G, K70R, L74V, K103R, I135L, V179E, Y181C, G190A, T215F, K219Q, V292I, K297R, N348T, T376S; RT-p66: P1L, T39A, K43E, D67G, S68G, K70R, L74V, K103R, I135L, V179E, Y181C, G190A, T215F, K219Q, V292I, K297R, N348T, T376S, S446A, K452T, L483Q, N519S, A554S; gp120: N5K, A32S, V37A, I56L, E59A, L94I, K107N, -109T, -111N, -113T, -114D, S116L, S117K, -118E, -119T, -120P, E122-, S130T, T134S, V137I, L142Q, H145R, N160T, N161G, S162T, S181T, D241K, A253T, I281-, -282Q, -283L, R287K, A288V, K300Q, G307R, R316K, V317I, K318R, -319A, K320E, K322M, S323V, -328A, K332R, L341P, -367G, -368Y, -369N, -370D, -371T, -372K, -373S, -374N, -375E, N414R, N432K, K433R, N436H, K474Q; gp41: L9I, T101A, D109N, E110Q, E119Q, E129G, R133K, I135L, N140Y, I193V, L206F, D217E, N239S, S256C, H259Q, R261T, D262N, I264V, A267V, A268T, N272G, E280K, I281A, K283Q, I301V, I309V, V318I, I319L, V329F; nef: G3A, E15N, G29P, A32P, D36G, D54G, W57S, L58V, V85F, N126T, V153I, R188H, I194L, Q204K; p17: T53S, Y79F, F87Y, Q90K, V94I, K95Q, G123E; p2: V7A, N9H, A11-, V12T, -13V; p24: L83V, V191I, A194S, T210S, G225S; p6: N3S, P5L, -26Q, K31R, P49Q, Q52K; p7: Q9P, I12N, A54V; pro: L10I, T12K, L19Q, K20T, L24I, D30N, L33F, D35N, M46I, I54V, K57R, L63P, A71V, V82A, N88D; rev: E10T, Q36K, Q74L, L78I, E79D, R80Q, H82R, N84D, S86N, G98E, N99S, Q101P; tat: K24S, R29K, F32Y, W36R, T39I, R56H, Q60K, S61G, P68S, T82K; vif: N19S, T20K, F39G, K63N, R93T, I154L, A155G; vpr: L68I; vpu: V14L, R41N, E44K, E58D, L73P, V74I, I75V, P76F, N80D"}}}]}, {"name": "CRF38_BF1_NODE_0000002", "node_attrs": {"div": 0.10174000000000001, "clade_membership": {"value": "CRF38_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G424A", "A607G", "G771C", "A968C", "A3543G", "A4764C", "T5451C", "T5492C", "-5812C", "-5813T", "-5814T", "-5815G", "-5816T", "-5817T", "-5818A", "-5819T", "T6155C", "C6165-", "-6201C", "G6303A", "T6337C", "A7366G", "G7630T", "G8329A", "A8887T"], "RT-p51": ["A286T"], "gp120": ["T104S", "R150K", "H324Y", "-369N"], "gp41": ["H258R"], "nef": ["R49K"], "p17": ["R30K"], "p24": ["A14P", "E79D"], "vif": ["K60Q"]}, "labels": {"aa": "RT-p51: A286T; gp120: T104S, R150K, H324Y, -369N; gp41: H258R; nef: R49K; p17: R30K; p24: A14P, E79D; vif: K60Q"}}, "children": [{"name": "FJ213783", "node_attrs": {"div": 0.13920000000000002, "accession": "FJ213783", "clade_membership": {"value": "CRF38_BF1"}, "country": {"value": "UY"}, "date": {"value": 2003.0}, "Strain_name": {"value": "UY03_3389"}, "LANL_subtype": {"value": "CRF38_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T153C", "A263G", "T303A", "A410T", "A437C", "A492T", "G495T", "A518G", "G520C", "G524T", "A581G", "C587T", "G608A", "G614T", "C623T", "T641A", "C662G", "A797T", "C1004A", "C1091T", "C1103T", "A1106C", "T1166C", "C1175T", "A1188C", "G1192A", "A1242G", "C1243T", "C1245G", "G1260T", "G1277A", "G1298A", "T1299C", "A1328G", "A1329T", "A1349T", "A1367G", "G1380T", "A1418G", "A1429C", "A1452T", "A1455G", "G1472A", "A1476G", "A1492C", "T1501C", "A1656C", "A1687G", "A1701T", "G1718A", "C1721T", "-1746C", "-1747C", "-1748C", "C1751T", "T1752C", "T1754G", "C1756A", "A1772G", "C1782A", "G1841A", "C1865T", "G1912A", "C1985T", "T1986G", "G2001A", "A2002C", "C2010T", "G2027A", "C2044A", "A2176C", "A2200G", "A2210G", "A2215T", "G2343A", "T2386C", "A2400G", "T2494C", "A2612C", "A2677G", "G2682A", "A2743C", "A2839G", "G2937A", "C2941T", "G2956A", "C2960T", "A2972G", "A2984G", "A3010G", "A3019G", "A3027G", "C3067A", "A3071G", "A3080G", "G3085A", "C3095T", "A3096G", "A3097T", "A3154G", "A3162G", "G3169A", "G3170A", "G3173A", "C3178T", "A3190G", "A3196G", "C3207T", "A3221T", "C3223A", "A3224G", "C3225T", "A3229G", "A3258G", "G3259A", "A3264G", "A3274C", "T3276A", "G3283A", "A3293G", "C3303T", "A3304G", "A3316G", "A3334G", "C3352T", "C3355T", "T3358A", "C3359T", "A3364G", "A3450C", "C3535T", "C3542A", "G3544C", "A3571G", "T3602C", "A3676G", "C3763A", "A3766G", "A3817G", "G3952A", "A4063G", "C4140T", "G4148A", "G4150A", "A4264C", "A4319T", "C4321T", "A4391T", "A4414T", "A4452T", "A4455C", "A4564G", "G4573A", "G4708A", "G4766A", "C4771A", "T4832A", "G4856A", "G4865C", "G4888A", "A5055C", "G5121A", "T5147C", "G5176A", 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"G8795T", "A8804G", "A8837G", "A8859G", "T8860C", "G8861A", "T8864C", "G8875A", "A8886G", "G8888C", "A8893G", "T8927C", "C8952G", "A8954G", "G8955A", "-8997G", "A8998-", "-9014G", "G9016T", "C9045T", "A9050C"], "INT": ["T122I", "A125T", "Q163N", "I182F", "T206S", "L213F", "Y226F", "Y227S"], "RT-p51": ["T39A", "E40D", "R83K", "K102R", "K173Q", "G196E", "R281K", "I293V", "K297E", "K311R", "D324E", "I326V", "I329V", "Q334C", "K356R", "G359S", "A360T", "A371V", "T376S", "T377V", "K388R", "K390R", "L394Q", "T400A", "T403M"], "RT-p66": ["T39A", "E40D", "R83K", "K102R", "K173Q", "G196E", "R281K", "I293V", "K297E", "K311R", "D324E", "I326V", "I329V", "Q334C", "K356R", "G359S", "A360T", "A371V", "T376S", "T377V", "K388R", "K390R", "L394Q", "T400A", "T403M", "K452T", "L483S"], "gp120": ["N5K", "D34E", "I56V", "V57F", "E59K", "N64E", "N105D", "K107S", "N108A", "-109P", "T110K", "-111T", "-113D", "-114S", "-115T", "S116L", "S117E", "-123K", "Q127K", "S130T", "V137I", "H145Q", "A146S", "N157D", "N158G", "N161S", "T174K", "K203E", "T212R", "K224R", "D241E", "L260F", "-280H", "I281L", "R287Q", "A291T", "H302Y", "Q309H", "K312N", "-319E", "K322R", "-328E", "-367A", "-368S", "-370N", "-371G", "A408T", "N414D", "N418R", "N432Q", "N436G", "T437S", "E438C", "G443Q", "K472R"], "gp41": ["L9I", "Y108H", "M118R", "E119Q", "E130G", "S138A", "Q147K", "A151E", "V187I", "L206F", "H209R", "I210F", "G230D", "N239S", "V245A", "I264T", "N272G", "K283Q", "S293I", "L304F", "V318I", "L345I"], "nef": ["S8R", "S9R", "P14A", "E15D", "V33A", "E38D", "A50D", "L55V", "F139M", "E151D", "M173A", "R178K", "K182V", "K184R", "D205N"], "p1": ["N9H"], "p17": ["T53S", "A54S", "I61M", "G62A", "Q63H", "K91R", "E93D", "D102E", "N109K"], "p2": ["E2A", "T10S"], "p24": ["I153L", "R154K", "T171V", "L172V", "A177S", "T200S", "A217S"], "p6": ["N3S", "T8S", "S24P", "-26Q", "L35M"], "p7": ["S4G", "Q9P", "I12T"], "pro": ["V15I", "L63C", "G68D", "A71V", "V77I", "I93L"], "rev": ["D7G", "V16I", "Y28F", "I55L", "Q101P", "I102V", "S106P", "E111D"], "tat": ["N7K", "D9E", "T23N", "Y47H", "S62N", "I74V"], "vif": ["F39C", "R41K", "A62D", "R93S", "G101D", "K157Q", "E179K"], "vpr": ["G6E", "Y15H", "N28A", "I61T", "I63T", "I84H"], "vpu": ["D3N", "A6V", "A10V", "K31R", "L33I", "M71V", "G72Q"]}, "labels": {"aa": "INT: T122I, A125T, Q163N, I182F, T206S, L213F, Y226F, Y227S; RT-p51: T39A, E40D, R83K, K102R, K173Q, G196E, R281K, I293V, K297E, K311R, D324E, I326V, I329V, Q334C, K356R, G359S, A360T, A371V, T376S, T377V, K388R, K390R, L394Q, T400A, T403M; RT-p66: T39A, E40D, R83K, K102R, K173Q, G196E, R281K, I293V, K297E, K311R, D324E, I326V, I329V, Q334C, K356R, G359S, A360T, A371V, T376S, T377V, K388R, K390R, L394Q, T400A, T403M, K452T, L483S; gp120: N5K, D34E, I56V, V57F, E59K, N64E, N105D, K107S, N108A, -109P, T110K, -111T, -113D, -114S, -115T, S116L, S117E, -123K, Q127K, S130T, V137I, H145Q, A146S, N157D, N158G, N161S, T174K, K203E, T212R, K224R, D241E, L260F, -280H, I281L, R287Q, A291T, H302Y, Q309H, K312N, -319E, K322R, -328E, -367A, -368S, -370N, -371G, A408T, N414D, N418R, N432Q, N436G, T437S, E438C, G443Q, K472R; gp41: L9I, Y108H, M118R, E119Q, E130G, S138A, Q147K, A151E, V187I, L206F, H209R, I210F, G230D, N239S, V245A, I264T, N272G, K283Q, S293I, L304F, V318I, L345I; nef: S8R, S9R, P14A, E15D, V33A, E38D, A50D, L55V, F139M, E151D, M173A, R178K, K182V, K184R, D205N; p1: N9H; p17: T53S, A54S, I61M, G62A, Q63H, K91R, E93D, D102E, N109K; p2: E2A, T10S; p24: I153L, R154K, T171V, L172V, A177S, T200S, A217S; p6: N3S, T8S, S24P, -26Q, L35M; p7: S4G, Q9P, I12T; pro: V15I, L63C, G68D, A71V, V77I, I93L; rev: D7G, V16I, Y28F, I55L, Q101P, I102V, S106P, E111D; tat: N7K, D9E, T23N, Y47H, S62N, I74V; vif: F39C, R41K, A62D, R93S, G101D, K157Q, E179K; vpr: G6E, Y15H, N28A, I61T, I63T, I84H; vpu: D3N, A6V, A10V, K31R, L33I, M71V, G72Q"}}}, {"name": "CRF38_BF1_NODE_0000003", "node_attrs": {"div": 0.11701000000000002, "clade_membership": {"value": "CRF38_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "C536T", "C537A", "G557A", "T595G", "A606G", "T641C", "A656G", "C679A", "G770A", "A803G", "A810G", "A833C", "A1046T", "A1278G", "A1279G", "C1295A", "A1319C", "C1350A", "A1450G", "G1498A", "G1527C", "C1535T", "C1541T", "A1543G", "A1614C", "A1620G", "G1670T", "C1692A", "G1773A", "C2281T", "C2356T", "A2623T", "G2761A", "A2809G", "C2863T", "G2921A", "T2922C", "C3056T", "G3099A", "T3165G", "A3224C", "C3225A", "A3292T", "G3340A", "T3497C", "A3670G", "G3805A", "A3808C", "A3825G", "G3884A", "T4039C", "C4147A", "A4285G", "G4294A", "G4702A", "T5028C", "A5046C", "C5050G", "T5239C", "A5372G", "T5436G", "G5538A", "A5548C", "A5706G", "G5720A", "A5845G", "A5866C", "A5915G", "A6065T", "A6164-", "T6166-", "T6169-", "T6193C", "T6271C", "T6279A", "A6324G", "A6335G", "G6490T", "G6550A", "-6697A", "-6698T", "-6699C", "-6700G", "-6701A", "-6702T", "A6712G", "T6735A", "G6776A", "A6777C", "T6794G", "A6800C", "-6830C", "-6831C", "-6832T", "A6936G", "-6989G", "-6990A", "-6992A", "-7002A", "G7152C", "T7228C", "A7256G", "A7279G", "A7463C", "T7561C", "C7579T", "C7605A", "A7626T", "T7627G", "G7628A", "G7631C", "G7660A", "A7690T", "A7711G", "C7723A", "T7796A", "A7801C", "G7831A", "T7894C", "A7929T", "G8017C", "A8029G", "G8030A", "C8031G", "C8038G", "G8117A", "G8170A", "G8349A", "T8387A", "G8479A", "A8503C", "G8654A", "T8720C"], "INT": ["E11D", "N17S", "V37I"], "RT-p51": ["M35I", "V276T", "P321S", "G335D", "M357R", "T377Q", "E399D"], "RT-p66": ["M35I", "V276T", "P321S", "G335D", "M357R", "T377Q", "E399D", "S468P"], "gp120": ["E4D", "T21A", "N71Y", "-119L", "-120K", "-121E", "L142Q", "N157S", "-280S", "D294E", "E308T", "L314V", "K361R", "-367E", "-368F", "I468V"], "gp41": ["N42S", "M54L", "T101N", "Y108L", "D109N", "E110Q", "E129N", "S165T", "K166N", "M176I", "H209L", "A243S", "L340F"], "nef": ["G3S", "S46N", "D54A"], "p17": ["A15T", "L68I", "F87Y", "K91G", "T115K"], "p2": ["N9-"], "p24": ["I27V", "N183G", "P207T"], "p6": ["P5T", "D32N"], "p7": ["R11K", "E21Q", "K26R", "T50P", "R52G"], "rev": ["S8N", "E10A", "E11D", "E57Q", "S61E", "L64V", "G90E", "A108T"], "tat": ["T58P"], "vif": ["I154L", "A155G"], "vpu": ["R38K", "N80D"]}, "labels": {"aa": "INT: E11D, N17S, V37I; RT-p51: M35I, V276T, P321S, G335D, M357R, T377Q, E399D; RT-p66: M35I, V276T, P321S, G335D, M357R, T377Q, E399D, S468P; gp120: E4D, T21A, N71Y, -119L, -120K, -121E, L142Q, N157S, -280S, D294E, E308T, L314V, K361R, -367E, -368F, I468V; gp41: N42S, M54L, T101N, Y108L, D109N, E110Q, E129N, S165T, K166N, M176I, H209L, A243S, L340F; nef: G3S, S46N, D54A; p17: A15T, L68I, F87Y, K91G, T115K; p2: N9-; p24: I27V, N183G, P207T; p6: P5T, D32N; p7: R11K, E21Q, K26R, T50P, R52G; rev: S8N, E10A, E11D, E57Q, S61E, L64V, G90E, A108T; tat: T58P; vif: I154L, A155G; vpu: R38K, N80D"}}, "children": [{"name": "FJ213782", "node_attrs": {"div": 0.13823000000000002, "accession": "FJ213782", "clade_membership": {"value": "CRF38_BF1"}, "country": {"value": "UY"}, "date": {"value": 2004.0}, "Strain_name": {"value": "UY04_4022"}, "LANL_subtype": {"value": "CRF38_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A133-", "C151A", "A152C", "A161C", "A224G", "G317A", "G325A", "T396C", "G407C", "A435C", "G495A", "G595A", "G620A", "C774A", "T1040C", "A1242G", "C1243T", "C1319T", "A1377G", "A1455G", "A1475C", "G1552A", "A1587G", "A1618G", "A1700C", "C1702G", "A1703C", "G1704C", "C1707A", "A1709C", "C1714A", "A1743-", "C1744-", "C1745-", "-1746A", "-1747C", "-1748T", "T1826G", "G1845A", "C1903A", "A1969G", "G2341A", "T2386C", "G2447A", "T2499G", "T2653C", "T2735C", "A2755G", "A2875G", "A3103G", "G3127A", "A3214G", "A3302G", "T3349C", "A3450C", "A3454G", "T3493G", "C3542T", "G3664A", "G3755T", "A3880G", "C3908A", "C4069T", "A4076C", "A4264T", "C4321T", "T4347G", "T4348A", "T4388G", "A4403T", "G4407A", "A4414T", "A4440T", "C4444A", "A4452T", "G4549A", "A4642G", "A4702T", "T4717G", "T4718G", "G4737A", "C4764G", "G4871T", "C4902T", "A4937G", "G5121C", "G5143A", "A5159G", "A5225G", "G5269A", "A5293G", "A5325G", "T5336G", "A5383G", "G5565A", "G5599T", "G5614T", "T5616C", "C5663T", "C5704A", "A5718G", "T5778C", "T5813C", "C5833T", "C5834T", "-5861G", "-5862C", "-5863T", "A5935C", "A6020T", "C6067T", "T6148C", "T6163-", "A6176-", "A6177-", "T6178-", "G6179-", "C6181T", "C6183G", "A6188G", "C6193A", "T6196C", "A6203C", "G6204T", "C6205G", "C6207A", "C6209A", "T6210G", "G6211C", "-6213C", "G6214C", "G6215C", "A6216T", "A6217G", "G6218C", "A6219T", "A6223G", "G6225A", "G6226A", "C6228A", "A6229G", "G6263A", "C6278A", "A6326G", "T6331C", "T6341A", "C6343T", "A6353C", "A6488T", "C6489T", "A6573G", "G6605A", "A6674G", "A6675C", "A6686-", "G6687-", "-6692G", "-6693G", "G6716A", "G6732A", "G6767A", "G6773A", "-6809G", "A6814G", "G6821A", "-6833A", "-6834A", "A6836G", "A6837G", "T6838A", "C6843T", "T6888C", "G6889A", "T6901C", "C6938T", "-6947G", "-6948A", "-6949T", "-6950A", "-6951C", "-6952A", "-6953G", "-6954A", "-6955A", "-6956T", "-6957T", "-6958C", "-6959A", "-6960A", "-6961T", "-6962A", "-6963A", "-6964T", "-6965A", "-6966C", "-6985A", "-6986G", "-6987A", "-6988A", "-6993A", "-6994T", "C7006T", "T7009C", "G7040A", "T7147G", "C7148A", "A7151G", "C7152T", "A7153C", "A7155C", "T7156A", "-7162T", "G7291A", "G7293A", "A7297G", "G7391A", "T7433C", "A7532C", "G7552A", "A7589G", "T7603C", "G7658C", "A7710G", "A7722T", "C7742A", "C7755A", "A7800G", "T7884C", "G7892T", "T7893G", "T7930C", "A7931C", "A7995G", "T8112C", "G8128A", "A8143G", "G8157T", "T8176C", "G8264T", "C8265T", "G8288A", "G8368T", "T8369A", "A8370G", "A8372G", "G8373-", "T8374-", "G8414C", "G8427A", "A8489T", "A8584T", "G8588A", "A8597T", "C8676T", "C8789T", "C8873A", "A8874G", "T8887G", "G8888A", "G8929A", "G8935A", "C9041T"], "INT": ["L45I", "I101L", "Q163N", "I191R", "S205A", "T210S", "R211K", "L213F", "N222I", "F223L", "Y226F"], "RT-p51": ["V118I", "I135R", "F214L", "T403A"], "RT-p66": ["V118I", "I135R", "F214L", "T403A", "K452T", "L483W", "A554S"], "gp120": ["-3A", "I56L", "-109S", "-111L", "T112N", "S117T", "-118L", "-123T", "V137I", "Q142K", "N158D", "N160S", "N161G", "N167H", "T212F", "E240G", "D251N", "N274A", "S278G", "A288T", "G293E", "E294K", "V305I", "G307R", "-319A", "S323T", "-328G", "-329T", "T330I", "M345T", "-379N", "-380T", "-381E", "-382D", "-383N", "-384D", "V396I", "K433V", "N434T", "R480K"], "gp41": ["A30T", "K77Q", "T96A", "E119Q", "E136G", "N140I", "Q147K", "A151E", "N166S", "V194A", "V197C", "I210L", "K231R", "I270T", "W285L", "A321F", "V329I"], "nef": ["S9I", "I10V", "V11-", "E24D", "G29R", "K49S", "Y81F", "V85F", "D177E", "R178G", "K182R", "R196K", "R198K"], "p17": ["I34L", "A54T"], "p2": ["-9S"], "p24": ["L15I", "T171V", "T216A"], "p6": ["T8S", "A9P", "P10T", "A12E"], "p7": ["K3N", "R29K", "R41G", "E51G"], "pro": ["L10V", "G16E", "D35E", "I93L"], "rev": ["R17K", "Y28P", "E94K", "N99D", "L103F"], "tat": ["I3V", "I74S"], "vif": ["N19S", "F44W", "V51I", "Q60E", "R95S", "E179Q", "S186N"], "vpr": ["G6A", "T19A", "S41G", "I63M", "I74V", "H77Q", "N93S"], "vpu": ["D3Y", "A19V", "L33M", "D60E", "A61L", "E62A", "E63A", "A65G", "A66E", "L67M", "-69V", "E70I", "M71F", "L73N", "V74I", "I75-", "P76-", "G77-", "N78-", "I79-"]}, "labels": {"aa": "INT: L45I, I101L, Q163N, I191R, S205A, T210S, R211K, L213F, N222I, F223L, Y226F; RT-p51: V118I, I135R, F214L, T403A; RT-p66: V118I, I135R, F214L, T403A, K452T, L483W, A554S; gp120: -3A, I56L, -109S, -111L, T112N, S117T, -118L, -123T, V137I, Q142K, N158D, N160S, N161G, N167H, T212F, E240G, D251N, N274A, S278G, A288T, G293E, E294K, V305I, G307R, -319A, S323T, -328G, -329T, T330I, M345T, -379N, -380T, -381E, -382D, -383N, -384D, V396I, K433V, N434T, R480K; gp41: A30T, K77Q, T96A, E119Q, E136G, N140I, Q147K, A151E, N166S, V194A, V197C, I210L, K231R, I270T, W285L, A321F, V329I; nef: S9I, I10V, V11-, E24D, G29R, K49S, Y81F, V85F, D177E, R178G, K182R, R196K, R198K; p17: I34L, A54T; p2: -9S; p24: L15I, T171V, T216A; p6: T8S, A9P, P10T, A12E; p7: K3N, R29K, R41G, E51G; pro: L10V, G16E, D35E, I93L; rev: R17K, Y28P, E94K, N99D, L103F; tat: I3V, I74S; vif: N19S, F44W, V51I, Q60E, R95S, E179Q, S186N; vpr: G6A, T19A, S41G, I63M, I74V, H77Q, N93S; vpu: D3Y, A19V, L33M, D60E, A61L, E62A, E63A, A65G, A66E, L67M, -69V, E70I, M71F, L73N, V74I, I75-, P76-, G77-, N78-, I79-"}}}, {"name": "JN235962", "node_attrs": {"div": 0.13287000000000002, "accession": "JN235962", "clade_membership": {"value": "CRF38_BF1"}, "country": {"value": "UY"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UY_TRA0123"}, "LANL_subtype": {"value": "CRF38_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G508A", "A571T", "G582A", "T596G", "A697G", "C774T", "T861G", "A1263T", "A1328G", "A1464T", "G1604A", "C1610A", "A1673G", "A1709G", "A1715G", "A1772G", "T1995C", "T1996C", "C2005A", "C2013T", "C2075A", "G2343A", "T2464C", "G2548A", "A2599G", "G2842A", "A2881G", "T2899C", "A3080C", "A3096C", "C3100T", "T3331C", "G3523A", "C3535A", "G3543T", "G3686A", "G3916A", "C4140T", "T4216C", "A4262C", "C4444T", "C4643A", "A4695G", "G4708A", "A4728C", "G4735A", "C4786T", "C4907T", "G5030A", "T5171C", "T5197G", "G5211T", "A5431G", "A5433C", "T5515C", "G5543A", "A5601C", "T5684C", "G5700A", "T6046A", "A6158C", "-6173A", "-6174A", "-6175G", "-6180T", "A6185G", "A6186C", "T6187C", "C6190T", "A6195G", "A6197C", "G6198A", "C6199A", "C6201A", "C6202T", "-6213A", "A6221C", "A6281C", "T6289A", "A6330G", "G6333A", "G6336A", "C6364T", "G6532A", "A6581G", "C6612T", "A6617G", "C6618T", "A6734G", "A6749C", "G6754A", "G6801A", "C6810G", "A6811C", "T6815G", "A6817T", "G6820A", "T6823C", "A6825T", "T6826A", "C6829T", "A6839G", "T6851C", "C6925T", "A6926G", "A6935G", "-6993C", "-6994A", "-6995G", "-6996A", "-6997A", "-6998T", "-6999T", "-7000C", "G7004A", "C7127A", "A7149C", "T7150C", "A7151C", "A7161C", "-7162G", "A7163G", "C7164A", "A7165G", "A7249G", "T7250C", "G7322A", "A7689G", "A7714G", "G7720A", "A7722G", "G7807A", "T7813C", "C8048T", "G8107A", "A8193G", "T8239C", "A8297G", "C8323T", "-8375T", "G8488A", "C8491A", "G8554C", "A8576G", "T8595G", "T8646C", 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"H82T", "I83L", "N84D", "S86N", "Q91T", "G92S", "T93G", "E94T", "A108T"], "tat": ["T39I", "T58A", "S61G", "I64T", "P68S", "V69L"], "vpu": ["S2Q", "D3P", "L5Q", "A6I", "A10V", "I13V", "L16A", "T24S", "Y27L", "K31R", "L33I", "V34L", "N40D", "Y43I"]}, "labels": {"aa": "RT-p51: A286T, K356R; RT-p66: K356R; gp120: -3T, N105-, -123P, N161S; gp41: D109E, V245I, N251S, H259R, F263L, I264L, A268T, D272E, R273L, G274L, L275G, V329I; nef: F139L; p17: A15R; p2: -13V; rev: Y18L, S62T, C63Y, H82T, I83L, N84D, S86N, Q91T, G92S, T93G, E94T, A108T; tat: T39I, T58A, S61G, I64T, P68S, V69L; vpu: S2Q, D3P, L5Q, A6I, A10V, I13V, L16A, T24S, Y27L, K31R, L33I, V34L, N40D, Y43I"}}, "children": [{"name": "results/subtype_trees/CRF17_BF1.nwk", "node_attrs": {"div": 0.10357000000000001, "clade_membership": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "A369G", "T595A", "G771T", "C944T", "A1450G", "T1724C", "G1734-", "A1735-", "G1736-", "T1752C", "C1753A", "G1912A", "A1926G", "C2075A", 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"P23T", "S24P", "P25H", "-26P"], "pro": ["K43R"], "rev": ["I21F", "Y28F", "V109I"], "tat": ["K24R", "R29K", "D67V", "S75P"], "vif": ["H48N", "E61D"], "vpu": ["D60E", "A61L", "E62S", "E63A", "A65V", "A66E", "L67M", "E70-", "M71-", "G72-", "P73H", "F74H", "I75A", "G77W", "N78D", "N81D"]}, "labels": {"aa": "RT-p51: D123E, R281K; RT-p66: D123E, R281K; gp120: T3A, A253T, I281-, P326T, N327-, L341P, -369N, -371T, I439T; gp41: G5A, I210P; nef: P24E; p17: K12E, F87Y; p2: N9-, A11-, V12T; p24: A14S, H87Q, N183G; p6: E19-, I21Q, T22I, P23T, S24P, P25H, -26P; pro: K43R; rev: I21F, Y28F, V109I; tat: K24R, R29K, D67V, S75P; vif: H48N, E61D; vpu: D60E, A61L, E62S, E63A, A65V, A66E, L67M, E70-, M71-, G72-, P73H, F74H, I75A, G77W, N78D, N81D", "clade": "CRF17_BF1"}}, "children": [{"name": "CRF17_BF1_NODE_0000001", "node_attrs": {"div": 0.10554000000000001, "clade_membership": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G495T", "T1741A", "T5451C", "A5621C", "A6020G", "C6207G", "G6339A", "A6554-", "-6693G", "G6714A", "A6776G", "-6948A", "-6949C", "-6951C", "G7630A", "A7921T", "A8036T", "G8330A", "-9009A"], "RT-p66": ["K527E"], "gp120": ["I56V"], "gp41": ["V7M", "L206F", "I245F", "A343I"], "p17": ["A54S"], "p6": ["Q21K"], "vpu": ["Q5A"]}, "labels": {"aa": "RT-p66: K527E; gp120: I56V; gp41: V7M, L206F, I245F, A343I; p17: A54S; p6: Q21K; vpu: Q5A"}}, "children": [{"name": "EU581828", "node_attrs": {"div": 0.13225, "accession": "EU581828", "clade_membership": {"value": "CRF17_BF1"}, "country": {"value": "PE"}, "date": {"value": 2002.0}, "Strain_name": {"value": "PE02_PCR0155"}, "LANL_subtype": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T422C", "G424A", "T467C", "T473C", "G520C", "A595G", "A666T", "A678G", "G696A", "C719T", "A764G", "G810A", "C823G", "G829A", "T852A", "A860G", "T992A", "G1022A", "T1046G", "C1060A", "A1088T", "G1192A", "C1292G", "T1334C", "A1339G", "C1350T", "A1449G", "A1524C", "A1525G", "A1644G", "A1660G", "C1692A", "G1713T", 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"A7689G", "G7714A", "G7717A", "G7729A", "G7790A", "A7791G", "T7813C", "A7818G", "G7831A", "T7931C", "C8009A", "T8035G", "A8051C", "A8069T", "G8079A", "C8080A", "C8103T", "G8144A", "C8277T", "T8290C", "C8291T", "A8314G", "T8321C", "C8331T", "T8337A", "G8349A", "A8363G", "C8386A", "T8387G", "A8413G", "G8414A", "A8455G", "G8458A", "C8486T", "A8531C", "A8573G", "T8595A", "A8663G", "C8688A", "A8750C", "G8787A", "T8864G", "A8870T", "A8887T", "G8905T", "C8913T", "G8915T", "A8922C", "G8935A", "C9039T", "C9041T", "C9078T", "T9108C"], "INT": ["K14R", "V54I", "P119T", "I203M"], "RT-p51": ["S163R", "F214L", "K281R", "I341V", "V365I", "R390K", "L394Q"], "RT-p66": ["S163R", "F214L", "K281R", "I341V", "V365I", "R390K", "L394Q", "S446A", "K550R"], "gp120": ["A3T", "E4K", "N5D", "K18R", "A32G", "D34E", "-109A", "-110N", "-111A", "-112T", "-113K", "-114S", "-115A", "-116S", "-117A", "T229-", "L231-"], "gp41": ["N42S", "M54L", "T96A", "T101A", "S107T", "Q108L", "E110Q", "K122R", "E129R", "D163S", "K172R", "M176I", "S256C", "R259Q", "A267V", "A281T", "A325V", "L330F", "L345Q"], "nef": ["G3S", "E24G", "E38G", "R39K", "R49S", "E63D", "V85I", "H116N", "D149N", "D174E", "E176D", "K182M", "L191F", "I194L", "R198K"], "p1": ["I5V", "K10R"], "p17": ["R30K", "G62A", "Y87C", "D102E", "S111C", "T115A", "D121N"], "p2": ["-9G"], "p24": ["V27I", "A31G", "S33N", "S41T", "T110N", "R154K", "D187E", "K203R", "P207S"], "p6": ["P5T", "A12L", "H25D", "L35Q"], "p7": ["K20R"], "pro": ["V15I", "L63P", "I72V", "Q92M"], "rev": ["E11D", "F21A", "F28S", "A54E", "Y63V", "E68A", "Q74L", "L78I", "S99N"], "tat": ["K29R", "A58S", "Q63K", "V67S"], "vif": ["M29I", "A35T", "R37N", "F39S", "V51I", "E60G", "T67A", "V85A", "R93G", "I109T", "S116A", "K122N", "K128R", "N140K", "G185E"], "vpr": ["F72Y", "I84T"], "vpu": ["A16I", "I18L", "L27I", "R45K"]}, "labels": {"aa": "INT: K14R, V54I, P119T, I203M; RT-p51: S163R, F214L, K281R, I341V, V365I, R390K, L394Q; RT-p66: S163R, F214L, K281R, I341V, V365I, R390K, L394Q, S446A, K550R; gp120: A3T, E4K, N5D, K18R, A32G, D34E, -109A, -110N, -111A, -112T, -113K, -114S, -115A, -116S, -117A, T229-, L231-; gp41: N42S, M54L, T96A, T101A, S107T, Q108L, E110Q, K122R, E129R, D163S, K172R, M176I, S256C, R259Q, A267V, A281T, A325V, L330F, L345Q; nef: G3S, E24G, E38G, R39K, R49S, E63D, V85I, H116N, D149N, D174E, E176D, K182M, L191F, I194L, R198K; p1: I5V, K10R; p17: R30K, G62A, Y87C, D102E, S111C, T115A, D121N; p2: -9G; p24: V27I, A31G, S33N, S41T, T110N, R154K, D187E, K203R, P207S; p6: P5T, A12L, H25D, L35Q; p7: K20R; pro: V15I, L63P, I72V, Q92M; rev: E11D, F21A, F28S, A54E, Y63V, E68A, Q74L, L78I, S99N; tat: K29R, A58S, Q63K, V67S; vif: M29I, A35T, R37N, F39S, V51I, E60G, T67A, V85A, R93G, I109T, S116A, K122N, K128R, N140K, G185E; vpr: F72Y, I84T; vpu: A16I, I18L, L27I, R45K"}}}, {"name": "CRF17_BF1_NODE_0000002", "node_attrs": {"div": 0.11117, "clade_membership": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A509G", "A571T", "A595T", "A1642G", "C1670A", "C1730T", "-1736A", "T1796C", "T2737C", "A2972G", "G4677A", "G5290A", "G5447A", "T5478C", "G5558A", "A5739T", "C5859T", "A5865G", "A6076G", "-6167A", "-6168A", "-6170G", "-6171C", "-6172C", "-6173A", "-6174C", "-6175T", "A6176G", "C6187T", "T6577G", "C6618T", "-6809G", "G6810A", "G6821T", "-6833A", "-6834A", "T6876C", "C6938T", "-6952A", "-6954T", "-6957T", "-6959A", "-6960A", "-6961T", "T7153C", "A7158C", "G7181T", "A7313T", "G7426A", "G7428A", "C7463A", "T7642A", "G7658C", "G7735A", "C8065T", "T8214-", "G8590C", "G8807A"], "RT-p51": ["I293V"], "RT-p66": ["I293V"], "gp120": ["A2V", "E4G", "-105N", "L142Q"], "gp41": ["A5G", "E119Q"], "nef": ["E38D", "G83A"], "p1": ["K4R"], "p17": ["Y79F", "Y87F"], "p2": ["T10S", "-11T"], "p24": ["Q87H"], "rev": ["A15T", "Y63F"], "tat": ["R24K", "G61D"], "vif": ["V31I"], "vpu": ["E44D"]}, "labels": {"aa": "RT-p51: I293V; RT-p66: I293V; gp120: A2V, E4G, -105N, L142Q; gp41: A5G, E119Q; nef: E38D, G83A; p1: K4R; p17: Y79F, Y87F; p2: T10S, -11T; p24: Q87H; rev: A15T, Y63F; tat: R24K, G61D; vif: V31I; vpu: E44D"}}, "children": [{"name": "EU581826", "node_attrs": {"div": 0.14528000000000002, "accession": "EU581826", "clade_membership": {"value": "CRF17_BF1"}, "country": {"value": "AR"}, "date": {"value": 2002.0}, "Strain_name": {"value": "AR02_ARG2233"}, "LANL_subtype": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G353T", "G369A", "A374G", "A386G", "G424A", "A431G", "A435C", "A500T", "C507A", "G508A", "G519C", "G520A", "A521G", "A604G", "A606G", "G609A", "G641C", "C767T", "T771G", "A836G", "G869A", "T875C", "T978A", "T979C", "C1013T", "A1073G", "A1115G", "G1199A", "G1260T", "C1261G", "A1263T", "A1271T", "T1344A", "A1349G", "C1362T", "A1442G", "A1476G", "G1498A", "A1508G", "A1526G", "A1543G", "T1676C", "G1713T", "A1733-", "A1742G", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "C1752T", "T1754C", "C1756A", "C1775A", "A1819G", "A1834C", "G1852A", "C1985A", "T1986C", "A2059G", "T2086C", "A2198G", "C2199T", "C2452T", "A2464C", "G2470A", "T2520C", "A2557G", "G2728A", "G2830A", "A2985C", "C3002T", "T3045C", "G3046A", "T3049C", "A3080G", "C3100T", "T3118A", "G3168A", "A3221G", "A3279G", "A3370G", "C3399A", "A3430C", "G3442A", "T3469C", "G3477A", "G3491A", "T3497A", "C3511T", "G3529A", "C3535A", "G3569A", "C3649T", "A3674G", "C3712T", "T3751C", "A3766G", "T3844C", "T3853C", "A3982G", "T4005C", "A4060G", "T4153C", "A4303G", "A4661G", "G4723C", "A4728C", "A4878G", "G4887A", "C4890T", "C4902T", "A4952T", "C4965T", "A4969G", "A4971G", "G5030A", "G5069A", "T5073-", "G5121A", "A5200G", "A5225G", "C5237T", "A5246C", "A5324G", "T5336G", "T5356C", "C5444A", "C5445T", "T5471A", "C5481T", "T5492C", "A5533G", "A5544G", "A5555C", "C5567A", "T5576C", "C5584T", "C5602A", "C5688T", "T5707C", "A5720G", "T5789C", "T5791G", "G5800A", "C5916A", "C5917A", "C5929T", "G5954A", "A5955G", "T6025C", "A6030G", "A6061C", "A6065T", "A6177C", "T6178C", "G6179A", "C6180G", "C6181T", "A6182G", "C6183T", "A6188C", "-6195C", "T6196C", "C6198A", "A6203C", "G6204C", "C6205T", "A6206C", "G6207A", "C6208A", "C6209A", "T6210A", "G6211C", "G6214C", "A6216T", "A6217C", "G6218C", "A6219T", "C6221A", "C6222A", "A6223G", "G6225A", "G6226A", "C6228A", "A6229G", "C6233A", "G6263A", "T6279A", "G6280A", "A6282G", "G6303A", "C6305G", "A6311G", "A6323G", "A6324G", "A6330G", "T6331C", "T6337G", "-6340T", "G6392A", "T6460G", "A6489G", "A6525G", "G6547A", "-6554A", "C6591T", "C6593A", "T6607G", "A6614G", "A6616C", "A6685G", "-6688T", "-6689A", "-6690T", "-6691A", "-6692C", "A6695T", "-6697T", "A6703-", "G6773A", "G6774A", "G6776T", "A6807G", "T6824C", "-6830A", "-6831C", "-6832A", "A6836G", "A6837C", "T6838A", "T6857C", "-6947G", "-6950A", "-6953C", "-6955G", "-6956G", "-6958T", "-6980G", "-6981A", "-6982C", "-6983A", "-6984C", "-6985A", "-6986A", "-6987A", "-6988A", "-6989T", "-6990C", "-6992A", "-6993A", "-6994T", "-6995G", "-6996A", "-6997C", "-7002A", "C7014T", "C7045T", "C7124A", "T7150C", "G7152A", "A7155G", "T7156C", "A7157T", "T7159A", "-7162G", "C7164A", "A7165T", "G7182T", "C7201T", "A7241G", "T7250A", "A7255G", "C7264A", "T7287C", "G7293A", "C7305G", "G7307-", "T7308-", "G7311C", "G7316A", "G7343A", "T7370G", "A7373G", "G7441A", "A7450G", "G7508C", "G7519A", "A7533G", "C7576T", "C7645T", "A7646C", "G7677A", "A7689G", "A7690T", "G7701T", "A7706C", "G7712A", "T7715G", "T7748C", "G7754T", "A7782G", "G7790A", "A7791G", "T7796A", "A7818G", "G7868A", "A7929G", "T7930C", "T7931C", "G8008A", "A8032G", "C8033A", "C8047T", "C8103T", "A8152G", "A8193G", "A8196G", "T8206C", "G8208A", "C8213T", "-8214A", "T8251C", "A8258C", "G8276A", "C8277T", "A8288G", "A8297G", "C8323A", "G8329A", "C8331T", "A8388G", "A8396C", "G8432A", "A8456T", "T8471C", "C8504T", "A8564C", "T8595G", "A8622C", "A8655C", "G8656A", "A8663G", "A8666C", "C8699A", "G8795C", "A8804G", "G8834A", "G8846A", "C8873T", "A8874G", "G8885A", "A8892C", "C8952A", "C8992G", "C9039T", "C9041T", "C9068T", "C9078T", "A9099G", "T9109A", "G9132A", "A9135G"], "INT": ["V77A"], "RT-p51": ["T35V", "E123D", "I142T", "K297T", "V317A", "I329V", "R358K", "T376A", "K395R", "A435E"], "RT-p66": ["T35V", "E123D", "I142T", "K297T", "V317A", "I329V", "R358K", "T376A", "K395R", "A435E", "R461K", "A466T", "S468T", "H480Q", "E492K"], "gp120": ["T21K", "D34S", "E59G", "K69N", "N71Y", "-106L", "-107K", "N108E", "G124D", "Q127K", "V137I", "K143R", "R150K", "L151V", "I153V", "N157G", "N160S", "S161G", "S162E", "V180I", "D202E", "K212R", "K224R", "D241E", "S246F", "Q247K", "D251E", "K254D", "T255I", "-280R", "-281F", "R287Q", "G307K", "T308S", "R316Q", "K318R", "-319E", "-327N", "-328A", "-329T", "S335P", "-367L", "-368V", "-370D", "-372K", "-373S", "-374N", "-375D", "-376N", "-384D", "T387I", "L424I", "N434S", "N435S", "N436K", "T437N", "G443L", "I463V", "L466I", "V478A", "R480K"], "gp41": ["M7L", "A14T", "S23A", "I24V", "V69L", "K77R", "D113E", "M115L", "S125N", "E129S", "R133M", "I135L", "E137K", "S138A", "A151S", "N160S", "D163S", "S165T", "K172R", "A189T", "H209R", "L244I", "A267V", "K297R", "N298S", "S302N", "L304Y", "I319L", "A325I", "I329V", "I332V"], "nef": ["E15A", "I16V", "E18D", "R49S", "K94Q", "R105Q", "E108D", "E151D", "M168I", "R178G", "K184Q", "Q204K"], "p17": ["E12K", "R30K", "I34L", "E55D", "R58K", "G62Q", "Q90R", "K91E", "V92I"], "p24": ["S14A", "L83T", "A177C", "T178S", "E180D", "L205M"], "p6": ["P11I", "A12E", "H25Y", "P26Q", "D32E", "N47S", "Q52P"], "p7": ["S4G", "R11K", "K26R"], "pro": ["L63T"], "rev": ["E10G", "K14Q", "L18I", "F21L", "F28P", "A54T", "T62D", "P67S", "L73F", "I102V"], "tat": ["T23N", "K29Q", "F32Y", "I39T", "R53G", "Q60P", "T64N", "V67A", "P70S", "I74A"], "vif": ["S46T", "N48H", "I98V", "G101S", "K122N", "H127Y", "K128R", "I129V", "L163-"], "vpr": ["G6E", "S41G", "H45Y", "N48H", "H77Q", "I84T"], "vpu": ["P3S", "K38R", "E60D", "L61A", "S62E", "A63E", "V65S", "E66A", "M67A", "G68L", "-69M", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: V77A; RT-p51: T35V, E123D, I142T, K297T, V317A, I329V, R358K, T376A, K395R, A435E; RT-p66: T35V, E123D, I142T, K297T, V317A, I329V, R358K, T376A, K395R, A435E, R461K, A466T, S468T, H480Q, E492K; gp120: T21K, D34S, E59G, K69N, N71Y, -106L, -107K, N108E, G124D, Q127K, V137I, K143R, R150K, L151V, I153V, N157G, N160S, S161G, S162E, V180I, D202E, K212R, K224R, D241E, S246F, Q247K, D251E, K254D, T255I, -280R, -281F, R287Q, G307K, T308S, R316Q, K318R, -319E, -327N, -328A, -329T, S335P, -367L, -368V, -370D, -372K, -373S, -374N, -375D, -376N, -384D, T387I, L424I, N434S, N435S, N436K, T437N, G443L, I463V, L466I, V478A, R480K; gp41: M7L, A14T, S23A, I24V, V69L, K77R, D113E, M115L, S125N, E129S, R133M, I135L, E137K, S138A, A151S, N160S, D163S, S165T, K172R, A189T, H209R, L244I, A267V, K297R, N298S, S302N, L304Y, I319L, A325I, I329V, I332V; nef: E15A, I16V, E18D, R49S, K94Q, R105Q, E108D, E151D, M168I, R178G, K184Q, Q204K; p17: E12K, R30K, I34L, E55D, R58K, G62Q, Q90R, K91E, V92I; p24: S14A, L83T, A177C, T178S, E180D, L205M; p6: P11I, A12E, H25Y, P26Q, D32E, N47S, Q52P; p7: S4G, R11K, K26R; pro: L63T; rev: E10G, K14Q, L18I, F21L, F28P, A54T, T62D, P67S, L73F, I102V; tat: T23N, K29Q, F32Y, I39T, R53G, Q60P, T64N, V67A, P70S, I74A; vif: S46T, N48H, I98V, G101S, K122N, H127Y, K128R, I129V, L163-; vpr: G6E, S41G, H45Y, N48H, H77Q, I84T; vpu: P3S, K38R, E60D, L61A, S62E, A63E, V65S, E66A, M67A, G68L, -69M, -70E, -71M, -72G"}}}, {"name": "EU581825", "node_attrs": {"div": 0.14417000000000002, "accession": "EU581825", "clade_membership": {"value": "CRF17_BF1"}, "country": {"value": "AR"}, "date": {"value": 2002.0}, "Strain_name": {"value": "AR02_ARG1139"}, "LANL_subtype": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A380G", "A419G", "T467C", "T473C", "C525T", "G557A", "G562C", "C583T", "C603A", "G620A", "A632T", "G641T", "G644A", "T746C", "G762A", "A764G", "T771C", "T777A", "G821A", "G822A", "T861G", "A866G", "T897C", "T902C", "A903T", "C1091T", "T1100G", "C1118T", "G1192A", "A1205G", "G1256A", "T1335C", "G1355A", "G1430A", "C1456A", "G1503A", "A1525G", "A1592G", "G1661A", "G1709A", "G1727A", "-1734G", "-1735A", "G1737C", "A1741C", "C1749-", "C1750-", "C1751-", "C1752-", "A1753-", "T1754-", "A1781T", "A1907G", "G1926A", "C2083T", "C2149A", "T2158C", "A2305G", "G2311A", "A2329G", "A2350G", "G2422A", "T2431A", "A2459G", "A2500G", "T2542G", "C2581T", "T2653C", "G2686A", "A2725G", "A2734G", "A2842G", "C2845A", "A2951G", "A3019G", "C3055T", "A3124G", "G3127A", "A3238G", "C3252T", "G3264A", "T3308C", "T3328C", "G3391A", "A3449C", "A3484G", "C3535T", "G3574A", "A3676C", "G3679A", "A3744G", "G3796A", "T3856C", "G3901A", "C3908G", "G3910A", "G3935A", "G3989A", "A4063C", "C4130A", "C4147T", "G4246A", "G4252A", "G4262A", "C4396A", "G4407A", "T4428C", "A4522G", "G4549A", "T4702C", "G4708A", "G4727T", "A4760C", "C4761T", "C4769T", "C4771A", "G4799A", "T4840C", "G4856A", "G4862A", "G4865T", "A4911G", "C5050G", "A5056G", "G5057A", "A5065G", "A5086G", "G5087T", "C5116A", "C5334A", "T5384C", "C5397T", "G5427A", "C5461A", "T5479C", "C5481A", "A5537G", "G5538A", "C5542A", "A5547T", "G5557A", "A5560C", "T5577A", "T5578C", "C5602G", "T5614C", "T5617G", "T5618A", "C5621T", "A5622G", "C5651T", "C5827G", "C5834T", "A5842G", "T5944C", "T5956C", "G6020C", "T6021A", "A6022G", "G6023T", "G6028A", "G6029A", "A6092G", "G6130A", "C6183G", "T6184A", "A6185G", "A6186T", "C6189A", "A6192G", "T6193C", "-6195A", "T6279G", "A6282C", "C6287A", "G6333A", "T6334C", "A6338G", "-6340A", "T6397C", "G6458A", "A6461G", "A6465C", "G6478A", "A6500G", "C6501T", "C6567T", "G6569A", "A6574G", "A6581G", "A6609C", "A6611G", "T6673C", "A6686-", "G6687-", "-6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701T", "-6702T", "G6716A", "T6721C", "G6754A", "T6794G", "C6800A", "A6814G", "T6835G", "A6839G", "T6857A", "G6871A", "A6880G", "T6895C", "-6947A", "-6950T", "-6953G", "-6955A", "-6956T", "-6958C", "-6962A", "-6963A", "-6964T", "-6965A", "C6991-", "A7001-", "T7003-", "G7004-", "A7100G", "A7107G", "T7141C", "A7148T", "A7149G", "-7162C", "A7163T", "G7256A", "A7297C", "-7309G", "C7317G", "G7322A", "G7390A", "C7393T", "G7517C", "C7544T", "A7553C", "T7561C", "T7579C", "A7620G", "A7626T", "A7630T", "G7631T", "G7633T", "G7640A", "A7641C", "C7651A", "A7688G", "G7729A", "A7782C", "C7801A", "C7843A", "C7932T", "C8009A", "C8026T", "T8067A", "G8079T", "T8100G", "A8118G", "T8121A", "A8132T", "C8145T", "A8170G", "T8174-", "A8175-", "T8176-", "T8177-", "G8178-", "G8179-", "A8180-", "G8181-", "T8182-", "C8183-", "A8184-", "G8185-", "G8186-", "A8187-", "A8188-", "C8189-", "T8190-", "A8191-", "A8192-", "A8193-", "G8194-", "A8195-", "A8196-", "T8197-", "A8198-", "G8199-", "T8200-", "G8201-", "C8202-", "T8203-", "A8204-", "T8205-", "T8206-", "A8207-", "G8208-", "C8209-", "T8210-", "T8211-", "G8212-", "C8213-", "T8215-", "A8216-", "A8217-", "T8218-", "A8219-", "A8228G", "A8258T", "G8274C", "A8294C", "T8321C", "A8330T", "A8342C", "A8364G", "T8371A", "T8374C", "C8386T", "G8398A", "G8429A", "A8435G", "T8440C", "G8441A", "A8456C", "G8458A", "C8489A", "A8531C", "A8584T", "A8597C", "C8607T", "A8608T", "A8666G", "G8759T", "C8768T", "G8799A", "A8812C", "G8848A", "A8870G", "C8904G", "T8914G", "A8922T", "G8935A", "-9005G", "-9006C", "A9027G", "C9028T", "T9046A", "T9073C", "T9108C"], "INT": ["L45V", "V54I", "V72I", "E96D", "P119T", "G163R", "D207E", "R211K", "I218T"], "RT-p51": ["K122E", "I135M", "D250E", "T286A", "T386I", "R390K", "Y405H"], "RT-p66": ["K122E", "I135M", "D250E", "T286A", "T386I", "R390K", "Y405H", "K452Q", "E527N", "K550R"], "gp120": ["V56Q", "V57F", "E59K", "I80V", "-106A", "-107T", "N108D", "-109A", "-110T", "-111T", "-112T", "-113A", "-114S", "-115S", "-116S", "-117L", "-118K", "-119E", "Q142R", "K143T", "H145N", "D159S", "N160I", "S162N", "D202N", "K203E", "K204T", "T216V", "N234-"], "gp41": ["M4L", "V72L", "L81F", "I84L", "K106R", "Q108L", "E109D", "E110Y", "D113T", "N160T", "N166K", "P210F", "F255Y", "R259L", "I266S", "E272G", "L273H", "R277W", "A281V", "Y291-", "W292-", "S293-", "Q294-", "E295-", "L296-", "K297-", "N298-", "S299-", "A300-", "I301-", "S302-", "L303-", "L304-", "N305-", "T306-"], "nef": ["S8G", "I10K", "V11A", "E15V", "R19K", "V33A", "R39K", "E63D", "Y81F", "V85F", "H89F", "L139F", "V153I", "N157T", "S169N", "R188G", "L191R", "I194L", "R198K"], "p17": ["R76T", "A83V", "Q90K", "E99D"], "p2": ["T12N"], "p24": ["V11M", "S14P", "S16T", "A31T", "S44A", "T58S", "R154K"], "p6": ["-19E", "E20Q", "K21T", "I22T", "T23P", "P24-", "H25-", "P26-"], "p7": ["V13I", "K20R"], "pro": ["N37D", "R43K"], "rev": ["S8D", "D9E", "E11V", "F21Y", "A54E", "L60F", "D84E", "Q95L", "T108A"], "tat": ["L3P", "Y35Q", "Q54R", "R57S", "D61N", "S62R", "S68P", "P75S"], "vif": ["F39S", "R41K", "R47S", "A62D", "V85A", "R93S", "I109V", "A155G", "K157R", "K160R", "K167S", "P177H"], "vpr": ["H77N"], "vpu": ["L4E", "A5V", "A15V", "H74D", "P76L", "I79V"]}, "labels": {"aa": "INT: L45V, V54I, V72I, E96D, P119T, G163R, D207E, R211K, I218T; RT-p51: K122E, I135M, D250E, T286A, T386I, R390K, Y405H; RT-p66: K122E, I135M, D250E, T286A, T386I, R390K, Y405H, K452Q, E527N, K550R; gp120: V56Q, V57F, E59K, I80V, -106A, -107T, N108D, -109A, -110T, -111T, -112T, -113A, -114S, -115S, -116S, -117L, -118K, -119E, Q142R, K143T, H145N, D159S, N160I, S162N, D202N, K203E, K204T, T216V, N234-; gp41: M4L, V72L, L81F, I84L, K106R, Q108L, E109D, E110Y, D113T, N160T, N166K, P210F, F255Y, R259L, I266S, E272G, L273H, R277W, A281V, Y291-, W292-, S293-, Q294-, E295-, L296-, K297-, N298-, S299-, A300-, I301-, S302-, L303-, L304-, N305-, T306-; nef: S8G, I10K, V11A, E15V, R19K, V33A, R39K, E63D, Y81F, V85F, H89F, L139F, V153I, N157T, S169N, R188G, L191R, I194L, R198K; p17: R76T, A83V, Q90K, E99D; p2: T12N; p24: V11M, S14P, S16T, A31T, S44A, T58S, R154K; p6: -19E, E20Q, K21T, I22T, T23P, P24-, H25-, P26-; p7: V13I, K20R; pro: N37D, R43K; rev: S8D, D9E, E11V, F21Y, A54E, L60F, D84E, Q95L, T108A; tat: L3P, Y35Q, Q54R, R57S, D61N, S62R, S68P, P75S; vif: F39S, R41K, R47S, A62D, V85A, R93S, I109V, A155G, K157R, K160R, K167S, P177H; vpr: H77N; vpu: L4E, A5V, A15V, H74D, P76L, I79V"}}}]}]}, {"name": "CRF17_BF1_NODE_0000003", "node_attrs": {"div": 0.10360000000000001, "clade_membership": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T992G"]}}, "children": [{"name": "CRF17_BF1_NODE_0000004", "node_attrs": {"div": 0.10891, "clade_membership": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G579A", "G614T", "T771A", "G809A", "G1019A", "G1472A", "G1498A", "A1543G", "A1733G", "A2161G", "G2887A", "A3457G", "A3490G", "T3644A", "G3989A", "G4268A", "G4673A", "T4805C", "A4895G", "C5051T", "G5057A", "A5453T", "C5763T", "-6168A", "-6195G", "A6327G", "A6330G", "G6458A", "A6465C", "A6573G", "A6811C", "T6815G", "A6817T", "G6820A", "T6823C", "T6826A", "C6829T", "-6830C", "-6832C", "C6840A", "-6989G", "-6990A", "-6992A", "-6993C", "-6994A", "-6995G", "-6997A", "-6998T", "-6999C", "-7002A", "C7463A", "T7537C", "C7547A", "G7640A", "A7688G", "G7868A", "C8103T", "A8105G", "T8164C", "A8388G", "A8446G", "T8770A", "A8804G", "G8807A", "T8813C", "T8832C", "A8882G"], "INT": ["V72I", "V165I"], "RT-p66": ["L517I"], "gp120": ["-113N", "-114S", "-119T", "D202N", "K204T", "E240G", "-329K", "N435G"], "gp41": ["N42S", "L82M", "D113N", "A189T", "A267V", "T268A"], "nef": ["E15A", "I16V", "Q35R", "F143Y"], "p17": ["V82I", "E93D", "D102E"], "p24": ["S14T", "M96I"], "p7": ["R11K", "K26R"], "rev": ["N86S", "S106P"], "tat": ["Y26F"], "vif": ["M29I"]}, "labels": {"aa": "INT: V72I, V165I; RT-p66: L517I; gp120: -113N, -114S, -119T, D202N, K204T, E240G, -329K, N435G; gp41: N42S, L82M, D113N, A189T, A267V, T268A; nef: E15A, I16V, Q35R, F143Y; p17: V82I, E93D, D102E; p24: S14T, M96I; p7: R11K, K26R; rev: N86S, S106P; tat: Y26F; vif: M29I"}}, "children": [{"name": "EU581827", "node_attrs": {"div": 0.13809000000000002, "accession": "EU581827", "clade_membership": {"value": "CRF17_BF1"}, "country": {"value": "BO"}, "date": {"value": 2002.0}, "Strain_name": {"value": "BO02_BOL119"}, "LANL_subtype": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G353A", "A380G", "G455A", "T467C", "G495A", "G520C", "C583T", "G608A", "A676G", "A678G", "C679T", "C765T", "A776G", "G869A", "T1063C", "A1115G", "A1145G", "T1166C", "C1292A", "C1295A", "C1350A", "G1394A", "A1418G", "A1449G", "A1476G", "T1501G", "A1532G", "G1588A", "A1642G", "G1661A", "C1670A", "A1673G", "G1691A", "-1734G", "-1735A", "-1736G", "G1737C", "A1772G", "G1845A", "T1864C", "A1879G", "C1913T", "G1972A", "C1985T", "T1986G", "A2400G", "A2407G", "C2467T", "T2597C", "T2608C", "C2615G", "A2716G", "A2734G", "A2738T", "C2739A", "T2806C", "T2854A", "A2937G", "T3049C", "A3136G", "A3192G", "G3264A", "A3293G", "C3303G", "G3340A", "C3445T", "A3451G", "C3496A", "C3499T", "A3611C", "G3664A", "A3744G", "G3755A", "C3756A", "G3787A", "C3922T", "T3943C", "C4079T", "A4093G", "C4130A", "C4132T", "T4177C", "G4407A", "A4492C", "G4495A", "G4582A", "G4677A", "T4702C", "T4712C", "A4760C", "C4769T", "G4864T", "G4888A", "A4970G", "T5028C", "A5046G", "A5054C", "C5102T", "G5212A", "T5245C", "G5269A", "T5281C", "A5431G", "T5457C", "T5482C", "G5484C", "A5556G", "G5557A", "A5574G", "T5576A", "C5579T", "C5584T", "C5602T", "T5614C", "G5620C", "A5659T", "A5712G", "C5727T", "A5739G", "A5748T", "C5884T", "A6008G", "G6029-", "A6030-", "A6031-", "G6050A", "A6065G", "T6100C", "-6167A", "A6176-", "A6177-", "T6178-", "G6179-", "C6180-", "C6181-", "A6182G", "T6184C", "C6187T", "C6189G", "A6192C", "A6194C", "T6196A", "C6198G", "T6199C", "G6204C", "A6206C", "C6208G", "C6209A", "T6210C", "A6212G", "G6214A", "G6215A", "A6216T", "A6217G", "A6229G", "C6233A", "G6277T", "C6287A", "A6324G", "T6325C", "A6329G", "T6331C", "G6336A", "-6340C", "A6371C", "A6461G", "A6489T", "C6618T", "C6619T", "G6649A", "-6688T", "-6689A", "-6690T", "-6691A", "-6692C", "-6693A", "G6705C", "C6713A", "A6776G", "C6777A", "C6779A", "A6788C", "C6800A", "A6801G", "A6825T", "-6831T", "A6848C", "T6876C", "C6938T", "-6996T", "-7000T", "A7005G", "C7025A", "G7026A", "C7064A", "C7096A", "A7113G", "A7126T", "A7149G", "T7153C", "T7156C", "A7158-", "T7159-", "A7160-", "A7161-", "A7163-", "A7190G", "A7197G", "G7244C", "T7250A", "A7268C", "A7269C", "G7276A", "G7291A", "G7307-", "T7308-", "G7311C", "A7313T", "G7315A", "G7316A", "G7319A", "G7322A", "A7376G", "G7426A", "G7441A", "G7459A", "A7532G", "A7533G", "A7553C", "T7561A", "A7570T", "T7575G", "A7629C", "G7630T", "G7633C", "T7642C", "G7658C", "T7685A", "A7689G", "G7712T", "A7713T", "C7723T", "C7755A", "G7790A", "A7791G", "T7796A", "G7807A", "G7831A", "T7864C", "T7879C", "A7921T", "T7930G", "C7939T", "C7969A", "G7992A", "A8014T", "A8023G", "T8035G", "A8036T", "C8120T", "G8144A", "C8145T", "A8170C", "A8188G", "A8241G", "G8242A", "T8257A", "C8277T", "C8323A", "T8337A", "G8349A", "G8436T", "T8440C", "G8441A", "G8462A", "T8471C", "C8489A", "C8491A", "T8505G", "A8531C", "A8537T", "C8552T", "T8595G", "C8609T", "A8636T", "T8740C", "A8746T", "T8747C", "C8809A", "G8875A", "A8886C", "A8893G", "G8894A", "C8900T", "G8942T", "-9009A", "G9033-", "C9041T", "A9082G", "A9099G", "T9108C"], "INT": ["P119T", "R211K"], "RT-p51": ["K102R", "Q174E", "T215Y", "K281R", "K366R", "R390K", "T400A", "T403R"], "RT-p66": ["K102R", "Q174E", "T215Y", "K281R", "K366R", "R390K", "T400A", "T403R", "I506L", "K550R", "A554N"], "gp120": ["N52D", "E59-", "D66N", "N71D", "N108-", "-111N", "-112A", "-115S", "-116S", "-117T", "-118P", "-120E", "-121M", "Q127K", "Q141H", "H145N", "N157S", "N158S", "D159G", "N160S", "S161N", "I173L", "K203E", "K212M", "T255I", "-280H", "-281I", "-282A", "G284-", "T308E", "Q309K", "K312Q", "K332Q", "-367V", "-368S", "-370G", "T385-", "R391K", "N414K", "N420S", "N433T", "N434T", "N446D", "K448R", "E464Q", "L466I", "K472P"], "gp41": ["V2-", "G3-", "M4-", "A5-", "V7L", "T25A", "K77G", "I84L", "L91R", "E109A", "E110D", "E119Q", "S128T", "E129G", "E137L", "A151E", "D163S", "S165T", "M176I", "L206F", "H209Q", "P210S", "G230D", "L237F", "I245F", "L273F", "A281I", "E313G", "A325V", "L345Q"], "nef": ["G3S", "A32S", "V33A", "A50D", "L55V", "E63D", "E65D", "E98D", "I133T", "Y135F", "A156D", "R178K", "K182Q", "K184R"], "p1": ["K4R"], "p17": ["A54T", "G62A", "A83V", "K114R", "T115V"], "p2": ["-9G"], "p24": ["H12Y", "L111P", "D187E", "P207T"], "p7": ["S4G", "I12S", "R41K"], "pro": ["G16E", "P39S", "L63C"], "rev": ["K14R", "K20R", "F21I", "L22F", "F28V", "P31S", "S56C", "I59V", "Y63V", "T91I", "S99N", "T108P", "T114A"], "tat": ["T19A", "K29Q", "W36R", "G61S", "V67D", "S68F", "P70S", "I74S", "A77V", "S87*"], "vif": ["V31I", "F39S", "R93M", "G101D", "I154V"], "vpu": ["I18L", "R47S"]}, "labels": {"aa": "INT: P119T, R211K; RT-p51: K102R, Q174E, T215Y, K281R, K366R, R390K, T400A, T403R; RT-p66: K102R, Q174E, T215Y, K281R, K366R, R390K, T400A, T403R, I506L, K550R, A554N; gp120: N52D, E59-, D66N, N71D, N108-, -111N, -112A, -115S, -116S, -117T, -118P, -120E, -121M, Q127K, Q141H, H145N, N157S, N158S, D159G, N160S, S161N, I173L, K203E, K212M, T255I, -280H, -281I, -282A, G284-, T308E, Q309K, K312Q, K332Q, -367V, -368S, -370G, T385-, R391K, N414K, N420S, N433T, N434T, N446D, K448R, E464Q, L466I, K472P; gp41: V2-, G3-, M4-, A5-, V7L, T25A, K77G, I84L, L91R, E109A, E110D, E119Q, S128T, E129G, E137L, A151E, D163S, S165T, M176I, L206F, H209Q, P210S, G230D, L237F, I245F, L273F, A281I, E313G, A325V, L345Q; nef: G3S, A32S, V33A, A50D, L55V, E63D, E65D, E98D, I133T, Y135F, A156D, R178K, K182Q, K184R; p1: K4R; p17: A54T, G62A, A83V, K114R, T115V; p2: -9G; p24: H12Y, L111P, D187E, P207T; p7: S4G, I12S, R41K; pro: G16E, P39S, L63C; rev: K14R, K20R, F21I, L22F, F28V, P31S, S56C, I59V, Y63V, T91I, S99N, T108P, T114A; tat: T19A, K29Q, W36R, G61S, V67D, S68F, P70S, I74S, A77V, S87*; vif: V31I, F39S, R93M, G101D, I154V; vpu: I18L, R47S"}}}, {"name": "AY037281", "node_attrs": {"div": 0.13765, "accession": "AY037281", "clade_membership": {"value": "CRF17_BF1"}, "country": {"value": "AR"}, "date": {"value": 1999.0}, "Strain_name": {"value": "ARMA038"}, "LANL_subtype": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A399C", "A412G", "T473C", "A500C", "A512G", "A659G", "C669A", "A670G", "G689A", "A699-", "A700-", "G702A", "-704A", "-705C", "-706A", "-707C", "-708A", "-709G", "-710C", "-711A", "-712A", "-713G", "-714C", "-715G", "T774A", "T789C", "C872T", "T875C", "A998G", "G1031A", "A1050G", "C1060A", "G1192A", "A1208G", "A1263T", "C1316T", "T1358A", "A1359C", "C1360A", "A1364G", "G1450A", "A1452C", "A1464C", "A1492C", "T1501A", "G1713T", "C1714T", "T1741C", "A1742G", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "T1754G", "A1768C", "A1832G", "C1833A", "A1927G", "A1979G", "C1981T", "C2044T", "G2074A", "A2075C", "T2087C", "A2198G", "C2199T", "G2311A", "T2315C", "T2356C", "A2416C", "G2518A", "T2542A", "A2623G", "A2627C", "T2689C", "G2710A", "G2727A", "T2737A", "A2818G", "G2828A", "G2830A", "A2842G", "A2923G", "G2969A", "A2972G", "C3100T", "G3142A", "A3221G", "C3275T", "A3280G", "A3334G", "A3430C", "C3475T", "G3529A", "C3535T", "T3541C", "C3542A", "T3550C", "G3574A", "A3637G", "A3817G", "G3935A", "T3970C", "C4140G", "G4145A", "C4146A", "G4262A", "A4264G", "C4321T", "T4450C", "A4686C", "G4689A", "T4701G", "A4785G", "A4806C", "T4832A", "G4859A", "C4965A", "T5027C", "G5290A", "A5372C", "C5383A", "C5461G", "C5490T", "T5492C", "T5512A", "C5513A", "G5548C", "G5561A", "A5564C", "A5566C", "T5614G", "A5631C", "G5653A", "A5704T", "T5788A", "A5790C", "G5800A", "G5858A", "G5860A", "A5865G", "A5868C", "C5922T", "C5949G", "T5956G", "A6022G", "G6023C", "T6024C", "T6025G", "A6061C", "A6092G", "C6165A", "-6167G", "-6170G", "-6171T", "-6172C", "C6180T", "A6185G", "A6186C", "G6201A", "C6221G", "A6268G", "G6280A", "A6326G", "G6333A", "A6335G", "T6337C", "-6340T", "C6343T", "C6424T", "A6448G", "G6490C", "C6499T", "A6500G", "C6501T", "A6505G", "C6593A", "T6643C", "-6697A", "-6698C", "-6699A", "-6700G", "-6701T", "-6702T", "A6715T", "A6734G", "T6735A", "G6773A", "G6774A", "A6807G", "A6819G", "C6822T", "A6825C", "-6831C", "G6935A", "G6936A", "-6947G", "-6948A", "-6949C", "-6950T", "-6951C", "-6952C", "-6953C", "-6954G", "-6955G", "-6956G", "-6957A", "-6958T", "-6959A", "-6960A", "-6961T", "-6996A", "-7000C", "C7014T", "T7047G", "G7060A", "G7065A", "A7100G", "C7101T", "C7102T", "A7148C", "T7150G", "A7151G", "T7153A", "A7158G", "A7160G", "A7161G", "-7162A", "A7163C", "G7168A", "C7170T", "G7182A", "T7228C", "-7309G", "C7328A", "T7433C", "A7540G", "G7552A", "A7589G", "T7703C", "A7710G", "C7762A", "A7764C", "A7847G", "A7859G", "T7913G", "A7929G", "T7930C", "T7931C", "G7995A", "C8005A", "G8006A", "G8008A", "C8009A", "A8014G", "A8029G", "G8030C", "A8051C", "A8069T", "T8097G", "G8107A", "T8138A", "A8151G", "A8152G", "C8167T", "A8288G", "A8364-", "G8365-", "T8366-", "A8367-", "G8368-", "T8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "T8375-", "A8456G", "A8469G", "A8573G", "G8588A", "T8595C", "C8688A", "C8789A", "G8799A", "G8822A", "G8857A", "C8904A", "C8913T", "G8915T", "A8922G", "G8942A", "G8955A", "-9005G", "-9006G", "G9012C", "C9013G", "G9014-", "T9025G", "C9028A"], "INT": ["V54I", "T122S", "A124N", "G163R"], "RT-p51": ["T35V", "I178L", "R211K", "F214L", "V245I", "V292I", "I293V", "T376A"], "RT-p66": ["T35V", "I178L", "R211K", "F214L", "V245I", "V292I", "I293V", "T376A", "Q483K"], "gp120": ["A2T", "E4G", "N5T", "T23I", "A32G", "D34E", "I56M", "V57P", "K69N", "I80V", "T104N", "-105D", "-106V", "-109V", "-110T", "-111A", "-112T", "-115T", "-116Q", "-117N", "-118S", "-120L", "-121K", "P123E", "N158G", "D159S", "S161G", "K212N", "T216V", "Q247K", "-282Q", "-283L", "D294E", "G307K", "R316Q", "K318R", "P341L", "G361K", "T366S", "-367R", "-368D", "-370D", "-372E", "-373S", "-374N", "-384D", "T387I", "M398R", "R404Q", "T416V", "N432Q", "N433G", "N436S", "T437G", "T439I", "G443E"], "gp41": ["L9I", "T96A", "E136G", "D153E", "K154T", "I182V", "I186V", "L204V", "H209R", "R231K", "V235I", "A243P", "S256C", "L265W", "W279R", "K283R", "I329V", "L340F"], "nef": ["S8-", "S9-", "I10-", "V11-", "I43V", "R49S", "V85L", "H116N", "D149E", "V153I", "G172E", "R188S", "L191F", "I194V", "D205N"], "p17": ["K26R", "E55D", "Q112R", "K122-"], "p2": ["-9N", "T10P", "M14L"], "p24": ["L15I", "T107A", "T110N", "R154K", "T178S", "T210Q"], "p6": ["A12L", "Q21T", "H25Q", "Q30P", "Q52K"], "p7": ["Q9P", "I12N"], "pro": ["T12E", "N61D", "I93L"], "rev": ["E11D", "V16I", "F28P", "R53N", "A54K", "S56G", "S61A", "E68A", "Q74L", "E87K", "V97E", "I102V", "P107S"], "tat": ["L3I", "K29E", "I39T", "S46N", "A58P", "S62N", "Q63P", "T64P", "I74A"], "vif": ["K34Q", "A35T", "F39V", "T67A", "T74P", "H127N"], "vpr": ["A93D"], "vpu": ["P3A", "Q5E", "A16T", "I33L", "L61I", "V65M"]}, "labels": {"aa": "INT: V54I, T122S, A124N, G163R; RT-p51: T35V, I178L, R211K, F214L, V245I, V292I, I293V, T376A; RT-p66: T35V, I178L, R211K, F214L, V245I, V292I, I293V, T376A, Q483K; gp120: A2T, E4G, N5T, T23I, A32G, D34E, I56M, V57P, K69N, I80V, T104N, -105D, -106V, -109V, -110T, -111A, -112T, -115T, -116Q, -117N, -118S, -120L, -121K, P123E, N158G, D159S, S161G, K212N, T216V, Q247K, -282Q, -283L, D294E, G307K, R316Q, K318R, P341L, G361K, T366S, -367R, -368D, -370D, -372E, -373S, -374N, -384D, T387I, M398R, R404Q, T416V, N432Q, N433G, N436S, T437G, T439I, G443E; gp41: L9I, T96A, E136G, D153E, K154T, I182V, I186V, L204V, H209R, R231K, V235I, A243P, S256C, L265W, W279R, K283R, I329V, L340F; nef: S8-, S9-, I10-, V11-, I43V, R49S, V85L, H116N, D149E, V153I, G172E, R188S, L191F, I194V, D205N; p17: K26R, E55D, Q112R, K122-; p2: -9N, T10P, M14L; p24: L15I, T107A, T110N, R154K, T178S, T210Q; p6: A12L, Q21T, H25Q, Q30P, Q52K; p7: Q9P, I12N; pro: T12E, N61D, I93L; rev: E11D, V16I, F28P, R53N, A54K, S56G, S61A, E68A, Q74L, E87K, V97E, I102V, P107S; tat: L3I, K29E, I39T, S46N, A58P, S62N, Q63P, T64P, I74A; vif: K34Q, A35T, F39V, T67A, T74P, H127N; vpr: A93D; vpu: P3A, Q5E, A16T, I33L, L61I, V65M"}}}]}, {"name": "CRF17_BF1_NODE_0000005", "node_attrs": {"div": 0.11033000000000001, "clade_membership": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T426C", "A571T", "C603A", "T897C", "G1256A", "-1734G", "-1735A", "-1736A", "G1737C", "C1903T", "C2533T", "A2602G", "C2941T", "G3016A", "G3211A", "C3232T", "C3535T", "C3712T", "A3770G", "G3787A", "G3869A", "G4036A", "A4063G", "C4147T", "G4252A", "A4695G", "C4769A", "C4898T", "C5237T", "C5333T", "G5370A", "A5446G", "C5461A", "G5620C", "A5739T", "T6193C", "T6199A", "C6202T", "A6203G", "G6333T", "-6697A", "-6698C", "-6699A", "-6700G", "-6701T", "-6702T", "A6801G", "-6831C", "C7012T", "T7015C", "A7032G", "A7037G", "G7152A", "A7161G", "A7366G", "G7428A", "T7433C", "G7631C", "T7642C", "G7657A", "A7690T", "A7936G", "G7942A", "T8007C", "A8051C", "T8215C", "A8241G", "A8739G", "A8870T", "C8913T", "G8942A", "A8954G", "G8955A", "A9095G"], "INT": ["V32I"], "RT-p66": ["I559V"], "gp120": ["N160T", "-282Q", "-283L", "-328A", "K393R", "I395V"], "gp41": ["M54L", "E110Q", "E129N", "P210S", "V235A", "E313G"], "nef": ["I133V"], "p17": ["Y79F", "Q90K"], "p2": ["-11A"], "rev": ["K30E", "E68A"], "tat": ["R24G", "W36R"], "vif": ["R37G", "D61E"], "vpr": ["H45Y", "V89I"], "vpu": ["P3S"]}, "labels": {"aa": "INT: V32I; RT-p66: I559V; gp120: N160T, -282Q, -283L, -328A, K393R, I395V; gp41: M54L, E110Q, E129N, P210S, V235A, E313G; nef: I133V; p17: Y79F, Q90K; p2: -11A; rev: K30E, E68A; tat: R24G, W36R; vif: R37G, D61E; vpr: H45Y, V89I; vpu: P3S"}}, "children": [{"name": "EU581823", "node_attrs": {"div": 0.14528000000000002, "accession": "EU581823", "clade_membership": {"value": "CRF17_BF1"}, "country": {"value": "PY"}, "date": {"value": 2002.0}, "Strain_name": {"value": "PY02_PSP0096"}, "LANL_subtype": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G369C", "A380G", "G455A", "T486A", "C583T", "A606G", "A607G", "G609A", "G615A", "A665G", "A678G", "C679T", "T734C", "T749G", "C767T", "T773C", "G810A", "G911A", "T988C", "C1013T", "G1019A", "A1089G", "A1157G", "C1175A", "C1292A", "C1350A", "A1361G", "A1397G", "G1404A", "T1444C", "A1455G", "T1457-", "-1460C", "G1495A", "T1501C", "A1525G", "A1529T", "C1541T", "C1556A", "G1588A", "G1709A", "C1730T", "G1773A", "A1774G", "G1780A", "A1781T", "C1787T", "C1826T", "G1848A", "A1857G", "G1926A", "T2013C", "A2023G", "T2101A", "A2293G", "G2311A", "A2314G", "A2407G", "T2412C", "T2440C", "T2499G", "A2645G", "A2699G", "C2756T", "T2774C", "T2788C", "G2833A", "C2863T", "T2890C", "G2947A", "G3085A", "G3127A", "G3162A", "A3193G", "G3250A", "A3268G", "T3349C", "A3450T", "A3703T", "T3751C", "A3766G", "G3796A", "G3802A", "G3805A", "G3901A", "G3910A", "G3916A", "G3952A", "C4025T", "A4107G", "C4141T", "G4145A", "G4148A", "C4207T", "G4262A", "G4263A", "A4264T", "A4303G", "A4354G", "T4428C", "G4573A", "G4622A", "A4644C", "C4645A", "C4667T", "C4674T", "G4677A", "T4706C", "G4737A", "C4754T", "A4782G", "G4864A", "T4932A", "C4954T", "A4956T", "A4993C", "A5036G", "A5159G", "C5227T", "A5230G", "T5239C", "A5246G", "G5257A", "G5382A", "C5383A", "C5412T", "C5425A", "G5483C", "A5491G", "C5495A", "T5577C", "C5584T", "G5673A", "A5689G", "G5729A", "A5738C", "G5741A", "A5742G", "G5800A", "G5948T", "G5962A", "T5964C", "A6022G", "A6092G", "T6134A", "T6169-", "A6188C", "-6195A", "T6196C", "C6198A", "G6201C", "G6204A", "G6220C", "C6221T", "C6228T", "A6234T", "T6242A", "G6267C", "G6274A", "C6275A", "T6279A", "G6303A", "A6311T", "A6320C", "A6329G", "A6330G", "T6331C", "T6333C", "G6339T", "-6340A", "C6347A", "A6354G", "T6355A", "A6367T", "G6392A", "T6393C", "A6394C", "C6412T", "C6424T", "A6438T", "G6442A", "A6489G", "G6490T", "T6541C", "G6547T", "A6611G", "C6612T", "G6649T", "A6715G", "G6716T", "C6717A", "A6718C", "T6722C", "A6751G", "G6767A", "T6794A", "A6811C", "T6815G", "A6817T", "G6820A", "C6822T", "T6823C", "A6825T", "T6826A", "C6829T", "-6830C", "-6832A", "T6835G", "A6839G", "C6862T", "T6863G", "C6875A", "T6888C", "G6889A", "G6935A", "G6936A", "-6947G", "-6948A", "-6949C", "-6950A", "-6951C", "-6952A", "-6953G", "-6954T", "-6955A", "-6956T", "-6957T", "-6958C", "-6959G", "-6960A", "-6961T", "-6962A", "-6963A", "-6964C", "-6965A", "-6966G", "-6967T", "C6991-", "A7001-", "T7003-", "G7004-", "A7005-", "C7006-", "C7020A", "C7089A", "A7100G", "A7113G", "C7124A", "T7144A", "T7150G", "-7162G", "C7174T", "A7216G", "-7309A", "A7348C", "A7375G", "A7376G", "T7462G", "A7477G", "G7519A", "A7527T", "A7553C", "T7561C", "T7622A", "A7641G", "A7655G", "G7660A", "A7710G", "A7722T", "C7742A", "C7755A", "G7790A", "A7791G", "T7796A", "T7913G", "C7926T", "A7943C", "C7951A", "G7991A", "A7998G", "A8002C", "G8006A", "A8018C", "G8079A", "C8080A", "G8087A", "A8163G", "A8170C", "A8204G", "C8213T", "T8239G", "C8291T", "C8296T", "C8323A", "G8365A", "T8369G", "G8373A", "T8374G", "C8386A", "T8387G", "A8388G", "C8410A", "A8413G", "A8456C", "C8504T", "G8561A", "A8636T", "T8747C", "G8759T", "A8777C", "G8817A", "G8822C", "A8827C", "A8837G", "A8852G", "C8853T", "G8861A", "A8869G", "A8874G", "C8904A", "G8905T", "G8915T", "A8922C", "G8929A", "G8935A", "C8952A", "-9005G", "-9006G", "G9007A", "G9012C", "C9013G", "G9016A", "C9018A", "A9019G", "G9020A", "C9023G", "G9024C", "T9025G", "G9026T", "C9028A", "T9029A", "G9030T", "T9108C"], "INT": ["K111R", "A124T", "A125T", "G163N", "I218T", "G283S"], "RT-p51": ["V106A", "I135R", "M184V", "I202V", "H221Y", "F227L", "R356K"], "RT-p66": ["V106A", "I135R", "M184V", "I202V", "H221Y", "F227L", "R356K", "K452I"], "gp120": ["A32S", "V37A", "I56M", "I80V", "L94I", "-109A", "-110T", "-111N", "-112P", "-113N", "-114N", "-115K", "-116T", "-117D", "-118T", "-119L", "-120K", "-121E", "E122D", "P123S", "A125V", "Q127L", "S130T", "R138T", "Q141K", "L142Q", "R150K", "I153L", "I156L", "D159N", "S162I", "L165I", "N167R", "V180T", "Y195F", "K212S", "L231F", "T253V", "Q265H", "A288Y", "Y290H", "V305I", "L314I", "S337A", "P341I", "M345T", "G361K", "-367V", "-368F", "-370S", "T385-", "P389Q", "A412E", "T416A", "N420S", "L424I", "N432K", "N436R"], "gp41": ["I24M", "T25A", "H53Q", "Y75F", "I84L", "S107T", "D113G", "M118V", "E136G", "N140I", "Q147K", "A151E", "D163S", "S165T", "L204V", "T208I", "G230S", "D232G", "R233S", "A235T", "N239H", "R259Q", "D262N", "N287S", "I301V", "L304F", "L330F"], "nef": ["S8N", "S9R", "V11S", "I16V", "A23D", "E24G", "E38D", "R49S", "V85L", "E98D", "L139F", "G159R", "E160D", "N162T", "H171Y", "M173I", "E176G", "R178G", "R188I", "L191F", "I194L", "R196K", "R198K", "Q204K"], "p17": ["E12Q", "L51I", "A83V", "K91G", "V92I", "V94I", "D102E", "T115V"], "p2": ["V7A", "-9S", "T12V", "V13-"], "p24": ["V27I", "V86A", "M96I", "S120G", "D187E", "P207T", "G225S"], "p6": ["D32S", "G34D"], "p7": ["R10K", "I12T", "K20R", "E21D", "R41K"], "pro": ["G17E", "K20R", "R43K", "I72T"], "rev": ["F21S", "E32T", "R48K", "I52L", "R53H", "E57A", "L78I", "R80K", "T108P"], "tat": ["L3I", "Q17K", "R36S", "I39V", "T40K", "P70S", "P73-", "I74-", "P75S", "Q76I", "A77P", "P81Q"], "vif": ["T20Q", "H30Y", "V31I", "V51I", "I66V", "R93K", "S116T", "A123V", "I124L", "Q136P"], "vpr": ["T19A", "N48D", "A93N"], "vpu": ["I28V", "R41K", "E44A", "R45K", "V65M"]}, "labels": {"aa": "INT: K111R, A124T, A125T, G163N, I218T, G283S; RT-p51: V106A, I135R, M184V, I202V, H221Y, F227L, R356K; RT-p66: V106A, I135R, M184V, I202V, H221Y, F227L, R356K, K452I; gp120: A32S, V37A, I56M, I80V, L94I, -109A, -110T, -111N, -112P, -113N, -114N, -115K, -116T, -117D, -118T, -119L, -120K, -121E, E122D, P123S, A125V, Q127L, S130T, R138T, Q141K, L142Q, R150K, I153L, I156L, D159N, S162I, L165I, N167R, V180T, Y195F, K212S, L231F, T253V, Q265H, A288Y, Y290H, V305I, L314I, S337A, P341I, M345T, G361K, -367V, -368F, -370S, T385-, P389Q, A412E, T416A, N420S, L424I, N432K, N436R; gp41: I24M, T25A, H53Q, Y75F, I84L, S107T, D113G, M118V, E136G, N140I, Q147K, A151E, D163S, S165T, L204V, T208I, G230S, D232G, R233S, A235T, N239H, R259Q, D262N, N287S, I301V, L304F, L330F; nef: S8N, S9R, V11S, I16V, A23D, E24G, E38D, R49S, V85L, E98D, L139F, G159R, E160D, N162T, H171Y, M173I, E176G, R178G, R188I, L191F, I194L, R196K, R198K, Q204K; p17: E12Q, L51I, A83V, K91G, V92I, V94I, D102E, T115V; p2: V7A, -9S, T12V, V13-; p24: V27I, V86A, M96I, S120G, D187E, P207T, G225S; p6: D32S, G34D; p7: R10K, I12T, K20R, E21D, R41K; pro: G17E, K20R, R43K, I72T; rev: F21S, E32T, R48K, I52L, R53H, E57A, L78I, R80K, T108P; tat: L3I, Q17K, R36S, I39V, T40K, P70S, P73-, I74-, P75S, Q76I, A77P, P81Q; vif: T20Q, H30Y, V31I, V51I, I66V, R93K, S116T, A123V, I124L, Q136P; vpr: T19A, N48D, A93N; vpu: I28V, R41K, E44A, R45K, V65M"}}}, {"name": "EU581824", "node_attrs": {"div": 0.13957, "accession": "EU581824", "clade_membership": {"value": "CRF17_BF1"}, "country": {"value": "PY"}, "date": {"value": 2002.0}, "Strain_name": {"value": "PY02_PSP0073"}, "LANL_subtype": {"value": "CRF17_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "A533C", "T534G", "A581G", "T610A", "G614T", "G641C", "G689A", "G762T", "T763C", "C765T", "A842T", "A887G", "T978A", "T979C", "T1063C", "C1136T", "A1139G", "A1328G", "G1346A", "A1359T", "A1442C", "A1452G", "A1464C", "A1492C", "G1498A", "C1514T", "C1610A", "C1670A", "A1673G", "C1724T", "-1746C", "-1747C", "-1748C", "C1749T", "C1750A", "C1751T", "A1753C", "T1754G", "C1755A", "C1756A", "T1783A", "T1796C", "A1839G", "G1942A", "A1979G", "A2026G", "T2086C", "C2420T", "A2593G", "A2613G", "A2623G", "T2659C", "T2735C", "T2829A", "A2881C", "G2921A", "A2951G", "G2995A", "A3097C", "A3221G", "C3222T", "A3241C", "A3286G", "G3307A", "A3402G", "A3449G", "C3475T", "G3477A", "A3487G", "C3600T", "A3642G", "A3676T", "A3684G", "C3763A", "A3808C", "G3866A", "T3889C", "A3931G", "G3935A", "A3949C", "T4005C", "C4025A", "T4085C", "C4129T", "C4149T", "T4177A", "G4268A", "T4388G", "T4606C", "G4673A", "G4689A", "T4702C", "A4765G", "A4775T", "A4785G", "C4786T", "A4847G", "G4888A", "A4911C", "T4932G", "T4967C", "A5021G", "A5046G", "A5065G", "G5069A", "G5121A", "G5140A", "T5182C", "A5282C", "A5293G", "A5302G", "T5403G", "A5421G", "A5453T", "T5482C", "G5484A", "C5551A", "C5563A", "T5616C", "T5626G", "C5651T", "A5656T", "G5711A", "A5718G", "A5845G", "A5856G", "G5860A", "C5916A", "T5920C", "T5944G", "T6010G", "G6029C", "C6087A", "A6119C", "C6145T", "T6160C", "C6165G", "-6167A", "-6168A", "-6170T", "-6171T", "-6172C", "-6173A", "-6174C", "-6175C", "G6179A", "C6180A", "A6185G", "A6186G", "C6187A", "A6188G", "C6189G", "C6190G", "A6191G", "-6195C", "A6197G", "C6198G", "G6201A", "G6214A", "T6271C", "A6320G", "C6322T", "T6325C", "A6327G", "T6337C", "-6340C", "T6341A", "C6343T", "G6391A", "T6397C", "A6456G", "T6457G", "A6461G", "A6465G", "A6573G", "T6577G", "C6618T", "G6644A", "A6669C", "A6712G", "G6773A", "C6779A", "A6780G", "A6788G", "A6790C", "-6809G", "G6810A", "A6814G", "A6819G", "G6821T", "-6830A", "-6832T", "-6833A", "-6834A", "A6836G", "A6837C", "T6838A", "A6849G", "T6876C", "T6946G", "-6980G", "-6981A", "-6982A", "-6983T", "-6984C", "-6985C", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "-6992A", "-6993C", "-6994T", "-7002A", "C7014T", "A7155G", "T7156A", "A7157G", "A7160G", "-7162T", "A7163G", "C7164G", "A7165T", "A7210G", "A7234G", "G7307-", "T7308-", "G7311C", "A7313C", "G7315A", "G7440A", "A7522G", "G7549A", "A7570C", "C7590A", "A7626T", "G7628C", "G7630T", "A7668G", "G7759A", "A7818G", "A7820T", "A8029G", "G8085T", "C8106A", "A8196G", "T8218C", "A8236G", "T8239A", "C8320A", "T8321C", "C8323T", "A8326G", "C8336A", "T8337C", "T8348G", "T8384C", "G8385A", "G8402A", "G8465A", "C8489A", "C8491A", "T8492A", "A8494C", "T8505G", "T8546C", "A8573G", "G8590C", "T8595G", "G8624T", "A8657G", "C8702T", "G8732A", "A8746T", "G8822A", "C8825T", "T8864G", "G8875A", "A8887G", "A8892G", "G8945A", "-9009A", "C9068T", "G9132A"], "INT": ["E11D", "V31I", "V54I", "V77A", "L84I", "A125V", "V165I", "S205A"], "RT-p51": ["K173R", "F214L", "V245E", "V276I", "T286A", "Q334H", "T376V", "E436G"], "RT-p66": ["K173R", "F214L", "V245E", "V276I", "T286A", "Q334H", "T376V", "E436G", "K452E", "R461K", "A502V", "E516G", "K527N", "K530R"], "gp120": ["N1S", "T21N", "N52K", "E59Q", "T78K", "K89Q", "T104S", "-105N", "-106L", "-107K", "N108E", "I156V", "D159E", "S161I", "N201R", "K203E", "K204R", "E240G", "D241E", "T255I", "V264I", "N272T", "G307R", "Q309R", "K312D", "-319E", "K322R", "H324Y", "-327N", "-329T", "K332R", "N364K", "D365E", "T366-", "N369-", "T371-", "-377S", "-378N", "-379D", "-380T", "-381N", "-384D", "T387I", "N435R", "N436T", "T437V"], "gp41": ["V2A", "G3L", "M4A", "A5-", "R46K", "T96N", "Q108L", "E109H", "M118I", "K122R", "K172R", "I173L", "R261I", "T268K", "N298S", "L345T"], "nef": ["E15T", "M20I", "A50E", "N51T", "L55V", "G83A", "K94N", "Y135F", "D174E", "E176D", "R178K", "K182R", "K184E", "F202Y", "Y203Q", "Q204D"], "p17": ["S67A", "V92E", "E93D"], "p2": ["Q6H", "T10S", "M14L"], "p24": ["V11S", "H12Y", "L83T", "L111P", "T210S"], "p6": ["H25Y", "K31T", "D32K", "E33Q", "G34E", "L35Q", "Y36K"], "p7": ["Q9P", "R11K", "D48E"], "pro": ["K14R", "N61D"], "rev": ["E32K", "S61G", "E79D", "N86K"], "tat": ["D9E", "Y26F", "P59T", "Q63K", "Q76R", "R78Q"], "vif": ["V7A", "M29I", "A35T", "F39S", "E60G", "K63N", "T67V", "I87M", "G101D", "I109L", "S116A", "I154V", "K160R", "E179K", "G185E"], "vpr": ["G6E", "I60L", "I63M"], "vpu": ["L7V", "A15V", "I17L", "R35K", "E44D", "N80D"]}, "labels": {"aa": "INT: E11D, V31I, V54I, V77A, L84I, A125V, V165I, S205A; RT-p51: K173R, F214L, V245E, V276I, T286A, Q334H, T376V, E436G; RT-p66: K173R, F214L, V245E, V276I, T286A, Q334H, T376V, E436G, K452E, R461K, A502V, E516G, K527N, K530R; gp120: N1S, T21N, N52K, E59Q, T78K, K89Q, T104S, -105N, -106L, -107K, N108E, I156V, D159E, S161I, N201R, K203E, K204R, E240G, D241E, T255I, V264I, N272T, G307R, Q309R, K312D, -319E, K322R, H324Y, -327N, -329T, K332R, N364K, D365E, T366-, N369-, T371-, -377S, -378N, -379D, -380T, -381N, -384D, T387I, N435R, N436T, T437V; gp41: V2A, G3L, M4A, A5-, R46K, T96N, Q108L, E109H, M118I, K122R, K172R, I173L, R261I, T268K, N298S, L345T; nef: E15T, M20I, A50E, N51T, L55V, G83A, K94N, Y135F, D174E, E176D, R178K, K182R, K184E, F202Y, Y203Q, Q204D; p17: S67A, V92E, E93D; p2: Q6H, T10S, M14L; p24: V11S, H12Y, L83T, L111P, T210S; p6: H25Y, K31T, D32K, E33Q, G34E, L35Q, Y36K; p7: Q9P, R11K, D48E; pro: K14R, N61D; rev: E32K, S61G, E79D, N86K; tat: D9E, Y26F, P59T, Q63K, Q76R, R78Q; vif: V7A, M29I, A35T, F39S, E60G, K63N, T67V, I87M, G101D, I109L, S116A, I154V, K160R, E179K, G185E; vpr: G6E, I60L, I63M; vpu: L7V, A15V, I17L, R35K, E44D, N80D"}}}]}]}]}, {"name": "NODE_0000103", "node_attrs": {"div": 0.09750000000000002, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G471C", "G495T", "A2023G", "A2500C", "G2518A", "A2524G", "A2593G", "T4247C", "G4252A", "T5482C", "C5584T", "T5679C", "-5861A", "T5956A", "C5980T", "A6020G", "T6196C", "T6331C", "T6337A", "A6451G", "A6481G", "A6814G", "G6821T", "T6824C", "C7012T", "G8255A", "C8277T", "C8323G", "C8486T", "T8492C", "C8699T", "T8864G"], "gp120": ["I56V", "D66N", "R316Q"], "gp41": ["V318I"], "nef": ["D174E"], "p17": ["V46L", "A54S"], "pro": ["I93L"], "tat": ["W36R", "P70S"]}, "labels": {"aa": "gp120: I56V, D66N, R316Q; gp41: V318I; nef: D174E; p17: V46L, A54S; pro: I93L; tat: W36R, P70S"}}, "children": [{"name": "results/subtype_trees/CRF89_BF1.nwk", "node_attrs": {"div": 0.11858000000000002, "clade_membership": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G215A", "A278G", "-280G", "A301G", "-304A", "-305A", "A369C", "A380G", "T473C", "A474G", "A485T", "T486C", "A494C", "G579A", "T595G", "A607G", "G609A", "C645T", "A735G", "A740G", "T746C", "C747A", "T749G", "A755G", "C767T", "T773C", "T774A", "G806A", "G809A", "T827C", "G869A", "T875C", "C926T", "A977G", "T978A", "T979C", "A998G", "G1278A", "G1279A", "G1301A", "A1328G", "C1362A", "G1404A", "C1481T", "A1656C", "A1733G", "C1767A", "C1775G", "T1796C", "A1832G", "C1833A", "A1920G", "T1986A", "C1987A", "C2149A", "G2173A", "C2199T", "A2206C", "A2224G", "C2326T", "G2392A", "T2449C", "C2452T", "C2575T", "G2683A", "T2770C", "A2951G", "C3013T", "G3046A", "G3088A", "A3221G", "T3253C", "A3268G", "T3292C", "A3316G", "C3319T", "C3368T", "C3496T", "G3508A", "A3808C", "A4060G", "C4130A", "G4148A", "T4477G", "G4573A", "C4771A", "G4871C", "C4965T", "A4971G", "A4993C", "A5037T", "A5046C", "G5049A", "T5051A", "G5057A", "G5121A", "G5167A", "A5225G", "T5356C", "A5448C", "G5484C", "T5515A", "C5530A", "A5556G", "C5563G", "C5567A", "T5614A", "A5720G", "G5725A", "C5727T", "G5730A", "A5734T", "T5735A", "G5747T", "A5806G", "C5827T", "A5866T", "C5958A", "G6023C", "G6050A", "T6184C", "-6195C", "A6203-", "T6279A", "A6323G", "G6649A", "A6682G", "C6745T", "-6809A", "-6833A", "A6849C", "-6947A", "A7036G", "C7124T", "G7152C", "G7322T", "C7582T", "G7658C", "C7678T", "A7688G", "A7690G", "A7782G", "T7796A", "A7921T", "G7942A", "G7977A", "A8036G", "A8051C", "C8221T", "G8276T", "T8337A", "G8412C", "A8489T", "G8588A", "C8606T", "C8648T", "A8653G", "G8759T", "G8822A", "A8886C", "A8887G", "A8892G", "C8906G"], "INT": ["E11D", "P119T", "A125T"], "RT-p51": ["T35V", "T286A"], "RT-p66": ["T35V", "T286A"], "gp120": ["E4D", "T35K", "V57L", "-110T", "-112T", "L142K", "N157D", "S161T", "S162-", "D294E", "-319T", "K332T", "D365N", "N433T"], "gp41": ["V7L", "M54L", "E109D", "E119Q", "N160S", "S165T", "L206F", "G225E", "I245A", "A325F", "L345Q"], "nef": ["R49S", "K104R", "L139F", "K182R"], "p1": ["N9H"], "p17": ["K12Q", "N47D", "V82I", "F87C", "K91R", "V92I", "D102E"], "p24": ["I2V", "L6M", "L83T", "L211I", "G225S"], "p6": ["Q30K", "D32E", "Q52K"], "pro": ["T12E", "K41R", "L63Q"], "rev": ["S5R", "K14R", "L18I", "Y63C", "E68A"], "tat": ["L3I", "K24S", "Y47N", "Q63E", "T64N", "R78Q"], "vif": ["A62D", "R95S", "H127Y", "I129V", "Q136P", "T151S", "I154L", "A155T", "E179K"], "vpr": ["G6E", "S41G", "I84T", "A93N"], "vpu": ["K38R", "D40N", "I43Y", "M71V"]}, "labels": {"aa": "INT: E11D, P119T, A125T; RT-p51: T35V, T286A; RT-p66: T35V, T286A; gp120: E4D, T35K, V57L, -110T, -112T, L142K, N157D, S161T, S162-, D294E, -319T, K332T, D365N, N433T; gp41: V7L, M54L, E109D, E119Q, N160S, S165T, L206F, G225E, I245A, A325F, L345Q; nef: R49S, K104R, L139F, K182R; p1: N9H; p17: K12Q, N47D, V82I, F87C, K91R, V92I, D102E; p24: I2V, L6M, L83T, L211I, G225S; p6: Q30K, D32E, Q52K; pro: T12E, K41R, L63Q; rev: S5R, K14R, L18I, Y63C, E68A; tat: L3I, K24S, Y47N, Q63E, T64N, R78Q; vif: A62D, R95S, H127Y, I129V, Q136P, T151S, I154L, A155T, E179K; vpr: G6E, S41G, I84T, A93N; vpu: K38R, D40N, I43Y, M71V", "clade": "CRF89_BF1"}}, "children": [{"name": "CRF89_BF1_NODE_0000001", "node_attrs": {"div": 0.12552000000000002, "clade_membership": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T396C", "T476C", "A1241G", "A1343C", "C1456G", "T1483A", "A1492C", "A1687G", "A2198G", "G2273A", "G2362A", "A2374G", "A2464C", "G2682A", "A2842G", "T3262C", "A3402G", "T3469G", "G3556A", "C3610T", "A3676T", "A3877G", "G4268A", "C4321T", "T4428C", "C4444T", "G4549A", "T4820G", "G4888A", "G5363A", "G5382A", "C5383A", "G5548A", "C5651T", "A5995G", "C6110G", "C6145T", "T6160C", "-6213T", "A6765C", "T6766A", "G6771A", "-6834A", "A7094C", "T7114C", "T7153A", "T7403C", "T7642A", "A7936G", "A7943G", "A7947G", "G8085C", "A8170G", "C8386A", "T8387G", "C8413G", "A8446G", "G8458C", "T8640C", "A8652C", "C8904A", "G8945C", "C8952A"], "INT": ["V165I", "I218T"], "RT-p51": ["V60I", "G196E", "E436G"], "RT-p66": ["V60I", "G196E", "E436G", "K527N"], "gp120": ["Q86E", "-105N", "-106A", "-115S", "S306N", "-329K", "N365-", "N414Q"], "gp41": ["D113K", "E215G", "R261T"], "nef": ["P24R", "Q35R", "R39T", "E201D", "Q204K"], "p6": ["N3S"], "p7": ["F6Y", "Q9P"], "rev": ["K30E", "E32R", "E57Q", "E79D", "T108A"], "tat": ["A58T", "Q76R", "N80D"], "vif": ["D78E", "G101D"], "vpu": ["A15V"]}, "labels": {"aa": "INT: V165I, I218T; RT-p51: V60I, G196E, E436G; RT-p66: V60I, G196E, E436G, K527N; gp120: Q86E, -105N, -106A, -115S, S306N, -329K, N365-, N414Q; gp41: D113K, E215G, R261T; nef: P24R, Q35R, R39T, E201D, Q204K; p6: N3S; p7: F6Y, Q9P; rev: K30E, E32R, E57Q, E79D, T108A; tat: A58T, Q76R, N80D; vif: D78E, G101D; vpu: A15V"}}, "children": [{"name": "CRF89_BF1_NODE_0000002", "node_attrs": {"div": 0.13762000000000002, "clade_membership": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "G401A", "G455A", "C473T", "A488G", "T495C", "G520C", "C525T", "A530T", "A541C", "A605G", "G607A", "G620A", "A678G", "C681A", "C765T", "G771A", "G1412A", "C1439T", "A1476G", "A1644G", "C1670G", "T1783A", "C1831T", "C1985A", "T2353C", "G2387T", "A2399C", "C2596A", "C3002T", "G3004A", "A3037G", "A3043G", "G3094A", "A3097T", "C3100T", "A3217G", "C3223A", "C3275T", "A3449G", "C3499T", "G3805A", "G3859A", "A4093G", "A4130C", "C4162T", "G4407A", "A4455T", "C4728A", "A5057G", "G5212A", "C5227T", "T5403G", "C5412A", "C5511T", "A5567C", "A5607G", "A5621T", "A5748T", "A5760G", "G5781T", "A5787T", "T5788G", "-5826T", "T6024A", "A6050G", "-6168A", "A6177C", "G6179A", "C6180A", "C6181T", "-6203G", "C6278A", "A6288G", "T6289A", "G6333A", "G6451A", "C6469T", "C6840A", "-6992A", "-6993C", "-6996A", "-6998A", "-7000A", "A7005G", "C7008A", "A7210G", "G7256A", "G7288A", "G7315A", "A7589G", "G7627T", "G7640A", "T7789G", "G7944A", "G8036T", "T8101A", "A8118G", "A8152G", "T8176C", "A8204G", "T8206A", "G8242A", "C8293T", "A8337T", "G8393A", "G8427A", "A8597T", "G8653A", "A8701T", "G8787C", "A8788C", "A8806G", "C8921T"], "INT": ["T119P", "R211K", "Y227F"], "RT-p51": ["A98S", "K102Q"], "RT-p66": ["A98S", "K102Q", "K452E"], "gp120": ["V56I", "L57H", "N66D", "-113N", "-118T", "H145R", "E294D", "-378N", "T385-", "V468I"], "gp41": ["M4I", "T96A", "F162L", "R214Q", "A245F", "E272G", "I301V", "Q345L"], "nef": ["G29R", "V85F", "R104Q", "D149P", "K155R"], "p1": ["I5V"], "p17": ["S54P", "G62A", "Q65H", "Q69P", "R91K", "T115A", "Q116K"], "p2": ["A11S", "V13-"], "p24": ["H12Y", "A14T"], "p6": ["L35Y", "Y36P", "S51L"], "p7": ["S4G"], "rev": ["I18L", "C63F", "C85S", "I102V"], "tat": ["D9E", "N12K", "N64T", "G79R"], "vif": ["H48N"], "vpu": ["Q5V", "R47I", "E58D"]}, "labels": {"aa": "INT: T119P, R211K, Y227F; RT-p51: A98S, K102Q; RT-p66: A98S, K102Q, K452E; gp120: V56I, L57H, N66D, -113N, -118T, H145R, E294D, -378N, T385-, V468I; gp41: M4I, T96A, F162L, R214Q, A245F, E272G, I301V, Q345L; nef: G29R, V85F, R104Q, D149P, K155R; p1: I5V; p17: S54P, G62A, Q65H, Q69P, R91K, T115A, Q116K; p2: A11S, V13-; p24: H12Y, A14T; p6: L35Y, Y36P, S51L; p7: S4G; rev: I18L, C63F, C85S, I102V; tat: D9E, N12K, N64T, G79R; vif: H48N; vpu: Q5V, R47I, E58D"}}, "children": [{"name": "MW802823", "node_attrs": {"div": 0.17374, "accession": "MW802823", "clade_membership": {"value": "CRF89_BF1"}, "country": {"value": "ES"}, "date": {"value": 2019.0}, "Strain_name": {"value": "MS0360"}, "LANL_subtype": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C127T", "C369G", "A431G", "C456T", "C462A", "C507A", "G508A", "A513T", "C531T", "C540T", "C558A", "G562A", "A563G", "G641T", "G689A", "C746T", "G749A", "A776G", "T851C", "A905G", "T936C", "G998A", "A1115C", "C1133T", "T1148C", "A1151G", "C1220T", "A1242G", "C1243T", "G1256A", "A1271C", "C1292G", "G1302A", "G1328A", "G1346A", "G1503A", "G1552A", "A1606G", "A1643G", "T1676C", "T1754C", "G1775A", "A1781G", "C1782T", "G1784C", "T1785C", "A1786C", "C1787T", "T1790C", "A1819G", "A1918G", "T1978G", "A1985G", "A1993C", "T1996C", "T2011C", "T2013C", "C2098T", "G2311A", "T2315C", "A2342C", "A2368G", "A2396C", "C2420T", "A2459G", "C2467T", "C2488T", "A2498C", "T2499G", "A2613G", "C2615A", "C2626T", "A2713G", "G2727A", "C2797A", "G2821A", "T2885C", "G2937A", "A2967C", "A2972G", "A2985G", "C3095T", "A3116G", "A3195T", "C3252T", "T3328C", "C3352T", "G3469A", "A3508G", "G3520A", "C3533A", "C3535A", "T3545A", "A3616G", "T3644A", "A3666T", "A3814C", "A3825G", "G3846A", "A3955G", "T3967C", "T4005C", "A4012G", "A4036G", "C4042T", "A4105G", "G4150A", "C4207T", "G4267A", "T4276C", "A4391T", "C4396A", "T4412C", "G4539A", "C4643T", "C4674T", "G4696A", "T4702G", "C4724T", "G4737A", "A4769C", "G4770A", "G4865A", "C4939T", "T5018C", "A5061G", "C5062A", "A5119G", "G5131A", "A5187G", "A5215C", "A5293G", "C5306T", "G5386A", "G5427A", "G5447A", "G5462A", "T5478C", "G5483A", "C5484T", "A5491G", "A5548C", "G5556C", "G5575A", "T5578C", "C5602T", "T5617C", "G5629A", "A5643T", "T5670A", "C5688T", "A5715G", "T5789C", "G5790A", "-5825C", "A5849T", "T5866G", "C5884T", "C5916A", "G5948T", "A5956C", "A5958G", "T5964C", "A6008C", "T6010C", "G6020C", "G6028A", "A6037C", "T6109A", "T6145G", "A6159C", "C6165G", "-6167G", "A6176G", "C6184T", "A6186C", "T6193C", "C6195G", "T6199C", "-6201C", "G6204A", "G6214A", "C6221A", "C6222A", "C6228A", "C6233A", "C6238T", "A6282G", "G6284C", "T6285A", "A6289G", "A6304C", "G6314A", "A6316C", "C6317-", "C6318-", "A6319-", "T6321A", "C6322G", "A6326G", "G6336C", "G6339A", "-6340A", "G6345T", "T6351G", "A6353C", "A6367C", "A6374G", "G6392A", "T6457A", "G6490A", "A6525G", "A6526G", "C6618T", "C6631T", "A6684C", "-6688T", "-6689A", "-6690T", "-6691A", "-6692C", "-6693A", "-6697G", "A6703-", "A6706G", "C6708T", "T6719A", "C6758T", "A6764G", "G6773A", "A6799C", "C6810T", "G6814A", "A6819T", "-6830C", "-6831C", "-6832A", "T6835C", "A6836-", "A6837-", "T6838-", "A6865T", "T6876C", "G6894A", "G6936A", "C6938T", "T6939C", "A6945-", "T6946-", "A6947-", "-6981G", "-6982C", "-6983T", "-6984C", "-6985A", "-6986A", "-6987A", "-6988T", "-6989G", "-6990C", "-6994T", "-6995C", "-6997A", "-6999C", "-7002A", "T7009G", "A7013G", "C7014T", "C7025A", "G7076T", "A7095G", "C7096A", "C7101A", "A7106G", "A7107T", "T7123C", "A7155T", "-7162C", "A7169G", "G7181T", "G7182T", "T7228C", "T7325C", "C7328G", "G7333A", "G7343A", "G7428A", "T7433C", "G7448C", "C7463T", "G7508C", "A7527T", "G7534A", "C7579T", "G7631T", "G7633T", "A7642G", "G7657A", "C7658G", "G7660A", "A7666G", "G7701A", "G7709A", "A7710C", "A7722T", "A7747G", "C7801T", "A7818G", "G7831A", "T7877A", "A7880C", "A7931T", "C7950A", "A7998C", "C8005G", "C8009A", "G8017C", "T8097C", "T8159G", "C8167T", "A8172T", "T8197C", "C8223T", "G8231A", "T8287C", "G8323A", "G8330T", "G8335A", "G8349A", "A8370G", "G8402A", "A8457G", "G8462A", "A8481C", "T8483G", "A8531T", "A8584T", "G8590A", "T8606C", "G8656A", "A8657G", "A8662G", "G8678A", "T8700A", "C8768T", "G8795T", "G8798A", "G8807A", "C8809A", "A8812C", "A8827C", "G8834A", "G8888A", "G8905A", "C8927T", "G8935A", "A9007G", "-9014G", "G9016C", "C9018A", "A9019G", "T9029C"], "INT": ["E13D", "N17S", "S24N", "I60M", "V77A", "T206S", "D207E", "S255N"], "RT-p51": ["K101Q", "K122E", "I135R", "K173R", "Q174K", "R211K", "R281K", "E291A", "I293V", "K297R", "Q334Y", "I341V", "Q367L", "T376A", "T386I"], "RT-p66": ["K101Q", "K122E", "I135R", "K173R", "Q174K", "R211K", "R281K", "E291A", "I293V", "K297R", "Q334Y", "I341V", "Q367L", "T376A", "T386I", "H480K", "L484I", "L517I", "Q524L"], "gp120": ["D4E", "T21N", "A32S", "K35R", "V37A", "N52H", "I56L", "D85E", "N102T", "T104S", "N105D", "-107N", "N108-", "-111T", "-114S", "S115T", "-119L", "-120I", "-121E", "P123K", "A125E", "Q127K", "R150S", "V154I", "P155K", "I156D", "N158D", "D159Q", "N160D", "-162K", "R164M", "I166R", "N167H", "T174A", "V180I", "N201K", "K224R", "T255I", "K277T", "-280H", "I281M", "P285L", "F289I", "H302Y", "G307R", "E315D", "T319I", "K322M", "L341P", "S347N", "S360T", "G361Q", "L362-", "F363-", "N364-", "T366-", "-379N", "-380T", "-381N", "-382G", "-383K", "T387V", "A408S", "Q414R", "T416N", "N418V", "T433S", "N434S", "I439V", "G443L"], "gp41": ["F8L", "L9V", "A14T", "E49Q", "V69L", "Y75F", "D109E", "E110Y", "M118I", "Q119E", "R133K", "E136T", "N140I", "K172R", "M176I", "S192T", "I193L", "I210F", "Q214E", "P216H", "L265S", "W286G", "Q290L", "T307I", "V310I", "A343S"], "nef": ["G3S", "I10V", "M20I", "T39A", "N47Q", "E63D", "Y81F", "G83E", "R105K", "Q107R", "Y120I", "E151D", "A156D", "N157T", "N162T", "K184E", "R188K", "R198K"], "p17": ["Q12E", "R58K", "I60L", "P66S", "P69S", "L75I", "R76K", "E102D"], "p24": ["M6I", "L15M", "E128D", "T171V", "E180D", "D187E", "V191I"], "p6": ["N47S"], "p7": ["V13I", "R29K", "K47R"], "pro": ["D60E", "Q63E", "E65D", "I72T"], "rev": ["E11D", "R14T", "Y28F", "R53G", "A54E", "V104G", "P107S", "*117Q"], "tat": ["V4I", "S24N", "R29Q", "R36H", "I39V", "T58P", "Q60H", "D67N", "S68P", "P81T"], "vif": ["H30Y", "R37K", "F39C", "V51I", "E61D", "D62N", "S118F", "T159E", "Q178R", "G182D"], "vpr": ["N28S", "I63M", "S94N"], "vpu": ["P3T", "A8T", "L12F", "L27F", "N81I"]}, "labels": {"aa": "INT: E13D, N17S, S24N, I60M, V77A, T206S, D207E, S255N; RT-p51: K101Q, K122E, I135R, K173R, Q174K, R211K, R281K, E291A, I293V, K297R, Q334Y, I341V, Q367L, T376A, T386I; RT-p66: K101Q, K122E, I135R, K173R, Q174K, R211K, R281K, E291A, I293V, K297R, Q334Y, I341V, Q367L, T376A, T386I, H480K, L484I, L517I, Q524L; gp120: D4E, T21N, A32S, K35R, V37A, N52H, I56L, D85E, N102T, T104S, N105D, -107N, N108-, -111T, -114S, S115T, -119L, -120I, -121E, P123K, A125E, Q127K, R150S, V154I, P155K, I156D, N158D, D159Q, N160D, -162K, R164M, I166R, N167H, T174A, V180I, N201K, K224R, T255I, K277T, -280H, I281M, P285L, F289I, H302Y, G307R, E315D, T319I, K322M, L341P, S347N, S360T, G361Q, L362-, F363-, N364-, T366-, -379N, -380T, -381N, -382G, -383K, T387V, A408S, Q414R, T416N, N418V, T433S, N434S, I439V, G443L; gp41: F8L, L9V, A14T, E49Q, V69L, Y75F, D109E, E110Y, M118I, Q119E, R133K, E136T, N140I, K172R, M176I, S192T, I193L, I210F, Q214E, P216H, L265S, W286G, Q290L, T307I, V310I, A343S; nef: G3S, I10V, M20I, T39A, N47Q, E63D, Y81F, G83E, R105K, Q107R, Y120I, E151D, A156D, N157T, N162T, K184E, R188K, R198K; p17: Q12E, R58K, I60L, P66S, P69S, L75I, R76K, E102D; p24: M6I, L15M, E128D, T171V, E180D, D187E, V191I; p6: N47S; p7: V13I, R29K, K47R; pro: D60E, Q63E, E65D, I72T; rev: E11D, R14T, Y28F, R53G, A54E, V104G, P107S, *117Q; tat: V4I, S24N, R29Q, R36H, I39V, T58P, Q60H, D67N, S68P, P81T; vif: H30Y, R37K, F39C, V51I, E61D, D62N, S118F, T159E, Q178R, G182D; vpr: N28S, I63M, S94N; vpu: P3T, A8T, L12F, L27F, N81I"}}}, {"name": "MW802822", "node_attrs": {"div": 0.17219, "accession": "MW802822", "clade_membership": {"value": "CRF89_BF1"}, "country": {"value": "ES"}, "date": {"value": 2017.0}, "Strain_name": {"value": "M1079"}, "LANL_subtype": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C151T", "T165-", "G167A", "A359G", "A425G", "C471G", "A491G", "A516T", "G524A", "G557A", "C587T", "G615A", "G650A", "A653G", "A656G", "C662T", "A747G", "T748C", "G755C", "G762A", "A774C", "A779G", "C845T", "A968T", "A980G", "T992G", "T1052C", "C1060A", "C1094T", "G1109A", "C1220A", "G1290A", "A1359T", "G1430A", "G1472A", "G1495A", "A1496G", "A1526G", "A1529C", "A1532C", "A1592G", "C1598T", "G1697A", "T1741C", "A1743G", "T1785G", "A1786G", "C1787A", "G1794A", "C1796T", "A1804G", "C1826T", "A1839G", "A1857T", "A1894T", "G1920A", "A1980G", "A1986C", "G2008A", "A2012G", "A2014G", "T2080G", "G2134A", "A2230G", "T2257C", "C2263T", "C2281T", "C2296T", "T2326C", "A2403G", "G2602A", "A2629G", "C2635T", "A2726G", "A2794G", "A2896G", "G2969A", "A3020C", "C3067A", "C3095A", "T3197G", "G3221T", "C3225T", "A3226G", "A3274G", "G3307A", "C3322T", "G3442A", "C3498T", "C3535T", "A3543T", "G3557A", "G3631A", "C3649A", "A3655G", "G3686A", "A3817G", "G3989A", "T4039C", "A4096G", "C4141T", "A4148G", "G4263C", "T4388G", "C4501T", "G4689A", "T4702C", "A4721G", "A4771C", "G4799A", "C4803A", "T4842G", "A4845G", "A4847G", "G4862A", "C4871T", "A4911C", "T4914C", "T4965C", "A4969G", "T5018G", "C5019T", "G5069A", "G5128A", "A5150C", "G5176A", "A5191G", "A5233C", "C5237T", "C5248T", "T5354C", "T5391C", "T5436C", "A5446G", "C5461A", "G5463A", "C5559T", "A5570G", "T5584C", "G5599A", "A5614C", "A5622G", "G5653A", "C5679T", "C5688G", "G5700A", "G5729A", "A5735T", "A5743C", "A5805G", "-5825A", "T5860C", "G5864A", "C5924T", "G6020A", "G6029C", "A6030C", "A6031T", "A6079G", "C6087G", "A6094C", "T6134C", "T6154C", "-6167A", "-6170G", "-6171T", "-6172C", "-6173A", "-6174G", "-6175T", "A6182G", "A6186G", "C6187T", "C6190T", "A6194G", "C6198G", "-6201A", "C6205T", "T6213G", "A6282T", "A6286C", "G6323A", "A6324G", "G6329A", "C6331T", "A6337C", "-6340T", "T6341A", "C6343T", "G6425A", "A6464G", "G6466A", "G6532A", "G6572A", "A6659T", "G6682A", "-6697A", "-6698C", "-6699C", "-6700G", "-6701A", "-6702T", "A6733G", "C6748T", "C6765T", "A6789C", "A6790C", "A6796G", "A6801G", "A6805G", "A6809G", "A6812G", "T6815C", "A6818C", "G6820A", "T6821A", "C6822A", "T6823A", "A6833C", "A6834C", "A6848C", "C6849A", "C6925T", "A6926G", "T6932G", "-6948A", "-6949A", "-6950A", "-6951C", "-6952A", "C6991-", "-6994A", "-6995G", "-6997C", "-6999A", "A7001G", "-7002G", "T7003G", "G7004A", "A7037G", "T7039G", "G7060A", "C7064A", "A7085G", "A7113G", "T7150C", "A7160G", "-7162T", "A7225G", "A7231G", "A7268G", "A7375G", "A7450G", "G7453A", "C7463A", "A7522G", "C7547A", "T7591C", "C7625T", "A7626T", "G7630T", "T7636C", "C7651A", "A7669G", "G7690A", "G7712A", "A7713T", "A7747C", "A7756T", "C7801A", "G7862T", "G7943C", "A8018C", "G8050A", "T8155C", "T8156C", "G8157T", "A8193G", "G8194A", "T8221C", "A8241G", "A8258T", "G8274T", "T8278A", "G8329A", "T8334G", "G8373A", "A8388G", "G8418A", "A8456C", "A8531G", "G8590C", "C8640A", "A8647G", "T8648G", "G8666T", "C8688A", "C8741T", "A8746T", "T8747C", "C8791A", "C8810T", "T8860C", "G8864T", "A8869C", "G8892C", "A8901T", "G8902C", "G8905C", "A8938G", "A8953G", "C8957T", "A8969G", "T9025G", "C9041A", "C9068T"], "INT": ["V72I", "T125A", "G163A", "S205A"], "RT-p51": ["K103R", "I178M", "R211G", "V292I", "I309L", "D324E", "Q334N", "L368V", "T376S", "T377M", "I393M"], "RT-p66": ["K103R", "I178M", "R211G", "V292I", "I309L", "D324E", "Q334N", "L368V", "T376S", "T377M", "I393M", "S468F", "Q483L", "D488N", "V531I"], "gp120": ["D4N", "D34E", "E59P", "T78R", "A106V", "-107S", "N108T", "-109N", "T110A", "-111S", "-114A", "-116N", "-117N", "-119D", "-120N", "K143I", "D157S", "D159N", "T161S", "-162S", "A191T", "K204E", "E240K", "T269S", "-280P", "N304I", "K312T", "Q316R", "T319A", "K320E", "K322Q", "S323K", "T332Q", "N358D", "S360A", "-365K", "-367T", "-376G", "-377S", "I395V", "I411V", "Q414H", "N420S", "N436D", "K472E"], "gp41": ["I24M", "N42S", "L54M", "L82M", "Q108F", "E137I", "E148D", "N166K", "V187F", "N239H", "W285L", "K297R", "E313G", "I319L", "R324I", "F325L", "L344W"], "nef": ["V11I", "I16V", "A26T", "E38D", "G83A", "L100I", "Y102W", "E108D", "H116N", "Y120F", "Y135F", "P150Q", "M173T", "E174D", "E176A", "K184Q", "R188T", "H199R", "K204R"], "p17": ["L46V", "I61L", "V94I"], "p24": ["M6A", "V11I", "E79D", "H87Q", "T110N", "D163E", "D187N", "T210S"], "p6": ["I21T", "T22A", "-26K", "Q28K", "K30E", "K31G", "E32Q", "E33G", "A39T", "K42R"], "p7": ["R10K", "E21D"], "pro": ["K14R", "K20M", "R41K", "N61S", "Q63T", "I72V"], "rev": ["A15V", "I19V", "R32T", "Q57A", "A68T", "L103P", "E116K"], "tat": ["S24G", "H65R", "S70P", "Q78H"], "vif": ["A35T", "F39S", "D62A", "H73N", "S86A", "I87V", "I109L", "Y110H", "Y127H", "K128R", "R181K"], "vpr": ["N16H", "H45Y", "S96P"], "vpu": ["A16T", "R41K", "Y43F", "I46L", "A61V", "P73H"]}, "labels": {"aa": "INT: V72I, T125A, G163A, S205A; RT-p51: K103R, I178M, R211G, V292I, I309L, D324E, Q334N, L368V, T376S, T377M, I393M; RT-p66: K103R, I178M, R211G, V292I, I309L, D324E, Q334N, L368V, T376S, T377M, I393M, S468F, Q483L, D488N, V531I; gp120: D4N, D34E, E59P, T78R, A106V, -107S, N108T, -109N, T110A, -111S, -114A, -116N, -117N, -119D, -120N, K143I, D157S, D159N, T161S, -162S, A191T, K204E, E240K, T269S, -280P, N304I, K312T, Q316R, T319A, K320E, K322Q, S323K, T332Q, N358D, S360A, -365K, -367T, -376G, -377S, I395V, I411V, Q414H, N420S, N436D, K472E; gp41: I24M, N42S, L54M, L82M, Q108F, E137I, E148D, N166K, V187F, N239H, W285L, K297R, E313G, I319L, R324I, F325L, L344W; nef: V11I, I16V, A26T, E38D, G83A, L100I, Y102W, E108D, H116N, Y120F, Y135F, P150Q, M173T, E174D, E176A, K184Q, R188T, H199R, K204R; p17: L46V, I61L, V94I; p24: M6A, V11I, E79D, H87Q, T110N, D163E, D187N, T210S; p6: I21T, T22A, -26K, Q28K, K30E, K31G, E32Q, E33G, A39T, K42R; p7: R10K, E21D; pro: K14R, K20M, R41K, N61S, Q63T, I72V; rev: A15V, I19V, R32T, Q57A, A68T, L103P, E116K; tat: S24G, H65R, S70P, Q78H; vif: A35T, F39S, D62A, H73N, S86A, I87V, I109L, Y110H, Y127H, K128R, R181K; vpr: N16H, H45Y, S96P; vpu: A16T, R41K, Y43F, I46L, A61V, P73H"}}}]}, {"name": "CRF89_BF1_NODE_0000003", "node_attrs": {"div": 0.14870000000000003, "clade_membership": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G90T", "T91G", "C93T", "T94G", "A97T", "A98T", "G99T", "G102A", "T103C", "G104A", "G106T", "C110A", "C111T", "G112A", "T113G", "C127-", "A214-", "A431G", "C482T", "A527G", "A673C", "C679A", "C688T", "T728C", "G735A", "A836G", "C1094T", "C1133T", "C1137T", "G1173A", "T1174C", "A1349G", "C1350T", "G1355A", "A1418G", "A1449G", "A1450G", "T1451G", "A1452G", "A1543G", "A1580G", "G1588A", "A1589G", "T1676C", "G1709T", "A1715G", "C1749T", "A1767G", "A1770C", "A1772G", "A1774G", "A1819G", "G1832A", "A1839T", "A1857T", "G2009A", "G2074A", "T2077G", "G2224A", "A2230G", "A2350G", "C2449A", "A2519G", "A2569G", "T2575C", "G2602A", "A2716G", "T2723C", "A2938G", "A2985G", "T3132A", "G3283A", "A3364G", "G3398T", "G3442A", "G3494A", "C3535G", "A3637G", "C3649T", "A3745G", "T3746C", "A3770G", "A3817G", "G3989A", "C3995A", "C4075T", "T4117C", "C4207T", "T4276C", "C4674T", "C4691T", "C4754T", "G4766A", "G4767A", "A4768C", "G4820A", "C4827T", "C4976A", "G5066A", "C5084T", "A5121G", "G5128A", "C5162T", "G5185A", "A5191G", "T5254C", "T5292C", "C5306T", "T5436C", "G5462A", "C5481T", "C5484G", "G5575A", "T5616C", "G5720A", "T5747G", "A5748G", "-5812C", "-5813T", "-5814T", "-5815T", "-5816T", "-5817T", "-5818A", "-5819T", "C5824-", "T5827-", "T5828-", "T5829-", "A5830-", "T5831-", "A5845G", "G5948T", "A6065G", "T6151C", "C6165G", "C6195A", "G6204-", "C6205-", "C6207-", "C6208-", "A6251G", "T6252C", "G6253A", "A6254T", "G6267A", "A6279G", "T6285A", "A6304C", "G6314A", "C6318A", "A6320C", "C6331T", "C6343T", "T6351G", "A6368G", "C6369T", "G6392A", "G6425A", "C6562T", "-6688T", "-6690T", "-6691A", "-6692C", "-6693G", "T6694G", "G6714A", "T6735A", "T6745C", "C6758T", "A6781G", "T6787G", "C6792A", "A6798G", "A6806G", "T6821A", "T6827A", "T6828C", "C6829T", "A6836G", "A6837T", "A6841T", "A6854G", "A6893C", "G6894A", "G6935A", "G6936A", "-6948T", "-6949C", "-6950T", "-6951C", "-6952A", "-6953G", "-6956A", "-6957T", "-6958T", "-6960A", "-6961T", "C7096A", "C7127T", "G7146A", "T7150-", "T7156C", "A7158-", "T7159-", "A7160-", "A7161-", "A7163-", "T7170C", "G7238A", "A7275G", "A7306C", "A7313C", "T7330G", "A7373C", "G7552A", "T7606A", "A7620G", "G7630T", "G7633A", "G7712A", "G7720A", "A7733C", "T7813C", "A7903G", "A7953G", "G7957T", "A7977G", "C8009A", "G8017C", "A8019G", "G8117A", "G8130A", "C8146A", "T8156C", "G8157T", "G8173A", "G8274T", "T8276A", "C8296T", "T8414G", "G8432A", "T8471A", "G8476C", "A8735G", "G8753A", "C8873A", "G8892A", "G8909A", "C8913T", "G8915C", "A8922G", "G8935A", "C9041T", "A9095G", "G9096A", "T9108C", "T9109A", "C9133T", "A9135G"], "INT": ["V72I", "L74M"], "RT-p51": ["I142V", "K297R", "F346Y", "A435S"], "RT-p66": ["I142V", "K297R", "F346Y", "A435S", "V467I", "H480Q", "I559V"], "gp120": ["A32S", "D34E", "N71D", "-107T", "N108S", "-109T", "T110N", "-111N", "-113L", "-114K", "-117T", "M133A", "T134S", "R138K", "Q141K", "K142R", "V144E", "R150S", "V154I", "P155Q", "I156L", "D157E", "N160S", "I166R", "T172V", "V180I", "A191T", "-280R", "R287Q", "H302Y", "N304T", "N311K", "T313K", "E315G", "K318E", "F325-", "P326-", "N334D", "S347H", "G361K", "N420S", "G431-", "N434I", "N435-", "N436-", "T437-", "I439T", "E462K", "K474R"], "gp41": ["M4L", "I24L", "N42S", "K106R", "E137Q", "K144Q", "R214G", "D217G", "R218S", "E225G", "N239S", "E272K", "R276H", "W285L", "R324I", "F325I"], "nef": ["S45T", "V85L", "D177E", "L191F", "I194V", "R198K"], "p17": ["Q113P", "T115K", "A118V"], "p2": ["N9G", "T10-", "V12S"], "p24": ["V2I", "V148T", "P207S"], "p6": ["P23S", "K30E", "K31Q", "E32G", "N47S"], "p7": ["K26R", "R41K"], "pro": ["E12K", "K14I", "K20M", "A71T"], "rev": ["A37S", "A54E", "G90E", "P100T", "L103S", "V109I"], "tat": ["R29Q", "D67N", "T82A", "G83V"], "vif": ["H30Y", "E61T", "S130R", "K179E", "R181K"], "vpr": ["E6G", "I63T"], "vpu": ["P3T", "L27F", "R38K", "P73L", "N80D"]}, "labels": {"aa": "INT: V72I, L74M; RT-p51: I142V, K297R, F346Y, A435S; RT-p66: I142V, K297R, F346Y, A435S, V467I, H480Q, I559V; gp120: A32S, D34E, N71D, -107T, N108S, -109T, T110N, -111N, -113L, -114K, -117T, M133A, T134S, R138K, Q141K, K142R, V144E, R150S, V154I, P155Q, I156L, D157E, N160S, I166R, T172V, V180I, A191T, -280R, R287Q, H302Y, N304T, N311K, T313K, E315G, K318E, F325-, P326-, N334D, S347H, G361K, N420S, G431-, N434I, N435-, N436-, T437-, I439T, E462K, K474R; gp41: M4L, I24L, N42S, K106R, E137Q, K144Q, R214G, D217G, R218S, E225G, N239S, E272K, R276H, W285L, R324I, F325I; nef: S45T, V85L, D177E, L191F, I194V, R198K; p17: Q113P, T115K, A118V; p2: N9G, T10-, V12S; p24: V2I, V148T, P207S; p6: P23S, K30E, K31Q, E32G, N47S; p7: K26R, R41K; pro: E12K, K14I, K20M, A71T; rev: A37S, A54E, G90E, P100T, L103S, V109I; tat: R29Q, D67N, T82A, G83V; vif: H30Y, E61T, S130R, K179E, R181K; vpr: E6G, I63T; vpu: P3T, L27F, R38K, P73L, N80D"}}, "children": [{"name": "MW802824", "node_attrs": {"div": 0.16722000000000004, "accession": "MW802824", "clade_membership": {"value": "CRF89_BF1"}, "country": {"value": "ES"}, "date": {"value": 2020.0}, "Strain_name": {"value": "TO0275"}, "LANL_subtype": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["-127T", "T153C", "C525A", "T534G", "C558T", "G615A", "G677A", "A680G", "A774C", "T788C", "T917C", "A968C", "T1148C", "T1172C", "A1173T", "G1192A", "G1461A", "G1495A", "C1523T", "G1664A", "A1673G", "C1688A", "T1741C", "A1968G", "G2023A", "C2044T", "T2066C", "C2075T", "T2080G", "A2210G", "G2311A", "A2437C", "G2462A", "T2497C", "A2498G", "G2548A", "G2722A", "A2972G", "T3045C", "T3049C", "C3060T", "A3202G", "C3222T", "A3251G", "A3295C", "A3302G", "A3386C", "A3454G", "C3712T", "A3744G", "C3826T", "C4110T", "C4428T", "G4799A", "A4878G", "T4965C", "G4995T", "G5013A", "G5014A", "A5015C", "A5048G", "C5102T", "G5179A", "T5245C", "C5333T", "A5385G", "C5397A", "T5492C", "A5548C", "A5575C", "A5637G", "G5775A", "G5784T", "G5836A", "G6029-", "A6030-", "A6031-", "G6130A", "T6169-", "C6181T", "C6184A", "A6185T", "A6186C", "C6187A", "C6190A", "T6199C", "A6200-", "C6202-", "A6206-", "G6220T", "C6275T", "A6276G", "A6282G", "C6287T", "C6293G", "G6303A", "C6304T", "G6323A", "A6324G", "A6327G", "G6329A", "A6330G", "G6333A", "A6337T", "-6340T", "A6354G", "G6391A", "A6484T", "A6505G", "G6572A", "T6577G", "G6611A", "C6631T", "A6646C", "-6689G", "G6725A", "A6734C", "G6743A", "A6790C", "G6797A", "A6812G", "G6814A", "C6822G", "C6843A", "A6844T", "A6845G", "A6937G", "-6954C", "-6955T", "-6959T", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "-6992A", "-6993C", "-6994T", "-6995A", "-6996T", "-6997T", "-6998A", "-6999C", "-7000T", "-7002A", "G7026A", "G7040A", "G7072A", "A7095C", "A7113C", "G7145A", "A7148-", "A7149-", "A7151-", "C7152G", "A7153C", "-7158G", "G7276A", "A7297G", "G7343A", "C7469A", "A7492G", "A7532C", "C7590A", "A7641G", "G7777A", "G7997A", "A7998C", 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"T8215A", "G8231A", "T8232C", "A8255G", "T8290C", "A8311T", "G8323A", "G8329A", "G8330A", "C8331G", "A8378G", "C8382T", "T8440C", "A8494C", "C8504T", "T8505G", "A8597T", "C8720T", "G8799A", "A8804G", "A8893T", "G8935A", "T8947A", "G9010-", "G9011-", "C9012-", "G9013-", "G9015-", "G9016-", "C9017-", "C9018-", "A9019-", "G9020-", "T9025G", "A9027-", "C9028-", "T9029-", "G9030-", "G9031-", "G9032-", "G9033-", "A9034-", "G9035-", "T9036-", "G9037-", "G9038-", "C9039-", "T9040-", "C9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "T9060-", "A9061-", "A9062-", "G9063-", "C9064-", "A9065-", "G9066-", "C9067-", "C9068-", "G9069-", "C9070-", "T9071-", "T9072-", "T9073-", "T9074-", "C9075-", "G9076-", "C9077-", "C9078-", "T9079-", "G9080-", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "A9095-", "G9096-", "T9097-", "T9098-", "A9099-", "G9100-", "A9101-"], "INT": ["V72I"], "RT-p51": ["V35L", "K102M", "K173R", "A286P", "I293V", "A304E", "K374R"], "RT-p66": ["V35L", "K102M", "K173R", "A286P", "I293V", "A304E", "K374R", "T450N", "V458I", "S468P", "K512R"], "gp120": ["N3K", "N5D", "A32S", "D34E", "N52D", "L57F", "E59T", "N64D", "K69N", "N71S", "N102T", "-105N", "-106A", "-107N", "-109D", "-111L", "-113E", "Q127R", "Q141E", "K142R", "R150K", "P155Q", "D157E", "N158P", "D159I", "N160S", "T161N", "-162N", "N167H", "Y195C", "D202N", "K204T", "K212N", "I243V", "S246F", "G307R", "E315K", "K318R", "S323P", "H324R", "-328R", "S347T", "T366-", "-378N", "-381R", "-382A", "-384D", "T387I", "V396I", "N418R", "N434T", "N436G", "G443E", "V468I", "K472R"], "gp41": ["V2I", "M4A", "L7M", "I24L", "V72L", "K77R", "I84L", "T101N", "S102T", "S107T", "Q108Y", "E110M", "S125N", "N126Q", "E129N", "E130D", "R133K", "E137K", "E148D", "R231S", "D232A", "L242F", "C253F", "S256L", "S293R", "V310T", "I318V", "A343S"], "nef": ["P14S", "V33A", "N51T", "L55V", "V85F", "V153I", "K184V", "R198K", "F202Y", "D205G"], "p17": ["Q12E", "L46V", "D47N", "T53S", "E102D", "D121E"], "p2": ["A11N", "V13I"], "p24": ["A78T", "T210S"], "p6": ["F17-", "G18-", "E19-", "I21E", "P23T", "-26L", "P49Q"], "pro": ["L10I", "L19I", "K57R", "I64V", "K70R", "P79S"], "rev": ["I21V", "A54E", "I59L", "S61C", "Q74P", "S112A"], "tat": ["T19P", "D67G", "S68A", "Q78R"], "vif": ["V31I", "R37K", "F39S", "E61A", "D62N", "K63A", "I124L", "A137S"], "vpr": ["N28Q", "R36G", "H40Y", "E55R", "I60L", "I61T", "I63T", "H77Q", "Q86R", "R87G"], "vpu": ["-5G", "Y43F", "I46L", "R47I", "A50S"]}, "labels": {"aa": "INT: V72I; RT-p51: V35L, K102M, K173R, A286P, I293V, A304E, K374R; RT-p66: V35L, K102M, K173R, A286P, I293V, A304E, K374R, T450N, V458I, S468P, K512R; gp120: N3K, N5D, A32S, D34E, N52D, L57F, E59T, N64D, K69N, N71S, N102T, -105N, -106A, -107N, -109D, -111L, -113E, Q127R, Q141E, K142R, R150K, P155Q, D157E, N158P, D159I, N160S, T161N, -162N, N167H, Y195C, D202N, K204T, K212N, I243V, S246F, G307R, E315K, K318R, S323P, H324R, -328R, S347T, T366-, -378N, -381R, -382A, -384D, T387I, V396I, N418R, N434T, N436G, G443E, V468I, K472R; gp41: V2I, M4A, L7M, I24L, V72L, K77R, I84L, T101N, S102T, S107T, Q108Y, E110M, S125N, N126Q, E129N, E130D, R133K, E137K, E148D, R231S, D232A, L242F, C253F, S256L, S293R, V310T, I318V, A343S; nef: P14S, V33A, N51T, L55V, V85F, V153I, K184V, R198K, F202Y, D205G; p17: Q12E, L46V, D47N, T53S, E102D, D121E; p2: A11N, V13I; p24: A78T, T210S; p6: F17-, G18-, E19-, I21E, P23T, -26L, P49Q; pro: L10I, L19I, K57R, I64V, K70R, P79S; rev: I21V, A54E, I59L, S61C, Q74P, S112A; tat: T19P, D67G, S68A, Q78R; vif: V31I, R37K, F39S, E61A, D62N, K63A, I124L, A137S; vpr: N28Q, R36G, H40Y, E55R, I60L, I61T, I63T, H77Q, Q86R, R87G; vpu: -5G, Y43F, I46L, R47I, A50S"}}}, {"name": "CRF89_BF1_NODE_0000005", "node_attrs": {"div": 0.13316000000000003, "clade_membership": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G620A", "G677A", "C684A", "T718C", "A903T", "G908A", "A978G", "C979T", "G1016A", "C1656A", "A1657G", "A1988T", "G2470A", "T2499C", "C2584T", "A2629G", "T2632G", "A3027G", "G3268A", "T3431G", "G3664A", "A3982G", "G4262A", "G4864A", "C4907T", "A5839G", "A5956C", "T6169-", "C6221T", "C6238T", "G6263A", "A6338-", "G6339-", "C6562T", "G6644A", "C7127T", "C7152A", "A7710C", "A7719G", "C7755A", "T8595G", "T8740C", "A8746T", "T8747C", "G8753A", "T8813C", "C8913T", "G8915T", "A8922G", "T8923A", "A8924G", "G8929A", "C8937T", "G8943C"], "INT": ["G163R"], "RT-p51": ["I135T", "I178M", "K311R", "T376A"], "RT-p66": ["I135T", "I178M", "K311R", "T376A", "S446A"], "gp120": ["P123S", "V137I", "V264I", "K322Q", "N432T"], "gp41": ["E136T", "Q139R", "A151E"], "nef": ["I133T", "Y135F", "L191F", "I194E", "R196K", "H199Y", "E201Q"], "p1": ["H9S"], "p17": ["Q117K", "-124A", "-125S", "V128-", "S129-"], "p2": ["-12N"], "p24": ["T58S", "T83V"], "p6": ["P23-"], "pro": ["I64L"], "rev": ["E32K"], "tat": ["I3L"], "vif": ["R93K"], "vpr": ["N93A"], "vpu": ["N78D"]}, "labels": {"aa": "INT: G163R; RT-p51: I135T, I178M, K311R, T376A; RT-p66: I135T, I178M, K311R, T376A, S446A; gp120: P123S, V137I, V264I, K322Q, N432T; gp41: E136T, Q139R, A151E; nef: I133T, Y135F, L191F, I194E, R196K, H199Y, E201Q; p1: H9S; p17: Q117K, -124A, -125S, V128-, S129-; p2: -12N; p24: T58S, T83V; p6: P23-; pro: I64L; rev: E32K; tat: I3L; vif: R93K; vpr: N93A; vpu: N78D"}}, "children": [{"name": "KX818200", "node_attrs": {"div": 0.15980000000000003, "accession": "KX818200", "clade_membership": {"value": "CRF89_BF1"}, "country": {"value": "ES"}, "date": {"value": 2012.0}, "Strain_name": {"value": "P3177"}, "LANL_subtype": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T153C", "A161-", "T165C", "C207T", "T213A", "A214G", "A224G", "G301A", "A389G", "G407A", "G455A", "A513T", "C531T", "A571T", "G595A", "A609G", "G614T", "G639C", "C694A", "T695A", "C719T", "C746T", "T789C", "T824G", "G956T", "C1169T", "G1173A", "T1174C", "G1192A", "A1240G", "G1311T", "G1313A", "C1331A", "C1350T", "G1388A", "A1450G", "C1456A", "G1498A", "C1535T", "G1740A", "C1756T", "A1772G", "G1775A", "A1777G", "G1780A", "T1783A", "C1831T", "C1853T", "A1906C", "A2002C", "G2027A", "G2065A", "G2068A", "A2125G", "T2209C", "G2298A", "G2456C", "A2459G", "A2464C", "T2575C", "A2592G", "G2656A", "A2683T", "A2693G", "A2985C", "A3001G", "C3067A", "T3132A", "T3181C", "C3266T", "T3276A", "A3302G", "G3398A", "A3435G", "C3475T", "T3492C", "G3494A", "T3550C", "A3571G", "A3625G", "G3641A", "G3694A", "A3736G", "A3761G", "T3778C", "C3814A", "G3834A", "G3842T", "C3857A", "G3859A", "T3865G", "G3869A", "A3910C", "G3935A", "A3988G", "A4003G", "A4030G", "A4063T", "C4444T", "C4534T", "A4536G", "A4538G", "A4555C", "T4679C", "A4736G", "G4766T", "T4805G", "A4806C", "T4820C", "T4932A", "G4953A", "G4971A", "T5027C", "C5034T", "A5049C", "A5057G", "G5123A", "C5213A", "G5289T", "C5356T", "C5397T", "T5436C", "T5451C", "G5483A", "A5555C", "G5556A", "A5576C", "A5601G", "A5623G", "G5673A", "T5686C", "G5700A", "T5707C", "G5720A", "G5729A", "A5730C", "T5747G", "A5863T", "T5964C", "T5980C", "T6004C", "T6010C", "C6023G", "A6037T", "A6059G", "A6066G", "T6134A", "C6187T", "C6198G", "T6199C", "-6201G", "C6202T", "-6203G", "G6267A", "A6268T", "A6276T", "G6277T", "C6278A", "C6305G", "A6313G", "T6325C", "G6329A", "A6330G", "G6336C", "A6378C", "G6442T", "A6448T", "G6466A", "A6489G", "A6502C", "A6543C", "T6577A", "A6581G", "A6583G", "G6611A", "C6618T", "G6773A", "G6802A", "A6807G", "A6818C", "-6834G", "G6894C", "A6948G", "-6950A", "-6951G", "-6952T", "-6974A", "-6975A", "-6976C", "-6977A", "-6978C", "-6979A", "-6980G", "-6981G", "-6982A", "-6983G", "-6984T", "-6985C", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "-7002G", "A7007C", "G7076A", "C7108T", "A7151G", "A7155C", "T7156A", "-7162A", "G7181T", "G7195A", "C7201T", "G7340A", "A7342C", "A7366G", "G7440T", "G7495A", "G7508A", "G7519A", "A7527T", "T7622A", "C7625T", "G7627C", "G7628A", "A7641G", "T7642A", "C7658G", "G7729A", "G7753A", "G7769A", "A7796T", "T7921G", "G7992A", "A7996G", "G7997A", "A8011C", "C8037T", "A8086G", "A8188G", "G8216A", "A8233G", "A8241G", "A8263C", "A8288G", "T8332A", "G8398A", "G8462A", "T8640C", "A8805G", "C8825T", "A8851T", "T8855C", "A8893T", "C8907T", "A8912G", "C8921T", "A8930G", "G8991A", "A9007G", "-9009G", "G9011A", "C9012G", "-9014G", "G9015C", "G9016C", "C9017A", "C9018G"], "INT": ["D13E", "R20K", "A23S", "L28I", "V32I", "V54I", "E96D", "N254S", "S255G"], "RT-p51": ["V35I", "S68N", "D121H", "K122E", "E123D", "K166R", "T200A", "K297T", "D324E", "F346Y", "L394Q", "T403A", "A435T"], "RT-p66": ["V35I", "S68N", "D121H", "K122E", "E123D", "K166R", "T200A", "K297T", "D324E", "F346Y", "L394Q", "T403A", "A435T", "N447S", "V466A", "V467I", "E516K", "I556V"], "gp120": ["V37A", "L57V", "E59K", "K69E", "N71S", "L94I", "-109A", "-111N", "-114T", "-115S", "-116S", "-117G", "-118T", "-119L", "R138N", "Q141L", "L151V", "I153M", "D159S", "N160S", "Q175P", "K212R", "Q230P", "D241E", "I243V", "A253T", "T255I", "G307R", "K318R", "S347T", "N365S", "-368T", "-369G", "-371N", "-372D", "-373S", "-384D", "T385P", "T387I", "A408T", "T432S", "N436K", "G443W", "M447I"], "gp41": ["G13S", "R46M", "V69I", "Y75F", "S107T", "Q108Y", "D109K", "D113G", "Q119E", "T136A", "A156T", "T165S", "F206L", "G230D", "D232N", "D305N", "E313G", "E320D", "I329V"], "nef": ["R19K", "K155E", "Q170L", "K184V"], "p17": ["I60L", "P66S", "Y79F", "C87Y", "I92V", "E93D", "E102Q", "A120E"], "p2": ["N9-", "T10S", "A11T"], "p24": ["E75D", "V148T", "R154K", "K170R", "A194S", "P207S"], "p6": ["-26L", "E33G", "G34E", "L35Q", "S51L"], "p7": ["R11K"], "pro": ["V77I"], "rev": ["R14Q", "I21L", "R50E", "I55L", "R80G", "T114A"], "tat": ["R36H", "Q60P", "D67A"], "vif": ["E60D", "H73Q", "T74P", "S116T", "A123T", "V129I", "T155P"], "vpr": ["D7N", "P37T", "R62M", "T84I"], "vpu": ["P3T", "-5E", "I6V", "R38K", "R41N"]}, "labels": {"aa": "INT: D13E, R20K, A23S, L28I, V32I, V54I, E96D, N254S, S255G; RT-p51: V35I, S68N, D121H, K122E, E123D, K166R, T200A, K297T, D324E, F346Y, L394Q, T403A, A435T; RT-p66: V35I, S68N, D121H, K122E, E123D, K166R, T200A, K297T, D324E, F346Y, L394Q, T403A, A435T, N447S, V466A, V467I, E516K, I556V; gp120: V37A, L57V, E59K, K69E, N71S, L94I, -109A, -111N, -114T, -115S, -116S, -117G, -118T, -119L, R138N, Q141L, L151V, I153M, D159S, N160S, Q175P, K212R, Q230P, D241E, I243V, A253T, T255I, G307R, K318R, S347T, N365S, -368T, -369G, -371N, -372D, -373S, -384D, T385P, T387I, A408T, T432S, N436K, G443W, M447I; gp41: G13S, R46M, V69I, Y75F, S107T, Q108Y, D109K, D113G, Q119E, T136A, A156T, T165S, F206L, G230D, D232N, D305N, E313G, E320D, I329V; nef: R19K, K155E, Q170L, K184V; p17: I60L, P66S, Y79F, C87Y, I92V, E93D, E102Q, A120E; p2: N9-, T10S, A11T; p24: E75D, V148T, R154K, K170R, A194S, P207S; p6: -26L, E33G, G34E, L35Q, S51L; p7: R11K; pro: V77I; rev: R14Q, I21L, R50E, I55L, R80G, T114A; tat: R36H, Q60P, D67A; vif: E60D, H73Q, T74P, S116T, A123T, V129I, T155P; vpr: D7N, P37T, R62M, T84I; vpu: P3T, -5E, I6V, R38K, R41N"}}}, {"name": "CRF89_BF1_NODE_0000006", "node_attrs": {"div": 0.13782000000000003, "clade_membership": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C200T", "A398G", "T476C", "A579G", "A779G", "G998A", "T1457A", "-1458A", "-1460T", "A1492C", "A1673G", "G2273A", "G2311A", "C2975A", "C3253T", "C3535A", "T3943C", "A4148G", "G4549A", "A5085C", "A5621T", "G6130A", "A6194G", "A6279T", "C6322T", "A6734G", "T6735A", "A6801G", "G6840A", "A7001-", "T7003-", "A7149C", "T7150A", "A7190G", "A7689G", "G7709A", "A7722G", "G7782A", "A7936G", "A8032G", "A8193G", "G8407A", "A8446G", "A8663G", "C8768T"], "INT": ["T125A"], "RT-p51": ["V60I", "P294T"], "RT-p66": ["V60I", "P294T", "H480Q"], "gp120": ["Q316R", "-329K", "T433N", "N446D"], "gp41": ["E129G", "S160N", "K297R"], "nef": ["R22Q", "Q35R", "E63D"], "p17": ["I82V"], "p6": ["I21V"], "p7": ["Q9P"], "rev": ["K30E", "T62A"], "tat": ["Q76R"], "vif": ["S95R", "K167Q"]}, "labels": {"aa": "INT: T125A; RT-p51: V60I, P294T; RT-p66: V60I, P294T, H480Q; gp120: Q316R, -329K, T433N, N446D; gp41: E129G, S160N, K297R; nef: R22Q, Q35R, E63D; p17: I82V; p6: I21V; p7: Q9P; rev: K30E, T62A; tat: Q76R; vif: S95R, K167Q"}}, "children": [{"name": "MW802825", "node_attrs": {"div": 0.16641000000000003, "accession": "MW802825", "clade_membership": {"value": "CRF89_BF1"}, "country": {"value": "ES"}, "date": {"value": 2018.0}, "Strain_name": {"value": "Z0275"}, "LANL_subtype": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A149C", "T153C", "A161C", "T165G", "T182G", "A217C", "T258G", "C281T", "A286-", "C287-", "T288-", "G289-", "G301A", "G354A", "C486T", "G524A", "T534G", "A562G", "T602C", "G608A", "G641A", "-704G", "-705G", "-706A", "-707C", "-711A", "-712A", "-713A", "-714G", "-715G", "C719T", "A725G", "G818A", "A914G", "C950T", "A1157G", "A1176T", "T1182C", "G1199A", "A1241G", "A1278G", "A1279G", "T1280C", "C1304G", "C1350T", "A1404G", "G1443A", "A1455G", "-1459A", "A1463G", "A1476G", "A1500C", "T1501C", "G1503A", "A1536C", "G1621A", "G1775A", "A1781C", "T1988C", "A2173G", "A2198G", "G2431A", "A2614G", "A2623G", "G2710A", "A2716G", "A2727G", "A2809G", "G2828A", "T2829A", "A2896G", "G2937A", "A2955G", "A2962G", "A2985G", "G3004A", "G3085A", "G3142A", "T3197C", "A3208G", "A3249G", "C3275T", "A3277G", "G3307A", "T3376C", "A3481G", "C3498T", "C3500T", "T3541C", "T3545G", "A3592G", "C3620A", "T3644C", "G3841A", "T3844G", "T3850C", "C4079T", "T4085C", "T4117C", "T4144C", "G4145A", "T4177G", "G4388T", "G4495A", "C4576A", "T4702C", "C4728A", "T4742C", "A4765G", "A4768C", "G4862A", "A4863G", "C4871G", "A4878G", "C4902T", "G4949A", "A4958C", "T4965C", "T5016C", "A5039G", "C5046T", "C5050A", "A5055C", "G5060C", "C5062T", "G5069A", "G5082A", "C5102T", "G5137A", "T5206C", "C5213A", "C5242A", "G5269A", "C5334A", "T5354C", "A5355C", "C5356T", "A5366G", "A5372G", "A5385G", "G5447A", "G5463C", "T5478C", "C5484G", "A5567G", "T5568C", "T5578C", "C5611-", "A5612-", "A5613-", "A5628G", "G5629A", "A5643T", "C5651T", "G5665A", "G5673A", "T5677A", "G5737A", "A5738G", "T5778C", "G5806A", "A5846T", "A5863T", "G5902A", "C5956T", "A5959C", "T6010C", "G6020T", "C6023T", "A6029G", "T6148C", "T6151G", "T6163-", "A6164-", "C6165-", "T6166-", "A6176-", "A6177-", "T6178-", "G6179-", "C6180-", "C6181T", "A6188G", "C6195T", "-6201A", "-6203G", "G6204A", "A6213G", "T6221G", "G6226A", "G6280A", "T6295C", "A6304G", "A6311G", "T6325C", "G6329A", "A6330G", "G6333A", "A6335G", "-6338A", "-6339C", "-6340A", "T6355C", "T6403G", "A6430G", "G6458A", "A6465C", "C6469T", "C6477T", "A6478G", "G6490T", "A6526G", "A6583G", "A6664G", "G6725A", "A6736C", "G6774C", "T6776C", "C6777A", "A6781C", "A6790G", "C6810A", "A6813G", "A6818C", "-6834G", "C6843A", "A6844C", "G6936C", "C6949T", "-6977G", "-6978A", "-6979A", "-6980A", "-6981A", "-6982A", "-6983C", "-6984C", "-6985C", "-6986A", "-6987A", "-6988T", "-6989G", "-6990G", "-6992A", "-6993C", "-6994T", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "T7014C", "A7158C", "T7159A", "A7160G", "-7162T", "A7306T", "A7450T", "G7508C", "A7626T", "G7627A", "A7629G", "G7753A", "C7843T", "G7846A", "G7868A", "T7913C", "A7943G", "G7944T", "G7964A", "A7974G", "G8055A", "A8092T", "A8170G", "A8192C", "T8210C", "A8222G", "G8231A", "T8276G", "T8348G", "A8388G", "G8398A", "A8405G", "A8408G", "T8451A", "G8462A", "T8489C", "C8504T", "G8528A", "A8531T", "G8592T", "G8653A", "G8762A", "G8788A", "C8789T", "T8855C", "A8875G", "C8886A", "G8887T", "G8892A", "G8917T", "C8921T", "C8927T", "G8931A", "G8942A", "A8962G", "G8991A", "G9026A"], "INT": ["M22I", "A124T", "A205S"], "RT-p51": ["K211R", "V245K", "R281K", "K287R", "K297R", "K385R"], "RT-p66": ["K211R", "V245K", "R281K", "K287R", "K297R", "K385R", "S468F", "L484V", "Q509K"], "gp120": ["K35N", "V56L", "L57F", "-109A", "T110N", "-111V", "-113N", "-114N", "-115D", "-116T", "-117L", "-118R", "-119E", "S123A", "K142L", "I153V", "D159S", "T161G", "-162T", "D183E", "D202N", "K204T", "T208M", "K212N", "I243M", "A291T", "E294D", "G307A", "S308Q", "K320R", "G361A", "T366E", "-368P", "-369N", "-370G", "-371T", "T385-", "N435T", "N436D"], "gp41": ["E49D", "V69L", "Q108L", "D109G", "N140S", "A189T", "R214V", "G221R", "E224G", "S251N", "L263F", "T307A", "V310I"], "nef": ["I16V", "R19K", "L37I", "A84S", "R104K", "S149N", "K178R", "R182M", "R192I", "E197K"], "p17": ["V7I", "S67A", "K76R", "A124D", "S125K", "-126G", "-127A", "-129S"], "p2": ["V7I"], "p24": ["S149C", "N183G", "P207S", "S225G"], "p7": ["S4G", "I12P", "V13I", "I24L", "R52K"], "rev": ["I18A", "K32S", "R39K", "T82S", "T108A", "K115T"], "tat": ["S24N", "N64S", "S68P", "G79W"], "vif": ["F39S", "H48N", "E60G", "E61A", "K93E", "I98V", "Y127H", "S144P", "T155K", "K157Q", "K158N", "T159I", "V166I", "R184K"], "vpr": ["P37T", "H77N", "T84L", "S94G"], "vpu": ["Q2T", "P3L", "L4V", "A8T", "L12F", "A15V", "V20I", "S24T", "L27F", "E44R", "V71M", "N80I"]}, "labels": {"aa": "INT: M22I, A124T, A205S; RT-p51: K211R, V245K, R281K, K287R, K297R, K385R; RT-p66: K211R, V245K, R281K, K287R, K297R, K385R, S468F, L484V, Q509K; gp120: K35N, V56L, L57F, -109A, T110N, -111V, -113N, -114N, -115D, -116T, -117L, -118R, -119E, S123A, K142L, I153V, D159S, T161G, -162T, D183E, D202N, K204T, T208M, K212N, I243M, A291T, E294D, G307A, S308Q, K320R, G361A, T366E, -368P, -369N, -370G, -371T, T385-, N435T, N436D; gp41: E49D, V69L, Q108L, D109G, N140S, A189T, R214V, G221R, E224G, S251N, L263F, T307A, V310I; nef: I16V, R19K, L37I, A84S, R104K, S149N, K178R, R182M, R192I, E197K; p17: V7I, S67A, K76R, A124D, S125K, -126G, -127A, -129S; p2: V7I; p24: S149C, N183G, P207S, S225G; p7: S4G, I12P, V13I, I24L, R52K; rev: I18A, K32S, R39K, T82S, T108A, K115T; tat: S24N, N64S, S68P, G79W; vif: F39S, H48N, E60G, E61A, K93E, I98V, Y127H, S144P, T155K, K157Q, K158N, T159I, V166I, R184K; vpr: P37T, H77N, T84L, S94G; vpu: Q2T, P3L, L4V, A8T, L12F, A15V, V20I, S24T, L27F, E44R, V71M, N80I"}}}, {"name": "MW344920", "node_attrs": {"div": 0.17374000000000003, "accession": "MW344920", "clade_membership": {"value": "CRF89_BF1"}, "country": {"value": "ES"}, "date": {"value": 2016.0}, "Strain_name": {"value": "P4464"}, "LANL_subtype": {"value": "CRF89_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T156-", "C207T", "A215G", "T288C", "C369A", "G453A", "G455A", "A516T", "T534A", "C537A", "G595A", "G607A", "A609G", "A678G", "A682G", "A686G", "G689A", "A699C", "G735A", "C830T", "T861G", "A878G", "A941G", "T1001C", "C1005G", "T1046A", "C1133T", "G1192A", "T1214C", "A1217G", "T1299C", "T1310C", "G1394A", "T1403C", "T1444C", "C1447A", "A1448T", "A1449-", "A1450-", "T1451-", "A1452-", "C1453-", "A1454-", "-1459C", "A1474G", "A1494C", "G1495A", "G1498A", "A1525G", "G1588A", "A1614G", "T1646C", "A1687G", "G1734-", "A1735-", "G1736-", "T1741A", "A1743G", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "C1825A", "C1903A", "G1942A", "A1969G", "A2149G", "T2199G", "A2332G", "G2362A", "T2434C", "A2459G", "A2519G", "C2596T", "A2665C", "C2708T", "C2714G", "A2825G", "G2830A", "C2848T", "G2887A", "G2951A", "C2958G", "A2972G", "A3031G", "A3097G", "G3158A", "G3170A", "G3264A", "C3266T", "C3346T", "C3399T", "T3424C", "G3483A", "A3490G", "C3542A", "G3544T", "A3565G", "T3566C", "A3608G", "A3630G", "T3644A", "C3653A", "A3676C", "G3755A", "C3756A", "C3857A", "G3859A", "G3869A", "G3901A", "A3910C", "G3916A", "G3935A", "G3952A", "G3989A", "A4003G", "T4039G", "C4075T", "G4176A", "G4249A", "G4696A", "T4702G", "G4727A", "G4735A", "C4761T", "G4770A", "A4773G", "C4827T", "C4871A", "C4889T", "T4910C", "G5030A", "A5061G", "G5123A", "A5186C", "T5197C", "G5212A", "T5224A", "A5233G", "T5254C", "G5290A", "T5294C", "G5365C", "T5384C", "T5479C", "C5481A", "G5483A", "C5484A", "C5511T", "G5557A", "G5575A", "A5614C", "T5616C", "C5663T", "C5688A", "G5729A", "A5730C", "G5737C", "A5748T", "A5840T", "A5842G", "A5845G", "A5861G", "A5862C", "G5864A", "A5867G", "T5870C", "G5948A", "C5989T", "C6007T", "G6020A", "A6022G", "T6025C", "A6065G", "G6121A", "-6167A", "-6168A", "-6169T", "-6170G", "-6171T", "-6172C", "C6180T", "A6185G", "A6186C", "C6195A", "A6200-", "C6202-", "G6204-", "C6205-", "A6206-", "C6207-", "C6208-", "G6224A", "G6225A", "C6228A", "T6250G", "C6278A", "A6283G", "C6287A", "A6288C", "C6305A", "T6306C", "G6323A", "T6328C", "C6331T", "A6332G", "T6334G", "G6336C", "G6425A", "A6456G", "T6457A", "C6482A", "C6483T", "A6508G", "G6530A", "G6611A", "C6618T", "A6628G", "T6721C", "C6748T", "G6754A", "A6778C", "T6787C", "T6794G", "A6805-", "A6806G", "G6808A", "A6809G", "C6810G", "A6811C", "G6814A", "T6815G", "A6817T", "G6820A", "T6821G", "C6822T", "T6823C", "C6824T", "A6825C", "C6829T", "A6833-", "C6849A", "A6910G", "G6935A", "G6936A", "A6947G", "C6949A", "-6950A", "-6951C", "-6952A", "-6953G", "-6954A", "-6955G", "-6956T", "-6957T", "-6958C", "-6959A", "-6960A", "-6961G", "-6962A", "-6963A", "-6964T", "C6991-", "C7006A", "A7013G", "C7020T", "G7079C", "C7089A", "A7157G", "A7161C", "-7162A", "T7170C", "A7197G", "A7216G", "A7225G", "A7275G", "G7288A", "G7440T", "C7498T", "G7513A", "G7517A", "G7519A", "A7532C", "A7542G", "G7552A", "A7553C", "T7579C", "A7620G", "A7641G", "T7642G", "G7701A", "A7721G", "C7742A", "G7759A", "C7801T", "A7858G", "G7862A", "G7890A", "T7913G", "T7921A", "A7947G", "G7992A", "G7997A", "A7998C", "C8009A", "A8019G", "A8023G", "A8076G", "G8079A", "A8105G", "A8118G", "G8130A", "A8152G", "T8158G", "A8170C", "A8172G", "G8173A", "T8176C", "G8208A", "C8213A", "C8223T", "A8241G", "A8255T", "A8258C", "T8281C", "C8291T", "T8292G", "A8447G", "A8456C", "C8499G", "T8505C", "A8531C", "G8554A", "G8656A", "A8666C", "T8746G", "C8747G", "A8754T", "C8755G", "G8774A", "T8786C", "A8805C", "C8840T", "A8852G", "T8914A", "A8930G", "C8960A", "T8961G", "A8963C", "C8964T", "A8965G", "A8967T", "T8972C", "A9007G", "-9009G", "-9014G", "G9016C"], "INT": ["L28I", "V32I", "V54I", "V72I", "G134D"], "RT-p51": ["V35R", "K122E", "I142V", "Q207E", "I244V", "A286T", "A288G", "I293V", "A355T", "G359S", "R390K", "A435V"], "RT-p66": ["V35R", "K122E", "I142V", "Q207E", "I244V", "A286T", "A288G", "I293V", "A355T", "G359S", "R390K", "A435V", "R463K", "Q483N", "S491P", "I505V", "K512R", "L517I", "Q520K", "K527N", "A554N"], "gp120": ["N3A", "D4N", "N5D", "A32T", "V56M", "E59K", "N71D", "-105N", "-106L", "-107K", "N108E", "T110-", "T112-", "G124K", "A125E", "N132K", "K142M", "H145T", "L151T", "D157N", "N160G", "A191T", "N201R", "P210I", "V226M", "A253T", "T255I", "L314V", "S326-", "N327-", "-328N", "T332K", "G361K", "N365E", "-367E", "-368F", "-369K", "-370N", "-371E", "T387V", "P389L", "A409P", "A412E", "N435D", "N436T", "I439T", "K448R", "K474R"], "gp41": ["V72I", "K77Q", "Q80R", "I84L", "K106R", "D109E", "D113G", "R133K", "N140G", "Q147K", "V187I", "R196K", "L204V", "F206L", "E215G", "G230D", "D232T", "N239S", "H258R", "R259H", "T268A", "E272G", "R276H", "C285W", "Q290R", "S302N", "L304I", "T307I", "E313G", "I318F", "I319L", "L330C"], "nef": ["E38D", "P53A", "R71K", "R105K", "E108D", "F135W", "T138C", "K155Q", "K184E", "F191Y", "C206*", "*207D"], "p17": ["Q12K", "E40K", "I61L", "S67T", "L68I", "C87Y", "R91K", "I92V", "T115A", "Q116R", "K122Q"], "p2": ["V7A", "T8N", "T10-", "A11-", "N12T"], "p24": ["V2I", "S44A", "P92A", "R154K"], "p6": ["N3S", "-23P", "P24S", "S25P", "P49H"], "p7": ["K3R", "R10Q", "R11K", "K20R", "R41K", "T50A"], "pro": ["D35E"], "rev": ["R50N", "A54E", "I59V", "N86S", "I102V", "L104V", "T108P", "V109I"], "tat": ["L3P", "Y35Q", "R36Q", "G61S", "D67N", "N80D"], "vif": ["R37K", "F39C", "R50K", "D62N", "K63E", "T159A"], "vpr": ["D7N", "N28H", "H40Q", "R87T"], "vpu": ["-5V", "A19V", "R41N", "E44Q", "R47I", "D78V", "I79V", "N80D"]}, "labels": {"aa": "INT: L28I, V32I, V54I, V72I, G134D; RT-p51: V35R, K122E, I142V, Q207E, I244V, A286T, A288G, I293V, A355T, G359S, R390K, A435V; RT-p66: V35R, K122E, I142V, Q207E, I244V, A286T, A288G, I293V, A355T, G359S, R390K, A435V, R463K, Q483N, S491P, I505V, K512R, L517I, Q520K, K527N, A554N; gp120: N3A, D4N, N5D, A32T, V56M, E59K, N71D, -105N, -106L, -107K, N108E, T110-, T112-, G124K, A125E, N132K, K142M, H145T, L151T, D157N, N160G, A191T, N201R, P210I, V226M, A253T, T255I, L314V, S326-, N327-, -328N, T332K, G361K, N365E, -367E, -368F, -369K, -370N, -371E, T387V, P389L, A409P, A412E, N435D, N436T, I439T, K448R, K474R; gp41: V72I, K77Q, Q80R, I84L, K106R, D109E, D113G, R133K, N140G, Q147K, V187I, R196K, L204V, F206L, E215G, G230D, D232T, N239S, H258R, R259H, T268A, E272G, R276H, C285W, Q290R, S302N, L304I, T307I, E313G, I318F, I319L, L330C; nef: E38D, P53A, R71K, R105K, E108D, F135W, T138C, K155Q, K184E, F191Y, C206*, *207D; p17: Q12K, E40K, I61L, S67T, L68I, C87Y, R91K, I92V, T115A, Q116R, K122Q; p2: V7A, T8N, T10-, A11-, N12T; p24: V2I, S44A, P92A, R154K; p6: N3S, -23P, P24S, S25P, P49H; p7: K3R, R10Q, R11K, K20R, R41K, T50A; pro: D35E; rev: R50N, A54E, I59V, N86S, I102V, L104V, T108P, V109I; tat: L3P, Y35Q, R36Q, G61S, D67N, N80D; vif: R37K, F39C, R50K, D62N, K63E, T159A; vpr: D7N, N28H, H40Q, R87T; vpu: -5V, A19V, R41N, E44Q, R47I, D78V, I79V, N80D"}}}]}]}]}]}, {"name": "results/subtype_trees/CRF12_BF.nwk", "node_attrs": {"div": 0.10679000000000002, "clade_membership": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["G641T", "A2498G", "A5491G", "C5569A", "A5739T", "-6167A", "-6170G", "-6172C", "G6339C", "T6898C", "-6993C", "-7002A", "T7250C", "A7269G", "G7276A", "A7280C", "G7281A", "G7549A", "A7553C", "T7561C", "C7590A", "T7597C", "T7603C", "A7604T", "T7642G", "G8656A"], "RT-p51": ["K122E", "I135V"], "RT-p66": ["K122E", "I135V"], "gp120": ["N436K", "K472R", "R476Q", "Q479K"], "gp41": ["I84L", "T96N", "T101S"], "nef": ["R105K"], "tat": ["I39A", "H65N"], "vpu": ["P3S", "E44D", "F74L", "N80D"]}, "labels": {"aa": "RT-p51: K122E, I135V; RT-p66: K122E, I135V; gp120: N436K, K472R, R476Q, Q479K; gp41: I84L, T96N, T101S; nef: R105K; tat: I39A, H65N; vpu: P3S, E44D, F74L, N80D", "clade": "CRF12_BF"}}, "children": [{"name": "MT712270", "node_attrs": {"div": 0.16195000000000004, "accession": "MT712270", "clade_membership": {"value": "CRF12_BF"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "10_097"}, "LANL_subtype": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["G265A", "A303T", "A359G", "A388G", "G407A", "T473A", "T476C", "C483T", "T495C", "A510C", "C531T", "A545G", "A561C", "G562A", "T570C", "T595G", "T602C", "G608T", "G609A", "T635C", "C645A", "G648A", "A653G", "A660G", "G667A", "G677A", "T749C", "C767T", "G770A", "A776G", "G806A", "A812G", "T824A", "G837A", "T861G", "G870T", "T897C", "A903T", "C926T", "A998G", "T1052C", "T1055C", "C1060A", "T1064C", "A1073G", "A1089G", "C1091T", "A1145G", "C1178T", "T1181A", "G1192A", "A1242T", "C1243G", "C1245T", "T1280A", "C1292A", "C1295T", "G1298A", "T1299C", "G1311T", "A1319C", "G1346A", "C1350A", "A1352G", "G1404A", "A1418G", "T1444C", "A1452G", "A1455G", "T1457A", "-1458G", "-1459C", "-1460C", "G1461A", "A1474G", "G1495A", "T1501A", "G1503A", "T1505C", "C1514T", "T1517C", "A1536C", "A1543G", "A1565G", "T1583C", "G1640A", "A1656C", "C1670T", "A1687G", "G1697A", "G1709A", "T1724C", "A1733G", "G1773A", "A1774C", "C1825A", "C1826G", "C1903A", "A1906G", "A1927G", "T1954A", "G1972A", "A1988T", "A2002G", "G2027A", "A2275G", "C2281T", "A2314G", "A2317G", "A2320G", "A2344G", "T2347C", "A2368G", "G2392T", "A2407G", "A2410G", "A2419G", "A2459G", "C2488T", "A2508C", "T2520C", "A2599G", "C2626A", "A2627C", "A2629G", "C2671T", "A2693G", "A2699G", "T2735C", "C2749T", "A2752G", "G2821A", "G2828A", "G2830A", "A2842G", "A2846T", "G2914A", "A2923G", "G2926A", "T2935C", "G2937A", "C2941T", "A2972G", "C2976A", "A2985G", "C3067A", "A3151G", "G3162A", "A3192G", "G3211A", "A3221G", "A3230G", "G3250A", "C3252T", "T3253C", "G3264A", "A3268G", "T3276A", "T3292C", "G3307A", "T3310C", "A3316G", "C3319T", "C3368T", "C3394T", "A3402G", "A3403T", "T3431G", "C3445T", "A3449G", "T3469C", "A3488C", "C3492T", "C3496T", "C3511T", "C3535T", "G3544A", "G3557A", "C3577T", "A3675T", "A3676G", "A3684G", "G3686A", "C3688T", "A3715G", "G3718A", "A3727G", "A3770G", "G3775A", "G3787A", "A3808C", "C3857A", "G3859A", "C3863G", "G3901A", "A3961G", "G4021A", "T4039C", "A4057G", "C4075T", "A4081C", "T4126C", "C4149T", "G4150A", "T4165C", "A4174G", "G4176A", "T4198C", "G4268A", "C4321T", "A4333G", "T4388G", "A4391T", "G4407A", "A4433G", "A4552G", "A4570T", "T4585C", "A4591C", "A4642G", "G4673A", "G4677A", "T4701G", "G4708A", "A4709G", "T4717A", "G4727A", "C4728A", "A4739G", "T4742C", "A4773G", "G4779A", "T4828A", "C4857A", "G4859A", "A4863G", "G4865A", "A4878G", "A4911T", "T4914C", "T4932G", "T4938A", "A4952T", "T4959C", "A4969G", "A4971G", "C4988T", "T5028C", "T5073C", "A5085C", "A5089T", "T5095C", "G5121A", "G5128A", "A5148T", "T5182C", "A5187G", "G5226A", "A5325G", "C5342T", "G5382A", "C5383A", "A5395G", "T5415C", "C5425A", "A5426G", "A5431G", "C5444A", "G5447A", "T5451C", "C5461G", "G5462A", "G5484A", "C5490T", "T5492C", "A5496G", "A5499G", "A5545C", "G5548C", "A5556G", "G5557A", "A5566G", "C5567A", "T5578C", "C5602A", "A5607G", "G5620C", "A5622G", "T5677A", "T5684C", "A5704C", "T5707G", "T5708C", "G5717A", "A5718G", "G5747T", "A5805C", "-5825C", "-5826T", "C5834T", "A5845C", "A5848G", "A5856G", "C5859T", "A5865G", "C5884T", "T5953C", "G5954A", "T5964C", "C5974A", "A6008G", "A6009C", "G6023A", "T6024A", "G6029A", "A6030C", "A6044G", "T6046G", "G6050A", "A6065G", "C6087A", "T6100C", "T6109A", "C6115T", "G6130A", "A6142C", "T6160C", "-6168G", "-6171T", "C6187G", "A6188G", "-6195T", "C6196T", "A6197C", "C6198A", "T6199A", "-6201A", "C6202T", "-6213A", "A6262G", "T6279G", "G6280A", "A6304G", "C6322G", "A6323G", "A6330G", "C6331A", "G6333C", "T6334A", "A6335-", "G6336-", "A6337-", "A6338-", "C6339-", "T6358C", "C6364T", "G6379A", "T6403A", "A6438T", "T6457G", "A6461G", "G6466T", "C6469T", "G6478A", "C6487T", "A6489G", "A6508G", "A6525G", "G6532A", "C6559T", "C6563T", "G6572A", "A6581G", "T6607C", "A6639G", "G6649A", "T6676C", "-6688T", "-6689A", "-6690T", "-6691A", "-6692A", "-6693G", "T6694A", "A6712G", "G6714A", "C6745T", "C6748T", "A6753G", "G6767A", "A6776G", "C6777A", "A6785G", "A6786G", "A6788C", "G6797A", "A6798C", "G6802A", "A6807G", "G6808A", "-6809A", "C6810A", "G6814A", "A6817G", "A6818G", "A6825T", "-6830C", "-6831C", "-6832T", "-6833A", "-6834A", "T6838C", "C6843A", "A6849G", "A6859G", "T6883C", "A6907G", "-6947G", "-6948A", "-6949C", "-6950A", "-6951C", "-6979A", "-6980A", "-6981G", "-6982A", "-6983G", "-6984A", "-6985A", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "C6991A", "-6992A", "-6994A", "-6995G", "-6996T", "-6997A", "-6998A", "-6999G", "-7000A", "C7006A", "C7025A", "G7040A", "A7046C", "C7078T", "G7079C", "A7094G", "C7096A", "A7126G", "A7151G", "A7154G", "A7155G", "A7160G", "A7161G", "-7162T", "G7183A", "A7190G", "T7192C", "A7197G", "A7241G", "T7243A", "G7256A", "G7270T", "A7290G", "A7313C", "G7315A", "C7327T", "G7340A", "A7342C", "A7366G", "A7376G", "T7433C", "G7441A", "C7463A", "C7474T", "C7582T", "C7605A", "T7624C", "G7640C", "G7658C", "C7678T", "A7690G", "A7700G", "G7701A", "G7712A", "A7713T", "T7796A", "C7801T", "G7873A", "A7921G", "T7930C", "A7931T", "G7961A", "A7962G", "G7965A", "G7992A", "A8029G", "G8030C", "A8032T", "T8035C", "G8055A", "C8103T", "A8105G", "G8173A", "A8180G", "G8245A", "A8263G", "G8276A", "C8291A", "G8329A", "T8337A", "T8366C", "G8368A", "T8369G", "C8382T", "C8386A", "T8387A", "G8402A", "C8411T", "C8413G", "T8414A", "A8426T", "G8441A", "T8444C", "A8446G", "T8451C", "A8453G", "A8457G", "G8458A", "A8459G", "G8462T", "G8465A", "T8471C", "C8477T", "T8486A", "A8487C", "G8488C", "G8490A", "C8492T", "T8495C", "G8507A", "C8514T", "A8531G", "T8546C", "C8552T", "T8582C", "T8594C", "A8597G", "A8617G", "A8636T", "A8653G", "C8715G", "G8717T", "G8787A", "A8788G", "A8804G", "C8831T", "A8847G", "G8848C", "A8852G", "G8871C", "A8874G", "G8885A", "A8892C", "G8905A", "G8917A", "C8921T", "A8924C", "G8945C", "C8952A", "G8997-", "-9009T", "C9012G", "G9013C", "-9014G", "T9025G", "C9041T", "C9078T", "T9109C"], "INT": ["E11D", "L28I", "P30A", "A125V", "G134D", "V165I", "S205A", "T206S", "R211K", "I220V"], "RT-p51": ["D123E", "E138A", "I142T", "D177E", "I178L", "T200A", "I202V", "F214L", "V245I", "S251C", "R281K", "I293V", "P294Q", "K297R", "D324E", "R356K", "K366R", "T376A", "S379G", "T386I", "R390K", "L394Q", "E436G"], "RT-p66": ["D123E", "E138A", "I142T", "D177E", "I178L", "T200A", "I202V", "F214L", "V245I", "S251C", "R281K", "I293V", "P294Q", "K297R", "D324E", "R356K", "K366R", "T376A", "S379G", "T386I", "R390K", "L394Q", "E436G", "S446A", "K452E", "K465Q", "A466V", "D488N", "K527M", "K530R", "V531I", "I559V"], "gp120": ["N1S", "A2V", "E4G", "D34K", "V37A", "N52A", "V57N", "E59T", "N64E", "N71D", "T78K", "D85E", "-105S", "-106L", "-107K", "N108E", "L142R", "I156M", "N157D", "D159G", "N160T", "S161-", "S162-", "D183E", "Y195F", "N201K", "K203E", "K204N", "K212R", "K224R", "E240K", "I243V", "E262G", "-280R", "R287Q", "K300R", "V305I", "T308E", "N311G", "K312Q", "E315T", "K318R", "-319K", "K322E", "H324L", "-328N", "-329T", "T330K", "K332R", "-367R", "-368E", "-369N", "-370E", "-371T", "-372V", "-373F", "-374R", "-375N", "-376E", "V396I", "M398L", "A409P", "N414E", "N433G", "N434G", "K436G", "N446D", "K448R", "I463V", "V468I", "R472S", "K479R"], "gp41": ["M4L", "G13S", "T25A", "N42S", "S101Y", "D113Q", "E119Q", "E129K", "R133E", "E137I", "S165T", "I210F", "E220R", "G221E", "G230D", "A243P", "S251N", "A267V", "T268A", "S293G", "A325I", "L330I", "L345Q"], "nef": ["S9K", "P14S", "M20I", "P24G", "E28D", "Q35R", "R39E", "R49P", "A50T", "V85L", "K92R", "E98D", "K104R", "Q125D", "D149S", "S169A", "D177H", "R178G", "K184Q", "R188H", "R192K", "E201D", "Q204K"], "p1": ["N9H"], "p17": ["K18R", "S54P", "K59Q", "P66S", "R76Q", "Y79H", "F87C", "K91N", "V92I", "L104I", "E105K", "N109D", "S111N", "T115N"], "p2": ["V7A", "T10S", "V12A", "V13I"], "p24": ["V36I", "S44A", "A47S", "T58S", "T110N", "S120G", "R154K", "T171C", "N183G", "D187E", "A194S", "P207T", "G225S"], "p6": ["N3S", "D32T", "P49Q"], "p7": ["K3R", "R10K", "I12N", "V13I", "I24L", "K26R"], "pro": ["L10V", "D35E", "I36M", "I64L", "V77I"], "rev": ["E10D", "E11D", "K14R", "L18I", "Y28L", "R38Q", "S61A", "T62S", "Y63H", "N86S", "V109I", "E111G"], "tat": ["L3I", "N7D", "Q17R", "T19A", "T23N", "R29E", "A58P", "G61S", "T64D", "S68P", "I74T", "K85E", "E86K"], "vif": ["E2A", "N19S", "M29I", "V31I", "F39V", "R41K", "F44Y", "H48N", "K63E", "V65I", "L81Q", "Q91K", "R93G", "I98V", "I109L", "Y110H", "S116A", "S118T", "K122N", "K128R", "I129V", "K167Q", "K168I", "V170A", "E179K", "R181K", "T188S"], "vpr": ["G6E", "Y15F", "N28S", "S41N", "I74V", "A93N"], "vpu": ["S24T", "V26A", "L27F", "I33L", "L34A", "R37K", "R47I", "-69D", "E70-", "P76L", "D80H", "N81D"]}, "labels": {"aa": "INT: E11D, L28I, P30A, A125V, G134D, V165I, S205A, T206S, R211K, I220V; RT-p51: D123E, E138A, I142T, D177E, I178L, T200A, I202V, F214L, V245I, S251C, R281K, I293V, P294Q, K297R, D324E, R356K, K366R, T376A, S379G, T386I, R390K, L394Q, E436G; RT-p66: D123E, E138A, I142T, D177E, I178L, T200A, I202V, F214L, V245I, S251C, R281K, I293V, P294Q, K297R, D324E, R356K, K366R, T376A, S379G, T386I, R390K, L394Q, E436G, S446A, K452E, K465Q, A466V, D488N, K527M, K530R, V531I, I559V; gp120: N1S, A2V, E4G, D34K, V37A, N52A, V57N, E59T, N64E, N71D, T78K, D85E, -105S, -106L, -107K, N108E, L142R, I156M, N157D, D159G, N160T, S161-, S162-, D183E, Y195F, N201K, K203E, K204N, K212R, K224R, E240K, I243V, E262G, -280R, R287Q, K300R, V305I, T308E, N311G, K312Q, E315T, K318R, -319K, K322E, H324L, -328N, -329T, T330K, K332R, -367R, -368E, -369N, -370E, -371T, -372V, -373F, -374R, -375N, -376E, V396I, M398L, A409P, N414E, N433G, N434G, K436G, N446D, K448R, I463V, V468I, R472S, K479R; gp41: M4L, G13S, T25A, N42S, S101Y, D113Q, E119Q, E129K, R133E, E137I, S165T, I210F, E220R, G221E, G230D, A243P, S251N, A267V, T268A, S293G, A325I, L330I, L345Q; nef: S9K, P14S, M20I, P24G, E28D, Q35R, R39E, R49P, A50T, V85L, K92R, E98D, K104R, Q125D, D149S, S169A, D177H, R178G, K184Q, R188H, R192K, E201D, Q204K; p1: N9H; p17: K18R, S54P, K59Q, P66S, R76Q, Y79H, F87C, K91N, V92I, L104I, E105K, N109D, S111N, T115N; p2: V7A, T10S, V12A, V13I; p24: V36I, S44A, A47S, T58S, T110N, S120G, R154K, T171C, N183G, D187E, A194S, P207T, G225S; p6: N3S, D32T, P49Q; p7: K3R, R10K, I12N, V13I, I24L, K26R; pro: L10V, D35E, I36M, I64L, V77I; rev: E10D, E11D, K14R, L18I, Y28L, R38Q, S61A, T62S, Y63H, N86S, V109I, E111G; tat: L3I, N7D, Q17R, T19A, T23N, R29E, A58P, G61S, T64D, S68P, I74T, K85E, E86K; vif: E2A, N19S, M29I, V31I, F39V, R41K, F44Y, H48N, K63E, V65I, L81Q, Q91K, R93G, I98V, I109L, Y110H, S116A, S118T, K122N, K128R, I129V, K167Q, K168I, V170A, E179K, R181K, T188S; vpr: G6E, Y15F, N28S, S41N, I74V, A93N; vpu: S24T, V26A, L27F, I33L, L34A, R37K, R47I, -69D, E70-, P76L, D80H, N81D"}}}, {"name": "CRF12_BF_NODE_0000001", "node_attrs": {"div": 0.11153000000000002, "clade_membership": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A2464T", "G4262A", "T5686C", "A5845G", "C5958G", "-6173A", "-6174A", "A6194G", "-6195G", "C6207G", "C6209A", "T6210C", "A6212-", "T6325C", "-6340A", "A6819G", "T6876C", "G7152A", "-7162G", "A7165T", "C7289A", "G7995A", "C8585T", "A8887T"], "gp120": ["T35R", "P123-", "-319A", "K322R", "L341P"], "gp41": ["M54L", "R231K"], "tat": ["R36L"], "vpu": ["P73L"]}, "labels": {"aa": "gp120: T35R, P123-, -319A, K322R, L341P; gp41: M54L, R231K; tat: R36L; vpu: P73L"}}, "children": [{"name": "JN235963", "node_attrs": {"div": 0.13878000000000001, "accession": "JN235963", "clade_membership": {"value": "CRF12_BF"}, "country": {"value": "UY"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UY_TRA0129"}, "LANL_subtype": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A378G", "G379C", "A404G", "T426A", "A428G", "A431G", "A435C", "G438A", "A461C", "A474G", "A485T", "T486C", "T495G", "A509G", "G520C", "A530T", "C583T", "C590T", "T610A", "A632T", "C662G", "C679G", "G703-", "-715A", "A724G", "T773C", "G809A", "G810A", "C1013A", "A1025G", "T1037C", "G1277A", "G1278A", "G1279A", "T1322C", "G1354C", "G1355A", "A1370G", "T1427A", "A1442G", "A1455T", "T1501A", "G1503A", "A1536C", "A1543G", "A1601G", "A1644G", "T1646C", "G1664A", "G1709A", "T1724C", "A1742G", "G1773A", "C1826A", "C1985T", "T1986C", "G2023A", "G2027A", "A2224G", "A2230G", "A2407G", "C2420T", "C2452A", "A2459G", "C2503T", "T2608C", "T2620C", "A2695G", "T2788G", "T2800C", "A2881G", "G2887A", "G2914A", "A2923G", "C2942A", "G3094A", "T3172A", "C3252T", "G3264A", "C3322A", "G3442A", "A3447G", "A3487G", "C3535A", "T3559C", "G3574A", "A3607G", "A3674C", "A3715G", "G3718A", "A3733G", "C3773T", "G3805A", "A3862G", "C3922T", "C4079T", "A4120C", "C4130A", "G4263A", "C4444T", "G4664A", "G4673A", "T4703C", "A4769T", "A4937C", "C4965T", "A4969G", "G4981A", "G5030A", "T5081C", "C5125T", "C5162A", "C5221T", "A5287C", "A5305G", "T5336G", "G5370A", "C5397T", "A5453T", "T5466C", "G5483T", "C5490T", "T5492C", "A5545C", "G5546C", "G5558A", "A5566G", "A5619T", "G5620C", "T5677A", "C5727T", "A5733G", "T5739C", "G5784A", "C5797T", "A5805T", "A5806C", "-5812C", "-5813T", "-5814T", "C5824-", "A5865G", "T5869G", "T5870C", "G5902A", "A5907G", "A5956T", "G5962A", "A6030G", "G6050A", "A6065G", "A6164G", "-6168A", "G6170A", "-6171T", "-6175T", "G6179A", "C6180G", "T6184C", "A6185C", "C6187G", "A6200C", "-6201A", "C6202A", "A6203G", "G6204A", "C6205G", "G6211C", "-6212C", "-6213T", "G6215A", "A6216G", "A6217G", "C6221A", "C6228A", "C6233A", "C6287A", "G6303A", "G6333A", "A6338T", "A6371C", "T6395A", "T6403C", "G6458A", "A6464G", "A6508G", "T6551C", "G6566T", "A6573G", "G6575A", "C6631T", "G6644A", "G6649A", "A6664G", "A6679C", "-6688T", "-6689A", "-6690T", "-6691A", "-6692C", "-6693A", "C6713A", "A6728C", "T6760C", "T6766C", "C6779A", "A6781G", "A6788G", "C6800A", "A6801G", "A6807G", "-6809G", "A6812G", "-6833C", "-6834C", "T6838A", "A6839G", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "-6992A", "-6994A", "-6995G", "-6996T", "-6997A", "-6998T", "-6999C", "-7000C", "A7005G", "G7040A", "G7079A", "C7080A", "A7151G", "T7153A", "A7155C", "A7160C", "A7313C", "G7315A", "C7328A", "A7373G", "G7440A", "A7470G", "G7519A", "T7588C", "C7645T", "A7668G", "G7672A", "A7688G", "T7703C", "G7709C", "G7712A", "A7714G", "A7747T", "G7759C", "T7774C", "C7801A", "C7852T", "T7912C", "A7921G", "A7929T", "A7931C", "C7988A", "A7989G", "A8019C", "G8055A", "A8076G", "G8079T", "A8092C", "C8093A", "C8095A", "G8098A", "A8105G", "A8119C", "C8120-", "T8121-", "T8122-", "C8123A", "T8124G", "G8130T", "C8131G", "G8133A", "A8152G", "T8156C", "G8157T", "T8159G", "C8168A", "T8169C", "A8170G", "A8172T", "A8196G", "C8213T", "T8218C", "T8277C", "G8329A", "G8335A", "T8366G", "T8375G", "C8413T", "T8440C", "G8441A", "A8446G", "G8462A", "C8491A", "T8505G", "C8606T", "A8636T", "A8642G", "C8648T", "G8666A", "A8806G", "G8864T", "A8874G", "G8905T", "G8942A", "A9007G", "-9009C", "C9012-", "G9013-", "G9015-", "T9025G", "C9041T", "T9115C"], "INT": ["P119T", "G163K"], "RT-p51": ["L283I", "T386I", "R390K"], "RT-p66": ["L283I", "T386I", "R390K", "K451R", "H480Q", "K527Q"], "gp120": ["E4G", "N5K", "K18R", "E59G", "N71D", "N108-", "E122-", "A125E", "Q127K", "H145N", "R150K", "S161R", "I173L", "S181T", "D202N", "K204E", "A238S", "E240G", "D241N", "V264I", "-280H", "T292P", "Q309K", "K312E", "Q316R", "K318R", "K320E", "N327K", "-328A", "D365-", "T366-", "-378N", "-379D", "-380T", "-381V", "-382S", "-383N", "-384G", "V396I", "A409N", "N432G", "N433H", "N434S", "K436E"], "gp41": ["M4L", "L9I", "I24V", "N42S", "R46K", "Q56R", "D113E", "K122R", "E136Q", "E137K", "E148D", "L152F", "N166K", "H209L", "I210L", "Q229R", "N239T", "S251N", "H258R", "R259L", "L263F", "L264I", "T268A", "E272D", "L273R", "L274G", "G275L", "R276K", "R277G", "W285L", "W286G", "L289T", "Q290L", "N298S", "L304F"], "nef": ["S8R", "E15A", "V33A", "Q35R", "A50D", "L55V", "V85L", "E98D", "K155R", "E174D", "R178G", "K182M", "R188L"], "p1": ["I5V"], "p17": ["R15A", "L31M", "I34L", "V35I", "E42D", "N47D", "S54A", "G62A", "Q65H", "A83V", "V92E", "E99D", "N109K", "T115R", "G123E", "Q130R"], "p2": ["A11S", "V13-"], "p24": ["V27I", "G208A"], "p6": ["I21M", "D32N"], "p7": ["I12N", "V13I", "I24L", "K26R"], "pro": ["L10I", "L63S", "V77I"], "rev": ["E10D", "E11Q", "A15T", "Y28S", "A47E", "E57D", "T82H", "L83I", "D84N", "N86S", "T91Q", "S92G", "G93T", "T94E", "Q95G", "V97L", "I102V", "L103S", "V104G", "P107H", "T108A"], "tat": ["K24R", "Y26F", "R57P", "G61D", "T64A", "I74F"], "vif": ["M29I", "E61D", "E117D", "H127Y", "K128R", "R132K", "T180I", "H192Q"], "vpr": ["L20I", "H77Q", "V89I"], "vpu": ["L4F", "S24T", "A61E", "L67F", "-69D", "E70L", "M71-"]}, "labels": {"aa": "INT: P119T, G163K; RT-p51: L283I, T386I, R390K; RT-p66: L283I, T386I, R390K, K451R, H480Q, K527Q; gp120: E4G, N5K, K18R, E59G, N71D, N108-, E122-, A125E, Q127K, H145N, R150K, S161R, I173L, S181T, D202N, K204E, A238S, E240G, D241N, V264I, -280H, T292P, Q309K, K312E, Q316R, K318R, K320E, N327K, -328A, D365-, T366-, -378N, -379D, -380T, -381V, -382S, -383N, -384G, V396I, A409N, N432G, N433H, N434S, K436E; gp41: M4L, L9I, I24V, N42S, R46K, Q56R, D113E, K122R, E136Q, E137K, E148D, L152F, N166K, H209L, I210L, Q229R, N239T, S251N, H258R, R259L, L263F, L264I, T268A, E272D, L273R, L274G, G275L, R276K, R277G, W285L, W286G, L289T, Q290L, N298S, L304F; nef: S8R, E15A, V33A, Q35R, A50D, L55V, V85L, E98D, K155R, E174D, R178G, K182M, R188L; p1: I5V; p17: R15A, L31M, I34L, V35I, E42D, N47D, S54A, G62A, Q65H, A83V, V92E, E99D, N109K, T115R, G123E, Q130R; p2: A11S, V13-; p24: V27I, G208A; p6: I21M, D32N; p7: I12N, V13I, I24L, K26R; pro: L10I, L63S, V77I; rev: E10D, E11Q, A15T, Y28S, A47E, E57D, T82H, L83I, D84N, N86S, T91Q, S92G, G93T, T94E, Q95G, V97L, I102V, L103S, V104G, P107H, T108A; tat: K24R, Y26F, R57P, G61D, T64A, I74F; vif: M29I, E61D, E117D, H127Y, K128R, R132K, T180I, H192Q; vpr: L20I, H77Q, V89I; vpu: L4F, S24T, A61E, L67F, -69D, E70L, M71-"}}}, {"name": "CRF12_BF_NODE_0000002", "node_attrs": {"div": 0.11707000000000002, "clade_membership": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["T258C", "-280G", "-304A", "-305A", "T467C", "C471G", "G771T", "G911A", "T2449C", "A5576T", "G5948T", "A6793G", "T7170C", "G7322T", "A7690T", "C8103T", "C8386A", "G8412C", "G8458A", "T8972C"], "gp120": ["A32S", "D34E", "N66D", "I439T"], "gp41": ["V7L", "E129N", "A267V"], "nef": ["R39N"], "p17": ["L46V"], "tat": ["A39V", "D67V"], "vpu": ["Q5V"]}, "labels": {"aa": "gp120: A32S, D34E, N66D, I439T; gp41: V7L, E129N, A267V; nef: R39N; p17: L46V; tat: A39V, D67V; vpu: Q5V"}}, "children": [{"name": "AF385936", "node_attrs": {"div": 0.14436000000000002, "accession": "AF385936", "clade_membership": {"value": "CRF12_BF"}, "country": {"value": "AR"}, "date": {"value": 1999.0}, "Strain_name": {"value": "ARMA159"}, "LANL_subtype": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A14G", "T24A", "G112A", "C114T", "T155C", "A224G", "A369G", "A398G", "A515T", "A571T", "T595G", "G609A", "T641G", "G677A", "A725G", "T771C", "A797C", "G908A", "C926T", "A968C", "G1173A", "T1174C", "G1278A", "G1279A", "C1350T", "G1430A", "T1444C", "A1450G", "A1455G", "A1464C", "A1480G", "G1487T", "G1527A", "A1528C", "G1552A", "C1556T", "G1588A", "A1614C", "C1749T", "A1762G", "T1783A", "C1833T", "A1982G", "G2027A", "T2041G", "T2365G", "A2380G", "G2422A", "T2440C", "A2459G", "A2463C", "A2495T", "T2520C", "A2551G", "T2597C", "A2623G", "C2671T", "A2695G", "G2710A", "A2815G", "T2860C", "G2887A", "A2923G", "A3080G", "C3100T", "T3118C", "A3120T", "T3172G", "G3205A", "A3221G", "A3229G", "G3264A", "G3340A", "G3438A", "G3477A", "C3492T", "G3508A", "C3535T", "C3542T", "G3544C", "G3574A", "C3610T", "A3637G", "A3651G", "A3715G", "A3760G", "A3761G", "T3967C", "G3989A", "T3990C", "T4015C", "C4140T", "G4148A", "C4149T", "G4183A", "A4219G", "A4264C", "A4303G", "A4535G", "A4558C", "T4585C", "G4767A", "A4773G", "T4805G", "A4806C", "A4900G", "G4949A", "A5042T", "G5060A", "A5090G", "A5096G", "G5114C", "G5121A", "T5206C", "A5225G", "A5236G", "A5278G", "T5336G", "T5357G", "A5373C", "T5403G", "T5415C", "C5425A", "A5431T", "G5447A", "C5482T", "T5562C", "T5576C", "A5601G", "A5621T", "T5624C", "A5659T", "T5672C", "C5686T", "C5688A", "A5718G", "C5797T", "A5806C", "-5812C", "-5813T", "-5814T", "C5824-", "A5959G", "A5983C", "C6007A", "C6165G", "-6168A", "-6171C", "C6172T", "-6175T", "G6179A", "C6180A", "C6181T", "A6182G", "T6184C", "A6186C", "C6187T", "A6188G", "-6201A", "G6204A", "G6207C", "A6209C", "C6210T", "-6212G", "-6213A", "G6263A", "G6274A", "A6316G", "A6323G", "A6324G", "C6325T", "A6330G", "A6335G", "G6336A", "C6377T", "G6425A", "A6443C", "A6488C", "A6520G", "C6586T", "T6598C", "G6611A", "A6628T", "C6631T", "T6655C", "-6697A", "-6698C", "-6699A", "-6700G", "-6701T", "-6702T", "A6715G", "A6742G", "C6748T", "A6776G", "A6786G", "T6794G", "-6809G", "G6820A", "T6826A", "T6835-", "C6840A", "-6947G", "-6948A", "-6949T", "-6950A", "-6951C", "-6952A", "-6953A", "-6954T", "-6955A", "-6956T", "-6957C", "-6958C", "-6959A", "-6960A", "-6961T", "-6962G", "-6963A", "-6964T", "-6965A", "-6966C", "-6967T", "C6991-", "C6993-", "A7001-", "A7002-", "T7003-", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "C7014T", "C7025A", "G7026A", "A7046C", "C7089A", "A7151G", "T7153G", "A7155C", "A7160C", "G7168A", "A7234G", "A7290C", "G7315A", "A7366G", "A7373G", "A7375G", "G7426A", "G7428A", "T7432C", "A7439C", "G7440A", "A7583G", "G7633A", "G7640A", "G7642T", "G7658C", "A7688C", "A7692C", "A7714T", "C7801A", "A7818G", "A7998T", "C8026A", "A8029G", "G8030A", "C8065T", "A8099G", "A8184G", "A8241G", "A8258T", "G8276A", "A8288G", "A8297G", "T8298C", "A8309G", "C8320A", "T8366C", "T8387G", "A8400T", "A8459C", "A8503C", "A8522G", "A8555G", "A8584T", "A8597C", "C8603T", "C8648T", "G8682A", "A8739G", "A8746T", "T8747G", "G8759T", "A8794T", "G8864A", "G8888A", "A8912G", "G8915A", "A8922T", "G8935A", "G8942A", "T8947G", "C8948G", "C8951T", "C8952A", "A9099G", "T9109A"], "INT": ["V72T", "T122I", "A125M", "G163S", "N254D"], "RT-p51": ["D123A", "S134C", "I142T", "I329V", "Y342F", "T376A", "R390K"], "RT-p66": ["D123A", "S134C", "I142T", "I329V", "Y342F", "T376A", "R390K", "R448K", "R461K", "A466V", "Q483Y", "N519S", "I556V"], "gp120": ["T104-", "N108-", "-123P", "V137I", "N157G", "D159G", "N160S", "S161E", "S162T", "Q175*", "A191T", "I197L", "K212Q", "A253T", "I281-", "-282Q", "-283L", "T308A", "N311S", "L314V", "H324Q", "P326-", "N327-", "-328N", "-329K", "-367I", "-368S", "-369N", "-384D", "T387I", "R391K", "M398L", "A412E", "N433E", "N434T", "K436Q", "K479T"], "gp41": ["M4I", "I24V", "R46Q", "T94A", "D113N", "E119Q", "N129H", "E130A", "E137D", "N166K", "K172R", "D232V", "F241L", "A243T", "I266V", "Q294R", "E313G", "I319L", "A325I", "I329V", "I332A", "I336V"], "nef": ["M20L", "D54A", "Y81F", "V85F", "V114I", "I133V", "Y135L", "L139F", "E151V", "K182I", "I194L", "R198K", "F202W", "Q204K"], "p17": ["K12E", "Y79F", "F87C", "V92I", "D102E"], "p2": ["V7A", "N9S", "V13L"], "p24": ["A14P", "E79D", "V148T", "P207S"], "p6": ["P23S", "Q28R", "L35Q", "Q52*"], "p7": ["N5S", "K7N", "E21T", "R29K", "R41K", "T50P"], "pro": ["T12I", "I62V", "V77I"], "rev": ["V16A", "I21L", "R50S", "L60I", "S61D", "L73F", "D84G"], "tat": ["D9E", "Q17K", "T19S", "L36W", "V67A"], "vif": ["E61K", "K63E", "H73Q", "T74P", "Q105R", "K176N", "E179K"], "vpr": ["A4P", "G6E", "S41G", "H77Q", "I84M"], "vpu": ["I6T", "I18L", "V22A", "L67F", "M71L"]}, "labels": {"aa": "INT: V72T, T122I, A125M, G163S, N254D; RT-p51: D123A, S134C, I142T, I329V, Y342F, T376A, R390K; RT-p66: D123A, S134C, I142T, I329V, Y342F, T376A, R390K, R448K, R461K, A466V, Q483Y, N519S, I556V; gp120: T104-, N108-, -123P, V137I, N157G, D159G, N160S, S161E, S162T, Q175*, A191T, I197L, K212Q, A253T, I281-, -282Q, -283L, T308A, N311S, L314V, H324Q, P326-, N327-, -328N, -329K, -367I, -368S, -369N, -384D, T387I, R391K, M398L, A412E, N433E, N434T, K436Q, K479T; gp41: M4I, I24V, R46Q, T94A, D113N, E119Q, N129H, E130A, E137D, N166K, K172R, D232V, F241L, A243T, I266V, Q294R, E313G, I319L, A325I, I329V, I332A, I336V; nef: M20L, D54A, Y81F, V85F, V114I, I133V, Y135L, L139F, E151V, K182I, I194L, R198K, F202W, Q204K; p17: K12E, Y79F, F87C, V92I, D102E; p2: V7A, N9S, V13L; p24: A14P, E79D, V148T, P207S; p6: P23S, Q28R, L35Q, Q52*; p7: N5S, K7N, E21T, R29K, R41K, T50P; pro: T12I, I62V, V77I; rev: V16A, I21L, R50S, L60I, S61D, L73F, D84G; tat: D9E, Q17K, T19S, L36W, V67A; vif: E61K, K63E, H73Q, T74P, Q105R, K176N, E179K; vpr: A4P, G6E, S41G, H77Q, I84M; vpu: I6T, I18L, V22A, L67F, M71L"}}}, {"name": "CRF12_BF_NODE_0000003", "node_attrs": {"div": 0.11845000000000003, "clade_membership": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A278G", "A3402G", "-5825C", "-5826T", "A6167G", "A6200-", "C6205T", "G6214-", "G6215-", "A6216-", "A6217-", "C8145T"], "RT-p51": ["E122K", "E436G"], "RT-p66": ["E436G"], "gp41": ["A281V"], "p24": ["N183G"], "vif": ["E61A"]}, "labels": {"aa": "RT-p51: E122K, E436G; RT-p66: E436G; gp41: A281V; p24: N183G; vif: E61A"}}, "children": [{"name": "CRF12_BF_NODE_0000004", "node_attrs": {"div": 0.12320000000000003, "clade_membership": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["G379A", "C537A", "C583T", "A607G", "G687A", "A776G", "A812G", "A1359T", "A1464C", "A1656C", "T2013C", "A2623G", "T2829A", "A2925G", "G3170A", "G3718A", "G3787A", "A4262G", "G4495A", "A4768C", "A4773G", "G5370A", "G5447A", "G5483T", "A5594G", "G5599A", "G5725A", "T5788G", "G5790A", "A5839G", "G6329A", "A6340T", "A6368G", "C6632T", "G6644A", "G6649A", "G6819A", "T6821G", "-6990A", "G7055A", "A7095G", "A7107T", "G7428A", "G7873A", "C7960A", "A8288G", "T8640C", "T8887A", "C8904A"], "RT-p51": ["V245E", "K277R", "G359S"], "RT-p66": ["V245E", "K277R", "G359S"], "gp120": ["T172A", "L260F", "V264I", "E401K", "N418I"], "gp41": ["A325V", "I329V"], "nef": ["R188S"], "p1": ["N9H"], "p17": ["R15K", "L68I", "A83V", "A118T"], "p24": ["T210S"], "pro": ["I72T"], "rev": ["E11D"], "tat": ["P84Q"], "vif": ["K63E"], "vpr": ["V89I"], "vpu": ["D40N", "D60E", "N78D"]}, "labels": {"aa": "RT-p51: V245E, K277R, G359S; RT-p66: V245E, K277R, G359S; gp120: T172A, L260F, V264I, E401K, N418I; gp41: A325V, I329V; nef: R188S; p1: N9H; p17: R15K, L68I, A83V, A118T; p24: T210S; pro: I72T; rev: E11D; tat: P84Q; vif: K63E; vpr: V89I; vpu: D40N, D60E, N78D"}}, "children": [{"name": "MF157739", "node_attrs": {"div": 0.16195000000000004, "accession": "MF157739", "clade_membership": {"value": "CRF12_BF"}, "country": {"value": "ES"}, "date": {"value": 2000.0}, "Strain_name": {"value": "X0531_2_nt0555_9485"}, "LANL_subtype": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A133T", "C150T", "T153C", "C160A", "T200C", "A224G", "C258T", "G261A", "G394A", "G401A", "A418G", "A423C", "G424A", "G480T", "C482T", "G489A", "T495G", "G498A", "C507A", "G562A", "A576G", "A605G", "A606G", "G614T", "C679A", "A686G", "A697C", "A699G", "A700C", "T771G", "A842T", "T861G", "G869A", "A914G", "T992G", "A1007G", "G1019A", "A1050G", "T1052A", "A1205G", "A1226G", "A1265C", "C1292A", "G1313A", "T1358G", "A1415C", "C1447A", "A1448T", "A1450C", "T1451A", "A1452T", "A1454T", "T1457A", "-1458A", "-1459C", "-1460T", "T1501G", "C1670G", "A1687G", "A1733G", "-1746C", "-1747C", "-1748C", "C1749T", "T1752C", "T1754G", "C1755A", "C1756A", "C1767A", "C1826A", "G1852A", "C1853A", "G2009A", "T2066A", "A2113G", "G2134A", "A2154G", "A2210G", "A2216T", "G2273A", "A2293G", "G2294A", "A2300G", "C2301A", "A2304G", "T2315G", "T2347C", "G2363A", "A2404T", "C2449A", "A2459G", "T2479A", "C2589T", "G2600A", "G2610A", "A2617G", "A2637G", "G2664C", "G2675A", "G2691A", "A2738T", "C2739T", "C2749A", "A2750C", "T2778A", "C2848T", "G2937A", "T3118C", "A3124G", "A3136G", "G3162A", "G3264A", "T3292G", "G3307A", "A3450C", "A3490G", "C3496T", "C3499T", "G3508A", "G3520A", "G3569A", "A3637G", "G3641A", "A3676C", "T3793C", "G3796A", "A3808C", "A3816G", "C3826T", "A3913G", "A3982G", "G4046A", "A4105G", "C4110T", "T4117C", "T4126C", "C4140T", "A4159C", "A4189G", "A4252G", "G4268A", "A4427T", "G4549A", "G4677A", "C4761T", "G4767A", "A4806C", "A4814G", "T4820G", "G4829A", "C4902A", "G4935A", "A4956T", "A4971G", "C4976T", "A5015G", "T5043C", "A5059C", "G5069A", "A5090G", "C5168T", "G5212A", "C5222T", "T5274A", "G5359C", "T5403G", "T5415C", "C5425A", "C5444A", "A5448G", "C5482T", "C5490T", "T5492C", "A5535T", "G5538A", "G5548C", "G5558A", "T5576A", "C5602T", "A5621C", "G5629A", "G5653A", "C5654T", "A5659T", "T5677G", "A5704C", "C5727T", "A5751G", "A5787G", "T5789A", "C5792A", "A5793G", "C5795A", "C5797T", "T5799G", "G5801C", "G5802A", "A5804C", "A5806C", "-5815G", "-5816A", "-5817A", "-5818G", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5825T", "A5830G", "T5831C", "C5833T", "C5834T", "A5867G", "G5958A", "T5964C", "A6030G", "C6115T", "A6159G", "T6160A", "A6164-", "C6165-", "T6166-", "G6167-", "T6169-", "G6170-", "C6172-", "-6175G", "C6183T", "A6185G", "A6186C", "-6200C", "-6201A", "C6202A", "G6204A", "G6211C", "-6212C", "-6213T", "-6214G", "-6215A", "-6216A", "-6217G", "C6228T", "T6250A", "A6262G", "G6267C", "T6271C", "C6275A", "T6279G", "G6280A", "C6293T", "T6295G", "A6330G", "C6331A", "G6333C", "G6336A", "C6339A", "A6438T", "G6442A", "G6451A", "G6478A", "C6487T", "G6490A", "A6525G", "A6623T", "T6634C", "-6697A", "-6698C", "-6699A", "-6700G", "-6701T", "-6702T", "A6742G", "T6760C", "A6785G", "A6786G", "T6787G", "C6792A", "A6807G", "C6810G", "A6811C", "A6813G", "G6814A", "T6815G", "A6817T", "G6820A", "C6822T", "T6823C", "C6824T", "A6825C", "T6826A", "C6829T", "-6830C", "-6831C", "-6832C", "C6862T", "T6895C", "A6905C", "G6906A", "T6932A", "G6935A", "-6989G", "-6992A", "-6994A", "-6995A", "-6996T", "-6997A", "-6998T", "-6999C", "-7000C", "A7005G", "C7025A", "G7026A", "A7033G", "A7056G", "G7065A", "G7072A", "C7096A", "T7147C", "A7155C", "C7164A", "A7190G", "G7195A", "A7197G", "C7264T", "A7420G", "G7440A", "A7500G", "G7519A", "T7622A", "G7627A", "G7628A", "G7633A", "G7642T", "G7672A", "A7693G", "G7717A", "G7759A", "A7782G", "C7801T", "A7898C", "T7930C", "A7931C", "G7938T", "G7979A", "C8009A", "G8017C", "A8036T", "C8065T", "A8118G", "T8145C", "G8158T", "A8180G", "A8196G", "A8216G", "C8221T", "G8276A", "T8278A", "G8328A", "G8330C", "C8331T", "T8366G", "G8368A", "T8369G", "A8370G", "T8387G", "A8388G", "A8400C", "G8409A", "C8410A", "C8415A", "G8454A", "A8459C", "C8504T", "G8516A", "G8526A", "G8532A", "A8537T", "A8564G", "A8597C", "C8607T", "A8608T", "A8653G", "C8741T", "T8758G", "A8801G", "G8864T", "A8874G", "A8912C", "T8914G", "C8937T", "A8938T", "C8952A", "G8970A", "A8971G", "C8972A", "T8973A", "G8974T", "C8978-"], "INT": ["E11D", "K14R", "A91T", "T112I", "T122I", "V165I", "I218L"], "RT-p51": ["K20R", "T39A", "M41L", "V60I", "D67N", "T69D", "K70R", "L74V", "V90I", "K103N", "K122E", "T165I", "E169K", "R172K", "Y181C", "G190A", "E194K", "R199K", "T215F", "D218E", "K219Q", "L228H", "R281K", "R356K", "R390K", "D399E"], "RT-p66": ["K20R", "T39A", "M41L", "V60I", "D67N", "T69D", "K70R", "L74V", "V90I", "K103N", "T165I", "E169K", "R172K", "Y181C", "G190A", "E194K", "R199K", "T215F", "D218E", "K219Q", "L228H", "R281K", "R356K", "R390K", "D399E", "K452T", "E492K", "E516K", "K527N"], "gp120": ["N5D", "R35K", "V37A", "E59G", "N102R", "T104K", "-105N", "-106L", "-107K", "N108E", "-123P", "A125V", "N132K", "R138T", "Q141K", "L142R", "D159R", "N160T", "S161K", "S162N", "Y195F", "K224R", "I257L", "I281-", "-282Q", "-283L", "N311G", "T313K", "K318R", "A319-", "N327-", "-328T", "R351Q", "S360T", "G361R", "-367I", "-368S", "-369N", "-370G", "-371T", "T385-", "R391K", "K401R", "R404Q", "M406I", "N414R", "N434T", "T437N", "N446D", "M447I", "K448R"], "gp41": ["R46K", "Q66R", "S107T", "E109K", "N160S", "K199Q", "I210L", "S212I", "G226S", "I245F", "E272G", "V281A", "W285C", "S293G", "N298S", "N305D", "V325I", "R342K", "A343L"], "nef": ["S8R", "S9K", "I10V", "I16V", "M20L", "A23N", "P25T", "E38K", "E62K", "E64K", "E65D", "V85F", "H89F", "K104R", "L139W", "E174D", "R178G", "L191R", "H199F", "Q204K"], "p17": ["R20Q", "K28R", "R30Q", "G49C", "E52K", "S54A", "E55K", "R76K", "T81A", "K91G", "E93D", "T115K", "D121A", "K122A"], "p2": ["T8N", "N9T", "T10S", "A11T", "V12T", "M14L"], "p24": ["S44A", "H87Q", "M96I", "T107A", "D187E"], "p6": ["N3S", "-26K", "Q30K"], "p7": ["I12S"], "pro": ["L10I", "L19I", "A71T", "L90M"], "rev": ["D7V", "S8N", "A15T", "Y28P", "K30N", "R44K", "A54E", "E57Q", "Y63F", "L73F", "V104L", "E111G"], "tat": ["D9E", "Q17K", "T23N", "V39A", "R53S", "A58P", "G61D", "V67D", "I74T", "A77S"], "vif": ["V31I", "A61T", "T74P", "D78E", "L106M", "E117K", "I124L", "I129V", "K158T"], "vpr": ["L22F", "H40Y", "V57D", "R85P"], "vpu": ["V5A", "A8T", "A16I", "I18L", "S24A", "I33L", "A61E", "M71V", "I75A", "P76F"]}, "labels": {"aa": "INT: E11D, K14R, A91T, T112I, T122I, V165I, I218L; RT-p51: K20R, T39A, M41L, V60I, D67N, T69D, K70R, L74V, V90I, K103N, K122E, T165I, E169K, R172K, Y181C, G190A, E194K, R199K, T215F, D218E, K219Q, L228H, R281K, R356K, R390K, D399E; RT-p66: K20R, T39A, M41L, V60I, D67N, T69D, K70R, L74V, V90I, K103N, T165I, E169K, R172K, Y181C, G190A, E194K, R199K, T215F, D218E, K219Q, L228H, R281K, R356K, R390K, D399E, K452T, E492K, E516K, K527N; gp120: N5D, R35K, V37A, E59G, N102R, T104K, -105N, -106L, -107K, N108E, -123P, A125V, N132K, R138T, Q141K, L142R, D159R, N160T, S161K, S162N, Y195F, K224R, I257L, I281-, -282Q, -283L, N311G, T313K, K318R, A319-, N327-, -328T, R351Q, S360T, G361R, -367I, -368S, -369N, -370G, -371T, T385-, R391K, K401R, R404Q, M406I, N414R, N434T, T437N, N446D, M447I, K448R; gp41: R46K, Q66R, S107T, E109K, N160S, K199Q, I210L, S212I, G226S, I245F, E272G, V281A, W285C, S293G, N298S, N305D, V325I, R342K, A343L; nef: S8R, S9K, I10V, I16V, M20L, A23N, P25T, E38K, E62K, E64K, E65D, V85F, H89F, K104R, L139W, E174D, R178G, L191R, H199F, Q204K; p17: R20Q, K28R, R30Q, G49C, E52K, S54A, E55K, R76K, T81A, K91G, E93D, T115K, D121A, K122A; p2: T8N, N9T, T10S, A11T, V12T, M14L; p24: S44A, H87Q, M96I, T107A, D187E; p6: N3S, -26K, Q30K; p7: I12S; pro: L10I, L19I, A71T, L90M; rev: D7V, S8N, A15T, Y28P, K30N, R44K, A54E, E57Q, Y63F, L73F, V104L, E111G; tat: D9E, Q17K, T23N, V39A, R53S, A58P, G61D, V67D, I74T, A77S; vif: V31I, A61T, T74P, D78E, L106M, E117K, I124L, I129V, K158T; vpr: L22F, H40Y, V57D, R85P; vpu: V5A, A8T, A16I, I18L, S24A, I33L, A61E, M71V, I75A, P76F"}}}, {"name": "AY037272", "node_attrs": {"div": 0.15230000000000005, "accession": "AY037272", "clade_membership": {"value": "CRF12_BF"}, "country": {"value": "UY"}, "date": {"value": 1999.0}, "Strain_name": {"value": "URTR17_URTR017"}, "LANL_subtype": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A360C", "G367A", "A417C", "A435C", "A500G", "A510G", "G519A", "G520A", "A523T", "G524T", "A530G", "G557A", "G579A", "T641G", "T885C", "T902C", "G1031A", "A1145G", "T1253C", "T1280G", "G1346A", "C1362T", "G1388A", "T1444C", "A1450G", "T1451C", "A1455G", "G1495A", "A1499G", "G1503A", "A1525G", "T1547C", "G1588A", "A1715G", "T1724C", "T1783A", "A1832T", "A1857G", "C1985T", "T1986C", "A2020G", "G2023A", "C2075A", "T2101C", "A2128G", "A2380G", "T2386A", "A2579T", "G2593A", "A2707C", "A2915G", "G2969A", "C3056T", "G3088A", "A3097C", "G3127A", "A3247G", "A3249G", "T3276A", "A3334C", "A3361T", "G3379A", "G3427A", "A3503G", "T3566C", "G3574A", "G3686A", "C4025T", "C4069A", "C4130A", "C4147A", "A4174G", "G4183A", "C4233A", "A4312G", "A4420T", "G4696A", "T4702C", "G4735A", "G4737A", "C4771A", "G4799A", "T4916C", "A4969C", "G5030A", "G5049A", "A5085C", "A5146G", "T5152C", "A5200G", "C5221T", "A5225G", "T5228C", "T5384C", "A5421G", "C5461A", "G5462A", "T5492A", "C5539A", "G5548T", "A5560T", "G5561T", "T5562G", "C5567A", "G5620C", "A5622C", "C5686T", "C5688A", "C5756T", "A5760G", "A5787T", "T5789C", "C5797A", "A5804G", "A5805C", "-5812C", "-5813C", "-5814T", "-5815C", "-5816T", "-5817G", "G5836A", "A5865G", "A5866G", "G5893A", "A6079G", "A6131G", "C6165A", "-6168C", "T6169C", "G6170A", "-6171T", "C6172T", "A6173-", "A6174-", "T6184C", "C6187G", "A6188G", "C6189G", "G6194A", "T6199C", "A6203T", "T6205G", "C6208G", "C6210A", "G6218-", "A6232G", "A6251G", "A6273G", "G6277A", "A6324G", "A6332C", "G6333A", "T6334G", "A6337C", "C6339G", "T6341A", "C6343T", "T6409C", "T6436C", "T6551C", "C6563T", "G6575A", "-6688T", "-6689A", "-6690T", "-6691A", "-6692A", "-6693C", "T6694A", "G6773A", "G6793A", "-6809G", "-6833C", "-6834C", "C6840A", "A6848C", "C6856A", "T6857C", "A6868G", "C6874T", "-6947G", "-6948A", "-6949A", "-6950A", "-6951G", "-6952C", "-6953C", "-6954T", "-6955G", "-6956A", "-6957T", "-6958T", "-6959A", "-6960A", "-6961T", "-6982G", "-6983T", "-6984C", "-6985A", "-6986C", "-6987A", "-6988C", "-6989A", "-6992C", "A7007-", "C7008-", "T7009-", "A7046C", "C7101T", "A7148C", "T7150G", "A7158G", "A7161C", "G7162T", "A7163C", "C7170T", "G7256A", "A7268G", "G7288A", "G7307A", "G7309A", "A7366G", "T7374C", "A7376G", "A7399G", "G7441A", "A7492G", "A7549G", "A7629G", "G7660A", "A7688G", "T7690G", "C7699T", "G7712A", "A7713T", "A7722G", "T7877G", "T7968C", "C8005A", "C8026T", "A8029C", "C8048T", "A8154G", "T8232C", "A8255G", "T8292G", "A8297G", "A8305G", "A8306C", "G8323C", "A8341G", "T8375C", "A8386C", "C8411T", "C8412G", "C8413A", "T8414G", "A8417T", "A8426T", "A8435G", "G8441A", "A8446G", "T8451C", "A8453G", "G8461A", "G8462T", "G8465A", "T8471C", "C8477T", "T8486A", "G8488C", "G8490A", "C8492T", "G8554A", "A8555G", "T8558C", "T8585C", "T8595G", "C8603T", "C8609T", "G8654A", "A8656G", "T8699C", "T8740C", "A8746T", "T8757C", "A8805G", "G8848A", "A8852G", "G8861A", "G8868C", "A8869C", "G8888A", "A8892G", "A8893T", "C8921T", "G8955A", "C8972G", "T8988G", "G9008-", "-9009A", "T9025G", "C9078T", "T9084A", "C9093T", "G9136A"], "INT": ["P119T", "S153Y", "K215N"], "RT-p51": ["S162C", "E204D", "I274V", "V292I", "P321S", "Q334H", "K385R", "L394Q", "E413D"], "RT-p66": ["E122K", "S162C", "E204D", "I274V", "V292I", "P321S", "Q334H", "K385R", "L394Q", "E413D", "T470A", "S491P", "V531I"], "gp120": ["E4G", "K93E", "T104N", "-105A", "-106I", "-109A", "-110T", "-111K", "-112G", "-113N", "-114S", "-115T", "E122-", "I126M", "M133V", "K140R", "N157S", "D159N", "N160Q", "D241N", "-280T", "D294A", "G307R", "R322K", "S323A", "-329K", "K332Q", "N334K", "S335P", "D365-", "T366-", "-384N", "T385D", "M398L", "N414S", "T416I", "N432Q", "N435S", "K436T", "T437P", "T439I", "V468I", "R472G"], "gp41": ["V2I", "I24T", "T25A", "E109G", "D113E", "N129E", "E137I", "N140S", "S192A", "I222T", "L242F", "Y284C", "V310A", "I318V", "L330R", "I332V", "L340F"], "nef": ["E15A", "P24E", "E28D", "Q35R", "N39K", "R40H", "R49T", "A50T", "R71K", "K105R", "I133T", "Y135F", "K155E", "S169N", "M173I", "E176P", "K184V", "D205N"], "p17": ["S9R", "G11E", "K28Q", "I34L", "K59E", "G62K", "Q63L", "V82I", "K91R", "D102E"], "p2": ["V7A", "N9S", "V13L"], "p24": ["A14S"], "p6": ["L35Q"], "p7": ["R10K", "V13I", "K20R", "R41K"], "pro": ["T12S", "K20R", "L63S", "L93I"], "rev": ["S8R", "V16C", "L18I", "I21F", "R53S", "L60F", "S61R", "P67L", "I102M"], "tat": ["L3P", "R29K", "V39E", "A58S", "S62L", "T64N", "S87P"], "vif": ["R37K", "F39S", "R50K", "V51I", "A62D", "K128T", "A155T", "K167Q", "H187R", "M189T"], "vpr": ["S41G"], "vpu": ["V5H", "A50V", "A61W", "E62A", "E63A", "L64I", "A65G", "A66G", "L67M", "-69P", "E70L", "M71P", "G72L", "L73I", "L74-", "I75-", "G77R"]}, "labels": {"aa": "INT: P119T, S153Y, K215N; RT-p51: S162C, E204D, I274V, V292I, P321S, Q334H, K385R, L394Q, E413D; RT-p66: E122K, S162C, E204D, I274V, V292I, P321S, Q334H, K385R, L394Q, E413D, T470A, S491P, V531I; gp120: E4G, K93E, T104N, -105A, -106I, -109A, -110T, -111K, -112G, -113N, -114S, -115T, E122-, I126M, M133V, K140R, N157S, D159N, N160Q, D241N, -280T, D294A, G307R, R322K, S323A, -329K, K332Q, N334K, S335P, D365-, T366-, -384N, T385D, M398L, N414S, T416I, N432Q, N435S, K436T, T437P, T439I, V468I, R472G; gp41: V2I, I24T, T25A, E109G, D113E, N129E, E137I, N140S, S192A, I222T, L242F, Y284C, V310A, I318V, L330R, I332V, L340F; nef: E15A, P24E, E28D, Q35R, N39K, R40H, R49T, A50T, R71K, K105R, I133T, Y135F, K155E, S169N, M173I, E176P, K184V, D205N; p17: S9R, G11E, K28Q, I34L, K59E, G62K, Q63L, V82I, K91R, D102E; p2: V7A, N9S, V13L; p24: A14S; p6: L35Q; p7: R10K, V13I, K20R, R41K; pro: T12S, K20R, L63S, L93I; rev: S8R, V16C, L18I, I21F, R53S, L60F, S61R, P67L, I102M; tat: L3P, R29K, V39E, A58S, S62L, T64N, S87P; vif: R37K, F39S, R50K, V51I, A62D, K128T, A155T, K167Q, H187R, M189T; vpr: S41G; vpu: V5H, A50V, A61W, E62A, E63A, L64I, A65G, A66G, L67M, -69P, E70L, M71P, G72L, L73I, L74-, I75-, G77R"}}}]}, {"name": "CRF12_BF_NODE_0000005", "node_attrs": {"div": 0.11989000000000002, "clade_membership": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["T3292C", "A3316G", "C3496T", "A4252G", "T6024A", "-6168A", "-6175C", "C6222T", "T6766C", "-6809A", "-7000C", "C7014T"], "RT-p66": ["E122K"], "gp120": ["V57E", "-105D", "-107T", "H145Q", "A319K", "H324Y", "T387I"], "p2": ["A11-"], "vpu": ["L73P"]}, "labels": {"aa": "RT-p66: E122K; gp120: V57E, -105D, -107T, H145Q, A319K, H324Y, T387I; p2: A11-; vpu: L73P"}}, "children": [{"name": "CRF12_BF_NODE_0000006", "node_attrs": {"div": 0.12380000000000002, "clade_membership": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A305T", "A369G", "A374G", "G579A", "A998G", "G1277A", "C1670A", "G4145A", "T4276G", "A4768C", "A5159G", "G5462A", "G5620A", "A5621C", "G5653A", "A5805C", "C5834T", "C5916A", "C5929T", "A6186G", "G6194A", "G6211-", "T6289G", "A6353C", "T6457G", "T6577G", "-6688T", "-6689A", "-6690T", "-6691A", "-6692C", "-6693A", "C6810A", "C6824T", "G6935A", "G6936A", "-6992A", "-6994A", "-6995G", "C7101A", "A7289C", "G7790A", "C8026A", "G8055A", "G8079A", "A8118G", "A8255G", "C8606T"], "INT": ["D167E"], "gp120": ["T21N", "-110T", "N167H", "N201K", "D241E", "-280H", "G361K", "T416N", "K479Q"], "gp41": ["F241L", "S251N", "R259H", "E272G", "I318V"], "p17": ["K12E", "V82I"], "rev": ["L60I"], "vif": ["A62D"], "vpr": ["T19A"]}, "labels": {"aa": "INT: D167E; gp120: T21N, -110T, N167H, N201K, D241E, -280H, G361K, T416N, K479Q; gp41: F241L, S251N, R259H, E272G, I318V; p17: K12E, V82I; rev: L60I; vif: A62D; vpr: T19A"}}, "children": [{"name": "AF408629", "node_attrs": {"div": 0.14901000000000003, "accession": "AF408629", "clade_membership": {"value": "CRF12_BF"}, "country": {"value": "AR"}, "date": {"value": 1997.0}, "Strain_name": {"value": "A32879"}, "LANL_subtype": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A10G", "T23C", "A50T", "T163G", "T200C", "G407A", "T426C", "G481A", "T495G", "G508A", "A509G", "G520C", "T572C", "C767T", "T774A", "G810A", "A1115C", "C1118T", "A1142G", "G1199A", "A1205G", "A1263T", "T1322C", "G1388A", "A1418G", "T1444C", "A1455G", "A1595G", "C1613T", "A1642G", "A1644C", "G1664A", "A1673G", "G1709T", "A1733-", "G1734-", "A1735-", "G1736A", "A1740G", "T1741G", "A1742G", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "A1907G", "C2098T", "A2210T", "C2211T", "G2498A", "C2500T", "C2708T", "C2714G", "A2932G", "A2936G", "A2951C", "A2959T", "A2977T", "A3058C", "A3071G", "C3100G", "A3268G", "T3276A", "C3355T", "C3399A", "G3524A", "A3666C", "G3685A", "A3703G", "A3808C", "T3889C", "C3995T", "A4027G", "A4060G", "A4107G", "C4140T", "G4143A", "A4262G", "C4674T", "T4702C", "C4728A", "C4771A", "T4826C", "G4865A", "G4949A", "A4950C", "C4965T", "T4991C", "T5027C", "A5065G", "G5075A", "G5121A", "A5142C", "A5154C", "T5203C", "A5246G", "G5330A", "A5396G", "A5448C", "C5461A", "C5481T", "C5482T", "A5545C", "G5558A", "T5577C", "T5616C", "T5626G", "T5739A", "G5755A", "A5918C", "T5948G", "A5956C", "T6010C", "A6015G", "G6020C", "A6092G", "C6097A", "-6171T", "A6185G", "-6200C", "-6201A", "C6202A", "A6209C", "-6211C", "-6212C", "-6213T", "-6214G", "-6215A", "-6216A", "-6217G", "C6228A", "C6233A", "T6250G", "C6278A", "T6279A", "A6281G", "G6303A", "C6305T", "T6306C", "G6333A", "A6337C", "T6409C", "A6464G", "C6469T", "C6487T", "G6490A", "A6589C", "C6618A", "T6637G", "T6641C", "C6647T", "A6648G", "A6695T", "G6714A", "G6773A", "A6790T", "T6794A", "G6802A", "A6813G", "A6818G", "-6830G", "-6831A", "-6832A", "-6833A", "-6834A", "A6836G", "A6837G", "A6849G", "A6850G", "T6857A", "A6944G", "-6969G", "-6970A", "-6971A", "-6972G", "-6973G", "-6974A", "-6975C", "-6976T", "-6982G", "-6983T", "-6984T", "-6985T", "-6986A", "-6987A", "-6988T", "-6989A", "-6990C", "C6991A", "-6996A", "-6997T", "-6998G", "-6999A", "A7113C", "C7127A", "T7147G", "T7150A", "A7155C", "A7158C", "A7160G", "A7161G", "C7164A", "A7231G", "A7234G", "G7244C", "G7269C", "A7276G", "A7299G", "A7366G", "G7426A", "G7428A", "A7522G", "A7527T", "A7533G", "G7534T", "A7540C", "G7552A", "A7589G", "A7626T", "A7632C", "G7640A", "G7642T", "A7668G", "G7677A", "A7680G", "A7722G", "C7723A", "A7744T", "G7754A", "C7755A", "A7791G", "C7805T", "T7813C", "A7818G", "T7930C", "A7931C", "C8044A", "A8119C", "G8133C", "A8170G", "G8173A", "T8211C", "G8276A", "A8386C", "A8405G", "G8409A", "A8459C", "G8590C", "T8595G", "T8770A", "G8795T", "A8870T", "A8912G", "-9014G", "G9016T", "C9018A", "A9019G", "C9078T", "A9095G", "T9108C"], "INT": ["E11D", "K111R", "T122I", "S123N", "A124T"], "RT-p51": ["T39L", "V135I", "Q207E", "R281G", "T286P", "I326V", "L394Q", "A435E"], "RT-p66": ["T39L", "V135I", "Q207E", "R281G", "T286P", "I326V", "L394Q", "A435E", "A477T", "Q524P"], "gp120": ["T22P", "S32A", "E34D", "Q54R", "V56L", "E57D", "I80V", "-106V", "-109N", "-111G", "-112T", "-113N", "-114S", "-115T", "-116S", "-118P", "-119L", "-120K", "-121E", "-123L", "A125E", "Q127K", "N132K", "L142K", "K143E", "R150K", "L151S", "S162T", "K204E", "R245S", "T255N", "N261K", "S263P", "Q265W", "I281L", "R287Q", "G307R", "K312N", "L314I", "K320R", "R322G", "P326E", "-328G", "-329T", "K332R", "S335T", "N364D", "D365-", "T366-", "-384D", "N420T", "L425I", "N432K", "N434T", "N435T", "K436G", "T437N", "E464Q", "R472T", "K482R"], "gp41": ["Y75F", "K77S", "Q79H", "N96D", "Q108L", "E110A", "D113N", "K122R", "S125N", "N126S", "N140R", "Q147H", "A151K", "D163S", "K172R", "I210L", "D247E", "R277T", "L303S", "A325I"], "nef": ["E15A", "A23T", "G83A", "F143Y", "E151D", "E176D", "K182M"], "p1": ["K4R", "I5L"], "p17": ["G49D", "S54A", "R58Q", "G62A"], "p2": ["V7A", "-11A", "V13-"], "p24": ["A14S", "L15I", "V27I", "E128D", "T178S"], "p6": ["E19-", "I21G", "T22I", "P23T", "S24P", "P25S", "-26P"], "pro": ["N37D"], "rev": ["E10D", "A15T", "I21S", "Y28P", "T91P", "Q95H", "T108A", "V109I"], "tat": ["N7S", "K24S", "R29K", "L36W", "G61D", "I74T"], "vif": ["H30Y", "F39S", "H48N", "K122Q", "H127Y", "K160R", "E179K", "S186R", "N190H"], "vpr": ["G6E", "E13A", "E17A", "N48D"], "vpu": ["V5D", "L7V", "A16T", "D44E", "A50T", "-69D", "E70-", "P76L"]}, "labels": {"aa": "INT: E11D, K111R, T122I, S123N, A124T; RT-p51: T39L, V135I, Q207E, R281G, T286P, I326V, L394Q, A435E; RT-p66: T39L, V135I, Q207E, R281G, T286P, I326V, L394Q, A435E, A477T, Q524P; gp120: T22P, S32A, E34D, Q54R, V56L, E57D, I80V, -106V, -109N, -111G, -112T, -113N, -114S, -115T, -116S, -118P, -119L, -120K, -121E, -123L, A125E, Q127K, N132K, L142K, K143E, R150K, L151S, S162T, K204E, R245S, T255N, N261K, S263P, Q265W, I281L, R287Q, G307R, K312N, L314I, K320R, R322G, P326E, -328G, -329T, K332R, S335T, N364D, D365-, T366-, -384D, N420T, L425I, N432K, N434T, N435T, K436G, T437N, E464Q, R472T, K482R; gp41: Y75F, K77S, Q79H, N96D, Q108L, E110A, D113N, K122R, S125N, N126S, N140R, Q147H, A151K, D163S, K172R, I210L, D247E, R277T, L303S, A325I; nef: E15A, A23T, G83A, F143Y, E151D, E176D, K182M; p1: K4R, I5L; p17: G49D, S54A, R58Q, G62A; p2: V7A, -11A, V13-; p24: A14S, L15I, V27I, E128D, T178S; p6: E19-, I21G, T22I, P23T, S24P, P25S, -26P; pro: N37D; rev: E10D, A15T, I21S, Y28P, T91P, Q95H, T108A, V109I; tat: N7S, K24S, R29K, L36W, G61D, I74T; vif: H30Y, F39S, H48N, K122Q, H127Y, K160R, E179K, S186R, N190H; vpr: G6E, E13A, E17A, N48D; vpu: V5D, L7V, A16T, D44E, A50T, -69D, E70-, P76L"}}}, {"name": "AF408630", "node_attrs": {"div": 0.14864000000000002, "accession": "AF408630", "clade_membership": {"value": "CRF12_BF"}, "country": {"value": "AR"}, "date": {"value": 1997.0}, "Strain_name": {"value": "A32989"}, "LANL_subtype": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A255C", "T288C", "A399C", "C583T", "A604G", "G620A", "A678G", "T771G", "G784A", "G821A", "T875C", "A911T", "T1040C", "C1060A", "A1186G", "C1211T", "T1280G", "A1328G", "T1334A", "A1361G", "A1492C", "G1503A", "A1525G", "A1532C", "A1660G", "G1697A", "G1709A", "T1783A", "C1826A", "A1918G", "C1985G", "A1993C", "A2119G", "A2221G", "A2224G", "T2364G", "A2380G", "T2479A", "C2581T", "A2623G", "C2749T", "A2815G", "G2828A", "A2839C", "C2848T", "T2873A", "A3031G", "A3066G", "A3109G", "T3165C", "A3221G", "C3225T", "G3264A", "C3275T", "G3283A", "C3292A", "C3319T", "A3367G", "C3415T", "A3490G", "A3503C", "G3508A", "G3556A", "G3595A", "A3619G", "A3637G", "A3676G", "G3718A", "A3766G", "A3770G", "A3877G", "G3965A", "A4076T", "C4110T", "C4146A", "G4148A", "G4255A", "A4264C", "G4495A", "G4737A", "A4769G", "C4771G", "A4773G", "A4804T", "T4820A", "A4969G", "T5003C", "A5085C", "A5200G", "A5293C", "A5302C", "A5355G", "G5483A", "G5484C", "G5548A", "T5577A", "T5584C", "T5641C", "C5654T", "A5659T", "C5686T", "T5707A", "T5708G", "G5758C", "G5791T", "T5870C", "C5917T", "A5955T", "T5992C", "T6004C", "G6023A", "G6133A", "A6158C", "T6163C", "A6168C", "T6169C", "G6170C", "-6171A", "C6172T", "A6173G", "A6177C", "G6179A", "C6180A", "C6181A", "C6183A", "C6187T", "C6190A", "G6195A", "C6196T", "C6198G", "T6199C", "-6200A", "-6201C", "A6203C", "G6204T", "T6205G", "A6206G", "G6207A", "C6208A", "A6209-", "C6210-", "G6220T", "T6222A", "C6278G", "A6288G", "T6310C", "C6325T", "A6338C", "A6350T", "C6370T", "C6404G", "C6428A", "T6460G", "G6466C", "C6562T", "G6566C", "A6573G", "C6601T", "G6605C", "G6611A", "A6654C", "C6660T", "C6713A", "C6748G", "C6758T", "A6765G", "G6771A", "A6801G", "A6807G", "A6809G", "T6815C", "C6829G", "-6833C", "-6834C", "G6871A", "T6888C", "G6889A", "-6989G", "-6990A", "-6996G", "-6997A", "-6998T", "-6999C", "C7006A", "T7009C", "A7032G", "A7036G", "A7037G", "A7107G", "A7148C", "T7150G", "A7152C", "A7154G", "T7156G", "C7170T", "G7235A", "T7243A", "G7256A", "G7269A", "G7291C", "T7325C", "C7328A", "G7346A", "G7395A", "G7440A", "A7641G", "G7712A", "G7720A", "G7846A", "G7873A", "T7913G", "A7943G", "G8006A", "G8008A", "C8009A", "A8014G", "T8028C", "G8045C", "G8208C", "C8223T", "G8249A", "G8269A", "T8277C", "G8283A", "T8366C", "A8370T", "G8373C", "T8374G", "G8385C", "A8458G", "A8487G", "C8688A", "G8759T", "T8786C", "C8809A", "G8864T", "T8887G", "G8905T", "C8906A", "C8913T", "G8915T", "A8922T", "A8924T", "G8935A", "T8947A", "C8948T", "C9023T", "C9041T", "C9068T"], "INT": ["D64N", "I101L", "T112I", "A124N", "A125T", "G163S"], "RT-p51": ["V90G", "V245M", "E248D", "L260I", "D324G", "M357T", "T376A", "T377I", "R390K", "D399E"], "RT-p66": ["V90G", "V245M", "E248D", "L260I", "D324G", "M357T", "T376A", "T377I", "R390K", "D399E", "T470P", "I559V"], "gp120": ["E34V", "E57N", "N102H", "T104D", "-106T", "T107K", "-109S", "-111N", "-112N", "-113S", "-114T", "-115L", "-116E", "-117D", "-118Q", "E122-", "L142V", "Q145R", "N160S", "S161R", "S162P", "I166L", "P184A", "P192T", "D202E", "K204N", "A238P", "E240G", "D251H", "A253T", "N267T", "T269I", "I298M", "H302Y", "N304S", "S306N", "Q316R", "K318R", "K319E", "F325L", "-328T", "M345T", "-367G", "-368S", "-369N", "-370E", "-371T", "T385-", "K393R", "I395V", "N418S", "N432Q", "N433T", "N434G", "K436Q", "T439I", "V461I", "V468I", "R472K", "Q479H"], "gp41": ["F8L", "L9I", "A15T", "R31K", "N42S", "R46K", "D113G", "E137K", "D163N", "L204V", "R214G", "V235I", "L242S", "D248H", "S302T", "T307I", "D316N", "R327K"], "nef": ["I10L", "V11R", "E15H", "N39R", "R49G", "V85L", "H116N", "L139F", "A156D", "E174D", "K182R", "R188L", "L191F", "I194F", "R198K", "F202Y", "D205G"], "p1": ["K10R"], "p17": ["A83V", "Q90R", "T115A"], "p2": ["V12T"], "p24": ["R18K", "T110N", "D152G"], "p6": ["L35Q"], "p7": ["Q9P", "V13I", "K20R"], "pro": ["L10I", "L63V", "E65D"], "rev": ["I21Y", "E32G", "R53H", "A54K", "S56G", "R66P"], "tat": ["K24R", "R29Q", "L36H", "A58T", "S70P"], "vif": ["V51I", "D62G", "K63E", "H73L", "D78E", "K128R", "K167Q"], "vpr": ["Q66H", "I84V"], "vpu": ["V5T", "A16I", "I18L", "L27F", "L34R", "E51Q", "D60E", "A61L", "E62S", "E63A", "A65G", "A66D", "L67M", "-69P", "E70L", "M71I", "G72L", "P73G", "L74N", "P76-", "G77-", "N78-", "I79-"]}, "labels": {"aa": "INT: D64N, I101L, T112I, A124N, A125T, G163S; RT-p51: V90G, V245M, E248D, L260I, D324G, M357T, T376A, T377I, R390K, D399E; RT-p66: V90G, V245M, E248D, L260I, D324G, M357T, T376A, T377I, R390K, D399E, T470P, I559V; gp120: E34V, E57N, N102H, T104D, -106T, T107K, -109S, -111N, -112N, -113S, -114T, -115L, -116E, -117D, -118Q, E122-, L142V, Q145R, N160S, S161R, S162P, I166L, P184A, P192T, D202E, K204N, A238P, E240G, D251H, A253T, N267T, T269I, I298M, H302Y, N304S, S306N, Q316R, K318R, K319E, F325L, -328T, M345T, -367G, -368S, -369N, -370E, -371T, T385-, K393R, I395V, N418S, N432Q, N433T, N434G, K436Q, T439I, V461I, V468I, R472K, Q479H; gp41: F8L, L9I, A15T, R31K, N42S, R46K, D113G, E137K, D163N, L204V, R214G, V235I, L242S, D248H, S302T, T307I, D316N, R327K; nef: I10L, V11R, E15H, N39R, R49G, V85L, H116N, L139F, A156D, E174D, K182R, R188L, L191F, I194F, R198K, F202Y, D205G; p1: K10R; p17: A83V, Q90R, T115A; p2: V12T; p24: R18K, T110N, D152G; p6: L35Q; p7: Q9P, V13I, K20R; pro: L10I, L63V, E65D; rev: I21Y, E32G, R53H, A54K, S56G, R66P; tat: K24R, R29Q, L36H, A58T, S70P; vif: V51I, D62G, K63E, H73L, D78E, K128R, K167Q; vpr: Q66H, I84V; vpu: V5T, A16I, I18L, L27F, L34R, E51Q, D60E, A61L, E62S, E63A, A65G, A66D, L67M, -69P, E70L, M71I, G72L, P73G, L74N, P76-, G77-, N78-, I79-"}}}]}, {"name": "CRF12_BF_NODE_0000007", "node_attrs": {"div": 0.12403000000000003, "clade_membership": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["G261-", "C262-", "T1063C", "G2593A", "A2725G", "G2937A", "C3319T", "T3497C", "A4060G", "C4140G", "G4263A", "A4270G", "G4407A", "A4769C", "T4932A", "A4952T", "G5548C", "C5567A", "A5866C", "T6025A", "-6171C", "C6180G", "T6242A", "A6324G", "C6343T", "A6581G", "-6697A", "-6698C", "-6699A", "-6702T", "G7315A", "A7669G", "T7913G", "A7953G", "G7965A", "G8030T", "T8035C", "T8138A", "C8648T", "C8972G"], "INT": ["T122S", "R211K"], "RT-p51": ["R281K"], "RT-p66": ["R281K", "S468P"], "gp120": ["N157S", "I243V", "T330S"], "gp41": ["M4I", "N42S", "L204V", "D217G", "G221E", "A243S", "W279R"], "p2": ["V12T"], "p24": ["L111P"], "rev": ["E11D", "L18I", "S61I", "Y63H", "V97E"], "tat": ["A58P", "T64N", "T82A", "E86K"], "vif": ["A61D", "S116T", "K122N"]}, "labels": {"aa": "INT: T122S, R211K; RT-p51: R281K; RT-p66: R281K, S468P; gp120: N157S, I243V, T330S; gp41: M4I, N42S, L204V, D217G, G221E, A243S, W279R; p2: V12T; p24: L111P; rev: E11D, L18I, S61I, Y63H, V97E; tat: A58P, T64N, T82A, E86K; vif: A61D, S116T, K122N"}}, "children": [{"name": "AF385935", "node_attrs": {"div": 0.15252000000000004, "accession": "AF385935", "clade_membership": {"value": "CRF12_BF"}, "country": {"value": "UY"}, "date": {"value": 1999.0}, "Strain_name": {"value": "URTR35"}, "LANL_subtype": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A46G", "T200C", "G215A", "A256G", "G279A", "A301G", "A369G", "G424A", "A474G", "G508A", "G520C", "A530G", "G562A", "A571T", "C669A", "C765T", "G869A", "C890T", "A911G", "T992A", "A1193G", "G1487A", "A1529G", "C1598T", "C1670G", "A1673G", "T1676C", "C1721T", "A1733G", "C1745A", "-1746A", "-1747C", "-1748C", "C1756A", "C1761G", "G1766A", "A1774G", "G1784A", "G1942A", "C1987T", "A2161G", "T2245A", "C2263T", "G2273A", "T2383C", "A2519G", "G2524A", "C2527T", "G2530A", "A2560T", "T2597C", "A2617G", "A2665C", "A2726G", "G2727C", "C2749T", "A2773C", "C2831T", "T2899C", "A3096T", "T3121C", "A3192G", "A3196G", "C3412T", "T3431G", "A3435G", "G3483A", "C3499T", "G3595A", "T3602A", "G3664A", "A3682G", "A3715G", "G3802A", "A3808C", "T3850C", "C4075T", "A4107G", "C4147T", "G4150A", "A4178G", "C4207T", "A4262C", "A4264C", "G4267A", "C4321T", "T4388G", "G4464A", "G4495A", "A4498G", "C4534T", "A4760T", "A4774C", "G4862A", "G4864A", "A5015G", "A5085C", "A5119G", "G5121A", "G5131A", "A5191G", "C5237T", "G5267A", "A5268C", "T5384C", "C5424T", "G5427A", "G5447A", "C5461A", "G5483T", "G5491A", "A5493G", "A5494G", "A5533G", "A5556G", "G5558A", "G5561A", "T5576A", "C5611A", "A5613C", "A5621T", "A5631T", "C5651T", "T5677A", "A5704C", "G5711A", "T5731C", "A5733T", "A5734C", "C5825A", "C5878T", "A5956C", "G5958C", "A5959G", "T5964C", "T5980A", "G6020A", "A6073G", "T6184A", "A6185C", "A6186G", "G6194T", "G6195T", "-6200C", "-6201A", "C6202A", "G6204A", "G6211C", "-6212C", "-6213T", "-6214G", "-6215A", "-6216A", "-6217G", "T6222A", "C6243G", "A6288G", "A6323G", "C6325T", "G6333A", "A6335G", "T6358C", "T6457A", "C6483T", "A6488C", "G6490A", "C6612T", "A6613G", "C6619A", "C6660T", "C6667T", "-6700G", "-6701C", "A6703G", "A6752C", "A6770G", "G6771A", "C6777A", "A6785C", "C6792A", "C6800G", "A6805G", "A6807G", "C6810A", "A6812G", "G6819A", "-6833T", "-6834C", "A6836G", "A6839G", "A6842G", "C6843A", "C6876T", "A6884G", "-6989G", "-6990A", "-6992A", "-6994A", "-6995C", "-6996A", "-6997A", "-6998A", "-6999C", "T7015C", "G7040A", "A7100G", "A7113G", "A7126G", "A7148C", "A7151C", "A7152C", "A7154G", "A7160C", "A7210G", "T7322A", "C7328A", "G7426A", "G7441A", "C7463T", "G7524A", "A7525G", "A7626T", "A7629G", "G7633T", "G7642C", "C7651T", "G7658C", "A7676G", "C7684T", "A7688C", "T7690G", "A7714G", "A7722C", "A7741G", "A7818G", "A7903G", "A7921G", "A7947G", "C7959T", "T7968C", "G7992A", "C8048T", "T8159G", "A8170C", "C8189A", "A8196G", "G8245A", "T8277C", "C8320T", "T8375A", "T8387G", "G8441A", "A8459C", "T8595A", "C8607T", "A8608T", "A8636T", "T8646C", "G8666C", "G8759T", "A8794C", "A8870G", "C8873A", "A8886C", "T8887A", "C8904A", "T8914G", "G8935A", "G8942T", "C8952A", "G8991A", "C9041T", "T9071G", "T9073C", "A9131G"], "INT": ["E11D", "K111R", "I135V", "G163H", "S205A", "S230N"], "RT-p51": ["V60I", "I142V", "R211A", "Q334L", "K366R"], "RT-p66": ["V60I", "I142V", "R211A", "Q334L", "K366R", "S446A", "N447S", "R463K", "L503I"], "gp120": ["E4D", "E34D", "R35T", "V37A", "V56I", "-106L", "T107K", "N108E", "-123Q", "Q145R", "D159G", "N160G", "S161N", "S162N", "N201K", "P210L", "K212Q", "A253V", "T269I", "I281-", "-282Q", "-283L", "K300Q", "S306D", "T308-", "Q309-", "W310-", "N311-", "K312-", "T313-", "L314-", "E315K", "V317W", "K318H", "R322E", "S323E", "Y324V", "F325R", "P326K", "N327E", "-328L", "-329K", "P341L", "T344A", "-367Q", "-368T", "-369N", "-384D", "V396I", "T416A", "N420S", "N432H", "N433P", "N434D", "K436H"], "gp41": ["L7M", "L9I", "R74K", "Q108L", "E109G", "E110D", "E119Q", "S125G", "N129Q", "N140T", "K172R", "E215G", "P219L", "I222T", "G230D", "W286G", "L296I", "N298S"], "nef": ["V85I", "H89F", "E98D", "Y102H", "E108D", "L139F", "E151A", "D177E", "K182Q", "R188S", "L191R", "R198K", "Q204K"], "p17": ["K12E", "R30K", "N47D", "R58Q", "G62A", "R76K", "Y79F", "Q112K"], "p24": ["H12Y", "A14S", "H87Q"], "p6": ["P23T", "S24P", "P25S", "-26Q", "Q28E", "D32G"], "rev": ["K14R", "A15T", "V16I", "P67L", "V104G", "T108P", "T114N"], "tat": ["L3P", "V39M", "T40A", "R53G", "G61D", "S62N", "V67D", "N80D", "P84S", "S87P"], "vif": ["K63T", "R93K", "K167Q", "Q178R", "E179K", "G182D"], "vpr": ["G6E", "H45Y", "E55T"], "vpu": ["Q2N", "A15V", "S24T", "I33L", "R35K", "I43L", "P73H"]}, "labels": {"aa": "INT: E11D, K111R, I135V, G163H, S205A, S230N; RT-p51: V60I, I142V, R211A, Q334L, K366R; RT-p66: V60I, I142V, R211A, Q334L, K366R, S446A, N447S, R463K, L503I; gp120: E4D, E34D, R35T, V37A, V56I, -106L, T107K, N108E, -123Q, Q145R, D159G, N160G, S161N, S162N, N201K, P210L, K212Q, A253V, T269I, I281-, -282Q, -283L, K300Q, S306D, T308-, Q309-, W310-, N311-, K312-, T313-, L314-, E315K, V317W, K318H, R322E, S323E, Y324V, F325R, P326K, N327E, -328L, -329K, P341L, T344A, -367Q, -368T, -369N, -384D, V396I, T416A, N420S, N432H, N433P, N434D, K436H; gp41: L7M, L9I, R74K, Q108L, E109G, E110D, E119Q, S125G, N129Q, N140T, K172R, E215G, P219L, I222T, G230D, W286G, L296I, N298S; nef: V85I, H89F, E98D, Y102H, E108D, L139F, E151A, D177E, K182Q, R188S, L191R, R198K, Q204K; p17: K12E, R30K, N47D, R58Q, G62A, R76K, Y79F, Q112K; p24: H12Y, A14S, H87Q; p6: P23T, S24P, P25S, -26Q, Q28E, D32G; rev: K14R, A15T, V16I, P67L, V104G, T108P, T114N; tat: L3P, V39M, T40A, R53G, G61D, S62N, V67D, N80D, P84S, S87P; vif: K63T, R93K, K167Q, Q178R, E179K, G182D; vpr: G6E, H45Y, E55T; vpu: Q2N, A15V, S24T, I33L, R35K, I43L, P73H"}}}, {"name": "AF385934", "node_attrs": {"div": 0.14920000000000003, "accession": "AF385934", "clade_membership": {"value": "CRF12_BF"}, "country": {"value": "UY"}, "date": {"value": 1999.0}, "Strain_name": {"value": "URTR23"}, "LANL_subtype": {"value": "CRF12_BF"}}, "branch_attrs": {"mutations": {"nuc": ["A14G", "C151T", "G167A", "T201A", "A303C", "T495G", "G579A", "T595A", "C603A", "A606G", "A607G", "T771C", "T774A", "A812G", "T858C", "T861G", "T897C", "A905T", "G989A", "A998G", "C1178T", "A1226G", "G1277A", "A1359T", "A1452C", "G1503A", "A1525G", "G1588A", "A1642G", "G1661A", "C1670T", "C1679T", "G1691A", "T1724C", "A1762G", "C1787T", "A1804G", "C1825A", "C1826G", "C1831T", "G2023A", "C2075A", "T2104C", "T2209C", "C2211T", "A2212G", "G2311A", "T2458C", "T2464G", "A2611G", "G2683A", "C2684A", "G2710A", "T2735C", "T2737C", "T2788G", "A2839C", "T2873G", "A2915G", "A2951G", "A2971C", "A3031G", "G3088A", "A3241T", "C3346T", "A3450T", "G3523A", "C3535A", "T3559C", "C3649T", "C3908G", "G3989A", "A4076C", "C4123T", "C4130A", "A4189G", "G4255A", "C4643T", "G4677A", "A4693G", "T4701G", "C4724T", "G4764C", "T4826C", "G4829A", "G4835A", "C4988T", "G5049A", "A5086C", "G5140A", "G5143A", "T5260C", "T5398C", "T5436C", "T5451C", "G5534A", "T5614C", "A5619T", "G5653A", "C5654T", "A5698C", "G5699T", "T5707A", "T5708G", 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L45V, V72I, I101L, P119T, G163K; RT-p51: T39M, D123E, Q197K, F214L, E248D, L260V, I274V, T286A; RT-p66: T39M, D123E, Q197K, F214L, E248D, L260V, I274V, T286A, K452I, H480Q; gp120: T3D, E4N, N5-, R35K, E59K, D66N, T78A, D105Q, -106N, -109D, -110S, -115L, E122-, A125E, S130T, L142K, R150K, P155Q, S161G, S162I, D202E, I249F, T255I, E262D, S278G, -280H, R287Q, T308A, Q309K, K312E, Q316R, K319T, P326S, -328T, -329T, K332T, G361K, N364T, D365S, A408T, N418R, G443W, V468I; gp41: L7F, L54M, L84I, E109D, D113K, S125Y, N160T, L206F, G225E, V281I, I301V, I318V, A325V, I329V, I332A; nef: I10-, V11I, E28A, G29P, N39R, I101V, K104E, Q107K, Y120F, Q125H, I133V, M173I, E176G, R178K, K182V, K184R, F202Y; p1: K4R; p17: S54A, V82I, F87Y, Q90K, K91G; p2: T10P; p24: A14P, L15I, S44A, T210S; p6: Q28R, K42R, P49Q, S51L; p7: V13I, K20R, R41K; pro: L10V, L93I; rev: D7N, I21F, S99N; tat: K24R, L36R, R53K; vif: V31I, K36R, F39V, E60Q, A155T, K167T, G185E, S186N; vpu: S3P, L4F, V5E, A16I, R31L, L34R, L42I, D44A, I75V, P76L, N78D, I79V, D80N"}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "results/subtype_trees/F1.nwk", "node_attrs": {"div": 0.06466000000000001, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["C1444-", "A1446-", "-1460C", "A1543G", "G1731A", "A2818G", "A3019G", "G3264A", "A3490G", "T5018C", "A5866C", "T6196C", "C6829T", "T7217C", "C8168A", "C8684T", "C9012G", "G9016C"], "RT-p51": ["A173T", "R390K"], "RT-p66": ["R390K", "K527Q"], "gp41": ["M7L", "H209L", "L289T"], "p6": ["G18R"], "p7": ["K26R"], "rev": ["E10T", "P107H"], "vpr": ["E6G"]}, "labels": {"aa": "RT-p51: A173T, R390K; RT-p66: R390K, K527Q; gp41: M7L, H209L, L289T; p6: G18R; p7: K26R; rev: E10T, P107H; vpr: E6G", "clade": "F1"}}, "children": [{"name": "F1_NODE_0000001", "node_attrs": {"div": 0.06908, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["C767T", "T875C", "C1244T", "G1498A", "G1503A", "G1588A", "A1772G", "A1979C", "T2195C", "G2311A", "G2362A", "A2692G", "G3398A", 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"F1"}}, "branch_attrs": {"mutations": {"nuc": ["G365C", "C379A", "A380T", "G395A", "G401A", "A419G", "T422C", "A425G", "A426C", "G428A", "C435A", "G455A", "C471G", "G474A", "A491G", "T495C", "G508A", "A510C", "C525T", "A533C", "C537A", "C540G", "A541C", "G562A", "C583T", "C603A", "A604G", "G608A", "G609A", "A619G", "G620A", "G629A", "A632T", "G641T", "A653G", "A665G", "C679A", "G683A", "G689A", "T748A", "A755G", "G771C", "T773C", "C774A", "G806A", "G809A", "A815G", "A839G", "A863T", "A881G", "T902C", "A905G", "C944T", "A959G", "G989A", "G1022A", "T1028C", "T1046A", "C1061T", "A1073G", "C1137T", "T1143C", "C1169T", "C1187T", "G1192A", "A1193G", "T1234G", "C1235G", "G1260T", "C1261G", "T1262C", "G1277A", "C1295T", "T1296C", "G1313C", "G1346A", "A1349T", "T1385C", "G1404A", "G1412A", "G1419A", "T1421C", "-1444C", "-1446A", "A1450G", "A1452G", "-1455G", "-1457A", "-1458G", "-1459C", "A1476G", "T1478C", "C1481T", "A1494C", "G1495A", "A1499G", "T1501G", "T1502A", "T1517C", "A1536C", 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"A6065G", "A6066G", "A6076T", "A6079G", "A6086C", "C6087A", "A6092G", "A6095G", "C6116T", "T6127C", "T6151C", "T6155C", "-6170G", "-6171C", "-6172T", "-6173A", "-6174A", "-6175C", "-6176C", "-6177T", "T6178C", "G6179A", "-6180A", "C6183A", "T6184C", "A6186C", "T6187C", "-6188T", "A6192C", "-6195A", "C6196T", "-6198A", "-6199C", "-6201C", "-6203T", "G6204C", "-6207G", "C6208T", "G6211A", "-6212A", "-6213A", "-6214A", "-6215C", "-6216A", "-6217A", "G6220C", "C6221T", "A6223G", "C6238T", "T6241C", "C6256T", "A6262G", "G6263A", "G6277A", "C6278A", "T6279G", "A6292G", "T6298C", "G6303A", "C6317A", "C6318A", "A6330G", "T6337A", "A6338G", "G6339A", "-6340G", "T6373C", "G6380A", "G6391A", "A6394G", "T6397A", "G6399T", "G6400T", "T6436A", "A6459T", "T6460G", "G6466C", "A6471C", "C6477T", "G6490T", "C6499T", "T6511C", "G6532A", "A6581G", "A6589G", "T6590A", "C6593G", "A6594C", "T6607C", "G6611A", "G6644A", "A6669G", "C6673T", "-6689A", "-6691C", "-6697T", "A6703-", "T6721C", "A6733T", "G6754A", "C6777T", "A6789C", "T6794G", "G6797C", "C6800A", "-6809A", "C6810A", "A6817G", "A6818T", "A6819T", "G6820A", "C6822A", "T6823G", "T6827C", "-6830C", "-6831T", "-6832T", "-6833A", "-6834A", "T6835G", "T6838C", "A6840C", "T6857A", "A6859T", "T6863G", "T6888C", "G6889A", "A6926G", "G6935C", "G6936A", "-6970G", "-6971A", "-6972G", "-6973T", "-6974C", "-6975A", "-6976G", "-6977C", "-6978A", "-6981G", "-6982G", "-6983T", "-6984C", "-6985A", "-6986A", "-6987T", "-6988T", "-6989C", "-6990A", "-6991A", "-7005G", "C7006A", "C7014T", "G7026A", "C7078T", "C7084T", "A7085G", "T7117C", "C7127T", "A7129G", "G7132A", "G7142A", "T7144A", "G7145C", "G7146A", "A7148G", "A7149G", "A7151G", "-7152A", "T7153G", "A7154G", "A7155C", "G7160A", "A7161C", "-7162T", "G7183A", "A7197G", "G7238A", "A7239G", "A7246G", "A7255G", "C7264T", "A7281G", "G7283A", "T7284C", "A7289C", "G7309A", "A7315G", "T7321C", "G7369A", "A7402G", "T7403C", "G7440T", "G7442A", "G7459A", "T7462C", "G7517C", "A7532C", "C7541A", "A7542G", "G7552A", "A7589G", "C7597T", "C7625T", "G7627T", "G7628A", "G7630T", "G7633C", "G7658C", "G7677A", "A7689G", "C7699T", "A7700C", "G7701A", "A7706C", "G7712A", "A7714G", "A7721G", "A7722T", "A7734G", "G7735A", "G7754T", "A7765G", "A7782G", "C7801T", "G7831A", "T7864C", "G7873A", "A7921T", "T7930C", "A7931C", "G7977A", "C8009A", "G8017C", "A8019G", "A8029G", "G8030A", "T8032G", "C8033A", "C8047T", "A8055G", "C8063A", "T8067G", "C8071T", "G8076A", "C8077T", "A8079T", "A8086G", "A8093G", "T8094C", "A8099C", "T8101G", "G8102A", "A8111G", "C8119G", "A8120-", "G8121-", "G8122-", "G8123A", "C8126G", "T8127G", "G8128A", "A8129C", "G8130T", "C8145T", "C8167A", "A8168G", "A8180G", "G8199A", "C8213T", "G8255A", "G8288A", "C8291A", "A8294C", "G8317A", "G8350C", "T8369C", "A8372T", "T8375A", "T8384A", "G8402T", "C8406A", "G8432A", "A8446G", "G8458A", "C8460A", "G8462A", "C8499T", "C8504T", "T8505G", "A8522G", "T8558C", "G8561A", "A8597C", "C8607T", "A8608T", "A8636T", "C8676T", "C8741T", "T8758A", "C8771T", "G8774A", "T8786A", "A8804G", "G8822C", "A8837G", "A8844T", "A8882G", "C8883T", "G8885A", "A8892G", "A8893T", "C8904A", "T8914G", "G8933A", "G8935A", "G8942T", "A8953G", "G8970A", "A8971G", "A8977G", "C8978A", "G8991A", "A9005-", "G9006-", "A9007G", "-9009A", "G9013C", "-9014G", "C9016G", "G9033-", "C9039T", "A9041T", "T9068C", "A9082G", "A9095G", "T9108C", "A9131G", "G9132A"], "INT": ["S39N", "L45Q", "V72I", "A98G", "Q136N", "S205A", "T206S", "Y227F", "V234I", "S255N", "D270N"], "RT-p51": ["K20R", "V118I", "V135T", "E138A", "I142T", "C162A", "T200R", "F214L", "D248E", "D250E", "S251H", "K277R", "L283I", "D324E", "G333E", "Q334Y", "F346Y", "T377L", "K390R", "L394H", "D399E", "T403A", "A435M"], "RT-p66": ["K20R", "V118I", "V135T", "E138A", "I142T", "C162A", "T200R", "F214L", "D248E", "D250E", "S251H", "K277R", "L283I", "D324E", "G333E", "Q334Y", "F346Y", "K390R", "L394H", "D399E", "T403A", "A435M", "N447S", "E449D", "R461K", "H483Q", "S491L", "E492K", "K512R", "A554S", "I559V"], "gp120": ["N1S", "A3R", "D4E", "N5D", "E19D", "T21V", "E34D", "E55D", "V57P", "E59V", "N64D", "N71G", "E74D", "T78Q", "I80V", "I81V", "-106L", "-107K", "N108Q", "-109D", "-110S", "V137I", "L142R", "R150K", "P155K", "N159S", "N161K", "S162E", "A176T", "W182F", "D202V", "K204N", "N206T", "T208M", "K212N", "I243V", "S246T", "Q247A", "V264I", "N272S", "D294E", "T308I", "K312T", "L314V", "E315Q", "-319K", "K322L", "S323E", "H324Y", "F325L", "-326L", "N327K", "-328N", "K329T", "S335T", "S337A", "M345T", "N358D", "G361Q", "T387I", "R391K", "I411V", "G430R", "G431H", "N432G", "N433E", "N434A", "-436T", "K448R", "E462R", "Q476R", "V477T", "K479Q"], "gp41": ["R46M", "A47T", "V72L", "K77Q", "Q80R", "N96D", "Q108Y", "D109N", "E110D", "E119Q", "S125N", "N129S", "R133Q", "I135L", "Q137K", "N140V", "K144R", "A151S", "N160S", "M176I", "L206F", "I210L", "G225E", "N239S", "A243T", "L244I", "N251S", "L254I", "F255C", "R258H", "H259L", "I264A", "I266L", "A267T", "I270V", "D272E", "R277G", "A281V", "T289A", "S293G", "S299N", "L304F", "V318I", "V329I", "L330I", "N331H"], "nef": ["G3A", "M20I", "Q35R", "R39K", "L55V", "V85F", "H89F", "E98D", "F139Y", "E160D", "M168L", "K184V", "R188S", "L191R", "R198K", "Q204R"], "p1": ["N9H", "K10S"], "p17": ["A15D", "M31L", "L34I", "L46V", "D47N", "S54P", "R58Q", "K59Q", "L68I", "Q69A", "R76K", "A83V", "Q90R", "V92I", "K95R", "E99D", "T115K"], "p2": ["N9A", "T10S", "-12A"], "p24": ["L6H", "A14P", "L15I", "R154K", "F168W", "A177C", "V230I"], "p6": ["L1P", "T8S", "A12T", "R18G", "I21T", "Q30P", "K31R", "E33K", "G34E", "P49Q", "Q52K"], "p7": ["S4G", "R10Q", "R11K", "I12R", "V13N", "I24L", "R41K"], "pro": ["L10V", "T12K", "V15I", "L19I", "E65D"], "rev": ["S8R", "E11D", "L13I", "K14R", "Y18S", "Y28P", "A54E", "E57Q", "S61D", "S62D", "P67S", "P72H", "P77S", "R80G", "H82R", "N84T", "C85D", "D88G", "Q91E", "E95G", "G96R", "H107S", "E111G"], "tat": ["L3I", "K29Q", "F32Y", "Y35Q", "W36L", "T39A", "R56H", "T58P", "P59H", "Q63P", "P70S", "L74S"], "vif": ["M29V", "R37E", "F39V", "R41K", "H42P", "R47G", "R50K", "E60K", "I87V", "R93K", "R95K", "I109L", "S116T", "E117D", "A123T", "I124L", "H127Y", "I154V", "A155T", "K167Q", "V170T", "E179R", "R181K", "G185E", "N190T"], "vpr": ["A4T", "G6E", "E17D", "L22I", "H45Y", "I60L", "R62K", "L67I", "L68I", "H77Q", "I84M", "R85P", "A93N"], "vpu": ["S2L", "D3P", "L4I", "L5V", "A6-", "I7V", "A8G", "I9V", "A10G", "A19V", "V34L", "K38R", "E44Q", "I46L", "R47I", "M71V", "P76I", "N80H"]}, "labels": {"aa": "INT: S39N, L45Q, V72I, A98G, Q136N, S205A, T206S, Y227F, V234I, S255N, D270N; RT-p51: K20R, V118I, V135T, E138A, I142T, C162A, T200R, F214L, D248E, D250E, S251H, K277R, L283I, D324E, G333E, Q334Y, F346Y, T377L, K390R, L394H, D399E, T403A, A435M; RT-p66: K20R, V118I, V135T, E138A, I142T, C162A, T200R, F214L, D248E, D250E, S251H, K277R, L283I, D324E, G333E, Q334Y, F346Y, K390R, L394H, D399E, T403A, A435M, N447S, E449D, R461K, H483Q, S491L, E492K, K512R, A554S, I559V; gp120: N1S, A3R, D4E, N5D, E19D, T21V, E34D, E55D, V57P, E59V, N64D, N71G, E74D, T78Q, I80V, I81V, -106L, -107K, N108Q, -109D, -110S, V137I, L142R, R150K, P155K, N159S, N161K, S162E, A176T, W182F, D202V, K204N, N206T, T208M, K212N, I243V, S246T, Q247A, V264I, N272S, D294E, T308I, K312T, L314V, E315Q, -319K, K322L, S323E, H324Y, F325L, -326L, N327K, -328N, K329T, S335T, S337A, M345T, N358D, G361Q, T387I, R391K, I411V, G430R, G431H, N432G, N433E, N434A, -436T, K448R, E462R, Q476R, V477T, K479Q; gp41: R46M, A47T, V72L, K77Q, Q80R, N96D, Q108Y, D109N, E110D, E119Q, S125N, N129S, R133Q, I135L, Q137K, N140V, K144R, A151S, N160S, M176I, L206F, I210L, G225E, N239S, A243T, L244I, N251S, L254I, F255C, R258H, H259L, I264A, I266L, A267T, I270V, D272E, R277G, A281V, T289A, S293G, S299N, L304F, V318I, V329I, L330I, N331H; nef: G3A, M20I, Q35R, R39K, L55V, V85F, H89F, E98D, F139Y, E160D, M168L, K184V, R188S, L191R, R198K, Q204R; p1: N9H, K10S; p17: A15D, M31L, L34I, L46V, D47N, S54P, R58Q, K59Q, L68I, Q69A, R76K, A83V, Q90R, V92I, K95R, E99D, T115K; p2: N9A, T10S, -12A; p24: L6H, A14P, L15I, R154K, F168W, A177C, V230I; p6: L1P, T8S, A12T, R18G, I21T, Q30P, K31R, E33K, G34E, P49Q, Q52K; p7: S4G, R10Q, R11K, I12R, V13N, I24L, R41K; pro: L10V, T12K, V15I, L19I, E65D; rev: S8R, E11D, L13I, K14R, Y18S, Y28P, A54E, E57Q, S61D, S62D, P67S, P72H, P77S, R80G, H82R, N84T, C85D, D88G, Q91E, E95G, G96R, H107S, E111G; tat: L3I, K29Q, F32Y, Y35Q, W36L, T39A, R56H, T58P, P59H, Q63P, P70S, L74S; vif: M29V, R37E, F39V, R41K, H42P, R47G, R50K, E60K, I87V, R93K, R95K, I109L, S116T, E117D, A123T, I124L, H127Y, I154V, A155T, K167Q, V170T, E179R, R181K, G185E, N190T; vpr: A4T, G6E, E17D, L22I, H45Y, I60L, R62K, L67I, L68I, H77Q, I84M, R85P, A93N; vpu: S2L, D3P, L4I, L5V, A6-, I7V, A8G, I9V, A10G, A19V, V34L, K38R, E44Q, I46L, R47I, M71V, P76I, N80H"}}}, {"name": "F1_NODE_0000002", "node_attrs": {"div": 0.07356, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A303T", "A417C", "A431G", "-704A", "G716-", "G743A", "T1334C", "C1456-", "C1787T", "T1986C", "C2326T", "T2464G", "T2521C", "T2831C", "A3684G", "C4146G", "G4246A", "C4428T", "C5461A", "T5567A", "G5630C", "C5949G", "A6016G", "T6160C", "-6201A", "-6203G", "C6375A", "G6478A", "A6825T", "A6849C", "A7056G", "G7065A", "G7712C", "G7992A", "T8112C", "G8159T", "A8388G", "G8762A", "G9015-"], "INT": ["A124S"], "RT-p51": ["D123E"], "RT-p66": ["D123E", "L377T", "K530R"], "gp120": ["A32G", "V56I", "T174K", "I281L", "N327-", "K332T", "E401G", "R404Q"], "gp41": ["G230D", "I270T", "G286W"], "nef": ["I16V"], "p17": ["K28Q"], "rev": ["G104V"], "tat": ["I64N"]}, "labels": {"aa": "INT: A124S; RT-p51: D123E; RT-p66: D123E, L377T, K530R; gp120: A32G, V56I, T174K, I281L, N327-, K332T, E401G, R404Q; gp41: G230D, I270T, G286W; nef: I16V; p17: K28Q; rev: G104V; tat: I64N"}}, "children": [{"name": "EU446022", "node_attrs": {"div": 0.12051, "accession": "EU446022", "clade_membership": {"value": "F1"}, "country": {"value": "DE"}, "Strain_name": {"value": "MVP_30846"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T213C", "A214G", "G215A", "A217C", "C219G", "G223-", "A224-", "G226T", "A227T", "A261-", "A286G", "G354A", "A368G", "A388G", "C393T", "G400A", "G401A", "G455A", "T495G", "C558T", "T560G", "G579A", "C583T", "T610A", "A674G", "A675C", "C684A", "G696A", "A776T", "G818A", "G821A", "C926T", "C947T", "G956A", "A1002G", "A1034C", "T1052A", "C1060G", "A1089G", "C1091T", "A1115C", "A1160G", "C1178T", "C1211T", "G1232A", "C1235T", "A1242G", "A1263T", "C1316T", "A1349G", "C1350A", "C1351T", "A1352G", "-1444T", "-1446T", "T1451A", "-1458A", "-1459C", "A1461G", "A1463G", "C1481T", "A1492-", "A1493-", "A1494-", "T1511C", "A1526G", "C1541T", "A1562G", "A1592G", "C1613T", "A1619G", "A1643G", "C1670A", "A1673G", "A1742G", "A1758G", "G1760A", "G1769C", "A1770-", "A1771-", "G1772-", "G1773-", "A1774-", "C1775-", "G1776-", "A1777-", "G1778-", "G1779-", "G1780-", "A1781-", "C1782-", "T1783-", "G1784-", "T1785C", 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K174R, I178L, K211R, F214L, D248N, A286T, G335D, M357R, S359T, I375V, V381I, A435T; RT-p66: K174R, I178L, K211R, F214L, D248N, A286T, G335D, M357R, S359T, I375V, V381I, A435T, S446A, R461K, S468P, H483Y, G490E, I495V; gp120: A3E, K35R, N52S, I56M, N71E, -106V, -107D, -109D, -110N, -111M, -112T, -113E, -122E, -123R, A125V, I126L, Q127K, R138K, K141R, H145S, I153V, N157S, K199Q, N201R, K204Q, E240K, S246C, T275V, R276V, K277E, G293R, D294R, D297N, H302Y, S306N, K312N, -319T, -328N, S336A, I343V, G361E, N364K, -384V, T387I, P389Q, A409S, N414S, N420S, N433D, N435V, -436S, T439I, E462K, E481D; gp41: M4L, L7V, T27M, L54M, V69L, D109E, D113G, N129S, R133S, A156T, D230N, T289I, Q294R, A300T, I301T, N305D, I309V, I332V, L340A; nef: R19K, M20L, R21K, R22Q, D38N, R40W, S46R, G49V, A50T, A83G, V85L, K104R, Q107K; p17: V7I, K18R, R20W, R22K, S54A, V82I, A83V, V92E, D102E, K114Q, Q117K, D121N; p2: A7V, T8S, N9K, A11-, -12T, I13V; p24: I91V, T110S, S120G, E128D, T171A, T178S, P207M, S225G; p6: I21M, -26E, K27Q, Q28E, E29H, Q30P, K31-, D32-, E33-, G34-, L35-, Y36-, A39D, K42R, N47S, Q52*; p7: Q9-, R11K, V13I, R41K; pro: T12V, L19I, N37D, Q61H, L63P, K70E; rev: D7E, S8R, T10A, K14T, Y18I, R48K, A54E, P70S, C89S, T93A, E94K, A108T; tat: L3I, N7D, T19S, T23N, Y35C, Q54K, Q60Y, Q63P; vif: D78E, D113N, H127Q, R128K, I129V, T159A, K167R, R181K, T188S, *193W; vpr: Y15F, N28Q, G41S, A93D; vpu: S2L, D3E, L5A, A6-, I7V, R41S, E44I, P73L"}}}, {"name": "F1_NODE_0000003", "node_attrs": {"div": 0.07929, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["C507A", "A509G", "A569G", "A571T", "T851C", "T1040C", "G1278A", "C1679T", "T1796C", "C1826G", "C1981A", "C1985A", "A1993T", "G2498A", "A2734C", "A3205G", "A3226G", "A3230T", "T3276A", "A3280G", "G3283A", "T3292G", "A3293G", "T3492C", "G3989A", "C4024T", "T4039C", "C4042T", "C4110T", "C4147T", "C4321T", "C4715T", "G4766A", "C5102T", "T5482C", "G5483A", "G5484C", "C5636T", "A5699G", "G6023T", "T6178-", "G6179A", "T6184C", 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"T992G", "G1019A", "A1588G", "C1825A", "A1835G", "G2134A", "C2626A", "A2693G", "C4965T", "C5704G", "A5806G", "G6211-", "G6218-", "A6219-", "G6801A", "T6826A", "T6857C", "A7426G", "T7433C", "A8051C", "G8255A", "A8294C", "C8590G", "G8717A", "G8905C", "T8974G", "G9012C", "G9030T"], "RT-p51": ["D177E"], "RT-p66": ["D177E"], "gp120": ["H145N", "-365D"], "gp41": ["V318I", "N331H"], "nef": ["S45I", "E63D", "R188T"], "p17": ["R76K", "V94I"], "p24": ["H87Q", "M96I", "S225G"], "p6": ["P49Q"], "p7": ["V13I"], "pro": ["L10V", "I13V"], "rev": ["Y18I", "E68T", "T93A"], "vif": ["H127Y"], "vpr": ["H45Y"], "vpu": ["K31R", "L33V", "M71V"]}, "labels": {"aa": "RT-p51: D177E; RT-p66: D177E; gp120: H145N, -365D; gp41: V318I, N331H; nef: S45I, E63D, R188T; p17: R76K, V94I; p24: H87Q, M96I, S225G; p6: P49Q; p7: V13I; pro: L10V, I13V; rev: Y18I, E68T, T93A; vif: H127Y; vpr: H45Y; vpu: K31R, L33V, M71V"}}, "children": [{"name": "F1_NODE_0000005", "node_attrs": {"div": 0.11968, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T153A", "T154G", "A261G", "T308G", "G365C", "G404A", "A426C", "C456T", "G474A", "G508A", "G520C", "G557A", "C558A", "T593C", "G614C", "A656G", "A730T", "A742C", "T748C", "G762A", "C765T", "G771T", "A860G", "T861G", "G869A", "C926T", "C944A", "G956T", "G989A", "A1002G", "C1004T", "C1005G", "A1025T", "C1094T", "G1101A", "G1109A", "C1187T", "G1279A", "G1313A", "A1361C", "G1430A", "A1445-", "A1493G", "G1495A", "A1498G", "T1511C", "A1528T", "C1541A", "G1543A", "G1664A", "C1670T", "T1681C", "C1706T", "G1718A", "A1719C", "G1720T", "A1743-", "C1744-", "C1745-", "-1746A", "-1747C", "-1748T", "C1749G", "T1754C", "C1775G", "G1794A", "C1831G", "A1849G", "A1857G", "C2005T", "A2007G", "T2013C", "A2059G", "T2071C", "G2131A", "A2221G", "T2269C", "G2273A", "A2293G", "C2296T", "A2350G", "A2398G", "T2479C", "T2499C", "G2580A", "T2581C", "C2613A", "A2614G", "A2617G", "A2627T", "C2644T", "T2668A", "A2716C", "T2770C", "G2837A", "G2902A", "G2984A", "C3006A", "G3010A", "A3027G", "C3067A", "G3094A", "A3103G", "G3154A", "T3165C", "G3169A", "T3225G", "T3253C", "G3293A", "G3307T", "C3352T", "A3370G", "C3399T", "G3427A", "T3431G", "C3492T", "G3494A", "A3503G", "T3541G", "T3544A", "G3599A", "C3620A", "A3629C", "T3668C", "G3686A", "A3703G", "C3751T", "A3770G", "C3773T", "C3826T", "T3850C", "C3863T", "A3953G", "T3967C", "T3977C", "C4039T", "G4060A", "C4132T", "C4138T", "G4145A", "G4150T", "T4177A", "T4388G", "A4498G", "C4534T", "G4631A", "C4643T", "A4646C", "G4677A", "A4695G", "G4723A", "G4735A", "C4757T", "A4765C", "A4775T", "A4782G", "C4803A", "G4865A", "G4887A", "G4971A", "T5003C", "G5030A", "G5049C", "G5087A", "G5121A", "G5225A", "A5299G", "C5333T", "G5336C", "A5355C", "C5412T", "C5425A", "G5463A", "G5496A", "G5546A", "G5556C", "C5568T", "A5576C", "G5599T", "T5617A", "G5619A", "C5630G", "T5636C", "C5653G", "T5654C", "A5659T", "G5706A", "A5720G", "G5729A", "A5743T", "G5747T", "G5802A", "A5840T", "A5856G", "G5861A", "C5866A", "A5956C", "T5964C", "G6016A", "C6026T", "A6065G", "T6100C", "C6110G", "C6115T", "T6134A", "C6145T", "C6165G", "G6167A", "-6170G", "-6171C", "-6172C", "T6181C", "A6194G", "-6195T", "T6199C", "A6201G", "T6210C", "G6220-", "C6222-", "C6238T", "A6266C", "G6274A", "T6279A", "C6287T", "A6311C", "G6314A", "A6320C", "T6328-", "T6337-", "G6346A", "A6375G", "G6391A", "G6451A", "A6456G", "T6457G", "C6469T", "G6490A", "G6547A", "A6581G", "C6593G", "G6605A", "C6619T", "C6629A", "A6630G", "T6634C", "A6686-", "G6687-", "T6688-", "T6690-", "C6692G", "A6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701T", "-6702T", "G6716A", "G6773A", "G6808T", "-6809A", "G6821T", "T6823A", "T6824C", "T6827C", "-6833A", "-6834A", "A6836C", "A6837T", "T6838A", "A6840C", "A6842G", "A6845G", "C6849T", "C6856G", "T6860C", "T6863G", "A6881G", "T6898C", "T7003-", "G7004-", "C7006-", "A7007-", "C7008-", "T7009-", "C7078T", "G7079C", "C7108T", "C7123T", "A7135C", "A7155C", "G7168-", "C7174T", "A7190G", "A7197G", "A7246G", "A7290G", "G7291A", "A7299G", "T7322G", "A7428G", "G7440A", "G7441A", "G7453A", "G7459A", "C7469A", "A7590G", "T7624C", "C7625T", "G7627C", "G7628A", "G7630T", "G7660T", "A7668G", "A7688C", "C7690A", "A7691G", "C7692A", "A7711G", "T7796A", "C7825T", "C7843T", "T7864C", "T7877A", "A7936G", "C8005A", "G8050A", "C8112T", "A8117G", "G8144A", "G8170A", "G8173A", "C8213T", "A8219T", "G8276A", "C8277T", "G8279A", "G8280T", "A8323T", "T8384A", "C8386A", "T8387A", "A8400C", "C8406A", "G8476C", "C8499G", "T8505G", "A8519G", "C8552T", "T8582C", "A8652C", "C8661A", "G8666A", "A8701T", "T8711C", "C8741T", "T8757C", "T8759G", "A8801G", "A8805C", "A8837G", "G8875A", "C8903T", "C8904A", "A8912G", "A8972C", "G9008-", "-9009A", "C9016G", "A9019C", "T9073G", "T9074C"], "INT": ["E11D", "P30S", "I60V", "S205A", "T218I", "D286N"], "RT-p51": ["V60I", "V135T", "C162Y", "T173K", "I178L", "D248N", "A297K", "A304E", "K311R", "D324E", "M357T", "T377R", "A400T", "E404D", "A435I"], "RT-p66": ["V60I", "V135T", "C162Y", "T173K", "I178L", "D248N", "A297K", "A304E", "K311R", "D324E", "M357T", "T377R", "A400T", "E404D", "A435I", "S446A", "A466V", "V467I", "T470A", "I482M", "H483Q", "A502T", "Q509K", "K512Q", "V531I", "I559V"], "gp120": ["N1S", "A3-", "D4E", "E34D", "V37A", "N39K", "N71D", "Q86E", "L94I", "T104S", "D105-", "-111N", "-112A", "-113N", "-115S", "-117M", "-118E", "L142Q", "N145S", "I153L", "I156L", "N161T", "N201K", "I243V", "Q247E", "T255I", "H259S", "S278G", "A288T", "G307R", "E315A", "-319T", "F325L", "T330E", "T332-", "N334Q", "S335P", "S336P", "S337A", "I343V", "-366T", "A409P", "N434T", "-436D", "E438D", "K448R", "K479R", "K482R"], "gp41": ["L7V", "N42S", "Q56K", "N96S", "Q108Y", "D109N", "E119D", "N129Q", "T130E", "S165T", "S192T", "T270I", "N272D", "A281T", "L304F", "T306S", "A325I", "G326I", "L340F"], "nef": ["A15E", "M20L", "L55V", "V85L", "K104Q", "Q107K", "F139L", "K155Q", "R178K", "K182R"], "p17": ["D47N", "R58K", "G62A", "L75I", "E93D", "Y132F"], "p2": ["T8N", "N9T", "T10-", "A11-"], "p24": ["Q4P", "L6P", "V11I", "H12Y", "A14S", "S44A", "D71E", "E75D", "I91V", "P92A", "E98D", "V124I"], "p6": ["L1P", "S14L", "P23A", "D32E", "G34L", "A39T", "S51-"], "p7": ["R10K", "R26K"], "pro": ["K20R", "K70R", "I72T"], "rev": ["K14T", "R53S", "E90G", "S99D", "A108T", "V109I"], "tat": ["Q17K", "Q60P", "N67T", "Q76R"], "vif": ["K37G", "S46N", "R50K", "E60A", "I66V", "H73N", "G101N", "A155P", "E179K"], "vpr": ["G6E", "G41S", "Q77H", "I84L"], "vpu": ["L4I", "A8G", "V10A", "L16A", "I18L", "K38R", "I46L", "R47I", "D78-"]}, "labels": {"aa": "INT: E11D, P30S, I60V, S205A, T218I, D286N; RT-p51: V60I, V135T, C162Y, T173K, I178L, D248N, A297K, A304E, K311R, D324E, M357T, T377R, A400T, E404D, A435I; RT-p66: V60I, V135T, C162Y, T173K, I178L, D248N, A297K, A304E, K311R, D324E, M357T, T377R, A400T, E404D, A435I, S446A, A466V, V467I, T470A, I482M, H483Q, A502T, Q509K, K512Q, V531I, I559V; gp120: N1S, A3-, D4E, E34D, V37A, N39K, N71D, Q86E, L94I, T104S, D105-, -111N, -112A, -113N, -115S, -117M, -118E, L142Q, N145S, I153L, I156L, N161T, N201K, I243V, Q247E, T255I, H259S, S278G, A288T, G307R, E315A, -319T, F325L, T330E, T332-, N334Q, S335P, S336P, S337A, I343V, -366T, A409P, N434T, -436D, E438D, K448R, K479R, K482R; gp41: L7V, N42S, Q56K, N96S, Q108Y, D109N, E119D, N129Q, T130E, S165T, S192T, T270I, N272D, A281T, L304F, T306S, A325I, G326I, L340F; nef: A15E, M20L, L55V, V85L, K104Q, Q107K, F139L, K155Q, R178K, K182R; p17: D47N, R58K, G62A, L75I, E93D, Y132F; p2: T8N, N9T, T10-, A11-; p24: Q4P, L6P, V11I, H12Y, A14S, S44A, D71E, E75D, I91V, P92A, E98D, V124I; p6: L1P, S14L, P23A, D32E, G34L, A39T, S51-; p7: R10K, R26K; pro: K20R, K70R, I72T; rev: K14T, R53S, E90G, S99D, A108T, V109I; tat: Q17K, Q60P, N67T, Q76R; vif: K37G, S46N, R50K, E60A, I66V, H73N, G101N, A155P, E179K; vpr: G6E, G41S, Q77H, I84L; vpu: L4I, A8G, V10A, L16A, I18L, K38R, I46L, R47I, D78-"}}, "children": [{"name": "MF109434", "node_attrs": {"div": 0.1412, "accession": "MF109434", "clade_membership": {"value": "F1"}, "country": {"value": "GB"}, "date": {"value": 2014.0}, "Strain_name": {"value": "13659_1_45.3"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G455A", "C590A", "G620A", "A647G", "A666-", "G667-", "T668-", "C669-", "A670-", "G671-", "C672-", "A673-", "A674-", "C731T", "T746C", "C748A", "T749G", "G1090A", "A1106G", "A1271T", "G1346A", "A1391C", "-1458A", "-1459C", "G1489A", "G1527A", "A1703G", "A1740G", "C1756T", "G1778A", "G1779C", "G1780A", "A1781G", "T1790C", "G1826-", "T1827-", "A1828-", "A1832G", "G1942A", "G2023A", "G2038A", "A2203G", "C2211A", "A2233G", "T2237A", "C2281T", "G2422A", "T2520C", "T2542C", "A2560G", "A2580T", "C2596T", "A2629G", "A2743C", "G2842A", "C2985G", "A3062C", "A3079G", "T3132G", "A3179T", "G3520A", "A3616G", "G3679A", "G3766A", "A3808C", "G3836T", "C4129T", "G4146A", "T4291C", "A4315G", "C4525T", "A4598G", "T4678G", "T4679G", "A4693G", "T4703G", "T4775G", "T4805C", "A4808C", "A4901C", "A4951G", "G4969A", "A5054C", "A5055C", "A5056T", "C5132T", "T5188C", "T5206C", "G5226A", "A5233G", "T5254C", "T5275G", "G5296A", "A5335G", "G5359A", "G5370A", "C5437T", "A5462G", "C5495A", "C5530T", "C5544A", "A5567G", "G5596A", "T5599A", "C5612A", "A5613C", "G5614-", "A5615-", "T5616-", "A5626G", "G5730C", "G5737A", "G5775A", "A5793G", "A5849T", "A5861-", "C5862-", "A5863G", "A5866T", "A6009G", "A6060G", "C6097T", "T6163C", "T6169C", "G6170A", "C6171T", "A6179-", "C6181-", "C6184T", "A6185C", "-6198G", "C6202-", "G6203-", "G6204-", "C6205-", "A6206-", "C6208-", "A6209-", "C6210-", "G6224C", "G6225A", "G6226A", "A6232G", "C6233A", "T6310C", "A6323-", "A6324-", "T6325-", "A6326-", "A6327-", "A6329-", "A6330-", "T6331-", "A6332-", "G6333-", "T6334-", "A6335-", "A6336-", "A6338-", "G6339-", "G6392A", "A6669G", "C6717T", "T6733A", "A6786C", "A6798T", "G6856A", "C6858-", "A6859-", "C6860-", "C6862T", "C6864T", "A6944-", "A6945-", "T6946-", "G7056A", "A7148-", "A7149-", "T7150-", "A7151-", "T7153-", "A7154-", "C7155-", "T7156-", "A7157-", "A7158-", "T7159-", "G7160-", "A7161-", "A7163-", "C7164-", "T7165-", "-7168C", "G7199A", "G7232A", "G7390A", "A7411C", "C7433T", "A7616-", "A7617-", "T7618-", "G7657A", "A7820T", "A7822G", "G7831A", "C7941A", "A7943G", "G7946C", "G7947A", "T7968C", "A8019C", "C8033T", "C8169T", "C8171A", "T8182C", "T8200G", "T8210C", "G8264A", "G8274C", "C8296T", "A8370C", "G8408-", "A8409-", "C8410-", "C8411-", "C8412-", "C8413-", "T8414-", "C8415-", "C8422T", "T8440C", "G8441A", "G8465A", "G8534A", "G8535-", "A8536-", "A8537-", "T8552G", "A8560G", "A8617G", "A8636T", "A8750C", "T8770A", "A8819G", "G8917A", "G8935A", "T8946-", "T8947-", "C8948-", "T8949-", "A8950-", "C8951-", "C8952-", "A8953-", "A8954-", "G8955-", "A8956-", "C8957-", "T8958-", "G8959-", "C8960-", "T8961-", "G8962-", "A8963-", "C8964-", "A8965-", "C8966-", "A8967-", "G8968-", "A8969-", "G8970-", "A8971-", "C8972-", "C8975G", "G8981C", "G8982T"], "INT": ["A21S", "S124N", "M275V"], "RT-p51": ["T39K", "S48T", "I142T", "Y162F", "E207D", "K297R", "K323Q", "F346C", "T362S"], "RT-p66": ["T39K", "S48T", "I142T", "Y162F", "E207D", "K297R", "K323Q", "F346C", "T362S"], "gp41": ["N105-", "M118I", "K122R", "I173L", "M176I", "P213Q", "R214G", "G215Q", "I222T", "N239T", "L244F", "T289I", "Q290K", "S299R", "A321T", "R324T"], "nef": ["I10L", "T23-", "P24-", "P25-"], "p17": ["M31L", "S111-", "Q112-", "Q113-"], "p2": ["-12T"], "p24": ["P6Q", "S120N", "E180D"], "p6": ["I21V", "P25L", "L34Q", "*50W"], "p7": ["G8D", "E21I"], "pro": ["V10-", "T12A"], "rev": ["T10E", "E11K", "I18V", "I21L", "K30E", "E32G", "G33A", "E57D", "S62F", "D99N", "T108K", "S112P"], "tat": ["P21S", "K29R", "T40K", "R52W", "R57K", "P60H", "N64S", "D80N", "S87P"], "vif": ["V31R", "K36R", "F39L", "N101S", "Q105H", "K122R", "R128K", "K157L"], "vpr": ["P10S", "S41N", "Y45H", "H77R", "R85Q", "V89I"], "vpu": ["D3-", "I7V", "R41N", "E44K", "-78V", "N81I"]}, "labels": {"aa": "INT: A21S, S124N, M275V; RT-p51: T39K, S48T, I142T, Y162F, E207D, K297R, K323Q, F346C, T362S; RT-p66: T39K, S48T, I142T, Y162F, E207D, K297R, K323Q, F346C, T362S; gp41: N105-, M118I, K122R, I173L, M176I, P213Q, R214G, G215Q, I222T, N239T, L244F, T289I, Q290K, S299R, A321T, R324T; nef: I10L, T23-, P24-, P25-; p17: M31L, S111-, Q112-, Q113-; p2: -12T; p24: P6Q, S120N, E180D; p6: I21V, P25L, L34Q, *50W; p7: G8D, E21I; pro: V10-, T12A; rev: T10E, E11K, I18V, I21L, K30E, E32G, G33A, E57D, S62F, D99N, T108K, S112P; tat: P21S, K29R, T40K, R52W, R57K, P60H, N64S, D80N, S87P; vif: V31R, K36R, F39L, N101S, Q105H, K122R, R128K, K157L; vpr: P10S, S41N, Y45H, H77R, R85Q, V89I; vpu: D3-, I7V, R41N, E44K, -78V, N81I"}}}, {"name": "F1_NODE_0000006", "node_attrs": {"div": 0.12389, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A461T", "T476C", "A513T", "A563G", "A678G", "G987C", "A1124G", "G1301A", "A2297G", "A2317G", "A2715C", "C3075T", "A3124G", "A3164G", "G3292A", "G3442A", "A4030G", "C5125T", "C5237T", "A5431G", "G5704A", "G5839A", "-6173A", "-6175T", "-6178T", "A6186G", "-6207G", "-6212A", "A6288C", "C6618T", "A6826C", "C6843A", "A6854C", "-6947G", "-6949C", "-6950T", "-6951C", "-6971A", "-6973T", "-6974A", "-6975C", "-7162T", "A7799C", "A8143G", "A8152G", "A8342G", "C8450T", "G8462A", "G8531T"], "RT-p51": ["K43N", "S68G", "E207A", "A327V", "T357A"], "RT-p66": ["K43N", "S68G", "E207A", "A327V", "T357A"], "p17": ["E42D", "I60L", "T115A"], "p6": ["-26Q", "Q28E", "E33G", "L35Y", "Y36P"], "rev": ["I102V"], "tat": ["T19A", "R56H", "T58K"], "vif": ["K63N", "T180I"], "vpu": ["V33I"]}, "labels": {"aa": "RT-p51: K43N, S68G, E207A, A327V, T357A; RT-p66: K43N, S68G, E207A, A327V, T357A; p17: E42D, I60L, T115A; p6: -26Q, Q28E, E33G, L35Y, Y36P; rev: I102V; tat: T19A, R56H, T58K; vif: K63N, T180I; vpu: V33I"}}, "children": [{"name": "MK177827", "node_attrs": {"div": 0.14602, "accession": "MK177827", "clade_membership": {"value": "F1"}, "country": {"value": "ES"}, "date": {"value": 2015.0}, "Strain_name": {"value": "P4346"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T456C", "A474G", "T495A", "G542A", "G579T", "C583T", "C590T", "A607G", "A682C", "T718C", "G908A", "C950T", "T988A", "A1073G", "C1118T", "T1244C", "A1271G", "A1397C", "T1409C", "T1421G", "A1452T", "-1458A", "-1459G", "A1562G", "G1588A", "C1615A", "A1715G", "A1746G", "A1794G", "G1841A", "G1845A", "A1920G", "C2013T", "A2224T", "C2479T", "C2503T", "T2597C", "G2602A", "A2678C", "T2737G", "G2833T", "A2836G", "A2864G", "A2920G", "G2921A", "C2975T", "C2978T", "C2985A", "G3019A", "G3168A", "A3192G", "T3307G", "A3316G", "T3328C", "A3400G", "T3566C", "A3599G", "A3607G", "G3755A", "T3820C", "C3823T", "T3847C", "T3970C", "G4084A", "C4444T", "G4498A", "C4646T", "A4677G", "C4765A", "G4767A", "T4820G", "G4856A", "G4888A", "G4953A", "G5057A", "A5065G", "G5131C", "G5140A", "A5159G", "A5191G", "T5209G", "A5230G", "A5277G", "A5278G", "T5281C", "A5282T", "A5285T", "T5292C", "A5376G", "T5384C", "A5463G", "C5482T", "A5491G", "G5543A", "A5546G", "A5555G", "A5557G", "C5576A", "C5612T", "T5616C", "A5626T", "C5824-", "C5825-", "T5826-", "T5827C", "T5828C", "A5830T", "A5848C", "C5862A", "C5869T", "G5912C", "G5960A", "T5971A", "T5973A", "A5983G", "T6025G", "-6174A", "-6176G", "-6177T", "-6180G", "C6183G", "-6198A", "C6205A", "C6208A", "-6211A", "-6213C", "-6214C", "A6275C", "A6314G", "C6322G", "A6326G", "-6328G", "T6331C", "A6336C", "-6337A", "A6338G", "G6339A", "-6340A", "G6375A", "A6406C", "A6451G", "G6456A", "C6670T", "A6753G", "A6798C", "A6806C", "C6836A", "G6842A", "-6948A", "-6952A", "-6953G", "-6954C", "-6955T", "-6956A", "-6957C", "-6958T", "-6959G", "-6960A", "-6961A", "-6962A", "-6963A", "-6964T", "-6965A", "-6966A", "-6967T", "-6968G", "-6969A", "-6970A", "-6972C", "-6976T", "T7015C", "A7026G", "A7040G", "C7045A", "G7072A", "-7152A", "C7164A", "-7168T", "A7241G", "G7246A", "G7256A", "T7308C", "G7309A", "G7322T", "A7396G", "G7495A", "C7561A", "G7594A", "A7621G", "T7625C", "C7627A", "A7628G", "G7640A", "C7651T", "G7701A", "G7720A", "A7722T", "C7801A", "C7805T", "A7858G", "T7866A", "T7929A", "A7931T", "G7942A", "A7943C", "A8018G", "G8036A", "T8112C", "A8163C", "A8184G", "A8272G", "A8276G", "A8279C", "A8387G", "C8410A", "A8469G", "C8476T", "C8504T", "C8581A", "G8590C", "G8595T", "T8741C", "C8835T", "T8864C", "A8887G", "C8948T", "-9008A"], "INT": ["D11E"], "RT-p51": ["I195L", "F214L", "I257V", "V276I", "P294S", "R358K", "K366R", "D404E", "I435M"], "RT-p66": ["I195L", "F214L", "I257V", "V276I", "P294S", "R358K", "K366R", "D404E", "I435M", "S491P", "T502A", "A554T"], "gp120": ["-3K", "A20P", "E36K", "V40D", "N108-", "-114V", "-116S", "K141Q", "N158E", "S162E", "D251N", "T253A", "K300R", "R316Q", "-326N", "-327I", "-328T", "E330V", "-367E", "-368N", "-369N", "-370E", "-371T", "I396V", "N397K", "M406I", "T437N", "N446D", "I463V", "V468I"], "gp41": ["V2A", "V7L", "Y108Q", "N109D", "D113N", "K122R", "R133K", "N140I", "N166Q", "F188Y", "L209H", "I210F", "N239D", "V245I", "I270T", "N287T", "Q294R", "I325V", "I326L"], "nef": ["T23N", "I43V", "S53A", "T80N", "Y120F"], "p17": ["M31L", "N47D", "S54T", "V82L", "A83V", "K91R", "-124A", "-125S", "V128-", "S129-"], "p2": ["T9S", "-10S"], "p24": ["V86Q"], "p6": ["T22A", "T39A", "-51*"], "p7": ["E21V", "R41K", "T50N"], "pro": ["V15I", "G16E", "K41R", "T72I"], "rev": ["T14A", "Y28F", "K30E", "E32T", "E57G", "C63Y", "E105D"], "tat": ["L3P", "H36Y", "T39A", "P59T", "S61R", "T67N", "L74I", "R78H"], "vif": ["A60E", "E61K", "D78E", "A123T", "K160R", "G182A", "G185E"], "vpr": ["T19A", "E58G", "I60L", "I61L", "I63T", "N91D"], "vpu": ["S2L", "I7L", "R41K", "D60E", "A61L", "E62A", "E63A", "A65G", "A66E", "L67V", "-69P", "E70F", "V71P", "P73I", "F74I", "I75N", "P76H", "G77-", "I79-", "N80-", "N81-"]}, "labels": {"aa": "INT: D11E; RT-p51: I195L, F214L, I257V, V276I, P294S, R358K, K366R, D404E, I435M; RT-p66: I195L, F214L, I257V, V276I, P294S, R358K, K366R, D404E, I435M, S491P, T502A, A554T; gp120: -3K, A20P, E36K, V40D, N108-, -114V, -116S, K141Q, N158E, S162E, D251N, T253A, K300R, R316Q, -326N, -327I, -328T, E330V, -367E, -368N, -369N, -370E, -371T, I396V, N397K, M406I, T437N, N446D, I463V, V468I; gp41: V2A, V7L, Y108Q, N109D, D113N, K122R, R133K, N140I, N166Q, F188Y, L209H, I210F, N239D, V245I, I270T, N287T, Q294R, I325V, I326L; nef: T23N, I43V, S53A, T80N, Y120F; p17: M31L, N47D, S54T, V82L, A83V, K91R, -124A, -125S, V128-, S129-; p2: T9S, -10S; p24: V86Q; p6: T22A, T39A, -51*; p7: E21V, R41K, T50N; pro: V15I, G16E, K41R, T72I; rev: T14A, Y28F, K30E, E32T, E57G, C63Y, E105D; tat: L3P, H36Y, T39A, P59T, S61R, T67N, L74I, R78H; vif: A60E, E61K, D78E, A123T, K160R, G182A, G185E; vpr: T19A, E58G, I60L, I61L, I63T, N91D; vpu: S2L, I7L, R41K, D60E, A61L, E62A, E63A, A65G, A66E, L67V, -69P, E70F, V71P, P73I, F74I, I75N, P76H, G77-, I79-, N80-, N81-"}}}, {"name": "MN486030", "node_attrs": {"div": 0.1489, "accession": "MN486030", "clade_membership": {"value": "F1"}, "country": {"value": "BE"}, "date": {"value": 2017.0}, "Strain_name": {"value": "CH"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "C365G", "C379A", "G394A", "A404G", "C417A", "A418G", "G424A", "C426A", "G431A", "G438A", "G579A", "A605G", "G608A", "G609A", "G651A", "G683A", "T749C", "A866G", "G911A", "T983C", "T988C", "C1175T", "A1242G", "T1325C", "C1360A", "-1455G", "-1456C", "A1492C", "T1501C", "T1528A", "A1541T", "A1543G", "A1619G", "C1724A", "G1766A", "A1793G", "A1804G", "G1826A", "T1827G", "T1830A", "G1835A", "G1858A", "A2032G", "G2059A", "A2075C", "A2134G", "C2211G", "G2221A", "A2224C", "A2230G", "A2519G", "T2579C", "C2581T", "A2612G", "G2614C", "G2683A", "T2689C", "A2925G", "A2950G", "C2975A", "A2977T", "G2980A", "A3001G", "A3025G", "G3043A", "A3051T", "C3056T", "A3109G", "A3241T", "G3280A", "G3340A", "T3469C", "G3643A", "A3655G", "A3666T", "A3761G", "A3808T", "A3825G", "T3863C", "G3869A", "G3884A", "G3925A", "A3985G", "T4039C", "C4141T", "A4564G", "A4644T", "T4712C", "T4717A", "A4721T", "A4769G", "C4827T", "C4907T", "A4952T", "T4965A", "T5027C", "C5038A", "G5131A", "A5200G", "A5215G", "T5239C", "G5299A", "T5439C", "T5479C", "C5481A", "A5483T", "C5484T", "C5492T", "C5495G", "G5499A", "T5515C", "C5544A", "A5548C", "G5558A", "T5620G", "G5623A", "A5689T", "A5729G", "G5749A", "A5750T", "A5896G", "C5956T", "A6020G", "T6023C", "T6024C", "T6109C", "-6174T", "-6176A", "-6177A", "A6179G", "-6180C", "C6183A", "T6187C", "G6188A", "C6189G", "A6192C", "G6194A", "T6195A", "C6196T", "A6197G", "-6198C", "G6201A", "G6203A", "-6211T", "-6213T", "-6214G", "-6215G", "-6216A", "-6217G", "-6218G", "-6219A", "-6220A", "-6221C", "-6222C", "A6261C", "A6265G", "G6267A", "T6271C", "C6305A", "T6315C", "A6323G", "T6325G", "-6328C", "G6333A", "-6337G", "-6340C", "A6354G", "A6394G", "C6446T", "A6465G", "C6559T", "C6586T", "A6605G", "G6611A", "A6714G", "C6777A", "A6778G", "A6801G", "G6803A", "T6932A", "A6937T", "-6948G", "-6972G", "-6976C", "-6977C", "-6978A", "-6979A", "-7000T", "-7001A", "-7002A", "-7003T", "-7004A", 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"-123P", "E136A", "R138Q", "L151I", "V154T", "S160N", "N167S", "K174R", "K201R", "K204R", "Q287R", "V317I", "-327N", "-328L", "K329T", "I331V", "S360T", "D365S", "T385-", "R391K", "G431S", "N433T", "D438-", "T439-", "K474R"], "gp41": ["K77R", "S96N", "E110D", "D119E", "N166H", "T192A", "I193V", "A267V", "W286G", "S306T", "A321V", "V329I", "F340L"], "nef": ["V16I", "A27R", "G29R", "I45T", "A83G", "K107R", "E108-", "I133T", "E151Q", "N162S", "R182V", "H199Y"], "p17": ["V7I", "A15E", "R20Q", "Q28R", "R30K", "V35I", "V82I", "V92I", "E106K"], "p2": ["-10A"], "p24": ["V86P", "T171A", "T210N"], "p6": ["F15L", "K42R", "*50E", "-51R"], "p7": ["Q9P", "I12T", "K26R"], "pro": ["V10R", "V11E", "V13I", "I93L"], "rev": ["A15T", "I21L", "Y28H", "S53R", "T68A", "V104G"], "tat": ["Y35Q", "H36L", "T39I", "T40R", "Y47H", "S61N", "L74S", "R76Q"], "vif": ["T20S", "V31I", "F44Y", "E45D", "K122N", "Y127N", "T151K", "G182D"], "vpu": ["L5V", "A6T", "I28L", "E48I", "-78I"]}, "labels": {"aa": "INT: N17S, S30P, V32I, V37I, M50I; RT-p51: T39R, I142V, Y162H, K173D, K277R, P294T, K297T, Y319F, P321S; RT-p66: T39R, I142V, Y162H, K173D, K277R, P294T, K297T, Y319F, P321S, Q524L, I556V; gp120: -3T, I56V, -106A, -109A, -110T, -114S, -116T, -122E, -123P, E136A, R138Q, L151I, V154T, S160N, N167S, K174R, K201R, K204R, Q287R, V317I, -327N, -328L, K329T, I331V, S360T, D365S, T385-, R391K, G431S, N433T, D438-, T439-, K474R; gp41: K77R, S96N, E110D, D119E, N166H, T192A, I193V, A267V, W286G, S306T, A321V, V329I, F340L; nef: V16I, A27R, G29R, I45T, A83G, K107R, E108-, I133T, E151Q, N162S, R182V, H199Y; p17: V7I, A15E, R20Q, Q28R, R30K, V35I, V82I, V92I, E106K; p2: -10A; p24: V86P, T171A, T210N; p6: F15L, K42R, *50E, -51R; p7: Q9P, I12T, K26R; pro: V10R, V11E, V13I, I93L; rev: A15T, I21L, Y28H, S53R, T68A, V104G; tat: Y35Q, H36L, T39I, T40R, Y47H, S61N, L74S, R76Q; vif: T20S, V31I, F44Y, E45D, K122N, Y127N, T151K, G182D; vpu: L5V, A6T, I28L, E48I, -78I"}}}]}]}, {"name": "F1_NODE_0000007", "node_attrs": {"div": 0.09878999999999999, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T200G", "T201C", "T372C", "C379A", "A380C", "A410G", "G413A", "C486T", "A607G", "T610A", "G612A", "G677A", "A697C", "A1073G", "G1192A", "-1444T", "-1446C", "C1447A", "A1536C", "A1642G", "C1670G", "G1709A", "A1742G", "C1775A", "G1845A", "G2038A", "A2362G", "C2596A", "T2654C", "C2671T", "G2707A", "A2716G", "C2734G", "G2914A", "G3019A", "A3398G", "A3454G", "A3484G", "T3541C", "G3574A", "C3577T", "G3631A", "C3712T", "G3766A", "G3919A", "A4003T", "C4006T", "A4021C", "A4066T", "G4146C", "T4412C", "T4428C", "C4501G", "G4549A", "G4864A", "C4890A", "A5086G", "C5237T", "C5248T", "A5268T", "A5282T", "A5325G", "T5327G", "G5336A", "G5359C", "A5372G", "G5382A", "C5383A", "A5461G", "A5462C", "C5563A", "A5587G", "A5613T", "G5631A", "A5644G", "T5684C", "A5760G", "C5924T", "A5958G", "T6024G", "T6025G", "T6166-", "-6195G", "A6209-", "C6233A", "C6287A", "A6327G", "T6409C", "A6415C", "A6438T", "G6458A", "A6465C", "G6490T", "C6499T", "T6511C", "T6590A", "A6595G", "G6611A", "-6689A", "-6691A", "A6790C", "T6794C", "G6820A", "C6858A", "-6992A", "-6993C", "A7040G", "C7084T", "A7158G", "-7162T", "G7269A", "A7281G", "A7289G", "C7597T", "C7642A", "C7678T", "G7717A", "A7734T", "G7735A", "C7742A", "A7921T", "C8009A", "C8047T", "G8134A", "A8168G", "A8184G", "A8216G", "T8218C", "G8476T", "C8499T", "T8640C", "A8653G", "T8786C", "A8874G", "C8952A", "A8954G", "G8955A", "-9014G", "-9015T", "C9016A", "C9018A"], "INT": ["S124A"], "gp120": ["K35R", "-107K", "Q127K", "N157-", "S162E", "Y195F", "D202N", "K204T", "K212N", "S246T", "S335Q", "-383N", "-384D", "R391K", "I396V", "N435S", "R472K", "Q476R", "K479G"], "gp41": ["K46R", "D113E", "K144I", "Q147K", "T289A", "Q294R", "N305D"], "nef": ["A83G", "K104R", "R178G", "Q204K"], "p1": ["K4R"], "p17": ["A15D", "K91R", "V92E", "E93K", "D121A", "K122A", "G123K"], "p2": ["A7V", "T8Q"], "p24": ["R154K"], "p6": ["I21T", "-26Q", "Q30E", "K31Q", "D32G", "E33Q"], "p7": ["R11K", "I24L"], "pro": ["G16E"], "rev": ["A54E", "P67S", "G96R", "H107R"], "tat": ["L3I", "Q63K", "K71E"], "vif": ["R93K", "L102T", "I129V"], "vpr": ["E55V", "I60L", "I74V", "I84T", "R85P", "A93N"], "vpu": ["I13V", "V26A"]}, "labels": {"aa": "INT: S124A; gp120: K35R, -107K, Q127K, N157-, S162E, Y195F, D202N, K204T, K212N, S246T, S335Q, -383N, -384D, R391K, I396V, N435S, R472K, Q476R, K479G; gp41: K46R, D113E, K144I, Q147K, T289A, Q294R, N305D; nef: A83G, K104R, R178G, Q204K; p1: K4R; p17: A15D, K91R, V92E, E93K, D121A, K122A, G123K; p2: A7V, T8Q; p24: R154K; p6: I21T, -26Q, Q30E, K31Q, D32G, E33Q; p7: R11K, I24L; pro: G16E; rev: A54E, P67S, G96R, H107R; tat: L3I, Q63K, K71E; vif: R93K, L102T, I129V; vpr: E55V, I60L, I74V, I84T, R85P, A93N; vpu: I13V, V26A"}}, "children": [{"name": "F1_NODE_0000008", "node_attrs": {"div": 0.10519999999999999, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G401A", "G455A", "T495C", "T572C", "C926T", "G1067T", "A1205G", "G1313A", "C1331A", "T1409C", "C1536T", "C1598T", "A1731G", "G1760A", "G1776C", "A2314G", "C2613T", "A2677G", "G2686A", "T2689C", "A2925G", "G3168A", "A3214C", "A3264G", "G3684A", "T4717A", "G5143A", "T5245C", "A5448T", "C5482T", "A5687T", "G5747T", "A6008G", "G6028A", "A6136G", "A6182G", "-6207C", "-6209C", "-6211G", "-6212A", "-6214G", "-6215G", "-6216A", "-6217A", "-6218G", "-6219A", "-6221C", "G6226A", "G6339A", "G6451A", "C6777T", "T6824C", "G6936A", "-6986A", "-6987A", "-6988T", "-6991C", "-6999C", "-7001A", "-7002A", "-7152A", "A7161C", "A7300G", "A7641G", "G7701A", "A7846G", "T7932C", "G7947A", "G8133T", "A8311C", "G8487A", "G8531T"], "RT-p51": ["T173I", "K277R", "R358K", "Q373H", "K390R"], "RT-p66": ["T173I", "K277R", "R358K", "Q373H", "K390R", "H483Q", "R530K"], "gp120": ["N52D", "D105N", "-122E", "-123P", "T308I", "G361E", "-378N", "-380T"], "gp41": ["D109E", "E113G", "R133K", "I210T", "G215E", "R277T"], "nef": ["G49R"], "p17": ["S54P"], "p6": ["R18G"], "rev": ["E95D"], "tat": ["H36Y", "S75P", "D80N"], "vif": ["F44Y", "S186N"], "vpu": ["Y27F", "R47I"]}, "labels": {"aa": "RT-p51: T173I, K277R, R358K, Q373H, K390R; RT-p66: T173I, K277R, R358K, Q373H, K390R, H483Q, R530K; gp120: N52D, D105N, -122E, -123P, T308I, G361E, -378N, -380T; gp41: D109E, E113G, R133K, I210T, G215E, R277T; nef: G49R; p17: S54P; p6: R18G; rev: E95D; tat: H36Y, S75P, D80N; vif: F44Y, S186N; vpu: Y27F, R47I"}}, "children": [{"name": "DQ979025", "node_attrs": {"div": 0.13229999999999997, "accession": "DQ979025", "clade_membership": {"value": "F1"}, "country": {"value": "ES"}, "Strain_name": {"value": "X1093_2"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T95A", "A261G", "G404A", "A423C", "A425C", "G508A", "A584C", "C603A", "G620A", "A638G", "T641C", "A680G", "C697A", "A810G", "C823G", "G829A", "C1051G", "C1065G", "A1066C", "A1089G", "C1229T", "-1458A", "-1459G", "A1467G", "A1475C", "C1490T", "T1501A", "C1571T", "A1657G", "A1733G", "C1751G", "T1752G", "A1793G", "C1795A", "C1853T", "T1996C", "C2211T", "A2212G", "A2241G", "A2305G", "G2392A", "T2393C", "G2422A", "G2464T", "T2632C", "C2638T", "T2719C", "G2725A", "A2764G", "G2837A", "A2937G", "A3037G", "C3095T", "A3097C", "A3156C", "T3165A", "A3216G", "T3225A", "C3303T", "A3430C", "G3438A", "G3508A", "T3544G", "G3679A", "A3703G", "G3775A", "A3783T", "A3825G", "C3826T", "C4039T", "A4063C", "G4145A", "C4146A", "G4183A", "A4189C", "G4267A", "G4294A", "A4325G", "T4388G", "G4459A", "A4492C", "A4498C", "C4569T", "G4607A", "G4631A", "G4696A", "C4771A", "T4820G", "T4891C", "G4949A", "T4965G", "T4967G", "A5061G", "G5066A", "G5128A", "A5159G", "T5237C", "C5251T", "T5282C", "A5284C", "A5312G", "T5357G", "G5372A", "A5383C", "T5384C", "A5385C", "T5391C", "G5461A", "C5462A", "A5491G", "C5551T", "G5556C", "A5566G", "A5567T", "C5568G", "A5601G", "C5612T", "G5619A", "A5646G", "G5647A", "C5653G", "T5654G", "A5659C", "C5678T", "T5688G", "G5706A", "A5720G", "G5730A", "A5751G", "A6045C", "A6050G", "C6087A", "A6130G", "G6133A", "A6152T", "-6166A", "G6167A", "A6179-", "T6181-", "G6188T", "-6198C", "G6203A", "-6213G", "T6271C", "A6275C", "T6279G", "T6295A", "C6305G", "A6332G", "A6336C", "A6338G", "-6340G", "T6460C", "C6496T", "T6545A", "C6563T", "A6573G", "A6639C", "A6695T", "G6773A", "A6789C", "G6807A", "-6809A", "C6810A", "A6818-", "A6819G", "A6820G", "C6822T", "T6823C", "-6830C", "-6831C", "-6832C", "A6848G", "T6938C", "-6947G", "-6948A", "-6949C", "-6950A", "-6951C", "-6979A", "-6980G", "-6981G", "-6982A", "-6983T", "-6984C", "-6985C", "-6989G", "-6990G", "-6994T", "-6995A", "-6996T", "-6997C", "-6998A", "-7000T", "-7005A", "C7012T", "A7044G", "C7045A", "C7078T", "C7127A", "A7129G", "T7150A", "A7151G", "G7160T", "T7162G", "T7165C", "C7170T", "T7204C", "G7256A", "A7275G", "A7373C", "G7440A", "A7525G", "A7620G", "A7688G", "A7747C", "G7765A", "A7799C", "A7818G", "G7883A", "T7921G", "A8009C", "A8143G", "G8144A", "G8170T", "A8204G", "G8212A", "C8213T", "C8223T", "G8242A", "A8297G", "A8323C", "A8378G", "C8415T", "A8420G", "A8425C", "T8440C", "G8458A", "T8476C", "G8488A", "C8491A", "T8499G", "C8504T", "T8505G", "G8507A", "G8534A", "G8554A", "A8591G", "C8648T", "A8656G", "A8750C", "A8762T", "G8787C", "A8788C", "A8806G", "C8825T", "T8864G", "A8887T", "C8905A", "G8909A", "A8922C", "A8965C", "C8966A", "A8967-", "G8991A", "T8993C", "G8994A", "A9019G", "C9039T", "T9040A", "A9042-"], "INT": ["D3V", "N17S", "E96D", "A124N", "E138D", "N184D", "S205A", "A265V", "D278N", "D286N"], "RT-p51": ["T39M", "K49R", "E123D", "V135I", "D248N", "K281R", "Q334Y", "Y354S", "M357K", "K374R", "T377K", "T403I"], "RT-p66": ["T39M", "K49R", "E123D", "V135I", "D248N", "K281R", "Q334Y", "Y354S", "M357K", "K374R", "T377K", "T403I", "R448K"], "gp120": ["N64T", "N66D", "T78K", "T100S", "-106A", "K107N", "N108S", "-109N", "-110S", "-111S", "-112T", "-113N", "-114S", "-115T", "-116L", "-117R", "-118E", "K141Q", "L142R", "L151V", "-157N", "N158S", "S160G", "N161T", "L231M", "E240G", "E262A", "G307R", "K312T", "R316Q", "R318K", "-319K", "K322-", "T332A", "-366T", "-376G", "-377S", "-379G", "-381I", "-382T", "N397R", "L425M", "N432K", "N433D", "-436S", "T439I", "V468I", "K474R"], "gp41": ["I24L", "R46K", "K106R", "N129D", "E148D", "N166H", "K172R", "V194I", "T277I", "A281T", "I301V", "L304F", "T307I", "I332V", "L340F"], "nef": ["P25S", "E28A", "V33A", "R39K", "I45T", "R49K", "A50D", "S53A", "L55V", "R71K", "K105R", "D149P", "K155R", "D174E", "K182M", "T188H", "I194L"], "p1": ["N9S"], "p17": ["R58K", "Q90K", "A121D", "A122K", "K123G"], "p2": ["A11S"], "p24": ["I27V", "A31G", "S33N", "T107S", "Q112A", "S120G", "N183S"], "p6": ["T21M", "S24A", "K27E", "E29K", "A39D"], "p7": ["M1V", "K3N", "I12N"], "rev": ["T10A", "K14T", "I18C", "E54A", "T68A", "S99D", "A108S"], "tat": ["I3P", "K24N", "T39A", "P59S", "Q60H", "N64V"], "vif": ["A62D", "D78E", "Y127E", "T159A", "K167R", "R181K"], "vpr": ["T19A", "Y45H", "I70V", "T84M", "N93T", "S94R", "S96P"], "vpu": ["S2F", "V14I", "L16G", "I18L", "T24I", "F27L", "K38R"]}, "labels": {"aa": "INT: D3V, N17S, E96D, A124N, E138D, N184D, S205A, A265V, D278N, D286N; RT-p51: T39M, K49R, E123D, V135I, D248N, K281R, Q334Y, Y354S, M357K, K374R, T377K, T403I; RT-p66: T39M, K49R, E123D, V135I, D248N, K281R, Q334Y, Y354S, M357K, K374R, T377K, T403I, R448K; gp120: N64T, N66D, T78K, T100S, -106A, K107N, N108S, -109N, -110S, -111S, -112T, -113N, -114S, -115T, -116L, -117R, -118E, K141Q, L142R, L151V, -157N, N158S, S160G, N161T, L231M, E240G, E262A, G307R, K312T, R316Q, R318K, -319K, K322-, T332A, -366T, -376G, -377S, -379G, -381I, -382T, N397R, L425M, N432K, N433D, -436S, T439I, V468I, K474R; gp41: I24L, R46K, K106R, N129D, E148D, N166H, K172R, V194I, T277I, A281T, I301V, L304F, T307I, I332V, L340F; nef: P25S, E28A, V33A, R39K, I45T, R49K, A50D, S53A, L55V, R71K, K105R, D149P, K155R, D174E, K182M, T188H, I194L; p1: N9S; p17: R58K, Q90K, A121D, A122K, K123G; p2: A11S; p24: I27V, A31G, S33N, T107S, Q112A, S120G, N183S; p6: T21M, S24A, K27E, E29K, A39D; p7: M1V, K3N, I12N; rev: T10A, K14T, I18C, E54A, T68A, S99D, A108S; tat: I3P, K24N, T39A, P59S, Q60H, N64V; vif: A62D, D78E, Y127E, T159A, K167R, R181K; vpr: T19A, Y45H, I70V, T84M, N93T, S94R, S96P; vpu: S2F, V14I, L16G, I18L, T24I, F27L, K38R"}}}, {"name": "FJ900267", "node_attrs": {"div": 0.13602999999999998, "accession": "FJ900267", "clade_membership": {"value": "F1"}, "country": {"value": "AO"}, "date": {"value": 2006.0}, "Strain_name": {"value": "AO_06_ANG40"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T396C", "G400A", "G407A", "G424A", "A426C", "C456G", "A562G", "T571A", "G579A", "C583T", "T641G", "G689A", "A764G", "A766T", "A797C", "T798A", "G799T", "A854T", "G869A", "A881G", "A891T", "T978G", "C1091T", "G1101A", "A1160G", "G1199A", "A1208G", "C1211T", "A1217G", "A1242G", "C1243T", "C1261G", "A1263T", "A1271T", "G1277A", "G1279A", "C1304T", "T1344A", "A1411G", "G1443A", "-1455G", "-1456C", "T1511C", "A1607G", "G1725A", "T1741C", "C1796T", "C1831T", "A1857G", "A1861G", "C1903G", "C2005T", "G2021A", "G2023A", "A2056G", "C2296T", "G2464A", "A2498G", "A2508C", "A2518G", "C2575T", "C2605T", "G2610A", "A2626G", "A2627T", "C2694A", "G2705A", "A2727G", "T2779A", "C2822T", "C2848T", "C2885T", "C2968A", "A3058C", "A3082C", "T3225C", "G3226A", "C3394T", "C3399T", "A3435G", "A3449C", "C3492T", "T3493G", "G3523A", "T3544A", "A3745G", "A3795G", "G3916A", "T3977C", "A3985C", "G3997A", "A4178G", "G4475A", "A4498G", "G4616A", "T4656C", "G4673A", "A4695G", "G4727A", "A4751G", "G4764A", "A4788C", "C4844A", "A4890C", "G4969C", "C5038G", "A5046G", "A5058C", "C5062T", "G5086A", "G5087A", "T5209G", "C5221T", "A5246C", "A5272G", "A5305G", "C5314A", "G5330A", "T5356C", "C5359T", "T5371G", "T5439C", "A5447C", "T5451C", "G5463C", "C5481T", "C5492T", "A5493G", "C5495A", "G5496A", "G5543A", "G5556A", "A5564C", "A5567C", "C5568T", "C5585G", "G5599T", "A5601T", "T5602C", "T5616C", "T5620G", "C5624T", "G5629T", "G5650C", "G5711A", "G5712A", "G5729A", "G5730T", "A5733G", "G5737A", "G5839A", "C5862A", "G5864A", "G5949C", "A5957G", "G5958A", "A5959G", "A5985G", "G6016A", "G6029A", "A6030G", "A6073G", "C6110G", "A6159T", "A6164-", "C6165-", "G6167-", "A6168-", "T6169-", "-6176A", "-6177A", "-6178A", "-6180A", "C6184A", "C6189T", "A6192C", "A6194T", "G6195T", "C6196T", "A6197G", "-6198A", "T6199A", "-6213A", "A6233C", "A6236G", "C6278T", "G6327T", "A6330C", "G6333A", "T6334G", "-6340C", "C6412T", "C6465T", "A6508G", "T6523C", "T6577C", "C6631T", "T6658C", "A6659T", "A6684G", "A6776C", "C6790A", "A6801G", "A6805G", "A6806C", "G6808T", "-6809G", "T6815C", "T6825A", "T6829C", "-6833C", "-6834C", "T6838G", "G6935A", "-6989A", "-6990A", "-6994A", "-6995G", "-6996A", "-6997A", "-6998C", "-7000C", "-7005G", "C7018T", "C7124T", "A7149C", "T7150G", "A7154C", "T7156G", "C7171A", "A7216G", "G7238C", "G7293A", "T7322C", "G7369A", "T7386C", "A7456G", "G7519A", "A7532C", "A7542G", "G7630A", "C7651T", "A7667C", "A7668G", "T7678C", "A7688T", "A7706C", "A7721G", "C7755A", "T7877G", "C7935T", "A7937C", "A8002G", "G8017C", "A8019G", "T8037C", "G8050A", "A8055G", "A8117G", "C8119G", "T8133C", "G8269A", "G8288T", "C8294A", "G8329A", "C8331G", "G8335A", "T8366A", "G8368A", "C8406A", "T8456C", "C8521A", "G8528T", "T8546C", "T8568C", "T8582C", "A8584T", "C8603T"], "INT": ["K7R", "I135V", "V234I", "V281M"], "RT-p51": ["E138A", "R172K", "I178L", "A200E", "E204K", "K211R", "P243S", "D291E", "A435V"], "RT-p66": ["E138A", "R172K", "I178L", "A200E", "E204K", "K211R", "P243S", "D291E", "A435V", "N447S", "K452Q", "A466V"], "gp120": ["A3E", "D4N", "G32A", "R35E", "H44R", "E59R", "Q86E", "N102I", "T104K", "-106L", "N108E", "K127Q", "N128D", "N159I", "S160T", "N161K", "E162N", "T204M", "T269S", "K277R", "L281I", "I308L", "-319A", "S323A", "L324Q", "-326P", "-327K", "E361K", "D365-", "-379N", "-381E", "-382P", "D384G", "N432T", "N434Q", "-436A", "E462Q", "G479E", "R480K"], "gp41": ["V28A", "K77Q", "Q80R", "K122R", "N129Y", "I135L", "N140D", "A151E", "S192A", "L206F", "P211L", "S212R", "N239S", "V245A", "N251S", "N272E", "V329F", "H331N", "A343G"], "nef": ["S8R", "S9N", "A60E", "E62D", "Y81F"], "p17": ["R22K", "R30K", "M31L", "L41V", "K76R", "F79Y", "V82I", "A83V", "D102E", "-124G"], "p2": ["V7I"], "p24": ["H12L", "W23M", "T54S", "L83V", "Q112H", "V124I", "T171V", "A177G", "T178S", "E180D", "L205M", "K227R"], "p6": ["G16R", "Q28E", "E30G", "S51L"], "pro": ["K20R", "D35E", "V75I"], "rev": ["I18L", "Q24E", "K30T", "I52V", "E57Q", "E90G", "Q91E"], "tat": ["K24T", "K29A", "T39M", "T40K", "R56H", "K63T", "N64T", "P70R", "Q76Y"], "vif": ["M29I", "K37G", "E60K", "T68P", "T102L", "R128T", "T151R", "I154V", "K158Q", "T159I"], "vpr": ["N48H", "P85L", "V89G"], "vpu": ["L5V", "A6V", "A8S", "A15P", "R35K", "R41N", "E44K", "D78N"]}, "labels": {"aa": "INT: K7R, I135V, V234I, V281M; RT-p51: E138A, R172K, I178L, A200E, E204K, K211R, P243S, D291E, A435V; RT-p66: E138A, R172K, I178L, A200E, E204K, K211R, P243S, D291E, A435V, N447S, K452Q, A466V; gp120: A3E, D4N, G32A, R35E, H44R, E59R, Q86E, N102I, T104K, -106L, N108E, K127Q, N128D, N159I, S160T, N161K, E162N, T204M, T269S, K277R, L281I, I308L, -319A, S323A, L324Q, -326P, -327K, E361K, D365-, -379N, -381E, -382P, D384G, N432T, N434Q, -436A, E462Q, G479E, R480K; gp41: V28A, K77Q, Q80R, K122R, N129Y, I135L, N140D, A151E, S192A, L206F, P211L, S212R, N239S, V245A, N251S, N272E, V329F, H331N, A343G; nef: S8R, S9N, A60E, E62D, Y81F; p17: R22K, R30K, M31L, L41V, K76R, F79Y, V82I, A83V, D102E, -124G; p2: V7I; p24: H12L, W23M, T54S, L83V, Q112H, V124I, T171V, A177G, T178S, E180D, L205M, K227R; p6: G16R, Q28E, E30G, S51L; pro: K20R, D35E, V75I; rev: I18L, Q24E, K30T, I52V, E57Q, E90G, Q91E; tat: K24T, K29A, T39M, T40K, R56H, K63T, N64T, P70R, Q76Y; vif: M29I, K37G, E60K, T68P, T102L, R128T, T151R, I154V, K158Q, T159I; vpr: N48H, P85L, V89G; vpu: L5V, A6V, A8S, A15P, R35K, R41N, E44K, D78N"}}}]}, {"name": "F1_NODE_0000009", "node_attrs": {"div": 0.10259999999999998, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G987C", "T988C", "A1340G", "-1458A", "A1733-", "A2548G", "T3230A", "A4555G", "A4766G", "A4769G", "G4856A", "T4868C", "A4951G", "C5544A", "A5689T", "T6210-", "G6263A", "-6340T", "G6466A", "T6610C", "A6682G", "G6797A", "T6823-", "-6830C", "G7630T", "C7699T", "G8317A", "C8415G", "G8595C"], "RT-p51": ["C379S"], "RT-p66": ["C379S"], "gp120": ["K312N", "F325L"], "nef": ["P25A", "V85L"], "p24": ["V86P"], "rev": ["T10E", "K14R"], "tat": ["K29V"], "vif": ["K122R"], "vpu": ["I28L"]}, "labels": {"aa": "RT-p51: C379S; RT-p66: C379S; gp120: K312N, F325L; nef: P25A, V85L; p24: V86P; rev: T10E, K14R; tat: K29V; vif: K122R; vpu: I28L"}}, "children": [{"name": "FJ900266", "node_attrs": {"div": 0.13823999999999997, "accession": "FJ900266", "clade_membership": {"value": "F1"}, "country": {"value": "AO"}, "date": {"value": 2006.0}, "Strain_name": {"value": "AO_06_ANG32"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["C393A", "G401A", "G410A", "A413G", "G424A", "A426T", "A440G", "A464T", "G474A", "T571A", "C583T", "A619G", "G620T", "G651A", "A659G", "C662T", "C688T", "G690A", "T695A", "C697T", "C698G", "A700C", "G703C", "-705G", "-706C", "-707T", "T718C", "T722C", "C747T", "C774A", "A968G", "T978G", "C1005G", "T1028A", "G1129T", "G1232A", "A1242T", "C1243G", "A1278G", "C1334T", "A1349G", "C1350T", "C1357G", "A1359T", "A1361G", "C1362A", "T1385C", "A1452G", "-1459G", "A1496G", "T1501C", "A1589G", "A1656C", "-1733G", "A1743-", "C1744-", "C1745-", "-1746C", "-1747C", "-1748T", "T1752C", "C1796T", "A1867G", "T1873C", "A1927G", "A1968G", "C2003T", "T2013C", "G2027A", "T2104C", "G2117A", "C2149T", "A2203G", "A2210G", "C2211A", "A2227G", "A2230G", "A2293G", "T2323C", "T2443C", "A2498G", "C2500T", "C2527T", "T2542G", "A2616G", "T2671C", "G2683A", "G2725A", "C2797T", "A2881G", "T2905C", "T2917C", "A2918C", "A2925G", "C2958G", "A2959G", "A3019G", "A3097C", "G3099A", "T3118C", "T3165G", "A3193G", "G3205A", "A3218G", "C3266T", "G3293A", "T3376C", "T3431G", "G3438A", "G3442A", "G3483A", "C3485G", "G3490A", "T3497C", "G3508A", "A3562G", "A3574C", "A3601C", "A3655G", "G3796A", "A3964G", "A3989G", "C3995A", "T4006G", "G4150A", "T4177A", "G4183A", "T4234C", "T4240C", "A4376G", "G4459A", "G4464A", "A4474T", "A4498G", "A4561G", "G4673A", "A4695G", "T4701G", "A4737G", "C4761T", "G4764A", "A4765G", "G4767A", "C4771A", "T4776C", "C4803A", "T4820G", "A4858T", "G4871T", "G4887A", "A4911C", "A4937G", "A4952G", "T4985C", "G5049C", "C5050A", "G5057A", "A5061G", "C5062T", "G5128A", "G5176A", "T5224C", "G5225A", "T5245C", "A5246C", "T5248A", "C5251A", "G5267T", "A5272G", "A5284G", "A5293G", "C5303A", "A5305G", "A5335C", "T5356C", "C5412T", "T5442C", "G5463T", "C5478T", "C5482T", "A5491G", "C5492G", "G5538A", "C5568T", "T5689C", "G5700A", "G5711A", "G5717A", "A5720G", "C5769A", "G5781T", "A5787T", "T5788G", "T5789C", "G5790A", "C5792A", "A5793G", "C5795A", "C5797T", "T5799G", "G5801C", "G5802A", "G5806C", "G5808T", "-5815G", "-5816A", "-5817A", "-5818G", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5840G", "C5866A", "C5884A", "G5962A", "G6024T", "G6029A", "A6059C", "G6133A", "A6158C", "C6165A", "-6166G", "-6170G", "-6171C", "-6172C", "-6173A", "-6174A", "-6175C", "-6176A", "-6177C", "-6178C", "-6180G", "A6182T", "A6186C", "C6189A", "C6190A", "T6193C", "-6198C", "A6201C", "C6205A", "-6207G", "C6208A", "-6221G", "C6247T", "A6276G", "C6278T", "T6298C", "A6329G", "T6337C", "C6347T", "G6391A", "C6412A", "T6418C", "C6469T", "A6538C", "T6607C", "A6684G", "A6695C", "A6751G", "C6766T", "A6775G", "A6776G", "C6777A", "A6778C", "T6793C", "A6797C", "C6800A", "-6809G", "A6819-", "A6820-", "G6821-", "C6822-", "T6824-", "T6825A", "T6828C", "-6831T", "-6832T", "-6833C", "-6834T", "T6835A", "A6848G", "C6849T", "-6947A", "-6948A", "-6949C", "-6950A", "-6951G", "-6952T", "-6977G", "-6978A", "-6979T", "-6980A", "-6981C", "-6982C", "-6983T", "-6984C", "-6985A", "-6986A", "-6987A", "-6988C", "-6989A", "-6990G", "-6991A", "-6994T", "T7003-", "G7004-", "C7006-", "A7007-", "C7008-", "T7009-", "C7012T", "A7026G", "A7085G", "C7096A", "T7114C", "A7151-", "T7153-", "G7160C", "T7165C", "A7241C", "C7250T", "A7275G", "C7280A", "A7290C", "C7328T", "G7441A", "A7456G", "C7463A", "G7508C", "A7542G", "A7583C", "A7629C", "T7681C", "A7700G", "G7701A", "C7712A", "A7741G", "A7742C", "A7744G", "T7774C", "A7782G", "T7796A", "C7805T", "T7921G", "G7980A", "G8001A", "A8002G", "A8019G", "A8029G", "G8030C", "T8047C", "A8134C", "C8169T", "G8173A", "G8208A", "A8254G", "A8255G", "C8265T", "T8302C", "G8330A", "C8331T", "T8332A", "T8366C", "G8388A", "A8390C", "A8438C", "C8450T", "G8479A", "G8487A", "A8525G", "G8531C", "T8567C", "A8584T", "T8594G", "A8597C"], "INT": ["I72V", "L74M", "I201V", "S230N"], "RT-p51": ["V8I", "T39E", "K174R", "K275Q", "K277R", "A288G", "Q334H", "G335E", "M357R", "I375V", "T377M", "A400T"], "RT-p66": ["V8I", "T39E", "K174R", "K275Q", "K277R", "A288G", "Q334H", "G335E", "M357R", "I375V", "T377M", "A400T", "S446A", "R448K", "R463K", "Q464E", "S468P"], "gp120": ["D4E", "W57L", "E59K", "K69Q", "N102H", "T104K", "-106A", "K107N", "N108T", "-109S", "-110S", "-111T", "-112E", "-113N", "-114S", "-115T", "V137I", "K141R", "-157D", "N158S", "K277R", "T308D", "E315Q", "R316K", "-319A", "-328N", "T332V", "D365N", "N383S", "K391R", "I411V", "N414K", "N433-", "-436H", "I463L", "K474R", "G479A"], "gp41": ["L9F", "L54M", "V69L", "Q80R", "T94P", "D109A", "R133E", "Q137K", "K147Q", "N160S", "S165T", "G226D", "R233K", "N239S", "A243P", "R277S", "A289V", "S302N", "I318V", "A321V", "A343I"], "nef": ["V16I", "S46N", "G49R", "Y81F"], "p1": ["N9H"], "p17": ["R30K", "M31L", "D47N", "F79Y", "A83V", "K95S", "E106K", "A121-", "A122-", "K123-", "V128-"], "p2": ["T10-", "-12S"], "p24": ["L6F", "L15I", "L83V", "P92A", "W133L", "T171C", "N183G", "P207S", "A209G", "T210S", "L211I"], "p6": ["T21M", "T22P", "S24P", "Q28E", "E30G"], "p7": ["I12T"], "pro": ["K57R", "H69Y", "I72T", "V77I"], "rev": ["S8N", "I52V", "S61A", "S67P", "T68A", "V109I"], "tat": ["V29A", "H36Y", "T39G"], "vif": ["M29I", "K37G", "F39V", "I51V", "E60R", "E61K", "A62D", "H73N", "D78E", "Q91L", "R95S", "G101S", "T102M", "I109L", "A155H", "T159V", "K167R", "R181K"], "vpr": ["G41S", "N48Q", "V55L", "I63M", "L67M", "Q77P"], "vpu": ["R35K", "R37K", "K38R", "E58D", "A66E", "D78G"]}, "labels": {"aa": "INT: I72V, L74M, I201V, S230N; RT-p51: V8I, T39E, K174R, K275Q, K277R, A288G, Q334H, G335E, M357R, I375V, T377M, A400T; RT-p66: V8I, T39E, K174R, K275Q, K277R, A288G, Q334H, G335E, M357R, I375V, T377M, A400T, S446A, R448K, R463K, Q464E, S468P; gp120: D4E, W57L, E59K, K69Q, N102H, T104K, -106A, K107N, N108T, -109S, -110S, -111T, -112E, -113N, -114S, -115T, V137I, K141R, -157D, N158S, K277R, T308D, E315Q, R316K, -319A, -328N, T332V, D365N, N383S, K391R, I411V, N414K, N433-, -436H, I463L, K474R, G479A; gp41: L9F, L54M, V69L, Q80R, T94P, D109A, R133E, Q137K, K147Q, N160S, S165T, G226D, R233K, N239S, A243P, R277S, A289V, S302N, I318V, A321V, A343I; nef: V16I, S46N, G49R, Y81F; p1: N9H; p17: R30K, M31L, D47N, F79Y, A83V, K95S, E106K, A121-, A122-, K123-, V128-; p2: T10-, -12S; p24: L6F, L15I, L83V, P92A, W133L, T171C, N183G, P207S, A209G, T210S, L211I; p6: T21M, T22P, S24P, Q28E, E30G; p7: I12T; pro: K57R, H69Y, I72T, V77I; rev: S8N, I52V, S61A, S67P, T68A, V109I; tat: V29A, H36Y, T39G; vif: M29I, K37G, F39V, I51V, E60R, E61K, A62D, H73N, D78E, Q91L, R95S, G101S, T102M, I109L, A155H, T159V, K167R, R181K; vpr: G41S, N48Q, V55L, I63M, L67M, Q77P; vpu: R35K, R37K, K38R, E58D, A66E, D78G"}}}, {"name": "F1_NODE_0000010", "node_attrs": {"div": 0.10847999999999998, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G508A", "G689A", "A839G", "A1002T", "G1277A", "G1279A", "G1734-", "A1735-", "C2605T", "A2626C", "G2714A", "T3566C", "G3686A", "A4111G", "T4388G", "C4444T", "G4696A", "T4776G", "T4891C", "T4914C", "A4937C", "G5140A", "C5462T", "G5629T", "G5668A", "G5704T", "A6050G", "A6179G", "-6180C", "T6181C", "C6184T", "T6199A", "C6222A", "G6303A", "A6320C", "A6806G", "G6807A", "C6810G", "A6811C", "G6814A", "T6815G", "A6817T", "-6831C", "-6832C", "T6860C", "G6935A", "-6994A", "-6995G", "-6997A", "-7000C", "-7001A", "-7002A", "-7005A", "A7252G", "A7626T", "G7633C", "G7915A", "G8335A"], "INT": ["I112M", "S205A"], "RT-p51": ["V135I", "E177D"], "RT-p66": ["V135I", "E177D", "S491P", "V531I"], "gp120": ["N66D"], "gp41": ["Q108L", "L206F"], "nef": ["D63E"], "p17": ["R58K", "-124G"], "p24": ["I91F"], "p6": ["K27E", "E29K", "Q31E"], "rev": ["E11D", "I18T"], "vif": ["Y110H", "E117D", "G185E"], "vpu": ["A8S", "V21I", "V33L"]}, "labels": {"aa": "INT: I112M, S205A; RT-p51: V135I, E177D; RT-p66: V135I, E177D, S491P, V531I; gp120: N66D; gp41: Q108L, L206F; nef: D63E; p17: R58K, -124G; p24: I91F; p6: K27E, E29K, Q31E; rev: E11D, I18T; vif: Y110H, E117D, G185E; vpu: A8S, V21I, V33L"}}, "children": [{"name": "FJ900268", "node_attrs": {"div": 0.14423999999999998, "accession": "FJ900268", "clade_membership": {"value": "F1"}, "country": {"value": "AO"}, "date": {"value": 2006.0}, "Strain_name": {"value": "AO_06_ANG58"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G400A", "G424A", "A562G", "T572C", "A581G", "C583T", "A599G", "A605G", "G609A", "A611G", "A612G", "A619G", "G629A", "A632G", "C645T", "A686G", "C694T", "A699C", "A758G", "G771T", "C872T", "G1067T", "C1175T", "C1292T", "A1359T", "A1452C", "-1459T", "A1461C", "A1463C", "C1535T", "C1536G", "C1598T", "A1644C", "T1679C", "T1728-", "T1729-", "C1730-", "A1731-", "G1732-", "G1736-", "A1740C", "T1741C", "C1749T", "T1752C", "C1796T", "A1857G", "T1895C", "C1903T", "T2011C", "G2023A", "C2083T", "A2134G", "A2154G", "T2209C", "A2230G", "A2233G", "G2273A", "T2393C", "A2557G", "C2575T", "G2580A", "A2596C", "T2597C", "A2677G", "A2722G", "A2727G", "A2755G", "T3040C", "T3049C", "G3099A", "G3100T", "T3112C", "T3132A", "G3154A", "T3165G", "T3225C", "G3226A", "G3292A", "C3303T", "A3304G", "A3385G", "C3399T", "A3435G", "G3438A", "C3445A", "A3450G", "A3451G", "A3457T", "C3475T", "A3478G", "C3492T", "C3499T", "G3508A", "T3544A", "A3574G", "A3637G", "C3649T", "G3664A", "C3665A", "G3684A", "A3886G", "G3925A", "G3952A", "A3973T", "T3977C", "C4021A", "A4063C", "C4072T", "C4075T", "T4085C", "C4180T", "A4531G", "T4665C", "C4667T", "C4690T", "A4709G", "G4735A", "C4771A", "A4782G", "C4803A", "C4827A", "G4859A", "A4911C", "T4912A", "A4956T", "A4986G", "C4988A", "A5037G", "A5046G", "A5058C", "A5059G", "G5086A", "G5121A", "G5131A", "A5200G", "G5212A", "C5213A", "C5221T", "C5227A", "C5251T", "T5268A", "T5282A", "G5290A", "T5357G", "C5412A", "T5442C", "C5445A", "T5490C", "C5495T", "A5548T", "A5567G", "C5578T", "A5601G", "A5607C", "T5611A", "C5612T", "T5636C", "A5643C", "G5644A", "A5659C", "T5708C", "G5711A", "A5718G", "G5730A", "G5781T", "G5806A", "A5907G", "C5916A", "A5918C", "T5920C", "T5964C", "C5974T", "T5980A", "A6065G", "A6066G", "C6110G", "A6124T", "A6159T", "-6166G", "-6173A", "-6174A", "-6175G", "-6176A", "-6177A", "-6178T", "G6188T", "C6189A", "A6191T", "C6196A", "-6198G", "A6201G", "C6202A", "C6205-", "A6206-", "C6208-", "G6220-", "G6227A", "C6278A", "T6279C", "A6282G", "G6327A", "A6330G", "G6333A", "A6338G", "G6339A", "T6403A", "A6458G", "A6471G", "G6475A", "A6489C", "T6490A", "A6529G", "C6563T", "G6572A", "C6586A", "C6591G", "C6593A", "T6607A", "A6616C", "C6618T", "T6655C", "C6670T", "A6695C", "C6758T", "A6789C", "A6791G", "A6798C", "A6801G", "G6808-", "-6809A", "C6822A", "-6823A", "T6827C", "T6835G", "A6841T", "C6849A", "A6854G", "A6859C", "C6861A", "A6880G", "G6894T", "T6895G", "A6926G", "G6936A", "-6989A", "-6990A", "-6991C", "-6996T", "-6998A", "-6999C", "C7006A", "G7040A", "A7063G", "A7085G", "T7087G", "C7096T", "C7124T", "-7152G", "A7155C", "A7157G", "G7158A", "C7170T", "A7190G", "A7197G", "C7217T", "A7275G", "T7432C", "A7456G", "A7532C", "G7627A", "A7641G", "A7668G", "A7688G", "C7690T", "C7712A", "A7747C", "C7801T", "G7807A", "A7846G", "C7939G", "G7980A", "G7995A", "A8019G", "A8029G", "G8030T", "C8038G", "G8050A", "A8055G", "G8144A", "C8145T", "A8152G", "C8169T", "G8184A", "G8194A", "C8213T", "T8215A", "G8231A", "T8281G", "C8293T", "A8308G", "A8323C", "G8330T", "C8331G", "C8336A", "T8366C", "T8375G", "G8388A", "A8469G", "G8479A", "T8505A", "G8531A", "G8554A", "G8572A", "A8584T", "C8595T", "A8597T"], "INT": ["M50I", "E96D"], "RT-p51": ["K20R", "V60I", "C162Y", "E207K", "K211R", "G335D", "F346Y", "M357R", "T403M", "A435V"], "RT-p66": ["K20R", "V60I", "C162Y", "E207K", "K211R", "G335D", "F346Y", "M357R", "T403M", "A435V", "N447S", "R448K", "K452R", "K454N", "A466V", "H483Q", "Q524K", "R530K"], "gp120": ["K18R", "T21N", "T22P", "V37A", "N71G", "Q86E", "N102I", "-109A", "-110T", "-117G", "-319S", "L321V", "S323E", "-326P"], "gp41": ["K77Q", "E110D", "E113G", "K122R", "N129D", "Q137K", "E148D", "S212R", "G226D", "R231K", "N239S", "A243S", "N251S", "A281I", "A289V", "R294Q", "V310I", "L340F", "A343C", "L345I"], "nef": ["V16I", "I43V", "S46N", "L55M", "R71K", "R77K", "Y81F", "L85F"], "p1": ["I5L"], "p17": ["R22K", "R30K", "K76R", "A83V", "E92K", "K93E", "K95R", "A119T", "A121V", "K123Q"], "p2": ["T10P", "A11I", "-12L", "I13-"], "p24": ["A14S", "Q112H", "T210S"], "p6": ["G16-", "F17-", "R18G", "E20P", "T22S", "S24P", "P25K"], "p7": ["L24V"], "pro": ["K20R"], "rev": ["T18A", "P31A", "S61V", "L64V", "S99N", "I102V", "E116K"], "tat": ["N12K", "T40M", "T58S", "N64S", "P68S", "A77G"], "vif": ["Y27H", "A35V", "R50K", "A62E", "K63N", "L64K", "I66V", "H73N", "L81M", "I109Q", "I124L", "N134E", "T151A", "I154V", "K158R", "E179K", "G182D"], "vpr": ["G6E", "P37T", "V55E", "L60I", "T84M"], "vpu": ["S2I", "V10A", "L12F", "V13I", "I18L", "V34A", "R35K", "E58D", "V71M"]}, "labels": {"aa": "INT: M50I, E96D; RT-p51: K20R, V60I, C162Y, E207K, K211R, G335D, F346Y, M357R, T403M, A435V; RT-p66: K20R, V60I, C162Y, E207K, K211R, G335D, F346Y, M357R, T403M, A435V, N447S, R448K, K452R, K454N, A466V, H483Q, Q524K, R530K; gp120: K18R, T21N, T22P, V37A, N71G, Q86E, N102I, -109A, -110T, -117G, -319S, L321V, S323E, -326P; gp41: K77Q, E110D, E113G, K122R, N129D, Q137K, E148D, S212R, G226D, R231K, N239S, A243S, N251S, A281I, A289V, R294Q, V310I, L340F, A343C, L345I; nef: V16I, I43V, S46N, L55M, R71K, R77K, Y81F, L85F; p1: I5L; p17: R22K, R30K, K76R, A83V, E92K, K93E, K95R, A119T, A121V, K123Q; p2: T10P, A11I, -12L, I13-; p24: A14S, Q112H, T210S; p6: G16-, F17-, R18G, E20P, T22S, S24P, P25K; p7: L24V; pro: K20R; rev: T18A, P31A, S61V, L64V, S99N, I102V, E116K; tat: N12K, T40M, T58S, N64S, P68S, A77G; vif: Y27H, A35V, R50K, A62E, K63N, L64K, I66V, H73N, L81M, I109Q, I124L, N134E, T151A, I154V, K158R, E179K, G182D; vpr: G6E, P37T, V55E, L60I, T84M; vpu: S2I, V10A, L12F, V13I, I18L, V34A, R35K, E58D, V71M"}}}, {"name": "FJ670516", "node_attrs": {"div": 0.13498999999999997, "accession": "FJ670516", "clade_membership": {"value": "F1"}, "country": {"value": "ES"}, "date": {"value": 2002.0}, "Strain_name": {"value": "ES_X845_4"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G102A", "T103G", "T105G", "T163A", "G167T", "G212A", "G215A", "G455A", "A470C", "C471A", "A510C", "A521G", "T534G", "T539G", "C540A", "A576T", "C577T", "A578G", "G607A", "A632C", "T773A", "C774A", "A776G", "G806A", "T852G", "C853T", "C892G", "T902C", "A914G", "G956A", "C988A", "A1017C", "A1089G", "A1134G", "G1232A", "C1245T", "A1289G", "C1334A", "T1335C", "A1382T", "C1406T", "T1409C", "-1459G", "A1476G", "A1656C", "G1727A", "G1736A", "A1740G", "T1741A", "G1742A", "C1745G", "-1746A", "-1747C", "-1748C", "A1775G", "G1835A", "A1840G", "C1913T", "A2007G", "T2041A", "G2131A", "A2224G", "T2257C", "A2404G", "C2452T", "C2476T", "C2488A", "C2511A", "C2613T", "G2665A", "T2668A", "G2683A", "C2694A", "G2704A", "G2716T", "G2734C", "T2779G", "G2788A", "C2845T", "G2869A", "T3045C", "C3075T", "G3168A", "A3224C", "G3250A", "T3431G", "G3442T", "C3496A", "T3526A", "C3541T", "A3655G", "G3679A", "G3680A", "A3681C", "G3694A", "T3793C", "A3808T", "C3823T", "A3825G", "G3866A", "G3884A", "G4060A", "T4066A", "A4076C", "A4096G", "C4141T", "C4396T", "T4426C", "C4428T", "G4495A", "T4540G", "T4717A", "A4721G", "C4724T", "G4766T", "G4769T", "A4864G", "G4865A", "G4871A", "G4892A", "G4969A", "A5024G", "T5027C", "A5039G", "C5052A", "A5191G", "G5257A", "A5285G", "G5325A", "T5356C", "C5359G", "A5383G", "A5447C", "T5451C", "A5483G", "A5548C", "G5561A", "G5614A", "C5663T", "C5684T", "A5687T", "A5703G", "G5707T", "A5743C", "G5839A", "G5872A", "C5884T", "A5908G", "G5939A", "A6008G", "A6095G", "C6165G", "-6166T", "A6182C", "C6183G", "A6185G", "A6194T", "G6195C", "C6196T", "A6197C", "-6198A", "G6203A", "-6207C", "-6209C", "-6210T", "-6211A", "-6212A", "-6213A", "-6214G", "-6215G", "-6216A", "-6217A", "-6218G", "-6219A", "-6221A", "A6263C", "A6324C", "T6331G", "A6332G", "T6334C", "A6336G", "C6412T", "C6446T", "A6450G", "T6545C", "T6577G", "A6581G", "G6595A", "T6641C", "T6760C", "A6799C", "C6800A", "G6802T", "C6822T", "-6823C", "T6825C", "A6848T", "T6863G", "A6877G", "T6895C", "C6925T", "A6945C", "-6947G", "-6948A", "-6949T", "-6950A", "-6951G", "-6952T", "-6953A", "-6954G", "-6955G", "-6996A", "-6998T", "-6999T", "-7152A", "G7158C", "T7162G", "C7164A", "T7165C", "G7168A", "G7256A", "G7369A", "G7519A", "C7564T", "G7631T", "C7651A", "A7717G", "C7762T", "T7774C", "A7819G", "A8002G", "G8050C", "T8113G", "G8125A", "G8242A", "G8276A", "G8288A", "A8309G", "A8311C", "G8329A", "A8363G", "T8375A", "A8396C", "G8465A", "T8476G", "G8488C", "A8533C", "A8576C", "G8590C", "A8636T", "T8646C", "G8666C", "G8678A", "A8701T", "C8747T", "T8757C", "T8759G", "T8770A", "C8786A", "T8864C", "A8869C", "C8873T", "C8904A", "C8913T", "C8937T", "A8938T", "T8947A", "A8967G", "G8968C", "A8971C", "A8972T", "C8992T", "G9006A", "A9007C", "G9008C", "-9009A"], "INT": ["E11D", "N17S", "V31I", "V37I", "I101L", "T218I", "S255R"], "RT-p51": ["T139K", "T173I", "A200E", "E207N", "V317A", "A327V", "R358K", "T377L"], "RT-p66": ["T139K", "T173I", "A200E", "E207N", "V317A", "A327V", "R358K", "T377L", "S446A", "E449D", "E529T"], "gp120": ["D29N", "N52D", "I81V", "T104S", "-106L", "N108E", "-122E", "-123K", "V137L", "R150K", "I156-", "N158-", "N159-", "S160-", "N161-", "E162-", "Y163-", "R164-", "I166T", "N167S", "K199R", "D241E", "I243V", "S263P", "L281I", "E315N", "R316N", "R318E", "T332S", "S336P", "S337A", "G361R", "N364T", "-366S", "-367R", "-380T", "-381E", "-382F", "S435T", "-436E", "T437N", "V468I"], "gp41": ["E110Y", "A325T", "V329I", "I336V"], "nef": ["E18D", "I45S", "G49A", "E64A", "G83A", "E98D", "Y102H", "E108D", "Y120F", "F139L", "F143Y", "E176A", "H199F", "F202Y"], "p1": ["N9H"], "p17": ["L46I", "K59Q", "S67A", "Q69K", "T81L", "R91K", "E99D"], "p2": ["A11S"], "p24": ["L15M", "S41V", "T54S", "P86Q", "I96L", "S120G", "I135V"], "p7": ["S4G"], "pro": ["V13I", "P39S", "K70R"], "rev": ["V16I", "I52V", "T68P", "C89-", "E90-", "Q91-", "G92-", "A93G", "E95Q", "R96G"], "tat": ["I3V", "K24T", "H36R", "T58P", "S62N"], "vif": ["F44Y", "E60D", "E61D", "L64V", "K93R", "R128K", "P156T", "K167R"], "vpr": ["I61V", "V74M", "P85R", "N93S"], "vpu": ["D3N", "A19V", "A26V", "Y27F", "V34L", "I46L", "D78N"]}, "labels": {"aa": "INT: E11D, N17S, V31I, V37I, I101L, T218I, S255R; RT-p51: T139K, T173I, A200E, E207N, V317A, A327V, R358K, T377L; RT-p66: T139K, T173I, A200E, E207N, V317A, A327V, R358K, T377L, S446A, E449D, E529T; gp120: D29N, N52D, I81V, T104S, -106L, N108E, -122E, -123K, V137L, R150K, I156-, N158-, N159-, S160-, N161-, E162-, Y163-, R164-, I166T, N167S, K199R, D241E, I243V, S263P, L281I, E315N, R316N, R318E, T332S, S336P, S337A, G361R, N364T, -366S, -367R, -380T, -381E, -382F, S435T, -436E, T437N, V468I; gp41: E110Y, A325T, V329I, I336V; nef: E18D, I45S, G49A, E64A, G83A, E98D, Y102H, E108D, Y120F, F139L, F143Y, E176A, H199F, F202Y; p1: N9H; p17: L46I, K59Q, S67A, Q69K, T81L, R91K, E99D; p2: A11S; p24: L15M, S41V, T54S, P86Q, I96L, S120G, I135V; p7: S4G; pro: V13I, P39S, K70R; rev: V16I, I52V, T68P, C89-, E90-, Q91-, G92-, A93G, E95Q, R96G; tat: I3V, K24T, H36R, T58P, S62N; vif: F44Y, E60D, E61D, L64V, K93R, R128K, P156T, K167R; vpr: I61V, V74M, P85R, N93S; vpu: D3N, A19V, A26V, Y27F, V34L, I46L, D78N"}}}]}]}]}]}, {"name": "F1_NODE_0000011", "node_attrs": {"div": 0.08244, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A595G", "A1205G", "A1503G", "A2215T", "A2498C", "G3142A", "G4696A", "A4782G", "A5856G", "A6086G", "C6087A", "-6173A", "-6207C", "T6271C", "T6794A", "C6810A", "-7005G", "A7161G", "-7162G", "G7726A", "C7801T", "C8913T", "G8915T", "G8935A"], "RT-p51": ["E40D", "V135L"], "RT-p66": ["E40D", "V135L"], "gp120": ["N1S", "T78E", "-106L", "K322R"], "nef": ["S53P", "L191F", "R198K"], "p17": ["Y87C", "D102E"], "p7": ["R41K"], "vif": ["I66V"]}, "labels": {"aa": "RT-p51: E40D, V135L; RT-p66: E40D, V135L; gp120: N1S, T78E, -106L, K322R; nef: S53P, L191F, R198K; p17: Y87C, D102E; p7: R41K; vif: I66V"}}, "children": [{"name": "F1_NODE_0000012", "node_attrs": {"div": 0.09049, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G609A", "G989A", "G1192A", "T1501C", "T1574C", "C1598T", "A1701T", "A1743G", "C1833T", "A1835G", "C2485T", "C2575T", "A2612G", "C2613T", "G2683A", "G3004A", "A3071G", "T3121C", "A3224C", "T3225A", "C3303T", "G3307T", "A3651G", "C3756A", "A3825G", "C4258T", "T4412C", "T4776A", "T4840C", "G4862A", "C4943T", "G4971A", "G5049C", "T5384C", "A5396G", "C5397A", "A5491G", "G5543A", "A5575G", "T5684C", "G5784T", "A6044G", "-6175C", "-6177A", "-6178A", "A6194-", "A6323G", "T6328C", "A6573G", "A6806C", "-6809G", "A6818C", "G6821T", "T6825A", "C6922T", "G6936A", "-6949T", "-6950A", "-6951G", "-6952T", "C7096A", "C7170T", "G7269A", "G7440A", "A7620G", "C7642A", "A7676G", "T7685A", "A7688G", "A7706C", "C7742A", "T7774C", "C8169T", "G8170A", "A8364T", "A8469G"], "INT": ["N17S"], "RT-p51": ["T173V", "I326V", "T377Q", "T403I", "E404D"], "RT-p66": ["T173V", "I326V", "T377Q", "T403I", "E404D", "N519S", "A554D"], "gp120": ["N64D", "N157D", "E240G", "-319E", "L324Y", "-327N", "G361E", "N414K", "-436G", "T439I", "R472K"], "gp41": ["K106R", "D109E", "S128T", "N129D", "I135L", "Q147K", "T289I"], "nef": ["S8C", "I43V"], "p17": ["V92I"], "p24": ["R154K"], "p6": ["T8S", "T22A", "Q52*"], "p7": ["I12T"], "pro": ["L10V", "T12I", "I13V"], "rev": ["K14R", "Y18T", "A108T"], "tat": ["L3P", "N7R", "T39A", "R56H", "N67D"], "vif": ["L64I", "V85A", "A155P"], "vpu": ["V26A", "M71V"]}, "labels": {"aa": "INT: N17S; RT-p51: T173V, I326V, T377Q, T403I, E404D; RT-p66: T173V, I326V, T377Q, T403I, E404D, N519S, A554D; gp120: N64D, N157D, E240G, -319E, L324Y, -327N, G361E, N414K, -436G, T439I, R472K; gp41: K106R, D109E, S128T, N129D, I135L, Q147K, T289I; nef: S8C, I43V; p17: V92I; p24: R154K; p6: T8S, T22A, Q52*; p7: I12T; pro: L10V, T12I, I13V; rev: K14R, Y18T, A108T; tat: L3P, N7R, T39A, R56H, N67D; vif: L64I, V85A, A155P; vpu: V26A, M71V"}}, "children": [{"name": "DQ979024", "node_attrs": {"div": 0.12945, "accession": "DQ979024", "clade_membership": {"value": "F1"}, "country": {"value": "ES"}, "Strain_name": {"value": "X1670"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A152T", "A161C", "T258C", "A261G", "G265A", "G404A", "T422C", "G455A", "C462A", "A470G", "C471A", "T473A", "T479C", "C482T", "A491C", "C540T", "A541C", "G620A", "A697C", "T746C", "A899G", "C947T", "T978G", "G1173A", "T1174C", "G1205A", "C1245T", "G1279A", "C1292A", "G1311T", "G1354C", "G1404A", "C1440A", "-1444C", "-1446A", "A1449C", "A1452C", "-1458A", "-1459A", "A1467G", "A1473G", "A1474G", "G1477A", "T1478C", "A1486G", "G1487A", "A1498G", "A1529G", "G1543A", "T1547C", "A1562G", "A1607G", "A1642G", "A1656C", "A1694T", "G1695C", "C1706T", "A1715G", "A1731G", "C1756A", "C1775A", "C1782A", "G1784A", "T1787C", "C1825A", "G1845A", "G1858A", "A1932G", "A1982G", "A2012G", "A2113C", "T2171C", "A2212G", "A2224G", "T2236C", "C2281A", "G2422A", "T2672C", "G2692A", "A2693C", "C2694A", "G2725A", "T2778A", "G2818A", "A2830G", "G2837A", "C2845T", "T3002C", "C3006A", "A3031G", "T3049C", "G3292A", "A3398G", "A3447G", "A3451T", "C3475T", "T3541C", "T3544G", "T3550C", "G3564A", "T3602C", "C3649A", "T3652C", "G3664A", "G3684T", "A3748G", "C3751T", "A3770G", "G3787A", "A3805C", "A3808G", "T3856C", "A3868G", "A3880G", "T3946C", "A3985G", "C3995A", "G3997A", "A4109G", "T4144C", "G4145A", "A4178G", "G4263A", "T4426C", "A4427T", "C4667T", "T4701G", "T4706C", "C4728A", "A4763G", "G4767A", "A4781G", "A4869G", "G4870T", "G4888A", "C4898T", "A4911T", "T4932G", "A4937G", "A4950G", "T4991C", "A4993C", "A5046C", "T5051C", "A5056G", "A5155G", "A5186G", "G5199A", "T5209C", "G5212A", "G5225A", "A5236G", "T5245C", "G5269A", "A5285G", "A5293T", "G5330A", "G5336T", "A5355C", "T5357C", "A5364G", "G5365C", "A5431G", "C5445T", "T5451C", "A5460G", "A5462G", "C5469T", "C5495T", "A5555C", "A5601G", "A5626G", "G5629T", "C5630T", "A5640T", "A5687T", "G5707T", "G5711A", "A5714G", "A5715T", "A5787T", "T5788G", "T5789C", "G5790A", "C5792A", "A5793G", "C5795A", "T5799G", "G5801C", "G5802A", "A5806C", "G5808T", "-5815G", "-5816A", "-5817G", "-5818G", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5830C", "G5836A", "C5884A", "A5955T", "A5957C", "T5964C", "A6015G", "A6092G", "C6116T", "-6170G", "-6171C", "-6172A", "-6174G", "-6176C", "-6180A", "T6181C", "C6183G", "A6186C", "T6187C", "G6188A", "C6189G", "A6192C", "T6193C", "-6194T", "-6195C", "C6196T", "-6198A", "T6199C", "A6201G", "G6203A", "G6204C", "A6209C", "-6212G", "-6213T", "-6214A", "-6215G", "-6216A", "-6217A", "-6221A", "C6222A", "C6228A", "C6233A", "C6247T", "G6263A", "A6276G", "T6279A", "A6281C", "C6322A", "A6326G", "A6327G", "T6331C", "G6333A", "T6337C", "-6340T", "T6358C", "G6425A", "A6456G", "T6457A", "A6462T", "G6475A", "G6490A", "T6523C", "A6535G", "A6538C", "C6548T", "A6570T", "T6607C", "G6649A", "A6684-", "A6685-", "A6686-", "G6687-", "T6688-", "T6690-", "C6692-", "A6693G", "-6697A", "-6698C", "-6699C", "-6700T", "-6701A", "-6702T", "T6745C", "A6776T", "C6777T", "A6785G", "A6786G", "A6790C", "A6794C", "G6797A", "C6800G", "G6808T", "G6814A", "T6821C", "-6833C", "-6834C", "A6841G", "A6848G", "A6850T", "T6932A", "G6935A", "-6947G", "-6948G", "-6980G", "-6981G", "-6982A", "-6983A", "-6984A", "-6985C", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "-6991C", "-6992A", "-6993T", "-6994T", "-6995A", "-6996T", "-6997C", "-6998A", "-6999C", "-7000T", "-7001A", "-7002A", "C7016A", "A7026G", "A7040G", "A7094C", "C7124A", "C7127A", "-7152A", "T7156A", "G7182C", "G7183A", "A7219C", "C7264T", "A7281G", "A7290C", "G7307T", "A7315G", "T7321C", "T7433C", "T7444C", "A7492G", "A7590G", "C7651A", "G7660A", "A7668G", "A7673G", "C7692T", "G7702T", "A7741G", "A7747C", "A7750G", "C7755A", "G7759T", "T7796A", "T7801A", "C7852A", "T7932C", "A7937G", "G7938C", "C7940T", "C7951A", "C7960A", "G7965A", "A8029G", "C8080A", "A8118C", "A8120-", "G8121-", "G8122-", "G8123A", "C8126G", "T8127G", "G8128A", "A8129C", "G8130T", "C8167T", "A8172T", "C8221T", "A8230T", "C8265T", "T8266C", "G8288A", "A8294C", "G8408A", "A8447G", "T8451C", "T8498C", "T8505G", "G8531A", "G8534A", "T8640C", "T8646C", "A8656G", "A8660G", "G8666C", "C8720T", "A8726C", "A8739G", "G8774A", "T8786A", "G8787C", "A8788C", "T8789A", "C8790G", "A8851T", "T8864G", "A8874G", "A8882G", "C8927T", "C8960A", "T8961C", "G8962A", "A8972T", "T8974G", "G8997-", "G9006C", "A9007G", "-9009A", "G9012C", "-9014G", "-9015T", "C9016T", "C9023G", "G9025A", "T9040C"], "INT": ["E10D", "L74I", "I112V", "I135V", "G163E", "T218L"], "RT-p51": ["E6D", "A200Q", "L228H", "D248N", "A304E"], "RT-p66": ["E6D", "A200Q", "L228H", "D248N", "A304E", "K451R", "K452N", "H483Q", "G490E", "R530M", "I559V"], "gp120": ["E34V", "K35Q", "V37A", "Q54R", "W57F", "I80V", "-107V", "N108E", "-122E", "-123K", "A125E", "Q127K", "V137I", "K141R", "L142Q", "K143Q", "N158G", "S160N", "A191T", "N201R", "K203I", "E239V", "T253A", "K277S", "S278-", "I279-", "H280-", "L281I", "-282P", "-283I", "T308L", "N311G", "K312N", "E315K", "R316G", "R322Q", "S323P", "-326P", "T332A", "S360T", "E361K", "-376G", "-377S", "-378G", "-379N", "-380T", "-381N", "-382G", "L388I", "I396V", "K414Q", "L424I", "L425I", "N433K", "G443A", "Q476R", "K479T"], "gp41": ["V2L", "I4M", "N96S", "D113E", "K122R", "I124V", "S125G", "T130I", "R133S", "E148D", "A151E", "L152F", "S165T", "N166K", "I210T", "S212A", "P213S", "G221E", "H259Q", "N272T", "R277I", "Q290L", "A321V", "V329I", "N331H"], "nef": ["L55V", "Y102H", "K105R", "E108D", "I133V", "D149P", "P150A", "Q170L", "D174E", "R178G", "C206*", "*207Q"], "p1": ["K4R", "N9H"], "p17": ["L46I", "E52D", "Q69S", "D121A"], "p2": ["Q6K", "N9H", "T10P", "A11N"], "p24": ["L83V", "V148T", "D187E", "A194S", "G208A"], "p6": ["E6Q", "R18G", "P23-", "S24P", "P25S", "-26Q", "D32E", "L35I", "P49Q"], "p7": ["M1V", "K3G", "S4N", "K7R", "R26K"], "pro": ["G16E", "K45R", "I62V", "I72V"], "rev": ["K30S", "P31L", "S61G", "L78I", "E90D", "E95D", "G96R", "H107Y"], "tat": ["T19A", "K29R", "T40M", "Q60P", "S75P", "A77P", "P81D", "P84Q", "E86K"], "vif": ["F39V", "H48N", "E61K", "R95V", "G101D", "I109L", "S116A", "K122E", "Q136P", "I154L", "K157R", "N190S"], "vpr": ["N28D", "R32K", "G41S", "I61V", "Q77H", "I84L", "R87A"], "vpu": ["I7V", "A8L", "Y27F", "K31R", "V34L", "R35K", "Q36R", "A66E", "I75L", "G77R"]}, "labels": {"aa": "INT: E10D, L74I, I112V, I135V, G163E, T218L; RT-p51: E6D, A200Q, L228H, D248N, A304E; RT-p66: E6D, A200Q, L228H, D248N, A304E, K451R, K452N, H483Q, G490E, R530M, I559V; gp120: E34V, K35Q, V37A, Q54R, W57F, I80V, -107V, N108E, -122E, -123K, A125E, Q127K, V137I, K141R, L142Q, K143Q, N158G, S160N, A191T, N201R, K203I, E239V, T253A, K277S, S278-, I279-, H280-, L281I, -282P, -283I, T308L, N311G, K312N, E315K, R316G, R322Q, S323P, -326P, T332A, S360T, E361K, -376G, -377S, -378G, -379N, -380T, -381N, -382G, L388I, I396V, K414Q, L424I, L425I, N433K, G443A, Q476R, K479T; gp41: V2L, I4M, N96S, D113E, K122R, I124V, S125G, T130I, R133S, E148D, A151E, L152F, S165T, N166K, I210T, S212A, P213S, G221E, H259Q, N272T, R277I, Q290L, A321V, V329I, N331H; nef: L55V, Y102H, K105R, E108D, I133V, D149P, P150A, Q170L, D174E, R178G, C206*, *207Q; p1: K4R, N9H; p17: L46I, E52D, Q69S, D121A; p2: Q6K, N9H, T10P, A11N; p24: L83V, V148T, D187E, A194S, G208A; p6: E6Q, R18G, P23-, S24P, P25S, -26Q, D32E, L35I, P49Q; p7: M1V, K3G, S4N, K7R, R26K; pro: G16E, K45R, I62V, I72V; rev: K30S, P31L, S61G, L78I, E90D, E95D, G96R, H107Y; tat: T19A, K29R, T40M, Q60P, S75P, A77P, P81D, P84Q, E86K; vif: F39V, H48N, E61K, R95V, G101D, I109L, S116A, K122E, Q136P, I154L, K157R, N190S; vpr: N28D, R32K, G41S, I61V, Q77H, I84L, R87A; vpu: I7V, A8L, Y27F, K31R, V34L, R35K, Q36R, A66E, I75L, G77R"}}}, {"name": "JF683771", "node_attrs": {"div": 0.12539, "accession": "JF683771", "clade_membership": {"value": "F1"}, "country": {"value": "CY"}, "date": {"value": 2008.0}, "Strain_name": {"value": "CY222"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G424A", "G508A", "A512G", "A551G", "T571A", "G579A", "C583T", "G595A", "A605G", "G641A", "A652C", "A661C", "A665G", "G771T", "C774A", "G809A", "G818A", "G869A", "T885C", "C897T", "A959G", "A968T", "C1004T", "A1073G", "C1103T", "A1115C", "A1196G", "T1244A", "G1256A", "A1278G", "C1304T", "G1419A", "A1445-", "-1455G", "-1456C", "C1481T", "A1532G", "C1550T", "C1670A", "T1676C", "G1732A", "A1758G", "G1776A", "A1781G", "C1831T", "A1832G", "A1926G", "T2013C", "A2032C", "T2035C", "C2083T", "A2125G", "T2215A", "C2281T", "T2299C", "C2420T", "C2452T", "G2473A", "C2488T", "A2512T", "T2579A", "C2584T", "C2694T", "G2704A", "A2715C", "T2740C", "A2752G", "C2839T", "G2869A", "G2921A", "A2925G", "T2935C", "A2962G", "C2968T", "G2995A", "G2999A", "G3085A", "A3109G", "T3132G", "G3169A", "A3190G", "G3217A", "C3222T", "T3230A", "A3247G", "G3250A", "C3252T", "G3281A", "G3301A", "A3370C", "A3403G", "A3439G", "A3450T", "G3490A", "C3492T", "C3511T", "C3665A", "A3666G", "A3667G", "G3684A", "G3722A", "G3755A", "A3760G", "A3769G", "A3802G", "G3869A", "G3878A", "A3900G", "G3984A", "T3991C", "C4058A", "C4079T", "G4084A", "T4153A", "C4180A", "G4194A", "G4229A", "T4234G", "G4237A", "G4244A", "G4272A", "T4321C", "T4388G", "T4428C", "G4475A", "A4552G", "G4553A", "A4646G", "G4677A", "C4691T", "A4697T", "G4735A", "C4761A", "A4765G", "A4774T", "T4820G", "T4832G", "G4859A", "G4871T", "G4969A", "G5082A", "G5143A", "A5159G", "T5171C", "G5176A", "T5203C", "C5221T", "A5299G", "A5352G", "T5357G", "C5412T", "A5447G", "C5482T", "C5584T", "T5602C", "T5611A", "G5614A", "T5636C", "G5647T", "A5659G", "G5699A", "C5704G", "G5707A", "G5737A", "G5741A", "T5766C", "T5788C", "A5805G", "A5806G", "G5872A", "A5965G", "T5968C", "T5980C", "T5992C", "T6023C", "T6024A", "G6028A", "G6035A", "A6076G", "C6097T", "G6133A", "T6148C", "T6154C", "A6168C", "-6170C", "-6171G", "-6172G", "-6174A", "-6176A", "A6179G", "-6180C", "A6182C", "T6187A", "C6190-", "A6191-", "A6192-", "T6193-", "C6196-", "A6197-", "A6200C", "A6201C", "G6203T", "C6205G", "C6207G", "C6208G", "T6210A", "G6218-", "-6221T", "G6280A", "A6329G", "T6331G", "T6334C", "A6336G", "A6338G", "G6339A", "-6340G", "T6343C", "A6375C", "G6400A", "T6427C", "A6450G", "G6458C", "T6460G", "A6464G", "G6466T", "C6487T", "A6488C", "G6490T", "T6517C", "G6611A", "A6616G", "A6628G", "T6634C", "T6658C", "-6689A", "-6691A", "A6695T", "A6730G", "T6763C", "A6775G", "A6796G", "A6805G", "A6819G", "-6833A", "-6834A", "G6871A", "C6874T", "T6888C", "A6910T", "C6925T", "-6947A", "-6948A", "-6953A", "-6954A", "-6955C", "-6956T", "-6957C", "-6958A", "-6959A", "-6960A", "-6961C", "-6962A", "-6963A", "-6964T", "T7003-", "A7063G", "G7079C", "A7113G", "A7148C", "T7150A", "-7152G", "C7164G", "G7184A", "G7195A", "T7228C", "G7256A", "G7288A", "G7311A", "T7322G", "G7331A", "G7332C", "A7373C", "A7411G", "A7420G", "G7519A", "T7591C", "C7597T", "G7633C", "G7640A", "G7660T", "G7677A", "A7733C", "T7751C", "G7835A", "C7852T", "G7915A", "A8023C", "A8029C", "G8030T", "C8077T", "G8107A", "G8125A", "G8144A", "C8145T", "G8181T", "A8216G", "C8223T", "A8297G", "A8299G", "G8307A", "A8323G", "G8330A", "C8331T", "T8348G", "T8366C", "T8375C"], "INT": ["V32I", "E35K", "K42R", "G70E", "Q95K", "S124G", "G140E", "E152K", "M154I", "E157K", "R166K", "S205A", "V234I", "V260I"], "RT-p51": ["D40E", "C162S", "A200I", "E207A", "V276I", "K277R", "E302K", "F346C", "A376V", "C379S", "T386I", "E396K", "W402*", "A435T"], "RT-p66": ["D40E", "C162S", "A200I", "E207A", "V276I", "K277R", "E302K", "F346C", "A376V", "C379S", "T386I", "E396K", "W402*", "A435T", "K452I", "A466V", "Q524R", "R530K", "G543R", "D554N"], "gp120": ["W57H", "V61I", "D105A", "N159E", "N161S", "S162E", "K174T", "W182*", "K199R", "D202Q", "K204D", "K212H", "D294A", "L314M", "-328N", "M345T", "-365N", "-366S", "-367N", "-368S", "-369N", "-370N", "-371G", "R391K", "A409P", "N420S", "N432Q", "N433S", "T437S", "G444R", "M447I", "V468I"], "gp41": ["G3E", "L7V", "G10T", "I24L", "E110D", "D113K", "E119D", "S125D", "K144Q", "V178I", "L242F", "A243S", "A281I", "S293I", "N305D", "T307I", "I332V", "R335K", "A343I"], "p17": ["R30K", "R58K", "F79Y", "V82I", "A83V", "C87Y", "E106A", "N109T"], "p2": ["T8N", "N9T", "T10A", "A11-"], "p24": ["A14S", "L15I", "E79D", "E128D", "N183G", "S225G", "V230I"], "p6": ["R18K", "-26E", "K27-", "E33K", "S51L"], "p7": ["R11K"], "pro": ["I12V", "K43R", "I72T"], "rev": ["I59L", "S61L", "P77S", "E87K", "S99N", "E111D"], "tat": ["K24R", "H36Y", "P70S"], "vif": ["V31I", "K37N", "R50K", "L59I", "E60G", "K63I", "D78E", "R95S", "R128K", "V166I", "S186N"], "vpr": ["T19A", "I83V", "I84M"], "vpu": ["S2T", "D3N", "V10A", "V14L", "I18V", "L33V", "V34I", "E44K", "R45K"]}, "labels": {"aa": "INT: V32I, E35K, K42R, G70E, Q95K, S124G, G140E, E152K, M154I, E157K, R166K, S205A, V234I, V260I; RT-p51: D40E, C162S, A200I, E207A, V276I, K277R, E302K, F346C, A376V, C379S, T386I, E396K, W402*, A435T; RT-p66: D40E, C162S, A200I, E207A, V276I, K277R, E302K, F346C, A376V, C379S, T386I, E396K, W402*, A435T, K452I, A466V, Q524R, R530K, G543R, D554N; gp120: W57H, V61I, D105A, N159E, N161S, S162E, K174T, W182*, K199R, D202Q, K204D, K212H, D294A, L314M, -328N, M345T, -365N, -366S, -367N, -368S, -369N, -370N, -371G, R391K, A409P, N420S, N432Q, N433S, T437S, G444R, M447I, V468I; gp41: G3E, L7V, G10T, I24L, E110D, D113K, E119D, S125D, K144Q, V178I, L242F, A243S, A281I, S293I, N305D, T307I, I332V, R335K, A343I; p17: R30K, R58K, F79Y, V82I, A83V, C87Y, E106A, N109T; p2: T8N, N9T, T10A, A11-; p24: A14S, L15I, E79D, E128D, N183G, S225G, V230I; p6: R18K, -26E, K27-, E33K, S51L; p7: R11K; pro: I12V, K43R, I72T; rev: I59L, S61L, P77S, E87K, S99N, E111D; tat: K24R, H36Y, P70S; vif: V31I, K37N, R50K, L59I, E60G, K63I, D78E, R95S, R128K, V166I, S186N; vpr: T19A, I83V, I84M; vpu: S2T, D3N, V10A, V14L, I18V, L33V, V34I, E44K, R45K"}}}]}, {"name": "F1_NODE_0000013", "node_attrs": {"div": 0.08567, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["C417A", "C456T", "C471G", "C482A", "T495C", "C774A", "-1444C", "-1446A", "-1455G", "-1456C", "A1733-", "A1740G", "G1826T", "A2678C", "A2713G", "T3013C", "G3508A", "A4642G", "C5412T", "A5567T", "C5704T", "C5878T", "T6024G", "G6204A", "-6212A", "G6303A", "-6340C", "G6808A", "T6835-", "A7095G", "T7150G", "C8741T", "G8970A", "A8971G", "C8978-", "G9011C", "C9017A", "C9018G"], "INT": ["T218I"], "RT-p51": ["I195L"], "RT-p66": ["I195L"], "gp120": ["-109D", "-110T", "R150K", "R316Q"], "p17": ["Q28K", "L46V", "S54P"], "p24": ["L15I"], "tat": ["N64I"]}, "labels": {"aa": "INT: T218I; RT-p51: I195L; RT-p66: I195L; gp120: -109D, -110T, R150K, R316Q; p17: Q28K, L46V, S54P; p24: L15I; tat: N64I"}}, "children": [{"name": "F1_NODE_0000014", "node_attrs": {"div": 0.10221999999999999, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "C587T", "G609A", "G615A", "C645T", "G771C", "G806A", "A1034T", "C1175T", "C1211T", "G1279A", "T1299C", "G1346A", "-1457T", "C1460-", "T1483A", "A1492C", "A1498G", "A1715G", "G1732A", "A1819G", "A1834C", "A1839G", "A1843G", "A1857G", "A1907G", "A2233G", "G2273A", "A2551G", "T2579A", "A2612G", "C2694T", "A2695G", "T2770C", "C2839A", "A3080C", "G3100C", "T3139C", "G3166A", "C3194G", "G3205T", "A3218G", "T3225G", "A3264G", "A3265G", "G3307T", "A3397C", "C3399T", "T3497A", "C3600T", "C3610T", "C3665A", "T3865A", "G3952A", "G3997A", "C4129T", "G4145A", "G4150A", "C4180A", "G4267A", "A4407G", "A4697T", "G4735A", "G4862A", "G4888A", "A4936C", "A4937C", "A4958C", "A5587G", "A5613T", "T5621A", "A5622T", "C5624T", "A5626C", "G5629T", "G5631A", "C5653T", "A5687T", "G5699A", "A5958G", "G5962A", "T5980C", "T6025G", "A6050G", "A6158C", "C6165G", "-6174A", "-6175T", "-6176A", "-6178T", "-6180C", "A6192C", "-6195C", "-6198C", "G6211C", "-6213C", "-6214C", "G6267A", "T6295C", "A6330G", "A6336G", "A6456G", "T6457G", "A6465G", "T6641A", "C6642G", "-6809G", "A6818C", "T6824C", "C6849A", "T6857C", "C6858A", "-6977G", "-6978A", "-6979A", "-6980A", "-6981A", "-6982T", "-6985A", "-6986A", "G7076T", "G7132A", "-7152G", "G7160A", "T7192C", "T7322C", "A7420G", "T7591C", "T7604A", "G7640A", "C7712G", "C7843A", "G7997A", "G8008T", "T8032A", "G8125A", "G8128A", "G8130C", "A8168G", "G8245A", "C8265T", "G8488C", "A8576T", "A8746T", "C8751T", "C8906T"], "INT": ["K211R"], "RT-p51": ["V60I", "C162S", "T173A", "A200M", "D248E", "I329L", "Q367E", "E370D", "I375V", "T377R", "K390R", "E404D", "A435I"], "RT-p66": ["V60I", "C162S", "T173A", "A200M", "D248E", "I329L", "Q367E", "E370D", "I375V", "T377R", "K390R", "E404D", "A435I", "S468T", "A502V", "Q524K"], "gp120": ["N66D", "N102H", "T104S", "L106V", "-107N", "-112T", "R138K", "N161S", "N201R", "K204R", "T253A", "L314I", "S323A", "-328N", "T332K", "S335Q", "R391K", "A408S", "N414R"], "gp41": ["K46R", "S101T", "D113N", "S125N", "Q137E", "D232N", "R276T", "T289A", "A321V"], "nef": ["G49A"], "p17": ["V92I", "V94I"], "p24": ["A14P", "P92A", "A194S"], "p6": ["R18K", "Q52P"], "p7": ["F6Y", "Q9P"], "pro": ["K14R", "K20R", "N37D"], "rev": ["T10E", "R50K", "A54S", "S62T", "E94N"], "tat": ["K71E"], "vif": ["N19S", "K37N", "R50K", "G101D", "E117A"], "vpr": ["A93T"], "vpu": ["L5Y", "A6V", "I7L", "A8S", "Y27F"]}, "labels": {"aa": "INT: K211R; RT-p51: V60I, C162S, T173A, A200M, D248E, I329L, Q367E, E370D, I375V, T377R, K390R, E404D, A435I; RT-p66: V60I, C162S, T173A, A200M, D248E, I329L, Q367E, E370D, I375V, T377R, K390R, E404D, A435I, S468T, A502V, Q524K; gp120: N66D, N102H, T104S, L106V, -107N, -112T, R138K, N161S, N201R, K204R, T253A, L314I, S323A, -328N, T332K, S335Q, R391K, A408S, N414R; gp41: K46R, S101T, D113N, S125N, Q137E, D232N, R276T, T289A, A321V; nef: G49A; p17: V92I, V94I; p24: A14P, P92A, A194S; p6: R18K, Q52P; p7: F6Y, Q9P; pro: K14R, K20R, N37D; rev: T10E, R50K, A54S, S62T, E94N; tat: K71E; vif: N19S, K37N, R50K, G101D, E117A; vpr: A93T; vpu: L5Y, A6V, I7L, A8S, Y27F"}}, "children": [{"name": "AJ249238", "node_attrs": {"div": 0.12406999999999999, "accession": "AJ249238", "clade_membership": {"value": "F1"}, "country": {"value": "FR"}, "date": {"value": 1996.0}, "Strain_name": {"value": "96FR_MP411"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G395A", "G401A", "G508A", "A510C", "G519A", "T572C", "A653G", "A666G", "A758G", "G911T", "T988C", "C1006T", "G1022A", "A1115C", "A1226G", "A1263T", "C1292A", "C1294G", "C1304G", "G1311T", "T1322C", "A1418G", "A1433C", "A1452G", "A1500T", "G1503A", "G1543A", "C1598T", "G1687A", "A1691G", "A1731-", "A1732-", "G1734A", "G1736A", "T1741A", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "C1811T", "G1936A", "G2038A", "A2059G", "A2179G", "G2422A", "C2584T", "C2596T", "A2752G", "G2818A", "C2885T", "G2921A", "C2985A", "A3034G", "A3082G", "T3165C", "G3188A", "C3252G", "C3498T", "C3577T", "T3644A", "C3653A", "A3744G", "T3829C", "G3916A", "T4234C", "A4312G", "G4549A", "G4582A", "G4719C", "A4863C", "C4883T", "G4971A", "G5195A", "C5221T", "C5227A", "C5237T", "G5269A", "G5336A", "G5382A", "T5415A", "C5482T", "A5483G", "A5491G", "G5538A", "C5544A", "T5567G", "C5572A", "G5581A", "T5613C", "G5614A", "T5617C", "C5626T", "A5643T", "G5647A", "G5707T", "G5784T", "T5788C", "-5812T", "-5813C", "-5814T", "-5815T", "-5816T", "-5817T", "-5818A", "-5819T", "C5824-", "C5825-", "T5826-", "T5827-", "T5828-", "T5829-", "A5830-", "T5831-", "C5833T", "C5917T", "T5923G", "C5924T", "A5965G", "T5992C", "G6029A", "C6139T", "-6170G", "-6171T", "-6172C", "-6177T", "T6178C", "C6183G", "C6184T", "C6202T", "T6210G", "-6215C", "-6216C", "-6217G", "-6221T", "A6282G", "C6287A", "G6314A", "T6328C", "T6331C", "A6461C", "A6462C", "A6525G", "A6565G", "-6689A", "-6691A", "A6695T", "G6750A", "C6758T", "A6764G", "C6766A", "G6771A", "A6786G", "T6795A", "G6797A", "A6798C", "G6801A", "A6806C", "G6807A", "A6819G", "A6913G", "T6916C", "A6926G", "A6981G", "-6983G", "-6984A", "-6987A", "-6988G", "-6989T", "-6990A", "-6991C", "-6992A", "-6993A", "-6994T", "T7003-", "C7014T", "A7094C", "C7101A", "A7113C", "A7148C", "C7171T", "G7182A", "G7212A", "G7269A", "A7275G", "A7281G", "A7289C", "A7299G", "G7331A", "G7333A", "C7356A", "T7357C", "G7360A", "T7403C", "G7513T", "G7519A", "C7597T", "G7627T", "G7630T", "G7658C", "G7677A", "G7765A", "A7782G", "T7844A", "A7846G", "A8029G", "G8030T", "A8032G", "G8107A", "A8117G", "G8144A", "G8158A", "T8164C", "G8170A", "A8297G", "A8308G", "G8330A", "C8331G", "C8351T", "C8406A", "A8459G", "G8462A", "A8469G", "G8531T", "A8584T", "G8666A", "A8701T", "A8726C", "C8756T", "G8795T", "G8822A", "C8843A", "A8887G", "G8888A", "A8892G", "C8903T", "G8942T", "C8951T", "G8955A", "C8960A", "C8966-", "A8967-", "G8968-", "A8969-", "A8970-", "G8971-", "A8972-", "T8973-", "T8974-", "C8975-", "T8976-", "A8977-", "A8979-", "A8980-", "G8981-", "G8982-", "G8983-", "A8984-", "C8985-", "T8986-", "T8987-", "T8988-", "C8989-", "C8990-", "G8991-", "C8992-", "T8993-", "G8994-", "G8995-", "G8996-", "G8997-", "A8998-", "C8999-", "T9000-", "T9001-", "T9002-", "C9003-", "C9004-", "A9005-", "G9006-", "A9007-", "G9008-", "G9010-", "C9011-", "G9012-", "G9013-", "C9016-", "A9017-", "G9018-", "A9019-", "G9020-", "G9021-", "G9022-", "G9024A", "G9030C", "G9031A", "G9035T", "G9038C", "C9039T", "T9040G", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "T9058C", "T9060G"], "RT-p51": ["V276I", "A297E", "M357T", "V365I", "T386S"], "RT-p66": ["V276I", "A297E", "M357T", "V365I", "T386S", "T468I", "L517I", "Q520K", "K550R"], "gp120": ["K35R", "E59K", "-111S", "-113P", "-114E", "-115E", "-116S", "-117G", "-118A", "G124-", "A125-", "K143R", "H145N", "V154I", "N159S", "K203P", "K224R", "R299K", "H302Y", "N304E", "S306N", "N311S", "I314K", "E315T", "R318Q", "-319E", "N358D", "-365S", "-366E", "-367K", "-368Y", "-369N", "-370G", "-371T", "T385-", "T387I", "T416N", "N420T", "N432Q", "N433S", "-436R", "G443E", "S453N", "R472K", "K474R", "Q476R", "K479Q", "K482R"], "gp41": ["G10R", "T18N", "M19I", "Q108H", "E119Q", "N160S", "L181M", "A243S", "N272D", "A281T", "I332V", "A343S"], "nef": ["I43V", "E63D", "Y81F", "Y120F", "Y135F", "E151D", "K182R", "K184E", "D205N", "C206*"], "p17": ["K18R", "R58K", "K59Q", "G62R", "S111G"], "p2": ["T10A"], "p24": ["V86A", "A92L", "E128D", "T178S", "D187E", "T188S", "S225G"], "p6": ["S3N", "N47S"], "p7": ["I12F", "V13I", "R26K"], "pro": ["L5F", "M46I"], "rev": ["S8N", "K14R", "Y18A", "S61V", "T62A", "E87K", "E90G", "S99N", "V104M", "S106P", "H107R", "A108T"], "tat": ["H13Q", "H36C", "T39A", "I64S", "Q66K", "V69I"], "vif": ["E45Q"], "vpr": ["V31I", "H45Y"], "vpu": ["D3N", "L12F", "V14I", "V34L", "P73S", "P76S"]}, "labels": {"aa": "RT-p51: V276I, A297E, M357T, V365I, T386S; RT-p66: V276I, A297E, M357T, V365I, T386S, T468I, L517I, Q520K, K550R; gp120: K35R, E59K, -111S, -113P, -114E, -115E, -116S, -117G, -118A, G124-, A125-, K143R, H145N, V154I, N159S, K203P, K224R, R299K, H302Y, N304E, S306N, N311S, I314K, E315T, R318Q, -319E, N358D, -365S, -366E, -367K, -368Y, -369N, -370G, -371T, T385-, T387I, T416N, N420T, N432Q, N433S, -436R, G443E, S453N, R472K, K474R, Q476R, K479Q, K482R; gp41: G10R, T18N, M19I, Q108H, E119Q, N160S, L181M, A243S, N272D, A281T, I332V, A343S; nef: I43V, E63D, Y81F, Y120F, Y135F, E151D, K182R, K184E, D205N, C206*; p17: K18R, R58K, K59Q, G62R, S111G; p2: T10A; p24: V86A, A92L, E128D, T178S, D187E, T188S, S225G; p6: S3N, N47S; p7: I12F, V13I, R26K; pro: L5F, M46I; rev: S8N, K14R, Y18A, S61V, T62A, E87K, E90G, S99N, V104M, S106P, H107R, A108T; tat: H13Q, H36C, T39A, I64S, Q66K, V69I; vif: E45Q; vpr: V31I, H45Y; vpu: D3N, L12F, V14I, V34L, P73S, P76S"}}}, {"name": "F1_NODE_0000015", "node_attrs": {"div": 0.11002999999999999, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G365C", "G520C", "G677A", "A678G", "G989A", "T1001C", "C1005G", "G1404A", "G1443A", "G1709A", "G1773A", "C1853A", "G2131A", "G2407A", "G2530A", "A2557G", "C2613T", "A2627C", "C2644T", "A2716T", "A2755G", "G2926A", "A3164G", "A3449C", "G3523A", "A3539G", "A3770G", "A4427T", "T4776A", "A4804T", "C4827T", "A4850G", "G4865A", "C4902T", "A5159G", "T5403G", "C5568A", "T5616A", "G5623A", "C5663T", "A6130G", "T6279C", "C6562T", "A6616G", "A6693G", "C6925T", "-6970G", "-6971A", "-6972G", "-6975G", "-6983T", "-6984C", "G7005A", "G7162T", "C7164G", "A7290C", "A7402G", "C7429T", "A7689G", "C7792T", "A8029C", "C8038G", "C8048T", "A8263G", "A8273G", "C8277T", "G8288A", "T8375G", "G8388A", "A8537G", "A8739G", "-8978A", "-9009G", "-9014T", "-9015C"], "INT": ["I218L"], "RT-p51": ["A173V", "I178L", "E207D", "M357V"], "RT-p66": ["A173V", "I178L", "E207D", "M357V", "K452Q", "I482V", "I559V"], "gp120": ["-114A", "-115S", "-122E", "L142S", "-384D", "T437S", "K479T"], "gp41": ["D109E", "N129S", "L242F", "A325V", "V329I"], "nef": ["V16I"], "p17": ["G62A"], "p2": ["A7T"], "p6": ["D32N"], "pro": ["L19I"], "rev": ["S61R", "L64V", "P67L"], "tat": ["D9E", "N12K"], "vif": ["L64I", "H73L", "I129V"], "vpr": ["T19A"], "vpu": ["V6I", "A19V"]}, "labels": {"aa": "INT: I218L; RT-p51: A173V, I178L, E207D, M357V; RT-p66: A173V, I178L, E207D, M357V, K452Q, I482V, I559V; gp120: -114A, -115S, -122E, L142S, -384D, T437S, K479T; gp41: D109E, N129S, L242F, A325V, V329I; nef: V16I; p17: G62A; p2: A7T; p6: D32N; pro: L19I; rev: S61R, L64V, P67L; tat: D9E, N12K; vif: L64I, H73L, I129V; vpr: T19A; vpu: V6I, A19V"}}, "children": [{"name": "MN485989", "node_attrs": {"div": 0.14856, "accession": "MN485989", "clade_membership": {"value": "F1"}, "country": {"value": "BE"}, "date": {"value": 2016.0}, "Strain_name": {"value": "AS"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T341G", "T372G", "T373G", "G388A", "T391C", "A399C", "G424A", "T427C", "G431T", "A433G", "A437G", "G455A", "G562A", "A576G", "G595A", "A604G", "G608A", "A666G", "A730T", "A810G", "G869A", "T885C", "C890T", "A920G", "A965T", "G1016A", "T1064G", "G1067A", "G1090A", "A1176G", "C1178T", "A1263T", "T1280C", "C1292A", "A1293T", "G1301T", "C1304T", "T1325C", "A1339G", "T1385C", "A1418G", "T1421C", "T1517C", "A1529G", "A1565G", "A1588G", "A1589G", "A1601G", "A1691G", "C1724T", "-1733G", "T1741C", "G1757A", "G1819A", "A1828C", "A1832C", "T1909G", "C1986T", "T2011C", "T2129C", "A2176G", "A2224G", "C2296T", "A2320G", "A2350G", "T2383C", "G2422A", "G2461A", "G2464A", "G2469C", "C2488T", "A2491C", "C2500T", "C2575T", "T2597C", "C2605T", "T2632G", "C2678A", "G2692A", "G2695A", "G2705A", "T2719C", "A2752G", "A2794G", "A2809G", "A2938G", "G2947A", "A2971T", "G2984A", "T3045C", "A3058C", "A3064G", "C3067A", "T3068A", "T3118C", "G3154A", "G3168A", "G3218A", "T3310C", "C3397T", "A3409G", "C3475T", "G3477A", "C3492T", "A3508G", "C3653A", "A3655T", "A3703G", "A3736G", "T3757C", "A3769G", "A3772G", "A3808C", "A3825C", "T3889C", "T3898C", "C3908T", "G3919A", "T3970C", "C3995A", "A4063C", "G4084A", "T4110G", "T4144C", "C4181G", "G4183T", "G4335A", "A4336G", "C4381T", "G4549A", "G4573A", "A4577C", "G4581A", "G4583C", "T4606C", "G4673A", "T4697G", "T4702C", "G4767A", "A4773G", "A4790G", "G4802A", "A4869G", "C4937T", "C4965T", "A4986G", "C4988A", "A4990T", "T5029G", "C5084T", "G5121A", "G5128A", "A5186C", "A5200G", "C5221T", "C5242T", "G5257A", "G5269A", "C5303T", "G5336A", "A5345G", "T5357A", "C5383G", "A5385G", "T5398C", "T5412G", "T5415C", "A5431T", "A5483G", "G5538A", "A5548G", "A5560G", "A5564C", "G5565A", "A5566G", "A5568G", "C5579T", "G5581A", "T5611C", "T5622C", "T5704G", "G5706A", "G5747T", "C5763T", "G5781C", "A5787T", "T5788G", "T5789C", "G5790A", "C5792A", "A5793G", "C5795A", "G5801C", "G5802A", "A5804C", "A5806C", "G5808T", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5861A", "C5862A", "C5866T", "C5869T", "C5916A", "G5958A", "A6037G", "C6115T", "G6133A", "G6165T", "A6168C", "T6169C", "A6174C", "-6177A", "A6179G", "T6181C", "C6184T", "C6195G", "C6196T", "A6197G", "A6201G", "C6202T", "C6207A", "T6210G", "-6215C", "-6216T", "-6217G", "-6221A", "C6222A", "A6275C", "C6278T", "A6286G", "T6307G", "C6318A", "G6330A", "T6331A", "G6333A", "C6347T", "T6361C", "C6364A", "A6430T", "G6442A", "A6524C", "A6525G", "G6547A", "C6593G", "G6605A", "C6612T", "A6686-", "G6687-", "T6688-", "T6690-", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701T", "-6702T", "G6716A", "T6793C", "A6806-", "G6807A", "G6809A", "A6810G", "A6811C", "G6814A", "T6815G", "A6817T", "C6818A", "G6820A", "C6822G", "T6823A", "C6824G", "-6835T", "A6854G", "C6856A", "T6860C", "C6861A", "G6935A", "G6936A", "A6937T", "-6973A", "-6974C", "-6976A", "A6979G", "A6980G", "G7054A", "A7060G", "C7096G", "C7101A", "A7107G", "A7120G", "T7147G", "G7152A", "T7153C", "A7154G", "T7156G", "T7159C", "A7160T", "G7161T", "T7162C", "T7165C", "A7190G", "A7197G", "A7279G", "G7291A", "C7305T", "A7306G", "T7308G", "G7309A", "G7311T", "C7322A", "T7400C", "G7420A", "T7567G", "A7590G", "T7609C", "A7641G", "C7805T", "T7876G", "G7883A", "A7996C", "A8163G", "G8168A", "A8196G", "G8264A", "G8274T", "C8286G", "G8304C", "A8308G", "G8329A", "T8387A", "G8398A", "G8402A", "G8408A", "A8459G", "T8501C", "G8507A", "T8511A", "G8531C", "C8543A", "A8564G", "G8595T", "A8655G", "C8676A", "C8687T", "C8690T", "A8701T", "T8746A", "T8757A", "T8759G", "C8771T", "T8786A", "G8787A", "A8788G", "A8812C", "G8822A", "A8827C", "T8864G", "A8869C", "G8885A", "C8904A", "G8905C", "T8923G", "G8929A", "A8934C", "A8935T", "A8980C", "G8991A", "T8993C", "G9035A", "T9036G", "C9093T", "T9097C", "T9108C", "C9129-", "T9130-", "A9131-", "G9132-", "C9133-", "T9134-", "A9135-", "G9136-", "G9137-", "G9138-", "A9139-"], "INT": ["E11D", "N17T", "L74I", "E96D", "I112R", "Q136D", "R187K", "I268L", "R269K", "D270H"], "RT-p51": ["R125T", "L195I", "M200I", "E204K", "A297T", "V317A", "D324E", "L325I", "R358K", "V375I"], "RT-p66": ["R125T", "L195I", "M200I", "E204K", "A297T", "V317A", "D324E", "L325I", "R358K", "V375I", "R461K", "A466V", "Q520N"], "gp120": ["A3K", "T21N", "S104I", "D105A", "V106T", "N108A", "D109T", "T110N", "-111A", "-113S", "-116D", "-117N", "-118S", "-119T", "-120L", "-121E", "-123K", "K141Q", "P155Q", "S160N", "K224R", "Q247E", "D251N", "A253V", "S278G", "A288T", "Q316R", "R318-", "N334E", "S336H", "G361N", "T416N", "N418S", "N432K", "N434E", "N446D", "K448R"], "gp41": ["A1V", "V2G", "G3V", "L7M", "N96S", "N113S", "N125S", "V194I", "R231S", "N287S", "A289T", "N298S", "V321I", "R324V", "A328G", "R334T"], "nef": ["R19K", "M20I", "W57R", "E63D", "V85L", "K105E", "L112M", "Y120F", "I133V", "F139M", "D149S", "N157T", "N162T", "D174E", "E176A", "R188T", "I194R", "R196K", "K198L"], "p17": ["L13G", "I19T", "R30K", "M31T", "K32N", "H33R", "R76K", "T81A", "C87Y", "Q90R", "S111G", "T115A", "Y132F"], "p24": ["I27V", "S120N", "S149G", "T178S", "D187E", "T188S", "S194A", "K203R"], "p6": ["I21A", "*50S"], "p7": ["K41R"], "pro": ["L10F", "T12P", "D37E", "T63I"], "rev": ["S8N", "E10A", "K14R", "R17Q", "Y18C", "K50Q"], "tat": ["L3V", "T19S", "H36R", "T58A", "S62G", "Q63P", "I64V", "P68L", "V69I"], "vif": ["V7A", "M29I", "N37K", "F39S", "E61K", "K63E", "R95G", "H127Y", "N134E", "Y135F", "L148W", "E179K", "R181K"], "vpr": ["G6E", "N28H", "T93G", "S94G"], "vpu": ["S2P", "D3E", "L33V", "R47I", "E58D"]}, "labels": {"aa": "INT: E11D, N17T, L74I, E96D, I112R, Q136D, R187K, I268L, R269K, D270H; RT-p51: R125T, L195I, M200I, E204K, A297T, V317A, D324E, L325I, R358K, V375I; RT-p66: R125T, L195I, M200I, E204K, A297T, V317A, D324E, L325I, R358K, V375I, R461K, A466V, Q520N; gp120: A3K, T21N, S104I, D105A, V106T, N108A, D109T, T110N, -111A, -113S, -116D, -117N, -118S, -119T, -120L, -121E, -123K, K141Q, P155Q, S160N, K224R, Q247E, D251N, A253V, S278G, A288T, Q316R, R318-, N334E, S336H, G361N, T416N, N418S, N432K, N434E, N446D, K448R; gp41: A1V, V2G, G3V, L7M, N96S, N113S, N125S, V194I, R231S, N287S, A289T, N298S, V321I, R324V, A328G, R334T; nef: R19K, M20I, W57R, E63D, V85L, K105E, L112M, Y120F, I133V, F139M, D149S, N157T, N162T, D174E, E176A, R188T, I194R, R196K, K198L; p17: L13G, I19T, R30K, M31T, K32N, H33R, R76K, T81A, C87Y, Q90R, S111G, T115A, Y132F; p24: I27V, S120N, S149G, T178S, D187E, T188S, S194A, K203R; p6: I21A, *50S; p7: K41R; pro: L10F, T12P, D37E, T63I; rev: S8N, E10A, K14R, R17Q, Y18C, K50Q; tat: L3V, T19S, H36R, T58A, S62G, Q63P, I64V, P68L, V69I; vif: V7A, M29I, N37K, F39S, E61K, K63E, R95G, H127Y, N134E, Y135F, L148W, E179K, R181K; vpr: G6E, N28H, T93G, S94G; vpu: S2P, D3E, L33V, R47I, E58D"}}}, {"name": "MT417762", "node_attrs": {"div": 0.14501999999999998, "accession": "MT417762", "clade_membership": {"value": "F1"}, "country": {"value": "BE"}, "date": {"value": 2019.0}, "Strain_name": {"value": "DZ"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["-305T", "T372C", "G395A", "G407A", "T473C", "G474A", "G481A", "C540T", "A541C", "G542A", "A607G", "G614T", "T645G", "A665G", "C679T", "G696A", "A700C", "C719T", "G809A", "G837A", "T852A", "A965C", "A968C", "G1031A", "A1079G", "T1100G", "A1115T", "A1161C", "C1169T", "T1182C", "G1192A", "G1205A", "A1208G", "T1214C", "G1216A", "A1259G", "A1271T", "G1311T", "G1419A", "A1473-", "A1474-", "A1475-", "A1476-", "G1477-", "T1478-", "T1482A", "A1483G", "T1502G", "G1527C", "A1595G", "G1617T", "A1618T", "A1619G", "A1657G", "C1670A", "A1673G", "-1733A", "G1740A", "C1755T", "G1760A", "G1766A", "A1774G", "C1796T", "A1828G", "C1831T", "A1832G", "C1833A", "C1834T", "G1846A", "A1849G", "C1865T", "A1982G", "A1985G", "A2002T", "G2008A", "T2017A", "A2018T", "T2080G", "A2210G", "A2227G", "C2281T", "A2341G", "T2353C", "T2458C", "C2467T", "C2476T", "G2509A", "A2512G", "C2527T", "T2542G", "T2581C", "C2626G", "C2635T", "T2653C", "T2708C", "G2713A", "C2723T", "C2834A", "C2845A", "T2873A", "C2942A", "C3175T", "A3192G", "A3247G", "C3319T", "A3334G", "A3400G", "A3443T", "G3494A", "G3595A", "A3611C", "A3630G", "T3644A", "A3682G", "A3724C", "G3755A", "C3773T", "G3787A", "A3814G", "G3834A", "T3844C", "C3857A", "G3859A", "C3863G", "C3922T", "C3994A", "C4006A", "T4135C", "G4475A", "G4550A", "C4576T", "C4674T", "G4677A", "A4766T", "G4870A", "G4871A", "T4925A", "G4969A", "G5060A", "G5094A", "T5095C", "A5161G", "C5168A", "T5206C", "C5237T", "C5242A", "T5263C", "T5356C", "G5382A", "T5412A", "C5425A", "T5490C", "G5496A", "C5544A", "G5556A", "C5563A", "T5602G", "T5611A", "C5612A", "G5614A", "A5628G", "A5631T", "A5655C", "A5680T", "G5707T", "G5784A", "T5831A", "A5842G", "T5847C", "C5851A", "G5853A", "G5858A", "C5917T", "A5947G", "G5949C", "T5964C", "C6010T", "G6016A", "T6023G", "G6028A", "C6110G", "C6139T", "C6158A", "-6170G", "-6171C", "-6172C", "T6175G", "-6177G", "C6180A", "A6186C", "G6188A", "C6192A", "A6194G", "C6198G", "G6203C", "A6204T", "C6205T", "A6209C", "C6211T", "A6212G", "C6213A", "C6214A", "G6220A", "-6221C", "G6226A", "T6252C", "G6263A", "C6271T", "C6278G", "T6301C", "A6324G", "A6338G", "G6339A", "T6343C", "A6394G", "T6397C", "A6622C", "-6689A", "-6691A", "C6721T", "G6743A", "G6774C", "C6777A", "C6779A", "A6781T", "A6799G", "G6801A", "G6802A", "A6808G", "A6810C", "A6848G", "C6856T", "T6860A", "C6861G", "G6871A", "A6944-", "A6945-", "T6946-", "-6953T", "-6954T", "-6955G", "-6956T", "-6957T", "-6958T", "-6959A", "-6960A", "-6961T", "-6968G", "-6969A", "-6973T", "-6974A", "-6976T", "A6978T", "T6982C", "A6985G", "A6986T", "-6987C", "-6988C", "-6989A", "-6990A", "C7008T", "A7129G", "C7134T", "A7135G", "G7150T", "A7155C", "A7177G", "T7222C", "G7256A", "T7403C", "A7439C", "G7440A", "T7462C", "G7508A", "G7552A", "A7553C", "A7570G", "C7625T", "G7627T", "G7630A", "A7632G", "C7642T", "C7651T", "G7660A", "A7669G", "G7677A", "T7681C", "A7722T", "C7723T", "A7732G", "G7735A", "T7801C", "A7858G", "G7868A", "T7930C", "A7931C", "C7940T", "A8002C", "G8006A", "T8155C", "T8164C", "C8167T", "T8205C", "A8233G", "G8264T", "G8269A", "G8276A", "T8278C", "T8302C", "A8323G", "A8364G", "G8373A", "T8374G", "A8409G", "T8498C", "C8514G", "T8582C", "A8643G", "G8666A", "T8740A", "T8741A", "T8789G", "A8806G", "A8882G", "C8903T", "T8906G", "C8921T", "A8922G", "T8947A", "C8952A", "A8954C", "G8955T", "A8956G", "C8960G", "T8973A", "C8992A", "A9019T", "C9039T"], "INT": ["R20K", "L28I", "P30A", "V234I", "V259I"], "RT-p51": ["T39A", "D177E", "P247T", "D250E", "L260I", "L283I", "K366R", "I435M"], "RT-p66": ["T39A", "D177E", "P247T", "D250E", "L260I", "L283I", "K366R", "I435M", "T450S", "V467I", "I506L", "K512R", "L517I", "A554T"], "gp120": ["A2T", "G32A", "K35R", "V37A", "W57G", "Q86E", "H102N", "V106A", "N107K", "N108S", "D109N", "-111T", "-113N", "-116N", "-117L", "-118T", "-119L", "-120E", "-123P", "M133T", "V137I", "S142A", "N157S", "N158G", "H280R", "L281I", "D297N", "G307A", "Q309N", "-319A", "R322Q", "K332E", "-365S", "-366S", "-367N", "T385I", "R414S", "T427M", "N434G", "-436S", "V468I"], "gp41": ["R46Q", "V69I", "I84L", "Q108Y", "E110G", "N140I", "A189T", "I210L", "P213S", "R233S", "V235I", "I301T", "V321F", "R324G", "V325I"], "nef": ["S8G", "V11R", "T23A", "L58V", "I101V", "I133E", "Y135F", "D149E", "K155R", "I194V", "F202Y", "Q204N", "D205C", "C206W"], "p17": ["K18R", "D47N", "G49E", "Q69S", "K91R", "E93D", "L104V", "T115V", "D121N", "K122T"], "p24": ["V36I", "S41T", "E79D", "E128D", "M144L", "R154K", "R162K", "E180D", "V230I"], "p6": ["P23-", "S24P", "P25S", "-26S", "N32S", "N47S", "*50W", "S51L", "P52I"], "p7": ["K3-", "S4-", "Y6S", "I12M", "E21Q", "E51L", "R52K"], "pro": ["T12D", "I62V", "T63A", "T74S"], "rev": ["Y28P", "P31L", "I52L", "R53H", "S103P", "S106P", "H107C"], "tat": ["Q17K", "Q63K", "L74S"], "vif": ["H30Y", "V31I", "E60D", "R95K", "D113E", "R128K", "V170T", "H192R"], "vpr": ["L22I", "H45Y", "I84T"], "vpu": ["S2N", "D3K", "L16F", "I25L", "V34L", "I75N", "I79V", "L82I"]}, "labels": {"aa": "INT: R20K, L28I, P30A, V234I, V259I; RT-p51: T39A, D177E, P247T, D250E, L260I, L283I, K366R, I435M; RT-p66: T39A, D177E, P247T, D250E, L260I, L283I, K366R, I435M, T450S, V467I, I506L, K512R, L517I, A554T; gp120: A2T, G32A, K35R, V37A, W57G, Q86E, H102N, V106A, N107K, N108S, D109N, -111T, -113N, -116N, -117L, -118T, -119L, -120E, -123P, M133T, V137I, S142A, N157S, N158G, H280R, L281I, D297N, G307A, Q309N, -319A, R322Q, K332E, -365S, -366S, -367N, T385I, R414S, T427M, N434G, -436S, V468I; gp41: R46Q, V69I, I84L, Q108Y, E110G, N140I, A189T, I210L, P213S, R233S, V235I, I301T, V321F, R324G, V325I; nef: S8G, V11R, T23A, L58V, I101V, I133E, Y135F, D149E, K155R, I194V, F202Y, Q204N, D205C, C206W; p17: K18R, D47N, G49E, Q69S, K91R, E93D, L104V, T115V, D121N, K122T; p24: V36I, S41T, E79D, E128D, M144L, R154K, R162K, E180D, V230I; p6: P23-, S24P, P25S, -26S, N32S, N47S, *50W, S51L, P52I; p7: K3-, S4-, Y6S, I12M, E21Q, E51L, R52K; pro: T12D, I62V, T63A, T74S; rev: Y28P, P31L, I52L, R53H, S103P, S106P, H107C; tat: Q17K, Q63K, L74S; vif: H30Y, V31I, E60D, R95K, D113E, R128K, V170T, H192R; vpr: L22I, H45Y, I84T; vpu: S2N, D3K, L16F, I25L, V34L, I75N, I79V, L82I"}}}]}]}, {"name": "F1_NODE_0000016", "node_attrs": {"div": 0.10166, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G121T", "A334-", "G404A", "A527T", "T571A", "G579A", "A607G", "C851T", "C1229T", "A1278G", "A1433T", "A1450G", "A1493G", "G1543A", "T1574C", "A1601G", "A1656C", "G1687A", "C1724T", "G1734-", "A1735-", "C1745A", "A1927G", "T2013C", "G2131A", "C2195T", "A2210G", "A2311G", "A2350G", "C2420T", "G2470A", "A2616G", "A2693G", "A2715C", "T2803A", "G2837A", "T2873C", "G2926A", "C3128A", "G3211A", "T3349C", "A3449C", "G3686A", "G3834A", "A4102T", "T4110G", "G4186A", "G4353A", "G4677A", "T4702C", "A4737G", "T4820G", "G4871C", "A4937T", "C4965T", "G5069A", "A5119G", "C5125T", "A5278G", "C5306T", "T5384C", "C5444A", "T5451C", "G5463A", "G5543A", "G5614C", "T5617G", "G5619A", "A5787T", "T5788G", "T5789C", "G5801C", "A5804C", "A5806C", "C5884T", "A5914G", "T6101C", "T6155C", "C6160T", "-6195G", "-6213A", "-6214G", "-6215G", "-6216A", "-6217A", "G6220C", "-6221A", "G6280A", "G6333A", "A6353C", "G6532A", "G6550A", "A6682G", "-6689A", "-6691A", "A6767G", "A6794G", "G6797C", "A6810G", "A6811C", "G6814A", "T6815G", "A6817T", "G6820A", "C6822T", "T6823C", "T6826A", "-6830C", "-6831C", "A6836-", "-6988T", "-6989A", "-6990A", "-6991C", "-7000C", "-7001A", "-7002A", "A7026G", "A7036G", "C7124T", "A7151-", "G7256A", "T7308C", "G7319C", "C7320T", "G7440A", "T7624C", "G7660A", "A7706C", "G7720A", "G7735A", "A7756C", "A7921G", "A8051C", "G8131A", "A8132G", "C8223T", "A8311C", "A8370C", "T8374C", "A8378G", "A8399G", "G8402A", "A8446G", "C8460A", "T8568C", "A8652C", "C8810T", "C8825T", "T8864A", "A8922G", "-9009G", "-9014T", "-9015C", "G9030A"], "INT": ["R20K", "I112R", "G193D"], "RT-p51": ["T39A", "K174R", "D248N", "P345T"], "RT-p66": ["T39A", "K174R", "D248N", "P294T", "P345T", "K452Q", "V531I"], "gp120": ["-107K", "N108E", "R138N", "I156L", "S160N", "I305V", "L314V", "E315-", "V317R", "R318-", "-379N", "N414S", "N432Q", "N433-", "V468I"], "gp41": ["V2A", "A6L", "E110Q", "I135L", "G215E", "R277G", "T307I"], "nef": ["V11-", "M20I", "Q35R", "A83G", "K104Q", "D174E", "I194V"], "p1": ["N9H"], "p17": ["F79Y", "V82I", "K91R"], "p24": ["N183G"], "p6": ["S3N"], "p7": ["R26K"], "pro": ["I72T"], "rev": ["E68A", "T93A", "E95R"], "tat": ["L3P", "T23N", "R56H", "D80N"], "vif": ["V31I", "F39S", "I51V", "D78E", "R95S", "E117D", "H127Y", "I129V", "Q178R", "T180I"], "vpu": ["D3H", "L4V", "K31R"]}, "labels": {"aa": "INT: R20K, I112R, G193D; RT-p51: T39A, K174R, D248N, P345T; RT-p66: T39A, K174R, D248N, P294T, P345T, K452Q, V531I; gp120: -107K, N108E, R138N, I156L, S160N, I305V, L314V, E315-, V317R, R318-, -379N, N414S, N432Q, N433-, V468I; gp41: V2A, A6L, E110Q, I135L, G215E, R277G, T307I; nef: V11-, M20I, Q35R, A83G, K104Q, D174E, I194V; p1: N9H; p17: F79Y, V82I, K91R; p24: N183G; p6: S3N; p7: R26K; pro: I72T; rev: E68A, T93A, E95R; tat: L3P, T23N, R56H, D80N; vif: V31I, F39S, I51V, D78E, R95S, E117D, H127Y, I129V, Q178R, T180I; vpu: D3H, L4V, K31R"}}, "children": [{"name": "AB485658", "node_attrs": {"div": 0.12284, "accession": "AB485658", "clade_membership": {"value": "F1"}, "country": {"value": "RO"}, "date": {"value": 1996.0}, "Strain_name": {"value": "BCI_R07"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G474A", "A660C", "A661G", "G703T", "A785G", "C890T", "A1093C", "A1125G", "T1280A", "A1308C", "A1343T", "G1404A", "G1419A", "G1443A", "A1452G", "G1487A", "A1496G", "G1503A", "T1676C", "C1706T", "A1712C", "-1733G", "G1736-", "T1741A", "-1746A", "-1747C", "-1748T", "C1782A", "A1832T", "C1853T", "A2029G", "T2129C", "A2182G", "T2215C", "T2257C", "A2293G", "C2476T", "G2580A", "T2581C", "A2629C", "G2630A", "C2635T", "A2698G", "G2714A", "A2716C", "A2803G", "C2952T", "C2968T", "C2975A", "C2978T", "G3019A", "C3067T", "A3115G", "T3225C", "C3322T", "T3345C", "A3398G", "A3592G", "G3595A", "G3679A", "T3746C", "G3920A", "A3989G", "T3991C", "G4354T", "C4357T", "G4590T", "G4642A", "A4964G", "T5197C", "G5199A", "T5356C", "A5364G", "G5365C", "A5447G", "G5507A", "G5556A", "A5564C", "G5565A", "C5568A", "G5668A", "T5684C", "A5733G", "T5772C", "G5775A", "G5784T", "G5790A", "C5792A", "C5795A", "T5799G", "G5802A", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5861A", "C5866T", "C5869A", "A5908G", "A5935C", "C6010T", "T6023G", "G6024A", "C6026T", "A6030T", "C6110G", "T6163-", "A6164-", "C6165-", "T6166-", "G6167-", "A6168-", "T6169-", "A6173-", "A6179-", "C6184T", "A6194G", "-6198C", "A6209C", "T6241C", "G6253A", "A6266G", "A6282G", "T6285C", "T6289G", "A6320C", "A6324G", "T6325C", "A6330C", "A6336C", "C6340T", "T6457G", "A6464G", "G6572A", "G6611A", "A6628G", "T6655C", "A6684G", "C6692T", "A6695T", "A6715C", "T6722C", "G6725A", "T6733G", "G6754A", "A6765T", "G6771A", "A6789C", "A6790C", "A6806-", "G6807C", "-6809A", "T6822G", "-6832A", "-6833G", "-6834G", "-6835G", "A6837-", "T6857C", "T6938C", "-6947A", "-6948G", "-6949T", "-6950A", "-6951G", "-6952C", "-6953A", "-6954C", "-6955G", "-6971A", "-6972G", "-6973C", "-6974C", "-6975C", "-6976C", "-6977G", "-6978A", "-6979A", "-6980G", "-6981G", "-6982A", "-6983G", "-6984T", "-6985G", "-6986T", "-6987T", "-6992A", "-6993C", "-6994G", "-6995A", "-6996G", "-6997C", "-6998C", "-6999A", "T7003A", "C7006A", "C7008A", "C7020T", "A7063C", "A7148C", "T7153-", "G7161A", "A7274C", "A7301C", "A7313T", "T7325C", "A7366G", "A7504C", "G7630T", "G7631C", "A7666C", "C7692T", "G7701A", "G7702C", "A7722T", "T7774C", "A7782C", "T7796A", "T7801G", "A7818G", "A7846G", "G7947A", "G7987A", "A7998G", "C8009A", "G8269A", "A8273G", "C8277T", "T8278G", "G8279C", "G8280T", "G8283C", "G8288A", "G8427A", "C8514G", "T8567G", "T8569C", "A8570G", "C8590G", "G8595C", "A8617G", "A8662G", "C8688A", "T8740C", "A8750G", "G8761A", "G8834A", "A8892C", "G8917A", "C8921T", "T8923A", "A8935G", "C8966T", "G9026A", "C9078T"], "INT": ["A49T", "I72V", "S124G", "G272V"], "RT-p51": ["C162Y", "V179I", "E207T", "A286V", "P294T", "V417A"], "RT-p66": ["C162Y", "V179I", "E207T", "A286V", "V417A"], "gp120": ["A3T", "N5K", "W57D", "E59V", "Q86E", "D105N", "M133I", "N138G", "K143R", "V144A", "H145Q", "N157S", "N159T", "N161G", "S162P", "Y163L", "R164N", "L165N", "I166T", "N167S", "N201K", "K204E", "E240K", "K277R", "H280Y", "Q287H", "Y290H", "A291T", "G293D", "D294R", "N304I", "S306N", "K312T", "S335P", "-365S", "-366S", "-367T", "-373S", "-374P", "-375E", "-376G", "-377V", "-378F", "-380T", "-381S", "-382H", "-383K", "-384G", "T385N", "P389L", "-436E", "K474Q"], "gp41": ["I4L", "F8L", "E121D", "T130I", "R133N", "N140I", "N160T", "S165T", "N166K", "K172R", "D232G", "R324G", "A325V", "G326L", "R327T", "V329I"], "nef": ["I10L", "-11A", "G29R", "L58V", "E64D", "L76P", "V85L", "K92R", "Q107R", "H116N", "I133T", "G140E", "K184Q", "R192K", "V194E", "K198R"], "p17": ["D47N", "N109R", "G123V"], "p2": ["A7T", "N9-", "T10S", "-12A"], "p24": ["N121T", "R132G", "N193H", "V230I"], "p6": ["I21T", "L35M"], "p7": ["R11K", "V13I"], "pro": ["T12S"], "rev": ["R17Q", "A47T", "A54E"], "tat": ["K24R", "G44D", "Q63P"], "vif": ["E2*"], "vpr": ["R32K", "I84T", "R87A"], "vpu": ["V21I", "V26A"]}, "labels": {"aa": "INT: A49T, I72V, S124G, G272V; RT-p51: C162Y, V179I, E207T, A286V, P294T, V417A; RT-p66: C162Y, V179I, E207T, A286V, V417A; gp120: A3T, N5K, W57D, E59V, Q86E, D105N, M133I, N138G, K143R, V144A, H145Q, N157S, N159T, N161G, S162P, Y163L, R164N, L165N, I166T, N167S, N201K, K204E, E240K, K277R, H280Y, Q287H, Y290H, A291T, G293D, D294R, N304I, S306N, K312T, S335P, -365S, -366S, -367T, -373S, -374P, -375E, -376G, -377V, -378F, -380T, -381S, -382H, -383K, -384G, T385N, P389L, -436E, K474Q; gp41: I4L, F8L, E121D, T130I, R133N, N140I, N160T, S165T, N166K, K172R, D232G, R324G, A325V, G326L, R327T, V329I; nef: I10L, -11A, G29R, L58V, E64D, L76P, V85L, K92R, Q107R, H116N, I133T, G140E, K184Q, R192K, V194E, K198R; p17: D47N, N109R, G123V; p2: A7T, N9-, T10S, -12A; p24: N121T, R132G, N193H, V230I; p6: I21T, L35M; p7: R11K, V13I; pro: T12S; rev: R17Q, A47T, A54E; tat: K24R, G44D, Q63P; vif: E2*; vpr: R32K, I84T, R87A; vpu: V21I, V26A"}}}, {"name": "F1_NODE_0000017", "node_attrs": {"div": 0.10653, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T372C", "T396C", "G401A", "G520C", "C669A", "A1142G", "G1302A", "G1709A", "A2224G", "G2431A", "C2797T", "A3238G", "G3775A", "G4150A", "C4381T", "G4549A", "C5333T", "A5566G", "G5747T", "A5957C", "-6172C", "-6174A", "-6176G", "-6177G", "-6178C", "-6180A", "A6182T", "A6186C", "G6188A", "A6191C", "T6193A", "-6198G", "T6199C", "A6201C", "A6206C", "C6208A", "G6267A", "A6268T", "C6278T", "C6591T", "A6776G", "A6808T", "-6832C", "C6849A", "C6874T", "G6936A", "T6946-", "-6987A", "-7152G", "G7160A", "C7463A", "A7676G", "G7915A", "G8130A", "A8184G", "A8297G", "T8440C", "G8441A", "G8462A", "C8504T", "T8505G", "G8929A"], "RT-p51": ["A435T"], "RT-p66": ["A435T"], "gp120": ["K35Q", "S246F", "L281I", "T308A", "T332K", "G361E"], "gp41": ["L54M", "S125G", "R276K", "Q294R"], "nef": ["V33A", "L55V", "E65D", "R196K"], "p17": ["G62A", "Q112K"], "p24": ["V191I"], "vif": ["N19S"], "vpu": ["R47I"]}, "labels": {"aa": "RT-p51: A435T; RT-p66: A435T; gp120: K35Q, S246F, L281I, T308A, T332K, G361E; gp41: L54M, S125G, R276K, Q294R; nef: V33A, L55V, E65D, R196K; p17: G62A, Q112K; p24: V191I; vif: N19S; vpu: R47I"}}, "children": [{"name": "KU168274", "node_attrs": {"div": 0.13194, "accession": "KU168274", "clade_membership": {"value": "F1"}, "country": {"value": "RO"}, "date": {"value": 2003.0}, "Strain_name": {"value": "LA20DuCl"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T24C", "G47A", "A50G", "G92A", "T200C", "A286G", "T456C", "C503T", "G609A", "C645A", "G683A", "G689A", "A730T", "G771T", "T884C", "C944T", "A991C", "C994T", "A1089G", "A1115T", "T1166C", "G1404A", "A1415G", "-1457T", "C1460-", "A1461G", "A1474G", "A1475G", "A1476G", "T1501C", "T1505C", "C1535T", "A1536G", "A1567G", "A1619G", "A1701T", "G1736A", "T1741A", "C1744T", "-1746A", "-1747C", "-1748C", "T1783A", "G1845A", "A1963G", "T2062C", "A2098C", "C2149G", "G2173A", "A2179G", "C2263T", "G2273A", "A2519G", "T2579C", "G2580A", "C2584T", "A2592G", "G2656A", "G2683A", "C2723T", "T2824C", "T2905C", "G2951A", "C2975A", "A3058C", "T3331C", "C3346T", "T3431G", "G3442A", "A3476C", "T3517C", "C3542T", "A3565G", "G3595A", "A3655C", "G3679A", "G3766A", "G3787A", "C3823T", "T3844A", "T3904C", "T3962C", "G4354C", "C4357T", "A4555G", "G4597A", "G4864T", "A5159G", "A5215C", "A5236G", "G5257A", "A5293G", "C5294T", "A5305G", "G5382A", "C5425A", "T5471A", "T5475C", "C5481T", "A5555C", "T5567A", "C5568T", "C5579T", "C5614T", "G5617A", "G5629T", "G5631A", "A5644G", "C5663T", "G5737A", "A5738G", "G5784A", "G5790A", "C5792A", "A5793G", "C5795A", "T5799G", "G5802C", "G5808T", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C6010T", "T6023A", "T6025A", "C6026T", "G6029A", "A6050G", "-6170T", "-6171T", "-6175T", "T6187C", "C6190T", "G6195A", "G6203T", "G6214A", "C6228T", "A6229G", "A6248G", "A6251G", "G6263A", "T6264C", "A6273G", "T6279C", "T6321A", "C6322A", "A6323G", "T6328C", "A6330G", "T6334G", "G6379A", "T6454C", "T6460C", "A6491G", "C6496T", "C6499T", "A6525G", "C6559T", "T6641A", "C6667T", "C6692T", "A6693C", "A6714G", "T6733G", "A6753G", "T6769G", "G6807T", "A6819G", "A6820C", "G6821A", "T6824C", "T6825C", "-6835T", "-6836A", "A6839G", "A6840C", "T6851C", "C6922T", "A6937G", "-6946A", "-6947A", "-6948C", "-6949T", "-6950A", "-6951A", "-6952T", "G7004A", "G7005A", "A7040G", "C7045A", "C7123A", "G7150T", "-7151G", "T7153G", "A7155C", "A7289C", "A7372G", "G7391A", "T7606C", "A7620G", "G7633T", "A7641G", "C7642T", "A7668G", "A7689C", "A7732G", "T7801C", "G7862A", "G7947A", "G7977A", "A7992G", "A8019C", "A8098G", "G8136T", "A8163G", "T8215G", "G8255A", "T8298C", "T8302C", "T8348G", "G8349A", "G8350A", "A8367-", "G8368-", "T8369-", "C8370-", "T8371-", "A8372-", "G8373-", "C8374-", "T8375-", "G8376-", "G8377-", "G8378-", "A8396G", "A8426G", "C8450T", "A8457G", "G8458A", "C8499T", "A8519G", "A8537C", "C8590G", "G8595T", "A8653C", "G8654A", "G8666A", "C8688A", "G8822C", "G8834A", "C8835T", "A8869G", "A8886C", "G8955A", "A8970G", "G8971A", "A8972T", "T8974G", "-8978A", "A8980G", "G9008A", "T9074G", "T9109C", "G9132A", "A9135G", "G9177A"], "INT": ["S124G"], "RT-p51": ["V60I", "I142V", "C162H", "K166R", "E207A", "A286T", "P294T", "T377M"], "RT-p66": ["V60I", "I142V", "C162H", "K166R", "E207A", "A286T", "T377M", "S446A", "H483Y", "Q520H"], "gp120": ["W57R", "E59K", "N66D", "A125V", "N132D", "M133V", "V137T", "K140R", "L142S", "N157D", "N159S", "N160K", "N167H", "N213D", "K224R", "T253A", "S263T", "H280S", "Q287R", "A291T", "T292D", "G293R", "D294I", "K300R", "-318V", "-328N", "K329A", "F333L", "N364K", "-365T", "-366N", "T385-", "I396V", "N397K", "-433D", "-436R", "K479Q"], "gp41": ["A30T", "K106R", "D109E", "Q110D", "D113G", "K122R", "N129T", "V187I", "G225E", "D230G", "N239T", "G278V", "N287S", "V318I", "I332A"], "nef": ["G3N", "S9-", "I10-", "G12-", "R39E", "P53S", "V85L", "Q104P", "H116N", "E160D", "E176G", "K182Q", "D205N"], "p17": ["V92I", "L104I", "Y132F"], "p2": ["N9S", "-12V", "I13-"], "p24": ["A14S", "H87P", "A88V", "S120G", "E128D"], "p6": ["T8S", "L35Q"], "p7": ["K3R", "S4G", "R11K", "I12T", "I24V", "K34R"], "pro": ["G16E"], "rev": ["K14R", "Y18I", "E57D", "N84D"], "tat": ["Q17K", "F32Y", "Q60P", "I64D", "P68L"], "vif": ["R4K", "R93M"], "vpr": ["T19A", "I63M", "A93T"], "vpu": ["H3Y", "V4I", "A8S", "I13V", "A19V", "E44R"]}, "labels": {"aa": "INT: S124G; RT-p51: V60I, I142V, C162H, K166R, E207A, A286T, P294T, T377M; RT-p66: V60I, I142V, C162H, K166R, E207A, A286T, T377M, S446A, H483Y, Q520H; gp120: W57R, E59K, N66D, A125V, N132D, M133V, V137T, K140R, L142S, N157D, N159S, N160K, N167H, N213D, K224R, T253A, S263T, H280S, Q287R, A291T, T292D, G293R, D294I, K300R, -318V, -328N, K329A, F333L, N364K, -365T, -366N, T385-, I396V, N397K, -433D, -436R, K479Q; gp41: A30T, K106R, D109E, Q110D, D113G, K122R, N129T, V187I, G225E, D230G, N239T, G278V, N287S, V318I, I332A; nef: G3N, S9-, I10-, G12-, R39E, P53S, V85L, Q104P, H116N, E160D, E176G, K182Q, D205N; p17: V92I, L104I, Y132F; p2: N9S, -12V, I13-; p24: A14S, H87P, A88V, S120G, E128D; p6: T8S, L35Q; p7: K3R, S4G, R11K, I12T, I24V, K34R; pro: G16E; rev: K14R, Y18I, E57D, N84D; tat: Q17K, F32Y, Q60P, I64D, P68L; vif: R4K, R93M; vpr: T19A, I63M, A93T; vpu: H3Y, V4I, A8S, I13V, A19V, E44R"}}}, {"name": "DQ979023", "node_attrs": {"div": 0.14459, "accession": "DQ979023", "clade_membership": {"value": "F1"}, "country": {"value": "ES"}, "Strain_name": {"value": "P1146"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A256-", "A261-", "A269-", "-334A", "A426C", "A482C", "G508A", "C536A", "G595A", "A632C", "A774C", "A810G", "C950T", "A959G", "T978C", "A1157G", "G1256A", "T1322C", "C1362T", "A1415T", "C1440A", "A1449G", "A1498G", "A1588G", "G1601A", "C1658G", "C1670G", "T1679C", "A1700T", "C1706T", "C1707G", "G1727A", "A1731G", "-1733A", "-1734G", "-1735T", "G1739A", "A1745-", "C1749-", "C1750-", "C1751-", "T1752-", "C1753-", "C1756T", "A1758C", "G1760T", "G1766A", "A1774G", "A1857G", "G2038A", "C2047T", "A2161G", "A2182G", "G2311A", "A2341G", "A2395G", "A2419G", "A2475T", "C2476T", "T2536C", "G2539A", "A2557G", "G2602T", "A2612G", "G2616A", "C2626A", "G2665A", "A2680G", "G2692A", "G2707A", "C2715A", "C2734G", "A2827C", "T2863C", "G2872A", "C2885T", "A2925G", "G2984A", "T3045C", "T3049C", "C3075T", "G3173A", "A3224C", "T3225A", "A3247G", "G3307C", "C3322T", "C3399T", "A3400G", "C3492T", "T3493G", "G3506A", "A3507G", "T3541A", "A3629C", "C3763T", "A3808C", "T3820C", "A3825G", "A3877G", "G3997A", "T4024C", "C4039T", "C4132T", "G4145A", "G4176A", "A4196G", "T4216C", "A4333G", "T4388G", "G4495A", "A4611G", "G4631A", "C4702G", "C4728A", "T4730C", "G4764A", "T4776A", "G4864A", "G4888A", "T4937A", "G5013A", "G5014A", "T5027C", "A5093G", "A5112G", "G5121A", "A5134G", "G5143A", "A5215T", "A5230G", "C5237T", "T5239C", "A5247G", "A5302T", "G5336A", "T5356C", "T5439C", "C5451T", "A5463T", "A5491G", "A5548C", "G5556A", "A5557G", "G5558A", "C5563A", "C5568G", "A5587G", "G5599T", "A5603C", "C5630T", "A5643C", "A5659T", "G5668A", "T5704A", "G5706A", "G5717A", "A5720G", "A5743T", "C5763T", "G5775A", "G5781T", "T5787A", "G5788C", "C5789T", "C5801G", "C5804A", "C5806G", "T5850C", "G5861A", "G5864A", "C5866G", "A5867G", "A5908G", "G5914A", "T5944A", "A5955T", "T5964C", "G6024A", "A6059G", "G6167A", "-6170G", "-6171C", "-6175G", "C6183T", "C6189G", "C6202T", "C6205G", "C6207A", "C6220G", "A6221G", "C6222A", "G6226A", "C6233A", "A6261T", "T6289G", "G6290T", "A6303G", "A6313C", "A6320C", "T6325C", "A6333C", "A6336G", "A6344G", "G6345A", "C6353A", "A6394G", "T6397C", "G6451A", "T6460G", "A6461G", "A6464G", "A6478G", "A6489G", "A6532T", "T6545C", "A6570G", "T6598C", "G6611A", "A6616G", "A6693G", "T6694C", "A6706G", "C6797G", "G6803A", "-6833A", "-6834A", "A6848C", "G6935A", "A6945-", "-6984C", "-6985A", "-6986A", "-6992A", "-6993T", "-6994A", "-6995A", "-6996G", "-6997C", "-6998T", "-6999C", "C7006G", "G7076A", "T7081C", "G7095A", "C7102A", "A7129C", "T7130A", "G7132A", "A7148C", "-7151C", "A7157G", "G7161C", "G7162T", "A7163G", "C7164A", "T7165A", "G7168A", "C7170T", "C7171A", "G7244A", "A7268G", "G7269A", "A7275G", "A7276G", "G7309A", "A7313C", "A7399T", "G7453A", "A7505C", "G7517C", "G7563A", "G7594C", "T7622A", "C7625T", "G7627T", "G7630C", "G7631C", "C7678T", "A7696C", "A7700C", "A7726G", "A7734T", "G7753A", "G7754T", "A7782G", "T7796A", "T7813C", "A7818G", "A7846G", "A7858G", "G7873A", "C7874T", "G7883T", "T7913C", "G7995A", "G8006A", "G8008A", "C8009A", "A8029C", "C8044G", "C8051T", "T8067G", "A8073G", "A8079T", "A8117G", "G8125A", "G8132A", "A8180G", "A8191C", "C8213T", "T8251C", "C8265T", "G8276A", "C8277T", "A8284G", "G8288A", "C8291A", "A8323T", "G8329A", "G8330T", "A8361-", "A8362-", "A8363-", "T8366G", "G8399A", "G8408A", "A8409G", "C8411A", "C8412G", "C8413A", "T8414A", "A8455C", "A8459T", "T8486G", "G8531T", "A8537T", "A8540G", "C8568G", "T8594C", "C8603T", "A8617G", "T8646C", "G8666C", "C8687T", "A8701T", "T8740C", "A8746G", "C8747G", "A8750G", "A8762G", "G8787C", "A8788C", "G8795T", "A8824C", "A8869C", "A8874G", "A8887T", "C8904A", "G8905T", "C8906G", "A8935C", "C8966T", "C9015T"], "INT": ["E11D", "N17S", "G134D", "I141V", "D193E", "S205A", "D279G", "D286N"], "RT-p51": ["Y127F", "E169D", "T173A", "R174K", "D177E", "K277R", "A297T", "V317A", "A327V", "A360T", "T377Q", "E404D", "T435M"], "RT-p66": ["Y127F", "E169D", "T173A", "R174K", "D177E", "K277R", "T294P", "A297T", "V317A", "A327V", "A360T", "T377Q", "E404D", "T435M", "A466V", "E471R", "K512Q"], "gp120": ["A3T", "D4K", "N5D", "E34V", "V37A", "W57Y", "K69E", "D105N", "D109-", "T110-", "-122E", "-123E", "Q127K", "E136V", "H145Q", "A146S", "K150R", "N159D", "N160T", "N161T", "D202E", "K203E", "K204E", "K212R", "E239G", "H280R", "-315E", "Q316R", "R317I", "K332Q", "E361K", "N364T", "-378N", "-380I", "-381S", "-382S", "-383N", "-384G", "A408T", "S414N", "L426I", "-433E", "N435D", "-436T", "T437E", "T439I", "E464K", "R472E", "K474R"], "gp41": ["I4L", "Q32H", "V72L", "C87Y", "S107T", "Q108Y", "K144I", "A151S", "N160S", "S165T", "K172R", "L191F", "V194L", "E215G", "R231K", "V235I", "L242F", "D247E", "R250W", "F255C", "Y257C", "H259L", "N272D", "G277R", "S293G", "L304F", "A321V", "A325I", "V329I", "L330I", "I332V", "L340F", "A343S"], "nef": ["K7R", "S9L", "I10A", "A26T", "G29R", "D38A", "R39S", "E63D", "L76V", "G83A", "K92R", "Y102H", "E108D", "Y120F", "I133T", "Y135W", "D149P", "E151D", "N161T", "E176A", "R178G", "K182M", "R188M", "K198T"], "p1": ["H9Q"], "p17": ["M31L", "R58K", "C87Y", "E99D"], "p2": ["Q6K", "N9G"], "p24": ["I15L", "I27V", "S225G"], "p6": ["P10A", "R18G", "E19V", "I21V", "P23L", "S24H", "P25-", "K27-", "D32G"], "p7": ["K41R"], "pro": ["K20R"], "rev": ["A15T", "Y18C", "R53H", "A54K", "S61R", "R66G", "A68V", "E90G", "A93T", "R95K", "E111G", "K115Q"], "tat": ["K29N", "T39A", "T58H", "P59R", "S61D", "Q63K", "I64V", "K71E", "N80D"], "vif": ["I9V", "S39C", "H48N", "E60K", "L64I", "R93K", "G101D", "D117E", "G143K", "K176E", "E179K", "H183R", "S186N"], "vpr": ["Q3R", "G6E", "H45Y", "N48S", "Q66H", "I84T"], "vpu": ["A8V", "L12F", "I18L", "V21I", "L33I", "R37K", "K38R", "I46L", "E58D", "M71V"]}, "labels": {"aa": "INT: E11D, N17S, G134D, I141V, D193E, S205A, D279G, D286N; RT-p51: Y127F, E169D, T173A, R174K, D177E, K277R, A297T, V317A, A327V, A360T, T377Q, E404D, T435M; RT-p66: Y127F, E169D, T173A, R174K, D177E, K277R, T294P, A297T, V317A, A327V, A360T, T377Q, E404D, T435M, A466V, E471R, K512Q; gp120: A3T, D4K, N5D, E34V, V37A, W57Y, K69E, D105N, D109-, T110-, -122E, -123E, Q127K, E136V, H145Q, A146S, K150R, N159D, N160T, N161T, D202E, K203E, K204E, K212R, E239G, H280R, -315E, Q316R, R317I, K332Q, E361K, N364T, -378N, -380I, -381S, -382S, -383N, -384G, A408T, S414N, L426I, -433E, N435D, -436T, T437E, T439I, E464K, R472E, K474R; gp41: I4L, Q32H, V72L, C87Y, S107T, Q108Y, K144I, A151S, N160S, S165T, K172R, L191F, V194L, E215G, R231K, V235I, L242F, D247E, R250W, F255C, Y257C, H259L, N272D, G277R, S293G, L304F, A321V, A325I, V329I, L330I, I332V, L340F, A343S; nef: K7R, S9L, I10A, A26T, G29R, D38A, R39S, E63D, L76V, G83A, K92R, Y102H, E108D, Y120F, I133T, Y135W, D149P, E151D, N161T, E176A, R178G, K182M, R188M, K198T; p1: H9Q; p17: M31L, R58K, C87Y, E99D; p2: Q6K, N9G; p24: I15L, I27V, S225G; p6: P10A, R18G, E19V, I21V, P23L, S24H, P25-, K27-, D32G; p7: K41R; pro: K20R; rev: A15T, Y18C, R53H, A54K, S61R, R66G, A68V, E90G, A93T, R95K, E111G, K115Q; tat: K29N, T39A, T58H, P59R, S61D, Q63K, I64V, K71E, N80D; vif: I9V, S39C, H48N, E60K, L64I, R93K, G101D, D117E, G143K, K176E, E179K, H183R, S186N; vpr: Q3R, G6E, H45Y, N48S, Q66H, I84T; vpu: A8V, L12F, I18L, V21I, L33I, R37K, K38R, I46L, E58D, M71V"}}}]}]}]}]}]}]}]}, {"name": "F1_NODE_0000018", "node_attrs": {"div": 0.066, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A1445-", "C2083T", "A2524G", "G3142A", "A3224C", "G4971A", "A5159G", "G5614T", "G5737A", "T5929C", "A6020G", "-6809G", "G6821-", "G7995A", "C8606T", "T8974G", "G8991A", "A9041C", "T9068C"], "RT-p51": ["T377L"], "gp120": ["-319A"], "gp41": ["R231K", "L304F"], "vpr": ["T19A"], "vpu": ["D3Y", "E44K"]}, "labels": {"aa": "RT-p51: T377L; gp120: -319A; gp41: R231K, L304F; vpr: T19A; vpu: D3Y, E44K"}}, "children": [{"name": "AF077336", "node_attrs": {"div": 0.10028000000000001, "accession": "AF077336", "clade_membership": {"value": "F1"}, "country": {"value": "BE"}, "date": {"value": 1993.0}, "Strain_name": {"value": "VI850"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A205-", "A239G", "A301G", "-304T", "-305T", "G354A", "C379A", "G394A", "A418G", "G424A", "G438A", "G508A", "G519A", "G562A", "A563G", "A571T", "A607G", "T610C", "A613G", "A619C", "G620A", "G641C", "G771T", "A878C", "C879A", "A880C", "A1002G", "T1003C", "A1034G", "A1088G", "A1089G", "A1115C", "C1169T", "G1192A", "G1232A", "A1242G", "C1243T", "A1263T", "A1271C", "C1295A", "C1350A", "G1404A", "T1427C", "C1439T", "A1452T", "-1455G", "C1481T", "A1500G", "G1709A", "A1777G", "G1780A", "C1826T", "G1841A", "C1853A", "A1861G", "A2099G", "A2185G", "A2210C", "C2211T", "C2301G", "G2328A", "T2356C", "G2469A", "A2515T", "C2613T", "A2614G", "T2620C", "T2632C", "A2727G", "T2789C", "G2837A", "T2863C", "A2925G", "A2928C", "A2989G", "G3008A", "G3010A", "A3027G", "G3094A", "C3095G", "A3097C", "A3124G", "G3125A", "G3127C", "A3164G", "T3172G", "G3211A", "C3224T", "A3247G", "A3277G", "G3307T", "A3364G", "T3376C", "A3409C", "C3475T", "G3477A", "G3483A", "G3490A", "T3505G", "C3542T", "A3553G", "G3595A", "A3616G", "A3619G", "G3643A", "T3644A", "A3684G", "A3761G", "A3838G", "G3866A", "T3928C", "T3970C", "A3985C", "A3988G", "G4020A", "A4021G", "C4042T", "C4079T", "C4110T", "G4160T", "G4183A", "T4198C", "G4237A", "G4252A", "A4407G", "A4429G", "G4469A", "G4550A", "A4561G", "A4564G", "G4605T", "C4667T", "C4674T", "A4695G", "T4702C", "G4719C", "A4737G", "C4771T", "T4805C", "A4806C", "T4820A", "G4864A", "A4895G", "C5006T", "A5055G", "G5069A", "T5072G", "T5073C", "A5085C", "A5099G", "G5167A", "C5168A", "A5200G", "C5221T", "T5224C", "A5233C", "T5260C", "A5335G", "A5355G", "G5359C", "T5384C", "A5396G", "C5412T", "G5463A", "T5479C", "C5481A", "G5543A", "G5565A", "A5566G", "A5568G", "G5575A", "C5578T", "G5581C", "A5664C", "G5729A", "G5730A", "A5958G", "T5964C", "T5971C", "C5974T", "T5980C", "G6023T", "G6029A", "T6151G", "T6160C", "T6169-", "-6180C", "T6184C", "C6189A", "A6192G", "A6194-", "C6196-", "A6197-", "A6200-", "-6203A", "-6205G", "-6207A", "C6208A", "C6209-", "T6210-", "G6211-", "G6218-", "A6232G", "G6284T", "C6287T", "A6288C", "A6292G", "A6304G", "C6322A", "A6323G", "A6324G", "T6325C", "T6331C", "T6337C", "-6340T", "T6409C", "C6412T", "G6442A", "G6451A", "A6465G", "G6466A", "G6478A", "A6576G", "A6581G", "G6605A", "A6682G", "A6686-", "G6687-", "T6688-", "T6690-", "C6692G", "-6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701T", "-6702T", "G6716A", "T6721C", "C6748A", "G6767A", "A6790C", "T6794C", "A6796G", "A6799G", "C6800T", "G6801A", "G6802T", "A6812G", "G6814A", "-6821T", "T6823G", "T6829C", "-6830C", "-6831C", "-6832T", "-6833A", "-6834A", "A6840C", "A6842G", "T6857C", "C6858A", "A6926G", "-6947G", "-6948A", "-6949C", "-6950A", "-6951C", "-6952A", "-6953G", "-6954G", "-6955C", "-6956T", "-6957C", "-6958C", "-6959A", "-6960A", "-6961T", "-6962A", "-6963A", "-6964T", "T7003-", "-7005G", "A7027G", "A7056G", "G7076A", "G7079T", "C7124T", "T7156C", "A7158T", "-7162G", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "G7182A", "A7225G", "C7250T", "G7269A", "A7289C", "T7308C", "A7313C", "A7342G", "G7343A", "A7351G", "C7356-", "A7372G", "C7553A", "T7555C", "G7630A", "G7640A", "A7669G", "A7692T", "G7701A", "G7702A", "A7705G", "A7714G", "G7717A", "G7720A", "G7759A", "A7837G", "G7873A", "A8011C", "A8019C", "T8037C", "C8047T", "G8125C", "C8146T", "A8172G", "T8206C", "T8210C", "C8213T", "G8242A", "G8255A", "C8265T", "T8321G", "T8322C", "A8338G", "T8348G", "T8366C", "A8388G", "A8391G", "G8407A", "C8415A", "A8446G", "A8456C", "G8465A", "G8490A", "T8568G", "T8582C", "T8595G", "C8661G", "A8662G", "G8666T", "T8668C", "T8759G", "G8762A", "G8795A", "A8801G", "C8835T", "T8864G", "A8887G", "C8904A", "C8978A", "-9009G", "G9011C", "-9014T", "G9015C", "C9017A", "C9018G", "A9119G", "A9135G"], "INT": ["V31I", "G82E", "T112I", "A129S", "M154I", "K211R", "D232N", "V259I", "G277V"], "RT-p51": ["I2V", "T39L", "T69S", "R78K", "R125K", "T173M", "K211R", "Y232H", "D248N", "K277R", "Q278P", "E305K", "K311R", "Q334D", "E344N", "M357V", "T386R", "E404D", "E438D"], "RT-p66": ["I2V", "T39L", "T69S", "R78K", "R125K", "T173M", "K211R", "Y232H", "D248N", "K277R", "Q278P", "E305K", "K311R", "Q334D", "E344N", "M357V", "T386R", "E404D", "E438D", "R461K", "R463K", "H483Y", "L517I", "K530R", "I556V"], "gp120": ["K35R", "V37A", "V57F", "E59K", "-106A", "-107T", "-111N", "-112S", "E122-", "G124-", "A125-", "I126-", "Q127-", "V144L", "H145S", "N157G", "N161S", "K204R", "D241G", "I243V", "D251N", "S278G", "I281L", "A288T", "D294A", "V305I", "K312N", "R316Y", "K320E", "-326P", "-328N", "K329T", "T330A", "S335Q", "N358D", "-376G", "-377S", "-378N", "-379N", "-380G", "E401G", "A408T", "A409S", "N433E", "N434S", "-436I", "T437-", "G443E", "K479Q"], "gp41": ["V2A", "M4L", "D109E", "D113N", "E130I", "R133K", "N239T", "V245A", "Q290R", "V318I", "A321V", "L340A"], "nef": ["I16V", "R17G", "R22Q", "P25T", "Q35R", "E38D", "A50T", "L76V", "Q107G", "E108D", "I109T", "F139L", "D174E", "K182R", "R188S"], "p17": ["V7I", "A15E", "R20Q", "K28R", "R30K", "V35I", "R58Q", "G62R", "R76K", "Y79F", "K91R", "V92A", "E93G", "K95T"], "p2": ["T8-", "T10S"], "p24": ["A14S", "Q50T", "I91A", "S120G", "E128D", "R154K", "T171V", "T178S", "E180D", "P207T"], "p6": ["E33G", "G34E"], "p7": ["I12V"], "pro": ["V15I", "L19I"], "rev": ["R17K", "Y18C", "I55L", "E57D", "P67S", "T93P", "P100S"], "tat": ["L3P", "N7S", "Y35Q", "R56H", "I64V", "D67N", "P68S", "V69L"], "vif": ["V7L", "H30Y", "R37G", "F39S", "E45Q", "I51V", "A62V", "T74P", "D78E", "R93K", "K157E", "K167Q"], "vpr": ["L22I", "H77R", "I84V", "R85P"], "vpu": ["A8G", "R41K"]}, "labels": {"aa": "INT: V31I, G82E, T112I, A129S, M154I, K211R, D232N, V259I, G277V; RT-p51: I2V, T39L, T69S, R78K, R125K, T173M, K211R, Y232H, D248N, K277R, Q278P, E305K, K311R, Q334D, E344N, M357V, T386R, E404D, E438D; RT-p66: I2V, T39L, T69S, R78K, R125K, T173M, K211R, Y232H, D248N, K277R, Q278P, E305K, K311R, Q334D, E344N, M357V, T386R, E404D, E438D, R461K, R463K, H483Y, L517I, K530R, I556V; gp120: K35R, V37A, V57F, E59K, -106A, -107T, -111N, -112S, E122-, G124-, A125-, I126-, Q127-, V144L, H145S, N157G, N161S, K204R, D241G, I243V, D251N, S278G, I281L, A288T, D294A, V305I, K312N, R316Y, K320E, -326P, -328N, K329T, T330A, S335Q, N358D, -376G, -377S, -378N, -379N, -380G, E401G, A408T, A409S, N433E, N434S, -436I, T437-, G443E, K479Q; gp41: V2A, M4L, D109E, D113N, E130I, R133K, N239T, V245A, Q290R, V318I, A321V, L340A; nef: I16V, R17G, R22Q, P25T, Q35R, E38D, A50T, L76V, Q107G, E108D, I109T, F139L, D174E, K182R, R188S; p17: V7I, A15E, R20Q, K28R, R30K, V35I, R58Q, G62R, R76K, Y79F, K91R, V92A, E93G, K95T; p2: T8-, T10S; p24: A14S, Q50T, I91A, S120G, E128D, R154K, T171V, T178S, E180D, P207T; p6: E33G, G34E; p7: I12V; pro: V15I, L19I; rev: R17K, Y18C, I55L, E57D, P67S, T93P, P100S; tat: L3P, N7S, Y35Q, R56H, I64V, D67N, P68S, V69L; vif: V7L, H30Y, R37G, F39S, E45Q, I51V, A62V, T74P, D78E, R93K, K157E, K167Q; vpr: L22I, H77R, I84V, R85P; vpu: A8G, R41K"}}}, {"name": "F1_NODE_0000019", "node_attrs": {"div": 0.06837, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G998A", "A3805G", "T4207C", "T4247C", "C6010T", "A6186C", "-6195A", "T6279A", "-7162T", "G7947A", "G8531A"], "gp120": ["L142Q", "-369N"], "gp41": ["L54M", "G215E"], "p2": ["T10-", "-12T"], "tat": ["D80N"]}, "labels": {"aa": "gp120: L142Q, -369N; gp41: L54M, G215E; p2: T10-, -12T; tat: D80N"}}, "children": [{"name": "F1_NODE_0000020", "node_attrs": {"div": 0.07383, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T372C", "G428A", "A530G", "T575C", "A697-", "C774A", "C1091T", "A1242G", "C1350A", "C1456-", "-1458A", "-1459C", "-1746A", "-1747C", "T1783A", "G1841A", "C1960T", "A1979C", "G2461A", "T2779C", "A2925G", "G3100A", "A3274T", "A3334G", "A3667G", "G3686A", "G3989A", "C4110T", "A4111G", "T4388G", "G4727A", "A4773G", "C4803A", "C5237T", "G5630C", "G5706A", "A6030C", "-6198C", "-6212A", "-6216A", "-6217A", "A6324G", "T6337C", "T6457A", "A6465G", "A6576G", "-6689A", "-6691A", "-6693G", "A6734G", "T6735A", "A6776G", "A6812G", "T6835-", "A6848C", "-6947A", "-6948A", "-6949T", "-6950A", "-6951C", "T7003-", "A7148C", "T7150G", "A7190G", "G7712A", "A7765G", "C8590G", "-9009G", "G9011C", "-9014T", "G9015C", "C9017A", "C9018G", "A9095G"], "INT": ["V72I", "T112M", "S205A"], "RT-p51": ["K277R"], "RT-p66": ["K277R", "V531I"], "gp120": ["E59-", "-110T", "-112T", "-113N", "-123P", "N157S", "N201K", "K204R", "D241G", "D294E", "K320E", "-328N", "K332Q", "D365N", "N432Q", "N433S", "N446D"], "nef": ["A83G"], "p2": ["T8N", "N9T", "A11-"], "p24": ["L15I", "T171A", "P207T"], "pro": ["V15I", "N61H"], "vif": ["K63E", "H73N"], "vpr": ["H45Y"]}, "labels": {"aa": "INT: V72I, T112M, S205A; RT-p51: K277R; RT-p66: K277R, V531I; gp120: E59-, -110T, -112T, -113N, -123P, N157S, N201K, K204R, D241G, D294E, K320E, -328N, K332Q, D365N, N432Q, N433S, N446D; nef: A83G; p2: T8N, N9T, A11-; p24: L15I, T171A, P207T; pro: V15I, N61H; vif: K63E, H73N; vpr: H45Y"}}, "children": [{"name": "AF075703", "node_attrs": {"div": 0.10325000000000001, "accession": "AF075703", "clade_membership": {"value": "F1"}, "country": {"value": "FI"}, "date": {"value": 1993.0}, "Strain_name": {"value": "FIN9363"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A303T", "A417C", "C471A", "T473A", "G508A", "G520C", "C525A", "C537A", "G579A", "A595T", "G609A", "G641T", "A700G", "A701C", "G702T", "-704A", "-705C", "-706A", "-707A", "-708A", "-709G", "-710G", "C767T", "A839T", "C950T", "C1004T", "T1037C", "A1115C", "A1160G", "C1244T", "C1316T", "C1330T", "C1342G", "C1351T", "A1387G", "G1419A", "C1481T", "A1486G", "T1559C", "A1562G", "A1587C", "G1588A", "A1595G", "C1688T", "T1722C", "T1728A", "G1736A", "A1740G", "A1743-", "C1744-", "C1745-", "-1748T", "A1759G", "C1775A", "C2005T", "G2008A", "T2011C", "A2051G", "G2074A", "T2129C", "G2134A", "A2203G", "A2215T", "A2241G", "A2314G", "T2335C", "A2616G", "A2858G", "G2872A", "T2890C", "G2947A", "A2971G", "G2993A", "G2995T", "G3010A", "G3074C", "G3077A", "A3080T", "T3121C", "A3123G", "C3271T", "G3379A", "C3412A", "A3421G", "C3475T", "C3589T", "G3595A", "G3766A", "A4063C", "C4204T", "T4234A", "A4424G", "G4549A", "A4555G", "T4609C", "G4735A", "A4760C", "G4835A", "T4919C", "A4986G", "A5046G", "G5049T", "A5061G", "C5125T", "G5167A", "T5188C", "G5217T", "G5218C", "T5228A", "T5281C", "G5289A", "G5290A", "A5299G", "C5397T", "A5431C", "C5444A", "T5451C", "A5491G", "G5543A", "G5565A", "A5601G", "T5614G", "G5629A", "C5636T", "A5643T", "A5652C", "C5663T", "T5679C", "A5687T", "A5703G", "A5733G", "A5738T", "G5803A", "A5842G", "T5857A", "A5863G", "C5866T", "A5867G", "G5882A", "C5916A", "T5920C", "C5924T", "G5948T", "G5962A", "T6024C", "C6026-", "T6027-", "G6028-", "G6029C", "C6030T", "A6037G", "G6050A", "A6059G", "A6065G", "C6087A", "C6115T", "T6134C", "T6169-", "-6180C", "T6187C", "A6194G", "-6199T", "-6201G", "-6203A", "-6205T", "-6207C", "-6213A", "-6214G", "-6215G", "G6220A", "A6266G", "G6267A", "A6292G", "T6315A", "T6325C", "-6340G", "A6354C", "A6457G", "C6487T", "A6489G", "A6525G", "A6526G", "G6566T", "A6573G", "A6599C", "C6619T", "T6652C", "G6716T", "C6748A", "G6767A", "C6777A", "A6799C", "G6802A", "-6821C", "C6822T", "G6935C", "G6936T", "-6952A", "-6953G", "-6954T", "-6955A", "-6956C", "-6957C", "-6958T", "-6959A", "-6960A", "-6961T", "-6962A", "-6963A", "-6964T", "-7005G", "A7037T", "A7126G", "A7163T", "G7271C", "A7273C", "A7281C", "A7290G", "A7299G", "G7311C", "T7322G", "G7324A", "G7340A", "A7342C", "A7373C", "A7426G", "T7433C", "A7439C", "G7440A", "C7463A", "C7561A", "G7630T", "G7640A", "G7658C", "C7690A", "A7692C", "G7701T", "A7722G", "A7733C", "A7734G", "A7750G", "C7755A", "C7770A", "A7771T", "A7782G", "C7792T", "T7796A", "C7805T", "G7807A", "A7937G", "G7938C", "G7944C", "C8048T", "G8125A", "T8164C", "C8165A", "C8169T", "G8170A", "C8213T", "G8280T", "G8318A", "C8320A", "T8321G", "C8336A", "A8409C", "A8487G", "A8531C", "T8558C", "A8597T", "C8609G", "T8613C", "G8682C", "A8735G", "A8739G", "A8750C", "T8789G", "T8864G", "G8888A", "G8917A", "A8953G", "C9078T", "T9084A", "A9135-", "G9137A", "A9144G"], "INT": ["E96D", "I217V"], "RT-p51": ["E40D", "K49R", "K174R", "N255D", "I292M", "E300N", "A327P", "E328K", "I329L", "Q343R"], "RT-p66": ["E40D", "K49R", "K174R", "N255D", "I292M", "E300N", "A327P", "E328K", "I329L", "Q343R"], "gp120": ["N1K", "N5D", "V10I", "T21N", "A32S", "V57A", "D66N", "K69E", "N71D", "T78K", "N105-", "-109A", "-111T", "-114D", "-115T", "-116S", "-117S", "-118T", "-119L", "-120K", "-121E", "R138E", "V154E", "N161S", "S162R", "N167T", "K212R", "K224R", "A238S", "E240G", "I249L", "H280R", "A288S", "V305I", "T308E", "E315D", "S323L", "N327-", "G361L", "-367V", "-368P", "-370N", "-371G", "I395F", "-436S", "T437S", "K472R", "A473P", "Q476P", "K479R", "K482R"], "gp41": ["G3A", "M4I", "L7V", "G13S", "I24L", "R46Q", "I84L", "D113N", "E119Q", "N129K", "E130T", "R133M", "E137K", "N140S", "K144R", "A151E", "A156D", "N160S", "S165T", "S212A", "R214T", "L288I", "T289I", "G326V", "G339R", "L340V", "L345I"], "nef": ["T23P", "E28A", "G29E", "R49G", "E63D", "V85F", "H89Q", "V114L"], "p17": ["K28Q", "M31I", "L46I", "R58Q", "G62A", "L64I", "L68I", "V82I", "Y87F", "V92I"], "p24": ["E128D", "T200I", "A204G", "T207I", "Q219R", "S225G", "V230I"], "p6": ["F15L", "F17I", "I21V", "-26R", "K27Q", "Q28E", "E29Q", "Q30K", "K31E", "D32E", "E33G", "G34Q", "L35Y", "Y36P"], "p7": ["K7R", "R41Q"], "pro": ["I85V"], "rev": ["R17K", "K30S", "E32D", "P67L", "S106H", "A108T"], "tat": ["T19P", "T23N", "T39A", "R56H", "A77P", "G79R"], "vif": ["M8T", "R50K", "N134D", "I154V", "A155S", "T159A", "T180I"], "vpr": ["W38F", "L42I", "R62K"], "vpu": ["Y3D", "A8T", "A10V", "L12F", "A19V", "Y27F", "K44I", "-69K", "E70-", "I79V"]}, "labels": {"aa": "INT: E96D, I217V; RT-p51: E40D, K49R, K174R, N255D, I292M, E300N, A327P, E328K, I329L, Q343R; RT-p66: E40D, K49R, K174R, N255D, I292M, E300N, A327P, E328K, I329L, Q343R; gp120: N1K, N5D, V10I, T21N, A32S, V57A, D66N, K69E, N71D, T78K, N105-, -109A, -111T, -114D, -115T, -116S, -117S, -118T, -119L, -120K, -121E, R138E, V154E, N161S, S162R, N167T, K212R, K224R, A238S, E240G, I249L, H280R, A288S, V305I, T308E, E315D, S323L, N327-, G361L, -367V, -368P, -370N, -371G, I395F, -436S, T437S, K472R, A473P, Q476P, K479R, K482R; gp41: G3A, M4I, L7V, G13S, I24L, R46Q, I84L, D113N, E119Q, N129K, E130T, R133M, E137K, N140S, K144R, A151E, A156D, N160S, S165T, S212A, R214T, L288I, T289I, G326V, G339R, L340V, L345I; nef: T23P, E28A, G29E, R49G, E63D, V85F, H89Q, V114L; p17: K28Q, M31I, L46I, R58Q, G62A, L64I, L68I, V82I, Y87F, V92I; p24: E128D, T200I, A204G, T207I, Q219R, S225G, V230I; p6: F15L, F17I, I21V, -26R, K27Q, Q28E, E29Q, Q30K, K31E, D32E, E33G, G34Q, L35Y, Y36P; p7: K7R, R41Q; pro: I85V; rev: R17K, K30S, E32D, P67L, S106H, A108T; tat: T19P, T23N, T39A, R56H, A77P, G79R; vif: M8T, R50K, N134D, I154V, A155S, T159A, T180I; vpr: W38F, L42I, R62K; vpu: Y3D, A8T, A10V, L12F, A19V, Y27F, K44I, -69K, E70-, I79V"}}}, {"name": "F1_NODE_0000021", "node_attrs": {"div": 0.08905, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A10G", "G92A", "C96T", "A224G", "A426C", "T495A", "A541C", "G614C", "G615A", "G743A", "A785G", "G869A", "T875C", "C944T", "G989A", "T1028C", "T1040C", "A1230C", "A1263T", "A1271C", "T1403C", "A1418G", "C1541A", "C1679T", "C1745A", "-1748C", "A1804G", "A1867T", "A2002C", "A2012G", "T2080G", "G2131A", "A2203C", "C2211T", "A2419G", "G2422A", "T2440C", "C2503T", "A2518C", "A2578G", "A2612G", "G2714A", "A2726G", "A2727C", "G2821A", "A3037G", "C3224G", "G3398A", "C3399T", "A3449G", "A3484G", "G3574A", "T3793C", "A3808C", "A3825G", "C3826T", "G3846A", "G3952A", "C3994T", "G4156A", "G4696A", "T4702C", "A4709G", "C4757A", "G4767A", "A4775G", "A4782G", "A5122G", "G5225A", "G5226A", "A5246C", "A5282C", "A5548C", "G5561A", "G5631A", "G5635A", "G5839A", "G5861A", "C5862A", "T6024A", "G6029A", "A6130G", "T6160C", "-6167A", "-6168G", "-6170G", "-6171C", "-6172C", "-6173A", "-6175C", "-6180A", "T6193C", "-6199C", "C6208-", "C6247T", "G6274A", "A6283G", "A6304G", "G6336A", "-6340C", "G6451A", "C6563T", "A6571G", "G6605A", "A6685G", "A6819G", "-6821T", "T6829C", "A6877G", "A6937G", "C7006-", "A7056G", "A7107G", "C7108A", "T7228C", "G7244C", "G7256A", "G7269A", "A7532C", "C7553A", "G7628A", "T7642A", "C7645T", "A7706C", "A7713C", "G7871A", "A8029G", "G8030A", "C8038G", "C8146T", "G8159T", "A8180G", "A8216G", "G8264A", "C8265T", "A8323C", "G8354A", "T8375G", "A8388G", "A8409G", "T8444G", "G8507A", "G8875A", "G9177A", "C9181T"], "INT": ["E11D", "N17S", "S24N"], "RT-p51": ["E36D", "T39I", "T173A", "E207K", "K211A", "L377V", "A435I"], "RT-p66": ["E36D", "T39I", "T173A", "D177E", "E207K", "K211A", "L377V", "A435I", "K452E"], "gp120": ["A3K", "V57D", "-59T", "N105S", "-106A", "D251N", "K322R", "E401G", "N418R", "E464Q", "V468I"], "gp41": ["K77Q", "D109K", "D113E", "I135L", "E137T", "A243T", "G286W", "S293G", "F304L", "N305D", "A321I", "L340F"], "nef": ["I16V", "T23A", "R178K"], "p17": ["M31L", "S54T", "Q69P", "E93D", "V94I"], "p24": ["T178S", "E180D"], "p6": ["P23T", "S24P", "P25S", "-26P", "L35Q", "K42R"], "pro": ["I72V"], "rev": ["T10A", "E11D", "V16I", "S61D", "L64V", "P100S", "G104V", "E111G"], "tat": ["T58P", "S62N"], "vif": ["R37K", "F39S", "E61K", "I66V", "E179G"], "vpr": ["G41N", "N48H", "I60L"], "vpu": ["A10T", "D78N"]}, "labels": {"aa": "INT: E11D, N17S, S24N; RT-p51: E36D, T39I, T173A, E207K, K211A, L377V, A435I; RT-p66: E36D, T39I, T173A, D177E, E207K, K211A, L377V, A435I, K452E; gp120: A3K, V57D, -59T, N105S, -106A, D251N, K322R, E401G, N418R, E464Q, V468I; gp41: K77Q, D109K, D113E, I135L, E137T, A243T, G286W, S293G, F304L, N305D, A321I, L340F; nef: I16V, T23A, R178K; p17: M31L, S54T, Q69P, E93D, V94I; p24: T178S, E180D; p6: P23T, S24P, P25S, -26P, L35Q, K42R; pro: I72V; rev: T10A, E11D, V16I, S61D, L64V, P100S, G104V, E111G; tat: T58P, S62N; vif: R37K, F39S, E61K, I66V, E179G; vpr: G41N, N48H, I60L; vpu: A10T, D78N"}}, "children": [{"name": "KU168275", "node_attrs": {"div": 0.11184000000000001, "accession": "KU168275", "clade_membership": {"value": "F1"}, "country": {"value": "x"}, "date": {"value": 2003.0}, "Strain_name": {"value": "LA21LeAn"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T30C", "T155C", "T200C", "T228A", "G259A", "A261T", "C264A", "-280G", "C281-", "A303T", "A399C", "A431G", "G455A", "C462A", "A495G", "G508A", "T539C", "C558A", "G641C", "G644A", "A676G", "C681A", "A699G", "A700C", "G702A", "-704C", "-705G", "-706G", "-707C", "-708A", "-709G", "-710C", "-711A", "-712A", "-713A", "-714G", "-715G", "C767T", "T773A", "A998G", "A1050G", "A1115C", "A1142C", "C1245T", "A1492C", "T1504C", "G1543A", "T1559C", "A1592G", "T1646C", "C1670A", "T1676C", "T1681C", "G1709A", "A1731G", "G1773A", "A1857G", "G2273A", "C2281T", "A2293G", "G2294A", "C2296T", "C2301G", "A2304G", "A2368G", "G2392A", "T2443C", "A2512G", "A2548G", "G2580A", "T2620C", "A2625G", "A2645G", "C2717T", "A2738T", "C2739T", "A2750G", "A2764G", "T2778A", "G2902A", "G3093A", "A3138T", "T3172G", "A3264G", "A3280G", "C3346T", "A3370G", "C3485A", "G3494A", "G3508A", "G3520A", "A3532G", "A3570C", "A3666T", "A3715G", "A3770G", "G4145A", "G4148A", "G4186A", "T4198C", "A4243G", "C4258T", "A4433G", "A4543C", "G4573A", "T4655C", "G4735A", "C4786T", "A4913C", "T4932G", "A4936C", "A5042T", "G5069A", "A5155T", "C5282T", "T5336G", "A5491G", "G5534A", "A5626T", "C5653T", "A5655C", "C5663T", "A5665G", "A5694G", "A5699G", "G5711A", "A5737G", "A5845G", "A5863T", "A5935T", "G5948T", "A5956C", "T5964C", "G6050A", "A6073G", "-6174G", "A6176T", "T6178C", "G6179A", "C6181T", "C6183G", "T6184C", "A6188G", "C6189G", "A6191C", "C6193A", "C6198G", "-6201C", "G6204-", "A6206-", "-6213C", "-6214A", "-6215G", "A6249G", "T6250A", "T6331A", "A6333G", "A6336C", "C6337A", "G6339A", "G6346A", "A6394C", "A6463C", "A6529C", "A6573G", "A6599C", "T6655C", "T6694C", "C6766T", "A6790G", "G6797A", "A6798C", "A6807G", "C6810A", "A6825G", "-6971A", "-6972G", "-6973T", "-6974A", "-6975C", "-6976T", "-6977C", "-6978A", "-6979A", "-6988T", "-6989A", "-6990A", "-6991C", "-6992A", "-6993C", "-6994T", "G7004-", "G7065A", "C7127T", "C7148G", "A7151-", "G7152-", "T7153-", "A7294G", "G7309T", "A7315G", "T7321C", "A7373G", "A7428G", "A7542G", "C7597A", "G7631C", "G7633A", "A7642G", "A7689G", "A7692T", "C7699T", "A7700G", "G7701A", "G7702C", "A7744G", "T7796A", "C7805T", "C7852T", "G7862A", "T7929C", "C8031G", "C8103T", "G8125A", "G8130A", "T8155C", "T8205G", "A8241C", "G8245A", "C8323T", "G8365A", "T8369A", "G8444A", "A8487G", "T8595G", "A8636T", "T8644C", "A8663G", "G8666T", "T8759G", "T8770A", "A8783T", "T8832C", "A8858G", "A8869C", "A8882C", "A8887T", "G8942A", "A9017G", "C9068T", "T9115C"], "INT": ["A124T", "A125T", "I220V", "E256D"], "RT-p51": ["V60I", "D67N", "T69S", "K70R", "C162Y", "D177G", "M184V", "H208Y", "T215F", "K219E", "L228H", "G333E", "N348I", "K390R"], "RT-p66": ["V60I", "D67N", "T69S", "K70R", "C162Y", "E177G", "M184V", "H208Y", "T215F", "K219E", "L228H", "G333E", "N348I", "K390R", "Q464K", "V467I", "E492A", "Q524L", "I559V"], "gp120": ["K3N", "A32S", "E34D", "V37A", "D66N", "-107S", "-109S", "-111L", "N113E", "N132R", "N159K", "N160K", "N161T", "S162N", "K203N", "E240G", "I249L", "H280R", "T308A", "E315T", "K318R", "A319E", "H324R", "N327-", "N369-", "R404Q", "Q432E", "S433-", "-436D"], "gp41": ["I24V", "N42S", "M54L", "Q80R", "E110Q", "N129S", "E130I", "R133D", "S165T", "V187I", "V190M", "L209P", "T243S", "A267V", "R276K", "I301S", "E313A"], "nef": ["S8N", "S9R", "R49G", "E98D", "I101T", "E108D", "F139L", "F143Y", "E176A", "K182M"], "p17": ["T54A", "R58Q", "L75I", "K114R", "Q116K", "-126D", "-127K"], "p24": ["T107A", "E128D", "S225G"], "p6": ["L1P", "R18G", "D32N"], "p7": ["Q9P", "V13A", "R26K"], "pro": ["K20R"], "rev": ["D7N", "D61E", "S103P"], "tat": ["T39A", "R53K"], "vif": ["R50K", "T67I", "S116A", "E117A", "N190I"], "vpr": ["E17D", "H77Q"], "vpu": ["I7L", "L16F", "A19V", "I20V", "K31R", "R35K", "K44E", "N80D"]}, "labels": {"aa": "INT: A124T, A125T, I220V, E256D; RT-p51: V60I, D67N, T69S, K70R, C162Y, D177G, M184V, H208Y, T215F, K219E, L228H, G333E, N348I, K390R; RT-p66: V60I, D67N, T69S, K70R, C162Y, E177G, M184V, H208Y, T215F, K219E, L228H, G333E, N348I, K390R, Q464K, V467I, E492A, Q524L, I559V; gp120: K3N, A32S, E34D, V37A, D66N, -107S, -109S, -111L, N113E, N132R, N159K, N160K, N161T, S162N, K203N, E240G, I249L, H280R, T308A, E315T, K318R, A319E, H324R, N327-, N369-, R404Q, Q432E, S433-, -436D; gp41: I24V, N42S, M54L, Q80R, E110Q, N129S, E130I, R133D, S165T, V187I, V190M, L209P, T243S, A267V, R276K, I301S, E313A; nef: S8N, S9R, R49G, E98D, I101T, E108D, F139L, F143Y, E176A, K182M; p17: T54A, R58Q, L75I, K114R, Q116K, -126D, -127K; p24: T107A, E128D, S225G; p6: L1P, R18G, D32N; p7: Q9P, V13A, R26K; pro: K20R; rev: D7N, D61E, S103P; tat: T39A, R53K; vif: R50K, T67I, S116A, E117A, N190I; vpr: E17D, H77Q; vpu: I7L, L16F, A19V, I20V, K31R, R35K, K44E, N80D"}}}, {"name": "KU168276", "node_attrs": {"div": 0.10438, "accession": "KU168276", "clade_membership": {"value": "F1"}, "country": {"value": "FR"}, "date": {"value": 2004.0}, "Strain_name": {"value": "LA22LeRe"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A66C", "A67T", "C179T", "G190A", "A192C", "C193G", "A194T", "A198G", "G542A", "C583T", "G597A", "A607G", "A611G", "G620A", "C626T", "C662G", "A663C", "-697A", "T734C", "G771C", "A899C", "A968T", "C1013T", "G1019A", "A1089G", "C1118A", "C1229T", "C1243T", "G1404A", "G1419A", "C1440A", "C1787T", "A1840G", "A2374G", "T2449C", "T2464A", "A2616G", "C2626A", "T2770G", "G3043A", "T3132G", "G3154A", "T3253C", "T3310C", "A3539G", "A3655G", "G3775A", "A3781G", "A3816G", "T3898C", "T3967C", "A4063C", "G4267A", "A4522T", "A4763T", "G4799A", "C4965T", "G5121A", "G5159A", "C5425A", "C5437G", "T5482C", "G5581A", "A5587G", "A5659G", "C5929T", "A5958G", "A6038G", "C6115T", "-6174C", "A6185G", "C6186G", "T6187C", "A6188C", "C6190A", "A6195G", "A6200-", "-6203T", "-6205A", "-6207G", "-6208G", "C6209A", "T6210A", "-6213T", "-6214C", "-6215C", "A6217G", "A6219G", "C6222A", "G6224-", "G6225-", "G6226-", "G6227-", "C6228-", "A6229-", "A6230-", "C6258T", "C6370A", "C6482A", "C6487T", "T6517C", "A6535G", "C6562T", "G6575A", "C6673T", "G6693A", "G6725A", "G6776C", "C6777A", "G6801A", "G6808A", "C6810T", "T6826C", "-6833C", "-6834C", "-6835T", "A6840G", "A6913G", "-6952A", "-6953G", "-6954G", "-6955A", "-6956A", "-6957C", "-6958T", "-6959A", "-6960A", "-6961T", "-7005A", "-7006A", "G7026A", "C7078T", "T7114C", "A7155C", "A7161G", "C7164G", "A7268G", "T7370G", "T7374C", "C7463A", "A7626G", "A7691G", "G7717A", "A7732C", "A7818G", "T7872C", "T7876G", "C8009A", "G8017C", "A8132C", "C8167A", "G8240A", "A8241G", "T8268C", "G8276A", "C8277T", "A8297G", "T8558G", "A8573G", "A8584T", "T8594G", "T8595C", "T8596A", "A8597T", "A8617G", "C8741T", "A8804G", "A8816G", "C8873A", "A8886C", "C8913T", "C8921T", "G8935A", "G8994A"], "INT": ["K14R", "E96D"], "RT-p51": ["D123E", "K174R", "D177E", "F346C"], "RT-p66": ["D123E", "K174R", "F346C", "I482V"], "gp120": ["K35R", "T62A", "-107T", "-109D", "-111G", "T112P", "-114S", "-115T", "G124-", "A125-", "I126-", "Q127-", "T135I", "P210T", "G241S", "A291T", "T308Q", "R316Q", "A319V", "-326P", "N328R", "K329-", "-367G", "-368T", "-370E", "-371T", "T385-", "R391Q", "N434T", "-436G", "T437S", "K472E"], "gp41": ["M4I", "S23A", "I24T", "Q108R", "E143D", "K172R", "V190T", "E313R", "L322S", "A325I", "I332V"], "nef": ["Y81F", "V85H", "K92R", "D177E", "K182Q", "R198K"], "p17": ["A83V", "V88I", "K91R", "D102E", "N109K", "K110Q"], "p2": ["Q6K"], "p24": ["A14P", "E79D", "M96I", "S120G", "A171V", "V230I"], "rev": ["A54E", "E57Q", "T93A", "E95A", "H107N"], "tat": ["Q17K", "P21A", "W36R", "V69I", "K71E"], "vif": ["H127Y", "G179R"], "vpr": ["G6E", "A19T"], "vpu": ["I18V"]}, "labels": {"aa": "INT: K14R, E96D; RT-p51: D123E, K174R, D177E, F346C; RT-p66: D123E, K174R, F346C, I482V; gp120: K35R, T62A, -107T, -109D, -111G, T112P, -114S, -115T, G124-, A125-, I126-, Q127-, T135I, P210T, G241S, A291T, T308Q, R316Q, A319V, -326P, N328R, K329-, -367G, -368T, -370E, -371T, T385-, R391Q, N434T, -436G, T437S, K472E; gp41: M4I, S23A, I24T, Q108R, E143D, K172R, V190T, E313R, L322S, A325I, I332V; nef: Y81F, V85H, K92R, D177E, K182Q, R198K; p17: A83V, V88I, K91R, D102E, N109K, K110Q; p2: Q6K; p24: A14P, E79D, M96I, S120G, A171V, V230I; rev: A54E, E57Q, T93A, E95A, H107N; tat: Q17K, P21A, W36R, V69I, K71E; vif: H127Y, G179R; vpr: G6E, A19T; vpu: I18V"}}}]}]}, {"name": "F1_NODE_0000022", "node_attrs": {"div": 0.07421, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G317A", "G562A", "A607G", "G771T", "C774T", "C897T", "-1444C", "-1445A", "-1446A", "-1455A", "-1457T", "C1460-", "A1461G", "G1543A", "A2026G", "G2761A", "T2770C", "T3492C", "T3544G", "C3674A", "G3766A", "A3802G", "C3940T", "A4025C", "G4060A", "G4131C", "G4354A", "C4428T", "A4737G", "T4793C", "C5018T", "A5085C", "G5225A", "C5478T", "C5579T", "G5631C", "A5845G", "C5866A", "C6004T", "A6130G", "-6167G", "-6168A", "-6170G", "-6172C", "-6173A", "G6179A", "T6343C", "T6793G", "C7217T", "C7690T", "A7691G", "A7714G", "A8323G", "C8494A", "T8595C", "T8684C", "T8789C", "G9012C", "C9016G"], "INT": ["I84L", "S119T", "T218I"], "RT-p66": ["V466A", "H483Q", "Q527K"], "gp120": ["D4E", "N160S", "S162-"], "gp41": ["I84L"], "nef": ["T51N", "V85L"], "p17": ["R76K", "K91R"], "p2": ["I13V"], "p24": ["A14S"], "p7": ["R26K"], "tat": ["P68L"], "vif": ["I51V", "K167Q"], "vpr": ["G41S"]}, "labels": {"aa": "INT: I84L, S119T, T218I; RT-p66: V466A, H483Q, Q527K; gp120: D4E, N160S, S162-; gp41: I84L; nef: T51N, V85L; p17: R76K, K91R; p2: I13V; p24: A14S; p7: R26K; tat: P68L; vif: I51V, K167Q; vpr: G41S"}}, "children": [{"name": "DQ189088", "node_attrs": {"div": 0.11316999999999999, "accession": "DQ189088", "clade_membership": {"value": "F1"}, "country": {"value": "AR"}, "date": {"value": 2002.0}, "Strain_name": {"value": "ARE933"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A235T", "C236T", "G378A", "A389G", "A426C", "C435T", "A440G", "T467C", "C471A", "T495G", "A530C", "C537A", "A566G", "A595C", "G609A", "G614A", "A656C", "C662T", "C679G", "A700C", "A735G", "T748C", "C765T", "T773C", "A803G", "A810G", "T988C", "A998G", "A1010C", "C1061T", "T1063C", "G1192A", "A1193G", "C1211T", "A1242G", "G1256A", "A1259G", "A1271T", "G1277A", "G1278A", "G1279A", "C1342G", "C1350T", "G1404A", "A1450G", "T1478C", "C1481T", "A1493G", "G1495A", "A1499G", "T1502A", "A1528T", "T1559C", "C1831T", "A1832G", "A1840C", "G1841A", "T1864G", "T2013C", "G2015T", "G2038A", "A2051T", "G2058T", "A2090C", "G2111A", "A2122C", "A2186C", "A2191G", "A2198T", "C2211T", "A2212T", "C2281T", "T2323C", "G2392A", "A2459G", "G2524A", "A2551G", "C2575T", "A2629G", "G2714A", "A2727C", "G2821A", "C2839G", "T2890A", "G3010A", "G3019A", "T3131C", "A3162G", "T3225A", "T3253C", "A3286G", "C3303T", "A3304C", "G3305A", "A3306G", "G3307T", "T3308A", "A3309T", "A3388G", "G3442A", "T3497C", "C3533A", "A3539G", "T3566G", "G3643A", "C3649A", "A3667G", "C3691T", "T3695G", "A3745G", "G3787A", "G3805A", "A3808C", "C3826T", "G3901A", "C3908T", "G3952A", "T4104C", "C4129T", "A4130C", "G4156A", "G4160T", "C4180T", "A4231G", "A4376G", "A4402G", "A4407G", "A4492C", "C4525T", "A4531G", "G4616A", "G4696A", "C4786T", "G4799C", "T4832G", "G4864A", "G4865C", "T4916C", "A4918C", "T4919A", "T4925C", "A4950G", "A4951G", "A5008G", "G5010T", "A5021G", "T5051A", "A5055C", "G5069C", "A5093G", "G5121A", "G5167T", "C5227T", "T5239C", "T5263C", "A5268C", "A5282C", "A5285C", "A5345G", "T5356C", "T5371C", "A5448T", "T5482C", "T5490A", "A5491G", "A5494C", "C5495G", "G5543A", "A5556C", "A5557G", "G5561C", "T5616C", "G5635A", "T5684C", "G5700A", "A5718G", "A5720G", "C5763T", "T5826C", "G5836A", "G5861A", "G5874T", "C5878T", "A5907G", "C5924T", "G5948T", "A5958G", "A6008G", "A6015G", "T6025C", "T6148C", "-6171C", "-6174T", "-6175C", "A6177G", "T6178G", "-6180A", "T6184G", "T6187A", "C6189A", "T6193C", "A6195C", "A6197-", "A6200-", "-6203T", "-6205G", "A6206C", "-6207G", "C6208G", "C6209A", "G6218-", "A6251G", "A6279T", "T6289C", "C6293A", "A6326G", "T6328C", "A6333G", "G6339C", "-6340A", "T6361C", "G6425A", "A6465G", "A6489G", "A6525C", "T6546C", "C6559T", "A6595C", "C6667T", "T6688-", "T6690-", "C6692-", "-6697A", "-6698C", "-6699A", "-6700C", "-6701T", "-6702T", "T6724C", "G6743A", "C6766T", "C6777T", "A6778G", "A6789C", "T6794C", "G6814A", "A6819-", "G6820-", "C6822A", "T6823G", "A6825C", "T6827C", "-6830T", "-6831T", "-6832C", "-6833C", "-6834C", "A6839G", "A6840C", "A6847T", "-6989G", "-6990A", "-6991C", "-6992A", "-6993C", "-6994A", "-6995G", "-6996A", "-6997T", "-6998G", "-6999A", "-7000C", "-7001A", "-7002A", "-7005G", "T7071A", "G7072C", "T7073A", "G7076C", "C7077A", "G7079C", "A7085C", "T7086A", "A7106G", "A7107G", "C7108T", "A7149C", "A7151G", "T7153G", "G7160T", "A7161G", "T7162C", "C7201T", "T7228C", "G7269A", "G7270A", "A7275G", "G7288A", "A7315G", "C7328A", "G7341C", "A7352G", "A7399G", "T7403C", "G7441A", "C7463A", "G7508C", "A7533G", "A7590C", "T7622A", "G7628A", "T7642A", "A7669G", "T7715G", "G7753A", "G7790A", "A7791G", "T7796A", "T7813C", "A7820T", "G7831A", "G7846C", "A8019C", "T8037C", "T8112C", "A8120C", "G8125A", "G8137T", "A8143G", "A8154T", "T8155G", "A8172T", "C8189T", "A8193G", "G8194A", "A8196T", "C8213T", "G8242A", "G8245A", "T8267G", "G8280T", "C8291T", "T8292G", "C8293T", "G8329A", "G8335C", "C8386A", "T8387A", "A8408G", "A8456C", "G8465A", "G8488A", "G8490A", "C8491A", "A8584T", "C8590G", "A8597-"], "INT": ["E11D", "V110A", "T119P", "A129S", "I201V", "K211R", "V281M"], "RT-p51": ["E6K", "I31L", "T35S", "T39I", "K122E", "I178M", "E207K", "K211T", "D248E", "N265K", "F346L", "K356R", "L377Q", "T403I", "E404S", "Y405I"], "RT-p66": ["E6K", "I31L", "T35S", "T39I", "K122E", "I178M", "E207K", "K211T", "D248E", "N265K", "F346L", "K356R", "L377Q", "T403I", "E404S", "Y405I", "S468P", "Q480K", "I482V", "S491A", "S534A"], "gp120": ["A3T", "W7L", "K18R", "A32S", "K35R", "N52D", "Q54R", "N105D", "-106A", "-107I", "N108R", "-109N", "-110T", "-111T", "-112N", "-113N", "-114T", "E122-", "M133V", "Q142L", "L147I", "N157D", "N159S", "N161T", "A191T", "K204R", "K212R", "K224T", "L231S", "Q247H", "I281L", "D297N", "T308M", "K312T", "S323P", "H324L", "-326P", "-328A", "K329-", "-367D", "-368D", "-370G", "-371T", "T385-", "M406N", "Y407N", "A408H", "A409P", "I411H", "N418G", "N432T", "N433G", "-436C", "K474R"], "gp41": ["L9I", "G13A", "S17G", "V69L", "K77R", "N96T", "S107T", "D109K", "D113E", "S138A", "D163S", "S165T", "I173L", "M176I", "L181F", "N239T", "V245A", "I270T", "Y284L", "Q290L", "K297R", "N298I", "L322V", "G326V", "L330C", "L344F"], "nef": ["A15E", "E38D", "R49K", "A50N", "Y81F", "A83G"], "p17": ["A15T", "M31L", "L46I", "S54A", "Q65H", "L68I", "Y87S", "V92I", "D102E", "E107D", "T115R", "K122T"], "p2": ["N9-", "-10S", "A11T"], "p24": ["I2V", "L6P", "H12Y", "I27V", "V86A", "L111P", "R154K", "T171A", "E180D", "G183N", "A204G", "P207S"], "p6": ["S51L"], "p7": ["R10K", "E21V"], "pro": ["T12A", "K14N", "V15I", "I72T", "G73C", "I85F", "R87I", "N98H"], "rev": ["K14T", "V16L", "E57D", "Q91P", "V97L", "S99G", "S103A", "T114I", "E116N"], "tat": ["K24N", "W36R", "F38L", "T39A", "T40R", "R56H", "Q60H", "S61G", "S62T"], "vif": ["R37K", "T67I", "R93N", "Y111S", "K122G", "K141R", "V142L", "K157Q", "E179K"], "vpr": ["G6E", "E21D", "E55A", "I60L", "I61L", "I84T", "V89A"], "vpu": ["A8G", "A10T", "V26A", "K38R", "G77R", "N80D"]}, "labels": {"aa": "INT: E11D, V110A, T119P, A129S, I201V, K211R, V281M; RT-p51: E6K, I31L, T35S, T39I, K122E, I178M, E207K, K211T, D248E, N265K, F346L, K356R, L377Q, T403I, E404S, Y405I; RT-p66: E6K, I31L, T35S, T39I, K122E, I178M, E207K, K211T, D248E, N265K, F346L, K356R, L377Q, T403I, E404S, Y405I, S468P, Q480K, I482V, S491A, S534A; gp120: A3T, W7L, K18R, A32S, K35R, N52D, Q54R, N105D, -106A, -107I, N108R, -109N, -110T, -111T, -112N, -113N, -114T, E122-, M133V, Q142L, L147I, N157D, N159S, N161T, A191T, K204R, K212R, K224T, L231S, Q247H, I281L, D297N, T308M, K312T, S323P, H324L, -326P, -328A, K329-, -367D, -368D, -370G, -371T, T385-, M406N, Y407N, A408H, A409P, I411H, N418G, N432T, N433G, -436C, K474R; gp41: L9I, G13A, S17G, V69L, K77R, N96T, S107T, D109K, D113E, S138A, D163S, S165T, I173L, M176I, L181F, N239T, V245A, I270T, Y284L, Q290L, K297R, N298I, L322V, G326V, L330C, L344F; nef: A15E, E38D, R49K, A50N, Y81F, A83G; p17: A15T, M31L, L46I, S54A, Q65H, L68I, Y87S, V92I, D102E, E107D, T115R, K122T; p2: N9-, -10S, A11T; p24: I2V, L6P, H12Y, I27V, V86A, L111P, R154K, T171A, E180D, G183N, A204G, P207S; p6: S51L; p7: R10K, E21V; pro: T12A, K14N, V15I, I72T, G73C, I85F, R87I, N98H; rev: K14T, V16L, E57D, Q91P, V97L, S99G, S103A, T114I, E116N; tat: K24N, W36R, F38L, T39A, T40R, R56H, Q60H, S61G, S62T; vif: R37K, T67I, R93N, Y111S, K122G, K141R, V142L, K157Q, E179K; vpr: G6E, E21D, E55A, I60L, I61L, I84T, V89A; vpu: A8G, A10T, V26A, K38R, G77R, N80D"}}}, {"name": "F1_NODE_0000023", "node_attrs": {"div": 0.07658, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G438A", "G1687A", "A1691G", "A1731G", "G2498A", "G2602T", "A3058G", "A4021G", "G5629A", "-6207C", "-6214G", "-6217A", "G6801A", "G7152A", "G7366A", "G7658C", "T7929A"], "RT-p51": ["E169D"], "RT-p66": ["E169D"], "gp120": ["R316Q"], "gp41": ["E119Q", "N129E", "L209H"], "p17": ["V35I"], "p6": ["S3N", "R18G"], "tat": ["L74I"], "vif": ["R128K"], "vpu": ["A8S"]}, "labels": {"aa": "RT-p51: E169D; RT-p66: E169D; gp120: R316Q; gp41: E119Q, N129E, L209H; p17: V35I; p6: S3N, R18G; tat: L74I; vif: R128K; vpu: A8S"}}, "children": [{"name": "FJ771006", "node_attrs": {"div": 0.10617, "accession": "FJ771006", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02BR082"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A10C", "C96T", "C207T", "A224G", "C379T", "G424A", "A425G", "C507A", "A571T", "C590T", "A595G", "T596C", "G608A", "G614T", "C684A", "G762A", "T763C", "C765T", "A820G", "A839G", "A991C", "C994T", "T1037C", "A1049C", "T1063C", "C1187T", "C1316T", "T1409C", "A1415C", "A1445C", "T1451G", "A1452G", "-1458G", "-1459T", "-1460C", "G1461-", "T1462-", "A1463-", "A1467G", "T1478C", "A1485C", "G1503A", "A1525G", "A1528T", "A1543G", "G1588A", "A1614C", "A1620G", "A1673G", "-1746C", "-1747C", "-1748T", "C1749-", "C1750-", "C1751-", "C1775A", "T1783A", "A1805G", "T1827C", "A1832G", "A1857G", "G1858A", "C1865T", "T1986C", "G2026A", "A2202C", "C2263T", "A2341G", "A2350G", "A2380G", "G2392A", "A2399C", "G2431A", "C2452T", "T2474G", "G2509A", "A2512G", "A2545G", "G2648A", "G2683A", "A2738T", "C2739A", "A2767C", "G2957A", "G2995A", "A3134C", "T3170A", "T3225A", "C3275T", "G3290A", "C3368T", "G3442C", "A3449G", "C3498T", "T3545C", "G3664C", "A3766G", "A3770G", "A3808G", "C4110T", "C4140T", "G4148C", "G4262A", "C4286T", "A4354G", "A4407G", "A4652G", "A4695G", "A4769T", "A4804T", "G4865T", "T4932G", "A4956C", "G4969A", "C5019T", "A5046G", "T5047C", "C5085A", "T5239C", "A5282C", "T5292C", "C5303T", "A5372G", "A5375G", "C5412T", "A5431G", "A5447G", "A5448C", "T5451C", "A5453T", "G5462A", "T5567G", "A5568C", "T5604G", "T5618G", "A5632T", "C5636T", "A5787T", "T5788G", "C5792A", "A5793G", "C5795A", "C5797T", "T5799G", "G5801C", "G5802C", "A5804C", "A5805C", "A5806C", "G5808T", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5839A", "C5884T", "A5947G", "G5948T", "A5955T", "A5956C", "A5958C", "A5965G", "G6020A", "A6030G", "A6043G", "A6086T", "G6130A", "A6158C", "C6165A", "-6171T", "C6172T", "A6173G", "-6174T", "-6175T", "T6178C", "-6180C", "C6181T", "A6185T", "T6187C", "A6188T", "C6190T", "A6191C", "T6193C", "A6194G", "C6196T", "A6197C", "-6198A", "-6199A", "-6201A", "-6203A", "-6205C", "-6212C", "-6213G", "-6215G", "-6216A", "C6247T", "C6278A", "C6287T", "C6293T", "A6304G", "A6324G", "T6325C", "A6326G", "A6329G", "A6330G", "A6333G", "A6335G", "T6337C", "G6339A", "-6340T", "A6349G", "A6394C", "G6466A", "C6469T", "A6489C", "A6581G", "A6587C", "A6599C", "T6602A", "G6611A", "C6631T", "-6689A", "-6691A", "-6693A", "T6763C", "A6812C", "G6820A", "-6821T", "C6822T", "T6823A", "C6824T", "-6833A", "-6834A", "A6844C", "A6849C", "C6856A", "-6989G", "-6990A", "-6991C", 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-115Q, -116N, -117S, -118T, -119L, -120R, -121E, -123P, Q142K, H145Y, L147F, N157S, N159G, S160T, N161-, K212T, I243V, I249L, S250T, A253T, D294A, K320Q, S323L, H324Y, -328N, K332T, N334K, -367V, -368S, -384D, R391Q, A412E, N432K, N435D, -436T, T437E, T439I, N446D, K448R, K472R; gp41: L7V, E49K, M54L, N96T, D109E, E129Q, V235G, N239D, D272N, Q294R, K297R, I319L, A325I, R342I; nef: I16V, Q35R, R49S, N51T, Y81F, H116N, N126C, F139L, K155R, E158A, R188S, I194V, F202Y; p17: A15V, R30K, Y79F, Y87C, E93D, D102E, Q117K; p2: N9K; p24: V11T, H12Y, K30R, H87P, A88V, L111P, S225G; p6: D32E, L35Q, *50Q; p7: M1V, K7Q, V13I, K20R, E21V, K26R, R41K, T50P, R52G; pro: I3V, L10P, T12A, K20R, L63P; rev: T10A, Y18A, A54E, E57G, S62A, D88N, G90E, T93A, P100S, I102V; tat: T19A, K24S, Y26F, R29Q, I64S, P84Q; vif: R37G, E61D, H73L, R93S, S116A, I124L, I154A, Q167K; vpr: I60L, I63T; vpu: L4W, I9L, A10V, A61V, D78N, N80D"}}}, {"name": "F1_NODE_0000024", "node_attrs": {"div": 0.07829, "clade_membership": 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RT-p51: T39M; RT-p66: T39M; gp120: -106L, H280S; gp41: I24M, Q108Y; nef: D174E, F202Y, Q204K; p17: R91K; p2: -10T; vpu: Y3D"}}, "children": [{"name": "F1_NODE_0000026", "node_attrs": {"div": 0.08256000000000001, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A595G", "A810G", "T2464G", "A3985G", "G4969A", "T5614G", "G6023A", "A6177C", "-6198A", "-6204C", "-6205C", "A6279T", "-6990A", "-6991C", "-6992A", "-6993C", "-6994A", "-6997A", "-7000C", "-7001A", "-7002A", "-7005A", "T7690A", "C8648T", "G8909A", "A8916C", "A8928C", "A8967C", "A8971C", "G8974T", "A8991G", "-9009A", "G9033-", "T9040-", "C9041-", "A9042-", "C9068T"], "gp120": ["V57N", "-107N", "Q142M", "-384D"], "p17": ["Y87F"], "p24": ["I27V"]}, "labels": {"aa": "gp120: V57N, -107N, Q142M, -384D; p17: Y87F; p24: I27V"}}, "children": [{"name": "F1_NODE_0000027", "node_attrs": {"div": 0.08760000000000001, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A576G", "G869A", "G1278A", "G1279A", "A1339G", "A1687G", "G1709A", "T1783A", "G1841A", "G2038A", "A2498G", "A2764G", "C3275T", "C3355T", "G3605A", "A3808C", "G3984A", "A4130C", "G4673A", "A4993C", "C5444A", "C5544A", "C5636T", "-5861G", "-5862C", "G5972A", "T6024A", "A6030T", "A6188G", "-6203G", "C6209A", "A6324G", "T6331C", "A6333G", "-6340C", "G6478A", "G6936A", "-6995A", "-6999T", "C7089A", "C7603T", "G7628A", "G7660A", "A7921T", "G7992A", "C8169T", "G8424A", "A8494C", "C8514T", "T8606C", "A8882G", "G8915T", "A8918T", "G8935T", "A8936G", "A8954G", "G9032-", "A9034-", "G9035-", "T9036-", "G9037-", "G9038-", "C9039-", "C9043-"], "INT": ["E11D", "T119P"], "RT-p51": ["D123E"], "RT-p66": ["D123E", "G504R"], "gp120": ["-3A", "V40I", "E59V", "-109T"], "gp41": ["M54L", "L206F", "G230D", "T289V"], "nef": ["R49S", "N51T"], "p17": ["T81A"], "p24": ["G183N", "K203R"], "p6": ["N3S", "L35Q"], "pro": ["V15I"], "tat": ["T23N"], "vif": ["M29I", "Q136P"]}, "labels": {"aa": "INT: E11D, T119P; RT-p51: D123E; RT-p66: D123E, G504R; gp120: -3A, V40I, E59V, -109T; gp41: M54L, L206F, G230D, T289V; nef: R49S, N51T; p17: T81A; p24: G183N, K203R; p6: N3S, L35Q; pro: V15I; tat: T23N; vif: M29I, Q136P"}}, "children": [{"name": "MG365762", "node_attrs": {"div": 0.11614000000000001, "accession": "MG365762", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2012.0}, "Strain_name": {"value": "12BRRJP05"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A46G", "T153C", "A263T", "G290A", "-304A", "A359G", "G378T", "T422C", "G524A", "C540T", "A541C", "A562G", "C583T", "G595T", "A640G", "A678G", "C765T", "G806A", "G809A", "G818A", "T988C", "T992G", "A1002T", "G1019A", "T1063C", "G1101A", "C1103T", "C1229T", "G1313A", "C1342G", "A1361T", "A1415C", "T1427A", "G1461A", "A1464C", "A1493G", "C1541T", "G1588A", "C1656A", "A1657G", "A1673G", "A1719T", "G1731A", "A1840G", "G1845A", "C1914A", "T1978A", "C1981T", "A1982G", "C2047T", "T2211A", "A2212T", "C2263T", 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["G16E", "P39Q", "D60E", "I62V"], "rev": ["T10K", "E11K", "K14E", "I52V", "I102T", "H107R"], "tat": ["T39A", "R56Q", "R57K", "Q60R", "D67N", "L68P", "P81Q"], "vif": ["V51I", "E61D", "D113N", "K122N", "K158R", "Q167K"], "vpr": ["N28H", "I63M", "I84T"], "vpu": ["D3N", "S8G", "A10I", "R37N"]}, "labels": {"aa": "INT: K14R, E48K, G70E, V88I, T112I, V150I, T206S, E256D; RT-p51: M39N, K82R, E207A, G213E, G262E, V276T, A327V, I375V, S379C, W410*; RT-p66: M39N, K82R, E207A, G213E, G262E, V276T, A327V, I375V, S379C, W410*, K452L, G453R, A485T, S491L, E492K, K512Q, G543R; gp120: E4D, T104S, N105D, L106F, N108T, -110T, -111N, -112D, -113D, -114Q, -115D, -116S, -117A, -118L, -119R, -120E, -123L, M142L, H145R, N157G, -162S, D202E, K204N, K224R, E240G, I249L, A253V, E262Q, S280-, I281-, -282Q, -283L, G307R, T308S, E315D, V317I, A319T, K322G, P326K, K332I, N334S, S335P, S336P, M345T, G361N, -367A, -368L, -370D, -371T, -372I, -373L, -374N, T385N, A409N, A412E, N414K, N418I, N433D, -436N, K472R; gp41: Y108H, D109S, E129Q, Q147K, A151E, K172R, D247E, Y284H, Q290L, K297R, N305D, V329I; nef: A15D, E28K, S46N, A83G, Y102H, K104Q, E108D, Q170L, E176D, R178K, K182I, L191F, R192H, I194T, R198V; p1: H9S; p17: A15S, Q69S, K76R, A83V, D102G, T115A; p2: T12-, V13I, M14L; p24: H12Y, V86A, H87Q, I91F, M96I, L111P, V124I, A204G, S225G; p6: S14C, G18R; p7: R41K; pro: G16E, P39Q, D60E, I62V; rev: T10K, E11K, K14E, I52V, I102T, H107R; tat: T39A, R56Q, R57K, Q60R, D67N, L68P, P81Q; vif: V51I, E61D, D113N, K122N, K158R, Q167K; vpr: N28H, I63M, I84T; vpu: D3N, S8G, A10I, R37N"}}}, {"name": "MG365766", "node_attrs": {"div": 0.13807000000000003, "accession": "MG365766", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11BRRJPR69"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T23C", "A161C", "C200T", "T228A", "G273A", "C274G", "-280C", "C281A", "C284-", "G289A", "T291A", "G292A", "C300T", "A301T", "A317G", 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"T3013C", "A3028G", "A3071G", "A3080G", "G3094A", "T3112C", "T3170G", "G3217A", "C3224G", "A3229G", "A3258G", "T3292C", "G3344A", "G3425A", "T3431G", "G3442A", "A3451G", "G3477A", "C3499T", "C3511T", "A3535C", "A3538C", "G3544T", "T3545C", "A3553G", "A3607G", "A3667G", "A3675G", "A3684G", "C3688T", "A3703G", "A3739G", "G3775A", "G3785A", "T3793C", "A3825G", "G3866A", "A3877G", "G3884A", "G3914A", "G3952A", "T3976C", "G3983A", "G4019A", "G4021A", "C4042T", "G4046A", "C4079T", "A4093C", "C4140T", "G4145A", "G4176A", "C4181A", "G4193A", "A4264G", "A4268G", "G4272A", "A4273G", "T4288G", "C4321T", "G4388T", "T4428C", "A4555G", "G4573A", "C4674T", "G4677A", "A4688G", "G4696A", "T4702C", "C4754T", "C4761T", "A4775G", "G4799A", "T4832C", "T4914C", "T4932G", "A4937C", "A4956T", "C4965T", "A4970C", "G4982A", "A5000C", "A5058C", "G5066A", "T5073C", "G5121A", "A5159G", "G5167A", "A5236G", "C5237T", "A5247C", "T5357A", "A5366G", "T5371C", "G5382A", "C5383A", "A5431G", "A5448T", "C5492T", "A5493G", "C5495A", "G5496A", "G5538A", "A5545C", "A5547C", "A5556C", "C5563A", "T5567C", "A5601T", "T5611C", "T5620G", "A5640C", "A5644G", "G5662A", "A5689C", "G5706A", "A5709T", "G5730C", "A5738T", "C5916A", "G5948T", "A5958G", "A5959G", "T5980C", "C5989T", "C5998T", "G6020A", "T6134C", "A6158C", "T6160C", "T6163-", "A6164-", "C6165-", "T6166-", "A6167-", "A6168-", "T6169-", "G6170-", "C6172-", "A6173-", "A6176-", "C6177-", "T6178-", "A6179-", "C6181T", "A6192C", "A6194G", "A6195G", "A6198C", "-6201A", "C6202T", "T6210C", "G6211A", "A6212C", "A6213T", "G6214C", "-6215A", "-6216A", "A6219C", "G6220A", "C6221A", "G6224-", "G6225-", "G6226-", "G6227-", "C6228-", "A6229-", "A6230-", "T6231-", "A6232-", "C6233-", "A6234-", "A6235-", "A6236-", "A6237-", "C6238-", "T6239-", "G6240-", "T6241-", "T6242-", "C6243-", "T6244-", "T6271C", "G6274A", "C6278A", "T6285A", "T6301C", "A6309G", "A6330C", "T6337C", "C6343T", "A6394G", "T6436A", "T6457G", "A6462C", "A6489G", "G6490T", "C6496T", "A6500T", "G6532A", 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"L377V", "K388R", "V417I"], "RT-p66": ["M39R", "M41I", "G51R", "S68G", "E138K", "D169E", "T173A", "G231R", "P294T", "I326V", "I329V", "S359A", "L377V", "K388R", "V417I", "G444R", "S446A", "R461K", "Q480H", "Q483H", "K527R", "K530R"], "gp120": ["T21N", "A32S", "K35R", "V56I", "N102H", "N107K", "N108A", "E122-", "G124-", "A125-", "I126-", "Q127-", "N128-", "C129-", "S130-", "V144E", "D152G"], "gp41": ["M4I", "A6V", "N42S", "K77Q", "L91T", "P98R", "D109N", "E110A", "D113E", "Q119E", "N126R", "E129G", "R133Q", "E136T", "E137D", "N140I", "E143D", "D163N", "S165T", "A189T", "L191I", "V197G", "P213S", "G225E", "D247N", "R276K", "R277W", "Y284F", "V289L", "S293G", "Q294R", "A321V", "N331H"], "nef": ["S9W", "I10M", "V11A", "P14S", "A15T", "I16V", "M20I", "E28T", "L87I", "Y135F", "D149S", "N161D", "N162K", "E174D", "R178G", "K184V", "R188H", "I194M", "R198L", "Y202F"], "p1": ["I5V"], "p17": ["A15R", "R30K", "M31L", "L34I", "I35V", "A37E", "D47N", "P48S", "S54A", "K59Q", "Q65H", "L68I", "F87C", "K91R", "V92I", "D102E", "Q116K", "Q130H"], "p2": ["N9H", "A11-"], "p24": ["S14A", "S16T", "V26A", "S120G", "G208A", "T210S"], "p6": ["L1P", "Y36I", "P49H", "S51L"], "p7": ["K3R", "S4N", "Q9P", "V13I", "I24L"], "pro": ["H69Y", "K70R", "I72T", "G86R"], "rev": ["S8N", "T10D", "E11A", "K14T", "Y18H", "P31L", "A54E", "E57Q", "S62A", "G65E", "E95V", "H107P", "E111G"], "tat": ["L3I", "T19A", "K24N", "T39M", "T40K", "Q60H", "Q63K", "I64T"], "vif": ["H30Y", "V31I", "R37K", "F39S", "Y110H", "S116A", "E117D", "I124L", "H127Y", "K128N", "K158Q", "E179K"], "vpr": ["G6E", "T19A", "H45Y", "N48T", "V89A", "A93N"], "vpu": ["S2P", "L5V", "A10V", "I13V", "A19T", "I28L", "R41S", "K44I"]}, "labels": {"aa": "INT: G4R, N17S, V31I, V37I, G47R, G70K, G82R, A91T, T122I, A124T, G134D, Q136K, G140R, I165V, R166K, H171Q, A205S, I218T; RT-p51: M39R, M41I, G51R, S68G, E138K, D169E, T173A, G231R, P294T, I326V, I329V, S359A, L377V, K388R, V417I; RT-p66: M39R, M41I, G51R, S68G, E138K, D169E, T173A, G231R, P294T, I326V, I329V, S359A, L377V, K388R, V417I, G444R, S446A, R461K, Q480H, Q483H, K527R, K530R; gp120: T21N, A32S, K35R, V56I, N102H, N107K, N108A, E122-, G124-, A125-, I126-, Q127-, N128-, C129-, S130-, V144E, D152G; gp41: M4I, A6V, N42S, K77Q, L91T, P98R, D109N, E110A, D113E, Q119E, N126R, E129G, R133Q, E136T, E137D, N140I, E143D, D163N, S165T, A189T, L191I, V197G, P213S, G225E, D247N, R276K, R277W, Y284F, V289L, S293G, Q294R, A321V, N331H; nef: S9W, I10M, V11A, P14S, A15T, I16V, M20I, E28T, L87I, Y135F, D149S, N161D, N162K, E174D, R178G, K184V, R188H, I194M, R198L, Y202F; p1: I5V; p17: A15R, R30K, M31L, L34I, I35V, A37E, D47N, P48S, S54A, K59Q, Q65H, L68I, F87C, K91R, V92I, D102E, Q116K, Q130H; p2: N9H, A11-; p24: S14A, S16T, V26A, S120G, G208A, T210S; p6: L1P, Y36I, P49H, S51L; p7: K3R, S4N, Q9P, V13I, I24L; pro: H69Y, K70R, I72T, G86R; rev: S8N, T10D, E11A, K14T, Y18H, P31L, A54E, E57Q, S62A, G65E, E95V, H107P, E111G; tat: L3I, T19A, K24N, T39M, T40K, Q60H, Q63K, I64T; vif: H30Y, V31I, R37K, F39S, Y110H, S116A, E117D, I124L, H127Y, K128N, K158Q, E179K; vpr: G6E, T19A, H45Y, N48T, V89A, A93N; vpu: S2P, L5V, A10V, I13V, A19T, I28L, R41S, K44I"}}}]}, {"name": "F1_NODE_0000028", "node_attrs": {"div": 0.09023, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A256-", "-280G", "G404A", "G424A", "A426C", "G508A", "G585A", "T586C", "G641C", "A678G", "T748C", "C767T", "A959G", "C1060A", "G1498A", "G1588A", "C1730T", "A1835G", "A1849G", "C2476T", "T2499C", "G2524A", "C2527T", "T2602G", "C2605T", "C2613A", "A2615C", "A3088G", "G3100C", "A3241T", "C3857T", "C4321A", "A4407G", "C4444T", "A4781G", "G5179A", "A5225G", "T5384C", "A5699G", "C5763T", "A5863-", "G6029A", "-6171C", "C6183A", "-6203A", "-6216A", "T6242A", "C6278A", "T6337-", "G6339-", "-6689A", "-6691A", "C6745T", "T6794A", "A6812G", "G6814A", "T6829C", "-6833C", "-6995G", "-6996A", "-6999C", "C7064A", "A7107G", "A7148C", "T7150G", "A7161G", "C7463A", "A7669G", "T8205C", "C8460A", "A8540G", "C8590G", "C8595G", "A8886C", "C8913T", "A8918G", "C8921T", "A8922G", "A8924G", "A9007G", "-9014T", "A9019T", "-9041A", "-9042G"], "INT": ["K211R"], "RT-p51": ["V135T", "D169E", "T173K", "K174Q"], "RT-p66": ["V135T", "D169E", "T173K", "K174Q"], "gp120": ["L106A", "-112T", "S130T", "N159E", "S160T", "N161-", "A291T", "L314I", "K320E", "N432Q", "-436T"], "gp41": ["M4I", "I301T"], "nef": ["A83G", "L85V", "K182Q", "I194V"], "p17": ["R30K", "M31L", "V84T", "T115A"], "p2": ["T12V"], "p24": ["L6P"], "p7": ["R11K", "R41K"], "pro": ["I13V"], "tat": ["L3P"], "vpr": ["H77Q"], "vpu": ["K31R"]}, "labels": {"aa": "INT: K211R; RT-p51: V135T, D169E, T173K, K174Q; RT-p66: V135T, D169E, T173K, K174Q; gp120: L106A, -112T, S130T, N159E, S160T, N161-, A291T, L314I, K320E, N432Q, -436T; gp41: M4I, I301T; nef: A83G, L85V, K182Q, I194V; p17: R30K, M31L, V84T, T115A; p2: T12V; p24: L6P; p7: R11K, R41K; pro: I13V; tat: L3P; vpr: H77Q; vpu: K31R"}}, "children": [{"name": "MG365764", "node_attrs": {"div": 0.12151, "accession": "MG365764", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2012.0}, "Strain_name": {"value": "12BRRJPR51"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A14G", "C151A", "A152-", "C281-", "A303T", "A418G", "A425G", "C435T", "G455A", "T495C", "C503A", "C525T", "A571T", "G595T", "A604G", "G650A", "C662T", "C681A", "A735G", "C765T", "T861G", "G989A", "A998G", "A1060G", "C1118T", "G1256A", "G1388A", "A1415T", "C1439A", "A1448G", "A1464C", "A1525G", "A1526G", "A1536C", "C1541A", "A1545C", "C1556A", "A1589G", "C1656A", "G1691A", "G1697A", "G1720T", "A1733G", "T1752C", "T1783A", "A1839G", "T1864C", "C1903A", "A1906G", "C1913T", "A1966G", "T1986A", "T1999C", "T2013C", "G2038T", "C2044T", "G2173A", "A2212G", "C2485T", "C2500A", "C2684A", "A2713G", "A2716C", "A2743C", "A2755G", "G2837A", "G2914A", "A2925G", "G3015A", "A3079G", "C3095G", "G3221T", "C3224T", "G3250A", "A3251C", "A3264G", "G3307C", "C3415T", "G3442A", "C3492T", "T3517C", "C3567T", "G3643A", "T3644A", "A3766G", "A3808C", "T3820C", "G3834A", "G3859A", "A3877G", "A3913G", "G3925A", "T3962C", "A4076C", "T4085C", "A4112G", "C4147T", "G4150A", "C4247T", "G4255A", "A4376G", "G4622A", "A4642G", "A4695G", "G4727A", "G4735A", "G4737A", "G4864A", "C4890T", "C4902T", "T4914C", "A4937C", "A4964G", "A4970G", "A4993C", "A5058C", "A5065G", "G5128A", "G5167T", "G5185A", "T5203C", "G5226C", "T5313C", "T5336G", "T5339C", "T5356C", "G5359C", "G5382T", "T5391C", "T5479C", "C5481A", "A5548C", "A5557G", "G5565A", "C5578A", "T5602C", "G5619A", "A5632T", "G5647A", "T5684C", "A5738G", "A5806G", "G5839A", "A5845G", "A5866C", "A5957C", "T5986C", "T6010C", "A6023T", "A6031T", "A6045G", "T6134C", "T6155C", "A6167G", "A6168C", "-6174A", "-6175T", "A6179G", "-6180C", "A6186C", "T6187C", "A6195G", "-6201A", "C6204G", "-6215G", "G6220T", "A6234T", "T6252C", "A6254G", "C6255A", "G6277A", "T6285A", "T6301C", "A6311C", "A6327G", "A6330G", "A6335G", "G6336A", "-6337A", "-6339C", "-6340A", "T6403A", "A6448G", "A6464G", "A6471C", "G6475A", "C6501T", "G6532A", "G6566T", "A6568G", "A6576G", "A6578G", "G6611A", "C6618A", "T6655C", "C6667T", "A6685G", "-6693G", "T6694G", "T6760C", "G6767A", "C6777A", "C6779A", "G6797C", "A6799C", "-6821A", "C6822A", "T6823G", "-6834A", "C6925T", "-6986A", "-6987A", "-6988T", "-6989A", "-6998T", "A7032G", "G7065A", "A7097C", "A7100G", "T7105C", "T7114C", "A7152G", "T7162G", "A7234G", "G7269A", "A7275G", "A7281C", "G7375A", "A7428G", "G7552A", "C7553A", "T7609C", "T7624C", "T7627G", "G7633A", "T7636A", "C7678T", "G7688C", "G7701A", "A7706C", "A7710G", "G7714A", "G7717A", "C7742A", "A7744G", "A7747C", "C7755A", "G7759T", "A7947G", "G7956A", "A7995G", "C8005A", "C8044A", "G8122A", "G8134A", "T8235G", "G8243T", "A8294C", "G8323T", "G8329A", "A8341G", "T8348G", "A8352C", "A8353G", "C8415A", "T8451C", "A8469G", "A8472T", "A8537C", "G8666C", "C8684T", "T8759G", "G8787A", "A8851T", "A8882G", "C8907T", "G8917A", "A8954G", "-9033G", "-9040G", "C9075T"], "INT": ["E11D", "R20K", "M50I", "I101L", "I113V", "I201V", "G283S"], "RT-p51": ["D123E", "Q197K", "E207D", "D248N", "K277R", "R307K", "Q334E", "A376S", "T386P", "K390R", "E404D"], "RT-p66": ["D123E", "Q197K", "E207D", "D248N", "K277R", "R307K", "Q334E", "A376S", "T386P", "K390R", "E404D", "A466V", "S491L", "L517I"], "gp120": ["-3D", "E4N", "N5-", "K35Q", "N57F", "E59N", "N64S", "N105A", "N108T", "-109A", "-110N", "-111T", "-113N", "-114S", "-115N", "-116S", "-117N", "-118S", "-119T", "-120L", "-121K", "-123D", "Q127L", "M133T", "T134D", "V144E", "I153L", "D183E", "K204E", "N206T", "T216I", "A238S", "E240G", "D241G", "I242V", "A253T", "T255N", "S280R", "T292E", "G293R", "D294I", "V305I", "T308E", "Q309K", "E315H", "K322R", "S323K", "P326H", "D365-", "T366-", "N369-", "-378N", "-379N", "-380T", "-381E", "-382S", "-383N", "K393R", "R404K", "I415L", "T416A", "N418S", "N433S", "N435G", "T437S", "K474R", "Q476P"], "gp41": ["M24I", "N42S", "L84I", "Y108Q", "D109E", "E129Q", "R133K", "I135L", "E136G", "Q147K", "E148D", "A151E", "L152F", "E215G", "R218K", "K231R", "D247E", "V311G", "G314W", "N331H", "L340F"], "nef": ["K4R", "P25T", "I43V", "T44S", "E65D", "E108D", "F139L", "D149N", "Q170L", "R192Q"], "p1": ["H9N"], "p17": ["K28R", "S54P", "R58Q", "Y79F", "Q90R", "Q116K"], "p2": ["S5R", "V13L"], "p24": ["I2V", "H12Y", "S44A", "T110S", "S225G"], "p6": ["S14I", "S24P", "L35Q"], "p7": ["K20R", "I24L", "N27H"], "pro": ["K14R", "D35E", "I36M", "P39S", "L63H", "I72T"], "rev": ["T10A", "E11D", "R17K", "R53S", "G92R", "T93A", "G96R"], "tat": ["E2D", "Y35Q", "T58P", "S61G", "L68I", "N80D", "G83S"], "vif": ["N19S", "R37G", "R50K", "V51I", "R93K", "Y110H", "E117D", "Q136P", "K158Q", "K160R", "R181K"], "vpr": ["E21D", "S41A", "I70T", "I84T", "R85P", "A93S", "S96P"], "vpu": ["I9L", "V14I", "V26A", "K44R", "M71V", "D78N", "N80D"]}, "labels": {"aa": "INT: E11D, R20K, M50I, I101L, I113V, I201V, G283S; RT-p51: D123E, Q197K, E207D, D248N, K277R, R307K, Q334E, A376S, T386P, K390R, E404D; RT-p66: D123E, Q197K, E207D, D248N, K277R, R307K, Q334E, A376S, T386P, K390R, E404D, A466V, S491L, L517I; gp120: -3D, E4N, N5-, K35Q, N57F, E59N, N64S, N105A, N108T, -109A, -110N, -111T, -113N, -114S, -115N, -116S, -117N, -118S, -119T, -120L, -121K, -123D, Q127L, M133T, T134D, V144E, I153L, D183E, K204E, N206T, T216I, A238S, E240G, D241G, I242V, A253T, T255N, S280R, T292E, G293R, D294I, V305I, T308E, Q309K, E315H, K322R, S323K, P326H, D365-, T366-, N369-, -378N, -379N, -380T, -381E, -382S, -383N, K393R, R404K, I415L, T416A, N418S, N433S, N435G, T437S, K474R, Q476P; gp41: M24I, N42S, L84I, Y108Q, D109E, E129Q, R133K, I135L, E136G, Q147K, E148D, A151E, L152F, E215G, R218K, K231R, D247E, V311G, G314W, N331H, L340F; nef: K4R, P25T, I43V, T44S, E65D, E108D, F139L, D149N, Q170L, R192Q; p1: H9N; p17: K28R, S54P, R58Q, Y79F, Q90R, Q116K; p2: S5R, V13L; p24: I2V, H12Y, S44A, T110S, S225G; p6: S14I, S24P, L35Q; p7: K20R, I24L, N27H; pro: K14R, D35E, I36M, P39S, L63H, I72T; rev: T10A, E11D, R17K, R53S, G92R, T93A, G96R; tat: E2D, Y35Q, T58P, S61G, L68I, N80D, G83S; vif: N19S, R37G, R50K, V51I, R93K, Y110H, E117D, Q136P, K158Q, K160R, R181K; vpr: E21D, S41A, I70T, I84T, R85P, A93S, S96P; vpu: I9L, V14I, V26A, K44R, M71V, D78N, N80D"}}}, {"name": "MG365767", "node_attrs": {"div": 0.12624000000000002, "accession": "MG365767", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2008.0}, "Strain_name": {"value": "08BRRJ35"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A10G", "T23C", "A46G", "G47A", "T95C", "C96T", "G162T", "T201C", "G265A", "A278G", "-304A", "-305A", "A317G", "A369G", "G378A", "C379G", "G407A", "C426T", "G428A", "C435A", "A438G", "C471G", "G474A", "T485G", "C486T", "C507A", "A510C", "A512G", "A518G", "T534G", "G557A", "A569G", "T575C", "G608A", "G609A", "G620A", "C623T", "C626T", "C645A", "A656G", "A664G", "C669A", "G677A", "A680T", "G689A", "A697G", "A700C", "-704A", "-705A", "-706A", "-707C", "-708A", "-709G", "-710C", "-711A", "-712G", "-713T", "-714C", "-715A", "T718C", "T746C", "C747G", "T749C", "A755G", "G762A", "T771C", "T774A", "G818A", "T902C", "C1013T", "A1020C", "A1073G", "A1089G", "G1173A", "C1220T", "C1244T", "T1253A", "G1277A", "G1278A", "G1279A", "C1360G", "A1361C", "T1385C", "G1404A", "T1421C", "A1454C", "A1474G", "T1502A", "T1517C", "A1592G", "A1642G", "C1670T", "T1676C", "G1773A", "A1774C", "C1825A", "C1826A", "A1979G", "C1981G", "G2027A", "C2105T", "G2131A", "A2140G", "G2273A", "A2293G", "T2365G", "A2380G", "T2386C", "G2447A", "G2464C", "C2503T", "A2518G", "G2539A", "T2542C", "A2548G", "C2575T", "T2579A", "C2584T", "C2626A", "C2638T", "A2693G", "G2704A", "G2705A", "A2734G", "T2737G", "C2749T", "G2818A", "G2842A", "A2918C", "G2921A", "G3019A", "G3043A", "A3046G", "G3058A", "A3091G", "A3142G", "A3196G", "G3221A", "A3280G", "C3500A", "A3514G", "C3649T", "G3680A", "G3685A", "A3838C", "G3869A", "G3989A", "C3995A", "C4042T", "A4060G", "A4063G", "A4066T", "C4075T", "C4079T", "T4153C", "G4186A", "C4207T", "T4216C", "G4246A", "A4354G", "T4428C", "G4549A", "A4570G", "T4701G", "G4723A", "T4820G", "G4853A", "G4856A", "G4862A", "G4949A", "C5006T", "C5085A", "A5086G", "G5167A", "A5236G", "C5251A", "T5294C", "C5303T", "A5312G", "T5336A", "A5360G", "T5371G", "A5372G", "G5427A", "A5431G", "C5444A", "T5451C", "C5461A", "G5462A", "A5480G", "G5543A", "T5611C", "T5616C", "A5652T", "C5653A", "C5663T", "G5692A", "A5842C", "A5867G", "A5965G", "T6024A", "A6030C", "T6034G", "A6038G", "C6039A", "A6092G", "A6159G", "T6160G", "T6166C", "C6172T", "-6174C", "-6175C", "T6178C", "-6180A", "C6181T", "A6183G", "T6184C", "C6189G", "A6192C", "A6194G", "C6196G", "T6199C", "-6201G", "C6202A", "C6205A", "C6207A", "C6208T", "C6209A", "T6210C", "G6211C", "A6213T", "-6215A", "A6217G", "G6220A", "C6221G", "C6222A", "G6224C", "G6225C", "G6226A", "C6228G", "A6229G", "G6274A", "A6303G", "A6304C", "T6325C", "T6331A", "A6333C", "T6334A", "A6335-", "G6336-", "A6338-", "C6353A", "A6354G", "C6364T", "A6430G", "T6457G", "C6477T", "C6483T", "A6529G", "G6550A", "G6573A", "A6589T", "C6619T", "A6630G", "C6692T", "-6693C", "A6695T", "G6725A", "G6754A", "C6758T", "C6766T", "C6792A", "G6797A", "C6800G", "C6810A", "G6819A", "-6821T", "-6834C", "A6839G", "A6840C", "A6854G", "A6855C", "C6856T", "C6874T", "A6881G", "A6910G", "-6989G", "-6998A", "C7014T", "A7057G", "C7080T", "C7089A", "C7108A", "A7129C", "G7132A", "T7153C", "A7157G", "T7162A", "C7164A", "A7190G", "A7197G", "G7214A", "A7255G", "A7290G", "G7291A", "A7366G", "A7411G", "T7432C", "T7462C", "C7486T", "G7508A", "C7596T", "A7617G", "C7625T", "G7628A", "G7633C", "T7642C", "C7658G", "G7688A", "A7690C", "C7801T", "A7819G", "T7876G", "A7972C", "G8001A", "A8002G", "C8009A", "G8125C", "A8184G", "A8216G", "A8236G", "C8296T", "C8320T", "G8323A", "G8335A", "G8402A", "G8407A", "C8416T", "T8486A", "C8504T", "A8522G", "C8552T", "A8701T", "T8740C", "C8756T", "T8786G", "A8804G", "C8873T", "G8905A", "G8915T", "T8923C", "A8934C", "G8935T", "A8936G", "C8966T", "C8967T", "C8992T", "-9040A"], "INT": ["V32I", "V72I", "L74M", "I218T"], "RT-p51": ["P4S", "M39I", "V60I", "V118I", "C162S", "D177E", "T200A", "E204K", "F214L", "K275Q", "V276I", "A376T"], "RT-p66": ["P4S", "M39I", "V60I", "V118I", "C162S", "D177E", "T200A", "E204K", "F214L", "K275Q", "V276I", "A376T", "L469I", "E529K"], "gp120": ["N5D", "E59T", "N60K", "T62E", "I80V", "N102R", "N107T", "-109R", "-110T", "-111N", "-119M", "-120K", "-121E", "-123P", "K150S", "H167S", "N201K", "T208M", "P210L", "R245S", "H259R", "I281L", "H302Y", "T308A", "T313K", "E315K", "Q316E", "A319E", "-328A", "K329-", "N334A", "I343V", "-367E", "-368T", "T387I", "A409V", "A412E", "N418R", "N435D", "T437K", "N446D", "K448R", "E454K", "K472R", "K479R"], "gp41": ["V69I", "P98L", "N105S", "D109K", "E110D", "Q119E", "E129N", "E223D", "R233K", "Q294R", "N305D"], "nef": ["M20I", "R22Q", "P25L", "Y120F", "I133T", "R188H", "L191F", "V194A", "R198L"], "p1": ["K4R"], "p17": ["K12E", "A15R", "L34I", "I35V", "L46V", "D47N", "R58K", "K59Q", "I61M", "S67A", "F87C", "V92I", "L104I", "K110R", "Q112K", "D121G", "K122T", "-124N", "-125S", "-126S", "-127Q", "V128A"], "p2": ["V13-"], "p24": ["P6A", "V11I", "S14P", "L15I", "T110N", "S120G", "V148I", "G183N", "T210S"], "p6": ["D32T", "P49Q"], "p7": ["K3R"], "pro": ["L10I", "N61E", "V77I"], "rev": ["I52V", "A54E", "T93P"], "tat": ["T19A", "T23N", "R29K", "Y35C", "R56H"], "vif": ["F39V", "S46N", "D78E", "W89*", "Q167R"], "vpr": ["S41G", "I70V", "V89G"], "vpu": ["S2P", "L16I", "A19V", "E29K", "I79L"]}, "labels": {"aa": "INT: V32I, V72I, L74M, I218T; RT-p51: P4S, M39I, V60I, V118I, C162S, D177E, T200A, E204K, F214L, K275Q, V276I, A376T; RT-p66: P4S, M39I, V60I, V118I, C162S, D177E, T200A, E204K, F214L, K275Q, V276I, A376T, L469I, E529K; gp120: N5D, E59T, N60K, T62E, I80V, N102R, N107T, -109R, -110T, -111N, -119M, -120K, -121E, -123P, K150S, H167S, N201K, T208M, P210L, R245S, H259R, I281L, H302Y, T308A, T313K, E315K, Q316E, A319E, -328A, K329-, N334A, I343V, -367E, -368T, T387I, A409V, A412E, N418R, N435D, T437K, N446D, K448R, E454K, K472R, K479R; gp41: V69I, P98L, N105S, D109K, E110D, Q119E, E129N, E223D, R233K, Q294R, N305D; nef: M20I, R22Q, P25L, Y120F, I133T, R188H, L191F, V194A, R198L; p1: K4R; p17: K12E, A15R, L34I, I35V, L46V, D47N, R58K, K59Q, I61M, S67A, F87C, V92I, L104I, K110R, Q112K, D121G, K122T, -124N, -125S, -126S, -127Q, V128A; p2: V13-; p24: P6A, V11I, S14P, L15I, T110N, S120G, V148I, G183N, T210S; p6: D32T, P49Q; p7: K3R; pro: L10I, N61E, V77I; rev: I52V, A54E, T93P; tat: T19A, T23N, R29K, Y35C, R56H; vif: F39V, S46N, D78E, W89*, Q167R; vpr: S41G, I70V, V89G; vpu: S2P, L16I, A19V, E29K, I79L"}}}]}]}, {"name": "F1_NODE_0000029", "node_attrs": {"div": 0.08394, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T479A", "C525T", "T560C", "G579A", "G989A", "C1004T", "A1007C", "G1019A", "G1404A", "A1733G", "G2984A", "A3247C", "A3264G", "C3275T", "C3511T", "G3989A", "C4162T", "G4255A", "A4303C", "A4695G", "T4820C", "G5121A", "G5269A", "T5964C", "G6050A", "G6133A", "A6179G", "A6188G", "-6215G", "-6216A", "C6353A", "G6466T", "A6538C", "-6691A", "-6693C", "T7322G", "T7642G", "C7801T", "G7868A", "A7995G", "C8595G", "T8759G", "C8907T"], "INT": ["V72I"], "RT-p51": ["V135T", "K390R"], "RT-p66": ["V135T", "A297T", "K390R"], "gp120": ["V37A", "D66N", "H167N"], "gp41": ["D113E", "A189T", "K231R"], "nef": ["L85V", "F139L"], "p17": ["V82I", "D102E"], "p24": ["H87Q", "M96I"], "rev": ["T93A"], "vif": ["R37G", "E179K"], "vpr": ["G6E"]}, "labels": {"aa": "INT: V72I; RT-p51: V135T, K390R; RT-p66: V135T, A297T, K390R; gp120: V37A, D66N, H167N; gp41: D113E, A189T, K231R; nef: L85V, F139L; p17: V82I, D102E; p24: H87Q, M96I; rev: T93A; vif: R37G, E179K; vpr: G6E"}}, "children": [{"name": "F1_NODE_0000030", "node_attrs": {"div": 0.09168, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A10G", "C96T", "A426C", "G428A", "A513T", "T539C", "G608A", "C623T", "A881G", "T992A", "T1046A", "G1256A", "C1292A", "A1339G", "A1418G", "T1514C", "C1598T", "T1752C", "C1775G", "A1857G", "T1978G", "A1979G", "A2498C", "A2693G", "T2719C", "G2995A", "G3010A", "C3252T", "T3431G", "A3454G", "C3610T", "A3814G", "T3856C", "G3869A", "C4025A", "C4207T", "A4354G", "C4534T", "C4728A", "A4937C", "G5057A", "C5544A", "A5556G", "A5629G", "-5862C", "A5956C", "G6023T", "T6025G", "-6171T", "A6195T", "-6201A", "A6303G", "-6689A", "G6714A", "T6794A", "T6829C", "-6833C", "A7126G", "C7250T", "G7333A", "T7606C", "A7880G", "G8134A", "G8242A", "A8564G", "C8661A", "G8762A", "G8864T", "G9025T"], "INT": ["V32I", "L84I"], "RT-p51": ["T135L", "T200A", "T386I"], "RT-p66": ["T135L", "T200A", "T386I", "S446A"], "gp120": ["E34D", "K150R", "R287Q", "L314I"], "gp41": ["M4I", "L7V", "I193V"], "nef": ["E174D"], "p17": ["M31L", "I60L", "N109K"], "p24": ["D187E", "K203R"], "p6": ["D32E"], "pro": ["K20R", "D60E", "N61D"], "rev": ["K14R", "G96R"], "vif": ["H48N", "E117D"], "vpu": ["S8G"]}, "labels": {"aa": "INT: V32I, L84I; RT-p51: T135L, T200A, T386I; RT-p66: T135L, T200A, T386I, S446A; gp120: E34D, K150R, R287Q, L314I; gp41: M4I, L7V, I193V; nef: E174D; p17: M31L, I60L, N109K; p24: D187E, K203R; p6: D32E; pro: K20R, D60E, N61D; rev: K14R, G96R; vif: H48N, E117D; vpu: S8G"}}, "children": [{"name": "MG365763", "node_attrs": {"div": 0.12803, "accession": "MG365763", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01BRRJSB153"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G121T", "A368G", "A388G", "A438G", "G524A", "T525C", "A530G", "A548G", "A571T", "T593C", "T602G", "G615A", "G620A", "C662G", "C679A", "A685C", "C688T", "A699C", "T748C", "A755G", "G762A", "C765T", "G770A", "G806A", "G829A", "T861G", "G869A", "G1192A", "A1208G", "C1295A", "A1450G", "A1464C", "G1472A", "A1476G", "G1495A", "A1499G", "T1501C", "T1505C", "A1536C", "A1543G", "G1640A", 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"G5167A", "T5263A", "T5281A", "A5355C", "G5370A", "T5398C", "C5461A", "G5462A", "T5479C", "A5548C", "C5552A", "G5565A", "T5579C", "T5616C", "C5653T", "G5706A", "G5810A", "-5861A", "A5865G", "C5964T", "T6024G", "G6029A", "A6061T", "G6121A", "G6130C", "A6168G", "A6173-", "-6180T", "C6189T", "A6194G", "-6198C", "-6203A", "-6204G", "-6205C", "G6225A", "G6226T", "C6247T", "G6263C", "G6277A", "A6316G", "C6322A", "A6323G", "A6324G", "G6329C", "T6331A", "A6335G", "G6336A", "T6337A", "-6340C", "A6465G", "A6489G", "A6520G", "A6544G", "C6559T", "C6563T", "G6605A", "T6607C", "A6682G", "C6692A", "A6695T", "T6721C", "C6766T", "G6776T", "A6798G", "A6807G", "G6819A", "G6820A", "-6821T", "C6824T", "-6834A", "A6839G", "A6840C", "T6860C", "G6935T", "A6937G", "A6945G", "-6947G", "-6948A", "-6949C", "-6950A", "-6951C", "-6952A", "-6953G", "-6954A", "-6955A", "-6956T", "-6957T", "-6958C", "-6959A", "-6960A", "-6961T", "-6962G", "-6963A", "-6964T", "-6965A", "-6966G", "T7003-", "G7004-", "C7012T", "T7039A", "A7056G", "T7130C", "A7138G", "A7152C", "T7153C", "T7156C", "G7160A", "A7161C", "C7164A", "A7190G", "T7192G", "A7197G", "A7216G", "G7269A", "A7279G", "A7281G", "A7289C", "G7339A", "G7369A", "A7402G", "T7433C", "T7627A", "G7631C", "G7640C", "G7677A", "C7684T", "G7688A", "A7693C", "G7701A", "A7706C", "G7717A", "A7744G", "A7747T", "T7751C", "G7769A", "G7790A", "T7801C", "T7877G", "A7887G", "T7888A", "G7915A", "T7930C", "A7931C", "A8029G", "G8030A", "C8031G", "A8051C", "T8112C", "A8132G", "G8141C", "A8180C", "G8181T", "C8293T", "G8317A", "T8333C", "T8337A", "A8338G", "G8349A", "G8354T", "A8388G", "G8402A", "A8409G", "C8412-", "C8413-", "T8414-", "A8417T", "G8418C", "C8450T", "A8455G", "G8476A", "C8480T", "C8491A", "G8588A", "C8603T", "T8644C", "C8648T", "A8652C", "C8687T", "C8690T", "G8759A", "A8777C", "G8795A", "C8831T", "A8837G", "A8851T", "A8869G", "A8870C", "A8874G", "G8880A", "T8881C", "A8892G", "A8893T", "C8927A", "G8933A", "G8945A", "A8952C", "T8993C", "C9023A"], "INT": ["N17T", "L45I", "I72V", "F100Y", "T119P", "I161S"], "RT-p51": ["M39T", "C162H", "G196E", "E207Q", "K211R", "A286T", "Q334L", "M357K", "L377M", "S379G"], "RT-p66": ["M39T", "C162H", "G196E", "E207Q", "K211R", "A286T", "T297A", "Q334L", "M357K", "L377M", "S379G", "R461K", "L469I", "Q483H", "S491P", "K527N", "K530R"], "gp120": ["-3T", "E4G", "A37V", "V57W", "E59K", "K69N", "N105S", "-107K", "N108E", "-123P", "G124D", "V137L", "N157-", "N159G", "S160T", "N161G", "-162N", "K204S", "K212R", "E240G", "D251N", "S280T", "I281L", "T308S", "E315G", "K318R", "H324Y", "P326H", "-328A", "K329-", "S336P", "G361W", "N364S", "-367E", "-368F", "-370D", "-371S", "E401G", "N432Q", "-436T", "T437N", "N446E", "K448R", "Q476R", "K479Q"], "gp41": ["M54L", "Y108Q", "D109E", "E110Q", "E113Q", "S125N", "E129N", "E130D", "R133K", "I135L", "E148D", "A156T", "D163N", "S192A", "N195R", "I210L", "A243S", "I270T", "R277G", "E280Q", "S293L", "L345Q"], "nef": ["G3S", "K4N", "I16V", "M20I", "T23A", "A27E", "E28G", "G29-", "E38G", "S45N", "A50D", "I101T", "K104Q", "Q107K", "Q170L", "E176G", "R178G", "V180T", "K184V", "K204Q"], "p17": ["K18R", "I35V", "Y79F", "H89Q", "V94I", "T115K", "Q117P", "A118V", "K122Q"], "p2": ["N9S", "T12V", "V13L"], "p24": ["L6P", "V11I", "H12Y", "S33N", "S44A", "R154K"], "p6": ["S24P", "L35Q", "A39T"], "p7": ["S4G", "R10K", "I12T", "I24L", "K26R"], "pro": ["K14G"], "rev": ["T10E", "E11D", "L13I", "R17K", "Y28P", "S61E", "E68A", "E95G", "G98A", "E111A"], "tat": ["R29K", "Y35H", "T58P", "P59H", "L68P", "I74T"], "vif": ["G37R", "F39C", "E60K", "A62D", "R93K", "I124L", "K128R", "K158Q", "Q167K", "M189I"], "vpr": ["E17Q", "I84L", "V89I"], "vpu": ["D3Y", "G72E"]}, "labels": {"aa": "INT: N17T, L45I, I72V, F100Y, T119P, I161S; RT-p51: M39T, C162H, G196E, E207Q, K211R, A286T, Q334L, M357K, L377M, S379G; RT-p66: M39T, C162H, G196E, E207Q, K211R, A286T, T297A, Q334L, M357K, L377M, S379G, R461K, L469I, Q483H, S491P, K527N, K530R; gp120: -3T, E4G, A37V, V57W, E59K, K69N, N105S, -107K, N108E, -123P, G124D, V137L, N157-, N159G, S160T, N161G, -162N, K204S, K212R, E240G, D251N, S280T, I281L, T308S, E315G, K318R, H324Y, P326H, -328A, K329-, S336P, G361W, N364S, -367E, -368F, -370D, -371S, E401G, N432Q, -436T, T437N, N446E, K448R, Q476R, K479Q; gp41: M54L, Y108Q, D109E, E110Q, E113Q, S125N, E129N, E130D, R133K, I135L, E148D, A156T, D163N, S192A, N195R, I210L, A243S, I270T, R277G, E280Q, S293L, L345Q; nef: G3S, K4N, I16V, M20I, T23A, A27E, E28G, G29-, E38G, S45N, A50D, I101T, K104Q, Q107K, Q170L, E176G, R178G, V180T, K184V, K204Q; p17: K18R, I35V, Y79F, H89Q, V94I, T115K, Q117P, A118V, K122Q; p2: N9S, T12V, V13L; p24: L6P, V11I, H12Y, S33N, S44A, R154K; p6: S24P, L35Q, A39T; p7: S4G, R10K, I12T, I24L, K26R; pro: K14G; rev: T10E, E11D, L13I, R17K, Y28P, S61E, E68A, E95G, G98A, E111A; tat: R29K, Y35H, T58P, P59H, L68P, I74T; vif: G37R, F39C, E60K, A62D, R93K, I124L, K128R, K158Q, Q167K, M189I; vpr: E17Q, I84L, V89I; vpu: D3Y, G72E"}}}, {"name": "MG365768", "node_attrs": {"div": 0.13815, "accession": "MG365768", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11BRRJPR90"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T95C", "G206A", "A263T", "-304T", "-305T", "A317G", "G455A", "T473C", "T495C", "A497G", "C531T", "A541C", "A562G", "A579C", "A604T", "A607G", "G629A", "G641A", "G651A", "C662A", "A663G", "A680G", "C684A", "A697C", "C698A", "A700C", "A740G", "G743A", "T771G", "T773C", "A810G", "T852A", "G935A", "C944T", "A945G", "C947T", "T1040C", "T1064G", "C1094T", "G1173A", "T1174C", "A1190C", "C1235T", "A1271G", "G1277A", "G1278A", "G1279A", "A1293T", "C1362T", "G1388A", "A1442G", "A1445G", "A1449C", "G1455A", "A1586G", "G1588A", "T1681C", "A1687G", "G1691A", "C1692A", "T1728A", "G1731A", "-1746C", "-1747C", "-1748A", "C1749T", "T1754-", "C1755-", "C1756-", "G1784A", "A1819G", "C1833A", "G1848A", "G1852A", "A1861G", "C1865T", "T1954G", "C1985A", "A1993T", "A2012G", "G2038A", "G2074A", "A2197G", "A2212G", "A2215G", "T2237A", "A2241G", "C2263T", "A2293G", "G2311A", "G2422A", "C2503T", "A2560G", "A2578G", "C2596T", "A2612G", "A2616G", "G2686A", "A2716G", "A2728G", "A2764G", "C2839A", "A2884G", "T2983C", "T3002C", "A3028G", "G3058A", "A3080C", "G3085A", "G3094A", "G3169A", "A3220T", "G3307T", "G3340A", "C3346A", "A3448G", "A3481G", "A3490G", "G3494A", "G3523A", "G3529A", "C3567T", "G3574A", "A3583G", "T3644A", "T3668C", "A3761G", "A3770G", "G3796A", "G3805A", "A3808T", "A3825G", "T3853C", "T3909A", "A3937G", "T3943C", "C4047A", "C4058A", "G4145A", "T4152C", "C4180T", "G4183A", "A4225G", "C4321T", "G4388T", "G4475A", "G4549A", "A4564G", "G4622A", "G4637A", "G4673A", "A4692C", "T4702A", "T4703C", "C4715T", "G4719C", "T4742C", "A4765G", "A4769T", "C4827T", "A4845G", "A4850G", "G4871C", "A4878G", "C4898T", "A4911C", "T4912G", "T4914C", "T4932A", "A4952T", "C4965T", "G4969A", "A5015G", "T5043C", "G5049T", "T5072C", "C5115T", "A5121G", "G5137A", "A5187C", "G5212A", "A5225G", "C5237T", "G5257A", "T5260C", "A5293G", "T5294C", "C5306T", "T5336A", "T5384C", "T5403G", "C5445A", "T5482C", "A5491G", "G5496A", "G5538A", "C5542T", "G5543C", "A5548G", "T5567A", "A5568C", "C5584T", "C5612T", "T5614A", "A5626C", "C5636T", "T5641C", "A5644G", "A5652G", "C5663T", "G5668A", "G5671A", "G5673A", "A5699G", "T5727C", "G5730T", "A5738G", "G5747T", "A5751G", "A5793T", "G5802A", "A5806G", "G5839A", "A5856G", "-5861G", "A5866C", "C5884T", "C5916A", "C5917G", "T5920C", "C5929T", "T5944C", "A5958G", "T5980C", "T6010C", "G6020A", "A6022G", "A6065G", "T6085C", "C6115T", "T6134A", "T6151G", "G6170T", "C6172G", "-6174G", "-6175T", "-6180C", "T6187C", "G6188A", "C6190A", "C6196A", "-6198A", "A6200G", "C6209T", "G6220T", "C6221T", "G6227A", "C6233A", "T6241C", "A6251G", "T6252C", "G6267C", "G6274A", "C6278A", "A6304G", "A6320C", "T6337C", "-6340T", "T6341A", "C6343T", "G6392A", "T6393C", "A6430G", "G6451A", "G6458A", "T6460C", "A6465C", "C6469T", "G6490C", "G6573A", "G6611A", "A6616G", "C6618A", "A6628G", "G6638C", "C6693G", "A6706G", "G6716A", "G6754A", "T6769C", "C6777T", "G6793A", "G6809A", "A6818G", "-6821G", "-6834T", "A6854G", "C6856A", "T6857C", "G6871A", "T6932G", "T6946C", "-6989A", "-6990A", "-6991C", "-6992A", "-6993C", "-6994T", "-6995G", "-6996A", "-6997T", "-6998A", "-6999A", "-7000G", "-7001A", "-7002A", "G7004A", "-7005T", "G7026A", "A7036G", "T7039C", "G7040A", "A7060G", "A7095G", "C7127A", "T7147C", "A7152G", "T7153A", "G7160T", "A7161G", "T7162C", "A7219G", "G7256A", "G7269C", "A7297C", "G7309C", "T7325C", "C7328A", "T7359G", "G7364T", "C7365T", "G7369C", "A7373G", "A7376G", "T7444C", "C7463A", "A7504G", "A7533G", "G7534A", "C7625T", "G7628A", "G7630T", "G7631A", "A7632T", "C7678T", "T7690A", "G7709C", "G7720A", "A7722G", "A7732C", "G7759A", "A7782G", "C7792A", "A7818G", "A7921G", "A7929C", "A8019G", "A8029C", "C8092A", "C8103T", "G8109A", "G8130A", "C8145T", "C8146T", "T8153C", "A8154T", "T8155C", "G8170A", "C8171T", "A8172T", "A8180G", "C8221T", "A8222G", "C8223T", "A8228G", "G8234A", "T8235C", "G8255A", "G8354A", "A8364C", "T8375G", "C8386A", "T8387A", "A8390T", "G8432A", "G8441A", "G8479A", "T8492C", "A8519G", "G8534A", "C8552T", "C8651T", "A8652G", "G8654T", "A8656G", "A8662G", "T8675C", "A8701T", "A8719G", "T8770A", "C8810T", "C8835T", "G8868C", "A8869C", "A8892C", "C8904A", "G8905C", "C8978A", "C8989T", "A8991G", "G8994C", "A9007G", "-9009G", "A9019T", "C9028T", "C9068T", "T9074-", "C9075-", "G9076-", "C9077-", "C9078-", "T9079-", "G9080-", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "A9095-", "G9096-", "T9097-", "T9098-", "A9099-", "G9100-", "C9102G", "A9106-", "T9107-", "T9108-", "T9109-", "G9110-", "A9111-", "G9112-", "C9113-", "C9114-", "T9115-", "G9116-", "G9117-", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-", "G9127-", "G9128-", "C9129-", "T9130-", "A9131-", "G9132-", "C9133-", "T9134-", "A9135-", "G9136-", "G9137-", "G9138-", "A9139-", "A9140-", "C9141-", "C9142-", "C9143-", "A9144-"], "INT": ["E11D", "N17S", "L45Q", "A91E", "Q95K", "A124T", "V126A", "A205S", "V234I", "G283S", "D288N"], "RT-p51": ["S48T", "K49R", "T173A", "K174R", "D248E", "A297T", "I329L", "E404D"], "RT-p66": ["S48T", "K49R", "T173A", "K174R", "D248E", "I329L", "E404D", "V467I", "S491L", "L517I", "I556V", "I559V"], "gp120": ["N1S", "-3A", "E4D", "T21K", "K35R", "V56M", "V57L", "N71D", "L94I", "-107S", "-109A", "-110T", "-111N", "-112T", "-113N", "-114S", "E122-", "A125T", "Q127K", "M133A", "R138T", "Q142K", "I156L", "S160A", "N161T", "-162E", "V180T", "D202N", "K204T", "K212N", "A253T", "T255N", "E262Q", "S280R", "A288T", "T308V", "A319T", "K322G", "S323A", "P326L", "N334E", "S335P", "S360A", "D365N", "-367D", "-368K", "-370I", "-371T", "T385-", "R391Q", "V396I", "N414S", "L425I", "N433R", "-436C", "V468I", "K472T", "E481D"], "gp41": ["F8L", "L9I", "M19R", "A21L", "M24V", "T25A", "K77R", "D109N", "E110M", "E136Q", "N140S", "E143D", "N160S", "D163E", "K172R", "H209P", "N239S", "L242F", "F263L", "A267V", "R269K", "R276K", "A281V", "Y284L", "Q290L", "S293G", "T307V", "I309V", "V311T", "V318I"], "nef": ["S8R", "A15E", "S46N", "K104D", "K105R", "Q107R", "Y120F", "N126S", "F143Y", "E176P", "K184Q", "R188T"], "p17": ["S54P", "P66S", "Q69P", "K76R", "I82L", "Q90L", "K91R", "E106K", "K110E", "Q117K", "D121A", "K122T"], "p2": ["N9H", "A11-"], "p24": ["S14A", "I27V", "S41T", "M68I", "T72A", "V148T", "G183N", "T188S"], "p6": ["L1P", "N3S", "P5T", "F17I", "G18R", "N47S", "Q52K"], "p7": ["R41K"], "pro": ["T12K", "G17E", "L63I", "E65D", "I72V"], "rev": ["S8N", "T10Q", "Y18T", "S61R", "H82N", "P100S", "I102T", "S103P", "A108I", "E111G"], "tat": ["L3P", "D9E", "W36R", "T39A", "R56S", "T58A", "I64N", "P70S", "I74L"], "vif": ["M29I", "K36Q", "F39Y", "E45Q", "E60G", "E61D", "I87V", "R95S", "I98V", "I109R", "Y110H", "S116T", "K122N", "H127Y", "A155S", "P177S", "K179E", "R184K"], "vpr": ["A4V", "E6G", "N28T", "S41G", "H45Y", "I63M", "H77Q"], "vpu": ["S2L", "D3N", "I7L", "A10V", "I13V", "A19V", "V21I", "V22I", "K31R", "R41S", "K44R", "R47I", "M71V", "D78N"]}, "labels": {"aa": "INT: E11D, N17S, L45Q, A91E, Q95K, A124T, V126A, A205S, V234I, G283S, D288N; RT-p51: S48T, K49R, T173A, K174R, D248E, A297T, I329L, E404D; RT-p66: S48T, K49R, T173A, K174R, D248E, I329L, E404D, V467I, S491L, L517I, I556V, I559V; gp120: N1S, -3A, E4D, T21K, K35R, V56M, V57L, N71D, L94I, -107S, -109A, -110T, -111N, -112T, -113N, -114S, E122-, A125T, Q127K, M133A, R138T, Q142K, I156L, S160A, N161T, -162E, V180T, D202N, K204T, K212N, A253T, T255N, E262Q, S280R, A288T, T308V, A319T, K322G, S323A, P326L, N334E, S335P, S360A, D365N, -367D, -368K, -370I, -371T, T385-, R391Q, V396I, N414S, L425I, N433R, -436C, V468I, K472T, E481D; gp41: F8L, L9I, M19R, A21L, M24V, T25A, K77R, D109N, E110M, E136Q, N140S, E143D, N160S, D163E, K172R, H209P, N239S, L242F, F263L, A267V, R269K, R276K, A281V, Y284L, Q290L, S293G, T307V, I309V, V311T, V318I; nef: S8R, A15E, S46N, K104D, K105R, Q107R, Y120F, N126S, F143Y, E176P, K184Q, R188T; p17: S54P, P66S, Q69P, K76R, I82L, Q90L, K91R, E106K, K110E, Q117K, D121A, K122T; p2: N9H, A11-; p24: S14A, I27V, S41T, M68I, T72A, V148T, G183N, T188S; p6: L1P, N3S, P5T, F17I, G18R, N47S, Q52K; p7: R41K; pro: T12K, G17E, L63I, E65D, I72V; rev: S8N, T10Q, Y18T, S61R, H82N, P100S, I102T, S103P, A108I, E111G; tat: L3P, D9E, W36R, T39A, R56S, T58A, I64N, P70S, I74L; vif: M29I, K36Q, F39Y, E45Q, E60G, E61D, I87V, R95S, I98V, I109R, Y110H, S116T, K122N, H127Y, A155S, P177S, K179E, R184K; vpr: A4V, E6G, N28T, S41G, H45Y, I63M, H77Q; vpu: S2L, D3N, I7L, A10V, I13V, A19V, V21I, V22I, K31R, R41S, K44R, R47I, M71V, D78N"}}}]}, {"name": "F1_NODE_0000031", "node_attrs": {"div": 0.08637, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T2499C", "T3045C", "A3766G", "C3857A", "G3859A", "G4148A", "G6478A", "C6800A", "A6825C", "T6932A", "G6936A", "A7428G", "G8288A", "A8426G", "C8590G"], "INT": ["L28I", "A125T"], "RT-p51": ["A297T", "V317A"], "RT-p66": ["V317A"], "gp120": ["D202E", "D241E", "Q316K", "N327-", "S360T", "G361E", "A409N"], "gp41": ["N42S", "V329I"], "nef": ["A83G"]}, "labels": {"aa": "INT: L28I, A125T; RT-p51: A297T, V317A; RT-p66: V317A; gp120: D202E, D241E, Q316K, N327-, S360T, G361E, A409N; gp41: N42S, V329I; nef: A83G"}}, "children": [{"name": "KU749396", "node_attrs": {"div": 0.13603, "accession": "KU749396", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMF111BR037"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T91A", "A261G", "G365C", "C393A", "A419G", "G424A", "A431G", "C471G", "T495C", "A509G", "A515T", "G520C", "A579G", "A619G", "G641T", "C662G", "G702-", "G703-", "-711A", "-712A", "-713A", "-714G", "-715A", "C767T", "T774C", "A776G", "G821A", "T852G", "A866C", "A920G", "A932G", "T978G", "A998G", "A1002G", "C1007A", "A1019G", "T1040C", "T1046G", "T1058C", "G1126A", "A1145G", "T1174C", "G1192A", "G1278A", "G1279A", "T1335C", "A1359T", "C1362T", "T1385C", "A1400G", "A1449G", "A1450G", "A1452G", "A1464C", "A1467C", "T1478C", "G1498A", "A1564G", "A1595G", "A1619G", "C1656A", "C1670A", "A1673G", "A1687G", "C1692A", "A1719T", "G1731A", "T1741C", "C1751A", "T1752G", "A1774C", "T1783A", "T1796C", "A1839G", "G1848A", "A1849T", "G1858A", "A1907G", "G1912A", "A1920G", "A1993C", "G2008A", "A2012G", "G2023A", "T2035C", "A2059G", "T2087C", "G2134A", "A2152T", "A2178C", "A2210T", "A2224G", "T2236C", "C2296T", "A2344G", "A2350G", "A2404T", "G2407A", "G2431A", "T2464A", "C2467T", "G2530A", "C2605T", "A2612G", "C2626A", "A2627C", "C2635T", "G2704A", "T2708C", "A2752G", "C2822T", "C2839A", "G2842A", "A2878G", "G2921A", "C2927G", "C2975A", "C2985A", "G3043A", "T3052C", "A3109C", "T3225A", "A3230T", "A3251G", "A3279G", "T3328C", "C3346T", "C3352T", "A3367G", "A3451G", 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"P5T", "S14C", "G18R", "I21T", "S24A", "D32A", "L35Q"], "p7": ["M1L", "R11K", "K33R"], "pro": ["K14R", "G17D", "N37D", "K41R", "E65D", "I72V"], "rev": ["R17K", "Y28P", "I55L", "E87K", "G90E", "A93T", "E95Q", "E111V"], "tat": ["E2D", "L3P", "V4I", "D9E", "T19P", "T23N", "T39A", "R56H", "S61G", "L68S", "I74S", "P81Q"], "vif": ["M29I", "H30N", "R50K", "E60K", "L64I", "V65E", "I66V", "R93K", "R95K", "K128R", "G182D", "H183R"], "vpr": ["Y15H", "N28E", "R32K", "I84L", "R87A", "V89L", "N91H", "A93S", "S94N", "S96P"], "vpu": ["S2I", "D3S", "A19V", "Y27F", "V34R", "R35K", "K44E", "I46L", "I75L"]}, "labels": {"aa": "INT: L45Q, D55N, L84I, K211R; RT-p51: E28A, M39L, K103N, D123E, T173A, D177E, I178L, P243S, D248E, V276I, Q278E, P294T, T297K, L377Q, S379C, T386A, K395R; RT-p66: E28A, M39L, K103N, D123E, T173A, D177E, I178L, P243S, D248E, V276I, Q278E, P294T, T297K, L377Q, S379C, T386A, K395R, L517V, K527N, A554T; gp120: N1S, N5K, Y11H, A32S, K35T, N52S, V56L, V57D, E59V, N64D, N71S, E74D, T78A, N102M, N105D, L106P, N108-, E122-, M133T, V137I, R138I, Q142K, H145R, I153L, -162G, N201K, K203E, K224R, E239T, E240K, A253T, E262V, V264I, S280P, I281L, V305I, T308G, Q309T, A319K, K320E, K322-, K332M, N334K, S335P, S336H, S337A, L341P, E361K, D365N, -367R, -368Y, -384D, R391Q, A408T, N409S, -436N, T439I, N446D, V468I, K472R, Q476R, K479E, E481Q; gp41: L7M, G13A, M24I, V28A, S35F, N96T, E129G, E136Q, E137M, N140E, K144Q, Q147K, A156S, D163N, H209L, I210L, N239S, D272N, R276S, A281V, S293C, K297R, V318A, Q323R, G326V, R327T; nef: R22Q, E28R, G29E, E38A, R49S, A50T, D54E, E63D, K104R, E152D, Q170L, R178K, K182V, E201D; p1: H9N; p17: R30K, L46V, S54P, G62A, I82V, K95R, E102D, N109K, G123K, -124E; p2: N9G, T10A, T12V, V13L; p24: S41A, E45D, L83V, Q87H, I91V, I96M, R132K, V148A, R154K, G183N, T210S; p6: N3S, P5T, S14C, G18R, I21T, S24A, D32A, L35Q; p7: M1L, R11K, K33R; pro: K14R, G17D, N37D, K41R, E65D, I72V; rev: R17K, Y28P, I55L, E87K, G90E, A93T, E95Q, E111V; tat: E2D, L3P, V4I, D9E, T19P, T23N, T39A, R56H, S61G, L68S, I74S, P81Q; vif: M29I, H30N, R50K, E60K, L64I, V65E, I66V, R93K, R95K, K128R, G182D, H183R; vpr: Y15H, N28E, R32K, I84L, R87A, V89L, N91H, A93S, S94N, S96P; vpu: S2I, D3S, A19V, Y27F, V34R, R35K, K44E, I46L, I75L"}}}, {"name": "F1_NODE_0000032", "node_attrs": {"div": 0.09095, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T988C", "T992G", "C1013T", "A1580G", "C1680A", "T1682C", "A1701T", "G2026A", "G3221T", "T3310C", "A3334G", "C3399T", "T3779C", "T3946C", "C4321T", "G4677A", "G4737A", "G4871A", "T6193C", "T6199-", "A6279T", "C6318A", "A7060G", "G7079A", "C7080A", "A7313C", "T7433C", "T7796A", "A7799C", "A7921T", "T8037C", "G8170A", "A8219G"], "RT-p51": ["A376S", "A435V"], "RT-p66": ["A376S", "A435V"], "gp120": ["Q142L", "P155Q", "K204N", "-371T", "N434T", "-436E"], "gp41": ["M4L", "D109E", "S165T", "N166Q", "L206F", "V245A", "T306A"], "p24": ["V86T"], "p6": ["L1I", "T8S"], "rev": ["A108T"], "vif": ["V31I", "V51I"]}, "labels": {"aa": "RT-p51: A376S, A435V; RT-p66: A376S, A435V; gp120: Q142L, P155Q, K204N, -371T, N434T, -436E; gp41: M4L, D109E, S165T, N166Q, L206F, V245A, T306A; p24: V86T; p6: L1I, T8S; rev: A108T; vif: V31I, V51I"}}, "children": [{"name": "AF005494", "node_attrs": {"div": 0.11371, "accession": "AF005494", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 1993.0}, "Strain_name": {"value": "93BR020_1"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A214-", "G215A", "T228A", "-304A", "T306-", "A380T", "A426C", "G428A", "A438G", "G620A", "A632G", "A666G", "A670G", "G690A", "A692T", "C698A", "C830T", "A959G", "G987A", "T1001C", "T1004C", "A1089G", "C1118G", "A1176G", "A1367G", "G1461A", "T1511C", "A1592G", "A1607G", "A1619G", "C1656A", "T1676C", "A1700G", "G1725A", "T1741C", "C1751A", "A1839G", "A1904G", "A1980G", "A2007G", "G2008A", "T2071C", "A2090C", "A2113G", "A2212G", "A2224G", "A2380G", "T2386A", "T2484C", "A2519G", 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"C6482T", "C6499T", "T6577G", "A6581G", "A6628G", "T6688A", "-6689A", "C6692T", "A6695T", "C6717T", "G6725A", "A6734G", "T6735A", "G6776A", "A6786G", "T6787G", "A6790C", "A6798C", "G6809-", "C6810G", "A6811C", "G6814A", "T6815G", "A6817T", "-6821G", "C6822T", "T6823C", "C6824T", "C6825T", "T6826A", "-6830C", "-6831C", "-6832C", "A6839G", "A6840C", "T6888G", "G6894A", "G6906T", "A6907G", "C6925T", "A6932G", "C6933A", "A6934T", "-6947G", "-6948A", "-6949C", "-6950A", "-6951C", "-6952A", "-6953A", "-6954A", "-6955A", "-6956T", "-6957T", "-6958C", "-6959A", "-6960A", "-6961T", "-6989G", "-6990A", "-6991C", "-6992A", "-6993C", "-6994A", "-6995G", "-6996G", "-6997A", "-6998T", "-6999T", "-7000C", "-7001A", "-7002A", "-7005G", "A7126G", "A7152G", "A7155C", "T7162G", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "G7269A", "A7299G", "G7322C", "A7348T", "A7366G", "G7375A", "A7626T", "A7641G", "C7658G", "A7673G", "G7688A", "T7690A", "G7714C", "G7753A", "T7801G", "G7995A", "C8009A", "A8019C", "A8051C", "G8130A", "C8146T", "A8180G", "T8232C", "G8243T", "A8405G", "G8534C", "T8582C", "A8656G", "T8757A", "G8875A", "G8888A", "A8892G", "A8952C", "A9007-", "G9008-", "-9009A", "C9012G", "G9013T", "-9014G", "T9115C", "C9181T"], "INT": ["P30A", "I101L", "I200T", "K211R"], "RT-p51": ["F130S", "I142V", "C162Y", "T173A", "F214L"], "RT-p66": ["F130S", "I142V", "C162Y", "T173A", "F214L", "I559V"], "gp120": ["-3A", "A32S", "N64R", "K69E", "N102D", "L106G", "-107T", "-109D", "-110T", "-111I", "-112A", "-113I", "-114N", "G124-", "A125-", "M133T", "V137I", "N157D", "N159R", "S160T", "N161-", "N169D", "T170A", "N206T", "P210S", "E240G", "I243V", "S278R", "I281L", "A288V", "A291T", "D294E", "N311R", "K312N", "E315A", "A319-", "-328A", "K329-", "M345R", "S347N", "R351M", "T360D", "-367K", "-368F", "-370D", "-376G", "-377F", "-378N", "-379G", "-380T", "T385-", "N433S", "E438-", "T439-", "K482R"], "gp41": ["M24I", "M54L", "Y108L", "E113G", "Q119E", "I124V", "E129K", "E137D", "R231K", "N239T", "R276K", "S293G", "V310A", "G314W"], "nef": ["E64D", "K105R", "L139M", "R178K", "K184E", "K204Q"], "p1": ["H9N"], "p17": ["M31L", "I35V", "S111G", "Q112R", "A119T", "D121E"], "p2": ["T12-", "V13I"], "p24": ["S120G", "I129M", "S149G"], "p6": ["G16R", "I21T"], "pro": ["K14R", "I36V", "N61S", "K70R", "N98H"], "rev": ["T10Q", "A54E", "E57D", "E68A", "P100S", "E111G"], "tat": ["K24R", "R29W", "R56P", "L68F"], "vif": ["R50K", "E61T", "K63E", "H73L", "T74P", "D78E", "G185E"], "vpr": ["E21D", "H77R", "I84T", "A93T"], "vpu": ["D3N", "S8G", "A19T", "V26A", "R47S", "M71V"]}, "labels": {"aa": "INT: P30A, I101L, I200T, K211R; RT-p51: F130S, I142V, C162Y, T173A, F214L; RT-p66: F130S, I142V, C162Y, T173A, F214L, I559V; gp120: -3A, A32S, N64R, K69E, N102D, L106G, -107T, -109D, -110T, -111I, -112A, -113I, -114N, G124-, A125-, M133T, V137I, N157D, N159R, S160T, N161-, N169D, T170A, N206T, P210S, E240G, I243V, S278R, I281L, A288V, A291T, D294E, N311R, K312N, E315A, A319-, -328A, K329-, M345R, S347N, R351M, T360D, -367K, -368F, -370D, -376G, -377F, -378N, -379G, -380T, T385-, N433S, E438-, T439-, K482R; gp41: M24I, M54L, Y108L, E113G, Q119E, I124V, E129K, E137D, R231K, N239T, R276K, S293G, V310A, G314W; nef: E64D, K105R, L139M, R178K, K184E, K204Q; p1: H9N; p17: M31L, I35V, S111G, Q112R, A119T, D121E; p2: T12-, V13I; p24: S120G, I129M, S149G; p6: G16R, I21T; pro: K14R, I36V, N61S, K70R, N98H; rev: T10Q, A54E, E57D, E68A, P100S, E111G; tat: K24R, R29W, R56P, L68F; vif: R50K, E61T, K63E, H73L, T74P, D78E, G185E; vpr: E21D, H77R, I84T, A93T; vpu: D3N, S8G, A19T, V26A, R47S, M71V"}}}, {"name": "F1_NODE_0000033", "node_attrs": {"div": 0.11593, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A302T", "A303-", "G365C", "G378C", "C379A", "A431G", "G455A", "C462A", "C471G", "T495C", "C507A", "G520C", "A562G", "T593C", "C626A", "C669A", "A697C", "A700C", "T774C", "A977G", "T978A", "G987T", "T1028G", "G1192A", "T1299C", "A1359T", "G1388A", "A1404G", "C1444T", "G1455A", "T1501C", "T1502A", "A1543G", "A1565G", "G1697A", "-1747C", "T1752C", "T1754G", "C1756A", "G1766A", "C1775A", "C1825A", "C1826G", "C1831T", "A1835G", "A1857G", "C1981T", "C1985A", "A1993T", "T2013C", "A2293G", "T2464G", "C2467T", "T2521C", "A2615C", "A2693G", "A2764G", "G2818A", "G2872A", "A2925G", "T2935C", "C3006A", "G3100A", "A3142G", "T3197C", "A3218G", "C3252T", "G3307A", "C3319T", "T3469C", "A3490G", "C3500T", "C3533G", "T3856C", "C3892T", "G3907A", "T3940C", "C4207T", "C4247T", "A4391T", "T4428C", "T4585C", "T4717A", "C4728A", "G4766A", "A4782G", "T4868C", "T4886A", "A4971G", "A5058G", "A5059G", "G5087A", "G5128A", "G5167A", "G5212A", "A5225G", "C5237T", "A5277-", "A5288-", "T5292-", "A5385G", "C5412T", "T5451C", "G5463C", "T5611C", "T5614G", "C5624T", "A5640T", "A5699G", "A5737C", "A5743C", "T5860-", "A5881G", "C5884T", "A5896G", "C5916A", "G5954A", "T6004C", "C6097T", "C6110G", "G6170-", "C6172-", "A6173-", "A6176-", "A6177-", "T6178-", "G6179-", "C6181-", "A6182G", "A6195G", "-6203G", "A6229G", "G6280A", "T6289A", "A6333G", "C6375A", "G6458A", "A6489C", "C6586T", "G6649A", "A6682G", "C6693A", "G6714A", "G6767A", "G6793A", "T6815C", "G6935A", "G6940A", "A6944-", "A6945-", "-7005A", "T7009A", "T7015A", "C7025A", "A7085G", "T7156G", "T7162C", "C7174T", "T7180A", "G7238A", "G7256A", "A7281C", "A7289C", "G7309A", "C7544A", "G7552A", "A7590G", "C7625T", "G7630A", "G7712C", "G7714A", "C7755A", "C7852T", "T7912C", "A7929T", "T7930C", "A7931C", "A7947G", "G7992A", "A8029C", "A8079T", "C8103T", "A8118G", "G8121A", "G8137T", "T8164C", "C8165A", "A8172T", "C8238G", "G8245A", "G8255A", "A8275G", "G8323T", "A8363G", "G8368A", "T8369G", "G8373C", "T8374C", "T8375A", "T8440C", "A8455C", "G8462A", "G8465A", "C8491A", "T8505G", "A8531C", "A8576T", "G8595T"], "INT": ["T206S", "I218T"], "RT-p51": ["D123E", "K174Q", "T200A", "K277R", "A304E", "I375V", "T386I"], "RT-p66": ["D123E", "K174Q", "T200A", "K277R", "A304E", "I375V", "T386I", "Q480E"], "gp120": ["T21N", "E34K", "Q86E", "-107K", "N108E", "H145Q", "T174K", "E202K", "K212T", "S280H", "R287Q", "V305I", "H324L", "N364-", "-384D", "I411V", "E462K", "V468I", "Q476P", "K479Q"], "gp41": ["L81I", "N96S", "E137Q", "A151E", "H209L", "I210L", "E215G", "G230D", "L242F", "H259L", "A267V", "D272G", "R273K", "L288I", "Q290L", "A312G", "V318I", "L340F"], "nef": ["S9K", "V11P", "V33A", "E38A", "A50D", "L55V", "E63D", "V85L"], "p17": ["A15Q", "L46V", "S54P", "G62A", "K76R", "Q112K", "D121A", "K122T"], "p2": ["A7V", "A11-"], "p24": ["L83I", "T86S", "R154K", "T210S", "S225G"], "p6": ["-26Q", "D32E", "P49Q", "S51L"], "p7": ["I12T", "K26R"], "pro": ["L10V", "I13V", "K20R", "L63I", "E65D", "I72T"], "rev": ["Y28P", "S61R", "V97L", "S106H"], "tat": ["I74S", "N80D"], "vif": ["F44Y", "H48N", "E60D", "I66V", "K128R", "I129V", "K158G", "R181K"], "vpu": ["A6V", "K31R", "K44Q", "I46L"]}, "labels": {"aa": "INT: T206S, I218T; RT-p51: D123E, K174Q, T200A, K277R, A304E, I375V, T386I; RT-p66: D123E, K174Q, T200A, K277R, A304E, I375V, T386I, Q480E; gp120: T21N, E34K, Q86E, -107K, N108E, H145Q, T174K, E202K, K212T, S280H, R287Q, V305I, H324L, N364-, -384D, I411V, E462K, V468I, Q476P, K479Q; gp41: L81I, N96S, E137Q, A151E, H209L, I210L, E215G, G230D, L242F, H259L, A267V, D272G, R273K, L288I, Q290L, A312G, V318I, L340F; nef: S9K, V11P, V33A, E38A, A50D, L55V, E63D, V85L; p17: A15Q, L46V, S54P, G62A, K76R, Q112K, D121A, K122T; p2: A7V, A11-; p24: L83I, T86S, R154K, T210S, S225G; p6: -26Q, D32E, P49Q, S51L; p7: I12T, K26R; pro: L10V, I13V, K20R, L63I, E65D, I72T; rev: Y28P, S61R, V97L, S106H; tat: I74S, N80D; vif: F44Y, H48N, E60D, I66V, K128R, I129V, K158G, R181K; vpu: A6V, K31R, K44Q, I46L"}}, "children": [{"name": "MK041565", "node_attrs": {"div": 0.14646, "accession": "MK041565", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2016.0}, "Strain_name": {"value": "9HU_UFRJ_2016"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A263T", "A317G", "A423C", "G424A", "G474A", "A510C", "A530G", "A607G", "T635A", "A656G", "G689A", "T722C", "C767T", "T771G", "C774A", "T875C", "T885C", "C926T", "G970A", "T1001C", "A1002T", "A1017C", "G1021A", "A1025T", "G1028A", "G1298A", "A1329C", "C1330T", "G1341T", "C1362T", "G1430A", "G1487A", "G1576A", "A1642G", "G1671A", "A1673G", "A1694C", "A1703G", "A1715G", "G1725A", "-1746C", "-1748A", "C1749T", "A1771G", "G1841A", "G1845A", "G1923A", "A1927G", "G1952A", "T1986C", "G2027A", "A2206C", "T2211C", "A2212T", "G2311A", "A2377C", "C2452T", "A2459G", "G2464A", "C2499T", "C2527T", "T2542G", "A2578G", "T2602C", "A2627T", "A2713G", "A2752G", "T2806C", "G2926A", "G2951A", "C3023T", "A3103G", "A3190G", "A3229G", "A3370G", "G3442C", "C3610T", "G3631A", "G3796A", "A3808G", "C3863G", "T3889C", "T3904C", "C4129T", "G4150A", "T4240C", "A4285G", "C4471T", "G4475A", "G4495A", "A4498G", "T4606C", "G4623A", "A4638G", "T4639C", "G4673A", "A4693C", "T4701G", "A4765C", "C4786T", "T4912C", "T4932A", "T4991C", "G5009A", "G5057A", "G5066A", "T5095C", "A5136G", "A5155G", "A5159G", "A5187G", "A5223T", "G5226A", "T5228C", "T5245C", "-5277C", "-5288T", "-5292C", "A5345G", "C5424T", "A5446C", "A5447G", "C5461G", "G5462A", "A5491G", "C5584T", "A5594G", "A5613T", "T5616C", "T5641C", "G5647A", "T5684C", "T5686C", "A5687T", "G5707T", "A5746G", "A5748G", "C5869T", "C5917T", "T5951C", "A5957G", "G5972A", "A6022G", "G6023T", "C6026T", "A6076C", "A6086G", "T6100C", "A6185C", "C6190T", "A6191G", "C6193A", "-6198G", "-6199C", "-6201C", "-6204T", "-6205G", "C6207A", "C6208A", "C6209A", "C6228T", "C6233A", "T6250C", "C6275G", "T6331C", "G6336A", "-6340T", "T6341A", "C6343T", "T6436G", "A6461G", "A6465G", "G6481A", "A6535T", "G6550A", "C6567T", "G6569A", "T6577G", "A6581G", "T6652C", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "A6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "G6773A", "C6777A", "G6784A", "G6797A", "A6798G", "A6799T", "G6819A", "-6821T", "C6825T", "T6835-", "T6838C", "A6840G", "A6841T", "G6878A", "A6937T", "-6944G", "-6945G", "-6947G", "-6948A", "-6949C", "-6950A", "-6951C", "-6952A", "-6953A", "-6954T", "-6955G", "-6956G", "-6957T", "-6985A", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "-6991C", "-6992A", "-6993C", "-6994A", "-6995G", "-6996A", "C7084T", "A7149C", "G7156A", "C7162A", "C7281T", "A7315G", "G7319A", "G7322C", "A7348C", "G7459T", "T7462C", "C7463A", "C7546T", "T7588C", "G7631A", "G7640C", "G7642A", "G7701A", "A7722C", "T7757C", "G7759T", "G7779T", "A7782G", "T7801A", "A7832G", "G7846A", "C7941A", "A8002G", "C8009A", "T8032G", "C8033A", "C8062G", "C8065T", "T8113A", "C8146T", "C8171T", "G8181T", "A8188G", "G8242A", "A8284G", "T8292G", "A8297G", "G8304C", "G8356T", "G8402T", "C8406A", "A8425T", "A8456G", "T8471C", "G8488A", "C8504T", "A8525C", "C8581G", "A8597T", "T8606C", "C8607T", "A8608T", "A8653G", "A8655C", "G8678C", "C8727T", "T8740C", "G8759C", "C8771T", "G8795T", "A8804G", "A8816G", "A8851T", "G8871C", "C8873T", "A8874G", "A8887G", "C8904T", "G8905C", "T8914G", "G8915T", "A8924C", "T8993C", "G8994A", "G9006T", "G9033-", "C9041T", "C9068T"], "INT": ["P30A", "V234I", "G283D", "D288G"], "RT-p51": ["M39T", "K122E", "T135I", "I178L", "A286T"], "RT-p66": ["M39T", "K122E", "T135I", "I178L", "A286T", "E449D"], "gp120": ["Y33H", "K35E", "V40I", "V57F", "E74D", "T78A", "-123P", "A125V", "Q127K", "Q141E", "N159D", "-162S", "K202N", "K203E", "N204S", "A238V", "E239K", "E240G", "I243V", "S278G", "G307R", "T308E", "W310*", "E315S", "P326-", "-328N", "K329S", "E342K", "E361N", "-364G", "-367M", "-368V", "-370N", "-372D", "N433K", "N435D", "K472R", "P476L"], "gp41": ["A6T", "Q52H", "E110K", "E113Q", "E129D", "R133K", "N140T", "W159L", "N160S", "I177V", "P213Q", "L244I", "C253W", "S293I", "L330R", "I332V", "R334T"], "nef": ["W5L", "M20I", "E28V", "R49K", "Q61H", "T80S", "L85F", "H89F", "K104R", "K105Q", "P129S", "I133T", "L139F", "E151D", "Q170L", "D177H", "R178G", "K182R", "R188S", "L191R"], "p1": ["K4R", "G14R"], "p17": ["R30Q", "D47N", "K59Q", "K91R"], "p24": ["S14A", "L15I", "W80*", "I91F", "I96L", "R97K", "E98D", "T200L", "A204S"], "p6": ["G16R", "K31R"], "p7": ["W37*"], "pro": ["V15I", "G16E", "W42*", "G52S", "I63T", "V77I"], "rev": ["T10A", "I52V", "A54E", "S62D", "P72A", "L73F", "C89S", "P100S", "T108I", "E111D", "T114A"], "tat": ["K24R", "R29D", "T39A", "P70S"], "vif": ["V7A", "V13I", "I18A", "M29I", "K36T", "F39V", "D60A", "T67I", "I109T", "S116T", "V170A", "R184G", "N190S"], "vpr": ["Q11R", "T19A", "N28S", "H40L", "S41D", "H45Y", "E58A", "R62W", "I63T", "S94G"], "vpu": ["S2P", "V14I", "V26A", "Y27L", "V34L", "R47G"]}, "labels": {"aa": "INT: P30A, V234I, G283D, D288G; RT-p51: M39T, K122E, T135I, I178L, A286T; RT-p66: M39T, K122E, T135I, I178L, A286T, E449D; gp120: Y33H, K35E, V40I, V57F, E74D, T78A, -123P, A125V, Q127K, Q141E, N159D, -162S, K202N, K203E, N204S, A238V, E239K, E240G, I243V, S278G, G307R, T308E, W310*, E315S, P326-, -328N, K329S, E342K, E361N, -364G, -367M, -368V, -370N, -372D, N433K, N435D, K472R, P476L; gp41: A6T, Q52H, E110K, E113Q, E129D, R133K, N140T, W159L, N160S, I177V, P213Q, L244I, C253W, S293I, L330R, I332V, R334T; nef: W5L, M20I, E28V, R49K, Q61H, T80S, L85F, H89F, K104R, K105Q, P129S, I133T, L139F, E151D, Q170L, D177H, R178G, K182R, R188S, L191R; p1: K4R, G14R; p17: R30Q, D47N, K59Q, K91R; p24: S14A, L15I, W80*, I91F, I96L, R97K, E98D, T200L, A204S; p6: G16R, K31R; p7: W37*; pro: V15I, G16E, W42*, G52S, I63T, V77I; rev: T10A, I52V, A54E, S62D, P72A, L73F, C89S, P100S, T108I, E111D, T114A; tat: K24R, R29D, T39A, P70S; vif: V7A, V13I, I18A, M29I, K36T, F39V, D60A, T67I, I109T, S116T, V170A, R184G, N190S; vpr: Q11R, T19A, N28S, H40L, S41D, H45Y, E58A, R62W, I63T, S94G; vpu: S2P, V14I, V26A, Y27L, V34L, R47G"}}}, {"name": "KJ849791", "node_attrs": {"div": 0.14398, "accession": "KJ849791", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_RJ015"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T45C", "G47A", "T49A", "A50G", "A54C", "C57A", "G62A", "A66G", "G68-", "C69-", "C70-", "T71-", "C72-", "A73-", "A74-", "T75-", "A76-", "A77-", "A78-", "G79-", "C80-", "T81-", "T82-", "G83-", "C84-", "C85-", "T86-", "T87-", "G88-", "A89-", "G90-", "T91-", "G92-", "C93-", "T94-", "T95-", "C96-", "A97-", "T156-", "C200G", "T201C", "A224C", "-303T", "G354A", "G508A", "T525C", "C560T", "A571T", "A595T", "G644A", "G690A", "T695A", "C698G", "-704C", "-705C", "-706G", "-707C", "-708A", "-709G", "-710G", "A725G", "A755G", "A863G", "T987C", "C1007A", "T1046G", "G1277A", "G1354C", "A1452C", "A1500C", "T1514C", "T1547C", "A1592G", "G1664A", "C1670T", "T1676C", "G1731A", "A1742C", "A1743C", "C1745A", "-1746T", "-1748T", "C1751G", "C1752A", "C1753G", "A1828G", "C1850G", "C1903T", "A2210T", "A2437C", "T2449C", "C2500T", "G2530A", "A2699G", "G2714A", "A2727G", "A2728C", "C2839A", "C2845T", "A2920G", "A2969G", "G2980A", "A3037G", "A3080T", "A3097G", "A3193G", "G3259A", "C3346A", "A3441G", "A3449G", "C3498T", "C3499T", "T3526C", "A3535G", "A3619G", "G3643A", "A3808T", "C3826T", "T3850C", "A3886G", "T3970C", "C3994T", "T4039C", "A4081T", "A4108G", "C4132T", "C4138T", "G4186A", "G4553C", "A4555T", "A4564G", "T4676C", "A4684G", "T4702G", "A4709G", "A4751C", "A4766C", "G4767A", "A4775C", "T4776A", "C4827T", "G4859A", "C4889T", "C4965T", "A5005G", "A5036G", "A5142-", "T5147C", "A5154G", "A5164G", "A5173G", "A5186C", "T5203C", "C5213G", "C5221T", "A5230G", "C5251-", "T5252-", "A5253-", "T5254-", "G5255-", "G5256-", "G5257-", "G5258-", "A5259-", "T5260-", "A5261-", "C5262-", "T5263-", "T5264-", "G5265-", "G5266-", "G5267-", "A5268-", "A5269-", "G5270-", "G5271-", "A5272-", "G5273-", "T5274-", "T5275-", "G5276-", "A5278-", "G5279-", "C5280-", "T5281-", "A5282-", "T5283-", "A5284-", "A5285-", "T5286-", "A5287-", "G5289-", "G5290-", "A5291-", "A5293-", "T5294-", "T5295-", "G5296-", "C5297-", "A5298-", "A5299-", "C5300-", 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"H127Y", "N140S", "S186-"], "vpu": ["S2T", "A19V", "I28L", "I75L"]}, "labels": {"aa": "INT: E11D, V260L; RT-p51: M39L, I202V, E207K, K211S, D248E, I292V, I329L; RT-p66: M39L, I202V, E207K, K211S, D248E, I292V, I329L, E449G, K452E, S468F; gp120: -3E, N5K, V56Q, E59G, N64K, N66D, K69N, N71D, -109D, -110P, E122-, I126L, N161S, -162N, T170S, T172I, K203N, T216I, E241D, Q247K, T255I, T269S, I279V, T308L, K316Q, K322R, S323P, L324F, -327N, K332Q, N334S, E361Q, D365-, T366-, N369-, -370S, -372K, -373S, -382G, -383N, N414K, N420T, N433D, E436N, T439I, G443W, K448R; gp41: V2I, L4G, L7V, M24L, M54L, E109T, E110D, Q147L, Q166H, I266T, G278S, T289I, Q294K, I301V, A325F, L345I; nef: S8N, T23A, Q35R, R39S, N51T, G83A; p17: V7I, R58K, Y79F, Y87F, A119T, G123A; p2: T10P; p24: S86P, G208A; p6: G18R, T22P, P23S, S24P, P25R, K27E, E29K, K31E, E32Q, E33K, G34E, *50W; p7: T12P; pro: Q18E; rev: E11D, L12I, L13V, K14R, A15I, R17N, I55L, S62F, C63G, A93T, E94K, G96E, S112Q; tat: T19A, T23N, R56H, T58H, P59R, S61N, I64L, L68P; vif: K33R, F39C, E61K, K63N, L64I, H127Y, N140S, S186-; vpu: S2T, A19V, I28L, I75L"}}}]}]}]}]}]}, {"name": "F1_NODE_0000034", "node_attrs": {"div": 0.08084, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T200G", "A317G", "G641C", "A1452G", "G1709A", "T5479C", "A5699G", "A5737G", "A5863-", "C6181T", "G6820A", "-6821G", "T6823C", "T7162G", "T7433C", "T7642G", "G7714A", "T8153C", "A8154T", "G8255A", "G8935A"], "gp120": ["A319-", "N369-"], "gp41": ["Y284L"], "nef": ["R198K"], "rev": ["G90E", "I102T"], "vpr": ["H77Q"], "vpu": ["K31R", "K44E"]}, "labels": {"aa": "gp120: A319-, N369-; gp41: Y284L; nef: R198K; rev: G90E, I102T; vpr: H77Q; vpu: K31R, K44E"}}, "children": [{"name": "F1_NODE_0000035", "node_attrs": {"div": 0.08299999999999999, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A1673G", "A2925G", "A3674C", "C5221T", "C5544A", "-6171C", "T6178C", "A6326G", "A6489G", "T6688-", "T6690-", "C6692-", "-6697A", 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"vpu": ["A19V", "I46L", "M71V", "N80A"]}, "labels": {"aa": "INT: I268L; RT-p51: D177E; RT-p66: D177E; gp120: E34D, -106A, -111N, -113N, K204T, V305I, -319A, T439I, E464Q; gp41: M54L, K77Q, G230D, Q290L, L304F, V318I, A321V; nef: G3N, M20L, V33A, L55V, L191F, R192H, Q204K; p17: K28Q, K76R, V92I, T115A; p2: -10A; pro: N37D, M89L; rev: E90G; tat: Y35H; vif: A62D, K128R, E179K; vpr: G6E, Q77H; vpu: A19V, I46L, M71V, N80A"}}, "children": [{"name": "KT427774", "node_attrs": {"div": 0.13769, "accession": "KT427774", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_RJ055"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["C96G", "T100C", "T155G", "G200T", "A303T", "G317A", "G354A", "A425G", "G428A", "A431G", "C590T", "C641G", "C684A", "T749C", "G770A", "T771G", "G818A", "T824C", "T858C", "G869A", "C926T", "A938G", "T978A", "T979C", "A980T", "C1004T", "T1028G", "T1052C", "C1060G", "A1073G", 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"-6951A", "-6952T", "T6973C", "-6975C", "-6980A", "-6981A", "-6983T", "-6984C", "-6985C", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "T7039G", "A7093G", "C7108T", "A7133G", "C7134T", "T7147A", "A7151G", "A7155C", "G7160A", "T7204C", "A7313C", "A7411T", "C7429T", "C7474T", "G7508A", "T7609C", "G7631T", "A7632T", "G7640A", "C7651T", "T7690G", "G7712A", "G7726A", "G7753A", "T7774C", "A7782C", "A7921T", "A7947G", "C7951A", "G7965A", "C8009G", "A8051C", "A8099C", "T8112G", "T8113C", "A8152T", "G8159T", "A8168G", "G8173T", "T8197G", "T8210C", "A8219G", "T8232C", "T8257A", "A8275G", "T8278G", "C8291A", "A8305G", "T8369A", "G8385A", "G8407A", "C8411A", "A8446G", "A8453G", "C8491A", "A8525G", "G8534A", "C8552T", "A8584T", "T8600C", "T8646C", "C8648T", "C8669T", "G8774A", "C8791A", "A8792G", "T8864G", "C8873G", "G8875A", "A8893G", "A8901T", "G8909A", "A8922G", "A8924G", "A8934C", "A8935T", "T8947A", "C8966T", "A8967C", "A9007G"], "INT": ["E11D", "N17T", "T112I", "T119P", "A124S", "K211R"], "RT-p51": ["T39K", "D123E", "D169E", "I178M", "E207Q", "K211A", "V276I", "Q278H", "P294T", "A297V", "I326V", "I329V", "P345Q", "F346H", "S359A", "L377Q", "S379C", "K395R", "A435V"], "RT-p66": ["T39K", "D123E", "D169E", "I178M", "E207Q", "K211A", "V276I", "Q278H", "P294T", "A297V", "I326V", "I329V", "P345Q", "F346H", "S359A", "L377Q", "S379C", "K395R", "A435V", "Q527E", "K530R", "Q547H", "A554T"], "gp120": ["-3E", "D29N", "A32G", "V37A", "V57I", "E59V", "-107T", "N108V", "-109H", "-110S", "-112A", "-114S", "-115N", "-116S", "-117T", "-118Q", "-119N", "-120S", "-121T", "E122L", "-123Q", "G124E", "A125E", "Q127K", "E136D", "Q142K", "K143E", "H145R", "I153V", "V154I", "V180I", "K203E", "K212G", "E240K", "D241E", "I243V", "I244V", "E262D", "N267S", "H280Q", "T308A", "Q309K", "N311R", "K312E", "E315N", "Q316K", "S323E", "-328A", "K329-", "M345T", "G361K", "T366N", "-373S", "-374T", "-375Q", "-376K", "-377S", "-378N", "-379N", "-384D", "I395M", "T427V", "N433G", "N434G", "-436N", "K472R"], "gp41": ["M4L", "V69I", "E110L", "D113K", "E137K", "N160T", "L206F", "E215G", "G221E", "R236G", "I266L", "I270S", "K283N", "G286W", "T289A", "N298K", "T306A", "V310A", "L330I"], "nef": ["S9R", "A15T", "R22Q", "P25A", "Q35R", "A50D", "Y81F", "Y102H", "P150Q", "D174E", "D177E", "R178K", "K184R", "S187C", "I194V", "K198L", "F202Y"], "p1": ["H9N"], "p17": ["V7I", "A15S", "M31I", "D102E", "Q117K"], "p2": ["N9Q", "V13N"], "p24": ["S14A", "L83T", "T110S", "G183N"], "p6": ["S14I", "D32N", "L35Q", "K42R", "*50W"], "p7": ["V13-", "I24L", "K26R"], "pro": ["K14R", "L19I", "D37E", "D60E", "L63S", "E65D"], "rev": ["E10R", "E11D", "K14Q", "R17S", "A54G", "E68A", "N84T", "D88E", "C89R", "T102S", "G104V", "H107R", "V109L", "*117E"], "tat": ["E2D", "L3I", "T19A", "K24A", "H35P", "W36R", "T39M", "R56P", "T58P", "P59S", "Q60P", "S61G", "S62R", "Q63K", "I64L", "P70S", "N80D", "P81Q", "E86K"], "vif": ["V31I", "F39V", "S46N", "H48N", "E60R", "R93E", "R95K", "I109R", "S116T", "H127Y", "I129V", "Q136P", "A137P", "L153I", "I154L", "K158Q", "T159A", "R181K", "S186N"], "vpr": ["L22I", "N28S", "H45Q", "I63T", "I84T", "A93H", "S96P"], "vpu": ["L4E", "S8G", "A10I", "K38R", "R47I"]}, "labels": {"aa": "INT: E11D, N17T, T112I, T119P, A124S, K211R; RT-p51: T39K, D123E, D169E, I178M, E207Q, K211A, V276I, Q278H, P294T, A297V, I326V, I329V, P345Q, F346H, S359A, L377Q, S379C, K395R, A435V; RT-p66: T39K, D123E, D169E, I178M, E207Q, K211A, V276I, Q278H, P294T, A297V, I326V, I329V, P345Q, F346H, S359A, L377Q, S379C, K395R, A435V, Q527E, K530R, Q547H, A554T; gp120: -3E, D29N, A32G, V37A, V57I, E59V, -107T, N108V, -109H, -110S, -112A, -114S, -115N, -116S, -117T, -118Q, -119N, -120S, -121T, E122L, -123Q, G124E, A125E, Q127K, E136D, Q142K, K143E, H145R, I153V, V154I, V180I, K203E, K212G, E240K, D241E, I243V, I244V, E262D, N267S, H280Q, T308A, Q309K, N311R, K312E, E315N, Q316K, S323E, -328A, K329-, M345T, G361K, T366N, -373S, -374T, -375Q, -376K, -377S, -378N, -379N, -384D, I395M, T427V, N433G, N434G, -436N, K472R; gp41: M4L, V69I, E110L, D113K, E137K, N160T, L206F, E215G, G221E, R236G, I266L, I270S, K283N, G286W, T289A, N298K, T306A, V310A, L330I; nef: S9R, A15T, R22Q, P25A, Q35R, A50D, Y81F, Y102H, P150Q, D174E, D177E, R178K, K184R, S187C, I194V, K198L, F202Y; p1: H9N; p17: V7I, A15S, M31I, D102E, Q117K; p2: N9Q, V13N; p24: S14A, L83T, T110S, G183N; p6: S14I, D32N, L35Q, K42R, *50W; p7: V13-, I24L, K26R; pro: K14R, L19I, D37E, D60E, L63S, E65D; rev: E10R, E11D, K14Q, R17S, A54G, E68A, N84T, D88E, C89R, T102S, G104V, H107R, V109L, *117E; tat: E2D, L3I, T19A, K24A, H35P, W36R, T39M, R56P, T58P, P59S, Q60P, S61G, S62R, Q63K, I64L, P70S, N80D, P81Q, E86K; vif: V31I, F39V, S46N, H48N, E60R, R93E, R95K, I109R, S116T, H127Y, I129V, Q136P, A137P, L153I, I154L, K158Q, T159A, R181K, S186N; vpr: L22I, N28S, H45Q, I63T, I84T, A93H, S96P; vpu: L4E, S8G, A10I, K38R, R47I"}}}, {"name": "KU749395", "node_attrs": {"div": 0.14237, "accession": "KU749395", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "DEMF110BR015"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["C96A", "G121T", "T201C", "-304T", "-305T", "T378C", "C379A", "A386G", "C435T", "G474A", "C507A", "G519A", "A521T", "C525T", "A548G", "T549A", "A571T", "C583T", "A619G", "G651A", "A663G", "C669A", "G677A", "A680G", "A697C", "C698A", "-704A", "G716-", "G743A", "C747A", "A755G", "C767T", "T771C", "T774A", "G806A", "A810G", "T861G", "T875C", "T884C", "C890T", "A959G", "T978C", "A998G", "T1040C", "T1046A", "C1175T", "A1205G", "A1208G", "T1296C", "G1313A", "C1362T", "A1415C", "A1464C", "A1474G", "A1492C", "G1498A", "T1514C", "A1601G", "A1607G", "C1613T", "T1676C", "C1680T", "G1697A", "C1714A", "A1733-", "G1734-", "A1735-", "G1736A", "T1741A", "A1742G", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "A1759G", "A1772G", "A1781T", "G1784C", "C1826T", "A1849G", "A1857G", "C1903A", "G1912A", "C1914A", "A2059G", "A2075C", 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"C8106T", "C8119G", "G8170T", "A8180G", "A8193G", "A8258T", "G8269A", "T8278A", "G8288T", "G8323A", "C8336A", "T8375A", "T8387A", "A8388G", "G8393A", "C8406A", "A8409G", "C8412G", "C8413A", "T8414A", "G8432A", "G8441A", "G8454A", "A8455G", "A8456T", "G8458A", "A8459C", "C8460A", "G8462A", "A8494C", "T8498C", "A8519G", "C8543T", "G8588A", "C8595A", "A8597G", "A8660G", "C8715G", "A8716G", "G8717C", "C8751T", "G8787A", "A8788G", "A8805G", "A8812C", "C8835T", "G8848A", "A8882C", "A8887G", "A8892G", "C8921T", "T8939C", "G8942A", "A8950T", "G8955A", "A8956G", "A8967T", "G9015T", "T9108C", "T9115C", "C9181A"], "INT": ["L84I", "I135V", "G163H", "F181L", "T206S", "I218T", "I251L", "D270H"], "RT-p51": ["E6N", "K20R", "T35K", "T39A", "D121Y", "K122E", "I142V", "C162Y", "T173V", "T200A", "I202V", "K275Q", "A297T", "G333E", "Q334H", "M357I", "L377M", "I382L", "K390R"], "RT-p66": ["E6N", "K20R", "T35K", "T39A", "D121Y", "K122E", "I142V", "C162Y", "T173V", "T200A", "I202V", "K275Q", "A297T", "G333E", "Q334H", "M357I", "L377M", "I382L", "K390R", "T470M", "Q480H", "E492K", "I559V"], "gp120": ["V10I", "K18R", "N52S", "V56I", "V57E", "E59G", "D66N", "N71D", "T78E", "N102S", "-107I", "N108Y", "-109K", "-110N", "-112T", "-114T", "-115H", "-116N", "-117S", "-118T", "-119L", "-120K", "-121L", "-123P", "I126V", "H145Y", "K150R", "N159G", "N161G", "-162E", "H167N", "K199R", "D202N", "K212R", "E240G", "I249M", "N272S", "S278G", "K300Q", "T308I", "E315T", "Q316R", "K318R", "H324Y", "P326D", "-328N", "K329T", "T330K", "-367V", "-368S", "-369N", "-370D", "-371T", "M398L", "N432S", "N433S", "-436E", "V468I", "K479Q"], "gp41": ["L7V", "F8L", "T25A", "R46K", "G83S", "S101T", "N105S", "Q108Y", "D109N", "E110D", "D113E", "E129D", "R133K", "I135L", "E136Q", "N140S", "K144R", "Q147K", "A151E", "L152F", "A156T", "D163N", "N166S", "V187F", "A189T", "V197A", "L204V", "T208I", "I210T", "S212N", "D217G", "K231N", "D232G", "A243T", "L244V", "H259Q", "F263L", "A267V", "A268V", "D272E", "S293G", "K297R", "I319L", "V329F", "L345I"], "nef": ["I16V", "T23A", "P24R", "A26R", "G29R", "E38S", "R39N", "N51T", "L85M", "Q125G", "D149S", "K155E", "N157T", "S169N", "Q182R", "K184E", "Y203F", "D205S"], "p17": ["A15Q", "D47N", "G62S", "S72T", "Y79F", "A83V", "K95R", "E106K", "K110E", "Q112K", "D121A"], "p2": ["T12V", "V13L"], "p24": ["L6I", "S14P", "L15I", "I27V", "S44A", "S225G"], "p6": ["L1F", "A12E", "E19-", "I21K", "T22I", "P23T", "S24P", "P25S", "-26P", "K27R"], "p7": ["K3R", "Q9P", "R11K"], "pro": ["K20R", "D35E", "P39Q", "I93L"], "rev": ["S8R", "K14R", "V16I", "R17K", "I52V", "S61D", "L78I", "H82N", "I83L", "Q91E", "A108S", "E111G"], "tat": ["L3P", "Q17K", "T19S", "S62N", "V69I", "K71E", "P73S", "S75P", "A77T", "T82A"], "vif": ["F44Y", "E61K", "K63E", "L64I", "I66V", "D78E", "G101D", "I109L", "Q167K"], "vpr": ["H45Y", "N48G", "I60L", "V89G"], "vpu": ["Y3N", "A11E", "V21I", "Y27F", "R35K", "A80G"]}, "labels": {"aa": "INT: L84I, I135V, G163H, F181L, T206S, I218T, I251L, D270H; RT-p51: E6N, K20R, T35K, T39A, D121Y, K122E, I142V, C162Y, T173V, T200A, I202V, K275Q, A297T, G333E, Q334H, M357I, L377M, I382L, K390R; RT-p66: E6N, K20R, T35K, T39A, D121Y, K122E, I142V, C162Y, T173V, T200A, I202V, K275Q, A297T, G333E, Q334H, M357I, L377M, I382L, K390R, T470M, Q480H, E492K, I559V; gp120: V10I, K18R, N52S, V56I, V57E, E59G, D66N, N71D, T78E, N102S, -107I, N108Y, -109K, -110N, -112T, -114T, -115H, -116N, -117S, -118T, -119L, -120K, -121L, -123P, I126V, H145Y, K150R, N159G, N161G, -162E, H167N, K199R, D202N, K212R, E240G, I249M, N272S, S278G, K300Q, T308I, E315T, Q316R, K318R, H324Y, P326D, -328N, K329T, T330K, -367V, -368S, -369N, -370D, -371T, M398L, N432S, N433S, -436E, V468I, K479Q; gp41: L7V, F8L, T25A, R46K, G83S, S101T, N105S, Q108Y, D109N, E110D, D113E, E129D, R133K, I135L, E136Q, N140S, K144R, Q147K, A151E, L152F, A156T, D163N, N166S, V187F, A189T, V197A, L204V, T208I, I210T, S212N, D217G, K231N, D232G, A243T, L244V, H259Q, F263L, A267V, A268V, D272E, S293G, K297R, I319L, V329F, L345I; nef: I16V, T23A, P24R, A26R, G29R, E38S, R39N, N51T, L85M, Q125G, D149S, K155E, N157T, S169N, Q182R, K184E, Y203F, D205S; p17: A15Q, D47N, G62S, S72T, Y79F, A83V, K95R, E106K, K110E, Q112K, D121A; p2: T12V, V13L; p24: L6I, S14P, L15I, I27V, S44A, S225G; p6: L1F, A12E, E19-, I21K, T22I, P23T, S24P, P25S, -26P, K27R; p7: K3R, Q9P, R11K; pro: K20R, D35E, P39Q, I93L; rev: S8R, K14R, V16I, R17K, I52V, S61D, L78I, H82N, I83L, Q91E, A108S, E111G; tat: L3P, Q17K, T19S, S62N, V69I, K71E, P73S, S75P, A77T, T82A; vif: F44Y, E61K, K63E, L64I, I66V, D78E, G101D, I109L, Q167K; vpr: H45Y, N48G, I60L, V89G; vpu: Y3N, A11E, V21I, Y27F, R35K, A80G"}}}]}, {"name": "F1_NODE_0000037", "node_attrs": {"div": 0.09412999999999999, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T154C", "A426T", "C583T", "G689A", "C765T", "T992G", "G1019A", "T1040C", "T1063C", "G1199A", "A1205G", "G1278A", "G1279A", "C1316T", "A1339G", "G1355A", "A1418G", "A1449C", "A1476G", "C1541T", "C1692A", "A1715G", "A1774G", "A1828G", "A1982G", "A2056G", "G2311A", "C2527T", "A2612G", "A2726G", "A2727C", "G2818A", "G2842A", "G3058A", "A3136G", "G3154A", "A3164G", "C3399T", "G3718A", "T3940C", "A4273G", "G4799A", "T4914C", "T5281A", "T5336G", "T5357G", "G5462A", "C5511A", "A5548C", "T5567G", "A5568C", "C5636T", "G5717A", "G5730T", "T5731C", "G5839A", "A5866C", "A5915G", "A5965G", "C5984T", "G6130A", "-6174A", "A6182G", "T6184C", "-6203G", "C6221T", "C6247T", "A6324G", "A6327G", "T6328C", "G6339-", "C6347T", "T6395A", "-6700G", "-6701T", "C6745T", "G6754A", "G6773A", "C6810A", "-6960A", "-6963C", "-6969C", "-6970C", "-6971G", "T7003-", "G7004-", "C7006-", "A7007-", "C7008-", "T7009-", "C7025A", "A7037G", "G7040A", "A7289C", "A7313C", "T7322G", "C7407T", "C7463A", "G7508A", "G7519A", "A7590G", "T7690A", "G7868A", "T8113G", "T8164C", "A8255G", "G8288A", "G8323C", "G8335A", "G8357C", "G8368-", "T8369-", "A8370G", "T8374-", "A8489C", "G8507A", "C8595T", "A8597T", "T8606C", "T8759C", "T8864G", "A8953G", "G9025-"], "RT-p51": ["V135I", "T173A", "K211A", "M357V"], "RT-p66": ["V135I", "T173A", "K211A", "M357V"], "gp120": ["H44Y", "-123S", "N157S", "N158G", "S181T", "K212T", "H280-", "I281-", "-282Q", "-283L", "G307R", "I395V", "V396I", "N433D", "K479Q"], "gp41": ["M4L", "S35F", "V69I", "N96S", "A189T", "V329I", "L340F"], "nef": ["W5C", "V11-", "R49S", "L85F", "D174E", "Q204R"], "p17": ["M31L", "A83V"], "p24": ["H12Y", "H87Q", "M96I", "L111P", "G183N", "K203R"], "p6": ["P5T", "*50W"], "p7": ["S4G"], "pro": ["I62V"], "rev": ["E11D", "Y18A", "C89S"], "tat": ["T58P", "I64S"], "vif": ["Y110H"], "vpr": ["I84M"], "vpu": ["A10V", "R37N", "D78N"]}, "labels": {"aa": "RT-p51: V135I, T173A, K211A, M357V; RT-p66: V135I, T173A, K211A, M357V; gp120: H44Y, -123S, N157S, N158G, S181T, K212T, H280-, I281-, -282Q, -283L, G307R, I395V, V396I, N433D, K479Q; gp41: M4L, S35F, V69I, N96S, A189T, V329I, L340F; nef: W5C, V11-, R49S, L85F, D174E, Q204R; p17: M31L, A83V; p24: H12Y, H87Q, M96I, L111P, G183N, K203R; p6: P5T, *50W; p7: S4G; pro: I62V; rev: E11D, Y18A, C89S; tat: T58P, I64S; vif: Y110H; vpr: I84M; vpu: A10V, R37N, D78N"}}, "children": [{"name": "FJ771008", "node_attrs": {"div": 0.13304, "accession": "FJ771008", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06BR564"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G102A", "G200C", "A224C", "G365C", "T372C", "A398G", "A399C", "A431G", "A438G", "C471A", "T473C", "C503T", "G508A", "A541G", "A571T", "G608A", "G609A", "C747G", "G762A", "T875C", "G987C", "T988C", "G989T", "T1001G", "C1004T", "T1046G", "C1169T", "C1178T", "C1211T", "G1277A", "T1280C", "G1311T", "G1346A", "C1362T", "A1400G", "G1404A", "G1443A", "A1446G", "C1456A", "T1468A", "A1492C", "T1501A", "G1503A", "C1627T", "C1656A", "C1670A", "A1687G", "G1713A", "C1714T", "-1746C", "-1747C", "-1748C", "C1749T", "T1752C", "T1754G", "C1755A", "C1756A", "G1773A", "G1794A", "C1826A", "A1857G", "A1926C", "A1934T", "T1986C", "A2018T", "T2043C", "A2051G", "T2064C", "G2074A", "T2080C", "G2131A", "A2152T", "A2154G", "C2193G", "A2241G", "A2254G", "C2296T", "A2300G", "C2301A", "A2304G", "A2368G", "T2464G", "C2488T", "G2509A", "A2548G", "A2557G", "A2627C", "G2682A", "A2693G", "G2714A", "C2723T", "T2735C", "A2738T", "C2739T", "A2750C", "A2755G", "C2776T", "A2809G", "C2828A", "C2848T", "G2855A", "G2872A", "G2921A", "T2922C", "G2956A", "G3010A", "A3025G", "C3067A", "A3130C", "A3142G", "C3178T", "C3207T", "G3221T", "A3230T", "T3256C", "C3266T", "C3275T", "T3276C", "C3346T", "G3398T", "A3449C", "A3490G", "T3517C", "A3607G", "A3629C", "A3682T", "A3770G", "T3778C", "G3802A", "G3805A", "T3850A", "T3856C", "T3865A", "C3908T", "T3946C", "T3978C", "T4015C", "A4109G", "C4110T", "C4161T", "C4181A", "C4258A", "G4267A", "A4407G", "C4444T", "C4674T", "G4727A", "G4767A", "A4773G", "A4869T", "A4971G", "A5061G", "C5084T", "T5206C", "T5221A", "C5237T", "A5246G", "T5292C", "A5312G", "G5363A", "G5382A", "C5383A", "T5391C", "T5403G", "T5415C", "A5431G", "C5444A", "T5451C", "C5461A", "C5554A", "A5557G", "G5558A", "C5563A", "C5584T", "G5599T", "T5616C", "A5629G", "G5706A", "A5718T", "G5729A", "G5737A", "A5743T", "C5763T", "A5806G", "G5845A", "A5911T", "A5959G", "A6009G", "G6020T", "T6025C", "A6167G", "A6168C", "C6171T", "C6172T", "-6175A", "A6176-", "A6177-", "C6178-", "A6179-", "T6181-", "C6189T", "A6192C", "A6194G", "C6196T", "A6197G", "-6198C", "A6200G", "-6201C", "-6204A", "-6205C", "-6215G", "-6216A", "G6226A", "T6250C", "A6262T", "A6266G", "A6268T", "A6282G", "A6292T", "A6316T", "A6330G", "-6339C", "-6340A", "G6380A", "G6478A", "G6489C", "C6612T", "C6618A", "A6659T", "T6763C", "C6766T", "A6776G", "C6777A", "G6793A", "T6794A", "A6799G", "A6807G", "G6809-", "A6810G", "A6811C", "G6814A", "T6815G", "A6817T", "C6822A", "C6824T", "A6825T", "T6826A", "-6830C", "-6831C", "-6832T", "A6841G", "A6848C", "T6857A", "T6876C", "T6895C", "T6898C", "A6905G", "C6925T", "T6946A", "-6956T", "-6957T", "-6958C", "-6959A", "-6961T", "-6962G", "-6964C", "-6965T", "-6966C", "-6967A", "-6968T", "-6972G", "A6974G", "-6975A", "-6976G", "-6977A", "-6978A", "-6979T", "-6980A", "-6981G", "-6982T", "-6983A", "-6984C", "-6985A", "-6986A", "-6987A", "-6988T", "-6989A", "-6990T", "-6991C", "-6992A", "-6993C", "-6994T", "A7010-", "T7011-", "C7012-", "A7013-", "C7014-", "T7015-", "C7084T", "C7089A", "C7096A", "A7100T", "C7101A", "C7102T", "A7107G", "A7135T", "A7149C", "A7154G", "A7161G", "G7162T", "A7190G", "A7197G", "A7231G", "G7238A", "A7239G", "G7269A", "G7453A", "G7552A", "C7553A", "A7573G", "A7583G", "C7597T", "T7624G", "G7627T", "G7630T", "A7632T", "A7641G", "G7642A", "A7668G", "A7669G", "G7688C", "A7722G", "A7747C", "G7759A", "G7883A", "G7961A", "G7977A", "G7997A", "A7998C", "T8032G", "A8051C", "A8111G", "T8112G", "G8114C", "G8117-", "A8118-", "C8119-", "A8120-", "G8121-", "G8122-", "G8123-", "G8124-", "G8125-", "C8126-", "T8127-", "G8128-", "G8136T", "A8168G", "A8172T", "A8224T", "G8274C", "T8281C", "C8296T", "A8363G", "-8368T", "-8369A", "A8372-", "G8373-", "A8378C", "C8415G", "A8447G", "A8455C", "G8490A", "T8492C", "A8531T", "A8584T", "T8585C", "G8588A", "C8609T", "T8640C", "A8660G", "T8740C", "A8744G", "A8746T", "A8750C", "C8775T", "A8794G", "A8851T", "G8871C", "A8874G", "G8905A", "C8921T", "A8922C", "A8952T", "A8954G", "-9025T", "A9027G", "C9028T", "T9073C", "A9135G", "C9181T"], "INT": ["D25E", "L68S", "T112V", "A129V", "Q136K", "K211R"], "RT-p51": ["K20R", "A33G", "K49R", "T69D", "K70R", "D123E", "I178L", "G196E", "T200A", "E207K", "F214L", "T215F", "K219Q", "Q245K", "V254I", "V276T", "D324E", "A371V", "A376S", "S379C", "L394S", "A435L"], "RT-p66": ["K20R", "A33G", "K49R", "T69D", "K70R", "D123E", "I178L", "G196E", "T200A", "E207K", "F214L", "T215F", "K219Q", "Q245K", "V254I", "V276T", "D324E", "A371V", "A376S", "S379C", "L394S", "A435L", "K452Q", "K512Q", "E529D", "I559V"], "gp120": ["-3D", "E4N", "N5-", "E19D", "T21A", "N52S", "V56L", "N105A", "-106L", "-107K", "N108E", "E136D", "R138G", "K143R", "N159S", "S160N", "N161S", "-162T", "A176T", "A253V", "T255N", "T269S", "T308E", "L314I", "K318R", "N327-", "K332Q", "S335T", "L341P", "R351G", "D365S", "-367N", "T385-", "A412E", "N414K", "T416Y", "N418S", "N434T", "-436G", "N446D", "K448R", "E462R"], "gp41": ["L7V", "L84I", "T94A", "Q108H", "E110V", "D113G", "K122R", "E129Q", "N140S", "E148D", "V194I", "E220K", "G225E", "D232T", "I270G", "V271L", "D272-", "R273-", "G274-", "L275-", "G278V", "T289A", "Q290L", "R324T"], "nef": ["S9I", "I10V", "P25A", "E38A", "A50T", "E63D", "Y81F", "Y135F", "E151G", "Q170L", "D177H", "R178G", "R188H", "I194L"], "p1": ["H9N"], "p17": ["I35V", "L46I", "R58Q", "Q69R", "Y79F", "V92I"], "p2": ["A7-", "N9A", "-10H", "T12N"], "p24": ["L6V", "V11I", "V86P", "A194S"], "p6": ["N3S", "A12M", "-26K", "D32S", "A39T"], "p7": ["M1K", "Q9P", "I12N", "V13I", "A54V"], "pro": ["L10M", "K20R", "K43T", "M46L", "L63P", "T74S", "V82A", "I85V", "M89T"], "rev": ["A15T", "R38Q", "R50N", "S62A", "E68A", "D88G", "S89A", "Q91E", "G92-", "T93-", "E94-", "E95-", "S106P", "H107R"], "tat": ["L3I", "D9E", "T19A", "T23N", "R29K", "Y35H", "Q60K", "S61D", "Q63K", "P70S"], "vif": ["H30Y", "E61K", "K63E", "R95W", "K128R", "I129V", "T159A"], "vpr": ["H45Y", "N48D", "I63T", "I70V", "A93N", "S96P"], "vpu": ["S8G", "R41N", "E44K", "I46L", "M71V"]}, "labels": {"aa": "INT: D25E, L68S, T112V, A129V, Q136K, K211R; RT-p51: K20R, A33G, K49R, T69D, K70R, D123E, I178L, G196E, T200A, E207K, F214L, T215F, K219Q, Q245K, V254I, V276T, D324E, A371V, A376S, S379C, L394S, A435L; RT-p66: K20R, A33G, K49R, T69D, K70R, D123E, I178L, G196E, T200A, E207K, F214L, T215F, K219Q, Q245K, V254I, V276T, D324E, A371V, A376S, S379C, L394S, A435L, K452Q, K512Q, E529D, I559V; gp120: -3D, E4N, N5-, E19D, T21A, N52S, V56L, N105A, -106L, -107K, N108E, E136D, R138G, K143R, N159S, S160N, N161S, -162T, A176T, A253V, T255N, T269S, T308E, L314I, K318R, N327-, K332Q, S335T, L341P, R351G, D365S, -367N, T385-, A412E, N414K, T416Y, N418S, N434T, -436G, N446D, K448R, E462R; gp41: L7V, L84I, T94A, Q108H, E110V, D113G, K122R, E129Q, N140S, E148D, V194I, E220K, G225E, D232T, I270G, V271L, D272-, R273-, G274-, L275-, G278V, T289A, Q290L, R324T; nef: S9I, I10V, P25A, E38A, A50T, E63D, Y81F, Y135F, E151G, Q170L, D177H, R178G, R188H, I194L; p1: H9N; p17: I35V, L46I, R58Q, Q69R, Y79F, V92I; p2: A7-, N9A, -10H, T12N; p24: L6V, V11I, V86P, A194S; p6: N3S, A12M, -26K, D32S, A39T; p7: M1K, Q9P, I12N, V13I, A54V; pro: L10M, K20R, K43T, M46L, L63P, T74S, V82A, I85V, M89T; rev: A15T, R38Q, R50N, S62A, E68A, D88G, S89A, Q91E, G92-, T93-, E94-, E95-, S106P, H107R; tat: L3I, D9E, T19A, T23N, R29K, Y35H, Q60K, S61D, Q63K, P70S; vif: H30Y, E61K, K63E, R95W, K128R, I129V, T159A; vpr: H45Y, N48D, I63T, I70V, A93N, S96P; vpu: S8G, R41N, E44K, I46L, M71V"}}}, {"name": "KJ849782", "node_attrs": {"div": 0.14351999999999998, "accession": "KJ849782", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE107"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G47A", "T49A", "A50G", "A54C", "C57A", "G62A", "A66G", "G68-", "C69-", "C70-", "T71-", "C72-", "A73-", "A74-", "T75-", "A76-", "A77-", "A78-", "G79-", "C80-", "T81-", "T82-", "G83-", "C84-", "C85-", "T86-", "T87-", "G88-", "A89-", "G90-", "T91-", "G92-", "C93-", "T94-", "T95-", "C96-", "A97-", "T201C", "A263T", "A303T", "G354A", "A386G", "A418G", "G424A", "G455A", "G474A", "T476C", "T495C", "A500G", "C503A", "A510C", "C531T", "T539C", "C558T", "A576G", "G579A", "T594C", "T596G", "C641T", "C669A", "A678G", "T695A", "A697C", "C698A", "A699G", "A700C", "A701G", "G703C", "-704A", "-705G", "-706C", "-707T", "-708G", "-709A", "-710C", "-711A", "-712A", "-713A", "-714G", "-715G", "C767T", "A810G", "C944G", "C950T", "A995G", "G1016A", "T1046C", "A1074G", "G1101A", "G1192A", "T1237A", "A1337G", "C1342G", "C1440A", "A1441G", "C1444T", "T1451G", "A1474G", "G1495A", "C1535T", "A1536C", "A1543G", "G1588A", "C1598T", "A1607G", "A1657G", "G1697A", "C1714A", "A1742G", "C1744A", "C1756T", "G1766A", "A1772G", "T1783A", "C1795T", "G1858A", "T1864G", "C1903T", "A1927G", "A1980G", "C2003T", "G2038A", "G2134A", "A2221G", "A2293G", "T2323C", "T2335C", "T2353C", "G2362A", "A2380G", "G2392A", "T2464C", "C2500T", "A2569C", "C2575T", "T2579A", "A2713G", "A2761G", "A2764G", "C2845A", "G2869A", "G2902A", "G2914A", "A2929T", "T2935C", "T2944G", "G2947A", "G3019A", "A3027G", "A3028G", "G3043A", "T3059A", "A3079G", "A3080G", "A3096T", "A3103G", "A3124G", "C3140T", "A3196G", "T3225A", "C3232T", "T3253C", "T3276A", "C3352T", "C3394T", "A3430G", "T3431G", "G3442C", "C3500T", "G3529A", "C3533G", "T3545A", "A3578G", "C3653A", "A3666T", "A3684G", "C3712T", "A3715G", "A3744G", "C3773T", "A3808T", "A3815T", "A3816G", "A3817G", "A3825C", "T3840C", "A3862C", "G3901A", "T3970C", "T4005C", "A4063G", "A4071T", "A4076C", "C4079T", "A4087G", "A4130C", "G4252A", "T4388G", "T4412C", "C4501T", "A4531G", "A4552G", "C4569T", "G4573A", "G4689A", "G4696A", "A4697T", "T4701G", "C4724T", "G4737A", "C4757T", "G4764A", "C4771A", "A4781G", "T4820A", "G4856A", "A4858T", "G4871T", "G4949A", "A4950C", "C4965T", "G4969A", "A5045G", "G5049A", "C5085A", "C5102T", "A5119G", "A5122G", "C5125T", "G5143A", "A5186C", "T5188C", "A5191G", "T5203C", "A5225G", "T5260C", "A5284C", "C5334A", "A5335G", "G5336A", "C5361-", "A5362-", "G5363-", "A5364-", "G5365-", "A5366-", "A5367-", "G5368-", "A5369-", "G5370-", "T5371-", "A5372-", "T5384C", "C5479T", "G5543A", "A5544G", "C5551T", "A5555T", "A5556C", "G5581A", "T5611A", "C5612A", "A5613T", "G5619A", "T5620-", "T5621-", "A5622-", "C5624T", "A5626G", "G5635A", "C5653A", "C5663T", "A5665G", "T5684C", "A5689T", "A5718C", "A5720G", "G5737C", "G5747T", "T5778C", "-5812C", "-5813T", "-5814T", "-5815T", "-5816T", "-5817T", "-5818A", "-5819T", "C5824-", "C5825-", "T5826-", "T5827-", "T5828-", "T5829-", "A5830-", "T5831-", "-5861A", "-5862C", "-5863A", "T5870C", "G5872C", "C5878A", "T5899A", "C5916A", "A5956C", "G6020A", "A6022G", "G6023C", "T6024A", "G6050A", "T6101C", "G6121A", "T6127C", "T6148C", "A6173C", "-6175G", "A6177G", "-6180A", "A6186C", "A6188G", "A6191-", "A6192-", "T6193-", "A6194-", "A6195-", "C6196-", "A6197-", "T6199-", "A6200-", "C6202T", "-6204G", "-6205G", "A6206C", "C6208A", "C6209A", "A6213C", "G6214A", "-6215C", "-6216C", "A6217C", "C6238T", "G6267A", "G6269A", "C6287T", "A6292C", "A6303G", "A6320G", "A6333G", "G6336C", "A6338-", "C6364A", "T6460G", "A6464G", "G6481A", "A6484T", "C6487T", "G6490C", "C6499T", "G6533A", "G6547A", "G6572A", "T6590G", "A6599C", "A6622C", "G6649A", "C6713A", "G6714A", "A6715G", "T6721C", "G6725A", "G6767A", "G6797A", "A6798G", "A6799C", "A6801G", "A6818G", "A6819G", "A6820G", "G6821T", "C6823T", "T6829C", "-6833C", "-6834C", "C6856T", "C6862T", "T6863G", "A6910G", "T6916C", "G6936A", "-6947G", "-6948A", "-6949C", "-6950A", "-6951C", "-6952A", "-6953G", "-6954G", "-6955C", "-6956A", "-6957A", "-6958T", "-6959G", "-6961C", "-6962A", "-6964T", "-6965A", "-6966G", "-6967T", "-6968G", "-6972C", "-6975C", "-6976T", "G7026A", "C7064A", "G7065A", "A7070G", "G7076A", "C7078T", "A7097C", "A7100G", "A7113C", "A7148C", "T7150G", "A7151G", "T7153C", "G7160-", "A7163T", "C7164A", "T7165C", "C7170T", "A7216G", "G7293A", "A7294G", "G7295C", "A7312G", "A7315G", "G7322A", "T7386C", "T7400G", "A7428G", "C7433T", "T7462C", "A7507G", "G7543A", "T7575G", "T7622A", "G7628A", "G7642T", "G7660A", "A7689C", "A7732C", "G7777A", "C7801T", "G7831A", "A7921T", "A7947G", "A7995G", "A8011C", "A8029G", "G8030A", "C8048T", "C8065T", "G8113A", "G8117A", "G8134A", "G8144A", "C8165A", "T8176C", "A8219G", "G8231A", "T8232C", "G8245A", "G8261A", "A8282G", "G8283C", "C8286T", "C8291T", "T8292G", "A8294C", "T8302C", "G8317A", "C8323T", "A8326G", "C8357T", "A8364-", "G8365-", "T8366-", "A8367-", "T8371A", "A8372G", "G8373A", "-8374A", "T8375A", "G8377A", "C8383A", "T8384A", "G8407A", "C8412T", "G8421-", "C8422-", "A8423-", "G8424A", "A8426G", "G8429A", "A8438C", "T8440C", "A8455G", "C8480T", "C8489T", "T8505G", "G8554A", "A8555G", "T8567C", "A8580C", "C8590G", "C8648T", "G8666T", "C8720T", "A8739G", "C8771T", "G8798T", "A8870G", "C8873A", "G8875A", "A8882G", "G8888A", "A8893G", "G8917A", "C8927A", "A8930G", "A8934G", "C8948T", "C8960G", "T8961G", "G8962A", "A8963C", "C8964T", "A8965G", "A8967T", "A8980C", "G8981A", "G8983A", "C8985G", "T8986A", "T8987A", "A8991T", "C8992-", "T8993-", "G8994-", "G8995-", "G8996-", "G8997-", "A8998-", "C8999-", "T9000-", "T9001-", "T9002-", "C9003-", "C9004-", "A9005-", "G9006-", "A9007-", "G9008-", "G9010-", "G9011-", "C9012-", "G9013-", "G9015-", "G9016-", "C9017-", "C9018-", "A9019-", "G9020-", "G9021-", "G9022-", "C9023-", "G9024-", "G9026-", "A9027-", "C9028-", "T9029-", "G9030-", "G9032A", "G9035T", "G9038C", "C9039T", "T9040G", "C9041A", "A9042C", "C9043A", "C9045A", "T9046G", "C9047A", "T9051A"], "INT": ["E11D", "K14W", "N17T", "M22T", "V77A", "Y99F", "I101L", "T119P", "S205A", "A265V"], "RT-p51": ["C162S", "D250E", "Q278H", "K311R", "S322T", "I329V", "Q334L", "L377Q", "L394Q", "A435V"], "RT-p66": ["C162S", "D250E", "Q278H", "K311R", "S322T", "I329V", "Q334L", "L377Q", "L394Q", "A435V", "S446A", "E449D", "Q480E", "L484I", "I495V", "Q520K", "Q524L", "K530R", "K550R"], "gp120": ["-3T", "E4D", "T21D", "E34D", "V56M", "V57H", "D66N", "N105-", "N108-", "-111N", "-112T", "R138K", "D139N", "H145Y", "K150R", "I156V", "N161T", "D202E", "K204E", "T212S", "V227I", "E240K", "S246A", "I249L", "R287K", "A291T", "V305I", "E315S", "Q316R", "-319E", "K322G", "S337A", "G361E", "-382G", "-383N", "-384D", "R391K", "R404K", "M406V", "A408T", "I415L", "T416A", "N420T", "N432Q", "T439I", "K472R", "R480K", "E481Q"], "gp41": ["L7M", "V28A", "L33V", "N42S", "L91R", "S107T", "D109K", "E129A", "E143D", "M176I", "L206F", "E215G", "K231R", "A243T", "D272N", "V281I", "L288I", "T306A", "V310T", "E320K", "R327A", "A328V", "L330C", "N331H"], "nef": ["S8E", "S9K", "I10E", "G12-", "P14Q", "R22Q", "P24S", "A27K", "E28G", "G29-", "V33A", "E38G", "L55V", "R71K", "T80P", "A83G", "E108D", "T133V", "E152D", "D177E", "R178K", "K184R", "R192K", "K198E", "C206W", "*207D"], "p1": ["H9R"], "p17": ["V7I", "K28R", "R30K", "D47N", "S54P", "K59Q", "P66S", "L75F", "T81A", "V82I", "Y87Q", "Q112K", "T115A", "D121A", "K122A", "G123A", "-124A", "-125D", "-126K", "-127G"], "p2": ["Q6R", "A7V", "N9Q"], "p24": ["I27V", "D71E", "I115V", "V124I", "R154K", "F169Y", "A204G", "S225G"], "p6": ["A12E", "I21M", "T22N", "P23-", "S24P", "P25S", "-26L", "D32G", "L35Q", "A39V"], "p7": ["K3R", "R10K", "I24L", "K26R", "R41K"], "pro": ["N61S", "H69Y"], "rev": ["E10R", "K14S", "I55L", "S61D", "P67L", "L73F", "T93A", "G96R", "S99N", "S106H"], "tat": ["L3P", "R29Q", "R56Q", "P59S", "Q60L", "V69I", "N80D"], "vif": ["A35T", "R37N", "F39V", "V51I", "E60K", "A62D", "D78E", "Q91L", "R95S", "K122Q", "H127Y", "A155T", "Q167K", "Q178R", "E179G", "T180I", "S186N"], "vpr": ["N28H", "S41G", "Q77R", "Q86-", "R87-", "R88-", "V89-"], "vpu": ["S2N", "L5V", "A6-", "I7V", "V10I", "L16I", "A19V", "I20V", "V26A", "I28L", "K38R", "R41S", "E44Q", "R47I", "P73L", "N80D"]}, "labels": {"aa": "INT: E11D, K14W, N17T, M22T, V77A, Y99F, I101L, T119P, S205A, A265V; RT-p51: C162S, D250E, Q278H, K311R, S322T, I329V, Q334L, L377Q, L394Q, A435V; RT-p66: C162S, D250E, Q278H, K311R, S322T, I329V, Q334L, L377Q, L394Q, A435V, S446A, E449D, Q480E, L484I, I495V, Q520K, Q524L, K530R, K550R; gp120: -3T, E4D, T21D, E34D, V56M, V57H, D66N, N105-, N108-, -111N, -112T, R138K, D139N, H145Y, K150R, I156V, N161T, D202E, K204E, T212S, V227I, E240K, S246A, I249L, R287K, A291T, V305I, E315S, Q316R, -319E, K322G, S337A, G361E, -382G, -383N, -384D, R391K, R404K, M406V, A408T, I415L, T416A, N420T, N432Q, T439I, K472R, R480K, E481Q; gp41: L7M, V28A, L33V, N42S, L91R, S107T, D109K, E129A, E143D, M176I, L206F, E215G, K231R, A243T, D272N, V281I, L288I, T306A, V310T, E320K, R327A, A328V, L330C, N331H; nef: S8E, S9K, I10E, G12-, P14Q, R22Q, P24S, A27K, E28G, G29-, V33A, E38G, L55V, R71K, T80P, A83G, E108D, T133V, E152D, D177E, R178K, K184R, R192K, K198E, C206W, *207D; p1: H9R; p17: V7I, K28R, R30K, D47N, S54P, K59Q, P66S, L75F, T81A, V82I, Y87Q, Q112K, T115A, D121A, K122A, G123A, -124A, -125D, -126K, -127G; p2: Q6R, A7V, N9Q; p24: I27V, D71E, I115V, V124I, R154K, F169Y, A204G, S225G; p6: A12E, I21M, T22N, P23-, S24P, P25S, -26L, D32G, L35Q, A39V; p7: K3R, R10K, I24L, K26R, R41K; pro: N61S, H69Y; rev: E10R, K14S, I55L, S61D, P67L, L73F, T93A, G96R, S99N, S106H; tat: L3P, R29Q, R56Q, P59S, Q60L, V69I, N80D; vif: A35T, R37N, F39V, V51I, E60K, A62D, D78E, Q91L, R95S, K122Q, H127Y, A155T, Q167K, Q178R, E179G, T180I, S186N; vpr: N28H, S41G, Q77R, Q86-, R87-, R88-, V89-; vpu: S2N, L5V, A6-, I7V, V10I, L16I, A19V, I20V, V26A, I28L, K38R, R41S, E44Q, R47I, P73L, N80D"}}}]}]}, {"name": "F1_NODE_0000038", "node_attrs": {"div": 0.08299, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A1528C", "A5225G", "G5463A", "G5619A", "C6202-", "T6331C", "-6340C", "-6689A", "-6691A", "C6810G", "C6822T", "-6991C", "G7340A", "A7342C", "C7801T", "G8117A"], "gp41": ["G13S", "K231R", "D272N", "V318I"], "tat": ["R56H"], "vif": ["F39V"], "vpr": ["S41G"]}, "labels": {"aa": "gp41: G13S, K231R, D272N, V318I; tat: R56H; vif: F39V; vpr: S41G"}}, "children": [{"name": "F1_NODE_0000039", "node_attrs": {"div": 0.08854999999999999, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T201C", "A398G", "A431G", "C471A", "C525T", "A595T", "G2311A", "T3380C", "T3431G", "C4674T", "G4871C", "G4969A", "G5543A", "A5556G", "A5613C", "C5653T", "T5684C", "-6175T", "A6182G", "T6325C", "G6451A", "G6481A", "C6692T", "-6693A", "A6695T", "T6722C", "T6735A", "G6793A", "A6801G", "A6807G", "G6809-", "G6814A", "T6815G", "A6817T", "C6824T", "A6825C", "T6826A", "-6830C", "-6831C", "-6832C", "-6993C", "-6997A", "-7002A", "A7032G", "C7089A", "G7160-", "A7428G", "A7532C", "C7658G", "T8369C", "A8409G", "C8595T", "A8597C", "A8604G", "T8606C", "C8607T", "A8608T", "A8739G", "A8887T", "C8904A", "T8914G"], "RT-p66": ["S446A"], "gp120": ["N159S", "H280Y", "Y290H", "A291T", "N327-", "K393R", "A412E"], "gp41": ["N42S", "M54L", "K77Q", "D109E", "Q119E"], "nef": ["T23A", "L85F", "S88G", "H89F", "I133V", "K182M", "R188S", "L191R"], "p17": ["L46I", "Y87F"], "rev": ["K14R"], "vif": ["H30Y", "R95S"], "vpu": ["V26A"]}, "labels": {"aa": "RT-p66: S446A; gp120: N159S, H280Y, Y290H, A291T, N327-, K393R, A412E; gp41: N42S, M54L, K77Q, D109E, Q119E; nef: T23A, L85F, S88G, H89F, I133V, K182M, R188S, L191R; p17: L46I, Y87F; rev: K14R; vif: H30Y, R95S; vpu: V26A"}}, "children": [{"name": "FJ771010", "node_attrs": {"div": 0.13518999999999998, "accession": "FJ771010", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07BR844"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G206A", "G265A", "A301T", "A390G", "G395A", "G424A", "G455A", "T495G", "A509G", "A511G", "C531T", "C536T", "A569G", "A576G", "G607A", "G620A", "C641A", "A666T", "A676G", "-704A", "-705G", "-706C", "-707A", "-708A", "-709C", "-710C", "-711A", "-712G", "-713T", "G716-", "G717-", "T718-", "C719-", "A720-", "G721-", "T722-", "A810G", "A815G", "T827C", "A836G", "G869A", "T875C", "A899G", "A998G", "C1004T", "T1046C", "C1118A", "G1192A", "A1193G", "A1240G", "T1262C", "A1263T", "G1277A", "G1278A", "G1279A", "A1293T", "T1334C", "A1340G", "C1350T", "G1394A", "G1404A", "A1418G", "A1442G", "G1452A", "A1455G", "G1503A", "C1528A", "T1547C", "G1588A", "A1592G", "C1615A", "A1642G", "T1681C", "C1688A", "G1691A", "A1696C", "G1697A", "A1743G", "G1766A", "C1787T", "C1826G", "T1827G", "A1839G", "G1848A", "A1857C", "C1903T", "A1920G", "G1972A", "A1993T", "G2038A", "A2056T", "T2080C", "C2199T", "A2200G", "A2233G", "A2241G", "C2281A", "G2294A", "A2304G", "T2323C", "A2329G", "A2380G", "T2383C", "A2404C", "G2417A", "G2422A", "A2498C", "T2579A", "T2602C", "T2632G", "C2638T", "A2680T", "G2686A", "A2693G", "G2704T", "C2739T", "T2740C", "A2750G", "A2807G", "A2808G", "T2899C", "A2911C", "G3019A", "A3028G", "T3045C", "G3058C", "A3103G", "A3142G", "C3175T", "T3187C", "A3199G", "C3224G", "G3307T", "G3427A", "C3444A", "C3445T", "A3451G", "T3505A", "G3529A", "T3541C", "T3545A", "T3559C", "A3562T", "A3629C", "T3644A", "G3731A", "A3770G", "C3773T", "T3924G", "T3946C", "T3962C", "G3989A", "G4021A", "C4025A", "T4039C", "T4117C", "C4141T", "G4148A", "G4150A", "T4153C", "G4255A", "G4268A", "A4399G", "A4402G", "A4625G", "G4677A", "T4679C", "A4693G", "T4701G", "G4719C", "G4727A", "G4764A", "G4766T", "A4773G", "A4804T", "G4865A", "G4870A", "G4949A", "A5099G", "A5122G", "T5170C", "C5227A", "C5237T", "C5242A", "A5284C", "T5294C", "T5354C", "C5383A", "T5398C", "A5463C", "C5479T", "T5515C", "A5535G", "G5561A", "T5567C", "C5584T", "T5611C", "C5613T", "T5614G", "A5626G", "A5655C", "G5668A", "C5704G", "G5712A", "G5747T", "A5748T", "A5806G", "G5845A", "C5851T", "-5861A", "-5862A", "-5863A", "A5866G", "C5924T", "A5956C", "T5964C", "C5989T", "G6029A", "T6109A", "G6170T", "-6171A", "-6174A", "-6180C", "C6183A", "A6185T", "T6187C", "C6189A", "C6190T", "A6195G", "-6198C", "C6207A", "C6208A", "C6209A", "T6210C", "G6211A", "A6213T", "G6214A", "-6215A", "-6216T", "A6217G", "G6220T", "C6221G", "C6222T", "C6233A", "C6238T", "T6250A", "G6253A", "C6275A", "A6276C", "G6277T", "C6278A", "A6279G", "G6280A", "A6281G", "T6285C", "C6287G", "A6288C", "T6289G", "A6304T", "T6306C", "A6320C", "A6329G", "C6331G", "C6343T", "A6367T", "A6371C", "A6406C", "T6445A", "A6464C", "G6475A", "G6478A", "C6482T", "G6532A", "A6538C", "G6569A", "G6572C", "C6591G", "A6712G", "G6714A", "A6715T", "G6732A", "A6776G", "C6777A", "T6794G", "G6797C", "C6825T", "A6848G", "A6849T", "A6850G", "T6857C", "C6858A", "C6919T", "C6925T", "G6935A", "G6936A", "-6982G", "-6983A", "-6984C", "-6985A", "-6986C", "-6987A", "-6988G", "-6989A", "-6990C", "-6992C", "-6994T", "-6995T", "-6996C", "-7005A", "C7006A", "G7040A", "A7043G", "A7044G", "C7045G", "T7049G", "A7053G", "T7059A", "T7071C", "G7079C", "C7084T", "T7086C", "A7090T", "A7107G", "C7108T", "A7111G", "C7124T", "T7131G", "A7140G", "A7151G", "A7152G", "A7163T", "C7164A", "A7210G", "A7246G", "A7258T", "G7259A", "C7264T", "G7269A", "A7276G", "G7307C", "A7312C", "A7315G", "T7322G", "T7330C", "C7342T", "G7391A", "T7400C", "T7406G", "G7459A", "C7544T", "T7555C", "C7561T", "T7575G", "C7597T", "C7603T", "C7625T", "G7627T", "G7631A", "A7632C", "G7633A", "G7642C", "A7668G", "G7672A", "A7689G", "A7710C", "A7744G", "G7769A", "G7773A", "T7774C", "G7790A", "T7796A", "G7807A", "T7864C", "C7874A", "A7995G", "T8007G", "C8009A", "G8017C", "A8029G", "G8030A", "C8031G", "T8032C", "G8036A", "C8065T", "A8098G", "C8103T", "A8120C", "G8123A", "G8124T", "G8125C", "G8130C", "G8131A", "C8145T", "C8153T", "T8154A", "A8168G", "G8170A", "T8210C", "C8213T", "A8228G", "A8258C", "T8266C", "G8269A", "C8293A", "A8342T", "A8363G", "C8382T", "A8396G", "T8414C", "G8424A", "A8455G", "A8457C", "G8458A", "A8489T", "T8492C", "A8537G", "G8561A", "C8597T", "A8636T", "A8663G", "A8780G", "G8787A", "A8806G", "T8832C", "G8846A", "A8918G", "G8933A", "T8939C", "G8942A", "C8952A", "A8954G", "G8955A", "T8972A", "A8991G", "G9033-", "C9041T", "C9068T", "C9075T", "T9084A"], "INT": ["M50R", "V72I", "L84I", "A125T", "V165I", "I208M", "R284G"], "RT-p51": ["T35M", "K49R", "D67N", "K70R", "K103N", "V108I", "V135L", "C162S", "T200A", "E203D", "T215I", "K219E", "K238G", "V317A", "L377V", "E404D"], "RT-p66": ["T35M", "K49R", "D67N", "K70R", "K103N", "V108I", "V135L", "C162S", "T200A", "E203D", "T215I", "K219E", "K238G", "V317A", "L377V", "E404D", "T450N", "L484I", "K512Q", "L517I", "E546K", "I559V"], "gp120": ["-3K", "E34D", "V37A", "E59K", "D85E", "-106Y", "-107N", "-109T", "-110D", "-111Y", "-112N", "-113N", "-114S", "-115T", "E122L", "-123K", "Q127K", "N132K", "M133I", "Q141T", "Q142R", "K143E", "V144A", "H145A", "K150N", "L151P", "I156L", "N158K", "S160E", "-162S", "I173L", "K204Q", "P210S", "E239K", "E240Q", "S246C", "I281L", "R287H", "T292E", "G293N", "D294I", "T308E", "L314V", "E315-", "V317R", "K318V", "-328N", "K332V", "S335Q", "G361K", "D365-", "T366-", "V396I", "N397G", "W399G", "Q400R", "V402E", "M406T", "A409P", "I411T", "E412D", "N418S", "L426W", "D429G", "N433G", "A469T"], "gp41": ["V2I", "L7V", "A30T", "S35A", "L81F", "L91R", "Q108Y", "E110T", "K122R", "E129G", "E136A", "A156T", "S157N", "D163N", "S165T", "L191I", "V235G", "A243S", "V245I", "A267V", "G274I", "R276T", "A281V", "L284Y", "T289A", "L304F", "I309V", "I319L"], "nef": ["P14S", "E28K", "E38G", "R39Q", "R49S", "E98D", "D149N", "K155R", "M168I", "Q204K", "D205N"], "p1": ["K4R"], "p17": ["I19V", "R30K", "S54A", "K59R", "P66S", "T81A", "R91K", "D102E", "S111C", "-124A", "-125T", "V128-"], "p2": ["-10T", "T12V", "V13-"], "p24": ["I27V", "R154K", "K170R", "T178S", "G183N", "T188S", "P207S"], "p6": ["L1P", "N3K", "P5L", "T22A", "*50E"], "p7": ["V13I", "R41K", "T50N"], "pro": ["L10G", "K14R", "G17E", "K20T", "K41R", "E65D"], "rev": ["D7G", "V16I", "Y18H", "A54E", "E57Q", "S61E", "S62P", "C63Y", "L73F", "N84D", "Q91P", "G92D", "T93P", "E94D", "E95K", "T102I", "H107R", "A108T"], "tat": ["L3I", "Y47H", "S62N", "I64T", "P70S"], "vif": ["V31I", "K36R", "E45Q", "E60N", "K63E", "H73L", "S95N", "E179G"], "vpr": ["H45Y", "Q77H", "A93D"], "vpu": ["S2P", "Y3D", "I7V", "L16F", "V21I", "L33V", "R47I", "M71V"]}, "labels": {"aa": "INT: M50R, V72I, L84I, A125T, V165I, I208M, R284G; RT-p51: T35M, K49R, D67N, K70R, K103N, V108I, V135L, C162S, T200A, E203D, T215I, K219E, K238G, V317A, L377V, E404D; RT-p66: T35M, K49R, D67N, K70R, K103N, V108I, V135L, C162S, T200A, E203D, T215I, K219E, K238G, V317A, L377V, E404D, T450N, L484I, K512Q, L517I, E546K, I559V; gp120: -3K, E34D, V37A, E59K, D85E, -106Y, -107N, -109T, -110D, -111Y, -112N, -113N, -114S, -115T, E122L, -123K, Q127K, N132K, M133I, Q141T, Q142R, K143E, V144A, H145A, K150N, L151P, I156L, N158K, S160E, -162S, I173L, K204Q, P210S, E239K, E240Q, S246C, I281L, R287H, T292E, G293N, D294I, T308E, L314V, E315-, V317R, K318V, -328N, K332V, S335Q, G361K, D365-, T366-, V396I, N397G, W399G, Q400R, V402E, M406T, A409P, I411T, E412D, N418S, L426W, D429G, N433G, A469T; gp41: V2I, L7V, A30T, S35A, L81F, L91R, Q108Y, E110T, K122R, E129G, E136A, A156T, S157N, D163N, S165T, L191I, V235G, A243S, V245I, A267V, G274I, R276T, A281V, L284Y, T289A, L304F, I309V, I319L; nef: P14S, E28K, E38G, R39Q, R49S, E98D, D149N, K155R, M168I, Q204K, D205N; p1: K4R; p17: I19V, R30K, S54A, K59R, P66S, T81A, R91K, D102E, S111C, -124A, -125T, V128-; p2: -10T, T12V, V13-; p24: I27V, R154K, K170R, T178S, G183N, T188S, P207S; p6: L1P, N3K, P5L, T22A, *50E; p7: V13I, R41K, T50N; pro: L10G, K14R, G17E, K20T, K41R, E65D; rev: D7G, V16I, Y18H, A54E, E57Q, S61E, S62P, C63Y, L73F, N84D, Q91P, G92D, T93P, E94D, E95K, T102I, H107R, A108T; tat: L3I, Y47H, S62N, I64T, P70S; vif: V31I, K36R, E45Q, E60N, K63E, H73L, S95N, E179G; vpr: H45Y, Q77H, A93D; vpu: S2P, Y3D, I7V, L16F, V21I, L33V, R47I, M71V"}}}, {"name": "AY173957", "node_attrs": {"div": 0.10623999999999999, "accession": "AY173957", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 1989.0}, "Strain_name": {"value": "BZ126"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["-280G", "C281-", "T372C", "A426T", "A438G", "G474A", "G508A", "A562G", "G609A", "G667A", "C681A", "C767T", "T774A", "T988C", "T992G", "G1019A", "A1205G", "A1208G", "A1415G", "G1461A", "A1464C", "C1550T", "A1620G", "G1731A", "C1744A", "C1775A", "C1825A", "A1857G", "C1914A", "C1987T", "T2062C", "G2428A", "T2443C", "A2498G", "A2627T", "A2699G", "C2845T", "G2957A", "G2984A", "A3097T", "T3292C", "G3483A", "A3490G", "G3491A", "T3505C", "A3674C", "G3796A", "C3994T", "G3997A", "G4046A", "A4057G", "C4132T", "A4189G", "G4262A", "A4391T", "A4437G", "T4702C", "C4728A", "C4757T", "C4761T", "G4779A", "T4932G", "A4971G", "C5085A", "A5112G", "G5137A", "A5215C", "C5221A", "T5336G", "T5356C", "T5403C", "A5431G", "T5451C", "C5481A", "G5496A", "G5534A", "A5545C", "G5599A", "T5616C", "A5619T", "G5635A", "G5707T", "G5948T", "A6158C", "A6168G", "-6171C", "-6174C", "A6176C", "A6177C", "-6180A", "T6184C", "A6186C", "A6188G", "A6192C", "A6194C", "C6196A", "-6198A", "T6199C", "A6200G", "-6201G", "-6202A", "-6203A", "-6204C", "-6205A", "-6215G", "-6216A", "G6220A", "A6254T", "C6322T", "A6324G", "A6330G", "A6333G", "G6336A", "G6339A", "G6346A", "T6358C", "A6359G", "T6592C", "C6632T", "A6674T", "G6725A", "A6728G", "A6757C", "A6811C", "A6840C", "-6989G", "-6990A", "-6992A", "-6994A", "-6995G", "-6996G", "-6998T", "-6999C", "-7000C", "-7001A", "-7005G", "C7020T", "A7027C", "A7148C", "T7150G", "A7155G", "-7160C", "A7225G", "G7288A", "T7308C", "G7309A", "G7311T", "A7345G", "A7366G", "A7376G", "G7552A", "A7669G", "G7688T", "T7690C", "A7693G", "G7712C", "G7717A", "A7996C", "C7999G", "A8011C", "G8030C", "C8092A", "T8101A", "A8172T", "A8180G", "T8218C", "G8245A", "A8262C", "G8276A", "C8277T", "G8288A", "C8293T", "G8304C", "G8323C", "A8338G", "C8460A", "A8531T", "G8534A", "G8554A", "C8648T", "A8701T", "A8874G", "G9026T", "T9115C"], "INT": ["A91T", "G163R", "T206S", "Q221R"], "RT-p51": ["I178L", "I202V", "A288T", "A297T", "Q334H"], "RT-p66": ["I178L", "I202V", "A288T", "A297T", "Q334H", "R463K", "A466T", "K527Q"], "gp120": ["A32S", "N102H", "N105S", "-106L", "-107K", "N108E", "-123P", "T134S", "N157S", "-162N", "N169D", "L260F", "N274Y", "T292A", "D294K", "Q316R", "K318R", "-328T", "K329-", "-367G", "-368S", "-369N", "-370G", "-371T", "T385-", "P389L", "N432Q", "N434S", "-436Q", "K472R"], "gp41": ["V2A", "G3V", "M4I", "T25A", "D113E", "E129Y", "E137Q", "R231N", "D232E", "A243P", "F263L", "Q290L", "S293G", "E320A", "A325I", "V329I", "R334T", "L340F"], "nef": ["V30E", "V33A", "E63D", "R71K", "Y120F", "R178G", "D205G"], "p17": ["M31L", "I35V", "D47N", "R58Q", "K76R", "V92I", "S111N", "Q116K"], "p2": ["V13I", "M14L"], "p24": ["L15I", "V86A", "H87Q", "M96I", "S225G"], "p6": ["G18R", "T22N", "D32E", "P49H"], "p7": ["E21A", "R52G"], "pro": ["K20R", "P39Q"], "rev": ["D7N", "Q51E", "I55L", "S61T", "H82N", "C85S", "T93A", "E111G"], "tat": ["T19A", "Y35Q", "R53K"], "vif": ["V39S", "H48N", "V65I", "S116A", "I129V", "Q167K", "K176E", "R184K"], "vpr": ["Q3R", "I84T"], "vpu": ["L4F", "A10T", "V34L", "N80D"]}, "labels": {"aa": "INT: A91T, G163R, T206S, Q221R; RT-p51: I178L, I202V, A288T, A297T, Q334H; RT-p66: I178L, I202V, A288T, A297T, Q334H, R463K, A466T, K527Q; gp120: A32S, N102H, N105S, -106L, -107K, N108E, -123P, T134S, N157S, -162N, N169D, L260F, N274Y, T292A, D294K, Q316R, K318R, -328T, K329-, -367G, -368S, -369N, -370G, -371T, T385-, P389L, N432Q, N434S, -436Q, K472R; gp41: V2A, G3V, M4I, T25A, D113E, E129Y, E137Q, R231N, D232E, A243P, F263L, Q290L, S293G, E320A, A325I, V329I, R334T, L340F; nef: V30E, V33A, E63D, R71K, Y120F, R178G, D205G; p17: M31L, I35V, D47N, R58Q, K76R, V92I, S111N, Q116K; p2: V13I, M14L; p24: L15I, V86A, H87Q, M96I, S225G; p6: G18R, T22N, D32E, P49H; p7: E21A, R52G; pro: K20R, P39Q; rev: D7N, Q51E, I55L, S61T, H82N, C85S, T93A, E111G; tat: T19A, Y35Q, R53K; vif: V39S, H48N, V65I, S116A, I129V, Q167K, K176E, R184K; vpr: Q3R, I84T; vpu: L4F, A10T, V34L, N80D"}}}]}, {"name": "F1_NODE_0000040", "node_attrs": {"div": 0.09168, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["C641T", "C681A", "T771G", "T824C", "T1040C", "A1115G", "T1181C", "C1456-", "A1475C", "G1527A", "A1709G", "A1772G", "G1841A", "G1845A", "T1978G", "T2158C", "T2443C", "T2464G", "A2612G", "C2626A", "A2627T", "A3264G", "C3275T", "G3340A", "G4252A", "A4315G", "T4388G", "G4696A", "T4701G", "C4907T", "T4932G", "T5263C", "T5336G", "T5384C", "T5398C", "C5444A", "C5481A", "T5567A", "A5568C", "T5579C", "T5602G", "T5617A", "T5620A", "G5623A", "T5627-", "A5628-", "A5629-", "G5630-", "C5631-", "T5857G", "A6086G", "C6087A", "-6175C", "T6181C", "G6211-", "G6214-", "C6353A", "G6490A", "A6573G", "C6667T", "-6693C", "C6713A", "C7014T", "C7025A", "C7170T", "A7290G", "A7313C", "G7519A", "T7609C", "G7630C", "G7631C", "A7750G", "A7995G", "C8092A", "G8125A", "A8168G", "T8182C", "A8258C", "C8265T", "A8489T", "A8564G", "C8720T", "G8738A", "T8759G", "G8915A", "A9095G"], "INT": ["S205A"], "RT-p51": ["D123E", "T173A", "D177E", "I178L", "K390R"], "RT-p66": ["D123E", "T173A", "D177E", "I178L", "K390R"], "gp120": ["N1K", "T78E", "-112T", "-113N", "H167N", "E240G", "H280P", "T439I", "K479R"], "gp41": ["M4L", "F263L", "T289A", "I319L", "A321V"], "nef": ["R49S", "F139L"], "p17": ["Q116K"], "p24": ["S14A"], "p7": ["K3N", "E21T"], "pro": ["V15I", "G16E", "D60E"], "rev": ["Y18T", "H82N", "H107R", "S112P"], "tat": ["L3P", "Y35Q", "I64N", "L68P"], "vif": ["R37K", "S116T"], "vpu": ["I7-", "S8-"]}, "labels": {"aa": "INT: S205A; RT-p51: D123E, T173A, D177E, I178L, K390R; RT-p66: D123E, T173A, D177E, I178L, K390R; gp120: N1K, T78E, -112T, -113N, H167N, E240G, H280P, T439I, K479R; gp41: M4L, F263L, T289A, I319L, A321V; nef: R49S, F139L; p17: Q116K; p24: S14A; p7: K3N, E21T; pro: V15I, G16E, D60E; rev: Y18T, H82N, H107R, S112P; tat: L3P, Y35Q, I64N, L68P; vif: R37K, S116T; vpu: I7-, S8-"}}, "children": [{"name": "FJ771009", "node_attrs": {"div": 0.12847, "accession": "FJ771009", "clade_membership": {"value": "F1"}, "country": {"value": "BR"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06BR579"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A10G", "G11-", "T12-", "T13-", "A14-", "G15-", "A16-", "C17-", "C18-", "A19-", "G20-", "A21-", "T22-", "T23-", "T24-", "G25-", "A26-", "G27-", "C28-", "C29-", "T30-", "G31-", "G32-", "G33-", "A34-", "G35-", "C36-", "T37-", "C38-", "T39-", "C40-", "T41-", "G42-", "G43-", "C44-", "T45-", "A46-", "G47-", "C48-", "T49-", "A50-", "G51-", "G52-", "G53-", "A54-", "A55-", "C56-", "C57-", "C58-", "A59-", "C60-", "T61-", "G62-", "C63-", "T64-", "T65-", "A66-", "A67-", "G68-", "C69-", "C70-", "T71-", "C72-", "A73-", "A74-", "T75-", "A76-", "A77-", "A78-", "G79-", "C80-", "T81-", "T82-", "G83-", "C84-", "C85-", "T86-", "T87-", "G88-", "A89-", "G90-", "T91-", "G92-", "A152-", "T201C", "A286G", "-304T", "T341C", "A388G", "A399C", "G401T", "C435T", "A440T", "C471G", "T495G", "G520C", "C525A", "A530G", "C537A", "C558A", "C583T", "A605G", "G607A", "A661G", "T749C", "A755G", "T773C", "T774A", "A797T", "A881G", "T885C", "T978G", "A998G", "A1160G", "A1205G", "C1220T", "A1359T", "G1404A", "G1443-", "C1444-", "A1445-", "A1449C", "-1456A", "T1484C", "G1495A", "C1541A", "A1589G", "C1598T", "T1676C", "T1681C", "A1687G", "T1741C", "C1775-", "G1776-", "A1777-", "T1827C", "A1968G", "A1982G", "G2027A", "T2066C", "A2152C", "T2171C", "A2203C", "A2344G", "C2366A", "A2380G", "G2447A", "G2470A", "A2519G", "T2520C", "T2521C", "C2575T", "T2579A", "A2716T", "T2735C", "G2842A", "C2975T", "C2985T", "T3068C", "A3079G", "T3132A", "A3316G", "G3402A", "C3492T", "C3577T", "T3644A", "T3668C", "A3877G", "T3909A", "A4078C", "A4083G", "A4182G", "T4316C", "C4321T", "A4338G", "C4357T", "A4427T", "A4577C", "G4583C", "A4774C", "T4776G", "G4799A", "A4808C", "G4871T", "G4932A", "A4971G", "T5003C", "A5007C", "G5069A", "C5084T", "G5167A", "G5176A", "T5224G", "A5235T", "C5237T", "A5246G", "C5248A", "G5269A", "T5281C", "C5397G", "T5515C", "G5543A", "A5556G", "G5575C", "A5603T", "A5617G", "A5620G", "T5621C", "C5624T", "A5626G", "-5627G", "-5628C", "C5678T", "T5684C", "G5700A", "G5706A", "A5720G", "T5727C", "A5830G", "C5833T", "C5834T", "A5866T", "C5869A", "T5871G", "A5915T", "C5917T", "G5972A", "C5974T", "C5998T", "T6004C", "A6065G", "T6072C", "-6171C", "-6174T", "-6180G", "A6195G", "-6198C", "-6201A", "-6202A", "-6203A", "-6204A", "-6205C", "C6207A", "C6209A", "T6210A", "-6211C", "A6213C", "-6214C", "-6215C", "-6216T", "A6217G", "C6221A", "C6222A", "G6225A", "G6267T", "T6289G", "A6303G", "A6324G", "T6325C", "A6330G", "G6336A", "C6343T", "T6358C", "A6362G", "C6363T", "C6364G", "T6373A", "A6376G", "A6438T", "A6461G", "A6462T", "A6465G", "G6478A", "A6489C", "T6641G", "A6682G", "A6695T", "A6712G", "C6766T", "A6776G", "C6777A", "A6796G", "G6797A", "A6799C", "A6806-", "G6808A", "G6809A", "A6811C", "G6814A", "T6815G", "A6817T", "G6821T", "C6824T", "A6825C", "T6826A", "-6830C", "-6831C", "-6832C", "A6848G", "A6854G", "A6859T", "A6881G", "T6883C", "-6947A", "-6948A", "-6949C", "-6950A", "-6951C", "-6979A", "-6980G", "-6981G", "-6982A", "-6983A", "-6984C", "-6985C", "-6986A", "-6987G", "-6988T", "-6989A", "-6990C", "-6992A", "-6993A", "-6994T", "T7003-", "-7005C", "A7013G", "C7096T", "T7099A", "A7100G", "C7101T", "A7113C", "T7153C", "A7154C", "T7156G", "G7160A", "T7180G", "A7237G", "G7238C", "G7256A", "A7265T", "G7291A", "T7321C", "A7399G", "T7400C", "A7420G", "T7516G", "G7517A", "A7522G", "A7532C", "A7542G", "G7552A", "A7583C", "A7613T", "G7614A", "A7620G", "A7626T", "C7631T", "A7632T", "G7633T", "G7640A", "G7642A", "A7676G", "G7677A", "T7682C", "C7684T", "T7685A", "T7690A", "G7691T", "A7693C", "G7712A", "C7723T", "G7729A", "A7734T", "G7735A", "G7753A", "A7781G", "T7796A", "A7800G", "A7818G", "A7820C", "C7825T", "A7826G", "G7846A", "G7868A", "G7883A", "T7912C", "A7929C", "C7940T", "A7953G", "C7954A", "G7992A", "T8007G", "C8009A", "A8014T", "A8051C", "G8076A", "A8117C", "A8132T", "A8180G", "C8221A", "C8277T", "G8288A", "T8302C", "A8308G", "G8317A", "G8330T", "C8331T", "A8338C", "A8370T", "A8372C", "T8374G", "T8375G", "A8378G", "C8382T", "G8385A", "A8409G", "T8414A", "A8423G", "G8476A", "G8479A", "C8504T", "T8505G", "A8525G", "A8531G", "T8546C", "A8573G", "T8582C", "C8595A", "A8636T", "A8647G", "C8648G", "A8655C", "G8666T", "T8747C", "G8759A", "T8770A", "G8787C", "A8788C", "A8804G", "A8805C", "T8832C", "A8837G", "T8864G", "A8882C", "A8893C", "G8894A", "A8954G", "G8955A", "A8991G", "G9026T", "T9108C"], "INT": ["L45Q", "K103R", "Q136R", "F181L", "K188R", "I218L", "I268L", "D270H"], "RT-p51": ["E36D", "Q91K", "V118I", "V135I", "I142A", "C162S", "E207D", "F214L", "P294S", "A297V", "F346Y", "G436E"], "RT-p66": ["E36D", "Q91K", "V118I", "V135I", "I142A", "C162S", "E207D", "F214L", "P294S", "A297V", "F346Y", "G436E", "A466V", "L517I"], "gp120": ["-3D", "E4-", "N5K", "L6W", "T21S", "V40I", "N71D", "V73A", "-106A", "-107I", "-109S", "-110T", "-111N", "-114S", "-115T", "-116K", "-117N", "-118N", "-119N", "-120T", "-121L", "-123K", "G124E", "R138I", "H145Q", "K150R", "N157S", "N159S", "S160N", "-162S", "T170V", "Y195F", "K203V", "K204R", "K212T", "S263A", "I281L", "T308E", "E315N", "K318-", "N327-", "K332E", "N334D", "I343V", "D365N", "-367G", "-380T", "-381S", "-382T", "-383N", "-384A", "T387V", "T416V", "N420T", "N432K", "N433D", "-436K", "E462Q", "V468I", "T471S", "K472R"], "gp41": ["M54L", "V72I", "K77Q", "Q80R", "T94P", "S104Y", "K106S", "Q108L", "E110F", "D113K", "S125D", "Y127H", "S128T", "E130Y", "E137K", "K144I", "N160D", "S165T", "N166S", "K172R", "I173L", "I175V", "A189T", "V194I", "H209P", "P213S", "D217G", "G230D", "V235G", "L237F", "R258H", "N272H", "R277W", "S293G", "A325V", "V329I", "A343F"], "nef": ["I10F", "V11G", "P14S", "A15T", "T23A", "S45N", "S46N", "L55V", "L85I", "E98D", "Y102W", "K105Q", "E108D", "F143Y", "D149P", "K155Q", "D174E", "K184T", "D205N"], "p17": ["K18R", "L46V", "S54A", "G62A", "L64I", "L68I", "L75I", "A83V", "R91K", "N109S"], "p2": ["A7T", "T8H", "N9-", "T12N"], "p24": ["L15I", "L83V", "T210S"], "p6": ["L1P", "N3S", "I21T", "D32E", "E33G", "G34L", "L35Y", "Y36P", "*50Q"], "p7": ["R10K"], "pro": ["L10P", "K57R", "I62V", "V77I"], "rev": ["K14R", "K20N", "P31L", "Q36K", "A54E", "S56C", "E68A", "E90A", "E95V", "E111G"], "tat": ["N7K", "T23N", "Y47H", "D67H", "I74L", "T82E"], "vif": ["K63T", "L64V", "R95S", "K128R", "I129V", "K141Q"], "vpr": ["H40Q", "Q44L", "H45Y", "N48E"], "vpu": ["L4V", "L5A", "A6I", "-7G", "T24I", "V26A", "K38R", "I75V", "P76F", "N80D"]}, "labels": {"aa": "INT: L45Q, K103R, Q136R, F181L, K188R, I218L, I268L, D270H; RT-p51: E36D, Q91K, V118I, V135I, I142A, C162S, E207D, F214L, P294S, A297V, F346Y, G436E; RT-p66: E36D, Q91K, V118I, V135I, I142A, C162S, E207D, F214L, P294S, A297V, F346Y, G436E, A466V, L517I; gp120: -3D, E4-, N5K, L6W, T21S, V40I, N71D, V73A, -106A, -107I, -109S, -110T, -111N, -114S, -115T, -116K, -117N, -118N, -119N, -120T, -121L, -123K, G124E, R138I, H145Q, K150R, N157S, N159S, S160N, -162S, T170V, Y195F, K203V, K204R, K212T, S263A, I281L, T308E, E315N, K318-, N327-, K332E, N334D, I343V, D365N, -367G, -380T, -381S, -382T, -383N, -384A, T387V, T416V, N420T, N432K, N433D, -436K, E462Q, V468I, T471S, K472R; gp41: M54L, V72I, K77Q, Q80R, T94P, S104Y, K106S, Q108L, E110F, D113K, S125D, Y127H, S128T, E130Y, E137K, K144I, N160D, S165T, N166S, K172R, I173L, I175V, A189T, V194I, H209P, P213S, D217G, G230D, V235G, L237F, R258H, N272H, R277W, S293G, A325V, V329I, A343F; nef: I10F, V11G, P14S, A15T, T23A, S45N, S46N, L55V, L85I, E98D, Y102W, K105Q, E108D, F143Y, D149P, K155Q, D174E, K184T, D205N; p17: K18R, L46V, S54A, G62A, L64I, L68I, L75I, A83V, R91K, N109S; p2: A7T, T8H, N9-, T12N; p24: L15I, L83V, T210S; p6: L1P, N3S, I21T, D32E, E33G, G34L, L35Y, Y36P, *50Q; p7: R10K; pro: L10P, K57R, I62V, V77I; rev: K14R, K20N, P31L, Q36K, A54E, S56C, E68A, E90A, E95V, E111G; tat: N7K, T23N, Y47H, D67H, I74L, T82E; vif: K63T, L64V, R95S, K128R, I129V, K141Q; vpr: H40Q, Q44L, H45Y, N48E; vpu: L4V, L5A, A6I, -7G, T24I, V26A, K38R, I75V, P76F, N80D"}}}, {"name": "F1_NODE_0000041", "node_attrs": {"div": 0.11571999999999999, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G200T", "A278G", "-280G", "-304A", "-305A", "G401A", "A438G", "A464G", "A571T", "G614T", "A656G", "G677A", "T734C", "A810G", "T858C", "T875C", "C1013T", "T1253C", "G1452A", "A1455-", "T1457-", "-1458A", "-1459A", "-1460A", "A1464C", "T1511C", "C1523T", "G1588A", "A1733G", "C1756T", "G1760A", "T1783C", "C1826G", "C1913A", "C2003T", "T2013C", "T2083C", "A2119G", "A2140T", "A2182G", "C2199T", "A2215T", "A2241G", "C2326T", "T2383C", "A2498C", "C2500T", "C2503T", "A2563C", "C2596T", "G2683A", "G2704A", "A2716G", "A2752G", "A2755G", "T2935C", "G2956A", "C2968T", "C2975A", "G3058A", "A3130C", "G3217A", "A3247G", "C3252T", "A3265G", "C3266T", "A3304C", "C3352T", "A3370G", "C3412T", "A3463G", "G3494A", "T3497C", "A3535C", "T3545A", "A3583G", "G3755A", "C3756A", "A3766G", "G3787A", "T3991C", "C4042T", "A4130C", "T4135C", "C4147T", "G4150A", "A4178G", "T4198C", "G4268A", "C4643A", "A4661C", "C4674T", "A4694C", "A4709G", "G4735A", "C4827T", "G4969A", "A4986G", "A5042C", "C5085A", "C5102T", "G5140A", "A5187G", "G5290A", "T5292C", "A5293G", "T5294C", "C5306T", "C5314T", "T5356C", "A5431G", "A5444G", "A5463C", "A5491G", "C5492T", "A5493G", "A5548C", "G5575A", "C5612T", "C5624G", "A5625C", "A5626-", "C5636T", "C5663T", "G5784A", "A5787T", "T5788G", "T5789C", "G5790A", "C5792A", "A5793G", "C5795A", "C5797T", "T5799G", "G5801C", "G5802A", "A5804C", "A5805C", "A5806C", "-5815G", "-5816A", "-5817A", "-5818G", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5845A", "C5851T", "C5869T", "A5957G", "G6028A", "G6050A", "T6052C", "G6121A", "C6165T", "T6166G", "G6170T", "-6174A", "-6180C", "T6184C", "T6193C", "C6196T", "-6198A", "T6199C", "C6221T", "C6287T", "C6347T", "G6466C", "A6520G", "C6567T", "T6577G", "A6581G", "A6589T", "C6632T", "G6725A", "A6734G", "T6735A", "G6767A", "G6773A", "G6774A", "A6790C", "A6798G", "G6810A", "T6822A", "C6823T", "-6833C", "-6834C", "T6916C", "C6925T", "G6935A", "G6936A", "-7005A", "T7015A", "G7040A", "A7046C", "A7063G", "C7102A", "C7108T", "T7123G", "A7148C", "G7162T", "G7269A", "T7322C", "G7426A", "C7433T", "C7463A", "C7597T", "T7604G", "G7688A", "G7712C", "T7913C", "A7918T", "A7921T", "A8019G", "A8095C", "G8134A", "G8323C", "G8429A", "G8476C", "T8492C", "T8558C", "T8600C", "G8678A", "A8701T", "T8711C", "G8834A", "G8885A", "C8904A", "A8935G", "T8947A", "G9008-", "-9009A", "C9023A", "A9027G", "C9041T", "A9042G"], "INT": ["T119P", "I135V", "V165I"], "RT-p51": ["T35I", "E40D", "K49R", "V135L", "P294T", "T386I"], "RT-p66": ["T35I", "E40D", "K49R", "V135L", "P294T", "T386I", "V467I", "Q480H", "L484I", "A554N"], "gp120": ["K35E", "D66N", "-123S", "H145Y", "K204N", "A238V", "D241E", "I243V", "R245S", "L260F", "A291T", "D294E", "V305I", "G307K", "K312N", "-319E", "S323D", "G361K", "D365E", "-371T", "-384D", "V396I", "M398L"], "gp41": ["S101A", "E110Q", "E129N", "E137Q", "L206F", "N239S", "L340F"], "nef": ["S45T", "Y120F", "K198R", "F202Y"], "p17": ["I35V", "Y79F", "E93D", "K114T"], "p2": ["-10T", "A11K", "T12-", "V13I", "M14L"], "p24": ["I27V", "S225G"], "p6": ["P23-", "S24P", "P25S", "-26L", "L35P"], "p7": ["R41K"], "pro": ["L10V", "P39T", "H69Y", "I72T"], "rev": ["E11D", "I83L", "G96R"], "tat": ["T19A", "T23S", "K24N", "T39V", "T58P", "D67N"], "vif": ["N19K", "H30Y", "K36N", "R50K", "E60K", "K63R", "T116A", "Q167R", "G185E"], "vpr": ["N28S", "I63T", "I84T"], "vpu": ["S2L", "L4I", "L5I", "A6S", "A10V", "A19V", "M71V"]}, "labels": {"aa": "INT: T119P, I135V, V165I; RT-p51: T35I, E40D, K49R, V135L, P294T, T386I; RT-p66: T35I, E40D, K49R, V135L, P294T, T386I, V467I, Q480H, L484I, A554N; gp120: K35E, D66N, -123S, H145Y, K204N, A238V, D241E, I243V, R245S, L260F, A291T, D294E, V305I, G307K, K312N, -319E, S323D, G361K, D365E, -371T, -384D, V396I, M398L; gp41: S101A, E110Q, E129N, E137Q, L206F, N239S, L340F; nef: S45T, Y120F, K198R, F202Y; p17: I35V, Y79F, E93D, K114T; p2: -10T, A11K, T12-, V13I, M14L; p24: I27V, S225G; p6: P23-, S24P, P25S, -26L, L35P; p7: R41K; pro: L10V, P39T, H69Y, I72T; rev: E11D, I83L, G96R; tat: T19A, T23S, K24N, T39V, T58P, D67N; vif: N19K, H30Y, K36N, R50K, E60K, K63R, T116A, Q167R, G185E; vpr: N28S, I63T, I84T; vpu: S2L, L4I, L5I, A6S, A10V, A19V, M71V"}}, "children": [{"name": "MT417747", "node_attrs": {"div": 0.13992, "accession": "MT417747", "clade_membership": {"value": "F1"}, "country": {"value": "BE"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DK"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G404A", "A419G", "T434C", "C525A", "A533G", "T534A", "C535G", "C583T", "A676C", "A697C", "-704G", "-714G", "-715T", "A833C", "A863G", "C950T", "A959G", "A1418G", "A1450C", "T1451C", "A1492C", "A1500G", "T1501C", "C1541A", "A1607G", "A1622G", "A1687G", "A1701T", "C1724T", "G1766A", "G1778A", "G1826A", "A1828G", "T1873C", "A1894G", "T2017C", "A2075C", "T2129C", "A2206T", "C2388G", "A2399C", "G2539A", "A2726G", "A2727C", "A2950G", "C2952T", "A3080T", "C3130T", "G3264A", "T3292G", "C3304T", "C3322T", "C3498T", "C3500T", "G3508A", "G3544A", "A3553G", "T3559C", "T3613C", "C3649T", "A3675G", "A3760G", "A3808C", "A3900G", "T3904C", "G3989A", "C4210T", "A4264C", "A4273G", "C4444T", "C4667T", "T4670C", "A4687G", "T4703C", "G4764A", "A4774G", "C4800T", "C4902T", "T4919C", "A4937C", "C4992T", "A4993C", "A5007C", "T5171C", "G5187C", "A5230G", "C5248T", "G5257A", "T5260C", "T5281G", "A5345G", "C5398T", "T5403A", "C5445T", "C5513T", "T5515C", "G5538A", "C5544A", "C5548T", "C5569T", "G5706A", "A5784T", "A5802C", "G5857A", "A5867G", "C5884A", "A5956T", "G6029C", "A6044T", "T6046C", "C6115T", "A6159G", "T6165A", "-6171A", "A6174C", "T6178C", "C6180A", "C6181T", "A6182G", "A6186C", "T6187C", "A6197G", "C6199A", "A6200-", "A6206-", "C6207-", "C6208-", "C6209-", "T6210-", "A6212-", "A6213-", "A6217-", "T6221G", "C6222T", "G6227A", "G6263T", "T6307A", "G6314A", "A6330G", "T6337C", "C6340T", "T6341G", "C6343T", "A6376G", "C6477T", "A6535G", "T6541G", "A6544G", "T6592C", "A6706G", "T6721C", "A6753T", "A6776T", "C6800A", "G6808A", "T6823G", "C6824A", "T6826G", "T6829A", "-6830A", "-6831A", "-6832G", "C6833A", "C6834A", "A6836C", "A6840C", "C6843A", "A6848G", "C6856A", "T6860G", "-6947G", "-6948A", "-6949A", "-6950A", "-6951C", "-6952A", "-6954G", "-6955A", "-6956A", "-6957A", "-6958C", "-6959A", "-6960A", "-6961A", "-6962A", "-6963C", "-6964T", "-6965C", "-6966A", "-6967A", "-6968T", "-6969G", "-6970G", "-6971C", "-6972A", "-6973C", "-6974A", "-6975C", "-6976T", "-6977G", "-6978A", "-6979A", "C6991-", "T7014C", "A7037G", "A7093G", "C7096A", "A7107G", "T7108A", "C7127T", "A7161C", "A7246T", "T7308C", "A7366G", "A7420C", "G7453A", "G7508A", "A7519G", "G7628A", "G7633A", "C7645T", "C7658G", "A7782C", "A7963C", "G7992A", "C8048T", "G8105A", "T8112G", "G8121A", "C8145T", "C8169T", "A8172T", "A8255C", "T8257C", "A8308G", "G8329A", "T8366A", "C8386A", "T8387G", "A8405G", "C8413G", "C8415A", "A8447G", "A8469G", "G8479A", "T8486C", "A8522G", "A8597T", "C8699T", "T8757C", "A8852G", "T8867C", "G8868C", "A8874G", "A8887G", "G8933A", "C8937T", "A8956C", "C8960G", "G8970A", "A8971G", "T8972A", "T8973A", "G8974T", "C8978A", "A8980G"], "INT": ["E11D", "K42R", "V72I"], "RT-p51": ["A98G", "K102Q", "K211A", "A286V", "I329L", "R390K", "D399E"], "RT-p66": ["A98G", "K102Q", "K211A", "A286V", "I329L", "R390K", "D399E", "S468L", "K527R"], "gp120": ["N5D", "E34D", "E59Q", "N64Y", "N102S", "T104K", "-106Y", "-107T", "-109N", "-110A", "-111T", "-114N", "-115E", "S123V", "A125T", "V137L", "V154I", "N157D", "N158-", "N159-", "S160-", "N161-", "T208M", "K300M", "T308S", "E315G", "Q316K", "D323E", "H324K", "-328V", "K329T", "T330K", "K332E", "N334K", "S336A", "I395V", "N414K", "N418R", "N432H", "-436A", "E464D"], "gp41": ["V2A", "Q39H", "V69I", "D109N", "D113E", "Q119E", "N160T", "E220D", "G230D", "A268T", "I270S", "R273K", "A281V", "A289V", "Q290L", "I318L"], "nef": ["S8R", "A15E", "P24R", "P25T", "I43V", "S46N", "E176Q", "R178G", "K182R", "R188S", "H199Y", "D205A", "C206W"], "p17": ["L64I", "A83V", "D121A", "-124V"], "p2": ["N9T", "-12V", "I13L"], "p6": ["N3S", "T8S", "*50W"], "p7": ["Q9P", "I12A"], "pro": ["V10M", "I93L"], "rev": ["S8N", "T10E", "P67L", "S86N", "D88E"], "tat": ["D9E", "S46F", "Y47H", "H56R", "P58S", "H65Y", "K85T"], "vif": ["K34R", "E117D", "N134D", "Q136S", "K141Q", "R167K"], "vpr": ["S28T"]}, "labels": {"aa": "INT: E11D, K42R, V72I; RT-p51: A98G, K102Q, K211A, A286V, I329L, R390K, D399E; RT-p66: A98G, K102Q, K211A, A286V, I329L, R390K, D399E, S468L, K527R; gp120: N5D, E34D, E59Q, N64Y, N102S, T104K, -106Y, -107T, -109N, -110A, -111T, -114N, -115E, S123V, A125T, V137L, V154I, N157D, N158-, N159-, S160-, N161-, T208M, K300M, T308S, E315G, Q316K, D323E, H324K, -328V, K329T, T330K, K332E, N334K, S336A, I395V, N414K, N418R, N432H, -436A, E464D; gp41: V2A, Q39H, V69I, D109N, D113E, Q119E, N160T, E220D, G230D, A268T, I270S, R273K, A281V, A289V, Q290L, I318L; nef: S8R, A15E, P24R, P25T, I43V, S46N, E176Q, R178G, K182R, R188S, H199Y, D205A, C206W; p17: L64I, A83V, D121A, -124V; p2: N9T, -12V, I13L; p6: N3S, T8S, *50W; p7: Q9P, I12A; pro: V10M, I93L; rev: S8N, T10E, P67L, S86N, D88E; tat: D9E, S46F, Y47H, H56R, P58S, H65Y, K85T; vif: K34R, E117D, N134D, Q136S, K141Q, R167K; vpr: S28T"}}}, {"name": "F1_NODE_0000042", "node_attrs": {"div": 0.11973999999999999, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A1337G", "G1461A", "A1835G", "G3901A", "C4025A", "C4965T", "A5086G", "T5313C", "A5396G", "A5448T", "G5647T", "G6023T", "T6160C", "C6172-", "A6173-", "A6179G", "-6211A", "-6214A", "-6215G", "-6216A", "A6288C", "G6638C", "-6697G", "A6703-", "A6788G", "A6820G", "-6988T", "-6989A", "-6990A", "-6992A", "-6993C", "-6994A", "-6995C", "-6996A", "-6997G", "-7001A", "-7002A", "A7152G", "A7190G", "A7197G", "G8159T", "T8218C", "A8446G", "A8456T", "C8676T", "G8762A"], "INT": ["L84I"], "gp120": ["V57F", "T104V", "E262Q", "I281M", "T387I", "N433S", "N446D", "K448R"], "gp41": ["Q108L", "G286W"], "nef": ["Q35R", "E38D", "I133T"], "pro": ["I13V"], "rev": ["G104V"], "tat": ["N7S"], "vpr": ["I70T"], "vpu": ["V14L"]}, "labels": {"aa": "INT: L84I; gp120: V57F, T104V, E262Q, I281M, T387I, N433S, N446D, K448R; gp41: Q108L, G286W; nef: Q35R, E38D, I133T; pro: I13V; rev: G104V; tat: N7S; vpr: I70T; vpu: V14L"}}, "children": [{"name": "JX140671", "node_attrs": {"div": 0.13790999999999998, "accession": "JX140671", "clade_membership": {"value": "F1"}, "country": {"value": "ES"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMF110ES001"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G206A", "A286G", "G310A", "G317A", "C435T", "G455A", "G582A", "G651A", "A676C", "C719T", "G752A", "T774A", "G818A", "A866G", "G1031A", "A1088T", "C1133T", "G1184A", "A1259G", "A1271G", "G1503A", "C1610A", "T1682C", "G1709A", "G1727A", "G1772A", "C1775A", "T1873C", "A2198G", "A2329G", "A2341G", "G2392T", "G2411A", "A2625G", "A2693G", "G2716C", "G2725A", "T2854G", "A3080G", "A3103G", "A3111T", "G3391A", "A3454G", "C3497T", "T3613C", "A3756G", "C3773T", "A3808T", "A3982G", "A4060G", "C4072T", "C4140T", "C4198T", "C4436A", "G4737A", "G4767A", "G4829A", "G4888A", "A4913C", "T4928C", "C4988A", "T5018G", "G5491A", "C5530T", "C5579T", "G5599T", "G5602A", "A5613G", "A5643G", "A5664G", "G5747T", "G5755T", "A5790G", "G5882A", "A5908G", "A6015G", "T6023C", "A6030T", "G6130A", "A6158T", "A6164G", "A6188G", "A6192C", "A6195G", "A6197G", "A6198G", "-6201A", "-6202T", "-6203A", "-6204G", "-6205C", "G6253A", "G6277T", "C6288T", "C6317T", "C6322-", "A6323-", "A6324-", "A6333G", "T6334A", "A6338G", "G6339A", "C6340A", "A6438T", "A6443C", "A6471C", "C6477T", "C6482A", "C6483T", "G6547A", "T6567C", "T6589G", "A6659T", "T6694C", "A6706G", "G6714A", "T6721C", "T6760C", "A6774G", "C6790A", "G6793A", "A6796G", "G6798A", "C6800A", "A6801G", "A6819G", "A6881G", "-6947G", "-6948A", "-6949A", "-6950A", "-6951C", "-6979A", "-6980G", "-6981A", "-6982A", "-6983T", "-6984C", "-6985C", "-6986G", "-6987G", "G7055C", "A7094C", "A7113G", "T7130C", "G7132A", "C7134T", "C7148A", "A7155G", "A7163G", "T7222C", "C7342T", "G7343A", "C7582T", "A7590G", "G7604A", "C7609T", "A7626T", "G7642C", "A7711C", "G7769A", "G7790A", "C8009A", "A8029T", "G8036T", "C8145T", "T8206A", "C8213T", "A8228G", "A8273G", "C8323T", "G8458A", "T8585C", "C8595G", "C8601A", "C8607T", "A8608T", "A8656G", "G8666C", "T8740C", "C8741T", "A8746T", "G8759T", "A8852G", "A8869C", "A8886C", "G8888A", 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"E106K"], "p24": ["L15I"], "p6": ["D32E"], "p7": ["V13I", "D48E"], "rev": ["T10A", "A54E", "S61C", "C63F"], "tat": ["V39M", "R52W", "H56R", "P68L"], "vpu": ["R47I", "A50S"]}, "labels": {"aa": "INT: E11D, T122I, Q221K; RT-p51: I35V, V106I, E177G, T200A, E207D, I329V, Y339F; RT-p66: I35V, V106I, E177G, T200A, E207D, I329V, Y339F, N554S; gp120: V10I, Q54R, F57L, E59V, N102Y, N105-, -109Y, -110N, -111A, -114A, -115T, -116S, -117G, -118F, -119N, -120N, -121S, M133I, Q141H, Y145F, P155S, N159R, N161E, Y195F, I197L, N206T, T208M, P210I, V238A, S245R, T269S, R287K, K307R, N312E, Q316R, K322R, I343V, -367E, -368S, -369G, -370N, -372Q, -373N, E401Q, N414H, N420S, T427I, N434S, -436D, T437A; gp41: A14T, N96S, A101T, E136D, A156T, D163N, L242F, V245F, A281V, L304F, I309V, R324G; nef: R39K, L85V, L87I, H89F, K105R, E108D, Y135F, L139F, E176A, K182Q, R188S, L191R, R198K, H199Y, E201Q; p17: A83T, E106K; p24: L15I; p6: D32E; p7: V13I, D48E; rev: T10A, A54E, S61C, C63F; tat: V39M, R52W, H56R, P68L; vpu: R47I, A50S"}}}, {"name": "F1_NODE_0000043", "node_attrs": {"div": 0.12451999999999999, "clade_membership": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["A426C", "A595T", "T1052A", "C1060A", "G1115A", "G1498A", "T2269G", "C2797A", "A2925G", "C3492T", "G4582A", "T4679C", "A4790G", "T5027C", "A5046G", "G5069A", "C5160T", "A5564C", "A5567T", "C5568A", "T6046G", "C6175T", "-6201G", "-6202C", "C6278A", "C6322T", "A6489C", "G6572A", "G6573A", "C6693A", "G6797A", "A6799C", "T6829C", "-6965A", "-6967T", "-6986A", "-6987A", "T7150A", "G7160A", "G7701A", "C8460A", "G8822A", "A8892C"], "RT-p51": ["K277R"], "RT-p66": ["K277R", "A466V", "S468P"], "gp120": ["N64K", "Q142K", "Y145S", "K212T", "G240K", "P280H", "E365-", "T366-", "N432Q"], "gp41": ["R133K"], "nef": ["K184Q"], "p17": ["M31L", "Y87F"], "p24": ["T110N"], "p7": ["R11K"], "rev": ["T18Y"], "tat": ["Q63P", "N64I"], "vif": ["H127Y", "I154V", "H192Y"], "vpr": ["T19I"]}, "labels": {"aa": "RT-p51: K277R; RT-p66: K277R, A466V, S468P; gp120: N64K, Q142K, Y145S, K212T, G240K, P280H, E365-, T366-, N432Q; gp41: R133K; nef: K184Q; p17: M31L, Y87F; p24: T110N; p7: R11K; rev: T18Y; tat: Q63P, N64I; vif: H127Y, I154V, H192Y; vpr: T19I"}}, "children": [{"name": "MT417748", "node_attrs": {"div": 0.14987999999999999, "accession": "MT417748", "clade_membership": {"value": "F1"}, "country": {"value": "BE"}, "date": {"value": 2017.0}, "Strain_name": {"value": "DL"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "C379A", "T396C", "A417C", "G428A", "G455A", "G474A", "A510C", "G519A", "A533G", "A554G", "A619G", "A878G", "A1073G", "A1089G", "C1118T", "C1133T", "A1250G", "T1296C", "A1327G", "C1350T", "T1385C", "G1419A", "T1422C", "C1444T", "A1459G", "C1464A", "A1602T", "A1643G", "C1670A", "A1759G", "A1828G", "G1858A", "A1894G", "A1918G", "C1987T", "G2038C", "T2041C", "C2083T", "G2131A", "G2182A", "A2197G", "G2201A", "G2269A", "T2365C", "T2503C", "G2612A", "A2616G", "G2630A", "A2693G", 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"p6": ["K27R", "*50W"], "p7": ["M46L"], "rev": ["T10P", "D11E", "K14R", "S99R", "S103L", "S106P"], "tat": ["H56P", "P58T", "E86K"], "vif": ["V39F", "K50R", "K60E", "R63E", "I129V", "N134E", "H183R"], "vpr": ["I19V", "I61V"], "vpu": ["I13V", "I46L", "E58D", "V71M"]}, "labels": {"aa": "INT: V31I, V32I, K42R, T122I, I203M, I218T, V234I; RT-p51: E36K, A173T, K174R, V179I, T200A, E207D, I274V, A288S, I329V; RT-p66: E36K, A173T, K174R, V179I, T200A, E207D, I274V, A288S, I329V, I467T, I484L, V531I; gp120: E34D, E59V, V104M, -106Y, -107N, N108A, -109T, -110N, -111T, -114N, -115S, -116T, -117L, -118V, -119E, N157S, N158E, S160N, -162S, V243I, D251N, R287K, N312D, E315I, D323G, H324Y, P326T, -328A, K329T, K361Q, R391K, G431S, N434Q, -436N, I439T, K472R, R480S, E481K, K482R, R483A; gp41: S13G, L84I, S107T, L108Y, D109N, I124V, N129K, K133N, N140I, A156T, S157N, M176I, A189T, G221E, R231K, V245A, A281G, I301V, L304F, V310A, L319I, I332V, L345Q; nef: S9R, P14S, M20L, R22Q, P25S, E63D, L85F, T133V, L139W, D149E, M168L, S169H, E201D, Q204K, C206W; p17: A15K, K28Q, D47N, K59Q, G62R, K95R, Q112-, Q113-, T114-, T115-, K116Q; p2: A7V, K11R, L14M; p24: S120G, K199R, P207S, V230I; p6: K27R, *50W; p7: M46L; rev: T10P, D11E, K14R, S99R, S103L, S106P; tat: H56P, P58T, E86K; vif: V39F, K50R, K60E, R63E, I129V, N134E, H183R; vpr: I19V, I61V; vpu: I13V, I46L, E58D, V71M"}}}, {"name": "KJ883138", "node_attrs": {"div": 0.14064, "accession": "KJ883138", "clade_membership": {"value": "F1"}, "country": {"value": "ES"}, "date": {"value": 2011.0}, "Strain_name": {"value": "VA0053_nfl"}, "LANL_subtype": {"value": "F1"}}, "branch_attrs": {"mutations": {"nuc": ["T156-", "G240A", "C435T", "T575C", "G650A", "C974T", "A1307G", "G1354C", "A1359T", "G1394A", "C1535T", "C1610A", "G1697A", "T2011C", "T2104C", "G2119A", "A2164G", "C2281T", "T2497C", "A2625G", "T2632A", "A2773C", "C2795T", "C3057A", "C3067A", "A3111T", "T3436C", "T3560G", "A3568G", "G3631A", "A3646G", "G3685A", "G3805A", "G3989A", "A4081G", 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["S61I", "L83I", "D88G", "A108T", "P112S"], "tat": ["I64L", "N67D", "P70S"], "vif": ["K22N", "M29K", "K33Q", "A62D", "T74A", "S118T", "R181K"], "vpr": ["I61T", "R62K"], "vpu": ["A66D"]}, "labels": {"aa": "INT: V72I; RT-p51: E177G, P321Q, D324E, Y339F; RT-p66: E177G, P321Q, D324E, Y339F, S489A; gp120: D29E, D50N, -106L, -107K, N108E, T112-, N113-, K143Q, N161T, -162F, I173M, E241D, T255I, S278G, A288T, T291A, N312H, E315S, E319K, K322R, K332T, I343V, I395V, N418H, S433R, -436T; gp41: I24M, D109E, Q110K, D113E, Q119E, K122T, N160S, K172R, I173L, R233K, A243S, I270A, A289V, I318L, R324G, F340L, A343L; nef: A15T, I16V, A83G, F120Y, R178G, R192K; p17: T114K; p24: G208A, T210S; p7: D48E; rev: S61I, L83I, D88G, A108T, P112S; tat: I64L, N67D, P70S; vif: K22N, M29K, K33Q, A62D, T74A, S118T, R181K; vpr: I61T, R62K; vpu: A66D"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000163", "node_attrs": {"div": 0.05753, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": 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"RT-p51": ["K20R", "T35V", "T39A", "K43E", "K103N", "K122E", "D123E", "A173K", "K174Q", "D177E", "M184V", "G190A", "E207Q", "L210W", "K211R", "T215Y", "Q245K", "D248E", "A286T", "D291E", "I292V", "G335S", "K356R", "A376S", "T377L", "A435I"], "RT-p66": ["K20R", "T35V", "T39A", "K43E", "K103N", "K122E", "D123E", "T173K", "K174Q", "D177E", "M184V", "G190A", "E207Q", "L210W", "K211R", "T215Y", "Q245K", "D248E", "A286T", "D291E", "I292V", "G335S", "K356R", "A376S", "L394Q", "A435I", "E471D", "N519S", "Q524E", "S534A"], "gp120": ["K35R", "N52S", "-106L", "-107K", "N108E", "E122-", "N159S", "D241T", "I281L", "A291T", "D294E", "-326P", "K329-", "I343V", "-370G", "-371T", "T385-"], "gp41": ["R46K", "D109E", "D113G", "S165T", "G215E", "E225G", "R231K", "G275L", "Y284L", "W286G", "R324T", "A325I", "A328G"], "nef": ["A49R", "T51N", "V85L", "Y102W", "E108D", "K155R"], "p17": ["S125N"], "p2": ["T10Q", "A11T", "-12N"], "p24": ["D71E", "P92A", "Q116G", "F169Y", "T178S"], "p6": ["G16R", "I21T", "P23T", "S24P", "P25S", "-26Q", "E33K", "G34E", "A39T", "K42R", "*50S"], "p7": ["K3R", "S4G", "G8N", "R41K"], "pro": ["D60E", "L63P"], "rev": ["E32T", "A54E", "T62S", "P67L", "T91Q", "S92G", "G93A", "T94E", "Q95E", "I102T", "V104G"], "tat": ["K71E", "R78H", "D80N"], "vif": ["G37E", "K63R", "I66V", "G101D", "H127R", "S130R"], "vpr": ["N28S", "I84T"], "vpu": ["A8S", "V10T", "-71V"]}, "labels": {"aa": "INT: I201V, V234L; RT-p51: K20R, T35V, T39A, K43E, K103N, K122E, D123E, A173K, K174Q, D177E, M184V, G190A, E207Q, L210W, K211R, T215Y, Q245K, D248E, A286T, D291E, I292V, G335S, K356R, A376S, T377L, A435I; RT-p66: K20R, T35V, T39A, K43E, K103N, K122E, D123E, T173K, K174Q, D177E, M184V, G190A, E207Q, L210W, K211R, T215Y, Q245K, D248E, A286T, D291E, I292V, G335S, K356R, A376S, L394Q, A435I, E471D, N519S, Q524E, S534A; gp120: K35R, N52S, -106L, -107K, N108E, E122-, N159S, D241T, I281L, A291T, D294E, -326P, K329-, I343V, -370G, -371T, T385-; gp41: R46K, D109E, D113G, S165T, G215E, E225G, R231K, G275L, Y284L, W286G, R324T, A325I, A328G; nef: A49R, T51N, V85L, Y102W, E108D, K155R; p17: S125N; p2: T10Q, A11T, -12N; p24: D71E, P92A, Q116G, F169Y, T178S; p6: G16R, I21T, P23T, S24P, P25S, -26Q, E33K, G34E, A39T, K42R, *50S; p7: K3R, S4G, G8N, R41K; pro: D60E, L63P; rev: E32T, A54E, T62S, P67L, T91Q, S92G, G93A, T94E, Q95E, I102T, V104G; tat: K71E, R78H, D80N; vif: G37E, K63R, I66V, G101D, H127R, S130R; vpr: N28S, I84T; vpu: A8S, V10T, -71V", "clade": "CRF39_BF1"}}, "children": [{"name": "EU735535", "node_attrs": {"div": 0.13901, "accession": "EU735535", "clade_membership": {"value": "CRF39_BF1"}, "country": {"value": "BR"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04BRRJ179"}, "LANL_subtype": {"value": "CRF39_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A133T", "A303-", "A304-", "G365C", "A368C", "T426C", "T473C", "G520C", "A551G", "A557G", "G579A", "G595A", "A609G", "A645C", "A689G", "C722T", "T749A", "G771T", "G821A", "C902T", "C944G", "A1074G", "G1078C", "A1133T", 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"A6849G", "A6850C", "C6856A", "T6857C", "T6860G", "G6935A", "G6936A", "A6937T", "-6989G", "-6990A", "-6991C", "-6992A", "-6993C", "-6994G", "-6995A", "-6996T", "-6997A", "-6998G", "-6999G", "-7000C", "-7001A", "-7002A", "-7005G", "T7012A", "C7014T", "G7026A", "A7032G", "A7060G", "C7078T", "A7100G", "A7113C", "A7149G", "A7151G", "A7152G", "T7153A", "A7155G", "A7161G", "G7162T", "-7164C", "T7222C", "G7256A", "A7274C", "G7307-", "T7308-", "G7309-", "G7311C", "A7313C", "C7320T", "A7322G", "G7341C", "T7403C", "C7429T", "G7440A", "A7450T", "G7508C", "A7527T", "G7534A", "A7688G", "G7691C", "G7712C", "A7714G", "G7717A", "G7790A", "T7796A", "T7877G", "T7912C", "A7921T", "G7944C", "A8019G", "A8023T", "T8032G", "T8048G", "A8099G", "G8117A", "C8168T", "G8255A", "G8330T", "G8335A", "T8371A", "G8373A", "T8375A", "A8396C", "C8406A", "T8414G", "G8418A", "G8427A", "T8440C", "A8446G", "A8459C", "G8462A", "A8469C", "G8488A", "C8491A", "T8505G", "A8537G", "G8588A", "C8648G", "T8666C", "C8676T", "A8739G", "T8745G", "G8787A", "A8788G", "A8823G", "C8835T", "C8869A", "A8886G", "C8904A", "G8905A", "C8906G", "T8915C", "C8967T", "C9017A", "G9049A", "T9084G", "G9095T"], "INT": ["V31I", "Q177L", "I182V"], "RT-p51": ["V35L", "M41L", "E44A", "V75M", "F77L", "V118I", "D121H", "Y146C", "C162S", "G196K", "L228H", "K245M", "M357T", "T369V", "A371V", "I375V", "R390K", "Q428E"], "RT-p66": ["V35L", "M41L", "E44A", "V75M", "F77L", "V118I", "D121H", "Y146C", "C162S", "G196K", "L228H", "K245M", "M357T", "T369V", "A371V", "I375V", "R390K", "Q428E", "T470E", "H483Y", "Q509K", "V531I", "A534T"], "gp120": ["N1S", "E4D", "Q54H", "V56E", "V57F", "T78D", "N105D", "-109D", "-110P", "N132F", "Q141K", "N157S", "N160S", "N169S", "T172A", "D183E", "K204R", "K212R", "T241K", "R287H", "Y290H", "E294K", "C303Y", "V305I", "E315R", "-319E", "K320E", "-328G", "K332S", "N334K", "S335P", "S336A", "G361N", "-367I", "-368G", "T387I", "R391K", "K393R", "T416A", "N420T", "N433G", "N434T", "-436Q", "T437N", "V468I", "K474Q"], "gp41": ["V2A", "G3L", "M4-", "A6V", "M7V", "G13A", "E49D", "V69L", "Y75F", "I84L", "E130Q", "E137Q", "K154Q", "D163N", "S192A", "R214P", "N239S", "L249V", "H258R", "I266V", "E272N", "Q290L", "V318I", "I319L", "A343S"], "nef": ["I10K", "V11I", "E18D", "A26T", "G29R", "V33A", "Q35R", "R39S", "I43L", "R49K", "A50D", "L55V", "I101V", "I133V", "Y135V", "D149S", "N161D", "K182V", "R188K"], "p17": ["G62A", "V82I", "C87Y", "I92V", "I104L"], "p2": ["T8-"], "p24": ["A14S", "I115V", "G116A", "N183A"], "p6": ["P5T", "F15L", "R16M", "T23A", "Q30P", "K31R"], "p7": ["M1V", "N8P", "Q9R", "R11T", "I12-", "K47L"], "pro": ["L10I", "K20R", "K43T", "F53I", "I54V", "K57R", "V82A"], "rev": ["A15T", "I59F", "S62A", "L67R", "N84S", "G90E", "P107L"], "tat": ["E2D", "I39T", "S61N", "L74I", "G79R"], "vif": ["S95R", "S116A", "N122H", "T155A", "V166L", "K181T"], "vpr": ["Q8H", "S28T", "P37V", "I61T", "I63T", "A93S"], "vpu": ["S8G", "V26A", "I28L", "L33F", "K38R", "P76L"]}, "labels": {"aa": "INT: V31I, Q177L, I182V; RT-p51: V35L, M41L, E44A, V75M, F77L, V118I, D121H, Y146C, C162S, G196K, L228H, K245M, M357T, T369V, A371V, I375V, R390K, Q428E; RT-p66: V35L, M41L, E44A, V75M, F77L, V118I, D121H, Y146C, C162S, G196K, L228H, K245M, M357T, T369V, A371V, I375V, R390K, Q428E, T470E, H483Y, Q509K, V531I, A534T; gp120: N1S, E4D, Q54H, V56E, V57F, T78D, N105D, -109D, -110P, N132F, Q141K, N157S, N160S, N169S, T172A, D183E, K204R, K212R, T241K, R287H, Y290H, E294K, C303Y, V305I, E315R, -319E, K320E, -328G, K332S, N334K, S335P, S336A, G361N, -367I, -368G, T387I, R391K, K393R, T416A, N420T, N433G, N434T, -436Q, T437N, V468I, K474Q; gp41: V2A, G3L, M4-, A6V, M7V, G13A, E49D, V69L, Y75F, I84L, E130Q, E137Q, K154Q, D163N, S192A, R214P, N239S, L249V, H258R, I266V, E272N, Q290L, V318I, I319L, A343S; nef: I10K, V11I, E18D, A26T, G29R, V33A, Q35R, R39S, I43L, R49K, A50D, L55V, I101V, I133V, Y135V, D149S, N161D, K182V, R188K; p17: G62A, V82I, C87Y, I92V, I104L; p2: T8-; p24: A14S, I115V, G116A, N183A; p6: P5T, F15L, R16M, T23A, Q30P, K31R; p7: M1V, N8P, Q9R, R11T, I12-, K47L; pro: L10I, K20R, K43T, F53I, I54V, K57R, V82A; rev: A15T, I59F, S62A, L67R, N84S, G90E, P107L; tat: E2D, I39T, S61N, L74I, G79R; vif: S95R, S116A, N122H, T155A, V166L, K181T; vpr: Q8H, S28T, P37V, I61T, I63T, A93S; vpu: S8G, V26A, I28L, L33F, K38R, P76L"}}}, {"name": "CRF39_BF1_NODE_0000001", "node_attrs": {"div": 0.1046, "clade_membership": {"value": "CRF39_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["-305A", "T467C", "A599G", "G1090A", "G1101A", "G1301A", "G1346A", "G1354C", "A1486G", "A1619G", "C1714A", "G1736A", "C1761A", "A1762C", "T1790C", "A1819G", "A1835G", "G1841A", "A1849G", "G1852A", "A1906G", "A1979G", "A2026G", "G2027A", "A2060G", "C2420T", "G2431A", "C2488T", "A2734G", "T2779G", "C2985A", "A3667G", "G3685A", "G4294A", "T4426C", "C4471T", "A4543C", "G5140A", "C5444A", "A5461C", "G5561A", "C5579T", "G5629A", "A5632T", "C5653T", "A5655C", "C6004T", "C6010T", "G6086A", "G6263A", "C6601A", "G7079A", "C7080A", "A7095G", "C7463T", "C7553A", "G7628C", "G7720A", "A7782G", "A7818G", "T8366G", "C8741T"], "INT": ["E256D"], "RT-p51": ["S359G"], "RT-p66": ["S359G"], "gp120": ["V137I", "D365N", "A409N", "N414S"], "gp41": ["E109Q", "N160S", "K172R", "F206L"], "nef": ["S8R"], "p24": ["S120N", "V124I", "D187E", "G208A"], "p6": ["A12E", "Q28T", "N47S"], "p7": ["K7R"], "pro": ["I13V", "V15I", "I36M", "N61D", "V77I", "N88D"], "rev": ["V16I"], "tat": ["T23N", "S62N", "P68L"], "vif": ["G185E"], "vpu": ["D3Y", "I9L", "L16F"]}, "labels": {"aa": "INT: E256D; RT-p51: S359G; RT-p66: S359G; gp120: V137I, D365N, A409N, N414S; gp41: E109Q, N160S, K172R, F206L; nef: S8R; p24: S120N, V124I, D187E, G208A; p6: A12E, Q28T, N47S; p7: K7R; pro: I13V, V15I, I36M, N61D, V77I, N88D; rev: V16I; tat: T23N, S62N, P68L; vif: G185E; vpu: D3Y, I9L, L16F"}}, "children": [{"name": "EU735536", "node_attrs": {"div": 0.13901, "accession": "EU735536", "clade_membership": {"value": "CRF39_BF1"}, "country": {"value": "BR"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03BRRJ327"}, "LANL_subtype": {"value": "CRF39_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C207T", "G224A", "G369A", "A380C", "T495C", "A500G", "A516C", "A518G", "G562A", "A563G", "A571T", "G585A", "T586C", "A607G", "G615A", "T635A", "T636C", "A643G", "G693A", "C722T", "C746T", "C774A", "G821A", "A860G", "A920G", "T926C", "C944G", "G1199A", "C1331T", "A1377T", "C1444T", "A1459C", "C1501T", "C1610T", "C1613T", "A1614G", "C1615T", "T1616G", "A1643G", "C1680T", "T1728G", "A1765G", "C1771T", "G1778A", "G1886A", "A1908G", "A1932G", "C2005T", "G2009A", "A2014G", "A2140G", "T2209C", "G2210A", "T2216A", "G2222A", "A2241G", "G2363A", "C2386T", "G2459A", "A2489G", "T2579G", "G2580A", "G2630A", "C2671T", "G2710A", "G2724T", "A2739T", "T2806G", "A2809G", "G2914A", "G2984A", "G3085A", "A3091G", "T3184C", "C3207T", "C3252T", "G3264A", "A3364G", "T3542C", "C3567T", "T3613C", "G3651A", "A3675C", "G3766A", "C3799T", "G3808C", "G3814A", "A3825G", "G3859A", "G3925A", "A4063G", "T4075C", "A4076C", "C4110T", "G4177A", "C4180T", "A4213G", "G4226A", "G4262A", "G4263C", "C4321T", "G4376A", "G4673A", "A4688G", "A4697T", "T4701C", "T4712C", "A4721C", "A4769T", "C4786A", "G4862A", "C4950A", "G5123A", "A5146G", "A5148C", "A5159G", "A5200G", "T5214C", "G5225A", "G5330A", "A5397C", "A5462G", "T5472A", "A5525G", "G5543A", "A5544G", "C5551T", "A5555C", "T5567A", "A5568C", "G5575A", "A5613T", "T5617G", "C5663T", "G5700A", "A5715G", "A5743C", "A5748G", "C5763T", "G5861A", "C5862A", "A5863T", "A5868C", "T5941C", "A5956C", "G5962A", "C5974A", "A5995T", "A6030G", "A6065G", "G6121A", "-6172C", "-6173A", "-6174T", "-6175C", "-6180G", "T6187C", "G6188A", "T6193C", "C6194A", "A6197G", "A6198G", "G6201A", "-6203A", "-6204G", "-6205C", "A6206G", "G6211A", "A6213G", "G6214A", "A6230G", "A6273G", "A6282G", "A6286G", "A6288G", "T6289G", "G6303A", "A6311C", "A6327G", "A6329G", "A6332C", "T6334G", "A6336-", "T6337-", "A6338-", "G6339-", "C6340-", "T6341-", "G6345A", "G6346C", "C6347A", "T6348G", "A6349T", "T6351C", "T6358C", "A6362T", "T6418C", "A6461G", "T6472C", "A6489C", "T6511C", "G6569A", "A6576C", "C6673T", "C6692A", "T6695A", "G6732A", "A6734C", "G6754A", "T6766C", "G6771A", "A6781C", "A6788G", "A6801G", "A6806-", "A6807-", "G6808-", "A6810-", "A6811-", "A6812-", "G6814A", "T6815A", "T6816G", "A6817C", "A6819G", "T6821G", "C6824A", "T6826A", "T6827C", "-6830T", "-6831T", "-6832A", "C6834T", "G6839A", "A6841G", "A6849T", "C6856T", "C6862T", "G6881A", "A6931C", "-6947A", "-6948A", "-6949C", "-6950A", "-6951C", "-6952A", "-6953G", "-6954G", "-6955A", "-6956T", "-6957A", "-6958C", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964A", "-6965A", "-6966C", "-6967T", "T7003-", "G7004-", "C7006-", "A7007-", "C7008-", "T7009-", "G7076A", "T7081C", "A7126G", "A7129G", "T7147A", "A7148C", "T7150G", "G7160-", "A7163T", "-7164A", "T7165C", "G7256A", "A7290C", "A7315G", "C7328A", "A7428G", "G7440A", "A7590C", "G7608C", "T7609A", "C7625G", "G7627A", "G7642A", "T7685A", "A7688C", "T7690A", "A7692G", "G7702A", "A7705G", "A7706C", "A7713C", "T7751C", "T7796A", "A7799C", "A7918T", "A7929G", "T7930C", "A7931C", "G7965A", "C8065T", "G8070T", "G8076A", "C8119A", "G8125A", "C8126A", "T8154A", "A8163G", "T8172A", "A8193G", "T8256C", "C8450T", "C8514G", "G8531T", "G8589T", "T8600C", "G8643A", "T8646C", "G8647A", "T8746A", "C8747T", "G8762A", "G8787A", "A8804G", "G8806A", "A8819G", "T8867C", "G8868C", "C8873A", "G8885A", "C8934G", "A8950T", "G8955A", "C8966T", "C8975A", "C9012T"], "INT": ["E11D", "N17S", "M50I", "I101L", "T112I", "V151I", "G163T", "V201I"], "RT-p51": ["A39T", "E43K", "K49R", "V90I", "N103K", "E122K", "I132V", "C162D", "V179I", "W210L", "Y215F", "D237E", "A297K", "S335G", "A371V", "T386I", "R390K", "I435V"], "RT-p66": ["A39T", "E43K", "K49R", "V90I", "N103K", "E122K", "I132V", "C162D", "V179I", "W210L", "Y215F", "D237E", "A297K", "S335G", "A371V", "T386I", "R390K", "I435V", "S491L", "S519N", "E524Q", "K527T"], "gp120": ["A3N", "N5T", "E34D", "E59G", "N71D", "L106A", "K107I", "E108N", "-109G", "-110T", "-111N", "-112T", "-113N", "G124-", "A125-", "I126-", "Q127-", "N128-", "K140R", "K143R", "H145R", "R150K", "I153L", "N160T", "S162-", "Y163-", "R164-", "L165-", "I166-", "N167-", "T170S", "K203E", "K212T", "E239K", "H280N", "L281I", "T292E", "G293Q", "E294I", "S306N", "Q309H", "K312E", "Q316R", "K318-", "K320-", "-329K", "K332I", "V343I", "-367G", "-368Y", "A408T", "N432Q", "V468I", "K479T"], "gp41": ["L9I", "N42S", "N96T", "S102T", "Q108E", "S128T", "D129Q", "E130G", "I135L", "E137A", "K154Q", "N166H", "H209R", "I210L", "G221E", "S256I", "L275M", "L284H", "N287S", "K297R", "V318A", "I319L"], "nef": ["L58V", "E63D", "A83S", "W102H", "D149N", "R155K", "E176P", "D177E", "K182M", "L198V", "Y203F", "D205N"], "p17": ["E12K", "R15S", "S54P", "I61L", "R76K", "Y79F", "V84T", "K91R", "V94I", "K103R", "A120T"], "p2": ["A7V", "Q10P", "N12T"], "p24": ["L15I", "T216S", "S225G"], "p6": ["L1F", "F15L", "F17V", "E29G", "K31I"], "p7": ["T50V"], "pro": ["D30N", "N37S", "K45R", "E60D", "A71T", "I72M"], "rev": ["R4G", "E10R", "K14Q", "Y18T", "Y28P", "L73F", "Q74H", "Q91K", "A93N"], "tat": ["R7S", "K29R", "F32L", "K50R", "R56Q", "P59S", "Q60P", "I64N", "D67N", "L74A", "E86K"], "vif": ["M29I", "E37D", "F39L", "E45D", "E61D", "T67K", "H187R", "T188P"], "vpr": ["D7N", "Y15S", "T19A", "G41S"], "vpu": ["L4V", "A19V", "I46L"]}, "labels": {"aa": "INT: E11D, N17S, M50I, I101L, T112I, V151I, G163T, V201I; RT-p51: A39T, E43K, K49R, V90I, N103K, E122K, I132V, C162D, V179I, W210L, Y215F, D237E, A297K, S335G, A371V, T386I, R390K, I435V; RT-p66: A39T, E43K, K49R, V90I, N103K, E122K, I132V, C162D, V179I, W210L, Y215F, D237E, A297K, S335G, A371V, T386I, R390K, I435V, S491L, S519N, E524Q, K527T; gp120: A3N, N5T, E34D, E59G, N71D, L106A, K107I, E108N, -109G, -110T, -111N, -112T, -113N, G124-, A125-, I126-, Q127-, N128-, K140R, K143R, H145R, R150K, I153L, N160T, S162-, Y163-, R164-, L165-, I166-, N167-, T170S, K203E, K212T, E239K, H280N, L281I, T292E, G293Q, E294I, S306N, Q309H, K312E, Q316R, K318-, K320-, -329K, K332I, V343I, -367G, -368Y, A408T, N432Q, V468I, K479T; gp41: L9I, N42S, N96T, S102T, Q108E, S128T, D129Q, E130G, I135L, E137A, K154Q, N166H, H209R, I210L, G221E, S256I, L275M, L284H, N287S, K297R, V318A, I319L; nef: L58V, E63D, A83S, W102H, D149N, R155K, E176P, D177E, K182M, L198V, Y203F, D205N; p17: E12K, R15S, S54P, I61L, R76K, Y79F, V84T, K91R, V94I, K103R, A120T; p2: A7V, Q10P, N12T; p24: L15I, T216S, S225G; p6: L1F, F15L, F17V, E29G, K31I; p7: T50V; pro: D30N, N37S, K45R, E60D, A71T, I72M; rev: R4G, E10R, K14Q, Y18T, Y28P, L73F, Q74H, Q91K, A93N; tat: R7S, K29R, F32L, K50R, R56Q, P59S, Q60P, I64N, D67N, L74A, E86K; vif: M29I, E37D, F39L, E45D, E61D, T67K, H187R, T188P; vpr: D7N, Y15S, T19A, G41S; vpu: L4V, A19V, I46L"}}}, {"name": "EU735534", "node_attrs": {"div": 0.13813, "accession": "EU735534", "clade_membership": {"value": "CRF39_BF1"}, "country": {"value": "BR"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03BRRJ103"}, "LANL_subtype": {"value": "CRF39_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A152-", "T201C", "C258T", "A301G", "A359G", "A380G", "A425G", "A431G", "A435C", "G524A", "C558T", "T560A", "G614T", "A730T", "C890T", "G1109A", "T1214C", "A1271T", "C1304T", "C1316T", "A1382C", "G1404A", "C1453A", "C1460T", "A1461G", "G1498A", "A1536G", "A1543G", "C1610A", "T1616A", "A1656C", "G1687C", "C1722T", "A1738G", "A1756G", "A1768T", "C1826A", "A1840G", "T1903A", "G1936A", "A1962G", "A1969G", "T1978A", "A2007G", "C2010T", "C2044A", "A2051G", "T2062C", "T2066A", "T2077G", "A2125G", "G2154A", "G2213T", "A2214T", "A2215T", "A2295G", "A2297G", "T2315G", "T2319C", "T2393A", "A2404C", "G2447A", "C2452A", "C2615G", "C2644T", "C2664G", "T2668A", "T2672C", "A2699G", "G2727A", "A2750G", "A2752C", "T2778A", "T2788C", "A2818G", "G2830A", "G2833A", "G2923A", "T3002C", "G3029A", "A3031T", "C3067A", "G3098A", "A3138T", "G3154A", "G3162A", "G3168A", "A3192G", "A3199G", "T3221G", "C3232T", "G3259A", "G3398A", "A3434C", "T3449G", "T3450C", "G3490A", "C3500T", "A3502C", "C3504T", "G3523A", "G3529A", "A3562G", "C3589T", "C3653A", "C3665G", "G3755T", "T3844C", "A3910G", "T3977C", "G4057A", "A4243T", "T4405A", "A4407G", "T4672A", "T4701G", "T4703C", "C4726A", "C4728A", "G4774A", "C4820A", "G5009A", "A5048C", "A5059G", "G5082A", "C5091T", "C5117T", "A5119G", "G5153C", "A5186G", "C5213A", "T5237C", "T5239C", "G5276A", "T5333C", "A5335G", "C5356A", "G5359C", "A5462T", "T5471A", "T5487C", "G5543C", "A5566T", "G5596A", "A5703G", "A5712G", "G5729A", "G5730T", "G5737A", "G5806A", "A5907G", "A5908G", "A5911C", "G5958C", "C5998T", "G6009A", "T6024A", "T6025G", "G6029A", "A6050G", "T6064C", "C6115T", "G6133A", "A6136G", "A6142C", "C6165G", "C6171T", "-6172T", "-6180T", "C6181T", "C6189A", "A6191T", "T6196A", "T6220G", "C6221G", "A6230C", "A6323G", "C6325T", "A6335G", "A6336G", "T6337C", "T6341A", "A6353C", "C6382T", "A6438T", "G6490A", "A6576G", "G6611A", "T6641C", "C6667A", "A6672G", "A6686G", "T6688C", "G6725A", "A6734G", "A6776G", "T6794A", "-6809A", "A6810G", "A6840C", "A6841C", "A6850G", "C6883T", "A6910G", "-6989A", "-6990A", "-6991C", "-6992A", "-6993C", "-6994A", "-6995G", "-6996T", "-6997A", "-6998T", "-6999C", "-7000C", "-7001A", "-7002A", "-7005G", "A7025C", "C7078A", "A7085G", "C7089A", "A7107G", "A7148G", "A7149C", "T7156G", "A7158C", "A7163-", "T7165-", "C7170T", "G7269A", "A7313T", "A7399G", "A7573G", "C7597A", "C7603T", "T7609C", "G7641A", "A7668G", "T7681C", "G7711A", "G7712A", "A7713T", "A7722T", "G7759T", "C7763A", "A7800G", "C7813T", "A7820T", "G7846A", "G7868T", "A7929T", "C7943A", "C8005T", "G8008C", "A8029C", "G8110A", "A8118G", "G8130C", "G8134A", "T8164C", "C8165A", "G8173A", "A8180G", "C8223T", "C8258A", "C8274G", "A8276T", "A8323T", "G8368A", "T8371A", "G8377A", "A8388G", "G8398A", "G8402A", "A8403G", "G8404A", "G8407A", "C8412-", "C8413-", "T8414-", "G8418A", "C8419T", "C8422A", "G8424C", "G8427A", "G8428C", "G8429C", "G8430-", "T8431-", "G8432-", "G8433C", "G8502A", "G8534T", "A8537T", "A8570G", "C8590G", "G8634C", "C8648G", "C8684T", "T8740C", "A8783T", "G8795T", "T8813C", "G8822A", "G8875A", "A8876G", "T8887A", "A8892G", "A8893T", "G8905A", "A8917G", "G8922A"], "INT": ["K156N", "K211R"], "RT-p51": ["R20K", "E40F", "M41L", "D67G", "S68G", "L74V", "V75A", "L100I", "V118I", "Q174E", "A190G", "I202V", "R211K", "K219D", "L228Q", "A297E", "E312N", "D324E", "N348I", "R356K", "R358K", "K366R", "S376A"], "RT-p66": ["R20K", "E40F", "M41L", "D67G", "S68G", "L74V", "V75A", "L100I", "V118I", "Q174E", "A190G", "I202V", "R211K", "K219D", "L228Q", "A297E", "E312N", "D324E", "N348I", "R356K", "R358K", "K366R", "S376A", "N447H", "L452A", "L469F", "T470M", "H483Y", "Q520K", "A554S"], "gp120": ["K18R", "E19D", "R35T", "S52N", "V57E", "E59K", "N66D", "T104S", "-122E", "-123A", "I126L", "N157D", "N161G", "N167H", "Y195F", "T241S", "A253T", "S263P", "N273S", "S278G", "T308A", "L314I", "-319R", "-328A", "-367V", "-368S", "I411V", "A412E", "N418S", "N432G", "N433K", "N434K", "-436T", "T439I", "R472K"], "gp41": ["M4L", "K46R", "G113E", "K122R", "D129N", "E137I", "N140I", "L152F", "T165S", "N166S", "I173L", "A189S", "H209L", "L242F", "H258R", "E272G", "R276T", "L288I", "Q290L", "S293G", "T307I", "T324R", "I325F", "L340F"], "nef": ["S9N", "I10K", "G12E", "I16V", "R19K", "M20I", "R22-", "T23-", "P24-", "P25-", "A26-", "A27-", "E28-", "G29-", "V30-", "G31-", "D54N", "E64D", "A83G", "E98Q", "I101V", "I133T", "Y135F", "E151D", "E176A", "R178K", "K184V", "R188H", "H192R", "V194M"], "p1": ["N9H"], "p17": ["I34L", "E93D", "Y132F"], "p2": ["I13V"], "p24": ["E71D", "E180D"], "p6": ["S3T", "E20G", "Q26R", "Q30L", "K31T"], "p7": ["R11K", "I12T", "I24V", "K26R", "D48E"], "pro": ["L10I", "D35E", "M46I", "K55R", "K70R", "A71V", "I85V", "L90M", "I93M"], "rev": ["E10Q", "R17S", "T32K", "R53C", "E54Q", "S61R", "D88N", "E94D", "G96R", "S106H", "V109I", "E111G"], "tat": ["K29L", "F32Y", "R56P", "I64L", "H78Q"], "vif": ["M29K", "F39V", "T47N", "H48N", "R63K", "D78E", "N122H", "K158R", "V166I", "Q178R", "M189I"], "vpr": ["P5S", "E17Q", "S28G", "P37I", "Y45H", "E58K", "Q77R", "T84N", "R85P"], "vpu": ["R41N", "E44K", "V71M"]}, "labels": {"aa": "INT: K156N, K211R; RT-p51: R20K, E40F, M41L, D67G, S68G, L74V, V75A, L100I, V118I, Q174E, A190G, I202V, R211K, K219D, L228Q, A297E, E312N, D324E, N348I, R356K, R358K, K366R, S376A; RT-p66: R20K, E40F, M41L, D67G, S68G, L74V, V75A, L100I, V118I, Q174E, A190G, I202V, R211K, K219D, L228Q, A297E, E312N, D324E, N348I, R356K, R358K, K366R, S376A, N447H, L452A, L469F, T470M, H483Y, Q520K, A554S; gp120: K18R, E19D, R35T, S52N, V57E, E59K, N66D, T104S, -122E, -123A, I126L, N157D, N161G, N167H, Y195F, T241S, A253T, S263P, N273S, S278G, T308A, L314I, -319R, -328A, -367V, -368S, I411V, A412E, N418S, N432G, N433K, N434K, -436T, T439I, R472K; gp41: M4L, K46R, G113E, K122R, D129N, E137I, N140I, L152F, T165S, N166S, I173L, A189S, H209L, L242F, H258R, E272G, R276T, L288I, Q290L, S293G, T307I, T324R, I325F, L340F; nef: S9N, I10K, G12E, I16V, R19K, M20I, R22-, T23-, P24-, P25-, A26-, A27-, E28-, G29-, V30-, G31-, D54N, E64D, A83G, E98Q, I101V, I133T, Y135F, E151D, E176A, R178K, K184V, R188H, H192R, V194M; p1: N9H; p17: I34L, E93D, Y132F; p2: I13V; p24: E71D, E180D; p6: S3T, E20G, Q26R, Q30L, K31T; p7: R11K, I12T, I24V, K26R, D48E; pro: L10I, D35E, M46I, K55R, K70R, A71V, I85V, L90M, I93M; rev: E10Q, R17S, T32K, R53C, E54Q, S61R, D88N, E94D, G96R, S106H, V109I, E111G; tat: K29L, F32Y, R56P, I64L, H78Q; vif: M29K, F39V, T47N, H48N, R63K, D78E, N122H, K158R, V166I, Q178R, M189I; vpr: P5S, E17Q, S28G, P37I, Y45H, E58K, Q77R, T84N, R85P; vpu: R41N, E44K, V71M"}}}]}]}, {"name": "NODE_0000166", "node_attrs": {"div": 0.07158, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C36-", "G47A", "T86-", "T87-", "G88-", "A89-", "G90-", "T91-", "G92-", "C93-", "T94-", "T95-", "G455A", "G562A", "T749C", "A810G", "G998A", "A1656C", "G1687A", "A1691G", "G2602T", "G2761A", "T2770C", "A3019G", "A3058G", "G3142A", "G4677A", "A5448T", "A5548C", "A5557G", "C5578T", "G5581C", "C5584T", "T5602C", "T5611C", "A5615C", "G5619A", "T5621A", "G5623A", "C5624T", "C5636T", "A5644G", "C5653G", "A5677T", "T5679C", "A5687T", "T5688C", "C5704A", "G5706A", "G5707T", "A5725G", "T5734A", "A5735T", "A5739T", "G5784A", "G5791T", "G5800-", "G5801-", "A5804-", "A5805-", "T5807-", "G5808-", "G5809-", "G5810-", "C5825A", "T5827C", "A5830G", "T5831C", "G5836T", "A5848G", "C5869A", "T5920C", "A5956T", "A5958C", "C5974T", "T5980C", "T6025A", "C6026T", "A6037G", "T6052C", "A6130G", "-6203G", "G6211-", "A6329G", "T6343C", "G6797A", "A6819G", "C6829T", "-6951C", "G7160A", "-7164C", "G7366A", "A7411T", "G7630T", "C7852T", "G7873A", "A7898C", "T7912A", "A7921C", "T7930C", "A7931C", "A7937G", "G7938C", "C7988A", "A7989G", "G7992A", "C8020T", "G8036A", "A8051C", "A8055G", "C8092A", "A8093C", "A8098G", "C8103T", "C8119A", "C8156T", "T8157G", "A8204G", "T8215C", "A8323G", "A8426T", "G8441A", "A8446G", "T8451C", "A8453G", "G8458A", "G8461A", "G8462T", "G8465A", "T8471C", "C8477T", "C8499G", "T8506G", "G8507T", "G8516A", "A8540G", "T8585C", "C8603T", "G8868C"], "INT": ["G283S"], "RT-p51": ["E169D", "Q394L"], "RT-p66": ["E169D", "T173A"], "gp120": ["E34D", "K35T", "G307R", "K312N"], "gp41": ["E110D", "S212A", "Q229R", "G230D", "V245I", "N251S", "F263L", "I264L", "A267V", "R273L", "G274L", "L285W", "I301V"], "nef": ["E28D", "Q35R", "R39K", "R40H", "P53A", "L55C"], "p1": ["N9H"], "p17": ["R76K"], "p24": ["L6I", "I27V", "S225G"], "p6": ["S3N"], "rev": ["Y18L", "Y28P", "K30S", "A47E", "R58W", "C63Y", "H82T", "I83L", "N84D", "S103L"], "tat": ["T58A", "S61D", "I64T", "P68S", "V69L", "P70S", "L74T", "A77P"], "vif": ["V31I"], "vpu": ["S2Q", "D3P", "L5Q", "A6I", "I7L", "I13V", "L16A", "Y27L", "L33I", "V34L", "N40D", "Y43I", "E44D", "D60E", "A61L", "E62S", "E63A", "A65V", "A66E", "L67M", "E70-", "G72-", "P73H", "F74-", "I75A", "G77W", "I79V", "N81D"]}, "labels": {"aa": "INT: G283S; RT-p51: E169D, Q394L; RT-p66: E169D, T173A; gp120: E34D, K35T, G307R, K312N; gp41: E110D, S212A, Q229R, G230D, V245I, N251S, F263L, I264L, A267V, R273L, G274L, L285W, I301V; nef: E28D, Q35R, R39K, R40H, P53A, L55C; p1: N9H; p17: R76K; p24: L6I, I27V, S225G; p6: S3N; rev: Y18L, Y28P, K30S, A47E, R58W, C63Y, H82T, I83L, N84D, S103L; tat: T58A, S61D, I64T, P68S, V69L, P70S, L74T, A77P; vif: V31I; vpu: S2Q, D3P, L5Q, A6I, I7L, I13V, L16A, Y27L, L33I, V34L, N40D, Y43I, E44D, D60E, A61L, E62S, E63A, A65V, A66E, L67M, E70-, G72-, P73H, F74-, I75A, G77W, I79V, N81D"}}, "children": [{"name": "NODE_0000167", "node_attrs": {"div": 0.07799, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-305A", "A557G", "C747A", "A806G", "A809G", "C827T", "C1013T", "A1277G", "-1452A", "A1670C", "A2818G", "A3224G", "T3449A", "T3450A", "T3492C", "A3511C", "A3524G", "T3544G", "G3770A", "A3802G", "A3808C", "G4145A", "G4268A", "T4435C", "C4534T", "A4543C", "G4622A", "C4724T", "A4769T", "T4772G", "A4778G", "G4802A", "G4887A", "T4919C", "A5037G", "A5086C", "G5137A", "C5214T", "T5356C", "G5359C", "G5790A", "G5803-", "G5861A", "-6198C", "-6216A", "T6337C", "T6688-", "T6690-", "C6692-", "C6792T", "C6800A", "-7005A", "G7633C", "G7658C", "G8105A", "T8495C", "G8654A", "A8851T"], "INT": ["E11D", "V165I"], "RT-p51": ["T377V"], "RT-p66": ["L452K", "V466A", "T477A", "H483Q", "V559I"], "gp120": ["A3T", "N5K", "T313M", "Q316K", "-436K"], "gp41": ["M7L", "I84L", "E119Q"], "tat": ["K24N"], "vif": ["E61D", "G101N", "N134E", "K167T", "R184K"], "vpr": ["I84T", "R85P"], "vpu": ["T24S"]}, "labels": {"aa": "INT: E11D, V165I; RT-p51: T377V; RT-p66: L452K, V466A, T477A, H483Q, V559I; gp120: A3T, N5K, T313M, Q316K, -436K; gp41: M7L, I84L, E119Q; tat: K24N; vif: E61D, G101N, N134E, K167T, R184K; vpr: I84T, R85P; vpu: T24S"}}, "children": [{"name": "results/subtype_trees/CRF72_BF1.nwk", "node_attrs": {"div": 0.09725, "clade_membership": {"value": "CRF72_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T49A", "A54C", "C57A", "G62A", "G68-", "C69-", "C70-", "T71-", "C72-", "A73-", "A74-", "T75-", "A76-", "A77-", "A78-", "G79-", "C80-", "T81-", "T82-", "G83-", "C84-", "C85-", "A161C", "A227C", "A494C", "A571T", "G614T", "T641G", "-704A", "-709G", "-711A", "-713C", "-714C", "C774A", "T861G", "G1101A", "A1151G", "A1278G", "A1279G", "A1397G", "A1400G", "-1455G", "G1498A", "A1828G", "A1979C", "C1981A", "T1996C", "G2008A", "C2211T", "C2281T", "A2332G", "G2431A", "A2524G", "G2539A", "A2612G", "C2638T", "T2806C", "C2909G", "G3283A", "T3292A", "C3415T", "A3439G", "T3445C", "A3490G", "T3613C", "T3644A", "A3703G", "C3763T", "C4015T", "T4024C", "A4025C", "T4042C", "G4051A", "G4057A", "G4060A", "A4069C", "C4078A", "T4079C", "T4165C", "G4279A", "A4285G", "T4988A", "A5049G", "A5069C", "C5213G", "A5215G", "A5233G", "C5361T", "A5362C", "A5447C", "C5495A", "G5546A", "G5558A", "A5576C", "A5622C", "G5626T", "A5659C", "A5685G", "G5781T", 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"A50-", "T51-", "A56V", "A83G", "E108D", "D149E", "D177E", "K182M"], "p17": ["Y79F", "E93D", "D102E"], "p24": ["L15I", "S44A", "V124I", "N183G"], "p7": ["R11K"], "pro": ["N61Q"], "rev": ["E11N", "A15T", "I21L", "A54T", "E57G", "S61N", "S86N"], "tat": ["T40K", "A58P", "D67A", "S75T", "S87P"], "vif": ["T151A", "T155A"], "vpr": ["P37V", "Q86S"], "vpu": ["Q5Y", "I18L", "L27F", "E58D", "V79I", "N80D"]}, "labels": {"aa": "INT: I84L; RT-p51: T39M, D399E; RT-p66: T39M, D399E, L517I; gp120: V56I, N71D, N160-, A291T, -326P, -328A, -384D, T439I; gp41: I24V, A189S, K199Q, I210H, I222T, V235E, N239D, A243T, D247V, A268T, A281I; nef: A49N, A50-, T51-, A56V, A83G, E108D, D149E, D177E, K182M; p17: Y79F, E93D, D102E; p24: L15I, S44A, V124I, N183G; p7: R11K; pro: N61Q; rev: E11N, A15T, I21L, A54T, E57G, S61N, S86N; tat: T40K, A58P, D67A, S75T, S87P; vif: T151A, T155A; vpr: P37V, Q86S; vpu: Q5Y, I18L, L27F, E58D, V79I, N80D", "clade": "CRF72_BF1"}}, "children": [{"name": "CRF72_BF1_NODE_0000001", "node_attrs": {"div": 0.1003, "clade_membership": {"value": "CRF72_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "G424A", "A530G", "G1476A", "A1772G", "A2764G", "G3224C", "A4021G", "A4733G", "A4951G", "A5015G", "A5059G", "T5799-", "G5802-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819G", "-5820G", "-5821G", "-5822G", "-5823G", "A5856G", "A6022G", "A6185C", "T6187A", "T6193C", "C6233A", "G6391A", "A6686-", "G6687-", "-6692G", "-6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6702T", "G6714A", "A6810G", "G6814A", "-6993G", "A7152G", "A7290C", "G7291A", "A7315G", "A7744G", "T8016C", "A8143G", "G8144A", "T8290C", "A8537G", "G8540A", "C8690T"], "gp120": ["N1S", "I56M", "-110T", "-113N", "Q127K", "S278G", "R287Q", "K479T"], "gp41": ["R236T", "V238A"], "p17": ["K26N"], "p2": ["I13-"], "rev": ["T54N", "S99D"], "vif": ["N122S", "K158R"], "vpu": ["-74L"]}, "labels": {"aa": "gp120: N1S, I56M, -110T, -113N, Q127K, S278G, R287Q, K479T; gp41: R236T, V238A; p17: K26N; p2: I13-; rev: T54N, S99D; vif: N122S, K158R; vpu: -74L"}}, "children": [{"name": "EF637052", "node_attrs": {"div": 0.14545, "accession": "EF637052", "clade_membership": {"value": "CRF72_BF1"}, "country": {"value": "BR"}, "date": {"value": 2003.0}, "Strain_name": {"value": "BREPM1029"}, "LANL_subtype": {"value": "CRF72_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G254T", "G270A", "A303-", "A304-", "A305-", "G325A", "G333A", "A371T", "G413C", "A423C", "A431G", "T479C", "A492T", "C494A", "T495G", "C496G", "A516C", "T534G", "C536A", "G557A", "G585A", "T586C", "T602C", "G629A", "G641A", "A697G", "A706G", "G717A", "T718C", "T827C", "A836G", "C1005G", "G1022A", "A1088C", "A1097G", "C1118T", "A1124G", "G1256A", "G1278A", "G1279A", "T1422C", "C1439T", "G1443A", "A1449G", "A1450G", "C1453T", "C1456T", "-1458A", "-1459C", "A1461-", "T1462-", "A1474G", "G1503A", "A1526G", "C1541A", "C1613T", "G1664A", "C1670A", "C1724T", "C1767A", "A1804G", "C1825A", "C1826G", "G1828A", "A1843T", "C1979A", "A1981C", "C1985A", "T1986G", "C1996T", "A2008G", "C2047T", "G2065A", "T2211A", "A2212T", "G2224A", "A2241G", "A2293G", "G2362A", "T2383C", "A2406G", "G2422A", "A2431G", "T2453C", "T2464A", "G2524A", "A2539C", "A2551G", "C2626A", "T2638C", "C2671T", "G2714A", "A2716C", "A2726C", "A2727G", "C2749T", "C2806T", "C2885T", "G2909C", "A2925G", "A2950G", "G2984A", "A2989G", "G3019A", "A3080C", "G3100A", "A3142G", "G3168A", "C3175A", "G3211A", "T3225A", "T3256C", "G3264A", "C3266T", "A3283G", "T3415C", "G3431T", "G3439A", "A3481G", "G3490A", "G3491A", "C3492T", "T3497C", "G3520A", "T3550C", "A3562G", "C3567T", "G3574A", "C3589T", "A3608G", "C3613T", "A3630G", "A3684G", "G3703A", "T3763C", "A3805G", "C3823T", "A3825C", "T3865A", "G3884A", "T4015C", "A4084G", "A4109G", "T4117C", "A4130C", "A4235C", "G4237A", "G4267A", "T4450C", "G4495A", "A4522G", "C4543A", "G4582A", "T4606G", "A4725C", "T4742C", "C4757T", "T4769G", "A4802G", "T4832A", "G4861A", "A4865G", "A4887C", "C4911A", "T4969G", "G5049C", "C5052T", "A5061T", "T5062C", "C5069A", "A5119G", "G5131A", "A5159G", "A5166G", "T5203C", "T5209C", "T5286C", "A5288C", "G5289A", "C5359G", "A5360C", "T5361A", "C5362G", "C5406T", "T5415C", "T5424C", "T5439A", "A5446T", "G5534A", "A5546G", "A5594G", "C5602T", "C5612T", "C5614A", "C5659A", "T5670C", "C5679T", "T5695A", "A5696T", "G5700A", "A5712G", "C5797A", "G5839A", "A5915G", "T5974C", "A6030G", "C6116T", "T6154G", "A6167G", "-6170T", "-6171T", "-6172C", "-6173A", "-6174A", "-6175G", "-6180A", "C6189A", "C6190T", "A6191G", "C6198G", "-6201G", "C6202T", "G6203C", "G6204A", "-6205A", "-6207G", "C6208T", "C6209A", "T6210C", "-6211C", "-6212C", "-6213T", "-6214A", "G6215A", "A6216G", "C6221T", "C6238T", "A6311G", "A6326G", "G6329A", "A6330G", "T6331A", "A6332G", "A6333C", "T6334A", "C6337T", "A6338G", "C6412A", "T6460G", "G6466T", "C6482T", "A6489G", "C6499T", "T6545C", "A6581G", "T6602A", "C6618T", "C6619A", "-6701T", "A6715G", "G6773A", "T6787G", "A6788G", "T6792G", "A6798G", "A6800C", "A6811C", "T6815G", "A6817T", "T6821G", "C6822G", "T6823G", "C6824T", "A6825C", "T6826A", "-6830C", "-6831C", "-6832C", "A6839G", "A6840C", "C6856T", "C6874T", "T6922C", "A6935G", "T6938C", "G6940A", "-6947A", "-6948A", "-6949C", "-6950G", "-6952A", "-6953C", "-6954T", "-6955G", "-6956T", "-6957T", "-6958T", "-6959A", "-6960A", "-6961T", "-6973G", "-6974A", "-6975C", "-6976A", "-6977C", "-6978A", "-6979G", "-6980G", "-6981A", "-6982G", "-6983T", "-6984C", "-6985A", "-6986A", "-6987A", "-6988T", "-6990G", "-6994T", "-6995G", "-6996A", "C7008A", "C7014T", "G7076A", "C7078T", "C7084T", "A7126T", "A7138G", "G7151A", "A7154G", "A7160C", "G7166C", "C7171T", "T7174C", "T7192C", "A7240G", "A7299G", "G7307-", "T7308-", "G7309-", "G7311C", "A7313G", "G7319C", "C7320T", "T7321G", "G7324T", "A7373C", "A7398T", "T7403C", "A7420G", "A7428G", "T7512A", "A7590G", "T7624A", "A7626T", "G7628A", "G7642C", "C7651T", "A7688G", "G7712A", "A7713T", "G7714A", "G7729A", "A7747C", "A7847G", "G7862A", "G7918A", "C7926T", "C7951A", "A7963C", "A7992G", "A7998G", "C8004T", "G8006A", "A8007G", "T8013C", "C8065T", "G8076A", "A8079G", "C8093G", "T8103C", "G8107A", "A8128G", "C8171A", "G8173A", "G8243T", "T8277C", "C8294A", "A8297G", "C8320T", "G8323T", "G8373A", "T8384A", "G8429A", "G8436T", "T8440C", "G8453A", "A8458G", "A8469C", "G8476C", "C8477T", "-8486A", "-8487G", "-8488C", "-8489A", "-8490A", "G8502A", "A8503C", "T8509C", "C8543A", "G8561A", "A8580G", "C8581A", "T8595G", "A8655C", "A8660G", "C8666T", "C8699T", "G8732A", "T8740C", "G8795C", "G8796A", "A8805G", "T8851A", "T8864C", "A8870G", "A8879C", "G8880A", "T8881C", "G8882A", "G8885A", "A8922G", "C8934A", "T8935A", "A8947T", "C8951T", "-8971C", "C9012T"], "INT": ["N17T", "V37I", "T112A", "S119R", "M154L"], "RT-p51": ["M39N", "K49R", "K104R", "D123E", "D177E", "E207N", "K211R", "K277R", "A297T", "I329L", "R358K", "V377Q", "R390K"], "RT-p66": ["M39N", "K49R", "K104R", "D123E", "D177E", "E207N", "K211R", "K277R", "A297T", "I329L", "R358K", "L377Q", "R390K", "A446S", "A466I", "S468P", "S491L", "I505V", "K512R", "K530R"], "gp120": ["T21A", "E59G", "N105D", "-106F", "-107K", "-109D", "-111N", "-112D", "-114S", "-115S", "-116Q", "-117S", "-118T", "-119L", "-120R", "-121E", "-123S", "I153V", "N159G", "-160S", "N161G", "S162E", "D202E", "K204N", "P210S", "K212R", "I243V", "S250T", "T255I", "I281L", "N311K", "N312E", "M313R", "E315R", "K316Q", "N327-", "K329-", "D365N", "T366A", "-367L", "-368F", "-378D", "T385N", "T387I", "A408T", "N418R", "N434G", "K436Q", "E438Q", "K482R"], "gp41": ["V2A", "G3V", "M4-", "A6L", "L7F", "V24L", "Q32L", "N42S", "L70Q", "N96S", "Q108L", "D109N", "E137I", "E148D", "I182V", "V187I", "T208I", "E220D", "D230G", "D232G", "S234F", "E235R", "L237S", "H259R", "L264V", "V267A", "Q290K", "G314W", "H331N", "I332V", "L340F"], "nef": ["V11I", "A32S", "V33A", "K39R", "I43L", "S45T", "N49A", "-50T", "-51N", "D54T", "V56A", "E63D", "T80D", "K105Q", "I133T", "E151D", "E152K", "K155E", "E176P", "E179D", "V180T", "L198K", "Y202F"], "p17": ["E12D", "R30Q", "T53S", "S54G", "I61L", "S67A", "V84T", "D121G", "N124S", "V128T"], "p2": ["A7T", "N9G", "T10I", "A11V", "-12T"], "p24": ["P92A", "G183N"], "p6": ["Q30K", "K42R", "P49Q"], "p7": ["K3R", "V13I"], "pro": ["L10V", "Q61N", "L63S"], "rev": ["D7N", "N11D", "R53Q", "L73F", "T82S", "E87K", "T94A", "A108E", "V109I"], "tat": ["N24S", "R53K", "P73S", "P81Q", "K85T"], "vif": ["V7G", "T47P", "D61E", "R92K", "N101H", "L109M", "I128R", "A155P", "P156S", "I159S", "Q178R", "G182D"], "vpr": ["T19A", "E21G", "I61T", "R62Q", "P85R", "S86R"], "vpu": ["Q2L", "P3T", "A16V", "L18I", "Y30I", "E60D", "L61Q", "S62E", "A63E", "V65S", "E66A", "G68-", "-69V", "-70E", "-71R", "-72G", "D78N"]}, "labels": {"aa": "INT: N17T, V37I, T112A, S119R, M154L; RT-p51: M39N, K49R, K104R, D123E, D177E, E207N, K211R, K277R, A297T, I329L, R358K, V377Q, R390K; RT-p66: M39N, K49R, K104R, D123E, D177E, E207N, K211R, K277R, A297T, I329L, R358K, L377Q, R390K, A446S, A466I, S468P, S491L, I505V, K512R, K530R; gp120: T21A, E59G, N105D, -106F, -107K, -109D, -111N, -112D, -114S, -115S, -116Q, -117S, -118T, -119L, -120R, -121E, -123S, I153V, N159G, -160S, N161G, S162E, D202E, K204N, P210S, K212R, I243V, S250T, T255I, I281L, N311K, N312E, M313R, E315R, K316Q, N327-, K329-, D365N, T366A, -367L, -368F, -378D, T385N, T387I, A408T, N418R, N434G, K436Q, E438Q, K482R; gp41: V2A, G3V, M4-, A6L, L7F, V24L, Q32L, N42S, L70Q, N96S, Q108L, D109N, E137I, E148D, I182V, V187I, T208I, E220D, D230G, D232G, S234F, E235R, L237S, H259R, L264V, V267A, Q290K, G314W, H331N, I332V, L340F; nef: V11I, A32S, V33A, K39R, I43L, S45T, N49A, -50T, -51N, D54T, V56A, E63D, T80D, K105Q, I133T, E151D, E152K, K155E, E176P, E179D, V180T, L198K, Y202F; p17: E12D, R30Q, T53S, S54G, I61L, S67A, V84T, D121G, N124S, V128T; p2: A7T, N9G, T10I, A11V, -12T; p24: P92A, G183N; p6: Q30K, K42R, P49Q; p7: K3R, V13I; pro: L10V, Q61N, L63S; rev: D7N, N11D, R53Q, L73F, T82S, E87K, T94A, A108E, V109I; tat: N24S, R53K, P73S, P81Q, K85T; vif: V7G, T47P, D61E, R92K, N101H, L109M, I128R, A155P, P156S, I159S, Q178R, G182D; vpr: T19A, E21G, I61T, R62Q, P85R, S86R; vpu: Q2L, P3T, A16V, L18I, Y30I, E60D, L61Q, S62E, A63E, V65S, E66A, G68-, -69V, -70E, -71R, -72G, D78N"}}}, {"name": "KJ671534", "node_attrs": {"div": 0.14317, "accession": "KJ671534", "clade_membership": {"value": "CRF72_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_MG002"}, "LANL_subtype": {"value": "CRF72_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G10A", "G15-", "A16-", "T22-", "C23-", "T24-", "G25-", "A26-", "G27-", "C28-", "C29-", "T30-", "G31-", "G32-", "G33-", "A34-", "G35-", "T37-", "C38-", "T39-", "C40-", "T41-", "G43T", "T45A", "A46C", "A66G", "C96-", "A97-", "T100C", "T153C", "T200G", "T201C", "G206A", "G224C", "G265A", "C287A", "T288C", "A374G", "A386G", "A388G", "G407A", "A410G", "G413T", "A497G", "G579A", "A607G", "G677A", "C691A", "A692G", "C707A", "A708G", "A715C", "G716C", "T728C", "C746T", "A747C", "G771C", "C773T", "T777A", "T782A", "C890T", "C893T", "A977G", "T978G", "A980G", "G989A", "T992G", "G1019A", "T1046G", "A1089G", "T1181C", "T1182C", "C1187T", "G1199A", "A1247C", "G1268A", "A1339G", "G1346A", "G1404A", "G1412A", "T1451A", "A1461G", "G1472A", "C1481T", "A1500G", "T1517C", "A1543G", "A1565G", "C1571G", "T1676C", "G1691A", "C1692A", "A1694G", "A1703G", "C1706T", "T1741A", "A1768C", "C1775A", "C1826A", "C1831T", "A1839G", "C2005A", "A2212G", "A2230G", "T2458C", "T2479A", "G2498A", "T2521C", "A2557G", "C2596T", "T2602A", "A2616G", "T2668C", "G2683A", "G2693A", "A2710G", "C2723T", "T2803A", "G2833A", "C2839A", "T2854A", "G2902A", "C2910G", "A2937G", "G2951A", "G2972A", "G2974A", "G2980A", "A3046G", "T3059A", "T3118C", "A3124G", "T3132A", "T3172A", "G3173A", "A3199G", "C3232T", "A3268G", "T3276A", "A3277G", "A3280G", "A3334T", "G3477A", "T3493G", "C3504T", "T3505A", "G3523A", "T3541A", "G3569A", "A3570C", "G3595A", "G3631A", "G3643A", "C3665G", 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"T9092-", "C9093-", "T9094-", "A9095-", "G9096-", "T9097-", "T9098-", "A9099-", "G9100-", "A9101-", "C9102-", "C9103-", "A9104-", "G9105-", "A9106-", "T9107-", "C9108-", "T9109-", "G9110-", "A9111-", "G9112-", "C9113-", "C9114-", "T9115-", "G9116-"], "INT": ["K7R", "D11E", "T112I", "T124A", "E256D", "I267V"], "RT-p51": ["V135I", "D169E", "K174R", "A200T", "D248E", "P272G", "K281R", "A286T", "V293I", "S322T", "F346Y", "A360T", "V377L", "L394Q", "E413D"], "RT-p66": ["V135I", "D169E", "K174R", "A200T", "D248E", "P272G", "K281R", "A286T", "V293I", "S322T", "F346Y", "A360T", "L394Q", "E413D", "R461K", "T470I", "E492T", "Q524E"], "gp120": ["E4D", "D34N", "V57E", "E59K", "T78A", "T104S", "-106H", "-107G", "-109A", "-111Q", "-112S", "-114N", "-115T", "-116L", "-117G", "-118E", "-123P", "Q142R", "R150K", "-160E", "S162N", "A176T", "V180I", "D202N", "K204T", "N206S", "K212N", "D241E", "K277Q", "T291A", "T292M", "R307G", "T308M", "N312K", "M313T", "K316G", "-319G", "K322R", "H324L", "A328-", "K332N", "G361N", "D365-", "T366-", "N369-", "-379N", "-380S", "-381I", "-382G", "-383N", "D384G", "N432S", "N433G", "K436T", "T437N", "E464K", "V468I", "R472K"], "gp41": ["V2L", "L54M", "V72L", "K106L", "Q108H", "D110Q", "D113G", "M118K", "Q119K", "K122E", "D129S", "R133M", "N140F", "Q147K", "A151E", "N160S", "K172R", "E220G", "T222I", "R231S", "D239G", "V247I", "Y257F", "H258R", "I270T", "W285G", "L288I", "K297R", "T307I", "I319L", "R324T", "A325L", "L330I", "L345Q"], "nef": ["A15Q", "P25T", "D28E", "G29R", "T48F", "E62K", "V85L", "K92R", "V148L"], "p17": ["K18R", "R30K", "V82I", "K91R", "A119E", "N124K", "S125G", "Q127P"], "p2": ["N9K", "-12V"], "p24": ["I6L", "A14P", "S16T", "L83V", "H87Q", "M96I", "S120G", "K203R", "G225S"], "p6": ["P5T", "I21K", "Q30P", "D32E", "*50W", "S51L"], "p7": ["I12V", "K26R"], "pro": ["L10M", "K14R", "H69Q"], "rev": ["D9E", "P31S", "G65D", "L103R", "S106H", "P107T", "A108T"], "tat": ["R7K", "T23N", "Y26F", "F32Y", "V36A", "K40T", "R57K", "S70P", "P77L", "K85E", "P87S"], "vif": ["G37R", "K63E", "I66V", "W70K", "S95H", "Y110H", "H127R", "S130R", "I159R", "K176E", "S186N"], "vpr": ["Q3R", "T49N", "I63T"], "vpu": ["Q2T", "L7S", "A16G", "S24T", "F27L", "L34R", "R35K", "Q36E", "R37K", "K38R", "D40E", "D44N", "R47A", "M67R", "L82Q"]}, "labels": {"aa": "INT: K7R, D11E, T112I, T124A, E256D, I267V; RT-p51: V135I, D169E, K174R, A200T, D248E, P272G, K281R, A286T, V293I, S322T, F346Y, A360T, V377L, L394Q, E413D; RT-p66: V135I, D169E, K174R, A200T, D248E, P272G, K281R, A286T, V293I, S322T, F346Y, A360T, L394Q, E413D, R461K, T470I, E492T, Q524E; gp120: E4D, D34N, V57E, E59K, T78A, T104S, -106H, -107G, -109A, -111Q, -112S, -114N, -115T, -116L, -117G, -118E, -123P, Q142R, R150K, -160E, S162N, A176T, V180I, D202N, K204T, N206S, K212N, D241E, K277Q, T291A, T292M, R307G, T308M, N312K, M313T, K316G, -319G, K322R, H324L, A328-, K332N, G361N, D365-, T366-, N369-, -379N, -380S, -381I, -382G, -383N, D384G, N432S, N433G, K436T, T437N, E464K, V468I, R472K; gp41: V2L, L54M, V72L, K106L, Q108H, D110Q, D113G, M118K, Q119K, K122E, D129S, R133M, N140F, Q147K, A151E, N160S, K172R, E220G, T222I, R231S, D239G, V247I, Y257F, H258R, I270T, W285G, L288I, K297R, T307I, I319L, R324T, A325L, L330I, L345Q; nef: A15Q, P25T, D28E, G29R, T48F, E62K, V85L, K92R, V148L; p17: K18R, R30K, V82I, K91R, A119E, N124K, S125G, Q127P; p2: N9K, -12V; p24: I6L, A14P, S16T, L83V, H87Q, M96I, S120G, K203R, G225S; p6: P5T, I21K, Q30P, D32E, *50W, S51L; p7: I12V, K26R; pro: L10M, K14R, H69Q; rev: D9E, P31S, G65D, L103R, S106H, P107T, A108T; tat: R7K, T23N, Y26F, F32Y, V36A, K40T, R57K, S70P, P77L, K85E, P87S; vif: G37R, K63E, I66V, W70K, S95H, Y110H, H127R, S130R, I159R, K176E, S186N; vpr: Q3R, T49N, I63T; vpu: Q2T, L7S, A16G, S24T, F27L, L34R, R35K, Q36E, R37K, K38R, D40E, D44N, R47A, M67R, L82Q"}}}]}, {"name": "CRF72_BF1_NODE_0000002", "node_attrs": {"div": 0.1014, "clade_membership": {"value": "CRF72_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T1148C", "C1571A", "G1588A", "C1903T", "T1954G", "C2005T", "A2182G", "T2449A", "T2824A", "T3132C", "A3953G", "A4000G", "A4189G", "A4246G", "A4694G", "T5616G", "C5797T", "T5798A", "-5800A", "-5801T", "-5803G", "-5804A", "-5805A", "-5806A", "-5807T", "-5808G", "-5809G", "-5810G", "T5828A", "-6211G", "-6212A", "G6220T", "C6256T", "C6487T", "G6611A", "C6632T", "G6819A", "A6820G", "-6834A", "-6977G", "-6986A", "-6988T", "-6993C", "G7054A", "G7183A", "G7390A", "G7453A", "A7676G", "T7690A"], "INT": ["I60V"], "RT-p51": ["P272A", "F346S"], "RT-p66": ["P272A", "F346S", "L377V"], "gp120": ["N105-", "N108-", "A125T", "N157D", "A253T", "L260F", "-319K", "G361K", "-378N", "-380T"], "gp41": ["M4I", "S125G"], "p7": ["R41K"], "vif": ["I31T"], "vpu": ["L64Y"]}, "labels": {"aa": "INT: I60V; RT-p51: P272A, F346S; RT-p66: P272A, F346S, L377V; gp120: N105-, N108-, A125T, N157D, A253T, L260F, -319K, G361K, -378N, -380T; gp41: M4I, S125G; p7: R41K; vif: I31T; vpu: L64Y"}}, "children": [{"name": "KJ671535", "node_attrs": {"div": 0.138, "accession": "KJ671535", "clade_membership": {"value": "CRF72_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_MG004"}, "LANL_subtype": {"value": "CRF72_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T45C", "A50G", "A66-", "A67-", "T154C", "C161T", "G167A", "G407A", "A410G", "A455G", "C456T", "G508A", "A562G", "G579A", "A599G", "A686G", "G716A", "C749G", "A815G", "G818A", "G821A", "G822T", "A833C", "T852G", "A932G", "T988C", "T992G", "T1013A", "G1019A", "T1040C", "A1089G", "T1100C", "C1105A", "G1192A", "A1205G", "G1313A", "A1329T", "T1344A", "A1359T", "T1403C", "G1419A", "A1449C", "A1474G", "A1475G", "C1556A", "T1559C", "A1562G", "A1567G", "A1619T", "G1640A", "C1670T", "G1673A", "T1676C", "C1714A", "T1722C", "A1765G", "A1770G", "A1771G", "G1773A", "C1826T", "A1968G", "G2074A", "C2098T", "C2105T", "A2154G", "G2155A", "A2212G", "G2224A", "A2311G", "A2380G", "G2392A", "A2419G", "T2425C", "T2458C", "T2464C", "C2467T", "C2575T", "T2597C", "T2602G", "T2659C", "T2737G", "G2837A", "C2839T", "C2845A", "A2846T", "G2914A", "T3049C", "C3067T", "G3127T", "A3130G", "A3205G", "G3307A", "G3431T", "A3449T", "A3450T", "G3477A", "C3492T", "T3545A", "A3571G", "A3607C", "A3674C", "T3695A", "G3755A", "A3770G", "G3866A", "A3877G", "C3892A", "G3907A", "A4057G", "A4107C", "G4174A", "C4195T", "A4243G", "A4303G", "A4376G", "A4424G", "G4495A", "A4531G", "A4535C", "C4543G", "T4678C", "C4690T", "G4735A", "G4835T", "A4869C", "G4870A", "C4871T", "T4976A", "A4988G", "G5024A", "A5033C", "C5034T", "C5038T", "G5040A", "A5046C", "T5062G", "A5119G", "G5131A", "A5137G", "A5159G", "T5170C", "A5173G", "G5179A", "T5197C", "G5212A", "T5214C", "C5227T", "T5228C", "A5248G", "G5257A", "A5277T", "A5285T", "C5306T", "A5335G", "T5354C", "G5437C", "A5446C", "C5451T", "A5462G", "G5463A", "T5475C", "A5480T", "C5490T", "T5492C", "A5545C", "A5547C", "G5557C", "G5565A", "C5569A", "T5577G", "T5584C", "G5599A", "C5602T", "A5607G", "C5612A", "T5617C", "T5620G", "A5621C", "T5626G", "A5628G", "T5654G", "A5710G", "A5734C", "A5790G", "C5827T", "A5861-", "C5862-", "A5863-", "A5866C", "A5869C", "T5932C", "T5951C", "T6024A", "G6028A", "G6029A", "A6031G", "A6095G", "T6134C", "T6160C", "C6165G", "A6167-", "A6168-", "T6169-", "-6180C", "A6185G", "A6186C", "A6191C", "A6192C", "A6194C", "T6196A", "C6198A", "-6201G", "G6203A", "-6205C", "-6207T", "-6213G", "-6214G", "G6224A", "A6254G", "C6278T", "A6279T", "C6287T", "C6293A", "T6294C", "T6298C", "G6303A", "A6326G", "T6328A", "A6330G", "A6332G", "C6347T", "T6358C", "G6466A", "A6565G", "G6575A", "A6576G", "T6641C", "-6688T", "-6689A", "-6690T", "-6691A", "-6692C", "-6693A", "A6695T", "C6758T", "G6771A", "A6786C", "T6787A", "A6788C", "A6790C", "A6796G", "A6797G", "A6806G", "A6807G", "-6809A", "A6812G", "C6822A", "-6830C", "-6831C", "-6832C", "-6833A", "T6835C", "A6836G", "A6837C", "T6838A", "C6843T", "T6846A", "A6848-", "A6849-", "A6850-", "A6854G", "T6888C", "A6913G", "C6919T", "A6945C", "-6947G", "-6948G", "-6949C", "-6950A", "-6952A", "-6953G", "-6954T", "-6955G", "-6956G", "-6957T", "-6958C", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964C", "-6965A", "-6966C", "-6967T", "-6968C", "-6969T", "-6970C", "-6971A", "-6972C", "-6973T", "-6974A", "-6975A", "-6976T", "-6984C", "-6985C", "-6987C", "G6989A", "-6990T", "-6994T", "-7001A", "-7002A", "A7005G", "A7021C", "C7084T", "A7085G", "A7095G", "C7101A", "G7107C", "T7123G", "T7144G", "T7150G", "C7164A", "C7201T", "A7234G", "A7276G", "A7279G", "A7299G", "C7393T", "A7398T", "C7553A", "A7620G", "C7625G", "A7629C", "G7642A", "G7660A", "A7669G", "A7687T", "A7689C", "A7692T", "G7753A", "T7801C", "A7818G", "A7847G", "G7862A", "C7993G", "A8007G", "C8010G", "A8029G", "C8047T", "G8070C", "G8098A", "A8104G", "T8156G", "C8167T", "G8201T", "C8202T", "G8204A", "G8255A", "T8277G", "C8294A", "C8336G", "A8341G", "G8404A", "C8406A", "A8408G", "T8426C", "A8484-", "C8485-", "-8490T", "C8491T", "T8505C", "C8543A", "A8643G", "C8666T", "C8676T", "C8684T", "A8701T", "G8798T", "T8829A", "C8831T", "T8832C", "C8869T", "A8870G", "G8875A", "G8885A", "G8888A", "C8916G", "T8918G", "T8923A", "G8968-", "A8969-", "G8970-", "T8972-", "T8973-", "T8974-", "C8975-", "G8982A", "G8983A", "A8984-", "C8985-", "T8986-", "T8987-", "T8988-", "C8989-", "C8990-", "G8991-", "G8995C", "G8996T", "T9000A"], "INT": ["V31I", "S39R", "K111T", "I201V", "I217V", "N254H"], "RT-p51": ["P4S", "K20R", "D169E", "F214L", "D248N", "D250E", "S251C", "E344D"], "RT-p66": ["P4S", "K20R", "D169E", "F214L", "D248N", "D250E", "S251C", "E344D", "A446S", "K452L", "R461K", "A466V", "L484I", "K527Q", "S534T", "A554T", "I559V"], "gp120": ["T3D", "E4N", "K5-", "Y33H", "V57E", "E59K", "I81V", "T104-", "E122-", "G124-", "T125-", "T134A", "Q142L", "H145Y", "L147T", "R150K", "N159-", "N161-", "D241S", "S263P", "I281L", "D294A", "H302Y", "S306N", "R307G", "N311T", "N312H", "K318G", "K320E", "S323Y", "T330-", "N334D", "M345T", "K361R", "N364T", "D365G", "-367V", "-368V", "-370G", "-371T", "-372L", "-373T", "-379A", "-381I", "-382T", "-383N", "D384G", "I411V", "N414S", "T416N", "N418T", "N432K", "N433D", "T437N", "K482R"], "gp41": ["V24M", "Q32L", "L84I", "K106R", "Q108E", "D109A", "D113E", "D129T", "E130V", "K172R", "I182V", "V187I", "D230E", "E235G", "S256T", "H258R", "I281V", "W285G", "A300F", "V301I", "V318I", "A325G", "H331N", "L345V"], "nef": ["R21K", "T48F", "C55R", "E63D", "V85L", "I101V", "Y120F", "E152D", "C163S", "Q170L", "E176L", "R178K", "M182I", "H192E", "V194K", "D205N"], "p17": ["R58K", "K76R", "V82I"], "p2": ["N9H"], "p24": ["I6M", "A31S", "S41A", "V86A", "H87Q", "M96I", "S120G", "P125Q", "R154K", "T200S", "L205M", "T210S", "V230I"], "p6": ["A12E", "F15L", "E29G", "K31G", "D32N", "*50W"], "p7": ["K3R", "S4G", "K34R"], "pro": ["K57R"], "rev": ["E10D", "N11T", "K14N", "R17K", "L21R", "Q49E", "T54K", "N61D", "P67S", "Q74H", "D84N", "N86D", "L103R", "P107S"], "tat": ["A21P", "N24P", "K29R", "Q35L", "I39T", "R57H", "D61H", "H65N", "S70P"], "vif": ["A35V", "R50K", "Q83H", "S95H", "S130R", "A151V", "A152T", "I154L", "I159R", "Q178R", "G182D", "K184R"], "vpr": ["T19A", "V37A", "I61L", "Q77R"], "vpu": ["Y5A", "L7V", "A16G", "R35G", "I43L", "V65M", "-74Y"]}, "labels": {"aa": "INT: V31I, S39R, K111T, I201V, I217V, N254H; RT-p51: P4S, K20R, D169E, F214L, D248N, D250E, S251C, E344D; RT-p66: P4S, K20R, D169E, F214L, D248N, D250E, S251C, E344D, A446S, K452L, R461K, A466V, L484I, K527Q, S534T, A554T, I559V; gp120: T3D, E4N, K5-, Y33H, V57E, E59K, I81V, T104-, E122-, G124-, T125-, T134A, Q142L, H145Y, L147T, R150K, N159-, N161-, D241S, S263P, I281L, D294A, H302Y, S306N, R307G, N311T, N312H, K318G, K320E, S323Y, T330-, N334D, M345T, K361R, N364T, D365G, -367V, -368V, -370G, -371T, -372L, -373T, -379A, -381I, -382T, -383N, D384G, I411V, N414S, T416N, N418T, N432K, N433D, T437N, K482R; gp41: V24M, Q32L, L84I, K106R, Q108E, D109A, D113E, D129T, E130V, K172R, I182V, V187I, D230E, E235G, S256T, H258R, I281V, W285G, A300F, V301I, V318I, A325G, H331N, L345V; nef: R21K, T48F, C55R, E63D, V85L, I101V, Y120F, E152D, C163S, Q170L, E176L, R178K, M182I, H192E, V194K, D205N; p17: R58K, K76R, V82I; p2: N9H; p24: I6M, A31S, S41A, V86A, H87Q, M96I, S120G, P125Q, R154K, T200S, L205M, T210S, V230I; p6: A12E, F15L, E29G, K31G, D32N, *50W; p7: K3R, S4G, K34R; pro: K57R; rev: E10D, N11T, K14N, R17K, L21R, Q49E, T54K, N61D, P67S, Q74H, D84N, N86D, L103R, P107S; tat: A21P, N24P, K29R, Q35L, I39T, R57H, D61H, H65N, S70P; vif: A35V, R50K, Q83H, S95H, S130R, A151V, A152T, I154L, I159R, Q178R, G182D, K184R; vpr: T19A, V37A, I61L, Q77R; vpu: Y5A, L7V, A16G, R35G, I43L, V65M, -74Y"}}}, {"name": "CRF72_BF1_NODE_0000003", "node_attrs": {"div": 0.10977, "clade_membership": {"value": "CRF72_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G471A", "T534A", "C537A", "A638G", "A704G", "G740A", "A1101G", "C1136T", "A1142G", "C1292A", "C1350A", "T1501C", "C1613T", "G1736A", "G1760A", "A1870G", "T2101C", "G2173A", "A2317G", "C2452A", "G2612A", "G2707A", "A2767G", "C2839A", "A2986G", "G3058A", "G3094A", "A3450G", "G3569A", "C3610T", "T3742C", "G3766A", "A3769G", "G3859A", "A3985G", "C4771A", "A4773G", "T4840C", "G4856A", "T4952G", "A5085G", "G5143A", "T5203C", "T5237C", "C5444A", "A5453T", "G5629A", "C5827A", "-6174A", "C6181-", "A6194G", "A6235G", "T6310C", "T6445C", "G6478A", "C6563T", "A6589C", "C6766T", "G6773A", "A6776G", "C6777A", "A6781G", "T6821C", "T6829C", "A6839G", "A6840C", "T6895C", "G6936A", "-6978A", "-6979A", "-6982C", "-6983A", "-6985T", "-6987A", "-6994A", "A7090G", "G7846A", "C7939T", "A7998G", "A8009C", "G8276A", "G8323C", "T8369C", "C8491-", "G8588A", "G8590C", "T8595G"], "INT": ["E256D"], "RT-p51": ["A173T", "D248E"], "RT-p66": ["A173T", "D248E", "K452R", "E492K"], "gp120": ["R245S", "H280-", "D294E", "T308E", "S323P", "N418R", "K436N"], "gp41": ["D129K", "D232G", "R236P", "A325I", "L340F"], "p17": ["V46I", "S67T"], "p24": ["I124V", "D187E", "P207T"], "p6": ["E19-", "I21K", "P23T", "S24P", "-26P"], "rev": ["P31S"], "tat": ["T23N", "Y26F", "R57K", "P77L"], "vif": ["A62E", "V85A", "N122K", "T167A", "S186N"], "vpr": ["Y45H"], "vpu": ["Q2P", "A8T"]}, "labels": {"aa": "INT: E256D; RT-p51: A173T, D248E; RT-p66: A173T, D248E, K452R, E492K; gp120: R245S, H280-, D294E, T308E, S323P, N418R, K436N; gp41: D129K, D232G, R236P, A325I, L340F; p17: V46I, S67T; p24: I124V, D187E, P207T; p6: E19-, I21K, P23T, S24P, -26P; rev: P31S; tat: T23N, Y26F, R57K, P77L; vif: A62E, V85A, N122K, T167A, S186N; vpr: Y45H; vpu: Q2P, A8T"}}, "children": [{"name": "FJ904244", "node_attrs": {"div": 0.14545000000000002, "accession": "FJ904244", "clade_membership": {"value": "CRF72_BF1"}, "country": {"value": "IT"}, "date": {"value": 2008.0}, "Strain_name": {"value": "IT_BF_PRIN_454"}, "LANL_subtype": {"value": "CRF72_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "A399C", "T426C", "A435G", "A485C", "G519A", "G520C", "C531T", "C540A", "T571A", "G579A", "G608A", "T614G", "A617C", "T636C", "G641T", "A666T", "C749A", "T852A", "T917C", "T992G", "C1004T", "G1022A", "T1040C", "T1046G", "T1064A", "A1089G", "A1134G", "G1151A", "A1193G", "A1205G", "A1208G", "A1263T", "A1271G", "A1359T", "G1419A", "G1424A", "A1442G", "A1450C", "A1492C", "A1525G", "A1529G", "C1541A", "A1586G", "A1602T", "G1604A", "T1676C", "C1679T", "G1709T", "C1714A", "A1715G", "G1725A", "G1737C", "T1741C", "T1752C", "C1775G", "C1825A", "C1826G", "G1828A", "A1835G", "C1865T", "A1867G", "G1954A", "A1968G", "A2154G", "A2210T", "A2311G", "G2332A", "A2371G", "G2392A", "A2459G", "T2464G", "G2470A", "G2498A", "T2499C", "T2506C", "A2519G", "T2602C", "T2654C", "A2716G", "A2734G", "A2752G", "C2770T", "C2823A", "C2848T", "T2944C", "G2951A", "C2975A", "G2980A", "G2984C", "G3016A", "G3017C", "G3019A", "A3064G", "C3067T", "A3115G", "C3132A", "T3170A", "G3188A", "G3221T", "G3259A", "A3364T", "G3442T", "G3490A", "T3497C", "C3499A", "T3545A", "A3666T", "A3676C", "A3683C", "T3793C", "A3854G", "A3855G", "C3857A", "C3863G", "A3900G", "T4085C", "A4112G", "A4130C", "G4131C", "T4135C", "C4140T", "A4145G", "T4147C", "T4153C", "G4263A", "A4303G", "A4376G", "A4552G", "A4561G", "G4673A", "A4677G", "T4718C", "A4725C", "A4771G", "A4887G", "C4911G", "T4991C", "A5005G", "G5049A", "A5057G", "C5069T", "A5113G", "A5119G", "A5155G", "T5170C", "G5213C", "T5214C", "G5257A", "T5293C", "A5335G", "T5354C", "G5370C", "A5397G", "A5432G", "C5447A", "T5492C", "C5611T", "C5615A", "G5635A", "A5643C", "G5644A", "T5654C", "T5687A", "G5699A", "A5715G", "A5728T", "T5731C", "A5790G", "A5800G", "A5827G", "A5840T", "C5862A", "A5869T", "T5870C", "G5872A", "A6009G", "A6031G", "G6121A", "-6170G", "-6171C", "-6172C", "-6173A", "-6175T", "A6177T", "G6179-", "A6185T", "A6188G", "A6195C", "T6196A", "A6200-", "-6205G", "A6206G", "-6207A", "C6208A", "C6209A", "T6210C", "-6213T", "-6214A", "G6215C", "T6220A", "C6221A", "C6222A", "A6223G", "G6224C", "G6225C", "G6226A", "C6228G", "A6229G", "C6278A", "A6323G", "G6329A", "T6331A", "A6333T", "T6361C", "G6451A", "A6464G", "G6572A", "G6575A", "A6578G", "C6618A", "G6638A", "T6641C", "A6668G", "A6669G", "-6688T", "-6689A", "-6690T", "-6691A", "-6692T", "-6693C", "T6694A", "C6713A", "C6745T", "A6777G", "A6786T", "T6787A", "A6788G", "A6797G", "A6800G", "A6806G", "A6807G", "-6809A", "-6833C", "C6856T", "C6874T", "A6880G", "A6926G", "A6934T", "T6946A", "C6951-", "-6953G", "-6954T", "-6955G", "-6956T", "-6957T", "-6958T", "-6959A", "-6960A", "-6961T", "-6962G", "-6963A", "-6964C", "-6965A", "-6966C", "-6967C", "-6968A", "-6969A", "-6970T", "-6971G", "-6972G", "-6973C", "-6974A", "-6975C", "-6976A", "G6977A", "-6980G", "-6981C", "-6984A", "-6990A", "T7003-", "A7007C", "C7014T", "C7078T", "G7079A", "C7080A", "C7089A", "T7099C", "C7127A", "G7151C", "A7160G", "G7168A", "A7279G", "G7307A", "A7313C", "A7373G", "T7403C", "G7508A", "A7590C", "T7622C", "A7626T", "T7630G", "G7640C", "A7655T", "G7657A", "A7668G", "G7677A", "T7685A", "A7688C", "G7701A", "G7712A", "A7713T", "G7714A", "A7733C", "A7747G", "G7753A", "G7773A", "T7796A", "G7883A", "T7906C", "A7912C", "A7929T", "C7931A", "A7962G", "C7969A", "C7993G", "G8055A", "G8076A", "A8105G", "C8106T", "G8144A", "G8157T", "G8255A", "G8274T", "T8281A", "C8323T", "A8338T", "A8340G", "T8375A", "C8382T", "G8385A", "T8387A", "G8398A", "A8408C", "T8426G", "G8454A", "-8486T", "-8487G", "-8488A", "-8489A", "T8492-", "A8493-", "A8494-", "C8495-", "A8496C", "T8558C", "A8654G", "C8661A", "A8662G", "T8672G", "T8675C", "G8682A", "C8711T"], "INT": ["N27G", "L28I", "P30A", "K42R", "I113V", "S119P", "T122I", "T124A", "G163E", "I201V"], "RT-p51": ["K20R", "M39L", "K122E", "D123E", "V135T", "I142V", "P243Q", "A286T", "P294T", "A297P", "E308Q", "S346Y", "S359T", "V365I", "A376S"], "RT-p66": ["K20R", "M39L", "K122E", "D123E", "V135T", "I142V", "P243Q", "A286T", "P294T", "A297P", "E308Q", "S346Y", "S359T", "V365I", "A376S", "E449D", "S468P", "L484I", "Q524L", "K527N", "K530Q"], "gp120": ["T3K", "K5N", "N52S", "-111N", "-112A", "-113N", "-121Q", "-123K", "I126V", "Q142K", "N159K", "-160I", "K204E", "E240K", "D241N", "I242V", "T255N", "E262K", "S263P", "N272G", "-280S", "E308G", "N311I", "N312E", "K316E", "K318G", "P326H", "K329-", "N358D", "N364K", "D365V", "T366-", "-368F", "-370D", "-371T", "-372N", "-373G", "-374T", "-375K", "-376A", "-377N", "-379D", "T385P", "T387I", "A409N", "A412E", "L425I", "N433H", "N436D", "T437S"], "gp41": ["V2M", "I4L", "V69I", "N96T", "S107P", "Q108L", "D109E", "D113Q", "M118L", "K122R", "G125D", "S128T", "K129Q", "R133K", "E137I", "K144Q", "S157N", "S165T", "V194I", "H209L", "H210N", "E220G", "D230E", "S251N", "T268V", "W285L", "V318I", "R324I"], "nef": ["P14S", "A15T", "R19K", "D28E", "E38K", "N49E", "-50H", "N52-", "E63D", "G83A", "Q107R", "V114I"], "p17": ["I34V", "G62T", "P66S", "L68I", "Q69K", "F79Y", "V82I", "D93E", "E102D", "S111C", "S125G", "S126N"], "p2": ["N9T"], "p24": ["S41T", "H87Q", "S120G", "I135V", "T178S", "T210S", "V230I"], "p6": ["A12E", "G16R", "K21Q", "D32E", "P49Q"], "p7": ["S4G", "Q9P", "I12T", "K20R", "M46L"], "pro": ["L10V", "I13V", "K57R"], "rev": ["P28Q", "Q49E", "N86S", "S99N"], "tat": ["K19R", "I39T", "T74S", "K85E", "P87Q"], "vif": ["M29I", "T31V", "T47P", "E62G", "K63E", "N101D", "L109V", "N140S", "A155T", "K176R", "Q178R", "N190S"], "vpr": ["V37P", "Q77R", "A89P"], "vpu": ["P2S", "P3Q", "V10I", "L12F", "V13I", "F27Y", "R31K", "R41W", "-74D", "D78V"]}, "labels": {"aa": "INT: N27G, L28I, P30A, K42R, I113V, S119P, T122I, T124A, G163E, I201V; RT-p51: K20R, M39L, K122E, D123E, V135T, I142V, P243Q, A286T, P294T, A297P, E308Q, S346Y, S359T, V365I, A376S; RT-p66: K20R, M39L, K122E, D123E, V135T, I142V, P243Q, A286T, P294T, A297P, E308Q, S346Y, S359T, V365I, A376S, E449D, S468P, L484I, Q524L, K527N, K530Q; gp120: T3K, K5N, N52S, -111N, -112A, -113N, -121Q, -123K, I126V, Q142K, N159K, -160I, K204E, E240K, D241N, I242V, T255N, E262K, S263P, N272G, -280S, E308G, N311I, N312E, K316E, K318G, P326H, K329-, N358D, N364K, D365V, T366-, -368F, -370D, -371T, -372N, -373G, -374T, -375K, -376A, -377N, -379D, T385P, T387I, A409N, A412E, L425I, N433H, N436D, T437S; gp41: V2M, I4L, V69I, N96T, S107P, Q108L, D109E, D113Q, M118L, K122R, G125D, S128T, K129Q, R133K, E137I, K144Q, S157N, S165T, V194I, H209L, H210N, E220G, D230E, S251N, T268V, W285L, V318I, R324I; nef: P14S, A15T, R19K, D28E, E38K, N49E, -50H, N52-, E63D, G83A, Q107R, V114I; p17: I34V, G62T, P66S, L68I, Q69K, F79Y, V82I, D93E, E102D, S111C, S125G, S126N; p2: N9T; p24: S41T, H87Q, S120G, I135V, T178S, T210S, V230I; p6: A12E, G16R, K21Q, D32E, P49Q; p7: S4G, Q9P, I12T, K20R, M46L; pro: L10V, I13V, K57R; rev: P28Q, Q49E, N86S, S99N; tat: K19R, I39T, T74S, K85E, P87Q; vif: M29I, T31V, T47P, E62G, K63E, N101D, L109V, N140S, A155T, K176R, Q178R, N190S; vpr: V37P, Q77R, A89P; vpu: P2S, P3Q, V10I, L12F, V13I, F27Y, R31K, R41W, -74D, D78V"}}}, {"name": "KJ671536", "node_attrs": {"div": 0.13948, "accession": "KJ671536", "clade_membership": {"value": "CRF72_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_MG008"}, "LANL_subtype": {"value": "CRF72_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A214-", "G215A", "G224A", "G265A", "A353G", "A388G", "A455G", "A458G", "C503T", "C525T", "T539G", "A551G", "C681-", "A682-", "G683-", "C684-", "A685-", "A686-", "G687-", "C688-", "A689-", "G702A", "C713T", "A725G", "G743A", "C749T", "G755A", "G821A", "C830T", "C890T", "A1074G", "A1124G", "C1137T", "G1173A", "T1174C", "G1192A", "A1196G", "G1256A", "G1346A", "C1444T", "G1455A", "G1472A", "A1475G", "G1476A", "A1500G", "A1529T", "C1535T", "A1543G", "C1615A", "A1642G", "G1673A", "A1687G", "G1709A", "A1733-", "G1734-", "A1735-", "T1741A", "A1742G", "C1745A", "-1746A", "-1747C", "-1748C", "A1759G", "T1796C", "A1832G", "G1841A", "C1960T", "A1982G", "C2083T", "T2211C", "G2224A", "C2296T", "A2380G", "A2419G", "C2500T", "A2560G", "A2572C", "T2659C", "T2708C", "G2714A", "A2715G", "A2716T", "A2755G", "G2876A", "G2902A", "G2926A", "G2984A", "C2985A", "T3045C", "A3080C", "A3103G", "A3124G", "C3175T", "A3214G", "G3224A", "T3225C", "T3276A", "A3292T", "G3398A", "G3431T", "A3454G", "T3497A", "G3508A", "T3526G", "G3643A", "G3685A", "G3718A", "A3825G", "G3846A", "T3865G", "G3866A", "G3884A", "A3973C", "G3989A", "A4021G", "G4237A", "A4264G", "G4294A", "C4428T", "T4585C", "C4674T", "T4678C", "G4695A", "G4696A", "G4735A", "C4757T", "A4774T", "A4782G", "A4804T", "A4858G", "G4861A", "C4871A", "T4886A", "C4889T", "C4898T", "A4937C", "C4955A", "T4969G", "A4988C", "G5024A", "C5034T", "A5048T", "T5072C", "A5150C", "C5162T", "G5176A", "A5187G", "T5197C", "G5212A", "C5221T", "C5242T", "G5267A", "T5333C", "G5363A", "A5397C", "A5461C", "A5462G", "T5472A", "T5487C", "T5577G", "A5601G", "C5614T", "G5616C", "A5631G", "A5632G", "G5653A", "G5673A", "G5717A", "A5718G", "G5730A", "A5743C", "T5772C", "C5824T", "G5839A", "G6023A", "T6024A", "A6092G", "-6170T", "-6175C", "-6180C", "-6181A", "T6184C", "A6191C", "A6192T", "T6193G", "C6199A", "-6201A", "G6203A", "-6205C", "-6207C", "-6213A", "-6214T", "C6222T", "G6227A", "C6233A", "A6261C", "G6263A", "A6283G", "T6289G", "A6324G", "T6325C", "T6331C", "A6333G", "A6335G", "A6336G", "C6446T", "A6489G", "A6520G", "A6573G", "T6577G", "T6602A", "G6644A", "-6697A", "-6698C", "-6699A", "-6700A", "-6701T", "-6702T", "A6703G", "A6753G", "A6786G", "A6790C", "A6798G", "-6809G", "C6824T", "-6830C", "-6831A", "-6832G", "-6833A", "A6848C", "A6935C", "-6947G", "-6948A", "-6949C", "-6950A", "-6952A", "-6980A", "-6981A", "-6984G", "-6990G", "-6995A", "-6996A", "-6997C", "-6998G", "-6999C", "-7000C", "-7001A", "-7002C", "C7025A", "G7026A", "A7027G", "G7040A", "A7046T", "A7063G", "T7144G", "A7152G", "G7162T", "T7170C", "C7264T", "G7269A", "T7322C", "A7373C", "C7463A", "A7590G", "A7641G", "T7801A", "T7888A", "C7926T", "A7953G", "A8011G", "T8012C", "G8018A", "A8079G", "A8152G", "G8170A", "C8221T", "A8241G", "A8288C", "C8294A", "G8329A", "C8336G", "A8341G", "G8373A", "A8388G", "C8406A", "G8407A", "A8458G", "C8480T", "A8516G", "T8531G", "A8537G", "G8554A", "G8589T"], "INT": ["N17S", "S24N", "V31I", "V37I", "V72I", "M154I", "T218I"], "RT-p51": ["M39T", "E207S", "V261I", "A297K", "V317A", "I329L", "V377T", "L394Q", "E399D", "A435T"], "RT-p66": ["M39T", "E207S", "V261I", "A297K", "V317A", "I329L", "V377T", "L394Q", "E399D", "A435T", "A446S", "S468T"], "gp120": ["V57K", "I80V", "-105D", "-106L", "E122-", "Q127K", "E136A", "V137I", "H145Q", "D157S", "N159D", "-160S", "N161D", "K212R", "E240G", "D241E", "S250T", "V264I", "I281-", "-282Q", "-283L", "K300R", "N311S", "E315R", "K319E", "H324Y", "P326Q", "A328N", "K329A", "K332Q", "K361Q", "N369-", "-375E", "-376N", "-377S", "-379G", "-381N", "-382A", "-383T", "R391K", "V396I", "M398L", "N433G", "I439T", "R472K"], "gp41": ["V24L", "L54M", "N96S", "D113G", "N166K", "N195K", "T208I", "D217G", "D239N", "H258R", "H259R", "I281V", "E313G", "I329L", "H331N", "L345V"], "nef": ["V11I", "I16V", "R22K", "K39R", "R71K", "G83S"], "p1": ["K4R"], "p17": ["K18R", "L68M", "Q116-", "Q117-", "A118-", "G123R"], "p2": ["A7V", "A11-", "-12T"], "p24": ["I115V", "V148T", "R154K"], "p6": ["N3S", "P25S", "K27R", "*50W"], "p7": ["I12A", "E21D", "K26R", "T50N"], "pro": ["T12A", "V15I", "I62V"], "rev": ["L21R", "I55A", "G57E", "I102V", "A108T"], "tat": ["R7S", "N24T", "K29R", "F32L", "P73S", "T82A"], "vif": ["H30Y", "G37K", "R50K", "K63V", "I66V", "H73L", "K91R", "R92K", "S95R", "E117D", "I128R", "E134D"], "vpr": ["N16H", "N28S", "A55T"], "vpu": ["P3S", "I9V", "A16I", "R37K", "I46L", "V65M", "-69Y", "-70N", "H73-", "D78N"]}, "labels": {"aa": "INT: N17S, S24N, V31I, V37I, V72I, M154I, T218I; RT-p51: M39T, E207S, V261I, A297K, V317A, I329L, V377T, L394Q, E399D, A435T; RT-p66: M39T, E207S, V261I, A297K, V317A, I329L, V377T, L394Q, E399D, A435T, A446S, S468T; gp120: V57K, I80V, -105D, -106L, E122-, Q127K, E136A, V137I, H145Q, D157S, N159D, -160S, N161D, K212R, E240G, D241E, S250T, V264I, I281-, -282Q, -283L, K300R, N311S, E315R, K319E, H324Y, P326Q, A328N, K329A, K332Q, K361Q, N369-, -375E, -376N, -377S, -379G, -381N, -382A, -383T, R391K, V396I, M398L, N433G, I439T, R472K; gp41: V24L, L54M, N96S, D113G, N166K, N195K, T208I, D217G, D239N, H258R, H259R, I281V, E313G, I329L, H331N, L345V; nef: V11I, I16V, R22K, K39R, R71K, G83S; p1: K4R; p17: K18R, L68M, Q116-, Q117-, A118-, G123R; p2: A7V, A11-, -12T; p24: I115V, V148T, R154K; p6: N3S, P25S, K27R, *50W; p7: I12A, E21D, K26R, T50N; pro: T12A, V15I, I62V; rev: L21R, I55A, G57E, I102V, A108T; tat: R7S, N24T, K29R, F32L, P73S, T82A; vif: H30Y, G37K, R50K, K63V, I66V, H73L, K91R, R92K, S95R, E117D, I128R, E134D; vpr: N16H, N28S, A55T; vpu: P3S, I9V, A16I, R37K, I46L, V65M, -69Y, -70N, H73-, D78N"}}}]}]}]}, {"name": "results/subtype_trees/CRF66_BF1.nwk", "node_attrs": {"div": 0.10112, "clade_membership": {"value": "CRF66_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C160T", "T377A", "G407A", "C482T", "T495G", "A507C", "C510A", "C583T", "G595T", "A619G", "A620T", "A645C", "G656A", "A669C", "A672C", "G678C", "C700A", "A705-", "A706-", "C707-", "A708-", "C710-", "G712-", "A715-", "C722T", "G770A", "A869G", "A887G", "C902T", "G1424A", "A1492C", "G1673A", "C1775A", "T1986C", "A2026G", "A2038G", "T2080G", "C2083T", "C2098A", "A2131G", "G2155A", "T3059A", "C3322T", "C3499T", "A3601C", "A3608G", "G3766A", "A3787G", "A3805G", "A4076C", "A4084G", "G4150A", "G4237A", "G4354A", "A4407G", "C4471T", "G4475C", "A4498T", "C4525A", "A4642G", "C4643A", "A4652C", "T4665C", "C4674T", "T4678G", "T4679G", "A4683G", "A4684G", "C4691T", "C4820T", "C4902T", "A4951G", "A5049C", "G5087A", "A5159G", "T5197G", "G5225A", "T5354C", "A5385C", "A5421G", "A5432G", "T5487C", "C5548G", "C5563G", "C5567A", "C5569A", "C5612A", "T5620G", "T5627C", "T5686C", "G5781A", "T5828A", "A5842G", "C5958A", "G6037A", "A6044C", "C6052T", "A6195G", "-6211C", "-6212C", "-6213T", "-6214G", "-6217A", "C6278A", "A6279T", "T6289C", "C6322T", "A6324G", "C6340T", "A6376C", "G6478A", "T6545C", "C6745T", "G6767A", "A6776G", "C6777A", "A6788G", "A6790C", "C6824T", "A6937G", "-6948A", "-6949C", "-6950A", "C7016A", "A7152C", "C7171T", "T7411A", "A7492G", "C7690G", "G7717A", "G7753A", "T7852C", "C7898A", "A7912T", "G7937A", "C7938G", "G7947A", "A7977G", "A7988C", "G7989A", "A7992G", "T8020C", "A8032T", "A8036T", "A8104G", "C8106T", "G8107A", "A8118G", "G8130A", "G8170A", "A8227C", "T8232C", "A8248T", "G8255A", "C8265T", "T8266A", "G8269A", "C8294-", "G8304-", "G8373-", "A8409G", "C8411T", "C8413A", "T8414A", "T8440C", "A8494C", "C8543T", "G8882A", "A8909G", "T8913C", "T8915G", "C8916A", "A8917G", "T8918A", "C8928A", "C8934A", "T8935A", "G8936A", "A8947T", "A8952C", "C8967A", "-8971A", "T8974G", "G9007A", "A9009-", "T9014-", "T9019A", "G9026A", "G9040T", "A9041C", "G9042A", "T9075C"], "INT": ["I101L", "M154I", "K211R", "V234L", "E256D"], "RT-p51": ["A173T", "S322T"], "RT-p66": ["A173T", "S322T", "I505V"], "gp120": ["T35K", "Q142M", "N157S", "V305I", "T308E", "N311Y", "H324Y", "L388I", "N433T"], "gp41": ["D129E", "A212S", "G215E", "E225G", "R229Q", "D230G", "I245F", "A268I", "V310A", "V318I", "A321V"], "nef": ["T23A", "P24E", "V33A", "H192R", "V194I", "L198K", "Y202F", "K204Q"], "p17": ["D14E", "S54A", "Q59K", "A83V", "C87F", "Q90R", "K95S", "I104L", "K112Q", "K113Q", "A115Q", "T122K", "N124-", "S125-", "S126-", "Q127-"], "p6": ["D32E"], "p7": ["Q9P"], "rev": ["L18I", "P28Y", "S30K", "E47A", "W58R", "S61G", "T62S", "Y63F", "E68A", "S86D", "E87K", "A108T"], "tat": ["K19R", "D61G", "Q63E", "T64N", "H65N", "T74I", "P77A", "D80N"], "vif": ["N19R", "K22N", "Y27H", "H30Y", "I31R", "K33G", "N122S", "T155P"], "vpr": ["T19A", "G41S", "S94R"], "vpu": ["Q5E", "E66D", "-74D"]}, "labels": {"aa": "INT: I101L, M154I, K211R, V234L, E256D; RT-p51: A173T, S322T; RT-p66: A173T, S322T, I505V; gp120: T35K, Q142M, N157S, V305I, T308E, N311Y, H324Y, L388I, N433T; gp41: D129E, A212S, G215E, E225G, R229Q, D230G, I245F, A268I, V310A, V318I, A321V; nef: T23A, P24E, V33A, H192R, V194I, L198K, Y202F, K204Q; p17: D14E, S54A, Q59K, A83V, C87F, Q90R, K95S, I104L, K112Q, K113Q, A115Q, T122K, N124-, S125-, S126-, Q127-; p6: D32E; p7: Q9P; rev: L18I, P28Y, S30K, E47A, W58R, S61G, T62S, Y63F, E68A, S86D, E87K, A108T; tat: K19R, D61G, Q63E, T64N, H65N, T74I, P77A, D80N; vif: N19R, K22N, Y27H, H30Y, I31R, K33G, N122S, T155P; vpr: T19A, G41S, S94R; vpu: Q5E, E66D, -74D", "clade": "CRF66_BF1"}}, "children": [{"name": "CRF66_BF1_NODE_0000001", "node_attrs": {"div": 0.10909, "clade_membership": {"value": "CRF66_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A1242G", "C1243T", "C2063A", "C2613T", "G4870A", "T4988A", "C5213A", "A5233G", "T5237C", "A5447C", "A5621T", "G5626T", "T5654C", "A5718G", "G6086A", "-6172C", "-6201C", "C6202A", "-6204G", "C6222A", "A6786G", "C6822T", "T6826A", "T6888C", "-6947A", "-6952A", "-6955A", "-6957T", "-6959A", "-6960A", "-6961T", "-6995G", "-6997A", "-6998T", "-6999C", "-7000T", "-7001A", "-7002A", "A7025C", "T7489C", "C7931A", "G8050A", "G8245A", "C8412G", "A8414G", "T8851A", "G8905C"], "gp120": ["-113N", "-114S", "-115T", "-117S", "-119L", "-121E", "-123Q", "N161S", "S162N", "E315K", "M345T", "D365N", "-368L", "-371T", "-372E", "-373S"], "gp41": ["D113N"], "nef": ["E176P", "R188T"], "p2": ["T10-"], "p24": ["I6L", "T171V"], "pro": ["L89M"], "rev": ["A68T"], "tat": ["N24T"], "vif": ["S95N"], "vpr": ["P37I", "Y45H"], "vpu": ["E5V"]}, "labels": {"aa": "gp120: -113N, -114S, -115T, -117S, -119L, -121E, -123Q, N161S, S162N, E315K, M345T, D365N, -368L, -371T, -372E, -373S; gp41: D113N; nef: E176P, R188T; p2: T10-; p24: I6L, T171V; pro: L89M; rev: A68T; tat: N24T; vif: S95N; vpr: P37I, Y45H; vpu: E5V"}}, "children": [{"name": "OK011543", "node_attrs": {"div": 0.14297, "accession": "OK011543", "clade_membership": {"value": "CRF66_BF1"}, "country": {"value": "ES"}, "date": {"value": 2010.0}, "Strain_name": {"value": "PV106451"}, "LANL_subtype": {"value": "CRF66_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C127T", "C151T", "C173T", "C175T", "T200C", "G206A", "C274G", "T288C", "G365C", "G369A", "G379A", "A380T", "A399G", "G401C", "A435C", "T467C", "T473C", "A571T", "A576G", "C603A", "A606C", "G608T", "A609G", "A617G", "A653G", "C669A", "G671A", "C672A", "A675C", "G677A", "A689G", "A692G", "A747C", "G806A", "G810A", "G818A", "T858C", "C897T", "T983C", "A1112G", "A1190T", "G1256A", "A1271C", "G1302A", "A1442G", "C1444-", "A1445-", "A1446-", "A1448C", "-1455A", "G1476A", "A1496G", "A1525G", "G1588A", "T1646C", "A1657G", "C1670G", "T1676C", "T1682C", "G1691A", "C1692A", "G1709A", "C1724T", "C1767A", "T1783A", "C1795T", "T1796C", "T1978A", "C1985A", "A1988T", "A1993G", "T2013C", "A2075C", "G2080A", "C2263T", "A2350G", "T2393C", "C2485T", "A2524G", "A2593G", "T2613G", "G2693A", "G2725A", "T2740C", "A2764G", "A2794G", "A2884G", "G2947A", "G3019A", "T3181C", "A3196G", "A3200G", "G3264A", "A3265G", "G3325A", "C3394T", "C3412T", "A3463G", "A3490G", "T3497A", "C3533G", "T3559G", "T3566C", "C3577T", "A3629C", "T3644G", "G3664A", "A3766G", "T3793G", "G3802A", "C3889T", "G3989A", "T4006C", "T4024C", "G4131C", "C4132T", "A4150G", 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"T6213A", "G6214T", "A6278C", "T6298C", "G6303A", "A6320C", "A6333G", "A6336G", "C6337T", "A6338C", "G6339A", "T6340A", "T6373A", "A6394C", "C6446T", "G6458A", "A6465C", "G6466A", "A6489G", "A6505G", "A6520G", "A6599T", "T6600C", "G6611A", "C6618A", "G6638C", "T6656C", "A6661G", "A6682G", "-6697A", "-6698C", "-6699A", "-6700G", "-6701A", "-6702T", "G6725A", "A6734G", "T6735A", "A6775G", "G6776C", "A6777C", "T6787A", "C6790A", "A6805G", "-6809A", "A6812G", "A6818-", "T6823C", "A6825C", "-6830C", "-6831C", "-6832C", "A6841G", "A6848C", "A6859T", "T6946C", "-6953A", "-6954T", "-6956C", "-6958T", "-6962A", "-6963G", "-6964T", "-6965A", "-6966C", "-6967A", "-6996A", "A7033G", "C7064A", "G7065A", "C7096A", "T7105C", "G7132A", "T7150C", "C7152T", "A7154G", "T7159C", "T7192C", "C7264A", "A7313G", "A7315G", "G7341C", "A7456G", "A7504G", "A7532C", "A7542G", "T7555G", "G7640A", "C7645T", "C7658G", "A7688C", "A7782G", "C7801T", "T7876C", "T7877G", "C7921T", "C7930T", "A7936G", "G7942C", "A8002G", 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["H27Y", "K36T", "F39L", "R41K", "K63I", "T74P", "R92K", "R93G", "N101T", "I128R", "I154V", "Q178R"], "vpr": ["S41G", "A55T", "I60L", "I63T", "A89G"], "vpu": ["L7S", "A15V", "L27I", "E58D", "A63T", "D74H", "P76L"]}, "labels": {"aa": "INT: D6E, V72I, S119T, I268S; RT-p51: T173R, A200T, T369A, R390K, W410*; RT-p66: T173R, A200T, T369A, L377V, R390K, W410*, S468T, Q480E, D488E, S491P, K512Q, L517V; gp120: A2D, T3A, E4T, L6E, V56I, N64H, T104S, N105S, -106V, -107N, -109G, -110T, -111T, -112P, -116P, -118T, -120Y, M142L, R150K, I156L, N159D, N160S, N162Q, D202N, K204T, K212R, I249Y, A253T, T255N, E262Q, C268R, H280Q, A291T, D294E, R307G, E308P, Y311R, N312E, -319K, K320E, K322-, N327-, K332Q, -367I, -370S, -374N, -384D, R404K, N414K, T433I, N434D; gp41: M4V, G13A, K77Q, Q80R, Q119E, E129Q, N160S, S192A, N239S, A243S, H258R, E272R, R276Q, S293I, S302N, T306A, R334T; nef: A15T, R19K, M20L, A23D, E24G, I43L, A50S, A53P, E63D, V85I, L87F, H89F, Q107R, R178K, K182V, F191R, I194L; p1: H9R; p17: E12K, R15N, R22G, I34L, Y79F, T81A, R90K, K91H, I92V, Q112K, Q113S, K114Q; p2: T8N, N9T, A11-, -12T; p24: V27I, E180D, V191I; p6: P5T, Q30K, L35Q, A39V; p7: K20R, R41K; pro: D60E, L63T, I64L, I72T, I93L; rev: S8N, K30E, E32Q, I52V, I55L, G61I, G90E, Q95E, T108A, E111D; tat: R7K, Y26H, F32Y, S68P, Q76R, R78P; vif: H27Y, K36T, F39L, R41K, K63I, T74P, R92K, R93G, N101T, I128R, I154V, Q178R; vpr: S41G, A55T, I60L, I63T, A89G; vpu: L7S, A15V, L27I, E58D, A63T, D74H, P76L"}}}, {"name": "CRF66_BF1_NODE_0000002", "node_attrs": {"div": 0.11703000000000001, "clade_membership": {"value": "CRF66_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A377T", "A455G", "T583C", "A604G", "T620A", "C678A", "A770G", "C774A", "A776G", "A903T", "C1004T", "A1743-", "C1744-", "C1745-", "-1746A", "-1747C", "-1748T", "T1752C", "A1775C", "A1839G", "C1986T", "A2311G", "A2612G", "G3431T", "G4183A", "A4333G", "C4652A", "G4678T", "G4679T", "G4695A", "A4860G", "G5024A", "C5049A", "G5563C", "A5564C", "C5627T", "A5746G", 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T58S; p6: E32D; pro: K14R; rev: D86N, K87E; tat: E63P; vif: N22K, R31I, G37R, R92G, N95H, P155T"}}, "children": [{"name": "JN251902", "node_attrs": {"div": 0.15095, "accession": "JN251902", "clade_membership": {"value": "CRF66_BF1"}, "country": {"value": "PY"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02PY_PSP0093"}, "LANL_subtype": {"value": "CRF66_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "A399C", "G452A", "T467C", "T473C", "T482C", "G579A", "A618G", "G644A", "A689G", "C749G", "G806A", "T824C", "C875T", "C897T", "T917C", "C944T", "T962A", "T978A", "T979C", "G1016A", "G1022A", "A1050T", "A1074G", "A1115G", "A1157G", "C1169T", "G1242T", "T1243G", "C1244T", "A1274G", "A1278G", "A1279G", "T1299C", "G1302A", "G1313C", "T1335C", "G1404A", "A1445C", "A1452C", "-1455G", "G1476A", "G1498A", "A1562G", "C1670A", "A1673G", "C1680A", "A1687G", "A1700G", "A1719T", "C1761A", "G1784T", "C1826T", "C1831T", "A1832G", "A1857T", "A1867G", "T1978G", "T2013C", "G2023A", "G2026A", 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"G5747T", "A5790G", "G5811-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5827G", "C5859G", "A5861-", "C5862-", "A5863-", "A5869G", "A5911G", "A5914T", "A6022G", "G6023A", "G6029C", "A6030C", "C6044T", "T6100C", "C6139T", "-6170T", "-6171A", "C6172T", "-6173A", "-6174A", "-6175T", "A6177C", "T6178A", "C6183T", "T6187C", "A6188T", "C6190T", "G6195A", "T6196G", "A6197T", "A6202T", "G6204A", "-6205C", "A6206T", "-6207C", "G6214A", "G6215C", "A6217G", "T6250G", "A6265T", "A6304G", "T6331C", "A6336G", "G6339A", "G6425A", "T6457G", "A6464G", "G6490A", "T6511C", "T6523A", "G6572A", "A6574G", "G6575A", "A6576G", "A6581C", "G6588A", "C6612T", "C6618A", "A6682G", "-6692A", "-6693G", "T6694C", "G6773A", "A6785T", "G6786T", "G6788A", "A6798G", "A6806-", "A6807-", "G6808-", "A6810-", "A6811-", "A6812-", "G6814A", "T6815A", "T6816G", "T6824A", "T6827G", "T6829C", "-6830T", "-6831C", "-6832A", "-6833T", "-6834T", "A6850C", "C6875T", "G6935A", "G6936A", "-6953G", "-6954A", "-6956A", "-6958T", "-6989A", "-6991C", "G6995A", "-6996C", "A7005G", "C7006A", "A7010C", "C7014T", "T7015C", "G7054A", "C7064A", "C7084T", "A7107G", "C7108A", "C7152G", "G7162T", "C7170T", "A7190G", "T7192C", "G7256A", "A7299G", "A7313C", "T7400C", "T7432C", "A7504G", "G7517A", "G7519C", "A7532C", "G7552A", "G7628A", "C7633T", "G7640A", "C7658G", "A7668G", "G7672A", "A7688G", "G7702A", "A7744T", "G7790A", "A7791G", "G7862A", "T7876G", "A7931G", "G7938A", "A8050C", "C8065T", "T8106C", "G8158T", "G8173A", "C8221T", "G8264A", "G8276A", "G8280T", "-8304C", "A8305T", "-8373A", "A8458G", "T8477C", "G8490T", "A8503C", "T8595G", "A8657G", "C8684T", "T8740C", "C8741T", "A8746T", "G8762A", "T8786G", "G8795T", "T8832C", "G8861A", "T8864G", "G8875A", "A8886G", "C8905A", "A8922G", "A8936G", "C8978A", "-9014G", "G9016C", "C9018A", "A9019G", "G9020A", "C9023G", "G9024C", "A9026G", "C9028A", "T9029C", "T9068C", "A9082G", "A9135G"], "INT": ["N17T", "M50I", "L101I", "I154L", "T206S", "R211K"], "RT-p51": ["T35V", "M41L", "K103N", "C162S", "D169E", "Y181C", "G196E", "A200T", "E203K", "T215Y", "L228R", "A286T", "A297T", "V317A", "A360T", "T419I"], "RT-p66": ["T35V", "M41L", "K103N", "C162S", "D169E", "Y181C", "G196E", "A200T", "E203K", "T215Y", "L228R", "A286T", "A297T", "V317A", "A360T", "L377V", "T419I"], "gp120": ["A2G", "T3-", "V56M", "E57K", "E59P", "N64Y", "N105-", "N108-", "-111N", "-112Y", "-116D", "-118L", "-120Q", "N132K", "S157N", "N159S", "A191T", "N201K", "K204E", "E240K", "D241S", "I243L", "R245K", "A253V", "T255N", "H280S", "Y311F", "K315R", "K318-", "K320-", "G361K", "-367E", "L368I", "-370N", "E372T", "-374N", "-375G", "I386L", "T387I", "N418R", "T433S", "K436N", "T439I", "N446D", "V468I", "K482R"], "gp41": ["M4L", "V72I", "K77Q", "D109N", "Q119E", "K122R", "Q147H", "D163S", "V187I", "L191M", "I210V", "S212N", "I268T", "E272G", "W285C", "V321I", "A325I", "C326F", "R334T"], "nef": ["V11I", "K39R", "A50S", "D54A", "I133T", "Y135F", "E151D", "M173I", "D174E", "R178K", "K182V", "T188H", "I194V"], "p17": ["V82I", "S95G"], "p2": ["-10P"], "p24": ["L6M", "L83T", "T107S", "I115V", "V171C", "N183G", "V191I", "G225S"], "p6": ["L1I", "N3S", "S14C", "S24P", "-26K", "Q28-", "S51L"], "p7": ["R11K"], "pro": ["T12A", "K20M", "D60E", "I72T", "I93L"], "rev": ["Y28R", "A54E", "T68P", "L73F", "V104L", "V109I"], "tat": ["T40S", "S68P", "I74T", "A77T"], "vif": ["F39V", "R41K", "D61G", "I66V", "H95Y", "Y111H", "H127R", "P131H", "I159A"], "vpr": ["Y15H", "A19T", "N28S", "T84I", "R88S"], "vpu": ["V13I", "A15T", "A16G", "D44A", "R47V", "D66-", "M67-", "G68-", "-69V", "-70D", "-71M", "-72G"]}, "labels": {"aa": "INT: N17T, M50I, L101I, I154L, T206S, R211K; RT-p51: T35V, M41L, K103N, C162S, D169E, Y181C, G196E, A200T, E203K, T215Y, L228R, A286T, A297T, V317A, A360T, T419I; RT-p66: T35V, M41L, K103N, C162S, D169E, Y181C, G196E, A200T, E203K, T215Y, L228R, A286T, A297T, V317A, A360T, L377V, T419I; gp120: A2G, T3-, V56M, E57K, E59P, N64Y, N105-, N108-, -111N, -112Y, -116D, -118L, -120Q, N132K, S157N, N159S, A191T, N201K, K204E, E240K, D241S, I243L, R245K, A253V, T255N, H280S, Y311F, K315R, K318-, K320-, G361K, -367E, L368I, -370N, E372T, -374N, -375G, I386L, T387I, N418R, T433S, K436N, T439I, N446D, V468I, K482R; gp41: M4L, V72I, K77Q, D109N, Q119E, K122R, Q147H, D163S, V187I, L191M, I210V, S212N, I268T, E272G, W285C, V321I, A325I, C326F, R334T; nef: V11I, K39R, A50S, D54A, I133T, Y135F, E151D, M173I, D174E, R178K, K182V, T188H, I194V; p17: V82I, S95G; p2: -10P; p24: L6M, L83T, T107S, I115V, V171C, N183G, V191I, G225S; p6: L1I, N3S, S14C, S24P, -26K, Q28-, S51L; p7: R11K; pro: T12A, K20M, D60E, I72T, I93L; rev: Y28R, A54E, T68P, L73F, V104L, V109I; tat: T40S, S68P, I74T, A77T; vif: F39V, R41K, D61G, I66V, H95Y, Y111H, H127R, P131H, I159A; vpr: Y15H, A19T, N28S, T84I, R88S; vpu: V13I, A15T, A16G, D44A, R47V, D66-, M67-, G68-, -69V, -70D, -71M, -72G"}}}, {"name": "JN251903", "node_attrs": {"div": 0.15469, "accession": "JN251903", "clade_membership": {"value": "CRF66_BF1"}, "country": {"value": "PY"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02PY_PSP0094"}, "LANL_subtype": {"value": "CRF66_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G379A", "A418C", "G424A", "T426C", "A494T", "A576G", "G614T", "G619C", "A632C", "T641C", "A678G", "C679T", "A701G", "A747C", "G762A", "G771A", "G818A", "G887A", "G1067A", "A1070G", "C1094T", "A1106G", "G1109A", "A1160G", "A1193G", "G1256A", "G1277A", "C1292A", "G1313A", "G1346A", "G1354C", "A1359T", "T1421C", "A1449G", "A1450G", "A1452G", "C1456-", "T1457-", "-1458T", "-1459C", "-1460C", "A1485C", "C1492A", "T1502G", "A1528C", "A1543G", "G1552A", "A1589G", "C1613T", "G1621A", "A1622C", "G1626A", "C1627A", "C1692A", "G1709A", "C1753T", "A1772G", "G1773A", "T1783A", "T1790G", "A1963G", "C1981T", "C2003T", "C2005T", "G2038T", "T2087C", "A2113C", "A2210T", "C2211T", "A2241G", "A2293G", "C2503T", "T2542C", "T2620C", "A2641G", "T2668C", "G2682T", "A2713G", "G2714C", "A2830G", "C2839T", "G2869A", "T2935C", "A2938G", "A2959C", "C2985T", "T2996C", "A3080T", "A3107T", "G3127A", "A3190G", "A3192G", "A3205C", "G3224C", "T3253C", "G3264A", "T3276A", "T3349C", "T3380C", "T3436C", "A3451G", "G3494C", "G3523A", "C3533G", "T3541A", "C3542T", "A3543C", "G3544T", "T3602C", "A3630G", "A3642G", "C3688T", "C3712T", "A3736G", "G3775A", "T3793C", "G3805T", "C3808A", "A3825G", "A3835G", "T3865A", "A3901G", "A3931G", "C4078T", "T4085C", "C4129T", "A4150T", "A4222G", "A4228G", "T4247C", "A4372G", "G4388T", "A4677G", "A4694G", "G4696A", "T4712C", "T4730C", "C4771A", "A4802C", "T4820C", "A4869C", "A4888C", "T4916C", "G4951A", "T4969G", "G4982T", "A5021G", "C5038T", "T5047G", "T5072C", "A5119G", "A5148T", "T5170C", "G5179T", "A5277T", "C5280T", "C5281T", "A5282T", "T5292G", "G5363A", "C5385A", "C5444A", "A5556G", "T5568C", "A5569C", "A5601G", "A5603G", "T5617G", "G5620A", "T5621C", "A5646G", "A5659C", "A5712G", "T5727C", "T5739A", "-5803G", "-5804A", "-5805C", "-5806A", "-5807T", "-5808G", "-5809G", "-5810G", "A5840T", "G5842A", "T5899C", "A5958C", "A5965G", "A5983G", "A6020G", "G6029A", "C6044A", "A6050G", "C6097T", "-6170G", "-6171C", "T6184A", "A6186G", "A6194G", "A6200T", "-6205G", "A6206G", "-6207G", "C6208G", "C6209A", "C6212A", "C6221A", "A6222G", "G6226A", "C6233A", "C6275A", "C6289T", "T6322C", "A6323G", "T6328C", "A6394G", "A6478G", "G6490C", "C6496T", "A6525G", "G6532A", "A6573G", "C6632T", "T6658C", "-6692C", "-6693A", "G6714A", "A6752C", "A6777T", "G6788C", "A6801G", "-6809G", "G6819C", "A6820T", "G6821C", "T6822A", "T6823A", "T6824C", "A6825T", "A6826C", "T6827C", "-6833A", "-6834A", "A6839G", "A6840C", "A6850T", "-6953C", "-6954T", "A6955G", "-6956T", "-6958A", "-6983G", "-6984T", "-6985A", "-6986A", "-6987A", "-6988T", "-6989G", "-6991A", "-6996G", "G7004A", "A7063G", "A7148C", "A7160G", "A7161G", "C7164A", "T7172G", "A7177G", "A7249T", "G7269A", "A7289C", "G7307A", "G7309A", "A7366G", "C7433T", "A7439C", "G7440A", "C7474T", "G7508A", "C7561A", "C7597T", "T7630G", "T7642G", "G7691A", "A7693C", "G7702C", "A7714G", "T7715G", "A7734T", "G7735A", "T7751A", "A7782G", "C7801T", "T7813C", "G7835A", "A7840G", "A7880G", "C7921G", "C7930T", "C7941A", "G7964A", "A8009C", "G8030A", "C8031G", "T8036A", "A8079G", "T8103C", "T8106A", "G8118A", "C8213T", "A8219G", "C8223T", "A8255G", "T8277C", "-8304G", "G8329A", "T8348A", "G8368A", "T8369A", "-8373T", "C8382T", "C8386A", "T8387G", "A8388G", "G8402A", "C8451T", "G8453A", "A8469C", "C8471T", "G8540A", "T8543A", "C8590G", "T8595C", "C8640A", "A8739G", "T8747C", "T8759G", "A8823G", "C8840T", "A8863G", "T8864A", "T8887A", "C8904A", "A8935G", "G8954A", "T8993-", "G9025T", "C9078T", "A9099G"], "INT": ["E10D", "D11E", "N17S", "A205S"], "RT-p51": ["E6D", "T39L", "K49R", "G196V", "E207Q", "A297V", "I329L", "T338S", "K366R", "E370D", "V377L", "R390K", "L394Q"], "RT-p66": ["E6D", "T39L", "K49R", "G196V", "E207Q", "A297V", "I329L", "T338S", "K366R", "E370D", "R390K", "L394Q", "V467L", "Q480E", "Q483S", "K512R", "E516G"], "gp120": ["K35T", "E59K", "N66D", "-106A", "-109A", "-110T", "-111S", "-112T", "S114G", "-116S", "S117G", "-118G", "L119I", "-120K", "E121G", "Q123R", "Q127K", "Q141K", "N159V", "N160S", "S161D", "K212N", "K224R", "E240G", "L260F", "R287Q", "K300Q", "R307G", "E308V", "Y311S", "N312H", "K316R", "-319E", "K322T", "S323-", "Y324Q", "F325L", "-326L", "-328N", "K329A", "-367L", "-370V", "T371N", "S373T", "-376G", "-377S", "-378N", "-379N", "-380T", "T385-", "K432Q", "K436G", "T437N", "F440V", "R472K", "K479Q"], "gp41": ["V2I", "M4I", "R46Q", "V69I", "D109E", "N113E", "E129K", "E130N", "R133S", "S138A", "K144I", "L150M", "N160S", "V178I", "L191I", "I193V", "F206L", "P213Q", "G221R", "A243S", "F245I", "H259R", "V267A", "I268K", "L304F", "T306A", "T307I", "I318V"], "nef": ["S9K", "V11F", "P14S", "A15E", "I16V", "M20I", "I43L", "A83G", "V85L", "L100I", "I133V", "F139L", "N161D", "D174G", "K198R"], "p17": ["R15K", "K28T", "R30K", "T81A", "E93D", "S95T", "E99D", "T115V"], "p2": ["N9G", "-12S"], "p24": ["V11I", "A14T", "D187E", "G208A", "T210S"], "p6": ["P5T", "S24L", "D32N", "L35Q"], "p7": ["S4G", "K7Q", "P9Q", "I12M", "E21A", "K26R", "R29K", "R52N", "A54N"], "pro": ["H69Y"], "rev": ["K14R", "I18T", "R39K", "G61E", "F63Y", "N86K"], "tat": ["T23N", "N65H"], "vif": ["I31V", "R37K", "A62E", "N101T", "S122N", "I128R", "R132S", "T151V", "I154R", "Q178R", "T188S"], "vpr": ["Y15F", "E25D", "E58V", "A59V", "I60L", "I63S", "R94S"], "vpu": ["L4V", "V5T", "I18L", "D44E", "R47G", "D74H", "D78V", "V79I"]}, "labels": {"aa": "INT: E10D, D11E, N17S, A205S; RT-p51: E6D, T39L, K49R, G196V, E207Q, A297V, I329L, T338S, K366R, E370D, V377L, R390K, L394Q; RT-p66: E6D, T39L, K49R, G196V, E207Q, A297V, I329L, T338S, K366R, E370D, R390K, L394Q, V467L, Q480E, Q483S, K512R, E516G; gp120: K35T, E59K, N66D, -106A, -109A, -110T, -111S, -112T, S114G, -116S, S117G, -118G, L119I, -120K, E121G, Q123R, Q127K, Q141K, N159V, N160S, S161D, K212N, K224R, E240G, L260F, R287Q, K300Q, R307G, E308V, Y311S, N312H, K316R, -319E, K322T, S323-, Y324Q, F325L, -326L, -328N, K329A, -367L, -370V, T371N, S373T, -376G, -377S, -378N, -379N, -380T, T385-, K432Q, K436G, T437N, F440V, R472K, K479Q; gp41: V2I, M4I, R46Q, V69I, D109E, N113E, E129K, E130N, R133S, S138A, K144I, L150M, N160S, V178I, L191I, I193V, F206L, P213Q, G221R, A243S, F245I, H259R, V267A, I268K, L304F, T306A, T307I, I318V; nef: S9K, V11F, P14S, A15E, I16V, M20I, I43L, A83G, V85L, L100I, I133V, F139L, N161D, D174G, K198R; p17: R15K, K28T, R30K, T81A, E93D, S95T, E99D, T115V; p2: N9G, -12S; p24: V11I, A14T, D187E, G208A, T210S; p6: P5T, S24L, D32N, L35Q; p7: S4G, K7Q, P9Q, I12M, E21A, K26R, R29K, R52N, A54N; pro: H69Y; rev: K14R, I18T, R39K, G61E, F63Y, N86K; tat: T23N, N65H; vif: I31V, R37K, A62E, N101T, S122N, I128R, R132S, T151V, I154R, Q178R, T188S; vpr: Y15F, E25D, E58V, A59V, I60L, I63S, R94S; vpu: L4V, V5T, I18L, D44E, R47G, D74H, D78V, V79I"}}}]}]}, {"name": "CRF66_BF1_NODE_0000003", "node_attrs": {"div": 0.10402, "clade_membership": {"value": "CRF66_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T153C", "T159C", "G167A", "G354A", "T534G", "G1016A", "T1403C", "A1607G", "A1700G", "A1712G", "G1720T", "A1733G", "C1960T", "G2027A", "A2241G", "C2296T", "A2713G", "C2885T", "A2925G", "A3097T", "A3107T", "A3130C", "G3211A", "C3275T", "G3529A", "C3610A", "T4405C", "C4883T", "C5019T", "T5062G", "C5168T", "T5170A", "T5439G", "A5556G", "T5584C", "T5731A", "A5742G", "T5826C", "C5827G", "A6020G", "C6087A", "A6176G", "A6177-", "G6179A", "C6198A", "C6469T", "A6508G", "A6544G", "G6547A", "G6572C", "C6670T", "-6697A", "-6698C", "-6699A", "-6700G", "-6702T", "A6785T", "A6820G", "G6936A", "C7006A", "G7026A", "T7751C", "G7862A", "G8285-", "C8286-", "T8287-", "A8288-", "T8289-", "T8290-", "C8291-", "T8292-", "C8293-", "A8295-", "C8296-", "A8297-", "T8298-", "A8299-", "C8300-", "C8301-", "T8302-", "A8303-", "A8305-", "T8371-", "A8503C", "A8584T", "T8829A", "C8868A", "G8871C", "A8874G", "T8887A", "G8991A"], "RT-p51": ["K49R", "K277R", "T338S"], "RT-p66": ["K49R", "K277R", "T338S"], "gp120": ["T78E", "E240Q", "R391K"], "gp41": ["E137Q", "V187I", "R276H", "A328-", "I329-", "L330-", "H331-", "I332-", "P333-", "R334-"], "nef": ["Y81F", "V85F", "C163S", "Q170L", "D177H", "R178G", "F191L"], "p17": ["V7I", "S67A", "L75F"], "p6": ["S14I"], "p7": ["S4G"], "pro": ["L63P", "V77I"], "rev": ["K14R"], "tat": ["S70P"], "vif": ["E134D", "T151A", "I159R"], "vpu": ["L42I"]}, "labels": {"aa": "RT-p51: K49R, K277R, T338S; RT-p66: K49R, K277R, T338S; gp120: T78E, E240Q, R391K; gp41: E137Q, V187I, R276H, A328-, I329-, L330-, H331-, I332-, P333-, R334-; nef: Y81F, V85F, C163S, Q170L, D177H, R178G, F191L; p17: V7I, S67A, L75F; p6: S14I; p7: S4G; pro: L63P, V77I; rev: K14R; tat: S70P; vif: E134D, T151A, I159R; vpu: L42I"}}, "children": [{"name": "OK011547", "node_attrs": {"div": 0.13426, "accession": "OK011547", "clade_membership": {"value": "CRF66_BF1"}, 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"-6998G", "-6999A", "-7000A", "T7009C", "G7040A", "A7060G", "A7112C", "C7124T", "G7132A", "A7133G", "C7134T", "A7154G", "A7155G", "A7157G", "A7161G", "G7162T", "C7164A", "G7181C", "G7182A", "A7241C", "G7256A", "A7315G", "G7317T", "G7339A", "A7428G", "G7508A", "A7533G", "G7552A", "C7584A", "T7604A", "C7605A", "C7625A", "A7626T", "G7627A", "C7630G", "C7633G", "A7641G", "T7642A", "G7672A", "G7691A", "A7692C", "A7713C", "A7722G", "G7759T", "A7855G", "A7873G", "T7877G", "C7921G", "C7930T", "C7931A", "A7937G", "G7938T", "G7992A", "A8009C", "A8011C", "A8018C", "C8035G", "A8175G", "C8189T", "A8191G", "G8194A", "T8197G", "G8349A", "G8350A", "A8364-", "G8365-", "T8366-", "A8400C", "T8426C", "C8503A", "A8525C", "G8531T", "T8558C", "C8590G", "C8648T", "C8652A", "A8656G", "C8694G", "C8699A", "T8747C", "A8780G", "A8804G", "A8806G", "G8822C", "A8827T", "G8830A", "T8832C", "G8834A", "A8837T", "T8864G", "C8871G", "C8873G", "A8882G", "A8892C", "A8901C", "G8902C", "A8912G", "A8935G", "G8970A", "A8971G", "T8972A", "T8973A", "G8974T", "-9009T"], "INT": ["I84M", "L102S", "S119P", "T124A", "T125A", "R211K", "K219N", "N222K", "I268L"], "RT-p51": ["K11Q", "T39S", "I178M", "A200T", "I202V", "E207D", "Q334Y", "V377L"], "RT-p66": ["K11Q", "T39S", "I178M", "A200T", "I202V", "E207D", "Q334Y", "R463K", "I482V", "Q483L", "L484V", "S491A", "K540R"], "gp120": ["K5E", "Y11H", "V37A", "V57K", "N64Y", "I81V", "-106L", "-107K", "N108E", "-109D", "-110A", "E122-", "Q127K", "V137I", "K140E", "M142L", "H145Q", "S157G", "N159K", "N160S", "N161D", "E204T", "P210L", "I243V", "A253T", "V264I", "S278G", "I279V", "I281M", "A288T", "K318E", "-319K", "S323G", "-328N", "K332I", "S336P", "D365S", "N369-", "V396I", "N420H", "T427V", "N434G", "N435D", "K436S", "T437N", "G443Q", "I463L", "V468I"], "gp41": ["G5V", "N42S", "V69I", "K77R", "T94N", "S101N", "Q108I", "D109E", "D110E", "D113G", "E130T", "Q137A", "N140S", "L152F", "S192A", "F206L", "S212V", "G230D", "N239H", "Y291C", "N298K", "A325V"], "nef": ["G3N", "S8-", "Q61H", "E63D", "A83G", "Q104K", "K105R", "Q118E", "K155R", "E160D", "N162I", "S163N", "D174E", "K176T", "H177E", "K184Q", "S187P", "K198R"], "p17": ["G11E", "E12K", "K18R", "K28Q", "A54S", "F75L", "R90Q", "A118Q"], "p2": ["N9H", "T10A", "M14L"], "p24": ["A14P", "V27I", "A31G", "S33N", "E79D", "I91V", "T110N", "P207S", "G225S"], "p6": ["I14T", "G16R", "G18R", "T22A", "P23-", "S24P", "P25S", "-26Q", "K31E", "A39I", "K42R"], "p7": ["K7F", "P9H", "R10Q", "R11K", "S12R", "K14V", "G19C", "K20G", "A25T", "K26T", "R29W", "R32P", "K38R", "Q45H", "M46L", "K47M", "T50C", "R52G"], "pro": ["L19Q", "I36M", "C67D", "I72V"], "rev": ["V16I", "K30S", "I55L", "E57A", "G61S", "L63V", "T114I", "K115E", "E116K", "*117E"], "tat": ["T23P", "F32Y", "A58T", "P59S", "S62N", "A77S"], "vif": ["H27Y", "G33R", "K36S", "F39S", "K63E", "I66V", "S86A", "A151V", "I154V", "K179Q", "S186N"], "vpr": ["E6A", "Y45H"], "vpu": ["Q2K", "L7T", "A16V", "I43L", "P76L"]}, "labels": {"aa": "INT: I84M, L102S, S119P, T124A, T125A, R211K, K219N, N222K, I268L; RT-p51: K11Q, T39S, I178M, A200T, I202V, E207D, Q334Y, V377L; RT-p66: K11Q, T39S, I178M, A200T, I202V, E207D, Q334Y, R463K, I482V, Q483L, L484V, S491A, K540R; gp120: K5E, Y11H, V37A, V57K, N64Y, I81V, -106L, -107K, N108E, -109D, -110A, E122-, Q127K, V137I, K140E, M142L, H145Q, S157G, N159K, N160S, N161D, E204T, P210L, I243V, A253T, V264I, S278G, I279V, I281M, A288T, K318E, -319K, S323G, -328N, K332I, S336P, D365S, N369-, V396I, N420H, T427V, N434G, N435D, K436S, T437N, G443Q, I463L, V468I; gp41: G5V, N42S, V69I, K77R, T94N, S101N, Q108I, D109E, D110E, D113G, E130T, Q137A, N140S, L152F, S192A, F206L, S212V, G230D, N239H, Y291C, N298K, A325V; nef: G3N, S8-, Q61H, E63D, A83G, Q104K, K105R, Q118E, K155R, E160D, N162I, S163N, D174E, K176T, H177E, K184Q, S187P, K198R; p17: G11E, E12K, K18R, K28Q, A54S, F75L, R90Q, A118Q; p2: N9H, T10A, M14L; p24: A14P, V27I, A31G, S33N, E79D, I91V, T110N, P207S, G225S; p6: I14T, G16R, G18R, T22A, P23-, S24P, P25S, -26Q, K31E, A39I, K42R; p7: K7F, P9H, R10Q, R11K, S12R, K14V, G19C, K20G, A25T, K26T, R29W, R32P, K38R, Q45H, M46L, K47M, T50C, R52G; pro: L19Q, I36M, C67D, I72V; rev: V16I, K30S, I55L, E57A, G61S, L63V, T114I, K115E, E116K, *117E; tat: T23P, F32Y, A58T, P59S, S62N, A77S; vif: H27Y, G33R, K36S, F39S, K63E, I66V, S86A, A151V, I154V, K179Q, S186N; vpr: E6A, Y45H; vpu: Q2K, L7T, A16V, I43L, P76L"}}}, {"name": "CRF66_BF1_NODE_0000005", "node_attrs": {"div": 0.12129999999999999, "clade_membership": {"value": "CRF66_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G224A", "A377G", "C507A", "C558T", "C669A", "G671C", "C672A", "G677A", "C926T", "A1278G", "A2715C", "G3431T", "A3570C", "A3675G", "A3825C", "T4147C", "C4833A", "G4835T", "C4890A", "C5356A", "T5472A", "A5567G", "C5663G", "A5781T", "G5794A", "A6030-", "C6208-", "G6303A", "A6464G", "G6575A", "G6906T", "C7096A", "C7152-", "G7631T", "G7790A", "A7791G", "A7929T", "A8029G", "C8047T", "G8402A", "A8403G", "G8404A", "T8646C", "C8869A", "G8888A"], "INT": ["N17T"], "RT-p51": ["E207A"], "RT-p66": ["E207A", "A446S", "E492A", "K527R"], "gp120": ["E59-", "-113N", "R150K", "H280Q", "R351M"], "gp41": ["D163S", "H209L"], "nef": ["R21E", "D28E", "D54A", "Y102H"], "p17": ["Q112N", "Q113K"], "rev": ["I18V", "A54E", "P67S"], "tat": ["F32L", "N64S"], "vif": ["Q83N", "L102I"], "vpr": ["T84N"], "vpu": ["A19G", "E58D", "A63T"]}, "labels": {"aa": "INT: N17T; RT-p51: E207A; RT-p66: E207A, A446S, E492A, K527R; gp120: E59-, -113N, R150K, H280Q, R351M; gp41: D163S, H209L; nef: R21E, D28E, D54A, Y102H; p17: Q112N, Q113K; rev: I18V, A54E, P67S; tat: F32L, N64S; vif: Q83N, L102I; vpr: T84N; vpu: A19G, E58D, A63T"}}, "children": [{"name": "MK298150", "node_attrs": {"div": 0.14226999999999998, "accession": "MK298150", "clade_membership": {"value": "CRF66_BF1"}, "country": {"value": "ES"}, "date": {"value": 2017.0}, "Strain_name": {"value": "X4352_2"}, "LANL_subtype": {"value": "CRF66_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T163C", "G261-", "C262-", "A435C", "T473C", "T506C", "G534T", "G579A", "A604G", "T641C", "C897T", "T902C", "A1279C", "G1313A", "A1367G", "G1404A", "G1419A", "A1461G", "G1498A", "C1541T", "A1719G", "G1766A", "A1775G", "C1826T", "C1903T", "T1978A", "A2012G", "T2013A", "T2086A", "A2203C", "A2210T", "A2459G", "G2498A", "G2539A", "C2596T", "A2627T", "G2704C", "A2764G", "A2809G", "G2821A", "C3067G", "C3095G", "G3100A", "T3112C", "T3223G", "G3259A", "A3334C", "G3451T", "G3631A", "G3805A", "G3884A", "A3973T", "G3989A", "G4051A", "C4141T", "G4183A", "T4282A", "C4435T", "G4573A", "T4655C", "A4687G", "A4721G", "C4726A", "T4820A", "G4829A", "T4891C", "G4951A", "T5003C", "T5016C", "T5019C", "A5046C", "A5085G", "G5093A", "G5123A", "G5140A", "G5153C", "T5203C", "G5257A", "T5293C", "T5314C", "T5319A", "C5385A", "A5400G", "T5616C", "A5622G", "G5626T", "A5640C", "G5653A", "T5677A", "C5678T", "G5700A", "G5747T", "C5805T", "G5864A", "A5865C", "A5867G", "A5869T", "T5887C", "C5920T", "T6024A", "G6029-", "A6045C", "A6095G", "T6155C", "T6163-", "A6164-", "C6165-", "T6166-", "A6167-", "A6168-", "T6169-", "G6176-", "T6178-", "A6179-", "A6188G", "A6189T", "A6192C", "A6194C", "T6196A", "-6201G", "G6203-", "A6206-", "T6210C", "G6277T", "C6289T", "G6329A", "T6457G", "T6460G", "G6466C", "A6489G", "C6490A", "T6493G", "T6577G", "A6583G", "C6631T", "G6644A", "C6713A", "G6773A", "G6776A", "T6785C", "A6797G", "A6810G", "A6811T", "A6813G", "G6814A", "T6815G", "A6817T", "C6822T", "T6823C", "A6825T", "T6826A", "-6830C", "-6831C", "-6832A", "T6916C", "A6935C", "-6947G", "-6980A", "-6981G", "-6982A", "-6983A", "-6984A", "-6985C", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "-6991A", "-6992A", "-6993C", "-6994T", "-6995A", "-6996T", "-6997A", "-6998A", "-6999A", "-7000C", "-7001A", "-7002A", "A7016C", "A7033G", "C7045T", "G7132A", "A7148C", "A7149C", "T7150G", "A7151-", "T7153-", "C7164G", "T7171C", "G7256A", "G7309A", "A7312G", "G7441A", "G7492A", "G7495A", "A7533G", "A7583G", "A7620G", "A7626T", "G7627A", "C7651T", "A7668G", "C7742A", "C7755A", "T7774C", "A7782G", "T7796A", "A7858G", "A7862G", "G7938A", "C8131G", "A8266G", "G8276A", "A8308G", "G8349A", "G8350A", "T8366C", "G8376-", "G8377-", "C8378-", "C8382G", "A8400C", "T8426G", "A8461G", "G8476A", "A8525C", "G8531T", "A8654G", "C8684T", "C8687T", "A8804G", "G8929A", "G8942T", "G8970A", "A8971G", "T8972A", "T8973A", "G8974T", "A9026T"], "INT": ["V37I", "V72I"], "RT-p51": ["E36D", "T39S", "K122E", "V135I", "I178L", "E203D", "D324E", "Q334D", "E413D"], "RT-p66": ["E36D", "T39S", "K122E", "V135I", "I178L", "E203D", "D324E", "Q334D", "L377V", "E413D", "K452N"], "gp120": ["E4T", "K5D", "V57E", "N64P", "I81V", "N105-", "N108-", "-114V", "-115T", "-116R", "-117N", "-118S", "-119T", "-120L", "-121E", "-123P", "Q141H", "N201K", "N202E", "E204D", "N212R", "N213K", "D241K", "I243M", "V264I", "E308K", "Y311H", "N312D", "K361Q", "-367R", "-368N", "-370E", "-371T", "-372I", "-373N", "-374N", "-375G", "I388L", "N414K", "N432P", "T433-", "T437S", "V468I"], "gp41": ["M4T", "K77R", "T94A", "K106R", "Q108L", "D110Y", "K122R", "Q147K", "A151E", "N160S", "S165T", "I187V", "I210L", "S212N", "H276Q", "A325-", "G326-", "R327-", "-332I", "-333G", "-334R"], "nef": ["G3N", "G12-", "P14A", "H40R", "S45N", "Q61H", "E63D", "R196K"], "p17": ["I34L", "A67S", "V82I", "Q115P"], "p2": ["-12V", "I13-"], "p24": ["N183A", "G225S", "V230I"], "p6": ["I14V"], "p7": ["R11K"], "pro": ["D60E", "I72E"], "rev": ["Y28P", "Q95E"], "tat": ["T63A", "I74S", "A77T"], "vif": ["K34R", "T47N", "D78E", "I102T", "S122N", "S144P", "I154L", "T167A", "G185E", "M189I"], "vpr": ["D7N", "E17Q", "F72Y", "R94S"], "vpu": ["L7S", "A16I", "S24I", "R47I"]}, "labels": {"aa": "INT: V37I, V72I; RT-p51: E36D, T39S, K122E, V135I, I178L, E203D, D324E, Q334D, E413D; RT-p66: E36D, T39S, K122E, V135I, I178L, E203D, D324E, Q334D, L377V, E413D, K452N; gp120: E4T, K5D, V57E, N64P, I81V, N105-, N108-, -114V, -115T, -116R, -117N, -118S, -119T, -120L, -121E, -123P, Q141H, N201K, N202E, E204D, N212R, N213K, D241K, I243M, V264I, E308K, Y311H, N312D, K361Q, -367R, -368N, -370E, -371T, -372I, -373N, -374N, -375G, I388L, N414K, N432P, T433-, T437S, V468I; gp41: M4T, K77R, T94A, K106R, Q108L, D110Y, K122R, Q147K, A151E, N160S, S165T, I187V, I210L, S212N, H276Q, A325-, G326-, R327-, -332I, -333G, -334R; nef: G3N, G12-, P14A, H40R, S45N, Q61H, E63D, R196K; p17: I34L, A67S, V82I, Q115P; p2: -12V, I13-; p24: N183A, G225S, V230I; p6: I14V; p7: R11K; pro: D60E, I72E; rev: Y28P, Q95E; tat: T63A, I74S, A77T; vif: K34R, T47N, D78E, I102T, S122N, S144P, I154L, T167A, G185E, M189I; vpr: D7N, E17Q, F72Y, R94S; vpu: L7S, A16I, S24I, R47I"}}}, {"name": "OK011549", "node_attrs": {"div": 0.15314, "accession": "OK011549", "clade_membership": {"value": "CRF66_BF1"}, "country": {"value": "ES"}, "date": {"value": 2016.0}, "Strain_name": {"value": "PV844167"}, "LANL_subtype": {"value": "CRF66_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C125T", "C127T", "A152C", "C159T", "C173T", "C175T", "T182G", "T232C", "G237C", "T253G", "A256-", "C274G", "A276G", "G367A", "G379A", "G401A", "A419G", "C462A", "T466A", "G471C", "A499G", "C528T", "A530T", "A576G", "T595G", "C623T", "T641G", "G690-", "C691-", "A692-", "T718C", "A839G", "C875T", "C974T", "T1058C", "A1073G", "A1217G", "A1230C", "A1279G", "G1313C", "A1446T", "C1492A", "A1494G", "T1511C", "A1528T", "A1544G", "C1556A", "T1754G", "T1790C", "T1796C", "T1797C", "C1798T", "A1804G", "G1841A", "C1985A", "A1988C", "T1997A", "C2003T", "T2013C", "A2027G", "A2197G", "A2293G", "A2341G", "G2362A", "G2392A", "T2464A", "C2488T", "G2498C", "T2542C", "A2548G", "T2581C", "A2612G", "G2630A", "G2902A", "G2925A", "G3019A", "A3064G", "A3096G", "T3097G", "C3130T", "A3136G", "G3154A", "A3196G", "G3221T", "G3224T", "C3252T", "G3264A", "C3266T", "A3268G", "A3302G", "G3391A", "C3415T", "T3469A", "A3490G", "G3508A", "T3517C", "T3541C", "G3569A", "A3629C", "G3679A", "T3742C", "A3770G", "G3796A", "A3816G", "C3843T", "A4012G", "G4335A", "A4494G", "C4543A", "T4827C", "G4856A", "C4871T", "A5021G", "A5121C", "C5125T", "G5159A", "C5160T", "A5215C", "C5242T", "G5265T", "A5364C", "A5367G", "G5403A", "G5463A", "T5466C", "G5556A", "G5557A", "C5559T", "A5560G", "G5563A", "G5565A", "C5602T", "C5614T", "C5627T", "G5629T", "T5654C", "G5668A", "A5685G", "G5717A", "G5742A", "A5790G", "C5826T", "G5842A", "A5866C", "A5871G", "C5917T", "T5923C", "T5941C", "A5946G", "T5956C", "T6026-", "T6027-", "G6029A", "-6030T", "T6036C", "C6044A", "A6059C", "A6061C", "G6130A", "A6167G", "-6170T", "-6171A", "-6172C", "-6173A", "-6174A", "-6175T", "-6177G", "T6178C", "-6180C", "A6182G", "A6186G", "A6194G", "A6198G", "C6199T", "-6201A", "-6204T", "-6205A", "-6207C", "-6208A", "C6211G", "C6212G", "T6213C", "G6214A", "G6215C", "A6216T", "A6217G", "G6220T", "C6221A", "C6222A", "A6236G", "C6238A", "A6251G", "T6279A", "G6280A", "C6305G", "T6307G", "T6322G", "T6331G", "A6332G", "A6333G", "C6337T", "T6373C", "G6458A", "A6573C", "T6577C", "A6589C", "G6611A", "G6638C", "T6652C", "T6721C", "G6725A", "T6760C", "A6767C", "C6779G", "A6799T", "G6803A", "T6804C", "A6806G", "-6809G", "A6811G", "G6819A", "G6821T", "T6829C", "-6833A", "-6834A", "A6839G", "A6840C", "A6848C", "A6854G", "T6860C", "C6874T", "T6876C", "A6886T", "A6944C", "A6948-", "C6949-", "A6950-", "C6951-", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964C", "-6965A", "-6966C", "-6967A", "-6968A", "-6969G", "-6970G", "-6971A", "-6972A", "-6973A", "-6974A", "-6975A", "-6976T", "-6977G", "-6978A", "T7003-", "G7004-", "G7005-", "A7006-", "A7026G", "A7037G", "C7089A", "A7095T", "A7113G", "-7152G", "A7155C", "T7165G", "C7170T", "A7190G", "A7197G", "G7269A", "G7310A", "G7311C", "A7313C", "A7373C", "A7375G", "A7428G", "G7459A", "G7552A", "C7597T", "C7625G", "G7628A", "T7631C", "A7632C", "C7633A", "G7712C", "T7715G", "T7757C", "A7765C", "C7801T", "A7855G", "C7921T", "C7930T", "C7931A", "G7987A", "C7988A", "T8106C", "A8130T", "A8170G", "T8176C", "T8265G", "T8277C", "A8309C", "-8367A", "-8368G", "-8369T", "-8370A", "-8371G", "-8372A", "-8373G", "-8374C", "-8375T", "G8376A", "G8393A", "G8394A", "A8396C", "G8407A", "G8409A", "A8413C", "T8426A", "G8429A", "G8487A", "C8500A", "C8514T", "T8543C", "C8590G", "C8607T", "A8608T", "C8666T", "C8699T", "A8739G", "G8762T", "C8835T", "C8873T", "C8904A", "A8912G", "T8914G", "A8935C", "-8978C", "G9008-", "-9009A", "C9045T"], "INT": ["K14R", "A23V", "R187K", "K240R", "D256E"], "RT-p51": ["D123E", "V135L", "T173A", "V179I", "R277K", "Q334R", "A376S", "V377L", "T386I", "R390K", "T403A"], "RT-p66": ["D123E", "V135L", "T173A", "V179I", "R277K", "Q334R", "A376S", "T386I", "R390K", "T403A", "A492T", "K512Q", "I559V"], "gp120": ["E4D", "K6R", "K31R", "L58I", "V61A", "K69H", "N105D", "-107N", "-109G", "-110T", "-111A", "-112S", "-114N", "-115G", "-116T", "-123K", "N128E", "M133V", "M142K", "L151V", "I156M", "N159E", "N160G", "Q240P", "D241N", "R245S", "A253T", "E262Q", "A291T", "I305L", "R307G", "Q309E", "E315N", "V317T", "K318E", "-319E", "-327N", "-328A", "K329T", "T330I", "I331Q", "K332F", "F333D", "N334S", "S335P", "S337P", "L341P", "N364H", "D365-", "T366-", "N369-", "-378N", "-379G", "-380T", "-381R", "-382K", "-383N", "-384E", "K391R", "I395V", "A412E", "N414I", "T433S", "N434T", "T439I", "N446D", "K448R", "R472K"], "gp41": ["G3T", "M4L", "I24L", "N42S", "Q108E", "D109N", "D110P", "S138A", "K154N", "Q229K", "I268T", "H276L", "V321G", "I336L"], "nef": ["-9S", "-10R", "-11A", "G12S", "E18N", "L20I", "R22Q", "A23T", "Q24P", "A49T", "A53D", "A83G", "H89F", "I133V", "R188S", "L191R", "K198T"], "p17": ["G11E", "R15K", "F44Y", "V46L", "E55G", "Q65Y", "T81A", "F87C", "R90Q", "D102E", "K114S", "A118Q", "-124A", "-125S", "V128-", "S129-"], "p2": ["T8S"], "p24": ["N183G"], "p6": ["S40L", "K42R"], "p7": ["P9Q", "R10G", "E21V"], "pro": ["V15I", "P63T", "I64L", "C67S", "H69Y", "I72T", "I77V"], "rev": ["R14K", "A15V", "R17Q", "A47K", "T108A"], "tat": ["G61S", "S62G", "I74L"], "vif": ["K179Q", "T180I", "H192Y"], "vpr": ["E6A", "A19I", "W54L", "R88G"], "vpu": ["P3S", "L7V", "A8S", "V21I", "R37K", "V79I"]}, "labels": {"aa": "INT: K14R, A23V, R187K, K240R, D256E; RT-p51: D123E, V135L, T173A, V179I, R277K, Q334R, A376S, V377L, T386I, R390K, T403A; RT-p66: D123E, V135L, T173A, V179I, R277K, Q334R, A376S, T386I, R390K, T403A, A492T, K512Q, I559V; gp120: E4D, K6R, K31R, L58I, V61A, K69H, N105D, -107N, -109G, -110T, -111A, -112S, -114N, -115G, -116T, -123K, N128E, M133V, M142K, L151V, I156M, N159E, N160G, Q240P, D241N, R245S, A253T, E262Q, A291T, I305L, R307G, Q309E, E315N, V317T, K318E, -319E, -327N, -328A, K329T, T330I, I331Q, K332F, F333D, N334S, S335P, S337P, L341P, N364H, D365-, T366-, N369-, -378N, -379G, -380T, -381R, -382K, -383N, -384E, K391R, I395V, A412E, N414I, T433S, N434T, T439I, N446D, K448R, R472K; gp41: G3T, M4L, I24L, N42S, Q108E, D109N, D110P, S138A, K154N, Q229K, I268T, H276L, V321G, I336L; nef: -9S, -10R, -11A, G12S, E18N, L20I, R22Q, A23T, Q24P, A49T, A53D, A83G, H89F, I133V, R188S, L191R, K198T; p17: G11E, R15K, F44Y, V46L, E55G, Q65Y, T81A, F87C, R90Q, D102E, K114S, A118Q, -124A, -125S, V128-, S129-; p2: T8S; p24: N183G; p6: S40L, K42R; p7: P9Q, R10G, E21V; pro: V15I, P63T, I64L, C67S, H69Y, I72T, I77V; rev: R14K, A15V, R17Q, A47K, T108A; tat: G61S, S62G, I74L; vif: K179Q, T180I, H192Y; vpr: E6A, A19I, W54L, R88G; vpu: P3S, L7V, A8S, V21I, R37K, V79I"}}}]}]}]}]}]}, {"name": "NODE_0000178", "node_attrs": {"div": 0.08114, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G424A", "T467C", "A516C", "A518G", "G585A", "T586C", "A599G", "A607G", "T641C", "-704A", "-709G", "-711A", "-713C", "G2984A", "C3567T", "G3574A", "G3595A", "A3651G", "A3667G", "T3695G", "G3718A", "A3799C", "C3826T", "T3856C", "C4075T", "A5576T", "C5612A", "T5620C", "T5654C", "T5727C", "A6079G", "C6087A", "A6088G", "A6167G", "C6208A", "C6209A", "G6215A", "G6303A", "-6689A", "-6691A", "G6773A", "A6810C", "T6826A", "C6856T", "-6950A", "-6993C", "G7040A", "T7123G", "A7198G", "G7238A", "C7250T", "A7276G", "C7280A", "A7281G", "A7289C", "T7322A", "C7597T", "C7603T", "T7604A", "A7626T", "G7672A", "A7676G", "G7677A", "T7685A", "A7689G", "A7692T", "G7702C", "G7729A", "C7762T", "A7847G", "A7885G", "T8007G", "T8035C", "A8079G", "A8922G", "A8924G", "-8971C"], "RT-p51": ["A297T"], "RT-p66": ["A297T", "S491L", "N519S", "S534A"], "gp120": ["T78E", "R150K", "N159D", "E315K", "H324Q", "-384D", "V396I", "E462K", "Q476R", "K479Q"], "gp41": ["Q108L", "S125D", "S128T", "E130L", "R133T", "I182V", "K199Q", "I210L", "V235G", "H259R"], "nef": ["T51N"], "p17": ["R30K", "I61L", "V84T"], "rev": ["I21F", "Y63H", "E68T"], "tat": ["D67V"]}, "labels": {"aa": "RT-p51: A297T; RT-p66: A297T, S491L, N519S, S534A; gp120: T78E, R150K, N159D, E315K, H324Q, -384D, V396I, E462K, Q476R, K479Q; gp41: Q108L, S125D, S128T, E130L, R133T, I182V, K199Q, I210L, V235G, H259R; nef: T51N; p17: R30K, I61L, V84T; rev: I21F, Y63H, E68T; tat: D67V"}}, "children": [{"name": "results/subtype_trees/CRF40_BF1.nwk", "node_attrs": {"div": 0.11866, "clade_membership": {"value": "CRF40_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["-36T", "-86T", "-87T", "-88G", "-89A", "-90G", "-91T", "-92G", "-93C", "-94T", "-95T", "A263T", "-305A", "G379A", "G401A", "A410G", "C456T", "A485T", "T495G", "G520A", "A571T", "A676G", "A680G", "A699G", "-714A", "C746T", "C749G", "G810A", "A833G", "C872T", "C897T", "C902T", "G908A", "C926T", "T978C", "A998G", "G1256A", "C1439T", "C1444T", "-1452A", "-1455G", "A1461G", "G1476A", "C1610T", "C1613T", "A1619G", "T1646C", "C1724T", "T1752C", "A1837T", "G1858A", "G1912A", "A1918G", "A1979G", "T1986C", "G2023A", "C2047T", "G2065C", "T2080C", "T2087C", "G2155A", "G2224A", "A2275G", "G2294A", "A2304G", "T2353C", "T2356C", "G2362A", "T2386C", "T2464A", "G2498C", "C2527T", "A2612G", "A2627T", "A2716C", "C2720T", "G2725A", "A2738T", "C2828A", "A2830G", "T2831C", "A2929G", "A3028G", "T3170G", "C3171G", "G3173A", "T3181C", "A3205G", "G3217A", "T3223C", "T3225C", "A3268G", "T3331C", "G3442A", "T3497C", 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"A6168C", "T6169C", "-6170T", "-6171T", "-6172C", "-6180G", "A6185C", "T6187A", "C6189A", "T6193C", "T6196C", "-6204G", "-6212A", "-6214A", "-6216C", "-6217C", "T6295C", "G6339A", "T6511C", "A6589G", "C6618T", "-6693G", "A6734G", "T6735A", "A6785C", "C6792A", "G6793A", "-6809G", "A6812G", "G6819A", "G6821-", "-6830C", "-6831C", "-6977G", "-7001A", "-7002A", "-7005A", "C7014T", "G7026A", "T7039A", "C7045T", "T7081C", "G7123A", "G7162T", "A7246G", "A7275G", "G7310A", "G7311C", "A7315G", "G7440A", "G7513A", "G7519A", "A7532C", "G7633A", "A7666G", "A7668G", "A7669G", "G7691A", "C7699T", "G7701A", "G7726A", "A7782G", "G7790A", "A7791C", "T7796A", "C7801T", "G7846A", "G7868A", "A7929G", "G8008A", "A8019C", "G8050A", "A8152G", "C8215G", "C8221T", "C8223T", "A8227T", "T8232C", "G8245A", "A8254G", "T8266A", "T8267G", "G8269A", "G8276A", "A8284G", "C8286G", "T8290C", "G8317A", "G8323A", "A8342G", "A8367C", "A8370G", "A8372G", "G8373C", "T8374C", "T8375C", "C8386A", "T8387G", "C8406A", "A8409G", "C8411T", "C8412G", "C8413A", "T8414G", "T8440C", "C8451T", "A8456G", "A8469C", "A8516G", "G8531T", "G8540A", "C8585T", "T8595G", "T8603C", "C8640T", "C8652A", "C8669A", "T8675C", "C8684T", "C8687T", "T8864G", "C8868G", "C8869A", "G8875A", "G8882A", "A8886C", "T8887A", "C8904A", "G8905A", "C8906A", "A8930C", "G8954A", "G9007A", "C9018G", "G9033-", "A9095G", "G9096C"], "INT": ["S119P", "T122I", "T124A", "T125A", "A205S", "K211R"], "RT-p51": ["D67N", "K70R", "D123E", "V135L", "I178L", "T215Y", "Q245M", "S359G", "A360T"], "RT-p66": ["D67N", "K70R", "D123E", "V135L", "I178L", "T215Y", "Q245M", "S359G", "A360T", "L377T", "S468P", "E471D"], "gp120": ["A3M", "L6W", "V56M", "E59G", "N105A", "-106F", "S162N", "T255I", "H280S", "N311H", "N312K", "T313K", "-319A", "K320E", "-378N", "-379N", "-380T", "T387I", "R391K", "-436N", "K474R"], "gp41": ["G3T", "I24M", "R46K", "K77Q", "I84L", "S101N", "K122R", "D129G", "L130I", "T133N", "N160S", "S165T", "A189T", "H209R", "N239T", "T307I", "V310A", "L322A", "A325I", "A328G"], "nef": ["S9R", "I10V", "V11P", "A15E", "T23A", "P24E", "V33A", "I43L", "E63D", "Q104K", "D174E", "R178K", "K182Q", "R188K"], "p17": ["R15K", "S54A", "G62E", "Y79F", "K114R", "T122A", "Q127K"], "p2": ["A7V", "I13-"], "p24": ["I6L", "V27I"], "p6": ["S24P"], "pro": ["N61D", "L63P"], "rev": ["E11D", "A54K", "E57D", "I102V"], "tat": ["E2D", "A58S", "D61G", "S62R", "T74A"], "vif": ["N19K", "Y27H", "H30Y", "K33R", "K36R", "G37K", "R50K", "K63E", "I66V", "G101D", "I124L", "H127R", "R132S", "T155K", "V166I", "K179R"], "vpr": ["N28S", "G41N", "A55T", "Q77H", "A89S", "A93S"], "vpu": ["P3S", "L7A", "A11G", "A15V", "D44E", "R47A", "V65M", "-74H", "N80D"]}, "labels": {"aa": "INT: S119P, T122I, T124A, T125A, A205S, K211R; RT-p51: D67N, K70R, D123E, V135L, I178L, T215Y, Q245M, S359G, A360T; RT-p66: D67N, K70R, D123E, V135L, I178L, T215Y, Q245M, S359G, A360T, L377T, S468P, E471D; gp120: A3M, L6W, V56M, E59G, N105A, -106F, S162N, T255I, H280S, N311H, N312K, T313K, -319A, K320E, -378N, -379N, -380T, T387I, R391K, -436N, K474R; gp41: G3T, I24M, R46K, K77Q, I84L, S101N, K122R, D129G, L130I, T133N, N160S, S165T, A189T, H209R, N239T, T307I, V310A, L322A, A325I, A328G; nef: S9R, I10V, V11P, A15E, T23A, P24E, V33A, I43L, E63D, Q104K, D174E, R178K, K182Q, R188K; p17: R15K, S54A, G62E, Y79F, K114R, T122A, Q127K; p2: A7V, I13-; p24: I6L, V27I; p6: S24P; pro: N61D, L63P; rev: E11D, A54K, E57D, I102V; tat: E2D, A58S, D61G, S62R, T74A; vif: N19K, Y27H, H30Y, K33R, K36R, G37K, R50K, K63E, I66V, G101D, I124L, H127R, R132S, T155K, V166I, K179R; vpr: N28S, G41N, A55T, Q77H, A89S, A93S; vpu: P3S, L7A, A11G, A15V, D44E, R47A, V65M, -74H, N80D", "clade": "CRF40_BF1"}}, "children": [{"name": "EU735539", "node_attrs": {"div": 0.15397, "accession": "EU735539", "clade_membership": {"value": "CRF40_BF1"}, "country": {"value": "BR"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05BRRJ200"}, "LANL_subtype": {"value": "CRF40_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T24C", "A47G", "C96T", "A152C", "T153A", "T200C", "G224A", "T396C", "A416G", "A500G", "G599A", "C603A", "A645G", "G680A", "A706C", "G709A", "C774A", "T861G", "A878G", "T926C", "G963A", "A977G", "C1004T", "T1172A", "C1178T", "G1313A", "A1340G", "T1439C", "C1453A", "A1454T", "G1455A", "T1457A", "-1458G", "-1459C", "-1460A", "A1494G", "T1501C", "A1528T", "T1547C", "G1588A", "A1614G", "C1615A", "G1617A", "A1618T", "T1682C", "A1762G", "G1794A", "A1840G", "A1857G", "T1864C", "A1907G", "A1963G", "C1986A", "C1987A", "C2087T", "A2164G", "A2216C", "A2223G", "A2227T", "A2254C", "A2290G", "T2315A", "T2335C", "C2353T", "C2388G", "A2404C", "A2413G", "G2417A", "A2459G", "G2473A", "A2482G", "T2497C", "C2498T", "T2499G", "C2503T", "A2518G", "C2575T", "G2580A", "A2645G", "G2683A", "G2693A", "G2704T", "G2714A", "C2716T", "C2717T", "C2739A", "A2750C", "A2764G", "A2808C", "A2829C", "G2921A", "T2922C", "A2925G", "G2929A", "T2935C", "C2968A", "G3010A", "T3049C", "A3142G", "A3214G", "A3334C", "T3472A", "A3484G", "A3490G", "C3499T", "A3521C", "G3562A", "T3566G", "T3567C", "G3622A", "G3685A", "A3736G", "T3779C", "A3862G", "G4051A", "A4063G", "A4109G", "C4110T", "A4159G", "C4181A", "G4183A", "A4270G", "G4279A", "G4495A", "G4549A", "C4569T", "T4656C", "G4684A", "G4689A", "A4697C", "T4799C", "A4817G", "C4871A", "A4904G", "A4937C", "T4943C", "G5009A", "C5034T", "G5066A", "G5075A", "C5168A", "T5170G", "G5187A", "T5224G", "A5248T", "T5286C", "C5303A", "C5444A", "C5551T", "G5558A", "A5566G", "C5572A", "G5599T", "T5651C", "A5659G", "G5668A", "T5684C", "A5704T", "G5730A", "G5755A", "A5787G", "T5799-", "G5802-", "G5803-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5845A", "A5856G", "G5858A", "C5862T", "A5869T", "T5870A", "T5871C", "A5915G", "T5929C", "C6004T", "A6022G", "G6029A", "G6030A", "A6076C", "T6145C", "C6193G", "A6195G", "C6196G", "-6198C", "C6199A", "A6200C", "-6201C", "G6203A", "-6205C", "-6207A", "T6210C", "-6211A", "-6213C", "A6215C", "C6216T", "C6221T", "A6251G", "C6256T", "A6276C", "A6281G", "G6314C", "A6323G", "A6324G", "T6337A", "A6339G", "C6340T", "T6341G", "C6343A", "G6345A", "G6346A", "C6347T", "A6349C", "A6353C", "T6373C", "G6649A", "T6658C", "A6659T", "A6685G", "A6686G", "G6693C", "C6713A", "G6725A", "G6767A", "A6773G", "A6797G", "A6820G", "-6821T", "A6826G", "T6829C", "-6832T", "-6833A", "-6834A", "A6837C", "T6838A", "A6840C", "A6848C", "G6935A", "G6936A", "-6947A", "-6948A", "-6949T", "C6951A", "-6952A", "-6953A", "-6954C", "-6955T", "-6956A", "-6957A", "-6958T", "-6959A", "-6960A", "-6961T", "-6962A", "-6963A", "-6964C", "-6965A", "-6966C", "-6967A", "-6968G", "-6969G", "-6970A", "-6971A", "-6972C", "-6973T", "-6974A", "-6975A", "-6976T", "-6978G", "-6979A", "-6980A", "-6981C", "-6982T", "C6993-", "A7002C", "A7036G", "C7081T", "C7101T", "A7120G", "A7123T", "T7144G", "A7148G", "A7149G", "A7152C", "T7153C", "A7154C", "T7156G", "T7162G", "C7170T", "A7190G", "A7197G", "A7238C", "A7312G", "A7313C", "T7321C", "A7375G", "A7402G", "T7489C", "A7504C", "A7513T", "A7604G", "T7615C", "T7622A", "C7625T", "G7627A", "T7630C", "G7631A", "G7640A", "G7669A", "A7673G", "A7688G", "A7691T", "T7699C", "A7700T", "A7701C", "A7706C", "G7720A", "A7747C", "G7753A", "G7754T", "G7759A", "A7764C", "T7801C", "G7847A", "C7874A", "G7915A", "A7918G", "G7937A", "T7968C", "G8006A", "A8069T", "G8181T", "G8204A", "T8205C", "G8215T", "T8218C", "G8231A", "T8268C", "G8274A", "G8280A", "G8284A", "A8317G", "T8337A", "C8382A", "C8383A", "G8387A", "A8406C", "C8445A", "G8446A", "C8460T", "C8471T", "A8489C", "G8490T", "T8498C", "G8499C", "T8531A", "T8546C", "T8558A", "G8595A", "A8642G", "C8648T", "A8656G", "T8759G", "G8762A", "C8768T", "T8770A", "T8786A", "C8789A", "G8864T", "C8886G", "A8887T", "A8893G", "G8924A", "G8968A", "C9017T", "T9074C"], "INT": ["T112V", "A265V"], "RT-p51": ["M41L", "K43R", "E44D", "E53D", "L74I", "A98G", "K103N", "V108I", "K122E", "L135C", "C162Y", "M184V", "A200T", "E203D", "E207N", "H208Y", "K219Q", "K238T", "M245T", "V276T", "K277R", "D291E", "E413D"], "RT-p66": ["M41L", "K43R", "E44D", "E53D", "L74I", "A98G", "K103N", "V108I", "K122E", "L135C", "C162Y", "M184V", "A200T", "E203D", "E207N", "H208Y", "K219Q", "K238T", "M245T", "V276T", "K277R", "D291E", "E413D", "K476Q", "L491A"], "gp120": ["N1S", "A2T", "W6T", "T21A", "G59K", "E74D", "-107N", "-109T", "-110L", "-123S", "M133V", "Q141P", "K143E", "V154L", "N157S", "N161K", "N162S", "Y163E", "R164K", "N167H", "T269S", "S278G", "S280P", "A291T", "D294E", "V305I", "R307G", "K315E", "-326P", "-328T", "K329T", "K332Q", "G361K", "D365N", "T366K", "-367T", "-368N", "-370N", "-371T", "-376G", "-377T", "N379G", "-381T", "T416I", "N432G", "N433K", "N434E", "N436K", "T439I", "N446D", "K448R", "K462Q"], "gp41": ["M4L", "N101A", "S107T", "D110K", "D113N", "I124V", "I130L", "N133S", "I135L", "E148D", "A151S", "K154T", "D163T", "V182I", "L191I", "A212T", "I222T", "G235R", "S256C", "S293I", "V301T", "A310T", "R324K", "G326D", "L345Q"], "nef": ["P14N", "R35K", "H40Y", "A50S", "A53P", "D63E", "V85I", "K105R", "F139L", "F143Y", "D149E", "E174D", "Q182V", "K184R"], "p17": ["Q90K", "K91R", "I104V", "N124T", "S125N"], "p2": ["T10N", "A11T", "-12A", "-13V"], "p24": ["L15I", "S44A", "A78T"], "p6": ["Q28R", "A39T"], "p7": ["R10G", "I12T", "E21V", "R41K", "T50D", "E51M"], "pro": ["K20R", "N37D", "P63Q"], "rev": ["A15T", "S30N", "R53Q", "Q74L", "E111D"], "tat": ["T23N", "P59S", "G61D", "T64A", "Q66K", "S87P"], "vif": ["R33K", "A35T", "K37N", "S95R", "E117D"], "vpr": ["L22M", "S28N", "H40Q", "E48D", "I61T", "L67M"], "vpu": ["V15A", "I18V", "V21I", "V26A", "I33L", "A50T", "M65V", "D80N"]}, "labels": {"aa": "INT: T112V, A265V; RT-p51: M41L, K43R, E44D, E53D, L74I, A98G, K103N, V108I, K122E, L135C, C162Y, M184V, A200T, E203D, E207N, H208Y, K219Q, K238T, M245T, V276T, K277R, D291E, E413D; RT-p66: M41L, K43R, E44D, E53D, L74I, A98G, K103N, V108I, K122E, L135C, C162Y, M184V, A200T, E203D, E207N, H208Y, K219Q, K238T, M245T, V276T, K277R, D291E, E413D, K476Q, L491A; gp120: N1S, A2T, W6T, T21A, G59K, E74D, -107N, -109T, -110L, -123S, M133V, Q141P, K143E, V154L, N157S, N161K, N162S, Y163E, R164K, N167H, T269S, S278G, S280P, A291T, D294E, V305I, R307G, K315E, -326P, -328T, K329T, K332Q, G361K, D365N, T366K, -367T, -368N, -370N, -371T, -376G, -377T, N379G, -381T, T416I, N432G, N433K, N434E, N436K, T439I, N446D, K448R, K462Q; gp41: M4L, N101A, S107T, D110K, D113N, I124V, I130L, N133S, I135L, E148D, A151S, K154T, D163T, V182I, L191I, A212T, I222T, G235R, S256C, S293I, V301T, A310T, R324K, G326D, L345Q; nef: P14N, R35K, H40Y, A50S, A53P, D63E, V85I, K105R, F139L, F143Y, D149E, E174D, Q182V, K184R; p17: Q90K, K91R, I104V, N124T, S125N; p2: T10N, A11T, -12A, -13V; p24: L15I, S44A, A78T; p6: Q28R, A39T; p7: R10G, I12T, E21V, R41K, T50D, E51M; pro: K20R, N37D, P63Q; rev: A15T, S30N, R53Q, Q74L, E111D; tat: T23N, P59S, G61D, T64A, Q66K, S87P; vif: R33K, A35T, K37N, S95R, E117D; vpr: L22M, S28N, H40Q, E48D, I61T, L67M; vpu: V15A, I18V, V21I, V26A, I33L, A50T, M65V, D80N"}}}, {"name": "CRF40_BF1_NODE_0000001", "node_attrs": {"div": 0.11877, "clade_membership": {"value": "CRF40_BF1"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "EU735538", "node_attrs": {"div": 0.15395999999999999, "accession": "EU735538", "clade_membership": {"value": "CRF40_BF1"}, "country": {"value": "BR"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04BRRJ115"}, "LANL_subtype": {"value": "CRF40_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G11A", "T12G", "T30C", "A46G", "A47C", "C48T", "T200G", "T201C", "A303T", "A305T", "A380G", "A386G", "T396C", "G407A", "A423C", "A425G", "G495T", "G519A", "A569G", "G614C", "G615A", "G676T", "A686G", "G699A", "A980G", "G1019A", "T1046A", "A1050T", "A1073G", "G1085A", "A1089G", "G1199A", "A1205G", "A1263T", "A1418G", "G1443A", "T1457A", "-1458A", "-1459A", "-1460T", "G1461A", "T1462C", "A1543G", "A1580G", "C1693T", "A1700G", "C1749T", "A1762G", "A1772G", "C1775A", "C1825A", "C1826G", "A1835G", "A1839G", "G1846A", "A1857G", "G1886A", "C1903T", "G1918A", "A1966G", "A2056G", "A2060G", "C2065T", "T2071C", "A2075C", "A2160G", "A2216T", "A2221G", "T2251C", "A2290G", "T2315A", "G2318A", "T2319C", "T2347A", "C2388G", "G2401C", "G2461A", "G2539A", "A2629C", "G2630A", "A2645G", "G2664C", "G2665A", "G2702A", "C2717T", "C2723T", "T2724G", "A2725G", "C2739A", "C2749G", "A2750G", "A2755G", "A2764G", "T2778A", "T2824C", "C2839T", "C2845T", "A2923G", "C2941A", "C2942A", "A3091G", "A3173G", "A3217G", "C3252T", "T3276A", "A3302T", "C3352T", "C3405T", "A3406G", "T3469G", "T3492C", "C3497T", "G3505A", "C3542T", "T3544C", "A3565G", "A3584T", "A3621T", "G3643A", "G3651A", "A3676C", "A3684G", "C3688T", "G3755T", "T3757A", "T3779C", "A3805G", "A3814G", "T3943C", "T3970C", "A4030G", "G4057A", "A4076C", "A4096G", "C4110T", "A4112G", "A4120T", "T4140C", "G4145A", "C4146A", "G4148A", "G4150A", "A4195G", "C4210T", "C4321T", "C4381T", "G4407A", "T4412C", "A4417G", "A4427T", "A4555G", "T4674C", "A4687G", "A4692G", "G4694T", "A4696G", "A4736G", "A4806C", "C4820T", "T4910C", "T4917C", "T4976C", "A5051G", "G5123A", "C5221T", "C5303A", "T5357G", "G5375A", "C5445T", "A5453T", "A5493G", "C5569T", "A5570G", "T5577A", "C5602T", "T5614C", "C5620G", "A5621T", "A5680C", "G5715A", "G5739A", "C5747T", "T5796G", "-5800A", "-5801T", "-5804A", "-5805A", "-5806A", "-5807T", "-5808G", "-5809G", "-5810G", "C5827G", "A5840T", "C5862A", "G5863T", "A5866C", "A5867C", "T5871G", "C5884A", "C5949G", "C5956A", "A5965G", "C6004T", "A6065G", "G6130A", "T6160G", "T6163C", "A6164G", "C6185G", "A6186T", "A6187T", "A6188C", "-6198C", "A6200C", "-6201A", "C6202G", "-6205G", "-6207T", "A6209G", "T6210A", "-6211C", "-6213G", "A6214C", "G6218C", "A6219T", "C6221A", "C6222A", "A6223G", "G6225A", "G6226A", "C6228A", "A6229G", "G6263C", "A6316G", "A6320C", "C6322T", "T6325C", "A6327G", "A6332G", "A6333G", "G6458A", "A6465C", "G6466A", "G6478A", "A6489C", "G6490A", "G6572A", "A6581G", "A6599C", "A6640G", "G6644A", "C6692G", "G6734A", "A6735T", "G6754A", "C6766T", "A6786G", "A6798G", "G6808A", "C6810G", "A6820G", "-6821T", "A6826G", "C6830G", "C6831G", "-6832A", "-6833G", "-6834C", "T6835A", "A6840T", "A6845-", "T6846-", "A6847-", "A6848-", "A6849-", "A6850-", "A6877G", "A6910G", "-6947G", "-6948A", "-6949C", "-6952A", "-6953G", "-6954A", "-6955A", "-6956A", "-6957T", "-6958T", "-6959G", "-6960A", "-6961A", "-6962G", "-6963C", "-6964T", "-6965A", "-6966A", "-6967T", "-6968C", "-6969A", "-6970C", "-6971A", "-6972C", "-6973A", "-6974A", "-6975A", "-6976T", "-6994T", "-6995A", "-6996A", "-6997T", "-6998G", "-6999A", "-7000T", "A7036G", "A7039G", "T7045C", "C7078T", "A7085G", "T7087G", "C7101T", "G7132A", "T7153G", "A7160G", "C7170T", "C7174T", "G7183A", "A7239G", "G7309A", "A7373C", "G7459A", "C7605A", "T7606G", "G7608A", "A7617G", "A7633C", "T7642C", "C7690A", "T7692C", "A7729G", "A7747C", "G7760A", "G7769A", "C7775T", "A7790G", "C7791A", "A7799C", "G7839C", "A7868G", "A7873G", "C7939A", "T7968C", "C7969A", "A7974G", "C8065T", "G8114C", "G8144C", "C8145T", "G8157T", "A8163G", "T8164C", "T8176C", "A8191G", "T8221C", "G8255A", "G8267A", "T8287C", "C8293A", "C8296T", "A8299C", "A8323T", "G8330A", "C8331G", "A8364G", "A8423T", "T8426G", "C8460T", "C8469A", "T8492C", "A8494C", "G8499C", "G8516A", "G8554A", "C8590G", "C8606T", "T8640C", "C8688A", "C8699T", "A8701T", "A8739G", "C8741T", "G8787A", "C8843T", "A8882G", "T8914G", "G8929T", "G8931A", "A8932T", "G8933C", "C8934A", "A8950T", "C8957T", "T8958C", "G9016C", "G9040T"], "INT": ["I101L", "T112I", "I113V", "I122T", "A124N", "A125T", "K136Q", "R211K", "T218S"], "RT-p51": ["K22R", "M41L", "L74I", "V75T", "A98G", "K102N", "L178F", "V179I", "M184V", "G190A", "E203K", "E207D", "H208Y", "L210W", "D218E", "K219E", "L228H", "M245K", "L283I", "T360A", "T386I", "L394Q", "T403S", "A437V"], "RT-p66": ["K22R", "M41L", "L74I", "V75T", "A98G", "K102N", "L178F", "V179I", "M184V", "G190A", "E203K", "E207D", "H208Y", "L210W", "D218E", "K219E", "L228H", "M245K", "L283I", "T360A", "T386I", "L394Q", "T403S", "A437V", "V466A", "P468S", "H483Y", "T497S", "Q509L", "S519N", "K527N", "K530R", "A554S"], "gp120": ["M3N", "E4D", "N5Q", "A32G", "D34E", "M56I", "N71D", "N102K", "T104A", "-109G", "-110T", "-111V", "-112H", "-113N", "-114N", "-115T", "-116Q", "-117G", "-118I", "-119D", "-120S", "-121T", "E122L", "-123K", "G124E", "A125E", "V137L", "I156L", "N158S", "N160G", "D202N", "K204T", "K212T", "E240K", "I243V", "I249L", "V264I", "S280G", "H311R", "K315R", "A319G", "-328G", "K329A", "T330N", "K332T", "-367E", "-368I", "-370H", "-371T", "N378-", "T380A", "-381N", "-382D", "-383N", "I395M", "I411V", "T416I", "N433K", "N434T", "N435H", "T437D", "T439I", "K462R"], "gp41": ["M24L", "N101K", "S102N", "N105S", "G129R", "I130T", "E148D", "D153N", "A156T", "N166H", "G179A", "T189A", "I222T", "E224G", "V271L", "A281L", "W285L", "N287S", "V318I", "A322I", "L340F", "A343S"], "nef": ["S8G", "D28E", "G29P", "H40Y", "L43I", "N51T", "A53P", "R71K", "A83G", "H116N", "Y120F", "I133V", "D149N", "F191C", "R196L", "E197I", "L198M", "Y203F", "C206R"], "p17": ["K30Q", "A54S", "E62K", "K91R", "E93D", "V94I", "R114M", "A122T"], "p2": ["V7I", "-12N", "-13T"], "p24": ["M96I", "T107S", "M118I", "S120G", "T178S"], "p6": ["P5L", "P23S", "Q28R", "D32E", "P49Q"], "p7": ["K26R"], "pro": ["L10V", "I13V", "K14R", "K20R", "D30N", "N88D", "I93L"], "rev": ["I19V", "F21Y", "P31T", "L73F", "C89S", "S99T", "L103F", "S106P", "K115E"], "tat": ["Y26F", "I39M", "H65C", "P77H", "S87Q"], "vif": ["Y30H", "K34R", "R36G", "K37R", "T74P", "Y111H"], "vpr": ["D7N", "L67M", "I84M"], "vpu": ["S3P", "Q5V", "I25L", "A47V", "H74D", "D78V"]}, "labels": {"aa": "INT: I101L, T112I, I113V, I122T, A124N, A125T, K136Q, R211K, T218S; RT-p51: K22R, M41L, L74I, V75T, A98G, K102N, L178F, V179I, M184V, G190A, E203K, E207D, H208Y, L210W, D218E, K219E, L228H, M245K, L283I, T360A, T386I, L394Q, T403S, A437V; RT-p66: K22R, M41L, L74I, V75T, A98G, K102N, L178F, V179I, M184V, G190A, E203K, E207D, H208Y, L210W, D218E, K219E, L228H, M245K, L283I, T360A, T386I, L394Q, T403S, A437V, V466A, P468S, H483Y, T497S, Q509L, S519N, K527N, K530R, A554S; gp120: M3N, E4D, N5Q, A32G, D34E, M56I, N71D, N102K, T104A, -109G, -110T, -111V, -112H, -113N, -114N, -115T, -116Q, -117G, -118I, -119D, -120S, -121T, E122L, -123K, G124E, A125E, V137L, I156L, N158S, N160G, D202N, K204T, K212T, E240K, I243V, I249L, V264I, S280G, H311R, K315R, A319G, -328G, K329A, T330N, K332T, -367E, -368I, -370H, -371T, N378-, T380A, -381N, -382D, -383N, I395M, I411V, T416I, N433K, N434T, N435H, T437D, T439I, K462R; gp41: M24L, N101K, S102N, N105S, G129R, I130T, E148D, D153N, A156T, N166H, G179A, T189A, I222T, E224G, V271L, A281L, W285L, N287S, V318I, A322I, L340F, A343S; nef: S8G, D28E, G29P, H40Y, L43I, N51T, A53P, R71K, A83G, H116N, Y120F, I133V, D149N, F191C, R196L, E197I, L198M, Y203F, C206R; p17: K30Q, A54S, E62K, K91R, E93D, V94I, R114M, A122T; p2: V7I, -12N, -13T; p24: M96I, T107S, M118I, S120G, T178S; p6: P5L, P23S, Q28R, D32E, P49Q; p7: K26R; pro: L10V, I13V, K14R, K20R, D30N, N88D, I93L; rev: I19V, F21Y, P31T, L73F, C89S, S99T, L103F, S106P, K115E; tat: Y26F, I39M, H65C, P77H, S87Q; vif: Y30H, K34R, R36G, K37R, T74P, Y111H; vpr: D7N, L67M, I84M; vpu: S3P, Q5V, I25L, A47V, H74D, D78V"}}}, {"name": "CRF40_BF1_NODE_0000002", "node_attrs": {"div": 0.12485, "clade_membership": {"value": "CRF40_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A227C", "A491G", "G607A", "A1643G", "T1653C", "C1656T", "A2341G", "C2584T", "C2626A", "A2829T", "A3805T", "A3825G", "T4207C", "A4642G", "C4820A", "A5082C", "A5462G", "T5487C", "-5800A", "-5801T", "-5804A", "-5805G", "-5806A", "-5807T", "-5808G", "-5809G", "-5810G", "-6213A", "C6217A", "A6303G", "G6314A", "T6315C", "A6336G", "C6692A", "G6814A", "-6832C", "-6992A", "-6995G", "-6996A", "-6998A", "-7000T", "A7040G", "A7297G", "C7433T", "C7463A", "C7755A", "C8171A", "C8209T", "A8222T", "A8851T", "C8873G", "C8966T"], "INT": ["E10D", "N17S"], "RT-p51": ["D177E"], "RT-p66": ["D177E"], "gp120": ["-123P", "K150R", "V154T", "N369-", "I396V"], "gp41": ["L54M", "A151E", "Q290K", "I307L"], "nef": ["Q170L", "D177E"], "p1": ["S8P"], "p2": ["-12V"], "rev": ["A108E"], "tat": ["K29R"], "vif": ["K19R", "D78E", "I166L"]}, "labels": {"aa": "INT: E10D, N17S; RT-p51: D177E; RT-p66: D177E; gp120: -123P, K150R, V154T, N369-, I396V; gp41: L54M, A151E, Q290K, I307L; nef: Q170L, D177E; p1: S8P; p2: -12V; rev: A108E; tat: K29R; vif: K19R, D78E, I166L"}}, "children": [{"name": "EU735537", "node_attrs": {"div": 0.15363, "accession": "EU735537", "clade_membership": {"value": "CRF40_BF1"}, "country": {"value": "BR"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05BRRJ055"}, "LANL_subtype": {"value": "CRF40_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T263G", "G265A", "G395A", "A423C", "G480A", "A520G", "C525T", "A530C", "T571A", "G579A", "A705G", "G709A", "C731T", "C774A", "A839G", "T861G", "T962G", "C1220T", "T1253G", "A1361C", "G1404A", "G1419A", "G1438A", "C1541A", "A1565G", "C1693T", "G1773A", "C1787T", "G1794A", "C1826G", "A1835G", "G1841A", "G1886A", "A1962G", "A1966G", "T1978G", "C2005T", "G2008A", "T2041G", "C2044T", "A2060G", "C2281T", "A2293G", "A2368G", "G2431A", "C2467T", "C2498A", "T2608C", "G2693A", "G2704A", "C2716A", "A2734G", "C2739T", "A2743G", "C2749G", "A2750C", "T2873C", "A2925G", "G3019A", "A3025G", "G3094A", "A3097C", "A3107T", "A3164T", "G3166A", "G3168A", "T3172C", "T3256C", "A3279G", "C3331T", "A3463C", "G3467A", "T3469A", "A3490G", "C3508T", "G3523A", "A3706G", "T3746C", "G3770A", "C3908T", "A4096G", "A4182G", "G4267A", "G4268A", "A4455T", "G4495A", "C4569T", "G4581A", "G4693A", "G4694C", "T4703C", "G4719A", "A4774C", "G4848A", "G4862A", "G4864A", "G4881A", "T4910C", "G4923A", "G5013A", "G5014A", "G5075A", "C5091T", "G5099A", "G5100A", "G5104A", "C5250T", "A5278G", "T5293C", "A5360G", "A5362T", "C5445T", "A5496C", "A5556G", "C5567G", "T5568C", "T5576G", "A5655T", "A5689C", "A5704T", "G5711A", "G5794A", "T5796C", "G5864A", "A5866C", "A5869T", "T5871G", "A6020G", "T6154G", "A6158C", "A6164G", "A6192G", "A6195C", "A6197-", "-6201G", "C6202G", "-6205G", "A6206G", "-6207A", "A6208G", "-6211C", "G6226A", "C6278A", "A6335G", "T6337A", "A6339C", "C6340A", "A6368G", "T6382C", "T6457A", "A6465G", "G6481A", "A6526G", "A6535T", "T6545C", "G6547A", "G6575A", "A6581G", "A6617G", "C6631T", "A6684C", "G6693A", "A6736C", "C6766T", "C6785G", "A6792C", "A6806G", "A6807G", "A6819-", "A6820-", "C6822A", "T6823G", "A6825G", "A6826T", "T6827C", "C6830T", "C6831T", "-6833C", "-6834A", "C6938T", "A6944G", "A6950-", "C6951-", "-6959A", "-6960A", "-6961T", "-6962A", "-6963A", "-6964C", "-6965A", "-6966C", "-6967A", "-6968G", "-6969G", "-6970G", "G6977-", "-6994T", "-6997C", "-6999C", "T7014C", "G7054A", "A7113G", "A7148C", "T7150G", "A7312G", "A7313C", "T7370G", "T7374C", "A7420G", "G7426A", "A7428G", "A7440G", "A7519G", "C7532A", "C7605T", "A7633C", "G7640A", "T7642A", "G7658C", "G7668A", "A7688G", "A7700G", "A7701G", "A7741G", "G7777A", "A7790T", "A7798G", "C7926T", "T7932C", "C7939A", "C7940G", "A7962G", "C8019A", "C8026A", "C8033A", "C8065T", "T8103C", "T8227C", "G8255A", "T8281C", "G8329A", "G8330A", "C8331G", "G8446A", "A8455C", "A8468G", "C8488T", "G8490T", "T8501C", "G8529A", "T8583C", "A8587G", "T8594C", "G8595A", "A8617G", "G8619A", "A8622G", "T8646C", "A8656G", "G8666C", "A8701T", "T8711C", "A8750C", "A8777G", "G8885A", "A8893G", "A8901G", "G8902C", "A8905C", "A8906G", "C8921T", "T8939C", "A8947T", "T8949C", "A8954G", "G8955A", "C8967T", "T8974C", "C9017T", "G9026A", "T9029A", "-9033G"], "INT": ["K136R", "V165I", "Y227F", "A265V", "R269K"], "RT-p51": ["L135I", "A200T", "Y215F", "D218E", "K219Q", "K277R", "Q334H", "T338S", "M357L", "R358K", "K395R"], "RT-p66": ["L135I", "A200T", "Y215F", "D218E", "K219Q", "K277R", "Q334H", "T338S", "M357L", "R358K", "K395R", "V458I", "V559I"], "gp120": ["M3T", "E4N", "M56V", "N102H", "-112T", "-113V", "-114L", "Q142K", "N161G", "N162T", "T172A", "N201K", "K204R", "D241N", "I243V", "I255V", "K277T", "S280N", "H311D", "K313T", "K318G", "S323R", "Q324L", "-326H", "N364D", "D365-", "T366-", "-381G", "-382T", "-383D", "I387T", "N420S", "N432Q"], "gp41": ["M4L", "S23A", "M24T", "N42S", "K46R", "Q77K", "N101I", "D113K", "E119Q", "R122K", "N133G", "D163S", "T208I", "L210P", "P213A", "E220G", "T239N", "F241L", "L244I", "V267A", "V318I", "A322V", "A343S"], "nef": ["R35Q", "E38A", "A49V", "A50S", "D63N", "Y81H", "K82R", "V85I", "K92R", "E93K", "K94E", "Y102H", "K105R", "E108D", "Y120F", "K184R", "S187A", "K188T", "Y202F", "Y203H", "D205N"], "p1": ["H9Y"], "p17": ["K30Q", "G49S", "E62G", "Q65H", "F79Y", "V82I", "N124D", "S125N"], "p2": ["S5N"], "p24": ["L15I", "S44A", "G225S", "V230I"], "p6": ["P5L", "D32N", "A39T"], "pro": ["L10V", "I13V", "V15I", "D30N", "K55R", "D60E", "N88D"], "rev": ["K14R", "L18A", "F21V", "P31S", "D57E", "L60I", "T62N", "L73F"], "tat": ["T64S", "V67G", "P73S", "S75P", "P77Q", "K85E"], "vif": ["R36N", "E45K", "E63A", "E88K", "R93K", "D99N", "D113N", "G143K", "D172N", "R173K"], "vpr": ["T49I", "Q86L"], "vpu": ["I28L", "I33L", "R35K", "A63T"]}, "labels": {"aa": "INT: K136R, V165I, Y227F, A265V, R269K; RT-p51: L135I, A200T, Y215F, D218E, K219Q, K277R, Q334H, T338S, M357L, R358K, K395R; RT-p66: L135I, A200T, Y215F, D218E, K219Q, K277R, Q334H, T338S, M357L, R358K, K395R, V458I, V559I; gp120: M3T, E4N, M56V, N102H, -112T, -113V, -114L, Q142K, N161G, N162T, T172A, N201K, K204R, D241N, I243V, I255V, K277T, S280N, H311D, K313T, K318G, S323R, Q324L, -326H, N364D, D365-, T366-, -381G, -382T, -383D, I387T, N420S, N432Q; gp41: M4L, S23A, M24T, N42S, K46R, Q77K, N101I, D113K, E119Q, R122K, N133G, D163S, T208I, L210P, P213A, E220G, T239N, F241L, L244I, V267A, V318I, A322V, A343S; nef: R35Q, E38A, A49V, A50S, D63N, Y81H, K82R, V85I, K92R, E93K, K94E, Y102H, K105R, E108D, Y120F, K184R, S187A, K188T, Y202F, Y203H, D205N; p1: H9Y; p17: K30Q, G49S, E62G, Q65H, F79Y, V82I, N124D, S125N; p2: S5N; p24: L15I, S44A, G225S, V230I; p6: P5L, D32N, A39T; pro: L10V, I13V, V15I, D30N, K55R, D60E, N88D; rev: K14R, L18A, F21V, P31S, D57E, L60I, T62N, L73F; tat: T64S, V67G, P73S, S75P, P77Q, K85E; vif: R36N, E45K, E63A, E88K, R93K, D99N, D113N, G143K, D172N, R173K; vpr: T49I, Q86L; vpu: I28L, I33L, R35K, A63T"}}}, {"name": "EU735540", "node_attrs": {"div": 0.15119, "accession": "EU735540", "clade_membership": {"value": "CRF40_BF1"}, "country": {"value": "BR"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04BRSQ46"}, "LANL_subtype": {"value": "CRF40_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A50T", "G99C", "A152C", "G361A", "G407A", "A424G", "A548G", "A562G", "A585G", "C586T", "G615A", "T635C", "T636C", "C641A", "G644A", "G712A", "C713G", "A714G", "A715T", "G716C", "T728C", "A1089G", "C1103T", "C1118T", "C1245T", "A1442G", "G1498A", "G1588A", "A1657C", "G1664A", "T1682C", "G1727A", "C1749T", "G1757C", "A1774G", "C1833A", "T1837C", "G1846A", "C1981A", "A1993T", "T2257C", "A2294G", "G2304A", "T2338C", "T2602C", "T2627A", "A2641G", "A2662G", "G2714A", "A2726C", "T2738A", "G2974A", "G3058A", "A3080G", "A3096T", "C3178T", "A3192G", "A3214G", "C3252T", "C3275T", "A3280G", "C3399T", "A3409G", "T3466C", "G3520A", "T3541A", "C3542T", "A3637G", "T3644A", "G3667A", "A3684G", "A3715G", "A3718G", "G3755A", "C3756A", "A3814G", "C3908G", "A3923G", "A3979G", "A4060G", "A4076C", "C4428T", "A4683G", "C4771A", "T4772G", "G4773A", "T4907C", "G5030A", "T5043A", "G5137A", "A5146C", "C5221T", "A5226G", "A5272G", "T5313C", "A5385G", "G5403A", "G5412A", "T5471A", "G5482A", "T5483A", "A5535G", "C5563G", "C5581G", "G5599A", "C5654G", "A5655G", "A5659C", "T5707G", "G5746A", "T5778C", "A5787G", "A5856G", "G5858A", "C5862T", "A5865G", "A5867C", "G5939A", "C6010T", "A6022G", "A6065G", "C6083A", "G6167A", "A6186G", "A6189C", "C6190T", "A6191C", "C6193A", "-6198G", "-6201C", "G6203A", "-6205C", "-6207C", "A6208T", "A6209C", "-6211G", "A6214G", "A6215G", "C6216A", "T6325C", "G6329A", "T6334C", "C6340T", "G6392A", "G6458A", "G6475A", "C6496T", "A6502C", "A6520G", "T6694C", "G6725A", "C6758T", "A6799C", "A6806-", "G6809A", "C6810G", "A6811C", "G6812A", "A6813G", "T6815G", "A6817T", "-6821G", "T6823A", "C6824T", "A6825C", "A6850C", "A6855C", "C6874T", "-6947G", "-6948A", "-6949C", "-6952A", "-6978A", "-6979A", "-6980C", "-6981T", "-6982G", "-6983G", "-6984T", "-6985T", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "-6991C", "-6994A", "-6997A", "-6999A", "A7005G", "A7069C", "A7085G", "A7095G", "C7124A", "A7152C", "A7154G", "A7161C", "T7162C", "A7216G", "A7239G", "G7256T", "G7269A", "G7309A", "A7375G", "G7378A", "G7501A", "A7542G", "A7570G", "C7605A", "T7630A", "G7631A", "G7660A", "C7702T", "G7735A", "C7775T", "G7782A", "G7807T", "G7915A", "A7988C", "A7996C", "G7997A", "A8008C", "A8023G", "G8030C", "C8106T", "G8185A", "G8212A", "A8219G", "C8238G", "T8257C", "T8268C", "A8273G", "G8274T", "C8320G", "T8321C", "A8323T", "A8364T", "G8372A", "G8398A", "A8458G", "C8491G", "A8537C", "G8561A", "C8590G", "C8606T", "A8653G", "A8662G", "A8739C", "T8740C", "A8746T", "G8795A", "T8832C", "A8874G", "A8875G", "C8948T", "C9012T", "T9068C"], "INT": ["L45V", "M50V", "I101L", "K136Q", "T218I"], "RT-p51": ["N67D", "R70K", "L178I", "E207N", "K211Q", "Y215T", "I329V", "Q334L", "K366R", "T386I", "A435V"], "RT-p66": ["N67D", "R70K", "L178I", "E207N", "K211Q", "Y215T", "I329V", "Q334L", "K366R", "T386I", "A435V", "H483Y", "L517I", "K530R", "A554N"], "gp120": ["N1S", "A2T", "E4G", "N5Q", "W6L", "D29N", "N71D", "H77N", "A105T", "F106L", "-107K", "N108E", "D159N", "N161S", "V180I", "D202N", "A291T", "D294E", "H302Y", "K315N", "K318-", "N327-", "K332N", "N334T", "-375E", "-376L", "-377V", "-381E", "-382N", "-383N", "D384G", "I411V", "N414S", "L424I", "N433T", "N434D", "N436T", "K462R", "V468L", "R472K"], "gp41": ["Q80R", "D109E", "D110K", "G129S", "S160N", "D163T", "R231S", "D232N", "A243P", "A268V", "T306A", "A312G", "R324V"], "nef": ["S8C", "R19K", "K39R", "A50G", "E65D", "A83G", "K104R", "Q107R", "I133P", "Y135F", "K178G"], "p1": ["H9S"], "p17": ["S9N", "K30R", "K76R", "T84V", "V94I", "D102E", "N124T", "S126K", "K127V"], "p24": ["S120G"], "p6": ["P23S", "D32G", "Q52K"], "p7": ["R11K", "R41K"], "pro": ["T12K", "D61E", "E65D"], "rev": ["D7G", "E47A", "R50Q", "K54Q", "I59V", "S61T", "G113R"], "tat": ["F32Y", "V36N", "Q63E", "L69V"], "vif": ["R33G", "A62E", "E63K", "L153I", "R184K", "H187P"], "vpr": ["N41S", "I70T", "S94G"], "vpu": ["A16G", "I18L", "L34V", "A47T"]}, "labels": {"aa": "INT: L45V, M50V, I101L, K136Q, T218I; RT-p51: N67D, R70K, L178I, E207N, K211Q, Y215T, I329V, Q334L, K366R, T386I, A435V; RT-p66: N67D, R70K, L178I, E207N, K211Q, Y215T, I329V, Q334L, K366R, T386I, A435V, H483Y, L517I, K530R, A554N; gp120: N1S, A2T, E4G, N5Q, W6L, D29N, N71D, H77N, A105T, F106L, -107K, N108E, D159N, N161S, V180I, D202N, A291T, D294E, H302Y, K315N, K318-, N327-, K332N, N334T, -375E, -376L, -377V, -381E, -382N, -383N, D384G, I411V, N414S, L424I, N433T, N434D, N436T, K462R, V468L, R472K; gp41: Q80R, D109E, D110K, G129S, S160N, D163T, R231S, D232N, A243P, A268V, T306A, A312G, R324V; nef: S8C, R19K, K39R, A50G, E65D, A83G, K104R, Q107R, I133P, Y135F, K178G; p1: H9S; p17: S9N, K30R, K76R, T84V, V94I, D102E, N124T, S126K, K127V; p24: S120G; p6: P23S, D32G, Q52K; p7: R11K, R41K; pro: T12K, D61E, E65D; rev: D7G, E47A, R50Q, K54Q, I59V, S61T, G113R; tat: F32Y, V36N, Q63E, L69V; vif: R33G, A62E, E63K, L153I, R184K, H187P; vpr: N41S, I70T, S94G; vpu: A16G, I18L, L34V, A47T"}}}]}]}]}, {"name": "NODE_0000182", "node_attrs": {"div": 0.09998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C96-", "A97-", "A227C", "G614T", "-714C", "C774A", "G2693A", "G3010A", "G3259A", "G3775A", "A4717T", "A4857C", "A4860G", "G4878A", "A4888G", "A4892G", "A4904G", "G5558A", "T5964C", "A6020G", "G6130A", "G6133A", "T6163C", "-6173A", "-6174A", "C6181T", "A6195G", "-6198G", "C6199T", "-6201G", "T6210-", "C6221-", 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"-6986A", "-6987A", "-6988T", "-6989A", "-6991C", "-6992A", "C7006-", "T7009-", "T7015A", "T7024C", "C7064A", "G7065A", "G7079C", "T7087C", "G7088A", "C7089A", "A7094C", "C7096A", "C7101G", "C7102A", "A7106T", "A7107C", "C7108A", "A7126G", "G7132A", "T7153C", "T7156C", "T7165C", "G7183A", "A7197G", "G7269A", "C7433T", "A7450G", "G7471A", "T7489C", "A7492G", "C7553A", "A7590C", "A7688G", "G7691T", "G7701C", "G7720A", "C7775T", "G7915A", "A7918G", "A8009C", "A8018G", "A8537G", "T8546C", "G8796A", "C8835T", "C8843T", "A8852G", "A8858G", "T8867C", "C8873G", "G8885A", "C8966T"], "INT": ["N17S"], "RT-p51": ["A200T"], "RT-p66": ["A200T"], "gp120": ["V37A", "-110T", "-111N", "-112T", "-113N", "-114S", "-115S", "A125E", "I126M", "Q127K", "M133I", "E136S", "V137I", "Q141-", "V144E", "H145Y", "I153V", "N157D", "N161T", "N167S", "T172V", "W182F", "D183E", "Y195F", "K224R", "D241E", "I243V", "Q247E", "I249F", "H259Q", "Q265E", "K300Q", "V305I", "Q309K", "V317I", "K318A", "-319K", "K322R", "S323E", "K332V", "S335Q", "L341P", "T344V", "R351G", "S360T", "G361Q", "D365S", "-367W", "R404K", "A409P", "A412S", "N414Q", "T416R", "N418S", "-436E", "K448R", "R472K"], "gp41": ["M4I", "S101T", "N239D"], "nef": ["E176P", "D177E", "K182V"], "p17": ["E93D"], "p2": ["T10-", "-12T"], "p24": ["L15I"], "rev": ["A15T", "E57G"], "vif": ["Y44F", "R92G", "S95R", "V98I", "L109I", "N134D"]}, "labels": {"aa": "INT: N17S; RT-p51: A200T; RT-p66: A200T; gp120: V37A, -110T, -111N, -112T, -113N, -114S, -115S, A125E, I126M, Q127K, M133I, E136S, V137I, Q141-, V144E, H145Y, I153V, N157D, N161T, N167S, T172V, W182F, D183E, Y195F, K224R, D241E, I243V, Q247E, I249F, H259Q, Q265E, K300Q, V305I, Q309K, V317I, K318A, -319K, K322R, S323E, K332V, S335Q, L341P, T344V, R351G, S360T, G361Q, D365S, -367W, R404K, A409P, A412S, N414Q, T416R, N418S, -436E, K448R, R472K; gp41: M4I, S101T, N239D; nef: E176P, D177E, K182V; p17: E93D; p2: T10-, -12T; p24: L15I; rev: A15T, E57G; vif: Y44F, R92G, S95R, V98I, L109I, N134D"}}, "children": [{"name": "NODE_0000183", "node_attrs": {"div": 0.11243, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T22-", "C23-", "T24-", "G25-", "A26-", "G27-", "C28-", "C29-", "T30-", "G31-", "G32-", "G33-", "A34-", "G35-", "T37-", "C38-", "T39-", "T41-", "T45-", "A46-", "A47-", "A54C", "C57A", "G62A", "A66G", "G68-", "C69-", "C70-", "T71-", "C72-", "A73-", "A74-", "T75-", "A76-", "A77-", "A78-", "G79-", "C80-", "T81-", "T82-", "G83-", "C84-", "C85-", "G167A", "G265A", "A697G", "C747A", "A1277G", "A1279G", "T1421G", "C1444-", "A1445-", "A1446-", "A1450-", "T1451-", "C1453-", "A1454-", "T1457-", "G1476A", "A1543G", "G1673A", "G1709A", "A1828G", "A1918G", "A2026G", "C2063A", "C2083T", "C2098A", "A2131G", "G2224A", "T2383C", "A2524G", "G2683A", "A2818G", "A2925G", "A3214G", "A3224C", "G3431T", "T3445C", "T3449A", "A3511C", "A3524G", "T3544G", "G3631A", "G3796A", "A3814G", "A3835G", "G4268A", "A4549G", "G4555A", "G4695A", "C4726G", "T4727G", "A4737G", 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"R236P", "L244I", "D247V", "A268T", "L340F"], "nef": ["D54A", "A83G", "E108D", "E152K"], "p17": ["D121G"], "p2": ["T8N", "N9T", "A11-"], "p6": ["S24P", "D32-", "*50W"], "p7": ["K26R"], "pro": ["L89M"], "rev": ["T62N", "S86N", "A108T"], "vif": ["G37R", "T47R", "I51V", "E61K", "K91Q", "K167T", "R184K"], "vpr": ["Y45H", "R85Q", "Q86R", "S94G"], "vpu": ["L7A", "S62A", "V65A", "W77-"]}, "labels": {"aa": "INT: V165I, S283G; RT-p51: K277R, T377L; RT-p66: K277R, A446S, T477A, H483Q; gp120: -121M, R138K, -141V, Q142K, D159-, T255V, I281M, D294E, A318V, E401G, S412K; gp41: S165T, R236P, L244I, D247V, A268T, L340F; nef: D54A, A83G, E108D, E152K; p17: D121G; p2: T8N, N9T, A11-; p6: S24P, D32-, *50W; p7: K26R; pro: L89M; rev: T62N, S86N, A108T; vif: G37R, T47R, I51V, E61K, K91Q, K167T, R184K; vpr: Y45H, R85Q, Q86R, S94G; vpu: L7A, S62A, V65A, W77-"}}, "children": [{"name": "results/subtype_trees/CRF70_BF1.nwk", "node_attrs": {"div": 0.13602, "clade_membership": {"value": "CRF70_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G119T", "A256-", "-305A", "T396C", "A424G", "G677A", "C749G", "G810A", "T978G", "T992G", "G1019A", "G1101A", "C1456-", "-1458A", "-1459C", "-1460C", "A1968G", "G1972A", "T2080C", "A2344G", "A2350G", "C2452T", "C2500T", "T2602G", "G2842A", "G2926A", "C2975A", "T3292A", "C3500A", "A3670G", "G3755A", "A3772C", "A3825G", "G3989A", "G4294A", "C4786T", "T4967A", "T4976C", "T4988A", "T5003C", "G5359A", "A5432G", "C5567A", "C5602T", "C5688A", "A5718G", "G5866T", "C5964T", "G6167A", "-6170G", "-6171T", "-6172G", "-6175T", "G6203A", "-6204C", "-6205C", "A6208G", "-6210G", "-6211T", "-6212A", "-6213G", "-6214C", "A6230C", "G6232A", "C6293A", "A6330-", "G6725A", "T6745C", "A6841G", "A6848G", "C6857G", "A6858C", "-6956A", "-6957T", "-6980G", "-6981A", "-6982G", "-6984C", "-6985A", "A6989G", "-6990A", "-7005A", "-7006C", "A7313C", "T7433C", "A7604G", "C7701A", "A7971G", "G8018C", "G8245A", "T8277C", "A8288T", "G8402A", "A8425T", "T8440C", "T8444G", "A8469C", "G8476T", "G8479A", "C8480T", "C8741T", "G8795T", "A8805G", "G8880A", "T8881C"], "INT": ["V72I"], "RT-p51": ["D169E", "D248E", "P294T", "D399E"], "RT-p66": ["D169E", "D248E", "P294T", "D399E", "L469M", "A554S"], "gp120": ["E4D", "A37V", "-107K", "M126L", "S136N", "L147I", "V255I", "A291T", "-326K", "Q361K", "-368N", "-378N", "-380T", "-381E", "G401R", "N433T"], "gp41": ["I4L", "T101A", "T133D", "E223G", "P236T", "D239H", "I329F"], "nef": ["M20L", "D28V", "V33A", "I43L", "S45I", "S46N", "E151D", "K155E", "V180T"], "p17": ["K28R", "K30R"], "p24": ["I6M", "V27I", "L83V", "H87Q", "M96I", "V124I"], "p6": ["G34E"], "pro": ["K57R"], "rev": ["K14Q", "L18I", "A54T", "G57A"], "tat": ["K19R", "Q60P", "T64N"], "vif": ["T67I", "H127Q", "D134E"], "vpu": ["A62E", "M67L", "-74L", "-77G", "V79I"]}, "labels": {"aa": "INT: V72I; RT-p51: D169E, D248E, P294T, D399E; RT-p66: D169E, D248E, P294T, D399E, L469M, A554S; gp120: E4D, A37V, -107K, M126L, S136N, L147I, V255I, A291T, -326K, Q361K, -368N, -378N, -380T, -381E, G401R, N433T; gp41: I4L, T101A, T133D, E223G, P236T, D239H, I329F; nef: M20L, D28V, V33A, I43L, S45I, S46N, E151D, K155E, V180T; p17: K28R, K30R; p24: I6M, V27I, L83V, H87Q, M96I, V124I; p6: G34E; pro: K57R; rev: K14Q, L18I, A54T, G57A; tat: K19R, Q60P, T64N; vif: T67I, H127Q, D134E; vpu: A62E, M67L, -74L, -77G, V79I", "clade": "CRF70_BF1"}}, "children": [{"name": "KU749388", "node_attrs": {"div": 0.18186, "accession": "KU749388", "clade_membership": {"value": "CRF70_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "DE07010BR033"}, "LANL_subtype": {"value": "CRF70_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A16-", "C17-", "C18-", "A19-", "G20-", "A21-", "C40-", "G42-", "G43-", "C44-", "G52A", "C54A", "A57C", "A62G", "G66A", "-68G", "-69C", "-70C", "-71T", "-72C", "-73A", "-74A", "-75T", "-76A", "-77A", "-78A", "-79G", "-80C", "-81T", "-82T", "-83G", "-84C", "-85C", "-86T", "-87T", "-88G", "-89A", "-90G", "-91T", "-92G", "-93C", "-94T", "-95T", "-96C", "-97A", "T119-", "C151T", "T200C", "G215A", "A216G", "A217G", "A305T", "A389G", "A410G", "A418G", "T426C", "A488G", "C516A", "G518A", "A551G", "A571T", "A576C", "C577T", "A585G", "C586T", "G599A", "G607A", "C641G", "A645G", "G697A", "G740A", "T760C", "A959G", "A995G", "A998G", "G1173A", "A1208G", "A1271G", "G1279A", "G1313A", "G1388A", "G1394A", "G1404A", "G1421A", "-1450A", "-1451T", "-1452A", "-1453C", "-1454A", "T1501C", "A1670G", "C1688A", "A1709G", "A1733G", "A1742C", "A1743-", "C1744-", "C1745-", "T1754C", "C1775G", "A1781T", "T1783C", "C1826A", "G1828A", "G1846A", "T1885C", "C1981T", "C1985T", "T1986C", "C1987T", "T1997G", "G1998A", "T1999G", "A2007G", "T2013C", "A2038T", "A2125T", "A2198T", "A2241G", "C2296T", "G2417A", "T2425C", "G2431A", "A2459G", "T2464A", "G2498A", "A2508C", "G2539A", "C2626A", "G2714C", "T2719C", "A2764G", "T2803G", "C2839A", "C2845A", "A2919G", "G2925A", "C2968A", "A2977C", "G3019A", "A3028G", "G3044T", "A3079T", "A3142G", "A3164G", "G3214A", "T3225A", "G3264A", "C3275T", "A3430C", "G3442T", "A3502G", "A3532G", "A3565G", "T3644A", "G3695A", "T3746C", "C3751T", "C3756G", "A3816G", "G3866A", "C3889T", "T4009C", "A4036G", "T4079C", "C4132T", "G4150A", "G4174A", "G4183T", "G4267A", "T4276C", "T4316C", "C4321T", "G4366A", "A4369G", "T4426A", "A4440C", "G4446A", "G4583A", "A4642G", "C4645A", "C4715T", "T4717A", "G4737A", "A4773G", "A4774T", "A4785G", "T4952A", "A4968G", "C4978A", "A5007C", "T5028C", "A5037G", "G5066A", "T5073C", "A5085G", "G5087A", "C5125T", "A5159G", "G5179C", "T5182C", "T5224C", "T5228C", "C5237T", "A5247C", "G5267A", "A5272G", "A5302C", "C5303T", "T5313C", "T5327C", "T5357C", "C5361A", "G5396A", "G5437C", "C5445A", "C5451T", "G5463A", "G5482A", "T5484G", "T5492C", "C5511A", "A5555C", "C5563A", "G5565A", "A5567G", "C5569T", "T5578C", "T5584C", "C5615T", "T5617G", "C5620A", "A5621C", "A5623G", "G5635A", "A5706C", "G5725A", "G5730A", "A5734T", "T5735A", "T5739G", "-5801G", "A5806G", "C5834T", "G5839A", "T5841C", "A5845G", "A5947G", "G5954A", "T5956G", "G6020T", "A6030T", "G6037A", "A6061C", "A6076G", "G6088A", "T6171C", "T6175G", "A6176G", "T6178G", "-6180A", "A6186G", "T6187A", "G6208T", "T6216G", "G6217A", "G6220T", "-6221A", "G6225A", "C6230T", "A6232C", "A6251G", "T6252C", "A6261C", "A6263T", "A6266C", "G6275A", "T6276G", "G6280A", "A6281G", "G6284C", "T6299A", "A6303G", "G6323A", "-6330G", "G6345T", "G6354A", "T6355C", "A6359G", "C6361T", "G6392A", "T6436C", "A6448T", "T6457C", "G6463A", "A6464G", "G6466T", "A6471G", "C6477A", "A6478G", "C6483T", "A6488C", "C6499T", "A6500T", "A6508G", "T6534C", "A6544C", "G6547A", "C6563T", "A6565G", "A6576G", "T6592C", "G6593A", "A6594G", "T6602A", "G6604A", "A6623T", "A6625G", "G6638A", "A6639C", "A6680G", "G6681T", "A6684G", "A6686G", "A6723T", "T6724G", "A6730T", "C6752A", "C6758T", "A6773G", "G6774C", "A6788G", "C6790A", "A6798G", "A6799G", "A6803G", "A6809G", "A6811C", "A6818C", "G6819A", "T6827G", "T6828A", "T6829A", "-6830C", "-6831A", "-6832A", "-6835G", "G6894C", "A6926G", "T6928C", "A6929T", "A6931C", "A6934T", "A6936C", "T6957A", "-6971G", "-6972G", "-6973T", "-6974A", "-6975C", "-6977G", "-6978A", "-6979A", "G6982A", "-6983A", "C6984T", "A6990G", "-6996A", "-6997A", "-6998G", "-6999G", "-7000A", "-7001A", "-7002A", "-7009G", "C7019A", "C7020A", "G7055A", "A7065G", "C7087T", "A7088C", "A7102C", "C7124A", "G7126T", "A7149G", "A7151G", "A7152G", "C7165A", "A7190G", "A7258G", "C7264A", "A7268C", "G7270T", "G7307A", "A7420G", "C7429T", "G7450A", "C7463A", "C7579T", "A7589G", "T7591A", "G7604T", "C7625T", "T7626A", "G7627T", "G7633T", "G7640A", "T7681G", "T7691A", "A7700G", "C7702A", "A7722G", "A7743T", "A7747C", "G7754A", "C7755A", "A7763T", "A7764C", "A7765C", "G7790A", "A7791G", "C7801A", "T7808C", "A7817C", "C7825T", "G7890A", "G7918A", "T7932A", "C7941G", "A7943G", "A8000G", "G8006A", "C8009A", "A8036G", "A8104G", "T8112C", "G8144C", "C8145T", "G8158T", "G8255A", "T8287A", "C8294A", "C8411T", "A8447G", "T8476C", "T8498C", "C8514G", "G8537T", "T8543G", "T8582C", "A8584T", "G8590C", "T8595G", "A8647G", "C8648G", "A8654G", "A8660G", "C8688A", "A8726G", "C8727A", "C8728A", "C8751T", "G8753A", "C8775T", "A8812C", "G8817A", "A8827C", "T8829A", "A8844C", "T8860C", "G8861A", "T8864C", "G8882A", "G8886A", "C8937T", "C8967T", "G8970A", "C9017A", "T9068C", "T9074G", "T9075C", "T9098C", "C9108T", "C9129T", "-9137A"], "INT": ["K14R", "V31I", "T124A", "K136N", "F181L", "N222T", "R224Q", "D270N"], "RT-p51": ["T35S", "K49R", "V108I", "K122E", "D123E", "V135I", "E138A", "A173T", "D177E", "E207Q", "D250E", "K275R", "R277K", "D291E", "V317L", "E328D", "M357V", "L377Q", "R390K"], "RT-p66": ["T35S", "K49R", "V108I", "K122E", "D123E", "V135I", "E138A", "A173T", "D177E", "E207Q", "D250E", "K275R", "R277K", "D291E", "V317L", "E328D", "M357V", "L377Q", "R390K", "E449D", "L452I", "L517I", "A534T"], "gp120": ["D34K", "V56L", "E59V", "K69N", "-106A", "N108E", "-109D", "N111R", "N113T", "-116S", "-117R", "-118D", "M121-", "E122-", "-123K", "G124E", "L126F", "I133A", "N136A", "I137L", "K138Q", "V141R", "K143E", "E144Q", "Y149N", "K150R", "D157N", "-159S", "R164M", "S167N", "N169D", "V180I", "K204D", "N206S", "T208K", "P210L", "K212Q", "T216S", "V227A", "Q230H", "E241G", "E247S", "S250T", "I257L", "E262T", "R276V", "K277R", "S278G", "Y290L", "E294S", "Q300K", "H302Y", "R307A", "N312E", "K315R", "I317V", "K319A", "R322Q", "F325E", "K326Q", "N327F", "-328N", "Q335A", "S347T", "N358D", "T359S", "K361P", "N369G", "-374T", "-375E", "-376E", "-377I", "-379G", "-382G", "-383N", "P389K", "K404R", "K412Q", "R416S", "L424I", "N432S", "T433G", "E436K", "N446D", "K472H"], "gp41": ["V2I", "L54M", "N96A", "A101S", "L108Y", "D113N", "N126K", "D129G", "L130I", "D133E", "N140S", "Q147L", "E148D", "A151K", "K154S", "D163S", "N166K", "W169R", "K172Q", "R196K", "L210H", "P213R", "R214G", "R233G", "G235R", "I245V", "I270T", "A281L", "W285C", "V318I", "H331N", "F340L"], "nef": ["L20I", "I45T", "L58V", "Y81F", "G83A", "Y102W", "H116N", "P129K", "N157T", "G159R", "N162T", "C163S", "M168L", "M173T", "V182M", "H199Y"], "p17": ["L61I", "Y79F", "T81L", "T84V", "D102E", "I104V", "G121D"], "p24": ["M10T", "V148I", "G225S"], "p6": ["N3K", "T22P", "P23S", "P25K", "-26Q", "K27E", "E29-", "Q30-", "K31-", "E33K", "L35E", "Y36G", "W50*"], "p7": ["I12T"], "pro": ["L10I", "L63S", "C67E", "K70R", "I72T"], "rev": ["R17K", "I18V", "E32G", "Q51R", "R53Q", "T54D", "H63R", "N86D", "S99T", "V104L"], "tat": ["R7K", "A21P", "K24N", "V36M", "I39T", "Q63K", "N64S", "H65Y", "S68P", "S70P", "S75T", "R78G"], "vif": ["N19S", "T20K", "F44Y", "V51I", "G60E", "K63V", "I67V", "N122K", "I128V", "P131H", "K141Q", "T151A", "T167A", "T180I"], "vpr": ["T19A", "E25D", "H45Y", "E48A", "A55T", "Q66H", "I70T"], "vpu": ["P3L", "L4V", "Q5T", "I6V", "A7V", "V10I", "T24S", "D40N", "I43Y", "D44E", "E60D", "L61A", "A63E", "E66A", "-70E", "-71V", "-72G", "A75V", "P76L", "D78N", "N80D", "D81N"]}, "labels": {"aa": "INT: K14R, V31I, T124A, K136N, F181L, N222T, R224Q, D270N; RT-p51: T35S, K49R, V108I, K122E, D123E, V135I, E138A, A173T, D177E, E207Q, D250E, K275R, R277K, D291E, V317L, E328D, M357V, L377Q, R390K; RT-p66: T35S, K49R, V108I, K122E, D123E, V135I, E138A, A173T, D177E, E207Q, D250E, K275R, R277K, D291E, V317L, E328D, M357V, L377Q, R390K, E449D, L452I, L517I, A534T; gp120: D34K, V56L, E59V, K69N, -106A, N108E, -109D, N111R, N113T, -116S, -117R, -118D, M121-, E122-, -123K, G124E, L126F, I133A, N136A, I137L, K138Q, V141R, K143E, E144Q, Y149N, K150R, D157N, -159S, R164M, S167N, N169D, V180I, K204D, N206S, T208K, P210L, K212Q, T216S, V227A, Q230H, E241G, E247S, S250T, I257L, E262T, R276V, K277R, S278G, Y290L, E294S, Q300K, H302Y, R307A, N312E, K315R, I317V, K319A, R322Q, F325E, K326Q, N327F, -328N, Q335A, S347T, N358D, T359S, K361P, N369G, -374T, -375E, -376E, -377I, -379G, -382G, -383N, P389K, K404R, K412Q, R416S, L424I, N432S, T433G, E436K, N446D, K472H; gp41: V2I, L54M, N96A, A101S, L108Y, D113N, N126K, D129G, L130I, D133E, N140S, Q147L, E148D, A151K, K154S, D163S, N166K, W169R, K172Q, R196K, L210H, P213R, R214G, R233G, G235R, I245V, I270T, A281L, W285C, V318I, H331N, F340L; nef: L20I, I45T, L58V, Y81F, G83A, Y102W, H116N, P129K, N157T, G159R, N162T, C163S, M168L, M173T, V182M, H199Y; p17: L61I, Y79F, T81L, T84V, D102E, I104V, G121D; p24: M10T, V148I, G225S; p6: N3K, T22P, P23S, P25K, -26Q, K27E, E29-, Q30-, K31-, E33K, L35E, Y36G, W50*; p7: I12T; pro: L10I, L63S, C67E, K70R, I72T; rev: R17K, I18V, E32G, Q51R, R53Q, T54D, H63R, N86D, S99T, V104L; tat: R7K, A21P, K24N, V36M, I39T, Q63K, N64S, H65Y, S68P, S70P, S75T, R78G; vif: N19S, T20K, F44Y, V51I, G60E, K63V, I67V, N122K, I128V, P131H, K141Q, T151A, T167A, T180I; vpr: T19A, E25D, H45Y, E48A, A55T, Q66H, I70T; vpu: P3L, L4V, Q5T, I6V, A7V, V10I, T24S, D40N, I43Y, D44E, E60D, L61A, A63E, E66A, -70E, -71V, -72G, A75V, P76L, D78N, N80D, D81N"}}}, {"name": "CRF70_BF1_NODE_0000001", "node_attrs": {"div": 0.1384, "clade_membership": {"value": "CRF70_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A161T", "G717A", "A980G", "G1346A", "G1354A", "G1487A", "C1490T", "C1535T", "C1541T", "G1725A", "G1736A", "G1794A", "T2071C", "T2236C", "A2761G", "G2947A", "G3016A", "G3154A", "G3398A", "A3454G", "T3469C", "C3475T", "A3562G", "T3754C", "T3793A", "G3891A", "A3961G", "A4076C", "T4135C", "G4145A", "G4475A", "C4803A", "G4892T", "T5171C", "C5221T", "G5363A", "G5382A", "T5471A", "T5487C", "G5557A", "C5651T", "G5790A", "G6121A", "C6291G", "C6935A", "-6961T", "-6963G", "-6964T", "A7090G", "A7155C", "C7170T", "C7590A", "G7689A", "C7699T", "T7703C", "G7885A", "C8005A", "G8008A", "C8065T", "C8293T", "A8363G", "A8400C", "A8461G", "T8477A", "T8558C", "A8576C"], "INT": ["D6E", "S39N", "I101L", "V234I"], "gp120": ["A146G", "N434T", "T439I"], "nef": ["H40R", "V85L"], "p17": ["K91R"], "p6": ["G16R", "-32K", "A39T"], "rev": ["L73F"], "tat": ["F32Y"], "vif": ["H73N"], "vpr": ["A93T"], "vpu": ["A15V"]}, "labels": {"aa": "INT: D6E, S39N, I101L, V234I; gp120: A146G, N434T, T439I; nef: H40R, V85L; p17: K91R; p6: G16R, -32K, A39T; rev: L73F; tat: F32Y; vif: H73N; vpr: A93T; vpu: A15V"}}, "children": [{"name": "KJ849775", "node_attrs": {"div": 0.17948, "accession": "KJ849775", "clade_membership": {"value": "CRF70_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE087"}, "LANL_subtype": {"value": "CRF70_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T100C", "T117G", "T153C", "C227A", "A239G", "-256A", "A418G", "A425G", "T426C", "T476C", "A485T", "T534G", "C537A", "T539A", "C540A", "C558A", "A563G", "G608A", "T614G", "C641T", "A676C", "C684A", "A699G", "G703A", "A704C", "T718C", "C719T", "C722T", "G771C", "C830T", "T861G", "A866G", "A923T", "C926T", "C964T", "C974T", "A998G", "C1244T", "A1271G", "T1335C", "A1349G", "G1353C", "-1450A", "-1451T", "-1452A", "-1453C", "-1454A", "A1475G", "A1614T", "T1646C", "G1697A", "A1733G", "T1741C", "G1773A", "C1775A", "G1780A", "A1781G", "A1849G", "C1853T", "A1857G", "C1903T", "C1913G", "G1918A", "G1942A", "T1986A", "C1987A", "C2005T", "G2026A", "G2131A", "C2199A", "A2293G", "A2311G", "T2323C", "C2326T", "T2335G", "A2399C", "A2404G", "A2406G", "G2407A", "T2464G", "G2470A", "T2479G", "A2489G", "G2509A", "A2551G", "G2580A", "T2608C", "T2620C", "C2626A", "A2722C", "A2734T", "G2818A", "A2827C", "C2828T", "A2829C", "A2830G", "T2831C", "C2839A", "T2863C", "C2885T", "A2887G", "A2896C", "T2917C", "A2937G", "T2944C", "G2956A", "G2974A", "T3059G", "A3064G", "A3079C", "T3112C", "T3132A", "A3199G", "T3240C", "C3394T", "C3399T", "A3449C", "A3502G", "G3508A", "G3520A", "A3630G", "T3644A", "C3665G", "G3770A", "A3796G", "A3868G", "A4036G", "G4057A", "T4075C", "C4123T", "G4495A", "A4577C", "A4677G", "A4697G", "T4702C", "G4727A", "G4764A", "G4766T", "A4767G", "C4771A", "A4845G", "T4868C", "G4870A", "G4888A", "C4898T", "A4911C", "A4968G", "A5037G", "A5042T", "T5062G", "T5072C", "G5087A", "A5119G", "A5128G", "G5140A", "A5186C", "G5267A", "T5292C", "T5415C", "T5439A", "A5446G", "A5447C", "A5453T", "G5482A", "T5483A", "T5484C", "A5537C", "A5555C", "T5576G", "T5577C", "A5587G", "G5599C", "A5613C", "T5627C", "T5669C", "T5677A", "T5731A", "G5747T", "G5781A", "G5791T", "-5801T", "A5805G", "T5807G", "C5827G", "T5828A", "T5831C", "G5836T", "G5839A", "A5848G", "A5856G", "A5865C", "T5866A", "C5869T", "T5890C", "C5917T", "A5965G", "G6023A", "T6024G", "A6030C", "A6031C", "C6052T", "A6061G", "A6076C", "T6101C", "C6153T", "A6176G", "A6177T", "G6179A", "-6180C", "T6181C", "A6188G", "C6189T", "C6190G", "C6192A", "A6194G", "G6195C", "G6198C", "T6199C", "G6201T", "C6202T", "C6204A", "C6205T", "A6206G", "G6210A", "G6220-", "A6222-", "A6273T", "A6278-", "A6279-", "G6280-", "A6285G", "T6299A", "T6315C", "A6320C", "-6330C", "T6351G", "T6382C", "A6394G", "C6446T", "G6466A", "C6483A", "T6523C", "T6541C", "T6562C", "A6578G", "C6595A", "G6605A", "T6618C", "C6619T", "G6631T", "T6652C", "A6664G", "C6670T", "G6681T", "A6683C", "C6712G", "A6734C", "T6735A", "C6790T", "A6791G", "A6799G", "C6800G", "T6804C", "C6810A", "T6829C", "-6830A", "-6831G", "-6832G", "A6833G", "-6835T", "T6838C", "A6855G", "T6856C", "G6857A", "C6858G", "T6885A", "A6891T", "A6932T", "G6940A", "T6952G", "G6954A", "G6955T", "A6956G", "-6959G", "-6960A", "-6962A", "T6976-", "A6981G", "-6983C", "-6996A", "-6997A", "-6998G", "-6999A", "-7000C", "-7001A", "-7002C", "C7006T", "C7008G", "-7009T", "C7018G", "A7040G", "G7056A", "G7072A", "C7094A", "A7095T", "T7150C", "A7152C", "C7156T", "C7159T", "G7162C", "G7168A", "C7171T", "C7174T", "T7180A", "G7276A", "A7312G", "A7315G", "A7318G", "A7322C", "A7373C", "C7429T", "G7440A", "A7527T", "G7549A", "A7561C", "C7576T", "C7625A", "A7641G", "T7642G", "C7690A", "T7691A", "G7712C", "T7751C", "A7782C", "C7792T", "A7796T", "T7806C", "A7903G", "C7906T", "C7921G", "C7941A", "G8006A", "G8007C", "C8009A", "C8026A", "C8145T", "T8164C", "C8165A", "T8321G", "T8348G", "A8405G", "T8425C", "A8447G", "A8457G", "A8459C", "A8475G", "G8490A", "C8510T", "G8531T", "G8534C", "T8543C", "A8570G", "A8571C", "C8581A", "G8588A", "T8595C", "A8597T", "A8643G", "C8652A", "A8653C", "T8666A", "C8684T", "T8711C", "T8740C", "A8851T", "C8868T", "A8874G", "G8888A", "A8893G", "C8907T", "T8966C", "T9014C"], "INT": ["I268L"], "RT-p51": ["T35K", "K102Q", "K104R", "D123E", "I132V", "C162Y", "A173T", "D177E", "Q245S", "K281R", "S322A", "E328D", "F346Y", "I382T", "A435I"], "RT-p66": ["T35K", "K102Q", "K104R", "D123E", "I132V", "C162Y", "A173T", "D177E", "Q245S", "K281R", "S322A", "E328D", "F346Y", "I382T", "A435I", "K512R", "L517I", "Q524E", "S554T", "V559I"], "gp120": ["N1S", "D4A", "N5G", "V57R", "E59A", "E74D", "T100I", "-106V", "K107N", "N108V", "-109T", "T112V", "S114A", "S115T", "-116I", "-117N", "-118G", "-119N", "-120S", "N136D", "K140M", "K142-", "E144G", "Y149N", "V154A", "I156L", "-159T", "I166R", "P210Q", "I242V", "D251N", "I255T", "Q259H", "R276I", "K277Q", "E294Q", "T313A", "Q316E", "I317T", "K326R", "N327D", "-328N", "N334S", "Q335R", "V344E", "H346L", "T360S", "W367Y", "N369S", "-370S", "-371Q", "-372L", "-373V", "-374D", "-375S", "-376G", "-377P", "-379D", "-382N", "-383D", "T385S", "I396V", "R401E", "M406I", "Q414I", "E436N"], "gp41": ["M7L", "I24L", "R46K", "Y75F", "L108M", "D110E", "D113G", "D129E", "L130I", "D133N", "E137Q", "N160T", "T165S", "L168P", "F206L", "P213Q", "G235T", "F241L", "A281V", "L288I", "F340V"], "nef": ["V28A", "K39D", "I45V", "A50T", "E63D", "E64D", "T80N", "I101V", "Q104T", "D108E", "I133T", "Q170L", "P176S", "R178G", "K184R"], "p17": ["S67A", "L68I", "Q69K", "L75I", "D93E", "K114T", "Q117K", "T122A", "G123D", "V128T"], "p24": ["A14P", "S44A", "A78V", "N183S", "G208Q"], "p6": ["I21T", "P24S"], "p7": ["T50S"], "pro": ["K20R", "P39A", "L63Q"], "rev": ["S8R", "F21A", "R53N", "T54N", "L60I", "S106H"], "tat": ["K24A", "Y26F", "V36N", "Q54P", "D61N", "V67G", "K71E"], "vif": ["I31V", "F39S", "G60N", "K61E", "A62D", "I87V", "R95K", "G101D", "I109L", "I128V", "T151A", "I159R", "Q178R", "K181R", "G185E"], "vpr": ["N28H", "A55T", "I63T"], "vpu": ["Q2H", "V21A", "L42I", "R47I", "E62S", "A65V", "L67R", "L74D", "G77W", "D78N"]}, "labels": {"aa": "INT: I268L; RT-p51: T35K, K102Q, K104R, D123E, I132V, C162Y, A173T, D177E, Q245S, K281R, S322A, E328D, F346Y, I382T, A435I; RT-p66: T35K, K102Q, K104R, D123E, I132V, C162Y, A173T, D177E, Q245S, K281R, S322A, E328D, F346Y, I382T, A435I, K512R, L517I, Q524E, S554T, V559I; gp120: N1S, D4A, N5G, V57R, E59A, E74D, T100I, -106V, K107N, N108V, -109T, T112V, S114A, S115T, -116I, -117N, -118G, -119N, -120S, N136D, K140M, K142-, E144G, Y149N, V154A, I156L, -159T, I166R, P210Q, I242V, D251N, I255T, Q259H, R276I, K277Q, E294Q, T313A, Q316E, I317T, K326R, N327D, -328N, N334S, Q335R, V344E, H346L, T360S, W367Y, N369S, -370S, -371Q, -372L, -373V, -374D, -375S, -376G, -377P, -379D, -382N, -383D, T385S, I396V, R401E, M406I, Q414I, E436N; gp41: M7L, I24L, R46K, Y75F, L108M, D110E, D113G, D129E, L130I, D133N, E137Q, N160T, T165S, L168P, F206L, P213Q, G235T, F241L, A281V, L288I, F340V; nef: V28A, K39D, I45V, A50T, E63D, E64D, T80N, I101V, Q104T, D108E, I133T, Q170L, P176S, R178G, K184R; p17: S67A, L68I, Q69K, L75I, D93E, K114T, Q117K, T122A, G123D, V128T; p24: A14P, S44A, A78V, N183S, G208Q; p6: I21T, P24S; p7: T50S; pro: K20R, P39A, L63Q; rev: S8R, F21A, R53N, T54N, L60I, S106H; tat: K24A, Y26F, V36N, Q54P, D61N, V67G, K71E; vif: I31V, F39S, G60N, K61E, A62D, I87V, R95K, G101D, I109L, I128V, T151A, I159R, Q178R, K181R, G185E; vpr: N28H, A55T, I63T; vpu: Q2H, V21A, L42I, R47I, E62S, A65V, L67R, L74D, G77W, D78N"}}}, {"name": "KJ849758", "node_attrs": {"div": 0.17503, "accession": "KJ849758", "clade_membership": {"value": "CRF70_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE004"}, "LANL_subtype": {"value": "CRF70_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G129A", "G166A", "A167G", "G215A", "A216G", "G226C", "C227T", "G278A", "G289A", "G338A", "G354A", "A374G", "A378C", "G401A", "A417C", "A435G", "T473C", "G518A", "G520C", "G546A", "A562G", "A571T", "C641A", "G644A", "A686G", "T718G", "G761A", "G816A", "A866T", "A878C", "C879T", "A880C", "A891G", "C904T", "G908A", "G911A", "G978A", "T979C", "C1008G", "C1013G", "G1021A", "G1031A", "G1047A", "C1060A", "A1079T", "G1109A", "C1118T", "T1166C", "C1175T", "T1182C", "G1184A", "G1197A", "A1242G", "G1249A", "A1250G", "A1259G", "G1277A", "A1278G", "A1289G", "A1339G", "C1362A", "G1368A", "G1388A", "G1394A", "-1444C", "-1445A", "-1446A", "C1447A", "A1448T", "A1449-", "-1455G", "-1456C", "-1457A", "A1494G", "G1527C", "G1530A", "G1543A", "G1552A", "G1568A", "C1571A", "G1588A", "G1593A", "A1600T", "G1638A", "G1671A", "C1679T", "C1680A", "A1742G", "-1746C", "-1747C", "-1748C", "C1751T", "T1752C", "T1754G", "C1755A", "C1756A", "G1778A", "T1783G", "C1853A", "C1865T", "G1912A", "C1981T", "T2013C", "G2027A", "T2086A", "C2105T", "A2113G", "A2210G", "A2224G", "T2443C", "G2530A", "T2542C", "A2612G", "A2629G", "G2665A", "A2693G", "A2764G", "G2837A", "G2872A", "C2941T", "C3006A", "A3010G", "G3058A", "G3127C", "G3217A", "C3224A", "T3225C", "C3232T", "A3258G", "G3264A", "G3307A", "A3385G", "T3433C", "A3449G", "A3490G", "T3541C", "G3643A", "A3718C", "C3756A", "C3772T", "A3787G", "T3850C", "T3967C", "C4015T", "G4051A", "T4085C", "T4126C", "C4129T", "T4144C", "C4146A", "A4148G", "T4153A", "T4165C", "G4174A", "C4195T", "T4216C", "G4267A", "T4316C", "A4544C", "G4696A", "A4697T", "G4735A", "A4765G", "G4766A", "A4773G", "A4775G", "A4781C", "T4820C", "G4865A", "A5005G", "T5047G", "A5069G", "C5086A", "C5125T", "A5159G", "G5167A", "A5187G", "T5203C", "C5213A", "C5214T", "A5248C", "T5311C", "A5372C", "C5384T", "G5396A", "T5439G", "T5448A", "C5530T", "C5551T", "A5556C", "A5558G", "T5584C", "C5614T", "C5620T", "A5621T", "G5626T", "T5627A", "A5628T", "G5629T", "G5673A", "A5720G", "G5725A", "A5784G", "A5787T", "T5788G", "T5789C", "C5792A", "A5793G", "C5795A", "C5797T", "T5799G", "-5801C", "G5802A", "A5804C", "A5806C", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822A", "-5823G", "A5825T", "G5830A", "A5845G", "A5846G", "C5851T", "G5858A", "C5916G", "C5958A", "A6030G", "G6037A", "A6130G", "A6158C", "C6165A", "A6174C", "T6178G", "-6180G", "C6189G", "T6193C", "G6198A", "C6202G", "A6206T", "G6207T", "A6209G", "T6211A", "G6213T", "C6214G", "-6221G", "G6260A", "A6266G", "A6267G", "G6277T", "A6304C", "G6311A", "A6329-", "T6331-", "A6332-", "A6333-", "T6334-", "T6343C", "A6371C", "T6395A", "C6396G", "T6457C", "G6458A", "A6489C", "G6525A", "T6534C", "G6547A", "C6548T", "T6551A", "T6592C", "G6593A", "A6594G", "T6599C", "T6602A", "C6607T", "G6611A", "A6623T", "G6626A", "A6639C", "A6686G", "C6717T", "C6777T", "A6781G", "A6797C", "A6818G", "-6835A", "G6884A", "T6885C", "T6928C", "-6959A", "-6960A", "-6962G", "-6965A", "-6966C", "-6967T", "-6968A", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975C", "-6977A", "-6978A", "-6979A", "-6983T", "A6986G", "T6988C", "C6991-", "A6992-", "C6993-", "T6994-", "G6995-", "A7005G", "-7009A", "G7055A", "A7088C", "G7101A", "C7124A", "G7126A", "C7127A", "A7138G", "A7148G", "A7158C", "A7160G", "G7182C", "A7190G", "G7256A", "G7291A", "C7320T", "G7369A", "C7489T", "G7508A", "A7553C", "C7579T", "G7627A", "G7631A", "G7633T", "G7658C", "A7677G", "C7690T", "A7700G", "G7712A", "C7801A", "C7825T", "G7846A", "G7847A", "T7852G", "G7883A", "A7915G", "C7921T", "C7931T", "T7968C", "C8010A", "C8018A", "A8019C", "C8080A", "A8105G", "T8182C", "C8215T", "A8258G", "A8260G", "T8288G", "C8294A", "A8297G", "A8308G", "G8323C", "T8375G", "C8386A", "T8387G", "C8410A", "T8426C", "A8457C", "C8500A", "G8512T", "G8513T", "A8525C"], "INT": ["T124N", "T125A", "F181L", "I257L"], "RT-p51": ["P4S", "T39A", "I178M", "T200A", "E248N", "A304E", "E344D", "L377T", "K388R", "R390K", "A435T"], "RT-p66": ["P4S", "T39A", "I178M", "T200A", "E248N", "A304E", "E344D", "L377T", "K388R", "R390K", "A435T", "L452V", "M469I", "S554N"], "gp120": ["A2T", "T21S", "E59G", "N102H", "T104N", "N108S", "-109G", "T112S", "N113T", "S115N", "-116R", "-117T", "-118L", "-119G", "-120M", "-123E", "K138G", "K150N", "V153I", "N160-", "I173L", "D202N", "K212T", "R224K", "V227A", "L233I", "E247S", "F249L", "S250T", "A253T", "I257L", "V258I", "E262A", "S278G", "A288V", "K315Q", "K319T", "R322G", "V344T", "N368I", "-370G", "-371T", "-372R", "-382E", "-383S", "K412Q", "R416K", "L424I", "L425I", "N435T", "G443A", "N446D", "V468I"], "gp41": ["A6V", "V69I", "I84L", "D110N", "E119Q", "D125G", "E137K", "N166K", "V182I", "V194I", "L210F", "I222T", "T236Q", "H239T", "T268A", "I319V", "F329V", "H331N", "I332V"], "nef": ["A15E", "T23N", "K39Q", "A53D", "W57F", "Q61H"], "p1": ["G3R", "G14R"], "p17": ["M1I", "V7I", "R28Q", "I34V", "G62A", "G71R", "K76R", "Y79F", "D102E", "V128S"], "p2": ["T9-", "-11A"], "p24": ["M10I", "E29K", "E45D", "Q50S", "T54A", "T58I", "V83T", "P93A", "R97K", "G106R", "T110N", "Q116H", "G156R", "T171A", "R173K", "N183G", "K203R", "G208E", "L211I", "E213K"], "p6": ["L1I", "I21M", "-26K", "Q30E", "K31Q", "E33D", "L35G", "Y36R"], "p7": ["R10G", "E21Q", "G22R", "R26K", "R29K", "R41K", "G43R", "Q45L"], "pro": ["L19I", "I72T", "V77I"], "rev": ["Q14T", "T15A", "P28L", "A57D", "L78I", "N86S", "S112P"], "tat": ["P3L", "R7K", "R52W", "P59S", "P60H", "D61S", "S70P", "S87P"], "vif": ["R37N", "R50K", "K63E", "N140S", "I154R", "T167K", "T180I"], "vpr": ["T19A", "N28S", "P37I", "E48D"], "vpu": ["P3S", "Q5L", "A7Y", "A8S", "T24S", "K38R", "D40N", "E60D", "L61A", "A63E", "E66A", "-69D", "-71M", "-72E", "H73L", "A75I", "N80G", "D81N"]}, "labels": {"aa": "INT: T124N, T125A, F181L, I257L; RT-p51: P4S, T39A, I178M, T200A, E248N, A304E, E344D, L377T, K388R, R390K, A435T; RT-p66: P4S, T39A, I178M, T200A, E248N, A304E, E344D, L377T, K388R, R390K, A435T, L452V, M469I, S554N; gp120: A2T, T21S, E59G, N102H, T104N, N108S, -109G, T112S, N113T, S115N, -116R, -117T, -118L, -119G, -120M, -123E, K138G, K150N, V153I, N160-, I173L, D202N, K212T, R224K, V227A, L233I, E247S, F249L, S250T, A253T, I257L, V258I, E262A, S278G, A288V, K315Q, K319T, R322G, V344T, N368I, -370G, -371T, -372R, -382E, -383S, K412Q, R416K, L424I, L425I, N435T, G443A, N446D, V468I; gp41: A6V, V69I, I84L, D110N, E119Q, D125G, E137K, N166K, V182I, V194I, L210F, I222T, T236Q, H239T, T268A, I319V, F329V, H331N, I332V; nef: A15E, T23N, K39Q, A53D, W57F, Q61H; p1: G3R, G14R; p17: M1I, V7I, R28Q, I34V, G62A, G71R, K76R, Y79F, D102E, V128S; p2: T9-, -11A; p24: M10I, E29K, E45D, Q50S, T54A, T58I, V83T, P93A, R97K, G106R, T110N, Q116H, G156R, T171A, R173K, N183G, K203R, G208E, L211I, E213K; p6: L1I, I21M, -26K, Q30E, K31Q, E33D, L35G, Y36R; p7: R10G, E21Q, G22R, R26K, R29K, R41K, G43R, Q45L; pro: L19I, I72T, V77I; rev: Q14T, T15A, P28L, A57D, L78I, N86S, S112P; tat: P3L, R7K, R52W, P59S, P60H, D61S, S70P, S87P; vif: R37N, R50K, K63E, N140S, I154R, T167K, T180I; vpr: T19A, N28S, P37I, E48D; vpu: P3S, Q5L, A7Y, A8S, T24S, K38R, D40N, E60D, L61A, A63E, E66A, -69D, -71M, -72E, H73L, A75I, N80G, D81N"}}}]}]}, {"name": "results/subtype_trees/CRF71_BF1.nwk", "node_attrs": {"div": 0.12057, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T49-", "A50-", "G401A", "A410G", "A699G", "G712-", "G1773A", "A2038G", "A2311G", "A2612G", "T3450A", "A3868G", "G4150A", "A4677G", "T4793C", "G5359T", "A5447C", "A5784G", "-5801G", "A5825C", "C5834T", "A5867G", "G6023A", "T6024A", "G6179A", "T6187C", "-6204A", "-6205G", "A6265G", "G6277A", "C6318A", "A6371G", "T6382C", "G6458A", "A6578G", "A6669G", "A6723G", "T6724G", "C6810T", "-6978A", "-6979A", "C7127A", "G7631C", "A7668G", "G7847A", "G8255A", "A8486-", "G8487-", "C8488-", "A8489-", "G8490-", "C8491-", "C8509T", "T8595-", "G8875A", "C9018A", "C9023A", "T9084A", "A9159G"], "INT": ["T124A"], "RT-p66": ["L452K"], "gp120": ["V57K", "N105D", "-123K", "I137M", "N160-", "I173V", "D202N", "I242V", "N272S", "Y290W", "V332I", "L425I", "E436T"], "gp41": ["N96T", "D110Q", "K122R", "V182I", "A189V", "V318I"], "nef": ["A50-", "N51-", "A56V", "R178K"], "p17": ["T122A"], "p6": ["P23S"], "tat": ["K24P"], "vif": ["I31V", "G60E"], "vpu": ["H73-", "A75-", "P76-", "D78-", "V79-", "N80-", "D81-"]}, "labels": {"aa": "INT: T124A; RT-p66: L452K; gp120: V57K, N105D, -123K, I137M, N160-, I173V, D202N, I242V, N272S, Y290W, V332I, L425I, E436T; gp41: N96T, D110Q, K122R, V182I, A189V, V318I; nef: A50-, N51-, A56V, R178K; p17: T122A; p6: P23S; tat: K24P; vif: I31V, G60E; vpu: H73-, A75-, P76-, D78-, V79-, N80-, D81-", "clade": "CRF71_BF1"}}, "children": [{"name": "CRF71_BF1_NODE_0000001", "node_attrs": {"div": 0.12082999999999999, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A3010G", "-6961T", "-6974A", "-6975C", "C7941A", "A8851T"], "gp41": ["P213Q", "A325V"]}, "labels": {"aa": "gp41: P213Q, A325V"}}, "children": [{"name": "DQ358811", "node_attrs": {"div": 0.15283, "accession": "DQ358811", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02BR033"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C264T", "-305T", "G369C", "A387C", "A389C", "A418G", "A425G", "C467T", "C516T", "T534G", "G599A", "G608A", "C641T", "G690A", "G703A", "-712A", "G717A", "T718C", "A730T", "A774C", "T777A", "G818A", "T824G", "T992G", "C1013T", "G1019A", "A1025G", "T1181C", "T1262C", "A1263T", "A1278G", "T1299A", "C1316T", "A1400G", "T1409C", "G1412A", "-1450A", "-1451T", "-1452A", "-1453C", "-1454A", "-1455A", "-1457T", "A1461G", "C1541T", "G1543A", "G1588A", "A1600T", "C1613T", "A1673G", "G1691A", "C1724T", "C1749T", "T1752C", "A1772G", "T1783A", "G1784C", "C1826A", "G1828A", "G1852A", "A1857G", "C1903T", "A1958G", "A1962G", "T1978G", "A1982G", "T1986C", "T2024C", "G2038A", "T2043C", "T2066A", "G2074A", "A2075C", "T2095C", "G2131A", "A2182G", "A2185G", "A2210G", "A2215T", "A2241G", "G2273A", "A2304G", "T2353C", "T2365C", "A2380G", "A2396C", "A2738T", "C2739T", "A2750C", "T2854C", "C2953T", "G3004A", "G3173A", "C3175T", "G3221T", "C3275T", "A3279G", "G3307A", "C3412T", "A3447G", "T3492C", "T3497C", "C3542T", "A3543G", "A3562G", "T3644A", "A3670G", "A3706G", "G3755A", "A3825G", "C3857T", "A3871G", "G3989A", "A4063G", "G4145A", "T4282A", "A4376G", "C4428T", "G4459A", "A4498G", "C4667T", "T4702G", "G4708A", "A4725T", "C4728A", "A4775T", "A4781G", "G4887A", "T4959A", "A4968G", "C5034A", "A5037T", "A5049C", "C5052T", "A5057G", "G5075A", "C5086A", "A5112G", "G5167T", "T5194A", "T5197C", "A5215G", "A5324G", "T5359A", "G5363A", "A5446C", "A5462T", "G5463A", "G5557A", "C5567A", "T5578C", "T5584C", "A5587G", "C5614T", "A5621C", "T5627C", "T5648C", "T5677A", "G5700A", "T5705G", "G5717A", "A5718G", "G5747T", "G5839A", "G5882A", "C5924T", "C5958G", "G5972A", "T5974C", "C5989T", "A6023G", "A6024C", "A6031G", "A6065G", "T6085G", "A6132G", "A6133G", "T6154C", "T6160C", "-6170T", "-6171T", "-6172A", "A6174G", "-6175G", "A6179G", "-6180T", "C6202T", "A6206G", "-6210T", "-6211G", "-6221A", "A6235G", "C6253G", "G6260A", "A6261G", "A6266G", "A6267G", "G6269A", "G6280A", "G6314A", "A6316G", "A6318C", "G6323A", "A6327G", "A6367C", "G6368C", "T6369G", "G6371A", "G6451A", "A6465C", "C6477A", "C6483T", "A6489C", "G6525A", "G6572A", "T6602A", "G6604A", "G6605A", "T6637A", "T6641C", "G6714A", "A6734G", "T6735A", "G6771A", "A6779C", "-6835G", "A6836C", "A6848G", "T6856C", "A6859T", "G6894C", "T6928C", "A6929T", "-6956T", "-6957A", "-6959G", "-6960G", "-6962A", "-6963A", "-6964T", "-6965A", "-6966C", "-6967T", "-6968T", "-6969G", "-6970G", "-6971A", "-6972G", "-6973T", "-6977G", "T6988A", "A6989T", "-6990T", "C6993A", "-6996A", "-6997G", "-6998G", "-6999A", "-7000A", "-7001A", "-7002A", "-7005A", "-7006C", "-7009A", "C7014G", "A7015C", "G7054A", "A7088C", "T7106A", "A7129G", "A7148C", "A7157C", "C7159G", "A7161T", "C7165A", "A7190G", "T7192C", "A7239G", "G7256A", "G7307A", "T7325C", "G7369A", "A7398T", "G7426A", "A7504C", "A7561T", "T7591C", "C7625A", "T7630C", "G7658C", "A7722T", "C7723T", "A7747C", "A7764C", "A7796T", "A7818G", "C7869T", "G7871A", "A7929G", "G8008A", "A8023C", "G8173A", "T8182G", "A8193G", "C8215T", "A8258T", "A8288G", "C8291A", "G8323T", "T8375G", "A8396C", "A8405G", "A8438G", "-8486T", "-8487G", "-8488A", "-8489A", "T8492-", "A8493-", "A8494-", "C8495-", "A8571C", "A8580T", "C8581A", "-8595G", "T8603C", "A8657G", "T8666C", "G8682A", "C8687T", "A8693G", "T8747C", "G8795C", "A8796C", "C8809A", "T8864G", "G8886C", "T8887A", "G8905T", "G8922A", "C8928A", "G8929A", "G8955A", "T9046G"], "INT": ["V72I", "A124T", "I201V", "T218I"], "RT-p51": ["T39A", "E40D", "K49R", "V60I", "K70R", "K101Q", "T215F", "K219Q", "A360T", "A376S", "K395R"], "RT-p66": ["T39A", "E40D", "K49R", "V60I", "K70R", "K101Q", "T215F", "K219Q", "A360T", "A376S", "K395R", "K451R", "V466A", "S468P", "Q483W", "L517I", "A554T"], "gp120": ["N5D", "V10I", "T35R", "V40I", "K57A", "N71D", "H77Q", "K93R", "-106L", "-107R", "-109V", "N113T", "-116S", "-117E", "-118G", "-119M", "I133M", "K138G", "D139N", "V154M", "D157K", "N158E", "-159N", "-160S", "V172R", "V173I", "K204T", "T208K", "P210L", "K212T", "R224K", "E240K", "E247D", "S250T", "D251N", "V255I", "N261K", "S263P", "R287K", "S306N", "K309Q", "K319I", "-326K", "N327H", "I332V", "Q335H", "S347T", "T359S", "-368F", "-381E", "-382E", "-383N", "T387S", "K412Q", "S418T", "I425M", "N432H", "N435D", "T437H", "N446D", "K462R", "V468I"], "gp41": ["V2I", "F8L", "Q32L", "L108M", "E119Q", "D129G", "N140I", "E148D", "K154T", "T165S", "K172R", "V190I", "H209R", "S293R", "K297R", "I319L", "I329V", "L330I"], "nef": ["E18D", "A49E", "T80Y", "V114I", "E151D", "K152Q", "A156D", "Q170L", "D174E", "V182Q", "R188L", "V194M", "R196K", "D205N"], "p17": ["E12Q", "K18H", "K28R", "S67A", "K91R", "A119T", "G123E", "S126N", "V128T", "Y132F"], "p2": ["I13V"], "p24": ["I15L", "S16T", "H87Q", "M96I", "T178S", "N183G", "L190M"], "p6": ["-32N", "L35H", "W50*"], "p7": ["R26K", "R41K", "Q45L"], "pro": ["L10I", "K20R", "I54V", "K55R", "D60E", "I62V", "L63P", "V82A", "L90M", "I93L"], "rev": ["L18I", "A54T", "I59L", "V109I", "S112A"], "tat": ["K29I", "D61N", "T64N", "S68P", "S70P", "K71E", "T74A"], "vif": ["F39C", "R41K", "R47W", "H48N", "K63N", "G101S", "L125I", "I128V", "L150I", "T151S", "T155P", "P156S", "T167K", "K176E"], "vpr": ["Q3R", "E21D"], "vpu": ["P3S", "Q5P", "V14A", "L27F", "I33R", "R37K", "R47I", "A65G"]}, "labels": {"aa": "INT: V72I, A124T, I201V, T218I; RT-p51: T39A, E40D, K49R, V60I, K70R, K101Q, T215F, K219Q, A360T, A376S, K395R; RT-p66: T39A, E40D, K49R, V60I, K70R, K101Q, T215F, K219Q, A360T, A376S, K395R, K451R, V466A, S468P, Q483W, L517I, A554T; gp120: N5D, V10I, T35R, V40I, K57A, N71D, H77Q, K93R, -106L, -107R, -109V, N113T, -116S, -117E, -118G, -119M, I133M, K138G, D139N, V154M, D157K, N158E, -159N, -160S, V172R, V173I, K204T, T208K, P210L, K212T, R224K, E240K, E247D, S250T, D251N, V255I, N261K, S263P, R287K, S306N, K309Q, K319I, -326K, N327H, I332V, Q335H, S347T, T359S, -368F, -381E, -382E, -383N, T387S, K412Q, S418T, I425M, N432H, N435D, T437H, N446D, K462R, V468I; gp41: V2I, F8L, Q32L, L108M, E119Q, D129G, N140I, E148D, K154T, T165S, K172R, V190I, H209R, S293R, K297R, I319L, I329V, L330I; nef: E18D, A49E, T80Y, V114I, E151D, K152Q, A156D, Q170L, D174E, V182Q, R188L, V194M, R196K, D205N; p17: E12Q, K18H, K28R, S67A, K91R, A119T, G123E, S126N, V128T, Y132F; p2: I13V; p24: I15L, S16T, H87Q, M96I, T178S, N183G, L190M; p6: -32N, L35H, W50*; p7: R26K, R41K, Q45L; pro: L10I, K20R, I54V, K55R, D60E, I62V, L63P, V82A, L90M, I93L; rev: L18I, A54T, I59L, V109I, S112A; tat: K29I, D61N, T64N, S68P, S70P, K71E, T74A; vif: F39C, R41K, R47W, H48N, K63N, G101S, L125I, I128V, L150I, T151S, T155P, P156S, T167K, K176E; vpr: Q3R, E21D; vpu: P3S, Q5P, V14A, L27F, I33R, R37K, R47I, A65G"}}}, {"name": "CRF71_BF1_NODE_0000002", "node_attrs": {"div": 0.12408, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A4774C", "G4892A", "G5626T", "G5861A", "C6189A", "G6207A", "A6278C", "C6336A", "C7165T", "A8050G", "C8904A", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "A9095-", "G9096-", "T9097-", "T9098-", "T9107-", "C9108-", "T9109-", "G9110-", "A9111-", "G9112-", "C9113-", "C9114-", "T9115-", "G9116-", "G9117-", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-", "G9127-", "G9128-", "C9129-", "T9130-", "A9131-", "G9132-", "C9133-", "T9134-", "A9135-", "G9136-", "G9138-"], "gp120": ["A3T", "-109T", "K142Q", "V154T", "T161-"], "gp41": ["I24M", "R233T"], "nef": ["K39R", "Y102W"], "p24": ["I6L"], "p7": ["I24L"], "rev": ["Q51H", "N86D"], "tat": ["P24T"], "vif": ["K63T"], "vpr": ["Q85L"], "vpu": ["A7L", "E66A"]}, "labels": {"aa": "gp120: A3T, -109T, K142Q, V154T, T161-; gp41: I24M, R233T; nef: K39R, Y102W; p24: I6L; p7: I24L; rev: Q51H, N86D; tat: P24T; vif: K63T; vpr: Q85L; vpu: A7L, E66A"}}, "children": [{"name": "CRF71_BF1_NODE_0000003", "node_attrs": {"div": 0.13108999999999998, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C467T", "A585G", "C586T", "G1016A", "G1388A", "-1444C", "-1445A", "-1446A", "A1536C", "A1709G", "C1775G", "C1981T", "C2199T", "G2422A", "A2548G", "G3679A", "T3970C", "A4083G", "C4321T", "G4354A", "G4495A", "A4695G", "G4737A", "G4764A", "A4911C", "A5085G", "G5087A", "G5143A", "A5159G", "C5221T", "C5268A", "C5447A", "C5614T", "A5632G", "G5668A", "G5830A", "-6211T", "-6212A", "-6214A", "A6219T", "G6265A", "A6303C", "G6451A", "G6566T", "G6638C", "A6686G", "A6773G", "T6810A", "A6811G", "-6977G", "-6996A", "-6997A", "-6998G", "-7001A", "-7002A", "T7105C", "G7162C", "C7171T", "A7322G", "T7588C", "T7622A", "C7623A", "G7628A", "A7629G", "A7998G", "G8001C", "C8047T", "A8104G", "C8294A", "A8388G", "T8543C", "G8619A", "A8746T", "T8786G", "G8905A", "G8924A"], "INT": ["S17N", "K103R"], "RT-p51": ["T35I"], "RT-p66": ["T35I"], "gp120": ["K150T", "A238S", "E262Q", "S278G", "-377S", "-378N", "-380T", "-381E", "-382G", "-383N"], "gp41": ["M7V", "S107N", "D109S", "D232G", "H331N"], "nef": ["I16V", "E93K", "Y135F"], "p17": ["T84V"], "p6": ["L35-"], "rev": ["P67S"], "tat": ["T24N"], "vif": ["R37G", "V51I", "E60K", "T167A", "S186N"], "vpr": ["T19A", "A55E"], "vpu": ["P3S", "I9V", "V21I"]}, "labels": {"aa": "INT: S17N, K103R; RT-p51: T35I; RT-p66: T35I; gp120: K150T, A238S, E262Q, S278G, -377S, -378N, -380T, -381E, -382G, -383N; gp41: M7V, S107N, D109S, D232G, H331N; nef: I16V, E93K, Y135F; p17: T84V; p6: L35-; rev: P67S; tat: T24N; vif: R37G, V51I, E60K, T167A, S186N; vpr: T19A, A55E; vpu: P3S, I9V, V21I"}}, "children": [{"name": "KJ849778", "node_attrs": {"div": 0.18569, "accession": "KJ849778", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE092"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T163A", "G206A", "G282A", "C300T", "A301G", "A304T", "G369A", 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"G2995A", "T3002C", "G3058A", "A3080G", "T3132A", "A3192G", "G3214A", "T3225A", "A3229G", "A3259G", "G3264A", "C3275T", "T3292A", "A3302T", "T3323-", "G3324-", "G3325-", "T3335-", "G3336-", "G3337-", "G3338A", "G3340A", "T3371-", "G3372-", "G3373-", "T3380A", "G3407A", "G3426A", "G3452A", "G3461A", "G3462A", "A3463G", "G3479A", "T3493A", "G3506A", "G3527A", "A3539G", "T3541C", "G3544C", "T3567C", "G3605A", "C3610T", "T3644C", "A3676C", "A3682G", "T3698-", "G3699-", "G3700-", "A3703G", "G3716A", "G3722A", "G3725A", "G3755A", "C3756A", "G3758A", "G3759A", "G3765A", "G3785A", "G3814A", "C3823T", "G3834A", "G3841A", "G3848A", "G3859A", "T3867C", "G3896A", "G3914A", "G3917A", "G3929A", "G3930A", "T3943C", "T3946C", "G3983A", "C3994A", "G3997A", "G4019A", "T4024C", "A4025T", "G4049A", "A4111T", "T4135C", "T4166-", "G4167-", "G4170A", "G4176A", "C4180-", "A4181-", "A4182-", "T4192C", "G4193-", "G4194-", "C4195-", "G4220A", "A4231G", "T4234C", "A4238-", "A4239-", "T4240-", "G4252A", "G4262A", "A4264G", "G4272A", "G4279A", "T4282-", "G4283-", "A4284-", "T4291-", "A4292-", "A4293-", "G4309A", "A4331G", "A4332G", "G4365A", "A4369C", "A4397T", "A4406G", "A4407G", "G4446A", "G4475A", "A4512G", "A4538-", "G4549A", "T4701A", "T4703G", "G4727A", "G4735A", "A4768G", "A4782G", "G4802A", "T4805G", "A4806C", "A4819C", "G4888A", "A4937C", "C4965A", "A4966G", "T4969A", "G4986A", "T4988C", "A5057G", "A5059G", "T5084C", "A5090G", "A5137G", "G5140A", "G5153C", "A5173G", "T5203C", "C5234A", "A5235C", "G5275A", "C5306A", "G5308A", "T5356C", "T5359C", "G5382A", "T5472A", "A5493G", "C5495A", "C5513T", "G5529C", "A5535G", "A5556G", "A5558G", "C5563A", "A5566G", "T5576C", "T5584C", "A5601G", "C5611T", "A5612T", "T5617C", "T5618C", "C5620T", "A5622C", "G5629A", "A5634G", "C5654T", "A5659T", "T5677A", "C5679T", "T5686C", "C5688T", "C5713G", "G5737A", "G5747T", "A5754G", "G5781A", "G5783A", "G5784A", "A5805T", "C5833T", "A5840G", "C5869A", "T5871C", "A5915T", "C5920T", "A5965C", "A6009G", "G6020A", "A6023G", "T6026A", "G6029A", "C6039T", "G6088T", "C6115T", "A6164T", "G6167-", "A6168-", "T6169-", "A6173-", "A6174-", "A6176-", "A6177-", "T6178-", "A6179-", "T6181-", "A6182-", "C6183-", "T6184-", "A6185-", "A6186-", "C6187-", "A6188-", "A6189-", "C6190-", "C6192A", "T6196G", "G6198C", "T6199C", "A6200C", "G6201T", "C6202A", "G6203C", "A6208T", "-6210T", "-6213C", "A6222-", "A6223-", "A6230C", "G6232A", "A6235G", "A6257T", "G6260A", "A6261G", "C6262T", "A6285G", "T6287C", "C6293T", "T6299A", "G6314A", "T6315C", "A6318C", "A6322G", "T6331G", "A6332T", "A6333C", "T6337C", "G6339A", "C6370A", "G6392A", "T6457A", "A6458G", "C6477A", "C6499T", "T6517C", "A6538C", "C6595G", "T6602A", "A6617G", "C6667A", "A6684C", "T6720A", "T6735A", "G6774A", "A6776G", "A6798G", "T6807C", "A6809G", "A6833-", "A6834-", "A6858C", "C6874T", "C6876T", "T6888C", "G6889A", "A6944G", "-6956A", "-6957A", "T6958C", "-6959T", "-6960C", "-6980A", "-6981A", "-6982T", "-6983T", "-6984C", "-6985A", "-6990A", "-6999G", "-7000A", "G7004A", "-7005A", "-7006A", "-7009A", "C7014T", "A7065G", "C7094A", "A7096C", "A7102C", "T7117C", "G7126A", "T7130A", "A7161G", "A7163C", "G7168A", "C7170T", "T7180A", "G7182C", "A7186G", "G7197A", "T7222C", "A7234G", "A7261G", "A7269G", "G7291A", "G7307A", "A7309T", "C7328A", "A7372G", "A7375G", "A7420G", "G7426A", "A7428G", "G7441A", "G7513A", "G7524A", "A7525C", "T7537C", "G7552A", "C7579T", "C7605A", "T7606G", "G7608C", "T7609C", "A7620G", "C7631G", "G7633A", "A7634C", "G7640A", "A7641G", "A7644G", "A7646C", "G7648A", "A7655C", "T7656A", "G7658C", "G7660A", "G7668A", "G7688A", "A7747C", "C7792A", "A7796T", "C7801G", "A7858G", "T7894C", "A7912C", "C7921A", "T7932A", "G7937A", "A7941C", "A7962G", "A7990C", "C8005A", "G8018C", "T8020C", "A8032G", "G8042A", "C8051A", "A8069C", "G8070T", "C8071T", "C8145T", "T8155C", "C8171A", "T8182C", "A8188G", "G8242A", "C8265G", "T8266G", "A8288G", "A8297G", "G8323T", "G8402A", "G8407A", "A8409C", "C8411T", "C8412G", "C8413T", "T8414C", "A8417T", "A8458G", "T8477C", "G8528A", "G8534A", "G8554C", "T8568C", "A8570G", "G8590C", "-8595G", "A8636T", "C8640A", "A8643G", "A8647G", "C8648G", "A8657G", "T8685C", "C8720T", "G8738A", "T8740C", "A8796G", "C8810T", "T8843C", "T8851A", "T8855G", "G8858A", "G8877C", "A8885G", "G8888A", "C8906G", "C8921T", "G8933C", "A8969T", "G9007A", "G9016A", "A9023G", "G9040A"], "INT": ["G4R", "R20K", "M22I", "D25N", "V31A", "D41N", "G47R", "E48K", "G52K", "G70R", "G82R", "I84L", "E92K", "W131-", "S255-", "E256-", "I257-"], "RT-p51": ["E6D", "V135L", "T200A", "E207A", "K211T", "R277K", "D291A", "I292V", "I329V", "F346Y", "K366R", "L377Q", "R390K", "D399E", "T403S", "W410-", "W414K", "E415-", "W426-", "L429I", "E438K"], "RT-p66": ["E6D", "V135L", "T200A", "E207A", "K211T", "R277K", "D291A", "I292V", "I329V", "F346Y", "K366R", "L377Q", "R390K", "D399E", "T403S", "W410-", "W414K", "E415-", "W426-", "L429I", "E438K", "G444E", "G453R", "G456K", "G462R", "E471K", "E478K", "I482V", "Q483H", "L491S", "G504R", "K527N", "W535-", "G541R", "G543R", "G544R", "A554N", "G555K", "R557K"], "gp120": ["N5E", "L6E", "T21S", "N52S", "V56I", "K57E", "L58M", "E59K", "T62I", "E78D", "T104S", "D105-", "T109R", "N111L", "T112Q", "S114-", "S115-", "-120I", "M121T", "E122M", "K123V", "M126L", "T135S", "M137I", "E144G", "Y145H", "L147F", "Y149N", "I156M", "D157E", "S162-", "V180I", "N201K", "N202D", "T208K", "S250T", "K277T", "F289Y", "E294N", "R307E", "T308A", "K315R", "V318A", "K319E", "N327-", "-328N", "Q335P", "P341L", "M345T", "N364D", "-368N", "N369-", "-373S", "-374T", "-375E", "-376N", "-379N", "D384K", "T387I", "K404R", "Q414N", "R416S", "L426I", "N435D", "T437S", "T439I", "G443A", "R448K", "K472R"], "gp41": ["V2I", "L9I", "N42S", "R74N", "T101K", "S102T", "K106R", "Q110E", "I111L", "D113G", "N114S", "M115N", "M118Q", "E119Q", "R122K", "D129S", "E148D", "D163E", "T165S", "N166K", "V189A", "F206L", "L210H", "A212T", "Q213P", "E220G", "R229S", "D239H", "V247I", "S256L", "A281V", "Q290K", "A321G", "I329V", "I332V"], "nef": ["M20I", "R22Q", "A49N", "R71T", "G83A", "E98D", "L100I", "I101V", "Y115H", "I133T", "K152E", "H171Q", "E179Q", "R188K", "E197D"], "p17": ["E12K", "R15K", "K30Q", "G62R", "Y79F", "K91G", "K112Q", "K114Q", "S126-"], "p2": ["N8T", "T9N", "T12-"], "p24": ["L83T", "V86M", "I91L", "T107S", "E128D", "V148T"], "p6": ["L1P", "N3S", "E19-", "I21G", "T22I", "S23A", "P25S", "-26P", "Q30P", "K31-", "E33-", "G34-", "Y36-", "K42R"], "p7": ["K3R", "Q9P", "R10K", "V13I", "K38R", "R52G"], "pro": ["K57R", "D60E", "I62V", "I64M"], "rev": ["S5T", "D7G", "K14R", "T15A", "F21L", "S30N", "G57A", "W58R", "N62D", "G65D", "T68E", "Q74P", "T108K", "S112P", "T114A"], "tat": ["F32L", "I39M", "T40K", "S46F", "K51N", "D61G", "Q63K", "T64A", "V67A", "S70P", "S75T", "K85E"], "vif": ["F39M", "R50K", "K61R", "I66V", "H73Q", "T74P", "D78A", "G101D", "I109L", "E117D", "H127S", "I128K", "D134N", "K158R", "K184R", "G185E", "M189I"], "vpr": ["E17Q", "Q44T", "L68I", "I84T", "L85P", "A93T"], "vpu": ["Q2L", "L4P", "Q5Y", "A8T", "A16V", "I18L", "Q36E", "D44N", "R47I", "A65G", "A66D"]}, "labels": {"aa": "INT: G4R, R20K, M22I, D25N, V31A, D41N, G47R, E48K, G52K, G70R, G82R, I84L, E92K, W131-, S255-, E256-, I257-; RT-p51: E6D, V135L, T200A, E207A, K211T, R277K, D291A, I292V, I329V, F346Y, K366R, L377Q, R390K, D399E, T403S, W410-, W414K, E415-, W426-, L429I, E438K; RT-p66: E6D, V135L, T200A, E207A, K211T, R277K, D291A, I292V, I329V, F346Y, K366R, L377Q, R390K, D399E, T403S, W410-, W414K, E415-, W426-, L429I, E438K, G444E, G453R, G456K, G462R, E471K, E478K, I482V, Q483H, L491S, G504R, K527N, W535-, G541R, G543R, G544R, A554N, G555K, R557K; gp120: N5E, L6E, T21S, N52S, V56I, K57E, L58M, E59K, T62I, E78D, T104S, D105-, T109R, N111L, T112Q, S114-, S115-, -120I, M121T, E122M, K123V, M126L, T135S, M137I, E144G, Y145H, L147F, Y149N, I156M, D157E, S162-, V180I, N201K, N202D, T208K, S250T, K277T, F289Y, E294N, R307E, T308A, K315R, V318A, K319E, N327-, -328N, Q335P, P341L, M345T, N364D, -368N, N369-, -373S, -374T, -375E, -376N, -379N, D384K, T387I, K404R, Q414N, R416S, L426I, N435D, T437S, T439I, G443A, R448K, K472R; gp41: V2I, L9I, N42S, R74N, T101K, S102T, K106R, Q110E, I111L, D113G, N114S, M115N, M118Q, E119Q, R122K, D129S, E148D, D163E, T165S, N166K, V189A, F206L, L210H, A212T, Q213P, E220G, R229S, D239H, V247I, S256L, A281V, Q290K, A321G, I329V, I332V; nef: M20I, R22Q, A49N, R71T, G83A, E98D, L100I, I101V, Y115H, I133T, K152E, H171Q, E179Q, R188K, E197D; p17: E12K, R15K, K30Q, G62R, Y79F, K91G, K112Q, K114Q, S126-; p2: N8T, T9N, T12-; p24: L83T, V86M, I91L, T107S, E128D, V148T; p6: L1P, N3S, E19-, I21G, T22I, S23A, P25S, -26P, Q30P, K31-, E33-, G34-, Y36-, K42R; p7: K3R, Q9P, R10K, V13I, K38R, R52G; pro: K57R, D60E, I62V, I64M; rev: S5T, D7G, K14R, T15A, F21L, S30N, G57A, W58R, N62D, G65D, T68E, Q74P, T108K, S112P, T114A; tat: F32L, I39M, T40K, S46F, K51N, D61G, Q63K, T64A, V67A, S70P, S75T, K85E; vif: F39M, R50K, K61R, I66V, H73Q, T74P, D78A, G101D, I109L, E117D, H127S, I128K, D134N, K158R, K184R, G185E, M189I; vpr: E17Q, Q44T, L68I, I84T, L85P, A93T; vpu: Q2L, L4P, Q5Y, A8T, A16V, I18L, Q36E, D44N, R47I, A65G, A66D"}}}, {"name": "KJ849771", "node_attrs": {"div": 0.18531999999999998, "accession": "KJ849771", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE071"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G10A", "T13C", "-22T", "-23T", "-24T", "-25G", "-26A", "-27G", "-28C", "-29C", "-30T", "-31G", "-32G", "-33G", "-34A", "-35G", "-36C", "-37T", "-38C", "-39T", "-41T", "-45C", "-46A", "-47A", "-49T", "-50A", "C54A", "A57C", "A62G", "G66A", "-68G", "-69C", "-70C", "-71T", "-72C", "-73A", "-74A", "-75T", "-76A", "-77A", "-78A", "-79G", "-80C", "-81T", "-82T", "-83G", "-84C", "-85C", "-86T", "-87T", "-88G", "-89A", "-90G", "-91T", "-92G", "-93C", "-94T", "-95T", "-96C", "-97A", "G119T", "A161T", "T200C", "C258T", "A265G", "-305A", "A353G", "A378C", "T396C", "T422C", "A424G", "T479A", "A499G", "A554G", "G579A", "G607A", "A674T", "-712A", "C713T", "T718C", "A730T", "C749G", "G770A", "A774C", "G810A", "C830T", "T852A", "C893T", "C950T", "A959G", "A977G", "T978G", "T1001C", "A1010G", "C1013T", "G1022A", "A1073G", "C1137T", "C1244T", "A1278G", "G1298A", "G1302A", "G1313A", "T1335C", "C1350G", "C1351G", "C1447A", "A1448T", "A1449-", "-1455G", "-1457A", "-1458A", "-1459C", "-1460T", "A1461G", "T1478C", "G1498A", "T1514C", "C1523T", "G1588A", "A1592G", "A1595G", "A1607G", "C1610A", "T1646C", "A1670G", "A1694G", "G1697A", "A1700C", "A1701C", "T1741C", "A1773G", "A1781G", "C1782A", "T1783A", "A1819G", "G1852A", "A1867T", "A1980G", "G2026A", "A2063T", "T2116A", "A2188C", "A2206C", "C2211A", "A2212T", "A2215G", "A2241G", "C2263T", "A2275C", "A2344G", "C2383T", "G2428A", "A2459G", "G2498A", "T2499C", "G2509A", "G2539A", "T2542C", "A2557G", "T2607A", "G2612A", "C2626T", "C2635A", "C2694T", "A2699G", "G2707A", "A2710G", "G2714C", "T2737C", "C2749T", "A2761G", "T2779G", "G2833A", "T2935C", "C2968T", "C2975A", "T2983C", "T3013C", "G3019A", "T3049C", "T3059A", "A3080C", "G3100A", "G3173A", "A3196G", "G3221T", "C3224T", "G3250A", "A3268G", "A3277G", "A3279G", "A3316G", "C3352T", "C3444G", "C3445T", "A3447G", "A3450G", "A3451G", "T3492C", "T3497C", "T3505C", "C3533A", "A3571G", "A3583G", "C3589T", "A3619C", "T3668C", "A3676G", "C3691T", "G3694A", "G3695A", "T3746C", "A3772C", "A3796G", "A3802G", "A3805T", "C3856T", "G3869A", "A3890C", "G3891A", "C3892A", "G3925A", "G3989A", "A4045G", "G4057A", "C4140T", "C4210T", "G4267A", "T4288C", "T4291G", "C4525T", "G4622A", "A4664G", "G4677A", "T4717A", "A4773G", "C4774T", "T4776A", "G4829A", "A4845G", "A4850G", "G4864A", "G4865A", "G4871T", "C4907T", "T4912A", "A4951G", "T4967A", "T4976A", "C4978A", "T4988A", "A5061G", "T5062G", "C5091T", "A5134G", "A5155G", "G5165A", "A5166G", "G5167T", "A5187G", "G5212A", "T5228C", "G5233A", "C5237T", "G5257A", "T5293C", "G5385A", "A5432G", "T5470A", "T5472G", "T5487C", "A5496G", "G5548C", "C5567A", "G5599A", "T5616C", "T5626A", "T5636C", "C5651T", "A5656C", "G5673T", "C5688A", "A5718G", "A5805C", "C5833A", "C5851T", "T5857G", "C5862A", "G5866A", "G5867A", "C5869T", "G5902A", "C5922T", "C5958A", "G5963A", "C5964T", "A6025T", "A6030G", "C6052T", "A6059G", "T6101A", "A6112G", "A6131G", "T6134C", "A6158C", "G6167A", "-6170G", "-6171T", "-6172A", "A6174G", "-6175C", "A6177T", "-6180C", "C6183A", "A6185G", "A6186G", "C6192G", "G6195A", "G6198A", "G6203A", "A6204G", "G6205C", "A6207C", "A6208C", "-6210G", "-6213G", "A6215C", "T6216C", "-6221G", "G6225A", "T6252G", "A6261C", "A6263T", "A6277G", "G6284C", "C6293G", "G6311A", "T6315A", "A6316G", "C6317G", "A6330G", "A6333G", "A6335-", "A6336-", "T6337-", "A6338-", "G6339-", "C6340-", "G6349A", "T6351G", "C6361T", "G6371A", "C6375A", "G6379A", "T6395A", "C6397T", "T6457C", "A6461G", "A6465C", "A6475T", "A6508G", "G6533A", "A6544G", "C6545T", "G6569A", "G6572C", "A6576G", "G6581A", "T6582A", "A6583G", "A6584C", "A6589G", "T6592C", "A6594C", "G6605A", "T6618A", "A6623C", "G6634A", "A6635G", "T6641A", "A6648T", "G6669A", "C6670T", "C6717T", "G6723A", "G6724T", "G6725A", "A6733T", "T6760C", "C6766T", "C6777A", "A6779G", "A6781G", "T6787G", "A6797T", "A6798C", "C6800A", "A6814G", "-6830G", "-6831A", "-6832A", "-6835T", "T6838G", "A6839-", "A6840-", "A6841-", "A6848G", "T6849C", "T6856G", "T6860C", "C6862T", "G6884A", "G6894C", "T6895C", "G6906C", "T6928C", "T6952C", "-6956T", "-6957C", "-6959A", "-6960A", "T6961C", "-6962A", "-6963G", "-6964T", "-6965T", "-6966C", "-6967A", "-6968A", "-6969A", "-6970T", "-6971A", "-6972T", "-6973C", "-6980G", "-6981G", "-6982C", "-6990T", "-6999C", "-7000C", "G7004-", "A7007-", "C7008-", "A7036G", "A7037T", "G7055A", "A7089G", "A7090T", "A7095C", "C7124A", "T7147A", "T7150-", "A7151-", "A7152-", "C7159A", "A7161C", "A7190G", "A7252G", "A7299G", "T7330G", "G7390A", "T7432C", "T7433C", "C7489T", "G7492A", "A7589T", "A7604T", "T7606C", "T7678A", "A7687T", "C7690A", "C7699T", "C7701G", "C7702T", "A7743T", "A7747G", "T7748C", "C7755A", "G7773A", "A7782G", "A7847G", "T7852C", "G7868A", "A7873G", "G7885A", "T7888C", "C7950A", "A7955G", "G7956A", "A7971G", "A7986G", "A7992G", "G8006A", "G8050T", "C8063A", "T8097C", "T8103C", "C8149G", "A8170G", "G8204A", "G8276T", "A8284G", "T8321G", "T8322C", "G8323A", "G8329A", "T8337A", "A8363G", "G8385C", "C8386G", "T8387G", "A8405G", "T8440C", "A8456C", "A8457C", "-8486A", "-8487G", "-8488C", "-8489A", "-8490G", "-8491C", "C8503A", "T8504C", "T8505A", "G8506T", "T8507C", "T8509C", "A8525G", "G8531C", "G8537A", "C8546T", "C8552T", "A8555G", "A8580G", "C8581A", "T8582C", "G8588A", "-8595A", "A8617G", "A8622G", "T8646C", "A8654G", "T8666C", "T8675C", "C8684T", "G8717A", "G8732A", "A8739G", "T8747C", "G8753A", "G8799A", "A8805G", "A8811C", "T8813G", "G8814A", "G8817-", "G8818-", "A8819-", "A8827G", "T8829A", "T8832C", "G8870A", "T8883C", "G8886A", "T8918C", "C8934A", "G8955A", "T8973A", "A8977G", "A9018C", "A9023C", "T9029C", "G9080A", "T9081G", "C9083G", "A9084-", "G9085-", "G9086-", "A9104-", "G9105-", "A9106-", "A9139-", "A9140-", "C9141-", "C9142-", "C9143-", "A9144-", "C9145-", "T9146-", "G9147-", "C9148-", "T9149-", "T9150-", "A9151-", "A9152-", "G9153-", "C9154-", "C9155-", "T9156-", "A9162C"], "INT": ["E10D", "V32I", "S39Q", "M50I", "V72I", "T122I", "G283S"], "RT-p51": ["T39N", "K49R", "K122E", "V135T", "F171Y", "A173T", "T200I", "I202V", "E207Q", "P294T", "S322T", "I329L", "A360T", "A376S", "K395R"], "RT-p66": ["T39N", "K49R", "K122E", "V135T", "F171Y", "A173T", "T200I", "I202V", "E207Q", "P294T", "S322T", "I329L", "A360T", "A376S", "K395R", "T450S", "K451R", "K452R", "V466A", "S468P", "Q480K", "A534T"], "gp120": ["N1K", "T3K", "T23I", "T35K", "A37I", "K57N", "E59G", "K69E", "L83I", "K93E", "N102H", "D105N", "-106V", "-107S", "N108I", "N111P", "S115T", "-116S", "-117R", "-118P", "-119V", "-120E", "M121E", "K123M", "G124-", "E125-", "M126-", "I133S", "S136A", "M137L", "E144Q", "L147V", "V153I", "T154E", "P155E", "-159S", "I166R", "V173I", "T174K", "S181T", "K203E", "K204T", "V227I", "E239K", "E240Q", "E241G", "V243K", "I244L", "E247A", "D251N", "V255N", "I257L", "N261D", "S263T", "E265V", "S272N", "A288V", "W290Y", "A291T", "R307G", "T308K", "K309E", "N311K", "K315S", "Q316K", "-326E", "I332A", "N334K", "S336P", "V344I", "S347T", "G351A", "-368S", "-370S", "-379I", "D384I", "I395F", "G401R", "K412S", "Q414P", "L424M", "N433-", "N435K", "N446D", "K482R"], "gp41": ["M24I", "T96S", "T101S", "D125E", "D129G", "T133S", "Q147L", "A151E", "S157N", "N160S", "I182V", "V189T", "P216H", "R218E", "E223G", "E228G", "D230G", "G235R", "L254I", "L265S", "V267A", "V301I", "V325F", "F340A", "L345Q"], "nef": ["A15R", "V33A", "E38D", "R39Q", "-50A", "-51N", "A54D", "C55I", "V56A", "E63D", "T80D", "V85I", "K92R", "K94E", "W102H", "I133V", "V153I", "K155E", "N157Q", "E158K", "G159-", "N162S", "C163S", "Q170L", "V182M", "R188N", "L198M", "D205N"], "p17": ["K30R", "E55G", "V82I", "K113N", "S126N", "V128A", "Y132F"], "p2": ["T9-", "-11A", "I13V"], "p24": ["L6M", "I15L", "V27I", "S41T", "L83V", "N183G", "V191I", "P207G"], "p6": ["I21T", "S23P", "P24S", "-32E", "-35K", "N47S"], "p7": ["R11K", "R41K", "D48E"], "pro": ["N61S", "M89L"], "rev": ["E11D", "L18I", "Q36R", "R53Q", "T68S", "P72H", "Q101E", "T108A"], "tat": ["K19R", "F32M", "A58P", "T64N", "P81T", "G83S"], "vif": ["V31I", "F44Y", "T63V", "L64I", "I87V", "R93K", "R95S", "I109Q", "N122S", "H127Q", "S130R", "P131H", "D134E", "I159G", "H183R", "N190S"], "vpr": ["E21S", "N28S", "H45Y", "G94S"], "vpu": ["L7I", "V10A", "A15V", "I17L", "T24S", "E60D", "L61A", "A62E", "M67L", "-69D", "-71M", "-72G", "-73P", "-74L", "-75I", "-76I", "-77G", "-78D", "-79I", "-80N", "-81N"]}, "labels": {"aa": "INT: E10D, V32I, S39Q, M50I, V72I, T122I, G283S; RT-p51: T39N, K49R, K122E, V135T, F171Y, A173T, T200I, I202V, E207Q, P294T, S322T, I329L, A360T, A376S, K395R; RT-p66: T39N, K49R, K122E, V135T, F171Y, A173T, T200I, I202V, E207Q, P294T, S322T, I329L, A360T, A376S, K395R, T450S, K451R, K452R, V466A, S468P, Q480K, A534T; gp120: N1K, T3K, T23I, T35K, A37I, K57N, E59G, K69E, L83I, K93E, N102H, D105N, -106V, -107S, N108I, N111P, S115T, -116S, -117R, -118P, -119V, -120E, M121E, K123M, G124-, E125-, M126-, I133S, S136A, M137L, E144Q, L147V, V153I, T154E, P155E, -159S, I166R, V173I, T174K, S181T, K203E, K204T, V227I, E239K, E240Q, E241G, V243K, I244L, E247A, D251N, V255N, I257L, N261D, S263T, E265V, S272N, A288V, W290Y, A291T, R307G, T308K, K309E, N311K, K315S, Q316K, -326E, I332A, N334K, S336P, V344I, S347T, G351A, -368S, -370S, -379I, D384I, I395F, G401R, K412S, Q414P, L424M, N433-, N435K, N446D, K482R; gp41: M24I, T96S, T101S, D125E, D129G, T133S, Q147L, A151E, S157N, N160S, I182V, V189T, P216H, R218E, E223G, E228G, D230G, G235R, L254I, L265S, V267A, V301I, V325F, F340A, L345Q; nef: A15R, V33A, E38D, R39Q, -50A, -51N, A54D, C55I, V56A, E63D, T80D, V85I, K92R, K94E, W102H, I133V, V153I, K155E, N157Q, E158K, G159-, N162S, C163S, Q170L, V182M, R188N, L198M, D205N; p17: K30R, E55G, V82I, K113N, S126N, V128A, Y132F; p2: T9-, -11A, I13V; p24: L6M, I15L, V27I, S41T, L83V, N183G, V191I, P207G; p6: I21T, S23P, P24S, -32E, -35K, N47S; p7: R11K, R41K, D48E; pro: N61S, M89L; rev: E11D, L18I, Q36R, R53Q, T68S, P72H, Q101E, T108A; tat: K19R, F32M, A58P, T64N, P81T, G83S; vif: V31I, F44Y, T63V, L64I, I87V, R93K, R95S, I109Q, N122S, H127Q, S130R, P131H, D134E, I159G, H183R, N190S; vpr: E21S, N28S, H45Y, G94S; vpu: L7I, V10A, A15V, I17L, T24S, E60D, L61A, A62E, M67L, -69D, -71M, -72G, -73P, -74L, -75I, -76I, -77G, -78D, -79I, -80N, -81N"}}}]}, {"name": "CRF71_BF1_NODE_0000004", "node_attrs": {"div": 0.12967, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G15-", "A16-", "G224A", "-305A", "A401G", "A562G", "G703A", "A704C", "-712G", "A747C", "G1022A", "G1279A", "G1552A", "C1656A", "C1692A", "A1733G", "A1742G", "C1756A", "C2281T", "C2296T", "G2428A", "T2449C", "C2605T", "A2755G", "G3211A", "T3551C", "A3684G", "G3695A", "A4150G", "A4376G", "A4767G", "G5140A", "A5432G", "C5490T", "A5622C", "G5700A", "C5727T", "A5734G", "-6170T", "-6171G", "-6172G", "-6180C", "A6204G", "-6211G", "-6221A", "G6269A", "G6403A", "A6929T", "-6959A", "-6962A", "-6964T", "-6966A", "-6977A", "-6983T", "-6984C", "-6985A", "-7005A", "-7009A", "G7197A", "A7375G", "T7444C", "G7689A", "C7869T", "G7883A", "A7929G", "G8173A", "G8242A", "A8255G", "G8276A", "A8288T", "G8385A", "C8648-"], "INT": ["I201V"], "RT-p66": ["K530R", "A534T"], "gp120": ["-106W", "T359S", "R448K"], "gp41": ["H209R", "I318V", "V325I", "I329F", "F340L"], "nef": ["A15T"], "p17": ["K76R", "G123D"], "p6": ["P5T", "I21M", "S23-", "-26Q"], "p7": ["R29K"], "rev": ["Q74H", "V109I"], "tat": ["K19R", "T74A"], "vif": ["K61E", "G185E"], "vpu": ["I43V", "E60D", "L61A", "A62E", "A63E", "-70E", "-71M", "-72G", "-73P", "-74L", "-76L", "-78D", "-81N"]}, "labels": {"aa": "INT: I201V; RT-p66: K530R, A534T; gp120: -106W, T359S, R448K; gp41: H209R, I318V, V325I, I329F, F340L; nef: A15T; p17: K76R, G123D; p6: P5T, I21M, S23-, -26Q; p7: R29K; rev: Q74H, V109I; tat: K19R, T74A; vif: K61E, G185E; vpu: I43V, E60D, L61A, A62E, A63E, -70E, -71M, -72G, -73P, -74L, -76L, -78D, -81N"}}, "children": [{"name": "KJ849769", "node_attrs": {"div": 0.1754, "accession": "KJ849769", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE064"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G1T", "G2T", "T7A", "G11A", "T12C", "A14-", "C17-", "G20A", "-22T", "-26A", "-27G", "-28T", "-29C", "-30T", "-31G", "-32A", "-33G", "-34G", "-35G", "-36A", "-37T", "-38C", "-39T", "-41T", "G42A", "C44T", "-45T", "-46A", "-47C", "G51-", "G52-", "G53-", "C54-", "A55-", "C56-", "A57-", "C58-", "A59-", "C60-", "T61-", "A62-", "C63-", "T64-", "T65-", "G66-", "-68G", "-69A", "-70G", "-71T", "-72C", "-73A", "-74A", "-75A", "-76C", "-77A", "-78A", "-79C", "-80C", "-81G", "-82G", "-83G", "-84C", "-85A", "-86C", "-87A", "-88C", "-89A", "-90C", "-91T", "-92A", "-93C", "-94T", "-95T", "-96G", "-97A", "G121T", "C151T", "T156G", "T165A", "C227A", "C287A", "T288C", "T308G", "A424G", "C462A", "A485G", "G579A", "G607A", "G644A", "A674C", "T718C", "G743A", "G770A", "A785G", "G818A", "G906A", "G908A", "A920G", "T936C", "C950T", "A977G", "T992G", "G1019A", "C1060A", "G1067T", "A1073G", "A1115G", "T1181C", "C1187T", "A1190C", "G1232A", "A1263T", "A1293T", "T1299A", "T1334C", "A1337G", "G1388A", "A1418G", "T1427A", "-1450A", "-1451T", "-1452C", "-1453C", "-1454A", "-1455A", "-1457T", "T1478C", "G1487A", "A1500G", "A1538G", "G1543A", "A1545T", "C1571T", "A1580G", "G1588A", "A1592G", "C1613T", "C1615A", "G1661A", "C1680A", "C1706T", "G1726A", "G1731A", "T1752G", "G1763A", "A1774C", "T1796C", "A1808T", "T1868C", "A1993C", "C2005T", "G2023A", "C2211T", "A2212G", "A2221G", "G2311A", "C2326T", "C2383T", "T2393C", "G2524A", "T2542C", "A2566G", "T2620C", "C2626A", "C2635T", "G2665A", "T2672C", "G2686A", "C2694T", "A2710G", "G2788A", "G2847A", "A2878G", "A2884G", "T2917C", "A2918C", "G2921A", "T2922C", "A2937G", "G2956A", "T2996C", "G3010A", "T3049C", "T3059A", "C3075T", "G3085A", "G3094A", "A3097T", "C3224A", "A3226G", "A3230T", "A3247G", "G3250A", "C3266T", "C3275T", "T3292C", "G3307A", "C3319T", "A3367G", "T3376C", "A3448G", "A3451T", "A3454G", "A3487G", "C3533T", "A3535T", "T3559C", "A3562T", "A3682T", "A3719G", "G3737A", "C3763T", "T3778C", "A3808C", "A3825G", "T3826C", "G3836A", "G4051A", "A4107C", "G4145A", "C4146A", "A4148G", "T4153C", "C4162T", "A4189G", "C4321T", "G4388A", "A4399G", "T4412C", "A4455T", "G4573A", "T4579A", "G4597A", "C4643T", "C4691T", "T4717A", "G4737A", "G4764A", "C4771A", "T4776A", "G4864A", "T4938A", "A4966G", "T4976C", "A5023G", "T5062G", "T5073C", "T5081C", "A5161G", "G5167A", "G5185A", "A5187G", "T5188A", "T5196G", "C5221A", "C5237T", "T5260C", "T5293C", "T5314C", "A5352G", "A5360G", "G5363A", "G5385A", "G5433A", "A5462G", "G5463A", "T5484G", "C5559T", "G5561A", "G5599T", "C5620G", "A5621T", "C5651T", "A5655T", "A5656G", "T5677A", "C5688A", "A5694G", "A5706T", "A5746C", "G5747T", "A5748C", "T5766C", "T5788C", "G5830A", "A5842T", "A5861-", "C5862-", "A5863-", "G5866T", "C5869A", "T5871G", "C5884A", "A5946G", "T5951C", "T5956C", "G5963A", "C5964A", "G5972A", "A6024T", "A6030G", "A6031G", "A6076T", "G6088A", "T6100C", "C6110G", "C6145T", "-6175T", "C6187T", "A6189G", "C6190T", "G6195A", "G6203A", "A6207T", "A6209G", "-6210A", "G6232A", "T6238C", "G6260A", "A6261G", "T6271G", "G6274T", "G6275C", "T6276C", "G6280A", "T6307A", "T6325A", "A6326G", "A6327G", "T6328G", "A6329G", "A6330G", "T6373C", "G6379A", "C6446A", "A6465C", "C6477A", "C6482T", "A6489C", "G6533A", "C6545A", "A6576G", "A6616G", "A6617G", "A6639C", "A6646T", "C6667T", "A6668G", "T6676C", "A6734C", "T6735A", "C6752A", "G6774A", "A6776G", "A6785G", "A6791G", "A6797G", "A6802C", "G6806A", "T6807G", "T6810A", "-6835A", "T6849C", "T6856A", "C6857A", "A6859C", "T6885C", "T6928C", "A6944C", "-6956G", "-6957G", "T6958G", "-6960A", "-6963A", "-6965C", "-6967G", "A6986G", "-6990G", "C6993A", "-6996G", "-6997A", "-6998A", "-6999C", "-7000A", "-7001A", "-7002G", "G7004A", "-7006T", "C7012A", "C7045T", "A7102C", "T7114C", "G7123A", "A7127T", "A7133G", "C7134T", "A7152G", "C7153T", "A7155C", "A7158G", "G7162T", "A7163G", "C7164A", "T7165A", "C7170T", "G7181A", "G7182C", "A7249C", "G7319A", "G7426A", "C7429T", "G7459A", "C7486T", "G7495A", "A7553C", "C7579T", "C7590A", "C7631A", "C7701A", "G7712A", "A7714T", "A7747G", "A7750G", "C7801A", "A7819G", "T7852G", "T7932C", "A7943C", "G7944A", "T7968C", "G7987C", "A8000G", "G8006A", "G8008A", "C8051A", "C8065T", "G8070C", "C8080A", "A8104G", "G8130A", "G8144A", "C8145T", "T8159G", "C8165A", "A8170G", "G8204A", "A8262C", "C8293A", "A8311C", "G8404A", "C8406A", "T8426A", "G8446A", "A8458C", "A8459C", "A8461G", "T8462C", "T8477C", "C8485A", "A8497G", "T8509A", "C8510T", "G8513C", "C8514T", "T8515C", "A8516C", "G8517-", "A8518-", "A8519-", "G8520-", "C8521-", "A8522-", "C8523-", "A8524-", "A8525-", "G8526-", "A8527-", "G8528-", "G8529-", "A8530-", "G8531-", "G8532-", "A8533-", "G8534-", "G8535-", "A8536-", "G8537-", "T8539C", "C8548A", "A8549G", "A8553-", "G8554-", "A8555-", "C8556-", "C8557-", "T8558-", "C8559-", "A8560-", "G8561-", "G8562-", "T8563-", "A8564-", "C8565-", "C8566-", "T8567-", "T8568-", "T8569-", "A8570-", "A8571-", "G8572-", "A8573-", "C8574-", "C8575-", "A8576-", "A8577-", "T8578-", "G8579-", "A8580-", "C8581-", "T8582-", "T8583-", "A8584-", "C8585-", "A8586-", "A8587-", "G8588-", "G8589-", "G8590-", "A8591-", "G8592-", "C8593-", "T8594-", "T8596-", "A8597-", "G8598-", "A8599-", "T8600-", "C8601-", "T8602-", "T8603-", "A8604-", "G8605-", "C8606-", "C8607-", "A8608-", "C8609-", "T8610-", "T8611-", "T8612-", "T8613-", "T8614-", "A8615-", "A8616-", "A8617-", "A8618-", "G8619-", "A8620-", "A8621-", "A8622-", "A8623-", "G8624-", "G8625-", "G8626-", "G8627-", "G8628-", "G8629-", "A8630-", "C8631-", "T8632-", "G8633-", "G8634-", "A8635-", "A8636-", "G8637-", "G8638-", "G8639-", "C8640-", "T8641-", "A8642-", "A8643-", "T8644-", "T8645-", "T8646-", "A8647-", "T8649-", "C8650-", "C8651-", "C8652-", "A8653-", "A8654-", "A8655-", "A8656-", "A8657-", "A8658-", "G8659-", "A8660-", "C8661-", "A8662-", "A8663-", "G8664-", "A8665-", "T8666-", "A8667-", "T8668-", "C8669-", "C8670-", "T8671-", "T8672-", "G8673-", "A8674-", "T8675-", "C8676-", "T8677-", "G8678-", "T8679-", "G8680-", "G8681-", "G8682-", "T8683-", "C8684-", "T8685-", "A8686-", "C8687-", "C8688-", "A8689-", "C8690-", "A8691-", "C8692-", "A8693-", "C8694-", "A8695-", "A8696-", "G8697-", "G8698-", "C8699-", "T8700-", "A8701-", "C8702-", "T8703-", "T8704-", "C8705-", "C8706-", "C8707-", "T8708-", "G8709-", "A8710-", "T8711-", "T8712-", "G8713-", "G8714-", "C8715-", "A8716-", "G8717-", "A8718-", "A8719-", "C8720-", "T8721-", "A8722-", "C8723-", "A8724-", "C8725-", "A8726-", "C8727-", "C8728-", "A8729-", "G8730-", "G8731-", "G8732-", "C8733-", "C8734-", "A8735-", "G8736-", "G8737-", "G8738-", "A8739T", "C8741G"], "INT": ["E11D", "A21T", "K111T", "A124N", "T125A", "A205T", "I208M", "Y227F"], "RT-p51": ["T39M", "D177E", "T200I", "S251N", "K275Q", "V276T", "K281R", "S322T", "A327V", "Q334H", "L377M", "S379C"], "RT-p66": ["T39M", "D177E", "T200I", "S251N", "K275Q", "V276T", "K281R", "S322T", "A327V", "Q334H", "L377M", "S379C", "K452N", "Q480Y", "E529D", "I542V", "V548I"], "gp120": ["T3D", "N5W", "L6-", "K31R", "Y33H", "A37K", "V40I", "K57I", "E59G", "E74D", "Q86E", "-107N", "-118R", "-119I", "-120E", "M126I", "D139K", "K140N", "V141P", "V153-", "T154-", "P155-", "I156-", "D157-", "N158-", "L198I", "K204T", "T208K", "P210S", "K212T", "V227I", "L231M", "E241G", "E247D", "E262A", "S272G", "E294Q", "Q300K", "R307K", "T308A", "N311D", "T313A", "K315E", "Q316H", "V318S", "-326K", "I332T", "N334K", "Q335N", "V344A", "N364H", "-368G", "-379N", "-380Q", "-381T", "-382K", "-383S", "R416S", "I425L", "T427V", "N433S", "N434T", "N435S", "T436N", "T437E", "T439I", "G443T"], "gp41": ["A6T", "I84L", "T96N", "D109N", "Q110L", "T133N", "E137N", "N166K", "V194M", "L210P", "R214Q", "I222T", "E228D", "T233G", "G235R", "S256T", "R276H", "A281I", "W286G", "L288I", "V301I", "E320A"], "nef": ["R21K", "D28E", "R35Q", "R39T", "H40R"], "p1": ["H9N"], "p17": ["K30R", "V82I", "K113N", "V128A"], "p2": ["T9P"], "p24": ["V59I", "H87Q", "M96I", "T110N", "Q112H", "T178S", "T188S", "L190M"], "p6": ["L1I", "G16E", "G18R", "P25A", "-32T"], "p7": ["I12V", "L24M", "R26K", "N27Y", "R41K", "T50N"], "pro": ["T4S", "E65D"], "rev": ["T15I", "V16I", "E32A", "E47Q", "H51R", "R53Q", "A54T", "T68E", "L73F", "L78I", "S99N", "V104G", "S106Y", "T108A"], "tat": ["K29R", "S62N", "S75P", "R78S", "G79R", "S87P"], "vif": ["R4K", "F44Y", "V51I", "E60K", "A62D", "L64I", "R93K", "S118T", "H127R", "Q146R", "I159R", "H192R"], "vpr": ["N28R", "V31G", "H45Y", "I83V", "G94S"], "vpu": ["Q5V", "A15V", "I17V", "R47L", "M67L", "-75I", "-77G", "-79F", "-80N"]}, "labels": {"aa": "INT: E11D, A21T, K111T, A124N, T125A, A205T, I208M, Y227F; RT-p51: T39M, D177E, T200I, S251N, K275Q, V276T, K281R, S322T, A327V, Q334H, L377M, S379C; RT-p66: T39M, D177E, T200I, S251N, K275Q, V276T, K281R, S322T, A327V, Q334H, L377M, S379C, K452N, Q480Y, E529D, I542V, V548I; gp120: T3D, N5W, L6-, K31R, Y33H, A37K, V40I, K57I, E59G, E74D, Q86E, -107N, -118R, -119I, -120E, M126I, D139K, K140N, V141P, V153-, T154-, P155-, I156-, D157-, N158-, L198I, K204T, T208K, P210S, K212T, V227I, L231M, E241G, E247D, E262A, S272G, E294Q, Q300K, R307K, T308A, N311D, T313A, K315E, Q316H, V318S, -326K, I332T, N334K, Q335N, V344A, N364H, -368G, -379N, -380Q, -381T, -382K, -383S, R416S, I425L, T427V, N433S, N434T, N435S, T436N, T437E, T439I, G443T; gp41: A6T, I84L, T96N, D109N, Q110L, T133N, E137N, N166K, V194M, L210P, R214Q, I222T, E228D, T233G, G235R, S256T, R276H, A281I, W286G, L288I, V301I, E320A; nef: R21K, D28E, R35Q, R39T, H40R; p1: H9N; p17: K30R, V82I, K113N, V128A; p2: T9P; p24: V59I, H87Q, M96I, T110N, Q112H, T178S, T188S, L190M; p6: L1I, G16E, G18R, P25A, -32T; p7: I12V, L24M, R26K, N27Y, R41K, T50N; pro: T4S, E65D; rev: T15I, V16I, E32A, E47Q, H51R, R53Q, A54T, T68E, L73F, L78I, S99N, V104G, S106Y, T108A; tat: K29R, S62N, S75P, R78S, G79R, S87P; vif: R4K, F44Y, V51I, E60K, A62D, L64I, R93K, S118T, H127R, Q146R, I159R, H192R; vpr: N28R, V31G, H45Y, I83V, G94S; vpu: Q5V, A15V, I17V, R47L, M67L, -75I, -77G, -79F, -80N"}}}, {"name": "KJ849759", "node_attrs": {"div": 0.17903000000000002, "accession": "KJ849759", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE008"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T3G", "C4A", "G10A", "C40-", "G43T", "-45A", "-46C", "-47A", "-49A", "-50A", "T100C", "T155G", "A167G", "G215A", "A303G", "G369A", "G379A", "A386G", "A430G", "A455G", "A491G", "T534G", "A566C", "G607T", "A673G", "G677A", "C731T", "T748A", "G755A", "G771C", "A803T", "T852A", "T858C", "C879T", "A880C", "A881T", "C950A", "G989A", "C1013T", "A1089G", "C1094T", "G1109A", "A1115C", "C1133T", "A1157G", "T1166C", "A1176G", "G1192A", "T1253A", "G1268A", "G1277A", "A1289G", "T1325C", "A1329G", "A1339G", "G1394A", "A1400G", "G1421A", "-1444T", "-1445A", "-1446A", "C1447A", "A1448T", "-1457A", "-1458A", "-1459C", "-1460T", "G1498A", "T1502A", "G1503A", "T1514C", "A1525G", "C1535T", "A1536C", "T1547C", "A1562G", "A1589G", "C1598T", "A1642G", "T1646G", "A1657G", "A1670C", "A1709G", "G1736A", "A1774G", "C1826T", "C1833A", "G1841A", "A1879G", "A1907G", "G1918A", "A1951G", "T1978G", "A1984G", "T2035C", "A2059G", "T2080A", "G2155A", "G2173A", "A2215C", "A2293G", "G2411A", "C2420T", "G2447A", "T2464A", "C2527T", "A2693G", "G2725A", "T2735C", "T2806C", "A2830G", "C2839A", "C2885T", "G2925A", "A2984G", "G3004A", "C3038A", "A3080C", "T3132G", "T3133C", "A3192G", "A3200G", "T3225A", "G3264A", "A3435G", "A3478G", "G3544A", "T3545C", "T3567C", "A3586G", "A3637G", "G3651A", "A3670G", "A3682G", "G3686A", "C3688A", "G3694A", "C3712T", "T3754C", "G3755A", "T3820C", "C3823T", "A3880G", "G3907A", "A3988G", "T3991C", "A4033G", "G4177A", "A4268G", "C4428T", "C4462A", "G4516A", "A4552G", "C4569T", "C4667T", "T4670C", "T4712C", "T4730C", "A4740G", "A4745T", "A4782G", "G4799C", "C4841A", "C4857A", "A4858G", "G4865A", "C4890A", "T4891C", "T4916C", "T4952A", "A4956T", "T4969G", "T4988A", "T5028C", "G5030A", "A5037G", "A5039G", "T5047C", "A5049C", "A5088C", "T5147C", "T5228C", "A5236G", "G5255A", "A5282T", "A5284G", "A5285G", "G5289A", "G5328A", "A5336G", "A5355C", "G5370A", "A5397G", "T5407C", "G5408A", "T5424C", "T5448A", "C5451T", "C5457T", "G5468C", "T5471A", "G5482A", "T5483G", "T5487C", "A5491C", "A5493G", "A5545G", "A5556G", "G5557A", "A5558G", "A5560G", "T5576C", "A5594G", "G5599A", "A5612C", "C5620T", "T5641C", "G5644A", "C5654G", "T5686A", "A5709G", "G5781T", "A5787T", "T5788G", "T5789C", "G5790A", "C5792A", "A5793G", "C5795A", "C5797T", "T5799G", "G5801C", "G5802A", "A5804C", "A5806G", "T5807C", "G5808A", "G5809A", "G5810T", "G5811T", "-5812G", "-5813G", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5829G", "G5837A", "T5841C", "A5846T", "A5856G", "T5860C", "G5866A", "G5867A", "C5917T", "A5957G", "A6009G", "A6022G", "G6029A", "A6065G", "G6070A", "G6088T", "C6115T", "C6116T", "A6173G", "A6174G", "-6175G", "T6178C", "A6186G", "C6192A", "A6200G", "G6201A", "C6202A", "G6205A", "-6210T", "A6215-", "T6216-", "G6217-", "A6222G", "A6251G", "A6254C", "C6255A", "A6259C", "A6267G", "T6276A", "C6293T", "T6295G", "G6314A", "T6315C", "A6332G", "A6333C", "A6336G", "T6337C", "G6349A", "T6385C", "T6409C", "A6455G", "A6456G", "T6457A", "G6463A", "G6466A", "T6472A", "C6482A", "C6483A", "A6490C", "A6553G", "C6595A", "T6602A", "G6604A", "T6610C", "T6618A", "C6619T", "C6632T", "T6637A", "G6638A", "G6647A", "A6664G", "A6684G", "G6697-", "-6703A", "C6712T", "G6714A", "T6722G", "G6723C", "G6724A", "G6725A", "A6728G", "C6729G", "C6766T", "A6767C", "A6779G", "A6802G", "T6815C", "A6822C", "-6835T", "C6850T", "C6862T", "A6868G", "G6869A", "G6871A", "A6877G", "A6936C", "-6956A", "-6957A", "-6960C", "-6963C", "-6965G", "-6967A", "-6968A", "-6969G", "-6970G", "-6971A", "-6972G", "-6973T", "A6978G", "-6980A", "-6981G", "-6982G", "A6989-", "C6991-", "A6992-", "C6993-", "T6994-", "G6995-", "T7003-", "-7006C", "C7008T", "C7020G", "G7058A", "G7061A", "G7062A", "A7063G", "T7075C", "A7088C", "G7145A", "A7149G", "A7151G", "C7153G", "A7154G", "A7155G", "C7156G", "A7160G", "G7162A", "C7174T", "C7201T", "A7239G", "G7276A", "A7309G", "A7322C", "A7398T", "G7423A", "T7433C", "A7456G", "C7463A", "A7507G", "A7522G", "A7533G", "A7589G", "T7606C", "T7626A", "A7629G", "T7630G", "T7642A", "G7660A", "G7668A", "A7669G", "C7699T", "A7706C", "A7729G", "A7747T", "G7777A", "A7791G", "A7798C", "C7801T", "A7840T", "A7847G", "A7873G", "G7885A", "A7915G", "G7918A", "C7939T", "A7955G", "A7971G", "A7974G", "A7986G", "G7997A", "G8001C", "C8005T", "C8010A", "T8013C", "C8047T", "T8060A", "G8070T", "C8078A", "T8100C", "A8105G", "A8163G", "C8167T", "T8218C", "T8257C", "A8262G", "A8275C", "C8293T", "A8308G", "A8338G", "A8360C", "A8370G", "G8402A", "G8453A", "A8458G", "A8484-", "C8485-", "-8490G", "-8491C", "C8495T", "C8503A", "T8567C", "T8568C", "A8571C", "G8588A", "-8595T", "A8597T", "T8600C", "A8647G", "-8648G", "A8654G", "C8720T", "T8740C", "A8746G", "T8747G", "G8774A", "G8795A", "A8805G", "G8814A", "G8817A", "G8818A", "A8819G", "A8827G", "T8829A", "G8834A", "T8864G", "C8868G", "G8888A", "G8894A", "A8909G", "C8911G", "C8921T", "C8934T", "G8955A", "C8967T", "G9016A", "A9099-", "G9100-", "A9101-", "C9102-", "G9105A", "C9141G", "C9143A", "A9144G", "C9155A", "A9158T"], "INT": ["S17N", "I165V", "T218I", "D229E", "A265V"], "RT-p51": ["E40D", "V106I", "V118I", "D123E", "T200A", "F214L", "D248E", "R277K", "T297A", "H315N", "I329L", "F346C", "K366R", "T369A", "L377Q", "R390K"], "RT-p66": ["E40D", "V106I", "V118I", "D123E", "T200A", "F214L", "D248E", "R277K", "T297A", "H315N", "I329L", "F346C", "K366R", "T369A", "L377Q", "R390K", "N447S", "L491S", "S519N", "V531I", "A554T"], "gp120": ["N1S", "T35A", "N52S", "E59K", "N71D", "M72I", "E78D", "-107G", "N111S", "T112N", "-116E", "-117G", "-118K", "-119M", "M121-", "K123R", "I133V", "T134H", "S136D", "K138R", "D139N", "V141E", "P155Q", "D157K", "N158E", "-159D", "-160N", "-161N", "N201G", "N206K", "P210K", "K212N", "S250T", "V255N", "N261K", "E262K", "E265K", "K277R", "M281I", "R287K", "A291T", "T292G", "E294I", "I305L", "K309E", "K319I", "E323A", "-328N", "G339R", "Q361P", "-370T", "-371T", "-372E", "-373S", "-374T", "-375R", "-376R", "-377S", "-378N", "T385I", "P389R", "V402I", "G403K", "K412Q", "G431S", "N432S", "N433E", "N434G", "T436E", "K462R"], "gp41": ["M7L", "Q32L", "L54M", "K77R", "T96A", "L108Q", "D109G", "D113E", "R122K", "I135L", "E148D", "D163G", "I182V", "V194I", "R218G", "E223G", "E224G", "E228G", "D232N", "P236Q", "L237S", "C253S", "S256I", "R259S", "I266T", "T268A", "N287S", "E320G", "R324S"], "nef": ["I10V", "M20I", "T48-", "A49-", "-50A", "-51N", "A54D", "V85F", "I133T", "Y135W", "K155E", "E158K", "G159K", "N162S", "C163S", "Q170L", "D174E", "P176A", "R188S", "A190G", "D205N"], "p1": ["K4R", "I5M", "H9S"], "p17": ["E12K", "R15K", "K32R", "S67A", "K91M", "K113R"], "p2": ["A7V"], "p24": ["L6H", "A14P", "S41T", "Q50S", "S120G", "E128D", "S149G", "R154K", "T200A", "K203R"], "p6": ["P25S", "-32S", "Q52K"], "p7": ["R11K", "V13I", "K20R"], "pro": ["T12K", "V15I", "N37D", "D60E", "I62M"], "rev": ["K14R", "T15A", "F21L", "P31S", "Q36R", "R50K", "R53W", "P67S", "T68A", "V71E", "P77Q", "D86S", "P107S"], "tat": ["W11Q", "C31S", "F32Y", "V36S", "I39L", "R57G", "D61S", "S62G", "V67A", "P77L"], "vif": ["S52G", "I66V", "Q91R", "L102T", "N122K", "I124L", "I128R", "D134E", "T151A", "I154T", "T155P", "K168Q"], "vpr": ["Y15H", "G51R", "I60L", "I61V", "R62K", "G75R", "I84L", "A89T"], "vpu": ["Q2P", "Q5Y", "V13I", "A16G", "T24S", "L27I", "E58D", "M67A", "G68I", "-69G", "-75V", "-77E", "-79I", "-80I"]}, "labels": {"aa": "INT: S17N, I165V, T218I, D229E, A265V; RT-p51: E40D, V106I, V118I, D123E, T200A, F214L, D248E, R277K, T297A, H315N, I329L, F346C, K366R, T369A, L377Q, R390K; RT-p66: E40D, V106I, V118I, D123E, T200A, F214L, D248E, R277K, T297A, H315N, I329L, F346C, K366R, T369A, L377Q, R390K, N447S, L491S, S519N, V531I, A554T; gp120: N1S, T35A, N52S, E59K, N71D, M72I, E78D, -107G, N111S, T112N, -116E, -117G, -118K, -119M, M121-, K123R, I133V, T134H, S136D, K138R, D139N, V141E, P155Q, D157K, N158E, -159D, -160N, -161N, N201G, N206K, P210K, K212N, S250T, V255N, N261K, E262K, E265K, K277R, M281I, R287K, A291T, T292G, E294I, I305L, K309E, K319I, E323A, -328N, G339R, Q361P, -370T, -371T, -372E, -373S, -374T, -375R, -376R, -377S, -378N, T385I, P389R, V402I, G403K, K412Q, G431S, N432S, N433E, N434G, T436E, K462R; gp41: M7L, Q32L, L54M, K77R, T96A, L108Q, D109G, D113E, R122K, I135L, E148D, D163G, I182V, V194I, R218G, E223G, E224G, E228G, D232N, P236Q, L237S, C253S, S256I, R259S, I266T, T268A, N287S, E320G, R324S; nef: I10V, M20I, T48-, A49-, -50A, -51N, A54D, V85F, I133T, Y135W, K155E, E158K, G159K, N162S, C163S, Q170L, D174E, P176A, R188S, A190G, D205N; p1: K4R, I5M, H9S; p17: E12K, R15K, K32R, S67A, K91M, K113R; p2: A7V; p24: L6H, A14P, S41T, Q50S, S120G, E128D, S149G, R154K, T200A, K203R; p6: P25S, -32S, Q52K; p7: R11K, V13I, K20R; pro: T12K, V15I, N37D, D60E, I62M; rev: K14R, T15A, F21L, P31S, Q36R, R50K, R53W, P67S, T68A, V71E, P77Q, D86S, P107S; tat: W11Q, C31S, F32Y, V36S, I39L, R57G, D61S, S62G, V67A, P77L; vif: S52G, I66V, Q91R, L102T, N122K, I124L, I128R, D134E, T151A, I154T, T155P, K168Q; vpr: Y15H, G51R, I60L, I61V, R62K, G75R, I84L, A89T; vpu: Q2P, Q5Y, V13I, A16G, T24S, L27I, E58D, M67A, G68I, -69G, -75V, -77E, -79I, -80I"}}}]}]}]}, {"name": "CRF71_BF1_NODE_0000005", "node_attrs": {"div": 0.12638, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C48-", "C151T", "A455G", "A605G", "A689C", "C713-", "G1016A", "C1091T", "A1278G", "G1472A", "A1493G", "T1547C", "C1749T", "T1752C", "A2241G", "G2422A", "G2498A", "A2518G", "C2671T", "A2715C", "T2791C", "A2794G", "G2914A", "C3067T", "T3223C", "T3492C", "C3542A", "T3602C", "A3616G", "T4234C", "A4498G", "T4702C", "T4988C", "A5037G", "C5050A", "T5062G", "A5187C", "G5212A", "T5356C", "A5446C", "A5805C", "G5853A", "A5856G", "A5865G", "T6160C", "-6170G", "-6171C", "-6212A", "-6213C", "-6214A", "A6215G", "-6221G", "A6222G", "G6275A", "A6304T", "A6320C", "C6370A", "G6392A", "T6395A", "A6617G", "C6777A", "T6807C", "T6958-", "A7152G", "G7182C", "G7256A", "A7313T", "G7459A", "G7633T", "C7801T", "G7807A", "G7871A", "T8426A", "T8567G", "C8648T", "T8711C"], "RT-p51": ["K49R", "V135I", "E207A"], "RT-p66": ["K49R", "V135I", "E207A", "V466A", "Q483K"], "gp120": ["S115T", "-117G", "-119N", "S136D", "K138N", "V141K", "K150N", "P155Q", "I156L", "V180I", "T308E", "V318A", "K319I", "N369-", "D384-", "T437N", "G443A", "V468I"], "gp41": ["I4L", "V190I"], "nef": ["D28E", "A49N"], "p17": ["S126-"], "p24": ["N183G"], "p6": ["-32K"], "vif": ["T155K", "I159R"], "vpr": ["N28T", "I84T", "Q85P"], "vpu": ["T24S", "A65G", "E66D"]}, "labels": {"aa": "RT-p51: K49R, V135I, E207A; RT-p66: K49R, V135I, E207A, V466A, Q483K; gp120: S115T, -117G, -119N, S136D, K138N, V141K, K150N, P155Q, I156L, V180I, T308E, V318A, K319I, N369-, D384-, T437N, G443A, V468I; gp41: I4L, V190I; nef: D28E, A49N; p17: S126-; p24: N183G; p6: -32K; vif: T155K, I159R; vpr: N28T, I84T, Q85P; vpu: T24S, A65G, E66D"}}, "children": [{"name": "KT427816", "node_attrs": {"div": 0.16810999999999998, "accession": "KT427816", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_SP026"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T201A", "C227A", "A263G", "G290A", "A374G", "T396C", "A417C", "A419G", "C525T", "A571T", "A585G", "C586T", "C587T", "C590T", "G612C", "T614G", "G629A", "C662A", "A663G", "G683A", "A711-", "A812G", "G818A", "A860G", "C879A", "A880C", "C944T", "G989A", "T992G", "C1013T", "G1019A", "T1028G", "C1060A", "T1143C", "C1220T", "A1241G", "A1263T", "A1271T", "A1339G", "A1359T", "G1419A", "G1421A", "G1443C", "-1444T", "-1445A", "-1446A", "C1447A", "A1448T", "-1457A", "-1458A", "-1459C", "-1460T", "A1461G", "A1467G", "A1474G", "A1479G", "G1495A", "T1501A", "T1514C", "G1543A", "A1595G", "A1601G", "A1642G", "C1656T", "A1673G", "T1676C", "G1685A", "G1736A", "G1737C", "A1770G", "C1775G", "C1782G", "T1783C", "G1784A", "G1841A", "T1854A", "A1855G", "C1903A", "A1932G", "A1979G", "T1986C", "G2065A", "C2105A", "C2149T", "A2198T", "C2211A", "A2212T", "C2296T", "A2314G", "G2362A", "G2411A", "A2459G", "T2464G", "G2524A", "G2530A", "G2539A", "T2542G", "C2596T", "C2605A", "G2704A", "A2710G", "A2716T", "C2723T", "A2762G", "A2920G", "T2944C", "G2947A", "C2968T", "C2985A", "A3001G", "C3023T", "A3031G", "A3097C", "G3100A", "A3162G", "G3168A", "C3275T", "A3370G", "T3431G", "A3457G", "G3477A", "A3674G", "A3675G", "A3682G", "C3756A", "A3768G", "G3814A", "G3891A", "C3908T", "C3922A", "T3943C", "T4042C", "G4051A", "G4060A", "A4109G", "A4182G", "G4186A", "A4338G", "A4433C", "C4471T", "A4543G", "A4577C", "G4583C", "G4622A", "A4664G", "T4701G", "G4735A", "A4739G", "A4745G", "A4751G", "A4768C", "A4773G", "C4800T", "G4802A", "C4803A", "C4841T", "G4856A", "G4860A", "G4862A", "G4864A", "G4881A", "A4882G", "C4889T", "C4902A", "A4911G", "A4913G", "T4952A", "T4967C", "T4976C", "T5003C", "A5058C", "A5063G", "T5084G", "G5143A", "C5221T", "G5233A", "C5237T", "G5246A", "A5248T", "T5251A", "G5275A", "T5286C", "T5327C", "A5355T", "C5356A", "T5359C", "G5362A", "C5552A", "C5559T", "G5575A", "C5581T", "G5589A", "T5600C", "A5601T", "C5602T", "C5620A", 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"A6833-", "-6835T", "A6854C", "T6856G", "A6858C", "T6925C", "A6932T", "T6976-", "-6980T", "-6981G", "-6982G", "-6985A", "-6990A", "-6996G", "-6997A", "-6998G", "-6999G", "-7000A", "-7001G", "-7002A", "-7005G", "-7006A", "-7009T", "G7056A", "C7084T", "A7089G", "A7102C", "G7126A", "A7148G", "C7159T", "A7160G", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "A7231G", "C7264T", "G7390A", "G7440A", "A7504G", "G7508A", "C7547A", "A7620G", "C7631T", "G7660A", "G7688A", "A7741G", "T7748C", "G7790A", "A7791G", "G7831A", "A7847G", "T7864C", "C7869T", "A7903T", "G7987C", "C8005G", "C8010G", "T8013C", "C8048T", "C8065T", "A8076G", "G8079A", "A8099G", "T8103C", "A8105G", "C8145T", "A8152G", "A8170T", "T8176C", "G8212A", "T8277C", "A8288C", "A8297G", "G8317A", "G8323T", "T8333C", "A8341G", "G8402A", "C8412T", "G8424A", "A8425C", "G8432A", "G8436C", "A8441T", "G8446A", "A8455G", "A8458G", "G8476A", "A8497G", "C8500A", "C8510T", "A8525G", "G8531T", "A8571C", "G8588A", "-8595T", "A8643G", "A8656G", "C8699T", "C8727T", "T8740C", "T8747C", "A8754T", "C8755G", "G8762A", "A8796G", "C8831T", "A8837G", "T8855A", "T8864G", "A8893G", "G8905T", "A8909G", "A8917G", "C8971A", "T9079C"], "INT": ["S17N", "S39N", "T112A", "K136R", "K188R", "I220L", "I268L", "D270H", "G283S"], "RT-p51": ["P4T", "T35S", "T39N", "V106I", "K122E", "D123E", "K223E", "T297K", "Q334H", "K356R", "R358K"], "RT-p66": ["P4T", "T35S", "T39N", "V106I", "K122E", "D123E", "K223E", "T297K", "Q334H", "K356R", "R358K", "S446A", "R461K", "K527G", "A554D", "K558R"], "gp120": ["N1G", "A2V", "A3T", "E4G", "N5D", "K18R", "T21N", "N52S", "E74D", "I81S", "T104I", "-106A", "-109T", "N111R", "T112A", "S114T", "-116R", "-118A", "-120R", "M121T", "K123E", "E125I", "M126G", "N138G", "K143G", "E144V", "L147Y", "D157E", "N158E", "-159N", "-160T", "S162N", "V172K", "S181T", "K199R", "K204T", "T208K", "R224K", "E247D", "A253V", "E262Q", "E265A", "H280N", "R307G", "E308K", "K309D", "K315I", "Q316K", "R322K", "F325Y", "N327-", "-328N", "N334Q", "Q335P", "T360S", "-378N", "-379N", "-380T", "-381G", "-382G", "-383D", "-384G", "T385N", "G401E", "K412R", "R416S", "N432D", "N434S", "N435S", "T436N"], "gp41": ["R46K", "V69I", "L82M", "K106R", "Q110Y", "D129S", "D163S", "M176I", "I182V", "E228D", "P236R", "L237S", "H258R", "R259H", "I266V", "V267A", "T268A", "A281V", "I329L", "I332V"], "nef": ["M20I", "P24S", "A26V", "E28T", "A32P", "R35Q", "E38G", "K39R", "S45N", "-50S", "-51D", "N52-", "A53-", "E63D", "V85L", "I101V", "K105R", "P129S", "I133T", "T138C", "K152E", "H171Q", "D174E", "K184R", "R188L", "H192R"], "p1": ["K4R", "H9Y"], "p17": ["K28Q", "Y79F", "T84V", "K91R", "D93Q", "N109K", "K110E"], "p2": ["A7L", "I13V"], "p24": ["Q50T", "H87Q", "M96I", "T110N", "T178S", "E180D", "K203R", "T210S", "V230I"], "p6": ["A12R", "E20Q", "K31E", "L35A"], "p7": ["M1V", "K3R", "N5D", "R10K", "I12N", "R26K"], "pro": ["V15I", "L19Q", "D35E", "K45R", "N61D", "L63P", "M89I"], "rev": ["L13I", "T15I", "S25N", "E47Q", "R53G", "P67L", "L73F", "D84G", "N86S", "I102V", "T108S"], "tat": ["P59H", "V67I"], "vif": ["F39A", "R50K", "K61T", "K63E", "H73N", "G92R", "R93K", "D99S", "L106M", "I109V", "N122K", "T151A", "K158Q", "S186N"], "vpr": ["H45Y", "E48N", "I61T", "T84Y", "R86Q"], "vpu": ["Q5N", "A7V", "A15S", "A16G", "I18V", "L27F", "R41S", "-69P", "-70L", "-71V", "-72L", "-73R", "-80D", "-81I", "*83W"]}, "labels": {"aa": "INT: S17N, S39N, T112A, K136R, K188R, I220L, I268L, D270H, G283S; RT-p51: P4T, T35S, T39N, V106I, K122E, D123E, K223E, T297K, Q334H, K356R, R358K; RT-p66: P4T, T35S, T39N, V106I, K122E, D123E, K223E, T297K, Q334H, K356R, R358K, S446A, R461K, K527G, A554D, K558R; gp120: N1G, A2V, A3T, E4G, N5D, K18R, T21N, N52S, E74D, I81S, T104I, -106A, -109T, N111R, T112A, S114T, -116R, -118A, -120R, M121T, K123E, E125I, M126G, N138G, K143G, E144V, L147Y, D157E, N158E, -159N, -160T, S162N, V172K, S181T, K199R, K204T, T208K, R224K, E247D, A253V, E262Q, E265A, H280N, R307G, E308K, K309D, K315I, Q316K, R322K, F325Y, N327-, -328N, N334Q, Q335P, T360S, -378N, -379N, -380T, -381G, -382G, -383D, -384G, T385N, G401E, K412R, R416S, N432D, N434S, N435S, T436N; gp41: R46K, V69I, L82M, K106R, Q110Y, D129S, D163S, M176I, I182V, E228D, P236R, L237S, H258R, R259H, I266V, V267A, T268A, A281V, I329L, I332V; nef: M20I, P24S, A26V, E28T, A32P, R35Q, E38G, K39R, S45N, -50S, -51D, N52-, A53-, E63D, V85L, I101V, K105R, P129S, I133T, T138C, K152E, H171Q, D174E, K184R, R188L, H192R; p1: K4R, H9Y; p17: K28Q, Y79F, T84V, K91R, D93Q, N109K, K110E; p2: A7L, I13V; p24: Q50T, H87Q, M96I, T110N, T178S, E180D, K203R, T210S, V230I; p6: A12R, E20Q, K31E, L35A; p7: M1V, K3R, N5D, R10K, I12N, R26K; pro: V15I, L19Q, D35E, K45R, N61D, L63P, M89I; rev: L13I, T15I, S25N, E47Q, R53G, P67L, L73F, D84G, N86S, I102V, T108S; tat: P59H, V67I; vif: F39A, R50K, K61T, K63E, H73N, G92R, R93K, D99S, L106M, I109V, N122K, T151A, K158Q, S186N; vpr: H45Y, E48N, I61T, T84Y, R86Q; vpu: Q5N, A7V, A15S, A16G, I18V, L27F, R41S, -69P, -70L, -71V, -72L, -73R, -80D, -81I, *83W"}}}, {"name": "CRF71_BF1_NODE_0000006", "node_attrs": {"div": 0.13066999999999998, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C482T", "T495G", "G599A", "C641G", "A706-", "A1476G", "C1825A", "C2005T", "G2925A", "C3856T", "A4455T", "G4677A", "G4799A", "G5225A", "A5734C", "A5842-", "T5843-", "T5844-", "A6065G", "G6201A", "A6268-", "G6311A", "T6337C", "A6458G", "C6482A", "G6669A", "G6884A", "T6895C", "G7004-", "C7008-", "C7153T", "C7164A", "G7441A", "G7628A", "G7868A", "G8888A", "G8922A"], "INT": ["Y227F"], "RT-p51": ["R277K"], "RT-p66": ["R277K"], "gp120": ["N71D", "V153I", "-159D", "N202D", "P210T", "S272N", "E294D", "V344I"], "gp41": ["D109N", "V189T", "W285C"], "p17": ["S54A", "D102E", "N124S"], "vif": ["V31I"], "vpr": ["G41S"], "vpu": ["I43L"]}, "labels": {"aa": "INT: Y227F; RT-p51: R277K; RT-p66: R277K; gp120: N71D, V153I, -159D, N202D, P210T, S272N, E294D, V344I; gp41: D109N, V189T, W285C; p17: S54A, D102E, N124S; vif: V31I; vpr: G41S; vpu: I43L"}}, "children": [{"name": "KJ849776", "node_attrs": {"div": 0.18164999999999998, "accession": "KJ849776", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE088"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T12A", "T13C", "C18-", "A19-", "G20-", "A21-", "C40-", "G42-", "G43-", "C44-", "T100C", "G121T", "T151C", "T153C", "A161C", "T163G", "A167G", "T200C", "G224A", "C227A", "A263G", "C281A", "-305T", "A319G", "G369C", "A398G", "A399C", "A401G", "A424G", "G455A", "A491G", "C525T", "A563G", "G579A", "G607A", "A609G", "A611G", "A643G", "A645G", "A647G", "A666T", "T668C", "A676G", "G690A", "A692C", "G703A", "A705-", "C707-", "-712A", "-713T", "T718C", "C749T", "A774C", "A776G", "A833G", "T851C", "A920G", "G989A", "C1004T", "A1070G", "T1091C", "A1242T", "C1243G", "C1292G", "C1350A", "G1421A", "-1444C", "-1445A", "-1446C", "C1447A", "A1448G", "-1457A", "-1458A", "-1459C", "-1460T", "A1461G", "G1487A", "C1490T", "G1493A", "A1529T", "C1541T", "A1580G", "G1621A", "A1642G", "A1670G", "G1691A", "C1693T", "A1715G", "G1736A", "A1743-", "C1744-", "C1745-", "-1746A", "-1747C", "-1748T", "C1752T", "C1775A", "G1780A", "T1783A", "T1785C", "C1795T", "T1796C", "C1826T", "C1833A", "A1879G", "A1979G", "C1987T", "A1993T", "T2013C", "G2042A", "G2068A", "G2074A", "G2134A", "G2156A", "G2173A", "C2199T", "A2210G", "A2224G", "G2241A", "T2266C", "G2311A", "A2317G", "T2335C", "T2365G", "A2374G", "A2380G", "G2407A", "G2411A", "A2422G", "T2449C", "A2498C", "A2560G", "T2708C", "G2714A", "C2715A", "A2727G", "T2740C", "T2779C", "G2788A", "C2797T", "T2806C", "C2857A", "T2863C", "T2890C", "A2920G", "A2954C", "G3019A", "G3058A", "T3068C", "A3111G", "T3112G", "A3196G", "G3221T", "C3224A", "T3225C", "G3264A", "A3302T", "T3349C", "G3391A", "A3448G", "C3475T", "G3477A", "C3492T", "T3530C", "A3532G", "A3543G", "G3544T", "A3562G", "T3668C", "A3670G", "T3778C", "A3808T", "G3814A", "T3820C", "C3823T", "A3825G", "T3844C", "G3846A", "C3857A", "G3859A", "A3880G", "T4024C", "G4057A", "C4078T", "G4156A", "G4226A", "T4276C", "T4288C", "C4318T", "A4420C", "G4495A", "G4498A", "A4652G", "T4679C", "A4697G", "T4701C", "C4702G", "A4709T", "C4710A", "C4724T", "G4735A", "C4761T", "G4766A", "A4773G", "A4781G", "A4790C", "G4862A", "A4863C", "G4864A", "G4865A", "G4871A", "A4878G", "G4881C", "G4888A", "C4902T", "A4937C", "C4988T", "G5037A", "A5050G", "A5057G", "G5062C", "A5085G", "G5087T", "G5099A", "T5147A", "A5148G", "A5151G", "G5179A", "A5186G", "C5221T", "T5224C", "A5225C", "G5226A", "G5233A", "T5251C", "T5260C", "A5272G", "A5277T", "T5293C", "C5303T", "G5305A", "T5333C", "A5336C", "T5357C", "T5359C", "A5360T", "G5363A", "G5382T", "G5396A", "C5398T", "G5433A", "C5446T", "A5453T", "G5463A", "T5487C", "G5548C", "C5559T", "C5567A", "T5568C", "G5575A", "G5599A", "C5611A", "A5613T", "C5614T", "T5617A", "A5628C", "G5629T", "A5637G", "A5640T", "C5651T", "G5668A", "C5688T", "A5706T", "A5718G", "G5725A", "G5729A", "C5805T", "G5830A", "C5833A", "G5865A", "G5866A", "G5867C", "C5869A", "T5870C", "G5893A", "G5902A", "C5980A", "G6020A", "A6023G", "A6024T", "A6031G", "A6044C", "A6045C", "T6046A", "G6088A", "C6115T", "A6133G", "T6169A", "G6170T", "C6171T", "-6172A", "-6175G", "A6177G", "T6178G", "A6179-", "T6181-", "A6182-", "C6183-", "T6184-", "A6197G", "A6200G", "A6204G", "G6205A", "-6210G", "-6211A", "A6212G", "C6213T", "G6215T", "G6221A", "G6222A", "A6251T", "A6261G", "A6266-", "A6267-", "A6270G", "A6273G", "G6284C", "T6287A", "T6289C", "T6299A", "A6302G", "T6304C", "G6314A", "A6318C", "C6320A", "G6323A", "A6327G", "A6329G", "G6345A", "C6361T", "G6368A", "T6369G", "A6395G", "T6418C", "T6424C", "T6436G", "G6451A", "G6466T", "A6482G", "C6483T", "A6484G", "G6578A", "T6592A", "C6595A", "G6604A", "C6612T", "A6684C", "A6686G", "C6692A", "G6743A", "G6774A", "A6775G", "A6776G", "C6800A", "A6801G", "A6833-", "A6834-", "A6848G", "C6850T", "A6855C", "A6859T", "G6894C", "A6929T", "T6952A", "-6956G", "-6957A", "-6958A", "-6959A", "-6960A", "-6961T", "-6962A", "-6963A", "-6964T", "-6965A", "-6966C", "-6967A", "-6968T", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975C", "-6977G", "-6980G", "-6981G", "-6982G", "-6983G", "-6984C", "-6985A", "-6990G", "-6996A", "-6997C", "-6998A", "-6999A", "-7000A", "-7001T", "-7002A", "A7007-", "T7081C", "C7087T", "A7090G", "G7101A", "C7124T", "G7126A", "T7144A", "A7148T", "A7149G", "A7151C", "G7152T", "A7158C", "C7159G", "A7161C", "G7162A", "C7165T", "G7168C", "C7182G", "G7212A", "A7241C", "T7321C", "C7328A", "A7396G", "G7426A", "C7463A", "A7522G", "G7534T", "T7537C", "A7542G", "A7553C", "T7575A", "A7604G", "T7622A", "G7627A", "A7629G", "T7633A", "T7642A", "G7658C", "A7666G", "G7668A", "C7701A", "G7717A", "A7721G", "A7722T", "G7735A", "A7747T", "G7753A", "G7790A", "A7791G", "A7915G", "C7939A", "C7940G", "A7974G", "A8011G", "A8023C", "C8044G", "C8047T", "C8048A", "T8112C", "T8155C", "G8157T", "A8255G", "T8256C", "G8323T", "T8337A", "A8341G", "A8370C", "T8375A", "A8388G", "C8411A", "C8413G", "T8414C", "A8458G", "T8477C", "-8486T", "-8487G", "-8488G", "T8492-", "A8493-", "A8494-", "C8514T", "G8534A", "G8537A", "G8590A", "A8591T", "-8595G", "A8617G", "G8619A", "A8622G", "C8640A", "A8642G", "T8646C", "A8657C", "C8676T", "G8678A", "A8701T", "A8754T", "C8755G", "G8799A", "A8805G", "T8832C", "G8834A", "A8837G", "G8858A", "A8875G", "T8887C", "C8904A", "T8915C", "T8923G", "G8924A", "G8955A", "T8966C", "C8971G", "A8977T", "A9018G"], "INT": ["E11D", "S24N", "L28I", "V151I", "K215N"], "RT-p51": ["V21I", "T35I", "T39A", "R49K", "V106I", "I135L", "A207K", "K211R", "K287Q", "Y339W", "A376S", "L377T", "R390K", "T403S"], "RT-p66": ["V21I", "T35I", "T39A", "R49K", "V106I", "I135L", "A207K", "K211R", "K287Q", "Y339W", "A376S", "L377T", "R390K", "T403S", "R461K", "A466V", "K483S"], "gp120": ["N1S", "N5Q", "V56I", "K57V", "N64P", "D105E", "-106L", "-107K", "N108R", "T110-", "N113T", "T115G", "-116D", "-118R", "N119R", "-120V", "M121L", "I133F", "D136G", "N138-", "D139G", "K140R", "K141I", "E144Q", "Y145N", "Y149N", "N150D", "V154I", "Q155P", "L156I", "D157N", "N158A", "-160N", "R164K", "V172R", "S181A", "K204N", "T210V", "V242I", "A253V", "K277T", "S278G", "H280N", "D297N", "R307K", "Q316R", "N327-", "-328N", "I332V", "N334T", "Q335H", "S347T", "T359S", "-368E", "-369N", "-370S", "-371T", "-372W", "-378N", "-379N", "-380T", "-381E", "-382G", "-383A", "-384N", "T385S", "R416K", "N432C", "N433L", "N435T", "E438D", "A443G", "S453N", "I463L"], "gp41": ["L9I", "L54M", "K77N", "Q80R", "I84L", "L91H", "T101A", "S107T", "N109S", "D113E", "E119Q", "R122K", "D129G", "T133N", "N140V", "E148D", "D163S", "P213A", "E224G", "L249I", "I270T", "C285L", "I318A", "A325V", "L345Q"], "nef": ["I10L", "I16V", "T23A", "P24E", "P25G", "K39R", "N49G", "G83D", "K92R", "E93K", "K94E", "L100M", "Y102H", "K105N", "Y120F", "T138C", "V153I", "K155E", "K178R", "V182A", "R188S", "V194R", "D205N"], "p1": ["K4R"], "p17": ["E12Q", "K30R", "V82I", "I92V", "K103R", "I104V", "S111C", "K114R", "A119T", "G123E", "S124-", "-126N", "V128A"], "p2": ["N8Q", "I13V"], "p24": ["I15L", "T171C", "D187E", "P207T"], "p6": ["P5L", "P24S", "G34E", "L35Q", "Y36H", "A39V", "P49H", "Q52K"], "p7": ["S4G", "E21D", "R52K"], "pro": ["T12K", "N61D", "E65D", "I72T", "V82I"], "rev": ["E11D", "T15I", "L18T", "P31S", "I55V", "I59L", "R66G", "P67Y"], "tat": ["E2D", "R7K", "P24S", "Y26F", "A58P", "T64N", "V67I", "P77Q"], "vif": ["F39R", "R41S", "H42N", "R50K", "K63E", "R93Q", "I98V", "D99H", "G101D", "E117D", "K155R", "R159T", "T167A", "H187Q", "T188A", "M189V"], "vpr": ["Y15S", "N16S", "T28A", "S41H", "E58V", "Q77H", "A93S"], "vpu": ["Q2N", "P3S", "L4I", "A7V", "A8S", "A15V", "V21I", "L27F", "D40N", "R41K", "-76P", "-77L", "-78I", "-79I", "-80G", "-81D"]}, "labels": {"aa": "INT: E11D, S24N, L28I, V151I, K215N; RT-p51: V21I, T35I, T39A, R49K, V106I, I135L, A207K, K211R, K287Q, Y339W, A376S, L377T, R390K, T403S; RT-p66: V21I, T35I, T39A, R49K, V106I, I135L, A207K, K211R, K287Q, Y339W, A376S, L377T, R390K, T403S, R461K, A466V, K483S; gp120: N1S, N5Q, V56I, K57V, N64P, D105E, -106L, -107K, N108R, T110-, N113T, T115G, -116D, -118R, N119R, -120V, M121L, I133F, D136G, N138-, D139G, K140R, K141I, E144Q, Y145N, Y149N, N150D, V154I, Q155P, L156I, D157N, N158A, -160N, R164K, V172R, S181A, K204N, T210V, V242I, A253V, K277T, S278G, H280N, D297N, R307K, Q316R, N327-, -328N, I332V, N334T, Q335H, S347T, T359S, -368E, -369N, -370S, -371T, -372W, -378N, -379N, -380T, -381E, -382G, -383A, -384N, T385S, R416K, N432C, N433L, N435T, E438D, A443G, S453N, I463L; gp41: L9I, L54M, K77N, Q80R, I84L, L91H, T101A, S107T, N109S, D113E, E119Q, R122K, D129G, T133N, N140V, E148D, D163S, P213A, E224G, L249I, I270T, C285L, I318A, A325V, L345Q; nef: I10L, I16V, T23A, P24E, P25G, K39R, N49G, G83D, K92R, E93K, K94E, L100M, Y102H, K105N, Y120F, T138C, V153I, K155E, K178R, V182A, R188S, V194R, D205N; p1: K4R; p17: E12Q, K30R, V82I, I92V, K103R, I104V, S111C, K114R, A119T, G123E, S124-, -126N, V128A; p2: N8Q, I13V; p24: I15L, T171C, D187E, P207T; p6: P5L, P24S, G34E, L35Q, Y36H, A39V, P49H, Q52K; p7: S4G, E21D, R52K; pro: T12K, N61D, E65D, I72T, V82I; rev: E11D, T15I, L18T, P31S, I55V, I59L, R66G, P67Y; tat: E2D, R7K, P24S, Y26F, A58P, T64N, V67I, P77Q; vif: F39R, R41S, H42N, R50K, K63E, R93Q, I98V, D99H, G101D, E117D, K155R, R159T, T167A, H187Q, T188A, M189V; vpr: Y15S, N16S, T28A, S41H, E58V, Q77H, A93S; vpu: Q2N, P3S, L4I, A7V, A8S, A15V, V21I, L27F, D40N, R41K, -76P, -77L, -78I, -79I, -80G, -81D"}}}, {"name": "CRF71_BF1_NODE_0000007", "node_attrs": {"div": 0.13634, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A378C", "G677A", "G1192A", "-1453C", "-1454A", "C1826G", "G2837A", "A3080T", "T3505C", "A3825C", "C4195T", "T5578C", "T5627C", "C5679T", "T5686C", "C5824-", "C5825-", "T5826-", "C5827-", "T5828-", "T5829-", "G5830C", "T5831C", "G5838T", "G5839A", "G5858A", "G5972A", "C5980T", "G6167A", "-6175T", "C6187T", "C6192A", "T6276G", "A6277G", "A6281-", "A6282-", "A6283-", "C6293A", "A6589G", "A6594C", "C6717T", "A6978-", "C7156T", "A7190G", "T7250A", "C7579T", "T7656A", "A7903C", "T7932A", "G8001C", "G8144A", "G8158T", "C8294A", "C8640T", "G8738A", "T8829A"], "INT": ["S17T"], "RT-p51": ["D248N", "I329L"], "RT-p66": ["D248N", "I329L"], "gp120": ["A2T", "E4G", "V40I", "N64D", "-109S", "K123G", "E247A", "A288V", "N446D", "L466I"], "gp41": ["M118R", "L210H", "R233T", "A281T", "H331N", "F340L"], "nef": ["E38G", "C163S"], "p24": ["R154K"], "p6": ["P49Q"], "pro": ["L10V"], "rev": ["Q51H", "S99N"], "tat": ["S68P", "S75T"], "vif": ["T151A"], "vpr": ["P85L"], "vpu": ["-69P", "-70L", "-72I", "-73G", "-74N", "-75N"]}, "labels": {"aa": "INT: S17T; RT-p51: D248N, I329L; RT-p66: D248N, I329L; gp120: A2T, E4G, V40I, N64D, -109S, K123G, E247A, A288V, N446D, L466I; gp41: M118R, L210H, R233T, A281T, H331N, F340L; nef: E38G, C163S; p24: R154K; p6: P49Q; pro: L10V; rev: Q51H, S99N; tat: S68P, S75T; vif: T151A; vpr: P85L; vpu: -69P, -70L, -72I, -73G, -74N, -75N"}}, "children": [{"name": "CRF71_BF1_NODE_0000008", "node_attrs": {"div": 0.14193, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["-305A", "G410A", "G508A", "-706G", "G1404A", "-1452C", "-1455G", "A1897G", "G2524A", "T2542C", "T2602G", "C2635A", "A3490G", "A3808C", "A4000G", "A4107C", "C4141T", "A4767G", "A4768C", "G5267A", "C5446T", "G5837T", "A5840T", "-5842G", "-5843G", "-5844G", "G5856A", "A6044G", "G6088T", "C6160T", "T6287A", "A6326G", "A6464G", "G6605A", "A6734G", "T6735A", "-6835G", "T6885C", "T7105C", "A7315C", "T7321C", "G7549T", "C7605A", "T7708A", "G7712A", "C7755A", "G8018A", "A8455G", "T8483C", "G8588A", "T8594C", "-8595T"], "INT": ["E11D", "K111T"], "RT-p51": ["D169E"], "RT-p66": ["D169E"], "gp120": ["-118G", "Y145N", "D251N", "-326K", "I344T"], "gp41": ["T101N", "R118K", "E137N", "A151E", "D239N"], "nef": ["A26T"], "p17": ["R58K"], "p2": ["A7V", "N8-", "T9-", "T12-", "I13-"], "p24": ["G225S"], "rev": ["G57E"], "tat": ["P24S"], "vif": ["K61A"], "vpr": ["A55T"]}, "labels": {"aa": "INT: E11D, K111T; RT-p51: D169E; RT-p66: D169E; gp120: -118G, Y145N, D251N, -326K, I344T; gp41: T101N, R118K, E137N, A151E, D239N; nef: A26T; p17: R58K; p2: A7V, N8-, T9-, T12-, I13-; p24: G225S; rev: G57E; tat: P24S; vif: K61A; vpr: A55T"}}, "children": [{"name": "KJ849760", "node_attrs": {"div": 0.17464000000000002, "accession": "KJ849760", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE009"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G215A", "A220G", "A301G", "C362T", "G369A", "G379A", "T396C", "A412G", "G413C", "A431G", "C462A", "G495C", "G520T", "A676G", "G697A", "G709A", "-712G", "-713C", "G716T", "C746T", "A747G", "G755T", "G771C", "T777A", "T861G", "G1346A", "T1358A", "A1367G", "T1427G", "-1450A", "-1451T", "-1457T", "A1461G", 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"C5086A", "C5125T", "G5179A", "T5197C", "A5212G", "T5239C", "A5248G", "A5375G", "A5397G", "G5412C", "A5432G", "C5444A", "T5454C", "A5462G", "T5472A", "A5493G", "C5551T", "T5584C", "C5611A", "A5613C", "C5620G", "A5621T", "G5650A", "A5718G", "G5836A", "T5870A", "T5871A", "C5884A", "A5995G", "A6023G", "A6031G", "C6052T", "G6079A", "T6151C", "T6166C", "C6171T", "-6172A", "T6175G", "-6180C", "A6188-", "C6189-", "C6190-", "A6191-", "A6192-", "T6193-", "A6194-", "G6195-", "T6196-", "A6197-", "G6198-", "T6199-", "A6200-", "A6201-", "C6202-", "G6207A", "A6208T", "-6210C", "-6211A", "A6228G", "-6268C", "G6269A", "A6273G", "T6295G", "A6318T", "C6320A", "T6321A", "A6329G", "C6337T", "C6340T", "A6370T", "G6379A", "G6430T", "G6442A", "A6489G", "A6508G", "A6538T", "C6632T", "G6638A", "A6639G", "A6640T", "A6685G", "C6692A", "A6777C", "A6779G", "A6780C", "A6786G", "T6787G", "A6797G", "C6807A", "T6810A", "G6819A", "T6849C", "A6858C", "G6910-", "G6911-", "A6912-", "A6913-", "T6914-", "T6915-", "T6916-", "T6917-", "T6918-", "C6919-", "T6920-", "A6921-", "C6922-", "T6923-", "G6924-", "T6925-", "A6926-", "A6927-", "T6928-", "A6929-", "C6930-", "A6931-", "A6932-", "C6933-", "A6934-", "C6935-", "A6936-", "A6937-", "C6938-", "T6939-", "G6940-", "T6941-", "T6942-", "T6943-", "A6944-", "A6945-", "T6946-", "A6947-", "G6948-", "T6949-", "A6950-", "C6951-", "T6952-", "T6953-", "G6954-", "G6955-", "T6976-", "A6979-", "A6986-", "A6987-", "T6988-", "A6989-", "C6991-", "A6992-", "C6993-", "T6994-", "G6995-", "T7003-", "A7007-", "A7010-", "T7011-", "C7012-", "A7013-", "C7014-", "A7015-", "C7016-", "T7017-", "C7018-", "C7019-", "C7020-", "A7021-", "T7022-", "G7023-", "C7024-", "A7025-", "G7026-", "A7027-", "A7028-", "T7029-", "A7030-", "A7031-", "A7032-", "A7033-", "C7034-", "A7035-", "A7036-", "A7037-", "T7038-", "T7039-", "A7040-", "T7041-", "A7042-", "A7043-", "A7044-", "C7045-", "A7046-", "T7047-", "G7048-", "T7049-", "G7050-", "G7051-", "C7052-", "A7053-", "G7054-", "G7055-", "G7056-", "A7057-", "G7058-", "T7059-", "A7060-", "G7061-", "G7062-", "A7063-", "A7064-", "A7065-", "C7124T", "A7129G", "T7130C", "A7154G", "A7155G", "C7159T", "A7161G", "G7162T", "A7163T", "A7164C", "C7165T", "A7246G", "A7255G", "T7313C", "G7426A", "G7552A", "A7589G", "T7615C", "A7621G", "C7631G", "T7633A", "G7660T", "A7714T", "A7722T", "T7801A", "A7847G", "A7871G", "C7903T", "C7938G", "G8008A", "C8010A", "A8032G", "C8044G", "A8050G", "A8076G", "A8092T", "A8104C", "A8143G", "G8276A", "G8330C", "C8331T", "T8371G", "C8382T", "C8386T", "C8412G", "C8413A", "A8438G", "A8458G", "G8528A", "G8590C", "A8597C", "A8604G", "C8607T", "A8608T"], "INT": ["T111A", "S119T", "F227Y", "V234I", "I257L", "I268L"], "RT-p51": ["K122E", "D123E", "F171Y", "I178M", "T200A", "K211T", "S322A", "F346Y", "L394Q", "V417I"], "RT-p66": ["K122E", "D123E", "F171Y", "I178M", "T200A", "K211T", "S322A", "F346Y", "L394Q", "V417I", "S446A", "K452Q", "R461K", "S468T", "L517I", "A554N"], "gp120": ["N5D", "L6K", "K57E", "-106V", "S114T", "G123-", "G124-", "E125-", "M126-", "K127-", "D139N", "K140R", "K141R", "K142-", "L147M", "N158D", "-160N", "S181T", "K204E", "K212R", "E262S", "H280N", "E308T", "K309A", "N311R", "K315E", "A318D", "I319K", "R322K", "I332T", "Q335P", "E353-", "F354-", "F355-", "Y356-", "C357-", "N358-", "T359-", "T360-", "Q361-", "L362-", "F363-", "N364-", "S365-", "T366-", "W367-", "T385-", "I386-", "T387-", "L388-", "P389-", "C390-", "R391-", "I392-", "K393-", "Q394-", "I395-", "I396-", "N397-", "M398-", "W399-", "Q400-", "G401-", "V402-", "G403-", "K404-", "I425M", "N433S", "N434G", "T436S", "N437S"], "gp41": ["T96A", "Q110E", "E119D", "D129G", "N140I", "N166K", "I182V", "I190V", "A212G", "H258R", "L263F", "A325I", "A343L"], "nef": ["I10R", "P14S", "A15V", "G29R", "K39R"], "p17": ["E12K", "R15Q", "K26S", "A54P", "G62V", "K91R", "K114R", "G121D", "S125N", "-126S", "Q127H"], "p24": ["I6V", "A14P", "S16T", "S44A"], "p6": ["L1I", "K32N"], "p7": ["R26K"], "pro": ["K14R", "E21D", "E65D"], "rev": ["S30R", "N62D", "R66G", "T68A", "T82S", "N86H", "N99D", "V104L"], "tat": ["K12N", "K19R", "T23N", "K29R", "F32L", "I39M", "P59S", "S70P", "P77A"], "vif": ["F39S", "H48N", "V51T", "K63T", "I87V", "R95S", "I109L", "I128V", "A151S", "I154V", "R159T", "T167K", "T180I"], "vpu": ["Q2N", "Q5V", "A15T", "-71I"]}, "labels": {"aa": "INT: T111A, S119T, F227Y, V234I, I257L, I268L; RT-p51: K122E, D123E, F171Y, I178M, T200A, K211T, S322A, F346Y, L394Q, V417I; RT-p66: K122E, D123E, F171Y, I178M, T200A, K211T, S322A, F346Y, L394Q, V417I, S446A, K452Q, R461K, S468T, L517I, A554N; gp120: N5D, L6K, K57E, -106V, S114T, G123-, G124-, E125-, M126-, K127-, D139N, K140R, K141R, K142-, L147M, N158D, -160N, S181T, K204E, K212R, E262S, H280N, E308T, K309A, N311R, K315E, A318D, I319K, R322K, I332T, Q335P, E353-, F354-, F355-, Y356-, C357-, N358-, T359-, T360-, Q361-, L362-, F363-, N364-, S365-, T366-, W367-, T385-, I386-, T387-, L388-, P389-, C390-, R391-, I392-, K393-, Q394-, I395-, I396-, N397-, M398-, W399-, Q400-, G401-, V402-, G403-, K404-, I425M, N433S, N434G, T436S, N437S; gp41: T96A, Q110E, E119D, D129G, N140I, N166K, I182V, I190V, A212G, H258R, L263F, A325I, A343L; nef: I10R, P14S, A15V, G29R, K39R; p17: E12K, R15Q, K26S, A54P, G62V, K91R, K114R, G121D, S125N, -126S, Q127H; p24: I6V, A14P, S16T, S44A; p6: L1I, K32N; p7: R26K; pro: K14R, E21D, E65D; rev: S30R, N62D, R66G, T68A, T82S, N86H, N99D, V104L; tat: K12N, K19R, T23N, K29R, F32L, I39M, P59S, S70P, P77A; vif: F39S, H48N, V51T, K63T, I87V, R95S, I109L, I128V, A151S, I154V, R159T, T167K, T180I; vpu: Q2N, Q5V, A15T, -71I"}}}, {"name": "KJ849773", "node_attrs": {"div": 0.18319, "accession": "KJ849773", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE084"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200G", "T201C", "A401G", "T473C", "G498A", "A499T", "T506C", "C525T", "A530T", "A533G", "A554G", "G579A", "A585G", "C586T", "G605A", "G607A", "T614A", "T636C", "A674C", "A711-", "G771A", "A774C", "A860G", "C872A", "T885C", "C902T", "T978G", "G987A", "T992A", "G1019A", "A1049C", "A1073G", "T1100A", "C1133T", "C1136T", "C1137T", "A1205G", "A1240G", "A1259G", "A1340G", "A1349G", "C1351A", "A1382T", "G1388A", "-1444C", "-1445A", "-1446A", "C1447A", "A1448C", "A1449T", "-1450C", "-1451A", "C1453A", "C1456-", "A1461-", "T1478C", "T1501A", "G1503A", "T1505C", "A1525G", "C1541T", "A1601G", "A1620G", "C1692A", "C1730T", "-1746T", "-1747C", "-1748C", "T1749C", "C1751T", "T1754G", "C1755A", "C1756A", "A1758C", "A1771G", "A1774G", "C1775G", "G1780A", "A1855G", "G1972A", "T2005A", "T2101A", "A2127G", "G2134A", "C2199T", "A2215T", "G2241A", "A2242G", "C2296T", "A2297G", "T2386G", "A2422G", "T2479G", "A2498G", "A2557G", "C2575T", "A2590G", "G2612A", "C2613T", "C2626T", "A2641G", "C2723T", "G2725A", "G2818A", "G2842A", "A2866T", "G2869A", "C2968A", "A2981T", "A3025G", "T3067G", "T3080C", "G3094A", "A3103G", "A3226G", "C3266T", "C3275T", "T3292C", "A3370G", "G3379T", "T3424C", "C3505A", "G3523A", "G3529A", "A3565G", "A3595G", "G3695A", "A3703G", "C3751A", "G3770A", "T3779C", "A3787C", "T3793C", "G3834A", "A3880G", "T3904C", "T3943C", "T3946C", "A3982G", "G3989A", "T4039C", "A4076C", "T4165C", "A4243G", "C4321T", "A4376G", "A4567G", "G4573A", "A4695G", "C4702T", "G4727A", "A4775C", "G4864A", "A4951G", "C4988A", "C5019T", "A5049C", "A5050C", "C5053A", "A5063G", "A5186G", "G5226A", "A5236G", "C5237T", "C5242A", "A5282T", "A5335G", "C5356A", "G5362A", "G5370A", "G5382A", "G5548T", "T5576C", "T5617A", "A5623G", "C5651T", "A5659T", "T5669C", "A5680G", "A5751C", "C5805T", "G5867A", "C5878A", "C5884T", "C5917T", "A5935G", "T6046G", "A6092G", "A6131C", "C6165G", "T6166G", "-6172C", "A6174G", "-6180G", "C6183G", "T6187C", "G6203C", "A6206G", "A6209-", "A6212C", "G6215A", "A6219G", "G6265A", "-6268T", "G6274A", "G6276A", "G6277A", "A6279G", "-6281A", "-6282A", "-6283G", "A6293C", "T6304G", "A6311C", "A6332G", "A6338-", "G6339-", "C6340-", "C6396G", "G6430A", "T6460G", "A6462C", "A6465C", "A6476T", "A6482G", "C6483T", "A6484G", "T6487C", "A6490C", "T6511C", "G6547T", "C6548T", "A6553G", "G6572A", "G6581A", "G6589A", "T6592C", "G6593A", "C6594A", "C6595G", "A6609G", "A6614C", "T6641A", "G6647A", "A6686G", "C6708T", "A6776G", "A6777G", "A6778G", "A6779C", "A6818G", "A6854G", "C6857A", "T6860A", "C6861A", "C6876T", "A6881G", "A6884G", "T6904C", "G6905A", "-6956C", "-6957A", "-6958T", "-6968G", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6974G", "-6975G", "-6977A", "-6978C", "-6980G", "-6981T", "-6982G", "-6983A", "-6984T", "-6985A", "-6990T", "G6995A", "-6996A", "-6997C", "-6998G", "-6999A", "-7000A", "-7001A", "-7002G", "-7004G", "-7005A", "-7006A", "-7008A", "-7009T", "G7055A", "A7060G", "C7078T", "A7102C", "A7138T", "G7142A", "T7144G", "A7148G", "A7149G", "T7150G", "A7151G", "A7157G", "C7159A", "A7161C", "C7171T", "G7181A", "A7186G", "G7340T", "G7341C", "G7343A", "A7373G", "A7459G", "C7463A", "C7489T", "G7519A", "T7591A", "A7620C", "T7622A", "C7623G", "G7627A", "A7628G", "C7631A", "T7633C", "A7641G", "T7642C", "G7658C", "G7660A", "G7689A", "C7690T", "A7706C", "A7714C", "T7751C", "G7777A", "A7868G", "C7869T", "A7880G", "A7886C", "C7906T", "T7913C", "C7939T", "A7943G", "T7968C", "A7971C", "A7977G", "A7992G", "C8009A", "T8013C", "C8044A", "G8079A", "T8103C", "C8145T", "T8158G", "A8163G", "G8173A", "G8242A", "G8245A", "A8254G", "A8255G", "T8266C", "T8277C", "T8278G", "A8282G", "C8293T", "A8341G", "T8387C", "A8396G", "G8402A", "G8418A", "T8431C", "G8432A", "G8446A", "A8461G", "C8485T", "C8503A", "C8514G", "G8567T", "A8571C", "T8646C", "A8654G", "A8655C", "C8688A", "C8711T", "G8732A", "C8751A", "G8753A", "C8790A", "A8797G", "A8804G", "A8816G", "C8849T", "A8851T"], "INT": ["R20K", "V72I", "I101L", "I201V"], "RT-p51": ["K11R", "T35I", "E40D", "R49K", "S68G", "I135V", "A173I", "D291E", "T296S", "D324E", "Q428H"], "RT-p66": ["K11R", "T35I", "E40D", "R49K", "S68G", "I135V", "A173I", "D291E", "T296S", "D324E", "Q428H", "A534T", "V559I"], "gp120": ["D64E", "E78D", "I80V", "K93Q", "T104R", "D105N", "-106A", "-107S", "N108I", "T115S", "-116N", "G117Q", "N119P", "E122G", "M137I", "K142R", "N150K", "I153L", "-160T", "T161-", "S162-", "D202E", "K203T", "K204A", "T208S", "T210V", "K212N", "E240K", "V243I", "A247K", "N252S", "K254Q", "S263T", "E265K", "S278G", "P285L", "D294E", "E308G", "K309Q", "R322G", "N334D", "Q335K", "S336N", "P341L", "I343V", "T344A", "G351R", "-368H", "-382G", "-383N", "-384G", "G401R", "R416S", "R428S", "G430R", "N432G", "N433G", "N435E", "A443T"], "gp41": ["L4F", "G13S", "A14T", "I24V", "L54M", "K106T", "N109D", "Q110N", "D113G", "E119Q", "I135L", "T189V", "I193V", "N195H", "R214G", "I222T", "E223A", "E225G", "D230G", "P236T", "L237S", "R259H", "V267A", "T281I", "C285W", "N287S", "I318V", "R327G"], "nef": ["M20I", "V30A", "R35Q", "H40R", "A54D", "L58V", "V85L", "Y102H", "K105Q", "H116N", "L137I", "P150T", "K152R", "Q170L"], "p17": ["E55I", "Q65H", "V82I", "T84V", "D93E", "K113N"], "p24": ["A14T", "I15L", "L83V", "V86M", "H87Q", "M96I", "K170R", "P207Q"], "p6": ["P5T", "Q30P", "K31R", "K32Q", "G34E"], "p7": ["S4G", "I12N", "V13I", "K20R", "R52G"], "pro": ["H69Q"], "rev": ["E11D", "F21L", "P31S", "E32G", "A54D", "V109I"], "tat": ["A58S", "V67A", "P77L", "S87P"], "vif": ["R37G", "K63N", "R93K", "N122S", "D134E", "K155P", "P156Q"], "vpr": ["T28A", "S41N", "H45Y", "I60L", "Q77R", "T84N", "R86Q", "A89T", "A93T"], "vpu": ["L4I", "I6V", "A15V", "I18L", "V21A", "I25V", "E48D", "-71V"]}, "labels": {"aa": "INT: R20K, V72I, I101L, I201V; RT-p51: K11R, T35I, E40D, R49K, S68G, I135V, A173I, D291E, T296S, D324E, Q428H; RT-p66: K11R, T35I, E40D, R49K, S68G, I135V, A173I, D291E, T296S, D324E, Q428H, A534T, V559I; gp120: D64E, E78D, I80V, K93Q, T104R, D105N, -106A, -107S, N108I, T115S, -116N, G117Q, N119P, E122G, M137I, K142R, N150K, I153L, -160T, T161-, S162-, D202E, K203T, K204A, T208S, T210V, K212N, E240K, V243I, A247K, N252S, K254Q, S263T, E265K, S278G, P285L, D294E, E308G, K309Q, R322G, N334D, Q335K, S336N, P341L, I343V, T344A, G351R, -368H, -382G, -383N, -384G, G401R, R416S, R428S, G430R, N432G, N433G, N435E, A443T; gp41: L4F, G13S, A14T, I24V, L54M, K106T, N109D, Q110N, D113G, E119Q, I135L, T189V, I193V, N195H, R214G, I222T, E223A, E225G, D230G, P236T, L237S, R259H, V267A, T281I, C285W, N287S, I318V, R327G; nef: M20I, V30A, R35Q, H40R, A54D, L58V, V85L, Y102H, K105Q, H116N, L137I, P150T, K152R, Q170L; p17: E55I, Q65H, V82I, T84V, D93E, K113N; p24: A14T, I15L, L83V, V86M, H87Q, M96I, K170R, P207Q; p6: P5T, Q30P, K31R, K32Q, G34E; p7: S4G, I12N, V13I, K20R, R52G; pro: H69Q; rev: E11D, F21L, P31S, E32G, A54D, V109I; tat: A58S, V67A, P77L, S87P; vif: R37G, K63N, R93K, N122S, D134E, K155P, P156Q; vpr: T28A, S41N, H45Y, I60L, Q77R, T84N, R86Q, A89T, A93T; vpu: L4I, I6V, A15V, I18L, V21A, I25V, E48D, -71V"}}}]}, {"name": "CRF71_BF1_NODE_0000009", "node_attrs": {"div": 0.14039, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G697C", "-1452A", "-1455A", "G1588A", "C2420T", "A3010G", "T4976C", "A4993C", "A5059G", "A5558G", "G5725A", "C5917T", "-6172T", "A6174C", "A6186C", "C6190T", "-6210A", "A6333-", "C6336-", "C6396A", "G6466A", "T6599C", "T6602A", "G6638C", "T6763C", "C6935A", "-6996A", "A7256G", "G7517C", "T7642G", "A7962G", "G8006A"], "RT-p51": ["L377Q"], "RT-p66": ["L377Q"], "gp120": ["-118S", "D139-", "S181N", "F249L", "S250T", "E262Q", "Q361K", "-368N", "-369G", "-371T", "-374D", "-376K", "I468V"], "gp41": ["V72L", "D113E", "E220G", "G235R"], "p17": ["G121A"], "p7": ["R41K"], "rev": ["T15A", "R53Q", "V104L"], "tat": ["D61G", "K85E"], "vif": ["Q136P", "K158R"], "vpu": ["D40N", "L82-"]}, "labels": {"aa": "RT-p51: L377Q; RT-p66: L377Q; gp120: -118S, D139-, S181N, F249L, S250T, E262Q, Q361K, -368N, -369G, -371T, -374D, -376K, I468V; gp41: V72L, D113E, E220G, G235R; p17: G121A; p7: R41K; rev: T15A, R53Q, V104L; tat: D61G, K85E; vif: Q136P, K158R; vpu: D40N, L82-"}}, "children": [{"name": "KJ849761", "node_attrs": {"div": 0.17895999999999998, "accession": "KJ849761", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE016"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["-41A", "G43A", "G121T", "A133T", "G215A", "G224A", "T288C", "A304T", "G317A", "C456T", "C462A", "C467T", "G495T", "A499C", "T506C", "C525T", "A533C", "G607A", "T614G", "A653G", "C688A", "C700G", "A701C", "G702A", "G703C", "A705G", "-706G", "C707A", "-712G", "-713C", "G740A", "A747C", "G762A", "A791G", "G810A", "T852A", "A860G", "C902T", "C926A", "C950T", "T978G", "G989A", "C1005G", "G1067A", "A1145G", "T1182C", "A1205G", "A1208G", "A1242T", "C1243G", "G1256A", "G1388A", "G1404A", "-1444C", "-1445C", "-1446C", "C1447A", "A1449G", "-1450T", "-1451A", "C1453A", "A1454C", "-1457A", "-1458A", "-1459C", "-1460A", "T1502G", "T1511C", "C1541T", "C1724T", "A1743G", "C1775G", "A1839G", "G1845A", "T1888C", "C1985G", "T1986C", "A1993T", "G2038A", "A2113G", "A2230G", "A2380C", "G2407A", "T2464G", "C2503T", "A2512C", "C2584T", "C2596A", "T2608C", "A2616G", "A2693G", "G2707A", "C2715A", "A2716C", "C2749T", "A2764G", "A2837G", "C2839G", "C2845A", "A2914G", "A2925G", "G2947A", "A2969G", "T3067C", "T3080A", "A3096T", "G3221T", "T3225A", "G3250A", "T3292A", "T3342A", "C3355T", "A3382G", "A3409G", "C3445T", "A3451G", "A3478G", "C3492T", "G3523A", "G3544T", "T3550C", "A3637G", "C3649T", "G3664A", "A3787G", "T3793C", "G3814A", "C3823T", "C3825A", "G3907A", "T3970C", "G3989A", "A4036G", "A4076C", "C4110T", "A4148G", "G4183T", "G4186A", "G4252A", "A4255G", "G4267A", "A4391T", "G4659A", "C4674T", "C4691A", "G4696A", "A4697T", "C4702T", "T4703A", "A4767G", "A4838T", "A4950C", "G4995A", "C5006G", "A5015G", "G5024A", "C5034T", "A5045G", "C5086A", "G5179A", "A5236G", "C5237T", "A5248G", "G5257A", "T5314C", "A5375G", "T5430C", "G5433A", "T5442C", "T5471A", "G5482C", "T5483A", "T5487C", "G5538A", "C5551T", "G5561A", "C5567A", "C5614T", "T5616C", "T5617A", "A5622G", "G5647A", "T5677A", "T5679C", "C5688T", "G5700A", "G5836A", "G5837T", "A5840T", "-5842G", "-5843G", "-5844G", "A5858G", "C5859T", "G5861A", "T5871C", "G5882A", "C5958A", "A6025T", "A6030G", "T6046G", "A6076G", "G6088T", "T6109C", "A6132G", "C6165G", "A6177G", "A6179G", "-6180T", "C6183A", "C6186T", "A6194G", "G6195T", "G6198C", "C6202T", "A6204G", "A6208C", "-6211T", "T6216A", "A6219G", "A6248G", "A6261G", "G6269-", "A6270-", "G6274A", "-6281C", "-6282A", "-6283A", "T6294C", "C6317A", "T6325A", "A6326G", "T6328G", "A6329G", "-6333C", "-6336A", "A6370T", "G6403T", "T6457A", "A6466C", "C6483A", "A6484C", "A6489G", "C6496T", "G6525A", "A6535G", "C6559T", "A6574C", "G6588A", "G6605A", "G6617A", "T6618A", "G6631A", "T6658C", "G6714A", "A6715G", "T6745C", "A6765C", "T6772G", "G6774A", "A6780C", "A6786G", "T6787G", "C6790A", "A6791G", "A6797G", "T6810G", "-6830A", "-6831C", "-6832A", "-6835T", "A6836-", "A6837-", "T6838-", "A6842G", "A6855C", "T6856A", "T6860G", "A6887T", "A6893C", "G6894A", "G6910A", "A6932T", "A6935G", "A6936G", "A6947G", "T6952G", "-6956A", "-6957A", "-6958T", "-6959G", "-6960A", "-6961T", "-6962G", "-6963G", "-6964T", "-6965A", "-6966C", "-6967T", "-6968T", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6974G", "-6975A", "-6977A", "-6978C", "-6980A", "-6981A", "-6982A", "-6983T", "-6984T", "-6985A", "A6989G", "-6990A", "-6997G", "T7003-", "-7008A", "-7009C", "C7018T", "C7045T", "T7047G", "G7056A", "C7087A", "A7088C", "T7150C", "G7152A", "T7153C", "T7156C", "A7158C", "G7162C", "G7181A", "A7238C", "A7269G", "A7275G", "G7307A", "T7313C", "A7322G", "T7330C", "A7402G", "A7459G", "G7508A", "A7522G", "A7531G", "A7532C", "C7590A", "A7604G", "G7614A", "A7620G", "C7631T", "G7642A", "A7656G", "G7657A", "G7689A", "A7706C", "C7723T", "A7747T", "G7790A", "A7791G", "A7799C", "T7844C", "G7883A", "G7885A", "C7903A", "C7940A", "G7942C", "G7965A", "A7977G", "A8011G", "T8016C", "G8018A", "C8051A", "G8107A", "T8112C", "G8173A", "G8204A", "T8277C", "T8278C", "G8402A", "G8427A", "G8429A", "A8455G", "A8482G", "A8484-", "C8485-", "-8490G", "-8491C", "A8493G", "A8494G", "C8503A", "A8519G", "G8531T", "A8573G", "-8595C", "A8597G", "C8684T", "G8732T", "A8792C", "G8795C", "C8825T", "A8827T", "T8887A", "A8909G", "G8945A", "G8954A", "C8967T", "C8971T", "C9012T", "A9023C"], "INT": ["T17N", "V72I", "I101L", "T112I", "T125A", "K136N", "T206S"], "RT-p51": ["D123E", "K174R", "T200A", "A207D", "N248E", "D250E", "K277R", "I292V", "L329I", "Q334L", "A376S", "D399E", "F416Y"], "RT-p66": ["D123E", "K174R", "T200A", "A207D", "N248E", "D250E", "K277R", "I292V", "L329I", "Q334L", "A376S", "D399E", "F416Y", "A466V", "K483N"], "gp120": ["N1S", "T2V", "A3T", "N5D", "L6S", "V10I", "T35K", "E59G", "D64K", "E78D", "K93R", "T104S", "D105-", "S109A", "T112V", "-116K", "M121E", "E122G", "N132D", "Q155K", "D157E", "N158E", "-160G", "S162K", "E183D", "N201K", "K204N", "T210N", "K212R", "R224K", "E240D", "R245K", "D251N", "V255N", "R287K", "D294E", "N304T", "S306R", "R307K", "E308K", "K309T", "N311R", "N312K", "T313A", "K315E", "I319R", "-326T", "T330A", "N334T", "S336A", "M345L", "S347H", "T360S", "K361G", "S365G", "-370T", "-372W", "-373N", "-375T", "-377L", "-378N", "-379D", "-380T", "-381E", "-382N", "T385-", "M398R", "G401E", "K412Q", "N435T", "T436N", "A443T", "K462Q", "K472R", "K474R"], "gp41": ["V2I", "M7V", "V69I", "K77Q", "T96N", "T101A", "S104N", "K106R", "Q110Y", "I135L", "E148D", "D163S", "N166H", "V194I", "P213T", "G221E", "E225G", "V238A", "D239N", "I270T", "V301I"], "nef": ["M20I", "G29T", "N47S", "T48-", "N49-", "-50A", "-51G", "A54D", "E63D", "V85L", "E151D", "N162I", "V182E", "V194M"], "p17": ["A54S", "E55A", "D93E", "A118D", "A122G", "G123T", "S124G", "-126S"], "p2": ["N8Q", "T9V", "-10N", "-11T"], "p24": ["I6L", "V11I", "V27I", "S41T", "L83V", "P92A", "T171C", "G225S"], "p6": ["T22A"], "p7": ["S4G", "I12M"], "pro": ["K14R", "G16E", "L63A", "E65D"], "rev": ["S8N", "V16I", "L18I", "P31H", "E32Q", "I55V", "G57E", "T68K", "E87K", "V109I"], "tat": ["F32Y", "V36H", "P59S", "S62N", "T64N", "R78P", "E86K"], "vif": ["V25I", "H30Y", "R37N", "F39L", "K61E", "N122H", "A137T", "N140K", "T167K"], "vpr": ["H45Y"], "vpu": ["P3S", "L4I", "V14I", "S24T", "-71I"]}, "labels": {"aa": "INT: T17N, V72I, I101L, T112I, T125A, K136N, T206S; RT-p51: D123E, K174R, T200A, A207D, N248E, D250E, K277R, I292V, L329I, Q334L, A376S, D399E, F416Y; RT-p66: D123E, K174R, T200A, A207D, N248E, D250E, K277R, I292V, L329I, Q334L, A376S, D399E, F416Y, A466V, K483N; gp120: N1S, T2V, A3T, N5D, L6S, V10I, T35K, E59G, D64K, E78D, K93R, T104S, D105-, S109A, T112V, -116K, M121E, E122G, N132D, Q155K, D157E, N158E, -160G, S162K, E183D, N201K, K204N, T210N, K212R, R224K, E240D, R245K, D251N, V255N, R287K, D294E, N304T, S306R, R307K, E308K, K309T, N311R, N312K, T313A, K315E, I319R, -326T, T330A, N334T, S336A, M345L, S347H, T360S, K361G, S365G, -370T, -372W, -373N, -375T, -377L, -378N, -379D, -380T, -381E, -382N, T385-, M398R, G401E, K412Q, N435T, T436N, A443T, K462Q, K472R, K474R; gp41: V2I, M7V, V69I, K77Q, T96N, T101A, S104N, K106R, Q110Y, I135L, E148D, D163S, N166H, V194I, P213T, G221E, E225G, V238A, D239N, I270T, V301I; nef: M20I, G29T, N47S, T48-, N49-, -50A, -51G, A54D, E63D, V85L, E151D, N162I, V182E, V194M; p17: A54S, E55A, D93E, A118D, A122G, G123T, S124G, -126S; p2: N8Q, T9V, -10N, -11T; p24: I6L, V11I, V27I, S41T, L83V, P92A, T171C, G225S; p6: T22A; p7: S4G, I12M; pro: K14R, G16E, L63A, E65D; rev: S8N, V16I, L18I, P31H, E32Q, I55V, G57E, T68K, E87K, V109I; tat: F32Y, V36H, P59S, S62N, T64N, R78P, E86K; vif: V25I, H30Y, R37N, F39L, K61E, N122H, A137T, N140K, T167K; vpr: H45Y; vpu: P3S, L4I, V14I, S24T, -71I"}}}, {"name": "CRF71_BF1_NODE_0000010", "node_attrs": {"div": 0.14659999999999998, "clade_membership": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G166A", "A167-", "T396C", "A674C", "T1046G", "A1070G", "C1229T", "T1344C", "A1349G", "-1450A", "-1451T", "-1457T", "G2311A", "G2612A", "T2671C", "C2694T", "A2755G", "G2821A", "T3170A", "T3262C", "C3275T", "G3379T", "G3755A", "A3816G", "G3925A", "G4060A", "A4433C", "C4728A", "T4967C", "C5006T", "A5432G", "G5463A", "G5781A", "C5830-", "T5852C", "A6009G", "T6193C", "G6269A", "T6287C", "A6322G", "G6323A", "A6335-", "C6337-", "A6544G", "G6604A", "C6632T", "A6776G", "G6819A", "-6990G", "-6997A", "-6998G", "-7000A", "-7002A", "-7006C", "-7008C", "-7009A", "A7015G", "T7217C", "C7701A", "A7818G", "C7938G", "G8432A", "G8554A", "G8567T", "A8570G", "G8590C"], "INT": ["K14R", "M50I", "I220L"], "RT-p51": ["A173T", "T200I", "S359T", "Q428H"], "RT-p66": ["A173T", "T200I", "S359T", "Q428H"], "gp120": ["N52S", "G117N", "T161-", "R322K", "-328N", "-370S", "-375E"], "gp41": ["D129G", "T133N", "K172R"], "nef": ["R71K", "G83A"], "p17": ["K91R"], "rev": ["S30R"], "tat": ["K19R", "P77A"], "vif": ["F39S", "H48N"]}, "labels": {"aa": "INT: K14R, M50I, I220L; RT-p51: A173T, T200I, S359T, Q428H; RT-p66: A173T, T200I, S359T, Q428H; gp120: N52S, G117N, T161-, R322K, -328N, -370S, -375E; gp41: D129G, T133N, K172R; nef: R71K, G83A; p17: K91R; rev: S30R; tat: K19R, P77A; vif: F39S, H48N"}}, "children": [{"name": "KJ849777", "node_attrs": {"div": 0.18568999999999997, "accession": "KJ849777", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE090"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T201C", "G224A", "C227A", "T228A", "G369A", "G379A", "G407A", "A424G", "A461G", "G471C", "A485G", "C503T", "G508A", "G518A", "G520C", "G542C", "A548G", "A557G", "A571T", "G579A", "C590G", "C623T", "A672G", "A673G", "C697A", "G699A", "G702A", "G703A", "-706A", "A708C", "G709A", "A711-", "A747C", "C749T", "A774C", "G810A", "C827T", "T852A", "A860G", "C893T", "C926T", "A968T", "T1001C", "C1013T", "C1133T", "A1241G", "T1253C", "T1262C", "C1295T", "G1302A", "C1350A", "G1388A", "A1418G", "T1427A", "G1487A", "A1500G", "G1503A", "T1511C", "A1529G", "A1536C", "A1538G", "C1556T", "A1595G", "C1598T", "A1602C", "A1642G", "C1656A", "A1687G", "A1715G", "G1826A", "A1835G", "A1839G", "G1841A", "T1864C", "A1979G", "T2005A", "T2035C", "T2041C", "T2062C", "A2113C", "A2164G", "C2199A", "A2203G", "A2224G", "T2347C", "T2356C", "T2440C", "T2464G", "C2575T", "T2632G", "A2734G", "A2764G", "A2962G", "G3004A", "A3031G", "A3136G", "T3181A", "G3214A", "C3224A", "T3436C", "A3449C", "A3478G", "A3490G", "T3497A", "A3503G", "T3541C", "A3542G", "A3553G", "C3610T", "T3668C", "C3763T", "T3826C", "C3922T", "A3931C", "C3940T", "A3961G", "C3995A", "T4005C", "T4042G", "G4057A", "C4110T", "C4123T", "G4294A", "G4388T", "T4450C", "G4549A", "T4585C", "G4636A", "A4677G", "G4708A", "A4709G", "G4726A", "G4727C", "A4751G", "A4774T", "A4775C", "A4806C", "C4827T", "A4911C", "A4913T", "T4932A", "A4937C", "T4938A", "T4943C", "A4950G", "A4951G", "C4988A", "C4992T", "A5005G", "G5037A", "A5057G", "G5075A", "G5087A", "A5112G", "A5119G", "A5136C", "G5140A", "G5143A", "A5186G", "C5222T", "G5226A", "G5233A", "T5260C", "T5263C", "A5282C", "T5293G", "G5385A", "T5391C", "A5397C", "G5427A", "A5461C", "A5496C", "G5548C", "C5578T", "C5611T", "A5612T", "C5620A", "C5627T", "A5751C", "A5787T", "T5788G", "T5789A", "C5792A", "C5795A", "T5799G", "G5801C", "G5802C", "A5804C", "A5806C", "G5808T", "-5815G", "-5816A", "-5817T", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824C", "-5825C", "-5826T", "-5827C", "-5828T", "-5829T", "-5830G", "C5831T", "C5833A", "T5838G", "A5845-", "A5846-", "T5847-", "G5856A", "G5866A", "A5868G", "T5870C", "T5871C", "A5972G", "T5980C", "A6044G", "G6065A", "A6158C", "C6160T", "C6165A", "T6172C", "-6180C", "C6183A", "C6189A", "A6191G", "A6192C", "G6195C", "T6199C", "G6207C", "A6209G", "-6211A", "C6213A", "G6217A", "A6219G", "G6260A", "-6268T", "A6270T", "A6300C", "T6307A", "T6310C", "A6319T", "A6324G", "T6325C", "-6333G", "A6338-", "G6339-", "C6340-", "G6346A", "C6361T", "A6370C", "G6391A", "C6397T", "G6463A", "A6508G", "T6523C", "G6588A", "G6617A", "T6618A", "T6641G", "C6692A", "A6788G", "C6790G", "T6808A", "A6822C", "-6835T", "T6856A", "T6860G", "A6947G", "C6951T", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964G", "-6965A", "-6966C", "T6976-", "-6980C", "-6981A", "-6982C", "-6983T", "-6984T", "-6985A", "-6999G", "-7001G", "-7004G", "-7005A", "C7018T", "G7026A", "A7032G", "A7042T", "C7045T", "A7138G", "A7149T", "A7151G", "T7153A", "A7157G", "A7158G", "A7161C", "G7162C", "A7231G", "A7238C", "A7241G", "C7267A", "G7270T", "T7313C", "A7322G", "A7373G", "G7440A", "C7463A", "C7517A", "G7549T", "T7579C", "A7589G", "C7605A", "A7629G", "T7633A", "A7641G", "C7645T", "A7655C", "G7657A", "G7660A", "T7691A", "C7699T", "C7755A", "A7759G", "A7763C", "T7801G", "A7807G", "A7819G", "A7868G", "C7869T", "T7884C", "G7885A", "C7903T", "A7915G", "A7932G", "A7936C", "G7937A", "A7943G", "A7974G", "G7987C", "C8026A", "C8047T", "A8050G", "T8112C", "A8143G", "C8146A", "G8204A", "T8218C", "G8242A", "G8276T", "A8297G", "G8323T", "T8337A", "A8364C", "G8365T", "T8369A", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "T8375-", "C8382T", "G8385A", "G8418A", "T8440C", "T8452A", "A8455C", "A8459C", "A8461G", "A8474C", "C8485T", "C8503A", "T8505A", "G8531T", "G8537T", "-8595G"], "INT": ["L74M", "V77A", "I89M", "T112I", "A205S"], "RT-p51": ["E6D", "T35K", "D123E", "Q377I"], "RT-p66": ["E6D", "T35K", "D123E", "Q377I", "K452Q", "S468T", "T470A", "K483E", "A554T"], "gp120": ["N5G", "L6P", "I40V", "D71N", "N102H", "T104N", "D105-", "S109A", "S114T", "T115N", "-116A", "N117T", "-120E", "M121T", "G123K", "D136N", "-139I", "K141R", "K142-", "Y145H", "L147I", "Y149S", "Q155H", "D157S", "D159N", "R245K", "V255N", "S263A", "H280N", "N312E", "E323A", "N334K", "S336A", "S365G", "T366I", "G369N", "-372E", "-373G", "-377G", "R391K", "K393R", "N432I", "N433G", "N435G", "K462Q", "I463V", "K472N"], "gp41": ["M7V", "I24V", "R46K", "L54M", "L72M", "T96A", "T101N", "N109S", "E113G", "R118Q", "L130I", "A151E", "K154Q", "N166K", "T189V", "V194A", "H210R", "A212S", "R214G", "E224G", "E228D", "F241L", "I270T", "V301I", "A325F", "I332V", "L340F", "L345Q"], "nef": ["S8L", "S9R", "I10-", "V11-", "P14S", "A15T", "A26T", "V33A", "K39N", "H40R", "T48I", "A54D", "C55S", "E63D", "E65D"], "p1": ["K4R", "H9N"], "p17": ["E12K", "R15Q", "K30R", "V46L", "R58K", "G62A", "Q69H", "Y79F", "V82I", "K113G", "A121D", "A122T", "G123K", "S124N", "S125H"], "p24": ["I6L", "I15L", "V27I", "S41T", "E79D", "V191I", "P207T"], "p6": ["N3S", "K32N"], "p7": ["S4G", "I12V", "V13I", "I24L", "M46L"], "pro": ["V10M", "I13V", "K14R", "V15I", "N61D", "H69Q"], "rev": ["E11D", "R30Q", "E32G", "E47Q", "L60I", "P67S", "T68A", "N99D", "P100T"], "tat": ["R7S", "K29Q", "A58P", "P68S", "T75A", "Q76P"], "vif": ["R17K", "I31V", "R41K", "R47N", "K63I", "T74P", "I109L", "S116T", "E117D", "S118T", "N122G", "D134E", "P136S", "N140S", "A151T", "K176E", "Q178R", "K184Q", "G185E", "S186N"], "vpr": ["Q3R", "Q11P", "T28A", "H40Y", "S41N", "I60L", "I63M", "G94S", "S96P"], "vpu": ["Q2L", "Q5K", "A7V", "E48D", "-71V", "-76P"]}, "labels": {"aa": "INT: L74M, V77A, I89M, T112I, A205S; RT-p51: E6D, T35K, D123E, Q377I; RT-p66: E6D, T35K, D123E, Q377I, K452Q, S468T, T470A, K483E, A554T; gp120: N5G, L6P, I40V, D71N, N102H, T104N, D105-, S109A, S114T, T115N, -116A, N117T, -120E, M121T, G123K, D136N, -139I, K141R, K142-, Y145H, L147I, Y149S, Q155H, D157S, D159N, R245K, V255N, S263A, H280N, N312E, E323A, N334K, S336A, S365G, T366I, G369N, -372E, -373G, -377G, R391K, K393R, N432I, N433G, N435G, K462Q, I463V, K472N; gp41: M7V, I24V, R46K, L54M, L72M, T96A, T101N, N109S, E113G, R118Q, L130I, A151E, K154Q, N166K, T189V, V194A, H210R, A212S, R214G, E224G, E228D, F241L, I270T, V301I, A325F, I332V, L340F, L345Q; nef: S8L, S9R, I10-, V11-, P14S, A15T, A26T, V33A, K39N, H40R, T48I, A54D, C55S, E63D, E65D; p1: K4R, H9N; p17: E12K, R15Q, K30R, V46L, R58K, G62A, Q69H, Y79F, V82I, K113G, A121D, A122T, G123K, S124N, S125H; p24: I6L, I15L, V27I, S41T, E79D, V191I, P207T; p6: N3S, K32N; p7: S4G, I12V, V13I, I24L, M46L; pro: V10M, I13V, K14R, V15I, N61D, H69Q; rev: E11D, R30Q, E32G, E47Q, L60I, P67S, T68A, N99D, P100T; tat: R7S, K29Q, A58P, P68S, T75A, Q76P; vif: R17K, I31V, R41K, R47N, K63I, T74P, I109L, S116T, E117D, S118T, N122G, D134E, P136S, N140S, A151T, K176E, Q178R, K184Q, G185E, S186N; vpr: Q3R, Q11P, T28A, H40Y, S41N, I60L, I63M, G94S, S96P; vpu: Q2L, Q5K, A7V, E48D, -71V, -76P"}}}, {"name": "KJ849762", "node_attrs": {"div": 0.17908999999999997, "accession": "KJ849762", "clade_membership": {"value": "CRF71_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE025"}, "LANL_subtype": {"value": "CRF71_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["-50C", "T163G", "C207A", "G215A", "A235G", "A302T", "-305A", "T306G", "G354A", "A425G", "T482G", "A499C", "T534G", "G615A", "G641A", "A680C", "A682C", "A692G", "C698T", "A701G", "A705-", "C707-", "-712G", "-713T", "A758G", "T861G", "A899G", "A977G", "C1004T", "A1049G", "A1089G", "T1091C", "A1205G", "A1250G", "G1277A", "T1280G", "T1322C", "G1421A", "G1476A", "C1490G", "G1498A", "T1628C", "A1670G", "G1691A", "G1725A", "C1730T", "G1736A", "A1738G", "A1774C", "G1780A", "C1831T", "A1857G", "T2005C", "G2023A", "G2026A", "G2038A", "T2083C", "G2177A", "A2230G", "G2273A", "A2305G", "A2368G", "C2452T", "T2499C", "G2539A", "T2579A", "T2602G", "C2604T", "G2610A", "T2689C", "T2719C", "C2723T", "A2836C", "T2863C", "G2926A", "G2974A", "T3013C", "G3019A", "C3023T", "A3097G", "G3221T", "T3225A", "G3283A", "A3450G", "A3457G", "T3469C", "T3472C", "T3497C", "G3523A", "T3559C", "C3602T", "T3644A", "G3667A", "C3688T", "C3691T", "G3694A", "A3697C", "C3756G", "T3778C", "A3808C", "T3844C", "T3856C", "G3884A", "A3949T", "T4006G", "G4051A", "A4093T", "C4140T", "T4195C", "G4267A", "A4376G", "A4391T", "A4420C", "A4439G", "C4576T", "C4667T", "G4696A", "A4709C", "G4737A", "A4768C", "A4838T", "G4862A", "G4887A", "G4982T", "C5034T", "A5063G", "T5081C", "C5086A", "T5170C", "A5248G", "T5293C", "T5359C", "G5366A", "A5372G", "T5424C", "G5437C", "A5462T", "C5479A", "A5480T", "T5492C", "C5513A", "G5548A", "C5551T", "C5559T", "A5560G", "T5576C", "T5577A", "C5578A", "C5581A", "C5602T", "C5620T", "A5622C", "G5644A", "C5654G", "A5702G", "G5810A", "T5832C", "C5833T", "T5834C", "G5836T", "A5839T", "-5842T", "-5843A", "-5844T", "C5859T", "G5861A", "G5867A", "A5896G", "C5989A", "G6020A", "A6023C", "T6046G", "T6134C", "T6166A", "A6167G", "T6178C", "-6180G", "A6185G", "G6198C", "A6200G", "A6201G", "C6202G", "G6203A", "G6205T", "G6207A", "A6208T", "-6211G", "G6215A", "-6268C", "T6271A", "G6276A", "A6278C", "A6288G", "A6293T", "T6295G", "C6320G", "T6321A", "A6330G", "A6332-", "T6334-", "T6351G", "G6368A", "T6369A", "A6370G", "G6379A", "G6403T", "C6483T", "C6563T", "G6581A", "C6601T", "C6619T", "A6628G", "T6641A", "G6647A", "C6670T", "G6714A", "T6717C", "G6743A", "A6773G", "G6774A", "A6777G", "T6787G", "A6798G", "A6799G", "A6833-", "A6834-", "A6840G", "A6841C", "A6858C", "T6885C", "G6905A", "C6919T", "C6951A", "-6968A", "-6969C", "-6970G", "-6971G", "-6972G", "-6973T", "-6974A", "-6975G", "-6977G", "-6978A", "-6999A", "-7001A", "-7004A", "-7005C", "A7088C", "A7093G", "G7101A", "A7102T", "A7112G", "A7149G", "T7192G", "A7237G", "A7268C", "G7291A", "A7399T", "G7465A", "G7519A", "A7532C", "T7626A", "T7630C", "C7631T", "A7656G", "G7668A", "T7678G", "T7708A", "A7711G", "A7722T", "A7744G", "T7751C", "A7871G", "A7891G", "G7892A", "T7968C", "C7969A", "C8065T", "A8104G", "G8107A", "C8145T", "A8170G", "G8181T", "G8208A", "T8277C", "A8288T", "C8291A", "A8294C", "G8323A", "A8338T", "A8378G", "G8402A", "C8415A", "G8453A", "A8456G", "C8460T", "A8482G", "T8483C", "A8497G", "T8509C", "G8534A", "G8537A", "A8571C", "-8595A", "C8601A", "T8603G"], "INT": ["E11D", "V37I", "T122I", "I201V", "T206S", "K215N", "N222D"], "RT-p51": ["E28K", "V60I", "I135T", "C162S", "D169E", "P170L", "R172K", "A376S"], "RT-p66": ["E28K", "V60I", "I135T", "C162S", "D169E", "P170L", "R172K", "A376S", "K452R", "S468P", "L517I", "A554S"], "gp120": ["N1S", "T2I", "A3T", "V56I", "K57Q", "D64K", "-106A", "-107T", "N111A", "-116G", "S118N", "N119K", "-120T", "-139K", "K142Q", "K143-", "Y145R", "L156E", "D157N", "D159S", "I166R", "V172K", "E183D", "T210I", "V243I", "S263T", "E265K", "R287K", "V288A", "D297N", "R307E", "E308G", "N311K", "K315R", "N327-", "K329S", "Q335P", "I344T", "G351R", "T366N", "N368T", "T371E", "-372N", "-373S", "D374T", "K376E", "-377N", "-378T", "-379N", "-380T", "K412Q", "R416N", "N420D", "N432S", "N433S", "T436K", "D446E", "K472Q"], "gp41": ["Q32H", "K77Q", "L108Q", "Q110Y", "R122K", "D125E", "N140I", "I190V", "V197I", "A212G", "I222T", "T281I", "S293I", "S302N", "I329F", "L330I", "N331H"], "nef": ["M20I", "P25T", "G38E", "H40Y", "N47S", "-50S", "N52-", "V56A", "V85I", "L87M"], "p17": ["V7I", "E55A", "S67A", "V94I", "K113N", "Q116P"], "p24": ["S44A", "S120G"], "p6": ["G16R", "E20G", "K32T", "G34E", "S51L"], "p7": ["R11K"], "pro": ["K20R"], "rev": ["A15V", "F21Q", "L73F", "N86D", "E87K", "T108A", "E111D"], "tat": ["A21P", "K29I", "Q35I", "I39T", "S46Y", "A58T", "P59S", "S62G", "V67A", "P68T", "L69I", "S87Q"], "vif": ["R37K", "R41S", "V51I", "K61T", "G101S", "R132S", "T167K"], "vpr": ["L85P"], "vpu": ["Q5Y", "V13I", "A16G", "K32R", "G68E", "P69-", "L70-", "I72-", "G73-", "N74-", "N75-"]}, "labels": {"aa": "INT: E11D, V37I, T122I, I201V, T206S, K215N, N222D; RT-p51: E28K, V60I, I135T, C162S, D169E, P170L, R172K, A376S; RT-p66: E28K, V60I, I135T, C162S, D169E, P170L, R172K, A376S, K452R, S468P, L517I, A554S; gp120: N1S, T2I, A3T, V56I, K57Q, D64K, -106A, -107T, N111A, -116G, S118N, N119K, -120T, -139K, K142Q, K143-, Y145R, L156E, D157N, D159S, I166R, V172K, E183D, T210I, V243I, S263T, E265K, R287K, V288A, D297N, R307E, E308G, N311K, K315R, N327-, K329S, Q335P, I344T, G351R, T366N, N368T, T371E, -372N, -373S, D374T, K376E, -377N, -378T, -379N, -380T, K412Q, R416N, N420D, N432S, N433S, T436K, D446E, K472Q; gp41: Q32H, K77Q, L108Q, Q110Y, R122K, D125E, N140I, I190V, V197I, A212G, I222T, T281I, S293I, S302N, I329F, L330I, N331H; nef: M20I, P25T, G38E, H40Y, N47S, -50S, N52-, V56A, V85I, L87M; p17: V7I, E55A, S67A, V94I, K113N, Q116P; p24: S44A, S120G; p6: G16R, E20G, K32T, G34E, S51L; p7: R11K; pro: K20R; rev: A15V, F21Q, L73F, N86D, E87K, T108A, E111D; tat: A21P, K29I, Q35I, I39T, S46Y, A58T, P59S, S62G, V67A, P68T, L69I, S87Q; vif: R37K, R41S, V51I, K61T, G101S, R132S, T167K; vpr: L85P; vpu: Q5Y, V13I, A16G, K32R, G68E, P69-, L70-, I72-, G73-, N74-, N75-"}}}]}]}]}]}]}]}]}, {"name": "NODE_0000197", "node_attrs": {"div": 0.11142, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-36C", "A455G", "C897T", "-1452T", "G1588A", "C2199T", "A2206C", "A2230G", "G2407A", "G2431T", "G2461A", "T2464A", "C2476T", "C2485T", "G2498A", "C2500A", "A2518G", "C2527T", "A2548G", "T2579A", "T2602G", "C2605T", "C2613A", "A2615C", "C2638T", "G2665A", "G2707A", "T2708C", "A2710G", "T2740C", "A2761G", "C2770T", "G2788T", "C2828G", "A2829T", "A2830G", "T2831C", "C2839A", "G2842A", "T2863C", "A2878G", "C2885T", "A2887G", "G2951A", "G2974A", "G2980A", "T2983A", "C2985A", "T2996C", "T3002C", "T3013C", "A3046G", "G3058A", "A3088G", "A3091G", "G3100C", "A3142G", "A3162G", "T3170G", "C3171G", "A3205G", "G3217A", "T3223C", "T3225C", "G3264A", "T3276A", "T3292A", "C3368T", "T3376C", "C3387A", "G3391A", "C3399T", "C3412T", "A3439G", "G3508C", "T3545C", "A4376G", "A4782G", "T4976C", "G5626T", "G5790A", "A5842G", "C6202T", "G6260A", "A6266G", "A6776G", "A6848G", "-6960A", "-6962A", "-6965A", "-6967T", "-6990A", "A7089G", "A7160G", "A7375G", "C7561T", "G8008T", "C8215T", "T8232C", "T8504C"], "INT": ["I201V"], "RT-p51": ["T35V", "V135I", "C162S", "D169E", "A173K", "K174Q", "Q245V", "D248E", "A286T", "T297K", "K356R", "S359G", "R390K", "L394Q", "D399E", "T431K", "A435V"], "RT-p66": ["T35V", "V135I", "C162S", "D169E", "A173K", "K174Q", "Q245V", "D248E", "A286T", "T297K", "K356R", "S359G", "L377T", "R390K", "L394Q", "D399E", "T431K", "A435V", "E471D"], "gp120": ["N5K", "-109N", "-371T"], "gp41": ["I24V", "N96A", "D110E", "V310A"], "nef": ["I133V"], "p2": ["-10S"], "p7": ["R41K"], "rev": ["E11D", "A54S"], "vif": ["I66V"]}, "labels": {"aa": "INT: I201V; RT-p51: T35V, V135I, C162S, D169E, A173K, K174Q, Q245V, D248E, A286T, T297K, K356R, S359G, R390K, L394Q, D399E, T431K, A435V; RT-p66: T35V, V135I, C162S, D169E, A173K, K174Q, Q245V, D248E, A286T, T297K, K356R, S359G, L377T, R390K, L394Q, D399E, T431K, A435V, E471D; gp120: N5K, -109N, -371T; gp41: I24V, N96A, D110E, V310A; nef: I133V; p2: -10S; p7: R41K; rev: E11D, A54S; vif: I66V"}}, "children": [{"name": "results/subtype_trees/CRF47_BF1.nwk", "node_attrs": {"div": 0.15344000000000002, "clade_membership": {"value": "CRF47_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A78G", "C80G", "A98-", "G99-", "T100-", "T103-", "G106-", "T156-", "T200C", "T201C", "G224A", "A263T", "A374G", "G407A", "A417C", "A428G", "A470C", "A485G", "G607A", "A611C", "C641T", "C679T", "C707T", "G709A", "C747G", "C773T", "A776T", "A806G", "A809G", "G818A", "C827T", "C902T", "T936C", "T1055C", "G1192A", "C1229T", "A1242G", "C1243T", "T1253C", "C1292A", "G1353C", "G1354A", "G1388A", "A1400G", "T1403C", "G1412A", "T1427A", "G1430A", "-1455A", "C1456A", "-1459T", "-1460C", "T1478C", "C1481T", "T1483A", "G1498A", "T1505C", "T1514C", "A1580G", "T1682C", "C1724G", "C1730T", "A1774T", "C1787T", "C1853A", "A1968G", "A1979C", "C1981A", "C2003A", "C2005G", "G2008A", "G2023A", "G2074A", "A2131G", "T2158C", "A2176G", "T2236C", "C2326T", "G2392A", "G2422A", "G2456T", "A2459G", "G2539A", "C2575T", "T2581C", "A2617G", "T2632G", "G2714C", "A2734G", "A2773C", "T2908C", "A2925G", "T2935C", "A2937G", "G3019A", "C3023T", "A3124G", "A3163G", "T3165C", "A3192G", "A3196G", "G3221A", "A3247G", "G3250A", "A3367G", "G3398A", "G3473A", "C3475T", "G3477A", "A3481G", "A3514C", 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"-5815G", "-5816A", "-5817A", "-5818A", "-5819G", "-5820G", "-5821G", "-5822G", "-5823G", "C5862A", "A5869G", "G6020A", "A6022G", "G6023T", "G6088A", "C6097T", "C6139A", "C6145T", "T6154C", "C6165-", "G6179A", "-6180A", "-6205G", "A6208G", "-6211A", "-6212A", "-6213C", "-6214A", "-6216T", "-6217A", "-6221G", "A6222G", "C6238T", "A6263G", "T6264G", "T6271G", "T6276-", "G6277-", "C6278-", "A6316G", "A6320T", "T6321C", "A6324G", "T6325A", "A6326T", "T6328A", "T6331C", "G6392A", "G6430A", "A6464C", "C6545T", "T6562C", "G6577T", "G6581A", "T6586C", "A6589G", "G6593C", "T6599A", "G6604A", "C6607T", "T6613A", "C6618G", "G6644A", "G6647A", "A6648G", "A6649C", "A6668G", "A6669G", "A6686G", "-6697G", "G6714A", "A6715G", "C6717T", "G6743A", "G6774A", "A6798G", "T6808C", "C6810G", "C6892T", "G6894C", "T6901C", "C6935T", "A6936C", "T6952A", "-6956A", "-6957A", "-6959G", "-6963C", "-6964A", "-6966A", "-6971A", "-6972T", "-6973T", "-6974A", "-6975C", "-6978A", "-6979A", "-6980G", "-6981A", "-6982G", 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"C8948T", "C9012T"], "INT": ["S17N", "I101L", "M154I", "S283G"], "RT-p51": ["D121Y", "K122E", "D123E", "E207Q", "K277R", "K281R", "M357T", "K366R", "A376T", "V435I"], "RT-p66": ["D121Y", "K122E", "D123E", "E207Q", "K277R", "K281R", "M357T", "K366R", "A376T", "V435I", "D460N", "R461K", "H483L", "S519N", "K527N", "A534S"], "gp120": ["A3E", "V56M", "V57L", "T104-", "N105-", "-116S", "-117G", "-120T", "-123G", "S136Q", "I137T", "D139G", "K140R", "Q142-", "K150N", "P155Q", "I156S", "D157E", "N158S", "V180I", "K204Q", "E241D", "V243I", "E247Q", "F249I", "T255S", "V264I", "E265S", "N272G", "I281M", "R287K", "A288V", "D297N", "R307K", "K315R", "K319R", "S347T", "Q361S", "P389Q", "R391K", "Q414Y", "R416N", "L425I", "T427V", "N434S", "R448K", "V468I"], "gp41": ["I4F", "M7L", "T25A", "L54M", "L108Y", "E119Q", "L130V", "T133S", "E136A", "E137Q", "L210H", "E220G", "L237S", "V238A", "D239S", "A243T", "D247I", "R259H", "V267A", "A281L", "W285C", "V301I"], "nef": ["G3N", "M20I", "D28E", "A53P", "C55L", "E63D", "Q104R", "D174E", "P176E", "E177D"], "p17": ["K28Q", "S125N"], "p2": ["A11N", "T12V"], "p24": ["R154K", "T171V", "D187E", "G208Q"], "p6": ["F15L", "D32E", "E33-"], "p7": ["S4G", "F6Y", "R11K"], "pro": ["L19I", "K57R", "N61Q", "H69K"], "rev": ["T15A", "F21I", "G57E", "W58R", "H63Y", "G65D", "S99T"], "tat": ["K19R", "A58P", "D61G", "V67D", "S75T", "K85E"], "vif": ["M29I", "I31T", "G37K", "T47R", "G60E", "A62E", "K63N", "K91Q", "R93K", "N122K", "I128R", "D134N", "T155A", "P156T", "I159T", "K167Q", "T170V", "G185E"], "vpr": ["E48N", "A55E", "Q77N", "A89T"], "vpu": ["Q5E", "I18L", "T24S", "I39V", "R41K", "-74L"]}, "labels": {"aa": "INT: S17N, I101L, M154I, S283G; RT-p51: D121Y, K122E, D123E, E207Q, K277R, K281R, M357T, K366R, A376T, V435I; RT-p66: D121Y, K122E, D123E, E207Q, K277R, K281R, M357T, K366R, A376T, V435I, D460N, R461K, H483L, S519N, K527N, A534S; gp120: A3E, V56M, V57L, T104-, N105-, -116S, -117G, -120T, -123G, S136Q, I137T, D139G, K140R, Q142-, K150N, P155Q, I156S, D157E, N158S, V180I, K204Q, E241D, V243I, E247Q, F249I, T255S, V264I, E265S, N272G, I281M, R287K, A288V, D297N, R307K, K315R, K319R, S347T, Q361S, P389Q, R391K, Q414Y, R416N, L425I, T427V, N434S, R448K, V468I; gp41: I4F, M7L, T25A, L54M, L108Y, E119Q, L130V, T133S, E136A, E137Q, L210H, E220G, L237S, V238A, D239S, A243T, D247I, R259H, V267A, A281L, W285C, V301I; nef: G3N, M20I, D28E, A53P, C55L, E63D, Q104R, D174E, P176E, E177D; p17: K28Q, S125N; p2: A11N, T12V; p24: R154K, T171V, D187E, G208Q; p6: F15L, D32E, E33-; p7: S4G, F6Y, R11K; pro: L19I, K57R, N61Q, H69K; rev: T15A, F21I, G57E, W58R, H63Y, G65D, S99T; tat: K19R, A58P, D61G, V67D, S75T, K85E; vif: M29I, I31T, G37K, T47R, G60E, A62E, K63N, K91Q, R93K, N122K, I128R, D134N, T155A, P156T, I159T, K167Q, T170V, G185E; vpr: E48N, A55E, Q77N, A89T; vpu: Q5E, I18L, T24S, I39V, R41K, -74L", "clade": "CRF47_BF1"}}, "children": [{"name": "KJ849798", "node_attrs": {"div": 0.18715, "accession": "KJ849798", "clade_membership": {"value": "CRF47_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_RJ026"}, "LANL_subtype": {"value": "CRF47_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C227A", "T263G", "C281A", "A304T", "A319T", "G379A", "G455A", "A500C", "A585G", "C586T", "C590T", "G677A", "G678A", "C713T", "G740A", "G747A", "A774T", "T776G", "T861G", "G956T", "T1028A", "T1046G", "C1209T", "G1242T", "T1243G", "C1261G", "A1292G", "T1299C", "A1337G", "G1405C", "A1442G", "-1458C", "A1463G", "A1500T", "A1543G", "A1589C", "T1646G", "A1670G", "T1728C", "T1729G", "A1733G", "A1735-", "G1736-", "G1737-", "A1738-", "G1739-", "A1740-", "T1741-", "A1742-", "A1743-", "C1744-", "C1745-", "C1749-", "C1750-", "C1751-", "T1752-", "C1753-", "T1754-", "C1755-", "C1756-", "G1757-", "A1758-", "A1759-", "G1760-", "C1761-", "C1767A", "G1773A", "A1819G", "A1828G", "C1985G", "A1988T", "T2101C", "A2125G", "A2198G", "G2230A", "A2254G", "G2387T", "T2453C", "A2457G", "A2463G", "A2633G", "G2656A", "A2693G", "A2728G", "G2804A", "G2828A", "A2923G", "A2950G", "A2951G", "C2960T", "C3013T", "A3037G", "G3046A", "T3049C", "A3079G", "G3094A", "A3259G", "G3442A", "A3478G", "A3490G", "C3499T", "A3772G", "T3778C", "A3805C", "A3825C", "C3859T", "A4102T", "C4132T", "T4276G", "A4305T", "G4475A", "A4498G", "T4585C", "C4643T", "G4727A", "A4737G", "G4802A", "A4951G", "T5018G", "G5082A", "C5125T", "A5200G", "C5221T", "C5294A", "G5382T", "A5400G", "T5454C", "T5471A", "G5482A", "T5483G", "C5611T", "A5612C", "A5621T", "G5668A", "G5700A", "A5760G", "C5769T", "G5775A", "G5781T", "A5790G", "C5797T", "G5861-", "A5862-", "A5863-", "C5917T", "C6052T", "-6165A", "G6167A", "-6170A", "-6171C", "-6172T", "-6175C", "A6177C", "T6178C", "A6186G", "G6195C", "-6204A", "G6205A", "A6206G", "-6207G", "-6210A", "A6212G", "G6274-", "A6292T", "A6304T", "G6311A", "A6327C", "A6328G", "C6361T", "G6403A", "T6457A", "T6487C", "C6601T", "C6667T", "C6766T", "C6777T", "A6785G", "A6817C", "G6821A", "G6848A", "C6850A", "A6854G", "G6905A", "T6935G", "C6936T", "-6961G", "C6975A", "-6977C", "-7000A", "-7001A", "-7002C", "C7008T", "A7020G", "C7087T", "A7097C", "C7102T", "C7170T", "A7269G", "G7426A", "G7508C", "A7522G", "A7547T", "T7630G", "G7660A", "A7668G", "A7672G", "G7689A", "A7720C", "A7764C", "G7777A", "G7790A", "C7801T", "G7868A", "A7929G", "C7931T", "G7937A", "C7941A", "G8007A", "A8029G", "C8047T", "A8152G", "C8238G", "A8405G", "A8456C", "G8490A", "T8498C", "C8543A", "C8546T", "G8562A", "T8595G", "C8651T", "G8666T", "A8678T", "A8750C", "T8759A", "G8784A", "T8786G", "C8789A", "G8798T", "A8844G", "G8918C", "C8934A", "T8935A", "A8947T", "T8966C", "C8967T", "G8970A"], "INT": ["E10D", "N17T", "T124A", "D167E", "Q177L", "V234I"], "RT-p51": ["A98S", "Y121C", "E123G", "I180V", "T200A", "D237N", "V245M", "T286A"], "RT-p66": ["A98S", "Y121C", "E123G", "I180V", "T200A", "D237N", "V245M", "T286A"], "gp120": ["E3-", "S114T", "-118K", "-119A", "T120I", "-121E", "E122G", "G124E", "V153I", "E157S", "S158G", "N201K", "S278G", "D294A", "N311D", "L321F", "E323K", "-328N", "V332I", "N334D", "G351R", "S361V", "-368N", "-370S", "T385I", "Q389R", "I415L", "V427I", "N433S", "S434T", "T439I", "K472R"], "gp41": ["V69L", "A96T", "D109E", "E110Q", "D113E", "K122R", "Q139H", "K154T", "D163N", "A189T", "H209R", "H210Y", "A212T", "P213Q", "G235D", "C253F", "A312G"], "nef": ["E38D", "K39R", "A50T", "V74M", "E108D", "V133I", "F139L", "V148M", "D149E", "E152D", "M168V", "E176A", "L198K", "Y202F"], "p1": ["I5M"], "p17": ["R15K", "E55D", "T84V", "A115I"], "p2": ["V12L", "I13M"], "p24": ["I15L", "S44A", "E75D", "P160S", "V171C", "A177G", "G225A"], "p6": ["A12E", "S14K", "L15K", "G16I", "F17E", "E19-", "E20-", "I21-", "T22-", "P23-", "S24-", "P25-", "K27-", "Q28-", "E29-", "Q30-", "K31-", "E32-", "G34-", "N47S", "*50W"], "p7": ["I12F", "K26R", "K41N"], "pro": ["L63V", "I64L"], "rev": ["P28L", "S30N", "S61D", "P67S", "T68A", "I102V", "V104L"], "tat": ["E2D", "F32Y", "V36S", "T74A"], "vif": ["K37E", "I51V", "N63T", "K122R", "V166I", "T180I"], "vpr": ["L64M", "A93S"], "vpu": ["Q2S", "E5V", "V21I", "L27F", "D44A", "R47I", "E58D", "M67R"]}, "labels": {"aa": "INT: E10D, N17T, T124A, D167E, Q177L, V234I; RT-p51: A98S, Y121C, E123G, I180V, T200A, D237N, V245M, T286A; RT-p66: A98S, Y121C, E123G, I180V, T200A, D237N, V245M, T286A; gp120: E3-, S114T, -118K, -119A, T120I, -121E, E122G, G124E, V153I, E157S, S158G, N201K, S278G, D294A, N311D, L321F, E323K, -328N, V332I, N334D, G351R, S361V, -368N, -370S, T385I, Q389R, I415L, V427I, N433S, S434T, T439I, K472R; gp41: V69L, A96T, D109E, E110Q, D113E, K122R, Q139H, K154T, D163N, A189T, H209R, H210Y, A212T, P213Q, G235D, C253F, A312G; nef: E38D, K39R, A50T, V74M, E108D, V133I, F139L, V148M, D149E, E152D, M168V, E176A, L198K, Y202F; p1: I5M; p17: R15K, E55D, T84V, A115I; p2: V12L, I13M; p24: I15L, S44A, E75D, P160S, V171C, A177G, G225A; p6: A12E, S14K, L15K, G16I, F17E, E19-, E20-, I21-, T22-, P23-, S24-, P25-, K27-, Q28-, E29-, Q30-, K31-, E32-, G34-, N47S, *50W; p7: I12F, K26R, K41N; pro: L63V, I64L; rev: P28L, S30N, S61D, P67S, T68A, I102V, V104L; tat: E2D, F32Y, V36S, T74A; vif: K37E, I51V, N63T, K122R, V166I, T180I; vpr: L64M, A93S; vpu: Q2S, E5V, V21I, L27F, D44A, R47I, E58D, M67R"}}}, {"name": "CRF47_BF1_NODE_0000001", "node_attrs": {"div": 0.16078000000000003, "clade_membership": {"value": "CRF47_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["-305A", "G644A", "G712A", "T748C", "G762A", "G771C", "G870T", "C871G", "A1115T", "C1220T", "A1226G", "A1271T", "G1311T", "T1385C", "A1450C", "-1458G", "A1486G", "A1499G", "A1508G", "A1525G", "C1656A", "C1679T", "A1835G", "G2173A", "A2380G", "T2431A", "A2590G", "C2797A", "G2847A", "G2926A", "A2989G", "T3118C", "G3154A", "A3164T", "G3166A", "A3279G", "G3307C", "T3436C", "C3857A", "T3909A", "A4012G", "G4145A", "G4268A", "A4303G", "G4495A", "A4522G", "A4642G", "C4645A", "G4695A", "G4735A", "C4771A", "T5197C", "T5245C", "A5460G", "T5600C", "C5614T", "T5641C", "C5679T", "C5727T", "T5778C", "A6076T", "C6318A", "C6632T", "C6673T", "-6961T", "-6994A", "-6995G", "-6996A", "A7046T", "A7133G", "A7158G", "C7164G", "A7398T", "C7544A", "A7589G", "G7688A", "T7692A", "A7713T", "C7939T", "T8164C", "G8170A", "G8255A", "A8275T", "A8288G", "G8385A", "C8419T", "A8455G", "A8459G", "A8516G", "G8537A", "C8590G", "A8597C", "C8607T", "A8608T", "C8684T", "A8739G", "A8744G", "C8751T", "C8869A", "G8905A", "T9029A"], "INT": ["L28I", "L45Q", "V165I"], "RT-p51": ["V35I", "S251N", "T357S", "K395R", "E404D"], "RT-p66": ["V35I", "S251N", "T357S", "K395R", "E404D"], "gp120": ["E74D", "N109T", "M398L", "N435T", "T437S"], "gp41": ["Q32L", "L81I", "L82M", "D129N", "V130E", "Q137L", "V318I", "R324S", "I329V"], "nef": ["A15T", "A26V", "E38G", "A83G", "V85F", "H89F", "R188H", "H192Q"], "p17": ["S126N"], "p24": ["I6A", "V11I", "A14P", "A47C", "E128D", "E180D", "A194S"], "p7": ["K7R", "K20R"], "pro": ["I13V"], "rev": ["P31S", "S106P", "A108T"], "tat": ["P77L"], "vif": ["N19S", "T20K", "R50K"], "vpu": ["P3S"]}, "labels": {"aa": "INT: L28I, L45Q, V165I; RT-p51: V35I, S251N, T357S, K395R, E404D; RT-p66: V35I, S251N, T357S, K395R, E404D; gp120: E74D, N109T, M398L, N435T, T437S; gp41: Q32L, L81I, L82M, D129N, V130E, Q137L, V318I, R324S, I329V; nef: A15T, A26V, E38G, A83G, V85F, H89F, R188H, H192Q; p17: S126N; p24: I6A, V11I, A14P, A47C, E128D, E180D, A194S; p7: K7R, K20R; pro: I13V; rev: P31S, S106P, A108T; tat: P77L; vif: N19S, T20K, R50K; vpu: P3S"}}, "children": [{"name": "FJ670529", "node_attrs": {"div": 0.17981000000000003, "accession": "FJ670529", "clade_membership": {"value": "CRF47_BF1"}, "country": {"value": "ES"}, "date": {"value": 2008.0}, "Strain_name": {"value": "X2457_2"}, "LANL_subtype": {"value": "CRF47_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A101-", "G102-", "G104-", "T105-", "T107-", "G108-", "C109-", "C110-", "A301T", "A461G", "C510A", "T679C", "A706G", "A764G", "C890T", "A995G", "A1241G", "C1253T", "G1419A", "C1444T", "C1460T", "C1490T", "T1501G", "T1520C", "A1567G", "G1568A", "T1676C", "A1839T", "C1903A", "A1988G", "T2080G", "A2191T", "C2236T", "A2392G", "T2434C", "A2464G", "T2499G", "G2656A", "G2734A", "G2887A", "G2956A", "G3094A", "G3163A", "C3541T", "T3826C", "A3855G", "G3989A", "G4057A", "C4141T", "T4147C", "T4153C", "G4183A", "T4216C", "T4435C", "G4573A", "A4751G", "G4802A", "G4888A", "A5045G", "C5050G", "T5051A", "C5085A", "A5121G", "A5122G", "G5167A", "T5206C", "A5215T", "G5257A", "C5306A", "T5484A", "T5577C", "T5578C", "T5584C", "T5616C", "A5628C", "A5656G", "G5668A", "C5688A", "G5722A", "A5730T", "A5734C", "A5868C", "G5869T", "A5914G", "G5954A", "A5965C", "T6023G", "-6165G", "-6170G", "-6171T", "-6172T", "-6175C", "C6189A", "-6204G", "-6207A", "A6209G", "-6210G", "G6220A", "A6229G", "C6241T", "A6279-", "G6314A", "A6327T", "A6330G", "G6354A", "T6373C", "T6382C", "T6393C", "T6457A", "A6535G", "G6634A", "A6654C", "C6670A", "A6684G", "C6712T", "A6713C", "A6714G", "T6721A", "A6734G", "T6735A", "G6776A", "A6797G", "G6819A", "-6830C", "-6831C", "-6832C", "A6836-", "A6837-", "T6838-", "A6886G", "A6957G", "-6977A", "C7008T", "A7026G", "A7148G", "A7151-", "A7152-", "C7153-", "A7154G", "G7155A", "C7156T", "G7160A", "A7161C", "G7162A", "T7228C", "A7239G", "G7293A", "T7321G", "G7373A", "T7386G", "G7426A", "G7441A", "C7546T", "C7576T", "G7628A", "C7631G", "G7642C", "G7689A", "A7700G", "G7709A", "A7722G", "A7734G", "G7769A", "A7782G", "C7801T", "A7818G", "T7864C", "G7868A", "T7879C", "C7898A", "C7938T", "G8001C", "T8008A", "G8021A", "A8023C", "A8030G", "G8050T", "C8080A", "T8112C", "C8155T", "T8197G", "G8245A", "A8258T", "C8291A", "G8330A", "T8369C", "C8386A", "G8490A", "T8505A", "G8561A", "T8567C", "T8594C", "A8604G", "C8687T", "G8784A", "A8882G", "C8903T", "T8914A", "T8948C", "A8950T"], "INT": ["N27S", "V72I"], "RT-p51": ["K32N", "I135R"], "RT-p66": ["K32N", "I135R"], "gp120": ["K5T", "D34N", "L57V", "-104S", "-105D", "-106V", "-107A", "N108S", "T109I", "T110N", "T112N", "-118K", "-119G", "-121I", "N150K", "V154M", "E157G", "S158L", "D159G", "S167N", "I180T", "N201K", "N267T", "K277R", "S278G", "K287R", "F289L", "D294E", "R315G", "R322K", "-326P", "N369-", "T371-", "-383S", "K391R", "N432D", "N433D", "E436-", "K462R", "R480K"], "gp41": ["V24M", "V28G", "D109N", "S133G", "A136T", "N140S", "K144R", "A156T", "N160S", "K172R", "A189T", "Q199K", "A212V", "R233T", "G240S", "T243A", "C253F", "H259Q", "I270T", "N298K", "I319L", "L330I", "A343T"], "nef": ["T15N", "K39R", "A50T", "L55M", "S88G", "V148I", "F191Y", "Y203F"], "p1": ["H9N"], "p17": ["Q59K", "N124S"], "p2": ["A7V", "N9T"], "p24": ["I11M", "V230I"], "p6": ["-26Q", "Q28V", "Q30G", "K31Q", "E32G", "-33Q"], "p7": ["I12S", "K34R"], "pro": ["K14I", "D35E", "I64V"], "rev": ["I21T", "Q51H", "S54T", "R58Q", "I59L", "T68S", "L78I", "V104L", "*117E"], "tat": ["S68P", "S70P", "L77F"], "vif": ["G101D", "A155G", "Q167K", "K179G"], "vpr": ["E6G", "L68M"], "vpu": ["L7F", "I17V", "V21I", "V39I", "K41N", "I43L", "D44A", "R47I", "M67R"]}, "labels": {"aa": "INT: N27S, V72I; RT-p51: K32N, I135R; RT-p66: K32N, I135R; gp120: K5T, D34N, L57V, -104S, -105D, -106V, -107A, N108S, T109I, T110N, T112N, -118K, -119G, -121I, N150K, V154M, E157G, S158L, D159G, S167N, I180T, N201K, N267T, K277R, S278G, K287R, F289L, D294E, R315G, R322K, -326P, N369-, T371-, -383S, K391R, N432D, N433D, E436-, K462R, R480K; gp41: V24M, V28G, D109N, S133G, A136T, N140S, K144R, A156T, N160S, K172R, A189T, Q199K, A212V, R233T, G240S, T243A, C253F, H259Q, I270T, N298K, I319L, L330I, A343T; nef: T15N, K39R, A50T, L55M, S88G, V148I, F191Y, Y203F; p1: H9N; p17: Q59K, N124S; p2: A7V, N9T; p24: I11M, V230I; p6: -26Q, Q28V, Q30G, K31Q, E32G, -33Q; p7: I12S, K34R; pro: K14I, D35E, I64V; rev: I21T, Q51H, S54T, R58Q, I59L, T68S, L78I, V104L, *117E; tat: S68P, S70P, L77F; vif: G101D, A155G, Q167K, K179G; vpr: E6G, L68M; vpu: L7F, I17V, V21I, V39I, K41N, I43L, D44A, R47I, M67R"}}}, {"name": "GQ372987", "node_attrs": {"div": 0.17592000000000002, "accession": "GQ372987", "clade_membership": {"value": "CRF47_BF1"}, "country": {"value": "ES"}, "date": {"value": 2008.0}, "Strain_name": {"value": "P1942"}, "LANL_subtype": {"value": "CRF47_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["-103G", "C417A", "A418C", "C470T", "G471C", "T534G", "A562G", "T567C", "A571T", "A576G", "G690-", "C691-", "A692-", "A758C", "C950T", "A1449G", "A1493G", "A1562G", "A1657G", "T1741C", "G1766A", "T1774A", "C1775-", "G1776-", "A1777-", "A1804G", "A1855G", "C1985A", "T2302A", "C2420T", "T2499C", "T2735C", "C2740T", "C2835A", "A2842G", "A3264G", "A3334G", "A3385G", "G3481A", "A3487G", "C3751T", "T4144C", "A4338G", "A4397C", "A4661T", "A4707C", "T4742C", "G4746A", "C4803A", "A5061G", "T5237C", "A5293G", "A5302T", "G5344A", "A5462G", "G5557A", "A5560G", "T5686C", "C5713G", "G5725T", "C5738A", "T5739C", "T5747G", "C5797A", "G5842A", "A5947G", "G6029A", "T6064C", "A6164-", "T6166-", "G6167-", "A6168-", "T6169-", "A6173-", "A6174-", "A6185G", "A6186T", "T6187C", "A6192C", "G6195A", "A6197G", "G6198C", "T6202C", "G6203A", "-6204T", "A6206-", "G6208A", "-6210T", "C6213T", "A6215G", "A6217G", "G6221A", "G6222A", "G6224T", "G6227-", "A6228-", "A6229-", "A6230-", "T6231-", "G6232-", "A6233-", "A6259C", "A6260C", "C6262A", "G6263A", "G6264C", "A6265G", "G6266A", "A6270G", "A6273G", "G6274A", "-6278A", "A6282G", "A6304C", "C6321T", "G6324A", "T6326A", "G6329A", "A6330C", "C6331T", "A6333G", "C6660T", "G6686A", "A6818G", "T6835C", "A6956G", "T6958G", "G6959A", "A6962G", "C6963A", "A6964T", "A6966C", "T6967A", "-6968A", "-6969A", "-6970T", "-6977G", "G6982A", "A6990G", "C7156A", "G7182A", "G7295C", "A7420G", "T7433C", "C7574T", "T7575A", "T7609C", "G7640A", "A7721G", "C7755A", "T7774C", "T7852A", "G7871A", "A7915G", "G7918A", "A8014G", "G8050A", "T8061G", "T8158G", "C8232T", "G8323A", "G8335A", "G8418A", "G8458A", "A8525G", "A8530G", "G8564A", "C8640T", "G8822A", "G8886A", "C8903A", "T8914C", "C8916A", "G8991A", "G9052-", "C9053-"], "INT": ["K188R", "I208L"], "RT-p51": ["I135T", "F214L", "P247Q", "K390R"], "RT-p66": ["I135T", "F214L", "P247Q", "K390R"], "gp120": ["E59K", "-104N", "T110V", "N111T", "S114A", "S116M", "E125-", "M126-", "K127-", "-141K", "-142R", "K143-", "S156L", "N160K", "T269I", "T308A", "R322G", "-328N", "-368E", "-370D", "-372N", "-373I", "-374T", "-375E", "-376E", "-377S", "-378N", "-379S", "-380S", "-381D", "S434R", "G443E", "E481Q"], "gp41": ["L91Y", "E110Q", "D113K", "N129S", "N140D", "A151E", "V190I", "C285W", "A310V"], "nef": ["V26I", "D63G", "V182M", "S187R", "F191S", "Q192K"], "p1": ["H9S"], "p17": ["Q28T", "V46L", "S67A", "K76R", "Y79F", "T81A", "A115V", "A120-"], "p2": ["N9A"], "p24": ["Q9H"], "p6": ["I21T", "-33G", "G34L", "L35Y", "Y36P", "K42R"], "pro": ["I19M", "L63I"], "rev": ["S56G", "S61N"], "tat": ["K29R", "G61S", "S62G"], "vif": ["E54K", "H73N", "T159A"], "vpr": ["Y45H", "I63M", "Q66H", "R80K"], "vpu": ["Q36E", "D40Y", "E60D", "L61Q", "S62E", "A63E", "V65S", "E66A", "G68-", "-69V", "-70E", "-71R", "-72G", "V79I"]}, "labels": {"aa": "INT: K188R, I208L; RT-p51: I135T, F214L, P247Q, K390R; RT-p66: I135T, F214L, P247Q, K390R; gp120: E59K, -104N, T110V, N111T, S114A, S116M, E125-, M126-, K127-, -141K, -142R, K143-, S156L, N160K, T269I, T308A, R322G, -328N, -368E, -370D, -372N, -373I, -374T, -375E, -376E, -377S, -378N, -379S, -380S, -381D, S434R, G443E, E481Q; gp41: L91Y, E110Q, D113K, N129S, N140D, A151E, V190I, C285W, A310V; nef: V26I, D63G, V182M, S187R, F191S, Q192K; p1: H9S; p17: Q28T, V46L, S67A, K76R, Y79F, T81A, A115V, A120-; p2: N9A; p24: Q9H; p6: I21T, -33G, G34L, L35Y, Y36P, K42R; pro: I19M, L63I; rev: S56G, S61N; tat: K29R, G61S, S62G; vif: E54K, H73N, T159A; vpr: Y45H, I63M, Q66H, R80K; vpu: Q36E, D40Y, E60D, L61Q, S62E, A63E, V65S, E66A, G68-, -69V, -70E, -71R, -72G, V79I"}}}]}]}, {"name": "NODE_0000200", "node_attrs": {"div": 0.11867000000000001, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-86T", "-87T", "-88G", "-89A", "-90G", "-91T", "-92G", "-93C", "-94T", "-95T", 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"A8597G", "A8617G", "A8643G", "G8666A", "C8684T", "G8717C", "C8727A", "G8753A", "A8801G", "G8846A", "C8883T", "A8886G", "A8917G", "A8979C", "A9005G", "T9012A"], "INT": ["V72I", "Q95R", "S119T", "V151I", "R269K"], "RT-p51": ["I5G", "V35I", "K122E", "I135L", "S162C", "V245M", "Q278H", "K366R", "A376V"], "RT-p66": ["I5G", "V35I", "K122E", "I135L", "S162C", "V245M", "Q278H", "K366R", "A376V", "H483Y", "I495V"], "gp120": ["A3K", "V33G", "D34N", "N105V", "N108I", "T110D", "N111M", "T112N", "N113S", "S114T", "S115A", "-116N", "-117G", "-118T", "-119L", "-120V", "-121G", "-122M", "-123E", "G124T", "K127T", "T135S", "M141R", "Q142H", "Y149H", "P155S", "N158E", "D159N", "N160S", "T161S", "L197I", "K212T", "R224K", "V243I", "T255I", "E262R", "E265D", "N272G", "-282A", "G284-", "L289F", "R307S", "K309E", "E311R", "N312D", "I317V", "G322R", "-326E", "N328-", "Q335K", "S347N", "F355L", "S365G", "N369-", "T371-", "-382G", "-383N", "K393R", "S412K", "I415L", "R416N", "N420K", "N432G", "N434V", "E436G", "T439N", "K462R"], "gp41": ["I4T", "Q32L", "K77R", "T101A", "S107N", "D109T", "E110Q", "T133S", "I135L", "K154Q", "K172R", "F206L", "H209L", "A212T", "E224G", "D232G", "S256C", "T268K", "V271L", "R276H", "A306T", "V322L", "H331N", "L340F"], "nef": ["A14T", "A15N", "V16I", "A26P", "R35Q", "E38G", "K39R", "A49P", "A83G", "K92R", "I101V", "Q125H", "E151D", "M168I", "M182V", "H192R"], "p17": ["E55G", "L61I", "G62E", "V82I", "K91R", "V94I"], "p2": ["S10A", "T12V", "V13-"], "p24": ["V27I", "P207Q"], "p6": ["P23-", "S24P", "-26L", "A39T", "*50L"], "p7": ["R11K", "K41R"], "pro": ["K14R", "N61D"], "rev": ["D11E", "F21A", "S30N", "P67S", "Q74L", "D86E", "C89S", "S112P"], "tat": ["K12Q", "V36K", "I39T", "P58A", "Q63K", "V67S", "L69I", "S70P", "T74S"], "vif": ["M29K", "K33R", "G37E", "V39E", "K63R", "R92K", "Q105R", "A137T"], "vpr": ["S28R", "I37V", "H40Q", "Y45F", "A55T"], "vpu": ["V15A", "I18L", "L27F", "L34V", "R37K", "-66A", "M67V", "-69V", "-70E"]}, "labels": {"aa": "INT: V72I, Q95R, S119T, V151I, R269K; RT-p51: I5G, V35I, K122E, I135L, S162C, V245M, Q278H, K366R, A376V; RT-p66: I5G, V35I, K122E, I135L, S162C, V245M, Q278H, K366R, A376V, H483Y, I495V; gp120: A3K, V33G, D34N, N105V, N108I, T110D, N111M, T112N, N113S, S114T, S115A, -116N, -117G, -118T, -119L, -120V, -121G, -122M, -123E, G124T, K127T, T135S, M141R, Q142H, Y149H, P155S, N158E, D159N, N160S, T161S, L197I, K212T, R224K, V243I, T255I, E262R, E265D, N272G, -282A, G284-, L289F, R307S, K309E, E311R, N312D, I317V, G322R, -326E, N328-, Q335K, S347N, F355L, S365G, N369-, T371-, -382G, -383N, K393R, S412K, I415L, R416N, N420K, N432G, N434V, E436G, T439N, K462R; gp41: I4T, Q32L, K77R, T101A, S107N, D109T, E110Q, T133S, I135L, K154Q, K172R, F206L, H209L, A212T, E224G, D232G, S256C, T268K, V271L, R276H, A306T, V322L, H331N, L340F; nef: A14T, A15N, V16I, A26P, R35Q, E38G, K39R, A49P, A83G, K92R, I101V, Q125H, E151D, M168I, M182V, H192R; p17: E55G, L61I, G62E, V82I, K91R, V94I; p2: S10A, T12V, V13-; p24: V27I, P207Q; p6: P23-, S24P, -26L, A39T, *50L; p7: R11K, K41R; pro: K14R, N61D; rev: D11E, F21A, S30N, P67S, Q74L, D86E, C89S, S112P; tat: K12Q, V36K, I39T, P58A, Q63K, V67S, L69I, S70P, T74S; vif: M29K, K33R, G37E, V39E, K63R, R92K, Q105R, A137T; vpr: S28R, I37V, H40Q, Y45F, A55T; vpu: V15A, I18L, L27F, L34V, R37K, -66A, M67V, -69V, -70E"}}}, {"name": "JF804812", "node_attrs": {"div": 0.19301000000000001, "accession": "JF804812", "clade_membership": {"value": "CRF28_BF1"}, "country": {"value": "BR"}, "date": {"value": 2005.0}, "Strain_name": {"value": "0679SV"}, "LANL_subtype": {"value": "CRF28_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T201A", "G215A", "C227A", "G265A", "A302T", "A303-", "G329T", "A368T", "A374G", "A399C", "A424G", "A435G", "A437T", "C456T", "C462A", "C467T", "G508A", "T534A", "C535G", "A562G", "A563G", "C590T", "G607A", "A619G", "T635C", "T641G", "G644A", "G677A", "A697G", "G717A", "T718C", "C747A", "G818A", "G869A", "T978G", "G989A", "A998G", "T1028G", "T1040C", "T1046G", "C1178T", "A1193G", "A1359T", "C1362T", "A1404G", "T1427C", "A1442T", "C1444T", "A1449G", "A1450C", "G1452A", "G1455A", "C1456A", "G1472A", "T1501A", "A1526G", "C1613T", "A1642G", "C1658G", "G1673A", "C1680A", "A1701T", "A1733G", "A1735G", "-1746C", "-1747C", "-1748T", "C1749T", "T1752C", "T1754-", "C1755-", "C1756-", "T1783G", "T1785G", "C1787T", "T1790C", "C1825A", "C1826A", "G1829A", "C1831A", "A1835G", "A1839G", "G1845A", "A1849T", "A1857G", "A1897T", "A1907G", "A1932G", "T1955C", "A1958G", "C1985A", "T1986C", "C2005T", "C2010T", "T2013C", "A2014C", "G2023A", "T2024G", "A2038G", "T2043C", "T2066A", "A2075C", "A2154G", "G2156A", "T2199A", "A2210G", "A2216C", "G2224A", "T2245C", "A2317G", "A2332G", "G2358T", "G2359T", "C2420T", "A2461G", "T2499C", "A2519G", "G2548A", "C2589T", "A2645G", "A2665G", "A2692G", "A2693G", "G2702A", "A2707G", "T2724G", "G2727A", "A2738T", "C2739A", "A2743C", "T2778A", "C2845T", "G2872A", "G2878A", "C2909T", "G2914A", "A2920G", "A2951G", "G2957T", "G2972A", "A3010G", "C3075T", "G3088A", "G3094A", "C3100A", "A3103G", "A3116G", "C3174T", "T3181A", "A3264G", "A3292C", "T3303C", "G3340A", "C3449A", "A3451G", "A3521C", "T3544G", "A3562G", "T3567C", "C3613T", "T3628C", "C3649A", "G3664A", "G3667A", "A3682C", "G3685A", "A3733G", "A3787C", "T3793G", "G3805T", "G3825A", "C3843T", "G3891A", "T3967C", "G3989A", "T4039C", "A4076C", "A4130C", "C4140T", "C4146A", "A4148G", "G4150A", "G4183A", "T4234C", "G4243A", "G4252A", "A4255G", "G4303C", "A4306G", "G4351A", "T4412C", "A4474T", "A4498G", "C4501T", "A4546T", "G4582A", "T4656C", "C4667T", "A4671G", "G4673A", "A4693C", "A4717T", "C4728A", "A4737G", "G4779A", "T4786A", "G4829A", "C4833A", "A4834G", "G4835T", "A4857G", "A4877G", "A4878G", "C4883T", "A4892G", "A4901T", "A4968G", "G4986A", "G5009A", "C5050A", "A5051G", "T5084C", "G5087A", "G5131A", "A5154C", "G5167A", "A5200G", "C5221T", "T5228C", "T5237C", "C5268T", "A5282T", "T5292C", "A5336C", "G5359C", "G5370A", "A5375G", "C5444A", "C5495A", "A5545G", "C5567A", "A5612T", "T5614C", "C5620G", "A5621T", "A5628T", "G5668A", "C5679T", "G5685A", "T5686G", "G5700A", "G5737A", "A5743T", "G5747T", "A5796G", "-5805C", "A5840T", "G5861A", "G5864C", "A5866G", "C5884A", "G5893A", "C5958A", "G5972A", "A6008G", "G6016A", "A6030G", "G6037A", "A6053G", "A6065G", "G6086A", "T6109G", "G6121A", "T6170G", "T6175C", "A6180G", "T6181C", "T6187A", "A6194G", "G6198C", "G6201A", "-6203A", "-6204G", "-6205G", "-6207T", "-6211A", "-6212A", "-6213T", "-6214A", "-6216T", "-6217T", "G6218T", "-6219G", "T6264A", "G6266A", "G6269A", "C6278A", "G6314A", "T6315A", "C6318A", "T6321C", "T6325A", "C6345T", "T6351C", "A6354G", "T6372G", "G6379T", "C6387A", "A6420T", "G6458A", "A6465C", "C6477A", "C6496T", "T6511C", "G6525A", "G6577C", "C6601T", "G6604A", "A6622T", "A6628G", "C6666T", "C6667A", "A6668G", "C6670T", "A6679C", "A6682G", "A6695C", "C6707T", "C6708G", "G6716A", "T6721G", "T6745C", "A6746C", "T6747C", "A6781T", "C6790A", "A6798G", "A6801G", "C6810T", "G6819A", "A6820T", "G6821A", "T6828A", "T6829C", "T6835C", "T6838C", "A6840G", "G6848T", "C6849T", "A6858G", "A6932T", "C6938T", "A6959T", "A6963C", "C6964T", "C6966A", "T6967G", "T6968A", "G6969T", "G6970C", "-6971T", "-6973C", "-6974A", "-6977G", "-6978A", "A6987C", "T6991G", "-6995G", "-6996A", "-6997G", "-7002A", "-7005G", "-7006T", "A7037T", "A7095T", "T7114C", "G7126A", "C7127T", "T7130A", "C7153T", "A7154G", "A7158G", "T7159C", "G7160C", "G7162T", "A7163C", "A7183G", "A7373T", "G7390A", "A7428G", "A7504G", "T7516C", "G7517A", "A7620G", "A7633T", "T7642C", "A7666G", "A7669G", "C7702T", "A7711G", "A7747C", "T7762A", "A7763T", "A7764C", "G7765A", "T7775C", "G7790A", "C7874T", "G7885A", "T7894C", "C7939T", "A7941C", "C7954A", "A7995G", "A8011C", "C8051A", "C8065T", "C8146A", "C8149G", "G8170A", "G8181T", "C8213T", "G8219T", "C8220G", "C8221T", "C8223T", "A8228G", "G8264A", "T8268C", "A8276G", "T8277C", "G8280T", "T8290C", "A8297G", "A8303G", "G8304T", "A8306C", "T8348A", "C8364T", "A8367G", "A8370C", "G8436C", "T8440C", "G8453A", "A8458G", "A8468G", "T8483C", "G8528A", "G8540T", "C8546T", "G8554A", "A8555G", "A8564G", "A8588G", "T8595G", "C8646T", "A8653C", "G8654A", "C8727A", "G8802A", "A8823G", "T8835C", "A8844C", "G8846A", "A8847G", "G8848C", "A8912G", "T8915C", "A8971C", "A9009G"], "INT": ["D6E", "E10D", "S17N", "A23V", "S39N", "V72I", "I101L", "S119P", "T122I", "T124N", "T125A", "E256D"], "RT-p51": ["K20R", "V21I", "V35E", "T39A", "M41L", "W88F", "I135T", "I142V", "T165I", "M184V", "T200A", "E203K", "L210W", "R211K", "T215Y", "L228H", "P272S", "T286A", "A288S", "V293I", "A327V", "I341V", "A360V", "K390R", "E399D", "I403T"], "RT-p66": ["K20R", "V21I", "V35E", "T39A", "M41L", "W88F", "I135T", "I142V", "T165I", "M184V", "T200A", "E203K", "L210W", "R211K", "T215Y", "L228H", "P272S", "T286A", "A288S", "V293I", "A327V", "I341V", "A360V", "K390R", "E399D", "I403T", "L452K", "K476Q", "H483Q", "L491S", "E529D"], "gp120": ["A3T", "E4Q", "T35K", "V40I", "N52D", "E59G", "M67V", "N71D", "E78K", "D85E", "N105D", "L106V", "R109G", "T112S", "I137K", "G138R", "D139N", "Q142N", "V154K", "P155Q", "I156T", "N157E", "T164I", "I166T", "N167S", "I173S", "Q175H", "P178Q", "Y189F", "D202N", "K204T", "T208K", "R224K", "E241D", "P271L", "N272D", "I281L", "P285W", "A288T", "I298P", "T308A", "K309N", "N312K", "K315R", "Q316R", "G322N", "E323K", "F325Y", "K329R", "A332F", "Q335R", "T360S", "-370D", "-372K", "-373T", "-374E", "-375N", "-376G", "D384-", "I395F", "S412R", "Q414L", "L426I", "N433-", "N434-", "T437S"], "gp41": ["V24L", "N42S", "V72I", "K106R", "S107T", "D109K", "E110D", "E148D", "D153E", "K154S", "D163N", "L191F", "Q213P", "D217E", "K231R", "S293I", "L304F", "A306C", "T307I", "I309V", "V321I", "V322A", "I325A", "C326F", "I332V", "R334V"], "nef": ["R8C", "S9G", "M10L", "D28E", "G29R", "A32P", "K39R", "R71K", "L85V", "H102Y", "Q104P", "E151D", "E154K", "N161D", "M168L", "S169A"], "p1": ["K4R", "H9Q"], "p17": ["K30R", "I34V", "R58K", "K76R", "K95R", "D102E", "D121G", "V128T"], "p2": ["A7V", "N9-", "S10-", "V13N"], "p24": ["L83V", "T210S", "S225G"], "p6": ["L1I", "T8S", "E19G", "T21I", "-26Q", "Q28D", "Q30G", "K31R", "D32E", "E33G", "G34L", "L35Y", "Y36P", "P49Q", "S51*"], "p7": ["S4G", "I12N"], "pro": ["L10I", "V11I", "I13V", "K14R", "G16E", "K20R", "L33F", "N37D", "K45R", "F53L", "I54V", "L63T", "A71V", "I72T", "L76V", "V82A", "L90M", "I93L"], "rev": ["L18I", "P31S", "Q36K", "I55L", "A68E", "L73F", "P100T", "Q101E", "A108T", "E111D"], "tat": ["T40K", "R57G", "T64N", "P77L", "T82K"], "vif": ["M29V", "K36T", "Y44F", "I51V", "V65I", "I67K", "Q83S", "K91E", "I98V", "Q105H", "I128V", "D134N", "T155K", "G182D", "N190H"], "vpr": ["E17A", "Y45H", "A55V", "I60L", "I63T", "R85P", "A89T"], "vpu": ["Q2L", "S3P", "Q5V", "L7F", "V21I", "L27V", "D44N", "I46L", "R47I", "D60E", "Q61L", "E62S", "E63A", "L65V", "-66D", "-68G", "M71-", "G72-", "D78V"]}, "labels": {"aa": "INT: D6E, E10D, S17N, A23V, S39N, V72I, I101L, S119P, T122I, T124N, T125A, E256D; RT-p51: K20R, V21I, V35E, T39A, M41L, W88F, I135T, I142V, T165I, M184V, T200A, E203K, L210W, R211K, T215Y, L228H, P272S, T286A, A288S, V293I, A327V, I341V, A360V, K390R, E399D, I403T; RT-p66: K20R, V21I, V35E, T39A, M41L, W88F, I135T, I142V, T165I, M184V, T200A, E203K, L210W, R211K, T215Y, L228H, P272S, T286A, A288S, V293I, A327V, I341V, A360V, K390R, E399D, I403T, L452K, K476Q, H483Q, L491S, E529D; gp120: A3T, E4Q, T35K, V40I, N52D, E59G, M67V, N71D, E78K, D85E, N105D, L106V, R109G, T112S, I137K, G138R, D139N, Q142N, V154K, P155Q, I156T, N157E, T164I, I166T, N167S, I173S, Q175H, P178Q, Y189F, D202N, K204T, T208K, R224K, E241D, P271L, N272D, I281L, P285W, A288T, I298P, T308A, K309N, N312K, K315R, Q316R, G322N, E323K, F325Y, K329R, A332F, Q335R, T360S, -370D, -372K, -373T, -374E, -375N, -376G, D384-, I395F, S412R, Q414L, L426I, N433-, N434-, T437S; gp41: V24L, N42S, V72I, K106R, S107T, D109K, E110D, E148D, D153E, K154S, D163N, L191F, Q213P, D217E, K231R, S293I, L304F, A306C, T307I, I309V, V321I, V322A, I325A, C326F, I332V, R334V; nef: R8C, S9G, M10L, D28E, G29R, A32P, K39R, R71K, L85V, H102Y, Q104P, E151D, E154K, N161D, M168L, S169A; p1: K4R, H9Q; p17: K30R, I34V, R58K, K76R, K95R, D102E, D121G, V128T; p2: A7V, N9-, S10-, V13N; p24: L83V, T210S, S225G; p6: L1I, T8S, E19G, T21I, -26Q, Q28D, Q30G, K31R, D32E, E33G, G34L, L35Y, Y36P, P49Q, S51*; p7: S4G, I12N; pro: L10I, V11I, I13V, K14R, G16E, K20R, L33F, N37D, K45R, F53L, I54V, L63T, A71V, I72T, L76V, V82A, L90M, I93L; rev: L18I, P31S, Q36K, I55L, A68E, L73F, P100T, Q101E, A108T, E111D; tat: T40K, R57G, T64N, P77L, T82K; vif: M29V, K36T, Y44F, I51V, V65I, I67K, Q83S, K91E, I98V, Q105H, I128V, D134N, T155K, G182D, N190H; vpr: E17A, Y45H, A55V, I60L, I63T, R85P, A89T; vpu: Q2L, S3P, Q5V, L7F, V21I, L27V, D44N, I46L, R47I, D60E, Q61L, E62S, E63A, L65V, -66D, -68G, M71-, G72-, D78V"}}}]}, {"name": "CRF28_BF1_NODE_0000002", "node_attrs": {"div": 0.15125, "clade_membership": {"value": "CRF28_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A2699G", "G2714C", "G2725A", "A2842G", "A3571G", "G3766A", "C4131G", "T5356C", "G5412A", "A5433G", "T5448A", "G5856A", "T6171G", "G6218A", "G6547A", "A6686-", "G6687-", "A6693G", "A6818G", "G6859C", "A7149C", "C7153A", "A7161T", "A7962G", "A7996C", "G8537A", "G8739A", "C8795A", "A8796C", "G8875A", "G8954A"], "RT-p51": ["D123E", "I202V", "E207Q"], "RT-p66": ["D123E", "I202V", "E207Q", "L452Q"], "gp120": ["S1N", "D294E", "N432-"], "gp41": ["V24M", "E220G"], "nef": ["V133I", "E155K", "R178K"], "rev": ["A68T"], "tat": ["K85E"], "vif": ["I154V"], "vpr": ["I84T"]}, "labels": {"aa": "RT-p51: D123E, I202V, E207Q; RT-p66: D123E, I202V, E207Q, L452Q; gp120: S1N, D294E, N432-; gp41: V24M, E220G; nef: V133I, E155K, R178K; rev: A68T; tat: K85E; vif: I154V; vpr: I84T"}}, "children": [{"name": "JF804809", "node_attrs": {"div": 0.19302, "accession": "JF804809", "clade_membership": {"value": "CRF28_BF1"}, "country": {"value": "BR"}, "date": {"value": 2005.0}, "Strain_name": {"value": "0614SV"}, "LANL_subtype": {"value": "CRF28_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "A368T", "A428G", "G480A", "C510A", "C516A", "G608A", "C623T", "T636C", "A699G", "G709A", "G712A", "A725G", "C747G", "G771C", "C773T", "C774A", "T861G", "T897C", "A923T", "C950T", "G989A", "C1013T", "A1205G", "T1223C", "T1280G", "G1301A", "G1302A", "G1313A", "C1316T", "G1346A", "A1418G", "C1439T", "A1450G", "T1457A", "-1458A", "-1459G", "-1460T", "G1461A", "A1464C", "G1476A", "T1501C", "G1503A", "T1505C", "C1541A", "A1588G", "A1601G", "C1656A", "A1657G", "G1664A", "C1688G", "G1709A", "C1724T", "A1740G", "A1793G", "G1794A", "C1826T", "T1978G", "A1979G", "A2038G", "T2062C", "T2083C", "C2149A", "G2173A", "A2182G", "G2224A", "A2293G", "C2386A", "C2420T", "G2422A", "A2437T", "G2470A", "T2476C", "T2499C", "G2518A", "T2607A", "C2626A", "C2635T", "C2644T", "C2671T", "G2682A", "A2725C", "C2845T", "G2887A", "G2914A", "A2938G", "G2972A", "A3043G", "C3100T", "A3109T", "T3121C", "G3166A", "G3169A", "G3188A", "A3230G", "G3250A", "A3280G", "A3292G", "A3293G", "A3302G", "A3304G", "G3364A", "C3376T", "T3414A", "T3433G", "T3436C", "A3454C", "T3493A", "C3497A", "C3499T", "C3542T", "G3564A", "A3735G", "G3755A", "C3763T", "G3814A", "C3823T", "A3835G", "T3844C", "G3891A", "A3973C", "G4051A", "T4075C", "A4076C", "C4110T", "A4112G", "T4117C", "G4150A", "T4153A", "C4195A", "T4234C", "G4294A", "C4321T", "T4412C", "A4474T", "A4498G", "C4543A", "G4636A", "A4664G", "T4706C", "C4726T", "T4786A", "G4816A", "C4820A", "T4832C", "G4835T", "C4841T", "G4856A", "G4966A", "T4988A", "A5046G", "T5062C", "G5086A", "G5093A", "T5125C", "A5128G", "A5179G", "G5185A", "T5188A", "T5224G", "G5225A", "G5257A", "G5267A", "C5281T", "A5290G", "A5355T", "A5360G", "G5386A", "C5415T", "A5453T", "T5487C", "C5539A", "A5560G", "C5567A", "T5614C", "C5620G", "A5621T", "G5668A", "C5679T", "T5686C", "G5700A", "A5704T", "G5725A", "A5734C", "T5739C", "A5751T", "A5787G", "C5792T", "A5793G", "T5801G", "-5805G", "T5826C", "A5866T", "C5884T", "C5923T", "A5926C", "C5956A", "C6010A", "G6016A", "A6019G", "A6030T", "A6079G", "G6121A", "T6151C", "G6179T", "A6185T", "A6186G", "T6187G", "A6188G", "C6189T", "A6191C", "A6192G", "G6195A", "A6206-", "A6208-", "A6209T", "-6211A", "-6212A", "-6213A", "-6214A", "-6216T", "-6217T", "-6219G", "A6257G", "A6260G", "G6266A", "G6269A", "C6278T", "T6299C", "C6318A", "T6321C", "T6325G", "G6329A", "A6333C", "T6334C", "G6401C", "A6425G", "C6443A", "A6448T", "T6562C", "C6612T", "A6616G", "T6637C", "G6647C", "A6648T", "A6659T", "-6686G", "-6687C", "G6709A", "G6716A", "T6719A", "A6728G", "G6731A", "T6735A", "C6767A", "A6773G", "G6776A", "C6777A", "A6788G", "A6799G", "G6802A", "A6803G", "T6815C", "G6821A", "T6828-", "T6829-", "A6833-", "T6838C", "A6842T", "A6845G", "G6894C", "C6935A", "-6971A", "-6973T", "-6974A", "T6976A", "-6977C", "-6978A", "-6980G", "-6981G", "-6982G", "A6990G", "-7002A", "-7005A", "-7006T", "C7014T", "C7024T", "G7048A", "C7087T", "A7090C", "A7096G", "G7101A", "A7102T", "T7106A", "G7123A", "A7148C", "T7150A", "A7151G", "A7157T", "A7158C", "T7159C", "G7160T", "T7161C", "G7162A", "C7165T", "G7182C", "G7190A", "G7195A", "A7239G", "A7269G", "A7299G", "A7306G", "A7322C", "A7366C", "A7373T", "G7391A", "A7396G", "A7426G", "T7433C", "A7525T", "A7533G", "A7604G", "C7625T", "T7626A", "G7627C", "A7629G", "A7666C", "G7676A", "C7690A", "A7756G", "G7765A", "G7777A", "G7847A", "A7873G", "A7912C", "T7932A", "G7937A", "G7942A", "C7959A", "A7998G", "C8005G", "A8011C", "G8050A", "G8085C", "C8095A", "C8106A", "G8110A", "T8159G", "T8218C", "G8219T", "C8220T", "C8223T", "G8245A", "G8255A", "T8265C", "G8274C", "T8279G", "C8291A", "C8294A", "G8317A", "G8365A", "T8366G", "G8368-", "T8369-", "A8370-", "G8373A", "T8375G", "C8386A", "T8387G", "A8409G", "A8425T", "G8446A", "A8455C", "C8460T", "A8469G", "C8480A", "G8502A", "A8503G", "C8523A", "A8524T", "A8525G", "G8528A", "G8534A", "C8546T", "A8584T", "A8586C", "G8598A", "T8600A", "T8708A", "A8801G", "G8805A", "C8904A", "G8905A", "C8916G", "T8918G", "G8922A", "T8923A", "T8966G", "G8968A", "C9017T"], "INT": ["S39N", "I101L", "T112I", "I113V"], "RT-p51": ["I135T", "F171Y", "D177E", "G196E", "L210F", "V293I", "V365I", "S379G", "T400A", "I403V", "F440Y"], "RT-p66": ["I135T", "F171Y", "D177E", "G196E", "L210F", "V293I", "V365I", "S379G", "T400A", "I403V", "F440Y", "P468T", "H483Y", "G490E", "Q547R", "A554T"], "gp120": ["E4D", "D34E", "N52K", "E59V", "N105D", "N107K", "N108I", "T110E", "N111-", "T112-", "N113-", "S114-", "S115-", "T135A", "S136G", "G138R", "D139N", "Q142Y", "Y149H", "P155Q", "I156T", "N157E", "D159N", "N160T", "E183Q", "L197I", "A253V", "E265L", "T269S", "S278A", "H280R", "A288T", "L289I", "T292A", "G293R", "E294K", "L305I", "R307G", "T308K", "N312D", "I317V", "E323K", "F325Y", "N327-", "T330S", "I331V", "Q335H", "S347T", "Q361K", "-370S", "-372N", "T387I", "R416N", "S418T", "-432P", "N433E", "N435S", "E436S", "G443A", "D446N", "M447I", "K462R", "K472R", "K482R"], "gp41": ["M7L", "M24L", "A30T", "R74S", "K77R", "T101A", "L108Y", "D109S", "E121D", "D125N", "V182I", "L210H", "A212T", "P219H", "K231N", "D232G", "R261T", "T268K", "W286G", "A306F", "T307I", "V318I", "V321A", "R324T", "C326G", "L330I", "H331N"], "nef": ["R8Q", "S9M", "M10R", "G11-", "A15E", "T23A", "D28V", "R35Q", "E38A", "H40Y", "I43V", "S46R", "D54S", "Q61M", "Y81F", "K82Q", "D86K", "K129Q", "R188N", "H192E", "V194K"], "p1": ["H9S"], "p17": ["G49S", "Q59K", "L61I", "K91R", "T122A", "S125N", "S126N"], "p2": ["N9S", "T12S", "V13I", "M14L"], "p24": ["I6V", "A14P", "L15I", "S44A", "V191I"], "p6": ["N3K", "T21V", "A39T"], "p7": ["I12T", "V13I", "K41R"], "pro": ["D60E", "N61D"], "rev": ["S8R", "L18I", "S30N", "E32K", "H53D", "I55L", "E79D", "L83I", "D86E", "G88S", "V104G"], "tat": ["V4I", "Y26F", "S62G", "T64N", "S75T", "R78K", "P84T"], "vif": ["R17K", "T47I", "I67K", "R77K", "D78E", "Q83H", "R127H", "D134E", "I159T", "R167K", "I180T", "K181R"], "vpr": ["S28R", "H40Q", "G41S", "A55T", "T84D", "S94N"], "vpu": ["S3P", "Q5V", "V21I", "I33L", "D40N", "I43L", "E48D", "-66A", "M67L", "-68G", "-70E"]}, "labels": {"aa": "INT: S39N, I101L, T112I, I113V; RT-p51: I135T, F171Y, D177E, G196E, L210F, V293I, V365I, S379G, T400A, I403V, F440Y; RT-p66: I135T, F171Y, D177E, G196E, L210F, V293I, V365I, S379G, T400A, I403V, F440Y, P468T, H483Y, G490E, Q547R, A554T; gp120: E4D, D34E, N52K, E59V, N105D, N107K, N108I, T110E, N111-, T112-, N113-, S114-, S115-, T135A, S136G, G138R, D139N, Q142Y, Y149H, P155Q, I156T, N157E, D159N, N160T, E183Q, L197I, A253V, E265L, T269S, S278A, H280R, A288T, L289I, T292A, G293R, E294K, L305I, R307G, T308K, N312D, I317V, E323K, F325Y, N327-, T330S, I331V, Q335H, S347T, Q361K, -370S, -372N, T387I, R416N, S418T, -432P, N433E, N435S, E436S, G443A, D446N, M447I, K462R, K472R, K482R; gp41: M7L, M24L, A30T, R74S, K77R, T101A, L108Y, D109S, E121D, D125N, V182I, L210H, A212T, P219H, K231N, D232G, R261T, T268K, W286G, A306F, T307I, V318I, V321A, R324T, C326G, L330I, H331N; nef: R8Q, S9M, M10R, G11-, A15E, T23A, D28V, R35Q, E38A, H40Y, I43V, S46R, D54S, Q61M, Y81F, K82Q, D86K, K129Q, R188N, H192E, V194K; p1: H9S; p17: G49S, Q59K, L61I, K91R, T122A, S125N, S126N; p2: N9S, T12S, V13I, M14L; p24: I6V, A14P, L15I, S44A, V191I; p6: N3K, T21V, A39T; p7: I12T, V13I, K41R; pro: D60E, N61D; rev: S8R, L18I, S30N, E32K, H53D, I55L, E79D, L83I, D86E, G88S, V104G; tat: V4I, Y26F, S62G, T64N, S75T, R78K, P84T; vif: R17K, T47I, I67K, R77K, D78E, Q83H, R127H, D134E, I159T, R167K, I180T, K181R; vpr: S28R, H40Q, G41S, A55T, T84D, S94N; vpu: S3P, Q5V, V21I, I33L, D40N, I43L, E48D, -66A, M67L, -68G, -70E"}}}, {"name": "CRF28_BF1_NODE_0000003", "node_attrs": {"div": 0.15761999999999998, "clade_membership": {"value": "CRF28_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A424G", "G607A", "T614G", "G706A", "C1060A", "G1277A", "A1670C", "G1725A", "T1741C", "A1993C", "T2013C", "G2026A", "A2332G", "T2581C", "T3181A", "A3268G", "T3541C", "G3631A", "A3769G", "G3770A", "G3836T", "C4146A", "G4226A", "A4684G", "A4694G", "G4695A", "G4696A", "T5237C", "T5305G", "A5432G", "G5599T", "A5784G", "A5790G", "T5791G", "C5792A", "T5871C", "A5947C", "G6167A", "T6175G", "A6180C", "-6207G", "T6280G", "T6361C", "G6379A", "A6489C", "T6688-", "A6689-", "T6690-", "A6691-", "-6697A", "-6698C", "-6699A", "-6700T", "-6701C", "-6702T", "C6807T", "-6830A", "-6832A", "A6886G", "-6995G", "T7003-", "C7008A", "G7390A", "G7471A", "A7628G", "T7715G", "A7764C", "T7796A", "A7929G", "C8044A", "G8264A", "T8531G", "C8590G", "T8687C", "T8829A"], "INT": ["A21S", "T124N", "V151I", "E256D"], "RT-p66": ["V559I"], "gp120": ["L6S", "K31N", "R109A", "K212T", "A318V", "N368K", "-372W", "-378N", "T385N"], "gp41": ["S138A", "K154T", "S165T", "H209R", "D247E", "V321I"], "nef": ["D63E", "A83G", "C163S"], "p17": ["K30R", "D93E", "S124N"], "p24": ["I6L", "T110N"], "p6": ["G16R"], "pro": ["E65D", "I72T"], "tat": ["K19R", "T74A"], "vif": ["K33R"], "vpr": ["Y45H"]}, "labels": {"aa": "INT: A21S, T124N, V151I, E256D; RT-p66: V559I; gp120: L6S, K31N, R109A, K212T, A318V, N368K, -372W, -378N, T385N; gp41: S138A, K154T, S165T, H209R, D247E, V321I; nef: D63E, A83G, C163S; p17: K30R, D93E, S124N; p24: I6L, T110N; p6: G16R; pro: E65D, I72T; tat: K19R, T74A; vif: K33R; vpr: Y45H"}}, "children": [{"name": "DQ085874", "node_attrs": {"div": 0.18692999999999999, "accession": "DQ085874", "clade_membership": {"value": "CRF28_BF1"}, "country": {"value": "BR"}, "date": {"value": 1999.0}, "Strain_name": {"value": "BREPM12817"}, "LANL_subtype": {"value": "CRF28_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T201-", "C227A", "C258T", "A303T", "A435G", "A485T", "A491G", "A518G", "G520A", "C540A", "C623T", "G629A", "A697G", "G712A", "T718C", "C749T", "G770A", "G771C", "C823G", "G829A", "C875T", "T1052A", "A1147C", "A1150C", "A1152C", "A1158G", "A1208C", "C1210T", "C1211T", "A1230C", "G1251C", "C1252T", "C1304T", "A1306C", "A1319C", "A1332T", "A1343T", "A1349C", "G1356C", "A1359T", "A1364T", "A1371C", "T1375C", "A1379C", "G1380C", "A1382T", "T1383G", "A1387C", "G1443A", "A1450G", "G1476A", "A1589G", "C1598T", "A1642G", "G1664A", "A1687G", "A1701T", "G1709A", "C1714A", "C1730T", "A1733G", "C1745A", "-1746A", "-1747C", "-1748T", "T1752C", "C1756A", "A1768C", "A1771T", "G1776A", "G1780A", "C1787T", "A1793G", "C1825A", "C1826A", "A1835G", "G1845A", "T1854C", "C1985T", "T1986C", "G2023A", "A2032G", "A2063C", "T2080C", "T2095C", "G2198A", "C2206T", "G2230A", "T2263C", "A2293G", "G2343A", "A2461G", "G2682A", "T2770C", "G2872A", "G2878A", "A2925G", "A2938G", "A2968G", "G3098T", "T3197C", "G3205A", "A3283G", "C3449A", "A3502G", "A3505G", "T3530C", "C3545T", "A3562G", "T3566G", "A3592C", "C3649T", "G3685A", "C3692T", "T4024C", "C4140T", "T4147C", "G4294A", "C4321T", "G4366A", "T4412C", "A4498G", "A4671G", "A4677G", "A4693G", "A4697T", "A5046G", "A5121C", "G5187A", "G5212A", "A5213C", "T5214C", "T5319A", "G5335A", "T5439C", "T5454C", "C5548A", "C5559T", "G5589A", "A5613C", "T5688A", "A5712G", "A5720G", "T5739G", "T5778C", "A5787C", "T5788C", "T5789A", "C5795A", "C5797T", "T5799A", "G5800C", "G5803-", "A5804-", "A5806-", "T5807-", "G5808-", "G5809-", "G5810-", "G5811-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5915T", "C5924T", "A5946G", "C5964T", "G6020A", "A6076T", "G6088A", "G6112A", "A6185G", "T6202A", "-6203G", "-6204G", "-6205A", "T6210A", "-6211T", "A6215-", "A6218-", "G6221A", "G6225A", "A6257T", "G6269A", "G6323A", "A6333G", "G6430A", "C6499T", "G6525A", "G6577A", "A6583G", "A6602T", "A6654C", "A6659G", "C6660A", "C6692G", "C6707T", "C6708T", "G6709T", "T6721G", "A6734G", "T6735A", "C6758T", "G6771A", "G6776A", "A6801G", "-6831A", "G6848A", "T6853C", "A6854G", "A6858T", "G6884A", "A6887C", "T6898C", "A6900G", "T6916C", "T6942A", "C6951A", "T6953A", "A6962G", "A6963G", "-6971A", "-6973T", "-6974A", "-6977A", "-6978A", "-6980G", "-6981G", "-6982G", "-6983A", "-6984G", "-6985T", "A6990C", "C6993A", "-6996A", "-6997T", "A7001-", "G7004-", "G7089C", "C7094G", "A7095C", "C7107T", "C7127T", "T7147A", "T7150G", "A7152G", "A7154G", "A7155C", "C7156G", "G7160C", "A7163T", "A7441G", "G7459A", "G7627A", "G7640A", "T7642C", "T7691G", "C7701A", "C7702T", "G7790A", "C7801A", "A7819G", "T7876C", "C7996G", "T8008A", "C8009A", "G8050A", "G8158C", "A8193G", "G8245A", "G8255A", "G8274T", "A8306C", "G8329A", "T8337A", "C8364T", "T8369C", "A8378G", "G8382A", "C8646T", "C8688A", "C8699A", "C8727A", "T8759C", "A8780G", "G8805A", "C8883T", "A8917G", "T8918C", "G8924A", "C8928A", "A8971T", "A8980T", "G8991A"], "INT": ["T122I"], "RT-p51": ["V35I", "R83K", "G196E", "K277R", "G335C"], "RT-p66": ["V35I", "R83K", "G196E", "K277R", "G335C", "Q452K", "L491V"], "gp120": ["T21S", "N31S", "A37V", "V56I", "E74D", "L106W", "N111D", "-116R", "-123K", "G124E", "T135S", "D139N", "N160S", "A191T", "R224K", "T250S", "N267T", "T269E", "S278G", "I281L", "P285F", "H302Y", "S306N", "Q316R", "-326K", "A332T", "N334D", "Q335L", "V344M", "M345L", "N349S", "F363Y", "T366N", "W367R", "-370G", "-373N", "-374N", "-375N", "-376G", "-377S", "-379T", "-380N", "S412T", "Q414A", "S418L", "-432T", "N433R", "N434A", "E436L", "T437S"], "gp41": ["D113N", "L130V", "T133N", "D163N", "N166K", "W285C", "K297R", "V318I", "R324I", "L345Q"], "nef": ["R8C", "A14T", "H102Y", "H116N", "H192R"], "p1": ["K4R"], "p17": ["I34V", "G62E", "Q69K", "D121G", "S126N", "V128A"], "p2": ["A7T", "N9-", "T12A"], "p24": ["A14P", "A31G", "S33N", "N139T", "K140T", "I141L", "R143G", "E159D", "P160L", "A174L", "Q192P", "I201F", "A209P", "T210S", "M214L", "M215T", "A217P", "C218G", "Q219P"], "p6": ["N3S", "T8S", "A12E", "P23T", "S24P", "-26Q", "Q30P", "K31I", "E33K", "G34E", "P49Q"], "pro": ["L10I", "I13V", "G16E", "L19P", "L63S", "M89L"], "rev": ["D11E", "T15I", "S25N", "R50G", "S54K", "V104L"], "tat": ["P58T"], "vif": ["M29V", "I31V", "K36R", "G37N", "K179Q"], "vpr": ["E6A", "S28N", "I37P", "F72Y", "R77Q"], "vpu": ["Q2H", "K38R", "D44E", "M67-", "-69V", "-70E"]}, "labels": {"aa": "INT: T122I; RT-p51: V35I, R83K, G196E, K277R, G335C; RT-p66: V35I, R83K, G196E, K277R, G335C, Q452K, L491V; gp120: T21S, N31S, A37V, V56I, E74D, L106W, N111D, -116R, -123K, G124E, T135S, D139N, N160S, A191T, R224K, T250S, N267T, T269E, S278G, I281L, P285F, H302Y, S306N, Q316R, -326K, A332T, N334D, Q335L, V344M, M345L, N349S, F363Y, T366N, W367R, -370G, -373N, -374N, -375N, -376G, -377S, -379T, -380N, S412T, Q414A, S418L, -432T, N433R, N434A, E436L, T437S; gp41: D113N, L130V, T133N, D163N, N166K, W285C, K297R, V318I, R324I, L345Q; nef: R8C, A14T, H102Y, H116N, H192R; p1: K4R; p17: I34V, G62E, Q69K, D121G, S126N, V128A; p2: A7T, N9-, T12A; p24: A14P, A31G, S33N, N139T, K140T, I141L, R143G, E159D, P160L, A174L, Q192P, I201F, A209P, T210S, M214L, M215T, A217P, C218G, Q219P; p6: N3S, T8S, A12E, P23T, S24P, -26Q, Q30P, K31I, E33K, G34E, P49Q; pro: L10I, I13V, G16E, L19P, L63S, M89L; rev: D11E, T15I, S25N, R50G, S54K, V104L; tat: P58T; vif: M29V, I31V, K36R, G37N, K179Q; vpr: E6A, S28N, I37P, F72Y, R77Q; vpu: Q2H, K38R, D44E, M67-, -69V, -70E"}}}, {"name": "DQ085873", "node_attrs": {"div": 0.18996, "accession": "DQ085873", "clade_membership": {"value": "CRF28_BF1"}, "country": {"value": "BR"}, "date": {"value": 1999.0}, "Strain_name": {"value": "BREPM12609"}, "LANL_subtype": {"value": "CRF28_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A177C", "A368T", "A374G", "A464T", "A485C", "C516A", "A530G", "T539A", "A562G", "T571A", "T572C", "T602C", "G615A", "T641C", "A653G", "A699G", "G716A", "A776G", "G810A", "A836G", "T858C", "G869A", "T897C", "T902C", "G989A", "C1013T", "T1052C", "C1077G", "A1078C", "A1160G", "A1192G", "C1229T", "G1452A", "G1455A", "A1474G", "G1498A", "A1543G", "A1588G", "C1610T", "G1673A", "C1775G", "T1796C", "A1841G", "A1857G", "A1979G", "T2062C", "A2407G", "A2592G", "A2726G", "G2727A", "A2734G", "A2825G", "G2847T", "C2848T", "C2863T", "G2887A", "T2908C", "A2956G", "G3019A", "C3075T", "G3099A", "A3115G", "A3151C", "G3154A", "A3218G", "A3247C", "A3264C", "C3499T", "C3500T", "A3619C", "A3715G", "T3779C", "G3805T", "C3843A", "G3859A", "G3989A", "A4076C", "A4105G", "A4112G", "C4123T", "A4148G", "G4176A", "T4234C", "G4279A", "G4303A", "A4333G", "G4354A", "G4376A", "G4388T", "A4407G", "T4435C", "T4471C", "C4475G", "A4525C", "G4573A", "T4703G", "A4737G", "A4860G", "G4861A", "A4878G", "C4910T", "T4922C", "A4949G", "G4995A", "T5047C", "C5050A", "T5062C", "G5143A", "A5191G", "G5275A", "A5282T", "C5306A", "C5311T", "T5314A", "C5356A", "A5410C", "C5444A", "T5470C", "A5493G", "C5495A", "C5552A", "G5561A", "C5567A", "C5569A", "T5614G", "T5616C", "C5620A", "A5621T", "T5626G", "T5627C", "T5670A", "A5718G", "A5731T", "A5781G", "T5801G", "-5805C", "A5825C", "G5827C", "A5828T", "C5831T", "C5834T", "T5836G", "G5839A", "G5842A", "G5848A", "C5851T", "G5861A", "G5864A", "A5866C", "G5872A", "C5887T", "G5896A", "C5923T", "G5954A", "C5956A", "G5972A", "A6009T", "G6029A", "G6037C", "C6110G", "C6116A", "T6170A", "G6171A", "G6172T", "A6174T", "A6192C", "A6194G", "G6198A", "A6208T", "A6209G", "-6211G", "-6212G", "-6213A", "-6214A", "A6215G", "-6216C", "-6217G", "-6219T", "A6324C", "A6335G", "A6346G", "A6425G", "G6458A", "A6465C", "C6469T", "A6484G", "A6547C", "G6581A", "T6599C", "G6604A", "A6605G", "C6618T", "A6628G", "A6664G", "C6678G", "G6681A", "A6682C", "C6708G", "G6716A", "C6717T", "T6720A", "T6722G", "A6723T", "T6724A", "G6725A", "A6728G", "C6729A", "G6731C", "A6737C", "T6738A", "A6744G", "T6763C", "C6767A", "C6777A", "A6798G", "A6803G", "G6819A", "-6831C", "T6835A", "A6840G", "C6859A", "G6894C", "T6928C", "A6936T", "T6946C", "A6956T", "A6957G", "T6958G", "A6972-", "A6975-", "T6976-", "T6979-", "T6991C", "-6998G", "-6999G", "-7000A", "-7002G", "-7003G", "-7005A", "-7006G", "C7020T", "A7069C", "A7088G", "G7089A", "T7147G", "A7148T", "A7153T", "T7159C", "G7160A", "G7182C", "A7269T", "A7275G", "A7313C", "A7322C", "T7403A", "A7456G", "A7504G", "G7508A", "G7589A", "C7590A", "A7604T", "T7630G", "G7631C", "A7633G", "G7689A", "T7691A", "A7693G", "G7712A", "A7747C", "T7774C", "T7866G", "C7938T", "G7947A", "A8011C", "T8016C", "C8051A", "C8065T", "C8080A", "G8104A", "G8111A", "A8152G", "A8180G", "T8209C", "G8254A", "G8267T", "T8292G", "C8294A", "G8304C", "A8367G", "T8371C", "C8383A", "T8384G", "A8409G", "C8445A", "A8458G", "G8490C", "C8491A", "C8494A", "G8528A", "T8603C", "A8617G", "A8653C", "G8654A", "C8684T", "A8728C", "T8740C", "A8746T", "T8747C", "C8771T", "A8806C", "C8825T", "G8858A", "G8922A", "A8977G", "C8999T", "A9005G", "T9012A"], "INT": ["E10D", "A23D", "V72I", "I101L", "I113V", "T125A", "G134E", "V201I", "A205S", "K211R", "L234V"], "RT-p51": ["K166R", "R211E", "I244V", "S251I", "A327V", "G335D", "I375V", "K390T"], "RT-p66": ["K166R", "R211E", "I244V", "S251I", "A327V", "G335D", "I375V", "K390T"], "gp120": ["A3T", "E4N", "D34K", "V40I", "N52I", "E59K", "Q86E", "L88I", "L106N", "N107V", "N113T", "S114G", "S115N", "-116S", "-117S", "-118V", "-119E", "-120A", "-121M", "-122E", "N157A", "T161A", "D202N", "K204T", "V243I", "F249L", "N251D", "T255I", "T275R", "R276N", "S278R", "H280R", "-282Q", "-283G", "P285I", "G286-", "R287-", "A288-", "L289-", "Y290-", "A291-", "T292-", "G293-", "E294-", "I295-", "G296-", "D297-", "I298-", "L305I", "T308E", "K315R", "I317V", "G322E", "-326T", "N327K", "K329R", "S347T", "Q361L", "-370N", "-379N", "-380T", "N385D", "P389L", "S412E", "N433S", "G443A", "K472M", "K474R"], "gp41": ["I4A", "M7L", "L34M", "V69I", "A96N", "T101S", "D109E", "E110Q", "G129D", "L130M", "E137K", "E148D", "F188C", "A212V", "G215E", "K231N", "V238A", "V270I", "S293G", "V322L", "L330R", "H331N", "R334T"], "nef": ["S9G", "M10T", "A14E", "T23A", "K39R", "A50H", "T51N", "K92R", "Q104P", "K129P", "I133T", "Y135F", "K155A", "V194M"], "p17": ["L61I", "K76R", "F79Y", "V94I", "T122A"], "p2": ["S10T", "A11-"], "p24": ["V27I", "Q116A", "K154R"], "p6": ["D32E"], "p7": ["K3R", "S4G", "R11K", "K26R", "K41R"], "pro": ["I15V", "K20R", "N61D"], "rev": ["L13I", "V16I", "L18I", "I55L", "T68E", "L73F", "L78I", "D86N", "G88D", "I102V", "E111G"], "tat": ["K12Q", "T23N", "F32L", "I39M", "T40K", "P59H", "S62N", "T64N", "H65N", "P77S", "D80N"], "vif": ["G37K", "I51V", "R92E", "I98V", "A137T", "V154T", "T155K", "I159T", "S186N"], "vpr": ["I60L", "L68M", "T84N"], "vpu": ["S3A", "Q5I", "L7A", "L27F", "I42L", "D60E", "Q61L", "E63A", "L65G", "-66D", "-68G", "M71-", "G72-", "H73-", "D74-", "A75-", "P76-", "W77-", "D78-", "V79-", "N80-", "D81-"]}, "labels": {"aa": "INT: E10D, A23D, V72I, I101L, I113V, T125A, G134E, V201I, A205S, K211R, L234V; RT-p51: K166R, R211E, I244V, S251I, A327V, G335D, I375V, K390T; RT-p66: K166R, R211E, I244V, S251I, A327V, G335D, I375V, K390T; gp120: A3T, E4N, D34K, V40I, N52I, E59K, Q86E, L88I, L106N, N107V, N113T, S114G, S115N, -116S, -117S, -118V, -119E, -120A, -121M, -122E, N157A, T161A, D202N, K204T, V243I, F249L, N251D, T255I, T275R, R276N, S278R, H280R, -282Q, -283G, P285I, G286-, R287-, A288-, L289-, Y290-, A291-, T292-, G293-, E294-, I295-, G296-, D297-, I298-, L305I, T308E, K315R, I317V, G322E, -326T, N327K, K329R, S347T, Q361L, -370N, -379N, -380T, N385D, P389L, S412E, N433S, G443A, K472M, K474R; gp41: I4A, M7L, L34M, V69I, A96N, T101S, D109E, E110Q, G129D, L130M, E137K, E148D, F188C, A212V, G215E, K231N, V238A, V270I, S293G, V322L, L330R, H331N, R334T; nef: S9G, M10T, A14E, T23A, K39R, A50H, T51N, K92R, Q104P, K129P, I133T, Y135F, K155A, V194M; p17: L61I, K76R, F79Y, V94I, T122A; p2: S10T, A11-; p24: V27I, Q116A, K154R; p6: D32E; p7: K3R, S4G, R11K, K26R, K41R; pro: I15V, K20R, N61D; rev: L13I, V16I, L18I, I55L, T68E, L73F, L78I, D86N, G88D, I102V, E111G; tat: K12Q, T23N, F32L, I39M, T40K, P59H, S62N, T64N, H65N, P77S, D80N; vif: G37K, I51V, R92E, I98V, A137T, V154T, T155K, I159T, S186N; vpr: I60L, L68M, T84N; vpu: S3A, Q5I, L7A, L27F, I42L, D60E, Q61L, E63A, L65G, -66D, -68G, M71-, G72-, H73-, D74-, A75-, P76-, W77-, D78-, V79-, N80-, D81-"}}}]}]}]}, {"name": "NODE_0000206", "node_attrs": {"div": 0.13737, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A1670C", "A2407G", "T2581C", "G3019A", "G3154A", "A3259G", "A3292T", "T3368C", "C3376T", "A3387C", "A3391G", "T3399C", "T3412C", "T3544G", "C3545T", "C3940T", "T4006C", "C4015T", "A4021G", "T4024C", "A4025C", "T4042C", "G4051A", "G4057A", "A4069C", "T4075C", "C4078A", "T4079C", "G4174A", "C4195A", "T4258C", "C4726G", "T4727A", "G4765A", "C4820T", "C4871G", "T4907C", "C4911A", "G4913A", "T4943C", "A4949G", "T4967A", "T4969A", "T5062C", "G5366A", "T5448A", "T5778C", "A5787C", "C5792-", "A5793-", "T5799-", "-5821G", "-5822G", "-5823G", "G6167A", "-6207G", "G6379A", "A6773G", "A6818G", "A6932T", "C6935A", "T7813C", "A7929G", "A8796C", "C8883T", "A8912G", "G8922A"], "INT": ["I84L", "T124A", "S283G"], "RT-p51": ["D123E", "E399D", "K431T", "V435A"], "RT-p66": ["D123E", "E399D", "K431T", "V435A", "H483Q"], "gp120": ["-119M", "R307G", "Q361K"], "gp41": ["A96T", "H209R"], "tat": ["T74A"], "vif": ["T47R", "G60E", "I128K", "I159T"], "vpu": ["M67-"]}, "labels": {"aa": "INT: I84L, T124A, S283G; RT-p51: D123E, E399D, K431T, V435A; RT-p66: D123E, E399D, K431T, V435A, H483Q; gp120: -119M, R307G, Q361K; gp41: A96T, H209R; tat: T74A; vif: T47R, G60E, I128K, I159T; vpu: M67-"}}, "children": [{"name": "results/subtype_trees/CRF99_BF1.nwk", "node_attrs": {"div": 0.16716, "clade_membership": {"value": "CRF99_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C227A", "-305A", "G354A", "A359G", "G407A", "A417C", "A485G", "T539A", "T668C", "A699G", "C713T", "G743A", "C749A", "A774T", "G806A", "G810A", "T827C", "C830T", "G869A", "T897C", "T902C", "C1013T", "C1244T", "T1260G", "G1261C", "A1265C", "A1271G", "G1277A", "G1278A", "G1279A", "A1307G", "C1331T", "G1388A", "A1397G", "T1403C", "A1404G", "G1412A", "C1444T", "A1446-", "C1447-", "A1448-", "G1455A", "T1457C", "-1458A", "-1459C", "-1460C", "T1478C", "A1486G", "G1488A", "G1489A", "G1498A", "A1499G", "T1501C", "T1514C", "A1543G", "A1589G", "C1610T", "A1619G", "T1752C", "A1774G", "C1853T", "T1868C", "T1978G", "T2013C", "G2026A", "A2038G", "T2071A", "T2083C", "C2206T", "G2473A", "T2485C", "G2518A", "T2527C", "C2575T", "A2579T", "T2632C", "C2635T", "G2683A", "G2704A", "G2710A", "G2722A", "G2914A", "A2920G", "C2975A", "C2978T", "T3059A", "A3079G", "A3316G", "C3322A", "T3349C", "A3450T", "G3556A", "A3571G", "C3589T", "T3668C", "A3674C", "G3694T", "A3697G", "G3755A", "C3756G", "T3793A", "G3805T", "A3808G", "A3817G", "T3970C", "A4107C", "T4153C", "A4225G", "C4321T", "C4381T", "T4412C", "A4498G", "C4501G", "C4757T", "G4767A", "A4773G", "A4859G", "C4902T", "T4932G", "G4986A", "T4988C", "A5049G", "A5051T", "A5057G", "A5061G", "C5062A", "A5069G", "A5122G", "G5187C", "G5225A", "G5246A", "A5248C", "T5251C", "G5257A", "C5268A", "G5275T", "C5281T", "A5290G", "T5293A", "C5294T", "G5305A", "T5314C", "T5333C", "A5336T", "T5415C", "C5451T", "T5487C", "A5555C", "C5567A", "T5576C", "C5602T", "C5679T", "T5686C", "A5689C", "C5727T", "A5734C", "T5739C", "A5784G", "T5788C", "T5789A", "T5791-", "G5794-", "C5795-", "A5796-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5819T", "-5820G", "G5861A", "G5864C", "T5899A", "A5908G", "A5915T", "C5964T", "A6065G", "A6076G", "A6112G", "T6134C", "A6180C", "C6189G", "-6203G", "-6204T", "-6205T", "A6206G", "-6210A", "-6211A", "-6212G", "-6214G", "-6217G", "-6219A", "G6223-", "G6269A", "C6278A", "A6286C", "A6346G", "G6451A", "A6484G", "A6520G", "G6525A", "G6547A", "A6602T", "G6638A", "G6709A", "A6727C", "T6763C", "C6777A", "A6779G", "A6780C", "A6788G", "A6799G", "A6803G", "C6807T", "-6830A", "-6831A", "-6832A", "G6884A", "G6937A", "A6960-", "C6991-", "C7014T", "C7045T", "A7090T", "G7126-", "A7138G", "T7150A", "G7190A", "G7197A", "A7372C", "A7373T", "A7396G", "G7459A", "G7631T", "A7633C", "G7640A", "A7666G", "C7702A", "A7714C", "T7715G", "A7729G", "A7764C", "T7774C", "A7880G", "A7915G", "C7931T", "C7941A", "A7974G", "A7988C", "G7989A", "A7995G", "C8005A", "A8017G", "T8103C", "A8105G", "A8143G", "G8144A", "T8159G", "C8167A", "G8170A", "G8204A", "G8245A", "G8255A", "G8335A", "G8368A", "A8456G", "T8462C", "A8474T", "C8504T", "G8537A", "G8654A", "G8666C", "C8687T", "C8775T", "C8934A", "T8935A", "A8947T", "C8971T", "G9132A"], "INT": ["D6E", "E10D", "K111T", "E256D"], "RT-p51": ["S162C", "P294T", "S322T"], "RT-p66": ["S162C", "P294T", "S322T", "K527Q", "A554S"], "gp120": ["A3T", "E4Q", "T21S", "A37V", "N71D", "N109A", "T112S", "-118E", "D139N", "Q142K", "E144D", "R224K", "T250S", "E262K", "I281M", "T308E", "K309A", "I317V", "A318V", "-326K", "V344I", "D384-", "T385-", "T387I", "N432-", "D446N", "R448K"], "gp41": ["V24L", "E110Y", "D113N", "E137D", "S138A", "E148D", "I193V", "L210F", "P213Q", "E224G", "R229Q", "K231R", "V267A", "T268A", "A281T", "W286G", "V301I", "V318I"], "nef": ["S9N", "E108D", "E151D", "L198K", "Y202F"], "p17": ["V7I", "K28Q", "K91R", "A119T", "T122A"], "p2": ["T8-", "A11T"], "p24": ["I6L", "I15L", "V27I", "C177A", "G183N", "S225G"], "p6": ["P5T", "D32G"], "p7": ["S4G", "K7R", "G8N", "R11K", "I12T", "K26R"], "pro": ["D60E", "I72T", "M89L"], "rev": ["K14Q", "L18I", "F21L", "P28L", "E47A", "H53N", "R57G", "D86S", "S99D", "V104G", "P107T", "A108T"], "tat": ["P59H", "Q60P", "V67A"], "vif": ["E61K", "K63E", "K91Q", "S116A", "D134N", "T155A", "T159E"], "vpr": ["S28T", "G41S", "E48N", "A55E", "Q77H"], "vpu": ["I28L", "I43L", "-69V", "-70E"]}, "labels": {"aa": "INT: D6E, E10D, K111T, E256D; RT-p51: S162C, P294T, S322T; RT-p66: S162C, P294T, S322T, K527Q, A554S; gp120: A3T, E4Q, T21S, A37V, N71D, N109A, T112S, -118E, D139N, Q142K, E144D, R224K, T250S, E262K, I281M, T308E, K309A, I317V, A318V, -326K, V344I, D384-, T385-, T387I, N432-, D446N, R448K; gp41: V24L, E110Y, D113N, E137D, S138A, E148D, I193V, L210F, P213Q, E224G, R229Q, K231R, V267A, T268A, A281T, W286G, V301I, V318I; nef: S9N, E108D, E151D, L198K, Y202F; p17: V7I, K28Q, K91R, A119T, T122A; p2: T8-, A11T; p24: I6L, I15L, V27I, C177A, G183N, S225G; p6: P5T, D32G; p7: S4G, K7R, G8N, R11K, I12T, K26R; pro: D60E, I72T, M89L; rev: K14Q, L18I, F21L, P28L, E47A, H53N, R57G, D86S, S99D, V104G, P107T, A108T; tat: P59H, Q60P, V67A; vif: E61K, K63E, K91Q, S116A, D134N, T155A, T159E; vpr: S28T, G41S, E48N, A55E, Q77H; vpu: I28L, I43L, -69V, -70E", "clade": "CRF99_BF1"}}, "children": [{"name": "MH986013", "node_attrs": {"div": 0.19908, "accession": "MH986013", "clade_membership": {"value": "CRF99_BF1"}, "country": {"value": "BR"}, "date": {"value": 2009.0}, "Strain_name": {"value": "BRGO4056"}, "LANL_subtype": {"value": "CRF99_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "A386G", "G409T", "A527G", "T635C", "G656A", "A676G", "G690A", "A697G", "A779G", "G818A", "A839G", "T983C", "T1046A", "C1245T", "C1292A", "C1316T", "T1325C", "C1362T", "G1394A", "C1439T", "C1456A", "A1474G", "C1481T", "A1562G", "C1692A", "-1746C", "-1747C", "-1748C", "C1749T", "G1760A", "A1841G", "A1906G", "A2014T", "A2056G", "G2230A", "A2275G", "C2281T", "T2434C", "T2443C", "C2452A", "A2498G", "A2665G", "G2727T", "G2828A", "T2829A", "A2937G", "A2938G", "A2951G", "A2985G", "G3094A", "A3154G", "G3173A", "A3193G", "G3221T", "A3224C", "C3225A", "T3262C", "T3292A", "G3334A", "C3346T", "G3379A", "C3405T", "G3442C", "T3526A", "G3544T", "A3547G", "C3610T", "A3684G", "A3816G", "A3824T", "T3826C", "A3835G", "T3977C", "C3995A", "C4072T", "A4084G", "C4089T", "C4131G", "A4148G", "C4149T", "G4156A", "T4165C", "G4183T", "T4198C", "C4210T", "G4294A", "A4423C", "G4501T", "A4531G", "T4585C", "T4655C", "T4678C", "T4701A", "A4774T", "A4788G", "T4799C", "A4865G", "A4877G", "G4932A", "T4938A", "G5024A", "T5073C", "G5075A", "A5324G", "A5372G", "G5412T", "A5414T", "A5422-", "A5446C", "T5471A", "C5490T", "C5539A", "A5567G", "G5575A", "C5581T", "A5583T", "A5607G", "T5616C", "A5637G", "G5638T", "A5643G", "A5701G", "G5725A", "A5751G", "C5778T", "C5797-", "T5798-", "T5801A", "-5804A", "-5805A", "-5806T", "-5807T", "-5808A", "-5809C", "-5810T", "-5818T", "C5831T", "T5850G", "G5856A", "C5867-", "A5868-", "A5869-", "G5896A", "A5957C", "G5963A", "T5964A", "T5974C", "A6015T", "A6030T", "A6130C", "T6170G", "A6174C", "A6177T", "G6179C", "A6182G", "G6195A", "G6206T", "G6207T", "G6212A", "-6213T", "-6216A", "G6220C", "-6221G", "-6223A", "G6224-", "G6225-", "A6226-", "G6227-", "A6228-", "A6229-", "A6234G", "A6260G", "A6279G", "A6303T", "G6311A", "G6314A", "T6315C", "T6325A", "A6327G", "C6345T", "C6375A", "A6425G", "T6445C", "A6466T", "A6481T", "C6482T", "C6483G", "A6489G", "A6565G", "A6584G", "G6588A", "G6631A", "T6637G", "A6641T", "C6667A", "A6668G", "A6669G", "A6683G", "-6697G", "T6721C", "G6725A", "G6731A", "G6732A", "A6734G", "C6758T", "G6773A", "C6780G", "A6781T", "C6790A", "G6799C", "T6827G", "A6833G", "T6835G", "A6842-", "C6843-", "A6844-", "C6922T", "A6944G", "-6956G", "-6957C", "-6960C", "-6961C", "-6963G", "-6964T", "-6968G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975A", "-6977G", "-6978C", "-6979C", "-6980A", "-6981C", "-6982T", "-6983T", "-6984G", "-6985G", "-6991G", "-6995G", "-6996G", "-6997G", "-6998G", "-6999A", "-7000T", "-7001A", "-7002G", "-7005A", "-7006T", "C7094A", "A7102C", "C7107T", "-7126T", "C7134T", "A7148G", "C7156T", "C7165A", "A7239G", "A7303G", "A7426G", "C7486T", "G7508C", "A7604G", "A7620G", "G7660A", "A7713G", "C7714G", "A7722T", "A7747C", "T7762G", "A7846C", "G7847A", "G7890A", "C7930A", "C7960A", "A7963C", "A7998G", "A8011C", "C8145T", "A8230C", "G8267C", "T8279G", "T8290C", "T8321C", "A8323G", "A8409G", "T8426A", "T8440C", "G8446A", "A8455G", "A8469C", "G8476A", "C8546T", "C8590G", "C8609T", "G8739A", "T8740C", "A8746T", "A8780G", "G8805A", "T8813C", "G8858A", "G8912A", "T8914A", "A8930C", "C8948T", "A9009G", "T9029A", "T9074C"], "INT": ["K14R", "S17C", "L74M", "A105V", "T125V", "K136N", "Q216H"], "RT-p51": ["I135V", "R211M", "V245K", "K281R", "T286A", "K297R", "A360T", "A376S", "T377Q", "D399E", "A437V"], "RT-p66": ["I135V", "R211M", "V245K", "K281R", "T286A", "K297R", "A360T", "A376S", "T377Q", "D399E", "A437V", "E449D", "Q483H", "K530R"], "gp120": ["S1N", "Q5-", "T35P", "V37K", "Q54L", "E59V", "L106V", "-107T", "N108I", "A109P", "T110A", "S112A", "-116V", "-117L", "E118K", "E122-", "-123K", "G124D", "K127R", "S136G", "K142R", "K150I", "V153I", "V154T", "D159T", "N160S", "T164K", "T174K", "K204N", "P210W", "K212R", "I244V", "R245K", "N261K", "T263S", "N272G", "K277E", "A291T", "G293K", "D294V", "H302Y", "G307R", "A309G", "N312E", "K315N", "F325V", "N327E", "T330-", "T360S", "N364D", "-368A", "N369R", "-370S", "-372N", "-373D", "-374T", "-375H", "Q414K", "R416S", "S418L", "T427I", "-432E", "K462R"], "gp41": ["I4T", "V69L", "T101A", "K106R", "D137G", "N140I", "D153E", "K154T", "L181F", "V182I", "R196K", "E220D", "D232G", "T281I", "V322L"], "nef": ["T23A", "D28E", "V33A", "R35Q", "E38G", "I43L", "S45N", "A83G", "V85L", "V133T", "Y135F", "E155K", "F191Y"], "p17": ["G25V", "K114R", "D121G"], "p2": ["A7V", "T11N"], "p24": ["D187E"], "p6": ["G32S"], "p7": ["K3R"], "pro": ["I15V", "I36M"], "rev": ["S8R", "I18V", "Y23F", "L28I", "I55L"], "tat": ["K12N", "H13L", "S16-"], "vif": ["I31T", "F39I", "E63V", "T68A", "A116T", "S118T", "K179R"], "vpu": ["A11S", "K32E", "D40N", "M71L", "A75V", "D81E"]}, "labels": {"aa": "INT: K14R, S17C, L74M, A105V, T125V, K136N, Q216H; RT-p51: I135V, R211M, V245K, K281R, T286A, K297R, A360T, A376S, T377Q, D399E, A437V; RT-p66: I135V, R211M, V245K, K281R, T286A, K297R, A360T, A376S, T377Q, D399E, A437V, E449D, Q483H, K530R; gp120: S1N, Q5-, T35P, V37K, Q54L, E59V, L106V, -107T, N108I, A109P, T110A, S112A, -116V, -117L, E118K, E122-, -123K, G124D, K127R, S136G, K142R, K150I, V153I, V154T, D159T, N160S, T164K, T174K, K204N, P210W, K212R, I244V, R245K, N261K, T263S, N272G, K277E, A291T, G293K, D294V, H302Y, G307R, A309G, N312E, K315N, F325V, N327E, T330-, T360S, N364D, -368A, N369R, -370S, -372N, -373D, -374T, -375H, Q414K, R416S, S418L, T427I, -432E, K462R; gp41: I4T, V69L, T101A, K106R, D137G, N140I, D153E, K154T, L181F, V182I, R196K, E220D, D232G, T281I, V322L; nef: T23A, D28E, V33A, R35Q, E38G, I43L, S45N, A83G, V85L, V133T, Y135F, E155K, F191Y; p17: G25V, K114R, D121G; p2: A7V, T11N; p24: D187E; p6: G32S; p7: K3R; pro: I15V, I36M; rev: S8R, I18V, Y23F, L28I, I55L; tat: K12N, H13L, S16-; vif: I31T, F39I, E63V, T68A, A116T, S118T, K179R; vpu: A11S, K32E, D40N, M71L, A75V, D81E"}}}, {"name": "CRF99_BF1_NODE_0000001", "node_attrs": {"div": 0.17262, "clade_membership": {"value": "CRF99_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A286G", "G809A", "G1355A", "G1430A", "A1508G", "C1613T", "G1673A", "C1730T", "A2404C", "T2431A", "A2693G", "C2769A", "A2929G", "A3192G", "C4786T", "G5123A", "G5226A", "A5421G", "C5552A", "T5651C", "-5818A", "G5954A", "A5955G", "A6022G", "-6216T", "A6222-", "A6723T", "G6894-", "T6932-", "A6992-", "C6993-", "T6994-", "T7047-", "A7154-", "A7155-", "A7313T", "G7689A", "A7710G", "G7753A"], "RT-p51": ["K103N", "T200A", "P225H", "K366R"], "RT-p66": ["K103N", "T200A", "P225H", "K366R"], "gp120": ["D34S", "M119K", "A191T", "Y290F", "I331V", "A332-"], "gp41": ["G129D", "E136G"], "rev": ["L13I"], "vif": ["T67I"], "vpr": ["D7N"], "vpu": ["V15A"]}, "labels": {"aa": "RT-p51: K103N, T200A, P225H, K366R; RT-p66: K103N, T200A, P225H, K366R; gp120: D34S, M119K, A191T, Y290F, I331V, A332-; gp41: G129D, E136G; rev: L13I; vif: T67I; vpr: D7N; vpu: V15A"}}, "children": [{"name": "MH986014", "node_attrs": {"div": 0.19362, "accession": "MH986014", "clade_membership": {"value": "CRF99_BF1"}, "country": {"value": "BR"}, "date": {"value": 2008.0}, "Strain_name": {"value": "BRGO4028"}, "LANL_subtype": {"value": "CRF99_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T201C", "A220G", "G224A", "A227T", "A305T", "G379A", "T426C", "C462A", "G480A", "C536T", "T571A", "A592T", "G599A", "C641T", "G690A", "T789C", "A803G", "A836G", "C893A", "A932G", "G1192A", "C1264G", "G1271T", "G1313T", "T1344A", "T1385C", "T1444-", "A1445-", "-1447C", "-1448A", "A1580G", "G1691A", "A1743G", "C1752T", "G1766A", "A1768C", "G1784A", "A1819G", "A1988G", "A2398G", "T2499C", "C2632T", "C2644T", "A2645G", "A2738T", "C2739A", "A2755G", "A2808C", "C2942A", "T2944C", "G3162A", "C3303A", "C3405T", "T3566C", "T3567C", "A3578G", "T3644G", "A3666T", "G3680A", "G3685A", "G3716A", "G3717A", "G3726A", "C4107A", "A4130C", "C4140T", "A4391T", "C4576T", "T4674C", "A4709G", "T4776A", "G4864A", "G4871A", "C5027T", "G5060A", "G5069T", "C5116A", "A5119G", "G5122A", "G5179A", "G5185A", "A5225C", "C5227A", "T5286C", "G5386A", "C5415T", "G5437C", "A5462G", "A5560T", "A5567T", "T5614C", "A5677T", "C5689G", "A5720G", "G5747A", "C5788-", "A5789-", "A5790-", "T5798A", "-5799G", "T5801A", "G5802A", "-5804A", "-5805A", "-5806T", "-5807T", "-5808G", "-5809C", "-5810T", "C5862A", "C5864G", "A5921C", "C5923T", "A5995G", "G6020A", "G6023A", "A6025G", "G6076C", "A6079G", "C6134T", "T6155A", "A6157G", "T6170G", "G6195A", "G6201C", "T6205G", "G6207A", "-6213A", "A6230C", "T6250G", "G6261A", "A6270G", "T6271G", "C6286A", "A6303C", "C6317G", "G6329-", 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"G8954A", "T8966C", "C8967T", "T9072C", "T9109A"], "INT": ["T111K", "S119P", "T122I", "T206S"], "RT-p51": ["I135T", "M184V", "T215Y", "K238T", "L283I", "R356K", "T403K", "A437V"], "RT-p66": ["I135T", "M184V", "T215Y", "K238T", "L283I", "R356K", "T403K", "A437V", "L491P", "I495V", "L517V", "Q524L", "E529K", "G541K", "G544E"], "gp120": ["T3K", "Q4E", "T23P", "V56M", "V57M", "E74D", "L101M", "L106V", "-107N", "S114N", "-116T", "-117V", "-120E", "-121M", "M126L", "N132K", "S136N", "N139R", "D144E", "K150T", "P155A", "D159-", "N160-", "Y163F", "S181T", "M281I", "A288T", "G322R", "K329I", "N334T", "S347T", "-368Y", "-370N", "-372W", "-373N", "-374T", "-375E", "-376D", "-377S", "-378N", "-379N", "-380G", "-385T", "M398R", "M406I", "-432R", "N433G", "N434G", "T437S"], "gp41": ["G3T", "I4F", "L24M", "Q66R", "L108Q", "Y110E", "D125S", "N160S", "D163N", "K172R", "L289I", "A310T", "I325F", "G326C"], "nef": ["A15T", "E63D", "E65D", "N157T", "C163S", "R178K", "M182I", "Y203F"], "p17": ["R15K", "G49S", "F79Y", "Y86F"], "p24": ["R154K", "T178S", "E180D", "L205M"], "p6": ["T5P", "T22A", "Q30P", "N47S"], "pro": ["I64V"], "rev": ["I18F", "D88N", "T107N"], "tat": ["V4I", "A21P", "K29R", "S62C", "T64I"], "vif": ["Y30H", "L64I", "R93K", "P177H", "Q178R"], "vpr": ["S41Q", "I61T", "S94N"], "vpu": ["S3P", "T24S", "L28V", "K38R", "R47K"]}, "labels": {"aa": "INT: T111K, S119P, T122I, T206S; RT-p51: I135T, M184V, T215Y, K238T, L283I, R356K, T403K, A437V; RT-p66: I135T, M184V, T215Y, K238T, L283I, R356K, T403K, A437V, L491P, I495V, L517V, Q524L, E529K, G541K, G544E; gp120: T3K, Q4E, T23P, V56M, V57M, E74D, L101M, L106V, -107N, S114N, -116T, -117V, -120E, -121M, M126L, N132K, S136N, N139R, D144E, K150T, P155A, D159-, N160-, Y163F, S181T, M281I, A288T, G322R, K329I, N334T, S347T, -368Y, -370N, -372W, -373N, -374T, -375E, -376D, -377S, -378N, -379N, -380G, -385T, M398R, M406I, -432R, N433G, N434G, T437S; gp41: G3T, I4F, L24M, Q66R, L108Q, Y110E, D125S, N160S, D163N, K172R, L289I, A310T, I325F, G326C; nef: A15T, E63D, E65D, N157T, C163S, R178K, M182I, Y203F; p17: R15K, G49S, F79Y, Y86F; p24: R154K, T178S, E180D, L205M; p6: T5P, T22A, Q30P, N47S; pro: I64V; rev: I18F, D88N, T107N; tat: V4I, A21P, K29R, S62C, T64I; vif: Y30H, L64I, R93K, P177H, Q178R; vpr: S41Q, I61T, S94N; vpu: S3P, T24S, L28V, K38R, R47K"}}}, {"name": "MH986015", "node_attrs": {"div": 0.19362, "accession": "MH986015", "clade_membership": {"value": "CRF99_BF1"}, "country": {"value": "BR"}, "date": {"value": 2008.0}, "Strain_name": {"value": "BRGO4013"}, "LANL_subtype": {"value": "CRF99_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A256-", "C417A", "G468T", "G471A", "T495C", "A530G", "G579A", "G607A", "G678A", "G771C", "T774A", "T861G", "G908A", "A968C", "G1019A", "A1089G", "C1096A", "G1443A", "A1445G", "T1452C", "C1457T", "G1461A", "C1481T", "A1500G", "T1511C", "C1556T", "C1670A", "C1692A", "A1701T", "-1746C", "-1747C", "-1748C", "C1749T", "C1751T", "T1754G", "C1756A", "G1972A", "C2404T", "A2459G", 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"N435-", "E436-", "T437-", "E438-", "T439-", "F440-", "R441-", "P442-", "G443-", "G444-", "G445-", "N446-", "M447-", "K448-", "D449-", "N450-", "W451-", "R452-", "S453-", "E454-", "L455-", "Y456-", "K457-", "Y458-", "K459-", "V460-", "V461-", "K462-", "I463-", "E464-", "P465-", "L466-"], "gp41": ["I4L", "V69I", "K77Q", "T96A", "N140R", "D148E", "Q151K", "K154T", "S165T", "N166K", "I177V", "V182I", "V187I", "D230G", "H258R", "R259H"], "p17": ["Q28K", "A45S", "V46I", "S54P", "V82I", "R91K", "A115T", "T119A"], "p2": ["A7M", "S10P", "V13I"], "p24": ["A14P", "L15I", "S44A", "E79D", "M96I", "S120G", "P122Q"], "p6": ["T8S", "-26Q"], "p7": ["T12A"], "rev": ["D9E", "P67S", "A68T", "I102V"], "tat": ["T64N", "A67T"], "vif": ["K34R", "F39Y", "E60D", "V66I", "R95S", "L102M", "I109L", "K179R", "N190S"], "vpr": ["P37T", "S41N", "Y45H", "H77F"], "vpu": ["Q5I", "L82Q"]}, "labels": {"aa": "INT: V72I, S119T, V201I; RT-p51: K122E, E123D, I135L, E138G, L228C, V245M, K277R, T322A, Q334L, N418S; RT-p66: K122E, E123D, I135L, E138G, L228C, V245M, K277R, T322A, Q334L, N418S, L452I, Q509L, L525V, Q527K, V531I; gp120: V56L, E59D, D71S, -107R, A109V, N113T, -116N, -117G, E118G, K119N, -120G, -121V, G138K, M141I, K143T, I156L, N158K, N167S, N169K, T170N, V172E, D202E, K212T, P285V, G307E, E308Q, N312E, T313A, K315E, K329Q, S336H, D340A, I344-, M345-, H346-, S347-, F348-, N349-, C350-, G351-, G352-, E353-, F354-, F355-, Y356-, C357-, N358-, T359-, T360-, K361-, L362-, F363-, N364-, S365-, T366-, W367-, N369-, T371-, I386-, I387-, L388-, P389-, C390-, R391-, I392-, K393-, Q394-, I395-, I396-, N397-, M398-, W399-, Q400-, E401-, V402-, G403-, K404-, A405-, M406-, Y407-, A408-, P409-, P410-, I411-, S412-, G413-, Q414-, I415-, R416-, C417-, S418-, S419-, N420-, I421-, T422-, G423-, L424-, L425-, L426-, T427-, R428-, D429-, G430-, G431-, N433-, N434-, N435-, E436-, T437-, E438-, T439-, F440-, R441-, P442-, G443-, G444-, G445-, N446-, M447-, K448-, D449-, N450-, W451-, R452-, S453-, E454-, L455-, Y456-, K457-, Y458-, K459-, V460-, V461-, K462-, I463-, E464-, P465-, L466-; gp41: I4L, V69I, K77Q, T96A, N140R, D148E, Q151K, K154T, S165T, N166K, I177V, V182I, V187I, D230G, H258R, R259H; p17: Q28K, A45S, V46I, S54P, V82I, R91K, A115T, T119A; p2: A7M, S10P, V13I; p24: A14P, L15I, S44A, E79D, M96I, S120G, P122Q; p6: T8S, -26Q; p7: T12A; rev: D9E, P67S, A68T, I102V; tat: T64N, A67T; vif: K34R, F39Y, E60D, V66I, R95S, L102M, I109L, K179R, N190S; vpr: P37T, S41N, Y45H, H77F; vpu: Q5I, L82Q"}}}]}]}, {"name": "results/subtype_trees/CRF29_BF1.nwk", "node_attrs": {"div": 0.15092999999999998, "clade_membership": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G265A", "G607A", "G677A", "A697G", "G771C", "T1452A", "G1476A", "T1783A", "C2063A", "G2714C", "T2908C", "G3334A", "G3431T", "G3439A", "T3445C", "C3449A", "T3492C", "C3508G", "A3511C", "A3524G", "G3553A", "T3567C", "A3595G", "G3651A", "G3667A", "G3695T", "A3718G", "G3766A", "G3770A", "A3775G", "A3787G", "C3799A", "A3802G", "G3825A", "T3826C", "C3856T", "C3889T", "A3901G", "A3916G", "A3952G", "C3962T", "A4084G", "A4130C", "T4147C", "A4148G", "C4159A", "G4177T", "A4181C", "G4354A", "G4376A", "T4471C", "C4475G", "A4525C", "T4534C", "C4543A", "A4549G", "G4555A", "T4674C", "G4695A", "G4782A", "T4799G", "T4827C", "A4865G", "T4988G", "T5102C", "C5548A", "A5721G", "G5811-", "A6208-", "A6209-", "G6392A", "-6703A", "T6976-", "-6977A", "-6978A", "-6981G", "-6985T", "-6995G", "-6996A", "A7155G", "T7159C", "A7604G", "C7702T", "T7796A", "A7818G", "G8304C", "T8426A", "A8503C", "G8528A", "G8954A"], "INT": ["S17N", "S119P", "K136Q", "V201I", "L234V"], "RT-p51": ["E207Q"], "RT-p66": ["E207Q", "A446S", "L452K", "V466A", "D471E", "T477A", "L491S", "S519N", "A534S", "V559I"], "gp120": ["-116S", "E311K", "T360S"], "gp41": ["T101A", "S165T", "R334T"], "nef": ["D28E"], "p17": ["D102E", "D121G"], "p2": ["S10T"], "p24": ["A14P"], "rev": ["P31S"], "vif": ["Y30H", "G37R", "V66I", "D134E"]}, "labels": {"aa": "INT: S17N, S119P, K136Q, V201I, L234V; RT-p51: E207Q; RT-p66: E207Q, A446S, L452K, V466A, D471E, T477A, L491S, S519N, A534S, V559I; gp120: -116S, E311K, T360S; gp41: T101A, S165T, R334T; nef: D28E; p17: D102E, D121G; p2: S10T; p24: A14P; rev: P31S; vif: Y30H, G37R, V66I, D134E", "clade": "CRF29_BF1"}}, "children": [{"name": "CRF29_BF1_NODE_0000001", "node_attrs": {"div": 0.15494999999999998, "clade_membership": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A1588G", "A2038G", "C3252T", "G3283A", "G3442A", "A4195C", "C4258T", "G4871C", "A4911C", "C4943T", "G4949A", "A4966G", "A4967T", "A4969T", "C4976A", "G5179A", "T5576C", "A5790G", "-5793A", "A6079G", "C6966A", "T6985A", "T7150C", "G7640A", "C7813T", "C8209T", "C8795A"], "RT-p51": ["T386I"], "RT-p66": ["T386I"], "gp120": ["-368N", "-370S"], "gp41": ["D113N", "R209H"], "p7": ["K41R"], "rev": ["F21L"], "tat": ["V67A", "A74T"], "vif": ["R95S", "Q127R", "K128I", "S130R"]}, "labels": {"aa": "RT-p51: T386I; RT-p66: T386I; gp120: -368N, -370S; gp41: D113N, R209H; p7: K41R; rev: F21L; tat: V67A, A74T; vif: R95S, Q127R, K128I, S130R"}}, "children": [{"name": "AY771590", "node_attrs": {"div": 0.21084999999999998, "accession": "AY771590", "clade_membership": {"value": "CRF29_BF1"}, "country": {"value": "BR"}, "date": {"value": 2002.0}, "Strain_name": {"value": "BREPM119"}, "LANL_subtype": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T396C", "A423C", "A425G", "A435G", "A500G", "C510A", "A518G", "G520A", "C536T", "C587T", "T635C", "C641G", "G671A", "A673G", "A674T", "G678-", "C679-", "A680-", "C707T", "A725G", "C747A", "A764G", "G770A", "T777G", "A791G", "G806A", "G809A", "A815G", "C830T", "T858C", "G869A", "C890T", "A903T", "C944T", "T978G", "C1004T", "C1220T", "A1226G", "C1245T", "T1260G", "G1261C", "G1278A", "G1279A", "T1334C", "G1394A", "A1418G", "A1442C", "G1461A", "A1464C", "G1466A", "A1500G", "A1592G", "G1673A", "G1709A", "G1725A", "C1730T", "C1767G", "G1769A", "A1772G", "G1773A", "A1783T", "C1826T", "A1832G", "C1833A", "G1840A", "A1841G", "T1978G", "G2023A", "C2098T", "T2104C", "A2113G", "C2206T", "G2230A", "T2263C", "T2365C", "C2386T", "G2392A", "A2396C", "A2404G", "G2407A", "T2458C", "A2464T", "T2520C", "A2545G", "G2548A", "A2551G", "A2566G", "C2581T", "A2641G", "C2644T", "A2645G", "G2664C", "C2671T", "G2686A", "A2734G", "A2755G", "T2778A", "G2828A", "G2914A", "A2920G", "A2951G", "C3067T", "G3088A", "T3165C", "A3230G", "G3259A", "A3264G", "A3367G", "A3490G", "T3497C", "T3530C", "A3535T", "A3616G", "T3628C", "G3631A", "A3667C", "G3680A", "A3681C", "A3761G", "A3808C", "G3836T", "T3850C", "G3866A", "C3892T", "G3917A", "T3977G", "C3995A", "G3997A", "C4024T", "A4063G", "C4068G", "C4069T", "A4107G", "C4140T", "G4145A", "C4147T", "A4159C", "T4177G", "C4181A", "A4243G", "G4263A", "G4268A", "G4388T", "A4407G", "T4444C", "G4464A", "C4471T", "G4475A", "A4522G", "G4622A", "G4673A", "A4693G", "G4696A", "T4703G", "T4717A", "G4723A", "G4735A", "C4786T", "T4793C", "T4805G", "A4859G", "C4871T", "A4878G", "C4911T", "T4912C", "T4914C", "G4923A", "C4977T", "A5005C", "C5006A", "T5018C", "A5046C", "A5056G", "G5086A", "G5131A", "C5132T", "A5159G", "C5162T", "T5170A", "T5197G", "G5212A", "C5213G", "C5214T", "A5215G", "G5225A", "A5233G", "G5267A", "A5282C", "T5293A", "A5330G", "A5366G", "G5370C", "G5437C", "C5444A", "A5448T", "T5457C", "A5462G", "G5463A", "T5466C", "C5469T", "G5482A", "T5483A", "T5484G", "A5548T", "C5554A", "A5555G", "A5556G", "G5557C", "A5564C", "A5566G", "T5578C", "A5594G", "G5599A", "C5602T", "A5607G", "C5611T", "A5612T", "T5614C", "A5622G", "T5626G", "G5638T", "A5655C", "A5696T", "A5720G", "G5721A", "C5727T", "A5731T", "A5751C", "A5781G", "C5787A", "-5792C", "-5799T", "-5804G", "-5805A", "-5806A", "-5807T", "-5808G", "-5809G", "-5810G", "-5811G", "G5821-", "G5822-", "G5823-", "G5827C", "A5828T", "G5861-", "C5862-", "A5863-", "G5896A", "C5923T", "G5939A", "G5951T", "T5952A", "C5956T", "T5974G", "T6007C", "A6008G", "G6016A", "G6020A", "G6023C", "T6024C", "G6029A", "A6031G", "A6065G", "G6086C", "G6088A", "C6097T", "A6119C", "C6163T", "C6165G", "A6167G", "G6172A", "A6173G", "A6174G", "T6175G", "G6179A", "T6187C", "A6200G", "G6201A", "T6202C", "-6203T", "-6204G", "-6205G", "A6206G", "-6208A", "-6212A", "-6213G", "-6214A", "-6216T", "-6217G", "-6219A", "-6221A", "G6223A", "C6238T", "G6251A", "A6260G", "G6261A", "A6263C", "G6266A", "T6276A", "C6293G", "A6313G", "G6314A", "T6315C", "A6324G", "T6325A", "A6337T", "C6345G", "C6347T", "A6354G", "T6355C", "C6364T", "A6371C", "A6379G", "T6393C", "A6403G", "A6425G", "T6436C", "C6443A", "A6448G", "C6477G", "A6478T", "A6489C", "G6535A", "A6544G", "G6581A", "A6595G", "T6599A", "C6612T", "A6617G", "C6618T", "G6638C", "A6641T", "A6664G", "-6697G", "A6703-", "C6707T", "C6708G", "T6724C", "G6725A", "A6734G", "T6735A", "G6740A", "G6741T", "C6752A", "C6767A", "G6773A", "G6774A", "A6787C", "C6810A", "A6811C", "G6818A", "G6819A", "A6833-", "A6834-", "T6835-", "C6849T", "C6850T", "C6876T", "T6895G", "T6943C", 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"C8293T", "T8337A", "G8342A", "G8365A", "G8372A", "G8373A", "G8374T", "G8382C", "G8402A", "T8411C", "G8412C", "A8413C", "G8414T", "G8432A", "T8451C", "A8458G", "T8471C", "A8474C", "G8490T", "C8494A", "T8495C", "C8503A", "C8504T", "A8528G", "C8546T", "T8582C", "G8589T", "T8594G", "C8609T", "A8643G", "C8646T", "A8647G", "C8648G", "G8666T", "C8676T", "G8717A", "G8739A", "A8762G", "T8789C", "A8795G", "C8796A", "A8801G", "G8807A", "A8812C", "C8832T", "A8844G", "G8848A", "C8849T", "A8851T", "T8864G", "G8875A", "T8887A", "G8888A", "C8904A", "G8905A", "C8906A", "A8909G", "G8912A", "A8922T", "A8954G", "G8955A", "C8971A", "T8972C"], "INT": ["E11D", "A21S", "V31I", "E48K", "L68V", "L74I", "A98G", "K111R", "T122I", "A124T", "T125A", "Q136K", "G163E", "V165I", "A205S", "K211R", "S230N", "V234I", "G283S"], "RT-p51": ["K101Q", "E123D", "I142T", "M184V", "G190A", "L228H", "V245M", "T286A", "M357T", "S379G", "K390R"], "RT-p66": ["K101Q", "E123D", "I142T", "M184V", "G190A", "L228H", "V245M", "T286A", "M357T", "S379G", "K390R", "S468P", "Q480H", "Q524H", "E529T", "I556V"], "gp120": ["A3-", "D29N", "V33Y", "N52D", "V56I", "V57P", "E59K", "N71D", "E78Q", "K89Q", "T104S", "N105D", "-107G", "S116D", "-117G", "-118R", "-123K", "V133I", "S136D", "I137L", "G138R", "M141K", "L147V", "V154T", "D157G", "T164R", "N167S", "I173L", "V180T", "L197I", "T208S", "K212T", "V243I", "F249I", "A253V", "T255V", "E262Q", "T263S", "I281M", "P285W", "A291T", "D294E", "G296I", "I298D", "Q300K", "L305I", "G307K", "T308A", "K311D", "T319N", "G322K", "N327-", "A332V", "P341L", "S347R", "-381E", "-382G", "-383N", "D384S", "T385N", "K393R", "S412K", "L425I", "N434A", "N435S", "V461I", "V468I"], "gp41": ["I4T", "M7V", "V24I", "N42S", "R46K", "L54M", "V72I", "E110Q", "M118R", "Q119E", "K122R", "I135L", "E137N", "Q151E", "S157N", "N166H", "V182I", "A189T", "V194I", "Q199K", "H209L", "P213A", "D232G", "D239H", "I244L", "I245A", "L254I", "R259L", "I266T", "I270T", "E272G", "A306T", "T307I", "V321A", "V322G", "I325V", "I329V", "L345Q"], "nef": ["S8N", "M10I", "G11I", "A14P", "M20I", "E24P", "K39R", "A50S", "T51N", "A83S", "V85L", "I101V", "H102W", "E108D", "V133I", "Q152K", "N157T", "M168V", "S169N", "Q170L", "D174E", "R178K", "M182K", "R188K", "M194L", "D205N"], "p17": ["K30Q", "I34V", "Q59K", "G62E", "K113S", "A115-"], "p2": ["Q6H", "T12-", "V13I", "M14L"], "p24": ["S16A", "T58S", "L83V", "C177A", "G183N"], "p6": ["G16R", "Q30E", "D32N", "Q52K"], "p7": ["I12V"], "pro": ["T12E", "I15V", "D60E"], "rev": ["K14G", "S31R", "H53N", "R57T", "N62T", "H63R", "A68E", "P72H", "D86N", "T94P", "S106P", "A108T"], "tat": ["A21P", "T23N", "K24N", "K29R", "V36K", "P58S", "Q60R", "D61H", "Q63P", "T64A", "S68P", "T74S"], "vif": ["M29I", "K36R", "R37K", "F39L", "F44Y", "S46N", "R50K", "T67I", "H73Q", "K91Q", "I98V", "I109S", "Y110H", "D113N", "P131S", "N140T", "I154L", "K157R", "R167K", "G182D"], "vpr": ["P10S", "T19A", "P37V", "G41S", "A55T", "I60L", "A89P"], "vpu": ["Q2L", "S3P", "L7V", "A11S", "L27F", "Y30F", "K38R", "I42L", "E48D", "D60E", "Q61L", "E62S", "E63A", "L65V", "-66G", "-67M", "-68G", "M71-", "G72-", "D74L"]}, "labels": {"aa": "INT: E11D, A21S, V31I, E48K, L68V, L74I, A98G, K111R, T122I, A124T, T125A, Q136K, G163E, V165I, A205S, K211R, S230N, V234I, G283S; RT-p51: K101Q, E123D, I142T, M184V, G190A, L228H, V245M, T286A, M357T, S379G, K390R; RT-p66: K101Q, E123D, I142T, M184V, G190A, L228H, V245M, T286A, M357T, S379G, K390R, S468P, Q480H, Q524H, E529T, I556V; gp120: A3-, D29N, V33Y, N52D, V56I, V57P, E59K, N71D, E78Q, K89Q, T104S, N105D, -107G, S116D, -117G, -118R, -123K, V133I, S136D, I137L, G138R, M141K, L147V, V154T, D157G, T164R, N167S, I173L, V180T, L197I, T208S, K212T, V243I, F249I, A253V, T255V, E262Q, T263S, I281M, P285W, A291T, D294E, G296I, I298D, Q300K, L305I, G307K, T308A, K311D, T319N, G322K, N327-, A332V, P341L, S347R, -381E, -382G, -383N, D384S, T385N, K393R, S412K, L425I, N434A, N435S, V461I, V468I; gp41: I4T, M7V, V24I, N42S, R46K, L54M, V72I, E110Q, M118R, Q119E, K122R, I135L, E137N, Q151E, S157N, N166H, V182I, A189T, V194I, Q199K, H209L, P213A, D232G, D239H, I244L, I245A, L254I, R259L, I266T, I270T, E272G, A306T, T307I, V321A, V322G, I325V, I329V, L345Q; nef: S8N, M10I, G11I, A14P, M20I, E24P, K39R, A50S, T51N, A83S, V85L, I101V, H102W, E108D, V133I, Q152K, N157T, M168V, S169N, Q170L, D174E, R178K, M182K, R188K, M194L, D205N; p17: K30Q, I34V, Q59K, G62E, K113S, A115-; p2: Q6H, T12-, V13I, M14L; p24: S16A, T58S, L83V, C177A, G183N; p6: G16R, Q30E, D32N, Q52K; p7: I12V; pro: T12E, I15V, D60E; rev: K14G, S31R, H53N, R57T, N62T, H63R, A68E, P72H, D86N, T94P, S106P, A108T; tat: A21P, T23N, K24N, K29R, V36K, P58S, Q60R, D61H, Q63P, T64A, S68P, T74S; vif: M29I, K36R, R37K, F39L, F44Y, S46N, R50K, T67I, H73Q, K91Q, I98V, I109S, Y110H, D113N, P131S, N140T, I154L, K157R, R167K, G182D; vpr: P10S, T19A, P37V, G41S, A55T, I60L, A89P; vpu: Q2L, S3P, L7V, A11S, L27F, Y30F, K38R, I42L, E48D, D60E, Q61L, E62S, E63A, L65V, -66G, -67M, -68G, M71-, G72-, D74L"}}}, {"name": "CRF29_BF1_NODE_0000002", "node_attrs": {"div": 0.16111999999999999, "clade_membership": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A706G", "C771G", "G1192A", "G1498A", "C1656A", "A1781G", "C1782A", "G2027A", "T2499C", "G2902A", "A2937G", "G2972A", "A3154G", "G3221A", "C3266T", "C3355T", "T3358C", "C3359T", "A3364G", "C3368T", "T3431G", "A3439G", "C3445T", "C3475T", "T3940C", "G3952A", "T3962C", "A4354G", "G4549A", "A4677G", "A4782G", "G4799T", "T4820C", "C4827T", "G4856A", "C4857A", "G4892A", "G4904A", "C4907T", "A4913G", "C5062G", "T5788C", "T5789A", "T5791G", "-5792A", "C5795A", "C5797T", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "T5826C", "C6010T", "C6189A", "G6605A", "A6695C", "C6807T", "A6840C", "C6843A", "T6932A", "T6958-", "-6964G", "-6974A", "-6998A", "-7000T", "-7002G", "A7161G", "A7666G", "T7715G", "G7753A", "G7929A", "C7939T", "A8104G", "A8364C", "C8948T"], "RT-p51": ["I135T", "K281R", "V293I", "A376T"], "RT-p66": ["I135T", "K281R", "V293I", "A376T", "S446A"], "gp120": ["-117N", "A191T", "D251N", "I281L", "A318V", "S360T", "-374T", "E436G"], "gp41": ["S138A", "N166K"], "nef": ["S8R"], "p1": ["H9N"], "p17": ["N124S"], "p24": ["P14A", "R154K"], "p6": ["L35K"], "p7": ["R11K"], "pro": ["V77I"], "rev": ["D11E"], "tat": ["P58T", "P77L"], "vif": ["I31V", "I66V", "I109L", "T159R"], "vpu": ["-69V", "-70E"]}, "labels": {"aa": "RT-p51: I135T, K281R, V293I, A376T; RT-p66: I135T, K281R, V293I, A376T, S446A; gp120: -117N, A191T, D251N, I281L, A318V, S360T, -374T, E436G; gp41: S138A, N166K; nef: S8R; p1: H9N; p17: N124S; p24: P14A, R154K; p6: L35K; p7: R11K; pro: V77I; rev: D11E; tat: P58T, P77L; vif: I31V, I66V, I109L, T159R; vpu: -69V, -70E"}}, "children": [{"name": "DQ085871", "node_attrs": {"div": 0.20273999999999998, "accession": "DQ085871", "clade_membership": {"value": "CRF29_BF1"}, "country": {"value": "BR"}, "date": {"value": 1999.0}, "Strain_name": {"value": "BREPM11948"}, "LANL_subtype": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C151T", "C160T", "A161C", "T200G", "T201C", "-305A", "G318A", "G325A", "T341C", "G344A", "G350T", "G354T", "G369A", "A374G", "A425T", "A433T", "G455A", "A461G", "C467T", "T473C", "A485G", "G508A", "A557G", "G599A", "G696A", "G697A", "C707T", "G716A", "G743A", "C746T", "C749T", "T782G", "T852A", "T858C", "T978G", "A1007G", "G1016A", "T1046G", "A1115C", "G1173A", "T1174C", "G1277A", "A1327G", "A1349G", "G1356T", "C1362T", "T1403G", "C1406T", "G1419A", "A1449G", "A1450G", "A1452G", "G1461A", "T1511C", "A1543G", "A1580G", "T1653C", "C1670T", "C1692A", "T1741C", "G1794A", "C1826A", "T1873C", "C1985T", "T1986G", "T1997G", "G1998A", "A2018T", "G2023A", "G2026A", "T2062C", "T2080C", "T2083C", "A2089G", "A2197G", "A2305G", "G2341A", "G2422A", "A2459G", "T2485C", "G2518A", "C2626T", "G2686A", "A2699G", "A2716G", "T2770C", "A2839C", "G2869A", "T2905A", "C2908T", "A2925G", "T2930C", "G2956A", "G2957T", "C2978T", "G2995A", "T3045C", "A3096T", "A3136G", "G3188A", "C3225T", "A3226G", "A3247T", "G3250A", "C3271T", "T3328C", "C3399T", "C3412T", "T3424C", "A3449T", "A3450T", "A3481G", "G3483A", "C3496A", "A3574G", "A3676C", "T3820C", "C3857A", "G3859A", "G3869A", "T3904C", "A3961G", "T4005C", "T4117C", "G4150A", "T4234A", "G4267A", "A4273G", "G4394A", "A4408C", "T4412C", "A4455T", "G4495A", "T4701G", "T4703C", "A4721G", "C4728A", "A4737G", "A4763G", "G4766A", "C4771A", "T4826C", "G4865T", "G4888A", "A4964C", "G4988T", "C5006T", "A5015G", "A5033T", "A5090G", "G5099A", "G5140A", "C5149T", "A5173G", "A5191G", "T5203C", "G5225A", "G5257T", "A5272G", "C5281T", "A5284C", "T5333C", "A5366G", "C5445A", "A5461C", "A5462G", "G5463A", "T5487C", "C5559T", "C5576A", "T5577A", "T5578C", "T5584C", "G5589C", "A5594G", "A5613G", "T5626G", "T5627C", "A5646T", "T5651C", "T5688A", "G5699A", "A5738C", "A5746G", "G5747T", "C5778T", "A5784G", "C5787T", "-5799G", "T5801C", "G5802A", "-5804G", "-5805G", "-5806C", "-5807T", "-5808T", "A5845G", "G5856A", "C5862A", "A5866G", "G5896A", "A5915C", "C5916A", "C5917G", "A6009G", "G6016A", "G6020A", "G6028A", "T6109C", "C6115T", "A6132G", "C6145T", "T6154C", "A6173G", "G6179A", "A6180G", "A6186C", "A6192G", "G6201A", "-6203G", "-6204G", "-6205G", "G6207T", "A6215-", "G6218-", "-6221A", "A6229T", "T6242A", "C6253T", "G6261T", "T6264G", "G6266A", "G6277A", "C6278G", "G6284C", "T6299G", "G6311A", "A6320G", "T6325A", "A6333C", "A6335G", "C6336A", "A6346G", "T6433C", "T6445C", "A6464C", "A6500T", "T6541A", "G6547A", "G6577T", "G6578A", "C6632T", "T6637C", "G6647C", "A6648G", "C6673T", "A6684G", "A6691G", "G6709A", "T6721A", "A6723T", "G6732A", "A6733T", "A6775G", "C6777A", "A6779G", "A6781T", "G6802A", "-6830G", "-6831G", "-6832A", "A6837T", "G6848A", "A6858G", "T6925C", "A6927G", "A6959G", "-6961G", "-6963G", "-6968G", "G6970T", "-6971A", "-6972C", "-6973C", "-6975C", "-6976C", "A6978C", "-6979T", "-6980T", "-6982G", "-6983A", "-6984A", "A6990T", "C6991T", "C6993A", "A6996G", "-6997G", "-6999G", "-7001G", "-7005A", "-7006G", "G7055C", "A7090T", "C7094A", "G7101A", "A7102T", "A7149G", "C7150A", "G7155A", "A7158C", "C7159A", "G7162A", "C7174T", "A7238C", "G7256A", "G7307T", "A7373G", "A7376G", "T7462C", "G7524A", "A7525G", "G7604A", "T7626A", "T7642C", "A7713G", "A7721T", "A7782G", "C7801A", "G7831A", "G7847A", "C7874T", "T7932A", "A7986G", "G7987C", "C8051A", "C8065T", "G8070T", "C8080A", "C8106T", "G8107A", "T8112C", "C8120A", "G8130A", "G8144A", "C8145T", "A8152G", "T8218C", "C8221A", "G8267A", "T8277C", "T8290C", "C8296T", "G8342A", "A8370C", "C8386A", "A8426G", "G8490A", "C8491G", "G8531T", "T8545A", "T8551A", "G8554A", "C8559G", "G8561C", "T8568G", "T8595G", "C8601A", "T8602A", "T8603G", "G8654A", "A8657G", "G8682A", "C8684A", "A8701G", "G8717A", "G8738A", "T8789C", "A8792C", "G8793T", "A8794C", "C8796G", "G8798A", "G8822A", "T8829A", "T8835C", "C8868T", "G8875A", "G8936A"], "INT": ["L28I", "V32I", "V77A", "T125A", "D207N", "K211N", "Y227F"], "RT-p51": ["K122E", "I202V", "E248D", "K277R", "A288S", "V317A", "Q334L", "V365I", "T377M", "A435V"], "RT-p66": ["K122E", "I202V", "E248D", "K277R", "A288S", "V317A", "Q334L", "V365I", "T377M", "A435V", "K452L", "R463K", "K527N"], "gp120": ["S1N", "A3E", "T21Q", "N52S", "V56I", "K93R", "-107D", "N109T", "-118G", "E122-", "-123K", "E125D", "S130T", "S136I", "I137R", "G138R", "M141I", "Q142E", "E144Q", "Y149D", "V153I", "I156V", "D157E", "N160T", "T161E", "V180I", "K204Q", "T216S", "E241D", "V242I", "E265R", "K277R", "I279M", "Y290H", "G293D", "D294I", "T308E", "K309D", "K311E", "-326G", "N328I", "K329T", "T330K", "A332T", "Q335R", "N358S", "N368E", "N369R", "S370N", "T371G", "-372T", "-373T", "-375W", "-376K", "-377N", "-378I", "-379N", "-380G", "-381S", "-382G", "-383T", "D384N", "E401Q", "Q414K", "R416N", "N432R", "N435T", "K462Q", "V468I"], "gp41": ["V2L", "T25A", "R74K", "A101T", "L108Q", "E137G", "N140Y", "N160S", "K172R", "M176I", "V182I", "L191F", "L210H", "E228G", "S256I", "T268I", "I270T", "L273I", "R276H", "A281I", "V322I", "I325T", "G326C"], "nef": ["M10L", "A15D", "A50S", "D54A", "E63D", "F68Y", "V70D", "R71K", "Q73D", "L76V", "L87K", "V114I", "Y120C", "E151S", "Q152E", "C163S", "P176S", "R178K"], "p1": ["S8P"], "p17": ["V7L", "E12K", "K30N", "H33L", "R58K", "E102D", "G121N"], "p2": ["N9G", "T10A", "T12-", "V13I"], "p24": ["I6L", "S41T", "L83V", "E128D", "V148T", "K199R", "A209S", "V230I"], "p6": ["P5T", "I21T", "A39T"], "p7": ["K26R"], "pro": ["L10I", "L63C", "C67D", "T74S"], "rev": ["T15I", "L21N", "S25T", "E47Q", "A68E", "L73F", "Q74H", "L78I", "E87K", "T91N", "S99N", "I102V"], "tat": ["K29R", "A67E", "S68P", "S70P", "K71N", "S75T"], "vif": ["F39V", "H48N", "I51V", "A62D", "R93S", "G101D", "E134D", "G185E", "T188I"], "vpr": ["G41S"], "vpu": ["L7A", "V15A", "R31K", "D44A", "R47V", "L65A", "-66G", "-67L", "N80D"]}, "labels": {"aa": "INT: L28I, V32I, V77A, T125A, D207N, K211N, Y227F; RT-p51: K122E, I202V, E248D, K277R, A288S, V317A, Q334L, V365I, T377M, A435V; RT-p66: K122E, I202V, E248D, K277R, A288S, V317A, Q334L, V365I, T377M, A435V, K452L, R463K, K527N; gp120: S1N, A3E, T21Q, N52S, V56I, K93R, -107D, N109T, -118G, E122-, -123K, E125D, S130T, S136I, I137R, G138R, M141I, Q142E, E144Q, Y149D, V153I, I156V, D157E, N160T, T161E, V180I, K204Q, T216S, E241D, V242I, E265R, K277R, I279M, Y290H, G293D, D294I, T308E, K309D, K311E, -326G, N328I, K329T, T330K, A332T, Q335R, N358S, N368E, N369R, S370N, T371G, -372T, -373T, -375W, -376K, -377N, -378I, -379N, -380G, -381S, -382G, -383T, D384N, E401Q, Q414K, R416N, N432R, N435T, K462Q, V468I; gp41: V2L, T25A, R74K, A101T, L108Q, E137G, N140Y, N160S, K172R, M176I, V182I, L191F, L210H, E228G, S256I, T268I, I270T, L273I, R276H, A281I, V322I, I325T, G326C; nef: M10L, A15D, A50S, D54A, E63D, F68Y, V70D, R71K, Q73D, L76V, L87K, V114I, Y120C, E151S, Q152E, C163S, P176S, R178K; p1: S8P; p17: V7L, E12K, K30N, H33L, R58K, E102D, G121N; p2: N9G, T10A, T12-, V13I; p24: I6L, S41T, L83V, E128D, V148T, K199R, A209S, V230I; p6: P5T, I21T, A39T; p7: K26R; pro: L10I, L63C, C67D, T74S; rev: T15I, L21N, S25T, E47Q, A68E, L73F, Q74H, L78I, E87K, T91N, S99N, I102V; tat: K29R, A67E, S68P, S70P, K71N, S75T; vif: F39V, H48N, I51V, A62D, R93S, G101D, E134D, G185E, T188I; vpr: G41S; vpu: L7A, V15A, R31K, D44A, R47V, L65A, -66G, -67L, N80D"}}}, {"name": "JF804814", "node_attrs": {"div": 0.20675, "accession": "JF804814", "clade_membership": {"value": "CRF29_BF1"}, "country": {"value": "BR"}, "date": {"value": 2005.0}, "Strain_name": {"value": "0744SV"}, "LANL_subtype": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A423G", "A424T", "A437T", "A464C", "C516A", "G542A", "A562G", "A563T", "T571A", "G612A", "G615A", "A617T", "A618C", "A638T", "C641G", "A670G", "G687A", "A699G", "A704G", "T718C", "C747A", "A797T", "G810A", "C875T", "A887G", "C1004T", "C1005G", "A1089G", "T1181C", "C1244T", "A1259T", "T1260G", "G1261T", "T1262A", "A1263C", "C1264A", "A1265C", "C1266A", "A1267G", "G1269A", "A1274G", "C1304T", "G1355A", "A1361T", "A1433G", "C1444-", "A1445-", "A1446-", "G1455A", "A1528C", "A1589G", "A1620G", "G1691A", "C1721T", "T1754C", "C1767A", "A1839G", "A1841G", "G1848A", "A1849G", "A1867G", "C1987T", "T2080A", "G2230A", "A2241G", "T2393C", "A2402G", "G2411A", "A2416G", "C2452T", "A2464G", "T2527C", "A2579T", "T2620C", "T2638C", "G2656A", "A2693G", "G2704A", "G2722A", "G2926A", "A2951G", "C3100T", "T3118A", "T3121C", "T3165C", "G3169A", "T3172A", "C3223T", "G3259A", "A3280G", "T3292A", "A3293G", "A3302G", "C3303T", "A3334G", "C3387A", "G3391A", "C3399A", "C3412A", "C3415T", "A3490G", "C3492T", "C3496T", "T3497C", "T3505G", "G3508C", "C3511A", "G3523A", "G3524A", "C3542T", "G3544T", "T3545C", "T3551C", "A3553G", "C3567T", "A3571G", "G3595A", "T3613C", "A3651G", "A3667G", "A3675G", "G3685A", "C3691T", "T3695G", "G3718A", "G3737A", "G3755A", "A3766G", "A3770G", "G3775A", "G3787A", "A3794C", "A3799C", "G3802A", "A3813G", "A3825G", "C3826T", "G3836T", "A3845G", "T3856C", "A3868G", "T3889C", "G3901A", "G3916A", "T3968G", "G3969T", "T3976C", "G3989A", "C4006T", "T4015C", "G4021A", "C4024T", "C4025A", "C4042T", "A4051G", "A4057G", "A4063G", "C4069A", "C4075T", "A4076C", "A4078C", "C4079T", "C4130A", "C4131G", "C4147T", "G4148A", "A4159T", "T4177G", "C4181A", "C4195T", "A4243G", "G4294A", "A4303G", "A4376G", "A4384C", "A4433C", "C4471T", "G4475C", "A4498G", "C4525A", "A4526G", "C4534T", "A4543C", "A4555G", "C4667T", "A4694C", "T4702G", "G4726A", "A4727T", "A4765G", "A4769T", "A4784G", "C4786T", "A4790T", "G4835A", "G4860A", "G4865A", "T4910C", "G4953A", "A4956C", "A5042C", "T5072C", "C5102T", "C5111A", "A5112C", "A5128T", "A5159G", "T5182C", "T5239C", "C5242T", "G5257A", "G5305T", "T5309C", "T5311C", "A5335G", "A5355T", "T5356A", "G5359T", "A5375G", "T5415C", "A5421G", "T5430C", "A5433G", "C5444A", "T5492C", "A5558G", "C5567G", "T5568C", "C5581T", "G5653A", "C5679T", "A5720G", "G5721A", "G5729A", "G5730A", "A5734C", "G5737A", "T5739C", "A5748G", "A5781T", "-5799A", "G5800C", "G5803-", "C5851T", "A5915T", "C5964T", "C5998T", "C6004T", "T6046C", "A6112G", "T6170G", "T6175G", "T6178C", "A6180C", "T6184C", "A6194G", "G6195A", "G6198C", "-6203A", "-6204A", "-6205T", "A6206T", "-6208G", "-6209A", "-6210A", "-6211A", "-6212A", "-6213A", "-6214T", "-6216T", "-6217G", "-6219A", "G6220-", "A6222-", "G6223A", "G6232A", "A6237G", "A6248G", "C6262A", "G6269A", "A6275T", "A6320T", "G6323A", "A6333G", "C6347T", "A6379G", "A6392G", "G6430A", "C6482T", "C6483T", "G6577A", "G6631A", "C6632A", "A6669G", "A6679C", "C6707T", "C6708G", "A6727T", "C6758T", "A6765C", "G6771A", "G6776A", "G6785A", "C6790G", "T6793A", "A6797G", "G6802C", "A6809G", "T6835C", "A6837G", "T6895C", "T6928C", "A6935C", "G6937A", "-6961T", "-6963A", "-6968A", "G6969A", "-6971G", "-6972A", "-6973T", "-6975A", "-6976T", "-6979C", "-6980A", "-6982T", "-6983T", "-6984G", "A6985G", "A6989G", "A6990G", "C6991G", "C6993G", "-6997T", "-6999T", "-7001A", "G7004A", "-7005C", "-7006T", "C7008A", "C7020T", "A7021G", "T7047G", "G7054A", "A7095C", "A7100G", "A7102C", "C7107T", "T7114A", "G7126A", "T7144G", "A7152C", "C7153G", "A7163T", "C7171T", "G7190A", "G7232A", "A7255G", "A7269G", "G7369A", "G7375A", "G7390A", "C7463A", "G7517A", "A7532C", "T7609C", "A7632T", "A7633T", "A7747C", "A7763G", "A7764C", "G7765A", "G7790A", "A7791G", "C7801G", "G7818A", "A7849G", "T7853C", "A7855T", "A7880G", "C7941A", "T7968C", "C7969A", "A7974G", "G8001C", "G8018A", "G8079A", "T8103C", "A8111G", "G8254A", "G8267T", "T8279G", "A8367G", "C8383A", "T8384G", "C8406A", "A8425T", "A8426T", "T8440C", "A8458G", "C8460T", "T8495C", "C8503A", "C8510A", "T8511C", "G8512A", "G8517C", "G8531A", "G8588A", "C8590G", "A8597T", "C8607T", "A8608T", "A8636T", "T8711C", "G8814A", "A8844C", "G8858A", "G8905A", "T8913C", "T8914G", "T8915C", "T8918G", "A8947T", "T8966C", "C8967T", "A9061T", "G9063C"], "INT": ["K7Q", "E13G", "N17S", "A21S", "S24G", "C65V", "V72I", "L84I", "I101L", "P119S", "Q136K", "I201V", "I220L", "V234L", "I251V", "E256D"], "RT-p51": ["K49R", "K103E", "V106I", "S162C", "T200A", "T286A", "M357T", "D399E", "T400A", "T403V", "T431K", "A435E"], "RT-p66": ["K49R", "K103E", "V106I", "S162C", "T200A", "T286A", "M357T", "D399E", "T400A", "T403V", "T431K", "A435E", "A466V", "S468P", "E471D", "A477T", "Q483Y", "S491L", "N519S", "K527R", "S534A", "V548I", "A554T", "I559V"], "gp120": ["T21S", "A37V", "L106V", "-107N", "N109A", "T112N", "S114D", "S115T", "-118W", "M119K", "-120N", "-121M", "M126I", "N128S", "N132D", "S136R", "D139N", "M141L", "I156L", "D157N", "N160S", "P210L", "L260M", "N272S", "P285W", "H302Y", "N304T", "S306N", "N312K", "K315E", "Q316H", "T319A", "-326N", "N327S", "N328T", "T330-", "K361Q", "N369K", "T371D", "-372I", "-373S", "-375N", "D384-", "T385-", "P389L", "M398R", "S412R", "Q414P", "R416G", "S418L", "N420K", "N433T", "N434S", "T437S", "D446N", "V460I", "K472R"], "gp41": ["I4T", "V24I", "L54M", "V72I", "K77Q", "E110V", "E148D", "K154A", "D163S", "I193V", "P213Q", "I222T", "E224G", "R233T", "D239N", "R259H", "V267A", "I270V", "V322L"], "nef": ["S9G", "A14E", "E28V", "V33A", "K39R", "H40Y", "W57Q", "E59Q", "A83G", "V85F", "H89F", "E98D", "E158K", "M168L", "R188H", "F191R", "H192Q", "Y202F"], "p17": ["K30V", "L61I", "K76S", "F79Y", "D93N", "V94I", "K95Q", "L101F", "K112R", "A118T", "T122A", "V128A"], "p2": ["T8N", "N9T", "T10-", "A11-"], "p24": ["V27I", "P92A", "S120G", "Q176H", "C177V", "T178H", "Q179R", "E180K"], "p6": ["Q30K"], "p7": ["E21A", "R52G"], "pro": ["I15V", "G17E"], "rev": ["T15A", "L18A", "Q51H", "R57K", "D88G"], "tat": ["T23N", "I39T", "D61G", "T64S", "S87Q"], "vif": ["K36N", "F39C", "R47N", "E60G", "E61D", "T67I", "G92R", "A123T", "I124L", "N175K", "K176Q", "K181M"], "vpr": ["Q3T", "Q8H", "T19A", "F69L", "Q77R", "I84Y", "R85L"], "vpu": ["A16T", "L27F", "K38R", "R41K", "I43L", "D44N", "E58D"]}, "labels": {"aa": "INT: K7Q, E13G, N17S, A21S, S24G, C65V, V72I, L84I, I101L, P119S, Q136K, I201V, I220L, V234L, I251V, E256D; RT-p51: K49R, K103E, V106I, S162C, T200A, T286A, M357T, D399E, T400A, T403V, T431K, A435E; RT-p66: K49R, K103E, V106I, S162C, T200A, T286A, M357T, D399E, T400A, T403V, T431K, A435E, A466V, S468P, E471D, A477T, Q483Y, S491L, N519S, K527R, S534A, V548I, A554T, I559V; gp120: T21S, A37V, L106V, -107N, N109A, T112N, S114D, S115T, -118W, M119K, -120N, -121M, M126I, N128S, N132D, S136R, D139N, M141L, I156L, D157N, N160S, P210L, L260M, N272S, P285W, H302Y, N304T, S306N, N312K, K315E, Q316H, T319A, -326N, N327S, N328T, T330-, K361Q, N369K, T371D, -372I, -373S, -375N, D384-, T385-, P389L, M398R, S412R, Q414P, R416G, S418L, N420K, N433T, N434S, T437S, D446N, V460I, K472R; gp41: I4T, V24I, L54M, V72I, K77Q, E110V, E148D, K154A, D163S, I193V, P213Q, I222T, E224G, R233T, D239N, R259H, V267A, I270V, V322L; nef: S9G, A14E, E28V, V33A, K39R, H40Y, W57Q, E59Q, A83G, V85F, H89F, E98D, E158K, M168L, R188H, F191R, H192Q, Y202F; p17: K30V, L61I, K76S, F79Y, D93N, V94I, K95Q, L101F, K112R, A118T, T122A, V128A; p2: T8N, N9T, T10-, A11-; p24: V27I, P92A, S120G, Q176H, C177V, T178H, Q179R, E180K; p6: Q30K; p7: E21A, R52G; pro: I15V, G17E; rev: T15A, L18A, Q51H, R57K, D88G; tat: T23N, I39T, D61G, T64S, S87Q; vif: K36N, F39C, R47N, E60G, E61D, T67I, G92R, A123T, I124L, N175K, K176Q, K181M; vpr: Q3T, Q8H, T19A, F69L, Q77R, I84Y, R85L; vpu: A16T, L27F, K38R, R41K, I43L, D44N, E58D"}}}]}]}, {"name": "CRF29_BF1_NODE_0000003", "node_attrs": {"div": 0.15095999999999998, "clade_membership": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "DQ085876", "node_attrs": {"div": 0.18578999999999998, "accession": "DQ085876", "clade_membership": {"value": "CRF29_BF1"}, "country": {"value": "BR"}, "date": {"value": 2001.0}, "Strain_name": {"value": "BREPM16704"}, "LANL_subtype": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A203T", "A204G", "A214T", "A220T", "G275C", "G282C", "G285C", "T288C", "-305A", "G413T", "T426C", "A461G", "G519T", "G520C", "A607G", "G615A", "C641A", "A673C", "T728C", "C749A", "G810A", "C875T", "T1001G", "C1013T", "T1253A", "T1322C", "T1325C", "A1418G", "G1455A", "A1543G", "C1610A", "A1701T", "C1724A", "C1730T", "G1736A", "T1741G", "A1781G", "C1782A", "A1804G", "A1841G", "A1951G", "A1979G", "T2116A", "A2164G", "G2198A", "A2200G", "G2343A", "A2371G", "T2393C", "A2498G", "C2503T", "A2623G", "G2682A", "C2684A", "A2755G", "G2887A", "C2909G", "G2914A", "C2953T", "A3001G", "C3023A", "T3059G", "C3095A", "A3097T", "G3173A", "G3221A", "A3238G", "T3292G", "G3340A", "A3382G", "G3391A", "C3399A", "C3475T", "A3481G", "A3547G", "T3550C", "A3562G", "T3644C", "A3670G", "A3676C", "G3679A", "G3685A", "T3904C", "C3908G", "G3916A", "T3967C", "C4130A", "G4148A", "G4150A", "A4196G", "T4207C", "A4246G", "T4247C", "A4255G", "G4279A", "C4318T", "C4381T", "A4384C", "C4428T", "A4661G", "A4737G", "C4754T", "C4771A", "A4773G", "T4793C", "G4829A", "C4857A", "G4864A", "T4914A", "T4952A", "G4971A", "A5033G", "A5037G", "A5042G", "A5059G", "C5062T", "C5102T", "A5119G", "C5213A", "C5214T", "A5215T", "A5230G", "T5237C", "T5260C", "A5335G", "T5356A", "G5359C", "T5415C", "A5421G", "A5432G", "C5444A", "T5487C", "C5514A", "C5552A", "C5569G", "G5599C", "A5601C", "A5613G", "T5626A", "G5700A", "A5720G", "G5737A", "-5792T", "-5793G", "-5799C", "G5803-", "G5861A", "A5866G", "C5884A", "T5887C", "A5915T", "T6007C", "G6020T", "A6065G", "C6110G", "T6160G", "C6165T", "T6170C", "T6175G", "A6182G", "A6186C", "T6193G", "G6198A", "-6208T", "-6209T", "-6210G", "-6211G", "-6212A", "-6213T", "-6214A", "-6216A", "-6217T", "-6219A", "-6221G", "A6229G", "C6253T", "T6264G", "G6266A", "G6267A", "C6278A", "G6280A", "A6292G", "T6299C", "A6303C", "G6311A", "C6317T", "T6321C", "A6324G", "T6325G", "A6326G", "T6328A", "C6345T", "A6354C", "G6451A", "T6454C", "C6482A", "T6551C", "G6577C", "G6578A", "G6588A", "C6601T", "A6628G", "G6631A", "T6637C", "G6644A", "G6709A", "A6728G", "A6734G", "T6735A", "G6743A", "T6745G", "A6765G", "G6774A", "G6776T", "G6785A", "A6789G", "C6790G", "A6797G", "A6826G", "-6830A", "-6831A", "-6832A", "A6834T", "T6835C", "A6839G", "A6854G", "T6860C", "T6863C", "T6901C", "A6935C", "A6936G", "A6950G", "C6951T", "-6956A", "-6957A", "-6961C", "-6963C", "-6964T", "A6965T", "-6968T", "A6977G", "-6979G", "-6980C", "G6981A", "-6982G", "-6983G", "-6984A", "G6995A", "A6996G", "-6997A", "-6998A", "-6999A", "-7000T", "-7001G", "-7002G", "-7005A", "-7006T", "T7009C", "T7039C", "A7053T", "A7056C", "T7071C", "A7074C", "G7076C", "A7088C", "T7099A", "A7113C", "T7114A", "T7117C", "G7121C", "G7122T", "G7126A", "T7131C", "G7137A", "A7138T", "A7152C", "G7155C", "C7156T", "G7160A", "A7161G", "C7164A", "G7198A", "A7239G", "A7240G", "G7291A", "A7373G", "A7376G", "G7390A", "G7405A", "A7441G", "A7519G", "A7525C", "A7533G", "G7552A", "T7561A", "C7579T", "A7589G", "T7622A", "C7623G", "T7626A", "G7628A", "A7629G", "A7633G", "C7658G", "A7668G", "A7677G", "T7682C", "G7688C", "A7693C", "A7700T", "T7702A", "A7705G", "A7706C", "A7721C", "A7726G", "G7773A", "A7782G", "C7801A", "A7820C", "C7938T", "C7939T", "A7978C", "A7992G", "A7995G", "G8050A", "C8080A", "A8105G", "G8173A", "A8184T", "T8281G", "C8296T", "T8302C", "A8364T", "G8373A", "G8393A", "A8396G", "T8440C", "C8460T", "T8483C", "A8516G", "T8595A", "C8601A", "T8603A", "G8654A", "C8676T", "G8732A", "T8770A", "C8809A", "C8810G", "G8814A", "T8829A", "G8858A", "A8947T", "C8948T", "A8950T", "C8971T", "A9009-", "G9010-", "C9017T", "C9067T"], "INT": ["L45V", "P119T", "I141V", "T218I"], "RT-p51": ["V35M", "R83K", "I135V", "G196E", "Q197K", "P272A", "L310I", "S322A", "Q334N", "A360T", "A376T", "D399E", "A435E"], "RT-p66": ["V35M", "R83K", "I135V", "G196E", "Q197K", "P272A", "L310I", "S322A", "Q334N", "A360T", "A376T", "D399E", "A435E", "K527N"], "gp120": ["A3T", "T21S", "V56L", "N71D", "Q86E", "N102K", "T104I", "N109A", "T112L", "S114D", "S115A", "-117T", "-118Q", "M119A", "-120I", "-121N", "-123E", "I137R", "G138K", "Q142K", "Y149H", "K150T", "V153I", "P155S", "I156T", "D157G", "N158E", "T164I", "N167T", "V180I", "A191T", "P210T", "E241D", "V242I", "R245K", "V264I", "T292A", "D294E", "D297K", "N304S", "G307E", "T308S", "N312R", "K315E", "-326K", "N327I", "K329E", "N334D", "S336P", "S337P", "K361R", "T366V", "-368R", "-370N", "-372R", "-373N", "-374G", "-375T", "-376N", "-377S", "-378N", "-379N", "Q400L", "E401A", "M406T", "Y407S", "A408P", "S412R", "N420T", "G423L", "L426S", "R428N", "N432S", "E436R", "T437N", "K462R"], "gp41": ["T25A", "R74S", "K77R", "T96A", "L108Q", "D109S", "Q119E", "K122R", "D125G", "Y127H", "G129R", "L130F", "T133S", "I135L", "N140H", "S157N", "N160S", "N166K", "K172R", "I173L", "A212V", "E225D", "D230G", "K231R", "T268A", "Q294L", "G326W"], "nef": ["S8C", "G11S", "T23A", "V33A", "H40Y", "D54A", "V85I", "L87I", "F143Y", "E151D", "A156E", "E158K", "C163S", "Y202F", "Y203F"], "p17": ["K26N", "G62S", "K91R", "V94I", "K113T", "S126R"], "p2": ["A11-"], "p24": ["I6L", "V27I"], "p6": ["T8S", "F15L", "I21R", "L35K", "K42R"], "p7": ["K26R", "D48E"], "pro": ["I15V", "N61D"], "rev": ["D11E", "L13I", "A68T", "L78I", "D86S", "V109I"], "tat": ["K19R", "T23N", "P58T", "P59H", "H65D", "P77F"], "vif": ["I51V", "A62D", "K63E", "R93K", "Y110N", "N122K", "V129I", "T151A", "K158R", "T159I", "Q178R"], "vpr": ["P37I", "Y45H", "Q77R", "I84N", "R85P"], "vpu": ["L7I", "L27F", "K38R", "D44N", "Q61H", "E63A", "L65V", "M71-"]}, "labels": {"aa": "INT: L45V, P119T, I141V, T218I; RT-p51: V35M, R83K, I135V, G196E, Q197K, P272A, L310I, S322A, Q334N, A360T, A376T, D399E, A435E; RT-p66: V35M, R83K, I135V, G196E, Q197K, P272A, L310I, S322A, Q334N, A360T, A376T, D399E, A435E, K527N; gp120: A3T, T21S, V56L, N71D, Q86E, N102K, T104I, N109A, T112L, S114D, S115A, -117T, -118Q, M119A, -120I, -121N, -123E, I137R, G138K, Q142K, Y149H, K150T, V153I, P155S, I156T, D157G, N158E, T164I, N167T, V180I, A191T, P210T, E241D, V242I, R245K, V264I, T292A, D294E, D297K, N304S, G307E, T308S, N312R, K315E, -326K, N327I, K329E, N334D, S336P, S337P, K361R, T366V, -368R, -370N, -372R, -373N, -374G, -375T, -376N, -377S, -378N, -379N, Q400L, E401A, M406T, Y407S, A408P, S412R, N420T, G423L, L426S, R428N, N432S, E436R, T437N, K462R; gp41: T25A, R74S, K77R, T96A, L108Q, D109S, Q119E, K122R, D125G, Y127H, G129R, L130F, T133S, I135L, N140H, S157N, N160S, N166K, K172R, I173L, A212V, E225D, D230G, K231R, T268A, Q294L, G326W; nef: S8C, G11S, T23A, V33A, H40Y, D54A, V85I, L87I, F143Y, E151D, A156E, E158K, C163S, Y202F, Y203F; p17: K26N, G62S, K91R, V94I, K113T, S126R; p2: A11-; p24: I6L, V27I; p6: T8S, F15L, I21R, L35K, K42R; p7: K26R, D48E; pro: I15V, N61D; rev: D11E, L13I, A68T, L78I, D86S, V109I; tat: K19R, T23N, P58T, P59H, H65D, P77F; vif: I51V, A62D, K63E, R93K, Y110N, N122K, V129I, T151A, K158R, T159I, Q178R; vpr: P37I, Y45H, Q77R, I84N, R85P; vpu: L7I, L27F, K38R, D44N, Q61H, E63A, L65V, M71-"}}}, {"name": "CRF29_BF1_NODE_0000004", "node_attrs": {"div": 0.15799, "clade_membership": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C516A", "G1192A", "A1450G", "T2737C", "A3264G", "A3574G", "T4207C", "A4246G", "T4247C", "A4255G", "G4279A", "G4388T", "A4859G", "A4937C", "T4952A", "G4986A", "G4988C", "G5024A", "A5051T", "T5084C", "A5085C", "G5086A", "G5093A", "A5094G", "C5095T", "G5099A", "A5128G", "G5187A", "G5246A", "A5248C", "T5251C", "C5268A", "G5275T", "A5290G", "T5293A", "C5294T", "G5305A", "T5314C", "T5333C", "A5336T", "A5375G", "G5463A", "T5686C", "T5826C", "T5887C", "G6179A", "G6195A", "-6203G", "G6225A", "A6234C", "A6254-", "C6255-", "C6256-", "G6329A", "A6425G", "G6547A", "G6848A", "T6885A", "-6971A", "-6973T", "-6975A", "A6978C", "-6979T", "-6982G", "-6983A", "C7008A", "A7102T", "C7164A", "G7689A", "G7790A", "A7791G", "G8070T", "G8531A", "C8546T"], "INT": ["T125A", "A205S"], "RT-p51": ["K390R"], "RT-p66": ["K390R"], "gp120": ["G124-", "K127-", "T134-", "D159N", "P285-", "D294-", "N312K", "A332I", "Q335N", "V344E", "R416S", "T437N"], "gp41": ["A6V", "D163S", "S256L"], "nef": ["R19K"], "p2": ["N9G", "T12V", "V13-"], "p24": ["R154K"], "rev": ["Q74P"], "vif": ["K91Q", "E117D", "N122K", "E134N", "T155A", "R167Q", "T170V", "K181R"], "vpr": ["S28N", "E48N", "A55E", "Q77H"]}, "labels": {"aa": "INT: T125A, A205S; RT-p51: K390R; RT-p66: K390R; gp120: G124-, K127-, T134-, D159N, P285-, D294-, N312K, A332I, Q335N, V344E, R416S, T437N; gp41: A6V, D163S, S256L; nef: R19K; p2: N9G, T12V, V13-; p24: R154K; rev: Q74P; vif: K91Q, E117D, N122K, E134N, T155A, R167Q, T170V, K181R; vpr: S28N, E48N, A55E, Q77H"}}, "children": [{"name": "JF804807", "node_attrs": {"div": 0.19555999999999998, "accession": "JF804807", "clade_membership": {"value": "CRF29_BF1"}, "country": {"value": "BR"}, "date": {"value": 2005.0}, "Strain_name": {"value": "0264RI"}, "LANL_subtype": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["-305A", "A374G", "A380G", "A423C", "C503T", "G508A", "T539A", "G599A", "A605G", "G615A", "C641A", "T668C", "A675C", "G678A", "A706G", "T718C", "C747A", "G806A", "G818A", "T861G", "C875T", "C892T", "T897C", "T978A", "T979C", "A1007G", "T1046A", "A1050G", "C1051T", "A1115C", "G1126A", "A1208G", "C1244A", "A1259G", "T1262C", "T1325C", "T1409C", "A1449G", "A1452G", "A1485-", "A1486-", "G1487-", "G1488A", "G1489A", "C1490A", "A1492C", "A1500G", "A1586G", "A1592G", "A1595G", "C1680A", "G1697A", "A1715G", "A1759G", "C1761A", "T1785A", "C1787T", "T1790C", "C1833T", "G1845A", "C1853T", "A1920G", "T1975C", "C1981T", "A1982G", "C1987T", "T2013C", "A2014G", "A2038G", "T2041G", "G2068A", "A2128G", "C2281A", "G2294A", "C2301A", "A2304G", "C2326T", "A2404C", "G2417A", "A2459G", "A2464C", "T2597C", "C2626A", "A2645G", "G2702A", "C2720T", "C2749T", "A2750G", "A2751G", "T2788C", "A2808C", "G2887A", "C2909T", "A2932G", "A2937G", "G2947A", "C2978T", "C3013T", "A3028G", "C3038T", "G3088A", "G3127A", "T3165C", "C3223T", "A3238T", "C3266T", "A3274G", "A3276T", "A3316G", "G3340A", "A3454G", "A3583G", "T3602A", "A3611C", "C3649T", "A3766G", "G3796A", "G3802A", "A3835G", "G3935A", "A3973C", "A4066C", "A4107G", "T4224C", "A4249G", "G4252A", "C4258A", "G4262A", "G4263A", "A4338G", "A4403G", "C4404T", "A4695G", "T4701G", "C4728A", "C4757T", "G4770A", "C4771A", "A4956T", "A4970G", "G4971A", "C4977A", "A5036G", "A5049G", "A5057G", "G5075T", "T5083C", "G5131A", "T5147C", "A5155G", "G5199A", "T5203C", "T5263C", "A5269G", "C5281A", "C5306T", "G5344A", "G5365C", "G5396A", "A5397C", "A5418G", "C5445A", "A5460G", "C5495A", "C5549G", "C5559T", "A5574G", "T5584C", "A5594G", "G5599T", "C5602T", "T5616C", "G5717A", "A5742G", "G5747C", "C5778T", "A5781G", "T5788C", "T5789A", "T5791-", "G5794-", "C5795-", "A5796-", "C5797-", "T5798-", "T5801A", "-5804A", "-5805A", "-5806T", "-5807T", "-5808A", "-5809T", "-5810T", "-5811G", "-5812G", "-5813C", "-5814A", "-5815G", "-5816T", "-5817T", "-5818A", "-5819T", "-5820G", "A5846C", "T5852A", "G5858A", "A5926G", "A5935C", "A5947G", "G6002A", "C6010T", "A6092G", "A6130C", "C6163T", "G6172A", "A6180G", "A6188G", "-6204G", "-6205T", "-6208T", "-6209C", "-6210T", "-6211T", "-6212G", "-6213A", "-6214A", "A6215T", "-6216A", "-6217T", "G6218A", "-6219T", "-6221A", "C6241T", "G6269A", "G6314A", "A6316G", "A6329-", "A6330-", "T6331-", "A6332-", "A6333-", "T6334-", "A6346G", "T6393C", "A6456G", "C6483T", "A6484G", "A6489G", "A6532G", "T6541C", "A6544G", "G6605A", "T6637C", "C6667T", "A6668G", "A6674-", "A6675-", "T6676-", "A6682G", "T6688G", "A6695C", "C6707A", "C6708G", "C6717T", "T6738A", "A6751G", "C6752T", "A6754C", "T6763C", "C6767G", "G6774C", "C6777A", "G6785A", "A6787G", "C6790A", "A6797G", "G6818A", "A6833-", "A6834-", "T6835-", "C6849T", "C6857T", "A6858C", "T6888C", "G6889A", "T6958-", "A6959-", "A6960-", "A6962-", "T6967A", "-6968G", "-6972A", "-6974G", "-6976C", "-6980G", "-6984C", "A6990C", "C6991T", "A6996G", "-6997T", "T7003-", "G7004-", "A7033G", "A7040G", "G7089C", "T7141C", "T7150C", "A7151T", "C7153T", "G7155C", "C7159G", "G7162C", "C7165T", "C7174T", "G7182C", "A7240G", "C7320T", "A7322C", "A7373G", "A7376G", "T7411C", "G7459A", "G7484A", "A7487G", "G7501A", "A7531G", "A7532G", "A7533C", "A7540G", "A7549G", "T7555G", "T7561A", "A7589G", "T7618C", "G7628A", "G7688A", "A7696T", "A7832G", "A7880G", "C7906T", "G7918A", "C7921T", "C7931T", "G7987C", "C8005A", "A8006G", "T8008G", "A8017G", "G8050A", "C8063A", "A8069C", "G8079A", "A8104G", "A8152G", "T8155C", "A8163G", "T8176C", "C8189A", "G8255A", "A8276G", "T8277C", "T8279G", "G8280T", "C8286T", "A8367-", "A8370G", "T8371G", "G8372C", "G8373A", "G8374A", "A8409G", "A8425T", "A8426T", "T8451C", "C8480T", "T8483C", "G8490T", "C8504A", "C8593G", "C8609T", "C8646T", "A8716G", "C8720T", "G8784A", "G8805A", "C8828T", "G8834A", "T8835C", "G8875A", "T8883C", "C8904A", "T8923G", "C8934A", "T8935A", "A8947T", "A8950T", "A8954G", "G8955A", "T8966G", "A8980C", "C9017T", "G9117A"], "INT": ["V54I", "K111R", "V150A", "G163K", "K188R", "T210V"], "RT-p51": ["D67N", "T69N", "K70R", "K103N", "V108I", "K122E", "E123D", "D177E", "M184V", "E203K", "K219G", "K238T", "P272S", "K281R", "H315Y", "M357T", "I393M", "Q394L"], "RT-p66": ["D67N", "T69N", "K70R", "K103N", "V108I", "K122E", "E123D", "D177E", "M184V", "E203K", "K219G", "K238T", "P272S", "K281R", "H315Y", "M357T", "I393M", "Q394L", "L503I", "I506L"], "gp120": ["A2T", "D50N", "I80V", "N109I", "T112N", "S116L", "-117E", "-118Y", "E122-", "-123K", "-124E", "-127T", "D139N", "V154M", "N159-", "N160-", "V180T", "N201S", "P210L", "K212R", "D251N", "N272D", "N274-", "S278R", "I281L", "-282G", "-283R", "G286-", "A288V", "-294G", "Q300Y", "L305V", "G307A", "T308E", "K315E", "G322R", "N327-", "N335S", "M345T", "-368T", "N369-", "T371-", "-382G", "-383N", "I396V", "S412T", "N433Y", "N434T", "N435K", "E436D", "G443A"], "gp41": ["I4T", "M7L", "T25A", "G61S", "I62V", "K77A", "I84M", "T96A", "D109N", "G129N", "K172R", "I177V", "I193V", "L210F", "E228D", "I235V", "L254I", "R259H", "N287S", "L296I", "V318I", "I325A", "G326V", "A328V"], "nef": ["S9-"], "p17": ["K30Q", "R58K", "L61I", "V94I", "K114Q", "A115T", "N124S", "V128A"], "p2": ["T10A"], "p24": ["S44A", "T54I", "L83T", "T107V", "E128D", "R132K"], "p6": ["L1I", "-26R", "E29K", "Q30D", "K31E", "D32G", "E33Q", "G34N", "Q52*"], "p7": ["G8P", "Q9R", "R11V", "I12-"], "pro": ["T12I", "G16E", "K41R", "I62V", "I72T"], "rev": ["D11E", "L12V", "T15I", "K20R", "P28L", "S31P", "E47Q", "H53S", "S54A", "R57G", "A68T", "P72H", "I102V", "T114N"], "tat": ["R7N", "T40K", "P58S", "S70P"], "vif": ["R37G", "F39V", "H48N", "A62N", "I124L", "V129I", "P131T", "L163F", "V166A", "G182D", "N190S"], "vpr": ["Y15H", "R32K", "R80K", "R87T"], "vpu": ["R37K", "R47T", "-66A", "-67V", "N80T", "L82Q"]}, "labels": {"aa": "INT: V54I, K111R, V150A, G163K, K188R, T210V; RT-p51: D67N, T69N, K70R, K103N, V108I, K122E, E123D, D177E, M184V, E203K, K219G, K238T, P272S, K281R, H315Y, M357T, I393M, Q394L; RT-p66: D67N, T69N, K70R, K103N, V108I, K122E, E123D, D177E, M184V, E203K, K219G, K238T, P272S, K281R, H315Y, M357T, I393M, Q394L, L503I, I506L; gp120: A2T, D50N, I80V, N109I, T112N, S116L, -117E, -118Y, E122-, -123K, -124E, -127T, D139N, V154M, N159-, N160-, V180T, N201S, P210L, K212R, D251N, N272D, N274-, S278R, I281L, -282G, -283R, G286-, A288V, -294G, Q300Y, L305V, G307A, T308E, K315E, G322R, N327-, N335S, M345T, -368T, N369-, T371-, -382G, -383N, I396V, S412T, N433Y, N434T, N435K, E436D, G443A; gp41: I4T, M7L, T25A, G61S, I62V, K77A, I84M, T96A, D109N, G129N, K172R, I177V, I193V, L210F, E228D, I235V, L254I, R259H, N287S, L296I, V318I, I325A, G326V, A328V; nef: S9-; p17: K30Q, R58K, L61I, V94I, K114Q, A115T, N124S, V128A; p2: T10A; p24: S44A, T54I, L83T, T107V, E128D, R132K; p6: L1I, -26R, E29K, Q30D, K31E, D32G, E33Q, G34N, Q52*; p7: G8P, Q9R, R11V, I12-; pro: T12I, G16E, K41R, I62V, I72T; rev: D11E, L12V, T15I, K20R, P28L, S31P, E47Q, H53S, S54A, R57G, A68T, P72H, I102V, T114N; tat: R7N, T40K, P58S, S70P; vif: R37G, F39V, H48N, A62N, I124L, V129I, P131T, L163F, V166A, G182D, N190S; vpr: Y15H, R32K, R80K, R87T; vpu: R37K, R47T, -66A, -67V, N80T, L82Q"}}}, {"name": "CRF29_BF1_NODE_0000005", "node_attrs": {"div": 0.16485999999999998, "clade_membership": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A296T", "A301-", "A302-", "A303-", "A304-", "T306-", "T307-", "T308-", "T309-", "G310-", "A311-", "A314T", "C467T", "A1476G", "C1670A", "G2343A", "G2580A", "G2727A", "T2770C", "A2985G", "G3508A", "T3545A", "A3825C", "T3904C", "T4435C", "C4525A", "G4735A", "G4766A", "C5221T", "T5237C", "C5281T", "A5548C", "-5792T", "-5793G", "-5799T", "C5964T", "A6044G", "C6190T", "G6198A", "-6217G", "-6221G", "A6222T", "T6328G", "C6345T", "A6353C", "A6392G", "G6526A", "C6707T", "G6716A", "T6719A", "T6735G", "C6752A", "G6771A", "G6776A", "A6779G", "C6807T", "-6831A", "-6832A", "A6837C", "T6838A", "A6840C", "T6856G", "C6857A", "A6859C", "-6956G", "-6957A", "-6976A", "C6991A", "C6993A", "-7005A", "C7020A", "T7047G", "C7107T", "G7375A", "G7604A", "A7666G", "T7715G", "A7764C", "A7796T", "C7941A", "A7962G", "C8209T", "G8385A", "G8398A", "C8406A", "A8660G", "T8747C"], "INT": ["E11D", "N17T"], "RT-p51": ["R83K", "R211K", "K297R"], "RT-p66": ["R83K", "R211K", "K297R", "L484I"], "gp120": ["A37V", "N64D", "N105K", "M126-", "N158K", "T164I", "N167H", "H280R", "Q300K", "S306N", "A318V", "N328T", "K329T", "T330K", "N334K", "-378N", "-379T", "T385N", "M398R", "S418L"], "gp41": ["A101T", "S138A", "T165S", "P213Q", "E220G"], "p17": ["E102D"], "p7": ["S4G"], "tat": ["K85E"], "vif": ["R50K"], "vpr": ["Y45H"]}, "labels": {"aa": "INT: E11D, N17T; RT-p51: R83K, R211K, K297R; RT-p66: R83K, R211K, K297R, L484I; gp120: A37V, N64D, N105K, M126-, N158K, T164I, N167H, H280R, Q300K, S306N, A318V, N328T, K329T, T330K, N334K, -378N, -379T, T385N, M398R, S418L; gp41: A101T, S138A, T165S, P213Q, E220G; p17: E102D; p7: S4G; tat: K85E; vif: R50K; vpr: Y45H"}}, "children": [{"name": "JF804811", "node_attrs": {"div": 0.21084999999999998, "accession": "JF804811", "clade_membership": {"value": "CRF29_BF1"}, "country": {"value": "BR"}, "date": {"value": 2005.0}, "Strain_name": {"value": "0647SV"}, "LANL_subtype": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G294A", "T377C", "G379A", "A417C", "A485C", "A516T", "T571A", "A607G", "A609T", "T610A", "A611T", "T614C", "G615A", "A655G", "C662T", "A666G", "G690A", "G697A", "A699G", "A705T", "A706G", "G709A", "T767C", "C768T", "T824C", "T852A", "C950A", "G956A", "A1074G", "A1115C", "G1272A", "C1316T", "G1346A", "A1349G", "A1370G", "G1388A", "C1406T", "G1419A", "G1424A", "A1449G", "T1501G", "T1511C", "A1529G", "A1532G", "G1561A", "A1586G", "A1642G", "G1673A", "T1682C", "C1692A", "A1733G", "A1743G", "A1781T", "A1783G", "C1826T", "C1831T", "A1839G", "C1987T", "G2026A", "A2032G", "A2075G", "T2080A", "T2083C", "C2105T", "G2134A", "G2230A", "T2263C", "A2293G", "T2383C", "T2497C", "G2509A", "A2545G", "A2551G", "A2579C", "C2581T", "T2654C", "A2665C", "A2707G", "A2755G", "A2839C", "C2857T", "A2896T", "C2908T", "G2921A", "C2927T", "A2929C", "A2951G", "C3006A", "C3067T", "G3091A", "C3175T", "A3192G", "A3214G", "G3221A", "T3323G", "T3349C", "G3391A", "A3409G", "C3412A", "C3504A", "G3529A", "A3532T", "T3541C", "A3622G", "A3666T", "A3676T", "A3733G", "T3778C", "T3793C", "A3808T", "T3811C", "C3857T", "G3884A", "G3935A", "A4057G", "A4112G", "G4145A", "C4162T", "C4180T", "T4216C", "A4249G", "A4391C", "A4401C", "A4420C", "A4422C", "A4427T", "C4428A", "A4429C", "C4487-", "C4488-", "A4489-", "G4490-", "C4491-", "A4492-", "A4493-", "A4494-", "G4495-", "C4496-", "T4497-", "A4498-", "C4499-", "T4500-", "C4501-", "T4502-", "G4503-", "G4504-", "A4505-", "A4507C", "T4510C", "A4528T", "G4549A", "C4643T", "C4674T", "C4691T", "A4727G", "A4736G", "C5006T", "T5018C", "C5019T", "C5027T", "C5050A", "A5061C", "G5075T", "T5083C", "G5131A", "C5213A", "A5215T", "A5269G", "C5280A", "A5293C", "A5330G", "T5336C", "T5356C", "G5396A", "A5397C", "C5398T", "C5404T", "G5412A", "A5421G", "G5437C", "A5448G", "C5451T", "T5466C", "T5470C", "T5492C", "C5567T", "C5569G", "C5602A", "T5614G", "T5626G", "T5627C", "C5686G", "G5700A", "G5721A", "C5727T", "C5795T", "G5803-", "C5834T", "G5853A", "C5859T", "C5878T", "T5899A", "A5935C", "A6008G", "G6020T", "G6023T", "A6025T", "G6028A", "G6037A", "G6086C", "C6097A", "C6110G", "C6115T", "G6149A", "T6166C", "T6169A", "T6175G", "T6178C", "C6183G", "T6193A", "T6199C", "G6201T", "T6202C", "G6203A", "-6204G", "-6205T", "-6208A", "-6209A", "-6210T", "-6211G", "-6212C", "-6213T", "-6214A", "A6215C", "-6216T", "-6219C", "G6227C", "C6234G", "C6238T", "-6254A", "-6255C", "-6256C", "C6258A", "A6260G", "T6299G", "T6310C", "G6311A", "G6314A", "A6316G", "T6334G", "A6346T", "C6361T", "C6375G", "A6376G", "G6380A", "C6397T", "A6407T", "C6443A", "A6464C", "T6536C", "G6572A", "A6576G", "T6590A", "C6591G", "G6593A", "T6598C", "A6602T", "G6604A", "T6637C", "G6647A", "A6671G", "A6672T", "C6678T", "A6686G", "A6693G", "A6695-", "T6696-", "-6701A", "-6702C", "C6708G", "A6715G", "G6732A", "C6758T", "A6764G", "C6766A", "C6767G", "A6775G", "A6780C", "A6781T", "G6785A", "A6788C", "A6789G", "T6793C", "T6794C", "A6797G", "-6830G", "C6843A", "C6849T", "T6883A", "G6884A", "A6885C", "G6894A", "A6935C", "A6936T", "G6948C", "T6958G", "-6961G", "A6962C", "-6963A", "-6964T", "C6966A", "-6968A", "G6969C", "G6970C", "-6972C", "-6974C", "A6977C", "-6980T", "-6984T", "T6985A", "A6987T", "T6988G", "-6997A", "-6998T", "-6999G", "-7000A", "-7001T", "-7002G", "-7006A", "A7021C", "A7090T", "C7094A", "A7095T", "G7101A", "T7102C", "C7127T", "T7130C", "T7144A", "A7148C", "A7149C", "T7150A", "A7154G", "C7156G", "A7158C", "G7160C", "G7162A", "C7165T", "G7181C", "G7182A", "G7198A", "A7215T", "A7255G", "A7269G", "A7313C", "A7315G", "C7320T", "T7321C", "A7322T", "G7369A", "A7399G", "A7441G", "A7471G", "A7523G", "T7597C", "G7631T", "A7633T", "A7641G", "A7644G", "T7656G", "T7682C", "G7688T", "A7689C", "T7702A", "A7706C", "A7710T", "A7729G", "T7748C", "G7759A", "C7801T", "C7813T", "A7832G", "G7847A", "G7929T", "C7939T", "T7968C", "G8001C", "T8016C", "G8018A", "A8019G", "A8032G", "C8044A", "T8070C", "C8080A", "A8104G", "G8139A", "A8143G", "A8152G", "A8163G", "A8250G", "G8255A", "T8257A", "T8268C", "T8279G", "C8291A", "T8298C", "C8304G", "G8330A", "C8331G", "G8342A", "T8348G", "A8364C", "T8371G", "G8372A", "G8374A", "C8383A", "T8384A", "G8394A", "G8407A", "T8440C", "C8460T", "G8476A", "A8525G", "A8531T", "G8534A", "G8537A", "T8558C", "G8561A", "A8584T", "T8595C", "T8596A", "A8597T", "T8600C", "C8607T", "A8608T", "C8651T", "G8717A", "A8746T", "C8791A", "C8795G", "G8799A", "G8807A", "T8813C", "G8814A", "C8904A", "G8912A", "T8923G", "G8924A", "C8937T", "G8955A", "C8960A", "C8971T", "T8974G", "T9012A", "T9019G", "T9029C", "T9074C"], "INT": ["V37I", "V54I", "I113V", "A124T", "T206P", "Q209P", "P238-", "A239-", "K240-", "L241-", "L242-", "W243-", "K244-"], "RT-p51": ["P4S", "S162H", "E248D", "V276I", "Q278Y", "T286A", "A304E", "K366R", "A376T", "W410G"], "RT-p66": ["P4S", "S162H", "E248D", "V276I", "Q278Y", "T286A", "A304E", "K366R", "A376T", "W410G", "T470N", "L479F", "Q524L", "K527N"], "gp120": ["A2V", "N52D", "V56L", "V57F", "E78Q", "Q86E", "V99I", "-107K", "T110S", "N113K", "S116T", "-123A", "-124V", "-126Q", "-127M", "-134T", "T135K", "S136G", "Y149D", "V153I", "V154M", "N160K", "T174R", "A176T", "I185F", "L197I", "K204Q", "S228P", "E240K", "E241G", "E247K", "T250S", "E265K", "N273V", "T275I", "S278G", "I281T", "-285W", "A288T", "F289I", "G293E", "-294R", "H302Y", "N304E", "L305V", "K309A", "K312R", "K315E", "-326E", "E344T", "S347N", "K361L", "S365T", "N369-", "T371-", "-375E", "-376K", "-377H", "-380T", "P389H", "Q414I", "S416N", "N432P", "N434G", "N435T", "E436Q", "G443Q", "E454V", "K472R"], "gp41": ["I4L", "M7L", "V24I", "R74G", "E110Y", "D113G", "N114S", "M118R", "Y127H", "G129S", "I135L", "E136V", "K154T", "K172R", "I177V", "V182I", "R209L", "I222T", "R233T", "V238A", "D239S", "D247E", "L256T", "W279*", "N287S", "D316G", "V318I", "V322A", "L330I", "I332T", "T334R", "A343S"], "nef": ["S8R", "M10R", "G11D", "A14E", "A15T", "E18K", "R22K", "V33A", "H40Y", "S45N", "D54A", "E63D", "Y81F", "V85H", "H89F", "Y135F", "P150Q", "V153I", "E158K", "R188S", "M194R", "H199Y", "D205N", "C206*"], "p1": ["K4R"], "p17": ["R15K", "K28Q", "F79Y", "K91R", "I92Y", "V94I", "E107G", "S111G", "A119T", "G121D", "T122A", "N124C", "S125N"], "p24": ["I6L", "Q13*", "S41T", "I115V", "E128D", "V181I", "V230I"], "p6": ["P5T", "T22A", "L35R", "S51L"], "p7": ["I12S", "R32K"], "pro": ["K14R", "I93V"], "rev": ["Q51H", "R57K", "N62D", "P74H", "L78I", "S99G", "I102V"], "tat": ["R7N", "P10S", "A21P", "F32L", "I39T", "T64I", "H65D", "A74S", "P77L", "S87P"], "vif": ["H30Y", "A155N", "T159A", "L163F", "V166A", "G182D"], "vpr": ["P37T", "A59D", "I84T"], "vpu": ["S3A", "L7A", "L27V", "E63D", "-69V", "-70L", "M71V", "P76L"]}, "labels": {"aa": "INT: V37I, V54I, I113V, A124T, T206P, Q209P, P238-, A239-, K240-, L241-, L242-, W243-, K244-; RT-p51: P4S, S162H, E248D, V276I, Q278Y, T286A, A304E, K366R, A376T, W410G; RT-p66: P4S, S162H, E248D, V276I, Q278Y, T286A, A304E, K366R, A376T, W410G, T470N, L479F, Q524L, K527N; gp120: A2V, N52D, V56L, V57F, E78Q, Q86E, V99I, -107K, T110S, N113K, S116T, -123A, -124V, -126Q, -127M, -134T, T135K, S136G, Y149D, V153I, V154M, N160K, T174R, A176T, I185F, L197I, K204Q, S228P, E240K, E241G, E247K, T250S, E265K, N273V, T275I, S278G, I281T, -285W, A288T, F289I, G293E, -294R, H302Y, N304E, L305V, K309A, K312R, K315E, -326E, E344T, S347N, K361L, S365T, N369-, T371-, -375E, -376K, -377H, -380T, P389H, Q414I, S416N, N432P, N434G, N435T, E436Q, G443Q, E454V, K472R; gp41: I4L, M7L, V24I, R74G, E110Y, D113G, N114S, M118R, Y127H, G129S, I135L, E136V, K154T, K172R, I177V, V182I, R209L, I222T, R233T, V238A, D239S, D247E, L256T, W279*, N287S, D316G, V318I, V322A, L330I, I332T, T334R, A343S; nef: S8R, M10R, G11D, A14E, A15T, E18K, R22K, V33A, H40Y, S45N, D54A, E63D, Y81F, V85H, H89F, Y135F, P150Q, V153I, E158K, R188S, M194R, H199Y, D205N, C206*; p1: K4R; p17: R15K, K28Q, F79Y, K91R, I92Y, V94I, E107G, S111G, A119T, G121D, T122A, N124C, S125N; p24: I6L, Q13*, S41T, I115V, E128D, V181I, V230I; p6: P5T, T22A, L35R, S51L; p7: I12S, R32K; pro: K14R, I93V; rev: Q51H, R57K, N62D, P74H, L78I, S99G, I102V; tat: R7N, P10S, A21P, F32L, I39T, T64I, H65D, A74S, P77L, S87P; vif: H30Y, A155N, T159A, L163F, V166A, G182D; vpr: P37T, A59D, I84T; vpu: S3A, L7A, L27V, E63D, -69V, -70L, M71V, P76L"}}}, {"name": "JF804806", "node_attrs": {"div": 0.20432999999999998, "accession": "JF804806", "clade_membership": {"value": "CRF29_BF1"}, "country": {"value": "BR"}, "date": {"value": 2005.0}, "Strain_name": {"value": "0063SP"}, "LANL_subtype": {"value": "CRF29_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G369C", "A380G", "A425G", "T426C", "T473C", "T476C", "A485G", "C540A", "T572C", "A581G", "G608A", "A672G", "A677G", "C679A", "G712A", "C747A", "C771G", "A774T", "G869A", "A959G", "A998G", "T1001A", "A1020C", "T1148C", "C1244T", "A1274G", "G1277A", "G1302A", "G1313A", "C1362T", "A1452C", "G1455A", "C1456A", "G1461A", "G1472A", "A1493G", "T1501C", "C1680A", "G1685A", "G1709A", "A1772G", "G1773A", "A1783T", "T1785G", "C1787T", "C1826G", "G1840A", "A1841G", "C1853T", "A1900G", "C1914A", "A1993G", "C2206T", "A2305G", "A2320G", "A2362G", "G2363A", "A2374G", "A2406G", "A2461G", "G2470A", "C2575T", "A2617C", "A2637G", "A2678T", "T2778G", "G2830A", "A2842G", "G2902A", "A2920G", "C2953T", "C3002T", "G3004A", "G3046A", "C3067A", "T3068G", "A3080C", "G3093A", "G3094C", "G3173A", "C3223T", "G3250A", "C3252T", "A3265G", "C3352A", "A3370G", "C3394T", "A3395G", "A3449C", "G3494A", "G3524A", "A3535T", "A3543T", "G3595A", "G3643A", "G3664A", "C3665G", "G3685A", "A3715G", "G3718A", "T3746C", "A3769G", "A3808C", "T3820C", "A3886G", "G3907A", "G3952A", "A4112T", "T4137C", "C4140T", "A4195T", "T4234A", "C4321T", "A4407G", "A4455T", "G4573A", "T4585C", "C4645A", "A4695G", "T4730C", "C4757T", "A4769T", "G4770A", "C4771A", "T4793C", "G4799A", "G4802A", "C4803A", "G4865A", "T4916C", "A4956T", "A4970G", "G4971A", "C4977A", "A5036G", "A5049G", "A5057G", "A5069G", "G5140A", "T5203C", "T5224C", "G5225A", "T5442C", "A5448T", "C5559T", "G5561A", "C5567A", "C5611A", "A5613C", "T5614C", "A5621C", "T5651C", "A5734C", "C5787A", "C5797G", "T5798C", "G5800A", "-5804A", "-5805G", "-5806A", "-5807T", "-5808G", "-5809G", "-5810A", "-5811G", "-5812C", "-5813C", "-5814T", "-5815G", "-5816A", "-5817T", "-5818A", "-5819T", "G5821-", "G5822-", "G5823-", "C5824-", "A5825-", "C5826-", "G5827-", "A5828-", "T5829-", "G5830-", "C5831-", "T5843A", "G5848A", "C5851T", "C5862G", "G5864A", "C5916A", "C5917T", "A6009G", "G6023C", "C6052T", "T6091C", "T6134A", "T6151C", "T6154C", "T6169G", "A6174T", "A6177C", "T6184C", "A6186C", "C6189A", "G6201C", "-6204C", "-6205G", "A6206-", "G6207-", "A6215G", "-6216A", "-6219G", "A6248G", "G6261A", "A6265G", "G6269-", "A6270-", "T6271-", "T6276A", "G6280T", "C6293A", "C6305A", "T6306C", "C6317T", "T6325G", "A6333C", "A6335T", "G6339A", "G6368A", "T6369C", "T6424C", "G6430A", "A6488G", "A6595G", "A6646G", "G6647C", "A6668G", "A6669G", "G6681T", "T6688-", "A6689-", "T6690-", "A6691-", "C6692-", "A6693-", "-6697A", "-6698A", "-6699A", "-6700A", "-6701G", "-6702T", "C6717T", "T6721C", "C6729A", "T6760G", "G6773A", "C6790A", "A6820G", "-6830A", "A6842C", "C6843G", "T6932A", "-6961C", "-6963G", "-6964C", "-6968T", "-6972A", "-6974A", "C6978T", "-6980G", "G6981A", "-6984A", "A6990C", "A6992G", "-7006T", "A7032G", "A7044G", "G7048A", "G7054A", "G7089T", "T7130A", "T7144G", "G7145A", "T7147A", "A7149G", "A7158G", "A7161G", "C7170T", "A7268C", "A7269C", "A7275G", "G7319C", "A7366G", "A7373C", "G7390A", "A7396G", "G7459A", "T7462G", "A7470G", "A7553C", "G7614A", "T7615C", "A7620G", "T7622A", "C7625T", "T7626A", "G7627T", "A7633C", "G7640A", "T7642C", "C7658G", "A7668G", "C7690A", "A7747T", "A7763T", "G7765A", "A7782G", "T7789C", "G7818A", "C7825T", "G7839C", "G7868A", "G7885A", "C7898A", "G7937A", "G7947A", "A7948C", "G7965A", "A7974G", "G7987A", "A7996C", "G7997A", "T8020C", "G8061T", "A8069C", "G8079A", "A8092T", "A8118G", "T8121A", "T8156C", "G8157T", "G8181T", "G8208A", "G8219A", "A8224T", "C8232T", "G8245A", "A8276G", "T8277C", "T8290C", "C8294A", "T8366C", "A8370C", "T8375G", "C8386A", "A8409G", "A8413G", "G8432A", "G8453A", "A8458G", "C8503A", "C8514G", "G8534T", "T8595G", "C8609T", "C8646T", "G8659A", "A8662G", "G8666C", "G8682A", "C8687T", "C8751G", "A8797T", "C8809T", "A8812C", "G8817A", "A8823G", "A8844C", "G8848A", "A8870G", "G8875A", "A8876G", "T8915C", "T8966C", "C8967T", "T9068C", "T9075-", "T9115C"], "INT": ["I113L", "F121S", "T122I", "K211R", "Y227F"], "RT-p51": ["V90I", "K104R", "S162N", "Q174H", "Y181C", "I195L", "L228R", "D324E", "L325V", "I329L", "G333D", "A360T", "T386I", "I434V"], "RT-p66": ["V90I", "K104R", "S162N", "Q174H", "Y181C", "I195L", "L228R", "D324E", "L325V", "I329L", "G333D", "A360T", "T386I", "I434V", "K452Q", "V467I", "A477T", "Q480H", "Q483L", "Q524E"], "gp120": ["A3G", "E4K", "T21N", "N52S", "V57L", "L94I", "-107I", "N108T", "N111T", "S114C", "S116F", "-117D", "-118V", "M119T", "-120N", "-121M", "E122-", "E125-", "N128-", "C129-", "S130-", "F131-", "N132-", "V133-", "T135-", "S136-", "I137-", "G138-", "D139G", "M141K", "Q142H", "L147I", "L151T", "P155S", "D157E", "N160T", "T161S", "S162N", "V172T", "K212E", "E265Q", "N272G", "R276I", "-282I", "-283Y", "G284A", "-285K", "A288I", "F289-", "Y290-", "A291-", "T292-", "G293-", "H302Q", "G307R", "K309E", "K311E", "-326K", "K330R", "I332T", "S360T", "-368Q", "-370S", "-372W", "-373N", "-374K", "-375I", "-376E", "-377N", "-380D", "-381D", "P389Q", "K393R", "N397S", "S412I", "L426I", "G431R", "N432S", "N434S", "N435S", "E436G", "T439I", "K472P", "K474R"], "gp41": ["V6P", "V24L", "H53Q", "Q56R", "I84L", "S104N", "K106R", "S107T", "L108Y", "E110D", "D113N", "Q119E", "K122R", "G129E", "E148D", "K154S", "N160S", "G179A", "A189T", "Q199K", "A212T", "G215D", "G221E", "E224G", "K231N", "D232N", "C253F", "R259H", "L263F", "E272G", "L273H", "W285L", "S293I", "S302N", "A306T", "A310V", "I325A", "G326C", "H331N"], "nef": ["M10L", "A15N", "T23A", "E24G", "K39R", "L58V", "E64D", "H102Y", "R106K", "Q107R", "E108D", "V114I", "L137V", "E151D", "Q152L", "A156V", "N157T", "G159R", "N161D", "M168L", "S169N", "R178K"], "p17": ["E12Q", "L61I", "Q69K", "K113E", "A115E", "S126N"], "p2": ["G9-", "T10S", "A11P", "V12N", "-13I"], "p24": ["P14A", "I15L", "V191I"], "p6": ["L1I", "D32N", "Y36E"], "p7": ["I12T"], "pro": ["L10V", "I15V", "P39Q"], "rev": ["T15I", "V16I", "L18I", "S30N", "S31P", "T34P", "E47K", "R50Q", "W58R", "T82S", "D86N", "L103S", "E111D"], "tat": ["K24N", "S62N", "T64N", "D80T", "E86K"], "vif": ["T20K", "R37G", "E61D", "A62N", "H73N", "I124L", "V129I", "P131T", "G185E"], "vpr": ["G41S"], "vpu": ["Q2N", "S3P", "Q5P", "V15A", "I43L", "Q61R", "-66A", "-67A", "-68M", "-70E", "G72E", "H73P", "A75I", "V79D", "D81N"]}, "labels": {"aa": "INT: I113L, F121S, T122I, K211R, Y227F; RT-p51: V90I, K104R, S162N, Q174H, Y181C, I195L, L228R, D324E, L325V, I329L, G333D, A360T, T386I, I434V; RT-p66: V90I, K104R, S162N, Q174H, Y181C, I195L, L228R, D324E, L325V, I329L, G333D, A360T, T386I, I434V, K452Q, V467I, A477T, Q480H, Q483L, Q524E; gp120: A3G, E4K, T21N, N52S, V57L, L94I, -107I, N108T, N111T, S114C, S116F, -117D, -118V, M119T, -120N, -121M, E122-, E125-, N128-, C129-, S130-, F131-, N132-, V133-, T135-, S136-, I137-, G138-, D139G, M141K, Q142H, L147I, L151T, P155S, D157E, N160T, T161S, S162N, V172T, K212E, E265Q, N272G, R276I, -282I, -283Y, G284A, -285K, A288I, F289-, Y290-, A291-, T292-, G293-, H302Q, G307R, K309E, K311E, -326K, K330R, I332T, S360T, -368Q, -370S, -372W, -373N, -374K, -375I, -376E, -377N, -380D, -381D, P389Q, K393R, N397S, S412I, L426I, G431R, N432S, N434S, N435S, E436G, T439I, K472P, K474R; gp41: V6P, V24L, H53Q, Q56R, I84L, S104N, K106R, S107T, L108Y, E110D, D113N, Q119E, K122R, G129E, E148D, K154S, N160S, G179A, A189T, Q199K, A212T, G215D, G221E, E224G, K231N, D232N, C253F, R259H, L263F, E272G, L273H, W285L, S293I, S302N, A306T, A310V, I325A, G326C, H331N; nef: M10L, A15N, T23A, E24G, K39R, L58V, E64D, H102Y, R106K, Q107R, E108D, V114I, L137V, E151D, Q152L, A156V, N157T, G159R, N161D, M168L, S169N, R178K; p17: E12Q, L61I, Q69K, K113E, A115E, S126N; p2: G9-, T10S, A11P, V12N, -13I; p24: P14A, I15L, V191I; p6: L1I, D32N, Y36E; p7: I12T; pro: L10V, I15V, P39Q; rev: T15I, V16I, L18I, S30N, S31P, T34P, E47K, R50Q, W58R, T82S, D86N, L103S, E111D; tat: K24N, S62N, T64N, D80T, E86K; vif: T20K, R37G, E61D, A62N, H73N, I124L, V129I, P131T, G185E; vpr: G41S; vpu: Q2N, S3P, Q5P, V15A, I43L, Q61R, -66A, -67A, -68M, -70E, G72E, H73P, A75I, V79D, D81N"}}}]}]}]}]}]}]}, {"name": "NODE_0000215", "node_attrs": {"div": 0.13332000000000002, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G215A", "A485G", "T614G", "C944G", "C974T", "A980G", "A998G", "C1004T", "C1005G", "G1022A", "T1028A", "T1040C", "T1046A", "C1077G", "A1078G", "G1090A", "C1091T", "C1094T", "G1101A", "G1109A", "C1133A", "A1139G", "T1182C", "G1199A", "A1230C", "T1237A", "C1244T", "T1253C", "A1271G", "C1292A", "C1331T", "G1354C", "G1355A", "T1403C", "G1412A", "G1430A", "C1444T", "-1458A", "-1459C", "-1460C", "A1474G", "T1478C", "C1481T", "A1486G", "G1488A", "G1489A", "G1498A", "A1499G", "T1501C", "A1508G", "T1514C", "A1532G", "A1589G", "C1610T", "C1613T", "A1619G", "T1646C", "C1679T", "G1691A", "G1709A", "C1714A", "G1725A", "C1730T", "A1733G", "G1736A", "T1741C", "C1745A", "-1746A", "-1747C", "-1748T", "C1756A", "A1768C", "G1776A", "G1780A", "A1828C", "A1849G", "G1852A", "C1903A", "A1906G", "A1968G", "A1979C", "C1981G", "T1996C", "C2005T", "G2008A", "G2023A", "A2075C", "C2206T", "A2464C", "G2956A", "A2984G", "G3283A", "A3293G", "C3355T", "T3358C", "C3359T", "A3364G", "A3385G", "A3490G", "A4498T", "G4622A", "A4684G", "C4691T", "A4694G", "T4717A", "A4769T", "C4857A", "G4860A", "A4878G", "G4888A", "G4892A", "G4904A", "C5213A", "T5356C", "C5548G", "-5808G", "A5845G", "C5964T", "A6215-", "-6221A", "C6810A", "-6961T", "-6963G", "-6964T", "C7579T", "A7720G", "G7847A", "C7921T", "C8035T", "C8145T", "A8370-", "T8371-", "G8373-", "C8546T", "A9095G", "C9181T"], "INT": ["E256D"], "RT-p51": ["K297E"], "RT-p66": ["K297E"], "gp120": ["A37V", "N105D", "-123K", "-378N", "-379N", "-380T"], "gp41": ["V182I", "G326F"], "nef": ["I10-", "V85L"], "p17": ["D93E"], "p2": ["A7V"], "p24": ["I6L", "D71E", "P92A", "Q116G", "S120N", "V124I", "F169Y", "T178S", "D187E", "G208A"], "p6": ["A12E", "G16R", "I21T", "P23T", "S24P", "P25S", "-26Q", "Q30P", "E33K", "G34E", "*50S"], "p7": ["K3R", "S4G", "K7R", "G8N", "R11K", "I12T"], "pro": ["D35E", "I36M", "K57R", "N61Q", "I93L"], "rev": ["H63Y"], "tat": ["K24N", "I39T"], "vif": ["F44Y", "E61D", "G92R", "I98V", "I109L"], "vpr": ["P37V", "I84T"], "vpu": ["-74H", "N80D"]}, "labels": {"aa": "INT: E256D; RT-p51: K297E; RT-p66: K297E; gp120: A37V, N105D, -123K, -378N, -379N, -380T; gp41: V182I, G326F; nef: I10-, V85L; p17: D93E; p2: A7V; p24: I6L, D71E, P92A, Q116G, S120N, V124I, F169Y, T178S, D187E, G208A; p6: A12E, G16R, I21T, P23T, S24P, P25S, -26Q, Q30P, E33K, G34E, *50S; p7: K3R, S4G, K7R, G8N, R11K, I12T; pro: D35E, I36M, K57R, N61Q, I93L; rev: H63Y; tat: K24N, I39T; vif: F44Y, E61D, G92R, I98V, I109L; vpr: P37V, I84T; vpu: -74H, N80D"}}, "children": [{"name": "results/subtype_trees/CRF90_BF1.nwk", "node_attrs": {"div": 0.16991, "clade_membership": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T201C", "A216G", "A304-", "C467T", "A500G", "A562G", "G599A", "G615A", "T668C", "G743A", "C749T", "G810A", "A866G", "A1089C", "C1136T", "C1211A", "A1265C", "A1397G", "A1445G", "A1643G", "T1790C", "G1846A", "A1908G", "A1988G", "T2005G", "T2071A", "C2098A", "A2154G", "A2155G", "G2198A", "T2199C", "T2206A", "G2224A", "G2230A", "G2273A", "A2311G", "G2341A", "C2353T", "C2356T", "A2362G", "A2380G", "C2386T", "A2419T", "T2440C", "A2461G", "T2476C", "T2485C", "A2500C", "G2518A", "T2527C", "G2548A", "A2560G", "T2668A", "T2689C", "A2701C", "A2707G", "C2708T", "G2710A", "G2722A", "T2723C", "G2728A", "C2857T", "G2872A", "C2909G", "G2969A", "G2972A", "A3043G", "C3252T", "A3286G", "G3442A", "T3469G", "C3589T", "G3664A", "T3668C", "G3755T", "C3799T", "G3825A", "T3826C", "C3856T", "G3859A", "C3889T", "A3901G", "A3916G", "C3940T", "G3951C", "C3962T", "A3985G", "T4006C", "C4015T", "A4021G", "T4024C", "A4025C", "T4042C", "G4051A", "G4057A", "G4060A", "A4069C", "T4075C", "C4078A", "T4079C", "T4153C", "G4174A", "C4201T", "G4376A", "C4381T", "T4412C", "T4537C", "C4643T", "T4678A", "T4679G", "A4683G", "G4696A", "A4725C", "C4871A", "T4910C", "C5050A", "T5062G", "A5122G", "G5167A", "G5225A", "G5267A", "C5281T", "C5303T", "G5330A", "A5375G", "A5426G", "C5444A", "C5445T", "A5547T", "A5555C", "G5565A", "A5566G", "A5570G", "T5576C", "T5577G", "T5578C", "C5602T", "G5629T", "C5713G", "T5778C", "-5800G", "-5804A", "-5806A", "-5807T", "-5809G", "-5810G", "T5857G", "A5866G", "A5869T", "T5951G", "A5952T", "T5956A", "C6007T", "C6010T", "G6020A", "A6022G", "A6174T", "-6175G", "-6180C", "C6183A", "C6190T", "G6201C", "A6206G", "-6210A", "-6211G", "-6212A", "-6213T", "G6218-", "C6253T", "G6269A", "T6337A", "G6345C", "G6346A", "A6376G", "T6385C", "G6430A", "T6457C", "G6458A", "G6525A", "T6536A", "A6544G", "A6594C", "A6595C", "A6602T", "C6618A", "T6637G", "T6641C", "A6693-", "-6697G", "C6707T", "C6708G", "A6709G", "T6745C", "A6767C", "A6773G", "A6775G", "T6787C", "G6802A", "A6809G", "G6871A", "-6956A", "-6957A", "-6977A", "-6978A", "-6979T", "-6984C", "-6985A", "-6996A", "-7001A", "-7005A", "-7009A", "T7047G", "A7095T", "A7096C", "G7101A", "A7108C", "C7127A", "T7159C", "G7162C", "A7246G", "G7256A", "A7373G", "A7445G", "G7459A", "T7622A", "C7623A", "G7628A", "A7629G", "G7631C", "A7666G", "G7688A", "C7690T", "A7706C", "A7729G", "A7755C", "T7852C", "A7873G", "G7885A", "C7898A", "A7912C", "A7915G", "C7960A", "G7965A", "A7974G", "G7995A", "G8007T", "T8008A", "C8009A", "A8032T", "C8051A", "T8103C", "A8143G", "G8144A", "A8152G", "G8255A", "G8274C", "G8276A", "T8278C", "G8280T", "T8290C", "A8303G", "G8304T", "G8342A", "G8349A", "G8350A", "T8369-", "G8372-", "G8402A", "G8407A", "T8411C", "G8412C", "A8413C", "G8414T", "T8426A", "A8441G", "G8446A", "C8451T", "G8453A", "A8458G", "A8461G", "T8462G", "C8471T", "T8477C", "A8486T", "G8499C", "G8506T", "T8507G", "A8516G", "G8531A", "G8540A", "C8585T", "T8603C", "G8627A", "C8640T", "C8648T", "C8652A", "A8762G", "A8796G", "G8805A", "C8825T", "T8835C", "T8843C", "G8852A", "G8858A", "C8867T", "C8868G", "C8869A", "G8873C", "A8885G", "A8886C", "T8887A", "G8955A", "T8966C", "G9007A", "T9036G", "T9075C"], "INT": ["S17N", "G59A", "I84L", "T124A", "V201I"], "RT-p51": ["K20R", "V35T", "V60I", "P272A", "V292I", "V293I", "T386I"], "RT-p66": ["K20R", "V35T", "V60I", "P272A", "V292I", "V293I", "T386I", "A554S"], "gp120": ["S1R", "K5D", "Y33V", "D34E", "V56I", "S114N", "E122-", "R138G", "D139N", "R164T", "D202N", "R224K", "S228T", "E247A", "T250S", "T255N", "N261K", "S263P", "I281M", "P285W", "D294E", "I305L", "R307E", "K319E", "R322K", "-328N", "-370S", "-374T", "-375N", "M398R", "Q414L", "R416K", "L425I", "V468I"], "gp41": ["I4T", "I48V", "A96T", "S107N", "D109S", "E110Q", "D129N", "I135L", "Q199K", "G221E", "E224G", "R231K", "G235I", "V267A", "A281I", "V318I", "R324T", "A325I", "R334V"], "nef": ["G3N", "M20I", "R22Q", "E24P", "D28E", "R35Q", "K39R", "H40R", "A53P", "C55L", "Q104K", "V133I", "E155K", "P176E", "E177D", "M182Q", "D205N", "C206*"], "p17": ["K76R", "V94I"], "p24": ["V27I", "N120H"], "pro": ["N37S", "I64V", "H69Q"], "rev": ["D11V", "K14Q", "R17K", "I19V", "F21R", "R53H", "S54K", "T62S", "A68E", "S99D", "I102V"], "tat": ["Q17R", "T23N", "R57S", "Q60P", "T64A", "V67A", "P84Q", "E86K"], "vif": ["I31K", "K33G", "G37E", "T47P", "G101D", "T155Q", "I159R", "K179R"], "vpr": ["G41S", "A55T"], "vpu": ["A8S", "L27F", "Q36E"]}, "labels": {"aa": "INT: S17N, G59A, I84L, T124A, V201I; RT-p51: K20R, V35T, V60I, P272A, V292I, V293I, T386I; RT-p66: K20R, V35T, V60I, P272A, V292I, V293I, T386I, A554S; gp120: S1R, K5D, Y33V, D34E, V56I, S114N, E122-, R138G, D139N, R164T, D202N, R224K, S228T, E247A, T250S, T255N, N261K, S263P, I281M, P285W, D294E, I305L, R307E, K319E, R322K, -328N, -370S, -374T, -375N, M398R, Q414L, R416K, L425I, V468I; gp41: I4T, I48V, A96T, S107N, D109S, E110Q, D129N, I135L, Q199K, G221E, E224G, R231K, G235I, V267A, A281I, V318I, R324T, A325I, R334V; nef: G3N, M20I, R22Q, E24P, D28E, R35Q, K39R, H40R, A53P, C55L, Q104K, V133I, E155K, P176E, E177D, M182Q, D205N, C206*; p17: K76R, V94I; p24: V27I, N120H; pro: N37S, I64V, H69Q; rev: D11V, K14Q, R17K, I19V, F21R, R53H, S54K, T62S, A68E, S99D, I102V; tat: Q17R, T23N, R57S, Q60P, T64A, V67A, P84Q, E86K; vif: I31K, K33G, G37E, T47P, G101D, T155Q, I159R, K179R; vpr: G41S, A55T; vpu: A8S, L27F, Q36E", "clade": "CRF90_BF1"}}, "children": [{"name": "CRF90_BF1_NODE_0000001", "node_attrs": {"div": 0.17208, "clade_membership": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T1174C", "A1263T", "T1462C", "A1736G", "C2464T", "A2524G", "G2828A", "T3644A", "A5049C", "G5179A", "C5214T", "A5282T", "C5614G", "A5790G", "G5842A", "A5867G", "T6187G", "A6223G", "A6342T", "G6403T", "A6465C", "A7090C", "G8487A", "G8537A"], "RT-p51": ["V245M", "T400A"], "RT-p66": ["V245M", "T400A", "L517I"], "gp120": ["Y163F", "K204T", "-377S"], "p2": ["I13T"], "vpr": ["I60L"], "vpu": ["P3A", "V79I"]}, "labels": {"aa": "RT-p51: V245M, T400A; RT-p66: V245M, T400A, L517I; gp120: Y163F, K204T, -377S; p2: I13T; vpr: I60L; vpu: P3A, V79I"}}, "children": [{"name": "KY628223", "node_attrs": {"div": 0.21203, "accession": "KY628223", "clade_membership": {"value": "CRF90_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "BRGOAP801"}, "LANL_subtype": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "A215G", "G216A", "C227A", "A263G", "T288C", "A303T", "G365C", "A368C", "G369A", "A371T", "A417C", "A428T", "G471C", "A533G", "C558A", "G562A", "A627C", "T635C", "G648A", "A664T", "C679A", "A692G", "T749A", "A774T", "A791G", "T794C", "T852G", "A914T", "A932G", "T978C", "A1002G", "T1003C", "C1089A", "C1103T", "G1126A", "C1137A", "G1173A", "A1241G", "T1262G", "G1271A", "G1313A", "G1346A", "C1406A", "A1442G", "T1483A", "A1485G", "C1541T", "G1553A", "A1567G", "G1664A", "A1687G", "A1709G", "A1714C", "G1727C", "T1730C", "A1746C", "A1771G", "C1787T", "T1873C", "T1986C", "G1988A", "A2056G", "C2075A", "T2087C", "G2134A", "A2216C", "A2233G", "A2329G", "G2363A", "T2386C", "A2459G", "G2530A", "T2581C", "A2592G", "G2602T", "G2656A", "A2665G", "C2739G", "T2758C", "T2800C", "A2842G", "C2848T", "T2873C", "A2925G", "T2944C", "A2972G", "A2974C", "C2975A", "A2985C", "G3019A", "C3067T", "A3136G", "G3168A", "G3236A", "G3250A", "A3264G", "A3274C", "C3275A", "G3286A", "G3385A", "A3503G", "C3542T", "G3643A", "A3676C", "T3742C", "C3773T", "T3779C", "A3825G", "G3834A", "A3859G", "G3866A", "T3970C", "T3977G", "G3985A", "G3989A", "C4025A", "C4075T", "C4138T", "A4148G", "T4201C", "G4263A", "T4288G", "C4321T", "G4353A", "A4391T", "C4537G", "G4573A", "T4665C", "G4673A", "G4679A", "G4683A", "G4684A", "T4702G", "A4785G", "C4786T", "C4803A", "C4820A", "T4840C", "A4860G", "A4865T", "G4870A", "T4932A", "A4950C", "T4952A", "C4976A", "A4993C", "G5040A", "A5058C", "T5072C", "G5082A", "T5102C", "G5140A", "A5154C", "A5159G", "G5185A", "T5237C", "C5280T", "T5303C", "T5311C", "A5364G", "G5370A", "C5371G", "A5397G", "C5438G", "A5447C", "T5448C", "A5453T", "C5495A", "A5545C", "A5565G", "G5570A", "A5574G", "T5584C", "A5594G", "T5600C", "A5607C", "A5619G", "C5651T", "C5679T", "G5692C", "A5693T", "G5700A", "T5707A", "T5708A", "G5730A", "T5739C", "G5775A", "C5778T", "T5799-", "G5800-", "T5801-", "G5802-", "G5803-", "A5804-", "A5806-", "T5807-", "G5808-", "G5809-", "G5810-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5825C", "C5831A", "C5834T", "G5839A", "G5866T", "C5917T", "T5953G", "T6007C", "T6010C", "G6022T", "A6030G", "C6097T", "G6121A", "A6130C", "-6170G", "-6171A", "-6172T", "A6173G", "A6177G", "T6178G", "G6179T", "C6180T", "A6191G", "G6195A", "A6197G", "G6198T", "-6203G", "-6204G", "-6205G", "-6207A", "A6209C", "A6254G", "A6260G", "G6261A", "A6269G", "C6278A", "G6280A", "A6283G", "A6300C", "A6302G", "A6303C", "A6327G", "T6328A", "G6329A", "T6334G", "C6345T", "C6361T", "G6401A", "C6412T", "G6425A", "T6438A", "A6471G", "C6477A", "A6525G", "A6583G", "A6664G", "C6667A", "A6686G", "-6693G", "T6694C", "T6707C", "T6719G", "G6731A", "G6732A", "A6737G", "A6746G", "G6750A", "G6774C", "G6776A", "A6781T", "C6807T", "G6809A", "A6818G", "T6856G", "T6860C", "C6876T", "T6925C", "T6928C", "C6935G", "A6936G", "-6968T", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975T", "A6978C", "-6980A", "-6981G", "-6982C", "-6983C", "C6984T", "A6989T", "C6991T", "-6995A", "-6997A", "A7001-", "T7003-", "-7006G", "C7008T", "G7067T", "C7094T", "A7102C", "T7105C", "C7124A", "A7152G", "C7153T", "A7154G", "C7156G", "A7158G", "A7161C", "C7165T", "C7170T", "G7198A", "A7234G", "G7324A", "G7373A", "G7375A", "T7403C", "T7411C", "T7433C", "A7471G", "A7549G", "A7604T", "A7646C", "A7668G", "G7689A", "A7700G", "C7701A", "A7711G", "A7744G", "A7782G", "T7783C", "T7796A", "A7799C", "A7800G", "T7866G", "T7913C", "A7929C", "C7930G", "C7935G", "G7974A", "C8026T", "C8048G", "G8055A", "C8065T", "T8091G", "A8092T", "G8114C", "C8147A", "T8218C", "T8227A", "G8242A", "A8263G", "C8293T", "T8302A", "G8356T", "A8362G", "A8367C", "G8368T", "-8369G", "-8370A", "-8371G", "-8372A", "-8373G", "-8374C", "G8388A", "A8400T", "A8409G", "C8412A", "A8426G", "C8450T", "G8476T", "G8479A", "C8488G", "A8489T", "C8510T", "C8514G", "G8516A", "T8568C", "C8606T", "T8640C", "A8643G", "T8648C", "A8701T", "A8726G", "A8750C", "C8775T", "G8796A", "A8805G", "G8807A", "A8816G", "T8832C", "G8846A", "G8922A", "T8939C", "A8947T", "C8964T", "A8965G", "G8991A", "C9012A", "G9032A", "T9084G"], "INT": ["N17S", "R20K", "V31I", "L68V", "V72I", "L84I", "T125A", "G163E", "H171Q", "G193E", "T206S", "N254K"], "RT-p51": ["M41L", "V90I", "K122E", "K166R", "E169D", "T215S", "K277R", "I293V", "P294T", "E297A", "R358K", "V381I", "K390R", "Q394K"], "RT-p66": ["M41L", "V90I", "K122E", "K166R", "E169D", "T215S", "K277R", "I293V", "P294T", "E297A", "R358K", "V381I", "K390R", "Q394K", "T470A", "H483Y", "K527N"], "gp120": ["E4D", "E59G", "-106D", "-107K", "N108T", "N109D", "T110N", "N111V", "N113G", "N114E", "S115Q", "-116M", "T134A", "S136D", "N139D", "Q142K", "Y149S", "K150A", "N158R", "D159N", "N160K", "T164I", "E183N", "A191T", "F195Y", "N206S", "T208K", "K224R", "S278G", "H280R", "-282G", "-283R", "W285-", "G286-", "F289V", "G293K", "E294I", "I295V", "I298V", "R299K", "E307A", "K309N", "A318V", "E319K", "K322G", "N334K", "S336P", "P341L", "Q361G", "-368N", "-372W", "-373N", "T374I", "N375T", "N379L", "T380N", "-381Y", "-382T", "-383K", "D384E", "T385I", "A405S", "L414F", "K416N", "L424M", "N433T", "N434G", "N435-", "T437S", "T439I"], "gp41": ["T4I", "M7I", "V24I", "T101S", "M115L", "K122R", "T133D", "N160S", "S165T", "N166R", "F188C", "H209P", "P211R", "G224E", "L249V", "S251N", "L263C", "V271L", "L282I"], "nef": ["W5L", "K7R", "S9L", "-10R", "-11A", "V16I", "I20L", "T23A", "P24T", "G29A", "S45I", "S46N", "A49S", "L58V", "I101V", "Y120F", "E152K", "K155E", "M168I", "Y202F", "*206C"], "p17": ["E12N", "K28Q", "L31F", "V46L", "L75I", "R76K", "K91R", "K98Q", "E105K", "K110I", "A115E"], "p24": ["I15L", "S41A", "I91A", "H120N", "R132K", "L136M", "V148T"], "p6": ["N3S", "E12A", "R16S", "T23P", "K31R"], "p7": ["F6Y", "R7G", "K34R"], "pro": ["L63P", "V64I", "L93I"], "rev": ["E10D", "K17R", "V19I", "K20R", "P28A", "L60F", "P67R", "L73F", "T82S", "C89S", "P100H"], "tat": ["A21G", "N24T", "Y26F", "T39I", "T40K", "S57R", "S68P", "S70P", "T74R", "Q76E"], "vif": ["Y27H", "M29I", "G33K", "F39C", "T67V", "H73N", "D78E", "V85A", "R92G", "R93S", "R95K", "S116T", "N122Q", "S130R", "Q136P", "A152T", "K158Q", "V166I", "G185E", "N190H"], "vpr": ["E17A", "T19A", "V37I", "Y45H", "A59V", "R87G", "A89R"], "vpu": ["A15V", "E29L", "L34K", "-69P", "H73-", "A75D", "P76L", "D78N"]}, "labels": {"aa": "INT: N17S, R20K, V31I, L68V, V72I, L84I, T125A, G163E, H171Q, G193E, T206S, N254K; RT-p51: M41L, V90I, K122E, K166R, E169D, T215S, K277R, I293V, P294T, E297A, R358K, V381I, K390R, Q394K; RT-p66: M41L, V90I, K122E, K166R, E169D, T215S, K277R, I293V, P294T, E297A, R358K, V381I, K390R, Q394K, T470A, H483Y, K527N; gp120: E4D, E59G, -106D, -107K, N108T, N109D, T110N, N111V, N113G, N114E, S115Q, -116M, T134A, S136D, N139D, Q142K, Y149S, K150A, N158R, D159N, N160K, T164I, E183N, A191T, F195Y, N206S, T208K, K224R, S278G, H280R, -282G, -283R, W285-, G286-, F289V, G293K, E294I, I295V, I298V, R299K, E307A, K309N, A318V, E319K, K322G, N334K, S336P, P341L, Q361G, -368N, -372W, -373N, T374I, N375T, N379L, T380N, -381Y, -382T, -383K, D384E, T385I, A405S, L414F, K416N, L424M, N433T, N434G, N435-, T437S, T439I; gp41: T4I, M7I, V24I, T101S, M115L, K122R, T133D, N160S, S165T, N166R, F188C, H209P, P211R, G224E, L249V, S251N, L263C, V271L, L282I; nef: W5L, K7R, S9L, -10R, -11A, V16I, I20L, T23A, P24T, G29A, S45I, S46N, A49S, L58V, I101V, Y120F, E152K, K155E, M168I, Y202F, *206C; p17: E12N, K28Q, L31F, V46L, L75I, R76K, K91R, K98Q, E105K, K110I, A115E; p24: I15L, S41A, I91A, H120N, R132K, L136M, V148T; p6: N3S, E12A, R16S, T23P, K31R; p7: F6Y, R7G, K34R; pro: L63P, V64I, L93I; rev: E10D, K17R, V19I, K20R, P28A, L60F, P67R, L73F, T82S, C89S, P100H; tat: A21G, N24T, Y26F, T39I, T40K, S57R, S68P, S70P, T74R, Q76E; vif: Y27H, M29I, G33K, F39C, T67V, H73N, D78E, V85A, R92G, R93S, R95K, S116T, N122Q, S130R, Q136P, A152T, K158Q, V166I, G185E, N190H; vpr: E17A, T19A, V37I, Y45H, A59V, R87G, A89R; vpu: A15V, E29L, L34K, -69P, H73-, A75D, P76L, D78N"}}}, {"name": "CRF90_BF1_NODE_0000002", "node_attrs": {"div": 0.18383000000000002, "clade_membership": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["-304A", "-305A", "A353G", "A464G", "T476C", "G607A", "C668T", "G712A", "A725G", "C890T", "A1115C", "A1151G", "G1404A", "C1491A", "G1495A", "A1498G", "C1501T", "C1541A", "A1588G", "G1643A", "T1676C", "C1747G", "A1781G", "T1895G", "C1987T", "C2003A", "T2095C", "A2273G", "C2281T", "A2969G", "A3010G", "C3023T", "G3044A", "A3096T", "A3280G", "G3490A", "G3651A", "A3674C", "G3694T", "G4150A", "A4303G", "A4376G", "T4655C", "C4726A", "T4969G", "T4991C", "A5112G", "G5114C", "T5147C", "A5215G", "A5312G", "G5359C", "T5492C", "A5493G", "A5560G", "C5578T", "G5653A", "G5713C", "T5731A", "A5787G", "A5911C", "G5963A", "T5964A", "A6020G", "C6110G", "-6170T", "-6171G", "-6172G", "T6174A", "A6282G", "T6523C", "G6578A", "T6688-", "A6689-", "T6690-", "A6691-", "C6692-", "G6697A", "-6698C", "-6699A", "-6701A", "-6703G", "C6745T", "G6774A", "C6790T", "G6819A", "A6840G", "G6848A", "G6905A", "A6937G", "-6983A", "A6987C", "T6994-", "-7000A", "A7005G", "-7006C", "A7428G", "G7450A", "T7642A", "G7883A", "G7991A", "A8396G", "C8415A", "T8471A", "C8488A", "C8491A", "A8627G", "T8740C", "A8851T", "T8864G", "C8873A", "A8874G", "C8960A", "C9108T"], "INT": ["I201V"], "RT-p51": ["I60V", "I292V", "V317M", "Q334L"], "RT-p66": ["I60V", "I292V", "V317M", "Q334L", "S519N", "K527Q"], "gp120": ["E19D", "V37K", "I56V", "Q86E", "K143R", "V242I", "M281-", "V332I", "G351R"], "gp41": ["N42S", "D113E", "V194I", "D230N"], "nef": ["A49K", "A50D", "I133T", "Q170L", "D174E", "D177E", "R178G"], "p17": ["S126N"], "p24": ["E128D", "V148A", "G225S"], "p6": ["T23S"], "p7": ["R10N", "T12I", "K41R"], "pro": ["L33V", "Q69K"], "rev": ["R48K"], "tat": ["S62G"], "vif": ["P47H", "I128R", "K176D"], "vpr": ["Q3R", "A4P", "Y15H", "I70V", "R85P"], "vpu": ["E36Q", "L42I"]}, "labels": {"aa": "INT: I201V; RT-p51: I60V, I292V, V317M, Q334L; RT-p66: I60V, I292V, V317M, Q334L, S519N, K527Q; gp120: E19D, V37K, I56V, Q86E, K143R, V242I, M281-, V332I, G351R; gp41: N42S, D113E, V194I, D230N; nef: A49K, A50D, I133T, Q170L, D174E, D177E, R178G; p17: S126N; p24: E128D, V148A, G225S; p6: T23S; p7: R10N, T12I, K41R; pro: L33V, Q69K; rev: R48K; tat: S62G; vif: P47H, I128R, K176D; vpr: Q3R, A4P, Y15H, I70V, R85P; vpu: E36Q, L42I"}}, "children": [{"name": "KY628221", "node_attrs": {"div": 0.21291000000000002, "accession": "KY628221", "clade_membership": {"value": "CRF90_BF1"}, "country": {"value": "BR"}, "date": {"value": 2011.0}, "Strain_name": {"value": "BRGO6043"}, "LANL_subtype": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C201T", "A215G", "G265A", "A388G", "G394A", "G455A", "C516T", "T602C", "G608T", "G612A", "A632G", "A643G", "A730T", "C773T", "A809G", "T852A", "G866A", "A945G", "A959G", "T978C", "G980A", "G1067A", "A1093C", "C1103T", "C1175T", "G1192A", "C1265T", "C1316T", "T1334C", "G1346A", "C1362T", "A1418G", "T1457C", "C1478G", "G1486A", "G1487C", "G1503A", "A1525G", "G1532A", "G1553A", "C1656A", "A1670G", "C1693T", "A1756T", "C1767G", "C1768A", "A1793T", "G1794A", "C1825G", "T1986A", "C1996T", "T2236C", "C2296T", "T2365C", "T2464G", "G2470A", "A2498G", "C2503T", "G2539A", "A2545C", "A2592G", "C2596T", "C2626G", "T2632C", "A2743G", "T2854G", "A2884G", "A2972G", "T3040A", "C3067T", "A3080G", "A3103G", "G3154A", "A3292G", "C3358T", "G3364A", "G3398A", "A3403G", "C3496T", "T3721A", "T3754C", "T3946C", "A4012G", "A4270T", "A4407G", "C4543T", "C4569T", "G4683A", "T4702A", "A4774G", "G4835A", "G4878A", "G4887A", "A4888G", "T4952A", "A5046G", "C5052A", "A5056G", "A5057G", "A5086G", "A5090G", "G5140A", "C5162T", "A5213G", "T5239C", "G5275A", "T5293C", "A5336T", "A5369G", "T5424C", "G5427A", "C5495G", "G5501C", "T5515A", "A5545G", "C5563T", "A5564C", "T5584C", "T5616C", "C5620A", "A5621C", "T5626A", "G5729A", "C5778T", "C5795G", "A5796G", "-5805A", "G5866A", "A5915G", "C5916T", "A6019G", "A6176C", "A6185C", "G6198C", "C6201-", "T6202-", "G6206A", "-6207G", "A6208G", "-6214A", "-6219T", "G6223T", "A6229C", "A6254G", "A6353G", "C6361T", "T6395A", "C6396G", "T6403A", "C6412A", "C6427T", "C6446A", "A6458G", "A6461G", "C6469T", "A6489C", "C6499T", "G6572A", "A6574G", "G6604A", "G6611A", "A6618G", "G6647A", "A6648T", "A6649C", "A6682G", "-6700G", "-6702T", "A6734G", "T6735A", "G6773A", "G6776A", "A6779G", "A6781C", "C6787T", "A6818T", "A6820T", "T6828-", "T6829-", "A6833-", "A6841G", "C6919T", "C6935A", "A6936G", "A6956T", "A6957T", "A6962G", "G6963A", "A6965G", "T6976-", "T6979C", "-6980G", "-6981A", "-6982G", "A6990G", "A6996-", "-7002C", "C7008A", "A7009T", "G7048A", "A7102G", "T7105C", "A7151G", "C7153T", "A7157C", "C7159A", "G7160A", "A7161C", "G7168A", "G7291A", "A7312G", "G7426A", "A7471G", "G7492A", "G7552A", "C7645A", "A7688G", "C7701A", "G7712C", "G7717A", "A7750G", "G7807A", "T7913G", "T7921G", "C7931T", "C7938T", "G7947A", "T7968C", "G7997A", "T8032G", "C8065T", "G8079A", "A8092T", "T8145C", "G8219A", "G8254A", "T8265C", "A8288G", "G8303A", "T8304G", "T8366C", "-8369T", "-8370A", "-8371G", "-8372A", "-8373T", "-8374C", "C8382G", "C8412G", "T8414A", "A8415G", "A8426G", "A8474T", "T8501C", "G8534T", "A8584T", "T8595C", "C8606T", "T8648C", "T8711C", "C8720T", "C8741T", "A8746T", "C8775T", "A8777G", "T8825C", "G8846A", "T8867C", "A8893G", "C8903T", "G8905T", "C8921T", "G8936A", "C8957T", "G8991A", "A9009G", "G9013A", "G9137A"], "INT": ["K211R", "A265V"], "RT-p51": ["D123E", "I135V", "K166R", "D177E", "I293V", "H315Q", "I329V", "V435I"], "RT-p66": ["D123E", "I135V", "K166R", "D177E", "I293V", "H315Q", "I329V", "V435I"], "gp120": ["T21V", "-106W", "-107K", "N109S", "S115N", "K123-", "E125D", "T134A", "S167G", "L198I", "N202D", "K203E", "K212T", "E240K", "A253T", "N255S", "E265I", "H280-", "-282Q", "-283M", "E307K", "K309D", "K322Y", "F325Y", "N327-", "K329R"], "gp41": ["N114K", "N129G", "T133N", "E137Q", "L204V", "F206L", "L210F", "A212V", "G215E", "I222T", "D232N", "R259H", "L263F", "I281T", "A306T", "V321A", "I329V", "V334R"], "nef": ["-10R", "-11S", "P14A", "Q22R", "T23Q", "P24N", "E28A", "G29A", "Y81F", "Y135F", "M168I", "K184R", "R188L", "M194V"], "p1": ["H9N"], "p17": ["K18R", "R20Q", "K91N", "E93K", "K103R", "Y132F"], "p24": ["S41T", "T72A", "N121T", "R154K"], "p6": ["P5L", "Q26L", "P30E", "L38F", "A39T", "P49R"], "p7": ["R7N", "Q9P", "V13I", "K20R"], "pro": ["L63H"], "rev": ["K17Q", "P28L", "R50K", "S62A", "L73F", "T82S"], "tat": ["T40R", "G42A", "Y47N", "S57G", "Q63S", "H65R", "S70P", "P77S", "D80N", "S87P"], "vif": ["G33R", "F39Y", "K63R", "V98I", "D101S", "N122K", "I154V", "P156T", "K157R", "K167R", "G185E"], "vpr": ["Q77H"], "vpu": ["Q5T", "L7I", "A16T", "R41K", "A63G"]}, "labels": {"aa": "INT: K211R, A265V; RT-p51: D123E, I135V, K166R, D177E, I293V, H315Q, I329V, V435I; RT-p66: D123E, I135V, K166R, D177E, I293V, H315Q, I329V, V435I; gp120: T21V, -106W, -107K, N109S, S115N, K123-, E125D, T134A, S167G, L198I, N202D, K203E, K212T, E240K, A253T, N255S, E265I, H280-, -282Q, -283M, E307K, K309D, K322Y, F325Y, N327-, K329R; gp41: N114K, N129G, T133N, E137Q, L204V, F206L, L210F, A212V, G215E, I222T, D232N, R259H, L263F, I281T, A306T, V321A, I329V, V334R; nef: -10R, -11S, P14A, Q22R, T23Q, P24N, E28A, G29A, Y81F, Y135F, M168I, K184R, R188L, M194V; p1: H9N; p17: K18R, R20Q, K91N, E93K, K103R, Y132F; p24: S41T, T72A, N121T, R154K; p6: P5L, Q26L, P30E, L38F, A39T, P49R; p7: R7N, Q9P, V13I, K20R; pro: L63H; rev: K17Q, P28L, R50K, S62A, L73F, T82S; tat: T40R, G42A, Y47N, S57G, Q63S, H65R, S70P, P77S, D80N, S87P; vif: G33R, F39Y, K63R, V98I, D101S, N122K, I154V, P156T, K157R, K167R, G185E; vpr: Q77H; vpu: Q5T, L7I, A16T, R41K, A63G"}}}, {"name": "KY628218", "node_attrs": {"div": 0.21198000000000003, "accession": "KY628218", "clade_membership": {"value": "CRF90_BF1"}, "country": {"value": "BR"}, "date": {"value": 2007.0}, "Strain_name": {"value": "BRGO3145"}, "LANL_subtype": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A263G", "T307A", "A380G", "G406T", "A410T", "A424G", "A435G", "G519A", "T539C", "A545G", "A585G", "C586T", "G644A", "G656A", "A680G", "T728C", "T749C", "G818A", "G944T", "A1025G", "C1040T", "C1089A", "G1139A", "C1229T", "A1237T", "G1301A", "G1313A", "T1331C", "C1354G", "A1479G", "T1482G", "C1490T", "A1492G", "A1496C", "T1511C", "A1543G", "C1550T", "G1552A", "C1721T", "A1743G", "A1777G", "C1787T", "C1828T", "A2059G", "A2215T", "A2227G", "C2440T", "A2459G", "A2515G", "T2521A", "A2627C", "C2701A", "A2715C", "C2720T", "A2727G", "C2863T", "G2887A", "T2935C", "C2975A", "C2978T", "T3045C", "G3046A", "A3192G", "G3221A", "A3230T", "A3265G", "G3427A", "T3589C", "G3631A", "A3644G", "C3712T", "A3733G", "A3748G", "A3808C", "G3866A", "C3908A", "G3925A", "G3950A", "G3985A", "A3988G", "C3995A", "G3997A", "C4110T", "G4183A", "A4255C", "A4408G", "T4441A", "A4642G", "T4643G", "C4645T", "A4678T", "G4679A", "A4696C", "C4715T", "A4785G", "C4786T", "A4838G", "G4856A", "G4870C", "C4898T", "C4911T", "T4916C", "T4988G", "T5073C", "A5225G", "A5248C", "G5257A", "A5284G", "T5292C", "T5303A", "A5336G", "A5345G", "G5363A", "A5400G", "A5411G", "G5437C", "A5447G", "T5475C", "G5570A", "A5601G", "A5619G", "A5628C", "A5640T", "A5643G", "G5647A", "C5651G", "C5654T", "T5670A", "T5686G", "G5794A", "-5805G", "C5834T", "G5857A", "G5861A", "G5939A", "A5956C", "A6008G", "A6059G", "T6101C", "T6134C", "T6151C", "G6167A", "G6175C", "A6177T", "G6179A", "A6191G", "G6195A", "T6196C", "G6198A", "T6199G", "-6203G", "-6204A", "-6205G", "-6207A", "A6209G", "A6229G", "A6251G", "A6275G", "G6277A", "T6287C", "A6327C", "T6328A", "A6350G", "C6375A", "T6424C", "G6425A", "G6466A", "T6511C", "G6526A", "G6547A", "C6548T", "A6553G", "G6577T", "A6584C", "C6595T", "G6605A", "C6673T", "-6700T", "-6702C", "T6719C", "G6743A", "C6767A", "T6769C", "C6787G", "C6807T", "G6809A", "A6837C", "A6841C", "A6865T", "A6960G", "T6961C", "G6963C", "-6968G", "-6969A", "-6970C", "-6971A", "-6972C", "-6973A", "-6974A", "-6975A", "-6980A", "-6981G", "-6982C", "A6985T", "A6989G", "-6994A", "-6995A", "-6997T", "-6998A", "-6999C", "-7002A", "G7004A", "A7102T", "G7126A", "A7148G", "T7150G", "A7152G", "C7156T", "C7159T", "C7162A", "G7373A", "T7433C", "T7579C", "A7642G", "A7668G", "A7672G", "T7690C", "A7765G", "A7782G", "C7792A", "A7818G", "T7888G", "A7898G", "G7918A", "G7937A", "C7941A", "C8005A", "C8026A", "G8052A", "G8055A", "G8102A", "A8111G", "G8173A", "C8209T", "T8215G", "G8245A", "A8255G", "T8268C", "A8273G", "C8274T", "T8292G", "T8302A", "A8311C", "G8317A", "A8367-", "G8368-", "T8375-", "G8376-", "G8377-", "A8378-", "A8447G", "G8490A", "T8495C", "T8498C", "G8554A", "G8588A", "T8595G", "G8634C", "G8666T", "T8708C", "G8717A", "C8771T", "A8780G", "T8829A", "A8852G", "T8855C", "A8870C", "A8887G", "A8893C", "G8922A", "A8950T", "C8967T", "A9135G"], "INT": ["E11D", "V31I", "L45I", "M50I", "A59T", "L74I", "T112I", "K160N", "N222K"], "RT-p51": ["E40D", "K122E", "I178L", "E207A", "K211R", "P294T", "M317T", "K366R", "A376T", "S379C"], "RT-p66": ["E40D", "K122E", "I178L", "E207A", "K211R", "P294T", "M317T", "K366R", "A376T", "S379C", "I517V"], "gp120": ["A3T", "D29N", "E34D", "N52D", "K69E", "D105-", "N109W", "T110N", "N111I", "N114K", "S115T", "-116D", "-117N", "-118K", "-119T", "-120E", "-121E", "-122E", "I133V", "M141V", "Y145H", "N158T", "I166V", "T174K", "E183D", "A191T", "E241D", "I244L", "D251N", "-281T", "F289L", "E294D", "D297N", "L305I", "T308A", "N311K", "A318V", "E319K", "N328T", "K329S", "-372T", "-373D", "-376N", "N378T", "N379T", "T380-", "N432E", "N433S"], "gp41": ["V24M", "K122R", "N129S", "N160S", "D163E", "K172R", "N195K", "K199E", "A212T", "P213Q", "F241L", "R250K", "S251N", "A267T", "I270V", "I318V", "V322A", "T324V", "L330R"], "nef": ["S9-", "G12-", "P25T", "D50N", "R71K", "L85V", "E98Q", "E108D", "C163S", "E176D", "Q182R", "K184T", "Y203F"], "p17": ["G24V", "K30R", "I34V", "G62R", "T84V"], "p24": ["E71D", "H120N", "Y169F", "A208G"], "p6": ["T22A", "K33R", "S50L"], "p7": ["N5D", "F6V", "Q9R", "K11R", "K26R", "R29K"], "rev": ["V19I", "S30N", "H53N", "L60I", "C85Y", "D88G", "V109I"], "tat": ["K12R", "A21P", "N24S"], "vif": ["N19R", "T20I", "K31I", "E37A", "T67V", "R95T", "D134E"], "vpr": ["V37M", "S41G", "E48D", "I63T", "L67M"], "vpu": ["L7F", "V14I", "A15G", "A16I", "F27V", "A63T", "P76L"]}, "labels": {"aa": "INT: E11D, V31I, L45I, M50I, A59T, L74I, T112I, K160N, N222K; RT-p51: E40D, K122E, I178L, E207A, K211R, P294T, M317T, K366R, A376T, S379C; RT-p66: E40D, K122E, I178L, E207A, K211R, P294T, M317T, K366R, A376T, S379C, I517V; gp120: A3T, D29N, E34D, N52D, K69E, D105-, N109W, T110N, N111I, N114K, S115T, -116D, -117N, -118K, -119T, -120E, -121E, -122E, I133V, M141V, Y145H, N158T, I166V, T174K, E183D, A191T, E241D, I244L, D251N, -281T, F289L, E294D, D297N, L305I, T308A, N311K, A318V, E319K, N328T, K329S, -372T, -373D, -376N, N378T, N379T, T380-, N432E, N433S; gp41: V24M, K122R, N129S, N160S, D163E, K172R, N195K, K199E, A212T, P213Q, F241L, R250K, S251N, A267T, I270V, I318V, V322A, T324V, L330R; nef: S9-, G12-, P25T, D50N, R71K, L85V, E98Q, E108D, C163S, E176D, Q182R, K184T, Y203F; p17: G24V, K30R, I34V, G62R, T84V; p24: E71D, H120N, Y169F, A208G; p6: T22A, K33R, S50L; p7: N5D, F6V, Q9R, K11R, K26R, R29K; rev: V19I, S30N, H53N, L60I, C85Y, D88G, V109I; tat: K12R, A21P, N24S; vif: N19R, T20I, K31I, E37A, T67V, R95T, D134E; vpr: V37M, S41G, E48D, I63T, L67M; vpu: L7F, V14I, A15G, A16I, F27V, A63T, P76L"}}}]}]}, {"name": "CRF90_BF1_NODE_0000003", "node_attrs": {"div": 0.17029, "clade_membership": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G3334A", "C4771A", "G4861A", "T5188A", "A6932T"], "gp120": ["T360S"], "tat": ["H65R", "S68T"], "vif": ["A62D"], "vpr": ["S28R"]}, "labels": {"aa": "gp120: T360S; tat: H65R, S68T; vif: A62D; vpr: S28R"}}, "children": [{"name": "KY628216", "node_attrs": {"div": 0.20786, "accession": "KY628216", "clade_membership": {"value": "CRF90_BF1"}, "country": {"value": "BR"}, "date": {"value": 2007.0}, "Strain_name": {"value": "BRGO3047"}, "LANL_subtype": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["C201T", "G265A", "C281A", "A302T", "A303T", "T357C", "G365T", "A368C", "A374G", "T396C", "T426C", "G471A", "A530G", "A557G", "A645G", "C773A", "G818A", "G822A", "C823A", "A836G", "T861G", "T992G", "A1002G", "G1019A", "G1078C", "C1137T", "G1139A", "A1196G", "C1229T", "G1268A", "C1295T", "C1316T", "T1325C", "C1330G", "G1394A", "C1406T", "G1455A", "A1458G", "C1460A", "T1482G", "T1484C", "G1499A", "A1526G", "A1543G", "A1586G", "T1610C", "A1759G", "C1768A", "A1770G", "A1771G", "A1772G", "A1793T", "A1839G", "A1852G", "A1982G", "G2005C", "A2007G", "T2087C", "G2154A", "A2182G", "A2293G", "A2342C", "A2400G", "A2404T", "A2498G", "C2575T", "A2629G", "A2645G", "T2944A", "G3098A", "G3099A", "T3165C", "T3197C", "G3221A", "A3292G", "G3293A", "T3436C", "T3544G", "A3565G", "A3622C", "G3667A", "A3676T", "A3808G", "C3857A", "T3976C", "G3989A", "T4039C", "C4069A", "C4079T", "A4243T", "G4279A", "G4354A", "C4537T", "G4555A", "G4631A", "C4667T", "G4679T", "A4686G", "G4694A", "T4701G", "C4728A", "T4769G", "A4785G", "C4786T", "T4832A", "G4835T", "A4860G", "A4865T", "T4967G", "C4976A", "A4993C", "C5006T", "C5019T", "C5038A", "A5056G", "A5059G", "G5099A", "A5247C", "G5257C", "T5260C", "A5267G", "A5269C", "C5297A", "A5298G", "A5299C", "G5375A", "A5397C", "G5433A", "T5442C", "A5496C", "C5511T", "G5566A", "C5578A", "A5601T", "A5607G", "T5626A", "A5646G", "G5647T", "C5651T", "G5671A", "G5673T", "A5680T", "A5682T", "C5688A", "A5694G", "-5805A", "A5828T", "G5839A", "G5856A", "G5912A", "A6020T", "C6052T", "A6076C", "C6115T", "G6121A", "T6151C", "C6165G", "-6170G", "-6171T", "-6172G", "A6177C", "C6180A", "A6183T", "A6188G", "C6189G", "G6195C", "C6201A", "T6202G", "-6203G", "-6204G", "-6205G", "-6207A", "A6209G", "G6211A", "T6271C", "G6280A", "A6288C", "T6315C", "A6324G", "C6336G", "A6344G", "T6351A", "G6368A", "T6369C", "A6371C", "T6373C", "C6427T", "T6487C", "A6490C", "A6508G", "T6551G", "T6599C", "A6618G", "A6628G", "A6640C", "A6654C", "C6660T", "-6693A", "A6706C", "A6715G", "A6734G", "T6735A", "G6743A", "C6758T", "G6774A", "T6794C", "A6798T", "A6803G", "C6807T", "C6824T", "A6826C", "A6833-", "A6834-", "T6835-", "A6840G", "T6849C", "C6890T", "C6935A", "A6956T", "A6957T", "T6964C", "-6968C", "-6969T", "-6970G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975A", "T6976G", "A6978C", "T6979A", "-6983A", "A6987C", "T6988A", "A6990C", "C6991A", "-6995G", "-6997C", "-6998A", "-6999A", "-7000C", "-7002C", "T7003A", "G7004A", "-7006G", "C7008A", "A7009C", "C7012T", "A7015C", "C7087T", "A7088G", "C7124A", "T7130C", "T7150C", "A7152G", "A7155C", "A7158C", "C7164A", "C7165G", "C7171T", "G7182C", "A7237G", "A7275G", "G7276A", "A7280C", "G7291A", "A7297G", "A7303G", "C7305A", "G7426A", "G7441A", "A7553C", "C7564T", "T7565A", "A7589G", "G7658C", "T7690G", "T7692A", "A7693C", "C7702T", "A7721T", "A7722T", "G7726A", "A7732C", "G7773A", "T7774C", "A7782G", "C7801T", "A7818G", "G7831A", "G7862A", "C7912A", "G7918A", "T7921G", "A7929T", "G7937A", "C7941A", "A7995G", "C8005G", "A8036T", "C8063A", "T8113C", "G8136T", "T8145C", "G8170A", "A8180G", "T8218C", "G8219T", "C8220T", "T8227A", "C8238G", "G8242A", "G8264A", "T8268C", "T8292G", "C8294A", "C8296T", "G8323A", "-8369G", "-8370C", "-8371T", "-8372G", "-8373G", "-8374G", "C8382T", "A8407G", "T8440C", "G8441A", "A8459G", "A8469C", "T8471C", "G8476C", "C8477T", "C8504T", "T8505G", "T8546C", "A8555G", "A8573G", "C8590G", "A8597G", "T8646C", "A8652C", "A8660G", "G8666C", "T8675C", "G8682A", "C8684T", "C8720T", "A8735C", "G8784A", "G8787A", "A8788G", "G8798T", "A8801G", "A8837G", "A8869G", "G8875A", "G8882A", "C8886G", "A8887T", "A8893G", "A8909C", "G8924A", "C8960A", "T9074G", "G9095T", "T9097C", "C9108T", "T9115C", "A9131G"], "INT": ["L28I", "V72I", "K156N", "D286N"], "RT-p51": ["R20K", "K102R", "K103N", "I135V", "I178M", "M184V", "G335N", "M357T", "A376T"], "RT-p66": ["R20K", "K102R", "K103N", "I135V", "I178M", "M184V", "G335N", "M357T", "A376T", "H483Q", "Q509H", "K527N"], "gp120": ["R1K", "D5N", "A20T", "I56L", "E74D", "T104S", "-106V", "-107M", "N108P", "N109D", "T110I", "T112G", "N114T", "-116K", "-117G", "-118E", "-119E", "-120M", "Y145S", "V154A", "D157G", "T161R", "T164A", "I166K", "V172T", "I173L", "K212N", "L233V", "F249L", "N255S", "E262D", "N267T", "T269I", "D297N", "H302Y", "T308A", "K315I", "I317V", "A318V", "K322R", "Q324Y", "N327-", "K329R", "V332A", "H346Y", "Q361K", "-368F", "-372L", "-373N", "N375T", "-376T", "-377T", "N378D", "-381K", "-382N", "D384-", "T385-", "S412G", "L424M", "N433S", "N434T", "N435T", "E436D", "T437K", "G443A", "K474R"], "gp41": ["A1E", "T4M", "I84L", "S88T", "T96A", "E119Q", "N129R", "L130Y", "N140F", "E143D", "S157N", "N160S", "K172R", "M176I", "V187I", "F206L", "H209L", "A212T", "P213Q", "K231R", "I245F", "L254I", "G278V", "I281T", "S293G", "A306F", "A312G", "V321I", "V322A", "L330R", "H331N"], "nef": ["S9R", "-10L", "-11G", "P14S", "Q22R", "V33A", "I43L", "S45T", "L55V", "A83G", "Y102H", "K104Q", "E108D", "V114I", "V148I", "D149S", "E152D", "E176G", "R178K", "Q182V", "K184R", "M194V"], "p17": ["V46I", "K91R", "I104V"], "p2": ["A11T", "T12A"], "p24": ["A31N", "S44A", "H87Q", "I91V", "M96I", "G116A", "S178T", "T200S"], "p6": ["K27R", "P30Q", "K31G", "L38F"], "p7": ["F6V", "K26R"], "pro": ["K14R", "I62V", "Q69H", "K70R"], "rev": ["S30N", "H53D", "Y63F", "P72H", "C89R", "A108T", "E111G"], "tat": ["R7S", "T39I", "A64T", "T74S"], "vif": ["K31N", "K34E", "F39V", "H48N", "D61E", "T67V", "Q83H", "R92E", "R93S", "H127Q", "S130R", "Q136P", "T151K", "Q155K", "K157R", "K158R"], "vpr": ["V37T", "E48A", "T55A", "Q65S"], "vpu": ["L7I", "V14L", "A15V", "V22I", "I25F", "F27L", "H74L", "D78N"]}, "labels": {"aa": "INT: L28I, V72I, K156N, D286N; RT-p51: R20K, K102R, K103N, I135V, I178M, M184V, G335N, M357T, A376T; RT-p66: R20K, K102R, K103N, I135V, I178M, M184V, G335N, M357T, A376T, H483Q, Q509H, K527N; gp120: R1K, D5N, A20T, I56L, E74D, T104S, -106V, -107M, N108P, N109D, T110I, T112G, N114T, -116K, -117G, -118E, -119E, -120M, Y145S, V154A, D157G, T161R, T164A, I166K, V172T, I173L, K212N, L233V, F249L, N255S, E262D, N267T, T269I, D297N, H302Y, T308A, K315I, I317V, A318V, K322R, Q324Y, N327-, K329R, V332A, H346Y, Q361K, -368F, -372L, -373N, N375T, -376T, -377T, N378D, -381K, -382N, D384-, T385-, S412G, L424M, N433S, N434T, N435T, E436D, T437K, G443A, K474R; gp41: A1E, T4M, I84L, S88T, T96A, E119Q, N129R, L130Y, N140F, E143D, S157N, N160S, K172R, M176I, V187I, F206L, H209L, A212T, P213Q, K231R, I245F, L254I, G278V, I281T, S293G, A306F, A312G, V321I, V322A, L330R, H331N; nef: S9R, -10L, -11G, P14S, Q22R, V33A, I43L, S45T, L55V, A83G, Y102H, K104Q, E108D, V114I, V148I, D149S, E152D, E176G, R178K, Q182V, K184R, M194V; p17: V46I, K91R, I104V; p2: A11T, T12A; p24: A31N, S44A, H87Q, I91V, M96I, G116A, S178T, T200S; p6: K27R, P30Q, K31G, L38F; p7: F6V, K26R; pro: K14R, I62V, Q69H, K70R; rev: S30N, H53D, Y63F, P72H, C89R, A108T, E111G; tat: R7S, T39I, A64T, T74S; vif: K31N, K34E, F39V, H48N, D61E, T67V, Q83H, R92E, R93S, H127Q, S130R, Q136P, T151K, Q155K, K157R, K158R; vpr: V37T, E48A, T55A, Q65S; vpu: L7I, V14L, A15V, V22I, I25F, F27L, H74L, D78N"}}}, {"name": "CRF90_BF1_NODE_0000004", "node_attrs": {"div": 0.17581, "clade_membership": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G614C", "G1419A", "G1794A", "A1804G", "C1853T", "C2075A", "A2241G", "C2626A", "A2925G", "A2951G", "G3796A", "A4148G", "T4498C", "G4695A", "A4774G", "G5131A", "A5213C", "T5263C", "C5614A", "T5629G", "C5651G", "A5659T", "A5734C", "-5805G", "G5866T", "C6189A", "T6202A", "-6218G", "G6220A", "G6266A", "G6638A", "A6798G", "G6819A", "-6975C", "A6977G", "-7006T", "A7090T", "G7160A", "G7450A", "G7689A", "A7722C", "A7765G", "G7846A", "T7921C", "C7939A", "C7940G", "A8009C", "C8274T", "T8280G", "G8354A", "C8676T", "G8817A", "A8827G", "C8934A"], "INT": ["T125A"], "RT-p51": ["K49R", "D123E", "D177E", "K277R", "T286A"], "RT-p66": ["K49R", "D123E", "D177E", "K277R", "T286A"], "gp120": ["D105N", "G138R", "K261N", "K315R", "E436N"], "gp41": ["N140T", "T324I", "F326C"], "nef": ["E38D", "N162S"], "p17": ["E93D"], "p24": ["I15L", "V230I"], "p6": ["A39T", "K42R"], "pro": ["L93I"], "rev": ["K54T"], "tat": ["P77Q"], "vif": ["E37K", "K63R", "G182D"], "vpr": ["V37P"], "vpu": ["P3T", "S8A", "A15G", "I18L", "I43L"]}, "labels": {"aa": "INT: T125A; RT-p51: K49R, D123E, D177E, K277R, T286A; RT-p66: K49R, D123E, D177E, K277R, T286A; gp120: D105N, G138R, K261N, K315R, E436N; gp41: N140T, T324I, F326C; nef: E38D, N162S; p17: E93D; p24: I15L, V230I; p6: A39T, K42R; pro: L93I; rev: K54T; tat: P77Q; vif: E37K, K63R, G182D; vpr: V37P; vpu: P3T, S8A, A15G, I18L, I43L"}}, "children": [{"name": "KY628225", "node_attrs": {"div": 0.21291, "accession": "KY628225", "clade_membership": {"value": "CRF90_BF1"}, "country": {"value": "BR"}, "date": {"value": 2009.0}, "Strain_name": {"value": "BRTO10_66"}, "LANL_subtype": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200G", "G224A", "A263G", "G265A", "C281A", "-304A", "-305A", "G369C", "A417C", "A425G", "G455A", "A530G", "A548T", "G629A", "C773A", "A774T", "A810G", "A833G", "C845T", "T1001A", "T1091C", "C1103T", "A1124G", "T1181C", "A1250G", "C1264G", "G1271T", "G1313T", "A1367G", "C1439T", "G1443A", "G1472A", "G1474A", "G1487A", "A1587C", "A1618G", "C1646T", "A1670G", "G1673A", "C1680G", "G1685A", "C1693T", "G1697A", "A1715G", "C1767A", "A1772G", "G1778A", "A1781C", "C1790T", "C1826A", "A1835G", "A1841G", "T1986A", "C1987A", "C2063T", "G2074A", "T2087C", "G2248A", "G2311A", "T2386A", "C2464G", "C2488T", "T2499C", "A2557G", "G2560A", "A2579G", "G2580C", "A2593G", "C2644T", "A2677G", "A2734G", "T2758C", "A2764G", "T2788A", "T2829A", "G2847A", "T2857C", "G2914A", "A3025G", "T3118A", "A3124G", "T3139C", "G3142A", "A3224C", "C3225T", "A3230G", "G3298T", "T3299G", "A3302G", "C3352T", "C3504A", "G3506A", "C3508T", "T3526A", "A3616G", "G3631A", "C3668T", "C3688T", "C3751T", "A3808C", "C3823T", "A3825C", "C3843T", "A3859G", "G3866A", "T3889C", "G3925T", "T3946C", "C3995T", "G4046T", "A4063C", "A4130C", "G4131C", "C4140T", "C4210T", "A4255G", "G4279A", "A4391T", "A4642G", "T4670C", "G4689A", "A4693G", "C4724T", "C4726A", "G4735A", "G4764A", "G4765A", "A4781G", "A4865T", "C4889A", "A4968G", "G4995A", "A5046G", "C5052A", "A5055C", "A5059G", "A5086G", "G5087A", "A5128G", "T5171C", "A5215T", "A5225G", "T5228A", "A5282C", "T5286C", "T5313C", "C5356T", "G5370T", "C5398T", "G5426A", "G5427A", "T5442C", "A5447C", "T5448A", "A5462G", "G5463T", "A5493G", "A5537C", "C5551T", "C5554A", "C5563A", "A5565G", "A5574G", "C5578A", "A5601G", "A5613G", "T5626G", "T5627C", "G5644A", "G5647A", "T5687A", "G5699A", "A5718G", "C5756A", "A5784G", "A5790G", "C5797A", "G5800A", "C5824T", "C5862A", "A5863C", "G5864A", "A5865C", "A5867G", "C5920T", "G5954A", "T5964C", "T6024C", "G6029C", "A6030C", "A6059G", "T6091C", "A6130T", "T6134C", "C6163T", "T6166-", "G6167-", "A6168-", "T6169-", "A6173-", "T6174-", "G6179C", "T6181A", "A6183C", "T6190G", "A6192T", "G6195C", "A6197G", "G6198A", "T6199G", "G6206-", "A6210T", "-6214A", "-6215C", "-6216T", "-6217A", "-6219A", "A6223G", "G6225A", "G6232A", "C6241T", "T6242A", "T6244C", "G6267A", "C6305T", "T6306C", "G6311A", "G6329-", "A6330-", "T6331-", "A6332-", "A6333-", "T6334-", "A6342T", "C6382A", "G6392A", "T6393C", "T6438A", "T6460C", "A6465C", "G6466A", "C6477A", "A6490T", "G6535A", "G6547A", "C6548T", "G6550A", "C6594A", "G6605A", "G6637T", "C6641A", "A6648T", "T6688-", "A6689-", "T6690-", "A6691-", "C6692-", "G6697A", "-6698C", "-6699A", "-6700C", "-6701C", "-6702T", "-6703A", "T6721C", "A6734G", "T6735A", "G6773A", "C6777T", "A6779C", "A6801T", "A6811G", "A6823G", "T6838A", "A6840C", "T6863A", "C6892T", "T6916C", "A6959-", "A6960-", "T6961-", "A6962-", "G6963-", "T6964-", "A6965-", "C6966-", "T6967-", "-6971A", "-6972G", "-6973C", "-6974A", "-6980A", "-6981G", "-6982C", "-6983A", "A6990G", "T6994A", "-6995A", "-6997T", "-6998A", "-6999G", "-7000C", "-7002C", "T7003A", "C7008A", "C7012T", "C7024T", "A7032G", "C7094A", "A7151G", "C7153G", "C7159A", "G7291A", "A7315G", "G7333T", "G7492A", "G7519A", "T7555G", "T7561A", "A7623G", "T7626A", "A7628G", "G7629A", "G7640A", "G7666A", "A7668G", "T7691A", "A7700T", "C7706A", "G7735A", "G7773A", "G7777A", "C7801A", "A7929G", "C7931T", "G7987C", "A7996C", "G7997A", "A8036T", "A8150C", "A8151G", "T8176C", "T8215G", "A8241G", "G8245A", "T8265C", "C8270A", "A8271G", "A8273G", "T8292G", "C8296T", "G8303A", "T8304G", "G8323T", "T8348G", "T8366C", "A8367-", "G8368-", "T8375-", "G8376-", "G8377-", "A8378-", "C8415T", "A8456T", "C8460A", "G8476C", "C8504T", "G8534T", "T8582C", "A8584G", "T8585G", "C8606T", "C8684T", "T8740C", "C8741T", "A8750C", "C8751A", "G8753A", "A8792G", "T8825C", "A8844T", "C8960A", "C8966T", "C8967T", "G8970A", "C8978T", "C9017G", "G9037A", "G9095A", "A9131G", "G9132A", "A9135G"], "INT": ["E11D", "N17T", "A23V", "V31I", "M50I", "A91S", "E96D", "S119P", "T122I", "T206S"], "RT-p51": ["I135T", "S162A", "V245E", "S251N", "T377L", "S379G", "T400A", "W401C", "W402G", "T403A"], "RT-p66": ["I135T", "S162A", "V245E", "S251N", "T377L", "S379G", "T400A", "W401C", "W402G", "T403A", "D471N"], "gp120": ["A3D", "E4T", "E34K", "V37A", "I56M", "V57A", "E59P", "K69E", "-106P", "-107T", "N109K", "N111E", "G124E", "M126I", "S130T", "R138K", "L151S", "V153I", "D159-", "N160-", "Y163F", "V180T", "F195Y", "K204T", "T208K", "K212N", "A247D", "D251N", "E262K", "P263T", "E265V", "M281L", "E307R", "T308V", "K309Q", "Q316L", "N328K", "K329T", "S337T", "-372D", "-373S", "-376S", "-377T", "N379S", "T385K", "K393R", "L414I", "N433E", "N435K"], "gp41": ["I84M", "N107S", "L108Q", "S109D", "D113N", "K122R", "L130I", "T133S", "L135I", "S157N", "N166K", "H209R", "L210F", "E228D", "K231N", "D232N", "I245F", "K283R", "E313G", "V321A", "Q323R", "I324V", "L330R", "V334R", "L340F"], "nef": ["S9-", "G12-", "P25V", "S45T", "Y81W", "I133T", "L137I", "G159R", "M168L", "M194V", "L198M"], "p17": ["E12Q", "K28Q", "K91R"], "p2": ["V7M"], "p24": ["I27V", "E180D"], "p6": ["L1V", "P5L", "P30T", "E34D"], "p7": ["R3K", "K41Q", "E51G"], "pro": ["L10I", "I13V", "I15V", "L63Q"], "rev": ["S8R", "E10D", "V11E", "K17R", "K20R", "E47Q", "R50Q", "Y63F", "Q101P"], "tat": ["R17Q", "N24T", "K29S", "T39M", "Q54P", "S57R", "P59S", "P60T", "Q63K"], "vif": ["N19S", "A35T", "K36R", "P47H", "R50K", "G60K", "R92K", "R93S", "D101E", "I128V", "A137T", "I154V", "Q155K", "P156T", "K157Q", "K158R", "K167R", "K181R"], "vpr": ["S41G", "L42I", "I60L", "I61T", "I70T", "T84I", "A89S"], "vpu": ["L7A", "V13I", "V14I", "F27Y", "R31K", "A50E", "L64I", "V65M", "-69Y", "H73-"]}, "labels": {"aa": "INT: E11D, N17T, A23V, V31I, M50I, A91S, E96D, S119P, T122I, T206S; RT-p51: I135T, S162A, V245E, S251N, T377L, S379G, T400A, W401C, W402G, T403A; RT-p66: I135T, S162A, V245E, S251N, T377L, S379G, T400A, W401C, W402G, T403A, D471N; gp120: A3D, E4T, E34K, V37A, I56M, V57A, E59P, K69E, -106P, -107T, N109K, N111E, G124E, M126I, S130T, R138K, L151S, V153I, D159-, N160-, Y163F, V180T, F195Y, K204T, T208K, K212N, A247D, D251N, E262K, P263T, E265V, M281L, E307R, T308V, K309Q, Q316L, N328K, K329T, S337T, -372D, -373S, -376S, -377T, N379S, T385K, K393R, L414I, N433E, N435K; gp41: I84M, N107S, L108Q, S109D, D113N, K122R, L130I, T133S, L135I, S157N, N166K, H209R, L210F, E228D, K231N, D232N, I245F, K283R, E313G, V321A, Q323R, I324V, L330R, V334R, L340F; nef: S9-, G12-, P25V, S45T, Y81W, I133T, L137I, G159R, M168L, M194V, L198M; p17: E12Q, K28Q, K91R; p2: V7M; p24: I27V, E180D; p6: L1V, P5L, P30T, E34D; p7: R3K, K41Q, E51G; pro: L10I, I13V, I15V, L63Q; rev: S8R, E10D, V11E, K17R, K20R, E47Q, R50Q, Y63F, Q101P; tat: R17Q, N24T, K29S, T39M, Q54P, S57R, P59S, P60T, Q63K; vif: N19S, A35T, K36R, P47H, R50K, G60K, R92K, R93S, D101E, I128V, A137T, I154V, Q155K, P156T, K157Q, K158R, K167R, K181R; vpr: S41G, L42I, I60L, I61T, I70T, T84I, A89S; vpu: L7A, V13I, V14I, F27Y, R31K, A50E, L64I, V65M, -69Y, H73-"}}}, {"name": "KY628219", "node_attrs": {"div": 0.20521, "accession": "KY628219", "clade_membership": {"value": "CRF90_BF1"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "BRG04141"}, "LANL_subtype": {"value": "CRF90_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "A220G", "C258T", "A303T", "T396C", "G407T", "A410T", "A411T", "A412T", "G413C", "A423C", "T495G", "G562A", "A585G", "C586T", "G607A", "C746T", "A774C", "A776G", "G818A", "A899G", "C947A", "G1016A", "A1199G", "A1412G", "G1503A", "A1543G", "T1574C", "T1628A", "C1658A", "A1745G", "G1769A", "C1775G", "A1857G", "G1858A", "G1906A", "G1981A", "A1982G", "C1985A", "C1987G", "G1988A", "T2062C", "T2080G", "A2128G", "A2215T", "A2224G", "A2293G", "T2338C", "A2374G", "C2440T", "T2449G", "C2464A", "A2716C", "G2828A", "G2830A", "A2872G", "T2890C", "G2984A", "G3019A", "G3043A", "G3046A", "G3154A", "G3211A", "A3238G", "A3264G", "G3293A", "C3303T", "G3385A", "T3497C", "G3685A", "C3857A", "A3877G", "T3898C", "C3995A", "T4018C", "T4039C", "G4156A", "A4273G", "C4543T", "C4569T", "T4655C", "A4811G", "G4835A", "G4862C", "A4871C", "G4887A", "C4955T", "A4956C", "A4966G", "C4976A", "T4988A", "A5015G", "G5024A", "A5049C", "G5179A", "A5188G", "T5251A", "T5303A", "A5335T", "A5336C", "T5357A", "A5431G", "T5448C", "T5472A", "T5492C", "C5495A", "C5514A", "T5584C", "T5604C", "T5626C", "G5729A", "T5739A", "A5746G", "G5747C", "G5842A", "G5845A", "G5856A", "G5857A", "G5861A", "A5881T", "G6022A", "C6052T", "A6065G", "C6067T", "A6076C", "G6079A", "C6110G", "G6167A", "-6170A", "-6171T", "-6172T", "G6175T", "G6179A", "C6180A", "A6186C", "A6200C", "C6201A", "-6203G", "-6204G", "-6205G", "-6207G", "A6209G", "-6214G", "-6215G", "-6216A", "-6217G", "-6219G", "A6333C", "C6382T", "G6403T", "G6425A", "C6427T", "A6458G", "A6475T", "A6481G", "A6489G", "A6508G", "A6525G", "A6584C", "G6611A", "A6623C", "G6637C", "A6639C", "C6641T", "A6664G", "A6668C", "-6693A", "G6712A", "C6726T", "T6763C", "C6767A", "C6777A", "G6806A", "-6830A", "-6831A", "-6832T", "T6835A", "C6850A", "A6855G", "G6884A", "T6885C", "A6900T", "G6910A", "C6951G", "A6957C", "T6958G", "A6962G", "-6968T", "-6969G", "-6970G", "T6979A", "C6984-", "A6985-", "A6986-", "A6987-", "C6991T", "-6995T", "A6996G", "-6997G", "-6998C", "-6999T", "-7000G", "-7002A", "A7009T", "C7014T", "A7056G", "C7094G", "A7148G", "T7150G", "A7155C", "A7297G", "G7307A", "G7309A", "T7314C", "G7390A", "G7426A", "C7498T", "A7644G", "A7646C", "G7648A", "A7688G", "T7690A", "A7714T", "A7782C", "T7796A", "G7862A", "T7865C", "T7932C", "G7937A", "C8005G", "A8011T", "A8029C", "C8048T", "G8055A", "C8063A", "C8106A", "T8206C", "G8208A", "G8219A", "C8223T", "A8224C", "T8227C", "A8255G", "T8277C", "T8304C", "G8317A", "G8330C", "C8331T", "-8369T", "-8370A", "-8371T", "-8372A", "-8373G", "-8374T", "G8388A", "A8405G", "C8415G", "C8416G", "A8417G", "G8429A", "G8432A", "A8435G", "A8456C", "G8487A", "C8488G", "G8490A", "A8531T", "G8537A", "A8540T", "C8552T", "C8590G", "C8603A", "C8609T", "A8643G", "G8682A", "G8738A", "T8747C", "G8795-", "G8796-", "A8797-", "G8798-", "G8799-", "T8800-", "A8804G", "A8805G", "C8809G", "C8810A", "A8811G", "T8813G", "G8814A", "A8816T", "A8819T", "C8835T", "A8844G", "T8864G", "A8870G", "G8882A", "G8885A", "G8922A", "T8935A", "A8947T", "G8954A", "A8955G", "C9028T", "G9030A"], "INT": ["L28I", "L74M", "A265V"], "RT-p51": ["E40D", "E207D", "V245I", "E297K", "K390R", "T403I"], "RT-p66": ["E40D", "E207D", "V245I", "E297K", "K390R", "T403I", "S468P"], "gp120": ["R1K", "A3T", "E4D", "D5N", "N71D", "E74D", "Q86E", "-106I", "-107I", "T110-", "-116S", "-117Q", "-118G", "-119G", "-120E", "-121M", "-122E", "N160T", "E183D", "A191T", "N202D", "K212R", "K224R", "I244L", "A253T", "I257L", "E262T", "P263S", "N272H", "Y290V", "A291T", "T292G", "G293E", "E294I", "L305I", "E307G", "T308E", "A318T", "-326N", "N327K", "N334S", "V344T", "N349I", "T366S", "-368T", "S370G", "-372W", "T374-", "N378-", "-381W", "-382L", "-383N", "T387I", "E401G", "L414V", "N434T"], "gp41": ["V2I", "N114S", "M115L", "N129E", "E137D", "N160T", "S165T", "V187I", "F188L", "L210P", "A212T", "P213A", "L242F", "S251N", "L254I", "A268E", "S302N", "A306T", "T307I", "I318V", "I325T", "V334A", "A343L"], "nef": ["-10I", "-11V", "V16I", "P25G", "A49R", "A50T", "E63D", "A83G", "I101V", "V114I", "E152-", "V153-", "K155E", "A156G", "N157E", "E158N", "G159S", "M168V", "D174E", "L198K", "Y202F", "N205D", "*206C"], "p1": ["H9Q"], "p17": ["K26F", "K30Q", "S54A", "R76K", "T84V"], "p24": ["S178T"], "p6": ["D32E"], "p7": ["V13I", "K26R"], "pro": ["K20R", "M36I", "I62V", "L63M", "V64I"], "rev": ["S30N", "P31S", "H53D", "I55F", "S61R", "P67L", "P72H", "S86R"], "tat": ["K19E", "F32L", "T40K", "T68P", "S70P", "S75P"], "vif": ["R92N", "R95S", "D101N", "I124L", "H127R", "S130R", "D134E"], "vpr": ["L67M", "Q77L"], "vpu": ["R41K", "D44E", "R47A", "V79I", "D80N"]}, "labels": {"aa": "INT: L28I, L74M, A265V; RT-p51: E40D, E207D, V245I, E297K, K390R, T403I; RT-p66: E40D, E207D, V245I, E297K, K390R, T403I, S468P; gp120: R1K, A3T, E4D, D5N, N71D, E74D, Q86E, -106I, -107I, T110-, -116S, -117Q, -118G, -119G, -120E, -121M, -122E, N160T, E183D, A191T, N202D, K212R, K224R, I244L, A253T, I257L, E262T, P263S, N272H, Y290V, A291T, T292G, G293E, E294I, L305I, E307G, T308E, A318T, -326N, N327K, N334S, V344T, N349I, T366S, -368T, S370G, -372W, T374-, N378-, -381W, -382L, -383N, T387I, E401G, L414V, N434T; gp41: V2I, N114S, M115L, N129E, E137D, N160T, S165T, V187I, F188L, L210P, A212T, P213A, L242F, S251N, L254I, A268E, S302N, A306T, T307I, I318V, I325T, V334A, A343L; nef: -10I, -11V, V16I, P25G, A49R, A50T, E63D, A83G, I101V, V114I, E152-, V153-, K155E, A156G, N157E, E158N, G159S, M168V, D174E, L198K, Y202F, N205D, *206C; p1: H9Q; p17: K26F, K30Q, S54A, R76K, T84V; p24: S178T; p6: D32E; p7: V13I, K26R; pro: K20R, M36I, I62V, L63M, V64I; rev: S30N, P31S, H53D, I55F, S61R, P67L, P72H, S86R; tat: K19E, F32L, T40K, T68P, S70P, S75P; vif: R92N, R95S, D101N, I124L, H127R, S130R, D134E; vpr: L67M, Q77L; vpu: R41K, D44E, R47A, V79I, D80N"}}}]}]}]}, {"name": "results/subtype_trees/B.nwk", "node_attrs": {"div": 0.13920000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T897C", "G1173A", "T1174C", "A1205G", "A1263T", "A1562G", "G1664A", "A1687G", "A1771T", "C1787T", "A1920G", "T1986C", "G2714C", "A3562G", "A3814G", "G3989A", "G4145A", "A4642G", "C4643A", "T4665C", "A4778G", "G4782A", "C4976T", "T4988A", "A5037G", "A5086C", "G6266A", "G6605A", "-6974A", "G7004-", "A7589G", "T7796A", "T8277C", "A8409G", "T8440C", "C8504T", "C8543T", "G8666T", "C8789G", "A8870G", "C8883T"], "INT": ["V72I"], "RT-p51": ["E207Q"], "RT-p66": ["E207Q"], "gp120": ["D251N", "S412R"], "gp41": ["A151E", "S165T"], "nef": ["T23A", "V33A", "E108D", "D149E", "E152K"], "p17": ["K30R"], "p24": ["V148T"], "p6": ["N3S", "K31I"], "pro": ["K41R"], "vif": ["N19R", "Y27H", "V66I", "R95S", "D134E", "K167T"]}, "labels": {"aa": "INT: V72I; RT-p51: E207Q; RT-p66: E207Q; gp120: D251N, S412R; gp41: A151E, S165T; nef: T23A, V33A, E108D, D149E, E152K; p17: K30R; p24: V148T; p6: N3S, K31I; pro: K41R; vif: N19R, Y27H, V66I, R95S, D134E, K167T", "clade": "B"}}, "children": [{"name": "B_NODE_0000001", "node_attrs": {"div": 0.14149, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C749T", "G771C", "A1397G", "G4174A", "T5686C", "A5867C", "G6179A", "-6995G", "G7689A", "A7765G", "G7918A", "A7929G", "A8796C", "G8954A"], "RT-p51": ["T400A"], "RT-p66": ["T400A"], "gp120": ["K5Q", "R138K"], "nef": ["N51T", "K152Q"], "p24": ["A14P"], "tat": ["T74A"]}, "labels": {"aa": "RT-p51: T400A; RT-p66: T400A; gp120: K5Q, R138K; nef: N51T, K152Q; p24: A14P; tat: T74A"}}, "children": [{"name": "B_NODE_0000002", "node_attrs": {"div": 0.14291, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G379A", "A1543G", "A2951G", "G2972A", "A3808C", "T4832C", "A5213G", "A6206G", "A6489C", "A6605G", "G6647A", "-6977G", "T6994-", "T7003-", "C7008-", "C7153T"], "RT-p51": ["T286A", "V293I"], "RT-p66": ["T286A", "V293I"], "gp120": ["K212T", "N251D", "R416T"], "gp41": ["T133N"], "nef": ["R178K"], "p17": ["R15K"], "p7": ["K26R"], "rev": ["L18I"], "tat": ["D61N"]}, "labels": {"aa": "RT-p51: T286A, V293I; RT-p66: T286A, V293I; gp120: K212T, N251D, R416T; gp41: T133N; nef: R178K; p17: R15K; p7: K26R; rev: L18I; tat: D61N"}}, "children": [{"name": "B_NODE_0000003", "node_attrs": {"div": 0.15279, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T668C", "A685C", "T988C", "T992G", "G1328A", "A1835G", "A1841G", "C2075A", "G2198A", "T2199C", "A2368G", "T2369C", "A2755G", "G3091A", "T3253C", "A3280G", "G3340A", "C3499T", "G3562A", "T3602C", "G3643A", "C3857A", "G3907A", "T4042C", "G4279A", "G4642A", "T4952A", "A5046C", "A5159G", "A5200G", "C5356T", "G5370A", "G5433A", "T5466C", "C5602T", "-5804A", "-5806A", "-5807T", "-5809G", "-5810G", "C5958G", "T6151C", "-6180A", "-6205G", "-6214A", "G6267A", "A6275G", "G6277A", "G6354A", "G6458A", "A6465C", "A6471G", "C6477A", "A6595C", "G6604A", "T6637G", "T6641G", "A6682G", "A6684G", "A6767C", "G6776A", "G6910A", "-6975C", "-6978A", "-6979A", "-6981A", "-6983T", "-6994A", "-6996A", "C7094A", "C7164A", "C7463A", "G7628A", "C7701A", "A7713T", "G7753A", "G7759A", "A7915G", "C8009A"], "RT-p51": ["V35T"], "RT-p66": ["V35T"], "gp120": ["T35R", "M141V", "S167N", "D202N", "K204T", "N206S", "T208K", "E247D", "N261K", "S263A", "K277R", "I305L", "-328N", "V332I", "Q414N", "T437N"], "gp41": ["L54M", "E137V", "H209R"], "p17": ["Q117P"], "p24": ["H87Q", "E98D"], "pro": ["I13V", "I15V", "L93I"], "vif": ["N122K", "I154L"], "vpr": ["T19A", "T84I", "A89T"], "vpu": ["I18L"]}, "labels": {"aa": "RT-p51: V35T; RT-p66: V35T; gp120: T35R, M141V, S167N, D202N, K204T, N206S, T208K, E247D, N261K, S263A, K277R, I305L, -328N, V332I, Q414N, T437N; gp41: L54M, E137V, H209R; p17: Q117P; p24: H87Q, E98D; pro: I13V, I15V, L93I; vif: N122K, I154L; vpr: T19A, T84I, A89T; vpu: I18L"}}, "children": [{"name": "DQ322223", "node_attrs": {"div": 0.19657000000000002, "accession": "DQ322223", "clade_membership": {"value": "B"}, "country": {"value": "CA"}, "Strain_name": {"value": "GOL016V01"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G369A", "A423C", "A428C", "G438A", "A440G", "A470G", "A500C", "C510A", "G520T", "A541C", "A551G", "A606G", "A619G", "G644A", "A645G", "C679A", "C688T", "G716C", "C731T", "G740A", "C747T", "T749A", "G944A", "T978A", "G987C", "A1025C", "C1060A", "A1090G", "A1097G", "A1101G", "T1148C", "A1151G", "C1229T", "A1241G", "C1245T", "A1278C", "C1316T", "A1367G", "G1397A", "T1409C", "A1433C", "A1442G", "T1451C", "C1456G", "C1459A", "G1532A", "A1544G", "G1562A", "C1598T", "T1613C", "A1743C", "C1747T", "T1748G", "G1779A", "A1781C", "C1782A", "T1790C", "A1804G", "A1818G", "C1850A", "A1851T", "A1857G", "G1920A", "A1962G", "C1986A", "A1988G", "T2080C", "C2083T", "T2101A", "G2134A", "A2152T", "A2197G", "A2210G", "G2230A", "A2233G", "A2241G", "A2254G", "C2281A", "C2420T", "T2434C", "T2453C", "T2497C", "A2500G", "A2519G", "C2596A", "G2683A", "A2752G", "T2788A", "G2828A", "T2829A", "A2840C", "C2909G", "G2957T", "C2978T", "G2984A", "A3043G", "G3046T", "A3080C", "A3082G", "C3140T", "G3221A", "C3252T", "A3264G", "A3283G", "G3293A", "G3307T", "T3450C", "G3491A", "T3497C", "C3500A", "A3502G", "C3545T", "T3559C", "T3567C", "A3574G", "A3616G", "G3617T", "A3650G", "G3664A", "A3736G", "G3737A", "C3751A", "G3755A", "C3756A", "G3766A", "A3781G", "C3856T", "G3859A", "G3884A", "G3925A", "A3989G", "A4021G", "C4129A", "A4130G", "C4132T", "C4140T", "A4181C", "C4195A", "T4198C", "A4255G", "G4294A", "A4315G", "G4376A", "A4391T", "T4471C", "A4474C", "C4543A", "G4555A", "A4625G", "G4631A", "G4684A", "T4701A", "G4708A", "C4726A", "C4728A", "T4738C", "G4861A", "A4865G", "G4887A", "T4938A", "T4976C", "G4982T", "A4987C", "A4993C", "A5059G", "A5121G", "C5149T", "A5215C", "T5239C", "T5251C", "T5260C", "A5282T", "A5285C", "T5293G", "T5313C", "A5360G", "G5427A", "A5446C", "A5447C", "T5471A", "A5493G", "G5548C", "A5555C", "G5557A", "C5567A", "G5599A", "T5617C", "C5620T", "A5622C", "T5627C", "A5659C", "C5679T", "A5718G", "G5775A", "T5788C", "A5790C", "-5800G", "-5805G", "-5812C", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5851T", "G5861A", "A5950T", "G5962A", "T5964C", "A6008C", "G6023A", "T6024G", "A6030G", "C6052T", "A6065G", "T6160G", "C6165A", "G6167A", "-6170A", "-6171C", "-6172T", "A6173G", "A6174C", "-6175C", "C6183G", "C6189G", "A6200G", "G6201T", "T6202A", "-6203G", "-6204A", "-6207G", "-6210A", "-6211G", "-6212A", "-6213T", "G6218-", "G6220-", "A6226G", "A6273G", "T6298C", "A6304C", "G6311A", "C6361T", "T6395A", "G6403A", "G6430A", "A6450G", "T6457C", "G6466A", "C6496T", "C6548T", "T6562C", "C6619T", "A6649C", "A6654C", "C6667T", "A6668G", "A6669G", "A6679G", "A6693C", "-6697G", "G6725A", "A6780G", "A6781C", "A6791G", "T6793C", "A6799T", "T6804C", "A6810T", "A6811C", "G6848A", "C6874T", "C6876T", "A6929G", "C6930T", "C6935G", "T6958-", "A6962G", "T6964A", "-6972G", "-6973A", "T6976A", "-6980T", "-6982G", "A6986-", "A6987-", "T6988-", "A6989-", "A6992C", "-6997A", "-6998T", "-6999G", "-7000A", "-7003G", "-7004G", "-7005A", "-7006T", "-7008C", "-7009T", "A7096T", "G7101C", "A7102T", "A7132G", "T7147A", "T7150C", "A7154G", "C7156G", "A7158G", "T7159C", "G7160A", "A7161C", "C7165T", "G7168A", "T7217C", "A7241C", "G7291A", "G7375A", "T7403C", "A7428G", "G7441A", "G7453A", "G7492A", "C7625A", "A7629G", "T7675C", "G7676A", "C7678T", "C7690A", "T7691C", "T7692A", "C7702A", "G7712A", "G7726A", "A7747C", "T7789C", "G7790A", "A7791G", "A7819G", "C7825T", "A7847G", "G7868A", "T7913C", "C7935A", "A7936C", "C7951A", "G7987C", "G8001A", "T8008A", "A8036G", "A8086G", "G8105A", "C8120A", "G8144C", "C8146T", "A8152G", "G8173A", "G8181T", "G8219A", "G8242A", "G8245A", "T8268G", "G8280T", "A8288G", "C8291A", "T8337A", "A8364C", "-8370G", "-8371T", "-8373C", "-8374C", "C8382A", "C8383A", "G8388A", "A8399G", "G8402A", "A8417T", "T8426G", "G8436C", "C8440T", "C8460T", "A8469G", "A8472T", "A8486C", "G8487-", "C8488-", "A8489-", "G8490-", "C8491-", "T8492-", "T8495C", "C8509T", "G8554A", "C8590G", "T8594C", "G8654A", "A8655C", "C8669T", "A8696G", "C8702T", "T8740C", "C8741T", "A8742C", "A8744C", "A8746T", "A8762G", "G8789T", "G8795T", "C8796A", "G8798A", "T8813C", "G8822A", "T8829A", "T8835C", "C8840T", "T8843C", "G8870A", "G8875A", "T8883C", "A8885G", "G8922A", "C8928A", "G8929A", "C8934A", "T8935A", "G8936A", "A8979C", "C9018A", "C9023T", "G9033-", "T9068C", "T9075C"], "INT": ["E11D", "L28I", "V37I", "M50I", "I72V", "S119G", "T122I", "K136Q", "V201I", "T206S", "D256E", "R284G", "D286N"], "RT-p51": ["T39A", "K49R", "I135M", "I142V", "V245K", "K249Q", "P272A", "A288S", "E297K", "I329L", "A376T", "T386I", "K390R", "A400T", "E404D"], "RT-p66": ["T39A", "K49R", "I135M", "I142V", "V245K", "K249Q", "P272A", "A288S", "E297K", "I329L", "A376T", "T386I", "K390R", "A400T", "E404D", "L452S", "V466I", "S468P", "L469M", "L491S", "A508S", "S519G", "V548I", "A554N"], "gp120": ["A3T", "V37A", "N52H", "V57R", "E59G", "N71D", "N102K", "T104N", "D105N", "-106T", "-107A", "T110S", "T112S", "S114T", "S115T", "-116A", "-117G", "-118N", "-119S", "-120S", "-121V", "K140R", "K150N", "V153I", "S181T", "K199R", "E265N", "N267T", "N272G", "H280P", "I281M", "A291T", "K309S", "T313A", "K315N", "I317T", "K319I", "P341L", "T359V", "Q361E", "-368N", "N369G", "-370T", "N434E", "N435S", "E436T", "I463L"], "gp41": ["V24I", "N42S", "L108M", "D109S", "D125N", "D129E", "L130Q", "N133K", "V137I", "E148D", "D163S", "I182V", "A189T", "P211H", "E228D", "R233K", "G235R", "I245V", "A268T", "L273I", "A281L", "S293I", "A306T", "V322G", "I329V", "L330I", "L345Q"], "nef": ["S8R", "-10V", "-11P", "P14N", "M20I", "D28E", "A32P", "A33V", "H40Y", "I43V", "T44S", "A49N", "A50-", "T51-", "A56V", "R71K", "A83G", "K105Q", "V133T", "Y135F", "E149D", "E151D", "Q152K", "C163S", "R196K", "L198K"], "p17": ["E12K", "R30Q", "L31F", "V35M", "E55D", "Q59K", "G62V", "Q69P", "K91G", "K95R", "I104V", "A115E", "A118V", "N124K", "Q127S"], "p2": ["A11G", "T12N"], "p24": ["L83M", "V86P", "T110N", "N120S", "I124V", "N183H"], "p6": ["T22P", "T23M", "E34N", "L35M", "K42R", "N47D"], "pro": ["Q7R", "Q18I", "K20R", "R41K", "K55R", "L63H", "I64V"], "rev": ["K14Q", "S30R", "E47Q", "R53Q", "S54K", "Y63C", "R80G", "S86N", "T91N", "S99T", "P100S", "I102V", "V109I", "E111D"], "tat": ["N24P", "F32Y", "T39M", "A58P", "Q60P", "T64N", "Q76T", "P81Q"], "vif": ["R19K", "F39I", "R41K", "T47N", "H48N", "I51T", "R92K", "G101N", "S118T", "R132S", "E134A", "Q136P", "T151A", "K158R", "K179E", "T188I"], "vpr": ["E6G", "V37A", "I60L", "I61L", "I63M", "I70T"], "vpu": ["Q5Y", "L7S", "-69H", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: E11D, L28I, V37I, M50I, I72V, S119G, T122I, K136Q, V201I, T206S, D256E, R284G, D286N; RT-p51: T39A, K49R, I135M, I142V, V245K, K249Q, P272A, A288S, E297K, I329L, A376T, T386I, K390R, A400T, E404D; RT-p66: T39A, K49R, I135M, I142V, V245K, K249Q, P272A, A288S, E297K, I329L, A376T, T386I, K390R, A400T, E404D, L452S, V466I, S468P, L469M, L491S, A508S, S519G, V548I, A554N; gp120: A3T, V37A, N52H, V57R, E59G, N71D, N102K, T104N, D105N, -106T, -107A, T110S, T112S, S114T, S115T, -116A, -117G, -118N, -119S, -120S, -121V, K140R, K150N, V153I, S181T, K199R, E265N, N267T, N272G, H280P, I281M, A291T, K309S, T313A, K315N, I317T, K319I, P341L, T359V, Q361E, -368N, N369G, -370T, N434E, N435S, E436T, I463L; gp41: V24I, N42S, L108M, D109S, D125N, D129E, L130Q, N133K, V137I, E148D, D163S, I182V, A189T, P211H, E228D, R233K, G235R, I245V, A268T, L273I, A281L, S293I, A306T, V322G, I329V, L330I, L345Q; nef: S8R, -10V, -11P, P14N, M20I, D28E, A32P, A33V, H40Y, I43V, T44S, A49N, A50-, T51-, A56V, R71K, A83G, K105Q, V133T, Y135F, E149D, E151D, Q152K, C163S, R196K, L198K; p17: E12K, R30Q, L31F, V35M, E55D, Q59K, G62V, Q69P, K91G, K95R, I104V, A115E, A118V, N124K, Q127S; p2: A11G, T12N; p24: L83M, V86P, T110N, N120S, I124V, N183H; p6: T22P, T23M, E34N, L35M, K42R, N47D; pro: Q7R, Q18I, K20R, R41K, K55R, L63H, I64V; rev: K14Q, S30R, E47Q, R53Q, S54K, Y63C, R80G, S86N, T91N, S99T, P100S, I102V, V109I, E111D; tat: N24P, F32Y, T39M, A58P, Q60P, T64N, Q76T, P81Q; vif: R19K, F39I, R41K, T47N, H48N, I51T, R92K, G101N, S118T, R132S, E134A, Q136P, T151A, K158R, K179E, T188I; vpr: E6G, V37A, I60L, I61L, I63M, I70T; vpu: Q5Y, L7S, -69H, -70E, -71M, -72G"}}}, {"name": "MN467100", "node_attrs": {"div": 0.20706000000000002, "accession": "MN467100", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2016.0}, "Strain_name": {"value": "2664_TEMRA_6"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "G196-", "G197-", "A198-", "C199-", "T200-", "T201-", "G202-", "A203-", "A204-", "A205-", "G206-", "C207-", "G208-", "A209-", "A210-", "A211-", "G212-", "T213-", "A214-", "A215-", "G224A", "G282A", "C300T", "A301G", "A304T", "A353G", "G365A", "G366A", "A368T", "T377C", "A388G", "G394A", "G407A", "T422C", "T426C", "T434C", "A435T", "G452A", "G455A", "C456T", "A461G", "C467T", "G471A", "A499G", "G520A", "A562G", "G579A", "C590G", "C603A", "A605C", "G607A", "G629A", "T636C", "C700T", "C707T", "C713T", "G717A", "C723A", "A724G", "C746T", "T749G", "C773T", "A809G", "G821A", "T852A", "C890T", "G908A", "T917C", "C926T", "A1002C", "T1003A", "G1005C", "G1016A", "A1025T", "G1078C", "T1172C", "C1182T", "C1220T", "T1238C", "A1250G", "C1253T", "G1268A", "G1271T", "G1313A", "T1331C", "A1339G", "G1346A", "A1349G", "C1403T", "C1406T", "A1475G", "T1482G", "T1484G", "A1488G", "G1495A", "G1499A", "A1500G", "C1501T", "T1502G", "A1528T", "G1553A", "A1664G", "T1676C", "A1691G", "A1694C", "G1718A", "T1752C", "A1781G", "T1864C", "C1986T", "C1996T", "T2011G", "A2012G", "A2023G", "G2027A", "G2058A", "A2113G", "G2117A", "C2149T", "T2195C", "T2245C", "A2290G", "G2387T", "A2400G", "G2411A", "G2428A", "T2443C", "T2458C", "T2479C", "A2498T", "A2579G", "G2580C", "A2592G", "A2617G", "C2644T", "C2671T", "G2686A", "A2693G", "C2714G", "G2725A", "G2728A", "G2847A", "T2908C", "A2925G", "T2935C", "C2953T", "C3002T", "G3004A", "A3010G", "G3019A", "T3040C", "A3064G", "A3080G", "G3093A", "C3129A", "T3132A", "G3364A", "G3427A", "T3433C", "G3473A", "G3490A", "G3523A", "A3592C", "A3622G", "A3655C", "C3665G", "G3694A", "C3712T", "T3721C", "A3768G", "C3773T", "A3794C", "C3808A", "G3836A", "G3841A", "C3843T", "T3865C", "G3878C", "G3891A", "C3940T", "T3991C", "A4076C", "A4109G", "T4117C", "C4146A", "A4148G", "G4177A", "C4180T", "G4183A", "C4195T", "A4243G", "G4252A", "G4351A", "A4384G", "T4412C", "A4474T", "G4495A", "A4525G", "A4561G", "A4643C", "T4674C", "A4677G", "A4683G", "A4688G", "C4690T", "A4693G", "T4716C", "A4721G", "G4723A", "T4727A", "G4735A", "A4774G", "G4778A", "A4811G", "A4850G", "G4862A", "T4868C", "A4888G", "T4910C", "A4949G", "T4967A", "T4976A", "C5019T", "C5034T", "G5037A", "A5048G", "A5057G", "C5086T", "G5087A", "G5093A", "C5111T", "G5123A", "A5134G", "G5167A", "G5213C", "G5225A", "G5267A", "G5273A", "G5275A", "T5354A", "G5363A", "A5397G", "T5439C", "C5444G", "T5448A", "A5462G", "T5492C", "C5552A", "A5558G", "C5563G", "A5574G", "T5576C", "T5578C", "C5615A", "A5623G", "T5624A", "T5636C", "A5659T", "G5668A", "G5700A", "C5713G", "C5727A", "A5742G", "T5788G", "A5790G", "A5793G", "-5800A", "-5805A", "T5829C", "G5839A", "C5867A", "A5869T", "A5935C", "T5974C", "A6019G", "T6026A", "A6044G", "C6115T", "T6134C", "A6142C", "A6168G", "-6170G", "-6171T", "-6172C", "A6173C", "-6175G", "A6186G", "A6188G", "T6196G", "T6202G", "-6203T", "-6204G", "-6207A", "A6208C", "A6209T", "-6210T", "-6211T", "-6212C", "-6213C", "-6215A", "-6216T", "-6217G", "-6219A", "A6222C", "A6233C", "C6262T", "C6278A", "G6329A", "A6330G", "T6400C", "G6401A", "G6403T", "A6478G", "T6511C", "A6514C", "T6523C", "T6551C", "A6576G", "A6583G", "A6602T", "C6607T", "A6648C", "T6652C", "C6670T", "T6688-", "A6689-", "T6690-", "A6691-", "C6692-", "A6693-", "-6697A", "-6698C", "-6699A", "-6700A", "-6701A", "-6702T", "-6703G", "G6716A", "T6720G", "T6721G", "A6734G", "T6735A", "G6743A", "A6754G", "C6758T", "A6765G", "C6766G", "T6769G", "G6771A", "A6773G", "A6786C", "A6789G", "A6797G", "C6800A", "C6807T", "A6812G", "A6818G", "A6820G", "C6824A", "T6828A", "T6835C", "T6838A", "A6840C", "A6842C", "C6843A", "T6849A", "T6856G", "T6860C", "T6863G", "C6864T", "G6871A", "A6900C", "C6922T", "C6935A", "C6951G", "-6956A", "-6957T", "G6963A", "T6964G", "C6966A", "-6968T", "-6969G", "-6970G", "-6971A", "-6972T", "-6973T", "-6980G", "-6982A", "-6984C", "-6985A", "-6997G", "A7007-", "T7011C", "C7014T", "C7020A", "C7045T", "G7054A", "A7090T", "A7095T", "T7099C", "G7101A", "A7102C", "C7107T", "C7124G", "A7129G", "A7133G", "C7134T", "A7152G", "A7155G", "C7156T", "A7157C", "T7159G", "A7161G", "A7177G", "G7190A", "G7197A", "G7254A", "G7256A", "G7276A", "A7313C", "A7348C", "A7373G", "T7433C", "G7440A", "T7516G", "G7517A", "G7519A", "A7533G", "C7605G", "C7625T", "T7626A", "G7627T", "G7631C", "T7642A", "G7658C", "A7668G", "T7691A", "T7708A", "A7714C", "G7720A", "G7735A", "G7754A", "G7760A", "A7761G", "A7763G", "A7796T", "C7801A", "T7813C", "A7832G", "G7846A", "T7852C", "T7853G", "T7866G", "A7873G", "C7874T", "G7937A", "C7938T", "C7941A", "C7960A", "A7992G", "A8006G", "G8007T", "A8009G", "G8018A", "T8020C", "T8035C", "A8036T", "C8047A", "C8048-", "T8049-", "G8050-", "C8051-", "G8053T", "C8056T", "C8057G", "T8064C", "C8065G"], "INT": ["K7Q", "A21T", "M22I", "A23V", "L28M", "E35Q", "S39N", "I101L", "T112A", "T124N", "T125A", "I203M"], "RT-p51": ["V8I", "A98S", "K102R", "V106I", "I135L", "S162A", "K166R", "T200A", "Q207E", "S251N", "K277R", "I329V", "G333E", "P345Q", "F346Y"], "RT-p66": ["V8I", "A98S", "K102R", "V106I", "I135L", "S162A", "K166R", "T200A", "Q207E", "S251N", "K277R", "I329V", "G333E", "P345Q", "F346Y", "D460N", "Q520H", "Q524E", "K558R"], "gp120": ["Q5N", "L58M", "N64D", "D105G", "-106V", "-107Q", "N108P", "N111A", "S114R", "-116R", "-117W", "-118D", "-119F", "-120P", "-121M", "K123T", "K127Q", "Q142K", "D159S", "E183N", "E241G", "T250S", "E265T", "H280-", "I281-", "-282Q", "-283M", "A288T", "F289W", "D297N", "H302Y", "N304R", "S306N", "R307G", "N311T", "N312S", "K315E", "Q316K", "A318V", "K320E", "R322G", "Q324K", "F325Y", "N327-", "I331Q", "N334K", "S336P", "S337V", "N349T", "Q361K", "T366S", "-368I", "N369E", "-370N", "-372K", "-373T", "-374E", "-375E", "-376S", "-377E", "-381E", "-382T", "-383I", "D384-", "T385-", "I386-", "T387-", "P389Q", "R412S", "N414I", "T416N", "S418L", "L424V", "T427V", "N433S", "N434S", "N435Q", "E436G", "D446N", "R448K", "G467E", "V468I"], "gp41": ["I4A", "R46K", "V72I", "K77R", "T101S", "L108Y", "D109N", "E110Q", "D113E", "E119Q", "K122R", "L130I", "E151K", "D153S", "K154E", "T165S", "N166K", "I177V", "L184V", "F188C", "L191F", "A212I", "P213Q", "D230G", "G235V", "R236G", "D239N", "I245F", "D248E", "L249-", "R250-"], "p17": ["G11S", "K18R", "R20Q", "R30K", "I34L", "V46I", "E55G", "G62E", "K76R", "V82I", "Q90N", "T122I", "V128I", "Q130R"], "p24": ["S41T", "V86A", "I91H", "A92P", "G116A", "E180D", "K203R"], "p6": ["S25P"], "p7": ["F6V", "N8D", "R10K", "T12V", "E21V"], "pro": ["I72V", "V77I", "R87K"], "rev": ["D11E", "L13I", "T15A", "I18L", "K20R", "F21L", "S30N", "S54W", "G57E", "W58R", "Y63L", "A68-"], "tat": ["T23S", "N24K", "K29R", "P59H", "N61G", "Q63E", "V67A", "S68P", "P77S", "P84Q"], "vif": ["R19N", "Y30H", "I31V", "K33G", "A35V", "K36R", "Y44H", "S46N", "R50K", "K63R", "H127Q", "S130R", "T167I", "H183R"], "vpr": ["Q3*", "D7N", "V37P", "G41S", "A55T", "V57I"], "vpu": ["P3H", "I6E", "V10A", "V21I", "Q36E", "D40E", "L61V", "V65M", "D78N"]}, "labels": {"aa": "INT: K7Q, A21T, M22I, A23V, L28M, E35Q, S39N, I101L, T112A, T124N, T125A, I203M; RT-p51: V8I, A98S, K102R, V106I, I135L, S162A, K166R, T200A, Q207E, S251N, K277R, I329V, G333E, P345Q, F346Y; RT-p66: V8I, A98S, K102R, V106I, I135L, S162A, K166R, T200A, Q207E, S251N, K277R, I329V, G333E, P345Q, F346Y, D460N, Q520H, Q524E, K558R; gp120: Q5N, L58M, N64D, D105G, -106V, -107Q, N108P, N111A, S114R, -116R, -117W, -118D, -119F, -120P, -121M, K123T, K127Q, Q142K, D159S, E183N, E241G, T250S, E265T, H280-, I281-, -282Q, -283M, A288T, F289W, D297N, H302Y, N304R, S306N, R307G, N311T, N312S, K315E, Q316K, A318V, K320E, R322G, Q324K, F325Y, N327-, I331Q, N334K, S336P, S337V, N349T, Q361K, T366S, -368I, N369E, -370N, -372K, -373T, -374E, -375E, -376S, -377E, -381E, -382T, -383I, D384-, T385-, I386-, T387-, P389Q, R412S, N414I, T416N, S418L, L424V, T427V, N433S, N434S, N435Q, E436G, D446N, R448K, G467E, V468I; gp41: I4A, R46K, V72I, K77R, T101S, L108Y, D109N, E110Q, D113E, E119Q, K122R, L130I, E151K, D153S, K154E, T165S, N166K, I177V, L184V, F188C, L191F, A212I, P213Q, D230G, G235V, R236G, D239N, I245F, D248E, L249-, R250-; p17: G11S, K18R, R20Q, R30K, I34L, V46I, E55G, G62E, K76R, V82I, Q90N, T122I, V128I, Q130R; p24: S41T, V86A, I91H, A92P, G116A, E180D, K203R; p6: S25P; p7: F6V, N8D, R10K, T12V, E21V; pro: I72V, V77I, R87K; rev: D11E, L13I, T15A, I18L, K20R, F21L, S30N, S54W, G57E, W58R, Y63L, A68-; tat: T23S, N24K, K29R, P59H, N61G, Q63E, V67A, S68P, P77S, P84Q; vif: R19N, Y30H, I31V, K33G, A35V, K36R, Y44H, S46N, R50K, K63R, H127Q, S130R, T167I, H183R; vpr: Q3*, D7N, V37P, G41S, A55T, V57I; vpu: P3H, I6E, V10A, V21I, Q36E, D40E, L61V, V65M, D78N"}}}]}, {"name": "B_NODE_0000004", "node_attrs": {"div": 0.14568, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C1220T", "C1996T", "G2470A", "C2909G", "A3196G", "A3264G", "C3303T", "A3304G", "G4150A", "G4723A", "A4888G", "C5495A", "C5567A", "C5614T", "T5626G", "G5775A", "A6326G", "A6602T", "-6703A", "-6984C", "C7024T", "A7158C", "A7373G", "A8503C", "A8739G", "G9016A"], "RT-p51": ["P272A", "K390R", "T403M"], "RT-p66": ["P272A", "K390R", "T403M"], "gp120": ["T250S"], "gp41": ["D113N"], "p17": ["K76R"], "tat": ["T40K", "T64N"], "vif": ["S46N"]}, "labels": {"aa": "RT-p51: P272A, K390R, T403M; RT-p66: P272A, K390R, T403M; gp120: T250S; gp41: D113N; p17: K76R; tat: T40K, T64N; vif: S46N"}}, "children": [{"name": "B_NODE_0000005", "node_attrs": {"div": 0.15135, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A424G", "T495A", "G579A", "A604G", "T635C", "C641A", "G755A", "A1500G", "A1736G", "A1781G", "C1782A", "A1832C", "G2009A", "G2027A", "A2461G", "T2499C", "G2686A", "C3067T", "G3385A", "A3487G", "C3610T", "T4412C", "T4701G", "G4861A", "T4914C", "T4969G", "C5214T", "G5225A", "G5437C", "T5487C", "G5557A", "T5584C", "T5627C", "-5800A", "A5911T", "C5916A", "-6203G", "-6204G", "-6205G", "-6210T", "-6215A", "-6216T", "-6217G", "G6354A", "T6637G", "T6641C", "A6932T", "A6959G", "T6961A", "T6967A", "-6985A", "T6988C", "-7000A", "T7150C", "A7299G", "G7426A", "G7440A", "G7633C", "A7689G", "C7801T", "G7885A", "G7987A", "A7988G", "G8170C", "G8245A", "-8373G", "A8469C", "G8805A", "G8922A", "G8936A"], "RT-p51": ["I135T"], "RT-p66": ["I135T"], "gp120": ["T21N", "-117G", "-121M", "N160T", "N261K", "S263P", "T360S", "-383S", "K482R"], "gp41": ["R46K", "D129G", "R229G"], "nef": ["I43L", "T51N", "E155K"], "p17": ["S54T", "V82I", "Q90R", "D102E"], "p7": ["T12A"], "pro": ["T12P", "A71T", "V77I"], "rev": ["E47R", "A108P"], "tat": ["A21P", "S70P"], "vif": ["F39V", "Y110H", "I128R"], "vpr": ["G41S"], "vpu": ["L7A"]}, "labels": {"aa": "RT-p51: I135T; RT-p66: I135T; gp120: T21N, -117G, -121M, N160T, N261K, S263P, T360S, -383S, K482R; gp41: R46K, D129G, R229G; nef: I43L, T51N, E155K; p17: S54T, V82I, Q90R, D102E; p7: T12A; pro: T12P, A71T, V77I; rev: E47R, A108P; tat: A21P, S70P; vif: F39V, Y110H, I128R; vpr: G41S; vpu: L7A"}}, "children": [{"name": "KU685591", "node_attrs": {"div": 0.19640000000000002, "accession": "KU685591", "clade_membership": {"value": "B"}, "country": {"value": "ES"}, "date": {"value": 2014.0}, "Strain_name": {"value": "EUR_0031"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C152A", "T154C", "T155A", "A216G", "C227A", "A302T", "-305T", "G369A", "T377C", "A388G", "C393A", "T396C", "G407A", "A428G", "A435T", "T486C", "A561C", "A566C", "A584T", "A606G", "G615A", "A619G", "A653G", "A674C", "G703C", "G709A", "C710A", "C746T", "T777A", "G818A", "T851C", "T861G", "T936C", "A1002G", "A1109G", "C1118T", "T1143C", "A1173G", "C1174T", "C1182T", "G1192A", "A1199G", "A1202C", "T1263A", "A1307G", "C1316T", "T1334C", "A1340G", "G1346A", "C1362T", "A1461G", "G1486A", "A1496G", "C1514T", "A1525G", "A1526G", "A1664G", "T1679C", "A1691G", "A1709C", "A1740G", "T1796C", "A1804G", "G1840A", "A1852G", "C1853A", "A1907G", "T1954A", "C1960A", "T1997A", "A2002G", "A2023G", "T2062C", "A2073G", "C2075A", "A2161G", "T2206C", "T2383C", "C2386A", "G2422A", "A2470G", "G2600A", "G2602A", "A2611G", "A2614G", "G2675A", "G2704A", "A2707G", "C2714A", "A2716T", "T2719C", 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"Q92R", "L93I"], "rev": ["E10D", "K14R", "V16I", "S30N", "R53H", "T62A", "P100S", "S106P", "V109I", "K115E"], "tat": ["E2D", "K19R", "N24K", "T39L", "Y47H", "A58S", "Q60P", "S62N"], "vif": ["K33R", "T47P", "I51V", "T74A", "D78E", "W89G", "R92E", "P100T", "L109V", "R132S", "T155K"], "vpr": ["S28R", "V37L", "H40Q", "A55T", "Q77R", "R80K", "T84V", "A93S"], "vpu": ["I9V", "V10A", "A15V", "A16G", "R37K", "K38R", "D44E", "R47N", "V65M"]}, "labels": {"aa": "INT: S17N, L28I, P30A, M50L, I72V, I101L, S119P, T122I, T124A, K160N, V201I, T206S, D256E; RT-p51: E169K, E194K, Q207N, A288S, E297K, E328D, Q334N, M357T, A376T, T386I, A400T, N418S, V435A, G436E; RT-p66: E169K, E194K, Q207N, A288S, E297K, E328D, Q334N, M357T, A376T, T386I, A400T, N418S, V435A, G436E, E449D, L503I, K558R; gp120: Q5P, K18R, E19N, V57N, N64D, N66D, M67L, -106L, -107K, N111T, T112G, S114A, S115L, -116G, -118I, -120P, E122G, K123E, I133V, S136I, K138R, M141I, K143R, Y149F, D157E, D159K, S167N, V172F, T212S, E247Q, F249L, E265I, R287K, R307G, T308D, K309D, N312K, T313A, K320Q, E323G, -328N, V344T, S347T, G351A, N364D, N369-, T371-, N379E, -381R, -382C, D384N, I386L, R428G, E436D, T439I, R441G, V468I, K472R; gp41: V2A, G3-, M7L, S23A, Q32L, K77Q, T101N, K106R, S107T, L108H, E110Y, E119Q, N133S, I135L, E137K, N166S, F206L, H209R, A212T, D232G, G235T, L304Y, A306T, T307I, V322I, F326C, H331N; nef: S8R, -10S, -11G, P14H, R19K, D28E, L87I, Y102H, K105R, V114I, Y135F, E149D, C163S; p17: E12K, K18R, I34L, R76Q, K91G, V94I, K95R, K113N, G123A, S125K; p2: I13V; p24: S16T, S44A, I91V, T148V, R154K, S178T; p6: T21A, L35M, K42R; p7: R7K, K20R; pro: L19I, N37D, L63P, C67S, Q92R, L93I; rev: E10D, K14R, V16I, S30N, R53H, T62A, P100S, S106P, V109I, K115E; tat: E2D, K19R, N24K, T39L, Y47H, A58S, Q60P, S62N; vif: K33R, T47P, I51V, T74A, D78E, W89G, R92E, P100T, L109V, R132S, T155K; vpr: S28R, V37L, H40Q, A55T, Q77R, R80K, T84V, A93S; vpu: I9V, V10A, A15V, A16G, R37K, K38R, D44E, R47N, V65M"}}}, {"name": "KT124778", "node_attrs": {"div": 0.19045, "accession": "KT124778", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2005.0}, "Strain_name": {"value": "509452"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A371G", "A379G", "T426C", "A437T", "G520A", "A551G", "A562G", "A571T", "A585G", "C586T", "G599A", "A680G", "C707T", "G716T", "T749C", "G810A", "A833T", "T852A", "C926T", "A941G", "G944T", "A968C", "C1013T", "A1090G", "A1173T", "A1199C", "G1271T", "G1313A", "G1404A", "C1406T", "A1458G", "G1562A", "T1610C", "G1760A", "G1769A", "T1783A", "A1793G", "C1828T", "G1849A", "A1908G", "A1921G", "A1966G", "C1985A", "A2008G", "T2013C", "G2173A", "A2194G", "T2236C", "T2245A", "A2305G", "C2356T", "A2389G", "T2440C", "C2452A", "C2467T", "G2473A", "T2476C", "A2579T", "G2602T", "G2647A", "A2693G", "T2770C", "G2828A", "A2842G", "G2921A", "T2944C", "A2977T", "A3031G", "G3093A", "A3097G", "T3118A", "G3211A", "G3250A", "G3307T", "C3346T", "G3364A", 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"T167Q", "G182D", "N190S"], "vpr": ["Y15H", "A89V"], "vpu": ["P3S", "Q5E", "A8S", "E56D", "E58D", "E60D", "L61Q", "S62E", "A63E", "V65S", "E66T", "M67L", "G68M", "-69V", "-70E", "-71R", "-72G", "H74L", "V79I"]}, "labels": {"aa": "INT: E11D, V31I, C56S, K211R, K215N, S230N, L234I, A265V; RT-p51: S162C, E169D, M184I, T200A, V245M, V276I, G333E, E404D, K431R; RT-p66: S162C, E169D, M184I, T200A, V245M, V276I, G333E, E404D, K431R, R461K, S519N, E529K; gp120: A2E, A3D, E4-, Q5K, E19D, E59G, N64K, T104I, -106T, N109T, N111K, -116M, -118E, -119M, M126I, T135I, S136N, I137K, K138W, E144T, L151S, D157-, T161G, S167Q, F195Y, L198I, D202N, K204Q, P210Q, V217I, V242I, D251N, E265Q, K277R, D297P, Q300K, H302Y, I305V, R307K, K309R, N312D, K315Q, I317V, K319T, E323A, -326G, N334K, Q335H, I343V, -368L, N369G, -370N, T371D, -374T, -375E, -376R, -377L, N379R, -381E, -382G, T385S, P389Q, R412A, T416N, N433D, N434T, N435S, E436Q, T437N, K462R; gp41: I4L, M7V, Q52H, T101A, L108M, E110D, N113G, K122R, N133T, Q147L, S157N, A189T, Q199K, L210F, E220G, D232T, D239N, I245V, D247E, C253F, R261S, L265S, A268T, A281I, L289I, N298K, V322A, R324G, R334T; nef: -10K, -11V, G12E, R21Q, A23T, D54A, Q61H, E63D, A83G, L85F, K92R, E98D, Q152E, S169G, Q170L, D174E, K178R, F191L, H192R, M194I, L198K, E201D, Y202F; p17: K15R, G62E, Y79F, T84V, K91R, Q127H; p2: T12A; p24: V27I, S41T, E71D, E79D, N120S, T148S, E180D, G225S; p6: L35K, S50L; pro: N37S, L63T, I72T; rev: D11E, T15A, F21I, P28L, R50N, I55L, G57E, W58R, S61G, Y63C, P67S, A68T, S86N, S99N, P107H, *117E; tat: R7S, T23N, F32L, T39G, G42A, N61S, V67D, S68P, A74T, K85E; vif: K33G, G37K, R41K, R50K, V55I, K63S, V65I, I66V, H73Q, R92K, S118T, H127S, V129I, S130R, P131H, T151A, T155P, K157R, K160R, T167Q, G182D, N190S; vpr: Y15H, A89V; vpu: P3S, Q5E, A8S, E56D, E58D, E60D, L61Q, S62E, A63E, V65S, E66T, M67L, G68M, -69V, -70E, -71R, -72G, H74L, V79I"}}}]}, {"name": "B_NODE_0000006", "node_attrs": {"div": 0.14777, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C771G", "A2925G", "G3127A", "T5062G", "A6209-", "G6218-", "G6220-", "C6692A", "A6810T", "G6995-", "T8366-", "G8385A", "A8886C"], "RT-p51": ["K277R"], "RT-p66": ["K277R"], "gp120": ["E122-", "K315E", "K319I", "R412S", "Q414L"], "nef": ["A15R", "M182Q", "M194V"], "p24": ["P14A"], "rev": ["A68E"], "vif": ["I159R"], "vpu": ["P3S"]}, "labels": {"aa": "RT-p51: K277R; RT-p66: K277R; gp120: E122-, K315E, K319I, R412S, Q414L; nef: A15R, M182Q, M194V; p24: P14A; rev: A68E; vif: I159R; vpu: P3S"}}, "children": [{"name": "B_NODE_0000007", "node_attrs": {"div": 0.15543, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A423C", "A585G", "C586T", "A715C", "G818A", "T917C", "G1192A", "G1346A", "A1450G", "A1586G", "G1845A", "A1903C", "A1982G", "C1986A", "A2155G", "T2209C", "A2693G", "A2839G", "A3071G", "C3542T", "T3551C", "A4109G", "C4140T", "G4982T", "G5024A", "G5087A", "A5556C", "T5778C", "G5803-", "G5808-", "G5811-", "-5814G", 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S136T, H280N, S337A, V468I; gp41: F326G, A328G; p17: R30Q, T84V; p24: R154K; pro: G16E, E35D, I62V; rev: K14T; vif: R132S; vpu: E66-, M67-, G68-"}}, "children": [{"name": "JF320048", "node_attrs": {"div": 0.20779, "accession": "JF320048", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2006.0}, "Strain_name": {"value": "502_0309_wg13"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G369A", "A417C", "T426C", "G471C", "T473C", "C525T", "C531T", "C536T", "A541C", "G547C", "A557G", "A562G", "G607A", "G608C", "C641T", "A685C", "A706G", "C707T", "C714A", "T794C", "A803G", "C827T", "A905G", "G956A", "G980A", "T983C", "T1052C", "C1060A", "C1169T", "G1184A", "A1196G", "T1220C", "C1295T", "G1313A", "C1403T", "T1421G", "A1430G", "A1449G", "T1451A", "C1459A", "A1461G", "A1475G", "G1486A", "G1508A", "T1517C", "A1525G", "G1532A", "C1550T", "G1589A", "C1598T", "A1714C", "T1790C", "G1840A", "A1867C", "T1868C", "C1960A", "T1996A", "T2035C", 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"-7009A", "C7020A", "T7024C", "G7055A", "G7072A", "G7089A", "A7095T", "T7114C", "C7127A", "T7159C", "G7160A", "-7161T", "-7162C", "-7163T", "C7170T", "G7195A", "T7228C", "A7245T", "T7250A", "A7255G", "C7267T", "A7303G", "G7426A", "T7432C", "A7445G", "T7447G", "A7549G", "A7573G", "C7605A", "A7620G", "C7625A", "G7627A", "A7629C", "T7630A", "G7633T", "G7640A", "A7673G", "G7688A", "A7705G", "A7706C", "A7714C", "G7735A", "G7754T", "A7755C", "G7765A", "G7773A", "G7790A", "A7799C", "C7801A", "A7819G", "G7868A", "T7872C", "G7885A", "C7906T", "A7918G", "G7929T", "C7938T", "C7939T", "C7951A", "A7962G", "A8006G", "T8008C", "C8009T", "G8010A", "A8011C", "A8019G", "T8035C", "G8042A", "A8043G", "G8050A", "C8065T", "A8104G", "G8105A", "T8138G", "A8151G", "A8163G", "G8173A", "A8192C", "C8223T", "T8227C", "A8262C", "G8267T", "G8276A", "C8277T", "T8287C", "C8296T", "A8303G", "G8304T", "A8306C", "A8311C", "G8330T", "C8331T", "T8332G", "-8364T", "-8373G", "-8374C", "C8382T", "C8406A", "G8409A", "-8411A", "A8425C", "C8440T", "G8453A", "A8494C", "T8495C", "G8499A", "C8500A", "C8514G", "T8543C", "G8554A", "C8585T", "A8586C", "T8595G", "A8656G", "C8676T", "G8682A", "C8727A", "C8728A", "T8786G", "G8822A", "T8829A", "A8837G", "A8844C", "G8870A", "G8875A", "G8882A", "C8937T", "G8945A", "A8954G", "C8960A", "T8966C", "G8968A"], "INT": ["E10D", "S17T", "S24A", "L45G", "T112A", "S119G", "T124N", "T125A", "D256E"], "RT-p51": ["V60I", "S68G", "I135T", "T165I", "E204A", "E248K", "I293V", "E297A", "Q334L", "R356K", "A360T", "T369A", "V381I", "A400T"], "RT-p66": ["V60I", "S68G", "I135T", "T165I", "E204A", "E248K", "I293V", "E297A", "Q334L", "R356K", "A360T", "T369A", "V381I", "A400T", "E449D", "V467I", "Q509K", "K530R", "A554S"], "gp120": ["A3V", "L6G", "T35P", "Q86E", "V99I", "-106Y", "-107T", "N113A", "S114I", "S115E", "-116T", "-117I", "-118R", "-119R", "-120E", "-121M", "K123-", "G124-", "E125-", "M126-", "T134S", "M141V", "E144K", "V153I", "P155Q", "I156M", "N158D", "S181T", "N201R", "K204R", "T212G", "R224T", "V226A", "E247A", "F249L", "A253T", "T255N", "N261K", "E262D", "S263P", "E265N", "N267T", "T269M", "N272S", "N280T", "A291T", "D294E", "I295V", "R307E", "T308A", "K309A", "N311E", "N312D", "T313A", "E315R", "A318S", "I319T", "R322G", "-326K", "-328R", "K329-", "P341L", "V344I", "S347T", "-370S", "-372G", "-373E", "-374T", "-375G", "-376G", "-377S", "-381G", "-382R", "-383N", "D384G", "P389Q", "E401K", "M406I", "S412K", "T416R", "L425I", "N435S", "E436T", "T437S", "T439I", "M447I", "E464V", "L466I"], "gp41": ["I48V", "T101N", "K106R", "L108I", "D109A", "E110D", "I124V", "D129N", "I135L", "E137D", "E151S", "S157N", "D163N", "N166Q", "A189T", "V190A", "H209L", "A212V", "E220G", "R236Y", "D239G", "D247S", "A268T", "W279G", "A281V", "K283R", "N287S", "K297Q", "T307I", "E320A", "V322L", "A325I", "R334V", "A343L"], "nef": ["S8W", "S9A", "P14S", "R15T", "A23T", "D28A", "A33V", "A53N", "D54A", "L58V", "R71K", "K82Q", "L85V", "Y102H", "K105R", "V114I", "P129K", "Q152E", "E155K", "N157T", "C163S", "M168L", "H199Y", "D205N", "C206*"], "p17": ["E12K", "K28Q", "V46L", "P66S", "Q69P", "G71A", "K91N", "Q117P", "N124S", "Q127T"], "p2": ["N9G", "T12N", "I13V"], "p24": ["T110N"], "p6": ["E12A"], "p7": ["R7K", "K20R"], "pro": ["L63H", "L93I"], "rev": ["D7N", "V16I", "K20R", "P31S", "S54L", "I55L", "Y63H", "G65E", "E68T", "L73F", "S86D", "V97G", "V109I", "K115T"], "tat": ["T23N", "N24T", "R53K", "A58P", "Q60H", "N61D", "S62N", "A74S", "P77F", "P81Q", "K85E"], "vif": ["M29I", "Y30H", "K34R", "F39L", "R50K", "I66V", "T67I", "R93G", "S95R", "Y110H", "H127R", "T155P", "P156L", "K158R", "S186N"], "vpr": ["A4T", "S28R", "V37T", "H40Q", "Y45H", "Q77R", "T84I"], "vpu": ["Q5E", "L7A", "A16I", "R31K", "R37K", "K38E", "-69V", "-70E", "-71R", "-72G"]}, "labels": {"aa": "INT: E10D, S17T, S24A, L45G, T112A, S119G, T124N, T125A, D256E; RT-p51: V60I, S68G, I135T, T165I, E204A, E248K, I293V, E297A, Q334L, R356K, A360T, T369A, V381I, A400T; RT-p66: V60I, S68G, I135T, T165I, E204A, E248K, I293V, E297A, Q334L, R356K, A360T, T369A, V381I, A400T, E449D, V467I, Q509K, K530R, A554S; gp120: A3V, L6G, T35P, Q86E, V99I, -106Y, -107T, N113A, S114I, S115E, -116T, -117I, -118R, -119R, -120E, -121M, K123-, G124-, E125-, M126-, T134S, M141V, E144K, V153I, P155Q, I156M, N158D, S181T, N201R, K204R, T212G, R224T, V226A, E247A, F249L, A253T, T255N, N261K, E262D, S263P, E265N, N267T, T269M, N272S, N280T, A291T, D294E, I295V, R307E, T308A, K309A, N311E, N312D, T313A, E315R, A318S, I319T, R322G, -326K, -328R, K329-, P341L, V344I, S347T, -370S, -372G, -373E, -374T, -375G, -376G, -377S, -381G, -382R, -383N, D384G, P389Q, E401K, M406I, S412K, T416R, L425I, N435S, E436T, T437S, T439I, M447I, E464V, L466I; gp41: I48V, T101N, K106R, L108I, D109A, E110D, I124V, D129N, I135L, E137D, E151S, S157N, D163N, N166Q, A189T, V190A, H209L, A212V, E220G, R236Y, D239G, D247S, A268T, W279G, A281V, K283R, N287S, K297Q, T307I, E320A, V322L, A325I, R334V, A343L; nef: S8W, S9A, P14S, R15T, A23T, D28A, A33V, A53N, D54A, L58V, R71K, K82Q, L85V, Y102H, K105R, V114I, P129K, Q152E, E155K, N157T, C163S, M168L, H199Y, D205N, C206*; p17: E12K, K28Q, V46L, P66S, Q69P, G71A, K91N, Q117P, N124S, Q127T; p2: N9G, T12N, I13V; p24: T110N; p6: E12A; p7: R7K, K20R; pro: L63H, L93I; rev: D7N, V16I, K20R, P31S, S54L, I55L, Y63H, G65E, E68T, L73F, S86D, V97G, V109I, K115T; tat: T23N, N24T, R53K, A58P, Q60H, N61D, S62N, A74S, P77F, P81Q, K85E; vif: M29I, Y30H, K34R, F39L, R50K, I66V, T67I, R93G, S95R, Y110H, H127R, T155P, P156L, K158R, S186N; vpr: A4T, S28R, V37T, H40Q, Y45H, Q77R, T84I; vpu: Q5E, L7A, A16I, R31K, R37K, K38E, -69V, -70E, -71R, -72G"}}}, {"name": "MF109369", "node_attrs": {"div": 0.19938, "accession": "MF109369", "clade_membership": {"value": "B"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "13592_1_26.3"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "C467T", "A499G", "A563G", "T572C", "G615A", "C623T", "G644A", "C662T", "G677A", "G690A", "G755C", "C890T", "C893T", "A899G", "C902T", "G998A", "A1002G", "C1040T", "A1073G", "T1214C", "G1271A", "A1307G", "T1331C", "T1335C", "A1349G", "A1370G", "T1421C", "T1452C", "C1453A", "A1454G", "G1455T", "T1457A", "A1458G", "A1500G", "C1615A", "A1642G", "A1643G", "C1656A", "A1657G", "G1661A", "A1664G", "G1673A", "G1687A", "C1711T", "A1735G", "T1752C", "A1781G", "G1794A", "C1987A", "A1988G", "G2074A", "A2140G", "A2179G", "G2248A", "C2356T", "A2362G", "A2371G", "A2395G", "A2402C", "A2459G", "C2464T", "T2542C", "A2579T", "G2602A", "A2614G", "T2638C", "C2671T", "A2677G", "G2686A", "A2726C", "G2728T", "A2896G", "G2909C", "A2977G", "A3001G", "G3019A", "A3080G", "G3093A", "A3097C", "T3132A", "T3172A", "A3190G", "C3225T", "T3256A", "G3264A", "A3265G", "A3268G", "A3295G", "G3334A", "G3442A", "T3450C", "G3490A", "C3500T", "G3520A", "T3541A", "A3574C", "C3577T", "G3643A", "T3644A", "G3667A", "A3703G", "A3761G", "G3766A", "A3768G", "G3796A", "A3805G", "G3814A", "G3866A", "C3962T", "A3988G", "A4036G", "T4039C", "A4106C", "C4110T", "A4111G", "A4130C", "G4131C", "C4141T", "A4150T", "A4264C", "G4464A", "A4483G", "C4543T", "A4567G", "G4694C", "G4695A", "G4696A", "A4723G", "T4772C", "C4832T", "A4858C", "C4911A", "G4913A", "T4952C", "T4959G", "T4969G", "A5015G", "A5039G", "T5047G", "C5050A", "A5056T", "G5062C", "A5085G", "A5159G", "A5161G", "C5162T", "G5187A", "A5191G", "G5213C", "C5221A", "A5248G", "C5300A", "A5301C", "A5302C", "G5330A", "A5335T", "G5359C", "A5360T", "A5385C", "C5451T", "A5462G", "T5475C", "A5493G", "G5501C", "G5546C", "A5555G", "G5557A", "A5558G", "C5563G", "T5576G", "T5582C", "T5584C", "C5602T", "C5611-", "A5612-", "A5613-", "C5651T", "C5679T", "C5686G", "T5687C", "G5729A", "A5734C", "A5751T", "A5790G", "T5801-", "G5802-", "-5817A", "-5819T", "G5856A", "G5864A", "A5866C", "C5916A", "T5929C", "G5954A", "A5955G", "A5957G", "T5964C", "T6021A", "G6028A", "A6044G", "A6061G", "G6079A", "A6092G", "A6133G", "C6145T", "C6153A", "-6170G", "-6171C", "A6179G", "T6181-", "A6188G", "A6192C", "G6195-", "T6196-", "A6197-", "T6199-", "A6200-", "G6201-", "T6202-", "G6206-", "A6229C", "G6232A", "A6251G", "G6269A", "T6271C", "G6280A", "T6299A", "A6303C", "G6323-", "A6324-", "T6325-", "G6326-", "A6327-", "T6328-", "G6329-", "A6330-", "T6331-", "A6332-", "A6333-", "T6334-", "A6335-", "C6336-", "T6337-", "A6338-", "G6339-", "C6340-", "G6368A", "T6369C", "G6379C", "G6458A", "A6465T", "A6476T", "A6484T", "G6547A", "G6550A", "G6578A", "G6631T", "A6639C", "A6647G", "C6670T", "T6676C", "-6697G", "A6703-", "A6727T", "C6752A", "A6753G", "C6777A", "C6790A", "A6797G", "A6799G", "C6807T", "-6830G", "-6831G", "-6832G", "A6833C", "A6841G", "A6859G", "T6888C", "G6889A", "A6913G", "A6929T", "C6935G", "A6947-", "G6948-", "T6949-", "A6950-", "C6951-", "T6952-", "T6953-", "G6954-", "G6955-", "A6959-", "A6960-", "T6961-", "A6962-", "G6963-", "T6964-", "A6965-", "C6966-", "T6967-", "A6974-", "T6976-", "G6977-", "C6984-", "A6986-", "A6987-", "T6988-", "A6989-", "A6990-", "C6991-", "A6992-", "C6993-", "A7007-", "A7046T", "G7048A", "G7054A", "A7090T", "C7094A", "A7102C", "G7126A", "A7148-", "A7149-", "T7150-", "A7151-", "A7152-", "T7153-", "A7154-", "A7155-", "C7156-", "A7157-", "C7158-", "T7159-", "G7160-", "C7164-", "C7165-", "G7168A", "C7171T", "G7190A", "G7197A", "C7201T", "A7299G", "A7313G", "A7315C", "A7322T", "T7337C", "G7343A", "A7355G", "G7373A", "G7375A", "T7433C", "G7440A", "G7459A", "A7477G", "C7489T", "A7533G", "A7553C", "C7582T", "G7589A", "T7630G", "G7631C", "G7633A", "T7642C", "G7658C", "C7678T", "T7691A", "G7709T", "A7710C", "A7713C", "G7720A", "A7721C", "A7722T", "A7729G", "A7733C", "G7745A", "G7759A", "G7760A", "A7764C", "G7765T", "C7792T", "C7898A", "T7921C", "G7937A", "C7938A", "G7995A", "G8001C", "C8005A", "G8007T", "A8032T", "C8047T", "C8051A", "G8055A", "G8079A", "C8093A", "C8106T", "T8112C", "A8118G", "G8144A", "A8152G", "C8171A", "T8197G", "T8200C", "C8213T", "A8216G", "C8221T", "G8242A", "G8264A", "G8365-", "G8372-", "T8375-", "C8386G", "T8387G", "A8403-", "G8404-", "A8405-", "C8406-", "G8407-", "A8408-", "G8409-", "C8410-", "G8412-", "A8413-", "G8414C", "C8415A", "T8426C", "C8451T", "A8465G", "C8471T", "G8487C", "G8502A", "G8588A", "C8590G", "T8595C", "A8597C", "G8654A", "A8657G", "C8687T", "G8717T", "A8754T", "C8755G", "T8786A", "G8814A", "A8815C", "T8843C", "G8848A", "G8858A", "G8861A", "T8864C", "G8888A", "C8904A", "C8906A", "C8948T", "A8950-", "C8951-", "A8952-", "A8954T"], "INT": ["V31I", "K111Q", "T112V", "S119P", "S230N"], "RT-p51": ["K103Q", "K122E", "S162C", "K211H", "A272P", "I329V", "G333E", "Q334H", "F346Y", "T377I", "R390K"], "RT-p66": ["K103Q", "K122E", "S162C", "K211H", "A272P", "I329V", "G333E", "Q334H", "F346Y", "T377I", "R390K", "L452S", "L517I", "I556V", "K558R"], "gp120": ["S1N", "E4N", "T21N", "D34S", "T35A", "V37A", "V56E", "N64D", "I80V", "T100N", "-106A", "-107N", "N109A", "T110N", "N111A", "N113-", "S114-", "S115-", "G124R", "E125D", "M126I", "I133V", "D139N", "Y149N", "K150T", "D157-", "N158-", "D159-", "N160-", "T161-", "S162-", "V172T", "Q175H", "D202N", "K204M", "T208S", "V242I", "Q259H", "E262A", "I281M", "Q300R", "T308E", "N312K", "A318V", "-326G", "N327H", "-328N", "M345T", "T359S", "Q361E", "S365-", "T366-", "W367-", "N369-", "T371-", "N378-", "N379-", "T380-", "D384-", "T385-", "M398L", "L414K", "T416S", "N432-", "N433-", "N434-", "N435-", "E436-", "T437-", "D446N", "R448K", "K482R"], "gp41": ["I4V", "M7L", "A14T", "T18A", "V24I", "R46K", "K77R", "I84L", "A96T", "D109E", "E110Q", "N113D", "E119Q", "L130I", "E136S", "E137A", "N140L", "K144Q", "E148K", "D153N", "K154T", "Q199K", "H209R", "A212N", "R231K", "R233T", "G235I", "S251N", "R259H", "L264I", "A268V", "I270T", "E272G", "A281I", "Q290K", "N298K", "L304F", "N305D", "V321I"], "nef": ["S8-", "S9-", "R21-", "R22-", "A23-", "E24-"], "p1": ["K4R", "H9S"], "p17": ["E55G", "R76K", "K91R", "V94I", "A119T", "Q127P"], "p2": ["N9S", "S10Q", "A11S", "T12A"], "p24": ["I91V"], "p6": ["S3N", "P11L", "E19G", "S25P", "A39T"], "p7": ["T12A", "T50N"], "pro": ["L63Q", "I64V"], "rev": ["D11Q", "T14A", "T15A", "F21V", "Y23H", "S30K", "Q51H", "R53N", "T62S", "P67S", "T82N", "S99N", "I102V", "A108E", "*117E"], "tat": ["K29R", "T39M", "G42A", "R57T", "Q60R", "N61S", "Q63E", "V67G", "L69P", "S70P", "P77T"], "vif": ["K33R", "K36N", "G37K", "N46S", "K91T", "L109I", "L125V", "I128R", "T151A", "I154R", "T155K", "K157I", "R159T", "T167A", "H192R"], "vpr": ["T19A", "S28N", "V37P", "Q66T", "Q77L", "R85P", "S94R"], "vpu": ["S3L", "L4Q", "Q5-", "L7V", "A15V", "L27A", "R41K", "I43L", "E48D", "V65-"]}, "labels": {"aa": "INT: V31I, K111Q, T112V, S119P, S230N; RT-p51: K103Q, K122E, S162C, K211H, A272P, I329V, G333E, Q334H, F346Y, T377I, R390K; RT-p66: K103Q, K122E, S162C, K211H, A272P, I329V, G333E, Q334H, F346Y, T377I, R390K, L452S, L517I, I556V, K558R; gp120: S1N, E4N, T21N, D34S, T35A, V37A, V56E, N64D, I80V, T100N, -106A, -107N, N109A, T110N, N111A, N113-, S114-, S115-, G124R, E125D, M126I, I133V, D139N, Y149N, K150T, D157-, N158-, D159-, N160-, T161-, S162-, V172T, Q175H, D202N, K204M, T208S, V242I, Q259H, E262A, I281M, Q300R, T308E, N312K, A318V, -326G, N327H, -328N, M345T, T359S, Q361E, S365-, T366-, W367-, N369-, T371-, N378-, N379-, T380-, D384-, T385-, M398L, L414K, T416S, N432-, N433-, N434-, N435-, E436-, T437-, D446N, R448K, K482R; gp41: I4V, M7L, A14T, T18A, V24I, R46K, K77R, I84L, A96T, D109E, E110Q, N113D, E119Q, L130I, E136S, E137A, N140L, K144Q, E148K, D153N, K154T, Q199K, H209R, A212N, R231K, R233T, G235I, S251N, R259H, L264I, A268V, I270T, E272G, A281I, Q290K, N298K, L304F, N305D, V321I; nef: S8-, S9-, R21-, R22-, A23-, E24-; p1: K4R, H9S; p17: E55G, R76K, K91R, V94I, A119T, Q127P; p2: N9S, S10Q, A11S, T12A; p24: I91V; p6: S3N, P11L, E19G, S25P, A39T; p7: T12A, T50N; pro: L63Q, I64V; rev: D11Q, T14A, T15A, F21V, Y23H, S30K, Q51H, R53N, T62S, P67S, T82N, S99N, I102V, A108E, *117E; tat: K29R, T39M, G42A, R57T, Q60R, N61S, Q63E, V67G, L69P, S70P, P77T; vif: K33R, K36N, G37K, N46S, K91T, L109I, L125V, I128R, T151A, I154R, T155K, K157I, R159T, T167A, H192R; vpr: T19A, S28N, V37P, Q66T, Q77L, R85P, S94R; vpu: S3L, L4Q, Q5-, L7V, A15V, L27A, R41K, I43L, E48D, V65-"}}}]}, {"name": "B_NODE_0000008", "node_attrs": {"div": 0.15516000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T534G", "A562G", "G599A", "G607A", "G677A", "A1002G", "A1090G", "C1229T", "G1271T", "A1526G", "G1562A", "A1643G", "C1656T", "G2198A", "G2230A", "A2641G", "C2776T", "G2828A", "G2957T", "A3280G", "C3394T", "G3755A", "A3781G", "A4076C", "C4501T", "T4701G", "T4868C", "T5182C", "C5214T", "G5548T", "-5800G", "-5804A", "-5805G", "-5806A", "-5807T", "-5809G", "-5810G", "G6020A", "A6076G", "A6092G", "-6180C", "A6303G", "T6337C", "G6403A", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "A6692G", "A6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6777T", "A6797G", "C6800A", "A6803G", "T6828A", "A6859C", "A6929T", "-6956C", "-6957C", "-6968T", "-6969G", "-6970G", "-6971C", "-6972C", "-6973T", "-6978A", "-6980G", "-6981G", "T6988G", "C6991T", "-7009T", "A7095T", "C7124A", "A7154G", "A7274C", "A7313C", "G7441A", "A7570G", "T7618C", "G7640A", "G7688A", "A7706C", "G7726A", "A7741G", "G8007T", "T8020C", "A8036T", "C8051A", "T8097C", "C8382T", "C8386G", "T8387A", "G8531T", "G8534A", "T8568C"], "INT": ["I101L"], "RT-p51": ["A288S"], "RT-p66": ["V245T", "A288S", "A554T"], "gp120": ["V56I", "I80V", "-116S", "S278G", "D294E", "T308V", "I317V", "F325Y", "Q335H", "T359S", "-368P", "-382G", "D384E", "K474Q"], "gp41": ["I4L", "I135L", "G235V", "I245F", "L265S"], "nef": ["P14S"], "p17": ["R30K", "S67A"], "p24": ["I91V", "N120S", "E180D"], "rev": ["W58R", "Y63F"], "tat": ["T39I", "A58S"], "vif": ["F39V", "T151A"]}, "labels": {"aa": "INT: I101L; RT-p51: A288S; RT-p66: V245T, A288S, A554T; gp120: V56I, I80V, -116S, S278G, D294E, T308V, I317V, F325Y, Q335H, T359S, -368P, -382G, D384E, K474Q; gp41: I4L, I135L, G235V, I245F, L265S; nef: P14S; p17: R30K, S67A; p24: I91V, N120S, E180D; rev: W58R, Y63F; tat: T39I, A58S; vif: F39V, T151A"}}, "children": [{"name": "MN486047", "node_attrs": {"div": 0.2051, "accession": "MN486047", "clade_membership": {"value": "B"}, "country": {"value": "BE"}, "date": {"value": 2016.0}, "Strain_name": {"value": "CY"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T213A", "A214G", "T288C", "-305T", "A379G", "T426C", "A470T", "T473C", "C503G", "C516T", "C558T", "A581G", "G608A", "G615A", "C641G", "G644A", "A661C", "C679T", "C684T", "A685C", "A697G", "A699-", "C700-", "A701-", "G702-", "G703-", "A704-", "A705-", "A706-", "C707-", "T718C", "G818A", "C827T", "T978A", "T992G", "C1137T", "A1157G", "T1172C", "C1187T", "G1192A", "A1242G", "C1243T", "G1268A", "G1311T", "C1316T", "G1397A", "A1430G", "A1463G", "A1475G", "T1483A", "C1523T", "A1529G", "A1544G", "T1547C", "T1681C", "T1723C", "T1728-", "T1729-", "T1730-", "G1731-", "G1732-", "G1733-", "A1743G", "A1756C", "A1765G", "G1766A", "G1778A", "G1794A", "C1828T", "A1839G", "G1840A", "G1846A", "G1858A", "A1903T", "A1907G", "A1918G", "G1968A", "C1987T", "C2083T", "A2200G", "T2206C", "T2302A", "C2326T", "T2369C", "C2386T", "A2395G", "A2403G", "A2459G", "A2460T", "G2462A", "G2473A", "T2499C", "G2539A", "G2548A", "A2627G", "A2629G", "T2654C", "A2699G", "G2710A", "C2714G", "T2737G", "T2788A", "T2829C", "G2830A", "C2831T", "G2833A", "C2845T", "C2863T", "G2872A", "G2887A", "G2914T", "G2951A", "C2978T", "G2984A", "G3004A", "G3016A", "T3059C", "A3080G", "G3088A", "G3091A", "C3095G", "A3097T", "A3124G", "A3164G", "C3175A", "A3224C", "C3225T", "A3230T", "A3238G", "A3292G", "G3334A", "C3376T", "T3380C", "A3409G", "T3424C", "T3449A", "A3456G", "T3492C", "G3494A", "T3497C", "G3553A", "G3562A", "C3610T", "G3664A", "C3691T", "A3697C", "A3703G", "C3712T", "A3787G", "A3805G", "A3862G", "G3869A", "C3892T", "G3896A", "G3907A", "G3925A", "C3962T", "T3977G", "C3995A", "G3997C", "A4003C", "T4006C", "A4107C", "T4126C", "C4159T", "C4321T", "G4376A", "C4667T", "G4684A", "A4692C", "T4712C", "T4727C", "A4773G", "C4820A", "G4887A", "C4911A", "T4912C", "G4913A", "T4919C", "A4950C", "T4952A", "T4969G", "T4976C", "T4991C", "C5050A", "A5051G", "G5062A", "T5084C", "G5087A", "G5099A", "A5112G", "A5128C", "G5187A", "G5195A", "T5206C", "A5215G", "A5233G", "A5236G", "C5242T", "G5305A", "A5335G", "A5336C", "A5345G", "C5358G", "G5366A", "G5437C", "A5447G", "A5462G", "G5463T", "C5554G", "G5557A", "A5567C", "A5622G", "G5626T", "A5631T", "G5635A", "T5636C", "C5686G", "T5687C", "A5689T", "G5711A", "A5720G", "A5721G", "A5728C", "G5729A", "A5748G", "T5841C", "G5842A", "C6004T", "C6007T", "T6026C", "G6029A", "A6030C", "A6045G", "T6046C", "A6065G", "T6085G", "T6100C", "G6121A", "A6132G", "T6155C", "-6170G", "-6171T", "-6172G", "-6175G", "A6179G", "A6192G", "G6195A", "T6202C", "-6204G", "-6205C", "G6206A", "-6207C", "-6209G", "-6210T", "-6211G", "-6212G", "-6213T", "-6214G", "-6220G", "A6226G", "G6232A", "A6235G", "A6259T", "G6261A", "C6262T", "G6267A", "A6268G", "G6277A", "C6278A", "C6293T", "T6295A", "T6298C", "A6304C", "G6323C", "T6325G", "A6333C", "C6336A", "A6338G", "G6346A", "T6395A", "C6416T", "C6446T", "A6475G", "C6482A", "A6589G", "A6594T", "A6595C", "C6612T", "A6617C", "T6641A", "A6649C", "A6654C", "T6658C", "C6673T", "T6721C", "A6734G", "T6735A", "A6767C", "T6769C", "A6780G", "A6781T", "A6789G", "C6790A", "A6801G", "C6807T", "T6808C", "A6811G", "A6841G", "A6844C", "A6865T", "G6871A", "A6886T", "A6900T", "A6921T", "C6935A", "G6963A", "-6975C", "-6979A", "-6982G", "-6983T", "-6985A", "A6986G", "A6989G", "C6993G", "-7006C", "-7008A", "A7037G", "A7046C", "C7078T", "T7086A", "C7087G", "A7088G", "G7089C", "C7094A", "G7101C", "T7106A", "C7127A", "A7152C", "T7153A", "A7155G", "C7158A", "A7183G", "A7189G", "G7190A", "G7235A", "A7269G", "G7310A", "G7311C", "A7312G", "A7322G", "T7325C", "G7343A", "G7373C", "T7433C", "C7463A", "A7532C", "A7604G", "C7605T", "T7606C", "C7625A", "T7630A", "G7633A", "A7666C", "G7676A", "C7684T", "A7689G", "C7690T", "C7701G", "G7712A", "G7720A", "A7722C", "A7734T", "C7742A", "G7777A", "A7799C", "C7801G", "T7867C", "G7871A", "C7874T", "A7880C", "C7906T", "T7921C", "G7929A", "C7935T", "A7936G", "C7938A", "A7974G", "G8001C", "A8006G", "T8008G", "G8018A", "G8055A", "T8103C", "G8105A", "G8144C", "G8173A", "C8220T", "G8245A", "G8255A", "T8257C", "G8264A", "T8268C", "C8277T", "A8288G", "G8330C", "C8331T", "G8342A", "-8366C", "-8370T", "-8371T", "G8372T", "-8373G", "-8374G", "A8378G", "G8388A", "G8393A", "T8426G", "G8427A", "C8451T", "C8460T", "G8487A", "C8491A", "T8492G", "A8494C", "C8503A", "T8543C", "A8622C", "C8640T", "A8643G", "T8646C", "C8651T", "G8654A", "T8666A", "C8676T", "C8727T", "G8753A", "A8754T", "C8755G", "C8756T", "C8775T", "G8793-", "A8794-", "G8795-", "C8796-", "A8797-", "G8798-", "G8799-", "T8800-", "A8801-", "G8802-", "A8803-", "A8804-", "A8812T", "G8846A", "G8848A", "G8861A", "T8864G", "C8868A", "C8886G", "G8922A", "C8948T", "C8971T", "T8974-", "G9008A", "T9029G", "G9030T", "T9068C"], "INT": ["E11D", "V32I", "D41N", "M50I", "L68V", "L74I", "K111T", "V201I"], "RT-p51": ["V35M", "K103R", "K122V", "D123N", "I135T", "I178V", "I202V", "Q207E", "F214L", "V245T", "A286T", "E297K", "S322P", "I329V", "Q334D", "M357V", "T377L", "S379C"], "RT-p66": ["V35M", "K103R", "K122V", "D123N", "I135T", "I178V", "I202V", "Q207E", "F214L", "A286T", "E297K", "S322P", "I329V", "Q334D", "M357V", "T377L", "S379C", "L452I", "K454R", "V466A", "V467I", "S468P"], "gp120": ["N64S", "N71D", "H77Q", "-106V", "-107K", "N109A", "N113S", "S114N", "M126I", "S136N", "M141I", "Q142K", "K150S", "D157Q", "D159I", "N160T", "T161N", "S162G", "S181T", "H188Y", "P210T", "E247V", "A253V", "T255P", "S263T", "E265N", "N267T", "I305L", "K309S", "N312R", "Q316R", "A318V", "I319M", "-328N", "N349I", "Y356F", "Q361K", "-370N", "T371A", "-374T", "-375W", "-376P", "-377N", "N379A", "-381E", "-383S", "T385D", "I395V", "M398L", "S412A", "L414I", "S418T", "L424M", "L425I", "N433T", "N434G", "D446N", "V461I", "K472R"], "gp41": ["G3T", "M7V", "F8L", "A14T", "V24L", "L54M", "K77Q", "T101V", "L108M", "D109E", "E121D", "D125N", "D129S", "N133S", "E137K", "N140T", "K144M", "Q147K", "N166Q", "V190I", "L191F", "I193L", "P211L", "A212D", "E224G", "R233T", "D239N", "S251N", "V267A", "A268T", "A281L", "V318I", "V321I", "V322A", "I329V", "A343L"], "nef": ["-10F", "-11G", "V16I", "D28E", "G29R", "H40Y", "A49T", "A50E", "E63D", "K94Q", "I101V", "Y102H", "D108E", "P129S", "T138C", "Q152A", "V153I", "E155-", "A156-", "N157-", "E158-", "M168I", "S169N", "M173I", "D174E", "P176T", "K178R", "Q182V"], "p17": ["K15R", "L75F", "V94I", "D102E", "N109T", "A115V", "Q117S", "D121G", "T122-", "G123-", "N124-", "V128A"], "p2": ["I13M"], "p24": ["L83M", "H87Q", "R154K", "T171V", "A194S"], "p6": ["L1P", "F15S", "F17E", "G18-", "E19-", "T22A", "Q26P", "E29G", "A39T", "S50L"], "p7": ["F6Y"], "pro": ["K14R", "E35D", "N37D", "R57K", "L63P"], "rev": ["I18L", "S30G", "Q51H", "S54A", "G57E", "S86N", "S99T", "V109I"], "tat": ["A21P", "N24S", "K29S", "Q60E", "N64T", "A74T", "Q76W", "P77T"], "vif": ["K36Q", "K63E", "D78E", "G101S", "L109T", "N122Q", "I128R", "T155K", "R159K", "K176E", "K181T"], "vpr": ["Q3R", "Q8H", "S28N", "Q77R", "R85G"], "vpu": ["V10T", "L27A", "I28L", "R35K", "K38R", "R41Q", "V79I"]}, "labels": {"aa": "INT: E11D, V32I, D41N, M50I, L68V, L74I, K111T, V201I; RT-p51: V35M, K103R, K122V, D123N, I135T, I178V, I202V, Q207E, F214L, V245T, A286T, E297K, S322P, I329V, Q334D, M357V, T377L, S379C; RT-p66: V35M, K103R, K122V, D123N, I135T, I178V, I202V, Q207E, F214L, A286T, E297K, S322P, I329V, Q334D, M357V, T377L, S379C, L452I, K454R, V466A, V467I, S468P; gp120: N64S, N71D, H77Q, -106V, -107K, N109A, N113S, S114N, M126I, S136N, M141I, Q142K, K150S, D157Q, D159I, N160T, T161N, S162G, S181T, H188Y, P210T, E247V, A253V, T255P, S263T, E265N, N267T, I305L, K309S, N312R, Q316R, A318V, I319M, -328N, N349I, Y356F, Q361K, -370N, T371A, -374T, -375W, -376P, -377N, N379A, -381E, -383S, T385D, I395V, M398L, S412A, L414I, S418T, L424M, L425I, N433T, N434G, D446N, V461I, K472R; gp41: G3T, M7V, F8L, A14T, V24L, L54M, K77Q, T101V, L108M, D109E, E121D, D125N, D129S, N133S, E137K, N140T, K144M, Q147K, N166Q, V190I, L191F, I193L, P211L, A212D, E224G, R233T, D239N, S251N, V267A, A268T, A281L, V318I, V321I, V322A, I329V, A343L; nef: -10F, -11G, V16I, D28E, G29R, H40Y, A49T, A50E, E63D, K94Q, I101V, Y102H, D108E, P129S, T138C, Q152A, V153I, E155-, A156-, N157-, E158-, M168I, S169N, M173I, D174E, P176T, K178R, Q182V; p17: K15R, L75F, V94I, D102E, N109T, A115V, Q117S, D121G, T122-, G123-, N124-, V128A; p2: I13M; p24: L83M, H87Q, R154K, T171V, A194S; p6: L1P, F15S, F17E, G18-, E19-, T22A, Q26P, E29G, A39T, S50L; p7: F6Y; pro: K14R, E35D, N37D, R57K, L63P; rev: I18L, S30G, Q51H, S54A, G57E, S86N, S99T, V109I; tat: A21P, N24S, K29S, Q60E, N64T, A74T, Q76W, P77T; vif: K36Q, K63E, D78E, G101S, L109T, N122Q, I128R, T155K, R159K, K176E, K181T; vpr: Q3R, Q8H, S28N, Q77R, R85G; vpu: V10T, L27A, I28L, R35K, K38R, R41Q, V79I"}}}, {"name": "MN691961", "node_attrs": {"div": 0.20280000000000004, "accession": "MN691961", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2016.0}, "Strain_name": {"value": "PID1683.PBMC_M18_03_WIPF1_F1F4_PBio"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A263-", "C264-", "G265-", "G266-", "C267-", "A268-", "A269-", "G270-", "A271-", "G272-", "G273-", "C274-", "G275-", "A276-", "G277-", "G278-", "G279-", "G280-", "C281-", "G282-", "G283-", "C284-", "G285-", "A286-", "C287-", "T288-", "G289-", "G290-", "T291-", "G292-", "A293-", "G294-", "T295-", "A296-", "C297-", "G298-", "C299-", "C300-", "A301-", "A302-", "A303-", "A304-", "T306-", "T307-", "T308-", "T309-", "G310-", "A311-", "C312-", "T313-", "A314-", "G317A", "A371T", "A399C", "T434C", "A435C", "T476C", "T495G", "A499C", "A571T", "T572C", "G579A", "C641T", "A674C", "C713T", "T749C", "G752A", "A758G", "A779G", "A791G", "G810A", "A887G", "A932G", "C950T", "G956A", "A991C", "G1019A", "A1025C", "T1052A", "G1077A", "G1078C", "A1173G", "C1174T", "A1199G", "C1295T", "T1299C", "G1301A", "T1325C", "G1328A", "A1337G", "G1346A", "A1382T", "C1403T", "C1406A", "G1472A", "G1474A", "A1498G", "G1499A", "A1500C", "A1528T", "G1543A", "A1565G", "A1592G", "C1598T", "A1614G", "C1615A", "A1657C", "C1744T", "A1745G", "T1752C", "C1767A", "T1771A", "G1784A", "A1841G", "G1920A", "C1986T", "T1996C", "T2129C", "A2161G", "A2182G", "A2223G", "G2224A", "A2242G", "T2257C", "C2263T", "G2273A", "A2286G", "C2296T", "A2314G", "A2329G", "T2338C", "A2407G", "A2459C", "A2460C", "A2482C", "G2518A", "A2519G", "A2524G", "T2581C", "A2627C", "G2660A", "A2727G", "G2728T", "T2829A", "G2947A", "G2969A", "A2972G", "G2995A", "A3010G", "A3031G", "A3079G", "A3096T", "A3097G", "G3162A", "G3173A", "C3223T", "A3229G", "A3258G", "T3262C", "A3265G", "A3292C", "G3293C", "C3294T", "T3412C", "G3490A", "T3541C", "C3542A", "C3589T", "G3643A", "G3694A", "A3736G", "T3757A", "A3775G", "T3793C", "C3808A", "A3934G", "A3952G", "T4024C", "A4084G", "C4123T", "C4146A", "G4186A", "A4222G", "A4246G", "G4252A", "A4255G", "A4261T", "C4475A", "A4535C", "T4537G", "C4569T", "A4650C", "A4652C", "T4678G", "T4679G", "A4692G", "A4697G", "A4725C", "A4751C", "C4754T", "G4766A", "T4769A", "A4773C", "A4774G", "A4775G", "A4782G", "T4799C", "G4816A", "G4835T", "T4952G", "A4974T", "G4975A", "A4990T", "A5021G", "G5024A", "A5033C", "T5047A", "A5049G", "A5056T", "A5065G", "A5085C", "C5086A", "G5114C", "A5159G", "T5170C", "G5179A", "T5188G", "T5228C", "A5230G", "T5237C", "T5314C", "A5355-", "C5356-", "T5357-", "G5359A", "A5362C", "G5363A", "A5385C", "T5415C", "G5463A", "T5487C", "A5495G", "A5499G", "C5552A", "A5558G", "G5561A", "A5567G", "T5568C", "T5576A", "T5578C", "G5626A", "A5637G", "A5640T", "C5686A", "G5747T", "G5755T", "A5781G", "A5796G", "T5826C", "T5829C", "G5839A", "T5860A", "A5866C", "C5884A", "C5916G", "A5926G", "T5956G", "C5958A", "T5964C", "T5974C", "T6024A", "T6151C", "-6170T", "-6171A", "-6172T", "-6175T", "A6186C", "-6203G", "-6204A", "-6205G", "-6207G", "A6221C", "C6238T", "A6265G", "A6275G", "C6278-", "A6279-", "G6280-", "A6282C", "T6315C", "G6326A", "A6327G", "T6328G", "A6330G", "T6343C", "A6394G", "G6430A", "T6436C", "T6457A", "A6471G", "T6511C", "A6544C", "C6559T", "G6581A", "T6602A", "G6605A", "A6609G", "G6611A", "C6612A", "C6618T", "G6631T", "G6634A", "T6641G", "A6647G", "A6730C", "G6743A", "A6744G", "T6745A", "C6766T", "G6802A", "A6817G", "A6823G", "C6824A", "-6830G", "-6831G", "-6832G", "A6836-", "A6837-", "T6838-", "A6855G", "C6874T", "A6877T", "A6881G", "T6885C", "A6886C", "G6894C", "A6936G", "-6975A", "G6977A", "-6979T", "-6982T", "-6983A", "-6985T", "A6986T", "A6987G", "A6992G", "C6993A", "-6994T", "-6995A", "-6996C", "-6997A", "-6998G", "-6999G", "-7000A", "-7001G", "-7002C", "-7003A", "-7004G", "-7005A", "-7006G", "-7008T", "G7026A", "A7027C", "A7032G", "A7040G", "T7047A", "G7054A", "G7058A", "G7072A", "A7090C", "A7096G", "G7126A", "A7129C", "A7149T", "C7156G", "G7160A", "G7162T", "C7165T", "C7170T", "G7181C", "G7182A", "G7197A", "A7234G", "A7238G", "A7241C", "G7256A", "A7315G", "A7322T", "A7376G", "G7390A", "A7445C", "C7486T", "A7487G", "G7495A", "T7575A", "T7579C", "T7622A", "A7668G", "T7691A", "A7700G", "A7710G", "A7722T", "A7732C", "T7748C", "G7759C", "G7760A", "A7800G", "C7805T", "A7840G", "T7852C", "A7873G", "G7885A", "C7898A", "A7918G", "G7929T", "G7937A", "C7941A", "G7965A", "A7977G", "G7987A", "A7988G", "A7998G", "G8017A", "A8019C", "A8029G", "G8030C", "A8032T", "T8035C", "T8145C", "T8159A", "T8164C", "C8165A", "A8180G", "C8213T", "T8218C", "C8223T", "A8230T", "G8264C", "G8267A", "G8276A", "A8309G", "A8311G", "G8335A", "T8348G", "T8355G", "G8365T", "-8366G", "A8367G", "G8368C", "-8370G", "-8371C", "G8372C", "T8375-", "G8377A", "A8378C", "C8437T", "A8438C", "A8458G", "C8485T", "A8486-", "G8487-", "C8488-", "A8489-", "G8490-", "C8491-", "G8508A", "C8514G", "G8537A", "C8552T", "A8573G", "C8590G", "T8595C", "A8655C", "A8660G", "C8684T", "C8688A", "G8739A", "A8762G", "C8791A", "G8814A", "A8844G", "C8867T", "C8869T", "G8875A", "G8882A", "T8887A", "A8912G", "T8913G", "A8917G", "C8934A", "T8935A", "G8970A", "C8975A", "T8976G", "G8991A", "A9005G", "C9017T", "T9029A"], "INT": ["T124N", "L234I", "N254Q", "A265V"], "RT-p51": ["V35I", "K43R", "V60I", "K64R", "K122P", "I142V", "I178L", "V189I", "K211S", "V245K", "V292I", "I293V", "Q334L", "R356K", "A360T", "K388R", "E399D", "A400L"], "RT-p66": ["V35I", "K43R", "V60I", "K64R", "K122P", "I142V", "I178L", "V189I", "K211S", "T245K", "V292I", "I293V", "Q334L", "R356K", "A360T", "K388R", "E399D", "A400L", "H483N"], "gp120": ["E4D", "T21S", "D34E", "T35K", "V37A", "V57E", "-106Y", "-107N", "N109T", "N111T", "-117E", "-118G", "-119Q", "K123-", "I137M", "K138R", "M141V", "Q142T", "K143-", "K150R", "V154A", "N158R", "D159G", "N160R", "N201K", "N206S", "Q230H", "V243I", "S250T", "D251N", "N252S", "A253N", "T255I", "Q259H", "S263A", "D297R", "Q316K", "Q324K", "-326G", "N334S", "I343V", "V344A", "S347T", "Q361R", "-370S", "-372W", "-373P", "-374N", "-375N", "-376G", "-377T", "N378W", "T380D", "-381T", "-383A", "T385I", "R391N", "K393R", "I396V", "M398K", "V402I", "M406I", "T416R", "L424I", "N433E", "N434T", "E436T", "T439I", "G443Q", "R448K", "K462E", "I463L", "V468I"], "gp41": ["M7L", "T25A", "I48L", "I62V", "L91H", "S107T", "K122R", "D129N", "L130I", "N133A", "E136G", "N140I", "E143D", "L152F", "D153N", "N166S", "Q199K", "H209L", "A212T", "P213Q", "G221E", "E225G", "R229G", "D232G", "V235I", "D239A", "A243P", "W286R", "L288I", "S293G", "L304F", "T307I", "V321L", "V322I", "A325T", "F326C", "I336V"], "nef": ["W5G", "S8M", "S9A", "-10A", "-11D", "G12-", "A32V", "K39R", "T48I", "A49N", "A50-", "T51-", "D54A", "A56T", "L58V", "E62Q", "A83G", "K105Q", "H116N", "V133I", "P150Q", "E158K", "M168V", "P176L", "F191V", "H192R", "L198K"], "p1": ["H9S"], "p17": ["E12D", "I34L", "S54A", "E55A", "Y79F", "V82I", "K113N"], "p24": ["V27I", "H87P", "M96I", "E98D", "G116T", "T148V"], "p6": ["T22M", "S25P", "P30T", "I31K"], "p7": ["R3K", "K11R", "T12P", "E21V", "R26K", "T50D"], "pro": ["I15V", "R41K"], "rev": ["L13I", "T15A", "V16I", "I18A", "F21I", "S30N", "E47R", "R53H", "G57S", "S61A", "T62S", "F63L", "V104E", "S106H", "E111G"], "tat": ["K40R", "P59H", "N61G", "S62N", "N64S", "V67D", "S68P", "A74S", "E86K"], "vif": ["K22H", "I31R", "K33R", "K36E", "T47P", "D61E", "K63R", "I66V", "R77K", "Q83H", "N122K", "S130Y", "Y135F", "I154K", "T155A", "K157I", "K160R", "T167Q", "K176N"], "vpr": ["A4P", "T19A", "S28R", "Y45H", "T84Q", "R85P", "Q86-", "S94R"], "vpu": ["L7I", "L27I", "R47I", "A50S", "D78N"]}, "labels": {"aa": "INT: T124N, L234I, N254Q, A265V; RT-p51: V35I, K43R, V60I, K64R, K122P, I142V, I178L, V189I, K211S, V245K, V292I, I293V, Q334L, R356K, A360T, K388R, E399D, A400L; RT-p66: V35I, K43R, V60I, K64R, K122P, I142V, I178L, V189I, K211S, T245K, V292I, I293V, Q334L, R356K, A360T, K388R, E399D, A400L, H483N; gp120: E4D, T21S, D34E, T35K, V37A, V57E, -106Y, -107N, N109T, N111T, -117E, -118G, -119Q, K123-, I137M, K138R, M141V, Q142T, K143-, K150R, V154A, N158R, D159G, N160R, N201K, N206S, Q230H, V243I, S250T, D251N, N252S, A253N, T255I, Q259H, S263A, D297R, Q316K, Q324K, -326G, N334S, I343V, V344A, S347T, Q361R, -370S, -372W, -373P, -374N, -375N, -376G, -377T, N378W, T380D, -381T, -383A, T385I, R391N, K393R, I396V, M398K, V402I, M406I, T416R, L424I, N433E, N434T, E436T, T439I, G443Q, R448K, K462E, I463L, V468I; gp41: M7L, T25A, I48L, I62V, L91H, S107T, K122R, D129N, L130I, N133A, E136G, N140I, E143D, L152F, D153N, N166S, Q199K, H209L, A212T, P213Q, G221E, E225G, R229G, D232G, V235I, D239A, A243P, W286R, L288I, S293G, L304F, T307I, V321L, V322I, A325T, F326C, I336V; nef: W5G, S8M, S9A, -10A, -11D, G12-, A32V, K39R, T48I, A49N, A50-, T51-, D54A, A56T, L58V, E62Q, A83G, K105Q, H116N, V133I, P150Q, E158K, M168V, P176L, F191V, H192R, L198K; p1: H9S; p17: E12D, I34L, S54A, E55A, Y79F, V82I, K113N; p24: V27I, H87P, M96I, E98D, G116T, T148V; p6: T22M, S25P, P30T, I31K; p7: R3K, K11R, T12P, E21V, R26K, T50D; pro: I15V, R41K; rev: L13I, T15A, V16I, I18A, F21I, S30N, E47R, R53H, G57S, S61A, T62S, F63L, V104E, S106H, E111G; tat: K40R, P59H, N61G, S62N, N64S, V67D, S68P, A74S, E86K; vif: K22H, I31R, K33R, K36E, T47P, D61E, K63R, I66V, R77K, Q83H, N122K, S130Y, Y135F, I154K, T155A, K157I, K160R, T167Q, K176N; vpr: A4P, T19A, S28R, Y45H, T84Q, R85P, Q86-, S94R; vpu: L7I, L27I, R47I, A50S, D78N"}}}]}]}]}]}, {"name": "B_NODE_0000009", "node_attrs": {"div": 0.14294, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C641T", "A1643G", "A4966G", "C5651T", "T5826C", "-6207G", "G6269A", "-6703A", "-6970G", "A7668G", "C7690A", "G7726A", "C7801A", "T8008A", "T8145C", "G8323A", "A8494C"], "RT-p51": ["V245M"], "RT-p66": ["V245M"], "gp120": ["K123-"], "gp41": ["S157N", "L304F"], "pro": ["L63P"], "rev": ["S54T"], "vif": ["H127R"], "vpr": ["V37I"], "vpu": ["A15V"]}, "labels": {"aa": "RT-p51: V245M; RT-p66: V245M; gp120: K123-; gp41: S157N, L304F; pro: L63P; rev: S54T; vif: H127R; vpr: V37I; vpu: A15V"}}, "children": [{"name": "B_NODE_0000010", "node_attrs": {"div": 0.14798, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G265A", "A424G", "T534G", "G615A", "G944A", "G1271T", "G2548A", "C3376T", "G3490A", "T3497A", "G3685A", "G3737A", "T3829C", "G3859A", "T4585C", "G4861A", "G5087A", "A5122G", "C5495A", "T5584C", "C5620A", "A5621C", "A5622C", "C5867A", "A5869C", "-6170T", "-6175G", "-6205C", "A6221G", "G6267A", "G6329-", "A6330-", "A6333-", "G6379A", "C6499T", "G6593A", "-6830G", "A6932T", "-6957A", "A7152G", "T7691G", "T7921A", "C7941A", "A8006G", "A8029G", "G8030A", "G8050A", "C8213T", "-8371T", "C8440T", "A8503C", "T8666C", "T8747C", "G8807A", "T8883C", "T8915C"], "RT-p66": ["S468T", "V548I"], "gp120": ["Q5N", "-107K", "D294Q", "R307G", "T360S", "-372W"], "gp41": ["V24I", "D129K", "F206L", "A243T"], "nef": ["A33V"], "p17": ["S67A", "V94I"], "p24": ["E180D"], "rev": ["S61D", "A68T"], "tat": ["T40K", "S70P"], "vif": ["R92K", "T151A", "K179R"], "vpu": ["Q5T"]}, "labels": {"aa": "RT-p66: S468T, V548I; gp120: Q5N, -107K, D294Q, R307G, T360S, -372W; gp41: V24I, D129K, F206L, A243T; nef: A33V; p17: S67A, V94I; p24: E180D; rev: S61D, A68T; tat: T40K, S70P; vif: R92K, T151A, K179R; vpu: Q5T"}}, "children": [{"name": "MW881768", "node_attrs": {"div": 0.21445999999999998, "accession": "MW881768", "clade_membership": {"value": "B"}, "country": {"value": "BE"}, "date": {"value": 2016.0}, "Strain_name": {"value": "P8_G_1_SMG1P2"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "G196-", "G197-", "A198-", "C199-", "T200-", "T201-", "G202-", "A203-", "A204-", "A205-", "G206-", "C207-", "G208-", "A209-", "A210-", "A211-", "G212-", "T213-", "A214-", "A215-", "G290A", "A353G", "G369A", "A378G", "G379C", "A399C", "A423C", "G485T", "T495G", "C496G", "A500G", "C516T", "A527G", "T539C", "T560C", "A585G", "C586T", "G599A", "G607A", "A619G", "C623T", "G644A", "A670G", "G677A", "C713T", "A758G", "A764G", "C771G", "T789C", "T794C", "C897T", "C902T", "A905G", "G908A", "T936C", "T978C", "T983C", "T988C", "G989A", "T992G", "G1019A", "A1025G", "C1040T", "G1077A", "G1078C", "A1097G", "C1118A", "C1136T", "A1145G", "A1157G", "C1182T", "G1184A", "T1214C", "C1220T", "C1235T", "A1289T", "A1292G", "G1298A", "G1313A", "C1316T", "A1337G", "T1358C", "C1403T", "C1406G", "T1427C", "A1449C", "T1452C", "G1455A", "C1459A", "G1469A", "A1473G", "G1474A", "C1478T", "A1480G", "T1481A", "T1483A", "A1485G", "G1495A", "A1498G", "C1501G", "A1526G", "A1528C", "C1615A", "A1622G", "G1625A", "G1643A", "G1661A", "G1687A", "A1714C", "G1726A", "A1746C", "G1757A", "G1763A", "C1775A", "A1777G", "A1781G", "C1782A", "T1783G", "A1793G", 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"K254N", "E262D", "E265Q", "T269S", "K277R", "Q300R", "T308E", "K309Q", "N311H", "Q316E", "I317V", "K319R", "-326G", "-328N", "I331V", "V332-", "N334Q", "Q335P", "S347T", "T359S", "Q361K", "-368D", "-370N", "N379G", "-381E", "-382G", "-383N", "E401K", "Q414P", "R416K", "N433P", "E436S", "T439I", "D446N", "K462Q"], "gp41": ["V2A", "I4L", "M7L", "V72I", "L108M", "D109H", "E119Q", "D125N", "K129Q", "L130T", "T133N", "N160T", "I173L", "V190I", "P213R", "R236Q", "D239N", "D247T", "V267A", "A268T", "R276H", "A281I", "L282I", "N287S", "L289I", "L296I", "N298S", "A306T", "T307I", "I309V", "V318I", "V321I", "V322A", "Q323N", "A325I", "I329F", "A343L"], "nef": ["S9M", "-10R", "V16I", "E24Q", "D28E", "G29A", "K39R", "H40R", "S46N", "A53E", "D54A", "P129K", "V133I", "Y135F", "V148L", "E151D", "N162K", "M168V", "Q170L", "E177D", "R178G", "E179Q", "M182V", "R188L", "F191Y", "H192R", "H199Y"], "p17": ["E12K", "R15A", "S54G", "T84V", "K95R", "K112R"], "p2": ["N9H", "S10P", "A11T", "T12N"], "p24": ["P14A", "V86A", "H87Q", "M96I", "G116T"], "p6": ["S3N", "E12A", "R16K", "T23P", "D32E", "K33R", "L35R", "A39D", "K42R", "S50L"], "p7": ["M1I", "R3E", "N5R", "F6Y", "R7G", "R10K", "K11R", "T12S", "E21A", "T50N"], "pro": ["G16E", "E35D", "M36I", "N37D", "K43R", "I62V", "P63S", "I64L", "A71V"], "rev": ["S8N", "K14R", "T15A", "P31Q", "S56G", "G57Q", "Y63H", "G65D", "S86N", "S99N", "P100H", "P107H", "A108T", "T114D"], "tat": ["K19R", "N24S", "K40R", "G42A", "A58S", "Q60P", "D61G", "Q63K", "T64I", "H65N", "S68P", "A74T", "R78G"], "vif": ["R19S", "T20A", "K36R", "F39I", "R41K", "S46N", "T47H", "I51V", "G101N", "E117D", "I124L", "R127H", "I128R", "I154T", "T155K", "P156S", "I159T", "K176T", "K181R", "G182D"], "vpr": ["Q3H", "A4T", "I37T", "G41N", "Y45H", "I63M", "A93T"], "vpu": ["Q2I", "A8S", "V10A", "V14I", "I28L", "K38R", "R47I", "M67R", "H74L", "D80N"]}, "labels": {"aa": "INT: D3E, E11D, I72V, S119G, T122I, G163E, S195T, E198D, V201I; RT-p51: V8I, K20R, K122E, D123S, I135T, K173E, Q207L, M245Q, K277R, V293I, P294S, K323R, I329L, M357T, A360T, K390R, E432D; RT-p66: V8I, K20R, K122E, D123S, I135T, K173E, Q207L, M245Q, K277R, V293I, P294S, K323R, I329L, M357T, A360T, K390R, E432D, D460N, R461K, V467I, H483Y, L491S, L503M, L517I, I556V; gp120: A2T, E4G, T21N, V56I, V57N, E59K, M67A, K69E, Q86E, -106C, N109G, T110S, T112S, N113C, S114T, -116S, -117S, -118N, -119G, -120T, -121M, -123D, S130T, K138Q, M141R, P155S, D159-, N160-, V180I, N201K, P210L, K212R, E241D, E247K, K254N, E262D, E265Q, T269S, K277R, Q300R, T308E, K309Q, N311H, Q316E, I317V, K319R, -326G, -328N, I331V, V332-, N334Q, Q335P, S347T, T359S, Q361K, -368D, -370N, N379G, -381E, -382G, -383N, E401K, Q414P, R416K, N433P, E436S, T439I, D446N, K462Q; gp41: V2A, I4L, M7L, V72I, L108M, D109H, E119Q, D125N, K129Q, L130T, T133N, N160T, I173L, V190I, P213R, R236Q, D239N, D247T, V267A, A268T, R276H, A281I, L282I, N287S, L289I, L296I, N298S, A306T, T307I, I309V, V318I, V321I, V322A, Q323N, A325I, I329F, A343L; nef: S9M, -10R, V16I, E24Q, D28E, G29A, K39R, H40R, S46N, A53E, D54A, P129K, V133I, Y135F, V148L, E151D, N162K, M168V, Q170L, E177D, R178G, E179Q, M182V, R188L, F191Y, H192R, H199Y; p17: E12K, R15A, S54G, T84V, K95R, K112R; p2: N9H, S10P, A11T, T12N; p24: P14A, V86A, H87Q, M96I, G116T; p6: S3N, E12A, R16K, T23P, D32E, K33R, L35R, A39D, K42R, S50L; p7: M1I, R3E, N5R, F6Y, R7G, R10K, K11R, T12S, E21A, T50N; pro: G16E, E35D, M36I, N37D, K43R, I62V, P63S, I64L, A71V; rev: S8N, K14R, T15A, P31Q, S56G, G57Q, Y63H, G65D, S86N, S99N, P100H, P107H, A108T, T114D; tat: K19R, N24S, K40R, G42A, A58S, Q60P, D61G, Q63K, T64I, H65N, S68P, A74T, R78G; vif: R19S, T20A, K36R, F39I, R41K, S46N, T47H, I51V, G101N, E117D, I124L, R127H, I128R, I154T, T155K, P156S, I159T, K176T, K181R, G182D; vpr: Q3H, A4T, I37T, G41N, Y45H, I63M, A93T; vpu: Q2I, A8S, V10A, V14I, I28L, K38R, R47I, M67R, H74L, D80N"}}}, {"name": "B_NODE_0000011", "node_attrs": {"div": 0.16498000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A562G", "T572C", "G614C", "G687A", "G709A", "G743A", "C827T", "T1001A", "A1070G", "G1268A", "A1715G", "C1751A", "T1752C", "G1784A", "C1853T", "T2005C", "A2410T", "T2443C", "C2452T", "A2579T", "A2727G", "A2884G", "C2909G", "A2920G", "C2927G", "G3019A", "A3025G", "A3096T", "T3112C", "T3132A", "T3399A", "C3545T", "A3703G", "T3946C", "T4079C", "A4105G", "C4132A", "A4148T", "G4279A", "C4501T", "G4735A", "T4832C", "A4888G", "A4958T", "A4968G", "A4988T", "A5059G", "T5062G", "A5085G", "A5155G", "C5214T", "C5227G", "A5230G", "T5251A", "C5398T", "T5466C", "G5532A", "T5576A", "C5602A", "A5625T", "A5640C", "A5781T", "C5797T", "-5800A", "-5804A", "-5805G", "-5806A", "-5807T", "-5809G", "-5810G", "G5902A", "T6046C", "G6088A", "-6171T", "-6172G", "-6180C", "G6201A", "-6203G", "-6204C", "A6222G", "A6270C", "A6275G", "C6278-", "A6279-", "G6280-", "A6286C", "T6337C", "C6382T", "G6463A", "G6535A", "C6563T", "A6594G", "A6595C", "A6695C", "T6720G", "T6721G", "A6734C", "A6809G", "A6833-", "T6835G", "T6838C", "-6956C", "-6969G", "A7021T", "A7040G", "G7089A", "C7124T", "A7402G", "A7428G", "C7429A", "G7688A", "T7692A", "A7743T", "T7774C", "A7915G", "A7953G", "A8008G", "C8009A", "C8044G", "G8107A", "G8181T", "G8280A", "G8304C", "-8370A", "G8385A", "C8386G", "C8590G", "C8690T", "G8789T", "T8813C", "G8814A", "C8840T", "G8858A", "C8907T", "C8934A", "T8935A", "C9018A", "T9046G", "C9047T", "G9095A", "T9098C", "G9132A"], "INT": ["S119R", "T125S"], "RT-p51": ["S162C", "K211R", "P272A", "Q278E", "Q334L", "F346Y", "V435E"], "RT-p66": ["S162C", "K211R", "P272A", "Q278E", "Q334L", "F346Y", "V435E"], "gp120": ["N71D", "-106L", "-116N", "-118S", "D139T", "M141V", "Q142-", "E144D", "E247S", "I281L", "F289W", "K319E", "-326E", "-368H", "-370S", "I396V", "R412K", "N434T"], "gp41": ["N42R", "L130E", "Q147L", "N166Q", "H209R", "P213Q", "D217G", "S293I", "F326Y", "R334T"], "nef": ["S8C", "-10I", "A15R", "A83G", "E158K", "L198K"], "p17": ["K76R", "A118T", "S125N"], "p6": ["S25P"], "rev": ["G6E", "F21I", "T54E", "R66G", "E87K", "E111D"], "tat": ["T39M", "V67D", "T82A"], "vif": ["R50K", "I128V", "E134D", "K158R", "I159R", "T167A", "N190S"], "vpu": ["L64F", "V65M"]}, "labels": {"aa": "INT: S119R, T125S; RT-p51: S162C, K211R, P272A, Q278E, Q334L, F346Y, V435E; RT-p66: S162C, K211R, P272A, Q278E, Q334L, F346Y, V435E; gp120: N71D, -106L, -116N, -118S, D139T, M141V, Q142-, E144D, E247S, I281L, F289W, K319E, -326E, -368H, -370S, I396V, R412K, N434T; gp41: N42R, L130E, Q147L, N166Q, H209R, P213Q, D217G, S293I, F326Y, R334T; nef: S8C, -10I, A15R, A83G, E158K, L198K; p17: K76R, A118T, S125N; p6: S25P; rev: G6E, F21I, T54E, R66G, E87K, E111D; tat: T39M, V67D, T82A; vif: R50K, I128V, E134D, K158R, I159R, T167A, N190S; vpu: L64F, V65M"}}, "children": [{"name": "JF932480", "node_attrs": {"div": 0.20501000000000003, "accession": "JF932480", "clade_membership": {"value": "B"}, "country": {"value": "CN"}, "date": {"value": 2008.0}, "Strain_name": {"value": "CBJC500"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A214G", "A216G", "A242G", "C260T", "A263G", "G278A", "G280-", "A301G", "-305A", "T357A", "A368C", "G379A", "G395A", "A411C", "G413C", "A470G", "G518A", "G520A", "G607A", "C700A", "C713T", "C746T", "T749C", "C771T", "A774C", "G810A", "C830T", "A836G", "A1002G", "A1017C", "G1139A", "A1173G", "C1174T", "C1229T", "A1259G", "A1307G", "T1344C", "G1346A", "T1358C", "T1452C", "C1459A", "C1460T", "A1461G", "C1478A", "G1486A", "A1500G", "T1505C", "G1508A", "A1529G", "A1543G", "G1553A", "A1580G", "A1588G", "A1607G", "A1644C", "A1664G", "T1682C", "A1736G", "C1767T", "G1778A", "G1794A", "T1796C", "C1833A", "T1888C", "A1907G", "G1920A", "T1978G", "C1979A", "G1981C", "C1985T", "A1988C", "C1996T", "T1999C", "A2008G", "G2009A", "A2012G", "T2013C", "A2026G", "G2027A", "T2092C", "T2236C", "T2245C", "A2329G", "G2341A", "A2419T", "T2440C", "T2449C", "C2464A", "A2471C", "A2498G", "T2521C", "A2614G", "C2635T", "A2693G", "G2710A", "G2728C", "A2734G", "T2788G", "A2842G", "C2863T", "A2919G", "G2921A", "C2953T", "T3049C", "A3109T", "A3195T", "A3218G", "A3247G", "G3344A", "T3345C", "T3469C", "C3508T", "G3529A", "G3562A", "T3566G", "A3595G", "G3643A", "A3715G", "A3727G", "A3745G", "G3755A", "A3868G", "G3925A", "A3937G", "A3955G", "T3977G", "G4046A", "C4072T", "C4138T", "T4144C", "A4174G", "A4219G", "A4222G", "T4234A", "A4243T", "A4407G", "A4644G", "T4674C", "A4721G", "A4745G", "A4790C", "A4858G", "G4862A", "C4883G", "A4964G", "T4976C", "T4985C", "A4993T", "T5018C", "A5046G", "A5048C", "C5050A", "G5143A", "G5179A", "T5188G", "A5215C", "G5226A", "T5237C", "T5292C", "A5312G", "T5470C", "A5493G", "C5530A", "C5549A", "G5565A", "C5569A", "A5576C", "C5614G", "A5620G", "C5621T", "T5627C", "G5647A", "G5653A", "A5680T", "A5715G", "A5718G", "A5720G", "A5722G", "C5727T", "A5911T", "C5917T", "T5964C", "G5972A", "A6025C", "A6030G", "A6044C", "A6065G", "T6154C", "C6189A", "C6190T", "A6192C", "T6193C", "A6208T", 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"G7589A", "A7604G", "G7628A", "A7629G", "G7631C", "C7651T", "T7748C", "A7755C", "G7773A", "A7782G", "A7798T", "A7799C", "A7816C", "A7818G", "T7879C", "G7883A", "G7885A", "G7937A", "A7988C", "G7989A", "A8011T", "G8018A", "T8020C", "A8023C", "A8036T", "A8043G", "C8047T", "G8105C", "C8106T", "G8136T", "A8143G", "A8152G", "G8204A", "T8218C", "T8227C", "A8228G", "T8239A", "A8273G", "A8275G", "A8284G", "A8288T", "C8291A", "C8293T", "C8296T", "A8311C", "T8321C", "A8323C", "A8364T", "T8371A", "T8375-", "C8382T", "T8387G", "A8403G", "G8404A", "G8407A", "G8409A", "A8484G", "G8490-", "C8491-", "T8492-", "A8493-", "C8494-", "T8495-", "C8503A", "C8509T", "C8514T", "G8537A", "A8662G", "G8717T", "A8726G", "T8740C", "C8741T", "A8746T", "A8750T", "T8860C", "G8861A", "A8885G", "G8922A", "A8930C", "A8935G", "G8936A", "A8947T", "C8948T", "G8994A", "T9029C", "G9040A"], "INT": ["M50I", "I60M", "L68V", "A91T", "K156N", "K211R"], "RT-p51": ["D123E", "K126Q", "I135V", "T200A", "R211S", "M245V", "K275R", "V276I", "Q367L", "I375V", "V417T"], "RT-p66": ["D123E", "K126Q", "I135V", "T200A", "R211S", "M245V", "K275R", "V276I", "Q367L", "I375V", "V417T", "L491V", "A554T"], "gp120": ["E19D", "V37A", "V40I", "E59G", "N64H", "N109T", "T112N", "N113T", "-117A", "-119S", "-120M", "-121T", "-123G", "G124R", "-142N", "K143D", "D144-", "L151Y", "V153I", "V154E", "P155S", "D159S", "N160T", "I166T", "S167K", "A191T", "D202N", "K204T", "K212T", "E240G", "T255V", "H280P", "R287K", "A291T", "T308S", "K309Q", "N312K", "K315I", "A318T", "R322K", "Q324R", "N327S", "-328K", "T330-", "V332I", "N334K", "S336H", "S347H", "T366S", "W372R", "T385K", "T387I", "M398I", "E401G", "M406I", "K412E", "R416S", "S418L", "N420K", "N432G", "N433G", "T434R", "E436A", "T437S", "T439N", "E464K", "V468I"], "gp41": ["A14T", "I24M", "I37M", "A96T", "T101A", "D109S", "E110Q", "K122R", "E151A", "N160S", "K172R", "V194I", "A212T", "R229Q", "R236S", "D239N", "I245F", "D247G", "A268L", "G278V", "V301I", "I309V", "R324G", "I329F", "L330I"], "nef": ["I10K", "P14S", "R21E", "R22Q", "A23T", "T48A", "A50-", "T51-", "A56V", "Q107R", "Q125H", "V133T", "Y135F", "E149D", "M173T", "K198R", "Y202F"], "p1": ["I5L"], "p17": ["L8I", "R15K", "K26H", "G62E", "E93D", "T122K"], "p2": ["S10P", "T12N", "I13V"], "p24": ["P14S", "I15L", "V27I", "I91V", "M96L", "T148V"], "p6": ["P30S", "A39T", "Q52K"], "p7": ["R7K", "T12A", "K26R", "K41R"], "pro": ["T12K", "N37D", "R41K", "D60E", "Q61N", "P63S", "I64L", "A71T", "I72A", "V77I"], "rev": ["S5R", "D11E", "L12I", "R17K", "I21L", "S30N", "E47A", "I55F", "G57E", "W58R", "I59L", "Y63F", "P67S", "S86T", "S99G", "I102V"], "tat": ["F32L", "A58D", "H65N", "D67A"], "vif": ["T20A", "Y30H", "K33R", "K91R", "D99E", "Q136L", "I154V", "T155K", "S186N"], "vpr": ["S28R", "G41E", "Y45H", "I63T", "I70V"], "vpu": ["P3A", "T5V", "L7S", "V14I", "A16T", "I25L", "K38R", "I39V", "E58D"]}, "labels": {"aa": "INT: M50I, I60M, L68V, A91T, K156N, K211R; RT-p51: D123E, K126Q, I135V, T200A, R211S, M245V, K275R, V276I, Q367L, I375V, V417T; RT-p66: D123E, K126Q, I135V, T200A, R211S, M245V, K275R, V276I, Q367L, I375V, V417T, L491V, A554T; gp120: E19D, V37A, V40I, E59G, N64H, N109T, T112N, N113T, -117A, -119S, -120M, -121T, -123G, G124R, -142N, K143D, D144-, L151Y, V153I, V154E, P155S, D159S, N160T, I166T, S167K, A191T, D202N, K204T, K212T, E240G, T255V, H280P, R287K, A291T, T308S, K309Q, N312K, K315I, A318T, R322K, Q324R, N327S, -328K, T330-, V332I, N334K, S336H, S347H, T366S, W372R, T385K, T387I, M398I, E401G, M406I, K412E, R416S, S418L, N420K, N432G, N433G, T434R, E436A, T437S, T439N, E464K, V468I; gp41: A14T, I24M, I37M, A96T, T101A, D109S, E110Q, K122R, E151A, N160S, K172R, V194I, A212T, R229Q, R236S, D239N, I245F, D247G, A268L, G278V, V301I, I309V, R324G, I329F, L330I; nef: I10K, P14S, R21E, R22Q, A23T, T48A, A50-, T51-, A56V, Q107R, Q125H, V133T, Y135F, E149D, M173T, K198R, Y202F; p1: I5L; p17: L8I, R15K, K26H, G62E, E93D, T122K; p2: S10P, T12N, I13V; p24: P14S, I15L, V27I, I91V, M96L, T148V; p6: P30S, A39T, Q52K; p7: R7K, T12A, K26R, K41R; pro: T12K, N37D, R41K, D60E, Q61N, P63S, I64L, A71T, I72A, V77I; rev: S5R, D11E, L12I, R17K, I21L, S30N, E47A, I55F, G57E, W58R, I59L, Y63F, P67S, S86T, S99G, I102V; tat: F32L, A58D, H65N, D67A; vif: T20A, Y30H, K33R, K91R, D99E, Q136L, I154V, T155K, S186N; vpr: S28R, G41E, Y45H, I63T, I70V; vpu: P3A, T5V, L7S, V14I, A16T, I25L, K38R, I39V, E58D"}}}, {"name": "B_NODE_0000012", "node_attrs": {"div": 0.16991, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A571T", "A585G", "T641G", "C1061T", "G1404A", "G1419A", "C1828A", "C2326T", "G2828A", "A2925G", "A3280G", "G3473A", "G3477A", "A4076C", "G4150A", "T4498C", "G4642A", "A4683G", "T4701G", "G4708A", "A4721T", "A4774G", "A5159G", "T5239C", "A5335G", "C5406T", "C5513T", "C5539A", "C5686T", "C5688A", "A6174G", "G6198C", "A6303C", "C6632T", "A6713C", "A6775C", "-6968T", "-6973T", "-6975C", "C6991T", "-6998G", "-6999G", "-7001A", "-7002A", "-7004G", "-7005A", "-7009T", "A7015G", "A7155C", "A7269G", "G7375A", "T7626A", "G7627T", "G7633C", "C7931T", "G8007A", "C8220T", "-8373G", "-8374T", "T8595C", "G8738A"], "INT": ["I101L"], "RT-p51": ["K277R"], "RT-p66": ["K277R", "D460N", "R461K"], "gp120": ["K107R", "S115T", "K150T", "G307S", "-374T", "-382G", "-383N", "K472R"], "gp41": ["E110D", "N157S", "L210F", "G235E", "A306V"], "nef": ["-11V", "D54A", "M194V"], "p17": ["Y79F", "K91R", "D102E"], "p24": ["G225S", "V230I"], "p6": ["S50*"], "rev": ["S8R", "P28L"], "tat": ["S46F"], "vif": ["R19K", "K33G", "F39V", "R41K", "E45D"], "vpr": ["T19A", "Q77R"]}, "labels": {"aa": "INT: I101L; RT-p51: K277R; RT-p66: K277R, D460N, R461K; gp120: K107R, S115T, K150T, G307S, -374T, -382G, -383N, K472R; gp41: E110D, N157S, L210F, G235E, A306V; nef: -11V, D54A, M194V; p17: Y79F, K91R, D102E; p24: G225S, V230I; p6: S50*; rev: S8R, P28L; tat: S46F; vif: R19K, K33G, F39V, R41K, E45D; vpr: T19A, Q77R"}}, "children": [{"name": "DQ354118", "node_attrs": {"div": 0.19174, "accession": "DQ354118", "clade_membership": {"value": "B"}, "country": {"value": "TH"}, "date": {"value": 1996.0}, "Strain_name": {"value": "M145"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G363A", "A386G", "G424A", "G438A", "G519C", "G520A", "G534T", "C590T", "C603G", "A725C", "A812G", "G911T", "C1118T", "T1299C", "G1313A", "A1525G", "A1592G", "T1610C", "A1664G", "T1791G", "G1794A", "G1920A", "A2113T", "G2341A", "T2365C", "G2392A", "A2395G", "A2399C", "C2584T", "T2653C", "C2714G", "T2806C", "T2885C", "G2887A", "G2902A", "G2947A", "G3004A", "A3027G", "A3031G", "A3109G", "C3129A", "G3142A", "G3221A", "C3223T", "A3229G", "G3236A", "T3469A", "A3481G", "A3658T", "A3685G", "C3688T", "T3746C", "T3757C", "A3795G", "A3877G", "G4046A", "C4146A", "A4174G", "A4312G", "A4333G", "G4573A", "C4585T", "T4703C", "G4778A", "A4845G", "A4847G", "T4959G", "A5015G", "A5087G", "G5153C", "G5176A", "T5203C", "G5359A", "A5397C", "C5445T", "A5447C", "T5472A", "A5493G", "G5548T", "T5577C", "C5584T", "C5614G", "G5653A", "G5668A", "A5715G", "T5781G", "A5828C", "C5869A", "A5915G", "T5956A", "T5968C", "A6059G", "A6066T", "A6076C", "A6095G", "A6120G", "T6169G", "A6179G", "A6192G", "G6203A", "A6208T", "-6210G", "-6211T", "-6212A", "-6213T", "-6214A", "-6215A", "-6216T", "-6217G", "-6219A", "C6253T", "A6268C", "T6287C", "T6295C", "G6314A", "T6315C", "-6329G", "-6330A", "-6333A", "C6412T", "G6425A", "A6449C", "A6602T", "A6617G", "C6618T", "C6695T", "C6708T", "G6712A", "G6725A", "T6735A", "C6758T", "A6803G", "T6815C", "-6831G", "-6832G", "-6833A", "G6835C", "A6836-", "A6837-", "C6838-", "C6850A", "T6856G", "C6857A", "A6859T", "C6875T", "C6876T", "A6880G", "T6885C", "C6935A", "-6971C", "-6972A", "A6990G", "G6995-", "-7000G", "-7006T", "A7037G", "G7054A", "A7095C", "T7105C", "T7150A", "G7152A", "C7153A", "T7159C", "G7168A", "G7182C", "G7190A", "G7197A", "A7312G", "T7403C", "C7489T", "A7504G", "C7564T", "C7576T", "C7625T", "G7628T", "A7629C", "T7630A", "C7645T", "C7651T", "G7712C", "A7747C", "A7801G", "G7868A", "G7885A", "C7950A", "G7965A", "T7968C", "A7977G", "G8018C", "A8043T", "C8051A", "T8097C", "A8151G", "G8170A", "T8227C", "A8364T", "A8370C", "C8406A", "G8409A", "T8505G", "G8554A", "A8555G", "A8617G", "A8642T", "C8747T", "T8789A", "G8795A", "T8835C", "A8912C", "T9075C", "C9078T"], "INT": ["K7R", "A91T", "T124N"], "RT-p51": ["E6D", "K102Q", "Q207E", "K311R", "P345Q", "A376T", "V381I"], "RT-p66": ["E6D", "K102Q", "Q207E", "K311R", "P345Q", "A376T", "V381I"], "gp120": ["N5K", "T21A", "D34E", "K69E", "D71I", "E74D", "I81V", "K89R", "D105E", "N109A", "N113S", "-117T", "-119S", "-120I", "-121M", "-123G", "K138N", "Y145H", "V154T", "A191T", "K199Q", "T250S", "T255V", "P285L", "A291T", "H302Y", "T308A", "I317V", "E326G", "N334K", "Q335N", "P341L", "V344A", "Q361K", "-373H", "N378-", "T380S", "-381T", "I395V", "Q414P", "N433E", "G443A", "D446N", "R448K"], "gp41": ["L108Y", "D109S", "K122R", "E137Q", "E148D", "Q166K", "A189T", "P216H", "G221E", "I222T", "E225G", "D239H", "D247V", "L265S", "K283R"], "nef": ["I10L", "R15S", "A23T", "C55G", "R71K", "K92R", "V133I"], "p17": ["G10R", "R30K", "V35I", "G62Q", "A67S", "T84A", "Q90E", "E93D", "Q130H"], "p6": ["L38V", "A39T"], "p7": ["K20R"], "pro": ["R41K"], "rev": ["I21T", "G57A", "T68K", "A108T"], "tat": ["R7S", "N24T", "F32L", "A58S", "P70S", "P81T", "E86K", "S87P"], "vif": ["K63R", "I87V", "L125V", "M189I"], "vpr": ["E17Q", "R85Q"], "vpu": ["P3A", "A16T", "V21I", "H74P"]}, "labels": {"aa": "INT: K7R, A91T, T124N; RT-p51: E6D, K102Q, Q207E, K311R, P345Q, A376T, V381I; RT-p66: E6D, K102Q, Q207E, K311R, P345Q, A376T, V381I; gp120: N5K, T21A, D34E, K69E, D71I, E74D, I81V, K89R, D105E, N109A, N113S, -117T, -119S, -120I, -121M, -123G, K138N, Y145H, V154T, A191T, K199Q, T250S, T255V, P285L, A291T, H302Y, T308A, I317V, E326G, N334K, Q335N, P341L, V344A, Q361K, -373H, N378-, T380S, -381T, I395V, Q414P, N433E, G443A, D446N, R448K; gp41: L108Y, D109S, K122R, E137Q, E148D, Q166K, A189T, P216H, G221E, I222T, E225G, D239H, D247V, L265S, K283R; nef: I10L, R15S, A23T, C55G, R71K, K92R, V133I; p17: G10R, R30K, V35I, G62Q, A67S, T84A, Q90E, E93D, Q130H; p6: L38V, A39T; p7: K20R; pro: R41K; rev: I21T, G57A, T68K, A108T; tat: R7S, N24T, F32L, A58S, P70S, P81T, E86K, S87P; vif: K63R, I87V, L125V, M189I; vpr: E17Q, R85Q; vpu: P3A, A16T, V21I, H74P"}}}, {"name": "JN248347", "node_attrs": {"div": 0.20175, "accession": "JN248347", "clade_membership": {"value": "B"}, "country": {"value": "TH"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05TH429730"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G395A", "C456T", "A474G", "G508A", "A541C", "G562C", "A566G", "C586T", "C614A", "A615G", "G644A", "G648A", "A653G", "G678A", "T749C", "A944C", "A968T", "T978C", "T1064C", "T1100C", "C1169T", "T1296C", "A1377T", "A1382C", "C1406T", "A1450G", "C1456G", "A1458G", "C1459T", "G1474A", "G1476A", "G1477A", "C1478T", "A1496G", "T1505C", "G1508A", "A1529G", "C1556T", "G1643A", "T1682C", "G1687A", "A1743G", "C1782G", "C1850G", "A1852G", "T1888C", "A1903C", "T1999C", "T2024C", "C2044T", "G2068A", "G2074A", "C2105T", "T2245C", "C2281T", "A2311G", "A2397G", "T2410C", "A2414T", "A2419C", "G2422A", "G2428A", "A2498G", "T2536C", "A2548G", "T2608C", "A2637G", "C2684A", "G2686A", "A2752G", "A2755G", "A2983G", "G2984A", "C3013T", "T3022C", "C3023T", "T3049C", "C3100A", "T3121C", "T3172A", "G3173A", "A3247G", "C3271A", "T3376C", "A3400G", "G3401A", "A3535T", "G3631A", "C3692T", "A3727G", "A3737G", "C3751T", "G3755A", "A3768G", "T3865A", "A3961G", "A3986C", "C4129T", "T4207C", "A4273G", "T4316C", "A4384G", "A4407G", "T4441C", "G4464A", "C4569T", "T4678G", "T4679G", "T4718C", "A4745G", "A4773G", "G4835A", "A4838G", "A4857G", "A4861G", "A4950G", "C4955A", "G4982T", "A5046G", "G5123A", "A5128C", "G5131A", "A5136C", "G5167A", "A5173G", "T5206C", "T5224C", "T5263C", "T5293G", "C5303A", "C5356T", "T5357C", "G5359C", "A5537C", "A5556G", "A5558G", "G5599A", "C5621T", "T5626G", "T5627G", "A5688G", "A5722T", "T5731A", "G5737A", "C5826T", "C5851A", "C5859G", "G6020A", "A6065G", "T6085G", "A6132G", "C6145T", "G6167A", "G6172A", "C6180A", "C6183A", "A6186G", "G6195T", "T6196C", "T6199G", "A6201C", "T6202A", "C6204G", "C6205G", "A6206G", "A6209-", "G6218-", "G6220-", "G6221-", "G6222-", "A6223-", "G6232A", "T6250C", "A6260G", "A6265G", "A6266C", "C6293T", "T6295G", "A6300C", "C6305T", "G6311A", "T6331-", "A6332-", "T6334-", "A6371C", "C6446A", "T6460A", "G6466T", "C6477A", "C6482T", "T6511C", "G6525A", "T6541C", "C6545T", "G6588A", "A6615G", "A6664G", "C6708A", "T6724C", "C6734A", "A6748C", "A6767C", "G6776A", "A6798G", "C6807T", "A6811G", "G6821A", "G6848A", "A6859C", "G6884A", "T6916C", "A6957T", "T6958G", "-6971A", "-6972G", "-6983T", "-6984G", "-6985G", "A6989G", "-6996C", "-6997A", "-7000A", "-7006C", "T7021C", "A7056G", "A7088G", "A7089C", "C7094A", "C7127T", "C7156G", "T7159-", "G7160-", "A7161-", "G7162-", "A7163-", "C7164-", "T7192G", "A7300G", "A7306-", "G7307-", "T7308-", "A7322G", "C7336T", "A7412G", "A7420G", "G7440A", "G7552A", "T7561A", "A7620G", "T7624C", "G7640A", "G7658C", "G7668A", "C7678T", "A7689G", "C7701A", "C7702A", "A7756G", "G7765A", "T7783C", "A7799C", "G7846A", "A7847G", "T8016C", "T8020C", "C8048T", "A8076G", "G8079A", "C8080A", "A8092T", "A8107C", "T8155C", "T8213C", "T8215C", "C8336G", "T8348G", "G8372A", "T8387G", "A8403G", "G8404A", "T8440C", "T8504C", "T8505A", "G8506A", "G8537A", "T8568C", "A8570G", "A8573G", "A8584T", "C8640T", "T8646C", "A8660G", "C8666G", "C8699T", "A8739G", "A8750G", "C8751T", "G8753A", "A8780C", "G8818A", "G8861A", "G8870A", "A8885G", "G8970A", "G9006A", "G9007A", "A9018G", "T9029C"], "INT": ["K71Q", "F181L", "I203M", "K211R", "S230N", "A265V"], "RT-p51": ["P4S", "K101R", "T107S", "I135V", "Y181C", "Q197K", "E297K", "A360T", "G436R"], "RT-p66": ["P4S", "K101R", "T107S", "I135V", "Y181C", "Q197K", "E297K", "A360T", "G436R", "Q480H", "I548V", "A554T", "K558R"], "gp120": ["A2G", "V56I", "H77Q", "K93R", "D105N", "T110N", "N111S", "S114I", "N116T", "-117G", "S118G", "E122-", "M126I", "S136G", "I137M", "K138Q", "Y149S", "L151F", "V153I", "D159-", "N160-", "I173L", "L198I", "D202E", "K204N", "T208K", "P210S", "R224K", "R245K", "K254R", "P285Q", "Q294D", "I305L", "K315R", "A318V", "E323K", "V332I", "Q335H", "V344I", "H368L", "-373T", "-375S", "-376T", "-377W", "N379D", "-381A", "E401G", "K412A", "Q414K", "N433S", "E438-", "T439-", "D446E"], "gp41": ["V2-", "M7V", "I37V", "R46K", "K106R", "L108H", "D113N", "E119Q", "K129R", "T133K", "I182V", "V238A", "D247E", "H258R", "R259Q", "L263F", "F304L", "L345V"], "nef": ["C8S", "R21E", "V33A", "C55N", "Y81F", "Y102H", "D108E", "E149D", "G159E", "M173I"], "p17": ["N47D", "R58K", "Q69P", "R76T", "T84V", "I94V", "E105K", "A115T"], "p2": ["N9S", "A11G", "T12V"], "p24": ["E71D", "E79D", "T216S"], "p6": ["S3N", "T22A", "L35V"], "p7": ["R3K", "G4N"], "pro": ["Q18E", "E35D"], "rev": ["D11E", "K14R", "T15A", "W58R", "P67L", "L78I", "T82S", "K87Q"], "tat": ["M39I", "Q54P", "D61G"], "vif": ["I31R", "K63G", "K91E", "K92R", "N122D", "R132S", "I154V", "K181T", "G182D"], "vpr": ["D7N", "Q8H", "Q11P", "I63M", "L67M", "T84I", "R85P"], "vpu": ["T5I", "L7G", "I39L", "L42I", "D44N", "E58D", "L82M"]}, "labels": {"aa": "INT: K71Q, F181L, I203M, K211R, S230N, A265V; RT-p51: P4S, K101R, T107S, I135V, Y181C, Q197K, E297K, A360T, G436R; RT-p66: P4S, K101R, T107S, I135V, Y181C, Q197K, E297K, A360T, G436R, Q480H, I548V, A554T, K558R; gp120: A2G, V56I, H77Q, K93R, D105N, T110N, N111S, S114I, N116T, -117G, S118G, E122-, M126I, S136G, I137M, K138Q, Y149S, L151F, V153I, D159-, N160-, I173L, L198I, D202E, K204N, T208K, P210S, R224K, R245K, K254R, P285Q, Q294D, I305L, K315R, A318V, E323K, V332I, Q335H, V344I, H368L, -373T, -375S, -376T, -377W, N379D, -381A, E401G, K412A, Q414K, N433S, E438-, T439-, D446E; gp41: V2-, M7V, I37V, R46K, K106R, L108H, D113N, E119Q, K129R, T133K, I182V, V238A, D247E, H258R, R259Q, L263F, F304L, L345V; nef: C8S, R21E, V33A, C55N, Y81F, Y102H, D108E, E149D, G159E, M173I; p17: N47D, R58K, Q69P, R76T, T84V, I94V, E105K, A115T; p2: N9S, A11G, T12V; p24: E71D, E79D, T216S; p6: S3N, T22A, L35V; p7: R3K, G4N; pro: Q18E, E35D; rev: D11E, K14R, T15A, W58R, P67L, L78I, T82S, K87Q; tat: M39I, Q54P, D61G; vif: I31R, K63G, K91E, K92R, N122D, R132S, I154V, K181T, G182D; vpr: D7N, Q8H, Q11P, I63M, L67M, T84I, R85P; vpu: T5I, L7G, I39L, L42I, D44N, E58D, L82M"}}}]}]}]}, {"name": "B_NODE_0000013", "node_attrs": {"div": 0.14662, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G485T", "A491G", "A1736G", "T2080C", "G2230A", "C3266T", "A3961G", "G4060A", "G4778A", "C5086G", "G5179A", "G5330A", "A5685G", "T5956C", "C6007T", "G6167A", "A6174-", "-6211G", "T6337A", "G6403A", "T7047G", "A7246G", "G7846A", "G7868A", "T8035C", "C8209T", "G8276A", "C8277T", "A8364C", "C8451T", "C8971T", "C9012T"], "gp120": ["D139N", "D384-", "M398R"], "gp41": ["V24M", "L54M", "K122R", "A189T", "D239T", "A325I", "F326G"], "nef": ["S8R"], "rev": ["R53Q", "G57D", "Y63H"], "vif": ["G101D", "T167R"]}, "labels": {"aa": "gp120: D139N, D384-, M398R; gp41: V24M, L54M, K122R, A189T, D239T, A325I, F326G; nef: S8R; rev: R53Q, G57D, Y63H; vif: G101D, T167R"}}, "children": [{"name": "B_NODE_0000014", "node_attrs": {"div": 0.15166, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G265A", "T534G", "G607A", "A774C", "C890T", "A1089C", "A1804G", "A2221G", "C2386T", "A2727G", "G3162A", "G3490A", "C4140T", "G4186A", "C5214T", "C5221A", "G5275A", "G5359A", "A5375G", "C5444A", "G5747T", "-5800A", "-5804A", "-5805A", "-5806A", "-5807T", "-5809G", "-5810G", "A6009G", "-6180A", "-6203G", "-6205G", "A6206G", "G6207A", "-6210A", "-6215A", "-6216T", "-6217G", "-6219A", "G6345C", "G6346A", "A6489C", "A6605G", "A6709G", "A6797G", "-6831G", "-6832G", "A6929T", "-6957T", "-6972G", "-6978A", "-6979T", "-7009T", "A7032G", "A7269G", "A7398T", "G7628A", "G7676A", "G7773A", "A7847G", "A7988C", "G8010C", "C8213T", "G8531T", "T8770A", "G8858A", "G8882A", "T8887A", "C8934A", "G9132A"], "INT": ["T122I"], "RT-p51": ["K211R", "R356K"], "RT-p66": ["K211R", "R356K"], "gp120": ["N52S", "-118E", "-121M", "R164T", "K212T", "N251D", "T359S", "-372W", "K393R", "K472R"], "gp41": ["Q32L", "D125N", "I182V", "H209R", "G235S", "R236P"], "nef": ["F143Y", "M182K"], "p17": ["S67A"], "p24": ["I15L", "N120H"], "p6": ["K42R"], "rev": ["D11E", "E47A"], "tat": ["T23N"], "vpu": ["R47I", "V65M"]}, "labels": {"aa": "INT: T122I; RT-p51: K211R, R356K; RT-p66: K211R, R356K; gp120: N52S, -118E, -121M, R164T, K212T, N251D, T359S, -372W, K393R, K472R; gp41: Q32L, D125N, I182V, H209R, G235S, R236P; nef: F143Y, M182K; p17: S67A; p24: I15L, N120H; p6: K42R; rev: D11E, E47A; tat: T23N; vpu: R47I, V65M"}}, "children": [{"name": "AY751407", "node_attrs": {"div": 0.19701999999999997, "accession": "AY751407", "clade_membership": {"value": "B"}, "country": {"value": "RU"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04RU139089"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A215G", "G224A", "-305A", "T308C", "A368T", "G395A", "A424G", "C467T", "G491A", "A499G", "G518A", "G520A", "A562G", "A566C", "G579A", "C603A", "A604G", "A605C", "T641G", "A676G", "G678A", "A711G", "G740A", "T749C", "G818A", "C827T", "A869G", "T884C", "A968C", "G989A", "A1079G", "C1136T", "C1169T", "A1193G", "A1196G", "G1205A", "C1211T", "G1328A", "T1334C", "G1346A", "A1379C", "G1394A", "A1400G", "C1460A", "A1463G", "A1475G", "A1500C", "C1501T", "C1535T", "G1589A", "C1615T", "G1625A", "A1644C", "T1681C", "C1692T", "G1739A", "G1760A", "G1784A", "T1790C", "C1795T", "C1826A", "A1832T", "A1903C", "A1907G", "T1909A", "T1997C", "G1998A", "G2009A", "T2013A", "A2023G", "T2066C", "A2113G", "T2257C", "C2326T", "A2332G", "G2341A", "A2374G", "A2400G", "T2485C", "A2519T", "A2551G", "A2579T", "G2583C", "A2592G", "A2593G", "A2629G", "C2644T", "A2698G", "G2710A", "G2725A", "C2740A", "T2758C", "G2761A", "A2764G", "C2797A", "T2829A", "A2842G", "C2845T", "T2899C", "T2908C", "A2951G", "G2966C", "G2972A", "A2974C", "A2983T", "G2984A", "C3002T", "A3027G", "G3093A", "G3094A", "A3192G", "A3193G", "A3200G", "C3201T", "G3205A", "A3214C", "G3221A", "C3225T", "A3226G", "A3238C", "T3253C", "T3266C", "A3280G", "G3293A", "G3334A", "G3364A", "G3398A", "T3399C", "A3463G", "C3500T", "A3502T", "C3504A", "T3541C", "G3562A", "T3566G", "T3567C", "C3577T", "A3583T", "G3631A", "G3667A", "G3686A", "G3755T", "A3760G", "G3796A", "A3808T", "T3829C", "G3834A", "C3908T", "G3961A", "A3979G", "T4042C", "A4105T", "A4111G", "T4144C", "A4145G", "T4147C", "T4165C", "A4189G", "G4226A", "G4366A", "A4391T", "C4396T", "T4435C", "C4501T", "T4537C", "A4644G", "A4652C", "T4672A", "G4684A", "T4712C", "C4715T", "G4735A", "C4761T", "G4765A", "C4771G", "T4772A", "C4803A", "C4820T", "A4874T", "G4887A", "T4910C", "T4914C", "A4937G", "T5018C", "C5019T", "G5037A", "A5049C", "C5052T", "T5062A", "A5063T", "G5143A", "A5179C", "T5203C", "G5212A", "A5213C", "G5226C", "T5237C", "T5243C", "T5292C", "A5302G", "A5312G", "T5319A", "A5362G", "G5382T", "C5398T", "T5448A", "T5470C", "C5495G", "A5496C", "G5561A", "A5564C", "T5578C", "T5584C", "C5620A", "A5621G", "A5622C", "T5626G", "T5707G", "A5709G", "C5727T", "G5730A", "A5746G", "T5788C", "C5826T", "G5839A", "G5858A", "T5860C", "C5917T", "C5924T", "A5995T", "G6023A", "T6024G", "T6026C", "A6038T", "A6044G", "T6046C", "C6145T", "A6167G", "-6170G", "-6171C", "-6172T", "-6174A", "-6175G", "G6195A", "G6201C", "-6204T", "G6220A", "A6221C", "G6232A", "C6241T", "C6247T", "G6267C", "T6298C", "G6311C", "T6315C", "A6322T", "A6333C", "T6334A", "A6335-", "C6336-", "A6337-", "A6371C", "G6392A", "A6465C", "A6532G", "C6563T", "A6573G", "G6604A", "C6618A", "A6623T", "A6625G", "T6641G", "-6697G", "A6703-", "C6708T", "A6773G", "G6774C", "G6776A", "T6793G", "A6798C", "A6818C", "G6819A", "A6826C", "-6830A", "A6836-", "A6837-", "T6838-", "A6859C", "C6935A", "T6946C", "T6949G", "-6956C", "T6958G", "A6960C", "G6963A", "A6965G", "C6966A", "-6968A", "-6969C", "G6970T", "-6971T", "-6973G", "-6975A", "-6977G", "-6980A", "-6981C", "-6982T", "-6983A", "-6984C", "-6985A", "A6986G", "C6993A", "-6996G", "-6997A", "T7003-", "G7048A", "A7057G", "A7090T", "A7095T", "T7117C", "C7124T", "C7127A", "T7147G", "A7148G", "A7149G", "A7151G", "A7152G", "C7153G", "A7157G", "T7159G", "C7164A", "G7190A", "G7246A", "A7279G", "G7307A", "G7309A", "A7313C", "A7373C", "C7429T", "T7433C", "A7504T", "A7570G", "T7588C", "A7604G", "T7624A", "G7627A", "A7689G", "A7729G", "A7755C", "A7764C", "G7765A", "A7782G", "C7792T", "A7796T", "A7801T", "G7835A", "C7843G", "G7862A", "T7864C", "A7873G", "C7938T", "C7940A", "C7941G", "G7947A", "A7962G", "G7965A", "G8001C", "C8005A", "G8007C", "G8017A", "A8019C", "G8050A", "C8106T", "A8143G", "T8218C", "A8224C", "G8254A", "G8267A", "T8277C", "A8288G", "T8290C", "C8296T", "T8337A", "T8348G", "G8372-", "T8375-", "C8382A", "C8383G", "G8398A", "A8403C", "G8404A", "A8405C", "G8409A", "A8420G", "T8426C", "C8440T", "A8447G", "T8451C", "C8480T", "G8529A", "A8530G", "T8567G", "A8580G", "C8581A", "C8590G", "T8595G", "A8617G", "G8619A", "A8622G", "A8636T", "C8684T", "T8757C", "G8787A", "C8790T", "A8801G", "G8807A", "G8814A", "A8815G", "T8864G", "A8886G", "G8888A", "A8893G", "A8909G", "G8924A", "T8971A", "T9029C", "T9074C"], "INT": ["E11D", "R20K", "T124A", "V151I", "T206S"], "RT-p51": ["K102R", "I142F", "S162C", "S163T", "K166R", "I178M", "M245E", "T286A", "E291Q", "V293I", "E297K", "K311R", "G333E", "K366R", "T369V", "Q373H", "A376T", "T377M", "A400T", "V435T"], "RT-p66": ["K102R", "I142F", "S162C", "S163T", "K166R", "I178M", "M245E", "T286A", "E291Q", "V293I", "E297K", "K311R", "G333E", "K366R", "T369V", "Q373H", "A376T", "T377M", "A400T", "V435T", "L469F", "T470N", "L491A", "V531I", "A554S"], "gp120": ["A2T", "V57R", "T62S", "N64D", "-106A", "-107K", "S114N", "-116T", "-117V", "-119K", "-123Q", "M126I", "K138T", "V153L", "V154A", "N160T", "T161-", "I173L", "V180I", "K204T", "E240G", "T255N", "I257L", "S263A", "I281M", "P285L", "R307A", "K315A", "R322Q", "Q324H", "-326R", "Q335H", "Q361K", "S365R", "-368L", "-370D", "-373N", "-374D", "-375T", "-376T", "-377D", "T380G", "R412S", "Q414L", "L425I", "N432G", "N433G", "N435-", "T437S", "T439N", "D446N"], "gp41": ["V2I", "I4A", "M24L", "M54L", "T101A", "D109N", "D129G", "E151A", "K154T", "N160S", "T165S", "V178I", "V187I", "A212V", "P213R", "G215E", "E220G", "G221E", "R233T", "S235T", "T239A", "A268V", "V322I", "I325T", "G326C", "I329V", "L345Q"], "nef": ["P14S", "R19K", "R21H", "A23T", "A33V", "E63S", "T80D", "A83G", "L85V", "K92R", "E93K", "K94E", "E98D", "V133I", "F139L", "E149K", "P150S", "E158R", "D174E", "K182E", "K184R", "M194V", "L198M"], "p1": ["I5L"], "p17": ["E55G", "G62E", "K76R", "V82I", "Q90S", "D102E", "K114R", "A115T", "S126G"], "p2": ["I13M"], "p24": ["E79D"], "p6": ["L1P", "P5S", "A39V"], "p7": ["T12L", "T50I"], "pro": ["L10I", "T12S", "E35D", "N37E", "C67H", "A71T", "I72K"], "rev": ["V16I", "P31Q", "Q51H", "Q53N", "D57S", "A68T", "S99G"], "tat": ["E2D", "N24K", "F32L", "T39I", "T40S", "S62N", "Q63P", "S68P", "S70P", "P77S", "R78G", "D80N", "K85E", "E86K"], "vif": ["T20A", "K22N", "M29K", "R50K", "G60E", "A62G", "H73N", "D101N", "Y110H", "T155P", "P156S", "I159N", "S186N"], "vpr": ["E25D", "I37L", "G41A", "Y45H", "Y47H", "I63T", "I70V", "F72Y", "R85Q", "Q86R", "A93S"], "vpu": ["Q5S", "L7V", "L34V", "I47V", "D78N"]}, "labels": {"aa": "INT: E11D, R20K, T124A, V151I, T206S; RT-p51: K102R, I142F, S162C, S163T, K166R, I178M, M245E, T286A, E291Q, V293I, E297K, K311R, G333E, K366R, T369V, Q373H, A376T, T377M, A400T, V435T; RT-p66: K102R, I142F, S162C, S163T, K166R, I178M, M245E, T286A, E291Q, V293I, E297K, K311R, G333E, K366R, T369V, Q373H, A376T, T377M, A400T, V435T, L469F, T470N, L491A, V531I, A554S; gp120: A2T, V57R, T62S, N64D, -106A, -107K, S114N, -116T, -117V, -119K, -123Q, M126I, K138T, V153L, V154A, N160T, T161-, I173L, V180I, K204T, E240G, T255N, I257L, S263A, I281M, P285L, R307A, K315A, R322Q, Q324H, -326R, Q335H, Q361K, S365R, -368L, -370D, -373N, -374D, -375T, -376T, -377D, T380G, R412S, Q414L, L425I, N432G, N433G, N435-, T437S, T439N, D446N; gp41: V2I, I4A, M24L, M54L, T101A, D109N, D129G, E151A, K154T, N160S, T165S, V178I, V187I, A212V, P213R, G215E, E220G, G221E, R233T, S235T, T239A, A268V, V322I, I325T, G326C, I329V, L345Q; nef: P14S, R19K, R21H, A23T, A33V, E63S, T80D, A83G, L85V, K92R, E93K, K94E, E98D, V133I, F139L, E149K, P150S, E158R, D174E, K182E, K184R, M194V, L198M; p1: I5L; p17: E55G, G62E, K76R, V82I, Q90S, D102E, K114R, A115T, S126G; p2: I13M; p24: E79D; p6: L1P, P5S, A39V; p7: T12L, T50I; pro: L10I, T12S, E35D, N37E, C67H, A71T, I72K; rev: V16I, P31Q, Q51H, Q53N, D57S, A68T, S99G; tat: E2D, N24K, F32L, T39I, T40S, S62N, Q63P, S68P, S70P, P77S, R78G, D80N, K85E, E86K; vif: T20A, K22N, M29K, R50K, G60E, A62G, H73N, D101N, Y110H, T155P, P156S, I159N, S186N; vpr: E25D, I37L, G41A, Y45H, Y47H, I63T, I70V, F72Y, R85Q, Q86R, A93S; vpu: Q5S, L7V, L34V, I47V, D78N"}}}, {"name": "AY173954", "node_attrs": {"div": 0.17529, "accession": "AY173954", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 1990.0}, "Strain_name": {"value": "US3"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T201A", "A220G", "T357C", "G369A", "G379A", "G471C", "A500G", "C516T", "C540A", "A554G", "A571T", "G608T", "A619G", "A689T", "C698T", "A706G", "T992G", "G1019A", "T1055C", "C1060A", "G1078C", "G1313A", "A1361C", "T1385C", "C1403T", "C1406T", "T1452C", "G1455T", "G1495A", "A1498G", "C1747A", "T1754C", "A1756C", "G1794A", "T1796C", "C1831T", "G1906A", "T1954C", "C1986T", "T1999C", "C2075A", "A2215G", "A2419G", "T2476C", "G2548A", "A2676C", "A2713G", "T2788G", "A2794G", "G2828A", "T2885C", "C2909G", "A2925G", "A2985C", "G3442A", "T3497C", "T3505G", "G3520A", "A3671G", "C3751T", "G3814A", "A3838T", "T3850C", "G3866A", "A3910G", "A3989G", "A4096G", "C4129T", "A4130G", "C4146A", "G4150A", "A4174G", "A4432G", "C4569T", "T4769A", "A4774G", "A4782G", "T4805A", "T4919C", "A4968T", "G4982C", "G4995A", "T5047C", "A5049G", "G5075A", "T5170C", "G5187A", "T5239C", "T5293G", "T5313C", "A5335G", "A5355-", "C5356-", "T5357-", "A5385C", "A5410C", "G5482A", "T5483A", "T5484G", "T5492C", "G5548A", "C5549A", "C5567T", "C5602T", "T5617G", "G5647A", "C5654G", "A5677G", "C5686T", "G5717A", "A5721G", "T5731A", "A5751G", "A5790G", "A5796G", "G5839C", "C5867A", "A5869T", "T5871C", "-6170T", "-6171T", "-6172G", "A6173-", "A6179G", "A6182G", "A6185T", "T6187C", "T6196C", "-6204G", "G6211C", "A6222G", "A6226G", "A6251G", "G6311A", "G6354A", "G6379A", "G6425A", "G6525A", "C6545T", "A6576G", "G6577T", "A6693C", "G6774A", "A6789G", "A6801T", "C6807T", "A6818G", "-6830G", "A6836G", "T6838A", "A6840C", "T6849C", "G6871A", "A6937G", "-6956A", "-6968T", "-6969G", "-6971A", "-6973T", "-6975G", "-6977A", "C6991T", "-6996A", "-6997T", "-6998A", "-6999A", "-7000C", "-7001A", "-7002A", "-7004G", "-7005G", "-7006A", "C7156T", "T7159C", "G7160A", "A7161C", "A7225G", "A7238C", "A7396G", "A7420G", "G7453A", "C7463A", "G7492A", "G7513A", "T7579C", "G7589A", "T7630A", "G7631A", "A7632C", "A7666C", "G7688A", "A7689C", "A7706C", "G7720A", "T7751C", "T7774C", "A7799C", "C7843T", "A7962C", "G7989A", "A8008T", "G8018C", "C8047T", "C8223T", "T8279G", "G8304C", "G8330C", "C8331T", "G8357T", "-8370A", "-8371T", "-8373A", "-8374G", "T8387G", "G8388A", "G8393A", "A8399G", "G8654A", "A8655C", "C8688A", "A8726G", "A8739G", "C8791A", "T8829A", "C8838A", "A8844G", "A8851T", "G8922A", "T8935A", "T8974-", "A8977G", "T9074G", "T9075C", "G9095T"], "INT": ["V31I", "I72V", "S119G", "T124N", "A265V"], "RT-p51": ["E194A", "P272A", "K277R", "E297A"], "RT-p66": ["E194A", "P272A", "K277R", "E297A", "S468P", "I526V"], "gp120": ["Q5N", "L6S", "D105N", "-106L", "N109D", "T110A", "N111Y", "-116S", "-117G", "-119N", "-123R", "I133V", "K138R", "V153I", "S167N", "A191T", "R224K", "E241G", "H280P", "R307K", "T308A", "N312S", "K315E", "Q316L", "A318V", "R322G", "-326G", "-328E", "K329T", "T330I", "I331A", "V332I", "-368I", "-370S", "-373S", "-374S", "-375N", "-381D", "-382N", "-383N", "-384G", "E436T", "T437N", "K462Q"], "gp41": ["A96T", "D109K", "E110T", "E121D", "D129T", "I135L", "N166Q", "E220A", "R229Q", "T239H", "T307I", "R334T", "A343L"], "nef": ["W5C", "-10M", "-11S", "V16I", "E62Q", "K105Q", "H116N", "P150Q", "C163S", "H166N", "M168V", "Q170L", "L198K"], "p17": ["E12K", "R15K", "R30K", "V46L", "Q69K", "Y79F", "K91N", "K95R", "N124S"], "p2": ["S10P", "A11S"], "p24": ["H87Q", "M96I", "T110N", "G116A"], "p6": ["T23N", "Q26P", "A39T", "S51L"], "p7": ["R10K", "K11R"], "pro": ["M36I", "P63L", "L93I"], "rev": ["L12I", "L18F", "T54S", "D57A", "P67S"], "tat": ["K12Q", "V36K", "A58N", "T64I", "K85Q"], "vif": ["K33R", "D61E", "K63R", "I66V", "H73Q", "I128L", "R132S", "A137T", "T151A", "I154T", "T155A"], "vpr": ["S28N", "I63M", "I70T", "Q77R", "T84Q", "R85-", "S94R"], "vpu": ["L4V", "V14I", "A16G", "T24A", "L27F", "R37K", "L42I", "D78H"]}, "labels": {"aa": "INT: V31I, I72V, S119G, T124N, A265V; RT-p51: E194A, P272A, K277R, E297A; RT-p66: E194A, P272A, K277R, E297A, S468P, I526V; gp120: Q5N, L6S, D105N, -106L, N109D, T110A, N111Y, -116S, -117G, -119N, -123R, I133V, K138R, V153I, S167N, A191T, R224K, E241G, H280P, R307K, T308A, N312S, K315E, Q316L, A318V, R322G, -326G, -328E, K329T, T330I, I331A, V332I, -368I, -370S, -373S, -374S, -375N, -381D, -382N, -383N, -384G, E436T, T437N, K462Q; gp41: A96T, D109K, E110T, E121D, D129T, I135L, N166Q, E220A, R229Q, T239H, T307I, R334T, A343L; nef: W5C, -10M, -11S, V16I, E62Q, K105Q, H116N, P150Q, C163S, H166N, M168V, Q170L, L198K; p17: E12K, R15K, R30K, V46L, Q69K, Y79F, K91N, K95R, N124S; p2: S10P, A11S; p24: H87Q, M96I, T110N, G116A; p6: T23N, Q26P, A39T, S51L; p7: R10K, K11R; pro: M36I, P63L, L93I; rev: L12I, L18F, T54S, D57A, P67S; tat: K12Q, V36K, A58N, T64I, K85Q; vif: K33R, D61E, K63R, I66V, H73Q, I128L, R132S, A137T, T151A, I154T, T155A; vpr: S28N, I63M, I70T, Q77R, T84Q, R85-, S94R; vpu: L4V, V14I, A16G, T24A, L27F, R37K, L42I, D78H"}}}]}, {"name": "B_NODE_0000015", "node_attrs": {"div": 0.15007, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A215G", "C227A", "A585G", "C586T", "G599A", "G1346A", "C3252T", "G3562A", "T3976C", "G4376A", "G4696A", "T4976A", "G5037A", "A5213C", "G5548C", "A5689T", "-6205T", "A6222-", "A6223-", "G6232A", "A6266G", "G6776A", "A6810T", "G6894C", "A6962G", "A6989-", "A6990-", "C6991-", "-7005A", "G7256A", "G7311C", "A7313C", "T7630G", "A7666G", "T7921C", "G8018A", "A8019C", "G8255A"], "INT": ["V201I"], "gp120": ["N109S", "E122-", "M126I", "V242I", "K319I", "S347T", "-374T", "N379-", "T380-", "T385-", "V468I"], "gp41": ["G3T", "I4L", "T101A", "V318I"], "p17": ["T84V", "K91R"], "vif": ["G37K", "F39V"], "vpr": ["I37P"]}, "labels": {"aa": "INT: V201I; gp120: N109S, E122-, M126I, V242I, K319I, S347T, -374T, N379-, T380-, T385-, V468I; gp41: G3T, I4L, T101A, V318I; p17: T84V, K91R; vif: G37K, F39V; vpr: I37P"}}, "children": [{"name": "B_NODE_0000016", "node_attrs": {"div": 0.15662, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T473C", "T476C", "G579A", "T749A", "C771G", "T1263A", "G1687A", "A1903C", "C2075A", "C2797T", "A2818G", "G3046A", "G3169A", "A3280G", "T3436C", "C3649T", "G3814A", "G4495A", "G4642A", "A4683G", "G4695A", "T4701G", "C4726A", "C5050A", "A5432G", "C5611A", "A5612T", "T5626G", "A5787G", "G5845A", "-6170G", "-6171T", "-6172G", "C6190T", "G6198C", "-6203A", "A6208T", "-6212A", "-6213C", "G6261A", "T6287-", "C6336A", "G6743A", "A6767C", "G6771C", "A6926G", "-6956A", "-6971A", "-6973T", "-6977A", "-6980G", "-6981G", "-6982T", "-6984C", "-7006C", "T7150C", "A7155C", "C7156T", "C7170T", "G7310A", "T7579C", "G7633C", "A7726G", "G8010C", "C8033A", "A8043T", "G8061T", "A8152G", "C8221T", "A8288T", "C8293T", "G8342A", "C8364A", "-8371T", "-8373G", "G8534A", "T8740C", "C8831A", "C8928A"], "RT-p66": ["L517I"], "gp120": ["S115T", "K138G", "T161K", "D297N", "I305L", "N358D", "-377S", "N434T"], "gp41": ["E110D", "R236P", "L244I", "D247V", "C253F", "F304L", "I329F"], "nef": ["V133T", "E149D"], "p17": ["V82I"], "p24": ["P14A", "S178T"], "p6": ["S3N"], "pro": ["E35D", "L93I"], "rev": ["I102V"], "tat": ["K19R"], "vif": ["K33G", "T47N", "T155K"], "vpr": ["R85P"], "vpu": ["Q2I", "D80N"]}, "labels": {"aa": "RT-p66: L517I; gp120: S115T, K138G, T161K, D297N, I305L, N358D, -377S, N434T; gp41: E110D, R236P, L244I, D247V, C253F, F304L, I329F; nef: V133T, E149D; p17: V82I; p24: P14A, S178T; p6: S3N; pro: E35D, L93I; rev: I102V; tat: K19R; vif: K33G, T47N, T155K; vpr: R85P; vpu: Q2I, D80N"}}, "children": [{"name": "KT427687", "node_attrs": {"div": 0.20146, "accession": "KT427687", "clade_membership": {"value": "B"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_MG012"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G224A", "-305C", "T357A", "G365C", "G379A", "A424G", "T479C", "A488G", "A533G", "C587T", "A647T", "A776C", "G818A", "G989A", "A1028G", "A1079G", "C1169T", "C1175T", "G1271A", "A1307G", "T1358C", "T1385C", "A1400G", "G1438A", "G1443A", "A1445G", "A1449G", "A1450G", "C1456T", "A1458-", "C1459-", "C1460-", "A1463G", "A1475G", "G1486A", "A1498G", "A1500G", "A1545C", "A1586G", "C1598T", "A1606G", "C1656T", "A1657C", "A1670G", "T1676C", "A1715G", "A1742G", "A1746G", "A1765G", "G1766-", "C1767-", "C1768-", "G1769-", "A1770-", "T1771-", "C1775T", "A1776C", "C1782A", "T1783A", "A1804G", "C1828T", "A1908G", "A1918G", "T2005G", "A2113G", "A2154G", "A2230G", "T2245A", "C2326T", "G2341A", "T2365C", "C2386T", "T2408G", "T2449A", "T2632C", "T2672C", "A2699G", "A2707T", "A2716G", "A2734G", "A2809G", "G2830A", "A2839C", "G2887A", "T2905C", "A2937G", "C2941T", "G2972A", "C2978T", "G3016A", "T3045C", "C3055T", "T3059G", "C3060A", "C3067T", "G3094A", "C3095G", "C3100T", "A3124G", "T3165C", "A3190G", "G3211A", "A3238C", "A3251G", "A3286G", "A3292G", "C3303T", "G3307T", "G3427A", "G3442T", "T3445A", "G3494A", "C3496T", "C3504T", "T3505G", "G3523A", "C3542T", "A3547G", "G3631A", "T3644G", "A3676G", "G3685A", "A3724G", "G3755A", "C3756A", "G3770A", "A3808C", "G3846A", "A3877G", "C3892A", "A3919G", "A3979G", "T4042C", "G4046A", "A4094C", "A4112G", "C4129A", "A4130C", "G4131C", "T4144C", "A4174G", "G4294A", "A4391T", "G4464A", "A4474C", "T4498C", "T4534C", "G4573A", "G4694A", "A4697T", "T4703A", "G4708A", "G4723A", "G4770A", "C4771G", "A4782G", "C4820A", "G4856A", "G4862A", "A4900G", "T4907C", "T4938A", "A4946T", "A4949G", "C4955A", "A4956T", "T4967G", "T4985C", "A4988G", "T5025C", "A5051G", "G5075A", "G5086A", "A5173G", "T5188A", "C5221G", "G5275A", "A5345G", "G5359C", "A5375G", "A5395G", "G5396A", "C5445T", "T5484G", "T5492C", "C5542A", "C5548G", "G5557C", "C5567G", "T5578C", "C5602T", "A5613T", "C5614A", "A5619G", "C5686T", "C5688T", "T5689A", "C5763T", "T5778C", "T5788C", "G5794A", "-5800G", "-5804A", "-5805T", "-5806A", "-5807T", "-5809G", "-5810G", "C5826T", "T5860-", "G5861-", "C5862-", "A5865G", "C5867A", "A5869T", "T5871G", "A5957C", "T5974G", "G6023C", "G6079A", "T6091C", "C6145T", "-6174C", "-6175C", "A6177G", "T6178C", "-6180G", "A6192C", "A6194G", "G6195C", "T6196A", "T6199C", "T6202C", "-6204G", "G6207A", "-6210A", "G6211T", "-6214T", "-6215A", "-6216C", "-6217T", "-6219C", "-6222G", "-6223T", "A6260C", "C6262T", "T6264C", "A6282C", "A6285C", "A6286-", "A6288-", "A6304C", "T6307A", "T6315A", "A6337G", "T6347C", "C6375G", "A6456G", "T6457A", "A6462C", "G6463A", "A6490G", "T6511C", "T6551C", "C6559T", "A6571G", "G6572-", "A6573-", "A6574-", "A6580G", "T6641A", "A6653G", "C6660T", "C6667T", "C6670T", "C6692A", "G6725A", "C6729A", "G6732C", "A6733C", "A6751G", "T6760C", "C6766T", "G6774A", "A6785G", "T6787A", "A6788G", "T6794C", "G6802A", "A6820C", "A6833C", "T6835G", "C6843G", "A6844C", "G6848A", "T6849C", "T6860A", "C6861G", "A6932T", "C6935A", "C6938T", "A6944C", "G6948A", "T6949A", "-6957A", "A6959T", "A6960C", "G6962A", "-6968A", "-6969A", "-6972C", "-6975A", "-6978A", "-6979T", "-6983A", "-6985T", "T6988C", "-6989G", "-6990A", "-6991A", "T6994A", "-6996A", "-6997G", "-6998G", "-6999C", "-7000A", "-7001A", "-7002G", "-7004A", "A7005G", "C7008A", "-7009T", "A7015C", "A7036G", "C7087T", "A7088G", "G7089C", "A7095C", "A7102C", "T7106G", "C7107T", "G7123A", "C7127T", "C7153T", "A7157G", "G7162T", "C7165T", "C7201T", "A7239G", "A7240G", "T7250C", "A7297G", "C7605A", "A7629G", "A7646T", "G7676A", "A7677G", "A7687G", "A7689C", "T7691C", "T7692A", "A7700T", "A7711G", "G7735A", "A7741G", "C7742A", "G7765A", "G7773A", "A7782C", "T7789C", "A7796T", "A7801C", "G7929A", "T7932A", "C7938T", "C7940G", "A8006G", "A8076G", "G8079A", "C8080A", "G8087A", "T8097C", "G8098A", "T8103C", "G8242A", "T8268G", "T8281G", "T8290C", "T8302C", "G8304C", "G8349A", "T8366C", "-8370G", "-8374T", "T8375C", "A8396T", "T8411A", "T8451C", "T8477C", "G8487T", "G8531A", "T8543C", "T8558C", "A8573G", "G8589T", "C8609T", "A8621T", "A8643G", "A8647G", "C8648G", "A8656G", "G8682A", "C8688A", "A8696G", "C8741T", "A8746T", "T8747C", "T8785A", "G8789C", "G8805A", "G8817A", "A8823G", "T8829A", "A8844G", "T8845A", "G8846A", "A8851T", "T8855C", "C8867T", "G8875A", "T8887G", "G8888A", "A8893G", "C8916A", "T8918G", "C8921T", "G8922A", "T8974-", "T9029C", "G9052A"], "INT": ["E11D", "S24N", "S39R", "A91T", "I113V", "S119P", "T206S", "S230N"], "RT-p51": ["K20R", "S105A", "I202V", "E204D", "M245V", "E248D", "K281R", "V293I", "V317A", "S322E", "Q334E", "M357T", "T386V", "T403I", "E404D"], "RT-p66": ["K20R", "S105A", "I202V", "E204D", "M245V", "E248D", "K281R", "V293I", "V317A", "S322E", "Q334E", "M357T", "T386V", "T403I", "E404D", "E449D", "V467I", "T470M", "H483Y", "I517V", "A554N", "V559I"], "gp120": ["A3G", "E4N", "Q5W", "L6-", "T35P", "V57L", "-107T", "N108S", "N113T", "S136H", "I137T", "K143T", "E144A", "Y145-", "K150N", "V154E", "T174R", "N201R", "K203T", "E241-", "I242V", "S263T", "N267D", "T269I", "H280N", "A291T", "T292K", "G293A", "D294I", "S306T", "R307K", "N311E", "N312D", "R322S", "-326Q", "T330S", "V332T", "T360S", "Q361K", "N364H", "S365K", "-368N", "N369S", "-370S", "-372K", "-373T", "-375E", "-376A", "N378S", "-379N", "-380G", "-381N", "R412A", "Q414P", "R416S", "S418V", "N435D", "E436D", "T439I", "K462R"], "gp41": ["M54L", "A101N", "K106N", "D109G", "M115L", "D125S", "D129A", "L130Q", "T133S", "Q147K", "N160T", "T165S", "L210H", "A212V", "P213A", "H258R", "R259Q", "D262N", "L265S", "V267A", "V322G", "G326W", "R334T"], "nef": ["G3S", "R8S", "-10V", "-11V", "E18D", "A49S", "A83S", "E93D", "I101V", "Y102W", "K105R", "V114I", "H116N", "Y135F", "V148D", "E155K", "G159R", "N161D", "C163R", "M168E", "Q170L", "R178K", "M182R", "K184R", "H192K"], "p1": ["H9S"], "p17": ["L8I", "R15K"], "p2": ["S5N", "V7M", "N9G", "A11V", "T12M", "I13-"], "p6": ["T23A", "E29G", "P30-", "I31-", "K33Q", "L35K", "K42R", "S50L"], "p7": ["R7K", "K11R", "T12A", "N27H", "K47R"], "pro": ["N37S", "H69Q"], "rev": ["D9E", "D11E", "K14N", "L18V", "P31R", "Q53R", "T62N", "L78I", "R80K", "D84N"], "tat": ["R7E", "D61H", "T64S", "S68P", "A74T", "S75T", "P77S"], "vif": ["R19K", "K37N", "R41K", "S46N", "A62S", "I66V", "D78E", "Q105R", "S118T", "I124L", "S130R", "Y147H", "R167K"], "vpr": ["S28R"], "vpu": ["P3T", "L7V", "L27F", "A63T", "E66D"]}, "labels": {"aa": "INT: E11D, S24N, S39R, A91T, I113V, S119P, T206S, S230N; RT-p51: K20R, S105A, I202V, E204D, M245V, E248D, K281R, V293I, V317A, S322E, Q334E, M357T, T386V, T403I, E404D; RT-p66: K20R, S105A, I202V, E204D, M245V, E248D, K281R, V293I, V317A, S322E, Q334E, M357T, T386V, T403I, E404D, E449D, V467I, T470M, H483Y, I517V, A554N, V559I; gp120: A3G, E4N, Q5W, L6-, T35P, V57L, -107T, N108S, N113T, S136H, I137T, K143T, E144A, Y145-, K150N, V154E, T174R, N201R, K203T, E241-, I242V, S263T, N267D, T269I, H280N, A291T, T292K, G293A, D294I, S306T, R307K, N311E, N312D, R322S, -326Q, T330S, V332T, T360S, Q361K, N364H, S365K, -368N, N369S, -370S, -372K, -373T, -375E, -376A, N378S, -379N, -380G, -381N, R412A, Q414P, R416S, S418V, N435D, E436D, T439I, K462R; gp41: M54L, A101N, K106N, D109G, M115L, D125S, D129A, L130Q, T133S, Q147K, N160T, T165S, L210H, A212V, P213A, H258R, R259Q, D262N, L265S, V267A, V322G, G326W, R334T; nef: G3S, R8S, -10V, -11V, E18D, A49S, A83S, E93D, I101V, Y102W, K105R, V114I, H116N, Y135F, V148D, E155K, G159R, N161D, C163R, M168E, Q170L, R178K, M182R, K184R, H192K; p1: H9S; p17: L8I, R15K; p2: S5N, V7M, N9G, A11V, T12M, I13-; p6: T23A, E29G, P30-, I31-, K33Q, L35K, K42R, S50L; p7: R7K, K11R, T12A, N27H, K47R; pro: N37S, H69Q; rev: D9E, D11E, K14N, L18V, P31R, Q53R, T62N, L78I, R80K, D84N; tat: R7E, D61H, T64S, S68P, A74T, S75T, P77S; vif: R19K, K37N, R41K, S46N, A62S, I66V, D78E, Q105R, S118T, I124L, S130R, Y147H, R167K; vpr: S28R; vpu: P3T, L7V, L27F, A63T, E66D"}}}, {"name": "KT124779", "node_attrs": {"div": 0.20632, "accession": "KT124779", "clade_membership": {"value": "B"}, "country": {"value": "DE"}, "date": {"value": 2010.0}, "Strain_name": {"value": "556743"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A371T", "A380G", "A386G", "T396C", "A423C", "T426C", "C467T", "T485G", "G491A", "A494T", "A499C", "T506C", "G508A", "C525T", "A530C", "G542A", "A566T", "A578C", "G607A", "G612A", "A618G", "A620C", "T641G", "A652C", "G656A", "C662T", "A663G", "A697G", "G712A", "C713T", "G740A", "T858C", "C872T", "A881G", "A959G", "A986G", "T1052C", "A1151G", "C1211T", "C1220T", "C1253T", "C1316T", "T1322C", "A1346G", "A1382T", "C1406A", "T1421G", "T1422C", "A1442G", "A1458G", "G1476A", "T1482A", "T1502A", "T1511C", "G1532A", "C1535T", "A1543G", "G1562A", "A1691G", "A1719-", "G1720-", "C1721-", "T1722-", "T1723-", "C1724-", "A1725-", "G1726-", "G1727-", "T1728-", "T1729-", "T1730-", "G1731-", "G1732-", "G1733-", "G1734-", "A1735-", "G1736-", "G1737-", "A1738-", "G1739-", "C1741T", "C1744T", "A1745G", "T1752C", "G1763A", "A1781C", "G1840A", "C1913A", "C1987T", "A1988G", "C1996T", "T1999C", "A2002G", "A2023G", "C2044T", "C2080T", "C2083T", "T2101C", "A2113T", "G2173A", "A2216T", "A2242G", "C2263T", "T2269C", "G2422A", "T2440C", "C2467T", "G2470A", "T2485C", "T2494C", "A2519G", "T2536C", "T2542C", "A2579T", "C2596T", "T2597C", "A2614G", "T2638C", "C2708T", "C2714A", "T2724G", "G2728A", "A2738G", "C2739A", "A2755G", "G2828A", "T2829A", "G2869A", "C2909G", "A2920G", "A3001G", "A3031G", "A3071G", "A3096T", "A3130T", "G3162A", "A3196G", "C3223T", "G3236A", "T3252C", "A3264G", "T3266C", "C3346T", "G3364A", "G3379A", "A3400G", "T3445C", "A3447G", "G3477A", "A3487G", "G3490A", "T3493G", "T3497A", "T3550C", "T3644A", "A3655G", "G3694A", "T3778C", "A3781G", "A3805C", "G3925A", "C3940T", "A3949G", "G3961A", "C3976T", "A4012C", "A4060G", "T4075C", "A4076C", "G4150A", "G4177A", "T4258C", "G4366A", "A4432G", "C4475T", "A4567G", "A4570T", "A4643C", "G4659A", "G4673A", "T4674C", "C4728A", "C4820T", "G4829A", "A4860G", "G4861A", "A4888G", "C4890T", "T4912A", "G4913A", "A4937G", "T4943C", "A4950C", "T4952A", "T4959G", "G4966A", "A4968T", "A4976C", "C5006A", "C5027T", "C5034T", "A5042C", "A5059G", "A5096G", "G5143A", "C5145G", "T5147G", "C5162A", "T5170G", "G5187A", "A5215C", "T5237C", "A5330G", "A5355-", "C5356-", "T5357-", "G5359A", "A5362C", "G5363A", "A5446C", "A5447C", "T5487C", "C5495A", "A5496G", "A5556G", "C5563A", "T5576C", "G5599A", "A5613C", "A5622G", "T5627C", "G5653A", "C5678G", "G5685A", "A5721G", "G5729A", "A5746G", "G5747C", "G5775A", "C5797T", "T5799-", "T5801-", "G5802-", "G5803-", "G5808-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5858A", "C5878A", "G5882A", "C5916A", "C5956T", "G5963A", "T6007C", "A6030G", "T6049C", "G6088A", "T6101C", "A6113G", "C6153A", "T6154G", "-6174G", "-6175G", "A6179G", "-6180A", "G6195T", "T6196G", "A6200G", "G6201A", "-6204C", "-6210T", "-6214A", "G6218-", "G6220-", "A6221-", "G6224-", "G6225-", "A6226-", "G6227-", "A6228-", "A6229-", "A6230-", "T6231-", "A6232-", "A6233-", "A6234-", "A6235-", "C6238T", "T6242A", "C6253T", "C6262A", "A6263T", "A6269G", "A6270G", "T6271G", "A6273C", "G6274T", "A6275-", "T6276-", "G6277-", "C6278A", "A6281C", "-6287A", "A6288G", "T6289G", "A6292G", "C6293A", "T6299A", "C6318T", "G6323A", "A6324G", "A6330G", "T6331G", "A6333C", "T6334A", "G6339T", "C6340G", "G6349A", "A6353C", "G6354A", "T6355C", "A6374T", "G6392A", "C6397A", "A6403G", "T6424C", "G6451A", "T6493C", "G6526A", "G6578A", "G6604A", "G6647C", "A6649G", "A6734G", "T6735A", "A6736T", "A6770T", "T6772A", "A6779C", "C6790T", "A6799C", "A6801G", "A6803G", "A6820G", "-6830A", "-6831G", "-6832G", "A6836-", "A6837-", "T6838-", "C6892T", "C6894A", "-6957G", "G6963C", "-6968T", "-6969G", "-6972A", "-6975C", "-6978C", "-6979A", "-6983T", "-6985A", "A6992-", "C6993-", "T6994-", "G6995-", "T7003-", "-7004G", "-7009G", "C7012T", "C7020A", "C7024T", "G7026A", "A7088C", "T7099A", "G7101A", "A7102G", "C7124T", "A7151G", "C7153G", "T7159C", "A7161G", "A7169G", "G7181A", "G7182T", "G7197A", "G7198A", "A7237T", "A7238C", "G7246A", "A7306G", "A7315G", "A7348G", "A7373G", "A7376G", "T7433A", "G7453A", "C7463A", "G7552A", "A7604G", "C7625T", "T7626A", "G7627T", "G7628T", "A7629C", "G7630A", "T7642A", "C7651A", "G7666A", "T7675C", "C7678T", "G7688A", "A7690T", "A7743T", "A7744C", "G7759A", "G7790A", "C7792T", "A7799G", "A7832G", "G7835A", "A7846G", "G7857A", "T7888C", "A7915G", "C7941A", "C7951A", "A7963C", "G8001C", "A8008G", "G8017A", "A8032G", "C8047T", "T8112C", "C8171A", "G8204A", "T8209C", "T8227C", "T8268C", "A8276G", "T8279G", "A8308G", "G8317A", "T8321G", "T8322C", "G8330T", "C8331T", "G8354A", "T8366A", "-8370A", "-8374G", "A8396G", "G8404A", "C8406A", "G8407A", "T8426G", "C8460T", "G8476A", "C8480T", "T8505G", "G8506T", "T8507A", "G8528A", "G8554C", "T8595G", "C8640T", "A8642G", "T8646C", "T8666A", "T8685C", "G8789T", "G8795T", "C8796A", "G8830C", "T8832C", "A8851G", "G8852A", "T8864C", "A8874G", "G8882A", "G8929A", "A8932T"], "INT": ["E10D", "M50I", "I101L", "L234F"], "RT-p51": ["E6D", "M41L", "I142V", "S162C", "Q207K", "L210W", "T215D", "M245K", "P272A", "I326V", "Q334L", "R356K", "V381I", "K390R"], "RT-p66": ["E6D", "M41L", "I142V", "S162C", "Q207K", "L210W", "T215D", "M245K", "P272A", "I326V", "Q334L", "R356K", "V381I", "K390R", "K451R", "R461K", "S468T"], "gp120": ["A2T", "V10I", "T21N", "V37I", "E59G", "S87G", "T100K", "D105N", "-106V", "-107R", "S109D", "S114M", "-116D", "-117T", "-118S", "-119M", "-120T", "G124-", "E125-", "I126-", "K127-", "S130T", "S136K", "I137L", "N139G", "K140T", "M141K", "K143-", "Y145R", "L147I", "Y149N", "P155L", "D157S", "D159G", "N160T", "S162M", "S167H", "T174S", "V180I", "E265Q", "K309Q", "K315N", "Q316R", "I317V", "-326R", "T347N", "-368S", "-370A", "-372W", "-373N", "-375T", "-376G", "-384D", "-385T", "P389Q", "R391K", "R416K", "N433E", "E436G", "T439V", "G443I", "R448K", "K462Q"], "gp41": ["M24V", "T25A", "L44M", "L108Y", "D109S", "D113E", "D129N", "Q147L", "N157S", "D163N", "N166E", "I177V", "V178I", "R185K", "H209R", "P213Q", "E220D", "R233T", "G235R", "I270T", "Q290K", "V301I", "V322A", "I325V", "L340A", "A343F"], "nef": ["-10M", "-11G", "R21K", "R22K", "D28E", "H40Y", "S45N", "C55V", "R71T", "L85V", "Y102H", "D108E", "Y115H", "E151D", "Q152K", "C163S", "Q170R", "R178G", "M194V", "R196K", "E197V"], "p17": ["E12D", "R30Q", "E55A", "R58K", "Q65H", "R91K", "E93K", "K95D", "D102E", "E106A", "K110E", "D121G", "S126N"], "p2": ["T12A"], "p6": ["S14I", "F15M", "R16-", "F17-", "G18-", "E19-", "E20-", "T21-", "T22-", "S25P", "E34D"], "p7": ["G4S", "F6I", "K26R"], "pro": ["P39T", "I64V"], "rev": ["K14R", "F21L", "Q51H", "T54A", "D57N", "T62D", "P67S", "A108E"], "tat": ["N24P", "T39I", "T40K", "A58P", "Q63K", "V67A", "P81Q", "K85T"], "vif": ["R19N", "V25I", "M29I", "Y30H", "H48N", "R92E", "D101G", "L109Q", "N122Q", "L125V", "R127H", "I128L", "N140K", "K158R", "S186N", "H187E", "H192Q"], "vpr": ["P14R", "Y15D", "L20I", "S28N", "Y45H", "T84Q", "Q86R", "R88A", "A89R"], "vpu": ["L7A", "A16T", "T24S", "I28L", "R41K", "R47A"]}, "labels": {"aa": "INT: E10D, M50I, I101L, L234F; RT-p51: E6D, M41L, I142V, S162C, Q207K, L210W, T215D, M245K, P272A, I326V, Q334L, R356K, V381I, K390R; RT-p66: E6D, M41L, I142V, S162C, Q207K, L210W, T215D, M245K, P272A, I326V, Q334L, R356K, V381I, K390R, K451R, R461K, S468T; gp120: A2T, V10I, T21N, V37I, E59G, S87G, T100K, D105N, -106V, -107R, S109D, S114M, -116D, -117T, -118S, -119M, -120T, G124-, E125-, I126-, K127-, S130T, S136K, I137L, N139G, K140T, M141K, K143-, Y145R, L147I, Y149N, P155L, D157S, D159G, N160T, S162M, S167H, T174S, V180I, E265Q, K309Q, K315N, Q316R, I317V, -326R, T347N, -368S, -370A, -372W, -373N, -375T, -376G, -384D, -385T, P389Q, R391K, R416K, N433E, E436G, T439V, G443I, R448K, K462Q; gp41: M24V, T25A, L44M, L108Y, D109S, D113E, D129N, Q147L, N157S, D163N, N166E, I177V, V178I, R185K, H209R, P213Q, E220D, R233T, G235R, I270T, Q290K, V301I, V322A, I325V, L340A, A343F; nef: -10M, -11G, R21K, R22K, D28E, H40Y, S45N, C55V, R71T, L85V, Y102H, D108E, Y115H, E151D, Q152K, C163S, Q170R, R178G, M194V, R196K, E197V; p17: E12D, R30Q, E55A, R58K, Q65H, R91K, E93K, K95D, D102E, E106A, K110E, D121G, S126N; p2: T12A; p6: S14I, F15M, R16-, F17-, G18-, E19-, E20-, T21-, T22-, S25P, E34D; p7: G4S, F6I, K26R; pro: P39T, I64V; rev: K14R, F21L, Q51H, T54A, D57N, T62D, P67S, A108E; tat: N24P, T39I, T40K, A58P, Q63K, V67A, P81Q, K85T; vif: R19N, V25I, M29I, Y30H, H48N, R92E, D101G, L109Q, N122Q, L125V, R127H, I128L, N140K, K158R, S186N, H187E, H192Q; vpr: P14R, Y15D, L20I, S28N, Y45H, T84Q, Q86R, R88A, A89R; vpu: L7A, A16T, T24S, I28L, R41K, R47A"}}}]}, {"name": "B_NODE_0000017", "node_attrs": {"div": 0.15258000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["-305A", "T641C", "G3439A", "G3442A", "T3505A", "A4148G", "A4988T", "T5448A", "G6345T", "G6578A", "T6835-", "-6996A", "-7001A", "-7006T", "C7008-", "G7089A", "C7463A", "G7627A", "G7658C", "C8382T", "G8870A"], "INT": ["T125A"], "RT-p51": ["T386I"], "RT-p66": ["I135T", "T386I"], "gp120": ["R164M"], "gp41": ["E119Q"], "nef": ["P14S"], "rev": ["T54K"], "tat": ["N24K"], "vif": ["E134D"], "vpr": ["Q77R"]}, "labels": {"aa": "INT: T125A; RT-p51: T386I; RT-p66: I135T, T386I; gp120: R164M; gp41: E119Q; nef: P14S; rev: T54K; tat: N24K; vif: E134D; vpr: Q77R"}}, "children": [{"name": "B_NODE_0000018", "node_attrs": {"div": 0.15524000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C151A", "T155G", "T992G", "G1078C", "T2917C", "-5804A", "-5807T", "T6205G", "G6218-", "G6354A", "G6604A", "-6956C", "A6974-", "A6987-", "A7152G", "C7153T", "G7929A", "C7939T", "T8543C", "C8960A", "T8966C"], "RT-p51": ["M245E"], "RT-p66": ["M245E"], "gp120": ["S167N", "N433S"], "gp41": ["D113N"], "nef": ["M182V", "C206*"], "p24": ["G116A"], "rev": ["P31S"], "tat": ["T39I", "A58P", "A74T", "P77L"]}, "labels": {"aa": "RT-p51: M245E; RT-p66: M245E; gp120: S167N, N433S; gp41: D113N; nef: M182V, C206*; p24: G116A; rev: P31S; tat: T39I, A58P, A74T, P77L"}}, "children": [{"name": "B_NODE_0000019", "node_attrs": {"div": 0.16651000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A359G", "A389G", "G518A", "A576G", "T636C", "C890T", "T988C", "G1019A", "C1211T", "C1229T", "C1354G", "G1404A", "A1500C", "G1562A", "G1643A", "A1664G", "A1691G", "A1715G", "G2682A", "A3027G", "G3093A", "C3178T", "C3303T", "A3304G", "G3385A", "C3589T", "G3664A", "G3667A", "T3757A", "C3763T", "C3856T", "A4093G", "T4412C", "T4471C", "G4695A", "C4728A", "C4871A", "T4973C", "G5225A", "G5267A", "C5356T", "T5391C", "C5444A", "C5445T", "T5471A", "A5560G", "T5578C", "C5615A", "C5679T", "C5686T", "G5700A", "A5781G", "-5806A", "-5809G", "-5810G", "G6079A", "-6175T", "A6251G", "G6267A", "G6277A", "C6278A", "A6327G", "T6457A", "A6508G", "T6641A", "A6779G", "G6802A", "G6848A", "A6854G", "C6862T", "G6884A", "T6885C", "A6937G", "C7201T", "G7291A", "C7311G", "C7313A", "G7441A", "G7640A", "G7773A", "A7782G", "G7790A", "A7791G", "A7915G", "G8030C", "G8105A", "C8145T", "C8213T", "C8221A", "C8223T", "C8293T", "T8382G", "C8386A", "A8458G", "T8595G", "A8643G", "G8795C", "C8796A", "A8837G", "A8851T", "G8858A", "A8874G", "T9068C", "T9075-"], "RT-p51": ["G196E", "K311R", "G333E"], "RT-p66": ["G196E", "K311R", "G333E"], "gp120": ["I133V", "S263T", "-328N", "N334E", "V344T", "-375E", "-380T"], "gp41": ["T3G", "L4T", "N160S", "D163S", "A243P", "A268T", "A281V", "T307I"], "nef": ["A15D", "K39R", "L85V", "I101V", "E151D", "Q152K", "Q170L", "R178G"], "p17": ["R30K", "T81A"], "p24": ["H87Q", "M96I", "A208G", "G225S"], "p7": ["T12P"], "rev": ["S61T", "S86N"], "tat": ["T23N", "F32Y", "S62G", "S68P"], "vif": ["H48N"], "vpr": ["G41S", "A55T", "T84I", "S96P"], "vpu": ["L27F", "I28L"]}, "labels": {"aa": "RT-p51: G196E, K311R, G333E; RT-p66: G196E, K311R, G333E; gp120: I133V, S263T, -328N, N334E, V344T, -375E, -380T; gp41: T3G, L4T, N160S, D163S, A243P, A268T, A281V, T307I; nef: A15D, K39R, L85V, I101V, E151D, Q152K, Q170L, R178G; p17: R30K, T81A; p24: H87Q, M96I, A208G, G225S; p7: T12P; rev: S61T, S86N; tat: T23N, F32Y, S62G, S68P; vif: H48N; vpr: G41S, A55T, T84I, S96P; vpu: L27F, I28L"}}, "children": [{"name": "MH078532", "node_attrs": {"div": 0.22912000000000002, "accession": "MH078532", "clade_membership": {"value": "B"}, "country": {"value": "AR"}, "date": {"value": 2015.0}, "Strain_name": {"value": "DEMB15AR013"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A263G", "A301G", "G361A", "A374G", "C393A", "A425G", "C467T", "T476C", "T486C", "C516A", "A557G", "A605G", "G607A", "G608A", "A647T", "C662T", "C679T", "G702A", "G703A", "C707T", "A708G", "A725G", "A730T", "T734C", "C746T", "T749A", "C771G", "C773A", "A774T", "G818A", "A833G", "G911A", "A959G", "T978C", "G980A", "A1002G", "A1025C", "A1079G", "C1136T", "A1142G", "T1148C", "C1175T", "G1184A", 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"G8880A", "T8881C", "G8882A", "A8886G", "G8924A", "G8955A", "C8966A", "T8971C", "A9009-", "T9074C", "C9078T", "T9109A"], "INT": ["E11D", "V31I", "A38N", "L45Q", "I113V", "S119P", "A125T", "F181L", "E212A", "I220L", "D253E", "D256E", "I268L"], "RT-p51": ["I135T", "E245V", "P272A", "T286A", "V292I", "E300Q", "I309V", "I329L", "T369A", "E370Q", "A400T", "T403V"], "RT-p66": ["E245V", "P272A", "T286A", "V292I", "E300Q", "I309V", "I329L", "T369A", "E370Q", "A400T", "T403V", "A446S", "L452S", "Q524E"], "gp120": ["A3T", "E4K", "Q5D", "T35P", "V37A", "V57K", "N64S", "N71K", "N102R", "T104S", "D105N", "-106V", "-107T", "S109T", "S114V", "S115T", "-116R", "-117G", "-118M", "-119R", "-120E", "G124-", "I126M", "K127Q", "T134S", "T135E", "S136G", "N139D", "M141I", "Q142R", "L151M", "V153L", "P155S", "N158S", "N160S", "S162D", "V180T", "S181T", "N201T", "Q230H", "F249I", "V258I", "N261K", "E265K", "N267T", "T269I", "N272G", "H280S", "I281F", "R287S", "A288T", "F289W", "Q300K", "H302Y", "N304D", "S306N", "R307G", "K309E", "K315R", "A318V", "I319T", "F325H", "-326F", "V332I", "S336P", "S337M", "T360S", "Q361K", "-368H", "-370G", "-372W", "-373S", "-379N", "L388I", "Q414N", "R416T", "S418T", "T427I", "S433I", "T439I", "K462R", "E464Q", "K472E"], "gp41": ["M7V", "S23A", "M24T", "M54T", "V69L", "K77R", "L108V", "E110Y", "R122K", "E123K", "D129E", "L130F", "I135L", "E151K", "K154S", "T165S", "K172R", "M176I", "V178I", "V187I", "A212V", "P216L", "D230G", "G235N", "T239H", "I266T", "V267A", "V281I", "V321I", "I325F", "G326C", "A328G", "R334T"], "nef": ["W5L", "R8C", "S9G", "-10M", "-11G", "S14A", "E18K", "D28V", "A32P", "A33V", "A49V", "T51N", "A53P", "Q107R", "H116N", "E149D", "E158T", "N162L", "P176K", "E177D", "V180T", "M194V", "D205N"], "p17": ["S9N", "L61I", "R91K", "A115V", "G123K", "S125G", "Y132F"], "p2": ["S10P", "A11G", "T12N"], "p24": ["P14A", "I15L", "V86A", "I91V", "E98D", "R154K", "S178T", "A194S", "V230I"], "p6": ["T8S", "Q26P"], "p7": ["E21D", "A54V"], "pro": ["N37S", "R41G", "P63Q", "I64V", "L93I"], "rev": ["D11H", "K14Q", "L18I", "E32A", "K54S", "I55L", "D57A", "P67S", "A68K", "P77S", "L78I", "S99D", "I102V", "S112P"], "tat": ["Q17R", "A21P", "R57A", "Q60P", "T64N", "H65N", "L77F", "P81S"], "vif": ["R19N", "M29I", "Y30H", "K33R", "R90K", "K91T", "R92K", "R93K", "S95V", "L109R", "D113N", "E117A", "S130R", "T151A", "T155P", "K158E", "K160R", "R167K", "Q178R", "K179E", "G185E"], "vpr": ["E6R", "T19A", "E25D", "S28N", "L67M", "R77H", "A93T"], "vpu": ["P3N", "Q5L", "I6V", "L7W", "A8S", "V10I", "A11T", "V15A", "I17L", "I18L", "K38R", "R41K", "E60D", "L61Q", "S62E", "A63Q", "V65A", "E66T", "M67L", "G68L", "-70E", "-71M", "-72G", "H74D", "D78N"]}, "labels": {"aa": "INT: E11D, V31I, A38N, L45Q, I113V, S119P, A125T, F181L, E212A, I220L, D253E, D256E, I268L; RT-p51: I135T, E245V, P272A, T286A, V292I, E300Q, I309V, I329L, T369A, E370Q, A400T, T403V; RT-p66: E245V, P272A, T286A, V292I, E300Q, I309V, I329L, T369A, E370Q, A400T, T403V, A446S, L452S, Q524E; gp120: A3T, E4K, Q5D, T35P, V37A, V57K, N64S, N71K, N102R, T104S, D105N, -106V, -107T, S109T, S114V, S115T, -116R, -117G, -118M, -119R, -120E, G124-, I126M, K127Q, T134S, T135E, S136G, N139D, M141I, Q142R, L151M, V153L, P155S, N158S, N160S, S162D, V180T, S181T, N201T, Q230H, F249I, V258I, N261K, E265K, N267T, T269I, N272G, H280S, I281F, R287S, A288T, F289W, Q300K, H302Y, N304D, S306N, R307G, K309E, K315R, A318V, I319T, F325H, -326F, V332I, S336P, S337M, T360S, Q361K, -368H, -370G, -372W, -373S, -379N, L388I, Q414N, R416T, S418T, T427I, S433I, T439I, K462R, E464Q, K472E; gp41: M7V, S23A, M24T, M54T, V69L, K77R, L108V, E110Y, R122K, E123K, D129E, L130F, I135L, E151K, K154S, T165S, K172R, M176I, V178I, V187I, A212V, P216L, D230G, G235N, T239H, I266T, V267A, V281I, V321I, I325F, G326C, A328G, R334T; nef: W5L, R8C, S9G, -10M, -11G, S14A, E18K, D28V, A32P, A33V, A49V, T51N, A53P, Q107R, H116N, E149D, E158T, N162L, P176K, E177D, V180T, M194V, D205N; p17: S9N, L61I, R91K, A115V, G123K, S125G, Y132F; p2: S10P, A11G, T12N; p24: P14A, I15L, V86A, I91V, E98D, R154K, S178T, A194S, V230I; p6: T8S, Q26P; p7: E21D, A54V; pro: N37S, R41G, P63Q, I64V, L93I; rev: D11H, K14Q, L18I, E32A, K54S, I55L, D57A, P67S, A68K, P77S, L78I, S99D, I102V, S112P; tat: Q17R, A21P, R57A, Q60P, T64N, H65N, L77F, P81S; vif: R19N, M29I, Y30H, K33R, R90K, K91T, R92K, R93K, S95V, L109R, D113N, E117A, S130R, T151A, T155P, K158E, K160R, R167K, Q178R, K179E, G185E; vpr: E6R, T19A, E25D, S28N, L67M, R77H, A93T; vpu: P3N, Q5L, I6V, L7W, A8S, V10I, A11T, V15A, I17L, I18L, K38R, R41K, E60D, L61Q, S62E, A63Q, V65A, E66T, M67L, G68L, -70E, -71M, -72G, H74D, D78N"}}}, {"name": "AB287366", "node_attrs": {"div": 0.21448, "accession": "AB287366", "clade_membership": {"value": "B"}, "country": {"value": "JP"}, "date": {"value": 2005.0}, "Strain_name": {"value": "DR7060"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A47G", "C152T", "G206A", "G265A", "C281A", "G354A", "T396C", "A419G", "A435T", "T495A", "A521G", "A530G", "G542A", "T635C", "C747A", "T749G", "T824C", "C827T", "A839G", "T852A", "C926A", "G963T", "A968C", "G987C", "A1074G", "G1077A", "A1079C", "A1090G", "C1118T", "A1127G", "G1205A", "C1220T", "G1388A", "A1415G", "T1421C", "T1444C", "T1452A", "G1455A", "A1458G", "G1477A", "T1481G", "A1485G", "A1528T", "T1559C", "A1588G", "C1598T", "G1619C", "G1621A", "T1676C", "G1769A", "C1775A", "G1784A", "A1804G", "A1819G", "A1839G", "G1846A", "A1852G", "A1915G", "A1930G", "C2003A", "T2005G", "G2009A", "G2027A", "C2080A", "T2158C", "A2215G", "A2230G", "C2281T", "C2353T", "A2419G", "G2422A", "G2428A", "T2443C", "A2459G", "G2518A", "A2519C", "T2608C", "A2623G", "C2635T", "G2656A", "A2726G", "A2727G", "C2749T", "A2764G", "T2829A", "G2902A", "A2929T", "G2984A", "A3001G", "G3046A", "A3080G", "C3095A", "A3097C", "A3124G", "A3136G", "G3173A", "A3193G", "C3225A", "C3232T", "T3252C", "T3266C", "T3328C", "A3439G", "A3443T", "T3497C", "G3520A", "G3523A", "T3530C", "A3535G", "C3542T", "G3553A", "T3613A", "A3703G", "A3727C", "T3754C", "G3755T", "T3829C", "C3843T", "T3853C", "G3859A", "T3904C", "T3943C", "G3961A", "C3976T", "A3982G", "A3985G", "A4012T", "A4060G", "A4076C", "A4105G", "A4145G", "A4174G", "A4178G", "G4267A", "G4294A", "A4306G", "A4384G", "C4543T", "G4582A", "A4683G", "G4694A", "T4702C", "G4708A", "C4726G", "A4737G", "G4741A", "A4748G", "A4760G", "A4782G", "A4857G", "G4881A", "A4882C", "C4898T", "T4910C", "T4925C", "A4937C", "T4952G", "A4956C", "G4966A", "T4969G", "A4976T", "T4988C", "A5012G", "T5016A", "G5040A", "A5046G", "A5049G", "A5059G", "T5062G", "T5073C", "A5085G", "G5086C", "G5100C", "A5103C", "G5176A", "A5179G", "T5188A", "T5194A", "A5200G", "C5213G", "A5233G", "C5242A", "T5292C", "A5312G", "A5330G", "A5335G", "T5354C", "A5355C", "G5359A", "G5370A", "A5397T", "G5427A", "A5448T", "T5487C", "A5491T", "A5493G", "A5494T", "G5501C", "C5502A", "C5511T", "T5515C", "C5554A", "G5557A", "A5558G", "A5587G", "A5601G", "C5611T", "A5612C", "A5613T", "T5616A", "T5617C", "A5619G", "C5620T", "A5622T", "G5629A", "A5643T", "G5653A", "T5669C", "G5673A", "A5680G", "C5713G", "G5730A", "G5747C", "-5800G", "-5805G", "C5917T", "A5965G", "T6007C", "G6023T", "A6092G", "C6097A", "T6100C", "T6134C", "T6160C", "A6167G", "-6170T", "-6171A", "-6172T", "-6174A", "-6180G", "A6186C", "C6190T", "G6201A", "T6202C", "-6203T", "-6204T", "G6207A", "A6209-", "G6211-", "-6218G", "-6219A", "-6222A", "-6223G", "T6242A", "G6261T", "C6262G", "A6275C", "T6276A", "G6311A", "T6315C", "A6320G", "A6324G", "T6325G", "A6326G", "A6344G", "T6345C", "G6368A", "T6369C", "T6385C", "A6394G", "G6425A", "C6427A", "A6443C", "G6466T", "A6476T", "A6489C", "G6547A", "C6563A", "A6574T", "A6584G", "A6587C", "A6602T", "A6605G", "T6637C", "G6638A", "A6639G", "A6640G", "G6644A", "G6647C", "A6649C", "C6673T", "G6743A", "A6767C", "A6781C", "A6809G", "T6810A", "G6819A", "-6830G", "-6831G", "-6832G", "A6833G", "-6835G", "T6849A", "C6850A", "T6856G", "A6858C", "A6865G", "C6894G", "C6935G", "A6936G", "G6940A", "A6947G", "G6948A", "C6951G", "T6953A", "G6954T", "-6957T", "T6958G", "G6963A", "G6970-", "T6976-", "A6986-", "T6988-", "-6997A", "-6998G", "-6999G", "-7000T", "T7003-", "T7006C", "-7008A", "-7009C", "A7010C", "A7021G", "G7048A", "A7088C", "C7124T", "T7144A", "T7147A", "A7154G", "A7155G", "G7160A", "G7162A", "C7165T", "C7171T", "G7190A", "G7197A", "G7246A", "A7256G", "A7275G", "G7276A", "A7315G", "A7376G", "T7433C", "G7440A", "G7517A", "G7519A", "G7589A", "A7607T", "G7608C", "T7622A", "C7625T", "T7626A", "A7627T", "G7631A", "T7642C", "G7660A", "A7689G", "A7690C", "C7702T", "T7715G", "G7720A", "G7759A", "C7770A", "A7771C", "A7799C", "T7813C", "A7846G", "A7868G", "G7885A", "C7906T", "T7968C", "A7971G", "A7998G", "G8001C", "C8005A", "A8006G", "A8008G", "C8044G", "C8051T", "G8052T", "G8114C", "T8155C", "T8210C", "T8214A", "G8242A", "T8268G", "T8281G", "A8288T", "A8323C", "G8365T", "T8369A", "G8372-", "T8375-", "C8383A", "A8441C", "G8446A", "A8455C", "A8468G", "A8469C", "G8531T", "G8537C", "C8590G", "T8603C", "C8687T", "T8740C", "C8809T", "A8812C", "A8823G", "T8829G", "G8830T", "T8832C", "G8846T", "G8848A", "C8849T", "G8888A", "G8922A", "G8924C", "C8975G", "T8976A", "T9012C", "C9017T", "T9051A"], "INT": ["A23V", "I101L", "T124A", "I135V", "I203M"], "RT-p51": ["K122E", "I142L", "K211G", "Q278H", "E297K", "I329V", "Q334N", "A360T", "T377K", "I386T", "T403M"], "RT-p66": ["K122E", "T135I", "I142L", "K211G", "Q278H", "E297K", "I329V", "Q334N", "A360T", "T377K", "I386T", "T403M", "T450S", "S468P", "H483Y", "A554S"], "gp120": ["V57L", "I80V", "-106Y", "-107N", "N111T", "-116N", "-117L", "-118K", "-122E", "-123K", "S130T", "S136M", "K138E", "M141Q", "Q142K", "V153I", "V154A", "I156V", "D157G", "N158G", "M164A", "V172T", "A191T", "I197L", "N201K", "K204N", "T208S", "K212T", "L237I", "E240D", "I244V", "T250S", "N251D", "E262R", "V264I", "E265H", "D297N", "I305L", "K309D", "I319E", "R322K", "-326G", "N327E", "V332K", "Q335P", "T347S", "Q361G", "S365D", "T366S", "W367M", "-368L", "-370D", "-376G", "-377N", "-379L", "I386-", "T387-", "R412Q", "N434G", "E436K", "D446N", "R448K", "I468V", "K474R"], "gp41": ["T25A", "R46K", "V72I", "A96T", "A101T", "S107T", "L108Y", "D109E", "E110K", "D129G", "S138A", "A156D", "N166Q", "T189A", "I222T", "E223G", "D232G", "R233T", "D247E", "R250L", "V271L", "F304Y", "V322G", "G326W", "I329F", "L340F"], "nef": ["R8L", "S9R", "S14D", "R35Q", "E38A", "I43L", "E63D", "E65D", "A83G", "V133T", "A156V", "N157T", "N161D", "C163V", "M168I", "S169N", "V182I", "M194I"], "p17": ["V7I", "I34L", "S54T"], "p2": ["V7A", "S10T", "A11T", "T12A"], "p24": ["L6M", "S41T", "A78S", "E79D", "V86P", "I115V", "A116T", "N120S"], "p6": ["D32E", "K42R", "N47S"], "p7": ["G4D", "N5K", "R7G", "E21V", "K41R", "E51D", "R52K"], "pro": ["K14R", "H69K", "A71T", "V77I"], "rev": ["T15A", "Q51H", "Q53R", "K54A", "R66G", "A68V", "C89S"], "tat": ["R7S", "K24N", "I39L", "T40S", "G42A", "Y47H", "Q60K", "D61S", "K71E", "S87P"], "vif": ["K33G", "V39S", "R41K", "T47S", "I51V", "S52N", "I66V", "K91E", "S95R", "D99T", "E117D", "N122K", "I124L", "R127H", "I128R", "S144T", "A152T", "I154V", "T155A", "K158R", "I159R", "R167A", "D172H"], "vpr": ["S28R", "P37A", "I63T", "I70V", "I84L", "R85Q", "A89T"], "vpu": ["Q2S", "P3Q", "Q5Y", "A8T", "L12F", "A16T", "V21A", "I25V", "Q36E", "R47T"]}, "labels": {"aa": "INT: A23V, I101L, T124A, I135V, I203M; RT-p51: K122E, I142L, K211G, Q278H, E297K, I329V, Q334N, A360T, T377K, I386T, T403M; RT-p66: K122E, T135I, I142L, K211G, Q278H, E297K, I329V, Q334N, A360T, T377K, I386T, T403M, T450S, S468P, H483Y, A554S; gp120: V57L, I80V, -106Y, -107N, N111T, -116N, -117L, -118K, -122E, -123K, S130T, S136M, K138E, M141Q, Q142K, V153I, V154A, I156V, D157G, N158G, M164A, V172T, A191T, I197L, N201K, K204N, T208S, K212T, L237I, E240D, I244V, T250S, N251D, E262R, V264I, E265H, D297N, I305L, K309D, I319E, R322K, -326G, N327E, V332K, Q335P, T347S, Q361G, S365D, T366S, W367M, -368L, -370D, -376G, -377N, -379L, I386-, T387-, R412Q, N434G, E436K, D446N, R448K, I468V, K474R; gp41: T25A, R46K, V72I, A96T, A101T, S107T, L108Y, D109E, E110K, D129G, S138A, A156D, N166Q, T189A, I222T, E223G, D232G, R233T, D247E, R250L, V271L, F304Y, V322G, G326W, I329F, L340F; nef: R8L, S9R, S14D, R35Q, E38A, I43L, E63D, E65D, A83G, V133T, A156V, N157T, N161D, C163V, M168I, S169N, V182I, M194I; p17: V7I, I34L, S54T; p2: V7A, S10T, A11T, T12A; p24: L6M, S41T, A78S, E79D, V86P, I115V, A116T, N120S; p6: D32E, K42R, N47S; p7: G4D, N5K, R7G, E21V, K41R, E51D, R52K; pro: K14R, H69K, A71T, V77I; rev: T15A, Q51H, Q53R, K54A, R66G, A68V, C89S; tat: R7S, K24N, I39L, T40S, G42A, Y47H, Q60K, D61S, K71E, S87P; vif: K33G, V39S, R41K, T47S, I51V, S52N, I66V, K91E, S95R, D99T, E117D, N122K, I124L, R127H, I128R, S144T, A152T, I154V, T155A, K158R, I159R, R167A, D172H; vpr: S28R, P37A, I63T, I70V, I84L, R85Q, A89T; vpu: Q2S, P3Q, Q5Y, A8T, L12F, A16T, V21A, I25V, Q36E, R47T"}}}]}, {"name": "B_NODE_0000020", "node_attrs": {"div": 0.16204000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A424G", "C467T", "G608A", "G810A", "C902T", "C1060A", "G1313A", "C1403T", "G1486A", "C1501T", "A1543G", "T1679C", "A1714C", "C2626A", "G2887A", "A3247G", "A3280G", "G3364A", "T3412C", "C3496T", "T3497C", "G3814A", "T4075C", "A4076C", "A4112G", "C4321T", "A4531G", "A4721C", "G4735A", "A4774G", "G4835A", "A5090G", "G5140A", "A5375G", "C5563A", "C5614T", "A5734C", "-5800G", "T6181-", "-6210T", "-6214A", "-6216T", "-6219A", "G6525A", "G6535A", "G6547A", "T6598C", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "C6692G", "A6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6735A", "A6818G", "-6957C", "-6998A", "-6999A", "-7000T", "-7002G", "A7102C", "A7158G", "G7307A", "G7309A", "G7310A", "T7433C", "A7532C", "G7552A", "C7651T", "G7777A", "A7796T", "A7801T", "A7847G", "A7998G", "C8009A", "C8065T", "-8370A", "A8425T"], "INT": ["I101L", "I113V"], "RT-p51": ["D177E"], "RT-p66": ["D177E", "S468P"], "gp120": ["K138G", "R224K", "S278G", "R322G", "-377S"], "gp41": ["V2I", "N157S", "T165S", "I182V", "D232G", "R334T"], "nef": ["D28V"], "p17": ["D121A"], "p24": ["V27I", "T110N"], "p6": ["E12A"], "p7": ["R7K", "T12I", "K26R"], "rev": ["L73F"], "tat": ["E2D", "Q63K"], "vif": ["V39L", "E45D", "R50K", "K63R", "G185E"], "vpu": ["P3S", "I43L"]}, "labels": {"aa": "INT: I101L, I113V; RT-p51: D177E; RT-p66: D177E, S468P; gp120: K138G, R224K, S278G, R322G, -377S; gp41: V2I, N157S, T165S, I182V, D232G, R334T; nef: D28V; p17: D121A; p24: V27I, T110N; p6: E12A; p7: R7K, T12I, K26R; rev: L73F; tat: E2D, Q63K; vif: V39L, E45D, R50K, K63R, G185E; vpu: P3S, I43L"}}, "children": [{"name": "JN692452", "node_attrs": {"div": 0.21001000000000003, "accession": "JN692452", "clade_membership": {"value": "B"}, "country": {"value": "BR"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04BR1051"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C189T", "T200C", "T201C", "A216G", "C258T", "A286G", "G365C", "G369C", "T396C", "T426C", "G452A", "A474G", "G520A", "C536A", "C537A", "C540A", "A571T", "G678A", "A706G", "G822A", "C823A", "T861G", "G911A", "C926T", "A977G", "G987C", "T988C", "A1010T", "G1019A", "A1025T", "A1049G", "A1073G", "C1118T", "C1136T", "A1145G", "C1175T", "T1244C", "G1271T", "T1331C", "C1354G", "T1385C", "C1406T", "G1455T", "A1458G", "A1493G", "G1499A", "T1517C", "C1535T", "G1562A", "A1565G", "T1610G", "G1619A", "C1656T", "A1657C", "G1760A", "A1777G", "A1781G", "C1782A", "G1794A", "T1796C", "A1907C", "G1920A", "C1986T", "C1996T", "A2006G", "C2075A", "C2080T", "T2209C", "C2263T", "C2281T", "A2293G", "T2365G", "A2368G", "A2461G", "C2503T", "T2597C", "T2605A", "T2620C", "A2629G", "T2632G", "C2635A", "A2734G", "C2740T", "C2776T", "C2797A", "T2829A", "G2830A", "A2842G", "G2914A", "A2937G", "A2938G", "G2957T", "C2960T", "A2974G", "G2984A", "G3019A", "T3059A", "G3094A", "G3099A", "C3100T", "A3103G", "G3154A", "G3162A", "T3165C", "G3205T", 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"E297K", "S322T", "G335D", "R356K", "M357T", "E370D", "T377M", "S379G", "A400T", "V435I"], "RT-p66": ["T135I", "I178M", "K281R", "A288S", "E297K", "S322T", "G335D", "R356K", "M357T", "E370D", "T377M", "S379G", "A400T", "V435I", "A446S", "V531I"], "gp120": ["A3E", "E4K", "Q5D", "A32G", "D34N", "V56L", "V57E", "E59K", "N64D", "N66D", "T104I", "D105-", "S109W", "N111S", "S114I", "S115N", "-116S", "-117S", "-118N", "-119V", "-120W", "-121A", "-122N", "-123S", "T134S", "E144N", "Y149N", "D159-", "N160-", "I166V", "A176S", "T208K", "P210Q", "F249I", "Q259H", "E262K", "A288T", "D294Q", "R307G", "T308G", "A318V", "-326K", "T347S", "T360S", "-368G", "-370G", "-372W", "-373S", "-375E", "-376G", "-384D", "-385I", "T387I", "R398M", "R412Q", "R416N", "N420H", "N435R", "T439I", "K474R", "K482R"], "gp41": ["A22V", "R46K", "Q56K", "K77Q", "K90R", "A96N", "A101R", "S102T", "L108R", "D109E", "E110D", "N113G", "R122K", "L130I", "I135L", "E137T", "N140H", "N160T", "K172R", "T189A", "E224G", "R231G", "R233G", "G235T", "T239H", "V267A", "W285C", "N287S", "S299G", "S302G", "F304L", "A312G", "E313G", "R317G", "Q323R", "I325L", "G326C", "R327G", "I329V", "H331N"], "nef": ["-10T", "-11G", "S14N", "A15G", "R17L", "A50N", "T51N", "A53P", "C55V", "A83G", "L85F", "K105Q", "Q107K", "H116N", "Y120F", "Q125H", "V148L", "N157T", "E158A", "N161S", "C163S", "H166S", "S169N", "R178K"], "p1": ["H9S"], "p17": ["E12Q", "N47D", "G62E", "L68I", "Q69K", "Y79F", "A115T", "N124S"], "p2": ["A11S", "T12A"], "p24": ["A31N", "S44A", "V86P", "H87Q", "M96I", "E98D", "E180D", "A208G"], "p6": ["K33R", "L35M", "A39T"], "p7": ["D48E"], "pro": ["N37H", "R41K", "P63L", "K70E", "L93I"], "rev": ["G6E", "L13I", "K20R", "Q49R", "Q51W", "Q53D", "K54E", "D57A", "W58R", "P100S", "Q101E", "V104L", "V109I", "S112P", "*117W"], "tat": ["R7S", "T23N", "Y26F", "K29R", "Q35Y", "V36K", "I39V", "R53G", "P59H", "V67I", "S70P", "P81Q"], "vif": ["K22H", "M29I", "I31V", "S46C", "T47I", "I51V", "T67K", "T74P", "R77K", "L102I", "I159R"], "vpr": ["P37V", "Y45H", "A93P", "S96P"], "vpu": ["L27F", "I28L", "K38R", "E58D", "E60D", "L61Q", "S62E", "A63E", "V65L", "E66-", "M67-", "G68-", "-69V", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: T124N, T206S, I220F; RT-p51: I178M, K281R, A288S, E297K, S322T, G335D, R356K, M357T, E370D, T377M, S379G, A400T, V435I; RT-p66: T135I, I178M, K281R, A288S, E297K, S322T, G335D, R356K, M357T, E370D, T377M, S379G, A400T, V435I, A446S, V531I; gp120: A3E, E4K, Q5D, A32G, D34N, V56L, V57E, E59K, N64D, N66D, T104I, D105-, S109W, N111S, S114I, S115N, -116S, -117S, -118N, -119V, -120W, -121A, -122N, -123S, T134S, E144N, Y149N, D159-, N160-, I166V, A176S, T208K, P210Q, F249I, Q259H, E262K, A288T, D294Q, R307G, T308G, A318V, -326K, T347S, T360S, -368G, -370G, -372W, -373S, -375E, -376G, -384D, -385I, T387I, R398M, R412Q, R416N, N420H, N435R, T439I, K474R, K482R; gp41: A22V, R46K, Q56K, K77Q, K90R, A96N, A101R, S102T, L108R, D109E, E110D, N113G, R122K, L130I, I135L, E137T, N140H, N160T, K172R, T189A, E224G, R231G, R233G, G235T, T239H, V267A, W285C, N287S, S299G, S302G, F304L, A312G, E313G, R317G, Q323R, I325L, G326C, R327G, I329V, H331N; nef: -10T, -11G, S14N, A15G, R17L, A50N, T51N, A53P, C55V, A83G, L85F, K105Q, Q107K, H116N, Y120F, Q125H, V148L, N157T, E158A, N161S, C163S, H166S, S169N, R178K; p1: H9S; p17: E12Q, N47D, G62E, L68I, Q69K, Y79F, A115T, N124S; p2: A11S, T12A; p24: A31N, S44A, V86P, H87Q, M96I, E98D, E180D, A208G; p6: K33R, L35M, A39T; p7: D48E; pro: N37H, R41K, P63L, K70E, L93I; rev: G6E, L13I, K20R, Q49R, Q51W, Q53D, K54E, D57A, W58R, P100S, Q101E, V104L, V109I, S112P, *117W; tat: R7S, T23N, Y26F, K29R, Q35Y, V36K, I39V, R53G, P59H, V67I, S70P, P81Q; vif: K22H, M29I, I31V, S46C, T47I, I51V, T67K, T74P, R77K, L102I, I159R; vpr: P37V, Y45H, A93P, S96P; vpu: L27F, I28L, K38R, E58D, E60D, L61Q, S62E, A63E, V65L, E66-, M67-, G68-, -69V, -70E, -71M, -72G"}}}, {"name": "JF683796", "node_attrs": {"div": 0.21812, "accession": "JF683796", "clade_membership": {"value": "B"}, "country": {"value": "CY"}, "date": {"value": 2009.0}, "Strain_name": {"value": "CY253"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G379A", "A380G", "A386G", "A399C", "G407A", "A419G", "C456T", "T473C", "T495G", "T506C", "C536T", "A562G", "G585A", "T586C", "G615A", "A620G", "C623T", "G629A", "C641A", "G644A", "T668-", "A669-", "A670-", "G687A", "A689C", "T695A", "A697C", "C698A", "A699G", "G703C", "A704T", "A705G", "G712A", "C714A", "G716A", "T749C", "G770A", "A774T", "G818A", "C830T", "C890T", "A920G", "G944A", "G956C", "A968T", "T978C", "G980A", "G992C", "A1002G", "C1040T", "A1090G", "A1142G", "A1173G", "C1174T", "A1196G", "C1211T", "C1220T", "T1263A", "G1271A", "G1298A", "G1394A", "C1439T", "G1443A", "C1447T", "T1452A", "T1462C", "C1490T", "A1498G", "A1525G", "G1532A", "C1550T", "G1552A", "G1589A", "A1664G", "G1687A", "G1736A", "A1745C", "A1746C", "C1749-", "C1750-", "C1751-", "T1752C", "G1769A", "T1771C", "T1790C", "A1804G", "A1843C", "A1857G", 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"C8445A", "A8469C", "C8471T", "G8476C"], "INT": ["S17N", "I72V", "K156N", "I208L", "D256E"], "RT-p51": ["K20R", "K103R", "K122E", "D123E", "I135T", "T165I", "T200A", "K211R", "P294S", "D324E", "K347R", "I386V", "T403V"], "RT-p66": ["K20R", "K103R", "K122E", "D123E", "T165I", "T200A", "K211R", "P294S", "D324E", "K347R", "I386V", "T403V", "A554K", "K558R"], "gp120": ["A32V", "T35P", "V37A", "L58M", "E59A", "W68G", "L94I", "L97V", "N102R", "T104P", "D105I", "S109E", "T112-", "N113-", "S114-", "S115-", "G124-", "I126M", "I133V", "T135K", "I137V", "N139R", "K140G", "M141I", "L151I", "V153L", "T161S", "V180I", "K203E", "N206K", "V226I", "E239K", "I242V", "A253V", "E265A", "R287K", "A291T", "D294E", "D297N", "T308K", "K309E", "N312K", "I317V", "N327-", "-328N", "N334K", "Q335N", "N358D", "T359S", "T366S", "-368L", "N369-", "T371-", "T374-", "-379G", "-380T", "-381M", "-382L", "-383S", "-384N", "-385N", "P389S", "K393R", "Q394L", "I395V", "W399C", "Q400R", "V402L", "K404I", "Y407S", "I411L", "R412K", "Q414I", "I415V", "R416S", "L425V", "D429A", "N432-", "N435S", "T437S", "K472T"], "gp41": ["A14T", "M24L", "N42S", "K77R", "D109N", "E110Q", "Q119E", "D129S", "E148D", "E151K", "K154Q", "I193L", "Q199K", "A212V", "E223K", "G235E", "A243P", "S251T", "C253L", "L254I", "R259H", "I270V", "S293I", "V301I", "N305D", "V311A", "I318V", "V322I", "R324G", "A328G", "I332V", "T334I", "A343L"], "nef": ["R8L", "-10R", "I43L"], "p17": ["R15K", "S54A", "K76R", "V84T", "V94I", "D102E", "S111R", "K114-", "A118T", "T122A", "G123A", "N124D", "S126N", "Q127K"], "p2": ["V7I", "T8I", "S10T", "I13T"], "p24": ["I15L", "E75D", "E79D", "I91V", "N120S", "T148V", "S178T"], "p6": ["S3N", "T23-", "S25P", "I31T", "K42R"], "p7": ["K11R", "K20R", "R29K"], "pro": ["K20R", "V77I", "L89M"], "rev": ["S5R", "D11E", "F21Q", "L22I", "R41Q", "Q53R", "S61T", "A68T", "E69D", "P72D", "D88G", "I102V", "E111D", "S112T", "K115E"], "tat": ["Y47N", "P58T", "V67A", "S68D", "L77F"], "vif": ["H27Y", "M29K", "I31R", "K33G", "K37E", "A62S", "I66V", "S118A", "N122Q", "R127H", "S130R", "D134N", "R167S"], "vpr": ["D7N", "S28R", "H40G", "G41N", "A55T", "L67M", "R77H", "T84I", "A93S"], "vpu": ["L4P", "Q5E", "A8T", "V15A", "A16I", "I18L", "R47I"]}, "labels": {"aa": "INT: S17N, I72V, K156N, I208L, D256E; RT-p51: K20R, K103R, K122E, D123E, I135T, T165I, T200A, K211R, P294S, D324E, K347R, I386V, T403V; RT-p66: K20R, K103R, K122E, D123E, T165I, T200A, K211R, P294S, D324E, K347R, I386V, T403V, A554K, K558R; gp120: A32V, T35P, V37A, L58M, E59A, W68G, L94I, L97V, N102R, T104P, D105I, S109E, T112-, N113-, S114-, S115-, G124-, I126M, I133V, T135K, I137V, N139R, K140G, M141I, L151I, V153L, T161S, V180I, K203E, N206K, V226I, E239K, I242V, A253V, E265A, R287K, A291T, D294E, D297N, T308K, K309E, N312K, I317V, N327-, -328N, N334K, Q335N, N358D, T359S, T366S, -368L, N369-, T371-, T374-, -379G, -380T, -381M, -382L, -383S, -384N, -385N, P389S, K393R, Q394L, I395V, W399C, Q400R, V402L, K404I, Y407S, I411L, R412K, Q414I, I415V, R416S, L425V, D429A, N432-, N435S, T437S, K472T; gp41: A14T, M24L, N42S, K77R, D109N, E110Q, Q119E, D129S, E148D, E151K, K154Q, I193L, Q199K, A212V, E223K, G235E, A243P, S251T, C253L, L254I, R259H, I270V, S293I, V301I, N305D, V311A, I318V, V322I, R324G, A328G, I332V, T334I, A343L; nef: R8L, -10R, I43L; p17: R15K, S54A, K76R, V84T, V94I, D102E, S111R, K114-, A118T, T122A, G123A, N124D, S126N, Q127K; p2: V7I, T8I, S10T, I13T; p24: I15L, E75D, E79D, I91V, N120S, T148V, S178T; p6: S3N, T23-, S25P, I31T, K42R; p7: K11R, K20R, R29K; pro: K20R, V77I, L89M; rev: S5R, D11E, F21Q, L22I, R41Q, Q53R, S61T, A68T, E69D, P72D, D88G, I102V, E111D, S112T, K115E; tat: Y47N, P58T, V67A, S68D, L77F; vif: H27Y, M29K, I31R, K33G, K37E, A62S, I66V, S118A, N122Q, R127H, S130R, D134N, R167S; vpr: D7N, S28R, H40G, G41N, A55T, L67M, R77H, T84I, A93S; vpu: L4P, Q5E, A8T, V15A, A16I, I18L, R47I"}}}]}]}, {"name": "B_NODE_0000021", "node_attrs": {"div": 0.15599000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G369A", "A1002G", "G1643A", "T2499C", "G2686A", "G2828A", "A3247C", "T4701G", "T5062C", "T5626G", "G5802-", "A6179G", "-6212A", "-6214A", "A6275G", "G6425A", "G6774A", "A6834-", "G6963-", "-6969A", "-6971A", "-6981G", "-6982G", "C6993-", "C7124A", "A7161C", "G7589A", "G7720A", "G8805A", "C8934A"], "RT-p51": ["I135T"], "gp120": ["-119M", "M141V", "A191T", "D294K", "R307K", "N311E", "L424I"], "gp41": ["A96S", "H209R", "A212T"], "nef": ["E155K"], "p17": ["E12K"], "p24": ["I91V"], "vif": ["I159T"], "vpu": ["L7I", "H74D"]}, "labels": {"aa": "RT-p51: I135T; gp120: -119M, M141V, A191T, D294K, R307K, N311E, L424I; gp41: A96S, H209R, A212T; nef: E155K; p17: E12K; p24: I91V; vif: I159T; vpu: L7I, H74D"}}, "children": [{"name": "B_NODE_0000022", "node_attrs": {"div": 0.16696000000000003, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A412G", "G471A", "G520A", "C540A", "G614T", "C719T", "C722T", "A812G", "A839G", "T858C", "G980A", "A1007G", "C1403T", "A1450G", "G1472A", "A1500C", "T1752C", "G1794A", "T1796C", "C1828T", "C2488T", "A2579T", "G3046A", "A3080G", "A3387G", "G3490A", "A3505G", "G3755A", "C3756G", "G3866A", "A4174G", "A4243T", "G4642A", "A4737G", "A4774G", "G4861A", "G4995T", "G5087A", "G5226A", "T5293A", "A5432G", "T5492C", "C5530A", "C5548G", "A5607G", "A5612T", "G5647A", "A5718G", "A5790G", "G5839A", "G5861A", "A6009G", "G6023C", "-6210T", "-6219G", "-6222A", "-6223A", "G6266A", "G6267A", "G6280A", "A6281C", "T6299A", "A6303C", "A6443C", "A6476T", "A6489C", "G6647A", "T6735A", "A6767C", "A6776G", "A6781C", "A6785G", "T6787A", "C6800A", "A6801G", "-6968C", "-6980T", "-6984A", "-6990G", "-6991T", "-6993A", "-6997T", "G7101A", "T7106A", "T7144G", "G7168A", "A7533G", "A7604G", "G7630A", "C7701A", "A7706C", "A7755C", "G7773A", "G7777A", "A7873G", "G7885A", "A7955G", "G7956A", "C8009A", "G8170A", "C8294A", "-8371G", "-8373G", "C8440T", "T8582C"], "INT": ["V31I", "K156N"], "RT-p51": ["S162C", "I329V", "K431R"], "RT-p66": ["S162C", "I329V", "K431R", "A554S"], "gp120": ["A3T", "N52S", "Y149N", "I197L", "T208S", "K212T", "I305L", "T308A", "Q316R", "S418T", "I424M"], "gp41": ["K77R", "D109E", "T133N", "I135L", "E151A", "R218E", "G235R", "F304L", "H331N"], "nef": ["A33V"], "p17": ["K26R", "V46I", "G62E", "Q69K", "E93D"], "p2": ["N9S"], "p24": ["E98D"], "p6": ["S25P", "A39T", "S50L"], "p7": ["T12P"], "rev": ["S5R", "D11E", "Q36R", "A108T"], "tat": ["K19R", "G83S"], "vif": ["I51V", "K63R", "A137S"], "vpr": ["G41N"], "vpu": ["Q2V", "V14I", "D78N"]}, "labels": {"aa": "INT: V31I, K156N; RT-p51: S162C, I329V, K431R; RT-p66: S162C, I329V, K431R, A554S; gp120: A3T, N52S, Y149N, I197L, T208S, K212T, I305L, T308A, Q316R, S418T, I424M; gp41: K77R, D109E, T133N, I135L, E151A, R218E, G235R, F304L, H331N; nef: A33V; p17: K26R, V46I, G62E, Q69K, E93D; p2: N9S; p24: E98D; p6: S25P, A39T, S50L; p7: T12P; rev: S5R, D11E, Q36R, A108T; tat: K19R, G83S; vif: I51V, K63R, A137S; vpr: G41N; vpu: Q2V, V14I, D78N"}}, "children": [{"name": "MG571982", "node_attrs": {"div": 0.21957000000000002, "accession": "MG571982", "clade_membership": {"value": "B"}, "country": {"value": "BR"}, "date": {"value": 2016.0}, "Strain_name": {"value": "HI2016_03"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G121T", "A133C", "C152A", "T156-", "G206A", "G215T", "A263G", "T307C", "A424G", "T426C", "A435T", "A470G", "A492T", "C516T", "A562G", "A566T", "A571T", "A578T", "G579A", "A584C", "G585A", "T586C", "A592G", "T593G", "G607A", "G608C", "A619G", "A655C", "A669C", "A689G", "A715C", "T718C", "T852G", "C872T", "C897T", "G908A", "T917C", "T936C", "T983C", "A1025T", "A1090G", "C1103G", "G1126A", "C1137A", "G1184A", "G1205A", "C1211A", "C1229T", "G1271A", "C1295A", "G1313A", "A1377T", "A1442G", "C1459G", "C1460T", "A1461G", "A1475-", "G1476-", "G1477-", "A1529G", "G1562A", "A1567G", "A1664G", "G1673A", "G1697A", "A1701T", "A1714C", "C1721T", "A1725G", "T1748A", "A1765G", "C1768A", 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"T4672A", "A4677G", "A4683G", "A4693G", "G4695A", "G4701A", "G4723A", "A4725C", "T4772C", "A4860G", "G4878A", "A4900G", "C4977G", "C4978G", "A4993C", "A5008G", "A5039T", "A5049G", "G5082A", "G5131A", "G5140A", "G5185A", "T5188A", "T5203C", "C5214A", "T5224G", "G5225C", "G5275A", "A5287C", "A5290G", "C5303A", "T5333C", "A5335T", "A5345G", "C5361-", "A5362-", "G5363-", "A5364-", "G5365-", "G5366-", "A5385C", "A5397C", "G5412T", "C5444A", "C5451T", "T5487C", "C5513G", "C5552A", "A5560C", "C5563G", "A5601G", "C5611A", "A5613C", "A5619G", "C5620A", "A5621C", "A5623G", "T5624C", "G5626A", "G5685A", "A5703G", "C5727T", "A5734C", "A5781T", "T5799-", "T5801-", "G5803-", "G5808-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819G", "-5820G", "-5821G", "-5822G", "-5823G", "C5826T", "A5828T", "C5851T", "C5867G", "A5911G", "C5916A", "A5947G", "G5954A", "A5955G", "T5964C", "T6024G", "A6031G", "T6046A", "C6052T", "C6097T", "C6110G", "G6121A", "C6145T", "A6152G", "T6154C", 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"A8457G", "A8469G", "G8476T", "G8479A", "C8590G", "T8594G", "A8597T", "T8666G", "C8684T", "A8739G", "A8762G", "C8768T", "T8770A", "T8786A", "C8796G", "G8846A", "T8864G", "G8875A", "T8883C", "A8885G", "T8915G", "C8948T", "A8954G", "G8955A", "C8960A", "T8966C", "G8968A", "T8972G", "T9029A"], "INT": ["D6S", "K7A", "S17N", "V32I", "I72V", "V151I"], "RT-p51": ["K122E", "D123N", "I142V", "T165I", "E169D", "I180V", "I202V", "Q207K", "P294T", "S322T", "Q334N", "G335D", "R356K", "A400T"], "RT-p66": ["K122E", "D123N", "I142V", "T165I", "E169D", "I180V", "I202V", "Q207K", "P294T", "S322T", "Q334N", "G335D", "R356K", "A400T", "T470M", "H483Y", "L491S", "K527Q", "V531I"], "gp120": ["Q5E", "T21N", "D34S", "V37A", "V57R", "N64K", "Q86E", "T100A", "D105-", "S109C", "T112A", "N132W", "S136Q", "K143R", "Y145H", "K150A", "V153I", "N158S", "D159S", "T161N", "S167N", "V172I", "T174K", "A196S", "K204Q", "E240G", "T255N", "E265I", "P285W", "A288T", "F289L", "H302Y", "K309H", "E311G", "N312R", "K315E", "R322N", "-326T", "Q335R", "P341L", "V344R", "G351R", "T360S", "Q361K", "S365G", "-368Y", "-370V", "-372H", "-373K", "-375E", "-376N", "-377G", "-379D", "-380N", "-381E", "-385T", "K404R", "R412A", "R416N", "L425I", "N433E", "N434S", "N435A", "E436P", "T437E", "T439I", "I468V"], "gp41": ["V2I", "M24L", "Q32L", "M54I", "E110K", "D129E", "L130E", "N133K", "E137A", "E148D", "N160D", "D163N", "N166Q", "I193L", "V197C", "Q199E", "P219L", "I222T", "A243P", "C253F", "V267L", "R276H", "A281I", "S293G", "Q294R", "A306F", "T307I", "V321T", "V322L", "G326F", "I329F"], "nef": ["-10R", "-11D", "S14A", "A15N", "V16I", "A23T", "G31R", "E38A", "K39E", "I43V", "S45I", "S46N", "A83G", "L85F", "D108E", "F143Y", "Q152E", "M168I", "D174E", "R178K", "F191L", "M194V", "L198M", "D205N", "C206*"], "p17": ["I34L", "T53S", "K76R", "Y79F", "V82I", "V84T", "Y86W", "R91N", "K95R", "E107A", "K112Q", "Q127P", "V128A"], "p2": ["T12S", "I13V"], "p24": ["S41A", "N120S", "I124M", "R132K", "L136M", "T216S"], "p6": ["T8S", "E12A", "R16G", "E29G", "P30Q", "I31T", "K33Q"], "p7": ["R3S", "G4-", "K34R"], "pro": ["T12P", "K20R", "M36I", "N37D", "R57K", "P63Q", "I64V", "E65D", "H69Y", "I72V"], "rev": ["L13I", "S30N", "S61T", "C85S", "V97L", "S99N", "I102V", "E111G", "T114A"], "tat": ["R7S", "K12N", "T23N", "S46C", "P59H", "S62R", "Q63E", "P84S", "S87Q"], "vif": ["R19K", "K22I", "M29K", "I31V", "K33G", "K36R", "V39I", "S46N", "T47P", "R92E", "V98I", "Q105R", "S130R", "P131G", "Q136P", "K141R", "T155A", "V166I", "G182D", "G185E"], "vpr": ["S28R", "P37Q", "H40Q", "N41H", "L67M", "R77L", "Q86-", "R87-", "S94R"], "vpu": ["V2I", "Q5T", "I6A", "I28L", "I43L", "E58D", "M67R", "D74L"]}, "labels": {"aa": "INT: D6S, K7A, S17N, V32I, I72V, V151I; RT-p51: K122E, D123N, I142V, T165I, E169D, I180V, I202V, Q207K, P294T, S322T, Q334N, G335D, R356K, A400T; RT-p66: K122E, D123N, I142V, T165I, E169D, I180V, I202V, Q207K, P294T, S322T, Q334N, G335D, R356K, A400T, T470M, H483Y, L491S, K527Q, V531I; gp120: Q5E, T21N, D34S, V37A, V57R, N64K, Q86E, T100A, D105-, S109C, T112A, N132W, S136Q, K143R, Y145H, K150A, V153I, N158S, D159S, T161N, S167N, V172I, T174K, A196S, K204Q, E240G, T255N, E265I, P285W, A288T, F289L, H302Y, K309H, E311G, N312R, K315E, R322N, -326T, Q335R, P341L, V344R, G351R, T360S, Q361K, S365G, -368Y, -370V, -372H, -373K, -375E, -376N, -377G, -379D, -380N, -381E, -385T, K404R, R412A, R416N, L425I, N433E, N434S, N435A, E436P, T437E, T439I, I468V; gp41: V2I, M24L, Q32L, M54I, E110K, D129E, L130E, N133K, E137A, E148D, N160D, D163N, N166Q, I193L, V197C, Q199E, P219L, I222T, A243P, C253F, V267L, R276H, A281I, S293G, Q294R, A306F, T307I, V321T, V322L, G326F, I329F; nef: -10R, -11D, S14A, A15N, V16I, A23T, G31R, E38A, K39E, I43V, S45I, S46N, A83G, L85F, D108E, F143Y, Q152E, M168I, D174E, R178K, F191L, M194V, L198M, D205N, C206*; p17: I34L, T53S, K76R, Y79F, V82I, V84T, Y86W, R91N, K95R, E107A, K112Q, Q127P, V128A; p2: T12S, I13V; p24: S41A, N120S, I124M, R132K, L136M, T216S; p6: T8S, E12A, R16G, E29G, P30Q, I31T, K33Q; p7: R3S, G4-, K34R; pro: T12P, K20R, M36I, N37D, R57K, P63Q, I64V, E65D, H69Y, I72V; rev: L13I, S30N, S61T, C85S, V97L, S99N, I102V, E111G, T114A; tat: R7S, K12N, T23N, S46C, P59H, S62R, Q63E, P84S, S87Q; vif: R19K, K22I, M29K, I31V, K33G, K36R, V39I, S46N, T47P, R92E, V98I, Q105R, S130R, P131G, Q136P, K141R, T155A, V166I, G182D, G185E; vpr: S28R, P37Q, H40Q, N41H, L67M, R77L, Q86-, R87-, S94R; vpu: V2I, Q5T, I6A, I28L, I43L, E58D, M67R, D74L"}}}, {"name": "KT427740", "node_attrs": {"div": 0.21956000000000003, "accession": "KT427740", "clade_membership": {"value": "B"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_PE019"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C151A", "T153C", "T163G", "T200C", "G224A", "A256-", "A369C", "A398G", "G407A", "A417C", "A499G", "G508A", "C516A", "C525T", "T570C", "T593C", "C603A", "A604T", "A605G", "T614C", "C623T", "C641T", "G644A", "G678A", "G693A", "G696A", "C707T", "G709A", "T718G", "T734C", "T749C", "G818A", "A903G", "A938G", "G987C", "T988C", "G989A", "T992G", "G1019A", "A1025C", "T1058C", "G1067A", "G1077A", "G1078C", "A1124G", "C1136T", "T1148C", "C1182T", "A1265C", "G1271T", "T1335C", "A1349G", "C1350A", "C1354G", "C1362T", "C1439T", "C1459A", "G1476A", "T1481C", "G1495A", "A1498G", "C1523T", "T1547G", "G1568A", "G1589A", "C1598T", "A1622G", "T1628G", "A1644C", "A1715G", "A1746G", "G1769A", "T1771A", "T1790C", "A1839G", "G1920A", "A1926G", "A1982G", "C1987T", "A2002G", "C2098T", "A2152G", "A2200G", "T2269C", "G2341A", "T2347G", "A2350G", "C2353T", "C2356T", "T2365G", "A2396G", "G2411A", "C2420T", "T2440C", "C2464A", "G2470A", "C2503T", "A2569G", "C2596T", "A2617G", "C2626G", "G2660A", "T2672C", "G2710A", "A2726C", "T2770C", "T2829A", "G2830A", "T2873C", "A2882G", "A2884G", "G2887A", "T2899C", "A2925G", "A2950G", "A2956G", "A2985T", "C3013T", "G3016A", "C3023T", "T3045C", "G3093A", "A3103G", "A3107T", "A3130T", "G3188A", "A3196G", "G3221T", "G3236A", "A3264G", "T3266C", "C3303T", "C3352T", "T3355C", "A3367G", "T3368C", "T3399C", "C3496T", "T3497C", "T3544C", "T3551C", "G3685A", "C3692G", "A3819T", "A3862G", "C3908A", "C3922T", "A3937G", "T3946C", "C3962T", "A3988G", "A4063C", "T4075C", "C4110G", "C4132T", "T4135C", "C4146A", "T4153C", "G4183A", "T4234C", "A4264G", "T4316C", "A4376G", "G4467A", "T4498C", "A4519G", "G4539A", "T4540G", "G4555A", "A4570C", "T4606G", "A4643C", "C4665T", "T4670C", "G4684A", "T4702C", "T4703C", "A4721C", "C4726A", "G4735A", "A4751G", "G4835A", "A4838G", "T4842G", "G4856A", "A4858G", "G4887A", "C4890T", "C4902T", "T4952A", "C4965G", "G4966A", "T4969G", "A4976C", "T4988A", "C5019T", "G5024A", "A5037G", "C5062A", "A5063T", "A5069T", "T5084C", "G5086A", "A5127G", "A5128G", "G5225A", "A5282T", "T5292C", "C5294T", "T5311C", "C5321T", "A5336C", "C5356T", "A5360G", "A5376C", "A5431G", "C5445A", "T5466C", "T5484C", "A5493G", "C5495A", "G5501C", "A5560G", "C5563A", "A5564C", "G5565A", "A5566G", "C5569A", "T5576G", "T5577C", "C5602T", "C5611G", "A5613T", "T5617A", "T5636C", "C5679T", "C5686A", "C5688A", "T5689A", "A5694G", "T5697C", "G5730A", "T5731A", "G5737A", "A5746G", "G5747T", "T5778C", "T5791G", "-5800G", "-5802G", "-5804A", "-5805G", "-5806A", "-5807T", "-5809G", "-5810G", "C5827G", "G5845A", "G5856A", "T5857A", "A5868C", "T5870C", "C5924T", "A6016G", "G6037A", "A6044G", "A6066G", "T6085G", "G6088A", "A6092G", "T6166C", "A6173-", "-6180T", "A6186C", "G6198A", "-6203A", "-6204C", "A6212G", "-6213A", "G6220A", "G6225A", "A6229G", "C6253A", "A6268C", "G6277A", "C6278A", "A6282T", "A6286C", "A6304G", "A6316G", "A6327C", "G6349A", "T6351C", "A6376C", "G6466A", "A6484C", "C6499T", "A6544G", "G6604A", "A6628G", "G6631T", "G6634C", "T6637C", "G6638A", "A6639C", "T6641A", "T6643A", "A6649T", "A6654C", "A6659G", "C6660T", "C6673T", "G6712A", "A6734C", "C6752A", "T6772C", "A6779G", "A6788G", "A6803G", "T6810A", "A6820G", "A6826C", "A6833-", "A6837G", "G6848A", "T6849G", "T6856G", "A6859G", "A6881G", "C6894G", "T6896G", "A6937G", "T6958-", "-6963A", "T6964A", "T6967A", "A6971C", "-6972T", "-6973G", "A6974G", "-6975A", "-6977G", "-6978A", "-6979T", "-6983A", "-6985T", "T6988A", "-6989A", "-6998A", "-6999C", "-7000A", "-7002G", "-7004A", "A7007-", "A7032G", "A7040G", "C7045T", "G7047A", "A7088C", "A7132G", "A7149G", "C7153A", "C7156T", "T7159C", "C7161G", "C7164G", "G7182C", "T7228C", "A7234G", "G7246A", "A7275G", "G7281T", "G7291A", "C7311G", "C7313A", "A7322G", "A7348G", "G7375A", "A7376G", "T7386C", "G7426A", "C7480T", "G7492A", "G7501A", "G7534A", "C7590G", "G7594A", "T7622A", "C7625G", "G7668A", "A7689G", "A7690T", "G7735A", "A7763C", "T7844C", "A7847G", "A7858G", "G7862A", "C7898A", "T7932C", "C7938T", "C7939T", "C7951A", "A7962G", "A8002G", "A8029C", "G8050A", "C8065T", "A8076G", "A8086C", "T8103C", "G8105A", "T8112C", "C8146T", "T8155C", "T8156C", "G8157T", "T8164C", "C8165A", "C8167T", "A8193G", "A8196C", "T8206C", "C8221T", "T8279G", "T8290C", "T8292G", "A8297G", "A8323T", "G8329A", "G8330A", "C8331G", "G8335A", "G8356T", "G8368T", "-8370G", "-8374G", "C8386T", "G8402A", "A8516T", "T8543A", "G8588A", "T8595G", "T8613A", "C8631A", "A8635G", "A8636G", "C8640A", "T8641A", "A8642C"], "INT": ["Y15F", "L45I", "E96D", "T112R", "T124N", "F181L", "I201V", "R231K", "S255K"], "RT-p51": ["K101E", "V106I", "D123E", "D177E", "V189I", "K211Q", "M245K", "K263E", "K277R", "E297V", "V317A", "G333E", "T338S", "V365I", "A376S", "V381I", "K390R", "T403I", "V435A"], "RT-p66": ["K101E", "V106I", "D123E", "D177E", "V189I", "K211Q", "M245K", "K263E", "K277R", "E297V", "V317A", "G333E", "T338S", "V365I", "A376S", "V381I", "K390R", "T403I", "V435A", "S468P", "L533V"], "gp120": ["S1K", "Q5P", "V57L", "N64D", "N71S", "H77Q", "I80V", "D105N", "S109V", "N111T", "S115N", "-116S", "-117T", "-118R", "-120E", "-121G", "-123K", "G124E", "K138N", "Q142K", "K143L", "E144D", "K150T", "N158T", "I166T", "Q259H", "E262T", "S263T", "E265N", "N267T", "T269V", "K294Q", "Q300K", "K309D", "N312D", "I317V", "I319K", "Q324H", "-326S", "N327-", "V332S", "N334K", "I343V", "T347S", "F348V", "N369-", "T371-", "T374-", "-379E", "-380T", "-381Q", "-382L", "-383D", "-384D", "-385W", "K393R", "I396V", "R398K", "R412Q", "R416K", "N432S", "N433K", "E436G", "T437S", "G443A", "K474R", "R476I"], "gp41": ["T3G", "L4I", "M7V", "M24I", "T25A", "V28A", "S107T", "L108V", "R122K", "D129G", "K154Q", "N166K", "I182V", "V187I", "Q199K", "L210P", "T212V", "E220G", "L242F", "H258R", "R261S", "V267A", "A268T", "I270T", "W285L", "L288I", "K297R", "N298T", "L330R", "I332V", "L340F", "A343S"], "nef": ["W5L", "S9I", "-10G", "-11G", "A15V", "M20I", "L85V", "L91I", "L97M", "E98G", "L100N"], "p1": ["I5L"], "p17": ["K12Q", "K28Q", "R30K", "E55G", "R58K", "L61M", "Y79H", "Q90M", "A115T", "A120T", "D121N", "S125N", "V128G"], "p2": ["T12N"], "p24": ["T58A", "V86P", "H87Q", "M96I", "G116T", "E180D", "P207T", "A208G"], "p6": ["T23A", "I31K"], "p7": ["G4S", "R10K", "K11R", "N27K"], "pro": ["K14R", "R41K", "K43R", "I62V"], "rev": ["R17Q", "F21A", "P31S", "I52V", "S61R", "A68T", "L73F", "S86N", "P100S", "L103P", "S106H", "P107S", "E116D"], "tat": ["R19G", "T40K", "G42A", "S62G", "Q63T", "T64A", "H65N", "V67G", "S75P", "P77F", "P81Q", "K85E"], "vif": ["V7G", "R19N", "H27Y", "K37E", "V39A", "E45D", "T47N", "R50K", "S86A", "K91R", "R92K", "D101N", "N122K", "R127D", "I128R", "D134E", "T151A", "T159N", "R167K", "K181G"], "vpr": ["Q8R", "I60L", "I63T", "R77H", "T84I", "N91H"], "vpu": ["L4I", "I7V", "V10A", "L27I", "L42I", "D44N", "R47V", "S62A", "D80N"]}, "labels": {"aa": "INT: Y15F, L45I, E96D, T112R, T124N, F181L, I201V, R231K, S255K; RT-p51: K101E, V106I, D123E, D177E, V189I, K211Q, M245K, K263E, K277R, E297V, V317A, G333E, T338S, V365I, A376S, V381I, K390R, T403I, V435A; RT-p66: K101E, V106I, D123E, D177E, V189I, K211Q, M245K, K263E, K277R, E297V, V317A, G333E, T338S, V365I, A376S, V381I, K390R, T403I, V435A, S468P, L533V; gp120: S1K, Q5P, V57L, N64D, N71S, H77Q, I80V, D105N, S109V, N111T, S115N, -116S, -117T, -118R, -120E, -121G, -123K, G124E, K138N, Q142K, K143L, E144D, K150T, N158T, I166T, Q259H, E262T, S263T, E265N, N267T, T269V, K294Q, Q300K, K309D, N312D, I317V, I319K, Q324H, -326S, N327-, V332S, N334K, I343V, T347S, F348V, N369-, T371-, T374-, -379E, -380T, -381Q, -382L, -383D, -384D, -385W, K393R, I396V, R398K, R412Q, R416K, N432S, N433K, E436G, T437S, G443A, K474R, R476I; gp41: T3G, L4I, M7V, M24I, T25A, V28A, S107T, L108V, R122K, D129G, K154Q, N166K, I182V, V187I, Q199K, L210P, T212V, E220G, L242F, H258R, R261S, V267A, A268T, I270T, W285L, L288I, K297R, N298T, L330R, I332V, L340F, A343S; nef: W5L, S9I, -10G, -11G, A15V, M20I, L85V, L91I, L97M, E98G, L100N; p1: I5L; p17: K12Q, K28Q, R30K, E55G, R58K, L61M, Y79H, Q90M, A115T, A120T, D121N, S125N, V128G; p2: T12N; p24: T58A, V86P, H87Q, M96I, G116T, E180D, P207T, A208G; p6: T23A, I31K; p7: G4S, R10K, K11R, N27K; pro: K14R, R41K, K43R, I62V; rev: R17Q, F21A, P31S, I52V, S61R, A68T, L73F, S86N, P100S, L103P, S106H, P107S, E116D; tat: R19G, T40K, G42A, S62G, Q63T, T64A, H65N, V67G, S75P, P77F, P81Q, K85E; vif: V7G, R19N, H27Y, K37E, V39A, E45D, T47N, R50K, S86A, K91R, R92K, D101N, N122K, R127D, I128R, D134E, T151A, T159N, R167K, K181G; vpr: Q8R, I60L, I63T, R77H, T84I, N91H; vpu: L4I, I7V, V10A, L27I, L42I, D44N, R47V, S62A, D80N"}}}]}, {"name": "B_NODE_0000023", "node_attrs": {"div": 0.16386, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G215A", "T534G", "C623T", "G644A", "G998A", "C1013T", "C1118T", "A1445G", "G1673A", "G1736A", "A1908G", "C2075A", "A2629G", "G3091A", "A3230G", "A3264G", "G3477A", "G3553A", "G3694A", "G3859A", "T3967C", "G4051A", "A4677G", "G4684A", "C4820A", "G5123A", "G5212A", "T5224G", "T5228C", "A5248C", "G5267A", "A5335G", "G5433A", "T5487C", "A5556G", "T5778C", "G5845A", "T5974C", "A6092G", "C6110G", "A6167G", "G6201C", "-6203A", "-6204G", "-6216T", "-6217G", "-6219A", "C6601T", "T6641A", "T6688-", "A6689-", "T6690-", "A6691-", "C6692-", "-6697A", "-6698C", "-6699A", "-6702T", "A6709G", "G6716A", "G6848A", "G6884A", "T6885C", "-6977G", "-6980G", "G7126A", "A7157C", "G7160A", "G7190A", "G7197A", "A7398T", "G7440A", "A7461G", "C7625T", "T7626A", "G7640A", "T7642C", "G7660A", "C7792T", "G7937A", "G8181T", "C8223T", "A8276G", "T8277C", "T8279G", "G8342A", "T8369G", "G8453A", "C8640T", "G8795-", "G8936A"], "RT-p51": ["I178M", "S379G", "K390R"], "RT-p66": ["I178M", "S379G", "K390R", "R461K"], "gp120": ["I80V", "Q86E", "-122E", "S263T", "A288T", "I319T", "V332I", "V344T", "D446N", "R448K"], "gp41": ["Q32L", "R46K", "H53R", "L108Y", "D113N", "N157S", "S293I", "T307I", "I325A"], "p17": ["S67A"], "pro": ["N37S", "L93I"], "rev": ["K14R", "S30N", "E111D"], "tat": ["A58P"], "vif": ["I31V", "D78E", "S130R"], "vpr": ["D7N", "H40Q", "A55T"], "vpu": ["E66D", "D80N"]}, "labels": {"aa": "RT-p51: I178M, S379G, K390R; RT-p66: I178M, S379G, K390R, R461K; gp120: I80V, Q86E, -122E, S263T, A288T, I319T, V332I, V344T, D446N, R448K; gp41: Q32L, R46K, H53R, L108Y, D113N, N157S, S293I, T307I, I325A; p17: S67A; pro: N37S, L93I; rev: K14R, S30N, E111D; tat: A58P; vif: I31V, D78E, S130R; vpr: D7N, H40Q, A55T; vpu: E66D, D80N"}}, "children": [{"name": "KT427754", "node_attrs": {"div": 0.2102, "accession": "KT427754", "clade_membership": {"value": "B"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_RJ100"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T156-", "A216G", "G265A", "A305T", "G379C", "G395A", "A423C", "A440T", "G481C", "T485G", "G491A", "A500G", "G615A", "C626T", "T636C", "A692C", "C707T", "C713T", "G740A", "C771T", "A774C", "G818A", "C823G", "G829A", "C845T", "T851C", "C890T", "C893T", "C897T", "T983C", "T1037C", "A1173G", "C1174T", "A1199G", "G1205A", "T1244C", "T1263A", "G1268A", "G1313A", "C1316T", "G1328A", "A1346G", "A1349C", "C1350A", "C1354G", "G1394A", "T1421C", "G1443T", "T1452A", "G1455A", "C1456A", "A1464C", "C1478T", "G1499A", "C1501T", "A1543G", "A1566C", "G1589A", "T1613C", "T1628C", "A1664G", "T1676C", "G1687A", "A1743G", "C1744T", "C1768A", "T1792C", "T1796C", "A1804G", "C1828T", "A1835G", "G1840A", "G1849A", "A1861G", "A1867C", "G1906A", "A1939T", "G1968A", "A2002G", "T2005G", "T2011C", "G2173A", "T2236C", "C2263T", "A2329G", "G2341A", "A2368G", "C2386T", "C2420T", "A2557G", "G2624A", "G2656A", "C2671T", "G2683A", "A2698G", "T2723C", "A2727G", "A2743C", "A2764G", "C2776T", "A2828C", "T2829A", "A2842G", "C2863T", "G2872A", "G2878A", "C2909G", "G2946A", "G2947A", "G2948A", "A2951G", "C2953T", "A2956G", "C2978T", "A2980G", "C3002T", "C3055T", "A3096T", "A3116G", "A3136G", "G3154A", "G3168A", "G3169A", "C3178T", "T3181C", "G3236A", "A3238C", "G3245A", "C3247G", "C3303T", "A3304G", "G3334A", "G3340A", "G3385A", "G3427A", "A3454G", "A3505G", "C3508T", "G3527A", "T3544A", "C3545A", "T3551C", "T3566C", "T3628C", "A3630G", "G3643A", "G3651A", "T3757C", "C3763T", "G3796A", "A3808G", "G3814A", "A3868G", "G3907A", "A3923C", "G3925A", "A3934G", "A4076C", "T4079C", "A4130G", "C4140T", "C4146A", "G4148A", "G4150A", "C4321T", "A4375C", "A4399C", "T4426C", "T4450C", "G4464A", "T4471C", "C4543A", "G4581A", "T4585C", "A4622G", "A4644G", "A4652C", "T4679C", "G4689A", "A4692G", "A4696G", "T4769A", "A4774G", "A4782G", "C4841T", "A4857C", "A4858G", "A4888G", "A4900G", "T4914C", "A5049G", "C5062G", "T5102C", "T5171C", "G5176A", "T5194A", "A5200G", "C5213A", "C5227T", "A5230G", "T5239C", "A5247G", "T5314C", "A5330C", "G5359C", "G5370A", "C5445T", "T5457C", "G5463A", "C5478T", "T5492C", "C5508A", "C5548T", "C5563G", "C5567T", "C5581T", "C5620G", "A5621T", "G5626A", "G5629T", "G5644A", "G5685A", "T5689A", "A5781G", "A5790G", "A5796C", "-5800G", "-5802T", "-5804A", "-5805T", "-5806A", "-5807T", "-5809G", "-5810G", "C5826T", "C5827G", "G5842A", "T5860C", "G5861A", "C5862A", "A5866G", "C5884A", "A5907G", "C5956A", "G6020A", "G6079A", "A6142G", "A6159T", "C6165A", "T6166G", "A6173-", "A6177G", "-6180T", "A6182G", "C6183A", "A6186G", "T6187C", "T6199C", "T6205C", "-6210T", "-6213C", "-6215A", "G6220-", "A6221-", "G6224-", "G6225-", "A6228G", "A6232G", "A6234C", "C6241T", "A6257T", "G6261A", "C6262A", "G6266A", "A6269G", "G6277A", "T6295A", "A6304T", "C6305T", "T6306C", "A6330G", "T6331G", "A6333C", "T6334A", "A6335-", "C6336-", "A6337-", "T6351G", "T6355C", "C6361T", "T6395A", "C6412T", "A6481T", "A6532T", "G6547A", "C6632T", "A6646G", "T6658C", "A6664G", "A6682C", "A6686-", "G6687-", "-6692G", "A6693G", "-6700T", "-6701A", "A6706G", "G6712A", "C6717T", "A6748C", "A6785G", "T6787A", "C6790A", "A6797G", "C6800A", "G6802A", "A6803G", "T6810G", "A6811T", "T6828A", "-6834T", "-6835T", "C6850T", "A6932T", "A6937G", "T6946C", "T6958-", "A6959-", "A6960-", "T6961-", "G6962-", "T6964-", "A6965C", "-6968T", "A6969G", "-6972A", "-6973C", "-6975G", "-6978C", "-6979T", "-6989G", "-6990A", "-6991G", "-6993G", "-6997T", "-6998A", "-6999G", "-7000T", "-7002C", "-7004A", "A7007-", "A7032G", "T7039C", "G7048A", "A7095C", "T7105C", "A7152C", "T7159G", "G7162C", "C7165G", "C7170T", "C7174T", "T7180G", "A7256G", "A7275G", "A7297C", "G7309A", "G7310A", "A7463C", "A7589T", "A7604G", "A7627C", "G7628A", "G7630T", "G7657A", "G7688A", "A7689G", "A7690C", "C7702T", "A7714C", "C7742A", "A7782G", "A7799C", "A7818G", "A7820C", "C7921G", "C7941A", "G8007A", "C8009A", "C8065T", "C8077T", "G8105A", "A8143G", "A8152G", "G8204A", "T8209C", "C8213T", "C8221A", "A8230C", "T8265C", "T8290C", "C8293T", "A8323T", "G8328T", "G8329A", "G8354A", "C8364T", "G8372-", "T8375-", "C8386A", "G8409A", "A8425C", "A8469C", "G8487T", "G8490A", "T8495C", "T8505G", "G8506T", "G8528A", "A8530G", "G8534A", "G8561A", "C8590G", "T8594G", "A8622C", "T8646C", "G8654A", "T8666C", "C8687T", "C8688A", "T8740C", "C8771T", "T8786C", "-8795T", "A8812C", "C8868T", "A8870G", "T8883C", "A8885G", "G8888A", "T8918A", "C8921T", "G8924A", "T8972G", "T9014G"], "INT": ["M50L", "I101L", "S119G", "T122I", "T124N", "A125T", "S230N", "D256E", "R269K", "S283G"], "RT-p51": ["D177N", "K211R", "M245Q", "P272A", "R284K", "G285R", "T286A", "Q334L", "I341V", "R358K", "V381I", "G384R", "T403M"], "RT-p66": ["D177N", "K211R", "M245Q", "P272A", "R284K", "G285R", "T286A", "Q334L", "I341V", "R358K", "V381I", "G384R", "T403M", "E478K", "H483Q", "L484I", "K512R", "S519N"], "gp120": ["A3K", "Q5P", "K18R", "D34E", "V56I", "N102I", "T104K", "-106S", "-107V", "N108D", "T112S", "S115L", "-116V", "-117E", "-118G", "-120T", "-121M", "-123G", "G124M", "E125T", "I126-", "K127-", "T135S", "S136K", "K138R", "N139D", "K150N", "L151S", "D159G", "N160T", "T161-", "I166R", "S181T", "R276S", "S278G", "T288I", "A291T", "T292E", "G293R", "K294I", "N312K", "K315E", "Q316K", "I317V", "T319S", "F325Y", "-326I", "T360S", "-368P", "-370E", "T371S", "-372D", "-373S", "-375N", "N378-", "K393R", "R412K", "Q414P", "N433T", "N435Q", "E436T", "T439I", "I468V", "K474R", "E481D"], "gp41": ["M54L", "D109N", "M118I", "D129S", "E137D", "Q147K", "N160S", "N166Q", "K172R", "I173L", "F206L", "P213Q", "G235K", "A268T", "V301I", "V321A", "L340F", "R342I"], "nef": ["R8C", "S9R", "A15D", "A23T", "D28A", "I43L", "A49S", "A50T", "C55V", "E62Q", "A83G", "K94Q", "Y102H", "H116N", "V133T", "E151D", "N157T", "P176S", "M182I", "H192Q", "M194V", "L198I"], "p17": ["R15T", "R30Q", "G49A", "V94I"], "p2": ["V7L", "S10T", "A11N", "M14L"], "p24": ["P14S", "I15L", "A31G", "S33N", "T148V", "S178T", "P207T", "A208G"], "p6": ["S3N", "T22V", "P30Q", "L38S", "K42R", "S50L"], "p7": ["T12I", "K26R", "K34Q"], "pro": ["I13V", "M36I", "R57K", "H69Q"], "rev": ["L18F", "L73F", "P77S", "S86N", "S99G", "I102V"], "tat": ["P58S", "Q63E", "T64I"], "vif": ["T20A", "K22N", "A35T", "K36E", "K37G", "D61E", "K63R", "I66V", "K91R", "D101G", "Q105R", "Y110H", "T155A", "T159R"], "vpr": ["P37T", "E48G", "R85P", "A89T"], "vpu": ["Q5V", "A8S", "V13I", "V79I"]}, "labels": {"aa": "INT: M50L, I101L, S119G, T122I, T124N, A125T, S230N, D256E, R269K, S283G; RT-p51: D177N, K211R, M245Q, P272A, R284K, G285R, T286A, Q334L, I341V, R358K, V381I, G384R, T403M; RT-p66: D177N, K211R, M245Q, P272A, R284K, G285R, T286A, Q334L, I341V, R358K, V381I, G384R, T403M, E478K, H483Q, L484I, K512R, S519N; gp120: A3K, Q5P, K18R, D34E, V56I, N102I, T104K, -106S, -107V, N108D, T112S, S115L, -116V, -117E, -118G, -120T, -121M, -123G, G124M, E125T, I126-, K127-, T135S, S136K, K138R, N139D, K150N, L151S, D159G, N160T, T161-, I166R, S181T, R276S, S278G, T288I, A291T, T292E, G293R, K294I, N312K, K315E, Q316K, I317V, T319S, F325Y, -326I, T360S, -368P, -370E, T371S, -372D, -373S, -375N, N378-, K393R, R412K, Q414P, N433T, N435Q, E436T, T439I, I468V, K474R, E481D; gp41: M54L, D109N, M118I, D129S, E137D, Q147K, N160S, N166Q, K172R, I173L, F206L, P213Q, G235K, A268T, V301I, V321A, L340F, R342I; nef: R8C, S9R, A15D, A23T, D28A, I43L, A49S, A50T, C55V, E62Q, A83G, K94Q, Y102H, H116N, V133T, E151D, N157T, P176S, M182I, H192Q, M194V, L198I; p17: R15T, R30Q, G49A, V94I; p2: V7L, S10T, A11N, M14L; p24: P14S, I15L, A31G, S33N, T148V, S178T, P207T, A208G; p6: S3N, T22V, P30Q, L38S, K42R, S50L; p7: T12I, K26R, K34Q; pro: I13V, M36I, R57K, H69Q; rev: L18F, L73F, P77S, S86N, S99G, I102V; tat: P58S, Q63E, T64I; vif: T20A, K22N, A35T, K36E, K37G, D61E, K63R, I66V, K91R, D101G, Q105R, Y110H, T155A, T159R; vpr: P37T, E48G, R85P, A89T; vpu: Q5V, A8S, V13I, V79I"}}}, {"name": "JN692451", "node_attrs": {"div": 0.21369, "accession": "JN692451", "clade_membership": {"value": "B"}, "country": {"value": "BR"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04BR1049"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T200G", "T201C", "A217G", "T228A", "G317A", "A369C", "T377C", "G379A", "A386G", "A399C", "A417C", "T473C", "T476C", "A492T", "T495G", "C516T", "G520A", "C540A", "A562G", "G585A", "T586C", "A605G", "G607A", "A666G", "G671T", "G677A", "C688T", "G693A", "G696A", "G709T", "G712A", "C719T", "C722T", "G743A", "C771G", "T824C", "C827T", "A839G", "T917C", "C926T", "A941G", "A968G", "T978A", "G980A", "T1055C", "T1064G", "A1074G", "A1090G", "A1124G", "C1136A", "G1139A", "A1361C", "G1397A", "A1400G", "C1406A", "A1418G", "A1449G", "A1450G", "T1452C", "C1453A", "C1459A", "G1503A", "A1529G", "G1562A", "A1614T", "G1619A", "C1658G", "A1670G", "T1679C", "A1714C", "T1752C", "G1760A", "T1790C", "A1832C", "A1839G", "A1841G", "G1845A", "A1903C", "G1920A", "A1963G", "A1966T", "C1985G", "C1987T", "C1996T", "T2024C", "C2080T", "A2170G", "A2286G", "T2335C", "T2383C", "C2451T", "C2452A", "G2456C", "A2459G", "G2518A", "A2578G", "C2626A", "T2672C", "G2722A", "A2925G", "C2942A", "C2960T", "A2985C", "G2995A", "A3043G", "G3046A", "T3059A", "A3070G", "A3115G", "G3127A", "G3142A", "A3190T", "G3221A", "A3280G", "G3293A", "A3388G", "G3398A", "A3447G", "T3449C", "C3500A", "A3511C", "A3514T", "G3529A", "A3539G", "A3562G", "T3613C", "C3649T", "T3668C", "A3724G", "G3755T", "A3761G", "C3763A", "A3808T", "G3825C", "C3843T", "C3857A", "G3884A", "A3890T", "T3943C", "A4036G", "A4076G", "T4126C", "A4130C", "G4131C", "C4132T", "T4192C", "A4225T", "A4243T", "A4246G", "G4267A", "A4376G", "T4471G", "T4498C", "G4573A", "G4631A", "A4643G", "A4697C", "G4701A", "G4708A", "A4721C", "G4735A", "A4785G", "T4832G", "C4883T", "A4937C", "A4950C", "A4956T", "T4967C", "T4988A", "A5005G", "A5015G", "A5061G", "G5086A", "G5093A", "C5115T", "G5143A", "C5145T", "A5159G", "A5161G", "A5173G", "T5203C", "A5278G", "T5293A", "C5300A", "A5302C", "G5305A", "T5313C", "A5336T", "A5345G", "A5376G", "G5396A", "C5444A", "A5461C", "A5533C", "A5558G", "A5566G", "T5576G", "T5577A", "T5578C", "A5594G", "G5599T", "C5602T", "A5607G", "A5623G", "T5627C", "T5651C", "T5697C", "A5712G", "G5737A", "A5738C", "A5742G", "A5748T", "T5799-", "T5801-", "G5803-", "G5808-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5827A", "G5853A", "A5866T", "A5935C", "A5959G", "T5964C", "G6029A", "A6030C", "G6037A", "T6046G", "A6065G", "A6073G", "T6085G", "T6134C", "T6160C", 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gp120: E4D, V37A, E59T, N64K, N71D, H77Q, -106F, S109T, S114N, -116T, -117A, -123A, I133V, T135A, K138D, N139K, Q142R, E144D, Y149N, N160S, S167N, V180I, T216I, V227M, S236T, I242V, F249I, T250S, N251D, A253V, H280-, I281-, -282Q, -283L, G284V, P285G, F289L, D297E, K307A, E311T, T313A, K315N, I317T, A318V, N327-, -328N, N334T, Q361P, -368H, -370S, -372E, -373G, T374L, -375K, -376G, -377E, P389Q, A408N, Q414L, T427M, N432G, N433P, E436R, I468L, K472R; gp41: T3G, L4I, S23A, M24V, K77M, T94P, S96T, A101T, D109Q, E110A, R122K, D129E, T133S, I135L, D163S, R214G, D217E, E223A, I266V, V267A, A281T, W285L, F304L, A306F, E320A, I329F, H331N; nef: S9M, -10E, -11S, S14F, D28E, E38A, K39E, H40R, S45T, A50S, T51N, D54A, L91I, E98D, V133I, Y135F, E151-, Q152-, V153-, E154-, K155-, A156-, N161D, N162M, R178G, R196K, L198K; p1: H9Q; p17: K12Q, R15K, K28Q, R30K, T53S, S54A, G62E, Q69K, K76R, V84T, R91K, S111G, K112N, A118V, A120T, D121N, S125I, S126N; p2: N9G, S10Q, T12N; p24: P14A, L83I, I115V, N120S; p6: E12A, S25P; p7: V13I, T50S; pro: T12P, K14R, I15V, G16E, E35D, R41K, P63A; rev: T15A, F21D, E32G, Q36K, Q53R, K54T, D84G, S99N, L103S, P107S, A108T, E116K; tat: R7K, T23N, K29Q, T39I, D61G, T64A, V67G, S68P, T82K; vif: K37D, V39I, R41K, E45D, R50K, T67A, E117D, N122H, I124L, D134E, N140S, T159A, R167K, P177S, S186N, H187Y, H192R; vpr: A4V, P14L, T19A, E48D, Q66N, I70T, N91D; vpu: I6V, I7A, V15A, I28L, D44T, R47S, D74N"}}}]}]}]}]}]}]}]}, {"name": "B_NODE_0000024", "node_attrs": {"div": 0.13994, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T213A", "A214G", "A1160G", "A1804G", "G3154A", "T3436C", "G3631A", "T4919C", "A5677T", "-6219A", "G6232A", "A6260G", "G6535A", "A7549G", "G7868A", "A8043T", "T8215C", "T8495C"], "gp120": ["A3T", "M126I", "T308A"], "gp41": ["A189T", "D247V"], "p6": ["K42R"], "rev": ["D11E"], "vif": ["G101N"], "vpr": ["S28N"], "vpu": ["T24S"]}, "labels": {"aa": "gp120: A3T, M126I, T308A; gp41: A189T, D247V; p6: K42R; rev: D11E; vif: 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"-5804A", "-5807T", "A5861T", "A5866T", "C6115T", "-6175A", "-6180A", "A6185G", "-6207G", "-6212A", "-6214A", "-6216T", "T6276G", "G6314A", "C6336A", "G6339C", "G6345T", "A6589G", "A6622T", "A6682G", "C6807T", "A6810C", "A6823G", "T6835G", "T6961C", "A6962-", "G6963-", "T6964-", "A6965-", "C6966-", "T6967-", "-6975C", "-6977G", "-6983T", "-6985A", "-6995G", "-6996A", "-6997A", "-6998G", "-6999G", "-7000A", "-7001A", "-7002A", "-7004G", "-7005G", "-7006C", "-7009A", "C7020A", "T7114C", "G7162T", "G7176T", "G7198A", "G7332T", "G7426A", "G7440A", "G7519A", "A7553C", "T7561A", "G7640A", "C7701A", "G7846A", "A7847G", "T7913A", "T7921A", "A7929C", "T7932G", "C7941A", "C8004T", "G8007A", "G8018A", "T8020C", "A8029G", "G8105T", "T8197G", "C8218T", "A8230T", "A8236C", "G8242A", "T8265C", "A8311C", "T8321G", "T8322C", "C8336A", "-8370G", "-8371G", "A8494C", "T8558C", "A8663G", "G8682A"], "INT": ["M50I", "I72V", "I101L", "A265V"], "RT-p51": ["E6D", "R83K", "T200A", "Q207K", "K211A", "G359S", "T400A"], "RT-p66": ["E6D", "R83K", "T200A", "Q207K", "K211A", "G359S", "T400A", "K451R", "R461K", "V466A", "Q480H"], "gp120": ["E4D", "-107K", "S114-", "T161N", "S162T", "A318V", "K319A", "-328N", "T371-", "-374T", "-381E", "-382G", "D384G", "P389Q", "R416N", "E436D", "R441T"], "gp41": ["G10V", "G20S", "I84L", "D113N", "D129G", "T133N", "I135L", "I182V", "L204I", "S234F", "D239N", "N298K", "V321A"], "nef": ["-10G", "P14S", "N51T", "V114I"], "p17": ["R4S", "A5R", "L8F", "R15E", "V46I", "R58K", "Q65H", "T84V", "K91R", "E93K", "K95A"], "p2": ["T8N", "T12-"], "p24": ["I91V"], "p6": ["E19G", "T23A", "L35A"], "p7": ["R3K", "K26R", "K34R"], "pro": ["I62V"], "rev": ["F21L", "P31S", "P67S", "*117E"], "tat": ["A21P", "T39M", "P59S", "T74P", "S75A"], "vif": ["K33G", "K36R", "R41K", "I66V", "K91T", "S118T", "I128R", "K141Q"], "vpr": ["V37I", "Y45H", "Q77R", "R85Q"]}, "labels": {"aa": "INT: M50I, I72V, I101L, A265V; RT-p51: E6D, R83K, T200A, Q207K, K211A, G359S, T400A; RT-p66: E6D, R83K, T200A, Q207K, K211A, G359S, T400A, K451R, R461K, V466A, Q480H; gp120: E4D, -107K, S114-, T161N, S162T, A318V, K319A, -328N, T371-, -374T, -381E, -382G, D384G, P389Q, R416N, E436D, R441T; gp41: G10V, G20S, I84L, D113N, D129G, T133N, I135L, I182V, L204I, S234F, D239N, N298K, V321A; nef: -10G, P14S, N51T, V114I; p17: R4S, A5R, L8F, R15E, V46I, R58K, Q65H, T84V, K91R, E93K, K95A; p2: T8N, T12-; p24: I91V; p6: E19G, T23A, L35A; p7: R3K, K26R, K34R; pro: I62V; rev: F21L, P31S, P67S, *117E; tat: A21P, T39M, P59S, T74P, S75A; vif: K33G, K36R, R41K, I66V, K91T, S118T, I128R, K141Q; vpr: V37I, Y45H, Q77R, R85Q"}}, "children": [{"name": "KP411823", "node_attrs": {"div": 0.22911000000000004, "accession": "KP411823", "clade_membership": {"value": "B"}, "country": {"value": "SE"}, "date": {"value": 2010.0}, "Strain_name": {"value": "SE600012"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T358A", "C435A", "G471C", "C516T", "A533G", "A557G", "A638G", "A643G", "A676G", "G740A", "G748A", "A840G", "G944A", "T978C", "T1052C", "T1064C", "A1089C", "A1115G", "A1147C", "G1159A", "G1168T", "C1169G", "G1313A", "T1335C", "C1354G", "A1400G", "C1406A", "A1418G", "T1457G", "A1488G", "A1489G", "C1500T", "C1501T", "T1502G", "A1595G", "A1664G", "G1687C", "A1743G", "C1752T", "C1767-", "C1768-", "G1769-", "T1771C", "A1834C", "A1855G", "A1857G", "A1867G", "A1907G", "G2027A", "A2131G", "T2206C", "T2443C", "A2560G", "C2584T", "C2626A", "A2629G", "G2682A", "G2686T", "T2737C", "C2831T", "C2835A", "A2836G", "G2837A", "G2972A", "T3045C", "G3046A", "A3096T", "A3103G", "A3154G", "G3162A", "C3232T", "G3307A", "A3454G", "C3500A", "G3651A", "G3685A", "A3808T", "G3814A", "G3836A", "C3856T", "G3984A", "G4060A", "C4078T", "C4132A", "A4285G", "C4501T", "G4516A", "G4649C", "T4655G", "A4677G", "G4701T", "A4720G", "G4735A", "C4754T", "C4759A", "C4800T", "A4806T", "A4814G", "A4874C", "A4877C", "G4878A", "A4888C", "C4889A", "G4913A", "A4915T", "A4938G", "T4952G", "T4959G", "G5037A", "C5051T", "A5059G", "A5150C", "T5152G", "G5199A", "T5203C", "A5233G", "G5305A", "A5362-", "G5363-", "A5364-", "G5365-", "G5366-", "A5367-", "A5385C", "C5398T", "T5466C", "T5576A", "T5600C", "C5614T", "C5654T", "C5688T", "G5718A", "A5733G", "G5755A", "A5784G", "A5787T", "T5788C", "T5789A", "T5791G", "C5792G", "G5794A", "C5795G", "C5797A", "-5800G", "G5802C", "-5805G", "-5806C", "G5808C", "-5809T", "-5810T", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5824A", "C5862T", "A5935C", "A5938T", "A6076C", "A6157G", "C6163T", "-6171T", "T6172G", "A6174G", "G6179A", "T6187G", "C6189G", "A6194G", "G6195A", "G6201C", "T6202C", "-6203A", "-6204G", "-6205T", "A6206G", "-6215C", "A6219G", "G6225A", "A6226C", "G6227A", "A6229G", "G6260A", "T6264G", "G6274A", "A6275T", "A6281C", "A6304G", "A6316G", "A6333C", "T6345C", "C6361T", "G6425A", "G6430A", "A6443C", "C6483T", "C6496T", "A6508G", "G6604A", "A6605G", "G6611A", "C6612T", "T6658C", "A6684G", "A6691C", "A6693G", "T6696A", "-6697C", "-6698C", "-6699A", "-6700T", "-6701A", "-6702G", "T6722C", "G6725A", "A6734G", "T6735A", "A6742G", "G6743A", "A6859C", "A6886G", "A6960T", "-6978G", "-6979A", "-6980G", "-6981G", "-6982G", "-6984T", "G7026A", "A7037T", "G7054T", "A7063G", "A7096G", "G7101C", "A7148G", "A7154G", "A7155G", "T7159C", "T7162C", "G7168T", "C7171T", "T7176C", "A7186G", "G7197A", "A7210T", "T7220G", "A7230G", "G7235A", "A7238G", "A7239G", "T7243A", "A7245C", "T7250C", "G7253C", "G7254C", "G7278C", "G7283T", "G7286T", "A7297T", "G7309T", "G7319T", "A7322G", "G7333C", "T7337C", "G7341T", "A7345G", "G7361T", "G7362C", "C7363T", "G7367A", "C7368T", "C7379A", "G7385C", "G7390A", "C7393T", "A7394C", "G7395A", "C7397G", "T7403C", "C7407A", "G7410T", "T7411G", "T7413C", "A7414C", "T7416A", "A7419G", "C7421A", "A7422T", "C7429A", "G7517A", "A7523G", "G7552A", "C7582T", "C7605T", "G7631A", "T7656G", "A7668G", "G7712A", "A7713C", "C7939T", "C7950T", "G7965C", "A7966T", "A7967T", "T7968G", "C7969G", "A7972C", "G7976A", "G7980C", "G7989A", "G7991T", "A7992G", "A7998G", "A8000C", "G8001A", "A8002C", "A8006C", "C8009A", "T8013G", "A8014C", "G8021C", "A8023T", "T8024A", "C8026T", "T8027A", "A8032C", "C8038T", "T8043G", "G8045A", "C8047T", "C8051T", "A8054G", "G8059T", "T8060C", "G8061T", "C8062G", "C8065G", "T8066A", "A8069C", "G8070A", "C8071G", "A8073T", "A8076T", "C8077T", "G8079T", "T8081C", "A8084C", "G8087C", "A8088C", "T8090C", "C8093A", "C8095T", "T8096A", "T8097G", "G8102T", "T8105C", "C8106T", "A8108G", "G8114T", "C8120A", "C8123T", "G8125T", "G8127A", "G8130C", "A8132G", "T8138G", "G8141A", "G8144C", "T8145C", "C8147T", "C8149A", "T8153A", "T8156G", "G8157C", "G8158C", "C8165T", "A8172C", "G8178T", "A8180G", "G8181T", "A8184C", "A8191T", "G8194T", "A8195C", "A8198G", "G8204A", "T8205A", "A8207G", "G8208A", "C8209G", "T8210G", "G8212T", "G8219T", "C8220G", "A8222C", "A8224C", "C8226T", "T8229A", "A8233C", "G8234A", "T8235C", "C8238G", "G8243A", "G8245C", "A8248C", "A8250G", "T8256G", "G8264A", "A8266C", "G8267T", "A8269T", "G8276A", "T8278C", "G8283A", "G8285A", "C8286G", "C8291T", "C8293T", "C8296A", "A8299T", "C8301T", "A8303T", "G8304C", "A8305C", "A8306C", "G8307A", "C8311T", "G8313C", "A8314C", "A8316C", "G8323C", "G8324A", "G8328A", "C8331G", "T8334G", "A8336G", "G8342A", "T8348G", "G8349C", "G8350A", "C8351A", "T8358G", "C8359T", "A8363T", "T8369G", "-8373C", "-8374T", "A8378G", "C8383G", "T8384G", "G8385A", "C8386A", "T8387A", "T8389A", "G8398A", "G8404A", "C8406A", "G8407A", "G8409C", "T8411G", "G8414C", "G8418C", "A8420G", "G8421C", "T8426G", "T8431G", "G8436C", "G8439C", "A8441T", "C8443T", "C8445G", "A8447G", "A8449C", "T8452G", "A8459C", "T8462G", "G8466C", "A8468C", "A8469T", "A8472C", "G8476T", "G8479C", "A8482T", "A8484C", "A8486G", "G8487C", "C8491T", "A8503T", "T8505G", "G8508C", "T8511G", "A8516G", "G8520A", "A8522C", "A8524C", "A8527G", "G8531A", "A8533G", "T8539G", "G8550T", "A8553G", "A8555C", "C8557T", "A8560G", "A8564C", "T8567C", "A8571G", "A8573C", "T8578A", "C8590G", "T8594G", "T8595G", "C8640A", "A8642G", "A8656G", "A8660G", "C8699A", "C8720G", "C8723T", "G8738A", "T8740A", "C8741T", "A8746T", "C8775T", "G8789C", "C8790A", "G8807A", "C8812G", "G8817A", "G8818A", "A8819G", "A8824C", "T8829A", "G8830A", "G8834T", "C8838G", "A8839C", "A8844G", "C8850A", "A8851T", "G8858A", "A8874G", "A8886C", "T8887A", "A8912G", "T8915C", "G8922A", "C8928A", "G8929A", "C8934G", "A8947T", "C8948T", "G8955A", "T8966C", "G8968A", "C8975T", "T9029G"], "INT": ["E11D", "A21T", "G70E", "S119R"], "RT-p51": ["D177E", "I178M", "G196E", "Q197H", "P247Q", "E248K", "V293I", "V317A", "Q334L", "R356K"], "RT-p66": ["D177E", "I178M", "G196E", "Q197H", "P247Q", "E248K", "V293I", "V317A", "Q334L", "R356K", "L469I", "S519N"], "gp120": ["T3L", "E74D", "-106L", "K107R", "N111E", "T112S", "-114D", "-115T", "-116T", "-117S", "-118G", "-119M", "-120I", "-121L", "E122G", "G124D", "E125K", "I137R", "M141W", "K143Q", "L147F", "V154M", "N160T", "A191T", "I197L", "P210L", "N251D", "A253I", "K277R", "H280R", "I281N", "-282H", "-283R", "Y290H", "A291T", "D294E", "D297N", "N327K", "Q335H", "N369I", "-375G", "-376G", "-377L", "R391K", "I395F", "Q400H", "N416T", "N433P", "N434G", "E438D", "R448K", "R452S", "Y456D", "K459R", "V461I", "K462G", "E464A", "G467P", "R475T", "V477L", "V478L", "E481D"], "gp41": ["A6S", "M7V", "G13V", "A22M", "L26M", "V28L", "R31Q", "Q32E", "S35Y", "G36V", "I37T", "V38E", "Q39R", "Q40M", "N42K", "R46K", "V72I", "R74G", "A101V", "E110K", "M118R", "K122R", "E137T", "F206L", "H209P", "L210R", "P213Q", "P216L", "G221A", "I222W", "E223D", "E225K", "G226A", "R229K", "D230C", "D232G", "R233H", "S235H", "L237C", "G240R", "F241I", "L242M", "V247G", "D248N", "R250W", "S251G", "C253L", "F255I", "S256Q", "Y257F", "H258L", "R259L", "D262P", "L264I", "L265R", "V267L", "A268L", "R269G", "V271L", "L273I", "L274F", "G275E", "R276P", "R277G", "W279G", "E280K", "A281P", "Y284N", "W285A", "L288F", "Q290P", "W292L", "S293V", "Q294P", "K297N", "K298Q", "S299G", "V301N", "S302E", "L303V", "A306C", "T307P", "A308V", "I309N", "V311T", "A312G", "G314S", "D316G", "V318G", "A321T", "V322F", "A325T", "R327K", "A328S", "L330F", "H331Q", "P333L", "R334S", "R335Q", "R337T", "Q338P", "L340Q", "E341T", "R342G", "L344K", "L345K"], "nef": ["G3Q", "S6V", "K7N", "R8S", "S9R", "-11L", "S14R", "A15K", "V16E", "R19K", "R21K", "R22K", "A23P", "E24D", "A26P", "A27P", "D28E", "V30G", "A32P", "A33P", "S34F", "R35G", "D36A", "L37R", "K39N", "H40Q", "A42P", "I43F", "T44P", "S45I", "S46T", "N47I", "T48P", "A49P", "A50V", "D54V", "C55G", "A56P", "W57G", "A60T", "Q61P", "E62G", "E64G", "V66G", "V70F", "R71G", "P72L", "Q73R", "R77G", "M79K", "A83G", "L85V", "L100M", "K105R", "N126K", "V133N", "Y135F", "E149D", "T157S", "G159K", "N161T", "C163N", "L164F", "H166A", "M168V", "Q170M", "R178G", "M182Q", "V194M", "R196K", "L198V", "Y202F", "D205N"], "p17": ["F8Y", "I46L", "K103R", "K114R"], "p2": ["N9S"], "p24": ["L6H", "I37V", "N120H", "N139T", "R143K", "S146M", "A208G"], "p6": ["S3T", "T22A", "P25S", "P30T", "I31-", "Q52P"], "p7": ["N8G", "T12L"], "pro": ["K20R", "N37D", "V77I"], "rev": ["L21I", "R39S", "N40L", "R41G", "R43K", "R44S", "R48M", "Q51P", "I52L", "R53P", "S54*", "I55M", "S56R", "G57E", "W58P", "I59Y", "L60Y", "S61G", "N62H", "R66Q", "E69D", "L73S", "Q74P", "L75A", "P76T", "L78N", "E79*", "R80D", "L81F", "L83G", "C85F", "S86-", "E87-", "D88-", "C89-", "T91N", "S92F", "G93*", "Q95R", "V97G", "G98E", "S99T", "P100L", "Q101K", "I102K", "L103C", "V104L", "S106F", "L110F", "E111G", "K115*", "E116S", "E117G"], "tat": ["V67D", "P77L", "P81S", "E86L", "S87G"], "vif": ["W21C", "S23R", "I31V", "V39F", "E45G", "R50K", "P58Q", "T74S", "Q97H", "V98I", "N101A", "L109I", "Y110F", "T118A", "N122K", "L125V", "K158R", "M189R"], "vpr": ["N16Q", "R32K", "Q86-", "R87-", "S94R"], "vpu": ["P3S", "A16V", "L27F", "A50T", "E60D", "L61Q", "S62G", "A63R", "L64I", "M67L", "G68L", "-69V", "-70E", "-71M", "-72G", "H73N"]}, "labels": {"aa": "INT: E11D, A21T, G70E, S119R; RT-p51: D177E, I178M, G196E, Q197H, P247Q, E248K, V293I, V317A, Q334L, R356K; RT-p66: D177E, I178M, G196E, Q197H, P247Q, E248K, V293I, V317A, Q334L, R356K, L469I, S519N; gp120: T3L, E74D, -106L, K107R, N111E, T112S, -114D, -115T, -116T, -117S, -118G, -119M, -120I, -121L, E122G, G124D, E125K, I137R, M141W, K143Q, L147F, V154M, N160T, A191T, I197L, P210L, N251D, A253I, K277R, H280R, I281N, -282H, -283R, Y290H, A291T, D294E, D297N, N327K, Q335H, N369I, -375G, -376G, -377L, R391K, I395F, Q400H, N416T, N433P, N434G, E438D, R448K, R452S, Y456D, K459R, V461I, K462G, E464A, G467P, R475T, V477L, V478L, E481D; gp41: A6S, M7V, G13V, A22M, L26M, V28L, R31Q, Q32E, S35Y, G36V, I37T, V38E, Q39R, Q40M, N42K, R46K, V72I, R74G, A101V, E110K, M118R, K122R, E137T, F206L, H209P, L210R, P213Q, P216L, G221A, I222W, E223D, E225K, G226A, R229K, D230C, D232G, R233H, S235H, L237C, G240R, F241I, L242M, V247G, D248N, R250W, S251G, C253L, F255I, S256Q, Y257F, H258L, R259L, D262P, L264I, L265R, V267L, A268L, R269G, V271L, L273I, L274F, G275E, R276P, R277G, W279G, E280K, A281P, Y284N, W285A, L288F, Q290P, W292L, S293V, Q294P, K297N, K298Q, S299G, V301N, S302E, L303V, A306C, T307P, A308V, I309N, V311T, A312G, G314S, D316G, V318G, A321T, V322F, A325T, R327K, A328S, L330F, H331Q, P333L, R334S, R335Q, R337T, Q338P, L340Q, E341T, R342G, L344K, L345K; nef: G3Q, S6V, K7N, R8S, S9R, -11L, S14R, A15K, V16E, R19K, R21K, R22K, A23P, E24D, A26P, A27P, D28E, V30G, A32P, A33P, S34F, R35G, D36A, L37R, K39N, H40Q, A42P, I43F, T44P, S45I, S46T, N47I, T48P, A49P, A50V, D54V, C55G, A56P, W57G, A60T, Q61P, E62G, E64G, V66G, V70F, R71G, P72L, Q73R, R77G, M79K, A83G, L85V, L100M, K105R, N126K, V133N, Y135F, E149D, T157S, G159K, N161T, C163N, L164F, H166A, M168V, Q170M, R178G, M182Q, V194M, R196K, L198V, Y202F, D205N; p17: F8Y, I46L, K103R, K114R; p2: N9S; p24: L6H, I37V, N120H, N139T, R143K, S146M, A208G; p6: S3T, T22A, P25S, P30T, I31-, Q52P; p7: N8G, T12L; pro: K20R, N37D, V77I; rev: L21I, R39S, N40L, R41G, R43K, R44S, R48M, Q51P, I52L, R53P, S54*, I55M, S56R, G57E, W58P, I59Y, L60Y, S61G, N62H, R66Q, E69D, L73S, Q74P, L75A, P76T, L78N, E79*, R80D, L81F, L83G, C85F, S86-, E87-, D88-, C89-, T91N, S92F, G93*, Q95R, V97G, G98E, S99T, P100L, Q101K, I102K, L103C, V104L, S106F, L110F, E111G, K115*, E116S, E117G; tat: V67D, P77L, P81S, E86L, S87G; vif: W21C, S23R, I31V, V39F, E45G, R50K, P58Q, T74S, Q97H, V98I, N101A, L109I, Y110F, T118A, N122K, L125V, K158R, M189R; vpr: N16Q, R32K, Q86-, R87-, S94R; vpu: P3S, A16V, L27F, A50T, E60D, L61Q, S62G, A63R, L64I, M67L, G68L, -69V, -70E, -71M, -72G, H73N"}}}, {"name": "MF373127", "node_attrs": {"div": 0.22284000000000004, "accession": "MF373127", "clade_membership": {"value": "B"}, "country": {"value": "SE"}, "date": {"value": 2003.0}, "Strain_name": {"value": "005SE"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C352T", "A353C", "G354A", "A356C", "G361T", "T372C", "A380C", "G401A", "G471A", "C476T", "C516A", "A521C", "C522T", "A523C", "G542A", "C603A", "G615A", "A632G", "G644A", "A665G", "A673G", "A674C", "A675C", "C681G", "A682C", "G683A", "A689T", "C691A", "A692C", "G693A", "C698A", "C700A", "A701C", "G702A", "G709A", "A711G", "G712T", "C714A", "G721A", "C722T", "A725C", "A726C", "A727C", "T734G", "G738A", "T739A", "A742T", "G743T", "A744C", "G752A", "C756G", "A769T", "G770A", "A774C", "T775C", "C780A", "A783T", "G784T", "C787A", "T789G", "A792T", "A793G", "T794G", "A805T", "T808A", "T811A", "G813A", "G818T", "A819T", "A820T", "G821C", "G829A", "G834A", "G837C", "T838C", "A839C", "T852A", "C926A", "T974C", "G980A", "G987C", "T988C", "T992G", "A1025C", "A1090G", "T1091C", "T1100C", "A1101G", "A1127G", "C1169T", "G1192A", "C1229T", "A1242G", "C1243T", "G1271T", "A1274G", "A1367G", "A1400C", "T1452A", "C1460T", "A1475G", "T1484C", "A1587C", "A1601G", "A1642G", "A1686G", "G1737A", "C1768T", "A1772G", "G1784T", "G1794A", "A2241G", "T2335G", "A2413G", "A2579T", "A2618C", "A2813C", "A2818C", "T2829A", "A2842G", "A2866C", "C2909G", "G2926A", "G2947A", "C2978T", "A2981T", "A3265G", "A3280G", "A3291G", "A3292G", "G3439A", "G3483A", "T3497A", "G3529A", "C3542T", "A3592C", "T3602A", "A3619C", "T3668C", "A3919G", "A3985G", "A4081G", "T4085C", "A4112G", "A4145G", "G4174A", "G4183A", "A4293G", "T4316C", "G4376A", "A4391T", "A4397C", "T4678G", "T4679A", "G4695A", "G4696A", "G4701A", "C4726T", "C4728A", "G4764A", "T4776A", "G4778A", "A4781G", "A4888G", "T4910C", "A4951G", "A5015C", "A5046G", "C5050A", "T5072C", "A5119G", "G5140A", "A5154C", "A5159G", "A5186G", "T5188A", "A5248T", "T5260C", "T5292C", "G5363A", "T5454C", "A5461C", "G5463T", "A5545G", "C5563G", "A5566G", "A5574G", "T5576C", "T5617G", "T5618A", "A5621T", "C5651T", "G5653A", "T5686C", "G5711A", "T5739A", "A5748C", "A5790G", "T5799C", "-5800A", "-5805A", "-5806A", "-5809G", "-5810G", "G5845A", "G5856A", "C5916A", "G6020A", "T6024G", "A6030G", "G6079A", "C6097T", "-6171G", "T6178G", "C6183A", "C6190T", "A6191G", "A6194T", "C6198A", "G6201A", "-6203G", "-6204A", "-6205G", "A6209C", "-6215A", "A6222G", "A6234G", "T6245G", "A6249C", "A6251G", "T6252C", "C6253T", "G6261A", "A6266G", "G6267A", "A6273G", "C6278A", "G6280A", "A6283T", "T6287G", "A6292T", "T6294C", "T6297A", "T6299C", "A6304T", "T6306G", "A6309G", "C6318A", "A6322T", "G6323A", "A6330T", "T6351G", "A6352T", "A6360C", "C6364T", "A6367T", "G6368A", "A6374G", "A6376C", "C6377G", "A6378G", "G6379T", "G6380C", "A6389T", "A6390C", "G6391C", "T6398C", "G6403T", "A6406T", "T6414A", "A6415T", "C6416T", "A6417G", "C6428G", "G6440C", "G6442T", "T6447G", "A6448G", "G6451T", "T6452G", "G6463C", "G6466C", "T6467G", "A6470G", "A6471C", "A6476C", "A6478G", "T6485A", "A6488G", "A6490T", "A6492T", "G6498C", "A6500C", "T6504G", "A6507C", "A6512G", "A6516T", "A6520G", "G6525T", "A6532G", "T6534C", "T6536C", "A6539C", "A6543T", "A6544G", "T6551G", "A6555G", "A6560C", "G6561C", "A6571G", "G6577A", "G6581A", "T6585C", "G6588C", "A6595C", "A6597T", "G6604T", "T6641A", "G6647A", "T6655C", "A6664G", "A6669G", "C6692A", "A6693C", "T6763C", "A6773C", "G6774A", "A6803G", "C6810T", "A6834T", "G6848A", "C6935A", "A6936G", "G6948C", "-6978A", "-6979G", "-6980A", "-6981A", "-6982A", "-6984C", "A6989C", "A6990C", "A7046C", "G7101A", "A7102C", "A7111C", "G7123A", "G7137C", "A7149T", "A7155C", "A7158G", "G7160A", "C7164A", "T7165C", "G7166A", "C7174T", "G7182C", "A7202T", "A7210G", "A7215G", "T7217G", "A7221T", "T7222G", "A7229G", "A7231T", "A7239T", "A7241G", "A7246G", "G7256A", "C7264A", "A7269C", "C7272A", "A7273T", "A7275T", "G7293T", "G7295C", "T7308A", "G7310C", "G7311T", "A7313C", "G7316C", "A7322C", "C7327G", "C7354G", "T7357G", "G7361A", "A7372G", "C7429T", "A7439C", "C7463A", "C7469A", "G7508A", "A7532C", "A7540G", "C7544T", "G7549A", "C7553T", "T7575G", "T7579C", "C7645T", "C7699T", "G7709A", "A7710T", "G7726A", "A7755C", "A7796T", "C7801T", "A7818G", "A7887G", "T7888A", "G7901A", "C7906T", "T7919G", "C7934T", "C7939A", "C7950A", "A7963C", "A8006G", "G8010A", "T8013C", "G8017C", "G8030A", "C8048G", "T8097C", "C8123A", "A8142G", "G8144A", "G8161C", "C8167T", "G8170A", "T8177A", "C8209T", "C8232T", "C8236T", "G8267A", "C8320A", "A8340G", "A8364C", "-8373G", "-8374G", "C8382T", "A8390G", "G8409A", "A8425C", "C8440T", "C8460T", "A8469G", "G8588A", "A8597T", "C8607T", "A8608T", "T8646C", "C8648T", "T8666G", "T8758A", "A8762G", "C8771T", "T8786A", "C8810T", "G8814A", "A8815C", "C8840T", "T8843C", "G8848A", "A8879G", "C8903T", "T8914A", "T8918A", "G8924A", "G8933A", "G8942A"], "INT": ["I113V", "T124A", "K173R", "F181L", "V201I", "T206S", "I208L"], "RT-p51": ["K49R", "S162C", "N175H", "T240P", "V245E", "P272A", "T296S", "E399G"], "RT-p66": ["K49R", "S162C", "N175H", "T240P", "V245E", "P272A", "T296S", "E399G", "R463K", "S468T", "H483Y", "L503I"], "gp120": ["S1N", "T3S", "T21N", "V56I", "V57G", "E59G", "-106C", "N108K", "N109D", "N111Y", "N113W", "K123R", "K127R", "F131V", "N132T", "I133A", "S136D", "R138E", "K140R", "M141R", "Q142K", "K143N", "Y145D", "L147S", "F148Y", "Y149H", "K150N", "L151R", "D152G", "V154I", "P155Q", "D157N", "N159I", "I166M", "N169T", "V172I", "T174A", "Q175G", "A176P", "K179S", "F182L", "E183D", "I187N", "H188C", "P192A", "A196P", "L198R", "K199N", "C200G", "K203N", "K204N", "F205V", "N206A", "T208P", "C211S", "K212D", "N213I", "S215T", "T216P", "V217G", "Q218P", "T220A", "H221L", "R224M", "V227A", "S228P", "T229P", "Q230L", "L233V", "N234S", "S236P", "V243I", "I244T", "R245T", "E247D", "N248I", "S263T", "E265K", "N272S", "H280T", "R307Q", "I317V", "A319V", "N327M", "V332I", "Q361R", "S365T", "-375E", "-376K", "-377S", "N379P", "M398L", "R428T", "N432M", "N434T", "N435S", "D436N", "T437N", "E438K", "T441I", "G443A", "N450Y", "E454G", "L455V", "Y456L", "K459D", "K462I", "I463V", "V468I", "K472T", "A473D", "K474M", "R480I", "E481Q"], "gp41": ["V2E", "G3L", "I4L", "G5R", "M7L", "F8L", "S17R", "R46Q", "L54M", "Q56K", "V69I", "K77Q", "L81F", "L84F", "L91R", "E136I", "E151A", "T165S", "K172R", "N195R", "G200R", "F206V", "H209-", "L210-", "P211-", "A212-", "P216H", "E220D", "S235D", "R236Q", "L237S", "A243T", "L249V", "L265S", "A268S", "L274M", "E280G", "A281I", "W286C", "W292R", "A310V", "V322I", "L340A", "L345I"], "nef": ["-11G", "A23T", "D28A", "A33V", "H40Y", "I43V", "L85F", "H89F", "Y102H", "D108E", "V133I", "F139Y", "K150Q", "E158T", "S169N", "F191Y", "H192Q"], "p1": ["K4R"], "p17": ["S6F", "V7I", "S9I", "E15D", "I34L", "L61M", "Q63S", "Q90K", "V94I", "K113S", "K114Q", "Q116A", "A119-", "A120-", "G123E", "S125R", "S126N", "Q127N", "S129K", "Q130V"], "p2": ["N9T"], "p24": ["V3K", "Q4L", "N5H", "L6R", "Q9E", "Q13L", "I15P", "P17-", "R18-", "A22V", "V24A", "K25W", "E29K", "S33N", "E35K", "V36P", "S41T", "V86P", "H87Q", "E98D", "N120S", "I124V", "R154K", "T171V", "E180D"], "p6": ["S3G", "E20K", "P30L", "I31M", "A39T"], "p7": ["T12P", "K41Q"], "rev": ["K20R", "P29L", "G57Q", "W58R", "S61D", "S67R", "S86I", "S92Y", "S99N", "E105Q", "P107S", "A108T", "L110*"], "tat": ["K29H", "R57G", "Q63E", "T64A", "V67A", "P77Q", "P81T", "K85T"], "vif": ["I31R", "G37K", "V39I", "T47I", "H48N", "G60R", "L64I", "N101G", "L109M", "N122S", "T151A", "I154V", "T155N", "Q178R", "G185E", "N190H"], "vpr": ["E17A", "T19A", "N28E", "E48D", "I63T"], "vpu": ["L4E", "E5V", "A15V", "A16T", "R35K", "D44E", "R47S", "V65M", "D80N"]}, "labels": {"aa": "INT: I113V, T124A, K173R, F181L, V201I, T206S, I208L; RT-p51: K49R, S162C, N175H, T240P, V245E, P272A, T296S, E399G; RT-p66: K49R, S162C, N175H, T240P, V245E, P272A, T296S, E399G, R463K, S468T, H483Y, L503I; gp120: S1N, T3S, T21N, V56I, V57G, E59G, -106C, N108K, N109D, N111Y, N113W, K123R, K127R, F131V, N132T, I133A, S136D, R138E, K140R, M141R, Q142K, K143N, Y145D, L147S, F148Y, Y149H, K150N, L151R, D152G, V154I, P155Q, D157N, N159I, I166M, N169T, V172I, T174A, Q175G, A176P, K179S, F182L, E183D, I187N, H188C, P192A, A196P, L198R, K199N, C200G, K203N, K204N, F205V, N206A, T208P, C211S, K212D, N213I, S215T, T216P, V217G, Q218P, T220A, H221L, R224M, V227A, S228P, T229P, Q230L, L233V, N234S, S236P, V243I, I244T, R245T, E247D, N248I, S263T, E265K, N272S, H280T, R307Q, I317V, A319V, N327M, V332I, Q361R, S365T, -375E, -376K, -377S, N379P, M398L, R428T, N432M, N434T, N435S, D436N, T437N, E438K, T441I, G443A, N450Y, E454G, L455V, Y456L, K459D, K462I, I463V, V468I, K472T, A473D, K474M, R480I, E481Q; gp41: V2E, G3L, I4L, G5R, M7L, F8L, S17R, R46Q, L54M, Q56K, V69I, K77Q, L81F, L84F, L91R, E136I, E151A, T165S, K172R, N195R, G200R, F206V, H209-, L210-, P211-, A212-, P216H, E220D, S235D, R236Q, L237S, A243T, L249V, L265S, A268S, L274M, E280G, A281I, W286C, W292R, A310V, V322I, L340A, L345I; nef: -11G, A23T, D28A, A33V, H40Y, I43V, L85F, H89F, Y102H, D108E, V133I, F139Y, K150Q, E158T, S169N, F191Y, H192Q; p1: K4R; p17: S6F, V7I, S9I, E15D, I34L, L61M, Q63S, Q90K, V94I, K113S, K114Q, Q116A, A119-, A120-, G123E, S125R, S126N, Q127N, S129K, Q130V; p2: N9T; p24: V3K, Q4L, N5H, L6R, Q9E, Q13L, I15P, P17-, R18-, A22V, V24A, K25W, E29K, S33N, E35K, V36P, S41T, V86P, H87Q, E98D, N120S, I124V, R154K, T171V, E180D; p6: S3G, E20K, P30L, I31M, A39T; p7: T12P, K41Q; rev: K20R, P29L, G57Q, W58R, S61D, S67R, S86I, S92Y, S99N, E105Q, P107S, A108T, L110*; tat: K29H, R57G, Q63E, T64A, V67A, P77Q, P81T, K85T; vif: I31R, G37K, V39I, T47I, H48N, G60R, L64I, N101G, L109M, N122S, T151A, I154V, T155N, Q178R, G185E, N190H; vpr: E17A, T19A, N28E, E48D, I63T; vpu: L4E, E5V, A15V, A16T, R35K, D44E, R47S, V65M, D80N"}}}]}, {"name": "B_NODE_0000028", "node_attrs": {"div": 0.15343000000000004, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C152A", "T495G", "C641G", "G709A", "C747A", "G818A", "C1040T", "C1137A", "C1220T", "T1262C", "T1331C", "G1346A", "A1367G", "C1406T", "A1488G", "A1489G", "G1508A", "T1783A", "A1852G", "T2632C", "C2708T", "A2734G", "A2842G", "G2872A", "A3103G", "A3224C", "C3225A", "G3364A", "A3435G", "G3442A", "T3450C", "A3808C", "G4150A", "A4178G", "T4656C", "G4723A", "A4737G", "G4887A", "A4937C", "T4943C", "G5037A", "T5203C", "C5356T", "C5444A", "T5466C", "T5472A", "G5730A", "G5842A", "G6020A", "-6171A", "A6173G", "-6175G", "C6190T", "A6222T", "T6252C", "C6253T", "T6457C", "G6578A", "C6777A", "-6968T", "-6969G", "-6970G", "-6973T", "C7127A", "A7275G", "T7579C", "G7589A", "T7606G", "G7688A", "T8035C", "G8173A", "G8537A", "A8597G"], "INT": ["E11D", "I135V"], "RT-p51": ["T377Q"], "RT-p66": ["T377Q", "N447S", "L452S"], "gp120": ["V56I", "I133T", "S136G", "V242I", "N334K", "-370G", "-372W", "N378-", "N383S", "N435T", "K474R"], "p17": ["I34L", "S54A", "D102E", "S125N"], "p24": ["L136M"], "p6": ["L35Q"], "p7": ["N8G"], "rev": ["Y63H", "V109I"], "tat": ["T23N", "F32L"], "vif": ["S46N", "I51V", "L109Q", "E117D"], "vpr": ["T84I"], "vpu": ["I18L", "V79I"]}, "labels": {"aa": "INT: E11D, I135V; RT-p51: T377Q; RT-p66: T377Q, N447S, L452S; gp120: V56I, I133T, S136G, V242I, N334K, -370G, -372W, N378-, N383S, N435T, K474R; p17: I34L, S54A, D102E, S125N; p24: L136M; p6: L35Q; p7: N8G; rev: Y63H, V109I; tat: T23N, F32L; vif: S46N, I51V, L109Q, E117D; vpr: T84I; vpu: I18L, V79I"}}, "children": [{"name": "KY989951", "node_attrs": {"div": 0.21455000000000005, "accession": "KY989951", "clade_membership": {"value": "B"}, "country": {"value": "ES"}, "date": {"value": 2015.0}, "Strain_name": {"value": "100594"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A161C", "T200C", "C281A", "-305A", "T357C", "T377C", "A380G", "A424G", "A425G", "T426C", "C456T", "A499G", "G508A", "A530G", "T534G", "A548G", "A551G", "T567G", "A569G", "A576T", "C577T", "G599A", "T602C", "G607A", "G615A", "A619G", "G650A", "A653G", "C707T", "G712C", "C713G", "A730T", "G740A", "C746T", "C749G", "C773T", "A774C", "C827T", "T851C", "T858C", "T885A", "G987C", "T988C", "T992G", "G1019A", "A1022G", "G1077A", "G1078C", "A1090G", "A1131G", "C1136T", "A1142G", "C1169T", "C1187T", "T1335C", "A1349G", "C1362T", "C1403T", "A1430G", "A1442G", "T1451C", "G1455A", "G1474A", "T1481C", "C1490T", "A1497C", "C1501G", "G1503A", "G1527C", "A1536T", "A1567G", "G1568A", "C1656A", "C1681A", "T1771-", "A1772-", "G1773-", "T1790C", "C1795T", "T1796C", "C1831T", "A1834C", "G1849A", "A1855G", "A1903C", "A1932G", "G1972A", "T1978G", "A2023G", "G2027A", "G2068A", "T2095C", "G2230A", "T2257C", "A2293G", "C2296T", "A2297G", "A2305G", "T2323C", "T2335C", "T2458C", "C2488A", "T2499G", "G2518A", "T2527C", "C2533T", "T2542G", "C2575T", "A2579G", "G2580C", "C2635A", "C2644T", "A2698G", "G2710A", "A2713G", "C2714A", "A2726G", "A2727C", "T2737C", "G2761A", "T2791C", "A2815G", "G2828A", "T2829C", "C2848T", "A2875G", "G2887A", "T2899C", "T2917C", "G2926A", "A2956G", "C2975G", "A2977T", "T3022C", "G3046A", "A3080T", "G3099A", "C3100T", "G3127A", "A3136G", "G3162A", "A3164T", "G3205T", "G3211A", "A3217G", "C3232T", "A3264G", "A3286T", "G3340A", "C3346T", "C3352T", "T3368C", "G3379A", "G3385A", "T3399A", "A3457G", "G3473A", "G3477A", "G3494A", "C3496T", "T3497C", "C3498A", "G3529A", "T3544G", "C3545T", "G3556A", "T3566C", "T3567C", "T3652C", "A3655G", "C3688T", "A3697C", "G3701A", "A3768G", "G3796A", "A3805G", "C3823T", "A3855G", "C3889T", "T3967C", "T3977C", "A4087G", "A4107C", "C4123T", "C4146G", "A4148G", "A4385G", "T4412C", "G4464A", "A4474C", "T4477C", "C4501T", "T4534C", "G4573A", "C4576T", "A4652G", "T4655C", "C4667T", "A4682T", "G4684A", "A4692C", "G4694A", "T4706C", "A4717T", "C4728A", "T4772A", "C4807T", "A4808G", "A4814G", "G4818A", "A4819T", "C4820A", "A4865G", "T4912A", "G4913A", "T4917C", "C4919T", "T4925C", "C4965T", "T4969G", "G4995A", "C5027T", "A5036G", "T5047C", "C5050A", "A5059G", "G5060A", "C5086A", "A5089T", "T5102C", "G5140A", "A5155G", "A5159G", "C5162T", "G5185A", "T5194A", "T5206C", "A5213G", "C5214T", "A5215G", "T5237C", "G5305A", "T5333C", "A5336T", "T5357C", "G5365C", "G5366A", "G5370A", "C5398T", "G5403A", "T5430C", "T5442C", "T5448A", "A5461G", "A5462G", "T5487C", "A5491T", "A5494C", "C5511T", "G5548C", "A5555C", "C5567T", "C5569A", "T5576A", "T5584C", "C5611A", "A5613T", "C5614A", "G5620T", "A5622C", "T5626A", "T5627G", "A5628C", "G5629T", "G5647A", "A5652T", "C5654G", "A5655C", "A5659C", "G5673A", "T5686C", "A5712G", "G5718A", "A5746G", "G5747C", "A5751C", "T5778C", "A5790G", "T5791G", "T5799-", "T5801-", "G5802-", "G5803-", "G5808-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5841C", "A5866C", "C5867G", "A5869T", "T5870A", "T5871A", "A5946G", "G5948T", "G5963A", "T5964A", "A5965G", "G5972A", "C5998T", "G6023A", "T6024A", "T6046C", "T6134C", "T6170C", "T6178A", "G6179A", "-6180T", "C6183A", "A6185G", "A6186G", "T6187A", "T6193A", "G6195A", "C6198A", "G6201A", "-6207C", "-6212T", "-6214T", "-6215G", "-6216A", "G6220T", "A6223T", "G6224A", "G6225C", "G6227A", "A6229G", "G6277A", "A6282G", "T6293A", "A6304G", "C6305G", "T6306A", "A6311T", "A6330G", "A6333G", "A6335G", "G6339A", "G6345T", "G6346T", "T6395A", "A6443C", "G6458A", "A6465C", "G6466T", "A6476T", "A6490C", "C6496T", "G6525A", "T6551C", "G6577A", "A6589G", "A6594C", "T6598C", "C6618T", "A6622C", "G6634A", "G6644A", "A6664G", "C6673T", "T6676C", "A6686G", "-6697G", "A6703-", "G6710A", "G6711A", "G6712A", "G6716A", "C6729T", "G6731A", "T6735A", "C6790T", "A6797G", "C6807T", "T6808G", "A6810G", "C6811G", "G6821A", "A6823G", "G6832A", "T6835C", "T6853C", "T6856G", "C6935A", "A6960G", "G6963A", "-6971G", "-6972G", "-6975C", "-6977A", "-6978A", "-6979T", "-6980G", "-6981A", "-6982G", "-6983T", "-6984C", "-6985A", "A6986G", "A6990C", "C6991A", "C6993A", "T7003-", "A7007-", "C7008-", "C7024T", "A7095T", "T7099C", "T7106A", "C7107A", "A7108C", "A7120G", "G7126A", "A7129G", "A7148G", "A7158C", "T7159A", "A7161G", "C7164T", "C7201T", "T7222C", "C7267T", "G7276A", "A7312G", "A7322C", "A7373G", "G7375A", "A7402G", "T7433C", "G7519A", "G7552A", "A7573G", "C7590A", "T7630G", "G7633C", "G7640A", "C7651A", "A7668G", "T7681C", "G7689A", "T7691A", "T7692C", "A7700C", "G7709C", "G7720A", "A7722T", "G7735T", "C7742A", "G7753A", "G7759A", "C7801A", "C7825T", "C7874T", "T7876G", "G7883A", "G7885A", "A7929G", "C7941A", "A7943G", "G7944A", "A7988C", "A7992G", "C8005G", "T8008G", "G8010C", "G8050A", "G8061T", "C8065G", "C8077T", "G8079A", "A8086G", "G8105A", "T8145C", "G8181T", "A8196G", "G8204A", "T8227C", "G8245A", "G8255A", "A8266C", "G8267T", "G8276A", "C8277T", "T8279A", "C8291G", "T8292G", "C8293A", "C8294A", "A8311C", "G8317A", "G8335A", "C8336G", "G8342A", "G8354A", "A8363G", "A8364C", "-8370G", "-8371G", "-8373G", "-8374G", "G8376A", "C8382G", "C8383A", "T8384A", "G8385A", "G8393A", "G8407A", "G8409A", "A8425C", "G8432A", "G8446A", "T8492A", "C8514G", "G8534T", "G8540A", "T8582C", "C8590G", "T8595C", "A8604G", "G8605C", "A8636T", "A8647G", "C8648G", "C8688T"], "INT": ["N27S", "K111T", "T124S", "T125A", "I204V", "S230N"], "RT-p51": ["S68G", "I135R", "S162A", "Q207K", "K211A", "V245T", "P294A", "I329L", "G335D", "R356K", "M357L", "E370D", "K390R", "V435E"], "RT-p66": ["S68G", "I135R", "S162A", "Q207K", "K211A", "V245T", "P294A", "I329L", "G335D", "R356K", "M357L", "E370D", "K390R", "V435E", "D460N", "R461K", "V467I", "S468H", "H483Q", "L491P", "V536I", "K558R"], "gp120": ["E4D", "Q5D", "L6K", "K31R", "A32S", "V37K", "V40I", "V57K", "-106H", "N108-", "N109-", "T110-", "N111-", "T112-", "N113-", "S114-", "G124I", "E125N", "I126G", "M141I", "K143R", "L147I", "L151D", "I153L", "N160T", "T161N", "T164I", "S181T", "I197L", "D202N", "K204T", "T208S", "K212N", "R224K", "E247A", "T255I", "V264I", "S278G", "I281M", "G286K", "A288T", "T292I", "G293R", "D294K", "A308E", "K315E", "A318V", "K319G", "E323K", "-328N", "Q361K", "-373S", "-374G", "N379-", "-381N", "-382E", "Q414L", "S418N", "L425M", "N432E", "E436G", "T437I"], "gp41": ["M7L", "A96N", "E110D", "D113N", "K122R", "D129N", "L130T", "T133P", "I135L", "E136Q", "N140I", "K144N", "Q147K", "N166K", "V194I", "P213Q", "R214E", "D230G", "S235R", "R236P", "C253F", "R259H", "A268T", "S293I", "N298S", "V301I", "V318I", "V322L", "A325I", "F326I", "L330G", "H331N", "L345V"], "nef": ["-10G", "-11G", "G12R", "P14E", "A15T", "R22Q", "A23T", "D28A", "R35Q", "L58V", "E64G", "A83G", "S88A", "E98D", "Y102W"], "p1": ["H9N"], "p17": ["E55G", "R58K", "S67A", "L78V", "T81L", "V94I", "K95R", "S126T", "Y132F"], "p2": ["A11T"], "p24": ["L6M", "I15L", "L52I", "V86P", "H87Q", "M96I", "G116T", "N120S", "I134V"], "p6": ["P1H", "I31N", "D32-", "A39V", "S51L", "Q52P"], "p7": ["R3K", "K11Q", "T12S", "V13I", "E21Q", "I24L", "K34R"], "pro": ["E35D", "K45R", "D60E", "L63P", "V77I"], "rev": ["E11D", "K14Q", "F21I", "E32G", "E47A", "R53E", "S54A", "A68T", "L73V", "P77S", "R80G", "S86N", "E111D"], "tat": ["N24K", "K29G", "T39L", "K40Q", "A58P", "Q60P", "T64I", "H65N", "V67D", "S70P", "G79R"], "vif": ["K36Q", "Y44F", "H48N", "T74M", "D78I", "Y111H", "H127Y", "I128R", "A137T", "I154T", "T155K", "K158R", "T167K", "K168I", "G185E", "N190S"], "vpr": ["T19A", "N28S", "Y45H", "Q77H", "R87S", "A89T"], "vpu": ["Q2N", "P3T", "E5Y", "L7S", "A8S", "V14I", "A16G", "R47A", "E48D", "S62A"]}, "labels": {"aa": "INT: N27S, K111T, T124S, T125A, I204V, S230N; RT-p51: S68G, I135R, S162A, Q207K, K211A, V245T, P294A, I329L, G335D, R356K, M357L, E370D, K390R, V435E; RT-p66: S68G, I135R, S162A, Q207K, K211A, V245T, P294A, I329L, G335D, R356K, M357L, E370D, K390R, V435E, D460N, R461K, V467I, S468H, H483Q, L491P, V536I, K558R; gp120: E4D, Q5D, L6K, K31R, A32S, V37K, V40I, V57K, -106H, N108-, N109-, T110-, N111-, T112-, N113-, S114-, G124I, E125N, I126G, M141I, K143R, L147I, L151D, I153L, N160T, T161N, T164I, S181T, I197L, D202N, K204T, T208S, K212N, R224K, E247A, T255I, V264I, S278G, I281M, G286K, A288T, T292I, G293R, D294K, A308E, K315E, A318V, K319G, E323K, -328N, Q361K, -373S, -374G, N379-, -381N, -382E, Q414L, S418N, L425M, N432E, E436G, T437I; gp41: M7L, A96N, E110D, D113N, K122R, D129N, L130T, T133P, I135L, E136Q, N140I, K144N, Q147K, N166K, V194I, P213Q, R214E, D230G, S235R, R236P, C253F, R259H, A268T, S293I, N298S, V301I, V318I, V322L, A325I, F326I, L330G, H331N, L345V; nef: -10G, -11G, G12R, P14E, A15T, R22Q, A23T, D28A, R35Q, L58V, E64G, A83G, S88A, E98D, Y102W; p1: H9N; p17: E55G, R58K, S67A, L78V, T81L, V94I, K95R, S126T, Y132F; p2: A11T; p24: L6M, I15L, L52I, V86P, H87Q, M96I, G116T, N120S, I134V; p6: P1H, I31N, D32-, A39V, S51L, Q52P; p7: R3K, K11Q, T12S, V13I, E21Q, I24L, K34R; pro: E35D, K45R, D60E, L63P, V77I; rev: E11D, K14Q, F21I, E32G, E47A, R53E, S54A, A68T, L73V, P77S, R80G, S86N, E111D; tat: N24K, K29G, T39L, K40Q, A58P, Q60P, T64I, H65N, V67D, S70P, G79R; vif: K36Q, Y44F, H48N, T74M, D78I, Y111H, H127Y, I128R, A137T, I154T, T155K, K158R, T167K, K168I, G185E, N190S; vpr: T19A, N28S, Y45H, Q77H, R87S, A89T; vpu: Q2N, P3T, E5Y, L7S, A8S, V14I, A16G, R47A, E48D, S62A"}}}, {"name": "DQ837381", "node_attrs": {"div": 0.20063000000000003, "accession": "DQ837381", "clade_membership": {"value": "B"}, "country": {"value": "KR"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05CSR3"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C151A", "A213G", "G214A", "T288C", "-305T", "G369C", "G455A", "C467T", "G480A", "C503T", "C516A", "G518T", "A533G", "T570C", "A576G", "G579A", "C603A", "A604G", "G614T", "A645G", "A649C", "A661G", "A676C", "G677A", "G703C", "A706G", "A810G", "A812G", "T824C", "G911A", "C947A", "G989A", "C1118T", "A1145G", "T1148C", "G1173A", "T1174C", "G1205A", "C1230A", "G1232A", "A1241G", "A1265C", "A1307G", "T1409C", "T1421C", "T1457C", "G1486A", "G1499A", "C1501T", "T1502G", "T1517C", "G1562A", "A1607G", "A1664G", "T1676C", "A1736G", "A1743G", "A1745G", "C1751T", "T1771C", "G1883A", "A1908G", "G1912A", "A1920G", "C1985A", "C1986T", "C1987G", "C2075A", "G2117A", "A2164G", "C2596T", "G2624A", "A2677G", "A2693G", "G2704A", "A2707C", "A2818G", "T2854A", "A2888G", "A2920G", "T2922C", "A2938G", "C2941A", "G2972A", "A2977C", "G2984A", "G3019A", "T3052C", "C3055T", "C3067T", "A3071G", "G3085A", "G3094A", "A3096T", "A3164G", "C3223T", "A3249G", "C3252T", "C3294T", "C3303T", "A3304G", "G3307A", "A3316G", "T3328C", "C3415T", "G3427A", "G3439A", "T3449G", "A3454G", "G3467A", "T3469C", "T3497A", "C3542T", "G3562A", "A3571G", "G3651A", "T3668C", "A3684G", "G3695A", "G3755A", "C3756A", "A3760G", "G3814A", "G3825C", "C3843T", "C3857T", "A3934G", "T3976C", "A3982G", "A4025G", "T4039C", "G4051A", "C4159T", "T4198C", "G4263C", "G4267A", "C4321T", "C4475A", "A4525G", "T4537C", "C4543A", "A4564G", "A4577T", "T4676C", "T4679C", "C4726T", "A4751G", "A4782G", "C4820T", "G4856A", "A4860G", "G4870A", "C4871T", "T4886A", "A4888C", "C4889A", "T4912G", "T4952G", "G4982T", "T5062C", "A5085G", "G5087A", "C5091T", "G5137A", "A5159T", "T5188G", "A5213C", "G5225A", "T5251C", "G5267A", "C5281T", "A5282T", "T5293G", "A5345G", "T5354A", "G5412T", "C5425A", "A5431G", "G5437C", "T5492C", "A5495G", "A5545C", "G5599A", "C5614T", "A5619G", "A5631G", "A5659T", "G5668A", "T5670A", "T5677A", "A5685T", "C5688T", 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"Y120F", "F121L", "N126G", "A156V", "G159R", "N162T", "C163S", "M168I", "M173I", "D174E", "E197D", "D205N"], "p17": ["E12Q", "R30K", "G49S", "L61I", "Y79H", "T81A", "V82I", "Q90R", "K91R", "E93D", "I104V", "E105A", "N109S", "K114T", "G123A", "N124S"], "p24": ["L6I", "I27V", "V148T"], "p6": ["T22A", "I31T"], "p7": ["R7K", "T12M"], "pro": ["D29N", "N37S", "K41R", "L63M", "L93I"], "rev": ["E10D", "E32Q", "R53Q", "G57A", "I59V", "S61R", "P67S", "Q74P", "S99D", "I102V", "P107S", "A108T"], "tat": ["K12N", "Q17K", "K19E", "A21P", "K40R", "R78P"], "vif": ["K33R", "T47I", "I66V", "R92G", "S95N", "N101T", "Q109R", "N122K", "R132S", "I159T", "T167A", "R184K"], "vpr": ["T19S", "N28R", "V37P", "G41S", "A55T", "I60L", "I63M"], "vpu": ["P3S", "V21I", "S24T", "L27F", "L34R", "Q36E", "R37K", "D40E", "E58D", "A63K", "M67R", "H74L"]}, "labels": {"aa": "INT: S17T, A23V, I84V, G163A, L234I, D256E, I268F; RT-p51: V8I, D177N, T200A, E204D, N265D, V276A, V293I, E297K, I326V, Q334L, M357V, K385R, T386I, T400I, T403M; RT-p66: V8I, D177N, T200A, E204D, N265D, V276A, V293I, E297K, I326V, Q334L, M357V, K385R, T386I, T400I, T403M, S452A, V458I, S468T, H483Y, S519N, K530R, A534T, A554N; gp120: T3K, T21N, D34S, N102K, D105N, -106N, -107V, N109D, N111T, K123I, N128K, S130Y, I137M, R138I, Q142K, K143E, K150N, I156L, N159S, N160L, T164A, T174K, V180I, A191T, K203T, E241D, F249I, T255N, S263L, E265K, R287K, T292A, D297N, A308K, K309S, N311T, N312D, Q316K, K319D, R322S, Q335P, N349T, S365G, T366N, N368S, -373N, -374D, -375L, T380N, -381S, -382S, D384I, T385N, I396V, R412K, R416S, L425I, N432K, N433D, E436T, T437G, T439I, G443A, K462R; gp41: G3T, I4L, K77R, A96T, A101S, S104N, K106R, S107N, D109S, E110Q, E119Q, Y127V, D129S, L130V, T133R, E137K, S157N, R236Q, L237S, D239H, A243E, S256L, A281I, N287S, N305D, V321A, F326G, I329L; nef: S9-, R21E, K39R, H40Y, I43L, C55L, L85V, Y102H, Y115H, Y120F, F121L, N126G, A156V, G159R, N162T, C163S, M168I, M173I, D174E, E197D, D205N; p17: E12Q, R30K, G49S, L61I, Y79H, T81A, V82I, Q90R, K91R, E93D, I104V, E105A, N109S, K114T, G123A, N124S; p24: L6I, I27V, V148T; p6: T22A, I31T; p7: R7K, T12M; pro: D29N, N37S, K41R, L63M, L93I; rev: E10D, E32Q, R53Q, G57A, I59V, S61R, P67S, Q74P, S99D, I102V, P107S, A108T; tat: K12N, Q17K, K19E, A21P, K40R, R78P; vif: K33R, T47I, I66V, R92G, S95N, N101T, Q109R, N122K, R132S, I159T, T167A, R184K; vpr: T19S, N28R, V37P, G41S, A55T, I60L, I63M; vpu: P3S, V21I, S24T, L27F, L34R, Q36E, R37K, D40E, E58D, A63K, M67R, H74L"}}}]}]}, {"name": "B_NODE_0000029", "node_attrs": {"div": 0.14411000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G265A", "C516T", "G599A", "G1271T", "G1313A", "A3264G", "G4695A", "T5062C", "T6835A", "C6935A", "-6971A", "-6973T", "A6989-", "-7000A", "-7001A", "-7002A", "T7433C", "G7658C", "T8103C", "C8277T", "A8364-", "T8666C", "A8739G"], "RT-p51": ["K390R"], "RT-p66": ["K390R"], "gp120": ["I317V", "-370S"], "gp41": ["E119Q", "V267A"], "nef": ["R178K"], "rev": ["P31S"], "vif": ["G37K", "I159T"]}, "labels": {"aa": "RT-p51: K390R; RT-p66: K390R; gp120: I317V, -370S; gp41: E119Q, V267A; nef: R178K; rev: P31S; vif: G37K, I159T"}}, "children": [{"name": "B_NODE_0000030", "node_attrs": {"div": 0.15193, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A571T", "C749A", "G771C", "A774T", "C1220T", "G1404A", "T1452C", "G1619A", "A1664G", "A1736G", "A1841G", "A2459G", "G2686A", "A2693G", "A2727G", "A2925G", "G3019A", "A3124G", "A3280G", "A3391G", "G3473A", "G3477A", "A3890T", "A3910G", "A4145G", "G4267A", "C4728A", "A5213G", "G5225A", "A5335G", "C5445A", "T5492C", "C5495A", "G5501C", "G5548A", "C5552A", "A5594G", "C5602T", "C5620G", "A5621T", "T5686C", "G5775A", "T5799-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5916A", "A6176G", "-6214A", "A6232G", "A6251G", "A6532G", "A6767C", "-6830G", "-6977G", "-6980G", "-6984C", "-6985A", "-6995G", 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I15L, G225S; pro: I15V; rev: L13I, L60I, S61D; tat: T40K, G42A, A58T, P59H; vif: H48N; vpr: Q77R; vpu: Q5V"}}, "children": [{"name": "FJ469764", "node_attrs": {"div": 0.19389, "accession": "FJ469764", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2003.0}, "Strain_name": {"value": "PRLS24"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A424G", "C467T", "T495A", "A500G", "A511G", "G520A", "A530G", "A562G", "A566C", "T572C", "G579A", "C587T", "C603G", "A604C", "G607A", "A619G", "C641T", "A645G", "A676G", "C714A", "G770A", "A809G", "G829A", "A833G", "T852G", "T978C", "T1004C", "T1052C", "A1124G", "G1126A", "C1137A", "A1199G", "C1229T", "T1263A", "T1271G", "C1316T", "T1331C", "T1335C", "C1403T", "T1427A", "A1430G", "T1451C", "G1455A", "G1474A", "A1489G", "G1495A", "A1496G", "G1499A", "A1525G", "A1529G", "A1567G", "T1610C", "C1656A", "T1679C", "G1687A", "A1691G", "A1701T", "A1714C", "G1769A", "C1782A", "G1794A", "T1796C", "C1826G", "G1844T", "G1912A", "C1985G", "C1996T", "T2013C", "A2242G", "A2272G", "T2476C", "A2500T", "A2579T", "G2682A", "A2697C", "T2719C", "C2720T", "A2755G", "G2833A", "G2914A", "A2929G", "G2969A", "C3013T", "G3046A", "C3067T", "C3100T", "T3133C", "G3168A", "C3175T", "G3221T", "A3293T", "G3307T", "A3388G", "A3421G", "G3439A", "G3442A", "G3490A", "G3523A", "C3533G", "T3550C", "T3559C", "G3667A", "A3748G", "G3766A", "G3796A", "C3799A", "T3967C", "T4039C", "G4057A", "C4078A", "A4096G", "G4174A", "A4189G", "C4195T", "A4219G", "C4321T", "G4353A", "G4495A", "T4609C", "A4611G", "A4644G", "A4652G", "T4656C", "T4674C", "A4683G", "A4693G", "G4696A", "T4703G", "G4708A", "G4746C", "C4752T", "A4774G", "A4775C", "A4782G", "G4802A", "T4840C", "G4856A", "A4858C", "A4860G", "G4864A", "A4865T", "G4887A", "T4952G", "A4956C", "T4969G", "A4993C", "A5015G", "C5027T", "T5028C", "G5037A", "A5046G", "A5056G", "A5119G", "T5188A", "G5212A", "C5214G", "G5226A", "T5251C", "T5314C", "A5345G", "A5355T", "G5365C", "G5366A", "T5424C", "G5427A", "T5470C", "C5508T", "C5511T", "A5533G", "C5542A", "C5563G", "G5575A", "T5576C", "T5578C", "C5579A", "C5614G", "T5616C", "T5618C", "T5627A", "A5628T", "C5630T", "G5635A", "A5643T", "G5644A", "G5653T", "C5654T", "G5673A", "G5683A", "A5702G", "A5720G", "A5734C", "A5751C", "A5784G", "C5795G", "T5801-", "G5802-", "G5803-", "G5808-", "C5827G", "C5834T", "A5840T", "G5845A", "C5862A", "A5867C", "C5878T", "A5881G", "C5884T", "A5947G", "T5951C", "G6028A", "T6049C", "T6101C", "C6139T", "G6167A", "T6170G", "-6171C", "-6172C", "A6174C", "-6175T", "A6177T", "T6178C", "G6179T", "-6180C", "A6188G", "A6192C", "A6194G", "G6195T", "T6196C", "A6197T", "G6201C", "A6206-", "-6211G", "-6212C", "-6213C", "-6215C", "-6216T", "G6225A", "A6257T", "A6275G", "G6277A", "C6278A", "G6280A", "T6296C", "G6311A", "T6321C", "A6327G", "C6361T", "G6391A", "G6392A", "G6451A", "T6460G", "A6475T", "G6525A", "A6538C", "A6553G", "G6604A", "C6618T", "G6631A", "T6655C", "G6743A", "T6763C", "G6774A", "G6776T", "A6785G", "T6787A", "A6803G", "T6808C", "A6833-", "A6835G", "C6862A", "T6901C", "A6913G", "A6935G", "A6936G", "T6949G", "G6954T", "G6955C", "-6968T", "-6969G", "-6970G", "-6972G", "A6974G", "-6975G", "-6978C", "-6979T", "-6981A", "-6982C", "-6983A", "-6989T", "T6994A", "-6998G", "-6999G", "-7005A", "-7009A", "A7010C", "C7016A", "A7066G", "G7101A", "A7152G", "T7159C", "A7161C", "C7164G", "T7165C", "G7182T", "A7186G", "A7234G", "A7261G", "A7322C", "G7369A", "A7373C", "G7390A", "A7522G", "T7630C", "G7631A", "G7640C", "C7651A", "C7678A", "G7689A", "C7702T", "C7706A", "G7726A", "G7773A", "G7831A", "G7846A", "T7852C", "A7873G", "A7891T", "C7898A", "T7921C", "C7931A", "T7932A", "C7939T", "C7951A", "T7968C", "G7995A", "A7996C", "A8006G", "T8008A", "C8009A", "G8042A", "C8051A", "C8146T", "C8167A", "C8168A", "G8170A", "G8173A", "T8197G", "C8213T", "A8216G", "C8221T", "A8228G", "G8264A", "T8268C", "G8276C", "A8288G", "C8291A", "C8296T", "T8302A", "A8303G", "G8304T", "G8323A", "G8329A", "G8342A", "-8364G", "A8367G", "T8369G", "-8370T", "-8371T", "-8374G", "G8376A", "G8377A", "C8386T", "G8388A", "A8425T", "C8471T", "A8591T", "C8640T", "A8643G", "G8654A", "A8655C", "G8784C", "G8799A", "A8812C", "G8817A", "A8823G", "A8844G", "G8848A", "G8852A", "G8861A", "G8905A", "C8906A", "A8909G", "A8917C", "T9072C", "G9095A", "T9097G", "C9108T", "T9115C", "G9132A", "G9175A", "T9179A"], "INT": ["G193E", "D279G"], "RT-p51": ["S162C", "G196E", "K201T", "V292I", "R358K", "A376S", "T400S", "E404D"], "RT-p66": ["S162C", "G196E", "K201T", "V292I", "R358K", "A376S", "T400S", "E404D", "D460N", "Q480E"], "gp120": ["T3K", "K5Q", "T21N", "Y33H", "D105N", "-106A", "-107T", "N108V", "N109S", "T112A", "N113T", "A114V", "-116T", "G124E", "T135S", "S136G", "M141V", "Q142K", "V153I", "I156T", "N158S", "V180I", "D202E", "R224K", "T255I", "D294E", "D297N", "I305L", "R307K", "A308S", "N311E", "-326E", "Q361G", "S365R", "W367F", "-372W", "-373S", "-374G", "-375A", "-376D", "-377T", "N379Y", "-381E", "-382G", "I386L", "L388I", "R416K", "N433S", "E436T", "T437S", "G443V", "K472R"], "gp41": ["M7L", "V24L", "E110R", "D113H", "D125E", "S157N", "N166K", "M176I", "R196S", "Q199K", "L210N", "I222T", "R231N", "S235G", "V247I", "L289I", "N298K", "L304F", "N305D", "I309V", "V321I", "V322A", "A325L", "I329V", "L330I", "R334V"], "nef": ["R8G", "S9G", "-10L", "-11G", "G12K", "A15V", "V16I", "D28V", "I101V", "K105Q", "V148L", "V153I", "N157T", "G159R", "N161D", "M168V", "S169N", "M173I", "K178R", "R188K", "H192T"], "p1": ["H9Q"], "p17": ["S54T", "Q59R", "G62E", "K76R", "V82I", "Q90A", "K95R", "I104V", "K114R", "Q127K"], "p2": ["A11T"], "p24": ["S33N", "S41A", "R132K", "L136M", "S178T"], "p6": ["S3N", "T8S", "E12A", "L35M", "A39T"], "p7": ["R3K", "N8S", "R10K", "K20R", "K34R"], "pro": ["L10V", "G16W", "L63A", "I72T"], "rev": ["D9E", "F21L", "L22I", "P28Q", "S54K", "G65D", "A68E", "P100S", "P107N", "A108T", "V109I", "*117E"], "tat": ["F32L", "R53G", "Q63E", "V67T", "S68H", "S75T", "P77L", "P81Q", "S87P"], "vif": ["M8T", "I9V", "T20A", "Y30H", "K33G", "K36R", "R41K", "E54Q", "H56Y", "K63S", "I66V", "V85A", "K91T", "R92G", "R93N", "N122K", "I124L", "I128R", "Q136P", "I154V", "K157R", "Q178R"], "vpr": ["N28R", "V37G", "G41N", "T84S", "R87T"], "vpu": ["P3A", "L4S", "L7Y", "A8V", "V10I", "L12F", "V13I", "A16L", "V26I", "K32R", "K38R", "I43L", "E48D", "A63G", "H74D", "P76L", "D78V", "D80N"]}, "labels": {"aa": "INT: G193E, D279G; RT-p51: S162C, G196E, K201T, V292I, R358K, A376S, T400S, E404D; RT-p66: S162C, G196E, K201T, V292I, R358K, A376S, T400S, E404D, D460N, Q480E; gp120: T3K, K5Q, T21N, Y33H, D105N, -106A, -107T, N108V, N109S, T112A, N113T, A114V, -116T, G124E, T135S, S136G, M141V, Q142K, V153I, I156T, N158S, V180I, D202E, R224K, T255I, D294E, D297N, I305L, R307K, A308S, N311E, -326E, Q361G, S365R, W367F, -372W, -373S, -374G, -375A, -376D, -377T, N379Y, -381E, -382G, I386L, L388I, R416K, N433S, E436T, T437S, G443V, K472R; gp41: M7L, V24L, E110R, D113H, D125E, S157N, N166K, M176I, R196S, Q199K, L210N, I222T, R231N, S235G, V247I, L289I, N298K, L304F, N305D, I309V, V321I, V322A, A325L, I329V, L330I, R334V; nef: R8G, S9G, -10L, -11G, G12K, A15V, V16I, D28V, I101V, K105Q, V148L, V153I, N157T, G159R, N161D, M168V, S169N, M173I, K178R, R188K, H192T; p1: H9Q; p17: S54T, Q59R, G62E, K76R, V82I, Q90A, K95R, I104V, K114R, Q127K; p2: A11T; p24: S33N, S41A, R132K, L136M, S178T; p6: S3N, T8S, E12A, L35M, A39T; p7: R3K, N8S, R10K, K20R, K34R; pro: L10V, G16W, L63A, I72T; rev: D9E, F21L, L22I, P28Q, S54K, G65D, A68E, P100S, P107N, A108T, V109I, *117E; tat: F32L, R53G, Q63E, V67T, S68H, S75T, P77L, P81Q, S87P; vif: M8T, I9V, T20A, Y30H, K33G, K36R, R41K, E54Q, H56Y, K63S, I66V, V85A, K91T, R92G, R93N, N122K, I124L, I128R, Q136P, I154V, K157R, Q178R; vpr: N28R, V37G, G41N, T84S, R87T; vpu: P3A, L4S, L7Y, A8V, V10I, L12F, V13I, A16L, V26I, K32R, K38R, I43L, E48D, A63G, H74D, P76L, D78V, D80N"}}}, {"name": "FJ469715", "node_attrs": {"div": 0.20281000000000002, "accession": "FJ469715", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "Strain_name": {"value": "CR0289Z"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G369C", "A418G", "A425G", "T426C", "A437C", "T473C", "A491G", "T506C", "T516A", "G518A", "G520C", "A548G", "G612A", "C641G", "G644A", "C679T", "A689G", "C707T", "G716T", "T852A", "A920G", "A932G", "G980A", "A1002G", "C1013A", "A1115G", "C1235T", "T1238C", "C1253T", "A1274G", "G1301A", "C1351A", "A1352G", "C1354G", "A1377T", "G1388A", "G1394A", "A1397G", "G1419A", "T1427G", "T1457A", "C1459A", "A1464T", "C1478T", "C1490T", "A1493G", "G1532A", "A1588G", "A1592G", "T1628A", "T1653C", "C1656T", "G1718A", "A1743-", "C1744-", "A1745-", "C1752T", "G1766A", "C1768A", "T1792C", "C1828T", "A1839G", "A1907G", "A1918G", "A1920G", "C1986T", "C1987T", "A1988G", "G2027A", "C2083T", "T2158G", "G2224A", "G2230A", "G2321A", "A2350G", "A2419T", "G2426A", "G2428A", "C2464T", "T2485C", "T2494C", "T2499C", "C2503T", "A2599G", "T2605C", "A2617G", "A2692G", "T2737G", "A2752G", "G2761A", "T2788G", "A2827T", "T2829A", "A2842G", "G2887A", "C2908T", "C2909G", "G2926A", "A2951G", "G2972A", "G2984A", "A3043G", "A3058C", "G3094A", "A3154G", "G3166A", "G3173A", "T3197C", "G3221A", "A3265G", "G3290A", "C3294T", "C3321A", "C3376T", "G3385A", "T3399A", "G3427A", "A3474G", "T3493G", "A3535G", "G3562A", "G3685A", "A3703G", "G3755A", "A3772G", "G3814A", "G3825A", "C3843T", "T3853C", "C3857A", "G3859A", "A3871G", "T3946C", "A3952G", "A3989G", "T4006A", "A4076C", "A4112G", "T4144C", "G4156A", "A4222G", "G4229A", "A4264G", "A4273G", "T4316C", "G4344A", "G4354A", "G4376A", "A4391T", "C4396T", "A4423C", "T4498C", "T4534C", "A4652C", "G4684A", "A4692C", "G4694A", "G4701A", "A4721G", "C4724T", "A4751G", "T4769G", "C4786T", "A4806G", "C4820T", "G4829A", "A4857G", "A4865G", "G4887C", "C4899A", "T4910C", "A4966G", "G4982T", "T5043C", "T5047G", "C5062G", "A5085G", "G5114A", "C5115T", "G5140A", "G5143A", "T5147A", "A5155G", "T5206C", "C5221T", "T5251A", "G5275A", "G5359T", "A5362G", "G5433A", "G5437C", "T5442C", "A5446G", "A5447C", "A5461T", "G5463T", "T5484C", "T5584C", "G5599A", "A5607G", "T5617G", "T5618A", "A5640C", "G5647T", "C5651T", "T5677A", "A5694G", "T5705C", "G5718A", "G5730A", "T5731A", "-5799G", "-5800G", "-5804G", "-5805G", "-5806A", "-5807T", "-5809G", "-5810G", "A5846C", "A5861T", "A5869G", "C5884A", "A5911T", "C5917G", "C5949G", "T5956G", "G5963A", "A5965G", "T5968C", "G6020A", "A6044G", "A6065G", "A6076G", "T6085G", "C6097T", "A6118C", "A6131C", "T6134C", "A6158G", "C6165T", "-6171A", "-6172T", "-6175G", "A6177G", "T6178G", "G6179A", "-6180G", "C6183A", "A6186C", "T6187A", "G6195A", "C6198G", "A6200C", "T6202C", "-6203T", "-6204G", "-6205G", "-6207G", "A6208T", "T6210G", "-6211C", "-6212T", "-6213T", "-6215A", "-6216G", "A6221G", "A6223T", "G6224A", "G6225C", "A6228G", "G6260A", "G6261A", "T6276A", "T6298A", "G6311T", "G6323A", "A6326G", "T6328G", "A6330T", "C6382T", "C6412A", "C6428-", "G6458A", "T6460C", "G6463A", "A6465C", "G6466A", "C6469T", "A6471G", "C6477A", "C6499T", "A6544C", "C6548T", "G6550A", "A6594T", "A6595T", "A6602T", "A6605G", "T6637C", "G6638A", "A6715G", "T6721C", "A6734G", "T6735A", "T6745C", "T6772A", "A6773G", "C6777T", "A6779G", "A6781T", "A6798G", "A6799C", "G6802A", "C6807T", "-6831G", "-6832G", "A6833G", "A6834G", "G6848A", "C6850A", "A6854G", "T6856G", "A6858G", "G6871A", "A6881G", "T6885A", "A6929T", "A6956T", "A6959G", "A6960C", "G6963A", "C6966A", "-6972C", "-6975T", "T6976G", "-6978A", "-6979G", "-6981G", "-6982G", "-6983T", "A6986C", "-6989G", "A6990G", "C6993A", "-6998A", "-6999C", "-7005G", "-7009T", "A7015T", "G7026A", "A7032G", "A7040G", "T7047A", "G7054A", "A7095T", "T7106A", "A7148G", "C7153A", "C7156T", "A7158G", "C7164A", "G7198A", "T7222C", "A7239G", "A7246G", "A7274C", "A7313C", "A7322G", "G7375A", "T7386C", "A7420G", "T7432C", "G7441A", "C7463A", "C7489A", "G7519A", "A7533G", "T7561G", "T7565A", "T7622A", "C7625A", "A7627G", "G7628A", "T7630A", "G7633A", "A7668G", "C7690A", "T7691G", "T7692A", "A7693G", "C7701G", "C7702A", "A7705G", "A7744G", "A7771T", "A7782G", "C7792T", "A7799C", "A7880T", "G7885A", "C7906T", "A7929G", "C7939A", "C7941A", "G8007C", "G8010A", "T8016C", "G8017A", "G8018A", "A8019C", "T8020A", "C8062T", "C8065A", "T8112C", "A8132G", "A8188G", "C8215T", "C8218T", "C8220T", "G8231A", "G8245A", "T8265C", "G8267A", "A8288T", "C8294A", "T8358-", "C8359-", "A8360-", "A8361-", "A8362-", "A8363-", "G8365-", "T8366-", "-8370A", "-8371A", "-8374A", "T8375A", "A8378C", "A8403C", "G8404A", "A8408C", "A8413G", "C8415A", "C8416T", "C8445A", "A8456G", "T8492C", "C8495T", "A8497C", "G8502A", "A8503G", "T8504C", "T8505C", "G8506T", "A8516G", "A8522T", "G8528A", "G8534A", "T8582C", "A8584T", "A8586C", "C8590G", "T8596G", "A8597G", "T8646C", "C8651A", "A8663G", "C8666G", "T8747C", "T8758A", "A8762G", "G8789C", "A8815C", "T8835C", "G8870A", "G8875A", "T8915C", "A8917G", "T8966G", "G9006A", "C9012A", "T9068C", "T9075C", "C9078T"], "INT": ["S17N", "A23V", "L28I", "I72V", "I101L", "I113V", "E152K", "F181L", "G190E", "V201I", "T206S", "Q216H"], "RT-p51": ["D76N", "V111I", "I135T", "F214L", "V245E", "P272A", "T286A", "V293I", "E297K", "M357I", "A360T", "A376T", "E399K", "T400I", "T409N", "V435E"], "RT-p66": ["D76N", "V111I", "I135T", "F214L", "V245E", "P272A", "T286A", "V293I", "E297K", "M357I", "A360T", "A376T", "E399K", "T400I", "T409N", "V435E", "D460S", "A554T"], "gp120": ["T3S", "E19D", "T21K", "A32G", "D34E", "V37M", "V56I", "N64D", "N71D", "H77Q", "K93Q", "N102D", "T104I", "-106Y", "-107K", "N109T", "T112N", "-119N", "-120T", "-121T", "K123D", "G124T", "E125G", "S136N", "M141K", "V153L", "D157N", "N158E", "D159V", "P192-"], "gp41": ["I4L", "M7V", "V24I", "V28A", "L54M", "K77R", "S88T", "S107T", "L108M", "D109K", "E110G", "K122R", "D129G", "L130E", "T133R", "I135L", "N160S", "N166Q", "I193L", "H209R", "P213Q", "S235T", "R236Q", "V238A", "D239T", "I270T", "R277G", "A306V", "A310T", "V321A", "V322I", "A325V", "I329F", "H331N"], "nef": ["R8E", "S9-", "R21Q", "E24G", "P25I", "N52T", "D54S", "C55L", "Y81F", "K82Q", "A83G", "L85W", "Y102H", "D108E", "F139Y", "E149D", "E158A", "R188S", "H192R", "D205N"], "p1": ["S8P", "H9Y"], "p17": ["E12Q", "K28R", "R30K", "L61I", "G62A", "K91R", "E93K", "D102E", "A115V", "Q127H"], "p2": ["T12N", "M14L"], "p24": ["S41T", "I91V", "E180D", "P207Q", "A208G", "T216S", "V230I"], "p6": ["T23-", "P25S", "P30Q", "L38S", "S50L"], "p7": ["K41R"], "pro": ["K14R", "N37D", "K41R", "I64V", "V77I"], "rev": ["S31T", "R53H", "G57N", "W58R", "P72S", "L73I", "Q95R", "T114A"], "tat": ["A21P", "N24A", "K29Y", "S70P", "T74A", "P77H"], "vif": ["K22N", "K36Q", "K37R", "V39I", "D61E", "T67I", "T74A", "K91E", "N101H", "Q105K", "H127R", "R132S", "T151A", "I154R", "T159R", "T167A", "P177S", "G185E", "S186N", "H187Q", "N190S"], "vpr": ["A4I", "Y15N", "N28S", "V37A", "G41S", "R85L", "Q86R"], "vpu": ["L4E", "V14L", "A15V", "S24T", "I33T", "L42I", "E66G", "-69V", "-70E", "-71M", "-72G", "D80A"]}, "labels": {"aa": "INT: S17N, A23V, L28I, I72V, I101L, I113V, E152K, F181L, G190E, V201I, T206S, Q216H; RT-p51: D76N, V111I, I135T, F214L, V245E, P272A, T286A, V293I, E297K, M357I, A360T, A376T, E399K, T400I, T409N, V435E; RT-p66: D76N, V111I, I135T, F214L, V245E, P272A, T286A, V293I, E297K, M357I, A360T, A376T, E399K, T400I, T409N, V435E, D460S, A554T; gp120: T3S, E19D, T21K, A32G, D34E, V37M, V56I, N64D, N71D, H77Q, K93Q, N102D, T104I, -106Y, -107K, N109T, T112N, -119N, -120T, -121T, K123D, G124T, E125G, S136N, M141K, V153L, D157N, N158E, D159V, P192-; gp41: I4L, M7V, V24I, V28A, L54M, K77R, S88T, S107T, L108M, D109K, E110G, K122R, D129G, L130E, T133R, I135L, N160S, N166Q, I193L, H209R, P213Q, S235T, R236Q, V238A, D239T, I270T, R277G, A306V, A310T, V321A, V322I, A325V, I329F, H331N; nef: R8E, S9-, R21Q, E24G, P25I, N52T, D54S, C55L, Y81F, K82Q, A83G, L85W, Y102H, D108E, F139Y, E149D, E158A, R188S, H192R, D205N; p1: S8P, H9Y; p17: E12Q, K28R, R30K, L61I, G62A, K91R, E93K, D102E, A115V, Q127H; p2: T12N, M14L; p24: S41T, I91V, E180D, P207Q, A208G, T216S, V230I; p6: T23-, P25S, P30Q, L38S, S50L; p7: K41R; pro: K14R, N37D, K41R, I64V, V77I; rev: S31T, R53H, G57N, W58R, P72S, L73I, Q95R, T114A; tat: A21P, N24A, K29Y, S70P, T74A, P77H; vif: K22N, K36Q, K37R, V39I, D61E, T67I, T74A, K91E, N101H, Q105K, H127R, R132S, T151A, I154R, T159R, T167A, P177S, G185E, S186N, H187Q, N190S; vpr: A4I, Y15N, N28S, V37A, G41S, R85L, Q86R; vpu: L4E, V14L, A15V, S24T, I33T, L42I, E66G, -69V, -70E, -71M, -72G, D80A"}}}]}, {"name": "B_NODE_0000031", "node_attrs": {"div": 0.14575000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G3364A", "G3651A", "G5187A", "T5487C", "-6205T", "A6208C", "A6986-", "T6988-", "A6990-", "C7153T", "T8290C", "T8426G", "G8875A", "T8966C"], "RT-p66": ["S519N"], "gp120": ["E122-", "D384E"], "gp41": ["D109N", "R236P"], "nef": ["M182V"], "p24": ["N120S"], "vpu": ["L27F"]}, "labels": {"aa": "RT-p66: S519N; gp120: E122-, D384E; gp41: D109N, R236P; nef: M182V; p24: N120S; vpu: L27F"}}, "children": [{"name": "B_NODE_0000032", "node_attrs": {"div": 0.15671000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A380G", "A388G", "A424G", "A425G", "G485T", "G508A", "T534A", "G607A", "G614T", "G677A", "A697G", "G821A", "G980A", "G1078C", "A1090G", "G1160A", "C1253T", "C1362T", "A1397G", "T1452A", "C1478T", "C1490T", "A1793G", "T1864C", "T1978G", "A1982G", "G2230A", "C3023T", "G3046A", "A3096T", "C3225T", "G3250A", "G3385A", "C3436T", "G3439A", "G3442A", "G3925A", "C3940T", "T3976C", "T4042C", "A4148G", "G4376A", "C4501T", "G4696A", "C4726T", "A4782G", "A4860G", "C4919T", "C5086A", "T5102C", "T5424C", "G5433A", "C5569A", "G5599A", "T5626G", "T5627C", "-5813T", "-5814G", "-5815G", "-5816A", "-5818A", "-5820G", "-5821G", "-5822G", "-5823G", "A6092G", "T6202C", "-6204T", "A6251G", "G6261A", "A6263G", "A6304G", "C6318A", "G6463A", "T6511C", "G6647A", "A6767C", 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Y135F, E151D, Q170L; p17: K18R, E93D, D121G; p2: S10T; p24: G116A, E180D; pro: D60E, I62V, L63P; tat: H65N; vif: T47I, I66V, T167K; vpu: L7A"}}, "children": [{"name": "KT124785", "node_attrs": {"div": 0.21650000000000003, "accession": "KT124785", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2012.0}, "Strain_name": {"value": "608647"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "G369A", "G379A", "A412G", "G413A", "C467T", "C476T", "A491G", "A509G", "G519A", "G520T", "C536T", "A541C", "G542A", "A545G", "C558G", "A562G", "G608C", "A638G", "C641T", "A645G", "A666G", "G667C", "A674C", "A682C", "A699G", "T734G", "C827T", "A887G", "T978C", "T1003A", "T1004C", "C1040T", "C1060A", "G1067A", "A1097T", "C1118T", "C1137T", "T1148C", "C1175T", "C1220T", "C1230A", "A1250G", "T1334C", "A1382G", "G1404A", "G1419A", "T1421C", "G1443A", "G1455A", "G1474A", "G1499A", "A1500G", "C1501T", "G1503A", "T1511C", "A1526G", "C1541A", 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"P272A", "V292I", "V317A", "D324E", "F346H", "M357V", "K366R", "T377V", "Q394H", "T403A"], "RT-p66": ["V35M", "T39A", "S48T", "D177E", "T200I", "Q207E", "F214L", "V245E", "P272A", "V292I", "V317A", "D324E", "F346H", "M357V", "K366R", "T377V", "Q394H", "T403A", "K512Q", "L517I", "K530R", "V531I", "A534T", "A554N", "K558R", "V559I"], "gp120": ["D34E", "N52S", "E74D", "T104N", "-106V", "-107N", "N109S", "T112G", "S114G", "S115T", "-116T", "-117G", "-118N", "-119V", "-120T", "-121V", "-122S", "K123Q", "T134S", "S136Y", "I137E", "E144K", "L147Y", "I156V", "T161H", "S162T", "V180I", "S228T", "S246Y", "F249V", "N251D", "I257L", "E262D", "E265K", "N267D", "T269K", "S278G", "I281T", "R287K", "A288V", "F289V", "N304T", "S306N", "R307G", "A308T", "N311H", "K315R", "A318V", "K319V", "-326K", "N327S", "V332T", "Q335P", "S336P", "S337P", "S347T", "Q361K", "N369E", "S370-", "T371-", "N378-", "N379-", "-381G", "-382T", "M398R", "M406I", "S412A", "Q414P", "R416N", "N433-", "N435K", "E436T", "D446N", "R448K", "V468I", "K472R", "R480K"], "gp41": ["I4L", "Q66R", "A96T", "A101T", "S104N", "N109E", "D113N", "D129S", "T133S", "Q147L", "S157N", "I182V", "I193V", "F206L", "P216L", "E224G", "S235I", "P236R", "D239T", "L242S", "V247D", "A267V", "A268T", "V301I", "A310V", "R334T"], "nef": ["R8S", "-10M", "-11A", "V16I", "M20I", "R21K", "R22K", "A23T", "K39R", "I43L", "A49P", "A50T", "D54A", "E63D", "I101V", "Y102W", "V114M", "V133I", "C163S", "M168A", "S169C", "D174E", "K184R", "V194M", "L198K", "Y202F", "Y203F"], "p17": ["E12K", "R15K", "K26R", "R58K", "G62I", "S67T", "Q69P", "L75V", "K76R", "K91N", "I104V", "S111A", "K113N", "Q116P", "T122A"], "p2": ["V7I", "A11T"], "p24": ["I91N", "T110N", "G225S", "V230I"], "p6": ["S3N", "P5T", "T23-", "P25S", "I31M", "A39S", "S50*"], "p7": ["R3K", "T12V", "V13I", "K41R"], "pro": ["I13V", "L33F", "M36I", "N37S", "R57K", "I72L"], "rev": ["D9E", "L13I", "R17K", "S31T", "R53H", "S54K", "S56G", "G57D", "W58R", "D84N", "S86D", "S99G", "I102V", "V109I"], "tat": ["A21P", "N24K", "Y26H", "F32Y", "T39L", "S46F", "P59H", "T64A", "P77H", "P81S"], "vif": ["K33R", "R41K", "H48N", "A62N", "R90K", "R92G", "R93K", "N122K", "I124L", "H127N", "R132K", "K141Q", "K179E", "S186N"], "vpr": ["E6G", "T19A", "I63T"], "vpu": ["A15T", "V21I", "S24T", "F27A", "I28L", "R31K", "E66D", "M67R", "H74L", "V79I"]}, "labels": {"aa": "INT: E48G, K71Q, T97A, I113V, S119R, I135V, E157Q, K160Q, F181L, R269K; RT-p51: V35M, T39A, S48T, D177E, T200I, Q207E, F214L, V245E, P272A, V292I, V317A, D324E, F346H, M357V, K366R, T377V, Q394H, T403A; RT-p66: V35M, T39A, S48T, D177E, T200I, Q207E, F214L, V245E, P272A, V292I, V317A, D324E, F346H, M357V, K366R, T377V, Q394H, T403A, K512Q, L517I, K530R, V531I, A534T, A554N, K558R, V559I; gp120: D34E, N52S, E74D, T104N, -106V, -107N, N109S, T112G, S114G, S115T, -116T, -117G, -118N, -119V, -120T, -121V, -122S, K123Q, T134S, S136Y, I137E, E144K, L147Y, I156V, T161H, S162T, V180I, S228T, S246Y, F249V, N251D, I257L, E262D, E265K, N267D, T269K, S278G, I281T, R287K, A288V, F289V, N304T, S306N, R307G, A308T, N311H, K315R, A318V, K319V, -326K, N327S, V332T, Q335P, S336P, S337P, S347T, Q361K, N369E, S370-, T371-, N378-, N379-, -381G, -382T, M398R, M406I, S412A, Q414P, R416N, N433-, N435K, E436T, D446N, R448K, V468I, K472R, R480K; gp41: I4L, Q66R, A96T, A101T, S104N, N109E, D113N, D129S, T133S, Q147L, S157N, I182V, I193V, F206L, P216L, E224G, S235I, P236R, D239T, L242S, V247D, A267V, A268T, V301I, A310V, R334T; nef: R8S, -10M, -11A, V16I, M20I, R21K, R22K, A23T, K39R, I43L, A49P, A50T, D54A, E63D, I101V, Y102W, V114M, V133I, C163S, M168A, S169C, D174E, K184R, V194M, L198K, Y202F, Y203F; p17: E12K, R15K, K26R, R58K, G62I, S67T, Q69P, L75V, K76R, K91N, I104V, S111A, K113N, Q116P, T122A; p2: V7I, A11T; p24: I91N, T110N, G225S, V230I; p6: S3N, P5T, T23-, P25S, I31M, A39S, S50*; p7: R3K, T12V, V13I, K41R; pro: I13V, L33F, M36I, N37S, R57K, I72L; rev: D9E, L13I, R17K, S31T, R53H, S54K, S56G, G57D, W58R, D84N, S86D, S99G, I102V, V109I; tat: A21P, N24K, Y26H, F32Y, T39L, S46F, P59H, T64A, P77H, P81S; vif: K33R, R41K, H48N, A62N, R90K, R92G, R93K, N122K, I124L, H127N, R132K, K141Q, K179E, S186N; vpr: E6G, T19A, I63T; vpu: A15T, V21I, S24T, F27A, I28L, R31K, E66D, M67R, H74L, V79I"}}}, {"name": "KT427771", "node_attrs": {"div": 0.20963, "accession": "KT427771", "clade_membership": {"value": "B"}, "country": {"value": "BR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10BR_RJ067"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C150T", "A161C", "A213T", "G214A", "A216G", "A220G", "C233T", "A303T", "A304-", "A371C", "T422C", "T426C", "C456T", "T495C", "A507C", "G518A", "C535G", "A548G", "G579A", "A585G", "C586T", "A599G", "A619G", "A676G", "G709A", "C714A", "A715C", "G716A", "G743A", "C749T", "A779G", "T782A", "A803G", "T858C", "G944A", "G956T", "G989A", "A1002G", "A1007G", "A1025G", "T1091C", "A1142T", "T1181C", "C1211A", "T1244C", "C1245T", "A1259G", "T1280C", "G1301A", "G1394A", "A1412G", "A1415T", "A1449G", "A1450G", "G1455C", "A1458G", "G1487A", "A1543G", "A1545C", "C1658G", "G1661A", "T1676C", "G1697A", "A1701T", "A1715G", "A1736G", "A1765G", "A1781G", "C1782T", "G1794A", "G1804A", "C1826G", "C1828T", "A1839G", "A1867G", "A1918G", "C1996A", "A2002G", "G2027A", "C2044T", "G2074A", "T2080C", "T2087C", "A2119G", "A2155G", "T2199C", "T2257C", "T2269C", "C2296T", "C2356T", "T2383C", "C2386T", "A2446G", "T2449C", "A2459G", "T2476C", "G2509A", "A2524G", "C2533T", "A2579T", "T2653C", "G2681A", "G2682A", "C2684G", "A2727G", "A2743G", "T2806C", "A2839T", "G2869A", "A2881G", "G3053A", "A3097C", "A3115G", "T3165C", "C3178T", "A3224T", "C3232T", "G3264A", "C3266T", "A3280G", "A3293T", "C3294T", "C3346T", "A3400G", "G3427A", "G3431T", "A3454G", "T3497C", "C3499T", "T3505A", "T3551C", "G3562A", "T3628C", "A3631G", "A3637G", "A3676T", "C3692T", "C3712T", "A3715G", "G3737A", "C3751T", "C3773T", "A3805G", "A3824G", "T3826C", "A3839C", "G3841A", "A3868G", "A3890T", "C3892T", "C3908G", "A3961G", "A4021G", "G4051A", "G4060A", "A4063T", "C4146A", "G4150A", "G4187A", "A4243C", "A4246G", "G4268A", "C4318T", "A4319G", "G4354A", "G4464A", "G4467A", "T4537G", "A4564G", "T4585C", "A4625G", "G4631A", "A4650C", "A4652C", "T4672A", "A4677G", "G4684A", "T4691C", "G4694A", "A4711C", "A4721T", "A4725C", "T4769A", "G4778A", "A4781G", "A4819T", "G4835T", "A4858G", "G4861A", "C4890T", "T4891C", "T4912A", "A4966G", "T4967G", "A4968G", "G4975T", "T4976A", "A5021C", "T5028C", "C5034T", "A5059G", "A5061C", "G5066A", "G5093A", "G5167A", "G5179C", "T5209C", "A5213C", "C5221T", "T5224C", "G5225A", "A5233G", "G5246A", "A5248C", "G5267A", "A5278G", "G5279A", "A5336C", "G5363A", "A5432G", "C5444A", "C5445T", "T5466C", "G5482C", "T5483G", "T5492C", "G5548T", "T5576C", "T5577A", "T5578G", "C5579A", "A5607C", "C5614T", "C5620A", "C5639G", "A5640T", "C5654G", "G5668T", "C5679T", "A5680T", "A5702G", "A5703G", "T5707A", "T5708G", "G5711A", "G5717A", "A5746G", "G5747C", "T5778C", "-5800A", "-5804A", "-5805A", "-5806A", "-5807T", "-5809G", "-5810G", "-5812C", "-5817A", "-5819T", "C5827A", "C5862A", "A5863G", "A5869T", "A5896G", "A5907G", "A5911C", "C5916A", "A5947G", "G6023C", "C6052T", "T6085G", "C6115T", "G6121A", "A6131C", "-6171G", "-6172G", "A6174G", "-6175G", "-6180A", "A6182-", "C6183-", "T6184-", "A6185-", "A6186-", "T6187-", "-6203T", "T6205G", "A6206G", "-6207A", "-6211G", "G6217-", "G6218-", "A6219-", "G6220-", "C6247T", "G6280C", "A6286T", "A6371C", "A6420T", "A6456G", "T6457A", "T6460C", "A6465G", "G6466A", "C6483T", "T6487C", "A6514G", "A6532G", "A6535G", "A6574T", "A6589G", "T6637A", "G6638A", "A6640G", "T6641G", "A6649C", "A6654C", "A6659G", "C6660T", "A6684G", "A6693C", "G6712A", "G6725A", "T6745C", "A6753G", "C6758T", "A6779G", "A6781C", "C6790G", "A6797G", "A6812G", "-6830G", "-6831G", "-6832G", "A6855C", "T6888C", "G6889A", "A6935C", "A6957G", "-6968G", "-6977A", "-6978C", "-6979T", "-6980G", "-6981A", "-6983A", "-6984A", "-6985T", "-6986A", "-6988T", "-6989A", "-6990G", "T6994A", "A7000-", "A7001-", "A7002-", "T7003-", "C7008T", "A7021C", "A7027G", "A7037G", "A7057G", "A7090T", "A7095T", "A7100C", "T7106A", "A7129G", "T7147G", "A7148T", "A7149C", "T7159A", "C7164G", "C7170T", "G7232A", "A7261G", "A7300G", "T7308G", "A7322G", "G7324A", "G7450T", "A7458G", "T7462C", "C7463A", "G7513A", "A7532G", "A7533G", "T7555G", "A7627C", "G7628A", "A7666C", "G7676A", "G7688C", "G7689A", "C7690G", "A7713T", "A7714T", "G7717A", "G7720A", "A7733C", "A7744G", "G7745A", "A7750G", "C7770A", "A7771C", "T7775C", "T7783C", "G7846A", "T7867A", "A7868T", "T7888C", "T7913C", "C7931T", "T7932C", "A7953G", "G7965A", "A7977G", "A7988C", "T8008G", "G8010C", "G8050A", "G8061T", "C8065T", "T8097C", "T8112C", "T8153C", "G8158C", "A8163G", "C8218T", "C8220T", "G8255A", "G8264C", "G8274C", "T8279G", "C8286-", "T8287-", "A8288-", "T8289-", "C8290-", "C8291-", "T8292-", "C8293-", "C8294-", "A8295-", "C8296-", "A8297-", "T8298-", "A8299-", "C8300-", "C8301-", "T8302-", "A8303-", "A8305-", "A8306-", "G8307-", "A8308-", "A8309-", "T8310-", "A8311-", "A8312-", "A8316G", "G8317A", "G8319A", "C8320A", "T8322G", "A8327-", "G8328-", "G8329-", "G8330-", "C8331-", "T8332-", "T8333-", "T8334-", "G8335-", "C8336-", "T8337-", "A8338-", "T8366A", "-8371A", "T8375-", "G8377A", "G8412C", "A8420G", "G8432A", "C8440T", "A8455C", "C8460T", "C8467T", "A8469G", "C8488A", "C8495T", "G8499C", "G8506T", "T8507G", "G8517A", "A8533G", "C8552T", "A8555G", "A8580G", "C8581A", "T8595C", "T8596G", "A8597C", "C8607T", "A8608T", "A8636T", "A8655C", "C8688A", "C8720T", "C8741A", "G8753A", "T8757C", "A8797G", "A8815G", "C8828T", "A8886C", "T8887A", "T8913C", "C8957T", "C8971T", "C8992A", "C9017A", "T9019G", "T9029A"], "INT": ["S17G", "M22L", "S39C", "L45V", "E96D", "T124N", "E138K", "K156N", "V165I", "I182V", "S230N", "R231K", "N254K", "R284G", "D286N"], "RT-p51": ["V35A", "K122E", "S162C", "G196K", "Q197E", "K211R", "E248D", "D320N", "M357T", "T377L", "R390K", "T400L"], "RT-p66": ["V35A", "K122E", "S162C", "G196K", "Q197E", "K211R", "E248D", "D320N", "M357T", "T377L", "R390K", "T400L", "A446S", "S468P", "K527N", "V548I"], "gp120": ["T3K", "K5N", "K18R", "E19D", "T21N", "V57L", "H77Q", "K93Q", "-106N", "-107W", "N109D", "T112S", "N113T", "S115L", "-116D", "-117M", "S136D", "I137V", "Q142H", "E144D", "I173L", "Y189F", "N201R", "K204R", "P210L", "E240D", "N261K", "E262K", "S263A", "E265N", "N267T", "T269V", "K277R", "H280P", "A291T", "D294Q", "Q300R", "H302Y", "K309D", "N312K", "K315E", "V317I", "K320E", "-326G", "N327K", "-328N", "N334T", "M345T", "N368Q", "-372G", "N379S", "-381E", "-382N", "E384S", "I395V", "Q414L", "R416Q", "S418T", "N432S", "N433D", "N434G", "N435E", "T437S", "T439I", "V460I"], "gp41": ["V2L", "I4G", "M7V", "E49D", "Q52R", "L54M", "K77G", "I84M", "E121D", "D125N", "D129Q", "E137V", "K144Q", "E148K", "A156D", "F188L", "T189S", "L210S", "D217G", "G221E", "E225G", "S235R", "C253F", "L265S", "I270T", "Y284H", "W285C", "N287S", "A306V", "V318I", "V321L", "R324T", "F326V", "A328G", "I329R", "L330E", "H331W", "I332E"], "nef": ["-10K", "-11E", "G12-", "R22Q", "E24Q", "A33V", "E38A", "H40Y", "A42V", "I43V", "A49E", "A53P", "C55L", "E59K", "T80D", "L85R", "H89F", "E98D", "K105Q", "H116N", "F139L", "K152R", "E158G", "V182Q", "F191L"], "p1": ["H9Q"], "p17": ["E12D", "S54P", "R58Q", "V82I", "T84V", "K95R", "K114R", "S125N", "Q127T"], "p2": ["N9G", "A11P", "T12A"], "p24": ["E75D", "I91V"], "p6": ["T8S", "E29G", "A39T", "R42K", "S50L"], "p7": ["K26R", "N27H"], "pro": ["L10V", "K14R", "V77I"], "rev": ["E11D", "F21Q", "L22I", "P28L", "S31P", "E47A", "R53Q", "S54A", "A68T", "L73F", "I102A", "V104L"], "tat": ["K19R", "T23N", "V36R", "A58S", "V67A", "S68D", "S75P", "T82A", "E86K"], "vif": ["K22H", "M29K", "I31V", "H42P", "E45D", "I47L", "D61E", "D78V", "Q83H", "K91R", "R92E", "N101D", "L102S", "L109Q", "H127R", "I128V", "S130I", "T151A", "K158R", "T159P"], "vpr": ["E25D", "V37P", "G41S", "E48N", "A55T", "A59T", "Q77H"], "vpu": ["P3S", "Q5K", "A11G", "A16G", "V21F", "I25L", "K32R", "L34R", "R35K", "R37K", "R47A", "V65M", "-69H", "-70E", "-71M", "-72G", "H74N"]}, "labels": {"aa": "INT: S17G, M22L, S39C, L45V, E96D, T124N, E138K, K156N, V165I, I182V, S230N, R231K, N254K, R284G, D286N; RT-p51: V35A, K122E, S162C, G196K, Q197E, K211R, E248D, D320N, M357T, T377L, R390K, T400L; RT-p66: V35A, K122E, S162C, G196K, Q197E, K211R, E248D, D320N, M357T, T377L, R390K, T400L, A446S, S468P, K527N, V548I; gp120: T3K, K5N, K18R, E19D, T21N, V57L, H77Q, K93Q, -106N, -107W, N109D, T112S, N113T, S115L, -116D, -117M, S136D, I137V, Q142H, E144D, I173L, Y189F, N201R, K204R, P210L, E240D, N261K, E262K, S263A, E265N, N267T, T269V, K277R, H280P, A291T, D294Q, Q300R, H302Y, K309D, N312K, K315E, V317I, K320E, -326G, N327K, -328N, N334T, M345T, N368Q, -372G, N379S, -381E, -382N, E384S, I395V, Q414L, R416Q, S418T, N432S, N433D, N434G, N435E, T437S, T439I, V460I; gp41: V2L, I4G, M7V, E49D, Q52R, L54M, K77G, I84M, E121D, D125N, D129Q, E137V, K144Q, E148K, A156D, F188L, T189S, L210S, D217G, G221E, E225G, S235R, C253F, L265S, I270T, Y284H, W285C, N287S, A306V, V318I, V321L, R324T, F326V, A328G, I329R, L330E, H331W, I332E; nef: -10K, -11E, G12-, R22Q, E24Q, A33V, E38A, H40Y, A42V, I43V, A49E, A53P, C55L, E59K, T80D, L85R, H89F, E98D, K105Q, H116N, F139L, K152R, E158G, V182Q, F191L; p1: H9Q; p17: E12D, S54P, R58Q, V82I, T84V, K95R, K114R, S125N, Q127T; p2: N9G, A11P, T12A; p24: E75D, I91V; p6: T8S, E29G, A39T, R42K, S50L; p7: K26R, N27H; pro: L10V, K14R, V77I; rev: E11D, F21Q, L22I, P28L, S31P, E47A, R53Q, S54A, A68T, L73F, I102A, V104L; tat: K19R, T23N, V36R, A58S, V67A, S68D, S75P, T82A, E86K; vif: K22H, M29K, I31V, H42P, E45D, I47L, D61E, D78V, Q83H, K91R, R92E, N101D, L102S, L109Q, H127R, I128V, S130I, T151A, K158R, T159P; vpr: E25D, V37P, G41S, E48N, A55T, A59T, Q77H; vpu: P3S, Q5K, A11G, A16G, V21F, I25L, K32R, L34R, R35K, R37K, R47A, V65M, -69H, -70E, -71M, -72G, H74N"}}}]}, {"name": "B_NODE_0000033", "node_attrs": {"div": 0.14863, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G3814A", "G4150A", "G4174A", "G5167A", "C5356T", "C5614T", "A5622T", "-5804A", "-6175T", "-6203A", "-6214G", "-6215A", "A6335-", "T6337-", "-6995A", "-6999G", "G7628A", "T7691A", "C7939T", "G8010C", "G8170A", "T8227C", "G8267T", "G8323A", "A8367-", "G8368-"], "gp120": ["G124-", "M141L"], "gp41": ["L130I", "I135L", "R259H", "V322L"], "rev": ["A108T"], "tat": ["P77L"], "vpr": ["T84I"], "vpu": ["P3S", "Q5H"]}, "labels": {"aa": "gp120: G124-, M141L; gp41: L130I, I135L, R259H, V322L; rev: A108T; tat: P77L; vpr: T84I; vpu: P3S, Q5H"}}, "children": [{"name": "B_NODE_0000034", "node_attrs": {"div": 0.15675, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G369A", "A386G", "T534G", "A606G", "G980A", "A1089C", "C1169T", "C1403A", "G1486A", "G1562A", "A1588G", "A1714C", "G2074A", "C2296T", "T2365C", "G2518A", "C2671T", "C2942A", "A3027G", "G3307T", "G3473A", "G3477A", "T3567C", "G4642A", "G4701T", "G4735A", "A5046G", "A5085G", "A5159G", "T5197C", "T5209C", "A5233G", "G5257A", "A5362G", "T5471A", "C5563G", "C5579A", "G5668A", "T5707G", "G5711A", "A5781T", "-5806A", "-5809G", "-5810G", "G5845A", "A5861G", "A6186G", "G6195C", "G6201A", "-6212A", "C6318A", "G6349A", "G6379A", "G6451A", "G6578A", "A6595C", "T6599C", "A6605G", "G6634A", "A6669G", "C6692A", "A6693C", "C6800A", "A6803G", "-6981G", "-6989A", "-6990A", "C6991T", "-6997T", "-7004G", "-7005A", "-7006A", "T7150C", "T7622A", "G7712A", "C7742A", "G7846A", "A7912T", "G8079A", "G8255A", "G8276T", "A8363G", "G8409A", "A8597G", "G8870A", "A8947T"], "RT-p51": ["F214L", "L283I", "K311R", "E404D"], "RT-p66": ["F214L", "L283I", "K311R", "E404D", "D460N", "R461K", "L491S"], "gp120": ["-106L", "P155Q", "V242I", "F249L", "N251D", "H280T"], "gp41": ["S107T", "Q147K", "L210H", "V318I", "A325F"], "nef": ["S9F", "A23T", "E149D", "Y202F"], "p17": ["E12K", "R30K", "S67A", "K91G"], "p24": ["S120H"], "p6": ["E12A"], "p7": ["R7K", "K41R"], "rev": ["L22I", "R53Q"], "tat": ["F32Y", "Q63E", "S75T"], "vif": ["R50K", "I154V", "T159K", "T167A"], "vpr": ["T19A"], "vpu": ["I18L", "V21I", "L34V", "R35K", "E58D", "D80N"]}, "labels": {"aa": "RT-p51: F214L, L283I, K311R, E404D; RT-p66: F214L, L283I, K311R, E404D, D460N, R461K, L491S; gp120: -106L, P155Q, V242I, F249L, N251D, H280T; gp41: S107T, Q147K, L210H, V318I, A325F; nef: S9F, A23T, E149D, Y202F; p17: E12K, R30K, S67A, K91G; p24: S120H; p6: E12A; p7: R7K, K41R; rev: L22I, R53Q; tat: F32Y, Q63E, S75T; vif: R50K, I154V, T159K, T167A; vpr: T19A; vpu: I18L, V21I, L34V, R35K, E58D, D80N"}}, "children": [{"name": "MG196653", "node_attrs": {"div": 0.21137, "accession": "MG196653", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2012.0}, "Strain_name": {"value": "505_0049a.WG07"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "G394A", "A418G", "A419G", "A435T", "A494C", "G508A", "T516C", "G519A", "G520T", "A541C", "A557G", "T567G", "A584G", "G608T", "G614C", "G615A", "A617C", "A619G", "C641T", "A643G", "G644A", "G709A", "C713T", "C747G", "T748C", "G752A", "C773A", "C830T", "C926T", "T936C", "A959G", "T983C", "T992G", "G1005C", "T1052C", "C1103T", "A1115C", "C1118T", "C1137A", "C1229T", "C1253T", "G1328A", "A1337G", "G1346A", "T1409C", "T1421C", "A1442G", "A1445G", "A1450G", "G1455A", "C1456A", "A1458G", "A1461G", "A1464C", "A1488G", "A1489G", "A1493G", "A1496G", "G1499A", "C1501T", "G1508A", "T1511C", "C1541T", "A1543G", "G1552A", "T1559A", "A1586G", "G1589A", "A1602C", "T1610C", "G1619A", "A1660G", "G1663A", "A1664C", "G1720T", "C1721T", "T1722G", "G1726T", "T1728-", "T1729-", "T1730-", "G1734A", "A1743G", "C1752T", "A1781G", "G1784A", "T1790C", "G1804A", "C1826G", "G1840T", "G1858A", "T1873C", "A1993C", "A2002G", "A2059G", "C2075A", "G2198A", "A2200G", "T2206C", "A2210G", "G2230A", "A2242G", "A2293G", "G2343A", "A2399C", "A2404C", "A2406G", "T2440C", "T2449A", "T2453C", "C2464A", "C2467T", "T2497C", "T2499G", "G2602T", "T2608C", "G2683A", "A2713G", "A2734G", "T2737A", "T2770G", "T2779C", "A2818T", "A2842G", "A2929G", "G2969A", "G3004A", "A3010G", "C3067T", "A3079G", "G3094A", "A3124G", "G3125A", "G3127A", "G3158T", "G3162A", "A3192G", "G3250A", "T3253C", "A3258G", "A3268G", "A3280G", "A3283G", "A3302G", "G3340A", "C3358T", "A3364G", "C3436T", "A3484G", "T3497A", "T3517C", "T3566C", "A3568G", "A3595G", "T3644A", "G3664A", "C3665G", "C3688T", "G3694A", "A3706T", "A3718G", "T3721C", "G3755T", "C3823T", "G3841A", "T3904C", "T3909A", "C3922T", "A3961G", "T3976C", "G4057A", "A4076C", "A4093G", "A4111C", "G4183A", "G4252A", "G4267A", "T4276C", "C4321T", "G4351A", "T4412C", "T4426C", "A4561G", "C4576T", "T4579C", "A4643T", "T4674C", "G4684A", "G4696A", "A4697T", "T4702A", "C4715T", "G4723A", "C4761T", "G4764A", "C4786A", "G4802A", "G4835A", "A4858T", "G4864A", "C4889T", "C4890A", "C4919T", "T4976C", "G4982A", "A5005G", "C5006A", "A5007G", "A5008G", "G5013A", "G5037A", "A5049C", "C5050A", "A5059G", "C5062A", "G5066A", "A5069C", "G5087A", "G5093A", "A5112G", "G5185A", "C5221T", "C5227A", "A5355C", "G5359C", "A5360C", "C5361T", "C5398T", "C5444A", "C5445T", "T5457C", "T5492C", "A5494T", "C5551A", "C5552A", "T5576C", "T5577A", "T5578G", "A5607G", "C5611T", "A5612C", "T5616C", "T5617C", "C5620T", "T5624C", "A5632G", "A5659T", "T5670A", "G5673A", "C5679T", "A5685G", "T5687A", "C5727T", "G5730A", "T5739G", "A5748T", "C5795T", "-5800A", "-5805A", "-5807T", "T5829C", "C5862T", "A5869C", "A5908G", "T5956C", "C6007T", "G6023T", "G6028A", "A6044G", "C6067T", "A6073G", "C6116T", "-6171T", "-6172G", "-6180G", "A6185G", "C6190T", "-6204A", "-6207G", "C6208T", "T6210A", "-6211T", "-6213C", "G6214A", "-6216C", "G6217C", "G6225A", "G6227C", "A6232G", "G6261A", "A6263T", "A6275T", "G6277A", "G6284C", "T6298G", "A6319G", "T6325C", "A6330G", "A6333C", "C6336-", "C6340T", "G6392A", "A6415T", "C6446T", "G6466T", "C6483A", "A6484G", "A6489C", "T6564G", "A6574C", "A6584C", "G6593A", "A6594G", "A6602T", "G6604A", "C6612T", "G6631T", "T6641A", "G6644A", "G6647C", "A6706G", "G6714A", "A6723T", "A6753G", "A6757T", "G6774A", "C6777A", "A6778G", "A6779G", "A6781C", "A6785G", "T6787A", "A6788C", "A6789G", "C6792A", "A6797C", "A6810T", "A6811G", "G6819A", "A6820G", "A6835C", "T6838A", "A6840C", "T6846C", "G6848A", "T6849A", "C6850A", "A6854G", "C6857A", "T6860C", "C6861A", "C6862T", "T6863G", "A6868G", "G6894C", "A6913G", "A6937C", "A6947T", "G6948A", "T6953-", "G6954-", "G6955-", "A6956T", "A6957T", "T6958C", "A6971-", "T6973-", "A6974-", "T6976-", "-6977G", "-6978C", "-6979A", "-6980T", "-6982G", "-6983T", "-6984C", "-6985A", "-6986A", "-6988T", "-6996A", "-6998A", "A7000C", "A7002C", "C7008A", "-7009A", "C7020A", "C7024T", "A7033G", "A7037T", "A7066G", "G7072A", "G7089A", "A7102C", "T7105C", "G7126A", "T7130C", "T7153C", "T7159C", "G7162T", "A7169G", "C7170T", "G7182C", "A7186G", "A7216G", "T7217C", "G7256A", "G7291A", "A7313T", "T7370G", "A7373G", "A7396G", "C7463A", "G7631C", "G7660A", "C7678T", "C7684T", "C7701A", "G7726A", "A7733C", "A7747T", "G7773A", "A7799C", "C7801A", "C7843A", "C7874T", "A7880T", "G7885A", "T7932A", "C7941A", "A7962G", "G8050A", "G8055A", "G8061T", "C8071T", "G8105A", "T8121C", "T8145C", "C8146T", "C8149G", "A8152G", "T8159G", "C8165A", "G8173A", "T8182C", "G8204A", "C8223T", "G8254A", "G8264T", "A8266T", "T8279G", "A8323C", "G8329A", "G8354A", "T8355C", "G8356T", "-8364C", "T8366C", "T8369-", "-8370T", "-8371T", "-8373C", "-8374C", "G8377A", "A8378C", "C8382G", "G8388A", "A8425C", "C8451T", "T8477C", "T8483C", "G8490T", "T8492A", "A8503C", "G8534A", "A8555G", "A8584T", "T8603G", "C8640T", "C8690T", "G8789T", "G8795C", "A8796C", "G8798A", "G8805A", "C8825T", "G8858A", "G8882A", "A8886C", "T8887A", "G8924A", "C8967T", "T9074C", "C9078T", "G9095T"], "INT": ["M22I", "L45Q", "I101L"], "RT-p51": ["V35M", "T39A", "R83K", "K102Q", "K103N", "K104R", "D123E", "I135R", "E169D", "V292I", "E344K", "A355S", "R356K", "K366R", "K388R", "T403A"], "RT-p66": ["V35M", "T39A", "R83K", "K102Q", "K103N", "K104R", "D123E", "I135R", "E169D", "V292I", "E344K", "A355S", "R356K", "K366R", "K388R", "T403A", "S468T", "S491P", "L517I", "Q524E", "A554S"], "gp120": ["T3V", "K5N", "V57L", "N64D", "-107T", "S115N", "-116T", "-117T", "-118E", "-119E", "-120Q", "-121L", "-122T", "-124E", "E125Q", "I126M", "S136D", "I137L", "E144Q", "F148L", "D159G", "N160T", "T161-", "V180I", "K204N", "P210Q", "K212T", "L237R", "E240D", "I244L", "E247S", "T250S", "A253V", "Q259H", "S263T", "V264I", "E265Q", "N272S", "R287K", "Y290F", "Q300R", "R307K", "A308E", "K309D", "N311E", "N312R", "T313N", "K315Q", "Q316K", "K319M", "R322K", "-328K", "K329T", "I331T", "V332K", "N334D", "Q335K", "S336H", "S337A", "S347T", "Q361N", "S365Y", "W367-", "N368F", "-372A", "-373W", "-377S", "-381N", "-382S", "N383T", "T385K", "P389Q", "I395F", "M406I", "R412K", "R416S", "E436D", "T439V", "G443A", "V468I"], "gp41": ["I4L", "S23A", "L54M", "E110Q", "D129G", "T133N", "E137K", "K144Q", "E148D", "S157N", "N166Q", "L191F", "I193L", "P213Q", "E220G", "S251N", "C253F", "A268T", "L273P", "W286G", "L288I", "V301I", "T307I", "V321F", "F326V", "L340F"], "nef": ["W5L", "F9L", "-10P", "-11D", "G12-", "P14A", "V16I", "D28A", "A50S", "D54A", "Y81F", "E151D", "K152Q", "E155K", "V182Q"], "p1": ["K10R", "G11D"], "p17": ["R20Q", "K28R", "I34L", "R58K", "G62I", "Q69P", "L78V", "E93D", "V94I", "K95R", "K103R", "S125N"], "p2": ["N9S", "A11N", "T12A", "I13V", "M14L"], "p24": ["L6A", "H87Q", "A92P", "E128D", "L136M", "E180D"], "p6": ["S14I", "F15V", "R16M", "F17-", "E19K", "T22A", "P25S", "R42K"], "p7": ["N8G", "T12I", "K26R", "R29K", "M46L"], "pro": ["L10V", "K14N", "L63P", "E65D", "L93I"], "rev": ["L13I", "F21Q", "A68T", "S86N", "P100S", "Q101E", "I102V", "V104G", "S106Y", "V109I", "S112P"], "tat": ["T23N", "T40S", "P59N", "V67A", "S68D", "K85E"], "vif": ["R19N", "Y30H", "K37N", "V39Y", "S46N", "G60R", "T67K", "K91I", "R93K", "N101D", "L102I", "N140R", "K141G", "G143R", "T155Q", "K158R", "K176E"], "vpr": ["Q3R", "V37T", "I84L", "R85P", "Q86W"], "vpu": ["Q2S", "H5Y", "I6T", "I9V", "F27Y", "D44E", "R47S", "A63V", "V65M"]}, "labels": {"aa": "INT: M22I, L45Q, I101L; RT-p51: V35M, T39A, R83K, K102Q, K103N, K104R, D123E, I135R, E169D, V292I, E344K, A355S, R356K, K366R, K388R, T403A; RT-p66: V35M, T39A, R83K, K102Q, K103N, K104R, D123E, I135R, E169D, V292I, E344K, A355S, R356K, K366R, K388R, T403A, S468T, S491P, L517I, Q524E, A554S; gp120: T3V, K5N, V57L, N64D, -107T, S115N, -116T, -117T, -118E, -119E, -120Q, -121L, -122T, -124E, E125Q, I126M, S136D, I137L, E144Q, F148L, D159G, N160T, T161-, V180I, K204N, P210Q, K212T, L237R, E240D, I244L, E247S, T250S, A253V, Q259H, S263T, V264I, E265Q, N272S, R287K, Y290F, Q300R, R307K, A308E, K309D, N311E, N312R, T313N, K315Q, Q316K, K319M, R322K, -328K, K329T, I331T, V332K, N334D, Q335K, S336H, S337A, S347T, Q361N, S365Y, W367-, N368F, -372A, -373W, -377S, -381N, -382S, N383T, T385K, P389Q, I395F, M406I, R412K, R416S, E436D, T439V, G443A, V468I; gp41: I4L, S23A, L54M, E110Q, D129G, T133N, E137K, K144Q, E148D, S157N, N166Q, L191F, I193L, P213Q, E220G, S251N, C253F, A268T, L273P, W286G, L288I, V301I, T307I, V321F, F326V, L340F; nef: W5L, F9L, -10P, -11D, G12-, P14A, V16I, D28A, A50S, D54A, Y81F, E151D, K152Q, E155K, V182Q; p1: K10R, G11D; p17: R20Q, K28R, I34L, R58K, G62I, Q69P, L78V, E93D, V94I, K95R, K103R, S125N; p2: N9S, A11N, T12A, I13V, M14L; p24: L6A, H87Q, A92P, E128D, L136M, E180D; p6: S14I, F15V, R16M, F17-, E19K, T22A, P25S, R42K; p7: N8G, T12I, K26R, R29K, M46L; pro: L10V, K14N, L63P, E65D, L93I; rev: L13I, F21Q, A68T, S86N, P100S, Q101E, I102V, V104G, S106Y, V109I, S112P; tat: T23N, T40S, P59N, V67A, S68D, K85E; vif: R19N, Y30H, K37N, V39Y, S46N, G60R, T67K, K91I, R93K, N101D, L102I, N140R, K141G, G143R, T155Q, K158R, K176E; vpr: Q3R, V37T, I84L, R85P, Q86W; vpu: Q2S, H5Y, I6T, I9V, F27Y, D44E, R47S, A63V, V65M"}}}, {"name": "KF384808", "node_attrs": {"div": 0.21112999999999998, "accession": "KF384808", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2011.0}, "Strain_name": {"value": "ES22_27"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C8-", "T24A", "G53-", "C151T", "C152A", "G167A", "C227A", "A286G", "-305T", "G365C", "G379A", "A428G", "A458G", "G471C", "T495G", "A499G", "A512G", "G520A", "C536T", "C540A", "T549A", "A562G", "A571T", "T636C", "A692G", "C746T", "C747A", "C749G", "G770A", "A803T", "C902T", "A932G", "G944A", "C950T", "C1013G", "G1067A", "G1078A", "A1079C", "C1137T", "G1173T", "T1174C", "C1175T", "G1192A", "C1220T", "C1230A", "A1265C", "T1271G", "G1301A", "A1313G", "C1354G", "A1370C", "A1382T", "G1443A", "A1450C", "G1474A", "C1490T", "A1497G", "A1498G", "C1501A", "T1517C", "A1529G", "A1567G", "T1613C", "T1679C", "A1712G", "C1768A", "T1771C", "A1781T", "C1825T", "A1867G", "G1912A", "A1920G", "T1975C", "A1982G", "C1985A", "G2027A", "T2035C", "T2080G", "A2203C", "A2243G", "T2257C", "G2273A", "A2290G", "A2314G", "G2359T", "A2368G", "C2386A", "A2413G", "A2459G", "C2464T", "T2476C", "A2519G", "G2600C", "A2612C", "C2615G", "G2656A", "A2680T", "A2699G", "A2727G", "T2735C", "A2752G", "T2770C", "T2806C", "A2839G", "T2885C", "A2937G", "G2972A", "G3004T", "C3055T", "G3088A", "G3098A", "A3115G", "T3118A", "A3136G", "T3165G", "G3168A", "G3171A", "G3173A", "A3238G", "T3310C", "A3347C", "C3376T", "G3379A", "G3398A", "G3427A", "T3445C", "A3447G", "A3481G", "C3500A", "T3541C", "T3551C", "A3586T", "T3613A", "A3629C", "A3631G", "G3667A", "C3691T", "C3712T", "C3773T", "G3796A", "A3808G", "C3908T", "C3962T", "T3967C", "A3985G", "A3989G", "C3994T", "C4015T", "A4066G", "C4078A", "A4145G", "C4159A", "T4276G", "G4279A", "A4356G", "G4376A", "A4391T", "A4407G", "A4431G", "T4444C", "G4464A", "A4531G", "G4573A", "A4577C", "G4583C", "A4658G", "A4677G", "T4679G", "A4686G", "A4687G", "A4692C", "A4695G", "T4703A", "C4726G", "T4727G", "C4728A", "T4742C", "T4769C", "A4774G", "A4845G", "G4856A", "A4858G", "G4861A", "G4887A", "T4910C", "T4914C", "A4966G", "A4988T", "T5018C", "C5062G", "T5073C", "G5137A", "A5213G", "C5214T", "T5237C", "A5238T", "T5263A", "A5278G", "A5290G", "G5363A", "G5370T", "A5397C", "G5433A", "A5462G", "A5491T", "C5513T", "G5532A", "A5566G", "T5576A", "T5577C", "A5594G", "G5599A", "A5607C", "C5654G", "A5659C", "C5688T", "A5703G", "G5717A", "C5727A", "G5741A", "G5747T", "A5760G", "T5788C", "-5800G", "-5805G", "-5807G", "A5828T", "G5853A", "A5866G", "A5867-", "A5868-", "A5869-", "A5881G", "A5896T", "G5902A", "A5907G", "C5916A", "C5924T", "G5939A", "G5962A", "A5965G", "C6004T", "A6016G", "G6023A", "A6030G", "T6100C", "A6130G", "A6158C", "T6160G", "C6163T", "C6165A", "T6169G", "T6170G", "-6171C", "-6172A", "-6180T", "T6181C", "A6188G", "C6190A", "T6193A", "A6194C", "C6198A", "T6199C", "A6200G", "T6202C", "A6203C", "-6204C", "-6207A", "A6209T", "-6211A", "-6213A", "-6216A", "G6217T", "G6218A", "A6219T", "G6220T", "A6222G", "A6223T", "G6225C", "A6230G", "T6250C", "C6255G", "C6262A", "T6271A", "A6275G", "A6281G", "A6282G", "G6284A", "A6286C", "A6302C", "A6303T", "C6305G", "T6306A", "G6311A", "A6316G", "A6320G", "G6323A", "-6335A", "-6337C", "G6339A", "G6345T", "G6346A", "T6351G", "G6368A", "C6382T", "C6412T", "T6454C", "A6456G", "T6457A", "A6461C", "G6463C", "A6465T", "A6476T", "C6482A", "A6488G", "A6490C", "T6493G", "T6523C", "C6545T", "A6565G", "G6577A", "A6594C", "A6616G", "G6626A", "A6648T", "A6664G", "C6667A", "A6668G", "A6682G", "A6686G", "T6735A", "T6772C", "G6776A", "A6779C", "C6790A", "A6797T", "A6799T", "A6801T", "A6809C", "A6822G", "C6824A", "A6835T", "A6840G", "C6850T", "C6874T", "T6895C", "T6904C", "G6905A", "A6932T", "-6968T", "-6969G", "-6970G", "-6972A", "-6975A", "-6977A", "-6978A", "-6979C", "-6980A", "-6982T", "-6983A", "-6984T", "-6985T", "-6986T", "A6987G", "-6988G", "A6992G", "-6996C", "-6998C", "G6999A", "-7009T", "C7018T", "C7094G", "T7106G", "T7114C", "A7120T", "G7123A", "A7154G", "A7155G", "C7156G", "A7158G", "C7164G", "T7228C", "G7244A", "A7322G", "G7375A", "C7397A", "A7399G", "T7403C", "G7450T", "T7516C", "G7549A", "C7574A", "T7579C", "G7604A", "C7625T", "A7629C", "G7633T", "C7645T", "A7669T", "C7678A", "G7689A", "A7693T", "A7700T", "A7713C", "G7720A", "A7722C", "A7729G", "A7734T", "A7800G", "G7807A", "T7884C", "T7913A", "A7915G", "G7918A", "T7921C", "T7932G", "C7938G", "T7939A", "A7953T", "A7963C", "A7988C", "G7989A", "G7997A", "T8008A", "G8017A", "C8051T", "C8103T", "A8163G", "A8170C", "C8189T", "G8194A", "C8215T", "A8222G", "A8228G", "G8245A", "A8258G", "T8265G", "T8280G", "T8281C", "C8291T", "C8294A", "T8321G", "T8322C", "G8330C", "C8331T", "G8349A", "G8350A", "-8364A", "G8365A", "-8367T", "-8368T", "G8372-", "-8373T", "-8374T", "G8385A", "C8386G", "T8387A", "G8402A", "C8406A", "G8426A", "C8440T", "T8477A", "G8479A", "A8489G", "A8494C", "A8525G", "G8528A", "G8537A", "C8552T", "T8595C", "C8601A", "G8624T", "C8666G", "G8682A", "T8711C", "A8754T", "C8755G", "G8774A", "G8784T", "T8786A", "G8789C", "A8801G", "C8809T", "A8812C", "T8832C", "G8846A", "G8848A", "A8875G", "G8888A", "A8893G", "G8894A", "A8912C", "T8915C", "G8922A", "C8934A", "T8935A", "C8948T", "C8960A", "G8962A", "C8964G", "C8966-", "C8967-", "G8968-", "A8969-", "G8970-", "C8971-", "T8972-", "T8973-", "T8974-", "C8975-", "T8976-", "A8977-", "C8978-", "A8979-", "A8980-", "G8981-", "G8982-", "G8983-", "A8984-", "C8985-", "T8986-", "T8987-", "T8988-", "C8989-", "C8990-", "G8991-", "C8992-", "T8993-", "G8994-", "G8995-", "G8996-", "G8997-", "A8998-", "C8999-", "T9000-", "T9001-", "T9002-", "C9003-", "C9004-", "A9005-", "G9006-", "G9007-", "G9008-", "A9009-", "G9010-", "G9011-", "C9012-", "G9013-", "T9014-", "G9015-", "G9016-", "C9017-", "C9018-", "T9019-", "G9020-", "G9021-", "G9022-", "C9023-", "G9024-", "G9025-", "G9026-", "A9027-", "C9028-", "T9029-", "G9030-", "G9031-", "G9032-", "G9033-", "A9034-", "G9035-", "T9036-", "G9037-", "G9038-", "C9039-", "G9040-", "A9041-", "G9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "T9060-", "A9061-", "A9062-", "G9063-", "C9064-", "A9065-", "G9066-", "C9067-", "T9068-", "G9069-", "C9070-", "T9071-", "T9072-", "T9073-", "T9074-", "T9075-", "G9076-", "C9077-", "C9078-", "T9079-", "G9080-", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "G9095-", "G9096-", "T9097-", "T9098-", "A9099-", "G9100-", "A9101-", "C9102-", "C9103-", "A9104-", "G9105-", "A9106-", "T9107-", "C9108-", "T9109-", "G9110-", "A9111-", "G9112-", "C9113-", "C9114-", "T9115-", "G9116-", "G9117-", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-", "G9127-", "G9128-", "C9129-", "T9130-", "A9131-", "G9132-", "C9133-", "T9134-", "A9135-", "G9136-", "G9137-", "G9138-", "A9139-", "A9140-", "C9141-", "C9142-", "C9143-", "T9150G"], "INT": ["I72V", "T124A", "D167E", "Y194C", "V201I", "T206S", "K211R", "K219R", "S230N", "I268L", "D270H"], "RT-p51": ["E36D", "I50V", "V60I", "W88C", "K122E", "I142V", "E169Q", "K173Q", "Q174E", "I202V", "K211R", "K281R", "V293I", "G335S", "M357R", "R358K", "G359D", "A360T", "N418H", "V435I"], "RT-p66": ["E36D", "I50V", "V60I", "W88C", "K122E", "I142V", "E169Q", "K173Q", "Q174E", "I202V", "K211R", "K281R", "V293I", "G335S", "M357R", "R358K", "G359D", "A360T", "N418H", "V435I", "K451R", "L469I", "K512Q"], "gp120": ["T3A", "K5-", "K18R", "T21N", "D29N", "V57I", "E59G", "N102Q", "T104N", "D105E", "-107K", "N109I", "T110S", "N111A", "T112-", "N113-", "S114-", "S115-", "K123-", "I126V", "T134S", "S136G", "D139E", "L141V", "K143G", "E144N", "K150L", "L151D", "V153I", "I156V", "D157P", "S162N", "R164I", "I166R", "V172I", "N201R", "K203H", "K204M", "T208S", "P210T", "K212D", "N213K", "E247A", "V258I", "E265V", "N272G", "S278G", "D294K", "A308T", "K309Q", "N312K", "K315Y", "Q316M", "K319Q", "E323G", "Q324K", "-328N", "K329R", "G351R", "T360S", "Q361K", "-372W", "-373N", "-374N", "-375N", "-376S", "-377I", "N378W", "T380A", "-381T", "-382Q", "Q414E", "S418A", "N434G", "N435S", "T437S", "E464K"], "gp41": ["M7V", "V24I", "Q32K", "E49D", "L91I", "A101T", "N109T", "E110D", "K122N", "D125E", "T133S", "E137T", "N140T", "K144M", "N166S", "V194A", "L204M", "H210R", "A212G", "D217V", "E220D", "R229Q", "D232N", "S235R", "R250W", "A267V", "A281V", "N287S", "T307A", "I309V", "I319V", "V321G", "F326C", "L330F", "H331N", "L340A", "A343L"], "nef": ["G3N", "R8N", "-10F", "A15R", "M20I", "D28E", "A33V", "S45R", "S46N", "N51T", "L87I", "K94N", "D108E", "V114I", "T138C", "V148L", "A156V", "N157T", "M168I", "S169N", "K178R", "V182I", "K184R", "V194M", "L198K", "C206*"], "p17": ["R15K", "V46L", "S54A", "E55G", "G62E", "Q69K", "S72T", "K76R", "Y79F"], "p2": ["V7I", "N9T"], "p24": ["L6M", "G116D", "V148S", "R154K", "A208G", "E213D"], "p6": ["P30Q", "I31T", "E34D", "P49L"], "p7": ["R3K", "K11G", "T12N", "K34R"], "pro": ["K41R", "I62V", "L63T", "V77I"], "rev": ["G6E", "F21T", "S30R", "S31T", "E47A", "R50K", "S54T", "G57R", "A68V", "T108P", "T114I", "E116K"], "tat": ["R7S", "K29R", "T39L", "S46F", "T64A", "V67D", "S68Y", "T75A", "L77D", "T82S", "K85T"], "vif": ["R19K", "I31V", "K33R", "K34G", "K36Q", "K37G", "V39L", "T47R", "H48N", "K63R", "I87V", "K91R", "R92K", "Y110H", "H127R", "E134D", "T151A", "K159R", "R184K"], "vpr": ["Y45L", "Q86R", "A89S"], "vpu": ["A16G", "R37K", "D40E", "R45K", "R47I", "M67R", "H74L"]}, "labels": {"aa": "INT: I72V, T124A, D167E, Y194C, V201I, T206S, K211R, K219R, S230N, I268L, D270H; RT-p51: E36D, I50V, V60I, W88C, K122E, I142V, E169Q, K173Q, Q174E, I202V, K211R, K281R, V293I, G335S, M357R, R358K, G359D, A360T, N418H, V435I; RT-p66: E36D, I50V, V60I, W88C, K122E, I142V, E169Q, K173Q, Q174E, I202V, K211R, K281R, V293I, G335S, M357R, R358K, G359D, A360T, N418H, V435I, K451R, L469I, K512Q; gp120: T3A, K5-, K18R, T21N, D29N, V57I, E59G, N102Q, T104N, D105E, -107K, N109I, T110S, N111A, T112-, N113-, S114-, S115-, K123-, I126V, T134S, S136G, D139E, L141V, K143G, E144N, K150L, L151D, V153I, I156V, D157P, S162N, R164I, I166R, V172I, N201R, K203H, K204M, T208S, P210T, K212D, N213K, E247A, V258I, E265V, N272G, S278G, D294K, A308T, K309Q, N312K, K315Y, Q316M, K319Q, E323G, Q324K, -328N, K329R, G351R, T360S, Q361K, -372W, -373N, -374N, -375N, -376S, -377I, N378W, T380A, -381T, -382Q, Q414E, S418A, N434G, N435S, T437S, E464K; gp41: M7V, V24I, Q32K, E49D, L91I, A101T, N109T, E110D, K122N, D125E, T133S, E137T, N140T, K144M, N166S, V194A, L204M, H210R, A212G, D217V, E220D, R229Q, D232N, S235R, R250W, A267V, A281V, N287S, T307A, I309V, I319V, V321G, F326C, L330F, H331N, L340A, A343L; nef: G3N, R8N, -10F, A15R, M20I, D28E, A33V, S45R, S46N, N51T, L87I, K94N, D108E, V114I, T138C, V148L, A156V, N157T, M168I, S169N, K178R, V182I, K184R, V194M, L198K, C206*; p17: R15K, V46L, S54A, E55G, G62E, Q69K, S72T, K76R, Y79F; p2: V7I, N9T; p24: L6M, G116D, V148S, R154K, A208G, E213D; p6: P30Q, I31T, E34D, P49L; p7: R3K, K11G, T12N, K34R; pro: K41R, I62V, L63T, V77I; rev: G6E, F21T, S30R, S31T, E47A, R50K, S54T, G57R, A68V, T108P, T114I, E116K; tat: R7S, K29R, T39L, S46F, T64A, V67D, S68Y, T75A, L77D, T82S, K85T; vif: R19K, I31V, K33R, K34G, K36Q, K37G, V39L, T47R, H48N, K63R, I87V, K91R, R92K, Y110H, H127R, E134D, T151A, K159R, R184K; vpr: Y45L, Q86R, A89S; vpu: A16G, R37K, D40E, R45K, R47I, M67R, H74L"}}}]}, {"name": "B_NODE_0000035", "node_attrs": {"div": 0.15606, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C623T", "C707A", "G743A", "T788C", "A1090G", "T1100C", "C1229T", "C1556T", "G1673A", "A1736G", "C2075A", "T2542G", "T2788G", "G3065A", "T3165C", "T3433C", "C3500T", "C3649T", "A3989G", "A4148G", "A4455T", "T4976C", "A5059G", "T5260C", "G5359A", "A5446T", "A5447C", "-5807T", "T5826C", "G5842A", "G5963A", "C6067T", "-6212G", "-6216T", "A6222-", "A6223-", "G6224-", "C6247T", "G6260A", "G6329A", "A6333C", "A6623C", "T6745C", "A6751G", "A6773G", "A6929T", "A6957G", "T6958G", "G6963A", "A6987-", "C6991-", "-6997A", "-6998G", "T7165C", "C7170T", "A7177G", "G7256A", "G7291A", "G7339A", "A7373G", "G7508A", "G7589A", "T7642C", "C7658G", "G7720A", "C7801T", "C7906T", "G8055A", "A8275G", "T8277C", "T8280G", "C8293T", "G8365-", "C8406A", "G8453A", "G8654A", "G8739C", "T8740C", "G8805A", "A8886G", "G8888A", "A8893G", "G8924A"], "INT": ["I72V", "Y227F"], "RT-p51": ["D324N", "M357T"], "RT-p66": ["D324N", "M357T"], "gp120": ["N108G", "N160T", "I257L", "R307G", "-326K", "Q335H", "T359S", "T439I", "V468I"], "gp41": ["M7L", "V69I", "Q119E", "D129G", "S251N"], "nef": ["V133P", "E155K", "K184R"], "p17": ["K91R"], "pro": ["L93I"], "tat": ["N24S"], "vif": ["K158R"], "vpu": ["V79I"]}, "labels": {"aa": "INT: I72V, Y227F; RT-p51: D324N, M357T; RT-p66: D324N, M357T; gp120: N108G, N160T, I257L, R307G, -326K, Q335H, T359S, T439I, V468I; gp41: M7L, V69I, Q119E, D129G, S251N; nef: V133P, E155K, K184R; p17: K91R; pro: L93I; tat: N24S; vif: K158R; vpu: V79I"}}, "children": [{"name": "FJ496000", "node_attrs": {"div": 0.21147, "accession": "FJ496000", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2006.0}, "Strain_name": {"value": "CH77E_flA1"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C152-", "T200G", "T201C", "G224A", "C227T", "C281A", "A303T", "-305A", "G354A", "T396C", "A399C", "A417C", "A419G", "T479C", "G480A", "C503T", "A585G", "C586T", "T602C", "G608A", "C626T", "G644A", "A697C", "A706C", "C747A", "C749G", "A779G", "A785G", "A810G", "C830T", "A857T", "T983C", "A1002G", "C1040T", "A1050T", "A1074G", "A1097G", "C1103T", "A1133T", "C1136T", "G1139A", "A1142G", "T1143C", "G1160A", "C1169T", "G1173A", "T1174C", "C1182T", "C1211T", "T1244G", "C1253T", "G1256A", "G1268A", "T1271A", "A1313G", "C1316T", "A1337G", "G1346A", "T1358C", "A1382G", "G1394A", "C1406A", "A1418G", "T1427A", "A1446-", "C1447-", "A1448-", "T1452C", "G1455A", "C1456A", "A1458G", "G1495A", "A1498G", "G1499A", "G1503A", "G1508A", "A1536C", "A1543G", "T1610G", "T1613C", "G1619A", "C1656T", "A1657C", "G1687A", "A1715G", "A1738G", "T1771A", "T1791G", "G1794A", "T1888C", "A1903C", "G1906A", "A1908G", "G1912A", "C1985T", "C1986G", "A2056G", "G2074A", "T2101C", "T2171C", "T2209C", "A2231C", "A2233G", "A2289G", "C2296T", "A2297G", "C2326T", "G2341A", "A2350G", "T2365C", "A2368G", "T2369C", "A2396C", "A2403G", "T2431G", "T2449C", "C2452T", "G2456C", "A2459G", "A2461G", "A2592G", "C2626A", "G2630C", "T2631A", "C2635T", "A2637G", "G2663A", "A2665C", "G2710A", "C2720T", "G2725A", "G2728A", "C2857T", "C2863T", "T2917C", "G2921A", "C2942A", "A2950G", "A2951G", "C2960T", "G2995A", "C3002T", "G3019A", "C3023T", "A3028G", "A3043G", "G3099A", "G3127A", "A3130T", "T3139C", "C3140T", "G3162A", "C3175T", "A3217G", "G3221A", "C3222G", "C3223T", "A3247G", "A3249G", "G3250A", "A3286G", "G3334A", "G3385A", "G3398A", "A3435G", "G3439A", "G3490A", "A3502C", "G3520A", "T3530C", "T3602C", "A3646G", "G3664A", "C3665A", "G3667A", "A3676T", "C3688T", "C3691T", "T3757G", "G3766A", "G3825A", "A3877G", "T3970C", "T3991C", "A4025C", "A4027G", "T4042C", "A4145G", "C4195T", "A4231G", "T4234C", "G4294A", "G4394A", "A4407C", "C4475A", "T4477C", "G4495A", "C4529A", "C4569T", "G4642A", "A4643C", "T4656C", "A4677G", "T4679C", "A4683C", "A4693G", "G4701T", "T4742C", "A4751G", "G4778A", "C4786T", "T4805C", "A4857C", "G4861A", "G4862A", "A4863C", "C4871T", "G4887A", "G5010A", "T5028C", "G5037A", "C5050A", "C5062G", "A5085G", "C5091T", "G5131A", "T5206C", "A5213C", "C5221T", "C5222T", "G5225A", "A5233G", "T5286C", "T5327C", "C5361A", "A5362C", "G5363A", "G5382T", "A5385C", "C5398T", "T5415C", "T5442C", "C5487T", "T5492C", "G5548C", "C5551G", "C5563A", "C5569A", "T5576C", "T5577G", "T5578C", "T5584C", "T5600C", "C5602T", "A5603C", "C5620T", "C5630G", "A5659T", "T5677A", "T5687A", "T5707G", "G5730A", "A5734C", "G5747T", "A5751C", "T5778C", "A5781G", "A5784T", "A5790G", "-5800A", "-5805G", "-5806A", "-5809G", "-5810G", "A5840T", "T5852A", "A5861G", "A5867C", "C5884T", "A5896G", "C5922A", "C5949T", "T5964C", "A5983C", "T5986C", "T6024A", "A6092G", "T6109C", "A6142G", "-6171C", "-6172T", "A6176G", "A6177G", "-6180A", "C6183G", "A6186G", "T6187C", "C6189T", "C6190T", "A6191G", "A6192C", "G6195A", "C6198G", "T6202C", "-6204G", "T6205C", "-6207G", "C6208T", "A6209G", "T6210A", "-6211G", "-6213C", "A6215G", "G6218A", "G6220-", "A6221-", "G6225-", "A6232G", "C6253T", "A6275T", "G6280A", "A6327C", "-6335T", "-6337T", "G6339A", "C6340A", "G6349A", "T6445C", "G6451A", "T6457A", "G6463A", "A6481G", "T6493G", "G6525A", "T6541A", "A6544G", "G6604A", "T6637C", "G6638A", "A6639C", "A6648T", "T6652C", "T6655A", "C6660T", "A6661G", "A6668G", "A6669G", "C6673T", "A6682C", "-6697G", "A6703-", "C6707G", "G6710T", "G6711T", "A6718T", "T6722C", "G6731A", "T6747C", "A6753G", "C6766T", "A6767G", "C6777A", "A6779G", "A6781T", "C6790G", "A6798G", "A6799C", "G6802T", "A6803G", "C6807T", "A6809G", "A6811C", "A6835G", "T6856C", "A6859T", "C6874T", "G6894C", "G6910A", "T6925C", "A6926G", "A6935G", "A6936C", "A6937G", "T6952A", "T6964C", "-6968T", "-6969G", "-6970G", "-6972C", "A6974G", "-6975G", "-6996C", "A7007-", "C7008-", "C7020A", "G7055A", "C7094T", "A7096C", "G7101A", "A7102C", "G7123A", "C7127A", "A7154G", "C7156T", "A7158G", "G7162A", "A7189G", "G7190A", "G7197A", "G7235A", "G7307A", "G7309A", "A7322C", "G7324T", "T7325C", "G7390A", "A7532C", "G7549A", "A7572G", "C7574G", "C7605T", "A7627G", "T7630C", "G7640A", "C7651A", "G7660A", "G7676A", "C7690T", "G7712C", "A7713G", "A7722G", "T7813C", "G7846A", "A7873G", "G7885A", "A7912C", "A8006G", "G8007A", "T8008A", "C8010A", "A8011C", "A8019G", "A8029G", "G8030A", "A8032G", "C8033A", "A8036T", "C8044G", "G8061T", "G8070T", "C8080A", "G8105A", "G8114C", "G8144A", "T8155C", "T8164C", "A8172T", "C8218T", "G8219A", "C8221T", "C8223T", "T8265A", "T8281G", "A8288G", "C8290T", "C8294A", "G8304C", "-8364T", "-8365T", "-8367G", "-8368C", "G8372-", "T8375-", "T8387C", "A8425T", "G8436C", "G8446A", "A8455C", "C8488T", "G8490T", "A8516G", "A8527G", "T8568G", "T8595C", "A8597T", "A8655C", "C8661A", "C8666T", "C8688A", "A8701T", "T8708C", "C8720T", "A8746T", "C8771T", "A8796G", "A8801G", "T8832C", "T8860C", "G8870A", "T8887C", "T8918G", "G8933A", "C8934A", "G8936A", "A8947T", "G8955A", "T8974C", "C8975T", "T8976G", "G9007A", "A9009G", "G9016A", "C9018A", "G9042A", "T9068C", "T9075-", "G9095T", "T9115C", "G9132A"], "INT": ["S17N", "I84L", "T124A", "T125A", "D207N", "K211T", "L234I", "Q252K", "A265V"], "RT-p51": ["K46Q", "K65R", "S68G", "K101Q", "K103R", "D121H", "K122E", "K166R", "D177E", "V179H", "Y181C", "G190S", "V276I", "L283I", "T286A", "G335D", "R356K", "A376S", "K385R", "V435I"], "RT-p66": ["K46Q", "K65R", "S68G", "K101Q", "K103R", "D121H", "K122E", "K166R", "D177E", "V179H", "Y181C", "G190S", "V276I", "L283I", "T286A", "G335D", "R356K", "A376S", "K385R", "V435I", "N447S", "L469F", "Q524K", "K527N"], "gp120": ["T3A", "K5Q", "T23N", "A32V", "V37T", "V57E", "I80V", "-106S", "-107N", "N109D", "T110S", "N111S", "T112I", "-116S", "-117S", "-118E", "-119A", "-120V", "-121K", "-122E", "K123M", "E125-", "I126-", "N158T", "D159K", "T161N", "S162T", "Y163S", "R164K", "N201K", "N213K", "R224K", "E262T", "E265V", "N267K", "T269M", "N272G", "R276S", "I281M", "P285A", "G286L", "Y290H", "A291T", "T292S", "G293R", "D294I", "I298T", "Q300R", "I305V", "A308E", "K309D", "N312K", "K315S", "Q316H", "A318V", "K319D", "S347T", "N358D", "Q361A", "N368R", "N369R", "S370-", "T371-", "-381W", "-382T", "N383G", "E384T", "P389Q", "E401K", "Q414Y", "R416N", "L425I", "N434D", "N435S", "D446N", "R448K", "V461I"], "gp41": ["V2I", "F8L", "K77Q", "K90R", "L91V", "A96T", "A101V", "D113N", "D125N", "E137R", "N140S", "S235E", "P236H", "D239G", "A243T", "L244I", "I245F", "C253F", "S256I", "H259R", "A268T", "V271L", "A281I", "Q290L", "A306T", "T307I", "V321E", "F326W", "I329V", "H331N", "R334T"], "nef": ["R8F", "S9A", "D28V", "A32P", "R35Q", "E38A", "A49V", "A50S", "L76V", "K105Q", "Q107K", "H116N", "Y120F", "Y135F", "K152E", "M173T", "V182A", "H192Q", "L198I", "Y202F"], "p1": ["H9S"], "p17": ["V7I", "K28Q", "R30K", "G49S", "T84V", "D121A", "N124T"], "p2": ["T8N", "N9P", "S10N", "T12-"], "p24": ["L6M", "I27V", "I91V", "T107S", "I115V", "V148T"], "p6": ["S3N", "E20G", "I31K", "L38V", "A39T"], "p7": ["R10K", "K11R", "V13I", "I24L", "K26R", "D48E"], "pro": ["E35D", "M36I", "N37S", "L63C"], "rev": ["E11D", "F21R", "S54T", "I55L", "S61D", "T62D", "Y63F", "R66G", "Q74H", "L78I", "S86N", "C89S", "S99N", "S106P"], "tat": ["E2D", "A58P", "P59A", "Q63K", "H65N", "V67A", "S68P", "S70P"], "vif": ["R19N", "I31V", "K33R", "K36R", "K37R", "V39F", "T67I", "K91Q", "R92K", "V142I", "T155K", "T159R", "T167A", "G182D"], "vpr": ["V37P", "H40Y", "G41S", "I61T", "R85Q", "Q86T", "A93S", "S94R"], "vpu": ["H5Y", "A8G", "I18L", "S24T", "F27Y", "L34V", "I43L", "R47I", "E48D", "V65M", "D78V", "L82Q"]}, "labels": {"aa": "INT: S17N, I84L, T124A, T125A, D207N, K211T, L234I, Q252K, A265V; RT-p51: K46Q, K65R, S68G, K101Q, K103R, D121H, K122E, K166R, D177E, V179H, Y181C, G190S, V276I, L283I, T286A, G335D, R356K, A376S, K385R, V435I; RT-p66: K46Q, K65R, S68G, K101Q, K103R, D121H, K122E, K166R, D177E, V179H, Y181C, G190S, V276I, L283I, T286A, G335D, R356K, A376S, K385R, V435I, N447S, L469F, Q524K, K527N; gp120: T3A, K5Q, T23N, A32V, V37T, V57E, I80V, -106S, -107N, N109D, T110S, N111S, T112I, -116S, -117S, -118E, -119A, -120V, -121K, -122E, K123M, E125-, I126-, N158T, D159K, T161N, S162T, Y163S, R164K, N201K, N213K, R224K, E262T, E265V, N267K, T269M, N272G, R276S, I281M, P285A, G286L, Y290H, A291T, T292S, G293R, D294I, I298T, Q300R, I305V, A308E, K309D, N312K, K315S, Q316H, A318V, K319D, S347T, N358D, Q361A, N368R, N369R, S370-, T371-, -381W, -382T, N383G, E384T, P389Q, E401K, Q414Y, R416N, L425I, N434D, N435S, D446N, R448K, V461I; gp41: V2I, F8L, K77Q, K90R, L91V, A96T, A101V, D113N, D125N, E137R, N140S, S235E, P236H, D239G, A243T, L244I, I245F, C253F, S256I, H259R, A268T, V271L, A281I, Q290L, A306T, T307I, V321E, F326W, I329V, H331N, R334T; nef: R8F, S9A, D28V, A32P, R35Q, E38A, A49V, A50S, L76V, K105Q, Q107K, H116N, Y120F, Y135F, K152E, M173T, V182A, H192Q, L198I, Y202F; p1: H9S; p17: V7I, K28Q, R30K, G49S, T84V, D121A, N124T; p2: T8N, N9P, S10N, T12-; p24: L6M, I27V, I91V, T107S, I115V, V148T; p6: S3N, E20G, I31K, L38V, A39T; p7: R10K, K11R, V13I, I24L, K26R, D48E; pro: E35D, M36I, N37S, L63C; rev: E11D, F21R, S54T, I55L, S61D, T62D, Y63F, R66G, Q74H, L78I, S86N, C89S, S99N, S106P; tat: E2D, A58P, P59A, Q63K, H65N, V67A, S68P, S70P; vif: R19N, I31V, K33R, K36R, K37R, V39F, T67I, K91Q, R92K, V142I, T155K, T159R, T167A, G182D; vpr: V37P, H40Y, G41S, I61T, R85Q, Q86T, A93S, S94R; vpu: H5Y, A8G, I18L, S24T, F27Y, L34V, I43L, R47I, E48D, V65M, D78V, L82Q"}}}, {"name": "AY561238", "node_attrs": {"div": 0.20234000000000002, "accession": "AY561238", "clade_membership": {"value": "B"}, "country": {"value": "CO"}, "date": {"value": 2001.0}, "Strain_name": {"value": "PCM034"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "A368T", "A386G", "A388G", "A414G", "A424G", "C467T", "A491G", "T516C", "G520A", "T567A", "A576T", "C577T", "A585T", "C586G", "A604G", "A645G", "G677A", "G687A", "C710T", "A711G", "C746T", "C749T", "G752A", "A803G", "G911A", "A986G", "T1003C", "A1025G", "A1073G", "C1098G", "A1208G", "C1245T", "G1328A", "A1349G", "A1400G", "T1444C", "A1475G", "T1511C", "C1541A", "A1560C", "C1615G", "A1664G", "T1679C", "T1682C", "A1691G", "A1714C", "G1726A", "G1804A", "A1852G", "A1920G", "C1986T", "C1987T", "C1996T", "G2027A", "T2071C", "T2092C", "G2230A", "G2246A", "A2260G", "G2273A", "A2293G", "G2392A", "G2428A", "G2470A", "G2518A", "C2533T", "A2545G", "C2584T", "C2714G", "C2777T", "T2779G", "T2829A", "G2878A", "G2887A", "C2908T", "C2941T", "T3045C", "G3046A", "T3059A", "G3091A", "A3154G", "A3164G", "G3166A", "A3238G", "G3264A", "A3293T", "A3316G", "C3376T", "C3394A", "A3400G", "A3406G", "G3431T", "G3442A", "T3497C", "C3504A", "G3529A", "C3542T", "A3651G", "T3668C", "A3703C", "A3787G", "A3808G", "C3823T", "G3866A", "A3964G", "G3983A", "A3985G", "G4060A", "A4076C", "T4079C", "T4085C", "A4107G", "A4112G", "C4138T", "C4149T", "T4153G", "G4176A", "C4210T", "A4333G", "G4335A", "A4338G", "T4412C", "C4475G", "C4501T", "T4534A", "T4606C", "G4636A", "A4652C", "G4673A", "T4674C", "G4684A", "G4694C", "G4696A", "C4728A", "C4771A", "A4782G", "A4817G", "T4826C", "G4835C", "G4856A", "A4860G", "G4864A", "A4888G", "T4910C", "T4952A", "C4965T", "T4969G", "A4988T", "A5090G", "A5122G", "G5123A", "A5134G", "A5155G", "G5176A", "T5197C", "G5212T", "A5230G", "G5256A", "G5267A", "A5277G", "A5282T", "T5292C", "A5335G", "T5354C", "A5375G", "A5431C", "G5437C", "C5478T", "C5495A", "A5496C", "A5574G", "A5637G", "C5654T", "G5718A", "A5720G", "A5751G", "G5775A", "A5784G", "A5787T", "T5788-", "T5789-", "A5790-", "T5791-", "C5792-", "A5793-", "G5794-", "C5795-", "A5796-", "T5798A", "T5799G", "-5800G", "T5801A", "-5805A", "-5806C", "G5808A", "-5809C", "-5810T", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820A", "-5821G", "-5822G", "-5823G", "A5828T", "G5837A", "G5838A", "A5866C", "T5887C", "T5899G", "C5916A", "G5954A", "A5955G", "T5964A", "C5980T", "C5989T", "C6052T", "T6134C", "-6171A", "-6172G", "-6180C", "G6201A", "-6204A", "A6206G", "-6207C", "T6210C", "-6211T", "-6213T", "A6219G", "A6226C", "A6248T", "A6263C", "T6276C", "G6277A", "C6278A", "T6287A", "A6304C", "G6311A", "T6315A", "A6330T", "T6334-", "C6336-", "A6338-", "G6339-", "A6388C", "T6395A", "T6418C", "T6457C", "G6458A", "T6460C", "A6464G", "A6484G", "A6489C", "C6559T", "A6574C", "G6575A", "G6577C", "G6578C", "T6613A", "A6628G", "A6640C", "A6679G", "A6810C", "A6818G", "C6824A", "A6825T", "T6849C", "A6855C", "A6859C", "A6913G", "A6935C", "C6938T", "A6956T", "A6960G", "A6965-", "C6966-", "T6967-", "A6971G", "-6972G", "-6975C", "-6977C", "-6978A", "-6979G", "-6980T", "-6981G", "-6982G", "A6992-", "C6993-", "T6994-", "-6996A", "-7004A", "-7005G", "-7006C", "-7009A", "A7010C", "A7037T", "A7040G", "A7090C", "T7105C", "A7151G", "A7152G", "A7155C", "A7158C", "G7162T", "A7163G", "C7164A", "G7281A", "A7313C", "A7322T", "G7331A", "G7441A", "G7450T", "C7489T", "A7504G", "G7517A", "T7555A", "T7561A", "G7568A", "C7590A", "G7604A", "G7660T", "A7668G", "G7670C", "A7711G", "G7726A", "G7759A", "T7789C", "G7790A", "A7791G", "C7792T", "A7820C", "A7847G", "G7862A", "T7879C", "T7913A", "T7921G", "T7932G", "T7968C", "A7988C", "C8005A", "G8018A", "A8019C", "C8026A", "C8031A", "T8035C", "G8050A", "C8065T", "C8071T", "A8076G", "G8079A", "G8126A", "A8128G", "C8129A", "G8130C", "G8144C", "G8204A", "T8206C", "C8213T", "C8227A", "G8243A", "G8244A", "G8253A", "G8254A", "G8264A", "A8269G", "T8279G", "A8288T", "G8317A", "A8323C", "G8330A", "C8331G", "G8345A", "G8354A", "T8366-", "T8369-", "-8370T", "-8371T", "-8373A", "-8374G", "G8376A", "G8392A", "G8402A", "G8409A", "G8426T", "G8427A", "G8428A", "G8432A", "A8441T", "A8457G", "A8461G", "A8469T", "C8471A", "G8476C", "G8490C", "C8491A", "C8495T", "T8501A", "A8503C", "C8514G", "G8534A", "G8537A", "G8540A", "G8554C", "A8555G", "T8595G", "C8640A", "A8642G", "A8643G", "T8645A", "A8647G", "C8648G", "C8651T", "A8657G", "G8659A", "T8675C", "G8682A", "G8784C", "G8789T", "G8795C", "A8796C", "T8813C", "T8829A", "G8846A", "A8847T", "G8856A", "G8861A", "G8880A", "T8881C", "G8882A", "T8914G", "C8921T", "C8928A", "G8929A", "A8932T", "C8948T", "C8967T", "G8970A", "G8981A", "C8992T", "G8994A", "G8995A", "G9010A", "C9012T", "T9029C", "G9032A", "G9040A", "T9074C", "G9085A", "G9116A"], "INT": ["V31I", "G70R", "I101L", "K111R", "I113V", "T125V", "G134E", "R187K", "K188R", "L234V", "D253E"], "RT-p51": ["G51R", "V60I", "Q207E", "V245E", "V317A", "S322T", "T357A", "R390K", "T400S"], "RT-p66": ["G51R", "V60I", "Q207E", "V245E", "V317A", "S322T", "T357A", "R390K", "T400S", "A446S", "S468P", "T470N", "H483Y", "N519S"], "gp120": ["E4D", "T21N", "D34S", "V37K", "-106Y", "-107H", "K123-", "N132Y", "I137L", "L141T", "Q142K", "Y145N", "K150N", "V153I", "V154E", "D159I", "T161-", "S162-", "S181T", "D202N", "K204E", "K212T", "E240D", "E241N", "V242L", "E262D", "D294S", "V317I", "K319T", "R322G", "Q324I", "V332A", "N334T", "N368W", "-372L", "-373P", "-374E", "-375N", "-376V", "N378-", "N379-", "T380-", "N383-", "E384-", "T385-", "I386-", "I395F", "I396V", "R412S", "N432A", "N434G", "N435T", "E436T", "T437D", "R476K"], "gp41": ["I4L", "G10R", "E49D", "V72M", "G89R", "A96N", "A101T", "E119D", "K122R", "E123Q", "D163S", "I173L", "I182V", "V187I", "L204I", "F206L", "L210R", "I222T", "D239T", "F241L", "A243E", "H258R", "G275R", "R276T", "A281L", "V301I", "L304F", "G314K", "R317K", "V321I", "F326G", "I329F", "L340F", "A343S"], "nef": ["M1I", "R8L", "-10R", "G12-", "R17K", "M20I", "A23T", "G29K", "K39E", "H40R", "I43L", "S45T", "A50H", "D54A", "L58V", "R71T", "L85V", "L100M", "I101V", "Y102W", "R106K", "V114I", "V148L", "E149D", "E151D", "K152Q", "C163S", "M168I", "S169C", "G172R", "M173I", "V180T", "F191C", "R196K", "E197V"], "p17": ["K18R", "K27E", "G62E", "L78I", "T81L", "T84C", "Q90R", "I104V", "A118T", "N124K", "S126G"], "p2": ["V7A"], "p24": ["I91T", "P123A", "E180D"], "p6": ["E12A", "R16K", "R42K"], "p7": ["T50S"], "pro": ["K41R", "V77I"], "rev": ["K20R", "E47A", "R53K", "G57D", "L60I", "S61R", "Y63H", "A68T", "L73F", "G93E", "T94D", "S99T"], "tat": ["K19Q", "A21P", "T39I", "T40N", "S75A", "S87P"], "vif": ["V7A", "R17K", "K22N", "M29I", "Y30H", "K36N", "H48N", "A62D", "I66V", "Q83H", "R92G", "R93K", "N101G", "N122K", "H127Y", "I128R", "E134D", "T151A", "K179R", "H183R", "N190S"], "vpr": ["D7N", "R36S", "V37T", "G51E", "A55T", "E58G", "I60L", "I63T", "Q77R", "I84Q", "R85I"], "vpu": ["A16V", "K38R", "E60D", "L61Q", "S62E", "A63E", "V65L", "E66-", "M67-", "G68-", "-69V", "-70E", "-71I", "-72G", "H74L", "W77*"]}, "labels": {"aa": "INT: V31I, G70R, I101L, K111R, I113V, T125V, G134E, R187K, K188R, L234V, D253E; RT-p51: G51R, V60I, Q207E, V245E, V317A, S322T, T357A, R390K, T400S; RT-p66: G51R, V60I, Q207E, V245E, V317A, S322T, T357A, R390K, T400S, A446S, S468P, T470N, H483Y, N519S; gp120: E4D, T21N, D34S, V37K, -106Y, -107H, K123-, N132Y, I137L, L141T, Q142K, Y145N, K150N, V153I, V154E, D159I, T161-, S162-, S181T, D202N, K204E, K212T, E240D, E241N, V242L, E262D, D294S, V317I, K319T, R322G, Q324I, V332A, N334T, N368W, -372L, -373P, -374E, -375N, -376V, N378-, N379-, T380-, N383-, E384-, T385-, I386-, I395F, I396V, R412S, N432A, N434G, N435T, E436T, T437D, R476K; gp41: I4L, G10R, E49D, V72M, G89R, A96N, A101T, E119D, K122R, E123Q, D163S, I173L, I182V, V187I, L204I, F206L, L210R, I222T, D239T, F241L, A243E, H258R, G275R, R276T, A281L, V301I, L304F, G314K, R317K, V321I, F326G, I329F, L340F, A343S; nef: M1I, R8L, -10R, G12-, R17K, M20I, A23T, G29K, K39E, H40R, I43L, S45T, A50H, D54A, L58V, R71T, L85V, L100M, I101V, Y102W, R106K, V114I, V148L, E149D, E151D, K152Q, C163S, M168I, S169C, G172R, M173I, V180T, F191C, R196K, E197V; p17: K18R, K27E, G62E, L78I, T81L, T84C, Q90R, I104V, A118T, N124K, S126G; p2: V7A; p24: I91T, P123A, E180D; p6: E12A, R16K, R42K; p7: T50S; pro: K41R, V77I; rev: K20R, E47A, R53K, G57D, L60I, S61R, Y63H, A68T, L73F, G93E, T94D, S99T; tat: K19Q, A21P, T39I, T40N, S75A, S87P; vif: V7A, R17K, K22N, M29I, Y30H, K36N, H48N, A62D, I66V, Q83H, R92G, R93K, N101G, N122K, H127Y, I128R, E134D, T151A, K179R, H183R, N190S; vpr: D7N, R36S, V37T, G51E, A55T, E58G, I60L, I63T, Q77R, I84Q, R85I; vpu: A16V, K38R, E60D, L61Q, S62E, A63E, V65L, E66-, M67-, G68-, -69V, -70E, -71I, -72G, H74L, W77*"}}}]}]}]}]}]}, {"name": "B_NODE_0000036", "node_attrs": {"div": 0.14121, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G677A", "A2727G", "G2972A", "A5085G", "C5214T", "A5233G", "T5237C", "A5447C", "-5804A", "-6171T", "A6192C", "T6202C", "A6206-", "A6489C", "-6984C", "-6985A", "A7398T", "A7668G", "T8227C", "-8371T", "-8373G", "A8886G"], "RT-p51": ["K211R", "V293I"], "RT-p66": ["K211R", "V293I"], "gp120": ["-106V", "N109-", "-117G", "D294E"], "gp41": ["Q32L"], "nef": ["M182V"], "p7": ["K26R"], "rev": ["P67S"], "vif": ["T167A"], "vpr": ["Y45H"]}, "labels": {"aa": "RT-p51: K211R, V293I; RT-p66: K211R, V293I; gp120: -106V, N109-, -117G, D294E; gp41: Q32L; nef: M182V; p7: K26R; rev: P67S; vif: T167A; vpr: Y45H"}}, "children": [{"name": "B_NODE_0000037", "node_attrs": {"div": 0.14297, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G265A", "A571T", "A585G", "C586T", "A4076C", "G5187A", "C5356T", "-5800G", "-5806A", "-5807T", "-5809G", "-5810G", "C6340T", "G6466A", "G6647C", "-6975C", "-6980G", "-6982G", "-6995G", "A7152G", "C7939A", "C8033A", "T8035C", "C8590G"], "INT": ["I101L"], "gp120": ["E265Q", "K319S"], "gp41": ["L244I"], "nef": ["A83G"], "p17": ["Y79F", "T84V"], "rev": ["P31T", "T62N", "Y63H"], "vif": ["T151A"], "vpr": ["T84I"]}, "labels": {"aa": "INT: I101L; gp120: E265Q, K319S; gp41: L244I; nef: A83G; p17: Y79F, T84V; rev: P31T, T62N, Y63H; vif: T151A; vpr: T84I"}}, "children": [{"name": "B_NODE_0000038", "node_attrs": {"div": 0.15029, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G607A", "A774C", "C926T", "G1078C", "C1354G", "A1543G", "A1715G", "A1745-", "G2422A", "T2829A", "A2925G", "A3238G", "G3477A", "A3808C", "T3928C", "C4146A", "G4174A", "G4267A", "T4412C", "A4677G", "T4976A", "A5059G", "T5062G", "G5143A", "A5186C", "C5447A", "T5470C", "A5493G", "C5495A", "C5552A", "T5576A", "T5686C", "A5781C", "A5787T", "T5788C", "G5842A", "G5954A", "A6009G", "G6023C", "-6175G", "-6180A", "-6212A", "-6213T", "-6214A", "-6216T", "-6217G", "A6275G", "G6329A", "A6330G", "G6525A", "-6703A", "-6830A", "T6838A", "A6840C", "G6848A", "-6957T", "-6972G", "-6973T", "-6977G", "-6981G", "-6996A", "-6997A", "-6998G", "-6999G", "A7007-", "C7008-", "C7045T", "A7151G", "A7279G", "G7375A", "G7552A", "C7678T", "G7688A", "C7702T", "A7915G", "G8007C", "G8170A", "G8173A", "T8218C", "G8280A", "A8288G", "C8291A", "T8369-", "A8469C", "G8588A", "G8805A", "T8887A", "C8934A"], "INT": ["E11D", "T124N"], "RT-p51": ["V245E", "K277R"], "RT-p66": ["V245E", "K277R", "R461K"], "gp120": ["N52S", "V57P", "S136G", "M141V", "D157E", "D159S", "R224K", "E294T", "K329T", "-370S", "-376G", "-381E", "-382G", "T385-"], "gp41": ["V24I", "D129S", "G235T", "F326Y", "I329V", "L330I"], "nef": ["I43L", "V133I", "E155K", "V182E"], "p24": ["I15L", "G116A", "A208G"], "rev": ["L13I", "F21I", "A108T", "V109I"], "tat": ["F32L", "T39M", "T40K", "P59H"], "vif": ["I31V", "K158R", "I159R", "S186N"], "vpr": ["V37A"], "vpu": ["E58D", "V79I"]}, "labels": {"aa": "INT: E11D, T124N; RT-p51: V245E, K277R; RT-p66: V245E, K277R, R461K; gp120: N52S, V57P, S136G, M141V, D157E, D159S, R224K, E294T, K329T, -370S, -376G, -381E, -382G, T385-; gp41: V24I, D129S, G235T, F326Y, I329V, L330I; nef: I43L, V133I, E155K, V182E; p24: I15L, G116A, A208G; rev: L13I, F21I, A108T, V109I; tat: F32L, T39M, T40K, P59H; vif: I31V, K158R, I159R, S186N; vpr: V37A; vpu: E58D, V79I"}}, "children": [{"name": "MZ041446", "node_attrs": {"div": 0.17969000000000002, "accession": "MZ041446", "clade_membership": {"value": "B"}, "country": {"value": "BE"}, "date": {"value": 2016.0}, "Strain_name": {"value": "STAR10_TCM_TTM_A1_85"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A263G", "A304T", "G405A", "G406T", "A424G", "T476C", "A562G", "T575C", "G608A", "G644A", "C731T", "C747A", "C749G", "G770A", "A833G", "A839T", "T852A", "C902T", "A977G", "A1025G", "C1040T", "T1172C", "T1181C", "C1209T", "C1350T", "T1427A", "T1452C", "C1556A", "T1628C", "A1643G", "T1679C", "G1737-", "A1738-", "G1739-", "A1740-", "C1741-", "A1742-", "A1743-", "C1744-", "C1767A", "G1769A", "A1841G", "A1907T", "A1908G", "C1986T", "C2075A", "T2158G", "C2263T", "T2347C", "C2356T", "T2485C", "C2596T", "A2677G", "A2693G", "G2830A", "T2890C", "G2926A", 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"G8365-", "T8366-", "A8367-", "G8368-", "G8373A", "-8374G", "C8382G", "T8384C", "G8385A", "G8409A", "G8414C", "G8429A", "A8435G", "A8438G", "A8458G", "A8494C", "C8514G", "G8531A", "C8661A", "C8688A", "T8708A", "C8720T", "G8789C", "G8799A", "A8844G", "A8851T", "A8893G", "T8915C", "G8955A", "C8960A", "T8966C", "C9012T", "T9074C", "T9109C", "T9172-"], "INT": ["A21T", "S119G", "M154L", "L234V"], "RT-p51": ["T200A", "E297A", "I326V", "A376V", "T400A", "V435I"], "RT-p66": ["T200A", "E297A", "I326V", "A376V", "T400A", "V435I", "S519N"], "gp120": ["A2T", "T3E", "E4D", "Y33Q", "D34N", "V40I", "V56I", "L83I", "-107G", "-109Y", "N111T", "-116G", "-121M", "I126L", "R138K", "V154A", "N160T", "T161V", "D202N", "K204T", "T208K", "K212T", "V242I", "E247D", "N261K", "S263F", "K277R", "H280S", "A291T", "T292G", "K309Q", "N311T", "N312D", "K315R", "I317V", "S319T", "-326K", "-328A", "V332K", "M345T", "T359S", "-368F", "-372T", "-373G", "-374T", "-375G", "-377S", "-383V", "D384-", "T387I", "I395V", "R416N", "N420Q", "N433G", "N435R", "T437E", "T439V", "K462R"], "gp41": ["H53R", "K77Q", "E110R", "D113N", "N140H", "Q147L", "T165S", "I182V", "V187I", "T189A", "L210H", "V247I", "R250W", "H258R", "A281I", "V301I", "A308S", "V321A", "V322L", "Q323L"], "nef": ["S8M", "P14A", "A15T", "A23T", "E24D", "K39R", "N51T", "L58V", "Q107K", "H116N", "E149D", "V153I", "M168V", "Q170L", "K184R", "M194V", "L198M", "D205N", "C206*"], "p17": ["G24M", "K76R"], "p2": ["S10P"], "p24": ["L6M", "S41T", "P160S", "P207S"], "p6": ["E20-", "T21-", "T22-", "P30T"], "pro": ["I15V", "N37C", "L93I"], "rev": ["R53N", "S54K", "G65D", "S67P", "A68L", "S99N"], "tat": ["V4I", "K29R", "V67N", "S75T", "P77H"], "vif": ["K22I", "Y30H", "T47P", "I87V", "D99E", "N101D", "H127R", "S130R", "I154V", "T155V"], "vpr": ["N28H", "G41S", "H45Y", "R85Q", "Q86R", "S94N"], "vpu": ["P3S", "E56D", "E66D", "H74D"]}, "labels": {"aa": "INT: A21T, S119G, M154L, L234V; RT-p51: T200A, E297A, I326V, A376V, T400A, V435I; RT-p66: T200A, E297A, I326V, A376V, T400A, V435I, S519N; gp120: A2T, T3E, E4D, Y33Q, D34N, V40I, V56I, L83I, -107G, -109Y, N111T, -116G, -121M, I126L, R138K, V154A, N160T, T161V, D202N, K204T, T208K, K212T, V242I, E247D, N261K, S263F, K277R, H280S, A291T, T292G, K309Q, N311T, N312D, K315R, I317V, S319T, -326K, -328A, V332K, M345T, T359S, -368F, -372T, -373G, -374T, -375G, -377S, -383V, D384-, T387I, I395V, R416N, N420Q, N433G, N435R, T437E, T439V, K462R; gp41: H53R, K77Q, E110R, D113N, N140H, Q147L, T165S, I182V, V187I, T189A, L210H, V247I, R250W, H258R, A281I, V301I, A308S, V321A, V322L, Q323L; nef: S8M, P14A, A15T, A23T, E24D, K39R, N51T, L58V, Q107K, H116N, E149D, V153I, M168V, Q170L, K184R, M194V, L198M, D205N, C206*; p17: G24M, K76R; p2: S10P; p24: L6M, S41T, P160S, P207S; p6: E20-, T21-, T22-, P30T; pro: I15V, N37C, L93I; rev: R53N, S54K, G65D, S67P, A68L, S99N; tat: V4I, K29R, V67N, S75T, P77H; vif: K22I, Y30H, T47P, I87V, D99E, N101D, H127R, S130R, I154V, T155V; vpr: N28H, G41S, H45Y, R85Q, Q86R, S94N; vpu: P3S, E56D, E66D, H74D"}}}, {"name": "KT124797", "node_attrs": {"div": 0.20592, "accession": "KT124797", "clade_membership": {"value": "B"}, "country": {"value": "DE"}, "date": {"value": 2010.0}, "Strain_name": {"value": "863847"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "G361C", "A398G", "A423C", "A425G", "G455A", "C467T", "T473C", "G579A", "A609C", "A611G", "T635C", "C641T", "A659G", "T668C", "T782C", "G810A", "G818A", "C827T", "A869G", "A899G", "T917C", "C950A", "A968G", "T978C", "A986G", "A1002G", "T1037C", "C1060A", "G1139A", "C1174T", "G1184A", "C1220T", "G1256A", "G1268A", "T1296C", "T1322C", "T1331C", "A1349G", "T1444C", "A1449G", "A1450C", "C1459G", "C1460T", "C1478T", "T1481C", "A1496G", "A1526G", "C1556T", "A1588G", "C1598T", "A1601G", "T1628A", "T1682C", "G1687A", "A1701T", "A1736G", "A1743G", "-1745C", "A1746C", "T1752C", "C1768A", "C1782A", "T1783C", "T1785C", "T1791A", "A1793G", "G1794A", "G1804A", "C1853A", "A1857G", 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"T4153A", "G4183A", "G4186A", "G4351A", "G4359C", "G4376A", "C4381T", "A4423G", "T4498G", "A4622G", "A4652C", "T4679C", "G4689A", "A4693G", "G4694T", "A4722T", "G4723C", "G4735A", "T4805G", "C4820A", "G4835T", "T4840C", "A4858G", "A4877G", "G4878A", "G4887A", "C4890T", "T4916C", "T4972G", "G4975C", "C4977T", "A5015G", "G5037A", "C5050A", "A5063G", "A5065G", "G5085A", "C5086A", "A5119G", "G5123A", "G5137A", "T5182C", "T5188G", "T5214G", "A5215C", "A5230G", "G5233A", "G5275A", "A5335G", "T5354C", "T5356C", "G5359C", "G5363A", "A5421G", "A5432G", "T5439G", "T5448A", "A5494C", "A5537G", "G5557C", "A5560T", "C5569A", "T5577C", "T5578C", "T5584C", "A5594G", "C5602T", "C5620G", "A5621T", "T5626G", "T5627C", "G5647T", "T5677A", "G5730A", "A5743C", "G5747T", "T5772C", "C5781T", "T5789A", "T5791G", "C5792A", "T5801C", "G5802T", "-5805G", "C5824T", "A5840T", "G5861A", "A5907G", "T5956G", "A5957C", "G5963A", "T6024A", "A6025T", "G6028A", "A6043G", "T6046C", "A6059G", "A6061C", "T6091C", "C6163T", 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"T8595G", "C8609T", "G8654A", "T8666G", "T8672A", "A8696G", "G8717T", "A8762G", "A8796G", "A8804G", "G8807A", "A8827T", "T8829A", "G8875A", "A8885G", "G8886C", "C8907T", "G8922A", "T8935A", "A8947T", "C8948T"], "INT": ["E13D", "A23T", "S57N", "I60V", "L74I", "V110K", "T112I", "S119P", "T122I", "S195T", "V201I", "S283G"], "RT-p51": ["V21I", "V35M", "T39A", "E40D", "R83K", "I135R", "S162C", "D177E", "I178M", "Q207E", "R211A", "S251H", "V292I", "E297K", "V317A", "I329L", "G333E", "Q334H", "M357I", "V365I", "K390R"], "RT-p66": ["V21I", "V35M", "T39A", "E40D", "R83K", "I135R", "S162C", "D177E", "I178M", "Q207E", "R211A", "S251H", "V292I", "E297K", "V317A", "I329L", "G333E", "Q334H", "M357I", "V365I", "K390R", "D460N", "S468T", "L469I", "L491S", "V496I", "L517I", "A554S"], "gp120": ["K18R", "D34K", "T35P", "V37I", "P57H", "K69D", "V106Y", "-107P", "-109D", "T112S", "N113T", "S115N", "-116S", "G117S", "-118N", "-120I", "-121L", "G124E", "T134S", "T135G", "Q142K", "K143T", "L147A", "V153L", "N160S", "T161S", "L165I", "K204E", "E240K", "V243I", "E247K", "T250S", "N251D", "A253S", "T255I", "Q259H", "V264I", "Q265T", "N272G", "G293D", "T294I", "A308T", "K309E", "N312K", "K315Q", "Q316K", "A318V", "S319D", "R322G", "E323K", "Q324K", "F325L", "-326I", "-328K", "T330K", "V332I", "M345K", "G351E", "N358D", "T360S", "Q361K", "-368I", "-372G", "-373N", "-377T", "N379D", "-383S", "K393R", "I396V", "M398R", "R412S", "Q414Y", "L424I", "N433D", "N434E", "E436T", "I463L", "V468I"], "gp41": ["I4L", "R46Q", "K106R", "L108Y", "D109N", "E110D", "E119Q", "K122R", "Q147K", "V190A", "V194M", "F206L", "P213A", "E220A", "R229Q", "R236Q", "I245F", "L249I", "S256L", "V267A", "A268T", "I270S", "R276H", "S293I", "N298K", "A306T", "A310V", "V318I", "V322A", "H331N", "R334V", "A343L"], "nef": ["G3S", "W5L", "S9R", "-10T", "-11P", "P14S", "A15V", "V16I", "D28A", "S45T", "L85V", "D108E", "Q125H", "K152E", "N162I", "C163S", "R178K", "E182Q", "L198K", "Y202F"], "p17": ["V7I", "S9T", "R30Q", "V82I", "I92L"], "p2": ["V7A", "N9A", "T12S"], "p24": ["V27I", "I91V", "T110N", "T148I"], "p6": ["S3N", "T8S", "T22A", "T23P", "S25P", "P30Q", "L35T", "Y36H", "L38M", "A39T", "R42K"], "p7": ["K41R"], "pro": ["L19I", "K20R", "M36L", "N37D", "L63P"], "rev": ["S8G", "K14N", "I21T", "T31S", "E47A", "R53H", "H63L", "S67H", "A68T", "Q74P", "S86N", "D88E", "I102V", "E111D", "*117E"], "tat": ["K19R", "N24K", "K40Q", "Q54R", "D61H", "S62C", "H65N", "V67D", "S68P", "S70P", "P77Q", "K85Q"], "vif": ["K22N", "K33R", "A35T", "K36S", "R50K", "H73Q", "D78E", "Q83H", "V85A", "K91R", "V98I", "V129G", "S130T", "P131S", "A151T", "T155K", "K160R", "A167K", "Q178R", "R184K"], "vpr": ["D7N", "N28Q", "A37S", "Q77R", "I84T", "R85P"], "vpu": ["Q5V", "L7A", "V14L", "S24T", "I46L", "R47I", "E60D", "L61Q", "S62E", "V65A", "-69Y", "H73-", "D78V"]}, "labels": {"aa": "INT: E13D, A23T, S57N, I60V, L74I, V110K, T112I, S119P, T122I, S195T, V201I, S283G; RT-p51: V21I, V35M, T39A, E40D, R83K, I135R, S162C, D177E, I178M, Q207E, R211A, S251H, V292I, E297K, V317A, I329L, G333E, Q334H, M357I, V365I, K390R; RT-p66: V21I, V35M, T39A, E40D, R83K, I135R, S162C, D177E, I178M, Q207E, R211A, S251H, V292I, E297K, V317A, I329L, G333E, Q334H, M357I, V365I, K390R, D460N, S468T, L469I, L491S, V496I, L517I, A554S; gp120: K18R, D34K, T35P, V37I, P57H, K69D, V106Y, -107P, -109D, T112S, N113T, S115N, -116S, G117S, -118N, -120I, -121L, G124E, T134S, T135G, Q142K, K143T, L147A, V153L, N160S, T161S, L165I, K204E, E240K, V243I, E247K, T250S, N251D, A253S, T255I, Q259H, V264I, Q265T, N272G, G293D, T294I, A308T, K309E, N312K, K315Q, Q316K, A318V, S319D, R322G, E323K, Q324K, F325L, -326I, -328K, T330K, V332I, M345K, G351E, N358D, T360S, Q361K, -368I, -372G, -373N, -377T, N379D, -383S, K393R, I396V, M398R, R412S, Q414Y, L424I, N433D, N434E, E436T, I463L, V468I; gp41: I4L, R46Q, K106R, L108Y, D109N, E110D, E119Q, K122R, Q147K, V190A, V194M, F206L, P213A, E220A, R229Q, R236Q, I245F, L249I, S256L, V267A, A268T, I270S, R276H, S293I, N298K, A306T, A310V, V318I, V322A, H331N, R334V, A343L; nef: G3S, W5L, S9R, -10T, -11P, P14S, A15V, V16I, D28A, S45T, L85V, D108E, Q125H, K152E, N162I, C163S, R178K, E182Q, L198K, Y202F; p17: V7I, S9T, R30Q, V82I, I92L; p2: V7A, N9A, T12S; p24: V27I, I91V, T110N, T148I; p6: S3N, T8S, T22A, T23P, S25P, P30Q, L35T, Y36H, L38M, A39T, R42K; p7: K41R; pro: L19I, K20R, M36L, N37D, L63P; rev: S8G, K14N, I21T, T31S, E47A, R53H, H63L, S67H, A68T, Q74P, S86N, D88E, I102V, E111D, *117E; tat: K19R, N24K, K40Q, Q54R, D61H, S62C, H65N, V67D, S68P, S70P, P77Q, K85Q; vif: K22N, K33R, A35T, K36S, R50K, H73Q, D78E, Q83H, V85A, K91R, V98I, V129G, S130T, P131S, A151T, T155K, K160R, A167K, Q178R, R184K; vpr: D7N, N28Q, A37S, Q77R, I84T, R85P; vpu: Q5V, L7A, V14L, S24T, I46L, R47I, E60D, L61Q, S62E, V65A, -69Y, H73-, D78V"}}}]}, {"name": "B_NODE_0000039", "node_attrs": {"div": 0.14494, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G455A", "G614T", "A4774G", "A6221-", "A6222-", "A6223-", "C6807T", "A6810G", "C6935A", "-7004G", "-7005A", "-7006C", "A7155C", "A7322T", "G8010A", "G8276A", "G8922A", "C9017A", "G9132A"], "gp120": ["A318V", "Q361A", "N433S"], "gp41": ["M7L", "R236P", "A325T"], "vif": ["K63R"]}, "labels": {"aa": "gp120: A318V, Q361A, N433S; gp41: M7L, R236P, A325T; vif: K63R"}}, "children": [{"name": "B_NODE_0000040", "node_attrs": {"div": 0.15346, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T495G", "G771T", "T1421C", "A1442G", "T1679C", "T1771G", "G2009A", "G2343A", "C2575T", "G3016A", "G3093A", "G3166A", "A3264G", "C3266T", "A3280G", "G3293T", "C3294T", "G3473A", "T3550C", "G3664A", "G4183A", "G4376A", "T4534C", "G4835A", "G4887A", "T4969G", "G5087A", "T5203C", "G5370A", "T5487C", "A5491T", "C5563A", "T5626A", "C5651T", "C5688A", "A5790G", "-5805G", "G5861A", "T5956G", "A6030G", "A6065G", "-6204G", "-6211G", "-6216T", "-6217G", "C6262T", "G6267A", "G6280A", "G6329A", "A6333G", "T6599A", "G6631T", "G6725A", "A6797G", "C6800A", "C6876T", "-6983A", "C6991A", "-6996A", "-7001A", "-7002A", "A7090G", "G7256A", "A7269G", "G7441A", "T7762C", "A7847G", "A7929G", "C8047T", "G8105A", "G8204A", "T8290C", "G8323A", "G8330C", "C8331T", "G8372A", "-8374T", "A8655C", "C8688A", "A8762G", "A8816G", "T8829A", "T8832C", "G8846A", "A8851T"], "INT": ["V201I"], "RT-p51": ["R83K", "G333E", "K390R", "T400L"], "RT-p66": ["R83K", "G333E", "K390R", "T400L", "D460N"], "gp120": ["K5N", "D34E", "E59G", "N71D", "F249I", "Q259H", "A291T", "Q316K", "-328N", "P341L", "N434T", "V468I", "K472R"], "gp41": ["D109E", "K122R", "D129G", "I182V", "H209R", "A268T", "V301I", "A343L"], "nef": ["-11V", "K105Q", "H116N", "C163S", "M168I", "Q170L"], "p17": ["S54A", "K91R", "E93D"], "p6": ["I31R"], "pro": ["A71T"], "rev": ["R53Q"], "tat": ["N24T", "T39L", "Q63K", "T74A"], "vif": ["I128R"], "vpr": ["A89T"], "vpu": ["L7I", "A15V", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: V201I; RT-p51: R83K, G333E, K390R, T400L; RT-p66: R83K, G333E, K390R, T400L, D460N; gp120: K5N, D34E, E59G, N71D, F249I, Q259H, A291T, Q316K, -328N, P341L, N434T, V468I, K472R; gp41: D109E, K122R, D129G, I182V, H209R, A268T, V301I, A343L; nef: -11V, K105Q, H116N, C163S, M168I, Q170L; p17: S54A, K91R, E93D; p6: I31R; pro: A71T; rev: R53Q; tat: N24T, T39L, Q63K, T74A; vif: I128R; vpr: A89T; vpu: L7I, A15V, -70E, -71M, -72G"}}, "children": [{"name": "KC473833", "node_attrs": {"div": 0.20616, "accession": "KC473833", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMB11US006"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C207T", "A286G", "-305C", "G354A", "G369C", "A378C", "A386G", "A399C", "A417C", "C462A", "T473A", "T476C", "T479C", "A500G", "T506C", "T539A", "G599A", "A619G", "T635C", "G650A", "G656A", "A674G", "G687A", "C698T", "T728C", "C749T", "G752A", "T771C", "A791G", "G810A", "A836G", "C926T", "C990G", "A991C", "T992C", "A995T", "A1002C", 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"G6848A", "A6859T", "A6886G", "T6888C", "G6889A", "T6925C", "A6932T", "A6935G", "A6936C", "T6958-", "A6974-", "C6975-", "T6976-", "G6980-", "G6982-", "C6984T", "A6990C", "C6993G", "-6997A", "-7009A", "C7014T", "C7045T", "A7046C", "A7065G", "C7078T", "C7094A", "A7096C", "A7102C", "T7106A", "A7120G", "C7124G", "T7150C", "A7151G", "C7153G", "T7159C", "G7162C", "G7212A", "A7219G", "T7228C", "A7252G", "G7291A", "T7321A", "A7373G", "G7390A", "A7396G", "A7522G", "A7533G", "G7552A", "C7582T", "T7597C", "C7605T", "C7625T", "T7626A", "G7627T", "T7630G", "G7631C", "G7633A", "C7651A", "G7658C", "G7660A", "C7678T", "C7684T", "C7690T", "T7691A", "A7700T", "A7722T", "G7726A", "A7732C", "G7735A", "C7742A", "A7747T", "A7782C", "T7852G", "T7870A", "A7880T", "C7941A", "T8008A", "C8009G", "T8016C", "G8017C", "G8018A", "A8019G", "A8029G", "G8030A", "T8037G", "A8104G", "G8107A", "G8137T", "G8144A", "A8193G", "C8213T", "C8215T", "C8221T", "G8245A", "G8255A", "T8257C", "T8265C", "G8267A", "T8279G", "G8280T", "T8321A", "T8322C", "A8338G", "T8348G", "-8370C", "G8432A", "C8450T", "C8460T", "A8484-", "C8485-", "A8486-", "G8487-", "C8488-", "A8489-", "G8499C", "G8508A", "G8526C", "G8528A", "G8534A", "G8540A", "T8600C", "A8643G", "T8646C", "C8648T", "T8675C", "G8682A", "C8699A", "A8746T", "G8795T", "G8834A", "C8838A", "A8839G", "T8864G", "G8873T", "G8875A", "G8888A", "A8893G", "G8894A", "A8909G", "A8950T", "T8966C", "C8990T", "G9016C", "G9030T", "T9051A", "T9068C", "T9075C", "G9095T", "T9115C"], "INT": ["E11D", "A91T", "S195T", "S230N"], "RT-p51": ["K20R", "K82R", "K102Q", "K122E", "S162A", "K173R", "Q207R", "R211S", "E248D", "P272S", "K277R", "A288S", "Q334H", "M357I", "A376S", "K385R", "T386I", "E399D", "V435E"], "RT-p66": ["K20R", "K82R", "K102Q", "K122E", "S162A", "K173R", "Q207R", "R211S", "E248D", "P272S", "K277R", "A288S", "Q334H", "M357I", "A376S", "K385R", "T386I", "E399D", "V435E", "E449D", "R461K", "L469I", "H483L", "S519N"], "gp120": ["S1N", "E4D", "K18R", "T21N", "V57K", "M67A", "K93R", "V106L", "-107N", "N108A", "-109T", "T110-", "N111-", "T112-", "N113-", "S114-", "-116I", "-118S", "-119N", "-120M", "-121T", "E122L", "S130T", "I137K", "R138N", "M141K", "Q142T", "K143T", "Y145R", "L147Y", "Y149N", "K150R", "I156M", "N158D", "D159N", "N160S", "Q175H", "T208K", "P210L", "T250S", "N261K", "N267I", "T269V", "K277Q", "S278G", "I281M", "A288T", "E294G", "H302Y", "K309E", "N311T", "K315G", "S319G", "Q324R", "N327-", "V332I", "Q335H", "M345T", "T360S", "-370S", "-372I", "N378-", "-381S", "-382E", "-383N", "T387I", "M398L", "K404R", "Q414N", "R416S", "S418T", "L424V", "S433G", "E436D", "S453N"], "gp41": ["K77R", "T101I", "L108Y", "E110Q", "E119Q", "L130I", "T133S", "N140I", "E143D", "Q147K", "E148D", "N160T", "I193L", "P213Q", "G235R", "P236E", "V238A", "D239S", "A243T", "I245S", "A281I", "K297R", "L304F", "V318I", "V321A", "V322I", "F326V", "L340T"], "nef": ["-10L", "H40Y", "T48-", "A49-", "A53P", "A56T", "E62Q", "I101V", "Y102H", "V114I", "V133I", "Y135F", "E151D", "H166S", "D174E", "E177D", "R178K", "K184R", "Y203F"], "p17": ["V7I", "E12Q", "K28Q", "R30K", "K95R", "A118T"], "p24": ["A14P", "V27I", "H87A", "I91P", "N120H", "E128D", "L136M"], "p6": ["T21M", "T23I", "S25P", "L35-", "A39T"], "p7": ["R3K", "N8T", "T12I"], "pro": ["L19I", "E35D", "N37D", "L63C"], "rev": ["T15A", "F21L", "L22I", "S25T", "S54R", "G57Q", "S61D", "H63Q", "S86D", "E87K", "V97L", "S99N"], "tat": ["R7K", "K19R", "T24A", "V36K", "A58T", "D61S", "K63E", "V67A", "S68H", "K71D", "P77H"], "vif": ["T20A", "I31N", "A35T", "K36Q", "G37R", "E45D", "T47P", "R50K", "Q105R", "I120V", "N122K", "R132I", "N140S", "K141Q", "I159K", "K179R"], "vpr": ["T19A", "V37I", "R85Q", "Q86R"], "vpu": ["P3S", "L12I", "V21I", "K38R", "D44E", "E58D", "E60D", "L61H", "S62E", "A63E", "V65A", "E66T", "M67L", "G68-", "-69V", "H74D"]}, "labels": {"aa": "INT: E11D, A91T, S195T, S230N; RT-p51: K20R, K82R, K102Q, K122E, S162A, K173R, Q207R, R211S, E248D, P272S, K277R, A288S, Q334H, M357I, A376S, K385R, T386I, E399D, V435E; RT-p66: K20R, K82R, K102Q, K122E, S162A, K173R, Q207R, R211S, E248D, P272S, K277R, A288S, Q334H, M357I, A376S, K385R, T386I, E399D, V435E, E449D, R461K, L469I, H483L, S519N; gp120: S1N, E4D, K18R, T21N, V57K, M67A, K93R, V106L, -107N, N108A, -109T, T110-, N111-, T112-, N113-, S114-, -116I, -118S, -119N, -120M, -121T, E122L, S130T, I137K, R138N, M141K, Q142T, K143T, Y145R, L147Y, Y149N, K150R, I156M, N158D, D159N, N160S, Q175H, T208K, P210L, T250S, N261K, N267I, T269V, K277Q, S278G, I281M, A288T, E294G, H302Y, K309E, N311T, K315G, S319G, Q324R, N327-, V332I, Q335H, M345T, T360S, -370S, -372I, N378-, -381S, -382E, -383N, T387I, M398L, K404R, Q414N, R416S, S418T, L424V, S433G, E436D, S453N; gp41: K77R, T101I, L108Y, E110Q, E119Q, L130I, T133S, N140I, E143D, Q147K, E148D, N160T, I193L, P213Q, G235R, P236E, V238A, D239S, A243T, I245S, A281I, K297R, L304F, V318I, V321A, V322I, F326V, L340T; nef: -10L, H40Y, T48-, A49-, A53P, A56T, E62Q, I101V, Y102H, V114I, V133I, Y135F, E151D, H166S, D174E, E177D, R178K, K184R, Y203F; p17: V7I, E12Q, K28Q, R30K, K95R, A118T; p24: A14P, V27I, H87A, I91P, N120H, E128D, L136M; p6: T21M, T23I, S25P, L35-, A39T; p7: R3K, N8T, T12I; pro: L19I, E35D, N37D, L63C; rev: T15A, F21L, L22I, S25T, S54R, G57Q, S61D, H63Q, S86D, E87K, V97L, S99N; tat: R7K, K19R, T24A, V36K, A58T, D61S, K63E, V67A, S68H, K71D, P77H; vif: T20A, I31N, A35T, K36Q, G37R, E45D, T47P, R50K, Q105R, I120V, N122K, R132I, N140S, K141Q, I159K, K179R; vpr: T19A, V37I, R85Q, Q86R; vpu: P3S, L12I, V21I, K38R, D44E, E58D, E60D, L61H, S62E, A63E, V65A, E66T, M67L, G68-, -69V, H74D"}}}, {"name": "KT124812", "node_attrs": {"div": 0.19226000000000001, "accession": "KT124812", "clade_membership": {"value": "B"}, "country": {"value": "DE"}, "date": {"value": 2004.0}, "Strain_name": {"value": "963987"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "A423C", "A424G", "A440C", "T486A", "C516A", "C531T", "T571A", "G608A", "C641A", "G644A", "G709A", "C746T", "C830T", "T861G", "T884C", "C902T", "G944T", "C1040T", "A1074G", "A1079T", "A1090G", "C1137T", "G1160A", "C1229T", "G1271T", "A1307G", "A1359T", "C1362T", "T1444C", "A1449C", "T1452A", "G1455-", "C1456-", "T1457-", "C1460A", "A1461G", "T1484C", "A1500G", "A1567G", "G1568A", "T1613C", "G1687A", "C1692A", "A1715G", "G1739A", "A1743G", "A1772G", "G1773A", "A1776G", "G1784A", "G1804A", "A1835G", "A1852G", "T1895A", "C2070T", "A2161G", "C2386A", "T2449A", "T2542C", "A2616G", "A2617G", "T2631A", "G2656A", "G2682A", "G2710A", "A2726G", "A2752G", "T2905C", "A2968G", "G2969A", "A2985C", "C3023T", "A3027G", "T3049C", "A3080C", "A3164T", "T3165C", "C3175T", "C3322T", "T3331C", "T3412C", "G3439A", "A3463G", "T3497C", "A3503C", "C3542T", "T3567C", "A3576G", "C3577T", "C3649T", "C3692T", "A3703C", "A3706G", "A3715G", "A3733T", "G3770A", "G3866A", "A3913G", "T3924C", "C3962T", "A3964G", "A3989G", "A4069C", "A4145G", "T4153C", "G4177A", "G4267A", "T4276C", "C4321T", "G4353A", "A4372G", "A4384G", "A4397C", "G4459A", "G4495A", "G4637A", "C4665T", "A4683G", "A4693G", "T4701G", "G4708A", "C4728A", "A4733T", "T4827C", "A4857G", "T4910C", "T4959G", "C4965A", "C5019T", "A5046C", "T5047G", "G5099A", "A5119G", "A5186C", "A5213G", "A5290G", "C5294T", "A5345G", "A5360-", "C5361-", "A5362-", "C5398A", "G5412C", "T5430C", "C5444A", "T5448C", "A5493G", "T5515C", "C5567A", "T5584C", "A5612C", "C5620T", "A5622T", "A5625G", "G5629T", "A5632G", "T5677A", "T5731A", "G5747T", "A5787G", "A5804G", "-5812C", "-5813A", "-5814C", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5826C", "G5864A", "A5869T", "T5929C", "A5965G", "G6079A", "G6088T", "G6167A", "-6170G", "-6172T", "-6175G", "A6177C", "-6180G", "C6183A", "A6185G", "A6186G", "A6188C", "C6189T", "G6195A", "-6203T", "-6205G", "-6206G", "-6207G", "-6210G", "-6215A", "G6220A", "-6221G", "-6222A", "-6223A", "A6226G", "A6235G", "C6247T", "T6252C", "G6261A", "A6263G", "T6271C", "A6273G", "G6284C", "T6295A", "C6318A", "A6319G", "T6331C", "T6334C", "A6335G", "A6338G", "G6339A", "T6340A", "T6351C", "G6392A", "G6403A", "G6425A", "C6446A", "G6451A", "A6490T", "A6529G", "C6545T", "C6563T", "G6578A", "C6601A", "C6647G", "T6655C", "A6682C", "A6693C", "-6703A", "A6713G", "T6724C", "A6767C", "A6781G", "A6785G", "T6787G", "C6790A", "G6806A", "T6807G", "A6811T", "T6863A", "A6877C", "T6916C", "C6919T", "A6937C", "-6956T", "-6957C", "T6961A", "G6963A", "A6965G", "C6966A", "-6977A", "-6978A", "-6979T", "-6981T", "T6988C", "-6997T", "C7008T", "-7009T", "C7012A", "A7108C", "C7124T", "A7161G", "A7163T", "C7170T", "T7217C", "A7297G", "T7321G", "T7403C", "C7463A", "C7474T", "A7570G", "A7573G", "A7604G", "C7625A", "T7630A", "G7633C", "G7640A", "C7690G", "T7691G", "C7701G", "C7702A", "A7706C", "A7711G", "G7712A", "G7720A", "C7770A", "A7771C", "A7782G", "G7790A", "A7791G", "G7807A", "A7818G", "C7869G", "G7883A", "G7885A", "C7906T", "T7913A", "T7921G", "T7932A", "C7938G", "C7940A", "A7963C", "G7987C", "G7991A", "C7999T", "A8000G", "A8010C", "T8145C", "T8218C", "G8242A", "G8255T", "G8264A", "G8267T", "C8277T", "C8286G", "C8293T", "G8304C", "G8342A", "G8350C", "-8370G", "G8388A", "A8408G", "G8409A", "G8412A", "A8413G", "C8415G", "G8429A", "C8440T", "A8458G", "A8469G", "T8483C", "A8494C", "C8495T", "T8501C", "C8514G", "A8530G", "G8534T", "T8568C", "T8594G", "C8640A", "A8642G", "A8739G", "T8747C", "T8759C", "G8795A", "G8799A", "A8812C", "G8814A", "G8818C", "A8827C", "C8828A", "T8843C", "G8858A", "G8870A", "A8874G", "G8886C", "T8887A", "C8903T", "G8905A", "A8917G", "G8955A"], "INT": ["V31I", "M50T", "I72V", "T124A", "G193E", "I203M", "I208L", "D288N"], "RT-p51": ["Q174R", "V179D", "G196E", "R211G", "V292I", "E297A", "K311R", "I329L", "M357S"], "RT-p66": ["Q174R", "V179D", "G196E", "R211G", "V292I", "E297A", "K311R", "I329L", "M357S", "S468P", "T470P", "H483Y", "L491S", "N494S", "E546D", "V559I"], "gp120": ["E4K", "E78D", "D105N", "-107K", "N108T", "-116W", "-118R", "-119M", "K123E", "I133T", "S136D", "I137V", "R138K", "K140R", "E144Q", "P155Q", "N158S", "D159S", "N160T", "T161N", "S162N", "I166T", "V180I", "A191T", "L198I", "K212T", "V242I", "Q265E", "R276S", "H280P", "R287G", "E294S", "I305L", "N311E", "N312K", "K315E", "V318S", "S337T", "A361N", "-368S", "-370D", "-372N", "-373V", "-374T", "-375N", "-376K", "-377T", "N378D", "T380-", "T385I", "E436G", "T437S", "T439I"], "gp41": ["V24M", "L54M", "T101A", "L108M", "E110D", "D113N", "L130V", "T133R", "I135L", "E137K", "A156D", "N160S", "D163S", "K172R", "T189S", "V194I", "L204I", "F206L", "L210H", "A212G", "P213T", "E220D", "E228D", "D230N", "R233G", "G235S", "V318F", "V321I", "V322L", "T325I", "F326C", "A328G", "R334T"], "nef": ["G3A", "-10V", "V16I", "A23T", "E24R", "P25A", "A33V", "K39R", "I43V", "N51T", "L58V", "E63K", "E64G", "L100M", "V153I", "N157T", "E158K", "G159A", "N162T", "R178G", "V182Q", "R188H", "H192R", "D205N"], "p17": ["L51I", "L61M", "P66S", "F79Y", "D102E", "S125N"], "p2": ["V7A", "N9H", "S10T", "A11-", "I13V"], "p24": ["A14S", "S44A", "E71D", "I115V", "N120S", "E180D", "T210S"], "p6": ["S3N", "P5T", "T22A", "D32N", "K33E", "R42K"], "p7": ["T12A", "R26K", "K34R"], "pro": ["I13V", "L33I", "L63P", "T91I"], "rev": ["L18I", "S30R", "T31N", "E47Q", "R48K", "Q51W", "S86N"], "tat": ["L8I", "K12N", "T23N", "Y47H", "T64N", "S70P", "S75T", "P77E", "K85T"], "vif": ["H27Y", "K33G", "K36R", "F39V", "R41K", "H48N", "K91E", "L125V", "H127N", "I154R", "Q178R"], "vpr": ["N28H", "Q86-"], "vpu": ["Q2P", "Q5Y", "I6M", "A8S", "I9V", "S24T", "L42I", "R47I", "E66G", "-69H"]}, "labels": {"aa": "INT: V31I, M50T, I72V, T124A, G193E, I203M, I208L, D288N; RT-p51: Q174R, V179D, G196E, R211G, V292I, E297A, K311R, I329L, M357S; RT-p66: Q174R, V179D, G196E, R211G, V292I, E297A, K311R, I329L, M357S, S468P, T470P, H483Y, L491S, N494S, E546D, V559I; gp120: E4K, E78D, D105N, -107K, N108T, -116W, -118R, -119M, K123E, I133T, S136D, I137V, R138K, K140R, E144Q, P155Q, N158S, D159S, N160T, T161N, S162N, I166T, V180I, A191T, L198I, K212T, V242I, Q265E, R276S, H280P, R287G, E294S, I305L, N311E, N312K, K315E, V318S, S337T, A361N, -368S, -370D, -372N, -373V, -374T, -375N, -376K, -377T, N378D, T380-, T385I, E436G, T437S, T439I; gp41: V24M, L54M, T101A, L108M, E110D, D113N, L130V, T133R, I135L, E137K, A156D, N160S, D163S, K172R, T189S, V194I, L204I, F206L, L210H, A212G, P213T, E220D, E228D, D230N, R233G, G235S, V318F, V321I, V322L, T325I, F326C, A328G, R334T; nef: G3A, -10V, V16I, A23T, E24R, P25A, A33V, K39R, I43V, N51T, L58V, E63K, E64G, L100M, V153I, N157T, E158K, G159A, N162T, R178G, V182Q, R188H, H192R, D205N; p17: L51I, L61M, P66S, F79Y, D102E, S125N; p2: V7A, N9H, S10T, A11-, I13V; p24: A14S, S44A, E71D, I115V, N120S, E180D, T210S; p6: S3N, P5T, T22A, D32N, K33E, R42K; p7: T12A, R26K, K34R; pro: I13V, L33I, L63P, T91I; rev: L18I, S30R, T31N, E47Q, R48K, Q51W, S86N; tat: L8I, K12N, T23N, Y47H, T64N, S70P, S75T, P77E, K85T; vif: H27Y, K33G, K36R, F39V, R41K, H48N, K91E, L125V, H127N, I154R, Q178R; vpr: N28H, Q86-; vpu: Q2P, Q5Y, I6M, A8S, I9V, S24T, L42I, R47I, E66G, -69H"}}}]}, {"name": "B_NODE_0000041", "node_attrs": {"div": 0.15252000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A424G", "A461G", "C467T", "A562G", "C747G", "A1022G", "G1078C", "A1307G", "G1562A", "A1701T", "C2464T", "T2770C", "T2885C", "G3385A", "G3562A", "G3685A", "T4075C", "A4148G", "C4501T", "T4678G", "G4684A", "G5176A", "T5484G", "C5679T", "-5805A", "G5842A", "T5964C", "A6022G", "-6170T", "-6175T", "G6179A", "A6186G", "C6189T", "G6195A", "A6209-", "G6218-", "G6220-", "G6458A", "A6465C", "G6631A", "G6638A", "T6735A", "G6776A", "A6781C", "-6830G", "A6932T", "-6956A", "-6971A", "-6973T", "-6977A", "-6979A", "-6981G", "-6983T", "A6989G", "C7107T", "G7244A", "T7398A", "G7459A", "A7533G", "G7628A", "G7631A", "G7689A", "C7701A", "A7706C", "T7715G", "G7720A", "G7759A", "A7912C", "A8006G", "T8013C", "G8018A", "A8032G", "T8159G", "G8170A", "C8215T", "G8245A", "A8364C", "-8370G", "T8371G", "G8373A", "C8440T", "T8646C"], "INT": ["T125A"], "gp120": ["V37A", "E122-", "K123-", "D202N", "K204T", "K212T", "A308K", "T360S", "-374T", "-376G", "N379D", "R412S", "E464K"], "gp41": ["L32Q", "K77R", "T133N", "I135L", "S138A", "L237S", "D239N", "W286G"], "nef": ["-10G", "A33V", "Y102H"], "p17": ["K76R"], "p24": ["L6V", "G116A"], "p6": ["T8S", "E34D"], "pro": ["N37S"], "rev": ["E11D", "G57E", "N62D", "V104G", "A108T"], "tat": ["R7S"], "vpu": ["V79I"]}, "labels": {"aa": "INT: T125A; gp120: V37A, E122-, K123-, D202N, K204T, K212T, A308K, T360S, -374T, -376G, N379D, R412S, E464K; gp41: L32Q, K77R, T133N, I135L, S138A, L237S, D239N, W286G; nef: -10G, A33V, Y102H; p17: K76R; p24: L6V, G116A; p6: T8S, E34D; pro: N37S; rev: E11D, G57E, N62D, V104G, A108T; tat: R7S; vpu: V79I"}}, "children": [{"name": "MK303354", "node_attrs": {"div": 0.20499, "accession": "MK303354", "clade_membership": {"value": "B"}, "country": {"value": "ID"}, "date": {"value": 2014.0}, "Strain_name": {"value": "TD17"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A380G", "A399C", "G401A", "A458G", "C482T", "T495G", "A500G", "C516A", "G518A", "A578T", "G579A", "G607A", "T614A", "G615A", "C623T", "G644A", "G656A", "A677G", "A685C", "A686G", "C688T", "C713T", "G770A", "A887G", "C926T", "T936C", "A938G", "G944A", "A968G", "A1017C", "C1060G", "A1089C", "T1094C", "T1100C", "A1106G", "A1109G", "C1137T", "G1160A", "A1173G", "C1174T", "A1250G", "C1253T", "G1271T", "A1277G", "G1328A", "T1335C", "G1346A", "T1409C", "A1450C", "C1478T", "T1482A", "G1487A", "A1498G", "A1587G", "T1613C", "A1618G", "A1644C", "C1646T", "G1661A", "T1682C", "A1765G", "G1766A", "A1781T", "A1834C", "C1853T", "A1907T", "A1908C", "G1920A", "C1985T", "C1986T", "C1987A", "A1988G", "C1996T", "A2008G", "T2017C", "A2023T", "A2026G", "G2027A", "A2154G", "G2173A", "A2194C", "G2198A", "T2199G", "G2273A", "C2281T", "G2343A", "C2356T", "A2374T", "C2386T", "A2404G", "G2422A", "T2449A", "C2452A", 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"S519N"], "gp120": ["T3A", "E4G", "K5-", "E59G", "N64D", "K69E", "H77Q", "I80V", "T100I", "V106L", "-107N", "-109S", "N111G", "T112L", "S114N", "S115T", "-116H", "G117T", "I126M", "T135S", "S136P", "I137L", "V153I", "N158D", "N160R", "E183T", "I197L", "L198I", "N206D", "T208R", "E247K", "N251D", "T255N", "E262K", "S263P", "D297N", "K308R", "K309N", "N311T", "K315Q", "S319G", "Q324K", "-326E", "-368N", "-370T", "T371L", "-372T", "-373N", "-375T", "-377S", "Q414H", "R416N", "S418V", "L425I", "N434S", "E438-", "T439-", "G443A", "V468I", "K472E"], "gp41": ["I4M", "V24M", "L54M", "T101N", "D109K", "E110T", "N166K", "T189A", "S205P", "A212V", "E224D", "R229S", "D230G", "D232N", "R233T", "P236Q", "A243T", "I270T", "S302N", "A306T", "T307I", "V321A", "T325I", "F326G"], "nef": ["S8R", "-11K", "G12D", "R22Q", "A23T", "A27E", "D28G", "G29-", "E38G", "A49P", "A53E", "D54A", "K92R"], "p1": ["I5L"], "p17": ["S54A", "L61I", "V82I", "V94I", "Q117P", "A118V"], "p2": ["N9T"], "p24": ["M96L", "T110S", "N120H", "T148V", "E180D"], "p6": ["E29G", "Q52P"], "p7": ["F6I", "K11R", "R26K", "K41E", "E51G"], "pro": ["R41K", "I64V", "V77I"], "rev": ["S8R", "L18I", "T31A", "R50K", "Q51H", "S54T", "S61N", "P107S"], "tat": ["K12Q", "Q17R", "K19Q", "N24S", "F32L", "T39M", "T40K", "A58P", "T64N", "S68P", "L69V", "P77C"], "vif": ["M29I", "I31R", "A35V", "F39L", "H48N", "V55I", "D61E", "R63S", "I66V", "R77K", "I87V", "K91E", "S95N", "N101D", "Q105R", "Y110H", "Y111H", "D113E", "N122Q", "I124L", "H127R", "I128R", "Q136P", "A151V", "I154T", "K158R", "H187P"], "vpr": ["Y15H", "N28T", "H45Y", "I63T", "I84V"], "vpu": ["P3A", "Q5E", "A16G", "I18L", "S24T", "L27Y", "R31K", "I33L", "L34S", "R35K", "R37K", "L64I", "V65L", "H74L"]}, "labels": {"aa": "INT: S17C, T124S, K136R, V201I, S230N; RT-p51: K20R, V35R, V60I, R83K, M184V, I195M, T200A, R211K, Q334L, V365I, T403A; RT-p66: K20R, V35R, V60I, R83K, M184V, I195M, T200A, R211K, Q334L, V365I, T403A, D460N, R461K, T470N, Q480H, S519N; gp120: T3A, E4G, K5-, E59G, N64D, K69E, H77Q, I80V, T100I, V106L, -107N, -109S, N111G, T112L, S114N, S115T, -116H, G117T, I126M, T135S, S136P, I137L, V153I, N158D, N160R, E183T, I197L, L198I, N206D, T208R, E247K, N251D, T255N, E262K, S263P, D297N, K308R, K309N, N311T, K315Q, S319G, Q324K, -326E, -368N, -370T, T371L, -372T, -373N, -375T, -377S, Q414H, R416N, S418V, L425I, N434S, E438-, T439-, G443A, V468I, K472E; gp41: I4M, V24M, L54M, T101N, D109K, E110T, N166K, T189A, S205P, A212V, E224D, R229S, D230G, D232N, R233T, P236Q, A243T, I270T, S302N, A306T, T307I, V321A, T325I, F326G; nef: S8R, -11K, G12D, R22Q, A23T, A27E, D28G, G29-, E38G, A49P, A53E, D54A, K92R; p1: I5L; p17: S54A, L61I, V82I, V94I, Q117P, A118V; p2: N9T; p24: M96L, T110S, N120H, T148V, E180D; p6: E29G, Q52P; p7: F6I, K11R, R26K, K41E, E51G; pro: R41K, I64V, V77I; rev: S8R, L18I, T31A, R50K, Q51H, S54T, S61N, P107S; tat: K12Q, Q17R, K19Q, N24S, F32L, T39M, T40K, A58P, T64N, S68P, L69V, P77C; vif: M29I, I31R, A35V, F39L, H48N, V55I, D61E, R63S, I66V, R77K, I87V, K91E, S95N, N101D, Q105R, Y110H, Y111H, D113E, N122Q, I124L, H127R, I128R, Q136P, A151V, I154T, K158R, H187P; vpr: Y15H, N28T, H45Y, I63T, I84V; vpu: P3A, Q5E, A16G, I18L, S24T, L27Y, R31K, I33L, L34S, R35K, R37K, L64I, V65L, H74L"}}}, {"name": "FJ469732", "node_attrs": {"div": 0.19156, "accession": "FJ469732", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2004.0}, "Strain_name": {"value": "F7165"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "A389G", "T396C", "T426C", "T506C", "C516T", "A533G", "A557G", "G585A", "T586C", "C587T", "C641G", "A672G", "G712A", "C713G", "T734G", "G740A", "G771C", "A774C", "A820G", "C827T", "A833G", "T852A", "G906A", "G908A", "C1040T", "C1060A", "T1148C", "C1169T", "A1199G", "C1245T", "G1313A", "A1329C", "C1330A", "A1343C", "A1349T", "G1404A", "T1421C", "T1427G", "A1450G", "G1455A", "G1486A", "C1501T", "C1514T", "T1517C", "A1543G", "C1556A", "A1567G", "G1687A", "A1691G", "T1729G", "A1736G", "C1767A", "A1781C", "C1782T", "G1794A", "A1819G", "G1849A", "A1903C", "A1908G", "G1968A", "A2002G", "A2020G", "T2024C", "C2075A", "G2134A", "C2135T", "T2171C", "A2185G", "C2263T", "A2332G", "G2341A", "T2365C", "T2393C", "A2419G", "C2452T", "A2455G", "T2542C", "G2548A", "A2611G", "G2686A", "G2710A", "A2713G", "G2816A", "G2830A", "A2836G", "C2909G", "A2920G", "A2951G", "A2977G", "T3059G", "G3094A", "C3095T", "A3097C", "A3192G", "G3221T", "A3295G", "T3359C", "T3418C", "T3497C", "A3503G", "A3535G", "T3544G", "G3664A", "G3694A", "C3763T", "G3796A", "G3846A", "G3866A", "C3962T", "A4084G", "A4109G", "C4123T", "T4135C", "A4145G", "G4267A", "G4279A", "T4291G", "A4417G", "C4428T", "G4516A", "C4569T", "T4676C", "G4695A", "G4696A", "C4715T", "C4761T", "G4779A", "C4800T", "T4827C", "T4832A", "G4862A", "T4886G", "G4887C", "T4967C", "C5019T", "A5046G", "G5087A", "C5221T", "C5242T", "C5294T", "G5305A", "T5314C", "A5335G", "G5359A", "A5397C", "T5415C", "T5424C", "C5447A", "G5482A", 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"T6838A", "A6840C", "G6848A", "A6854G", "T6856G", "A6868G", "A6900T", "A6931C", "-6957G", "A6960C", "G6963A", "A6965G", "C6966A", "T6967A", "-6968T", "-6969G", "-6970G", "-6972G", "-6978A", "C6984T", "A6986G", "C6993G", "T6994G", "-6996G", "-6997A", "-6998G", "-6999A", "-7000A", "-7001A", "-7002A", "-7009A", "A7040G", "A7056G", "A7065G", "A7090T", "T7105C", "C7156G", "A7161G", "C7165T", "G7168A", "T7322G", "G7333A", "A7373G", "C7489A", "G7508A", "A7570G", "C7574A", "T7579C", "A7604G", "G7608C", "T7624C", "G7633A", "T7691A", "T7692C", "T7703C", "G7712A", "A7721G", "A7722T", "A7732C", "A7744G", "A7873G", "T7879C", "A7929G", "A7939C", "C7941A", "A7963C", "A8010C", "T8121G", "C8146T", "T8164C", "T8182C", "A8193G", "G8264A", "G8267T", "G8280T", "G8304C", "C8320A", "T8321G", "T8322C", "G8335A", "G8365A", "A8367C", "G8368C", "-8374G", "C8382G", "G8385A", "A8405G", "T8411C", "A8494C", "G8537A", "T8543C", "T8568G", "A8597G", "A8656G", "C8688A", "C8699A", "T8708A", "C8720T", "T8740C", "A8744G", "A8746T", "A8750C", "T8759C", "C8810T", "G8814A", "A8819G", "C8825T", "A8909G", "G8955A", "T8993C", "C9133T", "A9135G"], "INT": ["S24N", "V31I", "T112A", "T124A", "T218I", "A265V"], "RT-p51": ["P14S", "V241I", "P272A", "T286A", "S322A", "Q334Y", "K366R", "A376S", "T400A"], "RT-p66": ["P14S", "V241I", "P272A", "T286A", "S322A", "Q334Y", "K366R", "A376S", "T400A", "S468P", "T470A", "H483Q"], "gp120": ["S1N", "K18R", "E19D", "T21N", "D29N", "V56T", "E78D", "Q86E", "V106C", "-107G", "-109D", "T110S", "N111I", "-116L", "G117R", "T134A", "S136D", "I137R", "R138S", "M141K", "Q142K", "E144V", "K150R", "N158K", "T161S", "R164K", "I173V", "T174K", "V180T", "S228T", "A238T", "E240G", "E262N", "V264I", "T269I", "-282A", "G284-", "E294Q", "I305L", "K309A", "N312D", "K320R", "R322G", "F325L", "-326N", "-328I", "K329S", "V332I", "N334E", "N349I", "A361K", "-368S", "-370E", "T371W", "-372N", "-373G", "-375K", "-377L", "N378D", "T380R", "-381G", "-382E", "-383N", "I396V", "E401G", "K404R", "S418L", "S433T", "E436G"], "gp41": ["L7V", "V69I", "L91I", "T101A", "S102T", "D109N", "E110K", "K122R", "L130T", "E137K", "N140V", "E143D", "H209R", "P213Q", "E220D", "L273R", "A281V", "K297R", "V321I", "V322L", "R334T", "L340A"], "nef": ["S8H", "S9P", "-11S", "P14A", "A15T", "N51T", "L76V", "K105R", "H116N", "V133T", "Y135F", "E158K", "D205N"], "p17": ["V84T", "K91R", "E93D", "D102E", "K113E", "S126K"], "p2": ["N9S", "A11T"], "p24": ["A14P", "I15L", "K30R", "S41T", "V59I", "T110N", "T200H", "G225S"], "p6": ["S3N", "F17C", "P30T", "A39T", "N47S"], "p7": ["R7K", "T12I", "K34R"], "pro": ["E35D", "R57K", "L63P", "L93I"], "rev": ["T15V", "F21R", "T31P", "S67P", "P100S", "S106P", "S112P"], "tat": ["V36K", "A58S", "D61G", "V67A", "S68T", "T74A", "K85T"], "vif": ["I31S", "G37K", "V65I", "N101H", "I154V"], "vpr": ["V37I", "Q77R", "R85Q"], "vpu": ["Q2L", "L7A", "A15V", "A16T", "L42I", "L64F", "V65M", "-69Y", "H73-", "L82*"]}, "labels": {"aa": "INT: S24N, V31I, T112A, T124A, T218I, A265V; RT-p51: P14S, V241I, P272A, T286A, S322A, Q334Y, K366R, A376S, T400A; RT-p66: P14S, V241I, P272A, T286A, S322A, Q334Y, K366R, A376S, T400A, S468P, T470A, H483Q; gp120: S1N, K18R, E19D, T21N, D29N, V56T, E78D, Q86E, V106C, -107G, -109D, T110S, N111I, -116L, G117R, T134A, S136D, I137R, R138S, M141K, Q142K, E144V, K150R, N158K, T161S, R164K, I173V, T174K, V180T, S228T, A238T, E240G, E262N, V264I, T269I, -282A, G284-, E294Q, I305L, K309A, N312D, K320R, R322G, F325L, -326N, -328I, K329S, V332I, N334E, N349I, A361K, -368S, -370E, T371W, -372N, -373G, -375K, -377L, N378D, T380R, -381G, -382E, -383N, I396V, E401G, K404R, S418L, S433T, E436G; gp41: L7V, V69I, L91I, T101A, S102T, D109N, E110K, K122R, L130T, E137K, N140V, E143D, H209R, P213Q, E220D, L273R, A281V, K297R, V321I, V322L, R334T, L340A; nef: S8H, S9P, -11S, P14A, A15T, N51T, L76V, K105R, H116N, V133T, Y135F, E158K, D205N; p17: V84T, K91R, E93D, D102E, K113E, S126K; p2: N9S, A11T; p24: A14P, I15L, K30R, S41T, V59I, T110N, T200H, G225S; p6: S3N, F17C, P30T, A39T, N47S; p7: R7K, T12I, K34R; pro: E35D, R57K, L63P, L93I; rev: T15V, F21R, T31P, S67P, P100S, S106P, S112P; tat: V36K, A58S, D61G, V67A, S68T, T74A, K85T; vif: I31S, G37K, V65I, N101H, I154V; vpr: V37I, Q77R, R85Q; vpu: Q2L, L7A, A15V, A16T, L42I, L64F, V65M, -69Y, H73-, L82*"}}}]}]}]}, {"name": "B_NODE_0000042", "node_attrs": {"div": 0.1433, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C641G", "T1427A", "G3019A", "C5221T", "G5845A", "-6170G", "A6275G", "T6735A", "T7159C", "A7373C", "C7801T", "G8105A", "G8487-", "A8503C", "C9012T"], "gp120": ["M141V"], "gp41": ["V24L", "A268T"], "nef": ["D54A", "L85V"], "rev": ["S86N"], "tat": ["N24T", "T39I"], "vpr": ["R85P"], "vpu": ["L27F", "D80N"]}, "labels": {"aa": "gp120: M141V; gp41: V24L, A268T; nef: D54A, L85V; rev: S86N; tat: N24T, T39I; vpr: R85P; vpu: L27F, D80N"}}, "children": [{"name": "B_NODE_0000043", "node_attrs": {"div": 0.15326, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["T534G", "A566G", "G599A", "G614T", "C749A", "G810A", "G818A", "T852A", "T1421C", "G1455A", "A1458G", "C1460T", "A1461G", "A1525G", "A1664G", "T1679C", "A1781G", "G1794A", "G2027A", "A2519G", "A2524G", "G2828A", "G2869A", "G2887A", "G3477A", "C3500A", "T3567C", "G4051A", "G4685A", "C4726A", "A4888G", "T4976C", "A5186G", "G5575A", "T5626G", "T5627C", "C5639G", "C5654T", "T5707A", "T5708G", "G6020A", "T6024A", "C6192A", "G6198C", "C6202G", "-6215A", "-6216T", "C6278A", "C6318A", "G6323-", "T6328-", "T6331-", "T6337-", "C6361T", "A6481G", "C6489A", "G6604A", "T6641A", "A6723T", "A6734G", "C6800A", "T6808C", "T6835C", "A6840G", "A6841C", "A6960-", "A6962-", "G6963-", "T6964-", "A6965-", "C6966-", "T6967-", "A7163-", "C7164-", "C7165-", "T7630C", "G7631A", "T7642A", "G7676A", "T7691A", "A7796T", "A7799C", "A7915G", "G8079A", "A8152G", "G8204A", "C8221T", "G8242A", "C8331T", "-8374G", "T8375C", "C8491-", "G8502A", "C8676T", "A8739G", "A8796G", "G8805A", "G8875A", "G8888A", "G8922A"], "RT-p51": ["I142V", "V245M", "T400A"], "RT-p66": ["I142V", "V245M", "T400A", "R461K", "L469I", "L491S"], "gp120": ["V56I", "V57E", "-107N", "T112I", "Q142K", "P155Q", "Y290F", "-328S", "T371-"], "gp41": ["E121D", "K122R", "L130I", "T165S", "N166H", "R259H", "V301I", "A343I"], "nef": ["-11G"], "p17": ["R30K", "S67A", "E93D"], "p24": ["I15L", "V27I", "S41T"], "p6": ["A39T"], "p7": ["K20R"], "pro": ["V77I"], "rev": ["I102V"], "vif": ["R19S", "T47N", "N101G"], "vpu": ["A11G", "A16V", "L34R"]}, "labels": {"aa": "RT-p51: I142V, V245M, T400A; RT-p66: I142V, V245M, T400A, R461K, L469I, L491S; gp120: V56I, V57E, -107N, T112I, Q142K, P155Q, Y290F, -328S, T371-; gp41: E121D, K122R, L130I, T165S, N166H, R259H, V301I, A343I; nef: -11G; p17: R30K, S67A, E93D; p24: I15L, V27I, S41T; p6: A39T; p7: K20R; pro: V77I; rev: I102V; vif: R19S, T47N, N101G; vpu: A11G, A16V, L34R"}}, "children": [{"name": "MF109395", "node_attrs": {"div": 0.20189000000000001, "accession": "MF109395", "clade_membership": {"value": "B"}, "country": {"value": "GB"}, "date": {"value": 2014.0}, "Strain_name": {"value": "13612_1_11.3"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "A388G", "C456T", "C467T", "G485A", "A494C", "C503T", "A530G", "C536T", "C558T", "T567C", "G607A", "G612A", "A676G", "G693A", "A705-", "A706-", "C707-", "G712A", "T734A", "C747A", "A749G", "G770A", "G771C", "A774C", "C902T", "C926A", "A1025G", "A1073G", "T1094C", "C1118T", "A1142G", "A1157G", "C1182T", "G1192A", "C1211T", "T1263A", "T1344C", "T1358C", "G1394A", "A1433C", "C1439T", "G1443T", "A1446-", "C1447-", "A1448-", "T1452A", "A1473C", "A1485G", "T1505C", "T1511C", "T1547C", "G1562A", "C1598T", "G1619A", "A1643G", "G1713A", "A1714T", "A1736G", "A1740G", "A1746G", "G1769A", "T1771C", "T1792C", "T1797G", "G1804A", "A1894G", "A1903T", "G1920A", "G1942A", "G1981C", "C1986T", "C1987T", "C1996T", "A2026G", "A2059G", "T2095C", "C2098T", "A2203G", "A2210G", "A2260C", "G2473A", 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"G5087A", "A5112G", "A5119G", "G5143A", "T5170G", "G5187C", "T5203C", "G5212A", "A5213G", "C5250A", "T5260C", "G5267A", "G5275A", "A5284G", "A5291G", "A5355T", "G5359C", "A5373C", "C5406T", "T5424C", "C5438A", "C5447A", "T5448A", "T5475C", "A5493G", "C5495A", "G5546A", "G5548A", "C5554A", "A5556C", "A5560G", "C5567T", "T5578C", "C5611-", "A5612-", "A5613-", "A5622C", "A5623G", "G5647A", "G5653A", "A5659G", "C5679T", "A5685G", "G5700A", "G5747T", "A5751C", "T5778C", "A5784G", "-5800A", "-5805A", "-5806A", "-5807G", "-5809G", "-5810G", "T5836A", "G5856A", "C5862T", "A5863G", "A5869T", "A5938T", "G5948T", "G5954A", "A5955G", "T5964C", "G6029A", "A6031G", "G6037A", "A6158G", "-6172G", "A6173-", "A6174-", "A6176-", "A6177-", "T6178-", "G6179-", "T6181-", "A6182-", "C6183-", "T6184-", "A6185-", "A6186-", "T6187-", "A6188-", "C6189-", "C6190-", "T6199A", "A6208-", "A6209-", "-6217T", "A6219T", "G6220A", "G6261A", "A6265G", "A6266G", "G6269C", "A6270C", "A6273G", "G6274A", "G6275A", "G6277T", 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"A7189G", "G7190A", "C7201T", "T7250C", "G7291A", "A7313T", "A7322G", "C7328T", "T7398A", "T7400C", "A7427C", "T7433C", "G7508A", "G7513A", "A7532T", "A7533C", "G7552A", "T7567A", "A7604G", "C7625T", "G7627T", "A7632G", "A7641G", "A7666T", "A7677G", "C7701A", "G7720A", "A7722G", "C7723T", "A7755C", "G7759A", "G7773A", "A7795T", "C7941A", "A7943C", "A7962C", "G7965A", "A7971G", "G7989A", "G8010C", "A8023C", "A8036C", "T8122C", "T8145C", "T8164C", "G8170C", "T8176C", "C8215T", "G8255A", "A8273G", "C8277G", "A8284G", "T8292G", "T8302G", "T8321G", "T8322C", "G8329A", "G8330A", "C8336G", "A8338G", "G8342A", "A8364T", "A8367G", "-8370A", "A8378G", "C8382T", "G8393A", "A8396C", "G8404A", "G8409-", "C8410-", "T8411-", "G8412-", "A8413-", "G8414-", "C8415-", "A8425T", "A8438G", "C8445A", "G8446A", "C8480T", "C8485T", "A8486-", "C8488-", "A8489-", "G8490-", "C8514G", "G8528A", "T8543C", "T8568G", "C8585T", "A8597T", "C8640T", "G8654A", "A8657G", "T8666C", "C8688A", "T8711C", "C8720T", "A8804G", "G8807T", "G8808-", "C8809-", "C8810-", "T8813C", "G8814A", "A8816C", "G8817A", "C8825T", "A8827G", "T8835C", "A8837G", "G8886A", "T8887A", "T8918C", "C8921T", "C8934A", "T8935A", "C8937T", "A8947T", "A8952-", "A8953-", "G8954-", "G8955A"], "INT": ["E10D", "D41N", "I101L", "K111T", "S119G", "T124N", "T125A", "V126L", "A205S", "T206S", "S230N", "D256E"], "RT-p51": ["T39A", "S162C", "R211G", "E224D", "M245K", "P272A", "T286A", "A288S", "V292I", "K311R", "I329V", "Q334L", "F346Y", "M357T", "K390R"], "RT-p66": ["T39A", "S162C", "R211G", "E224D", "M245K", "P272A", "T286A", "A288S", "V292I", "K311R", "I329V", "Q334L", "F346Y", "M357T", "K390R", "D460N", "V467I", "Q480H"], "gp120": ["S1N", "T3V", "K5N", "A32S", "D34S", "V37A", "E59K", "N102D", "N108S", "-109T", "T110R", "N111I", "I112V", "N113-", "S114-", "S115-", "G117-", "E122-", "S136D", "I137M", "R138G", "D139P", "K140R", "V141I", "D157-", "N158-", "D159-", "N160-", "T161-", "S162-", "I173V", "V180I", "V227I", "V243I", "K254R", "S263T", "S278G", "I281M", "R287K", "A288T", "R307G", "Q316M", "E323D", "-326K", "K329S", "V332I", "N334K", "Q335A", "Q361K", "S365-", "T366-", "W367-", "N369-", "N378-", "N379-", "T380-", "D384-", "T385-", "R391K", "K393R", "M406I", "R412A", "Q414H", "N432-", "N433-", "N434-", "N435-", "E436-", "T437-", "D446N"], "gp41": ["I4L", "M7V", "L9F", "L32Q", "N42H", "V69I", "K77S", "T101A", "L108F", "E110R", "D113G", "D125S", "D129G", "T133N", "N140S", "E151A", "S157N", "P213Q", "E220A", "G221E", "E223G", "R229K", "G235S", "R236P", "I245L", "V318I", "R324G", "A325G", "F326C", "L330R", "L340A", "L345V"], "nef": ["S8C", "S9G", "-10M", "P14S", "E18D", "R21K", "A23-", "E24-", "P25-"], "p17": ["K18R", "L75F", "D93N", "D102E", "K114R", "A120T", "N124-", "S126N"], "p2": ["V7L", "T8N", "N9T", "S10T", "T12V", "I13-"], "p24": ["L6M", "A14P", "R154K", "S178T"], "p6": ["E12I", "T21A", "T23A", "I31T", "L38S", "S40A", "R42K"], "p7": ["R7G", "R26K"], "pro": ["E35D", "R41K", "Q61H"], "rev": ["E11K", "K14T", "L18F", "E32A", "R53Q", "I59L", "Y63S", "S67P", "S92P", "S106P", "A108P"], "tat": ["A21D", "T24K", "I39M", "T40K", "R57K", "A58T", "Q60N", "S62G", "T64I", "V67I", "S68P", "R78S", "K85Q", "E86K"], "vif": ["T20M", "K33R", "F39V", "S46N", "I57V", "T74A", "L109M", "S116T", "E117G", "I128R", "A152V", "T155K", "K158R", "I159R", "K176E", "Q178R", "S186N"], "vpr": ["Q3R", "N28A", "T49N", "A55T", "I60M", "I63V", "T84S"], "vpu": ["P3L", "L4H", "Q5V", "I6A", "L7-", "V14I", "V16I", "I18V", "R47I", "E48D", "V65M", "M67R", "W77R"]}, "labels": {"aa": "INT: E10D, D41N, I101L, K111T, S119G, T124N, T125A, V126L, A205S, T206S, S230N, D256E; RT-p51: T39A, S162C, R211G, E224D, M245K, P272A, T286A, A288S, V292I, K311R, I329V, Q334L, F346Y, M357T, K390R; RT-p66: T39A, S162C, R211G, E224D, M245K, P272A, T286A, A288S, V292I, K311R, I329V, Q334L, F346Y, M357T, K390R, D460N, V467I, Q480H; gp120: S1N, T3V, K5N, A32S, D34S, V37A, E59K, N102D, N108S, -109T, T110R, N111I, I112V, N113-, S114-, S115-, G117-, E122-, S136D, I137M, R138G, D139P, K140R, V141I, D157-, N158-, D159-, N160-, T161-, S162-, I173V, V180I, V227I, V243I, K254R, S263T, S278G, I281M, R287K, A288T, R307G, Q316M, E323D, -326K, K329S, V332I, N334K, Q335A, Q361K, S365-, T366-, W367-, N369-, N378-, N379-, T380-, D384-, T385-, R391K, K393R, M406I, R412A, Q414H, N432-, N433-, N434-, N435-, E436-, T437-, D446N; gp41: I4L, M7V, L9F, L32Q, N42H, V69I, K77S, T101A, L108F, E110R, D113G, D125S, D129G, T133N, N140S, E151A, S157N, P213Q, E220A, G221E, E223G, R229K, G235S, R236P, I245L, V318I, R324G, A325G, F326C, L330R, L340A, L345V; nef: S8C, S9G, -10M, P14S, E18D, R21K, A23-, E24-, P25-; p17: K18R, L75F, D93N, D102E, K114R, A120T, N124-, S126N; p2: V7L, T8N, N9T, S10T, T12V, I13-; p24: L6M, A14P, R154K, S178T; p6: E12I, T21A, T23A, I31T, L38S, S40A, R42K; p7: R7G, R26K; pro: E35D, R41K, Q61H; rev: E11K, K14T, L18F, E32A, R53Q, I59L, Y63S, S67P, S92P, S106P, A108P; tat: A21D, T24K, I39M, T40K, R57K, A58T, Q60N, S62G, T64I, V67I, S68P, R78S, K85Q, E86K; vif: T20M, K33R, F39V, S46N, I57V, T74A, L109M, S116T, E117G, I128R, A152V, T155K, K158R, I159R, K176E, Q178R, S186N; vpr: Q3R, N28A, T49N, A55T, I60M, I63V, T84S; vpu: P3L, L4H, Q5V, I6A, L7-, V14I, V16I, I18V, R47I, E48D, V65M, M67R, W77R"}}}, {"name": "JQ403059", "node_attrs": {"div": 0.19468000000000002, "accession": "JQ403059", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2007.0}, "Strain_name": {"value": "HIV_US_BID_V3020_2007"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A368T", "G369A", "G379C", "A417C", "G471C", "T473C", "G508A", "G520A", "T549A", "A562G", "A571T", "G608A", "G641T", "G644A", "G654A", "A655T", "A661G", "A675C", "A676C", "G678A", "C713A", "G755A", "A774T", "A857T", "G935A", "T978C", "T992G", "A1002G", "A1025C", "A1089C", "A1115T", "G1160A", "A1199G", "G1205A", "G1271T", "G1313A", "G1328A", "C1354G", "C1362T", "C1403T", "T1409C", "G1486A", "A1500C", "A1543G", "G1552A", "A1580G", "A1694G", "A1714C", "C1721T", "C1724T", "A1725G", "T1783A", "T1796C", "T1873C", "C1985T", "C2044T", "G2065A", "C2075A", "A2227G", "G2230A", "G2248A", "A2291-", "A2317G", "C2386T", "T2527C", "A2560G", "T2605C", "G2821A", "A2920G", "T3049C", "T3068C", "C3100T", "A3115G", "G3169A", "A3217G", "G3221A", "A3224C", "C3225T", "A3226G", "C3252T", "A3277G", "C3303T", "C3319T", "T3368C", "G3427A", "C3475T", "G3490A", "T3644A", "G3651A", "G3664A", "G3694A", "G3695A", "A3718G", "A3745G", "T3865G", "A3890T", "T4042C", "A4145G", "T4207C", "T4258C", "G4263A", "A4264C", "G4279A", "G4345A", "G4376A", "C4475A", "G4495A", "A4525C", "A4643T", "T4674C", "G4684A", "A4688G", "T4712C", "C4728A", "A4774G", "C4803A", "C4820A", "T4840C", "G4856A", "A4949G", "A4966G", "C4978A", "G4982C", "T4991C", "A5005G", "A5033G", "A5049G", "T5081C", "C5086T", "T5102C", "G5165A", "T5188A", "A5213C", "T5214C", "G5225A", "G5226A", "C5237T", "A5247C", "A5282C", "T5319A", "A5345G", "C5356T", "G5396A", "A5397C", "G5427A", "A5432G", "G5437C", "A5462G", "T5471A", "C5478T", "A5480C", "G5482C", "T5483A", "T5487C", "T5576G", "T5577C", "T5578G", "C5579A", "A5603G", "C5620G", "A5622G", "A5659T", "C5688T", "A5689G", "A5704C", "G5711A", "G5717A", "A5720G", "A5745C", "A5787T", "T5788-", "T5789-", "A5790-", "T5791-", "C5792-", "A5793-", "G5794-", "C5795-", "A5796-", "T5798A", "T5799G", "-5800G", "T5801A", "G5802A", "-5805G", "-5806C", "-5807T", "-5809C", "-5810T", "G5811T", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5828C", "G5861A", "C5862G", "A5867C", "C5878T", "C5924T", "T5956A", "A5983G", "T5992C", "G6023A", "G6079A", "T6085G", "C6115T", "C6116T", "G6121A", "A6130G", "T6171C", "-6172T", "-6175G", "-6180G", "T6187C", "C6189T", "T6196A", "T6199G", "A6200G", "G6201A", "-6203G", "-6204T", "-6205G", "-6206A", "-6207T", "A6209G", "-6210G", "-6211A", "-6212C", "-6213A", "-6214A", "-6217G", "A6230G", "A6251G", "C6253T", "A6257T", "G6267A", "G6280A", "A6303G", "A6304C", "G6311A", "-6323C", "A6326G", "-6328G", "-6331A", "-6337A", "T6347A", "G6354A", "C6364A", "C6397G", "C6441T", "T6460G", "G6463A", "A6464C", "C6496T", "C6545T", "G6577A", "A6594C", "A6595C", "A6602T", "A6605G", "C6619T", "C6642G", "A6648C", "A6669G", "C6673T", "T6688C", "-6703A", "T6720G", "T6721G", "A6767C", "C6777T", "A6779G", "A6780C", "C6790A", "A6797G", "G6802T", "C6807T", "G6819A", "A6822C", "A6826G", "C6843A", "C6850A", "A6859C", "G6894T", "A6913G", "A6937G", "-6956A", "-6957A", "A6959G", "-6960T", "-6975C", "-6977G", "-6978A", "-6979A", "-6980G", "-6981A", "-6982G", "-6983A", "A6990G", "-6995A", "-6996G", "-6997A", "-6998G", "-6999G", "-7000A", "-7001A", "-7002A", "-7004G", "-7005A", "-7006C", "-7009A", "C7020A", "A7090G", "A7096G", "C7124T", "T7130C", "A7158G", "A7169G", "C7170T", "A7241G", "T7284C", "A7312G", "G7375A", "G7440A", "C7463A", "G7517C", "C7547A", "G7589T", "G7627A", "A7632C", "G7633A", "G7640C", "A7666C", "G7688A", "G7689A", "A7700T", "A7711G", "G7717A", "A7750G", "G7753A", "A7755G", "G7807A", "A7818G", "G7846A", "G7862A", "A7873G", "A7912G", "T7932C", "C7939T", "A8006G", "T8008A", "C8047T", "G8061T", "C8078A", "A8099G", "A8104G", "G8144A", "G8170A", "G8181T", "G8219A", "G8245A", "T8257C", "G8280T", "A8288T", "T8290C", "C8296T", "A8311C", "G8323A", "G8330C", "-8370C", "G8385C", "C8386A", "T8387G", "G8388A", "C8406A", "G8409A", "G8414A", "G8432A", "C8450T", "C8451T", "A8458G", "A8469C", "-8487C", "-8491G", "G8537A", "A8564G", "T8595G", "T8666A", "A8726C", "A8746G", "T8747G", "T8757C", "G8787C", "A8788C", "G8789T", "G8807A", "A8812C", "A8823G", "T8829G", "G8830T", "C8831G", "T8843C", "G8848A", "G8852A", "T8887C", "C8948T", "C8964T", "A8965G", "C8967T", "T9029C", "G9040A", "T9074C"], "INT": ["S39C", "T124A", "G163D", "V201I", "L234I"], "RT-p51": ["K66-", "A376T", "T377L", "T386I", "T403I"], "RT-p66": ["K66-", "A376T", "T377L", "T386I", "T403I", "L517I", "S519N", "A534T"], "gp120": ["T3R", "K5Q", "D34E", "E57K", "H77Q", "V106A", "-109V", "S114G", "S115T", "-116N", "-118T", "-119N", "-120I", "-121M", "I126V", "I133V", "T135S", "S136G", "R138K", "K150S", "V153I", "D157H", "N158E", "D159E", "T161N", "L165M", "S167N", "A196V", "D202E", "K204Q", "E247A", "T250S", "N251D", "E265A", "N272S", "F289W", "I305L", "A308V", "K309A", "N312K", "K315E", "Q316N", "A318V", "R322K", "E323A", "-326N", "T330-", "Q335H", "S347I", "-368N", "N369V", "-374T", "-375E", "-376E", "-377T", "N379S", "-381R", "-382G", "-383N", "P389Q", "N432G", "E436N", "T437S", "T439E", "I463V", "V477A"], "gp41": ["R46K", "L54M", "V72L", "L82M", "A96S", "E110T", "D113Q", "D125N", "D129N", "T133S", "E151G", "K172R", "V187I", "L210P", "C253F", "H259N", "I266V", "A281I", "S293I", "A306T", "I329F", "I343L"], "nef": ["-10L", "A15Q", "V16I", "A23T", "K39R", "I43L", "A49P", "A50G", "A54T", "D108E", "Y135W", "F139L", "E149P", "K152E", "E155K", "N157T", "N161D", "C163V", "S169N", "R178K", "V182A"], "p17": ["E12K", "R15T", "K28Q", "V46L", "R58K", "G62E", "S72T", "K76R", "Y79F", "K91R", "E107M", "N109S", "K114P", "A115T", "S126R"], "p2": ["A11T", "T12A", "I13V"], "p24": ["M68I", "H87Q", "I91V", "E98D", "N120H", "E128D", "E180D", "A208G"], "p6": ["E12A", "R16G", "L35Q"], "p7": ["R7K", "T12P", "R29K"], "pro": ["L63S", "L93I"], "rev": ["F21A", "L22I", "P31S", "S54T", "P77Q", "D84G", "N86D", "S99N", "A108T", "E111D"], "tat": ["R7N", "K19R", "A21P", "K29R", "F32Y", "Q35P", "V36H", "V67S", "S68D", "S75P", "P77L"], "vif": ["Y30H", "H48N", "K63R", "H73N", "D78E", "V85A", "H127R", "P131H", "R132S", "N140S", "T151A", "T155A", "A167V"], "vpr": ["E21K", "N28G", "V37P", "G41N", "H45Y", "E48A", "I60L", "F72Y", "T84I", "P85R"], "vpu": ["Q5E", "L7A", "I18L", "I28V", "I33L", "R35K", "R37K", "K38R", "E60D", "L61Q", "S62E", "A63E", "V65L", "E66-", "M67-", "G68-", "-69V", "-70E", "-71M", "-72G", "H74P"]}, "labels": {"aa": "INT: S39C, T124A, G163D, V201I, L234I; RT-p51: K66-, A376T, T377L, T386I, T403I; RT-p66: K66-, A376T, T377L, T386I, T403I, L517I, S519N, A534T; gp120: T3R, K5Q, D34E, E57K, H77Q, V106A, -109V, S114G, S115T, -116N, -118T, -119N, -120I, -121M, I126V, I133V, T135S, S136G, R138K, K150S, V153I, D157H, N158E, D159E, T161N, L165M, S167N, A196V, D202E, K204Q, E247A, T250S, N251D, E265A, N272S, F289W, I305L, A308V, K309A, N312K, K315E, Q316N, A318V, R322K, E323A, -326N, T330-, Q335H, S347I, -368N, N369V, -374T, -375E, -376E, -377T, N379S, -381R, -382G, -383N, P389Q, N432G, E436N, T437S, T439E, I463V, V477A; gp41: R46K, L54M, V72L, L82M, A96S, E110T, D113Q, D125N, D129N, T133S, E151G, K172R, V187I, L210P, C253F, H259N, I266V, A281I, S293I, A306T, I329F, I343L; nef: -10L, A15Q, V16I, A23T, K39R, I43L, A49P, A50G, A54T, D108E, Y135W, F139L, E149P, K152E, E155K, N157T, N161D, C163V, S169N, R178K, V182A; p17: E12K, R15T, K28Q, V46L, R58K, G62E, S72T, K76R, Y79F, K91R, E107M, N109S, K114P, A115T, S126R; p2: A11T, T12A, I13V; p24: M68I, H87Q, I91V, E98D, N120H, E128D, E180D, A208G; p6: E12A, R16G, L35Q; p7: R7K, T12P, R29K; pro: L63S, L93I; rev: F21A, L22I, P31S, S54T, P77Q, D84G, N86D, S99N, A108T, E111D; tat: R7N, K19R, A21P, K29R, F32Y, Q35P, V36H, V67S, S68D, S75P, P77L; vif: Y30H, H48N, K63R, H73N, D78E, V85A, H127R, P131H, R132S, N140S, T151A, T155A, A167V; vpr: E21K, N28G, V37P, G41N, H45Y, E48A, I60L, F72Y, T84I, P85R; vpu: Q5E, L7A, I18L, I28V, I33L, R35K, R37K, K38R, E60D, L61Q, S62E, A63E, V65L, E66-, M67-, G68-, -69V, -70E, -71M, -72G, H74P"}}}]}, {"name": "B_NODE_0000044", "node_attrs": {"div": 0.14578000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G607A", "A1567G", "A1643G", "C2075A", "G2230A", "T2908C", "G3651A", "A3989G", "G5359C", "C5614T", "-6211G", "G6260A", "T6457C", "A6773G", "A6836-", "A6837-", "T6838-", "-6998G", "-6999G", "-7000A", "-7001A", "-7002A", "C7156T", "A7847G", "G8018A", "G8267T", "G8304C", "-8374T", "T8595G", "T8829A"], "INT": ["I72V"], "RT-p51": ["D123E"], "RT-p66": ["D123E", "S519N"], "gp120": ["-116S", "R307G"], "gp41": ["I182V", "A281V", "V322L"], "nef": ["V133T", "C163S", "M194V"], "p17": ["D102E"], "p6": ["T22A"], "p7": ["K34R"], "pro": ["L93I"], "rev": ["G57E"], "vpr": ["V37I"], "vpu": ["P3S"]}, "labels": {"aa": "INT: I72V; RT-p51: D123E; RT-p66: D123E, S519N; gp120: -116S, R307G; gp41: I182V, A281V, V322L; nef: V133T, C163S, M194V; p17: D102E; p6: T22A; p7: K34R; pro: L93I; rev: G57E; vpr: V37I; vpu: P3S"}}, "children": [{"name": "B_NODE_0000045", "node_attrs": {"div": 0.15188000000000001, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["G485A", "G614T", "G1192A", "A1361C", "G1474A", "A1543G", "T2206C", "C2464A", "A2937G", "A2956G", "G2984A", "G3091A", "G3221A", "G3293A", "G3490A", "G3553A", "A3709G", "G3755A", "G3796A", "A3868G", "G4237A", "A4644G", "C4724T", "A4773G", "G4802A", "G4861A", "G4887A", "T4969G", "G5085A", "A5362G", "G5463A", "C5611A", "A5781C", "G5842A", "G5856A", "A6174G", "-6175G", "-6180C", "-6205G", "-6207G", "-6215A", "-6216T", "-6217G", "A6221G", "A6222G", "C6238T", "A6595C", "A6734G", "-6980G", "-6982G", "-6983T", "-6995A", "-6997A", "-7004G", "-7005A", "-7006C", "-7009A", "A7169G", "C7170T", "A7269G", "A7322G", "G7589A", "G7631C", "G7658C", "C7678T", "G7720A", "G7726A", "T7921C", "A8006G", "G8010T", "G8385A", "A8469C", "G8654A", "A8893G"], "RT-p51": ["K281R", "E297K", "A376T"], "RT-p66": ["K281R", "E297K", "A376T"], "gp120": ["S1N", "V106L", "-107R", "-109A", "K123G", "-383N", "T439V", "K472R"], "gp41": ["M7V", "A96T", "E110Q", "E119Q"], "nef": ["A15T", "K184R"], "p24": ["R154K"], "p7": ["R3K"], "vif": ["T20A", "K63E", "I128R", "A167T"], "vpr": ["Q86R"], "vpu": ["E58D", "V79I"]}, "labels": {"aa": "RT-p51: K281R, E297K, A376T; RT-p66: K281R, E297K, A376T; gp120: S1N, V106L, -107R, -109A, K123G, -383N, T439V, K472R; gp41: M7V, A96T, E110Q, E119Q; nef: A15T, K184R; p24: R154K; p7: R3K; vif: T20A, K63E, I128R, A167T; vpr: Q86R; vpu: E58D, V79I"}}, "children": [{"name": "KC935957", "node_attrs": {"div": 0.18270000000000003, "accession": "KC935957", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2004.0}, "Strain_name": {"value": "ES11_2004_culture"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A446G", "A512G", "T534G", "A571T", "C662T", "C713T", "C747A", "G818A", "C890T", "A932G", "C1178T", "C1182T", "C1304T", "T1310C", "G1311T", "A1343C", "A1355G", "G1455A", "T1511C", "T1520C", "G1562A", "T1574C", "C1768T", "A1770G", "A1819G", "C1825T", "C1828A", "A1832G", "C1833A", "T1864G", "A1969G", "G1981A", "C1986T", "A2023G", "T2041A", "A2122G", "G2134A", "G2224A", "A2230G", "A2254G", "G2273A", "A2332G", "G2343A", "C2386T", "A2389G", "G2473A", "T2499C", "A2611G", "A2625G", "A2693G", "C2694T", "A2726G", "A2809G", "G2878A", "A2923C", "A2925G", "G2926A", "A2929C", "G2957A", "T3059A", "C3346T", "G3398A", "G3473A", "A3481G", "A3532G", "T3550G", "A3571G", "C3688T", "T3826C", "T3829C", "G3869A", "G3896A", "A3931G", "A3953G", "A3964G", "C4110T", "C4123T", "A4130G", "A4133-", "A4219G", "A4228G", "A4243G", "A4259G", "G4268A", "A4285G", "C4318T", "A4411G", "T4606C", "A4635C", "G4684A", "T4727G", "A4734C", "C4761T", "A4768C", "T4772A", "A4782G", "C4786T", "C4820T", "A4857G", "A4904G", "A4958C", "C4965A", "A5015G", "A5049G", "A5057C", "A5089G", "A5121G", "A5122G", "A5136C", "G5187A", "T5197G", "A5213C", "T5221C", "G5225A", "A5282T", "C5359A", "G5370A", "A5432G", "T5439C", "C5451T", "T5472G", "A5496G", "C5513A", "A5601G", "A5619G", "G5668A", "G5673A", "T5686C", "T5731A", "T5799-", "T5801-", "G5802-", "G5803-", "A5804-", "G5808-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5836G", "A5840C", "A5865G", "A5866C", "T5871C", "A6030G", "A6044G", "C6052T", "A6059G", "A6092G", "A6095G", "C6097T", "G6170C", "-6172G", "A6177G", "A6186G", "C6189T", "T6193G", "G6195A", "-6203G", "-6204A", "-6206A", "-6210C", "A6223G", "A6313C", "G6314A", "T6325C", "T6328A", "A6448C", "C6482T", "A6538G", "T6592C", "A6594C", "T6599C", "A6605G", "A6628G", "G6638A", "T6652G", "C6692T", "A6693C", "-6703A", "G6712C", "G6725A", "A6767C", "A6779C", "A6788G", "A6791G", "T6793A", "A6798G", "C6800A", "A6810T", "A6834C", "T6835G", "-6836A", "-6837A", "-6838T", "A6839G", "A6840C", "A6841C", "C6876A", "T6888C", "C6890A", "A6891T", "A6907G", "A6929T", "G6940A", "T6958-", "A6962G", "T6964A", "A6974-", "T6976-", "-6981A", "A6989G", "-6996G", "A7148G", "T7150A", "T7156G", "G7160A", "A7186G", "G7256A", "A7273G", "G7375A", "A7376G", "T7386G", "A7412G", "G7552A", "G7640C", "T7642G", "G7668A", "G7676A", "G7688A", "G7759A", "T7801C", "G7835A", "C7869T", "G7871A", "A7929G", "A7986G", "A8018G", "C8033A", "T8035C", "C8047T", "A8086G", "G8170A", "A8196G", "T8218C", "G8242A", "T8251C", "T8279G", "C8294A", "T8302C", "A8303C", "C8351T", "G8354A", "-8370C", "G8388A", "G8404A", "A8449G", "A8457-", "T8470A", "A8472-", "C8473-", "A8474-", "A8475-", "G8476-", "T8477-", "A8478-", "G8479-", "C8480-", "A8481-", "A8482-", "T8483-", "A8484-", "C8485-", "A8486-", "C8488-", "A8489-", "G8490-", "C8491-", "T8492-", "A8493-", "A8494-", "C8495-", "A8496-", "A8497-", "T8498-", "G8499-", "C8500-", "T8501-", "G8502-", "C8503-", "T8504-", "T8505-", "G8506-", "T8507-", "G8508-", "C8509-", "G8512T", "A8587G", "T8666G", "A8701T", "T8703C", "T8740C", "C8741T", "T8747C", "G8753A", "C8756T", "T8758A", "G8789T", "A8851T", "G8852A", "T8864G", "C8868T", "G8875A", "T8887C", "G8888A", "C8900T", "C8934A", "T8935A", "G8936A"], "INT": ["V32I", "D41N", "I60V", "T112I", "S119G", "N120-"], "RT-p51": ["V60I", "R83K", "I135T", "D177G", "T200V", "R211G", "K277R", "Q278H", "A288T", "S322T", "V435I"], "RT-p66": ["V60I", "R83K", "I135T", "D177G", "T200V", "R211G", "K277R", "Q278H", "A288T", "S322T", "V435I", "D460N", "A554T"], "gp120": ["T3A", "E4G", "L6S", "E59G", "N64D", "K69E", "I80V", "I81V", "N108S", "N111S", "T112I", "N113T", "S114N", "G117E", "-118R", "-119T", "-121M", "V154I", "N158K", "P210S", "K212T", "E247A", "F249L", "N251D", "E262K", "I266M", "H280S", "A291T", "I305L", "K309Q", "N312D", "T313A", "K315R", "Q316K", "K319I", "-326T", "-328A", "K329-", "P341Q", "M345T", "H346I", "T359S", "-370G", "-372E", "-373S", "N379D", "-381R", "-382G", "N432E", "N434K", "E436K", "V468I"], "gp41": ["T25A", "V28G", "I37V", "D113Q", "D125N", "D129S", "V178I", "T189I", "V190I", "H209R", "E228G", "R236L", "L244I", "N298S", "F326G", "H331N", "R334P"], "nef": ["-10L", "-11V", "V16I", "R21K", "D36G", "K39-", "T44-", "S45-", "S46-", "N47-", "T48-", "A49-", "A50-", "N51-", "N52-", "A53-", "A54-", "C55-", "A56-", "W57-", "K82R", "D108E", "Y120F", "F121L", "F139Y", "E149D", "Q170L", "D174E", "P176S", "R178K", "V182A", "L198K"], "p2": ["A11T"], "p24": ["L6I", "A194S"], "p6": ["A22T", "P30L", "I31V", "N47S", "P49L", "S50*", "Q52K"], "pro": ["T12E"], "rev": ["E57G", "T62N", "Y63H", "R80G", "A108T"], "tat": ["K19R", "F32L", "S46Y", "T74A"], "vif": ["V7A", "D61A", "I66V", "T67I", "K91E", "R92K", "H127N", "T151A", "T155A", "K157N", "K168R", "K179G"], "vpr": ["E6G", "Q11P", "I37L", "G41S", "I60L", "P85Q", "A89T"], "vpu": ["Q2K", "V21I", "F27L", "L42I", "W77G", "D78A"]}, "labels": {"aa": "INT: V32I, D41N, I60V, T112I, S119G, N120-; RT-p51: V60I, R83K, I135T, D177G, T200V, R211G, K277R, Q278H, A288T, S322T, V435I; RT-p66: V60I, R83K, I135T, D177G, T200V, R211G, K277R, Q278H, A288T, S322T, V435I, D460N, A554T; gp120: T3A, E4G, L6S, E59G, N64D, K69E, I80V, I81V, N108S, N111S, T112I, N113T, S114N, G117E, -118R, -119T, -121M, V154I, N158K, P210S, K212T, E247A, F249L, N251D, E262K, I266M, H280S, A291T, I305L, K309Q, N312D, T313A, K315R, Q316K, K319I, -326T, -328A, K329-, P341Q, M345T, H346I, T359S, -370G, -372E, -373S, N379D, -381R, -382G, N432E, N434K, E436K, V468I; gp41: T25A, V28G, I37V, D113Q, D125N, D129S, V178I, T189I, V190I, H209R, E228G, R236L, L244I, N298S, F326G, H331N, R334P; nef: -10L, -11V, V16I, R21K, D36G, K39-, T44-, S45-, S46-, N47-, T48-, A49-, A50-, N51-, N52-, A53-, A54-, C55-, A56-, W57-, K82R, D108E, Y120F, F121L, F139Y, E149D, Q170L, D174E, P176S, R178K, V182A, L198K; p2: A11T; p24: L6I, A194S; p6: A22T, P30L, I31V, N47S, P49L, S50*, Q52K; pro: T12E; rev: E57G, T62N, Y63H, R80G, A108T; tat: K19R, F32L, S46Y, T74A; vif: V7A, D61A, I66V, T67I, K91E, R92K, H127N, T151A, T155A, K157N, K168R, K179G; vpr: E6G, Q11P, I37L, G41S, I60L, P85Q, A89T; vpu: Q2K, V21I, F27L, L42I, W77G, D78A"}}}, {"name": "AY314056", "node_attrs": {"div": 0.18899000000000002, "accession": "AY314056", "clade_membership": {"value": "B"}, "country": {"value": "CA"}, "date": {"value": 1996.0}, "Strain_name": {"value": "WC10C_4"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["C151T", "C227A", "A304T", "G354A", "G365T", "A368C", "T396C", "T422C", "A424G", "G455A", "T473C", "T476C", "A533G", "A562G", "A645G", "G712A", "T734A", "G740A", "T782A", "A803T", "C926T", "G980A", "G989A", "C1062T", "T1263A", "G1313A", "T1334C", "A1352T", "T1409C", "G1443A", "A1445G", "A1449G", "A1450G", "G1499A", "C1501T", "C1558A", "G1567A", "C1656T", "A1657C", "A1715G", "A1743G", "A1765G", "C1767-", "C1768-", "G1769-", "T1771C", "A1852G", "T1854A", "T1868C", "G1892A", "G1906A", "G1936A", "C1960T", "G1968C", "G1972A", "C1996T", "C2010T", "T2043C", "G2198A", "A2216T", "A2220G", "G2224C", "T2440C", "T2476C", "G2580A", "C2626A", "A2665G", "G2683A", "G2704A", "G2727A", "A2738T", "C2739A", "G2821A", "A2842G", "A2875G", "A2951G", "C2960T", "C3013T", "C3095G", "A3103G", "T3172G", "T3181A", "G3205T", "C3207T", "C3223T", "A3259G", "A3264G", "A3268G", "A3277G", "G3364A", "A3454G", "A3503C", "A3543T", "A3565G", "T3602C", "A3630G", "T3644A", "T3652C", "G3686A", "C3691T", "C3756A", "C3763T", "G3770A", "A3775C", "G3814A", "G3925A", "T3970C", "T3977C", "G3989A", "G4060A", "T4117C", "T4135C", "T4144C", "A4148G", "G4150A", "G4194C", "G4252A", "G4262A", "G4263A", "A4375G", "G4376A", "A4407C", "T4412C", "G4459A", "G4495A", "A4544G", "T4655C", "T4679A", "T4701G", "G4746A", "G4764A", "T4772G", "G4778A", "G4856A", "A4860G", "C4890A", "T4891C", "T4914C", "T4917C", "A4956C", "G4963A", "C5038T", "T5047C", "A5057G", "T5188A", "T5203C", "G5212C", "C5222T", "G5233A", "T5239C", "G5257A", "T5293G", "C5303A", "T5314C", "T5430C", "A5462G", "C5563G", "T5577C", "T5578C", "A5587G", "A5613T", "T5616C", "C5620G", "T5627A", "A5628C", "G5629T", "G5647A", "C5651T", "A5655T", "C5679T", "A5689T", "A5694G", "A5718G", "C5727T", "A5751G", "A5784G", "-5800G", "-5805A", "-5806A", "-5807T", "-5809G", "-5810G", "C5827G", "A5845C", "G5861A", "C5916A", "C5917A", "G5933A", "G5954A", "A5955G", "T5964C", "T5974A", "G6020A", "G6023T", "A6025T", "A6065G", "A6076C", "G6170T", "-6172A", "-6203T", "-6204G", "-6206G", "-6210A", "G6261A", "G6277A", "C6278A", "T6299A", "A6333G", "C6336A", "G6379A", "T6393C", "G6430A", "G6451C", "G6463A", "C6489A", "G6547A", "G6577A", "G6593A", "A6594G", "C6619T", "T6637A", "T6641G", "G6647A", "A6648C", "T6652C", "-6697T", "-6698C", "-6699A", "G6704-", "G6705-", "G6773A", "G6774A", "C6777G", "A6779G", "A6780C", "A6781T", "A6797T", "A6798T", "C6807T", "G6819A", "T6828A", "-6830G", "-6831G", "-6832G", "T6849C", "A6855C", "T6856C", "T6916C", "C6935T", "A6936C", "C6938T", "T6946C", "-6956A", "-6957A", "T6961C", "-6968T", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6975C", "-6977G", "-6978A", "-6979A", "-6981G", "A6986C", "A6987T", "-6996C", "G6999A", "A7007C", "A7010T", "A7027G", "C7045T", "A7088G", "G7089C", "T7106A", "T7130C", "A7152G", "C7159T", "A7161G", "G7291A", "A7300G", "T7308C", "T7325C", "T7329C", "G7349C", "C7373A", "T7398A", "A7428G", "C7429T", "G7441A", "T7466C", "G7492A", "G7517A", "T7579C", "T7622A", "T7630A", "G7633A", "A7641G", "T7642C", "A7655T", "G7657A", "C7684T", "G7689A", "C7690A", "C7701G", "A7744G", "G7790A", "A7791G", "C7825T", "A7832G", "A7868T", "C7926T", "T7932C", "C7939T", "C7954A", "T7968C", "T8010C", "T8020C", "C8051A", "G8061T", "G8070T", "C8095A", "A8104G", "A8132C", "G8144A", "C8213T", "C8215T", "G8255A", "G8276A", "C8277T", "G8280A", "T8290C", "C8293T", "A8303G", "C8304T", "G8317A", "G8329A", "G8365-", "T8366-", "A8367-", "G8368-", "T8369-", "C8382G", "T8387G", "A8458G", "-8487C", "C8514G", "G8537A", "G8799A", "T8887A", "G8955A"], "INT": ["M50I", "V72I", "T125A", "G140A", "M154I", "G163K", "I200M", "V201I", "K211T", "I257V"], "RT-p51": ["V35I", "M41L", "E42G", "K43N", "S162N", "D177E", "R211K", "T215Y", "T286A", "Q334E", "E370D", "A371V", "K390R"], "RT-p66": ["V35I", "M41L", "E42G", "K43N", "S162N", "D177E", "R211K", "T215Y", "T286A", "Q334E", "E370D", "A371V", "K390R", "T470P", "H483L", "K512R", "L517I", "V531I", "A554N", "V559I"], "gp120": ["T21K", "A27T", "D34S", "V37A", "V56I", "V57F", "N71D", "E74D", "S116W", "-118K", "-119M", "S136N", "Q142K", "Y149N", "N160S", "T161N", "V180A", "K199N", "E247S", "N261K", "S263A", "E265T", "-282Q", "G284-", "G307K", "A308G", "K309A", "K315L", "A318V", "R322K", "F325Y", "-326G", "V332A", "N334T", "Q361S", "-368N", "-370S", "-372W", "-373N", "-374T", "-375E", "-376G", "-377S", "N378L", "-381T", "-382E", 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"R36S", "H40Y", "I63M", "L67M"], "vpu": ["Q2N", "Q5E", "L7Y", "A8S", "V14I", "A15V", "I28L", "H74D", "N80H"]}, "labels": {"aa": "INT: M50I, V72I, T125A, G140A, M154I, G163K, I200M, V201I, K211T, I257V; RT-p51: V35I, M41L, E42G, K43N, S162N, D177E, R211K, T215Y, T286A, Q334E, E370D, A371V, K390R; RT-p66: V35I, M41L, E42G, K43N, S162N, D177E, R211K, T215Y, T286A, Q334E, E370D, A371V, K390R, T470P, H483L, K512R, L517I, V531I, A554N, V559I; gp120: T21K, A27T, D34S, V37A, V56I, V57F, N71D, E74D, S116W, -118K, -119M, S136N, Q142K, Y149N, N160S, T161N, V180A, K199N, E247S, N261K, S263A, E265T, -282Q, G284-, G307K, A308G, K309A, K315L, A318V, R322K, F325Y, -326G, V332A, N334T, Q361S, -368N, -370S, -372W, -373N, -374T, -375E, -376G, -377S, N378L, -381T, -382E, T385P, I386F, R412A, S418T, N433S, E436G; gp41: V2A, F8L, L9P, G16R, L24M, L32Q, N42S, V72M, S107T, D109E, D113G, M118L, K122R, D129E, T133S, D163S, I177V, T189S, T208I, L210P, D217E, I222T, R236P, D239N, C253F, S256I, V281I, L304F, V318I, A325I, F326Y, R334V; nef: S8M, S9V, P14A, K39R, I43L, A49P, L58V, T133I, V153I, V182E, D205N; p1: H9S; p17: V7I, K76R, E93D, I104V, S126N; p2: V7M, N9G; p24: L111F, S178T; p6: E29G, P30T, I31-; p7: T12I, P31H, R34K; pro: L19Q, V32I, M36I, M46I, R57T, L63P, A71V, V82A; rev: F21S, P31S, Q36K, W58R, S67P, A68E, Q74H, L83I, N86D, Q95P, S99N; tat: K29R, Q63E, S68P, K71E, P73S, S75P, P77L, T82K, S87P; vif: K33R, F39V, E54K, G60R, R92E, L102T, Y110H, Y111H, I124L, G126E, T151V, I154T; vpr: N28R, R36S, H40Y, I63M, L67M; vpu: Q2N, Q5E, L7Y, A8S, V14I, A15V, I28L, H74D, N80H"}}}]}, {"name": "B_NODE_0000046", "node_attrs": {"div": 0.14734000000000003, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A677G", "T1752C", "G4051A", "-6212A", "-6213T", "-6214A", "A7868G", "G8323T", "C8648T"], "gp120": ["-382N", "-383S"], "gp41": ["T189A", "D239N", "L340F"], "p6": ["S25P"], "tat": ["D61G"]}, "labels": {"aa": "gp120: -382N, -383S; gp41: T189A, D239N, L340F; p6: S25P; tat: D61G"}}, "children": [{"name": "B_NODE_0000047", "node_attrs": {"div": 0.15189000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A619G", "T978A", "A1002G", "G1205A", "G1271T", "A1427G", "G1499A", "C1501T", "C1996T", "G2887A", "A2925G", "C3100T", "T4952A", "T5047C", "T5228C", "A5282T", "A5385C", "A5432G", "T5487C", "T5677A", "A5718G", "G5842A", "T5852A", "A5867C", "A6232G", "T6337C", "G6644A", "A6669G", "-6703A", "A6809G", "T6888C", "-6956G", "-6979A", "-6980G", "-6982G", "-6983T", "-7009A", "C7165T", "A7604G", "T7622A", "A7771C", "T7801A", "A8364C", "T8371-", "G8377A", "C8590G", "T8740C", "A8851T", "T8864G"], "RT-p51": ["K277R"], "RT-p66": ["K277R"], "gp120": ["K5Q", "E122-", "I126M", "V264I", "N272S", "E294R", "M345T", "-377S", "D384-"], "gp41": ["S107T"], "nef": ["S8R", "G12E", "A83G", "Q170L", "D174E"], "p17": ["K95R"], "p24": ["L83M", "E180D"], "p7": ["T12I"], "tat": ["K19R"], "vif": ["N122K", "I154T"], "vpr": ["N28S", "I60L", "S94R"], "vpu": ["I18L", "S24T", "V79I", "L82Q"]}, "labels": {"aa": "RT-p51: K277R; RT-p66: K277R; gp120: K5Q, E122-, I126M, V264I, N272S, E294R, M345T, -377S, D384-; gp41: S107T; nef: S8R, G12E, A83G, Q170L, D174E; p17: K95R; p24: L83M, E180D; p7: T12I; tat: K19R; vif: N122K, I154T; vpr: N28S, I60L, S94R; vpu: I18L, S24T, V79I, L82Q"}}, "children": [{"name": "KT124745", "node_attrs": {"div": 0.19865000000000002, "accession": "KT124745", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 1997.0}, "Strain_name": {"value": "1053_06"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A371T", "A374G", "A417C", "T476C", "T495G", "G498C", "C590T", "G614T", "A643G", "A666T", "G709A", "C749G", "G810A", "A866T", "A891T", "G944A", "G956A", "T992G", "A1017C", "C1040T", "G1078C", "A1088C", "A1089C", "C1118T", "C1137T", "A1173G", "C1174T", "C1220T", "A1292G", "G1313A", "G1404A", "T1409C", "G1419A", "T1444C", "A1449C", "T1451G", "C1460A", "A1473C", 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"K219N", "N222K"], "RT-p51": ["P4H", "E6D", "K49R", "V106I", "I135V", "S162C", "I178V", "Q334R", "G335D", "G359S", "V435I"], "RT-p66": ["P4H", "E6D", "K49R", "V106I", "I135V", "S162C", "I178V", "Q334R", "G335D", "G359S", "V435I", "R461K", "V467I", "A554T"], "gp120": ["T3A", "L6W", "A20E", "-107K", "-109T", "N111S", "T112N", "S114-", "S115-", "S116-", "G117-", "G124A", "I133V", "S136N", "V141M", "F148L", "V153I", "N158P", "D159E", "N160Q", "K203N", "R224K", "N251D", "A253I", "I256M", "S263T", "R276S", "H280P", "A291T", "G293D", "N312T", "A318V", "K319A", "-326P", "Q335S", "-368A", "N369W", "-370N", "T371N", "-374T", "-375E", "-376E", "-381E", "N382G", "-384T", "P389Q", "I396V", "R416K", "S418L", "I421V", "N433-", "E436D", "D446N", "M447I", "R448K", "V461I", "E464K", "V468I"], "gp41": ["I4T", "A96T", "T101V", "D113N", "K122R", "D129E", "L130V", "E136Q", "E137N", "A156N", "D163N", "N166Q", "M176I", "S192A", "E223A", "E228D", "R231S", "D232A", "G235T", "N239H", "F241L", "A243E", "V247D", "I270V", "L273T", "W286G", "V318I", "L322I", "A325F"], "nef": ["-10K", "-11A", "E18D", "R21K", "R22Q", "K39R", "H40Y", "A49N", "A50-", "N51-", "A56T", "L76V", "V85L", "K92R", "I101V", "Y102W", "H116N", "Y120H", "E149D", "E151D", "N162S", "S163K", "M168V", "R178K", "L198K"], "p17": ["E12D", "K28Q", "R30K", "S54A", "E55Q", "E93D", "K103R", "S111C", "S125N"], "p2": ["V7A", "N9Q"], "p24": ["V27I", "E45D", "T54S", "H87Q", "I91V", "M96L", "G116A", "N120H", "T148V", "G225S", "V230I"], "p6": ["E12A", "A22I", "K27R", "L35M", "L38I", "A39T"], "p7": ["R26K"], "pro": ["L19I", "R41K", "L63P", "I64L", "H69Y"], "rev": ["R4G", "S5N", "L13I", "K14T", "K20R", "F21R", "E47Q", "R53H", "S54E", "E57T", "I59L", "L60I", "S61R", "Y63H", "D88S", "T91D", "T94A", "I102V", "V104G", "S106P", "P107A", "S112P", "T114A"], "tat": ["T23N", "I39T", "T40Q", "S46F", "K50R", "P59Y", "Q60Y", "G61N", "Q63E", "V67T"], "vif": ["K22N", "I31R", "F39I", "H48N", "I51T", "D61N", "A62P", "I66V", "D78E", "K91E", "R92K", "N101G", "Q105R", "E134D", "T151V", "I159R", "K176E", "N190S"], "vpr": ["Q3R", "I37M", "G41S", "H45Y", "I63M", "Q86R", "R87S"], "vpu": ["S3A", "Q5L", "I6L", "A8-", "F27L", "R37K", "I43N", "D44-", "R47A", "V65M"]}, "labels": {"aa": "INT: S39N, T112V, I113V, I161L, V165I, K219N, N222K; RT-p51: P4H, E6D, K49R, V106I, I135V, S162C, I178V, Q334R, G335D, G359S, V435I; RT-p66: P4H, E6D, K49R, V106I, I135V, S162C, I178V, Q334R, G335D, G359S, V435I, R461K, V467I, A554T; gp120: T3A, L6W, A20E, -107K, -109T, N111S, T112N, S114-, S115-, S116-, G117-, G124A, I133V, S136N, V141M, F148L, V153I, N158P, D159E, N160Q, K203N, R224K, N251D, A253I, I256M, S263T, R276S, H280P, A291T, G293D, N312T, A318V, K319A, -326P, Q335S, -368A, N369W, -370N, T371N, -374T, -375E, -376E, -381E, N382G, -384T, P389Q, I396V, R416K, S418L, I421V, N433-, E436D, D446N, M447I, R448K, V461I, E464K, V468I; gp41: I4T, A96T, T101V, D113N, K122R, D129E, L130V, E136Q, E137N, A156N, D163N, N166Q, M176I, S192A, E223A, E228D, R231S, D232A, G235T, N239H, F241L, A243E, V247D, I270V, L273T, W286G, V318I, L322I, A325F; nef: -10K, -11A, E18D, R21K, R22Q, K39R, H40Y, A49N, A50-, N51-, A56T, L76V, V85L, K92R, I101V, Y102W, H116N, Y120H, E149D, E151D, N162S, S163K, M168V, R178K, L198K; p17: E12D, K28Q, R30K, S54A, E55Q, E93D, K103R, S111C, S125N; p2: V7A, N9Q; p24: V27I, E45D, T54S, H87Q, I91V, M96L, G116A, N120H, T148V, G225S, V230I; p6: E12A, A22I, K27R, L35M, L38I, A39T; p7: R26K; pro: L19I, R41K, L63P, I64L, H69Y; rev: R4G, S5N, L13I, K14T, K20R, F21R, E47Q, R53H, S54E, E57T, I59L, L60I, S61R, Y63H, D88S, T91D, T94A, I102V, V104G, S106P, P107A, S112P, T114A; tat: T23N, I39T, T40Q, S46F, K50R, P59Y, Q60Y, G61N, Q63E, V67T; vif: K22N, I31R, F39I, H48N, I51T, D61N, A62P, I66V, D78E, K91E, R92K, N101G, Q105R, E134D, T151V, I159R, K176E, N190S; vpr: Q3R, I37M, G41S, H45Y, I63M, Q86R, R87S; vpu: S3A, Q5L, I6L, A8-, F27L, R37K, I43N, D44-, R47A, V65M"}}}, {"name": "MG171201", "node_attrs": {"div": 0.18410000000000004, "accession": "MG171201", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2013.0}, "Strain_name": {"value": "S1492_T1_Intact"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A213G", "-305T", "G369C", "G379A", "A389G", "G401A", "G407A", "A418C", "A424G", "A435T", "G520A", "C525T", "T534G", "C540A", "A548C", "T570C", "A576T", "C577T", "A620G", "C623T", "G629A", "G641A", "C747A", "A759C", "T760C", "A774C", "T794C", "A833C", "T1003C", "A1090G", "A1097G", "C1136T", "C1137A", "C1169T", "C1182T", "G1192A", "G1328A", "G1346A", "T1385C", "C1406T", "G1443A", "A1461G", "G1474A", "C1535T", "A1543G", "G1640A", "A1736G", "A1743G", "A1762C", "C1767A", "G1778A", "T1783C", "A1926G", "T1957C", "C1986T", "G2027A", "T2104C", "A2254G", "T2323C", "G2343A", "A2459G", "G2462A", "C2596T", "T2672C", "A2755G", "C2831T", "A2842G", "T2905C", "A2918C", "G2926A", "A2972G", "G2984A", "A2985C", "A2989G", "A3010G", "A3080G", "T3165C", "G3205T", "G3211A", "A3224G", "A3241T", "G3307T", "C3394T", "G3473A", "T3550G", "T3559C", "G3562A", "C3589T", "A3651G", "G3814A", "C3857T", "G3859A", "T3865G", "C3889T", "A3979G", "A4025G", "A4076C", "T4117C", "T4153C", "C4159T", "G4237A", "A4303G", "A4315G", "A4338G", "A4407G", "A4474C", "A4525C", "T4655C", "A4785G", "A4811G", "G4887A", "T4910C", "T4969G", "A4993T", "G5037A", "G5093A", "A5134G", "G5199A", "A5213C", "T5214C", "A5278G", "A5335C", "T5353A", "T5354C", "C5359G", "T5391C", "G5433A", "T5457C", "G5548T", "A5558G", "C5620G", "T5626A", "G5644T", "G5653A", "C5654T", "A5659T", "G5668A", "A5712G", "G5775A", "T5788A", "A5790T", "T5799-", "T5801-", "G5802-", "G5803-", "A5804-", "G5808-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819G", "-5820G", "-5821G", "-5822G", "-5823G", "A5828T", "A5845G", "G5853A", "G5861A", "T5870A", "A6001C", "A6044C", "T6064C", "A6158G", "T6160C", "T6171C", "-6172G", "-6175T", "A6176G", "A6177T", "-6180C", "C6189A", "-6203G", "-6204G", "-6205G", "-6206G", "-6207G", "A6209G", "-6210C", "A6219G", "G6225A", "C6253T", "A6292G", "G6329A", "G6346A", "G6430A", "C6457A", "G6494A", "C6559T", "G6581A", "T6599A", "C6618T", "G6647C", "C6660T", "A6661C", "C6670T", "A6682G", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "C6692G", "A6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "G6732A", "A6735G", "G6774A", "C6777G", "A6826C", "-6830A", "-6831A", "-6832G", "-6836G", "-6837C", "-6838A", "A6840C", "C6862T", "T6863A", "A6929T", "C6935A", "-6957T", "-6968C", "-6969G", "-6970G", "-6971A", "-6972G", "-6973T", "-6975G", "-6977A", "-6978C", "-6981G", "T7003C", "-7004T", "-7005C", "-7006A", "A7037G", "A7056C", "A7090C", "C7127A", "A7148G", "A7154G", "A7155C", "A7158G", "G7160A", "A7161C", "G7162T", "C7171T", "A7189G", "G7232A", "A7322G", "C7373A", "C7393T", "A7533G", "G7552A", "G7594A", "G7628A", "A7629G", "G7633A", "G7668A", "T7681C", "G7688A", "A7700T", "G7726A", "G7735A", "G7759A", "C7770G", "A7929G", "C7941A", "A8006G", "T8020C", "G8042A", "C8048T", "G8050A", "C8065A", "C8071T", "C8077T", "G8079A", "T8112G", "G8144C", "T8197G", "T8218C", "T8265C", "A8266G", "T8267C", "G8280A", "C8286T", "C8293T", "A8327G", "G8342A", "G8372-", "G8373A", "G8385A", "G8388A", "G8393A", "T8426G", "A8438G", "C8440T", "T8444G", "C8471T", "-8487G", "C8500A", "C8503A", "A8533G", "G8537A", "G8554A", "T8582C", "C8652A", "A8655C", "C8684G", "A8746T", "A8796G", "G8805A", "C8868G", "G8886A", "G8888A", "C8900T", "C8904A", "G8922A", "T8923A", "A8947T", "T8966G", "G8970A", "C8992T", "T9075C"], "INT": ["I84V", "I101L", "M154I", "K188R", "K211R"], "RT-p51": ["R83K", "K122E", "E123N", "K275Q", "I293V", "E297T", "I329V", "M357T", "E370D", "T377A", "T400A", "E404D"], "RT-p66": ["R83K", "K122E", "E123N", "K275Q", "I293V", "E297T", "I329V", "M357T", "E370D", "T377A", "T400A", "E404D", "D460N", "N519S"], "gp120": ["L6M", "N64H", "N102D", "V106A", "-109V", "N111A", "-118G", "-119A", "-120I", "-121G", "G124E", "D159N", "N160E", "N201K", "K212T", "V214I", "V243I", "F249I", "T255I", "E265Q", "T269I", "S278G", "G293E", "G307E", "A308G", "K319E", "Q324H", "-326K", "-328A", "K329T", "S337T", "T359S", "Q361K", "-368S", "-370S", "-376G", "-381G", "I395V", "E401A", "R412S", "L425I", "N432D", "N434A", "N435S", "E436T", "V460I"], "gp41": ["M7V", "L24M", "K77R", "T101A", "D109S", "D129S", "T133S", "A156G", "N166K", "H209R", "P213Q", "V247I", "R259H", "I270S", "V281L", "N298K", "V321A", "F326Y", "A328V", "R334T", "R342G"], "nef": ["-11I", "A15T", "V16I", "D28E", "A33V", "A53D", "A54D", "R71K", "Q104K", "K105Q", "Y135F", "K152E", "E155K", "P176A", "V182I", "R188S", "V194K", "Y202F"], "p17": ["E12Q", "R15K", "K28T", "I34L", "G62E", "S67A", "Q69K", "Y79H", "T81L"], "p2": ["V7I", "I13V"], "p24": ["L6I", "M10P", "I15L", "I91A", "N120S", "L136M", "R154K"], "p6": ["Q28P", "P30T", "L35P"], "p7": ["R3K"], "pro": ["K43R", "V77I"], "rev": ["E11D", "T15A", "W58R", "G65D", "S67L", "A68T", "L73I", "P77S", "D88E", "S99T", "*117E"], "tat": ["A58S", "T74A"], "vif": ["K33R", "T67A", "I128R", "Q136L", "H183R"], "vpr": ["R32K", "I37P", "Q77P", "I83N", "P85R", "S96P"], "vpu": ["Q5E", "L7I", "V13L", "A16I", "V21I", "L61I", "M67R", "H74L", "N80D"]}, "labels": {"aa": "INT: I84V, I101L, M154I, K188R, K211R; RT-p51: R83K, K122E, E123N, K275Q, I293V, E297T, I329V, M357T, E370D, T377A, T400A, E404D; RT-p66: R83K, K122E, E123N, K275Q, I293V, E297T, I329V, M357T, E370D, T377A, T400A, E404D, D460N, N519S; gp120: L6M, N64H, N102D, V106A, -109V, N111A, -118G, -119A, -120I, -121G, G124E, D159N, N160E, N201K, K212T, V214I, V243I, F249I, T255I, E265Q, T269I, S278G, G293E, G307E, A308G, K319E, Q324H, -326K, -328A, K329T, S337T, T359S, Q361K, -368S, -370S, -376G, -381G, I395V, E401A, R412S, L425I, N432D, N434A, N435S, E436T, V460I; gp41: M7V, L24M, K77R, T101A, D109S, D129S, T133S, A156G, N166K, H209R, P213Q, V247I, R259H, I270S, V281L, N298K, V321A, F326Y, A328V, R334T, R342G; nef: -11I, A15T, V16I, D28E, A33V, A53D, A54D, R71K, Q104K, K105Q, Y135F, K152E, E155K, P176A, V182I, R188S, V194K, Y202F; p17: E12Q, R15K, K28T, I34L, G62E, S67A, Q69K, Y79H, T81L; p2: V7I, I13V; p24: L6I, M10P, I15L, I91A, N120S, L136M, R154K; p6: Q28P, P30T, L35P; p7: R3K; pro: K43R, V77I; rev: E11D, T15A, W58R, G65D, S67L, A68T, L73I, P77S, D88E, S99T, *117E; tat: A58S, T74A; vif: K33R, T67A, I128R, Q136L, H183R; vpr: R32K, I37P, Q77P, I83N, P85R, S96P; vpu: Q5E, L7I, V13L, A16I, V21I, L61I, M67R, H74L, N80D"}}}]}, {"name": "B_NODE_0000048", "node_attrs": {"div": 0.15374000000000002, "clade_membership": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A585G", "C586T", "G810A", "A1173G", "C1174T", "T1452C", "G1562A", "A1743G", "C1986T", "T2365C", "A2972G", "G3085A", "A3145G", "C3225T", "A3264G", "G3796A", "T3850C", "A3868G", "G4150A", "G4376A", "G4735A", "G5187A", "A5335G", "C5447A", "A5558G", "A5613C", "-5800G", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5826C", "C5916A", "A6065G", "-6175T", "-6204G", "-6216A", "-6217A", "A6221G", "T6287C", "G6391A", "G6578A", "A6602T", "T6641G", "G6647A", "A6684G", "C6777A", "A6779G", "G6963A", "-6997A", "A7007-", "C7008-", "A7090T", "G7441A", "C7701A", "G7720A", "G8001C", "T8008A", "A8011C", "C8047T", "A8105G", "G8245A", "G8264A", "T8646C", "C8687T", "T8747C", "A8750C", "G8789T", "G8870A", "G8886A", "A8950T", "G8955A"], "INT": ["V201I"], "RT-p51": ["I293V", "K390R"], "RT-p66": ["I293V", "K390R"], "gp120": ["T3A", "N71D", "N113T", "K123E", "Y145H", "V242I", "T250S", "N261K", "S263A", "E265K", "K277R", "A308E", "K309E", "T371-", "R412S"], "gp41": ["M7L", "T133N", "R233T", "T268A"], "nef": ["Y102H", "E149D", "V182M", "Y203F", "D205N"], "p17": ["R30K", "T84V"], "p2": ["S10P"], "p24": ["V27I", "T148V"], "p7": ["R26K"], "rev": ["T15A", "Q51H", "S54T", "I55L", "N86S"], "vif": ["R50K"], "vpr": ["Q77R"], "vpu": ["-69V", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: V201I; RT-p51: I293V, K390R; RT-p66: I293V, K390R; gp120: T3A, N71D, N113T, K123E, Y145H, V242I, T250S, N261K, S263A, E265K, K277R, A308E, K309E, T371-, R412S; gp41: M7L, T133N, R233T, T268A; nef: Y102H, E149D, V182M, Y203F, D205N; p17: R30K, T84V; p2: S10P; p24: V27I, T148V; p7: R26K; rev: T15A, Q51H, S54T, I55L, N86S; vif: R50K; vpr: Q77R; vpu: -69V, -70E, -71M, -72G"}}, "children": [{"name": "FJ469691", "node_attrs": {"div": 0.18844000000000002, "accession": "FJ469691", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2006.0}, "Strain_name": {"value": "CR0047U"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A314T", "A370C", "G508A", "C516A", "G518A", "G519A", "A530G", "A557G", "G579A", "G608A", "G615A", "A666T", "G683A", "C707T", "C747A", "C749G", "G770A", "G813A", "A815G", "G837A", "C897T", "A968T", "T978G", "T983C", "A986G", "G1016A", "T1055C", "G1184A", "A1247T", "A1307G", "G1313A", "C1354G", "C1362T", "T1421C", "A1442G", "G1443A", "A1446G", "A1450C", "G1455C", "A1458G", "G1472A", "G1486A", "A1500G", "C1501T", "T1511C", "A1545C", "C1656T", "A1657C", "A1691G", "A1701T", "A1770G", "A1852G", "C1987T", "A1988G", "A1993C", "G2027A", "T2158C", "G2180A", "G2201A", "T2237A", "G2456C", "A2459G", "C2467T", "A2524G", "A2545G", "C2615G", "T2653C", "T2657C", "A2738T", "C2739A", "G2902A", "T2905C", "A2980C", "G3004A", "A3010G", "A3097C", "G3099A", "G3162A", "A3164G", "A3224C", "A3277G", "G3307T", "G3385A", "T3399C", "G3473A", "G3477A", "G3494A", "T3505G", "G3643C", "G3737A", "G3766A", "T3779C", "C3799T", "T3909A", "T3977C", "C4043T", "A4063G", "A4076C", "G4174A", "A4264G", "A4432C", "T4441A", "G4464A", "A4658G", "A4683G", "A4693G", "G4694A", "G4695A", "G4696A", "C4715T", "T4738C", "T4772G", "A4773G", "A4782G", "C4803A", "G4861A", "G4862T", "C4871A", "A4950C", "T4952G", "A4956T", "A4966G", "T4973C", "G4982T", "A4994C", "A5005G", "A5021G", "G5037A", "C5050A", "G5212A", "A5215G", "T5263C", "T5442C", "C5444A", "A5446C", "T5448A", "A5462G", "T5492C", "C5495A", "T5576C", "T5577G", "C5602A", "C5611T", "C5688T", "G5725A", "G5729A", "G5747T", "A5760G", "A5781C", "A5787G", "A5790G", "-5805G", "-5806A", "-5807G", "-5809G", "-5810G", "-5817A", "A5869T", "G5893A", "C5958A", "A5965G", "T5968C", "G6029A", "-6172C", "A6174C", "A6177G", "G6179-", "T6181-", "G6198A", "C6202T", "-6203A", "-6205T", "-6206A", "-6207G", "A6208C", "A6209G", "-6210A", "-6215G", "G6218A", "A6219T", "A6263C", "T6289G", "C6305T", "T6306A", "G6314A", "G6329A", "A6332G", "A6333G", "T6337C", "A6350C", "G6392A", "C6457T", "G6458A", "A6465C", "C6483T", "A6520G", "C6545T", "A6584C", "A6614G", "A6616C", "C6618T", "C6632T", "T6637G", "A6653G", "C6660T", "C6692A", "-6697G", "G6712A", "A6734G", "T6745C", "A6797G", "A6798T", "A6809G", "G6821C", "A6822T", "-6830C", "-6831C", "-6832G", "T6849C", "C6850T", "A6859C", "G6894T", "-6956A", "-6957C", "A6974-", "T6976-", "-6983A", "C6993T", "-6995T", "-6996C", "A7001T", "G7054A", "T7099C", "A7102G", "G7126A", "A7152G", "C7153T", "G7160A", "A7161C", "A7169G", "C7170T", "C7171T", "G7181A", "G7182T", "G7190A", "A7269C", "G7291A", "A7322T", "C7373T", "A7396G", "T7433C", "G7459A", "G7501A", "G7589A", "C7625G", "G7631T", "G7633C", "G7640A", "G7658C", "G7668A", "C7678G", "A7714C", "G7726A", "A7743T", "G7753A", "G7754C", "G7759A", "G7773A", "A7799C", "T7801G", "G7846A", "C7906T", "A7915G", "G7918A", "G7937A", "G8010C", "T8016C", "G8017A", "A8018C", "C8026A", "A8029G", "G8030A", "T8103C", "G8144C", "G8158T", "A8163G", "C8232T", "A8266G", "G8276A", "C8277T", "G8280T", "C8291A", "-8370G", "G8372A", "C8382T", "G8388A", "C8440T", "-8487C", "T8511A", "G8512T", "A8516T", "T8567C", "C8601A", "A8660G", "T8666G", "G8682A", "A8701T", "A8739G", "G8795C", "A8812C", "A8819G", "A8829T", "A8844C", "G8848A", "G8945T", "C8967G", "T8973A", "G8991A", "T8993C", "T9029C", "G9049A", "T9051A", "G9095T", "G9132A"], "INT": ["L45Q", "P90S", "I101L", "K219N", "N222K", "S230N"], "RT-p51": ["E29K", "E36K", "S48T", "D121H", "K122E", "E123D", "Q174E", "Y188H", "T215Y", "Q334H", "G335D", "R356K", "M357V", "T377L", "T400A", "E404D", "V435A"], "RT-p66": ["E29K", "E36K", "S48T", "D121H", "K122E", "E123D", "Q174E", "Y188H", "T215Y", "Q334H", "G335D", "R356K", "M357V", "T377L", "T400A", "E404D", "V435A", "D460N", "R461K", "V467I", "E516D", "V548I"], "gp120": ["K5N", "T21N", "T35K", "E59K", "-107T", "N108S", "S115N", "G117S", "-118S", "-119E", "-120I", "-121E", "E122M", "I137L", "H145Q", "L151Y", "V154I", "D159N", "N160G", "I166L", "V180I", "D202N", "K204T", "P210L", "K212T", "I244L", "K254D", "T255I", "N267D", "T269I", "H280N", "I281M", "K315V", "K319E", "E323L", "-326P", "V332A", "Q335H", "S347I", "-368T", "N369G", "-381T", "D384G", "T385Y", "N433S", "E436T", "T437N", "T439V", "G443I", "D446N", "K472T"], "gp41": ["A96T", "L108V", "E110Y", "D113N", "E119Q", "D125E", "D129G", "E137D", "Q147L", "E151Q", "S157N", "N166Q", "A212T", "G235R", "R236P", "V238A", "N239H", "F241L", "A243T", "V267A", "V281L", "W285C", "N287S", "A310V", "V321M", "A325I", "L330I", "R334T"], "nef": ["-10V", "-11V", "P14S", "V16I", "A33V", "A49P", "W57M", "L87I", "D108E", "V114I", "Y120F", "T133V", "E151D", "N157T", "S163C", "M168L", "S169N", "E201D"], "p1": ["H9S"], "p17": ["E12A", "R58K", "L61I", "G62R", "V82I", "V94I", "S111C"], "p2": ["V7I", "T8A", "N9T", "A11P", "T12A"], "p24": ["L6M", "E28K", "V36I", "E79D", "L83V", "A208G"], "p6": ["T8S", "I31P"], "p7": ["R7K", "T12V", "N27H"], "pro": ["I64V", "E65D", "V77I"], "rev": ["F21R", "S30N", "R53Q", "E57T", "L60I", "S61D", "S99T", "V104L"], "tat": ["T23N", "T24Q", "K29R", "I39T", "T40K", "V67A"], "vif": ["K33G", "K36R", "G37K", "I51T", "K63E", "I66V", "H73N", "R92N", "S95R", "N101D", "N122Q", "I124L", "H127R", "R132S", "Q136H", "N140S", "T155K"], "vpr": ["I37M"], "vpu": ["Q2Y", "D40N", "R41K", "R47I", "E58D", "M67R"]}, "labels": {"aa": "INT: L45Q, P90S, I101L, K219N, N222K, S230N; RT-p51: E29K, E36K, S48T, D121H, K122E, E123D, Q174E, Y188H, T215Y, Q334H, G335D, R356K, M357V, T377L, T400A, E404D, V435A; RT-p66: E29K, E36K, S48T, D121H, K122E, E123D, Q174E, Y188H, T215Y, Q334H, G335D, R356K, M357V, T377L, T400A, E404D, V435A, D460N, R461K, V467I, E516D, V548I; gp120: K5N, T21N, T35K, E59K, -107T, N108S, S115N, G117S, -118S, -119E, -120I, -121E, E122M, I137L, H145Q, L151Y, V154I, D159N, N160G, I166L, V180I, D202N, K204T, P210L, K212T, I244L, K254D, T255I, N267D, T269I, H280N, I281M, K315V, K319E, E323L, -326P, V332A, Q335H, S347I, -368T, N369G, -381T, D384G, T385Y, N433S, E436T, T437N, T439V, G443I, D446N, K472T; gp41: A96T, L108V, E110Y, D113N, E119Q, D125E, D129G, E137D, Q147L, E151Q, S157N, N166Q, A212T, G235R, R236P, V238A, N239H, F241L, A243T, V267A, V281L, W285C, N287S, A310V, V321M, A325I, L330I, R334T; nef: -10V, -11V, P14S, V16I, A33V, A49P, W57M, L87I, D108E, V114I, Y120F, T133V, E151D, N157T, S163C, M168L, S169N, E201D; p1: H9S; p17: E12A, R58K, L61I, G62R, V82I, V94I, S111C; p2: V7I, T8A, N9T, A11P, T12A; p24: L6M, E28K, V36I, E79D, L83V, A208G; p6: T8S, I31P; p7: R7K, T12V, N27H; pro: I64V, E65D, V77I; rev: F21R, S30N, R53Q, E57T, L60I, S61D, S99T, V104L; tat: T23N, T24Q, K29R, I39T, T40K, V67A; vif: K33G, K36R, G37K, I51T, K63E, I66V, H73N, R92N, S95R, N101D, N122Q, I124L, H127R, R132S, Q136H, N140S, T155K; vpr: I37M; vpu: Q2Y, D40N, R41K, R47I, E58D, M67R"}}}, {"name": "JF320263", "node_attrs": {"div": 0.19997, "accession": "JF320263", "clade_membership": {"value": "B"}, "country": {"value": "US"}, "date": {"value": 2006.0}, "Strain_name": {"value": "502_0839_wg01"}, "LANL_subtype": {"value": "B"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "G407A", "A418G", "T422C", "A425G", "C456T", "T473C", "A533G", "A571T", "C590A", "A607G", "G641T", "G667T", "A676G", "C679T", "G712A", "C714A", "A715G", "G716C", "C749A", "A774C", "C827T", "C893T", "C902T", "A1089C", "A1142G", "T1143C", "G1160A", "G1271A", "C1316T", "C1459A", "G1499A", "G1567A", "G1604A", "A1642G", "G1643A", "C1656A", "A1664G", "T1730C", "A1736G", "A1819G", "A1903C", "G1920A", "C1996T", "T2080G", "T2087C", "A2182G", "A2212G", "G2224A", "A2272T", "C2281T", "G2341A", "C2386T", "A2410G", "A2416G", "C2420T", "T2440C", "T2449A", "C2464A", "C2488T", "A2557G", "C2575T", "A2579T", "T2581C", "C2584T", "G2602A", "C2626A", "G2725A", "G2727A", "G2728A", "T2788G", "G2821A", "G2833A", "A2839C", "C2857T", "G2887A", "T2905A", "A2925G", "A2932G", "T2935C", "A2951G", "A2959G", "C3013T", "A3019G", "G3046A", "A3070G", "A3080T", "G3093A", "T3132A", "A3196G", "A3226G", "C3232T", "T3253C", "G3293A", "C3319T", "G3334A", "G3364A", "T3368C", "G3383A", "G3398A", "A3403G", "T3450C", "G3490A", "A3502G", "G3529A", "G3562A", "T3628C", "C3649T", "A3655G", "G3664A", "G3694A", "C3712T", "T3730C", "A3787C", "A3805G", "T3826C", "A3952G", "T4006C", "G4057A", "A4102G", "C4110T", "A4145G", "T4147A", "A4178G", "G4183A", "A4228G", "A4273G", "A4391T", "T4498C", "A4525T", "C4576A", "T4656C", "A4661G", "T4678G", "G4684A", "T4703C", "C4761T", "C4771A", "A4774G", "T4805C", "T4826C", "T4827C", "A4874C", "G4887A", "T4925C", "A4949G", "T4969G", "C5034T", "A5045G", "T5062G", "G5075A", "T5084C", "G5085A", "A5090G", "G5093A", "T5102C", "A5159G", "T5206C", "T5239C", "G5267A", "A5278G", "T5293A", "G5363A", "G5396A", "T5471A", "T5487C", "A5496G", "A5556G", "C5563G", "T5576G", "T5577A", "T5578G", "C5579A", "A5594G", "C5602T", "C5611A", "C5620T", "A5622C", "G5629T", "A5659C", "T5677A", "T5686C", "G5711A", "A5720G", "G5730A", "T5739G", "A5742G", "A5784G", "A5787T", "T5788-", "T5789-", "A5790-", "T5791-", "C5792-", "A5793-", "G5794-", "C5795-", "A5796-", "T5798A", "T5799G", "T5801A", "-5805A", "-5806T", "-5807T", "G5808A", "-5809C", "-5810T", "-5817G", "C5827G", "G5839A", "A5869G", "C5878A", "T5887C", "C5917A", "A5983G", "C5998T", "G6020A", "T6024A", "A6025C", "A6030T", "C6052T", "A6053G", "C6097T", "C6110G", "A6124C", "T6134C", "T6151C", "A6159C", "G6167A", "T6169C", "-6172G", "-6180A", "A6185C", "T6187G", "A6188T", "-6203G", "-6205G", "A6208-", "A6209-", "G6211-", "A6212G", "A6214C", "-6215A", "C6241T", "A6251G", "A6260G", "G6261T", "C6262G", "T6264G", "G6274A", "G6275A", "G6277A", "C6278A", "A6303G", "A6304C", "T6325C", "A6326G", "A6327G", "T6328C", "T6334C", "C6336A", "G6345T", "G6346A", "G6349A", "T6351G", "C6364A", "G6368A", "T6369C", "A6420T", "G6442A", "T6445C", "C6457A", "A6488G", "T6493C", "A6595G", "T6599A", "C6601T", "G6604A", "T6637A", "A6693C", "-6703A", "A6730G", "C6758T", "T6763C", "A6765C", "T6772A", "G6773A", "G6774A", "G6776A", "C6800G", "C6807T", "-6836A", "-6837A", "-6838T", "A6936C", "-6956T", "-6957T", "T6958A", "A6962G", "-6968T", "-6969T", "-6970G", "-6971A", "-6972A", "-6973T", "-6975A", "-6977G", "-6978A", "-6979T", "C6984-", "A6985-", "A6986-", "A6987-", "T6988-", "A6989-", "A6990-", "C6991-", "-6995G", "-6996A", "G6999A", "C7020A", "A7037T", "G7055A", "C7087T", "G7101A", "A7102C", "C7134T", "A7135G", "A7149T", "A7154C", "T7156G", "A7158G", "C7164G", "A7249T", "C7267T", "G7270A", "G7307-", "T7308-", "G7309-", "G7311C", "A7322C", "T7325G", "A7420G", "G7426A", "C7463A", "A7532C", "G7549A", "G7552A", "C7605G", "A7620G", "T7622A", "C7623G", "G7627A", "G7633T", "G7640C", "T7642G", "G7688A", "C7690T", "T7691G", "C7702A", "G7712C", "G7717A", "A7741G", "T7762C", "T7774C", "A7782G", "G7790A", "A7791G", "A7820T", "T7836G", "C7939T", "C7960A", "A7974G", "A7977G", "A8006G", "A8014G", "T8020C", "T8043A", "G8050A", "G8079A", "A8119G", "G8141A", "A8142C", "T8145C", "G8170A", "G8173A", "A8180G", "A8188G", "G8194A", "C8227A", "G8242A", "G8255A", "T8279G", "A8288G", "C8291T", "C8293A", "A8297G", "C8304G", "T8323C", "A8326G", "G8342A", "G8354A", "T8366A", "A8367G", "-8370T", "T8374G", "T8375G", "T8426G", "C8445A", "A8447G", "C8450T", "G8453A", "C8460T", "A8475-", "G8476-", "T8477-", "-8487G", "G8490T", "A8494C", "T8507C", "A8516G", "A8525G", "G8531A", "G8537A", "T8543C", "G8554A", "C8565T", "G8588A", "C8590G", "G8654A", "A8693G", "T8740C", "A8746T", "T8759C", "G8798A", "A8815C", "G8822A", "C8840T", "A8851T", "G8858A", "C8868T", "A8874G", "C8904A", "T8918C", "G8922A", "T8923G", "G8945A", "C8960A", "T8966C", "C8967A", "A9005G", "T9012C", "T9014C"], "INT": ["T112I", "T124A", "I135V", "T206S"], "RT-p51": ["S162C", "D177E", "R211K", "E248D", "K277R", "T286A", "I329L", "G333E", "F346Y", "T377M", "E430K", "V435I"], "RT-p66": ["S162C", "D177E", "R211K", "E248D", "K277R", "T286A", "I329L", "G333E", "F346Y", "T377M", "E430K", "V435I", "L452S"], "gp120": ["T21K", "V56I", "V57D", "E59V", "M67V", "Q86E", "N102T", "D105N", "-107N", "-109D", "N111Q", "T112S", "-118V", "-119K", "I133V", "S136V", "I137R", "V141I", "Q142K", "K150S", "N158G", "T161N", "R164I", "I166R", "V172T", "Y189F", "N201K", "K212A", "F249I", "H280P", "E294N", "H302Y", "N304T", "S306R", "G307K", "E308K", "Q316E", "A318V", "-328N", "Q361P", "-368N", "N369Y", "-374T", "-375D", "-376P", "-377L", "N379D", "-381L", "S383N", "P389Q", "I395F", "E401K", "R416N", "T427M", "N432I", "N434Q", "N435S", "T437S"], "gp41": ["V2A", "G3-", "F8V", "L54M", "K77Q", "T101S", "K106R", "E110D", "D113Q", "K122R", "D129S", "L130V", "N133K", "E137Q", "N160S", "D163S", "I173L", "V178G", "E224G", "E225G", "V247D", "R259H", "E280T", "V281A", "S293G", "V318I", "V321I", "F326G", "I329V", "I332V"], "nef": ["S8R", "S9G", "-10L", "-11G", "D28E", "H40Y", "S46-", "A50S", "N51T", "R71K", "P75S", "A83G", "Y135F", "E158A", "Q170L", "P176S", "R178G", "R188S", "V194R", "C206*"], "p1": ["K4R", "H9N"], "p17": ["K28R", "Y79F", "K91R", "E102D", "S111I", "K114R", "A115V", "S126N", "Q127S"], "p2": ["T12N"], "p24": ["I15L", "N120H"], "p6": ["N47S"], "p7": ["R34K", "M46I"], "pro": ["E35D", "R41K"], "rev": ["K14R", "F21E", "L22I", "P31S", "S56G", "W58R", "A68T", "T91A", "G98D", "A108T", "V109I", "E111G", "T114A", "E116K"], "tat": ["R7K", "T24N", "F32Y", "Q63E", "V67G", "S68D", "P77L", "P84Q"], "vif": ["I31S", "A62D", "K63R", "I128R", "T151A", "I159R", "A167T"], "vpr": ["T19A", "A55T"], "vpu": ["Q2N", "Q5Y", "A8S", "I18L", "S24T", "F27L", "R35K", "K38R", "D44E", "E60D", "L61Q", "S62E", "A63E", "V65L", "E66-", "M67-", "G68-", "H74D", "D78N"]}, "labels": {"aa": "INT: T112I, T124A, I135V, T206S; RT-p51: S162C, D177E, R211K, E248D, K277R, T286A, I329L, G333E, F346Y, T377M, E430K, V435I; RT-p66: S162C, D177E, R211K, E248D, K277R, T286A, I329L, G333E, F346Y, T377M, E430K, V435I, L452S; gp120: T21K, V56I, V57D, E59V, M67V, Q86E, N102T, D105N, -107N, -109D, N111Q, T112S, -118V, -119K, I133V, S136V, I137R, V141I, Q142K, K150S, N158G, T161N, R164I, I166R, V172T, Y189F, N201K, K212A, F249I, H280P, E294N, H302Y, N304T, S306R, G307K, E308K, Q316E, A318V, -328N, Q361P, -368N, N369Y, -374T, -375D, -376P, -377L, N379D, -381L, S383N, P389Q, I395F, E401K, R416N, T427M, N432I, N434Q, N435S, T437S; gp41: V2A, G3-, F8V, L54M, K77Q, T101S, K106R, E110D, D113Q, K122R, D129S, L130V, N133K, E137Q, N160S, D163S, I173L, V178G, E224G, E225G, V247D, R259H, E280T, V281A, S293G, V318I, V321I, F326G, I329V, I332V; nef: S8R, S9G, -10L, -11G, D28E, H40Y, S46-, A50S, N51T, R71K, P75S, A83G, Y135F, E158A, Q170L, P176S, R178G, R188S, V194R, C206*; p1: K4R, H9N; p17: K28R, Y79F, K91R, E102D, S111I, K114R, A115V, S126N, Q127S; p2: T12N; p24: I15L, N120H; p6: N47S; p7: R34K, M46I; pro: E35D, R41K; rev: K14R, F21E, L22I, P31S, S56G, W58R, A68T, T91A, G98D, A108T, V109I, E111G, T114A, E116K; tat: R7K, T24N, F32Y, Q63E, V67G, S68D, P77L, P84Q; vif: I31S, A62D, K63R, I128R, T151A, I159R, A167T; vpr: T19A, A55T; vpu: Q2N, Q5Y, A8S, I18L, S24T, F27L, R35K, K38R, D44E, E60D, L61Q, S62E, A63E, V65L, E66-, M67-, G68-, H74D, D78N"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000270", "node_attrs": {"div": 0.00525, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G215A", "A227T", "A458G", "C462A", "T476C", "G520A", "A655T", "T668C", "A686G", "G752A", "A1109G", "A1339G", "G1346A", "C1444T", "A1543G", "A1619G", "A1768C", "A1772G", "G1784-", "T1785-", "A1786-", "C2003A", "T2335C", "T2386A", "C2452T", "A2578G", "A2830G", "T2930C", "A3439G", "C3496T", "G3508A", "G3866A", "A4264G", "T4288C", "T4976C", "G5433A", "C5567A", "C5653T", "A5658C", "G5781A", "C5795A", "G5811-", "C5831A", "C5916A", "T5920C", "G5962A", "G6179A", "A6219-", "A6661C", "C6800A", "C6823A", "C6922T", "T7087C", "A7198G", "A7322G", "A7666T", "C7801T", "A8098G", "T8159G", "C8167T", "G8429A", "C8687T", "G8798A", "T8832C", "A8852G", "C8903T", "C9012T"], "INT": ["V31I"], "gp120": ["R150K", "K404Q", "A412Q", "N433-"], "gp41": ["M7V", "L54M", "E121D"], "nef": ["H89F", "K182M"], "p17": ["K58Q", "G62E", "E107I"], "p24": ["K203R"], "p6": ["Q30P"], "p7": ["K26R"], "pro": ["H69K"], "rev": ["N84D", "P107S"], "tat": ["D67N"], "vpu": ["D78-"]}, "labels": {"aa": "INT: V31I; gp120: R150K, K404Q, A412Q, N433-; gp41: M7V, L54M, E121D; nef: H89F, K182M; p17: K58Q, G62E, E107I; p24: K203R; p6: Q30P; p7: K26R; pro: H69K; rev: N84D, P107S; tat: D67N; vpu: D78-"}}, "children": [{"name": "NODE_0000271", "node_attrs": {"div": 0.012029999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-167G", "A265G", "A669C", "C700A", "C722T", "A749C", "A1115C", "G1192A", "C1245T", "-1503G", "G1508A", "T1783C", "T2266C", "G2287A", "A2290G", "G2686A", "T2770C", "A3292G", "G3316A", "A3334G", "C3589T", "G4727T", "C4761T", "G4782A", "A4865G", "A5036G", "C5095T", "C5248T", "G5448T", "C5511T", "G5575A", "A5612-", "C5614-", "C5615-", "C5630G", "T5687A", "G5830A", "C5834T", "C5917A", "A5956G", "A5965G", "A6251G", "G6481A", "C6673T", "-6966C", "G7088A", "A7152G", "G7269A", "A7315G", "C7597T", "G7633A", "A7706C", "G8245A", "G8255A", "G8276A", "C8277T", "A8370-", "C8412G", "C8413A", "T8414G", "T8440C", "-8490G", "C9017T", "C9181T"], "RT-p51": ["V435A"], "RT-p66": ["V435A", "L452M", "H483Y"], "gp120": ["D4E", "T21K", "I133V", "I153V", "-371T"], "gp41": ["Y108Q", "V318I", "A325I"], "nef": ["I20M", "P24E", "V33A"], "p17": ["K112Q", "T122K"], "p24": ["E128D", "R154K"], "p6": ["Y36-"], "tat": ["E2D", "K24N"], "vif": ["T155A", "T170V"], "vpu": ["Q2-", "P3-", "I6-", "F27Y", "D60E", "E62S", "W77-"]}, "labels": {"aa": "RT-p51: V435A; RT-p66: V435A, L452M, H483Y; gp120: D4E, T21K, I133V, I153V, -371T; gp41: Y108Q, V318I, A325I; nef: I20M, P24E, V33A; p17: K112Q, T122K; p24: E128D, R154K; p6: Y36-; tat: E2D, K24N; vif: T155A, T170V; vpu: Q2-, P3-, I6-, F27Y, D60E, E62S, W77-"}}, "children": [{"name": "results/subtype_trees/H.nwk", "node_attrs": {"div": 0.05475, "clade_membership": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["C153T", "-280G", "A301G", "-305A", "A386G", "A425G", "T479C", "A508T", "C540A", "T549A", "A561C", "A576C", "C577T", "T596C", "G608A", "G654A", "G690A", "C698T", "G703A", "C707G", "A708G", "-709A", "-711A", "-713C", "-714A", "C731T", "G740A", "C747G", "T748C", "A785G", "T788C", "G791A", "A810G", "C827T", "T884C", "C890T", "A891G", "C902T", "C947A", "C974T", "T978C", "G1078C", "A1089G", "C1169T", "C1316T", "A1359T", "C1362A", "G1404A", "-1452G", "-1455G", "-1456C", "-1457A", "-1458G", "-1459C", "G1474A", "T1481C", "C1598T", "A1601G", "T1616A", "G1661A", "T1682C", "A1691G", "A1742G", "G1794A", "G1845A", "C1853T", "A1857G", "T1978G", "A1982G", "C1985T", "T1996C", "C2047T", "G2065A", "G2074A", "A2127C", "A2254G", "G2273A", "A2368G", "T2449C", "G2456C", "C2533T", "C2613A", "A2623T", "C2635T", "A2715C", "A2716T", "C2720T", "A2722G", "C2828A", "G2830A", "C2839A", "A2950G", "G2984A", "A3019G", "A3025G", "C3055T", "A3088G", "T3133C", "A3145G", "G3165T", "C3223T", "G3250A", "C3252T", "C3271T", "C3357A", "C3376T", "T3399C", "T3414A", "G3442A", "C3449A", "A3454G", "T3469C", "G3491A", "T3505G", "C3542T", "G3556A", "C3567T", "A3583G", "A3625T", "G3643A", "C3649T", "C3665G", "G3667A", "A3676G", "G3766A", "T3779C", "A3816G", "G3825A", "C3994T", "T4039C", "C4079T", "A4081G", "T4085C", "A4093C", "G4109A", "A4111G", "C4141A", "A4150G", "A4183G", "A4255G", "T4276C", "A4427T", "T4441A", "A4498T", "G4549A", "G4573A", "G4642A", "C4652A", "T4655C", "A4664G", "G4677A", "A4693G", "G4726C", "A4736G", "A4775G", "A4781C", "T4969G", "A5049G", "T5062C", "G5087A", "A5090G", "T5147C", "A5200G", "G5225C", "G5226A", "C5227A", "T5356C", "A5360G", "C5371T", "A5375G", "T5466C", "G5482T", "T5484G", "C5495A", "A5535C", "A5545G", "C5554G", "A5555C", "G5565A", "G5599T", "C5602A", "A5608-", "T5609-", "G5610-", "T5611-", "A5613-", "T5617A", "A5623G", "T5624-", "G5626A", "T5636G", "T5641C", "A5655T", "A5707G", "G5711A", "A5718G", "T5739A", "A5781T", "G5784A", "A5793C", "G5839C", "A5846C", "A5848G", "C5884A", "A5896G", "T5929C", "G5963A", "T5964A", "T6025C", "A6043G", "C6052T", "A6059G", "A6065G", "G6088A", "A6112G", "C6116T", "T6155C", "-6167G", "-6170G", "-6171T", "-6172A", "-6180A", "-6225G", "A6230C", "C6256T", "A6261T", "A6278C", "T6287C", "T6295C", "A6326G", "G6336C", "G6339A", "-6340G", "C6369T", "T6385C", "G6403A", "T6454C", "T6457C", "G6458A", "G6463A", "A6465C", "C6469T", "A6489C", "C6559A", "T6562C", "G6575C", "A6578G", "G6593A", "G6611A", "C6618A", "T6641C", "A6654C", "T6655C", "A6706G", "A6736C", "G6779C", "A6790G", "A6799C", "C6807T", "A6810C", "A6812C", "G6821A", "C6850T", "C6875A", "A6880G", "-6952C", "-6955G", "-6965A", "-6967C", "-6974A", "-6976T", "-6978A", "-6986A", "-6987A", "-6988T", "-6990A", "-6991C", "-6993C", "-6995A", "-6997A", "-7000A", "-7001A", "-7002A", "-7003T", "C7018G", "G7055A", "A7106G", "C7127A", "A7138T", "T7141C", "T7153A", "A7155C", "G7166-", "A7167-", "G7168T", "A7275G", "A7306T", "C7313A", "G7322T", "G7324T", "G7366A", "G7441A", "C7463A", "A7471G", "A7477G", "G7513A", "G7670C", "C7690G", "A7691G", "T7692A", "A7705G", "G7753A", "G7765A", "C7792T", "C7843T", "A7918T", "A7936G", "A7943C", "C7969A", "A7984C", "G8030C", "G8055A", "C8092A", "A8093C", "C8103T", "A8128G", "C8129A", "C8131A", "G8159T", "T8182A", "A8188G", "T8218C", "G8264A", "G8348A", "A8378G", "A8405G", "A8409G", "A8429G", "A8441G", "C8450T", "A8453G", "A8458G", "A8461G", "G8476T", "G8479A", "C8480T", "T8582C", "C8688A", "T8711C", "A8739G", "T8740A", "C8741G", "A8746T", "A8750C", "T8786A", "A8793C", "A8798G", "G8970A", "-8971G", "-8974G", "G8997-", "A9005G", "A9027G", "T9073C", "A9095G"], "INT": ["K14R", "S17N", "N222K"], "RT-p51": ["K11T", "V60I", "D121H", "T173K", "K174Q", "E207A", "Q245K", "D248E", "E297K", "T386I", "P421H", "F440Y"], "RT-p66": ["K11T", "V60I", "D121H", "T173K", "K174Q", "E207A", "Q245K", "D248E", "E297K", "T386I", "P421H", "F440Y", "V466I", "S491L", "Q524E"], "gp120": ["V37K", "K69E", "N71D", "I126L", "K142Q", "Y145H", "N160T", "N161T", "S162-", "T172V", "D202N", "K204T", "K212T", "E241-", "I242V", "E247K", "A253T", "T255N", "S263P", "E309Q", "Q315H", "Q316K", "A318V", "K319T", "K320Q", "L341I", "-370S", "-374T", "-378N", "-379N", "-380T", "I396V", "N418V", "L425I", "N434S", "E438-", "K474R"], "gp41": ["L4M", "V7F", "N42S", "E123Q", "I130E", "I135L", "A243P", "A245V", "F263L", "I264L", "A267V", "V321I"], "nef": ["T23A", "K39R", "H40R", "S45I", "S46N", "H116N", "I133E", "Y135F", "K151Q"], "p17": ["Q58L", "Q69K", "S72T", "T81L", "A119T", "G123E", "N124K", "S125D", "Q127K"], "p2": ["A7V", "-10A", "-12A"], "p24": ["L6A", "I27V", "T54A", "G116A", "S120G", "T210S", "L211I"], "p6": ["I21M", "L35P"], "p7": ["R3K", "Q9P"], "pro": ["G16E", "K20R", "D60E", "I62V", "L63S", "M89I"], "rev": ["K14Q", "R17K", "K30E", "E32A", "S61T", "H82T", "T94E", "Q95K", "S112T", "T114A"], "tat": ["V36L", "T40K", "R57G", "Q60A", "Q76R", "S87*"], "vif": ["R19N", "N22K", "V31I", "K36R", "R47T", "I128R"], "vpr": ["Y15H", "G41Q", "I84T", "A89V"], "vpu": ["L4I", "V7I", "A8G", "V10G", "L16F", "D44E", "E58D", "E63K", "-68G", "-73H", "-74H", "D80A", "N81D"]}, "labels": {"aa": "INT: K14R, S17N, N222K; RT-p51: K11T, V60I, D121H, T173K, K174Q, E207A, Q245K, D248E, E297K, T386I, P421H, F440Y; RT-p66: K11T, V60I, D121H, T173K, K174Q, E207A, Q245K, D248E, E297K, T386I, P421H, F440Y, V466I, S491L, Q524E; gp120: V37K, K69E, N71D, I126L, K142Q, Y145H, N160T, N161T, S162-, T172V, D202N, K204T, K212T, E241-, I242V, E247K, A253T, T255N, S263P, E309Q, Q315H, Q316K, A318V, K319T, K320Q, L341I, -370S, -374T, -378N, -379N, -380T, I396V, N418V, L425I, N434S, E438-, K474R; gp41: L4M, V7F, N42S, E123Q, I130E, I135L, A243P, A245V, F263L, I264L, A267V, V321I; nef: T23A, K39R, H40R, S45I, S46N, H116N, I133E, Y135F, K151Q; p17: Q58L, Q69K, S72T, T81L, A119T, G123E, N124K, S125D, Q127K; p2: A7V, -10A, -12A; p24: L6A, I27V, T54A, G116A, S120G, T210S, L211I; p6: I21M, L35P; p7: R3K, Q9P; pro: G16E, K20R, D60E, I62V, L63S, M89I; rev: K14Q, R17K, K30E, E32A, S61T, H82T, T94E, Q95K, S112T, T114A; tat: V36L, T40K, R57G, Q60A, Q76R, S87*; vif: R19N, N22K, V31I, K36R, R47T, I128R; vpr: Y15H, G41Q, I84T, A89V; vpu: L4I, V7I, A8G, V10G, L16F, D44E, E58D, E63K, -68G, -73H, -74H, D80A, N81D", "clade": "H"}}, "children": [{"name": "H_NODE_0000001", "node_attrs": {"div": 0.06239, "clade_membership": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["G717A", "A1263T", "G1290A", "T1501C", "A1777G", "G1912A", "G1978A", "A2230G", "T2269C", "G2602A", "T2737C", "G3085A", "A3217G", "A3218G", "G3292A", "C3712T", "A3795G", "A3886G", "C4210T", "C4471T", "T4674C", "A4717T", "G4723C", "A5057G", "T5095C", "G5167A", "C5333T", "A5431G", "G5437C", "C5445T", "A5557G", "C5584T", "A5644G", "C5658T", "A5659T", "G5668A", "G5717A", "-5791T", "G5794A", "-5799T", "-5806A", "-5809G", "-5810G", "-5811G", "T5828A", "A5830G", "G6023C", "-6173A", "-6175T", "G6277A", "A6304G", "T6395A", "A6403C", "C6487T", "G6526A", "C6660T", "A6668G", "A6669G", "-6689A", "A6703-", "G6732A", "C6777A", "A6788G", "G6905A", "-6972G", "-6977A", "-6981G", "-6982G", "-6983A", "-7004G", "-7005G", "C7012T", "G7146T", "G7701A", "G7712A", "G7717A", "G7790A", "A7791G", "T7921C", "A8172T", "C8294A", "A8469C", "T8813C", "G8846A"], "INT": ["K7R", "V112M"], "RT-p51": ["I375V"], "RT-p66": ["I375V", "Q480H"], "gp120": ["E183D", "N272G", "K312E", "G351R", "-383N", "G431V", "S434T"], "gp41": ["E137K", "D163S", "D230G", "Q290L", "H331N"], "nef": ["I43L"], "p17": ["K76Q", "V128I"], "p24": ["T178S", "D187N"], "p6": ["K33R"], "p7": ["I12T"], "tat": ["A21P", "S61G", "P70S"], "vif": ["Y30H", "Y44F"]}, "labels": {"aa": "INT: K7R, V112M; RT-p51: I375V; RT-p66: I375V, Q480H; gp120: E183D, N272G, K312E, G351R, -383N, G431V, S434T; gp41: E137K, D163S, D230G, Q290L, H331N; nef: I43L; p17: K76Q, V128I; p24: T178S, D187N; p6: K33R; p7: I12T; tat: A21P, S61G, P70S; vif: Y30H, Y44F"}}, "children": [{"name": "KU168273", "node_attrs": {"div": 0.12243000000000001, "accession": "KU168273", "clade_membership": {"value": "H"}, "country": {"value": "CD"}, "date": {"value": 2004.0}, "Strain_name": {"value": "LA19KoSa"}, "LANL_subtype": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["C23T", "G92A", "T156A", "A161G", "G365C", "G378A", "T396C", "C426A", "G481A", "A494G", "A520G", "C525A", "A530C", "G542A", "T593C", "A604G", "A605C", "A608G", "T636C", "A645G", "A654G", "A660-", "A661-", "C662-", "C668T", "G707T", "A709G", "T718G", "C773T", "A797C", "G810A", "A820G", "A857C", "A869G", "T902C", "C904T", "C950T", "A952C", "A968C", "A980C", "T1004A", "C1006A", "G1036A", "T1037C", "T1055C", "G1090C", "C1094T", "A1097C", "C1115A", "A1124G", "A1157C", "C1187T", "G1232A", "T1244C", "T1271G", "A1278G", "A1279G", "G1298A", "A1349G", "A1362G", "A1367G", "G1394A", "T1422C", "C1439T", "T1444C", "C1460T", "C1478T", "G1503A", "C1523T", "A1526G", "A1536C", "C1541T", "C1571T", "T1583C", "C1613T", "G1619A", "A1661G", "T1676C", "C1682T", "C1692A", "C1744A", "C1756T", "G1766A", "C1782-", "C1783-", "-1785T", "-1786C", "T1790C", "A1819G", "G1857A", "T1895C", "A1918G", "G1942A", "T1954C", "C1960T", "A1988T", "C1996A", "A2007G", "A2032G", "T2080A", "C2127A", "G2173A", "A2233G", "C2263T", "A2300T", "C2326T", "T2383C", "A2414T", "T2443C", "C2467T", "T2497C", "A2512C", "G2518A", "G2539A", "A2572C", "C2605A", "C2615G", "A2617G", "T2635A", "A2686G", "C2694A", "A2710G", "A2743C", "G2761A", "C2822T", "A2825G", "A2881G", "G2914A", "T2917C", "G2926A", "C2930T", "C2942A", "G2951A", "A2965T", "C2968G", "C2975A", "A3001G", "T3022C", "A3031G", "T3049C", "G3145A", "A3164G", "T3184C", "A3196G", "T3223A", "A3224G", "C3225T", "A3226G", "A3229G", "A3250G", "A3259G", "A3283G", "T3310C", "A3316G", "C3319T", "C3346G", "C3359T", "T3368C", "A3370G", "A3387C", "A3414T", "G3431T", "C3469T", "G3494A", "G3505A", "G3523A", "A3529G", "A3535C", "T3550C", "G3564A", "C3577T", "T3625C", "T3644A", "G3679A", "G3685A", "C3691T", "G3718A", "T3742C", "A3745G", "C3751A", "A3755G", "C3763T", "T3793C", "A3805G", "C3826T", "G3859A", "T3889C", "G3925A", "A3949C", "A3985G", "T3991C", "G3997A", "A4003G", "C4015T", "C4039T", "A4076G", "C4085T", "A4141T", "A4231G", "G4394A", "C4428T", "A4433G", "T4498C", "C4501G", "A4555G", "A4592C", "G4622A", "A4625G", "G4631A", "A4643T", "A4644G", "C4667T", "T4670C", "T4679C", "A4722T", "C4726G", "T4727A", "A4735G", "C4786A", "T4799G", "T4826C", "G4887A", "C4898T", "A4901C", "C4911T", "C4914T", "T5028C", "A5037T", "G5075A", "T5084C", "G5086C", "G5090A", "A5112G", "G5128A", "C5149T", "T5197G", "G5200A", "C5213A", "C5214T", "G5236A", "C5280A", "T5293C", "A5302G", "A5305G", "T5399G", "T5415C", "A5421C", "G5427A", "A5432C", "A5433T", "T5448G", "A5461G", "A5462C", "G5463A", "C5479T", "A5481C", "T5492C", "A5495C", "T5511C", "C5535A", "G5546A", "G5554A", "C5555G", "G5561A", "C5579A", "A5587G", "T5599G", "A5601C", "A5607C", "-5608A", "-5609T", "-5610T", "-5611A", "-5612T", "-5613A", "-5614C", "-5615G", "T5616C", "A5617-", "T5618-", "A5619-", "T5621-", "A5622-", "G5623-", "A5626C", "A5632G", "A5640C", "A5643G", "T5654C", "C5663T", "A5664G", "C5679T", "G5700A", "G5706A", "A5709G", "C5727T", "G5730A", "T5731A", "T5781G", "A5825C", "C5839A", "G5856A", "C5862A", "C5878T", "A5917G", "C5924T", "C5929T", "A5995G", "A6009G", "A6019G", "T6024G", "A6031C", "G6043A", "C6067T", "A6076C", "G6079A", "A6088G", "C6160T", "G6167A", "T6169G", "-6174G", "T6178C", "T6184C", "A6185C", "A6188G", "-6189C", "-6194G", "-6195T", "-6196A", "-6198G", "-6199T", "-6200A", "-6201G", "-6202C", "-6206A", "-6207G", "-6208T", "-6209A", "-6210T", "-6211C", "-6212A", "-6213T", "-6214T", "-6215T", "-6216C", "-6217T", "-6218G", "-6219A", "-6220T", "-6221G", "-6222T", "-6223C", "G6224A", "G6225A", "-6226T", "A6229C", "T6231G", "A6232T", "A6233T", "A6234T", "A6235G", "G6251A", "T6252C", "G6260A", "A6275C", "A6282G", "C6287A", "A6288C", "C6293A", "T6298C", "G6303A", "C6305G", "T6322A", "T6325G", "T6337A", "A6339T", "T6358C", "T6369C", "C6396A", "G6466T", "A6481G", "C6489A", "A6490G", "A6508G", "T6511C", "G6532A", "A6535G", "T6541C", "G6547A", "C6563T", "A6565G", "C6575A", "A6602T", "C6607T", "A6609G", "G6626A", "G6631A", "T6637A", "A6647G", "T6652C", "C6654A", "C6665A", "C6667T", "C6670T", "A6685G", "A6695T", "-6697T", "A6728T", "A6734G", "T6735A", "C6752A", "A6753G", "A6776G", "C6779A", "A6780G", "C6797G", "A6801G", "G6802C", "G6803A", "C6810A", "A6814G", "T6815C", "A6825T", "C6826A", "T6829G", "T6838C", "A6839C", "A6848G", "A6856C", "C6857T", "T6916C", "G6935A", "C6951T", "-6956T", "-6957A", "-6958T", "-6959A", "-6960A", "-6961T", "-6962G", 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"G8242A", "T8268G", "T8287C", "T8323G", "G8354A", "G8365-", "T8366-", "A8367-", "G8368-", "T8369-", "A8372G", "A8388G", "G8429A", "G8441A", "A8459G", "C8504T", "T8511A", "A8584T", "C8699T", "A8762G", "G8798T", "A8804G", "G8805A", "A8829T", "G8864T", "G8873A", "C8904A", "A8909G", "C8934A", "T8935C", "T8939C", "G8942A", "G8943C", "A8954G", "C8960A", "T8972A", "T9019G", "C9028T", "T9068C", "C9108T", "G9177A"], "INT": ["M50I", "I101V", "D207N", "T218L", "I220V", "K273Q", "G283S", "R284G", "D286N"], "RT-p51": ["T11K", "T69S", "T107S", "Q174E", "A200E", "P243S", "I244V", "L283I", "A286T", "D291E", "P294T", "M357V", "T377V", "K431T", "Y440F"], "RT-p66": ["T11K", "T69S", "T107S", "Q174E", "A200E", "P243S", "I244V", "L283I", "A286T", "D291E", "P294T", "M357V", "T377V", "K431T", "Y440F", "A446S", "M452I", "V467I", "G490E", "L517I", "S554A"], "gp120": ["S1N", "A3E", "N52S", "V57R", "E59D", "E74D", "-105K", "-106V", "-107S", "-109N", "-111H", "-112A", "-114V", "-115S", "-116S", "-117S", "-118I", "-120I", "-121S", "-122D", "-123V", "-124N", "E125D", "L126R", "K127L", "V133T", "E136I", "K141Q", "K143R", "H145T", "L147I", "L151V", "I156M", "T161M", "V172A", "S181N", "T212K", "-241K", "T250S", "N252S", "V258I", "N261K", "T269I", "P271T", "H280R", "I281F", "T292S", "G293D", "Q300R", "T308E", "Q309R", "H315D", "K316S", "V317I", "T319K", "H324L", "F325L", "N327-", "K329Q", "I332V", "P335S", "T366I", "-368Y", "S370G", "-381G", "-382L", "-384G", "-385T", "Q412R", "N414D", "V418E", "R428S", "G430Y", "-433T", "-436G", "N437S", "-438V", "F440L", "G443T", "V468I", "T471S", "K472R"], "gp41": ["I24M", "T25A", "L91I", "S101A", "S107T", "Q108R", "D109E", "D113E", "D121E", "S125D", "R133K", "K144Q", "D148E", "A151E", "K172R", "I173L", "V194I", "D217E", "D232G", "V245F", "L249I", "R259H", "L273I", "G278V", "Q294K", "V322G", "F340L"], "nef": ["S8M", "S9V", "I10-", "V11-", "I16V", "W57R", "Y81F", "E152D", "E155K", "E174D", "L198T", "E201Q", "C206*"], "p17": ["A15T", "L31I", "G49D", "E62G", "L64I", "Q65H", "Q90R", "I104V", "I107V", "N109-", "K124N", "D125S", "S126Q", "K127N"], "p2": ["V7A"], "p24": ["V27I", "K30R", "T58I", "N74T", "E79D", "P92Q", "S102N", "G120A", "D128E", "N183G", "I211V"], "p6": ["P5T", "T22N", "P23-", "S24P", "P25S", "-26L", "P35S", "N47S"], "p7": ["V13I", "I24L"], "pro": ["R20K", "I64L", "K70R"], "rev": ["E11K", "Q14E", "V16I", "L22I", "P31S", "A32T", "Q36K", "S56G", "I59V", "C63L", "P67H", "A68Q", "T91N", "T112E"], "tat": ["L8R", "K19A", "N24K", "K29A", "Q35Y", "L39S", "K40T", "G57E", "A60R", "S62N", "P68H", "K71E", "T77I", "R78H", "T82K"], "vif": ["E2D", "T20A", "T47R", "K50R", "T67K", "G101S", "Q105H", "H110Y", "T151S", "R167T", "V170A", "K176E", "R181K", "T188I"], "vpr": ["Q3R", "P37I", "A59D"], "vpu": ["M1I", "I4-", "L5-"]}, "labels": {"aa": "INT: M50I, I101V, D207N, T218L, I220V, K273Q, G283S, R284G, D286N; RT-p51: T11K, T69S, T107S, Q174E, A200E, P243S, I244V, L283I, A286T, D291E, P294T, M357V, T377V, K431T, Y440F; RT-p66: T11K, T69S, T107S, Q174E, A200E, P243S, I244V, L283I, A286T, D291E, P294T, M357V, T377V, K431T, Y440F, A446S, M452I, V467I, G490E, L517I, S554A; gp120: S1N, A3E, N52S, V57R, E59D, E74D, -105K, -106V, -107S, -109N, -111H, -112A, -114V, -115S, -116S, -117S, -118I, -120I, -121S, -122D, -123V, -124N, E125D, L126R, K127L, V133T, E136I, K141Q, K143R, H145T, L147I, L151V, I156M, T161M, V172A, S181N, T212K, -241K, T250S, N252S, V258I, N261K, T269I, P271T, H280R, I281F, T292S, G293D, Q300R, T308E, Q309R, H315D, K316S, V317I, T319K, H324L, F325L, N327-, K329Q, I332V, P335S, T366I, -368Y, S370G, -381G, -382L, -384G, -385T, Q412R, N414D, V418E, R428S, G430Y, -433T, -436G, N437S, -438V, F440L, G443T, V468I, T471S, K472R; gp41: I24M, T25A, L91I, S101A, S107T, Q108R, D109E, D113E, D121E, S125D, R133K, K144Q, D148E, A151E, K172R, I173L, V194I, D217E, D232G, V245F, L249I, R259H, L273I, G278V, Q294K, V322G, F340L; nef: S8M, S9V, I10-, V11-, I16V, W57R, Y81F, E152D, E155K, E174D, L198T, E201Q, C206*; p17: A15T, L31I, G49D, E62G, L64I, Q65H, Q90R, I104V, I107V, N109-, K124N, D125S, S126Q, K127N; p2: V7A; p24: V27I, K30R, T58I, N74T, E79D, P92Q, S102N, G120A, D128E, N183G, I211V; p6: P5T, T22N, P23-, S24P, P25S, -26L, P35S, N47S; p7: V13I, I24L; pro: R20K, I64L, K70R; rev: E11K, Q14E, V16I, L22I, P31S, A32T, Q36K, S56G, I59V, C63L, P67H, A68Q, T91N, T112E; tat: L8R, K19A, N24K, K29A, Q35Y, L39S, K40T, G57E, A60R, S62N, P68H, K71E, T77I, R78H, T82K; vif: E2D, T20A, T47R, K50R, T67K, G101S, Q105H, H110Y, T151S, R167T, V170A, K176E, R181K, T188I; vpr: Q3R, P37I, A59D; vpu: M1I, I4-, L5-"}}}, {"name": "MN486046", "node_attrs": {"div": 0.11771000000000001, "accession": "MN486046", "clade_membership": {"value": "H"}, "country": {"value": "BE"}, "date": {"value": 2006.0}, "Strain_name": {"value": "CX"}, "LANL_subtype": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["A359G", "A370G", "A412G", "A417C", "G424A", "A428G", "C471A", "G495T", "A500G", "A509G", "C510A", "A516C", "A549T", "T570C", "T572C", "T575C", "G579A", "C587T", "C590T", "C596T", "A605G", "G614T", "T635C", "T641A", "A642C", "G651A", "A666G", "A676G", "A678T", "G687A", "C688A", "C694A", "A701G", "G707A", "G712A", "A758G", "G818A", "A860G", "C872T", "C879T", "A880C", "C926T", "G956A", "G1077A", "A1097T", "C1098G", "C1099T", "C1103T", "A1142G", "T1143C", "T1148C", "T1169C", "C1175T", "A1192G", "T1214C", "T1244A", "A1274G", "A1277G", "G1301A", "C1351A", "T1385C", "A1404G", "G1452A", "C1492A", "A1499G", "A1508G", "G1601A", "A1607G", "G1691A", "A1733G", "G1734-", "A1735-", "G1736-", "A1740G", "T1741A", "G1742A", "C1744T", "C1745G", "-1746A", "-1747C", "-1748C", "C1768T", "C1775A", "C1831T", "A1907C", "C1913T", "C1987T", "A2002C", "A2012G", "T2017A", "T2080G", "A2125G", "C2149G", "T2158C", "C2281T", "A2332G", "G2359T", "A2398G", "G2422A", "T2440C", "C2456T", "A2463G", "A2498G", "A2579T", "G2580A", "T2607A", "T2608C", "A2629G", "G2683A", "T2735C", "A2752G", "T2779G", "A2788G", "C2806T", "G2821A", "A2829C", "G2833A", "C2909G", "A2919G", "C2927A", "A2965C", "C2968T", "A2974G", "T3002C", "G3019A", "G3025A", "C3067G", "A3124G", "A3162G", "G3168A", "A3192G", "T3271C", "A3277G", "A3280G", "C3322T", "G3334A", "G3340A", "A3388G", "G3439A", "T3450A", "A3478G", "A3481G", "C3504T", "A3508C", "T3530C", "A3535T", "T3567C", "T3589C", "A3592C", "T3602C", "T3644C", "A3655G", "A3733G", "A3766G", "C3773T", "G3891A", "T3898C", "T3962C", "A3982G", "C4021T", "T4075C", "A4076C", "A4078G", "T4144C", "G4145A", "C4146A", "G4150A", "T4198C", "G4255A", "C4258T", "A4306G", "C4381T", "C4396T", "T4427A", "A4432T", "A4549G", "A4564G", "A4642G", "G4673T", "G4685A", "A4688G", "A4721G", "G4736A", "T4772C", "A4838G", "G4888A", "A4900G", "A4937G", "A4951G", "A4952T", "C5006T", "A5007C", "A5042T", "C5052T", "A5058C", "C5062A", "T5073C", "G5094A", "C5147T", "A5148T", "A5187G", "T5194G", "T5203C", "G5211A", "G5212C", "C5225A", "A5227C", "A5233G", "T5239G", "T5245C", "A5277T", "C5351T", "T5357C", "C5358A", "G5363A", "T5371C", "T5382G", "T5391C", "A5396G", "T5399A", "A5446T", "A5447C", "T5454C", "C5469T", "T5482A", "A5499G", "T5606A", "-5620T", "-5624A", "A5640G", "T5655C", "A5665G", "A5685G", "G5707T", "A5711G", "T5731C", "A5742G", "A5748T", "C5769T", "A5795C", "A5796T", "T5826C", "A5831C", "T5834C", "C5851A", "G5861A", "T5870A", "G5902A", "A5911T", "A5916C", "A5963G", "A5964T", "T5968C", "C5989T", "A6030G", "G6059A", "A6076G", "A6092G", "A6119C", "A6158G", "T6169A", "G6170T", "A6172C", "-6174A", "A6185G", "A6188-", "C6190-", "A6191-", "A6192-", "T6193-", "A6197-", "-6226G", "A6232G", "T6242A", "A6254G", "A6257G", "C6258A", "T6261A", "T6264G", "A6265T", "C6278A", "A6282C", "T6285C", "A6288G", "A6302G", "G6303C", "G6311A", "C6318A", "G6323A", "G6326A", "T6328A", "A6329G", "A6330C", "T6331A", "A6333C", "C6336A", "T6337C", "A6339C", "G6340A", "C6347T", "T6351C", "A6353C", "A6362G", "C6364T", "C6375A", "G6379A", "T6418C", "A6461G", "A6471G", "C6482T", "C6483T", "A6484G", "C6499T", "A6520G", "A6538C", "A6544G", "C6548T", "C6562T", "G6566C", "C6567T", "A6570C", "A6573G", "G6577A", "A6583G", "C6601T", "A6640G", "A6649C", "C6655T", "A6659G", "A6682G", "A6686G", "A6691T", "G6693A", "-6697G", "C6713A", "A6714G", "C6717G", "C6729A", "A6730T", "T6733C", "T6738C", "A6751G", "A6805G", "A6818G", "C6824T", "T6829C", "-6833A", "-6834A", "-6835C", "A6839G", "A6840C", "A6848-", "T6850C", "A6855C", "T6860C", "T6863C", "G6880A", "C6885T", "A6886G", "G6894C", "G6935C", "-6968T", "-6969G", "-6970G", "-6971A", "-6973C", "-6975A", "-6979C", "-6980G", "-6984C", "-6985A", "-6989G", "-6994A", "-6996C", "-6998G", "-6999C", "-7006C", "C7008A", "-7009T", "C7020A", "T7047A", "A7063G", "A7088C", "A7089C", "G7106A", "A7112G", "T7117C", "A7136C", "G7137A", "C7141T", "G7145C", "T7147G", "A7151G", "T7156C", "A7158C", "G7160A", "-7162T", "-7164C", "T7165C", "-7166A", "-7167C", "C7170T", "C7250T", "A7261C", "A7265G", "C7266G", "G7315A", "T7322G", "T7325C", "G7364A", "T7370G", "A7373C", "G7440A", "G7448C", "T7462G", "G7519A", "G7552A", "C7561A", "A7620G", "C7625T", "G7627C", "G7628T", "A7629C", "A7633T", "A7646C", "A7669G", "C7684T", "A7711G", "A7761G", "C7762T", "A7763G", "A7765T", "C7775T", "T7796A", "T7801G", "C7940T", "G7942C", "C7943A", "G7944A", "A7969C", "T8008A", "A8019C", "C8047T", "A8104G", "G8107C", "T8176C", "C8213T", "A8216G", "A8263G", "T8278C", "G8304C", "G8329A", "-8370G", "G8409C", "A8425C", "A8447G", "A8455C", "G8458C", "C8499T", "G8502A", "A8503G", "G8534T", "A8537G", "A8564G", "A8580T", "G8590C", "C8661G", "A8662C", "G8666C", "T8685C", "A8701T", "C8775T", "C8904T", "G8905C", "C8906A", "G8942T"], "INT": ["S39N", "I101L", "A124N", "K219N"], "RT-p51": ["W88C", "H121Y", "D123G", "I135V", "S162Y", "F171Y", "I178M", "F214L", "K245T", "P272A", "K275R", "Q278K", "D324E", "K356R", "R358K", "K366R"], "RT-p66": ["W88C", "H121Y", "D123G", "I135V", "S162Y", "F171Y", "I178M", "F214L", "K245T", "P272A", "K275R", "Q278K", "D324E", "K356R", "R358K", "K366R", "M452K", "T470M", "E471D", "L491S", "S554T"], "gp120": ["A3T", "L6M", "E19D", "K21T", "K37V", "V57L", "E59G", "E69K", "I80V", "K89Q", "N102D", "-105D", "N108-", "T110-", "N113-", "-124G", "S130T", "T134A", "T135E", "I137S", "Q142K", "K143T", "V144A", "H145R", "K150A", "V153I", "P155Q", "D157N", "N159S", "-162K", "I166T", "N167H", "T170A", "T174K", "S181T", "K203E", "N206S", "P210L", "A238N", "E239L", "E240A", "-241G", "V242Q", "I243V", "E265N", "N267T", "T269V", "S278G", "I281M", "Q287R", "A288G", "F289M", "Y290F", "A291Y", "T292A", "G293N", "T308K", "R322G", "H324Y", "-326N", "N328A", "K329T", "T330I", "I332-", "S336P", "S337P", "T344M", "S347T", "K361Q", "-368T", "N369W", "T371N", "-372N", "-373S", "-375A", "-376I", "-377V", "-381N", "-382G", "P389Q", "Q412P", "V418I", "N420D", "R428H", "V431L", "-433G", "N435T", "-436N", "N437T", "-438T", "T439I", "T471G"], "gp41": ["M4I", "F7V", "F8L", "A21T", "S23A", "I24L", "R46K", "E49Q", "H53Q", "K106R", "Q108Y", "D109S", "E110D", "M115L", "D129E", "D153G", "K154D", "S165T", "N166K", "P213S", "R214K", "L304F", "N305D", "R334T"], "nef": ["I10V", "A23T", "E24R", "E28A", "D38A", "R39T", "P53S", "D54S", "E64D", "T80S", "G83A", "Q107A", "E108D", "Y115H", "Y120F", "C163S"], "p17": ["K12R", "K26R", "K28Q", "R30K", "L46I", "A54S", "Q59K", "I61L", "T72S", "Y79H", "V82I", "E93D", "D102E", "K103Q", "E106K", "S111G", "K114R", "T115S", "A118K", "A120D", "S126N"], "p2": ["A10T"], "p24": ["Q50S", "A116T", "P123V", "K154R", "E180D", "P207Q", "S225G"], "p6": ["P30L", "D32E", "S51L"], "p7": ["P9Q"], "pro": ["N37H", "P39S", "I72V"], "rev": ["D7A", "P31L", "A32Q", "S54T", "E57D", "P67S", "S86G", "E87Q"], "tat": ["D2E", "N7S", "L8Q", "K19E", "N24S", "L36M", "R53S", "T77P", "G79D", "D80H", "*87S"], "vif": ["N19R", "M29I", "S46T", "G101D", "Q105R", "K122S", "K141Q", "P156S", "T159R", "V170T", "T188S"], "vpr": ["H15F", "N28S", "R36N", "Q41N", "H45Q", "E58V", "V89A", "S93A", "S96P"], "vpu": ["-6E", "I13V", "I18L", "I20V", "V21I", "R37K", "R47S", "K63T", "-75A", "-77W", "-78H", "L82M"]}, "labels": {"aa": "INT: S39N, I101L, A124N, K219N; RT-p51: W88C, H121Y, D123G, I135V, S162Y, F171Y, I178M, F214L, K245T, P272A, K275R, Q278K, D324E, K356R, R358K, K366R; RT-p66: W88C, H121Y, D123G, I135V, S162Y, F171Y, I178M, F214L, K245T, P272A, K275R, Q278K, D324E, K356R, R358K, K366R, M452K, T470M, E471D, L491S, S554T; gp120: A3T, L6M, E19D, K21T, K37V, V57L, E59G, E69K, I80V, K89Q, N102D, -105D, N108-, T110-, N113-, -124G, S130T, T134A, T135E, I137S, Q142K, K143T, V144A, H145R, K150A, V153I, P155Q, D157N, N159S, -162K, I166T, N167H, T170A, T174K, S181T, K203E, N206S, P210L, A238N, E239L, E240A, -241G, V242Q, I243V, E265N, N267T, T269V, S278G, I281M, Q287R, A288G, F289M, Y290F, A291Y, T292A, G293N, T308K, R322G, H324Y, -326N, N328A, K329T, T330I, I332-, S336P, S337P, T344M, S347T, K361Q, -368T, N369W, T371N, -372N, -373S, -375A, -376I, -377V, -381N, -382G, P389Q, Q412P, V418I, N420D, R428H, V431L, -433G, N435T, -436N, N437T, -438T, T439I, T471G; gp41: M4I, F7V, F8L, A21T, S23A, I24L, R46K, E49Q, H53Q, K106R, Q108Y, D109S, E110D, M115L, D129E, D153G, K154D, S165T, N166K, P213S, R214K, L304F, N305D, R334T; nef: I10V, A23T, E24R, E28A, D38A, R39T, P53S, D54S, E64D, T80S, G83A, Q107A, E108D, Y115H, Y120F, C163S; p17: K12R, K26R, K28Q, R30K, L46I, A54S, Q59K, I61L, T72S, Y79H, V82I, E93D, D102E, K103Q, E106K, S111G, K114R, T115S, A118K, A120D, S126N; p2: A10T; p24: Q50S, A116T, P123V, K154R, E180D, P207Q, S225G; p6: P30L, D32E, S51L; p7: P9Q; pro: N37H, P39S, I72V; rev: D7A, P31L, A32Q, S54T, E57D, P67S, S86G, E87Q; tat: D2E, N7S, L8Q, K19E, N24S, L36M, R53S, T77P, G79D, D80H, *87S; vif: N19R, M29I, S46T, G101D, Q105R, K122S, K141Q, P156S, T159R, V170T, T188S; vpr: H15F, N28S, R36N, Q41N, H45Q, E58V, V89A, S93A, S96P; vpu: -6E, I13V, I18L, I20V, V21I, R37K, R47S, K63T, -75A, -77W, -78H, L82M"}}}]}, {"name": "H_NODE_0000002", "node_attrs": {"div": 0.06009, "clade_membership": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["C96T", "A530G", "T1262C", "T1325C", "C1331T", "A1657G", "T1985G", "A2059G", "A2320G", "A2989G", "A2998G", "G3010A", "A3027G", "C3346T", "T3349C", "C3751T", "A3755T", "G3796A", "T3946C", "G4176A", "A4219G", "A4567G", "C4665T", "C4715T", "A5560G", "-5620T", "-5624G", "A5664C", "T5772C", "A5787C", "G5802C", "A5805G", "T5836G", "A6022G", "T6046C", "A6192G", "-6194A", "-6196T", "-6210T", "-6221A", "-6222A", "-6223A", "A6394G", "G6466A", "A6647C", "C6667A", "G6774A", "-6834A", "-6989A", "C7486T", "A7487G", "A7549G", "T7642C", "C7651T", "A7714C", "G7992A", "A8076G", "G8208A", "A8269G", "T8281G", "-8370A", "A8446G", "C8485T", "G8506C", "T8507C", "A8555G", "T8607C", "T8608A", "C8640T", "T8883C", "C8913T", "G8914T"], "INT": ["G134D", "T218S"], "RT-p51": ["K311R"], "RT-p66": ["K311R"], "gp120": ["I56M", "E136V", "G307E", "N334K"], "gp41": ["I62V", "H258R", "S302N"], "nef": ["C55S", "F89H", "S188R", "R191F"], "p1": ["N9S"], "p17": ["S111N"], "vif": ["H27Y"], "vpu": ["-6G", "L34V", "R35K"]}, "labels": {"aa": "INT: G134D, T218S; RT-p51: K311R; RT-p66: K311R; gp120: I56M, E136V, G307E, N334K; gp41: I62V, H258R, S302N; nef: C55S, F89H, S188R, R191F; p1: N9S; p17: S111N; vif: H27Y; vpu: -6G, L34V, R35K"}}, "children": [{"name": "KY392779", "node_attrs": {"div": 0.11283, "accession": "KY392779", "clade_membership": {"value": "H"}, "country": {"value": "CD"}, "date": {"value": 2001.0}, "Strain_name": {"value": "CG_0260_02V_NGSID16"}, "LANL_subtype": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["G121T", "A133T", "T227C", "A256G", "G265A", "G378A", "C379A", "A380G", "A418G", "A461C", "C479T", "G480A", "C522A", "C558A", "C561A", "A569G", "A571T", "A592G", "T593G", "A605G", "A618G", "A619C", "T635C", "T641C", "G644A", "A645C", "A647G", "A659G", "C662A", "A665G", "G667A", "C681A", "A682G", "T698G", "C713T", "C749T", "A758G", "G771C", "A774T", "G818A", "C872T", "C884T", "G891A", "A941G", "C978A", "T979C", "T1052A", "T1064A", "G1085A", "C1098A", "C1099G", "C1115A", "C1118T", "A1151G", "A1193G", "C1209T", "A1226G", "T1271G", "A1291C", "T1316C", "A1346G", "T1358A", "T1359A", "G1388A", "C1610G", "T1611A", "G1612C", "C1613A", "A1614G", "C1615A", "G1619C", "A1622T", "C1623-", "A1624-", "G1625-", "C1627G", "T1628C", "T1632G", "T1646C", "G1687A", "A1740G", "A1777G", "A1838G", "T1853C", "G1858A", "A1908G", "C1913T", "A1918G", "A1921T", "C1979G", "G1985A", "C1986A", "C1987T", "A2007G", "C2044T", "A2152G", "A2154G", "C2211A", "A2212T", "C2281T", "G2293A", "A2329G", "C2449T", "G2462A", "A2463G", "G2470A", "A2482C", "T2499C", "G2539A", "G2550T", "A2551T", "T2552A", "A2557G", "G2567C", "C2596T", "A2614G", "G2714A", "T2716A", "A2755G", "T2779C", "C2831T", "T2908C", "C2909T", "C2930T", "T2935C", "A3001G", "T3045C", "G3236A", "C3266T", "C3303T", "G3307A", "G3334C", "C3356T", "A3367G", "A3370G", "G3391C", "C3399A", "G3401A", "A3410G", "C3411A", "T3412C", "A3414G", "G3439A", "A3451G", "A3491G", "G3494A", "T3649C", "C3712T", "T3778C", "A3808T", "A3825C", "T3844C", "G3859A", "G3884A", "T3909A", "A3913G", "A3973C", "G3997A", "A4084G", "A4109G", "G4186A", "C4201T", "A4225G", "T4234C", "A4246G", "C4276A", "A4312T", "G4388T", "A4438C", "A4522G", "G4622A", "A4643T", "T4678G", "A4721C", "C4726A", "T4761G", "T4776C", "C4803A", "T4826C", "T4957C", "C4965T", "G4982T", "A4993C", "A5007C", "C5019T", "G5030A", "G5036A", "A5046G", "A5059G", "C5062G", "A5085C", "G5086A", "A5087G", "A5155G", "T5206C", "A5215T", "C5222T", "T5228C", "A5233G", "G5257A", "T5281C", "A5284C", "C5294T", "G5296A", "C5303T", "C5333T", "C5356A", "G5359T", "G5386A", "T5391C", "C5397A", "C5398T", "C5412G", "A5431C", "G5437C", "C5445T", "A5447C", "T5448C", "T5451C", "A5453T", "A5480C", "A5495G", "G5496A", "T5511C", "G5534C", "G5545C", "A5548C", "G5554A", "C5555A", "A5556G", "A5565G", "A5575G", "C5579T", "A5581G", "C5584T", "T5606A", "A5619C", "C5641T", "A5644G", "T5684C", "A5689C", "C5727A", "A5739C", "A5784G", "T5788A", "T5789C", "-5791G", "C5792A", "C5793A", "C5797T", "-5799A", "G5800T", "T5801C", "G5803A", "-5806C", "G5808T", "-5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5825G", "G5845C", "T5852A", "C5869A", "A5884C", "G5956C", "A6008G", "A6031G", "A6050G", "A6060G", "T6064C", "G6065A", "C6067T", "A6076C", "C6097T", "C6165G", "T6166A", "G6167A", "A6179G", "A6180T", "T6181A", "T6184C", "-6189G", "C6190T", "-6195G", "-6198T", "-6199T", "-6200G", "-6201A", "-6202T", "-6203G", "-6204C", "-6205C", "-6206A", "-6207C", "-6208A", "-6209A", "-6211G", "G6225A", "-6226G", "G6251A", "T6252C", "G6260A", "A6263T", "T6298C", "G6303A", "G6323A", "T6325A", "T6328G", "A6329G", "T6331G", "A6333T", "C6336A", "T6337G", "G6340T", "C6347T", "A6371G", "G6391A", "T6395A", "A6430T", "T6436G", "A6470G", "A6475G", "C6477G", "A6490G", "A6508G", "A6544G", "G6572-", "A6573-", "A6574-", "A6602T", "C6607T", "A6609G", "C6612A", "C6641T", "A6648C", "A6679G", "A6683C", "T6688-", "T6690-", "A6691-", "C6692-", "G6693-", "A6695G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702C", "T6720A", "C6721T", "T6722G", "A6723T", "T6724A", "G6725A", "A6728G", "C6729G", "A6730T", "T6733A", "G6743A", "A6754G", "C6758T", "A6765C", "G6771A", "C6777T", "G6790A", "T6793C", "C6797G", "C6799T", "A6809G", "C6824T", "A6825C", "C6826T", "-6830C", "-6831C", "-6832A", "-6833G", "-6835G", "A6836-", "A6837-", "T6838-", "A6839G", "A6840G", "C6874T", "A6877G", "A6936C", "C6938T", "T6949G", "C6951T", "-6956A", "-6957G", "-6958C", "-6959A", "-6960A", "-6961T", "-6962G", "-6963A", "-6964T", "-6968T", "-6969T", "A6974-", "T6976-", "A6978-", "A6986-", "A6987-", "C6993A", "-6994C", "-6996C", "-6998G", "-6999G", "-7004A", "-7005G", "-7006C", "-7009A", "C7014A", "C7087T", "A7088G", "A7136C", "G7146A", "A7149G", "T7150C", "G7152C", "C7155G", "T7156C", "T7159-", "G7160-", "A7161-", "A7163-", "T7165C", "-7166C", "-7167A", "G7182C", "G7197A", "G7198A", "T7217C", "A7221G", "T7222G", "A7238C", "G7256A", "G7276A", "A7279G", "T7321G", "T7324G", "A7396G", "C7429T", "T7489C", "G7495A", "C7561A", "T7622A", "G7628A", "T7630G", "G7660A", "T7661A", "G7663A", "A7665G", "T7666A", "A7667G", "T7674G", "A7676G", "T7682G", "A7689G", "A7693G", "C7747A", "G7754T", "C7762T", "G7777A", "T7801A", "T7852C", "C7959T", "G7964A", "A7998G", "T8007C", "T8008G", "C8009A", "A8023G", "A8029G", "C8047T", "G8079T", "A8092T", "C8149G", "T8164C", "C8165A", "C8171A", "A8172G", "G8188A", "T8203C", "T8279G", "C8286G", "T8290C", "A8297G", "T8302C", "G8317A", "C8320T", "G8407A", "G8412C", "A8413G", "G8458A", "A8459C", "G8490T", "C8494G", "T8495A", "C8499G", "T8505A", "T8511C", "G8512A", "C8552T", "T8595G", "T8636A", "T8644C", "G8666C", "C8669T", "C8676T", "G8678A", "C8684T", "A8740T", "T8746A", "G8807A", "T8813C", "C8832T", "G8846A", "A8869C", "G8882A", "A8886C", "T8887A", "T8903C", "G8905A", "C8906G", "A8912C", "G8915T", "A8918G", "T8947A", "C8992A", "C9028T", "T9029C", "C9075T", "C9078T"], "INT": ["E11D", "N17T", "V37I", "L45Q", "D167E", "A205S", "Q221H", "G283S"], "RT-p51": ["K20R", "T39N", "D123S", "I135T", "G152V", "W153R", "A158P", "A207T", "P272S", "V317A", "V381I", "T403I", "E413D", "H421Y", "E432D", "A435E", "G436R", "T439D", "Y440S"], "RT-p66": ["K20R", "T39N", "D123S", "I135T", "G152V", "W153R", "A158P", "A207T", "P272S", "V317A", "V381I", "T403I", "E413D", "H421Y", "E432D", "A435E", "G436R", "T439D", "Y440S", "I466V", "V467I"], "gp120": ["N5K", "E34D", "N52D", "N66D", "E69G", "D71N", "E74D", "T104R", "-109V", "T110N", "-111V", "-112T", "-114S", "-115S", "-116S", "-117I", "-118D", "-119A", "-120T", "-121M", "-123K", "-124E", "V133T", "V136I", "I137L", "D157K", "N159Q", "T160D", "-162Y", "I173V", "S181T", "N206D", "T208R", "E240Q", "T250S", "N252S", "T253N", "P263S", "E265P", "N267T", "K277Q", "I279V", "I281T", "F289L", "Y290V", "A291T", "T292G", "D294I", "D297N", "H302Y", "N304T", "S306N", "T308I", "H315D", "T319A", "H324S", "-326P", "N327E", "N328G", "K329-", "I341M", "K361A", "S365R", "T366I", "-368S", "S370D", "-372F", "T374-", "-381G", "-382N", "-383S", "-384T", "-385R", "T387K", "Q412E", "G431D", "N432S", "-433T", "-436H", "N437T", "T439-", "G443A", "R448K", "Y456W", "K462Q", "V468I"], "gp41": ["F7L", "S107T", "D109K", "W120R", "D121G", "R122G", "I124S", "Y127D", "D129G", "E137D", "D148E", "A151S", "N166K", "P219L", "G221R", "D232G", "I235T", "R259L", "L263F", "L288I", "Q290R", "C326G", "A328G", "I332V"], "nef": ["R22Q", "E24R", "Q35R", "R39N", "T48I", "A50S", "T51R", "P53A", "S55T", "W57Q", "F85V", "D98E", "I101T", "E108D", "E133V", "F135Y", "C163S", "E176A", "M182Q", "R188Q", "F202Y"], "p1": ["F1V"], "p17": ["A15K", "K28R", "E42D", "G49S", "Q63K", "L75I", "Y79F", "Y86W", "K95A", "I104L", "N109K", "Q116R", "D121E"], "p2": ["A10S"], "p24": ["A14P", "I15L", "A54T", "L83T", "M118I", "P123S", "D128E", "P160S", "D187A", "S210T"], "p6": ["S3N", "M21V", "K33R"], "p7": ["D48E", "C49-", "R52D", "Q53S", "A54G"], "pro": ["K14E", "N37S", "P39S", "K41N", "Q61E", "S63N", "K70R"], "rev": ["D7P", "E10D", "E11D", "Q14R", "K17R", "R39K", "S54E", "I59V", "T61A", "P67S", "T82S", "Q101E", "S106H", "A108E", "A114T"], "tat": ["V4I", "N7K", "N12K", "K19Q", "A21P", "N24T", "Y26F", "Q35P", "K40R", "R53T", "G57R", "T58P", "A60K", "S62G", "N67D", "P68L", "I69V", "P70S", "P84S"], "vif": ["I31S", "E45D", "T47N", "L59V", "H73N", "I124T", "H127Y", "R132S", "Q136P", "K141Q", "I154V", "K158R", "T159R", "R167Q", "N190S"], "vpr": ["H40Y", "T84N", "R85L", "S94N", "S96P"], "vpu": ["I13V", "V26A", "I28L", "D40E", "E44D", "V65M", "-69R", "-70L", "-71N", "-72L", "H73G", "-75V", "V79-", "A80-", "L82Q"]}, "labels": {"aa": "INT: E11D, N17T, V37I, L45Q, D167E, A205S, Q221H, G283S; RT-p51: K20R, T39N, D123S, I135T, G152V, W153R, A158P, A207T, P272S, V317A, V381I, T403I, E413D, H421Y, E432D, A435E, G436R, T439D, Y440S; RT-p66: K20R, T39N, D123S, I135T, G152V, W153R, A158P, A207T, P272S, V317A, V381I, T403I, E413D, H421Y, E432D, A435E, G436R, T439D, Y440S, I466V, V467I; gp120: N5K, E34D, N52D, N66D, E69G, D71N, E74D, T104R, -109V, T110N, -111V, -112T, -114S, -115S, -116S, -117I, -118D, -119A, -120T, -121M, -123K, -124E, V133T, V136I, I137L, D157K, N159Q, T160D, -162Y, I173V, S181T, N206D, T208R, E240Q, T250S, N252S, T253N, P263S, E265P, N267T, K277Q, I279V, I281T, F289L, Y290V, A291T, T292G, D294I, D297N, H302Y, N304T, S306N, T308I, H315D, T319A, H324S, -326P, N327E, N328G, K329-, I341M, K361A, S365R, T366I, -368S, S370D, -372F, T374-, -381G, -382N, -383S, -384T, -385R, T387K, Q412E, G431D, N432S, -433T, -436H, N437T, T439-, G443A, R448K, Y456W, K462Q, V468I; gp41: F7L, S107T, D109K, W120R, D121G, R122G, I124S, Y127D, D129G, E137D, D148E, A151S, N166K, P219L, G221R, D232G, I235T, R259L, L263F, L288I, Q290R, C326G, A328G, I332V; nef: R22Q, E24R, Q35R, R39N, T48I, A50S, T51R, P53A, S55T, W57Q, F85V, D98E, I101T, E108D, E133V, F135Y, C163S, E176A, M182Q, R188Q, F202Y; p1: F1V; p17: A15K, K28R, E42D, G49S, Q63K, L75I, Y79F, Y86W, K95A, I104L, N109K, Q116R, D121E; p2: A10S; p24: A14P, I15L, A54T, L83T, M118I, P123S, D128E, P160S, D187A, S210T; p6: S3N, M21V, K33R; p7: D48E, C49-, R52D, Q53S, A54G; pro: K14E, N37S, P39S, K41N, Q61E, S63N, K70R; rev: D7P, E10D, E11D, Q14R, K17R, R39K, S54E, I59V, T61A, P67S, T82S, Q101E, S106H, A108E, A114T; tat: V4I, N7K, N12K, K19Q, A21P, N24T, Y26F, Q35P, K40R, R53T, G57R, T58P, A60K, S62G, N67D, P68L, I69V, P70S, P84S; vif: I31S, E45D, T47N, L59V, H73N, I124T, H127Y, R132S, Q136P, K141Q, I154V, K158R, T159R, R167Q, N190S; vpr: H40Y, T84N, R85L, S94N, S96P; vpu: I13V, V26A, I28L, D40E, E44D, V65M, -69R, -70L, -71N, -72L, H73G, -75V, V79-, A80-, L82Q"}}}, {"name": "H_NODE_0000003", "node_attrs": {"div": 0.06548999999999999, "clade_membership": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["A380T", "T641G", "C1094T", "A1274G", "A1277G", "C1351A", "C1768T", "A1804G", "A1819G", "T2086C", "T2245A", "A2414T", "A2825G", "A2925G", "G3169A", "T3170A", "C3322A", "A3387C", "A3565G", "A4293G", "T5382C", "G5561T", "T5562G", "C5839T", "A6019G", "A6087C", "-6189A", "-6195A", "-6219A", "-6220G", "A6734G", "T6735A", "-6835C", "T7144G", "A7153G", "-7162T", "A7252G", "G7448C", "A7713T", "A7722C", "G7846A", "A8276G", "T8277C", "G8354A", "C8440T", "A8469G", "T8597G", "C8609T", "G8805A", "T9180C"], "INT": ["K173R", "K219N"], "RT-p51": ["T107S", "I244V", "K277R", "S359T", "K431T"], "RT-p66": ["T107S", "I244V", "K277R", "S359T", "K431T"], "gp120": ["E78T", "K150R"], "gp41": ["E49Q", "E137V", "I325A", "C326W"], "nef": ["A33V", "I43V", "E155K"], "p24": ["E180D", "P207Q"], "p6": ["K42R", "N47S"], "pro": ["S63A"], "rev": ["V16C"], "tat": ["S62L"], "vpr": ["S93P"], "vpu": ["H74L", "-75N", "P76L", "-77G", "-78Y"]}, "labels": {"aa": "INT: K173R, K219N; RT-p51: T107S, I244V, K277R, S359T, K431T; RT-p66: T107S, I244V, K277R, S359T, K431T; gp120: E78T, K150R; gp41: E49Q, E137V, I325A, C326W; nef: A33V, I43V, E155K; p24: E180D, P207Q; p6: K42R, N47S; pro: S63A; rev: V16C; tat: S62L; vpr: S93P; vpu: H74L, -75N, P76L, -77G, -78Y"}}, "children": [{"name": "H_NODE_0000004", "node_attrs": {"div": 0.07584999999999999, "clade_membership": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["A571T", "C668-", "G686A", "A701G", "G707A", "G712A", "C749T", "A758G", "C1098G", "A1151G", "T1182C", "C1406T", "A1529G", "T1752C", "T1790C", "A1794G", "C2127A", "C2456G", "T2983A", "G3483A", "A3643G", "A3817G", "G4183A", "A4432C", "T4498C", "A4643C", "A4735G", "T4793C", "T4832C", "G4861A", "C4911A", "A4966G", "A4968G", "G4969T", "C4976A", "G5212A", "C5213G", "A5282T", "A5602T", "A5640G", "G5717A", "A5947G", "A6076G", "G6086A", "T6091C", "G6112A", "-6173A", "T6178A", "A6186C", "-6215A", "-6217G", "A6234C", "C6238T", "A6406C", "C6454T", "C6487T", "A6580C", "A6639C", "C6647G", "A6667T", "-6689A", "G6693A", "A6695T", "C6779G", "-6833A", "G6880A", "G6905A", "A6936G", "A6937G", "C6952T", "C6967T", "-6979C", "-6980A", "-6981T", "-6982G", "-6983C", "-6984C", "-6985A", "-6994A", "C7008A", "C7012T", "G7137T", "G7143A", "T7150C", "-7164A", "A7396G", "A7420G", "A8006G", "T8008G", "C8033G", "G8050C", "A8055G", "G8079T", "G8678A", "A8762G", "C8934A", "T8935A", "C8978A", "C9028A", "C9093T", "G9136A"], "RT-p51": ["T11K", "H121D"], "RT-p66": ["T11K", "H121D", "R463K"], "gp120": ["-112T", "K127T", "-241Q", "E262T", "N267T", "I281L", "Q309E", "G351R", "R428I", "G430E"], "gp41": ["D109N", "D129E", "N140T", "I235V", "L244V", "N251S", "R259L"], "nef": ["K155R", "L198K"], "p17": ["Y79F", "N111R", "S126N"], "p24": ["P123A"], "p6": ["P30L", "T39A"], "rev": ["D7A", "H53R", "S54A", "T62S", "A68P"], "tat": ["R53S", "P68S"], "vif": ["K50R", "R92K", "L109M", "H127R", "R128V"], "vpr": ["I60L"], "vpu": ["R37K"]}, "labels": {"aa": "RT-p51: T11K, H121D; RT-p66: T11K, H121D, R463K; gp120: -112T, K127T, -241Q, E262T, N267T, I281L, Q309E, G351R, R428I, G430E; gp41: D109N, D129E, N140T, I235V, L244V, N251S, R259L; nef: K155R, L198K; p17: Y79F, N111R, S126N; p24: P123A; p6: P30L, T39A; rev: D7A, H53R, S54A, T62S, A68P; tat: R53S, P68S; vif: K50R, R92K, L109M, H127R, R128V; vpr: I60L; vpu: R37K"}}, "children": [{"name": "KY392778", "node_attrs": {"div": 0.12244, "accession": "KY392778", "clade_membership": {"value": "H"}, "country": {"value": "CD"}, "date": {"value": 2001.0}, "Strain_name": {"value": "CG_0538_02_NGSID15"}, "LANL_subtype": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["C8T", "G51A", "A66C", "T95C", "A152C", "T227C", "A263T", "G279A", "T377G", "A417C", "A460G", "G495T", "A520G", "C561A", "A562C", "T567C", "T572C", "C587T", "C596T", "G607A", "A608C", "G644A", "A645G", "G650A", "A653G", "A654G", "C662T", "C669-", "A670-", "A675C", "A678G", "C681A", "A682C", "G683A", "C684G", "A685C", "G717A", "A752G", "G771C", "A774C", "G785A", "C788T", "A803G", "A820G", "G837A", "C875T", "T890C", "G891A", "C926T", "A968G", "G1019A", "C1060A", "A1124G", "A1157C", "A1193G", "G1199A", "A1217G", "G1268A", "A1329G", "A1343C", "A1370G", "A1450C", "G1476A", "C1481T", "A1500G", "A1526G", "G1543A", "G1562A", "A1661G", "G1664A", "T1676C", "A1715G", "C1730T", "G1742A", "T1864G", 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"Q338R", "R342G", "L345V"], "nef": ["A15T", "E24Q", "T48M", "A50G", "T51N", "A56T", "F85L", "E108D", "Y120F", "Q125H", "N157T", "N162S", "E176D", "R188Y", "F191Y"], "p17": ["D14E", "K28Q", "E42G", "A54S", "E62G", "K76T", "R91N", "D102E", "I104V", "I107V", "K114-", "T115A", "Q116T", "Q117A", "V128I"], "p2": ["N9T"], "p24": ["A14P", "I15L", "K30R", "V36I", "A54T", "M96I", "T110N", "T200A"], "p6": ["M21I", "S24P"], "p7": ["G4S", "I12V", "R26K"], "pro": ["N37S", "P39S", "A63S", "I64M"], "rev": ["K20R", "L22I", "A32T", "R50N", "G96E", "V97L", "S106Y", "S107P", "A108E"], "tat": ["C31S", "Q35E", "S61G", "L62V", "N67D", "S68N", "R78H", "*87Q"], "vif": ["E2A", "T20A", "Y27H", "Y30H", "I31V", "K33R", "K34R", "A35I", "G37E", "F39V", "R41K", "S46G", "D61E", "T67I", "H73Q", "R93K", "Q105H", "K122N", "S130R", "E134D", "K141N", "T159I", "H183R"], "vpr": ["H15Y", "T19A", "P37A", "H45Y", "Y50H", "T84I"], "vpu": ["I18L", "T24I", "V26A", "V34K", "K38A", "R47S", "E66G", "A80V", "L82M"]}, "labels": {"aa": "INT: N17C, V112M, A125V, D134G, I234V, I268L; RT-p51: I142V, K211G, P243A, A286T, R311K, K356R, M357V, I375V, V417I; RT-p66: I142V, K211G, P243A, A286T, R311K, K356R, M357V, I375V, V417I, K476R, K530R, V548I; gp120: S1N, A3T, E19D, A32G, T35K, K37Q, N52D, E69R, D71N, E74R, N102E, T104A, -105D, -106I, -107T, -109T, -111G, V133A, I137M, R138K, D139E, K143R, V144M, H145Q, R150K, D157S, T161-, E183D, N202D, T204D, T212K, Q241K, I243R, K247R, I249F, T262A, T269V, K277T, F289V, H302Y, T313M, H315Y, K316N, V317I, V318T, K323S, S347M, K361R, -368L, -372W, -373S, -375D, -376M, -377P, N378S, -381S, -382N, N414K, I415L, T416Q, I428V, E430N, G431A, -433M, N435A, -436A, -438F, R448K, V468I, K472R; gp41: Q108Y, D113N, R122K, Y132H, I222T, Q229P, D232T, V235A, L263S, G278S, L288I, Q290K, N302D, R327G, I329V, H331R, P333L, R335-, Q338R, R342G, L345V; nef: A15T, E24Q, T48M, A50G, T51N, A56T, F85L, E108D, Y120F, Q125H, N157T, N162S, E176D, R188Y, F191Y; p17: D14E, K28Q, E42G, A54S, E62G, K76T, R91N, D102E, I104V, I107V, K114-, T115A, Q116T, Q117A, V128I; p2: N9T; p24: A14P, I15L, K30R, V36I, A54T, M96I, T110N, T200A; p6: M21I, S24P; p7: G4S, I12V, R26K; pro: N37S, P39S, A63S, I64M; rev: K20R, L22I, A32T, R50N, G96E, V97L, S106Y, S107P, A108E; tat: C31S, Q35E, S61G, L62V, N67D, S68N, R78H, *87Q; vif: E2A, T20A, Y27H, Y30H, I31V, K33R, K34R, A35I, G37E, F39V, R41K, S46G, D61E, T67I, H73Q, R93K, Q105H, K122N, S130R, E134D, K141N, T159I, H183R; vpr: H15Y, T19A, P37A, H45Y, Y50H, T84I; vpu: I18L, T24I, V26A, V34K, K38A, R47S, E66G, A80V, L82M"}}}, {"name": "H_NODE_0000005", "node_attrs": {"div": 0.08171999999999999, "clade_membership": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["C537A", "C893T", "T1037C", "G1313A", "G1498A", "G1673A", "-1747C", "-1748C", "C1749T", "T1754-", "G2459A", "G3454A", "A3491G", "G3718A", "G4829A", "A5007C", "A5046G", "G5257A", "T5292C", "G5360A", "G5375A", "C5559T", "C5704T", "G5800-", "G5808-", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", 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rev: A15V, V97E, A108T, A114T; vif: K141Q, I154V; vpr: I63T"}}, "children": [{"name": "AF005496", "node_attrs": {"div": 0.11637999999999998, "accession": "AF005496", "clade_membership": {"value": "H"}, "country": {"value": "CF"}, "date": {"value": 1990.0}, "Strain_name": {"value": "056"}, "LANL_subtype": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["A204T", "C207T", "T227A", "G265A", "G278A", "G280-", "G301A", "A302T", "A303T", "A304T", "A305T", "G365C", "T396C", "G495C", "A512G", "C525A", "C561A", "A585G", "C586T", "A604G", "G607A", "G614T", "A617G", "A632G", "G641T", "-668T", "A690G", "G818A", "A932G", "T974C", "C978G", "G1016A", "T1064G", "C1235T", "C1292A", "T1334A", "G1452A", "G1455A", "C1456A", "A1457T", "G1458A", "C1492A", "A1500T", "T1511C", "G1589A", "G1697A", "-1746C", "C1751T", "-1754G", "C1755A", "C1756A", "A1758C", "C1761G", "G1764C", "C1831T", "A1903G", "A1915G", "A2200G", "A2215G", "G2224A", "T2236C", "A2241G", "A2265G", "C2296T", "T2383C", "C2464A", "G2470A", "A2601C", "A2612G", "A2629G", "G2728A", "C2822A", "G2912A", "G2913A", "G2914T", "G2925A", "C2960T", "G2972A", "G3035A", "A3084G", "A3099G", "A3124G", "C3133T", "G3188A", "A3217G", "G3221T", "A3295C", "G3334A", "G3419A", "A3449T", "C3475T", "A3484G", "T3496C", "A3574G", "T3602C", "T3625C", "A3761G", "A3772G", "C3823T", "A3839G", "G3859A", "T3970C", "A3979G", "A3986C", "C4058A", "T4075C", "A4076C", "A4078G", "G4091A", "A4109G", "G4111A", "A4141G", "A4195G", "T4282A", "G4293A", "A4565G", "G4622A", "T4674C", "A4684G", "A4717T", "G4766A", "T4769A", "A4787C", "C4803A", "C4820A", "G4856A", "A4858T", "C4883G", "G4986A", "A4988C", "A4993C", "C5006A", "T5016A", "T5027C", "C5034T", "G5036A", "A5048G", "C5062T", "C5180A", "A5191G", "C5214T", "T5248C", "A5268T", "T5293G", "C5351A", "C5397A", "A5431C", "T5482A", "C5508A", "G5543A", "A5544C", "G5545A", "G5560T", "C5578T", "C5584T", "A5603C", "T5604A", "G5605T", "T5606A", "-5608A", "-5609T", "-5610G", "-5611T", "-5612A", "A5626T", "A5644G", "G5650A", "A5665G", "G5668A", "G5699A", "G5700A", "A5711G", "T5731C", "A5746G", "T5788A", "T5789C", "-5791G", "C5792A", "C5793G", "C5797T", "-5799A", "-5800T", "T5801C", "G5803A", "-5806C", "-5808T", "-5812A", "-5819T", "T5826C", "G5864C", "G5896A", "A5911G", "C5989A", "C6026A", "A6031G", "A6045G", "G6065A", "A6073G", "A6118G", "G6121A", "A6172C", "-6174G", "-6175A", "A6178C", "T6184C", "A6185T", "T6193C", "A6195C", "-6200A", "-6201G", "-6202T", "T6210-", "-6218G", "A6221G", "A6222C", "A6228G", "A6229G", "A6263C", "T6328C", "A6338C", "C6406T", "T6436C", "T6469C", "C6482T", "C6483T", "C6499T", "A6525G", "G6526A", "G6578A", "T6590A", "T6637G", "T6643A", "G6647A", "A6649C", "C6655A", "A6664G", "A6679G", "A6684C", "A6714G", "G6773A", "A6774G", "A6781C", "A6818G", "A6822T", "T6829G", "T6849G", "T6850C", "A6856G", "T6860A", "C6885G", "-6956G", "-6957A", "-6958A", "-6959A", "-6960T", "-6961G", "-6962C", "-6963A", "-6964T", "-6975A", "-6977T", "T6981C", "G6982A", "C6983T", "-6996A", "A6997G", "-6998G", "-6999G", "T7003C", "-7004G", "-7005A", "-7006A", "-7009C", "A7065G", "A7088C", "C7101T", "A7102G", "G7152C", "A7154T", "A7157G", "A7158C", "T7159A", "T7162A", "-7166T", "-7167A", "A7219G", "G7256A", "G7271A", "T7306A", "T7323C", "A7366G", "A7455G", "T7486C", "G7487A", "A7513C", "A7533G", "T7624A", "G7628A", "A7629G", "T7636C", "G7660A", "G7668A", "A7744G", "A7782C", "A7799C", "A7931G", "G7942A", "T7968C", "A7977G", "C8009A", "G8061C", "C8062A", "G8098A", "G8158C", "G8173A", "T8176C", "A8207G", "A8252G", "A8262T", "G8329A", "C8331G", "T8332C", "T8369G", "A8372G", "T8374G", "C8382T", "G8385A", "G8414A", "C8419T", "T8462C", "C8477T", "G8490T", "C8500G", "G8597T", "A8655C", "A8663G", "G8666C", "G8787A", "A8805C", "C8832T", "T8843C", "T8847A", "A8851T", "A8870C", "A8872G", "G8894A", "C8906A", "A8922T", "A8924G", "A8932T", "G8933A", "T8947A", "T8949-", "A8950-", "C8951-", "G9016A", "T9040C", "C9073T", "C9180T"], "INT": ["M22V", "K71Q", "Q95K", "I101L", "G106S", "R173K", "K264E", "G283S"], "RT-p51": ["K49R", "N57S", "D123E", "E169A", "K173E", "I178M", "P243T", "G273N", "R277K", "V293I", "V314I", "Q330R", "D335G", "V365I", "A376S"], "RT-p66": ["K49R", "N57S", "D123E", "E169A", "K173E", "I178M", "P243T", "G273N", "R277K", "V293I", "V314I", "Q330R", "D335G", "V365I", "A376S", "V442I", "M452L", "I556V"], "gp120": ["E4Q", "L58M", "N64S", "D71N", "-105N", "-106V", "-107R", "-109N", "-111S", "T112N", "N113S", "-114T", "-116S", "-121M", "-122E", "-123A", "-124G", "I137L", "-162Q", "P210L", "K224R", "V242I", "S246T", "N261K", "E265N", "K277T", "Q287R", "E307R", "E309D", "R322G", "K323I", "F325L", "K329R", "I332S", "S336N", "I341M", "T344R", "-368E", "-369M", "S370H", "-372N", "-373Y", "-377S", "N379D", "-381K", "-382G", "-384E", "-385N", "Q404R", "T416M", "-433A", "N435A", "-436E", "-438Y", "V468I", "A473T"], "gp41": ["F7S", "Q51R", "V62I", "K77R", "N109S", "R122K", "N160T", "N166H", "I210V", "I222T", "E225G", "C253S", "N302D", "R317G", "E320V", "A343S"], "nef": ["S9R", "I10M", "V11G", "P14S", "A15T", "A26V", "A50S", "P53R", "E63D", "K105Q", "E108D", "D149N", "R155Q", "C163S", "I168M", "C169S", "Q170L", "E176D", "E177G", "F191L", "I194L", "E197V", "F202Y", "Y203-"], "p17": ["A54P", "L64I", "T84V", "Q90R", "R91K", "E93D", "R111S", "T119A"], "p2": ["A10T", "A11N", "A12T"], "p24": ["L83V", "D187E"], "p6": ["-26K", "K27Q", "Q28E", "E29Q", "S51L"], "p7": ["P9Q", "I12F"], "rev": ["E10T", "Y28C", "A32T", "A54E", "P72T", "D84N", "V104L", "V109I"], "tat": ["N7K", "K19Q", "L36M", "R56H", "G57R", "P70S", "R78H", "*87Q"], "vif": ["Y30H", "K33R", "Y44F", "D61E", "H73N", "D78E", "Q91L", "D99E", "S130R", "E134N", "Q136P", "N140K", "S144T", "T159I"], "vpr": ["L26I", "P37V", "E55V"], "vpu": ["-2Y", "I7L", "I13V", "A15T", "I20V", "V21I", "R31K", "K35R", "R47G", "V65M"]}, "labels": {"aa": "INT: M22V, K71Q, Q95K, I101L, G106S, R173K, K264E, G283S; RT-p51: K49R, N57S, D123E, E169A, K173E, I178M, P243T, G273N, R277K, V293I, V314I, Q330R, D335G, V365I, A376S; RT-p66: K49R, N57S, D123E, E169A, K173E, I178M, P243T, G273N, R277K, V293I, V314I, Q330R, D335G, V365I, A376S, V442I, M452L, I556V; gp120: E4Q, L58M, N64S, D71N, -105N, -106V, -107R, -109N, -111S, T112N, N113S, -114T, -116S, -121M, -122E, -123A, -124G, I137L, -162Q, P210L, K224R, V242I, S246T, N261K, E265N, K277T, Q287R, E307R, E309D, R322G, K323I, F325L, K329R, I332S, S336N, I341M, T344R, -368E, -369M, S370H, -372N, -373Y, -377S, N379D, -381K, -382G, -384E, -385N, Q404R, T416M, -433A, N435A, -436E, -438Y, V468I, A473T; gp41: F7S, Q51R, V62I, K77R, N109S, R122K, N160T, N166H, I210V, I222T, E225G, C253S, N302D, R317G, E320V, A343S; nef: S9R, I10M, V11G, P14S, A15T, A26V, A50S, P53R, E63D, K105Q, E108D, D149N, R155Q, C163S, I168M, C169S, Q170L, E176D, E177G, F191L, I194L, E197V, F202Y, Y203-; p17: A54P, L64I, T84V, Q90R, R91K, E93D, R111S, T119A; p2: A10T, A11N, A12T; p24: L83V, D187E; p6: -26K, K27Q, Q28E, E29Q, S51L; p7: P9Q, I12F; rev: E10T, Y28C, A32T, A54E, P72T, D84N, V104L, V109I; tat: N7K, K19Q, L36M, R56H, G57R, P70S, R78H, *87Q; vif: Y30H, K33R, Y44F, D61E, H73N, D78E, Q91L, D99E, S130R, E134N, Q136P, N140K, S144T, T159I; vpr: L26I, P37V, E55V; vpu: -2Y, I7L, I13V, A15T, I20V, V21I, R31K, K35R, R47G, V65M"}}}, {"name": "AF190128", "node_attrs": {"div": 0.11721999999999999, "accession": "AF190128", "clade_membership": {"value": "H"}, "country": {"value": "BE"}, "date": {"value": 1993.0}, "Strain_name": {"value": "VI997"}, "LANL_subtype": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["A369C", "A370G", "G378A", "G382T", "C435A", "G452A", "A492T", "G524A", "A529G", "G534T", "C576A", "T577C", "A578C", "A584G", "A601T", "A640G", "-668G", "G696A", "A706G", "G771C", "A815G", "A1046T", "G1098A", "C1099G", "C1175T", "C1178T", "T1271G", "A1307G", "G1476A", "C1517T", "A1607G", "T1646C", "A1733G", "-1746T", "C1755-", "C1756-", "A1793T", "G1804A", "G1819A", "C1914T", "A1920G", "G1978T", "G2059A", "G2134A", "A2154G", "A2182G", "C2211T", "A2212G", "C2485T", "C2575T", "G2630A", "C2644T", "A2695G", "A2727G", "A2755G", "A2818G", "T2890C", "A2969G", "G3025A", "A3096C", "G3142A", "C3171A", "A3183G", "G3264A", "C3266T", "T3308C", "G3337A", "A3386G", "T3436C", "G3477A", "A3490G", "T3497G", "G3505A", "A3511T", "A3637G", "G3664A", "A3727G", "T3793C", "A3807C", "T3850G", "G3916A", "A3937G", "T4009C", "G4031C", "C4072T", "G4131C", "G4145A", "A4189C", "G4219A", "A4243G", "G4252A", "C4432T", "C4645A", "G4693A", "A4694C", "G4695A", "T4701G", "A4721C", "A4725C", "C4781T", "C4890T", "T4912C", "G4913C", "A4950G", "A4951G", "T4967A", "A4976T", "A5024G", "A5048T", "G5086A", "A5103G", "G5157A", "A5187G", "T5197C", "C5214A", "A5215C", "A5268G", "T5275C", "A5278G", "A5336T", "C5356T", "T5399A", "G5423A", "G5437C", "A5461C", "T5467A", "A5471T", "A5537G", "G5546C", "T5553C", "C5579A", "A5601G", "T5602C", "T5620A", "G5640C", "T5670A", "A5703G", "G5737C", "A5739G", "A5745C", "G5747T", "A5752G", "G5783A", "A5784G", "C5787A", "-5791T", "G5794A", "A5795C", "C5797A", "T5801-", "C5802-", "G5803-", "A5804-", "G5805-", "T5807-", "-5811G", "-5812G", "-5819G", "A5831C", "C5833T", "C5851T", "G5853A", "A5865G", "A5957C", "A6009G", "A6030C", "A6061C", "C6067T", "T6085G", "A6158G", "C6165G", "G6170A", "-6174C", "-6175T", "A6177G", "A6182G", "C6183A", "A6195G", "T6196C", "-6208A", "-6209C", "-6211G", "-6212T", "-6213C", "-6214A", "-6218C", "A6219C", "G6220A", "A6221C", "A6222T", "G6225C", "C6230T", "A6259T", "A6282G", "A6316G", "A6327G", "T6343C", "T6358C", "G6394A", "C6397T", "A6403T", "T6409C", "C6412T", "C6446T", "A6466G", "A6573G", "A6635G", "C6639G", "A6640T", "G6644A", "A6686G", "-6697C", "A6703-", "A6712G", "C6736T", "G6743A", "T6745C", "A6767G", "A6776G", "C6777A", "A6778G", "G6779A", "C6799A", "G6803A", "T6807C", "A6820T", "C6824T", "-6830G", "-6831T", "-6832C", "C6835T", "A6836-", "A6837-", "T6838-", "A6845T", "T6860C", "A6875C", "T6901C", "-6968G", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6975T", "-6977A", "C6979T", "A6995G", "-6996G", "-6998A", "-6999A", "A7007-", "A7008-", "C7045T", "C7078T", "C7087T", "A7095G", "C7124T", "A7129C", "T7130C", "A7135T", "A7136T", "T7137A", "G7144A", "G7146A", "C7150G", "G7153A", "C7155A", "-7166G", "-7167T", "A7268G", "A7348T", "G7438A", "T7462C", "C7561T", "G7608C", "A7626T", "A7629C", "A7676G", "G7677A", "A7692T", "G7702A", "G7712C", "A7733C", "C7747T", "C7770A", "A7771C", "C7775T", "G7790A", "A7791G", "T7796A", "T7801C", "G7831A", "G7842C", "A7846G", "T7852G", "A7886G", "A7887G", "A7998G", "A8032G", "G8033A", "T8091C", "G8105A", "G8107A", "G8137A", "A8143G", "T8155C", "C8232T", "G8254A", "A8288G", "T8321C", "C8331T", "A8388G", "G8402A", "G8412C", "A8426T", "G8441A", "T8450C", "T8462A", "C8506T", "C8507T", "A8533C", "A8537G", "T8558C", "G8590C", "T8595C", "T8609C", "A8693G", "C8702T", "C8711T", "A8742G", "T8746A", "T8747C", "C8768T", "G8778A", "A8806G", "A8829T", "C8838T", "G8846A", "T8867C", "A8874G", "A8912C", "G8915C", "T8923C", "G8936A", "C8964T", "-8974T", "A8979C", "T9014C", "G9030T", "A9041T", "T9084G", "C9121T", "A9131G", "T9134C", "T9176G", "T9179G", "T9181A"], "INT": ["E11A", "D25E", "A86P", "V112M", "S119T", "A124T", "E138D"], "RT-p51": ["K20R", "T39M", "V179I", "K211R", "I292V", "Q334P", "T359N", "N363S", "R390K", "Y405H", "W414*", "T431A"], "RT-p66": ["K20R", "T39M", "V179I", "K211R", "I292V", "Q334P", "T359N", "N363S", "R390K", "Y405H", "W414*", "T431A", "M452I", "R461K", "S468A"], "gp120": ["E4G", "T35P", "N52S", "E59A", "E69D", "H77Q", "N102D", "T104S", "-109I", "-111R", "-114S", "K143R", "N158E", "N159T", "-162K", "E183D", "E240G", "N261D", "T262S", "V264I", "S278G", "L281F", "D297N", "I305V", "T308E", "E309K", "H315Q", "V317I", "V318A", "R322S", "H324Y", "-326V", "N328R", "K329-", "I331L", "S336H", "I341L", "-368T", "S370-", "T371-", "T374-", "-376G", "-377D", "N379I", "T380N", "-381M", "-382P", "-384D", "-385T", "Q412K", "N414S", "I428Y", "G431D", "N432K", "-433G", "S434N", "-436D", "-438V", "K472E"], "gp41": ["S102T", "Q108L", "N109A", "S125D", "E130V", "V137L", "K144Q", "A156D", "D163S", "S165T", "M176I", "G180A", "N195G", "D232G", "V244I", "L263S", "V268I", "A310V", "I329V", "F340L", "A343I"], "nef": ["I16V", "M20I", "E24Q", "E28D", "A55V", "G83A", "F85L", "R134G", "F135Y", "V146I", "H166Y", "R178G", "I194T"], "p17": ["K12R", "A15T", "W16L", "L34I", "T53S", "Q65R", "A67S", "L81T", "H89L", "D102G", "D121N", "K124R"], "p24": ["A14P", "A123S", "D180E"], "p6": ["P23S", "L38F", "R42K", "S47N"], "p7": ["G4S"], "pro": ["P39L", "K41R", "E60D"], "rev": ["S8G", "E11Q", "L13P", "L22I", "S62D", "S86N", "E87K", "E97K", "S99G", "S103P"], "tat": ["L8Q", "S16N", "A21P", "K29Q", "C31S", "Y32F", "Q54R", "G57A", "L62V", "S68H"], "vif": ["T20K", "R36N", "G37R", "F39V", "E45D", "T47P", "M109T", "K122G", "R167K", "R173G", "G191R"], "vpr": ["W18*", "N28S", "P37D", "E55G", "Q77H", "T84I"], "vpu": ["L5I", "E44Q", "R47I", "R49G", "G59E", "K63T", "L64M", "M67R", "N75T", "L76F"]}, "labels": {"aa": "INT: E11A, D25E, A86P, V112M, S119T, A124T, E138D; RT-p51: K20R, T39M, V179I, K211R, I292V, Q334P, T359N, N363S, R390K, Y405H, W414*, T431A; RT-p66: K20R, T39M, V179I, K211R, I292V, Q334P, T359N, N363S, R390K, Y405H, W414*, T431A, M452I, R461K, S468A; gp120: E4G, T35P, N52S, E59A, E69D, H77Q, N102D, T104S, -109I, -111R, -114S, K143R, N158E, N159T, -162K, E183D, E240G, N261D, T262S, V264I, S278G, L281F, D297N, I305V, T308E, E309K, H315Q, V317I, V318A, R322S, H324Y, -326V, N328R, K329-, I331L, S336H, I341L, -368T, S370-, T371-, T374-, -376G, -377D, N379I, T380N, -381M, -382P, -384D, -385T, Q412K, N414S, I428Y, G431D, N432K, -433G, S434N, -436D, -438V, K472E; gp41: S102T, Q108L, N109A, S125D, E130V, V137L, K144Q, A156D, D163S, S165T, M176I, G180A, N195G, D232G, V244I, L263S, V268I, A310V, I329V, F340L, A343I; nef: I16V, M20I, E24Q, E28D, A55V, G83A, F85L, R134G, F135Y, V146I, H166Y, R178G, I194T; p17: K12R, A15T, W16L, L34I, T53S, Q65R, A67S, L81T, H89L, D102G, D121N, K124R; p24: A14P, A123S, D180E; p6: P23S, L38F, R42K, S47N; p7: G4S; pro: P39L, K41R, E60D; rev: S8G, E11Q, L13P, L22I, S62D, S86N, E87K, E97K, S99G, S103P; tat: L8Q, S16N, A21P, K29Q, C31S, Y32F, Q54R, G57A, L62V, S68H; vif: T20K, R36N, G37R, F39V, E45D, T47P, M109T, K122G, R167K, R173G, G191R; vpr: W18*, N28S, P37D, E55G, Q77H, T84I; vpu: L5I, E44Q, R47I, R49G, G59E, K63T, L64M, M67R, N75T, L76F"}}}]}]}, {"name": "H_NODE_0000006", "node_attrs": {"div": 0.07060999999999999, "clade_membership": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["A516C", "A618C", "A665G", "G667A", "A1097C", "C2831T", "T3844C", "G4693A", "G4888A", "C5019T", "G5560T", "T5788A", "C5862T", "C5920T", "G5956C", "C6165G", "-6198G", "-6199T", "-6200A", "-6202T", "-6203G", "-6204C", "-6205C", "-6206A", "-6214A", "-6218G", "G6224C", "C6654A", "T6793C", "C6874T", "C6938T", "C6966-", "-6994T", "-7004A", "-7006C", "C7171-", "G7777A", "A8029G", "C8044G", "C8218T", "C8221T", "C8494A", "T8923G"], "gp120": ["A2T", "A3V", "-105E", "L126-", "N159D", "E265Q"], "gp41": ["D247E"], "nef": ["T51N", "I194R"], "p17": ["D102G"], "vif": ["R36K", "G37K", "G101D"]}, "labels": {"aa": "gp120: A2T, A3V, -105E, L126-, N159D, E265Q; gp41: D247E; nef: T51N, I194R; p17: D102G; vif: R36K, G37K, G101D"}}, "children": [{"name": "H_NODE_0000007", "node_attrs": {"div": 0.07876, "clade_membership": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["C510A", "C525A", "C897T", "T902C", "T1037C", "C1060A", "C1137T", "C1492A", "T1790C", "G1846A", "A2241G", "A2332G", "G2509A", "G2704A", "G2725A", "C2749T", "T2908C", "G3188A", "G3391A", "A3481G", "G3846A", "C4428T", "C4534T", "G4696A", "C4914T", "G4982T", "G5094A", "T5095C", "C5147T", "T5197C", "T5228C", "C5237T", "A5268G", "A5282T", "C5535A", "A5547G", "C5559T", "C5569A", "G5668A", "C5679T", "A5720G", "A5734C", "-5799T", "T5807-", "C5974A", "C6046T", "-6175A", "A6186G", "A6219G", "-6226A", "A6475G", "A6490G", "C6632T", "C6641T", "C6797T", "T6808C", "C6810A", "G6935A", "A6965-", "C6967-", "-6977G", "-6981C", "-6982C", "G7040A", "C7096T", "C7124T", "C7141T", "T7624C", "T7666A", "A7858G", "G7868A", "G8010C", "C8030A", "T8167C", "T8279G", "C8291A", "T8375G", "G8385A", "C8386G", "G8465A", "C8491A", "G8516A", "G8555A", "C8832T", "G8888A", "G8894A", "G8915T", "C8928A", "A8977G", "C8978A", "A8979C"], "INT": ["S24N", "S218L"], "RT-p51": ["K49R", "V365I"], "RT-p66": ["K49R", "V365I", "M452I"], "gp120": ["L260F", "P263S", "A291T", "V396I"], "gp41": ["D121E", "A189T", "R236P", "W326G", "L330I"], "nef": ["A15S", "Q35R", "A50D", "F85L", "L198Q"], "p17": ["Q59K", "I61L", "L64I", "K95Q"], "p24": ["T110N"], "p7": ["P9Q"], "rev": ["E11G", "A15V", "S107P"], "tat": ["H65N"], "vif": ["H110Y", "R132S", "V170T"], "vpr": ["H15Y", "H45Y", "I60L"], "vpu": ["V21I", "K38R", "I43L"]}, "labels": {"aa": "INT: S24N, S218L; RT-p51: K49R, V365I; RT-p66: K49R, V365I, M452I; gp120: L260F, P263S, A291T, V396I; gp41: D121E, A189T, R236P, W326G, L330I; nef: A15S, Q35R, A50D, F85L, L198Q; p17: Q59K, I61L, L64I, K95Q; p24: T110N; p7: P9Q; rev: E11G, A15V, S107P; tat: H65N; vif: H110Y, R132S, V170T; vpr: H15Y, H45Y, I60L; vpu: V21I, K38R, I43L"}}, "children": [{"name": "FJ711703", "node_attrs": {"div": 0.11809, "accession": "FJ711703", "clade_membership": {"value": "H"}, "country": {"value": "GB"}, "date": {"value": 2000.0}, "Strain_name": {"value": "00GBAC4001"}, "LANL_subtype": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["T94C", "A256-", "A461C", "T473C", "G481A", "A500T", "A520G", "A540C", "C558A", "C561A", "A566G", "A571T", "A585G", "C586T", "C596T", "A605G", "G607A", "C623T", "A628G", "G629T", "G639A", "G641T", "A645G", "G648A", "A653G", "A659G", "A676C", "A697G", "A704G", "G717A", "G891A", "A903T", "A920G", "C978A", "T979C", "C1115T", "T1271C", "G1313A", "G1339A", "A1404G", "C1439T", "G1443A", "A1445G", "G1452A", "C1453T", "A1454G", "G1455A", "C1456A", "A1457T", "G1458A", "A1467G", "T1501C", "C1523T", "C1541A", "T1547C", "A1586G", "T1628G", "T1646C", "T1676C", "G1697A", "G1718A", "A1719T", "A1733G", "C1745A", "T1752C", "C1767A", "C1775A", "A1855G", "G1942A", "T1954C", "A2176G", "C2281T", "T2369C", "T2383C", "A2404C", "T2414A", "C2456T", "G2470A", "T2499C", "G2580A", "A2611G", "A2617G", "A2629G", "C2822A", "G2950A", "A2956G", "C2960T", "G2972A", "A2985C", "C3006A", "A3043G", "A3091G", "C3100A", "A3136G", "T3139C", "G3142A", "A3193G", "G3221T", "C3222G", "G3292A", "A3316G", "A3322G", "A3361G", "C3399T", "A3456G", "G3483A", "T3550C", "T3559C", "T3566C", "G3583A", "C3610T", "A3655G", "A3670G", "G3718A", "G3787A", "A3808G", "G3834A", "T3865A", "G3925A", "T3943C", "T3994A", "C4042T", "A4105G", "G4111A", "C4146G", "A4176G", "A4178G", "G4293A", "T4412C", "A4643T", "C4667T", "T4674C", "A4694G", "A4697T", "A4717T", "C4757T", "T4769A", "C4786T", "T4793C", "C4803A", "C4898T", "T4916C", "G4923A", "T4925C", "A4974T", "G4975A", "C4976T", "G4995A", "A5046G", "G5049A", "T5170G", "G5176A", "A5187G", "A5210C", "G5212T", "C5213G", "T5224C", "T5263C", "G5267A", "T5286C", "A5305G", "T5313C", "T5327C", "G5363A", "C5397A", "G5427A", "T5430C", "A5446G", "A5447G", "T5448C", "G5463T", "A5499G", "A5557G", "A5575G", "T5599C", "T5616C", "A5640G", "T5653G", "T5654G", "A5659T", "G5662T", "C5663G", "C5664T", "T5670A", "A5689T", "A5710C", "G5717A", "G5718A", "C5787A", "A5788C", "-5791T", "G5794A", "A5795C", "C5802T", "-5806C", "-5807G", "-5809G", "-5810G", "-5811G", "C5851G", "G5858A", "T5862G", "A5947G", "G5954A", "A5955G", "G5965A", "C6004T", "A6009G", "G6065A", "A6076C", "C6087A", "C6097T", "A6158G", "C6160A", "A6164G", "T6169A", "-6173G", "-6174G", "T6181G", "T6187C", "C6190T", "-6201G", "-6207G", "-6208C", "-6209C", "-6211A", "-6212G", "-6213A", "-6217G", "A6223C", "C6224A", "G6227A", "A6229T", "C6230-", "A6234C", "T6261C", "A6268G", "A6273G", "C6278A", "T6289G", "C6305A", "G6323A", "A6329G", "T6331A", "A6333C", "C6336A", "T6337C", "A6339G", "T6395A", "C6412A", "T6418C", "A6553G", "A6573G", "A6574G", "C6619T", "A6649G", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6726T", "C6736A", "G6743A", "T6745C", "A6774G", "G6802T", "A6811C", "A6823G", "A6834-", "C6835-", "A6854G", "C6862T", "A6887T", "G6894C", "A6936G", "-6956A", "-6957A", "-6958C", "-6971A", "-6972G", "-6973C", "-6975A", "-6979T", "-6980A", "-6983G", "-6984G", "-6985G", "A6989G", "A6990G", "A6995G", "-6996A", "A6997T", "A7000-", "-7005G", "-7009T", "G7026A", "C7045T", "A7088C", "T7138G", "G7139T", "G7143T", "G7144A", "G7146A", "A7151G", "G7153T", "T7156C", "A7161T", "-7164C", "T7165C", "T7168-", "A7169-", "C7170-", "T7172C", "A7238C", "G7256A", "T7306A", "T7400C", "G7459A", "T7489A", "C7625T", "G7627T", "C7642T", "A7676G", "G7677A", "G7690T", "G7712A", "G7717A", "C7722A", "G7754T", "G7769T", "T7774C", "T7801C", "A7832G", "G7835A", "T7843G", "G7883A", "A7891T", "T7918G", "T7932C", "C7940G", "G7946A", "A7992G", "T8007C", "A8019G", "G8029C", "C8031T", "G8042C", "C8051T", "T8164C", "A8204G", "C8232T", "A8264C", "A8353G", "G8378A", "T8387A", "G8402A", "A8408C", "G8436C", "G8441A", "T8485C", "A8494G", "T8495G", "G8531A", "G8534A", "A8537G", "T8609C", "T8636A", "T8640C", "A8643G", "G8717T", "C8720T", "A8740T", "T8746A", "A8754T", "C8755G", "G8875A", "A8885G", "A8886G", "A8893G", "G8905A", "T8935A", "G8936A", "A8967T", "G8981C", "C8985A", "T8986G", "T8987A", "C8990T", "C8992A", "G8994T", "-8997G", "G9006C", "A9009-", "C9028T", "C9073T"], "INT": ["R20K", "M50I", "V112I", "A124G", "D134G", "I135V", "R173K", "N219K"], "RT-p51": ["K103N", "S107T", "H121Y", "I135T", "S162N", "I178M", "P243T", "V293I", "K297T", "A304E", "D335E", "A376C", "A435V"], "RT-p66": ["K103N", "S107T", "H121Y", "I135T", "S162N", "I178M", "P243T", "V293I", "K297T", "A304E", "D335E", "A376C", "A435V", "K454R", "R463K"], "gp120": ["V3G", "E34S", "N52S", "D71N", "E74D", "T78E", "N102E", "T104G", "-106V", "-107G", "-109K", "-111S", "-114S", "-115N", "-116S", "-117S", "-118A", "-119S", "-120L", "K127T", "V136A", "K140R", "Q142K", "H145Q", "L151I", "D157-", "T160E", "-162L", "S181T", "E240G", "-241Q", "S278G", "Y290V", "T292G", "G293E", "D294V", "D297N", "E307G", "H315Y", "K316N", "T319N", "N327-", "K334E", "T345S", "S347T", "K361R", "-368N", "T374-", "N378-", "N379-", "T380-", "R391K", "R428L", "G430R", "G431Y", "N432V", "-433D", "S434N", "N435G", "-436T", "-438V", "F440L", "K462Q", "V468I"], "gp41": ["Q108Y", "S125D", "V137I", "A151S", "A156S", "I177V", "V178I", "V194I", "R196S", "I210T", "P213A", "G215R", "D230G", "I235T", "N239S", "L242F", "P243I", "E247Q", "R250W", "I301V", "A310V", "I321L"], "nef": ["K4R", "S15R", "M20I", "A32P", "N51R", "D98E", "I101V", "Q125H", "E133V", "F135Y", "T138C", "C163S", "I168M", "R178K", "M182V", "K184R", "R188H"], "p17": ["E42D", "G49D", "E55D", "E62G", "K69Q", "L75I", "Y79F", "T84V", "R91K", "K98S", "G102N", "I104V", "E105K", "K114T", "V128I"], "p2": ["V7M", "A10M", "A11N", "A12T"], "p24": ["A54T", "T58S", "L83T", "R203K", "S225G"], "p6": ["S14C", "S24P", "P30M", "D32E"], "p7": ["M1V", "I12T"], "rev": ["P31R", "G33E", "T61H", "G65A", "R66G", "A68V", "S106P"], "tat": ["N7K", "N24G", "K29N", "S61G", "N67D", "S75P"], "vif": ["Y30H", "K37D", "Y44F", "D61E", "T67I", "H73N", "D113N", "S130Y", "A137T", "I154V", "A155T"], "vpr": ["N28S", "P37A", "E55R", "I61T", "I70T"], "vpu": ["F16G", "I18L", "A19C", "I28L", "K35Q", "R37K", "K63T", "M67R", "L82V"]}, "labels": {"aa": "INT: R20K, M50I, V112I, A124G, D134G, I135V, R173K, N219K; RT-p51: K103N, S107T, H121Y, I135T, S162N, I178M, P243T, V293I, K297T, A304E, D335E, A376C, A435V; RT-p66: K103N, S107T, H121Y, I135T, S162N, I178M, P243T, V293I, K297T, A304E, D335E, A376C, A435V, K454R, R463K; gp120: V3G, E34S, N52S, D71N, E74D, T78E, N102E, T104G, -106V, -107G, -109K, -111S, -114S, -115N, -116S, -117S, -118A, -119S, -120L, K127T, V136A, K140R, Q142K, H145Q, L151I, D157-, T160E, -162L, S181T, E240G, -241Q, S278G, Y290V, T292G, G293E, D294V, D297N, E307G, H315Y, K316N, T319N, N327-, K334E, T345S, S347T, K361R, -368N, T374-, N378-, N379-, T380-, R391K, R428L, G430R, G431Y, N432V, -433D, S434N, N435G, -436T, -438V, F440L, K462Q, V468I; gp41: Q108Y, S125D, V137I, A151S, A156S, I177V, V178I, V194I, R196S, I210T, P213A, G215R, D230G, I235T, N239S, L242F, P243I, E247Q, R250W, I301V, A310V, I321L; nef: K4R, S15R, M20I, A32P, N51R, D98E, I101V, Q125H, E133V, F135Y, T138C, C163S, I168M, R178K, M182V, K184R, R188H; p17: E42D, G49D, E55D, E62G, K69Q, L75I, Y79F, T84V, R91K, K98S, G102N, I104V, E105K, K114T, V128I; p2: V7M, A10M, A11N, A12T; p24: A54T, T58S, L83T, R203K, S225G; p6: S14C, S24P, P30M, D32E; p7: M1V, I12T; rev: P31R, G33E, T61H, G65A, R66G, A68V, S106P; tat: N7K, N24G, K29N, S61G, N67D, S75P; vif: Y30H, K37D, Y44F, D61E, T67I, H73N, D113N, S130Y, A137T, I154V, A155T; vpr: N28S, P37A, E55R, I61T, I70T; vpu: F16G, I18L, A19C, I28L, K35Q, R37K, K63T, M67R, L82V"}}}, {"name": "KU168279", "node_attrs": {"div": 0.11682999999999999, "accession": "KU168279", "clade_membership": {"value": "H"}, "country": {"value": "CF"}, "date": {"value": 2002.0}, "Strain_name": {"value": "LA25LeMi"}, "LANL_subtype": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["A66C", "A67T", "G92A", "T153A", "T154A", "T156-", "A224G", "T227A", "G278A", "G354A", "A388G", "A417C", "C471A", "T473A", "A549T", "T567A", "G579A", "G614T", "G629A", "A640G", "G641A", "C662T", "A678G", "A690G", "G693-", "C694-", "T695-", "G696-", "A697-", "T698-", "A699-", "A700-", "A701-", "T731C", "A740G", "C749T", "A759C", "T760C", "T782C", "A803G", "G818A", "T858C", "C884T", "A941G", "T1004C", "A1034G", "G1109A", "C1118T", "A1242T", "C1243G", "A1263T", "G1298A", "T1359A", "A1400G", "A1450C", "A1474G", "C1481T", "A1496G", "G1588A", "C1692A", "G1766A", "C1767T", "T1768C", "A1771G", "C1782-", "C1783-", "-1785T", "-1786C", "A1793G", "G1852A", "A1870G", "A1990G", "C1996T", "T2080C", "G2224A", "T2347C", "C2353T", "C2356T", "A2398G", "G2459A", "A2512T", "T2527C", "A2563T", "A2592C", "T2635C", "A2686G", "C2715A", "T2716G", "G2728A", "A2755G", "A2887G", "A2919G", "A2929C", "A2938G", "C2968T", "G2989A", "G3019A", "G3029A", "A3030C", "T3059G", "A3099G", "A3116G", "C3133T", "A3217G", "C3266T", "G3427A", "G3439A", "G3454A", "A3491G", "T3496C", "T3497A", "G3505A", "T3544C", "A3643G", "G3680C", "G3685A", "T3695G", "A3835G", "A3910G", "A3964G", "G4081A", "A4109G", "G4145A", "C4149T", "G4175A", "G4267A", "A4303G", "A4376G", "T4405C", "A4432T", "A4474T", "A4642G", "T4678A", "T4679G", "A4692C", "G4695A", "A4697G", "T4761G", "T4769C", "T4772C", "C4781T", "A4838T", "G4856A", "G4949A", "A4950C", "A4956T", "A5015C", "A5059G", "A5065G", "A5087C", "C5116A", "A5136C", "G5140A", "A5155G", "G5167A", "G5179A", "G5200A", "A5285G", "G5296A", "C5356T", "C5382A", "T5391C", "C5397T", "T5399A", "A5471T", "T5482G", "G5538A", "A5565G", "G5566A", "A5574G", "C5579T", "A5581G", "C5584T", "A5601C", "A5602T", "A5619C", "G5623A", "G5624C", "A5625C", "C5663T", "G5706A", "C5727T", "A5733G", "T5789C", "C5792G", "C5793A", "A5795G", "C5797A", "G5803C", "G5805C", "-5809C", "-5810T", "-5811T", "-5812G", "-5813T", "-5814G", 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"A125V", "D134N", "I201V"], "RT-p51": ["E122K", "K166T", "A207E", "K275R", "Q278H", "E312T", "S322A", "D335G", "I341V"], "RT-p66": ["E122K", "K166T", "A207E", "K275R", "Q278H", "E312T", "S322A", "D335G", "I341V", "I466V", "S468T", "E529Q", "S534A"], "gp120": ["S1N", "T2V", "E4G", "K31R", "T35P", "K37M", "E69K", "T78A", "E105D", "-106G", "-107E", "N108Q", "T110-", "N113-", "-126L", "L147V", "V153I", "T161K", "T212M", "K224R", "K247E", "T253A", "T269S", "K277Q", "I279V", "F289I", "T308R", "Q309D", "N311E", "T313A", "H315S", "T319Q", "R322K", "K334R", "I341L", "G351R", "-368D", "S370K", "-372S", "-373S", "-381M", "N397K", "Q412S", "N414D", "V418I", "R428N", "G430E", "-433M", "N435A", "-436E", "-438F", "G443V", "D446E"], "gp41": ["I24L", "R46K", "D113N", "D129G", "V137D", "N140T", "S165T", "V187F", "N212S", "D217G", "G221R", "E224G", "V238A", "P243R", "R259L", "L274Q", "N287S", "N298K", "F340L", "A343T"], "nef": ["K4N", "I16V", "T48M", "K104R", "V114I", "N161T", "M182I", "R192T", "R194T", "Q198R"], "p17": ["V7I", "K18R", "K28Q", "L46I", "T72S", "K76Q", "L78I", "V82I", "E93D", "T115A", "T119A", "A120E", "D121K", "K122D", "E123S", "D125-", "S126-", "K127-"], "p2": ["N9T"], "p24": ["M10P", "T171C", "T178S", "S210T"], "p6": ["P5T", "P30S", "K31R", "P35S"], "p7": ["K3R", "R41K"], "pro": ["I64M"], "rev": ["S8N", "K17R", "K20R", "R39K", "T61E", "L64M", "E87K", "I102V", "S103P", "A114V", "*117E"], "tat": ["D2E", "L8Q", "Y32F", "L36V", "D64N", "P68L", "I69V", "P70S", "T77A", "T82A"], "vif": ["N19R", "I31K", "K36Q", "L59V", "K122Q", "I124L", "K158R", "K160R", "R167S", "P177H", "G185E", "N190S"], "vpr": ["Q11P", "E55G", "I61V", "T84I", "P93T", "S96P"], "vpu": ["G6T", "A19V", "E60D", "L61T", "S62-", "M67-", "G68-", "-69V", "-70E", "-71R", "-72G", "H73Q"]}, "labels": {"aa": "INT: A124T, A125V, D134N, I201V; RT-p51: E122K, K166T, A207E, K275R, Q278H, E312T, S322A, D335G, I341V; RT-p66: E122K, K166T, A207E, K275R, Q278H, E312T, S322A, D335G, I341V, I466V, S468T, E529Q, S534A; gp120: S1N, T2V, E4G, K31R, T35P, K37M, E69K, T78A, E105D, -106G, -107E, N108Q, T110-, N113-, -126L, L147V, V153I, T161K, T212M, K224R, K247E, T253A, T269S, K277Q, I279V, F289I, T308R, Q309D, N311E, T313A, H315S, T319Q, R322K, K334R, I341L, G351R, -368D, S370K, -372S, -373S, -381M, N397K, Q412S, N414D, V418I, R428N, G430E, -433M, N435A, -436E, -438F, G443V, D446E; gp41: I24L, R46K, D113N, D129G, V137D, N140T, S165T, V187F, N212S, D217G, G221R, E224G, V238A, P243R, R259L, L274Q, N287S, N298K, F340L, A343T; nef: K4N, I16V, T48M, K104R, V114I, N161T, M182I, R192T, R194T, Q198R; p17: V7I, K18R, K28Q, L46I, T72S, K76Q, L78I, V82I, E93D, T115A, T119A, A120E, D121K, K122D, E123S, D125-, S126-, K127-; p2: N9T; p24: M10P, T171C, T178S, S210T; p6: P5T, P30S, K31R, P35S; p7: K3R, R41K; pro: I64M; rev: S8N, K17R, K20R, R39K, T61E, L64M, E87K, I102V, S103P, A114V, *117E; tat: D2E, L8Q, Y32F, L36V, D64N, P68L, I69V, P70S, T77A, T82A; vif: N19R, I31K, K36Q, L59V, K122Q, I124L, K158R, K160R, R167S, P177H, G185E, N190S; vpr: Q11P, E55G, I61V, T84I, P93T, S96P; vpu: G6T, A19V, E60D, L61T, S62-, M67-, G68-, -69V, -70E, -71R, -72G, H73Q"}}}]}, {"name": "H_NODE_0000008", "node_attrs": {"div": 0.08073, "clade_membership": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["T213C", "A437G", "A640G", "A690G", "C773A", "T1280C", "G1562A", "A1587C", "G1588A", "T1598C", "A1618G", "G1619A", "T1679C", "A1759G", "G1772A", "A1776C", "A1855G", "G1857A", "A1903C", "G1942A", "T2017A", "T2365A", "A2629G", "G3027A", "T3566C", "T3567C", "C3763T", "G3806C", "A3825G", "G3989A", "A4652C", "G4695A", "T4761G", "C4911T", "A4937C", "C4955T", "G5090A", "G5185A", "A5187G", "C5221T", "C5225G", "A5227C", "T5399A", "A5432G", "G5538A", "A5574G", "T5684C", "T5789C", "-5791G", "C5792A", "C5793G", "C5797T", "-5799A", "G5800T", "T5801C", "G5803A", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5826C", "A5865G", "G6043A", "G6086A", "T6181A", "-6209A", "-6215G", "G6277T", "A6283G", "C6305G", "T6460G", "C6465A", "A6525G", "C6575-", "A6668G", "A6669G", "-6689A", "C6758T", "T6860C", "T6863G", "T6932A", "T6949C", "-6956A", "-6958C", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964C", "-6966G", "-6968T", "-6969A", "-6970T", "-6971A", "-6973C", "T6988C", "C6993A", "G7026A", "A7042G", "A7161T", "C7264A", "A7372T", "A7626T", "T7666C", "G7677A", "G7690T", "T7852C", "C7941A", "A8014G", "A8172T", "A8208G", "G8409A", "G8446A", "G8531A", "G8534A", "A8537G", "G8861A", "G8868C", "A8869C", "C8906A", "T8913C", "C9073T"], "INT": ["E11Q", "N17S", "V72I"], "RT-p51": ["R311K"], "RT-p66": ["R311K", "L491P"], "gp120": ["E4G", "E34D", "T104S", "L151V", "K224R", "N272G", "H280R", "H302Y", "S336P", "S337A", "S360T", "N379S", "R391K", "-436V"], "gp41": ["Q108L", "S125N", "P213Q", "Q290L", "N302S"], "nef": ["A23T", "T48I", "C163S", "I168M", "M173I", "E176P", "F191L"], "p17": ["K76Q", "T119A"], "p6": ["M21I"], "p7": ["R41Q", "E51G"], "pro": ["R20K", "E35D"], "rev": ["K20R", "S56G", "T61A", "R66G"], "tat": ["L8Q", "K19R", "R78S"], "vif": ["N19K", "K22N", "L59V", "E117D"], "vpr": ["N28S"], "vpu": ["V26A"]}, "labels": {"aa": "INT: E11Q, N17S, V72I; RT-p51: R311K; RT-p66: R311K, L491P; gp120: E4G, E34D, T104S, L151V, K224R, N272G, H280R, H302Y, S336P, S337A, S360T, N379S, R391K, -436V; gp41: Q108L, S125N, P213Q, Q290L, N302S; nef: A23T, T48I, C163S, I168M, M173I, E176P, F191L; p17: K76Q, T119A; p6: M21I; p7: R41Q, E51G; pro: R20K, E35D; rev: K20R, S56G, T61A, R66G; tat: L8Q, K19R, R78S; vif: N19K, K22N, L59V, E117D; vpr: N28S; vpu: V26A"}}, "children": [{"name": "KY392777", "node_attrs": {"div": 0.11893, "accession": "KY392777", "clade_membership": {"value": "H"}, "country": {"value": "CD"}, "date": {"value": 2001.0}, "Strain_name": {"value": "CG_0536_02_NGSID14"}, "LANL_subtype": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["T9C", "G52A", "C93A", "T94C", "A97G", "T155A", "G354A", "A370G", "T396C", "A417C", 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"T3625C", "T3649C", "T3751C", "G3859A", "A3866G", "A3901G", "C3946T", "A4064G", "A4109G", "T4147A", "G4150A", "G4186A", "A4189G", "C4210T", "C4428T", "A4432C", "A4642G", "T4678G", "T4679G", "A4697G", "G4736A", "T4769G", "T4793C", "C4890T", "G4913A", "C4937T", "C5006T", "G5049A", "C5062T", "A5087C", "A5112G", "A5122G", "A5134G", "G5200A", "A5226G", "G5236A", "A5305G", "G5308A", "C5382T", "T5391C", "T5448A", "C5536A", "A5537G", "G5543A", "C5551T", "A5587G", "G5668A", "A5682T", "A5694G", "A5721G", "C5802T", "-5806T", "G5856A", "G5858A", "A5921C", "T5923A", "C5924T", "A5964T", "T5980C", "A5995C", "C6010T", "G6022A", "C6026A", "T6034C", "A6061C", "C6097T", "G6099A", "G6133A", "A6136G", "T6151G", "T6169-", "G6170-", "T6171-", "A6172-", "-6175G", "A6177G", "A6181G", "C6183G", "A6189C", "G6192C", "T6193G", "A6195T", "T6196G", "-6201A", "G6203A", "-6207C", "-6208A", "-6211G", "-6212G", "-6213A", "A6214T", "-6216A", "-6217C", "G6218A", "G6220T", "A6223C", "-6226T", "G6227A", "A6228C", "A6229C", "C6230A", "A6232G", "A6233-", "A6234-", "A6235-", "T6244A", "A6253G", "T6256C", "A6273G", "A6276T", "C6278A", "T6285A", "G6303A", "T6307A", "G6323A", "A6333C", "A6338C", "A6420T", "G6451A", "A6464G", "A6466C", "A6475G", "C6489A", "A6535G", "A6571G", "G6572C", "A6576-", "G6577-", "C6603G", "C6607A", "C6612G", "A6616C", "C6641A", "A6648C", "A6664G", "C6666T", "A6684G", "T6724C", "A6728C", "C6729T", "A6735T", "A6742T", "C6752A", "A6759T", "A6764T", "A6765T", "G6771A", "G6773A", "A6775C", "A6786G", "T6787A", "A6788C", "C6793A", "C6797T", "A6798C", "A6809G", "A6818C", "A6822T", "A6823G", "C6824G", "C6826G", "T6827C", "T6829G", "-6830C", "-6831G", "-6832T", "-6833G", "A6840G", "A6848G", "A6854G", "A6859T", "A6865C", "A6875G", "T6876C", "G6880A", "A6881G", "T6898C", "A6926G", "A6937C", "-6957T", "-6972G", "-6975C", "A6978-", "A6989T", "-6996A", "A6997T", "-6998A", "-6999G", "A7000C", "T7003C", "A7004T", "-7005A", "C7008A", "-7009T", "C7019A", "A7027G", "A7044G", "C7045A", "A7094C", "C7096G", "A7129T", "T7138A", "G7144T", "A7151G", "A7154T", "T7156C", "-7164G", "-7166G", "-7167A", "-7171C", "T7180A", "A7186G", "C7201T", "A7241G", "G7252A", "C7267T", "G7315A", "T7324G", "G7333T", "A7373G", "T7400C", "C7429T", "G7450A", "A7533G", "T7624C", "C7625T", "G7628A", "A7629G", "A7633C", "C7645T", "A7676C", "A7685T", "G7717A", "A7753G", "A7880C", "C7906T", "A7998G", "G8036A", "G8079A", "C8095A", "C8145T", "G8173A", "G8180A", "G8188A", "A8193G", "C8277T", "A8288G", "C8293A", "A8297G", "C8351T", "A8455C", "A8486G", "A8564G", "G8590C", "T8595G", "G8666T", "T8843C", "A8874G", "C8937A", "T8939G", "G9005A", "T9017C", "T9094C", "G9137A"], "INT": ["I31V", "T97A", "S218L"], "RT-p51": ["P4T", "V8I", "S68G", "E122K", "T139Q", "I178M", "A207N", "P272A", "Q334E", "D335G", "K356R", "I375V"], "RT-p66": ["P4T", "V8I", "S68G", "E122K", "T139Q", "I178M", "A207N", "P272A", "Q334E", "D335G", "K356R", "I375V", "M452L", "E492A"], "gp120": ["S1N", "T23P", "K37M", "M56I", "L58M", "E69D", "S82N", "-106S", "-107K", "-109R", "-111M", "N113-", "E125-", "K127-", "K140R", "K141I", "Q142K", "V144E", "R150K", "D157-", "-162Q", "Y189F", "N202K", "T204D", "T212K", "E240Q", "T250R", "D251E", "T253S", "K254N", "P263T", "Q265P", "P271L", "K277R", "T292L", "D294V", "Q300K", "Y302F", "N304F", "S306N", "E307N", "N311R", "K312Q", "H315S", "T319A", "K323M", "H324E", "F325L", "-326R", "N327D", "K329R", "I332V", "K334E", "I341A", "I343V", "N358D", "K361D", "-368I", "T371S", "-372Y", "-373S", "-375N", "-376Y", "-377N", "T380N", "-381Y", "-382N", "P389T", "N397R", "Q412K", "N414Q", "-433G", "N437S", "-438D", "I463V"], "gp41": ["M4I", "F7L", "I24V", "K77R", "D109S", "E110D", "N125H", "T128S", "N140T", "I193L", "D232G", "V245I", "R259H", "A281V", "G293R", "K297R", "A325V", "I329V", "I332V"], "nef": ["D38A", "I48M", "G83A", "F85V", "E108D", "R178G", "H199K"], "p17": ["V7I", "K12R", "K28Q", "A54P", "Q59K", "L68I", "I92M", "K95Q", "T115-", "E123G", "S126N"], "p2": ["A10T"], "p24": ["Q50S", "A54S", "H87Q", "G120S", "T178S", "D180E", "N183H", "D187N", "T200N"], "p6": ["L1I", "P23-", "S24P", "P25S", "-26T", "K27R", "P30Q", "K33Q", "T39A", "R42K"], "p7": ["G4S"], "pro": ["A63T"], "rev": ["D7A", "S8D", "E10K", "C63Y", "L83I", "V109I", "G111E", "A114T"], "tat": ["N24K", "R53S", "Q54R", "R56Q", "P59S", "K71E"], "vif": ["K19R", "I31R", "K37R", "D61E", "A155T", "T159I", "R167S", "K176E", "K179R", "H183R"], "vpr": ["Q3R", "Q41G", "P93S", "S96P"], "vpu": ["V21I"]}, "labels": {"aa": "INT: I31V, T97A, S218L; RT-p51: P4T, V8I, S68G, E122K, T139Q, I178M, A207N, P272A, Q334E, D335G, K356R, I375V; RT-p66: P4T, V8I, S68G, E122K, T139Q, I178M, A207N, P272A, Q334E, D335G, K356R, I375V, M452L, E492A; gp120: S1N, T23P, K37M, M56I, L58M, E69D, S82N, -106S, -107K, -109R, -111M, N113-, E125-, K127-, K140R, K141I, Q142K, V144E, R150K, D157-, -162Q, Y189F, N202K, T204D, T212K, E240Q, T250R, D251E, T253S, K254N, P263T, Q265P, P271L, K277R, T292L, D294V, Q300K, Y302F, N304F, S306N, E307N, N311R, K312Q, H315S, T319A, K323M, H324E, F325L, -326R, N327D, K329R, I332V, K334E, I341A, I343V, N358D, K361D, -368I, T371S, -372Y, -373S, -375N, -376Y, -377N, T380N, -381Y, -382N, P389T, N397R, Q412K, N414Q, -433G, N437S, -438D, I463V; gp41: M4I, F7L, I24V, K77R, D109S, E110D, N125H, T128S, N140T, I193L, D232G, V245I, R259H, A281V, G293R, K297R, A325V, I329V, I332V; nef: D38A, I48M, G83A, F85V, E108D, R178G, H199K; p17: V7I, K12R, K28Q, A54P, Q59K, L68I, I92M, K95Q, T115-, E123G, S126N; p2: A10T; p24: Q50S, A54S, H87Q, G120S, T178S, D180E, N183H, D187N, T200N; p6: L1I, P23-, S24P, P25S, -26T, K27R, P30Q, K33Q, T39A, R42K; p7: G4S; pro: A63T; rev: D7A, S8D, E10K, C63Y, L83I, V109I, G111E, A114T; tat: N24K, R53S, Q54R, R56Q, P59S, K71E; vif: K19R, I31R, K37R, D61E, A155T, T159I, R167S, K176E, K179R, H183R; vpr: Q3R, Q41G, P93S, S96P; vpu: V21I"}}}, {"name": "AF190127", "node_attrs": {"div": 0.11964, "accession": "AF190127", "clade_membership": {"value": "H"}, "country": {"value": "BE"}, "date": {"value": 1993.0}, "Strain_name": {"value": "VI991"}, "LANL_subtype": {"value": "H"}}, "branch_attrs": {"mutations": {"nuc": ["T227C", "G265A", "A412G", "G481A", "A500T", "T506C", "T508A", "A520G", "A557C", "C576A", "T577C", "G579A", "A585G", "C586T", "G614T", "A617G", "C618A", "A659G", "C662T", "C669A", "A676G", "G686A", "G717A", "A752G", "G989A", "A1074G", "T1100A", "C1103T", "A1124G", "T1169C", "G1199A", "T1214C", "A1240G", "A1242G", "C1243T", "C1262T", "G1274A", "G1277A", "A1327G", "G1339A", "A1351G", "T1403A", "T1501C", "T1513C", "A1661G", "G1664A", "T1681C", "G1687A", "C1688G", "C1693T", "G1742C", "C1775A", "G1819A", "C1825A", "C1826A", "T1828A", "A1861G", "T1873C", "G1972A", "C1996T", "G1998T", "T2077G", "T2095G", "T2171C", "A2210T", "C2211T", "A2230T", "T2251C", "G2294A", "A2304G", "C2335T", "A2407G", "A2433G", "T2499C", "A2563C", "A2593G", "A2627G", "G2630A", "G2683A", "C2694A", "G2704A", "A2727G", "T2737C", "A2750C", "T2908C", "G2925A", "C2968A", "G3025A", "T3045C", "C3067A", "A3096C", "A3103G", "A3169G", "A3170T", "A3193G", "C3207T", "G3211A", "C3266T", "T3308C", "A3364G", "A3385G", "C3399A", "A3451G", "G3483A", "G3523A", "T3559G", "T3589C", "G3595A", "A3616G", "T3644C", "G3676A", "G3686T", "C3692T", "A3804T", "A3808G", "G3816A", "C3826T", "C3908T", "A3952C", "T3976C", "C4039T", "T4135C", "G4183C", "T4216C", "T4247C", "G4364C", "A4401C", "T4412C", "A4430C", "T4665C", "C4667T", "A4677G", "G4696A", "T4701G", "C4724T", "C4728A", "T4730C", "T4738C", "A4808C", "G4835T", "G4856A", "A4860G", "G4861A", "G4878A", "C4898T", "C4976T", "T4979C", "G4981T", "G4982T", "A4988C", "A5005G", "C5006A", "G5049T", "A5059G", "G5167A", "A5173G", "G5179A", "T5205A", "A5269G", "T5292C", "C5303T", "T5311C", "A5312G", "T5313C", "C5333T", "T5339C", "T5424C", "G5484A", "C5513A", "C5535A", "A5547G", "G5554A", "C5555A", "A5556G", "A5565G", "A5576C", "C5579T", "T5599A", "T5606A", "A5643G", "A5644G", "A5652T", "G5707T", "T5708A", "A5711G", "G5712-", "A5715G", "-5806C", "G5808T", "C5859T", "A5917G", "A5964G", "C5974A", "G6019A", "C6026T", "A6045C", "A6060T", "A6158G", "G6167A", "A6168G", "-6173A", "-6174A", "-6175T", "A6179G", "A6180T", "T6184A", "T6187A", "A6189G", "C6190T", "G6192A", "T6196C", "-6201C", "T6202A", "C6204A", "C6205T", "-6207T", "-6208C", "T6210A", "-6211T", "-6212A", "-6213T", "-6216G", "-6217A", "A6222T", "G6225A", "-6226G", "T6231A", "A6234G", "T6261C", "A6262C", "T6277C", "T6306C", "T6310C", "G6311A", "C6318A", "A6319G", "T6328A", "A6329G", "A6330G", "A6332G", "T6334A", "C6336G", "T6337A", "G6340T", "A6367G", "C6375A", "G6379A", "C6457T", "A6458G", "A6459G", "T6511C", "C6548T", "A6574G", "-6575G", "C6601T", "C6607T", "C6632T", "T6634A", "C6665A", "A6679G", "A6753G", "A6774G", "C6777A", "A6788G", "G6806A", "T6808C", "A6811C", "C6812A", "A6818G", "A6822G", "A6823C", "C6824T", "-6830G", "T6853A", "A6854C", "C6885T", "A6913G", "G6935A", "-6957C", "-6972C", "-6975A", "-6977G", "-6979C", "-6980A", "-6981C", "-6982C", "-6983T", "-6984A", "-6985T", "A6993G", "T6994C", "-6996C", "-6998G", "-6999A", "A7001G", "-7005T", "-7009A", "G7018A", "C7020A", "A7089G", "T7099C", "G7106A", "A7136T", "G7137T", "G7142C", "G7145A", "G7146A", "G7152C", "G7153A", "C7155A", "-7164C", "T7165C", "T7168-", "A7169-", "C7170-", "A7268G", "T7306A", "G7309A", "C7379T", "G7487A", "G7495A", "G7668A", "G7702A", "C7722A", "G7773A", "G7790A", "A7791G", "T7796A", "A7818G", "T7844A", "T7913C", "T7921A", "G7961A", "A7962G", "G7965A", "A8023G", "T8097C", "T8153C", "A8154T", "T8159G", "T8167C", "G8212A", "A8233T", "A8264C", "T8290C", "A8364G", "A8367T", "G8373A", "T8374G", "G8378A", "A8388G", "G8402A", "G8407A", "G8453A", "G8465A", "T8483C", "G8490T", "C8499G", "T8558G", "G8597T", "T8636A", "C8699T", "G8717T", "T8746A", "G8774A", "A8780G", "G8798T", "A8801G", "C8832T", "G8852A", "G8882A", "C8928A", "G8929A", "C9004T", "G9027A", "G9030A", "C9078T", "T9109A", "T9176G", "T9179G", "T9181A"], "INT": ["E10V", "R14K", "V112M", "Q136H", "G197R", "Q209P", "N219Q"], "RT-p51": ["T39L", "D67N", "K70R", "D113G", "I135T", "I178V", "V179I", "A200E", "K211R", "K219Q", "R277K", "D291E", "V317A", "D324E", "Q334P", "T359S", "A371V", "Y405H", "A435E"], "RT-p66": ["T39L", "D67N", "K70R", "D113G", "I135T", "I178V", "V179I", "A200E", "K211R", "K219Q", "R277K", "D291E", "V317A", "D324E", "Q334P", "T359S", "A371V", "Y405H", "A435E", "R463K", "D488E", "V531F"], "gp120": ["T2V", "K37R", "N64T", "E69V", "N102D", "E105S", "-106V", "-107N", "-109V", "-111K", "-112S", "-114N", "-115S", "-116T", "-117D", "-118I", "-119N", "-120I", "-121G", "-122E", "-123I", "-124Q", "-126Q", "K127R", "V136A", "K141N", "V151A", "V153I", "P155Q", "N158E", "D159G", "T160E", "T161R", "-162N", "T174K", "N202G", "T204K", "-241E", "P271T", "Q300R", "E307G", "T308K", "K312E", "V318I", "Q320K", "R322G", "K323S", "H324Y", "-326D", "N328-", "F333L", "K334Q", "T344I", "-368T", "-372N", "-373D", "-375Y", "-376N", "-377S", "-381E", "-382D", "-383I", "-384T", "-385G", "P389Q", "Q412R", "V418I", "R428F", "G430R", "G431N", "-433T", "S434N", "N437T", "T439-", "K472E"], "gp41": ["V62I", "R122K", "S157N", "D163S", "S165T", "K172R", "L181I", "F206L", "E220R", "G221E", "L265S", "Y284L", "W286G", "I321L"], "nef": ["S8G", "S9C", "V11S", "I16V", "M20I", "R22Q", "A50S", "P53A", "D98E", "Q125H", "F135Y", "E152D", "R196K"], "p17": ["K26R", "G49D", "E55D", "L58Q", "I61L", "E62G", "E74D", "L81T", "V82I", "T84V", "E93D", "Q112K", "K114R", "V128I"], "p2": ["A10S"], "p24": ["I115V", "K170R", "T171V", "K199R", "R203K", "Q207R"], "p6": ["L1P", "S3K", "P5L", "-26R", "K27Q", "K31-", "D32-", "K33-", "E34-", "P35-", "S47N", "P49Q", "L50*"], "p7": ["I12T", "F16S"], "pro": ["L10I", "C67F", "I93M", "F99L"], "rev": ["S8N", "E11G", "Q14R", "K17R", "I21L", "R38Q", "I59V", "I102T", "V104G", "S107P"], "tat": ["S46Y", "A60K", "N67T", "P68L", "K85E", "E86K"], "vif": ["Y27H", "I31V", "F39V", "H48N", "I51T", "Q83H", "R92E", "V98I", "R132I", "E134D", "N140R", "A155S", "K158R"], "vpr": ["F34Y", "Q41D", "I63T", "I70A"], "vpu": ["I13V", "V34*"]}, "labels": {"aa": "INT: E10V, R14K, V112M, Q136H, G197R, Q209P, N219Q; RT-p51: T39L, D67N, K70R, D113G, I135T, I178V, V179I, A200E, K211R, K219Q, R277K, D291E, V317A, D324E, Q334P, T359S, A371V, Y405H, A435E; RT-p66: T39L, D67N, K70R, D113G, I135T, I178V, V179I, A200E, K211R, K219Q, R277K, D291E, V317A, D324E, Q334P, T359S, A371V, Y405H, A435E, R463K, D488E, V531F; gp120: T2V, K37R, N64T, E69V, N102D, E105S, -106V, -107N, -109V, -111K, -112S, -114N, -115S, -116T, -117D, -118I, -119N, -120I, -121G, -122E, -123I, -124Q, -126Q, K127R, V136A, K141N, V151A, V153I, P155Q, N158E, D159G, T160E, T161R, -162N, T174K, N202G, T204K, -241E, P271T, Q300R, E307G, T308K, K312E, V318I, Q320K, R322G, K323S, H324Y, -326D, N328-, F333L, K334Q, T344I, -368T, -372N, -373D, -375Y, -376N, -377S, -381E, -382D, -383I, -384T, -385G, P389Q, Q412R, V418I, R428F, G430R, G431N, -433T, S434N, N437T, T439-, K472E; gp41: V62I, R122K, S157N, D163S, S165T, K172R, L181I, F206L, E220R, G221E, L265S, Y284L, W286G, I321L; nef: S8G, S9C, V11S, I16V, M20I, R22Q, A50S, P53A, D98E, Q125H, F135Y, E152D, R196K; p17: K26R, G49D, E55D, L58Q, I61L, E62G, E74D, L81T, V82I, T84V, E93D, Q112K, K114R, V128I; p2: A10S; p24: I115V, K170R, T171V, K199R, R203K, Q207R; p6: L1P, S3K, P5L, -26R, K27Q, K31-, D32-, K33-, E34-, P35-, S47N, P49Q, L50*; p7: I12T, F16S; pro: L10I, C67F, I93M, F99L; rev: S8N, E11G, Q14R, K17R, I21L, R38Q, I59V, I102T, V104G, S107P; tat: S46Y, A60K, N67T, P68L, K85E, E86K; vif: Y27H, I31V, F39V, H48N, I51T, Q83H, R92E, V98I, R132I, E134D, N140R, A155S, K158R; vpr: F34Y, Q41D, I63T, I70A; vpu: I13V, V34*"}}}]}]}]}]}]}, {"name": "NODE_0000281", "node_attrs": {"div": 0.01817, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A491G", "C897T", "T1444-", "A1445-", "A1532G", "A2305G", "T2383C", "C2845T", "A2932G", "A3196G", "C3225T", "A3226G", "G3307C", "G3787A", "A3808G", "G4459A", "A4564G", "G5179A", "A5186C", "T5188G", "C5478T", "A5493G", "G5496A", "C5579T", "G5712A", "A5728T", "A5748G", "G5845A", "G5856A", "A6073G", "C6412T", "G6547A", "T6766C", "C6850A", "A6936G", "G7276A", "A7590C", "G7688A", "C8168G", "T8290C", "A8426G", "C8948T", "T8972-", "C8978-"], "RT-p51": ["T377M", "E404D"], "RT-p66": ["T377M", "E404D"], "gp120": ["S1N", "A288T", "G307K", "K361G", "Q412K"], "gp41": ["N96T", "D129N", "W286G", "L289V"], "p2": ["A11-"], "rev": ["V104G", "S107C"], "tat": ["P68L"], "vif": ["T159R"], "vpr": ["N28Q"], "vpu": ["R41W", "P76-"]}, "labels": {"aa": "RT-p51: T377M, E404D; RT-p66: T377M, E404D; gp120: S1N, A288T, G307K, K361G, Q412K; gp41: N96T, D129N, W286G, L289V; p2: A11-; rev: V104G, S107C; tat: P68L; vif: T159R; vpr: N28Q; vpu: R41W, P76-"}}, "children": [{"name": "results/subtype_trees/L.nwk", "node_attrs": {"div": 0.05516, "clade_membership": {"value": "L"}}, "branch_attrs": {"mutations": {"nuc": ["C96A", "C160T", "-280G", "-305T", "A412G", "G413C", "A518T", "A554G", "G629A", "A666G", "A678G", "G683A", "-709A", "-711A", "-713C", 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"RT-p66": ["E207A", "S251D", "T338S", "M357R", "A376S", "R390K", "M452K", "V467I", "T477A", "S491L", "V493A", "S554A"], "gp120": ["N5Q", "E19D", "K21E", "T35K", "V37A", "N52S", "I56L", "P96F", "-105D", "-111N", "K127T", "N132K", "I137L", "K143N", "Y145H", "I156L", "A238S", "D251N", "S263T", "S278G", "Q287R", "K319D", "K320A", "-368N", "-370N", "-372N", "-373S", "-374T", "-377S", "-378N", "-380T", "N397R", "M398T", "N414T", "T416K"], "gp41": ["V7L", "M54L", "K77E", "D78G", "I84L", "R122K", "R133G", "E137D", "N140K", "Q147K", "A151E", "N212T", "E220G", "Q229E", "R231N", "D232N", "I235V", "N251S", "R269K", "T270G", "V271L", "E272-", "L273-", "L274-", "G275-", "A310V"], "nef": ["S8-", "S9-", "I10-", "V11-", "T23A", "P53A", "H116N"], "p17": ["K26R", "I107A", "S111G", "T115A"], "p24": ["L6M", "E79D", "T178S", "R203K"], "p6": ["S3N", "I21T", "K31R", "-36P"], "pro": ["L33V", "I36M", "N37T"], "rev": ["D7E", "K14R", "K30N", "A47R", "R50Q", "H53R", "D88G", "C89-", "G90E", "S92-", "P100T"], "tat": ["N7K", "Y32L", "L39M", "R53G", "Q54K", "S62G", "Q63P", "L68I", "I69V", "T77P", "K85E"], "vif": ["R47T", "K50R", "L64I", "V98I", "I154V", "R181K"], "vpr": ["E55Q"], "vpu": ["-2L", "L5Q", "I18L", "R31K", "E63T", "-68E", "V79-", "D80-", "N81-", "L82-"]}, "labels": {"aa": "RT-p51: E207A, S251D, T338S, M357R, A376S, R390K; RT-p66: E207A, S251D, T338S, M357R, A376S, R390K, M452K, V467I, T477A, S491L, V493A, S554A; gp120: N5Q, E19D, K21E, T35K, V37A, N52S, I56L, P96F, -105D, -111N, K127T, N132K, I137L, K143N, Y145H, I156L, A238S, D251N, S263T, S278G, Q287R, K319D, K320A, -368N, -370N, -372N, -373S, -374T, -377S, -378N, -380T, N397R, M398T, N414T, T416K; gp41: V7L, M54L, K77E, D78G, I84L, R122K, R133G, E137D, N140K, Q147K, A151E, N212T, E220G, Q229E, R231N, D232N, I235V, N251S, R269K, T270G, V271L, E272-, L273-, L274-, G275-, A310V; nef: S8-, S9-, I10-, V11-, T23A, P53A, H116N; p17: K26R, I107A, S111G, T115A; p24: L6M, E79D, T178S, R203K; p6: S3N, I21T, K31R, -36P; pro: L33V, I36M, N37T; rev: D7E, K14R, K30N, A47R, R50Q, H53R, D88G, C89-, G90E, S92-, P100T; tat: N7K, Y32L, L39M, R53G, Q54K, S62G, Q63P, L68I, I69V, T77P, K85E; vif: R47T, K50R, L64I, V98I, I154V, R181K; vpr: E55Q; vpu: -2L, L5Q, I18L, R31K, E63T, -68E, V79-, D80-, N81-, L82-", "clade": "L"}}, "children": [{"name": "MN271384", "node_attrs": {"div": 0.1231, "accession": "MN271384", "clade_membership": {"value": "L"}, "country": {"value": "CD"}, "date": {"value": 2001.0}, "Strain_name": {"value": "L_CG_0018a_01"}, "LANL_subtype": {"value": "L"}}, "branch_attrs": {"mutations": {"nuc": ["C23T", "T154C", "A157T", "T159C", "G162C", "G167A", "T201C", "A215G", "A217T", "G265A", "A302T", "C413T", "A418G", "C471G", "C507A", "A516C", "C540A", "G542A", "A548G", "T572C", "C587T", "T641C", "G644A", "T655C", "A659G", "C662A", "A676G", "A677G", "C691A", "G696A", "A699C", "A709G", "G716A", "A725G", "G743A", "A747G", "T748C", "C767T", "G771T", "T782A", "A785G", "T788A", "A810G", "C827T", "A959G", "A1022G", "C1091T", "T1100C", 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"T8281C", "T8292G", "A8350C", "A8378G", "A8388G", "T8411G", "G8414T", "G8427A", "A8432G", "A8453G", "C8460T", "T8492C", "A8522G", "G8534T", "A8537G", "A8540G", "C8543T", "G8554A", "T8568C", "A8573G", "A8584T", "C8603T", "T8646C", "C8699T", "T8711C", "A8750C", "C8751T", "A8762C", "G8774A", "C8775T", "A8793G", "G8805A", "C8840T", "T8867C", "A8870G", "G8873A", "T8887A", "A8892C", "C8911G", "A8912C", "A8916G", "G8917A", "A8918G", "A8922G", "A8930C", "G8931C", "G8936A", "T8947A", "A8954G", "G8955A", "G8970C", "-8974G", "-8978C", "A8980C", "G8981A", "G8983A", "C8985G", "T8986A", "C8990T", "C8992A", "T9017A", "T9051A", "A9095G", "C9108T", "T9181A"], "INT": ["S17N", "I84L", "S119P", "D207N", "K211T", "Q221N"], "RT-p51": ["D121H", "I142V", "S162C", "K174N", "K281R", "A286T", "V317A", "T400A", "T403M", "A435L"], "RT-p66": ["D121H", "I142V", "S162C", "K174N", "K281R", "A286T", "V317A", "T400A", "T403M", "A435L", "N447I", "K452Q", "K465R", "S468T", "T470N", "K512R", "L517I"], "gp120": ["E4P", "K18R", "A37K", "E59T", "N71K", "Q86E", "K93Q", "D105N", "-106G", "-107T", "N108T", "-109R", "T110N", "-112T", "N113G", "-114M", "-115T", "E125-", "I126-", "T127-", "V133A", "K140R", "K142E", "V144R", "L151Q", "D152G", "N158E", "N159K", "S162T", "I173L", "D202E", "K204Q", "P210T", "L237I", "I249L", "L260F", "I266M", "N267I", "T269A", "I281V", "I305L", "K307E", "E309K", "K312E", "Q315N", "Q316R", "D319S", "-326N", "K329-", "I332E", "N334R", "T345S", "H346L", "F348L", "G351A", "N368Y", "N369S", "T371G", "-375W", "-376Y", "S377H", "-379A", "-381N", "-384D", "-385T", "R391K", "T414P", "N418T", "N432K", "-433R", "-436G", "K472E"], "gp41": ["A14T", "S35A", "N42D", "H53R", "Q66R", "V69I", "S107T", "D109E", "D113E", "E119Q", "K140R", "K144Q", "D148E", "A156T", "S157N", "N166R", "V187I", "S192N", "N195R", "I210Y", "T212A", "D230G", "A243P", "A245V", "R259L", "F263L", "I264L", "-272S", "R276-", "L285G", "Q290L", "I301V", "T307I", "V321I", "V322G", "L330R"], "nef": ["G3A", "I16V", "E24D", "G29R", "H40Y", "E64D", "R71K", "Y81F", "Y102H", "K151E", "E155K", "C163S", "M182K", "K184Q", "S188R", "A190G", "R192E", "I194V", "E197Q", "F202Y", "D205N"], "p17": ["R26S", "K28R", "L46V", "Q58K", "I61L", "Q69K", "N109K", "K114R", "A119E", "D121N", "K122Q"], "p24": ["M6A", "A14S", "I27V", "D128E", "T171V", "N183G", "A204S", "P207Q", "S225G", "V230I"], "p6": ["E6A", "P23L", "S24P", "P30Q", "L35Y", "T39V"], "p7": ["R10K", "I12T", "R29K"], "pro": ["T37A", "K70R"], "rev": ["G6E", "S8G", "Y28L", "N30S", "P31T", "R53S", "S54A", "S61T", "T62A", "P67S", "A68T", "H82T", "G88-", "E90-", "T91-", "Q95E", "S99G", "S103R"], "tat": ["Y26F", "K54R", "P63S", "D64N", "L74F", "S75T", "P77H", "P84Q"], "vif": ["R19N", "N22K", "H27Y", "Y30H", "G37K", "S46I", "I51K", "S53A", "I57V", "R63E", "Q91L", "L109Q", "H110Y", "K122R", "H127R", "N140Y", "K158R", "V170A", "T180I", "M189I"], "vpr": ["A4T", "E17Q", "P37V", "N48D", "R85Q"], "vpu": ["-3G", "L4W", "Q5E", "-6I", "A8G", "A15G", "I17G", "L33I", "L34R", "T63K", "-69V"]}, "labels": {"aa": "INT: S17N, I84L, S119P, D207N, K211T, Q221N; RT-p51: D121H, I142V, S162C, K174N, K281R, A286T, V317A, T400A, T403M, A435L; RT-p66: D121H, I142V, S162C, K174N, K281R, A286T, V317A, T400A, T403M, A435L, N447I, K452Q, K465R, S468T, T470N, K512R, L517I; gp120: E4P, K18R, A37K, E59T, N71K, Q86E, K93Q, D105N, -106G, -107T, N108T, -109R, T110N, -112T, N113G, -114M, -115T, E125-, I126-, T127-, V133A, K140R, K142E, V144R, L151Q, D152G, N158E, N159K, S162T, I173L, D202E, K204Q, P210T, L237I, I249L, L260F, I266M, N267I, T269A, I281V, I305L, K307E, E309K, K312E, Q315N, Q316R, D319S, -326N, K329-, I332E, N334R, T345S, H346L, F348L, G351A, N368Y, N369S, T371G, -375W, -376Y, S377H, -379A, -381N, -384D, -385T, R391K, T414P, N418T, N432K, -433R, -436G, K472E; gp41: A14T, S35A, N42D, H53R, Q66R, V69I, S107T, D109E, D113E, E119Q, K140R, K144Q, D148E, A156T, S157N, N166R, V187I, S192N, N195R, I210Y, T212A, D230G, A243P, A245V, R259L, F263L, I264L, -272S, R276-, L285G, Q290L, I301V, T307I, V321I, V322G, L330R; nef: G3A, I16V, E24D, G29R, H40Y, E64D, R71K, Y81F, Y102H, K151E, E155K, C163S, M182K, K184Q, S188R, A190G, R192E, I194V, E197Q, F202Y, D205N; p17: R26S, K28R, L46V, Q58K, I61L, Q69K, N109K, K114R, A119E, D121N, K122Q; p24: M6A, A14S, I27V, D128E, T171V, N183G, A204S, P207Q, S225G, V230I; p6: E6A, P23L, S24P, P30Q, L35Y, T39V; p7: R10K, I12T, R29K; pro: T37A, K70R; rev: G6E, S8G, Y28L, N30S, P31T, R53S, S54A, S61T, T62A, P67S, A68T, H82T, G88-, E90-, T91-, Q95E, S99G, S103R; tat: Y26F, K54R, P63S, D64N, L74F, S75T, P77H, P84Q; vif: R19N, N22K, H27Y, Y30H, G37K, S46I, I51K, S53A, I57V, R63E, Q91L, L109Q, H110Y, K122R, H127R, N140Y, K158R, V170A, T180I, M189I; vpr: A4T, E17Q, P37V, N48D, R85Q; vpu: -3G, L4W, Q5E, -6I, A8G, A15G, I17G, L33I, L34R, T63K, -69V"}}}, {"name": "L_NODE_0000001", "node_attrs": {"div": 0.0752, "clade_membership": {"value": "L"}}, "branch_attrs": {"mutations": {"nuc": ["A411C", "T467C", "A494G", "T567C", "T596C", "C669A", "C731T", "G740A", "G818A", "C950A", "T1052C", "A1124G", "A1154T", "C1169T", "G1260T", "G1302A", "C1350A", "G1443-", "-1456C", "T1481C", "G1543A", "T1754G", "A1819G", "C1831T", "C2281T", "G2431A", "G2462A", "C2464T", "G2473A", "C2503T", "A2686G", "A2727G", "C2770T", "C2848T", "A2918C", "A2925G", "A2974G", "C2978A", "G2984A", "A2989G", "G3016A", "A3019G", "T3139C", "T3436C", "C3449A", "A3539C", "A3631C", "G3685A", "T3757C", "A3781G", "C3823T", "T3977C", "A4076G", "A4107C", "G4156A", "T4165C", "T4234C", "T4585C", "G4622A", "G4637A", "T4670C", "T4701G", "G4708A", "C4728A", "T4761C", "G4767A", "A4788G", "A4860G", "G4888A", "A4937C", "G4995A", "A5056C", "G5137A", "G5167A", "A5215G", "G5225A", "G5226A", "A5375G", "A5376C", "T5382C", "C5508A", "G5599T", "A5603C", "T5604-", "G5605-", "T5606-", "-5615T", "T5641A", "T5688C", "A5707T", "C5727T", "A5795C", "T5836A", "T5857A", "C5869A", "T5871C", "C6026T", "T6046C", "T6151C", "-6167G", "-6170G", "-6171T", "-6173A", "T6193C", "T6244C", "G6267A", "A6316G", "G6323A", "A6330C", "A6525G", "A6578G", "A6683C", "C6717T", "T6735G", "G6771C", "T6772A", "C6777G", "A6778G", "T6787G", "A6800C", "A6811C", "A6822G", "A6856C", "C6857T", "T6901C", "T6928C", "-6962G", "-6971G", "-6973T", "-6975A", "-6976G", "-6977A", "-6978A", "-6979T", "-6986A", "-6987C", "-6989A", "-6996A", "-6997G", "-6999G", "-7000T", "A7093G", "G7198A", "A7225G", "A7269G", "C7313A", "A7348C", "A7376G", "T7386C", "T7597C", "T7624C", "C7625T", "A7626T", "A7633C", "C7645T", "A7688C", "C7690A", "T7751C", "C7805T", "G7868A", "G7883A", "T7968C", "G7992A", "T8037C", "C8103T", "C8131-", "A8219G", "A8284G", "T8323C", "G8335A", "G8349A", "G8354A", "G8376C", "G8377A", "G8426T", "A8446G", "C8500A", "A8503C", "T8511C", "G8512A", "A8525G", "G8590C", "T8708C", "C8832T", "G8875A", "G8905A", "-8971C", "-8972T", "-8974T"], "INT": ["I101V", "K111T", "G283S", "D288N"], "RT-p51": ["D123N", "K211R", "K275Q", "K277R", "L295M", "E297K"], "RT-p66": ["D123N", "K211R", "K275Q", "K277R", "L295M", "E297K", "I482L", "K512S"], "gp120": ["N1K", "L6S", "-106V", "R138K", "D157N", "K224R", "I242V", "E265K", "T288V", "S306T", "N311K", "K323R", "P335S", "-379C", "I396V", "R401G", "-436T", "N437K", "K472R"], "gp41": ["L4M", "T25A", "V28A", "Q108L", "E110D", "N129Q", "A189T", "V194I", "I222T", "A267V", "T306A"], "nef": ["G3N", "-8Q", "G12-", "E28D", "Q35R", "D54A", "W57Q", "G83A", "R178K"], "p17": ["Q112K", "S125N"], "p2": ["-10T"], "p24": ["A177S", "P207T"], "p6": ["N47S", "S51L"], "p7": ["R26K"], "rev": ["-89T", "G93-", "T94-", "Q95-"], "tat": ["S87P"], "vif": ["F39V", "R41K", "H48N", "D61N", "T68A", "R92G", "G101D", "E117D", "A137T", "K157T", "R184K"], "vpr": ["G41N", "N91H", "S93P"], "vpu": ["-3I", "L12I", "-69P"]}, "labels": {"aa": "INT: I101V, K111T, G283S, D288N; RT-p51: D123N, K211R, K275Q, K277R, L295M, E297K; RT-p66: D123N, K211R, K275Q, K277R, L295M, E297K, I482L, K512S; gp120: N1K, L6S, -106V, R138K, D157N, K224R, I242V, E265K, T288V, S306T, N311K, K323R, P335S, -379C, I396V, R401G, -436T, N437K, K472R; gp41: L4M, T25A, V28A, Q108L, E110D, N129Q, A189T, V194I, I222T, A267V, T306A; nef: G3N, -8Q, G12-, E28D, Q35R, D54A, W57Q, G83A, R178K; p17: Q112K, S125N; p2: -10T; p24: A177S, P207T; p6: N47S, S51L; p7: R26K; rev: -89T, G93-, T94-, Q95-; tat: S87P; vif: F39V, R41K, H48N, D61N, T68A, R92G, G101D, E117D, A137T, K157T, R184K; vpr: G41N, N91H, S93P; vpu: -3I, L12I, -69P"}}, "children": [{"name": "AF457101", "node_attrs": {"div": 0.10307, "accession": "AF457101", "clade_membership": {"value": "L"}, "country": {"value": "CD"}, "date": {"value": 1990.0}, "Strain_name": {"value": "90CD121E12"}, "LANL_subtype": {"value": "L"}}, "branch_attrs": {"mutations": {"nuc": ["G346A", "A386G", "A509G", "A520T", "C537T", "G615A", "T641A", "T655C", "C668T", "A705G", "C714A", "G770A", "G771C", "A1192G", "C1211T", "C1229T", "T1244C", "G1301A", "T1303C", "C1362T", "-1443A", "-1444T", "-1445G", "-1455A", "-1457T", "C1460-", "A1461G", "C1492A", "A1493G", "G1498A", "T1646C", "G1664A", "C1692A", "C1706T", "G1739A", "A1740G", "-1746A", "-1747C", "-1748C", "C1768T", "C1782T", "A2007G", "T2024C", "A2032G", "G2068A", "T2101C", "G2158A", "G2173A", "A2185G", "G2224A", "G2305A", "A2368G", "G2567T", "A2611G", "T2631C", "A2641G", "G2926A", "G2932A", "A3026G", "C3067T", "G3142A", "A3265G", "A3302G", "T3399C", "A3435G", "G3442A", "A3476C", "G3477A", "G3491A", "T3492C", "A3526G", "C3547T", "C3757A", "G3808A", "G3916A", "G3925A", "T3962C", "G3989A", "A4063C", "G4109A", "T4110C", "A4111T", "C4123T", "A4183G", "C4210T", "T4276G", "T4291C", "A4303G", "C4428T", "A4430C", "G4474C", "A4658G", "A4694C", "G4695A", "G4696A", "C4726T", "T4730C", "G4765A", "T4769C", "C4820T", "G4865A", "C4911A", "C4955A", "A4988C", "G5049C", "C5056T", "C5091T", "T5102C", "C5125T", "G5185A", "T5260C", "A5282C", "T5391C", "A5491G", "C5495A", "G5561A", "-5612G", "A5621C", "A5623-", "T5624-", "A5625-", "A5656G", "T5657G", "A5689C", "A5716C", "G5717A", "A5720G", "T5778C", "A5794C", "C5795T", "C5859G", "C5862A", "A5867C", "C5878T", "A5917C", "C5949G", "G5956A", "G5965A", "A6030T", "C6097T", "A6137T", "C6139T", "-6172G", "-6174C", "-6175T", "T6178C", "G6180A", "T6181C", "T6184A", "A6185G", "A6186C", "A6188G", "-6189C", "G6224-", "A6230C", "A6248G", "A6249C", "A6283T", "A6320C", "A6326G", "T6328G", "T6331A", "T6373C", "G6451A", "A6464G", "C6469T", "A6489G", "G6572A", "C6632T", "C6660G", "C6670T", "A6682G", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6714G", "G6731A", "G6735A", "A6767C", "G6773A", "A6776T", "G6779C", "A6789G", "A6791G", "A6809G", "C6811T", "A6848G", "C6875T", "T6895C", "C6925T", "G6940A", "T6946C", "-6972C", "-6974G", "-6980A", "-6981A", "-6982T", "-6983T", "-6984G", "-6985C", "-6993G", "-7006A", "T7009C", "C7016A", "C7018T", "C7101T", "C7107A", "A7108C", "A7113G", "G7132A", "A7148G", "G7152A", "A7154G", "T7156G", "-7162T", "A7164C", "T7165A", "T7228C", "A7234G", "G7366A", "A7620G", "G7627A", "G7628A", "G7668A", "C7706A", "C7825T", "G7831A", "G7988A", "C7996T", "A7998C", "A8032G", "G8050A", "T8097C", "-8117A", "-8118G", "-8119A", "-8120C", "C8129-", "G8130-", "C8132-", "G8180A", "G8194A", "C8221T", "A8245G", "G8264T", "A8276G", "T8279G", "A8305G", "G8407A", "C8440T", "A8453G", "A8458G", "G8499A", "A8500G", "G8528A", "G8534A", "A8537T", "G8554A", "G8588A", "T8595G", "T8636A", "T8759A", "A8793G", "A8794T", "A8798G", "G8834A", "T8883C", "C8900T", "A8918C", "T8923A", "A8924G", "T8947A", "A8950T", "A8980G", "T9017A", "C9078T", "T9098C", "C9129T"], "INT": ["M50I", "V72I", "E96D", "V112T", "D167E", "T218I", "K219Q"], "RT-p51": ["A158S", "V179A", "K311E", "T403A"], "RT-p66": ["A158S", "V179A", "K311E", "T403A", "N447S", "R461Q", "V466T"], "gp120": ["A2G", "A3E", "E21D", "A32G", "E59V", "T95S", "F96S", "-107G", "-109N", "N111A", "-112A", "I126L", "K132A", "N157-", "N159E", "N160T", "K204E", "K212R", "E240K", "L260F", "T269S", "K277Q", "A291T", "T292S", "G293N", "D294I", "I305L", "T308W", "E309Q", "K312R", "T313A", "N327-", "I332V", "N370C", "T374E", "-375S", "-376N", "N378S", "T380N", "-381E", "-385T", "L388I", "K416M", "N420S", "-433E", "N435D"], "gp41": ["K106R", "D109N", "K147Q", "D148E", "M176I", "E229K", "N232T", "L265S", "G293S", "V321L", "I325V", "C326G"], "nef": ["R22Q", "A33V", "K39R", "A53S", "E65G", "R71K", "F85V", "D98E", "F139L", "K151V", "C163S", "S188H", "R192S", "I194K", "F202Y", "Y203F"], "p17": ["R4K", "E62V", "L68F", "V94I", "D102E", "N124D", "Q127K"], "p2": ["A7M", "-12T", "I13V"], "p24": ["A14P", "K154R", "V191T", "S225G"], "p6": ["P5T", "T21V", "P23T", "S24P", "P25S", "-26P", "P30L", "L35S", "T39A"], "p7": ["R11K"], "pro": ["K70R"], "rev": ["V16I", "R47K", "Q50Y", "T62A", "A68T", "G111E", "E116K"], "tat": ["M39V", "T40K", "G62D"], "vif": ["K36N", "G37K", "T47I", "G60E", "L109M", "E134D", "A155P", "T157I", "T180I"], "vpr": ["I60L", "S96P"], "vpu": ["L2W", "Q5P", "A8G", "I17G", "I28L", "R37Q", "K38R", "T63L", "-70D", "-71M"]}, "labels": {"aa": "INT: M50I, V72I, E96D, V112T, D167E, T218I, K219Q; RT-p51: A158S, V179A, K311E, T403A; RT-p66: A158S, V179A, K311E, T403A, N447S, R461Q, V466T; gp120: A2G, A3E, E21D, A32G, E59V, T95S, F96S, -107G, -109N, N111A, -112A, I126L, K132A, N157-, N159E, N160T, K204E, K212R, E240K, L260F, T269S, K277Q, A291T, T292S, G293N, D294I, I305L, T308W, E309Q, K312R, T313A, N327-, I332V, N370C, T374E, -375S, -376N, N378S, T380N, -381E, -385T, L388I, K416M, N420S, -433E, N435D; gp41: K106R, D109N, K147Q, D148E, M176I, E229K, N232T, L265S, G293S, V321L, I325V, C326G; nef: R22Q, A33V, K39R, A53S, E65G, R71K, F85V, D98E, F139L, K151V, C163S, S188H, R192S, I194K, F202Y, Y203F; p17: R4K, E62V, L68F, V94I, D102E, N124D, Q127K; p2: A7M, -12T, I13V; p24: A14P, K154R, V191T, S225G; p6: P5T, T21V, P23T, S24P, P25S, -26P, P30L, L35S, T39A; p7: R11K; pro: K70R; rev: V16I, R47K, Q50Y, T62A, A68T, G111E, E116K; tat: M39V, T40K, G62D; vif: K36N, G37K, T47I, G60E, L109M, E134D, A155P, T157I, T180I; vpr: I60L, S96P; vpu: L2W, Q5P, A8G, I17G, I28L, R37Q, K38R, T63L, -70D, -71M"}}}, {"name": "AF286236", "node_attrs": {"div": 0.10062, "accession": "AF286236", "clade_membership": {"value": "L"}, "country": {"value": "CD"}, "date": {"value": 1983.0}, "Strain_name": {"value": "83CD003_Z3"}, "LANL_subtype": {"value": "L"}}, "branch_attrs": {"mutations": {"nuc": ["A133T", "T159G", "T200C", "T201G", "A301G", "T396C", "G463A", "C471A", "C482T", "A500G", "A520G", "C567A", "A576C", "C577T", "A578T", "G671A", "A680T", "A706G", "C713T", "T722C", "C767T", "T824C", "A1022G", "T1100C", "A1199T", "A1242G", "C1243T", "T1403C", "G1404A", "T1421G", "C1439T", "-1455G", "T1741C", "C1783T", "T1784C", "C1785T", "C1786A", "G1794A", "T1828C", "A2005G", "G2074A", "A2210C", "C2211T", "A2230G", "A2344G", "C2613A", "A2615G", "A2626G", "G2728A", "G2837A", "G2951A", "A3071G", "A3088G", "C3252T", "T3262C", "A3293T", "C3307T", "G3391C", "G3398A", "A3400G", "A3409G", "T3738C", "A3760G", "A3805G", "A3816G", "T3889C", "C3994T", "A4025C", "A4045G", "T4216C", "G4642A", "G4677A", "A4694G", "A4782G", "T4868C", "T4907C", "G5040A", "T5084C", "A5154C", "G5188T", "C5237T", "T5292G", "A5345G", "T5356C", "A5396G", "T5415C", "A5447G", "T5451C", "A5462G", "G5566A", "C5584T", "T5599C", "-5612C", "G5613C", "G5630C", "A5702G", "A5848G", "G5861A", "C5862T", "A5947G", "G5963T", "A6019G", "T6020C", "A6030G", "A6061G", "C6067A", "G6073A", "C6141T", "C6165T", "-6172A", "-6174A", "-6175G", "T6187C", "-6189A", "C6190T", "-6194A", "-6195C", "-6196T", "-6218G", "-6219A", "-6220A", "-6221G", "-6222A", "-6223A", "-6225C", "-6226T", "G6227A", "A6228C", "A6229C", "A6232C", "A6250G", "A6254C", "A6265G", "A6276C", "A6278G", "A6282C", "G6290A", "T6321C", "T6322A", "A6329T", "A6333G", "G6336T", "T6337A", "C6347T", "A6430T", "A6668G", "T6673G", "T6676G", "C6678T", "-6689A", "C6713A", "C6729A", "A6734G", "G6740A", "G6741C", "G6743-", "A6744-", "T6745-", "A6746-", "T6747-", "A6748-", "A6749G", "A6775T", "A6776G", "A6786G", "A6790T", "A6810T", "C6826A", "-6833A", "-6834A", "-6835T", "A6842T", "C6875A", "A6880G", "G6894C", "G6936A", "A6945C", "A6947G", "C6951T", "-6972A", "-6974A", "-6980T", "-6981G", "-6982C", "A6990G", "-6993C", "G7004T", "A7005G", "-7006C", "A7027G", "A7037G", "T7039G", "A7088G", "C7101G", "A7106T", "A7123T", "A7151G", "T7153C", "A7158C", "G7160C", "-7162A", "G7197A", "A7219G", "A7312G", "A7375G", "A7420G", "G7535A", "G7631A", "A7646C", "A7691G", "A7705G", "G7717A", "A7737G", "C7742A", "A7747T", "T7783C", "T7796A", "T7852C", "C7874T", "T7930C", "A7931C", "C7960A", "G7964A", "C8044A", "C8063A", "C8092A", "C8106T", "G8107A", "-8131A", "T8155C", "A8172T", "G8254A", "A8266G", "T8268G", "C8290T", "C8294A", "A8396G", "T8456G", "C8460T", "C8491A", "T8492A", "T8501G", "A8531C", "A8533G", "A8604G", "C8699T", "C8708A", "T8766C", "G8767C", "A8829T", "A8846C", "G8864T", "C8904T", "A8905C", "A8922C", "C8966T", "-8978A", "A8979G", "C8992A", "G9087-", "T9115C"], "INT": ["K14R", "I84L"], "RT-p51": ["T39L", "T173K", "K174E", "D248N", "A286T", "I326V", "T386I", "T400S", "E432D", "A435M"], "RT-p66": ["T39L", "T173K", "K174E", "D248N", "A286T", "I326V", "T386I", "T400S", "E432D", "A435M", "V548A"], "gp120": ["A3I", "Q5K", "A37S", "E59G", "N71K", "T104I", "-107K", "-109S", "-112N", "-114T", "-122E", "-123E", "-124A", "E125T", "T134P", "K141T", "K142E", "N143T", "A146T", "N158V", "N159T", "N272G", "N273S", "N274D", "T275K", "R276K", "K277I", "G278R", "I279Q", "H280S", "-282R", "-283I", "R287K", "T292K", "D294G", "G296T", "D297G", "I298-", "R299-", "K307D", "T308G", "K311R", "K312N", "D319I", "H324Q", "T330S", "L341I", "S347T", "G361E", "S365G", "N368D", "N369K", "T371C", "N372T", "-375E", "-381G", "-382N", "I395V", "K412E", "K416R", "N418S", "-433G", "N435A", "K437Q", "R448K"], "gp41": ["I24M", "G78S", "D110N", "M115L", "K122R", "I130V", "I135L", "N145S", "S165T", "L191F", "I210L", "G221R", "D247E", "L254I", "F263L", "A268V", "Q290L", "V322G", "H331N"], "nef": ["D38E", "H40Y", "A50E", "A53E", "E63D", "E64G", "S88G", "C142P", "E174D", "I194L"], "p17": ["R43K", "L46I", "E62G", "L78I", "T81L", "A107V", "N124S"], "p2": ["A7-", "-11A"], "p24": ["T171V", "V191I"], "p6": ["P36Y", "L50S"], "p7": ["Q9P"], "rev": ["Y28P", "R39K", "P72H", "H82N", "E87K", "E90A", "S103P"], "tat": ["K7R", "N24S", "K29R", "D64N", "P70S", "L74S", "P84Q"], "vif": ["R19K", "V31I", "I66V", "A152T", "N190H"], "vpr": ["E17A", "Q28H", "H45Y", "I63S", "I84T"], "vpu": ["L2S", "-6I", "K32R", "-80D", "-81D", "-82M"]}, "labels": {"aa": "INT: K14R, I84L; RT-p51: T39L, T173K, K174E, D248N, A286T, I326V, T386I, T400S, E432D, A435M; RT-p66: T39L, T173K, K174E, D248N, A286T, I326V, T386I, T400S, E432D, A435M, V548A; gp120: A3I, Q5K, A37S, E59G, N71K, T104I, -107K, -109S, -112N, -114T, -122E, -123E, -124A, E125T, T134P, K141T, K142E, N143T, A146T, N158V, N159T, N272G, N273S, N274D, T275K, R276K, K277I, G278R, I279Q, H280S, -282R, -283I, R287K, T292K, D294G, G296T, D297G, I298-, R299-, K307D, T308G, K311R, K312N, D319I, H324Q, T330S, L341I, S347T, G361E, S365G, N368D, N369K, T371C, N372T, -375E, -381G, -382N, I395V, K412E, K416R, N418S, -433G, N435A, K437Q, R448K; gp41: I24M, G78S, D110N, M115L, K122R, I130V, I135L, N145S, S165T, L191F, I210L, G221R, D247E, L254I, F263L, A268V, Q290L, V322G, H331N; nef: D38E, H40Y, A50E, A53E, E63D, E64G, S88G, C142P, E174D, I194L; p17: R43K, L46I, E62G, L78I, T81L, A107V, N124S; p2: A7-, -11A; p24: T171V, V191I; p6: P36Y, L50S; p7: Q9P; rev: Y28P, R39K, P72H, H82N, E87K, E90A, S103P; tat: K7R, N24S, K29R, D64N, P70S, L74S, P84Q; vif: R19K, V31I, I66V, A152T, N190H; vpr: E17A, Q28H, H45Y, I63S, I84T; vpu: L2S, -6I, K32R, -80D, -81D, -82M"}}}]}]}, {"name": "NODE_0000284", "node_attrs": {"div": 0.041429999999999995, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G10A", "T30C", "A152C", "C153T", "A263T", "G365A", "A425G", "T434C", "G519A", "T549A", "A562G", "G607A", "A618C", "T635C", "T641C", "C668T", "C691A", "A705-", "A706-", "C707-", "A708-", "C710-", "G712-", "T852A", "C902T", "C974T", "A1002G", "C1005G", "T1040C", "G1078C", "C1091T", "A1448C", "A1493T", "A1526G", "G1588A", "C1613T", "A1656C", "G1725A", "G1732-", "A1733-", "T1741A", "T1790C", "G1835A", "A1841G", "C1987T", "A2075C", "T2087C", "A2182G", "C2211A", "T2237A", "G2509A", "G2530A", "C2638T", "C2644T", "T2653C", "A2752G", "A2788G", "C2885T", "T2890C", "A3076T", "A3091G", "G3127A", "T3133C", "G3165T", "A3274C", "C3346T", "T3358C", "G3391A", "G3442A", "A3487G", "G3491A", "C3499T", "T3544G", "C3712T", "G3718A", "C3751A", "A3772G", "T3779C", "T4024C", "A4285G", "A4474C", "A4492C", "A4543C", "G4573A", "A4608C", "A4687G", "A4694T", "T4727A", "C4786A", "C4800T", "C4820T", "G4835T", "G4856A", "A4858T", "C4911A", "A4988C", "C5050A", "C5091T", "T5197C", "T5203C", "G5212A", "G5236A", "A5246G", "T5248A", "A5268C", "C5445T", "G5463A", "T5467A", "T5491C", "A5548G", "C5563A", "-5612T", "-5615A", "G5626-", "T5653C", "C5704T", "A5787T", "T5788A", "G5800-", "T5801-", "G5802-", "G5803-", "A5804-", "A5805-", "T5807-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817T", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5831G", "T5832G", "G5837T", "C5851T", "C5859T", "C5862T", "A5863G", "C5920T", "C6026T", "A6076T", "A6186-", "-6189C", "-6194A", "-6199T", "G6277A", "T6373A", "G6379A", "T6382C", "A6394C", "T6438A", "G6458A", "A6465C", "G6466A", "T6562C", "A6599C", "C6601G", "C6619A", "A6653G", "C6661A", "G6716A", "T6733A", "A6778T", "G6819A", "T6829C", "T6895C", "G6905A", "A6937C", "T6953-", "G6954-", "A6992-", "G7040A", "G7056A", "A7057G", "A7065G", "C7087T", "T7099A", "T7117C", "A7136C", "T7144A", "T7153-", "-7164C", "A7238G", "G7244A", "G7256A", "A7279G", "C7463A", "A7492G", "G7517A", "G7627A", "A7633T", "T7692C", "A7705G", "G7735A", "A7764G", "G7765T", "G7773A", "A7885G", "G7992A", "C8080A", "C8095A", "C8149T", "G8161A", "A8163G", "A8188G", "T8197G", "T8210C", "A8216G", "C8223T", "G8242A", "G8329A", "G8393A", "A8469C", "T8492C", "C8494A", "C8504T", "G8534A", "T8594A", "T8597C", "G8717A", "G8732A", "A8739G", "G8915C", "A8930C", "G9033-"], "INT": ["E256D", "D278A"], "RT-p51": ["T39K", "S48T", "T173A"], "RT-p66": ["T39K", "S48T", "T173A", "Y483Q"], "gp120": ["A2V", "E4G", "E74D", "K150R", "F195Y", "D202N", "K204T", "K212N", "I249L", "Q259H", "H280R", "K323E", "G351R", "W367Y", "R401E", "Q404R", "N418K", "K462E", "E464K", "V468I"], "gp41": ["V72I", "I130T", "I135L", "S157N", "N287S", "N298K", "N305D", "T307I"], "nef": ["T51N", "I133V", "I168M"], "p1": ["N9H"], "p17": ["E62K", "S72T", "K76R", "R91K", "N124K", "S125-", "S126-", "Q127-"], "p24": ["S41T", "I91V", "P92A", "G116A"], "p6": ["G16R", "G18-", "I21K"], "p7": ["Q9P", "R41K"], "pro": ["V13I", "I15V", "I93L"], "rev": ["R39K", "L78I", "L83I", "E105K", "*117E"], "tat": ["C31S", "T58A", "Q63K"], "vif": ["M8L", "K34R", "T67K", "Q83H", "Q91L", "L109M", "E134D", "A155K"], "vpr": ["N48E", "E55T"], "vpu": ["-71M", "-72G", "-77L", "-78D", "D80N"]}, "labels": {"aa": "INT: E256D, D278A; RT-p51: T39K, S48T, T173A; RT-p66: T39K, S48T, T173A, Y483Q; gp120: A2V, E4G, E74D, K150R, F195Y, D202N, K204T, K212N, I249L, Q259H, H280R, K323E, G351R, W367Y, R401E, Q404R, N418K, K462E, E464K, V468I; gp41: V72I, I130T, I135L, S157N, N287S, N298K, N305D, T307I; nef: T51N, I133V, I168M; p1: N9H; p17: E62K, S72T, K76R, R91K, N124K, S125-, S126-, Q127-; p24: S41T, I91V, P92A, G116A; p6: G16R, G18-, I21K; p7: Q9P, R41K; pro: V13I, I15V, I93L; rev: R39K, L78I, L83I, E105K, *117E; tat: C31S, T58A, Q63K; vif: M8L, K34R, T67K, Q83H, Q91L, L109M, E134D, A155K; vpr: N48E, E55T; vpu: -71M, -72G, -77L, -78D, D80N"}}, "children": [{"name": "results/subtype_trees/CRF92_C2U.nwk", "node_attrs": {"div": 0.07923, "clade_membership": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["T95C", "C96T", "A133T", "C151A", "T155G", "-280G", "C300T", "A301G", "A368G", "A418C", "G424A", "C435A", "G498C", "A509G", "A516T", "A518G", "A520C", "G524A", "G612A", "G654A", "A674G", "A697G", "G703A", "-714A", "C767T", "T858C", "A866G", "A899G", "A920G", "A932G", "T1001C", "G1139A", "G1260T", "A1263T", "T1271G", "G1301A", "A1343C", "G1355A", "A1400G", "G1404A", "A1412G", "G1419A", "A1446-", "-1452A", "-1458A", "-1459A", "C1478T", "T1481C", "G1503A", "C1535T", "A1644C", "A1657G", "C1658T", "A1659C", "-1732A", "-1733G", "A1743G", "C1749T", "C1767A", "C1768A", "A1774-", "A1781T", "-1784T", "-1785G", "-1786C", "A1793G", "C1795A", "C1831T", "C1853A", "A1855G", "A1857G", "A1920G", "A1921G", "A1966C", "G1972A", "C1985A", "C2047T", "T2062C", "C2083T", "A2122T", "G2155A", "T2257C", "C2266T", "G2273A", "A2419G", "G2422A", "G2431A", "G2462A", "C2467T", "G2470A", "C2575T", "C2596T", "A2611G", "A2612G", "T2620C", "A2698G", "G2707A", "C2720T", "A2722G", "A2734G", "A2743C", "T2800C", "C2806T", "T2845A", "A2929G", "A2938G", "G2951A", "C2953T", "A2956G", "G3016A", "A3043G", "A3079G", "G3085A", "G3094A", "C3095A", "A3097T", "A3103G", "A3193G", "A3230T", "T3349C", "C3376T", "G3398C", "T3469C", "A3524G", "T3530C", "G3544A", "T3551C", "A3574G", "A3616G", "A3755T", "T3778C", "G3796A", "G3907A", "G3916A", "A4027G", "C4079T", "A4106C", "T4165C", "A4183G", "C4210T", "C4258T", "C4288T", "G4354A", "G4366A", "A4399C", "T4412C", "A4498G", "T4579C", "A4646T", "G4685A", "T4769A", "G4861A", "C4899A", "G5036A", "A5085C", "G5086A", "G5114C", "G5225A", "A5233G", "T5239C", "A5282C", "A5285C", "C5303T", "T5311C", "G5359-", "A5375G", "C5412T", "T5415C", "T5436C", "G5437C", "T5451C", "A5471T", "C5495A", "A5496C", "C5513A", "T5568C", "A5575G", "T5611A", "A5613T", "-5614T", "T5621-", "A5622-", "G5630C", "A5703G", "A5707T", "G5717A", "A5720G", "T5789C", "-5811G", "T5852A", "A5866C", "C5878T", "A6019G", "A6020G", "A6022G", "G6028A", "G6121A", "G6133A", "C6145T", "T6163C", "T6178-", "C6190T", "-6200A", "-6206A", "-6210T", "-6213C", "-6214G", "-6215A", "-6216T", "-6217G", "-6218G", "-6219A", "-6220G", "-6221C", "-6222C", "-6223A", "-6225G", "-6226A", "C6241T", "A6268G", "T6271C", "G6274A", 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"A119E", "G123E", "V128-"], "p24": ["A177S", "T178S", "V230I"], "p6": ["P5L", "-18E", "P23S", "P30K", "E34D", "L35P", "-36A", "T39D", "S51L"], "p7": ["V13I"], "pro": ["L19M", "K20R", "K41R", "L63T"], "rev": ["I18T", "E57G", "C63L", "A68E", "P72S", "Q74P", "H82C", "S92P", "Q95E", "V97L", "Q101E", "S103P", "G104E", "S106P", "T114D"], "tat": ["T40N", "S46Y", "N67D", "S87Q"], "vif": ["D61E", "R92K", "K158R", "R167Q", "K176N"], "vpr": ["A4P", "G41S", "I60L", "I61L"], "vpu": ["-2I", "-3Y", "R37K", "K38R", "L82*"]}, "labels": {"aa": "INT: S17N, I84M, K111Q; RT-p51: V60I, D123N, D250E, A286T, Q334N, S379C, A435L; RT-p66: V60I, D123N, D250E, A286T, I329L, Q334N, S379C, A435L, M452L, V466I, T477A; gp120: I56V, -105N, -106A, N113-, -121M, -122E, -123P, -124G, K141Q, I173M, N212T, E240K, N267E, N272G, Q300K, S306N, K312N, Q316K, R322Q, N327-, N334Q, S336H, S365R, -370N, K412R, -436N; gp41: K77Q, S101T, D109H, E110D, S125N, R133Q, S138A, K154S, L191I, I193V, I222T, V238A, N239A, A245F, S256L, I264V, R276Q, G286K, L296I, C326F, F340L; nef: Q35R, K39R, H40R, S45T, A50G, C55V, G83A, C163S, Q170L, I194V; p1: I5L, H9R, K10Q; p17: K28T, R30K, L34I, E55L, I61L, K62T, A119E, G123E, V128-; p24: A177S, T178S, V230I; p6: P5L, -18E, P23S, P30K, E34D, L35P, -36A, T39D, S51L; p7: V13I; pro: L19M, K20R, K41R, L63T; rev: I18T, E57G, C63L, A68E, P72S, Q74P, H82C, S92P, Q95E, V97L, Q101E, S103P, G104E, S106P, T114D; tat: T40N, S46Y, N67D, S87Q; vif: D61E, R92K, K158R, R167Q, K176N; vpr: A4P, G41S, I60L, I61L; vpu: -2I, -3Y, R37K, K38R, L82*", "clade": "CRF92_C2U"}}, "children": [{"name": "CRF92_C2U_NODE_0000001", "node_attrs": {"div": 0.08444, "clade_membership": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["-305T", "A380C", "G480A", "T824C", "T1322C", "-1774G", "A1832G", "A1834C", "A1985G", "C1986T", "G2980A", "A3037G", "A3388G", "C3545T", "G3808A", "G3825A", "A3955G", "A4376G", "C4428T", "A4952T", "G5267A", "C5282T", "T5356C", "A5431G", "G5629T", "-5791T", "A5795C", 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"node_attrs": {"div": 0.14259, "accession": "MF372647", "clade_membership": {"value": "CRF92_C2U"}, "country": {"value": "CD"}, "date": {"value": 2008.0}, "Strain_name": {"value": "DRC699"}, "LANL_subtype": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["A177T", "A224G", "T227A", "G282A", "A356G", "C362T", "T377C", "A389G", "C418A", "A428G", "C496G", "C498G", "A500T", "T516C", "C520A", "A529T", "T539C", "G562A", "T567C", "G582T", "A612G", "G615A", "C618A", "A632T", "G644A", "C669A", "A676G", "A677C", "A678G", "G697A", "A700G", "T746C", "A764G", "A785G", "T788C", "A797G", "A809C", "C926T", "G932A", "C1001A", "T1004G", "C1013G", "A1025G", "A1089G", "G1109A", "A1217G", "G1232A", "G1271A", "A1301G", "C1316T", "C1331A", "T1334C", "T1403C", "C1439T", "T1478C", "C1517T", "G1543A", "T1616C", "T1646A", "T1658G", "G1664A", "T1681C", "C1692T", "C1693T", "C1724T", "A1725G", "G1733A", "G1743A", "C1756T", "G1760T", "A1768G", "T1792C", "A1804G", "A1819G", "C1865T", "G1921A", 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"C7959T", "G7964A", "A7998G", "C8005G", "A8029G", "A8051C", "A8055C", "T8060A", "G8061C", "G8079A", "C8103T", "C8106T", "C8112T", "A8118G", "A8119C", "C8122A", "A8130T", "G8131C", "T8137A", "A8189C", "A8204G", "G8212A", "T8218C", "A8222C", "T8265C", "A8269G", "A8276T", "T8278C", "T8280G", "C8291A", "-8330C", "C8331T", "-8332G", "G8402A", "G8414T", "A8441G", "T8456G", "G8461A", "C8477T", "G8491C", "C8492A", "T8507A", "G8516A", "G8531T", "A8537C", "T8546C", "T8636A", "A8653G", "A8701T", "A8732G", "C8775T", "A8777G", "G8787A", "A8788G", "A8793G", "C8810T", "A8812C", "G8830A", "C8831G", "G8846A", "G8864A", "G8868C", "T8903C", "C8904A", "C8915T", "C8921T", "C8966T", "G8968A", "G8978C", "C9039T"], "INT": ["M84I", "E157Q", "K160Q", "F181L"], "RT-p51": ["K39R", "E40D", "K174R", "I178L", "Q197L", "A200E", "F214L", "Q245N", "D248E", "C379S"], "RT-p66": ["K39R", "E40D", "K174R", "I178L", "Q197L", "A200E", "F214L", "Q245N", "D248E", "L329I", "C379S", "A446S", "S468H", "D488E"], "gp120": ["N52D", "V56L", "V57D", "E59-", "V61I", "N105D", "A106Y", "-107V", "N108I", "T110N", "-111Q", "-112T", "-113D", "-114R", "-115N", "-117T", "-118K", "-119L", "-120E", "M121V", "F131Y", "Q141K", "K143Q", "A146S", "V154M", "P155Q", "D157S", "N159Y", "N161T", "S162-", "M173V", "N202D", "N213K", "K240E", "I243V", "A253T", "E265K", "T269M", "K277Q", "T308E", "E309Q", "A318S", "Q322L", "F325Y", "L341P", "R351G", "G361E", "-368E", "-372S", "-373S", "-374N", "-375S", "-376S", "-377N", "-378S", "-379N", "-384D", "-385T", "E401G", "R404K", "N414Y", "N432K", "-433V", "N434T", "N435S", "E481D"], "gp41": ["L4F", "A14M", "Q77R", "T96D", "P98K", "S102N", "N105S", "S107T", "Q108Y", "H109N", "D110E", "R122T", "N129D", "Q133E", "E136K", "N140L", "K144N", "Q147K", "L152M", "S154K", "A156T", "V194I", "F206L", "N212S", "G215E", "P219L", "G221R", "D232G", "N251T", "C253T", "R259Q", "A267V", "A268V", "T270I", "E272G", "I296L", "I301V", "I307L", "V321A", "I325F", "F326C", "L330I", "A343L"], "nef": ["M20I", "E24D", "D38E", "R40H", "G50A", "E63D", "E65D", "D98E", "K104R", "Y120F", "D149S", "K151E", "N157T", "S163K", "E176P"], "p17": ["T28K", "A54G", "L55D", "T62K", "Q65L", "R76K", "A83S", "V94I", "E99D", "Q112K", "K114S", "K122R", "-128V"], "p24": ["S120G"], "p6": ["L1P", "R16G", "P25L", "-26N", "K27-", "K30R", "L38S", "K42R", "N47S"], "p7": ["R26K"], "pro": ["M89I"], "rev": ["E10A", "R17K", "H53D", "S61G", "E68A", "E69D", "V71D", "T91P", "P92T", "E95Q", "D114A"], "tat": ["E9A", "N24T", "Y32L", "Q35P", "N40T", "L68S", "P70S", "I77V", "D80N", "P84S"], "vif": ["V7A", "R34K", "K36D", "G37K", "F39W", "V65I", "H73N", "D78E", "H83Q", "K92R", "R93K", "Q136P", "N140T", "K141Q", "T151K", "A152V", "R158K", "R181K"], "vpr": ["V31L", "H45Y", "E48D", "E58Q", "Q77L", "R85P", "S94R"], "vpu": ["I2N", "L5A", "-6I", "V7S", "A8-", "L16F", "I18L", "V21I", "V22A", "V26A", "R31K", "L33W", "R35K", "Q36R", "K37E", "E63A", "E66D", "M71-", "G72-", "L77-", "D78-", "V79-", "N80D", "N81H", "*82L"]}, "labels": {"aa": "INT: M84I, E157Q, K160Q, F181L; RT-p51: K39R, E40D, K174R, I178L, Q197L, A200E, F214L, Q245N, D248E, C379S; RT-p66: K39R, E40D, K174R, I178L, Q197L, A200E, F214L, Q245N, D248E, L329I, C379S, A446S, S468H, D488E; gp120: N52D, V56L, V57D, E59-, V61I, N105D, A106Y, -107V, N108I, T110N, -111Q, -112T, -113D, -114R, -115N, -117T, -118K, -119L, -120E, M121V, F131Y, Q141K, K143Q, A146S, V154M, P155Q, D157S, N159Y, N161T, S162-, M173V, N202D, N213K, K240E, I243V, A253T, E265K, T269M, K277Q, T308E, E309Q, A318S, Q322L, F325Y, L341P, R351G, G361E, -368E, -372S, -373S, -374N, -375S, -376S, -377N, -378S, -379N, -384D, -385T, E401G, R404K, N414Y, N432K, -433V, N434T, N435S, E481D; gp41: L4F, A14M, Q77R, T96D, P98K, S102N, N105S, S107T, Q108Y, H109N, D110E, R122T, N129D, Q133E, E136K, N140L, K144N, Q147K, L152M, S154K, A156T, V194I, F206L, N212S, G215E, P219L, G221R, D232G, N251T, C253T, R259Q, A267V, A268V, T270I, E272G, I296L, I301V, I307L, V321A, I325F, F326C, L330I, A343L; nef: M20I, E24D, D38E, R40H, G50A, E63D, E65D, D98E, K104R, Y120F, D149S, K151E, N157T, S163K, E176P; p17: T28K, A54G, L55D, T62K, Q65L, R76K, A83S, V94I, E99D, Q112K, K114S, K122R, -128V; p24: S120G; p6: L1P, R16G, P25L, -26N, K27-, K30R, L38S, K42R, N47S; p7: R26K; pro: M89I; rev: E10A, R17K, H53D, S61G, E68A, E69D, V71D, T91P, P92T, E95Q, D114A; tat: E9A, N24T, Y32L, Q35P, N40T, L68S, P70S, I77V, D80N, P84S; vif: V7A, R34K, K36D, G37K, F39W, V65I, H73N, D78E, H83Q, K92R, R93K, Q136P, N140T, K141Q, T151K, A152V, R158K, R181K; vpr: V31L, H45Y, E48D, E58Q, Q77L, R85P, S94R; vpu: I2N, L5A, -6I, V7S, A8-, L16F, I18L, V21I, V22A, V26A, R31K, L33W, R35K, Q36R, K37E, E63A, E66D, M71-, G72-, L77-, D78-, V79-, N80D, N81H, *82L"}}}, {"name": "KU168263", "node_attrs": {"div": 0.12052, "accession": "KU168263", "clade_membership": {"value": "CRF92_C2U"}, "country": {"value": "x"}, "date": {"value": 2004.0}, "Strain_name": {"value": "LA08SySa"}, "LANL_subtype": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["G92A", "T117G", "T200C", "A216G", "A304T", "T377A", "A411C", "A412G", "G413A", "A424G", "G425A", "C434T", "A435C", "A499T", "G509A", "A584C", "A612C", "A613C", "G614A", "A617G", "A619G", "A654C", "G696A", "-708A", "-709G", "-710A", "-711G", "-712A", "-713A", "G717A", "G791A", "G866A", "A869G", "G1002C", "T1003C", "T1166C", "A1205G", "T1244C", "A1259G", "A1346G", "A1355G", "A1370G", "T1385C", "G1430A", "A1461G", "C1481T", "G1498A", "A1525G", "C1541A", "T1613C", "T1646C", "T1658A", "T1676C", "C1680A", "A1709G", "G1727C", "T1749C", "G1772A", "T1781C", "C1790T", "G1852A", "A1918G", "A2032G", "A2038C", "T2047C", "T2104C", "G2156A", "G2173A", "A2233G", "T2266C", "C2420T", "A2431G", "A2498G", "T2608C", "G2611A", "C2615A", "A2645G", "G2656A", "G2698A", "A2727G", "C2740T", "T2758C", "G2833A", "G2837A", "A2846G", "G2847A", "A2915G", "G2929C", "A2937G", "A2951G", "C2968T", "C2978T", "T3059G", "C3067T", "A3080C", "T3118C", "G3221T", "C3266T", "A3280G", "C3285T", "A3286G", "T3424C", "G3427A", "C3500G", "G3523A", "G3524A", "A3535G", "T3550C", "C3649T", "A3655G", "A3682G", "A3684G", "G3685A", "T3856C", "A3866G", "A3868G", "C3908A", "A3910G", "G3989A", "C4024T", "A4057G", "T4075C", "T4135C", "G4145A", "C4146A", "T4207C", "A4273G", "C4381T", "A4411G", "A4525G", "A4531G", "C4543A", "C4569T", "G4636A", "G4677A", "T4694G", "A4733C", "A4735G", "A4737G", "A4781G", "A4786C", "T4932G", "T4959C", "G4986A", "A5046G", "A5058C", "A5122G", "C5214T", "C5242A", "T5292G", "G5296A", "A5299G", "T5303C", "T5357C", "-5359T", "A5362G", "C5393T", "A5400G", "G5403T", "C5406T", "T5430A", "A5433T", "A5444C", "T5448G", "T5457C", "A5462G", "A5467T", "T5471A", "C5530T", "A5537G", "A5547C", "C5551T", "G5561A", "A5587G", "A5623G", "-5626G", "A5655T", "A5733G", "T5739G", "A5781C", "G5794A", "-5799G", "-5800G", "-5801T", "-5802G", "-5803G", "-5804A", "-5805A", "-5806A", "-5807T", "-5809G", "-5810G", "G5812A", "T5813A", "G5815C", "A5816T", "T5819G", "G5821C", "G5822T", "G5823T", "C5824T", "A5825T", "T5826G", "C5827G", "T5828A", "A5830G", "G5831C", "G5832T", "C5833A", "T5834A", "T5843C", "T5870C", "T5944C", "G5948T", "A5995T", "A6066G", "A6092G", "-6167A", "-6170G", "-6171C", "-6172A", "-6174A", "-6175G", "-6178G", "T6184A", "-6186G", "C6189A", "T6193A", "-6195C", "-6196C", "A6197G", "-6198G", "-6201A", "-6202C", "-6203T", "-6207G", "-6208C", "-6209A", "T6210C", "-6212A", "A6232G", "A6277C", "A6279G", "A6282G", "T6287C", "T6289G", "T6295G", "C6305T", "A6320C", "T6322-", "G6323-", "A6324-", "G6336A", "T6341A", "A6342G", "G6345A", "G6346T", "A6353C", "G6403C", "A6459G", "G6463A", "A6481G", "C6489G", "A6490G", "C6563T", "C6612T", "A6616G", "G6631C", "T6643A", "A6648G", "C6660G", "A6683G", "-6689G", "A6723T", "A6751G", "T6760C", "A6764C", "G6806A", "C6807A", "T6808A", "A6809G", "A6810T", "T6815C", "T6849C", "A6907G", "A6947G", "G6948A", "A6952T", "C6966-", "-6989G", "-6990A", "-6991C", "-6992A", "-6994C", "-6999A", "-7000C", "-7002G", "-7003C", "G7004A", "-7005C", "C7008A", "G7089A", "C7096T", "A7106G", "C7124A", "A7148G", "-7153A", "A7241G", "A7268G", "A7312C", "T7403C", "A7463C", "C7605A", "A7626T", "A7676G", "T7681G", "T7682C", "C7690A", "G7702T", "G7705A", "T7748C", "G7754T", "G7790A", "A7791G", "T7796A", "T7801C", "A7818G", "A7873G", "T7876G", "A7937C", "G7995A", "G8017A", "C8020A", "C8035T", "A8076G", "G8085C", "T8092A", "T8094G", "G8114C", "G8135A", "A8143G", "C8155T", "A8159G", "A8160G", "T8203C", "A8219T", "C8220A", "A8255G", "A8276G", "T8277G", "C8290A", "T8293C", "T8296C", "C8300A", "C8301A", "C8321T", "G8328C", "A8329G", "C8331-", "T8333-", "T8334-", "T8375A", "T8387A", "A8396C", "G8446A", "T8462G", "A8494C", "C8510T", "C8552T", "A8573G", "G8594A", "T8595A", "C8597A", "C8688A", "T8770A", "T8813C", "T8843C", "G8846C", "T8851A", "G8905A", "G8922T", "G8945C", "T8948C", "G9082A", "T9115C", "G9177A"], "INT": ["I31V", "L45M", "V72I", "A124N", "D256E", "A265V"], "RT-p51": ["V21I", "I135V", "M184V", "K211R", "D248N", "S251D", "I274V", "Q278H", "K281R", "T286A", "S322A", "I329L", "A376S", "T397M"], "RT-p66": ["V21I", "I135V", "M184V", "K211R", "D248N", "S251D", "I274V", "Q278H", "K281R", "T286A", "S322A", "A376S", "T397M", "L469V", "A477T", "K530R"], "gp120": ["A32S", "N71S", "I80V", "-107E", "N108M", "-117L", "-118T", "-119G", "-120I", "I126M", "Q141H", "K142R", "K143R", "Y145Q", "L151F", "I156L", "D157-", "N159D", "N167H", "E183D", "N202S", "T212R", "A253V", "E265R", "T269R", "K277E", "I279V", "Y290F", "D294A", "H302Y", "N304L", "K307R", "A318K", "K319V", "I332T", "R365D", "Y367D", "-368T", "T371-", "-383S", "-384T", "-385N", "R412K", "K418V", "L424I", "N432E", "-433G", "N437T", "I463V", "K472E"], "gp41": ["M54L", "I72M", "T96A", "T101N", "Q108L", "N125D", "N126K", "Y127H", "N129K", "Q133H", "A151S", "D163S", "S165T", "K172R", "I191M", "N212H", "R231K", "H258R", "R261T", "F263L", "V264G", "V271L", "K286G", "T306Y", "I318V", "I325G", "P333N", "R342T", "A343-", "L344-"], "nef": ["E18D", "R35Q", "N51T", "F85I", "H116N", "F143Y", "L170Q", "E176A", "S188H", "V194F", "E201D"], "p17": ["D14E", "K26R", "K30R", "I34L", "E93P", "K95R", "I107L", "D121S", "K124R", "-125E", "-126K", "-127I"], "p2": ["-10V", "I13-"], "p24": ["V91P"], "p6": ["L1I", "R16-", "F17S", "E18F", "K21E", "T22K", "S23A", "S24P", "P25S", "-26P"], "p7": ["R11K", "K20R"], "rev": ["S8G", "E11A", "V16I", "K30T", "K39R", "G57S", "L63F", "E79D", "C82R", "C89S", "G96Q", "L97S", "S99G", "P103S", "E104G"], "tat": ["P6L", "E9D", "E19D", "N23T", "N24K", "K29R", "S31C", "R52W", "Q54R", "R57S", "P59S", "S62N", "K71E", "Q76H"], "vif": ["R17K", "V31I", "K50R", "I51V", "K67T", "Q105K", "S116A", "D134N", "I154V", "R158Q", "R159I", "K179R"], "vpr": ["P37L", "I63S", "I84T", "R85L", "Q86R"], "vpu": ["L5V", "A8S", "E58D", "E63T", "-68G", "-69N", "-70L", "M71R", "G72L", "-73L", "-74D", "-75A", "-76N", "V79A"]}, "labels": {"aa": "INT: I31V, L45M, V72I, A124N, D256E, A265V; RT-p51: V21I, I135V, M184V, K211R, D248N, S251D, I274V, Q278H, K281R, T286A, S322A, I329L, A376S, T397M; RT-p66: V21I, I135V, M184V, K211R, D248N, S251D, I274V, Q278H, K281R, T286A, S322A, A376S, T397M, L469V, A477T, K530R; gp120: A32S, N71S, I80V, -107E, N108M, -117L, -118T, -119G, -120I, I126M, Q141H, K142R, K143R, Y145Q, L151F, I156L, D157-, N159D, N167H, E183D, N202S, T212R, A253V, E265R, T269R, K277E, I279V, Y290F, D294A, H302Y, N304L, K307R, A318K, K319V, I332T, R365D, Y367D, -368T, T371-, -383S, -384T, -385N, R412K, K418V, L424I, N432E, -433G, N437T, I463V, K472E; gp41: M54L, I72M, T96A, T101N, Q108L, N125D, N126K, Y127H, N129K, Q133H, A151S, D163S, S165T, K172R, I191M, N212H, R231K, H258R, R261T, F263L, V264G, V271L, K286G, T306Y, I318V, I325G, P333N, R342T, A343-, L344-; nef: E18D, R35Q, N51T, F85I, H116N, F143Y, L170Q, E176A, S188H, V194F, E201D; p17: D14E, K26R, K30R, I34L, E93P, K95R, I107L, D121S, K124R, -125E, -126K, -127I; p2: -10V, I13-; p24: V91P; p6: L1I, R16-, F17S, E18F, K21E, T22K, S23A, S24P, P25S, -26P; p7: R11K, K20R; rev: S8G, E11A, V16I, K30T, K39R, G57S, L63F, E79D, C82R, C89S, G96Q, L97S, S99G, P103S, E104G; tat: P6L, E9D, E19D, N23T, N24K, K29R, S31C, R52W, Q54R, R57S, P59S, S62N, K71E, Q76H; vif: R17K, V31I, K50R, I51V, K67T, Q105K, S116A, D134N, I154V, R158Q, R159I, K179R; vpr: P37L, I63S, I84T, R85L, Q86R; vpu: L5V, A8S, E58D, E63T, -68G, -69N, -70L, M71R, G72L, -73L, -74D, -75A, -76N, V79A"}}}]}, {"name": "CRF92_C2U_NODE_0000002", "node_attrs": {"div": 0.08038, "clade_membership": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["C362G", "A1843G", "T3946C", "A5059G", "A5418G", "T5817A", "C5824A", "C6007T", "G6251A", "G6605A", "C6777G", "C7016A", "C7170-", "T8209C", "A8453G", "G8487T", "A8604G"], "gp120": ["D251N", "N304I", "K307G", "T308S", "I332V", "L388I", "K418I"], "gp41": ["N166K"], "nef": ["A49S", "S88G"], "p17": ["E93K", "K95Q", "D121G"], "p6": ["T22A"], "tat": ["Y32F"], "vpr": ["T55A"], "vpu": ["-70E", "-73N"]}, "labels": {"aa": "gp120: D251N, N304I, K307G, T308S, I332V, L388I, K418I; gp41: N166K; nef: A49S, S88G; p17: E93K, K95Q, D121G; p6: T22A; tat: Y32F; vpr: T55A; vpu: -70E, -73N"}}, "children": [{"name": "CRF92_C2U_NODE_0000003", "node_attrs": {"div": 0.09808, "clade_membership": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "A215G", "A302C", "A304-", "G317A", "A356G", "A369G", "G378C", "C379A", "A513C", "T516A", "G518A", "C525A", "A527G", "-705A", "-706A", "-708A", "-709C", "-710C", "-711A", "-712G", "-713T", "A714-", "A715-", "G716-", "G717-", "T718-", "C719-", "A720-", "G721-", "T722-", "G771T", "C1175T", "C1343T", "A1475G", "G1476A", "C1610T", "C1615A", "T1653C", "G1663A", "G1687A", "G1760A", "A1770-", "G1773-", "T1796C", "A1903C", "A1918G", "G1920A", "G2042A", "A2059G", "A2063C", "T2104C", "C2257T", "C2263T", "G2612A", "C2671T", "G2704A", "T2737C", "T3132G", "A3136G", "T3197C", "G3211A", "A3229G", "T3399C", "C3415T", "G3439A", "T3644A", "A3816G", "G3859A", "T3865C", "C4165T", "A4231G", "T4537A", "A4538G", "G4695A", "C4757T", "A4787G", "A4900G", "G4982T", "T5292G", "T5314C", "T5354-", "A5355-", "T5356-", "T5357-", "C5358-", "A5362T", "A5400G", "G5546A", "A5547G", "C5549T", "C5551G", "A5555C", "A5652G", "G5699A", "C5792G", "A5795G", "C5797A", "-5799T", "-5800G", "-5801T", "-5802C", "-5803A", "-5804A", "A5856C", "T5857A", "T5862C", "G5863A", "A5907G", "A5911G", "T5951C", "A5955C", "G5956A", "A6030C", "A6059G", "A6179-", "T6181-", "A6185-", "A6188-", "A6191-", "A6192-", "A6197-", "T6395A", "T6511C", "G6526A", "G6593A", "A6616T", "A6648G", "A6649C", "T6688-", "T6690-", "A6691-", "C6692-", "-6697A", "-6698C", "-6699A", "-6701A", "-6702T", "A6775C", "A6789G", "A6796G", "C6854G", "C6860A", "A6861G", "C6875T", "G6894T", "C6895G", "G6906A", "C6919T", "G6940A", "-6956T", "-6958T", "-6959A", "-6960A", "-6961T", "-6965A", "-6978A", "-6982G", "-6983T", "-6984C", "-6988T", "-6990A", "-6991C", "-6992A", "-6993C", "-6994A", "-6995A", "-6996A", "G7054A", "T7114C", "-7153G", "T7156C", "A7463T", "A7627C", "T7642G", "C7690A", "C7747A", "A7773G", "T7801G", "T7864A", "G7885A", "A7962G", "A7998G", "A8006G", "T8007G", "G8017A", "C8047T", "C8062T", "G8079T", "G8105A", "A8143G", "G8245A", "C8294A", "C8476T", "C8492T", "G8531T", "C8590G", "C8869A", "G8871C", "G8873C", "G8875A", "C8904A", "C8915T", "G8917C", "G8922C", "T8923G", "C9108T"], "INT": ["K14R", "N254K", "S255G"], "RT-p51": ["A173T", "L435P"], "RT-p66": ["A173T", "L435P", "L517I"], "gp120": ["N1T", "K18R", "Y33H", "E59A", "K69E", "V133I", "N159D", "N161S", "S181T", "E247K", "K254N", "H259Q", "E265S", "R280H", "N312S", "Q334E", "H336S", "S347M", "R351K", "-433K", "N437T"], "gp41": ["M54L", "D113E", "N129K", "D148E", "N157S", "E220G", "D232G", "I235G", "R259L", "A268T", "H331N"], "nef": ["T45I", "E63D", "A83G", "E177H", "R178K", "R192T", "V194R"], "p1": ["G11E"], "p17": ["K12E", "A15Q", "L55Q", "I60L", "L61I", "L64M", "-125T"], "p24": ["A14S"], "p6": ["S3N", "L5P", "K27-"], "p7": ["G4S", "T50N"], "pro": ["E35D", "R41K", "V82I", "M89L"], "rev": ["E11R", "K14Q", "H53R", "G57S", "P67S", "S86N", "S99G"], "tat": ["A21P", "R57K", "A58V", "P59A", "Q60P", "K85E"], "vif": ["K36N", "G37R", "Q105R", "R132S"], "vpr": ["I63S", "I84L", "Q86-", "R87-"], "vpu": ["I2L", "R31K", "E60D", "L61T", "S62-", "-69V", "-74L", "-75R", "-76L", "*83Y"]}, "labels": {"aa": "INT: K14R, N254K, S255G; RT-p51: A173T, L435P; RT-p66: A173T, L435P, L517I; gp120: N1T, K18R, Y33H, E59A, K69E, V133I, N159D, N161S, S181T, E247K, K254N, H259Q, E265S, R280H, N312S, Q334E, H336S, S347M, R351K, -433K, N437T; gp41: M54L, D113E, N129K, D148E, N157S, E220G, D232G, I235G, R259L, A268T, H331N; nef: T45I, E63D, A83G, E177H, R178K, R192T, V194R; p1: G11E; p17: K12E, A15Q, L55Q, I60L, L61I, L64M, -125T; p24: A14S; p6: S3N, L5P, K27-; p7: G4S, T50N; pro: E35D, R41K, V82I, M89L; rev: E11R, K14Q, H53R, G57S, P67S, S86N, S99G; tat: A21P, R57K, A58V, P59A, Q60P, K85E; vif: K36N, G37R, Q105R, R132S; vpr: I63S, I84L, Q86-, R87-; vpu: I2L, R31K, E60D, L61T, S62-, -69V, -74L, -75R, -76L, *83Y"}}, "children": [{"name": "MF372650", "node_attrs": {"div": 0.13255, "accession": "MF372650", "clade_membership": {"value": "CRF92_C2U"}, "country": {"value": "CD"}, "date": {"value": 2012.0}, "Strain_name": {"value": "VIR90"}, "LANL_subtype": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["G155T", "G158-", "T159-", "C160-", "A161-", "G162-", "T163-", "G164-", "T165-", "G166-", "G167-", "A168-", "G178C", "G362T", "A374G", "A423C", "C434T", "A461C", "T486A", "A488G", "A500G", "G509A", "A512G", "G579A", "A585G", "C586T", "A592G", "T593G", "A607G", "G629A", "A656G", "A663G", "C669A", "A680C", "A700G", "-707C", "C749T", "G866A", "T902C", "T978A", "A980G", "T1004A", "A1046G", "A1101G", "T1148C", "A1205G", "C1243T", "T1260G", "G1271T", "T1325C", "A1355G", "G1495A", "C1654A", "T1679C", "A1735G", "T1752C", "C1756T", "A1760C", "A1771-", "G1772-", "C1775-", "A1777G", "C1789A", "C1826A", "A1832C", "G1855A", "T1910A", "G1912A", "G1921A", "A1932G", "T1978G", "T1997G", "G1998A", "A2002G", "T2013C", "A2056C", "C2062T", "A2188C", "A2329G", "C2485T", "A2665G", "A2686G", "A2715C", "G2734A", "C2770A", "G2837A", "A2842G", "A2925G", "G2938A", "T2953C", "G2956A", "A2974G", "C2975A", "A3080T", "A3127G", "G3132A", "T3170A", "A3211C", "T3230A", "C3232T", "C3322T", "T3376C", "A3391G", "A3395T", "C3405T", "T3424C", "A3435G", "A3454G", "C3469T", "A3489G", "C3500T", "A3544G", "C3545T", "G3556A", "G3631A", "A3651G", "A3676C", "A3727G", "T3754C", "T3755A", "G3772A", "A3775G", "G3808A", "G3825A", "A3854G", "A3862C", "T3954C", "A3985G", "C4132T", "A4178G", "A4354G", "A4376G", "C4381T", "C4396T", "A4433G", "G4549A", "C4576A", "A4577C", "C4579T", "C4667T", "A4684G", "G4687A", "G4696A", "T4761G", "G4774T", "A4775G", "T4820A", "C4890G", "C4988A", "T5062G", "T5078C", "T5091C", "A5093G", "A5096T", "G5128A", "G5167A", "G5257A", "T5260C", "A5272G", "A5290G", "A5336T", "A5345G", "G5375A", "C5406T", "T5412G", "A5433T", "C5435A", "A5453T", "A5462T", "A5463T", "A5467T", "C5491T", "A5495G", "C5602T", "A5611C", "T5617A", "-5620C", "A5623-", "T5624-", "A5625-", "G5629T", "C5651T", "G5703A", "C5727T", "A5781G", "-5805C", "-5809C", "-5810T", "T5843C", "C5856T", "C5869A", "A5947G", "C5955T", "C6010A", "A6013C", "T6046C", "T6145A", "-6167G", "-6170C", "-6171T", "-6172A", "-6173A", "-6174A", "-6175G", "-6178G", "-6179G", "-6180C", "-6181C", "-6185G", "-6186C", "-6188G", "-6191C", "-6192C", "-6195C", "-6196T", "-6197T", "-6198C", "-6201C", "-6202T", "-6203G", "-6204T", "-6205T", "-6207A", "-6208T", "-6209C", "-6211A", "-6212A", "G6268A", "A6292G", "G6303A", "A6438T", "A6461G", "A6462C", "G6463C", "T6551C", "G6569A", "A6572G", "A6576G", "T6592C", "A6594G", "A6614T", "G6638A", "T6658C", "C6660T", "A6661G", "G6693-", "-6700C", "C6721T", "T6722G", "A6723C", "T6724A", "G6725A", "A6728G", "C6729A", "A6733C", "T6758C", "T6763C", "A6800G", "A6810G", "T6838C", "G6841A", "A6848G", "G6850T", "C6874T", "A6884G", "G6935A", "G6936A", "A6947C", "G6948A", "C6951T", "-6957T", "-6962A", "-6963T", "-6964T", "C6966G", "-6967T", "-6968A", "-6969G", "-6970T", "-6971G", "-6972A", "-6973T", "-6974G", "-6975C", "-6976A", "-6977G", "-6979C", "-6980C", "-6981A", "-6989A", "-6997T", "-6998G", "-6999G", "-7000G", "-7001G", "-7002A", "-7003T", "-7005A", "C7008G", "C7009G", "A7056G", "G7065A", "A7094G", "C7101A", "A7113G", "A7151C", "A7160G", "-7162G", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7171-", "T7325C", "G7366A", "A7396G", "A7427G", "G7459C", "A7487G", "C7605A", "T7609C", "C7625T", "G7660A", "A7673G", "G7717A", "G7790A", "T7796A", "A7873G", "T7912A", "T7930C", "A7931C", "A7989T", "T8008A", "A8029G", "G8030A", "C8035G", "A8055G", "A8111G", "A8118G", "T8182G", "C8210A", "T8215A", "C8221T", "T8239A", "A8246G", "-8330C", "C8331T", "A8378G", "A8388G", "G8402A", "G8412A", "A8413G", "A8475G", "A8486C", "A8537C", "T8543C", "A8555G", "G8588A", "C8597T", "G8666T", "A8793G", "A8804G", "G8807A", "A8812C", "A8815T", "A8823G", "G8830A", "A8844G", "T8847A", "G8914A", "A8954G", "G9000T", "A9005G", "T9012C", "T9014C", "T9029-", "-9033G", "A9095G", "G9138A"], "INT": ["N27D", "I60T", "I135V", "I201V", "I220V", "I268L"], "RT-p51": ["K174Q", "E207A", "D248N", "K277R", "P294T", "I329L", "F346Y", "S359T", "C379S", "I434L", "A437V"], "RT-p66": ["K174Q", "E207A", "D248N", "K277R", "P294T", "F346Y", "S359T", "C379S", "I434L", "A437V", "N447S", "K465R", "N519S", "K527N", "S554T"], "gp120": ["T1I", "G4D", "N5K", "E34V", "N52K", "N105D", "-107G", "R150K", "Y195F", "K203A", "E239K", "K240E", "E241G", "K247R", "N254Y", "E262K", "T269M", "A291T", "T292E", "D294I", "K316E", "K319R", "T344A", "G361N", "R365H", "T366I", "Y367F", "-368N", "N369I", "N370S", "T371-", "-373S", "-374D", "-375A", "-376D", "-377Q", "-378S", "-379N", "-380T", "-381N", "-382G", "-383D", "-384D", "-385R", "E401G", "R404Q", "N414D", "T416K", "N420S", "K433R", "N436E", "E438-", "T439-"], "gp41": ["F8L", "N42D", "Q52H", "I62V", "I72M", "T101N", "Q108Y", "I124V", "D163N", "S165T", "I210L", "Q229L", "A243T", "N251S", "T270A", "E272G", "T315A", "A343L"], "nef": ["I16V", "M20I", "E24R", "I43L", "I45V", "E65D", "E108D", "K151E", "N157T", "E158V", "N161D", "S163N", "M168V", "C169S", "R191H"], "p1": ["S8H"], "p17": ["K30Q", "E42D", "L51M", "V82I", "T84V", "Y86W", "K91R", "I107M", "K110E", "Q112K", "K122R", "K124N"], "p24": ["L83M", "I124V", "T171I", "S177A", "E180D"], "p6": ["E19G", "S24P", "P25L", "-26N", "K31R", "K33P", "D34A", "P35H", "A36-", "P37-", "L51F"], "p7": ["R10K"], "pro": ["L10I", "T12P", "M19I", "L38I", "K45R", "D60E", "C67D", "I72T"], "rev": ["Y28P", "K39R", "S54T", "S61D", "L63V", "D88G", "S112A"], "tat": ["N12K", "K19N", "T20N", "Y26F", "K29I", "S31C", "N40S", "L74S"], "vif": ["K33R", "R34K", "R37K", "L59V", "R63M", "D78E", "L102V", "D134E", "R181K"], "vpr": ["Q77H"], "vpu": ["L4I", "-6S", "V7-", "A8-", "A15V", "M67-", "V79A"]}, "labels": {"aa": "INT: N27D, I60T, I135V, I201V, I220V, I268L; RT-p51: K174Q, E207A, D248N, K277R, P294T, I329L, F346Y, S359T, C379S, I434L, A437V; RT-p66: K174Q, E207A, D248N, K277R, P294T, F346Y, S359T, C379S, I434L, A437V, N447S, K465R, N519S, K527N, S554T; gp120: T1I, G4D, N5K, E34V, N52K, N105D, -107G, R150K, Y195F, K203A, E239K, K240E, E241G, K247R, N254Y, E262K, T269M, A291T, T292E, D294I, K316E, K319R, T344A, G361N, R365H, T366I, Y367F, -368N, N369I, N370S, T371-, -373S, -374D, -375A, -376D, -377Q, -378S, -379N, -380T, -381N, -382G, -383D, -384D, -385R, E401G, R404Q, N414D, T416K, N420S, K433R, N436E, E438-, T439-; gp41: F8L, N42D, Q52H, I62V, I72M, T101N, Q108Y, I124V, D163N, S165T, I210L, Q229L, A243T, N251S, T270A, E272G, T315A, A343L; nef: I16V, M20I, E24R, I43L, I45V, E65D, E108D, K151E, N157T, E158V, N161D, S163N, M168V, C169S, R191H; p1: S8H; p17: K30Q, E42D, L51M, V82I, T84V, Y86W, K91R, I107M, K110E, Q112K, K122R, K124N; p24: L83M, I124V, T171I, S177A, E180D; p6: E19G, S24P, P25L, -26N, K31R, K33P, D34A, P35H, A36-, P37-, L51F; p7: R10K; pro: L10I, T12P, M19I, L38I, K45R, D60E, C67D, I72T; rev: Y28P, K39R, S54T, S61D, L63V, D88G, S112A; tat: N12K, K19N, T20N, Y26F, K29I, S31C, N40S, L74S; vif: K33R, R34K, R37K, L59V, R63M, D78E, L102V, D134E, R181K; vpr: Q77H; vpu: L4I, -6S, V7-, A8-, A15V, M67-, V79A"}}}, {"name": "KY392767", "node_attrs": {"div": 0.12704, "accession": "KY392767", "clade_membership": {"value": "CRF92_C2U"}, "country": {"value": "CD"}, "date": {"value": 2002.0}, "Strain_name": {"value": "CG_0151_02V_NGSID1"}, "LANL_subtype": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["C23T", "A50G", "A214G", "-304T", "A371T", "A399C", "A494G", "C520A", "A521G", "A665G", "A675G", "-707G", "C731T", "A774C", "G932A", "G989A", "C1013T", "C1040T", "G1109A", "C1137T", "T1262G", "G1313A", "T1358A", "A1370G", "G1388A", "T1403C", "G1430A", "G1474A", "G1532A", "C1541A", "G1543A", "A1709G", "G1733A", "A1759C", "-1770C", "-1773A", "-1774G", "A1780G", "A1804G", "A1819G", "T1828C", "A1849G", "A2140G", "T2158G", "T2195C", "T2365C", "A2463G", "A2509G", "A2530G", "G2567T", "C2589T", "C2615A", "G2693A", "G2878A", "G2914A", 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"K275R", "K277R", "I329L", "M377V", "T400A"], "RT-p66": ["K49R", "I135T", "A200E", "D248N", "K275R", "K277R", "M377V", "T400A", "N447S", "R461K", "T470A", "Q483H", "A502G"], "gp120": ["A3V", "V37I", "N64Y", "-107N", "-109L", "E122G", "I126V", "K127Q", "I137V", "N158K", "N159V", "N160G", "N161S", "E183D", "K203E", "T212K", "H259Q", "E262K", "E265T", "K277E", "D294A", "H302Y", "N311V", "N312S", "K319G", "Q322K", "H324K", "-326N", "-327D", "Q334E", "S360T", "G361H", "F363L", "R365G", "Y367H", "-368F", "N369V", "N370S", "-373S", "-374S", "-375M", "-376G", "-377N", "R391K", "I418T", "-433T", "N435E", "I468V", "A469V", "K472P", "E479Q"], "gp41": ["V2A", "G3L", "L4-", "I24M", "T25A", "N43K", "R46K", "H109L", "D110E", "R122N", "T130Q", "N140D", "I175L", "V193I", "E223G", "A239N", "F263C", "L273V", "Q276R", "A281G", "K286S", "K298R", "S302N", "F326V", "L330F", "H331N", "I332R", "P333-", "R334-", "R335-", "I336-"], "nef": ["W5L", "S9K", "P14S", "A15T", "R35Q", "A42G", "G50S", "F143Y", "E158K", "G159E", "C169S", "M182K", "S188H", "V194Y"], "p17": ["S9R", "A15I", "A54G", "Q65E", "Q69K", "K91G", "Q108K", "-125I"], "p2": ["T8Q", "N9A", "-10N", "-11T", "-12H"], "p24": ["T41S", "L83T", "H87Q", "V91I", "M96I", "E98D", "S120R", "T200I", "P207T", "S225G", "H226G", "K227Q"], "p6": ["S3N", "L5I", "R16G", "S23P", "K33R"], "p7": ["K7R", "R10K", "I12T"], "pro": ["M19L", "I62V", "I64L", "I72T", "T74A"], "rev": ["S8N", "K14R", "T18I", "A37T", "K39R", "I52V", "G57E", "S61G", "E68T", "S72P", "T91S", "S99R", "K105*", "E116K"], "tat": ["N24R", "P59S", "K71E", "P81Q", "G83D"], "vif": ["R17K", "V31I", "F39Y", "K50R", "H73L", "D78E", "H83N", "R90S", "R93K", "S116T", "Q136P", "I154T", "P156T", "N176D", "S186N", "H187R"], "vpr": ["Q3R", "I63T", "I84V"], "vpu": ["L4I", "-6T", "I9-", "V10-", "L12F", "V14I", "V26A", "I28L", "L33W", "I43V", "E60D", "L61T", "S62E", "V65A", "E66I", "M67L", "-74L", "-75R", "-76L"]}, "labels": {"aa": "INT: L45Q, L74I, E96D, I101V, Q136K, D167E, T210I, K211R, R284G, D286N; RT-p51: K49R, I135T, A200E, D248N, K275R, K277R, I329L, M377V, T400A; RT-p66: K49R, I135T, A200E, D248N, K275R, K277R, M377V, T400A, N447S, R461K, T470A, Q483H, A502G; gp120: A3V, V37I, N64Y, -107N, -109L, E122G, I126V, K127Q, I137V, N158K, N159V, N160G, N161S, E183D, K203E, T212K, H259Q, E262K, E265T, K277E, D294A, H302Y, N311V, N312S, K319G, Q322K, H324K, -326N, -327D, Q334E, S360T, G361H, F363L, R365G, Y367H, -368F, N369V, N370S, -373S, -374S, -375M, -376G, -377N, R391K, I418T, -433T, N435E, I468V, A469V, K472P, E479Q; gp41: V2A, G3L, L4-, I24M, T25A, N43K, R46K, H109L, D110E, R122N, T130Q, N140D, I175L, V193I, E223G, A239N, F263C, L273V, Q276R, A281G, K286S, K298R, S302N, F326V, L330F, H331N, I332R, P333-, R334-, R335-, I336-; nef: W5L, S9K, P14S, A15T, R35Q, A42G, G50S, F143Y, E158K, G159E, C169S, M182K, S188H, V194Y; p17: S9R, A15I, A54G, Q65E, Q69K, K91G, Q108K, -125I; p2: T8Q, N9A, -10N, -11T, -12H; p24: T41S, L83T, H87Q, V91I, M96I, E98D, S120R, T200I, P207T, S225G, H226G, K227Q; p6: S3N, L5I, R16G, S23P, K33R; p7: K7R, R10K, I12T; pro: M19L, I62V, I64L, I72T, T74A; rev: S8N, K14R, T18I, A37T, K39R, I52V, G57E, S61G, E68T, S72P, T91S, S99R, K105*, E116K; tat: N24R, P59S, K71E, P81Q, G83D; vif: R17K, V31I, F39Y, K50R, H73L, D78E, H83N, R90S, R93K, S116T, Q136P, I154T, P156T, N176D, S186N, H187R; vpr: Q3R, I63T, I84V; vpu: L4I, -6T, I9-, V10-, L12F, V14I, V26A, I28L, L33W, I43V, E60D, L61T, S62E, V65A, E66I, M67L, -74L, -75R, -76L"}}}, {"name": "CRF92_C2U_NODE_0000005", "node_attrs": {"div": 0.09287999999999999, "clade_membership": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["C281A", "G425A", "A519G", "A653G", "C669A", "C731T", "C749T", "A881G", "A1192G", "A1340G", "C1351A", "A1359T", "A1370G", "A1835G", "G1845A", "G1912A", "G2065A", "T2107C", "C2326T", "G2683A", "G3079A", "A3095G", "T3424C", "A3578T", "A3646G", "A3985G", "G4148A", "G4564A", "C4608A", "A4786C", "A4911C", "C4988A", "G5185A", "C5496A", "T5579C", "T5636C", "G5703A", "G5706A", "A5746G", "A5781T", "A5896G", "G5954A", "A5995G", "-6170A", "-6171T", "-6173C", "-6178C", "T6193C", "T6295G", "G6329A", "A6379G", "A6481G", "C6599T", "C6612T", "A6647G", "G6653A", "G6655T", "G6774A", "G6779A", "A6801G", "C6807T", "G6948A", "-6984C", "-6985A", "-6986A", "-6987A", "-6988T", "C7014T", "A7155C", "T7156A", "A7160G", "-7162G", "G7519A", "C7532A", "T7813C", "A7915G", "G7947A", "C7950T", "G7964A", "C8062T", "A8080C", "C8112T", "T8292-", "A8388G", "A8441G", "A8447G", "G8531A", "C8688A", "A8701T", "G8739A", "C8921T", "C8972T"], "INT": ["A125T", "A278D"], "RT-p51": ["N334D"], "RT-p66": ["N334D", "I495L"], "gp120": ["E267N", "G307E", "-374T", "-377S", "-385T", "T387I"], "gp41": ["Q77K", "M115L", "G215E", "P216L", "G221R", "T270I"], "nef": ["I16V", "H116N", "Y120F"], "p17": ["Q112K", "-128V"], "p24": ["K154R", "P207Q", "T210S"], "pro": ["I13V", "G16E", "M89I"], "rev": ["I78L"], "tat": ["N40K", "L68P", "D80N"], "vif": ["L8M", "K67T", "Q105K", "M109L", "D134E"], "vpu": ["-6I", "I18L", "R47A", "E58D", "-68G", "-69N"]}, "labels": {"aa": "INT: A125T, A278D; RT-p51: N334D; RT-p66: N334D, I495L; gp120: E267N, G307E, -374T, -377S, -385T, T387I; gp41: Q77K, M115L, G215E, P216L, G221R, T270I; nef: I16V, H116N, Y120F; p17: Q112K, -128V; p24: K154R, P207Q, T210S; pro: I13V, G16E, M89I; rev: I78L; tat: N40K, L68P, D80N; vif: L8M, K67T, Q105K, M109L, D134E; vpu: -6I, I18L, R47A, E58D, -68G, -69N"}}, "children": [{"name": "MF372645", "node_attrs": {"div": 0.13687, "accession": "MF372645", "clade_membership": {"value": "CRF92_C2U"}, "country": {"value": "CD"}, "date": {"value": 2008.0}, "Strain_name": {"value": "DRC796"}, "LANL_subtype": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["A224G", "G317A", "A326G", "G362C", "A365C", "G368A", "A380C", "G401A", "C418G", "A419C", "A424G", "C426T", "A435C", "G491A", "A499T", "T516A", "A524G", "C528A", "C590T", "A607G", "G608A", "G644A", "A654T", "G671C", "A676C", "C684A", "G693A", "C747A", "A774C", "G791A", "A839C", "A878G", "C879G", "A880C", "G956A", "T988C", "T992G", "T1004C", "G1019A", "A1101G", "G1109A", "C1115G", "T1260G", "T1263A", "G1271A", "A1307G", "G1341A", "A1459G", "C1490T", "A1565G", "A1586G", "G1589A", "G1619A", "T1646C", "G1657A", "T1658C", "A1670T", "G1673A", "T1676C", "T1679C", "T1681C", "C1721T", "A1725C", "G1733A", "G1743C", "A1759G", "A1771-", "G1772-", "G1773-", "C1775-", "A1780T", "T1781C", "C1783T", "T1784G", "G1785C", "C1786T", "T1787C", "C1790T", "T1792G", "G1794A", "A1795C", "T1797-", "C1825T", "T1831C", "A1832T", "T1854C", "G1855A", "A1894T", "A1907T", "A1908C", "C1966G", "T2035C", "T2041G", "T2104C", "A2140G", "C2281T", "A2362G", "G2456C", "A2461G", "A2462G", "G2473A", "C2485T", "T2499G", "C2533T", "T2542C", "G2583C", "C2620T", "A2674G", "G2682A", "G2705A", "A2727G", "T2737G", "C2831T", "T2908C", "C2909T", "G2926A", "G2929A", "G2947A", "C3067A", "T3068A", "C3100T", "G3168A", "G3211A", "T3225G", "A3391T", "C3394T", "C3449T", "G3477A", "A3565G", "G3595A", "A3684G", "A3733G", "C3734A", "T3754C", "T3755A", "C3773T", "A3795G", "G3808C", "T3856A", "G3878C", "G3891A", "C3908T", "T3970C", "A4003G", "A4012G", "G4027A", "A4030G", "G4060A", "T4110C", "G4145A", "G4156A", "A4246G", "G4285A", "C4381T", "C4412T", "A4433G", "A4555G", "G4636A", "T4679C", "T4702A", "C4754T", "T4761G", "T4776C", "T4800C", "T4805G", "T4820C", "G4859A", "C4890A", "A4966G", "G4982T", "C5034T", "A5057G", "T5102C", "A5112G", "A5113G", "G5143A", "C5213A", "C5221T", "A5225G", "C5251T", "A5278G", "C5285T", "C5311T", "-5359C", "A5400C", "T5424C", "A5432G", "T5457C", "C5491T", "G5548A", "A5557G", "T5612A", "-5626A", "T5648G", "C5653A", "A5659T", "A5721G", "A5733G", "A5734G", "G5737A", "G5747A", "T5787A", "A5788T", "C5789T", "A5790G", "-5791T", "G5808-", "G5842A", "T5843A", "T5854G", "T5857G", "G5882A", "G5893A", "G5900A", "G5902A", "A5935C", "G5956T", "A6028C", "A6061C", "T6072C", "G6073A", "A6092G", "A6121G", "A6136G", "-6167G", "-6172A", "-6174C", "-6175C", "A6177C", "-6180A", "C6183G", "T6184A", "-6186C", "C6189A", "T6190A", "A6194T", "-6195C", "-6196T", "-6198C", "A6200G", "-6201A", "-6202C", "-6207C", "-6208T", "-6209C", "-6211G", "-6212T", "A6253G", "A6263T", "A6266T", "T6287C", "C6293T", "A6327G", "G6339T", "T6340A", "C6347T", "T6358C", "A6368G", "G6373A", "C6397G", "T6409C", "C6469T", "C6548T", "G6550A", "C6559T", "G6577A", "A6589G", "G6611T", "A6616G", "G6631C", "T6643A", "G6644T", "T6676C", "-6689G", "A6723T", "G6732A", "A6733C", "A6734G", "A6751G", "C6787T", "A6796G", "A6799T", "G6806A", "T6815A", "C6818A", "C6824G", "T6826A", "T6827C", "T6828A", "C6829T", "-6830T", "-6831T", "-6832C", "-6833A", "-6834A", "-6835G", "G6850T", "A6855G", "A6881G", "C6895T", "C6938T", "A6944T", "A6945C", "C6951A", "A6952C", "C6966-", "-6983A", "-6989G", "-6990A", "-6991C", "-6992A", "-6993C", "-6994A", "-6995A", "-6996A", "-6997A", "-6998A", "-6999G", "-7000C", "-7001A", "-7002A", "-7003T", "-7005A", "C7009A", "T7087C", "A7090G", "A7106G", "T7114C", "G7132A", "C7136T", "A7138G", "G7145C", "G7146A", "-7153T", "C7164G", "A7169G", "-7170T", "A7245G", "C7250A", "A7256G", "C7267T", "A7268G", "A7396G", "A7402G", "C7429T", "A7477G", "A7522G", "C7590G", "C7605G", "C7625A", "A7646C", "C7690A", "C7699T", "A7722G", "C7747A", "A7750G", "G7753A", "A7773G", "C7792A", "T7801A", "A7840G", "G7880A", "A7931G", "T7932C", "C7940T", "A7953G", "C7959T", "A7977G", "C8005G", "T8028C", "G8085C", "G8093C", "A8095C", "G8107A", "C8147T", "C8155T", "T8169C", "G8170A", "G8194A", "C8221T", "A8224T", "G8254A", "G8264A", "G8267A", "C8286G", "T8287C", "-8292A", "-8309A", "-8330G", "G8354A", "T8387G", "A8400C", "G8402A", "C8445A", "G8461A", "G8465A", "A8474C", "A8530G", "A8534G", "A8555G", "C8603T", "C8640T", "A8655C", "G8666C", "G8678A", "C8684T", "C8699A", "G8738A", "T8770A", "T8786G", "A8798C", "A8804G", "G8822A", "T8847A", "A8874G", "A8885G", "C8906A", "A8969C", "G8970T", "A8971C", "G8978A", "T9012A"], "INT": ["K7R", "E11D", "N17S", "N27K", "E35Q", "S39N", "M84I", "V112A", "A124T", "I220V"], "RT-p51": ["D121H", "N123D", "I135R", "S163T", "K174Q", "G196E", "E204K", "K211R", "F214L", "P272S", "D324E", "L325I", "R358K", "M377R", "E432D"], "RT-p66": ["D121H", "N123D", "I135R", "S163T", "K174Q", "G196E", "E204K", "K211R", "F214L", "P272S", "D324E", "L325I", "L329I", "R358K", "M377R", "E432D", "R461K", "K530R", "Q547K", "S554T"], "gp120": ["N5K", "V10I", "V16I", "E34N", "L58F", "K69N", "V73A", "I80V", "N105D", "A106I", "-107K", "-109S", "-111D", "-112T", "-113L", "-114S", "I137L", "R138W", "Y145H", "N158S", "N161T", "S162Q", "T172A", "M173I", "A253F", "V264L", "Y290F", "A291T", "T292D", "G293A", "D294V", "H302Y", "E309K", "Q315K", "K316-", "V317-", "A318-", "K319-", "K320-", "L321-", "Q322-", "E323-", "H324-", "F325-", "V332I", "Q334R", "I343V", "N364S", "R365-", "T366-", "Y367-", "-373D", "-375I", "-378N", "-384D", "I418V", "R428W", "G431H", "-433S", "N434T", "T436E", "N437S", "T439A", "K464R", "L466I", "I468V", "K472E"], "gp41": ["T96S", "T101S", "Q108K", "N129K", "N140S", "D148E", "N157S", "D163E", "V193I", "P213S", "D217G", "P219L", "E225G", "L242S", "R261T", "V264L", "V289A", "V321I", "V322I", "A328G", "L330Y"], "nef": ["M20L", "R40H", "E62Q", "K105Q", "E108D", "F143Y", "E152D", "C169S", "S188Q"], "p1": ["R9H"], "p17": ["T28S", "K30R", "I34L", "L61M", "T62A", "Q65K", "K91R", "I107L", "K112N", "K114T", "Q117K", "A120T"], "p2": ["T8N", "N9T", "-10S"], "p24": ["L6I", "I15L", "Q50A", "V86A", "H87Q", "M96I", "I124V", "D128E", "S177A", "S178T", "G204S"], "p6": ["L1P", "A22P", "-26R", "K27Q", "Q28E", "E29K", "D32-", "S40-", "K42-", "S43-", "L44-", "P49L", "L51S"], "pro": ["T12S", "M19T", "N37S"], "rev": ["P31L", "H53D", "E79D", "C82S", "I83L", "E87K", "S100L", "P103S", "A108T", "E116K"], "tat": ["K19R", "A58T", "S61G", "S75P", "P81S", "T82A", "P84S"], "vif": ["R17K", "F39Y", "L59V", "H73Q", "L102M", "H127R", "R132S", "R159I", "N176G", "S186N"], "vpr": ["Q3R", "P37T", "S41G", "R85P"], "vpu": ["I2N", "L5I", "V7-", "V10A", "V14G", "L16I", "I43V", "D44N", "A47E"]}, "labels": {"aa": "INT: K7R, E11D, N17S, N27K, E35Q, S39N, M84I, V112A, A124T, I220V; RT-p51: D121H, N123D, I135R, S163T, K174Q, G196E, E204K, K211R, F214L, P272S, D324E, L325I, R358K, M377R, E432D; RT-p66: D121H, N123D, I135R, S163T, K174Q, G196E, E204K, K211R, F214L, P272S, D324E, L325I, L329I, R358K, M377R, E432D, R461K, K530R, Q547K, S554T; gp120: N5K, V10I, V16I, E34N, L58F, K69N, V73A, I80V, N105D, A106I, -107K, -109S, -111D, -112T, -113L, -114S, I137L, R138W, Y145H, N158S, N161T, S162Q, T172A, M173I, A253F, V264L, Y290F, A291T, T292D, G293A, D294V, H302Y, E309K, Q315K, K316-, V317-, A318-, K319-, K320-, L321-, Q322-, E323-, H324-, F325-, V332I, Q334R, I343V, N364S, R365-, T366-, Y367-, -373D, -375I, -378N, -384D, I418V, R428W, G431H, -433S, N434T, T436E, N437S, T439A, K464R, L466I, I468V, K472E; gp41: T96S, T101S, Q108K, N129K, N140S, D148E, N157S, D163E, V193I, P213S, D217G, P219L, E225G, L242S, R261T, V264L, V289A, V321I, V322I, A328G, L330Y; nef: M20L, R40H, E62Q, K105Q, E108D, F143Y, E152D, C169S, S188Q; p1: R9H; p17: T28S, K30R, I34L, L61M, T62A, Q65K, K91R, I107L, K112N, K114T, Q117K, A120T; p2: T8N, N9T, -10S; p24: L6I, I15L, Q50A, V86A, H87Q, M96I, I124V, D128E, S177A, S178T, G204S; p6: L1P, A22P, -26R, K27Q, Q28E, E29K, D32-, S40-, K42-, S43-, L44-, P49L, L51S; pro: T12S, M19T, N37S; rev: P31L, H53D, E79D, C82S, I83L, E87K, S100L, P103S, A108T, E116K; tat: K19R, A58T, S61G, S75P, P81S, T82A, P84S; vif: R17K, F39Y, L59V, H73Q, L102M, H127R, R132S, R159I, N176G, S186N; vpr: Q3R, P37T, S41G, R85P; vpu: I2N, L5I, V7-, V10A, V14G, L16I, I43V, D44N, A47E"}}}, {"name": "MF372644", "node_attrs": {"div": 0.14259, "accession": "MF372644", "clade_membership": {"value": "CRF92_C2U"}, "country": {"value": "CD"}, "date": {"value": 2008.0}, "Strain_name": {"value": "DRC768"}, "LANL_subtype": {"value": "CRF92_C2U"}}, "branch_attrs": {"mutations": {"nuc": ["A217G", "-305A", "G367A", "C379A", "A447G", "A461T", "C498T", "A499C", "C520T", "A554G", "G615A", "A632G", "G674A", "A678C", "C679A", "C681A", "G686A", "A691G", "T695G", "G697A", "C698A", "A700C", "A703G", "A704-", "-707C", "-708A", "-709A", "-710A", "-711G", "-712A", "-713A", "T728C", "G755A", "A810G", "A836G", "T884C", "T974C", "G977A", "G1077A", "A1079C", "C1137T", "T1166C", "T1244C", "G1256A", "T1262C", "T1344C", "C1362T", "G1400A", "T1409C", "-1444C", "-1445C", "-1446A", "C1447A", "C1448T", "A1450-", "T1451-", "A1452-", "C1453-", "A1454-", "-1456C", "-1457C", "A1461G", "G1476A", "T1501C", "A1503G", "G1543A", "A1563G", "C1680A", "T1682C", "G1687C", "G1726A", "C1756A", "A1771G", "-1774A", "T1796C", "T1828G", "A1832G", "T1868C", "T1873C", "G1901A", "A1907G", "C1966T", "A1972G", "A1984T", "G2042A", "T2101A", "A2191G", "T2365C", "A2368G", "A2395G", "A2413G", "T2449G", "G2602A", "C2615A", "A2629G", "G2704A", "A2707T", "A2716C", "T2803A", "C2839A", "A2842G", "A2846C", "G2847A", "G2869A", "C2909G", "A2950T", "C2960T", "A2977C", "C2978T", "A3080C", "A3124G", "G3169A", "C3223T", "A3238G", "C3274T", "G3334A", "T3399C", "C3405T", "G3427A", "T3433C", "G3439A", "A3442T", "G3494A", "A3538C", "G3556A", "T3560G", "A3570C", "G3574A", "T3602C", "G3631A", "G3643A", "A3651G", "A3676G", "G3737A", "G3772T", "A3805T", "A3824T", "C3857T", "T3889C", "A3907G", "T3967C", "T4009C", "A4064G", "T4177G", "A4228G", "A4231G", "T4258C", "A4366G", "A4397C", "C4399A", "A4410C", "A4427T", "A4459G", "G4498A", "C4501T", "A4525G", "A4528T", "A4531G", "C4543T", "A4552G", "A4573G", "C4579T", "G4622A", "A4644G", "T4646A", "C4667T", "G4677A", "T4678G", "A4684G", "G4687A", "T4691A", "A4693C", "G4694A", "A4697T", "G4719C", "A4721G", "C4724T", "A4727G", "A4737G", "T4742C", "T4761C", "A4769T", "G4774A", "T4799C", "G4816A", "G4878A", "A4937C", "C5006T", "T5018C", "A5051G", "C5052A", "T5062C", "A5065G", "T5091C", "A5122G", "C5125T", "A5146G", "A5179G", "A5200G", "G5233A", "C5237T", "C5239T", "A5290G", "T5303A", "A5305G", "A5336C", "T5339C", "T5356C", "-5359T", "A5360G", "A5447G", "T5448A", "T5472A", "A5494C", "T5511C", "A5513C", "G5538A", "A5545G", "A5547C", "G5548C", "G5575A", "C5602T", "T5612C", "T5613A", "T5614C", "A5615C", "-5620G", "-5621A", "-5622A", "A5625C", "-5626T", "T5627G", "A5628G", "G5635A", "C5639G", "T5641C", "A5659C", "C5679T", "T5684C", "T5686G", "A5687G", "A5689C", "T5704A", "T5707A", "T5708G", "A5712G", "A5717G", "A5718G", "G5720A", "T5728A", "G5730A", "T5739A", "G5747C", "G5748A", "T5787C", "-5791G", "C5792A", "A5793G", "C5797T", "-5799G", "-5800T", "-5801C", "-5802A", "-5803G", "-5804C", "-5805G", "-5806C", "-5807T", "G5811-", "A5818G", "A5845C", "G5861A", "A5865G", "C5866G", "A5907G", "A5926G", "A5955G", "G6022A", "A6030G", "A6044G", "T6076C", "A6133G", "A6142T", "T6145C", "C6163T", "T6166C", "-6167A", "-6172C", "-6174A", "-6175A", "-6180C", "T6181C", "T6184C", "-6186A", "T6187A", "A6188G", "A6191G", "-6195A", "-6196A", "-6198G", "-6201T", "-6202A", "-6203G", "-6204G", "-6205C", "-6207T", "-6208A", "-6209G", "T6210G", "-6211T", "-6212A", "C6213A", "G6214C", "G6217A", "G6218-", "A6219-", "G6220-", "C6221A", "G6225A", "A6230C", "A6234G", "T6241C", "T6246A", "G6268A", "C6271T", "A6273G", "A6274G", "C6275G", "A6278C", "A6279G", "G6280A", "G6284C", "T6285A", "G6290T", "G6303A", "A6313G", "C6317T", "A6320C", "G6323A", "A6338G", "C6427T", "A6438T", "G6442A", "A6525G", "G6526A", "G6532A", "A6572G", "G6577C", "A6605G", "G6631T", "T6655C", "A6682G", "A6683C", "T6688C", "-6689A", "A6691G", "A6752C", "T6758C", "A6764C", "A6780G", "A6781C", "A6799G", "T6838C", "G6841C", "A6848G", "G6850A", "A6861C", "T6863G", "C6864T", "C6888T", "A6889G", "T6892C", "G6935A", "C6937A", "T6949A", "-6953T", "-6954A", "-6955C", "-6956A", "-6957A", "-6958T", "-6959G", "-6960T", "-6961T", "-6962A", "-6963A", "-6964T", "-6965A", "-6967A", "-6968A", "-6969A", "-6970C", "-6971A", "-6972G", "-6973T", "-6974A", "-6975G", "-6976T", "-6977T", "-6978A", "-6979T", "-6980G", "-6981A", "-6982G", "-6983C", "-7005G", "A7016C", "C7018T", "G7026A", "A7144G", "-7153A", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7171-", "A7177G", "T7180A", "A7297G", "C7313G", "G7315A", "G7322A", "G7341C", "G7366A", "G7390A", "A7426G", "A7427G", "T7432C", "T7537A", "G7608C", "A7620G", "C7625G", "T7633C", "T7642G", "A7646T", "G7658C", "A7672G", "T7681C", "G7702A", "T7775C", "G7790A", "A7791G", "G7807A", "A7818G", "G7952C", "A7962G", "A7996C", "A7998C", "A8029G", "G8105A", "A8111G", "G8136C", "G8144A", "C8146T", "A8151G", "A8175G", "G8188A", "T8200G", "T8203A", "C8210T", "C8220T", "T8223C", "T8280G", "C8290-", "T8291-", "T8293-", "C8294-", "A8295-", "T8296C", "G8323A", "G8324A", "A8329C", "C8331-", "G8349A", "A8367-", "G8368-", "T8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "T8375-", "G8376-", "G8377-", "A8378-", "G8407A", "A8457G", "G8458A", "A8459G", "C8492T", "C8514T", "G8516A", "A8519G", "A8522G", "A8525G", "T8543G", "A8567C", "T8568G", "T8585C", "G8588A", "C8597T", "G8604A", "T8646C", "A8656G", "G8666T", "C8699T", "T8740C", "C8741T", "A8746T", "G8753A", "C8756A", "G8807A", "A8812G", "G8830C", "T8835C", "G8846A", "G8861A", "A8868C", "G8914A", "C8915T", "G8917C", "T8924C", "A8969T", "C8975A", "G8978C", "T9029C"], "INT": ["E10D", "N17C", "T97A", "I208L", "E212A", "T218S", "G283S"], "RT-p51": ["I178M", "E204D", "E207D", "D248E", "S251H", "P272A", "I329L", "L435P", "A437V"], "RT-p66": ["I178M", "E204D", "E207D", "D248E", "S251H", "P272A", "L435P", "A437V", "E449D", "V467I", "S489A", "E492A", "N519S", "V548I"], "gp120": ["A3M", "K18R", "E34R", "E59G", "N64D", "A106N", "-107I", "N108T", "T110-", "M121-", "E122-", "P123-", "G124-", "E125-", "F131Y", "M133I", "K140R", "Q141E", "K142R", "V144Q", "A146S", "R150K", "P155S", "I156L", "D157N", "S162G", "Y195F", "K224R", "K240E", "E241D", "N251D", "A253V", "K277Q", "K300Q", "I304L", "E309S", "K316R", "A318V", "-326N", "-327N", "N328-", "K329-", "H336P", "S337V", "T345M", "G361R", "R365K", "-368N", "N369V", "T371E", "N372T", "-373F", "-375N", "-376S", "-378Y", "-379E", "-380P", "-381N", "-382G", "I388L", "R391K", "N435R"], "gp41": ["L4V", "V7M", "G13A", "N42D", "D78E", "S102T", "K106R", "Q108E", "D113E", "E119Q", "D163S", "K166N", "K172R", "D217H", "E220G", "R231S", "D232A", "A268T", "I270V", "G278A", "A281T", "K283R", "Y291C", "S299R", "T306I", "I307T", "F326C", "L330-", "H331-", "I336-", "A343-"], "nef": ["G3S", "S9-", "I10-", "V11-", "G12-", "R22K", "R39E", "L76V", "G88S", "Y102H", "K105R", "V133T", "Y135F", "N157S", "S163T", "M168I", "M173I", "T176P", "R191H", "R192T"], "p17": ["S9R", "G11E", "A15E", "S38G", "E42D", "L55S", "T62V", "V94I", "Q113-", "-125K", "-126Q", "-127Q"], "p2": ["-10V", "I13-"], "p24": ["I27V", "A116T"], "p6": ["L1I", "S3T", "R16K", "P25-", "-26Q", "K31R", "L50W"], "p7": ["G4S", "I12T", "I13V", "R26K", "K33E"], "pro": ["T12A", "E35K", "N37D", "V82I"], "rev": ["S8N", "E11A", "S61G", "S86N", "D88G", "S99N", "D114N"], "tat": ["N24R", "F32L", "K40Q", "Y46S", "R57G", "A58P", "D67N", "K85E"], "vif": ["T20A", "V31S", "K33R", "R34K", "K36T", "E45Q", "I51V", "E61D", "R63K", "R77K", "V98I", "E117D", "P156T", "R159T", "K160R", "K179R", "T180I", "H187R"], "vpr": ["H45Y", "L67M", "Q77H", "I84T", "R85L"], "vpu": ["I2T", "Y3P", "L5E", "V7W", "V10T", "A11G", "V26A", "Y27G", "I28L", "L33I", "L34R", "K37R", "R38K", "W41R", "D44E", "E63A", "M67V", "E70L", "M71R", "G72L", "N73L", "L77-", "N80H"]}, "labels": {"aa": "INT: E10D, N17C, T97A, I208L, E212A, T218S, G283S; RT-p51: I178M, E204D, E207D, D248E, S251H, P272A, I329L, L435P, A437V; RT-p66: I178M, E204D, E207D, D248E, S251H, P272A, L435P, A437V, E449D, V467I, S489A, E492A, N519S, V548I; gp120: A3M, K18R, E34R, E59G, N64D, A106N, -107I, N108T, T110-, M121-, E122-, P123-, G124-, E125-, F131Y, M133I, K140R, Q141E, K142R, V144Q, A146S, R150K, P155S, I156L, D157N, S162G, Y195F, K224R, K240E, E241D, N251D, A253V, K277Q, K300Q, I304L, E309S, K316R, A318V, -326N, -327N, N328-, K329-, H336P, S337V, T345M, G361R, R365K, -368N, N369V, T371E, N372T, -373F, -375N, -376S, -378Y, -379E, -380P, -381N, -382G, I388L, R391K, N435R; gp41: L4V, V7M, G13A, N42D, D78E, S102T, K106R, Q108E, D113E, E119Q, D163S, K166N, K172R, D217H, E220G, R231S, D232A, A268T, I270V, G278A, A281T, K283R, Y291C, S299R, T306I, I307T, F326C, L330-, H331-, I336-, A343-; nef: G3S, S9-, I10-, V11-, G12-, R22K, R39E, L76V, G88S, Y102H, K105R, V133T, Y135F, N157S, S163T, M168I, M173I, T176P, R191H, R192T; p17: S9R, G11E, A15E, S38G, E42D, L55S, T62V, V94I, Q113-, -125K, -126Q, -127Q; p2: -10V, I13-; p24: I27V, A116T; p6: L1I, S3T, R16K, P25-, -26Q, K31R, L50W; p7: G4S, I12T, I13V, R26K, K33E; pro: T12A, E35K, N37D, V82I; rev: S8N, E11A, S61G, S86N, D88G, S99N, D114N; tat: N24R, F32L, K40Q, Y46S, R57G, A58P, D67N, K85E; vif: T20A, V31S, K33R, R34K, K36T, E45Q, I51V, E61D, R63K, R77K, V98I, E117D, P156T, R159T, K160R, K179R, T180I, H187R; vpr: H45Y, L67M, Q77H, I84T, R85L; vpu: I2T, Y3P, L5E, V7W, V10T, A11G, V26A, Y27G, I28L, L33I, L34R, K37R, R38K, W41R, D44E, E63A, M67V, E70L, M71R, G72L, N73L, L77-, N80H"}}}]}]}]}]}, {"name": "NODE_0000291", "node_attrs": {"div": 0.06572, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T12G", "G47T", "A216G", "A224G", "T227A", "G278A", "A303T", "A304T", "-305T", "G354A", "C362A", "A365C", "G378A", "C393A", "A417C", "A419C", "G424T", "G495T", "C507A", "A554G", "C587T", "C603G", "A619G", "T655A", "C731T", "A815G", "A836G", "A959G", "G1016A", "C1136T", "A1142G", "A1205G", "A1230C", "G1256A", "G1268A", "C1362T", "T1409C", "T1421G", "-1444C", "-1445A", "C1447A", "G1476A", "G1487A", "G1495A", "A1622G", "T1679C", "T1729-", "C1730-", "G1731-", "G1734-", "A1735T", "G1736C", "A1740G", "A1742G", "C1745A", "-1746A", "-1747C", "-1748C", "G1772A", "A1777G", "C1782-", "C1783-", "T1787-", "G1794A", "A1861G", "A1867C", "G1942A", "T2080A", "T2086A", "T2107C", "A2202C", "A2210G", "A2221G", "C2263T", "A2329G", "C2356T", "A2413G", "G2473A", "C2839A", "A2842G", "T2908C", "A2925G", "A3097G", "T3121C", "T3170A", "A3205G", "T3380C", "A3382G", "A3385G", "G3427A", "C3449A", "A3463G", "A3484G", "T3589C", "G3664A", "A3684G", "T3850G", "T3865C", "G3989A", "T3991C", "A4036G", "G4060A", "A4105C", "C4132T", "A4219G", "T4234C", "C4474T", "C4534T", "A4561G", "G4581A", "T4585C", "C4652T", "C4715T", "T4805A", "G4865A", "T4932G", "A4937C", "C5006T", "T5027C", "A5045G", "T5073C", "A5134G", "G5143A", "T5182C", "G5267A", "A5336G", "T5382G", "A5547C", "A5555C", "A5563G", "C5584T", "C5602-", "T5624G", "A5632G", "T5636G", "A5643G", "G5668A", "A5707G", "G5737A", "T5739A", "A5745T", "-5791G", "C5792A", "C5797-", "A5848G", "T5860G", "A5865G", "A6065G", "A6136G", "C6165G", "-6196T", "C6238T", "G6311A", "A6320C", "G6339A", "G6346A", "C6347T", "C6397T", "G6403C", "A6490T", "C6559T", "-6689A", "C6692A", "T6694G", "G6773A", "G6774A", "C6807G", "A6818G", "-6833C", "-6834C", "-6835T", "T6849A", "-6960A", "C7008-", "T7107A", "A7138G", "T7147C", "G7152-", "T7165A", "C7171A", "A7234G", "C7250T", "C7267T", "G7315A", "A7477G", "G7519A", "A7589G", "G7658C", "C7678T", "C7747T", "G7753A", "G7769A", "C7770A", "T7796A", "G7862A", "A7918G", "C7959T", "A7962G", "T8037C", "G8110A", "A8111G", "T8113G", "A8152G", "A8184T", "G8194A", "T8292G", "C8294A", "A8327G", "G8328C", "T8337A", "G8402A", "T8483C", "C8499G", "T8636A", "G8666C", "T8789C", "A8794G", "A8829T", "T8847A", "A8924G", "G8936A", "G8970-", "T8973-", "C8975-", "T8976-", "A8977-", "A8979-", "G8997-", "G9006C", "T9012C", "T9040C", "T9097G", "G9132T"], "INT": ["V72I", "R269K"], "RT-p51": ["E36A", "K39E", "K174Q", "D248E", "K277R", "S359T"], "RT-p66": ["E36A", "K39E", "K174Q", "D248E", "K277R", "S359T", "K530R"], "gp120": ["A3M", "N71D", "I137L", "V153I", "I156L", "N161-", "T172A", "E183D", "A318S", "R322A", "-326P", "N328-", "I332K", "N437T"], "gp41": ["L4I", "N42S", "T96A", "E119Q", "A156N", "S165T", "V187I", "P219L", "E220G", "N251S", "T270A", "Q294L", "H331N", "R342A", "L345Q"], "nef": ["M20I", "I43L", "P53A", "D98E", "K151R", "C169S", "I194M"], "p17": ["V7I", "S9R", "A15T", "K28H", "R30M", "A54S", "Q58K", "Q90E", "K95R", "I107E"], "p2": ["T8N"], "p6": ["E19-", "K21E", "P23T", "S24P", "P25S", "-26P", "K33R", "L35-"], "p7": ["G4S", "R10K"], "rev": ["E11A", "K14Q", "D88S", "C89G", "Q101*", "I102V", "T114A", "E116K"], "tat": ["D2E", "R57S", "Q60P", "K63E", "P70S", "P84S", "K85E"], "vif": ["R17K", "H73Q", "S116A", "E117D", "H183R", "S186N"], "vpr": ["S93A"], "vpu": ["L5-", "V10-", "V21I", "L34V", "D44K", "E60D", "L61T", "S62E", "V65S", "E66T", "-69V", "-73H", "-74L", "-75R", "-76L", "N81D"]}, "labels": {"aa": "INT: V72I, R269K; RT-p51: E36A, K39E, K174Q, D248E, K277R, S359T; RT-p66: E36A, K39E, K174Q, D248E, K277R, S359T, K530R; gp120: A3M, N71D, I137L, V153I, I156L, N161-, T172A, E183D, A318S, R322A, -326P, N328-, I332K, N437T; gp41: L4I, N42S, T96A, E119Q, A156N, S165T, V187I, P219L, E220G, N251S, T270A, Q294L, H331N, R342A, L345Q; nef: M20I, I43L, P53A, D98E, K151R, C169S, I194M; p17: V7I, S9R, A15T, K28H, R30M, A54S, Q58K, Q90E, K95R, I107E; p2: T8N; p6: E19-, K21E, P23T, S24P, P25S, -26P, K33R, L35-; p7: G4S, R10K; rev: E11A, K14Q, D88S, C89G, Q101*, I102V, T114A, E116K; tat: D2E, R57S, Q60P, K63E, P70S, P84S, K85E; vif: R17K, H73Q, S116A, E117D, H183R, S186N; vpr: S93A; vpu: L5-, V10-, V21I, L34V, D44K, E60D, L61T, S62E, V65S, E66T, -69V, -73H, -74L, -75R, -76L, N81D"}}, "children": [{"name": "NODE_0000292", "node_attrs": {"div": 0.0822, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C151A", "T153C", "G367A", "A380T", "A388G", "G400A", "C426A", "A428G", "A440C", "A474G", "A499C", "A518G", "C525A", "G552A", "G562T", "A581T", "G644A", "G648A", "-714A", "G771C", "A806G", "T1004C", "T1055C", "A1101G", "G1109A", "T1253A", "C1292T", "A1349G", "C1444T", "-1458A", "-1459A", "T1501C", "G1503A", "T1511C", "A1536T", "G1673A", "T1682C", "C1768A", "T1873C", "T1909A", "A1921T", "A1951G", "T2062C", "A2374G", "T2737C", "G2926A", "G3091A", "A3224C", "C3266T", "A3277G", "G3292A", "A3293G", "A3451G", "A3529G", "G3553A", "C3610T", "G3631A", "C4021A", "G4145A", "C4146A", "G4148A", "G4156A", "G4264A", "G4622A", "G4888A", "T4969G", "T5028C", "T5062G", "C5221T", "T5275G", "-5626T", "A5720G", "A5734G", "T5789C", "A5793G", "-5800G", "-5802G", "-5803G", "-5805A", "-5806A", "-5807T", "G5861A", "A5866G", "C5884A", "G5956T", "C6010T", "A6059G", "G6086C", "T6154A", "T6163C", "-6186A", "-6198G", "-6200A", "-6202T", "-6215A", "-6225G", "-6226A", "G6251A", "A6253G", "A6263C", "A6283G", "T6287C", "T6433G", "G6532A", "G6593A", "G6601A", "G6653A", "T6778A", "T6787A", "A6819C", "A6823G", "A6855C", "C6857A", "C6858A", "T6860C", "C6861A", "C7096A", "C7124T", "T7130C", "T7150-", "-7153C", "A7161-", "A7177G", "G7366A", "T7411G", "C7498T", "G7502A", "T7630G", "A7744G", "G7764A", "T7765G", "A7769C", "T7912C", "C7951A", "C8092A", "G8098A", "G8144A", "C8145T", "C8156T", "G8267A", "T8281G", "G8349A", "G8350A", "G8436C", "G8487C", "A8489T", "A8732G", "A8869C", "T8947A", "T9029C", "-9033G", "C9075T"], "INT": ["A124N", "A125T", "G283S"], "RT-p51": ["M377Q", "T400A"], "RT-p66": ["M377Q", "T400A", "V466I"], "gp120": ["E34D", "K69E", "E78Q", "T104S", "-114S", "-124G", "V133M", "Y145H", "S162-", "E247K", "N334T", "P335K", "S336H", "-380T", "N414K", "N432K"], "gp41": ["A67T", "D109E", "N156Q", "N160S", "F263L", "A281I", "V322I", "L330C"], "nef": ["G3N", "A32P", "A49P", "E176P", "F202Y"], "p17": ["G11E", "K18R", "R22K", "L31M", "N47D", "E55G", "I61M", "E73K", "R76I", "E105K"], "p2": ["A7V", "-11N"], "p24": ["A14P", "I124V", "S225G"], "p6": ["P30Q"], "p7": ["I12T", "V13I", "I24L"], "pro": ["N37K", "K41N"], "rev": ["K39R", "L73F", "H82N", "D84N", "S99N", "S103F"], "tat": ["P81Q"], "vif": ["G101D", "I128R"], "vpu": ["L4-", "A8G", "K38R", "I43V", "S65E"]}, "labels": {"aa": "INT: A124N, A125T, G283S; RT-p51: M377Q, T400A; RT-p66: M377Q, T400A, V466I; gp120: E34D, K69E, E78Q, T104S, -114S, -124G, V133M, Y145H, S162-, E247K, N334T, P335K, S336H, -380T, N414K, N432K; gp41: A67T, D109E, N156Q, N160S, F263L, A281I, V322I, L330C; nef: G3N, A32P, A49P, E176P, F202Y; p17: G11E, K18R, R22K, L31M, N47D, E55G, I61M, E73K, R76I, E105K; p2: A7V, -11N; p24: A14P, I124V, S225G; p6: P30Q; p7: I12T, V13I, I24L; pro: N37K, K41N; rev: K39R, L73F, H82N, D84N, S99N, S103F; tat: P81Q; vif: G101D, I128R; vpu: L4-, A8G, K38R, I43V, S65E"}}, "children": [{"name": "results/subtype_trees/CRF108_BC.nwk", "node_attrs": {"div": 0.13023, "clade_membership": {"value": "CRF108_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C152A", "G216A", "A261G", "T263A", "A278G", "-280G", "T288C", "T305-", "G394A", "T572C", "C590T", "A606G", "A607G", "G612C", "G629A", "A653G", "A691C", "G717A", "A758G", "G908A", "G1002A", "T1052C", "G1142A", "A1192G", "G1199A", "G1430A", "-1452C", "G1474A", "A1495G", "C1501A", "T1536C", "C1550T", "G1622A", "A1644T", "T1722C", "-1729T", "-1730C", "-1731G", "-1732A", "-1733G", "-1734G", "T1735A", "C1736G", "A1738-", "G1739-", "G1740-", "A1741-", "G1742-", "A1743-", "C1795T", "A2018T", "T2024C", "A2212G", "G2221A", "T2257C", "C2281T", "T2449A", "C2467T", "C2533T", "G2548A", "A2569G", "C2584T", "C2596A", "C2653T", "A2677G", "A2686G", "G2725A", "A2794G", "A2950G", "G2951A", "C3023T", "T3049C", "C3133T", "C3171G", "C3175T", "T3225A", "A3403G", "T3412C", "G3439A", "G3473A", "G3477A", "A3502T", "A3524G", "C3533A", "A3565C", "A3583T", "A3604G", "G3686A", "A3751T", "A3755T", "A3764C", "G3772A", "C3779T", "T3799C", "G3808A", "G3825A", "C3826T", "G3850T", "G3859A", "C3865G", "A3866G", "T3889C", "G3916A", "A3961G", "T3962C", "T3976C", "T3977C", "C3991T", "C4006T", "T4177C", "T4198C", "C4210T", "A4391T", "A4455T", "T4474A", "A4475C", "C4492A", "A4495G", "A4498T", "A4525G", "G4532C", "C4543A", "G4549A", "A4555G", "G4561A", "G4564A", "A4573G", "A4581G", "C4585T", "C4608A", "T4652C", "T4672A", "G4677A", "G4687A", "A4692G", "T4694G", "G4695A", "G4696A", "T4701A", "T4703A", "G4708A", "T4715C", "G4726A", "A4727T", "C4728A", "T4730C", "A4733T", "A4735G", "A4737G", "T4742C", "T4761C", "A4773G", "G4774A", "T4776C", "A4790T", "T4800C", "A4805C", "T4827C", "T4835G", "C4844A", "A4845G", "A4856G", "T4858A", "G4859A", "A4860G", "A4862G", "G4870A", "G4892A", "A4904G", "T4910C", "A4911C", "G4932A", "G4982A", "C4988T", "A5021C", "T5047C", "C5073T", "A5090G", "A5122G", "G5128A", "G5134A", "G5140A", "T5147A", "T5171C", "A5173G", "A5179T", "C5182T", "C5186A", "A5187G", "G5188A", "C5197T", "C5203T", "A5212G", "C5213G", "T5224C", "G5225A", "G5226A", "C5237T", "C5251T", "A5267G", "C5268A", "G5275A", "G5276C", "T5281C", "A5305G", "G5330A", "C5333T", "G5336T", "A5366G", "G5370A", "C5397A", "C5412G", "A5421G", "A5432G", "A5444C", "T5445A", "T5451C", "T5457C", "A5463G", "A5467T", "A5471T", "C5487T", "C5491A", "G5493A", "A5494C", "C5495A", "T5515A", "A5544C", "C5547A", "-5602G", "-5614G", "T5617A", "-5620A", "G5636C", "G5643A", "G5647T", "G5700A", "A5712G", "G5717A", "A5718T", "G5725A", "T5735C", "A5739G", "A5781T", "A5796G", "-5797T", "-5799G", "-5801A", "-5804C", "A5816G", "C5824A", "G5848A", "T5851G", "T5857G", "T5923C", "A6009G", "A6061C", "A6130G", "A6154G", "-6172T", "-6180C", "C6190T", "-6195G", "-6201C", "-6203A", "-6204A", "-6205T", "-6206A", "-6207C", "-6208T", "-6209A", "-6211T", "-6212A", "-6213T", "-6214C", "-6216G", "-6217C", "C6256A", "A6277G", "G6303A", "T6322C", "A6339T", "-6340T", "A6371G", "A6388C", "A6438T", "A6466C", "C6496T", "C6632T", "T6637C", "G6638A", "G6694A", "A6775G", "C6777A", "A6791G", "A6800C", "G6802A", "A6865G", "C6874T", "T6916C", "G6935T", "G6936C", "-6952A", "-6953T", "-6954A", "-6955C", "-6956A", "-6957A", "-6958T", "C6966-", "-6980G", "-6987A", "-6995G", "-6996A", "-6997G", "-6998G", "-6999A", "-7001A", "-7008C", "-7009C", "A7015C", "C7016A", "C7020A", "G7065A", "T7081C", "T7087A", "C7101A", "A7108G", "T7114C", "G7132A", "-7152A", "T7156C", "G7198A", "C7313A", "G7369A", "G7441A", "C7651T", "G7677A", "C7699T", "G7702T", "A7735G", "G7777A", "A7782G", "T7813C", "T7852A", "G7868A", "G7885A", "G7915A", "G7918A", "T7921G", "A7938C", "C7940T", "C7954A", "A7955G", "C7988A", "A7998G", "A8032G", "C8033A", "C8047T", "G8050A", "C8065T", "A8092G", "A8110G", "G8111A", "T8155C", "T8182G", "G8185A", "G8254A", "G8264C", "C8286G", "C8291T", "G8327-", "C8328-", "A8329-", "G8330-", "C8331-", "T8332-", "T8333-", "T8334-", "A8342T", "A8364C", "-8370G", "T8374G", "T8375G", "G8414T", "A8459G", "C8471G", "C8492A", "G8516A", "A8534G", "T8546C", "T8585C", "G8588A", "C8597A", "A8647G", "C8648G", "A8652C", "G8654A", "C8666A", "T8687C", "A8717G", "A8746T", "T8786G", "C8789A", "A8793G", "G8794A", "A8798G", "G8805A", "G8846A", "A8858G", "G8864C", "T8867C", "G8868C", "G8875A", "T8883C", "A8885G", "T8903C", "A8909C", "C8913T", "G8914T", "A8916C", "G8917A", "A8918T", "C8934A", "T8935A", "C9039T"], "INT": ["S17N", "I31V", "T206S", "Y227F", "I234L", "D253H", "D256E", "K269R", "A278D"], "RT-p51": ["A286T", "T359S"], "RT-p66": ["A286T", "T359S", "D460N", "R461K", "T477A", "Q480K", "V531I"], "gp120": ["N1K", "N52S", "E69D", "-111N", "-112T", "-117N", "-121D", "R150K", "N159E", "I173V", "Y195F", "T216S", "H259Q", "L260F", "E262K", "T308K", "N311R", "T313A", "G361S", "-368N", "-370T", "-373I", "-374T", "-378N", "L388I", "P389Q", "R404Q", "T416N", "-433G"], "gp41": ["S125N", "R133N", "A189T", "F206L", "N212T", "P213S", "D217E", "Q229K", "D232G", "L244I", "D247E", "A270T", "V321L", "A328G", "A342-", "A343-", "L344-"], "nef": ["S8R", "I10V", "V11G", "E24D", "Y102W", "K104Q", "Y135F", "D149E", "R151E", "E155K", "M168I", "E174D", "R178K", "R191F", "R192H", "L198K"], "p1": ["I5F"], "p17": ["R20K", "G55V", "L64I", "K91G", "E93Q", "V128-"], "p2": ["-10P"], "p24": ["V91I", "K154R"], "p6": ["F15L", "T22A", "T39I"], "p7": ["R3K", "K10R", "T12N"], "pro": ["L63P", "T74S"], "rev": ["E10A", "A11E", "K30N", "P31L", "Q36R", "A47E", "T62D", "P67S", "A68T", "N82D", "S88D", "F103L", "S112A", "G113R"], "tat": ["N7R", "N12K", "K19R", "N23T", "S31C", "Y32F", "L39I", "T40Q", "Y47N", "S57R", "T77P", "T82K"], "vif": ["L8M", "K17R", "M29K", "V31I", "R34K", "K36E", "G37K", "F39I", "R41K", "R47N", "H48N", "K50R", "I51V", "R63E", "Q73H", "H83Q", "I87V", "L91Q", "R92G", "S95N", "M109L", "A116T", "I154T", "K179R", "R181K", "R183H", "G185E", "H187Q"], "vpr": ["Y15N", "E25D", "Q28R", "P37A", "G41N", "H45Y", "T55E", "E58Q", "Q77H", "A89T"], "vpu": ["-6I", "V14L", "R37N", "D40N", "V43A", "E58D", "T66A", "-70G", "H73N", "D81N", "L82V"]}, "labels": {"aa": "INT: S17N, I31V, T206S, Y227F, I234L, D253H, D256E, K269R, A278D; RT-p51: A286T, T359S; RT-p66: A286T, T359S, D460N, R461K, T477A, Q480K, V531I; gp120: N1K, N52S, E69D, -111N, -112T, -117N, -121D, R150K, N159E, I173V, Y195F, T216S, H259Q, L260F, E262K, T308K, N311R, T313A, G361S, -368N, -370T, -373I, -374T, -378N, L388I, P389Q, R404Q, T416N, -433G; gp41: S125N, R133N, A189T, F206L, N212T, P213S, D217E, Q229K, D232G, L244I, D247E, A270T, V321L, A328G, A342-, A343-, L344-; nef: S8R, I10V, V11G, E24D, Y102W, K104Q, Y135F, D149E, R151E, E155K, M168I, E174D, R178K, R191F, R192H, L198K; p1: I5F; p17: R20K, G55V, L64I, K91G, E93Q, V128-; p2: -10P; p24: V91I, K154R; p6: F15L, T22A, T39I; p7: R3K, K10R, T12N; pro: L63P, T74S; rev: E10A, A11E, K30N, P31L, Q36R, A47E, T62D, P67S, A68T, N82D, S88D, F103L, S112A, G113R; tat: N7R, N12K, K19R, N23T, S31C, Y32F, L39I, T40Q, Y47N, S57R, T77P, T82K; vif: L8M, K17R, M29K, V31I, R34K, K36E, G37K, F39I, R41K, R47N, H48N, K50R, I51V, R63E, Q73H, H83Q, I87V, L91Q, R92G, S95N, M109L, A116T, I154T, K179R, R181K, R183H, G185E, H187Q; vpr: Y15N, E25D, Q28R, P37A, G41N, H45Y, T55E, E58Q, Q77H, A89T; vpu: -6I, V14L, R37N, D40N, V43A, E58D, T66A, -70G, H73N, D81N, L82V", "clade": "CRF108_BC"}}, "children": [{"name": "MN172222", "node_attrs": {"div": 0.15399000000000002, "accession": "MN172222", "clade_membership": {"value": "CRF108_BC"}, "country": {"value": "ES"}, "date": {"value": 2016.0}, "Strain_name": {"value": "P4439"}, "LANL_subtype": {"value": "CRF108_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T258C", "C287A", "T303A", "G491A", "G518A", "T570C", "A576G", "T731C", "T746C", "C771G", "A797G", "G818A", "T917C", "G959A", "C1115A", "T1245C", "T1271G", "C1452T", "A1461G", "T1547C", "G1568A", "G1619A", "A1642G", "T1644C", "T1676C", "A1771C", "G1773A", "C1853A", "G2117A", "A2463C", "C2464T", "G2567T", "C2740A", "G2925A", "A2985C", "A3043G", "A3124G", "G3168A", "T3644A", "C3691T", "A4225G", "A4376G", "C4471T", "A4577C", "T4656A", "A4786C", "T4820C", "A4869C", "A4956C", "G5094A", "T5095C", "A5186G", "A5215C", "G5257A", "C5303A", "A5360G", "T5442C", "A5462G", "T5579A", "T5616A", "T5618G", "A5640T", "T5647C", "A5668G", "T5684C", "G5711A", "T5731C", "G5748A", "A5788G", "C5789A", "A6022G", "G6028A", "G6029A", "T6076A", "C6139T", "-6167A", "-6170G", "-6171T", "-6173A", "-6174A", "-6175T", "A6177G", "T6178A", "C6183G", "C6189A", "A6192G", "G6195A", "A6203G", "T6205A", "-6210C", "G6216A", "-6218C", "-6219C", "-6220T", "-6221G", "-6222A", "-6223T", "C6263G", "A6275C", "A6311G", "A6335G", "T6337G", "T6341A", "G6345A", "A6346T", "T6418C", "A6500T", "C6548T", "C6562T", "A6576G", "A6636C", "A6638C", "T6641C", "A6649C", "A6654C", "A6683G", "G6743A", "A6785C", "C6797A", "A6798C", "G6806A", "A6809G", "G6818A", "C6819A", "C6824A", "C6826A", "C6833-", "C6834-", "T6835-", "A6854G", "A6859T", "T6932A", "T6935C", "C6938T", "A6947G", "A6960-", "-6981G", "-6982G", "-6983A", "-6984C", "-6985A", "-6986G", "-6988A", "-6989A", "-6990A", "-6991C", "-6992A", "-6993T", "-6994A", "G6995A", "A6996C", "G6997T", "-7000G", "-7002C", "-7003A", "-7004G", "-7005A", "-7006C", "A7010T", "A7056G", "G7058C", "A7074C", "C7078T", "A7094G", "A7100C", "G7104T", "A7113G", "A7115T", "A7120C", "C7127G", "C7130T", "C7147T", "A7148G", "A7149G", "-7150A", "A7152G", "-7161G", "-7162A", "G7291A", "A7315G", "G7322A", "T7334A", "T7633G", "T7642A", "G7660A", "G7790A", "A7791G", "A7799C", "T7877G", "G7965A", "C7969A", "A7989G", "G7995A", "A8014G", "C8044A", "T8094C", "A8196G", "G8197A", "C8264A", "G8281T", "G8286-", "T8287-", "A8288-", "T8289-", "C8290-", "T8291-", "G8292-", "C8293-", "A8294-", "A8295-", "C8296-", "A8297-", "T8298-", "A8299-", "C8300-", "C8301-", "T8302-", "A8303-", "G8304-", "A8305-", "A8306-", "A8338G", "G8354A", "C8406A", "G8412A", "A8461G", "G8476C", "A8503C", "A8573G", "A8597T", "A8657G", "A8729G", "T8914A", "C8930A", "G9007T", "A9009G", "G9015T", "G9016C", "T9017C", "C9018A", "T9019G", "G9021A", "C9023-", "G9024-", "G9025-", "G9026-", "A9027-", "C9028-", "C9029-", "G9030-", "G9031-", "G9032-"], "INT": ["I201V", "I268L"], "RT-p51": ["V8I", "A158S", "A173T", "R277K", "E297A", "R358K", "A435V"], "RT-p66": ["V8I", "A158S", "A173T", "R277K", "E297A", "R358K", "A435V", "L517I"], "gp120": ["I56M", "E59K", "D74E", "N108-", "T110-", "T112V", "S114R", "-115T", "-116S", "-118N", "-122T", "L137V", "K141Q", "I153V", "-161G", "E241G", "N261T", "K262Q", "S263P", "E265N", "N267T", "K277E", "D297N", "R311Q", "Q315T", "K319E", "A322K", "H324K", "P326-", "N327-", "-328N", "T334A", "K335N", "S360T", "S361P", "S365G", "N369G", "T371E", "-372N", "-375E", "-376T", "-377D", "-379S", "-381F", "I386-", "E401G", "V402L", "Y407S", "K414E", "N416Q", "C417F", "N420S", "I421F", "L425V", "K432G", "G433S", "-436G"], "gp41": ["I4M", "V7M", "F11I", "D113E", "N133S", "D163S", "N166H", "S192A", "P216-", "E217-", "L219P", "G220E", "K229R", "R231K", "I264T", "K298R", "L321I", "C330R", "N331-", "I332-", "P333-", "R334-", "R335-", "I336-", "R337-"], "nef": ["D24N", "H40R", "S45T", "D54A", "S188R", "F191Y"], "p1": ["K4R", "F5L"], "p17": ["V55A", "M61I", "Y79H", "T81A", "-125I"], "p2": ["P10S", "-12V", "I13-"], "p24": ["P14A", "D128E"], "p6": ["K31T", "D32N"], "pro": ["L19I"], "rev": ["L22I", "S56G", "E117K"], "tat": ["R7K", "K29R", "L68H", "Q81D", "K82Q", "G83K", "S84G", "E85S", "S87*"], "vif": ["L24I", "K67T", "N95H", "I124L", "V170T"], "vpr": ["R28G", "L67M"], "vpu": ["-2L", "-3E", "-5I", "I6D", "G8A", "I9-", "I21V", "V26A", "R35K", "T61E"]}, "labels": {"aa": "INT: I201V, I268L; RT-p51: V8I, A158S, A173T, R277K, E297A, R358K, A435V; RT-p66: V8I, A158S, A173T, R277K, E297A, R358K, A435V, L517I; gp120: I56M, E59K, D74E, N108-, T110-, T112V, S114R, -115T, -116S, -118N, -122T, L137V, K141Q, I153V, -161G, E241G, N261T, K262Q, S263P, E265N, N267T, K277E, D297N, R311Q, Q315T, K319E, A322K, H324K, P326-, N327-, -328N, T334A, K335N, S360T, S361P, S365G, N369G, T371E, -372N, -375E, -376T, -377D, -379S, -381F, I386-, E401G, V402L, Y407S, K414E, N416Q, C417F, N420S, I421F, L425V, K432G, G433S, -436G; gp41: I4M, V7M, F11I, D113E, N133S, D163S, N166H, S192A, P216-, E217-, L219P, G220E, K229R, R231K, I264T, K298R, L321I, C330R, N331-, I332-, P333-, R334-, R335-, I336-, R337-; nef: D24N, H40R, S45T, D54A, S188R, F191Y; p1: K4R, F5L; p17: V55A, M61I, Y79H, T81A, -125I; p2: P10S, -12V, I13-; p24: P14A, D128E; p6: K31T, D32N; pro: L19I; rev: L22I, S56G, E117K; tat: R7K, K29R, L68H, Q81D, K82Q, G83K, S84G, E85S, S87*; vif: L24I, K67T, N95H, I124L, V170T; vpr: R28G, L67M; vpu: -2L, -3E, -5I, I6D, G8A, I9-, I21V, V26A, R35K, T61E"}}}, {"name": "CRF108_BC_NODE_0000001", "node_attrs": {"div": 0.13173, "clade_membership": {"value": "CRF108_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A161C", "T424A", "C499T", "A519C", "A530G", "C588A", "G1090A", "T1292A", "G2173A", "T3045C", "A3127G", "T3399C", "A5396G", "T5415C", "A5433G", "T5436G", "T5787C", "C6320G", "A6329G", "G6391A", "T6397C", "A6647G", "C6766G", "A6767G", "A6780G", "A6786G", "A6788G", "-6959G", "-6962A", "A7186G", "A7240G", "C7625G", "G7701A", "A7859G", "A8043T", "G8113A", "A8594G", "T8607C", "T8608A", "C8904T", "C9012A"], "RT-p51": ["V317A"], "RT-p66": ["V317A"], "gp120": ["-105D", "L156V", "I305V", "E309G", "K312E"], "gp41": ["Q108E", "I186V", "R218G", "E247V", "C326G"], "nef": ["F89H"], "p17": ["M30K", "K62Q", "L85I"], "p24": ["S120N", "E180D", "D187E"], "rev": ["G89S"]}, "labels": {"aa": "RT-p51: V317A; RT-p66: V317A; gp120: -105D, L156V, I305V, E309G, K312E; gp41: Q108E, I186V, R218G, E247V, C326G; nef: F89H; p17: M30K, K62Q, L85I; p24: S120N, E180D, D187E; rev: G89S"}}, "children": [{"name": "MN172224", "node_attrs": {"div": 0.14737, "accession": "MN172224", "clade_membership": {"value": "CRF108_BC"}, "country": {"value": "ES"}, "date": {"value": 2018.0}, "Strain_name": {"value": "P5007"}, "LANL_subtype": {"value": "CRF108_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T154C", "G265A", "C287A", "T303A", "T396C", "A412G", "C419T", "A461C", "A475C", "T506C", "A525C", "A529G", "A576G", "A701G", "A887C", "C890T", "A891T", "C892G", "T937G", "A1242G", "C1243T", "A1263T", "G1355A", "A1377G", "C1378T", "C1610T", "A1642G", "T1676C", "A1712C", "A1719G", "C2024T", "G2117A", "G2134A", "A2164G", "T2206C", "A2362G", "C2420T", "G2462A", "A2560G", "G2567T", "C2575T", "G2602A", "A2612G", "A2680T", "G2683A", "A2715G", "G2947A", "A2974C", "A2986G", "G3097T", "A3259G", "C3500T", "T3559C", "A3592T", "T3644C", "G3685A", "T3755G", "C3764A", "A3768G", "A3808C", "C3976T", "A4027G", "C4258T", "T4444C", "T4579C", "G4581A", "A4677G", "A4774T", "A4956C", "A5143G", "C5149T", "G5212A", "T5228C", "T5333C", "A5370G", "A5397G", "G5432A", "A5574G", "T5611A", "A5617T", "A5619C", "A5737C", "G5802A", "A5824C", "A5911T", "G5942T", "T6010A", "A6050G", "G6059A", "G6136A", "T6155A", "A6157G", "T6166G", "-6167G", "-6170G", "-6171C", "A6179G", "A6186G", "T6187A", "A6192G", "A6197G", "C6201A", "T6202C", "A6204C", "C6207G", "-6210G", "T6211C", "T6213A", "-6218A", "-6219A", "-6220T", "-6221G", "-6222A", "-6223T", "G6225C", "A6229G", "A6232G", "A6276G", "A6278G", "C6287T", "A6303G", "G6323T", "G6336C", "A6338G", "T6339A", "T6340G", "A6376G", "G6463A", "G6572A", "G6577A", "C6599A", "G6611A", "A6773G", "A6798T", "G6806A", "A6850T", "A6947G", "-6961G", "-6963C", "-6979A", "-6981C", "-6982A", "-6983G", "-6984A", "-6985A", "-6986A", "-6988C", "-6989A", "-6990T", "-6991A", "-6992G", "-6993C", "-6994T", "-7000T", "-7002A", "-7003T", "-7004G", "-7005C", "-7006A", "A7088G", "A7094G", "A7102T", "-7150C", "A7158G", "T7159A", "G7160-", "A7163-", "C7164-", "C7170A", "A7252G", "G7628A", "T7633A", "T7789C", "G7790A", "T7801C", "A7820C", "G7846A", "A7885G", "T8008A", "A8161G", "G8234A", "T8235C", "T8279G", "A8388G", "G8407A", "T8595C", "A8636G", "G8637A", "G8647A", "G8648T", "A8653C", "T8746A", "G8822A", "C8864T", "G8873A", "A8875G", "G8905C", "A8917G", "C8989T", "C8990T"], "INT": ["E11D", "I84M", "R269K"], "RT-p51": ["V8I", "D123N", "A158S", "Q334H"], "RT-p66": ["V8I", "D123N", "A158S", "Q334H", "L469F", "S554A", "K558R"], "gp120": ["E19D", "A30S", "S52R", "N66D", "D69N", "L101M", "S104R", "-106A", "-109A", "N113S", "-115N", "-116S", "-118D", "-119A", "-120E", "D121G", "-122K", "-123I", "G124T", "I126M", "K141R", "K142E", "H145Y", "K150R", "D157Y", "N160R", "-161T", "-162E", "S216T", "E240K", "L249I", "A253T", "D294A", "G296I", "I298D", "N304K", "K307E", "K332N", "S365G", "N368D", "T370A", "I373-", "T374-", "N378-", "T380-", "K412E", "K414E", "T437-", "T439K"], "gp41": ["E109K", "D163N", "I173L", "V311T"], "nef": ["I16V", "R22Q", "F85L", "G99R", "W102Y", "Q104P", "F135Y", "K178R", "H192R"], "p1": ["K4R"], "p17": ["K26R", "E42D", "D47A", "I64L", "Q65R", "T81A", "A119E", "-125I"], "p24": ["L52F", "T54C", "T171V", "T178S", "T216V"], "p6": ["S14G"], "rev": ["K20R", "S54T", "K105E"], "tat": ["R19K"], "vif": ["I31V", "E63V", "I124L", "N186S", "T188I"], "vpr": ["T89A"], "vpu": ["V7D", "G8F", "-10G", "K44Q", "N73H"]}, "labels": {"aa": "INT: E11D, I84M, R269K; RT-p51: V8I, D123N, A158S, Q334H; RT-p66: V8I, D123N, A158S, Q334H, L469F, S554A, K558R; gp120: E19D, A30S, S52R, N66D, D69N, L101M, S104R, -106A, -109A, N113S, -115N, -116S, -118D, -119A, -120E, D121G, -122K, -123I, G124T, I126M, K141R, K142E, H145Y, K150R, D157Y, N160R, -161T, -162E, S216T, E240K, L249I, A253T, D294A, G296I, I298D, N304K, K307E, K332N, S365G, N368D, T370A, I373-, T374-, N378-, T380-, K412E, K414E, T437-, T439K; gp41: E109K, D163N, I173L, V311T; nef: I16V, R22Q, F85L, G99R, W102Y, Q104P, F135Y, K178R, H192R; p1: K4R; p17: K26R, E42D, D47A, I64L, Q65R, T81A, A119E, -125I; p24: L52F, T54C, T171V, T178S, T216V; p6: S14G; rev: K20R, S54T, K105E; tat: R19K; vif: I31V, E63V, I124L, N186S, T188I; vpr: T89A; vpu: V7D, G8F, -10G, K44Q, N73H"}}}, {"name": "CRF108_BC_NODE_0000002", "node_attrs": {"div": 0.13531, "clade_membership": {"value": "CRF108_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A1771G", "G1972A", "G3094A", "G3463A", "A5576C", "C6214A", "C6217A", "G6323A", "G6336A", "G6807C", "C6855A", "-6967A", "-6970C", "-6971A", "-6972T", "-6973A", "-6974A", "-6975C", "-6976T", "-6977G", "-6978A", "-6979G", "A7100G", "G7108T", "A7113C", "A7151G", "-7162C", "G7631T", "A7641G", "T7642G", "T8287C", "T8568C", "T8595G", "A8666T", "G8682A", "G8905A", "A8947T", "-8970A", "-8971C", "-8972T", "-8973T", "-8974T", "-8975C", "-8976T", "-8977G", "-8978C", "-8979T", "A8980-", "G8991A", "-8997G", "T9000G", "C9006G"], "gp120": ["S318A", "K418N", "N420T"], "gp41": ["D113G"], "nef": ["F85V", "E108D", "V114I", "S188Y", "Y202F"], "rev": ["I21L"], "tat": ["N67T"], "vpu": ["-10A"]}, "labels": {"aa": "gp120: S318A, K418N, N420T; gp41: D113G; nef: F85V, E108D, V114I, S188Y, Y202F; rev: I21L; tat: N67T; vpu: -10A"}}, "children": [{"name": "MT559132", "node_attrs": {"div": 0.15250000000000002, "accession": "MT559132", "clade_membership": {"value": "CRF108_BC"}, "country": {"value": "ES"}, "date": {"value": 2017.0}, "Strain_name": {"value": "P4697"}, "LANL_subtype": {"value": "CRF108_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G224A", "T228A", "T258C", "C288-", "C419T", "T479C", "A509G", "G518A", "G554A", "T575C", "A609G", "G615A", "A644G", "A645G", "A666G", "A678G", "-705A", "-706A", "-707G", "-708A", "-709A", "-710C", "-711A", "-712G", "-713T", "A714-", "A715-", "G716-", "A717-", "T718-", "C719-", "A720-", "G721-", "T722-", "G998A", "A1002G", "C1137A", "A1241G", "A1263T", "A1529G", "A1544G", "C1679T", "T1729C", "A1735G", "-1738T", "C1744-", "A1770G", "G1841A", "A1876G", "A1906G", "C1960T", "A2026G", "T2104C", "A2113C", "G2182A", "C2266T", "T2315C", 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"node_attrs": {"div": 0.13163, "accession": "EF091932", "clade_membership": {"value": "CRF31_BC"}, "country": {"value": "BR"}, "date": {"value": 2002.0}, "Strain_name": {"value": "110PA"}, "LANL_subtype": {"value": "CRF31_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T306A", "A367G", "G388A", "G394A", "A461G", "C521T", "A548G", "T567C", "T581A", "G608C", "G621A", "G667T", "A691C", "G740A", "G755C", "C771G", "A797G", "A866G", "T978G", "T992G", "G1002A", "G1077A", "A1089G", "A1112G", "C1115G", "C1230A", "A1240G", "T1244A", "G1271T", "A1274G", "A1277G", "G1301A", "A1359T", "A1500C", "T1536A", "G1589A", "C1610A", "T1628C", "A1715G", "A1772G", "G1819A", "A1835G", "G1841A", "A1849G", "A1857G", "G1858A", "A1907G", "G1976A", "T1996C", "T2024C", "A2038C", "A2059G", "T2110C", "T2116G", "G2182A", "T2237G", "C2238A", "A2368G", "A2398G", "G2459A", "A2463G", "C2503T", "C2575T", "A2592G", "T2608C", "C2626A", "A2627G", "T2632G", "A2818C", "A2875G", "A2923G", "A2937G", "G3236A", "A3279G", "G3398A", "A3403G", "A3427G", "T3445A", "A3449T", "T3492G", "A3532G", "T3541C", "A3622G", "A3715G", "T3757G", "G3808A", "A3816G", "G3850T", "A3961G", "T4039C", "A4060G", "A4107G", "T4153A", "A4408G", "C4428T", "A4459G", "G4561A", "A4684G", "C4702A", "A4865C", "G5066A", "G5099A", "A5112G", "A5113C", "C5182T", "G5185A", "A5267G", "A5269G", "A5355C", "C5398T", "G5462A", "T5484C", "T5511C", "C5530A", "T5612A", "T5617A", "T5618G", "-5620T", "A5623T", "G5624A", "A5625G", "T5626A", "G5630C", "G5711A", "G5720A", "C5727T", "-5797T", "-5798T", "-5799G", "T5801C", "G5802A", "G5803A", "A5804C", "T5862G", "A5962G", "A6009G", "A6020C", "A6022G", "T6024A", "G6028A", "A6030G", "T6100C", "G6105A", "A6154C", "-6170G", "-6171C", "-6172T", "-6173A", "-6174T", "-6175C", "-6177G", "-6178T", "-6180A", "A6182G", "C6189A", "A6191C", "-6203A", "-6204A", "-6205T", "-6206A", "-6207G", "-6208C", "-6209A", "-6210G", "-6211C", "-6213C", "-6214T", "-6218G", "-6219A", "-6220G", "-6221A", "-6222A", "-6223G", "T6238C", "G6274A", "A6276T", "A6279G", "A6316G", "G6323A", "A6326G", "T6328A", "G6331T", "G6333A", "T6337C", "A6339G", "-6340T", "T6457A", "C6465A", "A6466T", "G6473A", "G6533A", "A6574T", "C6599A", "A6614C", "A6647G", "A6661G", "G6694A", "A6706T", "C6758T", "A6774G", "A6776G", "A6785G", "A6798T", "G6806A", "G6818T", "G6906A", "G6935A", "C6937A", "T6949A", "A6950G", "-6953T", "-6954A", "-6955C", "-6957T", "-6958T", "-6959A", "A6967T", "-6968G", "-6969C", "-6970T", "-6971C", "-6972A", "-6973C", "-6974C", "-6975T", "-6976G", "-6977A", "-6978A", "-6979T", "-6980A", "-6981G", "-6982T", "-6983A", "-6984C", "-6985A", "T6991C", "-6993G", "A6997T", "C6999G", "G7001A", "-7002C", "-7005A", "A7008C", "C7009T", "A7010T", "T7011C", "A7015C", "A7025G", "A7069C", "A7085G", "A7107G", "A7123G", "T7124C", "C7136A", "G7142A", "-7149A", "-7150T", "A7151G", "-7152T", "A7155C", "T7159C", "G7160T", "A7161C", "C7162A", "G7197A", "A7241G", "G7307-", "T7308-", "G7309-", "G7311C", "G7322A", "G7441A", "G7552A", "C7574A", "T7642G", "G7677A", "A7688G", "A7713T", "A7763C", "C7782A", "A7791G", "T7801G", "G7918A", "T7932C", "C7988G", "G7995A", "C8047T", "G8050A", "G8159A", "G8160A", "T8167A", "A8267G", "A8276-", "T8277A", "G8281C", "G8292A", "C8293T", "A8309-", "G8318-", "T8332A", "A8342C", "-8370C", "-8371A", "A8372G", "A8402G", "C8460T", "A8494C", "A8503C", "A8537T", "T8539A", "A8540G", "G8542A", "C8543G", "T8544G", "A8594T", "T8595G", "A8643T", "T8646-", "C8684T", "C8840T", "T8855C", "C8869A", "A8886C", "T8887A", "G8894A", "G8914A", "C8915T", "G8917A", "G8924A", "G8955A", "G8959A"], "INT": ["K14R", "E25D", "K111R", "T218I"], "RT-p51": ["S48E", "E122K", "K166R", "D177E", "I178V", "K281R", "V381I", "K395R", "V435I"], "RT-p66": ["S48E", "E122K", "K166R", "D177E", "I178V", "K281R", "V381I", "K395R", "V435I", "M452L", "I466S"], "gp120": ["M3R", "N52S", "I56L", "V57D", "E59G", "W84*", "-105D", "-106A", "-107I", "-109Q", "N111S", "-112N", "-116T", "-117I", "-118D", "-119M", "-123K", "K141I", "K142R", "-160N", "-161S", "-162S", "N201K", "T204N", "G207R", "V227I", "E240D", "L249I", "K254Q", "H259Q", "H302Y", "K307R", "T308A", "N311E", "Q315L", "G318S", "A322S", "R351K", "G361R", "S365R", "T366A", "-368F", "-370S", "-374T", "-376N", "-377S", "-378T", "-379G", "-381E", "A382T", "-383S", "-384T", "-385I", "I386M", "T387V", "R391G", "I411V", "K418R", "G430R", "K432N", "-433V", "-434T", "-436S", "R448K", "I463V"], "gp41": ["V2A", "G3L", "I4-", "V7M", "L91I", "D113E", "S125N", "N129D", "D137V", "K154Q", "S160N", "D163G", "I210T", "Q229E", "R231K", "I322V", "I325-", "G339-", "F340-"], "nef": ["Y102-", "A176E", "M182Q", "R191H", "R192K", "M194I", "D205N", "C206Y"], "p17": ["E11G", "R18K", "R20K", "G55A", "L64I", "K91N", "D96N", "S111I"], "p24": ["P14A", "L83V", "H87Q", "V91I", "A116T", "S120G", "D128E", "K170R", "E180D", "T210S"], "p6": ["S47N"], "p7": ["T12P", "L24I", "D48E"], "pro": ["I13V", "V15I", "K20R", "K37E", "D60N", "L63P"], "rev": ["S5R", "A47G", "P67S", "A68T", "G104E", "C107S"], "tat": ["R29K", "S75P"], "vif": ["K33R", "G93S", "K176A"], "vpr": ["Q3R", "T55A", "I84L"]}, "labels": {"aa": "INT: K14R, E25D, K111R, T218I; RT-p51: S48E, E122K, K166R, D177E, I178V, K281R, V381I, K395R, V435I; RT-p66: S48E, E122K, K166R, D177E, I178V, K281R, V381I, K395R, V435I, M452L, I466S; gp120: M3R, N52S, I56L, V57D, E59G, W84*, -105D, -106A, -107I, -109Q, N111S, -112N, -116T, -117I, -118D, -119M, -123K, K141I, K142R, -160N, -161S, -162S, N201K, T204N, G207R, V227I, E240D, L249I, K254Q, H259Q, H302Y, K307R, T308A, N311E, Q315L, G318S, A322S, R351K, G361R, S365R, T366A, -368F, -370S, -374T, -376N, -377S, -378T, -379G, -381E, A382T, -383S, -384T, -385I, I386M, T387V, R391G, I411V, K418R, G430R, K432N, -433V, -434T, -436S, R448K, I463V; gp41: V2A, G3L, I4-, V7M, L91I, D113E, S125N, N129D, D137V, K154Q, S160N, D163G, I210T, Q229E, R231K, I322V, I325-, G339-, F340-; nef: Y102-, A176E, M182Q, R191H, R192K, M194I, D205N, C206Y; p17: E11G, R18K, R20K, G55A, L64I, K91N, D96N, S111I; p24: P14A, L83V, H87Q, V91I, A116T, S120G, D128E, K170R, E180D, T210S; p6: S47N; p7: T12P, L24I, D48E; pro: I13V, V15I, K20R, K37E, D60N, L63P; rev: S5R, A47G, P67S, A68T, G104E, C107S; tat: R29K, S75P; vif: K33R, G93S, K176A; vpr: Q3R, T55A, I84L"}}}, {"name": "CRF31_BC_NODE_0000001", "node_attrs": {"div": 0.10537999999999999, "clade_membership": {"value": "CRF31_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A810G", "A1050T", "C1986T", "T2719C", "T3045C", "G4708A", "C4728A", "A4863G", "G5363A", "A5615C", "G5800T", "T5807C", "G5808A", "-5810T", "-5811G", "A6158C", "G6336A", "G6638A", "A6639C", "G7668A", "A7732G", "A7781T", "A8273G", "C8469T", "A8522G", "C8676T", "A8815C"], "RT-p51": ["V317A"], "RT-p66": ["V317A", "K554N"], "gp120": ["N102H", "E262T"], "gp41": ["R122K"], "nef": ["E158A"], "p24": ["I27V", "T107S"], "vif": ["R41K", "H48N"]}, "labels": {"aa": "RT-p51: V317A; RT-p66: V317A, K554N; gp120: N102H, E262T; gp41: R122K; nef: E158A; p24: I27V, T107S; vif: R41K, H48N"}}, "children": [{"name": "AY727526", "node_attrs": {"div": 0.13162, "accession": "AY727526", "clade_membership": {"value": "CRF31_BC"}, "country": {"value": "BR"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04BR137"}, "LANL_subtype": {"value": "CRF31_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C379A", "C417A", "A426T", "G498T", "G524A", "A585G", "C586T", "G608A", "A632G", "A645G", "A652C", "C747A", "A758G", "C780G", "A839G", "A852T", "A866G", "A878C", "C879A", "A880C", "T897C", "A977G", "C1103T", "A1112G", "C1261G", "A1263T", "A1359T", "A1452T", "A1461G", "A1487G", "A1495G", "C1501A", "T1676C", "C1714A", "-1729T", "-1730T", "-1731G", "-1732G", "-1733G", "-1734G", "T1735A", "C1736A", "G1740A", "A1741C", "G1742A", "A1743G", "C1748T", "C1756G", "A1768C", "A1771C", "G1777A", "-1782C", "-1783T", "-1784G", "-1785T", "-1786C", "-1787T", "A1794G", "A1804G", "A1906G", "A1969G", "G1972A", "A2002G", "T2024C", "G2065A", "T2146C", "G2221A", "G2422A", "T2499C", "A2509G", "T2542C", "C2596T", "T2605C", "T2740C", "C2909T", "G2925A", "A3080C", "A3124G", "C3133T", "G3142A", "A3251G", "C3252T", "T3253G", "T3399C", "T3550C", "T3628C", "A3675G", "G3808C", "A3866G", "A3876G", "T3977C", "G4046A", "A4130C", "G4131C", "C4140T", "A4408G", "A4459G", "A4498C", "T4569C", "A4581G", "A4622G", "A4684G", "G4693A", "A4697G", "C4757T", "G4766A", "G4774A", "A4786T", "T4799C", "A4847G", "G4850A", "A4911G", "C4965T", "C5027T", "G5045A", "G5087A", "A5159G", "A5269G", "T5293A", "G5312A", "T5319A", "A5444C", "A5480T", "T5492A", "G5538A", "T5579C", "T5616A", "-5620A", "T5684C", "A5689C", "A5737G", "G5748A", "-5809A", "G5907A", "T5980C", "A6061T", "T6151C", "A6154G", "C6160T", "A6164G", "G6165T", "G6167A", "-6170G", "-6171C", "-6172T", "-6173A", "-6174A", "-6175C", "-6177G", "-6178C", "-6180G", "C6183G", "A6185G", "A6186C", "C6189A", "A6192G", "-6203C", "-6204A", "-6205C", "-6206A", "-6207A", "-6208C", "-6209A", "-6210T", "-6211C", "-6213G", "-6214C", "-6218G", "-6219A", "-6220G", "-6221A", "-6222A", "-6223G", "C6263T", "A6286G", "C6287T", "T6306C", "G6323A", "T6325G", "A6326G", "T6328G", "-6340C", "G6345C", "G6368A", "A6374G", "G6392A", "C6394T", "A6413T", "A6461G", "A6466C", "C6540G", "G6572A", "G6577A", "C6599A", "A6622C", "G6631T", "A6664G", "G6683C", "A6689G", "A6718C", "C6766T", "A6773G", "A6786G", "A6849G", "C6855A", "G6859T", "A6905G", "G6935A", "C6938A", "A6947T", "G6948A", "-6957A", "-6958T", "-6959A", "-6983G", "-6984A", "-6985A", "G6987A", "T6988C", "A6990T", "-6993A", "A6995G", "C6996A", "G6998A", "-7002G", "T7003A", "-7005C", "A7012T", "A7037T", "T7124A", "-7149G", "-7150G", "-7152C", "C7153T", "A7154G", "A7158C", "G7160A", "G7168A", "T7267C", "C7313A", "G7477A", "A7626T", "G7744A", "A7750G", "G7790A", "A7800G", "T7813C", "T7921G", "A7936G", "C7941A", "A7998G", "C8044A", "G8050A", "A8093C", "C8106T", "C8213T", "T8257C", "G8274C", "A8294C", "C8296T", "G8304C", "T8323G", "A8353C", "A8363G", "T8364-", "G8365-", "T8366-", "A8367-", "G8368-", "T8369-", "A8372-", "G8373-", "T8374-", "G8375-", "G8412C", "A8441G", "C8460T", "C8492T", "A8537G", "T8595G", "C8651A", "G8732A", "A8886C", "T8887A", "G8991T", "C9012A"], "INT": ["E11D", "I31V", "K34R", "A91T", "S119P", "T122I", "V265A", "K269R", "S283G"], "RT-p51": ["S123N", "I135T", "P272S", "R277K", "I329L", "T386V", "V435A"], "RT-p66": ["S123N", "I135T", "P272S", "R277K", "I329L", "T386V", "V435A", "K527R"], "gp120": ["R18K", "E69D", "S104V", "N108-", "T110-", "-112A", "-116S", "-117A", "-118N", "-119R", "-120T", "-121S", "-122N", "-123K", "H145Y", "L151P", "N157K", "N159D", "-160S", "-161D", "-162E", "R164T", "A172T", "T174A", "V180I", "I187L", "K203E", "T229S", "E240K", "L249I", "E265K", "E277Q", "I279V", "K307E", "N311R", "N332S", "T334K", "K335N", "R351G", "G361S", "L362M", "S365Y", "-368N", "N369-", "T371-", "-374T", "-375E", "-376N", "-377I", "-378N", "-379E", "-381G", "-383N", "-384I", "-385T", "T387-", "I388-", "I395F", "L424I", "K432R", "-433T", "-434D", "N435T", "-436N"], "gp41": ["Q108L", "D163N", "K166S", "F206L", "P213Q", "D232G", "D247E", "I264L", "A268V", "K286G", "L304F", "R324A", "N331H", "R334T", "F340L"], "nef": ["K4T", "C8-", "S9-", "V11-", "H40Y", "F85V", "M182Q"], "p17": ["T15N", "Q28K", "M31L", "G55S", "L64I", "T84V", "I104V", "E106A"], "p2": ["T10S", "-12V", "I13-"], "p24": ["L6I", "P17A", "T41S", "Q50T", "A177G", "T178S", "T210S"], "p6": ["A12E", "-18G", "-19E", "E21T", "T22A", "P26R", "Q30P", "K31T", "R33K", "-35L", "-36S", "T39A", "K42R"], "p7": ["K10R", "T12N"], "pro": ["I36M", "M89I"], "rev": ["S8N", "K30E", "A68T", "N82T"], "tat": ["N23T", "Q35L", "L39Q", "L68P", "Q76R"], "vif": ["K33R", "S36N", "R63K", "K67I", "I87M", "M109V", "H127Y"], "vpr": ["T19A", "V70I", "F72Y"], "vpu": ["V7-", "G8-", "I9-", "V26A", "I28L", "K44E"]}, "labels": {"aa": "INT: E11D, I31V, K34R, A91T, S119P, T122I, V265A, K269R, S283G; RT-p51: S123N, I135T, P272S, R277K, I329L, T386V, V435A; RT-p66: S123N, I135T, P272S, R277K, I329L, T386V, V435A, K527R; gp120: R18K, E69D, S104V, N108-, T110-, -112A, -116S, -117A, -118N, -119R, -120T, -121S, -122N, -123K, H145Y, L151P, N157K, N159D, -160S, -161D, -162E, R164T, A172T, T174A, V180I, I187L, K203E, T229S, E240K, L249I, E265K, E277Q, I279V, K307E, N311R, N332S, T334K, K335N, R351G, G361S, L362M, S365Y, -368N, N369-, T371-, -374T, -375E, -376N, -377I, -378N, -379E, -381G, -383N, -384I, -385T, T387-, I388-, I395F, L424I, K432R, -433T, -434D, N435T, -436N; gp41: Q108L, D163N, K166S, F206L, P213Q, D232G, D247E, I264L, A268V, K286G, L304F, R324A, N331H, R334T, F340L; nef: K4T, C8-, S9-, V11-, H40Y, F85V, M182Q; p17: T15N, Q28K, M31L, G55S, L64I, T84V, I104V, E106A; p2: T10S, -12V, I13-; p24: L6I, P17A, T41S, Q50T, A177G, T178S, T210S; p6: A12E, -18G, -19E, E21T, T22A, P26R, Q30P, K31T, R33K, -35L, -36S, T39A, K42R; p7: K10R, T12N; pro: I36M, M89I; rev: S8N, K30E, A68T, N82T; tat: N23T, Q35L, L39Q, L68P, Q76R; vif: K33R, S36N, R63K, K67I, I87M, M109V, H127Y; vpr: T19A, V70I, F72Y; vpu: V7-, G8-, I9-, V26A, I28L, K44E"}}}, {"name": "AY727527", "node_attrs": {"div": 0.12904, "accession": "AY727527", "clade_membership": {"value": "CRF31_BC"}, "country": {"value": "BR"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04BR142"}, "LANL_subtype": {"value": "CRF31_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G90C", "C96T", "A133G", "C150T", "T200G", "A214G", "A360C", "A400G", "C435T", "G491A", "C499G", "G518A", "A519C", "C521A", "A525C", "C540A", "A561G", "T587C", "C618A", "C635A", "T695A", "A697C", "C698G", "A699G", "A700C", "A701T", "A704C", "-705A", "-706A", "-707A", "-708G", "-709G", "-710A", "-711A", "-712A", "-713T", "A714-", "A715-", "G716-", "C749T", "T777G", "A899G", "G1173A", "T1174C", "A1259G", "A1277G", "G1301A", "G1313A", "A1329T", "G1349A", "C1615A", "A1642G", "A1673G", "A1709G", "A1771G", "A1849G", "A2029G", "C2202A", "G2210A", "A2223G", "T2257C", "A2404C", "A2463G", "C2575T", "A2738G", "C2739A", "C2828G", "A2839T", "T2845G", "A2923G", "G2951A", "G3221A", "C3274T", "A3279G", "G3293A", "A3403G", "A3491T", "T3492G", "A3532G", "T3541C", "G3544A", "C3545T", "A3666T", "A3676C", "A3682G", "T3712C", "T3889C", "C4105T", "C4141A", "T4177C", "A4420G", "T4640C", "T4761C", "G4769A", "T4799A", "G4802A", "A4845C", "A4888G", "C4889T", "A4900G", "C4937A", "A5007C", "A5024G", "G5062T", "G5099A", "A5113G", "T5147A", "A5200G", "C5237T", "G5382T", "C5397A", "T5454C", "T5484G", "A5613T", "T5616C", "-5620C", "T5621C", "T5626G", "G5632A", "A5640C", "A5644T", "C5653T", "T5787C", "-5809A", "C5824A", "A5845C", "A5846C", "T5862G", "G5866A", "A5879C", "A5911T", "T5956G", "C6004T", "G6029C", "C6163T", "A6176-", "A6179G", "-6180C", "C6183A", "T6184C", "A6186G", "T6187A", "C6190A", "A6191C", "A6193C", "C6195A", "A6197G", "A6201C", "-6213T", "-6214A", "A6215G", "T6217G", "T6242A", "A6275G", "A6276G", "A6279G", "T6325A", "A6327G", "A6329G", "A6335T", "A6338G", "-6340A", "T6421C", "C6441T", "C6465A", "A6505G", "A6581G", "A6602T", "A6635C", "A6649T", "A6654C", "C6660T", "A6661G", "A6682G", "A6787C", "A6789G", "C6875T", "-6953T", "-6954A", "-6955C", "-6968T", "-6969A", "-6970C", "-6971A", "-6972A", "-6973T", "-6974A", "-6975G", "-6976T", "-6977A", "-6978C", "-6979A", "-6980G", "-6981T", "-6982T", "-6993C", "T6994A", "-7002A", "-7005T", "C7064A", "A7094G", "T7095C", "A7107T", "T7114C", "G7146A", "C7147-", "A7148-", "A7151-", "T7156G", "G7322T", "C7328T", "G7369A", "A7394C", "A7402G", "G7441A", "T7498C", "A7519C", "T7537A", "T7588C", "G7589A", "C7590A", "A7629C", "G7630A", "A7688G", "A7689G", "C7692T", "T7703A", "G7717A", "T7801A", "C7876T", "T7929G", "T7932C", "A7938T", "G7965A", "A8006G", "T8008G", "A8069T", "T8094C", "T8155C", "G8158A", "G8159A", "G8160A", "T8279G", "G8292A", "G8368T", "-8370C", "-8371C", "A8400C", "A8432G", "C8488G", "C8491A", "C8597T", "C8651T", "A8655C", "C8684T", "A8746T", "A8762C", "G8780A", "C8832T", "A8837T", "G8868A", "T8883C", "A8947T", "G9007T", "A9009G", "G9035A", "G9049A", "G9063A", "C9078-", "T9084A", "G9085A"], "RT-p51": ["A36E", "D39N", "K43R", "K103N", "T215D", "Q245E", "E248D", "D250E", "A286T", "A376T", "K395R", "A400T"], "RT-p66": ["A36E", "D39N", "K43R", "K103N", "T215D", "Q245E", "E248D", "D250E", "A286T", "A376T", "K395R", "A400T", "I466C", "Q524L", "K527N"], "gp120": ["M3R", "T9P", "E19D", "D34E", "E59Q", "-105D", "-106A", "-107N", "N108R", "-109T", "T110H", "-112G", "N113T", "S114I", "S115V", "S130T", "K141G", "K142R", "L156-", "N157-", "E158-", "N159-", "Y163-", "R164-", "I166E", "N167S", "A196V", "T204K", "I243V", "T250S", "H259Q", "K261Q", "E265N", "N267T", "T269M", "K312R", "-368Y", "-370S", "-372V", "-379N", "-381T", "-383D", "-384V", "-385N", "I414A", "K418I", "G431D", "-436D"], "gp41": ["I4L", "V7L", "L9F", "D78E", "A96N", "E109A", "N129G", "T130I", "L134M", "L209R", "I210T", "N212I", "G221E", "I235V", "S256C", "I264T", "R324G", "W326G", "C330Y"], "nef": ["S9I", "-10P", "I20L", "G29R", "P49R", "A50D", "K105Q", "Y135F", "A176T", "Y202F"], "p1": ["K4R"], "p17": ["K22R", "M61I", "N62Q", "Q69K", "I76V", "A119E", "D121A", "K122A", "-125G", "-126N"], "p24": ["S16A", "V148T", "T200S"], "p6": ["K31R"], "p7": ["T50N"], "rev": ["K30N", "H53R", "S54A", "Q74L", "F103L", "G104K"], "tat": ["E2D", "N7K", "L74V", "S75P", "T77S", "E86K"], "vif": ["I87L", "D101G", "Q105R", "D117E", "K141Q", "R159I", "K176R", "H187Q"], "vpr": ["Y15N", "H45Y", "A93S"], "vpu": ["-2F", "-3T", "-4L", "-5P", "-6E", "-10G", "I13L", "H73N", "N80P"]}, "labels": {"aa": "RT-p51: A36E, D39N, K43R, K103N, T215D, Q245E, E248D, D250E, A286T, A376T, K395R, A400T; RT-p66: A36E, D39N, K43R, K103N, T215D, Q245E, E248D, D250E, A286T, A376T, K395R, A400T, I466C, Q524L, K527N; gp120: M3R, T9P, E19D, D34E, E59Q, -105D, -106A, -107N, N108R, -109T, T110H, -112G, N113T, S114I, S115V, S130T, K141G, K142R, L156-, N157-, E158-, N159-, Y163-, R164-, I166E, N167S, A196V, T204K, I243V, T250S, H259Q, K261Q, E265N, N267T, T269M, K312R, -368Y, -370S, -372V, -379N, -381T, -383D, -384V, -385N, I414A, K418I, G431D, -436D; gp41: I4L, V7L, L9F, D78E, A96N, E109A, N129G, T130I, L134M, L209R, I210T, N212I, G221E, I235V, S256C, I264T, R324G, W326G, C330Y; nef: S9I, -10P, I20L, G29R, P49R, A50D, K105Q, Y135F, A176T, Y202F; p1: K4R; p17: K22R, M61I, N62Q, Q69K, I76V, A119E, D121A, K122A, -125G, -126N; p24: S16A, V148T, T200S; p6: K31R; p7: T50N; rev: K30N, H53R, S54A, Q74L, F103L, G104K; tat: E2D, N7K, L74V, S75P, T77S, E86K; vif: I87L, D101G, Q105R, D117E, K141Q, R159I, K176R, H187Q; vpr: Y15N, H45Y, A93S; vpu: -2F, -3T, -4L, -5P, -6E, -10G, I13L, H73N, N80P"}}}]}]}, {"name": "results/subtype_trees/CRF60_BC.nwk", "node_attrs": {"div": 0.12722, "clade_membership": {"value": "CRF60_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C30T", "C96T", "G162T", "A360C", "G394A", "C419T", "C499G", "A525T", "A549T", "T570C", "A576G", "C623T", "A660-", "A661-", "C662-", "A663-", "A664-", "A665-", "T668G", "A676C", "A682G", "T734C", "G740A", "T746C", "G791A", "G806A", "T824C", "C827T", "C875T", "A914G", "T992A", "C1004A", "G1005C", "C1006A", "A1016G", "A1017C", "A1089G", "G1090C", "A1145G", "T1292G", "A1293T", "T1322C", "G1430A", "G1443C", "C1541T", "G1619A", "A1642G", "G1697A", "-1729T", "-1730C", "-1731G", "-1732A", "-1733G", "T1735-", "C1736-", "G1740A", "A1741C", "G1742A", "A1745-", "A1746-", "C1747-", "C1748-", "C1749-", "C1750-", "T1752C", "T1754G", "C1790T", "C1826G", "T1828C", "T1905C", "C1985A", "A2056G", "G2065A", "C2107T", "A2287G", "G2290A", "G2293A", "G2305A", "C2326T", "G2329A", "C2335T", "A2341G", "T2356C", "A2362G", "G2374A", "C2383T", "A2386C", "A2407G", "G2413A", "G2431T", "T2452C", "G2456T", "C2464T", "G2470A", "A2473G", "C2485T", "A2509G", "G2548A", "G2714A", "A2726C", "A2839C", "A2956G", "A3058G", "A3061G", "G3085A", "A3127G", "A3145G", "T3225A", "C3232T", "A3265G", "A3280G", "G3340A", "T3412C", "G3451A", "A3592T", "C3649T", "A3664G", "T3668C", "A3683C", "C3688T", "T3712C", "T3757G", "A3768G", "T3793C", "G3808T", "G3846A", "C3908T", "C4006A", "A4195G", "T4276C", "C4428T", "A4528C", "A4546C", "C4645T", "A4697T", "T4702A", "C4757A", "G4802A", "C4844A", "C4871T", "C4890T", "A4911G", "T5081C", "T5194A", "A5233G", "C5294T", "G5296A", "C5303T", "C5333T", "A5355G", "T5415C", "G5437C", "A5461C", "C5554T", "G5563A", "T5579C", "T5611C", "T5612-", "A5613G", "T5617A", "T5618G", "C5651G", "C5658A", "C5678T", "A5703G", "A5788G", "G5791-", "A5792-", "G5793-", "G5794-", "A5795-", "A5796-", "-5801A", "-5809G", "G5812A", "T5813C", "G5814-", "G5815A", "A5816T", "T5817G", "A5818G", "T5851G", "G5902A", "G5965A", "C5989A", "A6020C", "A6022G", "G6023C", "A6040T", "C6052T", "A6092G", "-6167A", "A6176-", "A6179-", "T6181-", "A6182G", "A6311G", "T6325G", "A6329G", "A6373G", "T6395A", "C6396G", "A6461G", "A6520C", "A6544G", "A6573G", "C6599T", "G6631T", "T6641G", "A6649C", "A6654C", "A6659G", "C6660A", "C6670T", "T6763C", "A6774G", "A6776G", "A6787C", "A6801C", "G6802A", "A6849T", "C6855G", "A6859C", "C6875T", "A7007-", "A7033G", "A7107G", "A7108C", "G7138A", "C7153T", "A7155-", "T7156C", "A7158C", "T7159-", "G7160-", "A7163-", "C7164-", "A7165-", "A7189G", "A7241C", "G7307-", "T7308-", "G7309-", "G7311C", "G7322A", "G7369A", "G7411A", "G7477A", "C7510T", "A7517C", "A7533G", "C7546T", "A7632C", "T7642G", "G7701C", "G7702T", "G7807C", "T7852C", "C8047T", "G8180A", "T8184A", "G8188A", "A8194G", "G8197T", "T8209C", "C8210T", "T8223C", "A8245G", "G8274T", "C8290T", "-8370A", "A8393G", "A8400C", "A8402G", "A8429G", "A8432G", "C8436G", "C8440T", "A8446G", "T8451C", "A8453G", "T8456A", "C8469A", "C8477T", "C8480T", "C8483T", "A8484-", "C8485-", "A8486-", "C8487-", "C8488-", "T8489-", "G8490C", "C8491T", "C8492T", "G8499C", "G8508A", "G8516A", "G8517A", "A8534T", "A8537G", "A8540G", "C8543T", "A8564T", "T8585C", "A8594T", "C8597A", "C8603T", "T8607C", "T8608A", "A8652C", "G8654A", "A8655C", "A8662G", "C8666T", "C8669A", "T8687C", "C8699T", "C8702T", "A8729G", "A8754T", "C8755G", "T8786G", "C8789G", "C8790A", "A8793-", "G8794-", "G8795-", "G8796-", "A8797-", "A8798-", "G8799-", "T8800-", "A8801-", "G8802-", "A8803-", "A8804-", "G8805A", "C8809A", "A8824G", "A8827G", "C8832T", "G8848A", "G8852A", "T8867C", "G8868C", "A8870G", "T8903C", "A8912G", "C8913T", "G8914T", "A8916C", "G8917A", "A8918T", "C8930A", "C8934A", "T8935A", "A8936G", "T8948C", "A8950T", "C8966G", "A8967C", "-8970G", "-8971T", "-8972T", "-8973T", "-8975C", "-8976T", "-8977A", "-8978C", "-8979A", "-8997G", "C9006G", "C9029T", "C9040A", "A9042G"], "INT": ["E11D", "S24N", "T218I"], "RT-p51": ["D121Y", "E207K", "K211Q", "E248D"], "RT-p66": ["D121Y", "E207K", "K211Q", "E248D", "M452I", "K558R"], "gp120": ["I56L", "V57L", "I80V", "I153V", "D157E", "N159E", "I173M", "K203E", "E240G", "S263A", "E265N", "N267T", "T269E", "K307R", "T308A", "E316A", "K329-", "K332I", "T334R", "K335N", "S365N", "Y367-", "N369-", "K418S", "K432T", "T437-", "I463L"], "gp41": ["V2A", "G3L", "I4-", "V7M", "I72L", "K77R", "E110A", "D113E", "R133N", "S160T", "G293S", "L294Q", "K298N", "I307T", "R324I", "C330L"], "nef": ["I20L", "P32A", "A33V", "Q35R", "D38E", "L43I", "T48L", "P49N", "A50-", "N51-", "A53P", "A56T", "E59K", "F85L", "F89H", "K104Q", "K105Q", "Q107R", "T138C", "D149E", "P150T", "R151K", "E152D", "V153I", "E155-", "A156-", "N157-", "E158-", "N161S", "N162S", "S169N", "R191F", "R192H", "L198K", "Y203F"], "p1": ["K4R"], "p17": ["R20K", "T72S", "Y79H", "T81A", "N109R", "K110-", "S111-", "Q112-", "Q113-", "K114-", "T115-", "A118T"], "p2": ["V7L"], "p24": ["H87Q", "A92Q", "M96L", "S120A", "D187E", "T188S"], "p6": ["P26-", "L50S"], "pro": ["L10V", "I36T", "L63T", "M89I"], "rev": ["P67S", "F73L", "G111E", "A114T", "K116E", "E117*"], "tat": ["A21P", "L68P"], "vif": ["T20I", "F39Y", "M109V"], "vpr": ["I84V"], "vpu": ["I9V", "-10G", "A15G", "T24I", "T61A", "E65D", "-68V", "V69-", "M71-", "L82V"]}, "labels": {"aa": "INT: E11D, S24N, T218I; RT-p51: D121Y, E207K, K211Q, E248D; RT-p66: D121Y, E207K, K211Q, E248D, M452I, K558R; gp120: I56L, V57L, I80V, I153V, D157E, N159E, I173M, K203E, E240G, S263A, E265N, N267T, T269E, K307R, T308A, E316A, K329-, K332I, T334R, K335N, S365N, Y367-, N369-, K418S, K432T, T437-, I463L; gp41: V2A, G3L, I4-, V7M, I72L, K77R, E110A, D113E, R133N, S160T, G293S, L294Q, K298N, I307T, R324I, C330L; nef: I20L, P32A, A33V, Q35R, D38E, L43I, T48L, P49N, A50-, N51-, A53P, A56T, E59K, F85L, F89H, K104Q, K105Q, Q107R, T138C, D149E, P150T, R151K, E152D, V153I, E155-, A156-, N157-, E158-, N161S, N162S, S169N, R191F, R192H, L198K, Y203F; p1: K4R; p17: R20K, T72S, Y79H, T81A, N109R, K110-, S111-, Q112-, Q113-, K114-, T115-, A118T; p2: V7L; p24: H87Q, A92Q, M96L, S120A, D187E, T188S; p6: P26-, L50S; pro: L10V, I36T, L63T, M89I; rev: P67S, F73L, G111E, A114T, K116E, E117*; tat: A21P, L68P; vif: T20I, F39Y, M109V; vpr: I84V; vpu: I9V, -10G, A15G, T24I, T61A, E65D, -68V, V69-, M71-, L82V", "clade": "CRF60_BC"}}, "children": [{"name": "CRF60_BC_NODE_0000001", "node_attrs": {"div": 0.13208, "clade_membership": {"value": "CRF60_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A426C", "A653G", "C1118T", "A1127G", "A1452G", "T1536C", "C1706A", "A2023G", "A2570G", "G2630A", "T3399G", "A3706G", "A3955T", "A4094C", "G4219A", "C4472G", "T5018G", "A5325G", "T5327G", "A5385C", "C5513A", "G5561A", "A5581G", "-5791G", "-5792A", "-5794G", "-5795A", "-5796A", "-5797T", "-5798T", "-5799G", "G5802T", "G5803A", "A5805C", "A5812-", "C5813-", "A5815-", "T5816-", "G5817-", "G5818-", "T5986C", "G6121A", "-6170G", "-6171T", "-6172T", "-6173A", "-6174A", "-6175C", "-6176A", "-6177A", "-6178T", "-6179A", "-6180A", "-6181T", "A6186C", "A6188G", "A6194G", "A6197C", "G6198C", "-6201G", "-6217G", "-6218C", "-6219A", "-6220G", "G6314A", "-6340C", "A6881G", "-6967T", "-6971A", "-6974A", "-6975A", "-6979A", "-6980A", "-6984A", "-6985A", "-6990A", "-6991C", "-6992A", "-6997A", "A7015G", "T7105C", "-7165C", "A7626T", "C7701A", "G7712A", "A7800G", "G7995A", "T8215C", "G8216A", "C8221T", "A8227T", "A8236G", "A8242G", "G8264A", "A8284G", "G8292T", "A8294C", "A8303G", "G8304T", "T8323G", "C8328G", "G8330A", "C8331T", "A8337T", "A8342G", "G8348T", "A8349G", "A8350G", "T8369C", "G8528A", "T8595C", "A8812T", "A8847C", "A8859G", "C8904A", "T8993C", "A9009G", "C9012T"], "INT": ["P233A"], "RT-p51": ["I159V", "V179I", "V435G"], "RT-p66": ["I159V", "V179I", "V435G"], "gp120": ["V154I", "I343V"], "gp41": ["Q108L", "E137K", "N166S", "R231K", "D305N", "V321I", "N331H", "R334V", "F340L", "A342G", "A343I", "Q345L"], "nef": ["N3G", "N169H", "M173V"], "p17": ["M31L"], "p2": ["N11A", "-12N"], "p6": ["S25P"], "rev": ["V16I"], "tat": ["S46Y", "S62N", "E63K", "I69V"], "vpr": ["I74V"]}, "labels": {"aa": "INT: P233A; RT-p51: I159V, V179I, V435G; RT-p66: I159V, V179I, V435G; gp120: V154I, I343V; gp41: Q108L, E137K, N166S, R231K, D305N, V321I, N331H, R334V, F340L, A342G, A343I, Q345L; nef: N3G, N169H, M173V; p17: M31L; p2: N11A, -12N; p6: S25P; rev: V16I; tat: S46Y, S62N, E63K, I69V; vpr: I74V"}}, "children": [{"name": "KC899079", "node_attrs": {"div": 0.14941000000000002, "accession": "KC899079", "clade_membership": {"value": "CRF60_BC"}, "country": {"value": "IT"}, "date": {"value": 2011.0}, "Strain_name": {"value": "BAV499"}, "LANL_subtype": {"value": "CRF60_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T82A", "G83A", "C84T", "C456T", "A561G", "C747A", "C767T", "A1116C", "A1289G", "G1311T", "C1322T", "A1475G", "A1643G", "A1694G", "C1828T", "T1866C", "T1956C", "A1985G", "A2191G", "A2579G", "T2735C", "A2738G", "G2752A", "T2784C", "T3181C", "A3291G", "C3405T", "A3451G", "A3491G", "T3493C", "G3494A", "C3620A", "A3646G", "A3659G", "T3844C", "C3861T", "A4408G", "C4471T", "C4543T", "T4645C", "T4655C", "A4735G", "G4765A", "G4770A", "A4786C", "G4797A", "G4829A", "T4871A", "T4890C", "C4988T", "T5102C", "A5154C", "C5237T", "A5257C", "T5331G", "G5355A", "G5365A", "A5366T", "A5369G", "A5372G", "C5385T", "G5386C", "T5391A", "C5392A", "C5415A", "G5420A", "A5607T", "T5609G", "-5612A", "-5614C", "-5620T", "G5650A", "G5747A", "A5757G", "G5761A", "G5783A", "-5793G", "C5824T", "T5859C", "A5860T", "T5862C", "G5863A", "G5865A", "G5866A", "C5869A", "A5884C", "A5902G", "G5939T", "A6191T", "A6338G", "A6840G", "T6892C", "A6893-", "A6944G", "-6961T", "-6962A", "-6963C", "-6968G", "-6969G", "-6970G", "-6972T", "-6973A", "-6976G", "-6981G", "-6982G", "-6983T", "-6986T", "-6987A", "-6989T", "-6993C", "-6994T", "-6995T", "-6996C", "-6998G", "-6999G", "-7000A", "-7001A", "-7002A", "-7003C", "-7149A", "-7150T", "-7152G", "T7153C", "-7155C", "C7156G", "C7158A", "G7890T", "A7891T", "G7892T", "G7900A", "G7915A", "T7921G", "A7937G", "A7938G", "G7957A", "C7960T", "G7961A", "G7965A", "G7973A", "G7982A", "G7983A", "T8047C", "T8101C", "G8102A", "G8113A", "G8125A", "G8134C", "G8135A", "G8158A", "G8243A", "G8253A", "A8267T", "T8274G", "A8276T", "G8281T", "G8283A", "T8304C", "G8307A", "G8317A", "G8319A", "G8327A", "G8376A", "G8392A", "G8393A", "A8396G", "G8402A", "G8453A", "G8463A", "G8464A", "T8505C", "G8526A", "G8531A", "G8537A", "G8540A", "G8541A", "G8588A", "G8736A", "C8740T", "C8751T", "G8818A", "C8849A", "G8856A", "A9040T", "G9042A", "G9085A", "T9167A", "G9168A", "C9169T"], "INT": ["P29L"], "RT-p51": ["S162G", "F214L", "T215A", "M230T", "E399G", "A437V"], "RT-p66": ["S162G", "F214L", "T215A", "M230T", "E399G", "A437V", "I452M", "I466V", "V467I", "Q509K", "I522V"], "gp120": ["V2A", "M3T", "G4E", "N5K", "D29Y", "S104-", "N108-", "T110-", "N113-", "S114-", "-160S", "-161S", "-162D", "-328R", "S347-", "-372G", "-373I", "-374K", "-381K", "-382S", "-383S", "-384G", "-385N", "T432N", "-433S", "-434T", "-436E", "-437T", "E438-", "T439-"], "gp41": ["R196I", "V197F", "F206L", "N212G", "G220R", "G221E", "E224K", "G227K", "A267T", "G278R", "G314R", "R317K", "I322L", "I324R", "I325F", "W326C", "R327K", "V334A", "R335K", "G339D", "G342R"], "nef": ["G12R", "R17K", "G41K", "C55R", "E62K", "E64D", "G67S", "G132R", "T133I", "-155E", "G159-", "H169Q", "G172R"], "p17": ["I76V"], "p24": ["L6I", "I129L", "A194S"], "p6": ["S50L"], "pro": ["L23P", "F53S", "T63A"], "rev": ["K30R", "A37T", "R38*", "R42K", "W45*", "S67P", "C85H", "G89S", "G93R", "G96Q", "G104R"], "tat": ["V4L", "D5E", "P6T", "H13Q", "G15E", "P60S", "T77A", "G83D", "S84L", "E86K"], "vif": ["I20T", "K50R", "G60E", "A62T", "K67T", "G71S", "S95R", "N190H"], "vpr": ["E17A", "H45Y", "C76G", "V84I", "R87N", "S96N"], "vpu": ["M1R", "-2Q", "-3H", "-4R", "-5L"]}, "labels": {"aa": "INT: P29L; RT-p51: S162G, F214L, T215A, M230T, E399G, A437V; RT-p66: S162G, F214L, T215A, M230T, E399G, A437V, I452M, I466V, V467I, Q509K, I522V; gp120: V2A, M3T, G4E, N5K, D29Y, S104-, N108-, T110-, N113-, S114-, -160S, -161S, -162D, -328R, S347-, -372G, -373I, -374K, -381K, -382S, -383S, -384G, -385N, T432N, -433S, -434T, -436E, -437T, E438-, T439-; gp41: R196I, V197F, F206L, N212G, G220R, G221E, E224K, G227K, A267T, G278R, G314R, R317K, I322L, I324R, I325F, W326C, R327K, V334A, R335K, G339D, G342R; nef: G12R, R17K, G41K, C55R, E62K, E64D, G67S, G132R, T133I, -155E, G159-, H169Q, G172R; p17: I76V; p24: L6I, I129L, A194S; p6: S50L; pro: L23P, F53S, T63A; rev: K30R, A37T, R38*, R42K, W45*, S67P, C85H, G89S, G93R, G96Q, G104R; tat: V4L, D5E, P6T, H13Q, G15E, P60S, T77A, G83D, S84L, E86K; vif: I20T, K50R, G60E, A62T, K67T, G71S, S95R, N190H; vpr: E17A, H45Y, C76G, V84I, R87N, S96N; vpu: M1R, -2Q, -3H, -4R, -5L"}}}, {"name": "KC899081", "node_attrs": {"div": 0.14738, "accession": "KC899081", "clade_membership": {"value": "CRF60_BC"}, "country": {"value": "IT"}, "date": {"value": 2011.0}, "Strain_name": {"value": "BAV636"}, "LANL_subtype": {"value": "CRF60_BC"}}, "branch_attrs": {"mutations": {"nuc": ["-280G", "C281-", "A286G", "A311G", "A374G", "G428A", "G480A", "A745G", "T885C", "T988C", "T1001C", "A1022G", "A1025T", "G1101A", "T1484A", "A1487G", "C1492T", "T1493A", "A1496T", "G1498A", "C1556T", "A1614C", "A1804G", "A2223G", "T2542C", "G2704A", "T2803C", "A3080C", "G3477A", "G3724A", "G3737A", "A3886G", "A4142T", "T4236G", "A4273G", "G4274A", "A4307C", "G4351T", "G4366C", "A4370C", "A4372T", "A4375T", "A4378T", "C4381T", "T4405A", "T4426A", "A4438G", "G4447T", "T4450G", "T4510G", "C4537T", "T4540C", "A4555G", "A4558G", "G4560A", "G4561A", "A4570C", "T4579C", "G4597A", "A4684G", "T4694G", "G4719A", "G4723A", "A4792T", "G4932A", "A5090G", "A5124G", "A5284G", "A5432C", "T5436C", "A5544C", "T5554G", "A5557C", "G5599T", "-5602G", "C5611A", "-5612T", "G5613A", "-5614G", "T5616C", "-5620A", "A5677G", "C5713G", "A5714C", "T5735C", "-5793A", "A5804C", "T5890C", "A6113G", "G6182A", "A6185G", "C6190T", "A6191G", "A6326G", "A6335G", "G6508A", "T6559C", "G6641A", "C6766T", "G6806A", "A6820G", "T6892-", "A6947T", "T6949G", "A6950G", "-6952A", "-6953T", "-6954A", "-6955A", "-6956T", "-6957A", "-6958A", "-6959T", "-6961G", "-6962G", "-6963A", "C6966A", "-6968A", "-6969T", "-6970T", "-6972G", "-6973T", "-6976T", "-6977A", "-6978C", "-6981T", "-6982T", "-6983C", "-6986A", "-6987T", "T6988C", "-6989A", "-6993G", "-6994G", "-6995A", "-6996A", "-7009C", "-7149C", "-7150G", "-7152A", "A7154G", "-7155A", "-7159G", "-7160A", "-7161A", "C7170T", "T7204C", "A7246T", "T7250G", "A7268G", "G7630T", "G7640A", "T7747G", "A7772G", "A8018G", "G8019A", "T8121G", "C8165A", "T8190C", "A8255C", "A8267G", "A8269T", "A8329G", "G8365A", "T8374C", "C8400A", "G8479A", "T8534A", "C8655A", "A8739G", "C8740A", "A8746T", "G8827A", "G8864T", "T8923G", "G8936A", "A8977G", "T9075C"], "INT": ["S123C", "M154R", "D167N", "M178L", "R262K"], "RT-p51": ["K43R", "I329L"], "RT-p66": ["K43R", "I329L", "R461K", "V548I"], "gp120": ["S87G", "-105N", "-106V", "-107K", "-109N", "-111A", "-112A", "N113D", "S114A", "-115P", "-116S", "-117M", "-118Q", "E159T", "-160F", "-161G", "-162E", "A263T", "G318S", "-329K", "-434N", "N435D", "-436T", "-437N", "T439I", "K464N", "L466V", "K472E"], "gp41": ["E109D", "E113K", "D148E", "N157D", "S239D", "L273R", "L288I", "L296P", "I318L", "I322V"], "nef": ["S8N", "V11A", "L20M", "S46N", "Q105K", "T133D", "Y135F", "S162N", "E174D", "M194R"], "p17": ["G49S"], "p24": ["N5S", "V86A", "E98D", "V124I"], "p6": ["K42R"], "p7": ["F6L", "P9L", "K10N", "R11K", "T50P"], "rev": ["E10A", "Q14H", "E57G", "P106H"], "tat": ["K19T", "P60A", "S61R"], "vif": ["R4K", "K33R", "S36R", "E45K", "S46N", "Y69F", "A116T", "T180A"], "vpr": ["D7G", "I60M", "S94R"], "vpu": ["-6I", "V7D", "I24V", "Q36A", "V43A"]}, "labels": {"aa": "INT: S123C, M154R, D167N, M178L, R262K; RT-p51: K43R, I329L; RT-p66: K43R, I329L, R461K, V548I; gp120: S87G, -105N, -106V, -107K, -109N, -111A, -112A, N113D, S114A, -115P, -116S, -117M, -118Q, E159T, -160F, -161G, -162E, A263T, G318S, -329K, -434N, N435D, -436T, -437N, T439I, K464N, L466V, K472E; gp41: E109D, E113K, D148E, N157D, S239D, L273R, L288I, L296P, I318L, I322V; nef: S8N, V11A, L20M, S46N, Q105K, T133D, Y135F, S162N, E174D, M194R; p17: G49S; p24: N5S, V86A, E98D, V124I; p6: K42R; p7: F6L, P9L, K10N, R11K, T50P; rev: E10A, Q14H, E57G, P106H; tat: K19T, P60A, S61R; vif: R4K, K33R, S36R, E45K, S46N, Y69F, A116T, T180A; vpr: D7G, I60M, S94R; vpu: -6I, V7D, I24V, Q36A, V43A"}}}]}, {"name": "CRF60_BC_NODE_0000002", "node_attrs": {"div": 0.12724, "clade_membership": {"value": "CRF60_BC"}}, "branch_attrs": {"mutations": {}}, "children": [{"name": "MF109718", "node_attrs": {"div": 0.14941, "accession": "MF109718", "clade_membership": {"value": "CRF60_BC"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "15228_1_80.3"}, "LANL_subtype": {"value": "CRF60_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T422C", "T424A", "G498A", "A516C", "T525A", "G614T", "G682A", "A691C", "A692G", "C771G", "C950T", "A977G", "C1040T", "A1046T", "C1115A", "G1260T", "C1261G", "T1262C", "G1424A", "C1443G", "C1448T", "A1458-", "A1459-", "C1460-", "A1476G", "G1526A", "G1562A", "G1622A", "G1642A", "A1673G", "A1697G", "G1713T", "C1714T", "A1715G", "-1734G", "-1735A", "-1736G", "G1737-", "A1738-", "G1739-", "A1740-", "C1741-", "A1742-", "A1743-", "C1744-", "-1746A", "-1747C", "-1748G", "-1749A", "-1750C", "G1764A", "A1770G", "G1779-", "A1780-", "A1781-", "-1786A", "-1787A", "G1845A", "C2044T", "T2101A", 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"I39L"]}, "labels": {"aa": "INT: E11D, S24N, A265V; RT-p51: I135T, K211Q, R277K, A286T, M377I; RT-p66: I135T, K211Q, R277K, A286T, M377I, S468C, Q480H, R530K, S554N, I556V, K558R; gp120: E59K, -105S, -106N, -107S, -109N, N111L, E125-, M126-, K127-, K142Q, E144V, P155S, N159D, -161N, D251N, E262D, N292D, G293A, K307R, -308D, R316Q, S318G, K322A, N334A, E342G, T371-, L424I, N432P, -433E, N434D, E436K; gp41: A30T, R31K, R46K, M54L, N96A, D109A, R133K, I140L, K144N, N166K, I210T, D232E, N239S, A243P, K297R, I301S, R324I, R330L, N331H, A342V; nef: G3S, T45P, S50G, A53S, A54T, E59Q, E98D, K105Q, F139S, F143Y, N161S, E176D, K184V, M194L, L198K; p17: H28S, M30K, G49S, K91G, K124E; p2: -10S, -11T, -12N; p24: A14T, S120N, R203K, P207S; p6: P26S, E29D, P30L; p7: M1I, P9S, R26K, K41R; pro: V15I, G16E, K41R; rev: Q51E, S61T, L73F, V109I, K115T; tat: Y26F, K29R, S31C, L35P, V36A, Q39L, S61G, S75P; vif: K34R, K36A, H48N, K50R, L91M, R92K, I154V, R167K, H192R; vpr: I70T, I74F; vpu: L4-, G8-, A19V, I39L"}}}, {"name": "MN611466", "node_attrs": {"div": 0.13477, "accession": "MN611466", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2014.0}, "Strain_name": {"value": "ZA011EP4D1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C179T", "T182G", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "G196-", "G197-", "A198-", "C199-", "T200-", "T201-", "G202-", "A203-", "A204-", "A205-", "G206-", "C207-", "G208-", "A209-", "A210-", "A211-", "G212-", "T213-", "A214-", "A215-", "G216-", "-280G", "G286A", "T305-", "A378G", "A388G", "A398G", "C419T", "C435T", "C482T", "G562A", "T593C", "A604G", "G608C", "A617G", "C618A", "T666A", "G717A", "G818A", "C827T", "T884C", "C926A", "A938G", "T978G", "A989G", "A991C", "T1004G", "G1019A", "A1025C", "C1061T", "C1062T", "G1064A", "G1077A", "C1115A", "A1256G", "T1322C", "C1444-", "A1445-", "A1446-", "A1447C", "C1448A", "A1452C", 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"C8699A", "G8729A", "C8809A", "T8831C", "G8864A", "A8870G", "G8871C", "G8902T", "A8904C", "G8905A", "C8906A", "G8914A", "C8915T", "G8917A", "G8945A", "T8947A", "G8955A", "G8982A", "C9012T", "C9075-", "C9078T", "T9098C", "T9132C"], "INT": ["S17N", "A125Q", "S255G", "A278D", "D286N"], "RT-p51": ["Q174K", "I178L", "F214L", "T359S", "M377T", "V381I", "A437V"], "RT-p66": ["Q174K", "I178L", "F214L", "T359S", "M377T", "V381I", "A437V", "S468H"], "gp120": ["K18R", "E57D", "K69E", "-105K", "-106V", "-107K", "T110-", "-112T", "N113I", "-115Y", "-116S", "-117N", "-118T", "-119S", "-120I", "-121Y", "-122E", "T135K", "R138K", "D139G", "K143E", "L147F", "D157N", "N158K", "N159K", "-161Y", "S162N", "I166L", "N167S", "A172V", "N201K", "E240G", "R245S", "A253V", "E265R", "T269I", "N272G", "K307E", "-308G", "K309D", "N311I", "S318K", "K322G", "P326-", "N327-", "-328N", "K332E", "N334R", "S336H", "I343V", "T344K", "G361S", "T366S", "N367M", "-370S", "-372N", "-373N", "K418I", "N432I", "-433N", "N435G", 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"K122Q", "D134E", "K158E"], "vpr": ["P37T", "Y45H", "E48T", "I63M", "L64M", "Q86H"], "vpu": ["-2L", "-3S", "-5I", "-6D", "-7V", "-9V", "-10A", "V14I", "I18L", "V26A", "R37K", "W41C", "V79G"]}, "labels": {"aa": "INT: S17N, A125Q, S255G, A278D, D286N; RT-p51: Q174K, I178L, F214L, T359S, M377T, V381I, A437V; RT-p66: Q174K, I178L, F214L, T359S, M377T, V381I, A437V, S468H; gp120: K18R, E57D, K69E, -105K, -106V, -107K, T110-, -112T, N113I, -115Y, -116S, -117N, -118T, -119S, -120I, -121Y, -122E, T135K, R138K, D139G, K143E, L147F, D157N, N158K, N159K, -161Y, S162N, I166L, N167S, A172V, N201K, E240G, R245S, A253V, E265R, T269I, N272G, K307E, -308G, K309D, N311I, S318K, K322G, P326-, N327-, -328N, K332E, N334R, S336H, I343V, T344K, G361S, T366S, N367M, -370S, -372N, -373N, K418I, N432I, -433N, N435G, E436T, T437N, G443A, D446N, R448K; gp41: I72L, K77Q, I84M, D109K, E110D, N129D, T130I, L134M, A151E, S154K, N156S, N160S, D163S, K172R, I173L, M176I, L219P, D232N, R259H, A268V, R276Q, G293S, L296I, S302N, A312G, V321F, I322L, R324S, C326Y, A328G, I329V; nef: I10K, A15D, I20M, A49P, R71K, Y115H, A156D, D177H, S187I, S188Q, R191H, R192K, F202Y, D205N; p17: T15A, K18R, R76K, K90R, K91N, C111S, -125I, V128-; p2: -10Q, -11A, -12S; p24: L83V, H87P, M96I, E98D, A116T, D128E, T210S; p6: T8S, P30-, K31-, D32-, R33K, E34D, -35R, -36E; p7: S4G, P9A, I24V, T50N; pro: S12T, N37S, L63P, M89L; rev: I18T, K20R, R50K, I78L, S89G, Q95E, G104R, A108T, G111E, A114D; tat: L8I, E9D, K24N, T40K, S70P, S84P; vif: L8M, K36G, G37R, K67T, G101D, D117E, K122Q, D134E, K158E; vpr: P37T, Y45H, E48T, I63M, L64M, Q86H; vpu: -2L, -3S, -5I, -6D, -7V, -9V, -10A, V14I, I18L, V26A, R37K, W41C, V79G"}}}]}, {"name": "C_NODE_0000004", "node_attrs": {"div": 0.08556000000000001, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T1271G", "G1421T", "A1495G", "A2611G", "G2612A", "A2626C", "G2728A", "G4687A", "T5599G", "-5600T", "-5601A", "-5602G", "T5621C", "A5792C", "A5795C", "A5867-", "A5868-", "C5869-", "G5958A", "T6169-", "A6173-", "A6263G", "T6285A", "T6287A", "A6333C", "A6689G", "A6691G", "-6968T", "-7152G", "A7268G", "G7589A", "C7590A", "C8291T", "C9012T", "-9033G"], "RT-p51": ["A173T", "E177D"], "RT-p66": ["A173T"], "gp120": ["N5-", "R35K", "A133V", "I279V", "K312E", "-378N", "-380T", "-433S", "K472E"], "p24": ["D180E"], "p7": ["K10R"], "vif": ["D134E"], "vpu": ["-7V", "-9I", "V79A"]}, "labels": {"aa": "RT-p51: A173T, E177D; RT-p66: A173T; gp120: N5-, R35K, A133V, I279V, K312E, -378N, -380T, -433S, K472E; p24: D180E; p7: K10R; vif: D134E; vpu: -7V, -9I, V79A"}}, "children": [{"name": "C_NODE_0000005", "node_attrs": {"div": 0.09482000000000002, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A214G", "G286A", "T303A", "G413A", "A607G", "G1404A", "G1474A", "T1501C", "-1729T", "-1730C", "-1732A", "-1733G", "-1734G", "T1735A", "C1736G", "G1739-", "A1741-", "G1742-", "A1743-", "C1744-", "A1745-", "A1746-", "C1747-", "C1748-", "G1852A", "G2182A", 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"gp41": ["S107T", "K144R", "I193L", "F206L", "N239S", "A243T", "A268V", "V321F", "R324S"], "nef": ["V11I", "S50H", "F85I", "K182R"], "p24": ["T210S"], "p7": ["R3K"], "rev": ["S61D", "D84N", "S99N", "V109I"], "tat": ["K24G", "E63K", "I69L", "S70P"], "vif": ["K36G", "H127Q"], "vpr": ["Y45H"], "vpu": ["-2L", "-6A", "-10G", "S65A"]}, "labels": {"aa": "RT-p51: K166R, D250E; RT-p66: K166R, D250E, R461K; gp120: M3K, -109A, Y145N, D157N, A253V, V267E, R351G, -377S, P389Q, I468V; gp41: S107T, K144R, I193L, F206L, N239S, A243T, A268V, V321F, R324S; nef: V11I, S50H, F85I, K182R; p24: T210S; p7: R3K; rev: S61D, D84N, S99N, V109I; tat: K24G, E63K, I69L, S70P; vif: K36G, H127Q; vpr: Y45H; vpu: -2L, -6A, -10G, S65A"}}, "children": [{"name": "AY162224", "node_attrs": {"div": 0.13065000000000002, "accession": "AY162224", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 1998.0}, "Strain_name": {"value": "TV002"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": 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"T7192C", "T7228C", "A7231G", "G7246A", "A7269C", "G7270T", "G7309A", "G7366A", "G7369A", "C7429T", "A7522G", "A7532C", "G7552A", "A7553C", "C7596T", "G7628A", "A7629G", "A7669G", "A7722G", "T7765G", "A7791G", "G7885A", "T7912C", "G7918A", "A7996C", "G7997A", "A7998G", "T8047C", "G8050A", "G8053A", "A8069T", "C8103T", "G8130A", "A8142G", "C8156T", "A8161G", "C8189T", "G8208A", "C8221T", "A8258C", "G8274A", "A8276C", "C8286G", "T8291C", "A8297G", "T8323C", "C8386A", "T8387A", "A8402C", "A8413G", "C8415T", "G8436T", "T8456G", "T8507C", "G8537A", "G8588A", "C8597A", "C8666G", "C8684T", "A8746T", "G8767A", "T8779A", "C8789T", "T8905C", "T8947A", "C9039T", "C9047G", "T9115C", "T9179C"], "INT": ["I84M", "A124T", "G134D", "Q137R", "T206S"], "RT-p51": ["A36E", "D177E", "I178V", "E207G", "H334N", "K350R", "T369A", "A376T", "M377Q", "Q394P", "T403S", "A435V"], "RT-p66": ["A36E", "I178V", "E207G", "H334N", "K350R", "T369A", "A376T", "M377Q", "Q394P", "T403S", "A435V", "L469F", "A477T", "S491P", "N519S", "N527K", "R530K"], "gp120": ["W17G", "K18R", "M56V", "V57I", "E59G", "H77Q", "-112Y", "-115T", "-116S", "-117K", "-118D", "-119M", "E125-", "M126-", "N132Y", "L156I", "N159-", "N160-", "S162-", "I197P", "T204K", "T208I", "N212D", "D251N", "V264I", "E267K", "N272G", "T288A", "-308N", "K309E", "E312T", "K319Q", "K322Q", "H324L", "-328S", "K329T", "T330G", "N334A", "S336H", "S360T", "G361D", "-368S", "-370G", "-372C", "-373T", "-374T", "-375C", "-376M", "-379N", "-381E", "-382R", "K418R", "N432D", "S433N", "N435T", "E472A"], "gp41": ["K77Q", "I84L", "P98L", "D109S", "E110D", "N140S", "S154R", "D163S", "E215G", "R231S", "D232S", "S256C", "A267V", "R276H", "E280G", "A281T", "S302N", "I319L", "S324N", "I325L", "A328G", "I332V"], "nef": ["A15E", "E24R", "P25S", "A32S", "D38E", "Y120F", "Y135F", "C142Y", "V146E", "S188T", "F202Y"], "p17": ["T15K", "K26R", "L46V", "E55D", "K58R", "L75I", "E90K", "K91G", "E93D", "G123K", "K124-"], "p2": ["-10T", "-11S", "-12V", "I13-"], "p24": ["A177S"], "p6": ["A12L", "S14P", "F15-", "R16-", "F17-", "E20-", "E21-", "T23A", "A25P", "P26A"], "p7": ["M1I", "I12A", "K20R", "K34R"], "pro": ["G16A", "I19T", "K70R", "M89L"], "rev": ["V16I", "R17K", "K39R", "R50Q", "S67P", "A68T", "E69K", "Q74L", "S103F", "K105E", "A114V"], "tat": ["V4I", "K29R", "T40K", "S46Y", "S62N", "N67D"], "vif": ["N22H", "K34R", "G36D", "D78A", "G101D", "A103T", "D117E", "R132K", "E134D"], "vpr": ["S41N", "Q77H", "S94N"], "vpu": ["-3D", "-5T", "V7R", "A8I", "I43V", "D60E", "T61L", "E62S", "E63T", "A65V", "T66D", "-68G", "V69-", "D70-", "M71-", "G72-", "L82V"]}, "labels": {"aa": "INT: I84M, A124T, G134D, Q137R, T206S; RT-p51: A36E, D177E, I178V, E207G, H334N, K350R, T369A, A376T, M377Q, Q394P, T403S, A435V; RT-p66: A36E, I178V, E207G, H334N, K350R, T369A, A376T, M377Q, Q394P, T403S, A435V, L469F, A477T, S491P, N519S, N527K, R530K; gp120: W17G, K18R, M56V, V57I, E59G, H77Q, -112Y, -115T, -116S, -117K, -118D, -119M, E125-, M126-, N132Y, L156I, N159-, N160-, S162-, I197P, T204K, T208I, N212D, D251N, V264I, E267K, N272G, T288A, -308N, K309E, E312T, K319Q, K322Q, H324L, -328S, K329T, T330G, N334A, S336H, S360T, G361D, -368S, -370G, -372C, -373T, -374T, -375C, -376M, -379N, -381E, -382R, K418R, N432D, S433N, N435T, E472A; gp41: K77Q, I84L, P98L, D109S, E110D, N140S, S154R, D163S, E215G, R231S, D232S, S256C, A267V, R276H, E280G, A281T, S302N, I319L, S324N, I325L, A328G, I332V; nef: A15E, E24R, P25S, A32S, D38E, Y120F, Y135F, C142Y, V146E, S188T, F202Y; p17: T15K, K26R, L46V, E55D, K58R, L75I, E90K, K91G, E93D, G123K, K124-; p2: -10T, -11S, -12V, I13-; p24: A177S; p6: A12L, S14P, F15-, R16-, F17-, E20-, E21-, T23A, A25P, P26A; p7: M1I, I12A, K20R, K34R; pro: G16A, I19T, K70R, M89L; rev: V16I, R17K, K39R, R50Q, S67P, A68T, E69K, Q74L, S103F, K105E, A114V; tat: V4I, K29R, T40K, S46Y, S62N, N67D; vif: N22H, K34R, G36D, D78A, G101D, A103T, D117E, R132K, E134D; vpr: S41N, Q77H, S94N; vpu: -3D, -5T, V7R, A8I, I43V, D60E, T61L, E62S, E63T, A65V, T66D, -68G, V69-, D70-, M71-, G72-, L82V"}}}, {"name": "AY158533", "node_attrs": {"div": 0.13386, "accession": "AY158533", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 1998.0}, "Strain_name": {"value": "98ZA445"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["-281C", "T392A", "A416G", "C419T", "C426A", "C435T", "C482T", "A516C", "C525T", "A530T", "A533G", "T571A", "G615A", "C635A", "T666G", "G667T", "A677G", "A678G", "T734A", "C747A", "G771C", "A774T", "T782G", "G791A", "T824C", "A860G", "T936C", "A989G", "G1002A", "C1060A", "C1175T", "G1205A", "A1208G", "A1446G", "A1447G", "T1451C", "A1452T", "-1458A", "-1459A", "G1532A", "G1543A", "A1580C", "G1664A", "A1670G", "A1691G", "-1731G", "-1739C", "G1740A", "-1741C", "-1742C", "C1753T", "G1766A", "C1768A", "C1775A", "C1849A", "A1903C", "G1972A", "T1978G", "A2002G", "G2134A", "G2155A", "T2206C", "G2221A", "C2353T", "G2413A", "A2419G", "A2462G", "G2463A", "A2560G", "C2615A", "A2616G", "A2618C", "C2620T", "C2635T", "A2641G", "C2671T", "T2689C", "G2704A", "A2713G", "C2720T", "T2735C", "C2749T", "A2809G", "G2821A", "A2829T", "G2869A", "A2881G", "A2896T", "C2909G", "T2935C", "C2975T", "G3016A", "C3023T", "A3058C", "G3091A", "T3097G", "T3112C", "T3172G", "C3175A", "C3223T", "T3225C", "G3226A", "A3249G", "C3294T", "C3376T", "G3379A", "G3439A", "A3451G", "C3475T", "A3478G", "A3529G", "C3545T", "A3547G", "G3553A", "G3595A", "A3607G", "T3613C", "T3652C", "A3664G", "A3673T", "G3686A", "C3688A", "T3712C", "G3756A", "T3757A", "T3793G", "A3816G", "G3846A", "T3904C", "G3916A", "T4074A", "T4132C", "T4192C", "A4195G", "T4282A", "A4420G", "A4525T", "A4526T", "A4528G", "C4569T", "C4585T", "A4636G", "T4640C", "A4693G", "A4709G", "G4737A", "G4749A", "T4772G", "A4786C", "A4806C", "C4833A", "C4871T", "A4874C", "C4883T", "C4965G", "C4988A", "G5036A", "A5059G", "G5123A", "A5155G", "C5160T", "C5162T", "G5188A", "T5275C", "C5280T", "A5281G", "T5286C", "G5296A", "A5305G", "A5312G", "C5333T", "T5355G", "G5363A", "C5461A", "C5463A", "C5466T", "C5479G", "A5492T", "T5515A", "T5617C", "-5620T", "C5621A", "-5626G", "T5633C", "G5647A", "A5652G", "G5662A", "T5695A", "A5696T", "T5704A", "G5706A", "G5707A", "T5708A", "A5716G", "G5717A", "T5728A", "A5738G", "G5781A", "T5789C", "C5792A", "C5795A", "C5797T", "-5799G", "-5800G", "-5801C", "-5802C", "-5803A", "-5804C", "-5805A", "-5806A", "-5807T", "T5850A", "G5853A", "G5865T", "G5956A", "C6010T", "A6020T", "C6097T", "C6110G", "A6118C", "G6136A", "C6165G", "T6166C", "T6184C", "T6187C", "C6190T", "A6195G", "T6196C", "-6198T", "T6199A", "-6221A", "-6222A", "-6223G", "-6225A", "-6226A", "G6251A", "A6268T", "A6288G", "T6289A", "C6293A", "T6295C", "A6302G", "A6326G", "T6328G", "A6338G", "-6340G", "T6351G", "A6353C", "T6361C", "G6368A", "C6469T", "A6470G", "T6472G", "C6477A", "C6487T", "A6535T", "G6566T", "A6576G", "A6616G", "T6631G", "C6632T", "T6634C", "G6638A", "G6689A", "C6721T", "A6723T", "G6743A", "A6776G", "C6778A", "G6779A", "A6781T", "A6788G", "A6791G", "A6799C", "G6801T", "G6818A", "A6841G", "A6849C", "A6856C", "C6857T", "C6875T", "A6881G", "A6936G", "A6947G", "-6955G", "-6956T", "-6957A", "T6958C", "T6968G", "C6970A", "-6972G", "-6974T", "-6975C", "-6977T", "-6978C", "-6979A", "-6981A", "-6982A", "-6985A", "-6987C", "-6988A", "-6991G", "-6992T", "-7008C", "-7009C", "A7032G", "A7040G", "A7060G", "A7154T", "A7155C", "T7156A", "T7159G", "-7162G", "C7164T", "A7169G", "C7170T", "A7241G", "G7291A", "A7292G", "A7297G", "A7375G", "A7399G", "T7444C", "T7462C", "T7516C", "C7625A", "T7633G", "C7792T", "T7801G", "T7879G", "G7947A", "G7964A", "C8005A", "C8145T", "G8170A", "T8205C", "A8219G", "A8222C", "C8290T", "A8308G", "G8327A", "T8332C", "A8337T", "A8363G", "C8382T", "G8385A", "A8402G", "A8405G", "G8414T", "A8459C", "A8461G", "A8468G", "C8476T", "G8479A", "C8503A", "G8528A", "C8590G", "A8656G", "C8666T", "G8678A", "T8701A", "G8774A", "G8780A", "G8794A", "A8822G", "G8861A", "A8869G", "T8883C", "C8990T", "C9006T"], "INT": ["D6E", "K14R", "S24N", "M50I", "F100Y", "I251L", "A265V"], "RT-p51": ["S123D", "Q174R", "N175H", "F214L", "Q245L", "P272A", "P294S", "H334Q", "M377T", "K385R", "T400I"], "RT-p66": ["S123D", "Q174R", "N175H", "E177D", "F214L", "Q245L", "P272A", "P294S", "H334Q", "M377T", "K385R", "T400I", "I452M", "V466I", "V531I", "S554K"], "gp120": ["G4V", "M56L", "E59D", "Q86E", "T104S", "N111V", "-112N", "N114S", "-115I", "-123K", "-124E", "V133I", "L137V", "R138S", "N145R", "L147I", "R150G", "N158E", "N160R", "-161D", "I166R", "N167H", "A172T", "N206E", "T208K", "A238S", "E241G", "H259Q", "L260F", "E262K", "V279M", "Y290F", "D297N", "-308E", "K309N", "T313A", "Q315H", "R316M", "K319E", "K332T", "P335S", "I343V", "S365G", "-370S", "-372G", "-373S", "-374S", "-375S", "-376K", "N378T", "-379K", "T380S", "-385T", "K393R", "I396V", "N434S", "N435K", "T437I", "T439V", "I463V", "R480G"], "gp41": ["I24M", "I84M", "Q108K", "D163N", "N166K", "G221R", "A281I", "I301T", "T306A", "I307L", "R330C", "A342T", "Q345L"], "nef": ["P14S", "A15T", "I20M", "E24N", "K39N", "H40R", "T45I", "S46N", "A54D", "A83G", "K105R", "E108D", "R151K", "M173I", "E176G", "S188M"], "p17": ["L31I", "I61L", "Q65H", "F79Y", "K91R", "V94I", "C111V", "T115A"], "p2": ["N8G", "-10S", "-11N"], "p24": ["L6I", "A14P", "I15L", "V91I", "T110N"], "p6": ["-18E", "-19E", "E20D", "E21T", "T22P", "T23V", "A25K", "P26Q", "K27E", "E29-", "P30-", "K31-", "D32-", "R33K", "-35R", "-36E"], "p7": ["I12T", "R26K", "K38N"], "pro": ["E35D", "D60E"], "rev": ["H53N", "A108T"], "tat": ["L35V", "Q39L", "Y47N", "D80N"], "vif": ["K17R", "V51I", "V55I", "K67T", "T74P", "H83N", "Q127E", "K158R", "N190S", "H192Y"], "vpr": ["D7N", "T19I", "A59V", "I61T", "I70V", "L84V"], "vpu": ["-3N", "-5Y", "A8G", "I9A", "V14I", "A19T", "Y30I", "L33I", "V34K", "R37E", "W41R", "K44R", "D81E"]}, "labels": {"aa": "INT: D6E, K14R, S24N, M50I, F100Y, I251L, A265V; RT-p51: S123D, Q174R, N175H, F214L, Q245L, P272A, P294S, H334Q, M377T, K385R, T400I; RT-p66: S123D, Q174R, N175H, E177D, F214L, Q245L, P272A, P294S, H334Q, M377T, K385R, T400I, I452M, V466I, V531I, S554K; gp120: G4V, M56L, E59D, Q86E, T104S, N111V, -112N, N114S, -115I, -123K, -124E, V133I, L137V, R138S, N145R, L147I, R150G, N158E, N160R, -161D, I166R, N167H, A172T, N206E, T208K, A238S, E241G, H259Q, L260F, E262K, V279M, Y290F, D297N, -308E, K309N, T313A, Q315H, R316M, K319E, K332T, P335S, I343V, S365G, -370S, -372G, -373S, -374S, -375S, -376K, N378T, -379K, T380S, -385T, K393R, I396V, N434S, N435K, T437I, T439V, I463V, R480G; gp41: I24M, I84M, Q108K, D163N, N166K, G221R, A281I, I301T, T306A, I307L, R330C, A342T, Q345L; nef: P14S, A15T, I20M, E24N, K39N, H40R, T45I, S46N, A54D, A83G, K105R, E108D, R151K, M173I, E176G, S188M; p17: L31I, I61L, Q65H, F79Y, K91R, V94I, C111V, T115A; p2: N8G, -10S, -11N; p24: L6I, A14P, I15L, V91I, T110N; p6: -18E, -19E, E20D, E21T, T22P, T23V, A25K, P26Q, K27E, E29-, P30-, K31-, D32-, R33K, -35R, -36E; p7: I12T, R26K, K38N; pro: E35D, D60E; rev: H53N, A108T; tat: L35V, Q39L, Y47N, D80N; vif: K17R, V51I, V55I, K67T, T74P, H83N, Q127E, K158R, N190S, H192Y; vpr: D7N, T19I, A59V, I61T, I70V, L84V; vpu: -3N, -5Y, A8G, I9A, V14I, A19T, Y30I, L33I, V34K, R37E, W41R, K44R, D81E"}}}]}, {"name": "C_NODE_0000006", "node_attrs": {"div": 0.08774000000000001, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T424G", "T782A", "T2071C", "T5611A", "C5827-", "T5828-", "T5829-", "A6189T", "-7008C", "-7009C", "T7604A", "C7605A", "T7932C", "C8406A"], "gp120": ["Y367-", "-379A"], "gp41": ["I210T"], "p17": ["H28Q", "M30R"], "tat": ["S75P"], "vpu": ["-10V"]}, "labels": {"aa": "gp120: Y367-, -379A; gp41: I210T; p17: H28Q, M30R; tat: S75P; vpu: -10V"}}, "children": [{"name": "C_NODE_0000007", "node_attrs": {"div": 0.09243000000000001, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T156G", "T303A", "A378G", "G1002A", "G1205A", "T1244C", "G1260T", "G1568A", "A1619G", "G1972A", "G2518A", "C2615A", "A3478G", 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"T9132C", "C9133T"], "INT": ["S17C", "E25D", "A124T", "D167E", "I234V", "K269R", "A278D"], "RT-p51": ["E138S", "F214L", "E248D", "K275R", "R277K", "Q278H", "I329V", "A371V", "E396D"], "RT-p66": ["E138S", "F214L", "E248D", "K275R", "R277K", "Q278H", "I329V", "A371V", "E396D", "I452L", "R461K", "V466I", "T470N", "N519T", "N527K"], "gp120": ["N1S", "V2-", "M3-", "G4-", "L6-", "T22A", "E34D", "K35R", "M56V", "V57N", "K69R", "N102D", "-109V", "N111G", "-112I", "N113S", "-115S", "-116S", "-117V", "-118S", "-119M", "-120E", "-121E", "-122E", "-123M", "-124R", "E125-", "M126-", "K127-", "K141N", "K143Q", "P155Q", "D157N", "N159D", "T174A", "S181N", "T208S", "I243V", "T255I", "E262K", "S263N", "E265S", "N272G", "K307G", "-308G", "K309A", "E312D", "Q315Y", "K322A", "T330I", "P335S", "L341P", "R351G", "T366Y", "-367W", "-368F", "-370E", "-372Y", "-373R", "-374S", "-375N", "-376S", "-377T", "N432V", "N434D", "T439I", "K474R"], "gp41": ["S101N", "Q108L", "E110Y", "D113G", "T128S", "D153G", "N156D", "N157S", "D163G", "K172R", "E215G", "G220R", "N239S", "V271A", "R277G", "Y284F", "I307T", "V321I", "I322A", "R330C", "I332V", "R334T", "F340L"], "nef": ["I20M", "T23A", "S50A", "L100I", "E108D", "F143Y", "R151K", "C163S", "Q170L", "E176A", "R178G", "K182R", "R191H", "F202Y"], "p17": ["S54A", "K62Q", "L64I", "E90K", "K91R", "V94I", "I104V", "T115I"], "p2": ["A7T", "-10V", "I13-"], "p24": ["T210S"], "p6": ["A25V", "S40A"], "pro": ["K20R", "E35D", "D60E", "V82I"], "rev": ["R38Q", "K39R", "T91A", "Q95R", "V109I", "A114T"], "tat": ["V4I", "K29H", "I69V"], "vif": ["L8M", "K50R", "V51A", "R63S", "H127Q", "I159R", "K176E"], "vpr": ["Q3R", "P37Y", "I60L", "I63T", "R85Q", "A89V", "A93T", "S94N"], "vpu": ["L4I", "-5N", "-6L", "V7A", "I9R", "L12F", "T24I", "I43V", "E58D", "D60E", "T61L", "E62S", "E63T", "L64M", "S65V", "T66D", "-68G", "V69N", "D70L", "M71R", "G72L", "H73L", "L74-", "R75-", "L76-", "L77-", "D78-", "A79-", "N80D", "L82I"]}, "labels": {"aa": "INT: S17C, E25D, A124T, D167E, I234V, K269R, A278D; RT-p51: E138S, F214L, E248D, K275R, R277K, Q278H, I329V, A371V, E396D; RT-p66: E138S, F214L, E248D, K275R, R277K, Q278H, I329V, A371V, E396D, I452L, R461K, V466I, T470N, N519T, N527K; gp120: N1S, V2-, M3-, G4-, L6-, T22A, E34D, K35R, M56V, V57N, K69R, N102D, -109V, N111G, -112I, N113S, -115S, -116S, -117V, -118S, -119M, -120E, -121E, -122E, -123M, -124R, E125-, M126-, K127-, K141N, K143Q, P155Q, D157N, N159D, T174A, S181N, T208S, I243V, T255I, E262K, S263N, E265S, N272G, K307G, -308G, K309A, E312D, Q315Y, K322A, T330I, P335S, L341P, R351G, T366Y, -367W, -368F, -370E, -372Y, -373R, -374S, -375N, -376S, -377T, N432V, N434D, T439I, K474R; gp41: S101N, Q108L, E110Y, D113G, T128S, D153G, N156D, N157S, D163G, K172R, E215G, G220R, N239S, V271A, R277G, Y284F, I307T, V321I, I322A, R330C, I332V, R334T, F340L; nef: I20M, T23A, S50A, L100I, E108D, F143Y, R151K, C163S, Q170L, E176A, R178G, K182R, R191H, F202Y; p17: S54A, K62Q, L64I, E90K, K91R, V94I, I104V, T115I; p2: A7T, -10V, I13-; p24: T210S; p6: A25V, S40A; pro: K20R, E35D, D60E, V82I; rev: R38Q, K39R, T91A, Q95R, V109I, A114T; tat: V4I, K29H, I69V; vif: L8M, K50R, V51A, R63S, H127Q, I159R, K176E; vpr: Q3R, P37Y, I60L, I63T, R85Q, A89V, A93T, S94N; vpu: L4I, -5N, -6L, V7A, I9R, L12F, T24I, I43V, E58D, D60E, T61L, E62S, E63T, L64M, S65V, T66D, -68G, V69N, D70L, M71R, G72L, H73L, L74-, R75-, L76-, L77-, D78-, A79-, N80D, L82I"}}}]}, {"name": "C_NODE_0000008", "node_attrs": {"div": 0.0932, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A653G", "A752G", "A774C", "G977A", "C1768A", "C1795T", "G2182A", "A2473G", "A2727G", "A2919G", "G2980A", "C3100T", "A3151G", "G3226A", "G3686A", "A4581G", "C4585T", "A4636G", "T4640C", "T4694G", "C4988A", "C5019T", "C5168A", "T5171C", "T5228A", "G5336A", "C5461A", "A5607G", "G5643A", "-5799G", "-5800G", "-5806A", "-5807T", "G5832T", "G5853A", "T5929C", "C6160T", "-6167A", "-6170G", "-6171T", "-6173A", "-6174A", "A6195G", "-6222A", "-6223T", "G6303A", "A6330G", "G6779A", "G6818A", "T6860G", "-6952A", "-6972T", "-6985A", "-6987A", "-6989A", "-6990A", "-6991C", "C7020A", "T7114C", "T7150C", "G7492A", "G7552A", "T7622A", "G7701A", "G8254A", "G8388A", "G8441A", "A8636T", "T8831C", "G8846A", "T8903C", "C8907T", "A8922C", "-8997G", "T9029C", "A9095G"], "INT": ["M50I", "K269R"], "RT-p51": ["K211R", "K275R"], "RT-p66": ["K211R", "K275R", "V531I"], "gp120": ["R150K", "N334K", "S336A", "P389Q"], "gp41": ["R133K"], "nef": ["V16I", "E98D", "Y120F", "M168I", "M194L"], "p17": ["T15K"], "p24": ["I15L", "S225G"], "p6": ["P30Q", "T39I"], "pro": ["D60E"], "rev": ["K39R"], "vif": ["K17R"], "vpr": ["L22I", "L42I"]}, "labels": {"aa": "INT: M50I, K269R; RT-p51: K211R, K275R; RT-p66: K211R, K275R, V531I; gp120: R150K, N334K, S336A, P389Q; gp41: R133K; nef: V16I, E98D, Y120F, M168I, M194L; p17: T15K; p24: I15L, S225G; p6: P30Q, T39I; pro: D60E; rev: K39R; vif: K17R; vpr: L22I, L42I"}}, "children": [{"name": "KR820342", "node_attrs": {"div": 0.14219, "accession": "KR820342", "clade_membership": {"value": "C"}, "country": {"value": "ZM"}, "date": {"value": 2009.0}, "Strain_name": {"value": "Z3618F_11Jul09_PL_NFLG_SGA11"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C152A", "T157G", "G159T", "T160-", "T200C", "T201C", "-280G", "G286A", "A302T", "G365C", "C379A", "G394A", "C417A", "A418G", "G424A", "G425A", "C426T", "C435T", "G480A", "A491G", "T495A", "C496A", "A500C", "A508G", "A519C", "C540A", "T560A", "A601T", "A604C", "A606G", "C641T", "A686G", "G690A", "T695G", "A697C", "C698T", "A699G", "A701C", "T734A", "C772T", "T788C", "C827T", "T858C", "C879A", "A880C", "G1002A", "G1109A", "G1139A", "T1335C", "G1339A", "A1349G", "T1359A", "T1421G", "C1453T", "-1455A", "-1456A", "-1457T", "C1460-", "A1461G", "G1474A", "T1646C", "A1700T", "C1753T", "G1766A", "G1778A", "T1864C", "A1903C", "A1907G", "A1932G", "C1960T", "T1978A", "A2056C", "C2083T", "A2140G", "A2154G", "G2173A", "A2203C", "G2293A", "C2335T", "T2369C", "A2419G", "G2463A", "C2464T", "C2467T", "T2499C", "A2508C", "T2542C", "A2579T", "T2581G", "C2620T", "C2626A", "G2630A", "T2632C", "T2638C", "A2677G", "G2707A", "G2725A", "A2764G", "A2773G", "A2839C", "G2842A", "A2883G", "A2884G", "A2918C", "A2923G", "C2927A", "A2929C", "A2937G", "A2950G", "C3013T", "A3061G", "A3088G", "G3094A", "T3112C", "G3173A", "T3181A", "G3196A", "G3205A", "T3253C", "C3274T", "A3277G", "G3292A", "G3340A", "T3349C", "A3449C", "T3450A", "C3500T", "G3556A", "A3619T", "T3628C", "T3652C", "G3667A", "C3676T", "G3685A", "C3742T", "A3769G", "G3772A", "G3775A", "G3808T", "G3846A", "A3866G", "A3876G", "G3907A", "C3908T", "G3952A", "A3955T", "T3970C", "A4057G", "A4069T", "A4108G", "T4153C", "T4165C", "A4183G", "C4204T", "A4246G", "T4247C", "A4270G", "A4519G", "T4537C", "T4633G", "A4661G", "G4677A", "T4691C", "C4728A", "A4735G", "G4737A", "G4799T", "A4811G", "T4827C", "A4850G", "G4861A", "C4937A", "A4950C", "C4976A", "C5034T", "T5062G", "T5102C", "A5112G", "G5128A", "A5159G", "A5173G", "C5182T", "A5248G", "T5275C", "A5282C", "A5284G", "T5293C", "C5294T", "T5314C", "C5333T", "G5386A", "C5397A", "A5453T", "T5454C", "A5462G", "A5467T", "T5490C", "A5537G", "G5538A", "G5546A", "C5547G", "G5548A", "G5565A", "C5579T", "G5599T", "T5600C", "A5601T", "A5603T", "T5604A", "G5605A", "A5608G", "A5611G", "T5612A", "A5613T", "A5614T", "A5615T", "T5617C", "-5620G", "G5624A", "-5626G", "C5653T", "A5685G", "G5700A", "G5711A", "A5712G", "A5734G", "T5736G", "A5739G", "A5742G", "T5789C", "A5790T", "C5792A", "A5793G", "C5795A", "A5797T", "-5801C", "-5802A", "-5803A", "-5804C", "-5805A", "T5826-", "A5830-", "G5831-", "T5836A", "T5837G", "G5839C", "A5840T", "G5842T", "T5844G", "A5845G", "T5851A", "T5859G", "-5867A", "-5868A", "-5869C", "T5870A", "C5924T", "A5959G", "C5974T", "T5980C", "A6020T", "G6022A", "T6024C", "G6029A", "A6032G", "T6034G", "A6043G", "A6118T", "A6158G", "T6163C", "-6169G", "-6172T", "-6175T", "G6179C", "-6180A", "T6181G", "-6186T", "-6198G", "-6218G", "-6219A", "-6220G", "-6221T", "-6225A", "-6226A", "G6251A", "A6253G", "G6263T", "A6275C", "A6278G", "G6280A", "A6285T", "A6287C", "C6317A", "C6318A", "A6319T", "A6324G", "T6325A", "T6331C", "C6333G", "T6334C", "G6336A", "T6337C", "A6339G", "-6340C", "A6413C", "A6475T", "C6496T", "C6545T", "A6573G", "G6577T", "C6612T", "G6653A", "T6654A", "G6655T", "C6667T", "A6686-", "G6687-", "T6688-", "G6689-", "T6690-", "G6691-", "A6692G", "G6694T", "-6697A", "-6698G", "-6699G", "-6700G", "-6701A", "-6702T", "C6766T", "A6773G", "A6776T", "A6788G", "G6803A", "G6809A", "A6823G", "-6830C", "-6831C", "-6832C", "C6833A", "C6834A", "A6836-", "A6837-", "T6838-", "A6848G", "T6883C", "T6916C", "C6919T", "C6938T", "T6949G", "-6953T", "-6954T", "-6955T", "-6956A", "-6957A", "A6959G", "A6960G", "G6963C", "T6964A", "C6966A", "-6967T", "C6970G", "-6973T", "-6981G", "-6982T", "-6983T", "C6984A", "-6986T", "-6988A", "-6992A", "-6993T", "-6994C", "-6995A", "-6996A", "-6997A", "-6998G", "-6999G", "-7000C", "-7001A", "C7008A", "A7027G", "C7079T", "A7095G", "A7100G", "C7101T", "A7108T", "T7130C", "G7132A", "A7144G", "A7151G", "-7153C", "T7156G", "-7162T", "G7199A", "G7234A", "G7246A", "A7252G", "G7270C", "G7309A", "T7325C", "T7403C", "A7420G", "G7428A", "T7432C", "G7441A", "A7517C", "A7532C", "A7553C", "A7590G", "A7605T", "G7608C", "T7609G", "T7624A", "C7625A", "G7628C", "T7630A", "T7633C", "A7688G", "C7699T", "A7734G", "C7771A", "A7782G", "A7796T", "T7801C", "T7852C", "T7913C", "A7938C", "C7941A", "G7947A", "G7995A", "A7996C", "G7997A", "A8014G", "G8019A", "A8029G", "G8030C", "G8036A", "C8037T", "G8050A", "A8069T", "T8115C", "T8122C", "C8189T", "T8203C", "G8216A", "T8223C", "C8232T", "A8284G", "T8291A", "G8292T", "A8294C", "C8320T", "T8321G", "C8328T", "A8337T", "A8370G", "C8382T", "A8390T", "A8399G", "A8402G", "G8414A", "C8483T", "G8490C", "G8491A", "C8514T", "A8519G", "A8522G", "A8534G", "T8563C", "T8672G", "A8688C", "T8708A", "T8711C", "G8729A", "G8739A", "T8740C", "C8751T", "A8793C", "G8794A", "G8805A", "A8806G", "C8835T", "C8840T", "G8861A", "C8873A", "A8892C", "G8905T", "C8906G", "C8930T", "G8933A", "T8935A", "T8947G", "T8948G", "T8993C", "G8994T", "C9028A"], "INT": ["E11D", "S24N", "I31V", "K34R", "D286E"], "RT-p51": ["K20R", "S123N", "I135T", "E138A", "S162W", "D177E", "V179I", "E248D", "K263R", "Q278N", "K281R", "A360T", "M377I"], "RT-p66": ["K20R", "S123N", "I135T", "E138A", "S162W", "V179I", "E248D", "K263R", "Q278N", "K281R", "A360T", "M377I", "I452Q", "V466I"], "gp120": ["V2G", "-5N", "L6M", "M56L", "V57A", "E59K", "N60E", "N102D", "-105K", "-106V", "-107N", "N108V", "-109S", "T110A", "-112Q", "N114S", "-115S", "-122E", "-123Y", "-124E", "V133M", "K141Q", "K142E", "E144V", "Y145H", "P155N", "D157G", "N159S", "N160S", "-161N", "I187L", "E240G", "E241D", "A253V", "V267N", "S278G", "V279I", "R280G", "D294A", "K307E", "-308Y", "V317I", "K332E", "G361N", "S365R", "-367F", "-368N", "N369G", "-370T", "T371N", "-372W", "-373I", "P409S", "N414S", "T416V", "K418N", "N434G", "E436D", "D449N", "E472D"], "gp41": ["F8L", "S42N", "I72L", "K77Q", "I84L", "N96S", "S101I", "S102T", "S107T", "Q108K", "D109Q", "E110D", "N129D", "K144R", "N156K", "N160S", "T165S", "N212T", "P213Q", "R231N", "D232N", "A243P", "A245I", "S256C", "V271A", "D305N", "I307T", "A310V", "V321L", "I322V", "R330I", "N331H", "F340V", "A342V", "Q345L"], "nef": ["I10V", "P14S", "I20M", "S50H", "V74A", "E108D", "N116H", "V133T", "R151Q", "E155R", "M173I", "D177E", "K184Q", "S188M", "L198Q", "F202W"], "p17": ["R20K", "Q28S", "R30K", "G49S", "S54K", "E55D", "K58R", "K62Q", "Q69K", "H89L", "E90A", "K91E", "A119K", "D121A", "K122D"], "p2": ["-10I", "-11N", "-12V", "I13-"], "p24": ["A14V", "Q50T", "V91I", "R203K"], "p6": ["A25V"], "p7": ["R3K"], "pro": ["E35D", "N37D", "K45R"], "rev": ["S8D", "A11R", "R17K", "K30N", "R50Q", "S56G", "S61A", "C63Y", "A68T", "Q74L", "S92P", "A114V"], "tat": ["V4I", "N7K", "Y26F", "K29S", "S31C", "Q54R", "S57K", "A58T", "P68L", "T77P", "D80N"], "vif": ["M16R", "V31I", "H48N", "K50R", "V51I", "R92K", "D117E", "K122Q", "S130R", "I159R", "K176E", "R181K"], "vpr": ["Q3R", "T19A", "I60L", "S94N"], "vpu": ["R35K", "I43V", "S65A", "A79-", "N80-", "L82I"]}, "labels": {"aa": "INT: E11D, S24N, I31V, K34R, D286E; RT-p51: K20R, S123N, I135T, E138A, S162W, D177E, V179I, E248D, K263R, Q278N, K281R, A360T, M377I; RT-p66: K20R, S123N, I135T, E138A, S162W, V179I, E248D, K263R, Q278N, K281R, A360T, M377I, I452Q, V466I; gp120: V2G, -5N, L6M, M56L, V57A, E59K, N60E, N102D, -105K, -106V, -107N, N108V, -109S, T110A, -112Q, N114S, -115S, -122E, -123Y, -124E, V133M, K141Q, K142E, E144V, Y145H, P155N, D157G, N159S, N160S, -161N, I187L, E240G, E241D, A253V, V267N, S278G, V279I, R280G, D294A, K307E, -308Y, V317I, K332E, G361N, S365R, -367F, -368N, N369G, -370T, T371N, -372W, -373I, P409S, N414S, T416V, K418N, N434G, E436D, D449N, E472D; gp41: F8L, S42N, I72L, K77Q, I84L, N96S, S101I, S102T, S107T, Q108K, D109Q, E110D, N129D, K144R, N156K, N160S, T165S, N212T, P213Q, R231N, D232N, A243P, A245I, S256C, V271A, D305N, I307T, A310V, V321L, I322V, R330I, N331H, F340V, A342V, Q345L; nef: I10V, P14S, I20M, S50H, V74A, E108D, N116H, V133T, R151Q, E155R, M173I, D177E, K184Q, S188M, L198Q, F202W; p17: R20K, Q28S, R30K, G49S, S54K, E55D, K58R, K62Q, Q69K, H89L, E90A, K91E, A119K, D121A, K122D; p2: -10I, -11N, -12V, I13-; p24: A14V, Q50T, V91I, R203K; p6: A25V; p7: R3K; pro: E35D, N37D, K45R; rev: S8D, A11R, R17K, K30N, R50Q, S56G, S61A, C63Y, A68T, Q74L, S92P, A114V; tat: V4I, N7K, Y26F, K29S, S31C, Q54R, S57K, A58T, P68L, T77P, D80N; vif: M16R, V31I, H48N, K50R, V51I, R92K, D117E, K122Q, S130R, I159R, K176E, R181K; vpr: Q3R, T19A, I60L, S94N; vpu: R35K, I43V, S65A, A79-, N80-, L82I"}}}, {"name": "MT194138", "node_attrs": {"div": 0.14327, "accession": "MT194138", "clade_membership": {"value": "C"}, "country": {"value": "ZM"}, "date": {"value": 2011.0}, "Strain_name": {"value": "ZM1044M_16Aug2011_1A_23_N"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C152T", "T155G", "G224A", "T263A", "-281C", "A354G", "A356G", "A362G", "G367A", "A369C", "T377A", "C379G", "A399C", "C419A", "A516C", "A518G", "A519G", "A521C", "C525A", "A530T", "C537A", "G554A", "C575T", "A638G", "G651A", "G654A", "A655G", "A656G", "T666A", "A674G", "G683A", "-705A", "-706A", "-707T", "-708A", "-709C", "-710C", "-711A", "-712G", "-713T", "A714-", "A715-", "G716-", "G717-", "T718-", "C719-", "A720-", "G721-", "T722-", "G740A", "G771C", "A776G", "G821A", "C823G", "G829A", "C876T", "A881G", "A1089G", "T1091C", "T1103C", "C1137T", "T1143C", "C1175T", "A1192G", "C1229T", "G1271A", "G1301A", "C1304T", "C1330A", "A1367G", "A1418G", "T1421A", "A1433C", "C1439T", "C1444T", "A1450G", "-1458A", "-1459A", "A1464C", "T1484C", "C1492A", "A1500G", "T1501C", "T1505G", "C1541T", "G1552A", "G1568A", "C1610T", "A1691G", "G1697A", "C1706A", "T1722C", "C1749T", "C1751T", "A1781G", "T1797G", "G1819A", "T1832A", "G1852A", "G1861A", "T1868C", "G1972A", "T1978G", "C1979G", "A1981C", "C1985A", "T1986C", "A2018G", "A2029G", "A2059G", "C2071A", "G2221A", "A2371G", "T2449G", "A2455G", "A2462G", "T2542A", "C2589T", "C2605A", "C2615A", "T2644C", "T2654C", "G2682A", "G2683T", "A2699G", "C2720T", "T2737C", "C2806T", "G2925A", "A2929T", "G2947A", "A2992T", "G3016A", "A3070G", "T3118C", "C3121T", "G3154A", "A3224C", "A3283C", "G3324A", "G3325C", "G3379A", "A3395C", "A3397G", "C3399A", "C3405T", "A3421G", "A3449G", "A3491G", "G3494A", "T3497A", "A3535G", "T3541C", "A3565G", "C3567T", "A3571G", "A3583G", "A3601C", "G3643A", "A3646G", "G3684A", "C3763T", "T3778C", "A3817G", "G3825A", "A3901G", "C3940T", "T3943C", "T3946C", "A3989G", "G4036A", "A4066C", "A4076C", "C4079T", "G4092C", "G4103A", "C4210T", "A4225G", "A4267G", "T4276G", "C4381T", "A4420G", "T4674C", "G4677C", "T4678G", "T4679G", "A4683G", "A4688G", "A4692C", "T4702A", "A4717T", "G4723C", "C4757T", "T4769A", "A4817G", "T4820G", "G4829A", "T4857C", "A4901G", "T4967C", "G4975C", "C4976T", "C5006T", "T5018A", "G5045A", "A5058C", "A5090G", "G5131A", "C5149T", "A5150C", "T5152G", "G5188A", "C5221T", "A5248C", "G5269A", "T5293A", "C5342T", "T5439C", "T5442C", "A5444C", "A5446G", "C5463A", "C5495A", "C5579A", "A5614G", "-5620C", "C5621A", "-5626T", "G5632A", "T5684C", "A5703G", "T5705G", "G5707T", "A5716C", "G5717A", "A5718T", "A5720G", "G5725A", "G5730T", "G5781T", "T5787A", "A5788T", "G5791T", "A5793C", "G5794A", "-5801T", "-5802G", "-5803G", "-5804A", "-5805T", "-5809G", "-5810G", "-5811G", "G5812-", "T5813-", "G5814-", "G5815-", "A5816-", "T5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822C", "C5824T", "-5827T", "-5828A", "-5829G", "A5830G", "G5831C", "C5833T", "T5834C", "T5836-", "T5837-", "T5843C", "G5866C", "C5884A", "T5887C", "A5918G", "G5965C", "G5972A", "A5995G", "A6030G", "C6097T", "A6124C", "T6166A", "-6169T", "-6172C", "A6176-", "A6177-", "T6178-", "G6179-", "A6182G", "T6184A", "-6186A", "T6189C", "C6190T", "A6192C", "T6193A", "A6197-", "T6199-", "-6205G", "-6206T", "-6207A", "-6208A", "-6209A", "-6210T", "-6211G", "-6212T", "-6213A", "-6214A", "-6215C", "-6216T", "-6217G", "-6225C", "-6226T", "A6234G", "A6235G", "A6285C", "A6287T", "A6304G", "C6320A", "T6325G", "A6329G", "T6331G", "A6338G", "-6340G", "G6345T", "A6346G", "T6365A", "G6368A", "C6370T", "A6371G", "T6395A", "T6436G", "A6471G", "C6477A", "T6598C", "C6613T", "A6640G", "A6649G", "T6658C", "A6682G", "A6734G", "T6735A", "G6743A", "T6769C", "A6774G", "A6777G", "A6781T", "A6786C", "A6789G", "A6790G", "T6794C", "A6819G", "G6821A", "A6840G", "A6848C", "T6853C", "A6856G", "C6857T", "C6888T", "A6889G", "G6906A", "A6935T", "A6936C", "-6956T", "-6957T", "A6962G", "-6967A", "G6969A", "-6973G", "-6974A", "-6975A", "-6976T", "-6977G", "-6978C", "-6979T", "-6980A", "-6981C", "-6982A", "-6983A", "-6986G", "-6988T", "-6992T", "-6993C", "-6994A", "A7021G", "G7026A", "A7040G", "A7056G", "G7065A", "A7129C", "G7152C", "-7153A", "A7154G", "T7156A", "A7161G", "-7162C", "A7169G", "C7170T", "T7222C", "T7228C", "A7256G", "C7264T", "T7267C", "G7268T", "A7269C", "G7271T", "A7275G", "G7366A", "G7369A", "C7393T", "C7429T", "G7502A", "A7519C", "C7595T", "C7596A", "C7603T", "A7604G", "T7606A", "T7618C", "C7623G", "C7625T", "A7627T", "G7628A", "T7633A", "T7636C", "A7689C", "A7722C", "A7735T", "T7747C", "G7764A", "T7765A", "G7777A", "C7792T", "T7801G", "G7835A", "C7874A", "C7876A", "T7879C", "G7918A", "T7921C", "A7953G", "C8005G", "C8103T", "A8104G", "G8105A", "G8144A", "C8145T", "C8183T", "A8185G", "A8191G", "A8204G", "A8207G", "G8208A", "C8238G", "G8261-", "A8262-", "A8263-", "T8264-", "T8265-", "A8266-", "G8267-", "T8268-", "A8269-", "C8270-", "A8271-", "A8272-", "A8273-", "G8274-", "A8275-", "A8276-", "T8277-", "T8278-", "T8279-", "G8280-", "T8281-", "A8288T", "C8296T", "T8298G", "C8300-", "T8302A", "G8304T", "A8309C", "T8310A", "A8311G", "A8312G", "C8320A", "G8324A", "A8325C", "G8412-", "A8413-", "G8414-", "A8417T", "G8418C", "G8427A", "C8437A", "A8438G", "A8446G", "A8458G", "T8462G", "T8470C", "C8488A", "G8490A", "T8511A", "G8513A", "T8515C", "G8516A", "C8521T", "A8534T", "G8537A", "T8558A", "C8590G", "C8651T", "C8666A", "C8684G", "C8705T", "T8766C", "G8767T", "T8770A", "C8775T", "T8832C", "T8843C", "A8851T", "A8886C", "C8911G", "-8970G", "-8971A", "-8972C", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A", "A8980C", "A8998G", "T9000G", "C9006G", "A9009-", "G9010-", "T9017A", "C9108T"], "INT": ["S17N", "I72V", "I101L", "G106A", "V110I", "D167E"], "RT-p51": ["S123G", "T165I", "Q174K", "G196D", "I202V", "R277K", "Q278H", "M377L", "E396D", "W410Y", "I434L", "A435E", "A437V"], "RT-p66": ["S123G", "T165I", "Q174K", "E177D", "G196D", "I202V", "R277K", "Q278H", "M377L", "E396D", "W410Y", "I434L", "A435E", "A437V", "I452V", "V467I", "S468T", "S491L", "R530K"], "gp120": ["T22A", "V40I", "E59G", "N108-", "T110-", "-112V", "N114A", "-124A", "K127R", "L137V", "E144A", "L156I", "D157E", "N159G", "N160T", "-161S", "S162E", "R164M", "S171T", "A172T", "I173V", "S181T", "N206S", "T208K", "D294E", "D297N", "K307R", "-308S", "K309N", "N311T", "E312R", "K319E", "K322R", "E323K", "-328R", "K329-", "K332Q", "P335S", "T345M", "R351K", "G361S", "-368F", "-370G", "-372Y", "-373M", "-381T", "-382D", "-383N", "-384S", "-385T", "R391K", "I396V", "E401G", "R404Q", "S433T", "N434E", "E436G", "T439V", "I468V", "E472S", "A473S", "K474R"], "gp41": ["A67T", "P98Y", "S101E", "Q108Y", "D109N", "N129T", "N140T", "K144N", "S154K", "N166K", "V178I", "L191I", "E215G", "D217G", "N239S", "A267V", "A268T", "A281I", "I301V", "S302D", "A312G", "E320R", "V321A", "I322F", "Q323C", "R324N", "I325R", "P333-"], "nef": ["E24P", "A27E", "E28-", "G29R", "A32E", "Q35R", "K39R", "H40Q", "L43P", "A49D", "W57R", "L58P", "A60V", "A83G", "C142L", "F143Y", "Q170L", "K182Q", "A190G"], "p17": ["I7V", "G11E", "K12Q", "D14E", "K15R", "I61L", "K62D", "L64I", "Q65H", "L68I", "E106K", "E107R", "C111S", "A119E", "K124N", "-125T", "V128-"], "p2": ["A7V", "N8-", "-10S", "-11T", "-12N", "M14L"], "p24": ["A14P", "A31G", "S33N", "P49S", "S120G", "K154R", "T200N", "T210S"], "p6": ["F15L", "P24S", "S40A", "S47N"], "p7": ["P9H", "I12A", "R29K"], "pro": ["S12T", "Q61D", "L63T", "T74A"], "rev": ["L22I", "H53D", "S86D", "S99N", "S112F", "R113G", "K115E"], "tat": ["N23T", "K24E", "T40K", "P68H", "T82A"], "vif": ["Y30H", "V31R", "R33G", "K36Q", "F39Y", "Y44F", "S46T", "D61E", "D78E", "S130T", "K158Q", "G182D", "T188I", "M189R"], "vpr": ["N16Q", "E48D"], "vpu": ["-2Q", "-3A", "L4R", "-5V", "-6R", "V7L", "V10G", "V26A", "L33W", "V34L", "R37H", "K38R", "D40N", "W41C", "E58D", "T61V", "V69-", "D70-", "M71-", "G72-", "L77-"]}, "labels": {"aa": "INT: S17N, I72V, I101L, G106A, V110I, D167E; RT-p51: S123G, T165I, Q174K, G196D, I202V, R277K, Q278H, M377L, E396D, W410Y, I434L, A435E, A437V; RT-p66: S123G, T165I, Q174K, E177D, G196D, I202V, R277K, Q278H, M377L, E396D, W410Y, I434L, A435E, A437V, I452V, V467I, S468T, S491L, R530K; gp120: T22A, V40I, E59G, N108-, T110-, -112V, N114A, -124A, K127R, L137V, E144A, L156I, D157E, N159G, N160T, -161S, S162E, R164M, S171T, A172T, I173V, S181T, N206S, T208K, D294E, D297N, K307R, -308S, K309N, N311T, E312R, K319E, K322R, E323K, -328R, K329-, K332Q, P335S, T345M, R351K, G361S, -368F, -370G, -372Y, -373M, -381T, -382D, -383N, -384S, -385T, R391K, I396V, E401G, R404Q, S433T, N434E, E436G, T439V, I468V, E472S, A473S, K474R; gp41: A67T, P98Y, S101E, Q108Y, D109N, N129T, N140T, K144N, S154K, N166K, V178I, L191I, E215G, D217G, N239S, A267V, A268T, A281I, I301V, S302D, A312G, E320R, V321A, I322F, Q323C, R324N, I325R, P333-; nef: E24P, A27E, E28-, G29R, A32E, Q35R, K39R, H40Q, L43P, A49D, W57R, L58P, A60V, A83G, C142L, F143Y, Q170L, K182Q, A190G; p17: I7V, G11E, K12Q, D14E, K15R, I61L, K62D, L64I, Q65H, L68I, E106K, E107R, C111S, A119E, K124N, -125T, V128-; p2: A7V, N8-, -10S, -11T, -12N, M14L; p24: A14P, A31G, S33N, P49S, S120G, K154R, T200N, T210S; p6: F15L, P24S, S40A, S47N; p7: P9H, I12A, R29K; pro: S12T, Q61D, L63T, T74A; rev: L22I, H53D, S86D, S99N, S112F, R113G, K115E; tat: N23T, K24E, T40K, P68H, T82A; vif: Y30H, V31R, R33G, K36Q, F39Y, Y44F, S46T, D61E, D78E, S130T, K158Q, G182D, T188I, M189R; vpr: N16Q, E48D; vpu: -2Q, -3A, L4R, -5V, -6R, V7L, V10G, V26A, L33W, V34L, R37H, K38R, D40N, W41C, E58D, T61V, V69-, D70-, M71-, G72-, L77-"}}}]}]}]}]}, {"name": "C_NODE_0000009", "node_attrs": {"div": 0.08019, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["-281C", "C773T", "G5257A", "T5355A", "C5461T", "-5600T", "-5601A", "-5620C", "T5728A", "C6562T", "T6778G", "G7366A", "G7790A", "G7918A", "G8152A", "C8406A", "G8414T"], "gp120": ["N160S", "-308K", "-370S"], "gp41": ["D163N"], "p2": ["-11N"], "rev": ["V102I"], "vif": ["V51I"], "vpu": ["W41R"]}, "labels": {"aa": "gp120: N160S, -308K, -370S; gp41: D163N; p2: -11N; rev: V102I; vif: V51I; vpu: W41R"}}, "children": [{"name": "C_NODE_0000010", "node_attrs": {"div": 0.08613, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G770A", "-1458A", "T1501C", "T1832A", "T1873C", "C1960T", "A2029G", "T2158C", "C2335T", "G2463A", "T2644C", "C3100T", "T3165G", "A3218G", "C3266T", "A3491G", "G3553A", "A4581G", "T5451C", "A5614G", "G5781T", "T6169-", "-6218A", "-6221A", "T6337C", "A6489C", "G6572A", "G6653A", "-7009C", "G7246A", "G7441A", "T7959C", "A8032G", "G8055A", "A8080C", "C8092A", "A8093C", "C8131G", "T8164C", "A8273G", "G8349A", "T8371C", "G8426A", "T8456C", "C8483T", "A8851T", "G8871C"], "INT": ["K269R"], "RT-p51": ["M357R", "I375V"], "RT-p66": ["M357R", "I375V"], "gp120": ["-161N", "N212T", "E240K", "D294E", "K309D"], "gp41": ["L219P", "S251N", "F263L", "I264L", "V321L", "F340L"], "nef": ["G3S", "I10P", "Q170L", "D177H"], "p7": ["I12T"], "pro": ["S12T"], "rev": ["K39R", "I78L", "H82T", "Q95E"], "tat": ["S84P"], "vif": ["K36N"], "vpu": ["E58D"]}, "labels": {"aa": "INT: K269R; RT-p51: M357R, I375V; RT-p66: M357R, I375V; gp120: -161N, N212T, E240K, D294E, K309D; gp41: L219P, S251N, F263L, I264L, V321L, F340L; nef: G3S, I10P, Q170L, D177H; p7: I12T; pro: S12T; rev: K39R, I78L, H82T, Q95E; tat: S84P; vif: K36N; vpu: E58D"}}, "children": [{"name": "KY112386", "node_attrs": {"div": 0.1269, "accession": "KY112386", "clade_membership": {"value": "C"}, "country": {"value": "MW"}, "date": {"value": 2008.0}, "Strain_name": {"value": "CH596.PL.030408.UT.6"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C152A", "T200C", "G224A", "T305A", "T392A", "C419A", "T424A", "C435T", "A509G", "A604C", "A666G", "G667T", "C669A", "G686A", "-700A", "-705A", "-706A", "-707A", "A715-", "G716-", "T734A", "C747G", "T748C", "C749T", "G755A", "G762A", "G837A", "T858C", "A881T", "G908A", "T944C", "T974C", "A989G", "T992G", "G1002C", "T1003A", "G1005C", "A1022G", "A1025C", "A1101G", "G1109A", "C1220T", "A1367G", "G1404A", "G1443A", "A1450G", "C1453-", "A1454-", "-1459A", "G1477A", "C1478T", "T1481C", "C1517T", "C1535T", "G1543A", "A1588G", "C1680A", "A1701T", "G1742A", "C1748T", "A1772G", "C1790T", 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-2L, -3G, -5L, -9R, -10V, V26A, V34L, K44Q, E56D, D60E, T61L, E62S, E63T, S65V, T66D, -68G, V69N, D70L, M71R, G72L, H73L, L74D, R75A, L76N, L77-, D78-, V79-, N80-"}}}, {"name": "C_NODE_0000011", "node_attrs": {"div": 0.09429, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A691C", "A774C", "G1622A", "G1752T", "C1768A", "G1841A", "C1849A", "A1853T", "T1986C", "G2074A", "G2155A", "A3217G", "A3224C", "T3225A", "G3292A", "A3676T", "G4156A", "G4677A", "C4706T", "G5087T", "T5275A", "T5314C", "A5335G", "T5356C", "T5461A", "C5620T", "T5789C", "-5804C", "-5806A", "-5807T", "G5853A", "A6168-", "G6251A", "-6340T", "G6526A", "T6808G", "-6832T", "C6833A", "C6834A", "A6849-", "C7096G", "G7428A", "G7477A", "G7677A", "G7764A", "T7765A", "A7791G", "A8095C", "T8281G", "A8364T", "C8366T", "-8370C", "T8375G", "A8435G", "G8487C", "C8503A", "C8590G", "C8666G", "C8688A", "G8729A", "A8801G", "T8831C", "A8837G"], "RT-p51": ["M377Q"], "RT-p66": ["M377Q", "K527N"], "gp120": ["M56L", "A133T", "N420S"], "gp41": ["S42N", "S125N", "S154K", "N163S", "C326W"], "nef": ["S8C", "A49P", "A54D", "A83G", "H116N"], "p17": ["E55D"], "p24": ["I15L"], "p6": ["A25S", "P30Q"], "pro": ["V15I", "I19L"], "rev": ["I83L"], "vif": ["V31I"], "vpr": ["Q77R", "I84T"], "vpu": ["I13L"]}, "labels": {"aa": "RT-p51: M377Q; RT-p66: M377Q, K527N; gp120: M56L, A133T, N420S; gp41: S42N, S125N, S154K, N163S, C326W; nef: S8C, A49P, A54D, A83G, H116N; p17: E55D; p24: I15L; p6: A25S, P30Q; pro: V15I, I19L; rev: I83L; vif: V31I; vpr: Q77R, I84T; vpu: I13L"}}, "children": [{"name": "KU319529", "node_attrs": {"div": 0.15932000000000002, "accession": "KU319529", "clade_membership": {"value": "C"}, "country": {"value": "ET"}, "date": {"value": 2008.0}, "Strain_name": {"value": "ET106"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G348A", "G350C", "A354T", "T357A", "A360C", "A362T", "G364A", "C365A", "G366C", "A369G", "A374G", "C379G", "A380G", "A387C", "A398G", "C419G", "C435T", "G463A", "A491G", "A500T", "G562A", "A571T", "A581G", "A585G", "C586T", "T593C", "G603A", "A604G", "A606G", "G608C", "G612C", "A613C", "G614A", "C618A", "G619A", "A620G", "A666T", "C672-", "A673-", "A674-", "A675-", "A676-", "A677-", "A678-", "C679-", "A680-", "C684G", "A685C", "G686A", "G687A", "C688A", "A692G", "C698A", "A699G", "-700G", "G703C", "A715-", "G716-", "C747T", "C749A", "G771A", "C772G", "G821A", "C823G", "T885C", "A920G", "T936C", "T1003C", "A1010T", "A1017C", "C1060A", "A1074G", "A1076G", "A1089G", "G1090C", "T1091C", "A1101G", "A1133C", "G1142A", "A1160G", "G1199A", "C1211A", "T1214C", "C1292A", "G1313T", "A1359T", "A1418G", "G1421T", "G1430A", "C1444T", "A1445G", "-1452A", "-1455A", "-1456A", "-1457T", "-1459G", "G1477A", "C1492A", "T1493G", "A1496G", "G1498A", "G1553A", "C1556T", "A1565G", "A1586G", "A1587C", "C1610T", "A1619G", "T1646G", "G1726A", "A1759G", "G1777A", "A1781G", "-1782C", "-1783C", "-1784C", "-1785T", "-1786A", "-1787C", "T1797G", "A1804G", "T1828C", "A1882C", "A1918G", "T1954A", "A1981G", "C1985T", "A2002G", "T2011C", "T2024C", "T2035C", "A2125T", "C2149G", "G2173A", "G2182A", "A2227G", "A2237T", "T2257C", "A2332G", "G2387T", "A2399C", "G2447T", "T2449G", "T2494C", "T2542A", "C2575T", "C2596T", "G2612A", "A2626C", "C2644T", "C2671T", "A2727G", "T2737C", "A2738T", "C2742G", "A2750C", "T2758A", "C2797T", "A2841G", "G2842A", "T2845A", "A2864T", "A2881G", "T2885A", "A2887T", "G2902A", "G2932A", "T2933G", "G2972A", "G3010A", "C3023A", "A3043G", "A3103G", "A3136G", "A3151G", "A3193G", "G3205A", "C3207T", "C3222T", "G3250A", "A3251G", "A3280G", "G3382A", "A3387C", "T3469C", "C3500A", "G3523A", "A3535G", "G3556A", "T3613C", "T3644A", "A3664G", "T3676C", "A3787G", "G3808A", "G3859A", "T3889C", "C3892T", "C3908T", "A3925G", "G3952A", "T3967C", "A3985G", "A4111G", "G4145A", "C4146G", "G4176A", "A4195G", "T4247C", "C4258T", "G4268A", "T4276A", "A4384C", "C4396T", "T4428C", "T4537C", "G4581A", "T4606G", "A4636G", "T4652C", "G4687A", "T4701G", "T4703C", "G4726T", "C4728A", "A4739G", "G4774A", "A4786T", "G4802A", "C4803A", "A4805T", "G4887A", "C4889T", "T4907C", "T4910C", "C4937A", "G4975T", "C4988T", "A4993C", "A5059G", "G5060T", "G5086A", "G5176A", "C5182T", "C5203T", "C5268T", "A5282T", "A5284G", "A5285C", "T5293G", "A5312G", "-5320T", "G5336A", "T5354A", "G5363A", "C5371T", "A5375G", "T5445C", "A5453T", "T5457C", "C5463A", "C5479A", "T5480C", "A5492T", "C5554T", "C5559T", "T5600A", "-5602C", "T5604A", "T5611A", "A5619C", "-5626A", "G5643T", "A5644G", "T5645C", "G5647A", "C5653T", "C5658T", "A5659C", "T5684C", "G5700A", "T5704A", "G5706A", "G5707T", "G5711A", "A5712G", "T5731C", "A5737G", "G5747T", "G5748T", "A5792C", "A5795G", "-5799T", "-5800A", "-5801T", "-5802C", "-5803A", "-5805C", "G5823T", "T5826G", "A5849T", "A5861G", "T5862G", "A5866G", "C5884T", "A5907G", "C5949G", "G6002A", "A6008G", "A6020T", "A6030G", "C6067T", "A6092G", "A6113G", "G6133A", "A6159C", "G6165T", "A6173-", "-6180C", "-6186T", "T6187C", "A6188T", "C6189T", "A6194G", "A6195G", "-6198G", "T6199C", "A6218G", "-6219A", "-6220A", "-6222T", "-6223T", "-6225A", "-6226C", "A6230G", "T6231C", "G6232A", "A6249G", "A6253G", "A6257G", "A6259G", "A6263G", "A6273G", "G6274C", "A6276C", "A6277T", "A6279T", "G6280C", "A6283T", "A6288C", "T6289C", "G6290T", "C6293G", "T6297A", "A6313T", "A6319C", "T6334G", "G6336C", "A6338T", "A6339C", "G6368A", "C6370T", "A6371G", "A6407T", "T6460C", "C6499T", "G6532A", "T6559G", "G6577A", "A6581G", "A6589G", "G6593A", "C6618T", "A6628C", "T6637A", "G6638A", "T6652A", "G6655A", "C6660T", "A6664G", "C6665A", "C6667T", "A6668G", "A6669G", "A6682G", "A6685G", "A6709T", "C6721T", "A6734G", "T6735A", "T6745C", "C6758T", "G6771A", "A6773G", "G6779A", "A6780C", "A6788G", "A6790C", "A6800G", "A6806G", "G6807C", "G6818C", "A6820T", "-6830C", "-6831C", "A6837G", "T6838C", "A6840C", "C6843A", "A6844C", "-6849G", "A6854G", "A6855C", "T6860C", "G6871A", "A6926G", "A6937T", "G6948T", "T6949G", "-6952A", "-6953T", "-6954A", "-6955C", "-6956T", "-6957T", "T6958G", "A6959T", "A6960T", "G6963A", "A6965G", "C6966A", "-6967T", "-6968T", "-6969G", "-6970G", "-6972G", "-6973T", "-6974T", "-6975A", "-6976C", "-6977G", "-6978A", "-6979A", "-6986C", "-6987A", "-6988T", "-6989A", "-6990G", "-6991T", "-6992A", "-6993C", "-6994T", "-6995G", "-6996A", "-6997C", "-6998T", "-6999C", "-7000A", "-7001G", "-7002A", "-7003T", "-7004T", "-7005T", "-7006C", "-7008T", "C7014T", "A7015G", "C7016A", "C7020G", "A7021C", "A7032C", "A7036T", "T7039A", "A7056T", "G7057A", "A7060G", "G7061A", "C7064G", "G7065C", "C7068T", "A7070C", "C7082G", "A7085C", "T7087C", "G7088A", "C7089G", "A7090G", "G7091C", "G7092A", "A7094C", "A7097T", "C7101G", "A7102C", "T7103A", "G7104A", "T7105G", "A7106C", "A7111C", "A7113T", "T7114C", "A7115T", "T7116A", "A7118G", "G7122T", "T7131G", "A7135T", "G7143C", "G7146C", "A7149G", "-7152G", "-7153T", "A7154T", "T7156C", "A7157T", "A7158G", "T7159G", "-7162G", "C7164A", "C7170T", "G7182C", "A7240G", "A7268G", "A7373C", "A7375G", "A7396G", "A7402G", "T7403C", "T7489A", "A7549G", "A7573G", "G7589A", "C7590A", "T7618C", "A7626T", "T7630G", "G7640A", "A7641G", "C7645T", "C7651T", "G7688A", "G7702T", "C7714A", "A7722T", "G7726A", "A7732G", "C7755A", "A7765G", "A7769G", "C7771T", "T7813C", "A7819G", "A7820G", "A7832G", "G7868A", "G7885A", "T7921G", "A7937G", "A7938C", "G7962A", "A7989G", "C7999G", "A8011C", "G8019A", "C8033A", "A8076G", "T8097C", "T8101A", "C8103T", "G8130A", "C8146T", "A8162G", "C8165A", "G8180A", "G8181C", "C8183T", "T8184C", "G8216A", "T8223C", "C8232T", "G8273A", "T8277C", "C8291T", "C8296T", "T8302A", "A8308G", "T8310C", "T8323G", "A8338G", "A8352G", "A8353C", "G8354A", "T8414G", "A8425C", "A8426T", "G8427A", "A8429G", "A8432G", "G8436C", "G8441A", "A8446G", "A8458G", "A8468C", "G8476C", "C8489A", "C8491A", "C8492G", "T8504C", "C8514T", "A8525G", "C8552G", "T8595C", "C8603A", "T8607C", "T8608A", "T8701A", "G8780A", "A8788G", "A8793G", "G8794A", "G8795A", "G8808A", "C8810A", "A8812C", "G8818C", "A8822T", "A8824T", "G8848A", "G8888A", "A8909G"], "INT": ["A124S", "G134D", "V165I", "D167E", "I218T", "R269K"], "RT-p51": ["T48S", "A98S", "K102Q", "V118L", "A173T", "E177D", "K211R", "T215S", "T216R", "K219Q", "H221Q", "K249R", "D250E", "I257L", "L264I", "C280G", "V293I", "L310I", "A371V", "A376V", "T386A", "K431T"], "RT-p66": ["T48S", "A98S", "K102Q", "V118L", "A173T", "E177D", "K211R", "T215S", "T216R", "K219Q", "H221Q", "K249R", "D250E", "I257L", "L264I", "C280G", "V293I", "L310I", "A371V", "A376V", "T386A", "K431T", "L469I", "L517I"], "gp120": ["M3G", "K18R", "A32G", "D50N", "N52D", "E59G", "I80V", "S87G", "N102T", "T104I", "-109A", "-111I", "-112F", "-114G", "-115S", "-122E", "-123I", "-124D", "M126A", "N132S", "T133M", "T135A", "L137V", "K140S", "K141T", "K142I", "K143N", "Y145S", "A146S", "L147V", "F148Y", "S160K", "N161T", "A172T", "I173V", "I185F", "I243V", "E247K", "T255I", "N261K", "E262K", "V267I", "T269I", "P271T", "N272G", "H302Y", "S306N", "K307E", "D309T", "K312D", "R316E", "S318A", "K322H", "-328S", "K329T", "T330N", "K332R", "N334A", "S336P", "N358D", "K361N", "S365M", "-368L", "N369F", "S370N", "T371D", "-372W", "-373S", "-374Y", "-375E", "-376H", "-377S", "-380T", "-381D", "-382S", "-383D", "-384F", "-385I", "T387M", "L388I", "P389R", "K393T", "Q394H", "E401V", "G403R", "R404A", "A405V", "M406L", "P410A", "I411L", "A412R", "G413R", "N414Q", "I415Q", "T416L", "C417S", "S419Q", "T422Y", "G423A", "L424V", "G430A", "G431A", "N432S", "-433S", "N434Y", "N435W", "T437K", "T439I", "G443A", "K472E"], "gp41": ["I24L", "A96N", "Q108L", "D109E", "E110D", "D113S", "D129N", "R133S", "D137E", "N140I", "A151E", "N156D", "I173V", "I177V", "A189T", "F206L", "N212A", "G220E", "Q229R", "D232E", "L244I", "H258R", "L265S", "A267V", "R276Q", "S287G", "L288I", "G293T", "L294S", "D305N", "I307T", "A310V", "I325T", "R330C", "I336T"], "nef": ["K4A", "E28A", "G29R", "A32P", "Q35R", "K39R", "S45T", "A50E", "F85L", "F89H", "D149G", "R151E", "A156T", "N157T", "G159A", "E160D", "N161I", "S169N"], "p1": ["I5M"], "p17": ["A5T", "I7L", "L8I", "G10E", "G11R", "K12E", "T15R", "K18Q", "H28Q", "R43K", "R76K", "Y79F", "T84V", "E90R", "K91D", "E93P", "R95K", "S111C", "Q112-", "Q113-", "K114-", "T115-", "A119K", "D121A", "K122E", "K124A"], "p2": ["A7V", "-10T", "-12S"], "p24": ["A14S", "A31G", "V91A", "M96L", "T110N", "I115V", "S120A", "I124V", "D187E", "T210S", "S225G"], "p6": ["R16K", "K27R", "R33K", "-35P", "-36Y", "S40A", "K42R", "L50S"], "p7": ["S4N", "P9Q", "R11K", "K41Q"], "pro": ["L63S"], "rev": ["A15V", "K30S", "Q51E", "I55L", "T62D", "C85S", "P100S", "K105R", "S106H", "G111D", "S112F"], "tat": ["Y26F", "L35T", "Q39L", "P60S", "L68P", "T77P", "E85K"], "vif": ["V7G", "K17R", "R34K", "F39V", "R47I", "H48N", "I51V", "R63K", "K67I", "Q73N", "G101S", "D117E", "S130I", "Q136P", "K158S", "R167N"], "vpr": ["T55M", "I60L", "I61L", "I63M", "I70V", "A89V"], "vpu": ["L4I", "-5D", "-6F", "-7L", "-9Q", "-10V", "L12F", "L13A", "V14I", "I18L", "V26A", "L33I", "V34L", "R35K", "K44E", "R47I", "E62A", "E63G", "L64I", "S65I", "H73Q", "D81V"]}, "labels": {"aa": "INT: A124S, G134D, V165I, D167E, I218T, R269K; RT-p51: T48S, A98S, K102Q, V118L, A173T, E177D, K211R, T215S, T216R, K219Q, H221Q, K249R, D250E, I257L, L264I, C280G, V293I, L310I, A371V, A376V, T386A, K431T; RT-p66: T48S, A98S, K102Q, V118L, A173T, E177D, K211R, T215S, T216R, K219Q, H221Q, K249R, D250E, I257L, L264I, C280G, V293I, L310I, A371V, A376V, T386A, K431T, L469I, L517I; gp120: M3G, K18R, A32G, D50N, N52D, E59G, I80V, S87G, N102T, T104I, -109A, -111I, -112F, -114G, -115S, -122E, -123I, -124D, M126A, N132S, T133M, T135A, L137V, K140S, K141T, K142I, K143N, Y145S, A146S, L147V, F148Y, S160K, N161T, A172T, I173V, I185F, I243V, E247K, T255I, N261K, E262K, V267I, T269I, P271T, N272G, H302Y, S306N, K307E, D309T, K312D, R316E, S318A, K322H, -328S, K329T, T330N, K332R, N334A, S336P, N358D, K361N, S365M, -368L, N369F, S370N, T371D, -372W, -373S, -374Y, -375E, -376H, -377S, -380T, -381D, -382S, -383D, -384F, -385I, T387M, L388I, P389R, K393T, Q394H, E401V, G403R, R404A, A405V, M406L, P410A, I411L, A412R, G413R, N414Q, I415Q, T416L, C417S, S419Q, T422Y, G423A, L424V, G430A, G431A, N432S, -433S, N434Y, N435W, T437K, T439I, G443A, K472E; gp41: I24L, A96N, Q108L, D109E, E110D, D113S, D129N, R133S, D137E, N140I, A151E, N156D, I173V, I177V, A189T, F206L, N212A, G220E, Q229R, D232E, L244I, H258R, L265S, A267V, R276Q, S287G, L288I, G293T, L294S, D305N, I307T, A310V, I325T, R330C, I336T; nef: K4A, E28A, G29R, A32P, Q35R, K39R, S45T, A50E, F85L, F89H, D149G, R151E, A156T, N157T, G159A, E160D, N161I, S169N; p1: I5M; p17: A5T, I7L, L8I, G10E, G11R, K12E, T15R, K18Q, H28Q, R43K, R76K, Y79F, T84V, E90R, K91D, E93P, R95K, S111C, Q112-, Q113-, K114-, T115-, A119K, D121A, K122E, K124A; p2: A7V, -10T, -12S; p24: A14S, A31G, V91A, M96L, T110N, I115V, S120A, I124V, D187E, T210S, S225G; p6: R16K, K27R, R33K, -35P, -36Y, S40A, K42R, L50S; p7: S4N, P9Q, R11K, K41Q; pro: L63S; rev: A15V, K30S, Q51E, I55L, T62D, C85S, P100S, K105R, S106H, G111D, S112F; tat: Y26F, L35T, Q39L, P60S, L68P, T77P, E85K; vif: V7G, K17R, R34K, F39V, R47I, H48N, I51V, R63K, K67I, Q73N, G101S, D117E, S130I, Q136P, K158S, R167N; vpr: T55M, I60L, I61L, I63M, I70V, A89V; vpu: L4I, -5D, -6F, -7L, -9Q, -10V, L12F, L13A, V14I, I18L, V26A, L33I, V34L, R35K, K44E, R47I, E62A, E63G, L64I, S65I, H73Q, D81V"}}}, {"name": "C_NODE_0000012", "node_attrs": {"div": 0.10377, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A380T", "C767T", "T773C", "G791A", "G1205A", "T1244C", "G1404A", "G1474A", "A1487G", "G1503A", "A1536C", "G1568A", "G1858A", "G1972A", "A2374G", "G2422A", "T2443C", "G2704A", "C2770T", "C3133T", "G3168A", "A3277G", "C3380T", "G3684A", "A3703G", "G3756A", "T3976C", "C4042T", "C4381T", "A4402G", "T4412C", "C4585T", "G4684A", "A4693G", "G4737A", "A4806C", "G4901A", "A4949G", "A5005C", "G5104A", "T5599G", "-5626G", "A5793G", "A5797T", "-5799G", "-5800T", "-5801C", "-5802A", "C5824A", "A5845C", "G5958C", "G6022A", "G6086C", "C6151T", "-6175C", "-6186A", "C6190T", "-6200A", "-6206A", "-6208A", "C6241T", "C6548T", "T6631G", "T6654A", "G6655T", "A6728G", "A6774G", "G6778A", "C6829T", "C6858A", "G6948A", "-7008C", "T7130C", "G7307-", "G7369A", "T7633G", "G7660A", "C7684T", "A7769C", "T7912A", "A8113G", "G8144A", "C8145T", "A8185G", "G8188A", "A8406C", "G8407A", "G8660A", "A8822G", "G8846A", "T8947A"], "INT": ["K215N", "I218L"], "RT-p51": ["Q174K"], "RT-p66": ["Q174K", "R530K", "S554N"], "gp120": ["R35T", "D74E", "E78Q", "H259Q", "V267N", "T366N", "Y367I"], "gp41": ["D121E", "N156Q", "A281I"], "nef": ["R22Q", "Y120F", "M168I", "F202Y"], "p7": ["R3K", "V13I", "I24L"], "rev": ["S89G", "R113G", "A114T"], "vif": ["R33K", "N36S", "D61E", "T74P", "N140T", "I159R", "R173K"], "vpu": ["H73N"]}, "labels": {"aa": "INT: K215N, I218L; RT-p51: Q174K; RT-p66: Q174K, R530K, S554N; gp120: R35T, D74E, E78Q, H259Q, V267N, T366N, Y367I; gp41: D121E, N156Q, A281I; nef: R22Q, Y120F, M168I, F202Y; p7: R3K, V13I, I24L; rev: S89G, R113G, A114T; vif: R33K, N36S, D61E, T74P, N140T, I159R, R173K; vpu: H73N"}}, "children": [{"name": "MF373192", "node_attrs": {"div": 0.15887, "accession": "MF373192", "clade_membership": {"value": "C"}, "country": {"value": "SE"}, "date": {"value": 2013.0}, "Strain_name": {"value": "090ET"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G367A", "T372C", "A378G", "A389G", "G395A", "A418G", "A428G", "A431G", "C434T", "G463A", "G468T", "C471A", "G481A", "A491G", "A499C", "A518G", "A530T", "T587A", "A611G", "G612A", "G619A", "A649C", "A666T", "C679T", "A680G", "T695A", "C698T", "A699-", "A701-", "G702-", "-705C", "-706A", "-707A", "-708G", "-709G", "-710G", "-711A", "-712A", "C719T", "A770G", "G771T", "A776G", "A797G", "A809G", "A810G", "C823G", "G829A", "G836A", "T885C", "C890T", "G956T", "A989G", "A1097T", "T1148C", "C1178T", "C1220T", "C1292A", "T1334C", "A1445T", "-1452G", "-1459G", 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"A158S", "A173E", "K174R", "Y181C", "M184V", "G190S", "I202V", "K211R", "R277K", "A304T", "D324E", "H334S", "R358Q", "T359A", "T369A", "E370A", "V375I", "Q377R", "K395R", "T400A", "I452K", "K454R", "T470N", "L517I", "V559I"], "gp120": ["N5S", "K21N", "T22P", "N52D", "Q86E", "T104S", "-105D", "-106I", "N108-", "T110-", "N113-", "T135A", "E136D", "K141R", "K142Q", "K143T", "V144A", "Y145H", "L147V", "Y149S", "R150T", "V154T", "D157E", "N158A", "S160G", "N161S", "S162N", "L165I", "I166T", "N167S", "A172T", "Y189F", "K240G", "E241D", "I242V", "D251N", "S263T", "E265Q", "R280G", "T292A", "E294A", "K307G", "K308E", "D309Q", "Q315E", "S318I", "K319G", "P326S", "K332L", "P335Q", "L341P", "S360T", "K361A", "N364H", "S365N", "-368T", "T387M", "I395F", "M398L", "E401G", "A412K", "N414L", "K418N", "L424I", "N432D", "-433V", "K472P"], "gp41": ["V2A", "G3L", "I4-", "A6V", "V7M", "I24L", "I72L", "K77R", "K106R", "D113Q", "N125D", "D137V", "N140T", "K144T", "S163G", "N166K", "I177V", "V194I", "Q199K", "N212T", "D232G", "N239S", "N251S", "A268T", "L282S", "S287G", "S302N", "L304F", "I307A", "A312G", "E313A", "E320A", "L321F", "V322A", "R324A", "N331H", "R334T", "L340F"], "nef": ["S3N", "C8R", "P10Q", "V11G", "V16T", "E24A", "A50T", "E59A", "Q107R", "F139Y", "H177D", "K182V", "S187I", "S188Q", "R191H", "L198I"], "p1": ["K4R", "I5L"], "p17": ["G11E", "T15A", "H28R", "R43K", "A45S", "L46I", "G49D", "D55A", "I61M", "Q65H", "I92M", "E93K", "R95Q", "E105A", "S111C", "T115M", "K122-", "G123-"], "p2": ["N11A", "-12S"], "p24": ["A14S", "I27V", "A31G", "S33N", "E75D", "D187E"], "p6": ["R33E", "E34G", "-35P", "-36Y", "T39A", "S40A", "S47N"], "p7": ["K10R", "T12N"], "pro": ["G16E", "K41R", "Q61N", "L63T"], "rev": ["A11Q", "K30N", "Q51E", "S54T", "I55L", "T62A", "S86N", "S88G", "S92F", "S99D", "P100Q", "K105R"], "tat": ["K19Q", "K24N", "K29S", "T40K", "S57T", "L68S", "K71E", "T77P"], "vif": ["L24I", "Y30H", "L59I", "V65I", "K67T", "G101S", "D117E"], "vpr": ["I70V"], "vpu": ["-5L", "-6E", "-7V", "L12F", "V14T", "I18L", "A19V", "T24I", "I25L", "T66A", "N80P"]}, "labels": {"aa": "INT: Q53K, I84M, I101V, A124T, Q136K, I251L, A265V, G283S; RT-p51: T48S, I50V, K65R, K101Q, V108I, E122K, A158S, A173E, K174R, Y181C, M184V, G190S, I202V, K211R, R277K, A304T, D324E, H334S, R358Q, T359A, T369A, E370A, V375I, Q377R, K395R, T400A; RT-p66: T48S, I50V, K65R, K101Q, V108I, E122K, A158S, A173E, K174R, Y181C, M184V, G190S, I202V, K211R, R277K, A304T, D324E, H334S, R358Q, T359A, T369A, E370A, V375I, Q377R, K395R, T400A, I452K, K454R, T470N, L517I, V559I; gp120: N5S, K21N, T22P, N52D, Q86E, T104S, -105D, -106I, N108-, T110-, N113-, T135A, E136D, K141R, K142Q, K143T, V144A, Y145H, L147V, Y149S, R150T, V154T, D157E, N158A, S160G, N161S, S162N, L165I, I166T, N167S, A172T, Y189F, K240G, E241D, I242V, D251N, S263T, E265Q, R280G, T292A, E294A, K307G, K308E, D309Q, Q315E, S318I, K319G, P326S, K332L, P335Q, L341P, S360T, K361A, N364H, S365N, -368T, T387M, I395F, M398L, E401G, A412K, N414L, K418N, L424I, N432D, -433V, K472P; gp41: V2A, G3L, I4-, A6V, V7M, I24L, I72L, K77R, K106R, D113Q, N125D, D137V, N140T, K144T, S163G, N166K, I177V, V194I, Q199K, N212T, D232G, N239S, N251S, A268T, L282S, S287G, S302N, L304F, I307A, A312G, E313A, E320A, L321F, V322A, R324A, N331H, R334T, L340F; nef: S3N, C8R, P10Q, V11G, V16T, E24A, A50T, E59A, Q107R, F139Y, H177D, K182V, S187I, S188Q, R191H, L198I; p1: K4R, I5L; p17: G11E, T15A, H28R, R43K, A45S, L46I, G49D, D55A, I61M, Q65H, I92M, E93K, R95Q, E105A, S111C, T115M, K122-, G123-; p2: N11A, -12S; p24: A14S, I27V, A31G, S33N, E75D, D187E; p6: R33E, E34G, -35P, -36Y, T39A, S40A, S47N; p7: K10R, T12N; pro: G16E, K41R, Q61N, L63T; rev: A11Q, K30N, Q51E, S54T, I55L, T62A, S86N, S88G, S92F, S99D, P100Q, K105R; tat: K19Q, K24N, K29S, T40K, S57T, L68S, K71E, T77P; vif: L24I, Y30H, L59I, V65I, K67T, G101S, D117E; vpr: I70V; vpu: -5L, -6E, -7V, L12F, V14T, I18L, A19V, T24I, I25L, T66A, N80P"}}}, {"name": "MF373131", "node_attrs": {"div": 0.1612, "accession": "MF373131", "clade_membership": {"value": "C"}, "country": {"value": "SE"}, "date": {"value": 2005.0}, "Strain_name": {"value": "010BI"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A359T", "G363A", "C365G", "A378C", "C379A", "G394A", "C419T", "G480A", "T495G", "A500T", "A516T", "A519C", "C540A", "G542T", "C575T", "T602C", "G603A", "A604G", "A605G", "G615A", "C618A", "C641T", "G671A", "A677G", "-700A", "-714A", "C749A", "C774T", "G818A", "G821A", "C875T", "T884C", "T978A", "G987T", "T988C", "A989T", "T992G", "G1019A", "A1025C", "T1058C", "A1070G", "G1077C", "C1078A", "C1115A", "C1118T", "A1263T", "G1313A", "-1452C", "-1459A", "C1598T", "T1646C", "C1656A", "G1664A", "A1725C", "-1729T", "-1730C", "-1731G", "-1732G", "-1733G", "-1734G", "T1735A", "C1736G", "G1737-", "A1738-", "G1739-", "G1740-", "A1741-", "G1742-", "A1746C", "C1751T", "C1756T", "C1761A", "C1767A", "C1795T", "T1853C", "T1854A", "G1912A", "T1987C", "A2063C", "A2242G", "C2266T", "C2296T", 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"T6787G", "A6788G", "T6793C", "T6794C", "G6802T", "A6805C", "G6807A", "G6821A", "A6822C", "-6830G", "-6831G", "T6835A", "A6840T", "A6845-", "T6846-", "A6847-", "A6848-", "A6850-", "A6856C", "A6859T", "C6895T", "T6898C", "A6935C", "A6947G", "C6951T", "-6952T", "-6953T", "-6954T", "-6955T", "-6956A", "-6957A", "A6959G", "G6963C", "T6964A", "-6967T", "-6968A", "-6969A", "-6970T", "-6972A", "-6973T", "-6974A", "-6975C", "-6976T", "T7011G", "C7016A", "C7018T", "A7021C", "G7026C", "A7027T", "A7031T", "A7033C", "C7034A", "A7035G", "A7036G", "T7039A", "A7042G", "A7043G", "G7048A", "T7049A", "G7054A", "G7058A", "A7060G", "G7061T", "A7063G", "G7065C", "A7070C", "T7071C", "C7078A", "C7082A", "C7083T", "C7084G", "A7090C", "G7091C", "A7093C", "A7095C", "A7099T", "T7103A", "T7105A", "A7107C", "A7108G", "A7113C", "T7114A", "G7121A", "A7126T", "A7129T", "G7132A", "C7134G", "A7135G", "C7136A", "G7137A", "T7141G", "G7142A", "G7143C", "A7147T", "A7151-", "A7154G", "T7156G", "-7162G", "G7168C", "C7170T", 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"G8137T", "T8176C", "G8181T", "C8183T", "A8242G", "G8254A", "G8267C", "A8284G", "G8292T", "A8297G", "A8309G", "T8323G", "G8330T", "A8337T", "G8348A", "G8398A", "G8421A", "A8426C", "G8427A", "A8446G", "C8489A", "C8491G", "A8522G", "A8537G", "T8558C", "G8561A", "T8567C", "A8584T", "C8597T", "A8636T", "G8654A", "A8655G", "A8656G", "T8676C", "G8739A", "T8740C", "T8745C", "A8746T", "T8747C", "G8794C", "C8809A", "C8810G", "G8814A", "G8875A", "T8903C", "C8915T", "C8921T", "A8922C", "G8924T", "A8936G"], "INT": ["K14R", "S24N", "M50T", "I101L", "D167E", "I208L", "N222K", "A278T", "R284G"], "RT-p51": ["E122P", "Q145C", "P294V", "R358K", "K366R", "S379C", "T400S", "A435I"], "RT-p66": ["E122P", "Q145C", "P294V", "R358K", "K366R", "S379C", "T400S", "A435I", "A446S", "V466I", "N527S"], "gp120": ["A32G", "E34D", "L56I", "V57G", "N64Y", "I80V", "L83I", "S87G", "K89Q", "-105N", "-106V", "-107T", "-109K", "-111N", "-112T", "-114K", "-115T", "-122M", "-123T", "-124G", "M126I", "T133I", "L137I", "I153V", "S162D", "N201T", "K203E", "T212N", "S236N", "E239Q", "T250A", "K254I", "I256L", "E262K", "E265G", "N272T", "N273R", "K277E", "K307R", "N311Q", "K312E", "R316N", "S318K", "K322E", "E323T", "N327G", "T330N", "K332T", "P335H", "K361Q", "N366D", "-368F", "S370D", "-372T", "-378N", "-379N", "-380T", "-385T", "I386S", "L388I", "R391T", "K393Y", "Q394R", "I396M", "N397D", "M398I", "W399R", "V402M", "G403W", "R404P", "M406P", "P410M", "G413R", "N414T", "C417R", "K418T", "S420T", "G423S", "T427R", "R428N", "D429E", "G430T", "-433E", "N435E", "E436T", "G444R", "G445D", "D446N", "M447R", "D449N", "S453K", "E454D", "Y456Q", "K457A", "K459E", "V461A", "E462S", "I463L", "K464G", "P465A", "L466I", "G467T", "T471K", "K472R", "A473D", "R476T", "V478E", "E479K", "R480A", "K482G"], "gp41": ["V2L", "G5R", "F8L", "L9R", "G10A", "L12V", "G13R", "A14L", "A15P", "L45V", "L91F", "I92M", "A96N", "Q108Y", "D109N", "M118I", "R122K", "K147Q", "T165A", "R196K", "N212H", "P213S", "D230G", "I235V", "H258R", "A267V", "G293V", "V322L", "R324G", "R330L", "I332V", "I336V", "A343S", "Q345L"], "nef": ["R19K", "E24D", "A27T", "E28D", "G29R", "Q35R", "A50G", "Y81F", "E98D", "K105G", "V133T", "Y135L", "R151T", "A156E", "E158K", "R178K", "M194L"], "p1": ["H9N"], "p17": ["L8F", "G10R", "T15H", "R20K", "G49S", "S54A", "I61L", "K62Q", "Q69N", "E90R", "V94I"], "p2": ["-10P"], "p24": ["L83I", "V86S", "H87Q", "M96I", "E98D", "A116Q", "D128E", "T178S"], "p6": ["P11L", "A12E", "-18G", "-19E", "E20-", "E21-", "T23P", "P26L", "Q28K", "Q30K", "T39I"], "pro": ["L19Q", "L63P", "M89L"], "rev": ["K30T", "P31L", "H53R", "S54A", "L73F", "L78I", "E95Q", "V97L", "S99N", "S106P", "S112F"], "tat": ["Y26F", "K29V", "E63T", "S70P", "Q76H"], "vif": ["V7A", "T20K", "H27Y", "G37K", "F39L", "E45D", "R92K", "R93K", "S95N", "Q136P", "Y147F", "R159K", "R167S"], "vpr": ["T55R", "I60L", "I63M", "L68M", "R85L"], "vpu": ["L4-", "A8-", "A19T", "I28L", "V79A", "N80H"]}, "labels": {"aa": "INT: K14R, S24N, M50T, I101L, D167E, I208L, N222K, A278T, R284G; RT-p51: E122P, Q145C, P294V, R358K, K366R, S379C, T400S, A435I; RT-p66: E122P, Q145C, P294V, R358K, K366R, S379C, T400S, A435I, A446S, V466I, N527S; gp120: A32G, E34D, L56I, V57G, N64Y, I80V, L83I, S87G, K89Q, -105N, -106V, -107T, -109K, -111N, -112T, -114K, -115T, -122M, -123T, -124G, M126I, T133I, L137I, I153V, S162D, N201T, K203E, T212N, S236N, E239Q, T250A, K254I, I256L, E262K, E265G, N272T, N273R, K277E, K307R, N311Q, K312E, R316N, S318K, K322E, E323T, N327G, T330N, K332T, P335H, K361Q, N366D, -368F, S370D, -372T, -378N, -379N, -380T, -385T, I386S, L388I, R391T, K393Y, Q394R, I396M, N397D, M398I, W399R, V402M, G403W, R404P, M406P, P410M, G413R, N414T, C417R, K418T, S420T, G423S, T427R, R428N, D429E, G430T, -433E, N435E, E436T, G444R, G445D, D446N, M447R, D449N, S453K, E454D, Y456Q, K457A, K459E, V461A, E462S, I463L, K464G, P465A, L466I, G467T, T471K, K472R, A473D, R476T, V478E, E479K, R480A, K482G; gp41: V2L, G5R, F8L, L9R, G10A, L12V, G13R, A14L, A15P, L45V, L91F, I92M, A96N, Q108Y, D109N, M118I, R122K, K147Q, T165A, R196K, N212H, P213S, D230G, I235V, H258R, A267V, G293V, V322L, R324G, R330L, I332V, I336V, A343S, Q345L; nef: R19K, E24D, A27T, E28D, G29R, Q35R, A50G, Y81F, E98D, K105G, V133T, Y135L, R151T, A156E, E158K, R178K, M194L; p1: H9N; p17: L8F, G10R, T15H, R20K, G49S, S54A, I61L, K62Q, Q69N, E90R, V94I; p2: -10P; p24: L83I, V86S, H87Q, M96I, E98D, A116Q, D128E, T178S; p6: P11L, A12E, -18G, -19E, E20-, E21-, T23P, P26L, Q28K, Q30K, T39I; pro: L19Q, L63P, M89L; rev: K30T, P31L, H53R, S54A, L73F, L78I, E95Q, V97L, S99N, S106P, S112F; tat: Y26F, K29V, E63T, S70P, Q76H; vif: V7A, T20K, H27Y, G37K, F39L, E45D, R92K, R93K, S95N, Q136P, Y147F, R159K, R167S; vpr: T55R, I60L, I63M, L68M, R85L; vpu: L4-, A8-, A19T, I28L, V79A, N80H"}}}]}]}]}, {"name": "C_NODE_0000013", "node_attrs": {"div": 0.08592, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T695G", "A697C", "C698T", "A699G", "A701C", "T885C", "G1199A", "G1421T", "C1444T", "-1452A", "A1619G", "G2182A", "C2671T", "T2719C", "G2728A", "C3252T", "T3497A", "T3613C", "T3889C", "G4684A", "A4805T", "G4975T", "G5226A", "T5237C", "A5282T", "G5336A", "G5437C", "T5599C", "T5789-", "A5795G", "-5799T", "-5803A", "-5804A", "-5806A", "A5866G", "-6167G", "-6186C", "-6198C", "-6200A", "-6203G", "-6208C", "-6209A", "-6211T", "-6212A", "-6215A", "-6217G", "-6222A", "G6323A", "A6682G", "A6777G", "G6779A", "A6790C", "G6818A", "A6854G", "A6855C", "A6947G", "-6984C", "-6985A", "C7018T", "A7056G", "-7152A", "-7153T", "T7156C", "T7630G", "G7885A", "T7921G", "G8019A", "G8254A", "A8367-", "G8368-", "A8372-", "G8373-", "T8374-", "A8522G", "T8813C", "G9007T", "A9009G", "-9033G", "T9115C"], "RT-p66": ["D123S"], "gp120": ["A133I", "S162-", "K312N", "E323K", "N334A", "S365G", "P389Q", "E401G", "N432T"], "gp41": ["F206L"], "nef": ["V11-", "E24D", "K182R"], "p17": ["D121A"], "p2": ["A7V", "-10T"], "p6": ["P30S"], "rev": ["L73F"], "tat": ["A21P"], "vif": ["R33K", "Q73H", "S130I"], "vpr": ["S41N", "Y45H", "I60L", "I84M"], "vpu": ["-2L", "-9V", "-10G"]}, "labels": {"aa": "RT-p66: D123S; gp120: A133I, S162-, K312N, E323K, N334A, S365G, P389Q, E401G, N432T; gp41: F206L; nef: V11-, E24D, K182R; p17: D121A; p2: A7V, -10T; p6: P30S; rev: L73F; tat: A21P; vif: R33K, Q73H, S130I; vpr: S41N, Y45H, I60L, I84M; vpu: -2L, -9V, -10G"}}, "children": [{"name": "C_NODE_0000014", "node_attrs": {"div": 0.0907, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A1278-", "A1544G", "G1687A", "C2107T", "G2567T", "C2589T", "A2611G", "C4072T", "A4407G", "G4685A", "A4693G", "G4737A", "T4868C", "G5748A", "A5754G", "-5800G", "-5811G", "T5843C", "G5860A", "C5924T", "-6172T", "-6175C", "C6183A", "-6202T", "-6207C", "A6326G", "T6328G", "T6334C", "C6599A", "T6769C", "C6824T", "-6986A", "-6989A", "-6993C", "C7078T", "A7149C", "T7150A", "A7158C", "T7159A", "G7947A", "C8065T", "A8110G", "G8144A", "A8161G", "G8490A", "A8636T", "C8651T", "T8701A", "A8823G"], "INT": ["M50I", "K211R"], "RT-p51": ["A158S", "T165I"], "RT-p66": ["A158S", "T165I"], "gp41": ["G215E", "A281T"], "nef": ["A50T", "E98D", "N161D"], "p24": ["N183-"], "p6": ["S3N"], "rev": ["S99N", "K105E"], "tat": ["K29H", "L68P", "D80N"], "vif": ["D78E", "I124L"], "vpu": ["V79A"]}, "labels": {"aa": "INT: M50I, K211R; RT-p51: A158S, T165I; RT-p66: A158S, T165I; gp41: G215E, A281T; nef: A50T, E98D, N161D; p24: N183-; p6: S3N; rev: S99N, K105E; tat: K29H, L68P, D80N; vif: D78E, I124L; vpu: V79A"}}, "children": [{"name": "AF286225", "node_attrs": {"div": 0.13061, "accession": "AF286225", "clade_membership": {"value": "C"}, "country": {"value": "ZM"}, "date": {"value": 1996.0}, "Strain_name": {"value": "96ZM751"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T201C", "A378G", "C379A", "A388G", "G413A", "A416G", "C426A", "A428G", "C435T", "G438A", "A491G", "A519C", "T539C", "A563G", "C575T", "G612A", "T636C", "G671A", "C679T", "G683A", "C684A", "G686A", 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"INT": ["I72V", "I89T", "Y99L", "I113V", "Q136H", "V260I", "K269R", "A278T", "C280S"], "RT-p51": ["K20R", "D123G", "A173T", "K211R", "Q245K", "D250E", "A267-"], "RT-p66": ["K20R", "S123G", "A173T", "K211R", "Q245K", "D250E", "A267-"], "gp120": ["V2A", "N5K", "R35T", "N64K", "K69E", "D71N", "-105A", "-109I", "-111N", "-112T", "-114N", "-115A", "-116N", "-117I", "-118T", "-124T", "E125D", "K127R", "K141R", "K142R", "K143Q", "Y145D", "R150K", "L156I", "D157N", "N158E", "-161S", "-162E", "S181T", "E247K", "L249M", "T255I", "I279V", "D294E", "D297N", "H302Y", "K307E", "K308G", "S318G", "K319E", "K322R", "H324Y", "K332S", "Y367F", "-368N", "N369G", "S370T", "T371N", "-372T", "-373S", "-374N", "-375D", "-376R", "-377S", "-378N", "-379S", "-380T", "I396T", "R404Q", "A412K", "-433N", "N434D", "N435T", "R448K", "I468V", "K474R"], "gp41": ["A30V", "Q108E", "D109R", "S125N", "D129E", "D137V", "K144N", "K147R", "W155*", "N156K", "V178I", "N212T", "G221R", "A245V", "A270G", "V271L", "E272Q", "L273-", "L274-", "G275-", "R276-", "V321L", "V322T", "I332V"], "nef": ["S8R", "-11V", "A15K", "R21A", "H40Y", "A49S", "A54D", "A83S", "S103C", "V133I", "F143Y", "M168I", "M173I", "F202Y"], "p1": ["H9Q"], "p17": ["T15E", "K18R", "L31M", "V35I", "K62Q", "E93K", "T115I", "Q117K", "A118T", "A119E", "A121T", "K122G"], "p24": ["A31G", "S33N", "V91I", "M96I", "S109G", "S120N"], "p6": ["K27R", "S30Q", "R33K", "S40A"], "p7": ["R3K", "K20R", "R32G"], "rev": ["S8N", "K30N", "H53N", "A68P", "I78L", "S88G", "S89T", "G90-", "T91-", "S92-", "G93-", "Q95E", "P100S", "I102V", "A108T"], "tat": ["N7R", "T77P", "P81Q"], "vif": ["A35T", "K36G", "G37R", "R63K", "T74P", "D113N", "R181K", "T188I"], "vpr": ["D7N", "T19A", "P37T", "E48Q"], "vpu": ["-3N", "-5E", "V9R", "G10V", "V14A", "I21A", "T24I", "V34S", "N80I", "L82V"]}, "labels": {"aa": "INT: I72V, I89T, Y99L, I113V, Q136H, V260I, K269R, A278T, C280S; RT-p51: K20R, D123G, A173T, K211R, Q245K, D250E, A267-; RT-p66: K20R, S123G, A173T, K211R, Q245K, D250E, A267-; gp120: V2A, N5K, R35T, N64K, K69E, D71N, -105A, -109I, -111N, -112T, -114N, -115A, -116N, -117I, -118T, -124T, E125D, K127R, K141R, K142R, K143Q, Y145D, R150K, L156I, D157N, N158E, -161S, -162E, S181T, E247K, L249M, T255I, I279V, D294E, D297N, H302Y, K307E, K308G, S318G, K319E, K322R, H324Y, K332S, Y367F, -368N, N369G, S370T, T371N, -372T, -373S, -374N, -375D, -376R, -377S, -378N, -379S, -380T, I396T, R404Q, A412K, -433N, N434D, N435T, R448K, I468V, K474R; gp41: A30V, Q108E, D109R, S125N, D129E, D137V, K144N, K147R, W155*, N156K, V178I, N212T, G221R, A245V, A270G, V271L, E272Q, L273-, L274-, G275-, R276-, V321L, V322T, I332V; nef: S8R, -11V, A15K, R21A, H40Y, A49S, A54D, A83S, S103C, V133I, F143Y, M168I, M173I, F202Y; p1: H9Q; p17: T15E, K18R, L31M, V35I, K62Q, E93K, T115I, Q117K, A118T, A119E, A121T, K122G; p24: A31G, S33N, V91I, M96I, S109G, S120N; p6: K27R, S30Q, R33K, S40A; p7: R3K, K20R, R32G; rev: S8N, K30N, H53N, A68P, I78L, S88G, S89T, G90-, T91-, S92-, G93-, Q95E, P100S, I102V, A108T; tat: N7R, T77P, P81Q; vif: A35T, K36G, G37R, R63K, T74P, D113N, R181K, T188I; vpr: D7N, T19A, P37T, E48Q; vpu: -3N, -5E, V9R, G10V, V14A, I21A, T24I, V34S, N80I, L82V"}}}, {"name": "MK458147", "node_attrs": {"div": 0.15241, "accession": "MK458147", "clade_membership": {"value": "C"}, "country": {"value": "BW"}, "date": {"value": 2015.0}, "Strain_name": {"value": "074_C_310_1_2_w65_383"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T1262G", "A1263C", "A1265C", "C1266G", "G1269C", "T1271G", "T1273G", "A1275-", "A1276-", "A1277-", "A1279-", "T1280-", "T1281-", "G1282-", "G1283-", "A1284-", "T1285-", "G1286-", "A1287-", "C1288-", "A1289-", "G1290-", "A1291-", "C1292-", "A1293-", "C1294-", "T1299A", "T1300A", "G1301A", "T1303C", "G1313T", "G1339A", "C1350T", "A1367G", "A1418G", "T1421C", "A1446C", "-1455A", "-1456A", "-1457T", "C1460-", "T1501C", "A1588G", "G1619A", "T1682C", "C1714T", "G1726A", "G1752A", "C1756A", "C1767T", "G1769A", 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"-8977A", "-8978G", "-8979A", "T9007A", "G9030T", "G9042A", "T9074G", "C9078T", "T9109A", "C9129T", "T9132A"], "INT": ["D6E", "E10D", "E11D", "K14R", "L45Q", "K111R", "V112I", "D167E"], "RT-p51": ["I5V", "D123N", "I202V", "E207K", "A286T", "H334E", "D335G", "V365I", "A376C", "T400L", "T403I", "A435V"], "RT-p66": ["I5V", "S123N", "I202V", "E207K", "A286T", "H334E", "D335G", "V365I", "A376C", "T400L", "T403I", "A435V", "N447S", "E449D", "V467I", "S468T", "S491T", "E492K", "R530K"], "gp120": ["M3L", "K18E", "T22A", "T23P", "E34D", "D50N", "N52D", "M56I", "N70I", "D71-"], "gp41": ["R46K", "M54L", "A67T", "S107T", "Q108L", "D109T", "E110D", "D113N", "Q119E", "D129N", "R133Q", "D137E", "N140I", "N157S", "F188C", "N195K", "I210T", "P211Q", "L219P", "D232G", "S256C", "I266V", "A268V", "A270T", "E272N", "R277N", "S287N", "Q290L", "A310V", "V321G", "V322L", "R324G", "C326G", "R330Y"], "nef": ["G3N", "S9-", "I10-", "G12-", "E18D", "D24A", "A32P", "T48M", "A49D", "N51S", "A54T", "C55I", "E62D", "R71K", "L76T", "A83G", "Y102H", "K104Q", "K105R", "E108D", "Y135F", "R151Q", "A156D", "E158K", "Q170K", "E174D", "E176A", "D177H", "R182M", "D205N"], "p2": ["N8H"], "p24": ["R173A", "A174P", "A177G", "K182-", "W184-", "M185-", "T186-", "D187-", "T188-"], "p6": ["A12V", "R16K", "A25T", "P26Q", "K31R", "T39I", "S47N", "P49L"], "p7": ["I12T", "K41R"], "pro": ["E35D", "Y59F", "D60E", "Q61E", "L63P", "M89L"], "rev": ["K30E", "E32K", "K39R", "P67S", "A68E", "P70S", "Q74L", "R80G", "D84G", "C85G", "S88D", "G90E", "T91P", "G96R", "G104R"], "tat": ["N23T", "Y26F", "H29Y", "I69V", "S75P", "Q76R", "R78Q", "S84P"], "vif": ["K17R", "V31M", "K36S", "F39V", "A62S", "V65I", "R90K", "R93G", "A116T", "H127Q", "I128V", "I159R"], "vpr": ["P35S", "N41D", "E48N", "T55A", "I61L", "A89T"], "vpu": ["L2Q", "-3V", "L4D", "-5Y", "-6R", "-7L", "A8G", "R31K", "L33I", "K44E", "A50T", "T61L", "S65A", "M71V"]}, "labels": {"aa": "INT: D6E, E10D, E11D, K14R, L45Q, K111R, V112I, D167E; RT-p51: I5V, D123N, I202V, E207K, A286T, H334E, D335G, V365I, A376C, T400L, T403I, A435V; RT-p66: I5V, S123N, I202V, E207K, A286T, H334E, D335G, V365I, A376C, T400L, T403I, A435V, N447S, E449D, V467I, S468T, S491T, E492K, R530K; gp120: M3L, K18E, T22A, T23P, E34D, D50N, N52D, M56I, N70I, D71-; gp41: R46K, M54L, A67T, S107T, Q108L, D109T, E110D, D113N, Q119E, D129N, R133Q, D137E, N140I, N157S, F188C, N195K, I210T, P211Q, L219P, D232G, S256C, I266V, A268V, A270T, E272N, R277N, S287N, Q290L, A310V, V321G, V322L, R324G, C326G, R330Y; nef: G3N, S9-, I10-, G12-, E18D, D24A, A32P, T48M, A49D, N51S, A54T, C55I, E62D, R71K, L76T, A83G, Y102H, K104Q, K105R, E108D, Y135F, R151Q, A156D, E158K, Q170K, E174D, E176A, D177H, R182M, D205N; p2: N8H; p24: R173A, A174P, A177G, K182-, W184-, M185-, T186-, D187-, T188-; p6: A12V, R16K, A25T, P26Q, K31R, T39I, S47N, P49L; p7: I12T, K41R; pro: E35D, Y59F, D60E, Q61E, L63P, M89L; rev: K30E, E32K, K39R, P67S, A68E, P70S, Q74L, R80G, D84G, C85G, S88D, G90E, T91P, G96R, G104R; tat: N23T, Y26F, H29Y, I69V, S75P, Q76R, R78Q, S84P; vif: K17R, V31M, K36S, F39V, A62S, V65I, R90K, R93G, A116T, H127Q, I128V, I159R; vpr: P35S, N41D, E48N, T55A, I61L, A89T; vpu: L2Q, -3V, L4D, -5Y, -6R, -7L, A8G, R31K, L33I, K44E, A50T, T61L, S65A, M71V"}}}]}, {"name": "C_NODE_0000015", "node_attrs": {"div": 0.09290999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C419T", "G562A", "A581G", "G608C", "G619A", "A1101G", "A1418G", "G1477A", "C1767T", "G2462A", "G2656A", "C2968T", "T3076A", "G3334T", "C3405T", "T3541C", "G3556A", "G3756A", "G3808A", "T4276A", "A4525G", "T4606G", "T4694G", "T4703C", "C4706T", "T4907C", "A5090G", "T5339C", "-5626G", "A5734G", "G5781T", "-5789C", "-5801T", "A5861G", "T5862G", "G5863A", "-6180A", "A6188G", "-6219A", "-6223T", "T6285A", "A6346G", "A6371G", "A6581G", "A6664G", "C6667T", "A6818C", "-6952A", "-6953T", "-6954A", "-6956A", "-6974A", "-6975C", "-6976T", "A7375G", "A7402G", "C7625A", "C7651T", "A7796T", "T8387A", "A8458G", "T8501A", "G8780A", "T8903C"], "INT": ["D167E"], "RT-p51": ["D123S", "G196K", "T386I", "A437V"], "RT-p66": ["G196K", "T386I", "A437V"], "gp120": ["M3G", "T104S", "N113-", "V144E", "I173V", "R316K", "-372N", "E436N", "K472E"], "gp41": ["I24V", "T165S"], "nef": ["Y120F"], "p17": ["R76K", "K91N", "R95K"], "p24": ["I124V", "S225G"], "p7": ["S4N"], "vif": ["V7G"], "vpu": ["-7V", "L12F", "I43V", "E58D"]}, "labels": {"aa": "INT: D167E; RT-p51: D123S, G196K, T386I, A437V; RT-p66: G196K, T386I, A437V; gp120: M3G, T104S, N113-, V144E, I173V, R316K, -372N, E436N, K472E; gp41: I24V, T165S; nef: Y120F; p17: R76K, K91N, R95K; p24: I124V, S225G; p7: S4N; vif: V7G; vpu: -7V, L12F, I43V, E58D"}}, "children": [{"name": "C_NODE_0000016", "node_attrs": {"div": 0.09817999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A418G", "C426A", "T495G", "G603A", "-714A", "C1211T", "-1459A", "G1568A", "G2224A", "G2925A", "G2926A", "T3450A", "A3503G", "A3756C", "C4569T", "G4687A", "T5062G", "G5086A", "A5225G", "G5269A", "C5333T", "G5538A", "C5579T", "G5707T", "A5728T", "T5787C", "T5870A", "-6172T", "-6174A", "C6189T", "T6199C", "-6213A", "-6216T", "-6218A", "-6221A", "-6226A", "A6283G", "G6336A", "T6395A", "G6605A", "A6689G", "A6691G", "-6955G", "-6968A", "-6970T", "G7160A", "G7589A", "G7677A", "G7961A", "G8173A", "G8231A", "G8304C", "G8385A", "G8388A", "G8441A", "G8487C", "A8494C"], "INT": ["M50I", "A265V"], "gp120": ["S181T"], "gp41": ["G220R", "A310T", "R334T"], "nef": ["V16I", "K39R", "A49P", "N51T"], "p17": ["H28R", "L31I", "S54A", "K95Q"], "rev": ["S8N", "R38Q", "K39R", "V109I"], "tat": ["E2D"], "vif": ["I51V", "I159R"], "vpu": ["V34L", "R41W"]}, "labels": {"aa": "INT: M50I, A265V; gp120: S181T; gp41: G220R, A310T, R334T; nef: V16I, K39R, A49P, N51T; p17: H28R, L31I, S54A, K95Q; rev: S8N, R38Q, K39R, V109I; tat: E2D; vif: I51V, I159R; vpu: V34L, R41W"}}, "children": [{"name": "MN791494", "node_attrs": {"div": 0.14264, "accession": "MN791494", "clade_membership": {"value": "C"}, "country": {"value": "KE"}, "date": {"value": 2010.0}, "Strain_name": {"value": "20337v02_01"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C365G", "A374G", "C482T", "A491G", "A518G", "A521C", "C537A", "A571T", "A605C", "G612A", "C662A", "A665G", "A676G", "G699-", "C701-", "G702-", "G703-", "A704-", "-708G", "-709A", "-710C", "-711A", "-712A", "-713A", "G717A", "G740A", "T824C", "C872T", "G956A", "G987A", "A995T", "T1004C", "T1037C", "G1077A", "T1091C", "G1139A", "G1142A", "C1178T", "A1192G", "C1229T", "A1277G", "T1385C", "A1412G", "G1418A", "C1439T", "T1444C", "A1452G", "C1453T", "-1458A", "A1487G", "A1500G", "T1501G", "C1535T", "C1550T", "G1619A", "G1673C", "-1729T", "-1730T", "-1731C", "-1732A", "-1733G", "-1734G", "T1735A", "C1736A", "G1737-", "A1738-", "G1739-", "G1740-", "A1741-", "G1742-", "C1751T", "A1762G", "C1768T", "G1777-", "G1778-", "G1779-", "A1780-", "A1781-", "C1788-", "T1792C", "C1795T", "A1840G", "A1969G", "A2018T", "A2023G", "C2107T", "A2212C", "C2335T", "A2350G", "G2413A", "G2463A", "G2548A", "A2569C", "C2584T", "C2615G", "A2626G", "C2719T", "A2818G", "C2828A", "T2845G", "G2914A", "C2976A", "A3027G", "A3034G", "T3040C", "C3067A", "C3100T", "C3223A", "A3224G", "G3226A", "T3253C", "G3382A", "T3412C", "T3433C", "G3463A", "T3472A", "G3477A", "G3484A", "A3524G", "C3541A", "C3577T", "A3607G", "C3610T", "A3616C", "A3676C", "A3682G", "G3686A", "G3694A", "A3794C", "G3850T", "A3862G", "C3865T", "C3908T", "C3991T", "C4006T", "A4076C", "T4117C", "A4120G", "G4148A", "T4177C", "C4181A", "T4198C", "A4231G", "T4247C", "A4276G", "A4293G", "A4338G", "A4391T", "T4428C", "A4526C", "A4581G", "A4592C", "A4636G", "A4686G", "A4693G", "A4717T", "C4757T", "T4820G", "G4829A", "T4967C", "A4993C", "A5021G", "A5046C", "C5125T", "C5221T", "A5226G", "A5272G", "T5314C", "A5355G", "G5359C", "G5382T", "T5451C", "T5461A", "C5463A", "T5466C", "G5548A", "C5599G", "-5602G", "A5614-", "A5615-", "T5616-", "T5617G", "T5618A", "C5620T", "T5621C", "G5624T", "G5630C", "C5653A", "T5704G", "A5721G", "A5790-", "G5791T", "A5792G", "-5800G", "-5802C", "-5805C", "A5806C", "-5807A", "G5808T", "-5811G", "T5859G", "G5860A", "G5866A", "A5867G", "T5871G", "A5918G", "G5958A", "C5974T", "G6023A", "T6024A", "T6025G", "A6112G", "C6160T", "T6169G", "-6170A", "-6171T", "-6175T", "A6180T", "A6185G", "C6186A", "C6190T", "A6197G", "C6198T", "A6200C", "-6201A", "-6202A", "-6204A", "-6205G", "-6206T", "-6207A", "C6208T", "A6209T", "-6210T", "-6214C", "-6220A", "-6225A", "A6234G", "A6261T", "A6263C", "G6267C", "G6274A", "A6278G", "A6285C", "T6315A", "A6323G", "T6325C", "A6329G", "T6331A", "A6333C", "A6335C", "T6337C", "A6339G", "-6340T", "A6362T", "G6368A", "T6409A", "T6454C", "T6457C", "A6491G", "A6507T", "A6514G", "G6526A", "A6544G", "T6559G", "A6576G", "G6581A", "C6599A", "G6601A", "C6607A", "A6608G", "G6611A", "T6654A", "C6660T", "G6664A", "A6692G", "G6694A", "T6719A", "A6734C", "T6735A", "C6758T", "A6776G", "G6778T", "A6781C", "A6786G", "C6790T", "C6797G", "A6805G", "T6808G", "A6819T", "A6820G", "A6822G", "C6824T", "C6855A", "C6858A", "T6860C", "C6861A", "T6863G", "T6876C", "A6884G", "A6934G", "A6935C", "C6938T", "G6948A", "T6949A", "A6950T", "T6953A", "A6954T", "-6957T", "C6966G", "-6967T", "-6969G", "-6972T", "-6973A", "C6975G", "T6976C", "-6977A", "-6978A", "-6979T", "-6980G", "-6981A", "-6982T", "-6983A", "-7000A", "-7001A", "-7002G", "-7003T", "-7004C", "-7005A", "-7006A", "-7008C", "-7009A", "A7010-", "C7016A", "T7018A", "C7079T", "C7089A", "A7090G", "A7094C", "A7095T", "A7100C", "C7101A", "A7102C", "T7114C", "C7117A", "C7136T", "T7138G", "T7141C", "G7142A", "G7143A", "A7144C", "G7145A", "A7147T", "A7149C", "A7151G", "T7153G", "A7154C", "A7155C", "C7156T", "-7162T", "A7167T", "C7174T", "G7198A", "T7204C", "A7268G", "A7276G", "G7477A", "A7504C", "C7511T", "T7555A", "A7626T", "A7629G", "G7630A", "T7633G", "G7640A", "T7642C", "C7658G", "A7676G", "C7684T", "C7690A", "C7692T", "G7701C", "C7723A", "A7732G", "T7738C", "G7760A", "A7773G", "T7774C", "C7775T", "C7792T", "A7819G", "T7852G", "T7876C", "A7880T", "G7921A", "A7937G", "C7941A", "C7950T", "G7997A", "A7998C", "C8044A", "G8079A", "C8092T", "C8103T", "A8104G", "G8144A", "A8152G", "T8155C", "C8189T", "A8219G", "A8222C", "A8258T", "G8267A", "T8279G", "G8280C", "C8291T", "T8302C", "T8323G", "T8332G", "A8364T", "G8365C", "C8366T", "-8367A", "-8368G", "-8370C", "-8372G", "-8373G", "-8374G", "A8378G", "C8386A", "A8405G", "A8406C", "G8407A", "T8456C", "A8486G", "C8489A", "C8500A", "A8501G", "G8528A", "G8531C", "A8537T", "A8549T", "A8604G", "T8608G", "C8609G", "C8666G", "C8669T", "C8684T", "T8687C", "C8775T", "C8835T", "A8887G", "A8892C", "G8945A"], "INT": ["K7Q", "E25D", "I101L", "A125T", "Q136K", "K173R", "K188R", "T206S", "I218T", "I251L", "K269R", "K273Q"], "RT-p51": ["E39D"], "RT-p66": ["E39D"], "gp120": ["V2G", "N5D", "L6R", "T22A", "R35K", "V57K", "N108-", "T110-", "-122E", "-123K", "-124E", "K127R", "I133V", "E136V", "R138T", "K142E", "E144A", "V154E", "N159E", "S160T", "-161H", "-162S", "T170S", "A172T", "N213D", "Q218L", "E241G", "L249I", "D251K", "N252D", "A253T", "V267E", "T269I", "I279-", "R280-", "I281-", "G284-", "P285-", "G286-", "Q287-", "T288-", "F289-", "Y290V", "A291G", "T292I", "D294P", "H302Y", "K308G", "K309N", "N311S", "Q315E", "S318R", "K322L", "K323G", "H324Y", "A334E", "P335Q", "S336H", "S337A", "L341P", "T344A", "K361Q", "G365E", "T366S", "Y367M", "-368I", "T371S", "N372S", "-373I", "-377S", "I386-", "T387-", "L388-", "Q389P", "P409S", "A412E", "N414L", "T416H", "R428W", "G430N", "G431S", "-433E", "N434P", "E438V"], "gp41": ["V24M", "A96T", "Q108I", "D109G", "D113N", "Q119E", "S125D", "D129E", "T130I", "R133T", "N140K", "D153N", "N157S", "I193L", "N212D", "P213Q", "P216L", "D232T", "D247E", "R259Q", "A267V", "A281T", "T306A", "I307L", "I319L", "V321L", "V322I", "C326A", "R330C", "F340L"], "nef": ["I10L", "-11G", "A15K", "R22Q", "A53E", "E63D", "E65D", "S88G", "F89W", "K184Q"], "p17": ["I61M", "K62N", "L68I", "Y79F", "E90N", "E93K", "N109K", "K114R", "A121D", "G123K", "K124I", "-125S", "V128-", "S129-"], "p2": ["V7A", "T10V"], "p24": ["V86I", "A116T", "K154R"], "p6": ["-18Q", "-19E", "E20-", "E21-", "Q28R", "S30L", "R33T", "E34S", "-35I", "P37-", "L38-", "T39-"], "p7": ["I12G"], "pro": ["T74S"], "rev": ["K30R", "R50N", "F73L", "H82Y", "S86G", "S99N", "I102V", "S103P", "A114V"], "tat": ["A58T", "P81S"], "vif": ["E2D", "K17R", "R34E", "K36R", "Y44F", "D78E", "Q136P", "I154L", "R167K", "T180I"], "vpr": ["N41G", "M84V", "R85P", "A93S"], "vpu": ["-3E", "L4S", "-5I", "-6D", "F12L", "L16I", "L33V"]}, "labels": {"aa": "INT: K7Q, E25D, I101L, A125T, Q136K, K173R, K188R, T206S, I218T, I251L, K269R, K273Q; RT-p51: E39D; RT-p66: E39D; gp120: V2G, N5D, L6R, T22A, R35K, V57K, N108-, T110-, -122E, -123K, -124E, K127R, I133V, E136V, R138T, K142E, E144A, V154E, N159E, S160T, -161H, -162S, T170S, A172T, N213D, Q218L, E241G, L249I, D251K, N252D, A253T, V267E, T269I, I279-, R280-, I281-, G284-, P285-, G286-, Q287-, T288-, F289-, Y290V, A291G, T292I, D294P, H302Y, K308G, K309N, N311S, Q315E, S318R, K322L, K323G, H324Y, A334E, P335Q, S336H, S337A, L341P, T344A, K361Q, G365E, T366S, Y367M, -368I, T371S, N372S, -373I, -377S, I386-, T387-, L388-, Q389P, P409S, A412E, N414L, T416H, R428W, G430N, G431S, -433E, N434P, E438V; gp41: V24M, A96T, Q108I, D109G, D113N, Q119E, S125D, D129E, T130I, R133T, N140K, D153N, N157S, I193L, N212D, P213Q, P216L, D232T, D247E, R259Q, A267V, A281T, T306A, I307L, I319L, V321L, V322I, C326A, R330C, F340L; nef: I10L, -11G, A15K, R22Q, A53E, E63D, E65D, S88G, F89W, K184Q; p17: I61M, K62N, L68I, Y79F, E90N, E93K, N109K, K114R, A121D, G123K, K124I, -125S, V128-, S129-; p2: V7A, T10V; p24: V86I, A116T, K154R; p6: -18Q, -19E, E20-, E21-, Q28R, S30L, R33T, E34S, -35I, P37-, L38-, T39-; p7: I12G; pro: T74S; rev: K30R, R50N, F73L, H82Y, S86G, S99N, I102V, S103P, A114V; tat: A58T, P81S; vif: E2D, K17R, R34E, K36R, Y44F, D78E, Q136P, I154L, R167K, T180I; vpr: N41G, M84V, R85P, A93S; vpu: -3E, L4S, -5I, -6D, F12L, L16I, L33V"}}}, {"name": "AB254148", "node_attrs": {"div": 0.13599999999999998, "accession": "AB254148", "clade_membership": {"value": "C"}, "country": {"value": "ZM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02ZM115"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T95C", "T155G", "T159-", "-160C", "G162T", "G224A", "G254A", "C264T", "-280G", "C379A", "G407A", "C434T", "C435T", "A519C", "C525T", "A530C", "C540A", "T572C", "C590A", "T593C", "A604G", "A606G", "-700A", "C749T", "A758G", "A774C", "G821A", "A869G", "T953C", "T978G", "T983C", "A986C", "G987C", "T988C", "A989C", "T992A", "G998A", "A1025T", "C1115A", "C1187T", "T1271A", "G1302A", "G1339A", "A1359T", "C1448T", "-1458C", "G1472A", "T1484C", "G1503A", "T1511C", "C1517T", "G1552A", "A1587G", "A1595G", "A1618G", "G1622A", "A1670G", "G1687A", "G1697A", "G1742A", "G1752A", "T1754G", "T1767G", "G1777A", "-1782C", "-1783C", "-1784C", "-1785T", "-1786A", "-1787C", "A1804G", "C1831T", "T1832A", "A1839C", "G1841A", "A1882G", "A1906G", "A1908G", "A1981C", "T1986C", "A1988C", "A2002G", "A2032C", "C2083T", "C2202A", "T2206C", "G2221A", "T2257C", "A2289G", "G2392A", "C2467T", "T2527C", "T2533C", "G2539A", "A2570G", "C2596T", "C2605A", "T2607A", "G2612A", "C2615A", "A2629G", "T2657C", "G2681A", "G2682T", "A2727G", "G2761A", "G2788A", "G2902A", "C2908T", "C2927A", "A2929C", "C2930T", "T2944G", "C3055T", "C3095G", "A3127G", "T3165G", "G3168A", "A3170G", "A3224C", "T3225A", "C3380T", "G3385A", "A3435G", "G3438A", "C3475T", "A3491G", "A3529G", "T3551C", "A3565G", "A3571G", "G3631A", "C3779T", "A3880G", "A3910G", "C4006A", "C4047A", "T4074A", "C4079T", "C4123T", "T4132A", "G4145A", "C4146A", "A4195G", "G4252A", "A4255G", "G4264A", "A4273G", "C4357T", "T4640C", "G4664A", "G4677A", "A4739G", "G4774A", "A4787G", "T4805G", "A4949G", "C4978A", "A5085C", "G5087A", "G5099A", "G5100A", "A5103C", "A5257G", "T5282A", "C5303T", "T5311C", "A5336C", "G5370T", "A5375G", "G5382C", "C5398A", "G5448T", "T5454C", "A5462G", "C5479T", "T5484C", "C5495G", "T5577C", "A5581G", "-5602C", "T5616G", "G5643T", "T5704C", "G5717A", "A5720G", "A5739T", "G5775C", "A5790G", "A5793G", "G5795A", "A5797T", "T5799A", "-5800T", "T5801C", "-5802G", "A5804C", "-5805A", "-5807T", "T5843C", "G5853A", "C5878A", "A5896G", "A5907G", "A5959G", "C6007T", "A6030G", "G6073A", "C6110G", "G6121A", "-6170G", "-6171C", "-6175G", "A6176G", "A6177T", "G6179A", "A6182G", "C6183G", "A6194G", "-6201T", "-6202G", "G6203A", "-6204C", "-6205C", "-6206G", "-6207T", "-6210A", "-6214T", "G6217C", "A6219T", "-6220G", "-6225G", "G6232A", "G6251A", "A6262G", "G6314T", "A6316G", "T6331C", "A6333G", "A6335G", "T6337G", "A6338-", "A6339-", "C6370A", "T6397G", "A6438T", "C6469T", "T6490A", "C6563T", "A6571G", "G6577A", "T6586A", "C6618T", "T6631G", "T6637A", "G6638A", "A6639C", "A6640C", "T6641C", "C6670T", "A6773G", "G6777A", "A6788G", "A6800G", "T6808C", "G6821A", "A6823G", "C6833T", "C6834T", "A6840C", "A6844G", "A6850G", "G6871A", "A6905C", "G6906A", "A6956T", "-6957C", "-6967A", "-6969A", "-6972G", "-6973T", "-6983T", "-6986A", "-6987A", "-6988C", "A7007-", "C7020A", "G7065A", "C7084T", "A7148G", "A7149G", "A7154G", "-7162G", "A7216G", "G7234A", "A7261T", "A7268C", "A7269C", "A7373G", "G7390A", "G7459A", "C7590A", "C7603T", "A7625T", "A7627C", "G7628C", "A7735G", "T7747C", "C7771T", "A7791G", "T7801A", "A7818G", "C7825T", "A7918G", "G7921C", "C7951A", "T7959C", "A8019G", "C8047T", "C8051A", "C8065T", "G8130A", "C8131G", "T8209C", "A8219T", "C8220A", "T8264A", "G8280T", "G8292T", "A8294C", "G8350C", "T8369-", "T8371-", "T8375-", "G8376-", "G8377-", "A8378-", "A8396C", "A8402G", "A8409G", "T8414G", "A8425T", "G8426A", "A8435G", "C8489T", "C8492T", "G8526C", "A8534C", "A8537G", "G8554A", "T8568C", "A8573G", "T8585C", "A8591G", "C8597T", "C8651T", "A8655C", "C8688A", "C8699A", "A8719G", "G8729A", "A8801G", "G8807A", "A8851T", "A8870G", "G8871C", "A8872G", "A8874G", "A8882G", "A8886C", "G8905T", "C8906G", "A8922C", "T8935A", "T8948C", "A8969G", "C8990A", "T9029C", "A9135G"], "INT": ["A91E", "F100Y", "S119R", "A124N"], "RT-p51": ["A36E", "K65R", "I159V", "F171Y", "A173T", "Q174K", "I178M", "Y188H", "K196M", "K211R", "R277K", "Q278N", "H334D", "M357R", "R358K", "T359A", "M377Q", "E413D"], "RT-p66": ["A36E", "K65R", "I159V", "F171Y", "A173T", "Q174K", "I178M", "Y188H", "K196M", "K211R", "R277K", "Q278N", "H334D", "M357R", "R358K", "T359A", "M377Q", "E413D", "N447S", "R448K", "I452K", "S468T", "T470A", "S554T"], "gp120": ["L6M", "K18R", "E59G", "Q86E", "-105D", "-106A", "-107K", "-109D", "-111M", "-112T", "-113N", "-124G", "M126I", "L137I", "V154L", "D157N", "-161E", "Y195F", "N212K", "I243V", "D251N", "T255I", "H259Q", "N261K", "E262T", "S263P", "I279V", "K307E", "N312D", "K316E", "K322Q", "P326F", "-328T", "K329-", "R351Q", "-368M", "-373S", "-374T", "-375S", "-376N", "R404Q", "T432G", "-433N", "N434D", "N436K", "E472P"], "gp41": ["A96N", "Q108Y", "D109Q", "E110D", "S125N", "N163S", "N166K", "K172R", "L206F", "L219P", "N239S", "R276Q", "T306Y", "V321I", "C326F", "R330L", "N331H"], "nef": ["G3A", "S9-", "I10-", "G12-", "A15T", "E18D", "I20M", "T23A", "D24E", "E28V", "E62Q", "R71K", "K105Q", "E108D", "H116N", "N126S", "Q170L", "D177R", "R178G", "R182Q", "S188M", "M194L", "L198Q"], "p17": ["T15K", "K62Q", "Q65H", "Q69K", "E90R", "N91D", "A119E", "K122D"], "p2": ["N11H"], "p24": ["I15L", "L83V", "V86P", "H87Q", "E98D", "D128E", "D180E", "V191I", "R203K", "T210S"], "p6": ["S3N", "A25T", "S30A", "R33K", "-35P", "-36Y", "K42R", "S51L"], "p7": ["V13I", "R29K", "K41E", "E51G"], "pro": ["S12T", "K14T", "V15I", "I36M", "N37S", "Q61H", "L63P", "I64L"], "rev": ["I21T", "P67S", "A68E", "Q95E"], "tat": ["L8I", "K24N", "K29C", "T40R", "I69V", "P81Q", "S84P"], "vif": ["V31I", "R34K", "R63K", "H73Q", "P131H", "R167Q", "D172N"], "vpr": ["N41D", "L60I", "Q77H", "A89S", "A93P"], "vpu": ["-3K", "-5L", "-6A", "A8G", "R37K", "K38R", "K44N", "E56D", "V79A"]}, "labels": {"aa": "INT: A91E, F100Y, S119R, A124N; RT-p51: A36E, K65R, I159V, F171Y, A173T, Q174K, I178M, Y188H, K196M, K211R, R277K, Q278N, H334D, M357R, R358K, T359A, M377Q, E413D; RT-p66: A36E, K65R, I159V, F171Y, A173T, Q174K, I178M, Y188H, K196M, K211R, R277K, Q278N, H334D, M357R, R358K, T359A, M377Q, E413D, N447S, R448K, I452K, S468T, T470A, S554T; gp120: L6M, K18R, E59G, Q86E, -105D, -106A, -107K, -109D, -111M, -112T, -113N, -124G, M126I, L137I, V154L, D157N, -161E, Y195F, N212K, I243V, D251N, T255I, H259Q, N261K, E262T, S263P, I279V, K307E, N312D, K316E, K322Q, P326F, -328T, K329-, R351Q, -368M, -373S, -374T, -375S, -376N, R404Q, T432G, -433N, N434D, N436K, E472P; gp41: A96N, Q108Y, D109Q, E110D, S125N, N163S, N166K, K172R, L206F, L219P, N239S, R276Q, T306Y, V321I, C326F, R330L, N331H; nef: G3A, S9-, I10-, G12-, A15T, E18D, I20M, T23A, D24E, E28V, E62Q, R71K, K105Q, E108D, H116N, N126S, Q170L, D177R, R178G, R182Q, S188M, M194L, L198Q; p17: T15K, K62Q, Q65H, Q69K, E90R, N91D, A119E, K122D; p2: N11H; p24: I15L, L83V, V86P, H87Q, E98D, D128E, D180E, V191I, R203K, T210S; p6: S3N, A25T, S30A, R33K, -35P, -36Y, K42R, S51L; p7: V13I, R29K, K41E, E51G; pro: S12T, K14T, V15I, I36M, N37S, Q61H, L63P, I64L; rev: I21T, P67S, A68E, Q95E; tat: L8I, K24N, K29C, T40R, I69V, P81Q, S84P; vif: V31I, R34K, R63K, H73Q, P131H, R167Q, D172N; vpr: N41D, L60I, Q77H, A89S, A93P; vpu: -3K, -5L, -6A, A8G, R37K, K38R, K44N, E56D, V79A"}}}]}, {"name": "C_NODE_0000017", "node_attrs": {"div": 0.10314, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G463A", "C618A", "G690A", "A715-", "G716-", "C749T", "G770A", "T936C", "A1010C", "G1077A", "G1142A", "A1160G", "G1622A", "G1713A", "C1714T", "C1751T", "G1757A", "A1772G", "T1832A", "A2029G", "C2083T", "T2302C", "T2452C", "C2620T", "G2681A", "G2682A", "G2833A", "G2872A", "C3140T", "G3154A", "C3266T", "G3379A", "A3397G", "T3469A", "A3497T", "A3524G", "G3850T", "C3865T", "A3925G", "T4074A", "C4258T", "C4396T", "G4737T", "T4800C", "C4889T", "T4910C", "A5024G", "G5066A", "G5087C", "A5159G", "T5263C", "C5268T", "C5306T", "A5432G", "C5437G", "G5448A", "T5454C", "A5462C", "T5466C", "T5475C", "A5544C", "C5578T", "G5624C", "G5643T", "G5948A", "G6022A", "A6177C", "C6190T", "C6198A", "-6202C", "-6206A", "-6207G", "C6208A", "-6213T", "-6214A", "-6218C", "T6238-", "G6251A", "A6330G", "T6460C", "A6825T", "-6955C", "-6957A", "-6980A", "-7008C", "-7009C", "C7020A", "A7147T", "-7162C", "G7168A", "T7325C", "A7769G", "A7819G", "G7964A", "G7997A", "C8038T", "C8103T", "A8161C", "T8264G", "A8276T", "G8365-", "G8426A", "A8446G", "T8585C", "T8595G", "T8608G", "C8609G", "C8666G", "C8699T", "G8807A", "C8813T", "A8904C", "G8905A", "C8906T"], "INT": ["E25D", "F100Y"], "RT-p51": ["I434M"], "RT-p66": ["I434M", "V466I", "T477A"], "gp120": ["A32T", "M56I", "E125-", "M126-", "K127-", "N167S", "K308R", "H324L", "-368N", "-385T", "S453N"], "gp41": ["F8L", "Q108K", "N156D", "G221R", "A267V", "I325F"], "nef": ["F85V", "F89W", "S188H"], "p17": ["R43K"], "p6": ["A12I"], "pro": ["S12T"], "rev": ["E10A", "R50K", "K105Q"], "tat": ["P21A"], "vif": ["I51L", "R167S"], "vpr": ["T19A", "T55M"], "vpu": ["S65L"]}, "labels": {"aa": "INT: E25D, F100Y; RT-p51: I434M; RT-p66: I434M, V466I, T477A; gp120: A32T, M56I, E125-, M126-, K127-, N167S, K308R, H324L, -368N, -385T, S453N; gp41: F8L, Q108K, N156D, G221R, A267V, I325F; nef: F85V, F89W, S188H; p17: R43K; p6: A12I; pro: S12T; rev: E10A, R50K, K105Q; tat: P21A; vif: I51L, R167S; vpr: T19A, T55M; vpu: S65L"}}, "children": [{"name": "KU319542", "node_attrs": {"div": 0.14418, "accession": "KU319542", "clade_membership": {"value": "C"}, "country": {"value": "ET"}, "date": {"value": 2008.0}, "Strain_name": {"value": "ET148"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "A354G", "T355C", "A362G", "G363A", "A369-", "A370-", "A371-", "C379T", "A380G", "A388G", "A410G", "C434T", "A500T", "A520G", "A530C", "T587C", "G612A", "G614T", "C641T", "A666T", "A682C", "G686A", "G695A", "T698G", "-700A", "C701A", "-705G", "-706C", "-707A", "T731C", "G771T", "A774C", "T788C", "C845T", "C872A", "A968G", "T978A", "T983C", "G1002A", "C1078A", "A1079T", "T1091C", "T1103C", "C1115A", "C1118T", "C1169T", "A1217G", "G1313A", "T1322C", "C1331T", "A1359T", "T1421G", "-1455A", "-1456A", "-1457T", "C1460-", "A1487G", "G1489C", "C1492T", "T1493A", "A1495G", "A1497G", "G1498A", "A1499G", "T1511C", "C1523A", "G1543A", "T1547C", "C1598T", "A1642G", "C1656T", "A1657G", "G1742A", "C1750T", "G1852A", "A2059G", "A2131G", "T2171C", "G2173A", "C2199A", "C2202A", "C2281T", "G2293A", "C2326T", "C2353T", "T2365A", "A2380C", "C2467T", "A2473G", "C2615A", "C2635T", "T2644C", "C2694A", "A2698G", "A2699G", "C2720T", "A2727G", "A2773G", "G2837A", "A2839C", "A2920G", "A2938G", "C2960T", "G2972A", "A3043G", "T3045C", "C3095A", "A3145G", "A3224C", "T3225A", "T3343C", "A3367G", "C3380T", "A3449G", "T3450C", "A3481G", "T3496G", "G3523A", 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"K18R", "E55D", "K62R", "Q65H", "E93N", "S111C", "Q116P", "A119K", "K122E", "K124A"], "p24": ["A14S", "I15L", "L83I", "V91I", "A116N", "D128E", "T210S"], "p6": ["P24L"], "p7": ["G8A", "P9L", "K10R", "R11E", "R26K"], "rev": ["I18T", "P67S", "F73L", "S86G", "G104R"], "tat": ["K19S", "K24T", "K29S", "S31C", "L35V", "V36A", "Q39S", "S46C", "L68S", "I69V", "T77A", "E85K", "S87*"], "vif": ["D61E", "G101S", "A116T", "D117E", "K158R"], "vpr": ["E48A", "I63T", "M84L", "R85Q"], "vpu": ["L2-", "L4-", "T24I", "K38R", "V43I", "E62G", "E63G", "L64I", "L65I", "T66N", "M67N", "-68G"]}, "labels": {"aa": "INT: K7Q, I72V, Q95S, V150A, I218T; RT-p51: T35K, A36E, Q174K, A200E, I202V, K211R, E248N, V293I, V317A, H334N, M377Q, E413D; RT-p66: T35K, A36E, Q174K, A200E, I202V, K211R, E248N, V293I, V317A, H334N, M377Q, E413D, I452A, N519S, V531I, S554N; gp120: N5D, K18R, T22A, T23P, N52D, V57A, E59K, N64S, S104N, -105D, -106T, -107Y, -109T, -111N, K143T, R150K, I153V, L156-, D157-, N158-, N159-, S160-, Y163-, R164-, I166N, N212E, E241I, I242V, I243-, R245K, E265D, D297N, Q300E, K307E, S318G, K323E, K332A, S360T, G365S, -373S, -374T, -375S, -376N, -377S, L388I, G401E, K418N, N420T, L424I, T432N, -433I, N434T, N436D, E438K, R441L, R448M, D449N, K457N, I463N, E472S, R480K, E481K; gp41: V2I, V7A, G13R, V24L, A67T, L91I, P98L, S101T, D109E, D113E, D137I, K144E, D153N, S154K, N160S, N163D, N166H, K172R, N212S, G220E, R231K, D232N, R259Q, A268G, R277S, S287N, L304F, V322A, C326G, A328G; nef: -11V, R21K, Q35R, S45T, A50T, A54D, E63Q, R71K, K104R, Y115H, R151K, R182K; p1: K4R, H9C; p17: I7A, G10S, K12-, T15M, K18R, E55D, K62R, Q65H, E93N, S111C, Q116P, A119K, K122E, K124A; p24: A14S, I15L, L83I, V91I, A116N, D128E, T210S; p6: P24L; p7: G8A, P9L, K10R, R11E, R26K; rev: I18T, P67S, F73L, S86G, G104R; tat: K19S, K24T, K29S, S31C, L35V, V36A, Q39S, S46C, L68S, I69V, T77A, E85K, S87*; vif: D61E, G101S, A116T, D117E, K158R; vpr: E48A, I63T, M84L, R85Q; vpu: L2-, L4-, T24I, K38R, V43I, E62G, E63G, L64I, L65I, T66N, M67N, -68G"}}}, {"name": "KU319539", "node_attrs": {"div": 0.16842000000000001, "accession": "KU319539", "clade_membership": {"value": "C"}, "country": {"value": "ET"}, "date": {"value": 2008.0}, "Strain_name": {"value": "ET136"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A362C", "C365G", "G366-", "G367-", "A368-", "A369G", "A378G", "C435T", "G481A", "A491G", "T495G", "A511G", "A516C", "A541C", "A571T", "G581A", "G603A", "C662A", "A663G", "A691C", "-700G", "-705A", "-706A", "-707T", "C767T", "A776T", "T789C", "C827T", "G829A", "G837A", "T858C", "T988C", "T992G", "T1001G", "G1019A", "C1229T", "C1292A", "C1409T", "A1412G", "T1451C", "C1453A", "A1454T", "-1455G", "-1456C", "-1457A", "-1458C", "-1459A", "T1481C", "T1501C", "G1503A", "A1536C", "C1571T", "A1601G", "C1615A", "G1697A", "A1715G", "G1726A", "C1790T", "T1792C", "A1804G", "G1845A", "T1854C", "C1985A", "T1986G", "A2063T", "A2174T", "G2305A", "A2404G", "G2413A", "C2488T", "C2575T", 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"A8364-", "C8366-", "T8369-", "T8371-", "T8375-", "G8376T", "G8377C", "C8383G", "A8396C", "C8410G", "C8445T", "C8469A", "A8474C", "C8500A", "C8521A", "G8528A", "G8532C", "A8534G", "A8573G", "C8597G", "A8636T", "T8640A", "C8651T", "G8660A", "G8682A", "C8684G", "T8701A", "A8718T", "A8719G", "A8793G", "A8812C", "T8831C", "G8846A", "G8848A", "G8864T", "A8887G", "A8892C", "C8903T", "G8933C", "T8947A"], "INT": ["I31V", "I60T", "T210A"], "RT-p51": ["T27S", "R277K", "L279M", "A371T", "T400M", "A435V"], "RT-p66": ["T27S", "R277K", "L279M", "A371T", "T400M", "A435V", "T470N", "R530K", "S554K", "I556V"], "gp120": ["V2I", "G3I", "G4R", "L6V", "W7L", "V8F", "V10I", "V14G", "V16D", "A20T", "C26F", "A27L", "S28T", "D29N", "E34K", "V47G", "T49D", "D50T", "P53A", "Q54P", "V57I", "E59V", "N60H", "V61G", "T62A", "E63Q", "N66T", "M67L", "W68R", "N70I", "D74E", "M76T", "H77P", "E78D", "I81L", "W84C", "Q86E", "S87I", "P90S", "L94M", "L97V", "N102-", "C103-", "S104-", "N108-", "T110-", "I133N", "E136R", 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"I266V", "V267I", "A270T", "L273V", "G278S", "W279R", "G293A", "L303I", "L304I", "T306A", "I307L", "A310T", "A328T", "R330L"], "nef": ["G3N", "S9-", "I10-", "G12-", "P14R", "E18D", "T23S", "Q35*", "K39R", "L43I", "A53E", "A60E", "E98D", "L100I", "V114M", "F120Y", "N126C", "R151G", "N157T", "M168I", "S169N", "E174D", "K184Q", "E197D", "F202Y"], "p17": ["R9S", "G11-", "K12E", "T15A", "G49D", "S54A", "Q59R", "I61L", "Q69P", "Y79F", "E90K", "N109K", "K110E", "A119T", "K122G", "K124N"], "p2": ["T10N", "N11A", "-12H"], "p24": ["S33N", "V36I", "V86A", "H87Q", "M96I", "A116T", "D187E"], "p6": ["I12M", "R16K", "L38S", "K42R"], "p7": ["I12T", "V13I", "I24L", "T50N"], "pro": ["G16E", "I19T", "L63S", "M89L"], "rev": ["S8N", "Q14R", "I21L", "Y28H", "K30H", "Q36R", "A37H", "N40S", "A47S", "I52L", "H53D", "S54A", "E57K", "I59N", "T62A", "P67H", "A68P", "P70H", "P72S", "Q74H", "R80G", "L81R", "D84G", "C85D", "S88D", "T91G", "T94A", "G96E", "V97*", "G104W", "S106P", "S112F", "A114V", "K115E"], "tat": 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L137I, R138H, D139G, K140V, K141M, K142I, K143G, A146C, L147K, Y149V, R150C, I153M, V154M, L156I, N159G, S160T, -161T, -162R, N169R, T170S, A172V, V173S, T174K, A176T, P178L, K179M, D183A, Y195F, L198I, N202D, T208V, E241G, I243V, T250K, T255I, N261K, E262N, S263P, E265K, N272S, K277R, S278N, R280G, Y290F, T292P, D294T, Q300R, H302Y, N304T, S306R, K316E, S318T, K320E, K322L, P326R, -328S, K329S, N372S, R404Q, Y407S, A412Q, K418E, -433T, T437E, I463V, K464N, P470R, E479Q; gp41: S35F, R46K, E110D, D113H, Q119E, D129G, D137E, N140T, A151E, D156E, N157Y, N163Y, I164F, W169R, K172M, I173L, V178I, V190E, L191I, V194T, R196K, V197I, R198M, P203T, L204I, N212T, R218G, L219I, G220V, I222V, G226D, E228D, D232S, R233S, S234W, I235M, F241I, L249I, R250L, L252M, S256I, F263V, I266V, V267I, A270T, L273V, G278S, W279R, G293A, L303I, L304I, T306A, I307L, A310T, A328T, R330L; nef: G3N, S9-, I10-, G12-, P14R, E18D, T23S, Q35*, K39R, L43I, A53E, A60E, E98D, L100I, V114M, F120Y, N126C, R151G, N157T, 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["S107T", "D113E", "D121E", "T165S", "G220E", "N239S", "A267V"], "nef": ["S45T", "A49P", "L198K"], "p2": ["N8G", "-11A"], "p7": ["K10R"], "tat": ["S70P", "E85K"], "vif": ["K36D", "D78E"], "vpr": ["A59V"], "vpu": ["-3N", "-5L", "-6G"]}, "labels": {"aa": "RT-p51: A36E; RT-p66: A36E, K527N; gp120: N1S, V2G, G4E, A172T, N212T, K312E, Q315G, S318K, K322E, P335Q, R351G, M406I, R448K; gp41: S107T, D113E, D121E, T165S, G220E, N239S, A267V; nef: S45T, A49P, L198K; p2: N8G, -11A; p7: K10R; tat: S70P, E85K; vif: K36D, D78E; vpr: A59V; vpu: -3N, -5L, -6G"}}, "children": [{"name": "KY658710", "node_attrs": {"div": 0.12433999999999999, "accession": "KY658710", "clade_membership": {"value": "C"}, "country": {"value": "BW"}, "date": {"value": 1996.0}, "Strain_name": {"value": "DEMC96BW007"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T45C", "A46T", "T47C", "G99A", "T100A", "G102A", "T103A", "G104A", "T105A", "G106A", "T107A", "G108A", "C109A", "C152A", "T155C", "T156G", 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"C4146A", "G4219A", "C4396T", "T4412C", "A4567G", "C4569T", "T4606G", "G4642A", "A4650C", "G4664A", "G4684A", "G4687A", "A4775G", "A4782G", "A4786T", "T4800C", "T4868C", "T4907C", "A4950C", "A5051G", "T5062G", "A5093G", "G5137A", "A5248T", "A5269G", "T5275C", "A5282C", "T5286C", "C5303T", "C5404T", "C5412T", "C5435T", "T5451C", "T5457C", "C5461G", "A5462C", "T5466C", "A5467T", "A5575G", "A5576C", "C5579T", "A5581G", "T5599C", "-5600C", "-5601A", "-5602A", "T5621-", "A5622-", "A5623-", "G5624-", "A5625-", "-5626T", "G5647A", "C5653T", "T5684C", "A5689C", "T5704C", "G5707T", "A5712G", "A5715G", "G5717A", "A5718G", "A5720G", "T5728A", "A5733G", "A5737G", "C5756A", "A5788G", "-5790T", "A5793G", "A5797C", "-5799A", "-5800T", "-5801C", "-5802T", "-5804C", "-5805A", "-5807T", "T5843C", "A5845G", "A5849G", "G5858-", "G5860-", "G5861A", "T5862G", "G5863A", "A5866G", "A5881T", "T5887C", "A6020T", "G6028A", "A6030G", "C6110G", "A6142G", "T6163C", "T6166C", "-6171A", "-6175T", "C6183A", "-6186C", "T6193C", "-6198A", "-6210A", "-6211A", "-6215A", "-6216T", "-6217G", "-6218G", "-6219A", "-6221A", "-6223A", "G6224-", "G6227-", "A6228-", "A6229-", "A6230-", "T6252C", "A6263T", "G6267A", "G6269A", "A6281C", "T6328G", "A6329G", "-6331G", "-6333A", "A6335G", "T6337A", "C6403T", "G6526A", "G6532A", "G6577A", "C6599A", "G6601A", "C6612T", "A6628G", "G6647A", "T6745C", "A6777C", "G6779A", "A6781C", "A6801G", "-6830C", "-6831C", "-6832C", "A6836-", "A6837-", "T6838-", "A6840G", "T6853C", "A6855G", "C6857G", "-6953T", "-6956A", "-6957A", "-6959A", "-6960G", "-6961T", "-6962A", "-6963C", "-6964A", "-6965T", "-6966A", "-6967C", "-6968A", "-6969T", "-6970G", "-6971C", "-6972C", "-6973T", "-6974T", "-6975C", "-6976T", "-6979T", "-6980A", "-6981C", "-6982A", "-6983A", "-6984C", "-6991T", "-6995G", "-6997G", "-7000T", "-7003T", "-7004T", "-7005C", "-7006A", "-7008A", "C7018T", "A7033G", "T7047G", "A7074T", "A7123G", "C7124A", "A7133G", "C7134T", "A7147C", "T7150C", "-7152C", "A7154T", "A7157G", "T7159A", "-7162C", "A7177G", "G7190A", "G7198A", "A7252G", "G7270A", "G7339A", "G7366A", "G7477A", "G7492A", "C7499A", "C7510G", "A7517C", "A7531G", "A7533G", "G7589A", "C7590A", "C7625G", "G7628A", "T7666G", "A7676G", "G7677A", "A7713T", "A7733C", "A7744G", "T7747C", "A7769G", "A7770C", "G7790A", "G7846A", "T7913C", "A7938G", "T7959C", "A8099G", "T8101G", "G8111A", "T8122A", "G8134C", "G8135A", "T8138C", "G8139T", "G8140C", "G8141A", "A8142G", "A8143G", "C8145G", "C8146A", "T8149A", "A8150C", "T8205C", "T8264C", "T8265C", "G8349A", "G8354T", "C8406A", "C8445A", "A8446G", "T8456G", "A8474C", "C8477T", "G8499C", "C8510A", "C8514T", "A8534G", "A8537T", "T8558C", "A8564G", "T8582C", "C8590G", "A8636T", "C8688A", "T8711C", "A8718T", "A8719G", "T8747C", "G8795A", "A8798G", "G8807A", "T8831C", "A8837G", "G8852A", "G8861A", "A8869C", "A8892C", "T8903C", "A8904T", "G8905C", "A8922C", "T8947A", "G9007T", "A9009G", "G9015A", "G9016C", "T9017C", "G9030T", "T9115C", "T9130C", "A9131T", "T9132C", "T9181C"], "INT": ["E25D", "A124N", "A265V"], "RT-p51": ["D123S", "D250E", "L283I", "A286V", "P294T", "M357I", "K366R", "M377Q", "S379C", "T400A", "A437V"], "RT-p66": ["D123S", "D250E", "L283I", "A286V", "P294T", "M357I", "K366R", "M377Q", "S379C", "T400A", "A437V", "L452M", "V466I", "S554K"], "gp120": ["G2R", "V3-", "M56L", "E59G", "Q86E", "-105R", "-106N", "-107G", "-109A", "-111Y", "-112N", "E125-", "I126-", "R138K", "D139N", "K142Q", "K143Q", "N160P", "-161N", "S162K", "L249I", "A253V", "E265K", "-308T", "K309N", "-328R", "K329-", "K332E", "N334R", "Q335E", "-368N", "N369S", "-370T", "T371Y", "-372M", "-373P", "-374S", "-375N", "-376T", "-378N", "-379N", "-380T", "-383N", "-384S", "-385N", "M398R", "Y407F", "L424I", "T427V", "-433T", "N434S", "N435E", "T437K", "D446N"], "gp41": ["Q66K", "I72L", "K77R", "A96N", "Q108E", "D109N", "S125D", "D137V", "K144Q", "N156A", "D163N", "N212S", "L219P", "I266V", "A270T", "R277S", "G278S", "W279L", "E280R", "A281G", "K283Q", "I301T", "V321P"], "nef": ["G3S", "K4N", "Q35R", "D38E", "A53P", "E65G", "A83G", "E98D", "H116N", "Y120F", "N126C", "M173I", "E176A", "K184Q", "M194L"], "p17": ["L31M", "S54A", "I61M", "T115A"], "p2": ["Q6H", "-12G"], "p24": ["T210S"], "p6": ["T8S", "-35P", "T39A"], "p7": ["S4G", "R11K", "V13P"], "pro": ["E35D", "L63V", "I72V", "T74S"], "rev": ["I21L", "D84G", "C85G", "S88N", "S92T", "G96Q", "V97S", "G98Q", "S99G", "P100T", "*101T"], "tat": ["P10S", "T20I", "H29A", "S31C", "N67A", "I69V", "T77A", "S84P"], "vif": ["V7G", "R19K", "N22H", "R33K", "R34K", "I66V", "K67I", "K122Q", "I159R", "R184K"], "vpr": ["E48D", "I60L", "I61T"], "vpu": ["-2L", "-7V", "A8G", "V14I", "V26A", "I28L", "V34L", "R37K", "K38R", "W41R", "K44E", "A50E", "T61V", "V79A", "N80D", "D81G"]}, "labels": {"aa": "INT: E25D, A124N, A265V; RT-p51: D123S, D250E, L283I, A286V, P294T, M357I, K366R, M377Q, S379C, T400A, A437V; RT-p66: D123S, D250E, L283I, A286V, P294T, M357I, K366R, M377Q, S379C, T400A, A437V, L452M, V466I, S554K; gp120: G2R, V3-, M56L, E59G, Q86E, -105R, -106N, -107G, -109A, -111Y, -112N, E125-, I126-, R138K, D139N, K142Q, K143Q, N160P, -161N, S162K, L249I, A253V, E265K, -308T, K309N, -328R, K329-, K332E, N334R, Q335E, -368N, N369S, -370T, T371Y, -372M, -373P, -374S, -375N, -376T, -378N, -379N, -380T, -383N, -384S, -385N, M398R, Y407F, L424I, T427V, -433T, N434S, N435E, T437K, D446N; gp41: Q66K, I72L, K77R, A96N, Q108E, D109N, S125D, D137V, K144Q, N156A, D163N, N212S, L219P, I266V, A270T, R277S, G278S, W279L, E280R, A281G, K283Q, I301T, V321P; nef: G3S, K4N, Q35R, D38E, A53P, E65G, A83G, E98D, H116N, Y120F, N126C, M173I, E176A, K184Q, M194L; p17: L31M, S54A, I61M, T115A; p2: Q6H, -12G; p24: T210S; p6: T8S, -35P, T39A; p7: S4G, R11K, V13P; pro: E35D, L63V, I72V, T74S; rev: I21L, D84G, C85G, S88N, S92T, G96Q, V97S, G98Q, S99G, P100T, *101T; tat: P10S, T20I, H29A, S31C, N67A, I69V, T77A, S84P; vif: V7G, R19K, N22H, R33K, R34K, I66V, K67I, K122Q, I159R, R184K; vpr: E48D, I60L, I61T; vpu: -2L, -7V, A8G, V14I, V26A, I28L, V34L, R37K, K38R, W41R, K44E, A50E, T61V, V79A, N80D, D81G"}}}, {"name": "KC156219", "node_attrs": {"div": 0.13186, "accession": "KC156219", "clade_membership": {"value": "C"}, "country": {"value": "MW"}, "date": {"value": 2008.0}, "Strain_name": {"value": "702010440_CH440.w4"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C30T", "A50-", "T95C", "C96T", "C152T", "T163C", "T303A", "C365G", "C379A", "A388G", "G395A", "A431G", "G463A", "A530C", "C558T", "T560G", "A581G", "C590T", "G603A", "A604G", "A605T", "G608C", "G690C", "T695G", "A697C", "C698T", "A699G", "A701T", "C747G", "G771C", "A785G", "C827T", "C876T", "G906A", "G908A", "A1089G", "T1121C", "G1142A", "C1209T", "T1271A", "A1349G", "A1364G", "G1388A", "C1439T", "A1450G", "-1458A", "-1459A", "T1501C", "C1514T", "C1517T", "T1547C", "G1552A", "G1568A", "A1580G", "A1588G", "T1628C", "G1673A", "T1681C", "A1686C", "A1715G", "-1729T", "-1730C", "-1731G", "-1732A", "-1733G", "T1735-", "C1736-", "G1740A", "A1741C", "G1742A", "A1745-", "A1746-", "C1747-", "C1748-", "C1749-", "C1750-", "C1751-", "G1752-", "C1753-", "T1754-", "C1755-", "C1756-", "C1767A", "C1768T", "T1832A", "G1852A", "T1864A", "A1904T", "A1906G", "G1972A", "T1978A", "C1979G", "A2023C", "A2029G", "T2035C", "C2047T", "A2059G", "C2083T", "A2114G", "T2124C", "T2171C", "G2221A", "A2230G", "A2237T", "T2245C", "C2281T", "G2293A", "C2335T", "A2362G", "A2368G", "T2440C", "T2458C", "G2459A", "A2461G", "G2463A", "C2464A", "A2500T", "T2542G", "A2560G", "A2627T", "A2629G", "C2694G", "G2704A", "G2707A", "G2714A", "A2726G", "A2727C", "T2737C", "T2800C", "G2833A", "A2836G", "G2869A", "A2884G", "A2920G", "A2950G", "C2953T", "A2962G", "G2972A", "C3055T", "A3070G", "A3079G", "G3094T", "A3103G", "G3154A", "C3274T", "A3280G", "A3370G", "G3379A", "G3385A", "C3394T", "G3401A", "A3442T", "A3449T", "T3469C", "A3478G", "A3491G", "C3500A", "A3524G", "A3529G", "G3556A", "T3566C", "C3589T", "G3595A", "C3610T", "T3613C", "G3643A", "A3664G", "G3679A", "G3686A", "A3703G", "A3715G", "A3768G", "G3808T", "A3817G", "G3850A", "G3859A", "T3909A", "A3919G", "T3977C", "A3988G", "A4063G", "C4079T", "A4102T", "A4183G", "C4210T", "G4366A", "A4369G", "C4381T", "A4407G", "A4418C", "T4444C", "A4459G", "A4495G", "T4537C", "T4652C", "C4724T", "G4737A", "C4757T", "T4799G", "A4805T", "G4859A", "A4949G", "A4951G", "T4959C", "A4964G", "T4967C", "A4974G", "T4975C", "A4994G", "G5045A", "T5062C", "A5090G", "A5159G", "G5176A", "A5225G", "G5226A", "T5237C", "C5251A", "A5278G", "A5287T", "T5293A", "T5311C", "G5330A", "G5336C", "T5415G", "G5427A", "G5437C", "G5448C", "T5475C", "T5612A", "A5613T", "A5619T", "-5620C", "A5623G", "-5626G", "G5630C", "G5636C", "A5644G", "C5658T", "A5668G", "C5678G", "C5727T", "G5730C", "G5748A", "T5789C", "G5791T", "A5792G", "A5795G", "-5799T", "-5800G", "-5801T", "-5802C", "-5804A", "-5805C", "-5807A", "G5808T", "-5811G", "T5817C", "-5859G", "G5902A", "C5924T", "T5944C", "G5956T", "A6030C", "T6046C", "T6109C", "-6171C", "-6175C", "-6186T", "T6187C", "A6188C", "C6189T", "A6194-", "A6195-", "T6196-", "A6197-", "T6199-", "-6205G", "-6206A", "-6207A", "-6210T", "-6211G", "-6215C", "-6216C", "-6217A", "-6219T", "-6221T", "-6223T", "-6225G", "-6226A", "A6230G", "G6251A", "A6253G", "C6278A", "A6281G", "A6282G", "G6303A", "C6320A", "T6328C", "A6329-", "A6330-", "A6332-", "T6334-", "T6337C", "A6339C", "T6399G", "T6400G", "C6496T", "T6523A", "A6529T", "T6559C", "C6563A", "G6611A", "T6634C", "G6638A", "G6647T", "A6648G", "A6649G", "G6653A", "T6654A", "G6655T", "A6691G", "G6743A", "C6758T", "A6765G", "A6774G", "A6776C", "T6778G", "T6787A", "A6806C", "A6809G", "A6810G", "C6829T", "T6835G", "C6843G", "A6844T", "A6849T", "A6850T", "A6856T", "T6883C", "A6907G", "A6926T", "A6935G", "A6947G", "G6948A", "T6949G", "-6953G", "T6958-", "-6979A", "-6980C", "-6981T", "-6982G", "-6983C", "-6984T", "-6991G", "-6995A", "-6997A", "-7000G", "-7003A", "-7004G", "-7005A", "-7006C", "-7008C", "C7014T", "A7056G", "C7089A", "C7096T", "C7124T", "A7147T", "A7151G", "-7152G", "A7161G", "-7162A", "A7163G", "C7201T", "A7244C", "G7281A", "G7307-", "T7308-", "G7309-", "G7311C", "A7342G", "G7390A", "T7516C", "T7604A", "C7605A", "T7630G", "G7631C", "C7651T", "T7666A", "G7668A", "T7678C", "A7689G", "C7692T", "A7700G", "A7720G", "A7734T", "A7742C", "T7747G", "C7775T", "A7782G", "C7805T", "A7818G", "A7832G", "T7852C", "T7876A", "G7915A", "C7951A", "G7997A", "A8029G", "G8030T", "A8032G", "C8044A", "C8048T", "C8051A", "G8055A", "C8062T", "C8146T", "A8191G", "C8220T", "T8264G", "C8291T", "T8369C", "A8441G", "C8460T", "C8483T", "G8490A", "G8516A", "G8517C", "G8562T", "T8595G", "C8597A", "C8651T", "T8701A", "G8739A", "T8740C", "A8746T", "G8814A", "A8851T", "A8870T", "G8871T", "A8872G", "G8875A", "A8882G", "G8924A", "C9012A", "A9042G", "A9135-", "T9180C"], "INT": ["E11D", "L45Q", "K211R", "K215Q"], "RT-p51": ["T7A", "V10A", "T48S", "E122K", "D123E", "I178L", "A200G", "E207K", "K211A", "V293I", "G436R"], "RT-p66": ["T7A", "V10A", "T48S", "E122K", "D123E", "I178L", "A200G", "E207K", "K211A", "V293I", "G436R", "E449D", "L469I", "T477A", "S491P", "V531I", "K558R"], "gp120": ["E34D", "E59A", "T104S", "-105N", "-106T", "-107I", "-109G", "-111V", "-112L", "N113Y", "-124G", "I126V", "A133M", "L137I", "K143G", "R150K", "L156I", "N159S", "N160T", "S162-", "F182W", "L237I", "A253T", "E262K", "E265W", "V267N", "I279M", "D294A", "D297N", "H302Y", "N304S", "K307R", "-308Q", "K309E", "N311K", "R316K", "K318Q", "K319G", "P326K", "T330S", "K332V", "N358Y", "K361E", "S365E", "Y367D", "-368K", "-370S", "T387I", "E401G", "A412E", "-433G", "N434T", "N436R", "T437E", "K464Q", "R476K"], "gp41": ["V2A", "G3-", "S101N", "D109E", "E110Q", "R122K", "D129G", "T130I", "R133G", "K144I", "K147Q", "D148E", "N156K", "N160S", "K172R", "I177V", "D232N", "A243S", "D247E", "S251N", "T306I", "R330C"], "nef": ["H40Y", "A50T", "E59Q", "V74L", "F85V", "V133T", "Y135F", "E158K", "Q170L", "E176D", "D177C", "R178K", "M194I", "Y202F"], "p17": ["T15K", "K18R", "L31I", "R43K", "Q65H", "E90S", "K91N", "A119Q", "D121A", "K122D"], "p2": ["N9-", "-10S", "-12N"], "p24": ["L6V", "A14P", "P49S", "V59I", "S120G", "P160S", "D180E"], "p6": ["L1P", "S3R", "P5L", "A12E", "-18E", "-19E", "E20T", "E21T", "T22-", "T23-", "P24-", "A25-", "P26-", "P30M"], "p7": ["I12T", "R29K", "K41R"], "pro": ["S12T", "I36L", "D60E", "Q61E"], "rev": ["R50K", "S61V", "T62A", "P67L", "A68E", "P72S", "V97L", "P100S", "K115E"], "tat": ["H13Q", "A21P", "K24N", "L68P", "P81Q"], "vif": ["V51I", "Q73H", "K122R", "I130A", "I159T"], "vpr": ["T19A", "S41D", "Y45H", "Q77H"], "vpu": ["-2Y", "L4F", "-7E", "-9V", "-10A", "I13V", "I21V", "T24S", "W41C"]}, "labels": {"aa": "INT: E11D, L45Q, K211R, K215Q; RT-p51: T7A, V10A, T48S, E122K, D123E, I178L, A200G, E207K, K211A, V293I, G436R; RT-p66: T7A, V10A, T48S, E122K, D123E, I178L, A200G, E207K, K211A, V293I, G436R, E449D, L469I, T477A, S491P, V531I, K558R; gp120: E34D, E59A, T104S, -105N, -106T, -107I, -109G, -111V, -112L, N113Y, -124G, I126V, A133M, L137I, K143G, R150K, L156I, N159S, N160T, S162-, F182W, L237I, A253T, E262K, E265W, V267N, I279M, D294A, D297N, H302Y, N304S, K307R, -308Q, K309E, N311K, R316K, K318Q, K319G, P326K, T330S, K332V, N358Y, K361E, S365E, Y367D, -368K, -370S, T387I, E401G, A412E, -433G, N434T, N436R, T437E, K464Q, R476K; gp41: V2A, G3-, S101N, D109E, E110Q, R122K, D129G, T130I, R133G, K144I, K147Q, D148E, N156K, N160S, K172R, I177V, D232N, A243S, D247E, S251N, T306I, R330C; nef: H40Y, A50T, E59Q, V74L, F85V, V133T, Y135F, E158K, Q170L, E176D, D177C, R178K, M194I, Y202F; p17: T15K, K18R, L31I, R43K, Q65H, E90S, K91N, A119Q, D121A, K122D; p2: N9-, -10S, -12N; p24: L6V, A14P, P49S, V59I, S120G, P160S, D180E; p6: L1P, S3R, P5L, A12E, -18E, -19E, E20T, E21T, T22-, T23-, P24-, A25-, P26-, P30M; p7: I12T, R29K, K41R; pro: S12T, I36L, D60E, Q61E; rev: R50K, S61V, T62A, P67L, A68E, P72S, V97L, P100S, K115E; tat: H13Q, A21P, K24N, L68P, P81Q; vif: V51I, Q73H, K122R, I130A, I159T; vpr: T19A, S41D, Y45H, Q77H; vpu: -2Y, L4F, -7E, -9V, -10A, I13V, I21V, T24S, W41C"}}}]}, {"name": "C_NODE_0000020", "node_attrs": {"div": 0.08440999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A67G", "T71G", "C93G", "T94A", "A97C", "-281C", "C379A", "C419T", "T572C", "A699-", "A701-", "C749T", "C827T", "G977A", "C1453-", "A1454-", "-1458A", "A1619G", "T1873C", "A2950G", "G2980A", "A3070G", "G3556A", "T3652C", "G3667A", "T4769G", "T4967C", "G5114C", "T5171C", "T5293A", "G5958A", "T6166A", "-6200A", "-6206A", "-6226A", "T6252C", "A6475G", "G6605A", "T6745C", "A6776G", "A6806G", "T7150-", "T7156A", "A7252G", "A7402G", "T7606C", "T7630A", "C7714A", "C7751T", "T7932C", "A8113G", "T8369-", "G8517C", "A8564G", "C8651T", "T8813C", "G8814A", "C9039T", "T9180C"], "RT-p51": ["R277K"], "gp120": ["R35K", "K142Q", "D251N", "S318G"], "gp41": ["I210T"], "nef": ["E59Q", "E158K"], "p17": ["T15K", "K122E", "K124-"], "rev": ["S89G"], "tat": ["S75P"], "vif": ["D61E", "K176N"], "vpr": ["A4P"], "vpu": ["L4-", "A8-"]}, "labels": {"aa": "RT-p51: R277K; gp120: R35K, K142Q, D251N, S318G; gp41: I210T; nef: E59Q, E158K; p17: T15K, K122E, K124-; rev: S89G; tat: S75P; vif: D61E, K176N; vpr: A4P; vpu: L4-, A8-"}}, "children": [{"name": "C_NODE_0000021", "node_attrs": {"div": 0.08647999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A491G", "A606G", "T695-", "A697C", "C698T", "A774C", "G1404A", "C2353T", "G2463A", "G5086A", "A5614G", "-5620A", "-5626T", "C6160A", "-6202C", "-6952A", "-6953T", "-6954A", "-6955C", "A7268G", "A7313C"], "gp120": ["N113-", "-374N", "K472E"], "nef": ["E108D"], "p17": ["A119K"], "p24": ["I15L"]}, "labels": {"aa": "gp120: N113-, -374N, K472E; nef: E108D; p17: A119K; p24: I15L"}}, "children": [{"name": "C_NODE_0000022", "node_attrs": {"div": 0.09308999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A530T", "A604C", "C694-", "G1002A", "A1450G", "G1622A", "G1858A", "T1986C", "G2273A", "G2422A", "G2456C", "A3449C", "A3532G", "C3589T", "C4129T", "C4258T", "G4684A", "C4883A", "C5221T", "C5495A", "G5717A", "A5788T", "G5791T", "A5792C", "A5795C", "G5808-", "G5856A", "-6170G", "-6171T", "-6172T", "-6201G", "C6403T", "A6573G", "G6638C", "A6734G", "T6735A", "G6808T", "A6855C", "-6974A", "-6975C", "-6978A", "-6979A", "-6981G", "-6983T", "-6984C", "-6993C", "C7016A", "A7256G", "T7618C", "T7633G", "A7936G", "G7942A", "A8099G", "T8101G", "G8102A", "G8152A", "A8402G", "G8426A", "A8494C", "C8590G", "C8597T", "T8747C", "C8756T", "A8762G", "G8780A", "A8847T", "G8871C"], "RT-p51": ["V60I", "D121H", "Q174K"], "RT-p66": ["V60I", "D121H", "Q174K", "V466I"], "gp120": ["L137I", "E240G", "E262Q", "K312E", "N334T", "-377S", "-378N", "L388I", "I468V"], "gp41": ["R214G", "I266V", "A267T", "V321L"], "nef": ["I20M", "N51T", "A83G", "S169C", "D177H"], "p17": ["Q65H", "E90A", "K91E", "A120-", "D121-", "E122-"], "p24": ["V91I"], "pro": ["L63P"], "rev": ["K30E", "E32R", "D84G", "C85D", "V102I", "T114A"], "tat": ["T40K", "Q76R", "R78Q"], "vif": ["R33K", "D99E", "R167K"], "vpu": ["R37K"]}, "labels": {"aa": "RT-p51: V60I, D121H, Q174K; RT-p66: V60I, D121H, Q174K, V466I; gp120: L137I, E240G, E262Q, K312E, N334T, -377S, -378N, L388I, I468V; gp41: R214G, I266V, A267T, V321L; nef: I20M, N51T, A83G, S169C, D177H; p17: Q65H, E90A, K91E, A120-, D121-, E122-; p24: V91I; pro: L63P; rev: K30E, E32R, D84G, C85D, V102I, T114A; tat: T40K, Q76R, R78Q; vif: R33K, D99E, R167K; vpu: R37K"}}, "children": [{"name": "JF683770", "node_attrs": {"div": 0.15045999999999998, "accession": "JF683770", "clade_membership": {"value": "C"}, "country": {"value": "CY"}, "date": {"value": 2008.0}, "Strain_name": {"value": "CY221"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C365G", "G394A", "T396C", "A398G", "C435T", "G463A", "G468T", "C471A", "A500C", "A548G", "A563G", "A578C", "A643G", "A666G", "G667T", "T668G", "G671A", "C679T", "A680G", "A689T", "A691-", "A692-", "G693-", "G696-", "C697-", "T698-", "-699A", "-700C", "-701G", "A726G", "G738T", "G740A", "G743T", "T763G", "G771T", "G784T", "T788C", "A797C", "A803G", "G813A", "G815A", "G956T", "A995T", "G1030T", "G1044A", "G1047A", "A1079C", "A1101G", "T1103C", "C1115A", "G1126C", "A1152T", "T1183G", "C1211T", "C1220T", "C1229T", "A1242G", "C1243T", "A1256G", "A1277G", "C1292A", "G1354C", "A1404G", "G1405C", "A1433G", "-1452C", "-1453C", "-1454T", "-1455G", "A1458-", "C1460-", "A1461-", "A1476G", "A1480T", "T1482A", "A1487G", "C1492A", "A1495G", "A1500C", "T1501C", "T1520G", "A1529G", "G1532A", "G1539T", "G1543A", "C1556G", "C1557G", "C1558A", "T1559A", "A1560G", "G1568A", "G1590C", "A1595T", "C1610A", "T1611A", "A1614T", "G1619A", "T1636C", "A1643T", "A1644T", "G1649C", "C1651A", "C1658G", "A1660G", "G1661A", "G1664A", "G1667A", "T1682C", "G1690T", "A1691C", "C1692A", "A1694G", "A1712T", "-1729T", "-1730C", "-1731G", "-1732A", "-1733G", "-1734G", "T1735A", "C1736G", "A1738-", "G1739-", "G1740-", "A1741-", "G1742-", "A1743-", "A1746G", "C1767T", "G1773A", "G1779T", "A1781C", "-1782A", "-1783G", "-1784G", "-1785G", "-1786A", "-1787A", "T1796C", "G1819A", "C1873T", "G1912A", "G1972A", "T1978G", "C1979G", "A2057C", "C2107T", "C2281T", "C2326T", "G2548A", "G2612A", "C2615A", "G2704A", "T2737C", "C2828G", "A2829T", "C2890T", "T2899C", "A2923G", "A3064G", "G3070A", "C3095A", "C3100T", "A3124G", "A3145G", "G3151A", "G3169A", "A3238G", "A3247T", "G3292A", "C3319T", "G3334A", "A3367G", "G3379A", "C3380T", "T3381G", "G3398A", "C3399T", "G3431T", "T3445C", "C3449T", "T3505A", "G3643A", "C3652T", "A3670G", "A3676C", "T3712C", "A3768G", "C3773T", "T3778C", "G3791C", "G3806C", "C3826T", "T3844C", "G3850T", "G3859A", "A3862C", "C3864T", "C3873G", "A3874G", "A3875G", "A3989G", "C3995T", "A4025G", "A4027G", "T4039C", "C4044A", "T4074A", "C4079T", "A4111C", "T4198C", "A4222T", "T4247C", "A4255G", "A4369G", "C4381T", "T4412C", "T4428C", "T4435C", "T4537C", "A4555G", "G4561A", "G4582A", "G4637A", "T4640C", "A4643G", "G4677A", "G4685A", "T4694G", "G4766A", "G4774A", "T4793C", "A4806C", "T4820A", "T4840C", "A4860G", "A4883G", "G4892A", "C4898T", "T4907A", "T4975G", "C4992T", "A4993C", "A5021G", "G5134A", "A5146G", "C5182T", "A5212G", "T5275C", "A5299G", "A5305G", "C5306A", "G5308A", "T5319A", "T5355C", "G5359A", "G5382C", "G5437C", "C5461T", "A5462T", "T5466C", "G5548A", "T5568C", "C5579T", "T5599-", "-5602C", "A5613T", "T5621C", "A5644T", "C5653T", "A5655T", "C5658T", "A5659T", "A5665G", "C5678T", "T5684C", "G5706A", "G5711A", "A5712G", "T5728C", "G5729A", "G5730A", "A5733G", "A5746G", "G5781T", "T5787A", "G5794A", "-5811G", "G5848A", "A5849T", "T5851G", "T5852G", "G5860A", "A5896G", "A5911T", "A5917T", "A5918G", "A5950T", "A5958G", "C5974A", "G6022A", "G6023A", "T6024A", "T6025A", "C6067T", "T6076G", "T6109C", "A6132C", "G6133A", "A6158C", "A6160T", "A6167G", "A6173G", "-6174C", "-6175A", "-6180A", "-6186A", "C6190A", "A6192C", "A6194G", "A6195C", "-6198A", "T6199C", 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"-385T", "T387I", "E401R", "R404Q", "A408Y", "N414S", "N432I", "-433H", "N434K", "N435T", "T437S"], "gp41": ["A14V", "R46K", "H53Q", "M54L", "Q56R", "A67T", "I72L", "K77W", "L91I", "A96S", "K106R", "S107T", "Q108K", "D109E", "M115L", "R133T", "D137A", "N140I", "S154K", "D163N", "L191F", "T210A", "D232T", "S251N", "C253F", "R259Q", "T267I", "R277S", "G278S", "I301V", "A310V", "C326G", "R330Y"], "nef": ["G3S", "S8C", "I10-", "V11-", "P14A", "A15D", "T23A", "G29R", "Q35R", "D38E", "K39Q"], "p1": ["L2S", "K4N", "I5F", "W6C", "P7H", "H9Q", "K10R"], "p17": ["R20K", "R43K", "A45S", "L46I", "E55D", "K103R", "S111V", "T115M", "N131D"], "p2": ["A7V", "N8-", "N9-", "I13-"], "p24": ["V3L", "Q4H", "V11G", "A14S", "R18I", "E28K", "E75D", "R100M", "A105T", "G106R", "I124V", "D128E", "R132T", "I141L", "L151W", "T171V", "D187E", "G208A", "S225A"], "p6": ["R4I", "P5T", "T22A", "T23A", "P30S", "D32N", "E34P", "-35Y", "-36R", "S47N"], "p7": ["S4G", "N5I", "F6I", "P9H", "K10R", "I12P", "C18W", "A25S", "R26K", "P31E", "R32G", "E42Q", "D48E", "C49S", "T50S"], "pro": ["D60E", "Q61E"], "rev": ["I18T", "Y28C", "R50N", "S54K", "G89S", "T94A", "G96Q", "V97L", "*101E", "S106P", "K115E"], "tat": ["E2D", "A21P", "H29F", "A58T"], "vif": ["V31I", "R63K", "T74P", "D78E", "V85A", "R92G", "I130S", "Q136S", "R183H", "H187R"], "vpr": ["L68I", "F72Y", "R85Q", "A93P"], "vpu": ["I13L", "L16F", "I18L", "I20V", "T24I", "V26A", "R35K", "W41Q", "R47G", "E58D", "T61I", "D81I", "L82G"]}, "labels": {"aa": "INT: D6H, E11Q, E25D, P30L, A33G, K34E, I72V, I84V, P90Q, F100Y, I218T, D288N; RT-p51: A173T, Q245V, K277R, H334N, L429W, A435I; RT-p66: A173T, Q245V, H334N, L429W, A435I, A446S, K527N, K558R; gp120: E19D, K21N, T22A, K35R, M56I, V57K, D74E, K93T, N102H, T104R, -105D, -106V, -107A, -109D, -111N, -112T, -113T, -114A, -115N, -116S, -117S, -123Q, -124G, N132D, L151S, I153V, P155Q, L156I, N158-, N159-, N160-, S162-, R164V, T174K, K203N, G240R, E241D, H259Q, V264I, T269V, K277T, I279T, Y290F, N304I, S306N, K307E, -308T, K309G, Q315K, R316E, K319E, K332Q, T334A, S336H, L341I, S360T, S365N, Y367W, -368S, -370I, -385T, T387I, E401R, R404Q, A408Y, N414S, N432I, -433H, N434K, N435T, T437S; gp41: A14V, R46K, H53Q, M54L, Q56R, A67T, I72L, K77W, L91I, A96S, K106R, S107T, Q108K, D109E, M115L, R133T, D137A, N140I, S154K, D163N, L191F, T210A, D232T, S251N, C253F, R259Q, T267I, R277S, G278S, I301V, A310V, C326G, R330Y; nef: G3S, S8C, I10-, V11-, P14A, A15D, T23A, G29R, Q35R, D38E, K39Q; p1: L2S, K4N, I5F, W6C, P7H, H9Q, K10R; p17: R20K, R43K, A45S, L46I, E55D, K103R, S111V, T115M, N131D; p2: A7V, N8-, N9-, I13-; p24: V3L, Q4H, V11G, A14S, R18I, E28K, E75D, R100M, A105T, G106R, I124V, D128E, R132T, I141L, L151W, T171V, D187E, G208A, S225A; p6: R4I, P5T, T22A, T23A, P30S, D32N, E34P, -35Y, -36R, S47N; p7: S4G, N5I, F6I, P9H, K10R, I12P, C18W, A25S, R26K, P31E, R32G, E42Q, D48E, C49S, T50S; pro: D60E, Q61E; rev: I18T, Y28C, R50N, S54K, G89S, T94A, G96Q, V97L, *101E, S106P, K115E; tat: E2D, A21P, H29F, A58T; vif: V31I, R63K, T74P, D78E, V85A, R92G, I130S, Q136S, R183H, H187R; vpr: L68I, F72Y, R85Q, A93P; vpu: I13L, L16F, I18L, I20V, T24I, V26A, R35K, W41Q, R47G, E58D, T61I, D81I, L82G"}}}, {"name": "C_NODE_0000023", "node_attrs": {"div": 0.0986, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C435A", "G562A", "G614A", "G629A", "T1271G", "C1751A", "A2722G", "G2925A", "A3208T", "G3340A", "A3391T", "C3542T", "G3544T", "A3583G", "G3775A", "G3796A", "T4827C", "A5225G", "A5240G", "T5442C", "G5448A", "T5621A", "A5668G", "A5718G", "T5859G", "G5863A", "A6092G", "A6158G", "C6183G", "A6197G", "-6204T", "G6224-", "A6226-", "A6277G", "A6326G", "T6418C", "C6612T", "G6779A", "A6801G", "C6925T", "-6956A", "-6972G", "-6973T", "-6980A", "-6986A", "-6987A", "-6988C", "G7270A", "G7594A", "A7714C", "G7777A", "C8213T"], "RT-p51": ["E432D"], "RT-p66": ["R277K", "E432D", "Q483Y"], "gp120": ["V2G", "I80V", "-161S", "A253V", "P335S", "N436E"], "gp41": ["L304F"], "p17": ["L34I", "R76K"], "p24": ["D180E"], "tat": ["K24N"], "vpr": ["S41G", "I46V"], "vpu": ["-3S", "I21V"]}, "labels": {"aa": "RT-p51: E432D; RT-p66: R277K, E432D, Q483Y; gp120: V2G, I80V, -161S, A253V, P335S, N436E; gp41: L304F; p17: L34I, R76K; p24: D180E; tat: K24N; vpr: S41G, I46V; vpu: -3S, I21V"}}, "children": [{"name": "MK493079", "node_attrs": {"div": 0.15143, "accession": "MK493079", "clade_membership": {"value": "C"}, "country": {"value": "NP"}, "date": {"value": 2015.0}, "Strain_name": {"value": "NP36"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G342A", "A354G", "G367A", "A386G", "T396A", "A423C", "G425T", "C426T", "G451A", "G458A", "G463A", "T495G", "A497G", "T506C", "C525A", "C540A", "A541G", "T570C", "A578G", "A585G", "C586T", "T593C", "G603T", "A607G", "A620G", "C635T", "G667T", "A676C", "G690-", "A691-", "A692-", "G693-", "G696-", "C697A", "T698A", "-699A", "-700C", "-701A", "-705T", "-706G", "-707A", "-710C", "-711A", "-712A", "-713T", "-714G", "C773A", "A809G", "G821A", "G911A", "A1025G", "A1050T", "T1052A", "A1101G", "G1139A", "G1173A", "T1174G", "G1184A", "C1187T", "G1197A", "C1220T", "G1271A", "C1292A", "G1313A", "G1328A", "T1344C", "G1354C", "G1355A", "A1359T", "G1417A", "A1418G", "G1424A", "-1459A", "A1467G", "T1484C", "C1490T", "A1495G", "T1501C", "G1530A", "C1556T", "A1580G", "A1587C", "A1601G", "G1638A", "G1640A", "A1642G", "A1644C", "G1757A", "G1760A", "C1768A", "A1771G", "C1790T", "A1835G", "G1845C", "G1846A", "G1852C", "A1879G", "A1942G", "A2007G", "G2008A", "A2029G", "A2056C", "A2119G", "A2154G", "A2212G", "G2221A", "G2228A", "A2230G", "A2260T", "C2296T", "A2332G", "A2362G", "A2380T", "A2395G", "G2413A", "T2440C", "C2464T", "A2473G", "T2499G", "C2575T", "C2615A", "A2626C", "T2644C", "C2671T", "G2682A", "G2704A", "G2707A", "A2755C", "A2757T", "A2764G", "C2777T", "G2830T", "A2896C", "T2905A", "T2917C", "G2921A", "T2922C", "T2932C", "A2937G", "T2944C", "A2956G", "C2960T", "G2972A", "A2974T", "G3010A", "G3091A", "C3133T", "G3151A", "A3170T", "G3196A", "A3214G", "G3226A", "G3264A", "A3277G", "A3280G", "T3310C", "G3385A", "A3456G", "C3504A", "A3511C", "G3523A", "A3529G", "A3675G", "A3682C", "T3687C", "C3691T", "A3751G", "G3756A", "T3757G", "G3772A", "G3785A", "G3791A", "G3808C", "A3816G", "G3846A", "A3901G", "G3914A", "G3916A", "G3925A", "G3929A", "G3952A", "A3964G", "C3991T", "G3997A", "T4018C", "G4019A", "C4021A", "T4075C", "G4145A", "G4148A", "G4193A", "G4263A", "A4417G", "A4423T", "T4428C", "A4522G", "G4636A", "T4694G", "T4730C", "G4774A", "A4786G", "T4800C", "C4841A", "T4857C", "G4859A", "A4860G", "G4870A", "C4871T", "T4916C", "A4949G", "T5028C", "A5086G", "G5099A", "G5167T", "G5176A", "A5179G", "T5275A", "G5279A", "C5280T", "A5284G", "T5292C", "G5296A", "T5415G", "T5424C", "A5432G", "A5433T", "A5448C", "A5462G", "C5508A", "C5555A", "C5579T", "T5612G", "A5613G", "G5614A", "A5615G", "T5617A", "A5621G", "G5624T", "T5626G", "G5636C", "G5643C", "C5653A", "A5659T", "T5670A", "G5706A", "G5707A", "T5708G", "C5727T", "T5728A", "A5737G", "T5788A", "A5790T", "T5791G", "C5792A", "A5793G", "C5795A", "A5797C", "-5799A", "-5800T", "-5801C", "-5802A", "-5803A", "-5804C", "-5805A", "-5806A", "-5807T", "-5808G", "A5825G", "A5907G", "T5941G", "C5949G", "G5972A", "T5980C", "T6024A", "T6025A", "G6029A", "C6052T", "C6097T", "C6110G", "A6132G", "A6160T", "G6165C", "T6169C", "-6174A", "-6175C", "A6176G", "A6177T", "G6179A", "-6180C", "A6182G", "-6186G", "C6190A", "A6192G", "-6198G", "C6202T", "-6203A", "-6205C", "-6207G", "-6208T", "-6209A", "-6210A", "-6211T", "A6229G", "A6232G", "A6234G", "C6258G", "G6267A", "A6313G", "C6317T", "G6323A", "-6331T", "-6333G", "T6337C", "-6340C", "T6395A", "C6396A", "T6397C", "A6458G", "A6488T", "A6507T", "G6577A", "T6592A", "A6609G", "T6654A", "C6670T", "C6752G", "A6753C", "G6776A", "T6778C", "A6781G", "A6786C", "A6798T", "G6806A", "A6809G", "G6818A", "A6819G", "C6829T", "C6833-", "C6834-", "T6835-", "A6854G", "C6855G", "C6857A", "C6858A", "A6859T", "A6884G", "A6910G", "A6926G", "T6932A", "A6935C", "G6940A", "T6943C", "A6947T", "G6948T", "T6949C", "-6957A", "-6971G", "-6976A", "-6977G", "A6979C", "G6981T", "-6982G", "-6985T", "-6989A", "-6990G", "-6991T", "-6992A", "-6994A", "-6995G", "-6996G", "-6997A", "-6998G", "-6999G", "-7000A", "-7001A", "-7002A", "-7003T", "-7004C", "-7005C", "-7006A", "-7008T", "-7009C", "A7021G", "A7033G", "A7056G", "C7078T", "A7112G", "C7124T", "A7144-", "G7145-", "G7146-", "A7147-", "A7148-", "A7149-", "-7152G", "-7153C", "A7156C", "-7162A", "C7164T", "G7168A", "T7192C", "A7231G", "T7337C", "A7375G", "A7376G", "T7386G", "G7391A", "T7403C", "G7441A", "T7462C", "A7517T", "A7531T", "A7532C", "G7552A", "T7555G", "A7577G", "C7590A", "T7597A", "C7603T", "T7604A", "C7606T", "G7608A", "A7617G", "C7625G", "G7628A", "A7629C", "A7641G", "T7642C", "C7651T", "G7660A", "C7690A", "C7699T", "G7702T", "A7732C", "A7733C", "A7734G", "T7747G", "A7782G", "A7796T", "T7852G", "T7921C", "A7943G", "C7950T", "G7997A", "A8011C", "G8019A", "A8023G", "A8032T", "G8055A", "C8092A", "A8093C", "C8112T", "C8131G", "G8159A", "G8160A", "T8184A", "A8195C", "A8204G", "A8219G", "G8261T", "A8263C", "A8266C", "G8267A", "A8284G", "C8290T", "G8292T", "G8317A", "A8337T", "G8348A", "A8363G", "G8365-", "C8366-", "A8367-", "G8368-", "A8372G", "T8374C", "C8382T", "G8385A", "A8399G", "A8408C", "A8413C", "G8414T", "C8419G", "C8437G", "A8438G", "G8439-", "C8440-", "A8441-", "C8443A", "G8448A", "T8451C", "T8456C", "A8458G", "T8462G", "C8469A", "T8470C", "T8471A", "G8476C", "C8489A", "C8492T", "T8495C", "C8517G", "G8520A", "A8533C", "C8543G", "G8561A", "G8564A", "A8584T", "A8652G", "G8654A", "G8660A", "C8661A", "C8666G", "C8699A"], "INT": ["G4R", "D6N", "E11D", "K14R", "S24N", "G47R", "M50I", "G52R", "G82R", "A124T", "A125T", "G140R", "G163E", "Q216H", "I218T"], "RT-p51": ["K20R", "G45R", "I135R", "E177D", "G196E", "K220N", "H221L", "L228F", "Q245H", "V276T", "K281R", "V293I", "T359S", "M377I", "R390K"], "RT-p66": ["K20R", "G45R", "I135R", "E177D", "G196E", "K220N", "H221L", "L228F", "Q245H", "V276T", "K281R", "V293I", "T359S", "M377I", "R390K", "K454R", "T470N", "K527R", "E529D", "V531A", "S554K"], "gp120": ["K18R", "D29E", "A32G", "V40I", "V57E", "E59K", "Q86E", "K93R", "N102D", "-109V", "T110N", "-111V", "-112T", "-113G", "-114S", "-115T", "-116S", "-117N", "-118G", "-119S", "-120I", "-121S", "-122N", "I126M", "K127R", "T135R", "R138K", "I153M", "P155S", "D157-", "N159D", "S181N", "N202D", "N212Y", "Q218L", "N252S", "V267E", "D294E", "Q300A", "-308N", "N311T", "E312K", "Q315L", "G318S", "K319E", "K322R", "P326-", "N327-", "-328N", "T334G", "S335N", "T344A", "N358D", "S360T", "K361Q", "S365F", "-368N", "N369G", "T371-", "N374T", "-375D", "-376M", "-379S", "-380T", "-381G", "-382G", "-383N", "-384P", "-385I", "E401G", "N420D", "G431-", "N432-", "T437I"], "gp41": ["I4L", "I24M", "T25A", "V28G", "A30T", "I72L", "K77Q", "I84M", "I92V", "A96D", "S101T", "S102N", "N105S", "Q108E", "D109T", "D113G", "D129E", "R133S", "E143D", "K144R", "D148E", "N156K", "N160S", "T165S", "P216L", "D232N", "S251N", "F263L", "I264L", "A270V", "G286K", "L294Q", "K298Q", "I301V", "T306A", "E320Y", "L321F", "V322I", "R330L", "Q345L"], "nef": ["S8M", "S9A", "I10-", "V11-", "P14S", "A15T", "E24A", "A26G", "E28D", "G29R", "V30Q", "A33T", "Q35N", "L37R", "D38Q", "K39-", "H40-", "L43T", "S46-", "Q59E", "A60T", "E64A", "Y81F", "K104E", "Q107K", "D108E", "Y120F"], "p1": ["G3R", "K4R", "I5L"], "p17": ["A3T", "I7V", "G11E", "L21I", "M30L", "R39K", "R43K", "S54A", "L64I", "Q69R", "Y79H", "T84V", "A90S", "E91G", "S111I", "K114T", "K119-", "-126K"], "p2": ["N9S", "-10N"], "p24": ["T107S", "I124V", "V148S", "G156R", "D187E", "G208A", "T210S", "R229K"], "p6": ["P30Q", "K31R"], "p7": ["M1V", "K10R", "I12T", "G22R", "K41Q"], "pro": ["I13V", "G16A", "Q18H", "K70R"], "rev": ["Q14K", "R50K", "I55L", "I59V", "T62S", "H82T", "Q95E", "G104E", "K116T"], "tat": ["H13Q", "K19S", "H29R", "P60Q", "P81S"], "vif": ["R17K", "R63K", "K67R", "R92G", "S95N", "K167R"], "vpr": ["E21D", "A59I", "I60M", "I63T"], "vpu": ["-2W", "-4E", "-5I", "-6R", "-7V", "-8A", "L12F", "L16I", "I18L", "V34R", "W41R", "K44E", "T61I", "H73R"]}, "labels": {"aa": "INT: G4R, D6N, E11D, K14R, S24N, G47R, M50I, G52R, G82R, A124T, A125T, G140R, G163E, Q216H, I218T; RT-p51: K20R, G45R, I135R, E177D, G196E, K220N, H221L, L228F, Q245H, V276T, K281R, V293I, T359S, M377I, R390K; RT-p66: K20R, G45R, I135R, E177D, G196E, K220N, H221L, L228F, Q245H, V276T, K281R, V293I, T359S, M377I, R390K, K454R, T470N, K527R, E529D, V531A, S554K; gp120: K18R, D29E, A32G, V40I, V57E, E59K, Q86E, K93R, N102D, -109V, T110N, -111V, -112T, -113G, -114S, -115T, -116S, -117N, -118G, -119S, -120I, -121S, -122N, I126M, K127R, T135R, R138K, I153M, P155S, D157-, N159D, S181N, N202D, N212Y, Q218L, N252S, V267E, D294E, Q300A, -308N, N311T, E312K, Q315L, G318S, K319E, K322R, P326-, N327-, -328N, T334G, S335N, T344A, N358D, S360T, K361Q, S365F, -368N, N369G, T371-, N374T, -375D, -376M, -379S, -380T, -381G, -382G, -383N, -384P, -385I, E401G, N420D, G431-, N432-, T437I; gp41: I4L, I24M, T25A, V28G, A30T, I72L, K77Q, I84M, I92V, A96D, S101T, S102N, N105S, Q108E, D109T, D113G, D129E, R133S, E143D, K144R, D148E, N156K, N160S, T165S, P216L, D232N, S251N, F263L, I264L, A270V, G286K, L294Q, K298Q, I301V, T306A, E320Y, L321F, V322I, R330L, Q345L; nef: S8M, S9A, I10-, V11-, P14S, A15T, E24A, A26G, E28D, G29R, V30Q, A33T, Q35N, L37R, D38Q, K39-, H40-, L43T, S46-, Q59E, A60T, E64A, Y81F, K104E, Q107K, D108E, Y120F; p1: G3R, K4R, I5L; p17: A3T, I7V, G11E, L21I, M30L, R39K, R43K, S54A, L64I, Q69R, Y79H, T84V, A90S, E91G, S111I, K114T, K119-, -126K; p2: N9S, -10N; p24: T107S, I124V, V148S, G156R, D187E, G208A, T210S, R229K; p6: P30Q, K31R; p7: M1V, K10R, I12T, G22R, K41Q; pro: I13V, G16A, Q18H, K70R; rev: Q14K, R50K, I55L, I59V, T62S, H82T, Q95E, G104E, K116T; tat: H13Q, K19S, H29R, P60Q, P81S; vif: R17K, R63K, K67R, R92G, S95N, K167R; vpr: E21D, A59I, I60M, I63T; vpu: -2W, -4E, -5I, -6R, -7V, -8A, L12F, L16I, I18L, V34R, W41R, K44E, T61I, H73R"}}}, {"name": "C_NODE_0000024", "node_attrs": {"div": 0.10381, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A518G", "C1175T", "G1568A", "G1972A", "T2035C", "A2212T", "A2611G", "C3266T", "A3817G", "G3850C", "A3899C", "T4474C", "G4664A", "G4769T", "T5043C", "G5045A", "A5603-", "A5620G", "A5622T", "T5787A", "G5794A", "-5811G", "T5862G", "-6174G", "T6328G", "A6819C", "C6857T", "A6936G", "A6937C", "A7133G", "A7269C", "A8032G", "G8098A", "-8369C", "-8370A", "C8488A", "G8490A"], "INT": ["E25D", "K42Q"], "RT-p51": ["E39D"], "RT-p66": ["E39D"], "gp120": ["V3G", "N102E", "N158E", "K322A", "K361G", "-375S", "-376S", "E472A"], "gp41": ["N239S"], "nef": ["A49D", "A50T", "Q59R"], "p17": ["I61M"], "rev": ["T62A", "G84S"], "vif": ["E61D"], "vpu": ["-2I", "-4L", "-5D", "-6Y", "-7R", "-8L", "-9G", "-10V"]}, "labels": {"aa": "INT: E25D, K42Q; RT-p51: E39D; RT-p66: E39D; gp120: V3G, N102E, N158E, K322A, K361G, -375S, -376S, E472A; gp41: N239S; nef: A49D, A50T, Q59R; p17: I61M; rev: T62A, G84S; vif: E61D; vpu: -2I, -4L, -5D, -6Y, -7R, -8L, -9G, -10V"}}, "children": [{"name": "MF373176", "node_attrs": {"div": 0.14740999999999999, "accession": "MF373176", "clade_membership": {"value": "C"}, "country": {"value": "SE"}, "date": {"value": 2012.0}, "Strain_name": {"value": "073NP"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G366A", "G367A", "A368G", "A374G", "A388G", "A412G", "A418G", "T424G", "A461G", "A549T", "G554A", "A563G", "C590T", "G619A", "A656G", "A676G", "G690C", "-694A", "-695G", "G702-", "G703-", "A704-", "-705G", "-706A", "-707T", "-708A", "-709G", "-710G", "-711A", "-712G", "-713A", "-714G", "A730T", "A735C", "C774A", "T782C", "G791A", "T858C", "G1019A", "G1067A", "A1088G", "G1090A", "C1115A", "G1142T", "A1192G", "T1335C", "A1349G", "T1358C", "G1443A", "-1459C", "A1464C", "G1552A", "C1598T", "A1601G", "C1679T", "T1682C", "G1687A", "C1756T", "G1763A", "G1766A", "G1819A", "G1841A", "C1849T", "C1867T", "A1904T", "A1907G", "A1920G", "A2002G", "T2101C", "G2117A", "A2161G", "A2170T", "A2227G", "C2281T", "G2293A", "C2296T", "A2397G", "A2398G", "C2456T", "T2476C", "A2592G", "G2612A", "T2654C", "A2677G", "T2689C", "G2714A", "A2715G", "C2720T", "A2727G", "A2734G", "A2755G", "G2761A", "C2770T", "C2831T", "G2833A", "T2845G", "T2873C", "G2878A", "G2914A", "A2923G", "G2950A", "G2951A", "C2953T", "C2975T", "C3023T", "T3045C", "T3049C", "C3067T", "C3129A", "T3132A", "C3133T", "G3154A", "A3170G", "G3188A", "G3226A", "A3280G", "C3352T", "G3385A", "G3398A", "C3399T", "C3449A", "G3532A", "A3543C", "T3566C", "A3619G", "G3631A", "C3649T", "A3674G", "A3675G", "G3680A", "A3682G", "A3724C", "G3737A", "T3754C", "G3756A", "A3804C", "A3816G", "G3825A", "G3859A", "A3910G", "T3943C", "A3982G", "C3994T", "C4021T", "A4060G", "C4079T", "C4105T", "A4182G", "G4285A", "A4376G", "A4433C", "T4534C", "C4543T", "G4549A", "A4570T", "A4577C", "A4581G", "T4652C", "G4687A", "T4701G", "A4721C", "A4784C", "T4793C", "T4799G", "G4802A", "A4817G", "C4827T", "T4857A", "A4863G", "G4870A", "C4943A", "A4949G", "C4988A", "T5006C", "C5038T", "A5051G", "A5055G", "T5062G", "G5082A", "C5114G", "A5122G", "C5125T", "G5131A", "G5134A", "A5143G", "A5198C", "T5228C", "C5250A", "T5313C", "G5336A", "T5354C", "G5403A", "T5424C", "A5447C", "T5452C", "C5461A", "A5462T", "C5472T", "C5487T", "C5513A", "A5545C", "C5547A", "G5548C", "A5556G", "T5584C", "T5599-", "-5600T", "-5601C", "-5602T", "-5603T", "T5616G", "T5617A", "A5625G", "G5643A", "G5673A", "T5684C", "A5685T", "G5700A", "G5706A", "A5710C", "G5711A", "G5781A", "G5784A", "C5824A", "A5825G", "A5846T", "A5849G", "G5864A", "A5866C", "C5869T", "C5884A", "A5935G", "G5956C", "C5974T", "G6023C", "T6024C", "T6034C", "A6044G", "T6046A", "G6092A", "C6097T", "C6145T", "-6175A", "-6180T", "T6184C", "-6186G", "A6191T", "T6193C", "G6197A", "-6198T", "G6201T", "-6203C", "T6204A", "-6205C", "-6207A", "-6208T", "-6209G", "-6210A", "-6211G", "-6212A", "-6213C", "-6214C", "-6215T", "-6216A", "-6217C", "-6218A", "-6219A", "-6220G", "-6221G", "-6222A", "-6223A", "G6227-", "A6228-", "A6229-", "A6232G", "A6261T", "A6263G", "A6266G", "G6267A", "A6273G", "T6287C", "-6331C", "-6333A", "T6334C", "A6335T", "G6336C", "A6339G", "-6340T", "T6424C", "G6425A", "A6458G", "G6463T", "A6488C", "C6496T", "T6511C", "A6544G", "A6628G", "G6655C", "A6684C", "A6773G", "A6777C", "A6788G", "A6809G", "A6850C", "A6935G", "A6947G", "-6957T", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964T", "-6965A", "-6966C", "-6967A", "-6968A", "-6969A", "-6970C", "-6971A", "C6975A", "-6976C", "-6977T", "A6978C", "-6982C", "-6985A", "C6993-", "A7007-", "A7016C", "A7033G", "A7037T", "A7056G", "C7089A", "A7108T", "A7113T", "C7134A", "A7147G", "A7148G", "-7150A", "-7152C", "-7153A", "A7156C", "A7158G", "G7160A", "A7161G", "-7162T", "T7170C", "C7174T", "G7199A", "T7204C", "A7224G", "A7249C", "G7268A", "C7305T", "C7313A", "G7339A", "A7348T", "T7386C", "G7441A", "C7452T", "A7456G", "C7486T", "G7492A", "A7533C", "C7561T", "A7620T", "G7633T", "G7640A", "C7658G", "G7660A", "G7670C", "T7678C", "A7689G", "C7775T", "A7782G", "C7874A", "T7877G", "G7936A", "A7943G", "C7950T", "G7995A", "G7997A", "A7998C", "A8086G", "G8113A", "A8118G", "T8155C", "G8163A", "T8209C", "G8261A", "A8262T", "A8263C", "A8273G", "C8291T", "C8366T", "G8385A", "C8386A", "A8396G", "C8406A", "G8414A", "A8426G", "G8476C", "G8508A", "C8517A", "A8518G", "A8522G", "A8534T", "A8584T", "A8636T", "A8653G", "G8660A", "C8684T", "C8688A", "T8701A", "G8729A", "G8739A", "T8740C", "T8745C", "A8746T", "T8786G", "A8816G", "T8829A", "T8832C", "T8843C", "A8844C", "G8864T", "A8870C", "G8880A", "A8885G", "A8886C", "T8903C", "A8922T"], "INT": ["E10A", "K14R", "S17N", "Q136R", "I201V", "I220L", "I268L", "K269R"], "RT-p51": ["V8I", "K101R", "H121Y", "K166R", "A173T", "K174Q", "E207R", "K211R", "D250E", "A286T", "P294S", "V317A", "P345Q", "F346Y", "T359A", "V365I", "M377I", "A435I"], "RT-p66": ["V8I", "K101R", "H121Y", "K166R", "A173T", "K174Q", "E207R", "K211R", "D250E", "A286T", "P294S", "V317A", "P345Q", "F346Y", "T359A", "V365I", "M377I", "A435I", "L452I", "Y483S", "S491P", "K527G", "E529K", "V548I", "S554N"], "gp120": ["G4S", "E34D", "V57P", "N64E", "V80I", "E102K", "C103-", "T104-", "N108-", "T110-", "I126M", "E136V", "I137V", "R138E", "K140R", "Y145H", "Y163E", "R164K", "A191T", "N202D", "K203N", "N212H", "K277T", "D294E", "K307E", "-308A", "K319E", "K332N", "S365G", "-368M", "-370G", "-372N", "-373S", "I388L", "I395F", "E401G", "A412E", "K418N", "N420I", "T427E", "N432E", "-433T", "N435S", "E436S", "I439T", "D449N", "K457R", "A472T"], "gp41": ["A1V", "V28A", "A50V", "K77T", "K106I", "D109E", "E110D", "D113N", "Q119E", "E123Q", "D129G", "N156K", "N160S", "L191I", "S192A", "P216L", "R231K", "D232T", "E272G", "S287N", "E320I", "R324G", "R330C"], "nef": ["A15N", "S45T", "A56T", "Y81F", "E98D", "K104R", "H116N", "V133T", "Y135L", "C163S", "M168L", "E174D", "E176D", "V180I", "K182Q", "M194L", "Y202F"], "p17": ["G11K", "K18R", "K26R", "H28R", "M30R", "T72S", "R95Q", "K114R", "K119-", "G123-", "-127Q", "Y132F"], "p2": ["A7-", "N8T", "-10S", "-12T", "M14L"], "p24": ["I2L", "L15I", "M96I", "S120N", "D128E", "K154R"], "p6": ["S3N", "P26L", "S47N"], "p7": ["R29K"], "pro": ["V15I", "I36L", "N37D", "K41R"], "rev": ["E10D", "A11D", "Q14R", "E30K", "R50N", "R80G", "G89S", "S103P"], "tat": ["N24T", "Y26H", "H29I", "S46Y", "S57R", "A58P", "L68P", "S70P", "R76Q", "P81S"], "vif": ["R34K", "K36N", "F39V", "E45D", "L91M", "R93G", "S95N", "D134E", "T151I", "K157E", "I159R", "V166I", "N176K", "K179R", "T180I", "G182D", "R183H", "N186S"], "vpr": ["P4A", "T49N", "I70T"], "vpu": ["I2L", "S3E", "L4I", "V26A", "R35Q", "T61S", "H73S", "N80I", "D81G"]}, "labels": {"aa": "INT: E10A, K14R, S17N, Q136R, I201V, I220L, I268L, K269R; RT-p51: V8I, K101R, H121Y, K166R, A173T, K174Q, E207R, K211R, D250E, A286T, P294S, V317A, P345Q, F346Y, T359A, V365I, M377I, A435I; RT-p66: V8I, K101R, H121Y, K166R, A173T, K174Q, E207R, K211R, D250E, A286T, P294S, V317A, P345Q, F346Y, T359A, V365I, M377I, A435I, L452I, Y483S, S491P, K527G, E529K, V548I, S554N; gp120: G4S, E34D, V57P, N64E, V80I, E102K, C103-, T104-, N108-, T110-, I126M, E136V, I137V, R138E, K140R, Y145H, Y163E, R164K, A191T, N202D, K203N, N212H, K277T, D294E, K307E, -308A, K319E, K332N, S365G, -368M, -370G, -372N, -373S, I388L, I395F, E401G, A412E, K418N, N420I, T427E, N432E, -433T, N435S, E436S, I439T, D449N, K457R, A472T; gp41: A1V, V28A, A50V, K77T, K106I, D109E, E110D, D113N, Q119E, E123Q, D129G, N156K, N160S, L191I, S192A, P216L, R231K, D232T, E272G, S287N, E320I, R324G, R330C; nef: A15N, S45T, A56T, Y81F, E98D, K104R, H116N, V133T, Y135L, C163S, M168L, E174D, E176D, V180I, K182Q, M194L, Y202F; p17: G11K, K18R, K26R, H28R, M30R, T72S, R95Q, K114R, K119-, G123-, -127Q, Y132F; p2: A7-, N8T, -10S, -12T, M14L; p24: I2L, L15I, M96I, S120N, D128E, K154R; p6: S3N, P26L, S47N; p7: R29K; pro: V15I, I36L, N37D, K41R; rev: E10D, A11D, Q14R, E30K, R50N, R80G, G89S, S103P; tat: N24T, Y26H, H29I, S46Y, S57R, A58P, L68P, S70P, R76Q, P81S; vif: R34K, K36N, F39V, E45D, L91M, R93G, S95N, D134E, T151I, K157E, I159R, V166I, N176K, K179R, T180I, G182D, R183H, N186S; vpr: P4A, T49N, I70T; vpu: I2L, S3E, L4I, V26A, R35Q, T61S, H73S, N80I, D81G"}}}, {"name": "C_NODE_0000025", "node_attrs": {"div": 0.10882, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T530A", "C672-", "-701G", "C890T", "A1089G", "A1256G", "C1316T", "A1370G", "C1491T", "G1503A", "T1854C", "G2182A", "C2968A", "T3097G", "C3405T", "C3865T", "A3866G", "A4030G", "G4186A", "G4636A", "C4841A", "A5291C", "A5293G", "-5600C", "T5611A", "G5748A", "G6179A", "-6203G", "-6331G", "T6395A", "A6682G", "T6883C", "C6988T", "-6991T", "-7001A", "-7006A", "C7134T", "-7152A", "A7155C", "A7315G", "C7585T", "G7688A", "T7876C", "A8777G", "A8814G", "A8823G", "A8844G", "G8905A"], "INT": ["I31V"], "RT-p51": ["D291E", "H334Q", "A437V"], "RT-p66": ["D291E", "H334Q", "A437V"], "gp120": ["D74E", "-109V", "S181T", "T427V"], "gp41": ["I4L", "M54L", "G214R", "R277S"], "nef": ["K158E", "N161D", "M168V"], "p17": ["H65Q"], "p2": ["N9S"], "p24": ["S120G"], "p7": ["P9S", "V13I"], "pro": ["I19T"], "rev": ["R32K"], "vif": ["R17K"], "vpr": ["I63L"]}, "labels": {"aa": "INT: I31V; RT-p51: D291E, H334Q, A437V; RT-p66: D291E, H334Q, A437V; gp120: D74E, -109V, S181T, T427V; gp41: I4L, M54L, G214R, R277S; nef: K158E, N161D, M168V; p17: H65Q; p2: N9S; p24: S120G; p7: P9S, V13I; pro: I19T; rev: R32K; vif: R17K; vpr: I63L"}}, "children": [{"name": "KU341724", "node_attrs": {"div": 0.14516, "accession": "KU341724", "clade_membership": {"value": "C"}, "country": {"value": "NP"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11NP016"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "G395A", "G407A", "C503A", "A512G", "A563G", "T570C", "G603A", "A607G", "A673-", "A674-", "A675-", "A676-", "A677-", "A678-", "C679-", "A680-", "C684G", "A685C", "G686A", "G687A", "C688A", "-694C", "-695T", "C697A", "T698C", "G771C", "C774A", "G908A", "A968G", "G1019A", "G1077A", "G1109A", "A1134G", "T1148C", "A1157G", "T1181C", "G1205A", "C1220T", "C1229T", "A1274G", "G1328A", "T1335C", "G1339A", "A1442G", "-1459C", "A1464T", "T1501C", "G1543A", "G1664A", "T1682C", "C1721T", "G1726A", "G1757A", "C1768A", "C1788G", "G1846A", "T1868C", "A1904T", "A2007G", "G2117A", "G2155A", "A2176G", "C2202A", "T2263C", "A2284T", "C2301T", "C2326T", "A2400G", "G2413A", "C2456T", "T2499G", "A2515T", "G2602A", "C2605T", "C2615A", "A2626C", "A2699G", "G2707A", "A2715C", "A2727G", "C2749T", "G2950A", "C2960T", "A2995G", "C3067A", "G3151A", "A3193G", "G3221A", "A3238G", "A3268G", "A3302T", "C3394T", "A3427G", "G3439A", "A3448G", "C3449T", "A3451G", "G3473A", "A3482C", "G3484A", "T3499C", "T3542C", "T3589C", "C3610A", "G3643A", "A3667G", "T3712C", "A3751G", "A3768G", "A3775G", "A3796G", "G3808A", "A3868G", "A3901G", "A3973C", "C4021G", "G4036A", "C4042T", 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"T8097C", "C8112G", "G8134C", "G8135A", "G8137T", "T8149C", "C8156T", "G8188A", "G8197T", "T8213C", "T8223C", "G8254A", "T8264G", "A8266G", "G8354A", "A8393G", "A8409G", "G8412C", "A8474C", "C8494G", "A8503C", "C8517A", "A8519C", "G8589A", "A8591T", "T8597A", "T8651C", "A8656G", "G8738A", "A8904C", "C8906G"], "INT": ["A91S", "A124G", "Q136K", "K156N", "V165I"], "RT-p51": ["V8I", "A36E", "T69I", "K102R", "H121Y", "I135R", "E177D", "I202V", "E207A", "K211R", "D324E", "A376T", "T403S"], "RT-p66": ["V8I", "A36E", "T69I", "K102R", "H121Y", "I135R", "E177D", "I202V", "E207A", "K211R", "D324E", "A376T", "T403S", "D460N", "Y483H", "K558R"], "gp120": ["K35R", "N52R", "E59G", "K69T", "D71Y", "H77Q", "T104S", "T110S", "-111R", "-112N", "-113V", "-114S", "-115S", "-116Y", "-117N", "-118T", "-119Y", "-120N", "-121G", "-122S", "-123V", "-124E", "A133T", "K143R", "V144M", "R150G", "D157N", "E158K", "N159K", "I173L", "N212S", "V253A", "V264I", "E265K", "K307R", "-308E", "A322S", "P326H", "T334A", "I343V", "S360T", "S365G", "-368M", "N369P", "T371-", "N374T", "S375E", "S376R", "S377P", "-379G", "-380T", "-381E", "-382S", "-383N", "-384T", "-385T", "I396V", "V402I", "K418R", "-433N", "N434T", "E436D", "I439T"], "gp41": ["R46M", "I72V", "K77Q", "D78E", "S107T", "D109S", "R122K", "S125N", "D129T", "D137E", "K144R", "I235V", "D247E", "S251N", "F263L", "L265S", "A270G", "G278S", "K298N", "F304L", "I307T", "L321V"], "nef": ["T23A", "E24Q", "T51S", "D54A", "R59N", "G83S", "F85L", "K105R", "Y120F", "S188Q", "Y202F"], "p17": ["K18R", "Y79H", "A90T", "E91G", "Q112-", "Q113-", "K114-", "T115-", "-120A", "-121D"], "p2": ["-12T", "M14L"], "p24": ["A14P", "L15I", "M96I", "A116T", "I135V", "R203K"], "p6": ["R16K", "P30Q", "-35A", "P37-"], "p7": ["I12T", "R26K"], "pro": ["I36L", "K70R"], "rev": ["E10D", "A11E", "I18T", "K20R", "H53R", "I59V", "H82N", "S88R", "G96Q", "V97L", "*101Q", "S103F", "A114T", "E117*"], "tat": ["A21V", "N24Q", "H29R", "S46Y", "S57R", "P81Q"], "vif": ["V55I", "E99D", "G101V", "I128R", "I130V", "P131H", "K167Q"], "vpr": ["Y15H", "H40Q", "Q44L", "T55A", "A89T"], "vpu": ["S3D", "L12F", "A19V", "K37R", "V79G"]}, "labels": {"aa": "INT: A91S, A124G, Q136K, K156N, V165I; RT-p51: V8I, A36E, T69I, K102R, H121Y, I135R, E177D, I202V, E207A, K211R, D324E, A376T, T403S; RT-p66: V8I, A36E, T69I, K102R, H121Y, I135R, E177D, I202V, E207A, K211R, D324E, A376T, T403S, D460N, Y483H, K558R; gp120: K35R, N52R, E59G, K69T, D71Y, H77Q, T104S, T110S, -111R, -112N, -113V, -114S, -115S, -116Y, -117N, -118T, -119Y, -120N, -121G, -122S, -123V, -124E, A133T, K143R, V144M, R150G, D157N, E158K, N159K, I173L, N212S, V253A, V264I, E265K, K307R, -308E, A322S, P326H, T334A, I343V, S360T, S365G, -368M, N369P, T371-, N374T, S375E, S376R, S377P, -379G, -380T, -381E, -382S, -383N, -384T, -385T, I396V, V402I, K418R, -433N, N434T, E436D, I439T; gp41: R46M, I72V, K77Q, D78E, S107T, D109S, R122K, S125N, D129T, D137E, K144R, I235V, D247E, S251N, F263L, L265S, A270G, G278S, K298N, F304L, I307T, L321V; nef: T23A, E24Q, T51S, D54A, R59N, G83S, F85L, K105R, Y120F, S188Q, Y202F; p17: K18R, Y79H, A90T, E91G, Q112-, Q113-, K114-, T115-, -120A, -121D; p2: -12T, M14L; p24: A14P, L15I, M96I, A116T, I135V, R203K; p6: R16K, P30Q, -35A, P37-; p7: I12T, R26K; pro: I36L, K70R; rev: E10D, A11E, I18T, K20R, H53R, I59V, H82N, S88R, G96Q, V97L, *101Q, S103F, A114T, E117*; tat: A21V, N24Q, H29R, S46Y, S57R, P81Q; vif: V55I, E99D, G101V, I128R, I130V, P131H, K167Q; vpr: Y15H, H40Q, Q44L, T55A, A89T; vpu: S3D, L12F, A19V, K37R, V79G"}}}, {"name": "KP109486", "node_attrs": {"div": 0.13689, "accession": "KP109486", "clade_membership": {"value": "C"}, "country": {"value": "IN"}, "date": {"value": 1999.0}, "Strain_name": {"value": "DEMC99IN001"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A215G", "A227T", "T306A", "C365G", "T419C", "A435C", "T467C", "T473G", "C482T", "T495G", "T560G", "G608A", "G612A", "G619T", "A638G", "C662T", "G667T", "-672G", "G690A", "-694A", "-695G", "-699A", "-700C", "T749C", "G956A", "A1028C", "A1074G", "A1088G", "A1101G", "G1173T", "T1174C", "T1244C", "T1451C", "-1459A", "A1525G", "A1536C", "G1552A", "A1622G", "C1656A", "-1729T", "-1730C", "-1731G", "-1732A", "-1733G", "T1735-", "C1736-", "G1740A", "A1741C", "G1742C", "A1743C", "A1746G", "C1748T", "G1752-", "C1753-", "T1754-", "C1755-", "C1756-", "G1757-", "C1790T", "A1804G", "T1832C", "C1849T", "A1966T", "A2002G", "C2047T", "T2101C", "A2422G", "G2470A", "A2524G", "C2540T", "T2542G", "A2579G", "G2580C", "A2592G", "A2616G", "A2641G", "A2686G", "A2734G", "G2914A", "A2923G", "A2925G", "G3016A", "A3037C", "T3045C", "C3055T", "C3100A", "A3127G", "A3214G", "T3310C", "T3412C", "T3496G", "A3511C", "A3529G", "T3550C", "G3583A", "A3607G", "C3649T", "C3652T", "A3676C", "A3682G", "C3691T", "A3760G", "A3985G", "T4129A", "T4144C", "A4376G", "A4420G", "A4684G", "G4774A", "T4799G", "C4871T", "A4968T", "A5046G", "G5082A", "C5125T", "A5236G", "T5275C", "A5282C", "A5299G", "A5312G", 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"T9054G", "A9065C", "G9066A", "T9130C"], "INT": ["I201V"], "RT-p51": ["S162A", "K166R", "K174R", "K277R", "V317A", "D335E"], "RT-p66": ["S162A", "K166R", "K174R", "K277R", "V317A", "D335E", "K527N"], "gp120": ["G3N", "G4-", "N5-", "-105S", "-106S", "-107V", "D157E", "N159E", "N160R", "S161K", "S162G", "P225S", "I243T", "Q262E", "D297N", "A301T", "H302Y", "S306K", "-308D", "K309D", "E312R", "N327R", "-328R", "K329I", "T330-", "K332N", "S336P", "S337A", "G361S", "-368N", "-370D", "-372N", "-373S", "N378S", "-379N", "-380S", "-383S", "-384L", "-385D", "A412E", "D429N", "N432I", "-433E", "N434S", "D449N", "V468I"], "gp41": ["F8I", "L9F", "R46K", "A67T", "Q108H", "D113G", "D129N", "K144Q", "N156E", "D163S", "N166K", "I193V", "T210I", "L219P", "D232G", "I235T", "A245V", "I264T", "T267A", "A270V", "K283R", "V322A", "R324G", "C326G", "R330I"], "nef": ["S8C", "A15D", "V16I", "M20I", "E24N", "H40Y", "V146E", "N157T", "Q170L", "S188E", "M194R"], "p1": ["H9N"], "p17": ["I34L", "S54A", "E93K", "R95L", "S111I", "Q113E", "-120E", "-121A"], "p2": ["-10N"], "p24": ["I115V", "I124V", "V148S"], "p6": ["-18E", "-19E", "E20-", "E21-", "T22-", "K42R"], "p7": ["K20R", "I24L", "R29K"], "pro": ["S12P"], "rev": ["Q14K", "I55L", "L73F", "D85G"], "tat": ["P60Q", "L68P", "P75S", "S84P"], "vif": ["K33R", "K36N", "R63K", "I128L", "I154V", "V166I", "T180I"], "vpr": ["I60L", "I70V", "Q77H", "L84V", "R85Q"], "vpu": ["R7K", "G9A", "V14A", "V34L", "K38R", "K44E", "D78G"]}, "labels": {"aa": "INT: I201V; RT-p51: S162A, K166R, K174R, K277R, V317A, D335E; RT-p66: S162A, K166R, K174R, K277R, V317A, D335E, K527N; gp120: G3N, G4-, N5-, -105S, -106S, -107V, D157E, N159E, N160R, S161K, S162G, P225S, I243T, Q262E, D297N, A301T, H302Y, S306K, -308D, K309D, E312R, N327R, -328R, K329I, T330-, K332N, S336P, S337A, G361S, -368N, -370D, -372N, -373S, N378S, -379N, -380S, -383S, -384L, -385D, A412E, D429N, N432I, -433E, N434S, D449N, V468I; gp41: F8I, L9F, R46K, A67T, Q108H, D113G, D129N, K144Q, N156E, D163S, N166K, I193V, T210I, L219P, D232G, I235T, A245V, I264T, T267A, A270V, K283R, V322A, R324G, C326G, R330I; nef: S8C, A15D, V16I, M20I, E24N, H40Y, V146E, N157T, Q170L, S188E, M194R; p1: H9N; p17: I34L, S54A, E93K, R95L, S111I, Q113E, -120E, -121A; p2: -10N; p24: I115V, I124V, V148S; p6: -18E, -19E, E20-, E21-, T22-, K42R; p7: K20R, I24L, R29K; pro: S12P; rev: Q14K, I55L, L73F, D85G; tat: P60Q, L68P, P75S, S84P; vif: K33R, K36N, R63K, I128L, I154V, V166I, T180I; vpr: I60L, I70V, Q77H, L84V, R85Q; vpu: R7K, G9A, V14A, V34L, K38R, K44E, D78G"}}}]}]}]}]}, {"name": "C_NODE_0000026", "node_attrs": {"div": 0.09074999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A286G", "G603A", "A607G", "G619A", "G771T", "A989G", "-1453C", "-1454A", "G1503A", "A1691G", "C1985G", "T2062C", "C2083T", "C2202A", "G2221A", "C2671T", "G2704A", "A3491G", "G4264A", "C4381T", "G5336A", "T5599G", "-5799G", "-5800G", "-5803A", "-5806A", "-5807T", "G5842-", "T5844-", "A6191T", 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"p2": ["-11A", "-12S", "I13V"], "p24": ["L83T", "A116Q", "K154R", "D187E"], "p6": ["S3N", "P5T", "E6V", "F17I", "-18E", "-19P", "P30L", "-35A", "P37-"], "p7": ["R26K", "A54V"], "pro": ["S12P", "F53L", "I62V", "G68E", "A71T", "M89L"], "rev": ["S8P", "V16I", "K39R", "S61F", "P67S", "A68T", "L73F", "H82N", "D84G", "C85D", "S92Y", "Q95L"], "tat": ["H29S", "L35P", "Q39L", "T40S", "Q54P", "S62N", "E63K", "N67D", "I69V"], "vif": ["V31I", "K36E", "R77K", "R92K", "G101S", "L102M", "S144F", "R167Q", "N176K"], "vpr": ["P4A", "L22I", "S41N", "E48A", "T55M", "I60L", "I61L"], "vpu": ["A19V", "S65A", "V69-", "D70-", "M71-", "G72-", "H73-", "L74-", "R75-", "L76-", "L77-", "D78-", "N80D", "D81M"]}, "labels": {"aa": "INT: Q9R, M50T, I72V, K211R, K219Q, G283S; RT-p51: E39K, T48E, K102-; RT-p66: E39K, T48E, K102-; gp120: N5Q, T22A, E55K, M56L, E59G, I80M, S82R, N102K, -105K, -106N, -107G, -109I, -111Y, -112N, -113N, -114T, -115M, -123K, -124G, L137I, R138K, D139H, Q142K, K143E, V144M, D157K, N158D, N160S, -161S, S162E, N169Y, T174A, A176T, V180I, N201Y, N212K, I243V, A253V, V264I, T269I, D294A, D297N, Q300E, H302Y, K307G, -308D, K309A, R316Q, K319R, N327G, -328R, K329S, K332R, N334A, S336H, K361R, -368N, -372K, -375T, -376G, -377S, -378W, T387I, E401K, T427V, N432T, -433T, N435A, T437D; gp41: I4L, S42N, M54L, A67T, D109E, D113N, I124V, E137V, N156Q, P203L, R221G, L242F, A243S, F263L, I266V, A267T, A268V, A270V, L274M, T306A, I307T, I309V, I319L, V321I, V322I, C326F, R330C, A342T; nef: S8R, S9K, G12Q, A15T, I20L, A27E, E28G, G29-, D38A, K39N, S45T, A50T, K105Q, Y120F, Q125H, A156N, K158Q, G159R, N162S, E176P, S188M, Y202F; p1: H9N; p17: K15E, H28K, M30R, G49E, S54A, E55D, L68F, L75I, T81S, V82I, T84V, K90R, K91R, I92L, E93T, V94I, S111C, A118E, A120M; p2: -11A, -12S, I13V; p24: L83T, A116Q, K154R, D187E; p6: S3N, P5T, E6V, F17I, -18E, -19P, P30L, -35A, P37-; p7: R26K, A54V; pro: S12P, F53L, I62V, G68E, A71T, M89L; rev: S8P, V16I, K39R, S61F, P67S, A68T, L73F, H82N, D84G, C85D, S92Y, Q95L; tat: H29S, L35P, Q39L, T40S, Q54P, S62N, E63K, N67D, I69V; vif: V31I, K36E, R77K, R92K, G101S, L102M, S144F, R167Q, N176K; vpr: P4A, L22I, S41N, E48A, T55M, I60L, I61L; vpu: A19V, S65A, V69-, D70-, M71-, G72-, H73-, L74-, R75-, L76-, L77-, D78-, N80D, D81M"}}}, {"name": "C_NODE_0000027", "node_attrs": {"div": 0.09423999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T303A", "C365G", "A977G", "-1459A", "A2080C", "C2266T", "G2329A", "C2335T", "T2356C", "G2392A", "G2413A", "A2473G", "C4706T", "G4737A", "G4769A", "C5171T", "G5448A", "T5611A", "-5801T", "-5804A", "-6198G", "A6263C", "-6992A", "-6996C", "-6997A", "-7001A", "-7002G", "-7003T", "-7005A", "-7008C", "-7150T", "G7589A", "A7771C", "T7801G", "-8369T", "C8460T"], "gp120": ["A133T", "N251D"], "gp41": ["A96S", "N166K"], "nef": ["H40Y"], "p17": ["K91G"], "p2": ["-10T", "-11N"], "vif": ["V51I"], "vpu": ["-6I", "-9I"]}, "labels": {"aa": "gp120: A133T, N251D; gp41: A96S, N166K; nef: H40Y; p17: K91G; p2: -10T, -11N; vif: V51I; vpu: -6I, -9I"}}, "children": [{"name": "C_NODE_0000028", "node_attrs": {"div": 0.11132999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T201C", "A215G", "G224A", "A379C", "T495G", "A500T", "A571T", "T698C", "-700A", "-714A", "G818A", "G836A", "G959A", "T978C", "G1002A", "-1452A", "A1487G", "G1619A", "G1687A", "A1942G", "T1996C", "A2086T", "C2107T", "T2206C", "G2273A", "C2326T", "A2389G", "C2467T", "T2542G", "T2581C", "T2620C", "C2632T", "A2725G", "G2950A", "T3165G", "G3292T", "G3382A", "G3385A", "A3427G", "G3439A", "A3454G", "T3469C", "G3484A", "G3544A", "A3556G", "C3589T", "G3595A", "C3652T", "A3816G", "T3889C", "A3989G", "G4109A", "C4585T", "G4664A", "G4685A", "T4715C", "C4724T", "A4805C", "T4820G", "T4857C", "A4867T", "G4901A", "A4949G", "C4967G", "T4975G", "T4979C", "C4988T", "T5003C", "T5018C", "G5036A", "G5045A", "A5057G", "T5084G", "A5085C", "G5134A", "A5143G", "G5176A", "C5182T", "T5237C", "A5267G", 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V102I, S106P, T114A; tat: L35Q, Q39L; vif: Q73H, D78E, Y94F, H127Q, I130S, R167Q, R183H, N186S; vpr: Y45H, T55A"}}, "children": [{"name": "AF443091", "node_attrs": {"div": 0.16341, "accession": "AF443091", "clade_membership": {"value": "C"}, "country": {"value": "BW"}, "date": {"value": 2000.0}, "Strain_name": {"value": "00BW147127"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T200G", "A371G", "A399C", "G452A", "T467C", "G612A", "A666T", "A675-", "A676-", "A677-", "A678-", "C679-", "A680-", "C681-", "A682-", "G683-", "G690A", "-695G", "-699G", "-701G", "G743A", "C747G", "T748C", "T749C", "C774A", "A785G", "T788C", "C879T", "A880C", "T884C", "C961T", "T992G", "A1025T", "A1028C", "A1074G", "T1091C", "A1101G", "T1103C", "C1137T", "A1145G", "T1322C", "A1346G", "T1362C", "G1388A", "A1400G", "C1409T", "G1421T", "C1439T", "C1448T", "A1461G", "G1474A", "A1476G", "T1481C", "T1493C", "A1495G", "A1500G", "G1532A", "A1536C", "C1610A", "G1622A", "C1655T", "C1658G", 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"K312S", "R316Q", "K319R", "K322E", "E323K", "E334Q", "N358Y", "S360T", "-372Y", "S373N", "N374D", "-375T", "-376G", "-377S", "-378E", "-379S", "-380N", "L388I", "R404Q", "K418R", "T436E", "E437D", "E454K", "T471N", "E472K"], "gp41": ["L45M", "I72L", "K77Q", "S96P", "Q108V", "E110D", "D113K", "Q119E", "S125N", "T130I", "E137K", "N140K", "K147Q", "D148E", "N156E", "D163S", "K166R", "I193V", "T210I", "G220E", "D232G", "N239S", "A243T", "L254I", "H258R", "R259L", "R261S", "L265S", "E272N", "V289G", "L304F", "V321A", "F326V", "N331H", "R337E", "G339T", "A342P", "A343P"], "nef": ["R17K", "A28V", "S45A", "S46N", "A49P", "W57R", "E64D", "A83G", "S88G", "L100M", "R151K", "E154*", "E155D", "E174D", "K184V"], "p1": ["H9Q"], "p17": ["E93K", "S111C", "Q113-", "K114-", "T115-"], "p2": ["-12V", "I13-"], "p24": ["L6A", "L15I", "Q50S", "A77V", "H87Q", "V91I", "E98D", "I115V", "I124V"], "p6": ["T8S"], "p7": ["R3K", "S4G", "K10R", "I12V", "I24L", "D48E"], "pro": ["E35D", "T74S"], "rev": ["K20R", "S61D", "P67L", "P72H", "Q74P", "G90E", "T91P", "C107W"], "tat": ["E2D", "N7K", "K24T", "H29K", "S31C", "T40N", "E63K", "N67D", "L68P", "I69L", "P75S", "E85K"], "vif": ["R17K", "V31I", "F39V", "K50R", "E61D", "R63K", "R92K", "R93S", "D117G", "N140S", "K158R", "V166L", "R173K"], "vpr": ["I60L", "I61L", "L84I", "R85P", "A93S", "S94R"]}, "labels": {"aa": "INT: S24N, T97A, K111Q, E152K, Q177L, I201V, T206S, I218T, D232E, I234V, K269R; RT-p51: T35K, E36A, E53K, R78K, E122R, D186N, G190R, P272A, K277R, E308K, D335E, R357K, T359S, E370D, W410*, T419A, E432D; RT-p66: T35K, E36A, E53K, R78K, E122R, D186N, G190R, P272A, E308K, D335E, R357K, T359S, E370D, W410*, T419A, E432D, R461K, Q483K, K512D, E529D, R530K; gp120: V3L, N57Y, E59V, L83I, N102Y, -105N, -106V, -107T, -109M, -111E, I126M, Q142T, V144E, Y145R, N159S, A172T, S181T, K203E, Q218L, A238S, E240G, I243M, H259Q, E262K, S263P, N272G, I279V, K307N, -308S, K309N, K312S, R316Q, K319R, K322E, E323K, E334Q, N358Y, S360T, -372Y, S373N, N374D, -375T, -376G, -377S, -378E, -379S, -380N, L388I, R404Q, K418R, T436E, E437D, E454K, T471N, E472K; gp41: L45M, I72L, K77Q, S96P, Q108V, E110D, D113K, Q119E, S125N, T130I, E137K, N140K, K147Q, D148E, N156E, D163S, K166R, I193V, T210I, G220E, D232G, N239S, A243T, L254I, H258R, R259L, R261S, L265S, E272N, V289G, L304F, V321A, F326V, N331H, R337E, G339T, A342P, A343P; nef: R17K, A28V, S45A, S46N, A49P, W57R, E64D, A83G, S88G, L100M, R151K, E154*, E155D, E174D, K184V; p1: H9Q; p17: E93K, S111C, Q113-, K114-, T115-; p2: -12V, I13-; p24: L6A, L15I, Q50S, A77V, H87Q, V91I, E98D, I115V, I124V; p6: T8S; p7: R3K, S4G, K10R, I12V, I24L, D48E; pro: E35D, T74S; rev: K20R, S61D, P67L, P72H, Q74P, G90E, T91P, C107W; tat: E2D, N7K, K24T, H29K, S31C, T40N, E63K, N67D, L68P, I69L, P75S, E85K; vif: R17K, V31I, F39V, K50R, E61D, R63K, R92K, R93S, D117G, N140S, K158R, V166L, R173K; vpr: I60L, I61L, L84I, R85P, A93S, S94R"}}}, {"name": "FJ496209", "node_attrs": {"div": 0.15899999999999997, "accession": "FJ496209", "clade_membership": {"value": "C"}, "country": {"value": "ZM"}, "date": {"value": 2003.0}, "Strain_name": {"value": "ZM249M_flC1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C152-", "G157A", "T159G", "-160T", "T200C", "G216A", "A354G", "A362C", "T377C", "A378T", "A393C", "C417A", "T419A", "T424G", "C435A", "C456A", "G481A", "C482G", "A492T", "A507C", "A508T", "A509G", "A515T", "A516C", "C525A", "C537A", "G554A", "G562A", "C572T", "C575T", "A603C", "A605G", "G606A", "G615A", "C618A", "C623T", "G654A", "A655T", "C672A", "A678G", "-695T", "C697A", "-699C", "-701A", "G740A", "C767T", "T771C", "G791A", "G815A", "T827C", "A869T", "A932G", "G956A", "T1003A", "A1022G", "A1025G", "A1079C", "G1109A", "T1136C", "G1139A", "G1142A", "T1172A", "A1192G", "G1199A", "G1205A", "C1229T", "C1230A", "T1271G", "C1304T", "A1367G", "A1404G", "A1418G", "C1444T", "A1464C", "A1503G", "C1517T", "C1535T", "G1568A", "C1656A", "G1673A", "C1679T", "T1682C", "C1755T", "G1852A", "T1986G", 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"A121D", "E122Q"], "p2": ["A7V", "M14L"], "p24": ["S14P", "V91N", "K154R", "D180E", "S225G"], "p6": ["P26S"], "p7": ["I13V"], "pro": ["V63G"], "rev": ["A11V", "Q74L", "T91A", "T92A", "G93E", "E95D", "G111E", "K116R"], "tat": ["P6H", "E9D", "K24Q", "A58T", "P73S"], "vif": ["K36N", "R132K", "N176K", "N190S"], "vpr": ["P4T", "T19A", "E48N", "A89T"], "vpu": ["-7S", "-8L", "-10E", "I21V", "V26A", "V34L", "E58D", "G72E", "D81E"]}, "labels": {"aa": "INT: D41N, A265V; RT-p51: V8I, E39R, D123N, Q174K, K211R, E248K, D250E, I309V, H334Q, A435L; RT-p66: V8I, E39R, D123N, Q174K, K211R, E248K, D250E, R277K, I309V, H334Q, A435L, L452I, S468A, L484I, S554N; gp120: V2G, V3N, G4-, N5-, T104-, -109N, T110V, -111N, -112V, -113T, -114H, -115N, -116S, -117T, -118Y, -119N, -120N, -121T, -122E, -123G, -124E, E125Q, T133I, R150K, V154L, D157N, N159D, N160S, S162E, T208K, G222E, E240K, L249I, A253V, T255I, V267N, D294E, D297K, Q300E, -308E, Q315L, K322R, Y324H, N327G, T330A, N358T, -368N, T371N, -372N, -375E, -385T, I386L, P389T, R391K, A412E, N414S, K418N, N420T, N432S, -433K, R448K; gp41: S101T, Q108K, D109A, K129Q, N140S, A151E, T208I, V238A, D247E, S251N, L256F, G275R, G293S, K298E, D305N, A325G, I332V, R334T, F340L, A342R; nef: A33V, K39R, Y40F, L43V, N51T, C55V, W57C, Q59E, A83S, F85V, I101V, Y120F, V133I, N162L, C163S, S169C, M173I, E176T, D177E, K182I, S188H, L198I; p1: H9N; p17: I7V, R9S, T15S, H28K, M30R, L34I, L41M, G49E, T53S, K58L, I61L, L64I, L68I, R76K, K90Q, G91R, V94I, Q95K, E107I, Q113K, T115A, K119E, A121D, E122Q; p2: A7V, M14L; p24: S14P, V91N, K154R, D180E, S225G; p6: P26S; p7: I13V; pro: V63G; rev: A11V, Q74L, T91A, T92A, G93E, E95D, G111E, K116R; tat: P6H, E9D, K24Q, A58T, P73S; vif: K36N, R132K, N176K, N190S; vpr: P4T, T19A, E48N, A89T; vpu: -7S, -8L, -10E, I21V, V26A, V34L, E58D, G72E, D81E"}}}]}, {"name": "C_NODE_0000029", "node_attrs": {"div": 0.09972999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A418G", "T419C", "G614-", "T636C", "A715-", "G716-", "A1495G", "G1985A", "T1986C", "C2199A", "A2716G", "G3094A", "G3643A", "A3817G", "A3866G", "C4024T", "T4074A", "A4581G", "G4636A", "A4786C", "G5437C", "G5538A", "A5581G", "T5626G", "G5632A", "G5815-", "A5816-", "T5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "C5824-", "A5825-", "T5826-", "C5827-", "T5828-", "T5829-", "A5840T", "A5845G", "T6334C", "C6403T", "T6631A", "A6773G", "T6778A", "A6856C", "C6857T", "-6962A", "-6969A", "-6970T", "T7325C", "G7502A", "A7791G", "C7950T", "C8047T", "C8103T", "G8267A", "T8501G", "T8504C", "A8844G", "A8922C", "C9012A"], "INT": ["I31V", "F100Y", "K269R"], "RT-p51": ["T35K"], "RT-p66": ["T35K"], "gp120": ["-105D", "-124G", "I153V", "H259Q", "K307E", "P335S", "-433S"], "gp41": ["F8L", "A67T", "D109T", "D163S", "P216L", "A267V"], "nef": ["M168A", "M194L"], "p17": ["H28R"], "p7": ["K10R"], "pro": ["V63T"], "rev": ["P67S"], "tat": ["A21P", "I69V", "P81S"], "vif": ["R17K", "K36S", "K67T"], "vpu": ["-4L"]}, "labels": {"aa": "INT: I31V, F100Y, K269R; RT-p51: T35K; RT-p66: T35K; gp120: -105D, -124G, I153V, H259Q, K307E, P335S, -433S; gp41: F8L, A67T, D109T, D163S, P216L, A267V; nef: M168A, M194L; p17: H28R; p7: K10R; pro: V63T; rev: P67S; tat: A21P, I69V, P81S; vif: R17K, K36S, K67T; vpu: -4L"}}, "children": [{"name": "DQ351229", "node_attrs": {"div": 0.14145999999999997, "accession": "DQ351229", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03ZAPS083MB1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A124G", "G286A", "G317A", "T357C", "G365A", "T396C", "C426A", "C434T", "A511G", "A518G", "A519G", "C558T", "T560A", "C572T", "A578G", "A581G", "T587C", "A592T", "T593G", "A603C", "A604G", "A605C", "G608C", "-614T", "T668C", "G690A", "-695G", "-699G", "-700A", "-701C", "-705A", "-706A", "-707A", "T749C", "T771C", "C773T", "C823G", "T827C", "G829A", "A905G", "G956A", "T992G", "A995G", 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"A8980T", "G8991A", "G8994A", "-8997G", "A8998-", "T9000G", "C9006G", "G9007A", "A9009-", "A9027C", "C9028T", "G9030A", "-9033G", "G9097T", "T9132G"], "INT": ["E11D", "S24N", "M50I", "S119P", "D167E"], "RT-p51": ["V8I", "K126R", "E177D", "Q197K", "A200E", "E207Q", "K277R", "A286V", "D335E", "T369A", "D399E", "T400I", "T403I", "A435I", "A437V"], "RT-p66": ["V8I", "K126R", "E177D", "Q197K", "A200E", "E207Q", "A286V", "D335E", "T369A", "D399E", "T400I", "T403I", "A435I", "A437V", "G444E", "L452M", "Y457H", "V458I", "S468T", "Q480K", "S515P"], "gp120": ["S1N", "V40I", "N102E", "-106N", "-107V", "N108T", "T110-", "-115S", "-116N", "-117G", "-118T", "-119S", "-120I", "-121S", "-122Q", "-123D", "L137I", "K143N", "L151T", "D157-", "N159D", "-161N", "R164I", "S181T", "T220I", "R245K", "E247A", "D251N", "V258I", "T269V", "I279V", "D294I", "D297N", "I305V", "-308R", "K309Q", "R316M", "G318V", "K319R", "K332A", "R351G", "Y367-", "-368F", "-372Y", "S373M", "N374H", "-375N", "-376G", "-377S", "-378N", "-379T", "-383S", "-384S", "-385T", "L388I", "R391K", "N434T", "T436E", "I439T", "G443E", "S453N"], "gp41": ["I84L", "S96N", "E110D", "S125N", "D129N", "T130I", "R133K", "N140S", "K144E", "R231K", "D232E", "V238A", "D247G", "S251N", "R259Q", "V267L", "A268T", "A270T", "S287N", "Q290L"], "nef": ["G3A", "Q35R", "A49P", "A83E", "I101L", "Y120F", "R151S", "N161D", "Q170L", "D177E", "R178G", "K182Q"], "p1": ["I5V"], "p17": ["L31I", "Q59R", "I61M", "K62E", "Y86L", "K90R", "E93D", "E122D"], "p2": ["N11H"], "p24": ["S14P", "A31G", "S33N", "H87Q", "T110N", "I115V", "T210S"], "p6": ["P30T"], "p7": ["R3K", "S4G", "I12N", "I24L"], "pro": ["S12A", "I19V", "V82I"], "rev": ["S5G", "S8N", "Q51K", "R66G", "L73F", "C85S", "S86D", "S88N", "K116-"], "tat": ["K51R", "A58T"], "vif": ["R33K", "F39A", "K50R", "I130F"], "vpr": ["P14S", "T19A", "S41G", "I46V", "I70V", "R85Q", "Q86H", "A89T", "S94G"], "vpu": ["-2N", "-3L", "-5T", "I6R", "-7V", "-8D", "-10G", "A15G", "I21V", "V34L", "R37K", "R47G", "V79-", "N80-"]}, "labels": {"aa": "INT: E11D, S24N, M50I, S119P, D167E; RT-p51: V8I, K126R, E177D, Q197K, A200E, E207Q, K277R, A286V, D335E, T369A, D399E, T400I, T403I, A435I, A437V; RT-p66: V8I, K126R, E177D, Q197K, A200E, E207Q, A286V, D335E, T369A, D399E, T400I, T403I, A435I, A437V, G444E, L452M, Y457H, V458I, S468T, Q480K, S515P; gp120: S1N, V40I, N102E, -106N, -107V, N108T, T110-, -115S, -116N, -117G, -118T, -119S, -120I, -121S, -122Q, -123D, L137I, K143N, L151T, D157-, N159D, -161N, R164I, S181T, T220I, R245K, E247A, D251N, V258I, T269V, I279V, D294I, D297N, I305V, -308R, K309Q, R316M, G318V, K319R, K332A, R351G, Y367-, -368F, -372Y, S373M, N374H, -375N, -376G, -377S, -378N, -379T, -383S, -384S, -385T, L388I, R391K, N434T, T436E, I439T, G443E, S453N; gp41: I84L, S96N, E110D, S125N, D129N, T130I, R133K, N140S, K144E, R231K, D232E, V238A, D247G, S251N, R259Q, V267L, A268T, A270T, S287N, Q290L; nef: G3A, Q35R, A49P, A83E, I101L, Y120F, R151S, N161D, Q170L, D177E, R178G, K182Q; p1: I5V; p17: L31I, Q59R, I61M, K62E, Y86L, K90R, E93D, E122D; p2: N11H; p24: S14P, A31G, S33N, H87Q, T110N, I115V, T210S; p6: P30T; p7: R3K, S4G, I12N, I24L; pro: S12A, I19V, V82I; rev: S5G, S8N, Q51K, R66G, L73F, C85S, S86D, S88N, K116-; tat: K51R, A58T; vif: R33K, F39A, K50R, I130F; vpr: P14S, T19A, S41G, I46V, I70V, R85Q, Q86H, A89T, S94G; vpu: -2N, -3L, -5T, I6R, -7V, -8D, -10G, A15G, I21V, V34L, R37K, R47G, V79-, N80-"}}}, {"name": "C_NODE_0000030", "node_attrs": {"div": 0.11048999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T305-", "T473-", "A527-", "T1004-", "A1017-", "G1260-", "A1263-", "T1271-", "T1484C", "T1646C", "C1751T", "C2107T", "G2210A", "A2211C", "G2422A", "A2611G", "C2806T", "G2925A", "G2951A", "G3070A", "T3165A", "G3292T", "G3494A", "A3529G", "G3775A", "C3865T", "G4145A", "T4428C", "T4656C", "G4677A", "A4805G", "T4820A", "C5114G", "G5359T", "G5386A", "A5418G", "C5461A", "C5463A", "T5466C", "C5472T", "C5479T", "C5513A", "G5563A", "-5600T", "-5601A", "G5636T", "G5643T", "A5644G", "A5866G", "G5893A", "A6166C", "-6170G", "-6172A", "-6174A", "A6176G", "-6180A", "-6204G", "C6252T", "T6325C", "T6337C", "A6576G", "T6586C", "A6605G", "A6635G", "G6655A", "T6760C", "A6809G", "A6848C", "A6947G", "-6956A", "-6957A", "-6963C", "-6964A", "-6973T", "-6974A", "-6979A", "-6981G", "-7006A", "G7072A", "C7089A", "-7152G", "-7162C", "G7366A", "G7369A", "T7403C", "G7495A", "C7825T", "T7921G", "A7936G", "C8037T", "G8144A", "G8168A", "G8170A", "A8503C", "C8517G", "G8561A", "C8597T", "A8604G", "C8666G", "A8688C", "T8701A", "T8747C", "T8766C", "G8767C", "C8768A", "C8789T", "A8887T", "A8904C", "G8905A", "G8914A", "T9029-"], "INT": ["I218T"], "RT-p51": ["E39T", "A286T", "M357R"], "RT-p66": ["E39T", "R277K", "A286T", "M357R", "V467I"], "gp120": ["T104S", "T133V", "E241G", "N261D", "R316K", "K319E", "K332Q", "S365G", "M406I", "A412E"], "gp41": ["F206L", "A281T", "V289I", "V322I"], "nef": ["D54A", "Q59E", "S88G", "D108E", "N116H", "C142P", "K182M", "S188H", "R191H"], "rev": ["K30E", "S99N", "C107Y", "A108T"], "tat": ["V4I", "H29K", "S46Y", "E63K", "L68P", "Q76R", "R78Q"], "vif": ["V31I", "D78E", "N176K"], "vpr": ["P4A", "S94N"], "vpu": ["-8V", "-10V", "L12F", "I13V", "S65A"]}, "labels": {"aa": "INT: I218T; RT-p51: E39T, A286T, M357R; RT-p66: E39T, R277K, A286T, M357R, V467I; gp120: T104S, T133V, E241G, N261D, R316K, K319E, K332Q, S365G, M406I, A412E; gp41: F206L, A281T, V289I, V322I; nef: D54A, Q59E, S88G, D108E, N116H, C142P, K182M, S188H, R191H; rev: K30E, S99N, C107Y, A108T; tat: V4I, H29K, S46Y, E63K, L68P, Q76R, R78Q; vif: V31I, D78E, N176K; vpr: P4A, S94N; vpu: -8V, -10V, L12F, I13V, S65A"}}, "children": [{"name": "MK458157", "node_attrs": {"div": 0.16842, "accession": "MK458157", "clade_membership": {"value": "C"}, "country": {"value": "BW"}, "date": {"value": 2015.0}, "Strain_name": {"value": "074_C_319_1_1_w74_393"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A227C", 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"A8400C", "A8402C", "A8405G", "A8409G", "T8444C", "A8458G", "T8460C", "C8489T", "G8490C", "C8491A", "C8500A", "G8528A", "A8534G", "G8564A", "G8588A", "C8590G", "T8595A", "C8603T", "G8660A", "T8711C", "A8717G", "A8750T", "A8793G", "C8809A", "T8832C", "T8845C", "G8846A", "T8855C", "G8917T", "C8922G", "G8924A", "G8931C", "T8939C", "T9014G", "G9015A", "-9033G", "C9078T", "C9093T", "A9099G", "G9136A"], "INT": ["K34R", "V112I", "A124N", "T206S", "I234L", "M275V", "A278S"], "RT-p51": ["T27S", "K35I", "K103N", "D123S", "E138K", "T139A", "A173T", "Y181C", "I202V", "E207D", "E248S", "I274V", "Q278N", "K281R", "H334N", "A360T", "M377Q", "I434M"], "RT-p66": ["T27S", "K35I", "K103N", "D123S", "E138K", "T139A", "A173T", "Y181C", "I202V", "E207D", "E248S", "I274V", "Q278N", "K281R", "H334N", "A360T", "M377Q", "I434M", "L452A", "K454R", "K476Q", "Q480K", "Q524L", "I526V", "K527Q", "E529D"], "gp120": ["V3M", "N5S", "K18Q", "E19D", "A32G", "M56L", "E59G", "D105T", "-106E", "-107N", "N108E", "-109D", 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"A83G", "F85I", "R151G", "A156D", "R192I", "L194V", "E197Q", "Y202F"], "p2": ["T10-", "N11A", "-12H"], "p24": ["N183K"], "p6": ["S3N", "T8S", "-18G", "-19E", "E20-", "E21-", "P26Q", "P30S", "K31Q", "R33-", "E34-", "P37-", "T39I"], "p7": ["S4G", "P9G", "R10P", "R11K", "I12R", "I24L"], "pro": ["I19V", "T63P"], "rev": ["S8P", "I18T", "E32R", "K39R", "S54Q", "C63V", "I78L", "T94A", "Q95E", "V102I", "S106P", "K115*"], "tat": ["E2D", "N12K", "K24N", "T40R", "Q54P", "P60S", "N67D", "K71E", "P75S", "S84P"], "vif": ["V7A", "R19K", "R33K", "G37K", "R41K", "H48N", "P58S", "R63K", "R93S", "G101D", "M109I", "P131H", "Q136P", "N140S", "K157R", "K158R", "I159R", "K176E", "T180I"], "vpr": ["Q3R", "L22I", "H40Y", "R85P", "A93S"], "vpu": ["-2I", "-3E", "L4W", "-5L", "-7G", "V10A", "I18L", "T24I", "L33I", "R35K", "K44E", "R47E", "T61I", "H73R", "V79N", "N80I", "D81-", "L82-"]}, "labels": {"aa": "INT: K34R, V112I, A124N, T206S, I234L, M275V, A278S; RT-p51: T27S, K35I, K103N, D123S, E138K, T139A, A173T, Y181C, I202V, E207D, E248S, I274V, Q278N, K281R, H334N, A360T, M377Q, I434M; RT-p66: T27S, K35I, K103N, D123S, E138K, T139A, A173T, Y181C, I202V, E207D, E248S, I274V, Q278N, K281R, H334N, A360T, M377Q, I434M, L452A, K454R, K476Q, Q480K, Q524L, I526V, K527Q, E529D; gp120: V3M, N5S, K18Q, E19D, A32G, M56L, E59G, D105T, -106E, -107N, N108E, -109D, -111T, -112T, -113I, -114N, -115S, -116T, -117G, -118N, -119Y, -120S, -121I, -122A, -123R, G124E, I126M, K127R, K141Q, Q142K, R150K, V153T, N159K, -161S, A172T, T174S, V180I, Y195F, N212Q, A238S, E240K, L249I, S263Y, E265K, V267T, N272G, K277Q, D294A, -308Q, K309D, K312R, Q315Y, G318T, -328T, K329-, I343V, K361G, -372A, S373Y, -375N, -376T, -377G, -378N, -379N, -380T, -381E, -383S, -384K, -385N, I392L, N414H, K418V, T427V, N432I, N435K, T436S, T437K, I439T, K474H; gp41: V69I, L81F, G83S, I84L, S96N, Q108K, T109E, E110Y, R122K, D129G, T130I, R133S, N140I, K144Q, S154R, S163G, K166N, T210I, R214G, L219P, R221G, R231K, R233K, A245F, H258R, R276Q, K298R, L304F, T306A, I307T, V321L, Q323L, I325G, I332V, A342T; nef: S9C, I20L, T23A, G29A, K39R, Y40H, A50H, A53E, A83G, F85I, R151G, A156D, R192I, L194V, E197Q, Y202F; p2: T10-, N11A, -12H; p24: N183K; p6: S3N, T8S, -18G, -19E, E20-, E21-, P26Q, P30S, K31Q, R33-, E34-, P37-, T39I; p7: S4G, P9G, R10P, R11K, I12R, I24L; pro: I19V, T63P; rev: S8P, I18T, E32R, K39R, S54Q, C63V, I78L, T94A, Q95E, V102I, S106P, K115*; tat: E2D, N12K, K24N, T40R, Q54P, P60S, N67D, K71E, P75S, S84P; vif: V7A, R19K, R33K, G37K, R41K, H48N, P58S, R63K, R93S, G101D, M109I, P131H, Q136P, N140S, K157R, K158R, I159R, K176E, T180I; vpr: Q3R, L22I, H40Y, R85P, A93S; vpu: -2I, -3E, L4W, -5L, -7G, V10A, I18L, T24I, L33I, R35K, K44E, R47E, T61I, H73R, V79N, N80I, D81-, L82-"}}}, {"name": "AF443101", "node_attrs": {"div": 0.14986, "accession": "AF443101", "clade_membership": {"value": "C"}, "country": {"value": "BW"}, "date": {"value": 2000.0}, "Strain_name": {"value": "00BW192113"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G216A", "G224A", "A227T", "A278G", "-280G", "-305A", "A379C", "G438A", "G444A", "-473A", "G481A", "A519C", "-527T", "-614A", "-695G", "-699G", "-700C", "-701C", "-705A", "-706A", "-707A", "C774A", "G791A", "A797G", "G815A", "G818A", "T858C", "A920G", "G959A", "T974C", "G1002A", "-1004A", "-1017T", "A1022G", "G1090A", "A1101G", "T1136C", "G1139A", "G1142A", "T1172C", "T1182C", "G1205A", "C1230A", "G1232A", "C1235T", "-1260T", "-1263T", "A1265G", "A1268G", "-1271A", "A1274G", "T1420C", "-1452A", "G1474A", "A1503G", "C1556T", "G1562A", "C1706T", "A1840G", "A1882G", "T1957C", "T1996A", "A2018G", "A2026G", "A2059G", "C2080T", "A2086C", "A2203G", "A2260T", "T2263C", "G2273A", "A2287G", "C2296T", "A2327G", "T2335C", "T2365C", "A2455G", "T2527C", "C2575T", "A2626T", "A2727G", "A2818G", "T2824C", "C2828A", "A2829T", "G2830T", "A2840C", "T2845A", "C2890T", "C2908T", "C2909G", "A2923G", "G2926A", "C2930T", "T2932G", "C2941T", "G2947A", "G2950A", "C2953T", "C2968T", "A2980G", "T2996C", "A3046T", "C3067A", "T3097A", "A3107T", "G3142A", "G3151A", "A3170T", "G3205A", "A3217G", "C3223T", "G3340A", "G3382A", "G3385A", "A3388G", "C3399T", "T3412C", "A3427G", "G3439A", "A3449C", "T3469C", "C3475T", "G3477A", "G3484A", "T3497A", "T3541A", "A3619G", "G3631A", "C3665G", "G3808A", "G3850A", "T3856C", "A4003C", "G4036A", "T4165C", "A4225G", "C4258T", "A4264G", "C4396T", "A4402G", "A4432C", "T4441A", "T4537C", "A4544G", "A4573G", "G4623A", "C4667T", "T4706C", "A4737G", "G4859A", "G4870A", "C4871A", "C4937A", "A4950C", "C5019T", "T5072A", "A5085C", "C5182T", "C5203T", "C5213A", "G5226A", "G5246C", "G5257A", "T5281C", "A5282C", "T5304C", "T5355A", "T5356C", "G5357T", "A5362C", "G5363A", "C5397A", "T5415C", "A5433C", "A5444C", "T5445C", "A5446C", "A5447C", "T5451C", "G5581C", "-5602A", "A5611T", "T5616C", "A5620G", "T5621C", "G5626A", "G5629A", "G5630C", "T5645C", "G5647A", "A5652C", "C5653T", "A5656T", "T5684C", "A5689C", "T5704C", "A5712G", "T5728A", "T5789C", "A5793G", "A5797T", "T5801C", "-5802A", "A5804C", "-5805A", "-5815G", "-5816A", "-5817T", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824C", "-5825A", "-5826G", "-5827C", "-5828T", "-5829T", "T5840G", "T5843-", "G5845C", "A5849G", "T5850C", "T5941C", "A5958C", "C6010T", "T6024C", "T6101C", "A6167G", "-6171C", "-6175G", "A6177G", "G6179A", "A6182G", "A6185-", "T6187-", "A6194G", "T6196A", "A6197G", "-6201A", "-6203A", "-6205G", "-6207C", "-6208T", "A6276G", "A6281C", "A6311G", "C6318A", "T6322G", "A6329-", "A6330-", "A6332-", "C6334-", "A6338G", "-6340G", "C6394T", "T6395A", "T6397A", "T6490C", "T6551C", "C6562T", "T6624C", "C6632T", "T6634G", "G6638C", "T6641G", "T6654A", "C6670T", "T6747C", "A6767G", "A6774C", "A6777G", "A6780C", "A6812G", "A6819G", "G6821A", "T6824C", "G6894C", "C6895T", "A6935C", "T6943C", "A6959G", "-6965T", "-6966A", "-6967C", "-6968A", "-6971G", "-6972G", "-6975C", "-6976A", "-6977G", "-6978A", "-6980A", "-6982T", "-6993A", "-6994T", "-6995T", "-6998G", "-6999G", "-7000T", "G7002A", "-7004T", "A7005C", "-7009T", "A7056G", "A7135G", "T7138G", "A7147G", "T7150A", "A7151G", "-7153G", "A7157G", "G7160A", "A7161C", "A7163G", "G7182A", "G7197A", "G7199A", "G7234A", "A7245G", "A7256G", "G7268A", "G7270A", "G7307-", "T7308-", "G7309-", "G7311C", "T7411A", "G7440A", "A7441G", "A7463C", "T7537C", "C7544A", "A7589T", "T7618C", "A7626T", "G7628A", "A7629C", "T7633A", "C7684T", "C7690A", "C7699T", "A7714C", "A7735G", "A7744G", "C7771T", "T7783C", "G7790A", "G7831A", "G7835A", "A7840G", "G7846A", "A7855G", "T7879C", "G7942C", "G7947A", "A7998G", "C8005A", "G8030C", "C8044A", "C8051A", "C8092A", "A8099G", "T8101G", "G8113A", "G8185A", "G8234A", "T8235C", "G8254A", "A8284G", "C8286T", "G8304C", "T8337A", "A8342G", "T8366C", "A8402G", "G8407A", "G8414A", "A8441T", "A8446G", "C8488T", "G8490A", "A8494C", "G8501C", "A8522G", "G8529A", "A8536G", "A8537G", "C8702T", "G8774A", "T8786G", "G8794A", "A8816G", "G8844T", "T8855A", "C8882A", "C8906A", "A8918G", "C8930T", "C8934A", "T8935A", "T8947G", "T8948G", "A9012T", "-9029A", "T9115C", "A9135G"], "INT": ["A124T", "K219N", "N222K", "I257V", "G283D"], "RT-p51": ["V60I", "R78G", "E177D", "K211R", "Q245I", "K249Q", "D250E", "P272A", "D324E", "H334Q", "T338S", "R357K", "T359S", "A435V"], "RT-p66": ["V60I", "R78G", "E177D", "K211R", "Q245I", "K249Q", "D250E", "P272A", "D324E", "H334Q", "T338S", "R357K", "T359S", "A435V", "R461K", "S468T", "Q524E"], "gp120": ["K35T", "V57A", "N102K", "-106A", "-107K", "-109R", "K141R", "K143Q", "P155Q", "D157N", "N159S", "N160E", "S162-", "S181T", "I257T", "E262Q", "S263A", "V267E", "D297N", "I298T", "I305V", "E307A", "-308G", "K309A", "K320E", "K322R", "E323K", "Y324H", "S347T", "K361Q", "-368N", "T371G", "-372N", "N374T", "E401G", "N432K", "S433G", "N435D", "T437A", "G443E", "R448K", "D449N", "K464R", "I468V", "E472K"], "gp41": ["V2A", "G3L", "I4-", "R46K", "M54L", "L81I", "Q108L", "D129E", "E137D", "M176I", "V178I", "G215E", "D232G", "A243P", "A245V", "D247E", "F263L", "I266V", "R277S", "V311T", "A328V", "R334T", "L345Q"], "nef": ["I20M", "R22K", "Q35R", "A49V", "A50T", "N51T", "E63K", "E65G", "R151K", "A168L", "H171Q", "H188Q", "L198K", "Y202W"], "p17": ["K15T", "V35I", "A37T", "G49D", "K62Q", "K119E", "E122A"], "p24": ["L15I", "V91I", "M96L", "S120N", "I124V", "A177S", "T178S", "D180E", "V230A"], "p7": ["R3K", "I13V"], "pro": ["T74A"], "rev": ["S8N", "E32Q", "H53N", "S61T", "A68E", "H82N", "D84G", "C85G", "G89S", "G113R", "T114A"], "tat": ["N7K", "K19N", "N23T", "K24P", "V69L", "Q78P", "D80N"], "vif": ["V13I", "S36N", "I51V", "S95K", "D117E", "K122Q", "R167Q"], "vpr": ["P37T", "S41N", "E48Q", "I60L", "L67P", "L84T", "R85L", "Q86P"], "vpu": ["-2L", "-3D", "-5A", "I6A", "-7I", "V13A", "V14I", "I17F", "V26A", "I28L", "W41R", "V69-", "D70-", "M71-", "G72-", "H73-", "L74-", "R75-", "L76-", "L77-", "D78-", "N80D", "D81M"]}, "labels": {"aa": "INT: A124T, K219N, N222K, I257V, G283D; RT-p51: V60I, R78G, E177D, K211R, Q245I, K249Q, D250E, P272A, D324E, H334Q, T338S, R357K, T359S, A435V; RT-p66: V60I, R78G, E177D, K211R, Q245I, K249Q, D250E, P272A, D324E, H334Q, T338S, R357K, T359S, A435V, R461K, S468T, Q524E; gp120: K35T, V57A, N102K, -106A, -107K, -109R, K141R, K143Q, P155Q, D157N, N159S, N160E, S162-, S181T, I257T, E262Q, S263A, V267E, D297N, I298T, I305V, E307A, -308G, K309A, K320E, K322R, E323K, Y324H, S347T, K361Q, -368N, T371G, -372N, N374T, E401G, N432K, S433G, N435D, T437A, G443E, R448K, D449N, K464R, I468V, E472K; gp41: V2A, G3L, I4-, R46K, M54L, L81I, Q108L, D129E, E137D, M176I, V178I, G215E, D232G, A243P, A245V, D247E, F263L, I266V, R277S, V311T, A328V, R334T, L345Q; nef: I20M, R22K, Q35R, A49V, A50T, N51T, E63K, E65G, R151K, A168L, H171Q, H188Q, L198K, Y202W; p17: K15T, V35I, A37T, G49D, K62Q, K119E, E122A; p24: L15I, V91I, M96L, S120N, I124V, A177S, T178S, D180E, V230A; p7: R3K, I13V; pro: T74A; rev: S8N, E32Q, H53N, S61T, A68E, H82N, D84G, C85G, G89S, G113R, T114A; tat: N7K, K19N, N23T, K24P, V69L, Q78P, D80N; vif: V13I, S36N, I51V, S95K, D117E, K122Q, R167Q; vpr: P37T, S41N, E48Q, I60L, L67P, L84T, R85L, Q86P; vpu: -2L, -3D, -5A, I6A, -7I, V13A, V14I, I17F, V26A, I28L, W41R, V69-, D70-, M71-, G72-, H73-, L74-, R75-, L76-, L77-, D78-, N80D, D81M"}}}]}]}]}]}]}, {"name": "C_NODE_0000031", "node_attrs": {"div": 0.08626999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A73-", "A74-", "T75-", "A76-", "A77-", "A78-", "G79-", "C80-", "T81-", "T82-", "G83-", "C84-", "C85-", "T86-", "T87-", "G88-", "A89-", "G90-", "T91-", "G367A", "G702-", "G703-", "A704-", "A3817G", "T4074A", "T5062G", "C5168A", "T5684C", "G6165C", "G6179A", "-6209A", "T6285A", "G6368A", "G7190A", "G7677A", "A8372-", "A8892C", "T8903C", "T8947A", "T9132C"], "INT": ["F100Y"], "RT-p51": ["H334Q"], "RT-p66": ["H334Q"], "gp120": ["V144E", "A172T", "T371-", "D446N"], "gp41": ["S125N"], "nef": ["K184Q"], "p17": ["G11E"], "vif": ["I159R"], "vpr": ["L22I"]}, "labels": {"aa": "INT: F100Y; RT-p51: H334Q; RT-p66: H334Q; gp120: V144E, A172T, T371-, D446N; gp41: S125N; nef: K184Q; p17: G11E; vif: I159R; vpr: L22I"}}, "children": [{"name": "C_NODE_0000032", "node_attrs": {"div": 0.09038999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A1101G", "T1103C", "G1589A", "C1767T", "C1985G", "G2925A", "G3070A", "T3165G", "A3491G", "A3989G", "A4581G", "T5275C", "T5355G", "C5412T", "T5616-", "-5626G", "A5737G", "T6181-", "C6183-", "A6263C", "A6329-", "T6337-", "A6669G", "A6935C", "G7160-", "A7517G", "C7606T", "G7764A", "T7765G", "T7876A", "A8266C", "G8267A", "G8678A", "C8966-", "T9115C"], "INT": ["I72V", "K269R"], "RT-p51": ["M357R"], "RT-p66": ["R277K", "M357R", "L452I"], "gp120": ["N1S", "-105N", "N160-", "N212T", "K309E", "K361Q"], "gp41": ["M54L", "I72V", "Q119E", "S154K", "V322I"], "nef": ["N51T"], "p24": ["I124V", "S225G"], "p6": ["P30S"], "pro": ["L63V"], "vpr": ["L84V"], "vpu": ["-2L", "-4L", "-5L", "-7V", "-8G", "-9V", "-10G", "K44E"]}, "labels": {"aa": "INT: I72V, K269R; RT-p51: M357R; RT-p66: R277K, M357R, L452I; gp120: N1S, -105N, N160-, N212T, K309E, K361Q; gp41: M54L, I72V, Q119E, S154K, V322I; nef: N51T; p24: I124V, S225G; p6: P30S; pro: L63V; vpr: L84V; vpu: -2L, -4L, -5L, -7V, -8G, -9V, -10G, K44E"}}, "children": [{"name": "GQ999979", "node_attrs": {"div": 0.14175, "accession": "GQ999979", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2005.0}, "Strain_name": {"value": "CAP85_5w_F1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C152T", "G206A", "G224A", "T228A", "A278G", "-280G", "C281A", "T303A", "A354G", "G395A", "T419G", "C426A", "A509G", "A530C", "G554A", "A563G", "A604C", "A606G", "A607G", "G614T", "C618A", "G619A", "G629A", "G667T", "T668G", "A680G", "A691G", "T695-", "G696-", "A697-", "C698-", "-704A", "-705A", "-706C", "-707T", "-708G", "-709G", "-710C", "-711G", "-712G", "-713G", "-714A", "C747A", "G771C", 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"L50S", "S51L"], "p7": ["S4G", "F6I", "K10R"], "pro": ["S12T", "I64M"], "rev": ["R17K", "K30E", "E32R", "K39R", "Q51H", "H53R", "S54E", "P67S", "A68T", "Q74L", "S86N", "S99N", "V102I", "G104R", "G113R", "T114V"], "tat": ["K19I", "A21P", "K24N", "Q76R", "R78Q", "S84A"], "vif": ["Y30H", "K36S", "F39V", "Y44F", "H48N", "V51I", "R92K", "R93G", "D99E", "G101S", "V170A", "G182D"], "vpr": ["E21G", "I22L", "S41G", "I46V", "E48D", "I60L", "I70T"], "vpu": ["-3S", "-6E", "V26T", "I28L", "L33V", "R35K", "K38E", "W41R", "T61I", "M71L", "N80H"]}, "labels": {"aa": "INT: A8V, S17N, I31V, M50I, D167E, N184D, K211R, A265V, R284G, D288N; RT-p51: E40D, T48S, D123S, A173T, E177D, K211R, Q278H, A286T, E312D, Q334N, T369A, V372A, M377T, E413D, A435V; RT-p66: E40D, T48S, D123S, A173T, E177D, K211R, Q278H, A286T, E312D, Q334N, T369A, V372A, M377T, E413D, A435V, K476R, T477A, A508T, R530M; gp120: E19D, V57I, E59G, -106I, -107T, N108S, -111S, -112T, -114I, -115T, -116S, -117T, -118S, -119N, -120I, -121S, -122M, -123N, -124V, E125D, I126M, A133V, K141E, Q142R, K143Q, Y145R, L147F, D157N, N159D, -160I, -161G, S162N, R164S, T172A, S181T, A191T, L237I, E241G, N251D, E262H, E265K, N272G, -308A, K312N, Q315E, R316K, K322G, N334A, T344V, R351Q, Y367V, N369-, -378N, -379G, -380T, -381E, -382G, -383S, -384S, -385T, E401G, M406V, P409N, K418I, -433M, N434T, R448K, D449N, T471N; gp41: V28A, R46K, T94P, A96S, Q108L, E110D, D113G, D129S, T130I, R133S, D137E, N140S, K144R, K147Q, D148E, N156A, I187V, L191I, V197S, R214G, L219R, R221G, R233T, I235V, L242S, A245V, S256F, A268T, R277S, A281T, K283R, I307T, A310V, E320K, V321F, I322L, I325V, R330C, R334T; nef: I20M, A27E, E28G, G29-, D38G, H40Y, A50S, A83G, S88G, E98D, K158Q, H171Q, M173I, K182R, L198K, Y202F; p17: I7V, H28Q, L31I, Q65H, E90A, K91G, E93D, R95K, S111M, A119G, D121T, E122G, -124K; p2: A7V, N8T, -10T, -11N; p24: L6I, A14P, I15L, L83I, M96L, T110N, S120A, D128E, D180E; p6: S3N, T23A, P24H, E34G, L50S, S51L; p7: S4G, F6I, K10R; pro: S12T, I64M; rev: R17K, K30E, E32R, K39R, Q51H, H53R, S54E, P67S, A68T, Q74L, S86N, S99N, V102I, G104R, G113R, T114V; tat: K19I, A21P, K24N, Q76R, R78Q, S84A; vif: Y30H, K36S, F39V, Y44F, H48N, V51I, R92K, R93G, D99E, G101S, V170A, G182D; vpr: E21G, I22L, S41G, I46V, E48D, I60L, I70T; vpu: -3S, -6E, V26T, I28L, L33V, R35K, K38E, W41R, T61I, M71L, N80H"}}}, {"name": "C_NODE_0000033", "node_attrs": {"div": 0.09581999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A418G", "G562A", "-699G", "-700A", "-701A", "A1028T", "A1781-", "T2104C", "C2749T", "C3067T", "A3124G", "C3405T", "T3497A", "G3772A", "T4117C", "T4412C", "G4677A", "T4694G", "T4772A", "C4967T", "G5448A", "T5611-", "A5613-", "G5700A", "T5859G", "T5862G", "G5865-", "A5962G", "A6179-", "A6326-", "A6327-", "T6328-", "T6334-", "G6336-", "A6339-", "A6716G", "G6808T", "A6865-", "T6958-", "A7148-", "A7149-", "A7151-", "A7154-", "A7156-", "A7157-", "A7158-", "T7159-", "A7161-", "A7163-", "C7164-", "A7165-", 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["N8-", "N9-"], "p24": ["A116T", "K154R", "D180E", "D187E", "T200N"], "p6": ["S3N", "P5L", "R16K", "A25T", "P26L", "K27R", "E34-"], "p7": ["S4G", "I12T"], "pro": ["E35D", "I36L", "R57K", "V63A", "M89L"], "rev": ["E10-", "H53D", "D84G", "C85D"], "tat": ["K24Q", "D80N"], "vif": ["V13I", "R17K", "R33K", "R34K", "K50R", "L59V", "E61D", "K67T", "R93K", "I130F", "K158R", "N176E", "R181K"], "vpr": ["Q3R", "P4A", "S41N", "E48Q", "A59V"], "vpu": ["V7A", "G8A", "V9I", "V14L", "I21V", "T61-", "M67-", "V79A"]}, "labels": {"aa": "INT: E10D, E11D, S24N, E25D, F26Y, M50I, I218T, G283D; RT-p51: T35M, E122P, I135V, S162C, A173T, A200E, E204Q, E207D, A286T, I326V, Q334D, M377V, E399D, T403A, D404E, E432D, A435T; RT-p66: T35M, E122P, I135V, S162C, A173T, A200E, E204Q, E207D, A286T, I326V, Q334D, M377V, E399D, T403A, D404E, E432D, A435T, N447S, E449D, S491P, K527R; gp120: V2G, -3R, N5K, E19D, E34V, K35Q, E59A, N64K, I80V, N102S, T104I, N105D, -107K, -109S, -111N, N113-, -114S, -115S, -116R, -117G, A133M, E144A, Y145T, R150K, D157-, N158-, N159-, S162-, S181T, D183E, K203E, T208S, P210L, E240K, I243V, T269I, N272G, I279V, D294E, -308A, E309N, N311T, Q315H, G318S, K319E, K322R, E323A, N334E, S336H, S337-, R351K, Q361G, S365-, T366-, Y367-, N369-, I386-, I396V, M398L, T416I, K418N, N420T, N432-, N434-, N435-, N436-, T437-, G443A, N446D; gp41: R214-, G215-, E225G, I266V, A267T, A270V, V271A, C326G, R330Y, N331H; nef: G3N, S8-, S9-, I10-, V11-, E64-, A83G, E98D, Y102H, E108D, H116N, C163S, Q170L, E174D, E176P, R178G, L198K, K204T; p17: E11G, K15A, H28R, M30Q, L75V, N109K, S111C, A119P, D121A, K123R, V128-; p2: N8-, N9-; p24: A116T, K154R, D180E, D187E, T200N; p6: S3N, P5L, R16K, A25T, P26L, K27R, E34-; p7: S4G, I12T; pro: E35D, I36L, R57K, V63A, M89L; rev: E10-, H53D, D84G, C85D; tat: K24Q, D80N; vif: V13I, R17K, R33K, R34K, K50R, L59V, E61D, K67T, R93K, I130F, K158R, N176E, R181K; vpr: Q3R, P4A, S41N, E48Q, A59V; vpu: V7A, G8A, V9I, V14L, I21V, T61-, M67-, V79A"}}}, {"name": "C_NODE_0000034", "node_attrs": {"div": 0.10454, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C152A", "G157T", "T159G", "-160T", "A286G", "A301T", "A302T", "T305A", "T309-", "A519C", "C540A", "C1490A", "C1491G", "A1586G", "A1700-", "C1867A", "G2182A", "G2273A", "A2311G", "A2362G", "T2737C", "G3382A", "C3649T", "C3665G", "G4561A", "G4685A", "G4769A", "G4779A", "A4817G", "G4839T", "T4840G", "T5095C", "G5131A", "C5251A", "T5354C", "G5355A", "T5568C", "G5711A", "A6173-", "-6211G", "A6277G", "G6280C", "A6488C", "G6526A", "C6613T", "T6631A", "G6638A", "G6653A", "T6658C", "A6733C", "C7018T", "G7132A", "A7133G", "C7134T", "G7197A", "T7400C", "G7552A", "A7630T", "G7807A", "A7964G", "A8032G", "G8158A", "C8320T", "A8337T", "G8354A", "C8489T", "A8494C", "G8531A", "A8594G", "G8864A", "A9009-", "C9113T", "G9120A"], "RT-p51": ["V60I", "D123G"], "RT-p66": ["V60I", "D123G", "I434M", "Q524E"], "gp120": ["T110-", "I173V", "T212H", "H259Q", "E262K", "S263P", "K277R", "P335S", "T427V", "R448K"], "gp41": ["K172R", "R221G", "V321F", "R324G"], "nef": ["I10R", "T23A", "Y120F"], "p17": ["K62Q", "Q69K"], "p2": ["N9S"], "p7": ["P9A"], "rev": ["I18T", "K39R", "T62A", "G104R"], "vif": ["V65I", "V85C", "V170A", "G182D"], "vpr": ["V84I"], "vpu": ["R35K"]}, "labels": {"aa": "RT-p51: V60I, D123G; RT-p66: V60I, D123G, I434M, Q524E; gp120: T110-, I173V, T212H, H259Q, E262K, S263P, K277R, P335S, T427V, R448K; gp41: K172R, R221G, V321F, R324G; nef: I10R, T23A, Y120F; p17: K62Q, Q69K; p2: N9S; p7: P9A; rev: I18T, K39R, T62A, G104R; vif: V65I, V85C, V170A, G182D; vpr: V84I; vpu: R35K"}}, "children": [{"name": "DQ164126", "node_attrs": {"div": 0.14604999999999999, "accession": "DQ164126", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04ZAPS206B1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T153A", "T200C", "T201A", "A222C", "T263A", "A378G", "A379C", "T396C", "C435A", 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Q343*, R357M, R358K, M377L, I434M, A435T; RT-p66: K32R, A36E, E39K, P272A, D324E, Q334N, Q343*, R357M, R358K, M377L, A435T, S554R; gp120: V2G, -3E, -4E, N5K, Y11H, V57F, Q86E, N105A, -106V, -107E, -109K, -110N, -111K, -112T, -123K, -124G, K127Q, L137I, K141E, Q142R, K143Q, P155S, N158E, -160N, -161N, N202D, T204K, T208I, L237V, T255I, V264I, V267M, A291T, G293N, D294I, Q300K, H302Y, -308D, E309A, K312E, K322Y, P326-, N327-, -328N, K332R, N334T, Q361A, -368N, N369G, -370T, -371Y, -372I, -373N, -374E, -375T, -376K, -377S, -378N, -379G, -380T, E401G, P409N, A412E, L424I, -433E, N434D, N435S, N436T, T437N, I439T, G443I, E472R, E479D, E481A; gp41: I4L, F8I, L9V, V28A, S42N, K77Q, T94S, Q108Y, D109N, I124V, N125S, D137I, N140Y, E143D, K144Q, A151S, N156Q, N160S, N166S, I173L, V178I, A243S, S251N, C253S, S256L, H258Q, A268V, I301V, E320A, I322T, Q323L, C326V, I332L, Q345L; nef: S8T, S9K, V11E, V16I, R21T, Q35R, D38E, Q59E, R151K, A156D, M168A, M173I; p17: K15A, H28R, L34I, L46V, A67L, T72S, L75I, E90K, E93D, K103R, A118T, A119K, -124I, -125S, V128-, S129-; p2: M4V, A7S, N8Q, -10S, M14L; p24: L6A, A14V, Q50H, L83T, H87P, M96I, A116T, S120N, V124T, D128E, G225S; p6: T39I; p7: S4G, I12K, K41Q; pro: K43R, T74S; rev: R17K, T18A, S54T, S61V, A68T, V71E, Q74P, P77E, G89S, C107R, T114I; tat: K19T, A21P, Y26F, I45T, P60S, D64G, L68P, P81Q; vif: I31T, V51I, T74P, L81M, I124L, P177S, R183H; vpr: P4L, T19A, A59T, I60L, I61M, I84M, R85P, A89-, S96P; vpu: -3K, -6D, L12F, V14I, V26A, K38R, W41R, L74I, V79G, N80I, D81N"}}}, {"name": "C_NODE_0000035", "node_attrs": {"div": 0.11120999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T467C", "A518G", "A541G", "A604C", "T695G", "A932G", "A989C", "A1022G", "A1340G", "A2080G", "G2392A", "C2467T", "G2914A", "C3100T", "C3307T", "A3667G", "T3754C", "A3866G", "C3922T", "G3997A", "T4656C", "T5313C", "T5442C", "C5579T", "-5620T", "A5644G", "T5645C", "A5680T", "T5787A", "A5788T", "A5792C", "G5794A", "A5795C", 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"V173A", "T174A", "S181N", "Y195C", "H212Q", "S236G", "L249M", "L260F", "N261K", "E265T", "V267N", "N272S", "I279V", "I281L", "K307N", "-308K", "K312R", "R316E", "K322A", "H324Y", "-328R", "K329-", "K332N", "-368Y", "-370S", "-371T", "L388I", "P389Q", "K393R", "I395F", "E401K", "R404K", "K418E", "N432P", "N436A", "T437A"], "gp41": ["V7L", "I24L", "R46Q", "Q66R", "K77R", "L91F", "Q108E", "E110Y", "D113G", "R122K", "N125E", "N140I", "A151E", "D163S", "N166H", "T210I", "L219P", "G220R", "Q229P", "I235V", "F263C", "A267V", "A270V", "V271L", "F321Y", "R327N", "I329F", "P333H", "R334-"], "nef": ["K4N", "R10A", "-12G", "A15N", "E24R", "G29R", "G31Q", "A32-", "A33-", "S34-", "Q35-", "D36-", "L37-", "D38-", "K39-", "H40-", "G41-", "T48-", "A49-", "A50-", "T51-", "N52-", "A53-", "D54-", "C55-", "A56-", "W57-", "L58-", "Q59-", "A60-", "Q61-", "H116N", "R151E", "N162K", "S169H"], "p1": ["H9Q"], "p17": ["K15N", "K18R", "M30R", "I61M", "Q62V", "K69R", "L85I", "N109K", "K114N", "A119K", "D121A", "E122N", "K123E", "-124K", "Y132F"], "p2": ["A7T", "N8Q", "S9H", "-10N"], "p24": ["H87Q", "K154R", "F161-"], "p6": ["S3N", "F17S", "R33K", "S40A", "K42R"], "p7": ["K33E", "E51N"], "pro": ["V63L"], "rev": ["E32K", "R38Q", "H53R", "S54E", "I78L", "G89A", "V102I"], "tat": ["N7S", "Y26F", "H29R", "T40K", "I69V", "P75S", "R78Q", "S84P"], "vif": ["I31T", "R33K", "G37N", "F39V", "K67T", "T74P", "R93K", "I124L", "N176K", "P177S", "H187L"], "vpr": ["P4V", "H40N", "S41N", "G43N", "Q44-", "Y45-", "I46-", "Y47-", "T49I"], "vpu": ["-3N", "V14A", "I18L", "V22A", "S65A", "G72D", "H73M", "L74G", "R75N", "L77R", "D78L", "V79L", "N80D", "L82I"]}, "labels": {"aa": "INT: E25D, I84V, K156N, R187K, D253E; RT-p51: E39D, L234P, Q245K, D324E, R358K, T359A, I434M; RT-p66: E39D, L234P, Q245K, D324E, R358K, T359A, S554K; gp120: -3G, -4E, K18R, T22A, Q54L, Q86E, N102S, -106V, -107N, -109K, -110D, -111N, -112T, N113T, -114C, R138K, Q142N, R150K, N159-, S162-, V173A, T174A, S181N, Y195C, H212Q, S236G, L249M, L260F, N261K, E265T, V267N, N272S, I279V, I281L, K307N, -308K, K312R, R316E, K322A, H324Y, -328R, K329-, K332N, -368Y, -370S, -371T, L388I, P389Q, K393R, I395F, E401K, R404K, K418E, N432P, N436A, T437A; gp41: V7L, I24L, R46Q, Q66R, K77R, L91F, Q108E, E110Y, D113G, R122K, N125E, N140I, A151E, D163S, N166H, T210I, L219P, G220R, Q229P, I235V, F263C, A267V, A270V, V271L, F321Y, R327N, I329F, P333H, R334-; nef: K4N, R10A, -12G, A15N, E24R, G29R, G31Q, A32-, A33-, S34-, Q35-, D36-, L37-, D38-, K39-, H40-, G41-, T48-, A49-, A50-, T51-, N52-, A53-, D54-, C55-, A56-, W57-, L58-, Q59-, A60-, Q61-, H116N, R151E, N162K, S169H; p1: H9Q; p17: K15N, K18R, M30R, I61M, Q62V, K69R, L85I, N109K, K114N, A119K, D121A, E122N, K123E, -124K, Y132F; p2: A7T, N8Q, S9H, -10N; p24: H87Q, K154R, F161-; p6: S3N, F17S, R33K, S40A, K42R; p7: K33E, E51N; pro: V63L; rev: E32K, R38Q, H53R, S54E, I78L, G89A, V102I; tat: N7S, Y26F, H29R, T40K, I69V, P75S, R78Q, S84P; vif: I31T, R33K, G37N, F39V, K67T, T74P, R93K, I124L, N176K, P177S, H187L; vpr: P4V, H40N, S41N, G43N, Q44-, Y45-, I46-, Y47-, T49I; vpu: -3N, V14A, I18L, V22A, S65A, G72D, H73M, L74G, R75N, L77R, D78L, V79L, N80D, L82I"}}}, {"name": "MF109607", "node_attrs": {"div": 0.15163, "accession": "MF109607", "clade_membership": {"value": "C"}, "country": {"value": "GB"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14727_1_42.3"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C365G", "A367G", "C417T", "T419C", "C435A", "G452A", "A508G", "A512G", "A516T", "A540G", "A606G", "A607G", "G686A", "A691C", "A692G", "A700G", "G716A", "T777A", "G815A", "T824C", "G836A", "T974C", "G1031A", "G1139A", "C1220T", "C1229T", "G1232A", "C1292A", "G1313A", "G1328A", "G1339A", "A1346G", "A1349G", "G1354C", "G1355A", "A1359T", "A1450G", "A1458-", "C1460A", "G1469A", "T1481C", "G1562A", "C1610A", "G1619A", "G1622A", "G1640A", "T1646C", "C1693-", "A1694-", "G1695-", "A1696-", "G1697-", "C1698-", "C1699-", "A1701-", "C1702-", "A1703-", "G1704-", "C1705-", "C1706-", "C1707-", "C1708-", "A1709-", "C1710-", "C1711-", "A1712-", "G1713-", "C1714-", "A1715-", "G1716-", "A1717-", "G1720T", "G1726A", "C1751T", "G1760A", "G1779-", "A1780-", "-1786A", "-1787A", "G1846A", "C1849T", "G1852A", "G1912A", "A1921G", "T1987C", "A2059G", "A2063T", "A2140G", "G2221A", "A2286G", "G2290A", "C2353T", "G2413T", "G2470A", "A2482C", "A2509G", "A2512T", "G2578A", "A2592G", "C2605T", "A2611G", "G2704A", "A2715G", "C2828G", "C2831T", "G2869A", "C2890T", "C2909G", "A2925G", "C2927T", "A2928G", "A2929C", "A2962G", "G3010A", "T3097A", "T3112C", "A3130T", "A3136G", "G3166A", "T3172A", "G3173A", "A3190G", "T3197C", "G3205A", "G3250A", "T3253C", "A3280G", "A3283G", "T3349C", "C3380T", "G3385A", "A3388G", "A3442T", "G3487A", "G3494A", "C3500G", "A3592T", "T3602C", "T3644A", "C3652T", "G3684A", "G3685A", "C3688A", "C3691T", "T3721A", "G3796A", "C3826T", "G3850A", "T3853C", "T3856C", "C3865T", "A3901G", "T3904C", "T3909A", "G3925A", "A3955C", "C4042T", "A4051G", "T4085C", "G4131C", "G4145A", "C4181A", "T4240C", "A4420G", "T4428C", "A4495G", "A4498T", "G4583C", "G4623A", "T4640C", "T4715C", "C4724T", "G4737A", "C4757T", "G4765A", "A4769T", "G4774A", "A4787G", "C4841T", "C4937A", "A4950C", "A4958T", "C4988A", "T5006C", "T5043C", "A5058C", "A5113G", "A5119G", "T5209C", "A5215C", "T5237C", "C5275T", "T5356C", "G5363A", "G5370A", "G5386A", "G5403A", "A5448T", "C5463T", "C5479T", "G5538A", "G5543-", "A5544-", "A5556T", "A5576C", "A5594G", "-5600G", "-5601T", "-5602A", "A5607-", "A5608-", "T5609-", "G5610-", "T5612-", "A5614-", "A5615-", "T5617-", "A5623G", "G5624C", "A5625G", "A5628G", "A5656G", "A5664T", "A5668T", "T5704C", "A5720G", "G5775A", "G5784T", "G5791T", "G5808-", "-5811G", "T5817A", "G5856A", "G5861A", "G5863A", "G5864-", "A5866-", "T5871C", "C5884A", "T5980C", "C6145T", "A6158G", "C6160A", "T6163C", "A6176-", "A6177-", "T6178-", "A6182-", "T6184-", "A6185-", "T6187-", "A6188-", "A6192T", "-6198G", "-6201A", "-6202T", "-6203G", "-6205G", "-6207C", "-6208T", "-6210A", "-6225A", "A6226G", "A6232G", "A6276G", "A6279G", "C6280A", "G6323-", "A6324-", "T6325-", "A6330-", "A6332-", "A6335-", "A6338-", "T6343C", "T6385C", "A6388G", "T6424C", "G6425A", "T6436G", "G6451A", "C6469T", "C6499T", "A6535G", "A6553G", "C6563A", "G6572A", "T6598C", "A6605G", "G6611A", "C6612T", "A6668G", "G6669C", "G6725A", "C6729A", "A6730T", "G6732A", "C6752A", "C6758T", "T6763C", "A6764T", "A6765T", "G6771A", "A6773G", "A6777G", "G6779C", "A6780T", "A6788G", "A6799C", "A6800C", "G6806A", "G6818A", "-6830C", "-6831C", "-6832A", "C6833A", "C6834A", "A6836-", "A6837-", "T6838-", "A6854C", "A6856G", "T6863-", "C6864-", "T6892C", "C6895T", "C6925T", "A6947-", "G6948-", "T6949-", "A6950-", "C6951-", "A7007-", "G7076A", "C7077A", "C7124A", "A7144T", "A7155-", "G7182C", "A7216G", "A7231G", "A7306-", "G7309A", "C7344T", "T7386C", "C7400G", "G7477A", "G7517A", "A7532C", "T7588C", "G7589T", "A7626T", "G7628A", "G7640-", "T7666G", "A7689G", "C7692T", "A7700C", "G7701A", "A7713T", "A7753G", "A7771G", "A7773G", "T7801G", "G7818A", "G7846A", "G7883A", "T7913C", "G7997A", "A7998G", "T8016C", "A8029G", "G8030T", "C8037T", "C8038G", "C8047T", "G8050A", "T8060A", "G8079A", "C8112G", "A8128G", "C8183T", "A8284G", "A8297C", "G8304C", "-8369C", "-8373A", "-8374A", "-8375A", "G8376A", "A8402G", "A8403G", "G8404A", "G8407-", "A8408-", "C8410-", "T8411-", "G8414-", "C8415-", "C8416-", "A8417-", "G8418-", "C8419-", "A8420-", "G8421-", "C8422-", "A8458G", "G8516A", "G8517C", "A8531-", "G8532-", "C8543T", "A8591C", "C8603A", "A8636T", "T8645C", "A8652C", "T8690C", "A8729G", "T8770A", "A8823G", "A8844C", "A8858G", "G8861A", "G8868A", "G8882A", "T8883C", "G8945A", "A8952-", "A8953-", "A8954-", "G8955-", "A8956-", "C8957-", "T8958-", "G8959-", "T8961-", "G8962-", "A8963-", "A8965-", "A8967-", "G8968-", "A8969-", "A8980-", "G8981-", "G8982-", "G8983-", "A8984-", "C8985-", "T8986-", "T8987-", "T8988-", "C8989-", "C8990-", "G8991-", "C8992-", "T8993-", "G8994-", "G8995-", "G8996-", "A8998-", "C8999-", "T9000-", "T9001-", "T9002-", "C9003-", "C9004-", "A9005-", "C9006-", "G9008-", "G9010-", "G9011-", "C9012-", "G9013-", "T9014-", "G9015-", "G9016-", "T9017-", "C9018-", "T9019-", "G9020-", "G9021-", "G9022-", "C9023-", "G9024-", "G9025-", "G9026-", "A9027-", "C9028-", "T9029-", "G9030-", "G9031-", "G9032-", "A9034-", "G9035-", "T9036-", "G9037-", "G9038-", "T9039-", "C9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "T9060-", "A9061-", "A9062-", "G9063-", "C9064-", "A9065-", "G9066-", "C9067-", "T9068-", "G9069-", "C9070-", "T9071-", "T9072-", "T9073-", "T9074-", "C9075-", "G9076-", "C9077-", "C9078-", "T9079-", "G9080-", "T9081-", "T9088A"], "INT": ["L45Q", "M50I", "S119T", "A124T", "Q136K", "I218T", "D270H", "G283D"], "RT-p51": ["K64R", "K166R", "E207G", "Q245E", "P272A", "K277R", "Q278C", "A360T"], "RT-p66": ["K64R", "K166R", "E207G", "Q245E", "P272A", "K277R", "Q278C", "A360T", "M434I", "E449D", "V467I", "L469V", "L517I", "R530K"], "gp120": ["V2-", "N5-", "L6-", "N102E", "N108-"], "nef": ["R10K", "V11R", "I20M", "R21E", "R22-", "A23-", "E24-", "P25-", "A26-", "A27-"], "p17": ["E11G", "H28C", "L34I", "K58R", "I61L", "K69G", "K91G", "E122G", "K123-"], "p24": ["S16T", "D187E", "R203K", "G208A", "T210S"], "p6": ["E6-", "P7-", "T8-", "A9-", "P10-", "P11-", "A12-", "E13-"], "p7": ["M1I", "D48E"], "pro": ["M89L"], "rev": ["S8N", "E10-"], "tat": ["V4I"], "vif": ["V13I", "V51I", "G60E", "E61D", "R63K", "E78D", "D117E", "K122Q", "D134E", "K158Q", "N176S", "Q178R"], "vpr": ["Y45H", "I84T", "A89T", "S94N"], "vpu": ["I17V", "I21F", "V26A", "K38R", "D70E"]}, "labels": {"aa": "INT: L45Q, M50I, S119T, A124T, Q136K, I218T, D270H, G283D; RT-p51: K64R, K166R, E207G, Q245E, P272A, K277R, Q278C, A360T; RT-p66: K64R, K166R, E207G, Q245E, P272A, K277R, Q278C, A360T, M434I, E449D, V467I, L469V, L517I, R530K; gp120: V2-, N5-, L6-, N102E, N108-; nef: R10K, V11R, I20M, R21E, R22-, A23-, E24-, P25-, A26-, A27-; p17: E11G, H28C, L34I, K58R, I61L, K69G, K91G, E122G, K123-; p24: S16T, D187E, R203K, G208A, T210S; p6: E6-, P7-, T8-, A9-, P10-, P11-, A12-, E13-; p7: M1I, D48E; pro: M89L; rev: S8N, E10-; tat: V4I; vif: V13I, V51I, G60E, E61D, R63K, E78D, D117E, K122Q, D134E, K158Q, N176S, Q178R; vpr: Y45H, I84T, A89T, S94N; vpu: I17V, I21F, V26A, K38R, D70E"}}}]}]}]}]}, {"name": "C_NODE_0000036", "node_attrs": {"div": 0.08810999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["-1459A", "A2032G", "T4537C", "T5237C", "-5620C", "G5707T", "-6331C", "-6333C", "A6338G", "C6758T", "-7009C", "G7589A", "G7995A", "G9030A", "-9033G"], "RT-p66": ["V466I"], "gp120": ["-161S", "H302Y"], "gp41": ["A96N", "E110D", "R231K", "Q345L"], "nef": ["Y120F"], "p17": ["E122D"], "tat": ["L68P"], "vif": ["K36S"], "vpr": ["Y45H"], "vpu": ["V34L"]}, "labels": {"aa": "RT-p66: V466I; gp120: -161S, H302Y; gp41: A96N, E110D, R231K, Q345L; nef: Y120F; p17: E122D; tat: L68P; vif: K36S; vpr: Y45H; vpu: V34L"}}, "children": [{"name": "C_NODE_0000037", "node_attrs": {"div": 0.09516999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A691C", "A692G", "T1511C", "G1543A", "T1676C", "A1691G", "C1714T", "G1752A", "A1908G", "A2113G", "A2362G", "G3292A", "A3449C", "G3487A", "G3756A", "T3757G", "A4693G", "T4799G", "T5355-", "A5444C", "T5599G", "-5600T", "A5614G", "-5626A", "A5689C", "A5718G", "A5734G", "G5856A", "G5865A", "-6174A", "-6175T", "T6187A", "A6192T", "-6198A", "-6203A", "-6215A", "-6221A", "-6223T", "-6225A", "A6263C", "A6283G", "G6303A", "A6326G", "A6327G", "C6487T", "G6572A", "C6745T", "G6771A", "A6777G", "A6800C", "A6856C", "C6857T", "-6952A", "-6953T", "-6954A", "-6955C", "-6956T", "-6959A", "-6960A", "-6961T", "-6963G", "-6964T", "-6966C", "-6967A", "-6968G", "-6971A", "-6973T", "-6975C", "-6976T", "-6980A", "-6982T", "-6984C", "-7150T", "A7155C", "T7170C", "T7267C", "C7590A", "A7627T", "A7782G", "C8037T", "G8188A", "T8387A", "A8458G", "A8468G", "G8490A", "A8503C", "A8522G", "T8651C", "G8852A"], "RT-p66": ["S554K"], "gp120": ["-111N", "R150K", "N158G", "S162E", "E240K", "R316Q", "P335S", "I439T"], "gp41": ["N160S", "N239S", "V321L"], "nef": ["K39R", "A50T", "D54A"], "p6": ["A25T"], "p7": ["R26K"], "pro": ["N37S"], "tat": ["N23T", "H29R"]}, "labels": {"aa": "RT-p66: S554K; gp120: -111N, R150K, N158G, S162E, E240K, R316Q, P335S, I439T; gp41: N160S, N239S, V321L; nef: K39R, A50T, D54A; p6: A25T; p7: R26K; pro: N37S; tat: N23T, H29R"}}, "children": [{"name": "KT183253", "node_attrs": {"div": 0.14533999999999997, "accession": "KT183253", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2007.0}, "Strain_name": {"value": "503_10430_2"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C365G", "A367G", "A378G", "A379C", "A388G", 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"G3494A", "T3497A", "A3511C", "G3520A", "A3535C", "T3541C", "T3613C", "T3644C", "C3652T", "A3667G", "T3668C", "G3952A", "T3967C", "G4036A", "A4112C", "T4144C", "G4145A", "C4146A", "A4150T", "C4162T", "C4181A", "T4198C", "C4258T", "T4276C", "G4285A", "G4446A", "T4474C", "A4581G", "G4623A", "T4670C", "A4683C", "A4688G", "T4701G", "A4717T", "G4769T", "G4774T", "A4805G", "T4826C", "G4859A", "G4864A", "T4868C", "C4883T", "A4900G", "T4907C", "C4937A", "A4950C", "C4965A", "C4967T", "T4975C", "C4988A", "A5090G", "T5095C", "T5102C", "A5112G", "C5114G", "A5168C", "C5171T", "T5275C", "A5293T", "T5313C", "G5336A", "T5339C", "T5356-", "G5357-", "G5359A", "G5363A", "A5453T", "C5461A", "C5463A", "C5472T", "C5479T", "T5490C", "C5513A", "G5538A", "G5563A", "A5581G", "T5584C", "-5601G", "-5602G", "T5611G", "A5619C", "C5620T", "T5621C", "T5645C", "T5648C", "C5653T", "G5673A", "C5684T", "G5700A", "C5769T", "G5775C", "G5781T", "G5784A", "T5787C", "T5789C", "A5790G", "A5793G", "A5797T", "-5799G", "-5800G", 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"A6819T", "A6849T", "T6863G", "A6881G", "A6900T", "C6919T", "A6935G", "A6936G", "A6937T", "T6949A", "-6957C", "-6962A", "-6965G", "-6969A", "-6970C", "-6972G", "-6974A", "-6977T", "-6978C", "-6979A", "-6981A", "-6983T", "-6985A", "-7008C", "C7012T", "C7016A", "G7026A", "A7040G", "A7066G", "A7069G", "C7078T", "G7088A", "C7089A", "A7095G", "C7096T", "A7099C", "A7108T", "A7113C", "C7136A", "T7138G", "A7144T", "A7147T", "-7152C", "-7153A", "A7157G", "A7158G", "-7162G", "A7177G", "T7222C", "A7268G", "A7312G", "A7313C", "G7366A", "G7369A", "G7390A", "G7477A", "A7504G", "C7511T", "G7608C", "T7622A", "C7625T", "G7628A", "A7630G", "T7642C", "A7676G", "G7688T", "A7714C", "G7717A", "A7722C", "A7733C", "A7744G", "T7757C", "G7764A", "T7765G", "A7771T", "G7777T", "A7796T", "T7801C", "A7855G", "T7913C", "G7915A", "G7918A", "C7932T", "T7959C", "C7960T", "A7964G", "A8032G", "C8033A", "A8086G", "C8092T", "A8093C", "T8097C", "G8098A", "A8099G", "C8106T", "C8112T", "G8137A", "C8146T", "G8152A", "C8183T", "G8208A", "C8232T", "G8254A", "A8255G", "T8268C", "G8317A", "T8323G", "G8327A", "C8328G", "A8329C", "G8330A", "C8331T", "-8369C", "-8370C", "-8372A", "G8385A", "G8388A", "A8393G", "A8396C", "A8402G", "C8406A", "A8409G", "G8412C", "G8436A", "A8441G", "A8461G", "A8465G", "C8469T", "A8475G", "G8476T", "G8479A", "G8487C", "C8492T", "T8646C", "A8652C", "A8656G", "G8678A", "C8688A", "G8729A", "C8771T", "G8774A", "A8798G", "A8823G", "A8870T", "C8873A", "G8875A", "A8882C", "C8892G", "A8893T", "G8902T", "G8905A", "G8914A", "A8916C", "G8917A", "A8918C"], "INT": ["I113L", "A124N", "Q136K", "R224Q", "K269R", "G283D"], "RT-p51": ["A98S", "E177D", "K211G", "K277R", "D291E", "K311R", "Q334H", "M357L", "M377Q", "T400I"], "RT-p66": ["A98S", "E177D", "K211G", "D291E", "K311R", "Q334H", "M357L", "M377Q", "T400I", "V467I", "S468T", "Q480H"], "gp120": ["V3G", "G4E", "N5K", "V40I", "-105N", "-106N", "-107I", "-109T", "N113-", "-120I", "-121T", "-122T", "-123N", "-124E", "I126L", "A133V", "K141R", "Q142R", "I153V", "D157G", "N159S", "N160P", "T170S", "T208K", "T250N", "N251D", "A253G", "V264I", "E265N", "T288A", "Y290F", "D294E", "Q300K", "Y302N", "N304T", "S306N", "K307E", "-308S", "K312N", "Q315R", "G318K", "K319D", "K322L", "K332I", "S337A", "I343V", "N349I", "K361G", "S365R", "-368S", "-370S", "-371A", "-372D", "-373S", "-374T", "-375S", "-376N", "-377S", "-385T", "L388I", "R391K", "I396V", "A412K", "N414S", "K418N", "N420T", "-433T", "N434T", "N435G", "N436E", "K472E"], "gp41": ["I4L", "S102T", "S107T", "Q108Y", "D109K", "N125D", "D129Y", "N140T", "K144Q", "S154K", "T165S", "T210I", "L219P", "R221G", "L244I", "A245V", "I264L", "L265S", "I266V", "A268V", "A270V", "S302N", "A310V", "I318V", "V322A", "F340L"], "nef": ["I10L", "A15T", "V16I", "E18D", "I20M", "T23A", "E24Q", "A32T", "H40R", "L43F", "S45V", "S46N", "A49P", "Y102H", "K104Q", "K105R", "E108D", "H116N", "N161D", "E176D", "D177E", "R178K", "Q184V", "S187I", "S188N", "R191H", "R192H"], "p1": ["W6R"], "p17": ["E11G", "K15A", "K18R", "R20K", "K62R", "E90S", "K91N", "E93Q", "R95C", "A119K", "D121A", "-124I", "-125S", "V128-", "S129-"], "p2": ["-10P", "-11H"], "p24": ["L6A", "Q13T", "A14P", "S16T", "A31N", "V91I", "D128E", "T210S"], "p6": ["A12M", "T23P", "P30Q", "-35T", "P37-"], "p7": ["S4N", "V13I", "T50N"], "pro": ["K20R", "P39S", "K45R"], "rev": ["S8N", "R38W", "K39R", "T62D", "R80G", "H82S", "D84S", "V97M", "P100S", "V102I", "S112F"], "tat": ["Y26F", "R29K", "S46Y", "E63K", "I69V", "S70P", "P75S", "S84L"], "vif": ["V13I", "F39V", "Y44F", "E61D", "R63I", "R93K", "Q105R", "D117E", "K122Q", "H127N", "I130T", "D134E", "V170A", "N176E"], "vpr": ["Q3R", "P4A", "I22L", "I70T", "L84Q", "R85-"], "vpu": ["-10V", "I13T", "V14A", "I28L", "I43V", "E56D", "E58D", "S65A", "V79A", "L82V"]}, "labels": {"aa": "INT: I113L, A124N, Q136K, R224Q, K269R, G283D; RT-p51: A98S, E177D, K211G, K277R, D291E, K311R, Q334H, M357L, M377Q, T400I; RT-p66: A98S, E177D, K211G, D291E, K311R, Q334H, M357L, M377Q, T400I, V467I, S468T, Q480H; gp120: V3G, G4E, N5K, V40I, -105N, -106N, -107I, -109T, N113-, -120I, -121T, -122T, -123N, -124E, I126L, A133V, K141R, Q142R, I153V, D157G, N159S, N160P, T170S, T208K, T250N, N251D, A253G, V264I, E265N, T288A, Y290F, D294E, Q300K, Y302N, N304T, S306N, K307E, -308S, K312N, Q315R, G318K, K319D, K322L, K332I, S337A, I343V, N349I, K361G, S365R, -368S, -370S, -371A, -372D, -373S, -374T, -375S, -376N, -377S, -385T, L388I, R391K, I396V, A412K, N414S, K418N, N420T, -433T, N434T, N435G, N436E, K472E; gp41: I4L, S102T, S107T, Q108Y, D109K, N125D, D129Y, N140T, K144Q, S154K, T165S, T210I, L219P, R221G, L244I, A245V, I264L, L265S, I266V, A268V, A270V, S302N, A310V, I318V, V322A, F340L; nef: I10L, A15T, V16I, E18D, I20M, T23A, E24Q, A32T, H40R, L43F, S45V, S46N, A49P, Y102H, K104Q, K105R, E108D, H116N, N161D, E176D, D177E, R178K, Q184V, S187I, S188N, R191H, R192H; p1: W6R; p17: E11G, K15A, K18R, R20K, K62R, E90S, K91N, E93Q, R95C, A119K, D121A, -124I, -125S, V128-, S129-; p2: -10P, -11H; p24: L6A, Q13T, A14P, S16T, A31N, V91I, D128E, T210S; p6: A12M, T23P, P30Q, -35T, P37-; p7: S4N, V13I, T50N; pro: K20R, P39S, K45R; rev: S8N, R38W, K39R, T62D, R80G, H82S, D84S, V97M, P100S, V102I, S112F; tat: Y26F, R29K, S46Y, E63K, I69V, S70P, P75S, S84L; vif: V13I, F39V, Y44F, E61D, R63I, R93K, Q105R, D117E, K122Q, H127N, I130T, D134E, V170A, N176E; vpr: Q3R, P4A, I22L, I70T, L84Q, R85-; vpu: -10V, I13T, V14A, I28L, I43V, E56D, E58D, S65A, V79A, L82V"}}}, {"name": "GQ999986", "node_attrs": {"div": 0.14151999999999998, "accession": "GQ999986", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2005.0}, "Strain_name": {"value": "CAP244_8w_F1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C185A", "G186A", "G224A", "T263G", "A278G", "-280G", "C281-", "A302T", "T305A", "G407A", "A412G", "C417A", "A418G", "T419G", "T424G", "C426A", "C435T", "C540A", "C590A", "G608A", "A617G", "A666T", "-699A", "-700A", "-701A", "-702G", "-703G", "-704T", 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"T3526C", "G3544A", "C3545T", "T3559A", "T3566C", "C3577T", "T3628C", "A3676C", "G3685A", "G3686A", "A3706G", "A3751G", "A3787G", "A3814G", "A3866G", "T3904C", "T3946C", "A3989G", "T4073C", "T4075G", "C4079T", "A4087G", "C4123T", "G4267A", "G4268A", "A4376T", "C4381T", "G4388A", "C4569T", "A4650C", "T4674C", "G4677A", "G4687A", "A4736G", "C4757A", "G4766A", "G4769A", "A4786C", "G4861A", "T4910C", "A4974T", "T4976C", "G5099A", "G5134A", "G5140A", "G5167A", "T5170C", "G5176A", "C5182T", "A5215C", "G5226A", "T5228C", "A5236G", "A5247C", "T5260C", "A5272G", "A5278G", "A5282C", "A5284G", "A5293G", "G5336C", "-5355A", "C5412G", "A5431C", "G5437C", "A5446T", "A5447C", "G5448A", "A5462G", "A5496C", "C5508A", "T5562C", "G5565A", "A5567G", "T5568C", "-5601A", "A5607T", "T5609A", "A5613T", "A5615C", "T5617A", "T5621A", "A5625T", "A5631G", "G5643A", "A5644G", "G5647A", "A5656T", "A5659T", "T5674C", "T5708C", "G5717A", "C5727T", "A5739G", "T5745A", "G5781A", "T5787A", "A5788T", "G5791T", "A5792C", 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gp120: N5Q, D29N, E59G, Q86E, N102I, N108-, T110-, -112V, -114H, -115S, -116S, -117T, -118R, -119E, F131Y, A133S, R138W, L156I, D157N, N160A, T174K, S181T, D183E, K203Q, N206D, N212T, R245S, T255I, N261K, E262D, S263P, E265R, S306D, -308G, K309A, K322Q, N327G, S365N, -368Y, -370G, -371T, -372G, -378N, -379A, -380N, -381S, -382T, -383H, -384E, -385N, N397R, E401K, R404Q, K418T, T427V, N432E, -433A, T437I, N446D, K464Q; gp41: V7M, I24M, T25A, A30S, Q66R, L70V, I72L, K77Q, K106R, Q108A, D110-, M115L, D121E, R122K, R133Q, D137E, N140I, K147Q, D153N, N156D, N157S, D163S, N166K, V178I, G220E, E225G, A245I, V271A, S287N, I301V, R324A, C326G, R334T; nef: G3N, S8C, S9-, I10-, V11-, R22Q, A27E, E28G, G29-, A32P, D38A, A49V, R151A, E152D, A156S, N157S, S169N, M173T, K182Q, S188L, A190G, L198K, Y203F; p17: K26R, H28R, M30R, L31I, Q69K, S111C; p2: N9S, -10N; p24: A116N, S120A, V191I, S225G; p6: L1F, S3N, A12V, F15S, F17P, -18G, -19F, E20K, K27R, P30T, K31R, T39I, S47N; p7: S4G, T50S; pro: I19T, E35D, K43R; rev: V16A, R17K, I18A, R50G, C63Y, A68T, L73F, S99G, K115E; tat: N12K, K19Q, A21P, K24S, D64G, P81Q, E85K; vif: N22H, Y30H, V31I, R34K, K67T, R92K, I130F, R183H, G185E; vpr: S41N, E48A, I60L, I63M, Q77H, L84M; vpu: M1K, -2F, -3A, -4I, -5Q, -6S"}}}]}, {"name": "C_NODE_0000038", "node_attrs": {"div": 0.09355999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C435A", "A518G", "G770A", "C1491T", "T2129C", "A2131G", "G2273A", "G2578A", "C2615A", "A3224T", "A3451G", "T3712C", "C4569T", "C4757A", "A5225G", "A5236G", "C5351A", "G5437C", "T5451C", "G5548A", "T5568C", "T5641C", "G5647A", "A5668G", "C5678T", "G6022A", "-6170G", "-6171T", "-6180A", "-6186A", "G6251A", "T6328G", "-6340C", "A6488C", "A6573G", "A6574G", "T6631C", "T6958-", "-6986A", "-6988T", "-6989G", "-6992A", "-6993C", "-7001A", "-7002A", "G7197A", "T7325C", "T7400C", "G7441A", "A7553C", "G7628A", "A7629C", "G8079A", "G8113A", "G8267A", "C8460T", "G8490C", "C8491A", "C8873A", 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"T8645C", "C8666A", "C8690T", "A8693G", "G8729A", "T8786G", "A8819G", "T8832C", "A8859C", "G8861A", "A8870T", "A8873G", "G8902C", "A8947G", "T8948G", "G9007T", "T9109A", "A9131G", "G9137T"], "INT": ["E11D", "S17N", "I60V", "G70E", "I72V", "D167E", "D286N", "D288N"], "RT-p51": ["D123G", "I142V", "T165I", "K166R", "E207A", "K211R", "F214L", "D250G", "Q278R", "R284K", "Q334E", "M357R", "M377L", "T400I"], "RT-p66": ["D123G", "I142V", "T165I", "K166R", "E207A", "K211R", "F214L", "D250G", "R277K", "Q278R", "R284K", "Q334E", "M357R", "T400I", "T450N", "T470S", "S491P", "L517I"], "gp120": ["R1K", "N5-", "K35R", "M56I", "E59G", "W68R", "N102T", "T104G", "D105E", "-107R", "-109N", "-111Y", "-112N", "-114T", "-115I", "-116T", "E125-", "I126-", "K127-", "T133I", "I137V", "K143T", "N159D", "Y163S", "R164K", "T170S", "I173V", "A253I", "E262R", "T288A", "K307E", "-308A", "K309D", "K312R", "K316E", "E322G", "K332Q", "P335A", "E342G", "-368M", "N369P", "-370N", "-373S", "-374T", "-375Y", "-376M", 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"R93G", "H110Y", "H127Q", "R132K", "Q136P", "N140T", "R159I", "R167K", "T180I"], "vpr": ["H45Y", "I70T", "L84V", "A89T", "A93S", "S94N", "S96P"], "vpu": ["R37K", "K38R", "I43V"]}, "labels": {"aa": "INT: E11D, S17N, I60V, G70E, I72V, D167E, D286N, D288N; RT-p51: D123G, I142V, T165I, K166R, E207A, K211R, F214L, D250G, Q278R, R284K, Q334E, M357R, M377L, T400I; RT-p66: D123G, I142V, T165I, K166R, E207A, K211R, F214L, D250G, R277K, Q278R, R284K, Q334E, M357R, T400I, T450N, T470S, S491P, L517I; gp120: R1K, N5-, K35R, M56I, E59G, W68R, N102T, T104G, D105E, -107R, -109N, -111Y, -112N, -114T, -115I, -116T, E125-, I126-, K127-, T133I, I137V, K143T, N159D, Y163S, R164K, T170S, I173V, A253I, E262R, T288A, K307E, -308A, K309D, K312R, K316E, E322G, K332Q, P335A, E342G, -368M, N369P, -370N, -373S, -374T, -375Y, -376M, -377H, -378N, -379A, -380T, -381E, -382S, -383N, -384A, -385N, L388I, A412V, T416M, L424V, T427V, -433T, N435G, N436T, T437-, I439T, I468V, R476K; gp41: A14T, A67T, N96T, N125S, K144Q, N156K, N160S, D163S, I193L, T210I, N212H, D232G, I235V, N239S, A268V, S287N, K298G, S299R, R317G, R330C, I332M, L345Q; nef: I10M, V16I, I20M, E28D, S45I, S46N, A49T, Y81F, M173L, E176D, S187T, Y202W; p17: K26R, I61M, K62S, Q69K, N109K, S111C, A120D, D121G, D122K, G123-; p2: N9S, -10N, M14L; p24: N5D, L6V, A116T, L136M, T210S, S225G; p6: P30T, R33G, -35T, P37-; pro: V15I, L24F, E35D, D60E, L63A; rev: V16A, T18A, K30T, H53R, S54A, S67L, A68E, T114A, K116R; tat: E2D, V4I, K19E, L35Q, Q39L, Y47N, D64G, I69L, P75S, Q76H; vif: V7A, R17K, T20A, L59I, D78E, R93G, H110Y, H127Q, R132K, Q136P, N140T, R159I, R167K, T180I; vpr: H45Y, I70T, L84V, A89T, A93S, S94N, S96P; vpu: R37K, K38R, I43V"}}}, {"name": "C_NODE_0000039", "node_attrs": {"div": 0.09683999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "A354G", "G614T", "-702G", "-703G", "-704A", "C767T", "T788C", "A1192G", "-1452A", "-1454A", "G3925A", "G4684A", "A5051G", "G5087A", "A5282C", "C5653T", 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["A379G", "C426T", "G603A", "T978G", "C1767T", "A2362G", "T3097G", "C3294T", "G5706A", "T6101A", "-6212A", "G6336A", "T6395A", "A6406G", "A6583C", "A6777C", "G6779A", "A6937G", "-6987A", "-6999A", "-7003T", "A7155C", "T7801A", "A8032G", "A8402G"], "INT": ["K269R"], "gp120": ["L83I", "-114S", "S181T", "-371T"], "nef": ["I20M"], "p17": ["K15R", "E90K", "-124K"], "p24": ["L83V"], "p6": ["P30S"], "tat": ["H29K"]}, "labels": {"aa": "INT: K269R; gp120: L83I, -114S, S181T, -371T; nef: I20M; p17: K15R, E90K, -124K; p24: L83V; p6: P30S; tat: H29K"}}, "children": [{"name": "MN097584", "node_attrs": {"div": 0.14764999999999998, "accession": "MN097584", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2017.0}, "Strain_name": {"value": "CAP217_B_W1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C152A", "T201C", "G224A", "A278G", "-280G", "G518A", "A548G", "C572T", "C618A", "A645G", "A666T", "C679T", "A680G", "G686A", "-699A", "-700A", 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"C8328T", "T8332A", "T8337A", "A8364-", "G8365-", "C8366-", "A8367-", "G8368-", "T8371-", "G8373-", "T8374-", "T8375-", "G8376-", "G8377-", "A8378-", "A8405G", "C8406A", "A8441G", "T8451C", "A8465G", "T8471G", "G8479A", "G8487C", "C8489T", "C8490G", "A8491C", "A8494C", "G8499C", "C8500A", "T8501G", "A8503C", "T8504C", "C8517G", "G8520A", "C8543T", "G8561A", "G8588A", "C8590A", "C8597T", "T8651C", "A8652C", "C8666A", "G8678A", "C8684T", "C8688A", "G8729A", "T8747C", "G8780A", "T8786G", "C8789T", "C8809A", "A8837G", "G8852A", "G8864A", "A8869C", "A8873G", "A8936G", "A8947T", "A8954G", "G8955A"], "INT": ["K14R", "S17N", "A124N", "Q136H", "K188R", "I218T", "S255G", "A278D", "D286N"], "RT-p51": ["T35K", "A36E", "E39D", "A98G", "K174Q", "E207D", "K211R", "P243A", "E248D", "D291E", "M377Q", "T400M", "E432D", "A435T"], "RT-p66": ["T35K", "A36E", "E39D", "A98G", "K174Q", "E207D", "K211R", "P243A", "E248D", "D291E", "L377Q", "T400M", "E432D", "A435T", "R461K", "S468T", "T470N", "T477A", "S491L", "K527G"], "gp120": ["K18T", "V37I", "M56L", "N64S", "L97V", "V106N", "-107K", "N108T", "-109A", "-111C", "-112N", "-115M", "-116G", "-117E", "K141I", "I153L", "N159D", "I243V", "T255I", "E265N", "T288A", "I294E", "K307T", "K316M", "E322G", "P335Q", "I343V", "-367N", "-368D", "-370H", "-372I", "-373I", "I386-", "T387-", "L388-", "K418N", "N420S", "N432K", "N435D", "N436E", "T437E", "I439V"], "gp41": ["V2L", "S42N", "K77Q", "L84I", "Q108Y", "T109E", "D110S", "D129N", "R133M", "D137E", "N140I", "D163G", "N166K", "E215G", "K231R", "N239S", "L244I", "I266V", "A267I", "A270S", "A281V", "A310T", "I322L", "F340I", "A342I", "L345Q"], "nef": ["S8-", "S9-", "I10-", "V11-", "G12-", "S46N", "A49P", "H50A", "N51T", "A53Q", "D54A", "Q59E", "A60T", "A83E", "K104Q", "H116N", "A156D", "E176A", "Y202F", "D205N"], "p1": ["K4R"], "p17": ["I104V", "S111C", "T115M", "D122K", "G123E"], "p2": ["-10I", "-11N"], "p24": ["I15L", "T110N", "D180E", "S225G"], "p6": ["T8S", "A25D", "P26L"], "p7": ["R3K"], "pro": ["P39S", "Q61N", "I62V", "L93I"], "rev": ["T62D", "A68T", "D84G", "C85D", "S88I", "V102I", "S103P", "K116E"], "tat": ["V4I", "N7K", "K19E", "N80D"], "vif": ["L8M", "K33R", "S36N", "F39L", "G60R", "R93E", "A116T", "K122Q", "P131S", "N176K", "G182D"], "vpr": ["P4A", "T19A", "L60I", "I63M", "Q66R", "S94N", "S96P"], "vpu": ["I25L", "L34V", "R35K", "W41R", "V79D", "D81G", "L82R"]}, "labels": {"aa": "INT: K14R, S17N, A124N, Q136H, K188R, I218T, S255G, A278D, D286N; RT-p51: T35K, A36E, E39D, A98G, K174Q, E207D, K211R, P243A, E248D, D291E, M377Q, T400M, E432D, A435T; RT-p66: T35K, A36E, E39D, A98G, K174Q, E207D, K211R, P243A, E248D, D291E, L377Q, T400M, E432D, A435T, R461K, S468T, T470N, T477A, S491L, K527G; gp120: K18T, V37I, M56L, N64S, L97V, V106N, -107K, N108T, -109A, -111C, -112N, -115M, -116G, -117E, K141I, I153L, N159D, I243V, T255I, E265N, T288A, I294E, K307T, K316M, E322G, P335Q, I343V, -367N, -368D, -370H, -372I, -373I, I386-, T387-, L388-, K418N, N420S, N432K, N435D, N436E, T437E, I439V; gp41: V2L, S42N, K77Q, L84I, Q108Y, T109E, D110S, D129N, R133M, D137E, N140I, D163G, N166K, E215G, K231R, N239S, L244I, I266V, A267I, A270S, A281V, A310T, I322L, F340I, A342I, L345Q; nef: S8-, S9-, I10-, V11-, G12-, S46N, A49P, H50A, N51T, A53Q, D54A, Q59E, A60T, A83E, K104Q, H116N, A156D, E176A, Y202F, D205N; p1: K4R; p17: I104V, S111C, T115M, D122K, G123E; p2: -10I, -11N; p24: I15L, T110N, D180E, S225G; p6: T8S, A25D, P26L; p7: R3K; pro: P39S, Q61N, I62V, L93I; rev: T62D, A68T, D84G, C85D, S88I, V102I, S103P, K116E; tat: V4I, N7K, K19E, N80D; vif: L8M, K33R, S36N, F39L, G60R, R93E, A116T, K122Q, P131S, N176K, G182D; vpr: P4A, T19A, L60I, I63M, Q66R, S94N, S96P; vpu: I25L, L34V, R35K, W41R, V79D, D81G, L82R"}}}, {"name": "C_NODE_0000041", "node_attrs": {"div": 0.10470999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G157T", "T159G", "-160T", "-701C", "-707A", "A1101G", "C1115A", "T1358C", "-1453C", "C1679T", "G2182A", "T2425C", "T2735C", "A3043G", "G3142A", "G3756A", "T3757G", "C3865T", "C3991T", "G4677A", "G4861A", "A5567G", "T5621C", "A5866G", "A6030G", "G6088A", "G6121A", "A6195G", "-6203G", "-6207C", "-6223T", "C6305T", "T6337C", "C6631T", "A6733T", "A6811G", "A6854G", "T6901C", "-6951C", "-6994T", "C7009T", "T7267A", "C7511T", "C7625G", "A7677G", "T7774C", "C7775T", "G7885A", "G7947A", "C7950T", "G8019A", "-8369C", "-8370A", "-8372A", "A8409G", "T8460C", "A8604G", "A8823G", "A8874G", "T8883C", "A8967G", "-8979A"], "RT-p51": ["D123G", "F214L", "M377L"], "RT-p66": ["D123G", "F214L", "T400I", "S554K"], "gp120": ["E59G", "-112T", "P151S", "S161N", "A291T", "K329-"], "gp41": ["Q108E", "N125S", "N156K"], "nef": ["T23A", "Y40H", "S88G", "E108D", "N161D", "R178G"], "rev": ["T18A", "T114A"], "tat": ["D64G", "P81S"], "vif": ["V31I"]}, "labels": {"aa": "RT-p51: D123G, F214L, M377L; RT-p66: D123G, F214L, T400I, S554K; gp120: E59G, -112T, P151S, S161N, A291T, K329-; gp41: Q108E, N125S, N156K; nef: T23A, Y40H, S88G, E108D, N161D, R178G; rev: T18A, T114A; tat: D64G, P81S; vif: V31I"}}, "children": [{"name": "DQ396399", "node_attrs": {"div": 0.14839999999999998, "accession": "DQ396399", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03ZAPS152MB1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A133G", "C150T", "C189T", "T201C", "A286G", "A360C", "A388G", "A398G", "A412G", "G413C", "A418G", "T467C", "T485C", "A500T", "G518A", "A520G", "A521C", "C525T", "C540A", "A548G", "G562A", "G608C", "G690A", "C694A", "T695G", "A697C", "C698T", "-699G", "-700A", "-705A", "-706A", "A715-", "G716-", "G740T", "T767C", "G771T", "C773T", "A774C", "C788T", "A809G", "G821A", "T824C", "T827C", "T885C", "A920G", "T944C", "A977G", "G978A", "T979C", "A1070G", "A1089G", "T1100C", "G1109A", "T1172A", "A1217G", "C1229T", "C1292A", "A1379G", "G1404A", "G1421A", "C1439T", "A1450G", "C1460A", "G1469A", "G1474A", "A1475T", "T1491C", "A1495G", "G1503A", "A1536C", "G1553A", "G1554A", "G1568A", "A1588G", "G1619A", "G1687A", "A1691G", "C1751A", "T1767A", "C1768T", "C1790T", "G1819A", "T1828G", "G1841A", "G1845C", "A1879G", "A1894G", "A1942G", "T1956A", "G2042A", "C2047T", "T2101A", "C2107T", "A2113G", "A2152G", "G2156A", "A2212G", "A2215C", "G2221A", "A2237T", "T2257C", "G2293A", "G2359T", "A2371G", "A2400G", "A2404G", "G2447A", "C2503T", "T2520C", "T2527C", "A2592G", "G2602A", "C2740T", "A2839G", "C2909T", "G3091A", "A3099G", "A3136G", "T3139C", "G3173A", "A3200G", "G3292A", "C3307T", "A3316G", "A3348G", "G3440A", "A3488G", "T3497C", "G3523A", "G3544T", "A3611C", "G3643A", "G3766A", "G3772A", "A3787G", "A3816G", "A3822G", "A3835G", "A3876G", "C3922T", "T3962C", "A3989G", "C4021A", "A4063G", "C4079T", "A4093G", "C4141T", "G4252A", "A4255G", "A4275G", "A4407G", "A4459G", "C4471T", "C4492T", "A4581G", "T4606G", "G4695A", "G4696A", "T4761G", "G4769A", "A4786T", "A4805G", "A4817G", "T4820A", "C4937A", "A4949G", "A4952G", "T4975C", "A4993C", "A5037G", "C5041T", "A5058C", "T5084C", "A5090G", "G5140A", "C5197T", "A5200G", "T5206C", "C5221T", "G5236A", "T5275C", "A5285C", "T5292C", "A5299G", "G5308A", "A5345G", "A5432C", "T5442C", "A5444C", "C5461A", "C5463A", "T5490C", "C5508A", "T5511C", "C5542A", "T5562C", "A5575G", "A5615C", "T5617A", "C5620G", "A5622T", "A5623-", "G5624-", "A5625-", "A5647G", "T5678C", "C5684T", "G5717A", "A5718G", "T5728C", "G5729A", "G5775A", "G5781T", "T5787C", "A5790C", "C5802A", "A5818G", "A5830G", "A5845G", "A5846C", "G5856A", "G5857T", "G5860A", "G5861A", "A5867C", "C5884T", "T5899G", "A5911G", "G5956T", "G5972A", "T6026A", "T6076G", "A6092G", "A6167-", "A6168-", "T6169-", "G6170-", "T6171-", "A6173-", "A6179G", "A6180C", "T6181A", "A6185G", "A6186T", "-6198C", "T6199A", "-6201A", "-6202A", "-6204C", "-6205A", "-6208A", "-6210T", "-6211G", "-6213C", "-6214A", "-6215G", "-6216C", "-6217A", "-6218T", "-6219A", "-6220T", "-6222A", "-6225T", "T6238C", "A6273G", "A6275C", "T6295C", "C6318A", "G6323A", "T6325G", "A6326G", "A6327G", "A6332T", "T6383C", "C6403T", "A6413G", "A6415G", "A6450G", "G6463T", "C6488A", "A6489C", "G6532A", "G6569A", "G6577C", "A6589T", "A6605G", "A6668G", "A6669G", "A6706G", "C6752A", "A6770T", "G6771C", "A6774G", "C6777G", "-6778C", "A6781T", "A6789C", "G6802A", "A6807G", "C6824T", "A6840G", "A6844T", "A6848G", "A6849G", "A6850C", "A6855C", "T6876C", "G6881A", "T6895C", "C6919T", "A6935G", "A6936G", "G6937C", "-6948G", "-6949T", "-6952A", "-6953C", "-6954T", "-6955G", "-6956T", "-6957T", "-6958T", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964T", "-6965A", "-6966C", "-6967T", "-6983T", "-6984C", "-6985A", "T6988C", "G6989A", "-6990G", "-6991T", "-6995T", "-6996C", "-6997A", "-6998A", "-7000C", "A7002G", "-7004A", "-7005C", "-7006T", "A7007G", "C7008A", "C7014T", "C7127T", "T7138A", "-7150A", "C7155T", "A7158G", "T7159C", "G7160A", "-7162A", "A7165C", "T7170C", "G7234A", "G7252A", "A7268T", "A7269C", "A7297G", "G7307-", "T7308-", "G7309-", "G7311C", "G7322A", "A7348C", "G7366A", "A7376G", "T7403C", "A7504G", "T7537C", "G7552A", "C7590A", "C7629T", "C7651T", "T7678C", "G7688A", "A7700C", "G7701A", "A7734G", "G7835A", "G7868A", "T7876C", "A7938T", "C7940T", "A8006G", "T8008G", "C8009A", "G8032T", "G8111A", "A8118G", "G8134A", "C8146T", "T8205C", "T8209C", "T8239C", "A8242G", "G8254A", "T8264G", "A8267G", "A8273G", "A8276-", "T8277-", "T8278-", "T8279-", "G8280-", "T8281-", "A8282-", "G8283-", "A8284-", "G8285-", "C8286-", "T8287-", "A8288-", "T8289-", "C8290-", "C8291-", "G8292-", "C8293-", "A8294-", "A8295-", "C8296-", "C8301T", "A8305G", "G8349A", "G8407A", "A8425C", "A8446G", "T8451C", "A8465T", "C8483T", "A8486C", "G8487C", "C8489T", "C8543T", "A8636T", "T8770A", "A8816G", "T8831C", "A8837G", "G8846A", "G8864T", "C8892G", "A8893T", "C8921T", "A8922G", "C8934A", "A8936G", "A8947T", "G8968A", "-8970G", "-8971C", "-8972T", "-8973T", "-8974T", "-8975C", "-8976T", "-8977G", "-8978C", "A8980G", "T9029-", "A9030G", "T9068C", "C9078T", "C9132A"], "INT": ["K14R", "H16R", "K34R", "I72V", "D167G", "K211R"], "RT-p51": ["V21I", "E40D", "T48S", "W88C", "K102R", "V118I", "I142T", "K166R", "P272S", "D335G", "A360T", "T369A", "T400I", "N418S"], "RT-p66": ["V21I", "E40D", "T48S", "W88C", "K102R", "V118I", "I142T", "K166R", "P272S", "D335G", "A360T", "T369A", "N418S", "E449K", "K465E", "S468P", "Q483H", "I506L"], "gp120": ["R1N", "V3M", "N5H", "E34D", "V40I", "M56I", "L58M", "D74E", "I80V", "D105-", "V106-", "-109A", "-111V", "-115T", "-116K", "-117A", "-124V", "K140R", "K141Q", "P155Q", "D157K", "N158G", "N160S", "C177R", "I187V", "K199R", "K203N", "H212T", "E239K", "E241D", "R245S", "N251D", "N272G", "T292G", "Q300K", "K307R", "-308S", "K309N", "K312T", "K318R", "H324Y", "-328R", "K332G", "N334A", "L341P", "K361G", "-367L", "-368F", "-370S", "-377S", "-378N", "-379S", "-380T", "-381S", "-382N", "-383S", "-384T", "-385D", "T387I", "N432K", "N434I", "N435S", "N436K", "I439T", "K472S"], "gp41": ["V2A", "G3-", "V7M", "T25A", "T109I", "D129N", "R133Q", "D137E", "K144R", "N166K", "V178I", "A189T", "N212I", "P213S", "P216Q", "I235V", "A270T", "E272G", "I301T", "I322V", "R324G", "I325-", "C326-", "R327-", "A328-", "I329-", "R330-", "N331-", "P333L"], "nef": ["G3S", "R22Q", "E28A", "Q35R", "A49P", "E98D", "F143Y", "M168I", "E174D", "Q184V", "M194V", "L198M", "Y202F"], "p17": ["K18R", "K26S", "H28R", "E55D", "K62S", "Q69K", "R76K", "K91N", "A119K", "A120E", "D121A"], "p2": ["N8-", "-10S", "-11T", "-12K"], "p24": ["A14S", "I15L", "V83T", "S120G", "I124V", "D128E", "D187E"], "p6": ["S3N", "S30M", "S47N", "L50W"], "p7": ["M1I", "R3N", "S9P", "K10R", "V13I", "I24L", "A30T", "K41R"], "pro": ["V15I", "G16A", "V19I", "F53Y", "V82I"], "rev": ["D9E", "V16A", "K30N", "P31L", "H53R", "S54E", "T62S", "S88N", "G96R", "P100S"], "tat": ["K19T", "N23T", "N67D", "T77S", "N80S", "S81N"], "vif": ["V7G", "S36N", "G37K", "L59V", "K67I", "D78E", "R92K", "D117E", "I130T", "Q136P", "T151A", "A152V", "K158Q", "G185E"], "vpr": ["I61L", "I63T"], "vpu": ["-2L", "-10G", "I14V", "I24T", "A26V", "R37K", "W41Q", "E58D", "M71V", "R75G", "N80A"]}, "labels": {"aa": "INT: K14R, H16R, K34R, I72V, D167G, K211R; RT-p51: V21I, E40D, T48S, W88C, K102R, V118I, I142T, K166R, P272S, D335G, A360T, T369A, T400I, N418S; RT-p66: V21I, E40D, T48S, W88C, K102R, V118I, I142T, K166R, P272S, D335G, A360T, T369A, N418S, E449K, K465E, S468P, Q483H, I506L; gp120: R1N, V3M, N5H, E34D, V40I, M56I, L58M, D74E, I80V, D105-, V106-, -109A, -111V, -115T, -116K, -117A, -124V, K140R, K141Q, P155Q, D157K, N158G, N160S, C177R, I187V, K199R, K203N, H212T, E239K, E241D, R245S, N251D, N272G, T292G, Q300K, K307R, -308S, K309N, K312T, K318R, H324Y, -328R, K332G, N334A, L341P, K361G, -367L, -368F, -370S, -377S, -378N, -379S, -380T, -381S, -382N, -383S, -384T, -385D, T387I, N432K, N434I, N435S, N436K, I439T, K472S; gp41: V2A, G3-, V7M, T25A, T109I, D129N, R133Q, D137E, K144R, N166K, V178I, A189T, N212I, P213S, P216Q, I235V, A270T, E272G, I301T, I322V, R324G, I325-, C326-, R327-, A328-, I329-, R330-, N331-, P333L; nef: G3S, R22Q, E28A, Q35R, A49P, E98D, F143Y, M168I, E174D, Q184V, M194V, L198M, Y202F; p17: K18R, K26S, H28R, E55D, K62S, Q69K, R76K, K91N, A119K, A120E, D121A; p2: N8-, -10S, -11T, -12K; p24: A14S, I15L, V83T, S120G, I124V, D128E, D187E; p6: S3N, S30M, S47N, L50W; p7: M1I, R3N, S9P, K10R, V13I, I24L, A30T, K41R; pro: V15I, G16A, V19I, F53Y, V82I; rev: D9E, V16A, K30N, P31L, H53R, S54E, T62S, S88N, G96R, P100S; tat: K19T, N23T, N67D, T77S, N80S, S81N; vif: V7G, S36N, G37K, L59V, K67I, D78E, R92K, D117E, I130T, Q136P, T151A, A152V, K158Q, G185E; vpr: I61L, I63T; vpu: -2L, -10G, I14V, I24T, A26V, R37K, W41Q, E58D, M71V, R75G, N80A"}}}, {"name": "AY463220", "node_attrs": {"div": 0.14267, "accession": "AY463220", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2000.0}, "Strain_name": {"value": "1195MB"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A124G", "T155G", "T165C", "A242G", "G361A", "A369-", "A435T", "G438A", "T473C", "T495G", "A520C", "A571T", "G579A", "C618A", "A638G", "C684A", "A685C", "G686A", "G687-", "A691C", "C694G", "T695C", "G696A", "C698A", "-699A", "-700G", "A704C", "-705T", "-706G", "-708T", "-709G", "-710G", "-711A", "-712A", "T722C", "T749A", "C796T", "G818A", "G956A", "T974C", "G1002A", "A1016G", "G1047-", "A1133C", "A1157G", "T1253C", "T1271G", "G1394A", "C1406T", "G1443A", "C1444T", "A1452G", "A1461G", "T1511C", "G1532A", "T1547C", "A1586G", "A1587C", "T1616A", "G1622A", "C1680G", "A1701T", "C1750A", "G1752A", "T1754G", "C1756A", "C1849T", "A1853G", "C1867T", "A1872G", "A1904C", "A1908G", "G1972A", "T1986C", "A2038G", "A2113C", "C2129T", "G2131A", "C2202A", "T2269C", "T2302C", "C2326T", "T2393C", "A2398G", "C2511G", "T2520A", "T2521A", "G2539A", "G2548A", "C2575T", "C2589T", "A2662G", "G2714C", "A2743T", "C2749T", "G2752A", "A2887G", "A2924G", "T2932G", "A3001G", "G3004A", "C3055T", "A3080C", "A3088G", "G3151A", "C3175A", "A3293G", "G3334A", "G3382A", "C3399T", "G3402A", "G3439A", "A3442C", "A3449T", "G3451A", "A3454G", "G3473A", "A3490G", "A3524G", "T3550C", "C3567T", "A3805C", "A3874T", "T3898C", "A3925G", "T3976C", "A3985G", "C3995T", "T4075C", "A4084G", "G4092C", "A4108G", "G4109-", "A4195G", "C4234T", "A4306G", "G4366A", "T4534C", "G4561A", "A4570G", "G4636A", "T4674C", "G4687A", "A4693G", "T4701G", "G4737A", "A4748G", "A4768G", "T4801C", "T4857C", "A4860C", "G4893A", "G4932A", "C4955T", "A4956G", "C4988A", "G5062T", "C5125T", "G5137A", "A5159G", "G5185A", "C5213A", "A5215G", "C5227A", "T5228C", "T5239C", "G5279A", "C5306T", "T5354C", "A5421G", "C5461T", "C5472T", "T5475C", "C5479T", "A5544C", "G5546A", "G5563A", "G5565A", "C5579T", "A5581G", "T5616C", "C5620A", "-5626T", "G5643A", "A5659C", "T5707A", "T5708G", "T5745C", "T5843G", "A5907C", "A5911T", "G5954A", "A5958C", "A6022G", "A6059G", "T6100C", "A6113G", "C6115T", "C6116T", "A6130G", "T6134C", "C6160T", "A6167G", "-6172A", "-6174A", "-6175A", "A6176G", "A6177G", "A6186C", "A6192G", "A6197G", "-6198G", "-6201G", "-6202T", "-6204G", "-6205T", "-6208C", "A6209T", "-6210A", "-6211C", "-6213A", "-6214T", "-6215A", "-6216G", "-6217C", "-6218A", "-6219T", "-6220G", "-6221G", "-6222C", "-6225G", "A6268G", "A6283T", "C6285T", "A6311G", "A6319G", "C6331T", "C6333A", "G6338T", "A6339C", "C6340T", "C6363G", "C6583G", "C6607A", "C6612A", "C6613A", "G6638A", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "A6692G", "G6694T", "-6697A", "-6698G", "-6699G", "-6700G", "-6701A", "-6702T", "A6723T", "G6732C", "T6758C", "A6774C", "-6778A", "A6781G", "C6787T", "A6788G", "T6793A", "T6804C", "G6808A", "A6840C", "C6857T", "T6860C", "C6862T", "A6905G", "-6948T", "-6949A", "A6950T", "-6952T", "-6971A", "-6972C", "-6973T", "-6974A", "-6975G", "-6976T", "-6977G", "-6978A", "-6979A", "-6990T", "-6991A", "-6995A", "-6996G", "-6997T", "-6998G", "-7000A", "-7004G", "-7005T", "-7006A", "A7010-", "T7011-", "C7012-", "A7044G", "C7045G", "A7056G", "G7057A", "G7065A", "C7089A", "A7108C", "A7113G", "T7130C", "T7138G", "-7150C", "A7156G", "A7161G", "-7162C", "A7165G", "G7198A", "A7256G", "G7293A", "C7325T", "T7330C", "C7407T", "G7477A", "G7492A", "A7589G", "A7689G", "C7692T", "A7714C", "A7731G", "A7732G", "A7801C", "A7818G", "A7828C", "G7846A", "A7862G", "C7869G", "T7888A", "T7921C", "A7989G", "C8044G", "T8047C", "G8050C", "A8079G", "A8099G", "T8101G", "G8102A", "T8115C", "A8118C", "T8122G", "T8164C", "T8176C", "A8198G", "T8200A", "T8218C", "A8266T", "A8276G", "G8280T", "G8304C", "G8335A", "T8371G", "C8382T", "G8385A", "A8396G", "C8406A", "G8436A", "C8437A", "A8441G", "T8498C", "A8534C", "G8564A", "C8603T", "A8621T", "A8643G", "A8647G", "C8648G", "A8655C", "A8657G", "A8851T", "T8867C", "A8870C", "G8871A", "A8882G", "A8886G", "A8887T", "C8966T", "G8968-", "A8969-", "C8992A", "T9029A", "A9030T", "T9115C", "C9129T", "T9130C", "C9132T", "A9135G"], "INT": ["E10D", "I50M", "G106A", "V112-"], "RT-p51": ["E6D", "A36E", "T139R", "I142K", "T165I", "E207Q", "R277G", "I329L", "T400V", "A435V", "G436E"], "RT-p66": ["E6D", "A36E", "T139R", "I142K", "T165I", "E207Q", "R277G", "I329L", "I400V", "A435V", "G436E", "E449D", "M452L", "D460N", "T477A", "S491L"], "gp120": ["K18T", "E19D", "E34K", "K35T", "K69E", "S87G", "-107K", "N108G", "-109N", "-111N", "N113T", "-115S", "-116S", "-117G", "-118T", "-119Y", "-120N", "-121S", "-122M", "-123A", "-124G", "K143N", "A144V", "I153V", "N158K", "T170S", "I243M", "N251K", "A253E", "E262K", "S278G", "R280G", "Y290F", "T292N", "G293A", "Y302H", "K307T", "-308T", "K312E", "V317A", "-328T", "N334E", "P335S", "S336P", "I343V", "R351G", "S365I", "-367S", "-368E", "-370V", "I386-", "N397R", "E401G", "R404Q", "A412E", "K418N", "N420S", "N434T", "N436G", "I468V", "R480K"], "gp41": ["L8F", "S35F", "N96A", "D129G", "T130I", "E143G", "K172R", "I187V", "A189G", "N195K", "P216L", "Q229R", "D247E", "Q259R", "I266V", "A267T", "V271A", "E272A", "S299G", "V321F", "I325V", "C326F", "R334T"], "nef": ["I10R", "P14S", "A15T", "A32K", "E93D", "I101V", "Y102W", "K105Q", "Q170L", "E176D", "E177K", "K182V"], "p17": ["R9K", "K12-"], "p2": ["A7I", "-11A", "-12N", "I13V"], "p24": ["A22V", "V91I", "G106-"], "p6": ["L1V", "T8S", "P24H", "A25T", "P26Q"], "p7": ["K41Q"], "pro": ["D25G", "I36L", "N37S", "L63P"], "rev": ["E10A", "A11T", "R17K", "T62A", "R66G", "S67P", "A68P", "D84G", "C85D", "S92A", "S106P", "E117G"], "tat": ["K29Y", "S57N", "E63K", "P68L", "I69V"], "vif": ["R17K", "Y30H", "R34K", "F39V", "V51I", "E61G", "L72S", "R92Q", "A103T", "A116T", "I124V", "D134E", "R159I", "T180I", "R184K"], "vpr": ["T19A", "P37T", "A59T"], "vpu": ["I18L", "L34R", "V79G"]}, "labels": {"aa": "INT: E10D, I50M, G106A, V112-; RT-p51: E6D, A36E, T139R, I142K, T165I, E207Q, R277G, I329L, T400V, A435V, G436E; RT-p66: E6D, A36E, T139R, I142K, T165I, E207Q, R277G, I329L, I400V, A435V, G436E, E449D, M452L, D460N, T477A, S491L; gp120: K18T, E19D, E34K, K35T, K69E, S87G, -107K, N108G, -109N, -111N, N113T, -115S, -116S, -117G, -118T, -119Y, -120N, -121S, -122M, -123A, -124G, K143N, A144V, I153V, N158K, T170S, I243M, N251K, A253E, E262K, S278G, R280G, Y290F, T292N, G293A, Y302H, K307T, -308T, K312E, V317A, -328T, N334E, P335S, S336P, I343V, R351G, S365I, -367S, -368E, -370V, I386-, N397R, E401G, R404Q, A412E, K418N, N420S, N434T, N436G, I468V, R480K; gp41: L8F, S35F, N96A, D129G, T130I, E143G, K172R, I187V, A189G, N195K, P216L, Q229R, D247E, Q259R, I266V, A267T, V271A, E272A, S299G, V321F, I325V, C326F, R334T; nef: I10R, P14S, A15T, A32K, E93D, I101V, Y102W, K105Q, Q170L, E176D, E177K, K182V; p17: R9K, K12-; p2: A7I, -11A, -12N, I13V; p24: A22V, V91I, G106-; p6: L1V, T8S, P24H, A25T, P26Q; p7: K41Q; pro: D25G, I36L, N37S, L63P; rev: E10A, A11T, R17K, T62A, R66G, S67P, A68P, D84G, C85D, S92A, S106P, E117G; tat: K29Y, S57N, E63K, P68L, I69V; vif: R17K, Y30H, R34K, F39V, V51I, E61G, L72S, R92Q, A103T, A116T, I124V, D134E, R159I, T180I, R184K; vpr: T19A, P37T, A59T; vpu: I18L, L34R, V79G"}}}]}]}, {"name": "C_NODE_0000042", "node_attrs": {"div": 0.10008999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T749C", "A905G", "G956A", "A1157G", "A4195G", "G5082A", "C5579T", "C6160T", "-6172T", "-6174C", "-6175T", "A6206-", "C6340G", "A6730T", "G6732A", "A6801G", "C6833-", "C6834-", "C6874T", "-7162C", "A7268G", "A7828C", "C7869G", "T7888A", "C8892G", "A8922T", "C8934A", "T8935A"], "gp120": ["D157N", "N158-", "N160S", "S162E", "G293E", "T366-"], "gp41": ["A189G", "N195K", "S287N"], "nef": ["Q184E", "L198K"], "p17": ["I61M", "Y79F"], "tat": ["P68L"], "vif": ["V166I"]}, "labels": {"aa": "gp120: D157N, N158-, N160S, S162E, G293E, T366-; gp41: A189G, N195K, S287N; nef: Q184E, L198K; p17: I61M, Y79F; tat: P68L; vif: V166I"}}, "children": [{"name": "C_NODE_0000043", "node_attrs": {"div": 0.10341999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G157T", "T159G", "-160T", "T419C", "A571T", "G690A", "T695G", "A697C", "C698T", "-699G", "-700A", "C879G", "A880G", "A1101G", "C3376T", "G4636A", "G5225A", "C5495G", "-5626C", "-6202T", "-6210T", "-6211G", "-6225G", "A7152G", "A7628G", "C7629A", "A7855G", "G8163A", "G8188A", "G8349A", "G8350A", "C8590G", "A8887G"], "RT-p51": ["F214L"], "RT-p66": ["F214L"], "gp120": ["N113-", "-158G", "N334K"], "gp41": ["T109E"], "nef": ["G3N", "A83G", "K182R"], "p2": ["-11A"], "p24": ["Q50G", "I124V"], "vif": ["R17K"], "vpr": ["G41N"]}, "labels": {"aa": "RT-p51: F214L; RT-p66: F214L; gp120: N113-, -158G, N334K; gp41: T109E; nef: G3N, A83G, K182R; p2: -11A; p24: Q50G, I124V; vif: R17K; vpr: G41N"}}, "children": [{"name": "DQ396376", "node_attrs": {"div": 0.14123999999999998, "accession": "DQ396376", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03ZAPS071MB1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A124G", "T156G", "G164A", "C200T", "A286G", "G354A", "C365G", "A379C", "A520G", "A530T", "G554A", "G562A", "A581G", "A584G", "A645G", "C684A", "-701T", "G703A", "-714A", "A764G", "G771C", "C823G", "G836A", "T897C", "A914G", "T992C", "A995G", "G1002A", "T1063C", "G1090A", "G1109A", "A1134G", "G1192A", "A1352C", "A1400G", "G1404A", "T1422C", "A1452G", "-1453C", "-1455A", "-1456A", "-1457T", "A1458-", "A1459-", "C1460-", "A1461G", "G1477A", "C1523T", "A1529G", "G1553A", "A1643G", "T1676C", "A1703G", "C1744T", "G1752A", "C1825A", "T1832A", "T1854C", "A1857G", "G1861A", "C1867A", "A1903C", "A1945T", "A1981G", "A2002G", "A2007G", "T2062C", "A2080G", "C2083T", "C2087T", "T2104C", "G2111A", "C2129T", "A2161G", "G2221A", "C2326T", "A2419C", "A2446G", "G2447A", "G2470A", "G2548A", "A2560G", "A2578G", "A2665G", "G2705A", "A2715C", "A2727G", "T2737A", "G2761A", "A2764G", "A2809G", "G2842A", "T2885C", "A2920G", "G2950A", "C3095A", "C3100T", "C3175A", "G3250A", "A3280G", "G3292A", "T3445G", "A3449C", "T3497A", "T3499C", "C3504G", "A3508C", "A3522G", "C3545A", "T3566C", "C3589T", "T3628C", "A3642G", "C3691T", "A3706G", "A3805C", "G3850T", "C3865T", "A3989G", "C4021T", "C4072T", "A4081G", "A4231G", "T4276C", "T4540C", "G4623A", "T4694A", "A4697C", "A4717T", "C4724T", "A4786C", "A4790G", "T4799G", "A4949G", "G5045A", "A5063G", "A5103C", "C5125T", "G5167A", "A5200G", "G5226A", "C5237T", "A5247C", "T5263C", "A5267G", "T5275C", "G5296A", "T5355A", "G5357A", "C5398T", "C5412T", "G5448T", "C5479T", "G5495A", "G5538A", "A5544C", "-5600C", "A5603-", "A5614G", "C5620A", "T5621C", "A5655G", "G5676A", "C5684T", "A5701G", "T5707G", "G5711A", "A5790T", "C5827G", "T5843G", "A5881C", "A5907C", "G6073A", "T6076C", "A6158C", "C6165G", "A6166C", "A6168C", "C6174A", "A6176G", "A6177C", "A6180C", "T6181C", "A6182G", "C6189G", "A6194G", "A6195C", "-6198C", "T6199C", "-6201T", "-6208A", "-6212G", "-6213T", "-6214A", "-6215C", "-6216T", "-6217G", "-6218A", "-6219A", "-6220G", "-6221A", "-6222A", "-6223A", "G6224T", "G6227-", "A6228-", "A6229-", "A6230-", "T6231-", "A6232-", "A6233-", "T6238C", "C6247T", "A6251G", "C6285T", "G6286T", "A6288C", "G6303A", "C6305T", "A6311G", "C6318A", "A6319G", "G6323A", "A6326G", "A6327G", "C6331T", "A6332G", "C6333G", "T6334G", "A6430G", "C6446T", "C6488A", "G6532A", "G6577T", "G6611A", "C6612T", "C6613A", "G6653A", "G6655A", "A6682G", "T6688C", "A6734G", "A6765G", "A6773G", "A6774G", "A6776-", "A6777-", "G6779-", "A6780-", "A6781-", "A6800C", "G6802A", "A6805C", "A6809G", "A6810G", "G6821A", "C6829T", "T6835-", "A6848C", "T6860G", "G6881A", "T6932A", "G6940A", "A6947-", "A6950-", "A6986-", "T6988-", "-6990A", "-6991C", "C6993A", "-6994T", "-6995G", "-6996A", "-6997G", "-6998A", "-6999C", "-7000A", "-7003C", "-7004G", "-7005A", "-7006A", "A7007T", "C7008A", "C7014T", "A7056G", "A7069C", "C7089A", "C7127T", "A7148-", "A7149-", "A7151G", "A7154G", "C7162A", "A7165C", "A7241C", "A7255C", "A7315G", "A7348G", "A7441G", "G7459A", "T7588C", "A7589G", "A7602G", "C7605G", "C7625A", "C7651A", "A7689G", "C7692T", "G7702A", "A7711G", "A7732G", "A7753G", "A7770C", "A7771G", "A7773G", "T7801G", "T7852C", "T7867G", "T7876C", "G7890A", "G7918A", "G7947A", "G7962A", "G7973A", "A7974G", "A8006G", "T8008G", "T8047C", "C8048T", "C8051A", "T8101A", "C8103T", "A8104G", "G8134C", "C8145T", "G8158A", "A8172T", "T8177G", "A8196G", "A8198G", "T8200G", "G8208A", "A8236G", "A8260T", "T8264G", "A8267C", "A8269G", "A8276C", "A8294C", "G8304C", "A8305T", "-8369C", "-8370A", "-8372A", "A8408G", "G8418C", "A8435G", "C8450T", "A8455G", "A8459C", "T8460C", "A8465G", "C8485T", "A8486C", "C8490T", "A8494C", "A8503C", "C8510A", "A8537G", "T8585C", "A8636T", "T8651C", "C8688A", "A8689G", "T8708C", "T8711C", "C8809A", "C8810G", "A8812C", "A8827G", "C8840T", "A8851T", "G8861A", "A8870C", "C8906T", "C8921T", "T8922C", "T8923G", "C8927T", "-8970G", "A8980-", "G9007T", "T9012C", "A9030G", "T9039C", "T9109C", "A9131G"], "INT": ["E10D", "E25D", "I72V", "G283D"], "RT-p51": ["E6K", "V118I", "D123G", "E204K", "E207A", "K211R", "Q334N", "M377L"], "RT-p66": ["E6K", "V118I", "D123G", "E204K", "E207A", "K211R", "Q334N", "M452L", "S468T", "T470S", "E471D", "K476R", "L484I", "S491P", "E516G"], "gp120": ["K18T", "M56I", "N102H", "D105A", "V106N", "-107S", "-109A", "E125-", "I126-", "K127-", "T133A", "A144V", "Y145S", "R150K", "P151S", "I153V", "P155Q", "S160G", "H212N", "E241D", "A253I", "V267I", "I294V", "N304S", "K307G", "K309-", "K316R", "K319G", "E323K", "P326-", "N327-", "-328N", "K332Q", "S336A", "S360T", "S365D", "-366N", "-367E", "-368T", "-370E", "-371Y", "T387I", "E401G", "A412E", "N432G", "N433E", "N435E", "N436T", "T437K", "I463L", "K472E"], "gp41": ["I4M", "N96A", "N100S", "S101C", "Q108K", "D129G", "T130I", "D137E", "N156T", "N157S", "N166K", "F188L", "R196K", "G220E", "E224R", "I235V", "N239S", "A267V", "A281V", "Q290L", "W292G", "K298R", "S299G", "S302N", "I322L", "I325L", "N331H", "R334T"], "nef": ["A26P", "D38G", "K39N", "Y40H", "T48I", "H50Y", "N51T", "D54A", "E98D", "E108D", "H116S", "A156E", "N157T", "N162S", "Q170L", "M173I", "E176D", "M194R"], "p17": ["V7I", "K15T", "K62R", "Q65H", "R76K", "I104V", "Q117K", "D122E", "G123K"], "p2": ["-12N", "I13V"], "p24": ["A14P", "A31G", "V91I", "L111P", "S120N", "I135V", "R154K"], "p6": ["-18E", "-19E", "E20I", "E21T", "T22P", "A25-", "P26-", "P49H"], "p7": ["S4N"], "pro": ["S12T", "V19T", "K20R", "E35D", "K70R"], "rev": ["S8N", "E10A", "R42K", "H53R", "S54A", "S67L", "A68E", "C85S", "S86G", "G96Q", "G104R", "L110W", "E117G"], "tat": ["K24N", "T40K", "E85K"], "vif": ["V13I", "S36K", "Y44F", "K67T", "T180I"], "vpr": ["H45Y", "E48A", "T55A", "L84I"], "vpu": ["-2L", "-3D", "-4L", "-5T", "-8A", "-9R", "-10V", "W23*", "A26V", "K32E", "L34V", "R35K", "L74V", "V79G"]}, "labels": {"aa": "INT: E10D, E25D, I72V, G283D; RT-p51: E6K, V118I, D123G, E204K, E207A, K211R, Q334N, M377L; RT-p66: E6K, V118I, D123G, E204K, E207A, K211R, Q334N, M452L, S468T, T470S, E471D, K476R, L484I, S491P, E516G; gp120: K18T, M56I, N102H, D105A, V106N, -107S, -109A, E125-, I126-, K127-, T133A, A144V, Y145S, R150K, P151S, I153V, P155Q, S160G, H212N, E241D, A253I, V267I, I294V, N304S, K307G, K309-, K316R, K319G, E323K, P326-, N327-, -328N, K332Q, S336A, S360T, S365D, -366N, -367E, -368T, -370E, -371Y, T387I, E401G, A412E, N432G, N433E, N435E, N436T, T437K, I463L, K472E; gp41: I4M, N96A, N100S, S101C, Q108K, D129G, T130I, D137E, N156T, N157S, N166K, F188L, R196K, G220E, E224R, I235V, N239S, A267V, A281V, Q290L, W292G, K298R, S299G, S302N, I322L, I325L, N331H, R334T; nef: A26P, D38G, K39N, Y40H, T48I, H50Y, N51T, D54A, E98D, E108D, H116S, A156E, N157T, N162S, Q170L, M173I, E176D, M194R; p17: V7I, K15T, K62R, Q65H, R76K, I104V, Q117K, D122E, G123K; p2: -12N, I13V; p24: A14P, A31G, V91I, L111P, S120N, I135V, R154K; p6: -18E, -19E, E20I, E21T, T22P, A25-, P26-, P49H; p7: S4N; pro: S12T, V19T, K20R, E35D, K70R; rev: S8N, E10A, R42K, H53R, S54A, S67L, A68E, C85S, S86G, G96Q, G104R, L110W, E117G; tat: K24N, T40K, E85K; vif: V13I, S36K, Y44F, K67T, T180I; vpr: H45Y, E48A, T55A, L84I; vpu: -2L, -3D, -4L, -5T, -8A, -9R, -10V, W23*, A26V, K32E, L34V, R35K, L74V, V79G"}}}, {"name": "C_NODE_0000044", "node_attrs": {"div": 0.10975999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A607G", "-701C", "G818A", "T944C", "G1142A", "C1220T", "T1547C", "G1568A", "G1687A", "C1751A", "C1849T", "A1853G", "G2182A", "G2463A", "T2735C", "G2951A", "C3294T", "G3643A", "T4428C", "T4569C", "G4677A", "A4693G", "A4817G", "G4864A", "A5287G", "A5462G", "C5472T", "A5720G", "A5734G", "A6022G", "-6201G", "T6325G", "C6631A", "G6638A", "A6807G", "-6830C", "-6831C", "-6833A", "-6834A", "T6838-", "A6936G", "-6953T", "-6954A", "-6959A", "-6965A", "-6966C", "-6980G", "-6984C", "-6985A", "-6994A", "C7153A", "G7160A", "A7256G", "G7552A", "C7625T", "G7688A", "A7720T", "A7722T", "G7790A", "G7846A", "C7950T", "G8050A", "A8099G", "A8258T", "A8367-", "G8368-", "T8371-", "G8373-", "T8374-", "T8375-", "G8376-", "G8377-", "A8378-", "C8666A", "T8701A", "A8822G", "G8892A"], "INT": ["I218T", "V265A"], "RT-p51": ["A286T", "T400I"], "RT-p66": ["A286T", "T400I"], "gp120": ["D105N", "-124G", "N157E", "H259Q", "E262K", "A291T", "T292N", "-367Y", "-378N", "-380T", "-385T", "I468V"], "gp41": ["Q108Y", "D129N", "Q139H", "N140I", "D163N", "P216L", "I266V", "I319L"], "nef": ["S9-", "I10-", "V11-", "G12-", "F120Y", "E184K"], "p17": ["K91R", "A119K", "D121A", "-124K"], "p6": ["S3N"], "rev": ["A68T", "D84G"], "tat": ["T40R", "P81S"], "vif": ["V31I", "R93K"], "vpu": ["K38R", "I43V"]}, "labels": {"aa": "INT: I218T, V265A; RT-p51: A286T, T400I; RT-p66: A286T, T400I; gp120: D105N, -124G, N157E, H259Q, E262K, A291T, T292N, -367Y, -378N, -380T, -385T, I468V; gp41: Q108Y, D129N, Q139H, N140I, D163N, P216L, I266V, I319L; nef: S9-, I10-, V11-, G12-, F120Y, E184K; p17: K91R, A119K, D121A, -124K; p6: S3N; rev: A68T, D84G; tat: T40R, P81S; vif: V31I, R93K; vpu: K38R, I43V"}}, "children": [{"name": "DQ369981", "node_attrs": {"div": 0.15105999999999997, "accession": "DQ369981", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03ZAPS140MB1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A138G", "C200G", "T201C", "G224A", "T303A", "T377C", "A412G", "C419A", "T424A", "C434T", "T495G", "A521C", "C525A", "A530G", "T567C", "A604C", "A645G", "-705A", "-706A", "-707A", "A715-", "G716-", "T859C", "G879A", "G880C", "T902C", "A941G", "G1002A", "A1112C", "A1160G", "G1313A", "T1358C", "T1422C", "G1430A", "C1448T", "T1451C", "-1453T", "G1477A", "A1497G", "A1508G", "G1543A", "T1574C", "C1598T", "A1601G", "G1726A", "G1766A", "G1769A", "A1771G", "A1781G", "T1797G", "C1831T", "A1857G", "G1858A", "A1887G", "A1903C", "A1932G", "A1969G", "A2056G", "G2074A", "G2131A", "G2134A", "T2195C", "C2202A", "G2210A", "A2212T", "G2224A", "A2230G", "A2260G", "G2293A", "A2362G", "T2425C", "A2473G", "C2488T", "A2592G", "C2596A", "G2602T", "C2613T", "T2672C", "G2752A", "T2778A", "T2779G", 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"G8426A", "A8435G", "A8441T", "C8489T", "T8504C", "A8823G", "C8825T", "C8835T", "A8859G", "T8860C", "G8861A", "A8873G", "T8883C", "G8888A", "T8922A", "A8934C", "A8935T", "A8936G", "C8951T", "-8970G", "-8971A", "-8972C", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978C", "-8979A", "T9029A", "C9078T", "C9132A"], "INT": ["I31V", "K34R", "L74I", "E157D", "D167E", "I208M", "K215R", "S255G", "K269R"], "RT-p51": ["A36E", "E39N", "K166R", "E169D", "A173V", "L228Q", "P272S", "K287R", "P294T", "D335G", "E399N"], "RT-p66": ["A36E", "E39N", "K166R", "E169D", "A173V", "L228Q", "P272S", "K287R", "P294T", "D335G", "L377M", "E399N", "V458I", "I466V", "A508G", "Q509H", "Q520K", "K527E"], "gp120": ["V2G", "K18T", "N64Y", "S82N", "N102S", "-107T", "T110-", "-123K", "N159D", "T170A", "S181T", "L237I", "G240E", "N251D", "V264I", "E265A", "T269E", "K307E", "-308K", "K309D", "K312N", "E315Q", "K316G", "K318G", "K319E", "K332S", "I343V", "K361G", "-366I", "-368S", "N369P", "-374T", "-375Y", "-376R", "-377P", "-379G", "-381S", "-382D", "-383S", "W399R", "E401G", "A412E", "N414S", "K418N", "N420T", "N432K", "N433A", "N434M", "K472G", "R475G", "R480K"], "gp41": ["S42N", "L70P", "K77Q", "L84I", "N96A", "E109D", "D113G", "N114S", "R122K", "N125S", "R133T", "D137E", "K144Q", "S154K", "N156Q", "N160S", "E215G", "N239S", "Q259H", "A267T", "E272Q", "R277S", "G278S", "L304F", "I309V", "A310V", "V321L", "R324S", "C326Y", "R334T"], "nef": ["E18D", "I20L", "N161D", "M173A", "K198L"], "p17": ["K26R", "H28Q", "M30K", "S54A", "K62N", "L64I", "E90A", "I104V"], "p2": ["-10I", "A11N"], "p24": ["L43S", "G50T", "V91I", "S225G"], "p6": ["E6T", "A12E", "R16K", "K31R", "S40A", "S51F"], "p7": ["S4N", "R11G", "R26K"], "pro": ["K20R", "D30G", "E35D", "K45R"], "rev": ["A15V", "T18I", "K20R", "S54Q", "I78L", "C85D", "G90A", "G96Q"], "tat": ["K19Q", "K24N", "H29C", "I69V", "N80D"], "vif": ["R34K", "Y40F", "S53A", "L59V", "K67T", "R92K", "M109I", "D117E", "K122N", "D134E", "I154L", "I166V", "T180I"], "vpr": ["P37I", "I61V", "I83V", "R85Q"], "vpu": ["L16F", "I20V", "L33V", "R37Q", "K44R", "I46-", "R47I"]}, "labels": {"aa": "INT: I31V, K34R, L74I, E157D, D167E, I208M, K215R, S255G, K269R; RT-p51: A36E, E39N, K166R, E169D, A173V, L228Q, P272S, K287R, P294T, D335G, E399N; RT-p66: A36E, E39N, K166R, E169D, A173V, L228Q, P272S, K287R, P294T, D335G, L377M, E399N, V458I, I466V, A508G, Q509H, Q520K, K527E; gp120: V2G, K18T, N64Y, S82N, N102S, -107T, T110-, -123K, N159D, T170A, S181T, L237I, G240E, N251D, V264I, E265A, T269E, K307E, -308K, K309D, K312N, E315Q, K316G, K318G, K319E, K332S, I343V, K361G, -366I, -368S, N369P, -374T, -375Y, -376R, -377P, -379G, -381S, -382D, -383S, W399R, E401G, A412E, N414S, K418N, N420T, N432K, N433A, N434M, K472G, R475G, R480K; gp41: S42N, L70P, K77Q, L84I, N96A, E109D, D113G, N114S, R122K, N125S, R133T, D137E, K144Q, S154K, N156Q, N160S, E215G, N239S, Q259H, A267T, E272Q, R277S, G278S, L304F, I309V, A310V, V321L, R324S, C326Y, R334T; nef: E18D, I20L, N161D, M173A, K198L; p17: K26R, H28Q, M30K, S54A, K62N, L64I, E90A, I104V; p2: -10I, A11N; p24: L43S, G50T, V91I, S225G; p6: E6T, A12E, R16K, K31R, S40A, S51F; p7: S4N, R11G, R26K; pro: K20R, D30G, E35D, K45R; rev: A15V, T18I, K20R, S54Q, I78L, C85D, G90A, G96Q; tat: K19Q, K24N, H29C, I69V, N80D; vif: R34K, Y40F, S53A, L59V, K67T, R92K, M109I, D117E, K122N, D134E, I154L, I166V, T180I; vpr: P37I, I61V, I83V, R85Q; vpu: L16F, I20V, L33V, R37Q, K44R, I46-, R47I"}}}, {"name": "DQ396391", "node_attrs": {"div": 0.14359, "accession": "DQ396391", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03ZAPS143MB1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C152A", "T155G", "T157A", "C179A", "G206A", "C426T", "G518A", "A530C", "T539C", "A585G", "C586T", "G603C", "A620G", "G629A", "-714A", "A774C", "T775C", "A810G", "G816A", "G836A", "C872T", "G906A", "G908A", "C950T", "T983C", "A1034G", "A1089G", "T1103C", "T1143C", "C1229T", "A1256G", "C1304T", "A1374-", "T1375-", "G1376-", "G1404A", "G1443-", "C1444-", "A1445-", "A1447C", "C1448A", "-1453G", "A1454T", "-1455G", "-1456C", "-1457A", "T1491G", "T1501C", "T1505C", "T1511C", "C1541T", "T1613C", "C1615T", "G1622A", "G1664A", "G1739A", "C1768T", "C1775G", "T1954G", "T1986A", "C2105T", "A2273G", "C2467T", "T2476C", "A2593G", "A2713G", "A2755G", "C2828A", "A2829G", "A2875G", "T2905C", "C2968A", "A2985C", "A3019G", "C3023T", "T3045C", "A3080G", "C3095T", "T3112C", "C3133T", "G3211A", "C3271T", "G3334A", "G3398A", "C3399T", "A3442G", "G3451A", "A3490G", "A3524G", "A3570G", "A3592G", "A3622G", "T3778C", "G3817A", "T3889C", "G3916A", "A3923G", "C4021T", "A4030G", "T4132C", "C4234T", "A4306G", "A4498G", "A4525C", "C4585T", "G4616A", "G4737A", "G4769A", "G4859A", "C4902T", "T4907C", "A4997G", "G5051A", "A5057G", "A5087G", "A5187G", "A5233G", "T5254C", "T5274C", "T5275A", "A5302G", "C5303T", "T5354A", "T5356G", "C5384T", "A5385G", "C5397A", "A5431G", "T5445C", "C5451T", "T5454C", "A5544C", "G5563A", "A5564C", "A5576C", "T5579C", "A5613G", "A5619G", "T5678C", "G5700A", "C5727T", "G5799A", "G5800T", "C5802A", "A5805C", "G5853A", "G5856A", "G5857T", "T5862G", "G5863T", "T5870A", "A5918G", "C5924T", "A5957C", "A5959G", "T5973C", "C6007A", "A6009G", "A6020T", "A6043G", "C6165G", "A6166C", "A6173G", "C6174A", "A6180G", "A6186G", "T6187C", "C6189G", "A6191C", "A6197G", "-6198T", "T6199G", "T6202C", "-6203A", "-6204A", "-6205G", "-6206G", "-6207A", "-6208A", "-6212A", "-6213C", "-6214G", "T6238C", "A6251G", "G6267T", "C6278A", "A6311T", "A6313G", "G6328A", "C6333G", "T6334C", "T6337C", "A6376T", "T6433C", "T6457C", "A6484T", "C6488A", "G6494A", "G6532A", "C6563T", "C6632T", "A6668G", "A6669G", "C6721A", "A6723T", "T6730A", "A6733C", "T6758C", "G6771A", "A6777C", "-6778A", "A6789C", "A6799G", "G6801A", "G6808A", "A6811G", "G6818A", "A6819G", "A6825T", "-6832T", "-6838A", "C6843T", "A6845G", "T6846A", "A6848T", "A6849T", "A6850T", "T6851C", "T6852A", "T6853A", "A6854C", "A6855C", "C6858A", "A6868G", "T6874C", "G6881A", "T6904C", "A6947G", "-6948A", "-6949A", "-6951G", "-6952T", "-6955T", "-6956T", "-6957T", "-6958A", "-6960A", "-6961C", "-6962A", "-6963T", "-6964A", "-6967T", "-6981A", "-6982T", "-6983G", "-6987A", "T6988C", "G6989A", "-6990C", "-6991A", "-6995A", "-6996A", "-6997G", "-6998G", "-6999C", "-7000A", "-7003C", "-7004G", "-7005A", "-7006A", "A7100G", "C7101A", "A7118G", "A7133G", "C7134T", "-7150T", "A7156T", "G7176A", "G7182A", "A7237G", "G7246C", "T7267G", "G7268A", "C7325T", "A7373T", "A7420G", "G7492A", "G7502A", "C7590A", "T7622A", "A7627T", "A7630G", "T7633C", "T7678C", "C7699T", "A7700T", "A7714C", "T7751C", "A7771C", "C7775T", "A7818G", "A7840G", "G7885A", "T7921G", "G7947A", "G7997A", "G8019A", "A8032G", "C8044G", "A8079T", "G8111A", "C8146T", "G8152A", "G8168A", "G8170A", "A8242G", "A8266C", "A8267C", "T8298C", "A8305G", "G8335A", "C8366T", "C8406A", "G8407A", "A8441G", "A8465G", "C8488T", "T8568A", "T8569C", "A8604G", "A8636T", "A8647G", "C8648G", "T8672A", "C8688A", "A8792T", "T8829A", "A8851T", "A8870C", "A8872C", "A8874G", "G8887T", "A8947G", "T8948G", "T9012A", "C9133T"], "INT": ["I50V", "V281M"], "RT-p51": ["P4S", "I60V", "Q245R", "D291E", "E297A", "V317A", "I329V", "Q334Y", "M377L", "A435I"], "RT-p66": ["P4S", "I60V", "Q245R", "D291E", "E297A", "V317A", "I329V", "Q334Y", "A435I", "M452I", "T477A", "E492G"], "gp120": ["R1N", "V3G", "L6M", "T22A", "K35Q", "V40A", "N52S", "M56L", "T104S", "-107D", "-109S", "-111S", "-112S", "-113H", "-114N", "-115V", "-116S", "-117K", "-118E", "-119M", "-120T", "T133A", "R138I", "Q142K", "I153L", "G158K", "H212N", "V214I", "L260F", "N272G", "Y290A", "E293D", "Y302H", "S306N", "-308T", "K309E", "K312T", "K318R", "E322R", "H324L", "-328K", "T330I", "I331E", "K332F", "F333Q", "K334P", "P335Q", "K361R", "S365E", "-366S", "-368L", "-370I", "-371T", "-372D", "-373A", "-379T", "-381K", "-382A", "-383N", "-384E", "T416E", "T422A", "T427V", "N432L", "N434R", "R441K", "G443E", "K464N"], "gp41": ["L8F", "I24L", "A67T", "S107T", "R133W", "K172R", "F206L", "D232N", "D247E", "Q259L", "A270T", "V289I", "V321F", "I322L", "I332T"], "nef": ["R22K", "A49V", "L76T", "S88G", "E98D", "Y102W", "H116N", "C163S", "Q170L", "E176D", "E177A", "R178G", "R182M", "M194L", "Y202W"], "p17": ["M61I", "Q65H", "T84V", "E90Q"], "p2": ["A7-", "N8T", "-10S", "-12N"], "p24": ["I15P", "I27V", "E29K", "V59I", "S120G", "M215-"], "p6": ["P30L", "K31-", "D32-", "R33K", "-35R", "-36E"], "p7": ["S9A", "I12T", "T50I"], "pro": ["L63H"], "rev": ["E10A", "I21L", "R50K", "T62A", "R66G", "S88N", "P100S", "V102I", "C107Y", "A108T"], "tat": ["P3L", "N7K", "K19E", "H29R", "E63T", "N67T", "L68P"], "vif": ["V51I"], "vpr": ["Q28R", "N41S", "V57A", "I61M", "L84W", "S94G"], "vpu": ["-2L", "-3N", "-4L", "-5L", "-8A", "-9R", "-10V", "I24T", "A65S"]}, "labels": {"aa": "INT: I50V, V281M; RT-p51: P4S, I60V, Q245R, D291E, E297A, V317A, I329V, Q334Y, M377L, A435I; RT-p66: P4S, I60V, Q245R, D291E, E297A, V317A, I329V, Q334Y, A435I, M452I, T477A, E492G; gp120: R1N, V3G, L6M, T22A, K35Q, V40A, N52S, M56L, T104S, -107D, -109S, -111S, -112S, -113H, -114N, -115V, -116S, -117K, -118E, -119M, -120T, T133A, R138I, Q142K, I153L, G158K, H212N, V214I, L260F, N272G, Y290A, E293D, Y302H, S306N, -308T, K309E, K312T, K318R, E322R, H324L, -328K, T330I, I331E, K332F, F333Q, K334P, P335Q, K361R, S365E, -366S, -368L, -370I, -371T, -372D, -373A, -379T, -381K, -382A, -383N, -384E, T416E, T422A, T427V, N432L, N434R, R441K, G443E, K464N; gp41: L8F, I24L, A67T, S107T, R133W, K172R, F206L, D232N, D247E, Q259L, A270T, V289I, V321F, I322L, I332T; nef: R22K, A49V, L76T, S88G, E98D, Y102W, H116N, C163S, Q170L, E176D, E177A, R178G, R182M, M194L, Y202W; p17: M61I, Q65H, T84V, E90Q; p2: A7-, N8T, -10S, -12N; p24: I15P, I27V, E29K, V59I, S120G, M215-; p6: P30L, K31-, D32-, R33K, -35R, -36E; p7: S9A, I12T, T50I; pro: L63H; rev: E10A, I21L, R50K, T62A, R66G, S88N, P100S, V102I, C107Y, A108T; tat: P3L, N7K, K19E, H29R, E63T, N67T, L68P; vif: V51I; vpr: Q28R, N41S, V57A, I61M, L84W, S94G; vpu: -2L, -3N, -4L, -5L, -8A, -9R, -10V, I24T, A65S"}}}]}]}, {"name": "C_NODE_0000045", "node_attrs": {"div": 0.10273999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C152T", "T1491C", "C3095A", "C3504G", "C5221T", "T5843A", "G5848A", "C6115T", "G6121A", "-6225A", "G6328T", "A6605G", "A6669G", "A6716G", "C6729A", "A6733C", "A6789C", "A6854G", "T6932A", "-6948A", "A7995G", "G8152A", "C8386A", "G8780A"], "RT-p51": ["Q334N"], "RT-p66": ["Q334N", "T470S"], "gp120": ["N251D", "E293N", "K312A", "S360T", "S365N", "N369-"], "gp41": ["K231R"], "nef": ["A15D", "M194L"], "p17": ["D122-"], "p7": ["S9P"], "rev": ["V102I"], "vpu": ["V79D", "D81N"]}, "labels": {"aa": "RT-p51: Q334N; RT-p66: Q334N, T470S; gp120: N251D, E293N, K312A, S360T, S365N, N369-; gp41: K231R; nef: A15D, M194L; p17: D122-; p7: S9P; rev: V102I; vpu: V79D, D81N"}}, "children": [{"name": "C_NODE_0000046", "node_attrs": {"div": 0.10742999999999998, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["A379C", "C426T", "A691C", "A776G", "C788T", "A995G", "A1495G", "G1553A", "G1568A", "T1646C", "T1854C", "A1857G", "A2059G", "C2909G", "G2925A", "G3385A", "C3908A", "G4769A", "G4779A", "G5051A", "G5167A", "A5191G", "C5641T", "G5643A", "A5866G", "C6183A", "A6197-", "T6199-", "A6200-", "A6311G", "G6323-", "A6809G", "G6818A", "A6819G", "T6828-", "T6895C", "-6952T", "-6987A", "-6990A", "-6995G", "-7000A", "-7005A", "C7008A", "A7027G", "A7056G", "C7089A", "G7198A", "A7732G", "G8019A", "T8164C", "T8298C", "-8370A", "-8372A", "A8570G", "A8647G", "C8648G", "T9029A"], "INT": ["L45I"], "RT-p51": ["P272A", "R277K"], "RT-p66": ["P272A", "R277K"], "gp120": ["-112N", "I153V"], "gp41": ["N156K", "E215G", "V321L", "I332T"], "nef": ["Y102W"], "p17": ["F79Y"], "p7": ["K10R"], "pro": ["V19T", "K20R"], "rev": ["S106P"], "tat": ["N80D"], "vif": ["S36N", "V65I"]}, "labels": {"aa": "INT: L45I; RT-p51: P272A, R277K; RT-p66: P272A, R277K; gp120: -112N, I153V; gp41: N156K, E215G, V321L, I332T; nef: Y102W; p17: F79Y; p7: K10R; pro: V19T, K20R; rev: S106P; tat: N80D; vif: S36N, V65I"}}, "children": [{"name": "DQ275642", "node_attrs": {"div": 0.14367999999999997, "accession": "DQ275642", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03ZASK067B1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T201C", "G226A", "A286G", "C365G", "A378G", "A393C", "G394A", "C417A", "T419A", "A431G", "A508G", "A520G", "C531T", "T539C", "A613G", "A692G", "-699G", "-700A", "-701A", "G702-", "G703-", "A704-", "-714A", "T767C", "A770G", "A774C", "T782A", "G791A", "A956G", "C1040T", "C1078G", "T1103A", "C1115A", "A1127G", "G1192A", "T1271C", "C1292A", "T1403C", "C1448T", "-1453T", "G1477A", "G1503A", "G1543A", "G1619A", "A1644C", "C1656A", "G1661A", "G1687A", "G1740A", "A1741G", "C1748T", "C1749T", "C1751A", "A1772G", "C1795T", "A2023G", "T2062C", "C2107T", "C2129T", "G2134A", "A2212G", "T2236C", "T2269C", "T2323C", "G2329A", "C2335T", "T2347C", "C2383T", "A2406G", "G2470A", "T2527C", "C2584T", "C2596T", "A2722G", "A2727G", "T2779G", "G2872A", "T2885C", "C2890T", "C2908T", "G2914A", "G2926A", "T2932G", "T2944C", "G2950A", "C2968T", "C2975A", "A2980G", "A2986G", "T3045C", "G3070A", "A3164G", "T3181G", "A3200G", "C3201T", "A3204G", "T3224A", "C3294T", "C3307T", "C3352T", "T3450A", "C3475T", "C3649T", "A3760C", "G3817A", "G3825A", "C3826T", "A3866G", "T3904C", "G3907A", "A3949G", "C4006G", "A4027G", "C4042T", "A4087G", "G4131C", "G4195A", "T4240C", "G4264A", "A4306G", "G4354A", "A4581G", "G4687A", "A4782G", "T4976C", "A5082G", "A5087G", "C5125T", "A5159G", "A5168C", "C5171T", "T5194G", "T5228C", "T5275C", "T5354C", "G5359A", "G5363T", "G5386A", "A5433T", "T5442C", "T5515C", "G5538A", "A5567C", "C5568T", "A5570G", "T5612G", "A5613G", "A5619T", "C5620T", "A5623C", "G5624T", "-5626G", "T5678C", "C5679T", "G5683A", "T5688C", "G5725A", "G5781A", "A5868G", "G5872A", "A5907G", "A5918G", "A5958G", "C5974T", "A6022G", "T6024A", "A6159G", "C6165G", "A6166T", "A6192T", "T6193A", "A6209-", "A6232G", "T6238C", "G6284A", "G6286A", "G6314T", "C6317G", "-6323C", "T6328A", "A6332T", "A6349G", "A6362T", "A6376C", "A6406G", "T6427C", "A6438T", "T6457A", "A6458G", "A6461G", "G6475A", "A6481G", "C6496T", "A6529T", "C6548T", "G6557A", "G6566A", "G6569A", "A6570G", "G6572A", "G6573A", "G6574A", "G6575-", "A6589C", "A6620C", "G6638A", "A6668G", "C6670T", "T6673C", "A6684G", "C6717T", "C6721T", "G6725A", "G6743A", "A6775T", "-6778C", "A6781T", "C6789A", "A6790C", "A6800T", "A6810G", "A6820G", "C6829-", "-6834A", "A6841T", "C6862T", "T6863C", "T6901C", "A6910T", "A6937T", "T6943C", "A6948C", "-6949A", "-6951C", "-6953C", "-6954T", "-6955G", "-6956T", "-6957T", "-6958T", "-6959T", "-6960T", "-6961T", "-6991A", "C6993G", "-6994T", "-6996A", "-6997T", "-6998G", "-6999T", "A7002G", "-7003C", "-7004A", "-7006A", "G7026A", "C7084T", "A7085G", "T7105C", "A7149C", "-7150A", "A7154G", "T7159C", "G7160A", "A7161G", "C7162A", "T7170C", "A7171T", "C7174T", "T7217C", "A7219T", "A7221G", "T7222G", "A7223-", "A7224-", "A7225-", "T7226-", "A7227-", "T7228-", "A7229-", "A7230-", "A7231-", "G7232-", "T7233-", "G7234-", "G7235-", "T7236-", "A7237-", "G7238-", "A7239-", "A7240-", "A7241-", "T7242-", "T7243-", "A7244-", "A7245-", "G7246-", "C7247-", "C7248-", "A7249-", "T7250-", "T7251-", "G7252-", "G7253-", "G7254-", "A7255-", "A7256-", "T7257-", "A7258-", "G7259-", "C7260-", "A7261-", "C7262-", "C7263-", "A7315G", "C7325T", "G7366A", "A7420G", "A7463C", "G7477A", "C7480T", "G7492A", "G7502A", "C7511T", "A7519G", "G7552A", "A7589G", "T7604A", "C7606T", "A7621G", "G7640A", "A7677G", "G7701A", "A7711G", "A7714C", "A7722G", "T7765C", "T7867G", "A7888T", "C7950T", "A7972G", "T8066A", "C8103T", "T8122A", "C8156T", "A8161G", "G8163A", "C8189A", "A8267C", "A8275C", "T8281G", "G8330T", "G8335A", "-8369C", "A8396G", "A8409G", "A8413C", "A8465G", "C8483T", "G8531A", "A8573G", "A8643G", "T8651C", "G8729A", "T8829C", "A8844T", "A8873C", "T8883C", "A8887G", "G8905A", "C8930T", "G9007T", "A9009G", "T9012C", "A9030G", "C9075T"], "INT": ["S17N", "I31V", "I84M", "S119T", "K269R"], "RT-p51": ["K104R", "D123G", "K211R", "P294T", "V317A", "M357V", "T369V", "E370G", "T400I"], "RT-p66": ["K104R", "D123G", "K211R", "P294T", "V317A", "M357V", "T369V", "E370G", "L377M", "T400I", "M452K"], "gp120": ["N5S", "K18R", "T22A", "K35R", "V57D", "N102S", "D105V", "V106N", "-107N", "-109N", "-111I", "N113E", "I126M", "A144T", "V154L", "P155A", "N157H", "-158G", "N159K", "S160N", "E162S", "T170S", "Y195F", "N201K", "N202D", "K203E", "G235S", "A238-", "E239-", "G240-", "E241-", "K457-", "Y458-", "K459-", "V460-", "V461-", "E462-", "I463-", "K464-", "P465-", "L466-", "G467-", "I468-", "A469-", "P470-", "K472E"], "gp41": ["I4M", "L8F", "M54L", "A67T", "I72M", "N96A", "S101T", "D113N", "N125S", "R133K", "N140S", "F188L", "K195N", "P216L", "F255I", "A267V", "L296I", "I322L", "R324S", "C326W", "A343S"], "nef": ["T23A", "E24A", "I101V", "E108D", "C163R", "M168L", "E177D", "K182R", "S188N"], "p1": ["I5L", "H9N"], "p17": ["K15A", "R20Q", "H28K", "K58R", "K62R", "P66S", "D93G", "-122E", "G123K"], "p2": ["-10I", "-11N"], "p24": ["I15L", "A116G", "D128E", "R154K", "D187E", "S225G"], "p6": ["S3N", "E21R", "P24S", "T39I"], "p7": ["S4N", "V13I", "R26K"], "rev": ["S8N", "T18L", "I19V", "R42G", "L73H", "S92T", "S103F", "K105E", "T114D"], "tat": ["V4I", "K19N", "Y47H", "D64A", "H65R", "P81S"], "vif": ["R34K", "I66V", "I166V", "T180I"], "vpr": ["T19A", "I22L", "R85Q", "Q86H", "S94N"], "vpu": ["I24T", "A26T", "D40N"]}, "labels": {"aa": "INT: S17N, I31V, I84M, S119T, K269R; RT-p51: K104R, D123G, K211R, P294T, V317A, M357V, T369V, E370G, T400I; RT-p66: K104R, D123G, K211R, P294T, V317A, M357V, T369V, E370G, L377M, T400I, M452K; gp120: N5S, K18R, T22A, K35R, V57D, N102S, D105V, V106N, -107N, -109N, -111I, N113E, I126M, A144T, V154L, P155A, N157H, -158G, N159K, S160N, E162S, T170S, Y195F, N201K, N202D, K203E, G235S, A238-, E239-, G240-, E241-, K457-, Y458-, K459-, V460-, V461-, E462-, I463-, K464-, P465-, L466-, G467-, I468-, A469-, P470-, K472E; gp41: I4M, L8F, M54L, A67T, I72M, N96A, S101T, D113N, N125S, R133K, N140S, F188L, K195N, P216L, F255I, A267V, L296I, I322L, R324S, C326W, A343S; nef: T23A, E24A, I101V, E108D, C163R, M168L, E177D, K182R, S188N; p1: I5L, H9N; p17: K15A, R20Q, H28K, K58R, K62R, P66S, D93G, -122E, G123K; p2: -10I, -11N; p24: I15L, A116G, D128E, R154K, D187E, S225G; p6: S3N, E21R, P24S, T39I; p7: S4N, V13I, R26K; rev: S8N, T18L, I19V, R42G, L73H, S92T, S103F, K105E, T114D; tat: V4I, K19N, Y47H, D64A, H65R, P81S; vif: R34K, I66V, I166V, T180I; vpr: T19A, I22L, R85Q, Q86H, S94N; vpu: I24T, A26T, D40N"}}}, {"name": "JX140668", "node_attrs": {"div": 0.14727999999999997, "accession": "JX140668", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2009.0}, "Strain_name": {"value": "DEMC09ZA009"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T201A", "T392A", "G413A", "C417T", "A418G", "A507C", "C525T", "G562A", "G603A", "A607G", "A645G", "A677T", "-701G", "A779G", "C879T", "A880C", "A891T", "T897C", "A899G", "T902C", "A920G", "T944C", "A977G", "G1002A", "A1022G", "A1073G", "G1090A", "T1100C", "G1142A", "T1148C", "G1313T", "G1328A", "C1331T", "C1360G", "A1361T", "T1385C", "G1404A", "G1421A", "A1450G", "A1452-", "A1454-", "C1460T", "G1474A", "G1498A", "T1502G", "C1514T", "A1529G", "G1697A", "G1819A", "A1835G", "G1841A", "A1969G", "C1985G", "T2017G", "C2083T", "C2087T", "C2105T", "A2140G", "A2164G", "A2212C", "C2353T", "A2362G", "G2463A", "T2536C", "G2548A", "A2560G", "G2567T", "A2578G", "A2615C", "T2654C", "A2678T", "A2692G", "G2704A", "G2707A", "A2710G", "C2740T", "G2752A", "A2818G", "G2878A", "T2935C", "A3027G", "C3121T", "A3145G", "G3151A", "T3165G", "A3190G", "G3292A", "A3388G", "C3399T", "T3436C", "A3448G", "T3450C", "G3451A", "A3481C", "G3484A", "A3491G", "T3496C", "T3497A", "A3508G", "T3644A", "A3651G", "A3667G", "G3684A", "A3697C", "G3756A", "G3772A", "A3816G", "G3850T", "G3916A", "T3967C", "C3995T", "A4111G", "C4234A", "A4246G", "A4567G", "A4684G", "A4736G", "G4737A", "T4738C", "A4865G", "C4871T", "T4975A", "T5003C", "G5062T", "A5103C", "C5162T", "G5176A", "C5227G", "C5237T", "T5260C", "A5267G", "A5285C", "A5291G", "C5333T", "A5352G", "A5360G", "C5397A", "G5403A", "A5432C", "A5444C", "C5461A", "C5463A", "A5467T", "C5479A", "T5480C", "A5492T", "T5515A", "C5554T", "A5556T", "A5575G", "C5578T", "A5583T", "A5613T", "A5614G", "T5616C", "-5626A", "A5640T", "T5653A", "A5659C", "G5700A", "C5727T", "T5728A", "T5787C", "G5791-", "A5792-", "G5793-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "G5799-", "C5801A", "C5802G", "A5803G", "C5804A", "A5805G", "A5806T", "-5809G", "-5810C", "-5811G", "G5822A", "G5842A", "T5851G", "T5852G", "G5860T", "G5865A", "T5870A", "C5884T", "A5911C", "T5920C", "T5980C", "A5995G", "A6008G", "G6023C", "A6059G", "C6097T", "A6167G", "T6172A", "A6173C", "T6175A", "A6176G", "A6177T", "A6182G", "A6186C", "A6188T", "C6189G", "-6205G", "-6206T", "-6207A", "-6208A", "-6210T", "-6211G", "-6212T", "-6213T", "-6214G", "-6215A", "-6216T", "-6217G", "-6218A", "-6219T", "-6220G", "-6221A", "-6222C", "-6223T", "A6225G", "A6230G", "C6247T", "A6273G", "A6288C", "G6303A", "C6320A", "T6322-", "A6324-", "T6325-", "A6326-", "A6327-", "A6330G", "C6331G", "A6335G", "T6337G", "C6358T", "A6379G", "G6463A", "C6487T", "A6489G", "G6526A", "C6562T", "A6584G", "A6602G", "C6603A", "C6612T", "A6628C", "A6639C", "G6653A", "T6654A", "C6660T", "G6669A", "A6682G", "G6716A", "G6731A", "C6766T", "A6774C", "A6776G", "-6778G", "G6779C", "A6788G", "T6793C", "G6797A", "A6798G", "G6801A", "A6807G", "A6820T", "-6828A", "-6833C", "-6834C", "G6854C", "C6857A", "C6858A", "A6859T", "T6876C", "G6881A", "T6883C", "G6894A", "A6913G", "A6936G", "A6944T", "A6945C", "-6949T", "A6950G", "-6951A", "-6983T", "-6984T", "-6985A", "-6991C", "A6992G", "-6994A", "-6996G", "-6997G", "-6998T", "-6999C", "A7001G", "-7003T", "-7004G", "-7006C", "C7012T", "A7033G", "T7039A", "A7040G", "G7076A", "C7077G", "A7095G", "C7096A", "C7101T", "A7107T", "A7108C", "T7114C", "G7132A", "A7148G", "-7150T", "A7151G", "A7152G", "C7153A", "C7162T", "A7240G", "G7268A", "A7269G", "G7270A", "G7271T", "A7274C", "G7324A", "G7402A", "C7590A", "C7625G", "G7640C", "T7642A", "T7666G", "C7699T", "G7701T", "A7722C", "C7723T", "A7735G", "T7774C", "A7782G", "T7783C", "G7790A", "A7791G", "C7792T", "A7796T", "T7813C", "A7818G", "C7825T", "G7846A", "A7855G", "A7862T", "G7873A", "T7876C", "A7887G", "A7938G", "G7965A", "A8006G", "T8008G", "C8009A", "T8028G", "A8029G", "G8030A", "G8036A", "C8037T", "C8044A", "G8061T", "A8079T", "A8119G", "G8130A", "G8208A", "A8222T", "C8238G", "A8242G", "A8245T", "A8260T", "-8369T", "G8385A", "G8392T", "A8402G", "A8429T", "A8441G", "G8487C", "C8490T", "A8491C", "G8561A", "T8568A", "C8597T", "C8666A", "T8676C", "C8688A", "T8747C", "A8793G", "G8794A", "A8798T", "A8847T", "A8893T", "T8922C", "T8994G", "C9078T", "T9081G", "T9115C", "C9133T", "A9135G"], "INT": ["K14R", "E25D"], "RT-p51": ["P4S", "E39D", "A158S", "K174Q", "I195L", "K311R", "M357R", "M377L", "A435V"], "RT-p66": ["P4S", "E39D", "A158S", "K174Q", "I195L", "K311R", "M357R", "A435V", "M452T", "I466V", "S468T", "L517I", "N519S", "R530K", "S554N"], "gp120": ["G4E", "L6M", "E19D", "N52D", "M56I", "V57L", "K69E", "-107P", "-109D", "-111C", "-122N", "-123M", "-124G", "I126V", "K140R", "Y145S", "R150K", "L156I", "N157R", "N159-", "S160T", "S161G", "H212R", "I244V", "T250E", "A253V", "E262A", "V267K", "T269I", "T292N", "K307T", "-308E", "K309Q", "E315R", "K318R", "K319E", "E322S", "F325Y", "N334Q", "P335N", "L341P", "S347N", "K361R", "N364-", "N365-", "-377S", "-378N", "-379N", "-380D", "-381A", "-382G", "-383S", "-384D", "-385D", "I396V", "E401G", "A408S", "A412E", "N414R", "T416I", "K418I", "N432D", "N433G", "N434K", "N436D", "K472R", "A473S", "K474Q"], "gp41": ["Q108E", "D113Q", "D121E", "R133M", "D137E", "N140T", "N160S", "D163S", "T165S", "K172R", "I187F", "K195R", "N212S", "R221K", "I235V", "L242W", "A243T", "A245I", "D247E", "C253F", "Q259L", "R276H", "N287S", "S302N", "I307L", "A312G"], "nef": ["D15N", "R17I", "I20M", "A49P", "H50S", "L76M", "H116N", "R151E", "E152D", "S169C", "E184V"], "p17": ["K15T", "H28C", "K58Q", "R76K", "E90K", "K91R", "I104V", "K114N"], "p2": ["N9S", "-10N"], "p24": ["I15M", "Q50S", "T54S", "V91I", "S120N", "T210S"], "p6": ["S47N"], "p7": ["R3K", "R11K", "I12M"], "pro": ["I13V", "V15I", "L63V"], "rev": ["Q14L", "Y23F", "H53R", "S54E", "S61D", "C63Y", "T91A", "T114A"], "tat": ["N7K", "K19T", "N23T", "H29K", "S31C", "L35T", "Q39L", "Y47N", "P60S", "N67D", "L68F", "T77A", "E86K"], "vif": ["K33R", "V51T", "I130N", "R159I"], "vpr": ["H45Y", "T55A", "I61L", "I63V", "I83V"], "vpu": ["-2Q", "-3V", "-4D", "-5Y", "-6R", "-7I", "-8G", "-9V", "-10G", "L16I", "I18L", "W41R", "G72E", "D79N", "L82G"]}, "labels": {"aa": "INT: K14R, E25D; RT-p51: P4S, E39D, A158S, K174Q, I195L, K311R, M357R, M377L, A435V; RT-p66: P4S, E39D, A158S, K174Q, I195L, K311R, M357R, A435V, M452T, I466V, S468T, L517I, N519S, R530K, S554N; gp120: G4E, L6M, E19D, N52D, M56I, V57L, K69E, -107P, -109D, -111C, -122N, -123M, -124G, I126V, K140R, Y145S, R150K, L156I, N157R, N159-, S160T, S161G, H212R, I244V, T250E, A253V, E262A, V267K, T269I, T292N, K307T, -308E, K309Q, E315R, K318R, K319E, E322S, F325Y, N334Q, P335N, L341P, S347N, K361R, N364-, N365-, -377S, -378N, -379N, -380D, -381A, -382G, -383S, -384D, -385D, I396V, E401G, A408S, A412E, N414R, T416I, K418I, N432D, N433G, N434K, N436D, K472R, A473S, K474Q; gp41: Q108E, D113Q, D121E, R133M, D137E, N140T, N160S, D163S, T165S, K172R, I187F, K195R, N212S, R221K, I235V, L242W, A243T, A245I, D247E, C253F, Q259L, R276H, N287S, S302N, I307L, A312G; nef: D15N, R17I, I20M, A49P, H50S, L76M, H116N, R151E, E152D, S169C, E184V; p17: K15T, H28C, K58Q, R76K, E90K, K91R, I104V, K114N; p2: N9S, -10N; p24: I15M, Q50S, T54S, V91I, S120N, T210S; p6: S47N; p7: R3K, R11K, I12M; pro: I13V, V15I, L63V; rev: Q14L, Y23F, H53R, S54E, S61D, C63Y, T91A, T114A; tat: N7K, K19T, N23T, H29K, S31C, L35T, Q39L, Y47N, P60S, N67D, L68F, T77A, E86K; vif: K33R, V51T, I130N, R159I; vpr: H45Y, T55A, I61L, I63V, I83V; vpu: -2Q, -3V, -4D, -5Y, -6R, -7I, -8G, -9V, -10G, L16I, I18L, W41R, G72E, D79N, L82G"}}}]}, {"name": "C_NODE_0000047", "node_attrs": {"div": 0.10626999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G562A", "T897C", "A1089G", "T1735A", "C1736G", "A1738-", "G1739-", "G1740-", "A1741-", "G1742-", "G3004A", "G4677A", "G4892A", "C5162T", "-5626T", "-6212A", "-6221A", "C6285A", "G6644A", "C6721T", "T6722G", "A6723C", "T6724A", "A6732C", "T6758C", "A7156C", "C7590A", "A7771C", "T7801G", "G7947A", "G8476C", "G8795T", "A8947T"], "gp120": ["A144E", "V264I", "N272G", "Y302H", "I343V", "-385T"], "gp41": ["N166K"], "nef": ["S45T", "R151S", "M173I", "Y202F"], "p17": ["R76K"], "p2": ["N8-"], "p24": ["S120G"], "vif": ["V31I"], "vpu": ["-4L", "-8V"]}, "labels": {"aa": "gp120: A144E, V264I, N272G, Y302H, I343V, -385T; gp41: N166K; nef: S45T, R151S, M173I, Y202F; p17: R76K; p2: N8-; p24: S120G; vif: V31I; vpu: -4L, -8V"}}, "children": [{"name": "MF373178", "node_attrs": {"div": 0.16043, "accession": "MF373178", "clade_membership": {"value": "C"}, "country": {"value": "SE"}, "date": {"value": 2012.0}, "Strain_name": {"value": "075ZA"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A356T", "A367G", "A368G", "A379G", "A380G", "A386G", "A393C", "A404C", "T419G", "A508G", "G518A", "A563G", "A571T", "C572T", "T596C", "A607G", "C641T", "A666T", "A677G", "A678G", "C688T", "G690A", "T695A", "A697-", "-699T", "-700C", "-701A", "A704C", "-705A", "-706A", "-707A", "-708A", "-709G", "-710C", "-711G", "-712G", "-713C", "-714A", "G716A", "T731C", "C749T", "A770G", "G771C", "G821A", "T858C", "G905A", "G911A", "A945G", "C946T", "T974C", "A977G", "C1040T", "G1067A", "G1085A", "T1103C", "C1115G", "G1199A", "A1242G", "C1243T", "T1253C", "C1292A", "T1334A", "G1354C", "T1358A", "A1367G", "C1406T", "G1424A", "C1444-", "A1445-", "A1446-", "A1447C", "C1448A", "A1452C", "-1453A", "-1455A", "-1456C", "-1457A", "C1478T", "T1501A", "T1547C", "T1574C", "A1580G", "G1619A", "G1664A", "T1682C", "A1700C", "A1701T", "-1729T", "-1730C", "-1731G", "-1732A", "-1733G", "-1734G", "A1743-", "C1751T", "C1768A", "A1781G", "A1794C", "T1797G", "C1831T", "C1849T", "G1852A", "A1853G", "A1918G", "T1986C", "T2062C", "T2104C", "C2107T", "G2156A", "G2182A", "C2202A", "G2221A", "T2302C", "A2362G", "A2386G", "T2440C", "G2459A", "G2463A", "T2542A", "A2560G", "A2569C", "C2575T", "A2578G", "C2589T", "A2629G", "T2672C", "A2674T", "G2682A", "C2720T", "A2727G", "T2737C", "G2752A", "G2830A", "A2839C", "A2866C", "G2925A", "G2951A", "A2980G", "A3043G", "G3070A", "T3076A", "A3103G", "C3133T", "T3165G", "G3169A", "T3224A", "A3229G", "C3266T", "A3280G", "G3292A", "T3310C", "T3368C", "G3402A", "G3431T", "T3433C", "G3439A", "G3451A", "A3491G", "T3493C", "G3494A", "C3500T", "A3502G", "C3589T", "C3610T", "A3666T", "A3674C", "T3695G", "T3742C", "G3756A", "G3772A", "G3775A", "T3778C", "G3850A", "C3857T", "A3871G", "A3874C", "A3949G", "A3989G", "C3995A", "G3997T", "C4006T", "T4075C", "G4195A", "C4210T", "A4411G", "T4428C", "A4455T", "A4459G", "T4474C", "G4642A", "A4650C", "A4682C", "A4684G", "G4685A", "A4693G", "G4695A", "T4702C", "T4703C", "T4772C", "G4774A", "A4778G", "A4811G", "T4820G", "T4840C", "A4863G", "T4907C", "A4911G", "C4937A", "A4956T", "T4975C", "T4976C", "C4988T", "T5018G", "G5051A", "A5057G", "G5062T", "G5066A", "T5091C", "A5168G", "A5173G", "G5236A", "A5278G", "C5282A", "A5312G", "A5345G", "T5354C", "G5382A", "G5386A", "C5412T", "A5433T", "A5444C", "T5457G", "A5462G", "A5467T", "C5472T", "T5478C", "C5479A", "A5481G", "G5482A", "T5483C", "A5492T", "T5511A", "C5513A", "C5530A", "G5563A", "C5568T", "A5581G", "T5612G", "A5613G", "T5617A", "T5621C", "A5640T", "T5648C", "T5678C", "A5680T", "T5681G", "A5682G", "T5688C", "A5701C", "G5706A", "T5707A", "G5781T", "C5802T", "C5824A", "A5843C", "A5848G", "T5859G", "G5861A", "T5862C", "T5899A", "A5907G", "G5956T", "T5964C", "G5965A", "A6022G", "T6025C", "A6059G", "G6086A", "A6092G", "T6135C", "C6138G", "C6140G", "C6143A", "C6145G", "T6154A", "T6155C", "A6159G", "T6160C", "T6161G", "T6163C", "A6166T", "T6169G", "G6170A", "T6171G", "A6173G", "A6179G", "A6180T", "C6183G", "A6185G", "A6186C", "C6189A", "A6191G", "A6192T", "A6194G", "A6197G", "-6198C", "-6201A", "-6202C", "A6209-", "-6211G", "-6213T", "-6214G", "-6215C", "-6216T", "-6217G", "-6218G", "-6219T", "-6220G", "-6222A", "-6223G", "A6236G", "T6239G", "C6241A", "C6243T", "T6244A", "A6251G", "A6254T", "A6259C", "A6262T", "A6263G", "A6268C", "A6270C", "A6272G", "A6276T", "C6278A", "A6279G", "A6281G", "A6283T", "A6292G", "C6293A", "T6295A", "T6296G", "T6297A", "T6298G", "G6303C", "C6306T", "C6320A", "T6322A", "A6324T", "A6327C", "A6329G", "A6330T", "C6331G", "G6336T", "G6338T", "A6339C", "G6340A", "A6374G", "C6477A", "T6490G", "G6526A", "T6551C", "G6566T", "G6577A", "A6589C", "A6595G", "T6652C", "G6653A", "T6654A", "G6655T", "A6668G", "A6682G", "A6685G", "C6717T", "C6752G", "A6774C", "A6777G", "-6778G", "G6779C", "A6796G", "A6799G", "A6800C", "C6826A", "C6829T", "T6835-", "A6848T", "A6849T", "A6850G", "A6855C", "T6860C", "C6861A", "T6883C", "C6888A", "A6889T", "C6890G", "T6901A", "C6919T", "A6921T", "A6944G", "-6949T", "-6951A", "-6952T", "-6983T", "-6984C", "-6985A", "-6987C", "T6988A", "G6989C", "-6990G", "-6991G", "A6992G", "C6993G", "-6994T", "-6995T", "-6996C", "-6997A", "-6998G", "-6999C", "-7000C", "-7003T", "-7004G", "-7005G", "-7006C", "C7009A", "A7036G", "A7063G", "A7108C", "C7136T", "G7137A", "-7150A", "A7158C", "G7160A", "C7164A", "A7165C", "G7168A", "T7170C", "T7222C", "G7234A", "A7269G", "G7270A", "A7275G", "G7293A", "G7295C", "G7309A", "A7315G", "C7325A", "T7403C", "G7477A", "A7507G", "A7517C", "A7533C", "C7574G", "G7594A", "C7595T", "T7609C", "T7622A", "C7623A", "T7633A", "A7643C", "G7660A", "A7677G", "A7722T", "A7735C", "A7756C", "G7764A", "A7773G", "G7801A", "T7867A", "T7870G", "C7941A", "C7950T", "G7961A", "A7964G", "A7998G", "G8001A", "A8006G", "T8008G", "C8009A", "G8019C", "A8029G", "G8030T", "C8051A", "C8062T", "C8065T", "A8069C", "G8070T", "T8094C", "T8115C", "C8120A", "G8134C", "C8146T", "A8162G", "G8168A", "G8170A", "G8188A", "A8266T", "G8283A", "C8328T", "C8366T", "-8369C", "-8370A", "-8372A", "G8412A", "A8413T", "C8510T", "T8568G", "A8584T", "A8647G", "C8648G", "T8651C", "G8660A", "C8666G", "A8822G", "T8829A", "T8831C", "C8835T", "A8859G", "G8864T", "G8892C", "A8909G", "G8924A", "C8928A", "G8929A", "C8930G"], "INT": ["I72V", "L74I", "I218T", "Y227F"], "RT-p51": ["V21I", "A36E", "E122K", "T165I", "I178M", "G196E", "K211R", "E248D", "R277K", "A286T", "M357R", "G436E"], "RT-p66": ["V21I", "A36E", "E122K", "T165I", "I178M", "G196E", "K211R", "E248D", "R277K", "A286T", "M357R", "L377M", "G436E", "A446S", "M452I", "I466V", "V467I", "Q524L", "K527Q", "S534A", "S554N"], "gp120": ["V2G", "V3T", "K18R", "E34D", "V37A", "K69E", "E78K", "I80V", "L94S", "T95S", "P96A", "L97M", "N102S", "C103G", "D105K", "V106S", "-107A", "-109V", "T110S", "-111A", "-112N", "N113V", "-114D", "-115A", "-116N", "-124E", "N128D", "C129G", "S130L", "T133A", "T134S", "E136D", "I137V", "R138S", "D139A", "K140E", "K141I", "Q142R", "K143D", "L147I", "F148E", "R150T", "P151L", "L156V", "N157I", "-158V", "N159T", "S160V", "S161T", "E162I", "T174A", "T208K", "H212Q", "A238S", "R245S", "V267N", "T288V", "T292A", "I294A", "Q300E", "K307T", "-308R", "K309Q", "A312T", "K316R", "H324Q", "P326-", "N327-", "-328N", "K332L", "N334A", "S336H", "T345N", "H346D", "N349K", "Y356F", "N364D", "-366N", "-373S", "-374T", "-375R", "-376G", "-377S", "-378A", "-379N", "-380G", "K418N", "R428Y", "N432K", "N436T", "T437N", "I439T", "K472G", "K474R", "R480K", "E481Q"], "gp41": ["I4M", "L8I", "I72L", "K77T", "L91V", "P98S", "S107N", "D110E", "N114H", "N125S", "D137E", "N140I", "K144N", "S154N", "N157S", "F188L", "P213Q", "P216L", "G220R", "R221G", "D232G", "R233K", "I235V", "N239T", "A243S", "S256L", "I264T", "V271A", "L273I", "N287G", "V289I", "V321F", "R327K", "A342V"], "nef": ["E24M", "L76V", "Y81F", "Y102W", "C163S", "I173V", "E174D", "E184Q", "R196K"], "p17": ["V7I", "E11G", "K15R", "H28Q", "K58R", "M61I", "K91R", "S111C", "T115A", "A118V", "A119K", "-127D"], "p2": ["-10Q", "-11T", "-12N"], "p24": ["A14P", "T72V", "M118I", "D128E", "T171V", "D187E", "G208A", "S225G"], "p6": ["T8S", "T22A", "P30Q", "T39P", "S40A", "S51F"], "p7": ["I12N"], "pro": ["L63P"], "rev": ["S5R", "T18I", "R38Q", "K39R", "H53R", "S54E", "E57D", "S61V", "A68E", "P72S", "L73F", "Q74P", "T91N", "G96Q", "P100S", "K105R", "C107Y", "A108T"], "tat": ["V4I", "K19N", "N23T", "C27W", "H29R", "S31C", "L35M", "V36T", "Q39L", "S46Y", "E63K", "I69V", "P81S"], "vif": ["R19K", "N22H", "K33R", "G37R", "F39S", "R63K", "D78E", "V85A", "R93G", "M109V", "D117E", "I124L", "I130T", "R159I"], "vpr": ["I22V", "L60I", "I70V", "A93T", "S94N"], "vpu": ["-2W", "-3N", "L4I", "-5P", "-6D", "-7T", "-9D", "-10Y", "A11R", "I13G", "I14V", "I24T", "I25W", "K32Q", "L34I", "E58D", "H73N", "D79A", "N81D"]}, "labels": {"aa": "INT: I72V, L74I, I218T, Y227F; RT-p51: V21I, A36E, E122K, T165I, I178M, G196E, K211R, E248D, R277K, A286T, M357R, G436E; RT-p66: V21I, A36E, E122K, T165I, I178M, G196E, K211R, E248D, R277K, A286T, M357R, L377M, G436E, A446S, M452I, I466V, V467I, Q524L, K527Q, S534A, S554N; gp120: V2G, V3T, K18R, E34D, V37A, K69E, E78K, I80V, L94S, T95S, P96A, L97M, N102S, C103G, D105K, V106S, -107A, -109V, T110S, -111A, -112N, N113V, -114D, -115A, -116N, -124E, N128D, C129G, S130L, T133A, T134S, E136D, I137V, R138S, D139A, K140E, K141I, Q142R, K143D, L147I, F148E, R150T, P151L, L156V, N157I, -158V, N159T, S160V, S161T, E162I, T174A, T208K, H212Q, A238S, R245S, V267N, T288V, T292A, I294A, Q300E, K307T, -308R, K309Q, A312T, K316R, H324Q, P326-, N327-, -328N, K332L, N334A, S336H, T345N, H346D, N349K, Y356F, N364D, -366N, -373S, -374T, -375R, -376G, -377S, -378A, -379N, -380G, K418N, R428Y, N432K, N436T, T437N, I439T, K472G, K474R, R480K, E481Q; gp41: I4M, L8I, I72L, K77T, L91V, P98S, S107N, D110E, N114H, N125S, D137E, N140I, K144N, S154N, N157S, F188L, P213Q, P216L, G220R, R221G, D232G, R233K, I235V, N239T, A243S, S256L, I264T, V271A, L273I, N287G, V289I, V321F, R327K, A342V; nef: E24M, L76V, Y81F, Y102W, C163S, I173V, E174D, E184Q, R196K; p17: V7I, E11G, K15R, H28Q, K58R, M61I, K91R, S111C, T115A, A118V, A119K, -127D; p2: -10Q, -11T, -12N; p24: A14P, T72V, M118I, D128E, T171V, D187E, G208A, S225G; p6: T8S, T22A, P30Q, T39P, S40A, S51F; p7: I12N; pro: L63P; rev: S5R, T18I, R38Q, K39R, H53R, S54E, E57D, S61V, A68E, P72S, L73F, Q74P, T91N, G96Q, P100S, K105R, C107Y, A108T; tat: V4I, K19N, N23T, C27W, H29R, S31C, L35M, V36T, Q39L, S46Y, E63K, I69V, P81S; vif: R19K, N22H, K33R, G37R, F39S, R63K, D78E, V85A, R93G, M109V, D117E, I124L, I130T, R159I; vpr: I22V, L60I, I70V, A93T, S94N; vpu: -2W, -3N, L4I, -5P, -6D, -7T, -9D, -10Y, A11R, I13G, I14V, I24T, I25W, K32Q, L34I, E58D, H73N, D79A, N81D"}}}, {"name": "C_NODE_0000048", "node_attrs": {"div": 0.11531999999999999, "clade_membership": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["C200T", "A301G", "A412G", "A989C", "G1002A", "C1175T", "C1211T", "G1404A", "A1450G", "-1453C", "G1687A", "-1732G", "G1972A", "T1987A", "G2032A", "G2131A", "A2161G", "A2446G", "A2995G", "T3139C", "C3307T", "A3403G", "T3497C", "A3607G", "C3652T", "G3766A", "T3889C", "A4074T", "C4141T", "G4549A", "T4868C", "T4916C", "C5125T", "C5237T", "T5281G", "G5448A", "C5679T", "T5852A", "G5856A", "A6020C", "A6030G", "T6172A", "-6203A", "-6205T", "-6208A", "-6210A", "-6214T", "-6223A", "T6250G", "G6323A", "G6725A", "G6771C", "A6776G", "G6779A", "A6811G", "T6874C", "A7133C", "C7134T", "A7151G", "C7153A", "A7161G", "A7256G", "T7703C", "A7714C", "G7790A", "G7846A", "G7869C", "C8044A", "A8079T", "A8099G", "T8101G", "G8102A", "A8260T", "T8264G", "G8385A", "A8386G", "A8409G", "A8458G", "T8460C", "A8534G", "C8590G", "C8684T", "T8701A", "A8823G", "G8861A"], "INT": ["Y100F"], "RT-p66": ["S468P"], "gp120": ["M56L", "E59G", "-109A", "-115S", "-120I", "T288A", "S306T", "-328K", "T427L", "N433E", "I468V"], "gp41": ["D163N", "G189A", "D247E", "Q259L", "I266V", "A267T"], "nef": ["D15S", "T23A", "K39R", "Y40H", "A83G", "E108D", "F120Y", "N161D"], "p17": ["K26R"], "p6": ["S3N", "E20T", "T22P", "A25-"], "pro": ["V19I"], "rev": ["D84G", "C85D"], "vif": ["T180I"], "vpr": ["H45Y"], "vpu": ["-2L", "-5L", "-6A", "L82*"]}, "labels": {"aa": "INT: Y100F; RT-p66: S468P; gp120: M56L, E59G, -109A, -115S, -120I, T288A, S306T, -328K, T427L, N433E, I468V; gp41: D163N, G189A, D247E, Q259L, I266V, A267T; nef: D15S, T23A, K39R, Y40H, A83G, E108D, F120Y, N161D; p17: K26R; p6: S3N, E20T, T22P, A25-; pro: V19I; rev: D84G, C85D; vif: T180I; vpr: H45Y; vpu: -2L, -5L, -6A, L82*"}}, "children": [{"name": "GQ999980", "node_attrs": {"div": 0.14989, "accession": "GQ999980", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2005.0}, "Strain_name": {"value": "CAP88_5w_F2"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T145-", "C146-", "A147-", "G148-", "A149-", "C150-", "C151-", "T152-", "T153-", "T154-", "T155-", "T156-", "G157-", "G158-", "T159-", "A161-", "G162-", "T163-", "G164-", "T165-", "G240A", "T306G", "G354A", "A371G", "C426T", "T495G", "A520C", "T560C", "A562T", "T570C", "G603A", "G619A", "G648A", "T668C", "G690A", "T695G", "C698T", "G702-", "-705C", "-706A", "-707G", "-708A", "-709G", "G717A", "T748C", "C749T", "A770C", "G771C", "C823G", "C876T", "A881C", "A995G", "T1003A", "G1005C", "A1022G", "C1060A", "G1109A", "G1139A", "G1192A", "C1229T", "C1350T", "A1400G", "A1433G", "A1452G", "C1491T", "G1543A", "T1547C", "A1567G", "A1644G", "A1657T", "A1691G", "A1700G", "C1710T", "T1728C", "-1729A", "-1730G", "-1731A", "-1733A", "-1734A", "A1735C", "G1736A", "-1738A", "-1739G", "-1740C", "-1741C", "-1742A", "A1746G", "C1748T", "C1751A", "G1752C", "T1754A", "C1755G", "G1757A", "A1758G", "C1761G", "T1832A", "A1894G", "T2095C", "C2105T", "A2179G", "G2182A", "A2185G", "A2212G", "T2245C", "T2251C", "T2257C", "A2273G", "C2383T", "T2520C", "G2548A", "A2592G", "C2605T", "G2681A", "A2686G", "G2707A", "G2842A", "T2885C", "C2953T", "A2962G", "A3095G", "T3172A", "A3192G", "G3211A", "T3225C", "G3340A", "G3379A", "C3399T", "A3400G", "T3424C", "A3447G", "G3451A", "A3507G", "A3529G", "A3637C", "A3658C", "A3664G", "T3695G", "C3712T", "G3796A", "G3808A", "G3825A", "A3862G", "A3881G", "T3898G", "T3904C", "A4027G", "C4042T", "G4109A", "C4140T", "G4148C", "A4270G", "T4276G", "C4318T", "G4354A", "C4471T", "G4516A", "T4569C", "G4636A", "C4844T", "A4867G", "C4937A", "T4938A", "A4949G", "A4958C", "T4975A", "A5000G", "A5021G", "A5103C", "A5151C", "A5159G", "G5176A", "T5221C", "G5225A", "A5267G", "T5286C", "C5333T", "A5335G", "G5336T", "A5352G", "T5356G", "C5358A", "C5371T", "A5372G", "A5396G", "A5444C", "T5475C", "T5478C", "G5519A", "G5538A", "C5568T", "A5614G", "G5632A", "C5641T", "C5684T", "A5689C", "A5790C", "G5842A", "G5853A", "A5866G", "C5878T", "C5884T", "C5949G", "T5951C", "A5958G", "C5984T", "C6007T", "T6175A", "A6179G", "A6180C", "T6184A", "A6185C", "C6190T", "T6196G", "-6198G", "T6199C", "-6201T", "-6202G", "-6204A", "-6206G", "-6207G", "A6209G", "-6211A", "-6213T", "-6215G", "-6216A", "-6217C", "-6218A", "-6219T", "-6220G", "-6222A", "A6232G", "A6261G", "A6270G", "T6271G", "A6282C", "A6324G", "T6328G", "A6329G", "C6331A", "C6333G", "T6334C", "A6335T", "G6336C", "A6354G", "T6511C", "G6572A", "G6573A", "C6613T", "A6640G", "G6647A", "A6649T", "C6660T", "A6706G", "T6738C", "C6745T", "A6746C", "-6778C", "A6780G", "A6786T", "A6788G", "G6801A", "-6830C", "-6831C", "-6832T", "-6833A", "-6834A", "T6838A", "A6840C", "C6843A", "A6855C", "A6905G", "A6931G", "A6932T", "A6934G", "A6947G", "-6949G", "A6950-", "-6987A", "-6990A", "-6991G", "-6994A", "-6995G", "-6996A", "-6997A", "-6998A", "-6999C", "-7000A", "-7003C", "-7004A", "-7005C", "-7006A", "A7093G", "A7108C", "A7113G", "G7132A", "-7150C", "C7174T", "G7234A", "A7245G", "G7246A", "T7267C", "T7308C", "G7428A", "T7473G", "G7502A", "A7517G", "T7537C", "A7628G", "T7633G", "T7642A", "G7688C", "T7747C", "A7799C", "G7831A", "T7876C", "G7885A", "A7938G", "C8005A", "A8006G", "T8035G", "G8036T", "C8037T", "T8047C", "C8048A", "G8050C", "A8113G", "A8152G", "G8188A", "G8208A", "G8216A", "A8222T", "G8231A", "A8255G", "T8256G", "A8267T", "T8279G", "C8291T", "G8292A", "-8369C", "-8370A", "-8372A", "G8414A", "A8441G", "T8451C", "C8483T", "T8558C", "T8568G", "A8656G", "C8688A", "C8699T", "C8813T", "C8906T", "T8922C", "-8970G", "-8971C", "-8972T", "-8973T", "-8974T", "-8975C", "-8976C", "-8977G", "-8978C", "-8979C", "A8980T", "G8991A", "C8993T", "T8994G", "A8998-", "T9000G", "C9006G", "G9008-", "C9132T", "G9138-"], "INT": ["S17N", "I36V", "D41E", "I84M", "V112I", "T122I", "A125P", "D167E", "V265A"], "RT-p51": ["P4S", "I60V", "D123G", "I142T", "K166R", "G196R", "N334D", "K366R", "M377S", "A435V"], "RT-p66": ["P4S", "I60V", "D123G", "I142T", "K166R", "G196R", "N334D", "K366R", "L377S", "A435V", "K451R", "M452I", "E471G", "E514D", "S534A"], "gp120": ["R1K", "A32G", "Y33H", "K35R", "H44Y", "D105N", "-107T", "-111H", "-112T", "-114K", "-116M", "-117N", "-118G", "-119E", "-121D", "-122M", "-123K", "-124E", "I126M", "N132K", "E136G", "D139G", "K143T", "N157S", "-158K", "N159E", "N167S", "G240K", "E265N", "T269I", "G272S", "I294A", "I298L", "-308D", "K309R", "N311I", "K329T", "T330K", "N334A", "R351G", "T360S", "N365E", "-378N", "-379E", "-380T", "-381E", "-382T", "-383N", "-384T", "K418N", "N420S", "N436G", "K464R", "K472E"], "gp41": ["V2A", "S42N", "L57R", "A67T", "I72V", "T109A", "D110E", "D113E", "D129H", "K166Q", "M176I", "N212S", "I235V", "N239S", "A245F", "L249I", "N287S", "S302N", "D305N", "I307L", "A310T", "I318G", "I322L", "C326G", "R330Y"], "nef": ["L76V", "K105R", "H116N"], "p1": ["I5V", "H9L"], "p17": ["V7I", "S54A", "K62T", "K76I", "F79H", "E90K", "R95Q", "E105K", "A119K", "G123-", "V128-"], "p2": ["-10S", "-11A", "-12N"], "p24": ["L6P", "Q13H", "A14P", "A31G", "P49S", "Q50H", "V91N", "A92P", "T110N", "R154K", "P207S"], "p6": ["P11S", "F17Q", "-18N", "-19R", "P24A", "-25P", "K27A", "Q28E"], "p7": ["P9S", "R26K", "K34R"], "pro": ["S12T"], "rev": ["A2T", "S8N", "T18I", "H53S", "C63V", "S67H", "A68P", "S89G", "I102V"], "tat": ["N7S", "N23T", "G48D", "T77A"], "vif": ["R17K", "S36N", "Y94C", "D117E", "S118T", "I130N", "M189L"], "vpr": ["N16T", "T19A", "G41S", "T55A", "I61T", "Q77R", "I83V", "L84W", "A89V"], "vpu": ["-3D", "-7R", "-9I", "-10G", "A26V", "I28L", "D79N"]}, "labels": {"aa": "INT: S17N, I36V, D41E, I84M, V112I, T122I, A125P, D167E, V265A; RT-p51: P4S, I60V, D123G, I142T, K166R, G196R, N334D, K366R, M377S, A435V; RT-p66: P4S, I60V, D123G, I142T, K166R, G196R, N334D, K366R, L377S, A435V, K451R, M452I, E471G, E514D, S534A; gp120: R1K, A32G, Y33H, K35R, H44Y, D105N, -107T, -111H, -112T, -114K, -116M, -117N, -118G, -119E, -121D, -122M, -123K, -124E, I126M, N132K, E136G, D139G, K143T, N157S, -158K, N159E, N167S, G240K, E265N, T269I, G272S, I294A, I298L, -308D, K309R, N311I, K329T, T330K, N334A, R351G, T360S, N365E, -378N, -379E, -380T, -381E, -382T, -383N, -384T, K418N, N420S, N436G, K464R, K472E; gp41: V2A, S42N, L57R, A67T, I72V, T109A, D110E, D113E, D129H, K166Q, M176I, N212S, I235V, N239S, A245F, L249I, N287S, S302N, D305N, I307L, A310T, I318G, I322L, C326G, R330Y; nef: L76V, K105R, H116N; p1: I5V, H9L; p17: V7I, S54A, K62T, K76I, F79H, E90K, R95Q, E105K, A119K, G123-, V128-; p2: -10S, -11A, -12N; p24: L6P, Q13H, A14P, A31G, P49S, Q50H, V91N, A92P, T110N, R154K, P207S; p6: P11S, F17Q, -18N, -19R, P24A, -25P, K27A, Q28E; p7: P9S, R26K, K34R; pro: S12T; rev: A2T, S8N, T18I, H53S, C63V, S67H, A68P, S89G, I102V; tat: N7S, N23T, G48D, T77A; vif: R17K, S36N, Y94C, D117E, S118T, I130N, M189L; vpr: N16T, T19A, G41S, T55A, I61T, Q77R, I83V, L84W, A89V; vpu: -3D, -7R, -9I, -10G, A26V, I28L, D79N"}}}, {"name": "DQ011172", "node_attrs": {"div": 0.15383, "accession": "DQ011172", "clade_membership": {"value": "C"}, "country": {"value": "ZA"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04ZASK127B1"}, "LANL_subtype": {"value": "C"}}, "branch_attrs": {"mutations": {"nuc": ["T303A", "A336G", "G361A", "A379G", "C417A", "T419A", "A435T", "T466A", "A494C", "A512G", "G518A", "C558A", "T567C", "A571T", "A585G", "C586T", "A592T", "A599G", "A606G", "A607G", "T614G", "C618A", "A666T", "C669T", "A678G", "G686A", "A691C", "A692G", "-701G", "C788T", "G836A", "A866G", "A1016G", "G1085A", "C1115A", "G1142A", "T1148C", "G1157A", "A1442C", "A1446C", "C1448A", "A1449G", "A1476G", "A1487G", "T1501A", "C1610G", "C1714T", "A1725G", "-1729T", "-1730C", "-1731G", "-1733G", "-1734G", "G1737-", "G1752A", "C1767A", "C1768A", "A1770C", "A1772G", "C1795T", "A1843G", "A1903C", "T1986C", "A2005G", "A2029G", "G2042A", "A2178C", "A2179T", "C2202A", "C2353T", "G2463A", "T2499C", "G2602A", "G2714A", "T2735C", "G2761A", "A2764G", "T2845G", "A2923G", "G2926A", "G2951A", "G3016A", "A3031G", "A3043G", "C3055T", "A3071G", "G3169A", "T3224C", "T3225A", "A3280G", "A3316G", "T3355A", "A3435G", "A3449C", "T3450A", "G3463A", "G3487A", "T3493A", "A3535T", "C3665G", "A3769G", "G3772A", "G3808T", "C3865T", "A3925G", "A3931G", "G3952A", "A3989G", "A4060G", "A4111G", "C4123T", "G4145A", "C4146A", "C4162T", "G4175A", "G4219A", "C4234T", "A4279G", "C4311T", "A4376G", "A4567G", "T4655C", "G4664A", "T4674C", "G4687A", "A4693G", "A4760C", "G4765A", "G4769T", "A4781G", "A4786C", "T4820G", "T4851C", "C4871A", "G4888A", "C4898T", "A4950C", "A4974T", "C4988A", "T5006G", "C5019T", "A5033T", "G5045A", "A5046C", "A5087C", "A5122G", "G5128A", "A5173G", "T5228C", "A5230T", "G5236A", "A5240G", "T5263C", "C5280T", "A5291C", "A5293G", "T5354A", "G5357A", "A5360G", "A5388G", "C5412A", "T5430A", "A5460G", "C5472T", "C5479T", "A5499G", "T5579C", "T5599A", "-5600T", "-5601A", "-5602T", "A5615G", "G5636C", "A5644G", "A5655C", "A5665T", "A5703G", "T5705G", "A5737G", "G5857T", "T5859G", "A5907C", "A5908T", "A5946G", "G5956C", "A5958C", "T5973C", "C6020T", "G6079A", "C6097T", "T6154C", "A6167G", "T6178A", "A6182G", "T6184C", "A6186C", "A6188T", "C6190A", "A6194G", "A6195G", "-6198A", "A6200G", "-6201C", "-6202C", "-6204T", "-6206T", "-6207T", "-6211T", "-6213G", "-6215A", "-6216C", "-6217A", "-6218G", "-6219A", "-6220C", "-6222T", "G6224A", "A6234G", "A6248G", "C6252T", "A6273G", "A6276G", "A6277G", "A6279G", "G6303A", "C6306A", "C6320A", "T6325C", "A6326T", "A6327C", "A6330G", "A6332T", "G6336A", "T6337G", "A6353C", "A6379G", "T6395A", "A6461G", "A6489G", "T6493C", "G6494A", "A6538C", "G6574A", "G6601A", "C6618T", "A6628G", "A6644C", "C6667A", "A6668G", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "A6692G", "G6694T", "-6697A", "-6698A", "-6699G", "-6700G", "-6701A", "-6702T", "T6720A", "T6730G", "A6736C", "C6752A", "A6773G", "A6777G", "-6778A", "C6789T", "G6803A", "A6814G", "G6821A", "A6825T", "-6833C", "-6834C", "A6840G", "A6848C", "A6849T", "A6850C", "G6854A", "A6856C", "C6857T", "T6883C", "T6901C", "T6916C", "A6945C", "T6946A", "-6949C", "-6951C", "-6952A", "-6953A", "-6954G", "-6955T", "-6956T", "-6957A", "-6958T", "-6959T", "-6960C", "-6961A", "-6962A", "-6963G", "-6964C", "-6965A", "-6966C", "-6967A", "-6968G", "-6969C", "-6970C", "-6971A", "-6972A", "-6973C", "-6974A", "-6975C", "-6976A", "A6986-", "T6988-", "G6989-", "A6992-", "C6993-", "A7001-", "A7002-", "A7015G", "A7030C", "A7032G", "A7036G", "T7039C", "G7055C", "-7150T", "A7154G", "G7160A", "C7162A", "T7170C", "A7241C", "A7249T", "G7268A", "C7320T", "T7323C", "G7477A", "A7540G", "G7543A", "A7549G", "G7594A", "T7604A", "T7622A", "C7623A", "A7626T", "T7666G", "A7676G", "A7732G", "A7742C", 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V214I, T255I, I264L, S278G, F289V, A291T, T292K, N293A, Q300K, K307E, -308G, A312I, K316R, V317I, E323K, H324L, K328R, K329-, K332L, P335S, N364T, -366T, -367S, -368Y, -369S, -370S, -371T, -372A, -373N, -374T, K393R, E401Q, N434D, N436R, I439T, I463L; gp41: A6V, V7A, S101T, S107N, Q108L, D121E, N125D, K147Q, S154K, N156D, N157S, K166R, I193V, V238A, Q290L, K298G, I319L, V321G, L345I; nef: G3N, S9-, I10-, V11-, G12-, S15R, E98D, L100I, Q125D, A156D, E176D, E177D, K182M, E184K; p17: M1V, R9K, K15R, H28K, I34L, F44Y, M61I, L75I, T84V, Y86F, K91G, D93E, S111C, Q112*, T115A; p2: A7G, -8T; p24: V91I, M118I, D128E; p6: A12V, R16G, -18G, -19E, E21T, P26-, P30K, K31Q, T39I; p7: S4G, I12N, D48E; pro: E35D, L63P, V82I; rev: Q95R, V109I, T114A, K116G; tat: N12K, L68P; vif: Y30H, R34K, G60E, E61D, K67T, D78E, W89R, S95R, G101D, K122Q, I130F, D134E, N140K, I154L, R167S, K179R, R181K; vpr: I46V, A59V, I63L, R95G; vpu: -3S, -7V, V8A, I13V, L16F, I20L, L33W, K44E"}}}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000352", "node_attrs": {"div": 0.09478, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G12T", "T47A", "C365G", "C379A", "A571T", "A604C", "A606G", "G614T", "G629A", "G667T", "G690A", "C694A", "T695G", "A697C", "C698T", "A701G", "C767T", "G771C", "G791A", "A810G", "G815A", "C827T", "G836A", "A852T", "G956A", "G977A", "A1101G", "G1173A", "T1174C", "A1359T", "T1362A", "G1404A", "G1443A", "C1453-", "A1454-", "-1459C", "T1682C", "C1751A", "G1766A", "A1839G", "G1858A", "T1873C", "G1972A", "A2063C", "A2080T", "C2353T", "G2456T", "A2524G", "A2579T", "A2626C", "A2722G", "G2725A", "C2770T", "G2914A", "G2932T", "A2950G", "G2980A", "G3010A", "A3151G", "A3208T", "A3214G", "C3266T", "G3340A", "C3359T", "A3391T", "C3485A", "A3532G", "C3542T", "G3544T", "C3545A", "G3556A", "C3589T", "C3649T", "T3652C", "G3667A", "G3796A", "A3816G", "A3817G", "G3850C", "A3899C", "A4027G", "C4129T", "C4258T", "T4474C", "A4721C", "G4766A", "T4769G", "T4799G", "G4870A", "G4878A", 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["L8M", "K17R", "F39L", "R63K", "R93S", "G101D", "M109L", "Y111H", "K179R", "R181T", "R183H"], "vpr": ["Q8H", "I46V", "A89T"], "vpu": ["L2S", "-3P", "-5E", "-6I", "-7S", "A11G", "I18L", "Y27G", "Y30F", "R31K", "L33I", "V34L", "W41K", "I43V", "E62D", "S65A", "T66K", "M67L", "D70E", "R73D", "L74F", "R75D", "L76P", "L77W", "D78I", "V79G", "N80D", "D81N", "L82V"]}, "labels": {"aa": "INT: Q136R, K211Q, K269R, A278D; RT-p51: A36E, D39M, T48S, A173K, K249Q, V317A; RT-p66: A36E, D39M, T48S, A173K, K249Q, V317A, V466I; gp120: N1S, V2A, G3S, G4N, N5-, K18R, E19D, D74E, H77Q, V99I, -105N, A133M, L137I, Y145H, R150K, N159S, A172V, T174K, N202D, V267N, K307R, -308E, S318G, K319E, S365G, N369-, T371-, R404Q; gp41: R133K, K144R, G215E, L265S, R277N, E280T, L304Y, V321L, I325L, A342R; nef: A53P, A156T, Q188H; p17: H28R, I61M, R76K, G91E; p2: -7S; p24: L211I; p6: S51L; pro: S12A, K14R; rev: T91A, G98D; tat: K19D, D80N; vif: L8M, K17R, F39L, R63K, R93S, G101D, M109L, Y111H, K179R, R181T, R183H; vpr: Q8H, I46V, A89T; vpu: L2S, -3P, -5E, -6I, -7S, A11G, I18L, Y27G, Y30F, R31K, L33I, V34L, W41K, I43V, E62D, S65A, T66K, M67L, D70E, R73D, L74F, R75D, L76P, L77W, D78I, V79G, N80D, D81N, L82V", "clade": "CRF106_cpx"}}, "children": [{"name": "CRF106_cpx_NODE_0000001", "node_attrs": {"div": 0.12893, "clade_membership": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T495G", "T852A", "G1543A", "G2155A", "A2677G", "C2740T", "G4561A", "C4721A", "A4870G", "-6209A", "-6210A", "-6213T", "-6225A", "G6277A", "T6328G", "G6339C", "T6340G", "T6652C", "G6694A", "G6821A", "-6967A", "-6969A", "-6971A", "-6987A", "-6988T", "-6989A", "-6990A", "A7148G", "-7152A", "T7159A", "G7285A", "C8291T", "T8756C", "G8774A", "A8847C"], "RT-p51": ["M39T"], "RT-p66": ["M39T"], "gp120": ["S3T", "E323K", "-378N", "-379N", "-380T", "N432E", "N435T"], "gp41": ["L330C"], "p17": ["S54A"], "p24": ["S41T"], "p7": ["R26K"], "vif": ["D45E"]}, "labels": {"aa": "RT-p51: M39T; RT-p66: M39T; gp120: S3T, E323K, -378N, -379N, -380T, N432E, N435T; gp41: L330C; p17: S54A; p24: S41T; p7: R26K; vif: D45E"}}, "children": [{"name": "MT277001", "node_attrs": {"div": 0.16221999999999998, "accession": "MT277001", "clade_membership": {"value": "CRF106_cpx"}, "country": {"value": "CN"}, "date": {"value": 2015.0}, "Strain_name": {"value": "YN15099"}, "LANL_subtype": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C417A", "G418A", "C419A", "T424G", "T435C", "G452A", "C575T", "A576G", "A660C", "C688A", "A694G", "C773T", "G822T", "A860G", "G906A", "G908A", "T1143C", "T1182C", "C1229T", "A1241G", "A1307G", "C1448T", "A1450G", "-1458A", "G1472A", "G1477A", "T1502G", "A1525G", "G1622A", "T1653G", "A1657T", "G1673A", "C1756A", "A1770C", "A1781G", "T1828G", "T1831C", "G1832A", "G1839A", "G1852A", "A1858G", "T1868C", "A1908G", "A2023G", "C2083T", "T2086A", "G2287A", "T2302A", "A2400G", "G2413A", "T2456C", "T2499G", "G2602A", "A2611G", "T2708C", "G2761A", "A2920G", "G3044A", "A3127G", "G3250A", "T3328C", "T3331C", "T3343C", "G3344A", "T3349C", "C3380T", "A3443T", "T3551C", "C3554A", "A3802G", "G3869A", "G3896A", "A3931C", "G3952A", "A4051G", "A4112G", "G4268A", "C4396T", "A4433G", "C4576T", "G4597A", "A4692C", "C4701T", "C4759T", "G4859A", "A4877G", "C4890A", "G4986A", "A4993C", "A5082G", "G5140A", "A5155G", "G5167A", "C5180A", "A5236G", "C5268T", "T5280C", "G5293A", "C5306T", "A5335G", "G5336T", "G5357A", "A5360G", "C5415T", "A5432C", "T5433A", "A5447G", "T5451C", "C5469T", "T5479C", "G5493T", "C5578A", "T5599G", "C5612G", "A5613G", "C5614T", "G5619A", "A5621G", "A5626G", "G5627C", "A5655G", "T5688G", "A5729G", "A5737C", "A5746G", "G5747C", "C5756A", "A5757G", "C5834A", "T5844G", "T5870A", "G5902A", "T5923C", "T5932C", "G5954A", "A5955G", "G5956T", "A5957G", "C6023T", "T6024A", "A6030C", "A6060G", "A6149G", "A6152T", "A6159C", "-6175G", "G6179A", "-6186A", "C6190T", "A6194G", "-6195A", "T6196G", "-6198C", "T6199A", "-6201A", "-6202T", "-6204A", "-6205T", "G6207C", "A6208T", "-6211T", "A6214C", "-6215T", "-6216C", "-6217T", "-6218G", "-6220C", "A6222T", "-6224A", "A6232G", "A6235G", "A6262G", "A6273G", "A6275G", "A6276C", "C6286T", "C6287T", "G6303A", "A6326G", "A6327G", "A6332G", "C6339T", "G6346A", "A6376G", "G6391A", "G6442A", "A6449C", "A6505G", "C6563T", "G6628A", "T6641C", "G6647C", "A6648T", "A6654C", "T6655C", "A6659G", "G6743A", "A6773G", "A6778T", "A6800G", "G6818C", "C6819A", "C6833-", "T6835-", "A6849G", "A6850G", "T6857C", "T6860G", "C6888T", "A6889G", "C6904T", "G6935C", "G6947A", "T6953-", "A6954-", "C6955-", "A6956T", "T6957A", "G6962A", "-6972A", "-6973G", "-6986C", "-6991T", "-6992A", "-6993A", "-6994T", "-6995A", "-6996C", "-6997A", "-6998G", "-6999G", "-7000A", "-7001G", "-7002A", "-7003G", "-7004G", "-7005T", "-7006C", "A7016C", "G7026A", "A7106G", "A7107T", "A7154C", "T7156A", "A7158C", "-7162G", "C7170T", "G7232A", "T7243C", "A7245G", "G7268A", "G7271T", "A7275G", "A7463T", "A7594G", "T7622A", "C7625T", "A7626T", "A7627T", "A7632C", "G7677A", "A7701C", "G7702A", "A7705G", "T7774C", "G7915A", "A7997G", "A8032G", "C8033A", "A8055G", "C8092A", "A8093G", "T8094C", "C8097T", "G8099C", "A8128G", "C8129T", "G8163A", "T8169G", "C8183T", "A8207G", "G8208A", "T8209G", "T8213G", "A8214T", "T8215A", "G8216A", "A8258C", "A8266C", "G8267A", "C8276T", "T8323G", "A8327G", "G8328C", "T8333C", "G8348A", "C8351A", "G8354A", "A8402C", "A8409G", "A8458G", "C8471A", "C8485T", "C8488G", "T8492A", "A8493-", "C8494-", "C8495-", "A8496-", "A8497-", "T8498-", "C8499-", "C8500-", "T8501-", "G8502-", "A8503-", "T8504-", "T8511C", "G8512A", "A8564G", "G8590A", "C8651T", "G8660A", "G8666T", "C8688A", "A8701T", "G8739A", "T8759C", "A8808G", "C8809A", "C8810A", "T8843C", "A8844G", "C8847T", "G8864A", "C8906G", "T9130C"], "INT": ["V32I", "D41N", "I113V", "V165I", "I220V"], "RT-p51": ["K102R", "Y121H", "I135R", "A317T", "V417I"], "RT-p66": ["K102R", "Y121H", "I135R", "A317T", "V417I", "T450S", "Q487K"], "gp120": ["-5M", "L6-", "E34S", "T35A", "V57Y", "E59A", "K69R", "I99V", "T100S", "N102T", "-106V", "-107K", "-109N", "-111N", "-112A", "-114E", "-115T", "-116N", "-117N", "-118T", "-119N", "-120I", "-121S", "-122D", "-123I", "-124N", "I126M", "K140R", "K141A", "H145Y", "N158G", "N160D", "S162M", "K199Q", "N212H", "S263P", "E265L", "N267T", "T269A", "D297N", "R307G", "E308D", "R316G", "A322Q", "P326-", "N327-", "-328N", "K332R", "S335P", "S336A", "T345M", "G361R", "G365S", "-368N", "-373S", "-374T", "-375Y", "-376K", "-377H", "-381G", "-382E", "-383V", "I388L", "R391K", "K418V", "-433N", "N434Q", "T439I", "V460I", "K464R", "A473S", "K474R"], "gp41": ["M54L", "S107T", "Q108F", "E110A", "S125N", "K133T", "F206L", "L244I", "N251S", "F263L", "I264A", "S265L", "V266L", "R276C", "S287N", "V289G", "S302E", "Y304V", "D305N", "I319L", "L321F", "V322I", "L325F", "F340L", "R342A"], "nef": ["T23A", "K39R", "T48I", "A49G", "T51-", "N52-", "P53-", "D54-", "W57Q", "F81Y", "G83E", "E108D", "H116N", "Y120F", "V133I", "T156E", "M168V", "H188Q"], "p1": ["S8A", "H9L"], "p17": ["R28K", "M30R", "T81A", "N109H", "A118E", "E120-", "A121-"], "p2": ["N9S", "-12T"], "p24": ["A31S", "V59I"], "p6": ["P26Q", "K31Q", "L50W", "L51S"], "p7": ["S4N", "I12M", "K20R"], "pro": ["A12T", "R14K", "N37S"], "rev": ["K50R", "T62D", "H82S", "S84A", "T94V", "C107W", "S112F"], "tat": ["D19A", "N24S", "Q39H", "L68I"], "vif": ["R4K", "K36H", "L39F", "P58L", "N95S", "L102M", "D134N", "Q136P", "I166V", "G185E", "N190S"], "vpr": ["L26I", "T55I", "Q77R"], "vpu": ["S2W", "P3S", "E5L", "S7A", "K41R", "K44Q", "R47A", "A50E", "E70D", "P76H"]}, "labels": {"aa": "INT: V32I, D41N, I113V, V165I, I220V; RT-p51: K102R, Y121H, I135R, A317T, V417I; RT-p66: K102R, Y121H, I135R, A317T, V417I, T450S, Q487K; gp120: -5M, L6-, E34S, T35A, V57Y, E59A, K69R, I99V, T100S, N102T, -106V, -107K, -109N, -111N, -112A, -114E, -115T, -116N, -117N, -118T, -119N, -120I, -121S, -122D, -123I, -124N, I126M, K140R, K141A, H145Y, N158G, N160D, S162M, K199Q, N212H, S263P, E265L, N267T, T269A, D297N, R307G, E308D, R316G, A322Q, P326-, N327-, -328N, K332R, S335P, S336A, T345M, G361R, G365S, -368N, -373S, -374T, -375Y, -376K, -377H, -381G, -382E, -383V, I388L, R391K, K418V, -433N, N434Q, T439I, V460I, K464R, A473S, K474R; gp41: M54L, S107T, Q108F, E110A, S125N, K133T, F206L, L244I, N251S, F263L, I264A, S265L, V266L, R276C, S287N, V289G, S302E, Y304V, D305N, I319L, L321F, V322I, L325F, F340L, R342A; nef: T23A, K39R, T48I, A49G, T51-, N52-, P53-, D54-, W57Q, F81Y, G83E, E108D, H116N, Y120F, V133I, T156E, M168V, H188Q; p1: S8A, H9L; p17: R28K, M30R, T81A, N109H, A118E, E120-, A121-; p2: N9S, -12T; p24: A31S, V59I; p6: P26Q, K31Q, L50W, L51S; p7: S4N, I12M, K20R; pro: A12T, R14K, N37S; rev: K50R, T62D, H82S, S84A, T94V, C107W, S112F; tat: D19A, N24S, Q39H, L68I; vif: R4K, K36H, L39F, P58L, N95S, L102M, D134N, Q136P, I166V, G185E, N190S; vpr: L26I, T55I, Q77R; vpu: S2W, P3S, E5L, S7A, K41R, K44Q, R47A, A50E, E70D, P76H"}}}, {"name": "CRF106_cpx_NODE_0000002", "node_attrs": {"div": 0.13879, "clade_membership": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G518C", "C540A", "G554A", "C618A", "G743A", "C845T", "C950T", "C1459-", "C1460-", "G1664A", "A1700G", "G1709A", "C1721T", "A1769G", "T1987C", "A2230G", "A2599G", "G2926A", "G2951A", "C2968A", "A2977C", "A3162G", "T3496C", "A3502G", "A3619G", "G3686A", "T4129A", "T4153C", "T4706C", "G4799A", "C4844T", "A4845G", "A4860G", "G4864A", "A4869G", "C4967T", "C5125T", "A5355G", "A5453T", "C5547A", "T5611A", "T5653G", "T5654G", "T5688C", "T5695C", "C5713G", "C5727T", "T5817A", "T6024C", "T6172C", "-6201T", "-6202A", "-6205A", "-6211A", "-6224G", "T6244A", "A6268G", "T6325C", "G6330A", "A6450T", "A6535T", "C6612T", "C6613T", "A6668G", "A6669G", "-6834C", "A6849C", "-6973T", "-6974A", "-6975G", "-6976T", "-6977A", "-6978A", "-6979T", "-6980A", "-6983A", "-6984C", "-6986A", "-6991C", "-6992T", "-6993C", "-6994A", "T7039A", "G7088A", "C7089G", "G7160A", "-7162A", "A7163G", "C7164-", "A7246C", "C7630A", "G7790A", "G7921T", "C7951A", "A8006G", "T8008G", "A8069T", "A8080C", "C8202T", "A8273G", "G8349A", "G8350A", "A8364-", "G8365-", "T8366-", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "T8375-", "C8451T", "A8584T", "A8717G", "A8812G", "G8848A", "A8887T", "G8918A", "T8930C", "-8993T", "A9095G"], "RT-p51": ["A286T", "K356R"], "RT-p66": ["A286T", "K356R", "V531I"], "gp120": ["T110-", "S159D", "K199M", "A253V", "N272G", "K332T", "A412R", "E436T", "T437E", "K464N"], "gp41": ["D109E", "I235V", "S256C", "A300V", "R324G"], "nef": ["G3N", "S8-", "S9-", "I10-", "V11-", "C169H"], "p17": ["M61I", "Q69K"], "rev": ["A11E", "S54A", "Q74L", "I78L", "S84G"], "tat": ["Y26F", "S57R", "P81Q"], "vif": ["I87V", "R92G", "S93N", "N95G", "T180I"], "vpr": ["I84V"], "vpu": ["S2T", "L16G", "F30L", "Q36E"]}, "labels": {"aa": "RT-p51: A286T, K356R; RT-p66: A286T, K356R, V531I; gp120: T110-, S159D, K199M, A253V, N272G, K332T, A412R, E436T, T437E, K464N; gp41: D109E, I235V, S256C, A300V, R324G; nef: G3N, S8-, S9-, I10-, V11-, C169H; p17: M61I, Q69K; rev: A11E, S54A, Q74L, I78L, S84G; tat: Y26F, S57R, P81Q; vif: I87V, R92G, S93N, N95G, T180I; vpr: I84V; vpu: S2T, L16G, F30L, Q36E"}}, "children": [{"name": "MT624743", "node_attrs": {"div": 0.14734, "accession": "MT624743", "clade_membership": {"value": "CRF106_cpx"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14YN68"}, "LANL_subtype": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A379G", "T424G", "G491A", "A519G", "A520G", "C604A", "A607G", "T667C", "T978G", "G1002A", "-1452G", "-1453C", "-1454T", "A1476G", "G1954A", "T2353C", "A2686G", "G2787T", "A2790C", "A2838G", "C2840A", "G2842A", "T2845C", "G3091A", "G3816A", "T3970C", "A3988G", "C4288T", "C4534T", "A5134G", "C5182T", "A5248C", "C5250A", "A5284G", "T5319A", "C5412T", "A5495C", "G5619A", "G5620C", "A5962G", "A6019G", "G6029A", "T6171C", "A6173C", "-6175G", "T6178G", "T6181A", "C6184G", 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E48D, T49N, A59V, I60M, I63M, F72Y; vpu: E5Q"}}}, {"name": "CRF106_cpx_NODE_0000003", "node_attrs": {"div": 0.14079, "clade_membership": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T4694G", "A5057G", "G5293A", "T5579C", "C5678T", "A5839G", "A6180C", "T6199A", "A6203G", "A6210T", "T6213C", "A6329G", "G6336A", "C6488A", "A6684G", "A6716G", "G6725A", "-6982A", "-6985A", "-7164A", "A7782G", "A7818G", "G8292A", "G8330A", "C8331T", "G8945C", "-8973T", "-8975C", "-8977A", "-8979A", "G8991A"], "gp120": ["K277R", "T288A", "A291T", "T435K"], "gp41": ["K156N", "N160S", "K172R", "C330Y", "A343I"], "tat": ["L68P"], "vpu": ["T24I", "I78V"]}, "labels": {"aa": "gp120: K277R, T288A, A291T, T435K; gp41: K156N, N160S, K172R, C330Y, A343I; tat: L68P; vpu: T24I, I78V"}}, "children": [{"name": "MT277002", "node_attrs": {"div": 0.16479, "accession": "MT277002", "clade_membership": {"value": "CRF106_cpx"}, "country": {"value": "CN"}, "date": {"value": 2015.0}, "Strain_name": {"value": "YN15234"}, "LANL_subtype": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T131G", "A132G", "G139A", "C193A", "T201C", "A255C", "A278G", "A302T", "T306A", "T467C", "A499G", "A519C", "C583T", "A645G", "G650A", "C662G", "A666T", "T667G", "T974C", "T978A", "T979C", "A1093C", "C1115A", "C1118A", "C1229T", "T1443A", "-1452G", "-1453C", "-1454T", "A1495G", "G1562A", "A1568G", "G1622A", "A1642G", "A1644T", "C1658G", "G1713A", "C1714T", "A1715G", "A1766G", "A1819G", "G1861A", "A1907G", "A1920G", "A2007G", "C2075A", "T2456C", "C2720T", "G2925A", "C3129A", "G3151A", "T3253C", "G3385A", "A3491G", "A3775G", "G3952A", "T4258C", "T4282A", "T4412C", "G4673A", "C4690A", "A4725C", "G4726A", "A4740G", "C4771G", "A4819G", "C4873T", "T4919C", "T4969G", "C4988T", "A5033C", "A5096G", "C5162T", "C5197T", "A5233G", "A5236G", "T5280C", "A5312G", "T5356G", "C5412T", "C5461A", "T5479C", "A5576T", "A5586T", "T5599G", "T5636C", "A5714C", "G5739A", "G5808T", "C5862-", "C5863-", "-5865A", 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"K150R", "D157E", "N158G", "N160T", "S161K", "S162P", "R164N", "V180I", "N201K", "T269I", "I279V", "D297N", "Q300L", "K323E", "-328R", "K329-", "T332A", "S335A", "G365-", "T366-", "Y367-", "-376G", "-377I", "N378Y", "-381S", "-382N", "-383S", "-384S", "-385N", "E401K", "R412K", "K418R", "E432K", "-433K", "T436E", "I463V", "K472G"], "gp41": ["G3T", "I4L", "V7M", "I24M", "T25A", "Q52H", "Q108K", "E109A", "N129D", "K147Q", "S154K", "N156S", "N166H", "I210T", "D232S", "V235I", "L242F", "N251S", "C253W", "F263S", "L273I", "L294S", "V322I", "Q323R", "G324S", "L325F", "N331H"], "nef": ["D28V", "G83D", "Y120F"], "p1": ["K4R", "I5F", "H9Q"], "p17": ["E55G", "K62Q", "A83V", "I104V", "N109K", "I111C"], "p2": ["S7T", "-10A"], "p24": ["L83T", "N121T", "D128E"], "p6": ["A12M", "N47S"], "p7": ["K10R"], "pro": ["N37D", "K41R", "K70R", "L93I"], "rev": ["I21F", "Q24L", "A54S", "I55L", "S61C", "P72A", "R80G", "A91D", "S112F"], "tat": ["R29S", "N67I", "S75P"], "vif": ["M29I", "A35D", "R47Q", "S52G", "A62G", "D78G", "T96I", "I128R"], "vpr": ["I70V", "V84G"], "vpu": ["V10A", "E36A"]}, "labels": {"aa": "RT-p51: Y121H, R277K, D291E, P345Q; RT-p66: Y121H, R277K, D291E, P345Q, I466V; gp120: T3N, V57S, V73A, Q77H, I99V, N105D, N108-, N113-, S130T, M133V, E136D, I137L, R138W, Q142E, K143N, K150R, D157E, N158G, N160T, S161K, S162P, R164N, V180I, N201K, T269I, I279V, D297N, Q300L, K323E, -328R, K329-, T332A, S335A, G365-, T366-, Y367-, -376G, -377I, N378Y, -381S, -382N, -383S, -384S, -385N, E401K, R412K, K418R, E432K, -433K, T436E, I463V, K472G; gp41: G3T, I4L, V7M, I24M, T25A, Q52H, Q108K, E109A, N129D, K147Q, S154K, N156S, N166H, I210T, D232S, V235I, L242F, N251S, C253W, F263S, L273I, L294S, V322I, Q323R, G324S, L325F, N331H; nef: D28V, G83D, Y120F; p1: K4R, I5F, H9Q; p17: E55G, K62Q, A83V, I104V, N109K, I111C; p2: S7T, -10A; p24: L83T, N121T, D128E; p6: A12M, N47S; p7: K10R; pro: N37D, K41R, K70R, L93I; rev: I21F, Q24L, A54S, I55L, S61C, P72A, R80G, A91D, S112F; tat: R29S, N67I, S75P; vif: M29I, A35D, R47Q, S52G, A62G, D78G, T96I, I128R; vpr: I70V, V84G; vpu: V10A, E36A"}}}, {"name": "MT276998", "node_attrs": {"div": 0.16015, "accession": "MT276998", "clade_membership": {"value": "CRF106_cpx"}, "country": {"value": "CN"}, "date": {"value": 2017.0}, "Strain_name": {"value": "17YNS377"}, "LANL_subtype": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G395A", "C426A", "A497T", "G542T", "A548G", "T571A", "G608A", "G619A", "A647G", "G821A", "A852T", "A968G", "C1060A", "A1089G", "C1118T", "A1268G", "A1404G", "T1443G", "-1458A", "-1459C", "-1460T", "G1503A", "C2135T", "A2272G", "G2287A", "A2641G", "G2677A", "A2695C", "A2726C", "T2779G", "A2818G", "C2941T", "A2968T", "C2978T", "A3019G", "C3100T", "A3109T", "G3162A", "A3224C", "G3226A", "G3619A", "G3684A", "C3850T", "T4075C", "C4146G", "G4268A", "A4410T", "C4730T", "T4840C", "G4859A", "C5128A", "A5210G", "G5279A", "A5305G", "C5351T", "G5355A", "T5451C", "A5471T", "A5555C", "C5559T", "T5657G", "T5679C", 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L249I, G296D, Q300R, R307G, A322L, T330S, G361S, -368I, -369N, -370G, -371T, -372Y, -373M, -374T, -375N, -376I, -377T, N378D, N379T, T387I, N414E, T416R, K418E, E432D, -433E, T439I; gp41: L33V, M54L, A96N, E109K, R122K, I124V, K133R, D163N, T165S, N166S, D217N, D232N, N239S, E272Q, R342A; nef: I16V, I20M, T51N, L76*, Y135D, R151S, T156S, H188L, E201D; p17: L31I, K69N, F79Y, R95K, I104M; p2: S7A, -12T; p24: T41S, T110N, S120G, S225G; p7: V13I; rev: A15V, R35K, H53R, A68T, G90A, A91T, S103P; tat: Y32F, Q60P; vif: V85A, T181K; vpr: H8Q, R36G, A59I, V84M; vpu: I17S, I33L, L34Q"}}}]}]}]}, {"name": "CRF106_cpx_NODE_0000004", "node_attrs": {"div": 0.12781, "clade_membership": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C749A", "A815G", "A989G", "G1002A", "-1458G", "A1495G", "T1613C", "C1679T", "A1894G", "A1966G", "T2077G", "A2174T", "C2211T", "A2212G", "A2473G", "T2494C", "G2578A", "A2713G", "T2719C", "T2944A", "C3129A", "G4244C", "A4253C", "T4655C", "T5147C", "T5599A", 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G89V; tat: Q60P; vif: Y30H, I87V, L91W, T181R, H183R; vpr: H8Q, I60M, I63L, I84M; vpu: K44E"}}, "children": [{"name": "MT624745", "node_attrs": {"div": 0.16197, "accession": "MT624745", "clade_membership": {"value": "CRF106_cpx"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14YN252"}, "LANL_subtype": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T396C", "C482T", "C537A", "C604A", "A647G", "A833G", "G1090A", "G1313A", "A1412G", "G1498A", "C1535T", "C1598T", "T1652C", "C1753T", "T1754A", "A1760G", "G1777A", "A1819G", "G1839A", "A1846G", "G1852A", "A2152C", "A2344G", "T2863C", "A2905T", "T2908C", "T2911A", "C3032A", "T3132A", "G3169A", "A3280G", "G3379A", "G3398A", "C3399T", "A3454G", "A3460G", "C3475T", "G3484A", "T3499C", "A3523G", "T3541C", "C3592A", "C3652T", "A3802G", "G3816A", "G3825A", "C3850T", "T3889C", "C3899A", "G3907A", "C3908T", "A3913G", "G3916A", "T3922C", "C4079T", "T4129G", "G4156A", "T4165C", "G4182A", "G4268A", 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"labels": {"aa": "INT: R14K, S17N, Q42K, R136Q, V165I, V249I; RT-p51: P313T, F346Y, A435I; RT-p66: P313T, F346Y, A435I; gp120: T22A, E34D, Q54L, I56V, L58M, E74D, I99V, N102E, T104R, N105D, T107R, -111G, -112R, -114I, -115P, -116T, -117I, -118R, -119L, -121M, -122G, V126M, M133I, E136V, I137V, K140R, K141N, Q142K, H145D, A196V, A253V, N267T, T269A, R307E, K312R, R316K, G318S, N349T, -381E, -382H, -383N, N432K, E436K, R448K, E481D; gp41: V2A, G3L, I4-, S23A, I24V, D113Q, T130I, Q133E, E137T, R144I, S154N, N160S, T165S, M176I, D230G, A245I, N277S, Q323L, L330Y, F340L, A343T; nef: E155K, N156S, M173V, E174D, R178G; p17: L68I, A90E, I104M, I111N; p24: S120N; p6: A25V, R33K, N47S; p7: R11K; pro: R14K; rev: C63Y, S84T, *101Q, A114T; tat: R29L, L68P; vif: K36N, D101N, Q136R, R179K, H192Q; vpr: L20I; vpu: V21I"}}}, {"name": "MT624744", "node_attrs": {"div": 0.15996, "accession": "MT624744", "clade_membership": {"value": "CRF106_cpx"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, 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"E136A", "E137D", "N140L", "R144K", "K156N", "H258R", "N277R", "T280E", "Y304L", "E320N", "L321I", "R324G", "L325I", "L330R", "I332V", "R342A"], "nef": ["A15D", "T23A", "E24G", "K39R", "E63D", "T80D", "F81Y", "F85L", "Y135F", "L137I", "S169G", "H188L", "R191H", "Q192H"], "p17": ["R43K", "S54A", "M61I", "Q65H", "Q69K", "F79Y", "I111Y", "A121T", "Q130H"], "p24": ["P14S", "N121T", "L136M"], "p6": ["S3N", "P24L", "K31R"], "p7": ["S4N", "R11G", "R26K", "T50I"], "pro": ["A12T"], "rev": ["A15T", "K20R", "I21L", "I55L", "A91T", "D98G", "*101E"], "tat": ["V4I", "D19N", "S61N", "N67T"], "vif": ["V31I", "I66V", "P156L", "I166V", "T180I", "N186S"], "vpr": ["R36G", "P37Q", "I59V", "S94N"], "vpu": ["E5Q", "F30V", "R47I"]}, "labels": {"aa": "INT: M50I; RT-p51: Y121H, Q249K, A437V; RT-p66: Y121H, Q249K, A437V, I466V; gp120: V57L, E59G, Q86E, N109M, -111R, -112A, -114T, -115T, -116G, -117A, -118N, -119R, -121V, -122E, -124Y, I137L, V154I, D157N, S161F, K203N, N212Q, T216I, E240G, I243M, I279V, K309I, Q324K, T344I, N364K, T366K, -368I, -369N, -370G, -371T, -372Y, -373M, -374Y, -378N, -379D, -380T, -381T, -382T, -383S, D384N, V427L, N432D, E436T, E481K; gp41: G13S, S107T, Q108Y, D109G, N129D, E136A, E137D, N140L, R144K, K156N, H258R, N277R, T280E, Y304L, E320N, L321I, R324G, L325I, L330R, I332V, R342A; nef: A15D, T23A, E24G, K39R, E63D, T80D, F81Y, F85L, Y135F, L137I, S169G, H188L, R191H, Q192H; p17: R43K, S54A, M61I, Q65H, Q69K, F79Y, I111Y, A121T, Q130H; p24: P14S, N121T, L136M; p6: S3N, P24L, K31R; p7: S4N, R11G, R26K, T50I; pro: A12T; rev: A15T, K20R, I21L, I55L, A91T, D98G, *101E; tat: V4I, D19N, S61N, N67T; vif: V31I, I66V, P156L, I166V, T180I, N186S; vpr: R36G, P37Q, I59V, S94N; vpu: E5Q, F30V, R47I"}}}]}, {"name": "CRF106_cpx_NODE_0000006", "node_attrs": {"div": 0.13527, "clade_membership": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A512G", "G534T", "C604A", "T902C", "T917C", "A1088G", "A1476G", "T1653C", "G1687A", "C1795T", "A1867T", "G1942A", "A2191G", "A2344G", "A2414T", "A2557G", "G2926A", "T3343C", "C3376T", "G3463A", "A3503G", "G3532A", "G3631A", "A3674C", "T3799C", "C3850T", "T3856C", "A3982G", "C4123T", "A4315T", "A4333G", "G4335A", "A4338G", "C4529A", "A4658G", "T4694G", "A4869G", "T5224C", "A5312G", "T5314C", "A5364C", "A5467T", "T5483C", "T6024A", "-6186A", "A6197-", "-6218A", "-6224G", "A6848C", "C6875A", "G6936A", "-7007A", "-7008C", "-7009C", "G7055A", "C7089A", "A7095T", "T7138G", "-7152G", "T7156A", "C7170T", "A7426G", "T7604G", "C7625A", "C7630A", "A7796T", "C8062G", "G8292T", "C8293T"], "INT": ["R187K", "K188R", "Q252K"], "RT-p51": ["T107S"], "RT-p66": ["T107S", "T470A", "K527Q"], "gp120": ["V57H", "-111N", "N160T", "N212H", "D294E", "S306N", "K332Q", "L341I", "G361N", "E401K", "A412E", "-433S", "T439I"], "gp41": ["S101A", "Q108R", "D109E", "T165S", "N239S", "N251R", "L254I", "A343T"], "p17": ["A67S", "A90E"], "p2": ["-10A"], "p6": ["S3N", "T39I"], "p7": ["S4G"], "rev": ["P70A", "P72D", "S84G"], "vif": ["L39I", "N95D"], "vpr": ["T49N", "I70V"]}, "labels": {"aa": "INT: R187K, K188R, Q252K; RT-p51: T107S; RT-p66: T107S, T470A, K527Q; gp120: V57H, -111N, N160T, N212H, D294E, S306N, K332Q, L341I, G361N, E401K, A412E, -433S, T439I; gp41: S101A, Q108R, D109E, T165S, N239S, N251R, L254I, A343T; p17: A67S, A90E; p2: -10A; p6: S3N, T39I; p7: S4G; rev: P70A, P72D, S84G; vif: L39I, N95D; vpr: T49N, I70V"}}, "children": [{"name": "MT624746", "node_attrs": {"div": 0.14646, "accession": "MT624746", "clade_membership": {"value": "CRF106_cpx"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14YN526"}, "LANL_subtype": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T1182C", "A1307G", "C1535T", "C1653G", "T1722C", "A1771G", "G3226A", "A3619G", "T4177C", "G4636A", "C4701A", "C4754T", "C4967T", "G4981A", "C4988T", "C5250A", "G5279A", "G5357A", "C5412T", "A5432C", "C5461A", "C5547A", "G5556A", "A5699G", "A5702G", "T5731C", "G5734A", "C5756A", "C5826T", 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G318R, N361D, T366K, -368I, -369N, -370G, -371T, -372Y, -373N, P389Q, Q404L, N414I, K418N, N420S, N434T, N435E, T437N, G445R; gp41: I4L, L9F, S42N, M54L, I72L, G83E, N160S, M176I, C253W, A300V; nef: E24D, F81Y, F85L, T156N, C169S, M194T; p1: S8A; p6: F15L, K31R; rev: A11E, R14K, K50R, H53N, T62A, S92P, *101Q; tat: D19A, R29S, S31C, V36A, S57R; vif: R17K, R132K; vpr: I63M; vpu: K31R, K32R, V43I, A50E, F74L, V82M"}}}, {"name": "CRF106_cpx_NODE_0000007", "node_attrs": {"div": 0.14103, "clade_membership": {"value": "CRF106_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A527G", "G1090A", "G1313T", "G1498A", "G1562A", "C1646A", "G1720A", "T1910C", "A2108G", "G2305A", "T2527C", "A2569G", "C2584T", "C2749T", "A2767G", "T2779G", "G2788A", "A3144G", "A3192G", "G3344A", "C3399T", "G3772A", "G3817A", "T3898C", "T4165C", "G4268A", "C4381T", "T4543C", "A5655C", "G5824A", "G5965A", "T6171C", "-6209C", "A6251G", "A6311C", "A6329G", "G6339C", "T6340G", "T6652C", "T6735A", "G6821A", "G6935A", "T6957G", 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R334T, A342V; nef: I20M, D54A, F81Y, F85L, F89H, V146E, H191Y, R194W; p17: F79Y, I104M, Q112-, Q113-, K114-, T115-, E120A, A121D; p2: -10A; p24: P14A, M68I; p6: S14N, K42R; pro: K70R, L89M; rev: P67S, A68T, I78L, H82T, I83L, S84D, D85C, E87K, S88D, G89C, *101Q, S103L, G104V, K105E, C107P, A108E, V109I, A114T, K116E, E117*; tat: N12K, R53K, P75S; vif: N36K, I87V, G101D, M109L, D117E, I159R, I166V, N176K; vpr: P4A; vpu: -3N, -7L, I8L, -9G", "clade": "CRF88_BC"}}, "children": [{"name": "KF250402", "node_attrs": {"div": 0.14812999999999998, "accession": "KF250402", "clade_membership": {"value": "CRF88_BC"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "DH19"}, "LANL_subtype": {"value": "CRF88_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C435T", "A492G", "G495C", "A518G", "T571A", "C572T", "G644A", "C684G", "G818A", "C947A", "T978G", "A1002C", "T1003C", "A1034T", "G1077A", "G1088A", "T1295C", "C1385T", "A1476G", "A1664G", "G1697A", "A1715G", "A1720G", 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"A6781C", "G6788A", "A6819G", "A6850G", "C6855A", "A6856G", "A6935G", "T6949G", "T6953-", "A6954-", "C6955-", "C6956T", "-6971A", "-6972G", "-6973A", "-6974A", "-6975C", "-6977G", "-6978C", "-6979A", "-6996A", "-6998G", "A6999G", "T7001A", "-7004G", "T7011G", "A7147C", "A7149C", "C7150A", "A7151G", "A7153G", "G7182C", "G7252A", "A7269G", "C7486T", "G7495A", "A7533G", "T7585C", "C7625G", "G7633A", "G7640C", "A7782G", "G7801A", "G7831A", "T7853C", "A7947G", "C8038A", "A8050G", "A8208G", "C8215T", "A8216G", "G8243T", "A8338G", "T8558C", "A8746T", "C8775T", "C8809A", "C8813T", "G8864T", "A8882G", "A8887G", "G8888A", "T8935G", "T8988C", "C9075T"], "RT-p51": ["K104R", "E207D", "H315Q"], "RT-p66": ["K104R", "E207D", "H315Q"], "gp120": ["Q54H", "V57D", "E59V", "E102N", "-107T", "N108Y", "N111S", "S112T", "-115T", "-116S", "K141T", "S143P", "L156I", "-157N", "N158S", "N159S", "S160K", "S161E", "I197L", "N201K", "S212P", "A253V", "Q262E", "E265K", "I266F", "T269I", "N272G", "E307N", "K322G", "A334E", "S365R", "Y367-", "L368F", "-370S", "-382G", "-384D", "-385T", "I386S", "T433D", "N434T", "E436D", "G443A", "E472G"], "gp41": ["K77R", "Q108E", "E113Q", "R133S", "N160S", "K166Q", "M176I", "K231R", "D302G", "G314W", "F340L"], "nef": ["Y81F", "Y135F", "A156D", "E174D", "K182R", "L198R"], "p17": ["T53A", "A54P", "I61M"], "p2": ["-7T"], "p24": ["L83V", "V91P", "A116T"], "p6": ["N14S", "K31R"], "p7": ["S4G"], "rev": ["D7N", "L64M", "T68A"], "tat": ["Y26F"], "vif": ["R33K", "D45E", "V65I", "N95S", "M181K", "R183H"], "vpr": ["H8Q", "T19A"], "vpu": ["-5G", "-6I", "L8G", "G9I", "V10G", "V26A", "R31K", "R73N"]}, "labels": {"aa": "RT-p51: K104R, E207D, H315Q; RT-p66: K104R, E207D, H315Q; gp120: Q54H, V57D, E59V, E102N, -107T, N108Y, N111S, S112T, -115T, -116S, K141T, S143P, L156I, -157N, N158S, N159S, S160K, S161E, I197L, N201K, S212P, A253V, Q262E, E265K, I266F, T269I, N272G, E307N, K322G, A334E, S365R, Y367-, L368F, -370S, -382G, -384D, -385T, I386S, T433D, N434T, E436D, G443A, E472G; gp41: K77R, Q108E, E113Q, R133S, N160S, K166Q, M176I, K231R, D302G, G314W, F340L; nef: Y81F, Y135F, A156D, E174D, K182R, L198R; p17: T53A, A54P, I61M; p2: -7T; p24: L83V, V91P, A116T; p6: N14S, K31R; p7: S4G; rev: D7N, L64M, T68A; tat: Y26F; vif: R33K, D45E, V65I, N95S, M181K, R183H; vpr: H8Q, T19A; vpu: -5G, -6I, L8G, G9I, V10G, V26A, R31K, R73N"}}}, {"name": "CRF88_BC_NODE_0000001", "node_attrs": {"div": 0.13004, "clade_membership": {"value": "CRF88_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A1464C", "A1709T", "A2419C", "T5617A", "T5624G", "T5859G", "C6189G", "C6278A", "T8584A"], "gp120": ["V2G", "Q142K", "G361S"], "gp41": ["G215E", "D305N"], "p2": ["M14L"], "p6": ["N47S"], "tat": ["D80N"]}, "labels": {"aa": "gp120: V2G, Q142K, G361S; gp41: G215E, D305N; p2: M14L; p6: N47S; tat: D80N"}}, "children": [{"name": "KC898975", "node_attrs": {"div": 0.14776, "accession": "KC898975", "clade_membership": {"value": "CRF88_BC"}, "country": {"value": "CN"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05YNRL07sg"}, "LANL_subtype": {"value": "CRF88_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G495T", "A515C", "C525T", "C590T", "C635T", "A656G", "C684G", "G755A", "T788G", "C845T", "T1003A", "C1060G", "G1184A", "G1313A", "A1340G", "C1409T", "A1543G", "C1598T", "A1616G", "A1689C", "C1768T", "T1832C", "C2107T", "A2237T", "A2400G", "G2401A", "T2499G", "G2518A", "A2592G", "G2611A", "C2694T", "G2833A", "A2937G", "A3193G", "A3230G", "A3703G", "G3816A", "A3931G", "C4021T", "G4027A", "A4246C", "A4254G", "G4264A", "A4402G", "T4694G", "G4774A", "G4845A", "G4864A", "G4870A", "G4887A", "G4932A", "G5062T", "T5275C", "C5333T", "A5362C", "T5611A", "A5615C", "G5620-", "A5623-", "G5636C", "A5664C", "A5825G", "G5861-", "G5862-", "A5863-", "G5865T", "A5866T", "A5867T", "A5868C", "A5958G", "A5959C", "T6024C", "G6029A", "A6030G", "T6109G", "A6113G", "G6133A", "C6160A", "T6169G", "C6175A", "A6180G", "T6181G", "T6193G", "A6194G", "G6201A", "-6203A", "-6204A", "-6205G", "-6206A", 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"C8747T", "G8933A", "C9053A"], "INT": ["R14K", "M84I", "E157D", "K160R"], "RT-p51": ["T48S", "K102R", "I135R", "K166R", "A200V", "K281R", "S379G"], "RT-p66": ["T48S", "K102R", "I135R", "K166R", "A200V", "K281R", "S379G"], "gp120": ["G3V", "G4S", "N5-", "K35S", "V57A", "E59R", "D85E", "S87G", "N105K", "-107R", "N109G", "N113-", "-123K", "-124G", "R138T", "Y145C", "I153V", "-157E", "N158K", "S162K", "D183E", "K203E", "E240K", "S263P", "Q300E", "Q315H", "K332E", "S336N", "I343V", "N369L", "-370N", "T371-", "-382N", "I383L", "-384S", "-385P", "R418K", "E436T", "G443E"], "gp41": ["G3P", "I4L", "V7M", "I24M", "T25A", "S107T", "D109T", "N126D", "N129D", "E137N", "R144K", "D148G", "K166R", "I187V", "G220R", "N232A", "A268V", "I270T"], "nef": ["A15N"], "p17": ["A54S", "Y79F"], "p2": ["-7T"], "p24": ["V91N", "T110S"], "p6": ["P30L"], "p7": ["K26R"], "pro": ["S12P"], "rev": ["Q14R", "R38Q", "K50S", "I59V", "S67P", "K87Q"], "tat": ["K53R"], "vif": ["R63K", "V87I", "R93K", "D101N", "A116T", "R159I"], "vpr": ["Q86P"], "vpu": ["L2I"]}, "labels": {"aa": "INT: R14K, M84I, E157D, K160R; RT-p51: T48S, K102R, I135R, K166R, A200V, K281R, S379G; RT-p66: T48S, K102R, I135R, K166R, A200V, K281R, S379G; gp120: G3V, G4S, N5-, K35S, V57A, E59R, D85E, S87G, N105K, -107R, N109G, N113-, -123K, -124G, R138T, Y145C, I153V, -157E, N158K, S162K, D183E, K203E, E240K, S263P, Q300E, Q315H, K332E, S336N, I343V, N369L, -370N, T371-, -382N, I383L, -384S, -385P, R418K, E436T, G443E; gp41: G3P, I4L, V7M, I24M, T25A, S107T, D109T, N126D, N129D, E137N, R144K, D148G, K166R, I187V, G220R, N232A, A268V, I270T; nef: A15N; p17: A54S, Y79F; p2: -7T; p24: V91N, T110S; p6: P30L; p7: K26R; pro: S12P; rev: Q14R, R38Q, K50S, I59V, S67P, K87Q; tat: K53R; vif: R63K, V87I, R93K, D101N, A116T, R159I; vpr: Q86P; vpu: L2I"}}}, {"name": "KC898979", "node_attrs": {"div": 0.14794, "accession": "KC898979", "clade_membership": {"value": "CRF88_BC"}, "country": {"value": "CN"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05YNRL25sg"}, "LANL_subtype": {"value": "CRF88_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A500T", "A509G", "A520G", "A530T", "T571A", "T614G", "G647A", "C669A", "-672C", "-673A", "-674G", "-675G", "-676C", "-677A", "-679C", "-680A", "C681A", "G683A", "C685A", "A689G", "G690T", "A691C", "G692A", "T695A", "A697G", "-699A", "-700A", "G701A", "G702A", "-705G", "-706G", "-707C", "-708T", "-709G", "-710C", "-711G", "-712G", "-713G", "-714A", "T824C", "T1103C", "G1157A", "T1296C", "C1439T", "A1450G", "A1568G", "A1619G", "T1679C", "A1772G", "A1951G", "G2002A", "A2029G", "T2062C", "C2281T", "G2470A", "T2521C", "G2548A", "G2612A", "A2626G", "C2632T", "T2638C", "T2770A", "C2806T", "C3045T", "C3121T", "T3197C", "G3221T", "A3293G", "A3316G", "G3479C", "A3487G", "A3535C", "T3943C", "A4243G", "A4459G", "C4585T", "G4677A", "A4688G", "T4703G", "G4708A", "G5082A", "C5251T", "G5296A", "G5431A", "T5454C", "C5472T", "T5483C", "G5534A", "A5535G", "G5548A", "G5556A", "T5568C", "T5579C", 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N140H, K156N, D163S, I193L, K231R, N239S, H259R, A310V, V318I, V321I, F340L, V342L; nef: K39R, D53E, L85V, R151S, N157S, V168A, C169W, Q188H, Y191F, R192K; p17: E55D, K62R, Q65H, D93E, M104I, -112K, -113Q, -114A, -126G, -127K; p2: N8T, A10S, -11A; p24: V91I; rev: D7S, I18T, I55L; tat: E19K, V36A, A58T, L68P; vif: V31I, K36N, F39L, R41K, N95S, V166I; vpu: L7R, A19V, R73H"}}}]}]}, {"name": "results/subtype_trees/CRF64_BC.nwk", "node_attrs": {"div": 0.12073, "clade_membership": {"value": "CRF64_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G265A", "C604A", "T614C", "A653G", "-700C", "A752G", "A1089G", "T1182C", "A1437G", "A1443G", "A1476G", "A1486G", "A1487G", "G1488A", "G1489A", "C1492A", "T1493A", "A1495G", "G1498A", "A1499G", "T1505C", "A1508G", "G1526A", "C1610T", "A1619G", "A1643G", "-1729T", "-1730T", "-1731G", "-1732G", "-1733G", "-1734G", "T1735A", "C1736A", "G1740A", "A1741C", "G1742A", "C1748T", "G1752T", "C1756A", "A1762C", "A1771T", "G1777A", "-1785T", "-1786A", "C1790T", 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["-18G", "-19E", "E21T", "A25S", "P26Q", "Q28P", "K31I", "R33K", "-36Y", "T39A"], "p7": ["S4G", "K7R", "G8N", "P9Q", "K10R", "R11K"], "pro": ["K69H"], "tat": ["L68P"], "vif": ["D45E", "V51I"], "vpu": ["-3D", "-5D", "-6Y", "V34K"]}, "labels": {"aa": "INT: Q136K, K211R; gp120: I56M, E136V, L137V, N158E, N159K, K307R, S365G, A412E; gp41: K122R, E137D, R277N, V322I; p1: I5L; p17: A90K; p2: S5G, -7A; p24: S120G; p6: -18G, -19E, E21T, A25S, P26Q, Q28P, K31I, R33K, -36Y, T39A; p7: S4G, K7R, G8N, P9Q, K10R, R11K; pro: K69H; tat: L68P; vif: D45E, V51I; vpu: -3D, -5D, -6Y, V34K", "clade": "CRF64_BC"}}, "children": [{"name": "CRF64_BC_NODE_0000001", "node_attrs": {"div": 0.12355000000000001, "clade_membership": {"value": "CRF64_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G1139A", "-1787C", "A2592G", "G2951A", "A4174G", "C4381T", "A4766G", "C5514A", "G5556A", "G6023T", "A6182-", "C6183-", "T6184-", "A6185-", "-6195A", "-6197G", "-6198G", "-6199G", "-6201G", "-6202C", "-6206A", "A6273G", "G6601A", "C6612T", "T6641C", "A6836G", "A6837G", "-6956A", "T7150A", "A7620G", "A7627G", "T7642G", "A8119G", "G8794A", "G8864T"], "RT-p51": ["K166R", "A286T"], "RT-p66": ["K166R", "A286T"], "gp120": ["V57F", "-106V", "K140R", "A253V", "S263P", "N327G"], "gp41": ["K106R"], "nef": ["E174D"], "rev": ["T91A"], "vpu": ["-7R"]}, "labels": {"aa": "RT-p51: K166R, A286T; RT-p66: K166R, A286T; gp120: V57F, -106V, K140R, A253V, S263P, N327G; gp41: K106R; nef: E174D; rev: T91A; vpu: -7R"}}, "children": [{"name": "KC898994", "node_attrs": {"div": 0.1521, "accession": "KC898994", "clade_membership": {"value": "CRF64_BC"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09YNLX047sg"}, "LANL_subtype": {"value": "CRF64_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "A389G", "T396C", "T419A", "T424G", "G481A", "C482G", "G495A", "A520G", "G554A", "C575T", "A581G", "T587A", "G603A", "A643C", "T667G", "A691C", "A694G", "T749G", "T767C", "T983C", "G1089A", "G1205A", 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"E265K", "R280G", "A291T", "T292G", "D294I", "R307E", "-308K", "-309D", "R316G", "K319R", "A322G", "E323K", "T330A", "K332E", "P335S", "-368N", "-370S", "-372N", "R428Y", "N432R", "N434E", "E436T", "E472G"], "gp41": ["S107T", "D109K", "E110Q", "D113E", "N129D", "T130I", "R144K", "K156E", "N166K", "V194M", "G214R", "R259Q", "D262N", "S287G", "I301V", "T306A", "I322V", "A325G", "C326F"], "nef": ["G3N", "V33A", "K39R", "A49P", "D53E", "D54A", "E98D", "Y135F", "R151E", "E155A", "E176D", "H177C", "S187N", "H191R"], "p17": ["K18R", "H28Q", "M30R", "G49E", "A54T", "K62R", "K103T", "I111S", "K119-", "E120-", "A121-"], "p2": ["G5N", "N8S", "-12T"], "p24": ["G120S"], "p6": ["S3N", "A12E", "I31R", "L38S", "A39V"], "p7": ["Q9K", "K26R", "K33E"], "pro": ["V15I", "I19T", "I36M", "N37S", "K41R"], "rev": ["S8N", "R32K", "T62S", "L64M", "R80K", "S84G", "K105R"], "tat": ["E19V", "Q39H", "A58T", "I69V"], "vif": ["R63K", "K67T", "K122R"], "vpu": ["L4I", "I8L", "-9G", "V26A"]}, "labels": {"aa": "INT: D6E, E10D, R14K, V112T, T122I, I162V, K269R; RT-p51: K11T, I202V, K211R, S251I, K311R, V317A, I326V, V437A; RT-p66: K11T, I202V, K211R, S251I, K311R, V317A, I326V, V437A, K464R; gp120: K21E, E34G, N64D, D71G, T104A, -107Y, N109V, -111A, N113-, -123K, -124G, Y145F, -157N, T204E, N212S, E240K, R245S, L249V, V253I, Q262K, E265K, R280G, A291T, T292G, D294I, R307E, -308K, -309D, R316G, K319R, A322G, E323K, T330A, K332E, P335S, -368N, -370S, -372N, R428Y, N432R, N434E, E436T, E472G; gp41: S107T, D109K, E110Q, D113E, N129D, T130I, R144K, K156E, N166K, V194M, G214R, R259Q, D262N, S287G, I301V, T306A, I322V, A325G, C326F; nef: G3N, V33A, K39R, A49P, D53E, D54A, E98D, Y135F, R151E, E155A, E176D, H177C, S187N, H191R; p17: K18R, H28Q, M30R, G49E, A54T, K62R, K103T, I111S, K119-, E120-, A121-; p2: G5N, N8S, -12T; p24: G120S; p6: S3N, A12E, I31R, L38S, A39V; p7: Q9K, K26R, K33E; pro: V15I, I19T, I36M, N37S, K41R; rev: S8N, R32K, T62S, L64M, R80K, S84G, K105R; tat: E19V, Q39H, A58T, I69V; vif: R63K, K67T, K122R; vpu: L4I, I8L, -9G, V26A"}}}, {"name": "KC899009", "node_attrs": {"div": 0.15016000000000002, "accession": "KC899009", "clade_membership": {"value": "CRF64_BC"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09YNLX219037sg"}, "LANL_subtype": {"value": "CRF64_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A398G", "C540A", "G562A", "A599G", "G603C", "C614A", "G653A", "A666T", "A678G", "C679T", "G687A", "C688A", "C697A", "G717A", "T718C", "C773T", "A866G", "A1092G", "A1093C", "C1095A", "T1103G", "C1175T", "C1182T", "C1230A", "G1313A", "G1421A", "A1442C", "A1450G", "G1487A", "A1494G", "G1508A", "T1513C", "T1517C", "A1528C", "A1567G", "A1620G", "A1664G", "A1700G", "A1746G", "C1761A", "A1770G", "-1782C", "-1783T", "-1784A", "T1832A", "G1839A", "T1975C", "C1985A", "T2013C", "G2042A", "C2075A", "C2098T", "A2122C", "C2149A", "A2397G", "A2400G", "C2464T", "C2605T", "A2692G", "C2737T", "T2770C", "A2962G", "G2972A", "C3067A", "G3094A", "C3095A", "A3096G", 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{"aa": "INT: G134D; gp120: Y33H, N109G, -112T, I126-, R150K, E247K, -370G, I439V, E472A; gp41: T67A, S107N, D109T, F206L, T208I, L209P, N232S, L242F, E280R; pro: I36V; rev: E30K, K50E, S61R, L73F, G98E; tat: P73S, R76Q"}}, "children": [{"name": "KC870040", "node_attrs": {"div": 0.14519, "accession": "KC870040", "clade_membership": {"value": "CRF64_BC"}, "country": {"value": "CN"}, "date": {"value": 2010.0}, "Strain_name": {"value": "YNFL22"}, "LANL_subtype": {"value": "CRF64_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A379G", "T424G", "A500G", "C503A", "A520G", "C575T", "A576G", "G603A", "A604G", "G607A", "G717A", "A812G", "G1002A", "C1060A", "A1450-", "T1451-", "-1456C", "-1457G", "G1458A", "A1489G", "A1529G", "G1640A", "G1643A", "C1749A", "G1763A", "C1767-", "G1769-", "A1770-", "T1771-", "A1772-", "G1773-", "A1774-", "C1775-", "A1776-", "A1777-", "G1778-", "G1779-", "A1780-", "A1781-", "T1785G", "-1787A", "G1794A", "G1972A", "A1982G", "A1984G", "G2009A", "C2047T", "C2083T", 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"L12F", "D81A"]}, "labels": {"aa": "INT: R14K, I31V, A278D, C280S; RT-p51: I135T, M377L, K385R; RT-p66: I135T, M377L, K385R, I466V; gp120: N1S, V2G, K18R, H33Q, V57F, K69E, I81V, T104-, N105-, -107K, G109V, -111N, V136A, R138K, L147F, K150E, -157D, E158K, N167T, T204E, N212K, T255I, D294E, H302Y, -308Q, -309K, A322T, H324L, A334K, -372I, -373S, -374N, -375S, -376S, -377S, -378E, -379I, E401Q, V427E, N432D, T433L, N434G, T437E, D446N, R448K; gp41: I4M, F8I, L9F, L91V, S101C, Q108E, D113G, N129S, R133K, K147Q, L150S, A151-, L152-, D153-, S154-, N239S, A245V, A268T, R276H, V289G, V318A, V321I, I322L, A325V, I329V, R334T; nef: A49V, E65G, F85L, Y120F, Q125H, R151G, Q188H; p17: K15R, M30R, K62R, T81A, K90R, G91E, V128-; p2: N9T, -12T; p24: V91I, T110N; p6: P24T, P30E, I31-, D32-, K33-, E34-, Y36-, A39T; p7: N8S; pro: I62V, A71T; rev: Q14R, S86N, C107W; tat: E19A, N23T, K40T; vif: L8M, F39V, K157R; vpr: P4S, L84M, A93T; vpu: -7K, -9A, L12F, D81A"}}}, {"name": "CRF64_BC_NODE_0000003", 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"T8176C", "G8181T", "C8210T", "T8214A", "G8255A", "G8264A", "T8281G", "A8288G", "G8327A", "C8328G", "A8402G", "T8426A", "A8500C", "A8516G", "G8554A", "T8646C", "A8656G", "C8809T", "G8923T", "C8990T", "C9129A"], "INT": ["R14K", "D134N", "R211K"], "RT-p51": ["A36E", "K104R", "Y121D", "A173E", "E177D", "I202V", "K211R", "A286T", "V317A", "I329V", "A376S", "T400I", "V437A"], "RT-p66": ["A36E", "K104R", "Y121D", "A173E", "E177D", "I202V", "K211R", "A286T", "V317A", "I329V", "A376S", "T400I", "V437A"], "gp120": ["K69R", "L101M", "T104Q", "-106V", "-107R", "-111T", "T112R", "-114R", "-115T", "-126I", "K143Q", "E158K", "K159D", "N160S", "S162N", "T181S", "I197L", "T208S", "P210T", "E240G", "I243M", "L249I", "T288A", "D297E", "R307G", "N311D", "A334D", "P335N", "N364K", "-368T", "-372L", "-373S", "-374N", "-375S", "-376S", "-377S", "-378D", "T433S", "T436N", "A472G"], "gp41": ["S42N", "R46K", "Q52H", "I72L", "N105K", "K106R", "N129D", "T130I", "R133S", "T165S", "I193V", "E225G", "K231R", "D247E", "S256L", "A268T", "R280T", "G293V", "L304Y", "V318I", "V321I", "C326W", "I329V", "A342R"], "nef": ["I20M", "D28E", "D53A", "R71K", "Y102H", "K105R", "A156V", "R194M"], "p17": ["Q65H", "A67S", "G71A", "Q112-", "Q113-", "K114-", "T115-", "E120A", "A121D"], "p2": ["-10A"], "p24": ["V91N", "A92P", "E98D", "T148V"], "p6": ["S3N", "F17E", "G18-", "E19-", "T22A", "P30L", "A39T", "N47S"], "p7": ["Q9P"], "pro": ["P63S"], "rev": ["Q14R", "I21F", "R66G", "P72S", "Q74P", "S86N", "E98D", "P100S"], "tat": ["N12K", "E19K", "S31C", "V36A", "F38L", "Q39H", "N67V"], "vif": ["R33K", "N36K", "R47S", "R63K", "L64V", "L91W", "R92K"], "vpr": ["E48D", "L84V"], "vpu": ["D3E", "D5G", "Y6I", "I8A", "-9V", "V10G", "R73S", "D78V"]}, "labels": {"aa": "INT: R14K, D134N, R211K; RT-p51: A36E, K104R, Y121D, A173E, E177D, I202V, K211R, A286T, V317A, I329V, A376S, T400I, V437A; RT-p66: A36E, K104R, Y121D, A173E, E177D, I202V, K211R, A286T, V317A, I329V, A376S, T400I, V437A; gp120: K69R, L101M, T104Q, -106V, -107R, -111T, T112R, -114R, -115T, -126I, K143Q, E158K, K159D, N160S, S162N, T181S, I197L, T208S, P210T, E240G, I243M, L249I, T288A, D297E, R307G, N311D, A334D, P335N, N364K, -368T, -372L, -373S, -374N, -375S, -376S, -377S, -378D, T433S, T436N, A472G; gp41: S42N, R46K, Q52H, I72L, N105K, K106R, N129D, T130I, R133S, T165S, I193V, E225G, K231R, D247E, S256L, A268T, R280T, G293V, L304Y, V318I, V321I, C326W, I329V, A342R; nef: I20M, D28E, D53A, R71K, Y102H, K105R, A156V, R194M; p17: Q65H, A67S, G71A, Q112-, Q113-, K114-, T115-, E120A, A121D; p2: -10A; p24: V91N, A92P, E98D, T148V; p6: S3N, F17E, G18-, E19-, T22A, P30L, A39T, N47S; p7: Q9P; pro: P63S; rev: Q14R, I21F, R66G, P72S, Q74P, S86N, E98D, P100S; tat: N12K, E19K, S31C, V36A, F38L, Q39H, N67V; vif: R33K, N36K, R47S, R63K, L64V, L91W, R92K; vpr: E48D, L84V; vpu: D3E, D5G, Y6I, I8A, -9V, V10G, R73S, D78V"}}}, {"name": "KC870036", "node_attrs": {"div": 0.14903, "accession": "KC870036", "clade_membership": {"value": "CRF64_BC"}, "country": {"value": "CN"}, "date": {"value": 2010.0}, "Strain_name": {"value": "YNFL16"}, "LANL_subtype": {"value": "CRF64_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G206A", "A386G", "A388G", "T419G", "C435A", "G607A", "G608T", "C618A", "G619A", "G644A", "G717A", "T718C", "T728C", "G1199A", "A1259G", "T1322C", "A1404G", "G1437A", "A1447C", "T1451C", "-1455A", "-1456A", "-1457T", "G1486A", "C1490T", "G1499A", "A1526G", "C1541A", "A1543G", "C1556T", "G1640A", "A1691G", "A1746G", "C1749T", "G1760A", "C1767G", "A1777G", "T1785-", "A1786-", "A1858G", "C1913T", "A1920G", "C1985A", "T2013C", "A2026G", "A2140G", "A2241G", "A2311G", "T2527C", "C2589T", "A2686G", "G2707A", "G2830A", "C2831T", "C2890T", "G3015A", "C3055T", "T3328C", "C3376T", "A3451G", "A3503G", "G3694A", "T3799C", "C3826T", "A3934G", "G3952A", "A3985G", "A4051G", "A4087G", "A4264G", "A4522T", "G4779A", "A4850G", "T4857C", "C5019T", "A5159G", "C5275T", "G5296A", "G5336A", "C5397T", "A5453T", "C5463T", "A5495G", "G5556A", "-5600T", "-5601G", "T5604-", "T5611A", "G5614A", "T5616G", "-5626A", "T5642A", "T5653A", "T5657G", "G5725A", "T5843C", "T5859G", "A5907G", "G5939A", "A5950T", "G6022A", "T6026A", "A6030G", "C6151T", "A6166T", "A6167G", "G6170A", "T6171C", "T6172C", "-6174A", "-6175C", "G6179A", "A6185G", "-6186G", "A6191T", "A6194-", "-6223A", "-6225G", "-6226A", "-6227G", "-6229A", "A6234G", "G6263T", "G6267C", "A6288T", "C6305A", "C6317G", "G6328C", "A6330C", "T6337G", "G6458A", "C6599T", "C6678A", "C6752G", "T6760G", "G6771A", "T6772C", "A6775T", "-6776A", "-6778T", "A6780G", "T6787A", "A6809G", "A6814G", "C6819T", "G6821A", "A6849G", "A6855C", "C6895T", "C6951A", "-6956T", "A6959G", "G6962A", "G6963A", "A6965-", "C6966-", "A6967-", "A6971G", "A6975C", "T6976A", "-6977G", "-6979C", "-6980C", "-6981T", "-6982G", "-6984T", "A6985T", "-6989G", "-6990A", "-6991T", "-6992A", "-6993T", "-6994A", "-6995G", "-6996A", "-6997C", "-6998T", "-6999T", "-7000C", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "-7006T", "-7007A", "-7008C", "-7009A", "A7013-", "C7014-", "A7015-", "A7016-", "T7017-", "C7018-", "G7072A", "C7152A", "A7155C", "T7156A", "A7161C", "T7162A", "A7163G", "C7164A", "G7256A", "G7268A", "G7304-", "C7305-", "A7306-", "G7307-", "T7308-", "G7309-", "G7459A", "C7463A", "A7553C", "T7682G", "A7683C", "A7689G", "T7690A", "A7700G", "G7701A", "A7732G", "A7771T", "T7801G", "G7846A", "G7868A", "C7874T", "G7921T", "A7936C", "G8022-", "A8023-", "T8024-", "T8025-", "C8026-", "T8027-", "T8028-", "C8029-", "G8030-", "C8031-", "A8032-", "C8033-", "T8034-", "T8035-", "G8036-", "C8037-", "C8038-", "T8039-", "G8040-", "G8041-", "G8042-", "A8043-", "C8044-", "G8045-", "A8046-", "C8047-", "C8048-", "C8120A", "C8293T", "G8304C", "G8349A", "G8396A", "A8400C", "G8499A", "A8500G", "A8530C", "A8536G", "G8729A", "C8741T", "A8746T", "G8794A", "C8813T", "G8864T"], "RT-p51": ["K49R", "T165I", "R307K"], "RT-p66": ["K49R", "T165I", "R307K", "I452M", "T470A"], "gp120": ["V2G", "K18R", "D29N", "M56I", "L58M", "E59G", "T104N", "N105D", "-106T", "-107N", "G109S", "-111G", "N113Y", "K127-", "V137L", "R138T", "Y145F", "L151I", "P155A", "K159N", "S161A", "D202N", "T275K", "Q300E", "H302Q", "S306N", "R307S", "-308S", "-309R", "N311K", "K319E", "A322V", "E323K", "K332R", "P335Q", "T366K", "-368F", "G370D", "-372I", "I386-", "T387-", "I388-", "M406I", "T433P", "T437N", "V468I", "A472T"], "gp41": ["L54M", "I84L", "Y127A", "N129R", "R133E", "K156N", "N166K", "A189T", "L191F", "L206F", "G240V", "F241-", "F242-", "A243-", "L244-", "A245-", "W246-", "D247-", "D248-", "L249-", "L273I", "L304F", "R334T"], "nef": ["G3S", "I20L", "D53S", "E63A", "E65G", "Y135F", "R151K", "E174D"], "p17": ["K18R", "H28Q", "L34I", "G91D", "R95K", "V128-"], "p2": ["G5S", "N8T", "-10N", "-11A"], "p24": ["S225G"], "p6": ["T23A", "P24S", "P30V", "K33R", "Y36-"], "p7": ["R7K", "K26R"], "pro": ["P39S", "K41R", "P63T", "I72T"], "rev": ["K30Q", "I59-", "L60-", "R61-", "T62-", "C63-", "L64-", "G65-", "R66-", "P67-", "T91N"], "tat": ["Y26F", "K40R", "Q76P"], "vif": ["V65I"], "vpr": ["T19A"], "vpu": ["L2I", "D3K", "-7K", "L12Y", "L16I", "I17S", "D40N", "V79A"]}, "labels": {"aa": "RT-p51: K49R, T165I, R307K; RT-p66: K49R, T165I, R307K, I452M, T470A; gp120: V2G, K18R, D29N, M56I, L58M, E59G, T104N, N105D, -106T, -107N, G109S, -111G, N113Y, K127-, V137L, R138T, Y145F, L151I, P155A, K159N, S161A, D202N, T275K, Q300E, H302Q, S306N, R307S, -308S, -309R, N311K, K319E, A322V, E323K, K332R, P335Q, T366K, -368F, G370D, -372I, I386-, T387-, I388-, M406I, T433P, T437N, V468I, A472T; gp41: L54M, I84L, Y127A, N129R, R133E, K156N, N166K, A189T, L191F, L206F, G240V, F241-, F242-, A243-, L244-, A245-, W246-, D247-, D248-, L249-, L273I, L304F, R334T; nef: G3S, I20L, D53S, E63A, E65G, Y135F, R151K, E174D; p17: K18R, H28Q, L34I, G91D, R95K, V128-; p2: G5S, N8T, -10N, -11A; p24: S225G; p6: T23A, P24S, P30V, K33R, Y36-; p7: R7K, K26R; pro: P39S, K41R, P63T, I72T; rev: K30Q, I59-, L60-, R61-, T62-, C63-, L64-, G65-, R66-, P67-, T91N; tat: Y26F, K40R, Q76P; vif: V65I; vpr: T19A; vpu: L2I, D3K, -7K, L12Y, L16I, I17S, D40N, V79A"}}}]}]}]}]}]}, {"name": "NODE_0000372", "node_attrs": {"div": 0.10495, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T1136C", "C1292A", "G1354C", "G1355A", "A1362C", "G1568A", "G3221T", "A3491G", "G3595A", "C4181A", "C5027T", "G5225A", "C5251A", "A5267G", "T5275G", "T5281C", "A5305G", "C5884T", "A5962G", "G5965A", "-6174C", "-6180A", "-6186C", "G6577A", "G6806A", "-6967A", "-6971A", "-6973T", "-6974A", "-6984C", "-7156A", "A7342T", "A7348C", "C7463A", "G7677A", "A8019G", "G8327A", "A8402G"], "INT": ["Q136K"], "RT-p51": ["A376S"], "RT-p66": ["A376S"], "gp120": ["N159E"], "gp41": ["S125N", "N239S"], "nef": ["I20M"], "p1": ["I5L"], "p24": ["D187E", "G208A"], "vpr": ["P4S", "G41S", "T55A"], "vpu": ["L2-"]}, "labels": {"aa": "INT: Q136K; RT-p51: A376S; RT-p66: A376S; gp120: N159E; gp41: S125N, N239S; nef: I20M; p1: I5L; p24: D187E, G208A; vpr: P4S, G41S, T55A; vpu: L2-"}}, "children": [{"name": "results/subtype_trees/CRF110_BC.nwk", "node_attrs": {"div": 0.12681, "clade_membership": {"value": "CRF110_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C419T", "G603A", "-700C", "A815G", "A836G", "T852A", "G908A", "C1175T", "A1418G", "A1528T", "A1529C", "G1543A", "G1737-", "A1738-", "G1739-", "G1740-", "A1741-", "G1742-", "A1804G", "A1969G", "A1981G", "T1987C", "A2002G", "A2003C", "A2005C", "G2008A", "T2080A", "A2125G", "A2200T", "A2350G", "A2404G", "G2413A", "A2461G", "G2524A", "A2599G", "C2605T", "C2613A", "A2641G", "T2654C", "G2752A", "G2926A", "C3023T", "C3055T", "G3094A", "A3096C", "G3097T", "A3220C", "T3262C", "T3391A", "C3399A", "A3427G", "G3473A", "G3477A", "G3484A", "A3485C", "T3496C", "T3497A", "T3499C", "A3508C", "A3529G", "G3532A", "A3545T", "A3556G", "C3567T", "T3589C", "T3649C", "A3651G", "A3664G", "A3667G", "T3695G", "A3703G", "T3712C", "A4273G", "A4459G", "C4471T", "C4474A", "A4475C", "C4492A", "A4498C", "C4501T", "G4677A", "G4687A", "T4730C", "G4779A", "A4806C", "C5114T", "G5336T", "C5442T", "A5581G", "A5594G", "A5709G", "C5727T", "A5796C", "G5853A", "C5878T", "T6178C", "G6179A", "-6195A", "-6205G", "-6215G", "-6217G", "A6395T", "A6425G", "A6438T", "A6589C", "C6745T", "-6776T", "G6947A", "-6970G", "-6972G", "-6975A", "-6978C", "-6979A", "-6980A", "-6983T", "C7096T", "A7135G", "T7403C", "C7625T", "A7627T", "G7668A", "A7688G", "A8011C", "C8071T", "T8097C", "A8191C", "A8194G", "A8245G", "A8276G", "T8277C", "G8280A", "C8290T", "A8294C", "C8296T", "A8303G", "G8304C", "C8328G", "A8337T", "G8348T", "A8364C", "A8409G", "C8543A", "G8678A", "C8809T", "A8887T", "C9075T", "T9132A"], "INT": ["I234L"], "RT-p51": ["A173K", "Q334S", "D432E", "A435E"], "RT-p66": ["A173K", "Q334S", "D432E", "A435E", "D460N", "R461K", "K464Q", "S468T", "E471D", "I484L", "S491V", "N519S", "S534A"], "gp120": ["-105N", "T181S", "T191A", "Y195F", "S335P"], "gp41": ["Q108Y", "N129D", "L265S", "I325A", "C326Y", "N331H", "R334A", "A342R", "Q345L"], "nef": ["S8R", "T23A", "K182M"], "p17": ["E55D", "A90T"], "p24": ["S41T", "T171C"], "p6": ["E20-", "E21-", "K42R"], "p7": ["E21V", "R26K"], "pro": ["K69H"], "rev": ["K115Q", "K116E"], "tat": ["I69V"], "vif": ["V31I", "R34K", "V65I"], "vpu": ["V10G"]}, "labels": {"aa": "INT: I234L; RT-p51: A173K, Q334S, D432E, A435E; RT-p66: A173K, Q334S, D432E, A435E, D460N, R461K, K464Q, S468T, E471D, I484L, S491V, N519S, S534A; gp120: -105N, T181S, T191A, Y195F, S335P; gp41: Q108Y, N129D, L265S, I325A, C326Y, N331H, R334A, A342R, Q345L; nef: S8R, T23A, K182M; p17: E55D, A90T; p24: S41T, T171C; p6: E20-, E21-, K42R; p7: E21V, R26K; pro: K69H; rev: K115Q, K116E; tat: I69V; vif: V31I, R34K, V65I; vpu: V10G", "clade": "CRF110_BC"}}, "children": [{"name": "MW419275", "node_attrs": {"div": 0.15963, "accession": "MW419275", "clade_membership": {"value": "CRF110_BC"}, "country": {"value": "CN"}, "date": {"value": 2012.0}, "Strain_name": {"value": "YN10189F"}, "LANL_subtype": {"value": "CRF110_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "A398G", "C434T", "C435T", "A500T", "A527C", "G534T", "C537T", "A548G", "C590T", "A603C", "C604A", "T614C", "G615A", "C618A", "C635T", "T668G", "C669A", "G671A", "G687C", "C688A", "A689G", "A690G", "A691C", "G693A", "G695A", "C697A", "T698G", "C749G", "A774C", "A776G", "T826A", "C830T", "A920G", "T1001A", "A1050T", "C1136T", "A1157C", "T1172C", "A1242T", "C1243G", "A1367G", "C1459A", "A1476G", "A1487G", "A1587C", "A1643G", "T1646G", "C1682T", "A1696G", "-1729T", "-1730C", "-1731G", "-1732G", "-1733G", "-1734G", "T1735A", "C1736G", "A1759G", "A1772G", "G1777A", "C1790T", "A1855G", "C1873T", "A1932G", "A1972G", "T1999C", "A2029G", "G2074T", "A2127G", "A2152T", "A2174T", "C2202A", "G2210A", "A2237T", "G2293A", "C2296T", "C2575T", "G2602T", "T2608C", "A2617G", "T2631A", "A2637G", "A2645G", "G2656C", "G2704A", "A2734G", "C2777T", "T2779G", "T2905C", "G2925A", "A2969G", "T3023A", "C3067A", "C3095T", "A3124G", "A3138G", "G3151A", 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"A8518C", "T8582C", "T8584A", "T8640A", "G8729A", "G8738A", "G8762A", "G8794C", "A8804G", "G8805A", "T8809A", "A8822G", "T8829A", "T8831C", "T8832C", "G8864T", "A8885G", "G8902T", "A8916C", "G8917A", "A8918C", "G8923A", "-8970A", "-8971C", "-8972T", "-8973T", "-8974T", "-8975C", "-8976C", "-8977G", "-8978C", "-8979T", "A8980-", "G8991A", "-8993T", "A8998G", "T9000G", "C9006G", "A9009-", "G9010-", "T9012A", "T9039C", "T9115C"], "INT": ["D6E"], "RT-p51": ["K11R", "T27S", "A36E", "D39N", "T48S", "E169D", "V179D", "Y181C", "M184V", "R277K", "I292V", "L310I", "D324E"], "RT-p66": ["K11R", "T27S", "A36E", "D39N", "T48S", "E169D", "V179D", "Y181C", "M184V", "R277K", "I292V", "L310I", "D324E", "I452M", "Q524E", "R530K", "V531I", "K558R"], "gp120": ["T35A", "V57D", "E59V", "D71G", "D74E", "E102N", "-106K", "-107V", "N108T", "N109Y", "T110N", "-111Q", "-112T", "E125-", "I126-", "A133V", "E136D", "Y145H", "I153V", "V154I", "P155E", "L156F", "N160T", "S161E", "N201K", "K203E", "E239K", "R245S", "S246Y", "L249K", "T250S", "N251D", "T255A", "E262Q", "K277E", "T288A", "D294A", "K307A", "-308Y", "N311K", "Q315L", "R316N", "H324D", "N327G", "T330N", "K332T", "N358Y", "-368M", "-370S", "I388L", "E401G", "R404Q", "M406I", "G443I", "D446N", "R448K", "D449N", "I463V", "E472A"], "gp41": ["T67A", "D109N", "K144I", "N160S", "N166H", "K172R", "G214E", "G220R", "D232G", "A245V", "F263L", "A268T", "V270A", "L294S", "S302N", "G314R", "V321L", "Q323L", "H331L"], "nef": ["M20I", "E38A", "A49P", "E59A", "F81Y", "L100I", "R151T", "E155K", "A156D", "C163S", "E174D", "S187I", "R192H", "R194K"], "p17": ["A67S", "L68F", "T90Q", "V94I", "I111M", "Q112K", "A118Q", "K119A", "E120K", "A121E"], "p2": ["-7T", "-10N"], "p24": ["I15L", "F32Y", "T107S"], "p6": ["-18G", "-19E", "K27R", "R33K"], "p7": ["S4G", "K41Q"], "pro": ["K45R", "Q92H"], "rev": ["I21V", "R38Q", "K50R", "I55L", "L64V", "A68E", "L73F", "H82N", "S86N", "*101Q", "S112F"], "tat": ["A21D", "Y26F", "S62G", "N67S", "G79R", "P81Q"], "vif": ["Y30H", "N36K", "F39V", "H48N", "E61D", "R63K", "I66V", "T74P", "R92G", "R93S", "Y111H", "K158R", "I159R", "K167Q", "N176K", "R181K", "R184K", "H187Q", "T188S", "H192Q"], "vpr": ["S4A", "Y15I", "L20I", "Q77R"], "vpu": ["-2Y", "-3D", "-6I", "-7L", "-9V", "L16F", "I20V", "V26A", "I28L", "W41R", "L74V", "L82V"]}, "labels": {"aa": "INT: D6E; RT-p51: K11R, T27S, A36E, D39N, T48S, E169D, V179D, Y181C, M184V, R277K, I292V, L310I, D324E; RT-p66: K11R, T27S, A36E, D39N, T48S, E169D, V179D, Y181C, M184V, R277K, I292V, L310I, D324E, I452M, Q524E, R530K, V531I, K558R; gp120: T35A, V57D, E59V, D71G, D74E, E102N, -106K, -107V, N108T, N109Y, T110N, -111Q, -112T, E125-, I126-, A133V, E136D, Y145H, I153V, V154I, P155E, L156F, N160T, S161E, N201K, K203E, E239K, R245S, S246Y, L249K, T250S, N251D, T255A, E262Q, K277E, T288A, D294A, K307A, -308Y, N311K, Q315L, R316N, H324D, N327G, T330N, K332T, N358Y, -368M, -370S, I388L, E401G, R404Q, M406I, G443I, D446N, R448K, D449N, I463V, E472A; gp41: T67A, D109N, K144I, N160S, N166H, K172R, G214E, G220R, D232G, A245V, F263L, A268T, V270A, L294S, S302N, G314R, V321L, Q323L, H331L; nef: M20I, E38A, A49P, E59A, F81Y, L100I, R151T, E155K, A156D, C163S, E174D, S187I, R192H, R194K; p17: A67S, L68F, T90Q, V94I, I111M, Q112K, A118Q, K119A, E120K, A121E; p2: -7T, -10N; p24: I15L, F32Y, T107S; p6: -18G, -19E, K27R, R33K; p7: S4G, K41Q; pro: K45R, Q92H; rev: I21V, R38Q, K50R, I55L, L64V, A68E, L73F, H82N, S86N, *101Q, S112F; tat: A21D, Y26F, S62G, N67S, G79R, P81Q; vif: Y30H, N36K, F39V, H48N, E61D, R63K, I66V, T74P, R92G, R93S, Y111H, K158R, I159R, K167Q, N176K, R181K, R184K, H187Q, T188S, H192Q; vpr: S4A, Y15I, L20I, Q77R; vpu: -2Y, -3D, -6I, -7L, -9V, L16F, I20V, V26A, I28L, W41R, L74V, L82V"}}}, {"name": "CRF110_BC_NODE_0000001", "node_attrs": {"div": 0.1335, "clade_membership": {"value": "CRF110_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G810A", "A1089G", "A1307G", "A1445G", "C1491T", "A1642G", "A1819G", "T1832C", "T1996C", "T2440C", "G2578A", "T3045C", "C3415T", "G3463A", "G3756A", "G4036A", "C4679T", "A4863G", "A4878T", "A5042C", "T5466C", "A5560C", "G5614T", "-5622A", "A5623T", "T5627-", "A5628-", "A5711G", "-6165G", "-6175C", "C6189G", "-6198C", "-6200A", "-6202T", "-6203G", "-6218G", "-6219G", "-6220A", "-6221A", "-6222A", "-6224G", "-6226T", "-6227G", "-6229A", "A6261T", "G6267A", "A6329G", "T6331A", "A6335T", "G6336C", "A6577T", "A6664G", "A6777G", "A6781C", "G6788A", "-6968A", "-6982C", "C7018T", "T7801A", "A8102G", "T8264G", "A8329G", "A8405G", "G8534A", "G8666A", "G8808C", "G8814A", "C8930A"], "RT-p51": ["V317A"], "RT-p66": ["V317A", "S554N"], "gp120": ["-116S", "E136V", "E241D", "K309N"], "gp41": ["N166K", "T267A", "R277S"], "nef": ["A156L"], "p1": ["K4R"], "p24": ["V27I", "S120G"], "p6": ["N47S"], "pro": ["S12P"], "rev": ["D85G"], "vif": ["R93G", "I98L"], "vpu": ["K35R"]}, "labels": {"aa": "RT-p51: V317A; RT-p66: V317A, S554N; gp120: -116S, E136V, E241D, K309N; gp41: N166K, T267A, R277S; nef: A156L; p1: K4R; p24: V27I, S120G; p6: N47S; pro: S12P; rev: D85G; vif: R93G, I98L; vpu: K35R"}}, "children": [{"name": "KC898987", "node_attrs": {"div": 0.15964, "accession": "KC898987", "clade_membership": {"value": "CRF110_BC"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09YNLC216031sg"}, "LANL_subtype": {"value": "CRF110_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A378C", "T419A", "A500C", "A530C", "C604T", "A605G", "T614A", "G644A", "C875T", "T978G", "T1091C", "C1096A", "C1169T", "C1174T", "A1292C", "G1388A", "T1403C", "A1450G", "T1451C", "C1459A", "A1464C", "A1486G", "A1487G", "G1488C", "G1489T", "C1492A", "T1493A", "A1495G", "A1496G", "G1498A", "A1499G", "A1500-", "T1501-", "T1511C", "A1568G", "T1613C", "C1644T", "A1725G", "-1729T", "-1730C", "-1731G", "-1732G", "-1733G", "-1734G", "T1735A", "C1736G", "C1775G", "A1942G", "A2012G", "A2029G", "G2042A", "C2149G", "T2212G", "T2494C", "G2602A", "G2675A", "A2676C", "G2682A", "A2685T", "A2698G", "A2699G", "A2734G", "T2845A", "T2863C", "T2935C", "T2944A", "C3067T", "C3096A", "T3165G", "A3280G", "T3433G", "G3487A", "A3490G", "T3541C", "T3542C", "T3566G", "A3604G", "G3643A", "C3652T", "C3773T", "T3820C", "T4085C", "T4129G", "T4132C", "A4391T", "A4495G", "C4608A", "T4656C", "T4701C", "T4703G", "G4708A", "C4721T", "G4774A", "A4787G", "C4806A", "C4841A", "A4860G", "G4864A", "T4907C", "A4911C", "G4932A", "G4941A", "C4967T", "T5006G", "T5028C", "C5042T", "A5059G", "G5060A", "A5085G", "T5147A", "G5226A", "C5303A", "C5412T", "A5453T", "C5461A", "A5467T", "G5493T", "A5495G", "G5556A", "A5557C", "T5568C", "C5569T", "T5579C", "T5611A", "A5613C", "-5621C", "A5702G", "T5826G", "T5836G", "A5845G", "A5846T", "A5947G", "G5956A", "C5974A", "A5983G", "A6022G", "G6023C", "A6030G", "T6154G", "G6170A", "A6177G", "C6178A", "C6186A", "A6188G", "C6190A", "A6195G", "-6199C", "-6201T", "-6204G", "G6205A", "-6206A", "-6207A", "-6208T", "-6209T", "-6210T", "-6211T", "-6212A", "-6213C", "-6214C", "G6215A", "-6216G", "G6217T", "-6223T", "-6225T", "A6268C", "C6278G", "G6284A", "T6287C", "T6289A", "T6298C", "A6324G", "T6334C", "G6368A", "G6463T", "A6489C", "A6573G", "T6582A", "A6583G", "C6589A", "G6638C", "A6640C", "A6649G", "G6653A", "T6654A", "A6659G", "G6773A", "T6778G", "C6781T", "A6786C", "A6796G", "G6801T", "G6818A", "C6819G", "A6848C", "C6855A", "A6884G", "T6892C", "G6936A", "T6958-", "-6969A", "G6970A", "-6977T", "-6981G", "-6986G", "-6987G", "-6988T", "-6989A", "-6990A", "-6991T", "-6998G", "-6999A", "-7000A", "-7001A", "-7002A", "-7003C", "-7004G", "-7005C", "-7006A", "-7007A", "-7009C", "C7079T", "A7107C", "G7133A", "T7134C", "-7152A", "A7153G", "A7155C", "A7157G", "-7162T", "G7190A", "G7268A", "A7270G", "G7492A", "A7502G", "A7620G", "T7622C", "G7631C", "T7642C", "A7646T", "C7692T", "G7702T", "G7726A", "A7771T", "A7773G", "A7832G", "T7879A", "A7880G", "A7998G", "C8011A", "A8110G", "T8149C", "G8181T", "A8196G", "G8197T", "A8255G", "T8268C", "C8270A", "A8271T", "T8323C", "G8335A", "G8396A", "T8440C", "A8458G", "A8461G", "T8483C", "A8543G", "T8567C", "T8582C", "G8588A", "T8711C", "G8739A", "T8740C", "A8746T", "G8762A", "G8795T", "A8804G", "A8815C", "T8831C", "A8854T", "A8922T", "G8923T", "-8970G", "-8971A", "-8972C", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A", "C8992-", "-8993T", "T9039C", "C9040T"], "INT": ["T206S", "A278D"], "RT-p51": ["D39E", "E194T", "G196E", "Q197L", "I202V", "D250E", "S334H", "M357R"], "RT-p66": ["D39E", "E194T", "G196E", "Q197L", "I202V", "D250E", "S334H", "M357R", "Y483H"], "gp120": ["I56M", "V57L", "E59G", "T104R", "-106I", "-107T", "N109S", "-111N", "-112G", "-114S", "-115T", "-117G", "-118N", "-119V", "-120T", "-121N", "-122N", "-123G", "-124Q", "R138N", "Q142E", "V144M", "Y145Q", "-157G", "N158K", "A172T", "K203N", "N212T", "E240G", "I243K", "E262H", "V267K", "T269A", "-308W", "N311T", "E312K", "R316M", "A322R", "K332Q", "A334K", "T344A", "G361D", "-370G", "-372K", "-373S", "-374N", "-375S", "-376S", "-377S", "-378G", "-379N", "-380E", "-381N", "-382A", "-385T", "P409S", "K418T", "V427T", "-433K", "N434T", "N435D", "E436D", "D446N", "E472K"], "gp41": ["T67A", "K106R", "S107P", "E110Q", "M115L", "T130I", "R133S", "K144R", "K156N", "N157S", "I177V", "I193V", "D232S", "G293V", "K298S", "I318V", "V322A", "Q323I"], "nef": ["V33A", "K39R", "H40R", "V133T", "Y135F", "R151S", "E158T", "H171L", "R194L"], "p1": ["L5F"], "p17": ["K15Q", "H28Q", "Q65H", "T90M", "D93E"], "p2": ["N8T", "-10S", "-11N", "M14L"], "p24": ["L83V", "P122Q", "T148I", "C171T", "E187D"], "p6": ["R16G", "-18G", "-19E", "K31-", "D32-", "R33K", "-35R", "-36E"], "p7": ["I12-"], "pro": ["I72V", "V82I"], "rev": ["R14N", "I18T", "S88G", "*101Q", "E117*"], "tat": ["Y26F", "R29S", "S31C", "Q39H", "K40R", "S61R", "S62R", "H65Y", "L68P"], "vif": ["L8M", "F39L", "R41K", "R63K", "R92G", "G93E", "M109L", "A116T", "A119T", "K158R", "K167E", "H187Q"], "vpr": ["Y15N", "S41N", "L67M", "Q77H"], "vpu": ["-2I", "-3Y", "-5A", "-6L", "-9V", "K32R", "R73Q", "L77V", "N80V"]}, "labels": {"aa": "INT: T206S, A278D; RT-p51: D39E, E194T, G196E, Q197L, I202V, D250E, S334H, M357R; RT-p66: D39E, E194T, G196E, Q197L, I202V, D250E, S334H, M357R, Y483H; gp120: I56M, V57L, E59G, T104R, -106I, -107T, N109S, -111N, -112G, -114S, -115T, -117G, -118N, -119V, -120T, -121N, -122N, -123G, -124Q, R138N, Q142E, V144M, Y145Q, -157G, N158K, A172T, K203N, N212T, E240G, I243K, E262H, V267K, T269A, -308W, N311T, E312K, R316M, A322R, K332Q, A334K, T344A, G361D, -370G, -372K, -373S, -374N, -375S, -376S, -377S, -378G, -379N, -380E, -381N, -382A, -385T, P409S, K418T, V427T, -433K, N434T, N435D, E436D, D446N, E472K; gp41: T67A, K106R, S107P, E110Q, M115L, T130I, R133S, K144R, K156N, N157S, I177V, I193V, D232S, G293V, K298S, I318V, V322A, Q323I; nef: V33A, K39R, H40R, V133T, Y135F, R151S, E158T, H171L, R194L; p1: L5F; p17: K15Q, H28Q, Q65H, T90M, D93E; p2: N8T, -10S, -11N, M14L; p24: L83V, P122Q, T148I, C171T, E187D; p6: R16G, -18G, -19E, K31-, D32-, R33K, -35R, -36E; p7: I12-; pro: I72V, V82I; rev: R14N, I18T, S88G, *101Q, E117*; tat: Y26F, R29S, S31C, Q39H, K40R, S61R, S62R, H65Y, L68P; vif: L8M, F39L, R41K, R63K, R92G, G93E, M109L, A116T, A119T, K158R, K167E, H187Q; vpr: Y15N, S41N, L67M, Q77H; vpu: -2I, -3Y, -5A, -6L, -9V, K32R, R73Q, L77V, N80V"}}}, {"name": "KF835524", "node_attrs": {"div": 0.15846000000000002, "accession": "KF835524", "clade_membership": {"value": "CRF110_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN338"}, "LANL_subtype": {"value": "CRF110_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A215G", "G216A", "A362C", "A386G", "G438A", "C482T", "A499C", "T571A", "T602C", "C618A", "C623T", "A725G", "C890T", "A956C", "A968C", "C1115T", "A1151G", "C1174G", "A1242T", "C1243G", "A1259G", "A1355G", "T1359A", "A1443G", "A1449-", "A1450-", "T1451-", "-1455G", "-1456G", "-1457C", "G1474A", "G1489A", "-1737G", "-1738A", "-1739G", "-1740G", "-1741A", "-1742G", "G1760A", "C1788G", "G1839A", "A1972G", "T1999C", "A2237T", "C2296T", "A2397G", "A2508C", "G2630A", "G2664C", "A2678C", "T2770C", "T2845C", "G2950A", "C2968T", "A3001G", "C3095T", "C3129T", "A3136G", "G3151A", "A3170G", "A3193G", "C3271T", "A3286G", "C3307A", "A3340G", "T3349C", "A3403G", "A3449T", "A3511C", "T3544C", "G3607A", "G3684A", "G3685A", "C3734A", "G3816A", "T3904C", "A4181C", "C4381T", "C4475A", "G4549A", "G4561A", "C4757T", "A4782G", "T4820A", "A4845G", "A4870C", "T4972G", "A5065G", "T5292C", "T5336A", "C5461T", "G5462A", "C5560T", "G5563A", "-5621G", "G5629A", "A5656G", "C5658T", "T5670G", "C5679T", "A5687T", "A5689T", "A5718G", "C5796A", "A5825G", "A5830G", "T5885C", "T5929C", "G6029C", "A6033G", "T6034G", "T6085G", "T6155G", "A6164G", "A6167G", "A6173T", "C6183T", "T6184G", "A6188C", "A6197G", "-6199G", "-6201G", "-6204T", "-6216A", "-6223A", "-6225A", "T6263G", "A6273G", "T6285A", "G6303A", "G6323A", "G6328C", "A6331G", "A6344T", "G6345A", "A6346T", "T6412C", "A6458G", "A6462T", "A6488C", "G6572A", "C6599T", "A6605G", "C6607T", "C6612T", "A6630G", "A6734G", "T6735A", "G6743A", "A6774G", "T6776G", "A6786G", "A6790T", "T6794G", "C6797G", "A6799C", "G6807A", "T6808G", "G6818T", "C6819T", "A6848G", "A6854G", "T6953-", "A6954-", "C6955-", "A6960C", "T6961A", "G6962A", "G6963T", "-6969T", "T6973A", "A6975T", "-6977C", "C6978A", "A6980G", "-6981C", "C7008-", "A7010-", "G7026A", "A7030T", "A7148G", "A7149T", "T7150G", "-7152C", "A7156T", "-7162G", "G7199A", "C7201T", "G7234A", "G7256A", "T7308G", "T7323C", "G7340A", "G7343T", "C7344T", "A7373C", "C7561A", "C7618T", "G7640A", "A7677G", "A7714C", "G7734A", "A7742G", "A7769G", "A7773C", "G7790A", "A7791G", "A7796T", "A7818G", "T7852C", "T7876C", "A7903C", "C7950T", "A7997G", "A8029T", "A8032G", "A8069T", "G8130A", "A8142G", "G8188A", "T8200A", "G8201A", "C8213A", "T8265C", "G8267A", "C8364T", "C8406A", "T8504C", "G8554A", "C8651T", "A8656G", "C8690T", "A8693G", "C8699A", "G8738A", "G8787A", "A8788G", "A8793G", "G8794A", "G8875A", "G8933T"], "INT": ["R14K", "K136Q", "L234I"], "RT-p51": ["T48S", "K101R", "E138A", "V179I", "G190A", "I195L", "P345L", "T359A", "D404E"], "RT-p66": ["T48S", "K101R", "E138A", "V179I", "G190A", "I195L", "P345L", "T359A", "D404E", "I452L", "V491L", "R530K", "Q547K"], "gp120": ["Y11H", "E59Q", "N60R", "H77Q", "L101V", "T104G", "N105D", "-106V", "-107S", "T110M", "-111T", "-112R", "-114N", "-115A", "-117V", "-118E", "-119G", "-123K", "-124D", "L137V", "R138K", "K140R", "V144E", "R150K", "-157K", "R164Y", "N202D", "K203M", "N212H", "E240K", "R245S", "N251D", "A253V", "H259R", "D294E", "D297N", "K307G", "-308G", "N311S", "E312N", "L314V", "Q315D", "S318K", "A322L", "K332E", "Y367-", "I386-", "R391K", "N432V", "-433T", "D449N", "V468I"], "gp41": ["V2L", "V7A", "G13S", "A14L", "I24L", "D113N", "N125S", "E137D", "K147E", "K156E", "N157T", "D163S", "T165S", "K172R", "P216L", "L242F", "S256C", "R276H", "E280G", "S299R", "A300T", "L304I", "V321A", "V322I"], "nef": ["R8C", "R71K", "K105R", "D149S", "R151E", "E158K", "R178K", "E197D"], "p17": ["R9S", "V35I", "D55A", "F79Y"], "p2": ["-7A", "N9G", "-12T"], "p24": ["E75D", "E79D", "T148S", "S210T"], "p6": ["-20E", "-21E", "-35A", "P37-"], "p7": ["R3K", "G8D", "P9S"], "pro": ["R14K"], "rev": ["K50R", "I55L", "S61C", "T62A", "Q74L", "A114T"], "tat": ["R29Y", "S62C", "E63K", "P81S"], "vif": ["I66V", "T74P", "D78E", "I87V", "N95T", "V129G", "K160R"], "vpr": ["I63T"], "vpu": ["L4-", "A8-", "G10-", "I17V", "Y27F", "I28L", "R75G"]}, "labels": {"aa": "INT: R14K, K136Q, L234I; RT-p51: T48S, K101R, E138A, V179I, G190A, I195L, P345L, T359A, D404E; RT-p66: T48S, K101R, E138A, V179I, G190A, I195L, P345L, T359A, D404E, I452L, V491L, R530K, Q547K; gp120: Y11H, E59Q, N60R, H77Q, L101V, T104G, N105D, -106V, -107S, T110M, -111T, -112R, -114N, -115A, -117V, -118E, -119G, -123K, -124D, L137V, R138K, K140R, V144E, R150K, -157K, R164Y, N202D, K203M, N212H, E240K, R245S, N251D, A253V, H259R, D294E, D297N, K307G, -308G, N311S, E312N, L314V, Q315D, S318K, A322L, K332E, Y367-, I386-, R391K, N432V, -433T, D449N, V468I; gp41: V2L, V7A, G13S, A14L, I24L, D113N, N125S, E137D, K147E, K156E, N157T, D163S, T165S, K172R, P216L, L242F, S256C, R276H, E280G, S299R, A300T, L304I, V321A, V322I; nef: R8C, R71K, K105R, D149S, R151E, E158K, R178K, E197D; p17: R9S, V35I, D55A, F79Y; p2: -7A, N9G, -12T; p24: E75D, E79D, T148S, S210T; p6: -20E, -21E, -35A, P37-; p7: R3K, G8D, P9S; pro: R14K; rev: K50R, I55L, S61C, T62A, Q74L, A114T; tat: R29Y, S62C, E63K, P81S; vif: I66V, T74P, D78E, I87V, N95T, V129G, K160R; vpr: I63T; vpu: L4-, A8-, G10-, I17V, Y27F, I28L, R75G"}}}]}]}, {"name": "results/subtype_trees/CRF57_BC.nwk", "node_attrs": {"div": 0.12246, "clade_membership": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T263G", "T897C", "T902C", "T944A", "A956G", "G959A", "A968C", "A980G", "A989G", "T1001A", "A1016G", "A1070G", "C1078G", "G1090A", "C1094T", "G1101A", "T1103C", "G1109A", "C1115A", "G1142A", "A1173T", "A1192G", "G1199A", "T1237A", "T1245C", "A1256G", "A1263T", "C1331T", "G1339A", "A1346G", "T1359A", "T1451G", "C1714A", "T2035C", "A2086T", "C2087T", "A2098C", "C2101T", "C2107T", "C2266T", "T2579C", "A2612G", "A2665C", "A2969G", "T3505A", "T3644C", "A3676G", "A3727C", "T3909A", "T3946C", "G3952A", "T3962C", "C3991T", "C4006G", "C4021A", "C4024T", "G4027A", "G4036A", "C4042T", "A4112G", "C4428T", "A4433G", "A4766G", "T4886C", "A4911T", "-5621A", "-5622T", "T5624G", "-5626T", "A5644G", "-6165A", "-6203G", "-6204G", "-6205T", "-6206A", "-6208A", "-6209A", "-6210T", "A6228-", "A6230-", "A6316G", "G6339A", "T6654A", "A6742G", "-6776A", "G6801A", "C6857T", "C6955-", "-6968T", "-6969A", "-6970C", "-6975C", "-6978A", "-6983A", "-6988T", "-7007A", "-7009C", "A7149T", "-7152A", "G7702A", "G7885A", "G8188A", "A8227C", "T8426A", "G8429A", "G8432A", "T8440C", "G8446A", "C8451T", "G8453A", "A8456T", "A8469C", "C8471T", "T8477C", "T8483C", "C8488A", "A8489C", "G8490A", "T8492C", "C8494A", "C8510T", "A8516G", "G8517A", "A8518G", "A8522G", "G8534A", "G8729A"], "INT": ["L45Q", "M84I", "I113V", "T218I", "I220V"], "RT-p51": ["C162H", "K166R", "I292V"], "RT-p66": ["C162H", "K166R", "I292V"], "gp120": ["N160S", "V267E", "A334T"], "gp41": ["K122R", "D163N", "D232N", "V321L"], "nef": ["D28E", "V33A", "R35Q", "E38D", "I43L", "A49D", "A50T", "T51N", "E59R"], "p17": ["G123-"], "p2": ["-7T", "N9K", "-12T"], "p24": ["D71E", "E79D", "A116G", "S120N", "V124I", "D128E", "T148S", "K154R", "F169Y", "T178S", "R203K", "S210T"], "p6": ["A12E"], "rev": ["A114T"], "vif": ["M109L"], "vpu": ["L4-", "A8-", "I13V"]}, "labels": {"aa": "INT: L45Q, M84I, I113V, T218I, I220V; RT-p51: C162H, K166R, I292V; RT-p66: C162H, K166R, I292V; gp120: N160S, V267E, A334T; gp41: K122R, D163N, D232N, V321L; nef: D28E, V33A, R35Q, E38D, I43L, A49D, A50T, T51N, E59R; p17: G123-; p2: -7T, N9K, -12T; p24: D71E, E79D, A116G, S120N, V124I, D128E, T148S, K154R, F169Y, T178S, R203K, S210T; p6: A12E; rev: A114T; vif: M109L; vpu: L4-, A8-, I13V", "clade": "CRF57_BC"}}, "children": [{"name": "KC899008", "node_attrs": {"div": 0.15909, "accession": "KC899008", "clade_membership": {"value": "CRF57_BC"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09YNLX19sg"}, "LANL_subtype": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A418G", "C435T", "G481A", "C482G", "A513T", "A518G", "A556G", "C558T", "G562A", "A581G", "G607A", "T614C", "A643G", "G651A", "A690C", "-700C", "A1007T", "G1205A", "C1209T", "C1230A", "G1232A", "A1544G", "C1550T", "A1643G", "T1646G", "C1682T", "T1754G", "G1763A", "C1768T", "G1861A", "A1969G", "A2007G", "T2080G", "A2128G", "A2131G", "A2344G", "T2356C", "A2362G", "A2404C", "G2580A", "A2592G", "T2654C", "G2682A", "T2737C", "A2743G", "G2752A", "T2770C", "T2776C", "G2788T", "C2806T", "C2828A", "A2829T", "T2845C", "T2863C", "A2884G", "T2905C", "T2932C", "G2950A", "G2951A", "C2968T", "A3043G", "C3067A", "G3093A", "A3099G", "A3144G", "G3188A", "T3221G", "T3225G", "A3230T", "A3449C", "A3486G", "G3491A", 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"I46V", "A55T", "R62K"], "vpu": ["-2L", "-3N", "-4I", "-5N", "-6Y", "-7R", "-8L", "-9G", "E29K", "K35R", "W41C", "R45K", "G72E", "R73H", "D81E"]}, "labels": {"aa": "INT: E11D, N117Y, K136T, T206S, A278D; RT-p51: K103N, G196E, Q245M, A286T, D324E, G333E, D335G, K350R, V365I, S376A, M377R, S379C; RT-p66: K103N, G196E, Q245M, A286T, D324E, G333E, D335G, K350R, V365I, S376A, M377R, S379C, I452L, K464R, V466I; gp120: K18R, V40I, Q54R, V57W, E59K, N60K, H77Q, I81V, K93R, L94M, P96H, -105Y, -106C, -107K, N109D, -111N, -112V, N113R, E125-, I126-, K127-, A133T, E136L, L137V, R138K, V144E, -157D, N158G, E159K, S160D, T170S, A172T, T181N, T191A, A238S, E240D, E241G, E247Q, N248D, T250K, E262K, T269I, N272S, T275R, I279V, T288A, F289I, H302Y, S306R, K307E, -308K, K309N, E312K, Q315K, R316M, S318G, T330I, T334N, S335I, N358D, S365G, -368G, N369-, T371-, -374T, -375Y, -376D, -377P, -378N, -379G, -380T, -381E, -382G, -383S, -384K, -385F, T387I, I388L, A412E, N432T, -433Q, T437-, G443E; gp41: I4L, 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"C8328T", "A8393G", "A8823G", "G8923T"], "RT-p51": ["D177E"], "RT-p66": ["D177E"], "gp120": ["I56M"], "gp41": ["L330R", "A342I"], "nef": ["N161D", "R194M"], "p24": ["V91I"], "rev": ["S8N", "T62S", "P100S"]}, "labels": {"aa": "RT-p51: D177E; RT-p66: D177E; gp120: I56M; gp41: L330R, A342I; nef: N161D, R194M; p24: V91I; rev: S8N, T62S, P100S"}}, "children": [{"name": "CRF57_BC_NODE_0000002", "node_attrs": {"div": 0.12614, "clade_membership": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A643G", "-700C", "C1137T", "C2202A", "A3144G", "T3589C", "A4581G", "G4677A", "C4721A", "A4806C", "C5869A", "A6022G", "T6085G", "-6195G", "-6199C", "-6202C", "G6203A", "-6220G", "-6221A", "-6226G", "-6228A", "-6230A", "C6252T", "A6326G", "A6777G", "A6850T", "G6935A", "-6956T", "-6977T", "-6979A", "-6980T", "-6982G", "A6983T", "C6984A", "-6986C", "-6987A", "-6991C", "C7018T", "A7153T", "A7156G", "T7630A", "A7688G", "G7717A", "A7771C", "A7818G", "G8079A", "A8098G", "C8213T", "T8756C", "A8914G", "A8936G", "-8970A", "-8972T", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A"], "INT": ["K269R"], "RT-p51": ["A36E", "K350R"], "RT-p66": ["A36E", "K350R"], "gp120": ["N5K", "E34D", "H77Q", "T104-", "-107K", "-115S", "-124Q", "A133V", "A253V", "K332N", "G361R"], "gp41": ["N129D", "K156N", "K172R", "R259Q", "L304F"], "nef": ["H191R"], "p17": ["K103R"], "rev": ["S84G"], "vif": ["V31I", "D45E", "T74P"]}, "labels": {"aa": "INT: K269R; RT-p51: A36E, K350R; RT-p66: A36E, K350R; gp120: N5K, E34D, H77Q, T104-, -107K, -115S, -124Q, A133V, A253V, K332N, G361R; gp41: N129D, K156N, K172R, R259Q, L304F; nef: H191R; p17: K103R; rev: S84G; vif: V31I, D45E, T74P"}}, "children": [{"name": "KC898991", "node_attrs": {"div": 0.1564, "accession": "KC898991", "clade_membership": {"value": "CRF57_BC"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09YNLC496sg"}, "LANL_subtype": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": 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"A4459G", "A4558C", "G4737A", "G4779A", "A4786C", "T4868C", "A4870G", "T4914C", "A4974T", "C5034T", "C5052A", "A5059G", "T5062G", "C5114T", "A5142T", "A5143G", "T5170C", "T5237C", "G5431A", "C5461T", "A5537-", "A5538-", "C5539-", "C5551T", "G5556A", "T5579C", "T5611G", "T5616C", "A5621G", "T5622G", "G5624A", "G5629A", "G5643T", "C5678T", "A5721G", "T5728A", "G5781C", "G5784A", "-5799G", "-5800G", "-5801T", "-5802G", "-5803G", "-5804A", "-5805C", "-5806A", "-5807C", "-5808G", "-5809G", "-5810G", "T5851C", "G5893A", "A5907G", "G6023T", "G6029A", "A6113G", "A6165C", "A6166T", "T6169C", "G6170T", "T6171A", "T6172C", "-6175A", "C6183A", "T6184C", "T6187C", "-6198G", "-6200T", "-6201A", "-6207C", "-6211G", "-6212A", "-6213G", "-6214A", "-6215G", "-6216T", "-6217G", "-6219T", "-6222T", "-6223G", "-6224C", "-6225A", "-6227G", "-6229A", "A6273G", "G6303A", "G6323A", "A6324G", "A6327G", "G6328T", "A6330G", "A6332G", "T6334G", "G6336A", "T6337G", "T6340C", "C6370T", "A6371G", "G6451A", "A6461G", "T6493C", "G6569A", "A6573G", "A6577C", "C6599A", "G6601A", "A6608G", "T6643A", "A6648C", "G6653A", "A6654C", "G6773A", "A6774G", "A6776G", "A6806G", "C6824T", "C6855A", "A6856T", "C6862A", "C6937G", "T6953-", "A6954-", "-6957T", "A6969T", "T6976C", "-6981G", "-6989G", "-6990A", "-7000T", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "-7006A", "C7009A", "A7036G", "G7055A", "G7065A", "A7107T", "C7124T", "A7154C", "A7158G", "G7160-", "A7161-", "A7163T", "T7170C", "G7309A", "G7340A", "T7403C", "G7405A", "G7477A", "C7486T", "A7620G", "G7631C", "G7701A", "G7705A", "G7764A", "A7782G", "T7783C", "A7791G", "A7796T", "C7852A", "G7936A", "G7944A", "G8017C", "A8029G", "G8030A", "C8031G", "G8087A", "T8091G", "G8114C", "G8231A", "G8254A", "C8270G", "G8271T", "G8274A", "T8321A", "T8366A", "G8385A", "C8406A", "A8413G", "C8415A", "G8427A", "C8477T", "A8493T", "A8494C", "A8534G", "T8584A", "A8636T", "T8786C", "A8793G", "G8814A", "T8832C", "G8846A", "A8859G", "G8864T", "G8875A", "A8886C", "C8904G", "A8905G", "A8906C", "C8930T", "A8967G", "-8971G", "C9006G", "T9039C", "T9068C", "C9108T"], "INT": ["Y83H", "I135V", "T206S"], "RT-p51": ["K11Q", "S68G", "L74V", "K101E", "H162S", "M184V", "G190S", "E203D", "E207A", "L283I", "A286V", "P345Q", "A371V", "S376A", "M377T"], "RT-p66": ["K11Q", "S68G", "L74V", "K101E", "H162S", "M184V", "G190S", "E203D", "E207A", "L283I", "A286V", "P345Q", "A371V", "S376A", "M377T"], "gp120": ["K18R", "V57F", "E59K", "S87G", "N109A", "T110N", "-111Y", "-112T", "-114D", "-116V", "-117P", "-123M", "K140R", "R150K", "-157S", "E159S", "S161E", "S162Y", "I173V", "K203E", "E239K", "E240G", "E241D", "L249I", "N252D", "E265A", "E267T", "K307R", "-308G", "R316K", "S318G", "H324Y", "T334N", "S365G", "Y367-", "-368F", "-370G", "-372F", "-385T", "E401K", "R404Q", "K418I", "N432I", "N435Q", "E436S", "T437S", "I439T"], "gp41": ["G13S", "K106R", "D109E", "E110Q", "R133K", "K144R", "S154N", "N160S", "N163G", "T165S", "G214E", "A243S", "D262N", "F263C", "V271L", "A310T", "Q323V", "R324N", "F340I"], "nef": ["S8R", "A15T", "E24G", "P25T", "G29R", "N51S", "F81Y", "E98D", "R151G", "E158K", "M173V", "E174D", "R178K", "K182Q", "Q188G"], "p1": ["L5I"], "p17": ["L46V", "K58R", "A90T", "I92V", "N109K", "I111S", "Y132F"], "p2": ["S5G", "-10I", "-11M", "T12-", "I13-"], "p24": ["P14A", "D79E", "S148T", "A208V"], "p6": ["-18E", "-19E", "E20P", "E21T", "T22L", "T23A", "A25-", "P26-", "E34D", "-35T", "P37-"], "p7": ["K10R", "R11T", "M46L"], "pro": ["N37D", "D60E", "P63V", "L93I"], "rev": ["N8-", "R14K", "E30K", "E57Q", "S61E", "R80K", "G89A"], "tat": ["E19K", "R29C", "Q54-", "P59S", "L68P", "R76Q", "G79R"], "vif": ["V51I", "V65I", "K67T", "N95S", "Y110H", "I130F", "P156T", "K158R", "I159R", "N186C"], "vpr": ["E13V", "Y45H"], "vpu": ["A11D", "T24I", "W41R", "E58D", "-68V"]}, "labels": {"aa": "INT: Y83H, I135V, T206S; RT-p51: K11Q, S68G, L74V, K101E, H162S, M184V, G190S, E203D, E207A, L283I, A286V, P345Q, A371V, S376A, M377T; RT-p66: K11Q, S68G, L74V, K101E, H162S, M184V, G190S, E203D, E207A, L283I, A286V, P345Q, A371V, S376A, M377T; gp120: K18R, V57F, E59K, S87G, N109A, T110N, -111Y, -112T, -114D, -116V, -117P, -123M, K140R, R150K, -157S, E159S, S161E, S162Y, I173V, K203E, E239K, E240G, E241D, L249I, N252D, E265A, E267T, K307R, -308G, R316K, S318G, H324Y, T334N, S365G, Y367-, -368F, -370G, -372F, -385T, E401K, R404Q, K418I, N432I, N435Q, E436S, T437S, I439T; gp41: G13S, K106R, D109E, E110Q, R133K, K144R, S154N, N160S, N163G, T165S, G214E, A243S, D262N, F263C, V271L, A310T, Q323V, R324N, F340I; nef: S8R, A15T, E24G, P25T, G29R, N51S, F81Y, E98D, R151G, E158K, M173V, E174D, R178K, K182Q, Q188G; p1: L5I; p17: L46V, K58R, A90T, I92V, N109K, I111S, Y132F; p2: S5G, -10I, -11M, T12-, I13-; p24: P14A, D79E, S148T, A208V; p6: -18E, -19E, E20P, E21T, T22L, T23A, A25-, P26-, E34D, -35T, P37-; p7: K10R, R11T, M46L; pro: N37D, D60E, P63V, L93I; rev: N8-, R14K, E30K, E57Q, S61E, R80K, G89A; tat: E19K, R29C, Q54-, P59S, L68P, R76Q, G79R; vif: V51I, V65I, K67T, N95S, Y110H, I130F, P156T, K158R, I159R, N186C; vpr: E13V, Y45H; vpu: A11D, T24I, W41R, E58D, -68V"}}}, {"name": "JX679207", "node_attrs": {"div": 0.14842, "accession": "JX679207", "clade_membership": {"value": "CRF57_BC"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "1439"}, "LANL_subtype": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T307G", "G315T", "G318-", "A393C", "C419T", "T424G", "G481A", "C482G", "G491A", "A494T", "G495A", "A500C", "C558A", "G562A", "A576G", "A585G", "C586T", "T614A", "C669-", "A670-", "G671-", "A678G", "C684A", "C926T", "A1025G", "A1349G", "A1400G", "G1421A", "C1491T", "C1756T", "C1768A", "C1790T", "A1804G", "T2101C", "T2499G", "C2579T", "G2580A", "A2611G", "C2968T", "G3044T", "T3045C", "G3382A", "C3405T", "T3436C", "T3530C", "A3592G", "C3763T", "G3816A", "G3825A", "C3857A", "G3859A", "A3866G", "G3896A", "T3976C", "A4181C", "A4254C", "T4428C", "C4471T", "A4661G", "G4689A", "T4694G", "T4793C", "T4800C", "T4820G", "A4870C", "C4886A", "G5040A", "G5066A", "G5275A", "A5282C", "A5285C", "T5292C", "C5306A", "A5495G", "G5614T", "T5617A", "T5626G", "C5630G", "A5631G", "G5632A", "G5635A", "G5636T", "A5659T", "G5668A", "T5704C", "A5711G", "A5718G", "A5737G", "T5859G", "A5881G", "T5929C", "A6030G", "C6067A", "C6174A", "-6175C", "A6180C", "C6183G", "A6185G", "C6186T", "-6198C", "-6200C", "-6201T", "A6206G", "-6207G", "A6208T", "T6210C", "-6211C", "-6212T", "-6213A", "-6214C", "-6215A", "-6216A", "-6217T", "-6218G", "-6219A", "-6222G", "-6223T", "-6224G", "-6225G", "-6227C", "-6229G", "T6242A", "G6274A", "C6278A", "T6285A", "T6295G", "A6329G", "T6331G", "A6335T", "G6336C", "A6339G", "C6394T", "C6396A", "A6535G", "A6605G", "G6638A", "T6641C", "C6660T", "A6706G", "A6734G", "T6735A", "C6758T", "A6765T", "G6771A", "A6774C", "A6779C", "C6797T", "A6799C", "G6802T", "A6825G", "C6826T", "C6833A", "C6834A", "A6840G", "C6937A", "G6940A", "G6947A", "-6955G", "-6957C", "-6972C", "T6973A", "C6975A", "-6981A", "-6989C", "-6990T", "-6992A", "C7008A", "A7040G", "C7096T", "A7148T", "T7149C", "A7154G", "A7158C", "G7160C", "-7162G", "A7163C", "G7256C", "G7268A", "A7269C", "A7270T", "G7285A", "T7411G", "G7440A", "A7463C", "A7572G", "C7603T", "T7622A", "G7628A", "C7658G", "A7696C", "C7699T", "A7714G", "G7734A", "G7790A", "G7846A", "G7873A", "T7876C", "A7880G", "A7885G", "T7921C", "C7926T", "T7929A", "A8006G", "A8011C", "C8037T", "C8047T", "T8164C", "A8194G", "C8220G", "A8266C", "G8267A", "A8273C", "G8354A", "A8417G", "G8476C", "A8519G", "T8568C", "A8653G", "G8678A", "A8701T", "C8715G", "A8717C", "G8795T", "G8799A", "A8806C", "T8831C", "G8844A", "T8847G", "G8848C", "C8904A", "A8905T", "A8906G", "-8971A", "A9005G", "T9012A", "C9078T", "A9095G"], "INT": ["R14K", "S17N", "L28I", "I31V", "D41N", "K136Q", "K160T", "I218T"], "RT-p51": ["I135R", "H162Y", "R166K", "V317S", "A437V"], "RT-p66": ["I135R", "H162Y", "R166K", "V317S", "A437V"], "gp120": ["V2G", "E59G", "D71E", "N109V", "T110S", "-111K", "-112H", "-114A", "-116S", "-117G", "-118T", "-119Y", "-120N", "-121E", "-122S", "-123G", "S130T", "Q142K", "V144E", "-157D", "N158E", "S160N", "Y163N", "R164N", "L165S", "I166T", "N167S", "T181N", "N251D", "E262K", "S263P", "T269I", "D294E", "H302Y", "N304I", "S306N", "K307A", "-308S", "K309Q", "Q315Y", "R316N", "H324R", "P326-", "-328N", "K329R", "-368M", "N369-", "T371-", "-385N", "I396V", "N432S", "-433N", "N434E", "N435T", "E436Q", "T437P", "V468L", "E472T"], "gp41": ["R46K", "M54L", "K90R", "S107T", "D109K", "Q119E", "I193V", "T208I", "L209H", "I235V", "A245V", "R277S", "T306S", "L321F", "V322I", "Q323R"], "nef": ["S45T", "K104R", "Y120F", "Q125D", "R151S", "V153I", "E155A", "V168M", "C169A", "Q188M"], "p17": ["M30R", "G49E", "A54T", "E55D", "L75I", "R76K", "T81A", "T84V", "D93E", "Q113K", "T115A", "Q116K", "Q117E"], "p6": ["P26L", "P30Q", "K42R"], "p7": ["P9S"], "rev": ["H53R", "I55L", "P67S", "S106P", "K116E"], "tat": ["K40R", "P73S", "L74I"], "vif": ["A35T", "N36K", "D78E", "N95T", "A152T"], "vpr": ["S4P", "I60L", "I61L", "I63T", "L68M"], "vpu": ["-2L", "-3Y", "-4I", "-5D", "-6Y", "-7V", "-8G", "-9I", "V10I", "I18L", "V21I", "K35R", "K44E"]}, "labels": {"aa": "INT: R14K, S17N, L28I, I31V, D41N, K136Q, K160T, I218T; RT-p51: I135R, H162Y, R166K, V317S, A437V; RT-p66: I135R, H162Y, R166K, V317S, A437V; gp120: V2G, E59G, D71E, N109V, T110S, -111K, -112H, -114A, -116S, -117G, -118T, -119Y, -120N, -121E, -122S, -123G, S130T, Q142K, V144E, -157D, N158E, S160N, Y163N, R164N, L165S, I166T, N167S, T181N, N251D, E262K, S263P, T269I, D294E, H302Y, N304I, S306N, K307A, -308S, K309Q, Q315Y, R316N, H324R, P326-, -328N, K329R, -368M, N369-, T371-, -385N, I396V, N432S, -433N, N434E, N435T, E436Q, T437P, V468L, E472T; gp41: R46K, M54L, K90R, S107T, D109K, Q119E, I193V, T208I, L209H, I235V, A245V, R277S, T306S, L321F, V322I, Q323R; nef: S45T, K104R, Y120F, Q125D, R151S, V153I, E155A, V168M, C169A, Q188M; p17: M30R, G49E, A54T, E55D, L75I, R76K, T81A, T84V, D93E, Q113K, T115A, Q116K, Q117E; p6: P26L, P30Q, K42R; p7: P9S; rev: H53R, I55L, P67S, S106P, K116E; tat: K40R, P73S, L74I; vif: A35T, N36K, D78E, N95T, A152T; vpr: S4P, I60L, I61L, I63T, L68M; vpu: -2L, -3Y, -4I, -5D, -6Y, -7V, -8G, -9I, V10I, I18L, V21I, K35R, K44E"}}}]}, {"name": "CRF57_BC_NODE_0000003", "node_attrs": {"div": 0.12509, "clade_membership": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A690G", "A692G", "G695T", "T698G", "G701-", "G703-", "A704-", "A1025G", "T5611G", "C6067A", "G6074A", "A6194-", "G6204T", "A6333G", "-6955C", "A7677G", "G8304C"], "gp120": ["D71E", "D74N", "E102R", "-105D", "-370S", "N432L"], "gp41": ["N125S", "Q323C", "R334T"], "p17": ["E120D"], "pro": ["P63H"]}, "labels": {"aa": "gp120: D71E, D74N, E102R, -105D, -370S, N432L; gp41: N125S, Q323C, R334T; p17: E120D; pro: P63H"}}, "children": [{"name": "CRF57_BC_NODE_0000004", "node_attrs": {"div": 0.12887, "clade_membership": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "C618A", "A1461G", "A1464C", "A1804G", "G2182A", "G3091A", "C3380T", "A3508G", "A3931G", "A4525G", "T4914C", "G5036A", "C5114T", "T5293C", "G5624A", "G5629A", "G5643T", "G6158A", "A6176T", "-6200A", "-6201G", "-6214A", "A6324G", "A6458G", "A6605G", "A6608C", "G6611T", "T6778G", "A6848C", "-6972G", "A7148G", "G7640A", "A7714C", "C8270T", "A8441G", "G8844A"], "gp120": ["-157G", "N202D", "N251D", "N252H", "A253F"], "gp41": ["K144R", "N163D"], "nef": ["V168M"], "p17": ["K18R", "-122K"], "p2": ["I13V", "M14L"], "p6": ["K42R"], "vif": ["Y110H"], "vpu": ["A11D"]}, "labels": {"aa": "gp120: -157G, N202D, N251D, N252H, A253F; gp41: K144R, N163D; nef: V168M; p17: K18R, -122K; p2: I13V, M14L; p6: K42R; vif: Y110H; vpu: A11D"}}, "children": [{"name": "KC898985", "node_attrs": {"div": 0.15752000000000002, "accession": "KC898985", "clade_membership": {"value": "CRF57_BC"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09YNLC216002sg"}, "LANL_subtype": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C419T", "A500C", "C525A", "A617G", "G619A", "C669A", "A674G", "A678C", "C679A", "A680G", "C681G", "A682C", "C684A", "G686A", "C688A", "A689G", "A691C", "G692T", "T695C", "C697G", "G702-", "T722C", "A833T", "T852A", "C926T", "A1090G", "T1173G", "A1199G", "G1328A", "G1346A", "A1349C", "C1460T", "G1466A", "G1469A", "C1491T", "A1496C", "A1588G", "C1644T", "A1772G", "A1781G", "T1832A", "G1839A", "G1845A", "A1894G", "A1920G", "A1966T", "A1981G", "C1985G", "T2080G", "A2185G", "A2237T", "T2266C", "T2269C", "C2281T", "G2392A", "T2456C", "A2498G", "A2519G", "C2579A", "A2611G", "G2707A", "T2770C", "G2951A", "C2968A", "A3026C", "A3127C", "A3136G", "C3223T", "T3359C", "T3391C", "C3405T", "A3451G", "G3484A", "T3551C", "T3589C", "G3684A", "T3742C", "T3977C", "A4027G", "T4132C", "A4246G", "G4520A", "G4582A", "C4608A", "C4721A", "T4832A", "T4907C", "A4966G", "C4977T", "A5048C", "A5059G", "T5062G", "A5082G", "T5237C", "A5278G", "G5357A", "C5461A", "A5621C", "G5644A", "C5658T", "A5659C", "-5799G", "-5800G", "-5801T", "-5802G", "-5803G", "-5804A", "-5805T", "-5806A", "-5807T", "-5808G", "-5809G", "-5810G", "G5812-", "T5813-", "G5814-", "G5815-", "A5816-", "T5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "C5824-", "G5825-", "T5826-", "C5827-", "T5828-", "T5829-", "A5830C", "G5832T", "T5836A", "T5837G", "G5839C", "A5840T", "G5842T", "T5844G", "A5845G", "G5853A", "A5907C", "G5948A", "T5956G", "C5998T", "T6024A", "T6025G", "G6029A", "G6073A", "A6165G", "G6170A", "C6174A", "-6175C", "T6178C", "G6179-", "A6180-", "T6181-", "C6190A", "-6194G", "-6195G", "-6198G", "-6199C", "-6202C", "G6203C", "T6204C", "-6207C", "-6211A", "-6212G", "-6213T", "-6215G", "-6216T", "-6217G", "-6218A", "-6219G", "-6220G", "-6221G", "-6222T", "-6223A", "-6224A", "-6225G", "-6227G", "-6228A", "-6229A", "-6230A", "G6267A", "G6269A", "T6271C", "G6286A", "A6311C", "A6329G", "A6335G", "T6337G", "T6340C", "C6424T", "A6443C", "T6457A", "G6463A", "C6465A", "C6477T", "A6488T", "A6489C", "A6577C", "A6584G", "A6616G", "G6638C", "A6654T", "A6664G", "C6721T", "T6722G", "A6723C", "T6724A", "G6725A", "A6728G", "C6729G", "A6780G", "A6781C", "A6785C", "C6797T", "A6799C", "G6802T", "A6805C", "T6857A", "C6858A", "A6859C", "T6883C", "C6888T", "A6889G", "T6916C", "T6928C", "G6947A", "-6956C", "-6957T", "T6973G", "A6974G", "-6977A", "-6979T", "-6980G", "-6981G", "-6982T", "-6986A", "-6987A", "-6989A", "-6990C", "-6991G", "-6992A", "-6993C", "-6994T", "-6995G", "-6996A", "-6997T", "-6998G", "-6999G", "-7000A", "-7001A", "-7002A", "-7003C", "-7004T", "-7005C", "-7006A", "C7024T", "A7040G", "A7060G", "G7065A", "C7079T", "A7147T", "T7149G", "A7151G", "A7153G", "-7162T", "G7168A", "A7171C", "A7244C", "A7255G", "G7268A", "G7285A", "A7300G", "T7334A", "G7340A", "C7344T", "C7348T", "A7375G", "A7376G", "T7403C", "A7426G", "G7428A", "C7498T", "A7533G", "T7622A", "C7625G", "G7633C", "T7642A", "T7678C", "A7688G", "G7705A", "A7711G", "A7713C", "A7721T", "A7769G", "T7801A", "T7929A", "C7932T", "G7961A", "A7964G", "A7998C", "A8006G", "A8011C", "T8032A", "A8055G", "A8080C", "A8098G", "A8102G", "C8120A", "A8194G", "T8203C", "C8213T", "A8360G", "A8388G", "G8396A", "G8402A", "A8405G", "A8413G", "G8522A", "T8558C", "G8561T", "C8651T", "A8653G", "G8678A", "C8684T", "T8843C", "A8851T", "A8906C", "T9012A", "A9042G", "C9133T"], "INT": ["I84M", "V249I", "A278D"], "RT-p51": ["T48S", "Y121H", "I135V", "I142V", "H162S", "R166K", "A286T", "D291E", "K311Q", "E344D", "A437V"], "RT-p66": ["T48S", "Y121H", "I135V", "I142V", "H162S", "R166K", "A286T", "D291E", "K311Q", "E344D", "A437V", "I452M", "R530K"], "gp120": ["K18T", "A32T", "M56I", "V57E", "E59K", "R102K", "T104R", "D105N", "-106I", "N109Y", "-111T", "-112T", "-114G", "-115S", "R138K", "D139N", "I153L", "N158K", "S160E", "S161D", "I197L", "N201K", "T204K", "T208I", "N212S", "E241D", "I244V", "E262Q", "E267V", "A291T", "T292G", "D294I", "K307E", "-308K", "K309S", "N311H", "Q315Y", "R316N", "K332Q", "S335N", "T345M", "-368I", "I396V", "R404Q", "P409S", "L432G", "-433E", "N434K", "E436D", "K464Q", "E472K"], "gp41": ["F11I", "G13S", "A14V", "I24M", "T25A", "S42N", "K77R", "S107T", "Q108E", "E110D", "D113K", "N129D", "E137A", "N140Y", "K156E", "N166K", "L209H", "T210I", "G220R", "R221G", "N232T", "I235V", "N251S", "T267A", "L273I", "R277S", "L304F", "R324S"], "nef": ["I16V", "M20I", "E24G", "Q73H", "K104R", "Q170L", "Q188H"], "p1": ["L5F"], "p17": ["E55D", "L64I", "R95K", "Q112K", "T115Q", "Q116A", "Q117K", "A118E", "K119A", "A121G"], "p24": ["S41T", "N120S", "S148A"], "p7": ["M1I", "P9S", "K10N", "K41R"], "pro": ["S12T", "R14K", "G16E", "K41R", "H63A"], "rev": ["R38Q", "K39R", "K50N", "H53R", "I55L", "S62T", "I78L", "S84G", "D85G", "T91N", "K116E"], "tat": ["R29S", "L74I", "P75S"], "vif": ["L8M", "D45E", "H127R", "P131S", "K158R", "I159R", "I166V"], "vpr": ["Y45H"], "vpu": ["V13A", "I18L", "D60E", "T61L", "E62S", "E63T", "L64M", "S65V", "T66D", "-68G", "V69R", "D70L", "M71R", "G72L", "R73L", "L74-", "R75-", "L76-", "L77-", "D78-", "V79-", "N80D"]}, "labels": {"aa": "INT: I84M, V249I, A278D; RT-p51: T48S, Y121H, I135V, I142V, H162S, R166K, A286T, D291E, K311Q, E344D, A437V; RT-p66: T48S, Y121H, I135V, I142V, H162S, R166K, A286T, D291E, K311Q, E344D, A437V, I452M, R530K; gp120: K18T, A32T, M56I, V57E, E59K, R102K, T104R, D105N, -106I, N109Y, -111T, -112T, -114G, -115S, R138K, D139N, I153L, N158K, S160E, S161D, I197L, N201K, T204K, T208I, N212S, E241D, I244V, E262Q, E267V, A291T, T292G, D294I, K307E, -308K, K309S, N311H, Q315Y, R316N, K332Q, S335N, T345M, -368I, I396V, R404Q, P409S, L432G, -433E, N434K, E436D, K464Q, E472K; gp41: F11I, G13S, A14V, I24M, T25A, S42N, K77R, S107T, Q108E, E110D, D113K, N129D, E137A, N140Y, K156E, N166K, L209H, T210I, G220R, R221G, N232T, I235V, N251S, T267A, L273I, R277S, L304F, R324S; nef: I16V, M20I, E24G, Q73H, K104R, Q170L, Q188H; p1: L5F; p17: E55D, L64I, R95K, Q112K, T115Q, Q116A, Q117K, A118E, K119A, A121G; p24: S41T, N120S, S148A; p7: M1I, P9S, K10N, K41R; pro: S12T, R14K, G16E, K41R, H63A; rev: R38Q, K39R, K50N, H53R, I55L, S62T, I78L, S84G, D85G, T91N, K116E; tat: R29S, L74I, P75S; vif: L8M, D45E, H127R, P131S, K158R, I159R, I166V; vpr: Y45H; vpu: V13A, I18L, D60E, T61L, E62S, E63T, L64M, S65V, T66D, -68G, V69R, D70L, M71R, G72L, R73L, L74-, R75-, L76-, L77-, D78-, V79-, N80D"}}}, {"name": "HM776939", "node_attrs": {"div": 0.15341000000000002, "accession": "HM776939", "clade_membership": {"value": "CRF57_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "341"}, "LANL_subtype": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C207T", "G265A", "C434T", "G495T", "G562A", "C572T", "T602C", "G607A", "G608C", "T614C", "C641T", "G644A", "A694C", "-700A", "-701A", "-703A", "-704G", "-705G", "-706C", "-707T", "-708G", "-709G", "-710C", "-711G", "-712G", "-713G", "-714A", "G740A", "C749T", "T782C", "C845T", "A938G", "A941G", "G956A", "A986C", "A1017C", "C1061T", "A1109T", "A1142G", "A1160G", "T1172C", "G1184A", "C1229T", "A1247G", "G1313A", "A1400G", "C1406T", "A1495G", "C1550T", "T1613C", "A1622G", "C1682T", "C1756T", "G1852A", "T1854C", "T1868C", "C1986A", "C2083T", "T2212G", "A2404C", "G2428A", "T2499C", "G2580A", "A2592G", "C2605T", "A2727G", "A2838T", "A2920G", "C2968T", "G2972A", "C3023A", "A3027G", "G3070A", "A3096G", "C3100T", "C3207T", "A3259G", "T3266C", "C3399T", "A3448G", "G3491A", "A3571G", "A3681C", "G3685A", "C3727T", "T3820C", "T3970C", "A4114C", "A4181C", "A4189C", "A4270G", "G4294A", "G4549A", "T4652C", "C4667T", "A4684G", "T4691C", "T4703G", "C4728A", "T4761G", "G4774A", "G4802A", "G4859A", "A4869C", "G4888A", "G5045A", "T5147C", "G5176A", "A5272G", "C5281T", "A5290G", "C5306A", "A5432C", "G5462T", "A5538G", "A5621G", "A5664C", "G5668A", "A5702G", "A5718G", "A5734G", "T5788C", "C5827A", "C5878T", "A5906C", "A6022G", "C6039T", "T6046A", "A6059G", "T6101C", "G6133A", "A6159G", "A6164G", "A6166G", "A6167G", "A6173C", "-6175G", "A6177T", "G6179A", "C6183-", "T6184-", "A6185-", "C6186-", "T6187-", "A6188-", "C6189-", "C6190-", "A6191-", "A6192-", "T6193-", "T6196-", "A6197-", "-6202A", "T6205G", "-6207G", "A6209C", "T6210G", "-6211G", "-6212A", "-6213A", "A6234G", "T6250C", "T6263A", "A6273G", "T6285A", "T6287C", "A6292T", "T6312C", "C6317T", "A6326G", "T6331C", "A6332T", "G6333C", "G6345T", "G6392A", "G6451A", "T6454C", "A6488C", "A6573G", "A6576G", "T6582G", "C6607T", "A6648C", "A6649T", "A6734C", "T6735A", "C6758T", "G6771A", "G6773A", "A6776G", "A6780C", "A6786C", "G6788A", "A6801G", "A6809G", "A6814G", "G6818A", "C6819A", "A6849G", "A6854G", "A6865T", "T6958-", "G6963A", "T6964A", "T6968A", "A6969G", "C6970T", "C6975A", "-6977T", "A6978C", "-6979A", "-6980A", "-6981C", "-6982C", "A6983T", "A6985G", "T6988-", "G7026A", "G7055A", "A7107G", "T7134A", "G7145A", "T7149A", "A7150T", "A7153T", "A7154G", "A7156T", "-7162G", "G7197A", "G7199A", "A7237G", "A7269C", "T7321G", "C7328T", "A7351G", "G7366A", "A7502G", "A7620G", "A7626T", "T7630C", "A7641G", "A7680C", "C7684T", "A7722G", "A7782G", "C7939G", "T8058C", "T8097C", "G8170A", "T8174G", "T8205C", "C8220G", "G8231A", "A8273C", "C8406A", "C8460T", "G8738A", "C8791A", "A8793G", "A8815G", "C8904T", "A8905T", "A8909G", "A8914G", "-8970A", "-8971G", "-8972T", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A", "G8997A"], "INT": ["K136Q", "E138D"], "RT-p51": ["D39E", "K103N", "I135T", "K211R", "E248V", "V293I", "L310I", "K311R", "Q334R", "A371V", "A435V"], "RT-p66": ["D39E", "K103N", "I135T", "K211R", "E248V", "V293I", "L310I", "K311R", "Q334R", "A371V", "A435V", "V466I", "E529A"], "gp120": ["K18Q", "E34D", "T62I", "N64K", "K69E", "T104E", "-106V", "-107P", "N108F", "N113-", "E125-", "I126-", "K127-", "L137I", "K140R", "V144E", "Y145H", "I153T", "P155S", "N158E", "E159N", "S162N", "R164I", "V180I", "N212H", "E240G", "E241G", "I243R", "E265A", "D294Q", "H302Y", "S306N", "-308E", "K309T", "N311T", "E312K", "K319E", "A322K", "K332R", "T334A", "S365G", "-368N", "-372S", "-385T", "R391K", "E401K", "K418R", "V427E", "G431R", "-433D", "R448K", "D449N", "E472A"], "gp41": ["L9F", "T67A", "K106R", "Q108L", "D113S", "N126T", "E137D", "N140S", "N160S", "N212K", "L252P", "L265S", "Y291D", "I301T", "T306S", "A310T"], "nef": ["H40Y", "P150Q", "R151G", "E158G", "Q188L", "H191R"], "p17": ["A54S", "R76K", "G91D", "D120A", "-123E", "-124A", "-125G", "-126G", "-127K"], "p24": ["M96L"], "p6": ["P26L"], "p7": ["K10R"], "pro": ["I19T"], "rev": ["N8S", "P31A", "A108T", "V109G"], "tat": ["E19A", "R29L", "T77S"], "vif": ["K33R", "F39L", "H48N", "L59V", "R63K", "N95H", "G101D"], "vpr": ["Y15H", "L68M"], "vpu": ["V21I", "K32R", "I43V", "L74I"]}, "labels": {"aa": "INT: K136Q, E138D; RT-p51: D39E, K103N, I135T, K211R, E248V, V293I, L310I, K311R, Q334R, A371V, A435V; RT-p66: D39E, K103N, I135T, K211R, E248V, V293I, L310I, K311R, Q334R, A371V, A435V, V466I, E529A; gp120: K18Q, E34D, T62I, N64K, K69E, T104E, -106V, -107P, N108F, N113-, E125-, I126-, K127-, L137I, K140R, V144E, Y145H, I153T, P155S, N158E, E159N, S162N, R164I, V180I, N212H, E240G, E241G, I243R, E265A, D294Q, H302Y, S306N, -308E, K309T, N311T, E312K, K319E, A322K, K332R, T334A, S365G, -368N, -372S, -385T, R391K, E401K, K418R, V427E, G431R, -433D, R448K, D449N, E472A; gp41: L9F, T67A, K106R, Q108L, D113S, N126T, E137D, N140S, N160S, N212K, L252P, L265S, Y291D, I301T, T306S, A310T; nef: H40Y, P150Q, R151G, E158G, Q188L, H191R; p17: A54S, R76K, G91D, D120A, -123E, -124A, -125G, -126G, -127K; p24: M96L; p6: P26L; p7: K10R; pro: I19T; rev: N8S, P31A, A108T, V109G; tat: E19A, R29L, T77S; vif: K33R, F39L, H48N, L59V, R63K, N95H, G101D; vpr: Y15H, L68M; vpu: V21I, K32R, I43V, L74I"}}}]}, {"name": "CRF57_BC_NODE_0000005", "node_attrs": {"div": 0.12888, "clade_membership": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G495T", "A518G", "C688A", "A1400G", "C1615A", "A1622G", "A1642G", "C1644T", "C1986A", "A2002G", "G2951A", "T3045C", "G3385A", "G4006A", "T5237C", "C5472T", "C5600T", "G5614A", "T5617A", "T5622A", "C5630G", "A5718G", "G5862A", "A6167G", "A6177G", "A6282C", "G6323A", "T6340C", "G6653A", "A6655C", "C6766T", "G6773A", "-6986A", "-6987C", "-6990A", "-6991T", "-6992A", "-6996C", "-6997A", "A7094G", "C7096A", "-7162A", "T7170C", "A7532C", "G7734A", "G7790A", "T7801A", "G7918A", "G8421A"], "RT-p51": ["A286T", "V317A"], "RT-p66": ["A286T", "V317A"], "gp120": ["K143T", "E159S", "E267N", "N414E", "I439T"], "gp41": ["K77Q", "N166K", "R324S"], "nef": ["A27T"], "p1": ["K4R", "L5F"], "p17": ["A54S", "I61M"], "p7": ["T50N"], "vpr": ["Y45H"]}, "labels": {"aa": "RT-p51: A286T, V317A; RT-p66: A286T, V317A; gp120: K143T, E159S, E267N, N414E, I439T; gp41: K77Q, N166K, R324S; nef: A27T; p1: K4R, L5F; p17: A54S, I61M; p7: T50N; vpr: Y45H"}}, "children": [{"name": "KF250400", "node_attrs": {"div": 0.15539, "accession": "KF250400", "clade_membership": {"value": "CRF57_BC"}, "country": {"value": "CN"}, "date": {"value": 2010.0}, "Strain_name": {"value": "DH17"}, "LANL_subtype": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C207T", "G224A", "A256G", "G265A", "A388G", "C435T", "T539C", "G562A", "G607A", "A656G", "T667G", "G687A", "A694C", "C697A", "G698C", "A699-", "-701G", "-703G", "-704A", "T852A", "C902T", "T992G", "T1003A", "A1017T", "G1019A", "C1061T", "G1077A", "G1078C", "G1192A", "A1199T", "T1262C", "A1319G", "A1349G", "C1350T", "C1362T", "A1464T", "G1543A", "T1646C", "-1729T", "-1730C", "-1731G", "-1732A", "-1733G", "T1735-", "C1736-", "G1740A", "A1741C", "G1742A", "A1743-", "C1744-", "A1745-", "A1746-", "C1747-", "C1748-", "C1749-", "C1750-", "A1751-", "C1768T", "T1888C", "A2023G", "C2083T", "A2161G", "T2212G", "A2551G", "C2575T", "G2580A", "A2592G", "C2605T", "A2611G", "A2626C", "G2656A", "C2828A", "G2842A", "T2845G", "A2881G", "C2968A", "G3004A", "G3015A", "T3049C", "C3121T", "G3214A", "G3264A", "A3478G", "G3487A", "T3544C", "T3778C", "T3793C", "G3816A", "T3820C", "C3850T", "C3946T", "C3962T", 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P207S; p6: T23A, A25-, P26-, P30L; p7: R26K; rev: I55L, I59V, H82N, S100P, K105E, T114I; tat: Q17R, L74I; vif: D45E, G101D, R181T; vpr: Q8H, E48D, I63T; vpu: M1R, -2V, -3N, -4R, -5L"}}}, {"name": "KC870044", "node_attrs": {"div": 0.1585, "accession": "KC870044", "clade_membership": {"value": "CRF57_BC"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "YNFL37"}, "LANL_subtype": {"value": "CRF57_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G263A", "A286G", "A398G", "G438A", "G491A", "A492T", "A507C", "A508G", "A527G", "T571A", "A585T", "G615A", "A645G", "C684A", "G686A", "A689G", "A691C", "G692T", "T695C", "C697G", "G702-", "G1070A", "C1209T", "G1301A", "A1359T", "A1442G", "C1490T", "A1500G", "A1772G", "C1790T", "C1849T", "G2167A", "A2230G", "A2300G", "A2386G", "A2414T", "T2527C", "C2579T", "G2602A", "G2630A", "C2665T", "T2689C", "G2704A", "G2705A", "T2723C", "T2770C", "A2809G", "A3043G", "G3091A", "T3221G", "C3330G", "A3390G", "G3491A", "T3541C", 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G214E, P216L, E225G, K231N, D247E, H258R, R259Q, R277S, I301T, T306I, I307T, C323R, S324N, I325F, C326W; nef: T23A, E24R, P25S, V74M, K92R, R151K, D161N, K182M, Q188H; p17: V35I, T53S, K58R, F79Y, T84S, V94I, I104V, Q117K, A118E, K119A, A121G, -122K; p24: P160S, T210S; p7: I12V; rev: R14G, K50Q, A68T, L73F, S92A, T114A; tat: S31C, V36A, Q39H, Q60R, G79R, P81S; vif: K33R, R34G, Q73H, T74P, Q105E, I166V, R184K; vpr: S4P, Y15H, S41N, I60L, I61L, L84W; vpu: -6I, -7V, -8M, -9I, V10E, I18L, A19T, V21L, T24I, S53N, G72E, R73H, D81E"}}}]}]}]}]}]}]}, {"name": "NODE_0000381", "node_attrs": {"div": 0.10196, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A699-", "T1001A", "G1109A", "G1142A", "A1450G", "G1839A", "G2578A", "C2605T", "C2613A", "T2644C", "A2686G", "T2708C", "A2710G", "A3442G", "G3816A", "T5355G", "T5579C", "A6261T", "A6335-", "G6336C", "A6734G", "A7151-", "T7630A", "A8080C", "A8540G", "C8651T", "T9132G"], "INT": ["R14K"], "RT-p51": ["A173K"], 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"S41T", "A116G", "V124I", "D128E"], "p6": ["K42R", "N47S"], "pro": ["D60E", "L89M"], "rev": ["S84T", "S88G"], "tat": ["P81Q"], "vif": ["V31I", "R93S", "K158R"], "vpr": ["I46V", "A59T"], "vpu": ["-3D", "-5A", "-6L", "V10G"]}, "labels": {"aa": "INT: I201V, K211R, T218I; RT-p51: E53D, Y121D, E122K, I135V, A286T, V317A, T386I; RT-p66: E53D, Y121D, E122K, I135V, A286T, V317A, T386I; gp120: Q142K, N159D; gp41: I4L, E137D, V266L, V270G, L304F, E320N, V321I, L330R; nef: M168V; p17: D93E; p2: -12T; p24: I15L, S41T, A116G, V124I, D128E; p6: K42R, N47S; pro: D60E, L89M; rev: S84T, S88G; tat: P81Q; vif: V31I, R93S, K158R; vpr: I46V, A59T; vpu: -3D, -5A, -6L, V10G", "clade": "CRF08_BC"}}, "children": [{"name": "CRF08_BC_NODE_0000001", "node_attrs": {"div": 0.1198, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T424G", "A548G", "G1004A", "G1622A", "A1766G", "A1879G", "G2182A", "C2596T", "T2770C", "G2951A", "A2969G", "T3040G", "A3491G", "T3799C", "T4135C", 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RT-p66: D123E, I292V, H315Q; gp120: V2G, G4E, -110T, -111N, V144E, I153V, V267T, S335P, -373S, I463V, V468I, E472K; gp41: L4-, T165S, T208I, K231R, F263L, R277S, F304I, A312G, F340L; nef: T23A; p17: M30R; rev: E30K, R50K, H82N, *101Q; tat: N12K, K19A, P73S, R76Q"}}, "children": [{"name": "KU820840", "node_attrs": {"div": 0.15859, "accession": "KU820840", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "MM"}, "date": {"value": 2013.0}, "Strain_name": {"value": "mSSDU220"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C482A", "G491A", "G498A", "A507C", "A518G", "A578T", "C583T", "A584G", "G607A", "A614C", "A645G", "A666T", "-699A", "-700C", "G740A", "A797G", "T851C", "G980A", "A1001G", "A1007G", "T1061A", "T1100C", "C1103T", "A1259G", "G1313A", "T1335C", "C1439T", "A1442G", "G1450A", "T1482G", "G1543A", "A1580G", "T1613C", "A1644C", "T1646G", "T1681C", "C1693T", "T1722C", "G1727A", "C1790T", "G1841A", "A1857G", "C2087T", "C2199A", 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"A7998G", "C8005G", "A8019G", "A8055G", "G8105A", "G8133C", "G8158A", "T8184A", "G8185A", "T8203A", "C8221A", "T8239A", "A8261G", "C8291T", "A8303G", "G8304T", "G8317A", "T8323G", "C8328T", "G8330A", "C8331T", "C8406A", "T8426G", "G8453A", "T8492C", "G8528A", "G8531T", "C8606T", "T8651C"], "INT": ["M84I", "A125T", "K160R", "R187K", "K188R"], "RT-p51": ["T35K", "A36E", "K49R", "D324E", "K366R", "I382V", "E399D", "A435V"], "RT-p66": ["T35K", "A36E", "K49R", "D324E", "K366R", "I382V", "E399D", "A435V", "Y483H", "L517I", "K527R"], "gp120": ["N1S", "V10I", "K18R", "E19D", "D29E", "V57E", "E102N", "-105D", "-106V", "-107K", "-109G", "-112T", "-114N", "-115S", "-116T", "-117S", "-118T", "-119H", "-120N", "-121W", "-122M", "-123K", "-124D", "A133T", "L137V", "R138T", "K140R", "N160G", "S161N", "T191A", "A196V", "P210Q", "I243V", "T267N", "I279V", "D294E", "H302Y", "E307G", "-308D", "K309Q", "S318A", "H324L", "P326K", "N327T", "K332V", "A334K", "S336H", "G361K", "G365R", "-368M", "-370T", "-372N", "-374S", "-375D", "-384D", "-385N", "I388L", "I396V", "K418R", "N432T", "G443E", "D449N", "T471S"], "gp41": ["G3A", "V7M", "G13S", "A14L", "I24V", "Q39H", "Q40S", "Q41K", "S42H", "N43-", "K77Q", "D78E", "A96V", "Q108Y", "D113K", "T128S", "N140I", "K144Q", "K156D", "N157S", "D163S", "N166K", "D232S", "N239S", "N251S", "A268T", "S277N", "L294Q", "N320D", "R330C", "R334V", "A342I", "A343I"], "nef": ["D28E", "E63D"], "p1": ["I5L"], "p17": ["E55K", "K58Q", "I61M", "A83V", "G91E", "E93D", "I104V", "I111F"], "p2": ["-7T", "T8N", "S10-"], "p6": ["L1P", "P5L", "F15L"], "p7": ["F6V", "R26K"], "pro": ["V15I", "K20R"], "rev": ["R17K", "I21V", "H53D", "S86N", "G104R", "G113R"], "tat": ["A58T", "N67S", "L68P"], "vif": ["K17R", "K33R", "A35T", "K36N", "D45E", "H48N", "L59V", "Y111H", "I130F", "G185E"], "vpr": ["Y15H", "T49N", "A89T"], "vpu": ["A5V", "A19V", "V21I", "Y27L", "L33V", "V34I", "L82I"]}, "labels": {"aa": "INT: M84I, A125T, K160R, R187K, K188R; RT-p51: T35K, A36E, K49R, D324E, K366R, I382V, E399D, A435V; RT-p66: T35K, A36E, K49R, D324E, K366R, I382V, E399D, A435V, Y483H, L517I, K527R; gp120: N1S, V10I, K18R, E19D, D29E, V57E, E102N, -105D, -106V, -107K, -109G, -112T, -114N, -115S, -116T, -117S, -118T, -119H, -120N, -121W, -122M, -123K, -124D, A133T, L137V, R138T, K140R, N160G, S161N, T191A, A196V, P210Q, I243V, T267N, I279V, D294E, H302Y, E307G, -308D, K309Q, S318A, H324L, P326K, N327T, K332V, A334K, S336H, G361K, G365R, -368M, -370T, -372N, -374S, -375D, -384D, -385N, I388L, I396V, K418R, N432T, G443E, D449N, T471S; gp41: G3A, V7M, G13S, A14L, I24V, Q39H, Q40S, Q41K, S42H, N43-, K77Q, D78E, A96V, Q108Y, D113K, T128S, N140I, K144Q, K156D, N157S, D163S, N166K, D232S, N239S, N251S, A268T, S277N, L294Q, N320D, R330C, R334V, A342I, A343I; nef: D28E, E63D; p1: I5L; p17: E55K, K58Q, I61M, A83V, G91E, E93D, I104V, I111F; p2: -7T, T8N, S10-; p6: L1P, P5L, F15L; p7: F6V, R26K; pro: V15I, K20R; rev: R17K, I21V, H53D, S86N, G104R, G113R; tat: A58T, N67S, L68P; vif: K17R, K33R, A35T, K36N, D45E, H48N, L59V, Y111H, I130F, G185E; vpr: Y15H, T49N, A89T; vpu: A5V, A19V, V21I, Y27L, L33V, V34I, L82I"}}}, {"name": "KU820846", "node_attrs": {"div": 0.15647, "accession": "KU820846", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "MM"}, "date": {"value": 2013.0}, "Strain_name": {"value": "mSSDU91"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G367A", "A379G", "T396C", "C419A", "T467C", "C482T", "T495G", "C525T", "C604A", "C623T", "C635T", "T662G", "G686A", "G687A", "C688A", "A690G", "A692G", "A694C", "G695T", "C697A", "T698C", "C774A", "A815G", "A887G", "G1002A", "A1034G", "A1089G", "C1098G", "C1099T", "A1115T", "T1172C", "C1174G", "A1307G", "G1388A", "G1430A", "A1458G", "C1679T", "C1706T", "C1721T", "A1781G", "G1804A", "A1835G", "C1960T", "A2059G", "T2062C", "C2083T", "A2131G", "A2154G", "A2164G", "C2254A", "T2323C", "A2344G", "A2350G", "A2362G", "A2459G", "C2464A", "C2575T", "G2602A", "G2710A", "C2828G", "C2848T", "G2869A", "T2905C", "G2950A", "C2968G", "A3001G", "T3002C", "A3010G", "C3013T", "T3049C", "A3067C", "A3103G", "A3127C", "A3241C", "A3251G", "A3271G", "G3385A", "A3449C", "G3454A", "G3487C", "A3611C", "T3644C", "T3649A", "A3674C", "A3676G", "G3685A", "T3721A", "A3814G", "A3816G", "G3952A", "A3973G", "G4109A", "T4110C", "C4138T", "A4178G", "G4263T", "G4376A", "T4428A", "A4433G", "T4534C", "C4576T", "G4607A", "A4625G", "T4640C", "G4687A", "T4694G", "T4701C", "C4757T", "G4769A", "G4774A", "G4779A", "G4799A", "G4829A", "G4859A", "G4864A", "A4870G", "C4902A", "A4904G", "G4953A", "A4968G", "A5021C", "A5049G", "T5084C", "A5090G", "C5114A", "A5143G", "A5164T", "C5197T", "G5240A", "A5279G", "A5284C", "A5291G", "G5336T", "C5351T", "G5355A", "G5363A", "A5372G", "C5412A", "A5453T", "C5461A", "A5495G", "C5513T", "G5523A", "G5534A", "G5556A", "A5575G", "C5579T", "C5600-", "-5603A", "T5612C", "T5616A", "-5621C", "-5626G", "-5628A", "G5629-", "C5630-", "A5631-", "G5636T", "A5640C", 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I386V, I452L, K464N, I506L, K527Q; gp120: G3T, N5K, A32S, E34S, N52S, V57L, L58M, -109E, -112Q, N113-, V136E, K141M, -157S, D159E, N160S, T174A, T181S, N202E, T204K, A238V, E239K, E240D, R245S, A253V, -308G, R316M, A322K, P326H, N327G, K332Q, A334S, R351G, -368N, -370G, -372E, -374N, -383S, -384S, -385L, E401K, A412Q, -433Q, N434T, T436D, T439I, D446N, R448K, L466V; gp41: V2A, G3L, T67A, S101V, S107N, Q108L, D109T, M118L, S125D, R133Q, K147Q, K156Q, D163N, L191I, I193V, R198G, P209L, G214E, D217G, R221G, E225K, D232N, C253S, S256L, R259H, T267I, A281T, Q323L, C326G, A342K; nef: G3N, V33A, K39R, R71K, F81Y; p17: G11E, K15R, H28Q, S54A, A90E, N109K, A118K, E120A, A121D; p2: -11A, T12-; p24: L15I, V91I, S120G, P123V, E128D, T148S; p6: R42K; pro: I13V; rev: G3E, D7N, R14K, R32G, K39R, R43K, I55L, V71E, Q74P, G96R, S99N, A108S, A114T; tat: Y26F, R29S, K40R, S46F, R53K, N67D, Q78R, G79R, T82A; vif: R34K, F39L, R63K, V65I, S93N, N95S, L106M, A123T, I128V, K155E, N176K, N186S, *193L; vpr: P4T, V46I, T59A, I63V, Q77H, V84M; vpu: L2S, D3E, -7V, A8-, G10V, L12F, I13V, L16S, V34K, R37E, D40N, W41R, E58D, R73H, R75G, D78G"}}}]}, {"name": "CRF08_BC_NODE_0000002", "node_attrs": {"div": 0.11501, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G2693A", "-5621A", "T5627-", "-6167A", "-6174A", "-6175C", "A6488C", "C6857T", "-6967A", "-6971A", "T7150G", "-7152C", "A8273G"], "RT-p51": ["A200T"], "RT-p66": ["A200T", "V466I"], "gp120": ["N212H"], "gp41": ["M54L", "R324G"], "p17": ["-122E"], "vpu": ["I9V"]}, "labels": {"aa": "RT-p51: A200T; RT-p66: A200T, V466I; gp120: N212H; gp41: M54L, R324G; p17: -122E; vpu: I9V"}}, "children": [{"name": "CRF08_BC_NODE_0000003", "node_attrs": {"div": 0.11646000000000001, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T571A", "-699A", "-700C", "G1543A", "T2579A", "C5479T", "G5548A", "A6026C", "G6029A", "-6165G", "A6177G", "G6179A", "T6181A", "A6458G", "-6969A", "-6970A", "-6973T", "A7148G", "-7153A", "G7628A", "A7629C", "T7876C", "A7997G", "T8440C", "G8531T"], "RT-p51": ["C162S"], "RT-p66": ["C162S"], "gp120": ["E59K", "N202D"], "gp41": ["D109T"], "nef": ["V33A", "E63D"], "p17": ["F79Y"], "p7": ["R26K"], "tat": ["A58T"]}, "labels": {"aa": "RT-p51: C162S; RT-p66: C162S; gp120: E59K, N202D; gp41: D109T; nef: V33A, E63D; p17: F79Y; p7: R26K; tat: A58T"}}, "children": [{"name": "CRF08_BC_NODE_0000004", "node_attrs": {"div": 0.11971000000000001, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G687A", "G989A", "A1495G", "T1754C", "G1819A", "C1873T", "C2626A", "G4687A", "G5059A", "A5718G", "A5825G", "A6185G", "-6198G", "-6204A", "-6205C", "-6206A", "-6208T", "-6209G", "-6210T", "-6211G", "-6212A", "-6215A", "-6217G", "-6219A", "-6222A", "-6225G", "G6451A", "C6488A", "G6572A", "A6779C", "A6854G", "T6958-", "-6978C", "-6979A", "-6987A", "-6991A", "-6992A", "A7161G", "A7626T", "T7801A", "T7921G", "C7932T", "G7961A", "A7964G", "A8458G", "A8804G", "-8994G", "C9006G"], "RT-p51": ["D177E"], "RT-p66": ["D177E"], "gp120": ["-114V", "-115S", "E240K", "-308E"], "gp41": ["Q108L", "N166K", "F206L", "T210I", "G220R", "R221G"], "nef": ["K39R"], "p6": ["K31-", "D32-", "R33K", "S47N"], "p7": ["K10R"], "rev": ["R38Q", "K39R", "G88R"], "tat": ["K19E", "P75S"], "vif": ["R34K", "K36N", "R158K"]}, "labels": {"aa": "RT-p51: D177E; RT-p66: D177E; gp120: -114V, -115S, E240K, -308E; gp41: Q108L, N166K, F206L, T210I, G220R, R221G; nef: K39R; p6: K31-, D32-, R33K, S47N; p7: K10R; rev: R38Q, K39R, G88R; tat: K19E, P75S; vif: R34K, K36N, R158K"}}, "children": [{"name": "KF835530", "node_attrs": {"div": 0.14450000000000002, "accession": "KF835530", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN346"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A180T", "-281C", "A301G", "C417A", "A418G", "C419A", "C434T", "T485G", "G491A", 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"A7583C", "G7589A", "C7629A", "A7630T", "A7700G", "G7701A", "G7702A", "A7710C", "A7722T", "A7771G", "A7777C", "T7796A", "A7819G", "C7876A", "A7998G", "A8019G", "T8071C", "A8095C", "G8105C", "C8106T", "G8168A", "G8170A", "G8188A", "G8201A", "A8276G", "T8323G", "G8330A", "A8342C", "A8413G", "A8489T", "C8491A", "T8492C", "T8507C", "G8537A", "T8675C", "C8699A", "G8739A", "C8775T", "G8794A", "C8809A", "C8813T", "C8835T", "G8844A", "C8957T", "-8993G", "C9004T", "A9005G", "A9009C", "G9011T", "T9012C", "G9013C", "T9014A", "T9017A", "C9018G", "T9019G", "G9020T", "T9029-", "-9033G", "C9078T", "A9082T"], "INT": ["L74M", "G134N", "Q136R", "F181L", "D286N"], "RT-p51": ["D39E", "D123E", "K275R", "T286A", "P294S", "A317T", "D324E", "Q334H", "P345A", "M377L", "A435P"], "RT-p66": ["D39E", "D123E", "K275R", "T286A", "P294S", "A317T", "D324E", "Q334H", "P345A", "M377L", "A435P", "I452A", "I466V"], "gp120": ["N1K", "V2G", "T35R", "I56M", "K59Q", "-105D", "-106V", "-107N", "-109S", "-110S", "-111A", "-112Y", "-119M", "-120E", "-121E", "-122S", "-123M", "-124E", "E125V", "I126M", "A133T", "V136I", "K143T", "V144E", "Y145F", "L151S", "N160K", "S161N", "Y163S", "R164K", "L165N", "I166S", "N167S", "T181S", "H212N", "E262Q", "N272H", "D294E", "D297N", "E307A", "K309H", "S318G", "K319S", "K332I", "S335P", "T345M", "N369-", "T371-", "I386-", "A412E", "-433T", "N434T", "N435G", "T436N", "T437-", "G443E", "E472G"], "gp41": ["V2A", "G3L", "L4-", "V7M", "A14V", "T94P", "A96T", "T109N", "R133E", "E136A", "N140I", "D232G", "N239S", "A268L", "V289I", "A300T", "I325V", "F340L", "A343T"], "nef": ["E24G", "A50D", "V133I", "R151K", "A156D", "V168I"], "p17": ["H28R", "S54A", "G91E", "E93Q"], "p2": ["M14L"], "p24": ["V91I", "T110N", "S120N"], "p6": ["S14G", "Q28R", "P30Q", "-35R", "-36E"], "p7": ["P9S"], "pro": ["I36V"], "rev": ["I83L", "S86T", "C107Y", "A108T", "A114T"], "tat": ["N12K", "N23T", "Y32F", "L68P", "S70P"], "vif": ["I31V", "K33R", "F39L", "L59V", "R63K", "R181K", "T188S"], "vpr": ["Y15F", "I63M"], "vpu": ["A5E", "K35R", "R37K", "D81N"]}, "labels": {"aa": "INT: L74M, G134N, Q136R, F181L, D286N; RT-p51: D39E, D123E, K275R, T286A, P294S, A317T, D324E, Q334H, P345A, M377L, A435P; RT-p66: D39E, D123E, K275R, T286A, P294S, A317T, D324E, Q334H, P345A, M377L, A435P, I452A, I466V; gp120: N1K, V2G, T35R, I56M, K59Q, -105D, -106V, -107N, -109S, -110S, -111A, -112Y, -119M, -120E, -121E, -122S, -123M, -124E, E125V, I126M, A133T, V136I, K143T, V144E, Y145F, L151S, N160K, S161N, Y163S, R164K, L165N, I166S, N167S, T181S, H212N, E262Q, N272H, D294E, D297N, E307A, K309H, S318G, K319S, K332I, S335P, T345M, N369-, T371-, I386-, A412E, -433T, N434T, N435G, T436N, T437-, G443E, E472G; gp41: V2A, G3L, L4-, V7M, A14V, T94P, A96T, T109N, R133E, E136A, N140I, D232G, N239S, A268L, V289I, A300T, I325V, F340L, A343T; nef: E24G, A50D, V133I, R151K, A156D, V168I; p17: H28R, S54A, G91E, E93Q; p2: M14L; p24: V91I, T110N, S120N; p6: S14G, Q28R, P30Q, -35R, -36E; p7: P9S; pro: I36V; rev: I83L, S86T, C107Y, A108T, A114T; tat: N12K, N23T, Y32F, L68P, S70P; vif: I31V, K33R, F39L, L59V, R63K, R181K, T188S; vpr: Y15F, I63M; vpu: A5E, K35R, R37K, D81N"}}}, {"name": "KF835496", "node_attrs": {"div": 0.14677, "accession": "KF835496", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN307"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "A214G", "G224A", "C264T", "-280G", "T305A", "A374G", "A530C", "C540A", "T567C", "A599G", "C747A", "G818A", "T858C", "T953C", "T992G", "G1005C", "A1010C", "T1061C", "A1101G", "A1259G", "A1443-", "C1444-", "A1445-", "A1447C", "C1448A", "G1450A", "-1455G", "-1456G", "-1457T", "G1498A", "G1568A", "A1709G", "A1772G", "A2038G", "C2071T", "C2083T", "C2105A", "A2113G", "G2117A", "G2155A", "G2182A", "A2223G", "A2260C", "G2294A", "A2304G", "A2314G", "A2406G", "T2412C", "T2440C", "C2488A", "G2498A", "T2527C", "G2539A", "A2614G", "A2627C", "A2645G", "G2702A", "G2710A", "C2749A", "A2750C", "G2761A", "T2774C", "A2809G", "G2951A", "A2969G", "C2975A", "T2996C", "C3045T", "A3067T", "C3095A", "G3097T", "G3151A", "G3214A", "A3217G", "G3250A", "G3292A", "T3328C", "T3346C", "G3398A", "G3442A", "T3469C", "C3499G", "G3532A", "C3610T", "T3649C", "A3676C", "G3684A", "A3718C", "G3766A", "T3977C", "G3997A", "G4046T", "G4148A", "T4153C", "T4412C", "T4428C", "A4498G", "A4581G", "A4650C", "T4676C", "T4701G", "C4752T", "T4820G", "T4832C", "G4859A", "A4860G", "A5024G", "C5043T", "T5062G", "A5082G", "A5085G", "A5086T", "C5162T", "A5325T", "G5336A", "C5342T", "C5412T", "G5437C", "C5442T", "T5479A", "A5495C", "T5515A", "A5575G", "C5579T", "A5621C", "A5640T", "G5643A", "G5668A", "T5745C", "A5793C", "A5911T", "T5920C", "T5980C", "G6074A", "G6092A", "T6101C", "C6110G", "T6155C", "A6174G", "G6177T", "A6180G", "T6186G", "A6189G", "A6192G", "-6195A", "A6197G", "-6200A", "-6201A", "-6202T", "-6203G", "-6207G", "-6213C", "-6214A", "-6216A", "-6218C", "-6220T", "-6221A", "-6223A", "-6224G", "-6226A", "G6227-", "A6228-", "T6263A", "A6275C", "G6280T", "T6287G", "A6323G", "A6330G", "G6392A", "A6395G", "C6396A", "C6424T", "A6425T", "G6442A", "A6443C", "C6483A", "A6489G", "A6502G", "A6609C", "C6612T", "G6647C", "A6659G", "T6676C", "A6728G", "T6778A", "G6799T", "G6801T", "G6818T", "T6838C", "A6848C", "T6857A", "C6858A", "A6859T", "T6860G", "G6871A", "T6928C", "G6935C", "-6968C", "A6971G", "-6972G", "C6975A", "-6977T", "-6980A", "-6981G", "-6982C", "-6983T", "-6986A", "-6988C", "-6989T", "-6990C", "-6993C", "-6994C", "C7079T", "A7144G", "-7151G", "C7152G", "-7156C", "C7170T", "A7244G", "G7268A", "G7271T", "A7315G", "G7477A", "G7492A", "G7552A", "A7628C", "G7657A", "C7714G", "A7735T", "A7771C", "G7790A", "A7791G", "A7953G", "G7965A", "A8011C", "T8091G", "T8097C", "T8164C", "G8185A", "T8203C", "G8212A", "T8213G", "G8231A", "C8238G", "A8258C", "G8273A", "T8298C", "G8330T", "G8335A", "A8337T", "A8338G", "T8366G", "G8373C", "T8374C", "T8375A", "G8407A", "C8415A", "C8416G", "T8584A", "T8651C", "T8756C", "T8758A", "T8786C", "G8795T", "C8809T", "A8827G", "G8880A", "G8902T", "G8917A", "A8922T", "C9075T"], "INT": ["A91S", "A125T", "I218T", "K269R"], "RT-p51": ["P4T", "V8I", "K43R", "D67N", "K70R", "K104R", "V106A", "V135I", "I178L", "M184V", "E203K", "D218E", "K219Q", "F227L", "I292V", "P294T", "A317V", "Q334N", "A435T"], "RT-p66": ["P4T", "V8I", "K43R", "D67N", "K70R", "K104R", "V106A", "V135I", "I178L", "M184V", "E203K", "D218E", "K219Q", "F227L", "I292V", "P294T", "A317V", "Q334N", "A435T", "K527N", "R530K"], "gp120": ["E19D", "D74N", "V80I", "Q86E", "T104R", "N108-", "-116S", "-117V", "-118T", "-119Y", "-120D", "E125-", "L137I", "K141Q", "K142N", "Y145D", "-157D", "N158D", "D159R", "V180I", "T181D", "T191S", "I197L", "P210Q", "H212S", "N252T", "A253V", "E265Q", "T269A", "T292A", "K309Q", "Q315H", "R316M", "A322S", "K332Q", "S335N", "S336A", "G361R", "-368N", "-370S", "P409S", "N432E", "-433G", "T436G", "T439I", "K464E", "E472K", "A473S"], "gp41": ["T109P", "M118I", "D137E", "K144N", "K156N", "D163S", "T165S", "D217G", "G221E", "F263C", "L265S", "F304V", "A310T", "A312G", "I319L", "G324R", "I332T", "A343S", "Q345L"], "nef": ["S8R", "V11P", "R22Q", "P25R", "F81Y", "F139Y", "R151S", "A156V", "N162S", "V180I", "S187I", "R192K", "R194W"], "p17": ["Q65H", "Q69K", "A118T"], "p2": ["-7T", "T8N", "N9G", "S10-"], "p24": ["L6I", "H87Q", "A92P", "I124V"], "p6": ["-35G", "-36P"], "p7": ["R11K"], "rev": ["I55L", "Q95L", "S106P", "G113R"], "tat": ["A21P", "L35I", "K40T", "Y47N", "N67D", "T82A", "E86K"], "vif": ["N22H", "F39V", "H56Y", "D78E", "R92G", "I159R", "I166V", "K167V"], "vpr": ["I74F"], "vpu": ["V21I"]}, "labels": {"aa": "INT: A91S, A125T, I218T, K269R; RT-p51: P4T, V8I, K43R, D67N, K70R, K104R, V106A, V135I, I178L, M184V, E203K, D218E, K219Q, F227L, I292V, P294T, A317V, Q334N, A435T; RT-p66: P4T, V8I, K43R, D67N, K70R, K104R, V106A, V135I, I178L, M184V, E203K, D218E, K219Q, F227L, I292V, P294T, A317V, Q334N, A435T, K527N, R530K; gp120: E19D, D74N, V80I, Q86E, T104R, N108-, -116S, -117V, -118T, -119Y, -120D, E125-, L137I, K141Q, K142N, Y145D, -157D, N158D, D159R, V180I, T181D, T191S, I197L, P210Q, H212S, N252T, A253V, E265Q, T269A, T292A, K309Q, Q315H, R316M, A322S, K332Q, S335N, S336A, G361R, -368N, -370S, P409S, N432E, -433G, T436G, T439I, K464E, E472K, A473S; gp41: T109P, M118I, D137E, K144N, K156N, D163S, T165S, D217G, G221E, F263C, L265S, F304V, A310T, A312G, I319L, G324R, I332T, A343S, Q345L; nef: S8R, V11P, R22Q, P25R, F81Y, F139Y, R151S, A156V, N162S, V180I, S187I, R192K, R194W; p17: Q65H, Q69K, A118T; p2: -7T, T8N, N9G, S10-; p24: L6I, H87Q, A92P, I124V; p6: -35G, -36P; p7: R11K; rev: I55L, Q95L, S106P, G113R; tat: A21P, L35I, K40T, Y47N, N67D, T82A, E86K; vif: N22H, F39V, H56Y, D78E, R92G, I159R, I166V, K167V; vpr: I74F; vpu: V21I"}}}]}, {"name": "CRF08_BC_NODE_0000005", "node_attrs": {"div": 0.11803000000000001, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A1192G", "G1430A", "G1527A", "A1528C", "T1854C", "G3250A", "T4694G", "T5062G", "T5731C", "A6573G", "A6774G", "A6781-", "-6957T", "A7782G", "T7796A"], "gp120": ["-110T", "-112N", "E240G", "N432E", "-433P"], "gp41": ["N160S"], "nef": ["H191R"], "p24": ["K154R"], "p7": ["E21T"], "pro": ["I19T"], "tat": ["L68P"], "vif": ["I159R"]}, "labels": {"aa": "gp120: -110T, -112N, E240G, N432E, -433P; gp41: N160S; nef: H191R; p24: K154R; p7: E21T; pro: I19T; tat: L68P; vif: I159R"}}, "children": [{"name": "KF835497", "node_attrs": {"div": 0.14467000000000002, "accession": "KF835497", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN310"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["-280G", "A353G", "G395A", "C419T", "A423T", "C435A", "T495G", "A521G", "C525T", "C540A", "G607A", "G608T", "T662G", "A690-", "A691-", "A692-", "G693-", "A694-", "G695-", "G696-", "C697-", "T698-", "C700A", "G701A", "G703A", "A704G", "-705C", "-706C", "-707T", "-708G", "-709A", "-710C", "-711G", "-712G", "-713G", "-714A", "G717A", "C719T", "T731C", "C773T", "C774T", "T794C", "T884C", "T917C", "A977G", "T978G", "T1061C", "G1139A", "C1229T", "C1295T", "A1307G", "A1349C", "T1359A", "A1412G", "G1424A", "A1467C", "G1474A", "C1491T", "A1496C", "C1528T", "T1547C", "A1670G", "A1766G", "C1788A", "T1796C", "C2087T", "A2154G", "T2212G", "C2281T", "C2296T", "G2305A", "C2419A", "G2509A", "G2548A", "A2579T", "G2656A", "A2693G", "C2952T", "T3040A", "A3067C", "T3252C", "A3286G", "C3405T", "G3484A", "A3545C", "C3577T", "G3607A", "G3756A", "G3766A", "G3770A", "G3772A", "T3820C", "G3916A", "A3919G", "A3985G", "A4093G", "G4148A", "A4183G", "G4237A", "G4376A", "G4407A", "A4417G", "T4428C", "A4525C", "A4625G", "G4637A", "A4661G", "A4684G", "T4701G", "G4708A", "C4728A", "A4870C", "C4967A", "A4968G", "A5021G", "A5179G", "C5214A", "C5251A", "A5279G", "T5313C", "G5355C", "G5431A", "T5466C", "A5581G", "T5616A", "A5621C", "G5668A", "T5684C", "G5706A", "C5824A", "A5911T", "A6022G", "C6026T", "C6110G", "G6158A", "A6160T", "A6166T", "G6170T", "T6171A", "A6181T", "A6182G", "A6183G", "T6186C", "T6187C", "A6188C", "A6194G", "-6195T", "-6198T", "T6199G", "-6200A", "-6201A", "-6202C", "-6203C", "-6204C", "-6205T", "-6206A", "-6207C", "-6208A", "-6209A", "-6210T", "-6211G", "-6212A", "-6213G", "-6214A", "-6215G", "-6216C", "-6217G", "-6222A", "-6223G", "-6224C", "-6225G", "-6226G", "T6242A", "G6251A", "T6261A", "T6263G", "G6267A", "A6268T", "A6278G", "T6287C", "A6288G", "T6328G", "G6331A", "A6373G", "T6385C", "C6396G", "T6412C", "G6463A", "C6465A", "G6532A", "A6568G", "A6589C", "C6607T", "A6709G", "G6773A", "G6776A", "A6777G", "-6781T", "A6786C", "G6801A", "G6807A", "T6808A", "A6809G", "A6810G", "C6819A", "G6821A", "A6845C", "A6849T", "C6855A", "A6856C", "G6948A", "A6952C", "T6953A", "A6954T", "C6955G", "-6956C", "G6963A", "-6968G", "-6972G", "-6977C", "-6978A", "-6979A", "-6980G", "-6981C", "-6982A", "-6983T", "A7010-", "G7033A", "C7124A", "G7137A", "-7151C", "-7156T", "T7159G", "G7160A", "A7161C", "T7162A", "A7163G", "C7164A", "G7168C", "T7204C", "G7289C", "A7315G", "G7324T", "C7328A", "T7334C", "G7402A", "C7463A", "A7533G", "A7577G", "C7625A", "T7636C", "G7701A", "A7722T", "A7735T", "G7764A", "T7765G", "A7771C", "G7790A", "A7818G", "C7917T", "T7959A", "A7998G", "C8047T", "T8071C", "A8222C", "G8231A", "G8267A", "A8272G", "T8323G", "G8349A", "G8350A", "C8369T", "T8375A", "G8412C", "C8491A", "T8492G", "C8494T", "T8505A", "T8584A", "C8690T", "G8729A", "C8751A", "G8753A", "G8795T", "T8867C", "C8904G", "A8914G", "G8923A", "C8930T", "A8936G", "A8967T", "-8970G", "-8971A", "-8972C", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A", "C9006G"], "INT": ["A125T", "M154I", "V201I", "R211K", "I218T", "R284G", "D288N"], "RT-p51": ["K20R", "D39E", "S162C", "T200A", "T286V", "H315Q", "I386T", "A437V"], "RT-p66": ["K20R", "D39E", "S162C", "T200A", "T286V", "H315Q", "I386T", "A437V", "I484L", "S554N", "V559I"], "gp120": ["E19D", "I56M", "Q86E", "E102N", "T104S", "-105N", "-106Y", "-107N", "-109G", "-111H", "N113V", "-114S", "-124R", "S130T", "A133T", "V136E", "L137V", "R138N", "K142E", "Y145R", "-157N", "N158E", "D159K", "Y163N", "R164S", "L165S", "I166T", "N167S", "I173M", "T181S", "T204K", "R245S", "E307R", "-308S", "K309N", "N311T", "R316K", "S318K", "K319G", "A322E", "E323K", "I331L", "K332I", "A334N", "G365D", "Y367M", "-368L", "-370D", "-372E", "-373S", "I386-", "L424I", "R428H", "N435K", "T437E", "E438D", "E479Q"], "gp41": ["L9I", "F11L", "L54M", "K77R", "I92V", "Q108K", "R133K", "N140I", "K144N", "S154K", "K156N", "D163N", "K172R", "S205L", "L219H", "D232G", "R277S", "I307L", "A310T", "V322I", "F340L"], "nef": ["G3N", "E24Q", "A50E", "T51I", "C55S", "F81Y", "L137I", "R151S", "Q188E", "R194K"], "p17": ["M30L", "L34I", "S54A", "Q69K", "G91D", "N109K", "A121P", "E122D", "-124K", "-125I", "V128-"], "p24": ["L83V", "S210T"], "p6": ["-35T", "P37-"], "p7": ["M1L", "R3K", "P9S", "K10N", "T21I"], "rev": ["P67S", "G88R"], "tat": ["I69V", "S84T"], "vif": ["K33R", "F39V", "R41K", "H48N", "N95T", "H127Q", "I128V"], "vpr": ["P37Q", "T59A", "I70T", "V84L"], "vpu": ["D3E", "V21I", "V26A", "R73N"]}, "labels": {"aa": "INT: A125T, M154I, V201I, R211K, I218T, R284G, D288N; RT-p51: K20R, D39E, S162C, T200A, T286V, H315Q, I386T, A437V; RT-p66: K20R, D39E, S162C, T200A, T286V, H315Q, I386T, A437V, I484L, S554N, V559I; gp120: E19D, I56M, Q86E, E102N, T104S, -105N, -106Y, -107N, -109G, -111H, N113V, -114S, -124R, S130T, A133T, V136E, L137V, R138N, K142E, Y145R, -157N, N158E, D159K, Y163N, R164S, L165S, I166T, N167S, I173M, T181S, T204K, R245S, E307R, -308S, K309N, N311T, R316K, S318K, K319G, A322E, E323K, I331L, K332I, A334N, G365D, Y367M, -368L, -370D, -372E, -373S, I386-, L424I, R428H, N435K, T437E, E438D, E479Q; gp41: L9I, F11L, L54M, K77R, I92V, Q108K, R133K, N140I, K144N, S154K, K156N, D163N, K172R, S205L, L219H, D232G, R277S, I307L, A310T, V322I, F340L; nef: G3N, E24Q, A50E, T51I, C55S, F81Y, L137I, R151S, Q188E, R194K; p17: M30L, L34I, S54A, Q69K, G91D, N109K, A121P, E122D, -124K, -125I, V128-; p24: L83V, S210T; p6: -35T, P37-; p7: M1L, R3K, P9S, K10N, T21I; rev: P67S, G88R; tat: I69V, S84T; vif: K33R, F39V, R41K, H48N, N95T, H127Q, I128V; vpr: P37Q, T59A, I70T, V84L; vpu: D3E, V21I, V26A, R73N"}}}, {"name": "CRF08_BC_NODE_0000006", "node_attrs": {"div": 0.12462000000000001, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G367A", "T668C", "C1136T", "A1473G", "A1701T", "A1903C", "G2182A", "A2332G", "G2728A", "T2885C", "C3013T", "T3139C", "A3486G", "G3532A", "A3535T", "A3751T", "A3900G", "G4145A", "G4264A", "G4335A", "A4336G", "G4774C", "G4864A", "A5122G", "G5185A", "G5556A", "A5576C", "-5626G", "-5627T", "-5628A", "C5663T", "G5956C", "A6009G", "G6326A", "A6333C", "C6334T", "C6424T", "A6425G", "C6483A", "A6502G", "G6638C", "G6734A", "A6735T", "C6745T", "G6776-", "A6777-", "T6778-", "A6779-", "A6780-", "G6801-", "C6875T", "-6956A", "G7054A", "A7269C", "A7373G", "A7375G", "A7390G", "G7846A", "G8185A", "C8189T", "A8337T", "A8823G", "A8922T"], "INT": ["Q42R", "R187K"], "RT-p66": ["K464R", "Q480H"], "gp120": ["E34D", "N52S", "T191A", "P210Q", "E262Q", "E307G", "K309-", "Q315K", "R316-", "-368M", "-373N"], "gp41": ["I24V", "Q345L"], "nef": ["N161D", "R194W"], "p17": ["G11E"], "p6": ["T8S"], "p7": ["R3G"], "pro": ["E35D"], "rev": ["R14K", "G113R", "A114V"], "vif": ["R63T", "S93N", "K179R"], "vpu": ["A5E", "-7G", "A8L", "V9A", "G10V", "A19V"]}, "labels": {"aa": "INT: Q42R, R187K; RT-p66: K464R, Q480H; gp120: E34D, N52S, T191A, P210Q, E262Q, E307G, K309-, Q315K, R316-, -368M, -373N; gp41: I24V, Q345L; nef: N161D, R194W; p17: G11E; p6: T8S; p7: R3G; pro: E35D; rev: R14K, G113R, A114V; vif: R63T, S93N, K179R; vpu: A5E, -7G, A8L, V9A, G10V, A19V"}}, "children": [{"name": "KF835529", "node_attrs": {"div": 0.14709, "accession": "KF835529", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN344"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T201C", "-281C", "A389G", "C435A", "A519G", "A520C", "G562A", "A571T", "G579A", "A592G", "T593G", "A614C", "C669A", "C684A", "C774A", "G818A", "A986C", "A995G", "G1085A", "G1090A", "A1106G", "A1464C", "A1500G", "A1543G", "G1552A", "G1562A", "A1567G", "G1568A", "T1653G", "C1680A", "A1781G", "C1788G", "T1864C", "T1954G", "A2164G", "C2202A", "T2212G", "C2464G", "C2626G", "A2827C", "A2918C", "C2952T", "A2977G", "A3028G", "C3045T", "T3049C", "A3067T", "A3088G", "T3165G", "C3399T", "G3477A", "G3487A", "A3637G", "G3756A", "T3757G", "A3761G", "T3856C", "A3866G", "C3908G", "T3976C", "C3991T", "G4027A", "G4092C", "T4152C", "G4263A", "T4674C", "G4687A", "T4701A", "T4715C", "G4764A", "G4769A", "G4779A", "G4799A", "A4860G", "C4978A", "A5015C", "G5036A", "A5082C", "G5128T", "A5272G", "A5291C", "T5326G", "A5432C", "A5453T", "C5461T", "G5462A", "T5479C", "A5495G", "A5548G", "C5576T", "C5579A", "A5581C", "A5586T", "A5587G", "A5622T", "A5687T", "A5702G", "C5763T", "A5825G", "G5861A", "A5947G", "G6028A", "A6061G", "T6067C", "G6074A", "A6130G", "G6133A", "A6167G", "G6170T", "A6173T", "G6177A", "A6179G", "A6181G", "A6183C", "T6184G", "T6187C", "A6188T", "A6194-", "T6196-", "A6197-", "T6199-", "G6251A", "T6263G", "A6278G", "T6287A", "C6305A", "A6323G", "A6329G", "G6526A", "A6655G", "A6668G", "A6669G", "C6721T", "T6722G", "A6723C", "T6724A", "G6725A", "C6729A", "G6732C", "A6733C", "C6736T", "A6785C", "A6790C", "A6798G", "-6801T", "A6850C", "T6860C", "T6863G", "A6868G", "G6947A", "T6964C", "-6968T", "A6970C", "-6972T", "T6973G", "A6974C", "C6984-", "A6985-", "-6989A", "-6990A", "-6991T", "-6992A", "-6993G", "-6994T", "-6995A", "-6996C", "-6997A", "-6998A", "-6999G", "-7000C", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "-7006T", "-7007T", "-7008C", "-7009C", "G7065A", 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"L137V", "K142E", "Y145N", "L151I", "-157D", "D159E", "N160T", "N272G", "A291T", "T292K", "G293A", "D294I", "N311H", "K312N", "K315R", "-316M", "K332N", "A334T", "S336P", "S337A", "G365S", "-370S", "-372S", "-384D", "-385S", "R404Q", "L424I", "E432P", "N435D", "T437-", "I463V", "E472P"], "gp41": ["S107T", "I124V", "Y132F", "K144R", "P209L", "N212T", "N251S", "F255W", "G270V", "A281T", "F304L", "I321R"], "nef": ["T23A", "E24G", "K39R", "V133T", "Y135F", "V168L", "C169H", "E174D", "V180I", "R191Y"], "p1": ["S8A"], "p17": ["L34I", "K62A", "R76K", "Y79F", "V82I", "Y86W", "E93D", "Q112K", "Q117K"], "p2": ["M14L"], "p24": ["L15I", "M118I", "S120N"], "p6": ["L1I", "-35A", "P37-"], "p7": ["I12V", "K26R", "R29K", "K34R"], "rev": ["I21F", "L22I", "Q24L", "E30D", "P31A", "I55L", "Q74E", "G88S", "S99N"], "tat": ["K19A", "Y26F", "R29Y", "K40R", "T58A", "N67I", "P68H", "I69L", "K71E", "T77R"], "vif": ["Y30H", "R34K", "F39I", "G60R", "V65I", "R92G", "P131H", "I166L", "R181M"], "vpr": ["Q8H", "I63L", "I74S"], "vpu": ["E5D", "Y27F", "K32R"]}, "labels": {"aa": "INT: I31V, L45V, M84I, G106A, A124T, V126A, G163E; RT-p51: A36E, D39E, D123E, D177E, K275Q, T286V, A317V, M357R, A435V; RT-p66: A36E, D39E, D123E, D177E, K275Q, T286V, A317V, M357R, A435V, R461K, S554K, I556V; gp120: G3R, D74N, T104R, -105D, -106G, -107T, -109E, -111I, N112Y, A133T, L137V, K142E, Y145N, L151I, -157D, D159E, N160T, N272G, A291T, T292K, G293A, D294I, N311H, K312N, K315R, -316M, K332N, A334T, S336P, S337A, G365S, -370S, -372S, -384D, -385S, R404Q, L424I, E432P, N435D, T437-, I463V, E472P; gp41: S107T, I124V, Y132F, K144R, P209L, N212T, N251S, F255W, G270V, A281T, F304L, I321R; nef: T23A, E24G, K39R, V133T, Y135F, V168L, C169H, E174D, V180I, R191Y; p1: S8A; p17: L34I, K62A, R76K, Y79F, V82I, Y86W, E93D, Q112K, Q117K; p2: M14L; p24: L15I, M118I, S120N; p6: L1I, -35A, P37-; p7: I12V, K26R, R29K, K34R; rev: I21F, L22I, Q24L, E30D, P31A, I55L, Q74E, G88S, S99N; tat: K19A, Y26F, R29Y, K40R, T58A, N67I, P68H, I69L, K71E, T77R; vif: Y30H, R34K, F39I, G60R, V65I, R92G, P131H, I166L, R181M; vpr: Q8H, I63L, I74S; vpu: E5D, Y27F, K32R"}}}, {"name": "KF835535", "node_attrs": {"div": 0.14749, "accession": "KF835535", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN351"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C207-", "G208-", "A209-", "A210-", "A211-", "G212-", "T213-", "A214-", "A215-", "G216-", "-280G", "G382T", "G383T", "G491A", "T495G", "C496G", "C575T", "T587C", "C588A", "C604A", "G612A", "A613T", "A614G", "A694G", "G959A", "G1004A", "A1022G", "A1145G", "G1328A", "T1359A", "T1362C", "G1450A", "-1452G", "-1453C", "-1454T", "-1455G", "A1458-", "C1459-", "C1460-", "A1461-", "C1541A", "T1646C", "C1679T", "C1682T", "C1706T", "G1819A", "G1841A", "G1861A", "T1888C", "A1915C", "A1969G", "G1978A", "A1993G", "A2007G", "C2149T", "A2179G", "C2266T", "C2296T", "A2599G", "C2720T", "A2914G", "G2921A", "T2922C", "G2951A", "T3023G", "A3079G", "G3091A", "A3280G", "C3405T", "A3478G", "A3601C", "T3644C", "A3676C", "G3685A", "T3844C", "T3962C", "T3970C", "C3995T", "T4085C", "C4138T", "C4146A", "C4181A", "A4183T", "A4254C", "A4256C", "A4378G", "G4564A", "A4636G", "A4677G", "A4688G", "G4694A", "G4769T", "C4833A", "G4859T", "C4865G", "C4967A", "A4968G", "T4976C", "T4991C", "C5027T", "G5099A", "A5143G", "G5225A", "A5279G", "T5292C", "A5312G", "A5324G", "A5364C", "C5442T", "C5469T", "G5493T", "A5499G", "T5611A", "G5614A", "A5685C", "T5728A", "T5778C", "A5787C", "T5788A", "T5789C", "A5790-", "C5792G", "A5794G", "C5795G", "-5799T", "-5800G", "-5801T", "-5802C", "-5803A", "-5804A", "-5805C", "-5806A", "-5807A", "-5808T", "C5824A", "T5843C", "A5846T", "A5907C", "A5911C", "G6023T", "C6026A", "A6030C", "A6061T", "T6064C", "T6085G", "G6088A", "T6101C", "G6165A", "A6174G", "A6185G", "A6189G", "A6192G", "-6195A", "-6198G", "-6200A", "-6201C", "-6202T", "-6203G", "-6204G", "-6205T", "-6208A", 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"A33V", "A50V", "D63E", "F85V", "I101V", "K105R", "Y120F", "Q125H", "R151K", "N162S", "V168I", "K184Q"], "p17": ["W16F", "S54G", "L85I", "A90E", "E93M", "E120-", "A121-"], "p2": ["-7T", "T8N", "S10A", "-11V", "T12-", "I13-"], "p24": ["S210T"], "p6": ["S47N"], "pro": ["V15I", "K70R"], "rev": ["I21L", "C63Y", "I102V"], "tat": ["K19E", "Q39H", "N67T"], "vif": ["K17R", "I31V", "E61D", "H83N", "L91F", "N93K", "H127Q", "I128V", "N186S"], "vpr": ["G41S", "T59A", "I63T", "I70V"], "vpu": ["L2I", "D3N", "W41R", "R73N", "V79A", "N80I"]}, "labels": {"aa": "INT: A124N, Q136N, K160T, I161L; RT-p51: V276T, L310V, D324E, A437V; RT-p66: V276T, L310V, D324E, A437V, K527N; gp120: K18T, E19D, V57F, L58M, K59T, K69N, H77Q, -105G, -111Y, I126M, R138K, K140R, K143T, -157K, D159S, N160G, S161E, S162Y, T181N, L198I, D202E, H212R, I243M, E247K, N251D, N252S, A253V, N274K, D294A, L314F, V317-, S318-, K319-, -370G, -372I, -374G, -375P, -376S, -377S, -378N, P433E, N434E, T436D, T439I, R448K, E472A; gp41: L4I, D113N, M118L, D137E, K144E, L191F, I193V, F206L, A245I, H258R, R259H, F263S, A300T, I318F, N320D, R334T, F340L; nef: V11I, A33V, A50V, D63E, F85V, I101V, K105R, Y120F, Q125H, R151K, N162S, V168I, K184Q; p17: W16F, S54G, L85I, A90E, E93M, E120-, A121-; p2: -7T, T8N, S10A, -11V, T12-, I13-; p24: S210T; p6: S47N; pro: V15I, K70R; rev: I21L, C63Y, I102V; tat: K19E, Q39H, N67T; vif: K17R, I31V, E61D, H83N, L91F, N93K, H127Q, I128V, N186S; vpr: G41S, T59A, I63T, I70V; vpu: L2I, D3N, W41R, R73N, V79A, N80I"}}}]}]}]}, {"name": "CRF08_BC_NODE_0000007", "node_attrs": {"div": 0.11595, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G1568A", "A6183G", "T6186G", "T6196-", "G6260T", "A6788G", "-6978A", "-7151A", "A7998C"], "RT-p51": ["D324E"], "RT-p66": ["D324E"], "gp120": ["L58M", "V136L", "K312E", "A334T"], "gp41": ["D232T"], "p17": ["G123K"]}, "labels": {"aa": "RT-p51: D324E; RT-p66: D324E; gp120: L58M, V136L, K312E, A334T; gp41: D232T; p17: G123K"}}, "children": [{"name": "CRF08_BC_NODE_0000008", "node_attrs": {"div": 0.11828, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["-280G", "A1458G", "C2202A", "G2951A", "C4181A", "C5824A", "A5907G", "C6190T", "A6329G", "G6331T", "A6774C", "A6806G", "C7170T", "A7688G", "G7961A", "A7964G", "A8110G", "T8584A", "T8756C", "G8795T", "A8823G"], "INT": ["Q136K"], "RT-p51": ["A36E"], "RT-p66": ["A36E"], "gp120": ["K18R", "-115S", "E307A", "-308D", "S318G", "T439I"], "gp41": ["N129D", "T165S", "G220R", "R221G"], "nef": ["F81Y", "N161D"], "p17": ["T115M"], "p2": ["-11A", "T12-"], "rev": ["R38Q", "K39R", "R50N"], "vpu": ["R73N"]}, "labels": {"aa": "INT: Q136K; RT-p51: A36E; RT-p66: A36E; gp120: K18R, -115S, E307A, -308D, S318G, T439I; gp41: N129D, T165S, G220R, R221G; nef: F81Y, N161D; p17: T115M; p2: -11A, T12-; rev: R38Q, K39R, R50N; vpu: R73N"}}, "children": [{"name": "KF835495", "node_attrs": {"div": 0.14656, "accession": "KF835495", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN306"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A278G", "C417A", "C419A", "C471G", "C496T", "G542A", "A585G", "C586T", "G615A", "C679T", "A680G", "-699A", "-700C", "C771G", "C950T", "T978G", "A1034G", "T1058C", "G1077A", "G1078A", "A1079T", "A1089G", "G1090C", "A1097C", "G1199A", "A1242G", "C1243T", "A1263T", "C1292T", "G1313A", "A1400G", "A1487G", "C1491T", "C1492T", "A1500G", "C1721T", "C1748A", "A1766G", "C1790T", "G1861A", "A1932G", "A1951G", "T1987C", "A2023G", "C2071T", "C2101A", "G2177A", "A2216T", "A2396G", "A2399C", "T2431C", "A2459G", "G2530A", "T2579A", "T2605C", "A2645G", "G2664C", "A2677G", "A2693G", "A2715G", "G2728A", "A2738T", "C2739A", "T2770C", "C2797A", "C2831T", "G2925A", "G2972A", "T2996C", "A3019G", "C3038T", "A3039G", "A3048T", "C3095A", "G3097T", "C3133T", "T3165A", "A3192G", "C3322A", "A3421T", "A3427G", "G3523A", "A3535G", "A3592C", "A3621T", "C3652T", "A3674G", "G3679A", "A3733G", "T3793C", "T3856C", "T3904C", "A3961G", "G4027A", "A4063G", "A4183C", "G4285A", "A4303G", "A4643G", "T4701G", "G4719C", "G4779A", "A4814G", "G4829A", "A4860G", "C4871T", "T4914C", "C4967A", "A4968G", "C4978A", "G5030A", "A5143G", "G5176A", "G5188A", "A5267G", "G5355A", "G5370A", "T5391C", "G5427A", "G5431A", "C5461A", "G5462A", "C5463A", "A5555C", "G5556A", "C5579T", "A5581G", "T5599G", "C5600T", "-5601A", "-5602T", "-5603C", "T5611A", "G5614A", "A5622T", "-5626G", "-5627T", "-5628A", "G5643A", "A5644G", "C5679T", "T5697C", "T5728C", "G5729A", "T5731C", "A5908G", "A5918G", "C5929T", "A6015G", "A6020T", "A6026T", "A6142G", "T6148C", "-6165G", "A6174G", "A6177G", "T6178A", "G6179A", "A6182G", "G6183C", "T6187C", "A6194G", "-6195G", "-6196C", "-6198A", "-6205G", "-6206A", "-6207G", "-6208A", "-6209C", "-6210C", "-6211T", "-6212A", "-6213C", "-6214A", "-6215A", "-6216T", "-6217G", "-6218G", "-6219A", "-6220C", "-6221A", "-6222A", 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"A8643G", "A8701T", "A8717C", "G8729A", "G8774A", "T8832C", "C8873T", "G8875A", "A8885G", "A8886C", "G8902T", "-8993C", "-8994C", "C9028A", "T9029C", "A9095G"], "INT": ["M84I", "K136N"], "RT-p51": ["E28K", "M41L", "K101E", "K102Q", "K122E", "C162S", "M184V", "G190A", "T200A", "E207G", "T215Y", "R277K", "V293I", "H315C", "Y318F", "Q334N", "M357K", "K366R"], "RT-p66": ["E28K", "M41L", "K101E", "K102Q", "K122E", "C162S", "M184V", "G190A", "T200A", "E207G", "T215Y", "R277K", "V293I", "H315C", "Y318F", "Q334N", "M357K", "K366R", "Q509L", "K527E"], "gp120": ["T22A", "Q54R", "I56L", "M58L", "T104R", "N108-", "-114V", "-123K", "-124E", "I126M", "R138K", "K142D", "-157N", "N158D", "N160K", "S161N", "Y163S", "R164K", "L165N", "I166S", "N167S", "I197L", "A253V", "E262K", "E265K", "R316E", "K332N", "S336P", "G361K", "-368N", "-370G", "-372N", "-373M", "-374T", "-375N", "-376G", "-385T", "K418E", "N432V", "-433P", "N435T", "T437-", "G443A", "E472D"], "gp41": ["L4I", "I24M", "R46K", "K77R", "D109Q", "D113E", "I124V", "S125G", "D137E", "D163G", "N166K", "I193V", "T208I", "K231N", "N239S", "H258R", "Q323L", "C326G", "N331S"], "nef": ["I10R", "K39E", "I101V", "Y120F", "Q125H", "R151S", "R178K", "K182Q", "S187I"], "p17": ["H28K", "L46V", "S54L", "T84V", "V94I"], "p24": ["P14A", "L83V", "G116N", "S120A", "T171V", "T178S"], "p7": ["P9F", "I12V"], "pro": ["K45R"], "rev": ["R14Q", "E30K", "N50H", "*101E", "K105E"], "tat": ["R29K", "Q60P", "I69V", "P73S", "R76Q"], "vif": ["K36N", "F39V", "D45H", "V65I", "R92G", "Y110H", "H127Q", "I128V", "P131H", "K141N", "N186S"], "vpr": ["T55A", "V84M", "A89T", "S96P"], "vpu": ["L2I", "D3N", "A5D", "-7G", "A8L", "V9A", "G10V", "I13V", "W41Q"]}, "labels": {"aa": "INT: M84I, K136N; RT-p51: E28K, M41L, K101E, K102Q, K122E, C162S, M184V, G190A, T200A, E207G, T215Y, R277K, V293I, H315C, Y318F, Q334N, M357K, K366R; RT-p66: E28K, M41L, K101E, K102Q, K122E, C162S, M184V, G190A, T200A, E207G, T215Y, R277K, V293I, H315C, Y318F, Q334N, M357K, K366R, Q509L, K527E; gp120: T22A, Q54R, I56L, M58L, T104R, N108-, -114V, -123K, -124E, I126M, R138K, K142D, -157N, N158D, N160K, S161N, Y163S, R164K, L165N, I166S, N167S, I197L, A253V, E262K, E265K, R316E, K332N, S336P, G361K, -368N, -370G, -372N, -373M, -374T, -375N, -376G, -385T, K418E, N432V, -433P, N435T, T437-, G443A, E472D; gp41: L4I, I24M, R46K, K77R, D109Q, D113E, I124V, S125G, D137E, D163G, N166K, I193V, T208I, K231N, N239S, H258R, Q323L, C326G, N331S; nef: I10R, K39E, I101V, Y120F, Q125H, R151S, R178K, K182Q, S187I; p17: H28K, L46V, S54L, T84V, V94I; p24: P14A, L83V, G116N, S120A, T171V, T178S; p7: P9F, I12V; pro: K45R; rev: R14Q, E30K, N50H, *101E, K105E; tat: R29K, Q60P, I69V, P73S, R76Q; vif: K36N, F39V, D45H, V65I, R92G, Y110H, H127Q, I128V, P131H, K141N, N186S; vpr: T55A, V84M, A89T, S96P; vpu: L2I, D3N, A5D, -7G, A8L, V9A, G10V, I13V, W41Q"}}}, {"name": "CRF08_BC_NODE_0000009", "node_attrs": {"div": 0.12072999999999999, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T495G", "C540A", "C774A", "A5911C", "A6061T", "A6275C", "A6323G", "A6573G", "A6605G", "T6958-", "A7107G", "C7152A", "A7269G", "A7629C", "A8458G", "G8739A"], "gp120": ["E19D", "K69N", "-116N", "K141Q", "E240G", "N251D", "K418R", "E472G"], "nef": ["K39R", "V133I"], "p17": ["S54A", "E55D", "Q69K"], "p24": ["L15I"], "tat": ["L68P"]}, "labels": {"aa": "gp120: E19D, K69N, -116N, K141Q, E240G, N251D, K418R, E472G; nef: K39R, V133I; p17: S54A, E55D, Q69K; p24: L15I; tat: L68P"}}, "children": [{"name": "CRF08_BC_NODE_0000010", "node_attrs": {"div": 0.12383999999999999, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A214G", "G438A", "A500T", "T858C", "A878G", "T1245C", "C1790T", "A3103G", "A3775G", "G4148A", "T4412C", "A4636G", "A4968G", "G5386A", "A5555C", "G5556A", "G5706A", "A6001G", "-6200A", "-6201G", "-6208A", "-6209A", "-6210T", "-6211G", "-6213T", "-6214A", "-6215A", "-6216T", "A6346G", "A6362T", "G6801T", "C6855A", "A6905G", "-6991A", "-6992A", "-6993C", "-6994T", "-6995C", "-6996A", "-6997A", "-7000A", "A7010-", "C7089A", "G7150A", "-7153T", "A7782G", "A8019G", "G8327T", "C8328T", "C8382T", "A8746T", "G8808A", "C9006G"], "INT": ["A125T"], "gp120": ["-114S", "-157E", "T170S", "R316M", "T334K", "R351G", "I386-"], "gp41": ["N160S", "N239S", "A342L"], "nef": ["P14S", "Y135F", "A156T"], "p17": ["V35I"], "rev": ["R14Q"], "tat": ["V4I", "Q60P"], "vif": ["K17R", "D45E", "I128V"], "vpr": ["S94N"]}, "labels": {"aa": "INT: A125T; gp120: -114S, -157E, T170S, R316M, T334K, R351G, I386-; gp41: N160S, N239S, A342L; nef: P14S, Y135F, A156T; p17: V35I; rev: R14Q; tat: V4I, Q60P; vif: K17R, D45E, I128V; vpr: S94N"}}, "children": [{"name": "KF835500", "node_attrs": {"div": 0.15829, "accession": "KF835500", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN313"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A278G", "T305A", "G451A", "G498A", "A519G", "A520G", "G562C", "T571A", "T593C", "G607A", "C618A", "A656G", "A677G", "A678G", "C681A", "G687A", "A694C", "G695T", "C697A", "T698C", "G701-", "G702-", "G703-", "A704-", "-711G", "-712A", "-713G", "-714A", "C749T", "T851C", "T978A", "T979C", "A1050G", "T1061C", "G1077C", "G1078A", "A1101G", "C1220T", "C1229T", "A1242G", "C1292T", "A1307G", "T1325C", "C1342G", "T1359A", "A1367G", "A1464C", "G1466A", "A1476G", "C1478T", "T1481C", "A1487G", "G1622A", "G1664A", "A1701G", "C1711T", "C1714A", "A1715G", "C1721T", "-1729T", "-1730C", "-1731G", "-1732A", "-1733G", "-1734G", "T1735G", "C1736A", "A1738-", "G1739-", "G1740-", "A1741-", "G1742-", "A1743-", "T1754C", "A1772G", "T1864C", "A1921G", "A2059G", "T2062C", "C2083T", "G2134A", "A2170C", "G2224A", "T2299C", "T2315C", "G2358C", "A2362G", "A2399C", "A2400G", "C2464A", "C2488T", "A2508C", "G2509C", "A2512T", "G2602A", "T2608C", "A2627T", "T2632C", "A2693G", "A2827T", "C2831T", "A2881G", "C2960T", "C2968A", "A3019G", "C3032T", "G3094A", "G3097T", "A3124G", "C3133T", "G3169A", "A3170G", "G3205A", "G3214A", "A3220T", "C3274T", "T3310C", "C3399T", "G3631A", "G3643T", "A3676G", "A3718T", "A3961G", "T3962C", "T3970C", "A4000G", "A4030G", "T4075C", "A4231G", "A4420G", "G4516A", "G4564A", "A4581G", "C4585T", "A4641C", "A4651C", "A4677G", "T4679C", "G4687A", "T4694G", "T4703C", "C4721G", "A4766G", "G4769A", "T4827C", "C4967A", "A5057G", "G5134A", "T5170C", "A5272G", "A5360G", "G5431A", "C5442T", "A5453T", "T5454C", "T5457C", "A5495C", "T5618A", "A5619T", "G5620-", "A5621-", "A5622-", "T5623A", "T5624A", "-5626G", "-5627T", "-5628A", "G5632A", "G5636C", "T5728A", "T5788C", "T5843C", "A5856G", "A5915C", "T5941C", "T5980C", "C6010A", "A6020G", "G6023C", "A6030T", "A6059G", "T6061G", "G6065A", "T6154C", "A6164-", "A6166-", "A6167-", "A6168-", "T6169-", "G6170-", "T6171-", "T6172-", "C6175A", "A6180C", "G6183C", "G6186C", "A6189T", "T6193A", "-6195A", "-6196T", "A6197G", "-6198C", "-6202C", "-6203A", "-6204G", "-6205T", "-6206A", "-6207G", "-6212A", "-6217C", "-6218T", "-6219A", "-6220C", "-6221T", "-6222A", "-6223T", "-6224G", "-6225A", "-6226G", "G6227A", "G6229C", "A6232G", "C6252T", "C6256T", "T6260A", "A6281T", "A6282C", "G6284A", "G6326A", "G6329T", "A6330C", "A6333C", "C6334T", "T6335G", "C6336A", "T6337G", "A6338T", "G6339A", "G6368A", "A6395T", "C6418T", "C6441T", "C6488A", "A6520T", "G6566T", "A6576G", "G6593A", "A6640G", "C6660T", "A6689G", "A6716G", "C6717T", "C6721T", "G6732A", "G6743A", "A6753T", "C6758T", "A6781T", "G6788A", "C6834A", "A6848G", "T6857C", "T6860C", "C6862A", "T6863G", "C6864T", "G6871A", "C6938A", "G6940A", "G6947A", "T6953-", "A6954-", "C6955-", "A6959-", "A6960-", "T6961-", "G6962-", "G6963-", "-6968A", "-6969T", "-6970G", "-6972G", "-6973A", "A6974C", "C6975A", "A6978-", "-6983A", "A6985C", "-6986A", "-6987A", "-6988G", "-6989G", "-6990T", "-6998C", "-6999T", "-7001A", "-7002C", "-7003T", "-7004T", "-7005A", "-7006A", "-7007A", "-7008C", "-7009A", "C7018T", "G7026A", "A7056G", "G7088A", "T7130C", "G7133A", "T7134C", "A7147T", "A7151T", "A7152G", "-7156C", "T7159A", "G7160T", "T7162G", "C7164A", "A7165C", "G7182C", "A7255G", "G7268A", "G7269C", "A7315G", "T7321C", "G7366A", "G7440A", "G7459A", "A7532C", "A7542G", "A7668G", "A7683T", "C7692T", "G7701C", "G7702A", "T7747C", "G7764A", "T7765G", "A7771T", "A7772G", "G7790A", "A7832G", "G7873A", "T7876C", "A7880G", "T7913C", "C7926T", "C7998A", "C8092A", "A8093G", "T8094C", "A8098G", "G8110A", "G8135A", "G8137T", "T8164C", "G8267T", "G8274C", "C8291T", "G8385A", "A8409G", "T8440C", "T8495C", "A8516G", "G8531T", "A8584T", "T8607C", "T8608A", "T8645C", "A8739C", "T8740C", "T8795A", "A8812C", "C8813T", "G8844A", "A8874G", "A8882C", "A8914T", "C9078T", "T9115C"], "INT": ["K269R"], "RT-p51": ["W88S", "K102R", "D123E", "E138A", "I178L", "T200A", "D291E", "P313S", "Q334H", "T359A", "A435V"], "RT-p66": ["W88S", "K102R", "D123E", "E138A", "I178L", "T200A", "D291E", "P313S", "Q334H", "T359A", "A435V", "E516D"], "gp120": ["N1S", "K21Q", "N52K", "I56V", "V57L", "E59V", "N69E", "D71N", "-105T", "-106I", "-107K", "-109A", "N113-", "N116S", "-117R", "-121N", "-122N", "-123S", "-124T", "E125N", "A133V", "L136I", "K143S", "V144M", "D159S", "N160T", "S161E", "S162Y", "A172T", "T181S", "A196V", "H212N", "A238S", "E241G", "E247K", "T269I", "I279V", "T288V", "A291T", "T292E", "G293D", "D294I", "D297N", "Q300L", "H302Y", "K309N", "E312K", "P326H", "K332E", "S335P", "S336P", "S337V", "L362I", "G365S", "Y367-", "N369-", "R391K", "E401G", "A412K", "V427T", "G443A", "G472T"], "gp41": ["R46K", "K77Q", "Q80R", "D109A", "K122R", "Y127F", "T130I", "R133T", "S154K", "K156N", "N157D", "D163N", "I177V", "I193V", "T208I", "T232N", "F263L", "I264A", "G278S", "V322L", "G324A", "R330C"], "nef": ["A15T", "T23A", "V33A", "E63D", "Y81F", "F89H", "I133P", "N157T", "V168I", "R178G", "H191L"], "p17": ["R39K", "D55N", "K62G", "R76T", "F79Y", "G91E", "M115A", "Q116K", "A118T", "E120A", "A121D"], "p2": ["M14L"], "p24": ["L83T", "T107A", "G116Q", "I124V", "T171A", "A204G", "S210T"], "p6": ["A12E", "E21G", "T22A"], "p7": ["S4G"], "rev": ["N50K", "H82S", "T84A", "G88R", "G96Q", "V97P", "S106P"], "tat": ["Y26F", "K40T", "P73S"], "vif": ["N22T", "I31V", "R34K", "H127Q", "K141N", "R183H"], "vpu": ["L4Y", "A5K", "L6-", "-7V", "V9I", "G10A", "W41R", "V79A"]}, "labels": {"aa": "INT: K269R; RT-p51: W88S, K102R, D123E, E138A, I178L, T200A, D291E, P313S, Q334H, T359A, A435V; RT-p66: W88S, K102R, D123E, E138A, I178L, T200A, D291E, P313S, Q334H, T359A, A435V, E516D; gp120: N1S, K21Q, N52K, I56V, V57L, E59V, N69E, D71N, -105T, -106I, -107K, -109A, N113-, N116S, -117R, -121N, -122N, -123S, -124T, E125N, A133V, L136I, K143S, V144M, D159S, N160T, S161E, S162Y, A172T, T181S, A196V, H212N, A238S, E241G, E247K, T269I, I279V, T288V, A291T, T292E, G293D, D294I, D297N, Q300L, H302Y, K309N, E312K, P326H, K332E, S335P, S336P, S337V, L362I, G365S, Y367-, N369-, R391K, E401G, A412K, V427T, G443A, G472T; gp41: R46K, K77Q, Q80R, D109A, K122R, Y127F, T130I, R133T, S154K, K156N, N157D, D163N, I177V, I193V, T208I, T232N, F263L, I264A, G278S, V322L, G324A, R330C; nef: A15T, T23A, V33A, E63D, Y81F, F89H, I133P, N157T, V168I, R178G, H191L; p17: R39K, D55N, K62G, R76T, F79Y, G91E, M115A, Q116K, A118T, E120A, A121D; p2: M14L; p24: L83T, T107A, G116Q, I124V, T171A, A204G, S210T; p6: A12E, E21G, T22A; p7: S4G; rev: N50K, H82S, T84A, G88R, G96Q, V97P, S106P; tat: Y26F, K40T, P73S; vif: N22T, I31V, R34K, H127Q, K141N, R183H; vpu: L4Y, A5K, L6-, -7V, V9I, G10A, W41R, V79A"}}}, {"name": "KF835512", "node_attrs": {"div": 0.14995999999999998, "accession": "KF835512", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN325"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C179A", "G224A", "A286G", "G401A", "C417T", "A418G", "C419T", "A497G", "C525T", "A530C", "C572T", "C679T", "A680G", "-699A", "-700C", "G740A", "C747G", "T748C", "C773A", "C830T", "G1002A", "G1004A", "T1064G", "G1078C", "G1090A", "A1115C", "C1316T", "G1388A", "A1443T", "C1491T", "A1495G", "A1500C", "T1501C", "A1508G", "C1541A", "G1543A", "C1571T", "C1680A", "A1689C", "A1709G", "C1768T", "A1879G", "A1904G", "A1966G", "T2041C", "C2071T", "A2154G", "A2202C", "A2216T", "G2248A", "T2315G", "T2338C", "A2404T", "C2419A", "G2498A", "A2637G", "A2645G", "T2672C", "A2677G", "C2756T", "G2869A", "A2884G", "G2925A", "G2946A", "A2959G", "A3007G", "T3040G", "G3098A", "A3099G", "G3151A", "T3172A", "G3221T", "G3292A", "C3322T", "T3346C", "A3421G", "G3477A", "A3491G", "T3497A", "A3538G", "G3607A", "A3651G", "A3739C", "A3802G", "A3985G", "G4036A", "G4145A", "C4146A", "G4539A", "C4543G", "T4674C", "A4684G", "T4694A", "C4721A", "A4763G", "A4870G", "T4919C", "T5006A", "T5028C", "C5043T", "A5051G", "G5060A", "A5082G", "T5091C", "C5250A", "T5263C", "T5303C", "T5314C", "G5370A", "A5377C", "C5412T", "T5424C", "A5432C", "T5439C", "C5448T", "T5568C", "A5576C", "A5581G", "A5621G", "G5668A", "A5718G", "G5781T", "G5784A", "A5849G", "T5851G", "A5896G", "A5946G", "G5956T", "C5958A", "C5974A", "A6044C", "G6158A", "A6160C", "-6165C", "A6174G", "A6180T", "T6184C", "A6192G", "-6195G", "-6196C", "-6198A", "-6202T", "-6212T", "-6217G", "-6218C", "-6219T", "-6220G", "-6221A", "-6222T", "G6277A", "A6283G", "T6285A", "A6304G", "T6310C", "T6325G", "A6327G", "A6330G", "T6331A", "C6424T", "T6436G", "C6446A", "C6477A", "C6483A", "A6535G", "C6599A", "G6601A", "C6612T", "G6638C", "C6736A", "G6773A", "C6774A", "T6778G", "T6857G", "-6956A", "-6957T", "-6958G", "G6962A", "C6966G", "A6967C", "-6968T", "-6969C", "-6970A", "-6977C", "-6979A", "-6980C", "-6981C", "-6982A", "-6983G", "C6984T", "-6986G", "-6987C", "-6988T", "-6989C", "-6990A", "-6998A", "-6999C", "A7063G", "C7064T", "A7066G", "A7149C", "A7155C", "-7156A", "A7161C", "G7168A", "G7190A", "G7197A", "A7345T", "A7373G", "A7375G", "G7402A", "T7403C", "C7463A", "G7477A", "T7615C", "C7625A", "A7626T", "G7628T", "T7642A", "G7677A", "G7688A", "C7714A", "A7722C", "A7742C", "A7800G", "T7801A", "G7835A", "A7840G", "T7921C", "G7936A", "G7944A", "G7956A", "A8006G", "T8008G", "C8047T", "A8055G", "G8109A", "A8262G", "C8290A", "A8309C", "G8357C", "T8426C", "G8453A", "G8531A", "G8588A", "A8653G", "T8672A", "A8701T", "A8717C", "A8804G", "T8831C", "T8845C", "T8847A", "T8883C", "G8902T", "G8917A", "G8923T", "T8947G", "T8948G", "C8964T", "-8970A", "-8971C", "-8972T", "-8973T", "-8974T", "-8975C", "-8976T", "-8977G", "-8978C", "-8979A", "T9014G", "G9016C", "T9029-", "-9033G"], "INT": ["A124N", "S255N", "D256E"], "RT-p51": ["K20R", "E36A", "M41L", "L74V", "K103N", "V135I", "Y181C", "M184V", "H221Y", "R277K", "R284K", "H315Q", "D335S", "A376S"], "RT-p66": ["K20R", "E36A", "M41L", "L74V", "K103N", "V135I", "Y181C", "M184V", "H221Y", "R277K", "R284K", "H315Q", "D335S", "A376S", "R461K", "I466V", "S468T", "N519S"], "gp120": ["K31R", "E34D", "T35K", "N64H", "E102N", "-105N", "-106V", "-107S", "-109V", "-110S", "-111S", "V144E", "N158G", "D159G", "L198I", "T208K", "P210Q", "L249I", "A253V", "E262Q", "D294E", "A307K", "D308E", "S335A", "-368M", "N369T", "-370N", "T371S", "-372S", "-373S", "R404W", "A412E", "N432T", "-433N", "N434T", "T436A", "D446N", "R448K"], "gp41": ["I24V", "L54M", "Q108I", "D109S", "D113E", "S125N", "D129N", "D137E", "N140T", "K147Q", "N166R", "V178I", "G214E", "R218K", "I235V", "N251S", "R269K", "N320S", "I336L"], "nef": ["W5C", "K104R", "Y120F", "Q125H", "R151S", "V168A", "C169S", "S187I", "R192K", "R194M", "F202W"], "p17": ["H28C", "Q65H"], "p2": ["-7S", "T8-"], "p24": ["L6A", "V91I", "G116A", "S120N", "E128D"], "p6": ["L1I", "P30L"], "p7": ["P9S", "K10R", "I12P", "R26K"], "pro": ["I36V"], "rev": ["I18T", "I21L", "E30K", "H53R", "S54A", "P67S"], "tat": ["M1L", "K19A", "N67T", "I69V", "R76Q", "G79R", "G83S"], "vif": ["Y30H", "K33R", "N95S", "I166V"], "vpr": ["T49N", "A89T", "N91T"], "vpu": ["A5G", "V21I", "E58D", "D81G", "L82V"]}, "labels": {"aa": "INT: A124N, S255N, D256E; RT-p51: K20R, E36A, M41L, L74V, K103N, V135I, Y181C, M184V, H221Y, R277K, R284K, H315Q, D335S, A376S; RT-p66: K20R, E36A, M41L, L74V, K103N, V135I, Y181C, M184V, H221Y, R277K, R284K, H315Q, D335S, A376S, R461K, I466V, S468T, N519S; gp120: K31R, E34D, T35K, N64H, E102N, -105N, -106V, -107S, -109V, -110S, -111S, V144E, N158G, D159G, L198I, T208K, P210Q, L249I, A253V, E262Q, D294E, A307K, D308E, S335A, -368M, N369T, -370N, T371S, -372S, -373S, R404W, A412E, N432T, -433N, N434T, T436A, D446N, R448K; gp41: I24V, L54M, Q108I, D109S, D113E, S125N, D129N, D137E, N140T, K147Q, N166R, V178I, G214E, R218K, I235V, N251S, R269K, N320S, I336L; nef: W5C, K104R, Y120F, Q125H, R151S, V168A, C169S, S187I, R192K, R194M, F202W; p17: H28C, Q65H; p2: -7S, T8-; p24: L6A, V91I, G116A, S120N, E128D; p6: L1I, P30L; p7: P9S, K10R, I12P, R26K; pro: I36V; rev: I18T, I21L, E30K, H53R, S54A, P67S; tat: M1L, K19A, N67T, I69V, R76Q, G79R, G83S; vif: Y30H, K33R, N95S, I166V; vpr: T49N, A89T, N91T; vpu: A5G, V21I, E58D, D81G, L82V"}}}]}, {"name": "CRF08_BC_NODE_0000011", "node_attrs": {"div": 0.12625999999999998, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A694C", "G695T", "C697A", "T698C", "C1098G", "C1118T", "A1568G", "T1628G", "A1709T", "-1732G", "-1733G", "-1734T", "A1759G", "G1819A", "G2498A", "T2542C", "C3129A", "A3192G", "T3391C", "A3486G", "A3674G", "A3675G", "G3916A", "A4084G", "A4178G", "G4687A", "T4701G", "G4774A", "T5424C", "A5718G", "T5728A", "A5849G", "G6029A", "G6179A", "A6182G", "A6333G", "C6334T", "T6337G", "A6576G", "G6588A", "G6593A", "G7160A", "G7212A", "A7713T", "A7734G", "T7921C", "A8378G", "C8406A", "G8453A", "A8793G", "A8936G", "-8972T", "-8973T", "-8975C", "-8976T", "-8979A"], "INT": ["I135V"], "RT-p51": ["V135I", "P345Q", "K366R"], "RT-p66": ["V135I", "P345Q", "K366R", "I452L", "K464R", "K527G"], "gp120": ["E59K", "H212Q", "R245K", "E247K", "S453N"], "gp41": ["D137V"], "nef": ["R151G"], "p17": ["E120A", "A121D"], "p24": ["P123A"], "p6": ["S47N"], "vif": ["R34K", "F39V", "R63K"], "vpu": ["W41R", "D81G"]}, "labels": {"aa": "INT: I135V; RT-p51: V135I, P345Q, K366R; RT-p66: V135I, P345Q, K366R, I452L, K464R, K527G; gp120: E59K, H212Q, R245K, E247K, S453N; gp41: D137V; nef: R151G; p17: E120A, A121D; p24: P123A; p6: S47N; vif: R34K, F39V, R63K; vpu: W41R, D81G"}}, "children": [{"name": "KF835501", "node_attrs": {"div": 0.15657, "accession": "KF835501", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN314"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T200G", "T201C", "A214G", "T305-", "G365C", "G367A", "A388G", "C419T", "C434T", "A461T", "G498C", "A500G", "T539C", "C558A", "T571A", "C575T", "G607A", "G644A", "A690G", "C747A", "C749G", "C872T", "C890T", "A941G", "G1004A", "T1061C", "G1067A", "C1136T", "T1172C", "G1205A", "A1242G", "C1243T", "A1263T", "A1268G", "A1274C", "C1330T", "G1339A", "C1342G", "A1349C", "C1350T", "T1359A", "G1421A", "T1501C", "A1529G", "A1601G", "A1643G", "T1728A", "-1729C", "-1730A", "-1731G", "A1738C", "A1746G", "C1788G", "A1855C", "A1920G", "C1979G", "T2041A", "C2101A", "C2199A", "T2206A", "C2254T", "T2356C", "A2459G", "T2485C", "T2497C", "C2575T", "T2581C", "A2593G", "A2617G", "A2627C", "A2662G", "A2693G", "T2770C", "C2828G", "G2869A", "T2885C", "T2917C", "A3046C", "A3067G", "G3094C", "C3095A", "G3097T", "A3127T", "G3151A", "A3164T", "G3221T", "C3222G", "A3224T", "G3264A", "G3442A", "A3449C", "A3529G", "G3553A", "G3643A", "G3679A", "A3703G", "A3718G", "A3775G", "A3787G", "A3816G", "C3922T", "A4090G", "A4333G", "G4376A", "T4412C", "C4471T", "G4549A", "A4625G", "G4642A", "C4728A", "A4781G", "G4799A", "T4800C", "C4844T", "A4845G", "A4860G", "T4914C", "A5005G", "T5006C", "A5057G", "G5059A", "T5062C", "A5065G", "A5085C", "G5104A", "A5122G", "G5134A", "A5249C", "C5250A", "A5279G", "A5282C", "A5291C", "A5312G", "C5333T", "T5378C", "A5432C", "A5496C", "C5547A", "T5568C", "A5575G", "A5587G", "C5600-", "-5602C", "-5603C", "T5612C", "A5621C", "A5640T", "A5687T", "T5704A", "G5706A", "A5711G", "T5731G", "G5748A", "G5781T", "A5787T", "T5788A", "T5789C", "A5790-", "C5792G", "A5794G", "C5795G", "-5799T", "-5800G", "-5801T", "-5802C", "-5803A", "-5804A", "-5805C", "-5806A", "-5807T", "-5808T", "T5851G", "G5853A", "G5907A", "A5918G", "A6031G", "A6051C", "G6073A", "-6165A", "A6174C", "A6176T", "T6178C", "T6184G", "G6186C", "A6188T", "A6189C", "T6190C", "A6194-", "A6197-", "T6199-", "A6278C", "G6323A", "G6329A", "T6335G", "C6336G", "A6338T", "G6339A", "C6424T", "A6425G", "A6438T", "T6490A", "A6500T", "A6502T", "G6575A", "T6586C", "G6638C", "C6736T", "G6776A", "A6781C", "A6786C", "G6799T", "G6806A", "C6819A", "C6824T", "A6840G", "A6854G", "T6857C", "A6905G", "G6962A", "G6963A", "-6968G", "-6969G", "-6970A", "-6972G", "-6973T", "C6975A", "-6977T", "A6978C", "-6979A", "-6980A", "-6981A", "-6982C", "-6983T", "-7007A", "-7008C", "-7009C", "G7057A", "C7089A", "C7124A", "G7150C", "-7153G", "A7155C", "-7156A", "G7252A", "G7256A", "A7297G", "T7323C", "A7342T", "G7343T", "C7344T", "A7373G", "A7375G", "C7463A", "A7533G", "T7537C", "T7615C", "C7629A", "G7640C", "T7642A", "A7655C", "C7658G", "G7660A", "A7777C", "A7782G", "T7796A", "A7814T", "G7885A", "C7917T", "T8008A", "C8009A", "A8014G", "A8032G", "C8092T", "A8093C", "T8097C", "G8180T", "C8183T", "A8261T", "A8264C", "G8317A", "T8323A", "G8349A", "G8356T", "G8357A", "G8368A", "C8369A", "C8382T", "A8393G", "G8476C", "C8483T", "C8491A", "T8492A", "T8505C", "G8506A", "T8507G", "A8516G", "G8526C", "T8568C", "A8617G", "T8795G", "G8823A", "T8829A", "C8904A", "A8905T", "A8906G", "A8914G", "G8923T", "C8966T", "A8967G", "G8968A", "-8970G", "-8971C", "-8974T", "-8977G", "-8978C", "-8993C", "-8994C", "G9007T", "A9009G", "T9012C", "A9082G"], "INT": ["K14R", "V201I", "R284G"], "RT-p51": ["T35K", "K122E", "I178L", "T200A", "Q245E", "Q334N", "E344D", "M357L", "A376C", "M377L", "R390K"], "RT-p66": ["T35K", "K122E", "I178L", "T200A", "Q245E", "Q334N", "E344D", "M357L", "A376C", "M377L", "R390K"], "gp120": ["R18K", "T22A", "N66T", "T104-", "-107K", "-109V", "-110T", "-111Y", "-112N", "N113G", "-114T", "K142Q", "N160K", "S161G", "Y163G", "R164K", "L165N", "I166S", "N167S", "T191A", "Y195F", "T216S", "E241R", "E262Q", "D308N", "K309N", "N311T", "Q315H", "G318S", "A322E", "H324Y", "-328R", "K329-", "T334A", "S335P", "R351G", "-368N", "-372G", "-373S", "-374N", "-375S", "-376N", "-377S", "-385T", "A412E", "L424I", "-433K", "T437E", "V468I"], "gp41": ["V7A", "A14L", "I24V", "L54M", "K77R", "D109E", "D113Q", "M118L", "Q119E", "K144R", "N160S", "S165T", "I171L", "S205L", "I264L", "L265S", "R277S", "G293C", "N320Y", "I321L", "F340L"], "nef": ["G3S", "W5L", "S9K", "P14S", "S45T", "A50E", "C55Q", "K92R", "D161N", "C163S", "Q188M", "H191R", "R194M"], "p17": ["G11E", "K18R", "E42D", "D55Q", "L75I", "F79Y", "G91E", "M115T", "E122-"], "p24": ["L6M", "T171V", "T178S", "T200I", "R203K", "A204G", "P207S", "S210T"], "p6": ["F17T", "E21P", "T23A", "A25P", "P26A", "K27E", "-35A", "P37-"], "p7": ["I12T"], "pro": ["K41R", "Q61E"], "rev": ["A11E", "I18T", "S54K", "S56G", "T62A", "H82S", "G111V", "S112F"], "tat": ["M1T", "K19A", "K40N", "S57R", "N67D", "K71E"], "vif": ["R19K", "K36N", "H48N", "I87V", "R92G", "Y110H", "N140S", "R158K", "I159T", "K160R", "K167Q", "R173K", "K179R", "R183H"], "vpr": ["T49H", "T59A", "I60L", "I63L", "I70V"], "vpu": ["L2S", "Y27F", "L33I", "K35R", "L42V", "E58D", "L82V"]}, "labels": {"aa": "INT: K14R, V201I, R284G; RT-p51: T35K, K122E, I178L, T200A, Q245E, Q334N, E344D, M357L, A376C, M377L, R390K; RT-p66: T35K, K122E, I178L, T200A, Q245E, Q334N, E344D, M357L, A376C, M377L, R390K; gp120: R18K, T22A, N66T, T104-, -107K, -109V, -110T, -111Y, -112N, N113G, -114T, K142Q, N160K, S161G, Y163G, R164K, L165N, I166S, N167S, T191A, Y195F, T216S, E241R, E262Q, D308N, K309N, N311T, Q315H, G318S, A322E, H324Y, -328R, K329-, T334A, S335P, R351G, -368N, -372G, -373S, -374N, -375S, -376N, -377S, -385T, A412E, L424I, -433K, T437E, V468I; gp41: V7A, A14L, I24V, L54M, K77R, D109E, D113Q, M118L, Q119E, K144R, N160S, S165T, I171L, S205L, I264L, L265S, R277S, G293C, N320Y, I321L, F340L; nef: G3S, W5L, S9K, P14S, S45T, A50E, C55Q, K92R, D161N, C163S, Q188M, H191R, R194M; p17: G11E, K18R, E42D, D55Q, L75I, F79Y, G91E, M115T, E122-; p24: L6M, T171V, T178S, T200I, R203K, A204G, P207S, S210T; p6: F17T, E21P, T23A, A25P, P26A, K27E, -35A, P37-; p7: I12T; pro: K41R, Q61E; rev: A11E, I18T, S54K, S56G, T62A, H82S, G111V, S112F; tat: M1T, K19A, K40N, S57R, N67D, K71E; vif: R19K, K36N, H48N, I87V, R92G, Y110H, N140S, R158K, I159T, K160R, K167Q, R173K, K179R, R183H; vpr: T49H, T59A, I60L, I63L, I70V; vpu: L2S, Y27F, L33I, K35R, L42V, E58D, L82V"}}}, {"name": "KF835534", "node_attrs": {"div": 0.15471999999999997, "accession": "KF835534", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN355"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G224A", "A278G", "A410G", "G413A", "A418G", "C435T", "A500C", "G603T", "T662C", "A666T", "T667G", "C679T", "A680G", "C688A", "G701-", "G702-", "G703-", "A704-", "-711G", "-712A", "-713G", "-714A", "G717A", "C747G", "T748C", "C749T", "T767C", "T902C", "T992G", "G1005C", "A1112G", "C1229T", "A1307G", "T1322C", "G1450A", "A1461G", "A1588G", "A1712T", "-1729T", "-1730G", "-1731A", "G1760A", "A1766G", "G1804A", "C1826A", "T1828G", "A1982G", "C1986A", "T1987G", "A2018G", "G2182A", "T2209C", "G2210A", "T2269A", "C2301G", "C2326T", "C2419T", "T2579A", "C2671T", "A2716G", "C2749T", "T2824C", "T2845G", "A2875G", "A2884G", "G2925A", "A2962G", "C2968A", "G3004A", "T3040G", "A3079G", "G3091A", "G3154A", "A3247G", "A3379G", "A3449T", "T3496C", "C3499A", "C3504A", "A3508C", "G3532A", "C3610T", "G3685A", "G3737A", "T3754C", "G3756A", "T3976C", "T3977C", "C4021A", "G4027A", "A4114C", "A4181C", "A4183C", "T4405A", "C4608A", "T4679C", "G4689A", "T4694G", "C4754A", "T4827C", "A4870G", "T4976C", "C5019T", "T5028C", "A5082G", "G5140A", "A5267G", "A5272G", "T5311C", "T5319A", "G5336A", "A5426G", "G5431A", "C5448A", "A5495C", "C5508A", "T5584C", "G5614A", "A5622T", "-5626G", "-5627T", "-5628A", "T5670A", "A5685G", "T5704C", "T5727C", "A5824C", "A5825G", "A5830G", "T5850C", "T5857C", "G5858A", "G5862A", "G5865A", "C5911T", "G5935A", "T6024C", "A6026C", "T6076G", "C6097T", "A6119G", "G6158A", "A6160T", "-6165C", "A6167G", "A6174T", "A6177G", "T6178G", "T6187C", "A6189G", "-6195G", "-6196A", "-6198C", "-6200T", "-6201G", "-6202C", "-6203T", "-6204G", "-6205G", "-6206G", "-6207A", "-6208T", "-6209C", "-6210T", "-6211A", "-6212C", "-6213A", "-6214A", "-6215T", "-6216G", "-6217G", "-6218G", "-6219A", "-6220G", "-6221C", "-6222A", "-6223T", "-6224G", "-6225C", "-6226A", "C6247T", "C6252T", "T6263G", "A6265G", "G6274A", "A6278G", "A6288C", "T6307G", "A6319C", "T6335A", "T6340C", "A6395T", "A6413C", "C6441T", "A6458G", "A6462C", "G6463A", "C6465T", "A6466G", "C6483A", "C6488A", "T6490G", "G6498C", "A6502G", "G6577C", "A6648C", "G6653A", "T6654C", "A6684C", "C6774G", "T6778G", "A6785C", "G6801A", "A6811G", "A6849C", "A6850C", "G6871A", "G6947A", "C6955G", "-6956T", "-6957C", "-6958T", "-6968T", "-6969A", "-6970C", "-6972T", "-6973G", "A6974C", "-6977A", "-6979T", "-6980G", "-6981G", "-6982T", "-6983A", "-6998G", "-6999G", "-7000A", "-7001A", "-7002C", "-7003A", "-7004A", "-7005A", "-7006C", "C7018T", "G7033A", "A7108G", "C7124T", "A7129C", "A7152G", "-7153A", "-7156T", "G7198A", "A7244C", "G7268A", "G7309A", "A7390G", "T7400C", "G7440A", "A7542G", "C7574G", "C7576T", "C7606T", "C7625T", "A7627T", "G7628A", "G7677A", "A7732G", "A7735C", "A7744G", "G7764A", "T7765A", "A7771C", "A7773G", "G7790A", "C7926T", "G7936A", "G7947A", "A8055G", "G8130A", "C8131G", "C8210T", "A8219T", "C8220T", "G8243A", "T8257C", "G8273A", "A8295G", "A8297G", "T8366A", "G8432A", "T8440C", "A8461G", "A8465G", "T8505A", "T8597G", "A8643G", "T8711C", "A8726G", "G8729A", "A8780G", "A8801G", "A8804G", "G8808A", "C8813T", "A8837G", "A8906T", "G8917C", "G8923A", "C8930T", "C8934T", "C8966-", "A8967C", "-8970A", "-8971A", "-8974G", "-8977A", "-8978G", "-8994G", "C9006G", "T9068C"], "INT": ["M84I", "K136H", "A278D"], "RT-p51": ["D39N", "T69S", "C162S", "D250E", "R277K", "D291E", "H315Q"], "RT-p66": ["D39N", "T69S", "C162S", "D250E", "R277K", "D291E", "H315Q", "T470N", "E471D", "V548I", "S554N"], "gp120": ["V2M", "G3E", "G4E", "V57A", "M58L", "D74E", "K89E", "E102N", "-105D", "-106V", "-107I", "N108R", "-109N", "-110G", "-111S", "-112S", "-114R", "A133V", "L137V", "K142E", "Y145S", "-157D", "N158D", "D159E", "T181S", "I187L", "A196V", "N202D", "K203T", "T204M", "P210Q", "Q212K", "S215T", "E241G", "E265A", "V267T", "K277T", "A307G", "D308E", "N311H", "R316K", "K332T", "G365S", "-368M", "T371-", "N432K", "-433R", "T436N", "K464Q", "G472R"], "gp41": ["R46K", "Q80R", "L91V", "Q108Y", "D109T", "S125N", "K144S", "S154K", "K156N", "N157S", "D163N", "T208I", "G215E", "N251S", "R276Q", "T306F", "G314R", "G324R", "N331S", "I332V"], "nef": ["S8R", "V33A", "H40R", "C55S", "F85L", "I101V", "A156T", "Q188H", "R192T", "R194K"], "p17": ["H28R", "A90S", "I111C", "A118E", "-124I", "-125S", "V128-", "S129-"], "p2": ["-7T", "T8N", "S10A", "A11V", "I13-"], "p24": ["L6A", "H87Q", "A92P"], "p6": ["F17L", "-18P", "-19T", "K27R", "R42K", "L50W"], "p7": ["K41R"], "pro": ["L10M", "I62V", "P63Q", "T74A"], "rev": ["E30K", "Q95E"], "tat": ["Q17R", "N24K", "K40T", "S70P", "P73S", "R76Q", "D80N"], "vif": ["L8M", "A35T", "H56Q", "N95S", "I166V", "G185E"], "vpr": ["T55A", "F72Y"], "vpu": ["D3N", "A5D", "-7G", "A8L", "V9A", "G10V", "N73R", "R75G"]}, "labels": {"aa": "INT: M84I, K136H, A278D; RT-p51: D39N, T69S, C162S, D250E, R277K, D291E, H315Q; RT-p66: D39N, T69S, C162S, D250E, R277K, D291E, H315Q, T470N, E471D, V548I, S554N; gp120: V2M, G3E, G4E, V57A, M58L, D74E, K89E, E102N, -105D, -106V, -107I, N108R, -109N, -110G, -111S, -112S, -114R, A133V, L137V, K142E, Y145S, -157D, N158D, D159E, T181S, I187L, A196V, N202D, K203T, T204M, P210Q, Q212K, S215T, E241G, E265A, V267T, K277T, A307G, D308E, N311H, R316K, K332T, G365S, -368M, T371-, N432K, -433R, T436N, K464Q, G472R; gp41: R46K, Q80R, L91V, Q108Y, D109T, S125N, K144S, S154K, K156N, N157S, D163N, T208I, G215E, N251S, R276Q, T306F, G314R, G324R, N331S, I332V; nef: S8R, V33A, H40R, C55S, F85L, I101V, A156T, Q188H, R192T, R194K; p17: H28R, A90S, I111C, A118E, -124I, -125S, V128-, S129-; p2: -7T, T8N, S10A, A11V, I13-; p24: L6A, H87Q, A92P; p6: F17L, -18P, -19T, K27R, R42K, L50W; p7: K41R; pro: L10M, I62V, P63Q, T74A; rev: E30K, Q95E; tat: Q17R, N24K, K40T, S70P, P73S, R76Q, D80N; vif: L8M, A35T, H56Q, N95S, I166V, G185E; vpr: T55A, F72Y; vpu: D3N, A5D, -7G, A8L, V9A, G10V, N73R, R75G"}}}]}]}]}, {"name": "CRF08_BC_NODE_0000012", "node_attrs": {"div": 0.11724, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["-281C", "C3405T", "G4027A", "A4684G", "C5579T", "G6773A", "G6947A", "-6957T", "-6977A", "G7150A", "A7155C", "A7269C", "T8213G", "A8746T"], "INT": ["M84I"], "RT-p51": ["A437V"], "RT-p66": ["A437V"], "gp120": ["E307K", "G365S", "-368F", "T436D", "E472A"], "gp41": ["F304V"], "p2": ["S10-"], "vif": ["K33R"]}, "labels": {"aa": "INT: M84I; RT-p51: A437V; RT-p66: A437V; gp120: E307K, G365S, -368F, T436D, E472A; gp41: F304V; p2: S10-; vif: K33R"}}, "children": [{"name": "CRF08_BC_NODE_0000013", "node_attrs": {"div": 0.12115999999999999, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G361A", "C419T", "C435A", "A518G", "-699A", "-700C", "A1904G", "A2179G", "C2419T", "T2542G", "A3816G", "A4766G", "A4845G", "T5616G", "T5684C", "G6158A", "A6189G", "T6193A", "-6196T", "-6200A", "-6206A", "T6261A", "A6576G", "A6781G", "G6935A", "G6936A", "C6937A", "-6987A", "-6992A", "-6993C", "-6995A", "-6996A", "-6998G", "-7000T", "-7001A", "A7375G", "G7440A", "A7641G", "G7962A", "A7996C", "A7997G", "T8097C", "G8738A", "G8762A", "G8923T"], "INT": ["E11D", "K14R"], "RT-p51": ["D291E"], "RT-p66": ["D291E"], "gp120": ["N108-", "G361K"], "gp41": ["R46K", "D113G", "T165S", "G220E", "K231N", "L265S"], "p17": ["R9K", "L34I", "I61M"], "pro": ["I36V"], "tat": ["E85K"], "vif": ["I87V"], "vpu": ["V26A"]}, "labels": {"aa": "INT: E11D, K14R; RT-p51: D291E; RT-p66: D291E; gp120: N108-, G361K; gp41: R46K, D113G, T165S, G220E, K231N, L265S; p17: R9K, L34I, I61M; pro: I36V; tat: E85K; vif: I87V; vpu: V26A"}}, "children": [{"name": "KF835531", "node_attrs": {"div": 0.14775, "accession": "KF835531", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN350"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G224A", "A286G", "A386G", "C482T", "T495G", "A507C", "T593C", "A614C", "C618A", "T646C", "C1060G", "T1121C", "T1166C", 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"C6855A", "A6856T", "C6862A", "T6953C", "-6956A", "T6957A", "A6959-", "A6960-", "T6961-", "G6962-", "G6963-", "T6964-", "A6965-", "C6966-", "A6967-", "-6972G", "-6973T", "T6976A", "A6977C", "-6979C", "-6980A", "-6981T", "-6982G", "-6983T", "C6984T", "A6985T", "-6986A", "-6988T", "-6989G", "-6990A", "-6991T", "-6994A", "-6997A", "-6999A", "-7002A", "-7003T", "-7004T", "-7005C", "-7006C", "-7007T", "-7008C", "-7009A", "C7014T", "A7094T", "C7101A", "A7102C", "A7107C", "C7124A", "A7149G", "-7153A", "A7154G", "C7155A", "-7156G", "T7217C", "A7245G", "G7268C", "A7296G", "G7492A", "G7628A", "A7630T", "T7636C", "T7642A", "A7668G", "G7677A", "A7733C", "A7782G", "C7792T", "A7818G", "C7929T", "A7964G", "A7992G", "C7998T", "C8005A", "A8019G", "A8032G", "C8065T", "A8076G", "G8085A", "A8110G", "G8113A", "A8236C", "T8251C", "A8261G", "C8263T", "A8409G", "A8413G", "G8414A", "A8441G", "C8451T", "A8459T", "A8573G", "T8585C", "A8594G", "G8660A", "A8793G", "G8795A", "G8945C", "G8955A", "C9006G", "G9026A"], "INT": ["S24N", "G82S", "K269R"], "RT-p51": ["G45E", "E138A", "E203K", "R206K", "T359A"], "RT-p66": ["G45E", "E138A", "E203K", "R206K", "T359A", "K465R", "I484L"], "gp120": ["K18R", "E59G", "H77N", "E102K", "T104-", "N113-", "-122E", "-123K", "-124E", "L136E", "L137V", "K140R", "K142N", "K143S", "Y145F", "I153V", "-157D", "N158G", "D159K", "H212Q", "A238S", "E241G", "A253V", "V267N", "I279V", "D294E", "D297N", "H302Y", "S306N", "-308T", "N311T", "A322I", "N327D", "-328K", "T330I", "T334N", "Y367H", "-370D", "-372K", "-373D", "-374N", "-383S", "-384S", "-385E", "T387I", "N414Y", "T416N", "K418T", "L424I", "N432R", "-433T", "N434E", "K464R", "A472P", "E481G"], "gp41": ["I24M", "D109N", "K122R", "S125N", "K144Q", "N160S", "K172R", "P209L", "R221G", "D230G", "T232V", "N239S", "H258R", "R261K", "N320D"], "nef": ["T23A", "E24G", "K39N", "Y135F", "R151G", "R194M", "E201D", "D205N"], "p17": ["S54A", "K58Q", "E93D", "I104T"], "p2": ["-7T", "T8H", "I13V", "M14L"], "p24": ["T110S", "S210T"], "p6": ["P24S", "P26R"], "pro": ["K41R", "G48E", "Q61D", "M89L"], "rev": ["K39R", "H53N", "T62A", "L73F", "G89S"], "tat": ["R29L"], "vif": ["I31V", "N95T", "E99D", "G101S", "K160R", "I166V", "K167Q", "G182D", "N186S"], "vpr": ["I63M", "I70V", "V84M"], "vpu": ["D3K", "A5D", "-7G", "A8L", "V9A", "G10V", "V14I", "L82V"]}, "labels": {"aa": "INT: S24N, G82S, K269R; RT-p51: G45E, E138A, E203K, R206K, T359A; RT-p66: G45E, E138A, E203K, R206K, T359A, K465R, I484L; gp120: K18R, E59G, H77N, E102K, T104-, N113-, -122E, -123K, -124E, L136E, L137V, K140R, K142N, K143S, Y145F, I153V, -157D, N158G, D159K, H212Q, A238S, E241G, A253V, V267N, I279V, D294E, D297N, H302Y, S306N, -308T, N311T, A322I, N327D, -328K, T330I, T334N, Y367H, -370D, -372K, -373D, -374N, -383S, -384S, -385E, T387I, N414Y, T416N, K418T, L424I, N432R, -433T, N434E, K464R, A472P, E481G; gp41: I24M, D109N, K122R, S125N, K144Q, N160S, K172R, P209L, R221G, D230G, T232V, N239S, H258R, R261K, N320D; nef: T23A, E24G, K39N, Y135F, R151G, R194M, E201D, D205N; p17: S54A, K58Q, E93D, I104T; p2: -7T, T8H, I13V, M14L; p24: T110S, S210T; p6: P24S, P26R; pro: K41R, G48E, Q61D, M89L; rev: K39R, H53N, T62A, L73F, G89S; tat: R29L; vif: I31V, N95T, E99D, G101S, K160R, I166V, K167Q, G182D, N186S; vpr: I63M, I70V, V84M; vpu: D3K, A5D, -7G, A8L, V9A, G10V, V14I, L82V"}}}, {"name": "KF835547", "node_attrs": {"div": 0.14701999999999998, "accession": "KF835547", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN371"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A180T", "A362G", "A388G", "T473C", "G562A", "T571A", "G607A", "C641T", "A675C", "A678G", "G687A", "G818A", "C893A", "A977G", "T992G", "C1182T", "G1354C", "T1358C", "C1491T", "C1714T", "-1729T", "-1730C", "-1731G", "-1732G", "-1733G", "-1734G", "T1735A", "C1736G", "G1737-", "A1738-", "G1739-", "G1740-", "A1741-", "G1742-", "T1754C", "C1756T", "C1775G", "G1819A", 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"-373M", "-374T", "-375N", "-376D", "-377T", "-378D", "-379M", "-380T", "-381N", "-382V", "-383T", "-384E", "-385G", "A412E", "-433D", "N434T", "N435S", "T439I", "D446N", "A472T"], "gp41": ["A15T", "I24L", "E49G", "D109E", "E110D", "N129G", "T130L", "R133N", "D137E", "N166K", "I193V", "P209H", "D217G", "T232A", "F255Y", "R259L", "F263L", "I264L", "T267I", "R277S", "L294Q", "A300T", "V304I", "V322I", "G324V", "F340L", "Q345L"], "nef": ["G3N", "S8R", "V33A", "I43V", "G83A", "Y135L", "V180I", "H191R", "R194L"], "p17": ["K18R", "R76K", "F79Y", "G91E", "K114Q", "T115A", "A118T"], "p2": ["-10S"], "p24": ["H87Q", "G208A"], "p6": ["A12V", "-18G", "-19E", "E20-", "E21-", "P26L", "K31-", "D32-", "R33K", "-35R", "-36E", "S47N"], "p7": ["P9S"], "rev": ["H82T", "G88R"], "tat": ["K19E", "Y26F", "N67D", "L74I", "T82A"], "vif": ["V7A", "R63K", "N95S", "I98L", "M109L", "I128V", "R183H"], "vpr": ["P37V", "T59V"], "vpu": ["D3E", "V21I", "R73H"]}, "labels": {"aa": "INT: I31V, Q42K, A124T, I161L; RT-p51: K122E, C162S, E169D, T286A, Y342F; RT-p66: K122E, C162S, E169D, T286A, Y342F, T450S; gp120: H77Q, Q86E, E102N, -111N, -112V, -114K, -115S, -116V, -117S, -118S, -119T, -120T, -121A, -122S, -123S, -124N, A133T, L136Y, R138K, K142E, L156I, D159G, N160S, T181N, T191A, K199Q, H212S, T216S, E241R, I243V, T250E, N251E, S263P, N311Y, Q315K, R316N, V317I, K320E, H324R, F325Y, -328R, K329-, K332N, -370G, -372D, -373M, -374T, -375N, -376D, -377T, -378D, -379M, -380T, -381N, -382V, -383T, -384E, -385G, A412E, -433D, N434T, N435S, T439I, D446N, A472T; gp41: A15T, I24L, E49G, D109E, E110D, N129G, T130L, R133N, D137E, N166K, I193V, P209H, D217G, T232A, F255Y, R259L, F263L, I264L, T267I, R277S, L294Q, A300T, V304I, V322I, G324V, F340L, Q345L; nef: G3N, S8R, V33A, I43V, G83A, Y135L, V180I, H191R, R194L; p17: K18R, R76K, F79Y, G91E, K114Q, T115A, A118T; p2: -10S; p24: H87Q, G208A; p6: A12V, -18G, -19E, E20-, E21-, P26L, K31-, D32-, R33K, -35R, -36E, S47N; p7: P9S; rev: H82T, G88R; tat: K19E, Y26F, N67D, L74I, T82A; vif: V7A, R63K, N95S, I98L, M109L, I128V, R183H; vpr: P37V, T59V; vpu: D3E, V21I, R73H"}}}]}, {"name": "CRF08_BC_NODE_0000014", "node_attrs": {"div": 0.11837, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A694C", "C697-", "G701-", "G702-", "G703-", "A704-", "T5727C", "G6638C", "C6955G", "-6979A", "-6981G", "A7734G", "T7796A"], "gp120": ["D74N", "E262Q"], "gp41": ["K144R"], "p17": ["E120A"], "p2": ["T8N"], "rev": ["G88R"]}, "labels": {"aa": "gp120: D74N, E262Q; gp41: K144R; p17: E120A; p2: T8N; rev: G88R"}}, "children": [{"name": "CRF08_BC_NODE_0000015", "node_attrs": {"div": 0.12140000000000001, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["-709G", "-710C", "A1568G", "A1709G", "G1846A", "A2956G", "C3577T", "C4079T", "T4129C", "T4742C", "A5065G", "G5355A", "G5431A", "T5466C", "A5621C", "C5653T", "A6044G", "A6194-", "A6395T", "-6968T", "-6969A", "-6970C", "-6972T", "-6973G", "-6980G", "-7009C", "A7149C", "C7152A", "T7876C", "G7952A", "A7953G", "G8201A", "A8219G"], "RT-p51": ["T286A"], "RT-p66": ["T286A"], "gp120": ["N64D", "T104-", "-107K", "-109V", "T181S", "-433N", "D436E"], "gp41": ["D217S", "T306A"], "rev": ["R35K"], "tat": ["T82A"], "vif": ["K36N", "F39V", "K160R"], "vpr": ["V84M"], "vpu": ["L16F"]}, "labels": {"aa": "RT-p51: T286A; RT-p66: T286A; gp120: N64D, T104-, -107K, -109V, T181S, -433N, D436E; gp41: D217S, T306A; rev: R35K; tat: T82A; vif: K36N, F39V, K160R; vpr: V84M; vpu: L16F"}}, "children": [{"name": "KF835541", "node_attrs": {"div": 0.14679, "accession": "KF835541", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN363"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A286G", "C426T", "T467C", "G491A", "A518G", "C572T", "A576T", "A585G", "C586T", "C618A", "C635T", "A675G", "G686A", "G687A", "C688A", "A691C", "G695A", "-697G", "T698C", "-699A", 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"vpu": ["V26A", "R73N", "D81N"]}, "labels": {"aa": "INT: I31V, A124N, Q136H, I161L, V165I, A278D; RT-p51: K104R, T200A, D291E, H315Q, T359A, K366R; RT-p66: K104R, T200A, D291E, H315Q, T359A, K366R; gp120: G3R, V57F, E59A, E102T, -110S, -111S, -112R, -114Y, -115S, -116D, -120I, -121E, -122S, -123V, -124K, L136V, L137V, R138K, K142E, K143E, V144M, N160K, S161N, Y195F, I197L, N202D, K203E, E240G, I243M, A253V, S263P, Q287H, T288S, K307E, -308N, K309R, N311K, R316N, A322V, P326H, K332I, T334A, -370D, -372Y, -373M, -374T, -375E, -376G, -377D, -378L, -383S, -384S, -385V, K418R, V427E, N432V, N434S, N435S, E436G, D449N, V468I, A472P; gp41: V2A, D109G, D113E, R144E, N160S, S205L, I235V, S256L, H258R, R259L, T267I, R277S, E280G, A300T, A306V, N320S, G324R, C326Y, R330C; nef: I10L, E24D, A53N, F81Y, Y120F, Q125D, P150Q, R151K, N157T, N161D; p17: I61M, T81S, T84V, K114E, A118K, K119T; p2: N8T, -10S, M14L; p6: K27R, P30A, K31R, S47N; pro: P63S; rev: A11E, R50N, H53R, Q74P; tat: V4I, K40T, S57R, A58T, D64N, L68P; vif: L8M, H48N, L59V, R63K, N140-, K167Q, N190S; vpr: S94N; vpu: V26A, R73N, D81N"}}}, {"name": "CRF08_BC_NODE_0000016", "node_attrs": {"div": 0.12406, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G224A", "T495G", "C1137T", "G1450A", "A1781G", "G2221A", "A4333G", "T4652C", "A5279G", "G5620T", "T5623G", "-5626T", "-5627T", "-5628A", "G5935A", "T6178C", "A6197-", "T6199-", "G6280T", "G6653A", "A6974T", "C6975T", "-6986A", "-6987A", "-6991T", "-6992A", "-6993C", "-6994A", "-7007A", "T7162A", "G7705A", "C7929T", "C7998A", "C8202T", "C8483T", "A8793G", "G8864T"], "gp120": ["-110T", "-111N", "N113-"], "gp41": ["P209L", "T232N", "A300I"], "nef": ["E174D"], "p17": ["S54A"], "vpr": ["T59A"], "vpu": ["L6S", "A8L", "V9A", "G10V"]}, "labels": {"aa": "gp120: -110T, -111N, N113-; gp41: P209L, T232N, A300I; nef: E174D; p17: S54A; vpr: T59A; vpu: L6S, A8L, V9A, G10V"}}, "children": [{"name": "KF835493", "node_attrs": {"div": 0.14621, "accession": "KF835493", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN302"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A214G", "A379C", "A500C", "G509A", "A512G", "C540A", "A548G", "G562A", "G603T", "A614G", "C641T", "T662C", "A678C", "C679A", "A680G", "C684G", "A685C", "G686A", "G687A", "C688A", "A690G", "A692G", "G695T", "T698-", "-711G", "-712G", "-713G", "-714A", "A730T", "G740A", "C774A", "A806G", "T1143C", "A1242T", "C1243G", "G1354C", "G1355A", "A1442C", "A1443G", "C1459A", "T1482G", "A1701T", "C1706T", "A1772G", "G1852A", "A1903G", "A2018G", "G2117A", "A2154G", "A2216C", "C2301A", "A2459G", "G2462A", "A2524G", "A2551G", "A2557G", "C2575T", "T2632C", "A2725G", "A2727G", "G2728A", "T2737C", "C2831T", "A2969G", "G2972A", "A2980G", "G3044A", "T3068C", "C3100A", "A3136G", "G3214A", "A3238C", "A3449T", "A3481G", "C3500T", "G3891A", "A3900G", "T3943C", "T3977C", "A4078G", "G4335A", "A4338G", "T4691C", "T4703G", "C4721T", "G4737A", "A4968G", "C5043T", "A5121G", "A5159G", "C5162A", "A5164G", "G5185A", "A5233G", "A5236G", "T5281A", "C5530T", "C5547A", "G5556A", "A5575G", "A5581G", "T5624C", "T5653A", "G5668A", "A5689G", "A5712G", "A5718C", "A5825G", "C5884T", "A5907G", "T5951C", "A6020T", "A6061G", "G6074A", "-6165A", "A6174C", "A6176T", "G6179A", "A6182G", "T6184G", "G6186C", "T6187C", "A6188T", "C6256A", "A6275C", "A6276C", "A6282G", "A6329G", "A6333G", "A6338G", "G6380T", "C6483A", "A6502G", "A6520G", "C6638G", "T6654C", "C6721T", "A6775G", "G6776A", "T6778A", "A6781T", "A6786C", "A6798G", "G6801A", "A6823G", "A6850C", "T6946C", "C6951G", "G6955C", "-6956A", "A6979T", "-6982T", "-6983A", "-6988T", "-6989G", "-6990G", "-6995G", "-6996A", "-6997A", "-6998G", "-6999G", "-7000T", "-7001A", "-7002A", "-7003T", "-7004T", "-7005C", "-7006A", "-7008G", "A7010T", "C7089A", "T7114C", "T7134C", "T7138A", "-7153T", "A7154G", "C7155A", "-7156T", "A7158C", "T7159A", "A7163-", "C7164-", "A7165-", "C7170T", "A7225G", "A7240G", "A7241G", "A7399G", "C7463A", "C7603T", "G7640A", "A7676G", "G7677A", "T7678C", "G7701A", "A7744G", "A7782G", "G7790A", "A7818G", "G7947A", "G7961A", "A7997G", "C8038G", "A8055G", "A8110G", "G8144A", "G8188A", "G8213T", "T8223C", "A8261G", "G8273A", "G8327A", "A8409G", "G8436A", "A8469G", "T8558C", "T8676C", "T8746A", "C8747T", "T8756C", "G8794A", "G8814A", "T8829A", "T8831C", "G8875A", "A8914G", "G8923T"], "INT": ["S39N", "Q42R", "I101M", "R187K", "K188R"], "RT-p51": ["V8I", "K20R", "M41L", "T69N", "K122E", "D123N", "K211R", "I292V", "V293I", "A317T", "D335E"], "RT-p66": ["V8I", "K20R", "M41L", "T69N", "K122E", "D123N", "K211R", "I292V", "V293I", "A317T", "D335E", "I452L"], "gp120": ["K18R", "Y33H", "I56L", "K141P", "K142N", "K143R", "N160E", "A176S", "P210Q", "Q262E", "V267T", "-308K", "K309N", "N311T", "Q315R", "R316K", "K332N", "T366R", "-370G", "-372E", "-373V", "-378N", "-379G", "-380T", "-381E", "-382G", "-383N", "-384S", "-385S", "I386F", "A412E", "V427A", "N432T", "N434D", "N435T", "T437-", "T439I", "I463V"], "gp41": ["L54M", "D109E", "D113N", "S125D", "R133K", "N160S", "D163N", "K172R", "G215E", "G220R", "N232D", "N251S", "A281T", "V304F", "I307T", "N320D", "G324R", "A342T"], "nef": ["T23A", "A32T", "I43V", "R151E", "E158K", "C163S", "R178K", "H191R", "R194M"], "p17": ["K15T", "E55D", "Q69K", "R76K", "A90S", "T115Q", "Q117A", "A118K", "K119E", "A121G", "E122G", "Y132F"], "p2": ["Q6H", "-7A", "-10N", "T12-"], "p24": ["L15I", "T171C", "G208A"], "p6": ["T8S"], "p7": ["F6V"], "pro": ["T74A"], "rev": ["A11E", "R14K", "R38Q", "L64V", "R88G", "S99N", "A114T"], "tat": ["R52W", "S57R", "N67D", "I69V", "D80N"], "vif": ["V39L", "V51I", "I128V", "K179E", "H192Q", "*193W"], "vpr": ["E6G", "T19A", "L20M"], "vpu": ["A5D", "-7A", "F16I", "V21I", "I28V", "R37S"]}, "labels": {"aa": "INT: S39N, Q42R, I101M, R187K, K188R; RT-p51: V8I, K20R, M41L, T69N, K122E, D123N, K211R, I292V, V293I, A317T, D335E; RT-p66: V8I, K20R, M41L, T69N, K122E, D123N, K211R, I292V, V293I, A317T, D335E, I452L; gp120: K18R, Y33H, I56L, K141P, K142N, K143R, N160E, A176S, P210Q, Q262E, V267T, -308K, K309N, N311T, Q315R, R316K, K332N, T366R, -370G, -372E, -373V, -378N, -379G, -380T, -381E, -382G, -383N, -384S, -385S, I386F, A412E, V427A, N432T, N434D, N435T, T437-, T439I, I463V; gp41: L54M, D109E, D113N, S125D, R133K, N160S, D163N, K172R, G215E, G220R, N232D, N251S, A281T, V304F, I307T, N320D, G324R, A342T; nef: T23A, A32T, I43V, R151E, E158K, C163S, R178K, H191R, R194M; p17: K15T, E55D, Q69K, R76K, A90S, T115Q, Q117A, A118K, K119E, A121G, E122G, Y132F; p2: Q6H, -7A, -10N, T12-; p24: L15I, T171C, G208A; p6: T8S; p7: F6V; pro: T74A; rev: A11E, R14K, R38Q, L64V, R88G, S99N, A114T; tat: R52W, S57R, N67D, I69V, D80N; vif: V39L, V51I, I128V, K179E, H192Q, *193W; vpr: E6G, T19A, L20M; vpu: A5D, -7A, F16I, V21I, I28V, R37S"}}}, {"name": "KF835507", "node_attrs": {"div": 0.1495, "accession": "KF835507", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN320"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A286G", "C419T", "C426T", "A530C", "A569G", "T571A", "A578G", "G607A", "G612C", "G693A", "C694A", "-697T", "-699A", "-700C", "-701T", "-702G", "-703A", "-704C", "-705G", "-706A", "-707G", "-708A", "G709A", "A715-", "G716-", "C773T", "C774T", "T978G", "A1001G", "G1002C", "T1003C", "A1049G", "C1098G", "C1229T", "T1359A", "A1400G", "C1409T", "A1449C", "T1451G", "A1461G", "T1481C", "A1487G", "G1543A", "C1749T", "C1767G", "-1782C", "-1783C", "-1784C", "-1785T", "-1786A", "-1787C", "T1796C", "G1819A", "A1851T", "A1853G", "A1904G", "A2012G", "G2173A", "G2182A", "A2190G", "T2212A", "A2389G", "C2419T", "G2498A", "G2518A", "A2578G", "T2579A", "C2635T", "T2650C", "C2671T", "A2707G", "T2719C", "C2828A", "C2968A", "A3007G", "C3045T", "A3062G", "G3070A", "A3116G", "G3125A", "T3139C", "G3188A", "C3307A", "T3346C", "C3376T", "G3385A", "A3489G", "A3491G", "T3496C", "G3685A", "T3778C", "A3795G", "G3825A", "C3826T", "C3899A", "T3962C", "A3988G", "A4027G", "G4145A", "C4146A", "T4165C", "T4190C", "C4234T", "T4405A", "G4407A", "A4417G", "T4428C", "T4537C", "A4664G", "T4701G", "G4767A", "G4769A", "A5042C", "G5153C", "G5225A", "T5237C", "A5293G", "T5314C", "G5336T", "C5398T", "C5442T", "T5457C", "C5461T", "T5579C", "T5584C", "G5614A", "T5624G", "A5655C", "A5665G", "G5706A", "A5718G", "T5728C", "T5731C", "A5737C", "G5784A", "C5824A", "T5850A", "A5911T", "G5948T", "-6165G", "A6166T", "G6170T", "T6171A", "T6172C", "C6175T", "A6180G", "G6183A", "A6185G", "A6189C", "C6190T", "G6251A", "G6267A", "A6273G", "A6278G", "A6288C", "A6323G", "A6327G", "T6340C", "A6430G", "A6461G", "C6487T", "C6488T", "T6551C", "A6573G", "T6654A", "A6655T", "C6670T", "A6679G", "A6751G", "T6778G", "A6809G", "C6826T", "A6848C", "C6855A", "A6856C", "T6857G", "C6895T", "A6947G", "-6956C", "T6957C", "A6971G", "-6982A", "-6983T", "-6988C", "-6989A", "-6990T", "-7008C", "C7012T", "A7016C", "C7096A", "A7129G", "A7147T", "A7151G", "-7153G", "-7156A", "G7160A", "C7174T", "G7181C", "G7182A", "G7256A", "C7269G", "A7270G", "G7369A", "A7390G", "T7400C", "G7440A", "G7450T", "A7517G", "A7522G", "A7533G", "A7577G", "T7604A", "C7605T", "G7628C", "C7714A", "A7722C", "A7750G", "A7796T", "T7801A", "T7916C", "G7944A", "A8019G", "C8038A", "G8113A", "G8136T", "A8264C", "A8276G", "T8298C", "A8311C", "G8349A", "G8350A", "G8354A", "A8403G", "G8404C", "T8440C", "A8458G", "C8521A", "G8531A", "A8617G", "A8636T", "T8640A", "A8642G", "G8738A", "C8809A", "A8967T", "-8970G", "-8971A", "-8972T", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A", "-8994G", "C9006G", "T9029-", "-9033G"], "INT": ["K7R", "S17N", "Q42K", "I84M", "A124N", "F139L", "R211K", "I218T"], "RT-p51": ["K32R", "D39E", "V135I", "C162S", "Q245K", "D291E", "A317V", "K323E", "I341V", "E344K", "V365I", "D404E"], "RT-p66": ["K32R", "D39E", "V135I", "C162S", "Q245K", "D291E", "A317V", "K323E", "I341V", "E344K", "V365I", "D404E", "K465R", "I466V"], "gp120": ["E19D", "A32S", "N74D", "-104S", "-105N", "-106A", "K107T", "V109G", "A133T", "R138K", "K140R", "K142D", "Y145S", "-157D", "N158G", "D159K", "K203E", "H212Y", "E240G", "V267N", "-308E", "K319E", "K332Q", "T334N", "S335A", "S365G", "F368R", "-370I", "-385T", "I388L", "N414K", "N432-", "N433S", "E436K", "G443Q", "V468I", "A472G"], "gp41": ["R46K", "E49D", "I72V", "K77R", "I92V", "S101I", "D109Q", "D137E", "N140T", "T165S", "N166K", "S205P", "G214E", "N239S", "G278V", "I321L", "I325V", "I332T"], "nef": ["G3N", "R21A", "V33A", "K39R", "A60E", "K92R", "E98D", "L100M", "Y135F", "R151G", "A156D"], "p17": ["Q65H", "F79Y", "G91E", "E93Q", "A120K", "A121V", "E122T", "K123D", "-124E", "-125N"], "p2": ["-7T", "N9Q", "I13V"], "p24": ["L83V", "V91P", "P123A", "S210T"], "p6": ["P24S", "P30A", "-35P", "-36Y", "S47N"], "p7": ["R26K"], "pro": ["Q18L", "I19V", "I36V", "I72V"], "rev": ["R50K", "L64M", "G89S"], "tat": ["R29C", "L68P", "S70P", "G79R"], "vif": ["E61K", "M189I"], "vpr": ["E17Q", "G41S", "Y45H", "I63M", "Q77H"], "vpu": ["D3N", "-7G", "I20V", "W41R", "K44Q", "R73N", "D81E"]}, "labels": {"aa": "INT: K7R, S17N, Q42K, I84M, A124N, F139L, R211K, I218T; RT-p51: K32R, D39E, V135I, C162S, Q245K, D291E, A317V, K323E, I341V, E344K, V365I, D404E; RT-p66: K32R, D39E, V135I, C162S, Q245K, D291E, A317V, K323E, I341V, E344K, V365I, D404E, K465R, I466V; gp120: E19D, A32S, N74D, -104S, -105N, -106A, K107T, V109G, A133T, R138K, K140R, K142D, Y145S, -157D, N158G, D159K, K203E, H212Y, E240G, V267N, -308E, K319E, K332Q, T334N, S335A, S365G, F368R, -370I, -385T, I388L, N414K, N432-, N433S, E436K, G443Q, V468I, A472G; gp41: R46K, E49D, I72V, K77R, I92V, S101I, D109Q, D137E, N140T, T165S, N166K, S205P, G214E, N239S, G278V, I321L, I325V, I332T; nef: G3N, R21A, V33A, K39R, A60E, K92R, E98D, L100M, Y135F, R151G, A156D; p17: Q65H, F79Y, G91E, E93Q, A120K, A121V, E122T, K123D, -124E, -125N; p2: -7T, N9Q, I13V; p24: L83V, V91P, P123A, S210T; p6: P24S, P30A, -35P, -36Y, S47N; p7: R26K; pro: Q18L, I19V, I36V, I72V; rev: R50K, L64M, G89S; tat: R29C, L68P, S70P, G79R; vif: E61K, M189I; vpr: E17Q, G41S, Y45H, I63M, Q77H; vpu: D3N, -7G, I20V, W41R, K44Q, R73N, D81E"}}}]}]}, {"name": "CRF08_BC_NODE_0000017", "node_attrs": {"div": 0.12085, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G695T", "-697A", "T698C", "-712A", "-713G", "-714A", "A812G", "T1628G", "C2301A", "G3004A", "A3508C", "G3756A", "G3916A", "A4677G", "A5825G", "A6061T", "G6186A", "-6198C", "-6200A", "-6201C", "-6203A", "-6208A", "-6209G", "-6212A", "-6215A", "-6217G", "G6227-", "A6319C", "A6458G", "A6502G", "-7153A", "G7212A", "A8032G", "T8711C", "G8729A", "A8823G"], "RT-p51": ["T69S"], "RT-p66": ["T69S", "E471D", "S554N"], "gp120": ["K69N", "N202D", "F368N", "-370S", "S453N"], "nef": ["N161D"], "rev": ["T62A"], "vif": ["I31V"], "vpu": ["A5E"]}, "labels": {"aa": "RT-p51: T69S; RT-p66: T69S, E471D, S554N; gp120: K69N, N202D, F368N, -370S, S453N; nef: N161D; rev: T62A; vif: I31V; vpu: A5E"}}, "children": [{"name": "CRF08_BC_NODE_0000018", "node_attrs": {"div": 0.12515, "clade_membership": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A690G", "-711A", "T1061C", "A1719G", "A2227G", "C2280T", "G2951A", "G3151A", "G3454A", "C3577T", "C3688T", "A3802G", "G4103A", "A4805G", "A5495C", "G6158A", "-6204G", "-6213T", "-6214G", "-6218G", "T6285A", "A6327G", "G6588A", "A6669G", "A6806G", "A6979T", "-6980G", "-6982T", "-6986A", "-6987A", "-6990A", "-6992A", "A7107G", "A7150T", "A7244C", "G7322A", "G7477T", "G7492A", "A7517C", "T7675C", "C7714A", "C8147A", "T8169C", "G8213T", "T8947A", "-8993C", "-8994C"], "INT": ["V110I"], "RT-p51": ["A62V"], "RT-p66": ["A62V"], "gp120": ["-115S", "V144E", "R245K", "S318G", "K418R", "K464Q"], "gp41": ["V7M", "I72L", "D137E", "L282I", "V289A", "V304F"], "nef": ["F202Y"], "p17": ["E93D", "A121D", "E122K"], "p6": ["S14G"], "rev": ["P100H"], "tat": ["K40T"]}, "labels": {"aa": "INT: V110I; RT-p51: A62V; RT-p66: A62V; gp120: -115S, V144E, R245K, S318G, K418R, K464Q; gp41: V7M, I72L, D137E, L282I, V289A, V304F; nef: F202Y; p17: E93D, A121D, E122K; p6: S14G; rev: P100H; tat: K40T"}}, "children": [{"name": "KF835545", "node_attrs": {"div": 0.15860000000000002, "accession": "KF835545", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN369"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G206A", "A214G", "A278G", "-280G", "A371G", "A379C", "A386G", "C419A", "G468T", "A518G", "T596C", "A614T", "A629T", "A643G", "A645G", "G650A", "A658G", "C774T", "G812A", "A836G", "T902C", "A956G", "T978G", "A1088G", "A1192G", "C1292T", "A1307G", "A1446C", "C1448G", "G1450A", "G1543A", "A1601G", "G1622A", "A1759G", "A1772G", "-1782C", "-1783C", "-1784C", "-1785T", "-1786A", "-1787C", "T1828C", "C1831A", "A1853G", "A1982G", "C1985T", "A1990G", "A2127G", "G2182A", "A2191G", "C2266T", "A2362G", "A2459G", "A2551G", "G2656A", "A2698G", "A2699G", "T2737C", "A2919G", "A3030C", "C3055T", "C3095A", "G3097T", "A3170G", "A3192G", "A3200G", "T3252C", "A3302T", "C3380T", "G3382A", "T3405C", "A3486G", "G3553A", "G3631A", "T3644A", "A3676G", "T3742C", "C3899A", "G3925A", "C4006T", "T4129A", "G4145A", "C4181A", "A4183C", "A4256C", "A4338G", "T4412C", "A4558T", "G4623A", "G4642A", "T4655C", "G4684A", "T4691C", "T4694A", "C4721A", "G4737A", "C4757A", "G4769T", "G4774A", "G4799A", "A4806C", "A4870G", "C4967A", "A4968G", "A5024G", "T5028C", "A5057G", "G5059A", "A5082G", "C5114G", "G5131A", "A5142T", "C5242T", "C5280T", "A5444C", "A5453T", "T5454C", "C5547A", "G5620C", "A5621C", "T5623A", "T5624A", "-5626T", "-5627T", "-5628A", "G5632A", "G5636C", "C5653T", "A5655T", "C5663T", "T5670A", "G5706A", "A5739C", "T5843C", "A5849G", "T5850C", "T5851C", "G5858A", "G5862A", "C5884A", "A5907G", "A5911C", "A5916G", "A5957G", "G5972A", "A6016G", "A6020T", "G6028A", "G6029C", "A6030C", "T6049C", "A6060G", "T6061A", "T6076A", "A6160T", "-6165G", "A6166C", "T6169G", "T6171C", "T6172C", "C6175T", "A6180T", "T6181A", "A6185G", "A6189G", "A6192G", "-6195A", "-6196A", "C6198A", "A6200G", "C6201G", "-6202T", "-6205C", "G6209A", "-6210T", "-6211A", "-6216T", "-6219C", "-6220A", "-6221A", "-6222T", "-6223A", "-6224G", "-6225A", "-6226G", "-6227G", "A6230G", "C6252T", "T6260G", "T6261A", "A6268G", "A6275C", "A6281C", "T6315C", "G6326A", "A6329G", "A6332T", "C6334T", "T6335G", "C6336A", "T6337G", "A6338T", "G6339A", "G6345C", "G6368A", "A6374G", "C6396A", "A6450T", "G6502A", "T6541A", "A6547G", "G6577T", "C6599A", "G6601A", "A6605G", "C6607T", "C6612T", "C6638G", "G6653A", "T6654A", "A6655T", "C6667A", "A6668G", "A6716G", "C6736A", "A6753G", "C6758T", "G6771A", "A6773G", "A6774C", "G6776A", "A6777C", "G6818T", "A6849C", "C6855A", "A6856C", "A6859C", "A6926G", "A6931G", "G6936A", "A6947G", "G6948A", "-6956T", "A6971-", "T6976A", "A6977G", "A6978G", "G6981A", "-6983T", "-6988C", "-6989A", "-6991A", "-6993C", "-6994C", "C7020A", "A7147T", "A7151G", "C7152G", "A7153G", "-7156A", "A7161G", "T7162C", "G7168A", "T7217C", "G7285T", "G7307A", "G7309A", "C7313T", "A7315T", "T7403C", "C7429T", "G7438A", "C7561T", "C7625T", "A7626C", "A7627C", "A7630T", "G7640A", "T7642A", "G7677A", "A7688T", "G7701A", "G7717A", "A7732G", "A7742C", "A7771C", "G7790A", "A7796T", "G7831A", "G7846A", "C7917T", "T7930G", "C7932A", "G7936A", "G8017C", "C8033A", "C8092A", "G8114C", "G8144A", "G8188A", "T8206C", "A8245G", "G8274A", "A8305G", "T8323G", "G8335A", "A8337T", "A8338G", "T8366G", "T8375G", "A8396G", "A8402G", "C8451T", "A8458G", "T8651C", "T8746A", "T8756C", "C8775T", "A8780G", "A8793G", "G8794A", "A8797C", "A8812C", "G8814A", "A8815C", "G8844A", "G8864T", "A8870G", "A8874G", "A8887T", "A8906G", "A8909C", "A8914T", "G8917A", "T9012A", "T9029-", "-9033G", "C9078T", "T9084C"], "INT": ["Q42K", "M50I", "A124T", "Q136N", "I161L", "K188R", "G283D"], "RT-p51": ["K11R", "S69N", "K122E", "I202V", "K275R", "E312A", "Q334N", "T359A", "K366R", "T369A", "I386T", "T403S", "V437A"], "RT-p66": ["K11R", "S69N", "K122E", "I202V", "K275R", "E312A", "Q334N", "T359A", "K366R", "T369A", "I386T", "T403S", "V437A", "K464R", "L517I"], "gp120": ["V2M", "G3E", "K18R", "E19D", "K21R", "T35A", "V40I", "I56L", "M58I", "E59P", "N69R", "N74E", "E102N", "T104S", "-105K", "-106A", "-107N", "-109D", "-110S", "-111S", "-112K", "-114G", "-124T", "I126V", "A133V", "L136E", "K141Q", "K143Q", "V154A", "-157N", "N158E", "D159N", "N160S", "S161G", "S162E", "R164T", "A172T", "T174A", "T181N", "K199M", "E241D", "L249I", "N251D", "A253V", "Q262E", "V267N", "N272G", "T288A", "D294E", "Q300R", "H302Y", "S306N", "K307A", "-308T", "A322S", "K332T", "T334N", "N358D", "G361D", "S365D", "N369D", "S370K", "T371F", "-372N", "-373G", "-374T", "-375T", "-376G", "-377D", "-378S", "-379N", "-380K", "-385T", "P389Q", "-433G", "N434T", "D436G"], "gp41": ["V2I", "L4F", "Q108S", "D113K", "S125N", "N129Y", "R133K", "K147Q", "K156N", "D163N", "T165S", "M176I", "S205L", "T210N", "L244I", "F263L", "V271L", "A281T", "G324E", "F340L", "Q345L"], "nef": ["S8R", "I20M", "K39R", "R151E", "E152A", "N157T", "E158T", "V168I", "E174D", "R178G", "K182M", "H191L", "R192K"], "p17": ["K15T", "H28Q", "A45S", "I61M", "K98N", "K103R", "I104V", "Q108R", "K119E"], "p2": ["-7T", "N8Q"], "p24": ["L83V", "K154R"], "p6": ["K27R", "-35P", "-36Y", "L50S", "S51Y"], "p7": ["R26K"], "pro": ["I19V", "I62V", "P63S", "I64M"], "rev": ["A11E", "Y28E", "E30K", "R50N", "E57Q", "A62D", "H82N", "G89A", "S99N", "A114T"], "tat": ["K19E", "N23T", "Y26F", "S57R", "L74R", "P75T", "R76Q"], "vif": ["V13I", "R19K", "R33K", "D45E", "V51I", "E61D", "R63K", "T74P", "N95S", "H127Q", "I128V", "R158K", "I166V", "N176K", "G182D", "N186Y"], "vpr": ["P4A", "E13V", "T59I"], "vpu": ["E5Q", "L6T", "-7K", "V9I", "G10A", "L16F", "A19V", "K44N", "V79A", "D81G"]}, "labels": {"aa": "INT: Q42K, M50I, A124T, Q136N, I161L, K188R, G283D; RT-p51: K11R, S69N, K122E, I202V, K275R, E312A, Q334N, T359A, K366R, T369A, I386T, T403S, V437A; RT-p66: K11R, S69N, K122E, I202V, K275R, E312A, Q334N, T359A, K366R, T369A, I386T, T403S, V437A, K464R, L517I; gp120: V2M, G3E, K18R, E19D, K21R, T35A, V40I, I56L, M58I, E59P, N69R, N74E, E102N, T104S, -105K, -106A, -107N, -109D, -110S, -111S, -112K, -114G, -124T, I126V, A133V, L136E, K141Q, K143Q, V154A, -157N, N158E, D159N, N160S, S161G, S162E, R164T, A172T, T174A, T181N, K199M, E241D, L249I, N251D, A253V, Q262E, V267N, N272G, T288A, D294E, Q300R, H302Y, S306N, K307A, -308T, A322S, K332T, T334N, N358D, G361D, S365D, N369D, S370K, T371F, -372N, -373G, -374T, -375T, -376G, -377D, -378S, -379N, -380K, -385T, P389Q, -433G, N434T, D436G; gp41: V2I, L4F, Q108S, D113K, S125N, N129Y, R133K, K147Q, K156N, D163N, T165S, M176I, S205L, T210N, L244I, F263L, V271L, A281T, G324E, F340L, Q345L; nef: S8R, I20M, K39R, R151E, E152A, N157T, E158T, V168I, E174D, R178G, K182M, H191L, R192K; p17: K15T, H28Q, A45S, I61M, K98N, K103R, I104V, Q108R, K119E; p2: -7T, N8Q; p24: L83V, K154R; p6: K27R, -35P, -36Y, L50S, S51Y; p7: R26K; pro: I19V, I62V, P63S, I64M; rev: A11E, Y28E, E30K, R50N, E57Q, A62D, H82N, G89A, S99N, A114T; tat: K19E, N23T, Y26F, S57R, L74R, P75T, R76Q; vif: V13I, R19K, R33K, D45E, V51I, E61D, R63K, T74P, N95S, H127Q, I128V, R158K, I166V, N176K, G182D, N186Y; vpr: P4A, E13V, T59I; vpu: E5Q, L6T, -7K, V9I, G10A, L16F, A19V, K44N, V79A, D81G"}}}, {"name": "KF835509", "node_attrs": {"div": 0.14516, "accession": "KF835509", "clade_membership": {"value": "CRF08_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN322"}, "LANL_subtype": {"value": "CRF08_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G491A", "G603A", "C604A", "A614C", "A664G", "A675C", "A833G", "T858C", "T917C", "G1002A", "T1003C", "A1025G", "C1175T", "A1349G", "G1354C", "A1404G", "A1443G", "A1464C", "A1467G", "T1483A", "C1491T", "A1500G", "A1592G", "T1796C", "G1852A", "A1907G", "A2063C", "T2212G", "A2300G", "A2341G", "A2404G", "T2905A", "G2921A", "T2932C", "A2959G", "C3045T", "A3099G", "C3140T", "T3262C", "G3264A", "T3349C", "A3430G", "G3439A", "G3442A", "A3574G", "A3675G", "T3746C", "A3796G", "C3865A", "A4108G", "G4252A", "A4255G", "C4288T", "G4407A", "A4581G", "C4608A", "A4611G", "G4622A", "T4694G", "G4708A", "G4765A", "A4856G", "C5027T", "A5061G", "T5078C", "A5179C", "A5215C", "G5225A", "G5226A", "T5260C", "C5268T", "A5279G", "A5302C", "C5306T", "G5363A", "A5375G", "G5431A", "A5447G", "T5480A", "C5491T", "A5492T", "A5533G", "A5619T", "A5644G", "A5760G", "T5836C", "A5866G", "T5887C", "T5951C", "C5974A", "T6024C", "G6074A", "-6165C", "A6174G", "A6177G", "G6179A", "A6186C", "T6187C", "A6188T", "A6194G", "-6195G", "-6196G", "-6202C", "-6205T", "-6206G", "-6207A", "A6208G", "-6210G", "-6211C", "-6216A", "-6219A", "-6220G", "A6228-", "G6229-", "A6268T", "A6273G", "G6274A", "A6281G", "A6282C", "A6304G", "A6323G", "A6330C", "A6395T", "C6441T", "T6457G", "A6461C", "A6462C", "G6463A", "G6475A", "C6483A", "G6572A", "G6593A", "A6616T", "A6757G", "G6771C", "A6777G", "A6781T", "A6840G", "A6854G", "T6857C", "T6860G", "T6946C", "G6955C", "T6957-", "T6958-", "A6959-", "A6960-", "T6961-", "G6962-", "G6963-", "T6964-", "A6965-", "C6966-", "A6967-", "-6972A", "-6973T", "A6974C", "-6983A", "-6988T", "-6989T", "-6991T", "-6993A", "-6994T", "-6995T", "-6996C", "-6997A", "-7001A", "-7002A", "-7003C", "-7004T", "-7005C", "-7006A", "-7007A", "-7008C", "-7009C", "A7056G", "G7133T", "A7151T", "C7155G", "-7156T", "G7160A", "A7161C", "T7162A", "C7170T", "A7189G", "G7256A", "C7269G", "C7328A", "G7628A", "A7630C", "A7659G", "G7702T", "T7801G", "G7885A", "G7952A", "A7996C", "A7997G", "G8050A", "A8069C", "G8070T", "G8137A", "A8142C", "A8261G", "A8264T", "A8297G", "A8409G", "A8455G", "A8516G", "T8546C", "G8554C", "T8584A", "A8653G", "T8745C", "G8762A", "G8795T", "C8825T", "G8902T", "G8923T"], "INT": ["R211K", "K269R", "A278D", "D279G", "G283S"], "RT-p51": ["D39E", "S69D", "V276I", "A317V", "D335G", "R390K"], "RT-p66": ["D39E", "S69D", "V276I", "A317V", "D335G", "R390K", "K527R"], "gp120": ["Y33H", "V57A", "E102K", "N108-", "-114V", "-116S", "-117G", "-118T", "-119T", "-120S", "-121E", "-122G", "-123M", "-124K", "R138S", "K140R", "K143A", "-157D", "N158G", "D159T", "T181S", "A196V", "N201K", "K203P", "P210Q", "E240K", "E247K", "K254N", "N272S", "S306T", "-308G", "K309N", "-328R", "K329-", "T334A", "S335P", "S336A", "E401G", "V427L", "N432T", "-433S", "N434D", "D436T", "T439I", "V468I", "A472G"], "gp41": ["L9I", "D109N", "Q119R", "R133S", "N166K", "D217N", "K231N", "T232A", "S256L", "R277S", "E280A", "N320D", "I321L", "I332V"], "nef": ["T23A", "E38G", "R71T", "F81Y", "K104R", "Y135L", "R151S", "S187I", "R194M"], "p17": ["A90K", "K110R", "K114Q"], "p2": ["-7A", "N9S", "M14L"], "p24": ["V91T", "G208A", "S225G"], "p7": ["M1V", "F6Y", "P9S", "I12V"], "pro": ["N37D", "M89L"], "rev": ["R35K", "A68T", "Q74P", "V97M"], "tat": ["N24S", "L35Q", "Q39L", "R53G"], "vif": ["L8M", "I9V", "R41K", "G60E", "I159V"], "vpr": ["E25D", "G41N", "T55I", "T59A", "Q66H"], "vpu": ["L4F", "I13V"]}, "labels": {"aa": "INT: R211K, K269R, A278D, D279G, G283S; RT-p51: D39E, S69D, V276I, A317V, D335G, R390K; RT-p66: D39E, S69D, V276I, A317V, D335G, R390K, K527R; gp120: Y33H, V57A, E102K, N108-, -114V, -116S, -117G, -118T, -119T, -120S, -121E, -122G, -123M, -124K, R138S, K140R, K143A, -157D, N158G, D159T, T181S, A196V, N201K, K203P, P210Q, E240K, E247K, K254N, N272S, S306T, -308G, K309N, -328R, K329-, T334A, S335P, S336A, E401G, V427L, N432T, -433S, N434D, D436T, T439I, V468I, A472G; gp41: L9I, D109N, Q119R, R133S, N166K, D217N, K231N, T232A, S256L, R277S, E280A, N320D, I321L, I332V; nef: T23A, E38G, R71T, F81Y, K104R, Y135L, R151S, S187I, R194M; p17: A90K, K110R, K114Q; p2: -7A, N9S, M14L; p24: V91T, G208A, S225G; p7: M1V, F6Y, P9S, I12V; pro: N37D, M89L; rev: R35K, A68T, Q74P, V97M; tat: 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["K35R", "R37K", "G72E"]}, "labels": {"aa": "INT: Q136L, I218T; RT-p51: K20R, K46E, A286V, I292V, T359A, R390K; RT-p66: K20R, K46E, A286V, I292V, T359A, R390K, N447D, Y483C, K527R; gp120: V2M, G4K, N5D, A32G, I56M, M58I, N64T, N74D, I81V, T104K, -105N, -106A, -107K, -109D, -110T, -111H, -112N, -114A, -115T, I126-, A133T, K142E, Y145D, L156-, N158-, D159-, N160-, N161-, S162-, Y163-, R164-, I166T, N167D, T204K, T208S, P210T, R245K, E247K, Q262K, N272G, K277R, D294G, H302Y, -308G, K309D, E312G, R316N, R351G, G361R, N368-, -372L, -373S, -374T, -375Y, -376N, -377S, -378T, -379K, -380D, -381N, -382S, -385P, P389S, N414S, N432I, -433G, N434P, N435K, K464Q, A472E; gp41: I72L, A96N, D113E, N129S, K156N, D163G, N166K, T210I, G220E, K231R, H258R, A268V, L296I, V304L, N320D, I325V, C326G, H330Y; nef: G3S, A15E, R19-, I20-, R21-, R22-, T23-, E24-, P25-, A26-, A27-, D28-, G29-, V30-, G31-, A32-, V33-, S34-, R35-, D36-, L37-, E38-, K39-, H40-, G41-, A42-, I43-, T44-, S45-, S46-, N47-, T48-, A49-, A50-, T51-, N52-, A53-, D54-, C55-, A56-, W57-, L58-, E59-, A60-, Q61-, E62-, E63-, E64-, E65-, V66-, G67-, F68-, P69-, V70-, R71-, P72-, Q73-, V74-, P75-, L76-, R77-, P78-, M79-, T80-, F81-, K82-, G83-, A84-, F85-, D86-, L87-, S88-, F89-, F90-, L91-, K92-, E93-, K94-, G95-, G96-, L97-, E98-, G99-, L100-, I101-, Y102-, S103-, K104-, K105-, R106-, Q107-, E108-, I109-, L110-, D111-, L112-, W113-, V114-, Y115-, H116-, T117-, Q118-, G119-, Y120-, F121-, P122-, D123-, W124-, Q125-, N126-, Y127-, T128-, P129-, G130-, P131-, G132-, V133-, R134-, Y135-, P136-, L137-, T138-, F139-, G140-, W141-, C142-, F143-, K144-, L145-, V146-, P147-, V148-, D149-, P150-, R151-, E152-, V153-, E154-, E155-, A156-, N157-, E158-, G159-, E160-, D161-, N162-, C163-, L164-, L165-, H166-, P167-, V168-, C169-, Q170-, H171-, G172-, M173-, E174-, D175-, E176-, H177-, R178-, E179-, V180-, L181-, K182-; p17: S54A, I61M, N109E, A121D; p2: N8T, -10S, -11N, T12-; p24: P6S, L15I, T110N, G116A, D180G, A204G, P207Q; p6: F15L, T23N, A25V, P30Q; p7: S4N, K41R; pro: M89L; rev: S8N, A11E, R17K, I59V, R88G, G113R, A114N; tat: Y32F, S57R, N67D, P75S, E85K; vif: V31S, R33K, N36S, D45E, K67R, I87V, N95T, K160R; vpr: V46I; vpu: K35R, R37K, G72E"}}}]}]}]}]}]}]}]}, {"name": "NODE_0000402", "node_attrs": {"div": 0.10941999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G157A", "-160C", "A809G", "G3196A", "A3491G", "G3916A", "C5043T", "A5267G", "C5406T", "C5412G", "G5431A", "A5433G", "C5442T", "A5444C", "T5445C", "C5448T", "C5461A", "G5462A", "C5463G", "T5466C", "A5467T", "A5471T", "C5472T", "T5478C", "T5480A", "C5487T", "T5490C", "C5491A", "A5492T", "T5511C", "T5599G", "C5600T", "-5601A", "-5602A", "-5603A", "T5611C", "T5612A", "A5615C", "-5621C", "A5622C", "A5625T", "-5626T", "G5632A", "G5636T", "A5640C", "G5643A", "A5644G", "C5653G", "T5654C", "C5658A", "A5687T", "T5688C", "T5704A", "G5706A", "G5707T", "A5715G", "T5728A", "A5737G", "T5745A", "G5748A", "A5794G", "A5797T", "G5956T", "A5962G", "G5965A", "A6232G", "T6263G", "A7997G", "T8184A"], "gp120": ["E34D", "N108-", "L137V", "T371-"], "gp41": ["L294Q"], "p24": ["L211I"], "tat": ["N12K", "N23T", "R29K", "S31C", "Y32F", "L35Q", "Q39M", "S57R"], "vpr": ["T55A"], "vpu": ["L2Q", "-3A", "-5T", "-6I", "-7L", "I13V", "L16A", "Y27F", "L33I", "V34L", "W41R", "R73N"]}, "labels": {"aa": "gp120: E34D, N108-, L137V, T371-; gp41: L294Q; p24: L211I; tat: N12K, N23T, R29K, S31C, Y32F, L35Q, Q39M, S57R; vpr: T55A; vpu: L2Q, -3A, -5T, -6I, -7L, I13V, L16A, Y27F, L33I, V34L, W41R, R73N"}}, "children": [{"name": "NODE_0000403", "node_attrs": {"div": 0.11655999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G224A", "C604A", "G701-", "G1543A", "G2221A", "G2951A", "G3070A", "C3133T", "G3214A", "G3221T", "A3340G", "T3346C", "A3364G", "C3376T", "C3380T", "G3382A", "T3391A", "C3399A", "A3427G", "A3449T", "G3463A", "G3473A", "G3477A", "G3484A", "A3485C", "G3487A", "T3496C", "T3497A", 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V289L, K298T, I307T, I325A, N331H; p7: R26K; rev: A11E, *101Q, K105E, C107S, A114T, K116N, E117*; vif: V31I; vpu: F27L"}}, "children": [{"name": "results/subtype_trees/CRF65_cpx.nwk", "node_attrs": {"div": 0.16992, "clade_membership": {"value": "CRF65_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C160T", "G162T", "T163-", "G164-", "T165-", "G166-", "G167-", "A168-", "A169-", "A170-", "A171-", "T172-", "C173-", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "T213C", "A214G", "G216A", "A227T", "A256G", "T263A", "G265A", "-281C", "T307A", "A354G", "G361C", "A362T", "A378G", "A379C", "A393C", "A399C", "C417A", "C419A", "T424G", "C426A", "C434T", "C435T", "G452A", "C456T", "T467C", "G491A", "T495G", "C503A", "A507C", "A519G", "C525T", "A530G", "G534A", "C537A", "T539C", "C540A", "A549T", "G554A", "G562A", "C575T", "A576G", "C583T", "A585G", "C586T", "G603C", "G606A", "T614G", "C618A", "G619A", "A629G", "C641T", "G644A", "A645C", "C662T", "A665G", "T667G", "T668C", "A673G", "A677G", 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"T8239A", "A8241G", "G8243T", "A8255G", "T8268C", "A8273G", "T8281G", "C8290T", "A8306C", "A8311C", "T8323A", "G8327A", "C8328G", "A8329G", "A8337T", "A8342C", "G8348A", "C8386A", "T8387G", "A8393G", "C8406A", "C8445A", "C8480T", "T8492A", "G8528A", "A8564G", "C8720T", "G8739A", "A8746T", "G8762A", "A8822G", "C8840T", "G8844A", "T8847A", "G8861A", "G8864A", "A8882G", "A8886G", "A8887T", "C8904A", "A8905T", "A8906G", "A8914G", "G8923T", "C9006G", "T9012C", "T9017A", "T9068C", "C9078T", "G9132C", "C9133T"], "INT": ["S17N", "A124T", "Q136R", "A278D"], "RT-p51": ["V179D", "D237N", "L283I", "P313T", "V317A", "S322A", "I329V", "T386I", "E399N"], "RT-p66": ["V179D", "D237N", "L283I", "P313T", "V317A", "S322A", "I329V", "T386I", "E399N", "I452L", "T477A", "K527R"], "gp120": ["N1S", "V2A", "G3S", "G4D", "E19D", "K21N", "V57I", "D74N", "H77Q", "T104K", "-116S", "E125-", "I126-", "A133V", "V136I", "K140R", "K143T", "V144A", "Y145F", "-157E", "N160S", "A172T", "E240G", "E241G", "-308A", "E323K", "K332I", "S335P", "I388L", "L424I", "V427T", "-433N", "T437N", "E462K", "K464E", "E472K", "E479Q"], "gp41": ["V7M", "S42R", "R46M", "E49D", "M54L", "T67A", "I72V", "I84L", "S101T", "S107T", "D109E", "D113E", "M118I", "Q119E", "D121E", "S125N", "D129G", "T130E", "L135I", "K147L", "D148E", "A151E", "S154K", "K156A", "N157S", "N166K", "T210F", "P211H", "N212H", "P213Q", "G214R", "G215E", "L219P", "G220E", "R221G", "E225G", "D230G", "I235V", "L242F", "S256C", "A268T", "A281G", "Q290V", "E313G", "G314W", "I318V", "V322A", "R324G", "C326W", "F340L", "A342R", "Q345L"], "nef": ["A15E", "T23A", "K39R", "V133T", "Y135F", "C169S", "M173I", "K182V", "Q188M", "H191R"], "p17": ["I7V", "R9T", "K15A", "H28K", "M30R", "L31I", "S54A", "K58Q", "K62E", "A67T", "L68I", "Q69K", "T72S", "R76K", "T81A", "A83V", "T84V", "A90Q", "G91R", "D93E", "R95K", "I104L", "I111S", "Q113R", "K119A", "E120A", "A121G", "-122T", "-124S", "-125S", "-126N", "-127K"], "p24": ["V91I", "L136M"], "p7": ["S4G"], "pro": ["K14R", "P63S", "V82I", "L89M"], "rev": ["I18T", "Y28F", "E30S", "P31S", "R32E", "A37T", "K39R", "H53R", "S54A", "S61R", "T62A", "P67S", "A68E", "Q74L", "L78I", "S86N", "S99R", "A108V", "V109I", "S112P"], "tat": ["M39T", "G42A", "A58T", "L68P", "I69L", "S70P", "P75S", "R76I", "T77I", "Q78R", "D80N", "G83D", "S84P", "E85K"], "vif": ["L8M", "K33R", "D45E", "D78E", "L91M", "R93G", "G101D", "M109L", "K122R", "H127Q", "I130L", "D134N"], "vpr": ["P4S", "Y45H", "E48N", "A55E", "I70V", "V84L", "R85P", "Q86G", "A89G"], "vpu": ["A3P", "T5E", "L7S", "A11G", "V13I", "A16L", "R47Q", "E62D", "S65A", "T66K", "M67L", "D70E", "N73D", "L74F", "R75D", "L76P", "L77W", "D78V", "V79G", "N80D", "D81N"]}, "labels": {"aa": "INT: S17N, A124T, Q136R, A278D; RT-p51: V179D, D237N, L283I, P313T, V317A, S322A, I329V, T386I, E399N; RT-p66: V179D, D237N, L283I, P313T, V317A, S322A, I329V, T386I, E399N, I452L, T477A, K527R; gp120: N1S, V2A, G3S, G4D, E19D, K21N, V57I, D74N, H77Q, T104K, -116S, E125-, I126-, A133V, V136I, K140R, K143T, V144A, Y145F, -157E, N160S, A172T, E240G, E241G, -308A, E323K, K332I, S335P, I388L, L424I, V427T, -433N, T437N, E462K, K464E, E472K, E479Q; gp41: V7M, S42R, R46M, E49D, M54L, T67A, I72V, I84L, S101T, S107T, D109E, D113E, M118I, Q119E, D121E, S125N, D129G, T130E, L135I, K147L, D148E, A151E, S154K, K156A, N157S, N166K, T210F, P211H, N212H, P213Q, G214R, G215E, L219P, G220E, R221G, E225G, D230G, I235V, L242F, S256C, A268T, A281G, Q290V, E313G, G314W, I318V, V322A, R324G, C326W, F340L, A342R, Q345L; nef: A15E, T23A, K39R, V133T, Y135F, C169S, M173I, K182V, Q188M, H191R; p17: I7V, R9T, K15A, H28K, M30R, L31I, S54A, K58Q, K62E, A67T, L68I, Q69K, T72S, R76K, T81A, A83V, T84V, A90Q, G91R, D93E, R95K, I104L, I111S, Q113R, K119A, E120A, A121G, -122T, -124S, -125S, -126N, -127K; p24: V91I, L136M; p7: S4G; pro: K14R, P63S, V82I, L89M; rev: I18T, Y28F, E30S, P31S, R32E, A37T, K39R, H53R, S54A, S61R, T62A, P67S, A68E, Q74L, L78I, S86N, S99R, A108V, V109I, S112P; tat: M39T, G42A, A58T, L68P, I69L, S70P, P75S, R76I, T77I, Q78R, D80N, G83D, S84P, E85K; vif: L8M, K33R, D45E, D78E, L91M, R93G, G101D, M109L, K122R, H127Q, I130L, D134N; vpr: P4S, Y45H, E48N, A55E, I70V, V84L, R85P, Q86G, A89G; vpu: A3P, T5E, L7S, A11G, V13I, A16L, R47Q, E62D, S65A, T66K, M67L, D70E, N73D, L74F, R75D, L76P, L77W, D78V, V79G, N80D, D81N", "clade": "CRF65_cpx"}}, "children": [{"name": "CRF65_cpx_NODE_0000001", "node_attrs": {"div": 0.17951999999999999, "clade_membership": {"value": "CRF65_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "C471A", "A708G", "G1313A", "G1568A", "A1700G", "G1739A", "C1767T", "G1912A", "T2035C", "G2065A", "G2329A", "A2734G", "A2920G", "A2951T", "A2989G", "T3068C", "G3442A", "A3524G", "G3595A", "T3649G", "C4576T", "G4737A", "C4988T", "T5147C", "G5246A", "C5502A", "G5602T", "A5655G", "A5659C", "T5731A", "A6015G", "T6085A", "-6177A", "G6183A", "A6188G", "-6211G", "-6212A", "-6213G", "-6214A", "-6215G", "-6218T", "-6219A", "-6222A", "C6305A", "-6335A", "T6358C", "C6396A", "A6577C", "C6612T", "A6822G", "-6972C", "-6978A", "-6980G", "A6992T", "A7161C", "-7162A", "A7553C", "G7589A", "G7640C", "T7751C", "C8009A", "G8231A", "T8366G", "A8458G", "C8789T", "A8874G", "A8885G", "A9082G"], "RT-p51": ["T286S"], "RT-p66": ["T286S"], "gp120": ["Q54R", "S87G", "K104-", "N159S", "S161G", "T181N", "G241D", "A253V", "K323G", "P326S", "-385T"], "gp41": ["A96T", "E113Q", "A310T"], "nef": ["S8R", "R178G"], "p17": ["L46I", "S125G"], "p2": ["-12T"], "p24": ["S120G"], "pro": ["M89I"], "rev": ["A54E"], "vif": ["V51I"], "vpr": ["Y15H"], "vpu": ["I18L", "L42I"]}, "labels": {"aa": "RT-p51: T286S; RT-p66: T286S; gp120: Q54R, S87G, K104-, N159S, S161G, T181N, G241D, A253V, K323G, P326S, -385T; gp41: A96T, E113Q, A310T; nef: S8R, R178G; p17: L46I, S125G; p2: -12T; p24: S120G; pro: M89I; rev: A54E; vif: V51I; vpr: Y15H; vpu: I18L, L42I"}}, "children": [{"name": "KC870028", "node_attrs": {"div": 0.19576, "accession": "KC870028", "clade_membership": {"value": "CRF65_cpx"}, "country": {"value": "CN"}, "date": {"value": 2010.0}, "Strain_name": {"value": "YNFL02"}, "LANL_subtype": {"value": "CRF65_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A557G", "T583C", "T636C", "A647C", "T695G", "T710C", "G821A", "T992G", "A1002G", "C1229T", "G1421A", "A1487G", "T1501C", "A1536C", "C1556T", "G1562A", "C1571A", "G1622A", "A1670G", "C1756T", "C1768T", "A1853G", "G1901C", "T1909C", "A1966G", "C1986T", "A2006G", "A2029G", "T2104C", "A2179G", "C2326T", "G2413A", "C2467T", "G2470A", "C2485T", "C2885T", "C2960T", "A3200G", "A3399G", "T3450C", "G3556A", "C3577T", "A3675G", "T3721C", "C3773T", "T3799C", "G3907A", "A3987G", "A3988G", "C4021T", "G4176A", "C4288T", "T4441C", "A4820G", "A4956T", "A4967C", "A4990T", "A5049G", "A5059G", "C5213A", "T5294C", "C5398T", "T5483C", "G5558A", "C5578T", "A5603G", "G5619A", "T5636C", "G5683A", "A5689G", "T5793G", "G5872A", "A5907G", "A5959G", "C6004T", "T6026A", "-6165A", "-6166A", "-6167A", "-6174G", "-6175T", "C6178T", "A6179G", "-6180C", "T6181C", "A6183C", "T6189C", "A6197T", "G6198C", "T6199C", "A6200T", "A6201G", "A6206-", "-6217T", "C6223A", "-6224G", "-6225A", "-6227T", "A6228C", "A6257C", "G6273A", "G6303A", "G6323T", "A6449C", "A6484G", "A6502C", "A6514C", "A6640G", "G6647C", "A6669G", "A6689G", "T6735C", "T6763C", "T6794C", "-6833T", "T6863G", "T6932A", "G6935A", "G6936A", "A6950-", "C6951-", "A6952-", "T6953-", "A6954-", "C6955-", "A6956-", "T6958-", "A6962G", "-6963G", "A6964T", "-6968T", "-6969A", "-6970C", "-6971T", "-6973G", "-6974T", "-6975C", "-6977G", "-6995A", "-6996C", "-6997A", "-6998G", "-6999G", "-7000T", "A7060G", "A7151G", "A7155G", "A7158G", "G7256A", "T7681G", "A7693G", "A7702C", "A7713T", "T7747A", "A7800G", "G7801T", "T7863C", "A7880G", "T7918C", "T7939G", "C7984A", "C7993G", "T8171G", "C8232T", "G8241A", "G8276A", "C8351T", "G8531T", "A8537G", "G8590C", "G8666T", "T8740C", "T8746A", "G8795T", "A8803C", "C8813T", "T8840C", "G8886A", "T8887G", "A8892C", "G8917C", "T8923A", "T8947A", "C9148T", "T9150A"], "INT": ["K71R", "G134D"], "RT-p51": ["K102E", "T369A", "E435G"], "RT-p66": ["K102E", "T369A", "E435G", "L452S"], "gp120": ["K18R", "L58M", "-107K", "-108N", "-109A", "-110T", "-111V", "-112S", "-114A", "-115T", "-124E", "-125S", "-126M", "T135P", "R140K", "R150K", "L151I", "E157K", "G161E", "S162Y", "K199Q", "E265Q", "N272S", "I279V", "D294A", "S337A", "S360T", "G361N", "G365S", "T366S", "Y367D", "-368D", "-370S", "-371T", "-372G", "N433D", "N434S", "N435S", "V468I"], "gp41": ["N126K", "R133S", "E137I", "K166S", "I187T", "I193V", "H212Q", "T310I", "G313E", "A325T"], "nef": ["E63D", "G83A", "E108D", "F135Y", "R151S", "E154A", "V182R", "K184Q", "R192T", "R194K", "F202Y"], "p17": ["V83A"], "p24": ["H87Q", "I91V"], "p6": ["P26L", "P30L"], "p7": ["I12T", "I24L"], "pro": ["I19V", "E35Q", "S63L", "K70E"], "rev": ["A15T", "S31A", "Q49E", "V108G"], "tat": ["V36A", "S61D", "P68S", "I77S"], "vif": ["I124L", "Q127H", "Y135F", "K155E", "K158R"], "vpr": ["P37T"], "vpu": ["V10A", "V26I", "I28V", "D62E"]}, "labels": {"aa": "INT: K71R, G134D; RT-p51: K102E, T369A, E435G; RT-p66: K102E, T369A, E435G, L452S; gp120: K18R, L58M, -107K, -108N, -109A, -110T, -111V, -112S, -114A, -115T, -124E, -125S, -126M, T135P, R140K, R150K, L151I, E157K, G161E, S162Y, K199Q, E265Q, N272S, I279V, D294A, S337A, S360T, G361N, G365S, T366S, Y367D, -368D, -370S, -371T, -372G, N433D, N434S, N435S, V468I; gp41: N126K, R133S, E137I, K166S, I187T, I193V, H212Q, T310I, G313E, A325T; nef: E63D, G83A, E108D, F135Y, R151S, E154A, V182R, K184Q, R192T, R194K, F202Y; p17: V83A; p24: H87Q, I91V; p6: P26L, P30L; p7: I12T, I24L; pro: I19V, E35Q, S63L, K70E; rev: A15T, S31A, Q49E, V108G; tat: V36A, S61D, P68S, I77S; vif: I124L, Q127H, Y135F, K155E, K158R; vpr: P37T; vpu: V10A, V26I, I28V, D62E"}}}, {"name": "KC870027", "node_attrs": {"div": 0.19643, "accession": "KC870027", "clade_membership": {"value": "CRF65_cpx"}, "country": {"value": "CN"}, "date": {"value": 2010.0}, "Strain_name": {"value": "YNFL01"}, "LANL_subtype": {"value": "CRF65_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-179T", "T201C", "-280G", "G292A", "A301T", "A302T", "T303-", "T304-", "T305-", "A307T", "A388G", "A428G", "A461G", "A537G", "G614T", "G615A", "G696A", "A711G", "A712G", "C1094T", "A1416C", "A1443G", "G1450A", "C1693T", "A1759G", "A1766G", "A1780G", "A1921G", "C1985G", "A2042G", "A2113T", "A2200G", "G2399A", "C2464T", "T2689C", "A2727C", "A3082G", "C3100T", "A3103G", "T3414A", "T3530C", "T3904C", "A3919G", "A4045C", "G4182A", "T4216C", "G4354A", "A4525G", "T4655C", "T4670C", "A4769C", "A4784G", "G5128A", "G5140-", "G5141-", "A5142-", "A5143-", "C5144-", "C5145-", "A5154G", "A5431C", "C5444A", "A5453T", "G5463A", "T5503C", "G5557A", "C5569T", "C5584T", "T5600C", "A5621T", "C5659T", "T5707G", "A5781G", "G5858A", "A5916G", "T5941G", "T6024A", "G6088A", "G6158A", "T6163C", "-6165C", "-6166T", "-6167G", "A6168T", "T6169C", "G6170A", "T6171G", "C6172A", "-6174A", "-6175G", "A6176T", "-6180A", "A6182G", "T6184G", "A6186G", "C6190A", "A6194G", "A6195T", "T6196C", "-6203G", "-6204A", "-6205G", "-6207G", "-6217G", "A6226-", "A6275C", "G6286T", "T6306G", "G6328T", "A6443C", "G6451A", "A6500T", "G6573A", "A6668C", "G6734A", "G6743A", "C6745T", "C6758T", "G6773A", "A6788G", "A6806G", "C6824T", "C6829T", "-6830G", "-6831G", "-6832A", "C6834-", "T6835-", "A6836-", "A6837-", "T6838-", "A6842C", "C6862A", "T6949C", "-6957A", "A6959G", "A6960G", "-6963C", "A6965T", "C6966A", "A6967C", "-6968A", "-6969C", "-6970G", "-6971C", "-6973T", "-6974A", "-6975A", "-6977A", "-6981A", "-6982T", "-6983A", "-6984C", "-6985T", "-6986G", "C7014T", "C7020A", "A7085G", "A7148G", "A7149T", "C7165T", "T7180A", "C7264A", "T7308C", "G7310-", "G7311-", "A7312-", "A7313C", "G7471A", "G7543A", "A7604G", "C7605T", "T7624A", "G7628A", "G7631C", "A7666G", "A7676G", "A7712G", "C7751A", "A7764G", "G7765A", "G7885A", "C7960A", "G8006A", "G8008C", "A8019C", "T8047C", "T8069A", "C8092T", "A8130G", "T8164C", "A8173G", "C8196T", "A8219G", "A8228G", "A8297G", "C8306A", "G8349A", "G8350A", "A8400C", "A8455C", "T8651C", "G8738A", "A8739G", "T8756C", "G8795A", "G8808A", "C8809G", "T8831C", "A8861G", "A8864T", "G8914A", "T8935A", "T8988A", "A9095G"], "INT": ["R136Q"], "RT-p51": ["E6D", "K211T", "F440Y"], "RT-p66": ["E6D", "K211T", "F440Y", "R527K"], "gp120": ["A2T", "N21S", "D29E", "I57N", "E102K", "-104G", "-114S", "K141Q", "L151S", "S162A", "I197L", "T216S", "G240E", "N272H", "D297N", "H302Y", "E307K", "K312E", "S318G", "H324Y", "N327G", "T330P", "-368N", "N369G", "-374T", "-375Y", "-376T", "-377P", "-378N", "-379N", "-380D", "-381T", "-382D", "-383N", "-384S", "T387I", "P389Q", "I411V", "N432V"], "gp41": ["V2A", "G3L", "I4-", "T101V", "E109K", "E110Q", "N125D", "E148D", "L150M", "K154R", "V235I", "N239T", "C256S", "R277S", "V290L", "T298I", "T306A", "I309V", "I332V"], "nef": ["G3N", "I20L", "A23T", "E38A", "T133V", "A156S", "I173M", "E174D", "R191H", "R194M", "L198Q"], "p17": ["K18R", "I31M", "I68V", "E93D", "V94I", "G121S", "N126G"], "p2": ["-7A", "T8N", "S10-"], "p6": ["P5L", "K27R", "P30S", "E34G"], "pro": ["S63A", "I82V"], "rev": ["R53H", "E54Q", "E57D", "S67P", "L74Q", "H82Y", "S106P", "I109V"], "tat": ["K19Q", "T23N", "Y26F", "H65Y", "P70S", "P84Q"], "vif": ["E61D", "I66M", "R181K", "G185D", "N186-", "H187-", "N190D"], "vpr": ["E13-", "P14-", "E17G"], "vpu": ["E5V", "L34V"]}, "labels": {"aa": "INT: R136Q; RT-p51: E6D, K211T, F440Y; RT-p66: E6D, K211T, F440Y, R527K; gp120: A2T, N21S, D29E, I57N, E102K, -104G, -114S, K141Q, L151S, S162A, I197L, T216S, G240E, N272H, D297N, H302Y, E307K, K312E, S318G, H324Y, N327G, T330P, -368N, N369G, -374T, -375Y, -376T, -377P, -378N, -379N, -380D, -381T, -382D, -383N, -384S, T387I, P389Q, I411V, N432V; gp41: V2A, G3L, I4-, T101V, E109K, E110Q, N125D, E148D, L150M, K154R, V235I, N239T, C256S, R277S, V290L, T298I, T306A, I309V, I332V; nef: G3N, I20L, A23T, E38A, T133V, A156S, I173M, E174D, R191H, R194M, L198Q; p17: K18R, I31M, I68V, E93D, V94I, G121S, N126G; p2: -7A, T8N, S10-; p6: P5L, K27R, P30S, E34G; pro: S63A, I82V; rev: R53H, E54Q, E57D, S67P, L74Q, H82Y, S106P, I109V; tat: K19Q, T23N, Y26F, H65Y, P70S, P84Q; vif: E61D, I66M, R181K, G185D, N186-, H187-, N190D; vpr: E13-, P14-, E17G; vpu: E5V, L34V"}}}]}, {"name": "CRF65_cpx_NODE_0000002", "node_attrs": {"div": 0.17173, "clade_membership": {"value": "CRF65_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T536G", "T902C", "G1472A", "G1589A", "G1742A", "A1819G", "C2083T", "A2128G", "T2212G", "T2452C", "A2641G", "A2836G", "G3439A", "G3494A", "A3866G", "T4117C", "A4968G", "C5514A", "A5643G", "A5718G", "C5727T", "-6225T", "T6325G", "A6576G", "T6735A", "G6773C", "A6812G", "G6818A", "G6821A", "A6840C", "T6958G", "-6986A", "C7127T", "A7158C", "A7549G", "T7747G", "A8409G", "T8440C", "A8447G", "T8651-", "G8660A", "A8717G", "C8775T", "C8825T", "G8852A"], "INT": ["I31V"], "RT-p51": ["D39E"], "RT-p66": ["D39E"], "gp120": ["N158K", "D294E", "E307Q", "N435T"], "gp41": ["E137K"], "nef": ["V33A"], "p2": ["-11N"], "p6": ["N47S"], "tat": ["S61G"], "vif": ["I128V", "P131S"]}, "labels": {"aa": "INT: I31V; RT-p51: D39E; RT-p66: D39E; gp120: N158K, D294E, E307Q, N435T; gp41: E137K; nef: V33A; p2: -11N; p6: N47S; tat: S61G; vif: I128V, P131S"}}, "children": [{"name": "MN564837", "node_attrs": {"div": 0.19257, "accession": "MN564837", "clade_membership": {"value": "CRF65_cpx"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "BFC92"}, "LANL_subtype": {"value": "CRF65_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G256-", "A386G", "A419G", "G424A", "A428G", "G455A", "T485C", "T525C", "C531T", "T571A", "T593C", "C645T", "A663G", "T710C", "A712G", "C749A", "A779G", "C1060A", "C1174T", "T1244C", "A1268G", "T1299C", "C1459A", "G1503A", "A1525G", "G1562A", "A1592G", "G1601A", "G1664A", "C1679T", "T1681C", "C1693T", "A1709G", "C1756T", "G1852A", "A1858G", "C1985T", "A2007G", "T2013C", "G2173A", "G2224A", "T2269A", "T2324-", "A2389G", "A2406G", 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R61S, N86S; tat: I77S; vif: R33K, R34K, V65I, K67I, N95S, D117E, S131A; vpr: S4P, N48D, I63T, L84I, A93T; vpu: I13V, K35Q, D73N, V78I, N81D"}}}, {"name": "CRF65_cpx_NODE_0000003", "node_attrs": {"div": 0.17694, "clade_membership": {"value": "CRF65_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T662A", "G1089A", "A1124G", "A1670G", "G1718A", "C1747A", "G1841A", "A1906G", "A1908G", "A2029G", "G2177A", "A2189G", "A2403G", "G2728A", "T2737A", "C2953T", "C3023A", "A3675G", "A4255G", "T4258C", "A4293G", "C4977T", "T5152C", "A5709G", "A5734G", "C5869T", "A5907G", "T6085G", "G6113A", "-6165A", "-6166A", "-6175T", "-6180G", "T6189G", "-6203G", "-6205G", "-6207G", "A6208T", "A6209G", "-6224G", "A6311G", "G6336-", "A6339G", "C6340T", "A6547G", "A6825T", "-6957T", "-6969G", "-6971C", "-6972T", "-6978A", "C7016A", "C7078T", "A7148G", "T7159A", "-7162T", "G7633A", "A7655T", "T7681A", "T7920C", "A8011C", "T8171G", "C8232T", "A8859C", "A8870C", "A8922C"], "INT": ["K173R"], "RT-p51": ["E28K", "K32E", "K103R", "F214L", "L310I"], "RT-p66": ["E28K", "K32E", "K103R", "F214L", "L310I", "V467I"], "gp120": ["K18R", "-106V", "-115S", "I153V", "Q315-", "R316Q", "V317K", "S318V", "K319S", "L321E", "A322L", "K323T", "H324K", "F325L", "P326Y", "-368M", "L388I"], "gp41": ["I118L", "N126K", "F206S", "A310V"], "p17": ["N109K"], "p6": ["T23N"], "pro": ["V15I", "I36M", "N37S"], "rev": ["I55L"], "vif": ["M189T"], "vpu": ["I43V"]}, "labels": {"aa": "INT: K173R; RT-p51: E28K, K32E, K103R, F214L, L310I; RT-p66: E28K, K32E, K103R, F214L, L310I, V467I; gp120: K18R, -106V, -115S, I153V, Q315-, R316Q, V317K, S318V, K319S, L321E, A322L, K323T, H324K, F325L, P326Y, -368M, L388I; gp41: I118L, N126K, F206S, A310V; p17: N109K; p6: T23N; pro: V15I, I36M, N37S; rev: I55L; vif: M189T; vpu: I43V"}}, "children": [{"name": "MH051841", "node_attrs": {"div": 0.19643, "accession": "MH051841", "clade_membership": {"value": "CRF65_cpx"}, "country": {"value": "CN"}, "date": {"value": 2015.0}, "Strain_name": {"value": "JL15030"}, "LANL_subtype": {"value": "CRF65_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T362G", "C399A", "A426C", "A461G", "C471A", "T473C", "T485C", "C496G", "A513G", "G576A", "T583C", "C645A", "A662G", "G740A", "G743A", "A779G", "T1385C", "A1443G", "-1452G", "-1453T", "-1454C", "-1455A", "-1456A", "-1457T", "G1503A", "A1536C", "C1615A", "A1642G", "C1768A", "C1788A", "A1804G", "T1832C", "A2002G", "A2020G", "A2042G", "A2125G", "G2155A", "C2281T", "C2383T", "A2389G", "G2399A", "A2473G", "T2476C", "T2499C", "A2727G", "A2734G", "C2770T", "T2776C", "T2917C", "C2941T", "A2951C", "C3067T", "G3080A", "A3127G", "T3292C", "G3438A", "T3449A", "T3495C", "A3524G", "A3535G", "C3542T", "G3569A", "G3595A", "T3757A", "A3825G", "G4176A", "C4234T", "G4294A", "A4397C", "A4555G", "T4761G", "T4776A", "A4786C", "A4790G", "G5036C", "G5094A", "T5114G", "A5142T", "A5188T", "A5233G", "G5412A", "T5454C", "A5462G", "G5463A", "T5472A", "C5492T", "C5502T", "C5552A", "G5563A", "G5620A", "A5621C", "C5641T", 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"A8658-", "G8659-", "A8660-", "C8661-", "A8662-", "A8663-", "G8664-", "A8665-", "G8666-", "A8667-", "T8668-", "C8669-", "C8670-", "T8671-", "T8672-", "G8673-", "A8674-", "T8675-", "T8676-", "T8677-", "G8678-", "T8679-", "G8680-", "G8681-", "G8682-", "T8683-", "C8684-", "T8685-", "A8686-", "T8687-", "C8688-", "A8689-", "C8690-", "A8691-", "C8692-", "A8693-", "C8694-", "A8695-", "A8696-", "G8697-", "G8698-", "C8699-", "T8700-", "A8701-", "C8702-", "T8703-", "T8704-", "C8705-", "C8706-", "C8707-", "T8708-", "G8709-", "A8710-", "T8711-", "T8712-", "G8713-", "G8714-", "C8715-", "A8716-", "G8717-", "A8718-", "A8719-", "T8720-", "T8721-", "A8722-", "A8739G", "T8745C", "A8762G", "C8809A", "C8842A", "A8874G", "T8935A", "C8990T", "G9052C", "G9055C", "C9056A"], "INT": ["N17S", "G134D", "I208L"], "RT-p51": ["I135T", "K211R", "T286P", "V329I"], "RT-p66": ["I135T", "K211R", "T286P", "V329I", "R448K", "L452I", "I467T", "H483Y", "E492K", "S554R"], "gp120": ["D4N", "D71E", "E102D", "-105E", "-114S", 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"L110-", "D111-", "L112-", "W113-", "V114-", "Y115-", "H116-", "T117-", "Q118-", "G119-", "Y120-", "F121-", "P122-", "D123-", "W124-", "Q125-", "N126-", "Y127-"], "p1": ["K4R"], "p17": ["I31L", "L46I", "A54G", "I60V", "A81T", "V83A", "L104I"], "p2": ["-7A", "T8N", "N9S", "S10V", "-12T"], "p6": ["P30Q", "-35T", "P37-", "K42R"], "p7": ["V13I", "I24L", "T50N"], "pro": ["S12P", "S63P", "I82V"], "rev": ["L13I", "R53G", "A62T", "S67P", "E68A", "L74Q", "S106P", "V108D", "K115E", "N116K"], "tat": ["K29R", "F32L", "T39M", "P59H", "E63K", "N80D"], "vif": ["L59V", "L64I", "K67T", "V170I", "N176K", "N186Y"], "vpr": ["S4A", "E13V", "Q28H", "N48D"], "vpu": ["E5T", "A15V", "I33L"]}, "labels": {"aa": "INT: N17S, G134D, I208L; RT-p51: I135T, K211R, T286P, V329I; RT-p66: I135T, K211R, T286P, V329I, R448K, L452I, I467T, H483Y, E492K, S554R; gp120: D4N, D71E, E102D, -105E, -114S, -126I, K127N, R150K, S161-, T191A, L198I, N206K, K312M, Y326F, N327P, -328N, K329R, R351G, S360T, -374T, -375S, -376G, -377L, -378S, -379N, -380D, -381T, -382S, -383N, -384S, -385T, E401G, N432A, K472R; gp41: H53Q, A96T, E113G, E130D, R133K, S206P, E215G, G230D, C256S, V290I, T298S, L304F, T306A, V311I, L345V; nef: S8N, E15K, R22K, R39K, A42-, I43-, T44-, S45-, S46-, N47-, T48-, A49-, A50-, T51-, N52-, A53-, D54-, C55-, A56-, W57-, L58-, E59-, A60-, Q61-, E62-, E63-, E64-, E65-, V66-, G67-, F68-, P69-, V70-, R71-, P72-, Q73-, V74-, P75-, L76-, R77-, P78-, M79-, T80-, F81-, K82-, G83-, A84-, F85-, D86-, L87-, S88-, F89-, F90-, L91-, K92-, E93-, K94-, G95-, G96-, L97-, E98-, G99-, L100-, I101-, Y102-, S103-, K104-, K105-, R106-, Q107-, E108-, I109-, L110-, D111-, L112-, W113-, V114-, Y115-, H116-, T117-, Q118-, G119-, Y120-, F121-, P122-, D123-, W124-, Q125-, N126-, Y127-; p1: K4R; p17: I31L, L46I, A54G, I60V, A81T, V83A, L104I; p2: -7A, T8N, N9S, S10V, -12T; p6: P30Q, -35T, P37-, K42R; p7: V13I, I24L, T50N; pro: S12P, S63P, I82V; rev: L13I, R53G, A62T, S67P, E68A, L74Q, S106P, V108D, K115E, N116K; tat: K29R, F32L, T39M, P59H, E63K, N80D; vif: L59V, L64I, K67T, V170I, N176K, N186Y; vpr: S4A, E13V, Q28H, N48D; vpu: E5T, A15V, I33L"}}}, {"name": "KC183778", "node_attrs": {"div": 0.18894999999999998, "accession": "KC183778", "clade_membership": {"value": "CRF65_cpx"}, "country": {"value": "CN"}, "date": {"value": 2011.0}, "Strain_name": {"value": "ANHUI_HF104"}, "LANL_subtype": {"value": "CRF65_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "T201C", "C213T", "G214T", "A215-", "A216-", "A217-", "C531T", "A534G", "T549A", "G595T", "A619G", "G683A", "A704G", "A715T", "A725G", "A977G", "G1019A", "A1250G", "A1418G", "A1458G", "A1719T", "A1766G", "T1954C", "C1985T", "A2007G", "T2013C", "T2041G", "C2202A", "T2323C", "C2467T", "G2704A", "A2804C", "C2885T", "C3207T", "C3346T", "G3401A", "G3483A", "A3543T", "A4096G", "G4182A", "G4267A", "G4723A", "A5113G", "T5147C", "G5246A", 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"V78I", "L82V"]}, "labels": {"aa": "INT: R136Q; RT-p51: A36E, K102E, N237H, A371V, G436R; RT-p66: A36E, K102E, N237H, A371V, G436R, R463K, A477T, H483L; gp120: -105N, -107K, -108N, -109G, -110S, -111S, -112I, -114E, S116V, -117V, -118P, -119M, R140K, A144V, F145S, E157D, K158S, N159S, S160N, A253V, T269V, N272S, I279V, K312R, K317R, -328A, K329-, I332K, -370S, -371T, N432G, N434R, T436N; gp41: L84M, E113K, R133S, K144T, K166N, G221R, T298I, A322V; nef: G3N, A53T, R151K, N161D, I173L, E176D, R194L; p17: P66S, T67A, S72T, C87F, K95R, K127I; p2: N11A; p24: M96I; p6: S14C; pro: K70R, I72T; rev: R39K, V97L, V108G, P112T; tat: N67D; vif: S46N, N176S; vpr: Y15H, I63T; vpu: R37K, V78I, L82V"}}}]}]}]}, {"name": "NODE_0000408", "node_attrs": {"div": 0.12292999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A704-", "A1109G", "T1832A", "A2473G", "C2653T", "T3076A", "A3088G", "A3096T", "G3097A", "A3099G", "T3112C", "C3121T", "A3127G", "G3151A", "A3162G", 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"T9000G", "C9006G", "A9009G", "A9027G", "C9028A", "T9029C", "G9030T", "-9033G", "A9101-", "C9102-", "C9103-", "A9104-", "G9105-", "A9106-", "T9107-", "C9108-", "T9109-"], "INT": ["S17N", "L28I", "I31V", "M84I", "I101L", "T218I"], "RT-p51": ["T35I", "A36E", "D39T", "T48S", "I60V", "Y121D", "I135L", "A200T", "M377T", "T400A", "T403A", "D404E", "E435V"], "RT-p66": ["T35I", "A36E", "D39T", "T48S", "I60V", "Y121D", "I135L", "A200T", "M377T", "T400A", "T403A", "D404E", "E435V", "V466I", "N519S", "S534A", "V548I"], "gp120": ["E102N", "-114T", "-121E", "-122D", "-124E", "V136E", "N159D", "A253V", "H302Y", "-308G", "S318G", "T436E", "T439I"], "gp41": ["I4L", "R46K", "M54L", "D109E", "K144R", "F263L", "I264L", "V266I", "T267A", "V270I", "L285W", "G286W", "G293I", "T298N", "I301V", "S302N", "D305N", "T306V", "C326Y"], "nef": ["S8C", "I16V", "T23A", "I43V", "D54A", "R194W"], "p17": ["I61M", "I111V", "-122K", "G123K"], "p24": ["S41T", "V124I"], "p6": ["P30Q", "R33K", "K42R"], "pro": ["I19M", "K43R"], "rev": ["A15T", "H82T", "D85C", "S88D", "S103L", "G104V", "A108T", "G111D", "N116E"], "tat": ["N7R", "Q17K", "S61N", "N67D"], "vif": ["K36R", "R63K", "K155Q"], "vpr": ["S96P"], "vpu": ["A3S", "V79I"]}, "labels": {"aa": "INT: S17N, L28I, I31V, M84I, I101L, T218I; RT-p51: T35I, A36E, D39T, T48S, I60V, Y121D, I135L, A200T, M377T, T400A, T403A, D404E, E435V; RT-p66: T35I, A36E, D39T, T48S, I60V, Y121D, I135L, A200T, M377T, T400A, T403A, D404E, E435V, V466I, N519S, S534A, V548I; gp120: E102N, -114T, -121E, -122D, -124E, V136E, N159D, A253V, H302Y, -308G, S318G, T436E, T439I; gp41: I4L, R46K, M54L, D109E, K144R, F263L, I264L, V266I, T267A, V270I, L285W, G286W, G293I, T298N, I301V, S302N, D305N, T306V, C326Y; nef: S8C, I16V, T23A, I43V, D54A, R194W; p17: I61M, I111V, -122K, G123K; p24: S41T, V124I; p6: P30Q, R33K, K42R; pro: I19M, K43R; rev: A15T, H82T, D85C, S88D, S103L, G104V, A108T, G111D, N116E; tat: N7R, Q17K, S61N, N67D; vif: K36R, R63K, K155Q; vpr: S96P; vpu: A3S, V79I", "clade": "CRF86_BC"}}, "children": [{"name": "KX582249", "node_attrs": {"div": 0.17976999999999999, "accession": "KX582249", "clade_membership": {"value": "CRF86_BC"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "15YNHS18"}, "LANL_subtype": {"value": "CRF86_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A393T", "G395T", "T396C", "C435A", "C572T", "A645G", "A665G", "T667C", "T668C", "C669G", "-699A", "-700C", "-701G", "-704A", "A725T", "C771G", "T824C", "G935A", "A968G", "A1028T", "A1073G", "A1083G", "A1127G", "A1208G", "C1211A", "T1244C", "T1325C", "G1388A", "G1419A", "G1421A", "A1443G", "C1448T", "G1450A", "C1459T", "A1476G", "T1481C", "C1550T", "G1568A", "C1615T", "G1622A", "A1772G", "T1796C", "A1819G", "A1900G", "A2029G", "G2042A", "C2063T", "G2068A", "C2101T", "A2113C", "C2149G", "A2161C", "A2200G", "T2257C", "T2263C", "G2293A", "G2363A", "C2386T", "A2404C", "G2459A", "C2464A", "G2518A", "C2575T", "A2616T", "T2653C", "A2674G", "T2689C", "C2694T", "A2716T", "G2869A", "C2908T", "G2926A", "A2956G", "A2959G", "C3023A", "A3046G", "T3132A", "T3139C", "G3168A", "A3192G", "T3221G", "G3385A", "G3494A", "A3521C", "C3610T", "G3756A", "A4111G", "T4135C", "A4183C", "A4195G", "A4231G", "G4464A", "T4694G", "T4701C", "C4728A", "A4774T", "A4775T", "G4799A", "G4829A", "T4857C", "G4861A", "A4870G", "C4967T", "T4969G", "C4988T", "T5062G", "G5153C", "A5159G", "C5162A", "A5235T", "T5293C", "G5330A", "G5401A", "G5427A", "A5462G", "G5493A", "G5620T", "T5625A", "G5715A", "A5733G", "-5790T", "G5794A", "-5799G", "-5802G", "A5803G", "C5805T", "-5807T", "-5808G", "-5809G", "-5810G", "G5812-", "T5813-", "G5814-", "G5815-", "A5816-", "T5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "A5824-", "A5825-", "T5826-", "C5827-", "T5828-", "T5829-", "G5831A", "G5832T", "T5836A", "T5837G", "G5839C", "A5840T", "A5842T", "T5844G", "A5845G", "G5848A", "T5851G", "A5881T", "A5896G", "T5929C", "A5935G", "T5941C", "T5956C", "G5962A", "A5965G", "C6067T", "G6158A", "T6163-", "A6164-", "A6168-", "T6169-", "G6170-", "T6171-", "T6172-", "A6173-", "A6176-", "T6178-", "G6179-", "G6183C", "T6184A", "A6188G", "C6190T", "T6193C", "-6195G", "T6196G", "-6198C", "T6199A", "-6208A", "-6209C", "-6210T", "T6213C", "G6218A", "-6221C", "A6225G", "-6226T", "A6229G", "A6233C", "G6267A", "G6269A", "A6281T", "A6282C", "G6303A", "T6325C", "A6326C", "A6327C", "T6334G", "-6335A", "C6336A", "T6337C", "A6338G", "G6339A", "C6375A", "G6384A", "T6403C", "T6472C", "C6477A", "A6481T", "A6489G", "T6490G", "A6502G", "A6520G", "C6545T", "A6547T", "A6736T", "G6743A", "A6751G", "A6759C", "A6778G", "A6780G", "C6797G", "A6799G", "A6800G", "G6801A", "G6806A", "G6807A", "T6808G", "C6819A", "A6840G", "A6849C", "A6854G", "T6932A", "G6935A", "G6936A", "C6937A", "C6951T", "T6958-", "G6962A", "T6976-", "-6990A", "-6991A", "-6993C", "-6994T", "-6995C", "-6996A", "-6997A", "-7008C", "-7009C", "C7014T", "T7018A", "A7040G", "A7069C", "C7084T", "A7112G", "-7151A", "-7152A", "C7201T", "G7256A", "G7268A", "A7313C", "G7390A", "A7420G", "G7441A", "A7519G", "A7533G", "A7641G", "A7669G", "G7688A", "G7701A", "A7714G", "A7722G", "T7765C", "T7912A", "T7921G", "C7926T", "A8055G", "G8173C", "A8188C", "G8208A", "C8220T", "G8349A", "C8369T", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "T8375-", "C8480T", "C8543T", "A8594C", "G8762A", "A8780G", "T8843C", "G8844A", "T8847A", "G8864T", "A8882C", "A8906T", "C8913T", "-8973T", "-8974G", "G8994A", "G9007T", "T9012A", "C9023G"], "INT": ["Q136H", "S230N"], "RT-p51": ["E6D", "K22N", "I35M", "T39A", "V90I", "K103N", "E122K", "D123E", "Q174L", "T200I", "E207D", "L310I", "F346Y", "R358K", "K366R", "S376A"], "RT-p66": ["E6D", "K22N", "I35M", "T39A", "V90I", "K103N", "E122K", "D123E", "Q174L", "T200I", "E207D", "L310I", "F346Y", "R358K", "K366R", "S376A", "I452V", "V467I", "K476Q", "S554N"], "gp120": ["T114A", "-115N", "-123H", "E124G", "K127Q", "R138K", "D139N", "K143S", "R150K", "-157D", "N158P", "N160K", "S161N", "S162D", "T174K", "C177Y", "T208K", "N212R", "L231F", "D297N", "Y302S", "K309R", "Q315E", "R316E", "G318K", "A322E", "-328R", "K329-", "K332T", "N334E", "S335P", "S360T", "G361K", "G365S", "T387I", "I396V", "N420D", "-433K", "N435E", "E436N", "T437E", "V468I", "E472K"], "gp41": ["I72M", "K77R", "D113G", "D129N", "R133K", "N140S", "F206L", "T208I", "N251S", "Q290H", "E295D"], "nef": ["G3S", "I10-", "V11-", "C169S", "E174D", "Q188H", "H191Y"], "p17": ["R20C", "H28R", "L34I", "A90E", "I104V", "V111A", "Q112E", "Q130H"], "p2": ["-7A", "T8N", "S10V"], "p24": ["P14A", "M68I", "M118V", "V230I"], "p6": ["N47S"], "p7": ["S4G", "T50I"], "pro": ["V82I"], "rev": ["V109L", "T114P"], "tat": ["E9K", "K29R", "M39I", "P73S"], "vif": ["F39L", "H48N", "K63I", "R92K", "N95S", "I128R", "I159R", "I166V", "M189I", "H192Q"], "vpr": ["E17Q", "T19A", "L20I", "Q44L"], "vpu": ["T5Y", "L7S", "T61I", "I79N", "N80V", "D81-", "L82-"]}, "labels": {"aa": "INT: Q136H, S230N; RT-p51: E6D, K22N, I35M, T39A, V90I, K103N, E122K, D123E, Q174L, T200I, E207D, L310I, F346Y, R358K, K366R, S376A; RT-p66: E6D, K22N, I35M, T39A, V90I, K103N, E122K, D123E, Q174L, T200I, E207D, L310I, F346Y, R358K, K366R, S376A, I452V, V467I, K476Q, S554N; gp120: T114A, -115N, -123H, E124G, K127Q, R138K, D139N, K143S, R150K, -157D, N158P, N160K, S161N, S162D, T174K, C177Y, T208K, N212R, L231F, D297N, Y302S, K309R, Q315E, R316E, G318K, A322E, -328R, K329-, K332T, N334E, S335P, S360T, G361K, G365S, T387I, I396V, N420D, -433K, N435E, E436N, T437E, V468I, E472K; gp41: I72M, K77R, D113G, D129N, R133K, N140S, F206L, T208I, N251S, Q290H, E295D; nef: G3S, I10-, V11-, C169S, E174D, Q188H, H191Y; p17: R20C, H28R, L34I, A90E, I104V, V111A, Q112E, Q130H; p2: -7A, T8N, S10V; p24: P14A, M68I, M118V, V230I; p6: N47S; p7: S4G, T50I; pro: V82I; rev: V109L, T114P; tat: E9K, K29R, M39I, P73S; vif: F39L, H48N, K63I, R92K, N95S, I128R, I159R, I166V, M189I, H192Q; vpr: E17Q, T19A, L20I, Q44L; vpu: T5Y, L7S, T61I, I79N, N80V, D81-, L82-"}}}, {"name": "CRF86_BC_NODE_0000001", "node_attrs": {"div": 0.15213, "clade_membership": {"value": "CRF86_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "A694C", "G695T", "C697A", "T698C", "G702-", "G703-", "-712A", "-713G", "-714A", "A1089G", "A1307G", "A1495G", "G1562A", "C1682T", "C1721T", "C1825T", "A1839G", "G1861A", "G2210A", "A2410C", "T2440C", "G2524A", "G2682A", "G2683A", "G2714C", "A2725G", "A2734G", "C2749T", "A2836G", "A3020C", "A3280G", "A3484G", "T4147A", "A4222G", "A4228T", "A4408C", "A4420G", "A4863G", "A5005G", "T5006C", "T5292C", "A5352G", "T5470C", "T5789C", "C5792G", "C5795G", "-5799T", "-5802C", "-5807A", "-5808T", "C5974T", "A6022G", "T6085G", "-6165C", "-6166A", "-6167G", "-6174A", "-6198G", "-6200A", "-6226G", "G6475A", "G6653A", "A6689G", "-6971A", "-6973T", "-6975C", "-6977A", "-6978A", "-6981G", "-6984C", "-6985A", "-6986A", "-6987A", "-6988C", "A7027G", "C7045T", "G7057A", "T7150-", "A7155C", "T7156A", "T7267G", "C7625A", "A7818G", "C7929T", "G8304C", "A8717C", "A8750C", "C8775T", "A8812G", "G8902T", "G8917A", "G9097-", "T9098-", "A9099-", "G9100-"], "INT": ["K211N"], "RT-p51": ["G196E", "E207Q", "I309L"], "RT-p66": ["G196E", "E207Q", "I309L"], "gp120": ["I56M", "H77Q", "-105D", "-108N", "I279V", "D294E", "-374T", "-378N", "N434S"], "gp41": ["Q108K", "K172R", "P209L", "R334T"], "nef": ["N157S", "M168V", "S187I", "R192K"], "p17": ["K18R", "E120A", "A121D"], "p2": ["-11A"], "p24": ["S120G"], "p6": ["P49L"], "p7": ["K10R"], "pro": ["K14R"], "tat": ["F32L"], "vif": ["R36S", "R93G"], "vpr": ["I63T", "I83V"]}, "labels": {"aa": "INT: K211N; RT-p51: G196E, E207Q, I309L; RT-p66: G196E, E207Q, I309L; gp120: I56M, H77Q, -105D, -108N, I279V, D294E, -374T, -378N, N434S; gp41: Q108K, K172R, P209L, R334T; nef: N157S, M168V, S187I, R192K; p17: K18R, E120A, A121D; p2: -11A; p24: S120G; p6: P49L; p7: K10R; pro: K14R; tat: F32L; vif: R36S, R93G; vpr: I63T, I83V"}}, "children": [{"name": "KX582250", "node_attrs": {"div": 0.17487999999999998, "accession": "KX582250", "clade_membership": {"value": "CRF86_BC"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "15YNHS23"}, "LANL_subtype": {"value": "CRF86_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G418A", "C435T", "T495G", "A512G", "G518A", "A530C", "C558A", "G562A", "T567C", "T570C", "T571A", "A585G", "C586T", "A604C", "T614G", "-711A", "A803G", "A815G", "T1172C", "C1304T", "A1367G", "G1477A", "T1646C", "A1701T", "G1764-", "A1765-", "A1766-", "C1767-", "A1768-", "G1769-", "A1770-", "A1771-", "A1772-", "T1796C", "G1855A", "A2029G", "A2198G", "T2263C", "T2353C", "C2410T", "C2443T", "G2459A", "T2476C", "G2602A", "G2686A", "T2689C", "A2713G", "T2723A", "G2902A", "G2921A", "G2925A", "G3031C", "T3045C", "C3067A", "A3283C", "A3286G", "A3409G", "A3456G", "A3487G", "C3504G", "A3511C", "G3556A", "C3652T", "G3869A", "A3961G", "C4024T", "T4110C", "C4181A", "G4219A", "G4268A", "C4412T", "A4581G", "C4585T", "A4629G", "A4684G", "G4687A", "T4701G", "T4772C", "G4779A", 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["T23A", "-106V", "-107K", "-109D", "-110S", "-111N", "-112S", "T114V", "-115S", "-123Y", "E124K", "V137L", "Q142R", "K143Q", "L151V", "I153L", "-157K", "D159S", "S161V", "I197L", "T208K", "E240G", "V258A", "V267T", "T269I", "N272G", "K277R", "E294Q", "Q300K", "K312Q", "K332I", "N364K", "-368N", "N369G", "-370T", "-371Y", "-372S", "-373S", "-375N", "-376S", "-377S", "A412E", "N414E", "T416K", "L425P", "-433T", "N435-", "D446N", "R448K", "K474R"], "gp41": ["Q39R", "R122K", "S154K", "K156N", "S205P", "T210A", "N212D", "D230G", "N239S", "N251S", "S256L", "N302S", "V306A", "A310T", "V322A", "L330I"], "nef": ["I10T", "V11A", "L87F", "S88G", "S103F", "H116Y", "Y120F", "Q125H", "N126K", "C142W", "S157C", "E158G", "N162I", "R178G", "L189I", "L198V", "C206W"], "p17": ["S54A", "M61I", "Q65H", "L75I", "R76K", "F79H", "T84V", "D93E"], "p6": ["T8S", "E29-", "Q30-", "K31-"], "p7": ["S4N"], "pro": ["M19I"], "rev": ["R14K", "Y28C", "E30G", "I59L", "Q74P", "V109I"], "vif": ["R15G", "K33R", "R34K", "F39V", "V65I", "I66V", "P131H", "Q155K", "K179R"], "vpr": ["E25D", "G41S", "Q44L"], "vpu": ["T5E", "N80H"]}, "labels": {"aa": "INT: V32I, V112A, Q136K, V165I, K269R, Q285R; RT-p51: I35V, E122K, L210M, V276I, R277K, E312D, V317A, D324E, E396D; RT-p66: I35V, E122K, L210M, V276I, R277K, E312D, V317A, D324E, E396D, I452V, K454R, T470S; gp120: T23A, -106V, -107K, -109D, -110S, -111N, -112S, T114V, -115S, -123Y, E124K, V137L, Q142R, K143Q, L151V, I153L, -157K, D159S, S161V, I197L, T208K, E240G, V258A, V267T, T269I, N272G, K277R, E294Q, Q300K, K312Q, K332I, N364K, -368N, N369G, -370T, -371Y, -372S, -373S, -375N, -376S, -377S, A412E, N414E, T416K, L425P, -433T, N435-, D446N, R448K, K474R; gp41: Q39R, R122K, S154K, K156N, S205P, T210A, N212D, D230G, N239S, N251S, S256L, N302S, V306A, A310T, V322A, L330I; nef: I10T, V11A, L87F, S88G, S103F, H116Y, Y120F, Q125H, N126K, C142W, S157C, E158G, N162I, R178G, L189I, L198V, C206W; p17: S54A, M61I, Q65H, L75I, R76K, F79H, T84V, D93E; p6: T8S, E29-, Q30-, K31-; p7: S4N; pro: M19I; rev: R14K, Y28C, E30G, I59L, Q74P, V109I; vif: R15G, K33R, R34K, F39V, V65I, I66V, P131H, Q155K, K179R; vpr: E25D, G41S, Q44L; vpu: T5E, N80H"}}}, {"name": "KX582251", "node_attrs": {"div": 0.16965, "accession": "KX582251", "clade_membership": {"value": "CRF86_BC"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "15YNHS26"}, "LANL_subtype": {"value": "CRF86_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A520C", "A556G", "A592G", "T593G", "G651A", "T667G", "-711G", "G911A", "G1002A", "A1017G", "A1070G", "A1088G", "A1253G", "G1313A", "G1388A", "T1483A", "G1498A", "C1610T", "G1760A", "A1832C", "A1876G", "A1907G", "C2010T", "T2104C", "G2156A", "T2245C", "C2281A", "G2293A", "A2482T", "C2503T", "G2518A", "C2596T", "C2671T", "G2872A", "A2884G", "G2950A", "C3067T", "G3250A", "T3412C", "G3449A", "A3474G", "G3494A", "A3529G", "T3567C", "C3610T", "G3686A", "C3734A", "A3755G", "G3756C", "A3838G", "C3908A", "A4025C", "C4210A", "C4404T", "A4574T", "T4761G", "A4847G", "T4907C", "T4910C", "C4937A", "G5094A", "C5132T", "C5162T", "G5199A", "C5203T", "G5267A", "C5294T", "A5426G", "G5427A", "A5594G", "G5620C", "G5717A", "A5824C", "A5825G", "C5884T", "G6029A", "G6055A", "T6127C", "G6170T", "T6171A", "-6175T", "A6176G", "-6177G", "T6178C", "G6179A", "-6180C", "A6191T", "-6195A", "A6197G", "-6201C", "-6202C", "G6211T", "A6219T", "-6221A", "C6223G", "A6288C", "T6322-", "G6323-", "A6324-", "T6334C", "-6335T", "A6346G", "G6384A", "A6488C", "G6572A", "A6573C", "A6576G", "G6588A", "G6777C", "T6787C", "A6798G", "A6809G", "C6826A", "T6838C", "A6856T", "C6857G", "C6937T", "C6938T", "-6956C", "-6957C", "-6967A", "-6968T", "-6969A", "-6970C", "-6972A", "-6974G", "-6979T", "-6980G", "-6982T", "-6983A", "-6989A", "-6990A", "-6991T", "-6993A", "-6994T", "-6995T", "-6996C", "-6997A", "-7007A", "-7008C", "-7009C", "G7033A", "A7063G", "C7127T", "A7148T", "A7149C", "-7150A", "-7151T", "-7152C", "A7154T", "G7212A", "G7256A", "G7268C", 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K77Q, E110A, D113E, S165T, M176I, A189V, D232N, A243T, H258R, L304F, A342V; nef: R71K, L76I, K104R, D111T, Q125D, N162S, W194F, Y203F; p17: H28R, K62T, E74G, Y86W, A90E, E106K, V111G, K122E; p24: V91I, M96V; p7: F6Y, R11K; pro: T12P, N37D, A71V; rev: E30K, R50K, S61N, L78I, T114A; tat: K17R, R76Q; vif: L59V, I87M, D117E, I166V, V170I; vpr: P10S, R32K, A55T; vpu: T5H, R37K, N73R"}}}]}]}, {"name": "NODE_0000411", "node_attrs": {"div": 0.13606, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C540A", "G809A", "A1192G", "T1359A", "A1362C", "C1448T", "G1450-", "A1643G", "A1709G", "A1942G", "A1972G", "A1981G", "T1987C", "T1996C", "T1999C", "A2003C", "A2005C", "G2008A", "A2086T", "C2087T", "A2098C", "C2101T", "C2107T", "T2353C", "T2356C", "C2533T", "A2578G", "T2579A", "A2617G", "C2708T", "G2710A", "G2842A", "T2845C", "T3132A", "A3529G", "C4079T", "A4159C", "A4174G", "T4177G", "C4181A", "A4183G", "A4195C", "G4219A", "C4234T", "G4264A", "G4285A", "C4288T", 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"V153I", "E174D"], "p2": ["-7T"], "p24": ["K154R", "S210T", "I211L"], "pro": ["K69H"], "tat": ["L68P", "P81T"], "vif": ["K167Q"], "vpu": ["K35R", "T61L"]}, "labels": {"aa": "INT: Q136K, I201V, K211R; RT-p51: C162S, F346Y; RT-p66: C162S, F346Y; gp120: D34E, T104-, N113-, I197L, H259Q, E262Q, K312E, I388L; gp41: P216H; nef: D28E, V33A, R35Q, E38D, I43L, S45T, A49D, A50T, T51N, E59R, V153I, E174D; p2: -7T; p24: K154R, S210T, I211L; pro: K69H; tat: L68P, P81T; vif: K167Q; vpu: K35R, T61L"}}, "children": [{"name": "results/subtype_trees/CRF87_cpx.nwk", "node_attrs": {"div": 0.16732, "clade_membership": {"value": "CRF87_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A214T", "G216A", "A217T", "A227T", "A256G", "T263A", "G265A", "-281C", "A326G", "A359G", "A388G", "C434T", "C435T", "G562A", "A563G", "A604C", "G619A", "G644A", "A689T", "A690G", "A692-", "G693-", "A694-", "G695-", "G696-", "C697-", "T698-", "G702-", "G703-", "-710C", "-711A", "-712A", "-713G", "-714A", "C749T", "T767C", 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"A5248T", "T5281C", "A5291G", "C5333T", "A5360G", "T5424C", "T5472A", "T5475C", "C5513T", "G5532A", "G5538C", "G5546A", "A5555C", "A5557G", "G5558A", "G5563C", "G5565A", "A5567C", "C5569A", "A5575G", "C5578T", "A5581C", "C5651T", "G5668A", "T5686C", "A5739T", "G5794A", "T5797C", "T5851-", "G5865A", "A5915G", "A5917C", "T5920C", "C5958G", "T5980C", "A6022G", "A6066G", "G6086A", "A6112G", "-6167A", "-6174C", "-6175C", "-6177A", "-6180A", "A6186C", "A6188C", "A6194-", "A6253C", "T6261A", "G6263T", "G6267A", "A6438T", "A6458G", "C6499T", "G6566T", "A6573G", "A6581G", "A6605G", "C6613T", "A6689G", "A6799G", "A6850C", "C6857G", "A6881G", "-6956T", "-6957A", "-6972A", "-6973T", "-6974G", "-6975C", "A7111C", "C7124A", "T7134A", "G7160A", "A7161C", "-7162T", "G7197A", "G7198A", "G7199A", "G7256A", "G7339A", "T7444C", "C7510G", "A7630C", "T7642C", "G7688A", "T7747C", "T7876C", "G7885A", "C7917T", "G7995A", "A8006G", "T8008G", "A8019G", "G8030T", "A8055G", "T8097C", "A8110G", "G8111A", "G8130A", "C8145G", "C8171T", "A8172T", "G8173A", "C8196T", "A8207T", "G8208C", "C8221T", "C8232T", "G8242A", "G8245A", "G8261C", "A8263C", "G8276A", "C8277T", "C8291T", "T8292G", "C8294A", "G8349A", "A8441G", "T8597C", "T8651C", "A8793G", "G8794C", "C8828T", "T8832C", "A8914G", "G8923T", "G9007T", "A9009G", "T9012C", "G9015T", "G9016C", "T9017C", "G9132A"], "INT": ["K269R", "A278D"], "RT-p51": ["Y121H", "D177E", "A200V", "P272A", "Q278E", "D291E", "I292V", "E312T", "D324E", "P345T", "Y346H", "M377T", "R390K", "T400A", "D404E"], "RT-p66": ["Y121H", "D177E", "A200V", "P272A", "Q278E", "D291E", "I292V", "E312T", "D324E", "P345T", "Y346H", "M377T", "R390K", "T400A", "D404E", "N447S", "V491S"], "gp120": ["G4E", "K21D", "T35R", "I56M", "D71G", "E78K", "V136E", "V137L", "R138K", "Q142K", "S161T", "Y195F", "N202D", "A238S", "E240G", "I243V", "N251D", "I279V", "-308N", "K332N", "S335A", "I343V", "G365S", "L424I", "V427E", "R448K", "D449N", "V468I"], "gp41": ["R231K", "I235V", "N239S", "N251S", "L265S", "V270I", "A281G", "Q290L", "T298I", "A310V", "E320H", "A325I", "L330C", "H331N"], "nef": ["G3N", "R151T", "H191R", "R194M"], "p17": ["K18R", "Q69K", "R76K", "R95Q", "K119D", "E120K", "A121K", "G123-"], "p2": ["T8N", "S10-", "-12T"], "p24": ["V27I", "S41T", "V91H", "A92V"], "p7": ["K26R"], "pro": ["V15I", "I36V"], "rev": ["G6E", "E11K", "R14Q", "A15T", "R17K", "I18L", "H53R", "S54A", "D84G", "S88D", "S99R", "A108V", "V109I"], "tat": ["F32L", "S46F", "R57K", "Q60P", "S61D", "E63Q", "D64A", "H65N", "N67A", "P68S", "I69L"], "vif": ["L8M", "E61D", "D78N"], "vpr": ["G41S", "E48D", "I63V"], "vpu": ["A15V", "V21I", "E44D", "D60E", "E62S", "E63T", "S65V", "T66D", "-68G", "D70-", "M71-", "G72-", "N73-", "L74-", "R75-", "L76-", "L77-", "D78-", "V79-", "N80-", "D81-", "L82-"]}, "labels": {"aa": "INT: K269R, A278D; RT-p51: Y121H, D177E, A200V, P272A, Q278E, D291E, I292V, E312T, D324E, P345T, Y346H, M377T, R390K, T400A, D404E; RT-p66: Y121H, D177E, A200V, P272A, Q278E, D291E, I292V, E312T, D324E, P345T, Y346H, M377T, R390K, T400A, D404E, N447S, V491S; gp120: G4E, K21D, T35R, I56M, D71G, E78K, V136E, V137L, R138K, Q142K, S161T, Y195F, N202D, A238S, E240G, I243V, N251D, I279V, -308N, K332N, S335A, I343V, G365S, L424I, V427E, R448K, D449N, V468I; gp41: R231K, I235V, N239S, N251S, L265S, V270I, A281G, Q290L, T298I, A310V, E320H, A325I, L330C, H331N; nef: G3N, R151T, H191R, R194M; p17: K18R, Q69K, R76K, R95Q, K119D, E120K, A121K, G123-; p2: T8N, S10-, -12T; p24: V27I, S41T, V91H, A92V; p7: K26R; pro: V15I, I36V; rev: G6E, E11K, R14Q, A15T, R17K, I18L, H53R, S54A, D84G, S88D, S99R, A108V, V109I; tat: F32L, S46F, R57K, Q60P, S61D, E63Q, D64A, H65N, N67A, P68S, I69L; vif: L8M, E61D, D78N; vpr: G41S, E48D, I63V; vpu: A15V, V21I, E44D, D60E, E62S, E63T, S65V, T66D, -68G, D70-, M71-, G72-, N73-, L74-, R75-, L76-, L77-, D78-, V79-, N80-, D81-, L82-", "clade": "CRF87_cpx"}}, "children": [{"name": "KF250408", "node_attrs": {"div": 0.18996, "accession": "KF250408", "clade_membership": {"value": "CRF87_cpx"}, "country": {"value": "CN"}, "date": {"value": 2012.0}, "Strain_name": {"value": "DH32"}, "LANL_subtype": {"value": "CRF87_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A368G", "A530T", "T668G", "C669G", "A678G", "C830T", "A881G", "G908A", "A1112G", "T1148C", "C1229T", "T1271G", "C1292A", "A1443G", "C1768A", "C1831T", "G1846A", "G1852A", "C1867T", "A1894C", "A1982G", "G2009A", "C2044A", "A2191G", "T2236C", "G2470A", "G2683A", "G2728A", "A2767G", "G2788A", "T2917C", "G2947A", "G2972A", "A3027G", "A3079G", "G3088A", "C3128T", "C3129T", "A3190G", "G3236A", "A3448G", "A3454G", "C3475T", "A3481G", "T3644G", "C3652T", "C3763T", "A3816G", "C3850T", "C3908T", "A4012G", "G4046A", "A4107C", "T4132A", "G4145A", "G4268A", "C4576A", "T4703A", "C4771G", "A4870G", "T4972C", "T5043C", "A5051G", "A5057G", "T5062G", "A5082G", "G5099A", "T5248C", "C5251A", "G5355A", "G5357A", "T5415C", "A5525G", "A5528C", "A5537C", "T5600C", "A5602C", "C5622T", "C5640T", "A5704T", "G5842-", "T5843-", "T5844-", "A5845G", "G5848A", "-5851G", "A5867G", "C5989T", "G6023T", "T6024C", "A6030G", "C6052T", "A6053G", "G6065A", "G6158-", "A6159-", "A6160-", "T6161-", "G6162-", "T6163-", "A6164-", "A6167G", "G6170T", "T6171G", "C6174G", "C6175A", "A6180T", "T6181A", "G6183C", "A6185G", "C6188G", "C6190A", "A6191T", "T6193C", "-6194C", "-6195A", "-6197G", "-6198G", "-6200A", "-6201C", "-6202C", "-6205T", "-6206A", "-6207C", "-6208A", "-6209A", "-6210T", "-6211G", "-6212G", "-6213T", "-6214A", "-6215C", "-6216C", "-6217C", "-6218A", "-6219G", "-6220G", "-6221A", "-6223A", "-6224T", "-6225G", "-6226A", "G6227-", "A6228-", "A6229-", "A6230-", "T6231-", "G6232-", "A6233-", "C6252T", "G6277A", "C6278A", "A6283C", "T6285A", "A6288T", "G6329A", "T6334G", "A6338G", "T6340G", "C6482A", "T6541C", "C6563T", "A6584G", "A6639G", "G6773A", "A6774G", "A6776G", "A6781G", "A6800T", "A6820G", "C6826T", "A6840G", "A6856C", "G6947A", "T6956A", "A6957T", "T6958G", "A6959C", "A6960C", "G6962A", "G6963A", "A6965-", "C6966-", "A6971G", "A6972G", "G6974A", "T6976A", "-6977G", "-6978A", "-6979C", "-6980A", "-6981T", "-6982G", "-6983T", "-6984C", "-6985T", "-6986A", "-6987A", "-6988T", "-6989G", "-6990G", "-6991T", "-6993C", "-6994A", "-6995G", "-6996A", "-6997A", "-6998G", "-6999G", "-7000T", "-7001A", "-7002A", "-7003T", "-7004A", "-7005T", "-7006C", "-7007A", "-7008C", "-7009A", "A7010C", "G7065A", "A7112G", "C7136A", "A7148G", "T7150G", "A7157C", "A7158T", "T7162A", "A7163G", "G7168A", "G7181A", "G7182T", "T7267C", "C7269A", "T7308C", "C7393T", "G7440A", "A7502G", "C7606T", "G7640A", "C7755A", "G7790A", "G7873A", "C7951A", "A7998G", "A8032T", "C8106T", "G8137T", "G8216A", "A8255G", "G8402A", "C8489A", "A8490G", "T8584A", "T8585C", "A8617G", "A8717G", "G8729A", "G8787A", "A8788G", "C8794A", "G8844A", "T8847C", "G8848A", "A8870C", "A8887G", "G8888A", "A8954G", "G8955A", "G9026A", "C9078T"], "INT": ["K14R", "M84I", "A91T", "K111T", "S119R", "A124T", "V165I"], "RT-p51": ["V293I", "K311R", "T345L", "V381I"], "RT-p66": ["V293I", "K311R", "T345L", "V381I", "I452L", "L517V"], "gp120": ["N5D", "V57S", "E59G", "M67V", "G71R", "E102D", "-104T", "-113N", "E125-", "I126-", "K127-", "N128-", "A133V", "K143N", "V144E", "Y145F", "-157D", "N160K", "S162G", "P210T", "I244V", "Q262R", "E307R", "N308E", "R316W", "S318G", "-328R", "K329-", "-368M", "N369P", "-370N", "-371G", "-374T", "-375D", "-376M", "-377S", "-378N", "-379G", "-380T", "-381E", "-382G", "-383N", "-384I", "-385T", "I386L", "R404Q", "N420D", "N432E", "N435L", "T437A", "G443I"], "gp41": ["V2A", "R46K", "T67A", "D113N", "D129N", "A151E", "D163N", "S205L", "H216Q", "D232G", "A243S", "A268V", "R276H", "D305N", "I318V"], "nef": ["N3S", "M20I", "D49E", "T50A", "F81Y", "K92R", "D149S", "T151E", "C169H", "E176D", "K182R", "D205N"], "p17": ["Q65H", "I111M", "Q112E", "T115A"], "p2": ["T7A"], "p24": ["H91Q", "D180E", "D187E"], "p6": ["S51L"], "pro": ["I62V", "A71T"], "rev": ["R4G", "S5R", "S8P", "S61I", "T62S", "V97L"], "tat": ["K50R", "K51T", "Q54P", "A67D", "T81K"], "vif": ["F39L", "A62G", "N95S", "V129A", "I159R", "I166V"], "vpr": ["V84I"], "vpu": ["I33L"]}, "labels": {"aa": "INT: K14R, M84I, A91T, K111T, S119R, A124T, V165I; RT-p51: V293I, K311R, T345L, V381I; RT-p66: V293I, K311R, T345L, V381I, I452L, L517V; gp120: N5D, V57S, E59G, M67V, G71R, E102D, -104T, -113N, E125-, I126-, K127-, N128-, A133V, K143N, V144E, Y145F, -157D, N160K, S162G, P210T, I244V, Q262R, E307R, N308E, R316W, S318G, -328R, K329-, -368M, N369P, -370N, -371G, -374T, -375D, -376M, -377S, -378N, -379G, -380T, -381E, -382G, -383N, -384I, -385T, I386L, R404Q, N420D, N432E, N435L, T437A, G443I; gp41: V2A, R46K, T67A, D113N, D129N, A151E, D163N, S205L, H216Q, D232G, A243S, A268V, R276H, D305N, I318V; nef: N3S, M20I, D49E, T50A, F81Y, K92R, D149S, T151E, C169H, E176D, K182R, D205N; p17: Q65H, I111M, Q112E, T115A; p2: T7A; p24: H91Q, D180E, D187E; p6: S51L; pro: I62V, A71T; rev: R4G, S5R, S8P, S61I, T62S, V97L; tat: K50R, K51T, Q54P, A67D, T81K; vif: F39L, A62G, N95S, V129A, I159R, I166V; vpr: V84I; vpu: I33L"}}}, {"name": "CRF87_cpx_NODE_0000001", "node_attrs": {"div": 0.16979, "clade_membership": {"value": "CRF87_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A815G", "A965G", "A1173G", "C1174T", "T1238C", "A1879G", "G1968A", "G3825A", "A4027G", "T5147C", "A5576C", "C5787A", "A5788T", "A5849-", "T5850-", "-6165G", "G6179A", "T6187C", "C6189A", "T6196-", "T6199-", "G6339C", "A6778T", "G6806A", "A6855C", "A6905G", "T6953-", "A6954-", "C6955-", "-6968T", "-6969A", "A7342C", "A7629G", "A8152G", "T8210G", "G8264T", "G8350A"], "INT": ["S17N"], "gp120": ["R351G", "-433S"], "gp41": ["L303V", "V321L"], "nef": ["M168V"], "p24": ["T148V"], "pro": ["R57K"], "rev": ["I21L", "I102V"], "vpr": ["Y15H"]}, "labels": {"aa": "INT: S17N; gp120: R351G, -433S; gp41: L303V, V321L; nef: M168V; p24: T148V; pro: R57K; rev: I21L, I102V; vpr: Y15H"}}, "children": [{"name": "KC898992", "node_attrs": {"div": 0.18749, "accession": "KC898992", "clade_membership": {"value": "CRF87_cpx"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09YNLC497sg"}, "LANL_subtype": {"value": "CRF87_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C419T", "T435A", "A500T", "A512G", "G608A", "T614G", "A680G", "A724T", "C845T", "G914A", "A1003C", "T1006C", "A1017C", "G1088A", "G1090A", "A1415C", "A1418G", "G1421A", "T1501C", "C1610A", "G1737C", "C1795T", "A1840G", "A1927G", "C2149G", "G2417A", "A2524G", "T2605C", "A2611G", "A2629G", "A2637G", "G2647A", "T2694A", "A2727G", "G2887A", "G3004A", "G3007A", "C3129A", "G3154A", "T3197C", "C3294T", "T3449A", "A3684G", "C3692T", "G3765A", "C3823T", "A3901G", "A3982G", "C4210T", "T4315G", "G4560A", "C4576A", "T4676C", "C4721A", "A4733C", "A4735G", "T4769G", "G4855T", "T4858G", "T4866C", "C5251A", "C5268T", "A5293G", "A5305G", "T5319A", "C5424T", "C5538G", "G5599A", "C5611T", "A5612T", "A5631G", "A5865G", "C5924T", "C5974T", "G6029A", "A6086G", "A6164G", "-6166A", "A6176T", "T6178C", "A6222-", "C6253A", "A6282C", "T6287C", "A6324G", "A6333G", "T6337C", "G6391A", "T6460C", "T6490C", "T6499C", "G6605A", "G6743A", "C6758T", "A6781T", "A6786C", "C6792T", "T6794A", "A6796G", "A6810G", "G6881A", "T6961G", "-6967A", "-6970C", "C6975G", "-6977G", "-6978C", "-6979A", "-6980G", "-6981A", "-6982A", "-6983T", "-6984T", "-6985T", "A6992-", "C7014T", "A7015C", "C7096A", "A7107G", "A7149T", "T7150A", "-7151A", "-7152G", "-7153T", "C7161A", "A7198G", "A7241G", "G7268C", "G7285A", "G7291A", "G7340A", "A7373T", "A7375G", "G7441A", "C7690A", "G7702T", "A7735G", "A7817C", "T7852C", "C7874A", "A7880G", "C8005T", "G8017C", "A8029T", "A8032G", "T8035A", "T8038G", "C8047T", "C8051A", "C8097T", "A8102G", "A8295G", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "T8375-", "G8376-", "G8377-", "A8378-", "G8412A", "A8413G", "C8437T", "G8441A", "A8534G", "A8746T", "G8793A", "A8799T", "A8801G", "G8814C", "A8823G", "C8853T", "T8903A", "A8906G", "C8913A", "-8993T", "G8997-"], "INT": ["R262K"], "RT-p51": ["V108I", "I178M", "Y181C", "M184I", "V200E", "K211R", "T345Q", "A400V"], "RT-p66": ["V108I", "I178M", "Y181C", "M184I", "V200E", "K211R", "T345Q", "A400V", "K530R", "R557K"], "gp120": ["E4G", "E59K", "K78E", "-124G", "I126M", "K142Q", "K143T", "Y145H", "-157G", "N159D", "N160S", "D251N", "D297N", "H302Y", "K309N", "N311T", "T313I", "L314M", "K319R", "N334T", "V343I", "S365G", "-368F", "N369-", "T387I", "N414K", "K418R", "N432I", "T436N", "I463V", "E472P"], "gp41": ["G13S", "I24L", "D109G", "D129K", "R133S", "K172Q", "L191I", "I193V", "S205L", "L242F", "A243S", "S265L", "T267A", "N331S"], "nef": ["S9-", "I10-", "V11-", "G12-", "E24R", "Y135F", "I153L", "E158Q", "N161D", "H171Y", "S187R", "R191S"], "p17": ["L34I", "E55D", "D93E", "Q130L"], "p24": ["H91P", "V92A", "M96L", "S120N"], "p6": ["-18Q", "-19E", "E20-", "E21-", "T39I"], "p7": ["I12T", "D48E"], "rev": ["R53C", "E57Q", "S61F", "T62A", "C63S", "L64V", "P67S", "A68E", "D85G"], "vif": ["D45E", "K50R", "D61E", "R90I", "L91W", "Y94H"], "vpr": ["A55V", "F72Y"], "vpu": ["Q2L"]}, "labels": {"aa": "INT: R262K; RT-p51: V108I, I178M, Y181C, M184I, V200E, K211R, T345Q, A400V; RT-p66: V108I, I178M, Y181C, M184I, V200E, K211R, T345Q, A400V, K530R, R557K; gp120: E4G, E59K, K78E, -124G, I126M, K142Q, K143T, Y145H, -157G, N159D, N160S, D251N, D297N, H302Y, K309N, N311T, T313I, L314M, K319R, N334T, V343I, S365G, -368F, N369-, T387I, N414K, K418R, N432I, T436N, I463V, E472P; gp41: G13S, I24L, D109G, D129K, R133S, K172Q, L191I, I193V, S205L, L242F, A243S, S265L, T267A, N331S; nef: S9-, I10-, V11-, G12-, E24R, Y135F, I153L, E158Q, N161D, H171Y, S187R, R191S; p17: L34I, E55D, D93E, Q130L; p24: H91P, V92A, M96L, S120N; p6: -18Q, -19E, E20-, E21-, T39I; p7: I12T, D48E; rev: R53C, E57Q, S61F, T62A, C63S, L64V, P67S, A68E, D85G; vif: D45E, K50R, D61E, R90I, L91W, Y94H; vpr: A55V, F72Y; vpu: Q2L"}}}, {"name": "KC899012", "node_attrs": {"div": 0.18673, "accession": "KC899012", "clade_membership": {"value": "CRF87_cpx"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09YNRL215050sg"}, "LANL_subtype": {"value": "CRF87_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G388A", "G407A", "A418G", "A518G", "A540C", "G603A", "C604T", "T636C", "A714G", "T953C", "G1004T", "A1400G", "C1490T", "G1568A", "C1640G", "G1643A", "C1650T", "T1653C", "G1709A", "-1782G", "-1783C", "-1784C", "-1785C", "-1786T", "-1787T", "C1788-", "C1789-", "C1790-", "T1791-", "T1792-", "A1793-", "A1794-", "C1795-", "T1796-", "T1797-", "C1798-", "C1799-", "T1828G", "A1839G", "C1954T", "A1963G", "A1993C", "C2010T", "T2335C", "G2392A", "T2449G", "C2456T", "G2473A", "T2479A", "T2542G", "G2869A", "T2905C", "G2914A", "G2920A", "G2926A", "A2962G", "T3045C", "C3055T", "C3128A", "C3131T", "G3142A", "T3221G", "A3403G", "T3449G", "T3541A", "A3592G", "A3682G", "A3706T", "A3973G", "C4015T", "A4052C", "C4141T", "C4173T", "G4263A", "A4264C", "A4498G", "A4564G", "A4671C", 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["R18K", "H28R", "I61M", "K69Q", "A90I", "K121E"], "p6": ["-35A", "-36L", "P37-", "L38-", "T39-", "S40-", "L50W"], "pro": ["K14R", "E65D", "A71V"], "rev": ["S8T", "L64M", "G84S", "S86R"], "tat": ["Q54H"], "vif": ["M29L", "I31V", "K33R", "K36N", "N78D", "R93S"], "vpu": ["V15A", "A19V"]}, "labels": {"aa": "INT: T93P, A133V, G163D; RT-p51: H121Y, V317A, H346Y, S376A; RT-p66: H121Y, V317A, H346Y, S376A, I452V; gp120: E102K, -104S, -108N, -109V, -110T, -111N, -112N, -113G, -114T, -115Y, -116K, -117G, -118A, -119D, -120Q, K141E, N159E, N160T, S162T, D202N, V243I, T250E, A253T, A291T, T292G, D294I, R299K, Q300L, K309T, A322E, N332L, N334A, S336H, Y367K, -368G, -370S, -383S, -384S, -385V, R428W, N435S, T436S, T437N, E438A, E472A; gp41: D109S, D113E, K144N, N166K, A268G, H320N, R324S, C326Y; nef: K104Q, E108D, T151V, E158N; p1: P7S, S8P; p17: R18K, H28R, I61M, K69Q, A90I, K121E; p6: -35A, -36L, P37-, L38-, T39-, S40-, L50W; pro: K14R, E65D, A71V; rev: S8T, L64M, G84S, S86R; tat: Q54H; vif: M29L, I31V, K33R, K36N, N78D, R93S; vpu: V15A, A19V"}}}]}]}, {"name": "results/subtype_trees/CRF118_BC.nwk", "node_attrs": {"div": 0.16297999999999999, "clade_membership": {"value": "CRF118_BC"}}, "branch_attrs": {"mutations": {"nuc": ["-280G", "C426T", "G542T", "-699A", "-700C", "-701G", "-704A", "G743A", "T746C", "T851C", "A881G", "T897C", "T902C", "T944A", "C950T", "A956G", "G959A", "A968C", "T992G", "A1016G", "G1019A", "C1061T", "A1070G", "G1077A", "C1094T", "G1101A", "T1103C", "C1115A", "T1136C", "T1182C", "G1199A", "T1237A", "T1253A", "A1263T", "C1292A", "G1339A", "G1354C", "G1355A", "A1446C", "A1449-", "C1459A", "G1472A", "G1526A", "C1535T", "G1568A", "C1610T", "A1619G", "G1622A", "C1768T", "C1849G", "G1852A", "A1853T", "G1861A", "C1867A", "C1873T", "A1903C", "A1906G", "A1920G", "C1960T", "A2007C", "G2155A", "G2182A", "A2194C", "A2198G", "C2199T", "C2202A", "G2210A", "A2211C", "T2212A", "A2230G", "A2233G", "A2237T", "T2263C", "C2266T", "A2273G", "A2287G", "G2290A", "G2293A", "G2518A", "C2644T", "A2699G", "T2776C", "C2806T", "A2818G", "C2828A", "A2829G", "A2875G", "A2956G", "G3044A", "T3045C", "A3115G", "G3142A", "G3154A", "A3196G", "A3214G", "G3334A", "G3340A", "C3346T", "T3649C", "A3651G", "C3652T", "A3664G", "A3667G", "G3685A", "T3695G", "A3703G", "T3712C", "A3899C", "A3916G", "A3952G", "A4030G", "A4112G", "G4464A", "C4471T", "A4475C", "A4495G", "A4498C", "C4501T", "A4552G", "C4576T", "G4622A", "A4677G", "A4684G", "C4721A", "G4774A", "T4776A", "A4870G", "A4911T", "G4932A", "T4972C", "C4978A", "T5062G", "C5203T", "A5240G", "G5267A", "G5275C", "G5279A", "G5336A", "T5406C", "G5412C", "G5433A", "T5442C", "C5444A", "C5445T", "T5448C", "C5451T", "A5461C", "A5462G", "G5463T", "T5467A", "T5472C", "C5478T", "A5480T", "T5487C", "C5490T", "A5491C", "T5492A", "C5511T", "G5644A", "C5727T", "T5929C", "A5959C", "G6023C", "G6074A", "A6173-", "-6180G", "G6183A", "C6190A", "-6206A", "-6207G", "-6208A", "-6209A", "-6212G", "-6213T", "-6214A", "-6216C", "-6218G", "-6219A", 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"F263L", "I264L", "V266I", "T267V", "L285W", "G286W", "G293I", "I301V", "T306A", "I318V", "V322I", "C326Y", "R334T"], "nef": ["E158Q", "N161D"], "p17": ["Q69D"], "p2": ["T8Q", "N9G"], "p24": ["D71E", "E79D", "H87Q", "M96I", "A116T", "V124I", "D128E", "F169Y", "T178S", "D187E", "R203K", "G208A"], "p6": ["P30L"], "pro": ["I19L", "E35D", "I36M", "K41R", "K70T"], "rev": ["H82T", "D85C", "S103L", "G104V", "S107P", "N116D"], "tat": ["K12N", "T23N", "K29R", "C31S", "Q35L", "M39Q", "L74I"], "vif": ["I31V", "K33R", "K36N", "D45E", "R63K", "L64I", "N95S", "M109L", "A116T", "V129A", "P131H", "I159R"], "vpr": ["I46V", "A55T", "A59T"], "vpu": ["V13I", "L27I"]}, "labels": {"aa": "INT: K42Q, M84I, I113V, S230N, I234L, G283S; RT-p51: T35V, A36E, D39T, T48S, I60V, I202V, Q245R, V317T; RT-p66: T35V, A36E, D39T, T48S, I60V, I202V, Q245R, V317T, I452L, N519S, S534A; gp120: V57L, D71E, D74N, -157D, N158E, K203E, -308R, -368N, -433E, E472T; gp41: Q108H, D109T, F206L, P209H, F263L, I264L, V266I, T267V, L285W, G286W, G293I, I301V, T306A, I318V, V322I, C326Y, R334T; nef: E158Q, N161D; p17: Q69D; p2: T8Q, N9G; p24: D71E, E79D, H87Q, M96I, A116T, V124I, D128E, F169Y, T178S, D187E, R203K, G208A; p6: P30L; pro: I19L, E35D, I36M, K41R, K70T; rev: H82T, D85C, S103L, G104V, S107P, N116D; tat: K12N, T23N, K29R, C31S, Q35L, M39Q, L74I; vif: I31V, K33R, K36N, D45E, R63K, L64I, N95S, M109L, A116T, V129A, P131H, I159R; vpr: I46V, A55T, A59T; vpu: V13I, L27I", "clade": "CRF118_BC"}}, "children": [{"name": "MZ063028", "node_attrs": {"div": 0.19974999999999998, "accession": "MZ063028", "clade_membership": {"value": "CRF118_BC"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "YN245F"}, "LANL_subtype": {"value": "CRF118_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "C435A", "T495G", "A499C", "A518G", "A530T", "A540G", "G554A", "C558G", "T560A", "G579A", "A585G", "C586T", "T587G", "T614A", "C926T", "G987C", "T988C", "A1022G", "A1025T", "C1060A", "T1172C", 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"T4216C", "A4219G", "G4223T", "A4225G", "A4231T", "A4239T", "A4243G", "G4244A", "T4258A", "A4259T", "G4263A", "A4264C", "G4268T", "A4271G", "A4273G", "C4281T", "T4282G", "A4295C", "A4297G", "G4298C", "A4303C", "T4308G", "G4310C", "A4312G", "A4323C", "A4334G", "G4354T", "A4356T", "G4359T", "G4361C", "A4370G", "G4371A", "A4373T", "A4375G", "A4382C", "A4384G", "A4385G", "A4387T", "G4388A", "A4390C", "A4393C", "A4395G", "A4397C", "A4399T", "C4404A", "A4406T", "A4408G", "T4412A", "A4414T", "A4416C", "C4498T", "A4555G", "C4585T", "A4625G", "T4676C", "G4677A", "G4685A", "A4721G", "C4724T", "G4767A", "T4820A", "A4994C", "A5036C", "G5185A", "C5197T", "G5257A", "A5282C", "G5355T", "C5398T", "T5415G", "A5426G", "A5453T", "T5475C", "A5547C", "A5575G", "C5611A", "A5613T", "G5614A", "T5617G", "T5618A", "A5632G", "G5647A", "C5663T", "G5699A", "A5704C", "G5717A", "A5721G", "G5755A", "C5787A", "A5788T", "A5793T", "G5794A", "T5797A", "C5949G", "T6021C", "C6052T", "G6158A", "A6160T", "-6165G", "-6166T", "-6167A", "A6168G", "-6177C", "G6180T", "A6186G", "A6191C", "A6194G", "-6195T", "-6197A", "-6198C", "-6200A", "-6201G", "-6202T", "-6203G", "-6204G", "-6205A", "G6207A", "A6209C", "-6210T", "-6211G", "G6212T", "-6215T", "C6216T", "-6217G", "G6220A", "G6221A", "A6222T", "-6223A", "-6224T", "-6225T", "-6226A", "G6232A", "G6251A", "A6275C", "G6284A", "A6304G", "A6327G", "T6334C", "A6335T", "A6395T", "A6425G", "C6443A", "G6451A", "G6569A", "G6572A", "A6573G", "A6668G", "A6669G", "A6734G", "T6735A", "G6773A", "G6777A", "A6778G", "A6781C", "A6786C", "A6799C", "G6806A", "A6809G", "G6818A", "C6819A", "C6826A", "G6849T", "A6856C", "C6857T", "T6958-", "-6968T", "-6972A", "-6973T", "-6974G", "A6978C", "T6979A", "T6995A", "C6996A", "A6997T", "-6998T", "-6999C", "-7000A", "-7001A", "-7002G", "-7003C", "-7004G", "-7005C", "-7006A", "-7007G", "-7008T", "-7009C", "A7032G", "A7040G", "A7148T", "G7152A", "A7154C", "G7160A", "-7162G", "T7222C", "A7240G", "C7305G", "C7392T", "T7400C", "A7463C", "C7595A", "C7596A", "T7597G", "T7604A", "T7622A", "A7627C", "G7628T", "C7690A", "A7714C", "A7734G", "G7782A", "T7801C", "A7818G", "G7835A", "G7943A", "A7964G", "A8019G", "A8055G", "C8145T", "A8163G", "G8173A", "T8215C", "A8241G", "G8264A", "T8281C", "C8291A", "G8412A", "A8413G", "A8458G", "A8461G", "T8584A", "A8717C", "A8746T", "A8750C", "C8756T", "A8799G", "T8864G", "C8930A", "A8936G", "A8967T", "-8970G", "-8971A", "-8972C", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A", "T9012C", "C9018A", "C9028T", "T9051A"], "INT": ["A23V", "L28I", "I31V", "D41N", "T93P", "G94D", "Q95K", "E96K", "T97P", "Y99L", "I101F", "L102I", "W108C", "V112L", "N117H", "N120I", "S123V", "A129P", "C130G", "W131C", "W132G", "I135S", "K136N", "E138K", "G140A", "Y143S", "N144I", "V150L", "E152D", "N155I", "E157K", "I162L", "G163D", "V165L", "R166G", "A169V", "T174P", "A175P", "M178R", "A179P", "H183P", "R187G", "Y194F", "S195I", "A196P", "R199E", "I200L", "I203L", "I204V", "A205T", "D207G", "I208L", "T210N", "R211W", "L213I", "Q214P", "R284G"], "RT-p51": ["V106M", "Y121H", "I135T", "I142V", "Y181C", "M184V", "V202I", "R277K", "E297A", "P345Q", "N348I", "S376A", "M377R", "T386I"], "RT-p66": ["V106M", "Y121H", "I135T", "I142V", "Y181C", "M184V", "V202I", "R277K", "E297A", "P345Q", "N348I", "S376A", "M377R", "T386I", "Q524E", "K530R", "K558R"], "gp120": ["A32G", "I56T", "E102N", "-115S", "-116S", "A133T", "K141Q", "V144M", "N159K", "N160K", "S161N", "T181S", "T191A", "L197I", "E239K", "E240R", "N272G", "D294E", "E307K", "R308K", "K309N", "N311T", "Q315H", "K319E", "A322K", "H324Q", "K332I", "-370S", "-383S", "-384A", "-385V", "K393R", "I396V", "N432Y", "N434Q", "T436K", "T439K"], "gp41": ["A1G", "A30V", "M54L", "P98K", "S101T", "S107T", "T109S", "D129E", "E137D", "K144R", "S160N", "K172R", "V178I", "G214R", "R221G", "N239S", "N251S", "A281V", "N287S", "I293V", "E313G", "V321I", "L330I"], "nef": ["E24R", "K39R", "H40R", "F81Y", "Q125H", "Y135F", "I153V", "M168V", "D174E"], "p17": ["L34I", "S54A", "E55A", "I61M", "Q65H", "L75V", "V82I", "T84V", "A90E", "D93E"], "p2": ["Q8H", "G9S"], "p24": ["V86P", "E98D", "T110N", "S225G"], "p6": ["S51L"], "p7": ["K14R", "E21L"], "rev": ["E11A", "R14K", "R32K", "K39R", "V109I"], "tat": ["H13Q", "Q17R", "Y26F", "R57S", "N67D"], "vif": ["E61K", "D78E", "Q136H"], "vpr": ["I60L", "V84L"], "vpu": ["Q2N", "A3T", "L4E", "I9V", "V14I", "A19V", "I27F", "R31K", "I33L", "R37K", "A50T"]}, "labels": {"aa": "INT: A23V, L28I, I31V, D41N, T93P, G94D, Q95K, E96K, T97P, Y99L, I101F, L102I, W108C, V112L, N117H, N120I, S123V, A129P, C130G, W131C, W132G, I135S, K136N, E138K, G140A, Y143S, N144I, V150L, E152D, N155I, E157K, I162L, G163D, V165L, R166G, A169V, T174P, A175P, M178R, A179P, H183P, R187G, Y194F, S195I, A196P, R199E, I200L, I203L, I204V, A205T, D207G, I208L, T210N, R211W, L213I, Q214P, R284G; RT-p51: V106M, Y121H, I135T, I142V, Y181C, M184V, V202I, R277K, E297A, P345Q, N348I, S376A, M377R, T386I; RT-p66: V106M, Y121H, I135T, I142V, Y181C, M184V, V202I, R277K, E297A, P345Q, N348I, S376A, M377R, T386I, Q524E, K530R, K558R; gp120: A32G, I56T, E102N, -115S, -116S, A133T, K141Q, V144M, N159K, N160K, S161N, T181S, T191A, L197I, E239K, E240R, N272G, D294E, E307K, R308K, K309N, N311T, Q315H, K319E, A322K, H324Q, K332I, -370S, -383S, -384A, -385V, K393R, I396V, N432Y, N434Q, T436K, T439K; gp41: A1G, A30V, M54L, P98K, S101T, S107T, T109S, D129E, E137D, K144R, S160N, K172R, V178I, G214R, R221G, N239S, N251S, A281V, N287S, I293V, E313G, V321I, L330I; nef: E24R, K39R, H40R, F81Y, Q125H, Y135F, I153V, M168V, D174E; p17: L34I, S54A, E55A, I61M, Q65H, L75V, V82I, T84V, A90E, D93E; p2: Q8H, G9S; p24: V86P, E98D, T110N, S225G; p6: S51L; p7: K14R, E21L; rev: E11A, R14K, R32K, K39R, V109I; tat: H13Q, Q17R, Y26F, R57S, N67D; vif: E61K, D78E, Q136H; vpr: I60L, V84L; vpu: Q2N, A3T, L4E, I9V, V14I, A19V, I27F, R31K, I33L, R37K, A50T"}}}, {"name": "CRF118_BC_NODE_0000001", "node_attrs": {"div": 0.16365, "clade_membership": {"value": "CRF118_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T1448A", "T5471A", "C6336G", "G6339A", "G6821A", "-6982T", "-6983A", "-6984C", "-6985A", "-6986A", "-6987A", "-6988C", "C7170T", "C8037T", "G8180A", "G8844A", "G9016A"], "gp120": ["I126M", "S162N", "E323K"], "rev": ["G111D"], "tat": ["F32Y"], "vpu": ["L61I"]}, "labels": {"aa": "gp120: I126M, S162N, E323K; rev: G111D; tat: F32Y; vpu: L61I"}}, "children": [{"name": "MZ063027", "node_attrs": {"div": 0.18647999999999998, "accession": "MZ063027", "clade_membership": {"value": "CRF118_BC"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "YN23II"}, "LANL_subtype": {"value": "CRF118_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G413A", "C419T", "G438T", "G463A", "G489A", "G491A", "T495C", "G498A", "A530T", "A540G", "G552A", "T587C", "G603C", "A605G", "T614A", "A632G", "T636C", "G644A", "T667G", "A680G", "C684A", "C697A", "T698G", "A806G", "G911A", "A980G", "A989G", "A1077G", "G1090A", "C1169T", "A1173T", "G1328A", "A1346G", "T1451-", "-1455G", "-1456G", "-1457T", "T1511C", "T1535C", "G1664A", "A1700G", "G1841A", "G1845A", "A1882T", "A1982G", "A2174G", "T2412C", "G2539A", "G2602A", "T2605A", "A2614T", "T2631A", "A2677G", "G2704A", "A2896G", "G2926A", "C2960T", "A2962G", "C3067A", "C3178T", "T3181C", "A3202C", "G3211A", "T3221G", "A3224C", "T3225A", "A3268G", "C3307T", "G3364A", "C3496T", "A3601T", "T3943C", "A4000G", "G4030A", "T4110C", "A4111G", "T4260C", "G4263C", "T4412C", "T4537C", "A4778G", "G4802A", "G4859A", "G4861A", "C4898T", "T4911A", "C4972G", "G5062T", "T5237C", "C5242T", "A5279G", "A5291C", "T5311C", "A5376C", "A5377C", "A5431G", "T5454C", "A5495C", "C5514A", "A5545C", "A5556G", "A5576T", "A5581G", "G5614A", "T5686A", "G5717A", "A5743C", "A5790T", "T5791G", "C5792A", "A5793G", "C5795A", "-5799A", "-5800T", "-5801C", "-5802A", "-5803A", "-5804C", "-5805C", "-5806A", "-5807T", "-5808G", "G5811-", "C5827T", "T5836C", "A5935G", "G5963A", "T6024C", "A6059G", "G6158C", "A6160G", "T6163-", "A6164-", "A6168-", "T6169-", "G6170-", "T6171-", "T6172-", "A6176-", "T6181A", "A6185G", "A6186C", "A6190C", "A6191T", "T6193C", "-6195A", "-6197A", "-6198A", "-6200A", "-6201C", "-6202C", "-6203C", "-6204A", "-6205C", "A6206G", "-6210A", "-6211T", "T6213A", "-6215A", "-6217C", "A6219T", "-6223C", "-6224A", "-6225A", "-6226T", "T6238G", "C6252T", "A6265T", "A6268G", "A6275C", "C6278A", "A6282G", "T6287G", "T6289G", "C6293T", "T6295C", "G6303A", "A6327G", "T6331G", "A6332T", "A6338G", "T6340G", "G6380A", "A6456G", "T6457G", "A6458G", "T6541A", "A6577G", "C6612T", "G6631T", "C6638G", "T6667C", "A6689G", "G6743A", "A6753T", "A6779C", "G6801A", "G6802A", "A6813C", "G6814A", "A6856C", "C6857T", "C6862T", "A6905G", "G6935A", "G6936A", "C6937A", "T6949C", "T6953-", "A6954-", "C6955-", "-6956C", "-6957T", "-6968T", "-6972C", "-6973A", "-6974T", "A6975T", "-6980G", "-6981G", "C6991T", "-7004G", "-7005A", "-7006C", "-7007T", "-7008C", "-7009A", "C7014T", "A7015C", "C7016A", "C7018T", "A7021G", "A7027G", "C7045T", "G7057A", "C7064A", "C7069A", "A7107G", "T7114G", "A7123C", "A7126C", "A7135G", "G7138T", "A7155C", "-7162A", "A7189G", "A7231G", "G7246A", "T7267G", "A7275G", "A7276G", "A7342T", "G7459A", "A7594C", "T7622A", "A7626T", "G7628C", "C7629A", "A7685T", "T7796A", "T7876C", "A8032T", "G8105A", "T8113G", "T8164C", "G8204A", "G8216A", "C8220T", "T8265C", "T8332A", "G8412A", "A8413G", "G8434A", "A8441C", "G8520A", "G8522A", "C8546T", "T8640C", "A8652C", "A8662G", "C8756T", "C8791A", "A8793G", "C8853T", "A8882G", "G8923T"], "INT": ["V112A", "I162T", "G163A"], "RT-p51": ["T27A", "V106A", "K173N", "V179D", "D324E", "S376A", "M377Q"], "RT-p66": ["T27A", "V106A", "K173N", "V179D", "D324E", "S376A", "M377Q"], "gp120": ["V37M", "L57P", "K69E", "E102Q", "-124G", "N128K", "A133V", "K141Q", "Q142K", "K143R", "Y145E", "L147F", "R150K", "N159K", "S161Q", "A176T", "N201R", "N202D", "A253V", "Q259H", "Q262E", "I279V", "D297N", "Q300L", "K309Q", "R316K", "S318G", "K320T", "K332R", "R351G", "G361K", "Y367L", "N368F", "-370G", "-371T", "-372N", "-373S", "-374S", "-375S", "-376D", "-377S", "-378I", "L388I", "K418R", "N420K", "N432T", "E433T", "N435G", "T437N", "T439I", "K474R"], "gp41": ["S107T", "H108L", "T109Q", "T128S", "S165T", "A245V", "A268T", "V301I", "D305N", "A306V", "V321A"], "nef": ["E24R", "G31E", "A60T", "K104Q", "Q107R", "P150Q", "R151G", "H171Y", "R194M"], "p17": ["V35L", "R43K", "E52K", "S54P", "E55K", "Q65H", "E73K", "A90Q", "I111S", "Q117K"], "p2": ["S10N"], "p24": ["T116A", "S120N", "T148S"], "pro": ["V15I", "G16E", "I62V"], "rev": ["E10D", "I21F", "T62S", "S86N", "C89G", "S106P"], "tat": ["M1L", "K19E", "K40T", "N67I", "I69V"], "vif": ["I64M", "R92K", "L109M", "A129G", "R159I"], "vpr": ["Y45H", "T59A", "I63L", "N91P"], "vpu": ["A3T", "R37K", "I46L", "L74F"]}, "labels": {"aa": "INT: V112A, I162T, G163A; RT-p51: T27A, V106A, K173N, V179D, D324E, S376A, M377Q; RT-p66: T27A, V106A, K173N, V179D, D324E, S376A, M377Q; gp120: V37M, L57P, K69E, E102Q, -124G, N128K, A133V, K141Q, Q142K, K143R, Y145E, L147F, R150K, N159K, S161Q, A176T, N201R, N202D, A253V, Q259H, Q262E, I279V, D297N, Q300L, K309Q, R316K, S318G, K320T, K332R, R351G, G361K, Y367L, N368F, -370G, -371T, -372N, -373S, -374S, -375S, -376D, -377S, -378I, L388I, K418R, N420K, N432T, E433T, N435G, T437N, T439I, K474R; gp41: S107T, H108L, T109Q, T128S, S165T, A245V, A268T, V301I, D305N, A306V, V321A; nef: E24R, G31E, A60T, K104Q, Q107R, P150Q, R151G, H171Y, R194M; p17: V35L, R43K, E52K, S54P, E55K, Q65H, E73K, A90Q, I111S, Q117K; p2: S10N; p24: T116A, S120N, T148S; pro: V15I, G16E, I62V; rev: E10D, I21F, T62S, S86N, C89G, S106P; tat: M1L, K19E, K40T, N67I, I69V; vif: I64M, R92K, L109M, A129G, R159I; vpr: Y45H, T59A, I63L, N91P; vpu: A3T, R37K, I46L, L74F"}}}, {"name": "CRF118_BC_NODE_0000002", "node_attrs": {"div": 0.16946, "clade_membership": {"value": "CRF118_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A418G", "A507C", "T852A", "G1002A", "A1173G", "C1331T", "C1598T", "T1768A", "A2828G", "G2829T", "G4294A", "A4494G", "A5248C", "T5463C", "A5547T", "A5555C", "T5568C", "T5584C", "C5651T", "G5956T", "-6166A", "A6188G", "C6418T", "C6424T", "C6487T", "A6489C", "A6605G", "C6766T", "A6854G", "-6972G", "-6998G", "-6999T", "-7000C", "T7678C", "A7722C", "G8036T", "A8151G", "G8243T", "G8531A", "C8690T", "A8701T", "T8831C", "C9093T"], "INT": ["K240R"], "RT-p51": ["R245V"], "RT-p66": ["R245V"], "gp120": ["E34D", "-106V", "-111N", "N160S", "N251D", "-383S", "-384S", "-385V"], "gp41": ["N140T", "A245F", "K283R", "G314W"], "nef": ["Y120F"], "p17": ["K58Q", "D69N"], "p24": ["S41T", "V91I", "T148A"], "p6": ["L30Q"], "rev": ["E11V", "R14Q", "I18T", "C63F"], "tat": ["Q60P", "S70P"], "vpr": ["E48D"], "vpu": ["A15V"]}, "labels": {"aa": "INT: K240R; RT-p51: R245V; RT-p66: R245V; gp120: E34D, -106V, -111N, N160S, N251D, -383S, -384S, -385V; gp41: N140T, A245F, K283R, G314W; nef: Y120F; p17: K58Q, D69N; p24: S41T, V91I, T148A; p6: L30Q; rev: E11V, R14Q, I18T, C63F; tat: Q60P, S70P; vpr: E48D; vpu: A15V"}}, "children": [{"name": "MZ063029", "node_attrs": {"div": 0.19908, "accession": "MZ063029", "clade_membership": {"value": "CRF118_BC"}, "country": {"value": "CN"}, "date": {"value": 2017.0}, "Strain_name": {"value": "YN287_168"}, "LANL_subtype": {"value": "CRF118_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A368G", "G480A", "T539C", "A548G", "G579A", "C590T", "G603A", "A653G", "T777A", "T782C", "A860G", "A932G", "C968T", "T974C", "A980G", "C1118T", "A1307G", "G1313A", "A1346G", "A1433G", "-1449A", "-1450G", "A1495G", "G1498A", "A1543G", "A1644C", "A1725G", "-1729T", "-1730C", "-1731G", "-1732G", "-1733G", "-1734G", "T1735A", "C1736G", "G1737-", "A1738-", "G1739-", "G1740-", "A1741-", "G1742-", "C1744T", "C1753T", "A1772G", "C1903A", "G1906A", "A1982G", "C1985T", "T2013C", "T2158C", "T2257C", "C2326T", "T2494C", "A2551G", "C2584T", "C2589T", "A2612C", "C2626A", "A2767G", "G2788A", "G2875A", "G2925A", "G2946A", "A2951G", "A3001G", "G3016A", "A3019G", "T3022C", "A3031G", "G3091A", "T3133C", "C3140T", "A3200G", "G3264A", "A3265G", "A3283G", "C3294T", "T3349C", "G3385A", "G3494A", "C3499T", "G3523A", "G3529A", "T3559C", "T3628C", "A3684G", "T3721A", "C3779T", "G3791A", "A3805G", "G3825A", "T3844A", "A3866G", "C4015T", "A4078C", "T4085C", "C4141T", "G4145A", "T4153C", "A4213G", "A4528C", "A4555G", "A4571C", "G4582A", "T4640C", "A4643G", "G4802A", "A4862G", "C4898T", "T4907C", "T4911C", "C4937T", "A4952T", "C4967G", "C4972G", "C4996T", "A5050G", "C5052A", "G5140A", "A5148T", "A5159G", "C5160T", "G5167A", "C5275T", "A5293G", "A5360G", "C5397T", "T5466C", "T5480C", "T5483C", "A5492T", "A5495C", "C5513A", "C5536A", "A5537G", "G5538A", "A5545G", "A5602T", "A5612C", "C5621T", "C5679T", "T5686A", "A5689T", "T5707C", "G5784A", "A5790-", "C5792G", "C5795G", "-5799T", "-5800A", "-5801T", "-5802C", "-5803A", "-5804A", "-5805C", "-5806A", "-5807A", "-5808T", "C5827A", "A5935G", "G5948A", "A5957G", "C5958A", "A5962G", "T5964G", "A6030G", "T6046C", "T6101A", "A6160C", "-6165C", "-6167G", "-6177A", "T6181G", "A6183C", "T6184C", "T6187A", "C6189T", "A6192G", "A6194G", "-6195G", "T6199-", "-6205G", "A6209C", "-6210C", "-6211G", "G6212A", "A6214G", "-6215C", "C6216A", "-6217A", "G6221A", "A6222T", "G6263T", "A6268G", "A6281C", "A6288C", "G6323A", "T6325G", "T6328C", "G6329T", "A6330C", "A6333G", "A6335G", "T6337G", "T6340C", "A6395T", "A6425G", "G6451A", "G6569A", "C6592T", "G6601A", "C6612T", "T6643A", "A6646T", "A6655G", "A6659G", "A6661C", "A6723T", "G6743A", "A6780G", "T6787G", "G6801A", "G6802T", "G6806A", "A6840C", "A6847C", "A6855C", "C6888T", "T6892C", "A6934G", "T6958-", "G6963A", "-6968A", "A6969G", "-6973G", "-6974T", "-6980G", "-6981C", "A6992T", "G6993C", "T6994A", "G7026A", "C7089A", "A7144G", "A7153C", "A7154C", "-7162G", "G7166-", "A7167-", "G7168-", "A7169-", "T7170-", "A7171-", "G7197A", "G7256A", "A7268C", "G7285A", "G7428A", "G7628A", "T7642G", "G7677A", "T7681C", "T7774C", "T7796A", "C7825T", "T7876A", "A7929T", "C7932T", "A7938C", "A7950C", "A8006G", "T8008G", "A8018C", "T8035C", "T8097C", "T8103C", "A8118C", "G8130A", "A8152G", "T8164C", "A8188G", "C8196T", "G8208A", "T8215C", "G8216A", "T8292G", "A8305G", "G8385A", "A8396T", "G8404A", "G8407A", "A8413C", "C8460T", "G8479A", "C8483T", "A8488C", "A8494C", "T8501C", "A8517C", "G8518A", "T8672G", "C8747T", "T8789C", "A8793C", "G8794A", "A8824C", "C8853T", "G8888A", "G8923A", "G9037C"], "INT": ["D6N", "S17N", "I31V", "A124T", "K266Q"], "RT-p51": ["T165I", "K173Q", "D177E", "R277K", "R284K", "T286A", "T369A", "R390K", "T400I"], "RT-p66": ["T165I", "K173Q", "D177E", "R277K", "R284K", "T286A", "T369A", "R390K", "T400I", "V467I", "K530R"], "gp120": ["A32T", "T35D", "V37G", "E59G", "L83I", "E102D", "-104T", "-105D", "-112G", "-113T", "-114K", "V137L", "K143Q", "Y145S", "D157K", "E158N", "N159S", "S161G", "T181S", "T191A", "N212T", "E239K", "A253V", "T269A", "Y290F", "D294E", "D297N", "K309R", "N311K", "R316N", "-328T", "K329-", "K332R", "N334A", "S335P", "T345I", "N369D", "-374T", "-375S", "-376R", "-377Y", "-378N", "-379A", "-380T", "-381N", "-382S", "R391K", "A412E", "N434T", "N435G", "T436R", "T437G", "R448K", "V468I", "T472P"], "gp41": ["S42N", "H108Q", "D113E", "S125N", "S165T", "H209L", "T210I", "N212T", "H216P", "I235V", "N239H", "L265S", "V267A", "E272A", "R276H", "T298I", "S302N", "D305N", "L330R"], "nef": ["A15T", "E18D", "R21K", "R22Q", "E24A", "H40Y", "S46N", "D49A", "N51T", "R59Q", "R151Q", "D161A", "H171Y", "R194K"], "p1": ["I5L"], "p17": ["H28R", "G49S", "V82I", "A90K"], "p2": ["G9S", "S10N"], "p24": ["S16T"], "p6": ["R16G", "-18G", "-19E", "E20I", "E21T", "T22P", "T23V", "A25-", "P26-"], "p7": ["K10R", "R11K", "K26R"], "pro": ["D35E", "M36I", "I62V", "P63S", "I72T"], "rev": ["D7E", "S8D", "E30D", "H53R", "S54A", "E57A", "F63L", "I102V", "S106P", "T114A"], "tat": ["L35P", "V36A", "Q39L", "K40T", "S46Y", "Q54R", "R57G", "I74L", "P75S", "T77P", "T81P"], "vif": ["K122N", "H127Q", "A129G", "A137V", "K155R", "P156T", "G185E", "T188S", "H192Y"], "vpr": ["Y15F", "T19V", "I63M"], "vpu": ["Q2P", "T5I", "I28L", "L74I"]}, "labels": {"aa": "INT: D6N, S17N, I31V, A124T, K266Q; RT-p51: T165I, K173Q, D177E, R277K, R284K, T286A, T369A, R390K, T400I; RT-p66: T165I, K173Q, D177E, R277K, R284K, T286A, T369A, R390K, T400I, V467I, K530R; gp120: A32T, T35D, V37G, E59G, L83I, E102D, -104T, -105D, -112G, -113T, -114K, V137L, K143Q, Y145S, D157K, E158N, N159S, S161G, T181S, T191A, N212T, E239K, A253V, T269A, Y290F, D294E, D297N, K309R, N311K, R316N, -328T, K329-, K332R, N334A, S335P, T345I, N369D, -374T, -375S, -376R, -377Y, -378N, -379A, -380T, -381N, -382S, R391K, A412E, N434T, N435G, T436R, T437G, R448K, V468I, T472P; gp41: S42N, H108Q, D113E, S125N, S165T, H209L, T210I, N212T, H216P, I235V, N239H, L265S, V267A, E272A, R276H, T298I, S302N, D305N, L330R; nef: A15T, E18D, R21K, R22Q, E24A, H40Y, S46N, D49A, N51T, R59Q, R151Q, D161A, H171Y, R194K; p1: I5L; p17: H28R, G49S, V82I, A90K; p2: G9S, S10N; p24: S16T; p6: R16G, -18G, -19E, E20I, E21T, T22P, T23V, A25-, P26-; p7: K10R, R11K, K26R; pro: D35E, M36I, I62V, P63S, I72T; rev: D7E, S8D, E30D, H53R, S54A, E57A, F63L, I102V, S106P, T114A; tat: L35P, V36A, Q39L, K40T, S46Y, Q54R, R57G, I74L, P75S, T77P, T81P; vif: K122N, H127Q, A129G, A137V, K155R, P156T, G185E, T188S, H192Y; vpr: Y15F, T19V, I63M; vpu: Q2P, T5I, I28L, L74I"}}}, {"name": "KF250409", "node_attrs": {"div": 0.19761, "accession": "KF250409", "clade_membership": {"value": "CRF118_BC"}, "country": {"value": "CN"}, "date": {"value": 2012.0}, "Strain_name": {"value": "DH33"}, "LANL_subtype": {"value": "CRF118_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A217G", "T396C", "C417T", "G481A", "T495A", "A527G", "A584G", "A604C", "C618A", "A694G", "G810A", "G818A", "C926T", "G1067A", "C1175T", "G1205A", "T1245C", "T1271G", "C1295A", "T1322C", "G1341T", "C1354G", "A1443G", "T1451-", "-1455G", "-1456G", "-1457T", "A1459G", "A1526G", "A1529G", "G1562A", "A1568G", "G1643A", "C1650T", "G1664A", "C1748T", "T1828G", "A1832C", "G1841A", "T1960C", "C1999T", "G2009A", "C2075A", "A2108G", "A2122G", "A2154G", "A2239C", "A2314G", "T2365C", "A2397G", "A2400G", "T2456C", "G2473A", "T2499C", "T2542G", "T2631A", "T2632C", "T2654C", "A2677G", "C2694T", "A2734G", "T2735C", "T2899C", "G2950A", "A2959T", "C2960T", "A2962G", "A3044G", "C3067T", "G3127A", "C3129A", "A3280G", "C3405T", "A3457G", "A3477G", "G3556A", "G3651A", "G3667A", "A3760G", "T3856C", "C4006A", "T4039A", "A4063G", "G4174A", "G4268A", "G4684A", "G4689A", "G4769C", "G4799T", "T4857A", "G4864A", "T4868C", "A4932G", "A4951C", "A4968T", "A4978G", "T5006G", "A5057G", "T5147C", "C5275A", "G5289A", "C5294T", "G5355A", "G5370A", "G5386A", "C5398T", "T5415G", "A5431G", "C5461T", "T5475C", "C5579T", "G5599A", "C5621G", "G5668A", "T5687A", "A5702G", "A5704T", "A5720G", "T5731A", "A5734C", "G5781A", "C5787A", "A5788T", "G5794A", "T5797A", "T5890C", "A5916C", "T5956C", "C5959T", "A6022G", "A6050G", "A6074G", "A6164G", "-6165G", "-6167A", "T6169A", "-6173A", "-6174A", "-6175T", "A6176G", "-6177T", "G6179A", "G6180A", "T6181C", "A6183G", "C6189A", "A6192C", "-6195C", "-6197T", "-6198A", "-6200A", "-6201G", "-6202T", "-6203A", "-6204G", "-6205C", "A6208T", "-6210A", "-6211T", "-6215A", "-6217T", "-6223A", "G6227-", "A6228-", "A6229-", "C6252T", "A6282C", "T6285C", "A6324G", "A6326G", "T6328G", "G6329A", "T6331C", "A6332T", "A6333C", "A6338T", "C6446T", "G6463A", "A6488T", "A6544G", "G6550A", "G6572A", "A6574G", "G6593A", "G6647A", "A6680C", "A6692G", "C6721A", "A6751G", "G6773A", "A6778T", "A6779G", "A6809G", "A6823G", "-6830C", "-6831C", "-6832T", "C6833A", "C6834A", "T6838G", "C6843T", "T6846A", "A6848-", "G6849-", "A6850-", "C6857A", "C6858G", "A6859T", "T6949C", "-6956A", "-6957T", "-6968G", "-6973C", "-6974A", "-6980A", "-6981G", "T6994C", "G7055A", "G7088T", "T7130C", "A7135C", "A7147T", "G7151A", "G7152C", "A7155C", "A7156T", "G7160-", "A7161-", "C7201T", "C7269A", "A7270G", "A7297G", "G7310A", "G7311C", "A7342C", "G7477A", "A7502G", "A7533G", "A7627T", "G7633C", "C7690A", "G7701A", "A7714C", "A7735G", "A7742C", "C7775T", "G7782A", "G7790A", "A7818G", "A7822C", "T7877G", "G7921T", "C7926T", "A7984C", "A7998G", "T8082C", "T8159G", "T8181G", "T8206C", "G8212A", "C8213T", "A8267G", "G8276A", "C8277G", "G8349A", "A8388G", "G8402A", "G8414A", "A8429G", "C8450T", "C8543A", "A8636T", "A8656G", "A8693T", "A8732G", "G8738A", "A8746T", "G8808T", "A8822G", "A8870C", "A8887T", "A8901T", "G8902C", "G8917A", "-8970A", "-8971C", "-8972T", "-8973T", "-8974T", "-8975C", "-8976T", "-8977G", "-8978C", "-8979A", "-8993T", "A8998C", "C8999G", "T9002C", "C9004-", "A9005-", "C9006G", "C9040T", "G9097T", "G9136A"], "INT": ["V165I"], "RT-p51": ["I5V", "K20R", "K101R", "K102R", "Y121H", "I135T", "V179D", "A200V", "F214L", "T317A", "P345Q", "A437V"], "RT-p66": ["I5V", "K20R", "K101R", "K102R", "Y121H", "I135T", "V179D", "A200V", "F214L", "T317A", "P345Q", "A437V", "K461R", "S519N"], "gp120": ["K21T", "I56M", "N66D", "N74D", "-104G", "-105K", "-107N", "-108V", "-109N", "-110S", "-112T", "-113Y", "-114S", "-115S", "-116S", "-117N", "-118V", "-119T", "-120E", "A133V", "K143T", "V144A", "D157G", "N162Y", "N212S", "E240K", "E247K", "E265K", "R280G", "F289L", "D294A", "E307K", "R308S", "K309E", "S318G", "K319E", "-328K", "T330-", "N334E", "N368M", "-370S", "-371T", "-372N", "-373S", "E401K", "A412S", "N432T", "N434G", "T439I", "T472K"], "gp41": ["G3T", "T67A", "K77R", "T109A", "E110D", "D129E", "R133K", "E137D", "K147Q", "S160N", "D163N", "K172R", "S192A", "L206F", "T208I", "D232G", "L260S", "W286G", "I293S", "L304F", "I322V", "A325S"], "nef": ["G3S", "I16V", "M20I", "E98D", "K105R", "Y135F", "A156S", "E176D", "K182M", "R192K"], "p1": ["P7S"], "p17": ["H28C", "G49D", "S54T", "E120-", "A121-"], "p2": ["T7A"], "p24": ["V27I", "D180E", "A204S", "A208G"], "p6": ["L50W"], "pro": ["T12P", "V15I", "A71T", "L93I"], "rev": ["V104G", "D111E"], "tat": ["V4I", "H13Q", "K19E", "R29C", "R57S", "P68L", "P73S"], "vif": ["R33K", "A35T", "E61D", "L91M", "R93K", "T116A", "K122T", "I128L", "H131R"], "vpr": ["Y15H", "R62K", "V84M", "A89T", "S94N"], "vpu": ["T5S", "V21I", "I27Y", "K32R", "I33L", "K38R", "L42I", "I43L"]}, "labels": {"aa": "INT: V165I; RT-p51: I5V, K20R, K101R, K102R, Y121H, I135T, V179D, A200V, F214L, T317A, P345Q, A437V; RT-p66: I5V, K20R, K101R, K102R, Y121H, I135T, V179D, A200V, F214L, T317A, P345Q, A437V, K461R, S519N; gp120: K21T, I56M, N66D, N74D, -104G, -105K, -107N, -108V, -109N, -110S, -112T, -113Y, -114S, -115S, -116S, -117N, -118V, -119T, -120E, A133V, K143T, V144A, D157G, N162Y, N212S, E240K, E247K, E265K, R280G, F289L, D294A, E307K, R308S, K309E, S318G, K319E, -328K, T330-, N334E, N368M, -370S, -371T, -372N, -373S, E401K, A412S, N432T, N434G, T439I, T472K; gp41: G3T, T67A, K77R, T109A, E110D, D129E, R133K, E137D, K147Q, S160N, D163N, K172R, S192A, L206F, T208I, D232G, L260S, W286G, I293S, L304F, I322V, A325S; nef: G3S, I16V, M20I, E98D, K105R, Y135F, A156S, E176D, K182M, R192K; p1: P7S; p17: H28C, G49D, S54T, E120-, A121-; p2: T7A; p24: V27I, D180E, A204S, A208G; p6: L50W; pro: T12P, V15I, A71T, L93I; rev: V104G, D111E; tat: V4I, H13Q, K19E, R29C, R57S, P68L, P73S; vif: R33K, A35T, E61D, L91M, R93K, T116A, K122T, I128L, H131R; vpr: Y15H, R62K, V84M, A89T, S94N; vpu: T5S, V21I, I27Y, K32R, I33L, K38R, L42I, I43L"}}}]}]}]}]}]}]}, {"name": "NODE_0000417", "node_attrs": {"div": 0.11657, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G603A", "T897C", "T902C", "G935A", "T1182C", "C1409T", "G1589A", "T1628C", "C1679T", "T1978A", "A2086T", "C2087T", "G2539A", "T2579A", "G2693A", "G2707A", "G3142A", "G3685A", "A3886G", "A4063G", "C4381T", "A4423G", "T4476G", "A4870C", "C5513T", "G5532A", "G5620A", "A5711G", "A5739T", "-5799T", "-5800A", "-5801T", "-5802G", "-5803G", "-5804A", "-5805G", "-5806A", "-5807T", "-5808G", "-5809G", "-5810G", "G5812-", "T5813-", "G5814-", "G5815-", "A5816-", "T5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "T5828A", "A5830G", "G5831C", "G5832T", "T5834C", "T5837G", "A5845G", "T5851C", "A5856G", "T5859C", "G5860T", "G5902A", "A5911G", "A5916C", "A5917C", "T5920C", "C5924T", "C5974T", "A6022G", "-6198G", "-6200A", "A6228-", "A6520G", "A6774-", "A6788G", "-6957T", "-6974A", "-6984C", "C7045T", "A7155-", "A7629C", "G7668A", "A7714C", "T8176C", "C8291T", "A8516G", "A8537G", "C8543T", "G8729A", "A8823G", "T8831C", "G9097T"], "RT-p51": ["C162S", "A200T"], "RT-p66": ["C162S", "A200T"], "gp120": ["N1S", "V2A", "K21T", "I56M", "-157N", "K312E"], "gp41": ["D109T", "E137D", "V321L", "L330Y"], "nef": ["N161D"], "p17": ["A90T"], "p24": ["M68I"], "pro": ["D60E"], "rev": ["G6E"], "tat": ["S46F"], "vif": ["N95T"], "vpu": ["K35R", "K44D", "D60E", "T61L", "E62S", "E63A", "S65M", "T66E", "-68G", "V69-", "D70-", "M71-", "G72-", "N73H", "L74H", "R75A", "L76P", "L77W", "N80D"]}, "labels": {"aa": "RT-p51: C162S, A200T; RT-p66: C162S, A200T; gp120: N1S, V2A, K21T, I56M, -157N, K312E; gp41: D109T, E137D, V321L, L330Y; nef: N161D; p17: A90T; p24: M68I; pro: D60E; rev: G6E; tat: S46F; vif: N95T; vpu: K35R, K44D, D60E, T61L, E62S, E63A, S65M, T66E, -68G, V69-, D70-, M71-, G72-, N73H, L74H, R75A, L76P, L77W, N80D"}}, "children": [{"name": "results/subtype_trees/CRF85_BC.nwk", "node_attrs": {"div": 0.13451, "clade_membership": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G206A", "-281C", "A286G", "T305A", "A354G", "G367A", "C435G", "C525T", "T587C", "G650A", "-699A", "A980G", "T1004A", "C1061T", "A1070G", "A1088G", "C1118T", "C1229T", "G1301A", "A1343C", "A1458G", "T1493C", "A1719G", "A1804G", "A1819G", "A1897G", "A1978G", "A2029G", "T2158A", "C2202A", "A2203G", "A2437T", "T2456G", "A3277G", "G3379A", "C3577T", "G3684A", "A4183T", "T4679C", "C4721A", "T5293A", "C5303T", "G5336T", "C5342T", "T5406C", "G5412C", "C5552A", "G5556A", "C5678G", "G5781A", "G5784A", "G5872A", "G6023T", "C6067T", "C6116T", "-6165C", "-6167A", "G6179A", "T6184A", "-6186A", "C6190T", "-6209A", "-6210T", "-6211G", "-6212G", "-6214A", "-6215A", "-6216T", "-6217G", "G6232-", "G6323A", "T6331G", "-6335T", "A6443C", "A6544G", "T6735A", "A6799G", "G6801A", "C6895T", "-6956T", "T6976A", "-6983A", "-6985A", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "-6991T", "-6992A", "-6993C", "-6994A", "-6995G", "-6996G", "-6997A", "-7008C", "-7009C", "A7015G", "C7018T", "G7072A", "C7089A", "A7107G", "-7162G", "G7197A", "G7441A", "A7573G", "A7594C", "G7640A", "A7669G", "G7677A", "C7951A", "G8050C", "A8098G", "G8099C", "T8223C", "A8266C", "G8267A", "C8406A", "A8469G", "C8480T", "G8499A", "C8500G", "T8756C", "G8844A", "C8904G", "A8914G"], "INT": ["Q136H"], "RT-p51": ["A36E", "Y121D"], "RT-p66": ["A36E", "Y121D", "R530K"], "gp120": ["V57L", "N159K", "I197L", "D294E", "R316K", "S318A", "-384S", "M406I", "A412E", "K418R", "R448K"], "gp41": ["S125N", "K144R", "N166K", "V266L", "I307T", "V322I", "F340L"], "nef": ["K39Q", "I43V", "A53S", "Q188E", "H191R"], "p17": ["I7V", "G11E"], "p6": ["S14G", "K42R", "N47S"], "rev": ["L13I", "R14K", "A68P", "S84A"], "tat": ["K12N", "R57S", "P59H", "L68P", "P81Q"], "vif": ["K36N", "D45E"], "vpr": ["Q77H"], "vpu": ["T24S"]}, "labels": {"aa": "INT: Q136H; RT-p51: A36E, Y121D; RT-p66: A36E, Y121D, R530K; gp120: V57L, N159K, I197L, D294E, R316K, S318A, -384S, M406I, A412E, K418R, R448K; gp41: S125N, K144R, N166K, V266L, I307T, V322I, F340L; nef: K39Q, I43V, A53S, Q188E, H191R; p17: I7V, G11E; p6: S14G, K42R, N47S; rev: L13I, R14K, A68P, S84A; tat: K12N, R57S, P59H, L68P, P81Q; vif: K36N, D45E; vpr: Q77H; vpu: T24S", "clade": "CRF85_BC"}}, "children": [{"name": "MK258684", "node_attrs": {"div": 0.16781, "accession": "MK258684", "clade_membership": {"value": "CRF85_BC"}, "country": {"value": "CN"}, "date": {"value": 2012.0}, "Strain_name": {"value": "12YNHH21II"}, "LANL_subtype": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "C419T", "C434T", "C503A", "A518G", "C540G", "A548G", "T571A", "C572T", "A603G", "C604A", "A645G", "A666T", "T667G", "A699G", "-700A", "G701T", "A704G", "-714A", "C747A", "C749G", "C893A", "A977G", "A989G", "A1004G", "G1019A", "A1028C", "G1077A", "G1090A", "T1091C", "C1096A", "T1244C", "A1256G", "G1328A", "A1349G", "T1385C", "C1406T", "G1421A", "A1464C", "A1495G", "G1543A", "C1610T", "A1619G", "G1622A", "T1646C", "G1673A", "G1720A", "A1746G", "A1751G", "C1755A", "G1757A", "A1766G", "A1772G", "C1849T", "G1852A", "C1873T", "T1954C", "G2210A", "T2452A", "C2464T", "A2473G", "C2485T", "T2521C", "A2645G", "T2657C", "A2658T", "A2716G", "T2770C", "C2942A", "C2952T", "A3088G", "C3100T", "C3133T", "C3207T", "C3405T", "G3494A", "A3685G", "G3701T", "A3706C", "G3707A", "G3737A", "T3970C", "T3976C", "C4079T", "T4129G", "T4183C", "G4476T", "A4636G", "T4656C", "T4761G", "T4776A", "A4784C", "T4820G", "C4870G", "T4969G", "A5000G", "T5006A", "C5073T", "G5075A", "A5086G", "G5087C", "A5143G", "A5240G", "T5292C", "A5375G", "T5475C", "T5483C", "C5490T", "A5491T", "G5493A", "A5495G", "A5576T", "A5581G", "A5601G", "C5621T", "C5622T", "T5624A", "G5647T", "C5654G", "A5702G", "G5715A", "G5730A", "A5790G", "T5791G", "C5824T", "C5851A", "G5862C", "T5956G", "A5965G", "T6025G", "A6063G", "A6080G", "T6085G", "G6158A", "A6160T", "-6174G", "-6175C", "-6180A", "T6181G", "A6186T", "A6188G", "C6189T", "A6192G", "T6193C", "-6195A", "G6198A", "T6199A", "-6201C", "-6202C", "-6208T", "-6213A", "-6222A", "-6223A", "-6224C", "-6225A", "-6226T", "-6227G", "-6228A", "-6229A", "-6232A", "A6282C", "A6329G", "A6333C", "C6336T", "A6371G", "C6396G", "T6403C", "A6430T", "C6548T", "C6562T", "A6571G", "T6586A", "C6713A", "A6714C", "-6774A", "G6788A", "T6793C", "G6807C", "C6824T", "A6849C", "A6854G", "C6857A", "C6858A", "A6859T", "T6904C", "T6928C", "G6935A", "G6936A", "C6938T", "T6946A", "T6949G", "A6954G", "C6955G", "-6967A", "-6968T", "-6969A", "-6970C", "-6971A", "-6972T", "-6973G", "-6975C", "A6986G", "G6989A", "A6992T", "G6995A", "A6997T", "-6998T", "-6999C", "-7000A", "-7001A", "-7002A", "-7003C", "-7004A", "-7005G", "-7006C", "-7007A", "C7009G", "T7114C", "A7120C", "A7154-", "A7161T", "A7163G", "G7190A", "G7252A", "G7268C", "A7269C", "G7288A", "G7289C", "T7403C", "G7440A", "G7589A", "C7590A", "G7628A", "A7668G", "A7771T", "T7783C", "A7796T", "T7801A", "A7880G", "G7885A", "T7921G", "C7932T", "G7991A", "G7997A", "A8019G", "C8044A", "A8076G", "G8079T", "T8112C", "T8115C", "T8149A", "T8209C", "A8236G", "A8242C", "A8263T", "A8276G", "C8286G", "G8292A", "T8323A", "G8327A", "A8388G", "G8414C", "C8445A", "A8458G", "G8516A", "G8531A", "C8552T", "T8597C", "T8672G", "T8675C", "C8690T", "A8746T", "C8813T", "G8923T", "A9082G", "A9095G", "G9132A", "A9144G"], "RT-p51": ["D39N", "M184V", "Y188L", "L283I", "A286V", "A371V", "A437V"], "RT-p66": ["D39N", "M184V", "Y188L", "L283I", "A286V", "A371V", "A437V", "V467I", "V536L", "A538T", "V548I"], "gp120": ["G3A", "D34E", "N70S", "M76V", "H77Q", "E102N", "-105N", "-106V", "-107S", "-108N", "-109K", "-110T", "-111I", "-112V", "N113-", "-116S", "-124H", "K143T", "K159E", "N160T", "S161F", "I173V", "T181S", "Q287T", "-308D", "E312K", "H324Y", "K332T", "S335N", "G361N", "N364K", "Y367W", "-368F", "-370G", "-371T", "-372Y", "-373M", "-374T", "-375T", "-376D", "-379N", "-380S", "-381S", "-382S", "-383N", "-385T", "N435V", "T436A", "T437N", "D446N", "E472P", "E479Q"], "gp41": ["R46K", "M54L", "A96N", "D113N", "K122R", "K156N", "T165S", "I193V", "F206L", "P209L", "T210I", "D230N", "D232N", "N239S", "D247E", "H258R", "R259L", "V270A", "V271A", "E313D", "E320D", "L321F", "I325V", "A328G", "A342T"], "nef": ["I16V", "E24D", "Q39R", "Y135F", "R194M"], "p17": ["K18R", "L34V", "I61M", "Q69E", "F79Y", "T90E", "I104V", "I111C", "-122D", "-124K"], "p2": ["-11A", "M14L"], "p24": ["L6M", "M96I", "A116T", "S120N", "P122Q"], "p6": ["G14D", "T23A", "P26T"], "p7": ["K10R", "R26K"], "rev": ["I21F", "R48K", "R50K", "*101K"], "tat": ["V36A", "M39L", "K40R", "N67I", "I69V", "P75S"], "vif": ["K17R", "L59V", "L64I", "D78E", "T95S", "I128R", "K167S", "N186S"], "vpr": ["I46V", "I63T"], "vpu": ["T5I", "I6N", "V14L", "A16G", "K32R", "E60D", "L61Q", "S62E", "A63E", "M65A", "E66A", "M67F", "G68M", "-70E", "-71M", "-72G", "H73Y", "L82D"]}, "labels": {"aa": "RT-p51: D39N, M184V, Y188L, L283I, A286V, A371V, A437V; RT-p66: D39N, M184V, Y188L, L283I, A286V, A371V, A437V, V467I, V536L, A538T, V548I; gp120: G3A, D34E, N70S, M76V, H77Q, E102N, -105N, -106V, -107S, -108N, -109K, -110T, -111I, -112V, N113-, -116S, -124H, K143T, K159E, N160T, S161F, I173V, T181S, Q287T, -308D, E312K, H324Y, K332T, S335N, G361N, N364K, Y367W, -368F, -370G, -371T, -372Y, -373M, -374T, -375T, -376D, -379N, -380S, -381S, -382S, -383N, -385T, N435V, T436A, T437N, D446N, E472P, E479Q; gp41: R46K, M54L, A96N, D113N, K122R, K156N, T165S, I193V, F206L, P209L, T210I, D230N, D232N, N239S, D247E, H258R, R259L, V270A, V271A, E313D, E320D, L321F, I325V, A328G, A342T; nef: I16V, E24D, Q39R, Y135F, R194M; p17: K18R, L34V, I61M, Q69E, F79Y, T90E, I104V, I111C, -122D, -124K; p2: -11A, M14L; p24: L6M, M96I, A116T, S120N, P122Q; p6: G14D, T23A, P26T; p7: K10R, R26K; rev: I21F, R48K, R50K, *101K; tat: V36A, M39L, K40R, N67I, I69V, P75S; vif: K17R, L59V, L64I, D78E, T95S, I128R, K167S, N186S; vpr: I46V, I63T; vpu: T5I, I6N, V14L, A16G, K32R, E60D, L61Q, S62E, A63E, M65A, E66A, M67F, G68M, -70E, -71M, -72G, H73Y, L82D"}}}, {"name": "CRF85_BC_NODE_0000001", "node_attrs": {"div": 0.1357, "clade_membership": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A461C", "G547C", "C771G", "A968G", "C1094T", "A1145G", "C1491G", "C1628G", "C1795T", "C1985A", "A1990T", "G2602A", "A2715G", "A2956G", "G2957A", "G3151A", "A3202C", "T3496C", "A3547G", "G3686A", "A3718G", "C3779T", "T3943C", "G4036A", "T4655C", "A4684G", "A4805G", "T5072C", "G5185A", "G5463A", "A5499G", "A5607C", "T5797C", "G5865A", "T5929C", "C6115T", "C6563T", "C6612T", "C6855A", "A6931T", "-6978A", "-6982G", "-7151A", "-7152C", "-7156A", "C7174T", "G7390A", "C7463A", "G7552A", "A7953G", "G8188A", "T8264C", "T8265G", "A8457C", "T8505A", "G8506T", "G8678A", "G8864T"], "INT": ["I234S"], "RT-p51": ["E207G"], "RT-p66": ["E207G", "I484M", "V531I"], "gp120": ["G4K", "I126M", "Y145N", "A253V", "A334K"], "gp41": ["Y330C"], "nef": ["C55I", "E174D"], "p17": ["E42D", "G71A"], "p24": ["P14A"], "p6": ["T39I"], "p7": ["P9A"], "pro": ["P63T"], "rev": ["A114T"], "tat": ["C31S", "T82A"], "vif": ["K33R"]}, "labels": {"aa": "INT: I234S; RT-p51: E207G; RT-p66: E207G, I484M, V531I; gp120: G4K, I126M, Y145N, A253V, A334K; gp41: Y330C; nef: C55I, E174D; p17: E42D, G71A; p24: P14A; p6: T39I; p7: P9A; pro: P63T; rev: A114T; tat: C31S, T82A; vif: K33R"}}, "children": [{"name": "KU992931", "node_attrs": {"div": 0.15702999999999998, "accession": "KU992931", "clade_membership": {"value": "CRF85_BC"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14CN_SCYB3"}, "LANL_subtype": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": 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L34V, I61M, K62N, Q69K, T90K, K110Q, A118E; p2: -7T, T8N, S10A; p24: L6I; p6: L1I, G14E, F15A, R16-, F17-, E20-, E21-, T22-, Q28E, P30Q, -35A, P37-; pro: K70R; rev: E10A, K14Q, R17K, P31L, K39R, A47E, A84V, S106P, G111E; tat: Q60P, P68L, P73S; vif: V51I, V65I, L91M, R92K, I98L, M109I, V129G, P131H, K158R; vpr: G41S; vpu: A3L, L4S, I6L, L7T, A15V, A63T"}}}, {"name": "CRF85_BC_NODE_0000002", "node_attrs": {"div": 0.14129, "clade_membership": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "G435T", "T992C", "C1541A", "G1664A", "G2182A", "A2191G", "G2524A", "A2530G", "A2699G", "A3079G", "A3196G", "T3343C", "T3359C", "A3880G", "T4165C", "G4769A", "G5267A", "G5614A", "C5663T", "A5793G", "C5916A", "A5918G", "A5921C", "G6267A", "A6273G", "A6326G", "T6328G", "G6773-", "A6775-", "G6776-", "A6777-", "T6778-", "G7026A", "C7096T", "G7162T", "C7170T", "T7801G", "C7917T", "T7929C", "T8182G", "C8213T", "G8254A", "A8409G", "T8495A", "G8880A", "A8887G"], "RT-p51": ["I202V", "A288T"], "RT-p66": ["I202V", "A288T"], "gp120": ["T21N", "T22A", "T23P", "-105N", "-106V", "-111N", "-115S", "R138K", "K140R", "N158E", "E307-", "A318G", "S335P", "R391K", "-433G", "T439I"], "gp41": ["S205L", "L304F"], "nef": ["T23A", "F81Y", "V180I", "K182R"], "p6": ["A12E"], "rev": ["S112A"], "vpr": ["A55T"], "vpu": ["A3T", "A19V"]}, "labels": {"aa": "RT-p51: I202V, A288T; RT-p66: I202V, A288T; gp120: T21N, T22A, T23P, -105N, -106V, -111N, -115S, R138K, K140R, N158E, E307-, A318G, S335P, R391K, -433G, T439I; gp41: S205L, L304F; nef: T23A, F81Y, V180I, K182R; p6: A12E; rev: S112A; vpr: A55T; vpu: A3T, A19V"}}, "children": [{"name": "KU992928", "node_attrs": {"div": 0.1611, "accession": "KU992928", "clade_membership": {"value": "CRF85_BC"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14CN_SCYB1"}, "LANL_subtype": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G224A", "T263A", "-280A", "C281-", "A418G", "G463A", "T485A", 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E125-, M126-, V136I, K141Q, N145W, A146S, E241G, K319R, K332E, H346F, G361S, -368M, N369S, -370N, -371G, -374T, -375Y, -376M, -377S, -378N, -379G, -380T, -381G, -382D, -383N, -385T, E412A, N434G, E472K, R476K; gp41: V2A, I24V, T25A, T109E, D113N, T130I, R133N, D137V, R144K, I177L, D217G, I235V, C253F, L254R, L260W, A268T, L321S, C326F; nef: E24A, S53N, K92R, E158D; p1: W6L; p17: H28R, R43K, I60L, Q65H, Q69P, F79Y, R95K, A118K, K119T, -127G; p2: -11A; p24: I15L; p6: -18A, -19E, E20-, E21-, S47N; pro: G16E; rev: S5E, E6-, S8R, A11E, K14R, H53R, S54A, I59V, T62A, S86N, *101K, K116E; tat: K51-, Q54P, S57R; vif: T95N, I98V, N140T, K141T, K158R, I159R; vpr: T19A, P37Q, G41S, Y45H, V84L, S96P; vpu: T5S, L7V, V10I, S24G, R41K, E58D"}}}, {"name": "CRF85_BC_NODE_0000003", "node_attrs": {"div": 0.14315, "clade_membership": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A836G", "T858C", "A989G", "T1990C", "G2329A", "A3664G", "A5240G", "G5629T", "T5836G", "G6074A", "A6124T", "-6195G", "-6221A", "-6227G", "-6228A", "-6232G", "T6287A", "T6334C", "G6638C", "A6736C", "A6767G", "G6947A", "A6976-", "A6994T", "G6995C", "G6996A", "-7153A", "-7155A", "A7640G", "A7677G", "A7756G"], "gp120": ["D74N", "-114S", "E262Q", "E294D", "I305V", "G365S", "S384-"], "gp41": ["N125S"], "p17": ["V7I"], "vpr": ["I46V"], "vpu": ["A8S", "W77G"]}, "labels": {"aa": "gp120: D74N, -114S, E262Q, E294D, I305V, G365S, S384-; gp41: N125S; p17: V7I; vpr: I46V; vpu: A8S, W77G"}}, "children": [{"name": "KU992930", "node_attrs": {"div": 0.15955, "accession": "KU992930", "clade_membership": {"value": "CRF85_BC"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14CN_SCYB20"}, "LANL_subtype": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C419T", "T571A", "-700C", "A774T", "T885C", "T917C", "G968A", "A977G", "G1002A", "T1061C", "C1115A", "A1400G", "G1450A", "G1458A", "C1490T", "G1543A", "G1628A", "C1714A", "C1768T", "G1819A", "C1849T", "A1879G", "A1985G", "A2194G", "T2453C", "G2459A", "C2533T", "A2592G", "A2677G", "G2699A", "G2715A", "T2996C", "A3088G", "G3091A", "C3274T", "G3292A", "G3463A", "T3499A", "A3616C", "C3691T", "G3718A", "A3906G", "G3952A", "A4222G", "G4294A", "G4677A", "G4685A", "A4804T", "A4814G", "A4819C", "A4878C", "A4883C", "A5021G", "A5065G", "A5210G", "A5267G", "G5370A", "A5385G", "G5403A", "G5437C", "C5444A", "T5467A", "A5491G", "A5525G", "A5537C", "A5620G", "C5651T", "T5663C", "G5715A", "G5717A", "A5718G", "C5727T", "C5792T", "C5797T", "G5830A", "C5831A", "G5848A", "T5852G", "C5859T", "T5860G", "G5864A", "T5887C", "T6023A", "A6160T", "-6174G", "A6176-", "A6177-", "T6178-", "A6179-", "C6183G", "A6188G", "C6189G", "T6193C", "A6200-", "-6205G", "-6206A", "-6207T", "-6208A", "G6212A", "-6213G", "T6216C", "G6217T", "-6219A", "-6220C", "-6222C", "-6223A", "-6224G", "-6225G", "-6226G", "-6229A", "A6268G", "A6275G", "A6323G", "C6545T", "C6548T", "A6605G", "T6612C", "A6712G", "G6743A", "A6781C", "A6785C", "C6797G", "A6811G", "A6817G", "C6819T", "G6935A", "G6936A", "T6957C", "-6967A", "-6968T", "-6969A", "-6970C", "-6971T", "-6972C", "-6973T", "-6975A", "-6976T", "-6977G", "-6979G", "-6980T", "-6981A", "A6987T", "G6989C", "T6991A", "A6992G", "A6997T", "C7020A", "A7026G", "G7132A", "A7147T", "A7148G", "A7154G", "A7156G", "G7160A", "T7257C", "G7268A", "C7590A", "G7628A", "A7769G", "G7790A", "A7791G", "G7801A", "A7840G", "T7852A", "T7867C", "G7944A", "G7952A", "G7961A", "A8023G", "A8076G", "T8213C", "C8223T", "C8264A", "C8266T", "A8276C", "A8284G", "T8321C", "G8327A", "C8328G", "A8402G", "A8408T", "C8445A", "T8492G", "T8501G", "G8520A", "A8746T", "G8807T", "G8808T", "T8847A", "C8873T", "G8917A", "-8970G", "-8971A", "-8972C", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A", "C9075T", "G9117A"], "INT": ["Q44R"], "RT-p51": ["E122K", "K166R", "V202I", "G207E"], "RT-p66": ["E122K", "K166R", "V202I", "G207E", "Q507H"], "gp120": ["A2V", "L57I", "E102D", "-107S", "-108R", "-112G", "-124G", "K141E", "N157D", "N251D", "V253A", "D297N", "-307N", "K309-", "N311H", "Q315E", "A322V", "G361N", "-368Y", "N369-", "P389Q", "K391R", "N432V", "T436N", "V468A", "E472K"], "gp41": ["A96D", "K156E", "D163S", "G214E", "D217S", "G220R", "H258R", "F304L", "T307I", "L321S", "I325L", "A342R"], "nef": ["I20M", "R22S", "S53R", "A60T", "Y81F", "Y135F", "E155D", "A156S", "C169S", "R192K"], "p17": ["F79Y"], "p2": ["-7T", "T8N", "S10-", "-12T"], "p24": ["I15L", "V91I", "D128E"], "p6": ["P30L", "S47N"], "p7": ["R26K"], "pro": ["T63A"], "rev": ["R4G", "S8R", "R35K", "R38Q", "I59V"], "tat": ["A21P", "T23N", "M39V", "K50R", "Q54P", "G79R"], "vif": ["V31I", "Q73L", "D78A", "I98L", "E99D", "K160R"], "vpr": ["R36G", "T55A", "A89T", "S94G"], "vpu": ["T5A", "A15V", "V19A", "R37K", "E60D", "L61Q", "S62E", "A63E", "M65L", "E66A", "M67F", "G68M", "-70E", "-71M", "-72G", "A75N", "D81N", "L82R"]}, "labels": {"aa": "INT: Q44R; RT-p51: E122K, K166R, V202I, G207E; RT-p66: E122K, K166R, V202I, G207E, Q507H; gp120: A2V, L57I, E102D, -107S, -108R, -112G, -124G, K141E, N157D, N251D, V253A, D297N, -307N, K309-, N311H, Q315E, A322V, G361N, -368Y, N369-, P389Q, K391R, N432V, T436N, V468A, E472K; gp41: A96D, K156E, D163S, G214E, D217S, G220R, H258R, F304L, T307I, L321S, I325L, A342R; nef: I20M, R22S, S53R, A60T, Y81F, Y135F, E155D, A156S, C169S, R192K; p17: F79Y; p2: -7T, T8N, S10-, -12T; p24: I15L, V91I, D128E; p6: P30L, S47N; p7: R26K; pro: T63A; rev: R4G, S8R, R35K, R38Q, I59V; tat: A21P, T23N, M39V, K50R, Q54P, G79R; vif: V31I, Q73L, D78A, I98L, E99D, K160R; vpr: R36G, T55A, A89T, S94G; vpu: T5A, A15V, V19A, R37K, E60D, L61Q, S62E, A63E, M65L, E66A, M67F, G68M, -70E, -71M, -72G, A75N, D81N, L82R"}}}, {"name": "CRF85_BC_NODE_0000004", "node_attrs": {"div": 0.14414, "clade_membership": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C4978A", "-6222A", "A6974-", "A7151G", "G7885A"], "gp120": ["-112V"], "vif": ["P131H"]}, "labels": {"aa": "gp120: -112V; vif: P131H"}}, "children": [{"name": "CRF85_BC_NODE_0000005", "node_attrs": {"div": 0.14612, "clade_membership": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G619A", "-700C", "A1904G", "C2503T", "A2957G", "G3398A", "A3866G", "T5313C", "G5493A", "G5864A", "T6190A", "A6194G", "T6199C", "-6201G", "-6202T", "-6206G", "-6213T", "T6261A", "C6955G", "T6957C", "A7089C", "G7953A", "A8019G", "G8349A", "T8584A", "A8717T", "T8864G"], "INT": ["I31V"], "RT-p51": ["T288A", "A435T"], "RT-p66": ["T288A", "A435T"], "gp120": ["S114G", "-116S", "V136E", "E412A"], "gp41": ["K156N", "N239S", "L340F"], "nef": ["D174E"], "p17": ["R95Q"], "pro": ["I36V"], "tat": ["S31C", "A82T"], "vpr": ["I70T"]}, "labels": {"aa": "INT: I31V; RT-p51: T288A, A435T; RT-p66: T288A, A435T; gp120: S114G, -116S, V136E, E412A; gp41: K156N, N239S, L340F; nef: D174E; p17: R95Q; pro: I36V; tat: S31C, A82T; vpr: I70T"}}, "children": [{"name": "MK258683", "node_attrs": {"div": 0.15969, "accession": "MK258683", "clade_membership": {"value": "CRF85_BC"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14YNBS57II"}, "LANL_subtype": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A380T", "T424G", "G455A", "A530G", "G534T", "A576G", "A585G", "C586T", "A603G", "G740A", "C992T", "G1002A", "G1491A", "A1500G", "G1628A", "G1687A", "A1691G", "C1714A", "G1760A", "C1768T", "G1861A", "A2014C", "G2293A", "G2470A", "T2499G", "A2534G", "G2567T", "G2600C", "G2610T", "A2808G", "C3032A", "T3045C", "A3279G", "G3487A", "A3796G", "G3880A", "T3976C", "C4585A", "A4860G", "C4870A", "A5033G", "A5267G", "A5335G", "T5356A", "G5363A", "A5462G", "T5472A", "A5575G", "C5579T", "G5599A", "A5614G", "T5629G", "A5790G", "C5792T", "T5923G", "A5957G", "T6021A", "T6025G", "G6158A", "T6163-", "A6164-", "C6165-", "A6166-", "A6167-", "A6168-", "T6169-", "G6170-", "T6171-", "T6172-", "A6173-", "A6176-", "A6177-", "T6178-", "A6179-", "A6182G", "A6188G", "C6189T", "-6203A", "-6204G", "-6205T", "-6207G", "-6208T", "T6210A", "G6211T", "A6214T", "T6216C", "G6217C", "-6218C", "-6219C", "-6220C", "-6223T", "-6224A", "-6225A", "-6226A", "-6229A", "A6302G", "C6394T", "A6448G", "A6597G", "G6704A", "-6773A", "-6774C", "-6775A", "A6779-", "A6780-", "A6781-", "A6786G", "G6788A", "G6799A", "G6806A", "T6808C", "A6810G", "C6833T", "A6854G", "A6910G", "T6925C", "A6926G", "T6964G", "-6967A", "-6968T", "-6969A", "-6970C", "-6971A", "-6972T", "-6973G", "-6974T", "-6975T", "-6976T", "-6977A", "-6979T", "-6980G", "-6981G", "G6982A", "C6984T", "A6986G", "T6988A", "T6991C", "C6993A", "C6995T", "A6996C", "-6998A", "-6999G", "-7000C", "-7003T", "-7004C", "-7005A", "-7006C", "-7007T", "C7009A", "A7010-", "G7057A", "A7072G", "G7132A", "T7150G", "C7152G", "A7154G", "T7162G", "T7406C", "A7549T", "G7550A", "A7552G", "T7554A", "C7594A", "G7628A", "A7659G", "A7688T", "A7689C", "A7691T", "G7717A", "G7756T", "A7770G", "A7771T", "A7782G", "C7843A", "A7998G", "G8130A", "T8149A", "C8223T", "G8243A", "T8279G", "G8350A", "G8409A", "G8453A", "G8561A", "G8590C", "C8715G", "A8746T", "G9024A", "G9132A", "A9144G"], "INT": ["D270E"], "RT-p51": ["I135R", "N147D", "A158S", "E169Q", "R172I", "K238R", "P313T", "V317A", "K395R"], "RT-p66": ["I135R", "N147D", "A158S", "E169Q", "R172I", "K238R", "P313T", "V317A", "K395R"], "gp120": ["T35A", "M56K", "E102K", "T104A", "N105-", "V106-", "-117S", "-118G", "-119N", "-120V", "-121T", "-122P", "-123N", "-124K", "R150G", "N248S", "-282R", "G284-", "-307T", "K309-", "N311S", "E312K", "G318S", "K319R", "P326S", "K334E", "N358D", "-368M", "-370S", "I386-", "I406M", "N432K", "N434E"], "gp41": ["S35P", "G83R", "I84N", "Q119R", "N129S", "T130S", "N156S", "N160S", "D232G", "R276H", "T307I", "G314R", "L321R", "C326G"], "nef": ["G3N", "A23T", "G83A", "Q125D", "Y135F"], "p17": ["K15N", "M30R", "A67S", "T81A", "T84V", "T90A"], "p2": ["-11A"], "p24": ["V91I"], "p6": ["S3N", "P30L"], "p7": ["A9T", "I12V"], "rev": ["*101K"], "tat": ["K29R", "F32L", "M39I", "N67D", "P68L"], "vif": ["R92G", "T95N"], "vpr": ["T55A", "H77R", "V84E"], "vpu": ["T3A", "S8A", "S62L"]}, "labels": {"aa": "INT: D270E; RT-p51: I135R, N147D, A158S, E169Q, R172I, K238R, P313T, V317A, K395R; RT-p66: I135R, N147D, A158S, E169Q, R172I, K238R, P313T, V317A, K395R; gp120: T35A, M56K, E102K, T104A, N105-, V106-, -117S, -118G, -119N, -120V, -121T, -122P, -123N, -124K, R150G, N248S, -282R, G284-, -307T, K309-, N311S, E312K, G318S, K319R, P326S, K334E, N358D, -368M, -370S, I386-, I406M, N432K, N434E; gp41: S35P, G83R, I84N, Q119R, N129S, T130S, N156S, N160S, D232G, R276H, T307I, G314R, L321R, C326G; nef: G3N, A23T, G83A, Q125D, Y135F; p17: K15N, M30R, A67S, T81A, T84V, T90A; p2: -11A; p24: V91I; p6: S3N, P30L; p7: A9T, I12V; rev: *101K; tat: K29R, F32L, M39I, N67D, P68L; vif: R92G, T95N; vpr: T55A, H77R, V84E; vpu: T3A, S8A, S62L"}}}, {"name": "KU992932", "node_attrs": {"div": 0.16246, "accession": "KU992932", "clade_membership": {"value": "CRF85_BC"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14CN_SCYB4"}, "LANL_subtype": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G480A", "A488G", "T495G", "C588A", "C604G", "G615A", "A645G", "A647G", "A690C", "A758G", "T767C", "A774T", "C926T", "G959A", "C1040T", "C1098G", "A1150G", "A1274G", "G1328A", "G1450A", "T1652C", "A1725-", "G1726-", "G1727-", "T1728-", "-1731G", "-1732G", "-1733G", "-1734T", "G1737A", "A1766C", "A1770G", "G1773-", "A1774-", "C1775-", "A1776-", "G1777-", "G1778-", "G1779-", "A1780-", "A1781-", "A1985G", "A2005G", "A2113T", "C2149T", "G2210A", "A2215C", "G2413A", "A2498G", "T2581C", "C2589T", "T2632C", "G2714A", "A2896G", "G2925A", "G2956A", "C2960T", "A3027G", "A3124G", "T3165G", "C3202A", "G3250A", "G3264A", "T3310C", "G3334A", "G3439A", "A3448G", "T3649C", "G3664A", "G3756A", "T3856C", "G3896A", "T4132C", "T4147G", "T4381C", "C4471T", "A4661G", "T4676C", "G4677A", "T4678C", "G4684A", "T4858G", "C4889A", "C4943T", "A5059G", "C5149T", "A5150G", "G5153C", "G5188A", "C5251T", "A5272G", "T5275G", "A5388G", "A5421G", "T5436C", "T5492C", "A5620C", "G5644A", "T5731A", "G5839A", "A5863G", "A5866C", "C5917A", "A6030G", "-6174C", "-6175A", "A6179G", "-6180T", "A6184T", "-6203G", "-6204T", "-6205G", "-6207T", "-6208A", "-6218A", "-6219A", "-6220G", "-6223A", "-6224T", "-6225G", "-6226G", "C6252T", "A6275C", "C6278A", "A6323G", "T6325A", "G6331T", "C6364T", "A6605G", "C6736T", "G6743A", "A6785G", "A6848G", "T6932A", "G6936A", "T6956C", "-6979G", "-6980T", "-6981A", "A6983T", "A6987T", "G6989C", "T6991A", "A6997T", "C7014T", "A7025C", "A7148G", "G7151A", "A7156T", "C7264T", "G7440A", "T7591C", "C7629A", "G7640A", "A7641G", "A7693C", "G7705A", "A7711G", "G7756A", "A7771C", "A7791G", "A7995G", "G8017A", "G8036A", "C8065T", "C8080A", "G8265T", "C8320A", "A8337T", "G8356T", "A8486G", "A8489C", "A8505G", "G8516A", "A8701T", "A8816C", "C8871T", "T8881C", "C8930T", "T9074G"], "INT": ["D41N"], "RT-p51": ["E6D", "D39N", "E40D", "I135V", "T165I", "G207R", "R277K", "K311R", "M357R", "R390K"], "RT-p66": ["E6D", "D39N", "E40D", "I135V", "T165I", "G207R", "R277K", "K311R", "M357R", "R390K", "S554N"], "gp120": ["K4N", "N21K", "L57F", "E59G", "-107T", "-108N", "-109V", "-110T", "V112T", "A133V", "K141Q", "Q142K", "N157E", "K159N", "N251D", "D297N", "N311D", "K332E", "S360T", "G361D", "-368K", "-370G", "-371T", "T387M", "K391Q", "N432D", "G433T", "T436D"], "gp41": ["R46K", "T109E", "D113S", "D163G", "K231R", "A245T", "Q345L"], "nef": ["G3S", "W5L", "I55V", "Y120F", "Q125H", "E158D", "H177Y", "I180T"], "p17": ["G49S", "S54A", "L85I", "T90R", "V94I", "I104V", "K119Q"], "p2": ["-7T", "T8N", "S10A"], "p24": ["I15L", "P123A", "K140R"], "p6": ["E12A", "R16-", "F17-", "-18G", "-19F", "E20K", "E29D", "K31E", "D32-", "R33-", "E34-"], "pro": ["T63A"], "rev": ["E57K", "C63Y", "L73F", "L78I"], "tat": ["M39T"], "vif": ["V31T", "R33K", "L91W", "K158R", "T188M", "M189I"], "vpr": ["N16D", "E17Q", "R95G"], "vpu": ["T5P", "V13I", "L42I", "D78N"]}, "labels": {"aa": "INT: D41N; RT-p51: E6D, D39N, E40D, I135V, T165I, G207R, R277K, K311R, M357R, R390K; RT-p66: E6D, D39N, E40D, I135V, T165I, G207R, R277K, K311R, M357R, R390K, S554N; gp120: K4N, N21K, L57F, E59G, -107T, -108N, -109V, -110T, V112T, A133V, K141Q, Q142K, N157E, K159N, N251D, D297N, N311D, K332E, S360T, G361D, -368K, -370G, -371T, T387M, K391Q, N432D, G433T, T436D; gp41: R46K, T109E, D113S, D163G, K231R, A245T, Q345L; nef: G3S, W5L, I55V, Y120F, Q125H, E158D, H177Y, I180T; p17: G49S, S54A, L85I, T90R, V94I, I104V, K119Q; p2: -7T, T8N, S10A; p24: I15L, P123A, K140R; p6: E12A, R16-, F17-, -18G, -19F, E20K, E29D, K31E, D32-, R33-, E34-; pro: T63A; rev: E57K, C63Y, L73F, L78I; tat: M39T; vif: V31T, R33K, L91W, K158R, T188M, M189I; vpr: N16D, E17Q, R95G; vpu: T5P, V13I, L42I, D78N"}}}]}, {"name": "CRF85_BC_NODE_0000006", "node_attrs": {"div": 0.14545, "clade_membership": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A647G", "A694C", "G695T", "C697A", "T698C", "C747A", "T6023C", "A8486G"], "gp120": ["-308S", "-378N", "-380T", "-381G"], "p17": ["I104M"], "p24": ["L6I"]}, "labels": {"aa": "gp120: -308S, -378N, -380T, -381G; p17: I104M; p24: L6I"}}, "children": [{"name": "KU992934", "node_attrs": {"div": 0.16299, "accession": "KU992934", "clade_membership": {"value": "CRF85_BC"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14CN_SCYB7"}, "LANL_subtype": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A302T", "A460G", "A518G", "T614G", "C684A", "A699G", "-700G", "G703-", "A704-", "C893T", "C897T", "C992T", "T1103G", "C1331T", "A1464C", "G1472A", "G1474A", "G1553A", "A1686C", "C1714A", "A1770C", "G1804A", "G1861A", "A1904G", "C1990T", "A2023T", "T2302C", "G2459A", "G2470A", "T2605G", "A2611G", "C2626T", "G2683A", "G2704A", "T2758C", "A2809G", "A2815G", "T2905C", "T3045C", "A3080G", "G3094A", "G3097A", "C3100T", "A3124G", "C3175A", "A3192G", "G3221T", "C3252T", "G3264A", "G3292T", "G3520A", "T3644A", "G3880A", "G3907A", "T4110C", "A4333G", "G4335A", "A4338G", "A4495G", "G4677A", "G4684A", "A4697G", "C4967A", "A4968G", "A5096G", "T5102C", "G5134A", "A5146T", "C5149T", "A5179G", "T5237C", "G5257T", "T5391C", "T5457C", "T5472A", "A5560C", "A5576T", "A5628T", "G5647A", "G5668A", "A5702G", "G5730A", "A5748T", "A5790G", "G5793A", "G5836T", "G5839C", "G5862T", "C5884G", "T6026G", "G6029A", "A6032G", "G6133A", "-6174G", "-6175C", "A6177G", "T6178A", "-6180G", "A6188G", "C6189T", "A6192G", "T6193C", "A6200-", "A6209-", "T6210-", "G6212A", "-6213T", "G6217A", "-6218G", "-6219T", "-6220A", "-6223A", "-6224G", "-6225A", "-6226A", "-6229A", "G6232A", "C6256T", "C6278A", "A6279C", "G6280A", "A6288C", "G6331A", "A6471G", "T6536A", "G6577A", "C6607T", "T6641G", "C6736A", "G6767A", "-6773A", "-6774A", "-6775A", "-6776A", "-6777G", "-6778T", "A6805G", "A6823T", "A6825T", "A6848G", "T6853C", "C6955G", "T6956C", "-6979G", "-6980G", "-6981A", "A6987T", "G6989C", "T6991A", "T7018A", "C7152T", "A7157G", "A7161C", "T7162A", "C7164A", "A7197G", "A7269G", "G7309T", "A7313C", "A7373C", "A7390G", "T7622A", "C7623A", "G7628A", "C7699T", "A7700G", "G7701A", "G7712A", "C7714A", "T7715G", "G7734A", "A7742G", "T7747A", "C7935A", "G7987A", "G7997A", "C8223T", "G8265T", "G8280A", "T8323A", "C8328T", "A8363G", "A8413G", "G8429A", "C8471T", "A8489C", "G8516A", "T8543A", "A8816C", "T8881C", "G8923T", "A8969C", "-8970G", "A8980-", "C9006G"], "INT": ["V112A", "R187K", "K188R"], "RT-p51": ["E122K", "V317A", "I329V", "K366R", "A376S", "T386I", "R390K", "E399D"], "RT-p66": ["E122K", "V317A", "I329V", "K366R", "A376S", "T386I", "R390K", "E399D", "L517I"], "gp120": ["G3V", "K4E", "L58V", "E59K", "N60D", "-107S", "-108R", "-109S", "-110T", "N113S", "M126I", "Q142T", "N145T", "N206S", "S228T", "S263A", "D294E", "V305I", "-307K", "E323D", "H324L", "K332E", "S365T", "G433V", "N434G", "N435K", "T436D", "T437K", "K448R", "E472G"], "gp41": ["I4L", "I24L", "S107N", "R133E", "D137K", "S138A", "R144K", "K147E", "D148E", "P211Q", "D217G", "D232N", "T307I", "C326Y", "A342V"], "nef": ["E24G", "Y81F", "E158D", "I180T", "R194M"], "p17": ["D42G", "I61M", "D93E", "Q117K", "-122D", "-124E"], "p2": ["-11A", "M14L"], "p6": ["S3R", "K31Q", "R42K"], "p7": ["R3K"], "pro": ["I36V"], "rev": ["I21F", "A47T", "R50K"], "tat": ["S31C", "F32L", "S62R", "N67I"], "vif": ["V31I", "R33K", "H127Q", "I128V", "R183H", "H187L", "T188I"], "vpr": ["Y45H", "S96P"], "vpu": ["L7F", "V14I", "V21I", "K32R", "R47S", "G77W", "D78H"]}, "labels": {"aa": "INT: V112A, R187K, K188R; RT-p51: E122K, V317A, I329V, K366R, A376S, T386I, R390K, E399D; RT-p66: E122K, V317A, I329V, K366R, A376S, T386I, R390K, E399D, L517I; gp120: G3V, K4E, L58V, E59K, N60D, -107S, -108R, -109S, -110T, N113S, M126I, Q142T, N145T, N206S, S228T, S263A, D294E, V305I, -307K, E323D, H324L, K332E, S365T, G433V, N434G, N435K, T436D, T437K, K448R, E472G; gp41: I4L, I24L, S107N, R133E, D137K, S138A, R144K, K147E, D148E, P211Q, D217G, D232N, T307I, C326Y, A342V; nef: E24G, Y81F, E158D, I180T, R194M; p17: D42G, I61M, D93E, Q117K, -122D, -124E; p2: -11A, M14L; p6: S3R, K31Q, R42K; p7: R3K; pro: I36V; rev: I21F, A47T, R50K; tat: S31C, F32L, S62R, N67I; vif: V31I, R33K, H127Q, I128V, R183H, H187L, T188I; vpr: Y45H, S96P; vpu: L7F, V14I, V21I, K32R, R47S, G77W, D78H"}}}, {"name": "CRF85_BC_NODE_0000007", "node_attrs": {"div": 0.14675, "clade_membership": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G1543A", "-6202C", "-6203G", "-6204G", "G6806A", "A6810G", "G6962-", "G6963-", "T6964-", "A6965-", "C6966-", "A6978-", "A6983T", "A6985T", "T6994A", "C6995G", "A6996G", "-6998G", "-7001A", "-7003C", "-7004T", "-7005C", "-7006A", "G7107A", "C7152A", "A7156T", "A7689C", "C8264T", "G8823A", "A8880G"], "gp120": ["-384S", "R418K", "N432K"], "gp41": ["N129S"], "nef": ["D161N", "I180V"], "p7": ["R26K"]}, "labels": {"aa": "gp120: -384S, R418K, N432K; gp41: N129S; nef: D161N, I180V; p7: R26K"}}, "children": [{"name": "KU992936", "node_attrs": {"div": 0.16305999999999998, "accession": "KU992936", "clade_membership": {"value": "CRF85_BC"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14CN_SCYB12"}, "LANL_subtype": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "A206G", "A217C", "A356T", "T424G", "A576T", "C577T", "G644A", "A675-", "A676-", "A677-", "A678-", "C679-", "A680-", "C681-", "A682-", "G683-", "C684-", "A685-", "G686-", "G687-", "C688-", "A689-", "A690-", "A691C", "T695A", "A697G", "-700A", "G701A", "G702A", "-705C", "-706A", "-707C", "-708T", "-709G", "-710C", "-711G", "-712G", "-713G", "-714A", "C723G", "A724T", "G1002A", "A1025G", "G1450A", "C1490T", "A1536C", "C1550T", "C1615T", "G1628A", "G1719T", "G1720T", "T1722-", "T1723-", "C1724-", "A1725-", "G1726-", "G1727-", "T1728-", "T1735-", "C1736-", "G1763-", "G1764-", "A1765-", "A1766-", "C1767-", "C1768-", "G1769-", "A1770-", "A1771-", "C1788A", "G1852A", "A1904C", "A1908G", "A2763G", "A2884G", "G2956A", "A2957G", "A2971C", "C2975T", "A3099G", "G3154A", "G3166A", "G3196A", "G3214A", "G3385A", "A3409G", "A3449C", "A3524G", "G3547A", "A3556G", "A3616T", "G3791A", "G3825A", "A3923G", "T4177G", "T4198C", "G4564A", "G4677A", "A4769T", "C4841T", "A4936G", "A5050G", "A5233G", "C5251T", "A5312G", "C5444A", "T5467A", "T5492C", "G5499A", "A5574G", "A5694G", "A5696G", "T5697G", "G5793A", "A5828G", "G5836T", "G5839A", "A5863G", "G5864A", "T5899A", "C5913T", "C5919T", "T6021A", "T6025G", "T6101A", "A6167-", "A6168-", "T6169-", "G6170-", "T6171-", "T6172-", "A6173-", "A6179G", "-6180T", "C6183G", "A6184C", "A6186G", "C6189G", "A6192G", "G6195A", "-6201C", "-6205G", "-6206G", "-6207A", "-6208A", "-6213A", "A6221-", "A6222-", "G6227-", "A6228-", "A6230-", "T6231-", "G6232-", "A6279G", "G6303A", "T6325G", "A6346G", "T6355C", "G6368A", "A6395T", "A6430T", "A6450T", "A6573G", "A6605G", "-6773G", "-6774T", "-6775T", "-6776A", "-6777G", "-6778T", "A6801G", "G6807A", "T6808G", "A6811T", "C6819G", "A6848G", "A6947G", "G6948A", "T6953C", "T6958-", "A6959-", "A6960-", "T6961-", "A6990G", "T6991C", "-6999C", "-7000A", "-7002A", "-7007A", "A7037G", "T7150A", "A7153T", "G7160A", "A7161C", "T7174C", "G7459A", "A7679G", "A7688T", "G7760A", "G7801T", "G7952A", "A7971C", "C8092A", "T8112C", "G8216A", "A8263G", "G8280A", "C8286G", "T8298C", "T8323G", "A8378G", "G8385A", "G8418A", "T8567A", "T8568C", "T8584A", "A8636T", "A8647G", "C8648G", "C8669T", "A8701T", "A8717C", "A8729G", "G8739A", "T8740C", "T8829A", "A8844G", "A8870C"], "INT": ["D6N", "S17N", "M50V"], "RT-p51": ["K223R", "T288A", "P294S", "D335G", "M357I"], "RT-p66": ["K223R", "T288A", "P294S", "D335G", "M357I", "I452L", "T477A", "M484I", "Q507H"], "gp120": ["A20V", "A22V", "M56K", "L83I", "N105-", "V106-", "N113S", "-116S", "-117N", "-118S", "-119T", "-120P", "-121Q", "-122G", "-123E", "-124M", "Q142R", "R150K", "N157K", "A172T", "T181S", "K199M", "E240G", "N251D", "-307V", "K316R", "G318K", "K319S", "A322G", "K332E", "S365D", "Y367H", "-368L", "N369-", "-377S", "-379G", "-382A", "-383N", "-385T", "I395V", "G433D"], "gp41": ["T109A", "N126D", "D153N", "K166N", "D217S", "E223A", "F263L", "V270A", "D305N", "L321C", "C326Y", "A328G", "I332T"], "nef": ["A15T", "A26T", "E98D", "Y102W", "Y120F", "Q125H", "V133T", "C163S", "M168V", "E176D"], "p17": ["M30R", "T81L", "Q112-", "Q113-", "K114-", "T115-", "Q116-", "Q117-", "A118-", "K119-", "-126G", "-127K", "Q130V"], "p2": ["-7T", "T8N", "S10A"], "p24": ["V91I"], "p6": ["G14-", "F15-", "R16-", "F17-", "E20-", "E21-", "E29D", "P30R", "K31E", "D32T", "R33-", "E34-", "P37-"], "p7": ["I24L", "T50I"], "pro": ["I36L", "N37S"], "rev": ["K20R", "R35K", "H82N"], "tat": ["T23N", "M39T"], "vif": ["V31I", "E61D", "D117G", "K155R"], "vpr": ["I70V"], "vpu": ["Y30W", "H74R", "G77W", "D78N"]}, "labels": {"aa": "INT: D6N, S17N, M50V; RT-p51: K223R, T288A, P294S, D335G, M357I; RT-p66: K223R, T288A, P294S, D335G, M357I, I452L, T477A, M484I, Q507H; gp120: A20V, A22V, M56K, L83I, N105-, V106-, N113S, -116S, -117N, -118S, -119T, -120P, -121Q, -122G, -123E, -124M, Q142R, R150K, N157K, A172T, T181S, K199M, E240G, N251D, -307V, K316R, G318K, K319S, A322G, K332E, S365D, Y367H, -368L, N369-, -377S, -379G, -382A, -383N, -385T, I395V, G433D; gp41: T109A, N126D, D153N, K166N, D217S, E223A, F263L, V270A, D305N, L321C, C326Y, A328G, I332T; nef: A15T, A26T, E98D, Y102W, Y120F, Q125H, V133T, C163S, M168V, E176D; p17: M30R, T81L, Q112-, Q113-, K114-, T115-, Q116-, Q117-, A118-, K119-, -126G, -127K, Q130V; p2: -7T, T8N, S10A; p24: V91I; p6: G14-, F15-, R16-, F17-, E20-, E21-, E29D, P30R, K31E, D32T, R33-, E34-, P37-; p7: I24L, T50I; pro: I36L, N37S; rev: K20R, R35K, H82N; tat: T23N, M39T; vif: V31I, E61D, D117G, K155R; vpr: I70V; vpu: Y30W, H74R, G77W, D78N"}}}, {"name": "CRF85_BC_NODE_0000008", "node_attrs": {"div": 0.14887, "clade_membership": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A541C", "G2413A", "C3013T", "C3032A", "A3124G", "G3264A", "G3398A", "C5149T", "G5359T", "A5556G", "C5621T", "T5663C", "C5792T", "C5831A", "A5865G", "-6175C", "T6190C", "-6205T", "-6206A", "A6209C", "-6223G", "-6224G", "-6225A", "-6226A", "-6229A", "T6261A", "A6287T", "-6999G", "-7000C", "A7026G", "G7677A", "G7702T", "A8489C", "G8516A", "C8992-", "-8993T"], "RT-p51": ["P313T", "R390K", "A435T"], "RT-p66": ["P313T", "R390K", "A435T"], "gp120": ["K4G", "V136E", "N145Y", "G318S", "K319R", "-379D", "-382G", "K391R"], "gp41": ["S125N", "R133S", "L340F"], "p17": ["Q69P", "E120A", "A121D"], "p2": ["-11A"], "p6": ["E12A"], "vif": ["T188I"], "vpr": ["R85I"], "vpu": ["V19A"]}, "labels": {"aa": "RT-p51: P313T, R390K, A435T; RT-p66: P313T, R390K, A435T; gp120: K4G, V136E, N145Y, G318S, K319R, -379D, -382G, K391R; gp41: S125N, R133S, L340F; p17: Q69P, E120A, A121D; p2: -11A; p6: E12A; vif: T188I; vpr: R85I; vpu: V19A"}}, "children": [{"name": "KU992937", "node_attrs": {"div": 0.16528, "accession": "KU992937", "clade_membership": {"value": "CRF85_BC"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14CN_SCYB18"}, "LANL_subtype": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["-280G", "C281-", "A305T", "A347T", "C419T", "C461T", "A470G", "T495C", "T568C", "G647A", "A699-", "-705C", "A715-", "A747C", "A866G", "A932G", "C992T", "A995G", "A1007T", "G1067A", "T1244C", "A1370G", "G1424A", "G1720A", "-1729T", "-1730C", "-1731G", "-1732A", "-1733G", "-1734G", "T1735A", "C1736G", "G1737C", "A1738T", "G1740A", "A1741C", "G1742C", "A1743C", "A1746G", "C1748T", "A1751-", "G1752-", "C1753-", "T1754-", "C1755-", "C1756-", "T1795C", "G1978A", "G2210A", "A2220G", "C2238T", "T2323C", "G2710A", "G2715A", "G3334A", "T3349C", "G3439A", "A3545C", "T3780C", "C3892T", "G4685A", "A4735G", "T4793C", "A4845G", "G4859A", "A4880G", "C5114A", "G5140A", "A5159G", "T5194C", "C5242T", "A5269T", "A5335G", "G5357A", "A5421G", "G5433A", "T5442C", "T5467A", "A5537G", "A5552C", "A5594G", "A5614C", "A5620C", "A5702G", "A5784G", "C5827A", "A5846C", "T5852A", "C5917T", "A5926G", "T6025C", "C6083A", "G6158A", "A6160T", "A6167G", "-6174G", "-6180G", "C6189G", "G6198C", "-6201G", "G6203A", "G6204A", "-6207G", "-6208T", "T6210A", "G6211T", "G6212A", "-6213G", "A6214T", "T6216C", "G6217T", "-6218T", "-6219A", "-6220C", "A6234C", "G6326A", "G6331C", "A6332T", "A6333C", "C6334T", "T6335A", "C6336G", "A6338G", "G6339A", "T6340G", "A6458G", "G6572C", "A6605G", "T6631G", "C6736A", "G6767A", "C6797A", "G6799A", "A6856G", "A6954T", "T6957A", "A6960C", "G6982-", "T6983-", "C6984-", "T6985-", "-7002G", "C7003T", "C7005T", "-7007A", "C7008A", "C7009A", "C7024T", "A7063G", "T7114G", "T7150A", "A7152G", "G7160A", "T7170C", "A7197G", "A7241G", "C7264T", "G7268A", "T7444C", "C7498T", "G7628A", "A7688T", "T7715G", "A7735C", "C7755A", "G7801A", "T7813C", "A7977G", "C8005G", "G8017C", "A8019G", "A8023G", "T8097C", "G8168A", "G8170A", "G8173A", "G8182A", "G8265T", "A8405G", "G8407A", "C8451T", "A8461G", "G8520A", "G8588A", "C8790T", "G8794A", "G8830A", "G8875A"], "INT": ["L2S"], "RT-p51": ["D39N", "E42G", "T48I", "G207E"], "RT-p66": ["D39N", "E42G", "T48I", "G207E", "M484L"], "gp120": ["H77N", "E102N", "N105D", "-107S", "-108N", "-109S", "-110T", "S115H", "-116S", "-117T", "-118Y", "-123K", "-124E", "K127T", "E158K", "K159N", "N160S", "S162E", "N202D", "E240Q", "N251D", "H259Q", "D294E", "V305I", "S308-", "Q315K", "Y367F", "-368Y", "N369T", "-383S", "S384L", "-385K", "N420K", "T436N", "I439T", "K448R", "I463V", "E472K"], "gp41": ["S138A", "R144S", "A151E", "D217G", "E225G", "N239S", "L265S", "V289I", "L321F"], "nef": ["R22K", "H40R", "A60T", "Y81F", "P150S", "R151K", "C163Y", "R178K"], "p17": ["R4S", "S54P", "L78S", "M104I"], "p24": ["I6L"], "p6": ["G14D", "T22L", "I39T"], "rev": ["S8G", "I13L", "K14R", "H53D", "E57Q", "I59V", "C107Y", "A108T", "V109I", "A112T"], "tat": ["Q54R", "H59P"], "vif": ["K50R", "I87V", "I98M", "N176K", "G185E"], "vpr": ["P4T", "T19A", "H77R"], "vpu": ["T3P", "T5L", "K32R", "S62L", "H74N", "A75D", "D80A", "L82Q"]}, "labels": {"aa": "INT: L2S; RT-p51: D39N, E42G, T48I, G207E; RT-p66: D39N, E42G, T48I, G207E, M484L; gp120: H77N, E102N, N105D, -107S, -108N, -109S, -110T, S115H, -116S, -117T, -118Y, -123K, -124E, K127T, E158K, K159N, N160S, S162E, N202D, E240Q, N251D, H259Q, D294E, V305I, S308-, Q315K, Y367F, -368Y, N369T, -383S, S384L, -385K, N420K, T436N, I439T, K448R, I463V, E472K; gp41: S138A, R144S, A151E, D217G, E225G, N239S, L265S, V289I, L321F; nef: R22K, H40R, A60T, Y81F, P150S, R151K, C163Y, R178K; p17: R4S, S54P, L78S, M104I; p24: I6L; p6: G14D, T22L, I39T; rev: S8G, I13L, K14R, H53D, E57Q, I59V, C107Y, A108T, V109I, A112T; tat: Q54R, H59P; vif: K50R, I87V, I98M, N176K, G185E; vpr: P4T, T19A, H77R; vpu: T3P, T5L, K32R, S62L, H74N, A75D, D80A, L82Q"}}}, {"name": "KU992929", "node_attrs": {"div": 0.16662, "accession": "KU992929", "clade_membership": {"value": "CRF85_BC"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14CN_SCYB2"}, "LANL_subtype": {"value": "CRF85_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A206G", "G286A", "A354G", "G463A", "T473C", "A530C", "A650G", "A677C", "A680G", "A690G", "A692G", "-700G", "G702-", "G703-", "A704-", "-714C", "A758G", "G771C", "T782C", "G989A", "G1088A", "T1103C", "A1109G", "A1124G", "A1127G", "G1145A", "T1422C", "A1464C", "C1490T", "C1550T", "G1628A", "G1687A", "C1756T", "T1832A", "A1906G", "A1908G", "A2026G", "T2062G", "A2182G", "T2251G", "C2296T", "T2302C", "C2326T", "C2335T", "G2530A", "A2599G", "C2978T", "G3079A", "G3085A", "G3097T", "C3100T", "T3165G", "A3199G", "C3202T", "G3221A", "A3361G", "A3449C", "A3460G", "A3622C", "T3721A", "T3853C", "C3857T", "T3976C", "C4181A", "A4246G", "A4372G", "A4603G", "A4769C", "A4856G", "A4978G", "C5027T", "A5037G", "A5058G", "A5085C", "A5148T", "A5248C", "A5267G", "T5472A", "A5557C", "T5577C", "C5579T", "A5628C", "C5651T", "A5655C", "C5688A", "A5704T", "A5706G", "G5717A", "A5787G", "C5797T", "C5824-", "A5825-", "T5826-", "G5830C", "C5833G", "C5859T", "A5907G", "C5917A", "C6023T", "A6030G", "T6067C", "-6174C", "A6177G", "-6180A", "C6183G", "A6184T", "A6186G", "G6198T", "-6201A", "C6202T", "-6207C", "-6208C", "G6211A", "G6212-", "A6214-", "A6215-", "T6216-", "G6217-", "G6227C", "G6303A", "A6323G", "G6328A", "A6438T", "G6475A", "T6654C", "A6668G", "A6669G", "A6706C", "A6716G", "C6766T", "-6773A", "-6774C", "-6775T", "-6776A", "-6777G", "-6778T", "A6779G", "A6780C", "T6787G", "C6792T", "T6793G", "G6802T", "C6824T", "A6841C", "A6854G", "A6926G", "T6953-", "A6954-", "C6955-", "-6962G", "-6963G", "-6964T", "-6965A", "-6966C", "-6967T", "-6968T", "-6969C", "-6970A", "-6971G", "-6972G", "-6973T", "-6974A", "-6975C", "-6976A", "-6977T", "-6978A", "-6979C", "-6980A", "-6981T", "-7002T", "-7007C", "C7008T", "C7014G", "G7015A", "A7089C", "T7141C", "A7149T", "G7151A", "A7157G", "T7159A", "T7162G", "A7269G", "A7375G", "G7440A", "G7640A", "T7642G", "C7692T", "G7701A", "C7714G", "G7756A", "A7769G", "G7790A", "A7791G", "C7940T", "G7953A", "G7997A", "G8185A", "T8213C", "T8264A", "G8453A", "A8505G", "T8584A", "T8646C", "C8699T", "G8774A", "C8831T", "T8860C", "A8870T", "A8905C", "G8923T", "C8990T", "A9027G", "C9078T"], "INT": ["H136N"], "RT-p51": ["Q334H", "M357R", "A376T"], "RT-p66": ["Q334H", "M357R", "A376T", "I452L", "Q509H"], "gp120": ["A2V", "K18R", "N21K", "L57F", "E59G", "V106L", "-107K", "-108E", "-109Q", "-110M", "N111-", "V112-", "N113-", "S114-", "S115-", "E125-", "M126-", "R150K", "N157D", "Y195F", "V267A", "N272G", "T288A", "-307T", "K309A", "N311K", "T313M", "K316N", "H324Y", "-328N", "K329-", "K334E", "N358D", "Y367-", "-368F", "-370G", "-371T", "-372S", "-373G", "-374T", "-375Y", "-376M", "-377S", "-383I", "-385L", "T387R", "E412A", "K432I", "G433K", "N435E", "T436E", "E472G"], "gp41": ["I24M", "R46K", "T109A", "D113K", "S129T", "T130I", "S133N", "D137E", "K156E", "D163S", "P213S", "D232N", "F304L", "L321S"], "nef": ["I55V", "Y102H", "M173T", "E176D", "E188A", "R194M"], "p17": ["I7V", "R43K", "Q65H", "K114N", "-122R", "G123-", "-127Q"], "p2": ["M14L"], "p24": ["A14P"], "p6": ["S3N", "P26L"], "pro": ["S12T", "I36M", "N37S", "N88K"], "rev": ["K14S", "I21T", "P31L", "R50K", "G113R"], "tat": ["S31C", "F32L", "S61R", "P68L", "Q81D", "A82T"], "vif": ["Q6R", "E61D", "H131R", "T151A", "K158E", "K167Q", "I188L"], "vpr": ["Y15F", "E48D", "T55A"], "vpu": ["T5I", "L7F", "A15V", "F27L", "I33L", "R37K", "E60D", "L61Q", "S62E", "A63E", "M65L", "E66A", "M67F", "G68M", "-70E", "-71M", "-72G", "P76G", "G77-"]}, "labels": {"aa": "INT: H136N; RT-p51: Q334H, M357R, A376T; RT-p66: Q334H, M357R, A376T, I452L, Q509H; gp120: A2V, K18R, N21K, L57F, E59G, V106L, -107K, -108E, -109Q, -110M, N111-, V112-, N113-, S114-, S115-, E125-, M126-, R150K, N157D, Y195F, V267A, N272G, T288A, -307T, K309A, N311K, T313M, K316N, H324Y, -328N, K329-, K334E, N358D, Y367-, -368F, -370G, -371T, -372S, -373G, -374T, -375Y, -376M, -377S, -383I, -385L, T387R, E412A, K432I, G433K, N435E, T436E, E472G; gp41: I24M, R46K, T109A, D113K, S129T, T130I, S133N, D137E, K156E, D163S, P213S, D232N, F304L, L321S; nef: I55V, Y102H, M173T, E176D, E188A, R194M; p17: I7V, R43K, Q65H, K114N, -122R, G123-, -127Q; p2: M14L; p24: A14P; p6: S3N, P26L; pro: S12T, I36M, N37S, N88K; rev: K14S, I21T, P31L, R50K, G113R; tat: S31C, F32L, S61R, P68L, Q81D, A82T; vif: Q6R, E61D, H131R, T151A, K158E, K167Q, I188L; vpr: Y15F, E48D, T55A; vpu: T5I, L7F, A15V, F27L, I33L, R37K, E60D, L61Q, S62E, A63E, M65L, E66A, M67F, G68M, -70E, -71M, -72G, P76G, G77-"}}}]}]}]}]}]}]}]}]}, {"name": "results/subtype_trees/CRF07_BC.nwk", "node_attrs": {"div": 0.12993, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "A692G", "T698-", "A1001T", "T1253G", "C1610T", "A1619G", "G1622A", "T1646C", "T1652C", "G1664A", "C1682T", "C1714A", "A1715G", "-1729T", "-1730T", "-1731G", "-1732G", "-1733G", "-1734G", "T1735A", "C1736A", "G1740A", "A1741C", "G1742A", "C1748T", "G1752T", "C1756A", "A1766G", "G1769-", "A1771-", "A1774-", "A1776-", "G1777-", "G1778-", "G1779-", "A1780-", "A1781-", "-1787T", "T1832A", "A1840G", "G1841A", "C1849G", "G1852A", "A1853T", "A1858G", "G1861A", "C1867A", "C1873T", "A1903C", "A1906G", "A1918G", "A1942G", "A1972G", "A1981G", "T1987C", "T1996C", "A2003C", "A2005C", "G2008A", "A2530G", "C2653T", "A2677G", "G2714C", "C2720T", "A2725G", "G2842A", "G2869A", "C2908T", "A2911T", "G3385A", "A3543G", "A3816G", "G4774A", "A4911T", "C4943T", "A5179G", "G5225A", "T5237C", "C5251A", "T5275G", "T5281C", "A5305G", "C5333T", "G5355T", "G5370A", "C5398T", "C5547A", "G5781C", "T5826C", "G5862T", "C6067A", "G6073A", "G6088A", "C6183-", "T6193C", "-6195A", "A6273G", "T6328G", "G6442A", "G6577A", "A6668G", "A6669G", "G6734A", "A6854G", "G7160-", "T7403C", "A7735G", "T7748C", "T7876C", "C8213G", "A8273G", "A8276C", "G8292A", "A8393G", "A8396G", "T8584A", "T8585C", "A8594T", "T8597A", "C8603T", "A8717C", "T9098C", "G9132A", "T9181C"], "INT": ["K14R"], "RT-p51": ["E207Q"], "RT-p66": ["E207Q", "Y483C"], "gp120": ["G3V", "D71E", "E125-", "I126-", "K140R", "N202D", "N272G", "T436-", "E472A"], "gp41": ["M54L", "L304V", "I325L"], "nef": ["F81Y", "Q125H", "M168V", "R194K"], "p17": ["G123K"], "p6": ["A12E", "-18G", "-19E", "E21T", "A25S", "P26Q", "K31-", "R33-"], "pro": ["S12T", "V15I", "I19L", "E35D", "I36M", "K69H"], "rev": ["A11E"], "tat": ["M39T"], "vif": ["R63K", "M109L"], "vpr": ["G41S", "Y45H", "V84L", "A89T"], "vpu": ["E58D", "L64F"]}, "labels": {"aa": "INT: K14R; RT-p51: E207Q; RT-p66: E207Q, Y483C; gp120: G3V, D71E, E125-, I126-, K140R, N202D, N272G, T436-, E472A; gp41: M54L, L304V, I325L; nef: F81Y, Q125H, M168V, R194K; p17: G123K; p6: A12E, -18G, -19E, E21T, A25S, P26Q, K31-, R33-; pro: S12T, V15I, I19L, E35D, I36M, K69H; rev: A11E; tat: M39T; vif: R63K, M109L; vpr: G41S, Y45H, V84L, A89T; vpu: E58D, L64F", "clade": "CRF07_BC"}}, "children": [{"name": "CRF07_BC_NODE_0000001", "node_attrs": {"div": 0.13221999999999998, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G1253A", "C2202A", "T4694G", "C5621T", "C5651T", "G6023T", "-6202C", "-6214A", "A6443C", "C6721T", "-6983T", "-6987A", "-7151A", "G7197A", "G7440A", "G7734A", "A7744G", "T8832C", "G8864T", "A8906C", "G8923A", "C9006G"], "RT-p51": ["A36E"], "RT-p66": ["A36E"], "gp120": ["D34E", "V57F", "-108N", "-110T", "I197L", "R448K"], "gp41": ["L325F"], "nef": ["E174D", "Q188H"], "vpu": ["A15V"]}, "labels": {"aa": "RT-p51: A36E; RT-p66: A36E; gp120: D34E, V57F, -108N, -110T, I197L, R448K; gp41: L325F; nef: E174D, Q188H; vpu: A15V"}}, "children": [{"name": "KF234628", "node_attrs": {"div": 0.16324999999999998, "accession": "KF234628", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "TW"}, "date": {"value": 2013.0}, "Strain_name": {"value": "pCRF07"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C30T", "A47G", "C152-", "-281C", "A286G", "T305A", "A386G", "A418G", 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["T5V", "I6V", "F27L", "I33L", "E66G"]}, "labels": {"aa": "INT: I31V, Q42R, A124S, K211N, I234S, K264E, V281M; RT-p51: K49R, E169D, K173R, E203G, Q245E, K311S; RT-p66: K49R, E169D, K173R, E203G, Q245E, K311S, Q480R, C483F, S554N, K558R; gp120: A2V, L6F, E71G, T104S, -109V, -111R, -112N, N113E, -114S, -115V, -116R, -117N, A133T, K141Q, Y145H, N157T, N160K, S161N, Y163S, R164K, L165N, I166S, N167S, S171T, Y195F, T204K, N212H, I243V, K254R, E262K, E307A, -308G, K309N, N311T, T313A, Q315H, R316K, A322T, P326-, N327-, -328N, K332V, -368N, N369D, -374T, -375Y, -376R, -377S, -378N, -379D, -380T, -381G, -382V, V427E, N432P, -433D, N434D, -436G, D446N, A472E; gp41: R46K, S107T, T109A, D137E, D163G, N166K, P209R, T210L, G215E, D232T, N239S, D247E, D262G, A268T, R277S, V304I, R324G, R334T, I336V, F340L; nef: G3A, S9C, I16V, F85L, K104R, R151K, E154G, C163S, R192S, E197Q; p17: H28R, Q112K, -122K, K123E, -124A, -125D, -126G, -127K; p2: S5R, Q6D, -7T, T8N, S10-, -12T; p24: I15L, V91I, G94N, S120A; p6: T21S, S25P, E29D, D32-, E34-, P37-; p7: G8S, P9S, I12V, K20R; pro: D35E, M36I, I62V; rev: D7E, S8N, E10D, Y28A, R50N, S54T, P67S, S86N; tat: T39M, K40Q, Q54K, N67D, L74G, P75S, D80N; vif: K17R, D45E, V51I, V65I, E99A, D117E, V129I, P131H, K157R, I159T, R183H; vpr: S41G, F72Y, R87G; vpu: T5V, I6V, F27L, I33L, E66G"}}}, {"name": "CRF07_BC_NODE_0000002", "node_attrs": {"div": 0.13537999999999997, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T495G", "A500C", "A1142T", "C1628T", "C1652T", "T1796C", "G2833A", "G4476T", "-6209A", "-6210T", "-6212A", "-6228A", "T6261A", "T6331C", "G6653A", "-6967A", "-6971A", "-6985A", "-7156T", "A7313C", "A7771T", "T7813C", "A7995G", "G8273A", "G8499A", "G8917A"], "gp120": ["V136E", "N158E", "V267I"], "gp41": ["I4L", "K156N", "K231R"], "nef": ["A53S"], "p17": ["S54A", "E55D"], "p2": ["-11A"], "p7": ["K41R"], "tat": ["L68P"]}, "labels": {"aa": "gp120: V136E, N158E, V267I; gp41: I4L, K156N, K231R; nef: A53S; p17: S54A, E55D; p2: -11A; p7: K41R; tat: L68P"}}, "children": [{"name": "KF835494", "node_attrs": {"div": 0.16612999999999997, "accession": "KF835494", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN303"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C200G", "T201C", "A214G", "G224A", "A278G", "-280G", "G365C", "A379C", "A388G", "A512G", "C540A", "A548G", "G562A", "A603T", "T614G", "C641T", "A678C", "C679A", "A680G", "C684G", "A685C", "G686A", "G687A", "C688A", "A690G", "A694C", "G695T", "C697-", "G701-", "G702-", "G703-", "A704-", "-709G", "-710C", "-711G", "-712G", "-713G", "-714A", "A730T", "G740A", "A806G", "A839G", "T861G", "A935T", "T1001A", "C1098G", "C1137A", "A1241G", "T1244C", "T1245C", "A1307G", "A1343T", "C1439T", "A1458G", "A1476G", "G1543A", "A1588G", "T1613C", "A1614C", "A1735G", "C1750A", "A1751G", "-1769G", "-1771G", "-1774A", "-1776A", "-1777A", "-1778G", 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"G7309A", "A7373T", "G7477A", "A7519G", "T7636C", "G7640A", "C7658G", "A7668G", "A7688G", "C7692T", "G7712A", "C7714A", "G7717A", "A7733G", "C7755A", "T7765C", "A7773G", "G7790A", "A7818G", "T7830C", "C7876T", "G7885A", "T7888A", "C7926T", "T7929C", "G7936A", "T7959C", "G8017A", "A8018G", "A8032G", "C8065T", "A8086G", "G8130A", "C8131G", "T8182G", "C8189A", "G8213T", "C8293T", "T8366A", "A8402G", "C8406A", "T8426G", "C8445A", "C8500G", "T8504C", "T8505C", "G8506A", "T8507G", "T8543C", "T8595G", "A8617G", "G8660A", "G8666T", "C8717A", "T8756C", "G8762A", "G8795T", "A8815C", "A8870T", "A8882C", "A8917C", "A8954G", "G8955A", "T9130C", "A9131T"], "INT": ["E11D", "R14K", "S119P", "Q136N"], "RT-p51": ["K103R", "Y121H", "V179D", "Y181C", "M184V", "T200A", "R277K", "L283I", "A286T", "Q334E", "N348I", "M357R", "K366R", "S379C", "A437V"], "RT-p66": ["K103R", "Y121H", "V179D", "Y181C", "M184V", "T200A", "R277K", "L283I", "A286T", "Q334E", "N348I", "M357R", "K366R", "S379C", "A437V", "K464E", "V466I", "T477A", "K527R"], "gp120": ["N5S", "K18R", "E19D", "E34V", "F57H", "E59T", "E71K", "-105D", "-106V", "-107R", "-109G", "-111H", "-112N", "N113G", "-114T", "V137L", "D202N", "E240G", "I243M", "E265N", "-308D", "K309Q", "E312K", "Q315H", "S318A", "K332N", "A334T", "I343V", "G365S", "-368F", "-370N", "-371T", "-372D", "-373I", "-374F", "-375N", "-376G", "-377T", "-378G", "-379N", "-380S", "-383S", "-384K", "-385V", "A412E", "K418N", "N420T", "N432K", "-433H", "-436S", "T437N", "K464Q", "A472G"], "gp41": ["V2A", "I24L", "R46K", "I72M", "T109A", "D113N", "Q119E", "K122R", "N129D", "T130I", "D137K", "K144E", "A151E", "N157S", "D163N", "K172R", "M176T", "N195K", "T208I", "L219P", "N239D", "R276Q", "L296I", "V304F", "F325L"], "nef": ["S8R", "I20M", "D28E", "C55Q", "F85V", "K92R", "E108D", "H125Q", "R151S", "E158A", "E176D", "R192T", "D205N"], "p17": ["K15T", "K18R", "Q69K", "R76K", "T90S", "D93E", "T115Q", "Q117A", "A118K", "K119E", "E120A", "A121G", "-122G", "Y132F"], "p24": ["S44A", "P123A", "L136M"], "p6": ["E19G", "P24Q", "-31R", "-33K", "-35L", "-36Y", "K42R", "L50S"], "p7": ["S4G", "R26K", "T50P"], "pro": ["N37D", "K41R", "Q61E", "A71V", "V77I"], "rev": ["S8P", "E30K", "E57R", "T62A", "L73F", "R80G", "Q95E", "S112A", "A114D"], "tat": ["K19R", "F32L", "Q54P", "P73S", "R76Q", "S84P"], "vif": ["R34K", "D45E", "K67I", "L109V", "K158R"], "vpr": ["P4S", "H40L"], "vpu": ["T5I", "L7S", "V21I", "F27L", "R31K", "D44E", "E60D", "L61H", "S62E", "A63E", "F64L", "M65A", "E66L", "G68-", "-70E", "-71M", "-72G", "H74L"]}, "labels": {"aa": "INT: E11D, R14K, S119P, Q136N; RT-p51: K103R, Y121H, V179D, Y181C, M184V, T200A, R277K, L283I, A286T, Q334E, N348I, M357R, K366R, S379C, A437V; RT-p66: K103R, Y121H, V179D, Y181C, M184V, T200A, R277K, L283I, A286T, Q334E, N348I, M357R, K366R, S379C, A437V, K464E, V466I, T477A, K527R; gp120: N5S, K18R, E19D, E34V, F57H, E59T, E71K, -105D, -106V, -107R, -109G, -111H, -112N, N113G, -114T, V137L, D202N, E240G, I243M, E265N, -308D, K309Q, E312K, Q315H, S318A, K332N, A334T, I343V, G365S, -368F, -370N, -371T, -372D, -373I, -374F, -375N, -376G, -377T, -378G, -379N, -380S, -383S, -384K, -385V, A412E, K418N, N420T, N432K, -433H, -436S, T437N, K464Q, A472G; gp41: V2A, I24L, R46K, I72M, T109A, D113N, Q119E, K122R, N129D, T130I, D137K, K144E, A151E, N157S, D163N, K172R, M176T, N195K, T208I, L219P, N239D, R276Q, L296I, V304F, F325L; nef: S8R, I20M, D28E, C55Q, F85V, K92R, E108D, H125Q, R151S, E158A, E176D, R192T, D205N; p17: K15T, K18R, Q69K, R76K, T90S, D93E, T115Q, Q117A, A118K, K119E, E120A, A121G, -122G, Y132F; p24: S44A, P123A, L136M; p6: E19G, P24Q, -31R, -33K, -35L, -36Y, K42R, L50S; p7: S4G, R26K, T50P; pro: N37D, K41R, Q61E, A71V, V77I; rev: S8P, E30K, E57R, T62A, L73F, R80G, Q95E, S112A, A114D; tat: K19R, F32L, Q54P, P73S, R76Q, S84P; vif: R34K, D45E, K67I, L109V, K158R; vpr: P4S, H40L; vpu: T5I, L7S, V21I, F27L, R31K, D44E, E60D, L61H, S62E, A63E, F64L, M65A, E66L, G68-, -70E, -71M, -72G, H74L"}}}, {"name": "CRF07_BC_NODE_0000003", "node_attrs": {"div": 0.14137999999999998, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T424G", "G579A", "C618A", "G692A", "-699A", "-700C", "A1109G", "G1619A", "A1714C", "A1746G", "G2221A", "C2266T", "T2456G", "T2653C", "G2725A", "G2921A", "C3100T", "G4423A", "T4606C", "A4636G", "T4674C", "G4677A", "T4701C", "G4864A", "A4878T", "T5062G", "G5134A", "T5147C", "C5237T", "A5282T", "T5292C", "G5556A", "A5720G", "G5839A", "A5863G", "T6169-", "C6193T", "-6211T", "-6215A", "-6218G", "-6221A", "-6223A", "-6227G", "-6229A", "C6278A", "-6335A", "G6339A", "T6340G", "T6637G", "T6778-", "A6850G", "G6936A", "-6980A", "-6981G", "-6982C", "-6986G", "A7269C", "A7583C", "A7880G", "T8149G", "C8276T", "T8323G", "G8531A", "C8813T", "A8916C", "A9132-"], "RT-p51": ["Y121D"], "RT-p66": ["Y121D"], "gp120": ["-111N", "-125E", "-126M", "Q142K", "N261K", "S318G", "S335P", "G361E"], "gp41": ["T94P", "I193V", "F340L"], "p17": ["M30R", "V82I"], "p6": ["T23A"], "rev": ["R14K", "*101E"], "vif": ["V7A", "K17R", "Y30H", "V31I", "F39L", "R93K", "I98L", "I159R", "R183H"], "vpr": ["Y15H", "H45Y", "I60L", "I63T"], "vpu": ["K38R", "D78N"]}, "labels": {"aa": "RT-p51: Y121D; RT-p66: Y121D; gp120: -111N, -125E, -126M, Q142K, N261K, S318G, S335P, G361E; gp41: T94P, I193V, F340L; p17: M30R, V82I; p6: T23A; rev: R14K, *101E; vif: V7A, K17R, Y30H, V31I, F39L, R93K, I98L, I159R, R183H; vpr: Y15H, H45Y, I60L, I63T; vpu: K38R, D78N"}}, "children": [{"name": "MT635171", "node_attrs": {"div": 0.18311999999999998, "accession": "MT635171", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "VN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "VN_485"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A214G", "G224A", "-280G", "T306A", "A378C", "A379G", "A393C", "A398G", "G401A", "A418G", "G463A", "T486G", "C500T", "C604A", "T614G", "G619A", "C635T", "G687A", "G696A", "-698C", "G740A", "C747A", "C749T", "A920G", "A968G", "A977G", "T1001A", "C1060A", "T1064G", "A1079T", "T1091C", "A1127G", "T1142G", "C1230A", "G1232A", "A1307G", "A1343C", "G1421A", "C1459A", "T1484C", "T1493C", "A1529G", "G1543A", "A1588G", "A1595G", "T1613C", "T1616A", "T1681A", "C1693T", "A1709G", "G1726T", "A1738G", "-1769G", "-1771T", "-1774A", "-1776A", "-1777A", "-1778G", "-1779G", "-1780A", "-1781A", "-1782C", "-1783T", "-1784A", "-1785G", "-1786G", "A1804G", "C1825T", "G1846A", "A1867G", "G1981A", "A2002C", "A2029G", "T2158A", "A2160G", "G2182A", "C2199A", "A2242G", "G2359T", "G2422A", "A2437C", "C2467T", "G2470A", "G2518A", "T2521A", "C2575T", "C2644T", "A2716G", "A2727G", "A2818C", "T2863C", "T2922C", "G2926A", "G2947A", "C3023T", "C3055T", "C3133T", "A3145G", "A3202T", "A3230T", "A3302G", "A3370G", "G3382A", "C3394A", "G3442A", "G3487A", "G3523A", "A3535G", "T3589C", "T3644A", "A3664G", "A3667G", "C3773T", "T3778C", "T3793C", "G3816A", "C3823T", "C3991T", "G4004A", "A4057G", "G4063A", "T4075C", "A4111G", "G4145A", "C4146A", "T4153C", "G4156A", "A4178G", "T4198C", "C4210T", "A4259G", "G4267A", "G4366A", "A4459G", "A4498T", "A4531G", "G4564A", "G4687A", "T4761G", "A4774G", "A4775G", "T4776A", "A4786G", "A4806C", "T4820G", "T4826A", "A4856G", "A5033T", "C5052A", "A5082G", "G5087A", "G5131A", "A5166G", "A5290G", "T5355A", "T5406C", "T5492C", "G5534A", "C5551A", "C5552A", "C5622T", "T5627G", "A5628G", "G5629T", "C5640A", "G5653A", "A5696G", "G5699A", "A5704C", "T5707A", "T5708G", "G5715A", "G5717A", "C5727T", "C5781T", "G5784A", "C5795A", "T5797A", "A5800T", "C5826T", "A5828T", "T5862G", "G5864A", "G5865A", "T5941C", "C5949G", "G5954A", "A5955G", "C5958A", "T6046C", "T6076A", "T6085G", "T6101A", "C6110G", "C6116T", "G6158A", "A6160C", "-6165C", "-6167A", "-6169G", "-6174G", "-6175C", "G6179A", "-6180G", "-6183C", "T6184C", "-6186C", "C6189G", "A6192C", "A6195C", "-6201C", "-6203C", "-6204C", "-6205A", "-6206A", "-6207C", "-6208T", "A6209G", "-6213T", "A6214C", "-6216A", "-6217T", "-6219C", "-6220C", "-6222C", "-6224A", "-6225T", "-6226C", "A6234G", "A6249G", "G6251A", "G6273A", "G6277A", "A6281T", "A6282C", "G6284A", "A6292G", "A6329G", "C6331G", "T6334C", "C6336A", "G6368A", "C6375G", "G6392A", "A6458G", "A6461G", "A6464G", "C6465A", "C6487T", "A6489G", "A6535G", "A6544G", "C6562T", "G6572A", "A6589T", "G6593A", "T6654C", "C6660T", "C6670T", "A6682G", "A6683G", "A6689G", "A6715G", "A6734G", "T6735A", "C6752A", "A6765C", "C6766T", "G6771A", "-6774C", "A6777G", "-6778A", "T6787C", "G6788A", "A6800G", "G6801A", "T6808A", "A6822G", "C6855A", "A6859T", "A6931T", "G6935C", "C6937G", "T6949C", "A6952G", "C6955G", "-6956T", "T6957C", "G6962A", "T6964C", "A6965T", "-6968G", "-6969A", "-6970C", "-6972C", "-6973G", "A6974T", "-6975C", "-6977A", "-6978A", "-6979T", "-6988T", "-6989A", "-6990A", "-6991A", "-6992G", "-6993A", "-6994C", "C7014T", "C7018T", "C7020T", "T7045C", "A7060G", "G7072A", "A7107G", "T7138A", "A7147-", "A7149G", "T7150G", "-7152G", "-7153G", "-7155T", "T7156C", "T7159A", "-7160T", "-7162A", "A7163T", "C7164A", "A7165C", "A7197G", "T7222C", "G7309T", "T7325C", "C7328T", "A7376G", "A7439C", "G7492A", "G7534A", "G7552A", "A7573G", "T7588C", "G7628A", "T7642G", "A7668G", "G7677A", "G7705A", "C7714T", "T7715G", "G7717A", "A7722T", "C7723T", "G7735C", "T7765C", "A7773G", "T7787C", "T7789G", "C7805T", "T7823G", "T7824C", "G7831A", "G7873A", "C7874A", "T7875G", "G7918A", "C7926T", "T7929C", "G7936A", "G7943A", "T7959C", "G7961A", "A7964G", "A8069C", "G8070T", "A8076G", "T8097C", "G8130A", "A8161G", "G8170A", "G8213T", "T8223C", "G8267A", "C8270A", "A8271G", "G8283T", "C8286G", "A8342G", "A8378G", "C8386T", "G8393A", "C8406A", "G8412C", "A8413C", "G8453A", "G8476C", "C8480T", "C8491A", "T8492A", "A8499C", "G8506A", "A8555G", "A8580G", "C8581A", "A8587G", "T8595C", "T8596G", "T8651C", "G8678A", "C8715G", "A8754T", "C8755G", "C8832T", "G8844A", "G8846T", "G8852A", "G8875A", "A8905T", "C8906G", "C8913T", "A8918C", "A8923G", "A8936G", "C8966T", "G8968A", "-8970G", "-8971G", "-8972T", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A", "A8980C", "C9108T", "C9157T", "T9160-", "A9161-", "A9162-", "A9163-", "T9167A", "G9168T", "C9169G", "C9170G", "G9173A", "A9174T", "T9176G"], "INT": ["R14K", "V77I", "A124N", "I135V", "I162V"], "RT-p51": ["K22R", "T35K", "W88C", "K211R", "V276T", "S379C", "T403A"], "RT-p66": ["K22R", "T35K", "W88C", "K211R", "V276T", "S379C", "T403A", "L517I"], "gp120": ["V3G", "G4K", "A32G", "E34S", "T35K", "D74E", "H77Q", "L83I", "Q86E", "E102N", "-105K", "-106V", "-107S", "-109S", "N113-", "K127R", "N132S", "A133T", "R140K", "K143S", "V144M", "N157D", "E158K", "N159E", "S161N", "S162K", "A172T", "T174R", "V180I", "K203E", "T204E", "N212S", "E240K", "R245S", "E247K", "I267T", "T269I", "K277E", "I279V", "D294E", "Q300K", "N304T", "S306N", "E307A", "-308G", "E312K", "R316E", "E323G", "A334E", "E361Q", "-368N", "-370S", "-383S", "-384D", "-385T", "T387I", "P389L", "M406I", "K418R", "K448R"], "gp41": ["F8L", "L9F", "T25A", "R46Q", "D113E", "K122R", "S125N", "S138A", "N140I", "K144N", "N157S", "F162L", "F174A", "M176I", "L191S", "T208I", "G214R", "L219P", "G220R", "R221G", "S256L", "H258R", "L265S", "V304F", "I307T", "V322I", "Q323R", "R327I", "A328G"], "nef": ["A15V", "E24P", "S45T", "A50E", "S53P", "C55Y", "T80D", "K82R", "F85R", "H125D", "T138C", "V168I", "R178K", "H188L", "H191Y", "R192H", "K194R"], "p17": ["K15R", "H28R", "R43K", "L51V", "T90K", "D93E", "R95K", "A118T", "A121T"], "p2": ["A11N"], "p24": ["L6I", "T110N"], "p6": ["L1H", "P5L", "E12A", "R16M", "E20G", "-31I", "-33K", "-35L", "-36G", "K42R", "P49L"], "p7": ["R26K"], "rev": ["D7N", "L13I", "E30K", "R32K", "R38Q", "K39R", "Q74P", "Q95P", "K105E", "A108T"], "tat": ["R53K", "P59N", "P73S", "R76Q", "S84P"], "vif": ["R34K", "L59V", "K63R", "L64I", "K67R", "T74P", "D78E", "H80Q", "P156T", "I166V", "G182D"], "vpr": ["E21G", "L84M"], "vpu": ["T5I", "L7W", "A8S", "A16T", "Y30C", "R31K", "I33L", "L34R", "R37K", "E60D", "L61Q", "S62E", "A63E", "F64L", "M65S", "M67I", "G68L", "-70E", "-71M", "-72G", "H74L"]}, "labels": {"aa": "INT: R14K, V77I, A124N, I135V, I162V; RT-p51: K22R, T35K, W88C, K211R, V276T, S379C, T403A; RT-p66: K22R, T35K, W88C, K211R, V276T, S379C, T403A, L517I; gp120: V3G, G4K, A32G, E34S, T35K, D74E, H77Q, L83I, Q86E, E102N, -105K, -106V, -107S, -109S, N113-, K127R, N132S, A133T, R140K, K143S, V144M, N157D, E158K, N159E, S161N, S162K, A172T, T174R, V180I, K203E, T204E, N212S, E240K, R245S, E247K, I267T, T269I, K277E, I279V, D294E, Q300K, N304T, S306N, E307A, -308G, E312K, R316E, E323G, A334E, E361Q, -368N, -370S, -383S, -384D, -385T, T387I, P389L, M406I, K418R, K448R; gp41: F8L, L9F, T25A, R46Q, D113E, K122R, S125N, S138A, N140I, K144N, N157S, F162L, F174A, M176I, L191S, T208I, G214R, L219P, G220R, R221G, S256L, H258R, L265S, V304F, I307T, V322I, Q323R, R327I, A328G; nef: A15V, E24P, S45T, A50E, S53P, C55Y, T80D, K82R, F85R, H125D, T138C, V168I, R178K, H188L, H191Y, R192H, K194R; p17: K15R, H28R, R43K, L51V, T90K, D93E, R95K, A118T, A121T; p2: A11N; p24: L6I, T110N; p6: L1H, P5L, E12A, R16M, E20G, -31I, -33K, -35L, -36G, K42R, P49L; p7: R26K; rev: D7N, L13I, E30K, R32K, R38Q, K39R, Q74P, Q95P, K105E, A108T; tat: R53K, P59N, P73S, R76Q, S84P; vif: R34K, L59V, K63R, L64I, K67R, T74P, D78E, H80Q, P156T, I166V, G182D; vpr: E21G, L84M; vpu: T5I, L7W, A8S, A16T, Y30C, R31K, I33L, L34R, R37K, E60D, L61Q, S62E, A63E, F64L, M65S, M67I, G68L, -70E, -71M, -72G, H74L"}}}, {"name": "KF835510", "node_attrs": {"div": 0.17206, "accession": "KF835510", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN323"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C200G", "T201C", "T263A", "-281C", "A286G", "A354G", "A360C", "G365C", "A386G", "C419A", "C435T", "G452A", "C558A", "T571A", "A576G", "A585G", "C586T", "G608A", "A609G", "A643G", "C662G", "-698T", "C771G", "A774C", "T782C", "T983C", "G987A", "A1106G", "T1172C", "C1182T", "G1205A", "G1232C", "T1322C", "T1403C", "A1412G", "A1458G", "G1474A", "T1501A", "C1556T", "G1562A", "A1587C", "A1592G", "C1646T", "A1664G", "A1670G", "T1679C", "G1766-", "C1767-", "C1768-", "A1770-", "A1772-", "G1773-", "C1775-", "C1826A", "C1903A", "T1954C", "C1979G", "A1982G", "C1985A", "A1993C", "T2080C", "C2107T", "A2202C", "T2212G", "A2237G", "C2238A", "G2329A", "A2433G", "T2453C", "G2459A", "A2473G", "A2509G", "G2602A", "A2693G", "G2872A", "A2919G", "C2942A", "G2951A", "C2976A", "A2977G", "C3095G", "A3136G", "G3151A", "C3207T", "A3218G", "T3219C", "A3229G", "G3250A", "G3292A", "C3399A", "A3449C", "G3643A", "A3676G", "T3742C", "A3768G", "A3931G", "G3951A", "T3976C", "T4039C", "G4109A", "C4576T", "A4581G", "A4693G", "G4694T", "T4703G", "A4860G", "G4861A", "A4994T", "A5012T", "A5049C", "A5090G", "G5104A", "C5114G", "T5170C", "G5179T", "C5214T", "C5222G", "A5225G", "C5250T", "G5258A", "A5301G", "C5303A", "G5357A", "A5360G", "G5382A", "A5385G", "C5397A", "G5403A", "A5525G", "A5528T", "G5529A", "A5537C", "G5538C", "C5611A", "A5613C", "G5614A", "T5621C", "T5626G", "C5640T", "T5651C", "G5872A", "A5902G", "A5947G", "T5956G", "A6037G", "A6066G", "T6072C", "A6164-", "A6166-", "A6168-", "G6170-", "T6171-", "T6172-", "-6174A", "-6175A", "-6180T", "-6183G", "-6186A", "A6188G", "C6189T", "C6190T", "A6195G", "G6198C", "-6201G", "C6202T", "-6208A", "T6210C", "-6213C", "-6216T", "-6217G", "-6219A", "-6220T", "-6222A", "-6224G", "-6225A", "-6226G", "G6263T", "T6287C", "A6292C", "A6332T", "A6333C", "C6336G", "A6338G", "A6376C", "C6377T", "A6378C", "C6424T", "C6443A", "A6505C", "C6548T", "G6572C", "A6577C", "G6588A", "A6605G", "A6609G", "G6611A", "C6612T", "T6641C", "G6647C", "C6667A", "G6773-", "A6775-", "G6776-", "A6777-", "C6797A", "A6809G", "A6825G", "A6848C", "C6862A", "C6937A", "C6938T", "T6946G", "-6956A", "T6957G", "-6968T", "-6969T", "-6970A", "-6972G", "-6973T", "-6975A", "-6977T", "-6978C", "-6979A", "-6988C", "C7089A", "A7107C", "A7151G", "-7152C", "-7153T", "-7155G", "A7161-", "A7163C", "G7168A", "C7170T", "G7190A", "G7212A", "G7246A", "G7285A", "A7373G", "A7375G", "A7396G", "T7400C", "A7440G", "G7441A", "G7477A", "A7517C", "G7628C", "C7629A", "A7630C", "A7672G", "A7722G", "G7744A", "A7791G", "T7801A", "A7840G", "A7862G", "C7874T", "T7921G", "C7932T", "C7951A", "C8005A", "T8008A", "A8011C", "A8069T", "C8071T", "C8080A", "A8098G", "C8145T", "G8180A", "A8191G", "G8201A", "C8238G", "A8266T", "A8269G", "G8280T", "A8292T", "C8296T", "G8354A", "T8355A", "G8356T", "G8368A", "C8369A", "A8402G", "A8405G", "T8411G", "C8416A", "T8440C", "T8442A", "A8468C", "C8500G", "G8516A", "G8540A", "A8597C", "T8603C", "A8652G", "C8661A", "T8675C", "C8747T", "T8756C", "G8762T", "G8794A", "G8795A", "G8808A", "T8864G", "A8879G", "G8880A", "A8914T", "A9005G", "T9109A", "T9115C"], "INT": ["G59E", "V112I", "K269R"], "RT-p51": ["E36A", "D39E", "T48E", "D113G", "E122K", "T200A", "K275R", "V276I", "L283I", "A286T", "P294Q", "Q334E", "A371V", "I375A", "A435E"], "RT-p66": ["E36A", "D39E", "T48E", "D113G", "E122K", "T200A", "K275R", "V276I", "L283I", "A286T", "P294Q", "Q334E", "A371V", "I375A", "A435E", "I452L", "K558R"], "gp120": ["E71G", "V73A", "T104-", "-107K", "-109V", "T110S", "-112V", "-114S", "-115T", "-116S", "-123K", "-124E", "V137L", "Y145H", "N157E", "N160S", "S162G", "Q175S", "L197I", "D202N", "E240Q", "E241D", "R245K", "N251D", "N252S", "A253I", "S263P", "E265Q", "E307-", "Q315K", "K319E", "H324R", "K332Q", "N364K", "-368S", "-370G", "-371T", "-372L", "-373S", "-374N", "-375S", "-376S", "-377S", "-378D", "A412E", "K418T", "-433A", "N434S", "-436P", "T437-", "T439I", "D446N", "S453N"], "gp41": ["I24V", "I72L", "T109H", "N140S", "D163G", "N166K", "I187V", "L191F", "F206L", "P209L", "T210I", "S256C", "A281V", "G293S", "A300T", "A312G", "L321F", "C326F", "Y330F"], "nef": ["W5M", "S9K", "I20M", "E24G", "P25Q", "V33A", "S34T", "K104E", "Q107K", "R151K", "A156T", "D174E", "V180I", "H191L", "R192Q"], "p17": ["I7V", "H28Q", "L75I", "F79Y", "T81A", "T84V", "I92V", "K103R", "N109K"], "p24": ["P14A", "I15L", "V86I"], "p6": ["E12L", "E29D", "D32-", "E34-", "P37-"], "p7": ["R3K", "I12N", "R41Q"], "pro": ["L10I", "D35E", "Q61E", "I62V", "P63T", "E65D"], "rev": ["R4G", "S5Y", "S8P", "H53N", "S54T", "I55L", "Q74L", "L78I", "S84G", "G111E", "K115E"], "tat": ["N7K", "T39M", "K50R", "K51I", "Q54P", "P75S", "P81Q"], "vif": ["K36S", "R92E", "Q136H", "K155Q", "R173K", "N176K"], "vpr": ["P4A", "E25D", "P37L", "H40D", "S41G", "T49I", "D52N", "Q66R", "L67M", "A93T", "S94G"], "vpu": ["Q2N", "A3T", "L7V", "V15A"]}, "labels": {"aa": "INT: G59E, V112I, K269R; RT-p51: E36A, D39E, T48E, D113G, E122K, T200A, K275R, V276I, L283I, A286T, P294Q, Q334E, A371V, I375A, A435E; RT-p66: E36A, D39E, T48E, D113G, E122K, T200A, K275R, V276I, L283I, A286T, P294Q, Q334E, A371V, I375A, A435E, I452L, K558R; gp120: E71G, V73A, T104-, -107K, -109V, T110S, -112V, -114S, -115T, -116S, -123K, -124E, V137L, Y145H, N157E, N160S, S162G, Q175S, L197I, D202N, E240Q, E241D, R245K, N251D, N252S, A253I, S263P, E265Q, E307-, Q315K, K319E, H324R, K332Q, N364K, -368S, -370G, -371T, -372L, -373S, -374N, -375S, -376S, -377S, -378D, A412E, K418T, -433A, N434S, -436P, T437-, T439I, D446N, S453N; gp41: I24V, I72L, T109H, N140S, D163G, N166K, I187V, L191F, F206L, P209L, T210I, S256C, A281V, G293S, A300T, A312G, L321F, C326F, Y330F; nef: W5M, S9K, I20M, E24G, P25Q, V33A, S34T, K104E, Q107K, R151K, A156T, D174E, V180I, H191L, R192Q; p17: I7V, H28Q, L75I, F79Y, T81A, T84V, I92V, K103R, N109K; p24: P14A, I15L, V86I; p6: E12L, E29D, D32-, E34-, P37-; p7: R3K, I12N, R41Q; pro: L10I, D35E, Q61E, I62V, P63T, E65D; rev: R4G, S5Y, S8P, H53N, S54T, I55L, Q74L, L78I, S84G, G111E, K115E; tat: N7K, T39M, K50R, K51I, Q54P, P75S, P81Q; vif: K36S, R92E, Q136H, K155Q, R173K, N176K; vpr: P4A, E25D, P37L, H40D, S41G, T49I, D52N, Q66R, L67M, A93T, S94G; vpu: Q2N, A3T, L7V, V15A"}}}]}]}]}, {"name": "CRF07_BC_NODE_0000004", "node_attrs": {"div": 0.13147999999999999, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G607A", "C697A", "A1464C", "C1790T", "T1828C", "A2727G", "T3049C", "C3399T", "C5114T", "G6074A", "A6168-", "T6172-", "A6173-", "A6282C", "A6395T", "A6573G", "C6612T", "-6774G", "C6834A", "T7150-", "A7157-", "G7660A", "A7782G", "A8032G", "C8080A", "C8500A", "G8933A"], "RT-p51": ["K211R", "A435V"], "RT-p66": ["K211R", "A435V"], "gp120": ["D74N", "T181S", "E240G", "A253V", "-308E"], "gp41": ["K144R", "P209L", "R324G"], "nef": ["A53D"], "p17": ["G91E", "A121D"], "p2": ["M14L"], "p24": ["V91I"], "p6": ["L50S"], "rev": ["T62A", "L78I"], "vpr": ["P4S"]}, "labels": {"aa": "RT-p51: K211R, A435V; RT-p66: K211R, A435V; gp120: D74N, T181S, E240G, A253V, -308E; gp41: K144R, P209L, R324G; nef: A53D; p17: G91E, A121D; p2: M14L; p24: V91I; p6: L50S; rev: T62A, L78I; vpr: P4S"}}, "children": [{"name": "CRF07_BC_NODE_0000005", "node_attrs": {"div": 0.1329, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A603G", "T3045C", "T6169-", "G6170-", "T6171-", "G6773A", "T6835G", "C6984-", "A7147C", "A7154-"], "RT-p51": ["V317A"], "RT-p66": ["V317A"], "gp120": ["M56I", "E307R", "K319E", "P326Q", "S335P", "G361D", "N434-", "N435-", "T437-", "T439I", "V468I"], "p17": ["T90A"], "p6": ["E34-"]}, "labels": {"aa": "RT-p51: V317A; RT-p66: V317A; gp120: M56I, E307R, K319E, P326Q, S335P, G361D, N434-, N435-, T437-, T439I, V468I; p17: T90A; p6: E34-"}}, "children": [{"name": "CRF07_BC_NODE_0000006", "node_attrs": {"div": 0.13571, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T1501-", "-1769A", "-1771T", "T1999C", "C2968A", "C3274T", "A4684G", "A5410C", "G5556A", "T5860G", "-6180T", "-6186G", "C6278A", "A6605G", "G6821A", "-6956A", "A6974-", "T6976-", "-6990A", "-6992A", "-6994T", "-6996A", "-7009C", "A7027G", "A7626T", "G7628A", "A7744G", "T7747C", "A7818G", "G7831A", "G7918A", "C8276A", "A8754T", "C8755G", "A8887T", "C8907T"], "INT": ["I234S"], "RT-p51": ["D291E"], "RT-p66": ["D291E"], "gp120": ["-116S"], "gp41": ["Q108L", "N160S", "K172R", "M176I", "L325I"], "nef": ["T138C", "K182M"], "rev": ["R14K"], "tat": ["K12Q"], "vif": ["K33R"]}, "labels": {"aa": "INT: I234S; RT-p51: D291E; RT-p66: D291E; gp120: -116S; gp41: Q108L, N160S, K172R, M176I, L325I; nef: T138C, K182M; rev: R14K; tat: K12Q; vif: K33R"}}, "children": [{"name": "KF250385", "node_attrs": {"div": 0.15528999999999998, "accession": "KF250385", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "xj070241"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "T396C", "A412G", "G413A", "A418G", "T424G", "T571A", "T614G", "A666G", "C679T", "A680G", "G693A", "-698T", "-699A", "-700C", "G770A", "C771G", "A839G", "G1002A", "A1073G", "T1103C", "G1184A", "T1409C", "A1433C", "-1452T", "-1453C", "A1458-", "C1459-", "A1500-", "T1502-", "G1562A", "A1578-", "C1628T", "A1738G", "A1746G", "A1751G", "G1773-", "C1775-", "T1787-", "C1788-", "C1789-", "T1790-", "T1791-", "T1792-", "A1793-", "A1804G", "C1826A", "G1858A", "A2012G", "G2027A", "G2221A", "C2596A", "A2612C", "C2635T", "A2726G", "A2842G", "A3127G", "A3136G", "A3340G", "A3361G", "G3382A", "T3399G", "G3484A", "T3496C", "A3675G", "T3730C", "A3739T", "G3808A", "A3919G", "T3946C", "C4138T", "A4159G", "C4234T", "G4264A", "G4294A", "A4384T", "G4423A", "G4561A", "A4581G", "C4608A", "A4661G", "T4679C", "T4694A", "A4739G", "T4827C", "C4890A", "C4898T", "C4988T", "C5019T", "C5027T", "G5131C", "C5182T", "C5242T", "G5267A", "T5292C", "T5333C", "T5355G", "G5357A", "A5370G", "C5438A", "T5492C", "A5544C", "C5551T", "A5576T", "C5621T", "T5636C", "G5653A", "C5663G", "A5689T", "G5717A", "C5781T", "A5787T", "T5788-", "T5789C", "T5791G", "C5792G", "C5795A", "T5797A", "A5800G", "G5802T", "A5804G", "G5805C", "G5808T", "G5809-", "G5810-", "G5811T", "-5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5859T", "A5863G", "G5900A", "T5974G", "G6022A", "A6157G", "T6163-", "A6164-", "A6166-", "A6176-", "A6177-", "-6183A", "T6184C", "C6190T", "A6192G", "C6193T", "A6200-", "G6274A", "T6287C", "G6303A", "G6323A", "A6326G", "T6331C", "T6334C", "-6335T", "A6442G", "G6451A", "G6463A", "A6484G", "A6602G", "G6638A", "A6691C", "A6709G", "T6778G", "A6779G", "A6780G", "G6806A", "A6809G", "C6843A", "A6848G", "A6927C", "G6936A", "T6958G", "G6962-", "G6963-", "T6964-", "A6965-", "C6966-", "-6988T", "-6989C", "-6991A", "-6993C", "-6995C", "-6997A", "-7008C", "G7026A", "G7033A", "-7160G", "-7162C", "T7180G", "G7459A", "G7477A", "G7633A", "G7677A", "A7796T", "A7800G", "C7876T", "A7880G", "G7885A", "T7921G", "C7926T", "A7989C", "C8065T", "A8102G", "G8133A", "C8176T", "C8189T", "A8193G", "G8201A", "T8206C", "G8254A", "T8268C", "G8273A", "T8291G", "A8292G", "A8342G", "G8421A", "A8459C", "C8471T", "T8483C", "A8519G", "G8531A", "A8536G", "A8584T", "T8594G", "T8595G", "A8870G", "A8906C", "A8922T", "C8990T", "T9039C", "C9064-", "C9075T"], "INT": ["K269R", "A278D"], "RT-p51": ["K173Q", "R211G", "V435G"], "RT-p66": ["K173Q", "R211G", "V435G", "K527R"], "gp120": ["A2V", "V16I", "T104V", "-114S", "-115T", "-117N", "-118S", "-119M", "Q142K", "K143T", "Y145H", "R150K", "N158E", "D202N", "T250A", "N251D", "E262K", "K309G", "E323K", "-328K", "T330-", "K332E", "N358T", "-368M", "R391K"], "gp41": ["S125N", "T165S", "N166S", "I193V", "F206L", "T208I", "Q229P", "T267A", "R277N", "K297R", "A300T", "V322A", "G324R", "Y330G"], "nef": ["A27T", "K39N", "E65G", "Y81F", "F85V", "Q188H", "K194W"], "p17": ["K26R", "H28R", "M30R", "F79Y", "D93E", "I111V", "T115M", "E120K"], "p2": ["-7T", "T8N", "N9S"], "p24": ["P14A"], "p6": ["E20G", "T23A", "-31I", "D32-", "P37-", "L38-", "K42R"], "p7": ["K10-", "R11K", "I12R", "K38-"], "pro": ["L10I", "I72V", "V77I"], "rev": ["E10A", "I21F", "L73F", "D85G", "A114V"], "tat": ["A21D", "P59S", "N67I", "L68P", "P73S"], "vif": ["L8M", "L102M", "G182A"], "vpr": ["A55T", "I63T", "L84V", "T89A"], "vpu": ["T5I", "V10A", "A16T", "A19G", "I28L", "R37K", "E60D", "L61-", "G68-", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: K269R, A278D; RT-p51: K173Q, R211G, V435G; RT-p66: K173Q, R211G, V435G, K527R; gp120: A2V, V16I, T104V, -114S, -115T, -117N, -118S, -119M, Q142K, K143T, Y145H, R150K, N158E, D202N, T250A, N251D, E262K, K309G, E323K, -328K, T330-, K332E, N358T, -368M, R391K; gp41: S125N, T165S, N166S, I193V, F206L, T208I, Q229P, T267A, R277N, K297R, A300T, V322A, G324R, Y330G; nef: A27T, K39N, E65G, Y81F, F85V, Q188H, K194W; p17: K26R, H28R, M30R, F79Y, D93E, I111V, T115M, E120K; p2: -7T, T8N, N9S; p24: P14A; p6: E20G, T23A, -31I, D32-, P37-, L38-, K42R; p7: K10-, R11K, I12R, K38-; pro: L10I, I72V, V77I; rev: E10A, I21F, L73F, D85G, A114V; tat: A21D, P59S, N67I, L68P, P73S; vif: L8M, L102M, G182A; vpr: A55T, I63T, L84V, T89A; vpu: T5I, V10A, A16T, A19G, I28L, R37K, E60D, L61-, G68-, -70E, -71M, -72G"}}}, {"name": "KF250377", "node_attrs": {"div": 0.15983999999999998, "accession": "KF250377", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "XJ070248"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "C419T", "A461T", "G480A", "T495G", "A530C", "G555A", "A557T", "C641T", "A661G", "A670G", "C672G", "A682G", "A690-", "A691-", "G692-", "G693-", "A694-", "G695-", "G696-", "A697-", "-700A", "G701A", "-705G", "-706A", "-707C", "-708T", "-709G", "-710C", "-711G", "-712G", "-713G", "-714A", "G740A", "A941G", "A1010G", "A1022G", "A1049G", "A1089G", "G1199A", "A1307G", "A1418G", "T1422C", "-1501G", "G1713A", "A1714T", "A1743G", "T1748C", "C1768T", "A1772G", "-1774A", "-1776A", "-1777A", "G1972A", "C1979A", "G1981C", "T2104C", "G2182A", "T2269C", "C2296T", "T2302A", "G2305A", "T2347C", "A2362G", "T2456G", "A2592G", "G2656A", "C2684A", "C2694T", "A2699G", "C3013T", "C3121T", 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["Q61N"], "rev": ["R4G", "S5N", "P31L", "I55L", "Q74L"], "tat": ["T23N", "K29R", "F32L", "T39I", "K50R"], "vif": ["V31I", "F39V", "H48N", "E99A", "I128L", "K168R"], "vpr": ["Q77H"], "vpu": ["A3T", "T5N", "L7V", "I18L"]}, "labels": {"aa": "INT: I31V; RT-p51: Y121D, K166R, Q197K, T200I, I202V, K366R, T386I, A437V; RT-p66: Y121D, K166R, Q197K, T200I, I202V, K366R, T386I, A437V, V466I, I484M, L517I; gp120: D34K, I56L, E59G, K69N, N74T, T104R, -114V, -115S, -117T, -118Y, G443Q, L466V, A472E, E479G, R480K, E481A; gp41: T25A, T67A, K77G, I84M, K90R, L91R, R144E, A151E, K156N, N157S, D163N, P213S, D232G, S256C, A281V, V304F, E313G, L321V; nef: R35Q, H40R, I43V, D54A, R151G, E155V, S187I, K194R; p17: K18R, E42D, G49S, S54A, Q65H, E74N, N109S, Q112R, Q113E, Q116R, K119-, E120-, D121-; p2: -12T; p24: I91V, S120G; p6: E12M, T22A, P30L, -31M, -33N; p7: I12S; pro: Q61N; rev: R4G, S5N, P31L, I55L, Q74L; tat: T23N, K29R, F32L, T39I, K50R; vif: V31I, F39V, H48N, E99A, I128L, K168R; vpr: Q77H; vpu: A3T, T5N, L7V, I18L"}}}]}, {"name": "CRF07_BC_NODE_0000007", "node_attrs": {"div": 0.13718999999999998, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["-699A", "G911A", "A945G", "A1089G", "T1172C", "A1173T", "A1458G", "A1832C", "T2499C", "A2726G", "T3139C", "G3477A", "G4476T", "C4585T", "T5147C", "T5292C", "C5478T", "A5547C", "G5784A", "G6022A", "A6458G", "G6668A", "G6669A", "A6734G", "T6735A", "T6778G", "A6786C", "G6788A", "A6800G", "A6809G", "A6840G", "G6936A", "T6953-", "A6954-", "C6955-", "-6967A", "-6969A", "-6971A", "-6975A", "G7198A", "G7440A", "T7585C", "C7714A", "G8213A", "G8844A"], "RT-p51": ["I135T", "R211G"], "RT-p66": ["I135T", "R211G", "R461K"], "gp120": ["-110N", "-111N", "N157D", "G272N", "N311T", "E312K", "R316G", "K329-", "Y367-", "N369-"], "gp41": ["R46K", "D137E", "V304I"], "nef": ["V168M"], "p2": ["-11A"], "p24": ["T148S"], "pro": ["T12P"], "rev": ["E11A"], "tat": ["R57S"], "vpr": ["Y15H", "I63T", "Q77H"]}, "labels": {"aa": "RT-p51: I135T, R211G; RT-p66: I135T, R211G, R461K; gp120: -110N, -111N, N157D, G272N, N311T, E312K, R316G, K329-, Y367-, N369-; gp41: R46K, D137E, V304I; nef: V168M; p2: -11A; p24: T148S; pro: T12P; rev: E11A; tat: R57S; vpr: Y15H, I63T, Q77H"}}, "children": [{"name": "KF835511", "node_attrs": {"div": 0.16762, "accession": "KF835511", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN324"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A214G", "A278G", "-280G", "A398G", "C419T", "C469A", "C471A", "G481A", "T495G", "A520G", "A521C", "G555A", "A557C", "G562A", "G608A", "T614G", "C626T", "C669A", "A678-", "C679-", "A680-", "-698T", "-700C", "T746C", "T917C", "A920G", "C946T", "A1007G", "C1098G", "G1205A", "C1230A", "A1242T", "C1243G", "G1253A", "G1311T", "A1445C", "C1464A", "T1493C", "A1495G", "T1501C", "C1628T", "A1714C", "A1725G", "A1738G", "A1740G", "A1746G", "C1768A", "-1769G", 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"RT-p51": ["A36E", "D39E", "Y121H", "T165I", "I202V", "A286T", "I329V", "Q334N", "T359A", "A376T", "S379C", "V435E"], "RT-p66": ["A36E", "D39E", "Y121H", "T165I", "I202V", "A286T", "I329V", "Q334N", "T359A", "A376T", "S379C", "V435E", "C483Y"], "gp120": ["V57A", "E71D", "T104K", "-105D", "-106A", "-107K", "-108V", "-109S", "-112S", "N113I", "-114R", "-125E", "-126I", "K143S", "N159E", "R164Y", "A176S", "G240E", "E241K", "V267N", "K309A", "K312R", "Q315L", "S318G", "-328R", "A334E", "R351G", "G365S", "-367V", "-368F", "I386-", "P389Q", "-433T", "-434S", "-435T", "-436E", "R448K", "D449N"], "gp41": ["Q52H", "T109E", "E110D", "D113E", "Y132F", "R133T", "N160S", "M176I", "V190L", "I193V", "F206L", "T210I", "D232A", "D247E", "L265S", "S299R", "A300T", "A312G", "Y330A"], "nef": ["I16V", "R71K", "F85L", "H125Q", "V133E", "Y135F", "D161N", "C169S", "E176D", "Q188M", "H191R", "K194M", "L198R"], "p17": ["A45E", "L46I", "G49D", "S54A", "K62S", "E74N", "R76K", "D93E", "Q112K", "T115-"], "p2": ["L14M"], "p24": ["T72V", "I91V", "S120G", "P123A", "T171C", "A194S"], "p6": ["E12A", "R16G", "E20G", "T21A", "T23A", "P30Q", "-31R", "-33K", "-34E", "-35L", "-36Y"], "p7": ["K10R", "I12T"], "pro": ["L19V", "Q61E", "A71T"], "rev": ["E10A", "K20R", "I21L", "R50S", "L73F", "R80G"], "tat": ["N7R", "K12N", "F32L", "T39M", "Q60P", "N67T", "P75S"], "vif": ["V31G", "R34K", "D45E", "V51I", "I98V", "K141N", "R181K"], "vpr": ["R36G", "E48D"], "vpu": ["L7C", "A8S", "A15V", "V22I", "D40N", "I43F", "M67R", "H74L"]}, "labels": {"aa": "INT: Q42K, I101V, Q136H, G163E, K215N; RT-p51: A36E, D39E, Y121H, T165I, I202V, A286T, I329V, Q334N, T359A, A376T, S379C, V435E; RT-p66: A36E, D39E, Y121H, T165I, I202V, A286T, I329V, Q334N, T359A, A376T, S379C, V435E, C483Y; gp120: V57A, E71D, T104K, -105D, -106A, -107K, -108V, -109S, -112S, N113I, -114R, -125E, -126I, K143S, N159E, R164Y, A176S, G240E, E241K, V267N, K309A, K312R, Q315L, S318G, -328R, A334E, R351G, G365S, -367V, -368F, I386-, P389Q, -433T, -434S, -435T, -436E, R448K, D449N; gp41: Q52H, T109E, E110D, D113E, Y132F, R133T, N160S, M176I, V190L, I193V, F206L, T210I, D232A, D247E, L265S, S299R, A300T, A312G, Y330A; nef: I16V, R71K, F85L, H125Q, V133E, Y135F, D161N, C169S, E176D, Q188M, H191R, K194M, L198R; p17: A45E, L46I, G49D, S54A, K62S, E74N, R76K, D93E, Q112K, T115-; p2: L14M; p24: T72V, I91V, S120G, P123A, T171C, A194S; p6: E12A, R16G, E20G, T21A, T23A, P30Q, -31R, -33K, -34E, -35L, -36Y; p7: K10R, I12T; pro: L19V, Q61E, A71T; rev: E10A, K20R, I21L, R50S, L73F, R80G; tat: N7R, K12N, F32L, T39M, Q60P, N67T, P75S; vif: V31G, R34K, D45E, V51I, I98V, K141N, R181K; vpr: R36G, E48D; vpu: L7C, A8S, A15V, V22I, D40N, I43F, M67R, H74L"}}}, {"name": "KF250375", "node_attrs": {"div": 0.16101, "accession": "KF250375", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "NX070014"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A354G", "A386G", "C434T", "G547C", "A581C", "C604A", "A607G", "C688A", "A689G", "A691C", "G692T", "G695C", "A697G", "-698G", "G701-", "G702-", "G703-", "A704-", "A803G", "T851C", "C950T", "G1002A", "G1090C", "A1124G", "A1259G", "T1271G", "C1439T", "A1476G", "A1496G", "G1543A", "G1562A", "A1701T", "A1709G", "A1745-", "A1746-", "C1747-", "T1748-", "C1749-", "C1750-", "A1751-", "T1752-", "C1753-", "T1754-", "C1755-", "A1756-", "G1757-", "A1758-", "A1759-", "G1760-", "C1761-", "A1762-", "G1763-", "G1764-", "A1765-", "G1766-", "C1767-", "C1768-", "A1770-", "A1772-", "G1773-", "C1775-", "A1990T", "T1999C", "A2038G", "C2101T", "G2117A", "G2221A", "A2519G", "T2632C", "C2671T", "T2672C", "G2710A", "A2929G", "A3027G", "C3100T", "G3151A", "T3197C", "G3221T", "A3293C", "C3294T", "A3490G", "T3505C", "A3622G", "T3898C", "A3931G", "G4027A", "C4138T", "A4178G", "C4318T", "C4428T", "A4581G", "G4769C", "A4774G", "A4845G", "T4972G", "A5057G", "A5090G", "G5134A", "G5176A", "C5222A", "C5237T", "T5260C", "C5303A", "G5336T", "C5351T", "A5370G", "C5397T", "T5448G", "T5471A", "T5492C", "G5493A", "A5494C", "C5539A", "A5581G", "G5668A", "T5686G", "T5687C", "A5693C", "A5702G", "G5711A", "A5720G", "G5730A", "A5790G", "A5793G", "G5839A", "A5868G", "C5869G", "G5911T", "T5923C", "A5926G", "T5956C", "C5998T", "A6001G", "T6085G", "T6134C", "T6155C", "G6158A", "A6160T", "-6165C", "-6180T", "-6183G", "A6185G", "-6186G", "T6187C", "C6189T", "G6198A", "T6199G", "-6201C", "-6202T", "A6234T", "A6235G", "T6238C", "G6251A", "A6275C", "C6282G", "T6287A", "C6293T", "T6295G", "T6307G", "G6328T", "A6329G", "T6331C", "-6335T", "T6337C", "A6448C", "A6488C", "A6489G", "A6505G", "A6529G", "G6532A", "G6566T", "A6605G", "G6638C", "A6639G", "A6679G", "G6774A", "A6777G", "A6781T", "A6791G", "A6799T", "G6802A", "A6805G", "G6806A", "G6807A", "T6808A", "C6833A", "A6839G", "C6937A", "T6941C", "C6951-", "A6952-", "G6963A", "T6964G", "-6968G", "-6970A", "-6972G", "-6973T", "-6977T", "-6978C", "-6979A", "-6980A", "-6981G", "-6982C", 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"A238S", "N251D", "E262R", "D294E", "R307K", "E308G", "K309N", "T313A", "Q315H", "S318K", "Q326K", "-328G", "D361E", "F363L", "G365-", "T366-", "-376G", "-377I", "-378N", "-379E", "-380T", "-381E", "-382S", "-383S", "-384S", "-385V", "M398L", "E401G"], "gp41": ["A14V", "I24V", "Q32R", "K106R", "D113G", "N166R", "N195K", "P213R", "G220E", "K231N", "D232N", "I235V", "N239S", "A245V", "T267A", "T306A", "E313G", "V322I", "I329V"], "nef": ["E24G", "A50D", "D53A", "R178K", "K184Q", "Q188H", "R192K"], "p17": ["I7V", "G71A", "A90E", "E91G", "A118E", "K119T", "E120D", "D121G", "-122K", "K123-"], "p24": ["T72A", "S120A", "D180E"], "p6": ["T8S", "T23-", "P24-", "S25-", "Q26-", "K27-", "Q28-", "E29-", "P30-", "D32-"], "p7": ["S4G", "R26K"], "rev": ["S8R", "R50Q", "H53S", "D85G", "S106P"], "tat": ["N24K", "F32Y", "K40Q", "L68P", "I69V", "Q78E", "E85K"], "vif": ["K36N", "E61D", "K63R", "I87V", "V129G", "R183H"], "vpr": ["H40N", "H45Y", "L67M", "T89A"], "vpu": ["V21I", "F27A", "E29A", "K32R", "R35K", "K38R", "D78N"]}, "labels": {"aa": "INT: M84I, I135V, T218I, K269R; RT-p51: V8I, I142V, K311R, A376S, T400L; RT-p66: V8I, I142V, K311R, A376S, T400L; gp120: N5R, E19D, H77Q, E102N, -105N, -106V, -107S, -108G, -109I, -112K, N113T, -114M, -115M, K127-, A133T, K141Q, K143R, Y145N, N158K, N160D, N212R, A238S, N251D, E262R, D294E, R307K, E308G, K309N, T313A, Q315H, S318K, Q326K, -328G, D361E, F363L, G365-, T366-, -376G, -377I, -378N, -379E, -380T, -381E, -382S, -383S, -384S, -385V, M398L, E401G; gp41: A14V, I24V, Q32R, K106R, D113G, N166R, N195K, P213R, G220E, K231N, D232N, I235V, N239S, A245V, T267A, T306A, E313G, V322I, I329V; nef: E24G, A50D, D53A, R178K, K184Q, Q188H, R192K; p17: I7V, G71A, A90E, E91G, A118E, K119T, E120D, D121G, -122K, K123-; p24: T72A, S120A, D180E; p6: T8S, T23-, P24-, S25-, Q26-, K27-, Q28-, E29-, P30-, D32-; p7: S4G, R26K; rev: S8R, R50Q, H53S, D85G, S106P; tat: N24K, F32Y, K40Q, L68P, I69V, Q78E, E85K; vif: K36N, E61D, K63R, I87V, V129G, R183H; vpr: H40N, H45Y, L67M, T89A; vpu: V21I, F27A, E29A, K32R, R35K, K38R, D78N"}}}]}]}, {"name": "CRF07_BC_NODE_0000008", "node_attrs": {"div": 0.13319999999999999, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T154A", "G164A", "-281C", "T305A", "A518G", "A690G", "A694C", "G695T", "-698C", "G1002A", "-1769A", "-1771T", "-1774A", "-1776A", "-1777A", "-1778G", "-1779G", "-1780A", "-1781A", "-1782C", "-1783T", "-1784A", "-1785T", "-1786A", "C5579T", "-6201A", "-6202T", "-6206A", "-6208A", "G6638C", "C6833A", "A6836-", "A6837-", "T6838-", "C6857T", "-6972G", "-6977T", "-6978C", "-6981G", "A7269C", "C7629A", "A8746T", "G8923T"], "gp120": ["N157T", "E262Q", "E308D"], "gp41": ["T109E"], "nef": ["Y135F", "K194M"], "p17": ["I61M", "E120A"], "p6": ["-31I", "-33K", "-35L", "-36Y"], "vif": ["K36N"]}, "labels": {"aa": "gp120: N157T, E262Q, E308D; gp41: T109E; nef: Y135F, K194M; p17: I61M, E120A; p6: -31I, -33K, -35L, -36Y; vif: K36N"}}, "children": [{"name": "CRF07_BC_NODE_0000009", "node_attrs": {"div": 0.13671999999999998, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A1017T", "G1101A", "G1713A", "A1714T", "T1752C", "A1794G", "G3091A", "G3816A", "T5006G", "C5397A", "C5621T", "C5781T", "A5790G", "C5859T", "-6203G", "-6205G", "T6325G", "G6328C", "A6329T", "A6330C", "A6333G", "-6335G", "T6337G", "A6338T", "G6339A", "T6612C", "G6774A", "-6830C", "-6831C", "-6832G", "G6854A", "-6967A", "-6968A", "-6973T", "-6975A", "-6979A", "-6980A", "-6985A", "C7170T", "T8215A", "A8905T", "A8933G", "C9098T"], "INT": ["R14K"], "RT-p51": ["D177E"], "RT-p66": ["D177E"], "gp120": ["A2V", "T104K", "T439I"], "nef": ["Q188L"], "p24": ["M96L"], "p6": ["E12M", "S25P", "T39A"], "tat": ["N7K"], "vpu": ["T5I"]}, "labels": {"aa": "INT: R14K; RT-p51: D177E; RT-p66: D177E; gp120: A2V, T104K, T439I; nef: Q188L; p24: M96L; p6: E12M, S25P, T39A; tat: N7K; vpu: T5I"}}, "children": [{"name": "KF250374", "node_attrs": {"div": 0.16459, "accession": "KF250374", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "JS070205"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A389G", "C435A", "C482T", "C525T", "A603G", "C618A", "G692A", "G693A", "C694A", "T695G", "A697C", "C698T", "-699G", "-700A", "G701T", "A704G", "-714A", "A968T", "C1078G", "A1088G", "T1100A", "T1102C", "C1115A", "C1175T", "C1295A", "G1466A", "G1503A", "A1536T", "C1598T", "C1628T", "G1673A", "A1751C", "A1769G", "T1790C", "T1792C", "A1907G", "A1920G", "A1927G", "G1972A", "A2007C", "G2009A", "G2156A", "A2237T", "A2332G", "T2356C", "A2362G", "A2389G", "A2579T", "C2626G", "T2668A", "G2710A", "G2727A", "G2833A", "G2951A", "A2959G", "A3019G", "A3080G", "T3112C", "G3151A", "G3221T", "C3322T", "T3346C", "T3412C", "T3466C", "G3483A", "G3494A", "C3504T", "A3545C", "T3551C", "A3565C", "T3589C", "G3631A", "T3644C", "A3667G", "T3778C", "A3835G", "T3889C", "T3904C", "A3985G", "C4021A", "A4076C", "G4145A", "C4146A", "T4153C", "C4173T", "A4174G", "G4176T", "T4177A", "A4178-", "G4264A", "A4279G", "G4423A", "G4677A", "T4694A", "T4702G", "G4708A", "C4728A", "T4761G", "A4785T", "A4786C", "A4860G", "A4880G", "A4895G", "T4919C", "G4949A", "A5033G", "G5179T", "G5226A", "C5237T", "C5281T", "C5303A", "G5336T", "T5436A", "G5437C", "C5444A", "T5472A", "C5490T", "A5491G", "T5513C", "C5530A", "A5537-", "G5538-", "C5539-", "G5558A", "A5575G", "T5577C", "C5622T", "C5639G", "C5640T", "G5717A", "A5720G", "A5721G", "A5787T", "T5788C", "T5789A", "T5791G", "C5792A", "C5795A", "T5797C", "T5799G", "A5800G", "T5801C", "G5802A", "G5803T", "A5804T", "G5805T", "G5809-", "G5810-", "G5811-", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5872A", "G5912A", "T5944C", "C6010T", "A6016C", "A6019G", "T6154C", "A6160C", "-6165G", "T6169-", "G6170-", "T6171-", "-6180T", "-6183A", "T6184C", "-6186G", "A6191T", "A6197G", "G6198A", "T6199G", "T6202C", "-6204G", "-6207A", "A6230-", "C6252T", "C6278A", "T6287C", "C6336A", "T6436A", "A6443C", "C6499T", "G6668A", "G6669A", "C6717T", "A6718G", "T6778G", "A6849C", "C6855A", "A6856C", "T6892C", "A6905G", "G6947A", "T6949G", "-6956A", "-6969C", "-6970A", "-6971A", "-6982T", "-6983A", "-7007A", "-7008C", "-7009C", "G7033A", "A7040G", "C7096T", "A7111G", "A7147C", "A7149G", "A7154-", "-7160G", "-7162G", "G7256C", "C7269G", "G7440T", "T7597C", "A7630C", "T7636C", "G7640A", "C7651T", "A7660G", "A7668G", "T7703A", "G7734A", "T7747C", "G7759A", "G7782A", "T7801G", "T7813C", "G7850A", "C7874A", "C7876T", "T7921G", "C7926T", "A7995G", "A8011C", "G8032A", "C8047T", "A8080C", "A8098G", "G8170A", "C8189T", "T8203C", "G8208A", "G8213T", "T8223C", "A8271G", "A8272G", "T8323G", "G8327T", "C8328T", "G8330A", "C8331G", "A8400T", "G8407A", "A8423C", "T8501G", "A8503C", "G8537A", "A8576C", "G8579A", "T8582C", "A8584C", "A8587G", "G8590C", "T8595A", "T8596G", "C8717A", "T8745C", "A8798G", "C8809A", "C8813T", "C8828A", "G8844A", "G8846A", "C8853T", "G8864T", "G8888A", "A8922C", "T9097C"], "INT": ["I101L", "A124N", "A133V", "G134V", "I135-"], "RT-p51": ["V21I", "T48S", "S162C", "R211K", "A286T", "I329V", "A376S"], "RT-p66": ["V21I", "T48S", "S162C", "R211K", "A286T", "I329V", "A376S", "R463K", "V467I", "T470I", "I484L"], "gp120": ["A20T", "Q54H", "E102D", "K104R", "-105N", "-106V", "-107N", "-108S", "-109T", "-110Y", "-111N", "-112E", "-114G", "-115K", "N434-", "N435-", "T437-", "V468L", "A472G"], "gp41": ["R46M", "E109D", "D113N", "K122R", "L134M", "R144K", "N166K", "G183S", "L191I", "F206L", "T208I", "K231R", "S302N", "V304L", "I307T", "Q323R", "F340L", "A342L", "A343S"], "nef": ["I20L", "R22Q", "D53E", "D54A", "M79I", "Y81S", "K82R", "G83A", "F85R", "H125Q", "F135L", "A156D", "N162K", "V168I", "H171Y", "E174D", "M194L"], "p17": ["L34I", "T90A", "K119E", "A120K", "D121A", "-122D", "K123G", "-124K"], "p2": ["-12T"], "p24": ["E79D", "A116G", "V124T", "D128E"], "p6": ["L38S"], "p7": ["V13I", "I24L"], "pro": ["N37D", "K41R", "K70T", "A71T"], "rev": ["S5R", "S8-", "A15T", "I21T", "I55L", "A62T", "P67S", "I78L", "S84G", "A108T", "A114V"], "tat": ["A21P", "T23N", "F32L", "T39V", "F46S", "Q54-", "S61N", "N67D", "P73S"], "vif": ["V31I", "N36K", "F39C", "R41K", "H48N", "L59V", "K67S", "R92G", "I98M"], "vpr": ["E25D", "S41N", "H45Y", "L67M", "Q77H"], "vpu": ["A11G", "R37K", "K38R", "E60D", "L61Q", "S62E", "A63E", "F64L", "M65A", "E66F", "G68-", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: I101L, A124N, A133V, G134V, I135-; RT-p51: V21I, T48S, S162C, R211K, A286T, I329V, A376S; RT-p66: V21I, T48S, S162C, R211K, A286T, I329V, A376S, R463K, V467I, T470I, I484L; gp120: A20T, Q54H, E102D, K104R, -105N, -106V, -107N, -108S, -109T, -110Y, -111N, -112E, -114G, -115K, N434-, N435-, T437-, V468L, A472G; gp41: R46M, E109D, D113N, K122R, L134M, R144K, N166K, G183S, L191I, F206L, T208I, K231R, S302N, V304L, I307T, Q323R, F340L, A342L, A343S; nef: I20L, R22Q, D53E, D54A, M79I, Y81S, K82R, G83A, F85R, H125Q, F135L, A156D, N162K, V168I, H171Y, E174D, M194L; p17: L34I, T90A, K119E, A120K, D121A, -122D, K123G, -124K; p2: -12T; p24: E79D, A116G, V124T, D128E; p6: L38S; p7: V13I, I24L; pro: N37D, K41R, K70T, A71T; rev: S5R, S8-, A15T, I21T, I55L, A62T, P67S, I78L, S84G, A108T, A114V; tat: A21P, T23N, F32L, T39V, F46S, Q54-, S61N, N67D, P73S; vif: V31I, N36K, F39C, R41K, H48N, L59V, K67S, R92G, I98M; vpr: E25D, S41N, H45Y, L67M, Q77H; vpu: A11G, R37K, K38R, E60D, L61Q, S62E, A63E, F64L, M65A, E66F, G68-, -70E, -71M, -72G"}}}, {"name": "KC492737", "node_attrs": {"div": 0.15807999999999997, "accession": "KC492737", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2005.0}, "Strain_name": {"value": "pXJDC6291_13"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A46G", "T156-", "T165G", "G167A", "G224A", "A301G", "A386G", "C419T", "C434T", "G463A", "G554A", "T593C", "C626T", "G809A", "T861G", "T885C", "A1089G", "G1090C", "C1118G", "A1127G", "T1172C", "G1301A", "A1442G", "A1458G", "G1472A", "T1511C", "A1580G", "A1835G", "T1868C", "A2002G", "G2027A", "T2077C", "C2107T", "C2202A", "A2380T", "T2434C", "A2437G", "T2456C", "C2467T", "T2499C", "G2518A", "C2626A", "A2629G", "T2638C", "C2708T", "C2831T", "A2986T", "C3055T", "A3115G", "C3133T", "C3252T", "A3280G", "T3399C", "C3415T", "A3478G", "T3517C", "G3553A", "A3592G", "A3616C", "A3676C", "C3688T", "T3757C", "C3865T", "A3866G", "C4428T", "T4444C", "G4476T", "C4585T", "C4721A", "C4757T", "A4782G", "A4786G", "T4827C", "A4877G", "C5027T", "A5085G", "A5200G", "T5206C", "A5461C", "T5492C", "A5525G", "G5529A", "A5537C", "A5594G", "G5599T", "A5613G", "G5614A", "G5647T", "C5679T", "C5727T", "C5826T", "G5845A", "T6085G", "G6158A", "-6165A", "-6167A", "-6168A", "-6172T", "-6173A", "-6174G", "-6175C", "A6177G", "G6179A", "-6180A", "-6183G", "-6186C", "C6189G", "C6190G", "A6191G", "A6192G", "C6193T", "A6201G", "-6204A", "-6207C", "A6208C", "-6209T", "-6210A", "-6211C", "-6212A", "-6213A", "-6214A", "-6215G", "-6216A", "-6217T", "-6218G", "-6219A", "-6220G", "-6221G", "-6222A", "-6223A", "G6260A", "G6263C", "T6271C", "G6273A", "A6281G", "C6282A", "G6303A", "T6315C", "A6316G", "A6346C", "G6391A", "C6418T", "A6442G", "A6458G", "C6465A", "A6488T", "A6489C", "C6545T", "A6578G", "G6593A", "T6598C", "A6605G", "T6631G", "A6639G", "C6667T", "G6694A", "A6780T", "A6781G", "A6799C", "A6800T", "G6806A", "A6810G", "C6826T", "A6840G", "A6850C", "C6862T", "A6884G", "T6904C", "G6935A", "C6937A", "C6955G", "-6956T", "-6969G", "-6970G", "-6971G", "-6982C", "-6983T", "-6986A", "-6987A", "-6988C", "-6989T", "-6990C", "-6991A", "-6992A", "-6993C", "-6994C", "G7055C", "C7089A", "A7097C", "A7107G", "C7124T", "A7148G", "-7150C", "-7151A", "-7152A", "-7153C", "-7155C", "-7156A", "-7157A", "-7160A", "-7162A", "G7181C", "G7182A", "A7186G", "G7234A", "G7459A", "T7622A", "A7646C", "A7688G", "T7870A", "C7932T", "C7950T", "A8102G", "G8114T", "A8184T", "A8191G", "A8196G", "G8212A", "C8293T", "T8332G", "G8335A", "A8360G", "C8406A", "G8436A", "A8474G", "T8495C", "A8500C", "G8562A", "A8584T", "T8595C", "T8603A", "T8651C", "G8739A", "T8740C", "C8747T", "A8793G", "A8906G", "A8914G", "G8924T", "G9026A", "A9041G", "T9074G", "T9115C", "A9132G", "T9180A"], "INT": ["I31V", "T218I"], "RT-p51": ["A36E", "Y121H", "I135T", "I178M", "E297D", "T386I", "V435A"], "RT-p66": ["A36E", "Y121H", "I135T", "I178M", "E297D", "T386I", "V435A", "Q507H", "K527N"], "gp120": ["H77Q", "E102K", "-114V", "-115S", "-116S", "-117N", "-118S", "-119T", "-120E", "-121T", "-122P", "-123K", "-124L", "-125E", "-126M", "V136I", "V137L", "R140K", "K143E", "R150K", "V154A", "T157L", "N159S", "N160S", "S161A", "S162Y", "R164S", "T204K", "N212S", "I242V", "E247K", "N251D", "V253A", "H259Q", "Q262R", "K309M", "Q315H", "R316W", "K319R", "-328R", "K329-", "K332N", "A334T", "T344A", "G361R", "-368F", "-370G", "-371T", "-372R", "-373G", "-374N", "-375S", "-376S", "-377S", "-378N", "-379S", "-380T", "E401Q", "A412E", "I415L", "K418R", "N432D", "-433N", "N434T", "-436K", "G443Q"], "gp41": ["S107T", "M115L", "N129D", "N160S", "T210I", "P216L", "T267A", "V271L", "Q294L", "K298R"], "nef": ["A32T", "D53A", "V74I", "Y81F", "F85L", "V133T", "R151G", "H191R", "M194I"], "p17": ["R43K"], "p2": ["-11A"], "p24": ["S44A", "S120A", "V124I", "I129M"], "pro": ["I13V", "V77I"], "rev": ["R4G", "S5N", "S8R", "D85G", "G89V", "K115E"], "tat": ["K29Q", "K50R", "Q54P", "P75S", "P81S"], "vif": ["D45E", "I66V", "K67R", "N140K", "K167E"], "vpu": ["A3T", "V14L", "D80N"]}, "labels": {"aa": "INT: I31V, T218I; RT-p51: A36E, Y121H, I135T, I178M, E297D, T386I, V435A; RT-p66: A36E, Y121H, I135T, I178M, E297D, T386I, V435A, Q507H, K527N; gp120: H77Q, E102K, -114V, -115S, -116S, -117N, -118S, -119T, -120E, -121T, -122P, -123K, -124L, -125E, -126M, V136I, V137L, R140K, K143E, R150K, V154A, T157L, N159S, N160S, S161A, S162Y, R164S, T204K, N212S, I242V, E247K, N251D, V253A, H259Q, Q262R, K309M, Q315H, R316W, K319R, -328R, K329-, K332N, A334T, T344A, G361R, -368F, -370G, -371T, -372R, -373G, -374N, -375S, -376S, -377S, -378N, -379S, -380T, E401Q, A412E, I415L, K418R, N432D, -433N, N434T, -436K, G443Q; gp41: S107T, M115L, N129D, N160S, T210I, P216L, T267A, V271L, Q294L, K298R; nef: A32T, D53A, V74I, Y81F, F85L, V133T, R151G, H191R, M194I; p17: R43K; p2: -11A; p24: S44A, S120A, V124I, I129M; pro: I13V, V77I; rev: R4G, S5N, S8R, D85G, G89V, K115E; tat: K29Q, K50R, Q54P, P75S, P81S; vif: D45E, I66V, K67R, N140K, K167E; vpu: A3T, V14L, D80N"}}}]}, {"name": "CRF07_BC_NODE_0000010", "node_attrs": {"div": 0.13399, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G6179-", "-6209A", "-6211G", "-6212A", "A6324C", "T6331G", "T6334C", "A8402G", "G8823A"], "INT": ["I234S"], "gp120": ["N159K"], "nef": ["I20M", "D161N"], "p2": ["S10-"]}, "labels": {"aa": "INT: I234S; gp120: N159K; nef: I20M, D161N; p2: S10-"}}, "children": [{"name": "CRF07_BC_NODE_0000011", "node_attrs": {"div": 0.14131, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T495G", "G518A", "C604A", "C771G", "T1003A", "G1005C", "A1070G", "A1446C", "C1448A", "A1735G", "A1804G", "A1982G", "C2101T", "T2353C", "T2845A", "G2951A", "A3043G", "G3766A", "C3779T", "A3835G", "A3973C", "T4135C", "C4180T", "T4441A", "C4706T", "T4761G", "T4857A", "T4943C", "A5085C", "G5188A", "C5237T", "G5382T", "C5444A", "T5492C", "G5493A", "A5547C", "A5787T", "T5788C", "T5789A", "A5790G", "T5791G", "C5792A", "C5795A", "T5799G", "A5800G", "T5801C", "A5804C", "G5805A", "A5806T", "G5808T", "G5809-", "G5810-", "G5811-", "-5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-6167G", "-6168A", "-6172T", "-6173A", "-6174A", "C6193T", "A6195C", "G6198T", "-6204G", "-6205T", "-6210T", "-6213T", "-6214A", "-6215A", "-6217G", "A6326G", "-6335T", "A6443C", "G6668A", "G6669A", "G6806A", "-6830C", "-6831C", "C6955G", "-6956T", "-6967A", "-6969A", "-6971A", "-6975A", "-6979A", "-6980A", "A7027G", "-7155A", "-7156T", "G7782A", "T7813C", "C7926T", "T7929C", "G8032T", "A8102G", "G8273A", "A8275G", "G8280T", "C8286G", "T8287C", "G8396A", "G8412C", "A8503C", "T8595G", "C8717A", "G8739A", "A8914G", "C9006G", "A9132T", "A9135C", "G9137C"], "INT": ["N222K"], "RT-p51": ["D250E", "A286T"], "RT-p66": ["D250E", "A286T"], "gp120": ["-105D", "-108N", "-111N", "K143T", "N158E", "I197L", "D202N", "G272N", "E307G", "-370G", "-371T", "-373S", "-374N"], "gp41": ["T208I", "L209P", "T267A", "G324R", "C326F", "A328G"], "nef": ["E24Q", "D54A", "F85V", "H125Q", "V133I", "H191R"], "p17": ["S54A", "M61I", "T90K"], "p2": ["-7T", "T8Q", "-12T"], "p24": ["P14A", "I91N", "A92P"], "p6": ["E19G", "K42R"], "pro": ["I62V"], "rev": ["E11A", "A62S", "D85G"], "tat": ["E2D", "T23N", "R57S", "P73S"], "vif": ["L59V", "L91M", "K167Q"], "vpr": ["H45Y", "A93S"], "vpu": ["E60D", "L61Q", "S62E", "A63E", "F64L", "M65A", "E66A", "M67F", "G68M", "-70E", "-71M", "-72G"]}, "labels": {"aa": "INT: N222K; RT-p51: D250E, A286T; RT-p66: D250E, A286T; gp120: -105D, -108N, -111N, K143T, N158E, I197L, D202N, G272N, E307G, -370G, -371T, -373S, -374N; gp41: T208I, L209P, T267A, G324R, C326F, A328G; nef: E24Q, D54A, F85V, H125Q, V133I, H191R; p17: S54A, M61I, T90K; p2: -7T, T8Q, -12T; p24: P14A, I91N, A92P; p6: E19G, K42R; pro: I62V; rev: E11A, A62S, D85G; tat: E2D, T23N, R57S, P73S; vif: L59V, L91M, K167Q; vpr: H45Y, A93S; vpu: E60D, L61Q, S62E, A63E, F64L, M65A, E66A, M67F, G68M, -70E, -71M, -72G"}}, "children": [{"name": "EF368372", "node_attrs": {"div": 0.16752999999999998, "accession": "EF368372", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2005.0}, "Strain_name": {"value": "XJDC6431_2"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "G196-", "G197-", "A198-", "C199-", "C200-", "T201-", "G202-", "A215G", "G216A", "A217G", "A302T", "G365C", "G367A", "G491A", "A500T", "C540A", "A607G", "C634T", "A666G", "A730T", "T767C", "C830T", "C1008G", "C1009T", "T1172C", "T1335C", "C1406T", "G1450A", "C1464A", "G1526A", "A1602C", "C1628T", "T1728C", "T1752G", "C1767T", "T1771C", "T1796C", "G1981A", "A2014G", "A2029G", "A2056G", "C2202A", "G2210A", "A2311G", "G2422A", "C2464A", "C2503T", "T2521C", "G2530A", "A2551G", "T2608C", "G2651A", "T2653C", "G2686A", "A2726G", "C2828A", "G2830A", "A2842G", "A2884G", "G3016A", "A3145G", "G3154A", "A3247T", "T3253C", "C3274T", "G3292A", "G3442A", "G3487A", "A3490G", "T3499C", "T3526A", "T3589C", "G3808A", "G3817A", "A3955T", "G4036A", "G4063A", "G4423A", "A4438C", "G4476C", "T4537C", "G4677A", "G4695A", "G4696A", "T4701G", "C4721A", "G4749A", "G4864A", "G4949A", "A5063C", "G5176A", "C5222T", "C5397A", "T5398C", "T5579C", "G5614T", "C5621T", "T5626C", "G5668A", "G5700A", "G5730A", "C5781T", "C5827G", "G5839A", "T5857G", "G5865A", "A5867G", "T5944C", "T5956G", "C5998T", "A6009G", "G6029A", "C6052T", "T6109C", "-6165C", "T6171C", "-6175G", "T6181-", "-6183G", "-6186G", "C6190A", "A6194G", "T6198C", "T6199G", "-6203G", "-6207C", "G6211A", "-6216T", "-6218G", "-6219A", "-6220T", "-6221A", "-6222A", "-6223G", "-6224G", "-6225A", "-6226A", "G6232A", "C6247T", "G6251A", "G6263A", "G6274A", "T6285G", "A6311G", "C6324G", "A6330G", "G6345C", "A6415C", "C6469T", "G6573A", "A6574T", "G6575A", "T6612C", "T6637C", "T6658C", "A6679G", "A6734G", "T6735A", "C6758T", "A6765T", "G6771A", "G6776A", "A6777G", "A6779C", "A6790T", "G6802A", "-6832A", "A6849T", "G6854A", "C6855A", "A6856T", "A6868G", "G6935A", "G6936A", "C6937A", "C6938T", "G6947A", "-6968G", "-6970C", "-6973T", "G6981C", "-6982C", "-6983T", "-6985A", "-6986A", "-6987A", "-6988C", "A7021C", "C7124T", "A7148G", "-7150A", "-7151G", "-7152G", "-7153G", "-7157A", "-7160G", "-7162T", "G7252A", "A7261T", "C7269G", "T7284C", "T7308C", "A7313C", "G7322T", "T7325C", "C7328T", "T7408C", "G7441A", "A7505C", "G7534A", "T7537G", "A7553C", "T7567A", "T7585C", "G7589A", "G7631C", "G7640A", "A7643C", "T7647C", "C7651T", "A7669G", "A7688G", "A7691T", "C7692T", "G7702T", "C7706A", "C7714A", "A7744G", "C7755A", "A7771C", "G7790A", "A7796T", "G7831A", "C7876T", "G7885A", "C7935A", "C7950T", "C8047T", "A8080C", "C8103T", "G8127A", "T8155C", "T8164C", "G8213C", "A8284G", "T8291G", "A8292G", "A8297G", "A8364C", "C8406A", "G8427A", "A8458G", "G8490A", "T8501G", "G8516A", "A8525G", "G8572A", "G8590C", "G8660A", "T8711C", "T8756C", "A8801G", "G8808A", "A8823G", "T8832C", "A8882C", "A8906C", "C9075T", "C9098T", "A9099G"], "INT": ["Q221H", "S234T"], "RT-p51": ["A36E", "D39N", "D123E", "D186N", "R211G", "Q245K"], "RT-p66": ["A36E", "D39N", "D123E", "D186N", "R211G", "Q245K"], "gp120": ["S1R", "G4E", "N5D", "D34E", "N52S", "E59K", "-106A", "-107K", "-109S", "-110T", "-112G", "N113A", "-121G", "-122M", "-123D", "-124K", "-125E", "-126I", "A133T", "V137I", "V144G", "I153V", "T157G", "K159R", "R164T", "G240D", "E241K", "V253A", "D294E", "H302Y", "N304I", "S306N", "D308S", "K309Q", "E312D", "K332I", "A334N", "G361K", "G365S", "-368F", "-372D", "-375S", "-376T", "-377S", "-378N", "N432E", "-433G", "-436D", "A472G", "V477A"], "gp41": ["V2A", "I4L", "V7L", "F8L", "L9F", "D78E", "I84L", "A96T", "E110Q", "D113N", "N114H", "M115T", "N129D", "T130L", "R133S", "L135I", "D137E", "A151E", "K156N", "D163N", "T165S", "M176I", "P211Q", "P216L", "A267V", "G275E", "V304L", "Y330G", "I332V"], "nef": ["S8R", "G29R", "K39R", "A50T", "D53E", "R77K", "G83A", "A156T", "N161D", "Q188H"], "p17": ["G11E", "E55D", "Q69K", "E91G", "A100V", "I111V", "Y132F"], "p2": ["L14M"], "p24": ["P93V"], "p6": ["F17L", "S25A", "P30S", "I31T"], "p7": ["M46L"], "pro": ["I72M"], "rev": ["P67S", "I78L", "S103P", "S106P"], "tat": ["N7K", "L68P", "P81S"], "vif": ["V31I", "G37K", "F39V", "D45E", "V55I", "R93K"], "vpr": ["H40Y"], "vpu": ["A3S", "T5I", "V21I", "H74D", "D78N"]}, "labels": {"aa": "INT: Q221H, S234T; RT-p51: A36E, D39N, D123E, D186N, R211G, Q245K; RT-p66: A36E, D39N, D123E, D186N, R211G, Q245K; gp120: S1R, G4E, N5D, D34E, N52S, E59K, -106A, -107K, -109S, -110T, -112G, N113A, -121G, -122M, -123D, -124K, -125E, -126I, A133T, V137I, V144G, I153V, T157G, K159R, R164T, G240D, E241K, V253A, D294E, H302Y, N304I, S306N, D308S, K309Q, E312D, K332I, A334N, G361K, G365S, -368F, -372D, -375S, -376T, -377S, -378N, N432E, -433G, -436D, A472G, V477A; gp41: V2A, I4L, V7L, F8L, L9F, D78E, I84L, A96T, E110Q, D113N, N114H, M115T, N129D, T130L, R133S, L135I, D137E, A151E, K156N, D163N, T165S, M176I, P211Q, P216L, A267V, G275E, V304L, Y330G, I332V; nef: S8R, G29R, K39R, A50T, D53E, R77K, G83A, A156T, N161D, Q188H; p17: G11E, E55D, Q69K, E91G, A100V, I111V, Y132F; p2: L14M; p24: P93V; p6: F17L, S25A, P30S, I31T; p7: M46L; pro: I72M; rev: P67S, I78L, S103P, S106P; tat: N7K, L68P, P81S; vif: V31I, G37K, F39V, D45E, V55I, R93K; vpr: H40Y; vpu: A3S, T5I, V21I, H74D, D78N"}}}, {"name": "EF368370", "node_attrs": {"div": 0.15914999999999999, "accession": "EF368370", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2005.0}, "Strain_name": {"value": "XJDC6441"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C200T", "G234A", "T303A", "A389G", "G498A", "T539C", "G612A", "A661G", "C662T", "A663G", "A691C", "G692T", "G701-", "G702-", "G703-", "A704-", "-711A", "-712A", "-713G", "-714A", "A779G", "G818A", "T885C", "A914G", "A977G", "A1088G", "C1094T", "A1349G", "A1412G", "T1451C", "A1467G", "C1598T", "C1750T", "T1785C", "A1852G", "G1858A", "A1978C", "C1987T", "C1996T", "A2014C", "C2083T", "A2215G", "A2314G", "T2364C", "T2449C", "A2818T", "A2829T", "C2831T", "C3060T", "G3091A", "A3126T", "G3221T", "A3268G", "T3328A", "A3421G", "G3477A", "G3553A", "G3595A", "A3804C", "G3816A", "T3898C", "A3919G", "A4060G", "A4076C", "T4117C", "A4246G", "C4396T", "A4432C", "C4501T", "T4606C", "G4685A", "A4733G", "A4768G", "A4786G", "T4820A", "A4845G", "T5062G", "T5147C", "T5228C", "A5247G", "T5292C", "C5351T", "G5412T", "T5483C", "A5499G", "A5525G", "A5537C", "G5558A", "G5563A", "A5564C", "A5576C", "G5614A", "A5620G", "G5717A", "C5834A", "G5858A", "G6023T", "A6074G", "C6097T", "A6098G", "-6165G", "-6175T", "-6179A", "-6180C", "A6182G", "-6183T", "-6186A", "C6189A", "C6190T", "A6197G", "-6203A", "A6206-", "A6209C", "-6216G", "-6228A", "-6229A", "G6273A", "G6323A", "G6328A", "A6442G", "G6601A", "G6611A", "T6652G", "G6732A", "A6733C", "T6772C", "A6825G", "-6832G", "T6957C", "-6968A", "-6970A", "-6973C", "C6984-", "-7006C", "-7007A", "-7008T", "-7009C", "G7088A", "C7089A", "-7150T", "-7151C", "-7152C", "-7153A", "-7157G", "A7158G", "-7160A", "A7161C", "-7162A", "A7163G", "C7164A", "A7165G", "C7201T", "G7256A", "G7286A", "G7440A", "G7628A", "T7642A", "G7663A", "G7734A", "G7735C", "T7801C", "G7936A", "A7974G", "A8006G", "T8008G", "G8201A", "G8254A", "T8264C", "G8354T", "A8474G", "G8487A", "G8534A", "T8543C", "A8584T", "T8646C", "T8676A", "C8690T", "A8732G", "T8746A", "C8791A", "A8793G", "G8864T", "A8870C", "C8927T", "A8933G", "G8995A", "A9041G", "C9098G", "A9099-"], "INT": ["E10A", "R14K", "I101L", "K219N"], "RT-p51": ["V90A", "Q245L", "S322L", "E344V", "A376S"], "RT-p66": ["V90A", "Q245L", "S322L", "E344V", "A376S", "R461K"], "gp120": ["A2T", "V57F", "N74D", "S82G", "T104R", "-106V", "-107N", "-109T", "-110V", "-112N", "-114S", "R140K", "V253I", "I266M", "G293D", "D294I", "H324R", "-368M", "-372K", "-383S", "-384S", "-385I", "A412K", "-433P", "N435G", "-436T", "T437E", "V468I", "V478M"], "gp41": ["R46K", "E109K", "D113E", "W120*", "R144N", "E224G", "I235V", "A300T"], "nef": ["K4N", "A49T", "Y81F", "Y102H", "L112M", "F135Y", "P150Q", "R151G", "E174D", "E176D"], "p17": ["E55K", "D93N", "N109S", "K110E", "K119A", "-122K"], "p2": ["N9S"], "p6": ["P24L", "Y36H"], "p7": ["M1V"], "pro": ["E60D"], "rev": ["R4G", "S8R", "A15T", "I21L", "E30K", "H53R", "S54A"], "tat": ["K12N", "V36A", "K50R", "Q54P", "S61N", "E63T", "N67T", "R76Q"], "vif": ["V7A", "E61G", "K67R", "D78E", "I87V", "I159R"], "vpr": ["Y15H", "E48G", "I63T"], "vpu": ["A3T", "T5A", "R37K", "P76H"]}, "labels": {"aa": "INT: E10A, R14K, I101L, K219N; RT-p51: V90A, Q245L, S322L, E344V, A376S; RT-p66: V90A, Q245L, S322L, E344V, A376S, R461K; gp120: A2T, V57F, N74D, S82G, T104R, -106V, -107N, -109T, -110V, -112N, -114S, R140K, V253I, I266M, G293D, D294I, H324R, -368M, -372K, -383S, -384S, -385I, A412K, -433P, N435G, -436T, T437E, V468I, V478M; gp41: R46K, E109K, D113E, W120*, R144N, E224G, I235V, A300T; nef: K4N, A49T, Y81F, Y102H, L112M, F135Y, P150Q, R151G, E174D, E176D; p17: E55K, D93N, N109S, K110E, K119A, -122K; p2: N9S; p6: P24L, Y36H; p7: M1V; pro: E60D; rev: R4G, S8R, A15T, I21L, E30K, H53R, S54A; tat: K12N, V36A, K50R, Q54P, S61N, E63T, N67T, R76Q; vif: V7A, E61G, K67R, D78E, I87V, I159R; vpr: Y15H, E48G, I63T; vpu: A3T, T5A, R37K, P76H"}}}]}, {"name": "CRF07_BC_NODE_0000012", "node_attrs": {"div": 0.13457, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C3405T", "A4684G", "G5784A", "A5793G", "A6185-", "A6458G", "A6488C", "T6958-"], "RT-p51": ["A437V"], "RT-p66": ["A437V"], "gp120": ["T104-", "N212H"], "vif": ["K33R"]}, "labels": {"aa": "RT-p51: A437V; RT-p66: A437V; gp120: T104-, N212H; vif: K33R"}}, "children": [{"name": "CRF07_BC_NODE_0000013", "node_attrs": {"div": 0.13648, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T1999C", "A3866G", "G4145A", "G5717A", "-6204G", "-6213G", "A6734G", "T6735A", "G6788A", "A6800G", "-6836A", "-6837A", "-6838T", "-6967A", "-6968A", "-6969A", "-6970A", "-6971A", "-6973T", "-6975A", "-6979A", "-6980A", "-6982C", "-6983T", "-6985A", "-6986A", "-6988C", "C7089A", "G7831A", "G8201A", "A8360G", "C8406A", "A8409G", "T8923G"], "INT": ["I31V"], "gp120": ["N113-", "N158K", "D294E", "E312K", "-370S", "A412E"], "gp41": ["N160S", "M176I", "A300T"], "nef": ["M194R"], "p2": ["-12T"], "vpu": ["R37K"]}, "labels": {"aa": "INT: I31V; gp120: N113-, N158K, D294E, E312K, -370S, A412E; gp41: N160S, M176I, A300T; nef: M194R; p2: -12T; vpu: R37K"}}, "children": [{"name": "AF286230", "node_attrs": {"div": 0.14576, "accession": "AF286230", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 1998.0}, "Strain_name": {"value": "98CN009"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C200T", "A416G", "C476T", "A508G", "C771G", "A774C", "A839C", "C1060A", "A1361C", "C1491T", "C1767A", "T2104C", "T2365C", "A2400G", "T2499C", "C2635T", "G3044A", "C3294T", "T3349C", "A3535C", "T4477C", "T4761G", "T5292C", "C5397A", "C5404T", "A5547C", "G5556A", "T5568C", "A5602C", "G5614A", "A5652G", "T5686C", "A5720G", "G6023T", "A6160G", "-6165A", "-6167A", "-6168A", "-6172T", "-6173A", "-6174G", "-6175C", "A6177G", "-6179A", "-6180A", "-6183G", "-6185A", "-6186A", "A6191T", "A6192G", "A6197G", "G6198A", "T6199G", "A6201C", "T6202C", "-6203T", "-6205C", "A6206C", "-6207G", "A6208T", "A6209G", "-6210A", "-6214C", "-6215A", "-6216T", "-6217G", "-6218A", "-6219A", "-6220G", "-6221G", "-6222A", "-6223A", "G6273A", "C6320T", "G6323A", "-6335T", "T6395A", "A6462G", "C6465G", "G6573A", "G6774A", "T6794C", "G6806A", "A6809G", "A6833C", "T6835G", "-6956A", "-6958T", "G6963A", "-6987T", "A7149C", "-7150A", "-7151G", "-7152A", "-7153G", "-7155C", "-7156A", "-7157A", "-7160G", "-7162T", "C7403T", "A7629G", "C7714A", "G7729A", "C8047T", "A8102G", "C8386A", "G8407C", "A8408T", "C8410A", "T8411G", "G8412C", "A8447G", "A8474G", "G8487C", "A8522G", "G8532A", "G8540A", "T8595C", "A8653G", "C8835T", "T8855C", "G8888A"], "INT": ["A124T"], "RT-p51": ["K102R", "I135T", "V317I", "T400I"], "RT-p66": ["K102R", "I135T", "V317I", "T400I", "Q480H"], "gp120": ["V57F", "-123K", "-124N", "-125E", "-126M", "R140K", "K143T", "L156F", "S181T", "K203R", "T204R", "G240E", "R316G", "K319E", "P326Q", "-368M", "-383S", "-384S", 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"accession": "KF250371", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "GD070145"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G365A", "G413A", "C419T", "T424G", "G491A", "A576G", "A645G", "A779G", "T788G", "A968G", "A1127G", "C1220T", "G1313A", "A1404G", "A1441G", "A1443G", "C1464A", "G1472A", "T1501C", "G1503A", "A1536C", "A1736G", "C1767T", "A1793G", "T1796C", "C1828T", "C2107T", "T2212G", "A2332G", "G2387T", "A2399C", "A2473G", "T2499G", "C2503T", "A2551G", "G2788A", "C2797T", "A2896G", "C2968T", "A2969G", "C3049T", "C3055T", "A3088G", "G3091A", "C3129A", "A3192G", "A3230T", "A3361G", "C3376T", "G3543A", "T3589C", "A3667G", "C3940T", "A4057G", "C4146A", "C4234A", "A4259G", "A4306G", "C4318T", "T4321C", "A4407G", "A4533G", "A4636G", "G4687A", "C4721T", "T4772C", "A5021T", "A5056G", "A5065G", "G5267A", "A5410C", "T5424C", "G5433A", "T5442C", "T5454C", "A5480C", "G5482C", 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"node_attrs": {"div": 0.13982, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A605G", "G690A", "G692A", "-700C", "A1002G", "G1450A", "A1595G", "C1652T", "C1749T", "T1790C", "A2200G", "C2968A", "T3045C", "T5292C", "C5397A", "A5537C", "G6022A", "-6179G", "T6196C", "-6218G", "-6219C", "-6221A", "-6222A", "-6223G", "-6227G", "-6228A", "C6252T", "T6285A", "G6323A", "A6329G", "G6774A", "T6860G", "-6965A", "-6978A", "-6985C", "-6988A", "-6989A", "-6990A", "A7660G", "T7813C", "A8019G", "T8651C", "A8933G"], "RT-p51": ["D291E", "V317A"], "RT-p66": ["D291E", "V317A"], "gp120": ["M56I", "-115N", "A133V", "V144E", "D294E", "S336A"], "gp41": ["N239S"], "p6": ["P24S"], "tat": ["N7K", "T39M", "Q54P"], "vpr": ["I63T"]}, "labels": {"aa": "RT-p51: D291E, V317A; RT-p66: D291E, V317A; gp120: M56I, -115N, A133V, V144E, D294E, S336A; gp41: N239S; p6: P24S; tat: N7K, T39M, Q54P; vpr: I63T"}}, "children": [{"name": "JX392379", "node_attrs": {"div": 0.15656, "accession": 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["I4L", "R46K", "Q108R", "D113E", "R133K", "D137E", "N160S", "K172R", "M176I", "D232N", "R276S", "F340C", "A342I", "A343I"], "nef": ["M20I", "R22Q", "A26V", "E38G", "F85L", "L100I", "V133T", "V146E", "Q188H", "M194W"], "p1": ["H9R"], "p17": ["Y79F", "A90E", "I104V", "A120E", "D121A"], "p2": ["-7T", "T8N", "-10A"], "p24": ["P14A", "L83V", "I91V"], "p6": ["E29D", "E34D"], "p7": ["P9S", "K10R", "R11K"], "pro": ["A71T"], "rev": ["S8P", "I21T", "R50K", "P67S", "T94K"], "tat": ["F32L", "S70P"], "vif": ["R90K", "R93G", "R173K", "I180T", "G185E"], "vpr": ["T19A", "S41G", "H45Y", "T63A", "L84W"], "vpu": ["T5I", "E60D", "L61Q", "S62E", "A63E", "F64L", "M65L", "E66A", "M67F", "G68M", "-70E", "-71M", "-72G", "W77G"]}, "labels": {"aa": "INT: A124T, A128T, E138D, D253E, K269R; RT-p51: S162C; RT-p66: S162C; gp120: A2V, E102K, -104G, -105N, -106V, -107N, N108V, -109T, -110R, -111N, -112E, N113T, -114C, K143T, K159S, S161E, N181T, T191A, I197L, D202N, T208K, H212Y, I243V, D297N, D308A, K309E, R316K, P326Q, S335A, -368R, -369N, -370G, -371T, -372Y, -373M, -374P, -375N, -376G, -377T, -378T, -379N, -380N, -383S, -384S, -385Y, N432K, -436N, T439I; gp41: I4L, R46K, Q108R, D113E, R133K, D137E, N160S, K172R, M176I, D232N, R276S, F340C, A342I, A343I; nef: M20I, R22Q, A26V, E38G, F85L, L100I, V133T, V146E, Q188H, M194W; p1: H9R; p17: Y79F, A90E, I104V, A120E, D121A; p2: -7T, T8N, -10A; p24: P14A, L83V, I91V; p6: E29D, E34D; p7: P9S, K10R, R11K; pro: A71T; rev: S8P, I21T, R50K, P67S, T94K; tat: F32L, S70P; vif: R90K, R93G, R173K, I180T, G185E; vpr: T19A, S41G, H45Y, T63A, L84W; vpu: T5I, E60D, L61Q, S62E, A63E, F64L, M65L, E66A, M67F, G68M, -70E, -71M, -72G, W77G"}}}, {"name": "JX392383", "node_attrs": {"div": 0.16308, "accession": "JX392383", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2006.0}, "Strain_name": {"value": "Xinjiang_2006_709"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["-216A", "A217G", "T258C", "A261G", "A269-", "A286G", "T495G", "A499T", "A521T", "T567C", "T568C", "T614G", "T667G", "-699G", "G702-", "G703-", "A704-", "-714A", "A730T", "T885C", "C890T", "T1003C", "A1089G", "A1106G", "A1133T", "C1182T", "G1205A", "A1361C", "G1388A", "-1452G", "-1453C", "-1454C", "-1455A", "-1456G", "-1457T", "G1543A", "T1575C", "A1588G", "A1592G", "G1640A", "T1748C", "A1772G", "A1777G", "T1796C", "C2107T", "G2134A", "T2278C", "C2281G", "A2437C", "T2456C", "T2494C", "A2617G", "A2665C", "A2715G", "A2743G", "G2833A", "A2884G", "G2947A", "A2969G", "A2985C", "G3070A", "G3091A", "C3133T", "A3136G", "G3151A", "C3178T", "A3280G", "C3399A", "G3487A", "T3552C", "G3595A", "C3610T", "A3675G", "A3768G", "T3799C", "A3813C", "T3889C", "A3916G", "A3961G", "A4060G", "G4176A", "A4183C", "C4210T", "C4471T", "T4502C", "C4543T", "G4561A", "A4636G", "G4677A", "G4685A", "A4697T", "G4708A", "T4761A", "T4820A", "A4865C", "A4878T", "T4907C", "T4943C", "C5052A", "A5059G", "A5122G", "A5143G", "A5240T", "G5257A", "G5275A", "T5314C", "A5335G", "G5566A", "A5574G", "T5626G", "G5653A", "A5790G", "G5793A", "C5827A", "G5865A", "A5907G", "T5974C", "A5985G", "A6030G", "C6052T", "A6066C", "A6073G", "A6074G", "G6136A", "A6158G", "-6165A", "A6166T", "-6167G", "-6168T", "G6170A", "T6171C", "-6172C", "-6173T", "-6174A", "-6175C", "-6180G", "T6181A", "-6183A", "-6185G", "-6186A", "A6191T", "T6199A", "-6203G", "-6204C", "-6205T", "-6207C", "A6208C", "A6209T", "-6210A", "G6211C", "-6213A", "-6214C", "-6215G", "-6216A", "-6217G", "-6220G", "-6224G", "-6225A", "-6226C", "-6229A", "G6267C", "G6273A", "C6278A", "-6335T", "A6346G", "C6396A", "T6493C", "T6511C", "T6541C", "G6566T", "G6593A", "T6676C", "A6718G", "A6734G", "T6735A", "T6760C", "G6771A", "A6773G", "G6776A", "A6777G", "T6778C", "C6797G", "G6801T", "T6808A", "-6830C", "-6831C", "-6832G", "G6935A", "G6936A", "C6937G", "A6952-", "T6953-", "A6954-", "C6955-", "A6956-", "T6957-", "T6961-", "T6964-", "-6966G", "-6967C", "-6968A", "-6969G", "-6970G", "-6971C", 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"K527R", "K558R"], "gp120": ["G4E", "K18R", "H44R", "E59G", "E71A", "N74D", "-104T", "-105Y", "-106N", "-107G", "-109D", "-110T", "-111Y", "-114R", "-116A", "-117T", "-118Y", "-119N", "-120E", "-121A", "-122Y", "-123K", "-124D", "R138T", "R140K", "Q142K", "N158K", "K159E", "A238S", "E247K", "S306N", "K307E", "D308S", "Q315E", "R316M", "G361K", "Y367-", "R391K", "A412K", "N432P", "T433N", "N434S", "N435T", "-436E", "T437S"], "gp41": ["V7L", "Q108K", "N129D", "R144Q", "N166R", "I186T", "F206L", "T208I", "L209P", "N251S", "V271L", "A310T", "L321V", "Y330H"], "nef": ["M1T", "G3N", "M20L", "T23I", "G29R", "A53R", "R71K", "Y81F", "F135Y", "N161D", "V168I", "E174D", "R178G", "H191R", "L198Q"], "p17": ["S54A", "E55V", "K62N", "L78P", "D93E", "I111S", "A120-", "D121-", "K123G", "-124A", "-125D", "-126A", "-127K", "Y132F"], "p2": ["-10N", "-11A", "-12I"], "p24": ["I91A", "S120G"], "p6": ["I31M", "K33R"], "p7": ["R26K", "W37R", "K41R"], "rev": ["S8R", "K20R", "S84G", "G89A"], "tat": ["D64N", "P73S"], "vif": ["K17R", "V31I", "R41K", "L59I", "D78E", "R93S", "I98L", "P156T", "K158R", "K179R", "N186S"], "vpr": ["I46F", "Q77R"], "vpu": ["L7V", "A16T", "H74N"]}, "labels": {"aa": "INT: E13A, G134D, Q136H, W243R; RT-p51: Y121H, Q207R, I292V, E297A, A435E; RT-p66: Y121H, Q207R, I292V, E297A, A435E, L486S, K527R, K558R; gp120: G4E, K18R, H44R, E59G, E71A, N74D, -104T, -105Y, -106N, -107G, -109D, -110T, -111Y, -114R, -116A, -117T, -118Y, -119N, -120E, -121A, -122Y, -123K, -124D, R138T, R140K, Q142K, N158K, K159E, A238S, E247K, S306N, K307E, D308S, Q315E, R316M, G361K, Y367-, R391K, A412K, N432P, T433N, N434S, N435T, -436E, T437S; gp41: V7L, Q108K, N129D, R144Q, N166R, I186T, F206L, T208I, L209P, N251S, V271L, A310T, L321V, Y330H; nef: M1T, G3N, M20L, T23I, G29R, A53R, R71K, Y81F, F135Y, N161D, V168I, E174D, R178G, H191R, L198Q; p17: S54A, E55V, K62N, L78P, D93E, I111S, A120-, D121-, K123G, -124A, -125D, -126A, -127K, Y132F; p2: -10N, -11A, -12I; p24: I91A, S120G; p6: I31M, K33R; p7: R26K, W37R, K41R; rev: S8R, K20R, S84G, G89A; tat: D64N, P73S; vif: K17R, V31I, R41K, L59I, D78E, R93S, I98L, P156T, K158R, K179R, N186S; vpr: I46F, Q77R; vpu: L7V, A16T, H74N"}}}]}, {"name": "CRF07_BC_NODE_0000017", "node_attrs": {"div": 0.14020000000000002, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T1796C", "A2029G", "C2202A", "A3103G", "G3543A", "G4779A", "T4840C", "G5403A", "A5547C", "T5731C", "C6110G", "T6181-", "C6193T", "-6205G", "G6267A", "A6442G", "C6488A", "A6785C", "A6791G", "-6958G", "-6959C", "-6960C", "-6962A", "-6963A", "-6985T", "-6988T", "-6989G", "-6993C", "-6994A", "-7003T", "-7004T", "-7005C", "-7006A", "-7007A", "-7008C", "C7170T", "G7790A", "A7796T", "G7936A", "G7997A", "T8008A", "C8047T", "A8793G", "C9006G"], "RT-p51": ["A36E"], "RT-p66": ["A36E", "C483Y"], "gp120": ["Q86E", "V136E", "N311H", "T313A", "-368M", "-369P", "-371G", "-377S", "-378N", "-380T", "T439I"], "gp41": ["D163N", "T165S"], "nef": ["R151G"], "p17": ["Q65H"], "p2": ["-10S", "-11A"], "rev": ["E11A", "E30K", "S54T", "P67S"], "tat": ["R57S", "R76Q"], "vif": ["V65I", "V85A"]}, "labels": {"aa": "RT-p51: A36E; RT-p66: A36E, C483Y; gp120: Q86E, V136E, N311H, T313A, -368M, -369P, -371G, -377S, -378N, -380T, T439I; gp41: D163N, T165S; nef: R151G; p17: Q65H; p2: -10S, -11A; rev: E11A, E30K, S54T, P67S; tat: R57S, R76Q; vif: V65I, V85A"}}, "children": [{"name": "JX392378", "node_attrs": {"div": 0.16273, "accession": "JX392378", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2006.0}, "Strain_name": {"value": "Sichuan_2006_SC006"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A203T", "G208-", "A209-", "A210-", "A211-", "G212-", "T213-", "A214-", "A215-", "A305G", "C434T", "T495G", "G518A", "A530C", "C540A", "A665G", "C747A", "A1002G", "A1073G", "T1403C", "G1543A", "G1562A", "T1679C", "A1714C", "T1748C", "C1828T", "G1942A", "A2260C", "T2521C", "A2593G", "G2656A", "T2803G", "C2976A", "G3091A", "A3136G", "A3230G", "A3280G", "A3592G", "G3684A", "A3931G", "G4013A", "A4030G", "C4042T", "T4153C", "A4178G", "C4234T", "T4276A", "T4412C", "G4423A", "T4676C", "G4677A", "A4682C", "T4694G", "G4708A", "C4728A", "G4855A", "A4863G", "G4864A", "A4878G", "A5146G", "T5147C", "G5267A", "T5355G", "C5397T", "T5424C", "A5432G", "A5453T", "G5463A", "T5467A", "A5555C", "A5576C", "T5579C", "A5612C", "G5614A", "G5653A", "C5654T", "A5659T", "G5717A", "G5779T", "A5790G", "T5862C", "G5864A", "G5865A", "A5867G", "A5879G", "T5890C", "T5899A", "A5907G", "T5923C", "A5926C", "A5938T", "A5940C", "A5945G", "A5950T", "G5972A", "A5983G", "C5989T", "T5990C", "A5999G", "A6003C", "A6008G", "A6013G", "A6020C", "G6022A", "G6028-", "G6029-", "A6030-", "A6033T", "T6056A", "A6067T", "G6070T", "A6073G", "T6081A", "G6099T", "A6103C", "T6109G", "G6121C", "T6127G", "A6159C", "T6163-", "A6164-", "A6166-", "T6169-", "G6170-", "T6171-", "A6176-", "A6177-", "-6179G", "-6180G", "-6181A", "-6183A", 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"A8292G", "T8321G", "A8337T", "C8480T", "C8500A", "T8505C", "G8506A", "T8507G", "A8584T", "A8597C", "T8651C", "T8746A", "T8756C", "G8808A", "C8809A", "G8888A", "T8903C", "A8906G", "C8913T", "A8918C", "T8923A", "A8933G", "C8964T", "-8970A", "-8971G", "-8972T", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A", "C9108T", "G9138A", "A9140C"], "INT": ["A80T", "I135V", "D167E"], "RT-p51": ["P294Q", "S379G"], "RT-p66": ["P294Q", "S379G", "R530K"], "gp120": ["V3A", "G4K", "N5D", "T9A", "K18R", "L24F", "D29A", "K31E", "V40I", "C46R", "T49A", "D50A", "N52D", "M56L", "E59I", "N60-", "W68R", "E71D", "M72I", "M76K", "S82I", "L83F", "D85E", "K89N", "C91W", "E102T", "-104G", "-105N", "-106A", "-107T", "-109T", "-110S", "-111N", "-112K", "N113T", "-114S", "-115S", "-116Q", "R138N", "Q142K", "I153L", "T157A", "K159S", "N160S", "S161K", "S162N", "N181T", "T204M", "H212K", "G240E", "I243N", "V253A", "G272D", "D294A", "K307R", "D308G", "T345M", "G365S", "-372T", "-373T", "-374V", "-375T", "-376Q", "-379S", "R391K", "-436T", "V468I"], "gp41": ["R46K", "L54M", "T94P", "E109G", "Q119E", "N129-", "T130-", "D137E", "N157D", "N160S", "K172R", "I173M", "F206L", "K231R", "D232N", "L244I", "A245F", "R277S", "G278L", "V304I", "Y330C", "F340V", "Q345L"], "nef": ["A53D", "C55Q", "Y81F", "F135Y", "A156N", "H191Y", "R192S", "M194K"], "p17": ["S54A", "M61I", "Q69K"], "p24": ["L6I", "I91V"], "p6": ["E12A", "S50L"], "p7": ["R26K"], "rev": ["I21L", "R50K", "A62D", "C63F", "P72S", "R80G", "G96P", "V97L"], "tat": ["K19R", "Y26F", "C31S", "T39M", "Q60P", "N67T", "L68P"], "vif": ["V31I", "N36K", "R41K", "H48N", "R90K", "R93E", "I98V", "K141N", "H187R"], "vpr": ["Y15H", "A55T", "L84V"], "vpu": ["Q2P", "A3T", "A16I", "I18L", "R37K", "D58Y"]}, "labels": {"aa": "INT: A80T, I135V, D167E; RT-p51: P294Q, S379G; RT-p66: P294Q, S379G, R530K; gp120: V3A, G4K, N5D, T9A, K18R, L24F, D29A, K31E, V40I, C46R, T49A, D50A, N52D, M56L, E59I, N60-, W68R, E71D, M72I, M76K, S82I, L83F, D85E, K89N, C91W, E102T, -104G, -105N, -106A, -107T, -109T, -110S, -111N, -112K, N113T, -114S, -115S, -116Q, R138N, Q142K, I153L, T157A, K159S, N160S, S161K, S162N, N181T, T204M, H212K, G240E, I243N, V253A, G272D, D294A, K307R, D308G, T345M, G365S, -372T, -373T, -374V, -375T, -376Q, -379S, R391K, -436T, V468I; gp41: R46K, L54M, T94P, E109G, Q119E, N129-, T130-, D137E, N157D, N160S, K172R, I173M, F206L, K231R, D232N, L244I, A245F, R277S, G278L, V304I, Y330C, F340V, Q345L; nef: A53D, C55Q, Y81F, F135Y, A156N, H191Y, R192S, M194K; p17: S54A, M61I, Q69K; p24: L6I, I91V; p6: E12A, S50L; p7: R26K; rev: I21L, R50K, A62D, C63F, P72S, R80G, G96P, V97L; tat: K19R, Y26F, C31S, T39M, Q60P, N67T, L68P; vif: V31I, N36K, R41K, H48N, R90K, R93E, I98V, K141N, H187R; vpr: Y15H, A55T, L84V; vpu: Q2P, A3T, A16I, I18L, R37K, D58Y"}}}, {"name": "KF835532", "node_attrs": {"div": 0.16458, "accession": "KF835532", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN349"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["-207C", "-216G", "A242G", "A359G", "C419G", "T424G", "C435T", "G491A", "A516C", "A530T", "A581T", "T593C", "A607G", "C684A", "G690A", "G692A", "C694A", "T695G", "A697C", "C698T", "-699A", "-700C", "T782C", "A839G", "T858C", "C893T", "A956G", "G1253A", "A1268G", "A1464C", "G1466A", "T1481C", "A1500G", "T1501C", "G1503A", "T1511C", "C1517T", "A1536C", "C1652T", "G1715A", "A1735G", "A1743G", "T1752G", "C1768A", "T1790C", "A1804G", "A1841G", "C2005T", "A2113C", "T2365C", "G2387T", "A2407G", "G2422A", "T2456C", "T2499G", "T2597C", "C2671T", "A2674G", "A2726G", "G2727C", "A2734G", "C2749T", "T2863C", "G2951A", "C3049T", "G3070A", "A3088G", "G3094A", "C3095A", "G3097T", "T3139C", "G3151A", "C3274T", "C3307T", "A3361G", "G3487A", "T3505G", "A3545T", "G3694A", "A3727G", "G3766A", "C3857T", "C4079T", "A4108G", "A4293G", "A4498G", "A4581G", "T4652C", "G4684A", "C4724T", "A4735G", "A4774G", "A4782G", "T4820G", "C4833A", "T4858G", "G4864C", "C4937A", "T5006C", "C5027T", "G5099A", "T5114C", "C5203T", "C5237T", "G5246A", "A5248C", "T5319A", "G5336A", "C5444A", "C5445T", "C5469T", "T5471A", "T5492C", "A5602T", "T5626G", "C5651T", "C5781T", "A5784G", "T5798A", "G5805A", "C5859T", "G5872A", "T5929C", "A6075C", "C6097T", "G6107A", "A6113G", "A6164G", "-6165G", "-6167A", "-6168A", "-6172T", "-6173A", "-6174G", "-6175C", "A6176G", "A6177G", "A6182-", "T6184-", "T6187-", "A6188-", "C6189-", "C6190-", "A6194G", "A6195G", "G6198C", "A6201G", "-6203G", "-6204C", "A6206G", "-6207A", "-6210T", "G6211A", "-6213T", "-6214G", "A6230-", "T6231-", "G6232-", "T6261G", "G6263T", "A6270G", "T6285C", "G6303A", "G6323A", "A6326G", "-6335T", "G6345C", "A6359G", "C6396A", "A6449C", "C6465A", "G6520A", "A6547C", "A6578G", "T6590G", "A6596G", "T6631A", "A6655C", "A6718C", "A6773G", "G6776A", "A6780T", "G6788A", "C6797A", "A6809G", "A6822-", "A6823-", "C6824-", "A6825-", "C6826-", "T6827-", "T6828-", "C6829-", "A6833-", "A6834-", "T6835-", "A6839-", "A6840-", "A6841-", "A6842-", "C6843-", "A6844-", "A6845-", "T6846-", "A6847-", "A6848-", "A6849-", "C6850-", "T6851-", "T6852-", "T6853-", "A6854-", "C6855-", "A6856-", "T6857-", "C6858-", "A6859-", "T6860-", "G6935A", "G6948C", "-6971G", "-6972G", "-6973T", "-6974A", "-6975C", "-6976A", "-6977T", "-6978A", "-6979C", "-6980A", "G6981T", "-6982G", "-6983T", "-6987A", "-6990G", "-6995G", "-6998G", "-7000A", "-7001G", "-7002G", "C7018T", "G7033A", "A7040G", "G7065A", "G7107T", "A7147T", "A7151T", "-7152G", "A7154T", "T7156C", "G7199A", "T7213C", "G7232A", "C7269A", "C7625A", "G7628C", "A7630C", "A7688G", "C7690T", "A7691G", "C7692A", "A7771C", "G7782A", "G7831A", "A7840G", "G7846A", "G7885A", "T7929C", "C7932T", "C7950T", "A7998C", "A8029C", "G8032T", "A8098G", "A8198G", "G8201A", "G8208A", "G8213T", "G8285-", "C8286-", "T8287-", "A8288-", "T8289-", "C8290-", "T8291-", "A8292-", "C8293-", "A8294-", "A8295-", "C8296-", "A8297-", "T8298-", "A8299-", "C8300-", "C8301-", "T8302-", "A8303-", "G8304-", "A8305-", "C8315T", "G8318A", "C8328T", "A8363G", "A8465G", "T8507C", "G8531A", "G8554A", "G8588A", "A8591G", "T8595C", "G8739A", "G8814C", "A8816G", "A8823G", "A8906C", "A8914G", "T9029-", "-9033G", "T9097C", "C9098T", "T9109A"], "INT": ["K173R", "K269R"], "RT-p51": ["E6D", "A98S", "Y121H", "I135R", "R211A", "A286T", "Q334N"], "RT-p66": ["E6D", "A98S", "Y121H", "I135R", "R211A", "A286T", "Q334N", "I484L"], "gp120": ["A2V", "N74T", "D85N", "S87G", "E102K", "N108-", "N113-", "-124G", "E125N", "M126V", "E136G", "V137L", "R138K", "D139G", "V144A", "R150K", "N158E", "R164T", "N169D", "K199Q", "T204K", "H212N", "I242V", "S246A", "N248D", "H259Q", "K307G", "D308N", "K309I", "E312K", "Q315K", "K319E", "E323A", "H324-", "F325-", "P326-", "N327-", "K329-", "T330-", "I331-", "N332-", "F333-", "T334-", "S335-", "S336-", "G361S", "G365A", "-370N", "-374T", "-375Y", "-376M", "-379G", "-381E", "-382G", "-383G", "-384S", "-385T", "I396V", "R404Q", "R418I", "T437L", "D449N", "V460M", "A472E"], "gp41": ["Q108K", "E109H", "N129D", "T130E", "K156N", "M176I", "L209P", "T210I", "P216L", "D232T", "L242F", "S299G", "A300T", "S302N", "V304F", "A328-", "I329-", "Y330-", "N331-", "I332-", "P333-", "R334-", "Q338*", "G339S", "A342V"], "nef": ["R71K", "F85L", "V133I", "E158Q", "N161D", "Q188H", "H191R"], "p17": ["H28Q", "M30R", "M61L", "E91G", "Q117K", "A120E", "D121A"], "p2": ["M14L"], "p6": ["E19G", "T22A", "S25A", "P30Q", "K42R"], "p7": ["I12A", "V13I", "I24L"], "pro": ["I15V"], "rev": ["R50N", "S61R", "A62S", "S84G", "E117G"], "tat": ["T23N", "F32Y", "P75S", "P81S"], "vif": ["R33K", "K50R", "K63R", "I66V", "D78E", "H83N", "L91W", "R93T", "D117E"], "vpr": ["S4P", "H45Y", "E48N", "F72Y"], "vpu": ["L7V", "A15V", "F64Y"]}, "labels": {"aa": "INT: K173R, K269R; RT-p51: E6D, A98S, Y121H, I135R, R211A, A286T, Q334N; RT-p66: E6D, A98S, Y121H, I135R, R211A, A286T, Q334N, I484L; gp120: A2V, N74T, D85N, S87G, E102K, N108-, N113-, -124G, E125N, M126V, E136G, V137L, R138K, D139G, V144A, R150K, N158E, R164T, N169D, K199Q, T204K, H212N, I242V, S246A, N248D, H259Q, K307G, D308N, K309I, E312K, Q315K, K319E, E323A, H324-, F325-, P326-, N327-, K329-, T330-, I331-, N332-, F333-, T334-, S335-, S336-, G361S, G365A, -370N, -374T, -375Y, -376M, -379G, -381E, -382G, -383G, -384S, -385T, I396V, R404Q, R418I, T437L, D449N, V460M, A472E; gp41: Q108K, E109H, N129D, T130E, K156N, M176I, L209P, T210I, P216L, D232T, L242F, S299G, A300T, S302N, V304F, A328-, I329-, Y330-, N331-, I332-, P333-, R334-, Q338*, G339S, A342V; nef: R71K, F85L, V133I, E158Q, N161D, Q188H, H191R; p17: H28Q, M30R, M61L, E91G, Q117K, A120E, D121A; p2: M14L; p6: E19G, T22A, S25A, P30Q, K42R; p7: I12A, V13I, I24L; pro: I15V; rev: R50N, S61R, A62S, S84G, E117G; tat: T23N, F32Y, P75S, P81S; vif: R33K, K50R, K63R, I66V, D78E, H83N, L91W, R93T, D117E; vpr: S4P, H45Y, E48N, F72Y; vpu: L7V, A15V, F64Y"}}}]}]}, {"name": "CRF07_BC_NODE_0000018", "node_attrs": {"div": 0.13691, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A286G", "A607G", "A1088G", "T5579C", "-6173A", "G6981-", "A7158-", "T7159-", "A7161-", "G7628A", "A7629C", "T7921G", "A8080C", "G8273A", "A8597T"], "gp120": ["R140K", "Q262E", "-383S", "N435-"], "gp41": ["E109T", "F206L", "G324R"], "p17": ["E91G"], "rev": ["I78L"], "tat": ["L68P"]}, "labels": {"aa": "gp120: R140K, Q262E, -383S, N435-; gp41: E109T, F206L, G324R; p17: E91G; rev: I78L; tat: L68P"}}, "children": [{"name": "CRF07_BC_NODE_0000019", "node_attrs": {"div": 0.13919, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G518A", "C694A", "-699A", "-700C", "T1999C", "T4761G", "A5159G", "A5499G", "T5568C", "G5858A", "G6251A", "A6442G", "A7163-", "C7164-", "C7714A", "G7831A", "G8267A", "C8276T", "T8278G", "A8297G", "A8604G", "A8636T", "G8864T", "C9098T"], "gp120": ["A2T", "T437-"], "gp41": ["D137E", "N160S", "M176I", "V322I", "I332V"], "nef": ["S88G", "E98D", "E174D"], "p17": ["M61I"], "rev": ["I18T"], "vif": ["L59V"], "vpr": ["T19A"], "vpu": ["D58E"]}, "labels": {"aa": "gp120: A2T, T437-; gp41: D137E, N160S, M176I, V322I, I332V; nef: S88G, E98D, E174D; p17: M61I; rev: I18T; vif: L59V; vpr: T19A; vpu: D58E"}}, "children": [{"name": "KF250373", "node_attrs": {"div": 0.16061, "accession": "KF250373", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "HB070037"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T473C", "A509G", "C525A", "A603G", "C604T", "A660-", "A661-", "C662-", "A663-", "A664-", "A665-", "A666-", "T667-", "T668-", "C669-", "A670-", "G671-", "C672-", "A673-", "A674-", "G690A", "A697C", "C698T", "T731C", "T788A", "C1220T", "C1235T", "G1253A", "T1271G", "A1293T", "A1443G", "G1458A", "A1464C", "T1752G", "A1769G", "A1781T", "C1828A", "C1903T", "A2002G", "A2023G", "G2027A", "T2087C", "G2221A", "G2248A", "T2353C", "A2397G", "A2404G", "A2407G", "G2422A", "A2473G", "T2506C", "A2563C", "C2952T", "A2959G", "C3067T", "A3079G", "G3094A", "G3097T", "T3132A", "A3136G", "T3181G", "T3436C", "G3439A", "A3451G", "T3505A", "G3595A", "A3745G", "G3772A", "G3808A", "A3815C", "T3970C", "C4042T", "C4123T", "A4130G", "C4140T", "C4396T", "A4430G", "C4501T", "G4684A", "G4708A", "C4724T", "A4768G", "A4787G", "T4827C", "G4864A", "A4865C", "A5085C", "A5148T", "G5257A", "G5330A", "T5355C", "T5356A", "G5403A", "A5432G", "T5439G", "G5463A", "T5472A", "C5490T", "A5533C", "A5544C", "A5555C", "C5578T", "T5625C", "T5739C", "C5781G", "C5827A", "G5839A", "C5884T", "G6023T", "T6085G", "A6158G", "A6164-", "A6166-", "T6169-", "G6170-", "T6171-", "-6174A", "-6175A", "-6179G", "-6180T", "T6181A", "-6183C", "-6185G", "-6186G", "A6191C", "T6196G", "T6202C", "-6203A", "-6204G", "-6205G", "-6207A", "A6209-", "G6211-", "A6212-", "A6230-", "C6324A", "A6329G", "-6335G", "A6448C", "C6488T", "A6489C", "C6499T", "G6573A", "T6631G", "T6645C", "G6668A", "G6669A", "A6706G", "C6752G", "A6754C", "A6773-", "G6774-", "A6775-", "G6776-", "A6777-", "T6778-", "A6785C", "A6796G", "C6829T", "T6835G", "-6836A", "-6837A", "-6838T", "A6900C", "A6905G", "G6935A", "C6937A", "-6958T", "-6959A", "-6960A", "-6962G", "-6963G", "-6965A", "-6966C", "-6967A", "-6968A", "-6969A", "-6970T", "-6971A", "-6972G", "-6973T", "-6974A", "-6975C", "-6976A", "-6977G", "-6978A", "-6979T", "C6984-", "A6997-", "G7033A", "C7078T", "C7089A", "A7090G", "A7095C", "C7096A", "C7101A", "A7147C", "-7150A", "-7151T", "-7152G", "-7153A", "-7155A", "-7156C", "-7157A", "A7165-", "G7168A", "G7197A", "G7256A", "G7477T", "G7640A", "A7668G", "A7689C", "A7700C", "G7701A", "C7706A", "T7708A", "T7747G", "T7852C", "C7926T", "G7947A", "C7951A", "G7970A", "G7997A", "C8005G", "G8017C", "G8032A", "C8038G", "C8077T", "G8114C", "G8144A", "G8173A", "A8196G", "G8201A", "A8258C", "G8304C", "G8317A", "G8350C", "A8360G", "G8421A", "T8444A", "A8474G", "A8573G", "T8676C", "C8789T", "A8793G", "G8794A", "G8796A", "G8814A", "A8823G", "A8870T", "T8883C", "A8887T", "C8930T", "G8994-", "A9095G", "T9109G"], "INT": ["S119G", "T122I", "K219E"], "RT-p51": ["K101R", "A286V", "Q334H", "F346Y"], "RT-p66": ["K101R", "A286V", "Q334H", "F346Y", "I452M"], "gp120": ["V57F", "H77Q", "-107K", "-109V", "-110T", "-111G", "-112T", "N113H", "-114K", "-115S", "-116N", "-117R", "-118K", "R448K", "V468I"], "gp41": ["D113N", "K122R", "N129T", "R133Q", "L135I", "D148E", "T208I", "G215E", "E223K", "D232N", "V271L", "A281T", "K298R", "A300T", "I319L", "R334T"], "nef": ["G3A", "A27T", "R151E", "E152K", "E158K", "N161D", "E176D", "K182M"], "p17": ["L64I", "T90V", "N109-", "K110-", "I111-", "Q112-", "Q113-", "A120D", "D121A"], "p2": ["-7A", "T8N", "N9S", "-12T", "M14L"], "p24": ["D180E", "T188S"], "p6": ["S25A", "E34D", "S50*"], "pro": ["V77I"], "rev": ["E6D", "E10A", "R41Q", "R50K", "H53D", "E57Q", "A62T", "L64V", "P77S", "G89A", "S99N", "V109I"], "tat": ["K19R", "F32L", "T39M", "Q60P", "P68S", "P73S", "D80N", "P81Q"], "vif": ["R33K", "R41K", "E61G", "R93N", "K167Q", "T188S"], "vpr": ["Y15F", "L84Q"], "vpu": ["H74N", "D78N"]}, "labels": {"aa": "INT: S119G, T122I, K219E; RT-p51: K101R, A286V, Q334H, F346Y; RT-p66: K101R, A286V, Q334H, F346Y, I452M; gp120: V57F, H77Q, -107K, -109V, -110T, -111G, -112T, N113H, -114K, -115S, -116N, -117R, -118K, R448K, V468I; gp41: D113N, K122R, N129T, R133Q, L135I, D148E, T208I, G215E, E223K, D232N, V271L, A281T, K298R, A300T, I319L, R334T; nef: G3A, A27T, R151E, E152K, E158K, N161D, E176D, K182M; p17: L64I, T90V, N109-, K110-, I111-, Q112-, Q113-, A120D, D121A; p2: -7A, T8N, N9S, -12T, M14L; p24: D180E, T188S; p6: S25A, E34D, S50*; pro: V77I; rev: E6D, E10A, R41Q, R50K, H53D, E57Q, A62T, L64V, P77S, G89A, S99N, V109I; tat: K19R, F32L, T39M, Q60P, P68S, P73S, D80N, P81Q; vif: R33K, R41K, E61G, R93N, K167Q, T188S; vpr: Y15F, L84Q; vpu: H74N, D78N"}}}, {"name": "JQ423923", "node_attrs": {"div": 0.16063, "accession": "JQ423923", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "CNGZD"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C200T", "A356T", "A412G", "C426T", "A488G", "G491A", "G554A", "A676C", "G690-", "G692A", "T695A", "T746C", "C747A", "A866G", "A989G", "A1089G", "A1349G", "G1450-", "T1451-", "-1456C", "-1457T", "C1491T", "A1495G", "G1498A", "A1525G", "G1543A", "A1659T", "A1660C", "T1754C", "A1780G", "C1782T", "T1785C", "A1804G", "G1840A", "T2011C", "T2013C", "T2095C", "G2392A", "A2557G", "T2597C", "T2631A", "T2632A", "A2726G", "A2767G", "C2831T", "A2881G", "T2905C", "G3004A", "C3023T", "C3133T", "T3165G", "A3170G", "A3217G", "G3221A", "C3399T", "G3631A", "G3694A", "A3703G", "G3766A", "G3791A", "G3816A", "C3826T", "G3925A", "T4129G", "T4135C", "G4145A", "T4240C", "G4423A", "T4694G", "C4721A", "T4840C", "G4859A", "G5131A", "A5233G", "A5282T", "C5306T", "C5321T", "C5334A", "A5335G", "A5345G", "T5354C", "G5382A", "C5444A", "T5483C", "T5487C", "T5492C", "A5537G", "A5547C", "C5552A", "A5576C", "T5584C", "A5607G", "G5653A", "G5717A", "C5781A", "G5793A", "A5796C", "C5826T", "T5857C", "A6009G", "G6022A", "T6025C", "-6165G", "-6167A", "-6168A", "-6172T", "-6174G", "-6175C", "A6177G", "-6179A", "-6180A", "-6183G", "T6184A", "-6185A", "-6186A", "A6188G", "C6189A", "C6190T", "A6192G", "A6195G", "G6198A", "A6201-", "T6202-", "-6207T", "-6210T", "-6213T", "-6214A", "-6215C", "-6216C", "-6217G", "-6218G", "-6219C", "-6220T", "-6221A", "-6222G", "-6223A", "-6224G", "-6225A", "-6226G", "-6227G", "-6228A", "-6229A", "C6252T", "T6261A", "G6263C", "G6273A", "A6275T", "G6277T", "G6323A", "A6326G", "-6335T", "A6349G", "T6355G", "T6361G", "A6371G", "T6395A", "T6412C", "C6548T", "G6566T", "T6627C", "C6638G", "C6667A", "G6774T", "G6776A", "A6777C", "G6788A", "C6797G", "A6800G", "G6806A", "G6807A", "T6808G", "-6830C", "-6831C", "-6832G", "A6848G", "A6854G", "T6857C", "T6863G", "C6895T", "T6898C", "A6950T", "A6952C", "T6961-", "T6964-", "-6982G", "-6983T", "-6985T", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "-6991T", "-6992A", "-6993C", "-6994A", "-6995G", "-6996A", "-6998A", "-6999A", "-7000T", "-7001A", "-7002A", "-7003T", "-7004G", "-7005C", "-7006A", "-7007A", "-7008C", "-7009C", "A7010T", "C7020A", "T7105C", "A7107G", "A7108C", "C7136T", "T7138G", "A7154-", "A7165C", "A7167G", "T7180G", "A7296G", "A7312G", "C7344T", "A7375G", "G7441A", "T7622A", "G7705A", "A7722G", "A7818G", "G7846A", "C7917T", "G7936A", "A7942G", "G7944A", "A7971G", "T8007G", "T8008G", "A8029T", "T8182C", "G8188A", "G8213T", "G8261A", "A8292G", "A8342-", "T8371A", "G8373A", "G8377A", "G8385A", "A8409G", "A8413G", "C8415-", "C8416-", "A8417-", "C8473G", "A8474T", "A8584T", "T8597C", "C8669T", "T8746A", "T8756C", "C8831T", "A8874G", "G8917A", "A8967G", "-8970G", "-8971A", "-8972C", "-8973T", "-8974G", "-8975C", "-8976T", "-8977A", "-8978G", "-8979A", "A9027G", "T9068C", "A9101G", "T9180C", "C9181T"], "INT": ["D6N", "R14K", "M50I", "A124T"], "RT-p51": ["V179E", "R211G", "M357R", "T359A", "A376T", "A435V"], "RT-p66": ["V179E", "R211G", "M357R", "T359A", "A376T", "A435V"], "gp120": ["N52S", "M56I", "E102K", "-104R", "-105D", "-106S", "-107S", "-115P", "-116E", "A133I", "V136E", "V137L", "K141Y", "N158E", "N167K", "N169K", "I173V", "S181T", "A238S", "V258A", "K307I", "D308T", "E312K", "Q315E", "R316G", "S318K", "N332E", "T334A", "S335P", "S337A", "G365-", "T366-", "Y367-", "-382G", "-384Y", "-385T", "I386F", "P389Q", "K418S", "R428W", "-433G", "N434T", "E438-", "T439-", "E481G"], "gp41": ["A14V", "I24M", "S107T", "N140S", "K172R", "S205L", "G214E", "E223G", "I235R", "L242F", "V304F", "E320K", "Y330C"], "nef": ["I10K", "V11I", "G12E", "A15T", "T23A", "E24G", "P25-", "T44S", "Y81F", "F135Y", "R178G", "R192K"], "p1": ["K10S"], "p17": ["K26R", "K114T", "K119-"], "p2": ["-10T", "-11A"], "p24": ["L6I", "S120G"], "p6": ["E34G", "Y36H", "K42R"], "p7": ["P9S", "K10R", "R11K", "K20R", "R26K"], "pro": ["I72T"], "rev": ["S8G", "E11A", "L13I", "I21L", "E30K", "R32G", "H53Q", "S54A", "S61C", "S112P", "A114T"], "tat": ["T23N", "V36A", "Q54R", "R57S", "P59H", "N67T", "S70P", "R76Q", "Q78R", "G79R"], "vif": ["N36K", "D45E", "V85A", "G182D"], "vpr": ["I60L", "Q77R", "A93T"], "vpu": ["A16T", "R37K"]}, "labels": {"aa": "INT: D6N, R14K, M50I, A124T; RT-p51: V179E, R211G, M357R, T359A, A376T, A435V; RT-p66: V179E, R211G, M357R, T359A, A376T, A435V; gp120: N52S, M56I, E102K, -104R, -105D, -106S, -107S, -115P, -116E, A133I, V136E, V137L, K141Y, N158E, N167K, N169K, I173V, S181T, A238S, V258A, K307I, D308T, E312K, Q315E, R316G, S318K, N332E, T334A, S335P, S337A, G365-, T366-, Y367-, -382G, -384Y, -385T, I386F, P389Q, K418S, R428W, -433G, N434T, E438-, T439-, E481G; gp41: A14V, I24M, S107T, N140S, K172R, S205L, G214E, E223G, I235R, L242F, V304F, E320K, Y330C; nef: I10K, V11I, G12E, A15T, T23A, E24G, P25-, T44S, Y81F, F135Y, R178G, R192K; p1: K10S; p17: K26R, K114T, K119-; p2: -10T, -11A; p24: L6I, S120G; p6: E34G, Y36H, K42R; p7: P9S, K10R, R11K, K20R, R26K; pro: I72T; rev: S8G, E11A, L13I, I21L, E30K, R32G, H53Q, S54A, S61C, S112P, A114T; tat: T23N, V36A, Q54R, R57S, P59H, N67T, S70P, R76Q, Q78R, G79R; vif: N36K, D45E, V85A, G182D; vpr: I60L, Q77R, A93T; vpu: A16T, R37K"}}}]}, {"name": "CRF07_BC_NODE_0000020", "node_attrs": {"div": 0.14591, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A521C", "C525T", "A617G", "G702-", "G703-", "T944C", "G1450A", "T1610C", "G1757A", "G1773-", "A1774-", "C1775-", "A1776-", "A1777-", "G1778-", "G1779-", "A1780-", "A1781-", "C1782-", "T1783-", "A1784-", "T1785-", "A1786-", "T1787-", "C1788-", "C1789-", "T1790-", "T1791-", "T1792-", "A1793-", "C1828T", "C2005T", "C2107T", "G2177A", "A2189G", "G2221A", "T2263C", "C2575T", "T2632C", "A2838T", "A2840C", "A3107T", "C3121T", "A3283G", "T3391C", "A3535C", "A3545C", "G3772A", "G3816A", "A3973C", "A3988G", "G4027A", "A4178C", "T4381C", "G4423A", "T4606C", "A4682C", "G4685A", "C4721G", "T4832A", "C4841T", "C4889T", "C4967T", "T5091C", "T5114G", "T5125C", "A5148T", "A5225G", "C5237T", "T5239C", "T5292C", "A5312G", "C5397T", "G5493A", "A5537C", "G5614A", "G5673A", "T5686C", "T5788C", "T5789A", "C5792A", "A5804C", "G5809-", "G5810-", "G5811-", "G5839A", "A6160C", "-6168A", "-6172T", "C6189G", "C6193T", "-6207G", "-6210G", "-6213A", "G6273A", "C6324A", "G6573A", "C6638A", "A6781T", "-6830C", "-6831C", "-6832G", "G6947A", "-6999G", "-7001A", "-7002A", "-7003T", "-7151A", "A7373G", "G7428A", "G7782A", "C7932T", "G8032A", "T8264G", "C8791A", "A8887T", "T8923G"], "INT": ["R14K", "M84I", "I135L"], "RT-p51": ["E28K", "K32E", "E248V", "K249Q", "T338S"], "RT-p66": ["E28K", "K32E", "E248V", "K249Q", "T338S", "Q480H", "I484L"], "gp120": ["M56I", "E102N", "-104T", "-105D", "-106V", "-119T", "T157D", "G240E", "K309D", "G365S", "-378N", "-384S", "-436E"], "gp41": ["S42N", "T210I", "L321V"], "nef": ["P150Q", "K182M", "M194R"], "p17": ["K62N"], "p6": ["D32-", "K33-", "E34-", "L35-", "Y36-", "P37-", "L38-", "S50L"], "rev": ["A62T"], "tat": ["P75S"], "vif": ["V7A", "D45E", "N176K", "I180T", "T188S"], "vpr": ["S4A", "Y15F", "S41G", "H45Y", "I63T", "I70V"], "vpu": ["A3T", "F27L", "E60D", "L61Q", "S62E", "A63E", "F64L", "M65L", "E66A", "G68-", "-71M", "-72G", "D78N"]}, "labels": {"aa": "INT: R14K, M84I, I135L; RT-p51: E28K, K32E, E248V, K249Q, T338S; RT-p66: E28K, K32E, E248V, K249Q, T338S, Q480H, I484L; gp120: M56I, E102N, -104T, -105D, -106V, -119T, T157D, G240E, K309D, G365S, -378N, -384S, -436E; gp41: S42N, T210I, L321V; nef: P150Q, K182M, M194R; p17: K62N; p6: D32-, K33-, E34-, L35-, Y36-, P37-, L38-, S50L; rev: A62T; tat: P75S; vif: V7A, D45E, N176K, I180T, T188S; vpr: S4A, Y15F, S41G, H45Y, I63T, I70V; vpu: A3T, F27L, E60D, L61Q, S62E, A63E, F64L, M65L, E66A, G68-, -71M, -72G, D78N"}}, "children": [{"name": "MT611505", "node_attrs": {"div": 0.18143, "accession": "MT611505", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "JX_GZ_27_M_SG_6"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A418G", "C435A", "T495G", "G608C", "C662G", "A665C", "T668G", "-699A", "-700G", "-702A", "-703A", "A715-", "G716-", "C719T", "G818A", "C830T", "T852A", "A920G", "T978A", "T979C", "A1073G", "A1134G", "C1229T", "A1242G", "C1243T", "G1253A", "G1339A", "T1385C", "A1397G", "A1418G", "G1421T", "A1443G", "A1446C", "C1448A", "T1451C", "-1452G", "-1453C", "-1454A", "-1455A", "-1456A", "-1457T", "G1458-", "C1459-", "C1460-", "A1495G", "G1543A", "A1587C", "C1628T", "A1657G", "A1689C", "A1717G", "C1741T", "A1742G", "C1831T", "A1907G", "A1927G", "T2035C", "G2042A", "G2068A", "C2083T", "T2095C", "T2129C", "T2212G", "G2293A", "G2305A", "G2329A", "G2392A", "A2419G", "C2584T", "G2602A", "A2641G", "T2653C", "G2727A", "G2951A", "C3032T", "T3045C", "A3109G", "C3140T", "A3190G", "G3205A", "T3225C", "A3251G", "C3252T", "T3253C", "T3266C", "T3328C", "T3359C", "C3380T", "G3398A", "G3442A", "G3532A", "T3589C", "A3601C", "G3643T", "A3675G", "A3682G", "G3684A", "A3718G", "G3766A", "C3779T", "A4012G", "C4042T", "T4240C", "G4267A", "G4268A", "A4369G", "C4471T", "A4555T", "G4737A", "G4769A", "G4779A", "G4799A", "G4802A", "T4857A", "G4861A", "G4901A", "A4966G", "A4968G", "G5009A", "G5087A", "G5099A", "A5121C", "G5134A", "C5197T", "T5209C", "A5272G", "A5282T", "G5296A", "G5330T", "T5355G", "T5406C", "G5427A", "A5447G", "A5481G", "G5482T", "T5484A", "C5552A", "G5558A", "A5601T", "A5613G", "A5614C", "T5617A", "A5619G", "A5620C", "C5621A", "C5622A", "C5651T", "A5655G", "A5656C", "A5685G", "T5707A", "T5708G", "G5711A", "G5717A", "A5721G", "T5778C", "C5781T", "A5787T", "A5790T", "T5791G", "G5793A", "C5795A", "T5799G", "A5800T", "G5805A", "A5806T", "G5808T", "-5812A", "-5813T", "-5814G", "-5815T", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5868G", "C5916A", "A5946G", "A6019G", "G6022A", "G6023A", "A6067C", "A6088T", "T6100C", "A6103G", "T6109C", "C6139T", "C6160T", "-6165A", "-6167G", "-6174G", "-6175T", "-6179A", "-6180G", "-6183C", "-6185G", "-6186T", "T6187C", "G6189A", "A6194-", "A6195-", "T6196-", "A6197-", "G6198-", "T6199-", "A6200-", "A6201-", "T6202-", "-6205G", "-6214A", "A6230-", "T6238C", "G6280C", "T6287C", "G6323A", "A6326G", "-6335T", "T6341G", "T6343G", "G6345A", "A6346C", "C6418T", "T6421C", "C6424T", "T6427G", "A6442G", "C6465A", "C6488A", "G6550A", "C6607T", "T6612C", "A6638G", "T6643G", "A6648C", "T6654A", "C6667T", "G6668A", "G6669A", "G6694A", "C6766T", "G6774A", "A6780G", "G6788A", "T6808A", "A6809G", "A6825T", "A6848G", "A6849T", "C6855A", "A6856T", "T6857G", "C6858A", "C6874T", "T6883A", "A6905G", "T6925C", "C6937T", "T6957A", "-6958T", "T6961-", "T6964-", "-6971A", "-6972G", "-6973T", "-6974A", "-6975C", "-6976A", "-6977T", "-6978A", "-6979C", "-6980A", "-6981G", "-6982G", "-6983T", "-6985T", "-6986A", "-6987A", "-6988T", "-6989G", "-6990G", "-6991T", "-6992A", "-6993C", "-6994A", "-6995G", "-6996A", "-6998G", "-7000T", "-7004T", "-7005C", "-7006A", "-7007A", "-7008G", "-7009C", "C7018T", "G7026A", "T7039C", "G7057A", "C7089A", "C7124T", "C7127T", "A7135G", "T7141C", "A7147G", "-7150T", "-7152T", "-7153A", "-7155C", "-7156A", "-7157G", "-7158A", "-7159G", "-7160G", "-7161A", "-7162G", "C7174T", "G7190A", "G7197A", "T7243C", "C7264A", "C7269A", "A7270G", "G7373T", "G7589A", "C7590A", "T7591C", "T7624A", "G7640A", "G7677A", "A7732G", "T7783C", "T7801C", "G7846A", "C7876T", "G7885A", "G7944A", "G7997A", "A8032T", "C8038T", "G8050A", "A8098G", "A8118T", "T8155C", "G8185A", "G8213C", "T8218C", "A8219G", "A8222T", "G8254A", "T8268C", "A8273G", "C8276T", "T8278G", "T8279G", "G8280T", "T8291A", "A8292T", "C8293T", "A8294C", "C8296T", "G8304C", "T8321C", "G8354A", "G8393A", "G8402A", "A8409G", "A8456G", "A8458G", "C8491A", "T8492A", "C8514T", "G8516A", "T8543C", "T8558C", "G8561A", "A8564G", "A8584T", "T8597A", "G8639T", "T8651C"], "INT": ["V165I"], "RT-p51": ["D39E", "R211K", "A286T", "P313S", "V317A", "M377T", "T386V", "A435T"], "RT-p66": ["D39E", "R211K", "A286T", "P313S", "V317A", "M377T", "T386V", "A435T", "E516D", "K527R", "R530K"], "gp120": ["N5S", "T21N", "K31R", "V57I", "E71D", "E78D", "T104K", "-107S", "-109S", "-110T", "-111V", "-112N", "Q142H", "Y145H", "D157N", "N158E", "R164V", "T204K", "H212N", "V253A", "E265A", "V267E", "G272N", "D309S", "E312K", "S318G", "K319E", "H324L", "N332V", "T334N", "S335E", "R351G", "-368N", "-373S", "-374T", "-375Y", "-376R", "-377S", "-379G", "-380T", "-381E", "-382G", "-385V", "R391K", "A412E", "-433I", "N434T", "-435E", "D446N", "R448K", "A472E"], "gp41": ["I24L", "A96N", "D113N", "S125N", "G214E", "D232N", "E272V", "V304L", "T306A", "I307L", "V322A", "R324G", "C326V", "Y330I", "N331H", "R334T", "F340L"], "nef": ["M20I", "T23A", "K39R", "A50E", "Y81F", "F85L"], "p1": ["H9R"], "p17": ["H28R", "L34I", "S54A", "N109K", "K110N", "I111M", "-122R"], "p2": ["-7A", "T8Q", "-11A", "-12N"], "p24": ["S41T", "L83T", "I135V", "T171V", "R203K"], "p6": ["E13G", "T21M", "S51L"], "p7": ["K10R", "R26K", "K41Q"], "pro": ["N37D", "V82I"], "rev": ["S8R", "L13I", "A15T", "R50K", "T62S", "A68T", "S84G", "S103P", "G113R"], "tat": ["N24S", "V36L", "T39I", "Q54P", "P59H", "S61N", "G79R"], "vif": ["V51I", "V65I", "L91M", "R92K", "H127R", "I128V", "K179Q", "R183H"], "vpr": ["E6A", "I60L", "L84V"], "vpu": ["T3P", "L4M", "T5Q", "A15V", "I17L", "L34R", "R35K", "R37K", "Q61H", "M67F", "-68M", "-69*"]}, "labels": {"aa": "INT: V165I; RT-p51: D39E, R211K, A286T, P313S, V317A, M377T, T386V, A435T; RT-p66: D39E, R211K, A286T, P313S, V317A, M377T, T386V, A435T, E516D, K527R, R530K; gp120: N5S, T21N, K31R, V57I, E71D, E78D, T104K, -107S, -109S, -110T, -111V, -112N, Q142H, Y145H, D157N, N158E, R164V, T204K, H212N, V253A, E265A, V267E, G272N, D309S, E312K, S318G, K319E, H324L, N332V, T334N, S335E, R351G, -368N, -373S, -374T, -375Y, -376R, -377S, -379G, -380T, -381E, -382G, -385V, R391K, A412E, -433I, N434T, -435E, D446N, 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"CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G315A", "C316G", "G317A", "A319G", "A359G", "G579A", "C604A", "G607A", "A704-", "-711A", "-712A", "-713G", "-714A", "G770A", "C771G", "A774T", "T978G", "A1112G", "C1182T", "A1192G", "C1331A", "A1464C", "C1491T", "G1562A", "A1988G", "C1996T", "T2158A", "T2356C", "A2368G", "C2383T", "A2755G", "T2758C", "T2996C", "A3034G", "A3136G", "G3292A", "A3388G", "C3391A", "C3399G", "G3543A", "A3772C", "C3922T", "C4576T", "T4694G", "T4776A", "A4782C", "A4878C", "T5062G", "G5134A", "G5137A", "T5147C", "A5284G", "T5355G", "G5463A", "T5492C", "C5537A", "A5576T", "C5579T", "T5626G", "A5694G", "C5788G", "A5792T", "C5804A", "-5809G", "-5810G", "-5811G", "C5917T", "G6002A", "A6020C", "-6165C", "-6167G", "-6174G", "-6175C", "-6179A", "-6180G", "-6183G", "-6185A", "-6186G", "C6190T", "A6191C", "A6192C", "G6198C", "A6200C", "-6203G", "T6208C", "G6210T", "-6214G", "-6227G", "-6228A", "-6229A", "G6232A", "T6250C", "G6267A", "A6329G", "C6334A", "-6335G", 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N113-, -117P, -118N, -120H, -121D, -122S, -123M, -124K, M126I, R138K, K159E, S160T, S161A, -162N, V253A, E265A, K307R, K308A, D309A, T313I, Q315L, S365N, -368M, -369P, -370N, -371G, -372T, -373F, -374T, -375G, -376P, -377G, -379N, -385N, E401G, R404Q, A412E, K418R, N432Q, T437D; gp41: V2A, F188L, F241L, V264A, A268T, A300T, I301V, I319L, Q323R, A342I, A343I; nef: S8R, A15D, P25T, G83A, Q125H, D149N; p17: V82I, T90K, G91E, -122K; p2: -7T, T8N, -10A, M14L; p24: P14A, I15L, L83V, K154R; p7: P9S; pro: I64V; rev: I21F, T34S, L60I, P67S, S86N, G104R; tat: N67I, P68L, D80V; vif: N36K, L64I, I66L, I98L, I159R, R183H, R184K; vpr: F15L, I60M, L84V; vpu: L7V, L65A, A66F"}}}, {"name": "CRF07_BC_NODE_0000022", "node_attrs": {"div": 0.15639, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["G818A", "A920G", "A1089G", "G1253A", "C1831T", "A1834C", "C2083T", "G2293A", "G2392A", "A2419G", "T3266C", "C4042T", "G4769A", "G4887A", "A5272G", "G5296A", "T5584C", "G5700A", 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"T4857G", "A4865G", "A4878C", "T5147C", "A5236G", "C5242T", "T5314G", "A5493G", "G5538A", "C5539A", "G5543-", "A5544-", "A5556G", "A5576G", "T5597-", "A5598-", "C5611-", "A5612-", "A5613-", "A5614-", "C5615-", "T5616-", "T5617-", "T5618-", "A5619-", "A5620-", "C5621-", "C5622-", "A5623-", "T5624-", "T5739G", "T5799G", "T5800G", "T5801C", "G5802C", "G5803T", "C5804T", "G5805T", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5827G", "G5861-", "C5862-", "A5863-", "A5866G", "C5878T", "A5908G", "G6022A", "T6046C", "T6101A", "G6133A", "T6163-", "A6164-", "A6166-", "A6168-", "T6169-", "G6170-", "T6171-", "T6172-", "A6173-", "A6176-", "A6177-", "T6178-", "T6181-", "A6182-", "T6184-", "G6189C", "C6190A", "A6204G", "T6205C", "G6210A", "A6213G", "-6215A", "-6216G", "-6218C", "-6223A", "G6263A", "T6285C", "T6325-", "A6326-", "A6327-", "T6328-", "A6329-", "A6330-", "C6331-", "T6332-", "C6333-", "T6334-", "G6336-", "T6337-", "G6338-", "A6339-", "G6397A", 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"A8533-", "G8588A", "A8617G", "G8678A", "A8793G", "G8805A", "A8823G", "A8886G", "A8893G", "G8894A", "A8953C", "A8954G", "G8955-", "A8956-", "C8957-", "T8958-", "G8959-", "C8960-", "T8961-", "G8962-", "A8963-", "C8964-", "A8965-", "C8966-", "A8967-", "G8968-", "A8969-", "A8980-", "G8991A"], "INT": ["K160R"], "RT-p51": ["Y121H", "Q174K", "V317A"], "RT-p66": ["Y121H", "Q174K", "V317A"], "gp120": ["A3G", "G4N", "N5-", "L83I", "D105-", "V106-", "N113S", "T119R", "-120Q", "V137I", "V144A", "D157-", "N158-", "S159-", "S160-", "S161-", "L198F", "N251D", "G272N", "H302Y", "K307G", "E312D", "Q315H", "P326Q", "N332Q", "T334N", "S336P", "S337-"], "gp41": ["G214-", "N239S", "A268T", "R277K", "G278V", "G293S", "I318F", "G322V", "R324G", "L325F"], "nef": ["G3S", "I10-", "V11-", "E64-", "K92R", "R151G", "E155K", "N161D", "M182V", "K184R", "K204T"], "p17": ["N62K", "Q112-", "Q113-", "K114-", "T115-", "K119E", "D121-", "K123-"], "p2": ["-7T", "T8N"], "p24": ["I91V"], "p6": ["E6-", "P7-", "T8-", "E20-", "I21-", "Q26P"], "p7": ["N5H", "R26K"], "rev": ["S8Q", "E10-", "T54A", "S86N", "G111E"], "tat": ["T39M"], "vif": ["R34K", "V51I", "L91V", "I98L"], "vpr": ["F15L"], "vpu": ["Q2-", "T3-", "L4-", "T5-", "I6-"]}, "labels": {"aa": "INT: K160R; RT-p51: Y121H, Q174K, V317A; RT-p66: Y121H, Q174K, V317A; gp120: A3G, G4N, N5-, L83I, D105-, V106-, N113S, T119R, -120Q, V137I, V144A, D157-, N158-, S159-, S160-, S161-, L198F, N251D, G272N, H302Y, K307G, E312D, Q315H, P326Q, N332Q, T334N, S336P, S337-; gp41: G214-, N239S, A268T, R277K, G278V, G293S, I318F, G322V, R324G, L325F; nef: G3S, I10-, V11-, E64-, K92R, R151G, E155K, N161D, M182V, K184R, K204T; p17: N62K, Q112-, Q113-, K114-, T115-, K119E, D121-, K123-; p2: -7T, T8N; p24: I91V; p6: E6-, P7-, T8-, E20-, I21-, Q26P; p7: N5H, R26K; rev: S8Q, E10-, T54A, S86N, G111E; tat: T39M; vif: R34K, V51I, L91V, I98L; vpr: F15L; vpu: Q2-, T3-, L4-, T5-, I6-"}}}, {"name": "CRF07_BC_NODE_0000023", "node_attrs": {"div": 0.15745, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T667G", "-702G", "-703G", "A1450G", "T2129C", "-6165C", "-6174A", "-6175C", "A6213C", "-6340G", "A6500T", "G6774A", "-6960A", "-6992A", "-6993C", "-6994A", "-6995G", "-6996A", "-7000T", "-7004T", "-7006G", "-7008C", "-7009C", "-7162G", "C7170T", "G8213T"], "gp120": ["-124Q", "T216S"], "gp41": ["V304F"], "p17": ["I111S"], "p2": ["-10S", "-11A"]}, "labels": {"aa": "gp120: -124Q, T216S; gp41: V304F; p17: I111S; p2: -10S, -11A"}}, "children": [{"name": "JX960600", "node_attrs": {"div": 0.17276, "accession": "JX960600", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09LNA446"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A488G", "G667A", "-701A", "C780G", "A833C", "A1070C", "C1187T", "G1417A", "A1433C", "A1486G", "C1491T", "A1595G", "G1619A", "A1657G", "C1741T", "A1879G", "A2161G", "C2584T", "G2602A", "G2821A", "C3032A", 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["I56M", "D105N", "-107N", "-108N", "-109N", "-110S", "N111S", "-120L", "-121E", "-122N", "-123I", "E136I", "V137L", "R138K", "P155Q", "D157K", "S161E", "E240K", "S278G", "K308R", "K311E", "E312K", "H324T", "F325L"], "gp41": ["D113N", "D137V", "N239T", "Y257C", "A300T", "S302G", "I318V", "F340I", "A342I", "A343V"], "nef": ["E24V", "R35Q", "H40Y", "A53D", "D54A"], "p1": ["H9R"], "p17": ["S111N"], "p24": ["P17A", "E113D", "R229K"], "p6": ["A23T"], "p7": ["K7R", "P9S"], "rev": ["S8R", "E57D", "T62A", "P67S", "S112A"], "tat": ["N7S", "K29Q", "T39I"], "vif": ["A7V", "L8M", "R34K", "K67R", "R92S", "I166V", "H187L"], "vpr": ["I60M", "R62K", "T63S", "L84I", "T89A"], "vpu": ["T5N", "A19V", "M67S", "-68M", "H74Y", "W77R"]}, "labels": {"aa": "INT: A278D; RT-p51: P313T, E370D; RT-p66: P313T, E370D; gp120: I56M, D105N, -107N, -108N, -109N, -110S, N111S, -120L, -121E, -122N, -123I, E136I, V137L, R138K, P155Q, D157K, S161E, E240K, S278G, K308R, K311E, E312K, H324T, F325L; gp41: D113N, D137V, N239T, Y257C, A300T, S302G, I318V, F340I, A342I, A343V; nef: E24V, R35Q, H40Y, A53D, D54A; p1: H9R; p17: S111N; p24: P17A, E113D, R229K; p6: A23T; p7: K7R, P9S; rev: S8R, E57D, T62A, P67S, S112A; tat: N7S, K29Q, T39I; vif: A7V, L8M, R34K, K67R, R92S, I166V, H187L; vpr: I60M, R62K, T63S, L84I, T89A; vpu: T5N, A19V, M67S, -68M, H74Y, W77R"}}}, {"name": "CRF07_BC_NODE_0000024", "node_attrs": {"div": 0.15985000000000002, "clade_membership": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["T495G", "G607A", "G690A", "C694A", "T695G", "C698T", "-699A", "-700C", "T1052C", "A1445G", "C1628T", "G2027A", "G2210A", "G5546A", "C6052T", "A6177G", "-6216A", "-6323G", "-6959A", "-6962G", "-6963G", "-6965A", "-6966C", "-6967A", "-6968T", "-6969T", "-6970T", "-7005T", "G7441A", "C7692T", "A7722T", "G7734A", "G8360A"], "gp120": ["-162E"], "gp41": ["I4L", "T130I", "N140I", "R144K"], "p17": ["S54A", "A120E"], "pro": ["V77I"], "tat": ["R57K", "S70P"]}, "labels": {"aa": "gp120: -162E; gp41: I4L, T130I, N140I, R144K; p17: S54A, A120E; pro: V77I; tat: R57K, S70P"}}, "children": [{"name": "MT021910", "node_attrs": {"div": 0.1831, "accession": "MT021910", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "KR"}, "date": {"value": 2016.0}, "Strain_name": {"value": "KR050"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C151T", "C152-", "T165A", "G224C", "-280G", "T309-", "C419A", "T424G", "G554A", "A603G", "G612A", "G692A", "A697C", "-701G", "T731C", "C749T", "C771G", "A774C", "T1103C", "C1182T", "C1220T", "C1229T", "A1307G", "T1511C", "G1562A", "A1601G", "G1715A", "C1741G", "A1742G", "A1746G", "C1979G", "A2006C", "C2010T", "A2059G", "A2128G", "A2293G", "A2380T", "G2413A", "T2434C", "T2456C", "A2593G", "T2608C", "T2770C", "G2830A", "A2919G", "C2975T", "T3045C", "C3067T", "G3097T", "A3124G", "C3207T", "A3224C", "C3266A", "G3283A", "T3405C", "C3475T", "G3477A", "G3631A", "G3684A", "A3772C", "A3775G", "T3799C", "C3991T", "A4174G", 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"P294S", "V317A", "Q334H", "A371V", "M377L", "L391I", "V437A"], "RT-p66": ["D39N", "Y121H", "K275R", "P294S", "V317A", "Q334H", "A371V", "M377L", "L391I", "V437A", "R461K", "R530K"], "gp120": ["S1N", "V57G", "N117D", "S118N", "T119S", "-120T", "-123K", "N132Y", "T133A", "T134K", "T135K", "R138G", "K143E", "R150K", "S161G", "A172V", "T174K", "V244I", "N251D", "S263A", "T269I", "K311E", "Q315H", "N316K", "K319I", "P326K", "S337A", "R351G", "S365G", "-368F", "-370S", "N378-", "-382G", "-385P", "N432S", "-433N", "-435T", "D446N", "V468I", "A472G"], "gp41": ["A30V", "N42S", "A71S", "K77Q", "R133K", "D137I", "T165S", "A245I", "S256L", "L265S", "R277N", "I318V", "Q323R", "N331H", "F340L", "A342I", "A343V"], "nef": ["A15D", "T23A", "A60T", "E63D", "F135Y", "R151K", "E174D", "H191R", "R194W"], "p17": ["H28Q", "M30R", "T90A", "G91E", "D93N", "D121A"], "p24": ["P14A", "I15L"], "p6": ["I21R"], "pro": ["Q61E", "K70Q", "A71V"], "rev": ["S5E", "E6-", "S8R", "E11N", "I21F", "C63Y", "P67S", "Q74P", "E87K"], "tat": ["T39M", "K51-", "A58P", "N67I", "I69L"], "vif": ["K17R", "V31R", "L59V", "R92G", "R93N", "I98M", "K158Q", "V170A"], "vpr": ["S96P"], "vpu": ["T5A", "A11G", "H74R", "V79I"]}, "labels": {"aa": "INT: S234N; RT-p51: D39N, Y121H, K275R, P294S, V317A, Q334H, A371V, M377L, L391I, V437A; RT-p66: D39N, Y121H, K275R, P294S, V317A, Q334H, A371V, M377L, L391I, V437A, R461K, R530K; gp120: S1N, V57G, N117D, S118N, T119S, -120T, -123K, N132Y, T133A, T134K, T135K, R138G, K143E, R150K, S161G, A172V, T174K, V244I, N251D, S263A, T269I, K311E, Q315H, N316K, K319I, P326K, S337A, R351G, S365G, -368F, -370S, N378-, -382G, -385P, N432S, -433N, -435T, D446N, V468I, A472G; gp41: A30V, N42S, A71S, K77Q, R133K, D137I, T165S, A245I, S256L, L265S, R277N, I318V, Q323R, N331H, F340L, A342I, A343V; nef: A15D, T23A, A60T, E63D, F135Y, R151K, E174D, H191R, R194W; p17: H28Q, M30R, T90A, G91E, D93N, D121A; p24: P14A, I15L; p6: I21R; pro: Q61E, K70Q, A71V; rev: S5E, E6-, S8R, E11N, I21F, C63Y, P67S, Q74P, E87K; tat: T39M, K51-, A58P, N67I, I69L; vif: K17R, V31R, L59V, R92G, R93N, I98M, K158Q, V170A; vpr: S96P; vpu: T5A, A11G, H74R, V79I"}}}, {"name": "MT611502", "node_attrs": {"div": 0.18278000000000003, "accession": "MT611502", "clade_membership": {"value": "CRF07_BC"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "JX_GZ_44_M_SG_1"}, "LANL_subtype": {"value": "CRF07_BC"}}, "branch_attrs": {"mutations": {"nuc": ["C419T", "G463A", "A513C", "G579T", "C604A", "G608C", "C618A", "C623T", "-701A", "C747A", "A815G", "C897T", "A1002G", "C1060A", "G1088A", "G1089A", "T1121C", "T1172C", "C1211A", "T1325C", "T1385C", "G1421A", "T1501C", "G1543A", "C1652T", "C1692A", "A1743G", "A1746C", "A1770G", "A1982G", "A2211C", "T2456G", "C2503T", "A2569G", "T2719C", "G2752A", "G2833A", "T2911G", "A2929G", "G2951A", "A3020C", "A3103G", "T3181A", "G3221T", "C3222G", "G3487A", "A3490G", "T3541C", "T3628C", "G3643A", "C3691T", "C3763T", "A3814G", "C3865T", "A3866G", "G3920C", "A4060G", "G4063A", "C4146G", "G4219A", "A4225G", "G4268A", "A4422T", "T4441C", "A4573G", "C4724T", "A4735G", "T4886C", "A4887G", "T4912G", "A4937C", "A5057G", "A5090G", "T5147C", "G5225A", "G5267A", "G5272A", "A5282T", "G5412C", "A5421G", "T5492C", "C5537A", "A5547G", "A5555C", "A5614G", "A5704T", "T5707A", "T5708G", "G5717A", "A5720G", "G5775C", "C5781T", "G5784A", "T5787A", "C5788G", "G5791T", "A5792T", "A5795C", "T5800C", "C5804A", "-5809G", "-5810G", "-5811G", "C5827A", "C5851A", "G5911T", "T5956G", "C5958A", "A6020C", "T6085A", "T6109A", "C6115T", "C6116T", "-6167A", "-6179A", "-6180A", "-6183G", "-6185A", "-6186G", "T6187C", "C6190T", "G6198A", "G6210C", "T6211C", "A6212C", "C6213T", "-6215G", "-6218A", "G6220C", "G6221A", "A6222T", "-6223G", "-6224C", "-6225A", "-6226G", "-6227G", "-6228A", "-6229A", "A6234C", "G6263T", "A6279G", "A6283T", "T6285A", "T6296G", "A6304G", "A6311G", "C6320A", "-6324G", "-6335A", "G6440A", "A6443C", "G6465A", "A6508G", "G6520A", "T6641C", "G6732A", "A6776G", "A6777G", "A6790G", "A6798G", "A6850C", "A6907G", "C6951T", "T6957A", "-6958G", "-6980G", "-6981A", "-6982A", "-6983T", "-6984T", "-6985T", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "-6991T", "-6998A", "-7007A", "C7064A", "T7075C", "G7076A", "C7077A", "A7095C", "A7123G", "C7127T", "G7146A", "A7147G", "-7148A", "-7150T", "-7152G", "-7153C", "-7155C", "A7163T", "G7268A", "A7269C", "G7309A", "G7373T", "C7407T", "A7501G", "A7502G", "A7532G", "T7555G", "T7642A", "A7693C", "G7702C", "A7710G", "T7713A", "C7755A", "G7764A", "A7771C", "A7773G", "G7790A", "G7883A", "G7885A", "T7913C", "A7938C", "A7977G", "G8006A", "A8019G", "A8023C", "T8112C", "A8118C", "G8163A", "A8172T", "G8185A", "C8290A", "G8373A", "G8385A", "T8387G", "T8440C", "A8441C", "C8491A", "G8526A", "A8527C", "G8528A", "G8588A"], "INT": ["I31V", "A49P", "A124G", "V165I", "Q216L"], "RT-p51": ["D39T", "Y121D", "A286T", "I309L", "A376C"], "RT-p66": ["D39T", "Y121D", "A286T", "I309L", "A376C"], "gp120": ["E19D", "D34E", "T35K", "I56L", "H77Q", "D85E", "D105N", "-107N", "-108S", "-109N", "-110S", "N111S", "S115N", "-120L", "-121E", "-122N", "-123M", "K127T", "V137L", "Q142R", "K143N", "V144E", "F148V", "I153V", "L156I", "S159N", "A196T", "I197L", "R204K", "S263P", "A291T", "T292E", "G293D", "D294I", "K308G", "Q315R", "T366I", "-368K", "-370G", "-372F", "-373E", "-374F", "-379N", "-380T", "-382S", "-385T", "A408N", "N414T", "G431E", "N432L", "-435S", "E436T", "T437S", "A472T"], "gp41": ["V24L", "S35F", "T67A", "K77E", "I84M", "D113E", "R133S", "E136G", "A151E", "S154N", "K156N", "N157S", "V194I", "N212T", "E225G", "V235I", "N239S", "V270A", "S287N", "Q290L"], "nef": ["V11I", "A15K", "V33A", "A50D", "E62T"], "p17": ["R43K", "I60L", "V82L", "T90K", "G91D"], "p24": ["L6I", "I91V", "T110N", "G120S"], "p6": ["S3R", "P5T", "T22A", "S25P", "I31V"], "p7": ["I12T", "R26K"], "pro": ["I62V"], "rev": ["E11R", "K14Q", "E30D", "R53H", "T54S", "I59L", "Q95L", "G113R"], "tat": ["K12N", "P54Q", "Q60P", "T77P"], "vif": ["K50R", "S101G", "L109W", "E117D"], "vpr": ["F15L", "G41S", "A55T", "I60L"], "vpu": ["I33L", "L34R", "R37K", "K38R", "E56D", "L65A", "A66F", "M67L", "H74N", "L82M"]}, "labels": {"aa": "INT: I31V, A49P, A124G, V165I, Q216L; RT-p51: D39T, Y121D, A286T, I309L, A376C; RT-p66: D39T, Y121D, A286T, I309L, A376C; gp120: E19D, D34E, T35K, I56L, H77Q, D85E, D105N, -107N, -108S, -109N, -110S, N111S, S115N, -120L, -121E, -122N, -123M, K127T, V137L, Q142R, K143N, V144E, F148V, I153V, L156I, S159N, A196T, I197L, R204K, S263P, A291T, T292E, G293D, D294I, K308G, Q315R, T366I, -368K, -370G, -372F, -373E, -374F, -379N, -380T, -382S, -385T, A408N, N414T, G431E, N432L, -435S, E436T, T437S, A472T; gp41: V24L, S35F, T67A, K77E, I84M, D113E, R133S, E136G, A151E, S154N, K156N, N157S, V194I, N212T, E225G, V235I, N239S, V270A, S287N, Q290L; nef: V11I, A15K, V33A, A50D, E62T; p17: R43K, I60L, V82L, T90K, G91D; p24: L6I, I91V, T110N, G120S; p6: S3R, P5T, T22A, S25P, I31V; p7: I12T, R26K; pro: I62V; rev: E11R, K14Q, E30D, R53H, T54S, I59L, Q95L, G113R; tat: K12N, P54Q, Q60P, T77P; vif: K50R, S101G, L109W, E117D; vpr: F15L, G41S, A55T, I60L; vpu: I33L, L34R, R37K, K38R, E56D, L65A, A66F, M67L, H74N, L82M"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000452", "node_attrs": {"div": 0.01387, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T155C", "G166-", "A217-", "A256G", "G278A", "A304-", "A428G", "C503A", "C525T", "T539C", "C540A", "G644A", "G654A", "C662T", "A665G", "A677G", "-709G", "C890T", "T1040C", "C1229T", "A1493G", "G1495A", "T1504-", "T1505-", "A1536C", "G1588A", "C1987T", "G3989A", "T4412C", "G4695A", "A4838G", "A5215C", "C5371G", "T5382G", "C5495A", "C5563A", "T5611A", "-5620G", "T5621A", "T5627C", "T5788A", "T5789C", "-5806A", "C5824-", "T5826C", "C5851T", "G5861-", "A5866-", "A5911T", "A5915G", "C5917T", "A5956T", "G6023A", "A6142T", "-6199T", "A6809G", "A6856T", "G7055A", "G7339A", "G7552A", "C7625T", "G7627T", "G7660A", "G7701A", "T7703C", "A7720G", "C7825T", "G7846A", "C7941A", "G7947A", "A7977G", "A8019G", "T8037C", "A8143G", "A8172T", "A8216G", "G8243T", "T8369C", "C8386A", "T8387G", "G8402A", "C8450T", "G8465A", "C8499G", "C8504T", "G8531A", "A8537G", "T8747C", "G8970A", "-8971G", "A9027G", "C9028T", "T9068C"], "INT": ["V72I"], "gp120": ["A3S", "E19D", "T21D", "V57N", "K204N"], "gp41": ["N42S", "M118I", "R133N", "P213Q", "G215E", "E225G", "Q290L", "N305D", "G314W"], "nef": ["A15E"], "p17": ["Q69K"], "p2": ["A7V"], "p24": ["D187E", "S225G"], "p7": ["R10K", "V13-", "I24L", "R41K"], "rev": ["S99G"], "tat": ["T40K", "Q63K", "D80N"], "vif": ["I66V", "R92K"], "vpr": ["A89G", "S93A"], "vpu": ["L5E", "V7A", "L16F", "R35K", "R37K", "L61T", "M67L"]}, "labels": {"aa": "INT: V72I; gp120: A3S, E19D, T21D, V57N, K204N; gp41: N42S, M118I, R133N, P213Q, G215E, E225G, Q290L, N305D, G314W; nef: A15E; p17: Q69K; p2: A7V; p24: D187E, S225G; p7: R10K, V13-, I24L, R41K; rev: S99G; tat: T40K, Q63K, D80N; vif: I66V, R92K; vpr: A89G, S93A; vpu: L5E, V7A, L16F, R35K, R37K, L61T, M67L"}}, "children": [{"name": "NODE_0000453", "node_attrs": {"div": 0.02345, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-711A", "-713C", "C747G", "T748C", "G818A", "C926T", "T978A", "G989A", "T1271G", "T1403C", "A1446C", "A1743G", "T1754C", "C1775-", "A1781G", "-1784A", "-1785T", "-1786A", "A1819G", "C1986T", "C2083T", "T2266C", "G2293A", "A2842G", "A2950G", "A2985C", "A2998G", "C3207T", "G3307A", "G3442A", "G3643A", "G4176A", "A4228G", "G4774A", "C4820A", "A4858T", "G4861A", "C4871A", "C4911A", "T4919C", "T5028C", "G5140A", "A5173G", "G5185A", "C5251T", "T5293A", "A5372G", "C5398A", "T5415G", "A5548G", "A5556C", "A5557G", "G5566A", "A5655T", "C5658T", "A5703G", "G5717A", "A5955G", "A5959T", "T5964A", "C6110G", "T6134C", "-6173A", "T6285A", "T6289C", "A6292G", "T6298C", "-6340T", "C6375A", "A6790C", "A6810C", "A7007-", "C7008-", "A7044G", "T7165-", "A7275G", "T7411C", "G7688C", 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{"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G743A", "C892T", "C893G", "C904T", "T917C", "A920G", "G1067A", "C1175T", "A1247C", "C1292A", "T1299C", "C1316T", "C1492A", "G1794A", "G2707A", "A3292G", "A3772G", "T5062C", "A5446C", "A5612T", "G5620C", "A5707T", "A5718G", "A5781T", "A5793-", "G6311A", "G6323A", "A6578G", "G6638A", "T6641C", "-6955G", "C7469A", "G7658C", "A8829T", "G8846A"], "gp120": ["D157N", "S263P"], "gp41": ["Q56K", "D129Q", "F340L"], "nef": ["K151R"], "p24": ["T54M", "T58I", "P207A"], "rev": ["E11Q"], "vpu": ["Q2I"]}, "labels": {"aa": "gp120: D157N, S263P; gp41: Q56K, D129Q, F340L; nef: K151R; p24: T54M, T58I, P207A; rev: E11Q; vpu: Q2I"}}, "children": [{"name": "NODE_0000455", "node_attrs": {"div": 0.04339, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-217T", "-305T", "G542A", "G614T", "A706G", "C767T", "A776G", "T851C", "A866G", "C1598T", "A1981G", "T2206A", "G2273A", "C2420T", "T2452C", "G2459C", "A2460C", "T2476C", 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"C8294A", "T8321C", "A8441G", "A8555G", "C8688A", "T8835C", "G8882A", "T8993C", "G8994C", "T9012C", "T9014C"], "INT": ["S17N", "I31V", "S119P"], "RT-p51": ["V60I", "E122P", "D248E", "K431T"], "RT-p66": ["V60I", "E122P", "D248E", "K431T", "E529D"], "gp120": ["K18R", "-109S", "-111N", "-112T", "-114S", "-115T", "S181T", "K212T", "E239T", "I242V", "A253T", "T255N", "E262K", "E265K", "T308K", "N312D", "A318V", "N328-", "-385T", "L425I", "N435T", "N437-", "E479Q"], "gp41": ["D109N", "E110D", "I118L", "E119Q", "R122K", "G225E", "F263L", "S302N", "H331N"], "nef": ["H116N", "R192K"], "p17": ["E93D"], "p24": ["A14S", "T200S"], "rev": ["E32T", "I102V", "S112T"], "tat": ["R78N", "S87Q"], "vif": ["I51V", "Q83H", "G101D", "I128R"], "vpr": ["Y15N"], "vpu": ["D44E", "E58D", "D60E", "T61L", "E62S"]}, "labels": {"aa": "INT: S17N, I31V, S119P; RT-p51: V60I, E122P, D248E, K431T; RT-p66: V60I, E122P, D248E, K431T, E529D; gp120: K18R, -109S, -111N, -112T, -114S, -115T, S181T, K212T, E239T, I242V, A253T, T255N, E262K, E265K, T308K, N312D, A318V, N328-, -385T, L425I, N435T, N437-, E479Q; gp41: D109N, E110D, I118L, E119Q, R122K, G225E, F263L, S302N, H331N; nef: H116N, R192K; p17: E93D; p24: A14S, T200S; rev: E32T, I102V, S112T; tat: R78N, S87Q; vif: I51V, Q83H, G101D, I128R; vpr: Y15N; vpu: D44E, E58D, D60E, T61L, E62S"}}, "children": [{"name": "results/subtype_trees/CRF04_cpx.nwk", "node_attrs": {"div": 0.09936, "clade_membership": {"value": "CRF04_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T159A", "G184-", "A214T", "-304T", "C362T", "A386G", "A389G", "C456T", "T467C", "A513T", "A518G", "G534A", "A571T", "A578T", "G579T", "A592G", "T593G", "T596C", "G608A", "A705G", "C707T", "-714A", "G771A", "A803G", "T890C", "C902T", "T926A", "T979C", "T1181C", "G1199A", "T1214C", "C1220T", "A1242T", "C1243G", "T1253A", "G1256A", "T1322C", "A1329T", "T1334C", "G1339A", "C1350A", "C1362T", "G1404A", "G1424A", "A1442G", "T1444C", "C1446T", "-1452G", "-1455G", "-1456C", "-1457A", "-1458G", "-1459C", "G1474A", "G1476A", "-1503A", "-1504T", "-1505T", "A1526G", "C1535T", "T1574C", "A1642G", "T1646G", "A1657G", "G1661A", "A1691G", "A1709G", "A1712C", "C1724A", "G1726A", "T1728-", "T1729-", "C1730-", "G1731A", "A1733G", "G1734A", "G1736A", "A1740G", "T1741A", "A1742G", "G1743A", "C1745A", "-1746A", "-1747C", "-1748C", "C1749T", "C1754T", "G1766A", "A1771G", "-1775C", "G1781A", "G1835A", "A1857G", "A1861G", "A1867T", "G1972A", "T2011C", "A2057C", "A2194C", "A2233G", "C2266T", "C2281T", "T2299C", "A2304G", "A2350G", "A2380G", "C2464G", "A2579T", "A2614C", "T2620C", "T2632C", "G2704A", "A2727G", "T2737C", "T2770C", "A2788G", "A2818G", "G2830A", "C2845T", "A2866C", "C2930T", "C2941T", "G2950A", "C2953T", "A2959C", "G2980A", "G2984A", "A2995G", "G2998A", "G3004A", "A3019G", "A3043G", "T3045C", "A3088G", "A3099G", "T3118A", "T3132A", "A3151G", "A3154G", "G3165C", "G3166C", "A3192G", "T3207C", "A3217G", "C3225T", "A3226G", "A3230T", "A3259G", "C3266T", "A3280G", "G3292C", "T3328C", "G3340A", "G3391C", "T3399C", "A3435G", "G3439A", "T3445A", "T3450A", "A3451G", "C3475T", "A3503T", "C3542T", "T3602A", "A3630G", "A3643T", "C3649T", "A3674C", "T3754C", "G3766A", "A3814G", "C3826T", "T3829C", "G3896A", "A3937G", "C4006T", "C4021A", "A4150G", "A4270C", "A4273G", "A4306G", "A4391T", "C4396T", "A4483G", "T4537C", "A4543T", "C4576T", "T4585C", "G4636A", "T4656C", "G4677A", "T4703C", "T4730C", "A4735G", "A4774G", "C4786G", "T4805G", "A4806C", "G4816A", "A4820C", "T4826C", "G4859A", "A4861G", "A4871C", "C4883T", "A5049T", "G5086A", "C5095T", "A5134G", "C5149T", "G5212A", "A5272G", "A5293T", "C5294T", "C5342T", "G5359C", "A5360T", "G5363A", "A5366G", "G5371C", "G5372A", "A5373G", "A5375G", "A5376G", "A5398C", "G5415T", "A5418G", "A5432C", "C5446A", "A5453T", "T5454C", "A5471G", "T5472G", "T5491C", "A5493G", "G5496A", "G5534A", "A5535G", "G5548T", "C5556A", "A5566G", "G5575A", "C5602T", "A5611T", "T5612C", "C5614T", "T5616C", "A5619G", "A5625C", "G5626T", "C5627G", "A5628G", "T5641C", "A5643G", "A5652G", "T5653C", "T5655A", "T5670A", "C5679T", "G5699A", "G5703A", "C5704T", "T5707C", "A5717G", "G5730A", "A5733G", "A5734T", "T5735A", "T5736C", "G5737A", "A5788T", "C5789T", "-5791T", "G5794A", "A5804G", "-5809G", "-5810G", "-5811G", "C5827T", "A5840T", "T5843G", "T5860C", "-5861T", "G5864A", "C5884T", "T5911C", "T5917G", "T5923C", "G5955A", "C5958A", "T5959A", "A5964T", "G5972A", "A6023G", "G6029A", "A6113G", "C6165G", "-6180G", "C6190T", "-6198C", "-6200A", "-6201A", "-6202T", "-6203G", "-6205T", "-6206A", "-6207C", "-6209A", "-6210C", "-6211T", "-6212A", "-6213T", "-6214A", "-6223A", "-6226A", "C6289T", "A6316G", "T6427C", "G6463A", "G6466T", "A6476T", "A6500T", "A6502G", "T6511C", "A6514T", "C6545T", "T6562C", "C6563T", "A6576G", "A6581G", "G6593A", "C6619T", "A6635G", "C6641G", "C6667T", "-6689G", "-6697A", "-6698G", "-6699G", "-6700T", "-6701A", "-6702T", "A6706G", "G6716A", "T6720G", "C6721G", "T6735A", "T6766C", "A6781T", "C6807T", "C6810-", "T6829C", "-6833C", "-6834C", "-6835T", "C6850A", "A6854G", "-6952A", "G6954A", "-6956A", "-6957T", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964T", "-6965A", "-6966C", "-6967A", "-6977A", "-6980A", "-6981G", "-6982T", "-6983A", "-6984C", "-6985A", "-6986A", "-6987A", "-6988C", "-6989A", "-6990C", "-6993C", "-7007A", "-7008C", "-7009T", "A7055G", "G7056A", "A7060G", "T7075C", "T7081C", "C7087T", "A7095G", "C7101A", "A7102C", "T7105C", "T7107G", "A7108C", "A7112G", "C7124A", "A7152G", "-7162T", "T7192C", "T7217C", "A7240G", "C7250G", "A7280C", "G7289C", "A7301C", "A7339G", "G7366A", "A7426G", "T7433C", "G7459A", "G7517C", "A7525C", "C7633T", "T7636A", "T7642C", "C7645T", "G7677A", "A7693T", "A7700G", "C7703T", "A7706C", "A7741G", "A7756C", "G7773A", "G7790A", "G7807A", "A7846G", "T7852C", "G7862A", "A7938C", "T7968C", "G7992A", "G7997A", "G8019A", "A8029G", "G8030C", "G8036A", "C8037T", "G8055A", "A8076G", "G8079A", "G8087A", "A8093C", "G8098A", "C8103T", "A8128G", "C8129A", "C8131A", "G8143A", "A8152G", "T8164C", "T8167C", "T8243G", "G8245A", "G8255A", "T8265C", "A8272G", "G8329A", "A8338T", "G8348A", "C8351T", "G8354A", "A8370-", "A8386C", "A8402G", "A8405G", "A8409G", "C8412G", "C8413A", "T8414G", "A8425C", "T8450C", "A8453G", "T8456C", "A8465G", "-8490G", "G8499C", "C8503A", "T8504C", "T8505A", "G8506A", "T8507A", "G8528A", "T8558A", "G8588A", "G8590C", "T8597A", "T8607C", "T8608A", "C8699T", "G8732A", "T8740A", "A8746T", "A8754T", "C8755G", "T8786A", "A8793C", "A8798G", "A8801G", "A8812C", "C8831T", "C8832T", "A8837G", "T8847A", "T8887A", "T8904C", "C8905G", "C8913T", "G8914A", "G8915C", "G8917A", "C9023A", "A9095G"], "INT": ["D41N", "V112I", "N134D", "T206S", "E256D"], "RT-p51": ["K70R", "D123E", "I135T", "S162C", "K211R", "A297T", "V317A", "D335G", "F346Y", "R357T", "K366R", "V371A", "T377M", "S379C", "E399D", "E432D", "V435A"], "RT-p66": ["K70R", "D123E", "I135T", "S162C", "K211R", "A297T", "V317A", "D335G", "F346Y", "R357T", "K366R", "V371A", "T377M", "S379C", "E399D", "E432D", "V435A", "N447S", "L452Q", "T470S", "H483Y", "L503I", "K512R", "E516D", "K527Q", "S554N"], "gp120": ["D4N", "D21E", "S34D", "T35K", "K37V", "V40I", "N57A", "S87G", "-121K", "K150R", "D202E", "T208S", "T216S", "E241G", "I243V", "E247K", "N261A", "P263A", "I279V", "H280R", "A288T", "F289W", "D294N", "E309D", "K319E", "-326P", "-368M", "-370S", "-371T", "-372N", "-373S", "-374T", "-380T", "R401E", "N414S", "T416N", "N418S", "L424I", "-433S", "-436N", "L466V", "K474R"], "gp41": ["V72L", "R74S", "S125N", "N133D", "I135L", "S157N", "D163N", "V187I", "N212T", "I222T", "D232S", "A243P", "A245I", "H258R", "R259H", "D262N", "I264L", "A267V", "W314G", "V318I", "V321A"], "nef": ["E15A", "I20M", "T23A", "P24E", "E28A", "C55K", "G83A", "F85L", "F89H", "I133E", "Y135F", "T138C", "R151Q", "N157T", "C169S", "M182K", "S188R", "R191Y"], "p1": ["K4R", "I5M", "N9S"], "p17": ["I60L", "I61M", "A67T", "Y79F", "V82L", "Y86W", "Q127K"], "p2": ["V7A", "T8S", "-10A", "-12A"], "p24": ["L83T", "T171C", "R203K", "A207T", "G225S"], "p6": ["F15L", "G16E", "F17M", "G18K", "I21T", "A22T", "P23S", "K31R", "*50L"], "p7": ["R3K", "G4S", "-13I"], "pro": ["V13I", "K20R"], "rev": ["D7S", "S8T", "Q11D", "T14K", "K30N", "R50K", "S61A", "C63Y", "R80K", "H82T", "D84N", "T94D", "Q95K", "G99S", "S106P", "S107P", "T114A"], "tat": ["I8L", "Q13H", "K19T", "Y26F", "Y32W", "R53K", "Q54H", "T57G", "A58S", "N64D", "D67N", "T77P"], "vif": ["R17K", "V31I", "K50R", "K63R", "T67R", "H73Q", "T74P", "R77K", "E78D", "K92R", "R95S", "T151A", "T155S", "R167K", "H183R", "T188I"], "vpu": ["I2S", "A7W", "F16L", "R31K", "K35R", "K37R", "I43Y", "E44K", "E63T", "L67M", "-68G", "-70F", "-71D", "V79G"]}, "labels": {"aa": "INT: D41N, V112I, N134D, T206S, E256D; RT-p51: K70R, D123E, I135T, S162C, K211R, A297T, V317A, D335G, F346Y, R357T, K366R, V371A, T377M, S379C, E399D, E432D, V435A; RT-p66: K70R, D123E, I135T, S162C, K211R, A297T, V317A, D335G, F346Y, R357T, K366R, V371A, T377M, S379C, E399D, E432D, V435A, N447S, L452Q, T470S, H483Y, L503I, K512R, E516D, K527Q, S554N; gp120: D4N, D21E, S34D, T35K, K37V, V40I, N57A, S87G, -121K, K150R, D202E, T208S, T216S, E241G, I243V, E247K, N261A, P263A, I279V, H280R, A288T, F289W, D294N, E309D, K319E, -326P, -368M, -370S, -371T, -372N, -373S, -374T, -380T, R401E, N414S, T416N, N418S, L424I, -433S, -436N, L466V, K474R; gp41: V72L, R74S, S125N, N133D, I135L, S157N, D163N, V187I, N212T, I222T, D232S, A243P, A245I, H258R, R259H, D262N, I264L, A267V, W314G, V318I, V321A; nef: E15A, I20M, T23A, P24E, E28A, C55K, G83A, F85L, F89H, I133E, Y135F, T138C, R151Q, N157T, C169S, M182K, S188R, R191Y; p1: K4R, I5M, N9S; p17: I60L, I61M, A67T, Y79F, V82L, Y86W, Q127K; p2: V7A, T8S, -10A, -12A; p24: L83T, T171C, R203K, A207T, G225S; p6: F15L, G16E, F17M, G18K, I21T, A22T, P23S, K31R, *50L; p7: R3K, G4S, -13I; pro: V13I, K20R; rev: D7S, S8T, Q11D, T14K, K30N, R50K, S61A, C63Y, R80K, H82T, D84N, T94D, Q95K, G99S, S106P, S107P, T114A; tat: I8L, Q13H, K19T, Y26F, Y32W, R53K, Q54H, T57G, A58S, N64D, D67N, T77P; vif: R17K, V31I, K50R, K63R, T67R, H73Q, T74P, R77K, E78D, K92R, R95S, T151A, T155S, R167K, H183R, T188I; vpu: I2S, A7W, F16L, R31K, K35R, K37R, I43Y, E44K, E63T, L67M, -68G, -70F, -71D, V79G", "clade": "CRF04_cpx"}}, "children": [{"name": "CRF04_cpx_NODE_0000001", "node_attrs": {"div": 0.10047, "clade_membership": {"value": "CRF04_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G164A", "C207T", "A645G", "A656G", "A978G", "G1732T", "A2293G", "G2294A", "G2392A", "A2738T", "T2996C", "G3211A", "T5078C", "C5237T", "A5564G", "A5570G", "G5845A", "T5925C", "A6152G", "A6599T", "C6790A", "A6910G", "T6922C", "A7015G", "A8193G", "T8701A"], "RT-p51": ["D67N"], "RT-p66": ["D67N"], "gp120": ["L24P", "T100A", "I249F", "W367Y"], "gp41": ["K297R"], "nef": ["F120Y"], "p17": ["I104V"], "rev": ["R17G", "I19V"], "tat": ["K63R", "H65R"], "vpr": ["H45Y"], "vpu": ["P3S", "E5S"]}, "labels": {"aa": "RT-p51: D67N; RT-p66: D67N; gp120: L24P, T100A, I249F, W367Y; gp41: K297R; nef: F120Y; p17: I104V; rev: R17G, I19V; tat: K63R, H65R; vpr: H45Y; vpu: P3S, E5S"}}, "children": [{"name": "AF119820", "node_attrs": {"div": 0.12861, "accession": "AF119820", "clade_membership": {"value": "CRF04_cpx"}, "country": {"value": "GR"}, "date": {"value": 1991.0}, "Strain_name": {"value": "GR11_97PVCH"}, "LANL_subtype": {"value": "CRF04_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A16G", "A21G", "A50T", "G51A", "C60T", "C63T", "T65-", "A66-", "G68C", "A74-", "C80T", "T82-", "G83-", "T87-", "G88-", "A161T", "-166A", "-167A", "C179T", "-184C", "A374G", "A388G", "A500G", "A541G", "C558G", "C596T", "A606C", "A654G", "T662G", "A771G", "C917T", "G963T", "G1109A", "A1157T", "T1175C", "A1193G", "A1370G", "A1404G", "G1405C", "A1486G", "A1567G", "T1572C", "G1664A", "A1670G", "G1709A", "G1819A", "G1821C", "G1852A", "C1853A", "A1903T", "A1963G", "G1968A", "A2063C", "A2098C", "C2194T", "C2263T", "A2332G", "A2463C", "T2499C", "A2519G", "G2580A", "C2584T", "A2616G", "G2693A", "A2722T", 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"T215F", "K219Q", "P247V", "D250E", "P272A", "Q334L", "T403M", "D432E", "K451N", "V467I", "S468T", "S470P", "I503M", "Q509K", "R512K"], "gp120": ["T23S", "A57F", "E59K", "N64D", "D85E", "T104G", "-105D", "-106A", "-107T", "S109V", "N111T", "S114-", "T115-", "K121-", "I126M", "E144A", "N157-", "N159D", "R164M", "T170V", "T172S", "K174T", "V180I", "T181K", "K199Q", "N204R", "T212K", "A238S", "I244L", "K262E", "S278G", "R280H", "Q287K", "W289F", "Y290A", "A291T", "T292G", "G293E", "N294V", "Q300K", "G307E", "D312T", "V317I", "E319D", "K320E", "T330N", "I332T", "N334A", "S337A", "L341V", "N349R", "C350L", "K361D", "S365R", "S370E", "-379N", "-381T", "-382D", "-383E", "-384K", "T385I", "T387R", "R397N", "M398R", "M406I", "I411L", "I415L", "N416T", "C417A", "S418T", "S419Q", "N420V", "N434D", "N436G", "-437N", "K462Q", "K472R"], "gp41": ["L4I", "L9P", "S35F", "H53Q", "K56R", "I62V", "K77R", "K90R", "N109E", "D110K", "Q129E", "E136G", "S138A", "N160S", "N163D", "N166H", "I187V", "N195K", "F206S", "Q213T", "E215G", "E224G", "E225G", "S232I", "R233E", "I245V", "H259Q", "R269K", "R276I", "E280G", "A281T", "L296I", "N298S", "N302S", "I309V", "A325I"], "nef": ["G3N", "S9-", "I10-", "V11-", "G12-", "I16V", "A28V", "H40Y", "S45T", "L85V", "D98E", "E133T", "A156I", "E158A", "N161D", "R188L", "K192R", "I194M"], "p1": ["F1S"], "p17": ["K12R", "K28R", "L31I", "V35I", "P66S", "T81L", "L82I", "D93E", "I107M", "D121-", "T122-", "K127N"], "p2": ["N9S"], "p24": ["V3A", "I27V", "A31G", "T83V", "V86A", "I91N", "P93A", "I115V", "E128D", "P157T", "E180D"], "p6": ["P5T", "L15F", "P30Q", "L38I", "Q52R"], "p7": ["Q9P", "K10R", "I12S", "T50P"], "pro": ["K41R", "L63T", "I72T", "V82A", "I93L"], "rev": ["P31N", "K50N", "Q51R", "T62A", "Y63C", "L78I", "N84D", "S99N", "S103P", "A114D"], "tat": ["N23T", "K29V", "W32Y", "K40R", "G57R", "S58P", "P77Q", "N78H", "N80D"], "vif": ["I9T", "Y30H", "F39V", "R41K", "H48N", "V51A", "D61E", "R63K", "E76K", "R93S", "M109V", "V142P", "P177S", "R181K", "N186S", "Q187H"], "vpr": ["A4V", "N15H", "E21T", "N28I", "G41S", "N48Y", "W54R", "I63T", "I84L", "R85P"], "vpu": ["L4M", "I6S", "W7L", "V10T", "V21I", "V26A", "F27L", "K31R", "Y43C", "R47I", "E56D", "E66D", "F70-", "D71-", "P76-", "W77-", "V78-", "G79-", "D80-", "N81D"]}, "labels": {"aa": "INT: R20K, P119S, D134N, I141V, G192E, T218I, R231K, R263K; RT-p51: T35R, K43Q, I50V, T69N, T135I, I178M, R199K, T215F, K219Q, P247V, D250E, P272A, Q334L, T403M, D432E; RT-p66: T35R, K43Q, I50V, T69N, T135I, I178M, R199K, T215F, K219Q, P247V, D250E, P272A, Q334L, T403M, D432E, K451N, V467I, S468T, S470P, I503M, Q509K, R512K; gp120: T23S, A57F, E59K, N64D, D85E, T104G, -105D, -106A, -107T, S109V, N111T, S114-, T115-, K121-, I126M, E144A, N157-, N159D, R164M, T170V, T172S, K174T, V180I, T181K, K199Q, N204R, T212K, A238S, I244L, K262E, S278G, R280H, Q287K, W289F, Y290A, A291T, T292G, G293E, N294V, Q300K, G307E, D312T, V317I, E319D, K320E, T330N, I332T, N334A, S337A, L341V, N349R, C350L, K361D, S365R, S370E, -379N, -381T, -382D, -383E, -384K, T385I, T387R, R397N, M398R, M406I, I411L, I415L, N416T, C417A, S418T, S419Q, N420V, N434D, N436G, -437N, K462Q, K472R; gp41: L4I, L9P, S35F, H53Q, K56R, I62V, K77R, K90R, N109E, D110K, Q129E, E136G, S138A, N160S, N163D, N166H, I187V, N195K, F206S, Q213T, E215G, E224G, E225G, S232I, R233E, I245V, H259Q, R269K, R276I, E280G, A281T, L296I, N298S, N302S, I309V, A325I; nef: G3N, S9-, I10-, V11-, G12-, I16V, A28V, H40Y, S45T, L85V, D98E, E133T, A156I, E158A, N161D, R188L, K192R, I194M; p1: F1S; p17: K12R, K28R, L31I, V35I, P66S, T81L, L82I, D93E, I107M, D121-, T122-, K127N; p2: N9S; p24: V3A, I27V, A31G, T83V, V86A, I91N, P93A, I115V, E128D, P157T, E180D; p6: P5T, L15F, P30Q, L38I, Q52R; p7: Q9P, K10R, I12S, T50P; pro: K41R, L63T, I72T, V82A, I93L; rev: P31N, K50N, Q51R, T62A, Y63C, L78I, N84D, S99N, S103P, A114D; tat: N23T, K29V, W32Y, K40R, G57R, S58P, P77Q, N78H, N80D; vif: I9T, Y30H, F39V, R41K, H48N, V51A, D61E, R63K, E76K, R93S, M109V, V142P, P177S, R181K, N186S, Q187H; vpr: A4V, N15H, E21T, N28I, G41S, N48Y, W54R, I63T, I84L, R85P; vpu: L4M, I6S, W7L, V10T, V21I, V26A, F27L, K31R, Y43C, R47I, E56D, E66D, F70-, D71-, P76-, W77-, V78-, G79-, D80-, N81D"}}}]}, {"name": "CRF04_cpx_NODE_0000002", "node_attrs": {"div": 0.10291, "clade_membership": {"value": "CRF04_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C1137T", "T1501C", "G1687A", "A3162G", "A4105G", "A5200G", "A5395G", "A5545G", "C5620G", "C5639G", "C6210T", "C6446T", "T6460G", "C6708G", "T6932A", "-6971A", "-6973C", "C6988T", "A7037T", "G7269A", "A7375G", "T7801A", "A8011C", "G8216A", "G8476T", "G8479A", "A8922G", "C8948T"], "RT-p51": ["K356R"], "RT-p66": ["K356R"], "gp120": ["S162T", "P285R", "S360T", "I395F", "Q412E"], "gp41": ["I24M", "D305N"], "nef": ["S45I", "S46N", "I194V"], "p6": ["S3N"], "p7": ["I12T"], "rev": ["I55L"], "tat": ["N7D"], "vpu": ["A11G"]}, "labels": {"aa": "RT-p51: K356R; RT-p66: K356R; gp120: S162T, P285R, S360T, I395F, Q412E; gp41: I24M, D305N; nef: S45I, S46N, I194V; p6: S3N; p7: I12T; rev: I55L; tat: N7D; vpu: A11G"}}, "children": [{"name": "JX140648", "node_attrs": {"div": 0.14681, "accession": "JX140648", "clade_membership": {"value": "CRF04_cpx"}, "country": {"value": "GR"}, "date": {"value": 2000.0}, "Strain_name": {"value": "DE00400GR002"}, "LANL_subtype": {"value": "CRF04_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G256A", "A261G", "G378T", "A417C", "A425G", "G428A", "A431G", "T473C", "A534G", "A562C", "A599T", "A608G", "A611G", "A619G", "C623T", "G705A", "G706A", "G755A", "T788A", "G803A", "A806G", "A836G", "T861G", "G866T", "A891T", "T892G", "G893T", "G908A", "T936C", "T962G", "A968G", "T988C", "A1002G", "C1006A", "C1060A", "C1091T", "A1115G", "C1136T", "C1181T", "A1226T", "T1242G", "G1243T", "G1302A", "C1322T", "G1394T", "C1444T", "A1449G", "A1450G", "G1452A", "G1458A", "C1459A", "G1508A", "A1567G", "G1697A", "G1720T", "-1728A", "-1729T", "-1730G", "G1732A", "G1733A", "A1734G", "A1735G", "A1736G", "G1740A", "A1741C", "G1742A", "A1745C", "A1746-", "C1747-", "C1748-", "T1752C", "A1770G", "A1793C", "C1795A", "A1804G", "G1819A", "A1835G", "G1845A", "G1846A", "G1857A", "G1858A", "T1867A", "T1873C", "A1903C", "A1963G", "T2083C", "G2134A", "A2161G", "C2194A", "C2263T", "G2304A", "A2341G", "C2353T", "T2369C", "G2464A", "A2498G", "A2627T", "A2629G", "C2632T", "A2674G", "A2809G", "C2834G", "T2941C", "A2956G", "G2972A", "A2984G", "C3045T", "G3154A", "A3163G", "C3166T", "A3193G", "A3214G", "G3217A", "G3259A", "A3265G", "A3295G", "T3310C", "C3415T", "T3433G", "A3442C", "A3529G", "T3559C", "T3613C", "C3665A", "T3668C", "G3866A", "T3904C", "T4006C", "T4015C", "G4060A", "G4145A", "T4147G", "T4177C", "A4315G", "A4420G", "C4471T", "A4644G", "A4684G", "A4688G", "G4769T", "G4786A", "A4811G", "A4816G", "C4919T", "A5046G", "C5051A", "A5061G", "A5119G", "G5272A", "A5277T", "A5345G", "A5355T", "C5359G", "T5360C", "A5363G", "A5444G", "G5448T", "C5454T", "A5461G", "A5462T", "C5491T", "G5535A", "G5538A", "A5555C", "G5565A", "T5614C", "C5616T", "T5679C", "T5686C", "G5711A", "G5717A", "C5727T", "A5735G", "T5781C", "-5799G", "G5804A", "-5812G", "-5813A", "-5814G", "A5825-", "C5826-", "T5857G", "A5864G", "-5866A", "G5915A", "G5917A", "A5947C", "G5954A", "A5995T", "C6010T", "T6025A", "A6029G", "A6050G", "A6059G", "T6142A", "T6151C", "A6158G", "-6167A", "-6170G", "-6171T", "-6172A", "-6174A", "-6175T", "A6176G", "A6177T", "T6178A", "C6183G", "C6189G", "C6198G", "A6201G", "-6204T", "C6207A", "-6208A", "A6212T", "-6215A", "-6216T", "-6217G", "-6218T", "-6219A", "-6220A", "-6221G", "-6222C", "-6225C", "-6228T", "A6229G", "A6232G", "C6241T", "A6262G", "A6265G", "A6282C", "G6314A", "T6315C", "G6316A", "C6318A", "A6320C", "A6323G", "A6326G", "A6327C", "T6331C", "A6333G", "G6339C", "T6340G", "C6363G", "G6391A", "G6403A", "G6425A", "A6430G", "C6489A", "T6563C", "G6566T", "A6573G", "A6574G", "A6602T", "A6615G", "A6636G", "A6647C", "A6674T", "A6682G", "A6691G", "T6694C", "T6700C", "T6724C", "A6735G", "A6754G", "C6766T", "C6797T", "A6799C", "A6800C", "T6807C", "G6809A", "-6810C", "G6819A", "T6827C", "C6829G", "C6833A", "C6834A", "T6835C", "T6838G", "A6840G", "A6841C", "A6850T", "G6854C", "T6856A", "C6875A", "T6876A", "A6884G", "A6886C", "C6888T", "A6889G", "G6894A", "T6928C", "A6952C", "A6954G", "T6957A", "-6958T", "A6967C", "-6968A", "-6969A", "-6970T", "-6972G", "-6974A", "-6975G", "-6976C", "-6978T", "-6979T", "A6980G", "G6981A", "T6982G", "A6989G", "C6990G", "-6991C", "-6994A", "C7012T", "C7014T", "C7018G", "A7032G", "G7040A", "G7044A", "C7102A", "G7112A", "A7126G", "T7130C", "A7155C", "G7160A", "G7190A", "G7309A", "A7315G", "C7320T", "T7321G", "G7322A", "C7433T", "G7438A", "G7477A", "T7609C", "T7615C", "A7628G", "G7631A", "T7633G", "A7641C", "A7676G", "G7702T", "A7705G", "C7706A", "G7720A", "A7722T", "C7792T", "T7796A", "A7798G", "A7799C", "T7913C", "C7943A", "C7984A", "A7992G", "A7997G", "A8019G", "T8035C", "C8047T", "C8048T", "C8051A", "C8065T", "T8067G", "C8068G", "A8087G", "C8106T", "A8142G", "C8167T", "G8242A", "G8254A", "G8261A", "G8267A", "G8280A", "A8364T", "T8366C", "-8370T", "A8378G", "G8387A", "G8407A", "A8420G", "C8425T", "A8446G", "A8459G", "C8471T", "T8483C", "C8491A", "C8494A", "T8495A", "C8514T", "A8522G", "A8525G", "A8558G", "T8585C", "T8595C", "A8656T", "A8732G", "G8738A", "A8740T", "T8746A", "T8770A", "A8786T", "C8793A", "G8798A", "G8801A", "A8804G", "G8808A", "G8817A", "A8827G", "A8887T", "G8905A", "A8914T", "C8921T", "A8924G", "T8935A", "G8936A", "T8947A", "A8953G", "C8966T", "A9023C", "A9042G", "C9078T", "G9095A"], "INT": ["V31I", "A124T"], "RT-p51": ["R70K", "T135V", "I178L", "P247A", "V293I", "T297A", "A317V"], "RT-p66": ["R70K", "T135V", "I178L", "P247A", "V293I", "T297A", "A317V", "E449D", "Q524K"], "gp120": ["S1R", "N4E", "E21K", "K31N", "D34N", "A57V", "N66D", "K69E", "N102D", "T104S", "-105N", "-106V", "-107N", "N108V", "T110S", "T112V", "I137M", "K143T", "V154T", "P155Q", "I156L", "N157D", "N158A", "N160S", "N161S", "T170S", "A191T", "T212K", "A238S", "E240G", "T250S", "K254R", "A261G", "K265Q", "N274Y", "-282G", "-283I", "N294R", "Q315Y", "K316Q", "V318A", "E319T", "R322K", "K323E", "F325L", "P326-", "-328K", "K329S", "N334Q", "L341K", "T344A", "T345M", "S347N", "K361E", "M368T", "T374S", "-375I", "-376E", "-377T", "-378N", "-379G", "T387I", "K393R", "V396I", "R397N", "N416K", "I424M", "N434T", "D446N"], "gp41": ["A6V", "V7M", "N109D", "D110K", "D113A", "N125D", "L135I", "N140I", "S165T", "N166Q", "D230G", "S232G", "N239S", "F255W", "N262D", "A268V", "E280G", "E320K", "V322I", "C326Y"], "nef": ["S8C", "I10L", "R22Q", "A28V", "Q35R", "A50D", "T51K", "K105I", "E133I", "F135Y", "F143Y", "Q151K", "A156T", "G159R", "N162S", "K182M", "R188H", "Y191F", "L198Q", "F202Y", "K204R"], "p17": ["A15S", "K28Q", "T67A", "K76T", "I92M", "K95R"], "p2": ["A7V", "N9G", "A10T", "A12N"], "p24": ["S14T", "I15M", "S44A", "E45D", "M54C", "V86A", "I91V", "P92Q", "T110N", "C171V", "V191I"], "p6": ["S14I", "E19G", "S24P", "R31G", "L38F", "T39N", "K42R", "S47N"], "p7": ["K34R"], "pro": ["I13V", "G16E", "R20K", "E35D"], "rev": ["S7N", "T8N", "K14Q", "R17K", "T32E", "K50R", "Y63H", "P67F", "A68E", "Q74E", "K80R", "D94E", "P107S"], "tat": ["N23S", "K24N", "K29V", "H54Q", "Q60P", "N78R"], "vif": ["T20A", "K33R", "R67K", "K77R", "I154V", "T159A", "Q178R"], "vpr": ["E58V", "I84F"], "vpu": ["F27L", "R35K", "R37K", "Y43C", "T63K", "-69E"]}, "labels": {"aa": "INT: V31I, A124T; RT-p51: R70K, T135V, I178L, P247A, V293I, T297A, A317V; RT-p66: R70K, T135V, I178L, P247A, V293I, T297A, A317V, E449D, Q524K; gp120: S1R, N4E, E21K, K31N, D34N, A57V, N66D, K69E, N102D, T104S, -105N, -106V, -107N, N108V, T110S, T112V, I137M, K143T, V154T, P155Q, I156L, N157D, N158A, N160S, N161S, T170S, A191T, T212K, A238S, E240G, T250S, K254R, A261G, K265Q, N274Y, -282G, -283I, N294R, Q315Y, K316Q, V318A, E319T, R322K, K323E, F325L, P326-, -328K, K329S, N334Q, L341K, T344A, T345M, S347N, K361E, M368T, T374S, -375I, -376E, -377T, -378N, -379G, T387I, K393R, V396I, R397N, N416K, I424M, N434T, D446N; gp41: A6V, V7M, N109D, D110K, D113A, N125D, L135I, N140I, S165T, N166Q, D230G, S232G, N239S, F255W, N262D, A268V, E280G, E320K, V322I, C326Y; nef: S8C, I10L, R22Q, A28V, Q35R, A50D, T51K, K105I, E133I, F135Y, F143Y, Q151K, A156T, G159R, N162S, K182M, R188H, Y191F, L198Q, F202Y, K204R; p17: A15S, K28Q, T67A, K76T, I92M, K95R; p2: A7V, N9G, A10T, A12N; p24: S14T, I15M, S44A, E45D, M54C, V86A, I91V, P92Q, T110N, C171V, V191I; p6: S14I, E19G, S24P, R31G, L38F, T39N, K42R, S47N; p7: K34R; pro: I13V, G16E, R20K, E35D; rev: S7N, T8N, K14Q, R17K, T32E, K50R, Y63H, P67F, A68E, Q74E, K80R, D94E, P107S; tat: N23S, K24N, K29V, H54Q, Q60P, N78R; vif: T20A, K33R, R67K, K77R, I154V, T159A, Q178R; vpr: E58V, I84F; vpu: F27L, R35K, R37K, Y43C, T63K, -69E"}}}, {"name": "CRF04_cpx_NODE_0000003", "node_attrs": {"div": 0.11944, "clade_membership": {"value": "CRF04_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A157T", "C160A", "A171G", "C173T", "T174A", "C175A", "T201C", "A388G", "G452A", "T571A", "A697C", "A699G", "G716T", "C772G", "G776T", "A887G", "A968C", "A1101G", "A1142G", "T1172C", "G1173A", "A1265C", "T1296C", "G1493A", "A1495G", "A1580G", "A1592G", "A1715G", "G1718A", "A1719T", "C1756T", "A1841C", "C1853A", "A1927G", "T1986C", "A2023G", "T2062C", "A2203G", "A2368G", "T2383C", "A2398G", "T2499C", "A2551C", "A2612T", "C2644T", "A2707G", "A2716G", "A2989G", "T3131C", "G3169A", "G3435A", "A3481C", "C3863T", "A3868G", "C3967T", "A3989G", "A4111G", "C4181A", "A4183C", "A4546C", "G4549A", "A4677G", "G4735A", "C4754T", "G4838A", "A4880G", "G5257A", "T5356C", "C5438A", "G5538T", "C5615T", "T5618G", "A5644G", "C5663T", "A5680T", "C5707A", "T5708G", "A5720G", "A5730C", "G5739T", "A5795C", "-5799T", "-5824A", "T5851C", "-5866C", "A6030T", "A6043G", "G6107A", "T6129C", "C6140T", "A6157T", "A6159C", "C6160A", "G6165T", "A6168-", "T6169-", "A6173-", "A6179G", "G6180C", "T6181A", "A6186C", "T6199C", "T6205C", "-6208T", "A6209G", "T6211G", "A6214T", "-6221A", "-6225A", "-6228G", "A6248G", "C6305A", "A6329G", "T6361C", "A6362G", "A6395T", "G6442A", "A6471C", "C6477T", "G6576A", "A6636C", "A6668G", "A6669G", "T6700G", "C6797A", "A6800G", "G6803A", "G6806-", "T6807-", "A6812-", "A6817-", "T6849A", "A6855C", "T6860C", "T6863G", "C6864T", "G6905A", "G6935A", "T6953C", "A6989T", "-6991T", "T7009C", "C7020A", "A7028C", "C7045G", "C7079T", "A7093G", "G7152A", "G7250A", "C7313A", "T7321C", "A7420G", "A7470G", "C7597T", "T7693A", "A7701G", "A7773G", "T7774C", "A7791G", "T7921G", "A7962G", "G8130T", "C8291T", "T8292G", "A8311C", "T8351C", "-8370A", "C8386A", "C8477T", "G8508A", "A8531G", "G8534A", "C8543T", "A8573G", "T8582C", "A8584T", "C8590G", "A8688C", "C8715G", "A8717T", "A8739G", "C8741G", "A8827C", "A8909G", "A8918G"], "INT": ["P30S", "I72V", "I112M", "Q136N"], "RT-p51": ["Y346H"], "RT-p66": ["T173S", "Y346H", "S447N"], "gp120": ["E59I", "D85N", "V92A", "P96S", "L101F", "N102T", "T104I", "S109A", "N111T", "-116N", "-118T", "-119V", "-120I", "-122E", "-123G", "E125-", "N132D", "L151I", "N159S", "N160T", "T170A", "T181S", "N206T", "S208L", "G241E", "N272G", "Q315K", "K316E", "V317I", "V318S", "H324L", "I332K", "N334A", "S336P", "S337V", "G351R", "W367H", "T380-", "P389Q", "I392L", "P409S", "S433N", "N436E", "V466I"], "gp41": ["L4I", "K56R", "D133G", "N157S", "N163S", "N166K", "F206L", "Q213T", "E220G", "R276I", "L330C"], "nef": ["A15E", "A56T", "Y81F", "A83G", "N116H", "Q125D", "N162T"], "p17": ["K18R", "P66S", "F79Y", "A83T", "D121A", "T122A", "N124G", "K127N"], "p24": ["E79D", "I124V", "V148I"], "p6": ["S14C", "M17R"], "p7": ["K10R"], "pro": ["I15L", "L19I", "L63P"], "tat": ["A21D", "K85E"], "vif": ["I31V", "R50K", "D61E"], "vpr": ["I84T", "R85P"], "vpu": ["S2L", "P3F", "L4W", "I13V", "A19V", "I25L", "L34R", "K38R", "R41S", "K44N", "E66G", "-69N"]}, "labels": {"aa": "INT: P30S, I72V, I112M, Q136N; RT-p51: Y346H; RT-p66: T173S, Y346H, S447N; gp120: E59I, D85N, V92A, P96S, L101F, N102T, T104I, S109A, N111T, -116N, -118T, -119V, -120I, -122E, -123G, E125-, N132D, L151I, N159S, N160T, T170A, T181S, N206T, S208L, G241E, N272G, Q315K, K316E, V317I, V318S, H324L, I332K, N334A, S336P, S337V, G351R, W367H, T380-, P389Q, I392L, P409S, S433N, N436E, V466I; gp41: L4I, K56R, D133G, N157S, N163S, N166K, F206L, Q213T, E220G, R276I, L330C; nef: A15E, A56T, Y81F, A83G, N116H, Q125D, N162T; p17: K18R, P66S, F79Y, A83T, D121A, T122A, N124G, K127N; p24: E79D, I124V, V148I; p6: S14C, M17R; p7: K10R; pro: I15L, L19I, L63P; tat: A21D, K85E; vif: I31V, R50K, D61E; vpr: I84T, R85P; vpu: S2L, P3F, L4W, I13V, A19V, I25L, L34R, K38R, R41S, K44N, E66G, -69N"}}, "children": [{"name": "AF049337", "node_attrs": {"div": 0.1353, "accession": "AF049337", "clade_membership": {"value": "CRF04_cpx"}, "country": {"value": "CY"}, "date": {"value": 1994.0}, "Strain_name": {"value": "94CY032_3"}, "LANL_subtype": {"value": "CRF04_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T165-", "C179-", "A180-", "G181-", "T182-", "G183-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "G196-", "A215-", "A216-", "T217-", "C531T", "A562G", "T579A", "G582A", "A618C", "A661G", "G803A", "C1040T", "T1162C", "A1274G", "T1481A", "G1673A", "T1948C", "T2017C", "A2075C", "A2215C", "A2230C", "G2304A", "C2613T", "T2832C", "C2834G", "T2860C", "C3100T", "A3190T", "A3675G", "A3961G", "C3995A", "A4012G", "T4024C", "A4118G", "T4126C", "C4471A", "A4591C", "G4607A", "A4661G", "G4700A", "A4811G", "A4815C", "A4859C", "T5018C", "T5027C", "A5030G", "A5096G", "T5263C", "T5478C", "G5535A", "C5552T", "T5562C", "A5567G", "T5568C", "C5579T", "C5612T", "T5941A", "T5956G", "A6020G", "T6024C", "T6046C", "A6065G", "-6204G", "-6222A", "A6268G", "A6330G", "A6333G", "G6336A", "T6340G", "G6345T", "A6507G", "A6571G", "G6693A", "A6701C", "T6702C", "G6706A", "G6708T", "G6710-", "G6711-", "A6712-", "C6713A", "A6714C", "A6716T", "C6717G", "A6718G", "G6720A", "G6721T", "T6722G", "A6723C", "T6724A", "G6725A", "A6728G", "C6729G", "A6730T", "G6732A", "T6733A", "A6735T", "A6778T", "T6793C", "A6801T", "-6806A", "-6807G", "-6810A", "-6812G", "-6817G", "G6819A", "G6821A", "A6822G", "A6825T", "T6895C", "G6906A", "A6935C", "A6936C", "G6955C", "-6958G", "A6959C", "T6961A", "G6963A", "A6965G", "C6966G", "A6967T", "-6968A", "-6969C", "-6970A", "-6972A", "-6974A", "-6975T", "-6976T", "-6978C", "-6979A", "A6986G", "-7000A", "-7001A", "-7002A", "-7003T", "-7004T", "-7005C", "-7006A", "A7063G", "A7089C", "A7149C", "T7162G", "G7166-", "A7167-", "G7168-", "C7170T", "C7266A", "C7301T", "A7318G", "G7322A", "T7408C", "C7433T", "G7594A", "C7655T", "G7717A", "T7796A", "G7942A", "A7947G", "C7950T", "C8165T", "C8213T"], "INT": ["L74M", "T115A", "D232E", "D278N"], "RT-p51": ["E40D", "R70K", "T173F", "L246P", "P247A"], "RT-p66": ["E40D", "R70K", "S173F", "L246P", "P247A", "Q527R"], "gp120": ["D29E", "D34E", "I56V", "N71D", "-117G", "N161E", "T162E", "R164M", "Q218R", "V279-", "R280-", "I281-", "G284-", "R285-", "G286-", "Q287-", "T288-", "W289-", "Y290V", "A291H", "T292I", "N294P", "K308N", "E316V", "K320E", "R322K", "K323R", "R351K", "K361P", "N369Q", "N372D", "-375N", "-376S", "E412A", "N420D", "N432T", "E438-", "T439I", "T471N", "R483*"], "gp41": ["V7M", "S165T", "E215G", "P216L", "L288F", "L304F"], "p17": ["K76R", "L82I", "K95Q", "N109S"], "p24": ["M144T"], "p6": ["P25L"], "p7": ["N5K"], "pro": ["I93L"], "rev": ["S7N", "T8I", "L13F", "V16A", "I18A", "P106L"], "tat": ["P59L", "D64G", "P68L", "N80D", "P81S"], "vif": ["E2A", "W38*", "K77Q"]}, "labels": {"aa": "INT: L74M, T115A, D232E, D278N; RT-p51: E40D, R70K, T173F, L246P, P247A; RT-p66: E40D, R70K, S173F, L246P, P247A, Q527R; gp120: D29E, D34E, I56V, N71D, -117G, N161E, T162E, R164M, Q218R, V279-, R280-, I281-, G284-, R285-, G286-, Q287-, T288-, W289-, Y290V, A291H, T292I, N294P, K308N, E316V, K320E, R322K, K323R, R351K, K361P, N369Q, N372D, -375N, -376S, E412A, N420D, N432T, E438-, T439I, T471N, R483*; gp41: V7M, S165T, E215G, P216L, L288F, L304F; p17: K76R, L82I, K95Q, N109S; p24: M144T; p6: P25L; p7: N5K; pro: I93L; rev: S7N, T8I, L13F, V16A, I18A, P106L; tat: P59L, D64G, P68L, N80D, P81S; vif: E2A, W38*, K77Q"}}}, {"name": "FJ388917", "node_attrs": {"div": 0.1413, "accession": "FJ388917", "clade_membership": {"value": "CRF04_cpx"}, "country": {"value": "CY"}, "date": {"value": 2005.0}, "Strain_name": {"value": "CY081"}, "LANL_subtype": {"value": "CRF04_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C435T", "C510G", "G518A", "C531A", "C583T", "T614G", "A645C", "A711G", "A839G", "G866A", "A1115G", "A1199G", "C1304T", "G1313A", "A1474G", "A1476G", "G1508A", "C1517T", "G1691A", "A1724G", "A1731G", "A1781G", "T1796C", "G1861A", "A2002G", "G2177A", "C2211T", "A2212G", "G2294A", "A2344C", "C2346G", "A2352T", "C2378G", "G2380A", "T2394C", "A2396G", "A2404C", "A2406T", "G2417T", "G2422A", "C2450T", "C2452T", "T2466C", "C2478T", "C2488T", "A2498T", "A2512T", "A2563C", "A2627C", "A2629G", "A2645G", "C2708G", "G2725A", "A2734G", "A2738T", "C2739T", "C2740T", "A2750G", "A2920G", "G3094A", "C3128T", "C3129T", "G3142A", "A3241C", "C3359T", "G3491A", "G3523A", "T3542C", "A3654T", "A3697T", "C3857T", "T3977C", "C4072T", "C4129T", "G4150C", "A4255G", "G4306A", "A4333G", "A4598G", "T4724C", "G4774A", "C5051T", "G5128A", "G5236A", "C5248A", "A5277T", "C5303T", "C5412T", "T5538C", "C5612A", "A5613T", "C5616T", "C5651T", "T5658C", "T5688C", "A5699G", "G5706A", "G5717A", "C5727A", "T5827C", "C5834T", "C5911T", "G5948C", "T5964C", "A5981G", "A6020T", "C6134T", "C6180T", "-6204C", "-6222G", "A6234G", "T6250A", "T6252C", "A6263T", "A6272C", "A6282C", "T6294G", "A6327G", "G6339A", "G6345A", "C6364T", "T6433C", "A6463G", "C6496T", "T6541C", "A6569G", "C6570A", "G6572-", "A6573-", "A6574-", "G6575C", "G6578T", "A6580G", "A6647C", "A6682G", "A6715C", "A6751C", "A6753G", "G6773A", "A6778G", "T6781C", "T6808-", "G6809-", "A6811-", "A6813-", "A6814-", "T6815-", "T6816-", "A6820T", "C6826A", "C6829G", "-6830A", "-6831G", "-6832A", "C6833A", "C6834A", "G6871A", "C6874T", "A6954T", "T6957A", "-6958A", "A6962G", "-6968T", "-6969T", "-6970C", "-6972T", "C6973T", "-6974C", "-6975C", "-6976G", "A6977-", "A6980G", "C6993A", "-6994T", "-6995T", "-6996C", "-6997A", "C7008A", "G7076T", "C7084A", "T7087G", "G7095A", "C7096A", "A7100T", "G7112A", "A7124C", "G7132A", "A7154G", "T7156C", "C7158A", "A7161G", "-7163A", "-7164C", "-7165T", "A7239G", "A7268G", "G7270A", "A7282G", "T7338C", "A7373T", "C7411T", "G7477A", "A7533G", "A7641G", "A7800G", "G7846A", "A7969C", "A8019G", "C8164T", "A8348G", "G8349A", "G8424A", "A8458G"], "INT": ["M275V"], "RT-p51": ["E28K", "T39M", "D67N", "R83S", "T84S", "D86V", "P95A", "L100S", "K101E", "K103N", "K104I", "V108L", "P119S", "F124S", "T128I", "T135S", "T173S", "I178L", "M184V", "L205V", "T215F", "K219E", "P345L"], "RT-p66": ["E28K", "T39M", "D67N", "R83S", "T84S", "D86V", "P95A", "L100S", "K101E", "K103N", "K104I", "V108L", "P119S", "F124S", "T128I", "T135S", "I178L", "M184V", "L205V", "T215F", "K219E", "P345L", "V466I", "Y483H", "Q520L"], "gp120": ["A32P", "V37A", "T43A", "I56L", "A57V", "A109V", "-117A", "K121R", "K127R", "D132E", "I133T", "I137L", "K140Q", "K143T", "L147R", "N158V", "S159R", "T160V", "N161P", "R164K", "T239E", "E240Q", "E241L", "V243-", "K265Q", "-282G", "-283I", "Q287H", "N294K", "R299S", "Q300R", "G307R", "K320Q", "K323N", "H367L", "M368K", "S370G", "N372F", "S373I", "T374P", "-375G", "-376T", "-377N", "-378S", "-379N", "-380S", "-381N", "T385-", "A408S", "I411M", "S414K", "N416Y", "I424L", "N434G", "T435N", "E436G", "-437T", "K462R", "K472E"], "gp41": ["L12S", "M24L", "K77R", "D113G", "K166R", "N239S"], "nef": ["G3S", "A28T", "K39R"], "p17": ["Q59E", "M61I", "S66T", "T83V", "D93E", "I104L", "S126G"], "p6": ["R17-", "K18G", "E19K", "T21E", "S23T", "P25S", "-26L"], "p7": ["K3R", "S4G"], "rev": ["T32A", "P106S"], "tat": ["N78S", "Q87P"], "vif": ["R63K", "R181K"], "vpr": ["N48K", "E58V"], "vpu": ["L2Y", "A15V", "K31R", "R37K", "D40E", "F70L", "-72L", "P76-"]}, "labels": {"aa": "INT: M275V; RT-p51: E28K, T39M, D67N, R83S, T84S, D86V, P95A, L100S, K101E, K103N, K104I, V108L, P119S, F124S, T128I, T135S, T173S, I178L, M184V, L205V, T215F, K219E, P345L; RT-p66: E28K, T39M, D67N, R83S, T84S, D86V, P95A, L100S, K101E, K103N, K104I, V108L, P119S, F124S, T128I, T135S, I178L, M184V, L205V, T215F, K219E, P345L, V466I, Y483H, Q520L; gp120: A32P, V37A, T43A, I56L, A57V, A109V, -117A, K121R, K127R, D132E, I133T, I137L, K140Q, K143T, L147R, N158V, S159R, T160V, N161P, R164K, T239E, E240Q, E241L, V243-, K265Q, -282G, -283I, Q287H, N294K, R299S, Q300R, G307R, K320Q, K323N, H367L, M368K, S370G, N372F, S373I, T374P, -375G, -376T, -377N, -378S, -379N, -380S, -381N, T385-, A408S, I411M, S414K, N416Y, I424L, N434G, T435N, E436G, -437T, K462R, K472E; gp41: L12S, M24L, K77R, D113G, K166R, N239S; nef: G3S, A28T, K39R; p17: Q59E, M61I, S66T, T83V, D93E, I104L, S126G; p6: R17-, K18G, E19K, T21E, S23T, P25S, -26L; p7: K3R, S4G; rev: T32A, P106S; tat: N78S, Q87P; vif: R63K, R181K; vpr: N48K, E58V; vpu: L2Y, A15V, K31R, R37K, D40E, F70L, -72L, P76-"}}}]}]}]}, {"name": "results/subtype_trees/CRF18_cpx.nwk", "node_attrs": {"div": 0.07927999999999999, "clade_membership": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A215G", "A216T", "A220G", "A301G", "-304A", "G428A", "T473C", "A563G", "C587T", "T635C", "T734C", "G762A", "G771T", "A785G", "T808C", "C827T", "C872T", "A899G", "A1124G", "C1136A", "A1226G", "A1259G", "A1415C", "A1418G", "C1439T", "C1447A", "A1449C", "A1454-", "-1458A", "-1459A", "T1484C", "C1517T", "A1586G", "T1682C", "G1687A", "T1828C", "A1857T", "G1858A", "T1864C", "T1873C", "T2269C", "C2335T", "C2353T", "A2374G", "A2386T", "A2389T", "C2464T", "A2498G", "G2656A", "G2693A", "A2818C", "G2842A", "A3031T", "A3034T", "A3097T", "T3139C", "G3142A", "C3175T", "A3200G", "C3201T", "A3218G", "A3220G", "T3253C", "A3277G", "G3316A", "A3334G", "C3346T", "C3357A", "C3376T", "C3449T", "T3469C", "T3550A", "G3556A", "C3589T", "A3625T", "T3644A", "C3665G", "A3756G", "T4117C", "T4153A", "C4162A", "G4175A", "C4180T", "C4181A", "A4182C", "G4186A", "G4264A", "C4288T", "T4679C", "A4697T", "A4763G", "A4784G", "T4868C", "C4919T", "T4925C", "C5091T", "G5099A", "A5305G", "A5336C", "C5351T", "A5355G", "T5357G", "G5463A", "A5480C", "G5482C", "T5484A", "C5511T", "G5546C", "C5554T", "A5587G", "A5601-", "A5603T", "C5627T", "G5629A", "C5630G", "A5631C", "G5700A", "G5712A", "C5727T", "A5751C", "-5799T", "G5802C", "A5805G", "A5806C", "T5828A", "G5830A", "T5836G", "G5839T", "T5851C", "C5884A", "A5896G", "G5954A", "G5963A", "T6024C", "C6052T", "G6088A", "T6091C", "T6100C", "-6174C", "C6183A", "A6197-", "A6229-", "A6281C", "G6303A", "A6327-", "A6338G", "A6362G", "C6363T", "G6403A", "T6457C", "G6463C", "C6469T", "G6575A", "A6583G", "T6586C", "T6655C", "C6673T", "T6676C", "-6689A", "G6693A", "G6809A", "A6812C", "A6818G", "T6827C", "T6829G", "-6833A", "-6834A", "-6835C", "A6840G", "A6841C", "T6856A", "G6871A", "C6875A", "G6894C", "C6925T", "T6932A", "G6935A", "-6952C", "C7012T", "C7018G", "A7138T", "T7141C", "G7143T", "G7146T", "A7154-", "A7155C", "T7159-", "A7167T", "G7309T", "G7324C", "G7513A", "A7589G", "A7590C", "T7591A", "C7597T", "C7655T", "G7765A", "G7777A", "T7825C", "A7947G", "A8006G", "T8008G", "C8189A", "C8221A", "A8222G", "C8223T", "G8242C", "T8279A", "C8293T", "A8311C", "T8323C", "T8337A", "A8342C", "T8375A", "A8390T", "C8406A", "G8424A", "C8471A", "-8490A", "C8521-", "A8522-", "C8523-", "T8568C", "T8600C", "T8687C", "A8717G", "C8720T", "G8753A", "C8756A", "G8795T", "C8810T", "A8816G", "G8864T", "A8870G", "T8904A", "A8909G", "C8927A", "C8928A"], "INT": ["Q136T"], "RT-p51": ["I135V", "A200T", "Q334H", "T369V", "I375V", "P421H"], "RT-p66": ["I135V", "A200T", "Q334H", "T369V", "I375V", "P421H", "L517I", "Q524E"], "gp120": ["S3T", "-107T", "E125-", "I126-", "N157-", "N158-", "N160-", "N161-", "T170V", "K203N", "N204T", "E241K", "I243M", "N261K", "G307R", "K316E", "K319T", "K320Q", "R322G", "F325L", "K329S", "N334K", "L341I", "S347T", "S360T", "N369-", "Q412R", "R428S", "G430F", "G431V", "-433K", "N434-", "E438-", "T439-"], "gp41": ["N96A", "E215G", "D230G", "D232G", "I235V", "N239S", "L296I", "T307V", "E313N", "C326G", "L340A", "L345Q"], "nef": ["E28K", "D54A", "K104Q", "R151S", "C163S", "E174D", "S188T", "L198Q"], "p17": ["I107L"], "p2": ["T8Q"], "p24": ["I15M", "V26A", "L83I"], "p6": ["S3N", "P23-", "D32E"], "pro": ["K20I"], "rev": ["H53R", "S54E", "H82N", "T114D"], "tat": ["K24Q", "V36L", "Q60Y", "P68L", "K71E", "N80D"], "vif": ["V170A"], "vpr": ["Q77H", "I84V"], "vpu": ["E5-", "A7V", "A8S", "E48D", "E63K", "L67-", "-74H", "-75N", "W77G", "V78Y"]}, "labels": {"aa": "INT: Q136T; RT-p51: I135V, A200T, Q334H, T369V, I375V, P421H; RT-p66: I135V, A200T, Q334H, T369V, I375V, P421H, L517I, Q524E; gp120: S3T, -107T, E125-, I126-, N157-, N158-, N160-, N161-, T170V, K203N, N204T, E241K, I243M, N261K, G307R, K316E, K319T, K320Q, R322G, F325L, K329S, N334K, L341I, S347T, S360T, N369-, Q412R, R428S, G430F, G431V, -433K, N434-, E438-, T439-; gp41: N96A, E215G, D230G, D232G, I235V, N239S, L296I, T307V, E313N, C326G, L340A, L345Q; nef: E28K, D54A, K104Q, R151S, C163S, E174D, S188T, L198Q; p17: I107L; p2: T8Q; p24: I15M, V26A, L83I; p6: S3N, P23-, D32E; pro: K20I; rev: H53R, S54E, H82N, T114D; tat: K24Q, V36L, Q60Y, P68L, K71E, N80D; vif: V170A; vpr: Q77H, I84V; vpu: E5-, A7V, A8S, E48D, E63K, L67-, -74H, -75N, W77G, V78Y", "clade": "CRF18_cpx"}}, "children": [{"name": "MF109378", "node_attrs": {"div": 0.13895999999999997, "accession": "MF109378", "clade_membership": {"value": "CRF18_cpx"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "13592_1_35.4"}, "LANL_subtype": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T377G", "C379A", "A380G", "G407A", "G413T", "A418G", "C426A", "A540G", "A541G", "T549A", "G552A", "C558A", "A571T", "A576G", "C583T", "C590T", "T602C", "A620G", "T641C", "A644G", "A645G", "A654T", "A659G", "T662G", "A678G", "A697G", "G706A", "G712A", "C713T", "A715-", "G716-", "T718C", "A730T", "A735G", "T763C", "C765T", "C780G", "G791A", "A809C", "A820G", "C823G", "A873G", "A914G", "A978G", "A980G", "A1002G", "C1005G", "A1022G", "C1040T", "A1073G", "A1074G", "A1089G", "G1090C", "C1098A", "G1109A", "G1192A", "T1253A", "G1268A", "G1271A", "A1278G", "A1279C", "T1280C", "T1322C", "T1334C", "C1342G", "C1350G", "G1394A", "T1421C", "C1449-", "A1450-", "T1451-", "-1454A", "-1455G", "-1456C", "-1457T", "A1495G", "G1498A", "G1562A", "A1565G", "A1642G", "G1664A", "A1670G", "G1673A", "C1682-", "C1683-", "A1684-", "G1685-", "T1722C", "T1728A", "A1733G", "C1745-", "-1747C", "-1748T", "C1751T", "T1752C", "C1754T", "C1756-", "A1759C", "C1767G", "C1768T", "A1776-", "A1777-", "C1782A", "A1784G", "T1791C", "G1829-", "T1830-", "C1831-", "A1879G", "T1895C", "A1907G", "G1942A", "A1988T", "C2149A", "G2156A", "A2203G", "C2281T", "T2369C", "A2419G", "T2458C", "C2584T", "A2612G", "A2627C", "A2629G", "C2644T", "G2665A", "T2689C", "A2707G", "G2714A", "C2720T", "G2725A", "A2727C", "T2779G", "C2822T", "C2828A", "A2839C", "G2847A", "G2914A", "A2918C", "A2919G", "G2921A", "C2942A", "G2951A", "C2953T", "C2968A", "G2998A", "G3004A", "C3013T", "A3046G", "C3055T", "A3064G", "A3079G", "C3095A", "A3193G", "G3221A", "C3223T", "C3232T", "G3236A", "G3264A", "A3307T", "T3308C", "A3370G", "G3391A", "G3398C", "G3431T", "T3445C", "A3457G", "T3472A", "C3475T", "C3500A", "C3504A", "A3543T", "T3551C", "T3566C", "A3571G", "A3574G", "A3592T", "A3607C", "C3653A", "A3655C", "G3667A", "G3679A", "A3684G", "G3737A", "G3769A", "G3772A", "C3826T", "G3866A", "A3877G", "G3880A", "T3904C", "G3916A", "A3973C", "A3989G", "A4063G", "T4074A", "G4092C", "T4177C", "G4244C", "A4246G", "A4253C", "G4388T", "A4391T", "A4397T", "A4407G", "A4455T", "A4475G", "A4525G", "A4552G", "G4553A", "A4558T", "G4573A", "T4579C", "G4642A", "A4643C", "C4652A", "C4665T", "T4674C", "G4695A", "G4696A", "A4717T", "G4737A", "C4761A", "G4763-", "G4770A", "C4771G", "A4781G", "A4790C", "G4797A", "G4798A", "C4803A", "A4820C", "T4835A", "A4871G", "A4911T", "G4923A", "A4937C", "A4951G", "A4956T", "T4976C", "T4991C", "A4993G", "T5006A", "A5007C", "T5027C", "C5034A", "C5038T", "T5047C", "A5049C", "C5051T", "A5055G", "G5094A", "G5128A", "A5134G", "C5162T", "G5176A", "A5186G", "A5187T", "G5226A", "A5235T", "A5268C", "G5276C", "C5306T", "A5352G", "T5354G", "G5382T", "C5397T", "A5398C", "C5412T", "G5415C", "C5445T", "G5448A", "T5467A", "T5475C", "A5481G", "T5491C", "A5547G", "G5548A", "G5557A", "G5558A", "A5574G", "A5576C", "C5579T", "A5581G", "T5582C", "T5597A", "A5611-", "T5612-", "A5613-", "G5626T", "A5644G", "A5656G", "C5663T", "T5684C", "T5707G", "A5716C", "A5721G", "T5731C", "T5736A", "G5741A", "A5745C", "G5775T", "A5788T", "C5789T", "-5791T", "G5794A", "C5802T", "A5804G", "C5806T", "G5808T", "A5825-", "C5826-", "T5829C", "G5858A", "T5860C", "C5862-", "A5863-", "G5864-", "A5865-", "G5915A", "C5924T", "T5956C", "A6001C", "A6009G", "A6020T", "C6024A", "C6026T", "C6145T", "T6155C", "C6160T", "C6165G", "-6167G", "T6169-", "-6172G", "C6174T", "-6175A", "A6177T", "-6180A", "T6181G", "T6184C", "A6186G", "G6195A", "T6199-", "-6218G", "-6219A", "-6220C", "-6221A", "-6222A", "-6223A", "G6224-", "G6227-", "A6234G", "A6235C", "A6253G", "C6256T", "G6274A", "A6276C", "G6277A", "C6289T", "A6304G", "C6317A", "C6318A", "A6323-", "A6324-", "T6325-", "A6326-", "T6328-", "A6329-", "A6330-", "T6331-", "A6332-", "A6333-", "T6334-", "A6335-", "G6336-", "T6337-", "G6338-", "G6339-", "T6340-", "A6352C", "T6373C", "T6436C", "C6489G", "A6490T", "C6499T", "G6526A", "G6533A", "A6538C", "A6544G", "C6563T", "A6575C", "A6602T", "G6605A", "C6607A", "A6609G", "A6639T", "G6640T", "A6669G", "-6697G", "A6703-", "C6729T", "A6730G", "A6751G", "G6773A", "C6790T", "A6791G", "T6793C", "C6797A", "A6800G", "G6802T", "C6807T", "A6814G", "G6821A", "C6826A", "A6837T", "C6841T", "T6853C", "A6856-", "C6857-", "C6858-", "A6881G", "A6884G", "A6886C", "C6894T", "T6895G", "G6905A", "G6948T", "C6952A", "T6953-", "G6954-", "G6955-", "A6992-", "A7010-", "T7011-", "T7012-", "A7013-", "C7014-", "A7015-", "C7045A", "G7058A", "T7059C", "C7087T", "G7088A", "A7089G", "A7102C", "T7107A", "A7108T", "A7149T", "T7150C", "A7152C", "T7153C", "C7155-", "T7156-", "A7157-", "C7158-", "G7160-", "A7161-", "G7166-", "T7167-", "G7168-", "A7169-", "C7170-", "C7171-", "G7197A", "G7289C", "G7307A", "A7315G", "G7322T", "G7343A", "G7366A", "T7406A", "G7440T", "C7463A", "G7465A", "A7470G", "G7477A", "C7486T", "G7508C", "C7547T", "C7582T", "G7589T", "T7604G", "A7616C", "T7618C", "C7651T", "G7657A", "A7669G", "C7678T", "C7688A", "A7689G", "A7690C", "A7700C", "G7717A", "G7720A", "A7721G", "A7722T", "A7743T", "G7753A", "T7774C", "A7782G", "T7796A", "T7801G", "G7862A", "A7903C", "T7930C", "A7931T", "A7936G", "A7941C", "G7942A", "C7951A", "C8009A", "A8032G", "C8033A", "C8047T", "C8051A", "G8055A", "C8063A", "C8065T", "T8094C", "C8103T", "G8134A", "G8141-", "A8142-", "G8143-", "G8144-", "C8145-", "C8146-", "C8147-", "T8148-", "C8149-", "A8150-", "A8151-", "A8152-", "T8153-", "A8154-", "T8155-", "C8156-", "T8157-", "G8158-", "T8159-", "G8160-", "G8161-", "T8164C", "C8168T", "T8205C", "A8208G", "A8224G", "A8241G", "G8255C", "G8267C", "G8276C", "C8277T", "C8291-", "T8292-", "T8293-", "A8294-", "A8295-", "C8296-", "A8297-", "T8298-", "A8299-", "C8300-", "C8301-", "T8302-", "A8303-", "G8304-", "A8305-", "A8306-", "G8307-", "A8308-", "A8309-", "T8310-", "C8311-", "A8312-", "G8313-", "A8314-", "C8315-", "C8320G", "C8323G", "G8324A", "A8326C", "G8328A", "G8330C", "C8331T", "T8333-", "G8349A", "A8399G", "A8400C", "A8409-", "C8410-", "T8411-", "C8412-", "C8413-", "T8414-", "C8415-", "C8416-", "A8424T", "A8425C", "T8440A", "A8447G", "T8451C", "C8460T", "A8469G", "T8470C", "A8472G", "C8480T", "G8487C", "C8500A", "T8501G", "G8502A", "T8505-", "G8506-", "T8507-", "G8508-", "C8509-", "C8510-", "T8511-", "G8512-", "G8513-", "C8514-", "T8515-", "G8516-", "G8517-", "A8518-", "A8519-", "G8520-", "A8524-", "A8525-", "G8528A", "G8590C", "C8606T", "A8663G", "C8669T", "G8678A", "C8690T", "T8703A", "T8711C", "A8718T", "A8719G", "C8741T", "C8751T", "A8762C", "T8770A", "A8793G", "A8794T", "C8809A", "T8810G", "T8813C", "A8815C", "A8846G", "T8903A", "C8907T", "G8914T", "G8917C", "T8923A", "T8946-", "T8947-", "C8948-", "A8950T", "A8952T", "A8954T", "G8955A"], "INT": ["V31I", "I72V", "F100Y", "G106A", "V112I", "E157Q", "K160Q", "A205S", "T206S", "I208L", "K211R", "Y227F", "I234V", "V260I"], "RT-p51": ["V21I", "T173A", "I178L", "E207K", "K211T", "P243S", "Q245K", "E248D", "S251N", "K275R", "V276I", "L283I", "A286T", "D291E", "E312D", "H334N", "A376T", "V381I", "R390K", "E404D", "Y405H", "V435L"], "RT-p66": ["V21I", "T173A", "I178L", "E207K", "K211T", "P243S", "Q245K", "E248D", "S251N", "K275R", "V276I", "L283I", "A286T", "D291E", "E312D", "H334N", "A376T", "V381I", "R390K", "E404D", "Y405H", "V435L", "A446S", "L469I", "T470N", "H483L", "S491P", "Q520N", "K530R", "V548I"], "gp120": ["A2T", "T3N", "D4-", "N5-", "D21N", "N52S", "I56L", "T104S", "-105E", "-106I", "T107K", "T112N", "N113D", "S114K", "T115I", "-116S", "K127-", "I133M", "K141T", "K143Q", "P155K", "N159-", "S162-", "T204K", "T212S", "V227I", "K241Q", "T250S", "D251K", "N252S", "K262I", "N272S", "I281M", "T292M", "T313A", "Q315K", "E316D", "H324Q", "-328I", "P335-", "I343V", "T344A", "T347M", "G351R", "S365-", "T366-", "W367-", "T385-", "V402T", "F430V", "N432I", "K433T", "T435-", "R448K", "K472R", "K474R"], "gp41": ["V2I", "V7F", "A14T", "S35T", "R46M", "L54I", "K56R", "V69L", "A96S", "S101A", "N105H", "Q129S", "N133Q", "N140V", "Q147L", "N160S", "S165T", "N166K", "V187I", "I210F", "Q213P", "L244I", "L254I", "I264T", "A267V", "E280-", "A281-", "L282-", "K283-", "Y284-", "L285-", "W286-", "I301T", "N302S", "N313G", "V318L", "V322L", "A325L", "G326S", "L330-", "N331-", "I332-", "P333-", "R334-", "R335-", "I336-", "R337-", "Q338-"], "nef": ["G3S", "I20L", "T23-", "P24-", "P25-"], "p1": ["K4R"], "p17": ["D14E", "A15E", "K26N", "K28R", "L31I", "K69G", "S72T", "E73K", "L75I", "Y79F", "T81A", "A83V", "I104V", "N109K", "T115A", "D121G", "S126N", "Q127A", "V128-", "Y132F"], "p2": ["N9-"], "p24": ["I2V", "V11T", "H12Y", "P17A", "K30R", "A31G", "T48A", "I83V", "I91V", "P92A", "I115V", "S120A", "P123T", "R154K", "N183A", "S200T", "A204G"], "p6": ["Q2-"], "p7": ["K10R", "R11K"], "pro": ["V11-", "N37D", "I64L"], "rev": ["Q11R", "A15T", "K20R", "I21L", "Y23H", "Y28L", "K30E", "T62D", "P67S", "A68E", "P72H", "L73F", "G96R", "G98-", "G99-", "P100-", "Q101-", "V102-", "S103-", "V104-", "S106P", "S107F"], "tat": ["E2D", "I8L", "Q13H", "C31S", "Q35P", "A58T", "G61N", "D67A", "I69A", "L74S", "Q76R", "N78H", "P81Q", "Q87*"], "vif": ["R19N", "N22K", "H27Y", "Y30H", "G37N", "Y44F", "V51I"], "vpr": ["N28V", "G41D", "Q44L", "E55A", "E58Q", "I83V", "A93S"], "vpu": ["P3L", "L4Q", "V7L", "I13V", "I17V", "A19V", "V26A", "L34V", "K35R", "K37Q", "R45K", "E56D", "E66-", "-72G", "-73F"]}, "labels": {"aa": "INT: V31I, I72V, F100Y, G106A, V112I, E157Q, K160Q, A205S, T206S, I208L, K211R, Y227F, I234V, V260I; RT-p51: V21I, T173A, I178L, E207K, K211T, P243S, Q245K, E248D, S251N, K275R, V276I, L283I, A286T, D291E, E312D, H334N, A376T, V381I, R390K, E404D, Y405H, V435L; RT-p66: V21I, T173A, I178L, E207K, K211T, P243S, Q245K, E248D, S251N, K275R, V276I, L283I, A286T, D291E, E312D, H334N, A376T, V381I, R390K, E404D, Y405H, V435L, A446S, L469I, T470N, H483L, S491P, Q520N, K530R, V548I; gp120: A2T, T3N, D4-, N5-, D21N, N52S, I56L, T104S, -105E, -106I, T107K, T112N, N113D, S114K, T115I, -116S, K127-, I133M, K141T, K143Q, P155K, N159-, S162-, T204K, T212S, V227I, K241Q, T250S, D251K, N252S, K262I, N272S, I281M, T292M, T313A, Q315K, E316D, H324Q, -328I, P335-, I343V, T344A, T347M, G351R, S365-, T366-, W367-, T385-, V402T, F430V, N432I, K433T, T435-, R448K, K472R, K474R; gp41: V2I, V7F, A14T, S35T, R46M, L54I, K56R, V69L, A96S, S101A, N105H, Q129S, N133Q, N140V, Q147L, N160S, S165T, N166K, V187I, I210F, Q213P, L244I, L254I, I264T, A267V, E280-, A281-, L282-, K283-, Y284-, L285-, W286-, I301T, N302S, N313G, V318L, V322L, A325L, G326S, L330-, N331-, I332-, P333-, R334-, R335-, I336-, R337-, Q338-; nef: G3S, I20L, T23-, P24-, P25-; p1: K4R; p17: D14E, A15E, K26N, K28R, L31I, K69G, S72T, E73K, L75I, Y79F, T81A, A83V, I104V, N109K, T115A, D121G, S126N, Q127A, V128-, Y132F; p2: N9-; p24: I2V, V11T, H12Y, P17A, K30R, A31G, T48A, I83V, I91V, P92A, I115V, S120A, P123T, R154K, N183A, S200T, A204G; p6: Q2-; p7: K10R, R11K; pro: V11-, N37D, I64L; rev: Q11R, A15T, K20R, I21L, Y23H, Y28L, K30E, T62D, P67S, A68E, P72H, L73F, G96R, G98-, G99-, P100-, Q101-, V102-, S103-, V104-, S106P, S107F; tat: E2D, I8L, Q13H, C31S, Q35P, A58T, G61N, D67A, I69A, L74S, Q76R, N78H, P81Q, Q87*; vif: R19N, N22K, H27Y, Y30H, G37N, Y44F, V51I; vpr: N28V, G41D, Q44L, E55A, E58Q, I83V, A93S; vpu: P3L, L4Q, V7L, I13V, I17V, A19V, V26A, L34V, K35R, K37Q, R45K, E56D, E66-, -72G, -73F"}}}, {"name": "CRF18_cpx_NODE_0000001", "node_attrs": {"div": 0.08150999999999999, "clade_membership": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T992A", "C1453-", "A1715G", "-1775A", "G1912A", "A2185G", "A3071G", "A3208G", "A3454G", "A3583G", "G4268A", "C4412T", "T4742C", "A4865G", "A5665G", "G5711A", "-5824A", "A5846C", "A5848G", "A5938T", "G6458A", "A6465C", "A6781G", "A6799C", "T6838G", "T6849A", "A6937C", "-6957A", "-6958T", "-6959A", "-6962A", "-6964T", "-6965A", "-6967C", "-7000A", "-7001A", "-7002A", "-7003T", "G7142T", "A7237G", "G7269A", "A7290G", "A7583C", "G7702T", "A8196G", "G8240A", "C8321G", "T8322C", "T8558G", "C8640T", "G8738A", "T8829A", "T8935A"], "INT": ["V165I"], "RT-p51": ["I326V"], "RT-p66": ["I326V"], "gp120": ["N57T", "D202N", "K361N", "N418V", "-436E", "Q479G"], "gp41": ["T94P", "N251S", "R277L", "N298S"], "p17": ["N124S"], "p24": ["H87Q"], "vpu": ["I20V", "-69N", "D80A", "N81D"]}, "labels": {"aa": "INT: V165I; RT-p51: I326V; RT-p66: I326V; gp120: N57T, D202N, K361N, N418V, -436E, Q479G; gp41: T94P, N251S, R277L, N298S; p17: N124S; p24: H87Q; vpu: I20V, -69N, D80A, N81D"}}, "children": [{"name": "CRF18_cpx_NODE_0000002", "node_attrs": {"div": 0.09797999999999998, "clade_membership": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C426T", "C435A", "A503G", "A518G", "A542C", "T662G", "-714A", "T771C", "C1013A", "A1017C", "A1191C", "A1307G", "A1329T", "G1394A", "A1486G", "T1676C", "A1794G", "C1828A", "A1963G", "A1966G", "A2059G", "A2341G", "A2362G", "G2428A", "C2828A", "A2829C", "G2830T", "G2872A", "C2910A", "C2941T", "A3025G", "A3037G", "A3109G", "A3145G", "G3166A", "G3292A", "A3307T", "C3394T", "A3655C", "C4079T", "C4130A", "C4131G", "A4178G", "A4370C", "C4428T", "G4459A", "C4576T", "A4693C", "G4859A", "G5037A", "A5046C", "C5050A", "C5125T", "C5215T", "A5269G", "T5314C", "G5330A", "T5351G", "G5357A", "T5442C", "T5466C", "T5478C", "G5599T", "T5600A", "-5601A", "C5602T", "A5644G", "C5663T", "G5739-", "G5784A", "A5787C", "C5792A", "C5793G", "C5797T", "G5803A", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5861G", "-5866G", "T6166A", "T6169C", "T6178C", "-6197A", "-6200A", "-6201A", "-6202C", "-6203A", "-6204G", "-6205T", "-6206A", "-6207G", "-6209A", "-6210A", "-6211A", "-6212A", "-6213T", "-6214G", "-6225A", "-6226A", "-6228A", "-6229A", "A6276G", "C6281A", "-6327A", "A6580G", "A6647G", "C6758T", "G6771A", "G6773A", "A6777C", "A6798C", "C6843A", "T6892C", "T6901C", "-6956G", "-6966C", "-6968A", "-6971A", "-6972G", "-6973C", "-6974A", "-6975C", "-6978A", "-6979T", "-6980G", "-6981G", "-6986A", "-6987A", "-6990A", "-6995G", "-6997A", "-6998G", "-6999G", "C7020A", "G7044A", "T7153A", "G7275A", "C7393T", "A7591G", "A7626T", "C7633G", "A7744G", "T7789C", "A7798G", "C7843T", "T7876A", "T7877G", "G7883C", "C7906T", "T7921C", "T7932C", "G7942A", "C8009A", "T8153C", "G8280T", "G8329A", "A8370G", "A8447G", "C8480T", "C8491G", "-8521C", "-8522G", "-8523C", "T8770A", "A8793G", "A8794C", "G8807A", "A8812C", "A8882G", "T8947A", "C8994T"], "INT": ["P119S", "I135V", "T218I"], "RT-p51": ["Q245T", "P272Q", "E312D", "E404D"], "RT-p66": ["Q245T", "P272Q", "E312D", "E404D", "Q520H"], "gp120": ["T3A", "D4E", "S109D", "T115S", "-125E", "-126I", "K141R", "H302Y", "S306N", "K308T", "Q315-", "T330-", "-368D", "-371T", "-373G", "-374T", "-376G", "-379N", "P389Q", "R397N", "R412E"], "gp41": ["Y108F", "S192A", "V194L", "I210T", "I266V", "Y284H", "G326I"], "nef": ["A50S", "P53E", "F143Y", "S151A", "N157T", "F202Y"], "p17": ["L34I", "I61M", "K69N", "L107M", "N109K", "Q127K"], "p24": ["M96L"], "p6": ["S24P", "P25S", "-26L"], "p7": ["K7R"], "rev": ["V102T"], "tat": ["T57A", "S75P"], "vif": ["K36T", "D61E", "T155N", "T180I"], "vpu": ["I13V", "A19V"]}, "labels": {"aa": "INT: P119S, I135V, T218I; RT-p51: Q245T, P272Q, E312D, E404D; RT-p66: Q245T, P272Q, E312D, E404D, Q520H; gp120: T3A, D4E, S109D, T115S, -125E, -126I, K141R, H302Y, S306N, K308T, Q315-, T330-, -368D, -371T, -373G, -374T, -376G, -379N, P389Q, R397N, R412E; gp41: Y108F, S192A, V194L, I210T, I266V, Y284H, G326I; nef: A50S, P53E, F143Y, S151A, N157T, F202Y; p17: L34I, I61M, K69N, L107M, N109K, Q127K; p24: M96L; p6: S24P, P25S, -26L; p7: K7R; rev: V102T; tat: T57A, S75P; vif: K36T, D61E, T155N, T180I; vpu: I13V, A19V"}}, "children": [{"name": "AF377959", "node_attrs": {"div": 0.11784999999999998, "accession": "AF377959", "clade_membership": {"value": "CRF18_cpx"}, "country": {"value": "CM"}, "date": {"value": 1997.0}, "Strain_name": {"value": "CM53379"}, "LANL_subtype": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "A386G", "A390G", "A412G", "C471A", "A492C", "C493A", "G495A", "A500G", "G519A", "G524A", "A562G", "A585G", "C586T", "A656G", "G665C", "A666-", "G667-", "C668-", "A689G", "C771A", "C772G", "A815G", "T852A", "C947T", "A1002T", "A1097T", "C1103T", "T1229C", "G1271A", "A1278G", "A1279G", "G1313T", "C1350G", "-1455G", "-1456C", "-1457C", "C1514T", "G1690A", "C1745-", "-1747C", "-1748C", "C1751T", "T1752C", "G1760A", "T1792C", "A1793G", "A1839G", "A2007G", "G2155A", "G2173A", "C2199A", "T2338C", "A2395G", "A2419G", "C2575T", "A2578G", "A2626G", "A2710T", "A2727G", "A2743G", "C2822T", "A2842G", "G2921A", "C2985A", "A3151G", "G3168A", "A3230G", "C3252T", "C3266T", "A3280G", "C3294T", "T3358C", "G3398T", "T3449A", "T3541C", "C3688G", "G3756A", "T3757G", "A3768G", "G3880A", "G3891A", "A4225G", "T4234C", "A4255G", "A4376G", "G4388T", "A4423G", "A4427T", "A4608G", "G4616A", "A4692G", "A5187T", "C5221T", "G5305A", "A5312G", "C5383T", "A5396G", "T5424C", "A5460G", "C5480A", "A5545G", "C5551T", "A5622C", "T5641C", "T5687A", "C5704G", "-5739A", "A5792G", "G5793A", "A5795G", "T5797A", "A5803T", "C5806-", "T5807-", "-5809C", "-5810T", "-5811T", "A5863G", "G5948T", "A6001G", "C6116T", "C6165T", "-6167A", "-6170A", "-6171T", "-6172A", "-6175C", "A6176T", "-6180A", "A6182G", "A6186C", "C6189A", 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"G8110A", "G8130A", "C8146T", "C8149T", "T8164C", "C8165T", "T8166A", "G8173A", "G8185A", "G8222A", "G8264A", "A8271G", "T8280C", "A8284G", "T8292G", "T8384C", "T8451C", "C8500A", "T8501G", "T8507C", "A8653G", "T8675C", "G8816A", "C8913A", "G8917A", "A8928C", "G8933A", "G8968A", "A9082G"], "INT": ["S39N", "V112I", "I201V", "A205S", "I218L", "D278G", "V281M"], "RT-p51": ["T35K", "K211R", "P243S", "V276I", "A297E", "R358K", "S379G", "T386I", "T400I", "V435L"], "RT-p66": ["T35K", "K211R", "P243S", "V276I", "A297E", "R358K", "S379G", "T386I", "T400I", "V435L", "L452I", "S554K", "K558R"], "gp120": ["A32S", "T104I", "-105N", "-106I", "T112K", "-116E", "-121M", "-122E", "-123N", "-124R", "I133T", "I137L", "K140R", "P155Q", "N159-", "N206S", "K265V", "H280R", "Q300K", "Y302S", "N304K", "R307K", "T313A", "E316-", "V317-", "V318-", "T319S", "Q320K", "L321V", "G322A", "K323T", "H324Q", "-326G", "-328K", "-330K", "I332N", "N364-", "S365-", "-369S", "-370T", "-372N", "-375N", "-377S", "-378N", "-384D", "V396I", "N414S", "I421V", "-434S", "-437E", "-438V", "-439T"], "gp41": ["S101T", "D110E", "D121E", "Q129E", "N160S", "V197I", "L249V", "L288Y", "V307I", "V321I", "Q323R", "I326T", "L330R"], "nef": ["I10V", "Q104R"], "p17": ["I19V", "K26R", "L46I", "T53Q", "A54T", "E62K", "K76R", "T84V", "K109-", "S111N"], "p2": ["N9H", "-12N"], "p24": ["V11I", "S41T", "I91F", "N183G"], "p6": ["R4K"], "pro": ["K14R", "K70R"], "rev": ["R53C", "P67R", "D84G", "D88N", "P100S", "Q101*", "S106L", "V109I", "G113R"], "tat": ["P3S", "N7S", "P59S", "L68P", "Q87*"], "vif": ["M8V", "T36A", "I154L"], "vpr": ["N28I", "I70V", "A93V"], "vpu": ["-5H", "F27Y", "L33V", "E60D", "L61T", "S62-", "N69V", "-70E", "-71M", "-72G", "-73N"]}, "labels": {"aa": "INT: S39N, V112I, I201V, A205S, I218L, D278G, V281M; RT-p51: T35K, K211R, P243S, V276I, A297E, R358K, S379G, T386I, T400I, V435L; RT-p66: T35K, K211R, P243S, V276I, A297E, R358K, S379G, T386I, T400I, V435L, L452I, S554K, K558R; gp120: A32S, T104I, -105N, -106I, T112K, -116E, -121M, -122E, -123N, -124R, I133T, I137L, K140R, P155Q, N159-, N206S, K265V, H280R, Q300K, Y302S, N304K, R307K, T313A, E316-, V317-, V318-, T319S, Q320K, L321V, G322A, K323T, H324Q, -326G, -328K, -330K, I332N, N364-, S365-, -369S, -370T, -372N, -375N, -377S, -378N, -384D, V396I, N414S, I421V, -434S, -437E, -438V, -439T; gp41: S101T, D110E, D121E, Q129E, N160S, V197I, L249V, L288Y, V307I, V321I, Q323R, I326T, L330R; nef: I10V, Q104R; p17: I19V, K26R, L46I, T53Q, A54T, E62K, K76R, T84V, K109-, S111N; p2: N9H, -12N; p24: V11I, S41T, I91F, N183G; p6: R4K; pro: K14R, K70R; rev: R53C, P67R, D84G, D88N, P100S, Q101*, S106L, V109I, G113R; tat: P3S, N7S, P59S, L68P, Q87*; vif: M8V, T36A, I154L; vpr: N28I, I70V, A93V; vpu: -5H, F27Y, L33V, E60D, L61T, S62-, N69V, -70E, -71M, -72G, -73N"}}}, {"name": "CRF18_cpx_NODE_0000003", "node_attrs": {"div": 0.10265999999999999, "clade_membership": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A820G", "T979C", "C1091T", "C1118T", "G1124A", "T1334C", "T1728G", "C1756T", "A3115G", "G3334A", "G3427A", "G3494A", "G3553A", "T3970C", "G4573A", "G5086A", "T5451C", "A5463G", "T5627C", "-5791G", "T5799G", "G5800T", "T5801C", "G5808T", "C5834T", "G5907A", "A6179G", "A6335G", "G6336A", "G6346A", "A6638G", "C6799T", "G6802A", "T6808C", "C6850G", "C6888T", "A6889G", "-6970G", "-6976A", "-6984C", "-6985A", "-6989A", "C7096T", "A7265T", "C7747T", "A7938G", "A8652C", "G8868A"], "RT-p66": ["V467I"], "gp120": ["R18K", "N111S", "-158N", "K262E", "T345M", "T471S"], "gp41": ["N212S"], "p24": ["S14P", "K30R", "E79D", "I83T"], "vpu": ["V7A"]}, "labels": {"aa": "RT-p66: V467I; gp120: R18K, N111S, -158N, K262E, T345M, T471S; gp41: N212S; p24: S14P, K30R, E79D, I83T; vpu: V7A"}}, "children": [{"name": "KP718931", "node_attrs": {"div": 0.13896999999999998, "accession": "KP718931", "clade_membership": {"value": "CRF18_cpx"}, "country": {"value": "CM"}, "date": {"value": 2011.0}, "Strain_name": {"value": "B4043_15"}, "LANL_subtype": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A263G", "T305A", "A388G", "C393A", "A431G", "C478A", "C531T", "C542T", "A562G", "G579A", "A585G", "C586T", "G629A", "G650A", "A656G", "A664G", "G677A", "G687A", "C707T", "A752G", "A759C", "T760C", "A762G", "A815G", "C823G", "T852A", "A932G", "A968T", "C1060A", "A1079C", "G1090A", "A1134G", "A1160G", "T1182C", "A1208G", "G1232A", "A1241G", "C1247T", "A1278C", "T1280G", "A1292T", "A1293T", "C1351A", "C1362T", "-1455G", "-1456C", "-1457C", "G1472A", "G1498A", "A1499G", "A1642G", "T1646C", "G1661A", "G1664A", "T1723C", "G1731A", "G1769A", "A1775G", "A1776C", "C1782T", "T1791A", "A1793G", "G1794A", "C1826A", "C1831T", "A1839G", "A1840G", "A1841G", "G1845A", "G1852A", "T1888C", "G1901A", "A1902C", "A1982G", "G1998A", "A2038T", "G2059A", "T2086C", "T2146C", "G2173A", "A2215T", "C2269T", "A2320G", "A2404G", "G2422A", "G2509A", "G2539A", "A2563G", "T2620C", "G2630A", "G2665A", "G2704A", "A2716C", "C2829T", "T2830C", "C2845A", "G2926A", "A2938G", "G2984A", "T3031G", "A3043G", "A3073G", "G3109A", "A3136G", "A3154G", "A3192G", "C3222T", "C3322A", "G3344A", "T3346A", "C3359T", "T3380C", "A3448G", "A3484G", "A3490G", "C3499T", "C3500A", "C3567T", "G3595A", "A3637G", "C3655A", "G3664A", "C3692T", "T3695G", "A3745G", "C3763T", "G3769A", "G3796A", "A3802G", "A3838C", "G3866A", "G3952A", "T3985A", "T4085C", "T4110C", "C4123T", "T4147A", "T4180C", "A4189G", "A4255G", "A4293G", "C4318T", "A4430C", "A4564G", "T4697A", "C4715T", "C4757T", "C4786T", "T4835C", "C4857T", "A4871G", "A4911C", "T4916C", "A4924C", "A5021G", "C5038G", "T5152C", "T5197G", "C5221T", "C5242T", "A5246G", "G5276A", "A5277T", "T5313C", "A5352G", "T5354G", "C5445T", "A5484G", "A5499G", "A5545G", "C5579T", "G5587A", "T5603C", "A5667G", "T5688A", "A5689G", "T5707A", "T5708G", "A5717G", "-5739T", "A5790G", "A5818G", "C5827T", "G5861A", "C5924T", "C5974T", "A6001G", "A6030G", "T6085G", "C6134T", "C6160A", "A6168-", "C6169-", "A6173-", "C6174-", "-6180C", "A6183C", "A6186G", "T6193C", "-6198G", "T6199C", "A6203G", "G6204T", "T6205G", "A6206G", "G6207A", "-6208G", "A6211C", "G6214A", "A6225G", "C6256T", "A6273G", "A6275C", "A6320C", "T6325G", "A6326G", "T6340C", "G6451A", "A6471G", "C6477A", "A6565G", "G6578A", "G6583A", "C6613T", "C6632T", "G6647A", "A6654C", "A6659G", "C6660T", "A6679G", "T6688C", "A6706G", "G6716A", "T6719C", "G6743A", "T6745C", "A6780G", "G6788A", "C6798G", "A6800G", "C6810A", "A6823C", "C6824A", "A6825G", "-6830A", "-6831G", "-6832C", "C6835G", "A6837G", "G6838C", "G6840A", "C6841T", "A6842-", "A6843-", "A6844-", "A6854C", "A6884G", "T6895C", "A6926G", "A6935C", "C6937A", "-6960A", "-6961G", "-6963G", "A6968T", "-6969G", "G6972A", "C6973T", "-6977C", "A6978C", "T6979A", "G6980A", "G6981T", "-6982A", "-6983G", "A6986G", "A6987C", "-6988T", "A6990T", "-6991G", "-6993G", "-6994G", "-6996A", "A7001G", "-7004G", "-7005A", "-7006T", "-7007A", "-7008C", "-7009T", "C7016T", "A7021G", "G7026A", "A7089C", "A7090G", "A7106G", "A7151G", "A7152C", "-7154A", "-7159A", "-7162T", "A7234G", "G7290A", "G7307A", "C7313A", "C7411T", "C7510T", "C7561T", "T7588C", "G7591A", "T7604A", "C7605G", "C7645T", "C7688A", "A7690C", "A7691T", "A7722G", "C7789T", "G7798T", "T7801C", "C7874A", "A7882G", "C7926T", "T7968C", "C7984A", "G7995A", "G7998A", "A8023G", "C8047T", "G8055A", "T8097C", "A8099G", "G8133A", "C8146T", "A8152G", "C8153A", "G8158C", "G8170A", "T8203C", "G8264A", "G8276A", "C8277G", "A8279G", "A8288G", "T8290G", "C8311A", "G8317A", "C8323T", "G8370A", "G8404A", "A8417G", "A8424G", "A8446G", "C8460T", "C8500A", "T8501G", "C8510T", "A8531T", "G8537A", "G8554A", "C8699T", "G8732A", "A8738G", "C8741T", "T8810C", "A8829T", "C8832T", "A8837G", "C8905G", "G8933A", "G8936A", "C9068T"], "INT": ["V31I", "V112T", "K173R", "K219Q"], "RT-p51": ["E40D", "V179I", "E207D", "T245I", "D250E", "A297T", "D312E", "K366R", "A376V", "V417I"], "RT-p66": ["E40D", "V179I", "E207D", "T245I", "D250E", "A297T", "D312E", "K366R", "A376V", "V417I", "L469I", "S491L", "H520Q", "S534A"], "gp120": ["A3T", "E59G", "H77Q", "N102K", "T107-", "D109A", "-116N", "-117V", "-118E", "-119N", "-120I", "-124G", "K140R", "I156L", "-157D", "-160D", "-161G", "N206S", "T208K", "V242M", "M243I", "L260F", "N267T", "T269V", "A288T", "F289L", "D294A", "D297N", "E309G", "D312N", "-315R", "V318A", "T319S", "Q320K", "L321S", "G322N", "K323-", "H324-", "L325-", "N327-", "S329-", "I332K", "K334Q", "T344A", "N358D", "N361Q", "-369K", "-370S", "-372W", "-382G", "-383D", "-384D", "R391K", "E412A", "K433A", "-434T", "E436D", "-437V", "-438T", "G479E"], "gp41": ["V2I", "L4I", "D110E", "Q129N", "I130L", "N140S", "L191I", "I193M", "T208I", "I222T", "R231K", "G232D", "S251N", "L265S", "L277N", "H284N", "V321I", "A325S", "I326V", "I329V"], "nef": ["R21K", "K28E", "Q35R", "H40Y", "E63D", "R71K", "S163C", "E176K", "T188S", "K192R"], "p1": ["K4R"], "p17": ["K18R", "P48H", "P66S", "K76R", "V82I", "T84V", "K110R", "A118T"], "p2": ["N9H", "-12N"], "p24": ["M10P", "A31G", "S41T", "T110N", "S120N", "I135V", "N183Q", "E187D", "T188S", "A207Q"], "p6": ["F15-", "G16-", "F17S", "E19V", "I21E", "A22I", "-23A", "K33Q", "L38M", "S51L"], "p7": ["R11K"], "pro": ["L10I", "K14R", "I15V", "G16E", "E35T", "I62V", "C67Y"], "rev": ["I59V", "P67S", "D84G", "P100S", "T102E", "V104L", "A108T"], "tat": ["Q35P", "E71K", "P73S", "T77A"], "vif": ["T67I", "M109L", "D113A", "T151R", "I154L", "R167K", "M189T"], "vpr": ["N48D", "E58I", "I70T", "I83V"], "vpu": ["-5Q", "F27L", "I28V", "L34R", "K37R", "E44D", "-67V", "-68G", "-70Y", "-71N", "-72L", "-73G", "H74Y", "N75-", "P76-", "G77-", "Y78-"]}, "labels": {"aa": "INT: V31I, V112T, K173R, K219Q; RT-p51: E40D, V179I, E207D, T245I, D250E, A297T, D312E, K366R, A376V, V417I; RT-p66: E40D, V179I, E207D, T245I, D250E, A297T, D312E, K366R, A376V, V417I, L469I, S491L, H520Q, S534A; gp120: A3T, E59G, H77Q, N102K, T107-, D109A, -116N, -117V, -118E, -119N, -120I, -124G, K140R, I156L, -157D, -160D, -161G, N206S, T208K, V242M, M243I, L260F, N267T, T269V, A288T, F289L, D294A, D297N, E309G, D312N, -315R, V318A, T319S, Q320K, L321S, G322N, K323-, H324-, L325-, N327-, S329-, I332K, K334Q, T344A, N358D, N361Q, -369K, -370S, -372W, -382G, -383D, -384D, R391K, E412A, K433A, -434T, E436D, -437V, -438T, G479E; gp41: V2I, L4I, D110E, Q129N, I130L, N140S, L191I, I193M, T208I, I222T, R231K, G232D, S251N, L265S, L277N, H284N, V321I, A325S, I326V, I329V; nef: R21K, K28E, Q35R, H40Y, E63D, R71K, S163C, E176K, T188S, K192R; p1: K4R; p17: K18R, P48H, P66S, K76R, V82I, T84V, K110R, A118T; p2: N9H, -12N; p24: M10P, A31G, S41T, T110N, S120N, I135V, N183Q, E187D, T188S, A207Q; p6: F15-, G16-, F17S, E19V, I21E, A22I, -23A, K33Q, L38M, S51L; p7: R11K; pro: L10I, K14R, I15V, G16E, E35T, I62V, C67Y; rev: I59V, P67S, D84G, P100S, T102E, V104L, A108T; tat: Q35P, E71K, P73S, T77A; vif: T67I, M109L, D113A, T151R, I154L, R167K, M189T; vpr: N48D, E58I, I70T, I83V; vpu: -5Q, F27L, I28V, L34R, K37R, E44D, -67V, -68G, -70Y, -71N, -72L, -73G, H74Y, N75-, P76-, G77-, Y78-"}}}, {"name": "MN153475", "node_attrs": {"div": 0.1367, "accession": "MN153475", "clade_membership": {"value": "CRF18_cpx"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10CMLB018"}, "LANL_subtype": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C300T", "A398G", "A499G", "A513T", "A516T", "G519C", "T525A", "A548G", "T596C", "T614G", "A619G", "A675G", "C679A", "C713T", "T763C", "T777A", "A779C", "C845T", "G899A", "C902T", "A903G", "A968C", "G998A", "T1004C", "A1013T", "A1157G", "T1175C", "C1261G", "A1263T", "G1271T", "A1277G", "C1299T", "G1339A", "C1350T", "-1452A", "-1453C", "-1454C", "C1556T", "C1730T", "C1755T", "G1766C", "A1804G", "G1819A", "A1904-", "A1921G", "A1951G", "A2002G", "C2211T", "A2214C", "A2241G", "T2389C", "G2462A", "T2497C", "T2527C", "G2530A", "G2602A", "A2612G", "A2617C", "G2714C", "A2728G", "T2737A", "C2740T", "T2824A", "G2837C", "A2839C", "A2911G", "G2946A", "C2985T", "A3080G", "G3085A", "A3151C", "A3233G", "G3236A", "C3271T", "C3303T", "G3439A", "T3472A", "G3483A", "C3542T", "T3742C", "A3805G", "A3808C", "A3816G", "A3825C", "C3826T", "T3850G", "G3891A", "T3985G", "A4105G", "A4109G", "C4182T", "A4264G", "G4549A", "G4677A", "A4684G", "C4690T", "T4702C", "G4719C", "A4760G", "C4761T", "G4767A", "A4774C", "G4818A", "A4860G", "A4862G", "A4937C", "C4943T", "A4944G", "T4976C", "A5005G", "C5046A", "A5054C", "A5057G", "T5078C", "A5085C", "A5119G", "G5131A", "A5187C", "T5194C", "T5197C", "G5212A", "A5277G", "C5336A", "G5355A", "C5392T", "C5393T", "A5402C", "G5403A", "C5412T", "A5461G", "C5551T", "T5554C", "G5557A", "C5620A", "A5621T", "A5622G", "G5635A", "G5668A", "A5689C", "G5703A", "A5709G", "T5727A", "T5731-", "T5732-", "A5733-", "A5734-", "T5735-", "T5736-", "G5737-", "A5738-", "A5740-", "G5741-", "A5742-", "A5743-", "T5744-", "A5745-", "A5746-", "G5747-", "A5748-", "G5749-", "A5750-", "C5751-", "A5752-", "G5753-", "T5781G", "G5812A", "C5827G", "C5851T", "G5853A", "C5859T", "A5865G", "G5866A", "C5869T", "G5948A", "T6046C", "A6118G", "A6164G", "C6165T", "-6167G", "-6170T", "-6171A", "-6172C", "-6175T", "C6178G", "-6180T", "T6181C", "T6184C", "T6187A", "A6188G", "C6189G", "A6192C", "A6194G", "G6195T", "T6196G", "-6198A", "A6200G", "-6208C", "A6210C", "A6212G", "-6215G", "-6216A", "-6217A", "-6218G", "-6219C", "-6220C", "-6221A", "-6222A", "-6223A", "A6229G", "C6289T", "G6292A", "A6302G", "A6303T", "A6311C", "T6322G", "A6333C", "T6337A", "G6338A", "C6412T", "C6477T", "A6478G", "A6505G", "G6532A", "G6547A", "A6559C", "A6574G", "A6575G", "A6604G", "G6605A", "A6608C", "A6611G", "A6635C", "A6637G", "C6752A", "A6764C", "A6773C", "A6775T", "A6776G", "C6777G", "G6779A", "A6789G", "C6790A", "C6797T", "C6807T", "G6818A", "G6821A", "C6826T", "A6837C", "G6838A", "A6849T", "A6854G", "T6876G", "G6905A", "G6956A", "A6957T", "T6958G", "-6960C", "-6961T", "-6963A", "A6965G", "C6967T", "-6969T", "-6982T", "-6983A", "-6988A", "-6991T", "A6992G", "-6993A", "-6994T", "G6995A", "-6996C", "G6999A", "A7002C", "C7084T", "T7107A", "T7143A", "G7145A", "A7149G", "A7152G", "-7154G", "C7155A", "T7156C", "C7158A", "G7160-", "A7161-", "-7165C", "G7166A", "T7180A", "C7463A", "A7471G", "G7477A", "C7529T", "A7533G", "G7633T", "T7702C", "C7723T", "G7759A", "G7790A", "A7880G", "A7931G", "G7991A", "G7997A", "G8110A", "A8118G", "T8122-", "C8123-", "T8124-", "G8125-", "G8126-", "G8127-", "A8128-", "C8129-", "G8130-", "C8131-", "A8132-", "G8133-", "C8153G", "A8154T", "G8158A", "T8166A", "T8167C", "C8213T", "G8222A", "C8242T", "T8256C", "C8277T", "T8287A", "A8288T", "C8311T", "C8323A", "G8354A", "C8369T", "A8424C", "G8479A", "A8481C", "G8487C", "A8490G", "G8516A", "A8518C", "T8597C", "C8651A", "A8656G", "C8676T", "C8684T", "G8717A", "C8747T", "A8762G", "C8775T", "C8794T", "C8835T", "A8859G", "A8869T", "C8913A", "G8914T", "G8917A", "C9078T", "T9081G", "A9095G", "G9132A"], "INT": ["E11D", "K14R", "N17T", "D25E", "S39N", "T136I"], "RT-p51": ["T39I", "E40A", "K49R", "D123N", "T173A", "K174N", "E207Q", "F214L", "E248H", "R284K", "A297V", "I329V", "I380V", "V381I", "T403I"], "RT-p66": ["T39I", "E40A", "K49R", "D123N", "T173A", "K174N", "E207Q", "F214L", "E248H", "R284K", "A297V", "I329V", "I380V", "V381I", "T403I", "R463K", "H483Y"], "gp120": ["A2V", "E4G", "A32T", "T104V", "-105D", "-106Y", "T110S", "N113V", "S114E", "S115A", "-123K", "-124E", "K150V", "I153L", "I156M", "-157K", "-160T", "-161E", "T208M", "K241E", "D251N", "N252H", "T253A", "K261Q", "K265E", "Q300K", "N304H", "T308G", "E309K", "D312G", "-315S", "E316K", "G322R", "-326N", "N327T", "-328S", "S329K", "I332M", "K334E", "I341R", "G351R", "D368M", "-369N", "-370D", "-377T", "-378K", "-380T", "-381E", "V418K", "F430Y", "V431I", "N432S", "K433R", "-434D", "T435N", "E436M", "-437T"], "gp41": ["L54M", "K77R", "D163N", "I193V", "T210A", "G230S", "G232S", "V266I", "E272G", "L274-", "G275-", "R276-", "L277-", "H284V", "L288H", "L304F", "V307I", "V318A", "A325V", "I329F"], "nef": ["I10V", "K28Q", "S46N", "N47H", "A49P", "S50G", "E53A", "E59A", "K105R", "A151V", "M173V", "E176M", "R191M"], "p17": ["E55G", "I60L", "M61L", "E62Q", "L64I", "D93E", "K95R", "M107I", "K114E", "T115K"], "p2": ["Q8T", "A11-"], "p24": ["V11T", "S16T", "I58V", "A177G", "T178S", "E180D", "R203K", "A207S"], "p6": ["F17V", "E29D", "T39A", "K42R", "S47N"], "pro": ["I36-"], "rev": ["Y28C", "R48K", "R50K", "D88N", "S92-", "G93-", "T94-", "Q95-", "T102S", "V104M", "S107P"], "tat": ["P6F", "E9A", "K29E"], "vif": ["V31I", "K33R", "A35V", "F39S", "E45Q", "E61K", "K63T", "E78K", "K92E", "E117D", "I120V", "N140S", "R167Q", "Q178R", "G182D"], "vpr": ["N28T", "E58G", "H77Q", "V84I", "S96F"], "vpu": ["-5M", "V10I", "V21I", "I28L", "D40E", "L42-", "I43-", "E44-", "R45-", "I46-", "R47-", "D48-", "R49-"]}, "labels": {"aa": "INT: E11D, K14R, N17T, D25E, S39N, T136I; RT-p51: T39I, E40A, K49R, D123N, T173A, K174N, E207Q, F214L, E248H, R284K, A297V, I329V, I380V, V381I, T403I; RT-p66: T39I, E40A, K49R, D123N, T173A, K174N, E207Q, F214L, E248H, R284K, A297V, I329V, I380V, V381I, T403I, R463K, H483Y; gp120: A2V, E4G, A32T, T104V, -105D, -106Y, T110S, N113V, S114E, S115A, -123K, -124E, K150V, I153L, I156M, -157K, -160T, -161E, T208M, K241E, D251N, N252H, T253A, K261Q, K265E, Q300K, N304H, T308G, E309K, D312G, -315S, E316K, G322R, -326N, N327T, -328S, S329K, I332M, K334E, I341R, G351R, D368M, -369N, -370D, -377T, -378K, -380T, -381E, V418K, F430Y, V431I, N432S, K433R, -434D, T435N, E436M, -437T; gp41: L54M, K77R, D163N, I193V, T210A, G230S, G232S, V266I, E272G, L274-, G275-, R276-, L277-, H284V, L288H, L304F, V307I, V318A, A325V, I329F; nef: I10V, K28Q, S46N, N47H, A49P, S50G, E53A, E59A, K105R, A151V, M173V, E176M, R191M; p17: E55G, I60L, M61L, E62Q, L64I, D93E, K95R, M107I, K114E, T115K; p2: Q8T, A11-; p24: V11T, S16T, I58V, A177G, T178S, E180D, R203K, A207S; p6: F17V, E29D, T39A, K42R, S47N; pro: I36-; rev: Y28C, R48K, R50K, D88N, S92-, G93-, T94-, Q95-, T102S, V104M, S107P; tat: P6F, E9A, K29E; vif: V31I, K33R, A35V, F39S, E45Q, E61K, K63T, E78K, K92E, E117D, I120V, N140S, R167Q, Q178R, G182D; vpr: N28T, E58G, H77Q, V84I, S96F; vpu: -5M, V10I, V21I, I28L, D40E, L42-, I43-, E44-, R45-, I46-, R47-, D48-, R49-"}}}]}]}, {"name": "CRF18_cpx_NODE_0000004", "node_attrs": {"div": 0.09714999999999999, "clade_membership": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C435T", "C537G", "A697C", "-714C", "G1019A", "A1025T", "G1077A", "A1079G", "A1115C", "C1330A", "C1478A", "C1688A", "C1724G", "G1763A", "C1782A", "T1783-", "A1793C", "A1794T", "A1903C", "G1972A", "C2356T", "T2464G", "C2613A", "A2615G", "G2878A", "A2929G", "C2942A", "G2951A", "T3031G", "A3043G", "A3070G", "C3095T", "G3264A", "A3348G", "C3356T", "T3399C", "T3449A", "A3490G", "C3500A", "T3793A", "A3814T", "C3857T", "C3995A", "G3997A", "A4109G", "T4291G", "A4376G", "G4727A", "C4883T", "A4911C", "A4952T", "C5051T", "G5075A", "A5210C", "A5324G", "C5446A", "G5448T", "G5558A", "C5614G", "C5620-", "T5687A", "C5704A", "G5706A", "-5861A", "G5948T", "A5964G", "A5965C", "-6167A", "-6170G", "-6171T", "-6172A", "-6180G", "A6192C", "A6232G", "A6403C", "T6454C", "A6461C", "A6636C", "A6679G", "A6848G", "C6862T", "-6956A", "-6960A", "-6963G", "-7004A", "-7005A", "-7006T", "-7007A", "-7008C", "-7009T", "C7045A", "G7058A", "T7059C", "T7086G", "G7088A", "A7089G", "C7096T", "A7106T", "A7151C", "-7159A", "-7162G", "-7163A", "-7164A", "-7165T", "G7168T", "G7438A", "A7818G", "A7936G", "T7968C", "A8093C", "C8171T", "A8279G", "T8431C", "G8434A", "T8440A", "T8444C", "T8450G", "T8451G", "T8452A", "A8453G", "G8454C", "T8456C", "G8466T", "A8469G", "G8476A", "A8490G", "G8499C", "G8506A", "A8525G", "T8582C", "A8686T", "T8703C", "A8746T", "C8835T", "C9078T"], "INT": ["D6E", "E13D", "L74I", "I201V"], "RT-p51": ["D123E", "T173K", "K174E", "L283I", "A286T", "H334Y", "R390K", "N418S", "H421Y", "V435A"], "RT-p66": ["D123E", "T173K", "K174E", "L283I", "A286T", "H334Y", "R390K", "N418S", "H421Y", "V435A", "L452I", "L469I", "S491T"], "gp120": ["D21N", "A32S", "K37S", "-105N", "-106V", "I133V", "I137L", "K143Q", "-157S", "-161N", "E183D", "N203Q", "R307K", "Q315H", "K323E", "-328K", "I332V", "V402T", "I411S", "K433Q", "-437N"], "gp41": ["K172R", "N195K", "I222T", "I264L"], "nef": ["V30A", "G31-", "V33E", "D36E", "L37E", "D38Q", "A42S", "I43V", "S45N", "C55Y", "A60E", "Q61-", "Y115F", "F121L", "Y135F"], "p17": ["L68V", "D121A"], "p24": ["M96I", "G116R", "E128D", "S200N", "A207P"], "p6": ["N3K", "F15L", "-23P", "L35K", "L38F", "T39S", "*50S"], "pro": ["E35D"], "rev": ["A15T", "K30E", "E54A", "N82T", "A108V"], "tat": ["Q24N", "G61D", "Q76R"], "vif": ["M109L", "K122N"], "vpu": ["P3D", "F27Y", "L33I", "-67M", "-68G"]}, "labels": {"aa": "INT: D6E, E13D, L74I, I201V; RT-p51: D123E, T173K, K174E, L283I, A286T, H334Y, R390K, N418S, H421Y, V435A; RT-p66: D123E, T173K, K174E, L283I, A286T, H334Y, R390K, N418S, H421Y, V435A, L452I, L469I, S491T; gp120: D21N, A32S, K37S, -105N, -106V, I133V, I137L, K143Q, -157S, -161N, E183D, N203Q, R307K, Q315H, K323E, -328K, I332V, V402T, I411S, K433Q, -437N; gp41: K172R, N195K, I222T, I264L; nef: V30A, G31-, V33E, D36E, L37E, D38Q, A42S, I43V, S45N, C55Y, A60E, Q61-, Y115F, F121L, Y135F; p17: L68V, D121A; p24: M96I, G116R, E128D, S200N, A207P; p6: N3K, F15L, -23P, L35K, L38F, T39S, *50S; pro: E35D; rev: A15T, K30E, E54A, N82T, A108V; tat: Q24N, G61D, Q76R; vif: M109L, K122N; vpu: P3D, F27Y, L33I, -67M, -68G"}}, "children": [{"name": "AY586540", "node_attrs": {"div": 0.12968, "accession": "AY586540", "clade_membership": {"value": "CRF18_cpx"}, "country": {"value": "CU"}, "date": {"value": 1999.0}, "Strain_name": {"value": "CU76"}, "LANL_subtype": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G301A", "G378A", "C379A", "G407A", "A437G", "A461G", "T485G", "A509G", "C531T", "G534T", "G537A", "C558A", "A605G", "A606G", "A699G", "A762G", "G776A", "C917T", "G977A", "A992G", "C1005G", "C1040T", "G1090A", "C1115T", "C1211T", "G1298A", "A1370G", "G1404A", "C1415T", "G1430A", "A1442T", "C1449A", "-1452A", "-1453C", "-1454C", "C1536A", "G1589A", "T1598C", "G1619A", "A1691G", "C1767T", "A1775G", "A1776G", "G1779A", "G1781A", "A1782-", "A1784-", "A1840G", "G1981A", "A2007G", "A2215G", "A2242G", "A2368G", "G2498A", "T2521C", "G2714C", "T2824G", "A2887G", "G2902A", "C2985T", "G3004A", "G3010A", "A3037G", "G3094A", "A3136G", "G3169A", "A3193G", "A3196G", "C3253T", "C3266T", "T3355G", "A3357T", "A3364G", "T3368C", "A3463G", "G3477A", "G3494A", "G3523A", "C3533G", "A3556G", "A3562G", "A3565G", "T3566C", "C3567A", "A3568G", "C3682A", "T3754C", "G3766A", "A3768G", "G3772A", "C3773T", "T3946C", "T3968C", "T3985G", "T4015C", "T4073C", "C4075T", "A4076C", "A4162T", "G4228A", "T4276C", "A4303C", "A4391T", "C4396A", "A4414C", "T4537C", "A4546T", "T4656A", "G4695A", "G4696A", "G4769T", "A4774C", "G4784A", "G4816A", "A4861G", "C4914T", "A5030T", "A5140G", "T5203C", "G5212A", "C5237T", "C5336A", "G5363A", "A5462G", "C5480A", "G5548A", "A5566C", "C5579T", "T5600-", "A5607G", "A5611G", "T5612G", "A5613G", "A5619T", "-5620G", "A5629G", "C5631T", "G5635A", "A5652T", "G5668T", "T5669G", "A5706T", "A5728G", "A5734T", "A5770T", "T5781G", "A5787C", "-5791G", "C5792A", "C5793G", "C5797T", "T5799A", "G5800T", "T5801C", "G5803A", "G5808T", "-5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5851G", "-5866T", "A5867C", "G5907A", "A5916T", "T5917A", "A6008G", "A6030G", "C6100T", "-6175T", "A6176T", "A6182G", "A6183G", "T6184A", "T6187C", "C6189A", "A6194T", "-6197G", "-6198C", "-6200A", "-6201G", "-6202C", "-6203A", "-6204A", "-6205T", "-6206A", "-6207G", "-6208T", "-6209A", "-6210G", "-6211C", "-6212A", "-6213T", "-6214A", "-6215A", "-6218G", "-6219C", "-6220T", "-6221A", "-6222C", "-6223A", "-6225A", "-6226A", "-6228A", "-6229A", "A6248T", "A6249T", "A6263G", "A6275C", "C6289T", "T6307A", "C6317T", "T6322A", "A6323G", "-6327G", "A6332T", "G6339A", "T6382C", "G6391A", "A6395T", "C6463A", "A6464C", "C6489G", "C6496T", "C6545T", "A6616G", "A6637G", "A6639C", "A6649C", "A6654C", "A6669G", "A6684G", "T6772C", "G6774A", "G6781T", "A6800G", "A6822G", "G6848T", "A6935G", "A6936C", "C6938T", "-6961T", "A6962G", "-6966C", "-6968T", "-6969G", "-6970G", "-6971A", "-6972T", "-6973A", "-6974A", "-6975A", "-6976A", "-6977C", "-6978T", "-6979A", "-6980G", "-6981A", "-6982T", "-6983A", "-6984A", "-6985C", "-6986A", "-6987C", "-6988T", "-6989A", "-6990C", "-6991A", "-6993A", "-6994T", "-6995A", "-6996C", "-6997G", "-6998C", "-6999A", "A7004G", "A7005G", "C7020A", "T7107C", "A7123G", "T7142C", "G7145A", "A7148C", "-7154G", "A7183G", "G7198A", "T7222C", "G7285A", "A7306C", "A7315G", "G7366A", "G7369A", "C7463A", "A7591G", "T7622A", "T7627C", "G7640A", "A7691T", "A7701C", "T7702A", "A7782C", "T7796A", "T7888G", "T7921C", "G7944T", "A7974G", "C8005A", "G8030A", "C8044G", "T8097G", "C8123T", "C8146T", "A8152G", "T8155C", "T8171G", "G8234A", "T8235C", "G8264A", "G8276A", "G8329A", "C8342T", "G8354A", "A8370C", "C8413A", "T8414A", "C8415G", "C8416A", "G8418C", "C8419T", "G8421C", "A8423T", "A8425G", "G8427A", "G8428C", "A8429T", "G8430C", "A8432T", "G8433C", "A8434C", "A8455G", "C8456A", "A8459G", "A8465G", "T8470G", "A8482G", "G8502A", "T8505C", "T8507C", "C8509G", "T8511C", "G8513A", "-8521A", "-8522G", "-8523G", "T8546C", "G8558C", "A8576T", "A8647T", "C8650T", "A8652C", "A8660G", "A8662C", "C8676T", "C8684T", "C8702T", "A8739G", "A8750C", "A8756C", "G8774A", "C8790T", "C8831T", "G8852A", "T8887A", "A8904G", "G8933A", "G8936A", "A8977G", "C8978A", "A8979C", "C9155T", "A9159T", "T9160A"], "INT": ["C65R", "F100L", "I101L", "T206S", "D207E", "L213F"], "RT-p51": ["V135I", "E207Q", "A297V", "Y421F"], "RT-p66": ["V135I", "E207Q", "A297V", "Y421F", "R461K", "V467I", "Q480E", "T491Q", "D529E", "K558R"], "gp120": ["N5H", "R18K", "N21V", "N52D", "E59G", "T110G", "T112N", "N113T", "T115A", "-116S", "-117N", "-118S", "-119S", "-120I", "N159D", "T181S", "T204P", "T212R", "K261T", "K262T", "K265N", "N267T", "N272S", "K277R", "K307E", "E309D", "V318A", "E323G", "V332Y", "N361A", "-378N", "-379K", "-380T", "-382G", "-383T", "-384W", "P389Q", "V418S", "F430L", "V431I", "Q433H", "-438V", "-439T", "K474R"], "gp41": ["L54M", "S107T", "D113N", "I130L", "N133T", "N160T", "S165T", "R214L", "E224G", "A243T", "D247E", "L265W", "L277S", "L290V", "V311T", "V321I", "A325T"], "nef": ["I10L", "P24Q", "P25E", "A26L", "A27P", "K28R", "G29T", "A30P", "-31P", "Q38R", "V43G", "N47S", "A54T", "Y55H", "A56G", "W57R", "-61E", "Y102F", "S103F", "Q107P", "I133V", "P150S", "S151N", "M182K", "T188A", "K192R"], "p17": ["A15K", "P66S", "A67S", "V68I", "L75I", "R91G", "L107I", "T122A"], "p2": ["Q6H", "-10T", "A11N"], "p24": ["M15I", "P92A", "E98D", "S120N", "G225S"], "p6": ["P30S", "K33-"], "p7": ["L24I"], "pro": ["K70R"], "rev": ["R17S", "T32A", "R53S", "S61N", "R66G", "S92F", "P100S", "S103P", "V108G"], "tat": ["K29R", "A58T", "N64H", "N78S", "G79W"], "vif": ["L24I", "G37N", "K63T", "R77K", "K92R", "H110Y", "T151A", "E185G"], "vpr": ["H45Y", "H77Q"], "vpu": ["L4F", "-5E", "S8G", "V10I", "V21C", "R41G", "I43F", "N55Y", "D58E", "V65M", "L82V"]}, "labels": {"aa": "INT: C65R, F100L, I101L, T206S, D207E, L213F; RT-p51: V135I, E207Q, A297V, Y421F; RT-p66: V135I, E207Q, A297V, Y421F, R461K, V467I, Q480E, T491Q, D529E, K558R; gp120: N5H, R18K, N21V, N52D, E59G, T110G, T112N, N113T, T115A, -116S, -117N, -118S, -119S, -120I, N159D, T181S, T204P, T212R, K261T, K262T, K265N, N267T, N272S, K277R, K307E, E309D, V318A, E323G, V332Y, N361A, -378N, -379K, -380T, -382G, -383T, -384W, P389Q, V418S, F430L, V431I, Q433H, -438V, -439T, K474R; gp41: L54M, S107T, D113N, I130L, N133T, N160T, S165T, R214L, E224G, A243T, D247E, L265W, L277S, L290V, V311T, V321I, A325T; nef: I10L, P24Q, P25E, A26L, A27P, K28R, G29T, A30P, -31P, Q38R, V43G, N47S, A54T, Y55H, A56G, W57R, -61E, Y102F, S103F, Q107P, I133V, P150S, S151N, M182K, T188A, K192R; p17: A15K, P66S, A67S, V68I, L75I, R91G, L107I, T122A; p2: Q6H, -10T, A11N; p24: M15I, P92A, E98D, S120N, G225S; p6: P30S, K33-; p7: L24I; pro: K70R; rev: R17S, T32A, R53S, S61N, R66G, S92F, P100S, S103P, V108G; tat: K29R, A58T, N64H, N78S, G79W; vif: L24I, G37N, K63T, R77K, K92R, H110Y, T151A, E185G; vpr: H45Y, H77Q; vpu: L4F, -5E, S8G, V10I, V21C, R41G, I43F, N55Y, D58E, V65M, L82V"}}}, {"name": "CRF18_cpx_NODE_0000005", "node_attrs": {"div": 0.10261999999999999, "clade_membership": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A654C", "A1142C", "-1783A", "A1839G", "A2407G", "G2431A", "A2989G", "A3279G", "G3344A", "A3808C", "A4243G", "A4246G", "G4708A", "A4735G", "T4835G", "C4868T", "C5038T", "A5059G", "A5099G", "T5239C", "A5352G", "T5467A", "-5601T", "T5603-", "C5615A", "A5621-", "A5622-", "A5788T", "C5789T", "-5791T", "G5794A", "A5795C", "C5802G", "C5806A", "-5809G", "-5810G", "-5811G", "C5834T", "G5915A", "A6251G", "A6263T", "G6280A", "A6324G", "A6329G", "C6457T", "A6569G", "T6769C", "C6807T", "-6966A", "C6967T", "-6998A", "-6999C", "C7141T", "G7677A", "G7726A", "A7777G", "C7843T", "T8159G", "A8189C", "A8337T", "A8446C", "G8528A", "T8685C", "A8762G", "A8794G", "A8801G", "G8914T", "A9095G", "A9099-"], "INT": ["E11D"], "RT-p51": ["K395R", "V417I"], "RT-p66": ["K395R", "V417I"], "gp120": ["S109N", "N111T", "T239A", "D294E"], "nef": ["Q35P", "F115L", "R191L"], "p24": ["V11I"], "rev": ["V104G", "D114A"], "tat": ["C31S", "Q35P"], "vif": ["F39V", "R41K", "K50R", "H83Q", "T151V", "K158R"], "vpr": ["I83V"], "vpu": ["K63T", "P76L"]}, "labels": {"aa": "INT: E11D; RT-p51: K395R, V417I; RT-p66: K395R, V417I; gp120: S109N, N111T, T239A, D294E; nef: Q35P, F115L, R191L; p24: V11I; rev: V104G, D114A; tat: C31S, Q35P; vif: F39V, R41K, K50R, H83Q, T151V, K158R; vpr: I83V; vpu: K63T, P76L"}}, "children": [{"name": "AY586541", "node_attrs": {"div": 0.12614999999999998, "accession": "AY586541", "clade_membership": {"value": "CRF18_cpx"}, "country": {"value": "CU"}, "date": {"value": 1999.0}, "Strain_name": {"value": "CU14"}, "LANL_subtype": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G301T", "A302-", "A303-", "A304-", "T305-", "A334G", "G413A", "A428G", "T435A", "A461C", "C471A", "T479C", "A509G", "C531T", "G534A", "G579A", "A653G", "C679A", "G687A", "A699G", "A705G", "G785A", "T827C", "A978C", "T1025G", "A1205G", "T1229C", "C1406T", "T1451C", "-1452A", "-1453G", "-1454A", "A1459G", "G1619A", "G1664A", "G1715A", "T1722C", "A1776G", "T1790C", "C1853T", "A1963G", "A2059G", "G2134A", "A2242G", "C2301A", "C2326T", "G2498A", "G2602A", "A2727G", "T2779C", "A2977G", "A3115G", "G3168A", "A3193G", "A3217G", "G3221A", "A3251G", "T3380C", "G3398C", "A3484G", "A3529G", "G3553A", "T3566G", "C3620A", "T3754C", "C4140T", "G4228A", "A4315T", "G4388T", "A4407G", "C4428T", "A4546T", "G4604A", "T4701G", "G4838A", "T4976G", "A5021G", "G5086A", "G5094A", "A5119G", "T5391C", "G5437C", "A5447T", "T5448A", "C5482T", "A5545G", "C5579T", "T5616C", "C5631T", "G5635A", "A5780G", "G5805A", "A5840T", "-5866C", "C5920A", "C5965G", "A6023G", "C6026T", "A6065G", "A6131C", "C6134T", "A6172G", "C6174A", "-6175C", "A6177C", "A6179T", "T6184C", "C6190T", "A6194T", "T6196C", "-6197G", "-6198A", "-6200A", "-6201G", "-6202C", "-6203A", "-6204A", "-6205T", "-6206A", "-6207G", "-6208C", "-6209A", "-6210C", "-6211T", "-6212A", "-6213A", "-6214A", "-6215T", "-6216G", "-6217G", "-6218G", "-6219C", "-6220T", "-6221A", "-6222A", "-6223T", "-6225A", "-6226G", "-6228C", "-6229T", "A6235G", "C6318A", "T6322G", "-6327G", "G6338A", "A6388T", "G6451A", "A6459C", "C6463G", "T6469C", "C6496T", "T6551C", "A6622C", "T6634C", "A6635C", "A6639G", "C6641T", "T6652C", "C6655T", "A6777C", "A6849T", "C6850G", "A6854T", "A6856T", "A6865T", "A6891C", "G6906C", "A6926T", "A6956T", "T6958C", "-6961G", "G6963A", "A6992-", "-6996G", "-6997A", "G7018C", "T7029-", "A7032T", "G7040A", "G7044T", "A7055C", "A7057G", "A7090C", "G7091A", "T7107G", "A7126G", "A7140G", "T7142C", "T7143A", "T7146G", "T7147G", "A7148G", "A7152T", "C7155T", "T7156C", "A7157G", "G7162T", "A7208G", "G7212A", "G7237A", "C7264T", "T7267C", "G7275A", "C7313A", "T7314G", "A7315G", "G7317A", "T7329C", "T7335G", "G7477A", "A7629G", "C7688A", "A7689G", "A7690C", "G7717C", "A7725C", "C7792T", "T7852G", "G7857A", "T7888A", "T7907A", "T7912C", "G7915T", "T7918C", "G7942A", "C7949G", "C8005T", "G8019A", "G8098A", "C8103T", "G8130A", "G8267T", "A8269G", "A8275G", "G8321A", "A8424G", "A8425-", "A8426-", "G8427-", "A8440C", "C8454A", "G8464C", "T8466A", "A8484C", "C8499T", "T8507C", "C8509G", "T8511C", "G8513A", "G8534T", "G8590C", "C8702T", "A8739G", "T8867C", "T8887A", "G8917A", "T8923G", "A8935T", "C9108T"], "INT": ["T122I", "A205S", "K211R", "T218I", "G277S"], "RT-p51": ["T69N", "V135I", "K211R", "R358K", "A376T", "T386A", "A435P"], "RT-p66": ["T69N", "V135I", "K211R", "R358K", "A376T", "T386A", "A435P", "T491A", "Q509K"], "gp120": ["S37R", "T57A", "N71D", "K93Q", "T107N", "T112C", "N113D", "T115N", "-116S", "-117T", "-118K", "-119W", "-120A", "-121N", "-122E", "-123A", "-124M", "P155Q", "I156M", "-158R", "N159S", "-160D", "N202T", "K261P", "K262R", "P263S", "K307G", "K308T", "E316K", "K334Y", "H346P", "G351A", "N358Y", "-369K", "T435N", "E436V", "N437T", "R452G", "S453N"], "gp41": ["L4R", "G5E", "L9P", "F11C", "N109S", "S125N", "Q129S", "Q141P", "R185K", "S202T", "L204F", "P216A", "S239N", "A267V", "W286G", "I296L", "V322L", "A340T", "Q345L"], "nef": ["K28G", "G29A", "A30E", "E33A", "Q38N", "G41A", "S42T", "T48P", "P53S", "A56G", "W57R", "E64D", "G83A", "Q104K", "I133V", "M182K", "I194R", "Q198L"], "p17": ["L34I", "E42D", "L46I", "P66S", "A67T", "V82I", "T115K", "A118T", "T122A", "S124G"], "p2": ["N9H", "-10R", "A11S"], "p24": ["I83L"], "p6": ["K33E"], "pro": ["K14R"], "rev": ["T34S", "R53C", "D84N", "V102I"], "tat": ["A21P", "N24I", "T57A", "D80E"], "vif": ["D61E", "S130R", "R167K", "A170T", "Q178R"], "vpr": ["S96P"], "vpu": ["V10I", "D58G", "Y78F"]}, "labels": {"aa": "INT: T122I, A205S, K211R, T218I, G277S; RT-p51: T69N, V135I, K211R, R358K, A376T, T386A, A435P; RT-p66: T69N, V135I, K211R, R358K, A376T, T386A, A435P, T491A, Q509K; gp120: S37R, T57A, N71D, K93Q, T107N, T112C, N113D, T115N, -116S, -117T, -118K, -119W, -120A, -121N, -122E, -123A, -124M, P155Q, I156M, -158R, N159S, -160D, N202T, K261P, K262R, P263S, K307G, K308T, E316K, K334Y, H346P, G351A, N358Y, -369K, T435N, E436V, N437T, R452G, S453N; gp41: L4R, G5E, L9P, F11C, N109S, S125N, Q129S, Q141P, R185K, S202T, L204F, P216A, S239N, A267V, W286G, I296L, V322L, A340T, Q345L; nef: K28G, G29A, A30E, E33A, Q38N, G41A, S42T, T48P, P53S, A56G, W57R, E64D, G83A, Q104K, I133V, M182K, I194R, Q198L; p17: L34I, E42D, L46I, P66S, A67T, V82I, T115K, A118T, T122A, S124G; p2: N9H, -10R, A11S; p24: I83L; p6: K33E; pro: K14R; rev: T34S, R53C, D84N, V102I; tat: A21P, N24I, T57A, D80E; vif: D61E, S130R, R167K, A170T, Q178R; vpr: S96P; vpu: V10I, D58G, Y78F"}}}, {"name": "AY894993", "node_attrs": {"div": 0.13230999999999998, "accession": "AY894993", "clade_membership": {"value": "CRF18_cpx"}, "country": {"value": "CU"}, "date": {"value": 1999.0}, "Strain_name": {"value": "CU68"}, "LANL_subtype": {"value": "CRF18_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A263G", "A412G", "A437G", "G452A", "C473T", "A497G", "A521T", "T525A", "A581G", "A605G", "A676G", "G677A", "C713T", "G716A", "G776A", "C830T", "G866A", "G987C", "T988C", "A992G", "A1002G", "C1005G", "A1073G", "A1151G", "G1271A", "G1301A", "G1354C", "T1451G", "-1455G", "-1456C", "-1457C", "C1460T", "A1461G", "A1492C", "A1495G", "G1498A", "G1562A", "A1688G", "A1733-", "G1734-", "A1735-", "G1736A", "G1737A", "A1740T", "T1741A", "A1742C", "G1743A", "C1744T", "C1745A", "-1746G", "-1747C", "-1748C", "A1770C", "G1772A", "T1794C", "C1828T", "A1832-", "C1833-", "G1835A", "G1845A", "A1990G", "A2007G", "A2069G", "T2080C", "T2095A", "C2149G", "G2328C", "A2519G", "C2605T", "A2722G", "C2740T", "A2815G", "G2833A", "C2845T", "A2925G", "G2950A", "C2975A", "G3010A", "T3040C", "C3067A", "G3094A", "A3192G", "A3196G", "A3205G", "C3223T", "G3340T", "A3364G", "C3399A", "G3427A", "G3477A", "T3566A", "A3607G", "C3763T", "C3823T", "C3908A", "T4039C", "C4079T", "A4181G", "T4276C", "A4284G", "G4573A", "G4677A", "T4701A", "G4769T", "A4860G", "G4870A", "G4896A", "A4901T", "G4935A", "A5155G", "C5445T", "T5451C", "A5574G", "T5582C", "T5616A", "T5617A", "A5629C", "G5630T", "A5711G", "A5712G", "A5717G", "A5720G", "G5739T", "T5778A", "G5800A", "-5866A", "A6022G", "A6030C", "A6044T", "A6158C", "A6164T", "-6175G", "A6176G", "A6177G", "G6180A", "A6185G", "A6186C", "T6187C", "C6192A", "T6193C", "T6199-", "G6224-", "G6227-", "A6230-", "T6231-", "G6232-", "A6234C", "G6284A", "A6285G", "T6328-", "A6330G", "A6333C", "G6336-", "T6337-", "G6339T", "T6340G", "T6348-", "A6349-", "C6396A", "G6442A", "A6458T", "A6459T", "C6461T", "C6463T", "A6478T", "G6479C", "G6480C", "G6481C", "A6616G", "C6636A", "A6637G", "A6647C", "A6649C", "G6705C", "T6733A", "A6754G", "G6773A", "G6774A", "G6781C", "C6790A", "C6797A", "C6799A", "A6800G", "C6810T", "C6850A", "A6900T", "A6957G", "-6961C", "T6964G", "-6968A", "-6969A", "-6970T", "-6971A", "-6972C", "-6973C", "-6974A", "-6975G", "-6976A", "-6977G", "-6978A", "-6979T", "-6980A", "-6981G", "-6982G", "-6983C", "-6984C", "-6985A", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "-6991C", "-6993C", "-6994A", "A7000C", "C7087A", "T7106G", "T7153G", "-7154T", "C7158T", "C7264G", "A7265G", "C7266A", "A7269G", "T7284A", "T7287G", "G7289-", "G7290-", "T7309G", "G7310-", "G7322T", "A7339G", "T7406G", "A7471G", "T7489A", "A7492-", "C7605T", "C7633A", "A7634G", "T7642A", "A7669C", "A7691C", "A7701G", "C7747A", "G7759T", "A7782G", "A7834G", "T7852A", "T7872C", "C7874A", "T7913C", "T7918G", "T7921G", "C7934A", "C7951A", "C7960G", "A7972G", "G7973C", "G7976A", "C7984A", "G8006-", "T8007-", "G8008-", "C8009-", "G8010-", "A8011-", "T8012G", "T8122G", "C8123T", "A8152G", "C8168G", "G8196A", "T8206C", "T8223C", "C8351A", "A8370G", "A8409G", "C8456G", "A8459G", "A8465G", "A8476C", "G8479A", "C8491A", "G8555C", "G8558A", "C8568G", "T8594A", "T8597G", "C8600T", "T8607C", "T8608A", "T8640G", "A8647T", "C8648T", "A8652T", "A8653G", "C8705G", "C8707T", "A8722C", "A8729C", "G8730A", "A8735C", "G8736A", "A8738G", "T8786A", "A8797C", "G8848C", "G8852T", "G8870A", "T8903C", "A8922C", "G8936A", "A8954G", "G8955A", "C9083T", "T9094G", "T9097A", "-9099T"], "INT": ["L45I", "T136A", "E170G"], "RT-p51": ["R78T", "I142V", "K277R", "P294T", "D324E", "K366R", "E415D", "A435E"], "RT-p66": ["R78T", "I142V", "K277R", "P294T", "D324E", "K366R", "E415D", "A435E", "R461K"], "gp120": ["D4E", "I56M", "E59A", "N64Y", "N102H", "T104S", "T110N", "T111A", "K127-", "E144R", "I166-", "N167-", "T181N", "N202F", "Q203Y", "G209P", "K265H", "-282A", "G284-", "E309D", "D312E", "H315K", "V332E", "N349I", "-368S", "-372N", "-377R", "-378P", "-381T", "-383N", "-384N", "S411R", "T435I", "-438V", "-439T", "T471D", "K472R", "K474-"], "gp41": ["G3-"], "nef": ["I10V", "T23A", "-31E", "N45T", "S46N", "A50D", "R71S", "L76V", "F85L", "F89H", "L100V", "Y102F", "Q104W", "P122L", "Y127S", "G130R", "G132R", "E152A", "C169S", "Q170H", "I194L", "D205N"], "p17": ["K26R", "E62D", "L64I", "K114R"], "p2": ["N9Q", "-12N", "I13V"], "p24": ["M15I", "V86P", "I91V", "P92A", "E98D", "G208A"], "p6": ["E19K", "E20Y", "K31Q", "E32G"], "p7": ["Q9P", "K10R", "R11K"], "pro": ["T12-"], "rev": ["K20R", "Y23H", "P29H", "T32A", "R38G", "R42A", "R43K", "A54S", "I55-", "S56-", "S92V", "S107C"], "tat": ["L68P", "I69T", "N78S", "P81Q", "P84R"], "vif": ["V31I", "V39I", "K92E", "R95K", "D104N", "Q105H", "E117K", "N190S"], "vpu": ["D3E", "L4I", "S8L", "K35R", "K37R", "K38R", "E44D", "S57R", "V65M"]}, "labels": {"aa": "INT: L45I, T136A, E170G; RT-p51: R78T, I142V, K277R, P294T, D324E, K366R, E415D, A435E; RT-p66: R78T, I142V, K277R, P294T, D324E, K366R, E415D, A435E, R461K; gp120: D4E, I56M, E59A, N64Y, N102H, T104S, T110N, T111A, K127-, E144R, I166-, N167-, T181N, N202F, Q203Y, G209P, K265H, -282A, G284-, E309D, D312E, H315K, V332E, N349I, -368S, -372N, -377R, -378P, -381T, -383N, -384N, S411R, T435I, -438V, -439T, T471D, K472R, K474-; gp41: G3-; nef: I10V, T23A, -31E, N45T, S46N, A50D, R71S, L76V, F85L, F89H, L100V, Y102F, Q104W, P122L, Y127S, G130R, G132R, E152A, C169S, Q170H, I194L, D205N; p17: K26R, E62D, L64I, K114R; p2: N9Q, -12N, I13V; p24: M15I, V86P, I91V, P92A, E98D, G208A; p6: E19K, E20Y, K31Q, E32G; p7: Q9P, K10R, R11K; pro: T12-; rev: K20R, Y23H, P29H, T32A, R38G, R42A, R43K, A54S, I55-, S56-, S92V, S107C; tat: L68P, I69T, N78S, P81Q, P84R; vif: V31I, V39I, K92E, R95K, D104N, Q105H, E117K, N190S; vpu: D3E, L4I, S8L, K35R, K37R, K38R, E44D, S57R, V65M"}}}]}]}]}]}]}, {"name": "NODE_0000466", "node_attrs": {"div": 0.042219999999999994, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A152-", "A216G", "-217A", "C722T", "A1089G", "C1350G", "C1447A", "T1682C", "G1835A", "A1849G", "A1855G", "A1907G", "C1979G", 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"G7702T", "G7862A", "G7942A", "C7949G", "A7962G", "G7997A", "A7998C", "C8005G", "G8055A", "C8120A", "T8121C", "G8144A", "C8168G", "G8170A", "A8219G", "G8242A", "T8243G", "G8245A", "G8255A", "T8268C", "G8280T", "A8604G", "T8843C", "G8873A", "A8979C"], "RT-p51": ["D250E", "I329V", "Q334L", "T377L"], "RT-p66": ["D250E", "I329V", "Q334L", "T377L", "R461K", "S468T"], "gp120": ["S3T", "I126M", "K323E", "N327-", "G443T", "K462E", "K472R"], "gp41": ["L4I", "R46K", "D121E", "S125D", "V187I", "E220G", "D232T", "L273T", "A281T", "W286G", "L289A", "L290Q", "T306A", "W314G", "V318I", "V322A", "C326F"], "nef": ["P53A", "D54A"], "p24": ["S120G"], "pro": ["V13I", "N37D", "Q61E", "C67E"], "rev": ["T34S", "R50N", "H53D", "L78I", "T91N", "G99D", "V104G", "S107C"], "tat": ["K24Q", "K71E", "G79R", "N80K", "K85E"], "vif": ["G37R", "F39L", "K63E", "N186S", "Q187H"], "vpu": ["E5Q", "K35R", "-69V", "-70E", "-71M", "-72G", "-73P", "-74H", "-75D", "P76L", "V78N", "D80N", "N81D"]}, "labels": {"aa": "RT-p51: D250E, I329V, Q334L, T377L; RT-p66: D250E, I329V, Q334L, T377L, R461K, S468T; gp120: S3T, I126M, K323E, N327-, G443T, K462E, K472R; gp41: L4I, R46K, D121E, S125D, V187I, E220G, D232T, L273T, A281T, W286G, L289A, L290Q, T306A, W314G, V318I, V322A, C326F; nef: P53A, D54A; p24: S120G; pro: V13I, N37D, Q61E, C67E; rev: T34S, R50N, H53D, L78I, T91N, G99D, V104G, S107C; tat: K24Q, K71E, G79R, N80K, K85E; vif: G37R, F39L, K63E, N186S, Q187H; vpu: E5Q, K35R, -69V, -70E, -71M, -72G, -73P, -74H, -75D, P76L, V78N, D80N, N81D"}}, "children": [{"name": "NODE_0000467", "node_attrs": {"div": 0.06291, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G256A", "A265G", "-304A", "-305A", "C426A", "A675G", "G791A", "C1403T", "G1430A", "-1458A", "G1760A", "G1781A", "A1784G", "A1839G", "G1976A", "A1981T", "A2075C", "C2615A", "G2693A", "T2708C", "A2846G", "G2847A", "T3002C", "C3056T", "T3059G", "C3067A", "T3139C", "A3200G", "G3391A", "A3442G", "C3542T", "G3667A", "A3684G", "A3775G", "A3808G", "A3952G", "A4176G", "G4228A", "C4412T", "A4721C", "G4727T", "G4838A", "A4937C", "A4988C", "C5050A", "C5062G", "G5086A", "C5095T", "G5225A", "G5226A", "T5327C", "A5336C", "A5375G", "C5412T", "A5444C", "G5482A", "T5484G", "A5499G", "A5555C", "C5556T", "G5599A", "A5656T", "T5658C", "C5769T", "G5800-", "T5807A", "G5915A", "T5917G", "C5924T", "A5965C", "C5989T", "C6007A", "A6065G", "T6101G", "C6116T", "G6133A", "A6177C", "-6180A", "-6189C", "-6194A", "-6196T", "-6200A", "G6224-", "A6229G", "C6256T", "T6306A", "T6307A", "G6339A", "G6345T", "G6346T", "C6369T", "A6394G", "C6397T", "G6401C", "G6403A", "T6427C", "G6451A", "G6481A", "C6499T", "T6551C", "C6559T", "C6563A", "G6577A", "G6631A", "C6641A", "A6647G", "T6655G", "A6668G", "A6669C", "C6692G", "-6697A", "-6698C", "-6700C", "-6701A", "-6702T", "C6717T", "A6718G", "T6719C", "A6734G", "G6743A", "G6779A", "A6799T", "T6815C", "T6856A", "T6860G", "C6862A", "C6885T", "A6886G", "G6894C", "C6925T", "C7024T", "C7045A", "G7072A", "A7089C", "T7105C", "C7124T", "A7136C", "A7138T", "T7144G", "T7153C", "-7162T", "A7246G", "G7366A", "A7402G", "A7492G", "A7590C", "C7688G", "T7715G", "G7717A", "G7720A", "G7790A", "T7825C", "T7877G", "A7941C", "G7944C", "C8080A", "A8093G", "C8145T", "T8182G", "T8257C", "C8293T", "C8320T", "G8354-", "C8369-", "A8402G", "A8405G", "A8409G", "C8412G", "A8441G", "A8459G", "A8465G", "T8495A", "T8504C", "G8526A", "A8527C", "G8528A", "T8567G", "T8585C", "C8640T", "C8699T", "T8711C", "C8751T", "T8770A", "C8948T", "C8966A", "G8974T", "A8980G", "G9049A"], "INT": ["N134G"], "RT-p51": ["A200T", "S251D", "P321S", "S322A", "T369A"], "RT-p66": ["A200T", "S251D", "P321S", "S322A", "T369A", "H483Y", "K530R"], "gp120": ["D4E", "D21K", "N71D", "L83V", "-114S", "-115S", "-116S", "L151Q", "R164I", "T172V", "E183Q", "N204K", "L237I", "P263T", "N267K", "N272A", "S278G", "F289L", "D297N", "E309D", "Q315R", "K319A", "I332V", "N334K", "S336A", "T344M", "S347T", "T366S", "-368N", "M406I", "Q412A", "N418T", "-436N"], "gp41": ["N96T", "D113E", "Q129E", "S138A", "S192A", "Q213P", "R214T", "P216A", "D230G", "I264V", "R276H", "T281I"], "nef": ["I20M", "T23A", "E62T", "F143Y"], "p17": ["L31M"], "p2": ["-10T", "A11N"], "pro": ["K14R", "D60N", "E61D", "I93L"], "rev": ["T14L", "E32N", "H82R", "A108S", "S112A"], "tat": ["N23T", "Q60P", "R78Q"], "vif": ["E45D", "E117D", "E134D", "T155K", "T159R"], "vpr": ["N28S", "G41N", "Q77H"], "vpu": ["I17F", "I18L", "F27Y", "E58D"]}, "labels": {"aa": "INT: N134G; RT-p51: A200T, S251D, P321S, S322A, T369A; RT-p66: A200T, S251D, P321S, S322A, T369A, H483Y, K530R; gp120: D4E, D21K, N71D, L83V, -114S, -115S, -116S, L151Q, R164I, T172V, E183Q, N204K, L237I, P263T, N267K, N272A, S278G, F289L, D297N, E309D, Q315R, K319A, I332V, N334K, S336A, T344M, S347T, T366S, -368N, M406I, Q412A, N418T, -436N; gp41: N96T, D113E, Q129E, S138A, S192A, Q213P, R214T, P216A, D230G, I264V, R276H, T281I; nef: I20M, T23A, E62T, F143Y; p17: L31M; p2: -10T, A11N; pro: K14R, D60N, E61D, I93L; rev: T14L, E32N, H82R, A108S, S112A; tat: N23T, Q60P, R78Q; vif: E45D, E117D, E134D, T155K, T159R; vpr: N28S, G41N, Q77H; vpu: I17F, I18L, F27Y, E58D"}}, "children": [{"name": "results/subtype_trees/CRF49_cpx.nwk", "node_attrs": {"div": 0.08936, "clade_membership": {"value": "CRF49_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G112A", "T159A", "A161G", "A301G", "A386G", "A417C", "T467C", "A562G", "A697C", "A715G", "G716T", "T734C", "C767T", "A776G", "T782A", "A803G", "C827T", "T851C", "C897T", "A899G", "G908T", "G911A", "C974T", "A978T", "A989C", "G1016A", "C1094T", "T1214C", "A1217G", "C1362T", "T1385C", "C1439T", "A1454C", "G1589A", "A1607G", "T1616A", "-1775C", "T1828A", "C1831T", "A1834C", "A1927G", "A1994G", "A2023G", "T2087C", "G2134A", "C2266T", "C2296T", "C2335T", "C2353T", "C2356T", "A2386T", "A2398G", "C2420T", "G2422A", "A2437C", "G2462A", "C2464T", "T2497C", "A2500T", "C2503T", "C2635A", "G2686A", "A2727G", "G2728A", "T2770C", "A2788G", "A2818G", "G2830A", "A2847C", "G2872A", "G2878A", "C2930T", "C2953A", "T3118C", "C3178T", "A3196G", "A3208G", "G3292A", "G3316A", "A3409G", "A3448G", "A3460T", "A3490G", "T3496A", "A3508G", "G3520A", "A3529G", "A3535T", "T3541C", "T3550C", "C3577T", "A4306G", "C4428T", "A4492C", "G4856A", "C4919T", "A5042C", "C5052A", "G5173A", "G5463A", "G5538A", "C5579T", "A5581G", "C5585A", "T5600A", "A5659T", "G5699A", "T5707G", "A5790-", "-5810T", "A5865G", "T5911G", "T5932C", "A5964G", "G6055A", "C6067T", "C6134T", "G6167A", "C6241T", "G6260-", "A6261-", "A6262-", "A6263-", "T6264-", "A6266G", "A6270G", "G6303A", "C6305G", "A6332T", "A6338G", "T6340G", "A6350G", "T6365A", "T6382A", "A6449C", "G6463A", "A6475G", "A6616G", "C6660T", "-6699A", "T6787C", "T6794C", "C6824T", "T6849A", "C6850A", "T6863A", "C6938T", "-6971A", "-6973T", "-6974G", "-6976A", "-6989A", "-6991T", "-6994T", "A7033G", "C7087T", "A7126G", "C7153A", "-7165A", "C7170T", "A7234G", "C7250T", "G7453A", "A7532C", "C7574T", "T7591A", "T7642G", "T7656G", "C7658G", "A7666G", "A7676G", "C7684T", "A7710G", "A7756T", "C7762T", "T7921G", "G8019A", "C8065T", "A8152G", "T8169C", "A8170C", "G8173A", "C8183A", "A8284G", "T8287G", "-8354C", "-8369T", "A8426G", "A8453G", "G8487C", "-8490A", "T8594C"], "INT": ["T218I"], "RT-p51": ["K211R"], "RT-p66": ["K211R", "A446S", "Q480H"], "gp120": ["E4G", "D19E", "K37G", "M67I", "-109A", "-118T", "E136G", "I137-", "D139K", "K141-", "K142-", "Q151E", "N160S", "S162E", "I166V", "S171T", "K199Q", "T269V", "D294-", "H324Y", "V332E", "-370E", "-371T", "-372N", "-373S", "-374T", "-433T", "T439I"], "gp41": ["K77Q", "L91F", "I118R", "N133S", "E136G", "E143D", "F206L", "Q294K"], "nef": ["K4N", "A49P"], "p17": ["K28Q", "K76R", "D121A", "Q127S"], "p2": ["T8Q"], "p6": ["S51L", "Q52P"], "pro": ["I66V"], "rev": ["S8N", "Q24K", "L73F", "I102V", "S108P", "V109I", "A112E"], "tat": ["P68L", "I69V", "P70Q"], "vif": ["D61E", "P156T"], "vpu": ["R31K", "L34V", "E62D"]}, "labels": {"aa": "INT: T218I; RT-p51: K211R; RT-p66: K211R, A446S, Q480H; gp120: E4G, D19E, K37G, M67I, -109A, -118T, E136G, I137-, D139K, K141-, K142-, Q151E, N160S, S162E, I166V, S171T, K199Q, T269V, D294-, H324Y, V332E, -370E, -371T, -372N, -373S, -374T, -433T, T439I; gp41: K77Q, L91F, I118R, N133S, E136G, E143D, F206L, Q294K; nef: K4N, A49P; p17: K28Q, K76R, D121A, Q127S; p2: T8Q; p6: S51L, Q52P; pro: I66V; rev: S8N, Q24K, L73F, I102V, S108P, V109I, A112E; tat: P68L, I69V, P70Q; vif: D61E, P156T; vpu: R31K, L34V, E62D", "clade": "CRF49_cpx"}}, "children": [{"name": "AF192135", "node_attrs": {"div": 0.14645, "accession": "AF192135", "clade_membership": {"value": "CRF49_cpx"}, "country": {"value": "BW"}, "date": {"value": 1998.0}, "Strain_name": {"value": "BW2117"}, "LANL_subtype": {"value": "CRF49_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T91G", "C93G", "T94G", "T95C", "A101C", "T103-", "G104-", "T105-", "G106-", "T107-", "C111-", "A112-", "T113-", "C114-", "T115-", "G116-", "T117-", "T118-", "G119-", "T120-", "G121-", "T122-", "G123-", "A124-", "C125-", "T126-", "C127-", "T128-", "G129-", "G130-", "T131-", "A132-", "A133-", "C134-", "T135-", "A136-", "G137-", "A138-", "G139-", "A140-", "T141-", "C142-", "C143-", "C144-", "T145-", "C146-", "A147-", "G148-", "A149-", "C150-", "C151-", "C153-", "T154-", "C155-", "T156-", "A157-", "G158-", "A159-", "C160-", "G161-", "G162-", "T163-", "G164-", "T165-", "A168-", "A169-", "A170-", "A171-", "T201C", "A518G", "C531T", "A548G", "G675A", "A678G", "-714A", "A764G", "C773T", "A774G", "A809G", "T884C", "C947T", "A1025G", "G1089A", "T1100C", "A1115C", "G1199A", "A1205G", "A1263T", "G1271T", "G1339A", "A1367G", "A1382G", "G1398-", "A1412G", "G1413C", "G1419A", "G1424A", "A1448G", "-1452A", "-1459A", "G1476A", "G1562A", "T1574C", "C1598T", "G1664A", "C1730T", "T1741C", "A1760G", "C1767G", "C1768G", "A1841G", "G1845C", "C1853G", "G1855A", "G1858A", "A1906G", "T1909G", "T1910C", "T1986A", "A2012G", "G2027A", "G2042A", "G2059A", "C2062T", "T2080G", "G2111A", "A2112C", "A2128T", "A2131G", "A2154G", "A2160G", "T2195C", "A2197G", "G2208T", "A2395G", "C2437T", "C2449A", "T2476C", "A2498G", "A2515G", "G2539A", "A2579T", "G2580A", "A2612G", "A2617C", "T2632G", "G2704A", "C2708T", "T2737C", "T2776C", "G2902A", "A2918C", "A2925G", "A2929C", "T2935C", "A2937G", "A3001G", "C3002T", "C3100T", "G3151A", "A3170G", "A3238G", "C3307A", "C3359T", "A3430G", "G3431T", "G3439A", "A3457G", "A3477G", "G3491A", "A3511C", "A3574T", "T3628C", "A3651G", "T3652C", "C3665G", "A3676G", "G3685A", "T3742C", "C3751T", "G3796A", "T3829A", "G3859A", "C3908T", "A3931G", "A3989G", "C3995A", "G3997A", "A4027G", "A4036G", "A4076C", "A4078G", "A4107C", "T4117C", "C4129T", "G4156A", "A4178G", "C4181A", "A4182G", "A4183G", "G4186A", "A4195G", "C4201A", "A4231G", "A4243G", "A4270T", "A4273G", "T4276A", "A4285G", "A4384G", "T4412C", "A4498G", "A4555G", "G4582A", "G4642A", "A4643T", "T4652A", "C4665T", "T4674C", "G4689A", "G4696A", "A4697G", "T4701C", "T4712C", "G4726A", "C4757T", "G4766A", "G4767A", "A4768G", "A4773G", "C4803A", "T4826C", "T4832C", "G4839C", "G4859A", "A4871G", "C4889G", "G4923A", "C4937A", "G4981T", "G4982T", "C4988A", "C5038A", "T5043A", "A5046C", "A5055G", "A5085C", "A5122G", "T5147C", "A5187G", "C5213A", "A5225G", "A5230C", "T5239C", "A5282C", "T5292C", "C5333T", "G5375A", "A5447C", "G5448A", "A5471T", "A5482G", "G5561A", "A5607G", "T5612G", "C5639G", "T5641G", "T5653A", "A5702G", "T5731A", "A5746G", "A5751G", "C5763T", "-5790T", "-5791G", "-5792A", "-5793T", "G5803C", "A5805C", "G5808A", "-5809C", "-5811T", "-5816A", "-5819T", "T5850C", "T5870A", "A5896C", "G5939A", "G5972A", "A6061G", "T6085G", "C6160T", "T6171C", "A6174C", "-6175G", "C6177G", "A6186C", "C6189A", "C6190T", "-6195A", "A6197T", "-6198G", "-6201C", "-6202T", "-6203G", "-6204T", "-6205T", "-6206A", "-6207G", "-6208T", "A6236G", "C6238G", "T6242C", "C6243A", "A6253-", "A6254-", "C6255-", "T6256-", "A6257-", "C6258-", "-6260A", "-6261C", "-6262T", "-6263G", "-6264G", "A6273G", "A6276G", "C6289T", "T6315C", "C6318T", "A6327G", "T6355G", "T6400C", "G6532A", "A6553G", "T6559G", "G6578A", "C6601T", "G6605A", "A6628T", "A6640T", "A6659G", "C6667T", "T6702C", "A6703G", "T6733A", "A6737G", "A6743G", "A6767G", "G6773A", "C6777A", "A6778G", "A6781C", "A6786C", "A6788G", "T6793C", "G6806A", "G6819A", "A6820G", "A6840C", "A6848G", "A6854C", "C6864G", "A6865C", "G6867C", "T6916C", "A6935G", "A6936G", "G6948A", "T6949A", "A6950T", "T6952A", "G6954T", "G6955A", "-6956T", "-6957T", "-6958G", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964T", "-6965A", "-6966A", "-6967T", "-6968G", "-6969A", "-6970G", "-6972C", "G6974A", "-6975C", "-6977G", "-6978A", "-6979T", "-6980G", "-6981G", "-6982T", "-6983G", "-6984C", "-6985A", "C7019A", "A7148T", "A7152C", "A7161G", "T7162A", "C7171T", "G7176C", "G7187A", "G7190A", "A7216G", "A7237G", "G7238A", "A7240G", "T7250A", "A7290G", "G7309A", "G7322A", "G7343A", "C7411T", "A7453T", "T7462C", "A7470G", "A7504G", "G7506A", "G7508A", "G7599A", "G7628A", "G7642A", "A7660C", "T7681G", "A7690C", "T7692C", "A7701G", "A7722G", "G7729A", "A7732C", "G7754T", "T7783C", "A7791G", "A7818G", "G7873A", "C7950T", "G7995A", "C8044A", "G8050A", "A8073G", "T8094C", "A8119C", "A8184G", "T8215C", "G8219A", "C8223T", "G8231A", "G8244C", "G8264A", "T8278C", "A8303G", "G8304T", "A8342-", "G8349A", "T8366C", "G8373A", "T8384G", "G8385C", "A8388G", "G8404A", "A8446G", "C8503A", "G8516A", "A8526G", "G8534T", "C8552T", "G8554A", "A8555G", "T8558C", "G8567T", "G8604A", "G8678A", "C8688A", "A8726G", "T8740C", "A8746T", "A8750T", "C8756T", "C8775T", "G8807A", "C8832T", "T8835C", "A8844C", "A8846G", "G8864A", "A8873C", "T8903C", "C8906A", "A8922T", "C8928A", "G8933A", "C8934A", "T8935A", "A8969C", "A8970G", "G8971C", "C8979T", "T9012G", "T9040C", "A9042G", "C9047A", "A9095T", "C9102A", "A9106G", "C9108-", "T9115C", "C9129G", "T9134A"], "INT": ["N18K", "I72V", "L74I", "I84M", "I101L", "K111T", "I135V", "Q136R", "D167E", "I203M"], "RT-p51": ["E6T", "K11N", "K20R", "K22R", "C38F", "D123N", "I135V", "S162Y", "T173A", "K174N", "D251A", "K275Q", "K277R", "Q278H", "K281R", "D324E", "S359A"], "RT-p66": ["E6T", "K11N", "K20R", "K22R", "C38F", "D123N", "I135V", "S162Y", "T173A", "K174N", "D251A", "K275Q", "K277R", "Q278H", "K281R", "D324E", "S359A", "K461R", "V466I", "T468S", "N519S", "Q524E"], "gp120": ["L6M", "D29N", "V40I", "N57I", "H77Q", "-111V", "-112S", "S114T", "S115G", "S116C", "-117T", "T118N", "-119N", "-120N", "-121C", "-122T", "-123V", "-124S", "N128E", "S130H", "T135G", "-137G", "K139R", "V154A", "P155L", "N157K", "N158D", "N159R", "S160P", "E162N", "N167K", "D251N", "E262N", "I281T", "L289V", "Y290V", "A291-", "T292-", "G293-", "I295-", "N297D", "I305V", "G307R", "T308K", "D309N", "N311T", "N312D", "R315H", "A318T", "R322K", "K329T", "K334Q", "G338A", "K361G", "S365K", "W367L", "N368L", "N372S", "S373N", "-375D", "-376G", "-377A", "-378N", "-379N", "-380T", "P389T", "N432Y", "N436T", "R441T", "G445R", "D446N", "E462K", "L466I", "E479G"], "gp41": ["V7M", "A14T", "K56R", "R68K", "V69I", "W99*", "D109N", "E119D", "N126K", "E129D", "I130T", "N140S", "A151S", "D163S", "K172R", "A216V", "R231K", "D247E", "Y257C", "V264A", "E272D", "H276R", "Q290L", "K294R", "A306T", "T307I", "A310T", "G314A", "V321I", "R334V", "L340F"], "nef": ["G3S", "V11I", "E15Q", "I16V", "R21K", "Q35R", "A50T", "A54D", "E64A", "R71K", "H116N", "I133T", "Y135F", "R151K", "I168L", "E177D", "I194L", "L198K"], "p17": ["I61M", "P66S", "T115A"], "p24": ["I15V", "G120S", "E128D", "T178S", "E180D", "R203K", "G223-", "A228P", "V230I"], "p6": ["I21T", "P30G"], "p7": ["G4S"], "pro": ["I15V", "G16A", "L19V", "I36M", "D37E", "L63H", "I72V", "V77I", "V82I"], "rev": ["V16I", "A68T", "N91H"], "tat": ["Q24P", "Y32F", "S62N", "P81S"], "vif": ["R19N", "N22K", "H27Y", "Y30H", "A35T", "R37K", "R47N", "E61S", "H73N", "V85L", "D113N", "D117E", "R132I", "D134E", "T151K", "L153I", "I154L", "K157E", "R167Q", "K179R"], "vpr": ["Y15H", "P37T", "N41D", "L42F", "I60L", "I63T"], "vpu": ["I2R", "A11G", "L12V", "F16I", "K32R", "L42I", "R47G", "V65H", "E66K"]}, "labels": {"aa": "INT: N18K, I72V, L74I, I84M, I101L, K111T, I135V, Q136R, D167E, I203M; RT-p51: E6T, K11N, K20R, K22R, C38F, D123N, I135V, S162Y, T173A, K174N, D251A, K275Q, K277R, Q278H, K281R, D324E, S359A; RT-p66: E6T, K11N, K20R, K22R, C38F, D123N, I135V, S162Y, T173A, K174N, D251A, K275Q, K277R, Q278H, K281R, D324E, S359A, K461R, V466I, T468S, N519S, Q524E; gp120: L6M, D29N, V40I, N57I, H77Q, -111V, -112S, S114T, S115G, S116C, -117T, T118N, -119N, -120N, -121C, -122T, -123V, -124S, N128E, S130H, T135G, -137G, K139R, V154A, P155L, N157K, N158D, N159R, S160P, E162N, N167K, D251N, E262N, I281T, L289V, Y290V, A291-, T292-, G293-, I295-, N297D, I305V, G307R, T308K, D309N, N311T, N312D, R315H, A318T, R322K, K329T, K334Q, G338A, K361G, S365K, W367L, N368L, N372S, S373N, -375D, -376G, -377A, -378N, -379N, -380T, P389T, N432Y, N436T, R441T, G445R, D446N, E462K, L466I, E479G; gp41: V7M, A14T, K56R, R68K, V69I, W99*, D109N, E119D, N126K, E129D, I130T, N140S, A151S, D163S, K172R, A216V, R231K, D247E, Y257C, V264A, E272D, H276R, Q290L, K294R, A306T, T307I, A310T, G314A, V321I, R334V, L340F; nef: G3S, V11I, E15Q, I16V, R21K, Q35R, A50T, A54D, E64A, R71K, H116N, I133T, Y135F, R151K, I168L, E177D, I194L, L198K; p17: I61M, P66S, T115A; p24: I15V, G120S, E128D, T178S, E180D, R203K, G223-, A228P, V230I; p6: I21T, P30G; p7: G4S; pro: I15V, G16A, L19V, I36M, D37E, L63H, I72V, V77I, V82I; rev: V16I, A68T, N91H; tat: Q24P, Y32F, S62N, P81S; vif: R19N, N22K, H27Y, Y30H, A35T, R37K, R47N, E61S, H73N, V85L, D113N, D117E, R132I, D134E, T151K, L153I, I154L, K157E, R167Q, K179R; vpr: Y15H, P37T, N41D, L42F, I60L, I63T; vpu: I2R, A11G, L12V, F16I, K32R, L42I, R47G, V65H, E66K"}}}, {"name": "CRF49_cpx_NODE_0000001", "node_attrs": {"div": 0.09744, "clade_membership": {"value": "CRF49_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-166A", "T227C", "C471A", "A676G", "A680G", "G709-", "G717A", "C872A", "G1085A", "T1322C", "A1418G", "A1586G", "G1687A", "A1715G", "A1794G", "A2389T", "A2665G", "A2677G", "A2755G", "A2869G", "A2875G", "G2950A", "C3171G", "C3359A", "A3361G", "A3391C", "A3643G", "G3664A", "C3712T", "A3736G", "C3751A", "T3755A", "C3756A", "T3850G", "T3865C", "A3901G", "G3925A", "T3991C", "C4015T", "T4024C", "G4060A", "T4074A", "A4105C", "C4132T", "A4219G", "T4234C", "C4426T", "G4459A", "A4474T", "C4534T", "A4543C", "A4561G", "A4564G", "G4573A", "T4585C", "A4608C", "A4684G", "A4694T", "T4706C", "C4715T", "T4727A", "A4737G", "C4761T", "T4769G", "A4774G", "C4786G", "C4800T", "G4802A", "T4805A", "G4835T", "A4861G", "G4865A", "A4871C", "A4901G", "T4907C", "T4932G", "G4949A", "G5062T", "T5073C", "G5082A", "C5091T", "A5134G", "A5140G", "G5143A", "C5168A", "T5171C", "G5179A", "T5182C", "A5186C", "T5188G", "T5197C", "T5203C", "C5237T", "C5397A", "C5663T", "T5836G", "T6024A", "-6175T", "T6196A", "-6198C", "-6221A", "-6222A", "-6224G", "-6226A", "A6265-", "A6306C", "A6333C", "A6547G", "A6712G", "C6797A", "T6932A", "-6972G", "G7198A", "A7241C", "G7244A", "A7252G", "C7267T", "A7279G", "G7459A", "A7589G", "A7701C", "A8032G", "C8033A", "C8092A", "G8130A", "C8294A", "T8320G", "T8321C", "T8607C"], "INT": ["D25E", "M50I", "F100Y", "D278A"], "gp120": ["E151A", "S360T", "I463L", "E464K"], "gp41": ["T96A", "R122N", "L244I", "H331N"], "nef": ["F89L"], "p17": ["L46I", "K114G", "V128I"], "p24": ["M118I", "A207V"], "p6": ["S3N", "T39A"], "rev": ["T62D", "R82S"], "tat": ["N7K", "V36I"], "vif": ["M8L", "K33R", "K36N", "L39F", "I51V", "E63R", "T67R", "H73Q", "Q83H", "K92R", "R95S", "S116A", "R159I", "V166I", "H183R", "E185G", "S186N"], "vpr": ["L22I", "S28Q", "H45Y"], "vpu": ["A19V", "L67M", "-68G", "V69-", "E70-", "W77G"]}, "labels": {"aa": "INT: D25E, M50I, F100Y, D278A; gp120: E151A, S360T, I463L, E464K; gp41: T96A, R122N, L244I, H331N; nef: F89L; p17: L46I, K114G, V128I; p24: M118I, A207V; p6: S3N, T39A; rev: T62D, R82S; tat: N7K, V36I; vif: M8L, K33R, K36N, L39F, I51V, E63R, T67R, H73Q, Q83H, K92R, R95S, S116A, R159I, V166I, H183R, E185G, S186N; vpr: L22I, S28Q, H45Y; vpu: A19V, L67M, -68G, V69-, E70-, W77G"}}, "children": [{"name": "HQ385478", "node_attrs": {"div": 0.12495, "accession": "HQ385478", "clade_membership": {"value": "CRF49_cpx"}, "country": {"value": "GM"}, "date": {"value": 1997.0}, "Strain_name": {"value": "N28353"}, "LANL_subtype": {"value": "CRF49_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-152A", "C160A", "A217G", "A412G", "G413A", "C435T", "G452A", "C476T", "G498A", "A521G", "A581G", "C603G", "G607A", "T655A", "G687A", "-709A", "-714A", "G776A", "G803A", "A866T", "C1040T", "T1055C", "C1060A", "A1067G", "A1176G", "G1192A", "C1351T", "G1443A", "C1446-", "A1447C", "T1451G", "-1452C", "-1455C", "-1456C", "-1457A", "A1458-", "G1493A", "G1508A", "C1535T", "A1622G", "G1673A", "G1725A", "A1740G", "T1741C", "T1787C", "C1826A", "G1845A", "G1846A", "A1903C", "T1909G", "G1912A", "C1985T", "T1986G", "G1999T", "T2024C", "T2369C", "A2407G", "A2416G", 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"G101D", "I128T", "Q136P", "R167K", "G182D"], "vpu": ["I2T", "V21A", "V34R", "R35K", "K38N", "R41K", "I43L", "S57D", "D58E", "D60E", "T61F", "D62P", "E63K", "-69P", "M71-", "G72-", "P73-"]}, "labels": {"aa": "INT: E11D, K14R, S24N, E256D, A265V; RT-p51: E122V, R211S, A322G, L422M, E432D; RT-p66: E122V, R211S, A322G, L422M, E432D, D460N, K476R, Y501H, S554N; gp120: G4E, N5D, K31N, A32S, I67V, K69E, -111S, -112A, S114A, S116N, -117I, -123K, -124V, M126R, T134N, G136-, K139G, -141M, -142R, K143I, E144D, K150E, N159S, T171S, P210L, I242V, E247K, A253T, E262H, A288V, -294E, D309Q, A318V, E323G, -326K, -327N, N328-, T330I, K334Q, I343L, K361N, N368S, -375G, -376E, -377T, -378N, I411T, N434S, N435T, N437K, R441T, D446N, M447I, K457R; gp41: Q29H, V38L, Q64H, F91L, S101V, E110Q, E113G, R118K, S133T, D143E, D163N, S165T, I177V, I193V, N195K, G221E, N251S, F263L, A306V, Q323R, A325I, F326L, R334T; nef: I10K, K39R, A50T, E64D, Y81F; p17: K26R, E55K, Q90E, R91K, I107K, A118T, S125N; p2: V7I, Q8-; p24: E45D, T110N, S149G, R154K; p6: G16R, I21A; pro: L10I, G16E, E35D, D37E, L63C, E67D; rev: E10A, R17K, I18L, G90R, E116K; tat: I36M, S46F, Y47H, N64T, L68I, E86K; vif: V65E, R67K, H80Q, I87L, R93S, G101D, I128T, Q136P, R167K, G182D; vpu: I2T, V21A, V34R, R35K, K38N, R41K, I43L, S57D, D58E, D60E, T61F, D62P, E63K, -69P, M71-, G72-, P73-"}}}, {"name": "CRF49_cpx_NODE_0000002", "node_attrs": {"div": 0.10287, "clade_membership": {"value": "CRF49_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T118G", "C379A", "G2473A", "A3985G", "A4693G", "A4695G", "C4721A", "C4857T", "C4976A", "G5289A", "G5484A", "T5491C", "G5587A", "G5673A", "T5727A", "-6201G", "-6204C", "-6205A", "-6206A", "-6207C", "-6208A", "-6218T", "A6353C", "A6382G", "A6648C", "A6701T", "T6766C", "A6935C", "-6957A", "-6958T", "-6959A", "-6960A", "-6962A", "-6964T", "A6976T", "-7007A", "-7008C", "-7009T", "C7084T", "G7256A", "T7630G", "A7732T", "T7774C", "A7790G", "A7918G", "A8429T", "A8432G"], "gp120": ["-105N", "N167H", "V269I", "I281L", "K361Q", "V468I"], "gp41": ["D109E"], "nef": ["S88G"], "tat": ["E71K"], "vif": ["N36S", "R37G", "D45E", "S130R"], "vpr": ["R62K"], "vpu": ["D40E"]}, "labels": {"aa": "gp120: -105N, N167H, V269I, I281L, K361Q, V468I; gp41: D109E; nef: S88G; tat: E71K; vif: N36S, R37G, D45E, S130R; vpr: R62K; vpu: D40E"}}, "children": [{"name": "HQ385479", "node_attrs": {"div": 0.13836, "accession": "HQ385479", "clade_membership": {"value": "CRF49_cpx"}, "country": {"value": "GM"}, "date": {"value": 2003.0}, "Strain_name": {"value": "N26677"}, "LANL_subtype": {"value": "CRF49_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A133G", "-152A", "T201C", "G206A", "A217G", "G223A", "C227A", "G354A", "G378A", "A426C", "A471G", "G542A", "A617G", "A632G", "T635G", "T662G", "-709T", "-714A", "C719T", "T728C", "G747A", "G771C", "C851T", "A860G", "A905T", "T908G", "T978G", "T1182C", "C1342G", "G1350C", "A1359T", "G1424A", "-1452T", "-1459A", "G1474A", "A1495G", "G1498A", "G1543A", "A1579G", 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"A6776T", "A6779G", "A6781C", "C6787T", "A6798G", "G6809A", "C6810T", "-6830A", "-6831A", "-6832T", "-6833G", "-6834A", "-6835G", "A6837C", "T6838A", "A6840C", "A6854G", "A6856G", "C6857T", "A6865T", "G6866C", "G6867C", "G6871A", "C6875A", "A6880G", "T6885C", "C6951G", "T6952C", "-6956A", "-6961G", "-6963A", "-6965G", "-6966C", "-6967C", "-6968A", "-6969A", "-6970T", "A6971G", "T6973G", "G6974A", "-6975C", "-6977A", "-6978C", "-6979A", "-6980G", "-6981G", "-6982G", "A6986-", "A6987-", "T6988-", "-6995A", "-6996C", "-6997A", "-6998A", "-6999A", "-7000T", "-7001A", "-7002G", "-7003T", "C7020A", "G7058A", "T7124C", "T7150C", "A7153T", "A7155C", "G7160A", "C7174T", "C7264T", "A7301C", "A7315G", "A7348C", "A7373T", "T7403C", "C7411T", "A7439C", "C7463A", "A7471G", "G7513T", "G7589T", "G7633A", "C7651A", "G7668A", "A7689G", "A7691C", "G7754T", "G7769A", "G7773A", "A7782G", "A7818G", "G7883A", "T7913G", "A7996G", "G8017C", "G8030T", "C8037T", "A8055G", "T8067G", "A8076G", "C8077T", "G8079A", "A8080C", "A8092T", "T8101A", "C8169T", "C8213T", "C8223T", "A8271G", "A8288C", "T8310C", "G8348A", "G8349A", "A8353G", "T8369A", "T8375G", "G8426A", "A8490G", "C8521A", "A8522G", "A8531G", "A8570G", "G8588A", "G8590C", "T8608A"], "INT": ["I84M", "G163E", "I218T", "N254K", "E256D"], "RT-p51": ["D123N", "K174-"], "RT-p66": ["D123N", "K174-"], "gp120": ["A2G", "T3A", "T35K", "G37A", "N52H", "Q54R", "I56V", "N57K", "I67V", "-106V", "-107K", "A109D", "-111T", "-112P", "N113T", "-117P", "T118I", "-137D", "R138K", "L147F", "A151T", "V154R", "N157D", "N161T", "E162D", "K203I", "K204M", "K212E", "L232I", "E240K", "E241G", "T250S", "A253T", "T255N", "N261D", "E262K", "T263P", "E265T", "L289V", "Y290V", "A291-", "T292-", "G293-", "I295-", "N297Q", "G307E", "T308S", "R315S", "A319I", "-326N", "-327E", "N328T", "K329T", "E332K", "K334E", "P335S", "S337T", "G338P", "L341I", "M344T", "E370T", "P389Q", "V402I", "T433N", "N434T", "N437T"], "gp41": ["I4M", "I24L", "K46Q", "L54M", "A96S", "N122K", "E129G", "I130L", "S133T", "A151S", "A156T", "S157N", "N160S", "K172R", "V194I", "L204V", "A243S", "A245V", "N251S", "F255C", "H258R", "R259H", "A289V", "Q290L", "L304F", "T307I", "Q323R", "I329L", "I336T"], "nef": ["G3S", "N4S", "S9R", "P24R", "A60E", "G83A", "L89H"], "p1": ["K4R", "N9H"], "p17": ["V7I", "A15K", "M31L", "I46V", "N109K", "S125I"], "p2": ["T10S"], "p24": ["A6T", "A14P", "I15M", "L83V", "A204G", "V207P", "T210S"], "p6": ["P30Q", "D32E", "K33-", "L38S"], "p7": ["R3K", "K10R", "R11K", "R26K", "K38R", "E51A", "R52G"], "pro": ["V66I", "I72V"], "rev": ["N50D", "E57Q", "S61I", "F73L", "P77S", "I78L", "S82C", "C85S"], "tat": ["Q13H", "S46C"], "vif": ["Y30H", "V31I", "A116T", "D134V", "Q136P", "K158R", "I166T", "V170T"], "vpr": ["N41S", "E58V", "S96P"], "vpu": ["I2Q", "P3S", "V21I", "E29A", "K31R", "K32Q", "K37R", "D62-"]}, "labels": {"aa": "INT: I84M, G163E, I218T, N254K, E256D; RT-p51: D123N, K174-; RT-p66: D123N, K174-; gp120: A2G, T3A, T35K, G37A, N52H, Q54R, I56V, N57K, I67V, -106V, -107K, A109D, -111T, -112P, N113T, -117P, T118I, -137D, R138K, L147F, A151T, V154R, N157D, N161T, E162D, K203I, K204M, K212E, L232I, E240K, E241G, T250S, A253T, T255N, N261D, E262K, T263P, E265T, L289V, Y290V, A291-, T292-, G293-, I295-, N297Q, G307E, T308S, R315S, A319I, -326N, -327E, N328T, K329T, E332K, K334E, P335S, S337T, G338P, L341I, M344T, E370T, P389Q, V402I, T433N, N434T, N437T; gp41: I4M, I24L, K46Q, L54M, A96S, N122K, E129G, I130L, S133T, A151S, A156T, S157N, N160S, K172R, V194I, L204V, A243S, A245V, N251S, F255C, H258R, R259H, A289V, Q290L, L304F, T307I, Q323R, I329L, I336T; nef: G3S, N4S, S9R, P24R, A60E, G83A, L89H; p1: K4R, N9H; p17: V7I, A15K, M31L, I46V, N109K, S125I; p2: T10S; p24: A6T, A14P, I15M, L83V, A204G, V207P, T210S; p6: P30Q, D32E, K33-, L38S; p7: R3K, K10R, R11K, R26K, K38R, E51A, R52G; pro: V66I, I72V; rev: N50D, E57Q, S61I, F73L, P77S, I78L, S82C, C85S; tat: Q13H, S46C; vif: Y30H, V31I, A116T, D134V, Q136P, K158R, I166T, V170T; vpr: N41S, E58V, S96P; vpu: I2Q, P3S, V21I, E29A, K31R, K32Q, K37R, D62-"}}}, {"name": "HQ385477", "node_attrs": {"div": 0.13649, "accession": "HQ385477", "clade_membership": {"value": "CRF49_cpx"}, "country": {"value": "GM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "N18380"}, "LANL_subtype": {"value": "CRF49_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-152T", "A304T", "A356G", "G394A", "G407A", "C417A", "G452A", "G455A", "C467T", "C531T", "G534A", "T536C", "C537A", "C539T", "A557G", "G582T", "C603A", "G612C", "C626A", "C679T", "G687A", "A705-", "A706-", "C707-", "A708-", "C710-", "A711-", "G712-", "C713-", "G715-", "T716-", "C734T", "C773A", "A774G", "A869G", "G906A", "T936C", "T974C", "A1028G", "T1063C", "G1090C", "A1176G", "G1192A", "G1232A", "A1263T", "G1271A", "C1330A", "C1351T", "G1404A", "C1406T", "G1443A", "T1444C", "C1453-", "C1454-", "-1455G", "-1456G", "-1457C", "-1459G", "G1508A", "T1547C", "G1625A", "A1657G", "T1676C", "C1682T", "C1714T", "A1740G", "G1763A", "T1791G", "G1839A", "G1845C", "G1852A", "G1927A", "G1972A", "A2002G", "C2062T", "A2154G", "A2155G", "A2161G", "T2195C", "C2199T", "G2224A", "A2226G", "A2230G", "C2238T", "A2239C", "A2317G", "A2374G", "A2395G", "A2422G", "C2449T", "G2459A", "A2463G", "G2530A", "C2575T", "A2612G", "A2615G", "A2626C", "A2627C", "A2692G", "A2794-", "A2881C", "A2918C", "A2920G", "A2938G", "C2968A", "G2972A", "C3002A", "A3103G", "G3127A", "G3151C", "G3169A", "G3173A", "A3193G", "T3260A", "A3286C", "T3399C", "C3449T", "A3454G", "C3499T", "T3542C", "T3577C", "C3688T", "C3691T", "A3709G", "G3787A", "G3859A", "A3931G", "A3989G", "A4036G", "C4043T", "T4075C", "A4096G", "T4153C", "A4372G", "C4543G", "A4567G", "G4581A", "T4656C", "A4687G", "A4775G", "G4864A", "G4975A", "G5087T", "C5162T", "C5182A", "A5210C", "C5227T", "T5239C", "G5257A", "A5268G", "A5282T", "A5290G", "C5336T", "G5448A", "A5462G", "A5463G", "G5499A", "C5513A", "A5586G", "T5604G", "T5616C", "C5627T", "T5705A", "G5737A", "A5748T", "A5760G", "T5778C", "-5790G", "-5791G", "-5792A", "-5793C", "G5803C", "A5805G", "G5808C", "-5809C", "-5811T", "G5812A", "-5816G", "-5819T", "A5839G", "T5857G", "C5859T", "A5914G", "A5935C", "G5948T", "G5963A", "G5972A", "A5995T", "G6029A", "T6046G", "A6061C", "T6067C", "C6083T", "T6166A", "G6170T", "C6177G", "A6179G", "A6182T", "T6184A", "C6190A", "A6194T", "-6195C", "-6202T", "-6203G", "-6209A", "-6214A", "-6215C", "-6216T", "-6217G", "-6219A", "-6220C", "-6223A", "-6225A", "A6253G", "T6271C", "A6272C", "A6286G", "C6289T", "C6293A", "T6295C", "A6311G", "C6317T", "T6321G", "C6401G", "T6409C", "C6483T", "A6488T", "A6489C", "G6498C", "T6504C", "G6526C", "T6531C", "G6569A", "G6575C", "G6593C", "A6594C", "T6600C", "G6605A", "A6638G", "A6640G", "G6647C", "G6655T", "C6666T", "T6745C", "C6752A", "C6758T", "A6765C", "G6771A", "A6780C", "A6820G", "A6848C", "A6850C", "G6860C", "A6862C", "A6863G", "C6864A", "A6868G", "C6874T", "T6883G", "G6886A", "A6887C", "C6888A", "-6956T", "-6961T", "-6963G", "-6965A", "-6966G", "-6967T", "-6968T", "-6969G", "-6970G", "G6972A", "-6975G", "A6989G", "C6993G", "T7087C", "A7152G", "A7153G", "A7154G", "A7157G", "T7159G", "A7163G", "C7164A", "G7195A", "G7269A", "G7281T", "G7324A", "G7343A", "G7349A", "C7393T", "G7395A", "C7597T", "T7609C", "G7658C", "G7666A", "G7669C", "A7700T", "A7722G", "A7744C", "A7761G", "G7765A", "C7874A", "A7880G", "T7912C", "G7957A", "G8050C", "G8107A", "A8130T", "T8172A", "T8176C", "G8216A", "G8219A", "G8231A", "G8234A", "G8267A", "T8280G", "G8287A", "T8302C", "G8348T", "C8354A", "A8396G", "G8402A", "A8408T", "C8491G", "G8534A", "T8568G", "A8584T"], "INT": ["I72V", "P90S", "R269K"], "RT-p51": ["K20R", "T35I", "E44G", "S48F", "E122K", "D123S", "T173A", "K174E", "E177D", "I178L"], "RT-p66": ["K20R", "T35I", "E44G", "S48F", "E122K", "D123S", "T173A", "K174E", "E177D", "I178L"], "gp120": ["S1R", "A2V", "A32S", "G37S", "V40I", "E59K", "N64K", "K69N", "H77Y", "-106L", "-107N", "N108S", "A109T", "-111N", "-112T", "S115T", "-117A", "-124D", "I133M", "-137G", "R138Q", "L147I", "I153V", "P155S", "I156S", "N161S", "Q183E", "P210L", "E239K", "E241Q", "I242V", "E247P", "I249T", "D251N", "E265P", "K267N", "P271L", "A288V", "-294A", "Q300K", "H302Y", "N304T", "S306N", "D309T", "R315N", "E332H", "A336P", "S337N", "I343M", "M344I", "T345Q", "S366T", "N368Y", "E370S", "T371S", "N372W", "S373N", "T374G", "-375N", "-376D", "-377S", "-385T", "T433S", "N434R", "N435D", "N436E", "N437D", "M447I", "R472K", "R476I"], "gp41": ["A14T", "G16R", "R31K", "E119Q", "N122S", "N140S", "Q147H", "D153G", "L191I", "I193V", "F263L", "H276L", "D305N", "A306T", "A310T", "V311I", "A322T", "F326C"], "nef": ["N4K", "M20I", "A50S", "L76V", "Y81F"], "p1": ["N9S"], "p17": ["A15E", "R20Q", "Q28K", "P66S", "A67T", "L68I", "A83S", "Q90K", "E93Q", "T115M", "A118T", "N124I", "S126-", "S127-", "I128-", "S129-"], "p2": ["V7T", "T10G", "N11S"], "p24": ["I15V", "V59I", "L111P", "G120A", "S149G", "R154K", "T178S", "T200N", "G225S"], "p6": ["A12V", "I21V", "L38V"], "pro": ["R14K", "G16A"], "rev": ["K24R", "A37T", "A68P", "E87K"], "tat": ["K29R", "S46Y", "G83D"], "vif": ["K34R", "R93K", "R130K", "R167N"], "vpr": ["E55G", "I60L"], "vpu": ["A7V", "L33Q", "D44N", "R47S", "V65Q", "E66N", "N78D"]}, "labels": {"aa": "INT: I72V, P90S, R269K; RT-p51: K20R, T35I, E44G, S48F, E122K, D123S, T173A, K174E, E177D, I178L; RT-p66: K20R, T35I, E44G, S48F, E122K, D123S, T173A, K174E, E177D, I178L; gp120: S1R, A2V, A32S, G37S, V40I, E59K, N64K, K69N, H77Y, -106L, -107N, N108S, A109T, -111N, -112T, S115T, -117A, -124D, I133M, -137G, R138Q, L147I, I153V, P155S, I156S, N161S, Q183E, P210L, E239K, E241Q, I242V, E247P, I249T, D251N, E265P, K267N, P271L, A288V, -294A, Q300K, H302Y, N304T, S306N, D309T, R315N, E332H, A336P, S337N, I343M, M344I, T345Q, S366T, N368Y, E370S, T371S, N372W, S373N, T374G, -375N, -376D, -377S, -385T, T433S, N434R, N435D, N436E, N437D, M447I, R472K, R476I; gp41: A14T, G16R, R31K, E119Q, N122S, N140S, Q147H, D153G, L191I, I193V, F263L, H276L, D305N, A306T, A310T, V311I, A322T, F326C; nef: N4K, M20I, A50S, L76V, Y81F; p1: N9S; p17: A15E, R20Q, Q28K, P66S, A67T, L68I, A83S, Q90K, E93Q, T115M, A118T, N124I, S126-, S127-, I128-, S129-; p2: V7T, T10G, N11S; p24: I15V, V59I, L111P, G120A, S149G, R154K, T178S, T200N, G225S; p6: A12V, I21V, L38V; pro: R14K, G16A; rev: K24R, A37T, A68P, E87K; tat: K29R, S46Y, G83D; vif: K34R, R93K, R130K, R167N; vpr: E55G, I60L; vpu: A7V, L33Q, D44N, R47S, V65Q, E66N, N78D"}}}]}]}]}, {"name": "results/subtype_trees/J.nwk", "node_attrs": {"div": 0.08751999999999999, "clade_membership": {"value": "J"}}, "branch_attrs": {"mutations": {"nuc": ["C153T", "-166G", "-167G", "A278G", "-280G", "A398G", "A425G", "A461C", "T486C", "A491G", "A492T", "A503C", "A516C", "A520T", "T525C", "A527C", "C539T", "A540C", "T549A", "C558A", "A605G", "G615A", "T641C", "A644G", "A656T", "T662C", "G665A", "A674G", "C684-", "G686-", "A689-", "C691-", "C700A", "G702A", "G703A", "A705G", "G709A", "C713T", "-714C", "C731T", "A743G", "C748T", "A749G", "A759C", "T760C", "A774C", "A818G", "G821A", "T892C", "G893C", "T904C", "C917T", "G920A", "C947T", "C1005G", "C1040T", "A1067G", "G1109A", "C1118T", "C1136T", "T1143C", "T1175C", "G1199A", "C1211T", "C1247A", "A1292T", "C1299T", "T1325C", "G1339A", "G1355A", "C1406T", "C1446A", "A1448C", "-1452A", "-1459A", "G1472A", "C1478T", "T1481C", "G1489A", "-1503G", "-1504T", "-1505T", "A1529G", "C1536A", "C1541A", "G1543A", "T1547C", "A1643G", "A1657G", "T1676C", "A1776-", "A1903C", "G2201C", "A2210G", "C2263T", "A2275G", "C2326T", "G2456T", "T2476C", "T2521C", "A2579T", "C2605T", "T2620C", "A2641G", "T2653C", "A2662G", "A2674G", "G2682A", "G2683A", "C2694T", "A2707G", "A2710G", "A2713G", "A2716G", "C2749T", "A2794G", "G2821A", "C2839A", "G2842A", "C2978T", "A3019G", "G3221T", "C3224T", "A3226G", "A3280G", "A3334G", "G3379A", "A3388G", "G3398A", "A3400G", "T3436C", "C3449A", "A3487G", "T3493G", "T3497A", "A3508C", "T3530C", "A3538C", "C3545T", "A3565G", "C3567T", "A3607G", "C3610T", "C3665G", "A3676G", "G3796A", "G3859A", "A4071T", "C4072T", "C4079T", "T4135C", "A4150T", "C4181A", "A4183G", "G4264A", "T4276A", "G4354A", "G4582A", "G4642A", "A4643T", "T4652A", "C4665T", "T4674A", "G4696A", "T4701C", "G4726A", "G4766A", "A4820T", "A5085C", "A5187G", "T5281C", "T5357A", "A5717G", "-5791G", "-5792A", "-5793A", "G5856A", "C6134A", "C6160T", "G6170A", "A6172C", "A6192C", "-6195G", "-6198A", "-6202T", "-6203A", "-6204G", "-6205T", "A6228-", "A6276G", "A6311G", "A6323G", "G6578A", "A6602T", "A6653G", "T6733A", "T6766C", "T6943C", "C6951G", "G7026A", "A7042G", "-7165T", "G7197A", "A7240G", "C7511T", "A7552G", "G7657A", "A7689G", "C8171T", "G8216A", "A8367-", "G8368-", "A8426T", "A8458G", "A8531G", "C8603T", "A8794G", "C8810T", "C9073T", "C9078T", "A9095G", "T9180C"], "INT": ["Y99F", "Q136K"], "RT-p51": ["E36Q", "T39A", "S162C", "G196E", "T200R", "D324E", "A376S", "E404D", "V435M"], "RT-p66": ["E36Q", "T39A", "D121Y", "S162C", "G196E", "T200R", "D248E", "D324E", "A376S", "E404D", "V435M", "L452I", "E471D", "S491L", "Q524E"], "gp120": ["S1N", "L94I", "K141R", "K150R", "I153V", "N157D", "T250S", "K267E", "A288V", "D294E", "L341I", "-370S", "R391K", "R448K"], "gp41": ["E129G", "Q290C", "D305N"], "nef": ["P24A", "E28D", "K39R"], "p1": ["N9S"], "p17": ["E42D", "T53S", "I61L", "E62V", "K69Q", "S72T", "L75I", "V94I", "T115A", "Q117K", "A119-", "T122K", "G123K", "S125N"], "p24": ["A6L", "M10P", "I15L", "M54T", "I58T", "P92A", "E187D", "R203K"], "p6": ["D32E"], "p7": ["G8N", "-13V", "L24I", "R26K"], "pro": ["E35D"], "vif": ["R19N", "N22K", "H27Y", "Y30N", "R37K", "R47N", "E78D", "R167Q"], "vpu": ["K37R"]}, "labels": {"aa": "INT: Y99F, Q136K; RT-p51: E36Q, T39A, S162C, G196E, T200R, D324E, A376S, E404D, V435M; RT-p66: E36Q, T39A, D121Y, S162C, G196E, T200R, D248E, D324E, A376S, E404D, V435M, L452I, E471D, S491L, Q524E; gp120: S1N, L94I, K141R, K150R, I153V, N157D, T250S, K267E, A288V, D294E, L341I, -370S, R391K, R448K; gp41: E129G, Q290C, D305N; nef: P24A, E28D, K39R; p1: N9S; p17: E42D, T53S, I61L, E62V, K69Q, S72T, L75I, V94I, T115A, Q117K, A119-, T122K, G123K, S125N; p24: A6L, M10P, I15L, M54T, I58T, P92A, E187D, R203K; p6: D32E; p7: G8N, -13V, L24I, R26K; pro: E35D; vif: R19N, N22K, H27Y, Y30N, R37K, R47N, E78D, R167Q; vpu: K37R", "clade": "J"}}, "children": [{"name": "J_NODE_0000001", "node_attrs": {"div": 0.10104999999999999, "clade_membership": {"value": "J"}}, "branch_attrs": {"mutations": {"nuc": ["C379A", "A410G", "G498A", "G675C", "-684A", "-686A", "-691A", "G747C", "A839G", "A878G", "T1064C", "C1187T", "T1229C", "A1242G", "G1271T", "G1313A", "G1350T", "A1445G", "A1447C", "G1493T", "C1517T", "G1661A", "T1791C", "A1857G", "T1981G", "A1982G", "T1986C", "A2222G", "A2413C", "G2473A", "G2914A", "C2953T", "G2984A", "C2985G", "G3010A", "G3016A", "A3043G", "A3124G", "C3171G", "G3431T", "A3457G", "G3553A", "G3595A", "A3604G", "A3866G", "A3913G", "C4006T", "C4146A", "G4176A", "T4769G", "T4805G", "T4868C", "A4952G", "C5227T", "G5257A", "T5263A", "C5336T", "G5359C", "G5363A", "T5399G", "G5415T", "G5433A", "C5445T", "T5491C", "C5579T", "G5587A", "C5602T", "A5659C", "A5661T", "T5669G", "C5679T", "A5685G", "G5712A", "G5729A", "-5800G", "A5807T", "G5963A", "C5965A", "T6024A", "G6088A", "A6133G", "T6151C", "C6165G", "-6211T", "G6274A", "A6327G", "T6355C", "G6466T", "T6559C", "C6618A", "A6654C", "C6667T", "G6668A", "C6669A", "-6699A", "A6703G", "T6735A", "C6752G", "C6777A", "A6779G", "A6781T", "G6802A", "G6809A", "A6855C", "G6860C", "A6862C", "C6875A", "A6884G", "C6894G", "-6957A", "-6958T", "-6962A", "-6964T", "-6991C", "-7000A", "-7001A", "-7003T", "-7005A", "-7006C", "-7008C", "C7016A", "T7156G", "T7642G", "G7735T", "C7742A", "C8071T", "T8172G", "G8329A", "G8349A", "T8371-", "T8374-", "T8375-", "G8385C", "A8432G", "C8543A", "G8567A", "C8688A", "T8701A", "A8804G", "G8807A", "T8903C"], "INT": ["I31V", "G134D"], "RT-p51": ["K43E", "D248E", "A297R"], "RT-p66": ["K43E", "A297R", "A446S"], "gp120": ["E125-", "M126-", "K127-", "T255N", "E262K", "A272N", "I281M", "Q300E", "T308K", "A319T", "V332N", "P335S", "A336P", "M344V", "T347S", "-379N", "-385T", "L388I", "N434G"], "gp41": ["E119Q", "D125N", "K144N", "Q147K"], "nef": ["G3S", "E15Q", "H116N", "F120Y"], "p17": ["A15D", "E55K", "K114Q", "-119E", "N124D"], "p24": ["T171A", "E180D", "A207S"], "p6": ["P23S"], "p7": ["Q9H"], "pro": ["K20R", "D61E", "I62V", "L63P"], "rev": ["S108M"], "tat": ["I8K", "Q13H", "P68L", "E71K"], "vif": ["D61E", "H73Q"], "vpr": ["R85P"], "vpu": ["V21G", "R41K"]}, "labels": {"aa": "INT: I31V, G134D; RT-p51: K43E, D248E, A297R; RT-p66: K43E, A297R, A446S; gp120: E125-, M126-, K127-, T255N, E262K, A272N, I281M, Q300E, T308K, A319T, V332N, P335S, A336P, M344V, T347S, -379N, -385T, L388I, N434G; gp41: E119Q, D125N, K144N, Q147K; nef: G3S, E15Q, H116N, F120Y; p17: A15D, E55K, K114Q, -119E, N124D; p24: T171A, E180D, A207S; p6: P23S; p7: Q9H; pro: K20R, D61E, I62V, L63P; rev: S108M; tat: I8K, Q13H, P68L, E71K; vif: D61E, H73Q; vpr: R85P; vpu: V21G, R41K"}}, "children": [{"name": "KU168280", "node_attrs": {"div": 0.14669, "accession": "KU168280", "clade_membership": {"value": "J"}, "country": {"value": "CD"}, "date": {"value": 2003.0}, "Strain_name": {"value": "LA26DiAn"}, "LANL_subtype": {"value": "J"}}, "branch_attrs": {"mutations": {"nuc": ["G92A", "C155T", "A214G", "T227C", "G265A", "A301G", "G361A", "C362G", "A380G", "A386G", "G398A", "A440G", "G491A", "C516T", "T567C", "C587T", "A615G", "T636G", "T656G", "-689T", "C827T", "T861G", "C897T", "A899G", "A978T", "A1002G", "C1060A", "G1089A", "A1127G", "C1143T", "A1157G", "T1182C", "G1192A", "T1211C", "C1220T", "C1325T", "T1334C", "T1406C", "A1442G", "A1461G", "A1472G", "G1488A", "A1495G", "A1532G", "A1541T", "C1627T", "G1643A", "A1733G", "-1746T", "-1747C", "-1748C", "C1749T", "T1752C", "C1754-", "C1755-", "C1756-", "A1777-", "G1784A", "C1826A", "T1828A", "A1835G", "G1839A", "G1849A", "A1958G", "A1988G", "C2010T", "T2041A", "G2042T", "A2063T", "T2066A", "G2074A", "A2125G", "A2197G", "A2223C", "G2224A", "T2299C", "A2305G", "G2392A", "C2420T", "C2449T", "T2456G", "A2463G", "C2464A", "G2470A", "T2479A", "A2602G", "C2613T", "A2614G", "G2630A", "T2672C", "A2695G", "G2713A", "C2831T", "G2846A", "A2929G", "T2996C", "G3044A", "T3056C", "A3103G", "G3127A", "A3170G", "T3172A", "C3178T", "A3193G", "G3200A", "T3224A", "A3230T", "A3238G", "C3271T", "A3283G", "C3307A", "A3382G", "A3403G", "G3467A", "T3472G", "C3475T", "T3551C", "T3566G", "A3651G", "C3712T", "T3755G", "T3757C", "G3808A", "G3896A", "G3925A", "T3943C", "G3952A", "A3955C", "T3967C", "T4072C", "G4109A", "C4129G", "A4130G", "C4140T", "G4145A", "T4153C", "G4186A", "A4276T", "T4291A", "A4306G", "T4321C", "T4450C", "C4471T", "A4558T", "G4573A", "G4622A", "A4644G", "T4656C", "T4670C", "A4687G", "G4689A", "T4691G", "A4695G", "A4697C", "A4725C", "G4765A", "A4766T", "G4767A", "A4768G", "A4773G", "A4806C", "A4895G", "T4907A", "C4937A", "C4976T", "T5047C", "A5056G", "A5057G", "G5060A", "G5114C", "C5115T", "A5140G", "A5155G", "A5159G", "G5179A", "A5263G", "G5267A", "A5268C", "A5282T", "A5284G", "G5399A", "T5412C", "C5444A", "A5611T", "G5626A", "C5627T", "T5654C", "C5658A", "A5680G", "A5721C", "G5791T", "A5792C", "G5794A", "-5799T", "-5801T", "A5805G", "-5809G", "-5810G", "-5811G", "G5812-", "T5813-", "G5814-", "G5815-", "G5817-", "A5818-", "G5820-", "G5821-", "G5822-", "G5823-", "A5845G", "G5917T", "T5923A", "T5938A", "A5965G", "T5968C", "G5972A", "A6007C", "G6019A", "A6023G", "T6025A", "C6026T", "G6029A", "A6044G", "T6046A", "A6066G", "A6136G", "A6159C", "A6168C", "T6171G", "C6172T", "-6175C", "A6179G", "T6181A", "A6186G", "C6189T", "C6192A", "A6194G", "-6201A", "T6202C", "-6206A", "-6207G", "-6208T", "-6209C", "-6210T", "-6228G", "A6234G", "A6275C", "G6276A", "G6277A", "A6282G", "G6311A", "A6320C", "G6323A", "T6328A", "A6329G", "A6335T", "G6336C", "A6339G", "T6341G", "T6345A", "C6412T", "G6442A", "T6457A", "G6458A", "A6465C", "A6490C", "G6532A", "C6551T", "G6566T", "A6576G", "A6635G", "A6641C", "G6647A", "A6649C", "T6652C", "G6653A", "A6733T", "T6745C", "A6753C", "A6757T", "A6788G", "C6797T", "A6798C", "A6823G", "C6824T", "-6830C", "-6831C", "-6832A", "-6833A", "-6834A", "-6835T", "T6838G", "A6840C", "C6843T", "T6846A", "A6847T", "A6848T", "C6850T", "T6851G", "T6852A", "T6853C", "A6854T", "A6859C", "G6905A", "T6925C", "A6935C", "G6948A", "-6956A", "-6959G", "-6960G", "-6961A", "-6963G", "-6965A", "-6966G", "-6967T", "-6968T", "-6969G", "-6970G", "-6989A", "C6993A", "-6994T", "-6995G", "-6996C", "-6997T", "-6998A", "-6999C", "-7002A", "-7004G", "-7007A", "-7009T", "C7018T", "A7032G", "A7069C", "T7075C", "C7105T", "A7106G", "C7107T", "C7127A", "G7132A", "A7148C", "T7150G", "A7158C", "T7162G", "A7163G", "A7197G", "A7237G", "A7241G", "A7290G", "A7306-", "G7307-", "T7308-", "G7322C", "T7403C", "G7441T", "G7453T", "A7471G", "G7495A", "A7531G", "A7533G", "T7622A", "A7641G", "G7642A", "C7651T", "A7657G", "G7668A", "A7673G", "A7679C", "T7681G", "A7696C", "C7699T", "A7700G", "G7712A", "A7721G", "G7729A", "C7755A", "G7760A", "A7764G", "G7765T", "A7782G", "A7790G", "T7796A", "C7874A", "A7880G", "G7915A", "T7932C", "C7951A", "G7992A", "A8023G", "A8055G", "A8119G", "G8130A", "C8146T", "A8162G", "A8163C", "T8164A", "T8167G", "T8169C", "G8173T", "C8183A", "A8184G", "A8193G", "C8213T", "C8268T", "T8278C", "T8279G", "T8280C", "A8288G", "C8294A", "G8317A", "G8328T", "A8338G", "G8348T", "A8353G", "-8354T", "G8365A", "-8367A", "-8368A", "-8369G", "-8371G", "-8374A", "-8375G", "C8382T", "T8414C", "G8465A", "A8469G", "G8487-", "C8488-", "A8489-", "C8491-", "T8492-", "C8494A", "A8495T", "A8496G", "C8504A", "T8505G", "C8509T", "G8534A", "G8537A", "T8546C", "T8597C", "A8653G", "A8726G", "G8738A", "A8770T", "G8795A", "G8805A", "A8823G", "G8834A", "A8874G", "C8934A", "T8935A", "G8936A", "T8947A", "T8948C", "T8974G", "C8979A", "G8980A", "C9017T", "C9047A", "A9050C"], "INT": ["D41N", "M50I", "V112I", "S119G", "T122I", "A124N", "G283S"], "RT-p51": ["E43A", "D123G", "T173M", "V179I", "R200M", "D251N", "V317I", "S321P", "S359G", "A369T", "L377M", "S379C", "D404E"], "RT-p66": ["E43A", "Y121D", "D123G", "T173M", "V179I", "R200M", "D251N", "V317I", "S321P", "S359G", "A369T", "L377M", "S379C", "D404E", "V458I", "L491V", "N519S", "S554A"], "gp120": ["K21N", "V40I", "N57E", "E59K", "N64E", "D71G", "I94M", "N102T", "T104S", "-105N", "-109V", "-111N", "-112G", "S114N", "-117L", "-118G", "-119M", "-120R", "R141Q", "K143R", "V153I", "I156L", "D157N", "N158R", "N159D", "N161S", "N201K", "D202N", "K204T", "K212N", "A238S", "E241G", "N261D", "T263P", "E265N", "E267T", "E300A", "N312D", "R315S", "H324Y", "-326P", "-327N", "N328-", "K334D", "G351R", "K361Q", "S365N", "N369G", "-371S", "-372W", "-378N", "-380N", "-381A", "-382T", "-383N", "-384D", "K393R", "T418V", "L425I", "N432Q", "-433G", "N436E", "N437T", "K448R", "I463V", "E479G"], "gp41": ["V2-", "V7L", "K46N", "K77R", "S107T", "E113G", "I118M", "R122K", "I124V", "N126Q", "N133D", "E137K", "N140D", "A151E", "D153N", "K154S", "N160S", "S165T", "L191I", "I193V", "I210T", "G230D", "N239S", "N251S", "N287A", "Q294R", "K297R", "L304F", "A322V", "F326A", "I329V", "H331N", "L340F", "R342I"], "nef": ["K4S", "S8N", "S9K", "I10R", "V11E", "P14S", "I43V", "A49N", "A50D", "T51-", "N52-", "C55G", "A56V", "S88G", "K104R", "Y143F", "E155K", "N161D", "R178G", "L198K", "F202Y"], "p17": ["S9K", "D15E", "I94V", "L101V", "I107M", "A115T"], "p2": ["-12V", "I13-"], "p24": ["S44A", "I91V", "T110N", "G120S", "R154K"], "p6": ["K33-"], "p7": ["K10R", "A54V"], "pro": ["L10I", "I13V", "R14K", "I54V", "I64V", "A71V", "V82F", "M89L", "L90M"], "rev": ["I59V", "N91D", "P100S", "E105G", "S106T", "C107G", "V109L", "A112E"], "tat": ["T23N", "V36M", "S75P", "P81Q"], "vif": ["T20A", "K34R", "A35T", "K37D", "N47H", "G60D", "E61R", "T74P", "D117E", "I154T", "K157R", "K176N", "P177S", "E185G", "N190S"], "vpr": ["A4L", "T19A", "E55T", "I60L"], "vpu": ["I2L", "A7I", "F16S", "F17L", "I25V", "K38N", "D60E", "T61L", "E62S", "E63K", "L67M", "-68G", "V69P", "E70-", "M71-", "G72-", "P73-", "N80D"]}, "labels": {"aa": "INT: D41N, M50I, V112I, S119G, T122I, A124N, G283S; RT-p51: E43A, D123G, T173M, V179I, R200M, D251N, V317I, S321P, S359G, A369T, L377M, S379C, D404E; RT-p66: E43A, Y121D, D123G, T173M, V179I, R200M, D251N, V317I, S321P, S359G, A369T, L377M, S379C, D404E, V458I, L491V, N519S, S554A; gp120: K21N, V40I, N57E, E59K, N64E, D71G, I94M, N102T, T104S, -105N, -109V, -111N, -112G, S114N, -117L, -118G, -119M, -120R, R141Q, K143R, V153I, I156L, D157N, N158R, N159D, N161S, N201K, D202N, K204T, K212N, A238S, E241G, N261D, T263P, E265N, E267T, E300A, N312D, R315S, H324Y, -326P, -327N, N328-, K334D, G351R, K361Q, S365N, N369G, -371S, -372W, -378N, -380N, -381A, -382T, -383N, -384D, K393R, T418V, L425I, N432Q, -433G, N436E, N437T, K448R, I463V, E479G; gp41: V2-, V7L, K46N, K77R, S107T, E113G, I118M, R122K, I124V, N126Q, N133D, E137K, N140D, A151E, D153N, K154S, N160S, S165T, L191I, I193V, I210T, G230D, N239S, N251S, N287A, Q294R, K297R, L304F, A322V, F326A, I329V, H331N, L340F, R342I; nef: K4S, S8N, S9K, I10R, V11E, P14S, I43V, A49N, A50D, T51-, N52-, C55G, A56V, S88G, K104R, Y143F, E155K, N161D, R178G, L198K, F202Y; p17: S9K, D15E, I94V, L101V, I107M, A115T; p2: -12V, I13-; p24: S44A, I91V, T110N, G120S, R154K; p6: K33-; p7: K10R, A54V; pro: L10I, I13V, R14K, I54V, I64V, A71V, V82F, M89L, L90M; rev: I59V, N91D, P100S, E105G, S106T, C107G, V109L, A112E; tat: T23N, V36M, S75P, P81Q; vif: T20A, K34R, A35T, K37D, N47H, G60D, E61R, T74P, D117E, I154T, K157R, K176N, P177S, E185G, N190S; vpr: A4L, T19A, E55T, I60L; vpu: I2L, A7I, F16S, F17L, I25V, K38N, D60E, T61L, E62S, E63K, L67M, -68G, V69P, E70-, M71-, G72-, P73-, N80D"}}}, {"name": "AF082394", "node_attrs": {"div": 0.13244999999999998, "accession": "AF082394", "clade_membership": {"value": "J"}, "country": {"value": "SE"}, "date": {"value": 1993.0}, "Strain_name": {"value": "SE9280_7887"}, "LANL_subtype": {"value": "J"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "C362T", "A380T", "G428A", "A431G", "T539C", "G552C", "A569G", "T596C", "G614A", "A628T", "C641G", "A665G", "G667A", "G671A", "A678G", "-689A", "G693A", "A809G", "G818A", "G906A", "G908A", "T917C", "A978G", "A1017G", "C1094T", "A1115G", "C1178T", "T1299C", "A1412G", "A1415G", "A1454C", "A1486G", "G1527C", "G1529A", "G1562A", "T1722C", "T1728C", "A1742C", "G1743-", "C1744-", "C1745-", "-1775C", "-1776A", "T1909C", "G1916C", "T1978C", "C1987G", "A2023G", "G2027A", "G2156A", "A2241G", "A2243G", "G2275A", "A2368G", "C2464T", "C2476T", "T2536C", "A2563C", "C2575T", "G2600A", "A2612G", "C2613A", "A2616G", "T2694G", "G2702A", "G2716A", "C2797T", "A2818C", "G2830A", "G2946A", "G2947A", "G3015A", "A3082G", "A3097G", "C3133T", "A3208G", "T3221G", "A3230G", "G3231C", "G3250A", "A3279G", "G3280A", "T3310C", "T3355C", "A3367G", "T3450C", "C3469T", "G3493A", "A3535C", "A3555G", "T3566C", "T3613A", "A3667G", "G3684A", "A3697G", "A3736G", "G3808T", "C3823T", "A3859G", "A3880G", "T3977C", "A3989G", "A4064G", "A4093C", "A4146G", "T4153G", "T4321A", "A4407G", "C4426T", "T4500C", "A4531G", "T4643C", "A4664G", "A4693G", "T4703G", "A4709G", "A4774T", "G4782A", "T4826C", "T4858A", "A4861G", "C4914T", "A4915G", "T4967A", "T4991C", "A5050G", "A5059G", "G5128C", "A5150C", "G5187A", "T5203C", "C5221T", "A5226G", "C5237T", "A5247G", "T5275C", "C5306T", "C5446A", "G5448T", "C5478T", "A5482G", "A5494C", "A5545T", "A5567C", "A5599G", "T5600C", "A5619G", "A5643T", "T5653A", "G5671A", "G5699A", "G5703A", "T5772C", "C5797T", "-5799G", "-5801C", "G5802A", "A5805C", "A5806C", "G5808T", "-5816A", "-5819G", "T5857G", "T5860A", "C5862A", "A5867G", "T5932C", "C6004T", "A6009G", "A6022G", "G6029C", "A6030C", "T6046C", "A6076C", "T6085G", "C6145A", "G6167A", "T6169C", "A6174C", "-6175T", "C6177G", "T6181C", "C6183G", "C6190A", "T6199C", "-6201G", "-6206G", "-6207T", "-6208A", "-6209A", "-6210G", "-6212A", "-6213G", "-6214T", "-6215C", "-6216C", "-6217T", "-6218G", "-6219A", "-6220T", "-6221A", "-6222T", "-6223C", "G6227-", "G6229-", "A6234C", "G6269A", "A6281C", "A6286G", "T6331C", "G6336A", "T6337A", "G6379A", "C6482T", "T6517C", "A6573G", "A6577C", "T6598C", "T6613C", "C6654T", "A6659T", "C6660A", "C6670T", "A6682G", "T6724C", "G6755A", "G6774A", "A6777G", "A6786G", "A6798G", "A6801G", "T6849A", "C6857T", "C6874T", "C6919A", "-6956G", "-6959A", "-6960A", "-6961G", "-6963A", "-6971A", "-6972G", "-6973C", "-6974A", "-6975T", "-6976T", "-6977G", "-6978A", "-6979A", "-6980G", "-6981C", "-6982T", "-6983A", "-6984C", "-6985A", "-6989G", "-7002G", "-7007G", "-7009A", "C7018A", "G7054A", "A7057G", "G7058A", "T7059C", "A7072C", "C7087T", "A7102G", "G7144A", "T7150C", "A7152G", "C7153G", "A7154G", "A7161G", "T7162C", "G7190A", "G7269A", "G7343A", "C7354T", "C7392T", "T7511C", "G7543A", "C7590A", "C7603T", "T7604G", "T7630G", "G7633C", "A7701G", "G7769A", "G7773A", "C7775T", "T7801C", "T7813C", "A7816C", "G7835A", "C7843T", "G8019A", "T8027C", "A8032T", "A8118G", "G8130T", "G8160T", "T8164C", "G8219A", "G8254A", "G8264A", "T8323A", "G8350A", "-8354A", "A8370-", "A8372-", "G8373-", "G8376-", "G8377-", "A8378-", "A8388G", "A8453G", "A8455C", "G8458A", "-8490G", "C8503A", "G8554A", "G8562A", "T8582A", "T8595G", "G8604A", "C8684T", "T8685C", "C8756A", "G8795C", "G8822A", "G8861A", "A8886C", "T8887A", "C8978G", "T9012A", "A9049G", "A9060T", "C9068T", "G9095T", "G9132A", "T9176G", "T9179G", "C9181A"], "INT": ["E11D", "I72V", "T97A", "A124G", "D167E", "K211R", "L242P"], "RT-p51": ["V21I", "K49R", "I50V", "D121Y", "E169K", "T173E", "K174R", "E203K", "R284K", "R307K", "S376A", "S379A", "K395R"], "RT-p66": ["V21I", "K49R", "I50V", "E169K", "T173E", "K174R", "E203K", "R284K", "R307K", "S376A", "S379A", "K395R", "I452T", "Q480H", "Q487R", "R530K"], "gp120": ["N1K", "T3K", "N5D", "N52S", "I56M", "E59P", "E74D", "H77Q", "-105S", "-106N", "-107S", "-109T", "-111S", "-112N", "N113S", "S115V", "-117S", "-118P", "-119D", "-120I", "-121M", "-122T", "D139N", "K143Q", "N158S", "N161K", "S162N", "K204N", "P210S", "E240G", "E241D", "E267V", "T269Y", "A301T", "G307E", "K308R", "N311S", "K316R", "K334T", "F355L", "N368D", "-371I", "-372E", "-373A", "-374T", "-380D", "-381T", "-382S", "-384A", "V402T", "-433R", "N436G", "N437S", "T439N", "D446N", "R472K"], "gp41": ["A14T", "A30V", "T96N", "S101A", "D109E", "E110D", "N133S", "A156T", "S157N", "D163N", "V178I", "E272G", "H276L", "G286V", "A289V", "C290W", "A306T", "V321I"], "nef": ["S3N", "S9-", "I10-", "V11-", "G12-", "I16V", "A24P", "D38A", "R39K", "A54D", "R71K", "V74I", "F85V", "Y115H", "R151S", "M173I", "M182Q"], "p17": ["V7I", "M31I", "E73Q", "K98M", "D102E", "S111N", "A120T"], "p24": ["V59I", "L83V", "M96V"], "p6": ["F15L", "F17L", "A22P", "S24P", "P25-", "E32D", "*50L"], "p7": ["K7R", "N8D", "E21Q"], "pro": ["G40R", "V77I"], "rev": ["E10D", "I18L", "L60P", "T62S", "S106P"], "tat": ["K8R", "Q24N", "K40Q", "T57S", "N64T"], "vif": ["K36R", "E63I", "V66I", "L91Q", "K92R", "H110C", "H127Q", "K155R", "K158R", "R181T"], "vpr": ["Q8H", "N16H", "S28N", "N41S", "H45Y", "N48S"], "vpu": ["L12F", "F16I", "V22M", "R31K", "V65A", "E66D", "M71R"]}, "labels": {"aa": "INT: E11D, I72V, T97A, A124G, D167E, K211R, L242P; RT-p51: V21I, K49R, I50V, D121Y, E169K, T173E, K174R, E203K, R284K, R307K, S376A, S379A, K395R; RT-p66: V21I, K49R, I50V, E169K, T173E, K174R, E203K, R284K, R307K, S376A, S379A, K395R, I452T, Q480H, Q487R, R530K; gp120: N1K, T3K, N5D, N52S, I56M, E59P, E74D, H77Q, -105S, -106N, -107S, -109T, -111S, -112N, N113S, S115V, -117S, -118P, -119D, -120I, -121M, -122T, D139N, K143Q, N158S, N161K, S162N, K204N, P210S, E240G, E241D, E267V, T269Y, A301T, G307E, K308R, N311S, K316R, K334T, F355L, N368D, -371I, -372E, -373A, -374T, -380D, -381T, -382S, -384A, V402T, -433R, N436G, N437S, T439N, D446N, R472K; gp41: A14T, A30V, T96N, S101A, D109E, E110D, N133S, A156T, S157N, D163N, V178I, E272G, H276L, G286V, A289V, C290W, A306T, V321I; nef: S3N, S9-, I10-, V11-, G12-, I16V, A24P, D38A, R39K, A54D, R71K, V74I, F85V, Y115H, R151S, M173I, M182Q; p17: V7I, M31I, E73Q, K98M, D102E, S111N, A120T; p24: V59I, L83V, M96V; p6: F15L, F17L, A22P, S24P, P25-, E32D, *50L; p7: K7R, N8D, E21Q; pro: G40R, V77I; rev: E10D, I18L, L60P, T62S, S106P; tat: K8R, Q24N, K40Q, T57S, N64T; vif: K36R, E63I, V66I, L91Q, K92R, H110C, H127Q, K155R, K158R, R181T; vpr: Q8H, N16H, S28N, N41S, H45Y, N48S; vpu: L12F, F16I, V22M, R31K, V65A, E66D, M71R"}}}]}, {"name": "J_NODE_0000002", "node_attrs": {"div": 0.09264999999999998, "clade_membership": {"value": "J"}}, "branch_attrs": {"mutations": {"nuc": ["C281A", "A305T", "T422C", "G677A", "A678-", "C679-", "A680-", "C681-", "A682-", "G683-", "A685-", "G687-", "C688-", "G690-", "A692-", "A905G", "G998A", "G1139A", "A1644G", "G1743A", "A1771G", "C2671T", "A2815G", "C2975A", "G2980A", "A3192G", "C3223A", "C3252T", "A3781G", "A3816G", "A4178G", "T5027C", "A5042T", "T5424C", "-5809C", "-5810T", "-5811T", "-5816A", "-5819T", "C5869A", "C5884A", "G5948T", "C6026A", "G6121A", "G6593A", "A6712G", "-6833A", "-6834A", "A7216G", "A7315G", "T7921A", "C8277T", "-8490A", "A8846C", "C8978A", "C9047G"], "INT": ["K14R", "I135V"], "RT-p51": ["P294T", "A322T", "S359T", "K366R", "T386I"], "RT-p66": ["P294T", "A322T", "S359T", "K366R", "T386I"], "gp120": ["N5K", "A32S", "N57V", "E247K", "D309K", "-327N", "N437D"], "gp41": ["I4M", "F206L", "A325I"], "nef": ["A50T"], "p1": ["I5V"], "p17": ["Q116-", "A118-", "A120-"], "p6": ["A22T", "K31R"], "vpu": ["V65-", "L67K", "-68L"]}, "labels": {"aa": "INT: K14R, I135V; RT-p51: P294T, A322T, S359T, K366R, T386I; RT-p66: P294T, A322T, S359T, K366R, T386I; gp120: N5K, A32S, N57V, E247K, D309K, -327N, N437D; gp41: I4M, F206L, A325I; nef: A50T; p1: I5V; p17: Q116-, A118-, A120-; p6: A22T, K31R; vpu: V65-, L67K, -68L"}}, "children": [{"name": "KY392776", "node_attrs": {"div": 0.13634999999999997, "accession": "KY392776", "clade_membership": {"value": "J"}, "country": {"value": "CD"}, "date": {"value": 2002.0}, "Strain_name": {"value": "CG_0331_02V_NGSID13"}, "LANL_subtype": {"value": "J"}}, "branch_attrs": {"mutations": {"nuc": ["T95C", "C96T", "C151A", "C155A", "T156C", "T200C", "T201C", "A217G", "T227A", "A256-", "G265A", "C284T", "G298A", "A301T", "A371T", "G378A", "C379G", "A388G", "C435T", "T473A", "C510A", "C516T", "G534A", "C535A", "T575C", "G607A", "T610A", "T616A", "A618G", "G644A", "A706G", "C710T", "G712A", "T731C", "C767T", "A914G", "A920G", "T944G", "C950T", "G977A", "A980G", "G1078C", "A1127G", "T1182C", "C1187T", "A1193G", "G1232A", "T1237A", "A1263T", "A1265G", "T1292G", "G1313A", "T1403C", "G1424A", "G1488A", "T1511C", "G1589T", "C1598T", "G1673A", "C1676T", "A1694G", "C1721T", "-1746C", "-1747C", "-1748C", "C1749T", "T1752C", "C1754G", "C1755A", "C1756A", "G1757A", "A1758C", "A1760G", "C1767A", "A1777-", "T1790G", "T1796C", "A1841G", "G1849A", "T1909A", "G1968A", "G1972A", "A1976G", "T1978A", "G1979A", "C2062T", "A2063T", "A2108G", "C2149A", "C2201G", "G2210A", "T2326C", "A2332G", "T2338C", "A2344G", "G2422A", "C2449A", "A2455G", "T2479A", "G2518A", "T2520C", "C2596T", "T2607A", "A2629G", "G2656A", "A2665G", "G2674A", "T2694G", "G2716C", "A2722C", "T2723C", "A2726G", "A2727C", "A2842G", "C2857T", "C2885T", "G2926A", "A2959G", "C3013T", "G3059A", "A3082G", "C3095G", "T3096A", "C3100T", "A3145G", "A3162G", "A3163G", "G3226A", "G3340A", "C3436T", "G3442T", "G3493A", "C3500A", "C3504A", "C3508T", "G3520A", "T3545C", "A3547G", "T3550C", "T3566A", "G3595A", "A3622G", "G3631A", "A3651G", "G3676A", "G3685A", "C3688T", "C3712T", "A3736G", "C3751T", "C3763T", "T3850C", "A3989G", "G4060A", "A4107C", "T4153C", "G4186A", "A4195G", "A4276C", "A4293G", "C4534T", "A4555G", "G4616A", "G4622A", "C4715T", "G4770T", "A4774C", "T4776C", "T4858G", "G4864A", "G4878A", "A4904G", "T4932G", "T5003C", "A5056G", "G5066A", "G5131A", "A5140G", "G5143A", "C5149T", "A5154C", "T5170G", "A5226G", "T5228C", "A5230T", "C5281T", "G5359A", "G5382T", "T5391C", "A5432G", "C5514A", "G5538A", "A5545C", "C5555T", "T5600A", "T5612C", "A5644G", "T5656A", "T5684C", "A5687T", "T5688A", "G5700A", "A5720G", "G5747C", "A5784G", "A5793G", "G5808A", "T5834A", "T5835G", "G5842A", "A5845G", "A5865G", "A5907G", "T5944C", "A5964G", "G5972A", "C6004T", "G6019A", "A6023G", "A6059G", "A6076T", "C6115T", "A6118G", "A6130G", "C6172A", "A6174G", "-6175A", "A6176G", "C6177T", "T6178C", "C6183G", "T6184C", "A6186C", "A6188G", "C6190T", "T6196A", "T6199C", "A6200T", "-6201C", "T6202C", "T6205C", "-6208A", "-6209A", "-6210T", "-6211G", "-6212G", "-6213C", "-6214A", "-6215T", "-6216T", "-6217G", "-6218C", "-6219T", "-6220G", "-6221A", "-6222G", "-6223C", "-6224C", "-6225T", "-6226C", "-6228A", "T6256C", "A6266G", "G6277A", "A6286T", "A6316G", "C6317A", "C6318G", "A6329G", "A6339C", "C6347T", "T6355C", "G6394A", "C6427T", "C6469T", "C6496T", "A6529G", "G6532A", "A6535G", "T6562C", "A6574G", "A6577C", "C6607T", "C6618A", "C6632T", "A6638G", "C6660T", "C6666T", "C6667T", "A6682G", "-6699A", "A6703G", "T6735A", "A6742G", "C6752G", "A6753C", "C6758T", "A6764G", "C6766A", "G6771A", "A6778T", "C6797A", "T6799A", "A6801G", "A6812G", "G6821A", "T6828A", "-6830C", "-6831C", "-6832G", "-6835T", "A6839-", "A6840-", "A6841-", "A6848G", "A6854C", "T6863A", "C6864A", "A6865C", "G6866C", "G6867C", "T6876C", "A6887C", "C6888A", "T6953-", "G6954-", "G6955-", "-6983G", "-6984A", "-6985A", "-6989T", "A6990C", "-6991C", "C6993A", "-6994T", "-6995G", "-6996C", "-6997A", "-7007A", "-7008A", "-7009C", "A7026G", "A7032G", "A7033G", "G7042A", "A7045G", "C7107T", "A7108G", "C7127A", "A7148G", "A7149T", "G7160A", "T7165A", "G7168A", "C7170T", "G7190A", "T7217C", "A7234G", "G7238A", "G7240A", "C7264T", "G7343A", "C7392T", "G7438A", "G7453T", "A7470G", "G7492A", "G7513A", "T7555A", "G7633T", "A7641G", "A7666G", "A7676G", "T7681C", "G7688A", "G7689A", "A7690C", "T7692C", "A7701C", "T7708A", "C7747G", "G7753A", "G7754T", "G7765T", "G7769T", "A7791G", "A7818G", "A7820C", "A7822C", "A7862G", "G7871T", "C7874A", "T7879A", "G7915A", "A7938C", "A7947G", "G7965A", "T7968C", "C7969A", "A8014G", "G8019A", "C8047T", "T8091G", "T8171G", "G8182A", "A8193G", "A8204G", "A8216G", "A8273G", "G8274T", "G8276A", "C8296T", "T8323G", "T8337A", "-8354G", "-8367T", "-8368G", "-8369T", "A8388G", "A8461G", "G8476T", "C8480A", "G8499A", "C8500G", "T8501G", "C8503A", "G8531T", "A8549G", "T8568G", "G8590C", "T8640C", "G8666C", "C8684T", "C8711T", "A8739G", "T8766C", "G8767C", "C8768A", "A8770T", "A8804G", "A8812C", "A8815C", "A8827G", "T8835C", "A8859C", "G8861A", "A8870C", "A8873G", "G8875A", "T8887A", "A8892C", "G8902C", "T8903G", "T8904A", "T8972A", "C8979T", "T9074G", "T9084A", "G9085A", "C9181T"], "INT": ["I72V", "K111T", "K173R", "V281M", "G283S"], "RT-p51": ["I5V", "Q36E", "A39T", "D121Y", "I142T", "F171Y", "I178M", "E207D", "K211A", "D248E", "L334E", "K356R"], "RT-p66": ["I5V", "Q36E", "A39T", "I142T", "F171Y", "I178M", "E207D", "K211A", "L334E", "K356R", "E449D", "L469I", "T470N", "L491I", "N519S"], "gp120": ["E4G", "K18R", "K37G", "V40I", "L58M", "K69E", "E74D", "-105D", "-106I", "-107R", "-109S", "-111A", "-112T", "N113R", "S114N", "R138G", "E144D", "P155R", "D157S", "N158D", "N160D", "E241D", "T255N", "L260F", "T269I", "P271L", "I281M", "Q300A", "H302Y", "N304E", "S306N", "R315K", "K316R", "K320E", "E323K", "F325Y", "-326P", "K329-", "K334Q", "S337N", "G338P", "I341P", "T345Q", "W367-", "N368-", "N369-", "S370-", "-375E", "-376N", "-377S", "-378N", "-379A", "-380N", "K391R", "K393R", "T418M", "L425I", "N432V", "-433N", "T439I", "D446N", "E462K"], "gp41": ["A14T", "A30V", "K56R", "E110D", "E113G", "E119Q", "G129N", "I130T", "N133T", "D148E", "A151S", "K154N", "A156S", "D163S", "K172R", "I173L", "I187V", "V190L", "L191I", "N212T", "E215G", "G221E", "I222T", "F263C", "H276R", "A289V", "C290V", "K297R", "I301V", "N305D", "R324V", "L345Q"], "nef": ["S9C", "I16V", "H40R", "S45I", "S46R", "A53R", "A54D", "E63D", "L76V", "G83A", "S88G", "E108D", "I133V", "C142P", "Y143F", "N157T", "E158A", "N162S", "M173L", "E176D", "R178K", "M182K", "K184Q", "S187T", "S188T"], "p17": ["K12N", "A15R", "K18R", "Q59K", "A67N", "R91K", "I92K", "I94K", "K95E", "K114E", "K117-", "N124G", "S126N"], "p2": ["T8N"], "p24": ["L6V", "D71E", "L83M", "G116A", "F169Y", "T178S", "D187E"], "p6": ["-26K", "P30T", "K33-", "*50L"], "p7": ["K41N"], "pro": ["I15V", "D37E", "R57K", "N60E", "D61N", "M89L"], "rev": ["S8N", "E10D", "K30N", "S56G", "P67S", "A112T"], "tat": ["E2D", "K19R", "V36M", "T57P", "P60L", "T77P", "K80E", "E86K", "S87Q"], "vif": ["A62S", "E63T", "L91R", "R93K", "V98I", "S116A", "K157R", "G182D", "E185G", "S186N", "T188I", "N190H"], "vpr": ["E17A", "N41S", "R85Q", "A93S", "S96P"], "vpu": ["I2T", "I13V", "F17I", "L18I", "V26A", "Y27L", "K38R", "R47T", "L76Q", "V79I", "N80D"]}, "labels": {"aa": "INT: I72V, K111T, K173R, V281M, G283S; RT-p51: I5V, Q36E, A39T, D121Y, I142T, F171Y, I178M, E207D, K211A, D248E, L334E, K356R; RT-p66: I5V, Q36E, A39T, I142T, F171Y, I178M, E207D, K211A, L334E, K356R, E449D, L469I, T470N, L491I, N519S; gp120: E4G, K18R, K37G, V40I, L58M, K69E, E74D, -105D, -106I, -107R, -109S, -111A, -112T, N113R, S114N, R138G, E144D, P155R, D157S, N158D, N160D, E241D, T255N, L260F, T269I, P271L, I281M, Q300A, H302Y, N304E, S306N, R315K, K316R, K320E, E323K, F325Y, -326P, K329-, K334Q, S337N, G338P, I341P, T345Q, W367-, N368-, N369-, S370-, -375E, -376N, -377S, -378N, -379A, -380N, K391R, K393R, T418M, L425I, N432V, -433N, T439I, D446N, E462K; gp41: A14T, A30V, K56R, E110D, E113G, E119Q, G129N, I130T, N133T, D148E, A151S, K154N, A156S, D163S, K172R, I173L, I187V, V190L, L191I, N212T, E215G, G221E, I222T, F263C, H276R, A289V, C290V, K297R, I301V, N305D, R324V, L345Q; nef: S9C, I16V, H40R, S45I, S46R, A53R, A54D, E63D, L76V, G83A, S88G, E108D, I133V, C142P, Y143F, N157T, E158A, N162S, M173L, E176D, R178K, M182K, K184Q, S187T, S188T; p17: K12N, A15R, K18R, Q59K, A67N, R91K, I92K, I94K, K95E, K114E, K117-, N124G, S126N; p2: T8N; p24: L6V, D71E, L83M, G116A, F169Y, T178S, D187E; p6: -26K, P30T, K33-, *50L; p7: K41N; pro: I15V, D37E, R57K, N60E, D61N, M89L; rev: S8N, E10D, K30N, S56G, P67S, A112T; tat: E2D, K19R, V36M, T57P, P60L, T77P, K80E, E86K, S87Q; vif: A62S, E63T, L91R, R93K, V98I, S116A, K157R, G182D, E185G, S186N, T188I, N190H; vpr: E17A, N41S, R85Q, A93S, S96P; vpu: I2T, I13V, F17I, L18I, V26A, Y27L, K38R, R47T, L76Q, V79I, N80D"}}}, {"name": "J_NODE_0000003", "node_attrs": {"div": 0.09944999999999998, "clade_membership": {"value": "J"}}, "branch_attrs": {"mutations": {"nuc": ["T396C", "A557G", "G614C", "G747A", "G761A", "T926G", "A1002G", "A1028G", "T1253C", "A1430G", "G1562A", "A1691G", "A1733G", "G1855A", "G2156A", "A2407G", "T2536C", "A2825G", "G2951A", "G4267A", "G4677A", "A4693G", "C4761T", "C4988A", "T5073C", "A5482T", "A5567C", "C5704A", "G5737A", "G5775A", "G6055A", "T6154C", "A6198C", "A6203C", "G6204C", "A6330G", "A6568G", "A6616G", "T6637C", "C6815T", "-6835G", "-6965A", "-6967T", "-6968G", "-6971A", "-6973T", "T7099C", "A7237G", "C7250T", "G7640A", "C7658G", "T7864C", "G8264A", "A8275G", "T8293A", "C8488T", "G8561A", "T8594C"], "INT": ["D167E"], "RT-p51": ["V21I"], "RT-p66": ["V21I"], "gp120": ["M67I", "R315H"], "gp41": ["E113N", "N239S", "V321I"], "nef": ["A49V"], "p17": ["E93D"], "p24": ["L6M", "I91V"], "rev": ["I18L"], "tat": ["V36L", "N64T"], "vif": ["K36R", "D134E"], "vpu": ["D44N"]}, "labels": {"aa": "INT: D167E; RT-p51: V21I; RT-p66: V21I; gp120: M67I, R315H; gp41: E113N, N239S, V321I; nef: A49V; p17: E93D; p24: L6M, I91V; rev: I18L; tat: V36L, N64T; vif: K36R, D134E; vpu: D44N"}}, "children": [{"name": "KU310620", "node_attrs": {"div": 0.1304, "accession": "KU310620", "clade_membership": {"value": "J"}, "country": {"value": "AO"}, "date": {"value": 1993.0}, "Strain_name": {"value": "93AOHDC253"}, "LANL_subtype": {"value": "J"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "A417C", "G425A", "G480A", "A500T", "C510A", "T520C", "C528G", "A529G", "G534T", "A700G", "G705A", "C774A", "G1016A", "A1049G", "T1064C", "G1089A", "T1136C", "A1241G", "A1242G", "C1243T", "A1250G", "A1263T", "A1265C", "A1278G", "A1279G", "A1289T", "G1350T", "A1447C", "G1488A", "G1493A", "A1543G", "G1657A", "G1661A", "C1767A", "G1773A", "-1775A", "-1776C", "C1782T", "A1804G", "C1826T", "T1828A", "A1832C", "G1839A", "G1846A", "C1853A", "C1903T", "G2059A", "A2125C", "A2140T", "A2215C", "A2221G", "A2419G", "C2449T", "T2456C", "C2464T", "T2499C", "A2500T", "C2503T", "C2511G", "A2512G", "T2579A", "A2626C", "G2630T", "G2704A", "A2839C", "C2885T", "T2905A", "C2927T", "A2928G", "A2929T", "A2956G", "A2959G", "G2999A", "G3019A", "T3024C", "G3059A", "A3071G", "G3080A", "G3142A", "G3211A", "C3232T", "C3346T", "C3359T", "A3379G", "A3457G", "G3467A", "T3496C", "C3500T", "C3530T", "G3565A", "A3568T", "G3607A", "C3620A", "A3621T", "G3647A", "G3775A", "T3793G", "A3796G", "T3799C", "G3808C", "A3814C", "T3977C", "G4060A", "A4063G", "T4070C", "T4110C", "C4135T", "T4147C", "A4196G", "C4258T", "G4689A", "C4721T", "C4724T", "C4771G", "G4856A", "G4859A", "T4907A", "C4976T", "A5059G", "T5197C", "C5213A", "C5214T", "A5233G", "G5236A", "T5339C", "C5393T", "C5397A", "A5398G", "G5403T", "T5412C", "G5448A", "T5562C", "C5602T", "T5604G", "A5644G", "A5659C", "G5662A", "C5663A", "A5664C", "A5665T", "G5671A", "G5673A", "C5679T", "T5684C", "G5699A", "G5706A", "A5720G", "A5796G", "T5836G", "T5843G", "T5857A", "A5866G", "A5867C", "T5911G", "A5964G", "G5972A", "T5980C", "A5995T", "A6007G", "G6019A", "A6023G", "A6026T", "A6030G", "A6037T", "A6059G", "A6170C", "A6173C", "-6175G", "C6183A", "A6186G", "G6195A", "A6197T", "A6200C", "-6201C", "-6228A", "A6279G", "C6298T", "G6314A", "C6318A", "A6329G", "T6331A", "A6333C", "A6335G", "T6340C", "T6345G", "G6466A", "C6469T", "A6489C", "A6640C", "C6660T", "C6666T", "-6686A", "-6687G", "-6688T", "-6689A", "-6690T", "-6691A", "G6692C", "T6694C", "A6697-", "C6698-", "C6700-", "A6701-", "T6702-", "A6723T", "A6730T", "G6734A", "A6743G", "C6758T", "G6771A", "G6773A", "A6780T", "A6789G", "G6806A", "C6807T", "C6810G", "A6818G", "G6819A", "T6849G", "T6876A", "A6884G", "A6935G", "G6948T", "T6949A", "A6950C", "G6951C", "T6952A", "T6953G", "G6955C", "-6966A", "-6969G", "-6970C", "-6972G", "-6974G", "-6975G", "-6976G", "-6977A", "-6978A", "-6979A", "-6980G", "-6981A", "-6982G", "-6983A", "-6984C", "-6985T", "-6989A", "-6991G", "-6994T", "-6995A", "-6996A", "-6997T", "A7027G", "G7056A", "C7127T", "A7147T", "C7153T", "G7168A", "C7170T", "A7210G", "G7256A", "G7269A", "A7290C", "C7392T", "C7597T", "T7630G", "A7655T", "A7666G", "G7668A", "A7722C", "A7790G", "T7801C", "A7819G", "C7843A", "A7921G", "A7943C", "C8047T", "G8079A", "A8080C", "G8130A", "T8169C", "T8171G", "G8173A", "T8176C", "A8196C", "G8231A", "C8232T", "A8284G", "C8291A", "-8354T", "-8367A", "-8368G", "-8369T", "T8375A", "A8446G", "A8453G", "T8501G", "A8573G", "G8604A", "T8672C", "C8676T", "G8678A", "T8685C", "T8740C", "C8756T", "T8789C", "G8834A", "G8861A", "A8922G", "A8978G"], "INT": ["D6E", "E11D", "E13D", "F99L", "V112A", "I141V"], "RT-p51": ["E40D", "D121H", "I135T", "T139R", "C162S", "E177D", "V179F", "R200I", "I244V", "Q278C", "A286T", "E302K", "L310P", "I326V", "V329I"], "RT-p66": ["E40D", "Y121H", "I135T", "T139R", "C162S", "E177D", "V179F", "R200I", "I244V", "E248D", "Q278C", "A286T", "E302K", "L310P", "I326V", "V329I", "V458I", "L491F", "Q509I", "V518I"], "gp120": ["N1K", "K5Q", "D19E", "K37G", "V40I", "E59G", "K69E", "-105D", "-106A", "-107K", "N108L", "-109Q", "-111N", "-112T", "S115P", "S116P", "K142R", "V154I", "P155Q", "N159G", "N160T", "N161G", "S162N", "I164S", "K212T", "E262N", "T269I", "P271L", "G278S", "H280R", "L289F", "Y290A", "A291T", "T292G", "G293D", "E294I", "N297D", "H302Y", "S306N", "G307R", "K309I", "N312S", "A318I", "A319G", "R322E", "-326K", "N328-", "V332S", "I341Q", "M344V", "K361E", "S365I", "S366P", "W367G", "N369G", "-371G", "-372K", "-373E", "-374T", "-375S", "-376N", "-377K", "-378T", "-379N", "R401K", "N432K", "-433G", "T439I", "V468I", "R472K", "E479A"], "gp41": ["A30V", "D109E", "I118L", "R122K", "D125N", "N140T", "T214P", "R259H", "C290V", "N298T", "A310I", "I325V", "L330I", "L340F"], "nef": ["K4N", "Q35R", "Y115H", "I133T", "M173I", "I194V"], "p1": ["S9N"], "p17": ["A15T", "K28Q", "G49S", "E55D", "Q59K", "V62A", "Q65G", "A67S", "K114E", "K117-", "K122R"], "p24": ["L15I", "L83I", "G120S", "T171V", "T178S", "N183G", "A207S"], "p6": ["P30T", "E32K", "K33Q", "K42R"], "p7": ["K26R"], "pro": ["T12P", "R14K", "L19I"], "rev": ["V16A", "N32T", "P67S", "I78L", "V109I", "E116D"], "tat": ["P6L", "N7K", "I8V", "E9D", "Q78H"], "vif": ["V31I", "A35T", "A62G", "E63K", "K158R"], "vpr": ["P37I"], "vpu": ["I13V", "A19N", "I20L", "V22I", "V26A", "R31K", "L33I", "K38R", "W77G", "V79G"]}, "labels": {"aa": "INT: D6E, E11D, E13D, F99L, V112A, I141V; RT-p51: E40D, D121H, I135T, T139R, C162S, E177D, V179F, R200I, I244V, Q278C, A286T, E302K, L310P, I326V, V329I; RT-p66: E40D, Y121H, I135T, T139R, C162S, E177D, V179F, R200I, I244V, E248D, Q278C, A286T, E302K, L310P, I326V, V329I, V458I, L491F, Q509I, V518I; gp120: N1K, K5Q, D19E, K37G, V40I, E59G, K69E, -105D, -106A, -107K, N108L, -109Q, -111N, -112T, S115P, S116P, K142R, V154I, P155Q, N159G, N160T, N161G, S162N, I164S, K212T, E262N, T269I, P271L, G278S, H280R, L289F, Y290A, A291T, T292G, G293D, E294I, N297D, H302Y, S306N, G307R, K309I, N312S, A318I, A319G, R322E, -326K, N328-, V332S, I341Q, M344V, K361E, S365I, S366P, W367G, N369G, -371G, -372K, -373E, -374T, -375S, -376N, -377K, -378T, -379N, R401K, N432K, -433G, T439I, V468I, R472K, E479A; gp41: A30V, D109E, I118L, R122K, D125N, N140T, T214P, R259H, C290V, N298T, A310I, I325V, L330I, L340F; nef: K4N, Q35R, Y115H, I133T, M173I, I194V; p1: S9N; p17: A15T, K28Q, G49S, E55D, Q59K, V62A, Q65G, A67S, K114E, K117-, K122R; p24: L15I, L83I, G120S, T171V, T178S, N183G, A207S; p6: P30T, E32K, K33Q, K42R; p7: K26R; pro: T12P, R14K, L19I; rev: V16A, N32T, P67S, I78L, V109I, E116D; tat: P6L, N7K, I8V, E9D, Q78H; vif: V31I, A35T, A62G, E63K, K158R; vpr: P37I; vpu: I13V, A19N, I20L, V22I, V26A, R31K, L33I, K38R, W77G, V79G"}}}, {"name": "EF614151", "node_attrs": {"div": 0.14669, "accession": "EF614151", "clade_membership": {"value": "J"}, "country": {"value": "CD"}, "date": {"value": 1997.0}, "Strain_name": {"value": "J_97DC_KTB147"}, "LANL_subtype": {"value": "J"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "T355A", "T357A", "T358G", "A359C", "G361T", "A369G", "A371G", "T373C", "A374C", "T377A", "A386G", "C393T", "C403G", "G405C", "A411G", "A426C", "T427G", "G428A", "C435A", "T466A", "G489T", "C493G", "T504G", "C507G", "A512G", "C525A", "C535A", "C540T", "G542A", "A549G", "A554G", "T560A", "A571T", "T575C", "T580A", "C603T", "A619G", "A632G", "A654C", "C657T", "C672G", "G675A", "-678G", "-679C", "-680T", "-681A", "-682A", "-683G", "-684A", "-685A", "-686A", "-687G", "-688A", "-689A", "A697T", "G705T", "C719G", "A725C", "G738T", "G743A", "C750T", "C756G", "C760T", "T788A", "A806G", "A809G", "C823G", "G829A", "A839G", "C875T", "T947C", "A978C", "A980C", "C1013T", "C1060A", "G1078C", "G1085A", "C1096A", "T1118C", "C1137T", "C1143T", "A1157G", "A1193G", "A1226G", "C1325T", "T1335C", "A1339G", "G1395A", "G1399T", "C1401T", "T1403C", "G1404A", "A1411G", "G1424T", "C1426G", "G1436A", "G1466A", "A1486G", "A1489G", "A1496G", "T1501G", "G1508A", "C1523T", "C1547T", "G1577A", "A1580G", "G1604A", "G1608A", "T1628C", "G1643A", "G1697A", "G1718A", "G1734-", "A1735-", "G1736-", "T1741A", "A1742G", "C1744T", "C1745A", "-1746A", "-1747C", "-1748T", "C1756A", "G1766A", "G1773-", "A1774-", "-1776A", "G1784A", "T1792C", "A1794G", "T1828C", "A1835G", "A1841G", "C1853T", "C1903A", "C2149T", "G2177A", "A2178G", "A2189G", "C2211A", "T2315-", "A2329G", "A2332G", "G2431A", "G2530A", "G2548A", "A2612G", "A2627G", "T2694A", "A2695G", "G2713A", "A2727G", "T2749C", "T2770C", "A2827C", "G2833A", "G2846A", "A2847G", "G2872A", "A2965G", "A2975G", "G2998A", "C3002T", "C3133T", "G3200A", "A3205G", "T3225G", "G3226C", "A3238G", "A3283G", "G3292A", "T3310C", "G3344A", "A3348T", "T3358C", "C3376T", "G3427A", "C3504A", "T3566C", "T3567A", "G3631A", "C3649T", "G3685A", "C3691T", "G3766A", "C3773T", "C3779T", "A3795G", "G3916A", "A3937G", "A3955G", "T3967C", "G4010A", "A4087G", "A4107G", "T4177G", "A4391T", "C4428T", "T4585C", "A4674C", "T4678A", "A4737G", "T4742C", "G4767T", "A4768G", "A4773G", "T4776C", "G4802A", "T4917C", "C4937A", "T4938G", "C5019T", "A5021G", "A5057G", "A5090G", "G5128A", "T5188A", "G5257A", "C5294T", "A5305G", "A5360C", "G5382T", "A5421G", "C5444A", "T5457C", "A5462G", "A5480C", "T5515C", "A5545G", "C5554T", "A5588G", "T5600A", "A5611C", "T5612A", "C5620G", "A5622T", "C5639G", "T5653G", "T5656A", "A5665G", "G5668A", "A5687T", "A5704G", "T5736C", "T5772C", "A5793T", "C5797-", "T5798-", "-5800T", "-5801T", "G5808A", "G5817A", "C5859G", "A5861G", "G5963A", "C5965A", "C6014A", "A6015G", "T6024C", "C6052T", "G6088T", "T6169G", "-6175C", "C6177A", "A6180G", "A6197C", "-6201G", "-6206A", "-6207C", "-6208T", "-6209A", "-6210T", "-6211C", "-6212A", "-6213C", "-6214T", "-6215A", "-6216A", "-6217T", "-6218C", "-6219C", "-6220T", "-6221C", "-6222T", "-6223T", "-6224G", "-6225G", "G6227-", "T6256C", "A6266G", "A6273G", "G6303A", "C6317T", "A6339G", "C6401G", "A6451G", "G6463T", "A6481G", "A6535G", "G6572A", "A6578G", "G6588A", "T6592C", "A6631G", "A6638C", "T6652C", "G6653A", "G6655T", "A6685G", "-6699C", "C6721A", "T6745C", "A6776G", "C6777T", "C6790T", "G6802A", "C6810A", "A6812G", "C6826A", "A6848G", "A6854G", "A6855C", "C6875A", "C6888T", "A6889G", "A6913G", "T6922C", "A6936T", "-6956G", "-6957A", "-6958T", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964C", "-6966C", "-6969T", "-6970G", "-6972C", "-6974A", "-6975T", "A6986-", "A6987-", "T6988-", "A6990-", "A6992-", "C6993-", "-7000A", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "-7006A", "-7007A", "-7008C", "-7009A", "A7010G", "A7032G", "A7123G", "A7152C", "T7156G", "G7160A", "A7161G", "C7164G", "G7212A", "G7232A", "G7238A", "A7241G", "G7343A", "A7376G", "A7399G", "A7470G", "G7508A", "C7590A", "T7624C", "T7625C", "A7655G", "G7669A", "A7676G", "G7688A", "A7711G", "A7713T", "G7715T", "T7751C", "T7757C", "G7769A", "A7782G", "C7792G", "A7818G", "T7912C", "A7947G", "C7950T", "C7960A", "G7965A", "A8032G", "A8055G", "C8065T", "C8103T", "A8119G", "T8167G", "A8170G", "T8172G", "G8173T", "A8241C", "G8254A", "C8268T", "A8273G", "G8276A", "T8278A", "T8290C", "G8319A", "T8320A", "T8321C", "T8322A", "T8323G", "G8324-", "A8325-", "A8326-", "A8327-", "G8328-", "G8329-", "G8330-", "C8331-", "T8332-", "T8333-", "T8334-", "G8335-", "C8336-", "T8337-", "A8338-", "T8339-", "A8340-", "A8341-", "A8342-", "A8343-", "T8344-", "G8345-", "G8346-", "G8347-", "G8348-", "G8349-", "G8350-", "C8351-", "A8352-", "A8353-", "T8355-", "G8356-", "G8357-", "T8358-", "C8359-", "A8360-", "A8361-", "A8362-", "A8363-", "A8364-", "G8365-", "T8366-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374C", "C8382T", "T8426A", "T8440C", "A8490G", "C8491A", "T8492A", "G8499A", "C8500G", "A8519G", "A8526G", "C8527A", "G8567A", "T8603C", "C8606G", "C8688A", "T8701A", "A8726G", "C8741T", "A8793G", "G8805A", "A8806G", "T8810C", "G8822A", "A8823G", "T8829C", "A8873C", "G8902C", "A8909G", "C8921T", "A8924G", "G8955A", "A8967G", "C8979A", "G9016C", "C9018T"], "INT": ["K7R", "I60M", "V79I", "K111R", "T206S", "T218I"], "RT-p51": ["E28R", "K32E", "A39E", "L74-"], "RT-p66": ["E28R", "K32E", "A39E", "L74-"], "gp120": ["A2G", "T3A", "Q54R", "V57T", "L58M", "E78D", "N108-", "T110-", "N113-", "S114-", "S115-", "S116-", "M126A", "R138G", "K140R", "R150K", "P155S", "N159S", "N161S", "Q183E", "K203N", "E240K", "I242V", "R245K", "E262Q", "E267N", "H280P", "E294A", "T308V", "A319E", "K320E", "H324Q", "F325E", "-326H", "N327F", "K334A", "T345M", "K361I", "N368D", "-371T", "-372V", "-385T", "K393R", "-433T", "N434K", "N436S", "D437S", "S453N", "V460I", "E462K", "I463V"], "gp41": ["A14T", "T25A", "K56R", "V69I", "T96N", "Y108H", "I118V", "G129R", "E137V", "A138S", "A156T", "N160S", "D163K", "K172R", "E215G", "A216V", "G221E", "N251S", "A267V", "H276R", "A289V", "E313A", "A322V", "R324G", "G339E", "L340Q"], "nef": ["P14S", "A24T", "D28E", "V33A", "T50E", "A53S", "T62E", "S88G", "H116N", "F120Y", "R151G", "E155R", "N161D", "C163R", "E177D", "S187T", "I194M", "D205N"], "p17": ["V7E", "L8S", "S9I", "K12E", "L13S", "D14E", "R20W", "P23R", "G24R", "K26E", "M31R", "L34I", "F44Y", "E52*", "S53*", "C57G", "Q58E", "L64I", "A67D", "Q69*", "T72A", "Y79F", "V82E", "Q90*", "K95R", "I107L", "Q108*", "Q113E", "-116K", "-118E", "-119A", "-120V", "D121K", "K123Y", "N125S", "S126-", "Q130H"], "p2": ["A1G", "M4I", "T8N", "-12I"], "p24": ["V3L", "Q7*", "Q9E", "P10L", "A31G", "S33N", "T110N", "G116A", "M118I", "P122G", "K203R", "G222R", "G223V", "P224S", "G225S", "K227R", "L231F"], "p6": ["E19-", "I21K", "T22I", "P23T", "S24P", "P25S", "-26Q", "E32-", "L38S", "T39A", "*50S"], "p7": ["K7R", "N8G", "I12S", "W37*", "M46I", "D48N"], "pro": ["I13V", "I15V", "D35E"], "rev": ["S25G", "T62A", "L73F", "N91D", "C107G", "S108V", "V109L"], "tat": ["E2D", "T23N", "K29R", "Q35P", "Y47H", "T57A", "P60S", "E71G", "K80E", "P81S", "P84Q", "E86K"], "vif": ["N30H", "V31N", "I51V", "D61C", "Y111H", "D117E", "S118A", "R181K"], "vpr": ["S28R", "A93S"], "vpu": ["I2Q", "Q5D", "A11G", "F16V", "F17I", "L18I", "I20V", "V21I", "Y27F", "L33V", "E62D"]}, "labels": {"aa": "INT: K7R, I60M, V79I, K111R, T206S, T218I; RT-p51: E28R, K32E, A39E, L74-; RT-p66: E28R, K32E, A39E, L74-; gp120: A2G, T3A, Q54R, V57T, L58M, E78D, N108-, T110-, N113-, S114-, S115-, S116-, M126A, R138G, K140R, R150K, P155S, N159S, N161S, Q183E, K203N, E240K, I242V, R245K, E262Q, E267N, H280P, E294A, T308V, A319E, K320E, H324Q, F325E, -326H, N327F, K334A, T345M, K361I, N368D, -371T, -372V, -385T, K393R, -433T, N434K, N436S, D437S, S453N, V460I, E462K, I463V; gp41: A14T, T25A, K56R, V69I, T96N, Y108H, I118V, G129R, E137V, A138S, A156T, N160S, D163K, K172R, E215G, A216V, G221E, N251S, A267V, H276R, A289V, E313A, A322V, R324G, G339E, L340Q; nef: P14S, A24T, D28E, V33A, T50E, A53S, T62E, S88G, H116N, F120Y, R151G, E155R, N161D, C163R, E177D, S187T, I194M, D205N; p17: V7E, L8S, S9I, K12E, L13S, D14E, R20W, P23R, G24R, K26E, M31R, L34I, F44Y, E52*, S53*, C57G, Q58E, L64I, A67D, Q69*, T72A, Y79F, V82E, Q90*, K95R, I107L, Q108*, Q113E, -116K, -118E, -119A, -120V, D121K, K123Y, N125S, S126-, Q130H; p2: A1G, M4I, T8N, -12I; p24: V3L, Q7*, Q9E, P10L, A31G, S33N, T110N, G116A, M118I, P122G, K203R, G222R, G223V, P224S, G225S, K227R, L231F; p6: E19-, I21K, T22I, P23T, S24P, P25S, -26Q, E32-, L38S, T39A, *50S; p7: K7R, N8G, I12S, W37*, M46I, D48N; pro: I13V, I15V, D35E; rev: S25G, T62A, L73F, N91D, C107G, S108V, V109L; tat: E2D, T23N, K29R, Q35P, Y47H, T57A, P60S, E71G, K80E, P81S, P84Q, E86K; vif: N30H, V31N, I51V, D61C, Y111H, D117E, S118A, R181K; vpr: S28R, A93S; vpu: I2Q, Q5D, A11G, F16V, F17I, L18I, I20V, V21I, Y27F, L33V, E62D"}}}]}]}]}]}, {"name": "results/subtype_trees/CRF11_cpx.nwk", "node_attrs": {"div": 0.07951, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C153T", "C155T", "A161C", "-166G", "-167G", "A425G", "T467C", "G480A", "G524A", "A540G", "A541G", "T549A", "A632G", "-714A", "A803G", "A810G", "A899G", "G998A", "T1052A", "A1101G", "A1123G", "G1192A", "T1214C", "T1280C", "T1322C", "A1329T", "G1355A", "C1362T", "A1418G", "A1449C", "-1452A", "-1455A", "-1456A", "-1457T", "C1460-", "T1511C", "A1586G", "T1616C", "A1657G", "A1691G", "-1775G", "G1845C", "A1920G", "C1985A", "A2023G", "C2263T", "A2275G", "T2299C", "A2320T", "C2326T", "T2453C", "G2462A", "A2463G", "T2536C", "A2566G", "A2569T", "C2605A", "T2620C", "C2638T", "T2653C", "A2662G", "G2683A", "C2694A", "A2698G", "A2699G", "G2704A", "A2713G", "G2714A", "A2716G", "A2727G", "T2737C", "C2749T", "T2779C", "A2794G", "G2821A", "G2951A", "A3001G", "T3118A", "A3192G", "A3193G", "A3208G", "G3211A", "G3221T", "C3222G", "A3226G", "G3250A", "C3252T", "A3279G", "A3280G", "T3328C", "T3355C", "G3398A", "C3449A", "A3484G", "A3487G", "T3493G", "T3497A", "G3520A", "T3530C", "C3533G", "C3567T", "C3577T", "G3595A", "A3604G", "A3607G", "C3610T", "A3651G", "A3769G", "A3816G", "T3829C", "A3877G", "T3889C", "T3977C", "T3991A", "C4079T", "T4144C", "G4156A", "A4195G", "A4225G", "A4243G", "T4276G", "C4288T", "A4397T", "A4531G", "A4543T", "A4650C", "C4667T", "T4679C", "A4697G", "T4703G", "A4721G", "A4735G", "T4742C", "T4772A", "A4773G", "T4868C", "T4969G", "C4976T", "C5028T", "A5036G", "C5038A", "A5046G", "A5056C", "A5059G", "C5091T", "G5094A", "A5140G", "C5160T", "A5161G", "C5162T", "G5167A", "T5170G", "G5173A", "G5176A", "A5185G", "A5186C", "T5194A", "A5215G", "C5227A", "G5236A", "T5251C", "C5294T", "A5312G", "A5324G", "C5361G", "A5362G", "G5372C", "T5391C", "G5463A", "G5482T", "G5557A", "A5603-", "A5619G", "G5629A", "C5630G", "A5631C", "A5644G", "A5665G", "C5679T", "T5686G", "A5687G", "G5700A", "T5707C", "T5781A", "C5797-", "-5801C", "G5802A", "A5806C", "G5808T", "-5816A", "-5819T", "T5851C", "G5856A", "G5963A", "A6023C", "C6067T", "G6121A", "T6181-", "A6186-", "C6190-", "A6191-", "A6192-", "T6193-", "A6197-", "T6199-", "-6226A", "A6362G", "C6363T", "G6368A", "A6371G", "T6385C", "T6395A", "A6464G", "A6490G", "T6511C", "T6523C", "G6532A", "A6573G", "A6583G", "T6598C", "A6599T", "T6637C", "A6640T", "C6667T", "A6718T", "A6742G", "T6769C", "G6773A", "G6809A", "C6810A", "A6812C", "C6824A", "C6826A", "-6834A", "T6838C", "C6857A", "C6858A", "A6859C", "C6874T", "C6875T", "T6895C", "T6949C", "-6959A", "-6960A", "-6962A", "-6965A", "-6967T", "-6985A", "-6989A", "-6991C", "-7000A", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "-7006C", "-7007A", "-7008C", "-7009T", "C7012A", "A7015T", "A7033G", "C7045T", "G7088C", "C7096A", "T7099A", "C7101G", "A7102G", "C7107A", "T7114C", "G7132A", "A7147G", "T7156C", "A7158C", "-7162G", "A7225G", "A7237G", "G7244A", "T7325C", "A7447T", "G7453A", "G7519A", "A7552G", "T7604A", "C7605T", "G7657A", "T7692C", "A7701C", "T7702C", "A7705G", "A7706C", "G7759A", "G7807A", "G7892T", "T7893G", "T7912C", "G7944A", "G7992A", "G8017C", "C8051A", "C8112T", "T8155C", "T8169C", "T8172A", "T8182C", "G8185A", "A8191G", "G8216A", "G8264A", "C8277T", "T8281A", "A8311C", "T8323A", "A8342C", "G8348T", "C8351A", "T8375A", "A8390T", "T8440C", "C8445A", "C8480T", "C8488-", "C8491-", "T8492-", "T8507C", "T8558A", "C8603T", "T8675C", "C8690T", "A8754T", "C8755G", "A8804G", "G8864T", "G8915A", "A8977G", "C8978A", "C9078T"], "INT": ["K14R", "D167E", "I208L", "E256D"], "RT-p51": ["E6D", "D123S", "K174Q", "A200E", "I202V", "E207K", "K211R", "A286T", "S359T", "K366R", "A376C", "T386I", "K395R", "E404D", "V435I"], "RT-p66": ["D123S", "K174Q", "A200E", "I202V", "E207K", "K211R", "A286T", "S359T", "K366R", "A376C", "T386I", "K395R", "E404D", "V435I", "L452I", "Q480E", "S491L", "N519S"], "gp120": ["S1N", "N57P", "-105D", "-106V", "N113-", "K150R", "T170V", "I173V", "S181T", "E240G", "I242V", "I243R", "I249F", "G307K", "K320Q", "H324-", "P335N", "-378N", "-379N", "-380T", "-381E", "-383N", "-385T", "N414K", "T416R", "-436T", "E464K"], "gp41": ["F8L", "I130T", "N133T", "I135L", "V197C", "T270I", "D305N", "V321I", "F326L"], "nef": ["V33A", "Q35K", "D38E", "A50-", "S88G", "T138C", "E174D"], "p1": ["N9S"], "p17": ["G49S", "K69G", "S72T", "Q127K"], "p2": ["A11-"], "p24": ["I27V", "I124V", "K131R", "R154K", "N183G", "T200S"], "p6": ["D32E", "*50L"], "pro": ["G16A", "K41R", "D60E", "L63V"], "rev": ["E57Q", "A68E", "S103P", "A108T", "S112P", "G113R", "K115E"], "tat": ["K29R", "P59S", "Q60H", "G61S"], "vif": ["N22H", "K50R", "I128R", "T151K", "I154V", "K157T", "K158R", "V170T", "E185G", "H192C"], "vpr": ["T19M", "N28H", "I70V", "Q86G", "S96P"], "vpu": ["A8S", "I13V", "I20V", "F27G", "V65A", "E66Q"]}, "labels": {"aa": "INT: K14R, D167E, I208L, E256D; RT-p51: E6D, D123S, K174Q, A200E, I202V, E207K, K211R, A286T, S359T, K366R, A376C, T386I, K395R, E404D, V435I; RT-p66: D123S, K174Q, A200E, I202V, E207K, K211R, A286T, S359T, K366R, A376C, T386I, K395R, E404D, V435I, L452I, Q480E, S491L, N519S; gp120: S1N, N57P, -105D, -106V, N113-, K150R, T170V, I173V, S181T, E240G, I242V, I243R, I249F, G307K, K320Q, H324-, P335N, -378N, -379N, -380T, -381E, -383N, -385T, N414K, T416R, -436T, E464K; gp41: F8L, I130T, N133T, I135L, V197C, T270I, D305N, V321I, F326L; nef: V33A, Q35K, D38E, A50-, S88G, T138C, E174D; p1: N9S; p17: G49S, K69G, S72T, Q127K; p2: A11-; p24: I27V, I124V, K131R, R154K, N183G, T200S; p6: D32E, *50L; pro: G16A, K41R, D60E, L63V; rev: E57Q, A68E, S103P, A108T, S112P, G113R, K115E; tat: K29R, P59S, Q60H, G61S; vif: N22H, K50R, I128R, T151K, I154V, K157T, K158R, V170T, E185G, H192C; vpr: T19M, N28H, I70V, Q86G, S96P; vpu: A8S, I13V, I20V, F27G, V65A, E66Q", "clade": "CRF11_cpx"}}, "children": [{"name": "CRF11_cpx_NODE_0000001", "node_attrs": {"div": 0.08975, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A301G", "G317A", "A571T", "A585G", "C586T", "G614T", "T926A", "A978G", "A980G", "G1078C", "A1115T", "C1137T", "G1268A", "G1302A", "C1406T", "T1547C", "A1607G", "G1661A", "A1771G", "A1985G", "A2579T", "G2728A", "C2822G", "G3379A", "T3436C", "A3534C", "G3607T", "T3754C", "T3970C", "A4036G", "T4153A", "A4736G", "A4784G", "G4923C", "G5066A", "T5454C", "A5462G", "C5479T", "A5481T", "C5514A", "C5551T", "A5611C", "T5612A", "G5817A", "A5866C", "G5915A", "A6179G", "-6215G", "-6222A", "C6241T", "G6345T", "T6438A", "G6466T", "C6618A", "C6632T", "A6781G", "-6835T", "-6970G", "-6971A", "-6995A", "-6996A", "G7269A", "G7390A", "T7555A", "T7605G", "G7633T", "T7642A", "A7655T", "A7677G", "G7949C", "G8019A", "A8093G", "T8279G", "C8500A", "C8640T", "G9026A"], "RT-p51": ["S162C", "P243A"], "RT-p66": ["S162C", "P243A", "I452M", "E480A"], "gp120": ["D21N", "-107N", "R164M", "F195Y", "R243M", "T255N", "L260F", "-368N", "-372W", "E381K", "N418R", "R472K"], "gp41": ["I118L", "D125S", "I264V", "L326V"], "nef": ["T51-", "A53D", "K104R"], "p17": ["Y79F", "T84V", "E93D"], "p24": ["G116A", "E128D", "V191I"], "rev": ["S34T"], "tat": ["Q35Y", "K80N"], "vif": ["D113H"], "vpu": ["I2Q"]}, "labels": {"aa": "RT-p51: S162C, P243A; RT-p66: S162C, P243A, I452M, E480A; gp120: D21N, -107N, R164M, F195Y, R243M, T255N, L260F, -368N, -372W, E381K, N418R, R472K; gp41: I118L, D125S, I264V, L326V; nef: T51-, A53D, K104R; p17: Y79F, T84V, E93D; p24: G116A, E128D, V191I; rev: S34T; tat: Q35Y, K80N; vif: D113H; vpu: I2Q"}}, "children": [{"name": "KP718936", "node_attrs": {"div": 0.12467, "accession": "KP718936", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2004.0}, "Strain_name": {"value": "260_50"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C36A", "T200C", "T201C", "A214G", "T227A", "-304T", "G378A", "C379A", "A418G", "A419G", "C435T", "A461C", "A470G", "G495T", "A509G", "A516C", "C522A", "C558A", "A592G", "T593G", "G608A", "G615A", "A654G", "T662G", "A666G", "G686A", "G709A", "G762A", "G770A", "T890C", "A989G", "T1004C", "A1067G", "A1196G", "A1278G", "A1279G", "G1298A", "A1359T", "G1404A", "T1444-", "A1445-", "C1446-", "A1447C", "T1451A", "A1452T", "A1454T", "A1455G", "A1456C", "T1457A", "-1458A", "-1459A", "-1460T", "A1461G", "A1587C", "T1653C", "G1687A", "C1692A", "A1780G", "T1790C", "T1797G", "G1852T", "T1888C", "A1926G", "A2002G", "G2027A", "G2111A", "A2119G", "G2134A", "G2173A", "A2215C", "A2293G", "A2419G", "A2512G", "A2545G", "C2615A", "A2617C", "G2716C", "C2756T", "A2788G", "C2909G", "G2914A", "C2930T", "C2985A", "A3027G", "C3067G", "T3068C", "G3166A", "G3169A", "G3173A", "G3209A", "C3224A", "C3307A", "A3334G", "A3367G", "A3421C", "T3424C", "A3451G", "G3564A", "T3652C", "C3665G", "A3739G", "G3772A", "T3778C", "C3908A", "A3979G", "A4003G", "A4051G", "T4165C", "A4176G", "A4369G", "T4450C", "A4522G", "T4543G", "A4567G", "C4576T", "T4656C", "T4674C", "G4677A", "A4695G", "G4735A", "G4741A", "G4865A", "A4904G", "C5034T", "A5039G", "G5040A", "C5052T", "G5059A", "T5072C", "G5131A", "A5233G", "A5246G", "G5257A", "A5268T", "C5342T", "G5363A", "T5451C", "T5457C", "T5484A", "T5492C", "G5538A", "A5544T", "C5554T", "G5565A", "A5607G", "T5617C", "A5652T", "T5653A", "T5655C", "T5658A", "A5659-", "T5660-", "A5661-", "G5665A", "T5688C", "A5694G", "A5696G", "C5704G", "A5717G", "G5775A", "A5784G", "-5791G", "-5792A", "-5793G", "-5797T", "-5799G", "G5803A", "A5845G", "T5857C", "A5865G", "A5868G", "A5907G", "T5911A", "C5920T", "C5924T", "A5995G", "A6008G", "A6016G", "T6024G", "A6051C", "G6088A", "G6133A", "C6160A", "G6167A", "A6172C", "-6175C", "T6178G", "-6180A", "-6181A", "A6182T", "C6183G", "T6184C", "-6186C", "-6189G", "-6190G", "-6191A", "-6192A", "-6193T", "-6194A", "-6195A", "-6196C", "-6197A", "-6198C", "-6199T", "-6216C", "-6217G", "-6218A", "-6219T", "-6220G", "-6221A", "-6223T", "-6225A", "A6226G", "A6230T", "A6251G", "T6264C", "G6267C", "A6273G", "T6287C", "A6311G", "A6326G", "T6328A", "C6370G", "T6460A", "A6462C", "G6463T", "A6471G", "G6490A", "G6498C", "G6572A", "G6577A", "A6581G", "A6584C", "G6605A", "G6611A", "C6612A", "G6631A", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6745C", "A6773G", "A6800G", "A6809C", "G6821A", "A6823G", "A6824-", "A6825-", "A6857G", "C6859A", "T6860A", "C6861G", "T6875G", "C6919T", "T6928C", "A6947G", "T6952A", "A6959-", "A6960-", "A6962-", "-6966A", "-6968T", "-6969G", "-6972A", "-6973T", "-6974G", "-6975G", "-6976C", "-6977A", "-6978A", "-6979T", "-6980G", "-6981G", "-6982G", "-6983A", "-6984A", "A6986G", "A6987G", "T6988A", "A6992C", "C6993T", "-6994G", "-6997A", "-6998G", "-6999G", "A7005G", "T7045G", "A7055G", "A7096G", "A7100G", "G7101A", "A7107G", "C7124T", "T7153C", "A7154C", "C7156G", "T7159A", "G7160A", "G7162T", "A7163-", "C7164-", "C7182T", "T7192C", "A7258G", "G7322A", "C7328G", "G7343A", "A7427G", "G7441A", "T7444C", "T7462A", "A7470G", "G7508A", "G7534A", "A7589C", "A7590G", "C7603T", "A7604G", "G7605A", "A7626T", "G7631T", "G7640A", "A7642G", "A7666T", "A7673G", "G7717A", "C7747A", "C7755A", "A7759G", "C7792T", "A7918G", "T7921C", "A7938G", "A7941G", "A7942T", "A7943C", "G7962A", "A8014G", "C8044G", "C8048T", "C8080A", "A8118G", "A8119G", "C8146T", "T8209C", "T8210C", "C8232T", "A8263G", "A8271G", "A8272T", "G8276A", "A8288T", "C8293T", "C8294A", "A8314G", "G8317A", "T8321G", "T8322C", "A8323C", "G8335A", "A8364C", "C8369A", "G8387A", "C8406A", "C8412T", "C8460T", "T8480C", "C8485T", "-8488G", "A8489T", "A8493-", "C8494-", "T8495-", "G8508A", "G8534T", "A8558G", "T8568A", "T8585C", "G8590C", "A8653G", "C8684T", "T8704G", "A8717G", "C8756T", "G8804A", "T8829A", "A8858G", "T8864C", "A8874G", "G8917A", "G8945C", "G8991A", "C9017T", "C9018T", "T9072G", "A9095G"], "INT": ["L45I", "N134G", "D256E"], "RT-p51": ["D6K", "E40D", "Q174N", "K207N", "H221Y", "P272A", "A297E", "K311R", "D324E", "A360T", "V372I", "L377M", "D404E"], "RT-p66": ["E6K", "E40D", "Q174N", "K207N", "H221Y", "P272A", "A297E", "K311R", "D324E", "A360T", "V372I", "L377M", "D404E", "G490E", "Q524E"], "gp120": ["D4G", "N5S", "K18R", "D19E", "N52D", "P57R", "N66T", "N102K", "D105N", "-109N", "-111A", "-112M", "-113N", "-114E", "M126L", "I133V", "I137T", "R138T", "K140R", "Y145H", "I153V", "N158E", "N161S", "D202E", "K203T", "N204D", "N206S", "S215T", "G240R", "M243V", "I244L", "D251N", "A253N", "E262N", "E265K", "S278G", "K307G", "K316E", "K319Q", "E323K", "N335E", "L341V", "S365G", "N369-", "-373N", "-374G", "-375N", "-376G", "-377K", "N378G", "T380L", "-382G", "N383S", "-384N", "R401G", "R416E", "N435Q", "T443I"], "gp41": ["V7M", "L9V", "A14T", "S42G", "H53Q", "K56R", "V69I", "N96R", "S101D", "Y108F", "E110Y", "D113K", "E119Q", "E121D", "I124V", "D148E", "A151E", "N212S", "Q213R", "R214Q", "G220E", "D247E", "E272G", "A310V", "Q323R", "A325I", "I329F", "H331N", "L340A"], "nef": ["S8R", "S9R", "P24S", "E38D", "H40Y", "T48I", "A49G", "A56T", "E64A", "L76I", "G83A", "F121C", "R151K", "C163S", "R178G", "R192K", "E201D"], "p1": ["S8P"], "p17": ["A15K", "K28R", "E42D", "A54S", "I61L", "Q63K", "L75I", "Y86W", "V94I", "I107V", "N109K", "S111G", "S125N"], "p2": ["V7A", "T8Q", "N9-", "-10S", "-11A", "-12N", "I13V"], "p24": ["V11I", "L83V", "T210S", "G225S"], "p6": ["S3N", "P5T", "K31R", "E34G", "S40A"], "p7": ["K41Q"], "pro": ["Q18H", "K43R", "E60D", "V77I"], "rev": ["S8N", "E10V", "R17K", "E32S", "S56G", "R66G", "P67L", "H82R", "N91D", "P100S"], "tat": ["V36L", "L39S", "H60Y", "T77A", "R78V", "E85K"], "vif": ["Y30H", "V31I", "R37G", "R50K", "S52N", "A152T", "P156S", "R158K", "G182D"], "vpr": ["N48D", "E55V"], "vpu": ["F16I", "I18-", "V20I", "Y30C", "L33V", "K37R", "Q66K", "N80D"]}, "labels": {"aa": "INT: L45I, N134G, D256E; RT-p51: D6K, E40D, Q174N, K207N, H221Y, P272A, A297E, K311R, D324E, A360T, V372I, L377M, D404E; RT-p66: E6K, E40D, Q174N, K207N, H221Y, P272A, A297E, K311R, D324E, A360T, V372I, L377M, D404E, G490E, Q524E; gp120: D4G, N5S, K18R, D19E, N52D, P57R, N66T, N102K, D105N, -109N, -111A, -112M, -113N, -114E, M126L, I133V, I137T, R138T, K140R, Y145H, I153V, N158E, N161S, D202E, K203T, N204D, N206S, S215T, G240R, M243V, I244L, D251N, A253N, E262N, E265K, S278G, K307G, K316E, K319Q, E323K, N335E, L341V, S365G, N369-, -373N, -374G, -375N, -376G, -377K, N378G, T380L, -382G, N383S, -384N, R401G, R416E, N435Q, T443I; gp41: V7M, L9V, A14T, S42G, H53Q, K56R, V69I, N96R, S101D, Y108F, E110Y, D113K, E119Q, E121D, I124V, D148E, A151E, N212S, Q213R, R214Q, G220E, D247E, E272G, A310V, Q323R, A325I, I329F, H331N, L340A; nef: S8R, S9R, P24S, E38D, H40Y, T48I, A49G, A56T, E64A, L76I, G83A, F121C, R151K, C163S, R178G, R192K, E201D; p1: S8P; p17: A15K, K28R, E42D, A54S, I61L, Q63K, L75I, Y86W, V94I, I107V, N109K, S111G, S125N; p2: V7A, T8Q, N9-, -10S, -11A, -12N, I13V; p24: V11I, L83V, T210S, G225S; p6: S3N, P5T, K31R, E34G, S40A; p7: K41Q; pro: Q18H, K43R, E60D, V77I; rev: S8N, E10V, R17K, E32S, S56G, R66G, P67L, H82R, N91D, P100S; tat: V36L, L39S, H60Y, T77A, R78V, E85K; vif: Y30H, V31I, R37G, R50K, S52N, A152T, P156S, R158K, G182D; vpr: N48D, E55V; vpu: F16I, I18-, V20I, Y30C, L33V, K37R, Q66K, N80D"}}}, {"name": "CRF11_cpx_NODE_0000002", "node_attrs": {"div": 0.10034, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "C467T", "T596C", "C657A", "T788C", "G810A", "A818C", "A989T", "G1139A", "G1350C", "C1616T", "T1676C", "G1819A", "A1903T", "C2536T", "A2734G", "A3058C", "G3151A", "A3442G", "A3622G", "A3676G", "G3925A", "G4175A", "G4549A", "T4701A", "A4877G", "T4976C", "G5427A", "C5478T", "T5482A", "G5558A", "G5561A", "T5600A", "C5627T", "A5629G", "C5869A", "T5917C", "T5944G", "T6024C", "A6040G", "-6204G", "-6206A", "-6207G", "-6211T", "-6213T", "-6214G", "-6217A", "-6218G", "-6220C", "-6221C", "-6223A", "-6225C", "A6333G", "G6464A", "C6563T", "T6640G", "C6641T", "A6684G", "A6767G", "T6828-", "-6956A", "-6957A", "-6964C", "A6989G", "-6998T", "-6999C", "C7127A", "G7324A", "T7801G", "A8055G", "C8092A", "A8120C", "C8121T", "G8130A", "G8143A", "A8144G", "C8145G", "G8168T", "C8169T", "A8170G", "C8171A", "G8173A", "C8182T", "A8185G", "G8191A", "G8194A", "A8196T", "A8204G", "A8207T", "G8208C", "C8221T", "A8241G", "A8242G", "G8243T", "A8245G", "A8255G", "T8280G", "A8281T", "A8351C", "G8385C", "C8676T", "G8678A"], "gp120": ["N5K", "-117G", "N160S", "P263S", "K277R", "I305V", "F325Y", "-370S", "-371T", "-373S", "N379D", "-382S", "L425I"], "gp41": ["E110D", "N166K", "N251S", "F263L", "T273L", "T281G", "A289L", "N298I", "I301V", "E313G", "G314W", "I318V", "V326G"], "nef": ["E15Q"], "p17": ["Q108K"], "p24": ["V27I", "E29D", "G183N", "A207P"], "p6": ["S47N"], "pro": ["E35D"], "rev": ["A15T", "V16I", "I78L", "H82S", "N91T", "D99R", "T108D", "V109I", "P112S", "R113G", "E115K", "E116N"], "tat": ["S61N", "S62N"], "vpu": ["A7V", "S8G"]}, "labels": {"aa": "gp120: N5K, -117G, N160S, P263S, K277R, I305V, F325Y, -370S, -371T, -373S, N379D, -382S, L425I; gp41: E110D, N166K, N251S, F263L, T273L, T281G, A289L, N298I, I301V, E313G, G314W, I318V, V326G; nef: E15Q; p17: Q108K; p24: V27I, E29D, G183N, A207P; p6: S47N; pro: E35D; rev: A15T, V16I, I78L, H82S, N91T, D99R, T108D, V109I, P112S, R113G, E115K, E116N; tat: S61N, S62N; vpu: A7V, S8G"}}, "children": [{"name": "AY371151", "node_attrs": {"div": 0.13349, "accession": "AY371151", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CM_2190SA"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T434C", "G495T", "C558A", "A576G", "G629A", "C672A", "G693A", "G709A", "A714C", "G770A", "A776G", "G870T", "C897T", "G899A", "A965T", "A995C", "T1042C", "C1103T", "T1115C", "C1295T", "T1406G", "C1535T", "T1574C", "T1741C", "A1762C", "C1767A", "A1770G", "G1775A", "T1796C", "C1825A", "C1826A", "C1831A", "C1833A", "G1901A", "A1934T", "G1968A", "T1978G", "T2035C", "G2074A", "T2095C", "C2211T", "A2212G", "G2422A", "T2434C", "A2491C", "T2499C", "G2509A", "A2515G", "A2563G", "C2615A", "A2627C", "G2686A", "G2727A", "A2743C", "A2919G", "G2921A", "C2960T", "A2962G", "A2974G", "C2976A", "A3043G", "A3046G", "C3055T", "C3067T", "G3080A", "T3096A", "A3124G", "T3139C", "A3196G", "G3208A", "G3209A", "T3210C", "C3224A", "T3225C", "G3226A", "G3236A", "A3258G", "T3262C", "C3307A", "A3388G", "A3403G", "A3451G", "A3456G", "A3514T", "T3550C", "T3652C", "A3674C", "T3742C", "T3755A", "C3756A", "G3766A", "G3769A", "A3808T", "G3825C", "A3866G", "A3890T", "G3907A", "A3910G", "T3962C", "A3973T", "A4003G", "T4024C", "T4198C", "A4255G", "C4428T", "T4450C", "A4555G", "T4674C", "A4774C", "T4827A", "A4860G", "C4889G", "A4904G", "A4950G", "C5019T", "A5061C", "A5065G", "G5099A", "G5140A", "A5151G", "A5155G", "T5197C", "G5215A", "A5246C", "G5257A", "G5382T", "T5430C", "C5445T", "T5467A", "A5471T", "T5483A", "T5491G", "A5576C", "A5581C", "C5602T", "-5603T", "C5614A", "C5663T", "G5668A", "T5684C", "T5688G", "G5706T", "A5717G", "A5721G", "T5727A", "C5763T", "T5778C", "A5781T", "-5791G", "-5792A", "-5793G", "-5797T", "-5799G", "G5803C", "T5836G", "A5918G", "T5941C", "A5962G", "G6029A", "G6035A", "A6044G", "A6066G", "A6076C", "G6079A", "T6100C", "C6165T", "T6166G", "-6175T", "-6180G", "-6181C", "-6186A", "-6205T", "-6208C", "-6209T", "-6210C", "-6212A", "-6216A", "-6219G", "G6267A", "A6268G", "A6273G", "A6276T", "G6277A", "A6279G", "G6292T", "A6324G", "G6336A", "G6339A", "C6370T", "A6415C", "G6442A", "A6462T", "G6463T", "T6468A", "C6545T", "G6575A", "G6611A", "A6638C", "A6648C", "C6673T", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6772C", "G6774A", "A6776G", "G6779C", "A6788G", "A6789G", "A6791G", "G6802A", "A6814G", "A6823C", "A6825T", "A6826C", "T6829-", "A6855C", "T6860C", "C6861A", "T6875G", "A6900T", "T6928G", "T6943C", "-6958T", "A6959G", "-6961A", "-6963A", "-6966G", "T6967C", "-6968A", "-6969C", "-6972C", "-6973A", "-6983T", "-6984C", "-6994G", "-6997G", "C7020A", "G7026A", "A7027T", "G7040A", "A7043C", "G7044A", "A7106G", "A7149C", "T7150A", "T7159A", "G7160C", "G7162A", "C7164A", "-7165T", "G7232A", "A7246C", "A7279G", "G7441T", "T7462A", "G7502A", "A7533G", "C7561A", "A7589T", "A7590C", "T7625C", "T7627G", "T7633C", "T7636C", "A7641G", "C7684T", "C7762T", "A7782G", "G7835A", "G7883A", "A7918G", "T7921C", "A7943C", "A8032T", "T8067G", "C8071T", "C8155T", "A8172T", "G8180A", "T8239G", "A8264T", "G8274T", "C8311T", "C8320T", "A8323C", "A8364C", "T8366C", "G8373A", "G8387A", "T8456A", "-8488T", "-8490C", "-8491A", "-8492A", "T8501G", "C8507T", "T8515C", "G8516A", "T8568C", "G8604A", "T8646C", "A8652C", "G8666T", "T8687C", "A8696G", "T8703C", "A8718G", "A8719G"], "INT": ["E11D", "S17T", "I31V", "S39C", "M50I", "T218I"], "RT-p51": ["D6E", "T39M", "I135T", "Q174K", "I178L", "R211K", "K275R", "V276I", "P294Q", "V329I", "L334Q", "V372T", "L377T", "V381I", "K388R", "D404E"], "RT-p66": ["T39M", "I135T", "Q174K", "I178L", "R211K", "K275R", "V276I", "P294Q", "V329I", "L334Q", "V372T", "L377T", "V381I", "K388R", "D404E", "K454R", "K527Q", "S554N"], "gp120": ["T22A", "E59K", "V61I", "N64D", "N71S", "E74D", "T104M", "-109G", "-111N", "-112S", "-113S", "-114S", "-115M", "-116E", "-118Q", "-119A", "-120E", "-121M", "E125-", "M126-", "R138K", "K140R", "K141I", "K142R", "N157S", "S162A", "K203I", "F205Y", "E241K", "A253T", "E262Q", "E265T", "S278G", "T308A", "E309Q", "N312G", "T313A", "E323D", "-324I", "N334T", "S336H", "L341V", "N349I", "N358K", "W372T", "-384D", "P389Q", "R391N", "V396I", "R397H", "R418E", "N432T", "-433N", "N435T", "T436Q", "V460I", "K464N"], "gp41": ["K46N", "H53Q", "A67T", "K77R", "N96S", "Y108Q", "D113G", "E119Q", "N160S", "V178I", "V194I", "R214Q", "F255C", "Q290I", "G293S", "I321L", "R324I", "A325V", "L340F"], "nef": ["S8R", "V11I", "A49V", "-50Q", "-51T", "D53E", "L58P", "G88S", "Y102H", "R104Q", "E108D", "F121L", "N126G"], "p17": ["A54S", "L75I", "T81A", "Q113K", "A120T", "S125N", "K127Q"], "p24": ["I15M", "A47S", "L83V", "I104T"], "p6": ["I21T", "Q28P", "P30T", "K31G", "P49Q", "S51*", "Q52K"], "pro": ["L10I", "T12K", "D35N", "M46L", "R57K"], "rev": ["I21L", "E32T", "T62S", "P103S", "C107F", "G111E"], "tat": ["E2D", "C31S", "Y32F", "V36N", "L39V", "D67A", "I69L", "R78N"], "vif": ["Y30H", "L39M", "E63A", "L81M", "K92E", "K122E", "T159P", "K160R", "G185E", "M189V", "N190S"], "vpr": ["N16S", "N48H", "A93S"], "vpu": ["P3T", "A19V", "V21I", "V26A", "K37R", "D40E", "E58D", "W77G"]}, "labels": {"aa": "INT: E11D, S17T, I31V, S39C, M50I, T218I; RT-p51: D6E, T39M, I135T, Q174K, I178L, R211K, K275R, V276I, P294Q, V329I, L334Q, V372T, L377T, V381I, K388R, D404E; RT-p66: T39M, I135T, Q174K, I178L, R211K, K275R, V276I, P294Q, V329I, L334Q, V372T, L377T, V381I, K388R, D404E, K454R, K527Q, S554N; gp120: T22A, E59K, V61I, N64D, N71S, E74D, T104M, -109G, -111N, -112S, -113S, -114S, -115M, -116E, -118Q, -119A, -120E, -121M, E125-, M126-, R138K, K140R, K141I, K142R, N157S, S162A, K203I, F205Y, E241K, A253T, E262Q, E265T, S278G, T308A, E309Q, N312G, T313A, E323D, -324I, N334T, S336H, L341V, N349I, N358K, W372T, -384D, P389Q, R391N, V396I, R397H, R418E, N432T, -433N, N435T, T436Q, V460I, K464N; gp41: K46N, H53Q, A67T, K77R, N96S, Y108Q, D113G, E119Q, N160S, V178I, V194I, R214Q, F255C, Q290I, G293S, I321L, R324I, A325V, L340F; nef: S8R, V11I, A49V, -50Q, -51T, D53E, L58P, G88S, Y102H, R104Q, E108D, F121L, N126G; p17: A54S, L75I, T81A, Q113K, A120T, S125N, K127Q; p24: I15M, A47S, L83V, I104T; p6: I21T, Q28P, P30T, K31G, P49Q, S51*, Q52K; pro: L10I, T12K, D35N, M46L, R57K; rev: I21L, E32T, T62S, P103S, C107F, G111E; tat: E2D, C31S, Y32F, V36N, L39V, D67A, I69L, R78N; vif: Y30H, L39M, E63A, L81M, K92E, K122E, T159P, K160R, G185E, M189V, N190S; vpr: N16S, N48H, A93S; vpu: P3T, A19V, V21I, V26A, K37R, D40E, E58D, W77G"}}}, {"name": "KP109503", "node_attrs": {"div": 0.15567999999999999, "accession": "KP109503", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEURF11CM015"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A368G", "G407A", "G425A", "A431G", "C471G", "C476T", "A499G", "A500G", "A592T", "A654C", "A656G", "G686A", "G712A", "C767T", "A774T", "G791A", "T824G", "A836G", "T944G", "G977A", "G978C", "T992G", "A998G", "G1019A", "T1063C", "A1079T", "C1095A", "C1096A", "A1097C", "C1187T", "A1192G", "A1208G", "G1271T", "A1277G", "C1280T", "C1295A", "C1299A", "C1322T", "T1329A", "T1334C", "T1362C", "A1367G", "G1404A", "G1430A", "T1444C", "C1449A", "A1461G", "A1494-", "A1495-", "A1496-", "G1498A", "A1499G", "T1501G", "T1502A", "-1503A", "-1504T", "-1505T", "G1619A", "T1646C", "G1673A", "T1681C", "C1682A", "A1733G", "A1735C", "G1736C", "T1741G", "A1742G", "G1743A", "C1744G", "C1745A", "-1746T", "-1747A", "-1748G", "T1752C", "C1754T", "C1756A", "A1758G", "G1769A", "G1771C", "G1772A", "G1781A", "T1791A", "A1794G", "C1825T", "T1828A", "C1831T", "A1835G", "C1845G", "G1846A", "G1849A", "G1855A", "G1858A", "A1861G", "G1907A", "G1920A", "A1945G", "G1972A", "G1979C", "A1981G", "G1985C", "C1987T", "A1990T", "G1997T", "A1998G", "G1999T", "A2014C", "G2023A", "A2057C", "G2059A", "C2062T", "T2071C", "T2086A", "A2108G", "A2113C", "G2134T", "C2149G", "A2155G", "A2215C", "A2241G", "A2243G", "A2344G", "T2383C", "A2413G", "C2464T", "C2467T", "T2476C", "G2566A", "T2632C", "G2656A", "G2662A", "G2705A", "A2714G", "T2735C", "A2752G", "C2756T", "T2758C", "A2764G", "G2830A", "C2885T", "A2938G", "C2968A", "A3027G", "C3067A", "T3096C", "A3103G", "A3115G", "A3116G", "C3129A", "T3172C", "A3211C", "A3217G", "A3268G", "G3279A", "A3387C", "T3399C", "T3414A", "A3477G", "G3483A", "G3494A", "G3553A", "G3564A", "T3613C", "A3658C", "T3757A", "A3760G", "A3775G", "T3793C", "A3794C", "C3829T", "A3901G", "T3924C", "G4109A", "A4111G", "G4145A", "C4146G", "A4189T", "G4228A", "G4243A", "G4276T", "C4396T", "T4397A", "G4573A", "G4622A", "G4677A", "A4694C", "A4701G", "C4728A", "T4738C", "A4820C", "G4859A", "A4861G", "G4870A", "G4888A", "T4916C", "C4923A", "T4940C", "A4956C", "A5005G", "A5049C", "A5066C", "T5072G", "A5119G", "G5128A", "C5149T", "A5159G", "T5182C", "C5213A", "C5251A", "T5292C", "G5437C", "C5446A", "T5457C", "A5460G", "A5482G", "T5484A", "A5495G", "G5496T", "A5499G", "G5538A", "-5603C", "G5619A", "C5620A", "A5621C", "A5652C", "A5659C", "A5685G", "G5686T", "G5687A", "T5708A", "A5720G", "G5775A", "G5794-", "A5795-", "A5796-", "T5798-", "C5801A", "A5802G", "A5805G", "C5806T", "T5808G", "-5809G", "-5810C", "-5811A", "A5907G", "T5923C", "A5926C", "G5944A", "A5947G", "G5948T", "C5989T", "T6025G", "G6029-", "A6030-", "A6031-", "A6051C", "C6052T", "A6092G", "C6097T", "G6170-", "T6171-", "A6172-", "A6173-", "A6174-", "A6176-", "A6177-", "T6178-", "G6179-", "A6182-", "C6183-", "T6184-", "A6185-", "T6187-", "A6188-", "-6191C", "-6192A", "-6193T", "-6194A", "-6195A", "-6196T", "-6197A", "-6198G", "-6199C", "-6200A", "-6201C", "-6202T", "-6203G", "-6205A", "-6208A", "-6209A", "-6210A", "-6212G", "-6216G", "-6219A", "A6251G", "A6263G", "A6275C", "G6280A", 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"A8531T", "G8537T", "T8582C", "A8584T", "G8588A", "G8590C", "T8600C", "A8653G", "C8675T", "T8701A", "A8793G", "G8795T", "G8805A", "C8828A", "T8835C", "T8847A", "A8858C", "A8870G", "G8875A", "G8882A", "T8883C", "A8885G", "T8897C", "C8934A", "G8942A", "T8947A", "C8966T", "A8970G", "G8971C", "G8974T", "G8977A", "A8978C", "C8979A", "T8988-", "C9073T", "A9135G"], "INT": ["K7Q", "M50T", "V112M", "A124S", "E138D", "E167D", "L208I", "G283S"], "RT-p51": ["I5V", "K13N", "E40D", "K49R", "I50V", "E204K", "K207E", "F214L", "H221Y", "D291E", "K311R", "D324E", "L334P", "I341V", "P345Q", "R395K", "K431T", "I435T", "F440Y"], "RT-p66": ["I5V", "E6D", "K13N", "E40D", "K49R", "I50V", "E204K", "K207E", "F214L", "H221Y", "D291E", "K311R", "D324E", "L334P", "I341V", "P345Q", "R395K", "K431T", "I435T", "F440Y", "M452I", "K461R", "R463K", "V467I", "G490E"], "gp120": ["K18R", "A32S", "E59-", "N66T", "I80V", "V106H", "N108-", "T110-", "-115S", "-116T", "-118R", "-119N", "-120V", "-121G", "-122D", "-123Q", "-124A", "I133V", "I137V", "K141Q", "K143Q", "R150K", "I156L", "N157K", "N158D", "N161S", "V170I", "D202Q", "N206T", "K212T", "G240K", "D251N", "N272G", "I281V", "F289-", "Y290-", "A291-", "T292-", "G293-", "D294-", "H302Q", "K307S", "T308K", "E309A", "N311S", "N312K", "T313I", "Q315G", "K319Q", "Q320K", "R322K", "-324E", "-326N", "-327T", "N328T", "T330-", "N335S", "G351Q", "S365G", "N368K", "-374T", "-375W", "-376V", "-377K", "T380N", "K381S", "N383D", "-384E", "T385N", "Q412P", "K414E", "R416K", "T427V", "N432C", "-433R", "N435D", "T443A", "T471N", "K474R"], "gp41": ["I4L", "L8F", "L9F", "S23A", "I24M", "K46R", "D113E", "N114S", "M115N", "I124V", "S125G", "Q129N", "T133R", "N140I", "D163S", "S165T", "I187V", "L191F", "C197V", "I210A", "P211H", "N212Q", "G221E", "D230G", "T232D", "I270V", "R277Q", "Q290R", "L304F", "N305D", "A306T", "A310V", "V311I", "A343S"], "nef": ["I16V", "R22Q", "T23A", "P25T", "E28A", "A33V", "K35Q", "E38A", "T48L", "A49N", "C55K", "A56V", "E63D", "E65D", "Y81F", "G83A", "F120Y", "R151D", "E155K", "N162K", "C169S", "R178K", "L198M", "F202Y"], "p17": ["L46V", "E55G", "Y86F", "I107L", "S126N"], "p2": ["V7A", "T8Q", "-10T", "-11N", "-12V", "I13-"], "p24": ["I15L", "D71E", "H87Q", "M96I", "L111P", "P122N", "K154R", "E180D", "L190M", "S200T", "G225S"], "p6": ["L1P", "-26Q", "K27E", "K31T", "L38I", "T39A", "P49L", "L50*", "S51L"], "pro": ["I13V", "A16G", "D37N", "R41K", "E60D", "E61Q", "V63L", "E67C"], "rev": ["S8N", "Y28C", "K30P", "P31A", "N50R", "D53H", "I55L", "Q57E", "E68A", "E87A", "D88G", "I102V", "C107S", "D108E"], "tat": ["A21P", "Q24K", "K40S", "S75P", "Q76T", "T77S", "R79G", "E86K", "S87*"], "vif": ["V31I", "K36N", "L39V", "H48N", "I51T", "E78D", "K92R", "R95K", "G101D", "H113N", "I124L", "N140S", "T155P", "K160N", "Q178R", "R181K", "T188I"], "vpr": ["M19V", "P37T", "I63T"], "vpu": ["Q5T", "I18L", "G27Y", "L34Q", "K38R", "Q66K"]}, "labels": {"aa": "INT: K7Q, M50T, V112M, A124S, E138D, E167D, L208I, G283S; RT-p51: I5V, K13N, E40D, K49R, I50V, E204K, K207E, F214L, H221Y, D291E, K311R, D324E, L334P, I341V, P345Q, R395K, K431T, I435T, F440Y; RT-p66: I5V, E6D, K13N, E40D, K49R, I50V, E204K, K207E, F214L, H221Y, D291E, K311R, D324E, L334P, I341V, P345Q, R395K, K431T, I435T, F440Y, M452I, K461R, R463K, V467I, G490E; gp120: K18R, A32S, E59-, N66T, I80V, V106H, N108-, T110-, -115S, -116T, -118R, -119N, -120V, -121G, -122D, -123Q, -124A, I133V, I137V, K141Q, K143Q, R150K, I156L, N157K, N158D, N161S, V170I, D202Q, N206T, K212T, G240K, D251N, N272G, I281V, F289-, Y290-, A291-, T292-, G293-, D294-, H302Q, K307S, T308K, E309A, N311S, N312K, T313I, Q315G, K319Q, Q320K, R322K, -324E, -326N, -327T, N328T, T330-, N335S, G351Q, S365G, N368K, -374T, -375W, -376V, -377K, T380N, K381S, N383D, -384E, T385N, Q412P, K414E, R416K, T427V, N432C, -433R, N435D, T443A, T471N, K474R; gp41: I4L, L8F, L9F, S23A, I24M, K46R, D113E, N114S, M115N, I124V, S125G, Q129N, T133R, N140I, D163S, S165T, I187V, L191F, C197V, I210A, P211H, N212Q, G221E, D230G, T232D, I270V, R277Q, Q290R, L304F, N305D, A306T, A310V, V311I, A343S; nef: I16V, R22Q, T23A, P25T, E28A, A33V, K35Q, E38A, T48L, A49N, C55K, A56V, E63D, E65D, Y81F, G83A, F120Y, R151D, E155K, N162K, C169S, R178K, L198M, F202Y; p17: L46V, E55G, Y86F, I107L, S126N; p2: V7A, T8Q, -10T, -11N, -12V, I13-; p24: I15L, D71E, H87Q, M96I, L111P, P122N, K154R, E180D, L190M, S200T, G225S; p6: L1P, -26Q, K27E, K31T, L38I, T39A, P49L, L50*, S51L; pro: I13V, A16G, D37N, R41K, E60D, E61Q, V63L, E67C; rev: S8N, Y28C, K30P, P31A, N50R, D53H, I55L, Q57E, E68A, E87A, D88G, I102V, C107S, D108E; tat: A21P, Q24K, K40S, S75P, Q76T, T77S, R79G, E86K, S87*; vif: V31I, K36N, L39V, H48N, I51T, E78D, K92R, R95K, G101D, H113N, I124L, N140S, T155P, K160N, Q178R, R181K, T188I; vpr: M19V, P37T, I63T; vpu: Q5T, I18L, G27Y, L34Q, K38R, Q66K"}}}]}]}, {"name": "CRF11_cpx_NODE_0000003", "node_attrs": {"div": 0.07991999999999999, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A518G", "T734C", "T1978G", "T2206C", "T2776C", "A5293T", "-6175G", "T6582G", "C6797A", "C8296T", "T8456A"], "gp120": ["N204E"], "gp41": ["S101V", "N239S"], "p17": ["I61M"]}, "labels": {"aa": "gp120: N204E; gp41: S101V, N239S; p17: I61M"}}, "children": [{"name": "CRF11_cpx_NODE_0000004", "node_attrs": {"div": 0.08747999999999999, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G365C", "G378A", "T596C", "A606C", "G770A", "G803A", "T1325C", "G1350A", "A1740G", "G1760A", "G1858A", "G2566A", "C2575T", "A2846T", "C2848T", "G2872A", "C3067T", "G3127A", "A3238G", "C4144T", "G4727A", "A4737G", "G4773A", "C4786T", "G4887A", "T4910C", "A5061G", "T5203C", "C5391T", "T5482C", "A5545C", "G5706A", "G5712A", "G5718A", "T5727C", "A5760G", "A5802G", "A5805G", "T5808G", "-5809G", "A5845G", "G6128A", "C6134T", "-6206A", "-6207G", "-6208C", "-6209A", "-6211T", "-6212G", "-6218G", "G6303A", "C6511T", "T6599A", "A6635G", "-6686A", "-6687G", "-6688T", "-6689A", "-6690T", 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F120Y; p24: A207T; p6: P23-, S24P, P25S; rev: E10D, T62S, E68A, I78L; tat: T57P, T77A; vif: I51V, E63T, T67I, G101S; vpr: P96S; vpu: N80D"}}, "children": [{"name": "KP718929", "node_attrs": {"div": 0.14484999999999998, "accession": "KP718929", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2008.0}, "Strain_name": {"value": "1252_11"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A215G", "G216A", "T227A", "T228G", "T232C", "G256A", "-304A", "-305A", "A330G", "A371C", "T422C", "G428A", "C435T", "G495C", "A503T", "A520G", "A524G", "T560A", "A571T", "A599G", "A601T", "C603A", "A620G", "A645G", "A647G", "G665A", "A737T", "T788C", "G920A", "A978T", "C1013T", "T1064C", "A1115T", "A1116C", "G1139A", "A1142G", "T1143C", "A1188G", "C1214T", "C1243T", "G1271A", "A1278G", "A1279G", "G1302A", "C1304T", "G1313A", "A1327G", "T1385C", "G1405C", "G1418A", "T1444C", "C1446A", "A1447C", "T1451A", "C1453A", "A1454C", "A1456T", 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"RT-p51": ["D6E", "I135T", "V202I", "K207Q", "R211K", "Q245K", "D248E", "R307K", "A360T", "V372A", "E413D", "V417I"], "RT-p66": ["I135T", "V202I", "K207Q", "R211K", "Q245K", "D248E", "R307K", "A360T", "V372A", "E413D", "V417I", "V458I", "H483Y", "L517I", "S519N", "K527N", "K530R"], "gp120": ["A2V", "D4G", "N5K", "P57V", "N64K", "H77Y", "-109S", "T110S", "-111A", "-112T", "-113A", "-114R", "-115G", "-116S", "R138K", "L147I", "N159S", "T172A", "K212H", "G240E", "D251N", "P263T", "Y290F", "K307R", "T308A", "E309K", "Q315Y", "-324S", "-326S", "-327N", "N328-", "N334A", "S336H", "I343V", "K361I", "S365N", "T366I", "W367R", "-368F", "-370G", "-371T", "-372T", "-373W", "-374E", "-375N", "-376G", "N379T", "N383-", "T385-", "V396I", "R397N", "K414R", "N418V", "N420D", "L425V", "N432V", "N435T", "R472N"], "gp41": ["I4M", "A14T", "A30V", "E49D", "L81F", "V101N", "D125E", "Q129H", "N195R", "C197V", "Q213P", "E215G", "G220E", "R231K", "T232D", "I235V", "N251S", "H258R", "R259H", "I270T", "T273L", "R276H", "R277S", "E280G", "T281A", "I321L", "Q323R", "A325V", "I329L"], "nef": ["E15D", "I20M", "P25A", "K35R", "K39R", "-50L", "A54D", "E62T", "G88S", "K104Q", "E108D", "C138T", "R151E", "E155K", "N157T", "I168M", "C169N", "D174E", "E176T", "E177D", "M182R", "S188G", "L198K", "F202Y"], "p17": ["K12N", "A15T", "A54P", "E62G", "Y79F", "H89L", "Q90K", "I104V"], "p2": ["V7A", "N9Q", "-10N", "-11I", "-12N"], "p24": ["E128D", "I129L", "I153V", "T171I", "V191I", "K199R", "G225A"], "p6": ["I21A", "-26L", "P30T", "L38S", "S43L", "S47N"], "p7": ["G4S", "K10R", "R11K"], "pro": ["I36M", "V63T", "V77I", "M89L"], "rev": ["T14L", "Y28H", "S34A", "N50R", "D53R", "S54E", "Q57E", "L83I", "D84N", "N91T", "D99S", "P103S", "R113G"], "tat": ["E2D", "V4I", "Q13H", "Q17R", "Q35S", "V36L", "S59P", "H60F", "L74S", "R79G", "K80G", "E85K"], "vif": ["H27Y", "G60E", "A62D", "T63S", "V66I", "I67V", "E78D", "Q83H", "L91Q", "L102M", "M109L", "E117D", "H127Y", "T159A", "K160R", "K176N", "R184K", "T188I", "C192H"], "vpr": ["A4P", "M19A", "G41E", "E58G", "I63V", "Q77H", "A93P", "S94N"], "vpu": ["I2Q", "Q5E", "A15T", "I17V", "G27I", "L33I", "K38E", "L42I", "I43L", "D44N", "T61A", "Q66K"]}, "labels": {"aa": "INT: I101L, Q136K, L208I, K211R, Y227F, S255N, D256E; RT-p51: D6E, I135T, V202I, K207Q, R211K, Q245K, D248E, R307K, A360T, V372A, E413D, V417I; RT-p66: I135T, V202I, K207Q, R211K, Q245K, D248E, R307K, A360T, V372A, E413D, V417I, V458I, H483Y, L517I, S519N, K527N, K530R; gp120: A2V, D4G, N5K, P57V, N64K, H77Y, -109S, T110S, -111A, -112T, -113A, -114R, -115G, -116S, R138K, L147I, N159S, T172A, K212H, G240E, D251N, P263T, Y290F, K307R, T308A, E309K, Q315Y, -324S, -326S, -327N, N328-, N334A, S336H, I343V, K361I, S365N, T366I, W367R, -368F, -370G, -371T, -372T, -373W, -374E, -375N, -376G, N379T, N383-, T385-, V396I, R397N, K414R, N418V, N420D, L425V, N432V, N435T, R472N; gp41: I4M, A14T, A30V, E49D, L81F, V101N, D125E, Q129H, N195R, C197V, Q213P, E215G, G220E, R231K, T232D, I235V, N251S, H258R, R259H, I270T, T273L, R276H, R277S, E280G, T281A, I321L, Q323R, A325V, I329L; nef: E15D, I20M, P25A, K35R, K39R, -50L, A54D, E62T, G88S, K104Q, E108D, C138T, R151E, E155K, N157T, I168M, C169N, D174E, E176T, E177D, M182R, S188G, L198K, F202Y; p17: K12N, A15T, A54P, E62G, Y79F, H89L, Q90K, I104V; p2: V7A, N9Q, -10N, -11I, -12N; p24: E128D, I129L, I153V, T171I, V191I, K199R, G225A; p6: I21A, -26L, P30T, L38S, S43L, S47N; p7: G4S, K10R, R11K; pro: I36M, V63T, V77I, M89L; rev: T14L, Y28H, S34A, N50R, D53R, S54E, Q57E, L83I, D84N, N91T, D99S, P103S, R113G; tat: E2D, V4I, Q13H, Q17R, Q35S, V36L, S59P, H60F, L74S, R79G, K80G, E85K; vif: H27Y, G60E, A62D, T63S, V66I, I67V, E78D, Q83H, L91Q, L102M, M109L, E117D, H127Y, T159A, K160R, K176N, R184K, T188I, C192H; vpr: A4P, M19A, G41E, E58G, I63V, Q77H, A93P, S94N; vpu: I2Q, Q5E, A15T, I17V, G27I, L33I, K38E, L42I, I43L, D44N, T61A, Q66K"}}}, {"name": "AF492624", "node_attrs": {"div": 0.12415999999999999, "accession": "AF492624", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 1995.0}, "Strain_name": {"value": "95CM_1816"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A168T", "T200C", "T201C", "A263G", "A303T", "G317A", "C379A", "A412G", "G413A", "A417C", "A520T", "T525A", "G540A", "G541A", "G542T", "A562G", "T572C", "A605G", "G607A", "A619G", "G762A", "A774C", "G810A", "A860G", "G956A", "A980G", "T992G", "A1017C", "C1040T", "T1063C", "C1187T", "A1192G", "C1211T", "C1220T", "C1235T", "T1238C", "A1242T", "C1243G", "A1278C", "C1280A", "C1294G", "A1307G", "G1328A", "C1331T", "G1394A", "T1451G", "G1472A", "C1511T", "T1574C", "A1607G", "C1756A", "G1775-", "A1776-", "A1777-", "A1794G", "C1826A", "T1828C", "A1835G", "G1846A", "A1857G", "G1907A", "G1912A", "G1920A", "A1985C", "G1999A", "T2041C", "T2080A", "A2108G", "A2113C", "A2155G", "T2257C", "C2281T", "A2389G", "T2597C", "G2686A", "T2758C", "A2815T", "C2828G", "G2921A", "A2925G", "C2960T", "A2995G", "G3010A", "A3037C", "C3056T", "G3065A", "A3066G", "G3085A", "G3151A", "A3196G", "G3209A", "C3224A", "T3225C", "C3346T", "A3367G", "A3388G", "A3449G", "A3477G", "G3484A", "T3566C", "A3583T", "T3755C", "C3756A", "C3763T", "A3768G", "G3772A", "G3787A", "T3820C", "T3853C", "A3874G", "C3892T", "C3908T", "G3925T", "A3973C", "A3989G", "A3991G", "G3997A", "G4148A", "C4149T", "T4198C", "G4228A", "T4234A", "G4252A", "A4255G", "G4264A", "A4376G", "A4378G", "C4426T", "T4441A", "A4475C", "G4549A", "G4553A", "C4650A", "G4677A", "G4689A", "A4694C", "T4701A", "T4702G", "G4767C", "A4768C", "A4774C", "A4781G", "A4814G", "G4835A", "C4914T", "T4932A", "T4976A", "A4993C", "T5027C", "G5059A", "G5060A", "C5062T", "G5086A", "G5140A", "G5143A", "A5164G", "G5179A", "T5197C", "T5263A", "A5268T", "T5294C", "G5359C", "A5375G", "C5412T", "T5424C", "T5466C", "T5483A", "C5487T", "T5491C", "C5514A", "G5538A", "C5551T", "C5579A", "A5601T", "C5614T", "G5619A", "G5635A", "T5655C", "C5663T", "T5688G", "A5689C", "C5704T", "A5717G", 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"RT-p66": ["I5V", "E6D", "Q245E", "V276I", "K277R", "P321S", "D324S", "V372I", "L377T", "I452V", "K461R", "S554H", "K558R"], "gp120": ["K18R", "T23P", "D29N", "P57H", "K69E", "D105N", "-109C", "-111N", "-112V", "-122E", "-123K", "-124N", "K141Q", "K143Q", "I153V", "I156L", "N159D", "N161T", "F195Y", "E204K", "K212T", "K224R", "E247K", "L260F", "E262S", "E265H", "H280R", "D294A", "N304V", "S306N", "K307A", "E309I", "Q315K", "K316R", "A318V", "K319E", "E323Q", "-324I", "F325E", "-326I", "-327F", "N335S", "I343T", "-368N", "N369-", "N379G", "E381V", "-382G", "-384S", "P389S", "R391K", "R416M", "N420T", "N432K", "N434S", "N435S", "T436K", "N437T", "T443I"], "gp41": ["V72I", "D125N", "N160T", "S165T", "L204V", "Q213H", "R214K", "P216A", "R218S", "F255Y", "F263L", "A267V", "A268T", "V271L", "E272G", "A289T", "G293S", "A306T", "A310V", "I321V", "A322I", "Q323H", "I329V"], "nef": ["S9R", "P24S", "E28P", "I43V", "-50E", "E158A", "I168L", "C169S", "M173T", "E201D"], "p17": ["A15K", "K26R", "K28Q", "E62V", "L64I", "G69N", "K76R", "R91Q", "K95R"], "p24": ["V11I", "I15L", "V27I", "L83M", "H87Q", "M96L", "L111P", "K154R", "T171C", "G183Q", "T188S"], "p6": ["I21V", "-26Q", "K33-", "T39A", "L50S"], "pro": ["L10I", "I13V", "K20R", "D37N", "R41K", "V63L"], "rev": ["S8N", "L22I", "E32Q", "A37S", "H82N", "S86N", "C89S", "C107Y", "G111E"], "tat": ["R29K", "V36H", "P68H", "R78T", "G83V"], "vif": ["H22N", "V31I", "A35T", "K36N", "L39R", "D61P", "H110Y", "S116T", "S130R", "Q136P", "R158K", "T159V", "R167K", "G185E", "S186N", "*193W"], "vpr": ["E55V", "R85P"], "vpu": ["P3S", "V10I", "A19V", "I28L", "K37R"]}, "labels": {"aa": "INT: M50I, I72V, A125I, I201V, N222K, I234L, V260I; RT-p51: I5V, Q245E, V276I, K277R, P321S, D324S, V372I, L377T; RT-p66: I5V, E6D, Q245E, V276I, K277R, P321S, D324S, V372I, L377T, I452V, K461R, S554H, K558R; gp120: K18R, T23P, D29N, P57H, K69E, D105N, -109C, -111N, -112V, -122E, -123K, -124N, K141Q, K143Q, I153V, I156L, N159D, N161T, F195Y, E204K, K212T, K224R, E247K, L260F, E262S, E265H, H280R, D294A, N304V, S306N, K307A, E309I, Q315K, K316R, A318V, K319E, E323Q, -324I, F325E, -326I, -327F, N335S, I343T, -368N, N369-, N379G, E381V, -382G, -384S, P389S, R391K, R416M, N420T, N432K, N434S, N435S, T436K, N437T, T443I; gp41: V72I, D125N, N160T, S165T, L204V, Q213H, R214K, P216A, R218S, F255Y, F263L, A267V, A268T, V271L, E272G, A289T, G293S, A306T, A310V, I321V, A322I, Q323H, I329V; nef: S9R, P24S, E28P, I43V, -50E, E158A, I168L, C169S, M173T, E201D; p17: A15K, K26R, K28Q, E62V, L64I, G69N, K76R, R91Q, K95R; p24: V11I, I15L, V27I, L83M, H87Q, M96L, L111P, K154R, T171C, G183Q, T188S; p6: I21V, -26Q, K33-, T39A, L50S; pro: L10I, I13V, K20R, D37N, R41K, V63L; rev: S8N, L22I, E32Q, A37S, H82N, S86N, C89S, C107Y, G111E; tat: R29K, V36H, P68H, R78T, G83V; vif: H22N, V31I, A35T, K36N, L39R, D61P, H110Y, S116T, S130R, Q136P, R158K, T159V, R167K, G185E, S186N, *193W; vpr: E55V, R85P; vpu: P3S, V10I, A19V, I28L, K37R"}}}]}, {"name": "CRF11_cpx_NODE_0000005", "node_attrs": {"div": 0.08417999999999999, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A50G", "A605C", "G712A", "C1235T", "T1385C", "G1476A", "A1841G", "A2002G", "T2080C", "A2113C", "G2463A", "A3103G", "T3139C", "T3221G", "G3222C", "T3252C", "C3328T", "A3388G", "A3643G", "G3907A", "A4376G", "A5094G", "T5483A", "C5707T", "G5803C", "C6385T", "A6639G", "A6767G", "G6774A", "T6787C", "A6800C", "G6821A", "A6826G", "-6996A", "A7094G", "A7106G", "A7155C", "C7158A", "C7603T", "C8047T", "C8080A", "C8103T", "C8146T", "A8469G", "A8558G", "A8794G"], "INT": ["I201V"], "RT-p51": ["S123N", "C376A", "I386T"], "RT-p66": ["E6D", "C376A", "I386T"], "gp120": ["N160S", "E262S", "E265K", "I305V", "K316Q", "E323-", "-324K", "K414E", "N418D"], "gp41": ["P216A", "A267V", "T281I"], "p17": ["S126N"], "p7": ["G4S"], "pro": ["I15V"], "rev": ["E32K", "P67S", "P100S"], "tat": ["V36Y"], "vif": ["T170A"], "vpu": ["V13I"]}, "labels": {"aa": "INT: I201V; RT-p51: S123N, C376A, I386T; RT-p66: E6D, C376A, I386T; gp120: N160S, E262S, E265K, I305V, K316Q, E323-, -324K, K414E, N418D; gp41: P216A, A267V, T281I; p17: S126N; p7: G4S; pro: I15V; rev: E32K, P67S, P100S; tat: V36Y; vif: T170A; vpu: V13I"}}, "children": [{"name": "CRF11_cpx_NODE_0000006", "node_attrs": {"div": 0.09011, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A214G", "G378C", "C379A", "C426A", "G615A", "G1101A", "A1241G", "A1242G", "T1325C", "T1421C", "G1972A", "G2027A", "G2698A", "C2779T", "C2828G", "C2848T", "G2926A", "A3200G", "T3225A", "G3651A", "G4735A", "T5147C", "G5170A", "T5684C", "G5687T", "G5729A", "C6023G", "G6133A", "-6208A", "-6209A", "-6219A", "-6220G", "A6333G", "C6347T", "C6411T", "A6684G", "-6686A", "-6687G", "-6688T", "-6689A", "-6690T", "-6691A", "A6734G", "G6779A", "A6798G", "-6833A", "-6835C", "A6840C", "C6859A", "-6957A", "-6958A", "-6984C", "-6994T", "-6995G", "-6998A", "G7044A", "-7165T", "G7309T", "G7324A", "G7441A", "T7462A", "A7944G", "C8223T", "T8257A", "T8279G", "T8390A", "C8406A", "G8424A", "C8477T", "C8503A", "C8775T", "T8829A"], "RT-p51": ["Q245E", "T369A", "L377Q"], "RT-p66": ["Q245E", "T369A", "L377Q", "S519N"], "gp120": ["P57V", "N161S", "P186L", "K277R", "E309K", "Q315R"], "gp41": ["H53Q", "E119Q", "L326V"], "nef": ["A54D", "C163S"], "p17": ["A15Q", "L31M", "V94I"], "p24": ["V124I", "E187D"], "p6": ["P23-", "S24P", "P25S"], "pro": ["V77I"], "tat": ["S59P", "R79G"], "vif": ["R50K"], "vpr": ["Y15H"], "vpu": ["R41K"]}, "labels": {"aa": "RT-p51: Q245E, T369A, L377Q; RT-p66: Q245E, T369A, L377Q, S519N; gp120: P57V, N161S, P186L, K277R, E309K, Q315R; gp41: H53Q, E119Q, L326V; nef: A54D, C163S; p17: A15Q, L31M, V94I; p24: V124I, E187D; p6: P23-, S24P, P25S; pro: V77I; tat: S59P, R79G; vif: R50K; vpr: Y15H; vpu: R41K"}}, "children": [{"name": "KP718935", "node_attrs": {"div": 0.13552, "accession": "KP718935", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "A1774"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C96T", "A133T", "C161A", "T200C", "T201C", "A301C", "A302T", "A303T", "A386G", "A417C", "C435T", "G452A", "C471G", "A480G", "G518A", "A548G", "A557G", "C558A", "A566C", "T570C", "A585G", "C586T", "A604G", "G608A", "G614T", "G632A", "T662G", "G709A", "A715C", "G716A", "C767T", "T788A", "C827T", "T979C", "G987C", "A989C", "T992G", "A1002C", "T1004C", "A1007G", "G1019T", "A1022G", "A1035G", "G1078C", "A1115T", "A1192G", "G1256A", "A1263T", "G1271T", "A1278G", "A1279G", "A1292C", "C1322T", "G1328A", "T1329A", "C1330G", "T1335C", "G1350A", "C1385T", "C1610A", "G1657A", "G1691A", "C1730T", "C1756T", "A1771G", "T1791G", "A1794T", "T1797G", "G1819A", "C1831T", "G1841A", "A1857G", "T1864C", "A1918G", "A1985G", "C2047T", "G2065A", "T2071A", "G2074A", "A2075C", "T2095C", "A2108G", "T2158C", "A2210G", "T2237A", "T2245A", "A2290G", "A2293G", "A2386G", "G2431A", "A2461G", "A2462G", "A2463G", "A2519G", "T2521G", "C2536T", "A2557G", "G2566A", "G2567T", "A2602C", "T2608C", "A2611G", "T2638C", "G2656A", "A2821G", "G2872A", "G2878A", "A2925G", "A2929G", "C2953A", "G2980A", "C3006A", "T3052C", "C3067A", "A3211G", "A3249G", "T3328C", "A3334T", "A3367G", "G3391A", "A3449G", "A3457G", "A3481G", "G3484A", "G3494A", "G3523A", "C3542T", "A3565G", "T3566G", "C3649T", "A3676G", "G3685A", "A3715G", "T3757A", "G3772A", "A3775G", "G3836A", "T3856C", "T3970C", "A3989G", "C4072T", "G4092C", "C4149T", "T4153A", "A4156G", "G4175A", "G4225A", "A4303G", "T4397A", "T4543G", "G4616A", "G4642A", "G4677A", "A4693G", "A4695G", "G4697A", "C4742T", "G4766A", "G4949A", "T4976C", "T4991C", "A5042C", "A5065G", "A5069T", "G5087T", "A5089G", "G5137A", "T5162C", "G5226A", "T5293G", "G5312A", "T5354A", "T5357A", "C5391T", "A5398C", "G5403A", "G5415T", "G5448A", "T5454C", "A5463T", "T5472C", "T5491A", "C5513G", "A5545G", "A5567G", "T5568C", "G5599T", "T5600A", "C5602T", 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"R192K"], "p1": ["S9N"], "p17": ["K28Q", "L46V", "S49G", "M61I", "L75I", "Y79H", "T84V", "Q90R", "E93D", "N109K", "S125N", "K127T"], "p24": ["L83T", "V86L", "H87Q", "I91L", "M96I", "S102G", "G116A", "E128D", "K154R", "T171A", "T178S", "E180D", "A207T"], "p6": ["-26L", "K31R", "L38V", "T39S", "S40A", "S47N", "S51L"], "p7": ["D48E"], "pro": ["V15I", "K20R", "M89I", "I93L"], "rev": ["I18A", "Y28Q", "K32G", "Q57R", "T62A", "L73F", "D99G", "P103S", "G104V", "C107N", "R113G", "T114A", "*117E"], "tat": ["I8L", "Q13H", "R29N", "L39I", "S46C", "T57A", "N64S", "L74S", "S75T", "P81Q"], "vif": ["R19K", "V31I", "K36R", "R37G", "K160R", "R167S", "K168R", "R184K"], "vpr": ["G41E", "I63M", "V70I", "P96S"], "vpu": ["I2Q", "I18L", "V21I", "V22A", "I25V", "V26A", "G27F", "R47A", "Q66H", "N80Y", "D81G"]}, "labels": {"aa": "INT: A21T, I72V, G106A, A125V, L208I, D256E, V281M; RT-p51: I5V, T39A, S48T, N123G, I142V, A158S, E169D, K277R, A304E, D324E, K385R, E413D; RT-p66: I5V, T39A, S48T, S123G, I142V, A158S, E169D, K277R, A304E, D324E, K385R, E413D, I452V, V467I, H483Y, L491V; gp120: N1S, D4E, K18E, N64K, V92I, D105E, -107K, N108I, -109S, T110S, -111S, -112N, -113S, -114S, -115S, -116L, -117C, -118Q, -119K, -120H, -124G, S130T, K141R, K143Q, N157D, N159K, F195Y, E204K, P210S, K212T, S228T, G240E, R243M, L260F, N261K, T269S, N272S, I281L, D294E, V305I, T308Q, N312E, Q316L, V317I, K319T, R322G, -323N, -327N, N328S, K329T, I331V, N335T, I343V, K361N, T366S, -368K, -370S, -371T, -372A, E381G, -382T, -384D, P389Q, R397H, Q412P, E414K, D418E, N435S, T436A, R448K, N450I; gp41: I4L, A14T, L81I, I84L, E110N, D113N, N114M, M115T, T116-, Q129H, K144I, D148E, I173L, I210N, R214G, S239G, N251S, R259L, I281A, G286W, A289T, N298R, N305D, A306T, T307V, I309V, A325I, I329F; nef: E28S, I43V, T48Q, A49N, T51-, A56T, E59K, E64D, K104R, F120Y, I133V, R151Q, E158K, C169S, M173I, R178G, S187T, R192K; p1: S9N; p17: K28Q, L46V, S49G, M61I, L75I, Y79H, T84V, Q90R, E93D, N109K, S125N, K127T; p24: L83T, V86L, H87Q, I91L, M96I, S102G, G116A, E128D, K154R, T171A, T178S, E180D, A207T; p6: -26L, K31R, L38V, T39S, S40A, S47N, S51L; p7: D48E; pro: V15I, K20R, M89I, I93L; rev: I18A, Y28Q, K32G, Q57R, T62A, L73F, D99G, P103S, G104V, C107N, R113G, T114A, *117E; tat: I8L, Q13H, R29N, L39I, S46C, T57A, N64S, L74S, S75T, P81Q; vif: R19K, V31I, K36R, R37G, K160R, R167S, K168R, R184K; vpr: G41E, I63M, V70I, P96S; vpu: I2Q, I18L, V21I, V22A, I25V, V26A, G27F, R47A, Q66H, N80Y, D81G"}}}, {"name": "KP718914", "node_attrs": {"div": 0.14022, "accession": "KP718914", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2006.0}, "Strain_name": {"value": "263_26"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-304A", "-305T", "G317A", "G365C", "G407A", "C467T", "G495A", "A512G", "A515C", "A516T", "A520G", "A524G", "G534A", "C535G", "A562G", "A569G", "C587T", "C605A", "A619C", "G667A", "C668T", "G690A", "T722C", "G762A", "T763C", "C765T", "C773T", "A774G", "G803A", "G810A", "A815G", "G837A", "T858C", "A869G", "G911A", "A968C", "A978C", "T988C", "A998G", "T1004G", "C1005G", "A1025G", "A1034G", "A1046G", "A1052T", "C1062G", "A1076G", "A1115G", "C1137T", "T1181A", "G1184A", "T1235C", "C1243T", "A1279C", "A1292T", "G1298A", "C1299T", "G1424A", "C1446A", "A1447C", "C1449A", "A1452-", "C1453-", "A1454-", "A1455-", "A1456-", "T1457-", "G1472A", "T1481C", "C1556T", "G1586A", "G1589A", "A1592G", "C1616A", "G1619A", "A1643G", "T1646G", "T1676C", "G1725A", "G1736A", "G1743-", "C1744-", "C1745-", "-1746G", "-1747C", "-1748T", "C1756A", "A1758C", "G1760A", "C1767A", "C1768A", "G1775-", "A1776-", "A1777-", "A1794G", "T1796C", "C1825A", "C1826G", "A1835G", "G1912A", "A1969G", "A1980G", "T1986C", "G2002A", "T2024C", "A2038G", "A2089G", "T2104C", "A2161G", "G2173A", "A2191G", "A2194C", "T2195C", "C2206T", "A2210T", "C2211T", "A2233G", "G2275A", "C2281T", "T2302C", "C2335T", "A2374G", "A2398G", "A2404G", "G2422A", "T2499C", "C2615A", "A2625G", "A2626T", "G2713A", "A2714G", "A2815G", "A2818G", "G2830A", "G2837A", "G2842A", "T2863C", "T2905C", "C2909G", "C2930T", "G3080A", "G3094A", "C3175T", "A3202G", "A3205G", "T3219C", "C3307G", "C3319T", "C3322A", "T3349C", "C3355T", "T3380C", "T3399C", "C3415T", "A3451G", "A3454G", "A3508G", "A3543G", "G3553A", "G3564A", "T3610C", "G3631A", "T3652C", "G3667A", "C3712T", "G3769A", "A3781T", "T3784C", "G3796A", "A3805G", "G3846A", "G3877A", "A3910G", "T3943C", "T3954C", "T3967C", "C3977T", "C4021T", "A4063T", "A4071T", "A4105G", "G4109A", "G4145A", "C4146G", "A4176G", "C4180T", "T4198C", "G4228A", "T4234C", "T4240C", "G4264A", "G4268A", "G4366A", "G4376A", "C4426T", "T4435C", "T4537A", "C4650A", "A4692G", "A4694C", "T4701A", "T4702G", "T4712C", "C4757T", "G4767A", "C4786A", "C4803A", "A4820C", "A4861G", "T4910C", "C4914T", "A4937C", "A4956C", "C4965T", "T4985C", "A4988G", "C5019T", "T5027C", "G5066A", "T5091C", "G5099A", "C5168T", "G5215A", "C5221T", "C5237T", "T5314C", "C5321T", "G5362A", "G5382T", "T5424C", "G5433A", "A5444C", "C5445A", "C5446A", "A5462G", "C5469T", "T5475C", "C5479T", "A5481C", "T5482A", "A5483C", "T5492C", "A5495G", "G5496C", "T5511C", "C5514A", "C5546G", "A5547C", "A5555C", "C5556A", "A5601T", "G5626A", "T5636C", "G5662C", "C5663T", "G5683A", "A5685T", "G5686A", "C5704T", "G5711A", "G5725A", "A5760G", "G5794-", "A5795-", "A5796-", "T5798-", "C5801A", "A5802G", "C5803G", "A5805G", "C5806T", "T5808G", "-5809G", "-5810C", "-5811A", "G5812A", "C5859T", "A5865G", "A5916C", "A5921C", "G6028A", "A6030T", "A6066G", "A6076C", "G6079A", "T6100C", "C6165T", "G6167A", "A6174C", "A6179G", "-6180T", "-6181G", "T6184A", "A6185G", "-6186A", "T6187C", "-6189C", "-6190T", "-6205G", "-6206T", "-6207G", "-6210T", "-6211G", "-6212T", "-6213G", "-6214A", "-6215C", "-6216A", "-6217G", "-6218A", "-6222C", "-6223A", "-6225C", "A6229C", "G6267A", "G6274A", "G6292A", "T6295C", "A6329G", "C6370T", "T6373C", "G6466T", "A6476G", "A6484G", "A6535G", "A6576G", "A6595G", "T6599C", 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"C8062T", "G8105A", "A8119G", "G8130A", "G8143A", "C8145T", "C8149T", "G8161A", "C8169T", "T8209C", "C8213T", "T8215A", "C8268T", "A8272G", "T8277C", "T8287G", "A8288C", "C8311T", "A8323G", "A8388G", "G8393A", "C8412T", "T8414G", "A8425T", "A8456G", "G8469A", "-8488C", "-8490A", "-8491A", "-8492A", "G8534A", "G8554A", "A8555G", "G8590C", "G8604A", "C8661A", "C8670A", "G8678A", "C8688A", "T8711C", "T8740C", "T8770A", "A8801G", "G8822A", "A8846G", "T8864G", "G8882A", "T8887G", "G8888A", "A8892C", "A8915G", "G8945C", "C9073T", "T9078C", "T9084G"], "INT": ["S24N", "I60T", "E96D", "Y99F", "V112I", "A124S", "N134G", "V165I", "V201I", "N254K"], "RT-p51": ["T39L", "I135T", "Q174K", "E177G", "K207E", "D248N", "P272A", "V329I", "I375T", "D404E", "I435T"], "RT-p66": ["T39L", "S123N", "I135T", "Q174K", "E177G", "K207E", "D248N", "P272A", "V329I", "I375T", "D404E", "I435T", "I452M", "H483R", "G490E"], "gp120": ["A2V", "D4G", "D21A", "T23P", "E59V", "N71S", "E74D", "D105V", "V106N", "-107V", "N108T", "-109D", "E125-", "M126-", "R138K", "N157K", "N159D", "E204D", "T208A", "E241G", "F249L", "D251N", "T255N", "N261D", "V264I", "N267T", "H280R", "A288V", "G293D", "D294V", "D297N", "Q300K", "H302Y", "N304T", "S306N", "K307E", "Q316R", "K319E", "R322-", "K324Q", "F325K", "-326E", "-327L", "N334D", "N335E", "S336P", "T344I", "K361I", "-368E", "N369K", "-370N", "N378-", "T380S", "E381T", "-382N", "-384K", "T385N", "V396I", "R397N", "R416K", "D418V", "N420D", "L425V", "N432V", "-433H", "T436G", "N437T", "P442Q", "T443I", "G445R", "K464N"], "gp41": ["V101N", "D109E", "E110D", "D125S", "N166H", "N212S", "A268T", "R276H", "A289V", "T307I", "A322V", "I329L"], "nef": ["I16V", "P24S", "E28I", "-50K", "R71K", "G83A", "G88S", "Q107K", "L110I", "H116N", "I133T", "F143Y", "I168M", "D174E", "M182R", "K184Q", "E201D"], "p1": ["I5M"], "p17": ["A54T", "M61L", "E62G", "A67S", "K76R", "K95T", "S111N", "A119T"], "p24": ["V11T", "H12Y", "I15V", "V27I", "V36I", "E79D", "V86A", "I91M", "P92A", "L111V", "I115M", "T171V", "G183T"], "p6": ["G16R", "-26Q", "K27Q", "P30K", "K33-", "T39A", "P49Q"], "pro": ["L10V", "I13V", "E61G", "V63T"], "rev": ["Q11A", "T14Q", "N50D", "P72S", "S86N", "N91D", "D99N", "Q101*", "E105K"], "tat": ["E2D", "N23T", "Q24K", "Q35Y", "Y36T", "L39S", "K40S", "T57S", "H60P", "T77A", "R78K"], "vif": ["H22N", "K36D", "L39R", "D61N", "T67K", "H73N", "E78D", "K92R", "H110Y", "E117D", "I124L", "H127Y"], "vpr": ["H45Y", "G86E", "A93S"], "vpu": ["A7T", "V10A", "I13V", "A19L", "V26T", "G27I", "R35K", "D40N", "D60E", "T61E", "E62L", "E63A", "A65L", "Q66M", "L67-", "V69-"]}, "labels": {"aa": "INT: S24N, I60T, E96D, Y99F, V112I, A124S, N134G, V165I, V201I, N254K; RT-p51: T39L, I135T, Q174K, E177G, K207E, D248N, P272A, V329I, I375T, D404E, I435T; RT-p66: T39L, S123N, I135T, Q174K, E177G, K207E, D248N, P272A, V329I, I375T, D404E, I435T, I452M, H483R, G490E; gp120: A2V, D4G, D21A, T23P, E59V, N71S, E74D, D105V, V106N, -107V, N108T, -109D, E125-, M126-, R138K, N157K, N159D, E204D, T208A, E241G, F249L, D251N, T255N, N261D, V264I, N267T, H280R, A288V, G293D, D294V, D297N, Q300K, H302Y, N304T, S306N, K307E, Q316R, K319E, R322-, K324Q, F325K, -326E, -327L, N334D, N335E, S336P, T344I, K361I, -368E, N369K, -370N, N378-, T380S, E381T, -382N, -384K, T385N, V396I, R397N, R416K, D418V, N420D, L425V, N432V, -433H, T436G, N437T, P442Q, T443I, G445R, K464N; gp41: V101N, D109E, E110D, D125S, N166H, N212S, A268T, R276H, A289V, T307I, A322V, I329L; nef: I16V, P24S, E28I, -50K, R71K, G83A, G88S, Q107K, L110I, H116N, I133T, F143Y, I168M, D174E, M182R, K184Q, E201D; p1: I5M; p17: A54T, M61L, E62G, A67S, K76R, K95T, S111N, A119T; p24: V11T, H12Y, I15V, V27I, V36I, E79D, V86A, I91M, P92A, L111V, I115M, T171V, G183T; p6: G16R, -26Q, K27Q, P30K, K33-, T39A, P49Q; pro: L10V, I13V, E61G, V63T; rev: Q11A, T14Q, N50D, P72S, S86N, N91D, D99N, Q101*, E105K; tat: E2D, N23T, Q24K, Q35Y, Y36T, L39S, K40S, T57S, H60P, T77A, R78K; vif: H22N, K36D, L39R, D61N, T67K, H73N, E78D, K92R, H110Y, E117D, I124L, H127Y; vpr: H45Y, G86E, A93S; vpu: A7T, V10A, I13V, A19L, V26T, G27I, R35K, D40N, D60E, T61E, E62L, E63A, A65L, Q66M, L67-, V69-"}}}]}, {"name": "CRF11_cpx_NODE_0000007", "node_attrs": {"div": 0.08662999999999998, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-304A", "A620G", "C679A", "C1220T", "T1238C", "A3403G", "A4784G", "C5627T", "T6457G", "A6935G", "-6958T", "-6974A", "A7108C", "G7168-", "A7169-", "T7932C", "A8272T", "A8375G", "A8408C", "-8488C", "-8490C", "-8491A"], "gp120": ["M126I", "N201R", "P263T", "K265R", "K361G"], "gp41": ["I210T", "R214K"], "nef": ["-50Q"], "p17": ["T115K"], "tat": ["S75P", "R78T"], "vpu": ["A7V"]}, "labels": {"aa": "gp120: M126I, N201R, P263T, K265R, K361G; gp41: I210T, R214K; nef: -50Q; p17: T115K; tat: S75P, R78T; vpu: A7V"}}, "children": [{"name": "CRF11_cpx_NODE_0000008", "node_attrs": {"div": 0.08975999999999998, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A562G", "G1302A", "C1754-", "G2698A", "G3493A", "G4175A", "T5314C", "G5538A", "C5551T", "A5601T", "G5644A", "A5866C", "G5915A", "G5987T", "G6175C", "-6189C", "G6582A", "A6810C", "T6875A", "A6936G", "-6961T", "-6966A", "-6971A", "-6994A", "-7165C", "G7754T", "G7765A", "T8257A", "T8296C", "A8400T", "C8460T", "A8461T"], "gp120": ["D21N", "A45S", "R243K", "K319T", "L341I", "-373S"], "gp41": ["A151S"], "nef": ["I20L", "H40F"], "p17": ["K76R"], "p24": ["V191I"], "p6": ["S47N"], "rev": ["S8N"]}, "labels": {"aa": "gp120: D21N, A45S, R243K, K319T, L341I, -373S; gp41: A151S; nef: I20L, H40F; p17: K76R; p24: V191I; p6: S47N; rev: S8N"}}, "children": [{"name": "CRF11_cpx_NODE_0000009", "node_attrs": {"div": 0.10495999999999998, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G378T", "A386G", "C435T", "A437G", "C496G", "C587T", "G615A", "G620A", "C773T", "A774G", "T992G", "A998G", "C1005G", "A1079G", "G1101A", "T1220C", "C1238T", 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"T7075C", "A7152G", "C7156A", "G7166-", "A7167-", "C7170-", "C7171-", "T7447C", "T7603C", "A7676G", "G7705A", "T7796A", "T7921C", "T7930C", "C7932A", "A7943C", "A8032G", "C8033A", "G8130A", "C8145T", "C8155T", "T8272A", "C8286G", "C8311T", "A8531T", "T8770A", "T8789C", "G8804A", "C8825T", "T8847A", "T8903C", "G8917A", "G8945A"], "INT": ["A124S"], "RT-p51": ["P14A", "F214L", "S251C", "S379A"], "RT-p66": ["P14A", "S123N", "F214L", "S251C", "S379A", "V467I"], "gp120": ["T35P", "D105-", "V106-", "N108-", "T110-", "S160N", "N334D", "S336P", "G351R", "-370S", "-371T", "-375E", "N379-", "T385-"], "gp41": ["L9F", "V101I", "S165T", "T210N", "N212S", "K214Q", "L244I", "R276H", "A325V", "A328G"], "nef": ["F143Y", "C169S", "R192K"], "p17": ["A15S", "A54G", "V94I"], "p24": ["I15V", "H87Q", "P92A", "V124I", "E187D", "G225S"], "pro": ["L10I", "D37N", "R57K"], "rev": ["Y28Q", "K32T", "T62D", "P103S"], "tat": ["Y36H", "T57A", "E71K", "L74S", "P75T", "T77A", "T78N"], "vif": ["L39M", "K141Q", "T159A", "S186N"], "vpr": ["P96S"], "vpu": ["V20I", "G27F"]}, "labels": {"aa": "INT: A124S; RT-p51: P14A, F214L, S251C, S379A; RT-p66: P14A, S123N, F214L, S251C, S379A, V467I; gp120: T35P, D105-, V106-, N108-, T110-, S160N, N334D, S336P, G351R, -370S, -371T, -375E, N379-, T385-; gp41: L9F, V101I, S165T, T210N, N212S, K214Q, L244I, R276H, A325V, A328G; nef: F143Y, C169S, R192K; p17: A15S, A54G, V94I; p24: I15V, H87Q, P92A, V124I, E187D, G225S; pro: L10I, D37N, R57K; rev: Y28Q, K32T, T62D, P103S; tat: Y36H, T57A, E71K, L74S, P75T, T77A, T78N; vif: L39M, K141Q, T159A, S186N; vpr: P96S; vpu: V20I, G27F"}}, "children": [{"name": "AJ291718", "node_attrs": {"div": 0.12746, "accession": "AJ291718", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 1997.0}, "Strain_name": {"value": "MP818"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C6T", "C8T", "A14G", "G20A", "C23T", "G27C", "T30G", "A34G", "G43C", "C44T", "A55C", "A59C", 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"E432G", "I435L"], "RT-p66": ["K11Q", "I142V", "T359A", "V372I", "A376C", "K431Q", "E432G", "I435L", "S534T", "V548I"], "gp120": ["K31Q", "S45Y", "P57L", "E59G", "I126M", "I133V", "I137L", "R138I", "K140R", "K141R", "K143Q", "R150K", "N158D", "V173I", "G240E", "E241K", "D251N", "L260F", "S262N", "N272G", "I281L", "Q287H", "D294A", "N304K", "T308A", "N311L", "-323G", "T345S", "S365N", "-368F", "-372W", "-374S", "E375Q", "-376E", "-377L", "-379G", "-382P", "-433S", "N434T", "T436E", "N437T", "E438-", "T439-"], "gp41": ["A30V", "N140T", "N160S", "I193V", "S212T", "D230G", "A289T", "S302N", "A306T", "A322V"], "nef": ["E28D", "A33V", "Q50H", "A53D", "A54T", "E63D", "G83A", "K104Q", "Q107K", "N126E", "I133V", "I168M", "M182K", "K184V", "E201D"], "p17": ["I60L", "E62G", "V82L", "Q90H", "N126S", "K127N"], "p2": ["-10V", "I13-"], "p24": ["A14P", "E98D", "E128D", "T171A", "A207T"], "p6": ["N47S", "L50*", "S51L", "Q52K"], "p7": ["K41R"], "pro": ["T12K", "V63I"], "rev": ["R17K", "K30N", "S92P", "C107D"], "tat": ["Q17R", "Q35P", "S46Y", "K63E", "A77P"], "vif": ["K36R", "R50K", "E63D", "L91M", "M109I", "K122E", "M189A"], "vpr": ["N16S", "P37L", "N48D"], "vpu": ["V7A", "S8G", "F16A", "A19V", "V21I", "R35K", "Q66R", "L76Q"]}, "labels": {"aa": "INT: E11D, E13D, A21T, L74M, A91T, A125T, V165I, E167D; RT-p51: K11Q, I142V, T359A, V372I, A376C, K431Q, E432G, I435L; RT-p66: K11Q, I142V, T359A, V372I, A376C, K431Q, E432G, I435L, S534T, V548I; gp120: K31Q, S45Y, P57L, E59G, I126M, I133V, I137L, R138I, K140R, K141R, K143Q, R150K, N158D, V173I, G240E, E241K, D251N, L260F, S262N, N272G, I281L, Q287H, D294A, N304K, T308A, N311L, -323G, T345S, S365N, -368F, -372W, -374S, E375Q, -376E, -377L, -379G, -382P, -433S, N434T, T436E, N437T, E438-, T439-; gp41: A30V, N140T, N160S, I193V, S212T, D230G, A289T, S302N, A306T, A322V; nef: E28D, A33V, Q50H, A53D, A54T, E63D, G83A, K104Q, Q107K, N126E, I133V, I168M, M182K, K184V, E201D; p17: I60L, E62G, V82L, Q90H, N126S, K127N; p2: -10V, I13-; p24: A14P, E98D, E128D, T171A, A207T; p6: N47S, L50*, S51L, Q52K; p7: K41R; pro: T12K, V63I; rev: R17K, K30N, S92P, C107D; tat: Q17R, Q35P, S46Y, K63E, A77P; vif: K36R, R50K, E63D, L91M, M109I, K122E, M189A; vpr: N16S, P37L, N48D; vpu: V7A, S8G, F16A, A19V, V21I, R35K, Q66R, L76Q"}}}, {"name": "CRF11_cpx_NODE_0000010", "node_attrs": {"div": 0.12037999999999999, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-305T", "G413T", "A516C", "G693A", "G803A", "G977A", "G1089A", "T1235C", "A1265G", "C1299T", "C1304T", "A1350C", "A1476G", "A1526G", "A1544G", "C1598T", "G1657A", "G1685A", "G1725A", "-1754T", "G1760A", "G1819A", "A1835G", "G1849A", "G1912A", "A1985G", "A2108G", "G2447A", "G2459A", "T2632C", "G2662A", "C2797T", "C2848T", "T3225A", "T3262C", "C3294T", "G3439A", "T3602A", "A3616T", "C3653A", "A3654G", "A3675C", "A3703C", "T3755A", "C3756A", "A4306G", "C4318T", "A4391T", "T4397A", "A4522G", "C4534T", "A4555G", "A4625G", "T4667C", "G4696A", "T4702A", "C4715T", "A4751G", "G4764A", "C5056A", "T5091C", "G5094A", "G5128A", "T5162C", "A5302G", "G5415A", "G5427A", "T5442C", "T5451C", "A5581G", "A5643G", "G5647A", "A5649C", "T5705A", "G5729A", "C5763T", "A5796G", "A5802C", "A5805G", "T5857A", "A5896G", "T6024C", "C6165-", "T6166-", "G6167-", "-6193T", "-6194A", "-6196C", "-6199T", "-6214A", "A6226-", "A6263G", "A6265G", "A6275C", "A6279C", "G6292A", "G6345T", "T6541C", "A6594C", "A6602T", "C6619T", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6719C", "C6758T", "C6838-", "A6854G", "T6856G", "C6885T", "T6922C", "-6957A", "A6959G", "A6960G", "-6968G", "-6977G", "-6984C", "A7002-", "G7197A", "C7201T", "A7216G", "G7269A", "G7366A", "G7459A", "T7605G", "G7628A", "G7633T", "C7688A", "G7790A", "A7938G", "G7949A", "A7996C", "T8047C", "A8185G", "T8197G", "A8204G", "A8227C", "A8241C", "G8276T", "A8323C", "T8366C", "T8411C", "-8492G", "T8701A"], "INT": ["T206S", "L208I", "R284G"], "RT-p51": ["I5V", "V118I", "E122K", "A376G", "L377Q", "T400I"], "RT-p66": ["I5V", "V118I", "E122K", "A376G", "L377Q", "T400I", "L503M", "Q507H", "Q520R", "K527T", "S554N"], "gp120": ["N1K", "-116S", "I137V", "K141Q", "K142T", "R164M", "E247A", "T250S", "S278G", "F289L", "H302Y", "Q315K", "D334E", "T344I", "R448K", "R472K"], "gp41": ["I101S", "D109N", "E110D", "Q129K", "D163N", "A216T", "R231S", "N298K", "I301V", "E313A", "V325F"], "nef": ["I43V", "F120Y"], "p1": ["S9N"], "p17": ["K26N", "M61L", "A120T"], "p24": ["G120S", "A207P"], "p6": ["G16R"], "p7": ["S4G"], "pro": ["I13V"], "rev": ["N50H", "S67P", "R113G", "*117E"], "tat": ["R29K", "I69V"], "vif": ["R37K", "M39K", "G60R", "T157K", "A170T", "R181K"], "vpr": ["M19I"], "vpu": ["V14I", "L33Q", "R41K", "E62D"]}, "labels": {"aa": "INT: T206S, L208I, R284G; RT-p51: I5V, V118I, E122K, A376G, L377Q, T400I; RT-p66: I5V, V118I, E122K, A376G, L377Q, T400I, L503M, Q507H, Q520R, K527T, S554N; gp120: N1K, -116S, I137V, K141Q, K142T, R164M, E247A, T250S, S278G, F289L, H302Y, Q315K, D334E, T344I, R448K, R472K; gp41: I101S, D109N, E110D, Q129K, D163N, A216T, R231S, N298K, I301V, E313A, V325F; nef: I43V, F120Y; p1: S9N; p17: K26N, M61L, A120T; p24: G120S, A207P; p6: G16R; p7: S4G; pro: I13V; rev: N50H, S67P, R113G, *117E; tat: R29K, I69V; vif: R37K, M39K, G60R, T157K, A170T, R181K; vpr: M19I; vpu: V14I, L33Q, R41K, E62D"}}, "children": [{"name": "KP718937", "node_attrs": {"div": 0.13754, "accession": "KP718937", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2004.0}, "Strain_name": {"value": "119_28"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G119T", "C245T", "G275A", "T378A", "C379A", "A388T", "A389G", "T479C", "G518A", "A563G", "C605A", "A660G", "G837A", "T884C", "A891G", "A978G", "A1002G", "A1022G", "C1060G", "A1280T", "A1302G", "G1404A", "C1730T", "A1771G", "T1783G", "A1908G", "A1918G", "G2002A", "C2199T", "A2332G", "T2369C", "G2411A", "A2455G", "A2462G", "C2536T", "A2683T", "A2755G", "G2837A", "T3049C", "G3208A", "A3249G", "G3279A", "G3340A", "G3427A", "A3454G", "G3463A", "T3550C", "G3553A", "C3688T", "G3766A", "G3769A", "C4144T", "T4147G", "A4156G", "T4165C", "G4276A", "A4407G", "T4585C", "G4637A", "G4765T", "G4766A", "G4878A", "A5049G", "G5066A", "T5160C", "C5237T", "A5247G", "T5260C", "C5351A", "C5358G", "G5382T", "C5397A", "A5481G", "C5546A", "T5612C", "C5620T", "A5622C", "A5628T", "A5696G", "A5717G", "A5751G", "-5793T", "T5808G", "T5941C", "C5957T", "C6023A", "A6164-", "A6168-", "T6169-", "G6170-", "T6171-", "A6172-", "C6175A", "A6179G", "A6180T", "C6183G", "A6185T", "T6187A", "C6189A", "-6190C", "-6191A", "-6192G", "-6195C", "-6197A", "-6198C", "-6200T", "-6201C", "-6202A", "-6215A", "-6216A", "-6217G", "-6218G", "-6219T", "-6220G", "-6221T", "-6222A", "-6223A", "-6224G", "-6225T", "-6226C", "G6227A", "A6229G", "G6232A", "G6280A", "G6314A", "A6320C", "T6341A", "C6370G", "T6382C", "C6411T", "A6535G", "C6559T", "G6566T", "A6715G", "A6773G", "A6774C", "A6781C", "G6819A", "T6828-", "T6829-", "-6835T", "-6838T", "C6919T", "G6935A", "G6936A", "-6956G", "T6967C", "-6970A", "A6974G", "-6975A", "-6976T", "-6979C", "-6980A", "-6981C", "T6983G", "G6989T", "A7000-", "A7001-", "T7003-", "G7004T", "C7008A", "G7026A", "C7084T", "G7147T", "G7162A", "A7234G", "C7328T", "C7463A", "G7534A", "A7688G", "A7689G", "T7968C", "A8076G", "T8091G", "G8136T", "A8163G", "A8170C", "C8182T", "G8219A", "C8232T", "A8273C", "A8281T", "A8284G", "T8290C", "A8435G", "C8440T", "T8531G", "G8535A", "C8675T", "C8688A", "A8750G", "C8751T", "C8775T", "G8805A", "G8808A", "A8812C", "G8861A", "A8874G", "A8909G", "G8936A", "G8942T", "C8964T", "G8991A", "C9017T", "C9018T", "G9026A", "T9072G", "T9078C", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "A9095-", "G9096-", "T9097-", "T9098-", "A9099-", "G9100-", "A9101-", "C9102-", "C9103-", "A9104-", "G9105-", "A9106-", "T9107-", "C9108-", "T9109-", "G9110-", "A9111-", "G9112-", "C9113-", "C9114-", "T9115-", "G9116-", "G9117-", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-", "G9127-", "G9128-"], "INT": ["S124G", "K211R", "D288N"], "RT-p51": ["T35I", "V106I", "N123D", "D248N", "K385R", "R395K"], "RT-p66": ["T35I", "V106I", "N123D", "D248N", "K385R", "R395K"], "gp120": ["P35S", "P57T", "T104K", "-111N", "-112V", "-113S", "-114S", "-115N", "V154I", "I156L", "N160V", "Y163N", "P186L", "A238S", "T263P", "N272G", "K307A", "E309D", "R322-", "K324Q", "F325K", "-326K", "-327Y", "G361K", "-368D", "N369G", "T371N", "-372G", "-374D", "E375D", "-376T", "-377A", "-379Y", "-382Y", "R391K", "N435S"], "gp41": ["L54M", "E119Q", "K129G", "I222T", "H258R", "F263C", "G278V", "N287S", "A306T", "A310V", "L326F", "L340F"], "nef": ["A33V", "E65K", "H116N", "E155K", "A156T", "N157T", "M173I", "R178G"], "p17": ["S15K", "K18M", "N109D"], "p24": ["V36I", "M54V", "L83V", "I91V", "T110S", "I191V"], "p6": ["K31R", "L35R"], "pro": ["N37S"], "rev": ["Q11K", "S34N", "T108P", "P112S"], "tat": ["E2D", "N7K", "Q17R", "A57E", "S87P"], "vif": ["R60I", "V98I", "T155A", "C192R"], "vpr": ["I19T", "H45Y", "N48S", "R85G", "A93S"], "vpu": ["I2T", "Q5Y", "Y30C", "K37R"]}, "labels": {"aa": "INT: S124G, K211R, D288N; RT-p51: T35I, V106I, N123D, D248N, K385R, R395K; RT-p66: T35I, V106I, N123D, D248N, K385R, R395K; gp120: P35S, P57T, T104K, -111N, -112V, -113S, -114S, -115N, V154I, I156L, N160V, Y163N, P186L, A238S, T263P, N272G, K307A, E309D, R322-, K324Q, F325K, -326K, -327Y, G361K, -368D, N369G, T371N, -372G, -374D, E375D, -376T, -377A, -379Y, -382Y, R391K, N435S; gp41: L54M, E119Q, K129G, I222T, H258R, F263C, G278V, N287S, A306T, A310V, L326F, L340F; nef: A33V, E65K, H116N, E155K, A156T, N157T, M173I, R178G; p17: S15K, K18M, N109D; p24: V36I, M54V, L83V, I91V, T110S, I191V; p6: K31R, L35R; pro: N37S; rev: Q11K, S34N, T108P, P112S; tat: E2D, N7K, Q17R, A57E, S87P; vif: R60I, V98I, T155A, C192R; vpr: I19T, H45Y, N48S, R85G, A93S; vpu: I2T, Q5Y, Y30C, K37R"}}}, {"name": "AY371150", "node_attrs": {"div": 0.14375, "accession": "AY371150", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_4041HAN"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A412G", "C471G", "A480G", "A521G", "C528A", "A569G", "A585G", "C586T", "G667A", "T722C", "T746C", "G791A", "T858C", "A978T", "G992A", "A1025G", "G1109A", "A1115G", "C1211A", "G1313A", "T1316C", "C1322T", "A1400G", "T1422C", "C1439T", "A1494-", "A1495-", "A1496-", "G1498A", "A1499G", "A1500C", "T1501G", "T1502A", "-1503A", "-1504T", "-1505T", "C1616T", "A1709G", "G1727A", "G1763A", "C1825A", "C1831A", "G1993A", "G1999A", "A2005G", "T2024C", "C2080G", "A2152C", "T2315C", "A2557G", "C2575T", "C2615A", "A2641G", "T2650C", "C2720T", "G2727A", "G2830T", "C2839A", "T3059G", "T3121C", "G3292T", "A3295C", "A3398C", "A3511C", "G3664A", "G3836A", "A3838G", "G3891A", "T3924G", "G4145A", "G4148A", "A4175G", "G4243A", "C4428T", "T4579C", "A4632C", "G4677A", "A4695G", "C4724G", "C4844T", "G4870A", "G4888A", "C4919T", "T4932G", "A4951G", "G4995A", "A5049C", "G5059A", "G5061C", "T5102C", "A5151G", "G5161A", "G5170A", "G5215A", "C5303T", "T5356C", "G5359C", "G5426A", "A5483T", "T5490C", "A5538G", "C5552A", "A5574G", "C5584T", "A5594G", "C5614A", "C5663T", "A5680C", "A5689T", "C5704A", "A5728C", "T5736A", "-5793C", "G5842A", "A5845G", "T5850C", "G5864A", "C5869T", "T5929C", "A6059G", "A6060G", "T6127C", "G6133A", "C6141T", "-6165G", "-6166C", "-6167A", "A6176T", "A6177G", "C6181T", "C6186G", "-6190T", "-6191T", "-6192C", "-6195A", "-6197T", "-6198G", "-6200A", "-6201G", "-6202T", "-6203A", "-6204G", "-6205T", "-6206G", "-6207G", "-6208A", "-6209A", "-6210T", "-6211C", "-6212C", "-6213A", "C6247T", "T6363C", "C6370T", "G6457A", "A6471G", "T6472G", "C6477T", "C6499T", "G6578A", "A6582G", "G6611T", "G6631A", "C6632T", "C6641A", "T6655C", "G6668A", "G6669A", "G6803A", "C6818A", "A6824G", "G6826A", "-6830G", "-6831A", "-6832A", "-6833A", "-6835C", "A6836-", "A6837-", "A6858G", "C6863T", "-6956A", "T6961G", "G6963T", "-6970C", "-6975T", "-6976G", "A6982G", "A6990G", "A6994G", "G6995A", "-6998G", "-6999A", "-7002G", "C7024T", "A7089C", "A7097T", "C7124T", "A7148G", "A7149G", "T7153G", "C7155T", "-7166G", "-7167A", "-7168G", "-7169A", "-7170C", "-7171C", "A7532C", "A7629C", "T7642G", "C7658G", "G7720A", "A7722C", "A7791G", "T7844A", "A7880G", "C7921T", "A7942G", "A7949C", "G7970A", "A7992G", "A8011C", "G8019A", "G8079A", "T8103C", "A8118G", "G8173A", "G8194A", "C8213T", "A8216G", "A8255G", "A8264C", "A8271T", "T8276C", "T8321C", "G8330A", "C8331G", "T8348C", "C8366A", "T8400A", "A8426G", "C8494A", "T8504C", "G8516A", "A8555G", "A8584T", "T8600C", "A8657G"], "INT": ["A21T", "S39N", "M50R", "A125T", "N134D", "T218I", "D286A"], "RT-p51": ["Q174K", "R211K", "Q245H", "D248E", "S322A", "E399D", "I435L"], "RT-p66": ["Q174K", "R211K", "Q245H", "D248E", "S322A", "E399D", "I435L"], "gp120": ["D4N", "K69G", "P96L", "T104S", "-105N", "-106V", "-107N", "-108C", "-109N", "-110T", "-111S", "-112T", "-113N", "-114C", "-115S", "-117G", "-118I", "-119Q", "-120E", "-121M", "E125-", "I126-", "N161S", "V170A", "N206R", "T208I", "V242I", "K243R", "A253S", "L260F", "A291T", "T292G", "D294I", "V317I", "-323K", "K324E", "-326E", "-327N", "N328-", "N335S", "P336S", "-368N", "S370G", "-372K", "-374N", "N378-", "T380-", "E381-", "N383S", "-384D", "-385T", "Q412P", "I415L", "N432G", "-433R", "N434I", "T436E", "N437T"], "gp41": ["F9L", "K77Q", "N109T", "D113E", "N140T", "N163S", "L181I", "I193V", "T216P", "E223K", "D230G", "S239N", "R259Q", "V267A", "E272G", "L304F", "N305D", "I318V", "I321L", "Q323L", "F325L", "A343S"], "nef": ["S8R", "L20I", "T51N", "E63D", "Y81F"], "p17": ["N26S", "L46V", "S49G", "Q65K", "T84V", "Q90H", "S111N"], "p24": ["S225G"], "p6": ["P49Q", "S51*"], "rev": ["N8S", "L13I", "K20R", "T32A", "S34T", "R41Q", "I55L", "V109I", "E116K"], "tat": ["H36L", "S59Y", "P70S", "N78S", "K80N"], "vif": ["M16L", "V31I", "K37E", "S46R", "R95K", "G101D", "S116A", "K122R", "A137T", "T155P", "R158K", "A159P", "M189V", "C192Y"], "vpr": ["N16S", "I84T", "R85P"], "vpu": ["P3T", "A19V", "I25L", "I28L", "Q33K", "K41Q", "V79I", "N80D"]}, "labels": {"aa": "INT: A21T, S39N, M50R, A125T, N134D, T218I, D286A; RT-p51: Q174K, R211K, Q245H, D248E, S322A, E399D, I435L; RT-p66: Q174K, R211K, Q245H, D248E, S322A, E399D, I435L; gp120: D4N, K69G, P96L, T104S, -105N, -106V, -107N, -108C, -109N, -110T, -111S, -112T, -113N, -114C, -115S, -117G, -118I, -119Q, -120E, -121M, E125-, I126-, N161S, V170A, N206R, T208I, V242I, K243R, A253S, L260F, A291T, T292G, D294I, V317I, -323K, K324E, -326E, -327N, N328-, N335S, P336S, -368N, S370G, -372K, -374N, N378-, T380-, E381-, N383S, -384D, -385T, Q412P, I415L, N432G, -433R, N434I, T436E, N437T; gp41: F9L, K77Q, N109T, D113E, N140T, N163S, L181I, I193V, T216P, E223K, D230G, S239N, R259Q, V267A, E272G, L304F, N305D, I318V, I321L, Q323L, F325L, A343S; nef: S8R, L20I, T51N, E63D, Y81F; p17: N26S, L46V, S49G, Q65K, T84V, Q90H, S111N; p24: S225G; p6: P49Q, S51*; rev: N8S, L13I, K20R, T32A, S34T, R41Q, I55L, V109I, E116K; tat: H36L, S59Y, P70S, N78S, K80N; vif: M16L, V31I, K37E, S46R, R95K, G101D, S116A, K122R, A137T, T155P, R158K, A159P, M189V, C192Y; vpr: N16S, I84T, R85P; vpu: P3T, A19V, I25L, I28L, Q33K, K41Q, V79I, N80D"}}}]}]}, {"name": "CRF11_cpx_NODE_0000011", "node_attrs": {"div": 0.09501999999999998, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G10A", "G317A", "A417C", "C539T", "G614T", "T788C", "A1192G", "C1755-", "C1756-", "G1819A", "C2266T", "C2822A", "A3082G", "A3200G", "C3224T", "G3292A", "A3449G", "T3970C", "A4036G", "G5619A", "-6186A", "T6187C", "-6190C", "-6191A", "-6192A", "-6195G", "-6196T", "-6197A", "-6201G", "-6202C", "G6232A", "A6281C", "A6329G", "C6347T", "C6641T", "-6686A", "-6687G", "-6689A", "-6690T", "-6691A", "C6787A", 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I133T; p17: N126S; p24: E180D, G183N, A207P; pro: D37E; rev: A15T, N50K, N91D, P112S; tat: S61D; vif: E78D; vpu: V26A"}}, "children": [{"name": "MF373206", "node_attrs": {"div": 0.15568999999999997, "accession": "MF373206", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "SE"}, "date": {"value": 2016.0}, "Strain_name": {"value": "104CM"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "T355C", "G366A", "G367A", "A368G", "A369G", "C417A", "A418C", "G424A", "C435A", "T479C", "C496G", "A513T", "G540A", "G542A", "A571T", "G579T", "C605A", "A611G", "G632A", "A645G", "G665A", "A669C", "A699C", "G702A", "G703A", "A705G", "C731T", "C765T", "C772G", "C773T", "A774G", "G810A", "A818G", "C845T", "G920A", "C947T", "G956A", "A978C", "A980G", "T988C", "T992G", "A1002T", "A1017C", "A1025C", "T1058C", "T1063C", "A1074G", "T1100C", "G1101A", "G1109A", "A1115C", "A1124G", "T1148C", "C1187A", "C1211T", "T1229C", "G1232A", "G1256A", "A1263T", 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"C8268T", "T8290C", "C8293T", "G8317A", "C8320T", "G8329A", "G8354C", "A8364C", "G8368A", "C8369A", "C8382T", "G8387A", "G8414A", "C8415A", "A8425C", "T8451C", "-8492A", "C8503A", "A8519G", "G8534T", "G8537A", "T8594C", "G8604A", "A8726C", "C8727A", "A8735G", "A8746T", "G8753A", "C8756T", "G8784A", "G8794A", "G8804A", "A8815C", "A8823G", "C8843A", "A8859G", "T8864C", "A8870G", "A8879G", "A8885G", "A8915G", "A8918G", "A8924C", "C8934A", "G8942A", "C8951T", "G8977-", "A8978-", "C8979-", "A8980-", "G8981-", "G8982-", "G8983-", "A8984-", "C8985-", "T8986-", "T8987-", "T8988-", "C8989-", "C8990-", "G8991-", "C8992-", "T8993-", "G8994-", "G8995-", "G8996-", "G8997-", "A8998-", "C8999-", "T9000-", "T9001-", "T9002-", "C9003-", "C9004-", "A9005-", "G9006-", "G9007-", "G9008-", "A9009-", "G9010-", "G9011-", "T9012-", "G9013-", "T9014-", "G9015-", "G9016-", "C9017-", "C9018-", "T9019-", "G9020-", "G9021-", "G9022-", "C9023-", "G9024-", "G9025-", "G9027A", "T9028C", "T9029A", "G9030C", "G9031A", "G9037T", "T9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "A9060-", "A9061-", "A9062-", "G9063-", "C9064-", "A9065-", "G9066-", "C9067-", "C9068-", "G9069-", "C9070-", "T9071-", "T9072-", "C9073-", "T9074-", "C9075-", "G9076-", "C9077-", "T9078-", "T9079-", "G9080-", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "A9095-", "G9096-", "T9097-", "T9098-", "A9099-", "G9100-", "A9101-", "C9102-", "C9103-", "A9104-", "G9105-", "A9106-", "T9107-", "C9108-"], "INT": ["S57G", "G283S"], "RT-p51": ["I5V", "V8I", "K49R", "E169D", "K207Q", "L283I", "D291E", "A376T"], "RT-p66": ["I5V", "V8I", "K49R", "S123N", "E169D", "K207Q", "L283I", "D291E", "A376T", "V452I", "E516K"], "gp120": ["V10I", "N52S", "D105E", "-109C", "-111E", "-112A", "-115N", "-116S", "R138K", "N157D", "N159D", "T161S", "R164K", "V170G", "V173F", "K174T", "A176T", "K179R", "V180L", "H188P", "K199N", "C200R", "R201K", "N206D", "P210A", "S215N", "T216A", "H221R", "V227P", "Q230P", "N234K", "E239Q", "E241K", "V242G", "R245K", "D251F", "T255A", "R265A", "N272G", "K277Q", "A291T", "G293K", "D294V", "N304T", "S306N", "N311K", "N312K", "T313A", "Q315H", "T319D", "K324E", "F325Y", "-327N", "N328S", "K329T", "I332N", "N334A", "G351R", "-368N", "N369F", "-370N", "-371D", "-372S", "-374T", "-375N", "-376G", "-377E", "N379D", "E381N", "-382G", "P389L", "R391K", "K393R", "V396I", "R397N", "G403R", "I411V", "R416T", "D418I", "N420Y", "-433G", "N434T", "N435P", "T436N", "R441I", "G445*", "K464*", "P465S", "R472K", "K474R", "E479Q"], "gp41": ["L9V", "H53Q", "D109S", "I118M", "N125K", "N126D", "S157D", "D163S", "K172R", "L204I", "F206L", "K214E", "E215A", "G220R", "I222T", "R231N", "T232N", "S256C", "F263S", "I264A", "I281T", "Y284F", "G293S", "N305D", "A306T", "T307I", "I309V", "A322V"], "nef": ["K4N", "S8R", "S9K", "P14S", "P25A", "E28A", "A54D", "G88S", "P129T", "Y135F", "V148I", "R151K", "E158A", "N161D", "M173V", "L198M"], "p1": ["K4R"], "p17": ["V7A", "G11K", "K12E", "Q28T", "R30K", "L34I", "A54G", "I60L", "G69R", "Y79F", "V82L", "I92M", "I104V", "K112Q", "T122P", "G123K", "N124D"], "p2": ["M14F"], "p24": ["H12Y", "A14G", "I15V", "V27I", "V86A", "H87Q", "I91F", "M96L", "E98D", "L111P", "I115V", "V124I", "E128D", "D152E", "T178S", "S200T"], "p6": ["I21T", "P23S", "T39A"], "p7": ["R52K"], "pro": ["L10I", "I13V", "V15I", "R57K", "I62V", "V63G"], "rev": ["T14A", "I18V", "K32R", "R38Q", "K50Q", "S54T", "I55L", "T62S", "S67P", "E68A", "Q74L", "H82S", "I102V", "G111E", "R113G", "*117Q"], "tat": ["P3T", "V4I", "I8L", "A21P", "R29Y", "C31S", "Q35Y", "Y36C", "L39V", "H60R", "N64S", "K80Q", "S87P"], "vif": ["H22N", "H48N", "I51M", "Q83H", "G101D", "M109L", "R128I", "R132K", "N140S", "T159A", "K160R", "R167K"], "vpr": ["Y15H", "H45Y", "I61T", "I63T", "A93N", "S94N"], "vpu": ["V7I", "I13V", "V14I", "A15V", "V21I", "I28L", "Y30I", "L33V", "K37R", "Q66H"]}, "labels": {"aa": "INT: S57G, G283S; RT-p51: I5V, V8I, K49R, E169D, K207Q, L283I, D291E, A376T; RT-p66: I5V, V8I, K49R, S123N, E169D, K207Q, L283I, D291E, A376T, V452I, E516K; gp120: V10I, N52S, D105E, -109C, -111E, -112A, -115N, -116S, R138K, N157D, N159D, T161S, R164K, V170G, V173F, K174T, A176T, K179R, V180L, H188P, K199N, C200R, R201K, N206D, P210A, S215N, T216A, H221R, V227P, Q230P, N234K, E239Q, E241K, V242G, R245K, D251F, T255A, R265A, N272G, K277Q, A291T, G293K, D294V, N304T, S306N, N311K, N312K, T313A, Q315H, T319D, K324E, F325Y, -327N, N328S, K329T, I332N, N334A, G351R, -368N, N369F, -370N, -371D, -372S, -374T, -375N, -376G, -377E, N379D, E381N, -382G, P389L, R391K, K393R, V396I, R397N, G403R, I411V, R416T, D418I, N420Y, -433G, N434T, N435P, T436N, R441I, G445*, K464*, P465S, R472K, K474R, E479Q; gp41: L9V, H53Q, D109S, I118M, N125K, N126D, S157D, D163S, K172R, L204I, F206L, K214E, E215A, G220R, I222T, R231N, T232N, S256C, F263S, I264A, I281T, Y284F, G293S, N305D, A306T, T307I, I309V, A322V; nef: K4N, S8R, S9K, P14S, P25A, E28A, A54D, G88S, P129T, Y135F, V148I, R151K, E158A, N161D, M173V, L198M; p1: K4R; p17: V7A, G11K, K12E, Q28T, R30K, L34I, A54G, I60L, G69R, Y79F, V82L, I92M, I104V, K112Q, T122P, G123K, N124D; p2: M14F; p24: H12Y, A14G, I15V, V27I, V86A, H87Q, I91F, M96L, E98D, L111P, I115V, V124I, E128D, D152E, T178S, S200T; p6: I21T, P23S, T39A; p7: R52K; pro: L10I, I13V, V15I, R57K, I62V, V63G; rev: T14A, I18V, K32R, R38Q, K50Q, S54T, I55L, T62S, S67P, E68A, Q74L, H82S, I102V, G111E, R113G, *117Q; tat: P3T, V4I, I8L, A21P, R29Y, C31S, Q35Y, Y36C, L39V, H60R, N64S, K80Q, S87P; vif: H22N, H48N, I51M, Q83H, G101D, M109L, R128I, R132K, N140S, T159A, K160R, R167K; vpr: Y15H, H45Y, I61T, I63T, A93N, S94N; vpu: V7I, I13V, V14I, A15V, V21I, I28L, Y30I, L33V, K37R, Q66H"}}}, {"name": "AJ291719", "node_attrs": {"div": 0.14048999999999998, "accession": "AJ291719", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "FR"}, "date": {"value": 1999.0}, "Strain_name": {"value": "MP1298"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C44T", "G52A", "C96T", "G112A", "A286G", "-305A", "G325A", "G344C", "G354A", "A398G", "A431G", "A515T", "A516C", "A520G", "A548G", "T572C", "T636C", "A656C", "G683A", "C694G", "G709A", "G716T", "G755A", "G771A", "A776G", "G803A", "A866G", "C1061T", "A1073G", "G1089A", "C1137T", "A1292C", "G1298A", "A1367G", "G1418A", "T1427A", "A1445C", "C1446A", "A1447G", "T1451A", "A1461G", "G1474A", "A1475G", "A1476G", "A1495G", "C1511T", "A1580G", "G1664A", "C1680A", "A1733G", "-1754C", "-1755C", "-1756C", "G1852T", "A1918G", "A1985C", "G2002A", "T2083C", "A2131G", "A2174T", "A2179G", "C2199A", "C2206T", "T2263C", "A2311G", "T2425C", "G2459A", "A2462G", "C2464A", "T2499C", "T2527C", "A2579T", "G2686A", "G2699A", "T2749C", "C2909T", "G2921A", "G2950A", "A3031G", "T3045C", "C3067A", "T3068A", "G3085A", "C3095T", "A3124G", "A3145G", "A3154G", "G3206A", "G3208A", "A3268G", "G3340A", "C3352A", "A3421G", "G3484A", "A3490G", "T3550C", "G3556A", "T3589C", "T3602C", "G3631A", "A3733G", "T3754C", "T3755A", "C3756A", "A3808G", "T3844C", "A3866G", "G3869A", "T3904C", "C3908T", "A3931G", "A3985G", "A3989G", "C4072T", "A4083G", "A4084G", "G4109A", "A4111G", "T4234C", "A4285G", "T4288C", "C4426T", "G4573A", "T4640C", "G4677A", "G4735A", "G4749A", "G4764A", "G4784A", "A4820T", "T4932A", "A4937C", "A4946C", "A4951C", "C4965T", "T4991C", "C5006T", "T5027C", "A5049G", "G5143A", "A5151C", "T5239C", "C5280T", "T5281C", "C5397A", "G5415T", "T5451C", "A5453T", "A5462G", "A5463G", "T5482A", "A5483T", "T5491C", "C5552A", "A5581C", "G5599-", "T5601A", "-5603T", "A5611G", "T5617C", "T5636C", "T5679C", "G5686T", "G5687T", "C5704T", "T5705G", "G5711A", "T5727A", "G5729A", "A5760G", "-5791G", "-5792A", "-5793G", "-5797T", "-5799G", "A5906C", "A5907G", "T5951G", "A5952T", "T5986C", "C6023T", "A6136G", "C6145T", "G6167A", "G6170C", "A6173-", "A6174-", "C6175-", "A6179G", "-6180T", "-6181A", "T6184C", "C6189G", "A6192C", "-6193G", "-6194T", "-6198G", "-6199G", "-6203A", "-6204G", "-6205A", "-6206A", "-6207G", "-6208C", "-6209A", "-6210T", "-6211G", "-6212A", "-6214T", "-6216A", "-6217A", "-6220A", "-6223G", "A6233G", "A6249G", "T6250G", "A6251G", "A6262G", "A6263G", "G6267C", "G6269T", "G6277T", "A6278G", "C6281G", "A6282T", "G6303A", "T6306A", "A6311G", "T6322-", "A6323-", "A6324-", "A6330T", "T6331G", "G6336C", "G6339C", "G6346A", "A6352T", "A6353C", "A6354G", "C6370T", "G6457T", "A6461G", "G6480A", "G6530A", "T6551A", "G6569A", "A6628T", "T6634A", "A6648T", "A6649G", "A6686G", "-6688G", "C6692-", "G6693-", "T6694-", "A6695-", "T6696-", "-6698C", "-6699A", "-6700G", "-6701A", "-6702T", "A6714G", "G6716A", "T6719G", "T6745C", "A6751G", "C6752A", "G6767A", "A6773G", "A6774G", "A6776-", "C6777-", "A6778-", "G6779-", "A6780-", "A6781-", "A6797G", "C6810T", "A6811G", "A6824C", "C6838A", "C6843A", "C6859T", "T6860A", "A6926G", "-6956A", "-6957G", "A6962G", "-6963A", "-6964G", "A6966C", "-6968A", "-6972A", "-6975C", "A6985-", "A6989G", "A6994T", "-6997A", "-6998T", "A7001G", "A7002C", "C7008A", "T7045A", "A7063G", "A7089C", "G7094A", "G7102T", "C7108T", "A7113G", "C7124T", "A7152C", "A7158G", "G7166-", "A7167-", "C7170-", "C7171-", "C7174T", "G7190A", "T7222C", "G7324A", "G7366A", "G7391A", "A7396G", "A7440G", "G7441A", "T7447C", "A7462C", "C7474T", "A7525T", "A7533G", "T7603C", "T7609C", "T7624A", "G7640A", "A7666T", "A7691C", "C7692T", "G7705A", "A7722C", "C7747A", "A7800G", "A7807C", "A7822T", "A7832G", "A7847G", "C7942G", "G7949A", "G7979A", "C7998G", "G8019A", "C8062T", "C8065T", "T8067G", "A8069C", "G8070T", "G8098C", "T8113A", "G8130A", "G8143A", "C8145T", "T8153C", "C8155T", "G8168C", "C8169T", "A8172T", "C8213T", "T8278C", "G8288T", "T8321C", "A8323C", "C8342G", "A8367G", "C8413T", "T8460C", "T8461A", "G8479C", "A8484-", "C8488A", "C8490-", "A8491-", "A8493-", "C8494-", "T8505A", "G8508A", "C8510A", "G8528A", "G8558A", "G8561A", "T8600C", "T8829A", "T8835C", "C8840T", "G8852A", "A8874G", "T8903C", "G8917A", "G8945C", "G8974A", "T9072C", "C9073T", "C9129T", "A9135G", "G9137A", "C9181T"], "INT": ["I31V", "V32I", "I72V", "K103R", "V112M"], "RT-p51": ["T27S", "T35K", "E122K", "N123E", "I135T", "S162C", "V202I", "P272S", "V276I", "V317A", "D324E", "L325I", "V371I"], "RT-p66": ["T27S", "T35K", "E122K", "S123E", "I135T", "S162C", "V202I", "P272S", "V276I", "V317A", "D324E", "L325I", "V371I", "S554N"], "gp120": ["K18R", "Y33V", "P57F", "D105N", "V106L", "-111V", "-112T", "-119M", "-120I", "-121E", "-122E", "-123K", "-124G", "K127E", "N132R", "I133V", "I137V", "R138T", "D139Y", "K141N", "K142E", "Q143V", "R150K", "L151H", "I153V", "N158V", "E162-", "N167R", "R201N", "K203E", "G209E", "V226I", "L233I", "E239K", "R265M", "S278G", "R280Q", "Q287R", "A288T", "F289V", "D294A", "Q300K", "V305I", "K307G", "T308W", "E309K", "W310-", "N311-", "Q315E", "T319M", "K324Q", "N335S", "S336T", "N358D", "N369-", "-374W", "Q412P", "E414K", "R416S", "D418N", "N420S", "N432P", "-433N", "N435T", "N437S", "D446N", "K457R"], "gp41": ["A30T", "K46R", "R74S", "K77R", "V101I", "D109N", "D113N", "E119Q", "E121D", "T130L", "N140T", "D148E", "N166S", "I177V", "I182V", "H213Q", "A216T", "G226S", "T232S", "S239N", "N251S", "F255C", "S256L", "L265F", "R276H", "Y284L", "A289L", "Q290L", "L304F", "V329F"], "nef": ["S9G", "P24R", "F40H", "S46T", "T48-", "Q50-", "T51-", "C55S", "A56T", "C163S", "R178G", "R192K", "E201D"], "p17": ["V7I", "M61L", "E62G", "Q90H", "A120G", "S125N", "K127N"], "p2": ["-10V", "I13-"], "p24": ["A14T", "I15M", "L83I", "G120S", "E187D"], "p6": ["L1I"], "p7": ["R3K", "S4G", "K10R"], "pro": ["Q18H", "V63L"], "rev": ["L13I", "K32E", "S34N", "R44K", "P72S", "Q74P", "D84H", "C89S", "D99N", "I102T", "P103S", "C107S"], "tat": ["N7K", "Q13H", "Y26F", "Y36I", "S59Y", "I69L", "T78R"], "vif": ["V31I", "R50K", "V55I", "G60R", "S116T", "E117D", "K122T", "H127Y", "T155A", "S186N", "M189L"], "vpr": ["N16T", "A59V"], "vpu": ["I2V", "V10A", "G27F", "L33W", "R35K", "D40E", "R41K"]}, "labels": {"aa": "INT: I31V, V32I, I72V, K103R, V112M; RT-p51: T27S, T35K, E122K, N123E, I135T, S162C, V202I, P272S, V276I, V317A, D324E, L325I, V371I; RT-p66: T27S, T35K, E122K, S123E, I135T, S162C, V202I, P272S, V276I, V317A, D324E, L325I, V371I, S554N; gp120: K18R, Y33V, P57F, D105N, V106L, -111V, -112T, -119M, -120I, -121E, -122E, -123K, -124G, K127E, N132R, I133V, I137V, R138T, D139Y, K141N, K142E, Q143V, R150K, L151H, I153V, N158V, E162-, N167R, R201N, K203E, G209E, V226I, L233I, E239K, R265M, S278G, R280Q, Q287R, A288T, F289V, D294A, Q300K, V305I, K307G, T308W, E309K, W310-, N311-, Q315E, T319M, K324Q, N335S, S336T, N358D, N369-, -374W, Q412P, E414K, R416S, D418N, N420S, N432P, -433N, N435T, N437S, D446N, K457R; gp41: A30T, K46R, R74S, K77R, V101I, D109N, D113N, E119Q, E121D, T130L, N140T, D148E, N166S, I177V, I182V, H213Q, A216T, G226S, T232S, S239N, N251S, F255C, S256L, L265F, R276H, Y284L, A289L, Q290L, L304F, V329F; nef: S9G, P24R, F40H, S46T, T48-, Q50-, T51-, C55S, A56T, C163S, R178G, R192K, E201D; p17: V7I, M61L, E62G, Q90H, A120G, S125N, K127N; p2: -10V, I13-; p24: A14T, I15M, L83I, G120S, E187D; p6: L1I; p7: R3K, S4G, K10R; pro: Q18H, V63L; rev: L13I, K32E, S34N, R44K, P72S, Q74P, D84H, C89S, D99N, I102T, P103S, C107S; tat: N7K, Q13H, Y26F, Y36I, S59Y, I69L, T78R; vif: V31I, R50K, V55I, G60R, S116T, E117D, K122T, H127Y, T155A, S186N, M189L; vpr: N16T, A59V; vpu: I2V, V10A, G27F, L33W, R35K, D40E, R41K"}}}]}, {"name": "CRF11_cpx_NODE_0000013", "node_attrs": {"div": 0.10376999999999997, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A524G", "C558A", "A571T", "G791A", "T1100C", "G1232A", "A1278G", "A1279G", "-1747C", "-1748C", "C1749T", "T1752C", "G1772A", "C2206T", "A2463G", "C2536T", "A2563C", "C2596T", "T2800C", "A2815G", "G3209A", "C3307T", "T4153C", "T4441A", "A4695G", "T4769G", "G4773A", "A4988G", "A5061C", "T5512G", "C5513T", "C5514A", "A5555G", "G5561A", "A5567G", "T5568C", "A5574G", "C5614A", "C5803A", "A5861-", "A6066G", "T6171C", "A6172C", "-6194A", "-6204G", "-6206A", "-6207G", "T6295A", "A6576G", "A6647G", "G6732A", "C6777A", "G6779A", "A6786G", "C6792T", "A6818G", "A6823G", "-6835T", "C6843A", "C6925T", "A6937C", "-6956A", "T6961G", "-6979A", "-6982A", "-6984C", "G7044A", "C7153A", "G7162T", "A7239C", "A7244G", "G7390A", "A7427G", "A7470G", "A7791G", "A7846G", "A7862G", "T7921G", "A8032T", "C8065T", "T8067G", "C8068G", "T8091G", "C8145G", "C8286G", "C8415G", "C8510A", "A8522G", "T8582A", "A8584T", "G8588A"], "INT": ["N222K"], "RT-p51": ["N123S", "V372I"], "RT-p66": ["V372I"], "gp120": ["V106A", "-111N", "-113T", "-115S", "N159S", "R265E", "T308K", "T313M", "Q315K", "N335S", "N434T", "K457R", "E462A", "K464E"], "gp41": ["S42G", "H53Q", "K56R", "V101A", "I187V", "F206L", "N251S", "F255W", "F263C", "I281S", "A328G"], "nef": ["S8R", "Y81F"], "p17": ["L75I", "Y79F"], "rev": ["T14A", "V16I", "I18A", "K20R", "T62S", "Q74E", "D99E"], "tat": ["S46V", "H60R", "S62N", "N64S"], "vif": ["R37G", "D61E", "E63K"]}, "labels": {"aa": "INT: N222K; RT-p51: N123S, V372I; RT-p66: V372I; gp120: V106A, -111N, -113T, -115S, N159S, R265E, T308K, T313M, Q315K, N335S, N434T, K457R, E462A, K464E; gp41: S42G, H53Q, K56R, V101A, I187V, F206L, N251S, F255W, F263C, I281S, A328G; nef: S8R, Y81F; p17: L75I, Y79F; rev: T14A, V16I, I18A, K20R, T62S, Q74E, D99E; tat: S46V, H60R, S62N, N64S; vif: R37G, D61E, E63K"}}, "children": [{"name": "KU168270", "node_attrs": {"div": 0.13710999999999998, "accession": "KU168270", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "x"}, "date": {"value": 2003.0}, "Strain_name": {"value": "LA15PoCa"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A14G", "G50A", "G121A", "A214G", "-305T", "C426A", "G518A", "G579A", "A604G", "T614G", "G620A", "G629A", "C713A", "A714G", "T722C", "A776G", "A833T", "C845T", "C902T", "A978G", "A1074G", "C1091T", "C1136T", "G1192A", "T1325C", "G1350A", "A1442G", "A1733G", "-1746C", "-1754A", "G1757-", "G1766A", "A1784G", "T1792C", "A1904C", "A1906G", "G1907A", "A1908G", "G1936C", "C1970G", "A1981C", "C1987G", "G1999A", "T2043C", "T2066A", "A2128G", "G2173A", "A2182G", "A2221G", "A2293G", "G2294A", "A2304G", "A2341G", "T2347A", "A2371G", "T2393A", "A2404C", "C2453T", "A2461G", "C2464T", "T2499C", "C2564G", "A2579T", "A2602G", "C2737T", "A2738T", "C2739A", "A2750C", "G2794A", "A2875G", "A2920G", "A2969G", "G2980A", "T2983G", "T3096C", "A3138C", "C3201T", "T3224A", "A3295G", "G3316A", "A3493G", "A3535G", "A3697T", "G3806C", "G3816A", "G3825A", "G3836T", "C3843T", "G3925A", "C4021T", "T4117C", "A4130C", "G4131C", "C4132G", "A4175G", "A4178G", "G4195A", "G4225T", "G4516A", "A4519G", "G4677A", "C4728A", "G4838A", "A4860G", "A4871G", "T4912C", "G4913T", "C4965T", "G5059A", "C5061T", "G5161A", "A5246C", "C5248A", "G5359A", "G5361A", "A5421G", "T5454C", "T5490C", "T5491C", "T5653G", "T5654C", "A5702G", "C5704T", "G5712A", "A5717G", "A5742G", "A5748T", "A5784G", "-5791G", "-5792A", "-5793G", "-5797T", "-5799G", "T5836A", "A5845T", "T5860C", "-5861T", "T5923C", "G5972A", "C5998T", "T6046C", "A6065G", "G6079A", "A6132T", "T6169A", "A6177T", "A6179-", "C6187A", "A6188G", "-6193C", "-6198C", "-6199T", "-6200G", "C6202A", "-6203G", "-6205C", "-6208C", "-6209A", "-6210T", "-6211A", "-6212G", "-6213T", "-6214G", "-6215A", "-6216A", "-6217T", "-6218G", "-6219A", "-6220A", "-6221A", "-6222T", "-6223A", "-6225G", "A6230G", "C6238T", "A6251G", "C6256T", "G6267T", "A6273G", "A6278C", "G6329A", "A6330G", "A6333C", "T6334A", "G6336C", "A6338G", "G6339A", "T6340G", "T6365A", "G6371A", "T6393C", "A6394C", "A6395T", "T6436G", "G6457T", "C6496T", "A6535G", "G6578A", "A6582G", "G6611A", "A6628G", "A6668G", "A6669G", "C6673G", "A6675C", "T6676A", "A6677C", "C6678A", "G6681A", "A6683C", "A6685G", "G6687T", "-6688A", "A6689C", "T6690G", "A6691C", "C6692A", "G6693T", "-6697G", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6714G", "T6722C", "T6724C", "C6726T", "C6729A", "A6730T", "G6731A", "T6733A", "A6734G", "T6735A", "A6744G", "A6748G", "A6776G", "A6785G", "A6789G", "C6790A", "A6799C", "G6819A", "A6821G", "T6828-", "T6829-", "A6840G", "A6843G", "C6844T", "A6848T", "C6895T", "A6934T", "G6935A", "-6957T", "-6963G", "-6964A", "-6968T", "-6972C", "A6974-", "-6980G", "-6981A", "-6983A", "A6990G", "-6997T", "A7000-", "C7006G", "C7019T", "A7065G", "A7089C", "C7127T", "T7150C", "A7153G", "T7162C", "A7163G", "C7164G", "C7165T", "-7168G", "-7169G", "C7170T", "C7182T", "G7190A", "G7195A", "A7219G", "A7234G", "A7504T", "A7507G", "A7590G", "T7603C", "T7605G", "G7628A", "G7633T", "C7658G", "A7672G", "A7677G", "C7701A", "G7717A", "G7720A", "C7747T", "A7756G", "T7796A", "A7936C", "C7940A", "G7965A", "G7980A", "A7992G", "T8094C", "G8173A", "A8184G", "G8194A", "A8195C", "A8196T", "G8267A", "C8268T", "A8271G", "A8281C", "G8317A", "A8351G", "T8366G", "T8400A", "C8413G", "T8461G", "-8492T", "A8531C", "G8534A", "G8558A", "G8561A", "A8564C", "C8684T", "T8701A", "A8739G", "C8756T", "A8846G", "T8847G", "A8859T", "G8861T", "T8864C", "A8873G", "G8875A", "G8902C", "A8918G", "C8951T", "C9039T", "A9099G"], "INT": ["E11Q", "R14K", "S17N", "A21S", "A23V", "M50I", "S119P", "N134D", "I135V"], "RT-p51": ["D67N", "K70R", "L100I", "K103N", "I135T", "P157A", "S162C", "T215Y", "K219Q", "I292V", "L334P", "N348T", "A369V", "L377M"], "RT-p66": ["D67N", "K70R", "L100I", "K103N", "I135T", "P157A", "S162C", "T215Y", "K219Q", "I292V", "L334P", "N348T", "A369V", "L377M"], "gp120": ["T3S", "V40I", "P57L", "N71G", "K93M", "D105E", "-109S", "-112G", "-116T", "-117N", "-118H", "-119S", "-120I", "-121V", "-122E", "-123I", "-124G", "I126V", "I133V", "R138I", "K140R", "K142Q", "S160T", "S171T", "V173I", "V180A", "T181S", "R201N", "E241G", "V242I", "K243R", "A253T", "N272G", "N273K", "N274-", "R276Q", "S278Q", "-282M", "-283H", "Q287R", "Y290H", "A291V", "T292N", "G293K", "D294E", "D297G", "I298M", "K308E", "E309K", "N311G", "N312R", "K315N", "R322E", "K323E", "F325Y", "K329R", "T330S", "I332F", "G361S", "-368I", "N369K", "-370R", "-371N", "-372Y", "S373T", "-374E", "-375T", "-376N", "-377S", "N378T", "T380N", "P389S", "R397N", "Q404R", "Q412P", "-433K", "T436D", "N437G", "T439V", "T443I", "D446N", "M447I"], "gp41": ["N96S", "A101S", "D109N", "E110D", "N125S", "T133N", "D163G", "S165T", "H213N", "G221E", "G226D", "D230G", "I264T", "Q294R", "N298L", "A322I", "H323R", "L326F"], "nef": ["L20I", "F40C", "I43V", "Q50H", "E63D", "F120Y", "I133V", "I168M", "C169G", "M173F", "R178K", "S187T"], "p17": ["L31M", "M61I", "V82I", "Q90R", "D93E", "N126S"], "p24": ["I15M", "L83V", "I115V", "R154K", "A207T"], "p6": ["L38S"], "pro": ["I36L", "D37S", "M46I", "Q58E", "E61D", "V63M", "V82A", "L90M"], "rev": ["K30Q", "P31Q", "K32Q", "V109I", "E116T"], "tat": ["R29K", "Q76P", "E86K"], "vif": ["V31I", "H48N", "K92E", "M109T", "H127Y", "R158K", "T159S", "C192Y"], "vpr": ["M19I", "N48Q", "R85Q", "G86R"], "vpu": ["S3T", "F16A", "K32R", "K37R", "R47S", "Q66K", "W77R", "N80Y"]}, "labels": {"aa": "INT: E11Q, R14K, S17N, A21S, A23V, M50I, S119P, N134D, I135V; RT-p51: D67N, K70R, L100I, K103N, I135T, P157A, S162C, T215Y, K219Q, I292V, L334P, N348T, A369V, L377M; RT-p66: D67N, K70R, L100I, K103N, I135T, P157A, S162C, T215Y, K219Q, I292V, L334P, N348T, A369V, L377M; gp120: T3S, V40I, P57L, N71G, K93M, D105E, -109S, -112G, -116T, -117N, -118H, -119S, -120I, -121V, -122E, -123I, -124G, I126V, I133V, R138I, K140R, K142Q, S160T, S171T, V173I, V180A, T181S, R201N, E241G, V242I, K243R, A253T, N272G, N273K, N274-, R276Q, S278Q, -282M, -283H, Q287R, Y290H, A291V, T292N, G293K, D294E, D297G, I298M, K308E, E309K, N311G, N312R, K315N, R322E, K323E, F325Y, K329R, T330S, I332F, G361S, -368I, N369K, -370R, -371N, -372Y, S373T, -374E, -375T, -376N, -377S, N378T, T380N, P389S, R397N, Q404R, Q412P, -433K, T436D, N437G, T439V, T443I, D446N, M447I; gp41: N96S, A101S, D109N, E110D, N125S, T133N, D163G, S165T, H213N, G221E, G226D, D230G, I264T, Q294R, N298L, A322I, H323R, L326F; nef: L20I, F40C, I43V, Q50H, E63D, F120Y, I133V, I168M, C169G, M173F, R178K, S187T; p17: L31M, M61I, V82I, Q90R, D93E, N126S; p24: I15M, L83V, I115V, R154K, A207T; p6: L38S; pro: I36L, D37S, M46I, Q58E, E61D, V63M, V82A, L90M; rev: K30Q, P31Q, K32Q, V109I, E116T; tat: R29K, Q76P, E86K; vif: V31I, H48N, K92E, M109T, H127Y, R158K, T159S, C192Y; vpr: M19I, N48Q, R85Q, G86R; vpu: S3T, F16A, K32R, K37R, R47S, Q66K, W77R, N80Y"}}}, {"name": "AY371149", "node_attrs": {"div": 0.13638999999999998, "accession": "AY371149", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_0186ND"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G365C", "G378T", "G428A", "A461C", "T473C", "A516C", "G519A", "A520G", "G541A", "G562A", "C605A", "G608A", "G671A", "G687T", "A705G", "C734T", "C788A", "A839G", "A980G", "A1028G", "T1058C", "C1091A", "A1115G", "G1301A", "C1304T", "G1313A", "T1335C", "C1385T", "C1449A", "A1476G", "G1488A", "G1489A", "C1535T", "A1587C", "C1616A", "T1628A", "G1657A", "G1664A", "-1746T", "T1791G", "A1794G", "G1841A", "T1888C", "G1978A", "A1985G", "C1987T", "G2027A", "T2035C", "C2047T", "A2075C", "T2083C", "T2087C", "A2108G", "A2241G", "C2356T", "A2407G", "A2455G", "G2459A", "G2470A", "G2530A", "T2608C", "T2689C", "A2788G", "C2910A", "G2926A", "A2937G", "G3010A", "T3022C", "A3205T", "G3221T", "T3225C", "G3226A", "C3252T", "T3256C", "C3352T", "G3438A", "A3456G", "G3463A", "G3484A", "C3504A", "A3592T", "G3604A", "T3755A", "C3756G", "G3772A", "T3799C", "A3880G", "T3909A", "T4075C", "A4108G", "T4177C", "T4216C", "T4247C", "G4264A", "G4459A", "G4553A", "A4580C", "C4650A", "A4694G", "G4727A", "A4751T", "C4757T", "T4776A", "C4786T", "A4788G", "A4937C", "A5055C", "A5065G", "G5170A", "T5197G", "G5212A", "T5224G", "A5227G", "C5234A", "A5235C", "C5242T", "G5296A", "C5351T", "G5382T", "G5415A", "A5421C", "T5424C", "G5427A", "C5446A", "G5448C", "A5462G", "A5480C", "A5481C", "A5483G", "A5493G", "G5531A", "A5538G", "T5551G", "A5581G", "A5614G", "C5615G", "G5626C", "A5628T", "C5663T", "G5668A", "G5699A", "T5739G", "G5747A", "A5781G", "C5787T", "G5794-", "A5795-", "A5796-", "T5798-", "C5801G", "A5802G", "A5803G", "A5805G", "C5806T", "T5808G", "-5809G", "-5810C", "-5811A", "T5841C", "T5860-", "C5862-", "C5884T", "G5902A", "C6004T", "T6024G", "C6026T", "A6076C", "C6097T", "C6115T", "A6130G", "A6157G", "C6165T", "T6169C", "A6174G", "A6177G", "-6180C", "-6181T", "A6182G", "T6184A", "A6185G", "A6186T", "C6189A", "-6193G", "G6195C", "-6198A", "-6199C", "-6200T", "G6201C", "-6203T", "-6205G", "-6208A", "G6224-", "A6226T", "G6274A", "A6275C", "G6277A", "A6295G", "G6303A", "T6322G", "A6326G", "T6337C", "T6355C", "C6370A", "G6451A", "A6456G", "G6466A", "C6469T", "C6545T", "T6551C", "C6563T", "G6573A", "G6575A", "A6581C", "T6592C", "A6594C", "C6618A", "C6632T", "T6652C", "A6664G", "A6684G", "-6688T", "C6752A", "A6773G", "A6775G", "A6781T", "A6787G", "T6794C", "C6807T", "-6830A", "-6831A", "-6832G", "-6833A", "A6836C", "A6837T", "C6838T", "A6841C", "T6849C", "-6957G", "A6960G", "A6962G", "-6963A", "-6964G", "-6968G", "A6969G", "-6972A", "-6973T", "-6975T", "-6976T", "-6977G", "-6978G", "-6980A", "-6981T", "-6983T", "A6986C", "T6988A", "A6989C", "C6991A", "A6994C", "A6996C", "-6997A", "-6998C", "-6999G", "G7026A", "A7043C", "A7089G", "A7107T", "C7108G", "C7124A", "A7152C", "C7155A", "C7156T", "A7157C", "G7160A", "A7161C", "-7168T", "-7169A", "A7275G", "G7309A", "A7312G", "G7343A", "G7366A", "T7447C", "A7453T", "C7498T", "G7552A", "A7604G", "T7605C", "C7688T", "A7690C", "G7726A", "G7790A", "A7818G", "A7891G", "A7936G", "A7938G", "A7943G", "A7947G", "G7962A", "A7996C", "C8089T", "C8095A", "C8106T", "G8116A", "A8264G", "G8276A", "C8277T", "A8364C", "T8371C", "T8374A", "A8388G", "A8396G", "G8398A", "C8413T", "G8469A", "T8480C", "G8487T", "-8492G", "T8495G", "C8503A", "G8534C", "A8540G", "T8568C", "C8661A", "C8688A"], "INT": ["L45Q", "V260I"], "RT-p51": ["I5V", "K49R", "E122K", "P272Q", "K281R", "E370D", "A376S", "L377S", "T386I"], "RT-p66": ["I5V", "K49R", "E122K", "P272Q", "K281R", "E370D", "A376S", "L377S", "T386I", "R448K", "K454R", "T470N"], "gp120": ["T3D", "D4N", "N5-", "P57R", "N71S", "E74D", "T104I", "N107S", "-109K", "-112S", "S114L", "-116P", "K141Q", "R150K", "I156M", "N157D", "E162N", "G240E", "E241R", "K243Q", "E247A", "T255N", "L260F", "K277R", "G293D", "D294I", "Q300K", "K307E", "E309N", "N311R", "A318V", "R322G", "-326K", "-327N", "N328L", "K329N", "T330N", "I332T", "-368S", "-370G", "-371T", "-372D", "-383S", "-384D", "R391K", "R397H", "Q412R", "D418V", "L424I", "N432R", "-433D", "T436H", "N437T", "E438T", "T439D", "K474R"], "gp41": ["A14T", "E119Q", "Q129Y", "D163S", "K172R", "N212S", "K214E", "E215G", "G220E", "R231S", "A268V", "I321V", "A325I"], "nef": ["I10T", "V11E", "I16V", "R19K", "A49S", "A54D", "E64D", "Q107K", "H116N"], "p1": ["S9N"], "p17": ["A15S", "E42D", "M61L", "E62R", "G69E", "R76K", "A118S", "N124D"], "p2": ["T8Q", "-10T", "-11N"], "p24": ["L83M"], "p6": ["P23S", "L38V", "T39A"], "p7": ["S4G", "G8N", "K41Q"], "pro": ["V15I", "V77I", "I93L"], "rev": ["G6R", "N8S", "K30E", "K32R", "N50H", "L83I", "G90R"], "tat": ["E2D", "Q24N", "Q35P", "Y36C", "R52Q", "S59A", "I69V", "Q76R", "T77A", "K80E", "E85K"], "vif": ["H22N", "L64I", "T67I", "T68A", "E117D", "T157P", "T159P", "K160R"], "vpr": ["H40Q", "Q44T", "A93S"], "vpu": ["S3G", "V7L", "A19V", "V21I", "R31K", "D44E", "R47K", "E62G", "Q66L"]}, "labels": {"aa": "INT: L45Q, V260I; RT-p51: I5V, K49R, E122K, P272Q, K281R, E370D, A376S, L377S, T386I; RT-p66: I5V, K49R, E122K, P272Q, K281R, E370D, A376S, L377S, T386I, R448K, K454R, T470N; gp120: T3D, D4N, N5-, P57R, N71S, E74D, T104I, N107S, -109K, -112S, S114L, -116P, K141Q, R150K, I156M, N157D, E162N, G240E, E241R, K243Q, E247A, T255N, L260F, K277R, G293D, D294I, Q300K, K307E, E309N, N311R, A318V, R322G, -326K, -327N, N328L, K329N, T330N, I332T, -368S, -370G, -371T, -372D, -383S, -384D, R391K, R397H, Q412R, D418V, L424I, N432R, -433D, T436H, N437T, E438T, T439D, K474R; gp41: A14T, E119Q, Q129Y, D163S, K172R, N212S, K214E, E215G, G220E, R231S, A268V, I321V, A325I; nef: I10T, V11E, I16V, R19K, A49S, A54D, E64D, Q107K, H116N; p1: S9N; p17: A15S, E42D, M61L, E62R, G69E, R76K, A118S, N124D; p2: T8Q, -10T, -11N; p24: L83M; p6: P23S, L38V, T39A; p7: S4G, G8N, K41Q; pro: V15I, V77I, I93L; rev: G6R, N8S, K30E, K32R, N50H, L83I, G90R; tat: E2D, Q24N, Q35P, Y36C, R52Q, S59A, I69V, Q76R, T77A, K80E, E85K; vif: H22N, L64I, T67I, T68A, E117D, T157P, T159P, K160R; vpr: H40Q, Q44T, A93S; vpu: S3G, V7L, A19V, V21I, R31K, D44E, R47K, E62G, Q66L"}}}]}]}]}, {"name": "CRF11_cpx_NODE_0000014", "node_attrs": {"div": 0.09021999999999998, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C496G", "G1760A", "T1791C", "T1986C", "G2059A", "A2683G", "A2704G", "A2710G", "G2727A", "G2728A", "G3607A", "G3769A", "T3853C", "C4123T", "C4426T", "A4772T", "T4932G", "A4993C", "-5791G", "-5792A", "-5797T", "-5799G", "A5907G", "T6187-", "A6188-", "C6370T", "A6456G", "-6976T", "-6979A", "A7240G", "A7759G", "A8264G", "-8492G", "T8789C", "G8795A"], "RT-p51": ["R211K"], "RT-p66": ["R211K"], "gp120": ["D4E", "K18R", "I153V", "-370N"], "gp41": ["I321V"], "p17": ["A54G"], "p24": ["G183N"], "tat": ["R29K", "H60R"], "vif": ["S116A"]}, "labels": {"aa": "RT-p51: R211K; RT-p66: R211K; gp120: D4E, K18R, I153V, -370N; gp41: I321V; p17: A54G; p24: G183N; tat: R29K, H60R; vif: S116A"}}, "children": [{"name": "CRF11_cpx_NODE_0000015", "node_attrs": {"div": 0.09302999999999997, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A286G", "A520G", "A998G", "T1004C", "G1101A", "A1993G", "G2027A", "C4650A", "C5478T", "A5717G", "-5793G", "-6181C", "G6232A", "G6267A", "A6329G", "G6605A", "A6776G", "A6781C", "C6787T", "A6797C", "G6819A", "G6826C", "T6860C", "-6966C", "-6972G", "-6978A", "C7658G", "A7992G", "A8263G", "A8458G", "C8756T", "T8864G", "G8945C"], "gp120": ["-107R", "R138K", "D251N", "T308A", "E309D", "K324-", "-371T", "-374D", "E381-", "N383-"], "gp41": ["D113N", "D230G"], "nef": ["K39R", "D174E", "E201D"], "p17": ["E62G"], "p24": ["V124I"], "pro": ["V77I"], "vif": ["H22N"], "vpu": ["K37R"]}, "labels": {"aa": "gp120: -107R, R138K, D251N, T308A, E309D, K324-, -371T, -374D, E381-, N383-; gp41: D113N, D230G; nef: K39R, D174E, E201D; p17: E62G; p24: V124I; pro: V77I; vif: H22N; vpu: K37R"}}, "children": [{"name": "KP718938", "node_attrs": {"div": 0.13962999999999998, "accession": "KP718938", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2004.0}, "Strain_name": {"value": "1230_24"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T13-", "A14-", "G15-", "A16-", "C17-", 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"S4G", "K10R"], "pro": ["T12K", "L19M", "K20R", "R57K", "V63P", "M89I"], "rev": ["I18V", "Q24R", "N50D", "S56G", "I59V", "T62A", "Q74E", "P77Q", "L83I", "D99S", "S100P", "G104V", "S106P", "V109I", "R113G"], "tat": ["K29N", "Y36C", "S46Y", "S59P", "R60Y", "N64S", "P70Q", "T78K", "R79G"], "vif": ["H27Y", "R37K", "I51T", "E117D", "Q136S", "R167K"], "vpr": ["E25D", "H28N", "N48E", "I61V", "Q77H"], "vpu": ["P3S", "Q5K", "A19V", "V21I", "L33V", "R41S", "Q66K", "N80H"]}, "labels": {"aa": "INT: I60T, Q95H, E96D, N134D, V201I, I203M, R269K, D288N; RT-p51: K32R, E40D, K43N, K49R, V118I, E138A, S162A, F214L, P243T, V276T, K277R, A297E, L310I, D324E, A376T, R395K; RT-p66: K32R, E40D, K43N, K49R, V118I, S123N, E138A, S162A, F214L, P243T, V276T, K277R, A297E, L310I, D324E, A376T, R395K, L517I, S519N, S534A; gp120: P57F, D85E, V92I, V106I, R107K, -109N, T110S, -111N, -112T, -113A, -114S, -115S, -116P, -117V, K127T, K140R, K142R, K143E, R150K, V153I, P155S, I156L, N159D, S160T, S162K, P186L, R243K, F249I, A253I, T255N, S262E, R265K, N267T, T269V, A288T, A291T, T292D, G293A, D294I, A308E, N312R, Q315H, K319S, Q320K, R322K, -323G, -324I, F325L, -327N, N328K, K329T, N334A, N335G, S336P, G351R, G361Q, -368D, -372T, -373W, -375N, -376N, -377T, N378T, N379Q, T380N, -381N, -382S, -383S, -384K, T385N, R391K, R416K, D418E, L425I, R428T, -433S, N434T, T436E, N437T, E438V, T439-, F440-, T443A; gp41: I4L, A6T, V7L, A14T, H53Q, A71T, V101A, D109E, E110D, E123G, D125S, T130I, T133E, K154Q, S157D, D163S, K172R, K214R, S239N, F255W, V267A, I270T, I281A, G286W, S302R, L304F, N305D, V321A, A322-, Q323-, R324-, L326H, A328V, I329G, L330R, H331A, I332A, P333H, R335A, I336F, E341-; nef: R22Q, P25S, E28A, G29E, A33V, K35R, I43V, A49V, T51N, F89Y, I133V, F143Y, M173V, F185Y; p1: K4R, I5L, S9N; p17: D14E, A15E, K26N, P66S, L85I, R91G, A119E, S125N; p2: V7I; p24: A14N, E79D, L83T, G120S, T171I, T178S, E180D, V191I, A207T; p6: F17L, E19K, S24P, P25N, -26Q, K27E, Q28A, P30K, K31E, E32-, K33-, L50*, S51L, Q52K; p7: R3G, S4G, K10R; pro: T12K, L19M, K20R, R57K, V63P, M89I; rev: I18V, Q24R, N50D, S56G, I59V, T62A, Q74E, P77Q, L83I, D99S, S100P, G104V, S106P, V109I, R113G; tat: K29N, Y36C, S46Y, S59P, R60Y, N64S, P70Q, T78K, R79G; vif: H27Y, R37K, I51T, E117D, Q136S, R167K; vpr: E25D, H28N, N48E, I61V, Q77H; vpu: P3S, Q5K, A19V, V21I, L33V, R41S, Q66K, N80H"}}}, {"name": "CRF11_cpx_NODE_0000016", "node_attrs": {"div": 0.09597999999999997, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-305A", "A2951G", "A4695G", "A4737G", "G4773A", "C5551T", "A6174G", "A6311G", "A6333G", "A6368G", "T6385C", "A6648G", "C6861A", "C6895T", "A6937C", "A6985-", "A6989G", "-6999C", "G7044A", "A7097C", "T7622A", "A7942G", "G8354C", "A8400T", "A8531T", "C8688A", "C8699A", "T8887G"], "RT-p51": ["N123S", "T286A"], "RT-p66": ["T286A"], "gp120": ["T172A", "R397N", "I415L"], "gp41": ["S107T"], "nef": ["K4N", "I20L", "H116N", "M182R"], "rev": ["T14A", "C107S"], "vif": ["R37G", "I51V"]}, "labels": {"aa": "RT-p51: N123S, T286A; RT-p66: T286A; gp120: T172A, R397N, I415L; gp41: S107T; nef: K4N, I20L, H116N, M182R; rev: T14A, C107S; vif: R37G, I51V"}}, "children": [{"name": "AF179368", "node_attrs": {"div": 0.13577999999999996, "accession": "AF179368", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "GR"}, "Strain_name": {"value": "GR17"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C233T", "A263G", "A419G", "G428A", "C507A", "A562G", "A585G", "A604T", "A645G", "C672A", "A675-", "A676-", "G677-", "A678-", "A679-", "A680-", "A699T", "C734T", "A743G", "A776G", "T788C", "G810A", "C830T", "A978G", "A1002G", "T1003C", "A1022G", "A1056G", "C1060A", "A1070G", "G1109A", "C1136T", "A1192G", "T1229C", "G1232A", "C1247T", "G1256A", "A1263T", "A1277G", "C1351T", "T1362C", "G1394A", "G1404A", "T1444C", "A1476G", "C1511T", "C1535T", "G1562A", "G1577A", "G1589A", "T1679C", "C1682A", "A1733G", "T1741C", "G1743A", "G1769C", 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"G8487A", "C8488G", "A8489C", "C8494A", "G8516A", "G8534A", "A8536G", "G8604A", "C8684T", "T8685C", "A8717G", "C8720T", "T8770A", "G8804A", "A8846G", "T8847A", "G8861A", "A8873T", "G8888A", "C8966T", "G8968A", "C9039T", "T9051A", "T9171A", "T9172A", "A9174C", "G9175C", "T9176G", "G9177A", "C9178A"], "INT": ["Q9P", "E11G", "I31V", "V32I", "S39N", "G59R", "A124N", "N134G", "E157G", "K160E", "R187G", "V201I", "N222K", "V249I", "R284S"], "RT-p51": ["I5V", "V90I", "P119L", "I135L", "I178V", "P272A", "T369A", "S379G", "T386I", "R395K"], "RT-p66": ["I5V", "V90I", "P119L", "I135L", "I178V", "P272A", "T369A", "S379G", "T386I", "R395K", "I452L", "D460N", "V467I", "L469P", "T470I", "Q487K"], "gp120": ["T3-", "N5K", "L6M", "T23I", "K31R", "A32T", "A45S", "Q54R", "I56L", "P57S", "I80V", "T100A", "V106A", "-109A", "-111D", "E125-", "S130T", "I137L", "K138E", "K143N", "Y145R", "N157-", "N159D", "N161S", "P178S", "F249L", "S278G", "R299K", "K307R", "K319E", "R322H", "-323N", "-324N", "I332V", "N335E", "S336H", "I343V", "-368Y", "N369A", "N370S", "-372Q", "-373N", "-375M", "-376Q", "-377S", "N379-", "T380-", "-384D", "V396I", "M406V", "N432E", "-433G", "N435D", "N437I", "D449N", "R472K"], "gp41": ["S42N", "A50V", "D109N", "N113E", "M115E", "E119K", "L135I", "K172R", "T208A", "N212S", "K214Q", "A216P", "I222T", "E223K", "R233S", "S256L", "R259Q", "I281S", "N298S", "Q323H", "H331N", "L340F"], "nef": ["A49S", "T51N", "E63D", "E65G", "G88S", "Y115H", "F143Y", "I168M", "C169S", "M173I", "E177D"], "p17": ["Q58K", "K76R", "T84A", "Q90L", "I104V", "Q113K", "K114-", "K115-", "T122S"], "p2": ["V7A"], "p24": ["I15M", "V27I", "L83V", "I91A", "S109G", "T110N", "K154R", "T178S", "A207V", "G225S"], "p6": ["I21T", "A22T", "L38I"], "p7": ["S4G", "W37*"], "pro": ["L10V", "T12P", "I13V", "I36M", "D37S", "R57K", "E61D", "V63T"], "rev": ["E10A", "V16A", "N26S", "K32A", "S34T", "R41Q", "I52L", "D53H", "Q74P", "D99E"], "tat": ["V4G", "P6I", "E9D", "K29R", "Y36H", "R52W", "T77A", "T78S", "K80N", "S87P"], "vif": ["D14A", "G60E", "D61E", "A62D", "E63M", "L91R", "G101E", "Q136P", "H139R", "T157K", "A170T", "H183R", "S186N", "M189V"], "vpr": ["N16S", "S94R", "P96Y"], "vpu": ["P3T", "Q5R", "I6T", "I17L", "V20I", "V21I", "V26A", "K32R", "Q36H", "I39-", "I43-", "D44R", "R45I", "I46-", "R47-", "E48-", "R49-"]}, "labels": {"aa": "INT: Q9P, E11G, I31V, V32I, S39N, G59R, A124N, N134G, E157G, K160E, R187G, V201I, N222K, V249I, R284S; RT-p51: I5V, V90I, P119L, I135L, I178V, P272A, T369A, S379G, T386I, R395K; RT-p66: I5V, V90I, P119L, I135L, I178V, P272A, T369A, S379G, T386I, R395K, I452L, D460N, V467I, L469P, T470I, Q487K; gp120: T3-, N5K, L6M, T23I, K31R, A32T, A45S, Q54R, I56L, P57S, I80V, T100A, V106A, -109A, -111D, E125-, S130T, I137L, K138E, K143N, Y145R, N157-, N159D, N161S, P178S, F249L, S278G, R299K, K307R, K319E, R322H, -323N, -324N, I332V, N335E, S336H, I343V, -368Y, N369A, N370S, -372Q, -373N, -375M, -376Q, -377S, N379-, T380-, -384D, V396I, M406V, N432E, -433G, N435D, N437I, D449N, R472K; gp41: S42N, A50V, D109N, N113E, M115E, E119K, L135I, K172R, T208A, N212S, K214Q, A216P, I222T, E223K, R233S, S256L, R259Q, I281S, N298S, Q323H, H331N, L340F; nef: A49S, T51N, E63D, E65G, G88S, Y115H, F143Y, I168M, C169S, M173I, E177D; p17: Q58K, K76R, T84A, Q90L, I104V, Q113K, K114-, K115-, T122S; p2: V7A; p24: I15M, V27I, L83V, I91A, S109G, T110N, K154R, T178S, A207V, G225S; p6: I21T, A22T, L38I; p7: S4G, W37*; pro: L10V, T12P, I13V, I36M, D37S, R57K, E61D, V63T; rev: E10A, V16A, N26S, K32A, S34T, R41Q, I52L, D53H, Q74P, D99E; tat: V4G, P6I, E9D, K29R, Y36H, R52W, T77A, T78S, K80N, S87P; vif: D14A, G60E, D61E, A62D, E63M, L91R, G101E, Q136P, H139R, T157K, A170T, H183R, S186N, M189V; vpr: N16S, S94R, P96Y; vpu: P3T, Q5R, I6T, I17L, V20I, V21I, V26A, K32R, Q36H, I39-, I43-, D44R, R45I, I46-, R47-, E48-, R49-"}}}, {"name": "CRF11_cpx_NODE_0000017", "node_attrs": {"div": 0.10844999999999996, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A398G", "G496A", "T596C", "A606C", "A705G", "A712G", "G716A", "A978C", "G1019A", "T1235C", "C1238T", "G1313A", "T1325C", "T1329A", "T1451G", "T1676C", "G1687A", "C1986T", "A2293G", "G2422A", "T2569C", "A2627T", "C2653T", "C2885T", "A3043G", "G3403A", "A3449G", "G3553A", "T3559C", "T3566C", "G3599T", "C3600G", "A3601T", "T3602C", "A3607G", "G3685A", "A3907G", "G3925A", "T4039G", "G4131C", "G4175A", "T4397A", "T4702G", "C4724T", "T4772A", "A4871T", "C4919T", "A4956T", "C4993A", "A5065G", "T5182G", "C5342T", "A5426G", "A5499G", "G5599T", "T5600A", "G5644A", "C5663T", "A6066G", "G6128A", "A6185-", "-6205G", "-6207G", "-6208A", "-6209A", "-6211G", "-6222A", "-6223A", "-6225C", "G6464A", "A6488C", "A6635G", "C6673T", "-6686A", "-6687G", "-6688T", "-6689A", "-6690T", "-6691A", "G6693A", "C6790A", "A6791G", "C6800A", "A6823G", "A6825C", "-6833A", "-6835C", "A6837-", "C6838-", "A6855C", "T6875A", "G6905A", "T6916C", "T6932A", "T6952G", "T6958-", "-6968G", "-6969G", "-6973A", "-6977G", 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S360T, D374N, P389Q, R391K, T443A; gp41: L9F, V101N, A245I, R276H, A325V, L330I; nef: H40F, G83A, I133T; p17: N124D, N126S; p6: S3N; rev: C63Y; tat: Q17R; vif: L39W, E63K, R95S, I124L, K160R; vpu: A19V"}}, "children": [{"name": "KP718934", "node_attrs": {"div": 0.14389999999999997, "accession": "KP718934", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "A1575"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G123A", "-152T", "A157G", "C160T", "A214G", "G216T", "G378A", "A480G", "A496C", "T506C", "C531T", "T572C", "C603A", "G667A", "A806G", "C845T", "C964G", "A1017C", "T1058C", "T1121C", "G1139A", "G1184A", "A1242G", "C1295T", "A1327G", "A1329G", "G1404A", "A1442G", "A1452G", "A1461G", "A1486G", "C1514T", "A1630G", "T1631G", "A1642G", "T1653C", "G1661A", "C1692A", "G1775-", "A1776-", "A1777-", "G1819A", "C1826A", "A1840G", "G1846A", "G1859A", "A1861G", "G1862C", "A1927G", "G1978T", "A1985G", "A1988C", "G1999A", "G2002A", "G2023A", "A2059G", "A2075C", "T2087C", "A2182G", "G2459A", "A2462G", "C2467T", "C2540T", "A2593G", "G2704A", "A2727C", "T2735C", "A2767G", "T2770C", "C2822A", "T2824C", "G2872A", "G2914A", "A2932G", "A3079G", "A3088G", "T3132A", "C3133T", "A3135G", "A3136G", "G3151A", "A3229G", "A3249G", "T3310C", "G3340A", "C3376T", "C3405T", "G3494A", "T3567C", "G3651A", "C3751T", "G3787A", "G3796A", "C3829T", "G3836A", "A3910G", "A3953G", "A4027G", "A4045C", "T4117C", "A4189G", "G4276A", "A4378G", "A4403G", "A4552G", "A4625G", "A4632C", "G4637A", "G4677A", "T4730C", "A4774G", "G4784A", "C4786G", "A4790G", "G4802A", "G4856A", "A4861G", "A4863G", "T4910C", "T4976C", "T4991C", "A5049C", "C5056A", "G5059A", "A5061G", "A5089G", "A5090G", "T5091A", "G5099A", "T5162C", "G5215A", "C5237T", "C5306T", "T5339C", "G5382A", "T5467A", "T5482A", "A5483G", "C5556A", "A5581G", "C5584T", "C5602T", "-5603A", "T5627C", "T5657G", "G5718A", "T5739G", "A5781G", "A5866C", "T5923G", "C5974T", "A5983C", "A6015G", "C6023G", "G6028A", "C6083A", "G6174T", "G6175A", "-6180G", "-6204T", "-6206G", "-6210G", "-6220C", "-6221A", "A6249C", "A6251G", "A6268G", "A6281C", "T6287C", "T6331G", "A6376G", "C6397T", "G6403A", "A6455C", "G6456A", "G6463A", "A6465G", "G6490C", "A6574G", "G6582T", "G6593A", "T6599A", "A6605G", "G6611A", "C6618T", "C6637G", "G6639C", "A6684G", "G6743A", "T6745G", "T6766C", "A6799C", "A6800G", "A6820T", "-6837C", "-6838A", "A6840C", "C6843A", "A6854G", "C6860A", "A6861G", "G6871A", "A6936C", "-6956G", "-6957G", "-6958A", "-6961T", "-6963C", "-6964A", "-6970A", "-6971A", "G6972C", "-6975A", "A6978C", "-6980G", "-6982A", "-6983A", "-6984C", "-6985A", "G6989-", "A6990-", "A6992-", "C6993-", "A6996-", "C7024T", "A7096G", "C7097T", "C7127T", "G7147T", "A7152G", "T7153G", "C7156A", "-7165C", "G7166-", "A7167-", "C7170-", "C7171-", "A7177G", "G7197A", "G7237A", "G7270A", "A7273C", "T7462A", "C7596T", "C7597T", "T7609C", "T7618G", "A7620G", "G7628A", "G7633A", "C7651T", "A7655G", "T7675C", "A7676G", "C7688G", "A7690C", "C7692A", "A7694C", "C7699T", "C7701A", "G7705A", "G7712A", "A7744G", "G7773A", "C7792T", "G7831C", "T7852G", "T7921C", "C7935A", "A7936C", "A7937C", "A7944G", "C7950T", "A7953G", "C7954T", "A7955C", "A8014G", "C8031A", "A8076G", "G8079A", "G8087A", "A8088C", "C8095A", "C8131G", "A8132G", "A8152G", "G8168A", "C8182A", "T8287A", "G8330A", "C8331T", "A8378G", "G8469A", "G8492A", "G8520A", "C8521G", "A8522C", "A8524T", "G8526C", "A8527T", "G8528T", "G8529C", "A8530C", "T8531C", "G8532C", "G8534T", "G8535C", "A8536T", "G8537T", "G8538C", "A8540T", "G8542T", "C8543G", "T8544C", "T8551C", "A8564G", "A8584T", "G8604A", "A8666C", "C8669T", "G8738A", "A8750T", "C8775T", "T8786A", "A8837G", "A8892C", "C8913A", "T8972A", "G8991A", "C8992-", "C9017T", "C9018T", "G9026A", "T9072G"], "INT": ["A21T", "I60V", "I84M", "T210A", "R284G", "D286A", "D288N"], "RT-p51": ["E122K", "S123D", "K211T", "F214L", "P243T", "F346Y", "K347R", "K385R", "A437V"], "RT-p66": ["E122K", "S123D", "K211T", "F214L", "P243T", "F346Y", "K347R", "K385R", "A437V", "V467I", "L491P", "S519N"], "gp120": ["E4D", "Q54R", "P57V", "H77N", "R107I", "-109S", "-123K", "-124A", "N132T", "I133V", "K143Q", "Y145H", "N159E", "N161S", "R201Q", "K204R", "Q212H", "R243M", "E247K", "F249I", "N251D", "A253T", "T255I", "D261E", "S262T", "K277R", "D297K", "Q315H", "K316E", "R322-", "F325-", "T334A", "G361A", "-368G", "N370T", "-372N", "-373G", "N374T", "-375N", "-376A", "-377E", "N378T", "T380A", "-381N", "-384D", "N435R", "R448K"], "gp41": ["H53Q", "P98L", "N105K", "K106R", "D109N", "I118V", "Q129D", "T130K", "I131L", "T133N", "E137K", "S157N", "M176I", "P211H", "N212H", "K214R", "A216V", "D217G", "A243E", "H258R", "R259Q", "D262T", "H276Q", "R277G", "A289T", "A343I"], "nef": ["P24A", "A60S", "Q61L", "E62L", "E63P", "E64H", "E65L", "V66L", "G67V", "F68L", "V70A", "Y81F", "G88S", "E108D", "K184Q"], "p1": ["K4R", "S8P"], "p17": ["A15T", "S49G", "G54A", "P66S", "Q90N", "S111N"], "p2": ["T8Q", "N9Q", "-11A", "-12N", "I13V"], "p24": ["A78G", "M96L", "T171A", "K199R", "S200A", "G225S"], "p6": ["P5T", "K33-", "S47N"], "p7": ["K7R", "N55R"], "pro": ["L10I", "E21K", "A22P", "E60D", "I64L", "I93L"], "rev": ["A14K", "K30P", "K32E", "Q36S", "S56G", "S61R", "R80N", "L83I", "Q95G", "I102V", "S107Y", "P112T"], "tat": ["C31S", "Y36S", "R60Q", "I69V", "P70S", "Q76T", "T78R", "R79G", "P81S", "T82V"], "vif": ["M16L", "V31I", "K63R", "T67R", "K92R", "R93G", "T155P", "T157K", "R158K", "T159A", "K168R", "L169I"], "vpr": ["H45Y", "A93T"], "vpu": ["V7A", "I17S", "D44E"]}, "labels": {"aa": "INT: A21T, I60V, I84M, T210A, R284G, D286A, D288N; RT-p51: E122K, S123D, K211T, F214L, P243T, F346Y, K347R, K385R, A437V; RT-p66: E122K, S123D, K211T, F214L, P243T, F346Y, K347R, K385R, A437V, V467I, L491P, S519N; gp120: E4D, Q54R, P57V, H77N, R107I, -109S, -123K, -124A, N132T, I133V, K143Q, Y145H, N159E, N161S, R201Q, K204R, Q212H, R243M, E247K, F249I, N251D, A253T, T255I, D261E, S262T, K277R, D297K, Q315H, K316E, R322-, F325-, T334A, G361A, -368G, N370T, -372N, -373G, N374T, -375N, -376A, -377E, N378T, T380A, -381N, -384D, N435R, R448K; gp41: H53Q, P98L, N105K, K106R, D109N, I118V, Q129D, T130K, I131L, T133N, E137K, S157N, M176I, P211H, N212H, K214R, A216V, D217G, A243E, H258R, R259Q, D262T, H276Q, R277G, A289T, A343I; nef: P24A, A60S, Q61L, E62L, E63P, E64H, E65L, V66L, G67V, F68L, V70A, Y81F, G88S, E108D, K184Q; p1: K4R, S8P; p17: A15T, S49G, G54A, P66S, Q90N, S111N; p2: T8Q, N9Q, -11A, -12N, I13V; p24: A78G, M96L, T171A, K199R, S200A, G225S; p6: P5T, K33-, S47N; p7: K7R, N55R; pro: L10I, E21K, A22P, E60D, I64L, I93L; rev: A14K, K30P, K32E, Q36S, S56G, S61R, R80N, L83I, Q95G, I102V, S107Y, P112T; tat: C31S, Y36S, R60Q, I69V, P70S, Q76T, T78R, R79G, P81S, T82V; vif: M16L, V31I, K63R, T67R, K92R, R93G, T155P, T157K, R158K, T159A, K168R, L169I; vpr: H45Y, A93T; vpu: V7A, I17S, D44E"}}}, {"name": "AF492623", "node_attrs": {"div": 0.13234999999999997, "accession": "AF492623", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 1996.0}, "Strain_name": {"value": "96CM_4496"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C252T", "G286A", "C287T", "G354A", "A368G", "C379A", "A386G", "A412G", "A418G", "G428A", "A447G", "A497C", "A604G", "A611G", "A613G", "G614C", "G615A", "G620A", "A653G", "G709A", "A759C", "T760C", "G761A", "G762A", "A776G", "A779G", "T788C", "G810A", "C1004T", "C1137T", "A1192G", "A1279G", "G1302A", "G1562A", "C1616T", "T1628C", "G1778A", "C1791G", "A1794G", "A1906G", "G1912A", "A1969G", "G1993A", "T2017A", "G2065A", "C2211A", "A2215C", "C2415T", "A2463G", "A2524G", "C2533T", "T2581C", "C2615A", "G2662A", "A2665G", "A2727G", "A2919G", "C2927T", "A2929T", "G2984A", "A3037G", "A3061G", "C3067A", "T3121C", "G3221T", "C3223T", "C3224G", "C3252T", "G3427A", "T3445C", "A3524G", "T3526A", "G3631A", "C3763T", "C3779T", "A3866G", "A3876G", "T3943C", "C4181A", "T4291C", "A4293G", "A4391T", "T4426C", "T4537G", "A4694C", "T4938A", "A5055C", "A5061C", "T5147C", "T5160C", "C5214T", "A5233G", "T5294C", "G5330A", "G5359A", "C5397T", "A5444G", "C5469T", "T5478C", "A5480C", "A5545G", "A5555G", "T5568C", "-5603T", "T5612A", "A5613C", "C5614T", "C5620T", "A5622C", "A5664G", "G5683A", "G5817A", "C5851T", "A5861G", "A5867G", "T5887C", "A5906G", "G5907A", "T6024C", "A6030G", "T6101C", "-6180C", "C6181A", "-6206T", "-6210T", "-6212T", "-6213C", "-6214A", "-6215A", "-6216T", "-6217A", "-6218G", "-6219C", "-6220G", "C6256T", "G6280A", "A6288T", "C6289T", "A6320C", "A6326G", "A6327G", "G6329A", "G6336A", "T6373C", "A6461G", "A6565G", "A6576G", "C6598T", "A6628T", "T6655C", "A6682G", "A6709T", "G6742A", "C6781A", "A6809G", "A6810G", "A6819G", "A6821G", "-6830A", "-6831G", "-6832C", "A6836-", "T6901C", "T6904C", "A6910G", "G6935A", "T6946G", "A6947G", "A6959-", "A6960-", "A6962-", "A6965C", "-6970G", "-6971G", "-6975T", "-6980C", "-6982G", "-6991A", "-6994A", "-6995A", "-6997T", "A7005G", "A7129G", "T7144C", "A7148G", "A7149T", "T7150G", "C7155A", "A7158C", "T7159A", "G7160A", "G7162C", "C7164A", "-7165T", "-7168G", "-7169A", "G7269A", "A7275G", "C7325T", "C7411T", "T7447C", "A7504G", "G7614A", "G7633T", "T7642C", "A7677G", "C7747T", "T7921G", "G7942C", "G7980A", "A8069T", "T8103C", "A8119G", "T8167A", "C8220T", "G8254A", "G8317A", "C8320T", "A8323T", "G8328T", "G8393A", "T8414G", "C8415A", "C8440T", "G8458A", "G8516A", "A8570G", "C8670A", "T8701A", "A8793C", "G8794A", "A8812C", "T8829C", "G8861A", "G8888A", "C8945T", "G8997-"], "INT": ["I31V", "K34R", "Q136K", "K173R", "T206S", "N254K"], "RT-p51": ["T39K", "E40D", "T107I", "Q174K", "K211R", "K275R", "Q278Y", "A297T", "D324E", "A376S", "L377V", "T386I"], "RT-p66": ["T39K", "E40D", "T107I", "Q174K", "K211R", "K275R", "Q278Y", "A297T", "D324E", "A376S", "L377V", "T386I", "T477A"], "gp120": ["T3A", "N5D", "R18E", "E59G", "-109T", "Y145F", "I156L", "N158G", "K203E", "E241G", "D309E", "K319G", "-323E", "-324T", "-326S", "-327N", "N328-", "S336H", "G361N", "N364K", "S365G", "-368P", "N369G", "N370G", "T371I", "-372E", "-373Q", "-375E", "-376T", "-377N", "T380G", "N432V", "-433N", "N435T", "T436N", "R472K", "K474R"], "gp41": ["L8F", "S104N", "E110D", "D125S", "F206L", "Q213H", "G226D", "S256C", "V267A", "A306V", "L340F", "R342I"], "nef": ["A33V", "R39K", "I43V", "L110I", "F120Y", "R151Q", "N157T", "C163R", "M173I"], "p17": ["V7I", "A15E", "K26R", "K28R", "S38G", "G54D", "Q90R", "I92M", "E93G", "V94I", "S125N"], "p24": ["M10P", "V11I", "I15M", "V27I", "M96I", "K154R", "N183S", "V191I", "S200T"], "p6": ["L38V", "T39A"], "pro": ["I36M", "V63I", "M89I"], "rev": ["I18T", "K32Q", "Q74L", "N91D"], "tat": ["N23S", "Q35P", "T57A"], "vif": ["K36N", "S118T", "T157P", "T159P", "C192R"], "vpr": ["Y15H", "M19T", "P37L", "R85Q"], "vpu": ["I2N", "P3S", "Q5Y", "V26I"]}, "labels": {"aa": "INT: I31V, K34R, Q136K, K173R, T206S, N254K; RT-p51: T39K, E40D, T107I, Q174K, K211R, K275R, Q278Y, A297T, D324E, A376S, L377V, T386I; RT-p66: T39K, E40D, T107I, Q174K, K211R, K275R, Q278Y, A297T, D324E, A376S, L377V, T386I, T477A; gp120: T3A, N5D, R18E, E59G, -109T, Y145F, I156L, N158G, K203E, E241G, D309E, K319G, -323E, -324T, -326S, -327N, N328-, S336H, G361N, N364K, S365G, -368P, N369G, N370G, T371I, -372E, -373Q, -375E, -376T, -377N, T380G, N432V, -433N, N435T, T436N, R472K, K474R; gp41: L8F, S104N, E110D, D125S, F206L, Q213H, G226D, S256C, V267A, A306V, L340F, R342I; nef: A33V, R39K, I43V, L110I, F120Y, R151Q, N157T, C163R, M173I; p17: V7I, A15E, K26R, K28R, S38G, G54D, Q90R, I92M, E93G, V94I, S125N; p24: M10P, V11I, I15M, V27I, M96I, K154R, N183S, V191I, S200T; p6: L38V, T39A; pro: I36M, V63I, M89I; rev: I18T, K32Q, Q74L, N91D; tat: N23S, Q35P, T57A; vif: K36N, S118T, T157P, T159P, C192R; vpr: Y15H, M19T, P37L, R85Q; vpu: I2N, P3S, Q5Y, V26I"}}}]}]}]}, {"name": "CRF11_cpx_NODE_0000018", "node_attrs": {"div": 0.09776999999999998, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T201C", "G365C", "A509G", "C691A", "G755A", "C773T", "G920A", "A978G", "G1089A", "C1211T", "T1329A", "T1444C", "A1587C", "G1773A", "A1776G", "C1831T", "G1846A", "G2134A", "A2329G", "A2714G", "C2779T", "A2846T", "C2960T", "T3225C", "T3551C", "T3566C", "G3643A", "A4003G", "G4637A", "A4693C", "G4892A", "T4976C", "A5065G", "G5094A", "G5359A", "G5415A", "T5451C", "A5463G", "A5545G", "-5603T", "C5704T", "T5707C", "A5720G", "A5751C", "A5845G", "G5915A", "T6024C", "-6206A", "-6225C", "C6692G", "T6793A", "A6834-", "A6937G", "-6995G", "-6997A", "A7036G", "A7152C", "C7155-", "G7162T", "-7168G", "-7169A", "G7190A", "A7234G", "A7676G", "G8173A", "C8268T", "T8414C", "C8507T", "G8558A", "C8913A", "T8947-", "C9073T", "A9135G"], "INT": ["D288N"], "RT-p51": ["K207E", "S251C", "L377T"], "RT-p66": ["K207E", "S251C", "L377T"], "gp120": ["D21N", "N159-", "S160-", "N161-", "S162-", "S278G", "Q315K", "-323K", "D446N", "R448K"], "gp41": ["A322V"], "p17": ["A119E"], "p24": ["L83V", "G120S"], "p6": ["E32K", "K33E", "S51L"], "pro": ["V63T"], "rev": ["V109I"], "tat": ["T57A", "S59P"], "vif": ["K36T", "Q136P", "K160R", "A170T", "R181K"], "vpr": ["R85Q"], "vpu": ["I13V", "K38R", "E48D", "N80D"]}, "labels": {"aa": "INT: D288N; RT-p51: K207E, S251C, L377T; RT-p66: K207E, S251C, L377T; gp120: D21N, N159-, S160-, N161-, S162-, S278G, Q315K, -323K, D446N, R448K; gp41: A322V; p17: A119E; p24: L83V, G120S; p6: E32K, K33E, S51L; pro: V63T; rev: V109I; tat: T57A, S59P; vif: K36T, Q136P, K160R, A170T, R181K; vpr: R85Q; vpu: I13V, K38R, E48D, N80D"}}, "children": [{"name": "CRF11_cpx_NODE_0000019", "node_attrs": {"div": 0.10459999999999998, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C379A", "A386G", "C558A", "G612A", "A618G", "A619C", "G620A", "C767T", "G810A", "T1325C", "A1355G", "G1661A", "A1982G", "C2848T", "G2998A", "G3279A", "C3376T", "G3391A", "A4076C", "T4426C", "A4625G", "G4677A", 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E116K; vif: K179R; vpu: I2Q, P3T, Q5E"}}, "children": [{"name": "KX389633", "node_attrs": {"div": 0.15386, "accession": "KX389633", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "NG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09NG010131"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A380T", "C435T", "G438A", "A440G", "A461C", "T479C", "G540A", "A554G", "A557G", "A571T", "C605A", "T662G", "G703A", "C707T", "G709A", "A712G", "A752G", "A755G", "T773A", "A774G", "G803A", "G821A", "T858C", "C897T", "G963A", "C964T", "A1017C", "A1028C", "G1232A", "A1242G", "A1263T", "A1265G", "G1271T", "C1295T", "C1330G", "T1334A", "A1370G", "G1404A", "A1412G", "T1451A", "G1493A", "C1517T", "T1559C", "A1595G", "G1687A", "C1754T", "A1771G", "A1773G", "G1775-", "G1776-", "A1777-", "C1782T", "C1791G", "G1819A", "T1831C", "A1835G", "A1843G", "A1985C", "C1986T", "G1999A", "T2101C", "T2104C", "C2206T", "A2210G", "A2230G", "A2293G", "T2315C", 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"D248E", "P272A", "K281R", "T369A", "T377G", "T403I", "A437V"], "RT-p66": ["T39A", "E122Q", "S123D", "E169D", "Q174K", "E177D", "V179I", "V202I", "D248E", "P272A", "K281R", "T369A", "T377G", "T403I", "A437V", "V458I", "H483Y", "Q507H", "A508S", "Q520K", "V531I", "S554A"], "gp120": ["T3E", "E4T", "R18K", "N21T", "T22A", "T23P", "T35N", "V40I", "N66T", "N71S", "E74D", "I80V", "K93R", "-109S", "-111M", "-112G", "-114S", "-115T", "-116M", "-117N", "-118S", "-119Q", "-120A", "I126M", "I133T", "R138Q", "L147I", "V154T", "N157D", "S171T", "T181N", "K203Q", "E204N", "N206T", "T208K", "P210L", "T216S", "E241G", "V242I", "R243K", "I256L", "N261A", "K277R", "G278S", "I279V", "H280R", "A288M", "G293D", "V294I", "H302Y", "V305I", "T308E", "K315R", "Q316E", "Q320E", "N334D", "N335E", "G351R", "Y356F", "-368Y", "N369E", "-371D", "-372T", "-373E", "-374T", "-375N", "-376N", "-377T", "N378G", "N379S", "T380V", "-382G", "-384T", "R401N", "Q412P", "N432A", "-433P", "N435R", "E438D", "N446D", "K457Q", "K464S", "K474R"], "gp41": ["I4M", "S42N", "K56Q", "V72L", "S102T", "D109T", "R122K", "D125G", "T130L", "D148E", "N160S", "K214R", "A216P", "G221E", "L242S", "A243T", "A245F", "R250W", "N251S", "R259L", "E272G", "Q294R", "S302N", "A306T", "I309V", "V321I", "V322A", "A325V", "I329F", "L345Q"], "nef": ["E15Q", "I20L", "E28A", "H40S", "A49P", "E63D", "E65D", "K104R", "F143Y", "E158K", "N161D", "C163S", "I168M", "E177D", "F202Y"], "p17": ["V35M", "E42D", "G69R", "Y79F", "N109K", "G123E", "S125N", "N126S"], "p2": ["V7A"], "p24": ["I15V", "A78I", "M96L", "T171A", "T178S", "E180D", "G225S"], "p6": ["S3N", "K31R", "K32E", "E33-", "L38V", "S47N", "L51S"], "p7": ["K41Q"], "pro": ["I13V", "T63L"], "rev": ["L13R", "T14E", "V16I", "R17K", "I21L", "S34T", "S61D", "T62A", "C63F", "E68V", "G96R", "S100P", "R113G"], "tat": ["K19R", "Q24K", "Y26H", "Y36V", "K40N", "R52W", "A57T", "P59S", "S62N", "D67A", "T78K", "R79G", "K80N", "E86K"], "vif": ["R4K", "M8V", "V31I", "T36K", "I51V", "Q83H", "R158K", "T159E", "R160K", "T188I", "M189L"], "vpr": ["N16T", "V70I", "G86R"], "vpu": ["A11G", "I18A", "V26A", "L33W", "R38K", "D44N", "E62D", "Q66K"]}, "labels": {"aa": "INT: L74M, K111T, N134G, T206S, D278G, G283S; RT-p51: T39A, E122Q, N123D, E169D, Q174K, E177D, V179I, V202I, D248E, P272A, K281R, T369A, T377G, T403I, A437V; RT-p66: T39A, E122Q, S123D, E169D, Q174K, E177D, V179I, V202I, D248E, P272A, K281R, T369A, T377G, T403I, A437V, V458I, H483Y, Q507H, A508S, Q520K, V531I, S554A; gp120: T3E, E4T, R18K, N21T, T22A, T23P, T35N, V40I, N66T, N71S, E74D, I80V, K93R, -109S, -111M, -112G, -114S, -115T, -116M, -117N, -118S, -119Q, -120A, I126M, I133T, R138Q, L147I, V154T, N157D, S171T, T181N, K203Q, E204N, N206T, T208K, P210L, T216S, E241G, V242I, R243K, I256L, N261A, K277R, G278S, I279V, H280R, A288M, G293D, V294I, H302Y, V305I, T308E, K315R, Q316E, Q320E, N334D, N335E, G351R, Y356F, -368Y, N369E, -371D, -372T, -373E, -374T, -375N, -376N, -377T, N378G, N379S, T380V, -382G, -384T, R401N, Q412P, N432A, -433P, N435R, E438D, N446D, K457Q, K464S, K474R; gp41: I4M, S42N, K56Q, V72L, S102T, D109T, R122K, D125G, T130L, D148E, N160S, K214R, A216P, G221E, L242S, A243T, A245F, R250W, N251S, R259L, E272G, Q294R, S302N, A306T, I309V, V321I, V322A, A325V, I329F, L345Q; nef: E15Q, I20L, E28A, H40S, A49P, E63D, E65D, K104R, F143Y, E158K, N161D, C163S, I168M, E177D, F202Y; p17: V35M, E42D, G69R, Y79F, N109K, G123E, S125N, N126S; p2: V7A; p24: I15V, A78I, M96L, T171A, T178S, E180D, G225S; p6: S3N, K31R, K32E, E33-, L38V, S47N, L51S; p7: K41Q; pro: I13V, T63L; rev: L13R, T14E, V16I, R17K, I21L, S34T, S61D, T62A, C63F, E68V, G96R, S100P, R113G; tat: K19R, Q24K, Y26H, Y36V, K40N, R52W, A57T, P59S, S62N, D67A, T78K, R79G, K80N, E86K; vif: R4K, M8V, V31I, T36K, I51V, Q83H, R158K, T159E, R160K, T188I, M189L; vpr: N16T, V70I, G86R; vpu: A11G, I18A, V26A, L33W, R38K, D44N, E62D, Q66K"}}}, {"name": "JF683802", "node_attrs": {"div": 0.14789, "accession": "JF683802", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CY"}, "date": {"value": 2009.0}, "Strain_name": {"value": "CY259"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C365G", "A380C", "G468C", "A494C", "G495A", "G498A", "G509A", "A511C", "G518A", "G519A", "C528A", "T596G", "C603A", "A604G", "A609G", "T616G", "C623A", "G667A", "C688G", "G693A", "C713T", "A714C", "T718G", "C734T", "G771T", "A776G", "A779G", "G784A", "T788A", "A835G", "A866G", "C917T", "T936C", "A1010G", "C1013T", "G1078C", "C1094T", "G1173A", "T1174C", "G1184A", "A1192G", "T1220C", "T1244C", "G1311T", "C1330A", "C1403A", "C1444T", "G1489A", "C1490A", "G1508A", "G1562A", "C1587A", "C1616T", "G1619A", "G1657A", "C1682T", "A1733G", "T1787C", "C1791T", "T1828C", "G1841A", "A1857G", "A1902G", "A1932G", "G1972A", "A2026G", "G2027A", "A2059G", "A2210T", "C2211T", "A2223G", "T2326C", "T2383C", "G2459A", "C2464T", "C2503T", "C2589T", "T2708C", "G2725A", "A2727G", "A2734G", "T2735C", "C2776T", "G2816A", "T2854A", 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"A6821C", "A6858C", "T6875G", "T6883C", "A6910T", "T6922C", "G6935A", "-6956A", "A6959T", "-6961C", "-6963C", "-6966C", "T6967A", "-6968T", "-6969A", "-6970T", "-6971A", "-6972T", "-6973A", "-6975T", "-6977C", "A6986G", "C6993G", "-6994C", "G6995A", "A6996C", "A7000-", "A7007G", "T7009A", "A7012C", "G7044A", "T7045C", "A7063G", "G7072A", "A7090G", "A7095T", "C7108G", "A7123G", "A7129G", "C7152A", "A7154G", "-7155T", "A7158C", "A7163-", "C7164-", "C7174T", "T7180C", "A7231G", "G7269A", "C7328T", "G7366A", "C7411T", "G7441A", "T7447C", "A7475C", "A7533G", "A7590C", "T7605A", "T7642C", "A7689T", "C7699T", "G7720A", "A7722C", "G7729A", "T7757C", "G7759T", "G7835A", "C7906T", "C7912A", "A7918T", "T7921G", "T7930C", "C7932T", "A7943C", "A7947G", "G7949A", "G7962A", "G7977A", "G7979A", "A8032T", "C8044G", "A8051C", "G8079A", "G8087A", "T8112C", "A8204G", "C8221T", "G8231A", "C8232T", "A8242G", "A8271G", "G8276A", "T8277C", "A8288G", "C8291T", "C8293T", "T8302C", "T8321G", "T8322C", "G8335T", 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"R472K"], "gp41": ["L9F", "T58P", "K77R", "N96T", "V101N", "D109N", "E119Q", "Q129L", "N140T", "V178I", "F206L", "T210I", "K214Q", "E215G", "A216T", "G220E", "G225E", "G226S", "D247E", "R259Q", "D262N", "I270T", "I281T", "I301V", "A310I", "Q323R", "A325T", "I329V", "L330F", "L340A", "L344F"], "nef": ["W5C", "I10L", "V11A", "P14S", "I20M", "I43L"], "p1": ["S9N"], "p17": ["A45P", "G54R", "E55K", "Q59P", "M61I", "E62K", "Q65K", "C87W", "Q90S", "I92V", "V94G", "D96E", "S111N", "A118G", "A120T", "K127Q", "V128G"], "p24": ["A14S", "I15M", "R18K", "E35G", "G116A", "V148T", "K154R", "A194S", "S200N"], "p6": ["L50S"], "p7": ["G8E"], "pro": ["V15I", "K20R", "E35G", "K45R", "V77I"], "rev": ["T14A", "I18V", "Y28H", "K32T", "S34N", "R44K", "T62S", "R66G", "E68A", "R80K"], "tat": ["E2D", "N64S", "L74S", "P75S", "T78N", "K80E", "E85K"], "vif": ["H27Y", "V31N", "A35T", "L59V", "E117D", "R132K", "A137T", "N140T", "K141Q", "T155P", "T159P", "G185E"], "vpr": ["L22V", "E25D", "P37T", "E55T", "I61V", "Q85P", "A93S"], "vpu": ["I18L", "L33R", "K37R", "A50E", "T61K"]}, "labels": {"aa": "INT: S39N, L45A, G106A, N134D, E167D, V201I, T218L, Q221H, N222K, S255N; RT-p51: T39L, K43R, E122K, T165I, K211R, F214L, V241I, P272S, L283I, S322E, L334Q, D335E, V371A, T386I; RT-p66: T39L, K43R, E122K, S123N, T165I, K211R, F214L, V241I, P272S, L283I, S322E, L334Q, D335E, V371A, T386I, E449N, S519N, K527S; gp120: N1K, E4D, N5D, T35P, N52D, N108I, -109N, -111T, -112A, -122E, -123K, -124I, E125N, K140R, K141E, R150E, V153I, I156L, N157-, -159D, -160K, -161T, -162D, R164M, N169T, R201K, K203T, E204K, V217A, F249L, N261D, R265Q, F289I, A291T, G293S, Q300E, T308K, E309A, Q316K, R322Y, K323Q, N335T, L341V, G361K, N370Y, N378D, T380S, E381T, -382N, N383D, -384A, T385N, I386L, R397H, M406I, E414V, D418E, N435V, R472K; gp41: L9F, T58P, K77R, N96T, V101N, D109N, E119Q, Q129L, N140T, V178I, F206L, T210I, K214Q, E215G, A216T, G220E, G225E, G226S, D247E, R259Q, D262N, I270T, I281T, I301V, A310I, Q323R, A325T, I329V, L330F, L340A, L344F; nef: W5C, I10L, V11A, P14S, I20M, I43L; p1: S9N; p17: A45P, G54R, E55K, Q59P, M61I, E62K, Q65K, C87W, Q90S, I92V, V94G, D96E, S111N, A118G, A120T, K127Q, V128G; p24: A14S, I15M, R18K, E35G, G116A, V148T, K154R, A194S, S200N; p6: L50S; p7: G8E; pro: V15I, K20R, E35G, K45R, V77I; rev: T14A, I18V, Y28H, K32T, S34N, R44K, T62S, R66G, E68A, R80K; tat: E2D, N64S, L74S, P75S, T78N, K80E, E85K; vif: H27Y, V31N, A35T, L59V, E117D, R132K, A137T, N140T, K141Q, T155P, T159P, G185E; vpr: L22V, E25D, P37T, E55T, I61V, Q85P, A93S; vpu: I18L, L33R, K37R, A50E, T61K"}}}]}, {"name": "CRF11_cpx_NODE_0000020", "node_attrs": {"div": 0.10319999999999999, "clade_membership": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C531T", "A562G", "T636C", "G1350C", "A1525G", "T1741C", "G1999A", "G2926A", "C3712T", "G3766A", "G3796A", "C3823T", "A3874G", "T4397A", "T4656C", "G5066A", "C5554T", "C6097T", "C6183-", "-6212A", "-6213T", "-6214A", "-6221C", "-6222A", "-6223A", "C6289T", "A6338G", "G6339A", "C6641A", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "G6742A", "A6820G", "A6855C", "-6957T", "-6981G", "-6982G", "-6984A", "A6990G", "T7045A", "G7324A", "T7462A", "G7868A", "G7961A", "C8065T", "A8163G", "C8213T", "G8387A", "T8504C", "G8732A", "A8739G", "T8835C", "T8847A", "C8948-"], "INT": ["L208I"], "gp120": ["L151-", "-384D", "M398L", "N437S"], "gp41": ["H53Q", "E119Q", "A189T", "G220R", "N287S", "L304F"], "nef": ["I133V", "C169S"], "p17": ["P66S", "K76R"], "p2": ["V7A"], "p24": ["S200T"], "p6": ["I21T"], "p7": ["K20R", "K41Q"], "rev": ["R38Q"], "tat": ["R60Y"]}, "labels": {"aa": "INT: L208I; gp120: L151-, -384D, M398L, N437S; gp41: H53Q, E119Q, A189T, G220R, N287S, L304F; nef: I133V, C169S; p17: P66S, K76R; p2: V7A; p24: S200T; p6: I21T; p7: K20R, K41Q; rev: R38Q; tat: R60Y"}}, "children": [{"name": "KY658700", "node_attrs": {"div": 0.14801999999999998, "accession": "KY658700", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "CM"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DE01111CM045"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G167A", "T200G", "-305T", "T372C", "G395A", "A431G", "A480G", "G495A", "G496A", "G518A", "A520G", "T525C", "A548G", "T560C", "C603G", "A604G", "G632A", "A647G", "C668T", "A680C", "T722C", "T746C", "A752G", "C767T", "G771C", "T936C", "G956A", "A1073G", "G1078C", "C1091T", "A1124G", "A1142C", "T1211A", "A1265G", "G1271T", "A1292C", "G1302A", "G1405C", "T1451-", "A1452-", "C1453-", "A1455G", "A1456C", "T1457A", "-1458A", "-1459A", "-1460T", "A1476G", "T1484C", "T1520C", "C1541T", "G1562A", "C1610T", "T1679C", "A1715G", "C1768A", "G1781A", "T1828A", "A1985G", "G2002A", "T2017A", "A2063C", "A2210T", "G2224A", "T2236C", "T2369C", "A2407G", "G2422A", "G2566A", "A2605C", "C2615A", "A2626G", "A2722G", "T2770C", "T2779G", "C2822A", "A2907T", "A2965T", "C2968T", "A2969G", "T3059A", "A3064G", "C3171G", "A3217G", "A3218G", "C3225A", "A3230T", 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"Q174K", "P243T", "Y271F", "I292V", "S322T", "T359S", "I375V", "T377Q", "S379C", "T397I", "L491P", "I495V", "V496I", "L517I"], "gp120": ["T3N", "N5K", "N21S", "N52D", "P57A", "N102T", "D105E", "-107V", "-109T", "-120I", "-121S", "-122D", "-123Q", "-124A", "I126V", "I137R", "K141R", "K142R", "K143Q", "-151N", "N158S", "-159T", "-160N", "-161G", "-162E", "R164M", "N167S", "T181S", "K203E", "E247K", "A253T", "L260F", "T269I", "N272S", "F289I", "D294E", "Q300R", "N304S", "S306N", "N311K", "T313K", "A318T", "K319V", "R322G", "K323E", "-326G", "-327T", "N334A", "N335S", "S360T", "G361K", "-368F", "N370D", "-371T", "-372N", "-373G", "-374T", "-375W", "-376R", "-377E", "N379G", "-382D", "N383K", "T387Y", "R401T", "Q412R", "D418N", "N432Q", "-433S", "N435-", "T436E", "K457R", "R472K", "K474R", "E479Q"], "gp41": ["I4M", "A21V", "K46R", "K56R", "Q66R", "K77Q", "K90R", "V101I", "S107T", "E110Q", "D113E", "N160S", "I193L", "F206L", "T210I", "K214A", "E215G", "G225E", "T232P", "S239D", "F255W", "Y257C", "R259Q", "V267A", "E272G", "I281A", "K297R", "A306T", "A310V", "Q323L", "L326F", "I329V", "A343L"], "nef": ["E15A", "R22Q", "A33V", "K39R", "I43V", "A49S", "E63D", "E158K", "I168M", "M173I", "D174E", "S187P", "R191-", "R192-", "H193-", "I194-", "A195-", "R196-", "E197-", "L198-", "H199-", "P200-", "E201-", "F202-", "Y203-"], "p17": ["S49G", "G54K", "M61I", "E62G", "Q90G", "I104M", "K115N"], "p2": ["T8Q", "N9Q", "-11A", "-12N"], "p24": ["A14P", "G116A", "E180D", "E187D", "V191I", "A207P", "G225A"], "p6": ["P30Q", "L50*"], "p7": ["S4G"], "pro": ["T63A", "M89L"], "rev": ["S8N", "A15T", "K32S", "N50T", "I55V", "Q57R", "T62A", "Q74E", "D99G"], "tat": ["E2D", "Y36H", "S46Y", "S61N", "K63E", "P75S", "T78K", "K80E"], "vif": ["H22N", "T36A", "I51V", "L64I", "V98I", "G101D", "M109I", "I124L", "S130R", "T155P", "T157V", "V166I", "K181R", "G185E", "M189K"], "vpr": ["N16Q", "H45Y", "N48D", "Y50H", "I84V", "Q85P", "A93P", "S94R"], "vpu": ["V7I", "V14I", "A15V", "F16S", "V20I", "V21I", "L34Q", "R35K", "R41K", "D48A", "E56D", "E58D", "V79I"]}, "labels": {"aa": "INT: R14K, V112A, S119P, N134D, Q136K, I203M, D207E, K211R, I268L; RT-p51: T39S, Q174K, P243T, Y271F, I292V, S322T, T359S, I375V, T377Q, S379C, T397I; RT-p66: T39S, S123N, Q174K, P243T, Y271F, I292V, S322T, T359S, I375V, T377Q, S379C, T397I, L491P, I495V, V496I, L517I; gp120: T3N, N5K, N21S, N52D, P57A, N102T, D105E, -107V, -109T, -120I, -121S, -122D, -123Q, -124A, I126V, I137R, K141R, K142R, K143Q, -151N, N158S, -159T, -160N, -161G, -162E, R164M, N167S, T181S, K203E, E247K, A253T, L260F, T269I, N272S, F289I, D294E, Q300R, N304S, S306N, N311K, T313K, A318T, K319V, R322G, K323E, -326G, -327T, N334A, N335S, S360T, G361K, -368F, N370D, -371T, -372N, -373G, -374T, -375W, -376R, -377E, N379G, -382D, N383K, T387Y, R401T, Q412R, D418N, N432Q, -433S, N435-, T436E, K457R, R472K, K474R, E479Q; gp41: I4M, A21V, K46R, K56R, Q66R, K77Q, K90R, V101I, S107T, E110Q, D113E, N160S, I193L, F206L, T210I, K214A, E215G, G225E, T232P, S239D, F255W, Y257C, R259Q, V267A, E272G, I281A, K297R, A306T, A310V, Q323L, L326F, I329V, A343L; nef: E15A, R22Q, A33V, K39R, I43V, A49S, E63D, E158K, I168M, M173I, D174E, S187P, R191-, R192-, H193-, I194-, A195-, R196-, E197-, L198-, H199-, P200-, E201-, F202-, Y203-; p17: S49G, G54K, M61I, E62G, Q90G, I104M, K115N; p2: T8Q, N9Q, -11A, -12N; p24: A14P, G116A, E180D, E187D, V191I, A207P, G225A; p6: P30Q, L50*; p7: S4G; pro: T63A, M89L; rev: S8N, A15T, K32S, N50T, I55V, Q57R, T62A, Q74E, D99G; tat: E2D, Y36H, S46Y, S61N, K63E, P75S, T78K, K80E; vif: H22N, T36A, I51V, L64I, V98I, G101D, M109I, I124L, S130R, T155P, T157V, V166I, K181R, G185E, M189K; vpr: N16Q, H45Y, N48D, Y50H, I84V, Q85P, A93P, S94R; vpu: V7I, V14I, A15V, F16S, V20I, V21I, L34Q, R35K, R41K, D48A, E56D, E58D, V79I"}}}, {"name": "AJ291720", "node_attrs": {"div": 0.14861999999999997, "accession": "AJ291720", "clade_membership": {"value": "CRF11_cpx"}, "country": {"value": "FR"}, "date": {"value": 1999.0}, "Strain_name": {"value": "MP1307"}, "LANL_subtype": {"value": "CRF11_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G10A", "T41G", "G43T", "T94C", "C96A", "T154C", "G158T", "C160A", "C175A", "C179A", "T182-", "A194C", "T200C", "G202C", "A203G", "G256A", "A263G", "A302T", "-305A", "C426T", "G428A", "C435T", "A437G", "G540A", "A569G", "C583T", "C605G", "A645G", "C657A", "C713T", "A730T", "G770A", "T789C", "A839G", "T944G", "G956T", "A998G", "A1074G", "A1076G", "A1115C", "C1137T", "A1151G", "A1242G", "A1278G", "A1279G", "T1335C", "A1340G", "C1342G", "C1351A", "G1404A", "G1418A", "T1422C", "A1442G", "T1451A", "A1496G", "G1498A", "G1553A", "A1656C", "G1657A", "A1733G", "G1737A", "G1739C", "C1744T", "C1745A", "-1746G", "-1747C", "-1748C", "G1819A", "C1826A", "G1841A", "C1845A", "A1857G", "T1888C", "A1903T", "A1958G", "A1981T", "A2029G", "T2043C", "T2066A", "A2182G", "A2216T", "T2257C", "A2293G", "G2294A", "C2356T", "T2383C", "A2404G", "T2443C", "A2463G", "G2473A", "G2566T", "C2620T", "A2626T", "C2635A", "G2660A", "A2695G", "T2724G", "A2738T", "C2739A", "C2848T", "G2872A", "C3023T", "T3059G", "C3100T", "A3120T", "A3199G", "A3200G", "A3211G", "A3214G", "C3224A", "G3226A", "T3328C", "G3379T", "G3403A", "A3451G", "G3467A", "T3472G", "A3524G", "C3545T", "T3573C", "T3589C", "A3637G", "G3664A", "A3675T", "A3676G", "G3685A", "A3761G", "A3808C", "G3836A", "C3857T", "G3916A", "C3995T", "G4003A", "T4153A", "G4175A", "G4195A", "A4333G", "A4420G", "A4498G", "G4531A", "T4652C", "T4674C", "G4677A", "G4689A", "A4695G", "G4703A", "G4735A", "G4749A", "G4773A", "T4805G", "G4835T", "A4862G", "A4901T", "T4910C", "T4916C", "T4967G", "A5038G", "A5061G", "G5128A", "A5142G", "G5143-", "C5144-", "C5145-", "A5146-", "T5147-", "A5148-", "G5153C", "G5179A", "C5221T", "A5235T", "T5286C", "T5294C", "C5303T", "G5312A", "C5334A", "T5339C", "A5415T", "A5431C", "T5442C", "A5462G", "T5467A", "T5482A", "A5483T", "C5487T", "T5491C", "A5544C", "G5548A", "A5581G", "G5599-", "C5602A", "C5614A", "T5617A", "A5629G", "G5644A", "T5684C", "T5705G", "G5730A", "-5793T", "C5803A", "A5839C", "A5861G", "A5865G", "G5872A", "C5878A", "A5906G", "G5907A", "C5984T", "A6022G", "G6029A", "A6044G", "T6046G", "C6115T", "C6160A", "A6164G", "G6167A", "A6172T", "A6174C", "G6175T", "A6176T", "A6177C", "-6180A", "-6181T", "-6183G", "-6186C", "-6187T", "-6188G", "-6189C", "-6190G", "-6191G", "-6192A", "-6193T", "-6194A", "-6195C", "-6196A", "-6197A", "-6198C", "-6199C", "-6205G", "-6207A", "-6208G", "-6209T", "-6210T", "-6211G", "-6219G", "-6220G", "C6225A", "A6226C", "A6229C", "A6233T", "A6234T", "C6238T", "T6239G", "T6242A", "T6244C", "C6247A", "A6249G", "A6251T", "A6253G", "A6254C", "A6257G", "C6258A", "G6260A", "A6261G", "A6262G", "T6264A", "A6266-", "G6267-", "A6268-", "G6269-", "A6270-", "T6271-", "A6272-", "A6273-", "G6274-", "A6275-", "A6276-", "G6277-", "A6278C", "A6279T", "A6281G", "T6287A", "G6290A", "G6292A", "T6294A", "T6296G", "T6297A", "C6298A", "G6303A", "G6308T", "A6309T", "T6310C", "T6312A", "C6318T", "A6319T", "T6322A", "A6327T", "T6331G", "A6332G", "A6333T", "T6334A", "G6336A", "G6345A", "G6346T", "C6347A", "T6351A", "A6352T", "T6355A", "G6362A", "T6365A", "C6369T", "G6371A", "T6372A", "A6376G", "C6381G", "G6384C", "A6388G", "C6412A", "T6427C", "C6446-", "T6447-", "G6451A", "T6452G", "A6455G", "T6460A", "T6467-", "T6468A", "G6481A", "A6484G", "G6490C", "A6520G", "C6523T", "G6526A", "C6542A", "T6551C", "G6582A", "A6595C", "A6638G", "G6639A", "T6640A", "-6702C", "T6719C", "G6725A", "C6758T", "T6766C", "G6767A", "A6773G", "A6774G", "C6777A", "A6780C", "A6781C", "C6787T", "T6794C", "A6810C", "A6818T", "A6822G", "A6823G", "A6848G", "A6936G", "G6937T", "-6956A", "T6958-", "A6959-", "A6960-", "A6962-", "A6965-", "T6967-", "A6974-", "T6976-", "-6980T", "-6983A", "A6985C", "T6988C", "C6993T", "-6994G", "-6998C", "-6999C", "T7009A", "A7013G", "C7014T", "T7015A", "G7026A", "A7046T", "G7094A", "A7095T", "C7108A", "C7124A", "C7152T", "T7153G", "-7155A", "A7158C", "T7159A", "C7164G", "-7165T", "G7212A", "C7264T", "A7313C", "G7322C", "C7328T", "G7428A", "G7441A", "C7463A", "G7513A", "G7517C", "A7533G", "G7534A", "A7539G", "A7573G", "A7604G", "A7666T", "G7669A", "G7676C", "A7722G", "T7774C", "A7781G", "G7790A", "A7791G", "A7818G", "C7912T", "T7913C", "A7942C", "G7957A", "G7980A", "A7992G", "G8001A", "A8002C", "T8047C", "T8101A", "A8119G", "C8145T", "G8159T", "T8167A", "G8168A", "G8264A", "T8272G", "T8278G", "T8287A", "A8323T", "G8329A", "A8351C", "G8354A", "C8413G", "C8460T", "A8461T", "G8469C", "G8476C", "C8500A", "T8501A", "G8516A", "C8552T", "G8554A", "T8594A", "G8604A", "A8617G", "T8685C", "C8699A", "T8701A", "C8741T", "A8746T", "G8794A", "G8804A", "C8840T", "A8874G", "-8947G", "-8948G", "C8951T", "A8954G", "G8955A", "C9018T", "T9126G", "G9128T", "T9179C", "C9181A"], "INT": ["E11D", "A21T"], "RT-p51": ["M41L", "D67N", "N123S", "E177D", "V189M", "L210W", "T215Y", "S322A", "Y342F", "T369A", "Q428H"], "RT-p66": ["M41L", "D67N", "E177D", "V189M", "L210W", "T215Y", "S322A", "Y342F", "T369A", "Q428H", "I452M", "V458I", "T477A", "V493A", "K527M", "I556V"], "gp120": ["T3A", "E4G", "R18E", "H44Y", "I56M", "E59K", "N64E", "N102K", "T104A", "D105-", "V106-", "N108-", "T110-", "-111N", "-112V", "-113T", "-114S", "-115N", "N128V", "C129N", "S130D", "F131Y", "T134N", "T135K", "E136-", "I137-", "R138-", "D139-", "K140-", "K141-", "K142-", "K143-", "E144-", "Y145-", "A146-", "L147-", "F148-", "Y149-", "R150-", "D152-", "V153-", "V154-", "P155-", "I156-", "N157-", "N158-", "Y163-", "R164-", "L165-", "I166-", "N167-", "V170I", "S171V", "V173I", "K174N", "A176G", "C177S", "L198-", "F205-", "K212N", "Q230K", "R243K", "E247D", "S262E", "R265K", "I281T", "F289L", "A291T", "D294A", "H302Y", "V305I", "K307G", "T308K", "E309A", "K319T", "R322W", "K323R", "I332V", "N334T", "-368I", "N369W", "N379S", "T380M", "-382P", "T387V", "R391K", "E414I", "D418E", "L424I", "-433M", "N435D", "K448R", "S453N"], "gp41": ["I4L", "V7L", "L9F", "S42N", "L54M", "V72L", "K77R", "Q79R", "E121D", "D125H", "N140S", "N160D", "D163S", "K172R", "Q213H", "G226D", "D230G", "R233N", "G286W", "A289T", "V321I", "A325V", "L340F"], "nef": ["P24R", "H40F", "I43L", "S45T", "A53E", "R71K", "G88S", "K92R", "Y115H", "F120Y", "Y135F", "R151K", "R178G", "F202W"], "p1": ["S9H"], "p17": ["G69R", "A83V", "I104V", "Q108K", "Y132F"], "p24": ["D71E", "E75D", "I115V", "E128D", "T171A", "N183G", "A204G", "A207Q", "G225S"], "p6": ["E20N", "A22G", "-26K", "S47N"], "p7": ["R11K"], "pro": ["L10I", "V15I", "A16E", "K20R", "E35D", "I54V", "E61D", "V82A", "L90M"], "rev": ["E10A", "K32Q", "A37T", "I52L", "S67P", "L73F", "C85S", "N91D", "G104V", "C107N"], "tat": ["Q13H", "K19Q", "K29R", "C31S", "Y36I", "A58T", "I69V", "G83D"], "vif": ["Y30H", "V31I", "A35T", "R37G", "R50K", "V55I", "E63K", "H73Q", "Q83H", "Q105H", "H127Q", "K151R", "T159A", "S186A", "H187I", "T188-", "M189-"], "vpr": ["E13G", "P14-", "Y15-", "E17Q", "Q44L", "I61T", "V70I", "Q77K"], "vpu": ["P3T", "L4T", "Q5L", "S8G", "V13I", "V26A", "L33W", "E62D", "Q66K", "N78H"]}, "labels": {"aa": "INT: E11D, A21T; RT-p51: M41L, D67N, N123S, E177D, V189M, L210W, T215Y, S322A, Y342F, T369A, Q428H; RT-p66: M41L, D67N, E177D, V189M, L210W, T215Y, S322A, Y342F, T369A, Q428H, I452M, V458I, T477A, V493A, K527M, I556V; gp120: T3A, E4G, R18E, H44Y, I56M, E59K, N64E, N102K, T104A, D105-, V106-, N108-, T110-, -111N, -112V, -113T, -114S, -115N, N128V, C129N, S130D, F131Y, T134N, T135K, E136-, I137-, R138-, D139-, K140-, K141-, K142-, K143-, E144-, Y145-, A146-, L147-, F148-, Y149-, R150-, D152-, V153-, V154-, P155-, I156-, N157-, N158-, Y163-, R164-, L165-, I166-, N167-, V170I, S171V, V173I, K174N, A176G, C177S, L198-, F205-, K212N, Q230K, R243K, E247D, S262E, R265K, I281T, F289L, A291T, D294A, H302Y, V305I, K307G, T308K, E309A, K319T, R322W, K323R, I332V, N334T, -368I, N369W, N379S, T380M, -382P, T387V, R391K, E414I, D418E, L424I, -433M, N435D, K448R, S453N; gp41: I4L, V7L, L9F, S42N, L54M, V72L, K77R, Q79R, E121D, D125H, N140S, N160D, D163S, K172R, Q213H, G226D, D230G, R233N, G286W, A289T, V321I, A325V, L340F; nef: P24R, H40F, I43L, S45T, A53E, R71K, G88S, K92R, Y115H, F120Y, Y135F, R151K, R178G, F202W; p1: S9H; p17: G69R, A83V, I104V, Q108K, Y132F; p24: D71E, E75D, I115V, E128D, T171A, N183G, A204G, A207Q, G225S; p6: E20N, A22G, -26K, S47N; p7: R11K; pro: L10I, V15I, A16E, K20R, E35D, I54V, E61D, V82A, L90M; rev: E10A, K32Q, A37T, I52L, S67P, L73F, C85S, N91D, G104V, C107N; tat: Q13H, K19Q, K29R, C31S, Y36I, A58T, I69V, G83D; vif: Y30H, V31I, A35T, R37G, R50K, V55I, E63K, H73Q, Q83H, Q105H, H127Q, K151R, T159A, S186A, H187I, T188-, M189-; vpr: E13G, P14-, Y15-, E17Q, Q44L, I61T, V70I, Q77K; vpu: P3T, L4T, Q5L, S8G, V13I, V26A, L33W, E62D, Q66K, N78H"}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000496", "node_attrs": {"div": 0.033729999999999996, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A214T", "T636C", "A653G", "-714C", "G716A", "A810G", "C830T", "T936C", "A941G", "C947T", "A968G", "T988C", "G1019A", "C1040T", "T1064G", "A1088C", "C1118T", "C1220T", "C1245T", "A1247G", "G1271A", "T1334C", "G1424A", "A1442G", "T1444C", "C1446T", "A1449G", "A1450G", "-1452G", "-1455G", "-1456C", "-1457A", "-1458G", "-1459C", "G1474A", "G1476A", "A1495G", "-1503A", "-1504T", "-1505T", "A1526G", "C1535T", "A1592G", "C1598T", "T1616A", "A1691G", "A1857T", "C2488T", "G3520A", "C3756G", "G3787C", "G3796A", "T3799C", "A3808G", "A3816G", "A3886G", "T3889C", "C4079T", "G4175A", "C4181A", "A4182C", "G4186A", "A4270C", "A4391T", "G4642A", "A4643T", "C4652A", "C4665T", "T4674C", "G4726A", "G4727T", "C5006T", "G5143A", "A5499G", "A5581G", "A5715G", "C5727A", "A5787T", "-5791G", "A5840T", "T5843G", "-5861T", "-6167A", "-6171T", "-6221A", "-6223A", "-6226A", "A6333-", "-6689A", "G7324C", "A7691C", "T7932C", "C8145G", "G8208A", "C8221A", "G8242C", "G8348A", "A8388G", "G8873A"], "INT": ["K14R", "Q136T"], "gp120": ["G307R", "K361E", "N418K"], "gp41": ["I210T", "A281G"], "nef": ["I16V"], "p2": ["V7A", "T8S", "N9G", "-10A", "-12A"], "p24": ["I27V", "M96I", "E187D"], "p7": ["R3K", "G4S", "K10R", "-13I"], "pro": ["K20I"], "tat": ["E2D", "S75P"], "vif": ["R19N", "N22K", "H27Y", "Y30H", "G37R", "R47N"], "vpu": ["L34R", "V65A", "-70E", "-71M", "V79G"]}, "labels": {"aa": "INT: K14R, Q136T; gp120: G307R, K361E, N418K; gp41: I210T, A281G; nef: I16V; p2: V7A, T8S, N9G, -10A, -12A; p24: I27V, M96I, E187D; p7: R3K, G4S, K10R, -13I; pro: K20I; tat: E2D, S75P; vif: R19N, N22K, H27Y, Y30H, G37R, R47N; vpu: L34R, V65A, -70E, -71M, V79G"}}, "children": [{"name": "NODE_0000497", "node_attrs": {"div": 0.04765, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A152-", "C153T", "C155T", "A278G", "-280G", "-304A", "-305T", "C426A", "A503C", "A516C", "A520G", "G629A", "T641G", "A642G", "A645G", "A647G", "G651A", "T662G", "G665C", "C668T", "A669C", "G677A", "G693A", "C694-", "T695G", "C731T", "T824C", "T890C", "A914G", "G987C", "T992A", "G1078C", "C1985A", "C2263T", "A2275G", "A2320T", "C2326T", "T2449C", "T2453C", "G2462A", "T2542A", "G2602A", "C2605A", "T2620C", "C2638T", "T2653C", "A2662G", "A2794G", "G2821A", "G2869A", "C3067A", "T3133C", "G3211A", "C3376T", "G3494A", "T3497A", "T3544G", "T4117C", "T4153A", "C4162A", "A4273G", "G4582A", "A4644G", "A4693G", "A4721C", "T4868C", "T4969G", "A5051C", "C5095T", "T5147A", "G5296A", "C5351T", "T5357G", "G5382T", "A5535G", "A5603-", "C5614G", "G5629A", "C5630G", "A5631C", "A5665G", "G5700A", "C5792A", "A5793G", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5923C", "G5955A", "T5959A", "C6134T", "T6184C", "-6220G", "-6222A", "A6278C", "A6285T", "G6292A", "G6336A", "C6369T", "A6500T", "T6511C", "C6777A", "A6812C", "G6821A", "T6829G", "-6833A", "-6834A", "A6881G", "-6955G", "-6959A", "-6960A", "-6985A", "-6986A", "-6987A", "-6988T", "-6990A", "-6991C", "-6993C", "C7012T", "G7044A", "A7094G", "A7095T", "C7096A", "C7101A", "A7106G", "T7107A", "G7633A", "C7688A", "C7699T", "T7774C", "G7964A", "G8130A", "G8159T", "T8279G", "A8386C", "A8405G", "A8540G", "G8588A", "T8701A", "A8739G", "T8835C"], "RT-p51": ["K174Q", "D324E"], "RT-p66": ["K174Q", "D324E", "V467I", "S468T", "H483Q"], "gp120": ["S34D", "-112N", "E144V", "T172V", "T216S", "E265K", "F325L", "-371T", "-377S", "-378N", "-380T", "R397N", "N414V"], "gp41": ["G221R", "R277L", "C326G"], "nef": ["E15A", "F120Y", "I168M"], "p17": ["I61L", "E62G", "D102E", "K103E", "I104V", "E106K", "N109K", "K110N", "K112Q", "A120K"], "p24": ["V86P", "H87Q", "G116A"], "rev": ["D7G", "R39K"], "tat": ["Q60H"], "vif": ["T20A", "E45D", "I128R"], "vpr": ["Y15N", "A93S"], "vpu": ["P3A", "A8S", "I20V", "E66K", "-69V", "-72G", "-75D"]}, "labels": {"aa": "RT-p51: K174Q, D324E; RT-p66: K174Q, D324E, V467I, S468T, H483Q; gp120: S34D, -112N, E144V, T172V, T216S, E265K, F325L, -371T, -377S, -378N, -380T, R397N, N414V; gp41: G221R, R277L, C326G; nef: E15A, F120Y, I168M; p17: I61L, E62G, D102E, K103E, I104V, E106K, N109K, K110N, K112Q, A120K; p24: V86P, H87Q, G116A; rev: D7G, R39K; tat: Q60H; vif: T20A, E45D, I128R; vpr: Y15N, A93S; vpu: P3A, A8S, I20V, E66K, -69V, -72G, -75D"}}, "children": [{"name": "results/subtype_trees/CRF27_cpx.nwk", "node_attrs": {"div": 0.09126999999999999, "clade_membership": {"value": "CRF27_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T214-", "-217A", "G256A", "A265G", "A386G", "A417C", "A425G", "A508T", "C510G", "A512C", "T525C", "A561C", "A571T", "A576C", "C577T", "T596C", "A604G", "G608A", "G650A", "G743A", "T788C", "T858C", "A866G", "C950T", "T1055C", "C1091T", "C1178T", "G1268A", "G1355A", "T1501C", "T1682C", "A1733G", "A1742G", "G1743A", "C1754T", "-1775C", "G1781A", "A1784-", "T1785-", "A1786-", "G1819A", "G1845A", "T1857G", "A1969G", "T1978G", "A1982G", "A1985G", "A1988G", "A1993C", "T1996C", "T2011C", "C2047T", "A2059G", "A2063T", "G2065A", "T2083C", "A2241G", "A2329G", "G2422A", "A2566G", "A2579T", "A2715C", "A2716T", "C2720T", "A2722G", "T2737C", "T2770C", "C2845A", "G2878A", "A3080G", "A3096T", "T3118A", "T3139C", "A3154G", "A3192G", "A3193G", "A3208G", "A3224T", "A3226G", "A3238G", "A3280G", "A3386C", "A3388G", "C3449A", "A3463G", "A3487G", "T3493G", "A3622G", "A3931G", "A4000G", "A4178G", "C4180T", "A4306G", "A4492T", "A4709G", "A4735G", "T4742C", "A4773G", "A4865G", "A5037G", "T5228C", "A5240G", "A5269G", "A5305G", "A5446C", "A5462G", "G5482C", "G5499A", "C5511T", "C5513T", "T5515C", "G5532A", "G5546C", "C5554T", "G5581A", "A5612T", "C5627T", "T5687A", "A5707T", "G5712A", "G5715A", "A5727T", "T5739G", "A5751C", "T5787C", "C5797-", "T5798-", "G5800T", "A5804C", "-5817G", "-5824C", "A5825C", "C5826T", "T5828A", "C5834T", "G5839A", "T5840A", "A5848G", "T5861A", "C5862A", "-5866A", "A5867G", "A5907G", "T5951C", "T5956G", "A5964T", "A5965G", "C6115T", "T6142A", "T6155C", "-6170G", "T6171C", "-6172A", "-6180A", "-6189A", "-6194A", "-6195C", "-6196C", "-6198C", "-6200A", "-6201T", "-6202C", "-6225G", "A6226G", "A6230C", "C6238T", "C6241T", "A6251G", "C6256T", "A6261C", "G6267A", "T6287C", "C6298T", "G6339C", "G6458A", "A6489C", "C6545T", "A6599C", "G6631C", "A6668T", "A6669C", "A6689G", "C6692A", "C6717T", "G6725A", "C6726G", "T6733A", "A6781G", "A6788G", "C6797T", "T6827C", "-6832C", "-6835C", "A6837T", "T6838G", "A6840G", "A6841C", "T6856G", "C6875A", "G6894C", "T6932A", "A6936C", "-6952C", "-6956A", "-6957A", "-6958T", "-6989A", "-6994T", "C7018G", "G7058A", "T7059C", "G7088A", "A7089G", "G7145C", "A7161G", "-7162T", "-7164C", "-7165T", "A7238C", "G7256A", "G7275A", "C7313A", "G7322A", "C7324G", "T7325A", "C7328T", "C7411T", "C7463A", "G7534A", "C7544T", "C7574A", "A7589G", "A7590C", "G7640A", "T7642C", "G7657A", "T7692A", "A7700G", "A7706C", "A7710C", "A7721G", "C7742A", "A7750G", "A7846G", "C7874T", "G7883A", "T7913C", "A7941C", "G7942A", "A7943G", "G7944A", "A7947G", "C7950T", "A7962G", "C8005G", "C8092T", "A8093G", "G8102-", "C8103-", "A8104-", "G8105-", "C8106-", "G8107-", "A8108-", "G8109-", "G8110-", "A8111-", "C8112-", "T8113-", "G8114-", "T8115-", "G8116-", "G8117-", "A8118-", "A8119-", "C8120-", "T8121-", "T8122-", "T8153C", "T8164C", "T8182A", "A8188G", "C8223T", "G8240A", "C8294A", "A8308G", "G8317A", "G8329A", "A8378G", "A8402G", "T8411C", "A8426T", "A8455C", "A8459G", "-8490G", "G8499C", "C8503A", "A8531G", "G8534A", "T8558C", "G8590C", "T8607C", "T8608A", "A8655C", "G8666T", "C8688A", "C8699T", "T8711C", "G8732A", "C8741G", "C8747T", "A8750C", "T8786A", "C8840T", "T8867C", "T8904C", "C8905G", "G8914T", "C8934A", "T8993C", "G8994C", "T9012C", "T9014C", "A9095G"], "INT": ["I135V", "T206S"], "RT-p51": ["K49R", "S162C", "E207A", "D250E", "I329V", "S359A", "K366R", "T369A", "T377S", "E404D", "K431Q"], "RT-p66": ["K49R", "S162C", "D250E", "I329V", "S359A", "K366R", "T377S", "K431Q", "L452I"], "gp120": ["S3K", "D4E", "K18R", "Y33H", "D34E", "K37V", "N57I", "-116T", "-119S", "-120I", "-121H", "-123K", "-124G", "I126L", "I133V", "E136A", "R138K", "K142Q", "Y145H", "I153V", "D157N", "N160T", "S162T", "D202N", "K212T", "I249L", "Q259H", "N272S", "I279V", "H280S", "A291S", "S306N", "Q315Y", "K319A", "K320Q", "N328M", "K329S", "N334K", "L341I", "I343V", "S347T", "S360T", "-372K", "-379S", "-385T", "V402T", "Q412R", "T416N", "-433N", "-436G", "N437T", "K462Q", "V468I"], "gp41": ["L4I", "V7M", "F8I", "L9F", "L54M", "L81F", "L91I", "N96A", "D113N", "I130Q", "N133E", "I135L", "E136T", "N140D", "Q147K", "V194I", "L209H", "Q213P", "R214E", "E215G", "P216L", "E220G", "G225E", "I264V", "R269H", "T270S", "S302N", "T307V", "E313N", "H331N"], "nef": ["I20M", "E28D", "D38A", "T51N", "L58V", "G83A", "F85V", "F89H", "K105Q", "H116N", "I133E", "F143Y", "C163S", "S188R", "R191L", "R192K", "L198M"], "p17": ["K28Q", "L46I", "Q59D", "T81L", "E93D", "A118E"], "p24": ["E98D", "G225S"], "p6": ["A22T", "L35P", "Y36-", "S47N", "*50L"], "p7": ["I12T"], "pro": ["G16E", "I20R", "R57K", "D60E", "I62V", "L63V", "I64V", "M89L"], "rev": ["G6E", "E11Q", "E32R", "H53D", "A68T", "L73F", "L78I", "H82C", "S112T", "T114A"], "tat": ["K24Q", "K29R", "V36L", "S46F", "H60Y", "P73S", "L74I", "R78Q", "G79R", "P81S", "K85E"], "vif": ["K36R", "K50R", "K63E", "M109I", "H127Y"], "vpr": ["I46V"], "vpu": ["A7V", "A19V", "F27Y", "R34L", "K35R", "D44E", "E48D", "-73P", "-74H", "P76L", "V78N", "D80N", "N81D"]}, "labels": {"aa": "INT: I135V, T206S; RT-p51: K49R, S162C, E207A, D250E, I329V, S359A, K366R, T369A, T377S, E404D, K431Q; RT-p66: K49R, S162C, D250E, I329V, S359A, K366R, T377S, K431Q, L452I; gp120: S3K, D4E, K18R, Y33H, D34E, K37V, N57I, -116T, -119S, -120I, -121H, -123K, -124G, I126L, I133V, E136A, R138K, K142Q, Y145H, I153V, D157N, N160T, S162T, D202N, K212T, I249L, Q259H, N272S, I279V, H280S, A291S, S306N, Q315Y, K319A, K320Q, N328M, K329S, N334K, L341I, I343V, S347T, S360T, -372K, -379S, -385T, V402T, Q412R, T416N, -433N, -436G, N437T, K462Q, V468I; gp41: L4I, V7M, F8I, L9F, L54M, L81F, L91I, N96A, D113N, I130Q, N133E, I135L, E136T, N140D, Q147K, V194I, L209H, Q213P, R214E, E215G, P216L, E220G, G225E, I264V, R269H, T270S, S302N, T307V, E313N, H331N; nef: I20M, E28D, D38A, T51N, L58V, G83A, F85V, F89H, K105Q, H116N, I133E, F143Y, C163S, S188R, R191L, R192K, L198M; p17: K28Q, L46I, Q59D, T81L, E93D, A118E; p24: E98D, G225S; p6: A22T, L35P, Y36-, S47N, *50L; p7: I12T; pro: G16E, I20R, R57K, D60E, I62V, L63V, I64V, M89L; rev: G6E, E11Q, E32R, H53D, A68T, L73F, L78I, H82C, S112T, T114A; tat: K24Q, K29R, V36L, S46F, H60Y, P73S, L74I, R78Q, G79R, P81S, K85E; vif: K36R, K50R, K63E, M109I, H127Y; vpr: I46V; vpu: A7V, A19V, F27Y, R34L, K35R, D44E, E48D, -73P, -74H, P76L, V78N, D80N, N81D", "clade": "CRF27_cpx"}}, "children": [{"name": "AM851091", "node_attrs": {"div": 0.13843, "accession": "AM851091", "clade_membership": {"value": "CRF27_cpx"}, "country": {"value": "FR"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04CD_FR_KZS"}, "LANL_subtype": {"value": "CRF27_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-152A", "-166G", "-167G", "A215-", "G279A", "A286G", "G386A", "A412G", "C417A", "T467C", "C471A", "T485C", "A492G", "A500T", "C507T", "A518G", "G519A", "A530G", "A540C", "C561A", "A569G", "G604A", "G614T", "G653A", "A654G", "T668G", "C688A", "C691A", "A692G", "A693-", "G695-", "G696-", "A697-", "C698-", "A699-", "C700-", "A701-", "A706G", "T718C", "A743T", "G755A", "A774T", "C788T", "A797C", "G810A", "G821A", "C827T", "A978C", "A980G", "C988A", "A992G", "C1005G", "A1019G", "G1064A", "A1079G", "G1090A", "T1100C", "A1112G", "G1139A", "A1226G", "G1247A", "A1250G", "G1256A", "A1271G", "G1290A", "A1291G", "G1313A", "C1316T", "A1397G", "C1403T", "G1404A", "C1406T", "T1421G", "C1456T", "G1458A", "A1476G", "T1484C", "C1492A", "G1495A", "C1501T", "A1588G", "G1589A", "C1613T", "C1650T", "T1653C", "G1661A", "G1687A", "T1722C", "T1728A", "G1731A", "G1732T", "C1749T", "C1753A", "G1760A", "C1768T", "T1783C", "C1795T", "A1840G", "C1914A", "A1927G", "G1972A", "C1979G", "G1985A", "T1986C", "C1996T", "A2023G", "A2161G", "A2198G", "C2199T", "T2269A", "A2286G", "G2411A", "G2459A", "A2462G", "C2485T", "G2566A", "A2641G", "G2662A", "A2677G", "T2716C", "C2737T", "C2740T", "A2743G", "C2839A", "T2917C", "A2937G", "A2956G", "C2975T", "C2978T", "C2985A", "G3010A", "A3027G", "A3043G", "C3055T", "A3067C", "T3096A", "A3103G", "G3154A", "A3163G", "C3171G", "G3188A", "G3192A", "A3200G", "G3209A", "A3211G", "A3214G", "T3224A", "G3226A", "A3258G", "A3307T", "A3367G", "T3412C", "T3424C", "T3469C", "G3477A", "A3490G", "A3494G", "G3553A", "A3621G", "G3631A", "A3643G", "G3667A", "A3676G", "G3718A", "A3745G", "C3751T", "C3773T", "T3844C", "C3908T", "G3931A", "A3937G", "C3940T", "A3952G", "A4003G", "A4057G", "T4075C", "A4076C", "G4151A", "A4153G", "A4175G", "A4176G", "C4182A", "A4222G", "G4228A", "C4270T", "G4273A", "A4363G", "C4396T", "A4407G", "C4412T", "T4435C", "G4459A", "A4475G", "A4498G", "A4567G", "A4577C", "G4581A", "G4583C", "T4606G", "G4677A", "T4678A", "T4679G", "G4693A", "A4695G", "T4701C", "T4702A", "G4709A", "A4725C", "G4735A", 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"P285-", "G286-", "Q287-", "A288-", "F289-", "Y290V", "T292L", "D294P", "H302Y", "T308K", "N312G", "A318V", "R322G", "K323R", "-326N", "I332N", "K334Q", "S336P", "V343I", "N358D", "T360K", "-368N", "N369K", "-370S", "K372N", "-373G", "-374T", "-375W", "-376T", "S377K", "-381T", "-382G", "-383E", "-384T", "T385G", "P389Q", "M406I", "V414I", "N416Q", "K418E", "L424I", "G430R", "G431H", "N433H", "N434T", "G436E", "E438-", "T439-", "D446N", "R448K", "S453N", "Q462E", "K472R"], "gp41": ["M7L", "Q29H", "D109E", "E110A", "N114K", "D129K", "A189T", "L191F", "T208I", "P219L", "D230G", "R231K", "D232S", "N239S", "S256L", "R261K", "F263C", "V264A", "H269R", "S270T", "L290Q", "V311T", "V322A", "L330I", "F340A", "L345Q"], "nef": ["K7Q", "I10P", "R19K", "T23A", "S45N", "S46N", "E64D", "Y102W", "Q105K", "Y135F", "F139L", "Y143F", "C169S", "Q170L", "K192R", "I194V", "M198K"], "p1": ["P7S", "S8P"], "p17": ["K26R", "Q28K", "L31M", "T53A", "E55D", "Q58L", "G62R", "K69Q", "Y79F", "I107V", "S111R", "A119E", "K120-", "D121-", "T122-", "N124S", "V128A"], "p2": ["A11V", "A12T"], "p24": ["Q4H", "I15L", "V27I", "P86Q", "P92A", "I96M", "D98E", "S120N", "D187S"], "p6": ["S3N", "F15L", "F17I", "G18M", "I21M", "P23S", "S24Y", "P30L", "T39V"], "p7": ["S4G", "R10K", "T12I", "K41R"], "pro": ["P39Q", "K57R", "Q61E", "V63T", "E65D"], "rev": ["S5N", "G7D", "V16I", "Q24K", "R50E", "E57K", "I59V", "T68A", "F73L", "Q74P", "I78L", "G99R"], "tat": ["I8L", "L36H", "S62N", "P70Q", "K71E", "N80D", "P84S"], "vif": ["V7G", "V31K", "R36K", "R37G", "F39H", "N47H", "R50K", "H73Q", "E78D", "E134D", "Q136P", "K141Q", "T159I", "P162S", "V170T", "H192Q"], "vpr": ["L20I", "H45Y", "E58V", "R85P", "S93P", "S96P"], "vpu": ["Q2I", "A3S", "E5K", "I6T", "V7I", "V10A", "I17L", "K38R", "I43L", "D48E", "E58D", "K66R", "W77G", "G79D"]}, "labels": {"aa": "INT: I101L, V126M, N134G, T136K, K211R, I234V, I268L, R269K, D270H; RT-p51: T35V, K64R, V106I, E122K, D248E, K281R, P294S, A297E, K311R, E324D, A359C, V365I, R366K, V372M, S377T, K388R; RT-p66: T35V, K64R, V106I, E122K, E207A, D248E, K281R, P294S, A297E, K311R, E324D, A359C, V365I, R366K, T369A, V372M, S377T, K388R, E404D, R461K, I467V, Q509R; gp120: A2V, K3Q, E4G, P15S, D19E, V37A, I57L, E59D, K69R, V73A, K93R, L97F, -105D, -106V, -109T, -111R, N112I, N113H, -114D, -115S, -117N, -118T, -122T, K123T, G124E, V144L, H145Q, Y149E, K150S, I156M, N158K, N159S, T160S, V180T, Y189F, N204K, K224R, Q230H, R245K, A253T, S272F, V279-, S280-, I281-, G284-, P285-, G286-, Q287-, A288-, F289-, Y290V, T292L, D294P, H302Y, T308K, N312G, A318V, R322G, K323R, -326N, I332N, K334Q, S336P, V343I, N358D, T360K, -368N, N369K, -370S, K372N, -373G, -374T, -375W, -376T, S377K, -381T, -382G, -383E, -384T, T385G, P389Q, M406I, V414I, N416Q, K418E, L424I, G430R, G431H, N433H, N434T, G436E, E438-, T439-, D446N, R448K, S453N, Q462E, K472R; gp41: M7L, Q29H, D109E, E110A, N114K, D129K, A189T, L191F, T208I, P219L, D230G, R231K, D232S, N239S, S256L, R261K, F263C, V264A, H269R, S270T, L290Q, V311T, V322A, L330I, F340A, L345Q; nef: K7Q, I10P, R19K, T23A, S45N, S46N, E64D, Y102W, Q105K, Y135F, F139L, Y143F, C169S, Q170L, K192R, I194V, M198K; p1: P7S, S8P; p17: K26R, Q28K, L31M, T53A, E55D, Q58L, G62R, K69Q, Y79F, I107V, S111R, A119E, K120-, D121-, T122-, N124S, V128A; p2: A11V, A12T; p24: Q4H, I15L, V27I, P86Q, P92A, I96M, D98E, S120N, D187S; p6: S3N, F15L, F17I, G18M, I21M, P23S, S24Y, P30L, T39V; p7: S4G, R10K, T12I, K41R; pro: P39Q, K57R, Q61E, V63T, E65D; rev: S5N, G7D, V16I, Q24K, R50E, E57K, I59V, T68A, F73L, Q74P, I78L, G99R; tat: I8L, L36H, S62N, P70Q, K71E, N80D, P84S; vif: V7G, V31K, R36K, R37G, F39H, N47H, R50K, H73Q, E78D, E134D, Q136P, K141Q, T159I, P162S, V170T, H192Q; vpr: L20I, H45Y, E58V, R85P, S93P, S96P; vpu: Q2I, A3S, E5K, I6T, V7I, V10A, I17L, K38R, I43L, D48E, E58D, K66R, W77G, G79D"}}}, {"name": "CRF27_cpx_NODE_0000001", "node_attrs": {"div": 0.09158999999999999, "clade_membership": {"value": "CRF27_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T3170G", "G6466T", "G6779C", "C8415G"], "RT-p51": ["Q334L"], "RT-p66": ["Q334L"], "gp41": ["E137K", "A267L", "A268G", "V271S", "E272L", "L273K", "L274G", "G275L"], "p17": ["Q90R"], "rev": ["C85-", "S86-", "E87-", "D88-", "C89-", "G90-", "T91-", "I102T"], "tat": ["Y47H"]}, "labels": {"aa": "RT-p51: Q334L; RT-p66: Q334L; gp41: E137K, A267L, A268G, V271S, E272L, L273K, L274G, G275L; p17: Q90R; rev: C85-, S86-, E87-, D88-, C89-, G90-, T91-, I102T; tat: Y47H"}}, "children": [{"name": "MN116204", "node_attrs": {"div": 0.13843, "accession": "MN116204", "clade_membership": {"value": "CRF27_cpx"}, "country": {"value": "CD"}, "date": {"value": 2003.0}, "Strain_name": {"value": "CG_0077_01"}, "LANL_subtype": {"value": "CRF27_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T128G", "G130C", "A132T", "C134-", "T135-", "A136-", "G137-", "A138-", "G139-", "A140-", "T141-", "C142-", "C143-", "C144-", "T145-", "C146-", "A147-", "G148-", "A149-", "C150-", "C151-", "T153-", "T154-", "T155-", 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"T6340G", "A6394G", "T6418C", "T6427A", "C6446T", "G6463A", "C6469T", "A6471C", "C6496T", "G6532A", "G6550A", "T6562C", "C6599A", "G6611T", "C6612T", "A6616G", "C6618A", "T6643G", "A6647C", "A6648C", "A6653G", "A6654T", "C6667T", "G6681T", "A6683G", "A6686G", "C6758T", "G6774C", "A6776G", "A6780T", "G6781A", "G6788A", "A6789C", "T6797G", "A6801G", "G6803A", "G6809A", "C6812A", "A6818G", "A6820C", "C6827A", "G6829-", "C6832A", "C6850T", "A6855G", "T6860G", "A6877G", "G6905A", "T6916C", "G6935C", "A6937T", "A6944C", "A6957C", "A6989G", "C6993G", "-6995G", "-6996A", "-6997C", "-6998A", "-6999G", "-7000A", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "-7006C", "-7007A", "-7008C", "-7009T", "C7014T", "G7026A", "A7036G", "G7040A", "A7044G", "C7045A", "G7054A", "C7078T", "A7090G", "T7095C", "T7099C", "A7100G", "G7106A", "C7127A", "G7142A", "G7146C", "A7148G", "A7149G", "A7158G", "A7163T", "T7192C", "G7309A", "T7604A", "C7605T", "T7606G", "T7622A", "T7624A", "A7633C", "C7651A", "T7666G", "A7688G", "A7696T", "A7701G", "G7709A", "G7712A", "A7744G", "G7753A", "C7792A", "A7800G", "T7801A", "T7825C", "A7826C", "T7827A", "A7834C", "G7835A", "G7873A", "T7876G", "A7937C", "A7944C", "G7947A", "A7948C", "G7961A", "A7964G", "G7992A", "G8019A", "C8047T", "G8050A", "C8065T", "G8079A", "C8080A", "T8092A", "G8141A", "A8154T", "T8159G", "G8170A", "T8197C", "T8203C", "T8205C", "A8222G", "G8255A", "A8263G", "G8264A", "G8267A", "A8288G", "A8297G", "G8308A", "T8332A", "C8386A", "G8388A", "G8402A", "C8406A", "C8412G", "T8414A", "C8419T", "A8420T", "T8426A", "T8451C", "C8471A", "T8501A", "C8514G", "A8534T", "C8552T", "G8554A", "C8609T", "C8640A", "A8642G", "A8647G", "C8648G", "A8652C", "T8740A", "T8770A", "A8793G", "A8798G", "G8805A", "C8825T", "C8831A", "A8859G", "G8864C", "G8868A", "A8869C", "A8873G", "G8875A", "G8894A", "G8917A", "T8923G", "G8945T", "C8993T", "C9108T", "T9109G"], "INT": ["S17N", "L28I", "I31V", "K34R", "M50I", "A124S", "V165I", "I204M", "A205-", "K211-", "D270E"], "RT-p51": ["K103R", "D123S", "C162S", "T165I", "Q174K", "G196E", "A200T", "A207D", "P272A", "K275Q", "A286T", "V371L", "K395R", "V435A"], "RT-p66": ["K103R", "D123S", "C162S", "T165I", "Q174K", "G196E", "A200T", "E207D", "P272A", "K275Q", "A286T", "T369A", "V371L", "K395R", "E404D", "V435A", "V531I", "S554N"], "gp120": ["N5E", "R18K", "D19E", "D21T", "L58M", "E59G", "K69T", "N102T", "-105E", "-106A", "-107K", "-109N", "T110G", "-111T", "-114A", "-115T", "-122V", "L126V", "K127Q", "K138N", "K143Q", "V144I", "K150R", "L151V", "V153M", "P155S", "N158E", "N159T", "T160I", "N161G", "N206T", "L249I", "A253F", "T255N", "K265P", "N267V", "R276I", "K277E", "S278G", "A288V", "S291R", "H302Y", "N306S", "R307A", "T308E", "E309L", "N312T", "Y315E", "K316R", "V317I", "A319T", "Q320K", "R322G", "L325I", "K334R", "S336A", "I341M", "G351R", "E361P", "N364H", "N369-", "-373N", "-374D", "-375S", "-376D", "N378H", "T380W", "-381M", "-382K", "-383N", "-384D", "T387I", "R391K", "V396I", "N397R", "V414A", "N416E", "L425I", "G430S", "G431P", "N432G", "N435S", "T437S", "K472R"], "gp41": ["S101M", "S107T", "E110D", "D121E", "D129E", "E133G", "D163E", "N166R", "I175Q", "V178I", "H209L", "N212H", "E214A", "G215D", "G220R", "R221G", "E225G", "N251S", "R259Q", "F263L", "E280K", "Y284L", "W286G", "I301T", "V318I", "V321I", "V322I", "I329V", "I332V"], "nef": ["A15E", "V16I", "M20I", "T23A", "P24E", "P25G", "A26-", "A27-", "D28-", "G29-", "N51T", "R71K", "V85F", "L100M", "Y102W", "K104Q", "E108D", "K151E", "E155K", "S163R", "M173V", "E174D", "E176T", "R178K", "I194R", "E201D"], "p1": ["N9H"], "p17": ["L61I", "L75F", "K76R", "Y79F", "I107M", "N110S", "E118A", "K120M", "D121N"], "p2": ["A7V", "S8T"], "p24": ["V36I", "S41T", "T54S", "T58I", "T72A", "E75D", "P86Q", "P92A", "R100T", "Q112A", "A116R", "E180D", "T210S", "S225G"], "p6": ["I21T", "T22P", "P23S", "S24P", "P25-", "P30L", "T39A", "S51L"], "pro": ["V13I", "E65D", "K70R"], "rev": ["R4N", "S8R", "A15T", "K20R", "K30T", "R32S", "T34P", "R38Q", "K39R", "P67S", "C82S", "G98E", "V104G", "S106P", "A108T", "*117Q"], "tat": ["D2E", "R29Q", "C31S", "K51Q", "R53G", "Q54K", "G61N", "S73P", "I74L", "Q76H", "N80T"], "vif": ["V7G", "F39R", "N47Y", "I51V", "H73L", "R93K", "S116A", "Y127H", "R128K", "T151A", "T155N", "T159I"], "vpr": ["H40L", "N48D", "E58G", "I83V", "I84V", "S93A"], "vpu": ["Q2I", "A3N", "E5Q", "S8G", "I13V", "I18L", "V19A", "V26A", "L33W", "L34S", "K37Q", "K38R", "L76I", "G79I", "N80D"]}, "labels": {"aa": "INT: S17N, L28I, I31V, K34R, M50I, A124S, V165I, I204M, A205-, K211-, D270E; RT-p51: K103R, D123S, C162S, T165I, Q174K, G196E, A200T, A207D, P272A, K275Q, A286T, V371L, K395R, V435A; RT-p66: K103R, D123S, C162S, T165I, Q174K, G196E, A200T, E207D, P272A, K275Q, A286T, T369A, V371L, K395R, E404D, V435A, V531I, S554N; gp120: N5E, R18K, D19E, D21T, L58M, E59G, K69T, N102T, -105E, -106A, -107K, -109N, T110G, -111T, -114A, -115T, -122V, L126V, K127Q, K138N, K143Q, V144I, K150R, L151V, V153M, P155S, N158E, N159T, T160I, N161G, N206T, L249I, A253F, T255N, K265P, N267V, R276I, K277E, S278G, A288V, S291R, H302Y, N306S, R307A, T308E, E309L, N312T, Y315E, K316R, V317I, A319T, Q320K, R322G, L325I, K334R, S336A, I341M, G351R, E361P, N364H, N369-, -373N, -374D, -375S, -376D, N378H, T380W, -381M, -382K, -383N, -384D, T387I, R391K, V396I, N397R, V414A, N416E, L425I, G430S, G431P, N432G, N435S, T437S, K472R; gp41: S101M, S107T, E110D, D121E, D129E, E133G, D163E, N166R, I175Q, V178I, H209L, N212H, E214A, G215D, G220R, R221G, E225G, N251S, R259Q, F263L, E280K, Y284L, W286G, I301T, V318I, V321I, V322I, I329V, I332V; nef: A15E, V16I, M20I, T23A, P24E, P25G, A26-, A27-, D28-, G29-, N51T, R71K, V85F, L100M, Y102W, K104Q, E108D, K151E, E155K, S163R, M173V, E174D, E176T, R178K, I194R, E201D; p1: N9H; p17: L61I, L75F, K76R, Y79F, I107M, N110S, E118A, K120M, D121N; p2: A7V, S8T; p24: V36I, S41T, T54S, T58I, T72A, E75D, P86Q, P92A, R100T, Q112A, A116R, E180D, T210S, S225G; p6: I21T, T22P, P23S, S24P, P25-, P30L, T39A, S51L; pro: V13I, E65D, K70R; rev: R4N, S8R, A15T, K20R, K30T, R32S, T34P, R38Q, K39R, P67S, C82S, G98E, V104G, S106P, A108T, *117Q; tat: D2E, R29Q, C31S, K51Q, R53G, Q54K, G61N, S73P, I74L, Q76H, N80T; vif: V7G, F39R, N47Y, I51V, H73L, R93K, S116A, Y127H, R128K, T151A, T155N, T159I; vpr: H40L, N48D, E58G, I83V, I84V, S93A; vpu: Q2I, A3N, E5Q, S8G, I13V, I18L, V19A, V26A, L33W, L34S, K37Q, K38R, L76I, G79I, N80D"}}}, {"name": "AJ404325", "node_attrs": {"div": 0.13047999999999998, "accession": "AJ404325", "clade_membership": {"value": "CRF27_cpx"}, "country": {"value": "CD"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97CDKTB49"}, "LANL_subtype": {"value": "CRF27_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T355A", "A369C", "G394A", "G395T", "G428A", "C512T", "C539T", "T560C", "T571A", "A661G", "C669A", "C688A", "-694A", "C700A", "A701G", "A706T", "G709A", "C719T", "G770A", "T777A", "C974T", "T979C", "A1002G", "C1013G", "A1025C", "C1088T", "G1090A", "C1094T", "G1199A", "T1253A", "A1263T", "G1339A", "C1350T", "A1367G", "G1394A", "A1400G", "G1404A", "A1424G", "G1430A", "A1445C", "G1498A", "A1567G", "A1580G", "C1613T", "A1701T", "G1725A", "A1740G", "G1760A", "C1782G", "T1790C", "G1794A", "A1804G", "G1852A", "G1857A", "A1903C", "G1968A", "C1993A", "G2074A", "T2101C", "T2104C", "A2140G", "T2171C", "A2191G", "A2311G", "A2498G", "G2518A", "T2536C", "A2563C", "G2610T", "T2657C", "G2675C", "G2686A", "A2713G", "G2714A", "G2725A", "A2755C", "A2815G", "C2828A", "C2839A", "G2980A", "G3004A", "G3053A", "A3130G", "A3230T", "G3250A", "A3292G", "T3450A", "G3477A", "G3544A", "C3545T", "A3592C", "T3613A", "C3623T", "A3655G", "A3724G", "A3727T", "A3733G", "G3770A", "C3787T", "G3808T", "G3825C", "C3857T", "A3934G", "G4046A", "T4085C", "C4132A", "G4145A", "T4165C", "T4216C", "T4282A", "C4396T", "A4555C", "G4581A", "G4644A", "A4646T", "C4674T", "G4677A", "A4697G", "A4774T", "A4784G", "G4829A", "G4859A", "A4861G", "A4900G", "T4912C", "C4965T", "C4976T", "G4981A", "T4991C", "G5030A", "C5034T", "A5056G", "T5062C", "G5086A", "A5096G", "A5134T", "A5187C", "G5226A", "C5242T", "C5294T", "A5296G", "C5333T", "A5336C", "G5357A", "C5397T", "T5436A", "G5463C", "T5472C", "C5478T", "T5484G", "G5538A", "A5545G", "A5547G", "G5548A", "G5599-", "-5603T", "A5611C", "T5612A", "T5658C", "C5663T", "G5699A", "A5717G", "T5731A", "T5807G", "-5809C", "-5810T", "-5811T", "T5836G", "T5844C", "G5845A", "A5896G", "T5929C", "A5935C", "G5954A", "A5955C", "C6004T", "T6134C", "C6139T", "C6145A", "C6160T", "A6173-", "A6179G", "A6180C", "T6181A", "C6184A", "C6190T", "A6191C", "-6208A", "-6209A", "-6210T", "-6211G", "-6212A", "-6213C", "-6214A", "-6215A", "-6216C", "-6217A", "-6219T", "A6253G", "A6275C", "C6289T", "G6303A", "C6318A", "A6324G", "A6329G", "-6333C", "A6349G", "A6352C", "T6395A", "T6427C", "C6446T", "A6465C", "G6526A", "G6547A", "G6566T", "A6578G", "A6584G", "C6591T", "G6605A", "G6638A", "A6648T", "A6684C", "C6721A", "A6723T", "T6724C", "A6725T", "G6726A", "A6727T", "C6729G", "G6732C", "G6771A", "G6774A", "A6777C", "A6785G", "T6787G", "A6799T", "T6815C", "-6830A", "-6831A", "C6835G", "T6837G", "G6838C", "A6842T", "A6848T", "T6851-", "T6852-", "T6853-", "G6856A", "G6905A", "G6906T", "A6907G", "G6935A", "C6938T", "A6959G", "-6961T", "-6962A", "-6963C", "-6964C", "-6965A", "-6966C", "-6967T", "-6968A", "-6969A", "-6970G", "-6971G", "-6972G", "-6973C", "-6974A", "-6975G", "-6976C", "-6977A", "-6978A", "-6979T", "-6980G", "-6981A", "-6982G", "-6983A", "-6984C", "A6985C", "A6990G", "C6991T", "A7033G", "A7065G", "C7078T", "A7090T", "A7102T", "A7107C", "A7136C", "C7145G", "T7172C", "G7190A", "A7216G", "T7217C", "C7250T", "G7269A", "G7276A", "G7291C", "T7321C", "G7366A", "A7402G", "A7471G", "C7474T", "A7540G", "C7597T", "T7630G", "A7646C", "G7668A", "A7689G", "A7690C", "C7710T", "G7712A", "C7747T", "G7753A", "G7807A", "C7843G", "T7866G", "T7875G", "C7913G", "C7926T", "T7929A", "A7948T", "G7952A", "A7971G", "G7977A", "T8007C", "A8014G", "T8016C", "G8019A", "C8037T", "G8050A", "G8055A", "C8065T", "C8080A", "C8165A", "T8167C", "G8173A", "T8176C", "A8184G", "G8328T", "A8342C", "A8348G", "T8366A", "G8387T", "G8405A", "G8407A", "C8416T", "A8458G", "A8469G", "C8480A", "G8490A", "C8494A", "G8526C", "T8595G", "T8597C", "C8609T", "T8644C", "T8770A", "A8793C", "G8814A", "A8827G", "C8828T", "C8832T", "G8846A", "A8869G", "A8873C", "A8874G", "G8882A", "T8887A", "A8892G", "A8893T", "G8917A", "A8922C", "T8935C", "T9028G", "C9181T"], "INT": ["E11D", "S17T", "A91T", "S119R", "A124T", "R269K"], "RT-p51": ["D123N", "I135V", "R172I", "Y188H", "E194Q", "A207T", "K220N", "Q245K", "D248E", "D320N", "A369T", "S379C", "D404E"], "RT-p66": ["D123N", "I135V", "R172I", "Y188H", "E194Q", "E207T", "K220N", "Q245K", "D248E", "D320N", "S379C", "I452K", "R461K", "P510S", "V559I"], "gp120": ["N5D", "E34T", "-109A", "T110N", "-111A", "N112T", "-114N", "-115H", "K141Q", "P155Q", "N157G", "N159D", "S181T", "N204T", "A238S", "I242V", "I244V", "S246F", "D251N", "E262K", "K265I", "K277T", "Q287R", "F289G", "Y290D", "S291I", "T292I", "G296-", "D297-", "I298-", "R307E", "E309Q", "N311E", "N312D", "M328K", "T330S", "I331S", "G351M", "E361T", "-368N", "N369D", "-370T", "-376G", "S379E", "-381N", "-382S", "Q404R", "R412S", "K418A", "F440L", "D446N", "E479D"], "gp41": ["D109E", "M115L", "R122K", "D129S", "T136V", "F188C", "L191C", "L204V", "T208I", "D217N", "E223G", "D230G", "I235T", "V238A", "A245V", "R276K", "Y284H", "L288I", "Q294R", "V307I", "R342I"], "nef": ["S8R", "R22Q", "P25V", "K39R", "I43V", "S46R", "A50T", "V58L", "E62Q", "I101T", "E108D", "E133V", "K151Q", "E158K", "N162S", "M168I", "E176G", "E177D", "R178G", "M182K", "K184V", "I194L", "M198T"], "p17": ["V7E", "K12Q", "R20H", "L31I", "I46L", "Q58L", "K76Q", "D93E", "K109R", "Q112K", "T122K", "N124I", "S125N"], "p24": ["S16T", "L83T", "I91V", "S120N", "T178S", "R203K", "P207S"], "p6": ["T8S", "G16R", "I21V", "P35V", "K42R"], "p7": ["Q9P", "R11K", "K34R"], "pro": ["R20K", "E35D"], "rev": ["S8N", "Q11R", "T34S", "R35Q", "S56G", "S106H", "S107P", "V109I"], "tat": ["R29S", "T57A", "A58T", "N80V"], "vif": ["A20T", "H30Y", "V31I", "E63V", "K92R", "Q105R", "I109T", "R132K", "T151A", "K157R", "R167K", "H183L"], "vpr": ["N28T", "G41D", "Q77H"], "vpu": ["R31K", "K37R", "L42I", "K66R", "W77G"]}, "labels": {"aa": "INT: E11D, S17T, A91T, S119R, A124T, R269K; RT-p51: D123N, I135V, R172I, Y188H, E194Q, A207T, K220N, Q245K, D248E, D320N, A369T, S379C, D404E; RT-p66: D123N, I135V, R172I, Y188H, E194Q, E207T, K220N, Q245K, D248E, D320N, S379C, I452K, R461K, P510S, V559I; gp120: N5D, E34T, -109A, T110N, -111A, N112T, -114N, -115H, K141Q, P155Q, N157G, N159D, S181T, N204T, A238S, I242V, I244V, S246F, D251N, E262K, K265I, K277T, Q287R, F289G, Y290D, S291I, T292I, G296-, D297-, I298-, R307E, E309Q, N311E, N312D, M328K, T330S, I331S, G351M, E361T, -368N, N369D, -370T, -376G, S379E, -381N, -382S, Q404R, R412S, K418A, F440L, D446N, E479D; gp41: D109E, M115L, R122K, D129S, T136V, F188C, L191C, L204V, T208I, D217N, E223G, D230G, I235T, V238A, A245V, R276K, Y284H, L288I, Q294R, V307I, R342I; nef: S8R, R22Q, P25V, K39R, I43V, S46R, A50T, V58L, E62Q, I101T, E108D, E133V, K151Q, E158K, N162S, M168I, E176G, E177D, R178G, M182K, K184V, I194L, M198T; p17: V7E, K12Q, R20H, L31I, I46L, Q58L, K76Q, D93E, K109R, Q112K, T122K, N124I, S125N; p24: S16T, L83T, I91V, S120N, T178S, R203K, P207S; p6: T8S, G16R, I21V, P35V, K42R; p7: Q9P, R11K, K34R; pro: R20K, E35D; rev: S8N, Q11R, T34S, R35Q, S56G, S106H, S107P, V109I; tat: R29S, T57A, A58T, N80V; vif: A20T, H30Y, V31I, E63V, K92R, Q105R, I109T, R132K, T151A, K157R, R167K, H183L; vpr: N28T, G41D, Q77H; vpu: R31K, K37R, L42I, K66R, W77G"}}}]}]}, {"name": "results/subtype_trees/CRF13_cpx.nwk", "node_attrs": {"div": 0.09082, "clade_membership": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G10A", "C96T", "A133T", "-166G", "-167G", "T213C", "G256-", "T258C", "A261G", "A286G", "G378A", "A398G", "G455A", "A461G", "G495A", "C503T", "A518G", "A527G", "G534T", "A540C", "A557G", "A654G", "T655C", "-694G", "C698T", "A699G", "C700A", "G712A", "C722T", "A869G", "C872T", "A1002C", "T1052C", "G1077A", "T1229C", "T1280C", "G1430A", "G1493A", "G1495A", "T1646C", "A1657G", "G1691A", "A1770-", "A1771-", "G1772-", "G1773-", "A1774-", "G1794A", "T1797G", "T1828A", "A1840G", "G1848A", "G1858A", "T1864C", "G1898A", "A1920G", "C1979A", "A1981C", "A1984G", "T1986G", "T1987C", "T1997G", "G1998A", "T1999G", "G2027A", "G2155A", "T2206C", "C2281T", "G2530A", "A2542G", "T2632G", "C2635T", "C2694A", "A2698G", "A2699G", "G2707A", "A2710G", "G2714A", "A2716G", "A2727G", "C2749T", "T2776C", "C2831T", "G2914A", "G2998A", "G3016A", "C3023T", "A3034T", "A3046C", "T3059G", "C3060A", "A3061G", "G3094A", "C3100A", "T3132A", "A3167G", "T3181A", "T3197C", "A3217G", "A3218G", "A3220G", "A3229G", "C3252T", "A3268C", "A3276G", "A3293G", "C3294T", "A3334T", "G3340A", "T3368C", "A3378G", "A3387C", "G3391A", "G3398C", "T3414A", "T3445A", "C3449T", "A3457G", "G3483A", "G3491A", "T3517C", "A3630G", "G3664A", "T3668C", "A3676G", "C3751T", "G3756A", "A3772G", "T3793A", "A3866G", "C3892T", "T3904C", "C4138T", "G4156A", "C4204T", "T4391A", "T4405A", "G4549A", "A4692G", "A4784G", "G4818A", "A4847T", "C5050A", "T5062C", "T5084G", "G5086A", "G5087A", "G5131A", "A5186C", "C5215T", "A5352G", "A5355G", "G5363A", "G5372T", "C5397A", "A5471T", "C5478T", "T5490C", "T5491A", "A5495C", "G5496A", "C5551T", "G5557A", "A5563C", "C5579T", "A5594G", "G5599T", "C5602T", "A5613T", "A5621T", "G5711A", "A5718G", "G5729A", "A5734T", "T5736G", "A5748G", "A5751G", "C5769A", "A5781G", "C5797T", "-5799G", "T5801C", "G5802A", "G5803A", "A5806C", "G5808T", "-5817A", "-5824A", "C5827T", "T5860C", "C5884T", "A5896T", "G5963A", "T6024A", "C6026T", "A6030T", "A6031C", "A6037G", "T6064C", "C6067G", "A6076G", "G6086A", "A6087C", "G6088A", "T6101C", "G6110C", "A6132G", "G6133T", "T6148C", "T6154C", "C6160T", "T6169C", "-6174C", "-6175C", "T6178C", "T6181C", "T6187C", "T6193C", "-6225A", "T6246A", "C6247T", "A6253G", "A6263T", "A6273G", "A6276G", "G6277A", "G6290T", "G6311A", "T6325G", "A6326G", "A6327G", "T6328A", "G6346A", "C6347T", "A6354G", "T6395A", "T6427C", "A6430G", "A6464G", "A6490G", "T6523C", "G6532A", "T6562C", "G6577A", "T6582A", "A6583G", "T6598C", "A6602T", "G6605A", "C6613T", "A6636C", "G6638A", "A6640G", "T6641C", "A6648G", "C6667T", "A6742G", "T6766C", "T6769C", "G6773A", "C6810A", "C6824T", "-6835T", "A6840C", "A6854G", "A6855C", "C6857A", "C6858A", "A6859T", "T6860C", "C6861A", "C6874T", "C6875T", "T6949C", "-6952T", "A7015T", "A7033G", "A7037T", "C7045T", "G7088C", "T7099A", "A7101G", "A7102G", "T7114C", "G7132A", "G7160A", "C7266G", "A7290C", "G7309T", "A7373C", "A7426G", "G7428A", "T7433C", "G7453T", "C7469A", "A7477G", "G7517A", "G7519A", "C7561A", "C7597T", "T7609C", "T7625C", "T7627G", "G7628A", "A7629G", "T7636A", "A7655C", "G7658C", "G7668A", "A7688G", "A7690C", "C7691A", "A7701G", "A7741G", "A7763C", "G7790A", "C7792T", "T7801A", "C7843T", "T7888G", "C7935A", "A7936C", "A7937C", "C7951A", "C8171T", "G8173A", "A8184G", "G8194A", "A8208C", "A8221T", "C8242G", "A8263G", "T8268G", "G8276A", "C8277T", "T8281G", "C8286G", "A8311C", "T8323C", "T8337A", "A8342C", "A8348T", "T8375G", "T8384A", "G8387T", "C8406A", "G8424A", "A8425C", "A8469G", "C8480T", "C8485T", "C8491-", "A8493-", "T8495-", "C8500A", "T8501G", "T8507C", "G8516A", "G8537A", "T8567A", "C8603T", "A8604G", "T8675C", "C8690T", "A8754T", "C8755G", "C8756T", "A8792C", "G8795A", "A8804G", "G8822A", "A8829T", "T8843A", "T8847A", "G8864T", "G8882A", "G8915A", "C8966A", "A8970G", "G8971-", "G8981A", "C9073T", "C9078T", "C9181T"], "INT": ["D6E", "I31V"], "RT-p51": ["A200E", "I202V", "E207K", "K211R", "S322E", "D335E", "F346Y", "R358G", "I375V", "T386I", "Q394R", "T400V", "E413D", "Q428R", "K431T", "V435L", "F440Y"], "RT-p66": ["A200E", "I202V", "E207K", "K211R", "S322E", "D335E", "F346Y", "R358G", "I375V", "T386I", "Q394R", "T400V", "E413D", "Q428R", "K431T", "V435L", "F440Y", "R463K", "V466I", "K512R"], "gp120": ["E59G", "E78T", "E86Q", "K93S", "-105N", "-107T", "F131Y", "I133M", "I137L", "K140R", "K141R", "A146S", "D157E", "N158G", "N167S", "S181T", "N204E", "I243K", "I249F", "T250S", "D251N", "N261T", "S263P", "K265R", "H280R", "H324Y", "N334A", "P335N", "S336H", "-370D", "-373S", "-376G", "I395F", "T416R", "K418E", "T471S", "K474R", "E479T"], "gp41": ["I24L", "S42N", "Q56K", "V72I", "Y108Q", "D109S", "I118L", "E119Q", "R122K", "N133R", "K154Q", "D163N", "N166K", "N195K", "P211H", "N212H", "N239S", "N251S", "Q294R", "V322G", "A325I", "A328G", "L345Q"], "nef": ["E28T", "I43V", "T48M", "A49-", "A50-", "P53E", "A56T", "S88G", "I133V", "T138C", "C169S", "E174D"], "p1": ["N9S"], "p17": ["L31M", "A54T", "G62R", "A67S", "K69Q", "I107A", "K120R", "T122E", "S126N"], "p24": ["A116T"], "p6": ["K31-", "D32-", "S40A"], "p7": ["Q9P", "R10K"], "pro": ["G17E", "E34K", "K41R", "Q61N", "I62M", "L63S", "C67E", "V77I"], "rev": ["K30P", "A108V", "V109I", "E116N"], "tat": ["N7K", "Y32F", "L39I", "K40T", "T57R", "P59S", "G61S", "K63Q", "P68L", "I69V", "Q76T", "P81Q"], "vif": ["K36G", "E78K", "T155N", "R167K", "G182D"], "vpr": ["N28H", "I83V", "I84V"], "vpu": ["Q2N", "E5Q", "D40E", "R41K", "I43L", "-73N", "-74F"]}, "labels": {"aa": "INT: D6E, I31V; RT-p51: A200E, I202V, E207K, K211R, S322E, D335E, F346Y, R358G, I375V, T386I, Q394R, T400V, E413D, Q428R, K431T, V435L, F440Y; RT-p66: A200E, I202V, E207K, K211R, S322E, D335E, F346Y, R358G, I375V, T386I, Q394R, T400V, E413D, Q428R, K431T, V435L, F440Y, R463K, V466I, K512R; gp120: E59G, E78T, E86Q, K93S, -105N, -107T, F131Y, I133M, I137L, K140R, K141R, A146S, D157E, N158G, N167S, S181T, N204E, I243K, I249F, T250S, D251N, N261T, S263P, K265R, H280R, H324Y, N334A, P335N, S336H, -370D, -373S, -376G, I395F, T416R, K418E, T471S, K474R, E479T; gp41: I24L, S42N, Q56K, V72I, Y108Q, D109S, I118L, E119Q, R122K, N133R, K154Q, D163N, N166K, N195K, P211H, N212H, N239S, N251S, Q294R, V322G, A325I, A328G, L345Q; nef: E28T, I43V, T48M, A49-, A50-, P53E, A56T, S88G, I133V, T138C, C169S, E174D; p1: N9S; p17: L31M, A54T, G62R, A67S, K69Q, I107A, K120R, T122E, S126N; p24: A116T; p6: K31-, D32-, S40A; p7: Q9P, R10K; pro: G17E, E34K, K41R, Q61N, I62M, L63S, C67E, V77I; rev: K30P, A108V, V109I, E116N; tat: N7K, Y32F, L39I, K40T, T57R, P59S, G61S, K63Q, P68L, I69V, Q76T, P81Q; vif: K36G, E78K, T155N, R167K, G182D; vpr: N28H, I83V, I84V; vpu: Q2N, E5Q, D40E, R41K, I43L, -73N, -74F", "clade": "CRF13_cpx"}}, "children": [{"name": "CRF13_cpx_NODE_0000001", "node_attrs": {"div": 0.09145, "clade_membership": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A759C", "A978C", "A5544C", "T5708G", "A7154-", "T7462A", "A7996C", "A8011C"], "RT-p51": ["D123N"], "RT-p66": ["D123N"], "gp120": ["N312K", "N434-"], "gp41": ["R231N"], "p24": ["I15L"], "rev": ["G7S", "E10A"], "tat": ["R53K"], "vif": ["R95S"], "vpr": ["N48D"]}, "labels": {"aa": "RT-p51: D123N; RT-p66: D123N; gp120: N312K, N434-; gp41: R231N; p24: I15L; rev: G7S, E10A; tat: R53K; vif: R95S; vpr: N48D"}}, "children": [{"name": "DQ845387", "node_attrs": {"div": 0.12571, "accession": "DQ845387", "clade_membership": {"value": "CRF13_cpx"}, "country": {"value": "CM"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04CM_632_28"}, "LANL_subtype": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C151T", "T155A", "A205-", "T214G", "-217A", "A304T", "A356G", "C362T", "C379G", "A380C", "A388G", "A491G", "C516A", "G519A", "A571T", "A585G", "C586T", "C603A", "G615A", "G667A", "A676G", "A701G", "C710A", "T760C", "G761A", "A774C", "T788C", "G829A", "G908A", "G977A", "A980G", "T1037C", "A1089G", "C1137A", "C1187T", "A1208G", "G1232A", "C1292T", "G1298A", "A1329C", "C1330A", "G1339A", "C1350A", "A1367G", "C1403T", "T1409C", "T1446A", "G1449A", "T1501A", "T1511C", "C1514T", "G1526A", "A1567G", "A1616G", "G1619A", "G1640A", "A1644G", "T1676C", "A1691G", "A1719G", "G1720T", "C1768A", "T1790C", "C1864T", "G1912A", "C1913T", "T2062C", "A2170C", "A2215C", "C2485T", "G2518A", "A2579G", "G2580C", "A2590G", "A2612G", "T2672C", "G2710A", "A2788G", "G2837A", "T2863C", "A2881G", "C2942A", "C2985A", "A2998G", "A3027G", "A3028G", "A3064G", "A3088G", "A3091G", "A3097G", "A3100C", "C3175T", "A3200G", "C3222T", "G3229A", "T3253G", "G3264A", "A3279G", "A3283C", "G3316A", "G3325C", "A3391G", "T3412A", "A3491G", "A3522G", "A3643C", "T3757G", "A3760G", "A3952G", "C3995T", "C4042A", "C4072T", "C4129A", "A4175G", "A4176G", "T4198C", "T4247C", "G4252A", "A4255G", "C4270T", "C4286T", "C4288T", "A4338G", "A4397T", "A4543T", "C4569T", "T4679G", "C4724T", "A4725C", "A4774G", "G4784A", "A4790T", "G4859A", "A4861G", "A4871T", "C4914T", "C4976A", "A5085C", "C5091T", "A5134G", "T5224G", "A5246G", "C5248T", "A5268C", "C5306T", "T5313C", "A5336C", "T5354G", "G5355-", "T5356-", "G5357-", "C5358-", "G5359-", "A5360-", "A5397C", "G5403A", "T5424C", "T5430A", "T5436A", "G5437C", "T5439G", "T5471A", "G5482T", "T5483G", "C5495A", "A5496C", "G5534A", "C5559T", "G5565A", "T5579C", "T5602A", "-5603A", "C5615A", "G5620A", "A5623G", "C5627T", "A5652C", "C5679T", "G5706A", "T5739G", "G5748T", "G5775A", "G5793T", "G5864A", "-5866C", "A6044C", "T6046G", "G6121A", "G6149A", "T6155C", "A6167G", "-6170C", "-6172C", "-6180C", "A6185C", "C6187T", "-6189A", "-6194G", "-6195G", "-6196A", "-6198A", "-6200A", "-6201C", "-6202A", "-6203C", "-6204C", "-6205A", "-6206C", "-6207C", "-6208T", "-6209A", "-6210T", "-6211G", "-6212A", "-6213C", "-6214A", "-6215A", "-6216C", "-6217T", "-6218G", "-6219G", "A6230T", "A6279G", "A6282G", "C6293A", "G6303A", "-6333A", "A6336G", "G6354A", "C6396G", "T6409A", "G6442A", "T6454C", "C6499T", "A6535G", "C6562T", "G6575A", "A6578G", "A6581C", "A6599T", "G6631A", "C6632T", "T6637A", "A6638G", "C6641G", "A6647G", "T6733A", "T6745G", "C6752A", "A6765C", "G6771A", "A6777C", "A6786C", "C6790A", "A6791G", "C6797G", "A6798G", "C6812A", "A6818G", "A6821C", "-6830A", "-6831C", "-6832A", "A6836G", "T6838G", 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"A8276T", "A8288C", "C8296T", "A8337T", "G8388A", "A8424T", "T8483C", "A8486-", "G8487-", "C8488-", "A8489-", "-8493A", "-8495A", "G8501T", "G8502A", "T8505A", "G8506A", "C8507T", "G8508A", "C8510A", "A8531T", "T8603A", "C8676T", "A8701T", "T8786A", "A8870G", "C8913A", "-8971A", "T8972C", "A8984G", "C8985G", "C8992A", "T9040G", "T9051A"], "INT": ["N134G", "H171Y", "K188R", "I208L", "E256D", "A265V"], "RT-p51": ["E40D", "S162A", "T173A", "D248N", "L283I", "A297E", "K311R", "E335D", "T369A", "A376V", "I386M", "R390K", "K395R", "E396D", "W410C"], "RT-p66": ["E40D", "S162A", "T173A", "D248N", "L283I", "A297E", "K311R", "E335D", "T369A", "A376V", "I386M", "R390K", "K395R", "E396D", "W410C", "I466V", "K476R", "E516D", "S554K"], "gp120": ["D4N", "G59V", "N64Q", "N71K", "V99I", "N105D", "-106L", "-109T", "-111H", "I126L", "K142R", "K143R", "L147I", "N161S", "S167N", "T181S", "E241K", "I242V", "K243Q", "L260F", "P263A", "R265G", "D294E", "D297E", "Q300K", "N304T", "S306N", "N311T", "T313A", "Q315G", "K319E", "R322G", "K323Q", "-326T", "N328E", "K329T", "I331T", "I343V", "-368T", "-372N", "-374T", "-375Q", "-379D", "-381T", "-382P", "T387I", "F395I", "V396I", "M406I", "Q412E", "T439I"], "gp41": ["L4I", "Q32N", "H53Q", "I72V", "D129E", "N163S", "V187I", "K195N", "R196K", "H211P", "D232N", "L242F", "L254I", "I264V", "A268T", "T306R", "A310V", "I325F", "I329L", "Q345L"], "nef": ["V16I", "T28S", "M48I", "E53D", "D54T", "C55N", "E63D", "Y120F"], "p1": ["I5V"], "p17": ["A15S", "K18R", "L61M", "Y79F", "T84V", "Q90K", "V94I", "S111N", "K114R", "S125R"], "p2": ["S8T", "G9T", "A10S"], "p24": ["M10P", "S33N", "I91L", "S120G", "L136M", "T200H", "R203K", "P207T"], "p6": ["S14V", "P30Q"], "p7": ["I12N", "K34R"], "pro": ["P39S"], "rev": ["A15V", "R17K", "R50Q", "I55L", "S61C", "A68E", "P72H", "H82R", "S86N", "P100S", "S107P", "I109V", "N116K"], "tat": ["K7N", "A21P", "F32Y", "V36C", "T40N", "L68P", "T76P"], "vif": ["N47H", "K63R", "K92R", "H110Y", "S130R", "K167Q", "H183R"], "vpr": ["H40Q", "E55A", "I70T", "Q77H", "V84-", "R85-"], "vpu": ["A3D", "Q5I", "I6V", "A7V", "D44E", "R47S", "E62D"]}, "labels": {"aa": "INT: N134G, H171Y, K188R, I208L, E256D, A265V; RT-p51: E40D, S162A, T173A, D248N, L283I, A297E, K311R, E335D, T369A, A376V, I386M, R390K, K395R, E396D, W410C; RT-p66: E40D, S162A, T173A, D248N, L283I, A297E, K311R, E335D, T369A, A376V, I386M, R390K, K395R, E396D, W410C, I466V, K476R, E516D, S554K; gp120: D4N, G59V, N64Q, N71K, V99I, N105D, -106L, -109T, -111H, I126L, K142R, K143R, L147I, N161S, S167N, T181S, E241K, I242V, K243Q, L260F, P263A, R265G, D294E, D297E, Q300K, N304T, S306N, N311T, T313A, Q315G, K319E, R322G, K323Q, -326T, N328E, K329T, I331T, I343V, -368T, -372N, -374T, -375Q, -379D, -381T, -382P, T387I, F395I, V396I, M406I, Q412E, T439I; gp41: L4I, Q32N, H53Q, I72V, D129E, N163S, V187I, K195N, R196K, H211P, D232N, L242F, L254I, I264V, A268T, T306R, A310V, I325F, I329L, Q345L; nef: V16I, T28S, M48I, E53D, D54T, C55N, E63D, Y120F; p1: I5V; p17: A15S, K18R, L61M, Y79F, T84V, Q90K, V94I, S111N, K114R, S125R; p2: S8T, G9T, A10S; p24: M10P, S33N, I91L, S120G, L136M, T200H, R203K, P207T; p6: S14V, P30Q; p7: I12N, K34R; pro: P39S; rev: A15V, R17K, R50Q, I55L, S61C, A68E, P72H, H82R, S86N, P100S, S107P, I109V, N116K; tat: K7N, A21P, F32Y, V36C, T40N, L68P, T76P; vif: N47H, K63R, K92R, H110Y, S130R, K167Q, H183R; vpr: H40Q, E55A, I70T, Q77H, V84-, R85-; vpu: A3D, Q5I, I6V, A7V, D44E, R47S, E62D"}}}, {"name": "MF109417", "node_attrs": {"div": 0.14919, "accession": "MF109417", "clade_membership": {"value": "CRF13_cpx"}, "country": {"value": "GB"}, "date": {"value": 2014.0}, "Strain_name": {"value": "13612_1_33.3"}, "LANL_subtype": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G361C", "A378G", "A389G", "A426C", "G428A", "A431G", "A509G", "C516T", "A521G", "G527A", "T560C", "A561C", "T602C", "A604G", "A619G", "A640C", "G650A", "A658G", "A664G", "G694A", "A697C", "A711-", "A712-", "C713-", "T760A", "G761T", "C767T", 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"T307I", "I309V", "E313G", "R324G", "F340L", "R342L"], "nef": ["G3S", "W5C", "S8G", "S9C", "I10M", "V11A", "R22Q", "T23-", "P24-", "P25-"], "p1": ["K4R"], "p17": ["S9T", "M31L", "R62G", "K76Q", "Q90R", "K95R", "E102A", "Q108R", "N110S", "R120K", "D121A", "N126-"], "p2": ["G9N", "A10T", "A12V", "I13M"], "p24": ["M10H", "A14P", "S44A", "T116I", "R154K", "N183G"], "p6": ["Q2E", "P23T", "-26N", "K27Q", "Q28E", "E29S"], "p7": ["K3R", "S4G", "I12T", "K20R", "R26K", "D48E"], "pro": ["L10I", "V11-", "K14R", "I20L", "N37D", "R57K"], "rev": ["A15T", "P30S", "P31S", "K39R", "R50H", "H53R", "S54T", "I55L", "A68E", "L83I", "G90E", "Q95E", "V97L", "S106P"], "tat": ["K29R", "I39M", "S61D", "Q63K", "N64D", "T76I", "T77I"], "vif": ["R17K", "R37K", "R41K", "N47R", "H48N", "K50R", "I51V", "L64V", "K78E", "K92E", "R93K", "V98I", "G101S", "N155-"], "vpr": ["Q3R", "H28Q", "G41S", "H45Y", "E58Q", "I70T", "V83I"], "vpu": ["A3L", "L4V", "Q5-", "A15V", "I18L", "L33I", "E40D", "K41Q", "L42I", "T61K", "E70D", "N73D"]}, "labels": {"aa": "INT: E6D, S17N, I101L, I113V, G163T, K173R, I208L; RT-p51: T69S, I135V, Q145C, P243A, E324D, T377L, S379A, R428Q, L435P; RT-p66: T69S, I135V, Q145C, P243A, E324D, T377L, S379A, R428Q, L435P, Q480H, R512K, L517I, K530R; gp120: D4N, N5-, D34E, T35R, T78E, I80V, -106S, T107K, -109E, T110-, N112-, N113-, N132E, M133V, T134P, T135S, E136D, L137V, R138K, R140K, K143T, L147F, K150G, E157-, G158-, N159-, N160-, N161-, S162-, P210L, E240G, E241K, K243M, S246T, F249K, S250T, E262T, R265N, P271F, I279V, R280H, I281L, A291T, D294G, R307G, T308E, Q315K, K316E, A318V, K319T, K320Q, K323T, L325F, N327-, I331N, F333N, A334F, N335S, H336P, S337I, L341P, T345Q, N358D, E361K, S365-, T366-, W367-, N369-, D370-, T371-, S373-, G376-, S377-, N378-, T380-, P389T, V396I, Q404R, V414L, R416Q, E418N, N420S, N432-, N435-, N437-, K462Q, K472R; gp41: V2I, N42S, A50V, H53A, L54M, S101N, N105-, S109D, D113G, K122R, D129N, R133D, E137I, S138A, A156T, S165T, K166Q, Q199E, R221G, D230G, D232T, I235V, S239N, L265S, E272K, R276Q, L277R, N298T, S302T, L304F, T306A, T307I, I309V, E313G, R324G, F340L, R342L; nef: G3S, W5C, S8G, S9C, I10M, V11A, R22Q, T23-, P24-, P25-; p1: K4R; p17: S9T, M31L, R62G, K76Q, Q90R, K95R, E102A, Q108R, N110S, R120K, D121A, N126-; p2: G9N, A10T, A12V, I13M; p24: M10H, A14P, S44A, T116I, R154K, N183G; p6: Q2E, P23T, -26N, K27Q, Q28E, E29S; p7: K3R, S4G, I12T, K20R, R26K, D48E; pro: L10I, V11-, K14R, I20L, N37D, R57K; rev: A15T, P30S, P31S, K39R, R50H, H53R, S54T, I55L, A68E, L83I, G90E, Q95E, V97L, S106P; tat: K29R, I39M, S61D, Q63K, N64D, T76I, T77I; vif: R17K, R37K, R41K, N47R, H48N, K50R, I51V, L64V, K78E, K92E, R93K, V98I, G101S, N155-; vpr: Q3R, H28Q, G41S, H45Y, E58Q, I70T, V83I; vpu: A3L, L4V, Q5-, A15V, I18L, L33I, E40D, K41Q, L42I, T61K, E70D, N73D"}}}]}, {"name": "CRF13_cpx_NODE_0000002", "node_attrs": {"div": 0.09812, "clade_membership": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A161C", "C379A", "A554G", "G1016A", "A1142G", "G1661A", "C1782T", "C2211A", "G2248A", "A2462G", "T2536C", "T3139C", "A3307C", "A4498G", "G4644A", "C4674T", "A5069G", "G5620C", "T5621C", "T5687A", "A5707G", "-5866C", "T5917G", "C6097T", "C6165A", "-6172C", "C6183-", "-6194A", "T6199C", "-6202C", "-6212A", "-6213T", "-6215A", "-6217G", "-6219A", "A6222G", "A6261G", "-6333G", "C6370T", "A6635G", "T6637C", "T6694G", "A6800C", "A6936C", "A6937C", "-6956G", "-6957A", "-6958A", "-6961T", "-6962G", "-6963A", "-6964C", "-6965A", "-6966C", "-6980G", "-6981G", "-6982G", "-6983T", "-6984C", "-6989G", "-7003T", "-7004G", "-7007A", "-7009T", "T7012A", "-7162G", "-7164C", "-7165T", "G7291A", "G7773A", "C7774T", "A7938C", "A8196T", "G8255A", "G8264A", "G8335A", "A8486G", "T8492-", "C8494-", "C8503G", "C8775T", "G8974-", "T8976-", "C8978-", "A8979-", "T9028C"], "RT-p51": ["T39K", "E404D"], "RT-p66": ["T39K", "E404D", "S554N"], "gp120": ["D21E", "T104N", "-106I", "-124E", "E136G", "K142Q", "V154E", "N160S", "T261A", "E262K", "T308K", "K316Q", "E361A", "-368E", "-384D", "-385N", "T479A"], "gp41": ["S157N", "H212P", "N298I", "V318I", "V321I"], "p17": ["A15K"], "tat": ["T77P"], "vif": ["A20T", "H30Y"], "vpu": ["F27Y", "R34V"]}, "labels": {"aa": "RT-p51: T39K, E404D; RT-p66: T39K, E404D, S554N; gp120: D21E, T104N, -106I, -124E, E136G, K142Q, V154E, N160S, T261A, E262K, T308K, K316Q, E361A, -368E, -384D, -385N, T479A; gp41: S157N, H212P, N298I, V318I, V321I; p17: A15K; tat: T77P; vif: A20T, H30Y; vpu: F27Y, R34V"}}, "children": [{"name": "CRF13_cpx_NODE_0000003", "node_attrs": {"div": 0.10368, "clade_membership": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A697C", "G941A", "A1278G", "A1279G", "T1501G", "A1659-", "A1660-", "A1661-", "A1839G", "G1999A", "A2221G", "A2460C", "G2683A", "A2919G", "T3207C", "T3334G", "T3399C", "A3768G", "T4177C", "G4692A", "A4695G", "A4735G", "A4818C", "G5415A", "A5447C", "A6158C", "-6180A", "A6186C", "-6216T", "G6303A", "T6315A", "A6371G", "C6769A", "A6822C", "G6829T", "T6875G", "G6881A", "-6979A", "-6994A", "-6995G", "-6996G", "-6997G", "-7005A", "-7006C", "-7008C", "A7108C", "A7160G", "G7269A", "A7583G", "A8032G", "A8207T", "C8213T", "C8223T", "A8228G", "G8487A", "G8502A", "G8508A", "A8531C", "G8739A", "A8794G", "T8947A", "C8975-", "A8980-"], "RT-p51": ["E122A", "K275R", "V371A", "D413E", "L435P"], "RT-p66": ["E122A", "K275R", "V371A", "D413E", "L435P", "K558R"], "gp120": ["G59A", "N102H", "I173V", "K323T", "L341V", "-379D", "-381G", "N385T", "E418D"], "gp41": ["T94A", "T307I", "I309V"], "nef": ["D54S", "E63D", "K151R", "L198M", "F202Y"], "p1": ["K10-"], "p17": ["R62C", "D121A"], "p24": ["N183G"], "p7": ["I12S"], "pro": ["K14R"], "tat": ["K24T", "H60R"], "vif": ["T20K", "G36R", "R37G", "K50R", "K78Q"]}, "labels": {"aa": "RT-p51: E122A, K275R, V371A, D413E, L435P; RT-p66: E122A, K275R, V371A, D413E, L435P, K558R; gp120: G59A, N102H, I173V, K323T, L341V, -379D, -381G, N385T, E418D; gp41: T94A, T307I, I309V; nef: D54S, E63D, K151R, L198M, F202Y; p1: K10-; p17: R62C, D121A; p24: N183G; p7: I12S; pro: K14R; tat: K24T, H60R; vif: T20K, G36R, R37G, K50R, K78Q"}}, "children": [{"name": "CRF13_cpx_NODE_0000004", "node_attrs": {"div": 0.10925, "clade_membership": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T227-", "C1005G", "T1148C", "C1229T", "A1476G", "A1588G", "C1831T", "G1840A", "G1986A", "G2662A", "G2727A", "A3280G", "A3520G", "C3545T", "T4198C", "A4391T", "G4498A", "G4677A", "A4819C", "A5059G", "G5167A", "T5351C", "G5352A", "G5730A", "G5736A", "G5856A", "T6030C", "C6139T", "-6170A", "C6187T", "-6196C", "-6200A", "-6203A", "-6204A", "-6205C", "-6206A", "-6208C", "-6211C", "A6232G", "A6461G", "C6692A", "G6962A", "C6966A", "-6967T", "-6968A", "-6969C", "-6970C", "-6971A", "-6972G", "-6973C", "-6974A", "-6975C", "-6976G", "-6998T", "-6999C", "-7000A", "-7001A", "-7002A", "G7072A", "T7147G", "A7148G", "A7158C", "A7161C", "G7162A", "C7164A", "G7197A", "T7555C", "A8011C", "C8095A", "C8323A", "A8447G", "G8590C", "T8740C", "G8861A"], "INT": ["T206S"], "RT-p51": ["R211K"], "RT-p66": ["R211K"], "gp120": ["S1N", "I126M", "K203E", "F249I", "K319E", "L325F", "D370N", "T371N", "-372T", "-374T", "-382S", "-383N", "M406I", "R448K"], "gp41": ["D230G", "F340L"], "nef": ["G83A", "V133T", "M173I"], "p24": ["P92A", "E98D"], "p6": ["S24P", "S51L"], "p7": ["S4G", "K41R"], "pro": ["S63N"], "rev": ["I55L", "L83I"], "vif": ["V31I", "Q78P", "K158R"], "vpr": ["V83I"], "vpu": ["D44E"]}, "labels": {"aa": "INT: T206S; RT-p51: R211K; RT-p66: R211K; gp120: S1N, I126M, K203E, F249I, K319E, L325F, D370N, T371N, -372T, -374T, -382S, -383N, M406I, R448K; gp41: D230G, F340L; nef: G83A, V133T, M173I; p24: P92A, E98D; p6: S24P, S51L; p7: S4G, K41R; pro: S63N; rev: I55L, L83I; vif: V31I, Q78P, K158R; vpr: V83I; vpu: D44E"}}, "children": [{"name": "KP718924", "node_attrs": {"div": 0.14919, "accession": "KP718924", "clade_membership": {"value": "CRF13_cpx"}, "country": {"value": "CM"}, "date": {"value": 2008.0}, "Strain_name": {"value": "228_10"}, "LANL_subtype": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-227A", "A304T", "A374G", "A399C", "A426T", "A500G", "C516T", "G519T", "A521C", "C537A", "C540A", "T549A", "G615A", "G645A", "G647A", "A693G", "G694C", "G695A", "A700G", "C767T", "G770A", "C773T", "A881G", "T979C", "C987T", "C988T", "A991C", "T1004G", "A1025T", "T1037C", "T1058C", "A1077G", "C1078T", "G1090A", "A1097G", "G1142A", "A1176G", "T1214C", "T1262C", "G1278A", "G1279A", "A1418G", "T1422C", "G1449A", "G1487A", "T1502C", "C1536A", "C1556T", "A1601C", "C1610T", "G1619A", "G1664A", "C1706T", "G1725A", "G1727C", "G1732A", "T1741A", "G1743A", "G1769-", "-1775C", "T1790C", "A1794G", "A1828C", "G1852A", "A1894G", "A1907G", "T1909A", "G1968A", "C1981T", "T2024C", "A2098G", "T2245A", "C2296T", "T2347A", "A2389G", "G2422A", "G2509A", "A2545G", "A2605G", "C2613A", "C2653T", "G2716A", "A2734G", "C2806T", "C2839A", "G2843A", "A3031G", "G3035A", "T3036C", "A3071G", "A3073G", 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"C5866A", "T5911A", "G5917C", "G5954T", "A5955C", "T5980C", "A6008G", "A6019C", "A6023C", "G6055A", "C6064T", "G6067C", "G6076A", "G6079A", "T6100C", "C6110G", "T6142A", "C6148T", "C6158A", "A6165C", "A6167G", "T6171G", "C6172T", "A6177G", "-6183G", "-6189G", "A6191C", "-6195A", "-6198C", "-6201G", "-6207G", "-6209G", "-6210A", "T6213G", "-6214A", "A6215C", "G6217A", "-6218A", "G6222A", "A6225T", "A6234C", "T6242A", "T6263G", "G6276A", "A6283G", "C6305A", "T6306C", "T6322G", "G6333A", "C6364A", "G6368A", "G6371A", "T6372C", "G6458A", "T6460C", "C6469T", "C6477G", "C6482T", "G6490T", "G6526A", "C6545T", "G6569A", "G6575C", "A6605G", "A6609G", "G6611A", "C6636T", "G6640A", "G6648A", "C6660G", "T6763C", "A6773G", "A6777C", "T6787C", "A6788T", "A6789C", "T6793A", "A6799G", "C6826T", "C6840A", "A6847C", "G6854A", "C6855A", "T6856A", "C6860A", "A6861G", "C6936G", "C6949T", "A6959T", "A6960C", "-6977T", "-6978C", "A6979G", "T7045G", "A7089C", "A7100C", "G7101A", "G7106A", "C7108T", "A7133G", "A7151G", "T7159A", "G7160A", "G7181A", "G7182T", "C7250T", "G7288A", "G7307A", "T7309C", "A7318G", "A7375G", "A7398T", "G7459A", "C7625T", "G7627T", "A7628G", "G7629A", "T7642G", "G7677A", "A7685T", "G7741A", "A7773G", "T7792A", "T7796A", "A7880G", "A7964G", "G8019A", "G8032A", "G8133A", "G8158A", "G8180A", "T8214A", "A8222G", "G8263A", "A8272G", "A8275C", "C8293A", "C8311T", "G8385A", "C8386A", "T8387G", "A8397G", "G8398A", "T8414C", "A8429G", "A8458G", "A8461G", "A8500C", "G8501A", "C8507T", "A8525G", "G8561A", "C8675T", "C8684T", "C8699T", "T8756C", "A8762G", "G8814A", "A8815C", "A8874G", "G8902C", "T8903C", "C8934A", "C8948T", "A8950T"], "INT": ["S17N", "V31I", "V112M", "D207E", "R269K"], "RT-p51": ["T173K", "D248E", "D250N", "V314T", "I326V", "E335D", "A360S", "V365I", "K366R", "A371T", "T377M", "R428Q", "P435A"], "RT-p66": ["T173K", "D248E", "D250N", "V314T", "I326V", "E335D", "A360S", "V365I", "K366R", "A371T", "T377M", "R428Q", "P435A", "K476R", "E492K", "R512K", "R558K"], "gp120": ["S3L", "D4E", "D19E", "E21D", "D34S", "N52D", "E55D", "N57H", "M67I", "Q86E", "H102N", "N104T", "N105D", "I106L", "T107K", "N108-", "T110-", "N112-", "N113-", "-123K", "E124V", "K127T", "S130T", "L137V", "R141K", "L151T", "I156M", "S160N", "V172I", "V173T", "D202N", "T208R", "P210S", "K212N", "E239K", "E241Q", "N251D", "N252S", "A253T", "A261V", "R265K", "T269S", "R307G", "K308T", "N312S", "K320Q", "A334K", "H336S", "A361G", "N369S", "-375S", "N397K", "Q412P", "R416Q", "D418N", "T427A", "N432D", "-433D", "N435T", "-436T", "G443I"], "gp41": ["V2I", "L4G", "Q32L", "Q108Y", "S109D", "D113E", "S125N", "T128S", "N157S", "N163K", "S165T", "I193V", "R221G", "S239N", "R276H", "L277N", "G293S", "L304Y", "I307V", "R324S"], "nef": ["A15K", "R19E", "K39R", "H40R", "E53A", "E158T", "R178G", "S187T", "Y203F"], "p17": ["M31L", "L68I", "Q69K", "S72T", "V94I", "V104I", "R120A", "A121R", "E122A", "N124G"], "p2": ["G9S"], "p24": ["L83T", "P86L", "Q87P", "I91L", "T116V", "S120N", "S149G", "G183N"], "p6": ["E6G", "A12E", "G16-", "F17S", "G18F", "I21E", "A22K", "P23T", "P25S", "-26P", "T39A", "*50S"], "p7": ["L24I", "Q45H"], "pro": ["N37E", "R57K"], "rev": ["G7S", "L13T", "T14-", "A15T", "V16A", "K39R", "V104M", "G111E"], "tat": ["Q17R", "K19R", "R53K", "S59N", "R60-", "S61N"], "vif": ["Y30H", "R36K", "F39V", "R41K", "D61E", "T74P", "L102M", "F115L", "S118T", "I154V", "P156T", "K167Q", "V170A", "H183L", "H192Q"], "vpr": ["L20I", "H45Y", "E58G", "I70V", "V84I"], "vpu": ["A3G", "Q5T", "A11G", "F16L", "A19V", "Y27L", "K41R", "R47S", "A50E", "E70D", "L82V"]}, "labels": {"aa": "INT: S17N, V31I, V112M, D207E, R269K; RT-p51: T173K, D248E, D250N, V314T, I326V, E335D, A360S, V365I, K366R, A371T, T377M, R428Q, P435A; RT-p66: T173K, D248E, D250N, V314T, I326V, E335D, A360S, V365I, K366R, A371T, T377M, R428Q, P435A, K476R, E492K, R512K, R558K; gp120: S3L, D4E, D19E, E21D, D34S, N52D, E55D, N57H, M67I, Q86E, H102N, N104T, N105D, I106L, T107K, N108-, T110-, N112-, N113-, -123K, E124V, K127T, S130T, L137V, R141K, L151T, I156M, S160N, V172I, V173T, D202N, T208R, P210S, K212N, E239K, E241Q, N251D, N252S, A253T, A261V, R265K, T269S, R307G, K308T, N312S, K320Q, A334K, H336S, A361G, N369S, -375S, N397K, Q412P, R416Q, D418N, T427A, N432D, -433D, N435T, -436T, G443I; gp41: V2I, L4G, Q32L, Q108Y, S109D, D113E, S125N, T128S, N157S, N163K, S165T, I193V, R221G, S239N, R276H, L277N, G293S, L304Y, I307V, R324S; nef: A15K, R19E, K39R, H40R, E53A, E158T, R178G, S187T, Y203F; p17: M31L, L68I, Q69K, S72T, V94I, V104I, R120A, A121R, E122A, N124G; p2: G9S; p24: L83T, P86L, Q87P, I91L, T116V, S120N, S149G, G183N; p6: E6G, A12E, G16-, F17S, G18F, I21E, A22K, P23T, P25S, -26P, T39A, *50S; p7: L24I, Q45H; pro: N37E, R57K; rev: G7S, L13T, T14-, A15T, V16A, K39R, V104M, G111E; tat: Q17R, K19R, R53K, S59N, R60-, S61N; vif: Y30H, R36K, F39V, R41K, D61E, T74P, L102M, F115L, S118T, I154V, P156T, K167Q, V170A, H183L, H192Q; vpr: L20I, H45Y, E58G, I70V, V84I; vpu: A3G, Q5T, A11G, F16L, A19V, Y27L, K41R, R47S, A50E, E70D, L82V"}}}, {"name": "DQ845388", "node_attrs": {"div": 0.13955, "accession": "DQ845388", "clade_membership": {"value": "CRF13_cpx"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CM_A1394"}, "LANL_subtype": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A101G", "G112A", "T126C", "C151A", "T153-", "T165C", "T201A", "A203G", "C213T", "T214G", "-217A", "C218G", "A220-", "G221-", "A222-", "G223-", "A224-", "A225-", "G226-", "T228-", "C229-", "T230-", "C231-", "T232-", "C233-", "G286A", "A301G", "G329T", "G333A", "A353G", "A378C", "G398A", "G401A", "A431G", "C471A", "C482T", "A511G", "G520T", "T536A", "G607A", "G608A", "A619G", "G650A", "A664G", "A692G", "G762A", "G810A", "A836G", "T885C", "A965G", "A978C", "C1002G", "A1025C", "A1035G", "C1052T", "G1067A", "G1109A", "G1139A", "G1192A", "A1263T", "C1280T", "T1299C", "C1330T", "G1339A", "C1342G", "C1350T", "A1359T", "G1394A", "G1404A", "T1421G", "G1442A", "C1444G", "T1446G", "G1450C", "T1451A", "A1495G", "G1501A", "T1653C", "T1679C", "G1687A", "A1733G", "-1746T", "-1747C", "-1748T", "T1752C", "C1754-", "C1755-", "C1756-", "G1839A", "A1848G", "A1856C", "A1899C", "G1972A", "A1999G", "A2005G", "T2013C", "T2080C", "A2089G", "A2140G", "C2206T", "A2210C", "A2215C", "A2241G", "T2320A", "T2323C", "A2350G", "C2460T", "T2499C", "A2590G", "C2622A", "G2624A", "A2626C", "G2632A", "A2665G", "T2708C", "G2728A", "C2776T", "C2822T", "G2842A", "G2847T", "C2930T", "A3064G", "A3088G", "A3099G", "A3103G", "A3211G", "G3229A", "T3253C", "G3264A", "C3359T", "T3412A", "C3415T", "C3498G", "T3644A", "G3766A", "C3773T", "A3793T", "T3865G", "C3908T", "A3910G", "T4039C", "A4076C", "A4078C", "A4150G", "A4186G", "G4262A", "G4263C", "G4264T", "A4543C", "T4727C", "A4785G", "G4864A", "C4868T", "T4959C", "C4965G", "C4976T", "A5147C", "A5238T", "T5239C", "C5250A", "A5415C", "T5492C", "C5495A", "C5554T", "A5555C", "C5556G", "A5566G", "T5599G", "T5602G", "C5627T", "A5659T", "G5692C", "A5694G", "A5702G", "C5713G", "T5731A", "T5739G", "G5748A", "G5793T", "T5797C", "C5869A", "C5878T", "T6025A", "G6029C", "A6044G", "T6046G", "C6174A", "A6177T", "A6180C", "-6183A", "C6186A", "-6189A", "A6191T", "A6192T", "-6195C", "-6198T", "-6201A", "-6207A", "-6209T", "-6210C", "T6213C", "-6214C", "A6219-", "G6220-", "A6225G", "A6268T", "A6279T", "T6307A", "A6320C", "A6324G", "G6327A", "T6340C", "G6547A", "A6573G", "A6577G", "G6635A", "C6636A", "C6637A", "A6638G", "G6640T", "A6646G", "C6661T", "G6716A", "G6774A", "A6781T", "C6812A", "-6830A", "-6831A", "-6832T", "T6838C", "C6843A", "T6898C", "A6959G", "A6960G", "T6961G", "-6977C", "-6978A", "G7033A", "G7048A", "T7081C", "A7154G", "T7228C", "G7266C", "G7275A", "G7307-", "T7308-", "T7309-", "G7311C", "A7315G", "C7373A", "A7428G", "G7440T", "G7448C", "C7463A", "C7474T", "C7579T", "G7608C", "T7622A", "C7623A", "G7657A", "C7690T", "A7691G", "T7692A", "A7706C", "A7732G", "A7790G", "A7801C", "A7918G", "A7943G", "G7944A", "C8005A", "T8008A", "C8065T", "C8080A", "G8143A", "C8146T", "T8155C", "T8159G", "T8167C", "A8173G", "G8181T", "A8193G", "T8196A", "A8204G", "T8213C", "A8219G", "A8241G", "A8255G", "T8265C", "A8276G", "T8278A", "G8329A", "C8331T", "A8335G", "C8351T", "G8418A", "A8426T", "A8455G", "C8471T", "A8487T", "C8510T", "C8531T", "A8584T", "G8774A", "T8775C", "G8804A", "G8808A", "C8809A", "A8882C", "T8904G", "G8970-", "T8972-", "T8973-", "-8978C", "-8979A", "-8980T", "A8981G", "G9027A", "G9030A"], "INT": ["E6D", "I101L", "G163T", "E256D"], "RT-p51": ["K39Q", "E40D", "K49R", "A122V", "I135T", "P176Q", "E177N", "P243S", "S251I", "E335G", "R390K"], "RT-p66": ["K39Q", "E40D", "K49R", "A122V", "I135T", "P176Q", "E177N", "P243S", "S251I", "E335G", "R390K", "T468S", "L517I"], "gp120": ["N5K", "N57K", "A59P", "N64E", "N71K", "T107N", "-109F", "-111I", "-114N", "-115S", "-116T", "-117M", "-118R", "E124G", "R138S", "Q142L", "I156L", "E157G", "G158E", "E240G", "A261K", "K262D", "A288T", "R307K", "E309D", "-326N", "K329T", "T330K", "N369G", "-375Q", "M398I", "N434-", "N435-", "N437-", "S471T", "R474K"], "gp41": ["V2A", "G3L", "L4-", "L24I", "N42S", "R46M", "E49Q", "L54M", "S102T", "N105K", "S107N", "I130E", "I135L", "N163D", "K166N", "R214E", "W286G", "G293V", "K297R", "I298N", "I301V", "T306A", "E313G", "I318V", "I321T", "I325V", "A343V"], "nef": ["D38G", "-49S", "T51-", "Y81F", "A156N", "S188A", "M198L"], "p1": ["S8P"], "p17": ["K15Q", "L46I", "Q59R", "C62V", "R91K", "K95R", "N110S"], "p24": ["V11I", "V27I", "I91V", "S102G", "R154K", "T178S", "T200I", "R203K", "A204G", "P207S", "T210S", "G225S"], "p6": ["P23S"], "p7": ["K10R", "S12N"], "pro": ["R14K", "E17G", "I20L", "K34T", "I72T"], "rev": ["T14R", "E32G", "H53N", "S54T", "T62A", "L73F", "L78I", "G99R", "P100S", "S103P", "V104G", "S107P", "I109V", "N116K"], "tat": ["Q13H", "I39T", "T40K", "R60S", "N64D", "G79R"], "vif": ["K20T", "T67A", "R93K", "H127D", "Q187H"], "vpr": ["N15H", "H45L", "T49N"], "vpu": ["A7V", "I18L", "E29Q", "K32R", "Q36E", "L42I", "E62D"]}, "labels": {"aa": "INT: E6D, I101L, G163T, E256D; RT-p51: K39Q, E40D, K49R, A122V, I135T, P176Q, E177N, P243S, S251I, E335G, R390K; RT-p66: K39Q, E40D, K49R, A122V, I135T, P176Q, E177N, P243S, S251I, E335G, R390K, T468S, L517I; gp120: N5K, N57K, A59P, N64E, N71K, T107N, -109F, -111I, -114N, -115S, -116T, -117M, -118R, E124G, R138S, Q142L, I156L, E157G, G158E, E240G, A261K, K262D, A288T, R307K, E309D, -326N, K329T, T330K, N369G, -375Q, M398I, N434-, N435-, N437-, S471T, R474K; gp41: V2A, G3L, L4-, L24I, N42S, R46M, E49Q, L54M, S102T, N105K, S107N, I130E, I135L, N163D, K166N, R214E, W286G, G293V, K297R, I298N, I301V, T306A, E313G, I318V, I321T, I325V, A343V; nef: D38G, -49S, T51-, Y81F, A156N, S188A, M198L; p1: S8P; p17: K15Q, L46I, Q59R, C62V, R91K, K95R, N110S; p24: V11I, V27I, I91V, S102G, R154K, T178S, T200I, R203K, A204G, P207S, T210S, G225S; p6: P23S; p7: K10R, S12N; pro: R14K, E17G, I20L, K34T, I72T; rev: T14R, E32G, H53N, S54T, T62A, L73F, L78I, G99R, P100S, S103P, V104G, S107P, I109V, N116K; tat: Q13H, I39T, T40K, R60S, N64D, G79R; vif: K20T, T67A, R93K, H127D, Q187H; vpr: N15H, H45L, T49N; vpu: A7V, I18L, E29Q, K32R, Q36E, L42I, E62D"}}}]}, {"name": "CRF13_cpx_NODE_0000005", "node_attrs": {"div": 0.10629999999999999, "clade_membership": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A980G", "C1002T", "C2596T", "C4645A", "A4774G", "A5462G", "T5600A", "-5603T", "T5787C", "-6218G", "G6345A", "A6682G", "G6809A", "A6821G", "-6831A", "G6935A", "A7152G", "T7156A", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "G8017C", "G8105A", "C8202T", "A8922G", "C8934A", "T8988-"], "gp120": ["-122E", "R164K", "-433S"], "gp41": ["A268T"], "nef": ["I194V"], "p2": ["S8T"], "p24": ["L83M", "I91F", "I96L"], "rev": ["E57Q", "S86N"], "tat": ["K29R"], "vif": ["K63R"]}, "labels": {"aa": "gp120: -122E, R164K, -433S; gp41: A268T; nef: I194V; p2: S8T; p24: L83M, I91F, I96L; rev: E57Q, S86N; tat: K29R; vif: K63R"}}, "children": [{"name": "KP718926", "node_attrs": {"div": 0.14093, "accession": "KP718926", "clade_membership": {"value": "CRF13_cpx"}, "country": {"value": "CM"}, "date": {"value": 2008.0}, "Strain_name": {"value": "833_62"}, "LANL_subtype": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C213T", "G278A", "G280-", "G286A", "A304T", "A378C", "A417C", "A563G", "A576T", "C577T", "A585G", "C586T", "A592C", "A604G", "G641T", "A677C", "C713T", "A716G", "T788A", "T917C", "A1017T", "T1037C", "G1090A", "T1100A", "C1103T", "C1187T", "A1196G", "C1295T", "T1322C", "A1367G", "T1446A", "A1457T", "G1458-", "C1459-", "C1460-", "T1484C", "C1491T", "G1526A", "G1562A", "A1588G", "A1607G", "A1616T", "G1619A", "G1673A", "G1690A", "-1746C", "-1747C", "-1748T", "T1752G", "C1754-", "C1755-", "C1756-", "A1762C", "A1828C", "G1840A", "T1895C", "A1990G", "T2087C", "A2212T", "A2215T", "G2221A", "A2248G", "G2275A", "A2311G", "T2440C", "C2453T", "T2608C", "A2612G", "A2626C", "G2662A", "A2713G", "C2720T", "T2749C", "C2806T", "C2822T", "T2863C", "G2926A", "C2927A", "A2929T", "C3006A", "G3085A", "A3088G", "T3112C", "C3133T", "C3140T", "A3151G", "G3173A", "A3192G", "A3200T", "G3236A", "G3334A", "T3505G", "G3617T", "A3655G", "C3691T", "A3793C", "A3794C", "G3836A", "A3876G", "T3967C", "C3995A", "G4268A", "A4397T", "A4549G", "G4622A", "T4676C", "G4677A", "T4678A", "T4679G", "G4696A", "A4737G", "T4769G", "C4914T", "T5006A", "C5051T", "G5069A", "T5072C", "A5085G", "C5162T", "C5237T", "T5275G", "A5282T", "A5293G", "C5306T", "A5312G", "A5345G", "A5397C", "G5448A", "T5492C", "G5535A", "C5556A", "G5561A", "A5587G", "A5611C", "T5616C", "C5621A", "A5628T", "G5635A", "T5641C", "A5643T", "C5663T", "A5664G", "G5665A", "G5736A", "T5739G", "G5741A", "G5781T", "G5791-", "A5792-", "G5793-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "G5799-", "C5801A", "A5802G", "A5803G", "A5805G", "C5806T", "T5808G", "-5809G", "-5810C", "-5811A", "A5848G", "G5858A", "T5861G", "C5866A", "G5917A", "A5918G", "C5920T", "C5924T", "T5956A", "T6025A", "T6030A", "G6055A", "A6059G", "A6066C", "C6110G", "T6133G", "C6148T", "T6163-", "A6164-", "A6165-", "T6166-", "A6167-", "A6168-", "C6169-", "T6171-", "C6172-", "A6173-", "C6174-", "C6175-", "A6176-", "A6177-", "C6178T", "A6179G", "C6181G", "-6183A", "C6186T", "-6189C", "A6192C", "-6195A", "-6196C", "-6198G", "-6200A", "-6201C", "-6203A", "-6204C", "-6205T", "-6206A", "-6207A", "-6208C", "-6209A", "-6210T", "-6211C", "T6213C", "-6214T", "A6259G", "G6267A", "G6273A", "G6276A", "A6303G", "G6325T", "G6326A", "A6328T", "A6336G", "T6337A", "A6338G", "G6339A", "T6340A", "T6409C", "A6450G", "T6460G", "G6466C", "G6569A", "A6574T", "A6576G", "A6577G", "G6583A", "G6593A", "A6606G", "C6619T", "C6636A", "T6643C", "A6647G", "C6660T", "C6692A", "G6716A", "T6763C", "A6776G", "C6790T", "A6810C", "C6812A", "-6830G", "-6832T", "C6840A", "A6841T", "G6854A", "C6855A", "T6856A", "A6877G", "A6881G", "G6905A", "T6916C", "T6932A", "C6936A", "C6937A", "A6958C", "T6961C", "G6962T", "-6967G", "-6977C", "-6978A", "G6996A", "T7003-", "A7007C", "A7013G", "C7014T", "G7048A", "G7072A", "G7101A", "G7102T", "G7106A", "A7107G", "G7145A", "T7153G", "A7154G", "A7155C", "A7216G", "A7269G", "C7313A", "G7322C", "A7428G", "A7519T", "A7522G", "C7582T", "T7618C", "C7655T", "A7685T", "G7702A", "A7773G", "A7782G", "T7796A", "A7799C", "A7801G", "A7822C", "A7837G", "T7877G", "T7879C", "A7887G", "A7903T", "C7936A", "A7962G", "G7977A", "G7992A", "G7995A", "A8023G", "C8047T", "C8146G", "T8155C", "T8164C", "T8172C", "T8182A", "G8201A", "T8214A", "A8222C", "G8228A", "G8263A", "T8290C", "A8326G", "G8329A", "G8349A", "G8354A", "T8366C", "C8386A", "T8387G", "A8400T", "A8409G", "A8447G", "A8502C", "G8503A", "G8506A", "A8536G", "C8543T", "A8652C", "C8661A", "G8666T", "A8701T", "A8718G", "A8719G", "A8739G", "C8747T", "T8775C", "C8792T", "A8851T", "G8861A", "T8864A", "T8887A", "C8906T", "A8915G", "C8921T", "T8939C", "G8942A", "A8947T", "-8971G", "-8974T", "-8975C", "-8976T", "-8978A", "-8979C", "-8980C", "G8983A", "T8986A", "C8992T", "C9028T"], "INT": ["E6D", "K7Q", "A21T", "K34R", "L74M", "V165I", "I208L", "G283S"], "RT-p51": ["K39N", "E40D", "T173A", "E177D", "P243S", "Q278N", "A304E", "A360T", "K366R", "T369S", "V381I"], "RT-p66": ["K39N", "E40D", "T173A", "E177D", "P243S", "Q278N", "A304E", "A360T", "K366R", "T369S", "V381I", "A508S"], "gp120": ["A2T", "S3A", "D4E", "T22A", "D34E", "N57K", "A59D", "M67I", "K69E", "N71T", "Q86E", "S93R", "N104E", "N108-", "T110-", "N112T", "-114S", "-115T", "-116T", "-117N", "-118I", "-119T", "-120M", "-121S", "-123R", "R138K", "R140K", "R141K", "K150R", "K199R", "D202E", "E204D", "E239K", "E240D", "E241G", "E247K", "F249I", "N251S", "A261D", "R265G", "T269I", "A288T", "K308E", "K319T", "T323A", "L325F", "-326D", "K329N", "A334K", "I343V", "G351R", "S360T", "A361K", "E368D", "D370Y", "-372Q", "S373-", "G381E", "T385P", "T387V", "M398I", "M406I", "R416N", "D418S", "G430N", "G431D", "N432E", "N435R", "-436A", "K472R"], "gp41": ["L4I", "V7L", "N42S", "T128S", "N157S", "N160S", "S165T", "K166Q", "S192A", "K195R", "H211Q", "E220G", "G225E", "R231K", "L290S", "A300I", "L304Y", "I307L", "V309I"], "nef": ["G3S", "A15E", "I20L", "T23A", "S54H", "C55Y", "E65G", "K104Q", "Q107K", "E108D", "Y120F", "N126G", "Q170L", "M173I", "D174E", "M182K", "Y202F"], "p17": ["K15Q", "K28Q", "C62G", "T81L", "T84V", "Y86S", "Q90R", "E102D", "K114N"], "p2": ["A12-"], "p24": ["S120N"], "p6": ["R4K", "P23-", "S24P", "-26A", "Q28P", "*50S"], "p7": ["P9S", "K41R"], "pro": ["I64M"], "rev": ["G7D", "T14K", "V16I", "P30T", "I59V", "T62A", "P67S", "P100A", "S103P", "S106P", "S112T"], "tat": ["K7N", "I39T", "R60Q", "S62N", "K71E", "T76N", "K85E"], "vif": ["V31K", "G37E", "I51V", "D61E", "H110Y", "N140K", "K167E"], "vpr": ["H45Y", "I60L", "I63M", "I70V"], "vpu": ["N2H", "V10I", "A19V", "V20I", "D44E", "R45K", "E58D", "N81D"]}, "labels": {"aa": "INT: E6D, K7Q, A21T, K34R, L74M, V165I, I208L, G283S; RT-p51: K39N, E40D, T173A, E177D, P243S, Q278N, A304E, A360T, K366R, T369S, V381I; RT-p66: K39N, E40D, T173A, E177D, P243S, Q278N, A304E, A360T, K366R, T369S, V381I, A508S; gp120: A2T, S3A, D4E, T22A, D34E, N57K, A59D, M67I, K69E, N71T, Q86E, S93R, N104E, N108-, T110-, N112T, -114S, -115T, -116T, -117N, -118I, -119T, -120M, -121S, -123R, R138K, R140K, R141K, K150R, K199R, D202E, E204D, E239K, E240D, E241G, E247K, F249I, N251S, A261D, R265G, T269I, A288T, K308E, K319T, T323A, L325F, -326D, K329N, A334K, I343V, G351R, S360T, A361K, E368D, D370Y, -372Q, S373-, G381E, T385P, T387V, M398I, M406I, R416N, D418S, G430N, G431D, N432E, N435R, -436A, K472R; gp41: L4I, V7L, N42S, T128S, N157S, N160S, S165T, K166Q, S192A, K195R, H211Q, E220G, G225E, R231K, L290S, A300I, L304Y, I307L, V309I; nef: G3S, A15E, I20L, T23A, S54H, C55Y, E65G, K104Q, Q107K, E108D, Y120F, N126G, Q170L, M173I, D174E, M182K, Y202F; p17: K15Q, K28Q, C62G, T81L, T84V, Y86S, Q90R, E102D, K114N; p2: A12-; p24: S120N; p6: R4K, P23-, S24P, -26A, Q28P, *50S; p7: P9S, K41R; pro: I64M; rev: G7D, T14K, V16I, P30T, I59V, T62A, P67S, P100A, S103P, S106P, S112T; tat: K7N, I39T, R60Q, S62N, K71E, T76N, K85E; vif: V31K, G37E, I51V, D61E, H110Y, N140K, K167E; vpr: H45Y, I60L, I63M, I70V; vpu: N2H, V10I, A19V, V20I, D44E, R45K, E58D, N81D"}}}, {"name": "AF460974", "node_attrs": {"div": 0.12930999999999998, "accession": "AF460974", "clade_membership": {"value": "CRF13_cpx"}, "country": {"value": "CM"}, "date": {"value": 1996.0}, "Strain_name": {"value": "96CM_4164"}, "LANL_subtype": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G202A", "G481C", "G519T", "A521C", "G647A", "A658G", "G755A", "T788C", "G977A", "C988A", "A1017C", "A1077G", "A1097C", "A1101G", "C1136T", "A1157G", "G1184A", "G1247A", "A1433C", "C1456T", "G1458A", "C1460A", "C1478T", "A1497G", "T1502G", "C1536G", "A1616G", "T1653C", "G1727C", "T1782C", "C1853T", "A1966C", "A1982T", "G1984A", "G2156A", "T2158C", "T2315C", "C2460T", "T2476C", "C2536T", "A2715G", "G2716T", "C2822G", "A2825G", "C2848T", "C2885T", "A2989G", "A3043G", "G3093A", "A3099G", "C3174T", "G3221A", "G3264A", "G3293A", "T3294C", "C3307A", "C3346T", "A3370G", "G3427A", "G3439A", "A3568C", "T3628C", "A3727G", "A3805T", "G3816A", "G3834A", "G3925A", "A4051G", "A4130G", "C4140T", "C4428T", "T4606G", "A4688G", "T4727G", "C4761T", "T4805C", "G4856A", "T4912C", "A4952T", "A5015G", "A5058C", "T5081C", "G5199A", "T5203C", "G5225A", "A5277T", "T5311C", "A5360G", "A5415C", "T5457C", "A5555G", "G5565A", "A5567G", "C5590T", "C5620T", "C5639G", "A5659G", "T5660C", "A5700G", "G5712T", "G5748A", "A5865G", "A5907G", "G5954A", "A5955C", "T6025C", "T6026A", "A6061C", "G6067T", "A6086G", "C6087A", "T6151G", "-6170G", "-6183T", "A6188-", "C6190-", "A6191-", "A6192-", "C6193-", "A6194-", "A6197-", "C6199-", "C6202-", "-6214A", "A6215T", "T6216C", "G6222A", "A6226T", "T6385C", "A6406T", "G6464A", "A6578G", "A6582T", "A6599T", "A6605G", "C6612T", "C6637T", "G6644A", "T6733A", "C6758T", "G6774A", "T6793G", "C6800G", "C6822A", "T6824C", "T6827C", "-6830A", "-6832C", "T6838G", "A6848G", "G6875A", "A6957C", "G6980A", "G6981A", "T6983G", "-6998T", "-6999C", "-7000A", "-7001A", "-7002A", "T7047A", "G7054A", "G7067T", "G7094A", "T7095C", "T7144G", "T7153C", "A7154C", "A7155T", "G7289A", "T7309G", "A7318G", "G7423A", "A7533G", "T7622A", "A7676G", "G7677A", "A7679C", "T7681G", "G7688A", "T7692C", "T7783C", "A7801C", "G7873A", "C7874A", "A7880G", "G7888T", "A7903G", "A7935G", "C7937A", "A7964G", "G7965A", "C8033A", "G8055A", "C8065T", "C8131G", "T8167C", "G8317A", "G8388A", "C8437T", "G8479A", "G8501A", "A8537T", "T8646C", "G8666A", "G8732A", "C8853T", "G8875A", "A8918G", "C8948T", "G8970A", "-8971C", "T8972A", "A8977-", "A8981-", "G8982-", "G8983-", "A8984-", "C8985-", "T8986-", "T8987-"], "INT": ["E10D", "R14K", "R20K", "M50I", "S119G", "T122I", "T218I"], "RT-p51": ["V21I", "A122V", "K207S", "P243A", "I244V", "G333E", "E335G", "A360V", "A376T", "R390K", "V400T", "D404E"], "RT-p66": ["V21I", "A122V", "K207S", "P243A", "I244V", "G333E", "E335G", "A360V", "A376T", "R390K", "V400T", "D404E"], "gp120": ["D4G", "K18R", "D34T", "L58M", "A59V", "K69N", "T78E", "N105-", "I106-", "T107-", "-109V", "-111N", "N113I", "-114T", "-115I", "-116S", "-123K", "E124D", "E204K", "I242V", "K243M", "N251D", "A253V", "V264I", "A291T", "T292G", "D294I", "H302Y", "R307K", "Q316E", "K320Q", "T323E", "Y324H", "I332V", "V341I", "A361T", "E368A", "-372K", "S373A", "G376-", "S377-", "-382S", "-383N", "M398K", "A405S", "V414T", "N434L", "-436E", "N437T", "E438-", "T439-", "A479T"], "gp41": ["K77R", "S107T", "S125D", "N126Q", "D129N", "I130T", "K166N", "L191I", "I193V", "K195N", "H211R", "P212T", "R221E", "D230G", "L244I", "S251N", "A300V", "L304F"], "nef": ["V16I", "A32V", "S46N", "E65D", "Y102H", "V133I", "H171Y", "R178K"], "p1": ["S8P"], "p17": ["G49A", "Q108R"], "p2": ["A7V", "G9-", "A10-"], "p24": ["P86Q", "T116A", "I124V"], "p7": ["R11G", "S12R", "L24V"], "pro": ["M62L"], "rev": ["T14A", "R17K", "I18V", "P30H", "K39R", "T62D", "L73F", "Q95E", "S107P"], "tat": ["Q13H", "N64S", "Q72*", "T76A", "E86K"], "vif": ["V7G", "N47K", "M109T", "K122N", "K158Q"], "vpr": ["R32K", "G41S", "E58V"], "vpu": ["Q5S", "A11G", "I18A", "K35N"]}, "labels": {"aa": "INT: E10D, R14K, R20K, M50I, S119G, T122I, T218I; RT-p51: V21I, A122V, K207S, P243A, I244V, G333E, E335G, A360V, A376T, R390K, V400T, D404E; RT-p66: V21I, A122V, K207S, P243A, I244V, G333E, E335G, A360V, A376T, R390K, V400T, D404E; gp120: D4G, K18R, D34T, L58M, A59V, K69N, T78E, N105-, I106-, T107-, -109V, -111N, N113I, -114T, -115I, -116S, -123K, E124D, E204K, I242V, K243M, N251D, A253V, V264I, A291T, T292G, D294I, H302Y, R307K, Q316E, K320Q, T323E, Y324H, I332V, V341I, A361T, E368A, -372K, S373A, G376-, S377-, -382S, -383N, M398K, A405S, V414T, N434L, -436E, N437T, E438-, T439-, A479T; gp41: K77R, S107T, S125D, N126Q, D129N, I130T, K166N, L191I, I193V, K195N, H211R, P212T, R221E, D230G, L244I, S251N, A300V, L304F; nef: V16I, A32V, S46N, E65D, Y102H, V133I, H171Y, R178K; p1: S8P; p17: G49A, Q108R; p2: A7V, G9-, A10-; p24: P86Q, T116A, I124V; p7: R11G, S12R, L24V; pro: M62L; rev: T14A, R17K, I18V, P30H, K39R, T62D, L73F, Q95E, S107P; tat: Q13H, N64S, Q72*, T76A, E86K; vif: V7G, N47K, M109T, K122N, K158Q; vpr: R32K, G41S, E58V; vpu: Q5S, A11G, I18A, K35N"}}}]}]}, {"name": "CRF13_cpx_NODE_0000006", "node_attrs": {"div": 0.10004, "clade_membership": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G519A", "G2459A", "A3211G", "G5199A", "G5712T", "-6170A", "-6189T", "-6218G", "A6599T", "T6793C", "-6831G", "-6832A", "-6967T", "-6970C", "-6971A", "-6972G", "-6973C", "-6974A", "-6975C", "G7440T", "G7992A", "C8220G", "C8992T"], "RT-p51": ["E122K"], "RT-p66": ["E122K"], "gp120": ["K329T", "-374T", "-433N"], "gp41": ["R46M", "I130T", "L290V", "T306S"], "nef": ["T51-"], "vpr": ["R32K"]}, "labels": {"aa": "RT-p51: E122K; RT-p66: E122K; gp120: K329T, -374T, -433N; gp41: R46M, I130T, L290V, T306S; nef: T51-; vpr: R32K"}}, "children": [{"name": "CRF13_cpx_NODE_0000007", "node_attrs": {"div": 0.10412, "clade_membership": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "G518A", "G695A", "C1316T", "C1362T", "G1697A", "C1714A", "C1745A", "-1746G", "-1747C", "-1748C", "G1972A", "T2101A", "A2590G", "A2743T", "G3523A", "T3551C", "G3816A", "G4677A", "T4769G", "G4784A", "C5556T", "T5579C", "G6055A", "T6166G", "C6178T", "A6192C", "-6198A", "-6200A", "-6201T", "-6214C", "-6216C", "G6327A", "C6412A", "G6694T", "A6781G", "-6830G", "A6836G", "A6950G", "G6956A", "A6957G", "-6969A", "-6976G", "G7048A", "A7123G", "G7270A", "A7533G", "A7685T", "T7692C", "A8130G", "T8171G", "A8308G"], "INT": ["R14K"], "gp120": ["M67I", "-111N", "N113I", "E154V", "G158E", "-326G", "T366A", "E368R", "N397K", "M398L", "K472R"], "gp41": ["K77R", "T128S", "L277S"], "nef": ["T23A"], "p17": ["V7I"], "p6": ["A12E"], "rev": ["T14I", "V108G"], "tat": ["L68P"], "vif": ["V31I", "D61E"]}, "labels": {"aa": "INT: R14K; gp120: M67I, -111N, N113I, E154V, G158E, -326G, T366A, E368R, N397K, M398L, K472R; gp41: K77R, T128S, L277S; nef: T23A; p17: V7I; p6: A12E; rev: T14I, V108G; tat: L68P; vif: V31I, D61E"}}, "children": [{"name": "AY371154", "node_attrs": {"div": 0.13676, "accession": "AY371154", "clade_membership": {"value": "CRF13_cpx"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CM_3226MN"}, "LANL_subtype": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A379G", "G398A", "A417C", "G424A", "T486C", "A495G", "C516A", "C535T", "T536A", "T570C", "A592G", "T593G", "G608A", "A619G", "A643C", "G647A", "A676G", "T718C", "A776C", "T852A", "A857C", "C897T", "G941A", "G968A", "A978C", "C988T", "C1002A", "T1037C", "A1079G", "G1090A", "G1192A", "A1271T", "A1337G", "A1346G", "T1385C", "A1464C", "C1478T", "A1588G", "A1616G", "G1619A", "A1643G", "A1660G", "A1661T", "G1690A", "A1691G", "G1725A", "C1730T", "A1733-", "G1734-", "A1735-", "G1736A", "A1740G", "T1741A", "G1743A", "C1767-", "C1768-", "G1769-", "A1858G", "G1912A", "A1988C", "T2013C", "A2108G", "A2152T", "A2154G", "T2299C", "T2302C", "T2383C", "G2462A", "A2498G", "G2539A", "A2557G", "A2563C", "A2579T", "C2584T", "C2613T", "A2665G", "A2695G", "G2704A", "T2737A", "A2919G", "C2927A", "A2929C", "C2975T", "A3163G", "G3173A", "A3193G", "A3238G", "G3264A", "A3292C", "C3307A", "T3308C", "T3355C", "T3449A", "C3500T", "A3508G", "A3514C", "A3539C", "C3545T", "G3595A", "T3628C", "C3649T", "C3691T", "C3692T", "T3754C", "G3825A", "G3925A", "T3976C", "A4105G", "C4141A", "G4228A", "A4376G", "C4428T", "A4582G", "T4606C", "T4679C", "C4857T", "A4877G", "C4965T", "C4976A", "A5004T", "A5005C", "A5042C", "A5046G", "C5051T", "A5086C", "T5182A", "C5242T", "C5248T", "G5257A", "A5278G", "G5289A", "A5296G", "T5382C", "A5397C", "A5447C", "T5492C", "A5496C", "A5574G", "G5581A", "T5600A", "-5603T", "C5620T", "A5629G", "T5712A", "A5717G", "G5748T", "G5781A", "A5825G", "A5848G", "A5849C", "T5857A", "G5893A", "A5907G", "A5908G", "C5920T", "C5923T", "G5948A", "A5955C", "C6007T", "C6010T", "T6025A", "T6030C", "C6039A", "A6044G", "T6046A", "G6076A", "T6085G", "A6165T", "C6175T", "-6180A", "-6183T", "A6186C", "C6193T", "-6195A", "-6196T", "T6213C", "G6218T", "A6219C", "A6221G", "C6256T", "G6280T", "G6303A", "C6482T", "C6563A", "G6566T", "A6576G", "A6578G", "A6606G", "T6643A", "C6670T", "C6673T", "G6693A", "T6745C", "C6752G", "A6753C", "A6773G", "G6774A", "A6776G", "A6777G", "A6789G", "G6802A", "A6811T", "C6812A", "A6821C", "T6824A", "G6829A", "A6837G", "T6838A", "T6859A", "A6900C", "C6964T", "-6968A", "-6977C", "-6978A", "-6979G", "C6993A", "-6994T", "T7003-", "G7004-", "A7007-", "T7009-", "T7045G", "A7046C", "A7057G", "A7060G", "T7105C", "G7145A", "G7146A", "A7152G", "T7153A", "A7155C", "T7156A", "A7160G", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "C7201T", "G7288A", "G7304A", "G7366A", "A7375G", "G7423A", "T7462C", "A7517C", "A7519G", "A7523G", "T7656G", "C7678T", "T7681G", "G7688T", "A7750G", "A7818G", "G7831A", "G7841A", "G7862T", "T7913G", "C7936A", "G7977A", "C8047T", "C8095A", "G8105A", "G8143A", "C8149T", "T8167A", "G8184A", "A8228G", "G8231A", "T8265C", "G8317A", "T8348G", "G8354A", "A8364C", "C8386A", "T8387G", "G8388A", "A8406C", "G8407C", "A8409G", "G8421A", "C8425T", "A8484G", "C8488G", "G8499A", "G8503A", "G8534A", "A8537C", "G8554A", "C8699T", "A8701T"], "INT": ["S17N", "M50I", "I201V", "T218I"], "RT-p51": ["I5V", "K20R", "D123N", "I135V", "S162C", "T173I", "F214L", "K275R", "Q278N", "P294S", "A360T", "R390K", "E399D", "D404E", "Y405H"], "RT-p66": ["I5V", "K20R", "D123N", "I135V", "S162C", "T173I", "F214L", "K275R", "Q278N", "P294S", "A360T", "R390K", "E399D", "D404E", "Y405H", "L452I", "I482L"], "gp120": ["S1R", "K18R", "A32T", "D34A", "N57K", "G59A", "T62K", "N64E", "N71K", "H77Q", "N104M", "-109N", "-114T", "-115T", "-116S", "-117G", "-118E", "E124-", "Q142H", "P210S", "L237I", "A238S", "E241G", "I242V", "N251S", "R280H", "Q300A", "R307E", "K308G", "N312S", "K319D", "K323Q", "Y324N", "N328G", "N335K", "I343V", "N349T", "-372N", "-375Q", "T380-", "G430A", "G431E", "N432G", "N435R", "-436T"], "gp41": ["A1T", "I72L", "R74G", "L118R", "N126K", "D129Y", "K172R", "M176I", "G180S", "V187F", "L204V", "H211P", "P212Q", "Q213R", "G225E", "A268T", "R294Q", "S302T", "I309V", "A310T", "I321T"], "nef": ["S8R", "A15E", "V16I", "R22K", "A27T", "T28I", "M48V", "-49G", "E53K", "T56A", "E65D", "R71K", "Y120F"], "p1": ["K10S"], "p17": ["K15R", "K28Q", "R30K", "T54A", "L61I", "S67L", "Y79H", "Y86W", "K95R", "E103A", "K114R", "V128A"], "p2": ["M14L"], "p24": ["S41T", "P86L", "S120N", "R154K", "E180D"], "p6": ["R4K", "G16R", "I21T", "P30-"], "p7": ["K41R"], "pro": ["I20M", "I64L", "I72T"], "rev": ["K20R", "P30T", "P67S", "L83I", "S86N", "G99R", "Q101*", "S107T"], "tat": ["K7N", "K24T", "I39T", "V69I", "T76N", "N80G", "Q81N"], "vif": ["V7A", "H127Y", "S130R", "N140S", "I154V", "K167T"], "vpr": ["R62K", "S93P"], "vpu": ["Q5S", "S8G", "K37R", "R47S", "N73S", "N81A"]}, "labels": {"aa": "INT: S17N, M50I, I201V, T218I; RT-p51: I5V, K20R, D123N, I135V, S162C, T173I, F214L, K275R, Q278N, P294S, A360T, R390K, E399D, D404E, Y405H; RT-p66: I5V, K20R, D123N, I135V, S162C, T173I, F214L, K275R, Q278N, P294S, A360T, R390K, E399D, D404E, Y405H, L452I, I482L; gp120: S1R, K18R, A32T, D34A, N57K, G59A, T62K, N64E, N71K, H77Q, N104M, -109N, -114T, -115T, -116S, -117G, -118E, E124-, Q142H, P210S, L237I, A238S, E241G, I242V, N251S, R280H, Q300A, R307E, K308G, N312S, K319D, K323Q, Y324N, N328G, N335K, I343V, N349T, -372N, -375Q, T380-, G430A, G431E, N432G, N435R, -436T; gp41: A1T, I72L, R74G, L118R, N126K, D129Y, K172R, M176I, G180S, V187F, L204V, H211P, P212Q, Q213R, G225E, A268T, R294Q, S302T, I309V, A310T, I321T; nef: S8R, A15E, V16I, R22K, A27T, T28I, M48V, -49G, E53K, T56A, E65D, R71K, Y120F; p1: K10S; p17: K15R, K28Q, R30K, T54A, L61I, S67L, Y79H, Y86W, K95R, E103A, K114R, V128A; p2: M14L; p24: S41T, P86L, S120N, R154K, E180D; p6: R4K, G16R, I21T, P30-; p7: K41R; pro: I20M, I64L, I72T; rev: K20R, P30T, P67S, L83I, S86N, G99R, Q101*, S107T; tat: K7N, K24T, I39T, V69I, T76N, N80G, Q81N; vif: V7A, H127Y, S130R, N140S, I154V, K167T; vpr: R62K, S93P; vpu: Q5S, S8G, K37R, R47S, N73S, N81A"}}}, {"name": "DQ845386", "node_attrs": {"div": 0.13689, "accession": "DQ845386", "clade_membership": {"value": "CRF13_cpx"}, "country": {"value": "CM"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04CM_173_9"}, "LANL_subtype": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G83A", "C84T", "C207T", "A368G", "A378C", "A386G", "A440G", "A446G", "G520C", "T549A", "G579A", "A604G", "C657A", "A693G", "G694C", "T698A", "G699A", "A700C", "G703C", "A705-", "C714G", "C767T", "G791A", "G908A", "C988A", "T1003A", "A1024C", "A1101G", "A1157G", "A1190C", "T1262C", "A1263T", "C1330A", "A1418G", "T1421G", "C1460A", "A1486G", "T1501A", "T1505C", "G1657A", "C1749T", "C1826T", "A1839G", "C1913A", "T2062C", "G2134A", "A2211G", "A2222G", "T2251A", "A2293G", "A2398G", "C2449T", "C2464T", "G2518A", "C2536T", "G2578A", "A2612G", "T2708C", "A2714C", "G2727A", "C2776T", "A2836T", "T2899C", "A2932G", "A3071G", "A3096T", "A3099G", "T3210G", "C3212A", "A3213G", "A3216G", "G3229A", "G3276A", "C3322A", "T3399C", "A3481G", "A3529G", "T3566C", "G3581A", "G3631A", "G3667A", "A3796G", "A3805T", "T3967C", "C3995A", "G3997A", "G4092C", "A4130C", "G4131C", "T4204C", "C4286T", "C4288T", "G4498A", "A4519G", "G4573A", "G4631A", "C4645A", "T4656C", "C4667T", "G4692A", "A4695G", "C4721T", "A4735G", "A4774G", "G4859A", "A4861G", "A4950G", "A4951G", "T5018C", "A5049C", "A5085C", "T5095C", "G5128A", "A5143G", "G5176A", "C5213A", "C5227A", "T5254C", "A5277G", "G5308T", "A5336G", "T5351C", "G5352A", "G5427A", "G5437C", "A5545G", "C5554T", "G5558A", "A5567G", "T5568C", "T5602A", "-5603A", "C5621A", "C5639G", "G5650A", "T5658C", "C5704G", "G5707T", "A5710C", "G5751A", "A5817G", "T5899A", "G5915A", "G5917T", "T6030G", "C6064T", "A6065G", "A6088T", "T6091C", "C6110G", "C6115T", "A6131C", "G6132A", "T6133G", "G6149A", "A6159C", "A6179-", "C6181-", "A6182-", "C6184-", "A6191T", "-6195G", "-6196G", "A6197G", "-6203A", "-6204T", "-6205T", "-6206G", "-6207G", "-6208T", "-6209A", "-6210A", "-6211C", "G6217T", "G6222A", "A6228G", "G6261A", "A6262T", "T6271C", "C6278G", "C6305A", "T6306C", "G6325T", "G6326A", "A6328T", "A6336G", "A6371G", "G6430A", "G6451A", "T6457G", "A6508G", "T6541C", "A6568G", "G6575A", "A6581C", "G6631A", "C6636T", "A6639C", "G6640T", "-6697C", "A6703-", "G6716A", "A6757C", "T6772C", "A6776C", "C6797A", "A6798C", "C6807T", "G6809A", "A6813G", "A6821G", "A6823C", "C6826T", "A6832C", "T6875G", "A6877G", "G6881A", "C6936A", "C6937A", "C6949T", "T6952A", "A6963G", "C6964G", "T6967C", "C6970G", "C6973T", "A6974G", "-6977G", "A6987C", "G6989A", "-7000A", "-7001A", "-7002G", "-7005A", "-7006A", "-7008A", "T7037A", "T7045A", "A7046T", "A7063G", "A7066G", "G7072A", "T7147G", "G7197A", "C7373T", "A7402G", "C7411T", "C7429T", "T7432C", "C7463A", "G7477A", "A7583G", "A7616C", "T7622A", "C7623A", "A7626T", "G7631C", "T7681C", "T7715G", "G7720A", "A7790G", "C7805T", "T7843C", "A7903G", "C7939T", "A7964G", "G7995A", "A7998G", "G8017C", "A8032G", "C8033A", "G8061T", "C8065T", "G8144A", "T8172C", "T8182G", "C8183A", "T8203C", "A8207T", "C8213T", "T8214A", "G8393A", "A8396G", "C8425A", "A8426C", "G8427A", "A8429G", "A8455C", "A8458G", "G8502A", "G8508A", "A8656G", "G8666C", "C8684T", "C8702T", "A8794G", "C8809A", "C8810G", "G8814A", "A8870T", "A8873G", "G8875A", "A8882C", "T8887G", "T8903C", "A8922G", "T8939C", "C8957T", "A8967G", "-8971A", "-8974G", "-8976T", "-8978C", "-8979A", "A8984G", "C8985G", "G9026A"], "INT": ["E10D", "L74I", "G106A", "S119P", "H171Y", "D286N"], "RT-p51": ["K39R", "K43E", "T173A", "K207Q", "R211K", "I326V", "Q334L", "E335G", "V372G", "Q373R", "K374R", "R394Q", "L435P"], "RT-p66": ["K39R", "K43E", "T173A", "K207Q", "R211K", "I326V", "Q334L", "E335G", "V372G", "Q373R", "K374R", "R394Q", "L435P", "S491P", "V496I"], "gp120": ["E21N", "N71E", "Q86E", "S93Q", "V99I", "N102T", "N104-", "N105-", "I106-", "T107K", "-109I", "-114S", "-115R", "-116D", "-117I", "-118I", "-119G", "-120I", "-121T", "-122E", "-123K", "E125G", "G136D", "Q142E", "K150R", "L151T", "E157D", "N159-", "S160-", "N161-", "S162-", "I173V", "N201K", "E241K", "K243Q", "A261V", "K262T", "A288T", "K308Q", "Q315T", "A318V", "K320R", "K323D", "N328D", "L341V", "A361E", "D370G", "N378T", "-379N", "-383S", "D384E", "F395I", "M406I", "-436K", "N437T", "R448K"], "gp41": ["L54M", "T94A", "N105H", "S107N", "Q108L", "E110Q", "S138A", "N163D", "R221G", "R231K", "D232G", "L244I", "C253F", "G281S", "V290A", "L304Y"], "nef": ["P25S", "D38A", "K39R", "D54S", "K105R", "E108D", "K151R", "A156E", "E158K", "E176D", "R178K", "M182R", "I194V"], "p1": ["S9N"], "p17": ["K15Q", "R62T", "S72T", "V82I", "Q90R", "E102-", "E103-", "V104-", "E105-", "K106E", "A107E", "Q108V", "K109E", "N110K", "S111A", "Q112K", "Q113K", "R120A", "N124-", "Q127E"], "p24": ["L83I", "P86Q", "I91H", "E98A", "I124V", "T178S", "T200N"], "p6": ["P23A", "P25S", "-26P"], "p7": ["K7R", "I12N"], "pro": ["K14R", "P39T"], "rev": ["A15T", "I18A", "P31S", "K39R", "E57Q", "T62D", "L73F", "G99E", "S112E"], "tat": ["A21P", "R57G", "H60Y", "S61N", "N64S", "P77L"], "vif": ["T20K", "G36R", "R37G", "K50R", "K63R", "K92R", "K122G", "N155H", "K167Q", "V170A", "R181K", "N186S"], "vpr": ["P37T", "E58G", "V83I"], "vpu": ["A11G", "A15T", "L33V", "V34L", "K35H"]}, "labels": {"aa": "INT: E10D, L74I, G106A, S119P, H171Y, D286N; RT-p51: K39R, K43E, T173A, K207Q, R211K, I326V, Q334L, E335G, V372G, Q373R, K374R, R394Q, L435P; RT-p66: K39R, K43E, T173A, K207Q, R211K, I326V, Q334L, E335G, V372G, Q373R, K374R, R394Q, L435P, S491P, V496I; gp120: E21N, N71E, Q86E, S93Q, V99I, N102T, N104-, N105-, I106-, T107K, -109I, -114S, -115R, -116D, -117I, -118I, -119G, -120I, -121T, -122E, -123K, E125G, G136D, Q142E, K150R, L151T, E157D, N159-, S160-, N161-, S162-, I173V, N201K, E241K, K243Q, A261V, K262T, A288T, K308Q, Q315T, A318V, K320R, K323D, N328D, L341V, A361E, D370G, N378T, -379N, -383S, D384E, F395I, M406I, -436K, N437T, R448K; gp41: L54M, T94A, N105H, S107N, Q108L, E110Q, S138A, N163D, R221G, R231K, D232G, L244I, C253F, G281S, V290A, L304Y; nef: P25S, D38A, K39R, D54S, K105R, E108D, K151R, A156E, E158K, E176D, R178K, M182R, I194V; p1: S9N; p17: K15Q, R62T, S72T, V82I, Q90R, E102-, E103-, V104-, E105-, K106E, A107E, Q108V, K109E, N110K, S111A, Q112K, Q113K, R120A, N124-, Q127E; p24: L83I, P86Q, I91H, E98A, I124V, T178S, T200N; p6: P23A, P25S, -26P; p7: K7R, I12N; pro: K14R, P39T; rev: A15T, I18A, P31S, K39R, E57Q, T62D, L73F, G99E, S112E; tat: A21P, R57G, H60Y, S61N, N64S, P77L; vif: T20K, G36R, R37G, K50R, K63R, K92R, K122G, N155H, K167Q, V170A, R181K, N186S; vpr: P37T, E58G, V83I; vpu: A11G, A15T, L33V, V34L, K35H"}}}]}, {"name": "CRF13_cpx_NODE_0000008", "node_attrs": {"div": 0.10465, "clade_membership": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T305A", "T422C", "G694A", "C974T", "G1657A", "G1766A", "A2498G", "A2579T", "G2710A", "C3232T", "A3532G", "T3924C", "C4428T", "G4835A", "A4937C", "C5091T", "C5221T", "G5437C", "A5710C", "G5793A", "A5907G", "A5947G", "G6067T", "A6179G", "A6215C", "-6216A", "T6315A", "T6370C", "A6573G", "T6733G", "G6742A", "A6810C", "-6830A", "A6861C", "-6968G", "-6979A", "-6994A", "-6995G", "-6997G", "-6998T", "-6999C", "-7000A", "-7001A", "-7002A", "-7006C", "A7148G", "G7197A", "A7225G", "G7423A", "G7508A", "A7673G", "A8014G", "A8735G", "T8864G", "G8917A"], "INT": ["M50T", "T218I"], "RT-p51": ["I135V", "S162C"], "RT-p66": ["I135V", "S162C"], "gp120": ["K18R", "D34S", "N112I", "K150R", "E240G", "-326K", "I343V", "-382S", "-383N", "R448K"], "gp41": ["V69I", "I124V", "S302T"], "nef": ["E108D", "D174E", "R192K"], "p1": ["S9N"], "p17": ["R120K"], "p6": ["E6G"], "rev": ["S56G"], "tat": ["A21P"], "vif": ["E117D"], "vpu": ["K35H"]}, "labels": {"aa": "INT: M50T, T218I; RT-p51: I135V, S162C; RT-p66: I135V, S162C; gp120: K18R, D34S, N112I, K150R, E240G, -326K, I343V, -382S, -383N, R448K; gp41: V69I, I124V, S302T; nef: E108D, D174E, R192K; p1: S9N; p17: R120K; p6: E6G; rev: S56G; tat: A21P; vif: E117D; vpu: K35H"}}, "children": [{"name": "MH705141", "node_attrs": {"div": 0.14051000000000002, "accession": "MH705141", "clade_membership": {"value": "CRF13_cpx"}, "country": {"value": "CM"}, "date": {"value": 2006.0}, "Strain_name": {"value": "363_24"}, "LANL_subtype": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C151-", "T200C", "C213T", "T214A", "A215G", "-217A", "A224G", "T227A", "-256A", "C258T", "G261A", "G278A", "G280-", "G286A", "A301G", "G407A", "G413A", "A423C", "A431G", "C476T", "C516A", "G520T", "A521G", "A548G", "A571T", "A584C", "G607A", "G647A", "C665T", "A673G", "T718G", "T728C", "A776C", "G837A", "T852A", "A857C", "G869A", "T895C", "T947C", "A1035G", "T1037C", "G1064A", "A1077G", "C1094T", "A1134G", "G1192A", "C1211T", "A1250G", "A1271G", "A1279G", "G1339A", "A1464C", "A1474G", "A1475G", "T1501G", "G1673A", "T1682C", "A1691G", "A1696G", "G1697A", "A1700G", "G1704A", "C1706A", "C1710A", "C1724T", "G1736A", "A1879G", "A1903C", "G1920A", "A2002G", "T2013C", "C2206T", "A2222C", "T2365C", "G2428A", "T2452G", "C2464G", "C2467T", "C2533T", "C2615A", "T2672C", "G2686A", "T2689C", "A2726G", "G2837A", "C3013T", "A3109C", "C3139T", "A3205C", "C3223T", "C3268T", "C3275A", "G3293A", "C3307A", "T3334A", "A3382G", "G3439A", "A3447G", "G3457A", "G3544T", "T3550C", "T3566C", "C3577T", "G3581A", "G3630A", "A3642T", "A3684G", "A3697C", "C3712T", "A3756G", "G3766A", "G3834A", "G3866A", "T3967C", "T3970C", "C3994T", "C4042T", "G4092C", "A4106C", "C4140T", "C4180T", "T4204C", "C4286T", "A4391T", "C4396A", "C4501T", "G4631A", "G4696A", "T4769G", "C4786T", "A4806C", "T4826C", "C4857T", "A4860G", "A4861G", "T4925C", "T4932A", "A4952T", "A5007C", "T5018C", "T5043C", "C5051A", "G5066A", "A5119G", "A5191G", "G5225A", "G5276C", "T5281C", "A5336C", "A5397G", "A5432C", "G5448T", "T5492C", "C5495A", "A5555C", "C5556A", "T5599A", "T5600A", "-5603A", "A5612T", "C5621A", "A5643G", "T5645C", "T5654C", "C5663T", "G5665A", "A5687T", "A5689T", "G5699A", "G5706A", "A5709G", "G5715A", "A5746G", "T5808G", "A5816G", "G5823T", "A5824G", "T5851G", "T5857A", "C5878T", "G5915A", "G5917T", "C5924T", "G5954A", "A5955G", "A6044G", "G6055A", "T6133C", "C6139T", "C6145T", "A6165C", "T6166A", "A6167G", "C6169G", "A6170G", "T6171A", "C6172G", "C6174A", "-6180G", "C6181A", "-6183C", "C6184A", "C6187A", "T6189A", "C6190T", "-6195C", "-6196T", "A6197G", "-6198C", "C6202-", "-6214G", "A6221G", "A6225G", "A6283G", "A6324G", "G6327A", "G6345A", "C6469T", "C6482A", "C6483A", "A6535G", "A6544G", "C6545T", "G6575A", "A6576C", "A6578G", "A6580G", "A6581C", "A6606G", "G6648A", "C6660T", "C6665T", "C6666T", "G6743A", "A6753T", "A6773G", "G6774A", "A6788G", "C6790A", "G6809A", "C6812G", "T6824C", "A6842G", "C6843A", "G6854A", "C6855A", "T6856G", "C6860T", "G6871A", "C6885T", "T6898C", "T6922C", "C6936G", "C6951G", "C6966A", "-6969C", "G6989A", "-6996A", "-7005C", "-7008A", "G7026A", "A7046G", "G7048A", "C7087T", "C7088G", "A7089C", "G7094T", "G7102A", "C7114T", "C7127T", "G7142A", "G7143A", "G7146A", "T7147G", "A7149G", "T7156C", "A7158G", "T7159G", "A7161C", "G7162A", "C7164A", "T7180C", "T7192C", "G7269A", "C7328A", "C7373T", "C7436T", "C7463T", "A7471G", "A7583C", "G7627A", "A7633C", "T7642G", "T7692C", "A7790G", "A7801T", "A7887G", "A7918G", "C7969A", "G7977A", "A7998G", "G8079A", "C8080A", "G8143A", "A8173G", "T8206A", "A8224C", "T8243G", "G8263A", "A8264G", "G8267T", "G8268T", "A8276C", "T8290C", "C8323T", "C8342T", "C8386A", "G8407A", "A8455C", "G8469A", "A8474C", "G8487A", "G8503C", "A8531T", "A8567G", "G8590C", "A8591G", "G8666T", "G8678A", "A8701T", "G8739A", "G8804A", "G8830T", "G8848A", "T8887G", "G8933A", "A8954G", "-8971A", "-8974T", "-8976T", "-8978A", "-8979C", "A8980T", "T8986A", "T8988-"], "INT": ["R20K", "V31I", "G106A", "K111Q", "T122I", "H171Y", "T206S", "D207E", "D286N"], "RT-p51": ["K43Q", "D123E", "Q174K", "R211G", "D248N", "E370D", "V400I", "D404E", "D413E"], "RT-p66": ["K43Q", "D123E", "Q174K", "R211G", "D248N", "E370D", "V400I", "D404E", "D413E", "K451R", "Q483H", "S491P", "V496I", "R512K", "E516V", "K530R", "N554S"], "gp120": ["S1R", "E21N", "G59V", "N64D", "M67I", "N104T", "T107K", "-109N", "-111A", "I112M", "N113Q", "-122E", "-123G", "E124G", "E157G", "G158E", "R164K", "P210K", "E241T", "I242V", "K243Q", "N251S", "R265K", "T269I", "P271F", "D297N", "Q300L", "R307E", "N312E", "K319T", "K320E", "Y324H", "K326R", "T330E", "A334K", "H336S", "T344I", "A361G", "T366S", "T371N", "-372A", "-379N", "-381E", "D384A", "R391K", "M398V", "Q412A", "V414L", "G430N", "G431E", "N432G", "N435R", "-436T"], "gp41": ["L9I", "T94P", "E110D", "D113E", "N163D", "K166N", "K195R", "G225E", "D232G", "R259Q", "V290L", "W314G", "I321V", "G322L", "I325L"], "nef": ["A15D", "R22K", "D38A", "V43I", "-51T", "D54A", "T56A", "E63D", "G83A", "Y120F", "V133I", "C163F", "S169N", "M182R"], "p17": ["L61M", "R62M", "Y79F", "R91K", "Q113R", "V128G"], "p2": ["M14L"], "p24": ["V36I", "S41T", "M55T", "L83I", "I91L", "S102G", "T116A", "I135V", "R154K", "N183S", "R203K"], "p6": ["A9T", "P11T"], "p7": ["K3R", "I12S"], "pro": ["E35D", "R41K", "I72T"], "rev": ["T14Q", "L78I", "G99R", "I109V"], "tat": ["K19T", "K24N", "I39T", "T40K", "H60P", "S87*"], "vif": ["R37K", "D61E", "T67I", "T74P", "K92G", "S116T", "K122N", "K141Q", "N155K", "Q178R"], "vpr": ["G41S", "E58Q", "Q77H"], "vpu": ["N2I", "I13T", "F16S", "A19V", "V20I", "Y27F", "I28L", "R31K", "R47G", "E70G", "N73D", "L82V"]}, "labels": {"aa": "INT: R20K, V31I, G106A, K111Q, T122I, H171Y, T206S, D207E, D286N; RT-p51: K43Q, D123E, Q174K, R211G, D248N, E370D, V400I, D404E, D413E; RT-p66: K43Q, D123E, Q174K, R211G, D248N, E370D, V400I, D404E, D413E, K451R, Q483H, S491P, V496I, R512K, E516V, K530R, N554S; gp120: S1R, E21N, G59V, N64D, M67I, N104T, T107K, -109N, -111A, I112M, N113Q, -122E, -123G, E124G, E157G, G158E, R164K, P210K, E241T, I242V, K243Q, N251S, R265K, T269I, P271F, D297N, Q300L, R307E, N312E, K319T, K320E, Y324H, K326R, T330E, A334K, H336S, T344I, A361G, T366S, T371N, -372A, -379N, -381E, D384A, R391K, M398V, Q412A, V414L, G430N, G431E, N432G, N435R, -436T; gp41: L9I, T94P, E110D, D113E, N163D, K166N, K195R, G225E, D232G, R259Q, V290L, W314G, I321V, G322L, I325L; nef: A15D, R22K, D38A, V43I, -51T, D54A, T56A, E63D, G83A, Y120F, V133I, C163F, S169N, M182R; p17: L61M, R62M, Y79F, R91K, Q113R, V128G; p2: M14L; p24: V36I, S41T, M55T, L83I, I91L, S102G, T116A, I135V, R154K, N183S, R203K; p6: A9T, P11T; p7: K3R, I12S; pro: E35D, R41K, I72T; rev: T14Q, L78I, G99R, I109V; tat: K19T, K24N, I39T, T40K, H60P, S87*; vif: R37K, D61E, T67I, T74P, K92G, S116T, K122N, K141Q, N155K, Q178R; vpr: G41S, E58Q, Q77H; vpu: N2I, I13T, F16S, A19V, V20I, Y27F, I28L, R31K, R47G, E70G, N73D, L82V"}}}, {"name": "AF460972", "node_attrs": {"div": 0.12679, "accession": "AF460972", "clade_membership": {"value": "CRF13_cpx"}, "country": {"value": "CM"}, "date": {"value": 1996.0}, "Strain_name": {"value": "96CM_1849"}, "LANL_subtype": {"value": "CRF13_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T200G", "C316T", "A418G", "T602C", "G650A", "C655T", "G662T", "A664G", "T668C", "A676G", "G696A", "A764G", "G771T", "A839G", "G968A", "A980G", "C988A", "A991G", "C1002T", "A1046G", "G1090A", "C1091T", "A1145G", "T1182C", "A1271T", "C1316T", "A1445C", "G1449A", "A1525G", "C1615T", "A1616G", "G1619A", "C1756A", "T1782A", "T1783C", "T1790C", "A1794G", "C1826A", "C1833T", "A1876G", "T2315C", "A2329G", "G2392T", "G2548A", "A2551C", "A2590G", "T2654C", "A2715G", "G2716A", "A2722G", "A2752G", "C2822G", "A2887G", "G2902A", "T2905C", "C2975T", "G2984A", "C3075T", "A3076G", "G3229A", "A3251C", "G3264A", "A3370G", "A3643G", "A3697T", "A3781G", "A3793C", "G3808T", "G3836A", "G3859A", "T4276G", "A4397T", "T4674C", "T4912C", "A4988C", "C5034T", "A5049C", "C5062T", "C5227A", "T5254C", "T5286C", "A5293G", "A5444C", "G5535A", "A5547T", "G5558A", "G5581A", "G5589A", "T5599G", "G5626A", "C5627T", "A5659T", "T5684C", "T5778C", "C5789-", "A5790-", "G5791-", "A5792C", "A5796T", "T5797G", "T5798A", "G5799C", "G5800T", "C5801T", "A5802G", "A5803G", "A5804C", "C5806A", "T5807A", "T5808A", "-5809C", "-5810T", "-5811T", "G5864A", "C5866T", "G5954T", "A5955C", "T5971C", "G6028A", "T6030G", "T6046C", "A6059G", "C6101A", "C6175T", "A6177G", "C6178T", "-6180A", "C6181T", "-6183G", "A6186G", "C6193T", "-6195G", "-6196C", "-6198G", "-6200A", "-6201C", "-6214A", "A6219G", "T6263G", "A6266G", "A6268C", "C6305G", "G6379A", "A6461G", "A6489G", "T6590G", "G6593A", "A6605G", "C6612T", "A6614G", "A6615G", "C6618A", "C6637T", "A6639C", "A6754G", "A6776C", "G6779A", "A6814G", "C6826T", "G6831A", "A6833G", "-6969T", "-6976G", "-6977C", "-6978A", "-6996G", "-7005A", "-7008C", "T7045C", "G7094A", "A7133T", "A7149T", "T7150G", "A7151G", "A7152G", "A7161G", "T7165A", "C7171A", "G7190A", "G7198A", "C7250T", "G7270A", "A7273G", "T7309A", "A7318G", "C7365T", "G7501A", "C7690A", "A7693G", "A7706C", "A7773G", "A7791G", "G7888A", "A7891T", "A7903G", "C7936T", "C7940A", "G8017C", "C8047T", "G8105A", "T8155C", "T8167C", "T8171G", "T8209C", "A8230T", "T8265C", "T8287C", "A8308G", "A8364C", "T8371C", "A8402-", "A8403-", "G8404-", "G8405-", "A8406-", "G8407-", "A8408-", "A8409-", "C8410-", "T8411-", "C8412-", "C8413-", "T8414-", "C8415-", "C8416-", "A8458G", "A8459G", "A8468C", "A8484C", "G8486A", "G8499A", "G8503A", "G8506A", "C8509T", "A8533G", "G8554A", "T8646C", "G8666C", "G8761A", "G8784A", "G8861A", "A8869C", "A8966-", "A8967-", "G8968-", "A8969-", "G8970-", "T8972-", "T8973-", "C8975-", "A8977-", "A8981G", "G8982A", "C8985T", "A9009C", "G9027A", "G9035A", "C9047A"], "INT": ["E6D", "E11D", "A21T", "D167E", "I208L"], "RT-p51": ["K207R", "P243A", "P294S", "A297T", "A327V", "I386L", "R390K"], "RT-p66": ["K207R", "P243A", "P294S", "A297T", "A327V", "I386L", "R390K"], "gp120": ["D4N", "K69E", "L83I", "N108S", "-109D", "T110S", "-111S", "-114S", "-115S", "-116T", "-120I", "-121Q", "-122G", "-123R", "L137V", "R138G", "L151V", "K203E", "K212R", "S246A", "E247K", "N251D", "A253V", "K254G", "T255N", "K262T", "K308Q", "E309K", "K319A", "K320Q", "N327D", "H336P", "-372V", "-375Q", "-379D", "-381G", "N385T", "V414I", "T427S", "N432V", "N433G", "-436R", "N437T", "D446N", "K472R"], "gp41": ["A21V", "D129E", "T130M", "I135L", "N157S", "N163S", "R196S", "Q213K", "A268T", "I321T"], "nef": ["S8R", "I10T", "R21-", "R22-", "T23-", "P24-", "P25-", "K39R", "M48L", "-49A", "E53K", "C55Y", "T56V", "E64G", "R71K", "Y102H", "G140E", "V148I", "M173I", "E176A"], "p17": ["K28R", "A107V", "K109N", "N110S", "K114R", "D121N"], "p2": ["G9S"], "p24": ["A14S", "L83M", "P86Q", "Q87R", "I91F", "S120N", "E180D"], "p6": ["A12E", "P23-", "S24P", "P25S", "-26Q", "L35T", "T39A", "Q52*"], "p7": ["K20R", "T50M"], "pro": ["L10I", "T12I"], "rev": ["G7D", "E11V", "A15T", "S25N", "P30S", "P31Q", "E57Q", "P67S", "S86N", "S103P", "S107P", "V108G"], "tat": ["N23T", "R57S", "S61N", "V69I", "T76I"], "vif": ["Y30H", "M109T", "E134D", "N155H", "T159I"], "vpr": ["I61T", "I63M"], "vpu": ["Q5P", "A7I", "I18L", "V26A", "E62D", "E63D"]}, "labels": {"aa": "INT: E6D, E11D, A21T, D167E, I208L; RT-p51: K207R, P243A, P294S, A297T, A327V, I386L, R390K; RT-p66: K207R, P243A, P294S, A297T, A327V, I386L, R390K; gp120: D4N, K69E, L83I, N108S, -109D, T110S, -111S, -114S, -115S, -116T, -120I, -121Q, -122G, -123R, L137V, R138G, L151V, K203E, K212R, S246A, E247K, N251D, A253V, K254G, T255N, K262T, K308Q, E309K, K319A, K320Q, N327D, H336P, -372V, -375Q, -379D, -381G, N385T, V414I, T427S, N432V, N433G, -436R, N437T, D446N, K472R; gp41: A21V, D129E, T130M, I135L, N157S, N163S, R196S, Q213K, A268T, I321T; nef: S8R, I10T, R21-, R22-, T23-, P24-, P25-, K39R, M48L, -49A, E53K, C55Y, T56V, E64G, R71K, Y102H, G140E, V148I, M173I, E176A; p17: K28R, A107V, K109N, N110S, K114R, D121N; p2: G9S; p24: A14S, L83M, P86Q, Q87R, I91F, S120N, E180D; p6: A12E, P23-, S24P, P25S, -26Q, L35T, T39A, Q52*; p7: K20R, T50M; pro: L10I, T12I; rev: G7D, E11V, A15T, S25N, P30S, P31Q, E57Q, P67S, S86N, S103P, S107P, V108G; tat: N23T, R57S, S61N, V69I, T76I; vif: Y30H, M109T, E134D, N155H, T159I; vpr: I61T, I63M; vpu: Q5P, A7I, I18L, V26A, E62D, E63D"}}}]}]}]}]}]}, {"name": "NODE_0000509", "node_attrs": {"div": 0.04629, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G10T", "T12C", "T159A", "C531T", "G791A", "T1280C", "G1355A", "T1501A", "G1687A", "T1828A", "G1858A", "T1864C", "T1873C", "G1912A", "A2182G", "G2273A", "A2386C", "A2389G", "T2452C", "C2467T", "G2470A", "C2503T", "C2575T", "G2728A", "G2872A", "T3132A", "A3490G", "T3550C", "T5451C", "G5496C", "G5538A", "C5602T", "A5611C", "T5616-", "G5626T", "A5628T", "C5639G", "T5641C", "T5655C", "T5658A", "A5659G", "T5660C", "A5664C", "G5703A", "C5704A", "G5706A", "T5708G", "G5711A", "G5712A", "G5729A", "A5734C", "A5795C", "-5809G", "C5827T", "T5860C", "A5938T", "G5954A", "G5963A", "T6024C", "A6177-", "A6179-", "A6362G", "A6456G", "T6457G", "G6481A", "C6487T", "C6499T", "A6628G", "A6647G", "A6703-", "A6767G", "G6773A", "G6779A", "T6849C", "C6951-", "T6953-", "G6954-", "A6992-", "C7045A", "A7089C", "T7114C", "G7132A", "T7147-", "A7225G", "G7309T", "A7315G", "C7392T", "A7456G", "T7604A", "G7657A", "A7669G", "G7677A", "T7692A", "G7702C", "T7801C", "G7807A", "T7921C", "C8171T", "G8240A", "C8294A", "T8323A", "G8329A", "G8407A", "T8411C", "A8570G", "A8591T", "G8807A", "G8814A", "T8843C", "A9095T", "T9097C"], "INT": ["T206S"], "RT-p51": ["V60I", "F346Y"], "RT-p66": ["V60I", "F346Y"], "gp120": ["N113-", "N159-", "N201R", "I305V", "E309K", "P335S", "T366-", "W367-", "Q412A", "K474R"], "gp41": ["A30V", "S101T", "S125N", "D129Q", "I130Q", "N133S", "W286G", "E313N", "H331N"], "nef": ["R22Q", "E158K"], "p17": ["P66S"], "p24": ["L83I"], "p6": ["S3N", "D32E", "T39A"], "p7": ["Q9P", "I12N"], "pro": ["E35D"], "rev": ["S8N", "V104G", "A108V"], "tat": ["K40N", "I69V"], "vpu": ["A11G", "I18A", "L33I", "D40E", "I43L"]}, "labels": {"aa": "INT: T206S; RT-p51: V60I, F346Y; RT-p66: V60I, F346Y; gp120: N113-, N159-, N201R, I305V, E309K, P335S, T366-, W367-, Q412A, K474R; gp41: A30V, S101T, S125N, D129Q, I130Q, N133S, W286G, E313N, H331N; nef: R22Q, E158K; p17: P66S; p24: L83I; p6: S3N, D32E, T39A; p7: Q9P, I12N; pro: E35D; rev: S8N, V104G, A108V; tat: K40N, I69V; vpu: A11G, I18A, L33I, D40E, I43L"}}, "children": [{"name": "results/subtype_trees/CRF06_cpx.nwk", "node_attrs": {"div": 0.08618999999999999, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C23T", "G43A", "T49A", "A50G", "C96A", "A97C", "-217T", "A303-", "G317A", "C379A", "A386G", "T434C", "A512G", "G612A", "G614A", "G653A", "A678G", "A697C", "C713T", "C714A", "A716T", "C722T", "T734C", "G743A", "C767T", "A776G", "T782A", "G810A", "T830C", "T851C", "C892T", "C893G", "A899G", "C904T", "T917C", "A920G", "C936T", "G941A", "T947C", "G968A", "C988T", "G1064T", "C1088A", "T1118C", "G1139A", "T1214C", "A1217G", "G1247A", "C1334T", "G1339A", "A1379T", "G1562A", "T1646C", "A1712T", "T1790C", "A1839G", "A1903C", "A2057C", "T2062C", "T2071C", "C2266T", "C2281T", "C2296T", "C2335T", "C2356T", "C2386T", "G2389T", "A2395G", "C2420T", "G2539A", "C2615A", "T2632G", "G2656A", "G2686A", "C2749T", "T2770C", "A2788G", "A2818G", "G2830A", "C2845T", "A2875G", "C2930T", "T2944C", "G2950A", "C2953A", "G2980A", "G2998A", "A3031G", "A3037G", "A3043G", "A3088G", "A3091G", "A3099G", "T3118A", "A3124G", "T3131C", "T3139C", "A3151G", "A3154G", "A3162G", "G3165T", "G3166A", "G3168A", "T3207C", "A3217G", "A3224C", "A3292G", "G3316A", "T3328C", "G3340A", "T3358C", "T3368C", "A3387C", "G3439A", "C3449A", "T3450A", "T3496C", "A3520G", "T3526A", "C3542A", "G3553A", "G3631A", "G3664A", "T3668C", "A3769G", "A3838C", "G3846A", "T3898C", "A3952G", "T3970C", "T3976C", "T3977C", "T3991A", "A4063G", "T4079C", "A4111G", "T4117C", "C4129T", "G4156A", "A4243G", "C4270A", "T4276C", "C4396T", "G4582A", "G4677A", "G4696A", "T4701A", "A4721C", "A4773G", "G4782A", "G4802A", "C4803A", "T4826C", "T4832C", "G4838A", "C4857T", "G4887A", "C4889T", "A4988C", "T5006C", "A5042C", "C5050A", "A5057G", "T5062G", "A5085C", "G5086A", "G5087A", "C5095T", "G5131A", "A5143G", "G5167A", "A5187G", "G5212A", "C5215A", "G5225A", "C5237T", "T5327C", "A5336C", "T5357A", "C5412T", "A5426G", "A5433G", "A5444C", "A5446T", "A5447C", "G5448A", "A5480C", "T5484G", "C5511T", "G5546C", "A5555C", "C5556T", "A5644G", "A5656T", "C5679T", "G5692C", "A5701G", "C5769A", "-5799T", "G5800A", "-5810G", "-5811G", "G5864A", "A5896G", "T5901C", "A5906G", "A5965G", "C5989T", "A6023C", "C6052T", "T6181-", "A6182-", "C6183-", "G6277A", "G6339-", "G6346A", "C6347T", "G6368A", "A6394G", "C6397T", "G6403A", "T6409C", "C6446T", "G6466T", "C6545T", "G6547A", "T6551C", "A6553G", "C6563T", "G6577A", "G6588A", "T6598C", "G6638A", "A6654C", "T6655G", "C6670T", "A6691-", "C6692-", "G6693-", "T6694C", "A6712G", "A6718G", "A6757T", "A6781T", "C6790T", "C6792T", "T6793G", "A6799G", "G6802T", "A6805G", "G6806A", "T6815C", "G6819A", "A6825T", "C6843A", "A6844C", "C6857T", "C6862T", "T6863G", "C6925T", "C7024T", "A7027G", "A7060G", "C7087T", "T7144G", "G7146-", "A7151-", "A7152-", "T7153-", "A7154-", "T7156-", "C7170-", "C7171-", "G7244A", "G7256A", "G7269A", "G7285A", "A7290G", "A7297G", "C7324T", "G7343A", "G7366A", "G7441A", "A7583C", "G7628A", "G7633A", "A7706C", "G7720A", "C7723T", "A7782G", "T7813C", "A7885C", "A7918G", "C7921G", "C7932T", "A7941C", "G7942A", "G7944C", "A7947G", "C7949G", "A7962G", "G7965A", "G7997A", "A7998C", "C8005G", "G8019A", "C8080A", "A8093G", "C8120A", "G8130A", "G8144A", "G8145T", "T8155C", "T8164C", "T8167G", "C8168G", "T8172G", "T8182A", "A8208G", "G8212A", "C8277T", "G8280T", "A8288T", "C8293T", "G8317A", "C8320A", "G8385C", "T8414-", "A8441G", "A8453G", "A8459G", "A8465G", "-8490A", "T8495A", "T8504C", "C8514T", "G8526A", "A8527C", "G8528A", "A8531G", "G8588A", "G8590C", "C8699T", "C8751T", "T8770A", "A8777G", "A8794G", "C8810T", "A8812C", "A8859G", "T8903C", "C8934A", "C8948T", "C8966A", "G8974T", "C8978A", "A8979C", "A8980G", "T9028C", "C9078T", "C9108T", "G9128A", "T9134A", "A9135G", "C9181A"], "INT": ["S24N"], "RT-p51": ["D335G", "Y346H", "K356R", "R357I", "R358K", "V371A", "K431T"], "RT-p66": ["D335G", "Y346H", "K356R", "R357I", "R358K", "V371A", "K431T", "L452K", "H483N"], "gp120": ["D4N", "V16A", "K18E", "N57S", "N108-", "I153V", "D157-", "T170V", "E262K", "N267T", "K319A", "K323E", "H324L", "S337A", "N369-", "R391K", "N437-", "E464K", "V468I", "E479G"], "gp41": ["A14T", "T94P", "F206L", "T210I", "Q213P", "E215G", "P216A", "E220G", "G221E", "D230G", "D232T", "L273T", "R276H", "G281I", "L289V", "L290C", "C326F"], "nef": ["E15Q", "P53A", "D54A", "E62T", "G83A", "F143Y", "A156E", "N157T", "L198K"], "p17": ["A15E", "E93K", "T115A", "D121A", "Q127N"], "p24": ["V27I", "T54M", "T58I", "I83V", "R203K"], "pro": ["K14R"], "rev": ["E11Q", "T14L", "E32N", "T34S", "R50N", "H53D", "P67S", "L78I", "T91N", "G99D", "S103P", "S106P", "S107G", "V109L", "S112T"], "tat": ["D2E", "Q17R", "N23T", "K24S", "Q35P", "Q60P", "P75S", "R78Q", "N80E", "K85E", "E86K"], "vif": ["V31I", "R37K", "F39L", "E45D", "K63E", "H73N", "E78K", "G101S", "E134D", "T155K", "T159R", "R167Q", "N186S", "Q187H"], "vpr": ["N28S", "G41N", "H45Y", "Q77H"], "vpu": ["A7S", "I13V", "I17L", "E29Q", "K32E", "R41K", "-68M"]}, "labels": {"aa": "INT: S24N; RT-p51: D335G, Y346H, K356R, R357I, R358K, V371A, K431T; RT-p66: D335G, Y346H, K356R, R357I, R358K, V371A, K431T, L452K, H483N; gp120: D4N, V16A, K18E, N57S, N108-, I153V, D157-, T170V, E262K, N267T, K319A, K323E, H324L, S337A, N369-, R391K, N437-, E464K, V468I, E479G; gp41: A14T, T94P, F206L, T210I, Q213P, E215G, P216A, E220G, G221E, D230G, D232T, L273T, R276H, G281I, L289V, L290C, C326F; nef: E15Q, P53A, D54A, E62T, G83A, F143Y, A156E, N157T, L198K; p17: A15E, E93K, T115A, D121A, Q127N; p24: V27I, T54M, T58I, I83V, R203K; pro: K14R; rev: E11Q, T14L, E32N, T34S, R50N, H53D, P67S, L78I, T91N, G99D, S103P, S106P, S107G, V109L, S112T; tat: D2E, Q17R, N23T, K24S, Q35P, Q60P, P75S, R78Q, N80E, K85E, E86K; vif: V31I, R37K, F39L, E45D, K63E, H73N, E78K, G101S, E134D, T155K, T159R, R167Q, N186S, Q187H; vpr: N28S, G41N, H45Y, Q77H; vpu: A7S, I13V, I17L, E29Q, K32E, R41K, -68M", "clade": "CRF06_cpx"}}, "children": [{"name": "CRF06_cpx_NODE_0000001", "node_attrs": {"div": 0.09063999999999998, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C435T", "G480A", "A806G", "T979C", "G1781-", "C1782-", "T1783-", "A1828C", "G1829-", "T1830-", "C1831-", "G2459A", "T3256C", "G4244C", "C4471T", "C4724T", "G4764-", "G4765-", "C5358A", "G5482C", "G5484A", "A5612C", "C5614-", "C5615-", "T5626C", "C5627T", "A5864-", "A5865-", "T6169C", "T6187-", "A6282C", "G6323-", "A6324-", "T6325-", "A6326-", "A6327-", "T6328-", "A6329-", "A6330-", "T6331-", "A6332-", "T6334-", "A6335-", "G6336-", "T6337-", "A6338-", "T6340-", "A6685G", "C6694-", "A6695-", "T6696-", "C6797A", "A6947-", "G6948-", "T6949-", "A6950-", "G7145-", "A7148-", "A7149-", "T7150-", "A7155-", "A7157-", "A7158-", "T7159-", "G7160-", "A7161-", "C7313G", "T7323C", "T7392C", "A7533G", "T7912C", "G8055A", "A8348G", "A8409G", "C8410-", "C8411-", "C8412-", "C8413-", "C8415-", "C8416-", "G8516A", "T8847A"], "INT": ["E157Q"], "RT-p51": ["E122K"], "RT-p66": ["E122K"], "gp120": ["T110-", "N158-", "N160-", "N161-", "S162-", "D202E", "H280-", "I281-"], "gp41": ["L4V", "V7A", "V30A", "K77R", "I135L"], "nef": ["P24-", "P25-"], "p17": ["G49S"], "p24": ["V83T"], "p6": ["N3S", "*50S", "S51-"], "pro": ["V11-"], "tat": ["V36L"], "vpu": ["P3L", "S7-", "D60E", "T61L", "E62A", "E63L", "M68G", "E70-"]}, "labels": {"aa": "INT: E157Q; RT-p51: E122K; RT-p66: E122K; gp120: T110-, N158-, N160-, N161-, S162-, D202E, H280-, I281-; gp41: L4V, V7A, V30A, K77R, I135L; nef: P24-, P25-; p17: G49S; p24: V83T; p6: N3S, *50S, S51-; pro: V11-; tat: V36L; vpu: P3L, S7-, D60E, T61L, E62A, E63L, M68G, E70-"}}, "children": [{"name": "MF109474", "node_attrs": {"div": 0.13384999999999997, "accession": "MF109474", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "13774_1_49.3"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "G428A", "C434T", "A461C", "T479C", "A509G", "T531C", "T549A", "C558A", "A571T", "A576C", "C577T", "A618G", "A619C", "C636G", "G665A", "G671A", "A676G", "G683A", "A699C", "C710T", "G712A", "A714C", "A715-", "T716-", "G717-", "A815G", "T824G", "C827T", "C897T", "A968C", "T983C", "A1019G", "A1025G", "T1064G", "C1094T", "G1109A", "A1190C", "G1192A", "G1232A", "A1278G", "A1279G", "T1325C", "T1335C", "G1388A", "G1404A", "C1439T", "G1449-", "G1450-", "T1451-", "C1453G", "G1498A", "A1565G", "A1588G", "G1619A", "A1687G", "C1693G", "A1694C", "G1725A", "A1733G", "T1741C", "C1755T", "C1767T", "-1775A", "A1784G", "C1790T", "G1819A", "A1841G", "T1868C", "G1972A", "A1990G", "A1993G", "C2211A", "G2248A", "T2257C", "A2344G", "T2356C", "G2395A", "T2425C", "T2440C", "G2473A", "T2494A", "T2542G", "A2612G", "C2613G", "A2617G", "A2629G", "C2638T", "T2719C", "A2722C", "A2728G", "C2828A", "G2833A", "C2834G", "C2839A", "T2899C", "A2929G", "A2953G", "A3034C", "C3100A", "A3111T", "A3166G", "G3217A", "A3218G", "C3223T", "C3225A", "A3230T", "G3292A", "A3334C", "C3358T", "C3376T", "G3379A", "A3397C", "T3399C", "T3414A", "C3415T", "A3430G", "T3445C", "A3450T", "G3473A", "G3477A", "T3497A", "A3508C", "A3622G", "T3628C", "A3651G", "A3684G", "C3763A", "G3766A", "T3793C", "G3825A", "G3891A", "C4006T", "C4015T", "A4178G", "T4240C", "G4243A", "A4254C", "G4264A", "A4293G", "A4303G", "C4436A", "T4441A", "A4498C", "A4543C", "G4573A", "G4622A", "A4625G", "A4661G", "A4701C", "A4760G", "G4773A", "T4793C", "A4820T", "G4859A", "A4863G", "G4878A", "T4889C", "G4913A", "C4914T", "T4932G", "A4937T", "G4949A", "A4966G", "A4968G", "C4988A", "C5006T", "A5024G", "T5027C", "C5028T", "A5045G", "A5046G", "A5050G", "A5055C", "A5059G", "G5075A", "G5082A", "A5113G", "A5166G", "C5168G", "T5205A", "C5221T", "G5257A", "T5275A", "G5308A", "A5335C", "C5336T", "G5382T", "T5412C", "T5446A", "C5447A", "A5461G", "T5466C", "C5480A", "A5481G", "A5547G", "G5548A", "C5584T", "A5594G", "T5597G", "G5599-", "A5621T", "A5623G", "G5647A", "G5668A", "A5689C", "A5691G", "A5718G", "G5755A", "T5772C", "A5781C", "C5789A", "C5792A", "A5793T", "C5795A", "C5833T", "T5844C", "G5845A", "G5856A", "T5857G", "C5884A", "C6023A", "C6024G", "C6026A", "A6031G", "A6065C", "A6066C", "C6097T", "A6131C", "T6151C", "T6163C", "C6165G", "-6170T", "T6171C", "-6172A", "-6174A", "-6175C", "-6177A", "T6178A", "-6182A", "-6183C", "-6187G", "A6188T", "-6189C", "A6197-", "T6199-", "-6222C", "-6225A", "A6232G", "C6241T", "G6303A", "A6304G", "C6317T", "G6362T", "C6364T", "A6376G", "G6392A", "G6394A", "C6412T", "G6451A", "T6460A", "A6508G", "T6523C", "T6563A", "A6599C", "C6618A", "C6619T", "G6631A", "T6643A", "T6652C", "-6701A", "-6702T", "-6703T", "A6754G", "T6760C", "A6776G", "A6786C", "A6788G", "A6789C", "G6809A", "C6810A", "A6818G", "A6823C", "T6829G", "T6838A", "A6839G", "A6840T", "C6849G", "A6855G", "T6860C", "A6881G", "G6905A", "A6913G", "T6928C", "A6936C", "T6943-", "A6944-", "A6945-", "T6946-", "G7027A", "G7054A", "A7102T", "T7107A", "G7144T", "-7164C", "-7170T", "-7171C", "G7212A", "T7217C", "G7225A", "C7250T", "A7269G", "G7283A", "G7297A", "A7306G", "T7309C", "G7369A", "G7390A", "C7411T", "G7450A", "T7466C", "A7471G", "T7489C", "G7513T", "C7603T", "A7604C", "C7605A", "A7626T", "A7633C", "A7646C", "A7655G", "G7669A", "A7690G", "G7712C", "A7741G", "A7763C", "G7782A", "T7852C", "G7883A", "G7918A", "C7940-", "A7953G", "G7977A", "A7989C", "G7995A", "A8011C", "A8014G", "A8019G", "C8051A", "G8079T", "T8094G", "A8118G", "G8167A", "T8169C", "G8170A", "T8171G", "A8193G", "C8213T", "A8219G", "A8222T", "C8223T", "T8243G", "G8255A", "T8268C", "G8276A", "T8321C", "G8328T", "T8440C", "G8441A", "C8445A", "A8446G", "A8458C", "A8469C", "C8488T", "T8507C", "G8532-", "A8555G", "G8561A", "T8582C", "C8603T", "A8604G", "T8685C", "T8766C", "G8767C", "G8795A", "C8809A", "T8810G", "A8827C", "C8840T", "T8860C", "G8861A", "A8874G", "T8887G", "C8900T", "C8913A", "G8915A", "A8934C", "C8951G"], "INT": ["S17N", "S39N", "I135V", "K160T", "K173R", "Q221K", "N222K", "E256D", "G283S", "R284G"], "RT-p51": ["T39K", "T173G", "I178M", "Q245K", "P247A", "D248E", "Y339F", "I357M", "I375V", "T377Q", "S379C", "E413D", "V435A", "F440Y"], "RT-p66": ["T39K", "T173G", "I178M", "Q245K", "P247A", "D248E", "Y339F", "I357M", "I375V", "T377Q", "S379C", "E413D", "V435A", "F440Y", "K452I", "D460N", "R461K", "S468T", "E471D", "N519S", "K530R"], "gp120": ["S1K", "N5-", "L58M", "N71P", "K93Q", "T104-", "-114S", "-115N", "-116S", "-117N", "-118K", "-119T", "-120K", "-121S", "-122N", "-123T", "-124E", "I126M", "K143T", "P155S", "V170S", "V180I", "L237I", "R245K", "I249L", "T255N"], "gp41": ["T101H", "Y108F", "D109N", "E110D", "M115L", "I118V", "S133N", "E137Q", "K154Q", "V194I", "P213-"], "p17": ["E42D", "S66P", "S72T", "L75I", "Y79F", "T81L", "K95A", "L101V", "K114R", "T122P", "S126N", "N127L", "V128-"], "p2": ["A12-"], "p24": ["I15M", "E79D", "I96M", "R154K", "N183G", "G225S"], "p6": ["P5R", "G16R", "I21T", "P23-", "S24P", "P25S", "-26S", "P30S", "L35-", "S47N"], "p7": ["R11K", "K41R"], "pro": ["I15V", "I64M"], "rev": ["Q11R"], "tat": ["E2D", "S24K", "K29E", "P35Q", "A58T", "P70S"], "vif": ["G60-"], "vpr": ["E21G", "L22V", "F34Y", "N41S", "H77P", "A93S"], "vpu": ["L4V", "E5V", "I6L", "V14I", "V21I", "I28L", "A50T", "E58D", "A65M", "L67M", "M71-"]}, "labels": {"aa": "INT: S17N, S39N, I135V, K160T, K173R, Q221K, N222K, E256D, G283S, R284G; RT-p51: T39K, T173G, I178M, Q245K, P247A, D248E, Y339F, I357M, I375V, T377Q, S379C, E413D, V435A, F440Y; RT-p66: T39K, T173G, I178M, Q245K, P247A, D248E, Y339F, I357M, I375V, T377Q, S379C, E413D, V435A, F440Y, K452I, D460N, R461K, S468T, E471D, N519S, K530R; gp120: S1K, N5-, L58M, N71P, K93Q, T104-, -114S, -115N, -116S, -117N, -118K, -119T, -120K, -121S, -122N, -123T, -124E, I126M, K143T, P155S, V170S, V180I, L237I, R245K, I249L, T255N; gp41: T101H, Y108F, D109N, E110D, M115L, I118V, S133N, E137Q, K154Q, V194I, P213-; p17: E42D, S66P, S72T, L75I, Y79F, T81L, K95A, L101V, K114R, T122P, S126N, N127L, V128-; p2: A12-; p24: I15M, E79D, I96M, R154K, N183G, G225S; p6: P5R, G16R, I21T, P23-, S24P, P25S, -26S, P30S, L35-, S47N; p7: R11K, K41R; pro: I15V, I64M; rev: Q11R; tat: E2D, S24K, K29E, P35Q, A58T, P70S; vif: G60-; vpr: E21G, L22V, F34Y, N41S, H77P, A93S; vpu: L4V, E5V, I6L, V14I, V21I, I28L, A50T, E58D, A65M, L67M, M71-"}}}, {"name": "CRF06_cpx_NODE_0000002", "node_attrs": {"div": 0.11239999999999999, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A1101G", "C1175T", "G1184A", "T1220C", "G1256A", "A1445T", "A1496G", "G1592A", "C1610T", "C1613T", "G1664A", "T1712A", "T1741A", "T1752C", "G1766-", "C1768-", "A1770-", "A1771-", "G1772-", "G1773-", "A1774-", "A1837G", "G1901A", "T1986C", "A2007G", "A2059C", "A2154G", "G2155A", "C2263T", "A2293G", "T2389G", "G2392A", "A2461G", "C2464G", "C2485T", "T2575C", "A2641G", "C2806T", "C2822A", "G2875A", "C2909G", "G3031A", "C3100T", "C3224A", "G3236A", "C3266T", "T3310C", "T3493G", "T3544G", "T3551C", "A3676T", "G3916A", "C3922T", "T3962A", "C3995A", "G3997A", "G4145A", "C4146G", "A4246G", "C4276A", "C4667T", "T4676C", "T4703G", "C4721T", "T4727C", "A4737G", "A4774C", "A4782G", "G4892A", "C4919T", "C4943T", "C4988T", "A5131G", "G5173A", "G5187A", "C5234G", "T5339C", "G5386A", "A5431G", "G5437C", "C5641T", "G5644A", "A5667T", "T5690A", "A5693T", "A5716G", "G5741A", "A5746G", "G5747C", "A5750C", "G5775A", "T5787A", "A5788T", "C5789T", "A5790G", "A5800G", "G5893A", "T5899A", "T5917C", "C6023T", "T6091C", "A6167-", "T6184-", "A6186-", "-6194A", "-6195G", "-6196T", "-6202A", "-6204A", "-6206A", "-6208A", "A6221-", "A6223-", "G6224-", "A6251G", "G6311A", "C6363T", "A6415T", "T6446C", "A6475C", "A6577C", "C6612A", "A6638G", "G6644A", "-6691A", "G6774A", "C6777A", "T6781G", "T6802A", "A6806G", "A6819G", "A6843C", "C6849T", "A6880G", "T6916C", "A7063G", "A7093G", "A7163-", "G7276A", "A7285G", "G7307A", "T7325C", "G7456A", "A7540G", "C7583A", "C7597T", "A7628G", "G7658C", "A7676G", "A7692C", "A7701G", "T7751C", "C7906T", "A7943C", "G7957A", "C8047T", "G8070T", "G8079A", "G8093A", "G8255T", "T8256G", "T8257G", "T8268G", "A8317G", "G8349A", "G8350A", "A8425C", "C8491G", "C8503A", "G8534A", "A8549T", "C8603A", "G8666A", "C8676T", "C8747T", "A8804G", "C8831T", "A8851T", "T8887A", "A8918G"], "INT": ["L63I", "L74I", "A124S", "D167E"], "RT-p51": ["K20R", "D123E", "P243T", "P272A", "V381I"], "RT-p66": ["K20R", "D123E", "P243T", "P272A", "V381I", "N483K", "K527N"], "gp120": ["-105D", "-106I"], "gp41": ["V2I", "F8L", "P94T", "E119Q", "N125D"], "nef": ["G3N"], "p24": ["I124V"], "p6": ["E29-", "P30-", "K31-", "E32-"], "pro": ["D35N", "L63P", "K70R"], "rev": ["N32T"], "tat": ["V4I", "K19E", "A21P"], "vif": ["L39M", "I51V"], "vpr": ["S28N", "Q44E", "S94N"], "vpu": ["L4E", "E5-", "V13I", "I28R", "Q29L", "K37E", "R45K", "R47A", "E48A", "A65V"]}, "labels": {"aa": "INT: L63I, L74I, A124S, D167E; RT-p51: K20R, D123E, P243T, P272A, V381I; RT-p66: K20R, D123E, P243T, P272A, V381I, N483K, K527N; gp120: -105D, -106I; gp41: V2I, F8L, P94T, E119Q, N125D; nef: G3N; p24: I124V; p6: E29-, P30-, K31-, E32-; pro: D35N, L63P, K70R; rev: N32T; tat: V4I, K19E, A21P; vif: L39M, I51V; vpr: S28N, Q44E, S94N; vpu: L4E, E5-, V13I, I28R, Q29L, K37E, R45K, R47A, E48A, A65V"}}, "children": [{"name": "MF109383", "node_attrs": {"div": 0.14353, "accession": "MF109383", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "13592_1_3.8"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A1046T", "A1073G", "C1118T", "G1126A", "A1160G", "G1173A", "G1217A", "A1263T", "A1278G", "A1279G", "A1370G", "A1418G", "G1498A", "A1588G", "G1673A", "T1681C", "A1687G", "C1706T", "G1720T", "T1728-", "T1729-", "C1730-", "G1731-", "G1732-", "A1733G", "G1734T", "A1735C", "G1736A", "A1741G", "A1742G", "G1743A", "C1744G", "C1745A", "-1746A", "-1747A", "-1748G", "C1754T", "C1761G", "-1766A", "-1768A", "-1781G", "-1782C", "-1783T", "A1804G", "C1826T", "G1839A", "G1845A", "C1864A", "C2062T", "C2072A", "A2125G", "G2173A", "G2182A", "A2332G", "A2519G", "C2613G", "A2626G", "A2629G", "T2653C", "T2719C", "A2727G", "A2923G", "A2929G", "C2960T", "A3096T", "A3164G", "T3262C", "C3319T", "C3346T", "C3415T", "C3545A", "A3630G", "A3736G", "G3756A", "A3817G", "A3866G", "C4015A", "C4079T", "A4255T", "G4352A", "T4396C", "A4495G", "G4549A", "G4573A", "A4725C", "-4764G", "-4765G", "G4766A", "G4773A", "A4819C", "G4870A", "G4982T", "C5028T", "G5062A", "T5072C", "A5121G", "C5162T", "T5197C", "C5213T", "A5215T", "G5226A", "C5227T", "A5235T", "T5237C", "G5257A", "A5293G", "C5336T", "A5357G", "A5364G", "C5496T", "A5538G", "A5560C", "G5561A", "A5576C", "A5677G", "A5690G", "C5692T", "G5699A", "G5794T", "C5795T", "-5812A", "-5813T", "-5814T", "-5815T", "-5816T", "-5817G", "-5818A", "-5819T", "-5820G", "A5825-", "C5826-", "T5827-", "T5828-", "T5829-", "G5830-", "A5831-", "T5832-", "C5833-", "A5863G", "-5864A", "-5865A", "-5866C", "G5902T", "A5957G", "A6050G", "C6165G", "A6168-", "C6169-", "T6171-", "A6173-", "-6177A", "-6179A", "-6180C", "-6181T", "-6182C", "-6183A", "-6184A", "-6186G", "-6187A", "-6189A", "-6198C", "-6200A", "-6201C", "-6203G", "-6205C", "-6207T", "-6209A", "-6210T", "-6211G", "A6226-", "G6227-", "A6228-", "A6229-", "A6230-", "T6231-", "A6232-", "C6238T", "A6253G", "A6263T", "A6275G", "A6279G", "C6282G", "G6303A", "C6305G", "T6306A", "C6318A", "A6320G", "A6353C", "T6373A", "C6446A", "T6460G", "A6489C", "A6581G", "A6588G", "T6590A", "G6593A", "A6602T", "A6616C", "G6631T", "A6640G", "T6652C", "C6661T", "A6684G", "-6692C", "-6693C", "-6694T", "-6695T", "-6696T", "A6706G", "G6712A", "A6715T", "T6722C", "G6725A", "T6733A", "A6773G", "A6777G", "A6778T", "G6781A", "A6786G", "A6788G", "G6799A", "C6810A", "A6813G", "A6818G", "G6821C", "C6824G", "T6838A", "A6841G", "C6844G", "T6846A", "A6847C", "A6848G", "T6857C", "C7020A", "A7046C", "G7056C", "C7084T", "T7086A", "-7145G", "-7146G", "-7148G", "-7149A", "-7150T", "-7151A", "-7152C", "-7153C", "G7166-", "A7167-", "G7168-", "A7169-", "T7180C", "A7189G", "G7190A", "G7197A", "G7225A", "C7266A", "A7373C", "C7411T", "C7561T", "C7603T", "A7633T", "G7640T", "C7651T", "C7692T", "A7711G", "G7712A", "A7713C", "T7715G", "T7723C", "T7796A", "G7831A", "T7929C", "T7930C", "A7931C", "A7938C", "C7944T", "C7960A", "G7987A", "A7997G", "T8008A", "A8011C", "C8051A", "A8069C", "G8117C", "A8163G", "G8168A", "G8170A", "G8173C", "T8209C", "C8213T", "C8232T", "G8234A", "C8242T", "G8264T", "T8288A", "T8290C", "C8296T", "A8314G", "T8384C", "G8409-", "-8416C", "C8425T", "T8440C", "A8446G", "A8526G", "C8527A", "A8604G", "G8817-", "G8818-", "A8819-", "A8827G", "A8829T", "C8840T", "G8846A", "T8860C", "A8874G", "G8882A", "A8892C", "G8902C", "C8903T", "A8909G", "A8922G", "A8952-", "A8953-", "A8954-", "G8955A"], "INT": ["I31V", "K160N", "G193R"], "RT-p51": ["I142V", "T173R", "I178M", "K211R", "Q334L", "I357V"], "RT-p66": ["I142V", "T173R", "I178M", "K211R", "Q334L", "I357V", "L484I", "K512R", "S554N"], "gp120": ["T35A", "N66D", "-107M", "E125-", "I126-", "I133V", "I137L", "K141E", "K142R", "K143R", "L151D", "V153I", "P155Q", "I156V", "N167H", "L198I", "K212T", "E241D", "I243V", "S246T", "E247K", "T250S", "A253D", "K254N", "Q259H", "K262E", "V264I", "K277R", "-280P"], "gp41": ["I24L", "E110D", "D113Y", "Q130L", "E137T", "S138A", "N160S", "S165T", "M176I", "L209P", "I210L", "N212T", "R214L", "T232A", "S256L", "R259Q", "E272Q", "T273I", "N287S", "V289I", "L304F", "A310V", "V311I", "V318W", "V321L", "V322G", "A325V", "F340L"], "nef": ["T23-"], "p24": ["R132K", "V148I", "T178S", "N183G"], "p6": ["L1P", "S14I", "F17-", "G18-", "-26K", "K27E", "Q28E", "-29Q", "K42R"], "p7": ["R11K", "K41R"], "pro": ["L10F", "R14K", "G16E", "Q92K"], "rev": ["N8S", "V16I", "I21L", "Y28P", "K30N", "A37T", "A47T", "N50S", "S54T", "I55L", "A68E", "Q74P", "G90A", "G107D", "V108M"], "tat": ["S62H", "D67A", "L74P", "T77P", "Q78H", "G79W", "G83D", "P84Q"], "vif": ["N47H", "E63T", "K78A", "R95K", "R132S", "R159K", "K179E"], "vpr": ["E6G", "P37S", "E44V", "Y45H", "I63M", "I84M", "R87G"], "vpu": ["-7L", "T24A", "R31K", "L67M", "-69I", "-70L", "P76-"]}, "labels": {"aa": "INT: I31V, K160N, G193R; RT-p51: I142V, T173R, I178M, K211R, Q334L, I357V; RT-p66: I142V, T173R, I178M, K211R, Q334L, I357V, L484I, K512R, S554N; gp120: T35A, N66D, -107M, E125-, I126-, I133V, I137L, K141E, K142R, K143R, L151D, V153I, P155Q, I156V, N167H, L198I, K212T, E241D, I243V, S246T, E247K, T250S, A253D, K254N, Q259H, K262E, V264I, K277R, -280P; gp41: I24L, E110D, D113Y, Q130L, E137T, S138A, N160S, S165T, M176I, L209P, I210L, N212T, R214L, T232A, S256L, R259Q, E272Q, T273I, N287S, V289I, L304F, A310V, V311I, V318W, V321L, V322G, A325V, F340L; nef: T23-; p24: R132K, V148I, T178S, N183G; p6: L1P, S14I, F17-, G18-, -26K, K27E, Q28E, -29Q, K42R; p7: R11K, K41R; pro: L10F, R14K, G16E, Q92K; rev: N8S, V16I, I21L, Y28P, K30N, A37T, A47T, N50S, S54T, I55L, A68E, Q74P, G90A, G107D, V108M; tat: S62H, D67A, L74P, T77P, Q78H, G79W, G83D, P84Q; vif: N47H, E63T, K78A, R95K, R132S, R159K, K179E; vpr: E6G, P37S, E44V, Y45H, I63M, I84M, R87G; vpu: -7L, T24A, R31K, L67M, -69I, -70L, P76-"}}}, {"name": "MF109651", "node_attrs": {"div": 0.14040999999999998, "accession": "MF109651", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "15171_1_20.3"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G378C", "G386A", "A388G", "A389G", "A412G", "A530G", "A554G", "T570C", "C603A", "A612G", "A614T", "G677A", "A689G", "A706G", "C707T", "T716C", "T718C", "A730T", "G770A", "C773T", "A774G", "T788C", "A836G", "A869G", "A881G", "G911A", "A914G", "T936C", "A1002G", "A1133T", "G1199A", "C1211T", "T1379C", "C1406T", "A1437T", "A1457-", "G1458-", "C1459-", "A1476G", "C1492A", "G1493A", "G1495A", "A1501G", "C1514T", "A1532G", "C1536T", "A1601G", "C1688A", "-1746C", "-1747C", "-1748C", "C1749T", "C1754G", "C1756A", "A1762-", "G1763-", "G1764-", "A1765-", "C1767-", "G1769-", "A1776-", "A1777-", "G1778-", "G1779-", "A1780-", "A1784-", "G1968A", "A2242G", "T2315C", "T2503C", "A2512G", "G2518A", "G2567T", "A2710G", "G2714C", "A2950G", "G3004A", "G3037A", "T3049C", "A3080C", "C3095G", "A3096G", "A3097T", "A3163G", "T3165G", "T3170G", "C3223T", "C3359T", "G3398A", "T3412G", "G3438A", "T3497A", "A3526G", "C3567T", "C3649T", "G3808T", "G3816A", "A3991C", "A4076C", "A4093G", "G4263A", "A4273G", "A4315C", "A4433G", "A4543T", "C4674T", "T4678G", "A4697T", "C4774T", "A4820G", "G4888A", "C4890T", "C4898T", "A4950G", "A4951G", "A4993C", "T5043C", "A5046G", "T5073C", "A5159G", "G5236A", "T5275A", "C5384T", "T5446C", "A5462G", "A5567G", "T5597-", "T5604G", "C5626G", "T5627G", "G5647A", "T5695C", "A5721G", "T5739G", "A5806T", "T5844C", "T5852G", "C5860T", "G5896A", "G5902A", "C6024T", "C6067G", "-6167G", "-6170A", "-6172C", "-6174A", "A6176-", "T6178-", "A6185-", "A6188-", "-6198G", "-6200C", "-6201A", "-6203T", "-6205G", "-6207G", "A6261C", "T6307A", "G6345C", "T6355C", "G6362A", "C6364T", "A6376G", "T6395A", "A6465G", "T6562C", "C6607T", "A6612G", "A6616G", "C6618A", "C6629A", "C6632T", "T6641A", "A6653G", "C6654T", "C6660T", "-6699A", "-6700C", "-6701C", "-6702T", "-6703T", "C6717T", "C6729A", "A6730T", "G6731A", "G6743A", "C6758T", "A6765C", "A6776C", "T6792C", "G6793A", "A6797G", "A6822G", "-6833A", "-6834A", "-6835A", "A6839C", "T6856A", "T6857G", "T6860C", "C6861A", "C6875A", "A6881C", "G6894C", "A6936G", "A6937T", "A7013C", "C7014A", "C7019T", "G7026A", "G7058A", "G7060A", "C7089A", "T7107A", "C7127A", "A7129G", "-7170C", "-7171T", "T7192C", "A7471G", "C7561A", "T7609C", "T7625C", "A7626T", "T7630A", "A7641G", "C7691A", "A7705G", "G7782A", "A7807G", "G7873A", "C7941A", "A7942G", "C7944G", "G7946-", "G7947A", "G7977A", "A8073G", "A8076G", "C8103T", "A8118G", "T8121C", "G8143A", "G8168T", "T8171G", "T8210A", "A8269G", "T8277C", "A8294C", "A8323G", "G8330A", "C8331T", "A8407G", "T8492C", "C8504T", "G8531T", "A8534C", "A8573G", "A8666C", "T8699C", "G8732A", "A8792C", "C8812A", "A8814G", "G8852T", "G8859A", "G8868A", "A8869C", "T8904G", "A8922C", "T8947A", "C8951G"], "INT": ["E11D", "R14K", "I101L", "G163E", "I220V", "E256D"], "RT-p51": ["A158S", "E207Q", "I329L", "Q334G", "I357R", "S359A", "V435I"], "RT-p66": ["A158S", "E207Q", "I329L", "Q334G", "I357R", "S359A", "V435I", "R448K", "S468T", "S491L"], "gp120": ["N5-", "S57F", "N71K", "-107N", "-108N", "-114S", "-115S", "-116Q", "-117*", "-118R", "A288V", "T292N", "G293S", "D297N", "H302Y", "N304T", "R307K", "T308Q", "Q315E", "E323G", "-326K", "N328Q", "K329-", "N334K", "S335A", "S336H", "L341I", "I343L", "S347T", "E361G", "S365-", "T387Q", "P389S", "V402I", "A412E", "L425M", "G431-", "N432-", "N434-", "N435-"], "gp41": ["Y108L", "D109E", "D113G", "Q130T", "P213Q", "G215-"], "nef": ["Q22R"], "p17": ["E15Q", "K18R", "K26R", "Y79H", "Q90K", "K93D", "N124S", "V128A", "Y132F"], "p2": ["S5C", "A12-"], "p24": ["I15V", "I91V"], "p6": ["S3K", "I21K", "-26Q", "K33-", "E34-", "L35-"], "p7": ["S4G", "P9Q", "R10K", "N12S"], "pro": ["R57K"], "rev": ["I18V", "T32A"], "tat": ["P3L", "S24P", "K29R", "N64S", "Q78S"], "vif": ["H30Y", "I31S", "K37N", "G60-"], "vpr": ["T19A", "N41S"], "vpu": ["-7G", "V14I", "R28K", "Y30H", "D44E", "L63A", "M71-"]}, "labels": {"aa": "INT: E11D, R14K, I101L, G163E, I220V, E256D; RT-p51: A158S, E207Q, I329L, Q334G, I357R, S359A, V435I; RT-p66: A158S, E207Q, I329L, Q334G, I357R, S359A, V435I, R448K, S468T, S491L; gp120: N5-, S57F, N71K, -107N, -108N, -114S, -115S, -116Q, -117*, -118R, A288V, T292N, G293S, D297N, H302Y, N304T, R307K, T308Q, Q315E, E323G, -326K, N328Q, K329-, N334K, S335A, S336H, L341I, I343L, S347T, E361G, S365-, T387Q, P389S, V402I, A412E, L425M, G431-, N432-, N434-, N435-; gp41: Y108L, D109E, D113G, Q130T, P213Q, G215-; nef: Q22R; p17: E15Q, K18R, K26R, Y79H, Q90K, K93D, N124S, V128A, Y132F; p2: S5C, A12-; p24: I15V, I91V; p6: S3K, I21K, -26Q, K33-, E34-, L35-; p7: S4G, P9Q, R10K, N12S; pro: R57K; rev: I18V, T32A; tat: P3L, S24P, K29R, N64S, Q78S; vif: H30Y, I31S, K37N, G60-; vpr: T19A, N41S; vpu: -7G, V14I, R28K, Y30H, D44E, L63A, M71-"}}}]}]}, {"name": "CRF06_cpx_NODE_0000003", "node_attrs": {"div": 0.08758999999999999, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G717C", "A978G", "G2224A", "A2398G", "C3225T", "A3982G", "G4766A", "G4767T", "A4768G", "G4818A", "G5226A", "A5613G", "-5616A", "C5922T", "-6200A", "-6215A", "-6217G", "-6333G", "-6339C", "T6688-", "-6697T", "-7164C", "-7165T", "T7622A", "C7775T", "T8121C", "G8173T", "C8756T"], "RT-p51": ["T377L"], "RT-p66": ["T377L"], "gp120": ["T23I", "S57P", "K150R", "T313M", "K316N", "A318T", "R322K", "I332T"], "gp41": ["S107T", "N160S", "R214T", "N251S", "I264V", "I329F"], "p17": ["V128L"], "rev": ["H82R"], "tat": ["G79R"], "vif": ["D61C", "V66I"], "vpu": ["E66T"]}, "labels": {"aa": "RT-p51: T377L; RT-p66: T377L; gp120: T23I, S57P, K150R, T313M, K316N, A318T, R322K, I332T; gp41: S107T, N160S, R214T, N251S, I264V, I329F; p17: V128L; rev: H82R; tat: G79R; vif: D61C, V66I; vpu: E66T"}}, "children": [{"name": "CRF06_cpx_NODE_0000004", "node_attrs": {"div": 0.09019999999999999, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-166A", "G1313A", "C1403T", "-1775G", "A5282C", "G5359C", "A5538G", "A5622G", "G5794A", "-6170G", "-6177A", "-6181T", "-6182A", "A6192C", "-6201A", "-6209A", "-6213T", "-6218G", "-6219A", "T6306C", "G6611A", "C6618A", "C6824G", "-6834A", "G6935A", 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Q136E, T151K, I154V, P156T, K158R, R181K, G182D, T188I, N190D; vpr: Y15H, E17G, H40L, N41D, Y45H, P85L; vpu: V13I, Q29L, Y30H, E32Q, R34K, A50E, E56D, -72G, -73N"}}}, {"name": "CRF06_cpx_NODE_0000005", "node_attrs": {"div": 0.09387, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A399C", "C426A", "G534A", "A619C", "C1280T", "G1495A", "G1760A", "T3652C", "G3756A", "-6175C", "-6206A", "-6208T", "-6212A", "A6324G", "A6329G", "G6336A", "C6363T", "T6787A", "A6788G", "C6807A", "-6835T", "-7006C", "-7009T", "C7164G", "-7170C", "A7722C", "G7782C", "C7951A", "G8350A", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "A8407G", "C8979T"], "RT-p66": ["S554N"], "gp120": ["-108N", "-113N", "-115S", "E125-", "K141T", "-157G", "S162N", "N312D", "T318K", "E361N", "-384D", "-437S"], "gp41": ["N140T"], "nef": ["G3N", "I10-", "V11-", "Q22R"], "p17": ["K95T"], "p24": ["I15M"], "p7": ["R10K"], "tat": ["P81Q"], "vpu": ["E62D"]}, "labels": {"aa": "RT-p66: S554N; gp120: -108N, -113N, -115S, E125-, K141T, -157G, S162N, N312D, T318K, E361N, -384D, -437S; gp41: N140T; nef: G3N, I10-, V11-, Q22R; p17: K95T; p24: I15M; p7: R10K; tat: P81Q; vpu: E62D"}}, "children": [{"name": "AF064699", "node_attrs": {"div": 0.12657, "accession": "AF064699", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "AU"}, "date": {"value": 1996.0}, "Strain_name": {"value": "BFP90"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C97T", "A302T", "C362T", "G386A", "G424A", "T467C", "C471A", "A521G", "A571T", "T635C", "C636A", "T662G", "G683T", "G690-", "C691-", "A692-", "A783C", "A803G", "A818T", "T852A", "T890C", "G998A", "C1175T", "A1176G", "G1192A", "G1199A", "T1245C", "A1339G", "T1379A", "A1412G", "G1450T", "C1453G", "A1457-", "G1458-", "C1459-", "A1501G", "T1511C", "C1610T", "C1613T", "T1712C", "G1713A", "C1714T", "G1727T", "C1767T", "T1796C", "G1968A", "A1993G", "G2042A", "T2129C", "A2140G", 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"-6959A", "-6960A", "-6961C", "-6962A", "-6963C", "-6964C", "-6965T", "-6966C", "-6967A", "-6968A", "-6969G", "-6970G", "-6971G", "-6972G", "-6973T", "-6974A", "-6975A", "-6976T", "-6977G", "-6978A", "-6979C", "-6986A", "A6987C", "T6988C", "-6990A", "-6992A", "G7026A", "A7106G", "C7124A", "C7127A", "G7145A", "-7147T", "-7154G", "-7156G", "A7161T", "G7168A", "T7217C", "A7219G", "A7268T", "A7269G", "G7297A", "G7322A", "T7324G", "G7508A", "C7582T", "C7596T", "A7628G", "A7641G", "A7700T", "A7701C", "G7712C", "A7713T", "G7773A", "T7775C", "A7781T", "T7796A", "C7805T", "C7874A", "A8023G", "C8071T", "T8094G", "C8121T", "A8130G", "G8143A", "C8155T", "G8168A", "G8170A", "A8192C", "C8213T", "A8219G", "A8222G", "A8258G", "T8259C", "G8276A", "G8349A", "G8354A", "A8364-", "G8365-", "T8366-", "C8382T", "A8399G", "T8514G", "G8534A", "T8568G", "A8663G", "C8688A", "T8740C", "A8746T", "G8777A", "A8793G", "G8808C", "C8809T", "A8829T", "G8846A", "T8860C", "G8861A", "T8887A", "C8913A", "C8928A", "T8935A", "G8936A", "A8967G"], "INT": ["E11D", "M50I", "D167E", "T218I"], "RT-p51": ["T39K", "I60V", "V118I", "D123K", "I135T", "T165I", "T173I", "F214L", "D250E", "K277R", "I329V", "Q334Y"], "RT-p66": ["T39K", "I60V", "V118I", "D123K", "I135T", "T165I", "T173I", "F214L", "D250E", "K277R", "I329V", "Q334Y", "K452Q", "S468T", "S491P", "V531I"], "gp120": ["N4K", "L6M", "T35P", "E36D", "P57S", "E59K", "E74D", "N102T", "-105N", "-106L", "-107G", "-109K", "-111L", "-112G", "-114N", "-116S", "-117T", "-118I", "-119V", "-120D", "-121D", "-122I", "L151P", "V153I", "N158D", "K159D", "N160S", "N204D", "E240G", "E241N", "I243T", "R245K", "S246T", "A253T", "K262Q", "S263P", "T267R", "N272G", "H280S", "Y290I", "T308A", "K309N", "N311T", "M313I", "Q315G", "N316E", "A319V", "K322E", "K329T", "T330H", "N334K", "S365T", "-383S", "K418V", "L424I", "L425I", "G431N", "D433E", "N435V", "K472W"], "gp41": ["V7M", "V69I", "P98L", "D113G", "E137L", "S157N", "S165T", "L191I", "V264G", "T273I", "H276R", "V289I", "K297Q", "L304F", "T306A", "T307A", "I319A", "A325I"], "nef": ["S8-", "S9-", "P14S", "A50T", "L58V", "L76V", "H116N", "I133T", "Y135F", "K151E", "E156L", "M173A", "M182K"], "p17": ["R30K", "L31M", "L46I", "A67T", "Y79F", "L101I", "N109K", "Q116H", "A121-"], "p2": ["G9V", "A10G", "A12-"], "p24": ["E29D", "S41T", "S149G", "R154K", "K203R"], "p6": ["A12I", "P30S"], "p7": ["N12S"], "pro": ["R57K", "V82I"], "rev": ["E10D", "Q11R", "I59V", "D99N", "P103S", "G107D", "V108M", "K115T"], "tat": ["N7K", "S24K", "T57Q", "P70S"], "vif": ["K37R", "L39N", "C61S", "K92R", "L102M", "M109I", "I124L", "I128R", "K157E"], "vpr": ["L42I", "N48S", "I61L", "I63T", "Q66L", "I70V"], "vpu": ["P3A", "S7A", "-72G", "-73D"]}, "labels": {"aa": "INT: E11D, M50I, D167E, T218I; RT-p51: T39K, I60V, V118I, D123K, I135T, T165I, T173I, F214L, D250E, K277R, I329V, Q334Y; RT-p66: T39K, I60V, V118I, D123K, I135T, T165I, T173I, F214L, D250E, K277R, I329V, Q334Y, K452Q, S468T, S491P, V531I; gp120: N4K, L6M, T35P, E36D, P57S, E59K, E74D, N102T, -105N, -106L, -107G, -109K, -111L, -112G, -114N, -116S, -117T, -118I, -119V, -120D, -121D, -122I, L151P, V153I, N158D, K159D, N160S, N204D, E240G, E241N, I243T, R245K, S246T, A253T, K262Q, S263P, T267R, N272G, H280S, Y290I, T308A, K309N, N311T, M313I, Q315G, N316E, A319V, K322E, K329T, T330H, N334K, S365T, -383S, K418V, L424I, L425I, G431N, D433E, N435V, K472W; gp41: V7M, V69I, P98L, D113G, E137L, S157N, S165T, L191I, V264G, T273I, H276R, V289I, K297Q, L304F, T306A, T307A, I319A, A325I; nef: S8-, S9-, P14S, A50T, L58V, L76V, H116N, I133T, Y135F, K151E, E156L, M173A, M182K; p17: R30K, L31M, L46I, A67T, Y79F, L101I, N109K, Q116H, A121-; p2: G9V, A10G, A12-; p24: E29D, S41T, S149G, R154K, K203R; p6: A12I, P30S; p7: N12S; pro: R57K, V82I; rev: E10D, Q11R, I59V, D99N, P103S, G107D, V108M, K115T; tat: N7K, S24K, T57Q, P70S; vif: K37R, L39N, C61S, K92R, L102M, M109I, I124L, I128R, K157E; vpr: L42I, N48S, I61L, I63T, Q66L, I70V; vpu: P3A, S7A, -72G, -73D"}}}, {"name": "CRF06_cpx_NODE_0000006", "node_attrs": {"div": 0.09935999999999999, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T23C", "A161G", "C207T", "A509G", "C535G", "C717G", "A1019G", "G1217A", "T2383C", "A2629G", "G3494A", "C3823T", "G3886A", "A3989G", "A4112G", "T4396C", "A4543C", "A4818G", "C4988A", "A5293G", "C5480A", "T5656A", "G5668A", "A5781G", "C5920A", "-6174C", "-6196T", "-6198C", "-6203G", "-6205A", "-6210A", "-6211A", "A6221G", "A6232G", "G6303A", "C6318A", "G6333A", "A6588G", "A6689-", "T6690-", "C6694T", "T6697A", "-6698C", "-6699A", "-6700C", "-6702T", "-6703T", "T6781A", "G6824A", "T6860C", "T6883C", "G6905A", "-6997A", "-7000A", "-7001A", "-7002A", "-7003T", "-7005A", "-7151G", "-7156C", "G7276A", "A7471G", "A7692T", "G7765A", "A7826G", "A7965G", "C8051A", "C8406A", "C8412G", "C8413A", "C8415A", "C8416G", "T8756C", "G8864T", "T9051A", "T9108C"], "INT": ["I72V", "I113V", "E256D"], "RT-p51": ["I178M"], "RT-p66": ["I178M", "V467I"], "gp120": ["-112T", "-114S", "I126-", "K127-", "R150K", "P155Q", "S336P", "G351R"], "gp41": ["Q130L", "I175V", "E221G"], "nef": ["P24E", "P25R", "E156A", "E174D"], "p17": ["A67S", "L128V"], "p24": ["I96M"], "rev": ["A68E"], "tat": ["P35Q", "K86E"], "vif": ["K78E", "D134E", "G182D"], "vpr": ["I63M"], "vpu": ["L17I", "V21I"]}, "labels": {"aa": "INT: I72V, I113V, E256D; RT-p51: I178M; RT-p66: I178M, V467I; gp120: -112T, -114S, I126-, K127-, R150K, P155Q, S336P, G351R; gp41: Q130L, I175V, E221G; nef: P24E, P25R, E156A, E174D; p17: A67S, L128V; p24: I96M; rev: A68E; tat: P35Q, K86E; vif: K78E, D134E, G182D; vpr: I63M; vpu: L17I, V21I"}}, "children": [{"name": "AB286851", "node_attrs": {"div": 0.14354, "accession": "AB286851", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "GH"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03GH173_06"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C12T", "A43G", "G52A", "C160A", "T200C", "T201C", "-303T", "C435T", "A461C", "G495A", "A503G", "T506C", "A518G", "T531C", "C558A", "A563G", "A569G", "A653G", "A656G", "G686A", "A706G", "C734T", "A764G", "G771C", "T808C", "A820G", "C830T", "C851T", "T852A", "G870T", "C871G", "G899A", "A968T", "C974T", "G978A", "T979C", "T1055C", "C1060A", "T1064A", "A1070G", "A1079G", "A1089G", "C1103T", "A1123G", "C1169T", "G1184A", "G1192A", "A1208G", "A1230C", "A1242G", "C1243T", "T1262C", "A1313T", "A1339G", "C1342G", "T1379A", "T1403C", "G1404A", "G1442A", "C1460A", "G1592A", "A1616C", "A1642G", "A1657G", "T1712A", "G1720T", "C1724T", "A1733-", "G1734-", "A1735-", "G1736A", "A1740G", "T1741G", "A1742G", "G1743A", "C1745A", "-1746G", "-1747C", "-1748C", "A1759G", "A1771G", "G1772A", "G1773C", "A1776G", "G1848A", "C1864T", "C1903T", "A1990G", "A2007G", "T2011A", "A2059G", "T2101A", "A2203G", "A2224G", "T2281C", "T2299C", "G2395A", "G2422A", "G2428A", "A2641G", "A2677G", "T2689C", "A2722C", "A2728G", "A2830G", "G2837A", "G2842A", "T2845G", "T2873C", "A2920G", "C2944T", "A2950G", "G3031A", "T3045C", "A3064G", "A3115G", "C3129A", "A3130G", "C3140T", "T3165C", "G3173A", "A3192G", "G3250A", "A3280G", "C3500T", "A3508C", "A3553G", "T3566C", "A3578G", "A3622G", "A3630C", "T3644G", "G4063A", "C4123T", "C4162A", "C4501T", "T4537C", "A4561G", "T4579C", "A4582G", "A4644G", "T4679A", "A4684G", "A4695G", "A4696G", "A4701C", "C4724T", "A4725T", "A4781G", "T4857A", "A4861G", "A4865G", "G4878A", "A4887G", "G4888T", "A4911G", "C5006T", "A5046C", "A5048G", "T5073C", "G5141C", "A5154C", "A5159G", "T5171A", "G5176A", "T5224C", "A5225G", "A5226G", "T5237C", "A5285C", "C5333T", "C5334A", "C5336A", "A5357G", "A5376G", "G5415A", "G5427A", "G5433A", "C5444A", "A5453T", "T5457C", "A5481G", "G5482A", "G5499A", "A5544C", "A5567G", "T5568C", "G5575A", "A5576C", "C5585A", "A5586G", "A5587C", "C5614G", "C5641T", "A5685G", "T5687A", "A5717G", "C5734T", "T5735A", "T5739G", "G5747T", "G5753A", "T5787A", "A5788T", "C5789T", "A5790G", "A5794G", "A5806T", "-5824A", "A5865G", "-5866C", "T5923C", "T5929C", "C5958A", "C5979T", "A5995G", "G6035A", "C6115T", "C6134A", "A6136G", "A6159C", "C6165A", "T6169C", "T6171C", "-6172A", "-6179G", "-6180T", "-6183C", "T6184C", "-6189C", "C6190T", "C6192A", "T6193C", "-6194A", "-6195G", "-6202C", "-6204T", "-6207C", "-6214A", "-6216A", "G6217A", "-6220G", "-6222T", "-6225A", "A6229C", "A6234G", "C6241T", "A6251G", "T6252A", "A6276C", "A6281C", "A6283G", "C6305A", "T6322G", "T6328G", "T6334G", "A6336C", "G6345A", "A6375G", "T6395A", "C6409T", "A6535G", "C6559T", "G6572A", "C6598T", "A6599C", "A6639G", "A6640C", "T6641A", "G6647C", "G6655A", "T6658C", "C6660A", "C6661T", "A6684G", "A6686-", "G6687-", "-6692G", "-6693G", "-6701C", "C6717T", "A6723T", "G6767A", "A6773G", "C6777T", "A6785G", "A6786G", "T6790A", "A6791G", "T6794G", "A6798G", "G6799C", "G6805A", "A6807G", "A6823G", "T6828-", "T6829-", "A6843G", "A6855G", "T6857C", "G6863A", "C6864T", "G6940A", "-6951C", "-6953T", "-6954T", "-6955T", "-6956T", "-6957C", "-6958T", "-6959A", "-6960A", "-6961T", "-6962A", "-6963A", "-6964T", "-6965A", "-6966A", "-6967T", "-6968T", "-6969C", "-6970C", "-6971A", "-6972C", "-6973A", "-6974A", "-6975A", "-6976T", "-6977A", "-6978A", "-6979T", "-6980G", "-6990C", "-6992T", "-6994T", "-6995T", "-6996T", "-6998G", "-6999A", "-7004A", "C7006T", "T7009C", "G7026A", "A7066G", "C7089A", "C7127A", "G7145C", "-7147C", "-7152G", "-7153G", "-7154C", "G7160C", "C7162G", "G7181A", "G7182C", "A7239G", "G7291C", "A7343G", "A7345G", "A7420G", "G7450A", "G7517C", "C7597T", "A7629G", "T7642C", "A7655C", "A7660T", "A7677G", "C7688G", "A7690C", "A7701G", "C7747T", "C7770A", "A7781T", "T7789C", "G7790A", "A7832G", "G7857A", "G7868T", "A7938G", "C7944G", "G7992A", "A8019G", "G8061T", "T8067C", "A8073G", "G8093A", "A8130G", "G8143A", "A8144C", "A8152G", "A8188G", "C8189A", "A8212G", "C8223T", "C8238G", "T8268G", "T8277C", "T8279G", "T8288G", "T8290G", "G8297A", "A8338G", "A8350C", "A8364T", "-8367A", "-8368G", "-8369C", "-8370C", "-8371T", "-8372G", "-8373G", "-8374G", "-8375G", "C8382A", "A8426G", "A8458G", "G8459A", "A8490G", "A8493T", "G8499A", "C8500G", "C8503A", "C8510A", "T8514G", "G8516A", "G8534A", "C8590G", "T8646C", "C8684T", "C8688A", "T8701A", "A8750C", "A8814G", "A8829T", "C8843T", "A8844C", "T8847A", "G8848A", "T8860C", "G8861A", "G8871C", "A8873T", "A8874G", "A8909T", "A8918G", "A8930T", "T8935A", "G8936A", "A8966-", "A8967C", "G8968A", "A8970G", "G8971A", "T8972C", "T8974G", "A8978G", "T8979A", "G8980A", "C9017A", "G9027T", "T9029C", "G9030A", "C9097T", "A9128G", "G9137A"], "RT-p51": ["D248N", "D250E", "V317A", "P345Q", "I357T", "A360T", "K366R"], "RT-p66": ["D248N", "D250E", "V317A", "P345Q", "I357T", "A360T", "K366R", "E471D", "S491P", "I495V", "K512T", "L517V"], "gp120": ["N4S", "T35N", "A42V", "V61I", "L94M", "N102T", "T104N", "-109A", "-111N", "-116T", "-117N", "-118R", "I133E", "K143Q", "L151T", "I156M", "N160T", "N161T", "N162-", "R164K", "K174R", "S181T", "E240K", "I249L", "A253T", "K262S", "S263T", "E265Q", "T269N", "K277R", "S278G", "F281L", "A288V", "Y290F", "V305I", "R307G", "T308I", "N311G", "D312E", "M313V", "L314V", "Q315R", "K318S", "V324I", "F325Y", "N327-", "T330S", "N334S", "S335P", "A337I", "N361K", "-366T", "-367F", "-377S", "-378N", "-379N", "-380N", "-381E", "-382N", "-383N", "D384G", "A412E", "K418I", "L425I", "G431H", "D433G", "N434H", "-436Q", "G443T", "K462R"], "gp41": ["T14A", "V72L", "D109S", "I118L", "E119D", "N125S", "Q129D", "A156E", "D163N", "I177V", "R185K", "A189S", "N212S", "T214R", "G230D", "N239S", "C253F", "F255S", "Y257C", "V264I", "H276R", "I281L", "L296I", "T307I", "A312G", "V322G", "F326V", "F329V", "V332I"], "nef": ["N3A", "S8C", "-10L", "-11G", "P14T", "K39R", "T51S", "A53S", "A54D", "L58V", "A83G", "Y102H", "H116N", "F120Y", "K158E", "I168L", "C169N", "M173A", "E177H", "R178G"], "p1": ["K4R", "N9S"], "p17": ["L31M", "E42D", "A54T", "I61M", "S66P", "L75I", "I107M", "N124S"], "p24": ["A14P", "V26A", "K30R", "S41T", "A47C", "E79D", "V83T", "T110N", "S120G", "K131R", "R154K", "T171V", "K203R", "A204G", "G225S"], "p6": ["S14I", "E19-", "I21G", "A22T", "P23A", "S24P", "P25S", "-26P", "K27R", "K31R", "E32Q", "K33E"], "pro": ["G17E", "I64M", "K70R"], "rev": ["E10A", "I18A", "I21L", "Q24S", "N32K", "R82H", "D99T", "I102V", "T114D"], "tat": ["T23N", "Y26F", "V36M", "N64S", "D67T", "P70Q", "K71Q", "T77A", "R79G"], "vif": ["T20A", "K33R", "K37G", "N47Y", "L91M", "K92R", "V98I", "S101V", "M109V", "I154L", "E185D", "N190H"], "vpr": ["E13Q", "E17A", "T19A", "L23M", "N41G", "Y45H", "I61L", "H77K", "I84M", "N91D"], "vpu": ["P3A", "F27Y", "K37R", "L43Y", "D44E", "R47I", "R49K", "D60E", "T61L", "D62A", "E63A", "A65M", "T66E", "M68G", "-69N", "E70F", "M71D", "F74-", "D75-"]}, "labels": {"aa": "RT-p51: D248N, D250E, V317A, P345Q, I357T, A360T, K366R; RT-p66: D248N, D250E, V317A, P345Q, I357T, A360T, K366R, E471D, S491P, I495V, K512T, L517V; gp120: N4S, T35N, A42V, V61I, L94M, N102T, T104N, -109A, -111N, -116T, -117N, -118R, I133E, K143Q, L151T, I156M, N160T, N161T, N162-, R164K, K174R, S181T, E240K, I249L, A253T, K262S, S263T, E265Q, T269N, K277R, S278G, F281L, A288V, Y290F, V305I, R307G, T308I, N311G, D312E, M313V, L314V, Q315R, K318S, V324I, F325Y, N327-, T330S, N334S, S335P, A337I, N361K, -366T, -367F, -377S, -378N, -379N, -380N, -381E, -382N, -383N, D384G, A412E, K418I, L425I, G431H, D433G, N434H, -436Q, G443T, K462R; gp41: T14A, V72L, D109S, I118L, E119D, N125S, Q129D, A156E, D163N, I177V, R185K, A189S, N212S, T214R, G230D, N239S, C253F, F255S, Y257C, V264I, H276R, I281L, L296I, T307I, A312G, V322G, F326V, F329V, V332I; nef: N3A, S8C, -10L, -11G, P14T, K39R, T51S, A53S, A54D, L58V, A83G, Y102H, H116N, F120Y, K158E, I168L, C169N, M173A, E177H, R178G; p1: K4R, N9S; p17: L31M, E42D, A54T, I61M, S66P, L75I, I107M, N124S; p24: A14P, V26A, K30R, S41T, A47C, E79D, V83T, T110N, S120G, K131R, R154K, T171V, K203R, A204G, G225S; p6: S14I, E19-, I21G, A22T, P23A, S24P, P25S, -26P, K27R, K31R, E32Q, K33E; pro: G17E, I64M, K70R; rev: E10A, I18A, I21L, Q24S, N32K, R82H, D99T, I102V, T114D; tat: T23N, Y26F, V36M, N64S, D67T, P70Q, K71Q, T77A, R79G; vif: T20A, K33R, K37G, N47Y, L91M, K92R, V98I, S101V, M109V, I154L, E185D, N190H; vpr: E13Q, E17A, T19A, L23M, N41G, Y45H, I61L, H77K, I84M, N91D; vpu: P3A, F27Y, K37R, L43Y, D44E, R47I, R49K, D60E, T61L, D62A, E63A, A65M, T66E, M68G, -69N, E70F, M71D, F74-, D75-"}}}, {"name": "KU168269", "node_attrs": {"div": 0.14337999999999998, "accession": "KU168269", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "BF"}, "Strain_name": {"value": "LA14AAS287"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T30C", "G121T", "A265G", "A302T", "-303A", "-304T", "A317G", "A380G", "A398G", "A426T", "G428A", "G455A", "C510A", "A511G", "A521G", "A557G", "A618G", "G678A", "G771T", "A785G", "A815G", "C827T", "T861G", "A891G", "C917T", "G977A", "A1101G", "A1115G", "A1190C", "C1261G", "C1292T", "A1307G", "A1412G", "A1424G", "C1444T", "G1452T", "A1454-", "G1455-", "C1456-", "A1457T", "G1458A", "A1461G", "A1463G", "A1476G", "A1486G", "A1499G", "G1526A", "T1547C", "T1559C", "A1562G", "G1589T", "A1601G", "C1692A", "C1706A", "G1725A", "G1727C", "G1819A", "A1841G", "T1854A", "C1903A", "G1972A", "G2042A", "A2056G", "C2071T", "T2077C", "G2182A", "G2462A", "A2539G", "A2579T", "C2613A", "A2617G", "C2644T", "A2722G", "T2758C", "G2761A", "C2770T", "T2779G", "G2818A", "C2822G", "G2926A", "A2956G", "A2989G", "T3002C", "G3093A", "A3168G", "C3175T", "G3221T", "C3224A", "A3226G", "C3252T", "A3265G", "G3292C", "G3398A", "A3400G", "T3412C", "G3431T", "A3502G", "T3544C", "C3545T", "C3550A", "C3620A", "C3649T", "A3664G", "G3667A", "G3685A", "A3697T", "T3721C", "G3770A", "C3787T", "A3817G", "C3838T", "A3846G", "G3982A", "G4060A", "T4075C", "A4076C", "T4135C", "T4153G", "T4177C", "G4228A", "G4267A", "A4397T", "A4410C", "C4534T", "A4653G", "A4695C", "T4702A", "T4703G", "A4726G", "T4727G", "T4805C", "C4826T", "G4856A", "A5037G", "G5062C", "A5096G", "A5119G", "T5188A", "T5194A", "T5197C", "A5230T", "G5236A", "T5245C", "A5246T", "T5260C", "T5281C", "C5282A", "A5290C", "C5351T", "A5355T", "G5363A", "G5382T", "C5397A", "G5426A", "T5430C", "T5446G", "A5494T", "A5495C", "C5496A", "A5567C", "A5621T", "G5622A", "T5731A", "A5769C", "T5787C", "-5812G", "T5844C", "-5866T", "A5867C", "C5869A", "T5870C", "A5881G", "G5896A", "G5902A", "G5915A", "T5917G", "A5921G", "C5924T", "T5980C", "C6024A", "T6025A", "G6029A", "A6030C", "A6076T", "T6163C", "T6166C", "G6170A", "-6172T", "A6177T", "T6178C", "-6179T", "-6180A", "-6183G", "T6187C", "-6189T", "-6194G", "-6195A", "-6202A", "-6204G", "-6207G", "T6208C", "T6213A", "-6214T", "-6216T", "-6220A", "-6222A", "G6224C", "-6225T", "A6228G", "A6234C", "T6242A", "T6250G", "T6252C", "A6263G", "A6275G", "A6281G", "C6289T", "C6306T", "A6316G", "T6325G", "T6331G", "T6337G", "C6339A", "C6364T", "A6376G", "C6412T", "A6464G", "A6489G", "T6511C", "A6544G", "G6553A", "A6571G", "A6577T", "A6602T", "G6605A", "A6611G", "A6618C", "G6628A", "C6632T", "A6646G", "C6654A", "G6655C", "C6667T", "A6668G", "A6669G", "-6701T", "G6704A", "G6705C", "A6706T", "G6718A", "T6722C", "G6725A", "C6752A", "A6753G", "A6765C", "G6771A", "G6774A", "A6779C", "A6787G", "T6802G", "T6808G", "G6809A", "C6815T", "A6818G", "A6819G", "G6821A", "T6825C", "-6833A", "A6834C", "A6843C", "A6854G", "C6875T", "A6880G", "A6934C", "A6937T", "-6951A", "-6990A", "-6992A", "C6993G", "-6994A", "-6995G", "-6996A", "-6998T", "-6999G", "-7004G", "C7008A", "T7107G", "C7124A", "G7144T", "A7146G", "-7147G", "-7152A", "-7153T", "-7154A", "A7155C", "G7160A", "A7161G", "G7164A", "C7171T", "T7222C", "G7225C", "A7256G", "A7268C", "G7270T", "A7285G", "G7315A", "G7322C", "T7325C", "A7339G", "T7392C", "C7411T", "C7429T", "A7439C", "G7440A", "G7456A", "A7533G", "T7555A", "C7561T", "C7583A", "T7609C", "A7622T", "A7629C", "A7633C", "G7658C", "C7691A", "A7713C", "C7722T", "T7723C", "G7753A", "C7782A", "A7818G", "A7820C", "T7912A", "T7930C", "A7938C", "C7940T", "A7943G", "C7960A", "G7962A", "C7998A", "T8007C", "A8014G", "A8080C", "C8092A", "T8097G", "C8103T", "A8104G", "G8105A", "G8109C", "G8110-", "A8111-", "C8112-", "T8113-", "G8114-", "T8115-", "G8116-", "G8117-", "A8118-", "A8119-", "A8120-", "C8121-", "G8168C", "G8199A", "T8206C", "T8209C", "T8256C", "G8264A", "G8276A", "A8305G", "A8317G", "A8320C", "G8349A", "G8376-", "G8377-", "A8378-", "A8400T", "G8402A", "A8409G", "C8411A", "G8424C", "A8425C", "C8471T", "G8487C", "G8499C", "C8500A", "T8501G", "A8526G", "C8527A", "A8528G", "G8531T", "A8555G", "G8570A", "C8603T", "A8604G", "C8676T", "G8678A", "T8699C", "C8728A", "A8739G", "A8754T", "C8755G", "A8770T", "G8777A", "T8786C", "A8793G", "A8797C", "G8818A", "T8835C", "C8840T", "G8846A", "G8859A", "A8870G", "T8883C", "A8909G", "A8934C", "T8947A", "A8966C", "A8978C", "C9028T", "A9060T", "T9115C", "G9177A"], "INT": ["N24S", "I101L", "I208L", "E212A"], "RT-p51": ["D123N", "S162C", "T173K", "P243A", "G333E", "K358R", "A376S", "L377M", "T386I", "E399D", "V435M"], "RT-p66": ["D123N", "S162C", "T173K", "P243A", "G333E", "K358R", "A376S", "L377M", "T386I", "E399D", "V435M", "A446S", "Q509K", "V559I"], "gp120": ["N5Q", "D21K", "I23V", "P57Q", "E59T", "E74D", "-105S", "-106N", "-107I", "-109I", "-111D", "-116L", "-117E", "-118E", "-119L", "-120G", "-121M", "-122T", "S130T", "N132K", "I133T", "I137V", "T141E", "K143E", "K159E", "N161K", "N204D", "K212R", "E241D", "T250S", "D251N", "N255T", "L260F", "T267N", "N272G", "-282T", "G284-", "Y290H", "A291T", "D294A", "Q300R", "N304T", "S306N", "R307K", "K309Q", "N311K", "N316K", "A319T", "K322G", "E323K", "V324T", "-326T", "N328-", "N334D", "-366N", "T385N", "K391R", "K418R", "L424I", "N434T", "-436S", "S437N", "K457N", "I468V", "K472H"], "gp41": ["V7L", "F8L", "V30A", "R46Q", "K77R", "P94T", "T107S", "D109T", "E110D", "E119Q", "L130I", "S133N", "E137A", "T140I", "S160N", "K172R", "I173L", "N212T", "P213S", "T214A", "G220E", "T232N", "I235T", "F263L", "L265W", "A267V", "A268T", "R269T", "T270-", "V271-", "E272-", "T273-", "V289L", "S299N", "V318A", "V321I", "A325I"], "nef": ["S9-", "G12-", "M20L", "T23A", "E28P", "A49P", "A50T", "A53Q", "T62E", "E63D", "S88G", "P129Q", "I133V", "T138C", "Y143F", "K151E", "E152A", "G159E", "C163S", "K198L", "F202Y"], "p17": ["Q59R", "T95A", "A115T"], "p2": ["A7V", "A10S", "A11-", "A12T", "I13V"], "p24": ["A14S", "S44A", "M54V", "I124V", "A177G"], "p6": ["P5T", "G16S", "S47N"], "p7": ["S4G", "K7R", "K41N"], "pro": ["I15V", "L19Q", "D35E", "V82I"], "rev": ["I18L", "Y28H", "K30N", "P31L", "N32S", "N50K", "S56G", "I78L", "R82S", "S86D", "E87D", "D88-", "C89-", "G90-", "N91-", "G107A"], "tat": ["E2D", "N7K", "R17Q", "S24A", "N40S", "N64T", "L74S", "T77P", "P84Q", "E85K"], "vif": ["S23G", "K37Q", "L39K", "N47R", "T151A", "R159T", "Q178R"], "vpr": ["S28R", "L42F", "N48Y", "L60I", "R62S", "I84L", "A93S"], "vpu": ["E5V", "L42I", "-72G", "-73D"]}, "labels": {"aa": "INT: N24S, I101L, I208L, E212A; RT-p51: D123N, S162C, T173K, P243A, G333E, K358R, A376S, L377M, T386I, E399D, V435M; RT-p66: D123N, S162C, T173K, P243A, G333E, K358R, A376S, L377M, T386I, E399D, V435M, A446S, Q509K, V559I; gp120: N5Q, D21K, I23V, P57Q, E59T, E74D, -105S, -106N, -107I, -109I, -111D, -116L, -117E, -118E, -119L, -120G, -121M, -122T, S130T, N132K, I133T, I137V, T141E, K143E, K159E, N161K, N204D, K212R, E241D, T250S, D251N, N255T, L260F, T267N, N272G, -282T, G284-, Y290H, A291T, D294A, Q300R, N304T, S306N, R307K, K309Q, N311K, N316K, A319T, K322G, E323K, V324T, -326T, N328-, N334D, -366N, T385N, K391R, K418R, L424I, N434T, -436S, S437N, K457N, I468V, K472H; gp41: V7L, F8L, V30A, R46Q, K77R, P94T, T107S, D109T, E110D, E119Q, L130I, S133N, E137A, T140I, S160N, K172R, I173L, N212T, P213S, T214A, G220E, T232N, I235T, F263L, L265W, A267V, A268T, R269T, T270-, V271-, E272-, T273-, V289L, S299N, V318A, V321I, A325I; nef: S9-, G12-, M20L, T23A, E28P, A49P, A50T, A53Q, T62E, E63D, S88G, P129Q, I133V, T138C, Y143F, K151E, E152A, G159E, C163S, K198L, F202Y; p17: Q59R, T95A, A115T; p2: A7V, A10S, A11-, A12T, I13V; p24: A14S, S44A, M54V, I124V, A177G; p6: P5T, G16S, S47N; p7: S4G, K7R, K41N; pro: I15V, L19Q, D35E, V82I; rev: I18L, Y28H, K30N, P31L, N32S, N50K, S56G, I78L, R82S, S86D, E87D, D88-, C89-, G90-, N91-, G107A; tat: E2D, N7K, R17Q, S24A, N40S, N64T, L74S, T77P, P84Q, E85K; vif: S23G, K37Q, L39K, N47R, T151A, R159T, Q178R; vpr: S28R, L42F, N48Y, L60I, R62S, I84L, A93S; vpu: E5V, L42I, -72G, -73D"}}}]}]}]}, {"name": "CRF06_cpx_NODE_0000007", "node_attrs": {"div": 0.08904999999999999, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A518G", "G776T", "A803G", "G1819A", "G2462A", "C4276A", "-5866T", "A6065C", "A6176-", "T6395A", "G6948A", "-7151A", "-7154A", "-7162G", "A7167-", "G7168-", "A7169-", "A7818G", "-8414G", "A8584T", "C8809A"], "INT": ["D167E"], "RT-p51": ["D123N"], "RT-p66": ["D123N"], "gp120": ["N71H", "S181T"], "gp41": ["K172R"], "nef": ["Y81F", "K151R"], "p6": ["S47N"]}, "labels": {"aa": "INT: D167E; RT-p51: D123N; RT-p66: D123N; gp120: N71H, S181T; gp41: K172R; nef: Y81F, K151R; p6: S47N"}}, "children": [{"name": "CRF06_cpx_NODE_0000008", "node_attrs": {"div": 0.09491999999999999, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "A613C", "C827T", "G1256A", "G1449A", "G1450C", "T1451A", "A1642G", "G2422A", "C3620A", "G3756A", "G4228A", "A4427T", "A5131G", "A5140G", "G5363A", "T5446A", "C5478T", "T5491C", "T5511C", "A5545G", "A5566G", "G5725C", "T6100C", "T6193-", "-6225G", "A6282C", "C6289T", "A6327G", "A6588G", "C6752A", "G6774A", "C6797A", "-6951C", "-6952A", "-6986A", "-6987A", "-6992A", "-6995G", "-7000A", "-7001A", "-7003T", "-7156C", "T7172-", "T7325C", "A7339G", "A7345G", "C7460A", "T7516G", "G7517T", "T7642A", "C7691T", "A7693T", "G7765A", "A8219G", "T8268G", "G8276A", "A8425C", "C8491A", "G8561A", "T8935A", "C9017T", "C9028T"], "RT-p66": ["Q509K", "S554N"], "gp120": ["-124G", "K143T", "R307K", "T330N", "F440I"], "gp41": ["F8L", "H53N", "V72L", "D113E", "Q130Y", "I135L", "T306A", "V322G", "A325I"], "nef": ["E28A"], "p1": ["K4R"], "p2": ["A10T"], "vif": ["E185G"], "vpu": ["E40Q"]}, "labels": {"aa": "RT-p66: Q509K, S554N; gp120: -124G, K143T, R307K, T330N, F440I; gp41: F8L, H53N, V72L, D113E, Q130Y, I135L, T306A, V322G, A325I; nef: E28A; p1: K4R; p2: A10T; vif: E185G; vpu: E40Q"}}, "children": [{"name": "KX389609", "node_attrs": {"div": 0.14304999999999998, "accession": "KX389609", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "NG"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10NG030498"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A356G", "G361C", "C362G", "G401A", "G463A", "C482T", "T506C", "A513G", "T514G", "A515G", "A516T", "T531C", "A541G", "G579T", "A605G", "G608A", "A619G", "C626T", "C636G", "T662G", "A685C", "A706C", "C717A", "A725G", "C734T", "A758G", "A759C", "T760C", "G761A", "G762A", 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"E63D", "I133P", "Y143F", "V148I", "K158R", "C163S", "M173F", "I194V"], "p1": ["N9H"], "p17": ["S9T", "R43K", "I60G", "I61L", "S66P", "K69R", "V82L", "K93T", "K95R", "L101V", "N109K", "Q117P", "N124T", "L128I"], "p24": ["M10P", "V11I", "V86I", "I91A", "I96M", "S120G", "I124V", "G225S"], "p6": ["Q28S", "L35I", "L38S"], "p7": ["N12I"], "pro": ["N37D", "L63S", "I64L"], "rev": ["E10A", "Q11D", "L14R", "R66G", "S67P", "I78L", "R82S"], "tat": ["Q13H", "R17K", "T23N", "S24N", "Y32W", "P35Q", "Q54R", "T57G", "P60Q", "S62R", "K63Q", "N64D", "D67N"], "vif": ["M29I", "I31K", "N47Y", "L91M", "S101M", "M109T", "K122R", "H127Q", "R159G", "H187R", "T188S", "H192Q"], "vpr": ["Y15F", "L20I", "S28R", "P37Q", "R62T", "I63M"], "vpu": ["V10A", "V14I", "E58D", "A65L", "T66E", "L67M", "M68G", "-69N", "E70F", "M71D"]}, "labels": {"aa": "INT: I31V, A91S, S119R, A124T, I208M, T218S, V281M; RT-p51: K11Q, P14L, T35K, T39L, M41L, K43E, K104R, T173A, Q245T, D248E, D250E, K281R, V314M, T369V, Q373H, A376S; RT-p66: K11Q, P14L, T35K, T39L, M41L, K43E, K104R, T173A, Q245T, D248E, D250E, K281R, V314M, T369V, Q373H, A376S, K527Q; gp120: S3N, N5-, A16V, D21N, T22P, T35E, L58M, E59D, N64Y, N66D, H71P, -105D, -106I, -107T, -108S, -109N, -111T, -112T, -113T, -114P, -115N, -116S, -117T, -118I, -119D, -120T, -121R, -122N, -123T, K127T, I133V, I137V, K141R, L151I, I156L, -157V, N158P, -159L, N160D, V170A, S171T, I185M, D202E, N206T, T208K, P210H, K212N, I249L, D251N, T255S, K262Q, T267M, N272G, K277R, H280T, I281F, G293D, D294A, Q300K, H302Y, N304K, K309N, N311T, M313A, Q315K, N316G, T318K, A319E, F325L, -326K, N328I, K329T, N334K, S336P, A337V, S365Q, -366S, -367L, -383D, -384G, -385N, K391R, K418T, S419P, L425I, -433K, -436E, -437T, T439V; gp41: L4M, S42G, Q56K, K77R, L91I, Y108E, D109E, D121E, S133E, E137T, E143D, N166S, D247E, S251N, C253F, Y257C, R259H, F263L, V321I, F329L, F340L, A343V; nef: D38A, K39N, H40R, A50Q, T51S, A53E, T62E, E63D, I133P, Y143F, V148I, K158R, C163S, M173F, I194V; p1: N9H; p17: S9T, R43K, I60G, I61L, S66P, K69R, V82L, K93T, K95R, L101V, N109K, Q117P, N124T, L128I; p24: M10P, V11I, V86I, I91A, I96M, S120G, I124V, G225S; p6: Q28S, L35I, L38S; p7: N12I; pro: N37D, L63S, I64L; rev: E10A, Q11D, L14R, R66G, S67P, I78L, R82S; tat: Q13H, R17K, T23N, S24N, Y32W, P35Q, Q54R, T57G, P60Q, S62R, K63Q, N64D, D67N; vif: M29I, I31K, N47Y, L91M, S101M, M109T, K122R, H127Q, R159G, H187R, T188S, H192Q; vpr: Y15F, L20I, S28R, P37Q, R62T, I63M; vpu: V10A, V14I, E58D, A65L, T66E, L67M, M68G, -69N, E70F, M71D"}}}, {"name": "MN153481", "node_attrs": {"div": 0.13593, "accession": "MN153481", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "CM"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06CMARC13"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G190T", "C193T", "T201C", "A215-", "A216-", "T217-", "G256A", "A302T", "G378C", "T467C", "G480A", "G495A", "A503C", "A612T", "G615A", "C636T", "A682G", "G696A", "C731T", "G740A", 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"G6303A", "A6304G", "C6317G", "G6323A", "A6326G", "T6328G", "T6331C", "C6363T", "G6379A", "A6430T", "G6451A", "A6464G", "T6466G", "T6472C", "T6511C", "A6573G", "G6575A", "A6576G", "A6577G", "A6583G", "G6611A", "C6632T", "G6655A", "A6689-", "T6690-", "C6694T", "T6697A", "-6698C", "-6699A", "-6700C", "-6701A", "-6702T", "-6703T", "G6718A", "T6735A", "A6754C", "A6779G", "T6781G", "A6785G", "A6786T", "T6787C", "T6790G", "G6799T", "A6812G", "A6820G", "T6827A", "T6856C", "A6884-", "C6885-", "A6886-", "A6887-", "T6932A", "A6937C", "A6945T", "A6950G", "-6983T", "-6984C", "-6985A", "-6988A", "-6989A", "-6990T", "-6991T", "-6993A", "-6994T", "-6996G", "-6997A", "-6998T", "-6999C", "-7002T", "A7013C", "C7014A", "C7019T", "G7026A", "G7044A", "T7059C", "T7075C", "C7084T", "T7107A", "C7114T", "A7129G", "G7144T", "-7146A", "-7147T", "A7149G", "-7152C", "-7153T", "G7199A", "G7225A", "T7243A", "C7267A", "A7268C", "G7270T", "C7327T", "T7330G", "T7392C", "A7396G", "G7428A", "G7456A", "G7508C", "A7532C", "A7549G", "C7583A", "A7604G", "C7605A", "A7628C", "T7630G", "A7676C", "A7685T", "A7701G", "C7702T", "C7747A", "G7753A", "G7790A", "A7791G", "A7820C", "G7862A", "G7883A", "C7885T", "T7912A", "T7913A", "G7915A", "G7918A", "G7947A", "C7951A", "A7965G", "A8014G", "G8017C", "T8025C", "A8032G", "G8036A", "C8037T", "C8047T", "G8050A", "T8060A", "T8064G", "A8088G", "C8121T", "G8159T", "T8176C", "T8205C", "G8208A", "T8256C", "T8293G", "A8294C", "A8320T", "A8323T", "G8349A", "A8400C", "G8487C", "A8490G", "G8502A", "G8554C", "T8582A", "T8594C", "A8635G", "T8636A", "A8653G", "G8654A", "C8676T", "C8684T", "T8687C", "G8697A", "T8699G", "C8702T", "A8746T", "T8751C", "C8775T", "T8786C", "C8812A", "A8829T", "T8847A", "G8859A", "A8874G", "A8922T", "C8928A", "G8936A", "T8947A", "A9005G", "C9018T", "T9019G", "C9023A", "G9026A", "G9030T", "A9060T", "G9069T", "T9071A", "T9072A", "C9073T", "C9075T", "T9078C", "G9080T", "T9081G", "C9083G", "G9086C", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "T9095-", "G9096-", "C9097T", "G9100A", "C9102G", "C9103T", "A9106-", "T9108G", "A9111T", "T9115C", "G9117T", "G9118C", "A9119T", "C9121T", "A9128G", "C9129-", "G9132A", "A9134T", "G9135A", "G9137A", "A9140T", "A9144T", "T9146A", "C9148A", "T9149C"], "INT": ["E13D", "S39N", "M50I", "T97A", "K111T", "I135V", "Q137H", "K173R", "E212I", "T218L", "K219N", "N222K"], "RT-p51": ["V21I", "T39E", "I135K", "S162C", "T173R", "V179E", "Q334R", "G335D", "I357A", "K358R", "L377Q", "K385R", "K388R", "V435L"], "RT-p66": ["V21I", "T39E", "I135K", "S162C", "T173R", "V179E", "Q334R", "G335D", "I357A", "K358R", "L377Q", "K385R", "K388R", "V435L", "N447D", "E449T", "R461K", "L469I", "T477A", "N483Y", "L503I", "K527N", "V531I"], "gp120": ["N5D", "L6M", "Q54K", "-105I", "T110-", "-123K", "I126M", "R150K", "P155A", "-157N", "N158G", "-159N", "N160S", "N161S", "S162T", "N204E", "E240G", "E241R", "I243M", "A253T", "L260F", "T292I", "G296R", "D297N", "I298N", "R299-", "Q300-", "K309E", "N311V", "N312K", "Q315N", "K320E", "F325I", "N327-", "T344-", "T345-", "V402A", "-433S", "N434T", "-436N", "I440V", "D449N", "K472H"], "gp41": ["V30A", "S42N", "V69L", "K77Q", "P94T", "T101D", "D109Q", "N125H", "T128S", "D148E", "D163S", "I173L", "V187I", "V194I", "L204I", "G215E", "E221G", "F241S", "A245I", "C253S", "L254R", "D262G", "T273I", "G286W", "I301T", "S302N", "V318A", "N331H"], "nef": ["G3S", "I20L", "A49P", "A50D", "A54T", "R71T", "K104R", "Y135F", "E156D", "T157N", "I168M", "C169S", "R178G", "I194L", "F202Y"], "p17": ["E15Q", "G49S", "A54T", "I61M", "K93S", "V94I", "Q116R", "A121T"], "p24": ["I15V", "M54L", "V83L", "E128D", "L211I"], "p6": ["-26K", "Q28E", "E29T", "P30K", "K31E", "E32-", "K33-", "S51L"], "p7": ["S4G", "R10N", "N12K"], "pro": ["R14K", "I20V"], "rev": ["I18L", "S56G", "E57Q", "T62A", "C63Y", "A68T", "V71E", "G104V"], "tat": ["K19Q", "T23S", "S24T", "T57A", "N64A", "H65Y", "E80K", "P81Q", "K86E"], "vif": ["N19H", "T20R", "H30N", "I31V", "L39M", "K122T", "I124L", "H127Y", "D134E", "R159S", "R181K"], "vpr": ["D7N", "S28I", "N41D", "Y45H", "E55Q", "I60L", "L67I", "H77Q", "I84T", "R85L"], "vpu": ["E5V", "S7L", "V10I", "V13I", "L17I", "Q29E", "E32K", "K38N", "K41R", "R47S", "T61K", "-72G", "-73D", "-74F", "-75D"]}, "labels": {"aa": "INT: E13D, S39N, M50I, T97A, K111T, I135V, Q137H, K173R, E212I, T218L, K219N, N222K; RT-p51: V21I, T39E, I135K, S162C, T173R, V179E, Q334R, G335D, I357A, K358R, L377Q, K385R, K388R, V435L; RT-p66: V21I, T39E, I135K, S162C, T173R, V179E, Q334R, G335D, I357A, K358R, L377Q, K385R, K388R, V435L, N447D, E449T, R461K, L469I, T477A, N483Y, L503I, K527N, V531I; gp120: N5D, L6M, Q54K, -105I, T110-, -123K, I126M, R150K, P155A, -157N, N158G, -159N, N160S, N161S, S162T, N204E, E240G, E241R, I243M, A253T, L260F, T292I, G296R, D297N, I298N, R299-, Q300-, K309E, N311V, N312K, Q315N, K320E, F325I, N327-, T344-, T345-, V402A, -433S, N434T, -436N, I440V, D449N, K472H; gp41: V30A, S42N, V69L, K77Q, P94T, T101D, D109Q, N125H, T128S, D148E, D163S, I173L, V187I, V194I, L204I, G215E, E221G, F241S, A245I, C253S, L254R, D262G, T273I, G286W, I301T, S302N, V318A, N331H; nef: G3S, I20L, A49P, A50D, A54T, R71T, K104R, Y135F, E156D, T157N, I168M, C169S, R178G, I194L, F202Y; p17: E15Q, G49S, A54T, I61M, K93S, V94I, Q116R, A121T; p24: I15V, M54L, V83L, E128D, L211I; p6: -26K, Q28E, E29T, P30K, K31E, E32-, K33-, S51L; p7: S4G, R10N, N12K; pro: R14K, I20V; rev: I18L, S56G, E57Q, T62A, C63Y, A68T, V71E, G104V; tat: K19Q, T23S, S24T, T57A, N64A, H65Y, E80K, P81Q, K86E; vif: N19H, T20R, H30N, I31V, L39M, K122T, I124L, H127Y, D134E, R159S, R181K; vpr: D7N, S28I, N41D, Y45H, E55Q, I60L, L67I, H77Q, I84T, R85L; vpu: E5V, S7L, V10I, V13I, L17I, Q29E, E32K, K38N, K41R, R47S, T61K, -72G, -73D, -74F, -75D"}}}]}, {"name": "CRF06_cpx_NODE_0000009", "node_attrs": {"div": 0.09129, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-303A", "A541G", "A619C", "A1501G", "A1562G", "T1712C", "A1933G", "G3808T", "-5824A", "-6172A", "-6196T", "-6202T", "-6203G", "-6213T", "G6333A", "C6618T", "A6841G", "-6971A", "-7007A", "-7009C", "G7026A", "-7153C", "-7156T", "G7166-", "G7212A", "A7604G", "T8277C", "G8534T", "C9047A"], "INT": ["E11D"], "gp120": ["-109I", "-111N", "-113N", "R245K", "T255I", "N435S", "-437S", "S453N"], "gp41": ["T101A", "D109N"], "nef": ["E64D", "K198L"], "p17": ["K69R", "K95T"], "p7": ["N12S"], "tat": ["E80K"], "vif": ["G182D"]}, "labels": {"aa": "INT: E11D; gp120: -109I, -111N, -113N, R245K, T255I, N435S, -437S, S453N; gp41: T101A, D109N; nef: E64D, K198L; p17: K69R, K95T; p7: N12S; tat: E80K; vif: G182D"}}, "children": [{"name": "AB485660", "node_attrs": {"div": 0.11918999999999999, "accession": "AB485660", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "CD"}, "Strain_name": {"value": "BCF_Dioum"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T24A", "T165A", "G202T", "G256A", "A263G", "C362T", "A388G", "A399C", "G424A", "C426A", "T467C", "A500T", "G518A", "A548G", "A618G", "C636G", "G678A", "C694G", "T716G", "C717T", "T776G", "C827T", "C974T", "T992C", "C1094T", "C1136A", "T1229C", "A1242G", "C1243T", "A1278G", "A1279G", "C1350T", "G1404A", "G1449-", "G1450-", "T1451-", "C1453G", "G1455A", "C1456A", "A1457C", "G1458A", "C1490T", "C1514T", "A1616C", "G1619A", "C1680A", "T1682C", "C1756A", "C1767T", "-1775C", "A1841G", "A1969G", "A1984T", "A2007G", "G2042A", "A2273G", "C2326T", "A2344G", "C2353T", "T2383C", "A2446C", "T2453C", "A2579T", "A2629G", "C2671T", "G2878A", "G2946A", "C2960T", "C3023T", "G3091A", "G3124A", "C3140T", "G3151A", "G3211A", "G3217A", "C3224A", "G3398A", "A3430G", "A3442G", "A3450T", "C3500A", "C3550A", "C3589T", "C3620A", "T3652C", "A3684G", "A3715G", "G3718A", "C3751T", "T3904C", "C3977T", "G3982A", "G4060A", "G4109A", "G4111A", "T4135C", "A4155G", "T4396C", "A4543C", "A4688G", "T4702G", "A4725C", "T4767A", "G4773C", "G4835A", "G4878A", "C4898T", "A4937C", "A4993C", "A4994T", "C5006A", "A5007C", "A5061G", "G5062A", "G5123A", "T5170G", "C5327T", "C5333T", "A5335G", "C5336A", "C5358A", "A5375G", "T5412G", "G5484A", "A5538G", "C5569A", "C5579A", "T5688C", "A5707C", "G5708A", "A5722G", "G5730A", "G5784A", "T5787A", "A5788T", "C5789T", "A5790G", "T5857A", "A5867G", "T5870C", "A5881G", "C5901T", "T5938G", "C6023A", "A6066C", "C6067T", "T6169C", "-6170A", "-6174C", "-6175T", "-6176G", "-6177T", "-6179A", "-6180T", "-6181T", "-6182A", "-6183C", "-6189A", "-6194G", "-6195C", "A6197G", "-6198G", "-6201C", "-6204G", "-6205G", "-6206A", "-6207G", "-6208G", "-6209A", "-6210T", "-6211G", "-6212G", "-6214A", "-6216T", "A6221-", "A6223-", "G6224-", "A6226-", "G6227-", "A6234G", "A6263T", "A6275C", "T6325G", "A6330G", "T6347C", "C6363T", "A6368G", "T6487C", "A6490C", "G6605A", "G6628A", "T6641G", "A6649G", "A6686G", "-6688G", "-6691A", "-6692C", "-6693A", "G6716A", "A6742T", "G6774A", "A6776G", "C6777A", "A6779C", "T6787G", "G6805A", "C6807G", "G6809A", "A6813C", "C6815T", "A6818C", "A6822G", "-6833A", "-6834A", "-6835G", "T6838C", "A6843C", "C6849T", "A6881G", "G6905A", "A6913G", "-6951G", "-6952T", "-6953A", "-6954T", "-6955G", "-6956C", "-6957T", "-6958A", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964T", "-6965A", "-6966A", "-6967T", "-6968G", "-6969A", "-6970G", "-6972G", "-6973A", "-6974T", "-6975A", "-6976T", "-6977G", "-6978A", "-6979A", "-6980T", "-6981G", "-6982G", "-6983T", "-6984A", "-6985A", "-7003T", "-7004G", "-7005A", "-7006G", "-7008C", "G7027A", "T7107A", "-7146G", "-7147T", "-7152G", "T7165C", "A7237G", "A7239G", "A7312C", "G7322T", "A7471G", "A7477T", "G7508C", "C7605T", "A7620G", "C7623A", "T7625C", "A7626T", "A7629G", "A7633C", "G7658C", "A7672G", "A7676G", "C7678A", "A7722G", "G7769A", "G7790A", "A7791G", "C7805T", "G7947A", "C8048G", "A8069G", "A8119G", "A8130G", "T8169G", "C8213A", "A8222G", "G8255A", "G8264A", "T8290C", "A8320C", "G8330C", "C8331T", "T8333C", "G8453A", "A8490G", "G8499A", "C8500A", "C8504T", "T8514G", "G8537T", "C8603A", "A8604G", "C8688A", "G8753A", "T8756C", "C8771T", "T8810G", "A8829T", "G8846A", "G8852A", "T8860C", "G8861A", "G8882C", "G8902C", "A8922G", "A8934C", "T8974C", "C8975A", "T9029G", "C9039T", "T9109A"], "INT": ["V112I", "K127R", "E256D"], "RT-p51": ["I60V", "S162C", "I178M", "R284K", "L377I", "V435I"], "RT-p66": ["I60V", "S162C", "I178M", "R284K", "L377I", "V435I", "K452I", "L469I", "Q509K", "K530R"], "gp120": ["S1R", "N5D", "A16V", "P57T", "H71P", "-105N", "-106I", "-107T", "-108V", "-112S", "-114A", "-115S", "E125-", "K127R", "I137L", "K141Q", "-157E", "-159S", "N161S", "S162T", "T172A", "K212N", "D251N", "S263A", "S278G", "A288T", "D294E", "R307K", "T308E", "K309H", "N311K", "T318S", "A319T", "K320T", "K322Q", "E323G", "-326K", "N328-", "T332I", "I343V", "G351R", "S365N", "-366S", "-367M", "-368L", "-369N", "-370S", "-371N", "-372E", "-373T", "-433S", "-436S", "K462R"], "gp41": ["V7F", "V69L", "A101V", "K106R", "T107N", "Y108L", "N109S", "E110D", "E119Q", "N125E", "S133N", "I135L", "N140S", "A156T", "D163S", "G215E", "L249V", "S256G", "H276R", "V289G", "L304I", "T307A", "V318I", "V321I", "F340L", "A343L"], "nef": ["A53N", "L58V", "S88G", "H116N", "M173A", "S187T", "I194V"], "p17": ["K18R", "R30K", "L31M", "E55D", "T95A", "L101V", "A115T", "L128F"], "p2": ["A10N", "A11-", "A12T"], "p24": ["I15M", "T171V", "N183G", "P207S", "G225S"], "p6": ["L1I", "P23-", "S24P", "P25S", "-26Q", "P30S", "E32D"], "pro": ["I15V", "K70R", "V82I"], "rev": ["N8S", "L22M", "S67R", "Q74R", "N91D"], "tat": ["N12K", "H65N", "P68H"], "vif": ["L39S", "N47H", "C61S", "E63Q", "V98I", "E117D", "Q136P", "N140K", "K141Q", "R159E"], "vpr": ["D7N", "H77R"], "vpu": ["R34Q", "I39V", "D60E", "T61L", "E62A", "E63A", "A65M", "T66E", "L67M", "M68G", "-69N", "E70F", "M71D"]}, "labels": {"aa": "INT: V112I, K127R, E256D; RT-p51: I60V, S162C, I178M, R284K, L377I, V435I; RT-p66: I60V, S162C, I178M, R284K, L377I, V435I, K452I, L469I, Q509K, K530R; gp120: S1R, N5D, A16V, P57T, H71P, -105N, -106I, -107T, -108V, -112S, -114A, -115S, E125-, K127R, I137L, K141Q, -157E, -159S, N161S, S162T, T172A, K212N, D251N, S263A, S278G, A288T, D294E, R307K, T308E, K309H, N311K, T318S, A319T, K320T, K322Q, E323G, -326K, N328-, T332I, I343V, G351R, S365N, -366S, -367M, -368L, -369N, -370S, -371N, -372E, -373T, -433S, -436S, K462R; gp41: V7F, V69L, A101V, K106R, T107N, Y108L, N109S, E110D, E119Q, N125E, S133N, I135L, N140S, A156T, D163S, G215E, L249V, S256G, H276R, V289G, L304I, T307A, V318I, V321I, F340L, A343L; nef: A53N, L58V, S88G, H116N, M173A, S187T, I194V; p17: K18R, R30K, L31M, E55D, T95A, L101V, A115T, L128F; p2: A10N, A11-, A12T; p24: I15M, T171V, N183G, P207S, G225S; p6: L1I, P23-, S24P, P25S, -26Q, P30S, E32D; pro: I15V, K70R, V82I; rev: N8S, L22M, S67R, Q74R, N91D; tat: N12K, H65N, P68H; vif: L39S, N47H, C61S, E63Q, V98I, E117D, Q136P, N140K, K141Q, R159E; vpr: D7N, H77R; vpu: R34Q, I39V, D60E, T61L, E62A, E63A, A65M, T66E, L67M, M68G, -69N, E70F, M71D"}}}, {"name": "CRF06_cpx_NODE_0000010", "node_attrs": {"div": 0.09493, "clade_membership": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-304A", "-305A", "A806G", "A1019G", "T1379C", "T1741C", "-1775A", "A2014G", "A3061G", "A3526G", "A3846G", "A4696G", "C4724T", "G4856A", "G4981A", "G5176A", "G5236A", "A5246G", "G5482C", "A5957G", "A6186T", "T6187A", "-6194A", "-6198A", "-6218G", "A6251G", "A6329G", "G6336A", "C6339G", "A6544G", "A6599C", "C6654G", "A6779G", "A6780C", "G6935C", "-6974A", "A7366G", "A7701G", "C7706A", "T8288G", "C8590G", "T8786C", "A9009G", "G9049A"], "INT": ["N24S"], "gp120": ["T35A", "-108N", "-124E", "I133V", "K309A", "E361Q", "-373S", "-378N", "-380T"], "gp41": ["F329V"], "nef": ["A50T", "A83G", "I168M"], "p17": ["I61M"], "p24": ["I96M"], "p6": ["I21T"], "pro": ["I72M"], "tat": ["V36L"], "vpu": ["-72G", "-73N", "-74F", "-75D"]}, "labels": {"aa": "INT: N24S; gp120: T35A, -108N, -124E, I133V, K309A, E361Q, -373S, -378N, -380T; gp41: F329V; nef: A50T, A83G, I168M; p17: I61M; p24: I96M; p6: I21T; pro: I72M; tat: V36L; vpu: -72G, -73N, -74F, -75D"}}, "children": [{"name": "AJ288982", "node_attrs": {"div": 0.11973, "accession": "AJ288982", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "ML"}, "date": {"value": 1995.0}, "Strain_name": {"value": "95ML127"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T154G", "A159G", "A161G", "T306A", "G310C", "A311-", "C435T", "G480A", "C636T", "G683A", "A743G", "A815G", "G977A", "A1089G", "A1101G", "G1184A", "C1211T", "T1238C", "G1256A", "G1449A", "G1450C", "T1451A", "G1452T", "C1453T", "G1455A", "T1483A", "G1495A", "A1525G", "C1610T", "A1643G", "G1673A", "A1715G", "A1758G", "G1764A", "G1794A", "A1804G", "A2007G", "A2029G", "A2241G", "C2353T", "T2393C", "G2398A", "A2437G", "G2447A", "G2459A", "A2462G", "A2470G", "T2499C", "G2548A", "A2579T", "G2602T", "C2613T", "A2627C", "A2629G", "G2725A", "A2815C", "G2837A", "T2845G", "C2853G", "G2855A", "G2875A", "C2909T", "A2925G", "G2926A", "G3031A", "G3037A", "T3045C", "G3162A", "G3173A", "C3175T", "G3217A", "C3224A", "T3225G", "A3280G", "G3292A", "C3415T", "A3451G", "A3503G", "G3667A", "G3756A", "G3907A", "C4006T", "T4039A", "A4285G", "C4471T", "C4501T", "G4581A", "T4670C", "T4702C", "A4737G", "C4826T", "A4861G", "A4887G", "A4937G", "T4967A", "A4980C", "C4988T", "C5091T", "C5162T", "T5170C", "A5223T", "C5227T", "T5311C", "A5346G", "G5433A", "T5446C", "T5467A", "T5472C", "C5480A", "G5589A", "A5594G", "C5614T", "T5670G", "A5717G", "G5737A", "A5781G", "C5792A", "C5795A", "C5797T", "T5799G", "A5800G", "T5801C", "G5802A", "A5804C", "A5806T", "G5808T", "G5809-", "G5810-", "G5811-", "-5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5881G", "G5893A", "A5962G", "G6029A", "A6059G", "C6097T", "A6159T", "-6170A", "-6174A", "T6178-", "-6189C", "A6192G", "-6195C", "-6201G", "T6202C", "G6203A", "-6204C", "-6205C", "-6206A", "-6207A", "-6208A", "-6209A", "-6210A", "-6211T", "-6212A", "-6214C", "-6216T", "-6219A", "-6220G", "-6222G", "A6223C", "-6225G", "A6275C", "A6281G", "G6323A", "A6326G", "C6496T", "G6593A", "G6611A", "G6655T", "A6659T", "A6689-", "T6690-", "C6694T", "T6697A", "-6698C", "-6699A", "-6700C", "-6701A", "-6702T", "-6703T", "T6733A", "G6743A", "C6752A", "C6777A", "A6789G", "-6833A", "-6834A", "-6835T", "C6844T", "T6853C", "T6862A", "A6881G", "A6934G", "A6937G", "-6951A", "-6952T", "-6953A", "-6954T", "-6955A", "-6956A", "-6957C", "-6958A", "-6959G", "-6960A", "-6961T", "-6962A", "-6963G", "-6964T", "-6965A", "-6966A", "-6967T", "-6968G", "-6969A", "-6970G", "-6972C", "-6973C", "-6975C", "-7006C", "-7008A", "C7009T", "A7010T", "A7042C", "G7054A", "G7062C", "T7087C", "C7101T", "T7107C", "-7146G", "-7147G", "-7152G", "A7158G", "T7165C", "T7220G", "C7250T", "A7269G", "G7293A", "T7309A", "A7312G", "G7508A", "C7579T", "T7609C", "T7748C", "G7765A", "A7826G", "G7831A", "A7847T", "T7852G", "A7861T", "C7874T", "A7948G", "G7977A", "G8050A", "C8065T", "A8118G", "A8163G", "T8173G", "G8208A", "T8243G", "G8264A", "T8290G", "G8304C", "A8323T", "G8349A", "G8354A", "A8378G", "G8424A", "G8441A", "G8453A", "G8479A", "G8487C", "C8521A", "T8534C", "T8567C", "A8588G", "C8603T", "A8604G", "G8666A", "T8675C", "T8701A", "T8708C", "C8741T", "T8810A", "T8860C", "A8874G", "T8883C", "G8915A", "A8934C", "G8945C", "G9016A", "A9050C"], "INT": ["R269K"], "RT-p51": ["K49R", "V118I", "E122K", "N123D", "I135T", "S162C", "E169D", "T173I", "I178L", "D248N", "D250E", "T253S", "V254I", "P272S", "K277R", "V317A", "R356K", "A360T", "L377R"], "RT-p66": ["K49R", "V118I", "E122K", "N123D", "I135T", "S162C", "E169D", "T173I", "I178L", "D248N", "D250E", "T253S", "V254I", "P272S", "K277R", "V317A", "R356K", "A360T", "L377R", "T470A", "S554N"], "gp120": ["E59K", "K69E", "N102I", "-105N", "-106I", "N111S", "-112T", "-114S", "-115T", "-116K", "-117N", "-118I", "-119T", "-120V", "-121E", "-122S", "-123G", "K141Q", "K143E", "-159D", "N160G", "N161S", "V170A", "E247K", "I249L", "A253T", "T267S", "T269S", "D294E", "D297N", "Q300K", "T308K", "N312S", "T330N", "I343V", "S365N", "-369N", "-370I", "-371T", "-372D", "-374N", "-375E", "-376T", "-377T", "-379F", "I386-", "T387-", "G403A", "T416I", "K418T", "N432R", "-433N", "N434D", "-436N", "Y456D", "K472R", "R480K"], "gp41": ["V69I", "I175V", "M176I", "I182L", "L191F", "G225E", "E272G", "N287S", "C290W", "S302N", "W314G", "V321I", "R334T"], "nef": ["G3S", "E28K", "S46N", "A49P", "A60E", "S88G", "F120Y", "C163S", "M173A", "R178G", "E201D"], "p17": ["G49S"], "p2": ["A10T", "A11L", "A12T"], "p24": ["S120G", "I124V"], "p6": ["-26E", "K27-", "E29K", "A39T", "K42R"], "p7": ["F6Y", "R10K", "K20R"], "pro": ["K70R"], "rev": ["S25N", "S34G", "S67P", "A68T", "L73F", "L109V"], "tat": ["S24P", "C31S", "P35Q", "K80G"], "vif": ["K37R", "L39T", "I51V", "K92R", "S101G", "H127Q", "R132Q"], "vpr": ["H40L", "N48D", "I81V"], "vpu": ["P3S", "K37R", "D44N", "T66A", "L67F"]}, "labels": {"aa": "INT: R269K; RT-p51: K49R, V118I, E122K, N123D, I135T, S162C, E169D, T173I, I178L, D248N, D250E, T253S, V254I, P272S, K277R, V317A, R356K, A360T, L377R; RT-p66: K49R, V118I, E122K, N123D, I135T, S162C, E169D, T173I, I178L, D248N, D250E, T253S, V254I, P272S, K277R, V317A, R356K, A360T, L377R, T470A, S554N; gp120: E59K, K69E, N102I, -105N, -106I, N111S, -112T, -114S, -115T, -116K, -117N, -118I, -119T, -120V, -121E, -122S, -123G, K141Q, K143E, -159D, N160G, N161S, V170A, E247K, I249L, A253T, T267S, T269S, D294E, D297N, Q300K, T308K, N312S, T330N, I343V, S365N, -369N, -370I, -371T, -372D, -374N, -375E, -376T, -377T, -379F, I386-, T387-, G403A, T416I, K418T, N432R, -433N, N434D, -436N, Y456D, K472R, R480K; gp41: V69I, I175V, M176I, I182L, L191F, G225E, E272G, N287S, C290W, S302N, W314G, V321I, R334T; nef: G3S, E28K, S46N, A49P, A60E, S88G, F120Y, C163S, M173A, R178G, E201D; p17: G49S; p2: A10T, A11L, A12T; p24: S120G, I124V; p6: -26E, K27-, E29K, A39T, K42R; p7: F6Y, R10K, K20R; pro: K70R; rev: S25N, S34G, S67P, A68T, L73F, L109V; tat: S24P, C31S, P35Q, K80G; vif: K37R, L39T, I51V, K92R, S101G, H127Q, R132Q; vpr: H40L, N48D, I81V; vpu: P3S, K37R, D44N, T66A, L67F"}}}, {"name": "AJ245481", "node_attrs": {"div": 0.12136, "accession": "AJ245481", "clade_membership": {"value": "CRF06_cpx"}, "country": {"value": "ML"}, "date": {"value": 1995.0}, "Strain_name": {"value": "95ML84"}, "LANL_subtype": {"value": "CRF06_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A157T", "-166A", "T200C", "A317G", "A374G", "C426A", "G495T", "G534A", "T575C", "A664G", "G671A", "C679T", "A714C", "T716G", "G762A", "A764C", "T808C", "C851T", "G978A", "A980G", "T992G", "T1004G", "A1066T", "A1241G", "T1409C", "A1418G", "G1452A", "C1460A", "G1493A", "G1498A", "G1501T", "A1503-", "T1504-", "T1505-", "G1592A", "A1642G", "A1657G", "A1670G", "T1676C", "C1756T", "G1766A", "G1781A", "A1838G", "G1845A", "A1855G", "C1960T", "A1993G", "T2107C", "G2156A", "G2173A", "T2323C", "T2383C", "A2403G", "A2457G", "T2458C", "A2498T", "C2589T", "C2596T", "A2617G", "G2632A", "A2767G", "A2929T", "T3002C", "G3010A", "C3060T", "A3080C", "G3127A", "A3166G", "A3168G", "G3188A", "A3230G", "G3231C", "C3252T", "C3358T", "A3430G", "G3438A", "G3477A", "A3489G", "G3494A", "A3651G", "T3652C", "A3760G", "G3769A", "C3787A", "G3869C", "G3886A", "A3890T", "G3952A", "C4123T", "G4145A", "A4178G", "A4276C", "A4543T", "A4567G", "A4644G", "A4661G", "C4674A", "A4677G", "A4695G", "A4701C", "A4782G", "A4818G", "G4864A", "A4871G", "A4968G", "A5045G", "A5056G", "A5142T", "C5248G", "A5278G", "C5294T", "G5330A", "C5336A", "C5342T", "A5357G", "A5375G", "C5397A", "A5462G", "A5481G", "T5568C", "A5632G", "C5641T", "G5644A", "T5687A", "A5721G", "A5733G", "A5748G", "G5794A", "T5844C", "T5861A", "A5865G", "T5870C", "C5901T", "C5920A", "T5929C", "T5971C", "G6074C", "C6134T", "A6136G", "T6169C", "-6170G", "-6174C", "-6175A", "-6176G", "-6177A", "-6179C", "-6180A", "-6181T", "-6182G", "-6183G", "T6184A", "-6189A", "T6193C", "-6195A", "T6199C", "-6201C", "-6214A", "A6215G", "-6216A", "-6219G", "-6220T", "-6222A", "-6225A", "C6247T", "G6267A", "T6287C", "A6288G", "C6289T", "G6303C", "A6330G", "T6337C", "G6362A", "G6379A", "A6395T", "T6418C", "A6574T", "T6600A", "G6605A", "A6616G", "T6641A", "G6647C", "A6669G", "A6682G", "-6688T", "-6691A", "-6692C", "-6693C", "A6695C", "T6781A", "T6787G", "A6788G", "T6790G", "T6792C", "C6810A", "G6821C", "T6827C", "A6840C", "T6857C", "G6905A", "A6948G", "A6950-", "-6972G", "-6973T", "-6975T", "-6976A", "-6977C", "-6978C", "-6979A", "-6980G", "-6981A", "-6982G", "-6983A", "-6984G", "-6985T", "-6986A", "-6987A", "-6988T", "-6989G", "-6990A", "-6991G", "-6992A", "-6993C", "-6994T", "-6995G", "-6996A", "-6997T", "-7008T", "G7072A", "G7145-", "-7152C", "C7153T", "A7158C", "G7160A", "A7161C", "G7162C", "C7164G", "-7166G", "-7167A", "-7168G", "-7169A", "-7170T", "-7171C", "T7172A", "A7216G", "G7225A", "A7268G", "C7313A", "G7315A", "T7321G", "G7322T", "A7620G", "A7626T", "G7640A", "A7722G", "G7782A", "A7795C", "G7818A", "A7903G", "A7943G", "G7947A", "C7950T", "A7965G", "C7998A", "C8047T", "A8130G", "G8159T", "T8209C", "C8213A", "A8230T", "A8320G", "T8321G", "T8322C", "C8336A", "A8370C", "A8458C", "G8459A", "C8488T", "G8570A", "G8666C", "A8829T", "T8847A", "G8859A", "T8923C", "A8978G"], "INT": ["V32L", "S39C", "A124T", "I135V", "E167D", "E256D"], "RT-p51": ["V21I", "K103R", "D121G", "I135L", "T165I", "Q278H", "S322L", "I329L", "I357M", "K358R", "V365I", "S379A", "T386I"], "RT-p66": ["V21I", "K103R", "D121G", "I135L", "T165I", "Q278H", "S322L", "I329L", "I357M", "K358R", "V365I", "S379A", "T386I", "R448K", "R461K", "K465R", "V467I", "N519S"], "gp120": ["S3T", "N4S", "A16V", "E74Q", "I109V", "-112N", "-114T", "-115V", "-116E", "-117G", "-123K", "R138K", "Y145R", "R150T", "-157D", "-159G", "V170T", "T181S", "E240D", "I249H", "D251N", "S263T", "E265Q", "T267R", "N272S", "H280P", "I281L", "N311K", "N312E", "M313T", "A319E", "E323Q", "F325L", "-326N", "N327T", "K329I", "I331-", "T332-", "S335P", "G351R", "-374I", "-375P", "-376E", "-377S", "-379E", "-384D", "-385I", "M406I", "K418I", "G431-", "-433T", "S435T", "-436T", "T439I", "F440I", "K472E"], "gp41": ["L4I", "V7F", "K106R", "Y108F", "D113N", "N140S", "S160N", "R172K", "T214A", "G215E", "A216V", "E221G", "T232N", "H276R", "G286W", "L304I", "F340A", "L345I"], "nef": ["I10L", "K39T", "A49V", "E108D", "E156D", "C169S", "I194T", "L198M"], "p1": ["K4R", "N9S"], "p17": ["L31M", "A54S", "A67T", "K110R", "A115V", "N127Q"], "p2": ["S8T", "G9V"], "p24": ["V11I", "V26A", "V83M", "H87Q", "I91M", "Q112L"], "p6": ["P23-", "S24P", "P25S", "-26L"], "p7": ["R11K", "S12I", "I13-"], "pro": ["R14G", "G16E"], "rev": ["I18T", "N32S", "N50K", "G104V"], "tat": ["N7K", "K29R", "P81S", "K86E"], "vif": ["T20A", "H30N", "I31V", "K37G", "I66V", "K78E", "R93K", "I128V", "R132K", "K157R", "S186C"], "vpr": ["E13V", "N48E", "H77Q", "I84M"], "vpu": ["I9V", "V13I", "F27Y", "E62D"]}, "labels": {"aa": "INT: V32L, S39C, A124T, I135V, E167D, E256D; RT-p51: V21I, K103R, D121G, I135L, T165I, Q278H, S322L, I329L, I357M, K358R, V365I, S379A, T386I; RT-p66: V21I, K103R, D121G, I135L, T165I, Q278H, S322L, I329L, I357M, K358R, V365I, S379A, T386I, R448K, R461K, K465R, V467I, N519S; gp120: S3T, N4S, A16V, E74Q, I109V, -112N, -114T, -115V, -116E, -117G, -123K, R138K, Y145R, R150T, -157D, -159G, V170T, T181S, E240D, I249H, D251N, S263T, E265Q, T267R, N272S, H280P, I281L, N311K, N312E, M313T, A319E, E323Q, F325L, -326N, N327T, K329I, I331-, T332-, S335P, G351R, -374I, -375P, -376E, -377S, -379E, -384D, -385I, M406I, K418I, G431-, -433T, S435T, -436T, T439I, F440I, K472E; gp41: L4I, V7F, K106R, Y108F, D113N, N140S, S160N, R172K, T214A, G215E, A216V, E221G, T232N, H276R, G286W, L304I, F340A, L345I; nef: I10L, K39T, A49V, E108D, E156D, C169S, I194T, L198M; p1: K4R, N9S; p17: L31M, A54S, A67T, K110R, A115V, N127Q; p2: S8T, G9V; p24: V11I, V26A, V83M, H87Q, I91M, Q112L; p6: P23-, S24P, P25S, -26L; p7: R11K, S12I, I13-; pro: R14G, G16E; rev: I18T, N32S, N50K, G104V; tat: N7K, K29R, P81S, K86E; vif: T20A, H30N, I31V, K37G, I66V, K78E, R93K, I128V, R132K, K157R, S186C; vpr: E13V, N48E, H77Q, I84M; vpu: I9V, V13I, F27Y, E62D"}}}]}]}]}]}]}, {"name": "NODE_0000521", "node_attrs": {"div": 0.05701, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A518G", "T992G", "G1077A", "A1278G", "A1279G", "G1493A", "-1775A", "T2017G", "G2042A", "A2056G", "A2332G", "A2362G", "T2365C", "A2380T", "G2422A", "A3034T", "A3046C", "A3167G", "A3229G", "G3391C", "A3535T", "T4216C", "A4306G", "T4679C", "C5028T", "A5036G", "C5038A", "A5046G", "C5091T", "G5094A", "G5099A", "T5281C", "T5314C", "G5359C", "G5382C", "G5415C", "A5462T", "T5491C", "A5545G", "G5548A", "C5556G", "A5566G", "G5575A", "G5668A", "A6326G", "C6790G", "-6833A", "A6936G", "-6959A", "-6961T", "T7666A", "A7701G", "C7843T", "C7935A", "A7936C", "A7937C", "G7992A", "T8113A", "A8184G", "C8223T", "A8455C", "A8458G", "G8499C", "T8558A", "G8666C", "A8717G", "A8762G", "G8774A", "G8784A", "T8786G", "A8793G", "G8795A", "A8798G", "A8804G", "C8831T", "C8832T", "G8834A", "G8846C", "A8873C", "T8883C", "A8885G", "A8886G", "G8888A", "A8893G", "G8894A", "T8947A", "T8993C", "G8994T", "A9005G", "T9012C", "T9014C", "C9023A", "T9051A", "A9060T"], "RT-p51": ["R358G"], "RT-p66": ["R358G", "Q480H"], "gp120": ["-105N", "I243V", "N312E", "E361G"], "gp41": ["D121E", "P211H", "N212H", "N239S", "R277S", "Q294R", "S302N", "T307I"], "nef": ["D38A", "K39R", "V148M", "K151A", "C163S", "E177D", "M182V", "K184R", "F202Y"], "p17": ["I61M"], "p24": ["H87Q", "G116R", "N183G"], "pro": ["V82I"], "rev": ["T14R", "K30P", "C89S"], "tat": ["Q13H", "T57G", "A58T", "N64D", "D67N", "Q76T"], "vif": ["T151K", "I154V", "V170T"], "vpr": ["R85P"]}, "labels": {"aa": "RT-p51: R358G; RT-p66: R358G, Q480H; gp120: -105N, I243V, N312E, E361G; gp41: D121E, P211H, N212H, N239S, R277S, Q294R, S302N, T307I; nef: D38A, K39R, V148M, K151A, C163S, E177D, M182V, K184R, F202Y; p17: I61M; p24: H87Q, G116R, N183G; pro: V82I; rev: T14R, K30P, C89S; tat: Q13H, T57G, A58T, N64D, D67N, Q76T; vif: T151K, I154V, V170T; vpr: R85P"}}, "children": [{"name": "results/subtype_trees/CRF25_cpx.nwk", "node_attrs": {"div": 0.08358, "clade_membership": {"value": "CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C155G", "C362T", "C426T", "C435T", "G452A", "T467C", "C493A", "A494T", "G608A", "G614T", "C636T", "T734C", "C767T", "A779C", "C1088T", "G1313A", "A1476G", "G1562A", "G1661A", "A1793G", "C1853A", "T1888C", "T1997A", "T2024C", "T2086A", "C2211A", "A2212T", "T2245A", "C2266T", "C2353T", "A2406G", "C2596T", "A2612G", "C2638T", "T2653C", "A2755G", "A2818C", "C2828A", "C2839A", "G2926A", "C2930T", "C2953A", "A3031C", "A3037G", "A3088G", "A3124G", "T3207C", "C3223T", "C3252T", "A3307C", "T3349C", "A3385G", "A3409G", "A3448G", "A3463G", "T3469C", "A3508G", "T3541C", "C3577T", "A3583G", "C3610T", "A3643G", "T3644A", "G3756A", "T3820C", "C3994T", "G3997A", "A4000G", "G4060A", "A4130C", 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D21E, N57G, -106V, -111N, -112N, -113N, -114N, -115S, I137L, I156L, T172A, Q259H, A288T, K309Q, E312K, K316E, -366S, -367W, -378N, -383N, -384D, -385T, V396I, A412P, N414V, T416R, K418T; gp41: N125D, A243P, A245V, C326G, L330Y, F340L; nef: E28A, Y102H, E176D, D177H; p17: T53N, E93D, N124S; p24: T210S; p6: P23-; p7: S4G; pro: L19I, C67S; rev: S54T, S61T, T62S, G99R; tat: K24N, Y32F, P81Q, K85E; vif: K50R, T155A; vpr: Y15N, E58V, I84T; vpu: A7S, V21I, R41Q, D44E, E48A, D60E, T61L, E62S, E63K, A65M, L67M, -68G, E70F, M71D", "clade": "CRF25_cpx"}}, "children": [{"name": "CRF25_cpx_NODE_0000001", "node_attrs": {"div": 0.08446000000000001, "clade_membership": {"value": "CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "C688A", "A1359T", "G1452A", "T1676C", "G1772A", "A1918G", "A1981G", "C2335A", "G2459A", "C2464G", "T2499C", "G2947A", "G3398A", "A3772G", "A3923C", "A4063G", "C4270T", "G4829A", "T5072C", "G5114A", "-5812G", "A5965C", "C6067T", "T6395A", "C6601T", "A6778C", 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"CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T91A", "C160T", "G162T", "T200C", "G206A", "T213C", "T214G", "-217A", "G251A", "G256A", "C267T", "-304A", "-305A", "T362G", "G367A", "G378A", "C379A", "C467T", "G480A", "A492G", "G498A", "T531C", "G534T", "G542C", "T560G", "A562G", "A571T", "T572C", "A592G", "A604T", "A609G", "C623T", "T662G", "G671A", "A699T", "A706G", "G712A", "A758G", "A791G", "G821A", "T824A", "C902T", "G998A", "T1001A", "A1022G", "A1025G", "C1137T", "G1192A", "C1295A", "C1330T", "C1342G", "A1343G", "A1364G", "G1404A", "G1449A", "C1492A", "A1586G", "G1589A", "G1592A", "A1601G", "C1693T", "C1767T", "A1775G", "G1781A", "T1783A", "A1784T", "T1785C", "A1786C", "C1788G", "C1789T", "T1790G", "T1791G", "T1792C", "G1793T", "C1826T", "G1901C", "A1907G", "G1998T", "T1999G", "G2156A", "G2173A", "A2176G", "T2209C", "A2215G", "T2315C", "C2333T", "G2509A", "T2632G", "C2635T", "C2653T", "G2683A", "G2686A", "G2714C", "A2773G", "G2830A", "C2845A", "A2881G", "A2884G", "C2909T", 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"T6145G", "A6172T", "A6173-", "A6179G", "G6180A", "T6181A", "C6190T", "-6201C", "-6202T", "-6203C", "-6204C", "-6205T", "-6206A", "-6207G", "-6208T", "-6209A", "-6210G", "-6211C", "A6212C", "T6213C", "A6214T", "-6217G", "-6220C", "-6225A", "A6249G", "A6251G", "T6252C", "G6267A", "G6269A", "A6273G", "G6277A", "A6279G", "A6281G", "G6292A", "C6298T", "A6303G", "G6314A", "T6315A", "A6320T", "T6321A", "A6324G", "T6325A", "G6329-", "A6330-", "T6331-", "A6332-", "T6334-", "A6335-", "G6336-", "T6337-", "G6345T", "G6346A", "G6451A", "T6454C", "G6463A", "G6466T", "C6482A", "A6490C", "A6514C", "C6559T", "G6566T", "A6595G", "A6602T", "T6631G", "G6638A", "A6639G", "G6640C", "T6652A", "A6689T", "A6691G", "G6693A", "A6695T", "A6773G", "G6774A", "A6776G", "C6777A", "A6786C", "T6793A", "C6807T", "A6818G", "C6824T", "A6825C", "-6830A", "-6831A", "-6832G", "-6835C", "A6836G", "A6840C", "A6848C", "C6849A", "T6875A", "A6899G", "A6900T", "G6906C", "T6932A", "G6940A", "-6956A", "-6958A", "C6964T", "-6965T", "-6966G", "-6967G", "-6968A", "-6969A", "-6970A", "-6971A", "-6972G", "-6973A", "-6975A", "-6976T", "-6977A", "-6978A", "-6979C", "-6980A", "-6981C", "-6982A", "C6984A", "-6989A", "-6990A", "-6991C", "-6992A", "-6994T", "-6995G", "-6996C", "-6997A", "-6998C", "-6999C", "-7000G", "-7005G", "-7006C", "-7008C", "A7065G", "G7076A", "C7077A", "C7087A", "A7106G", "C7107T", "C7127T", "T7150C", "C7170T", "C7174T", "G7182A", "G7190A", "G7256A", "C7264T", "A7296G", "G7343A", "C7499A", "G7508C", "G7519A", "A7552G", "T7567A", "T7630G", "T7642C", "A7687G", "A7689T", "C7723T", "G7753A", "G7754T", "C7801T", "G7831A", "G7841A", "C7906T", "T7913C", "A7918T", "G7942A", "A7943C", "G7944A", "G7964A", "G7980A", "A8002G", "A8006G", "A8008G", "C8009A", "G8017C", "T8037C", "A8055G", "C8092A", "C8103T", "A8104T", "A8188G", "A8193G", "A8222C", "A8233T", "G8234A", "T8235C", "A8236T", "C8296T", "G8304C", "A8308G", "G8387A", "G8404A", "A8405T", "A8425C", "T8456C", "G8458A", "A8469G", "C8480T", "-8490A", "C8499T", "G8516A", "G8561A", "T8568C", "G8590C", "C8606T", "T8646C", "C8651T", "C8688A", "T8708A", "G8738A", "G8822C", "C8844A", "T8847A", "A8859C", "T8870C", "G8875A", "A8876T", "A8912T", "C8913A", "A8915G", "A8916G", "G8917A", "A8920C", "A8922T", "A8947T", "C8948T", "C9017T", "C9073T", "T9095A"], "INT": ["E11D", "L68V", "G134D", "G163V", "I208M"], "RT-p51": ["V21I", "K174Q", "E207Q", "D250E", "P272S", "K281R", "A286T", "K311R", "L325I", "Y346H", "A376S", "T386V", "D404E"], "RT-p66": ["V21I", "K174Q", "E207Q", "D250E", "P272S", "K281R", "A286T", "K311R", "L325I", "Y346H", "A376S", "T386V", "D404E", "R461K", "H483Y", "S491T", "K558R"], "gp120": ["D19E", "K37S", "L97M", "-109E", "S115T", "-116T", "-117P", "-118S", "-119S", "-120P", "-121V", "-122N", "-123K", "-124E", "N132S", "I133A", "L137I", "R138K", "D139N", "K140R", "K142R", "K143E", "K150R", "V154K", "L156Y", "D157G", "N158D", "N160-", "N161-", "R164I", "T170A", "P210T", "K212N", "A238S", "T250S", "H259Q", "E262S", "I279L", "I281L", "D294A", "R307E", "T308D", "N311T", "A318V", "K319T", "R322G", "H324S", "N328A", "K329T", "I332H", "S335Q", "L341I", "N349V", "G351A", "S360T", "-370N", "-379N", "-380T", "-381A", "-382P", "D384G", "Q404R", "A408N", "R416K", "T418V", "-436E", "T439I", "G443E", "D446N", "V468I", "K472R", "E481G"], "gp41": ["A14T", "Q66K", "V69L", "D109E", "Q129L", "A151S", "M176I", "G180S", "R214Q", "E220G", "G221R", "G226D", "I235V", "V245A", "N251S", "F263L", "A267V", "K297R", "I307L", "V311T", "R334T"], "nef": ["R21N", "G29A", "R39K", "I43V", "P53S", "D54A", "G83A", "E108D", "H116N", "C169S", "M173L", "R178N", "R192E", "H193P", "I194L", "L198M", "Y202F"], "p17": ["S9R", "G11E", "A15K", "G49S", "N53D", "S66P", "A67S", "K69N", "K76R", "Y79F", "Y86C", "Q90L", "N109K", "T122S", "S126N"], "p2": ["G9S"], "p24": ["V86A", "R154K", "T200I", "A204G", "G225S"], "p6": ["P5L", "S24P", "P25S", "P30S", "L35H", "Y36P", "P37V", "L38A"], "p7": ["P9Q"], "pro": ["D35Q", "N37D", "S67M"], "rev": ["E32T", "R39K", "I52V", "H53R", "T54E", "E57Q", "H82N", "S86C", "T114A"], "tat": ["K19A", "A21P", "N24K", "F32Y", "Q35P", "R78N", "G79R"], "vif": ["E117G", "E134D"], "vpr": ["T84S"], "vpu": ["P3A", "Q41K", "L43F", "R47Q", "E58D", "M65L", "F70-", "D71-", "W77-", "V78D", "G79F", "N81D"]}, "labels": {"aa": "INT: E11D, L68V, G134D, G163V, I208M; RT-p51: V21I, K174Q, E207Q, D250E, P272S, K281R, A286T, K311R, L325I, Y346H, A376S, T386V, D404E; RT-p66: V21I, K174Q, E207Q, D250E, P272S, K281R, A286T, K311R, L325I, Y346H, A376S, T386V, D404E, R461K, H483Y, S491T, K558R; gp120: D19E, K37S, L97M, -109E, S115T, -116T, -117P, -118S, -119S, -120P, -121V, -122N, -123K, -124E, N132S, I133A, L137I, R138K, D139N, K140R, K142R, K143E, K150R, V154K, L156Y, D157G, N158D, N160-, N161-, R164I, T170A, P210T, K212N, A238S, T250S, H259Q, E262S, I279L, I281L, D294A, R307E, T308D, N311T, A318V, K319T, R322G, H324S, N328A, K329T, I332H, S335Q, L341I, N349V, G351A, S360T, -370N, -379N, -380T, -381A, -382P, D384G, Q404R, A408N, R416K, T418V, -436E, T439I, G443E, D446N, V468I, K472R, E481G; gp41: A14T, Q66K, V69L, D109E, Q129L, A151S, M176I, G180S, R214Q, E220G, G221R, G226D, I235V, V245A, N251S, F263L, A267V, K297R, I307L, V311T, R334T; nef: R21N, G29A, R39K, I43V, P53S, D54A, G83A, E108D, H116N, C169S, M173L, R178N, R192E, H193P, I194L, L198M, Y202F; p17: S9R, G11E, A15K, G49S, N53D, S66P, A67S, K69N, K76R, Y79F, Y86C, Q90L, N109K, T122S, S126N; p2: G9S; p24: V86A, R154K, T200I, A204G, G225S; p6: P5L, S24P, P25S, P30S, L35H, Y36P, P37V, L38A; p7: P9Q; pro: D35Q, N37D, S67M; rev: E32T, R39K, I52V, H53R, T54E, E57Q, H82N, S86C, T114A; tat: K19A, A21P, N24K, F32Y, Q35P, R78N, G79R; vif: E117G, E134D; vpr: T84S; vpu: P3A, Q41K, L43F, R47Q, E58D, M65L, F70-, D71-, W77-, V78D, G79F, N81D"}}}, {"name": "CRF25_cpx_NODE_0000002", "node_attrs": {"div": 0.0976, "clade_membership": {"value": "CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "A585G", "C586T", "C773T", "A914G", "C988T", "C1060A", "G1067A", "T1121C", "C1295T", "C1316T", "A1474G", "A1643G", "A1657G", "A1700G", "C1730T", "G1743A", "A1775C", "C1782T", "T1791A", "G1852A", "A1903C", "A1927G", "A2215T", "A2241G", "C2603A", "G2693A", "A2764G", "A2794G", "G2842A", "A3099G", "C3100A", "G3316A", "T3328C", "T3496G", "C3589T", "A3802G", "A4076C", "T4291G", "G4549A", "G4696A", "A4773G", "G4784A", "A4871G", "A4900G", "T5006G", "A5033T", "C5248T", "G5296A", "G5448T", "T5466C", "A5555C", "T5616C", "A5665G", "T5695A", "A5696T", "G5749A", "A5754G", "A5796T", "A5805G", "A5963G", "A5964C", "G6028A", "A6131C", "-6174A", "A6263T", "G6280A", "A6283G", "-6333A", "T6355C", "G6362A", "G6456A", "A6481G", "A6535G", "C6563T", "G6605A", "C6618A", "G6647A", "A6648C", "A6776C", "T6787C", "-6831A", "C6857A", "G6859T", "-6956A", "-6958A", "-6965A", "-6966C", "-6967T", "-6990G", "-6992A", "-7005A", "-7006T", "C7089A", "A7126G", "C7127A", "G7146T", "G7212A", "A7239G", "G7269A", "T7357G", "G7366A", "A7626T", "C7684T", "C7699T", "G7701A", "G7712C", "A7918G", "T7929A", "G8130A", "T8176C", "C8293T", "A8348G", "G8388A", "A8407G", "C8412A", "T8414A", "C8415G", "-8490A", "G8528A", "T8701A"], "INT": ["I101L"], "RT-p51": ["E40D", "K49R", "P170T", "A200T", "D335G"], "RT-p66": ["E40D", "K49R", "P170T", "A200T", "D335G"], "gp120": ["K37A", "G57E", "K93Q", "N105T", "-107N", "-109S", "R201K", "D251N", "E265T", "-372A", "P412Q", "L425I", "G431A", "S453N", "K462R"], "gp41": ["Y108F", "S133N", "E137Q", "L209H", "S277L"], "nef": ["V16I", "Q22R", "F120Y"], "p1": ["N9S"], "p17": ["T84V"], "p24": ["T110N"], "p6": ["A22T", "-23P", "E32D", "L38M"], "p7": ["K3R"], "tat": ["Q60P", "L74I"], "vif": ["R37K", "K63E", "Q105R", "N140K"], "vpu": ["I20V", "Y30I", "A48T", "K63T", "-69D"]}, "labels": {"aa": "INT: I101L; RT-p51: E40D, K49R, P170T, A200T, D335G; RT-p66: E40D, K49R, P170T, A200T, D335G; gp120: K37A, G57E, K93Q, N105T, -107N, -109S, R201K, D251N, E265T, -372A, P412Q, L425I, G431A, S453N, K462R; gp41: Y108F, S133N, E137Q, L209H, S277L; nef: V16I, Q22R, F120Y; p1: N9S; p17: T84V; p24: T110N; p6: A22T, -23P, E32D, L38M; p7: K3R; tat: Q60P, L74I; vif: R37K, K63E, Q105R, N140K; vpu: I20V, Y30I, A48T, K63T, -69D"}}, "children": [{"name": "AY371169", "node_attrs": {"div": 0.13337000000000002, "accession": "AY371169", "clade_membership": {"value": "CRF25_cpx"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "1918LE"}, "LANL_subtype": {"value": "CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A370G", "A398G", "A404G", "A411C", "A412G", "A418G", "G480A", "T485C", "C496G", "A516C", "A520G", "G524A", "C539T", "A605G", "G667A", "C679A", "G690A", "G755A", "A758G", "A759C", "T760C", "G761A", "G762A", "C779A", "T884C", "G908A", "A932G", "A978C", "A1025G", "G1031A", "T1040C", "A1046G", "G1090A", "G1109A", "C1292T", "A1343G", "T1385C", "T1422C", "T1427A", "T1505C", "G1508A", "G1553A", "T1559A", "G1592T", "A1642G", "T1646C", "T1682C", "T1722C", "A1733G", "C1768A", "G1846A", "C1888T", "C1903T", "C1979G", "C1985G", "T1987C", "A1988T", "G2056A", "G2065A", "T2080C", "T2269C", "A2290G", "C2296T", "G2392T", "T2393C", "G2406A", "A2414T", "A2455G", "A2545G", "G2583C", "A2601G", "A2611G", "C2615A", "G2707A", "C2720T", "C2740T", "G2821A", "G2830A", "A2839G", "C2909G", "A2918C", "A2925G", "C2985T", "G3029A", "C3067A", "A3080G", "C3095G", "A3097C", "G3124A", "A3164G", "G3169A", "A3200G", "A3204C", "A3217G", "A3230G", "C3266T", "A3268G", "C3322A", "C3391A", "A3456G", "C3787T", "T3793C", "C3908T", "A3979G", "T3991C", "T4039A", "A4112G", "T4140C", "T4147C", "G4228A", "G4262A", "G4263C", "T4441C", "C4471T", "A4495G", "A4567G", "A4725C", "G4766A", "G4856A", "A4862G", "G4981A", "A4988T", "A5038G", "A5057G", "A5090G", "A5112G", "G5128A", "T5194C", "T5197C", "G5212A", "A5233G", "C5237T", "A5278G", "C5333T", "C5356T", "C5412T", "C5415T", "G5427A", "A5431G", "A5432G", "G5437C", "T5462G", "C5478T", "C5491A", "C5496G", "A5535T", "G5556A", "G5557A", "T5562C", "T5602A", "C5614T", "C5627T", "C5660T", "T5687A", "A5689C", "A5727T", "G5775A", "C5833G", "C5869A", "G5893A", "G5915A", "C5923T", "A5926G", "G5955A", "T5956A", "G5972A", "T5980C", "C6026A", "A6065G", "C6165G", "G6170A", "-6175C", "A6177T", "T6178C", "G6180A", "T6184A", "T6187C", "A6195G", "T6196C", "A6200-", "A6212G", "G6215A", "T6216A", "-6217T", "-6220C", "A6222G", "-6225A", "C6241T", "A6251G", "A6320C", "A6338T", "G6339C", "T6340A", "C6347T", "A6350C", "A6354G", "G6368A", "C6412T", "G6466T", "A6476G", "A6489C", "A6525G", "G6526A", "A6532G", "C6613T", "A6623C", "G6640A", "C6648T", "A6649G", "G6693A", "G6706A", "A6716G", "T6733A", "G6767A", "C6776T", "A6801G", "C6807T", "A6809G", "-6830A", "-6832G", "-6835C", "A6840T", "A6848T", "C6850A", "T6856C", "A6858G", "A6881G", "G6894T", "T6916C", "G6935A", "A6974-", "A6985T", "-6989G", "-6991G", "-6994A", "-6995G", "-6996A", "-6997T", "-6998G", "-6999G", "-7000C", "-7008A", "C7020A", "A7032G", "A7101G", "G7102A", "A7106T", "T7146C", "A7152C", "T7153A", "A7154G", "A7155C", "G7160A", "A7162C", "C7170T", "C7171A", "C7264T", "A7279G", "A7282G", "G7307A", "T7309C", "T7323C", "A7339G", "G7343A", "T7403C", "A7427G", "T7432C", "T7627C", "G7628A", "A7666G", "A7690G", "A7713T", "A7726G", "T7774C", "A7782G", "G7790A", "A7791G", "G7868A", "C7874A", "A7931C", "A8011C", "G8019A", "A8029G", "C8044A", "A8152G", "G8159T", "T8167C", "T8171C", "T8172A", "T8182A", "G8234A", "T8235C", "A8240G", "G8264A", "T8268C", "T8291C", "G8292T", "A8297G", "A8303G", "G8304T", "G8365A", "T8366C", "C8369A", "A8370G", "A8372-", "G8373-", "T8374-", "A8409G", "C8411A", "A8412G", "T8440C", "T8450C", "G8458A", "C8471T", "A8489G", "T8492C", "C8503A", "C8510T", "G8570A", "G8588A", "T8636A", "A8643G", "A8647G", "C8648G", "A8652C", "A8657G", "C8666A", "G8682A", "A8726G"], "INT": ["I113V", "I122T", "G163T"], "RT-p51": ["R104K", "T107S", "S163T", "E169G", "P272A", "K275Q", "K277R", "A297V", "D324E", "I329V", "Q334D", "R357G", "T369A", "E370A", "S379G", "T386I", "D432E"], "RT-p66": ["R104K", "T107S", "S163T", "E169G", "P272A", "K275Q", "K277R", "A297V", "D324E", "I329V", "Q334D", "R357G", "T369A", "E370A", "S379G", "T386I", "D432E", "K454R"], "gp120": ["N5K", "E21K", "S34K", "V40I", "E57D", "L58I", "N71D", "V106N", "N111V", "N114R", "S115E", "I133V", "N158D", "-159D", "N161S", "I166L", "N167S", "A172T", "T208A", "K212T", "K224R", "T255N", "I257L", "T265M", "T288A", "V305I", "T308S", "E316G", "A318V", "K319A", "N328T", "K329I", "I332S", "I343V", "S347I", "G361S", "-370S", "-379G", "-380T", "-381D", "-382G", "T385N", "P389Q", "K393R", "T418S", "-433T", "N434A", "-436N", "N437T", "T439I"], "gp41": ["V2I", "V7A", "A14T", "S42G", "D109N", "Q137L", "N160S", "D163S", "A189T", "L191I", "T210P", "E220G", "S239N", "D247E", "G286W", "L290Q", "V311T", "N313D", "V321I", "V322A", "Y330L", "I332V", "R334V"], "nef": ["S8N", "S9R", "I10V", "V11-", "A28E", "V33A", "R39K", "D98E", "I101V", "H102W", "K104Q", "V114I"], "p1": ["K4R"], "p17": ["V7I", "K12R", "K26R", "K28R", "G49S", "A54G", "M61L", "E62G", "S111N", "T115K", "A119T"], "p24": ["M10P", "V11I", "I83L", "S120N"], "p6": ["F15L", "P30Q"], "p7": ["E42D"], "pro": ["Q61E", "L63V", "I64L", "M89I"], "rev": ["D7V", "R14Q", "V16A", "Y28S", "I55L", "T61A", "I102V", "G104V", "S107P", "V108A", "S112T"], "tat": ["K19G", "A21P", "K29R", "L39I", "N40K", "R53S", "G61S"], "vif": ["N47H", "R132K", "E134D", "K151R", "K176E", "R181K"], "vpr": ["Q3R", "H45Y", "T84I"], "vpu": ["P3S", "S7F", "A18V", "F27Y", "I28L", "E40D", "-72A"]}, "labels": {"aa": "INT: I113V, I122T, G163T; RT-p51: R104K, T107S, S163T, E169G, P272A, K275Q, K277R, A297V, D324E, I329V, Q334D, R357G, T369A, E370A, S379G, T386I, D432E; RT-p66: R104K, T107S, S163T, E169G, P272A, K275Q, K277R, A297V, D324E, I329V, Q334D, R357G, T369A, E370A, S379G, T386I, D432E, K454R; gp120: N5K, E21K, S34K, V40I, E57D, L58I, N71D, V106N, N111V, N114R, S115E, I133V, N158D, -159D, N161S, I166L, N167S, A172T, T208A, K212T, K224R, T255N, I257L, T265M, T288A, V305I, T308S, E316G, A318V, K319A, N328T, K329I, I332S, I343V, S347I, G361S, -370S, -379G, -380T, -381D, -382G, T385N, P389Q, K393R, T418S, -433T, N434A, -436N, N437T, T439I; gp41: V2I, V7A, A14T, S42G, D109N, Q137L, N160S, D163S, A189T, L191I, T210P, E220G, S239N, D247E, G286W, L290Q, V311T, N313D, V321I, V322A, Y330L, I332V, R334V; nef: S8N, S9R, I10V, V11-, A28E, V33A, R39K, D98E, I101V, H102W, K104Q, V114I; p1: K4R; p17: V7I, K12R, K26R, K28R, G49S, A54G, M61L, E62G, S111N, T115K, A119T; p24: M10P, V11I, I83L, S120N; p6: F15L, P30Q; p7: E42D; pro: Q61E, L63V, I64L, M89I; rev: D7V, R14Q, V16A, Y28S, I55L, T61A, I102V, G104V, S107P, V108A, S112T; tat: K19G, A21P, K29R, L39I, N40K, R53S, G61S; vif: N47H, R132K, E134D, K151R, K176E, R181K; vpr: Q3R, H45Y, T84I; vpu: P3S, S7F, A18V, F27Y, I28L, E40D, -72A"}}}, {"name": "DQ826726", "node_attrs": {"div": 0.12637, "accession": "DQ826726", "clade_membership": {"value": "CRF25_cpx"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "101BA"}, "LANL_subtype": {"value": "CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A356G", "T426C", "T435C", "A452G", "A464G", "C482T", "A493C", "T494A", "G495C", "A509G", "G519A", "A521C", "G552C", "A576G", "G579A", "A604T", "G615A", "A706G", "A716G", "G771T", "A774C", "A1205G", "C1211T", "T1220C", "G1247A", "C1292A", "A1379C", "C1444T", "G1458A", "G1495A", "G1673A", "A1712T", "A1771C", "G1781A", "G1846T", "A1849G", "T1895C", "C1960T", "G1972A", "A1990G", "G2068A", "A2086G", "T2092C", "G2134A", "G2182A", "T2206C", "G2248A", "C2281T", "A2293G", "G2332A", "A2437G", "G2473A", "A2510G", "G2539A", "G2578A", "A2710G", "T2723C", "C2818A", "G2830T", "A2839C", "G2914A", "C2968T", "C3067T", "G3221T", "C3222G", "T3252C", "T3253C", "A3334T", "G3340A", "A3532G", "C3542T", "G3595A", "A3601G", "G3631C", "C3649T", "A3756G", "T3779C", "C3823T", "A4111G", "T4321C", "A4498G", "G4582A", "G4616A", "C4645A", "T4780C", "T4805C", "A4865G", "C4890T", "T4932A", "A4937C", "A4966G", "C4976T", "G4982T", "A5015C", "G5036A", "C5162T", "G5167A", "T5170G", "G5173A", "G5176A", "G5185A", "A5186C", "A5200G", "C5227A", "C5314A", "C5351T", "G5403A", "C5415A", "A5432C", "C5451T", "T5454C", "G5463A", "T5471G", "T5472G", "G5482T", "T5484A", "A5493G", "G5545A", "T5568C", "A5575T", "A5586G", "C5627G", "A5668G", "G5699A", "A5739C", "C5763T", "C5834A", "T5844G", "G5917A", "C5922T", "T5956C", "A5957C", "C5989T", "A6009G", "T6025G", "G6029A", "A6030C", "A6164G", "C6165T", "A6168C", "G6170T", "-6175T", "A6176T", "A6177G", "C6183A", "A6186G", "T6187A", "A6189T", "T6193C", "C6198G", "-6201A", "-6202C", "-6203T", "-6204G", "-6205T", "-6206A", "-6207G", "-6208A", "-6209A", "-6210C", "-6211A", "-6217A", "A6218C", "A6219T", "-6220G", "G6224A", "-6225G", "G6227A", "A6228C", "G6267A", "G6274A", "A6311G", "T6325G", "A6330G", "G6336A", "T6541A", "C6548T", "T6551C", "A6602T", "A6618G", "C6632T", "T6641A", "C6660T", "A6689G", "C6777A", "C6778T", "T6793G", "C6810A", "A6820C", "A6823G", "T6827-", "-6830G", "-6832A", "A6833C", "-6835T", "A6838C", "A6840G", "A6842-", "C6843-", "C6849T", "A6854G", "A6855C", "T6860C", "C6861A", "T6875G", "G6936C", "A6947G", "A6962G", "G6963A", "-6968G", "-6969C", "-6970T", "-6971A", "-6972A", "-6973T", "-6975A", "-6976T", "-6977G", "-6978G", "-6979G", "-6980A", "-6981C", "-6982A", "C6984A", "A6987C", "-6989A", "-6991C", "C6993A", "-6994T", "-7008C", "A7040G", "G7102C", "A7148G", "A7149G", "A7151G", "A7152G", "A7155G", "T7156C", "C7164A", "C7171T", "G7288A", "C7313A", "A7552G", "G7633T", "G7640A", "C7645A", "G7658C", "A7689T", "A7700G", "C7801G", "G7871T", "G7962A", "A7996C", "A8006G", "A8008C", "C8009A", "C8095A", "G8184A", "C8213G", "T8265G", "G8267A", "G8292A", "A8294C", "A8323C", "A8341G", "A8402G", "A8409C", "C8411T", "G8479A", "C8480T", "C8499T", "A8604G", "T8646C", "A8656G", "C8684T", "T8720C", "C8741A", "T8751C", "T8770A", "G8799A", "G8818A", "G8822T", "T8831C", "G8864C", "A8869C", "C8883T", "T8935A", "A8947G", "C8948G", "G8991A", "A9023T", "C9078T"], "INT": ["V281M"], "RT-p51": ["T139A", "K174Q", "K245N", "E248D", "N312D", "A376C", "E413D"], "RT-p66": ["T139A", "K174Q", "K245N", "E248D", "N312D", "A376C", "E413D", "H483Y", "K512N", "N554S"], "gp120": ["T23I", "T35P", "N52S", "E59T", "T104V", "V106L", "N108C", "T110N", "N111R", "N112I", "-116S", "-117I", "R138K", "I153V", "L156I", "D157E", "-159S", "N161D", "N204K", "T250S", "T255S", "L260F", "S263T", "T269I", "I279V", "H280R", "T308H", "R322S", "F325-", "T330-", "N334A", "S335N", "S336H", "L341V", "G361A", "S365G", "-370D", "-373N", "-374T", "-375E", "-376T", "-377S", "-379N", "N383-", "I396V", "R416N", "A431V", "N432G", "-433G", "N434S", "-436E"], "gp41": ["L4M", "E110D", "D113N", "N114K", "E119Q", "Q129L", "N133D", "N166K", "V190L", "R231S", "I235V", "R294Q", "L304V", "V321G", "V322I", "N331H", "L340F"], "nef": ["I20M", "P25T", "G29E", "S46N", "P53S", "D54A", "S88G", "K105R", "E108D", "F143Y", "V153I", "G159E", "I168L", "E174D", "D176A", "L198K", "Y202W"], "p17": ["N53T", "A54P", "E62N", "E73Q", "T81A", "V82I", "Q90L", "V94I"], "p2": ["A7V", "A12T"], "p24": ["A14S", "I15L", "D187E"], "p6": ["K31T"], "p7": ["R10K"], "pro": ["I64M"], "rev": ["I18T", "K20N", "Q24R", "H53R", "T54Q", "L83I"], "tat": ["H13Q", "K19T", "K29I", "F32W", "V36L", "G57R", "N67Y", "E85K"], "vif": ["T20K", "V65A", "S116T", "E117D", "H127R", "R132S"], "vpr": ["N28H"], "vpu": ["S7C", "I21V", "R31K", "E44D", "-72H"]}, "labels": {"aa": "INT: V281M; RT-p51: T139A, K174Q, K245N, E248D, N312D, A376C, E413D; RT-p66: T139A, K174Q, K245N, E248D, N312D, A376C, E413D, H483Y, K512N, N554S; gp120: T23I, T35P, N52S, E59T, T104V, V106L, N108C, T110N, N111R, N112I, -116S, -117I, R138K, I153V, L156I, D157E, -159S, N161D, N204K, T250S, T255S, L260F, S263T, T269I, I279V, H280R, T308H, R322S, F325-, T330-, N334A, S335N, S336H, L341V, G361A, S365G, -370D, -373N, -374T, -375E, -376T, -377S, -379N, N383-, I396V, R416N, A431V, N432G, -433G, N434S, -436E; gp41: L4M, E110D, D113N, N114K, E119Q, Q129L, N133D, N166K, V190L, R231S, I235V, R294Q, L304V, V321G, V322I, N331H, L340F; nef: I20M, P25T, G29E, S46N, P53S, D54A, S88G, K105R, E108D, F143Y, V153I, G159E, I168L, E174D, D176A, L198K, Y202W; p17: N53T, A54P, E62N, E73Q, T81A, V82I, Q90L, V94I; p2: A7V, A12T; p24: A14S, I15L, D187E; p6: K31T; p7: R10K; pro: I64M; rev: I18T, K20N, Q24R, H53R, T54Q, L83I; tat: H13Q, K19T, K29I, F32W, V36L, G57R, N67Y, E85K; vif: T20K, V65A, S116T, E117D, H127R, R132S; vpr: N28H; vpu: S7C, I21V, R31K, E44D, -72H"}}}]}]}, {"name": "CRF25_cpx_NODE_0000003", "node_attrs": {"div": 0.08941, "clade_membership": {"value": "CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A302T", "A1733G", "A1832G", "G4677A", "A4861G", "A4862G", "A4911C", "C4914T", "T5062C", "C5655T", "-6202T", "-6203G", "-6204T", "G6224T", "A6226G", "A6229T", "A6232G", "A6263C", "G6326A", "-6333A", "G6628A", "A6648G", "T6769C", "-6972G", "-6975C", "-6976A", "-6978A", "-6979A", "-6980G", "G6983T", "A8370G", "C8494A", "T8567A", "A8794C"], "gp120": ["-107T", "N113S", "E125-", "I126-", "-159S", "N204M", "E265G", "-382S", "N437S"], "nef": ["I10V"], "p24": ["V86P"], "tat": ["K29V"], "vif": ["V31I", "K92R", "M109L", "H110Y"], "vpu": ["-69N"]}, "labels": {"aa": "gp120: -107T, N113S, E125-, I126-, -159S, N204M, E265G, -382S, N437S; nef: I10V; p24: V86P; tat: K29V; vif: V31I, K92R, M109L, H110Y; vpu: -69N"}}, "children": [{"name": "KY392772", "node_attrs": {"div": 0.12884, "accession": "KY392772", "clade_membership": {"value": "CRF25_cpx"}, "country": {"value": "CD"}, "date": {"value": 2002.0}, "Strain_name": {"value": "CG_0379_02V_NGSID7"}, "LANL_subtype": {"value": "CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G155C", "-166A", "-217T", "A303T", "G354A", "T396C", "A417C", "T479C", "A493G", "T506C", "A530G", "A619G", "G653A", "A678G", "A785G", "A791G", "A806G", "G821A", "T824C", "T890C", "A978C", "A980G", "G987C", "A1025C", "C1060A", "C1061T", "A1077G", "G1078C", "C1103A", "G1192A", "C1292T", "G1298A", "A1313C", "C1330A", "A1370G", "G1388A", "G1394A", "T1421G", "C1444T", "G1458A", "G1476A", "A1501C", "A1565G", "A1588G", "T1682C", "C1688A", "C1756T", "G1766A", "C1768A", "G1773A", "A1776G", "G1793A", "C1833A", "A1841G", "T1854A", "C1873T", "A1903C", "A2122G", "T2209C", "A2245T", "C2281T", "T2299C", "G2387T", "G2456C", "A2498G", "G2539A", "G2567T", "G2704A", "A2715G", "T2723C", "C2909G", "T2935C", "A2937G", "G2998A", "A3019G", "C3031A", "G3088A", "A3103G", "C3222T", "T3253G", "C3307T", "T3368C", "G3379A", "T3399A", "C3405T", "T3433A", "A3442G", "C3475T", "A3502C", "T3610C", "G3664A", "G3694A", "G3808T", "G3816A", "T3856C", "G3907A", "T3946C", "A3961G", "T3991C", "A3997G", "T4039C", "G4046A", "A4060G", "C4204T", "T4234C", "T4428C", "A4555G", "C4645A", "C4679A", "A4692G", "A4693G", "C4703T", "C4715T", "C4761T", "G4766A", "T4769G", "A4774G", "A4790C", "A4804T", "T4932A", "A4937C", "G4949A", "T4969G", "C4976T", "A5007C", "A5038G", "G5049A", "C5050A", "C5168A", "T5203C", "T5228C", "C5237T", "C5280G", "A5282C", "G5363A", "C5382G", "A5433T", "G5437C", "G5448T", "T5457C", "A5461G", "C5478T", "G5482C", "T5483G", "C5491A", "T5492C", "A5495G", "C5552A", "A5574G", "A5575G", "C5614G", "A5622G", "A5664T", "G5699A", "A5739T", "C5750A", "A5784G", "C5795A", "A5806T", "-5824A", "A5865G", "C5866A", "C5878T", "A5907G", "G5917C", "C5924T", "G5948T", "T5980A", "A6024C", "T6025C", "C6026A", "T6046C", "C6115T", "A6132G", "A6137T", "A6158C", "C6160T", "A6167G", "T6169G", "-6174A", "-6175G", "A6179G", "C6190T", "A6194G", "-6201A", "-6205A", "-6206A", "-6207G", "-6208T", "-6209A", "-6210A", "-6211T", "T6213G", "A6214T", "G6215A", "T6216G", "-6217T", "A6218C", "-6220A", "A6221G", "A6223C", "-6225G", "G6227C", "A6228C", "C6241T", "A6281C", "A6316G", "C6318A", "A6320C", "G6323A", "T6340A", "C6363T", "G6368A", "C6370T", "A6371G", "A6450G", "A6465T", "C6482A", "C6511T", "A6520G", "A6535G", "A6578G", "G6605A", "A6609G", "C6612A", "A6669G", "A6684G", "G6693A", "A6716G", "G6732A", "A6734G", "T6735A", "C6752A", "A6754G", "A6765C", "G6771A", "T6772C", "A6778T", "C6779G", "A6780C", "G6790C", "A6799T", "G6800A", "C6810T", "T6815C", "A6818G", "G6819A", "A6820G", "A6825T", "C6826G", "-6835T", "A6848G", "C6849T", "C6857T", "A6858C", "G6859A", "C6862T", "T6863G", "A6871G", "C6925T", "A6931C", "T6938C", "T6949C", "G6951C", "-6956G", "-6957T", "-6958C", "T6961G", "G6963A", "C6964T", "-6971G", "-6973T", "-6977G", "-6981G", "-6982A", "C6984T", "-6989G", "-6990A", "-6991C", "-6992A", "-6994A", "-6995G", "-6996A", "-6997A", "-6998T", "-6999C", "-7000A", "-7005G", "-7006C", "-7008C", "C7018T", "C7020A", "G7021A", "A7033G", "G7056A", "T7095A", "A7101G", "C7107A", "A7108C", "A7138G", "G7146A", "A7147T", "T7150A", "T7153C", "A7155C", "A7158G", "T7165C", "G7166-", "A7167-", "A7168-", "A7169-", "C7170-", "C7171-", "A7189G", "G7225A", "A7237C", "C7264T", "G7366A", "T7466C", "A7504G", "G7519A", "A7540G", "C7544G", "A7641G", "G7669A", "A7700G", "A7706C", "G7962A", "C7984A", "A7992G", "G7997A", "G8001A", "A8008T", "G8019A", "C8103T", "G8105A", "A8113T", "A8152G", "T8171G", "T8172C", "A8222G", "G8264A", "A8275G", "C8293G", "A8294C", "G8317A", "A8342C", "G8354A", "A8364T", "G8365C", "C8369T", "G8388A", "A8407G", "T8440C", "-8490G", "T8492A", "C8503A", "C8510T", "G8516A", "G8534A", "C8552T", "G8561A", "A8567G", "T8568C", "T8646C", "A8656G", "C8666T", "G8678A", "C8688A", "T8701A", "A8739G", "T8770A", "A8783T", "A8812C", "A8837G", "G8852A", "A8859C", "T8867C", "A8869C", "G8875A", "G8886A", "T8904A", "C8905G", "A8916G", "G8917A", "A8922G", "G8931A", "C8992T", "C9018A", "A9042G"], "INT": ["E11D", "R14K", "A91T", "I218T"], "RT-p51": ["A98S", "D121H", "T135V", "A158S", "K174Q", "E207G", "P272A", "K281R", "N312E", "A376V", "T386M", "I435E", "A437V"], "RT-p66": ["A98S", "D121H", "I135V", "A158S", "K174Q", "E207G", "P272A", "K281R", "N312E", "A376V", "T386M", "I435E", "A437V"], "gp120": ["D4G", "K18R", "E21D", "A32S", "G57A", "L58M", "K93R", "T95S", "N102H", "N105E", "-109D", "N112V", "-116S", "-117Q", "-118D", "-119W", "-120P", "-121M", "K143Q", "P155Q", "D157N", "N160D", "T170V", "A172T", "I173V", "K199R", "P210T", "I242V", "D251N", "N252S", "A253D", "N272S", "K277R", "T288A", "A291T", "T292D", "G293D", "D294V", "Q300K", "N304T", "S306N", "Q309A", "K312N", "Q315H", "E316K", "K319I", "R322E", "H324L", "I332V", "S337A", "S366T", "N369-", "-376G", "-377L", "-379D", "-380T", "-381E", "D384G", "P389Q", "R401K", "V414E", "T418N", "G431D", "N432K", "N434-", "-436T", "K472R"], "gp41": ["L81V", "D113G", "S133G", "I135L", "D230G", "D232N", "R233K", "S239N", "A267V", "A268T", "L290A", "I307V", "V321I", "Y330W", "N331H"], "nef": ["V16I", "Q22R", "A28E", "V33A", "T51N", "K105R", "E108D", "H116N", "F120Y", "I133V", "F143Y", "N157T", "I168L", "M173L", "D176A", "R178K", "V182I", "R192E", "I194V", "E197K"], "p17": ["V7I", "K28Q", "N53S", "K95R", "T115A", "S124K"], "p2": ["A7V", "A12T"], "p24": ["I83L", "E98D", "T110N", "R116A", "R154K", "T200N", "S210T"], "p6": ["N3K", "S24P", "P25S", "-26L", "P30Q", "E32K", "K33E", "Q52K"], "p7": ["G4S", "N12T", "K41R"], "pro": ["T12E", "I15V", "I19K"], "rev": ["L13I", "K20R", "R50K", "T54S", "S86N", "S89C", "I102V", "V108G"], "tat": ["D2E", "K19N", "A21P", "V36R", "L39T", "N40S", "P59H", "N67D", "E85K"], "vif": ["T20K", "K36G", "D61E", "K63R", "H73L", "S116T", "E117D", "I128R", "K141Q", "K151R", "A155N"], "vpr": ["L22I", "H45Y", "A59G", "I60L"], "vpu": ["P3A", "R31K", "E44D", "A48E", "M67L"]}, "labels": {"aa": "INT: E11D, R14K, A91T, I218T; RT-p51: A98S, D121H, T135V, A158S, K174Q, E207G, P272A, K281R, N312E, A376V, T386M, I435E, A437V; RT-p66: A98S, D121H, I135V, A158S, K174Q, E207G, P272A, K281R, N312E, A376V, T386M, I435E, A437V; gp120: D4G, K18R, E21D, A32S, G57A, L58M, K93R, T95S, N102H, N105E, -109D, N112V, -116S, -117Q, -118D, -119W, -120P, -121M, K143Q, P155Q, D157N, N160D, T170V, A172T, I173V, K199R, P210T, I242V, D251N, N252S, A253D, N272S, K277R, T288A, A291T, T292D, G293D, D294V, Q300K, N304T, S306N, Q309A, K312N, Q315H, E316K, K319I, R322E, H324L, I332V, S337A, S366T, N369-, -376G, -377L, -379D, -380T, -381E, D384G, P389Q, R401K, V414E, T418N, G431D, N432K, N434-, -436T, K472R; gp41: L81V, D113G, S133G, I135L, D230G, D232N, R233K, S239N, A267V, A268T, L290A, I307V, V321I, Y330W, N331H; nef: V16I, Q22R, A28E, V33A, T51N, K105R, E108D, H116N, F120Y, I133V, F143Y, N157T, I168L, M173L, D176A, R178K, V182I, R192E, I194V, E197K; p17: V7I, K28Q, N53S, K95R, T115A, S124K; p2: A7V, A12T; p24: I83L, E98D, T110N, R116A, R154K, T200N, S210T; p6: N3K, S24P, P25S, -26L, P30Q, E32K, K33E, Q52K; p7: G4S, N12T, K41R; pro: T12E, I15V, I19K; rev: L13I, K20R, R50K, T54S, S86N, S89C, I102V, V108G; tat: D2E, K19N, A21P, V36R, L39T, N40S, P59H, N67D, E85K; vif: T20K, K36G, D61E, K63R, H73L, S116T, E117D, I128R, K141Q, K151R, A155N; vpr: L22I, H45Y, A59G, I60L; vpu: P3A, R31K, E44D, A48E, M67L"}}}, {"name": "CRF25_cpx_NODE_0000004", "node_attrs": {"div": 0.10575000000000001, "clade_membership": {"value": "CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A159-", "C160-", "A286G", "-304A", "A398G", "G424A", "T435A", "C668T", "C679A", "G693A", "C694A", "T830C", "G968A", "G1064A", "T1088A", "C1103T", "T1325C", "G1664A", "T1679C", "G1691A", "A1712T", "G1794A", "A1849G", "A1908G", "A1990G", "G2056A", "T2087C", "G2182A", "A2293G", "A2498C", "C2533T", "T2581C", "C2615A", "A2710G", "G2951A", "G3029A", "C3067A", "A3080G", "A3145G", "A3162G", "C3449T", "C3545T", "G3631A", "A3866G", "A3880G", "A3890T", "A3979G", "T4144C", "T4606G", "G4765A", "A4773G", "A4778G", "A4865G", "G4888A", "T4967G", "C4976G", "A4993C", "T5194C", "T5221C", "A5324G", "C5382T", "G5427A", "A5444G", "T5602A", "G5640A", "C5641T", "A5644G", "G5741A", "A5746G", "G5747C", "G5748A", "C5869A", "G5893A", "G6079A", "C6097T", "C6183A", "A6186C", "T6187A", "A6189C", "T6193C", "-6220G", "A6253G", "G6277A", "C6289T", "G6362A", "T6421C", "T6438A", "G6463A", "C6483T", "C6618A", "C6632T", "A6689G", "A6742G", "C6810A", "C6824T", "G6935C", "A6962G", "-6965A", "-6967T", "-6968G", "-6970C", "-6971A", "-6973C", "-6977C", "-6981A", "-6982G", "T6988A", "A7046C", "C7127A", "T7144A", "A7162T", "G7256A", "G7269A", "T7337C", "C7605G", "G7628A", "C7684T", "G7720A", "C7801A", "T7888A", "A7918C", "A8011C", "T8032A", "T8035C", "G8036T", "C8044G", "G8050C", "G8159T", "C8213T", "T8223C", "T8256G", "G8276A", "C8277T", "G8349A", "G8350A", "T8355G", "G8368A", "C8369A", "T8374C", "G8376A", "G8377A", "A8402G", "G8487-", "C8488-", "A8489-", "C8666G", "T8711C", "T8832C", "G8991A", "A9023T"], "INT": ["I31V", "S39C"], "RT-p51": ["T135L", "A286T", "D324E", "I329V", "K356R"], "RT-p66": ["I135L", "A286T", "D324E", "I329V", "K356R"], "gp120": ["N5K", "S115A", "F195Y", "P210L", "T255N", "I279V", "H280R", "H324Y", "I332T", "G361H", "N378-", "M398L", "L425I", "V468I"], "gp41": ["T101S", "D109N", "N166K", "N195K", "E220G", "V245F", "D247E", "G286W", "L304F", "I307T", "V318G", "A325I"], "nef": ["G3N", "W5G", "S9K", "V11A", "G12K", "G29E", "A49T", "A50-", "T51-", "H102Y"], "p17": ["R30K", "L34I", "T115K", "A120N"], "p6": ["A39T"], "pro": ["D35E", "N37S", "I64M"], "rev": ["I55L", "S62T", "C63L", "R66G", "A68P", "G104V"], "tat": ["N23S", "N24S"], "vif": ["V7G", "G60E", "G101E", "H127Q", "S130R", "Q136P"], "vpr": ["A93S"], "vpu": ["I13V", "R45K", "R47A"]}, "labels": {"aa": "INT: I31V, S39C; RT-p51: T135L, A286T, D324E, I329V, K356R; RT-p66: I135L, A286T, D324E, I329V, K356R; gp120: N5K, S115A, F195Y, P210L, T255N, I279V, H280R, H324Y, I332T, G361H, N378-, M398L, L425I, V468I; gp41: T101S, D109N, N166K, N195K, E220G, V245F, D247E, G286W, L304F, I307T, V318G, A325I; nef: G3N, W5G, S9K, V11A, G12K, G29E, A49T, A50-, T51-, H102Y; p17: R30K, L34I, T115K, A120N; p6: A39T; pro: D35E, N37S, I64M; rev: I55L, S62T, C63L, R66G, A68P, G104V; tat: N23S, N24S; vif: V7G, G60E, G101E, H127Q, S130R, Q136P; vpr: A93S; vpu: I13V, R45K, R47A"}}, "children": [{"name": "EU697908", "node_attrs": {"div": 0.13160000000000002, "accession": "EU697908", "clade_membership": {"value": "CRF25_cpx"}, "country": {"value": "SA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "J11451"}, "LANL_subtype": {"value": "CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C48T", "A161-", "T163A", "-166G", "-167T", "T213C", "T214G", "-217A", "G365A", "A368G", "G378A", "A386G", "T426C", "G480A", "A571T", "A585G", "C586T", "G690A", "G821A", "A914G", "C936T", "G956T", "G987C", "A1025C", "T1052C", "G1139A", "T1229C", "G1247A", "G1278A", "G1279A", "C1292A", "C1316T", "C1330A", "A1359T", "A1361C", "G1394A", "G1404A", "G1495A", "A1567G", "A1586G", "A1701T", "A2059G", "A2160G", "A2191G", "T2209C", "A2215G", "T2299C", "A2368G", "G2406A", "G2462A", "C2498T", "A2626C", "T2723C", "C2749T", "C2848T", "A2929G", "A2937G", "C2985A", "G2998A", "T3121C", "G3221T", "T3399C", "A3456G", "T3757G", "C3995T", "G4354A", "A4543C", "G4573A", "T4656C", "T4678G", "C4679A", "C4724T", "G4767A", "A4774T", "A4820C", "T4827C", "A4850G", "A4874G", "T4889G", "C4890T", "A4900G", "T4907C", "C4911T", "A4956T", "G4981A", "A5004T", "A5005G", "G5030A", "A5054G", "G5086A", "A5191G", "C5214T", "T5313C", "C5333T", "A5362G", "T5391C", "A5447G", "G5448A", "G5463A", "T5472G", "A5494C", "C5496A", "G5557A", "G5561A", "A5576T", "T5604G", "C5614T", "T5617C", "A5668G", "A5739G", "C5769T", "A5800C", "A5805G", "-5824A", "T5844G", "C5920T", "C5922T", "A5950C", "A5954G", "A5964G", "C5974T", "G6023A", "T6025G", "A6044G", "T6046A", "A6073G", "G6149A", "A6158C", "C6160A", "T6169C", "G6170A", "-6174C", "-6175C", "C6198G", "-6201C", "-6205G", "-6211G", "-6217G", "A6218T", "A6223-", "T6224-", "G6226-", "C6238T", "T6252C", "C6256T", "A6279G", "A6281G", "A6282G", "C6293T", "T6321A", "T6322A", "A6324G", "A6327G", "T6340G", "C6347T", "A6394G", "A6465T", "T6499C", "A6520G", "C6545A", "G6550A", "T6551C", "G6577A", "C6601T", "A6628T", "T6631A", "T6637C", "G6638A", "T6641G", "G6648T", "A6668G", "A6669C", "A6734G", "T6735A", "T6745C", "G6767A", "A6776G", "A6823T", "A6833-", "A6834-", "C6849A", "A6855C", "A6868G", "A6881C", "T6892C", "T6895C", "T6922C", "G6936A", "-6956G", "-6957A", "-6958A", "-6966T", "-6969C", "A6986C", "C6993-", "-6995G", "-6996A", "-6997G", "-6998T", "-6999C", "-7000A", "-7005A", "-7006C", "-7008A", "C7020A", "A7045G", "C7089A", "A7099C", "A7101G", "A7106T", "A7138G", "A7152C", "T7153C", "A7154T", "A7155C", "A7163G", "C7170T", "T7226C", "G7369A", "T7466C", "A7525G", "T7565A", "G7658C", "G7717A", "G7790A", "A7791G", "A7807G", "A7817C", "C7874T", "G7965A", "A7992G", "A8069T", "C8095A", "G8130A", "A8143G", "T8176C", "G8184A", "A8252T", "C8320A", "G8330C", "C8331T", "G8357A", "T8431C", "A8486C", "C8491-", "T8492-", "T8498C", "G8508A", "G8579A", "T8582C", "G8590C", "A8652G", "A8662G", "C8747T", "A8784C", "T8789A", "C8844A", "A8879T", "A8922C", "G8936A", "C8957T", "A9026G", "G9030T"], "INT": ["E256D"], "RT-p51": ["K22R", "R104K", "D123N", "E177D", "K281R", "A297E", "A376S", "T386I", "I435A"], "RT-p66": ["K22R", "R104K", "D123N", "E177D", "K281R", "A297E", "A376S", "T386I", "I435A", "K454R"], "gp120": ["T23I", "S34G", "K37R", "G57K", "N64E", "V99I", "N102Q", "V106I", "-109T", "N114T", "A115V", "I133T", "K142R", "K143G", "L147F", "D157K", "N158G", "N160D", "L231M", "H259Q", "L260F", "E262K", "S263A", "G265V", "N272A", "V305I", "T308A", "K323N", "N327-", "T332N", "N334T", "S335Q", "I343L", "-368E", "-370G", "-371I", "-372A", "-373S", "-374T", "-375Q", "-376E", "-377S", "-378Q", "-381E", "T385N", "P389Q", "P412Q", "T418S", "-433T", "N434S", "-436D", "S437A", "T439I", "Y458H"], "gp41": ["S88T", "E119Q", "D163S", "K172Q", "L191F", "G221E", "D230G", "S256C", "S277L", "R294Q", "R317W", "Y330C", "A343L"], "nef": ["I20M", "V30G", "T49N", "D54A", "A56T", "M79I", "G83A", "K104E", "Q107R", "M148L", "D149E", "E179D", "I194L"], "p17": ["A15T", "G49S", "Y79F", "T84V", "A119T"], "p24": ["E75D", "E98D", "G183N", "D187E", "T200N", "G225S"], "p6": ["T8S", "S24P", "P25S"], "p7": ["R10K", "K34R"], "pro": ["T12A"], "rev": ["V16I", "I21F", "Q74L", "L83I", "R99G"], "tat": ["S24R", "V29I", "F32L", "N40Q", "G61S", "S62N", "N67I", "E86K"], "vif": ["I31R", "D61N", "K63V", "E78D", "Q105R", "I124L", "R132K", "N140C", "R167K"], "vpr": ["P37L", "I70T", "Q86R", "S96P"], "vpu": ["P3S", "I21V", "K63T", "M65L"]}, "labels": {"aa": "INT: E256D; RT-p51: K22R, R104K, D123N, E177D, K281R, A297E, A376S, T386I, I435A; RT-p66: K22R, R104K, D123N, E177D, K281R, A297E, A376S, T386I, I435A, K454R; gp120: T23I, S34G, K37R, G57K, N64E, V99I, N102Q, V106I, -109T, N114T, A115V, I133T, K142R, K143G, L147F, D157K, N158G, N160D, L231M, H259Q, L260F, E262K, S263A, G265V, N272A, V305I, T308A, K323N, N327-, T332N, N334T, S335Q, I343L, -368E, -370G, -371I, -372A, -373S, -374T, -375Q, -376E, -377S, -378Q, -381E, T385N, P389Q, P412Q, T418S, -433T, N434S, -436D, S437A, T439I, Y458H; gp41: S88T, E119Q, D163S, K172Q, L191F, G221E, D230G, S256C, S277L, R294Q, R317W, Y330C, A343L; nef: I20M, V30G, T49N, D54A, A56T, M79I, G83A, K104E, Q107R, M148L, D149E, E179D, I194L; p17: A15T, G49S, Y79F, T84V, A119T; p24: E75D, E98D, G183N, D187E, T200N, G225S; p6: T8S, S24P, P25S; p7: R10K, K34R; pro: T12A; rev: V16I, I21F, Q74L, L83I, R99G; tat: S24R, V29I, F32L, N40Q, G61S, S62N, N67I, E86K; vif: I31R, D61N, K63V, E78D, Q105R, I124L, R132K, N140C, R167K; vpr: P37L, I70T, Q86R, S96P; vpu: P3S, I21V, K63T, M65L"}}}, {"name": "EU697906", "node_attrs": {"div": 0.13336, "accession": "EU697906", "clade_membership": {"value": "CRF25_cpx"}, "country": {"value": "SA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "J11233"}, "LANL_subtype": {"value": "CRF25_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C96T", "-159C", "-160G", "T200C", "T201C", "-217T", "T227A", "-305T", "G534T", "C539T", "C587T", "A605G", "T614A", "A705G", "A706G", "G771C", "C779T", "T788C", "C902T", "A920G", "G941A", "A1073G", "G1232A", "C1334T", "C1403T", "A1412G", "G1543A", "A1616G", "A1661G", "T1722C", "G1763A", "C1768A", "A1771G", "G1772A", "T1790C", "C1826T", "G1832T", "G1852A", "C1985T", "T1986C", "A1997G", "G1998A", "T1999G", "A2007G", "A2086T", "A2140G", "A2215C", "A2327C", "A2404G", "C2420T", "G2428A", "G2459A", "T2542A", "A2545C", "A2579G", "A2828G", "G2830A", "C2831T", "T2899C", "A2918C", "A2920G", "C3055A", "A3099G", "G3127A", "T3131G", "A3132G", "A3196G", "C3225T", "G3229A", "T3252C", "G3398A", "A3442G", "G3448A", "G3477A", "A3565G", "T3566C", "G3643A", "G3718A", "A3739G", "C3799T", "G3825A", "C3857A", "G3859A", "C3908G", "G3925A", "T3977C", "T4140C", "C4162T", "A4231G", "T4234G", "C4288T", "G4549A", "C4728A", "C4786T", "G4982A", "T5018C", "T5027C", "C5034T", "A5038G", "C5050G", "G5114A", "G5128A", "G5131A", "C5194A", "G5296A", "A5355C", "C5356T", "C5415A", "T5436A", "A5446T", "A5447C", "A5461G", "C5496T", "A5613G", "T5626G", "G5629T", "A5665G", "G5692C", "G5699A", "A5701G", "A5729G", "C5795G", "T5807G", "-5812G", "A5921C", "T5938C", "T5953C", "T5968C", "A5995G", "A6024G", "C6026A", "A6172C", "-6174A", "-6175T", "A6177T", "G6180C", "A6182G", "A6183G", "T6184A", "A6185G", "C6186T", "-6201G", "T6202C", "G6203A", "T6204C", "-6205T", "-6206A", "-6207C", "-6208A", "-6209A", "-6210T", "-6211A", "A6212T", "G6215C", "T6216C", "-6217A", "A6221G", "-6225G", "G6227C", "A6228T", "T6229G", "A6251G", "A6257T", "A6261T", "A6282C", "A6303G", "A6304G", "A6311G", "T6395A", "T6454C", "A6525G", "A6571G", "G6581A", "A6595G", "T6598C", "C6660T", "G6706A", "C6752A", "A6753G", "A6754T", "A6773G", "C6797A", "A6801C", "A6811C", "A6821G", "-6835G", "T6838C", "T6856G", "C6857A", "A6858G", "G6859T", "A6913G", "C6925T", "G6936T", "T6949C", "T6961A", "C6964A", "-6966A", "-6969A", "C6975T", "A6986G", "A6988G", "-6989G", "-6990A", "-6991A", "-6992C", "-6994T", "A7001-", "A7002-", "T7003-", "G7004-", "A7007-", "T7009-", "A7040G", "G7044A", "A7045T", "A7055G", "G7056A", "A7065G", "G7072A", "G7094A", "G7102C", "T7117C", "T7150G", "A7151G", "A7154G", "G7160T", "A7161C", "C7164G", "T7204C", "G7428A", "G7524A", "G7608A", "A7655T", "A7666G", "G7759A", "T7796A", "A7885T", "A7935C", "A7948G", "G7964A", "G7977A", "A7998G", "A8006G", "A8008G", "C8063A", "C8065T", "C8156T", "T8164C", "T8167A", "A8198G", "T8203C", "T8218C", "T8257C", "G8292A", "C8296T", "A8308G", "C8320T", "T8321G", "T8322C", "C8336A", "A8348G", "T8371C", "A8400T", "C8412A", "C8413G", "T8440C", "-8490A", "C8503A", "A8604G", "T8636A", "G8738A", "A8784G", "G8798T", "T8813C", "T8867C", "T8870C", "A8874C", "G8875A", "A8876T", "A8879G", "C8883T", "A8888G", "G8917C", "T8923A", "A8967G", "A8969G", "C9014T", "C9018A", "C9067T"], "INT": ["S17N", "L28I", "L45V", "M50I", "I122T"], "RT-p51": ["E40D", "E122K", "S162G", "K245E", "K275Q", "D320E", "D335G", "Y346G", "T377I"], "RT-p66": ["E40D", "E122K", "S162G", "K245E", "K275Q", "D320E", "D335G", "Y346G", "T377I", "R461K", "S491P"], "gp120": ["T23P", "L58M", "T107N", "-109N", "N111S", "N112T", "S113E", "N114E", "I133V", "T135S", "E136V", "K143T", "K150R", "I153V", "L156I", "S159D", "N161S", "S181T", "M204K", "K224R", "V243I", "T269I", "Q300S", "R307G", "Q315K", "E316A", "K319N", "K323E", "-326K", "N328-", "N334K", "H361L", "-368K", "N369-", "S382G", "T385S", "I396V", "R397N", "R401E", "Q404R", "M406I", "V414I", "R416N", "N432K", "-433D", "N434D", "-436S"], "gp41": ["S42N", "R74K", "S102N", "I118L", "S165T", "H211P", "G221R", "G225E", "D232G", "I235V", "L254I", "S299G", "L340A", "L345I"], "nef": ["V10A", "I20L", "P24S", "V33A", "-50N", "S88G", "D98E", "M148V", "E152D", "I168L", "R178H", "R192T", "I194K"], "p17": ["A67S", "D93E"], "p24": ["A14P", "P86A", "S210T"], "p6": ["F15L", "-23P", "P30Q", "K31R"], "p7": ["R26K"], "pro": ["T12S", "L63S", "S67E", "K70R"], "rev": ["T34A", "R39K", "H53R", "T54A", "P72H", "L73F", "S103F", "S106P", "S107T", "*117W"], "tat": ["H13Q", "T76P", "N80S"], "vif": ["H48N", "K63E", "T67I", "E101D", "K151R", "R181K", "G182D"], "vpr": ["T84L"], "vpu": ["S7A", "A8S", "I20V", "E29Q", "R31K", "K32E", "Q41R", "K63R", "M67R", "N69D"]}, "labels": {"aa": "INT: S17N, L28I, L45V, M50I, I122T; RT-p51: E40D, E122K, S162G, K245E, K275Q, D320E, D335G, Y346G, T377I; RT-p66: E40D, E122K, S162G, K245E, K275Q, D320E, D335G, Y346G, T377I, R461K, S491P; gp120: T23P, L58M, T107N, -109N, N111S, N112T, S113E, N114E, I133V, T135S, E136V, K143T, K150R, I153V, L156I, S159D, N161S, S181T, M204K, K224R, V243I, T269I, Q300S, R307G, Q315K, E316A, K319N, K323E, -326K, N328-, N334K, H361L, -368K, N369-, S382G, T385S, I396V, R397N, R401E, Q404R, M406I, V414I, R416N, N432K, -433D, N434D, -436S; gp41: S42N, R74K, S102N, I118L, S165T, H211P, G221R, G225E, D232G, I235V, L254I, S299G, L340A, L345I; nef: V10A, I20L, P24S, V33A, -50N, S88G, D98E, M148V, E152D, I168L, R178H, R192T, I194K; p17: A67S, D93E; p24: A14P, P86A, S210T; p6: F15L, -23P, P30Q, K31R; p7: R26K; pro: T12S, L63S, S67E, K70R; rev: T34A, R39K, H53R, T54A, P72H, L73F, S103F, S106P, S107T, *117W; tat: H13Q, T76P, N80S; vif: H48N, K63E, T67I, E101D, K151R, R181K, G182D; vpr: T84L; vpu: S7A, A8S, I20V, E29Q, R31K, K32E, Q41R, K63R, M67R, N69D"}}}]}]}]}, {"name": "NODE_0000527", "node_attrs": {"div": 0.07067, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C23T", "T49A", "-166A", "A398G", "C426A", "A645G", "C731T", "T824C", "A914G", "G987C", "G1404A", "A1712C", "C1782-", "A2317G", "A2463G", "C2615A", "T2632G", "G2656A", "C2749T", "A2794G", "G2821A", "C2845A", "G2869A", "A3293G", "C3376T", "T3559C", "A3630G", "T3668C", "T4153A", "C4162A", "A4273G", "C4396T", "A4642G", "T4643A", "A4652C", "T4665C", "C4667T", "C4674T", "A4695G", "A4697C", "A4726G", "T4727G", "A4737G", "C4786G", "A4820C", "G4835T", "T4858A", "A4871C", "G4878A", "C4883T", "G4888A", "G4892A", "A4904G", "A4911C", "C4919T", "T4967A", "C4976A", "A5056C", "G5167A", "T5170G", "G5173A", "G5176A", "A5362G", "G5372A", "A5375G", "A5385G", "A5398C", "A5418G", "A5471G", "T5472G", "A5493G", "A5538C", "C5769A", "G5864A", "-5866T", "A5906G", "A5921C", "A6173-", "-6189C", "C6363T", "G6368A", "C6397T", "G6403C", "G6547A", "T6551C", "C6563T", "G6577A", "T6598C", "C6618T", "G6644A", "C6692A", "T6694A", "A6718G", "A6788G", "C6792T", "T6793G", "G6806A", "C6807-", "T6808-", "C6810-", "T6815C", "-6835T", "T6856C", "G6905A", "C6925T", "G6948-", "A7027G", "A7042G", "-7147G", "G7160A", "G7244A", "G7519A", "A7552G", "C7775T", "A8308G", "G8317A", "T8492C", "C8503A", "T8675C", "C8699A", "T8708A", "C8741T", "A8794C", "T8904A", "C8905G", "T9028C", "C9108T", "T9134A", "A9135G"], "RT-p51": ["D250E", "T400A"], "RT-p66": ["D123S", "D250E", "T400A", "K512R"], "gp120": ["D4N", "K18E", "T23P", "N57T", "I153V", "T170V", "E183D", "T255V", "V264I", "H280R", "T313M", "A318-", "K319-", "R322-", "H324-", "N327-", "G351R", "-436T", "E464K"], "gp41": ["N251S"], "p17": ["L31M", "I104V"], "p24": ["V86Q", "G225S"], "rev": ["N8T"], "tat": ["I8L", "Y32W"], "vif": ["N19R", "K22N", "Y27H", "H30Y", "R37G", "N47R", "I51V", "T67R", "E78D", "Q83H", "L91Q", "R95S", "V98I", "G101D", "M109L", "H127Q", "S130R", "K157T"], "vpr": ["S94G"], "vpu": ["E66T", "-69V", "-73D", "-74F", "-75D"]}, "labels": {"aa": "RT-p51: D250E, T400A; RT-p66: D123S, D250E, T400A, K512R; gp120: D4N, K18E, T23P, N57T, I153V, T170V, E183D, T255V, V264I, H280R, T313M, A318-, K319-, R322-, H324-, N327-, G351R, -436T, E464K; gp41: N251S; p17: L31M, I104V; p24: V86Q, G225S; rev: N8T; tat: I8L, Y32W; vif: N19R, K22N, Y27H, H30Y, R37G, N47R, I51V, T67R, E78D, Q83H, L91Q, R95S, V98I, G101D, M109L, H127Q, S130R, K157T; vpr: S94G; vpu: E66T, -69V, -73D, -74F, -75D"}}, "children": [{"name": "results/subtype_trees/CRF43_02G.nwk", "node_attrs": {"div": 0.10741999999999999, "clade_membership": {"value": "CRF43_02G"}}, "branch_attrs": {"mutations": {"nuc": ["A46G", "A161G", "T213C", "T214G", "-217A", "A303T", "-304T", "T467C", "A492T", "A513C", "G534A", "A541G", "G579A", "C590T", "A592G", "T593G", "G614C", "G615A", "T635C", "C636T", "G653A", "G671A", "A697C", "A706G", "A711-", "G712-", "C713-", "C714-", "A715-", "A716-", "G717-", "T718-", "C719-", "G771T", "A785G", "G810A", "T852A", "A866G", "A887G", "A905C", "G956A", "C974T", "A978C", "C1013T", "G1078C", "A1142G", "G1192A", "T1214C", "T1262C", "A1271T", "G1278A", "G1279A", "T1335C", "G1388A", "T1409C", "C1514T", "A1656C", "-1747C", "-1748T", "T1752C", "C1754-", "C1755-", "C1756-", "A1771G", "A1775G", "G1781A", "T1783C", "T1785C", "A1786C", "T1790A", "T1796C", "G1819A", "A1828G", "C1864T", "G1901C", "T1954A", "T1997G", "G1998A", "T1999A", "A2002G", "T2024C", "A2113G", "A2314G", "G2362A", "A2374C", "A2422G", "G2431A", "G2462A", "T2479A", "T2499C", "G2602A", "A2641G", "A2727G", "G2914A", "T2944C", "G2950A", "C2968T", "C2975A", "C2985A", "G2998A", "C3046A", "T3059A", "A3071G", "G3127A", "A3132T", "G3142A", "G3167A", "A3205G", "A3208G", "C3223T", "A3304G", "A3307G", "C3319T", "T3358C", "A3385G", "T3469C", "A3508G", "A3529G", "C3542T", "C3577T", "T3628C", "G3631A", "A3643G", "C3665A", "A3674G", "G3679A", "A3682C", "G3685A", "G3737A", "A3760G", "A3866G", "A3989G", "T4117C", "A4178G", "C4258T", "G4264A", "G4267A", "A4372G", "G4459A", "A4519G", "A4525G", "G4573A", "A4774G", "G4786A", "T4805G", "A4817G", "T4826A", "T4910C", "T4925C", "T5018G", "A5021G", "A5059G", "T5062A", "A5085G", "G5086C", "G5087A", "A5090G", "A5140G", "A5143G", "A5186C", "T5209C", "C5215G", "C5227A", "G5236A", "A5246G", "C5248A", "T5251A", "A5272G", "T5275G", "C5281T", "T5292C", "A5293T", "C5294T", "A5312G", "C5314T", "C5333T", "C5359G", "C5361G", "A5372C", "A5376C", "C5382G", "A5396G", "A5432C", "A5444G", "C5451T", "T5454C", "T5466C", "G5482T", "T5484A", "A5537G", "G5557A", "C5559T", "A5560C", "A5563C", "C5584T", "A5612C", "T5626G", "C5679A", "A5711G", "A5720G", "A5727T", "G5730A", "G5794A", "A5805C", "T5899A", "T5980C", "A6044C", "A6045C", "T6154C", "-6222A", "-6225G", "C6289T", "A6313G", "A6327G", "G6336A", "G6339A", "A6394G", "T6436G", "C6446T", "G6456A", "G6466T", "C6483A", "A6500T", "G6526A", "C6545T", "G6550A", "C6559T", "A6581G", "A6706T", "A6709T", "T6724C", "T6769A", "A6799G", "G6802T", "G6809-", "G6821A", "C6824G", "A6841T", "A6844T", "C6849T", "C6857T", "T6863A", "-6951C", "C7024T", "A7060G", "C7096A", "T7107G", "A7123G", "C7127T", "A7161C", "G7256A", "G7269A", "G7459A", "C7597T", "G7658C", "A7673G", "T7675C", "G7735A", "T7757C", "T7783C", "A7818G", "C7898A", "T7912C", "A8006G", "A8011C", "C8048T", "G8116A", "T8167C", "C8213G", "A8323T", "G8354A", "T8384C", "C8415A", "T8440C", "C8480T", "G8487C", "-8490C", "C8491A", "C8492A", "T8495C", "C8499G", "A8531T", "G8570A", "T8594C", "C8666A", "A8726T", "G8798T", "C8843T", "G8852A", "G8933A", "C8951T", "C9018A", "G9027A", "T9081C", "C9097T", "A9099G", "C9129T", "A9131G"], "INT": ["I31V", "I72V", "I135V"], "RT-p51": ["D123S", "I135T", "K211R", "P294T", "A297E", "S322T", "I326V", "Y346F", "G358R", "E432D"], "RT-p66": ["I135T", "K211R", "P294T", "A297E", "S322T", "I326V", "Y346F", "G358R", "E432D", "H483Y", "Q524K", "K527E", "E529D", "V548I"], "gp120": ["N64P", "T110-", "-112T", "-124G", "N161G", "S162D", "R201K", "P210Q", "T216S", "V255I", "Q315K", "K316N", "K320Q", "S337T", "S365-", "N369-", "K418R", "V468I"], "gp41": ["L4M", "E119Q", "I124V", "K172R", "Q199K", "I235V", "L304V"], "nef": ["V33A", "A49P", "A50Q", "P53A", "E63D", "E152D"], "p1": ["N9H"], "p17": ["T53S", "I60L", "A67T", "K69R", "V82I", "Y86W", "E93D", "V94I", "D121A", "N124S", "S126-", "Q127-", "V128-"], "p24": ["A14S", "V27I", "S41T", "I83L", "R116T", "R154K", "E180D", "G183N"], "p6": ["P23S", "K31R", "L35S", "Y36P", "S47N", "*50W"], "pro": ["D35Q", "C67E"], "rev": ["T8A", "A15V", "H53R", "I55L", "P67H", "G90R", "S107P"], "tat": ["D2E", "N7S", "K19T", "N23S", "V36L", "Q54R", "G61S", "S62R", "K63Q", "P70S"], "vif": ["K63R", "R67K", "H73Q", "H80Q", "K158R", "T159K", "R167A", "E185G", "N186S", "Q187R", "T188P"], "vpr": ["N28H", "I63T", "I70V", "P85R", "Q86G", "N91H"], "vpu": ["K35R", "E40D", "E70D"]}, "labels": {"aa": "INT: I31V, I72V, I135V; RT-p51: D123S, I135T, K211R, P294T, A297E, S322T, I326V, Y346F, G358R, E432D; RT-p66: I135T, K211R, P294T, A297E, S322T, I326V, Y346F, G358R, E432D, H483Y, Q524K, K527E, E529D, V548I; gp120: N64P, T110-, -112T, -124G, N161G, S162D, R201K, P210Q, T216S, V255I, Q315K, K316N, K320Q, S337T, S365-, N369-, K418R, V468I; gp41: L4M, E119Q, I124V, K172R, Q199K, I235V, L304V; nef: V33A, A49P, A50Q, P53A, E63D, E152D; p1: N9H; p17: T53S, I60L, A67T, K69R, V82I, Y86W, E93D, V94I, D121A, N124S, S126-, Q127-, V128-; p24: A14S, V27I, S41T, I83L, R116T, R154K, E180D, G183N; p6: P23S, K31R, L35S, Y36P, S47N, *50W; pro: D35Q, C67E; rev: T8A, A15V, H53R, I55L, P67H, G90R, S107P; tat: D2E, N7S, K19T, N23S, V36L, Q54R, G61S, S62R, K63Q, P70S; vif: K63R, R67K, H73Q, H80Q, K158R, T159K, R167A, E185G, N186S, Q187R, T188P; vpr: N28H, I63T, I70V, P85R, Q86G, N91H; vpu: K35R, E40D, E70D", "clade": "CRF43_02G"}}, "children": [{"name": "MF109648", "node_attrs": {"div": 0.14384, "accession": "MF109648", "clade_membership": {"value": "CRF43_02G"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "15171_1_18.3"}, "LANL_subtype": {"value": "CRF43_02G"}}, "branch_attrs": {"mutations": {"nuc": ["A426T", "C435A", "A491G", "A509G", "A512G", "G542A", "A554G", "A644G", "A654G", "T662G", "G687A", "A708T", "A774T", "A809G", "A881G", "A956T", "C978G", "C988A", "G998A", "T1058C", "A1127G", "G1139A", "T1166C", "C1211A", "G1232A", "A1265T", "C1280T", "C1292T", "T1322C", "A1359T", "A1367G", "T1385C", "C1440A", "G1442A", "A1457T", "G1458-", "C1459-", "C1460-", "A1461G", "A1475G", "A1476G", "T1511C", "A1588G", "G1589A", "T1646C", "G1673A", "A1701T", "G1720T", "G1743A", "C1745T", "-1746C", "C1753-", "C1768A", "C1783-", "A1784-", "C1785A", "A1790C", "T1792C", "G1794A", "A1841T", "A1867G", "A1930G", "G1968A", "A1982G", "C1985T", "T1986G", "A2004G", "G2074A", "T2104C", "G2113T", "G2182A", "A2215T", "G2224A", "A2230G", "C2263T", "C2365T", "T2383C", "G2389A", "G2456C", "C2485T", "T2497C", "T2542C", "G2548A", "T2620C", "A2678T", "G2682A", "G2693A", "T2719C", "G2725A", "C2831T", "A2869G", "C2909G", "A3103G", "T3181G", "T3207C", "C3252T", "A3280G", "G3398A", "A3400G", "G3402A", "C3449A", "A3454G", "G3491A", "A3503C", "T3644C", "G3766A", "G3808A", "C3857A", "G3859A", "C3863T", "A3876G", "T3904C", "G3916A", "G3938A", "T3943C", "A3953G", "A3955G", "T3991C", "A4076C", "T4198C", "C4210T", "A4598G", "T4655C", "G4677A", "A4693G", "A4694C", "G4741A", "T4742C", "C4761T", "G4766A", "T4769-", "G4770-", "A4806C", "G4816A", "C4820A", "A4862G", "C4914T", "T4932A", "A4937C", "G5036T", "A5099G", "A5159G", "C5168T", "A5247C", "T5263C", "A5282T", "C5406A", "T5436C", "G5463A", "T5467A", "A5484G", "C5496A", "C5530T", "A5564C", "T5597-", "C5614-", "C5615-", "A5685G", "T5686C", "A5689T", "G5700A", "T5731A", "T5739G", "A5754G", "G5775A", "T5787C", "-5799T", "T5807G", "T5844G", "G5845A", "A5849T", "T5851C", "C5860T", "T5861G", "A5864-", "A5865-", "T5866-", "G5902A", "A5918G", "T5929C", "A5983T", "C6004T", "A6022G", "A6023C", "G6029C", "A6030C", "T6085G", "C6115T", "G6133A", "A6159G", "C6165T", "A6167G", "-6170T", "T6171G", "-6172T", "-6173A", "-6174A", "-6175T", "A6176G", "-6177A", "T6178G", "-6179A", "-6180C", "A6182G", "C6183A", "T6184G", "T6187C", "A6191-", "A6192-", "T6193-", "A6197-", "T6199-", "A6222C", "T6252C", "A6273G", "G6274A", "A6275G", "A6276T", "G6277A", "C6293T", "T6295G", "G6303A", "C6317G", "A6320G", "G6323-", "A6324-", "T6325-", "G6326-", "G6327-", "T6328-", "A6329-", "A6330-", "T6331-", "A6332-", "T6334-", "A6335-", "A6336-", "T6337-", "A6338-", "A6339-", "T6340-", "A6350C", "G6379A", "T6385C", "C6403A", "T6466A", "A6488G", "A6578G", "T6590A", "G6611A", "C6632T", "G6638A", "T6641G", "A6644G", "C6670T", "A6685G", "A6686G", "A6692-", "G6693-", "A6694-", "A6695-", "T6696-", "-6701A", "-6702T", "-6703C", "G6716A", "C6721T", "T6722G", "A6723C", "C6724A", "T6733A", "T6745C", "C6752A", "A6757T", "C6758T", "A6773G", "C6777A", "A6779G", "A6781T", "A6786C", "G6790T", "C6797G", "-6807G", "-6808T", "-6809A", "-6810T", "A6812C", "C6815T", "A6820G", "A6823G", "A6825T", "-6830A", "-6831A", "-6832T", "-6834T", "T6835C", "T6838C", "A6839G", "C6843G", "A6845G", "C6856T", "T6883C", "A6905G", "-6948T", "-6952A", "A6959-", "T6961-", "A7010-", "T7011-", "C7012-", "A7013-", "C7014-", "A7015-", "G7027A", "C7087T", "A7108G", "C7124A", "A7129C", "A7148-", "A7149-", "T7150-", "A7151-", "A7152-", "T7153-", "A7154-", "A7155-", "T7156-", "A7157-", "A7158-", "T7159-", "A7160-", "C7161-", "A7163-", "C7171T", "T7180A", "C7201T", "T7228C", "A7237G", "G7289C", "T7309A", "C7313A", "G7366A", "G7369A", "A7427G", "T7432C", "G7465A", "T7466C", "A7505C", "A7519G", "T7630G", "G7633A", "T7681C", "C7691G", "C7702A", "G7712C", "A7714T", "A7763C", "G7773A", "T7774C", "A7782G", "T7787C", "C7801A", "G7835A", "A7880G", "A7941G", "A7962G", "G7977A", "T8008G", "G8019A", "A8032T", "C8044A", "C8051A", "A8099G", "A8111G", "T8115C", "A8208G", "A8222G", "G8225A", "T8265C", "T8279G", "A8294C", "T8321G", "T8322C", "T8333C", "A8364G", "A8367T", "G8373A", "T8374G", "A8390G", "A8400C", "A8409-", "C8410-", "C8411-", "C8412-", "C8413-", "T8414-", "A8415-", "T8483C", "C8495A", "A8503C", "T8531-", "G8532-", "T8567G", "T8591A", "A8604G", "A8643G", "C8684T", "C8690T", "G8717C", "C8720T", "A8739G", "A8784G", "T8832C", "A8837G", "C8873A", "A8874G", "T8903C", "A8922G", "T8939C", "G8942A", "T8951G"], "INT": ["L28I", "P30S", "K34R", "D55N", "I60V", "I101L", "M275V"], "RT-p51": ["E6D", "E40D", "D121H", "I195L", "G196E", "A200T", "P272A", "V371A", "T386I", "V435M", "G436E"], "RT-p66": ["E6D", "E40D", "D121H", "I195L", "G196E", "A200T", "P272A", "V371A", "T386I", "V435M", "G436E", "L452I", "V466I", "T470P"], "gp120": ["S3A", "N5-", "T22A", "I56M", "T57P", "E59P", "H77Q", "N102S", "T104I", "N105D", "-106C", "-107N", "N108E", "-109T", "-110E", "-111N", "-113T", "I133T", "K140R", "K141V", "P155A", "I156V", "D157-", "N158-", "N160-", "G161-", "D162-", "I166L", "D183E", "N204K", "K212E", "I242V", "S246T", "A253T", "L260F", "E262K", "S263A", "I264V", "S278G", "R280I", "I281-", "A288T", "T292A", "D294I", "Q300K", "H302Y", "R307G", "T308K", "K309D", "N311T", "E312D", "K315E", "-318S", "-319I", "-322R", "-324V", "-326N", "-327I", "K329D", "T330S", "I331V", "R351G", "N414K", "L424I", "L425F", "N432-", "N434-", "N435-", "T436-", "N437-", "E479Q"], "gp41": ["S42G", "D109E", "Q130E", "S133R", "E137H", "K154Q", "S157N", "N160S", "F162L", "N166K", "V178I", "I193V", "Q213R", "E220G", "G225E", "S239N", "D247E", "I266V", "T270A", "V271A", "S277R", "N302S", "I307V", "A308T", "V321A", "C326G", "N331H", "F340A"], "nef": ["S8G", "S9C", "V11S", "I20L", "T23-", "P24-", "P25-", "E64-", "E65-", "S88G", "I101V", "Q125H", "I133V", "M148V", "D177E", "R178G", "I194V", "Y203*"], "p17": ["M31L", "L34I", "I107V", "N109K", "A118T", "S125C"], "p2": ["Q6K", "A12V", "I13-"], "p24": ["I15L", "E75D", "L83V", "T210S"], "p6": ["T8S", "S14I", "P30Q", "S35T", "P36-", "L38S", "A39T"], "p7": ["S4G", "K41R"], "pro": ["I15L", "R57K", "I62V", "L63C", "K69R"], "rev": ["S54A", "T62S", "H67L", "A68E", "D84G", "D88G"], "tat": ["K29I", "C31S", "N40K", "R52W", "Q63P", "R78G", "K85E"], "vif": ["V31I", "K36S", "S52N", "A62-"], "vpr": ["T19A", "N48A", "I60L"], "vpu": ["P3L", "L4E", "E5-", "V21I", "F27L", "I28L", "K38R", "R41K", "L42I", "D44E", "A65-", "T66-", "L67-", "V69-", "D70-", "M71-", "D73-", "F74-", "D75A", "D80N", "N81I"]}, "labels": {"aa": "INT: L28I, P30S, K34R, D55N, I60V, I101L, M275V; RT-p51: E6D, E40D, D121H, I195L, G196E, A200T, P272A, V371A, T386I, V435M, G436E; RT-p66: E6D, E40D, D121H, I195L, G196E, A200T, P272A, V371A, T386I, V435M, G436E, L452I, V466I, T470P; gp120: S3A, N5-, T22A, I56M, T57P, E59P, H77Q, N102S, T104I, N105D, -106C, -107N, N108E, -109T, -110E, -111N, -113T, I133T, K140R, K141V, P155A, I156V, D157-, N158-, N160-, G161-, D162-, I166L, D183E, N204K, K212E, I242V, S246T, A253T, L260F, E262K, S263A, I264V, S278G, R280I, I281-, A288T, T292A, D294I, Q300K, H302Y, R307G, T308K, K309D, N311T, E312D, K315E, -318S, -319I, -322R, -324V, -326N, -327I, K329D, T330S, I331V, R351G, N414K, L424I, L425F, N432-, N434-, N435-, T436-, N437-, E479Q; gp41: S42G, D109E, Q130E, S133R, E137H, K154Q, S157N, N160S, F162L, N166K, V178I, I193V, Q213R, E220G, G225E, S239N, D247E, I266V, T270A, V271A, S277R, N302S, I307V, A308T, V321A, C326G, N331H, F340A; nef: S8G, S9C, V11S, I20L, T23-, P24-, P25-, E64-, E65-, S88G, I101V, Q125H, I133V, M148V, D177E, R178G, I194V, Y203*; p17: M31L, L34I, I107V, N109K, A118T, S125C; p2: Q6K, A12V, I13-; p24: I15L, E75D, L83V, T210S; p6: T8S, S14I, P30Q, S35T, P36-, L38S, A39T; p7: S4G, K41R; pro: I15L, R57K, I62V, L63C, K69R; rev: S54A, T62S, H67L, A68E, D84G, D88G; tat: K29I, C31S, N40K, R52W, Q63P, R78G, K85E; vif: V31I, K36S, S52N, A62-; vpr: T19A, N48A, I60L; vpu: P3L, L4E, E5-, V21I, F27L, I28L, K38R, R41K, L42I, D44E, A65-, T66-, L67-, V69-, D70-, M71-, D73-, F74-, D75A, D80N, N81I"}}}, {"name": "CRF43_02G_NODE_0000001", "node_attrs": {"div": 0.11016, "clade_membership": {"value": "CRF43_02G"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "A571T", "-1782T", "A2932G", "A2937G", "A2986G", "A3220G", "G3229A", "T3253C", "A3448G", "A3616G", "A4063C", "T5072C", "A5146G", "A5148C", "A5729G", "-5810T", "-5812G", "A6188G", "-6195G", "-6204G", "-6207C", "-6209A", "-6210T", "-6211G", "-6212T", "-6216A", "-6218G", "-6220G", "G6227A", "A6229C", "A6230T", "-6333G", "-6697C", "A6947-", "T6949-", "-6957T", "-6982G", "-6983T", "-6984C", "-6985T", "-6987A", "-6988T", "-6989A", "-7165T", "A7303G", "A7677G", "T8268C", "G8864A"], "INT": ["E96D"], "RT-p51": ["K281R"], "RT-p66": ["K281R"], "gp120": ["-113C", "E125N", "I126L"], "gp41": ["V322A"], "p17": ["Y79F"], "p24": ["P207S"], "tat": ["T76I"], "vpu": ["-72V"]}, "labels": {"aa": "INT: E96D; RT-p51: K281R; RT-p66: K281R; gp120: -113C, E125N, I126L; gp41: V322A; p17: Y79F; p24: P207S; tat: T76I; vpu: -72V"}}, "children": [{"name": "EU697904", "node_attrs": {"div": 0.13768, "accession": "EU697904", "clade_membership": {"value": "CRF43_02G"}, "country": {"value": "SA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "J11223"}, "LANL_subtype": {"value": "CRF43_02G"}}, "branch_attrs": {"mutations": {"nuc": ["G112A", "C362T", "C467T", "C471A", "C482T", "C513A", "C539T", "G608A", "A656G", "C767T", "A774T", "A815G", "G887A", "C905A", "G968A", "A1116C", "C1136T", "T1172A", "G1199A", "C1280T", "C1330A", "C1350T", "A1355G", "A1412G", "A1418G", "A1476G", "G1619A", "T1676C", "T1679C", "A1687G", "C1712T", "G1743-", "C1744-", "C1745-", "-1746G", "C1752T", "-1754C", "-1755C", "-1756A", "C1833A", "G1848A", "A1907G", "A1920G", "G1968A", "T1986C", "G2002A", "G2056C", "A2178C", "A2210T", "C2211T", "A2215G", "C2356T", "C2452A", "A2500G", "G2518A", "C2528T", "A2529G", "G2530T", "T2542G", "A2645G", "A2678C", "G2683A", "T2719C", "A2969G", "T3034A", "C3067A", "G3071A", "A3167G", "C3194G", "G3203C", "A3217G", "A3218G", "A3226G", "G3250A", "G3293A", "G3304A", "C3358T", "A3364C", "A3366G", "A3400G", "C3405T", "A3406G", "A3443T", "T3450A", "G3529A", "T3544C", "A3592C", "G3643A", "A3854G", "A3862C", "T3909A", "G3916A", "T3977C", "C3995A", "A4036G", "T4039C", "T4135C", "A4155G", "A4176G", "T4258C", "C4270T", "A4397C", "A4459G", "C4501T", "G4607A", "C4728A", "G4774C", "T4832C", "G4864A", "A4878G", "G5018A", "C5050A", "C5115T", "G5246A", "A5248C", "G5296A", "C5384T", "C5406T", "T5462A", "C5612A", "-5616C", "A5656C", "A5668G", "G5784A", "C5792A", "A5793G", "A5794G", "C5795A", "C5797-", "T5798-", "G5800T", "A5804C", "C5805A", "G5808A", "G5809C", "-5811T", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819A", "-5820T", "-5821G", "-5822T", "-5823G", "-5824G", "G5939A", "A6022G", "T6049C", "G6088T", "C6115T", "A6132T", "A6159C", "T6163-", "A6164-", "C6165-", "T6166-", "A6167-", "A6168-", "T6169-", "T6171-", "A6176-", "T6178-", "A6192C", "-6194T", "-6196T", "-6198A", "-6200A", "-6201A", "-6205A", "-6206C", "-6208A", "-6213T", "-6214A", "-6215A", "-6217T", "-6219T", "A6223G", "A6251G", "A6263T", "C6293A", "G6303A", "G6313A", "T6328G", "A6349C", "A6375C", "G6379A", "T6395A", "T6421C", "T6446C", "T6460A", "A6475G", "G6593A", "A6599T", "A6602T", "A6614C", "A6617G", "A6620C", "A6639G", "A6640C", "T6658C", "A6692G", "A6695T", "G6716A", "C6752G", "A6780G", "T6792C", "C6797A", "-6807A", "-6808G", "-6810G", "A6811C", "A6813C", "C6815A", "T6816C", "A6817T", "G6819C", "A6821C", "C6826T", "T6827C", "A6833-", "T6838C", "T6841G", "A6848C", "C6864T", "T6928C", "G6935A", "A6944-", "A6945-", "T6946-", "-6948G", "-6949G", "-6952T", "-6955G", "-6956T", "-6958T", "-6960A", "-6974G", "-6975A", "-6976A", "-6977T", "-6978C", "-6979A", "-6980G", "-6981G", "-6986G", "-6990A", "-6991T", "A7010C", "C7016A", "C7087A", "C7089A", "A7095T", "A7152T", "A7158G", "-7162T", "-7164A", "G7168C", "T7192C", "G7197A", "G7289C", "C7313A", "A7459G", "A7641G", "A7676G", "A7690G", "A7693C", "C7699T", "A7700G", "G7701A", "C7702T", "G7720A", "C7747A", "C7801T", "A7885G", "T7888A", "A7898C", "C7921T", "C7936T", "A7943C", "G7945A", "G8006A", "C8011A", "G8019A", "A8032G", "C8044A", "T8048G", "G8055A", "T8122C", "T8155C", "G8159T", "G8180A", "A8240G", "A8241G", "C8291A", "T8366G", "A8372G", "T8374G", "C8382T", "G8388A", "G8393A", "A8396G", "A8407G", "A8409G", "C8411A", "C8412G", "C8413G", "T8414A", "T8456C", "A8560G", "G8590C", "C8603T", "A8604G", "T8636A", "A8643G", "A8663G", "C8675T", "C8676T", "G8678A", "G8717T", "C8723T", "G8818A", "C8921T", "A8922G", "T8939C", "G8942A", "A8954G"], "INT": ["N27D", "L45Q", "L74M", "K127R", "N134S", "I208L", "D278N"], "RT-p51": ["E28A", "T39L", "Q145C", "M184V", "I195L", "I292V", "D324E", "V326I", "R358G", "Q367E", "E370Q", "I375V", "A400T", "K424R", "A437V"], "RT-p66": ["E28A", "T39L", "Q145C", "M184V", "I195L", "I292V", "D324E", "V326I", "R358G", "Q367E", "E370Q", "I375V", "A400T", "K424R", "A437V", "T450S", "L452Q"], "gp120": ["D29N", "I56M", "E78D", "K93M", "N102T", "-106A", "N108-", "-114N", "I133V", "I137L", "L147I", "-159E", "N160S", "K174T", "S181T", "D202E", "E247K", "I249F", "T250S", "K254Q", "I255V", "I256L", "R280G", "I281F", "A288T", "Q300E", "K309R", "M313T", "I332L", "T337I", "G361R", "N364-", "-379N", "-381S", "-382G", "-383S", "-384D", "-385N", "I386L", "L388I", "A412E", "N414I", "-433I", "N435S", "E438D", "R448K", "E479Q"], "gp41": ["D113G", "N125G", "Q130H", "S133D", "D148E", "K199Q", "V235I", "S239N", "D247E", "L249V", "S251N", "G286W", "G293S", "N313G", "L330I"], "nef": ["S8R", "I10M", "V11G", "P14S", "V16I", "Q22R", "Q73R", "G83A", "S88G", "D98E", "I101V", "Q125H", "G159E", "I194V"], "p17": ["L46I", "L60I", "I107M"], "p24": ["I15L", "Q86P", "I129L", "T200N"], "p6": ["N3S", "S23-", "S24P", "P25S", "-26Q", "Q52K"], "p7": ["S4G"], "pro": ["T12K", "G17E", "N37D", "K41R", "R57K", "L63P"], "rev": ["P30S", "E32A", "G33R", "R53H", "L55I", "T62A", "H67R", "S92P", "S103P", "G104V", "G111E"], "tat": ["P3L", "R78S", "G79E"], "vif": ["H48N", "R63T", "R93K", "I98V", "T155K", "P177S"], "vpr": ["A4V"], "vpu": ["I17L", "T66I", "M71N"]}, "labels": {"aa": "INT: N27D, L45Q, L74M, K127R, N134S, I208L, D278N; RT-p51: E28A, T39L, Q145C, M184V, I195L, I292V, D324E, V326I, R358G, Q367E, E370Q, I375V, A400T, K424R, A437V; RT-p66: E28A, T39L, Q145C, M184V, I195L, I292V, D324E, V326I, R358G, Q367E, E370Q, I375V, A400T, K424R, A437V, T450S, L452Q; gp120: D29N, I56M, E78D, K93M, N102T, -106A, N108-, -114N, I133V, I137L, L147I, -159E, N160S, K174T, S181T, D202E, E247K, I249F, T250S, K254Q, I255V, I256L, R280G, I281F, A288T, Q300E, K309R, M313T, I332L, T337I, G361R, N364-, -379N, -381S, -382G, -383S, -384D, -385N, I386L, L388I, A412E, N414I, -433I, N435S, E438D, R448K, E479Q; gp41: D113G, N125G, Q130H, S133D, D148E, K199Q, V235I, S239N, D247E, L249V, S251N, G286W, G293S, N313G, L330I; nef: S8R, I10M, V11G, P14S, V16I, Q22R, Q73R, G83A, S88G, D98E, I101V, Q125H, G159E, I194V; p17: L46I, L60I, I107M; p24: I15L, Q86P, I129L, T200N; p6: N3S, S23-, S24P, P25S, -26Q, Q52K; p7: S4G; pro: T12K, G17E, N37D, K41R, R57K, L63P; rev: P30S, E32A, G33R, R53H, L55I, T62A, H67R, S92P, S103P, G104V, G111E; tat: P3L, R78S, G79E; vif: H48N, R63T, R93K, I98V, T155K, P177S; vpr: A4V; vpu: I17L, T66I, M71N"}}}, {"name": "CRF43_02G_NODE_0000002", "node_attrs": {"div": 0.11839, "clade_membership": {"value": "CRF43_02G"}}, "branch_attrs": {"mutations": {"nuc": ["G161T", "T596C", "G645T", "G1090A", "C1350A", "C1439T", "-1746T", "T1748C", "C1749T", "A2032G", "A2629G", "A2815G", "G2837A", "A3079G", "C3303T", "A3524G", "C3559A", "T3746C", "T3853C", "A3944G", "T5102C", "C5237T", "C5611A", "-5616A", "C5641T", "-5799T", "-5811G", "G6035A", "-6172C", "C6189G", "C6190G", "-6194A", "-6198C", "-6203G", "A6221C", "A6276G", "A6282C", "A6330C", "A6338G", "C6477A", "-6834A", "A6950-", "-6960T", "-6962A", "-6965A", "-6966C", "-6986A", "-6993C", "G7026A", "A7096T", "G7232A", "G7628A", "T7642C", "A7722C", "G8105A", "C8291T", "T8337A", "A8653G", "T8701A", "A8746T", "C8934A", "T8935A"], "INT": ["S57G"], "RT-p51": ["I178M", "D248N", "T403M"], "RT-p66": ["I178M", "D248N", "T403M", "T477A", "D488E"], "gp120": ["V61I", "-110N", "K141R", "K143T", "K150R", "T208K", "-327N", "K329T", "R391K", "-433N", "V460I"], "gp41": ["M4L", "D109N", "N125S", "N140T", "A268T", "L330F", "F340L", "L345Q"], "nef": ["P25T", "K104R", "F120Y", "Y135F", "L198K"], "p17": ["V104L"], "p24": ["S120N"], "rev": ["S86N"], "vpr": ["H45Y", "N48E"], "vpu": ["Q2T"]}, "labels": {"aa": "INT: S57G; RT-p51: I178M, D248N, T403M; RT-p66: I178M, D248N, T403M, T477A, D488E; gp120: V61I, -110N, K141R, K143T, K150R, T208K, -327N, K329T, R391K, -433N, V460I; gp41: M4L, D109N, N125S, N140T, A268T, L330F, F340L, L345Q; nef: P25T, K104R, F120Y, Y135F, L198K; p17: V104L; p24: S120N; rev: S86N; vpr: H45Y, N48E; vpu: Q2T"}}, "children": [{"name": "EU697909", "node_attrs": {"div": 0.14382999999999999, "accession": "EU697909", "clade_membership": {"value": "CRF43_02G"}, "country": {"value": "SA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "J11456"}, "LANL_subtype": {"value": "CRF43_02G"}}, "branch_attrs": {"mutations": {"nuc": ["C44T", "G46A", "T71C", "A311C", "C362T", "G378A", "G424A", "G438A", "A440T", "A509G", "A515G", "G541A", "A543G", "C558A", "C583T", "A619G", "C623T", "G687A", "C707T", "A708G", "T771C", "C827T", "A932G", "C988A", "A1025G", "C1060A", "C1330A", "A1352G", "G1498A", "A1501T", "T1535C", "T1559C", "A1588G", "A1776G", "G1779A", "C1826T", "G1828A", "T1987C", "A2127G", "C2263T", "C2499A", "G2704A", "T2776C", "A2975C", "C3178T", "G3220T", "G3221T", "A3230G", "C3449A", "G3477A", "A3489G", "T3497A", "C3498A", "A3619T", "A3737G", "A3835G", "G3859A", "C3994T", "T4039A", "C4132T", "C4149T", "G4244C", "C4288T", "A4303T", "C4471A", "T4670C", "A4684G", "A4694T", "A4760T", "A4775G", "T4827C", "G4855A", "A4865C", "C4898T", "A4936G", "T4957C", "A4958G", "A4968T", "A5048G", "C5056T", "C5148T", "A5282C", "C5306A", "G5385A", "A5433T", "T5584C", "C5612T", "A5621C", "A5644G", "T5686C", "G5700A", "G5720A", "C5734A", "G5858A", "A5867C", "C5869A", "T5911C", "T5941C", "A5965G", "T5992C", "A6023T", "T6025C", "G6029A", "T6085G", "C6160A", "-6170A", "-6177C", "-6179T", "-6180G", "A6182C", "A6191G", "T6193C", "-6196T", "-6202G", "-6205G", "-6206A", "-6208A", 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"L321-", "K323-", "F325-", "N328I", "T330N", "N334K", "S335P", "S336H", "T337A", "N358D", "G361E", "-379N", "-380T", "-381S", "-382G", "-383S", "-384D", "-385T", "T439V"], "gp41": ["V7F", "A14T", "Q130E", "S133R", "N160S", "S165T", "R172K", "H211R", "Q213W", "S256C", "I266V", "A267I", "V304I"], "nef": ["E15A", "R71K", "I133V", "V153I", "R192N", "I194R"], "p17": ["A15T", "R30K", "V35I", "R69K", "T70A", "L75I", "A83V", "K95R", "A118T", "S125G"], "p24": ["S14P", "T110N", "T200N", "S207T"], "p6": ["K33E", "E34K", "W50*"], "p7": ["R11K", "N12I", "K41R"], "rev": ["P31L", "H67F", "Q74L", "D84G", "C85D", "I102V", "V109I"], "tat": ["K29M", "S70P", "I76A", "R78G"], "vif": ["K33R", "K36N", "R90K", "R93S", "E117G", "I124T", "I128L", "T157I", "P188S"], "vpr": ["Y15F", "I60L", "L68M", "G94S"], "vpu": ["T2I", "E5A", "I13V", "V21I", "F27L", "L43I"]}, "labels": {"aa": "INT: A125V, E157Q, D232E; RT-p51: K11R, T135K, T294P, A376S, S379G; RT-p66: K11R, T135K, T294P, A376S, S379G, L452I, R461K, K465R, S468N, I548V; gp120: A2T, N5Q, T57S, E59K, H77Q, N102K, -106I, -107T, N108C, -109P, -111G, T112D, C113S, -114T, K127T, S130T, T143A, N158G, -159A, D162S, K201R, D202E, K203G, N206S, Q210E, E240G, D251N, I255N, E265A, A291T, T292G, D294I, D297N, H302Y, V305I, E312N, M313T, L314-, K315-, N316-, V317-, Q320-, L321-, K323-, F325-, N328I, T330N, N334K, S335P, S336H, T337A, N358D, G361E, -379N, -380T, -381S, -382G, -383S, -384D, -385T, T439V; gp41: V7F, A14T, Q130E, S133R, N160S, S165T, R172K, H211R, Q213W, S256C, I266V, A267I, V304I; nef: E15A, R71K, I133V, V153I, R192N, I194R; p17: A15T, R30K, V35I, R69K, T70A, L75I, A83V, K95R, A118T, S125G; p24: S14P, T110N, T200N, S207T; p6: K33E, E34K, W50*; p7: R11K, N12I, K41R; rev: P31L, H67F, Q74L, D84G, C85D, I102V, V109I; tat: K29M, S70P, I76A, R78G; vif: K33R, K36N, R90K, R93S, E117G, I124T, I128L, T157I, P188S; vpr: Y15F, I60L, L68M, G94S; vpu: T2I, E5A, I13V, V21I, F27L, L43I"}}}, {"name": "EU697905", "node_attrs": {"div": 0.14153, "accession": "EU697905", "clade_membership": {"value": "CRF43_02G"}, "country": {"value": "SA"}, "date": {"value": 2003.0}, "Strain_name": {"value": "J11232"}, "LANL_subtype": {"value": "CRF43_02G"}}, "branch_attrs": {"mutations": {"nuc": ["A50G", "A166G", "C213T", "G214A", "A216T", "C264A", "T303A", "T304A", "-305T", "G428A", "C539G", "A632G", "A654G", "G706A", "C845A", "A852T", "G992A", "T1004G", "A1046G", "A1049G", "A1077G", "C1136T", "G1142A", "T1245C", "G1247A", "T1271G", "C1334T", "C1335T", "C1342G", "A1350G", "T1385C", "G1452T", "A1474G", "G1477A", "G1553A", "C1650T", "G1664A", "G1691A", "G1766A", "G1775C", "A1855G", "C1865T", "C2024T", "G2074A", "A2293G", "A2406G", "T2443C", "C2485T", "A2557G", "A2592G", "C2596T", "A2616G", "A2617G", "G2641A", "C2720T", "G2842A", "A2925G", "G3165A", "G3206C", "A3217G", "A3218G", "A3224G", "C3225T", "C3266T", "G3344A", "T3497C", "A3502G", "C3610T", "A3675G", "C3682T", "G3686A", "G3694A", "A3733G", "T3778C", "G3834A", "T3844C", "G3869C", 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"Q137H"], "RT-p51": ["K104R", "K166R", "K174R", "K277R", "R357K", "V371L", "I375V", "T377V", "V417I"], "RT-p66": ["K104R", "K166R", "K174R", "K277R", "R357K", "V371L", "I375V", "T377V", "V417I", "S468P", "E527G", "V531I"], "gp120": ["N52S", "E59V", "P64T", "K93M", "T104S", "N105-", "-109V", "-111V", "-114P", "-115S", "-116Q", "-117G", "-118N", "-119M", "-120C", "-121E", "-122E", "-123Q", "L151F", "D157G", "-159D", "N160S", "D183E", "K201N", "N206T", "A253T", "E262K", "I264V", "R307G", "T308K", "K309A", "K315R", "-318A", "-319A", "-322K", "-324V", "-326T", "T329S", "-365S", "-366K", "-367W", "-368S", "-369N", "-370N", "-371T", "L424I", "L425I", "N432I", "N434S", "N435T", "T436G", "N437S"], "gp41": ["I24L", "T25A", "V28G", "V30A", "Q119E", "Q129L", "T140I", "M176I", "G221R", "L249I", "C253W", "L254I", "E272Q", "V304F"], "nef": ["S9C", "A38D", "I43L", "P49S", "Q50H", "D63N", "Y81F", "I133T", "D152E", "V153L", "G159E", "I168L", "M173I"], "p1": ["P7S"], "p17": ["M31I", "I107V", "S124N"], "p2": ["A10S"], "p24": ["T41S", "Q86P", "I91M", "T116A", "D180E", "A204G", "S207A"], "p6": ["E32D"], "p7": ["K3R", "S4N"], "rev": ["A8P", "P30S", "R39K", "A68T", "P72D", "L73F", "E87Q", "R90T", "S92P"], "tat": ["P3L", "N12S", "S23N", "K29N", "N40K", "R54P", "P68S"], "vif": ["K36R", "G60E", "L64I", "K122R", "T170A"], "vpr": ["Y15S"], "vpu": ["I28V", "K38R"]}, "labels": {"aa": "INT: R20K, V32L, K111R, K127R, Q137H; RT-p51: K104R, K166R, K174R, K277R, R357K, V371L, I375V, T377V, V417I; RT-p66: K104R, K166R, K174R, K277R, R357K, V371L, I375V, T377V, V417I, S468P, E527G, V531I; gp120: N52S, E59V, P64T, K93M, T104S, N105-, -109V, -111V, -114P, -115S, -116Q, -117G, -118N, -119M, -120C, -121E, -122E, -123Q, L151F, D157G, -159D, N160S, D183E, K201N, N206T, A253T, E262K, I264V, R307G, T308K, K309A, K315R, -318A, -319A, -322K, -324V, -326T, T329S, -365S, -366K, -367W, -368S, -369N, -370N, -371T, L424I, L425I, N432I, N434S, N435T, T436G, N437S; gp41: I24L, T25A, V28G, V30A, Q119E, Q129L, T140I, 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{"aa": "INT: S255N; RT-p51: I329V, R390K, E413D, K431T; RT-p66: I329V, R390K, Q394R, E413D, K431T, R463K; gp120: K37S, -159N, K323E, -366S, K472R; gp41: G286W; nef: T51N, E64D, G83A, K105Q, E108D, H116N, I133T, Y135F; p17: E62K, S66P, K69Q, S72T, D102E, K103E, E106K, N109K, K112Q, A120M, T122E; pro: K14R; rev: D7S, G104V; tat: K29V, R53K, Q54H; vif: R77K, K92R, E117D, Q187P; vpr: G89V, A93P; vpu: -72G"}}, "children": [{"name": "NODE_0000532", "node_attrs": {"div": 0.08926999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T473C", "C558A", "A571T", "A699G", "T1004C", "G1078C", "C1094T", "C1187T", "G1247A", "G1472A", "T1535C", "G1763A", "T1796C", "A1903T", "G2182A", "G2578A", "A2722G", "G2842A", "G2926A", "G2950A", "G2980A", "T3535A", "A3931C", "A4012G", "T4079C", "A4561G", "G4677A", "A4717T", "C4820T", "C4965G", "A5122G", "C5614T", "T5653G", "T5654G", "A5685T", "G5692C", "G5699A", "A5701G", "T5731A", "C5797-", "G5809-", "-6195A", "-6196T", 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"C6826A", "A6836-", "A6837-", "T6838-", "A6848G", "C6849T", "C6858G", "A6859T", "T6876C", "A6884G", "C6885T", "C6888T", "A6889G", "T6892C", "T6898C", "A6905G", "C6919T", "T6922C", "T6932A", "G6935C", "C6938T", "T6946C", "-6953T", "-6954G", "-6955G", "-6966C", "-6967T", "-6968T", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975C", "-6976T", "-6984C", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "-6991C", "-6992A", "-6993C", "-6994T", "G7027A", "G7042A", "G7044A", "A7045C", "A7055G", "G7056A", "C7064A", "G7088A", "C7089G", "A7090C", "A7094C", "C7096A", "C7101G", "T7105C", "A7106T", "T7107C", "C7114T", "A7123G", "A7126G", "G7147T", "A7152G", "T7153C", "-7162G", "-7165C", "G7190A", "G7197A", "G7225A", "A7244G", "C7250T", "G7289C", "T7309A", "C7313A", "G7315A", "G7322T", "C7324G", "T7325C", "C7328T", "A7339G", "A7375G", "C7379T", "T7392C", "T7400C", "T7403C", "C7411T", "G7428A", "A7447T", "G7456A", "C7463A", "T7489A", "A7492G", "A7519G", "A7549G", "C7561T", "C7579T", "C7597T", "C7603T", "A7604G", "T7625C", "T7627G", "G7633C", "G7640A", "A7657G", "A7660G", "G7669A", "A7676G", "C7688G", "A7689G", "A7690C", "C7691T", "A7692T", "C7703T", "G7712C", "G7729A", "A7734G", "C7747A", "C7762T", "G7765A", "A7782G", "G7790A", "T7796A", "A7807G", "G7835A", "C7898A", "T7912A", "A7962G", "G7977A", "A8032G", "C8038G", "C8047T", "G8050A", "T8122C", "C8123T", "G8173A", "T8203C", "G8254A", "T8256C", "A8269G", "C8277T", "T8279G", "A8284G", "A8303G", "G8304T", "G8308A", "A8323G", "G8335T", "C8336T", "A8342C", "A8364C", "-8367T", "-8368C", "A8378G", "T8568C", "C8666T", "T8779A", "A8784G", "C8810T", "A8812C", "A8869C", "G8875A", "A8876G", "A8879G", "T8887G", "G8893A", "G8945T", "T9040C", "C9045T"], "INT": ["I31V", "V112I", "Y227F"], "RT-p51": ["K43R", "A98S", "D123S", "I135T", "E207K", "K211S", "D320E", "D324E", "Q334L", "Q394R", "A400V", "V435A", "F440Y"], "RT-p66": ["K43R", "A98S", "I135T", "E207K", "K211S", "D320E", "D324E", "Q334L", "A400V", "V435A", "F440Y", "R461K", "V466I", "V467I", "S468T", "T477A", "H483Q", "L484I"], "gp120": ["E18K", "D19E", "D21T", "P23T", "S34D", "T35A", "S37V", "I56V", "T57V", "K69E", "E74D", "H77Q", "E86Q", "N105D", "-106F", "-109A", "-111N", "-112T", "-113N", "-114N", "-121M", "-122E", "-123K", "-124G", "E136S", "K141M", "K150S", "P155Q", "I156M", "N159D", "N161S", "I166T", "N167S", "V170T", "T172V", "K174T", "D183E", "A196V", "R201N", "D202N", "N204T", "K212T", "K224R", "E247K", "I249F", "V255T", "N261K", "E262D", "S263P", "S278R", "R280T", "I281M", "Q287R", "A288V", "F289L", "A291T", "D294Q", "Q300K", "V305I", "E312N", "M313T", "Q315G", "K316Q", "V317I", "-318V", "-319E", "-322R", "-324Q", "-327N", "I332V", "S335R", "L341P", "T344V", "T345M", "R351G", "S360T", "G361Q", "S366T", "-367W", "-371T", "-374T", "-375T", "-378N", "-379N", "-384D", "R397N", "R401E", "Q404K", "A412S", "N414Q", "T416R", "K418S", "-433S", "D446N", "R448K", "K464E"], "gp41": ["L4I", "V7L", "F8L", "L9F", "I24M", "V30A", "S42N", "L54M", "T101A", "Y108L", "E110D", "D113N", "I118M", "N125D", "Q129G", "Q130L", "E137Q", "K144R", "D148E", "N160S", "D163N", "S165T", "V178I", "Q199K", "E220G", "G225E", "V318A", "A325V", "C326G", "R334V", "F340L"], "nef": ["S8R", "V146E", "M148V", "N157T", "E176A", "R178K", "V182R", "R184K", "E201N"], "p17": ["M31L", "G49D", "K62G", "K76R", "I107A", "Q113K", "T115-", "S125N", "V128A"], "p2": ["A10-", "A12T"], "p24": ["R116T"], "p6": ["L35V"], "rev": ["E11D", "T62A", "L64V", "P67S", "A68T", "S92L", "V109I"], "tat": ["N23T", "T58P", "G61S", "K85E"], "vif": ["I124L", "Q127R", "T159A", "E185G"], "vpr": ["N91D"], "vpu": ["T24I", "E40Q"]}, "labels": {"aa": "INT: I31V, V112I, Y227F; RT-p51: K43R, A98S, D123S, I135T, E207K, K211S, D320E, D324E, Q334L, Q394R, A400V, V435A, F440Y; RT-p66: K43R, A98S, I135T, E207K, K211S, D320E, D324E, Q334L, A400V, V435A, F440Y, R461K, V466I, V467I, S468T, T477A, H483Q, L484I; gp120: E18K, D19E, D21T, P23T, S34D, T35A, S37V, I56V, T57V, K69E, E74D, H77Q, E86Q, N105D, -106F, -109A, -111N, -112T, -113N, -114N, -121M, -122E, -123K, -124G, E136S, K141M, K150S, P155Q, I156M, N159D, N161S, I166T, N167S, V170T, T172V, K174T, D183E, A196V, R201N, D202N, N204T, K212T, K224R, E247K, I249F, V255T, N261K, E262D, S263P, S278R, R280T, I281M, Q287R, A288V, F289L, A291T, D294Q, Q300K, V305I, E312N, M313T, Q315G, K316Q, V317I, -318V, -319E, -322R, -324Q, -327N, I332V, S335R, L341P, T344V, T345M, R351G, S360T, G361Q, S366T, -367W, -371T, -374T, -375T, -378N, -379N, -384D, R397N, R401E, Q404K, A412S, N414Q, T416R, K418S, -433S, D446N, R448K, K464E; gp41: L4I, V7L, F8L, L9F, I24M, V30A, S42N, L54M, T101A, Y108L, E110D, D113N, I118M, N125D, Q129G, Q130L, E137Q, K144R, D148E, N160S, D163N, S165T, V178I, Q199K, E220G, G225E, V318A, A325V, C326G, R334V, F340L; nef: S8R, V146E, M148V, N157T, E176A, R178K, V182R, R184K, E201N; p17: M31L, G49D, K62G, K76R, I107A, Q113K, T115-, S125N, V128A; p2: A10-, A12T; p24: R116T; p6: L35V; rev: E11D, T62A, L64V, P67S, A68T, S92L, V109I; tat: N23T, T58P, G61S, K85E; vif: I124L, Q127R, T159A, E185G; vpr: N91D; vpu: T24I, E40Q", "clade": "CRF14_BG"}}, "children": [{"name": "CRF14_BG_NODE_0000001", "node_attrs": {"div": 0.13887999999999998, "clade_membership": {"value": "CRF14_BG"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "-678C", "-679A", "C684-", "A685-", "G686-", "G3825A", "T4717A", "-5799G", "T5801C", "G5802A", "A5806C", "C5808T", "-6214A", "G6311A", "A6776G", "C6777A", "C6856T", "-6983A", "G7040A", "A7133G", "C7134T", "C7170T", "C7755A", "A8099G", "-8375T", "G8388A", "T8425A", "A8469G", "T8690C", "T8746A", "G8786A"], "INT": ["S17N"], "gp120": ["V153I", "T308E", "V396I", "T427V", "T439I"], "gp41": ["A151E", "I266V"], "nef": ["V16I", "I43V", "F135Y"], "rev": ["D84G"], "vif": ["F44Y", "R127G"]}, "labels": {"aa": "INT: S17N; gp120: V153I, T308E, V396I, T427V, T439I; gp41: A151E, I266V; nef: V16I, I43V, F135Y; rev: D84G; vif: F44Y, R127G"}}, "children": [{"name": "FJ670522", "node_attrs": {"div": 0.16505999999999998, "accession": "FJ670522", "clade_membership": {"value": "CRF14_BG"}, "country": {"value": "ES"}, "date": {"value": 2005.0}, "Strain_name": {"value": "X1870"}, "LANL_subtype": {"value": "CRF14_BG"}}, "branch_attrs": {"mutations": {"nuc": ["-90T", "-102A", "A159T", "A161G", "G162T", "G258T", "A265G", "A286-", "C287-", "T288-", "G292A", "G378T", "A380C", "T503G", "G615A", "A692T", "T694A", "G771C", "T788C", "A803G", "A891C", "C892T", "C897T", "A945G", "C988A", "G1090A", "A1157G", "A1160G", "A1404G", "G1442A", "C1444T", "-1455T", "-1456C", "-1457A", "C1459-", "A1461G", "A1476G", "C1492A", "T1502C", "A1642G", "A1657G", "T1681C", "C1693T", "C1724T", "G1782A", "A1784G", "G1839A", "G1942A", "T1954A", "G1972A", "G2156A", "C2199T", "T2269C", "G2317A", "A2368G", "C2499T", "C2613G", "A2629G", "C2671T", "G2727A", "T2905A", "G2914A", "C2985T", "G3019A", "T3034C", "T3096C", "C3118T", "T3131C", "T3139C", "A3264G", "G3316A", "A3340G", "C3399T", "T3412A", "A3451G", "G3473A", "G3523A", "A3607G", "A3616G", "T3695G", "T3793C", "A3805G", "T3853C", "C3857A", "G3859A", "C3908T", "A3919G", "T4110C", "G4131C", "C4270T", "A4555G", "G4573A", "T4656A", "T4676C", "T4702C", "G4708A", "A4763G", "C4776T", "C4844T", "T4912A", "C4937A", "T4956A", "G4981A", "A4993C", "A5004T", "A5005C", "T5043G", "A5048G", "C5056A", "A5058C", "G5061A", "A5069G", "G5086A", "C5237T", "A5285C", "C5303T", "T5356C", "G5362A", "C5382T", "G5385A", "C5406T", "A5461C", "T5462G", "C5478T", "G5561A", "A5576C", "A5602T", "T5604G", "T5626G", "T5669C", "T5678C", "A5728G", "A5729G", "A5748G", "-5797C", "C5804T", "A5805C", "G5812A", "A5817G", "A5825G", "T5852A", "A5855G", "A5867G", "A5896G", "A5926T", "G5957A", "G6023A", "T6024A", "A6025C", "A6030T", "T6160A", "A6176G", "C6180T", "C6183A", "T6187G", "C6190T", "A6195C", "G6198A", "-6201A", "-6202T", "-6203G", "-6204A", "-6205T", "-6206A", "-6207T", "-6209A", "-6210T", "-6211A", "-6212G", "-6213G", "A6222G", "C6255G", "A6260G", "G6261C", "G6274A", "G6277A", "G6314A", "T6315C", "A6332-", "A6333-", "T6334-", "A6335-", "G6336-", "T6337-", "T6395A", "C6412A", "G6463A", "C6489A", "T6511C", "G6611A", "A6644G", "T6658C", "G6712A", "G6774A", "T6794C", "G6810A", "T6835A", "-6836A", "-6837A", "-6838T", "A6847T", "G6871A", "A6877G", "A6913G", "G6940A", "T6958-", "A6960G", "A6965G", "A6972G", "-6977A", "-6978C", "-6979A", "-6980G", "-6981G", "-6982G", "-6985T", "-6995G", "-6996G", "-6997A", "-6998G", "-6999T", "-7000A", "A7037G", "A7046C", "C7090T", "A7149G", "T7150A", "A7157G", "A7163C", "C7171T", "T7180G", "T7192C", "G7269A", "G7276A", "T7321C", "T7370G", "A7373G", "T7379C", "G7517A", "A7532C", "A7542G", "G7552A", "T7603C", "T7630G", "C7633T", "C7702T", "A7741G", "A7790G", "T7825C", "T7843C", "T7913C", "G7915A", "T7929C", "A8050G", "C8051A", "G8079A", "C8122G", "G8133A", "C8146T", "A8208G", "G8261C", "A8273G", "A8297G", "G8330T", "C8331T", "T8333C", "A8400T", "A8409T", "G8526C", "A8531G", "T8582A", "T8597C", "C8675T", "C8723T", "A8726T", "C8740T", "C8747T", "G8753C", "A8814G", "A8815G", "G8861A", "T8867C", "A8904G", "A8938G", "A8954G", "C9028T", "T9054G"], "INT": ["L28I", "I112T", "S119T"], "RT-p51": ["V21I", "T35I", "T135I", "T173R", "I178M", "S211N", "A297V", "L334P", "Y346H", "K390R", "A435V"], "RT-p66": ["V21I", "T35I", "T135I", "T173R", "I178M", "S211N", "A297V", "L334P", "Y346H", "K390R", "A435V", "D460N", "S534A"], "gp120": ["S1G", "N5D", "A35T", "V57N", "E59V", "N102K", "A109K", "-115D", "-116I", "-117I", "-118G", "-119G", "K123R", "T134S", "S136A", "M141I", "V154T", "N160-", "S161-", "S181T", "T204K", "T212K", "A253T", "I264V", "R307K", "-326K", "-368S", "N369S", "S370A", "T371W", "-372N", "-373G", "-376G", "-377T", "-380T", "-381G", "-382V", "D384-", "I395V", "M398L", "N432R", "N435D", "T436S", "T437S", "R472K"], "gp41": ["S23A", "M24V", "V72M", "K77Q", "Q80R", "D109E", "N163D", "L209P", "S277N", "N302S", "R324G", "I332V", "A343F"], "nef": ["I20L", "T23S", "E62Q", "A83G", "T133I", "K158G", "M173I", "S188G", "H199R", "N201D"], "p1": ["K4R", "N9S"], "p17": ["A15S", "V94I", "M120K"], "p2": ["A7V", "T12S", "I13V"], "p24": ["A14P", "T54L", "T72A", "I83M", "S120N", "S225G"], "p6": ["L1P", "P5L", "V35M"], "p7": ["S4G", "P9Q"], "pro": ["R14K"], "rev": ["I21L", "T68E", "L92V", "P100S"], "tat": ["V29R", "N67T"], "vif": ["L24I", "F39S", "R41K", "L109Q", "D117E", "L124I", "R130S", "R132K", "Q136P", "N140S", "L153V", "T157K", "K158Q", "A159T", "R167K"], "vpr": ["H45Y", "I61L", "I84T", "R86Q", "P93S", "G94S"], "vpu": ["P3S", "I24T", "R41G", "A65V", "T66L", "L67M", "V69-", "D73G", "L82*", "*83W"]}, "labels": {"aa": "INT: L28I, I112T, S119T; RT-p51: V21I, T35I, T135I, T173R, I178M, S211N, A297V, L334P, Y346H, K390R, A435V; RT-p66: V21I, T35I, T135I, T173R, I178M, S211N, A297V, L334P, Y346H, K390R, A435V, D460N, S534A; gp120: S1G, N5D, A35T, V57N, E59V, N102K, A109K, -115D, -116I, -117I, -118G, -119G, K123R, T134S, S136A, M141I, V154T, N160-, S161-, S181T, T204K, T212K, A253T, I264V, R307K, -326K, -368S, N369S, S370A, T371W, -372N, -373G, -376G, -377T, -380T, -381G, -382V, D384-, I395V, M398L, N432R, N435D, T436S, T437S, R472K; gp41: S23A, M24V, V72M, K77Q, Q80R, D109E, N163D, L209P, S277N, N302S, R324G, I332V, A343F; nef: I20L, T23S, E62Q, A83G, T133I, K158G, M173I, S188G, H199R, N201D; p1: K4R, N9S; p17: A15S, V94I, M120K; p2: A7V, T12S, I13V; p24: A14P, T54L, T72A, I83M, S120N, S225G; p6: L1P, P5L, V35M; p7: S4G, P9Q; pro: R14K; rev: I21L, T68E, L92V, P100S; tat: V29R, N67T; vif: L24I, F39S, R41K, L109Q, D117E, L124I, R130S, R132K, Q136P, N140S, L153V, T157K, K158Q, A159T, R167K; vpr: H45Y, I61L, I84T, R86Q, P93S, G94S; vpu: P3S, I24T, R41G, A65V, T66L, L67M, V69-, D73G, L82*, *83W"}}}, {"name": "AF450097", "node_attrs": {"div": 0.15929, "accession": "AF450097", "clade_membership": {"value": "CRF14_BG"}, "country": {"value": "ES"}, "date": {"value": 2000.0}, "Strain_name": {"value": "X623"}, "LANL_subtype": {"value": "CRF14_BG"}}, "branch_attrs": {"mutations": {"nuc": ["A166-", "C217T", "G354A", "A388G", "G424A", "A461T", "C540A", "G607A", "G659A", "G690A", "A716G", "G977A", "A978C", "A1070G", "A1079T", "A1089G", "A1208G", "-1458A", "-1460A", "A1474G", "A1494G", "T1502G", "C1610A", "G1673A", "G1695A", "A1775G", "A1777G", "A1784T", "T1873C", "A2182G", "A2203C", "A2293G", "G2463A", "C2613T", "G2683A", "A2699G", "A2714G", "A2715G", "A2821G", "G2837A", "C2941A", "G3188A", "A3205C", "G3206C", "C3334T", "A3378G", "A3379G", "A3532G", "A3739G", "G3866A", "T3904C", "T3967C", "G4145A", "C4146G", "T4207C", "T4234A", "G4262A", "G4263C", "A4405T", "A4407G", "G4561A", "G4583C", "A4682T", "G4695C", "T4703C", "C4728A", "A4774C", "T4827C", "G4855T", "G4856A", "A4865C", "T4890C", "T4976G", "A5059G", "G5225A", "A5246T", "T5286C", "C5342T", "A5355T", "T5357G", "A5448C", "A5461G", "C5548A", "G5556C", "T5614C", "A5622G", "A5656C", "A5680C", "T5685C", "A5699G", "A5728C", "-5797T", "G5803A", "C5804A", "A5864G", "G5893A", "G5954A", "A5955T", "T5964C", "A6030G", "A6130G", "T6151C", "T6170G", "A6177C", "C6180A", "A6192C", "A6195G", "G6198T", "A6200-", "A6208-", "-6212C", "-6213T", "A6215G", "T6216A", "G6217A", "G6218A", "A6219T", "T6301C", "A6319G", "G6430A", "A6465C", "A6577C", "A6602T", "A6637G", "C6640G", "A6684G", "G6688C", "G6714A", "G6743A", "A6753G", "A6754T", "A6767C", "G6774C", "A6780G", "A6789C", "G6797A", "G6802A", "-6830G", "-6831G", "-6832G", "G6858A", "T6919C", "C6922T", "C6935A", "-6956A", "-6957C", "A6962G", "T6964A", "T6968A", "G6969C", "G6970A", "-6985A", "C6993A", "-7004G", "-7005A", "-7006C", "-7007A", "-7008C", "-7009A", "G7026A", "A7093T", "C7153T", "T7156C", "A7157-", "A7158-", "T7159-", "A7160G", "G7291A", "A7309G", "T7328A", "C7400T", "G7508A", "G7628A", "C7633A", "G7734A", "G7769A", "A7835G", "A7996C", "A8006G", "T8008G", "G8032A", "G8038T", "A8050C", "A8173G", "A8272T", "A8288T", "G8303A", "T8304G", "T8335G", "T8336C", "G8458A", "G8487T", "G8502A", "A8525G", "G8588A", "G8590C", "C8651T", "A8652C", "T8758A", "C8809A", "T8810A", "T8831C", "A8863G", "C8869G", "G8876T", "T9045C"], "INT": ["V31I", "A124S", "G163T", "K211R", "D270H"], "RT-p51": ["E36D", "S123N", "T173I", "I202V", "K207G", "D248N", "V365I", "E370D", "V371L", "Q428R"], "RT-p66": ["E36D", "S123N", "T173I", "I202V", "K207G", "D248N", "V365I", "E370D", "V371L", "Q428R"], "gp120": ["N4D", "D34I", "V37A", "E59G", "F106V", "N108T", "A109D", "N113T", "N114S", "-120I", "M121L", "E241D", "T250S", "D262E", "K277R", "R278S", "R287K", "D297N", "K300S", "I305L", "R307T", "K309R", "N312T", "G315R", "E319G", "-326G", "R335H", "Q361K", "-368T", "S370G", "-372T", "-373N", "-376N", "-377N", "N379-", "-385T", "R391K", "N435-", "T436E"], "gp41": ["F9I", "V69I", "D109N", "D110E", "R144K", "A156T", "I178V", "K231N", "I235V", "Q323H", "I329F", "V334R"], "nef": ["G29A", "R39K", "A49S", "D54N", "K104Q", "F139Y", "A156E", "E174G", "A176G", "K178N"], "p17": ["V7I", "K18R", "R30K", "E42D", "Q69K", "R91K", "A119T"], "p24": ["I83L", "Q86P", "S120G"], "p6": ["E6K", "K33R"], "p7": ["K3R", "R10G", "N12K", "D48E"], "rev": ["D11E", "R14T", "H53R", "S54A", "A62T", "V64L", "I109V"], "tat": ["K24N", "P58T", "Q60H"], "vif": ["G37R", "H48N", "K63T", "R90I", "R93S", "K158R"], "vpr": ["G41S", "N48Y", "I61T", "I84L"], "vpu": ["A7S", "I17L", "I25L", "K31R", "R41Q", "T66K"]}, "labels": {"aa": "INT: V31I, A124S, G163T, K211R, D270H; RT-p51: E36D, S123N, T173I, I202V, K207G, D248N, V365I, E370D, V371L, Q428R; RT-p66: E36D, S123N, T173I, I202V, K207G, D248N, V365I, E370D, V371L, Q428R; gp120: N4D, D34I, V37A, E59G, F106V, N108T, A109D, N113T, N114S, -120I, M121L, E241D, T250S, D262E, K277R, R278S, R287K, D297N, K300S, I305L, R307T, K309R, N312T, G315R, E319G, -326G, R335H, Q361K, -368T, S370G, -372T, -373N, -376N, -377N, N379-, -385T, R391K, N435-, T436E; gp41: F9I, V69I, D109N, D110E, R144K, A156T, I178V, K231N, I235V, Q323H, I329F, V334R; nef: G29A, R39K, A49S, D54N, K104Q, F139Y, A156E, E174G, A176G, K178N; p17: V7I, K18R, R30K, E42D, Q69K, R91K, A119T; p24: I83L, Q86P, S120G; p6: E6K, K33R; p7: K3R, R10G, N12K, D48E; rev: D11E, R14T, H53R, S54A, A62T, V64L, I109V; tat: K24N, P58T, Q60H; vif: G37R, H48N, K63T, R90I, R93S, K158R; vpr: G41S, N48Y, I61T, I84L; vpu: A7S, I17L, I25L, K31R, R41Q, T66K"}}}]}, {"name": "CRF14_BG_NODE_0000002", "node_attrs": {"div": 0.13720999999999997, "clade_membership": {"value": "CRF14_BG"}}, "branch_attrs": {"mutations": {"nuc": ["A680-", "C2263T", "T2860C", "A3457G", "G3816A", "A4694G", "T4701A", "A4781G", "T5798-", "G5800T", "-5809C", "-5810T", "-5811T", "-6201G", "-6956T", "G7275A", "A7590C"], "INT": ["R14K"], "gp120": ["-115S", "-116S", "-372W", "R474K"], "gp41": ["N96T"], "nef": ["E28V"], "vif": ["F39I"]}, "labels": {"aa": "INT: R14K; gp120: -115S, -116S, -372W, R474K; gp41: N96T; nef: E28V; vif: F39I"}}, "children": [{"name": "GU230137", "node_attrs": {"div": 0.15535999999999997, "accession": "GU230137", "clade_membership": {"value": "CRF14_BG"}, "country": {"value": "PT"}, "date": {"value": 2000.0}, "Strain_name": {"value": "00PTHDE10"}, "LANL_subtype": {"value": "CRF14_BG"}}, "branch_attrs": {"mutations": {"nuc": ["C362A", "G398A", "C426A", "G527A", "A576G", "A605C", "A650G", "G696A", "C707T", "C765T", "T890C", "G980A", "T1063C", "T1421G", "G1443A", "G1451A", "-1455G", "-1456C", "-1457A", "C1459-", "A1476G", "A1494G", "T1502G", "C1556T", "A1607G", "C1682T", "A1762G", "A1776C", "G1782T", "T1783C", "A1834C", "G1839A", "G1886A", "A1932C", "A1934G", "G1936A", "A2051G", "A2063G", "A2216T", "G2287A", "A2290G", "G2294A", "A2304G", "A2368G", "T2393C", "A2461G", "G2463A", "G2530A", "C2613T", "A2641G", "C2720T", "A2738T", "C2739A", "A2750G", "A2752G", "A2926G", "T3096C", "A3279G", "C3346T", "T3449C", "C3500T", "G3523A", "A3637G", "A4629C", "G4642A", "G4689A", "A4725G", "G4786A", "G4949A", "G4965A", "G4981A", "T5043G", "T5047C", "A5187T", "T5260C", "A5285C", "T5412C", "A5448C", "T5462A", "A5494C", "C5611A", "A5612G", "A5613C", "A5619G", "C5627A", "T5685C", "T5807C", "A5817C", "G6020A", "G6029A", "G6059A", "A6159C", "C6190T", "-6202T", "-6203A", "-6204G", "-6205C", "-6206C", "-6207T", "-6209G", "-6210A", "-6211A", "-6212A", "-6213T", "-6214A", "C6253T", "T6295A", "G6368A", "C6412A", "G6430T", "T6511C", "A6535G", "A6538C", "A6577G", "A6593G", "G6647A", "T6694C", "G6809A", "G6810C", "G6819A", "-6830G", "-6831T", "-6832G", "G6905A", "A6926G", "C6933A", "A6945C", "C6946T", "A6947T", "T6949G", "C6951T", "T6952-", "T6953-", "G6954-", "-6957T", "A6974G", "C6975T", "C6984-", "A6986-", "A6987-", "T6988-", "A6989-", "A6990-", "C6991-", "-6995A", "-6996C", "-6997A", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "-7006C", "-7007A", "-7008C", "-7009A", "A7093G", "C7105T", "G7152A", "A7157G", "A7158G", "A7161C", "G7162C", "G7269A", "A7309G", "G7324A", "A7348T", "G7628A", "A7640C", "A7898C", "G7997A", "G8001A", "A8132C", "G8133T", "G8184A", "C8213T", "A8221T", "A8222T", "T8278A", "A8288G", "C8293T", "T8321G", "T8322C", "T8332C", "G8349A", "G8350A", "C8364-", "G8365-", "T8366-", "T8367-", "C8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "C8382A", "T8384G", "C8455A", "A8527G", "G8590C", "A8814G", "A8815G", "A8834G", "G8943A", "T8945C", "C8951T"], "INT": ["Q285P"], "RT-p51": ["M41L", "D67N", "K70R", "S123N", "T173I", "T215Y", "K219E", "L334P", "K395R"], "RT-p66": ["M41L", "D67N", "K70R", "S123N", "T173I", "T215Y", "K219E", "L334P", "K395R"], "gp120": ["V56I", "E59K", "E69K", "N102T", "-117S", "-118L", "-119E", "-120I", "V172I", "T204K", "K247E", "E265K", "E319T", "R322K", "-326V", "G351R", "N358D", "T360K", "N364-", "S365-", "-368F", "T374-", "T375-", "N378-", "-380V", "-381T", "-382T", "-383N", "-385T", "S433N", "N435G", "R472K"], "gp41": ["D109N", "N113H", "K199Q", "D232N", "R233K", "S277H", "R294Q", "L304F", "I307L", "I329V", "L340A", "L344F"], "nef": ["G3N", "R8-", "S9-", "I10-", "V11-", "P14T", "A38D", "E62G", "K158G"], "p17": ["S9R", "L31M", "T81A", "Q90H", "D121N"], "p2": ["A7-", "S8T", "G9S", "-10G", "T12A"], "p24": ["H12Y", "Q86P", "L111P"], "p6": ["Q28R", "K33Q", "V35S", "Q52P"], "p7": ["S4G", "R10G", "N12K"], "pro": ["R14K", "D30N", "K45T", "M46V", "I85V", "M89V"], "rev": ["R50K", "Q95P"], "tat": ["K24N", "V29K", "N40H"], "vif": ["R19K", "A35T", "R47G", "R67K", "R130S", "R132K", "L153V", "V154A"], "vpr": ["N28I", "I61L"], "vpu": ["Q2S", "P3S", "A7Y", "R41K", "E70D"]}, "labels": {"aa": "INT: Q285P; RT-p51: M41L, D67N, K70R, S123N, T173I, T215Y, K219E, L334P, K395R; RT-p66: M41L, D67N, K70R, S123N, T173I, T215Y, K219E, L334P, K395R; gp120: V56I, E59K, E69K, N102T, -117S, -118L, -119E, -120I, V172I, T204K, K247E, E265K, E319T, R322K, -326V, G351R, N358D, T360K, N364-, S365-, -368F, T374-, T375-, N378-, -380V, -381T, -382T, -383N, -385T, S433N, N435G, R472K; gp41: D109N, N113H, K199Q, D232N, R233K, S277H, R294Q, L304F, I307L, I329V, L340A, L344F; nef: G3N, R8-, S9-, I10-, V11-, P14T, A38D, E62G, K158G; p17: S9R, L31M, T81A, Q90H, D121N; p2: A7-, S8T, G9S, -10G, T12A; p24: H12Y, Q86P, L111P; p6: Q28R, K33Q, V35S, Q52P; p7: S4G, R10G, N12K; pro: R14K, D30N, K45T, M46V, I85V, M89V; rev: R50K, Q95P; tat: K24N, V29K, N40H; vif: R19K, A35T, R47G, R67K, R130S, R132K, L153V, V154A; vpr: N28I, I61L; vpu: Q2S, P3S, A7Y, R41K, E70D"}}}, {"name": "CRF14_BG_NODE_0000003", "node_attrs": {"div": 0.14446999999999996, "clade_membership": {"value": "CRF14_BG"}}, "branch_attrs": {"mutations": {"nuc": ["A286G", "C473T", "G740A", "C845T", "A920G", "C988A", "C1078G", "A1441T", "-1458A", "-1460A", "A1622C", "C1623A", "C1724T", "T2071A", "A2407G", "T2488C", "G2518A", "G2602A", "C2953T", "A3268G", "G3316A", "A3378G", "T3380C", "T3412A", "T3644G", "A3907G", "A4405G", "A4872T", "A5159G", "C5397T", "T5442C", "G5463A", "T5626G", "A5729G", "A5867G", "G5872A", "A5962G", "A6131G", "-6202C", "-6203C", "-6204T", "-6205A", "-6206G", "-6207A", "-6209A", "-6210T", "-6211G", "G6277A", "G6401A", "A6402C", "T6551C", "G6688A", "T6720G", "C6856G", "G6871A", "-6957C", "-6977A", "-6978C", "-6979A", "-6980G", "-6981A", "-6982G", "-6985A", "G7055A", "A7148G", "A7149G", "C7174T", "G7782A", "A7791G", "C8062T", "G8098A", "A8222G", "C8296T", "A8312C", "T8333C", "-8375A", "G8458A", "T8483C", "G8589A", "C8825T", "G8876T", "A8967T"], "RT-p51": ["Q428R"], "RT-p66": ["Q428R", "L517I"], "gp120": ["N5D", "K93E", "-117L", "-118E", "-119M", "E183T", "L289W", "N334K", "-380T", "E401K", "N432G", "T437N"], "gp41": ["S160N", "N163S", "I307V"], "nef": ["R39K", "A83S", "K178N"], "p2": ["Q6L"], "p24": ["T116R"], "p7": ["R52S", "Q53K"], "rev": ["P72S", "D84N"], "tat": ["V29I"], "vif": ["T96S"], "vpr": ["T19A"]}, "labels": {"aa": "RT-p51: Q428R; RT-p66: Q428R, L517I; gp120: N5D, K93E, -117L, -118E, -119M, E183T, L289W, N334K, -380T, E401K, N432G, T437N; gp41: S160N, N163S, I307V; nef: R39K, A83S, K178N; p2: Q6L; p24: T116R; p7: R52S, Q53K; rev: P72S, D84N; tat: V29I; vif: T96S; vpr: T19A"}}, "children": [{"name": "FJ670528", "node_attrs": {"div": 0.16506999999999997, "accession": "FJ670528", "clade_membership": {"value": "CRF14_BG"}, "country": {"value": "ES"}, "date": {"value": 2005.0}, "Strain_name": {"value": "X772_8"}, "LANL_subtype": {"value": "CRF14_BG"}}, "branch_attrs": {"mutations": {"nuc": ["G88-", "A89-", "T91-", "G92-", "C93-", "T94-", "T95-", "C96-", "A97-", "A98-", "G99-", "T100-", "A101-", "G104-", "T105-", "A388G", "G428A", "C482A", "G519A", "A521T", "G562A", "A604T", "A613G", "A629G", "C718T", "G837A", "C897T", "G980A", "G1090A", "A1115C", "A1461G", "T1462C", "A1588G", "G1619A", "C1712A", "G1782A", "A1784G", "T2149C", "A2203C", "C2211T", "A2508C", "T2854G", "G2914A", "G2984A", "T3181G", "G3206C", "G3523A", "A3539G", "A3545T", "C3567T", "C3600T", "G3644A", "C3649T", "A3796G", "A3949T", "C3995T", "A4048C", "A4076C", "G4354A", "G4782A", "G4861A", "G4952A", "G4965A", "A5154C", "C5237T", "G5535A", "A5537C", "A5563G", "T5614C", "A5621G", "T5645C", "A5658C", "G5659T", "C5660T", "T5678C", "C5756A", "G5768C", "A5774G", "C5778T", "T5807C", "T5819G", "G5824T", "C5826T", "T5851C", "G5858A", "T5861G", "A5864G", "T5866A", "T5871C", "A5938G", "C5958A", "T5964C", "A5965C", "A5981C", "C6007T", "G6023C", "A6159C", "T6170A", "T6171G", "T6175C", "G6179A", "A6182G", "A6188G", "A6195G", "-6212A", "-6213T", "-6214G", "G6217A", "T6252C", "A6260G", "G6261A", "T6276C", "A6282G", "C6317A", "A6320T", "C6325A", "A6332-", "A6333-", "T6334-", "A6335-", "G6336-", "T6337-", "G6368A", "C6375A", "G6392A", "G6466A", "C6607A", "G6611A", "A6616C", "G6631C", "A6637C", "C6641T", "A6688T", "A6689G", "A6695T", "A6751G", "C6777T", "A6779C", "G6810A", "T6828A", "-6830A", "-6831G", "-6832G", "C6857A", "T6888C", "G6889A", "C6935G", "A6962G", "T6968C", "A6974G", "C6975G", "-6983G", "A6992T", "-6995G", "-6996T", "-6997G", "G7089A", "C7090A", "A7095T", "T7117C", "G7126A", "A7151G", "C7153T", "T7159C", "A7160G", "A7163T", "G7168A", "C7170T", "A7255G", "G7291A", "C7305G", "T7308C", "C7320T", "T7328C", "A7373C", "A7428G", "G7549A", "C7574A", "A7589G", "G7608C", "G7631T", "G7668A", "G7689A", "A7693T", "G7720A", "G7734A", "T7762C", "T7789G", "A7818G", "G8001A", "T8008A", "C8009A", "G8032A", "C8037T", "G8130A", "A8173G", "T8277C", "G8328T", "A8338G", "G8388A", "A8397C", "A8465G", "A8469G", "G8502A", "A8503G", "A8584T", "A8623T", "A8663G", "C8812A", "A8816G", "A8837G", "G8852A", "A8893G", "A8922C", "T8945G", "T8967C", "T9054G"], "INT": ["I101L"], "RT-p51": ["E36D", "T39I", "E138A", "A297T", "V371L"], "RT-p66": ["E36D", "T39I", "E138A", "A297T", "V371L", "I482V", "I484L", "S491L", "A502V"], "gp120": ["A2T", "S3A", "N4E", "L6S", "A35E", "V37A", "T43P", "V57L", "N102T", "F106A", "N108L", "A109N", "T112A", "N114S", "-120M", "M121I", "I133T", "S136D", "M141T", "K143R", "Q155K", "M156L", "N160-", "S161-", "V172I", "T174K", "V180I", "D251E", "A253T", "K254N", "Q259H", "K261N", "P263S", "R278S", "I279V", "M281L", "T308I", "K309Q", "F325Y", "-326R", "R335S", "M345T", "Q361E", "N369-", "S370-", "T371-", "-373S", "T374N", "T375G", "-376T", "-377R", "N379G", "-381E", "-382A", "-383N", "-385S", "S412K", "Q414L", "S433G", "T436E", "N437S", "T439I"], "gp41": ["A1G", "V2A", "A6V", "F9L", "M24L", "N42S", "L91I", "T96A", "S102T", "D110Y", "R122K", "G129D", "L130F", "R144K", "F162L", "K172R", "R233K", "A245V", "S277L", "V325A", "R342I"], "nef": ["V16I", "I43V", "Y81F", "K94M", "T157N", "K184R", "I194L", "N201E"], "p17": ["K18R", "D49E", "G62S", "R76K", "Q90L", "E93G", "A128V"], "p2": ["I13A"], "p24": ["V36I", "S120N", "E128D"], "p6": ["V35M"], "p7": ["K41R"], "rev": ["S7N", "T8P", "S54K", "A62T", "I109V"], "tat": ["H54P", "K63E"], "vif": ["V66I", "R92K", "R130S", "N190H"], "vpr": ["E17A", "H45Y"], "vpu": ["I13T", "A18L", "I24T", "G54A", "E56G", "M71R", "D73Y"]}, "labels": {"aa": "INT: I101L; RT-p51: E36D, T39I, E138A, A297T, V371L; RT-p66: E36D, T39I, E138A, A297T, V371L, I482V, I484L, S491L, A502V; gp120: A2T, S3A, N4E, L6S, A35E, V37A, T43P, V57L, N102T, F106A, N108L, A109N, T112A, N114S, -120M, M121I, I133T, S136D, M141T, K143R, Q155K, M156L, N160-, S161-, V172I, T174K, V180I, D251E, A253T, K254N, Q259H, K261N, P263S, R278S, I279V, M281L, T308I, K309Q, F325Y, -326R, R335S, M345T, Q361E, N369-, S370-, T371-, -373S, T374N, T375G, -376T, -377R, N379G, -381E, -382A, -383N, -385S, S412K, Q414L, S433G, T436E, N437S, T439I; gp41: A1G, V2A, A6V, F9L, M24L, N42S, L91I, T96A, S102T, D110Y, R122K, G129D, L130F, R144K, F162L, K172R, R233K, A245V, S277L, V325A, R342I; nef: V16I, I43V, Y81F, K94M, T157N, K184R, I194L, N201E; p17: K18R, D49E, G62S, R76K, Q90L, E93G, A128V; p2: I13A; p24: V36I, S120N, E128D; p6: V35M; p7: K41R; rev: S7N, T8P, S54K, A62T, I109V; tat: H54P, K63E; vif: V66I, R92K, R130S, N190H; vpr: E17A, H45Y; vpu: I13T, A18L, I24T, G54A, E56G, M71R, D73Y"}}}, {"name": "AF450096", "node_attrs": {"div": 0.15173999999999996, "accession": "AF450096", "clade_membership": {"value": "CRF14_BG"}, "country": {"value": "ES"}, "date": {"value": 2000.0}, "Strain_name": {"value": "X605"}, "LANL_subtype": {"value": "CRF14_BG"}}, "branch_attrs": {"mutations": {"nuc": ["G158A", "C281-", "G282-", "G283-", "A500T", "T536G", "G607A", "A675C", "T694G", "A1404G", "G1495A", "A1525G", "G1673A", "C1826A", "T2093C", "C2605T", "T3271C", "C3499A", "A3544G", "A4219T", "A4725G", "G4966A", "T4976A", "A5005C", "A5560G", "G5561A", "A5564G", "G5565A", "T6024C", "A6192T", "T6276G", "G6303A", "A6465C", "G6572A", "C6640G", "G6774A", "G6809A", "A6834T", "T6835G", "-6836A", "-6837A", "-6838T", "A6854C", "T6885A", "-6983A", "-7004G", "-7005A", "-7006C", "-7007C", "-7008T", "-7009A", "G7072T", "A7093G", "C7134T", "T7156C", "A7161C", "G7162T", "C7164A", "G7508A", "A7732G", "C7755A", "T7758G", "A7772G", "A8023G", "C8232T", "G8264A", "G8276A", "A8288G", "G8323C", "C8364T", "G8398A", "C8534A", "C8581A", "G8799A", "T8810C", "G8943A"], "INT": ["Q148H"], "RT-p66": ["I517V"], "gp120": ["V57A", "M141R", "S150N", "E240K", "D262E", "R307K", "E319R", "-326M", "K334Q", "V344E", "-368R", "-373N", "-376E", "-377T", "-385L", "M406I", "T427I"], "gp41": ["V69I", "A151E", "L152W", "S157G", "A310V", "V321I", "V325I", "I329V", "L340F"], "nef": ["R8C", "R19K", "D64E", "T80N", "V153I"], "p17": ["E55D", "R91K", "K114Q", "M120R"], "p24": ["I83M", "S225G"], "p7": ["R10K", "K20R"], "pro": ["L10I", "F99L"], "rev": ["V16I", "R17E", "I59V"], "tat": ["S62D", "K63R"], "vif": ["R47G", "R127E", "N140T"], "vpu": ["T66I"]}, "labels": {"aa": "INT: Q148H; RT-p66: I517V; gp120: V57A, M141R, S150N, E240K, D262E, R307K, E319R, -326M, K334Q, V344E, -368R, -373N, -376E, -377T, -385L, M406I, T427I; gp41: V69I, A151E, L152W, S157G, A310V, V321I, V325I, I329V, L340F; nef: R8C, R19K, D64E, T80N, V153I; p17: E55D, R91K, K114Q, M120R; p24: I83M, S225G; p7: R10K, K20R; pro: L10I, F99L; rev: V16I, R17E, I59V; tat: S62D, K63R; vif: R47G, R127E, N140T; vpu: T66I"}}}]}]}]}, {"name": "NODE_0000537", "node_attrs": {"div": 0.12158999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-304C", "A386G", "A516C", "G520A", "A521C", "G542A", "A563G", "A654T", "C679T", "A680G", "G683A", "A697G", "A759C", "T760C", "G761A", "G762A", "A785G", "A905C", "T983C", "A989G", "C1013T", "A1025G", "G1064A", "C1175A", "T1322C", "A1404G", "G1430A", "C1444T", "A1486-", "C1514T", "A1644C", "A1656C", "G1664A", "C1712T", "C1768A", "A1775G", "G1781C", "T1783-", "A1784-", "T1785-", "A1786-", "T1787-", "C1788-", "C1789-", "T1790-", "G1794A", "C1795T", "A2119G", "G2155A", "T2158G", "A2198G", "C2199T", "A2273G", "G2317A", "T2380C", "G2463A", "C2464T", "G2473A", "T2479A", "T2575C", "A2579T", "C2605T", "C2613A", "A2615C", "G2632T", "C2635T", "C2638T", "G2707A", "T2708C", "A2710G", "G2714C", "A2728G", "A2821G", "A2925G", "C2968A", "A2969G", "T2983A", "G2984A", "A2995G", "T2996C", "G2998A", "T3034A", "C3046G", "G3080A", "A3088G", "A3091G", "T3096A", "A3099G", "G3127A", "A3132T", "C3133T", "A3154G", "A3162G", "G3165T", "G3167A", "G3168A", "G3169A", "T3170A", "C3171G", "A3196G", "A3205G", "T3207C", "C3223A", "A3224C", "C3225A", "G3229A", "C3266T", "G3276A", "C3303T", "A3304G", "A3307G", "C3319T", "T3358C", "C3359T", "T3376C", "A3385G", "C3387A", "C3399T", "G3439A", "A3442G", "T3496C", "A3508C", "C3517T", "A3520G", "A3529G", "C3559T", "C3567T", "A3583G", "G3595A", "G3630A", "G3631A", "A3643G", "A3651G", "C3668T", "C3688T", "G3694A", "T3695G", "A3880G", "A4090T", "A4130C", "G4131C", "C4140T", "C4381T", "T4702G", "G4727A", "T4742C", "A4751G", "T4769C", "G4779A", "G4855A", "A4863G", "G4864A", "G4923A", "G4949A", "T5147C", "A5176G", "T5356G", "C5359T", "C5478T", "A5555C", "A5616G", "T5617C", "T5626G", "C5641T", "A5677G", "T5688C", "A5727T", "A5729G", "T5739A", "C5834A", "T5844G", "A5962G", "A5965C", "C5989G", "A6023C", "T6091C", "C6097T", "C6115T", "A6262G", "A6266C", "G6267A", "A6268G", "G6274A", "A6281C", "A6316G", "A6394G", "C6403T", "T6436G", "G6442A", "G6451A", "A6461G", "A6464G", "C6545T", "T6562C", "G6572A", "A6574G", "A6583G", "T6599C", "A6617G", "G6638A", "C6642G", "A6685G", "A6692G", "-6697T", "C6758T", "A6764G", "A6765T", "T6766G", "G6771A", "T6794C", "A6799G", "A6818G", "G6819C", "A6820T", "T6828A", "-6830A", "-6831A", "-6832C", "T6838C", "C6850A", "A6855G", "T6860C", "T6863A", "-6953A", "-6954A", "A7036G", "C7127A", "T7130A", "T7153G", "-7165T", "C7170T", "G7182C", "T7192C", "A7396G", "T7537C", "A7553C", "G7628A", "G7633A", "T7642C", "A7666G", "T7774C", "T7775C", "A7782C", "T7843C", "G7868A", "T7912C", "T7929A", "A7984C", "G8030C", "C8092A", "A8093C", "C8146T", "A8222G", "G8255A", "G8264A", "C8277G", "T8278A", "G8280T", "A8288T", "C8293G", "A8294C", "A8323T", "A8329G", "T8332G", "T8333C", "G8349A", "G8354A", "C8369-", "A8370-", "A8372-", "G8373-", "T8374-", "A8405G", "T8582C", "G8590C", "T8741A", "A8816T", "C8840T", "A8870T", "C8873A", "C9014T", "G9015A", "G9016A", "C9181T"], "INT": ["S119P", "T122I"], "RT-p51": ["T35V", "I60V", "S162C", "T173K", "K174Q", "E207Q", "K277R", "D291E", "I292V", "A297T", "V329I", "D335G", "Y346F", "K356R", "R357M", "G358K", "V371A", "T377Q", "T403M", "D413E", "T431K"], "RT-p66": ["T35V", "I60V", "S123D", "S162C", "T173K", "K174Q", "E207Q", "K277R", "D291E", "I292V", "A297T", "V329I", "D335G", "Y346F", "K356R", "R357M", "G358K", "V371A", "T377Q", "R394Q", "T403M", "D413E", "T431K", "E471D", "S491L", "R512K", "N519S", "S534A"], "gp120": ["T57P", "E125-", "R138Q", "K143Q", "K203E", "N204E", "E240K", "V243M", "I249L", "E262K", "R280G", "H302Y", "N304V", "S306N", "F325-", "K329-", "T330-", "N334S", "S335P", "S336P", "S337T", "K418V", "L425I", "L426I", "T439I", "G443A"], "gp41": ["I84L", "D109N", "N160T", "A189T", "L209H", "A243P", "F263L", "I264L", "I307V", "V318I", "V321I", "A325G", "C326F", "I329F", "N331H"], "nef": ["G3N", "S9-", "I10-", "V11-", "E28V", "D177E"], "p1": ["I5L", "N9H"], "p17": ["M61L", "K62N", "I107L", "T115M", "M120T", "D121G"], "p2": ["A7V", "A12S"], "p24": ["M10P", "V11I", "S225G"], "p6": ["P30E", "K33-", "E34-", "L35-", "Y36-", "P37-", "A39I"], "rev": ["R14Q", "S61T", "H82T", "P100S"], "tat": ["Q60P", "L74I"], "vif": ["F39C", "V65I", "R90K", "R93E", "D113N", "Q127E"], "vpr": ["Y15H", "I84S", "P85L"], "vpu": ["P3S", "T24A", "E40D", "D44E", "E62D", "E70D", "P76H"]}, "labels": {"aa": "INT: S119P, T122I; RT-p51: T35V, I60V, S162C, T173K, K174Q, E207Q, K277R, D291E, I292V, A297T, V329I, D335G, Y346F, K356R, R357M, G358K, V371A, T377Q, T403M, D413E, T431K; RT-p66: T35V, I60V, S123D, S162C, T173K, K174Q, E207Q, K277R, D291E, I292V, A297T, V329I, D335G, Y346F, K356R, R357M, G358K, V371A, T377Q, R394Q, T403M, D413E, T431K, E471D, S491L, R512K, N519S, S534A; gp120: T57P, E125-, R138Q, K143Q, K203E, N204E, E240K, V243M, I249L, E262K, R280G, H302Y, N304V, S306N, F325-, K329-, T330-, N334S, S335P, S336P, S337T, K418V, L425I, L426I, T439I, G443A; gp41: I84L, D109N, N160T, A189T, L209H, A243P, F263L, I264L, I307V, V318I, V321I, A325G, C326F, I329F, N331H; nef: G3N, S9-, I10-, V11-, E28V, D177E; p1: I5L, N9H; p17: M61L, K62N, I107L, T115M, M120T, D121G; p2: A7V, A12S; p24: M10P, V11I, S225G; p6: P30E, K33-, E34-, L35-, Y36-, P37-, A39I; rev: R14Q, S61T, H82T, P100S; tat: Q60P, L74I; vif: F39C, V65I, R90K, R93E, D113N, Q127E; vpr: Y15H, I84S, P85L; vpu: P3S, T24A, E40D, D44E, E62D, E70D, P76H"}}, "children": [{"name": "results/subtype_trees/CRF24_BG.nwk", "node_attrs": {"div": 0.13521, "clade_membership": {"value": "CRF24_BG"}}, "branch_attrs": {"mutations": {"nuc": ["C516T", "G524A", "T525C", "T694C", "T731C", "G914A", "T926A", "G1016A", "A1073G", "G1192A", "G1256A", "C1403T", "G1458T", "-1486G", "T1681C", "C1693T", "T2087C", "A2305G", "A2329G", "G2332A", "C2335T", "A2341G", "G2362A", "C2365T", "C2380A", "G2389A", "C2533T", "T2608C", "T2749C", "A2788T", "G2794A", "C2806T", "C2828G", "A2829T", "C2839G", "A2884G", "G3010A", "T3271C", "A3703G", "A3862T", "G4459A", "C4776T", "T4912A", "T4922C", "T4925A", "A4988G", "C5146A", "A5284C", "A5376G", "C5382T", "G5557A", "A5717G", "A5995G", "A6076G", "-6170G", "-6172A", "-6179A", "-6180A", "C6183A", "-6204A", "-6205A", "-6206A", "-6207G", "-6212A", "-6213A", "-6214C", "-6216G", "-6217T", "-6218A", "G6303A", "T6385C", "G6605A", "C6794A", "A6825G", "T6835G", "-6957T", "-6966G", 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"CRF24_BG"}}, "children": [{"name": "FJ670526", "node_attrs": {"div": 0.16616999999999998, "accession": "FJ670526", "clade_membership": {"value": "CRF24_BG"}, "country": {"value": "ES"}, "date": {"value": 2008.0}, "Strain_name": {"value": "X2456_2"}, "LANL_subtype": {"value": "CRF24_BG"}}, "branch_attrs": {"mutations": {"nuc": ["-217T", "A278G", "G279A", "-280G", "C362T", "C393A", "G398A", "A437C", "A461C", "T486C", "A499G", "A548G", "T571A", "G607A", "A619G", "G641T", "A674G", "A678G", "G680A", "A706G", "A761G", "C773T", "T782C", "A806G", "C905T", "A980G", "C988A", "T1037C", "G1090A", "T1094C", "C1137T", "A1193G", "T1220C", "A1359T", "C1439T", "G1443A", "C1541A", "G1543A", "A1580G", "A1614T", "A1670G", "T1676C", "T1722C", "A1765G", "A1770C", "A1771C", "G1778A", "G1839A", "A1841G", "A1861G", "A1990G", "G2158A", "A2179G", "A2233G", "T2236C", "T2335A", "G2387T", "G2459A", "A2498T", "T2542A", "A2569T", "A2627C", "T2632A", "C2644T", "G2686A", "G2725A", "T2737C", "T2778A", "T2779G", 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V10I, T22A, A32S, P57S, E59Q, N102S, -106V, -108S, -109T, -110R, -111N, -112N, -113H, -114V, K127N, I133M, E136D, K141Q, Q143K, V153I, N157S, N160T, S181T, A193P, R201K, K212R, Q218H, E241K, I242V, L249F, T250A, K262E, E265V, N272G, K277R, Q287R, A291T, Y302H, V304I, R307G, E312I, M313T, I314-, Q315-, K316-, V317-, I331-, T332-, P336H, T337S, G361N, -368F, -371N, R401K, T416I, T427S, N432Y, -433E, N435S, T436S, T437G, I439T, K457R; gp41: A14T, E110A, Q130H, T133S, K172R, L191I, I193L, E220G, E224G, P243T, A270G, V271L, E272R, L274-, G275-, R276-, L277-, L304Y; nef: -10V, -11S, G12E, E15R, V33A, E62Q, F120Y, M148V, A151T, K158S, N161T, D176S, E177D, R178K, V182I, R184K, E201D; p17: E42D, E55G, F79Y, R91K, K95R, E102D, M115V, N124S; p2: V7I; p24: I83M, R116T, S120N, T210S; p6: F15L, -26Q, K27G, E29P, E32D; p7: K7R, R26K, T50S; pro: R14K, I15V, I64M; rev: E11D, Q14R, E57Q, T61N, T62S, S89T, G90E, S92-, G93-, T94-, Q95-, I102V; tat: Y26F, T58S, P60Q, K85E, E86K; vif: R4K, G37D, C39W, K63N, E93K, Q105R, I124L, E127D, V129F, R130S, Q136P; vpr: Q44A, L85P, V89R; vpu: G16C, A24T, F27W, D62N"}}}, {"name": "CRF24_BG_NODE_0000001", "node_attrs": {"div": 0.13933, "clade_membership": {"value": "CRF24_BG"}}, "branch_attrs": {"mutations": {"nuc": ["T213C", "T214G", "-217A", "-305T", "C1078G", "G1452A", "G1526A", "T2053C", "T2110C", "G2951A", "C4728A", "T4969A", "G4982T", "G5794A", "-5797C", "-5799T", "A5805C", "-5809G", "-5810G", "-5811G", "T5911C", "A6182C", "-6203G", "-6209A", "-6211C", "-6215A", "C6632T", "-6807A", "-6808A", "C6824A", "T6883C", "-6970G", "-6988T", "-6990A", "-6992A", "-6994T", "G7269A", "T7403C", "G8388A", "A8402G", "A8663G", "T8816G", "A8874G", "A8886G"], "RT-p51": ["A286T"], "RT-p66": ["A286T"], "gp120": ["L260F", "R472K"], "nef": ["V16I", "I20M", "R178G"], "p2": ["A10T"], "p24": ["Q86P"], "p6": ["E30Q", "-33K", "-34D", "-35L", "-36I", "L38-", "I39-"], "vif": ["H48N", "I128K", "R132S"]}, "labels": {"aa": "RT-p51: A286T; RT-p66: A286T; gp120: L260F, R472K; nef: V16I, I20M, R178G; p2: A10T; p24: Q86P; p6: E30Q, -33K, -34D, -35L, -36I, L38-, I39-; vif: H48N, I128K, R132S"}}, "children": [{"name": "AY900574", "node_attrs": {"div": 0.15657000000000001, "accession": "AY900574", "clade_membership": {"value": "CRF24_BG"}, "country": {"value": "CU"}, "date": {"value": 2003.0}, "Strain_name": {"value": "CB378"}, "LANL_subtype": {"value": "CRF24_BG"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "G378T", "G398A", "A417C", "A431G", "C540A", "A613G", "A629T", "G695A", "T782A", "A978G", "T1037C", "G1302A", "A1670G", "G1673A", "T1676C", "A1719-", "G1720-", "C1721-", "T1722-", "T1723-", "C1724-", "G1725-", "G1726-", "G1727-", "T1728-", "T1729-", "C1730-", "G1731-", "G1732-", "A1733-", "G1734-", "A1735-", "G1736-", "A1740G", "T1741A", "A1742G", "G1743A", "C1744T", "C1745A", "-1746G", "-1747C", "-1748C", "T1903G", "A2007G", "T2035C", "G2459A", "T2464A", "A2473G", "T2488C", "A2498G", "T2778A", "T2779G", "C2960T", "A3070G", "T3497C", "A3562G", "G3718A", 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"G37D", "R41K", "D61E", "I124L", "Q136H", "N140S"], "vpr": ["V89L", "D91G"], "vpu": ["V26I"]}, "labels": {"aa": "INT: Y227F, D288N; RT-p51: E122K, D123E, I135V; RT-p66: E122K, D123E, I135V, L228Q, S468P; gp120: E18K, A32S, N105T, -106L, N107K, -125E, L151I, V153I, N159S, N160S, N161S, S162N, T172A, F195Y, T208K, K212R, E239D, E241G, E265D, N272G, G280R, I281F, D294A, V304E, N311E, K316Q, V317I, -318A, -319N, G361K, S365E, N367L, -368L, -377S, -378R, -379N, -380D, -381S, -382K, -383N, -384D, -385T, T387I, A412E, T416R, V418E, N432T, -433N, V460I, K462R, V468I, K472E, G479E; gp41: A14T, I24L, Y75F, D113N, N125D, I135L, N140T, S165T, N166K, H209L, H212R, S256C, G325V, F340L, A343L; nef: N3S, -10V, -11P, P14S, E15V, A49V, Y81F, S88G, F135Y, K158R, C169S; p17: A15S, K28Q, Q69K, E93G, K98N; p24: I83V, V191I; p6: S14-, F15-, G16-, F17-, G18-, E19-, I21E, A22I, P23A, S24P, P25S, -26P; p7: K7R; pro: D35E, K70R; rev: Q14L, V16I, I59V, Q74L, G88S; tat: V36L, N40K, P60L, S62N, I74L, T77A, E86K; vif: V25I, G37D, R41K, D61E, I124L, Q136H, N140S; vpr: V89L, D91G; vpu: V26I"}}}, {"name": "AY900575", "node_attrs": {"div": 0.16205, "accession": "AY900575", "clade_membership": {"value": "CRF24_BG"}, "country": {"value": "CU"}, "date": {"value": 2003.0}, "Strain_name": {"value": "CB471"}, "LANL_subtype": {"value": "CRF24_BG"}}, "branch_attrs": {"mutations": {"nuc": ["C151A", "C160T", "T200C", "A437T", "A499G", "A558C", "G607A", "G608A", "A683G", "A764G", "A774T", "C827T", "A978T", "C1060A", "C1062T", "C1137T", "T1174C", "T1187C", "A1217G", "T1238C", "G1486A", "C1491A", "G1495A", "C1517T", "T1547C", "G1568A", "A1580G", "A1588G", "C1644T", "A1664G", "A1700G", "C2044T", "G2074A", "A2140G", "C2386T", "C2671T", "A2678C", "G2682A", "G2828A", "G2839A", "C2909G", "G2925A", "G2972A", "A2984G", "C3067A", "A3097G", "G3171A", "A3364G", "T3399A", "G3491A", "G3756A", "A3772G", "G3916A", "G3945A", "T4140C", "A4176G", "G4388T", "G4516A", "G4642A", "T4701G", "A4735G", "G4767A", "A4784T", "G4786A", 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"INT: S57N, I122T, D134S, A205S; RT-p51: I195L, G196E, Q228L, V245M, P272A, R277K, V293I, T297A, D324E, S359N, V435E; RT-p66: I195L, G196E, V245M, P272A, R277K, V293I, T297A, D324E, S359N, V435E, V466I, S554N; gp120: N4S, D21Y, S34V, T35A, Q54H, E59Q, H77N, N105D, N107-, I133A, L137I, Q138K, K140R, K141Q, P155Q, N158D, N159K, N160D, E203A, I242V, E265K, K277R, I279V, A288V, K309E, E312D, -318K, -319V, -320K, -321L, -322A, -323E, -324S, -325Y, -328N, -329K, -330T, P335T, -368N, -371S, -372E, I386-, T387-, L388-, S414R, T416N, -433R, T436N, I439V; gp41: S42G, Q129T, Q130H, K172R, T189A, E221G, G225E, K231R, G232A, I235V, A267V, G281S, L304F; nef: N3I, W5C, S8P, A83D, D98E, Q105R, T133I, D176A; p1: L5F; p17: E55G, I75L, R91K; p24: I11M, I15L, I83L, T110N, V148A; p7: P9T, R10K, K41R; rev: S7G, K20R, R50S, H53R, A68T, L73F, G99E, S100P; tat: K24N, V29I, K53R; vif: R19K, C39G, K50R, D61N, R67K, H80Q, K128Q, V129I, T155I, G182D; vpr: H15Y, L68M, Q77R, R86Q, V89G; vpu: E44Q, E48K"}}}]}]}, {"name": "results/subtype_trees/CRF20_BG.nwk", "node_attrs": {"div": 0.13815, "clade_membership": {"value": "CRF20_BG"}}, "branch_attrs": {"mutations": {"nuc": ["C379A", "G518A", "G527A", "G641T", "T979C", "C988A", "T1238C", "T1385C", "G1487-", "G1488-", "G1489-", "C1490-", "C1491-", "T1682C", "A1687G", "T2443C", "G2693A", "A2767G", "T2770C", "T2800C", "A2845C", "T2863C", "A2869G", "C2885T", "A2887G", "C2960T", "A3277G", "G3316A", "A3562G", "G3808T", "G3846A", "T3967C", "A4105G", "C4261T", "C4270G", "A4650C", "C4841T", "A4901C", "C4902A", "C4914T", "A4990T", "C5221T", "A5499G", "T5562C", "A5693T", "A5706T", "C5878T", "C5998T", "T6178-", "A6186C", "-6198G", "A6229C", "-6808A", "-6810C", "A6965-", "-6998G", "-6999G", "-7000A", "-7001A", "-7002A", "-7003T", "A7030C", "A7186G", "G7289C", "A7846G", "A7918G", "A7974G", "A7996C", "T8008A", "G8050C", "G8184A", "G8254A", "G8350A", "T8371-", "G8376-", "G8377-", "A8378-", "A8386C", "A8429G", "G8458A", "T8495C", "T8568C", "A8699-", "T8701-"], 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"CRF20_BG"}, "country": {"value": "ES"}, "date": {"value": 2014.0}, "Strain_name": {"value": "ARP1210"}, "LANL_subtype": {"value": "CRF20_BG"}}, "branch_attrs": {"mutations": {"nuc": ["C160T", "-167A", "-217A", "G256A", "A261G", "A265G", "-280G", "A380T", "A491G", "G495T", "T503C", "A509G", "C540G", "A541G", "G563A", "T571A", "C603G", "A604T", "G608A", "G612A", "C623T", "C636G", "G645A", "G647A", "A660C", "T698G", "A700G", "G712A", "G743A", "C767T", "T830C", "T852G", "C905A", "G977A", "C983T", "G998A", "C1062T", "A1077G", "G1090A", "G1126A", "C1137A", "C1178T", "C1211T", "A1217G", "A1230C", "A1241G", "C1295T", "T1344C", "G1404A", "G1419A", "T1422C", "T1446A", "G1452A", "T1484C", "C1492A", "A1494G", "G1498A", "T1547C", "A1565G", "A1588G", "A1601G", "C1644A", "A1664G", "T1679C", "C1730T", "G1736A", "C1754T", "G1766T", "G1819A", "C1825A", "G1839A", "A1841G", "A1918T", "T1954G", "A1990G", "A2007G", "A2026G", "A2042G", "T2083C", "T2092C", "G2119A", "G2158A", "T2209C", "T2269C", "G2287A", 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"I13V", "R34K", "K37E", "I42L", "T66-", "L67M", "-68L", "L82V"]}, "labels": {"aa": "INT: E11D, R14K, D25E, I31V, A205S; RT-p51: E122P, I135R, P321S, I329V, Q334L, M357I, S379C, V435I; RT-p66: E122P, I135R, P321S, I329V, Q334L, M357I, S379C, V435I, K463R, V467L, S468P, K476Q, E492K, E516K, L517I; gp120: N4K, N5P, P23T, S37K, I56L, E59K, H77Q, -111K, -116S, -117T, -118L, K127R, Y149H, I156M, D157G, N159E, N161G, K199I, R201K, E239G, L260F, N267K, K277R, G280T, Q287R, A288S, A291T, T292N, G293N, D294I, V304E, V305I, R307G, M313T, Q315E, K316M, K318R, E323K, -324S, -325Y, -326N, -327K, -328N, -329I, -330T, S334G, G361K, S365N, S366T, -367K, -368P, S370T, -371G, -372N, -373M, -374T, -375I, I386-, T387-, A412E, -433G, N434T, T436V, D446N, R448K, R472E, R476L; gp41: L4M, G5A, A6T, F8L, L9F, Y75F, P98Q, Y108L, D113N, N114S, M115T, S138A, N140T, D148E, A151S, L191I, R214G, E215G, D217G, G221E, G225E, Q229K, I235T, S239R, A245V, R261I, S277R, L304F, V322I, F329I, L330W; nef: E18D, P24R, A27E, V28T, G29R, V30A, V33A, L37S, I43V, T44I, S45T, N51T, N52T, P53S, D54Y, A56G, W57G, L58R, E65*, V66E, P69L, V70L, Q73P; p1: L5I; p17: A54S, Q69G, F79Y, Q90V, L101V, V104I, K109Q, T120M, E122G, S126N; p2: S8T, A10T, A11G; p24: S41A, R116A, S120N, R132K, L136M, G225S, V230I; p6: G27D, S47N, P49H; p7: P9-, R11K, K41R; pro: R14K, I15V, I64M, K70R, I82V; rev: S7I, R17K, I21L, Y28H, E32G, A47E, I55L, T61A, T62S, P68S, L73F, E79D, V109I, K115E; tat: K24N, C31S, N40K, K53N, N67T, K71E, I74T, N80D, T82A, E86K; vif: F44Y, G60R, D61E, I65V, V66I, R67K, K90N, E93D, I128L, P156S, T180I; vpr: T19S, N28H, P37S, H45Y, R87S, V89G; vpu: S3P, E5Q, I13V, R34K, K37E, I42L, T66-, L67M, -68L, L82V"}}}, {"name": "CRF20_BG_NODE_0000001", "node_attrs": {"div": 0.14886, "clade_membership": {"value": "CRF20_BG"}}, "branch_attrs": {"mutations": {"nuc": ["-305T", "A437C", "G1526A", "A1765G", "A2926G", "G2951A", "C5234G", "A5235T", "G5385A", "C5559T", "T5911C", "G5989A", "-6172A", "-6178A", "-6179A", "-6180A", "C6183G", "T6184C", "A6192C", "A6286G", "A6368G", "-6807A", "C6826A", "C6829A", "A6830G", "C6832A", "A6833C", "A6842-", "C6843-", "A6844C", "G6940A", "G7153C", "A7155G", "T7626A", "A8006G", "-8699C", "-8701A"], "RT-p51": ["A286T"], "RT-p66": ["A286T"], "gp120": ["L137I", "T172A", "I281F", "V418I"], "gp41": ["I235V"], "rev": ["A15V"], "vpr": ["Q44V", "G94S"]}, "labels": {"aa": "RT-p51: A286T; RT-p66: A286T; gp120: L137I, T172A, I281F, V418I; gp41: I235V; rev: A15V; vpr: Q44V, G94S"}}, "children": [{"name": "MW062981", "node_attrs": {"div": 0.1735, "accession": "MW062981", "clade_membership": {"value": "CRF20_BG"}, "country": {"value": "US"}, "date": {"value": 2018.0}, "Strain_name": {"value": "5108_wk_2_3_I20"}, "LANL_subtype": {"value": "CRF20_BG"}}, "branch_attrs": {"mutations": {"nuc": ["T126C", "G130A", "T131A", "A133G", "T135G", "G137A", "A140T", "C142-", "C143-", "C144-", "T145-", "C146-", "A147-", "G148-", "A149-", "C150-", "C151-", "A152-", "C153-", "T154-", "C155-", "T156-", 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"G3494A", "C3498A", "C3499T", "C3504A", "T3567C", "A3571G", "G3643A", "T3668C", "A3670G", "C3691T", "A3748G", "T3778C", "T3793C", "A3796G", "G3869A", "A3900G", "G3907A", "A4051G", "A4076G", "A4078G", "T4140C", "T4177C", "G4228A", "G4264A", "G4388T", "T4396C", "A4407G", "A4474G", "C4501G", "A4536G", "C4540T", "G4549A", "G4573A", "G4581A", "C4652T", "G4673A", "T4676C", "G4696A", "G4737A", "C4761T", "A4766G", "A4787G", "G4802A", "G4839A", "A4865C", "T4868C", "T4928C", "T5003C", "C5041T", "C5050A", "T5062C", "G5122A", "T5162C", "A5186C", "C5237T", "T5309C", "T5424C", "G5461A", "T5466C", "C5491T", "G5535A", "C5549A", "G5556A", "G5558T", "A5560G", "A5574G", "A5576C", "T5614G", "T5628C", "T5641G", "A5644G", "A5656T", "C5688T", "A5691T", "G5747A", "G5784A", "T5787A", "A5788T", "C5789T", "A5790G", "G5794A", "-5797C", "-5799T", "A5805C", "-5809G", "-5810G", "-5811G", "C5826T", "T5861G", "T5870A", "A5896G", "G5948T", "A6020T", "A6168G", "-6170C", "T6171C", "-6173A", "-6174A", "-6175C", "-6177G", "A6182T", "C6189G", "T6196A", "A6197G", "G6198A", "T6199A", "-6200G", "-6201G", "-6202C", "-6209A", "-6210T", "-6211A", "-6212G", "-6213C", "-6214A", "-6215C", "-6216T", "-6217G", "-6218T", "-6219A", "-6222C", "T6299C", "C6318A", "T6373C", "G6391A", "T6418C", "G6436T", "G6456A", "G6464A", "A6520G", "A6581G", "G6605A", "C6607T", "T6688-", "A6689-", "T6690-", "A6691-", "G6692-", "G6693-", "A6694T", "T6697A", "-6698C", "-6699A", "-6700C", "-6701T", "-6702T", "-6703T", "C6713A", "G6716A", "G6718A", "T6758G", "A6759G", "G6767A", "A6779G", "T6787G", "C6794A", "A6796G", "C6797A", "A6800C", "T6827C", "A6828C", "A6831G", "A6854G", "G6855A", "C6856A", "A6863T", "A6900T", "T6946A", "G6948C", "A6953-", "A6954-", "-6965A", "-6966G", "-6967T", "-6986G", "-6987A", "-6988T", "-6989A", "-6990A", "-6991T", "-6992A", "-6993C", "-6994T", "-6995A", "-6996A", "-6997T", "A7002C", "-7004A", "-7005G", "-7006G", "-7007A", "-7008A", "-7009T", "T7105C", "A7130T", "G7146A", "A7148G", "A7149C", "T7156G", "A7158C", "A7163-", "C7164-", "T7165C", "C7171T", "C7250T", "G7269T", "C7313A", "G7315A", "T7325C", "C7328T", "G7343A", "A7504G", "A7519G", "T7565A", "G7594A", "A7629G", "A7633T", "A7677G", "A7722G", "T7757C", "A7818G", "T7863C", "C7874A", "A7887G", "T7888G", "A7931C", "C7951A", "C7960A", "C8005A", "A8029G", "C8062T", "C8065T", "G8114T", "G8158A", "A8184T", "T8203C", "A8228T", "T8243G", "T8281G", "G8308A", "T8337A", "A8364G", "G8387A", "A8396C", "A8399G", "C8412G", "C8413A", "C8415T", "G8424A", "A8453G", "T8505A", "G8516A", "A8564G", "C8590G", "C8640T", "T8711C", "C8720T", "C8740T", "A8784G", "G8799A", "A8815C", "A8826T", "A8827C", "T8847A", "T8870A", "G8877C", "G8893A", "T8903C", "G8936A", "G8945C", "A8954G", "G8955A"], "INT": ["E11D", "V32I", "K42R", "I101V", "I122T", "A205S", "K211R", "N254S", "R269K"], "RT-p51": ["E122P", "I135V", "L283I", "T297A", "K311R", "Q377L", "M403T"], "RT-p66": ["E122P", "I135V", "L283I", "T297A", "K311R", "Q377L", "M403T", "N447S", "V467I", "S468Y", "T470N", "L491S"], "gp120": ["S3A", "L6M", "A32S", "I56L", "N105S", "S109C", "-111S", "-113K", "-114E", "-115G", "-124E", "-125D", "Y149H", "P155Q", "N161S", "R201K", "E204K", "M243V", "D251N", "G280H", "Q287K", "A288T", "Y302G", "V305I", "K309E", "N311K", "L314M", "Q315K", "K316Q", "S334E", "T337S", "N349I", "G361E", "-377S", "-378D", "-379N", "-380T", "-381N", "-382G", "-383T", "-384R", "-385N", "I426L", "G431E", "N432A", "N435R", "T437N", "R472M"], "gp41": ["L4I", "F8L", "L9F", "A14T", "S88T", "N109S", "E110D", "N125S", "N140S", "K172R", "V187A", "L191I", "N195R", "T210P", "V271L", "Q294L", "I309L", "W314G", "F326L", "L345Q"], "nef": ["S8-", "-12G", "E18D", "V28I", "C55S", "A83G", "T133I", "M148V", "V153I", "N158T", "N162S", "C169S", "E179Q", "R184K", "E201D", "D205N"], "p17": ["I75V", "M115V", "T120V"], "p2": ["V7L", "S8P", "A11G", "S12A", "I13A"], "p24": ["I115V"], "p6": ["L1P"], "p7": ["K3R", "K7R", "G8N", "P9I", "R11-", "N12-", "I13-", "K41R"], "pro": ["I64M", "K70R", "F99L"], "rev": ["S7N", "L12I", "V15L", "K20R", "I21L", "Y28S", "H53S", "T61A", "P72S", "L73F", "S89I", "V104M"], "tat": ["V29M", "T58N", "G61V", "S62G", "N67T", "P81Q", "P84Q"], "vif": ["M29I", "G37D", "V51I", "V85I", "E93D", "A152V", "T155K", "R179K"], "vpr": ["N28H", "H45Y", "F69L"], "vpu": ["S3A", "L12V", "I13V", "I17L", "R47K", "D62E"]}, "labels": {"aa": "INT: E11D, V32I, K42R, I101V, I122T, A205S, K211R, N254S, R269K; RT-p51: E122P, I135V, L283I, T297A, K311R, Q377L, M403T; RT-p66: E122P, I135V, L283I, T297A, K311R, Q377L, M403T, N447S, V467I, S468Y, T470N, L491S; gp120: S3A, L6M, A32S, I56L, N105S, S109C, -111S, -113K, -114E, -115G, -124E, -125D, Y149H, P155Q, N161S, R201K, E204K, M243V, D251N, G280H, Q287K, A288T, Y302G, V305I, K309E, N311K, L314M, Q315K, K316Q, S334E, T337S, N349I, G361E, -377S, -378D, -379N, -380T, -381N, -382G, -383T, -384R, -385N, I426L, G431E, N432A, N435R, T437N, R472M; gp41: L4I, F8L, L9F, A14T, S88T, N109S, E110D, N125S, N140S, K172R, V187A, L191I, N195R, T210P, V271L, Q294L, I309L, W314G, F326L, L345Q; nef: S8-, -12G, E18D, V28I, C55S, A83G, T133I, M148V, V153I, N158T, N162S, C169S, E179Q, R184K, E201D, D205N; p17: I75V, M115V, T120V; p2: V7L, S8P, A11G, S12A, I13A; p24: I115V; p6: L1P; p7: K3R, K7R, G8N, P9I, R11-, N12-, I13-, K41R; pro: I64M, K70R, F99L; rev: S7N, L12I, V15L, K20R, I21L, Y28S, H53S, T61A, P72S, L73F, S89I, V104M; tat: V29M, T58N, G61V, S62G, N67T, P81Q, P84Q; vif: M29I, G37D, V51I, V85I, E93D, A152V, T155K, R179K; vpr: N28H, H45Y, F69L; vpu: S3A, L12V, I13V, I17L, R47K, D62E"}}}, {"name": "AY586545", "node_attrs": {"div": 0.1681, "accession": "AY586545", "clade_membership": {"value": "CRF20_BG"}, "country": {"value": "CU"}, "date": {"value": 1999.0}, "Strain_name": {"value": "Cu103"}, "LANL_subtype": {"value": "CRF20_BG"}}, "branch_attrs": {"mutations": {"nuc": ["C207T", "-217A", "C473T", "C496T", "C516A", "C540A", "A558C", "A613G", "T694C", "A806G", "A812G", "T1037C", "A1050G", "G1090A", "G1192A", "A1248C", "A1271G", "G1458T", "A1464C", "-1486A", "-1487G", "-1488G", "-1489G", "-1490C", "-1491C", "G1495A", "A1607G", "G1743-", "C1744-", "C1745-", "-1746G", "-1747C", "-1748T", "T2110C", "A2113T", "A2290G", "G2516T", "A2560G", "T2579A", "A2625G", "A2637T", "C2671T", "T2724G", "A2738T", "C2739A", "G2821A", "A3200G", "A3223C", "G3293A", "A3364G", "A3388G", "T3808A", "A4000G", "G4046T", "A4677G", "T4703G", "A4994C", "A5282C", "A5548C", "A5594G", "G5616T", "A5623G", "C5792A", "A5793C", "C5795A", "-5797T", "-5799G", "T5801C", "G5802A", "A5804T", "A5805G", "A5806C", "G5808T", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824G", "C5869T", "G5915A", "A6019G", "C6083A", "-6170T", "-6173T", "-6174C", "-6175A", "A6176G", "-6177T", "A6188G", "C6189T", "T6193G", "A6194T", "A6195C", "A6208-", "G6220-", "A6221-", "A6223-", "A6235C", "A6237T", "A6248T", "C6266A", "A6273G", "G6323A", "A6326G", "T6331G", "G6339A", "G6461A", "A6695T", "A6734G", "T6735A", "A6736C", "A6759T", "G6774A", "C6849A", "A6936G", "C6951G", "-6955T", "-6956A", "-6957A", "A7093G", "A7095G", "A7127T", "A7161G", "-7162G", "G7275A", "A7366G", "A7717G", "C7774T", "C7782A", "G7790A", "T7801C", "A7820T", "T7825C", "C7984A", "A8008G", "A8011C", "G8143A", "T8146C", "A8152G", "T8167C", "T8171G", "T8172G", "A8400C", "T8425C", "C8534G", "A8584T", "T8831C", "A8858G", "G8868A", "A8922T", "T9029G", "G9033A"], "INT": ["A91S"], "RT-p51": ["E6D", "G141W", "C162S", "E177G", "M178I", "Y181F", "L210W", "T215Y", "T369A", "A400T"], "RT-p66": ["E6D", "G141W", "C162S", "E177G", "M178I", "Y181F", "L210W", "T215Y", "T369A", "A400T"], "gp120": ["D21N", "H77N", "P106L", "N107S", "-111V", "-113S", "-114S", "-115E", "-116D", "K127N", "N128I", "N132Y", "Q138K", "K140R", "D157-", "N159D", "N160K", "E203K", "Y302F", "R307K", "-367N", "-368N", "-371G", "-372N", "N414S", "I425L", "-433S", "N434T", "T436R", "R474K"], "gp41": ["T160N", "D163N", "I173L", "L290G"], "nef": ["I20L", "V28A", "Y81F", "E176N", "I194L"], "p17": ["D15E", "A54V", "L61I", "Q69K", "I75L", "K93G"], "p2": ["M14L"], "p24": ["T107A", "R116T", "S120N", "R154K"], "p7": ["-10K"], "rev": ["E11D", "Q14R", "H53R", "T54A", "I55L", "G99R", "S100P", "I102V", "S107P", "V108G"], "tat": ["T58P"], "vif": ["I31V", "C39W", "Q136H", "T159I"], "vpr": ["I60L"], "vpu": ["I6V", "T66V"]}, "labels": {"aa": "INT: A91S; RT-p51: E6D, G141W, C162S, E177G, M178I, Y181F, L210W, T215Y, T369A, A400T; RT-p66: E6D, G141W, C162S, E177G, M178I, Y181F, L210W, T215Y, T369A, A400T; gp120: D21N, H77N, P106L, N107S, -111V, -113S, -114S, -115E, -116D, K127N, N128I, N132Y, Q138K, K140R, D157-, N159D, N160K, E203K, Y302F, R307K, -367N, -368N, -371G, -372N, N414S, I425L, -433S, N434T, T436R, R474K; gp41: T160N, D163N, I173L, L290G; nef: I20L, V28A, Y81F, E176N, I194L; p17: D15E, A54V, L61I, Q69K, I75L, K93G; p2: M14L; p24: T107A, R116T, S120N, R154K; p7: -10K; rev: E11D, Q14R, H53R, T54A, I55L, G99R, S100P, I102V, S107P, V108G; tat: T58P; vif: I31V, C39W, Q136H, T159I; vpr: I60L; vpu: I6V, T66V"}}}]}]}]}]}, {"name": "results/subtype_trees/G.nwk", "node_attrs": {"div": 0.08754999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A461G", "A665C", "A1142G", "A2629G", "T2723C", "A2815G", "C3067A", "C3252T", "C3294T", "A3334T", "G3398C", "T3414A", "T3445A", "A3457G", "G3490A", "G3491A", "G3494A", "T3497A", "T3544G", "G3664A", "A4735G", "T4826C", "T5356C", "C5397T", "A6019G", "G6323A", "C6446T", "-6697C", "C6824A", "A6825T", "A6844C", "C6857T", "-7004G", "-7007A", "C7024T", "G7026A", "A7060G", "G7964A", "A8531G", "T8867C"], "RT-p51": ["I178M", "D324E", "Q334L", "T386I", "Q394R", "A400V", "V435P", "F440Y"], "RT-p66": ["I178M", "D324E", "Q334L", "T386I", "A400V", "V435P", "F440Y", "V466I", "V467I", "S468T", "H483Q"], "gp120": ["V243I", "R307K", "R391K"], "gp41": ["G221R"], "rev": ["R39K"], "vif": ["K50R", "T159K"], "vpr": ["I84T"], "vpu": ["R41K"]}, "labels": {"aa": "RT-p51: I178M, D324E, Q334L, T386I, Q394R, A400V, V435P, F440Y; RT-p66: I178M, D324E, Q334L, T386I, A400V, V435P, F440Y, V466I, V467I, S468T, H483Q; gp120: V243I, R307K, R391K; gp41: G221R; rev: R39K; vif: K50R, T159K; vpr: I84T; vpu: R41K", "clade": "G"}}, "children": [{"name": "G_NODE_0000001", "node_attrs": {"div": 0.08913999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G53A", "G206A", "C679T", "C988A", "A1493G", "A1501T", "G1619A", "-1782C", "T1997G", "T2092C", "C2211A", "A2215C", "A2929C", "C4288T", "A4901T", "C5034T", "A5059G", "T5062A", "A5065G", "G5362A", "C5478T", "C5491T", "T5602A", "G5948T", "-6219A", "-6222A", "A6617G", "T6745C", "G6821A", "T6863G", "-6957T", "-6967T", "-7009T", "A7100G", "T7107A", "C7127A", "T7243C", "C7247T", "G7701A", "T7796A", "A8032G", "C8156T"], "RT-p51": ["T39K", "E40D", "Q278H"], "RT-p66": ["T39K", "E40D", "Q278H"], "gp120": ["A32S", "N108-", "-123K", "-124E", "I243R", "I249F", "S365N", "L425I", "P465S"], "gp41": ["S133N", "S165T"], "p17": ["K110N", "T115I"], "p7": ["N12I"], "pro": ["D35E", "C67S"], "rev": ["T62A"], "vif": ["Q105H", "K158R", "K160R"], "vpu": ["D60E", "L67M"]}, "labels": {"aa": "RT-p51: T39K, E40D, Q278H; RT-p66: T39K, E40D, Q278H; gp120: A32S, N108-, -123K, -124E, I243R, I249F, S365N, L425I, P465S; gp41: S133N, S165T; p17: K110N, T115I; p7: N12I; pro: D35E, C67S; rev: T62A; vif: Q105H, K158R, K160R; vpu: D60E, L67M"}}, "children": [{"name": "MH705134", "node_attrs": {"div": 0.11521999999999999, "accession": "MH705134", "clade_membership": {"value": "G"}, "country": {"value": "CD"}, "date": {"value": 1987.0}, "Strain_name": {"value": "PBS1191"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A14G", "G112A", "C160A", "-217A", "T288C", "-304A", "-305A", "G378A", "G394A", "G458A", "G481A", "A497G", "G534T", "A545G", "C558A", "A604G", "G667A", "A700C", "G771C", "T788C", "A791G", "A980G", "A1025C", "C1060A", "A1205G", "C1280T", "A1340G", "A1404G", "C1444T", "T1446A", "G1455A", 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"C6183A", "A6185T", "A6186G", "C6190T", "A6191G", "A6192G", "T6193G", "A6194G", "-6195T", "-6196A", "A6197G", "-6198C", "T6199C", "-6200A", "-6201G", "-6202C", "-6203A", "-6204A", "-6205T", "-6206A", "-6207G", "-6208C", "-6209A", "-6210C", "-6211T", "-6212G", "-6213T", "-6214G", "-6215G", "-6216A", "-6217T", "-6218G", "-6220C", "A6232G", "A6251G", "T6252C", "A6282G", "A6333G", "G6336A", "G6339A", "A6359G", "A6464G", "T6541A", "G6575A", "T6582G", "A6583G", "A6595G", "G6605A", "C6607T", "A6616G", "T6637G", "A6641G", "C6660T", "A6662C", "A6694G", "C6721T", "T6733A", "G6743A", "C6758T", "G6771A", "A6773G", "A6785G", "A6786G", "G6788C", "G6790A", "A6801G", "A6806G", "-6807G", "-6808T", "-6810A", "A6812C", "A6818C", "G6819A", "-6830A", "-6831A", "-6832T", "A6834G", "A6837G", "A6840G", "A6841T", "C6844G", "C6849G", "A6854G", "C6862T", "T6883C", "G6935A", "G6936A", "G6940A", "-6948A", "-6951G", "-6952T", "-6953T", "-6954G", "-6955G", "-6956C", "-6963A", "-6966G", "-6971A", "-6972G", "-6973T", 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"M178I", "K201R", "D248N", "A286T", "P321S", "Q428R", "P435L"], "gp120": ["P23T", "I56V", "T57N", "E59T", "-106V", "-107T", "-108C", "-109N", "T110N", "-111C", "-112T", "-113G", "-114V", "-115A", "-116S", "-117N", "-118S", "-119T", "-120V", "-121D", "-122D", "I126M", "I133A", "K143R", "K150R", "N159-", "N160-", "N161-", "S162-", "N169D", "N204E", "E241K", "D251N", "N261K", "S263A", "T269I", "D294E", "D297N", "H302Y", "S306N", "K307G", "N311G", "E312Q", "K316R", "-318G", "-319E", "K320Q", "-322Q", "E323K", "-324I", "-326N", "-327S", "N328S", "K329S", "I331N", "F333S", "N334F", "S335D", "G361K", "-367W", "-368L", "-379N", "-380S", "-381S", "-382N", "-383E", "-384A", "-385N", "M406I", "T416V", "K418R", "E479G"], "gp41": ["V7F", "T25A", "V30A", "I118L", "N125S", "Q130H", "E137Q", "E215G", "I222T", "G225E", "D232N", "A267V", "A268G", "S277N", "W279R", "K283N", "I307V", "L330R", "F340A"], "nef": ["E15A", "Q22R", "T23Q", "P24T", "E28A", "G29E", "S45I", "T48I", "N51H", "C55S", "D64E", "E65S", "A83Y", "Q105K", "D108E", "V146E", "S188G", "L198M"], "p17": ["A15T", "R20Q", "G49D", "K62R", "A67S", "L75I", "Q90R", "S111N", "E122T"], "p2": ["A7V", "S8T", "A11T", "A12T"], "p24": ["A14P", "I83M", "E98D", "T110N", "S225G"], "p6": ["G16R", "P23-", "S24P", "P25S", "-26Q"], "p7": ["R10K"], "pro": ["L63T"], "rev": ["V16I", "R50K", "I55L", "A68T", "S86G", "V97E", "G99R", "I102L", "S103F", "V109I"], "tat": ["N40T", "S62D", "V69I", "N80D", "S87Q"], "vif": ["G37A", "K63R", "R67K", "H80Q", "H110Y", "Q127H", "I128L", "T170A", "K176E", "*193W"], "vpr": ["Q3R", "T19A", "N48D", "I60L", "P85L", "G94S"], "vpu": ["A7S", "T24S", "R34K", "K35R", "K41Q", "T61L", "E62A", "E63A", "A65V", "T66E", "-68G", "V69N", "E70F", "M71D", "G72-", "D73-", "F74-", "D75-"]}, "labels": {"aa": "INT: S17N, K211R, I268L; RT-p51: V21I, D123G, S163T, K166R, K174N, M178I, K201R, D248N, A286T, P321S, Q428R, P435L; RT-p66: V21I, S123G, S163T, K166R, K174N, M178I, K201R, D248N, A286T, P321S, Q428R, P435L; gp120: P23T, I56V, T57N, E59T, -106V, -107T, -108C, -109N, T110N, -111C, -112T, -113G, -114V, -115A, -116S, -117N, -118S, -119T, -120V, -121D, -122D, I126M, I133A, K143R, K150R, N159-, N160-, N161-, S162-, N169D, N204E, E241K, D251N, N261K, S263A, T269I, D294E, D297N, H302Y, S306N, K307G, N311G, E312Q, K316R, -318G, -319E, K320Q, -322Q, E323K, -324I, -326N, -327S, N328S, K329S, I331N, F333S, N334F, S335D, G361K, -367W, -368L, -379N, -380S, -381S, -382N, -383E, -384A, -385N, M406I, T416V, K418R, E479G; gp41: V7F, T25A, V30A, I118L, N125S, Q130H, E137Q, E215G, I222T, G225E, D232N, A267V, A268G, S277N, W279R, K283N, I307V, L330R, F340A; nef: E15A, Q22R, T23Q, P24T, E28A, G29E, S45I, T48I, N51H, C55S, D64E, E65S, A83Y, Q105K, D108E, V146E, S188G, L198M; p17: A15T, R20Q, G49D, K62R, A67S, L75I, Q90R, S111N, E122T; p2: A7V, S8T, A11T, A12T; p24: A14P, I83M, E98D, T110N, S225G; p6: G16R, P23-, S24P, P25S, -26Q; p7: R10K; pro: L63T; rev: V16I, R50K, I55L, A68T, S86G, V97E, G99R, I102L, S103F, V109I; tat: N40T, S62D, V69I, N80D, S87Q; vif: G37A, K63R, R67K, H80Q, H110Y, Q127H, I128L, T170A, K176E, *193W; vpr: Q3R, T19A, N48D, I60L, P85L, G94S; vpu: A7S, T24S, R34K, K35R, K41Q, T61L, E62A, E63A, A65V, T66E, -68G, V69N, E70F, M71D, G72-, D73-, F74-, D75-"}}}, {"name": "G_NODE_0000002", "node_attrs": {"div": 0.09510999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G256A", "A380T", "A571T", "T694A", "A699G", "T1888C", "A2154G", "A2937G", "T2983G", "T2996A", "A3001G", "A3307G", "T3334G", "A3442G", "G3477A", "A3524G", "G3563A", "A3745G", "A3866G", "A4186G", "C4871T", "T4883C", "A4993C", "C6026A", "T6395A", "C6396A", "C6598T", "T6787G", "C6797-", "G6802-", "A6805-", "G6809A", "T6829-", "A6841G", "T6898C", "-6953A", "-6955T", "-6956A", "-7001A", "-7002A", "-7003T", "-7008C", "T7156C", "G7232A", "T7233C", "C7651T", "C7959T", "A7984C", "C8065T", "T8268C", "A8364-", "A8370-", "A8372-", "G8385C", "C8415G", "C8416T", "T8832C"], "INT": ["I31V"], "RT-p51": ["K20R", "K281R", "L301M", "D413E"], "RT-p66": ["K20R", "K281R", "L301M", "D413E", "R461K", "T477A", "G490R"], "gp120": ["L58M", "-111N", "D157N", "N159D", "S181N", "N311R", "Q315K", "K316N", "K320-", "F325-", "I332T", "S337A", "N437S", "V460T"], "gp41": ["P219L", "V322A"], "nef": ["E15Q", "P25V"], "p17": ["Y79F", "M120K"], "rev": ["L73F", "S103L"], "tat": ["P84S"], "vpu": ["V21I"]}, "labels": {"aa": "INT: I31V; RT-p51: K20R, K281R, L301M, D413E; RT-p66: K20R, K281R, L301M, D413E, R461K, T477A, G490R; gp120: L58M, -111N, D157N, N159D, S181N, N311R, Q315K, K316N, K320-, F325-, I332T, S337A, N437S, V460T; gp41: P219L, V322A; nef: E15Q, P25V; p17: Y79F, M120K; rev: L73F, S103L; tat: P84S; vpu: V21I"}}, "children": [{"name": "MH705162", "node_attrs": {"div": 0.12085999999999998, "accession": "MH705162", "clade_membership": {"value": "G"}, "country": {"value": "CD"}, "date": {"value": 1987.0}, "Strain_name": {"value": "87_2580"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C6T", "G92C", "T94C", "T105C", "G106A", "C109G", "C110G", "C111-", "A161T", "-217C", "A303G", "-304A", "-305C", "G495A", "A516C", "G534T", "C537A", "A656G", "C684A", "A791G", "T852A", "A891T", "C904T", "G914A", "G992A", "C1292G", "C1362T", "A1367G", "T1427C", "T1502G", "G1589A", "C1610A", "G1661A", "-1746C", "-1747C", "-1748T", "C1749T", "T1752C", "C1754G", "C1755A", "C1756A", "G1757A", "A1758C", "C1761G", "A1793G", "A1882G", "G1998A", "T1999G", "C2047T", "A2113C", "G2224A", "A2230T", "G2411A", "G2462A", "A2727G", "G2815A", "G2837A", "G2847A", "T2863C", "C2929T", "C2930T", "C2975T", "G2980A", "T3034A", "A3196G", "T3197C", "A3230G", "A3251G", "A3295G", "G3316A", "T3535C", "G3564A", "A3607G", "G3631A", "A3715T", "G3825A", "A4064G", "T4321A", "C4471T", "G4549A", "A4567G", "G4636A", "C4679T", "G4708A", "T4730C", "G4737A", "A4766T", "T4769G", "G4786T", "T4793C", "T4805C", "C4826A", "G4838A", "G4887A", "A5000T", "T5006G", "C5019T", "C5071T", "T5078C", "G5082A", "G5087C", "A5143G", "C5146A", "A5293C", "C5359T", "T5475C", "G5558A", "A5560G", "G5561A", "C5614G", "G5635T", "A5640G", "T5654G", "A5720G", "T5736A", "T5744G", "A5769C", "G5782A", "G5783C", "G5784A", "T5787G", "C5789T", "A5790G", "C5792G", "A5793G", "C5795A", "C5797T", "-5799G", "T5801C", "G5802A", "A5804T", "A5805G", "A5806C", "G5808T", "G5809-", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824G", "C5860A", "T5861A", "C5862-", "A5863-", "A5864-", "T5911C", "A5965T", "C5989T", "C6052T", "A6066C", "C6067A", "A6167G", "T6171-", "A6176-", "T6178-", "T6181-", "C6189A", "A6192G", "-6195G", "-6196C", "-6198G", "-6200G", "-6201T", "-6202G", "-6203G", "-6204G", "-6205C", "-6206A", "-6220C", "A6232G", "A6273G", "A6275C", "A6288T", "G6292T", "A6320C", "C6403A", "T6444C", "A6490C", "T6541C", "A6583G", "C6632T", "A6640T", "A6641T", "A6648C", "C6661T", "C6697T", "A6734G", "T6735A", "A6736C", "A6773G", "A6786G", "A6798-", "A6799-", "A6800-", "A6801-", "G6803-", "T6804-", "A6806-", "-6810G", "A6811G", "C6815G", "A6817C", "A6820T", "A6822C", "A6824C", "T6825A", "C6826A", "T6827C", "-6829A", "-6830C", "-6831T", "-6832A", "T6835C", "A6837T", "T6838C", "C6843A", "T6860C", "C6861A", "A6868G", "-6948T", "T6949G", "A6950T", "-6951C", "-6952A", "-6954A", "A6962G", "-6963C", "-6966A", "-6980G", "-6981C", "-6982A", "-6983T", "-6984C", "-6985A", "-6986G", "-6987A", "-6988T", "-6989A", "-6990G", "-6991T", "-6992A", "-6993A", "-6994T", "-6998G", "-6999G", "-7000A", "-7005A", "-7006C", "C7019A", "C7087A", "C7089A", "C7101A", "G7147T", "T7150C", "A7152T", "A7154G", "A7160G", "-7162A", "-7164G", "-7165T", "T7192C", "A7221T", "G7256A", "G7269A", "G7441A", "G7552A", "C7597T", "A7604G", "A7626T", "G7628A", "G7640A", "T7675C", "A7696C", "C7703T", "G7831A", "T7852C", "A7931C", "A7992G", "C8047T", "G8050A", "C8080A", "A8113G", "T8155C", "C8213A", "T8223C", "A8240G", "C8242G", "T8243G", "G8245A", "A8323T", "A8348G", "G8354A", "G8365-", "T8366-", "G8368-", "C8369-", "T8371-", "G8373-", "T8374-", "T8375-", "T8384C", "A8426G", "A8429G", "C8477T", "G8490A", "C8492T", "T8505C", "C8534A", "T8568G", "A8622G", "A8623G", "C8666T", "T8701A", "G8871A", "A8912G", "C8921T", "T8923G", "A8924G", "C8934A", "C9091T", "G9138A"], "INT": ["S17N", "T97A"], "RT-p51": ["E6D", "V106I", "D123S", "K211R", "D248N", "S251N", "P294S", "S379G", "I386V"], "RT-p66": ["E6D", "V106I", "K211R", "D248N", "S251N", "P294S", "S379G", "I386V", "R490K", "K540N"], "gp120": ["S3N", "N5-", "N71T", "N105D", "-112N", "-113S", "-114S", "-115S", "-116V", "-117G", "-118N", "I126M", "K140R", "K141Q", "Y145F", "K150R", "I156L", "N157-", "D183E", "I197T", "N204K", "K212N", "R243M", "L260F", "E262D", "E265A", "K307G", "E312N", "M313T", "L314S", "V317I", "L321-", "E323-", "N328-", "T330N", "S336H", "N365M", "-367N", "-368I", "-370A", "-371N", "-372A", "-373S", "-374D", "-375S", "-376N", "-377G", "-378N", "-384D", "-385T", "P389T", "A412E", "T416E", "-433I", "N434D", "T436E", "Y456F", "V468I", "R472K"], "gp41": ["T101A", "Y108F", "D109N", "D113N", "M176I", "T210P", "D230G", "L304I", "I307T", "N313E", "W314G"], "nef": ["S8-", "S9-", "I10-", "V11-", "A50T", "C55R", "D64E", "L76V", "A83G", "K94G", "F120Y", "D177N", "I194R", "L198M"], "p17": ["A54T", "M61L", "K62R", "A67S", "L68I", "I107M", "Q117K"], "p24": ["S41T", "T54S", "T58I", "D187E"], "p7": ["I12M", "D48E"], "pro": ["S67E"], "rev": ["A15T", "V16I", "Y28S", "P67S", "A68T", "L78I", "S89G"], "tat": ["G61D", "S62D", "L74F"], "vif": ["R17K", "R41K", "V51I", "D61E", "R67I", "H80Q", "D101N", "Q136P", "N140K", "P162L", "V166I", "R167S", "N186S", "P187H"], "vpr": ["P85L"], "vpu": ["P3A", "A7S", "V10L", "F16C", "K38R", "I46R", "G59T", "T61-", "E62-", "E63-", "L64-", "A65-", "T66-", "-68G", "E70D"]}, "labels": {"aa": "INT: S17N, T97A; RT-p51: E6D, V106I, D123S, K211R, D248N, S251N, P294S, S379G, I386V; RT-p66: E6D, V106I, K211R, D248N, S251N, P294S, S379G, I386V, R490K, K540N; gp120: S3N, N5-, N71T, N105D, -112N, -113S, -114S, -115S, -116V, -117G, -118N, I126M, K140R, K141Q, Y145F, K150R, I156L, N157-, D183E, I197T, N204K, K212N, R243M, L260F, E262D, E265A, K307G, E312N, M313T, L314S, V317I, L321-, E323-, N328-, T330N, S336H, N365M, -367N, -368I, -370A, -371N, -372A, -373S, -374D, -375S, -376N, -377G, -378N, -384D, -385T, P389T, A412E, T416E, -433I, N434D, T436E, Y456F, V468I, R472K; gp41: T101A, Y108F, D109N, D113N, M176I, T210P, D230G, L304I, I307T, N313E, W314G; nef: S8-, S9-, I10-, V11-, A50T, C55R, D64E, L76V, A83G, K94G, F120Y, D177N, I194R, L198M; p17: A54T, M61L, K62R, A67S, L68I, I107M, Q117K; p24: S41T, T54S, T58I, D187E; p7: I12M, D48E; pro: S67E; rev: A15T, V16I, Y28S, P67S, A68T, L78I, S89G; tat: G61D, S62D, L74F; vif: R17K, R41K, V51I, D61E, R67I, H80Q, D101N, Q136P, N140K, P162L, V166I, R167S, N186S, P187H; vpr: P85L; vpu: P3A, A7S, V10L, F16C, K38R, I46R, G59T, T61-, E62-, E63-, L64-, A65-, T66-, -68G, E70D"}}}, {"name": "G_NODE_0000003", "node_attrs": {"div": 0.1049, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["-167A", "G378T", "G424A", "A426C", "C435A", "A509G", "A562G", "G712A", "G762A", "A866G", "A989G", "T1118C", "T1676C", "T1682C", "C1712A", "G1727A", "G1769A", "A1775G", "T1790C", "T2101A", "G2332A", "G2431A", "T2440C", "G2463A", "A2977C", "A3088G", "G3142A", "G3544A", "G3997A", "A4243G", "C4270T", "A4495G", "G4581A", "A4608G", "C4841T", "C4937A", "C4965G", "A4967G", "A4976C", "C5237T", "T5327C", "A5432C", "G5437C", "T5439C", "G5448A", "A5534G", "G5535A", "A5616C", "T5626-", "C5678G", "C5679T", "G5800A", "-5810G", "-5811G", "T5929C", "A5957T", "G5964A", "G6019A", "A6023G", "-6170G", "-6173A", "-6175C", "-6212A", "-6218G", "T6271C", "G6303A", "G6326A", "A6329G", "T6582G", "G6611A", "G6693C", "-6797A", "-6802T", "-6805C", "-6807C", "A6814T", "T6828-", "-6951A", "-6952T", "-6954T", "-6963G", "G7027A", "A8093G", "G8143A", "A8152G", "T8167C", "G8590C", "C8675T"], "INT": ["R269K", "D278G"], "RT-p66": ["S123D"], "gp120": ["T35S", "S37K", "T57V", "A253T", "R280S", "-318T", "S366N", "-368S", "-370S", "-371T", "-372N", "-374T"], "gp41": ["I264V", "C326G", "F340L"], "nef": ["I194L"], "p17": ["A15S", "R30K", "M31L", "L34I", "K76R", "S126N"], "p24": ["V11I"], "p6": ["A39T"], "rev": ["H82S", "I102V", "S107P"], "tat": ["K19T", "A21P", "K53R"], "vif": ["M8V", "D117E", "Q127E", "R130S"], "vpr": ["H45Y"]}, "labels": {"aa": "INT: R269K, D278G; RT-p66: S123D; gp120: T35S, S37K, T57V, A253T, R280S, -318T, S366N, -368S, -370S, -371T, -372N, -374T; gp41: I264V, C326G, F340L; nef: I194L; p17: A15S, R30K, M31L, L34I, K76R, S126N; p24: V11I; p6: A39T; rev: H82S, I102V, S107P; tat: K19T, A21P, K53R; vif: M8V, D117E, Q127E, R130S; vpr: H45Y"}}, "children": [{"name": "AY371121", "node_attrs": {"div": 0.14734999999999998, "accession": "AY371121", "clade_membership": {"value": "G"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_4049HAN"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G398A", "A423C", "C456A", "G481A", "T503A", "A513G", "T514C", "A519G", "T525A", "G527A", "C558A", "T570C", "G579C", "A585G", "C586T", "G607A", "A664G", "C665A", "T668C", "A694G", "G695A", "A705G", "G717A", "T718G", "T731C", "C773A", "T777A", "T782C", "A839C", "A878C", "C879T", "A880C", "A881C", "A938T", "G968A", "A978T", "A988C", "A1115T", "G1192A", "T1229C", "G1256A", "G1268A", "C1292T", "G1339A", "A1361G", "G1450C", "T1451A", "G1452A", "G1455A", "T1501C", "T1559C", "A1601G", "A1619G", "A1642G", "T1646C", "G1661A", "G1691C", "T1728G", "A1771G", "A1793G", "G1794A", "T1796C", "G1839A", "A1840G", "A1867G", "A1903C", "G1997A", "A2026G", "T2080A", "G2111A", "C2149T", "G2182A", "A2194G", "A2212T", "G2317A", "C2353T", "A2395G", "A2406G", "A2422G", "T2425C", "A2461G", "G2473A", "G2518A", "A2612G", "G2629A", "G2714A", "A2726G", "A2752G", "A2881G", "G2914A", "C2930T", "A2938G", "C2941T", "G3001A", "G3015A", "G3165A", "A3196G", "T3253C", "A3370G", "G3439A", "A3497G", "A3544T", "T3566C", "C3649T", "A3655G", "G3737A", "G3770A", "T3778C", "G3808C", "C3823T", "G3836A", "G3859A", "T3976C", "C4068G", "G4096A", "A4108G", "T4117C", "C4141T", "A4162C", "G4263C", "T4291C", "C4471T", "T4477C", "A4498C", "A4531G", "A4555G", "A4564G", "T4672A", "T4674C", "G4677A", "G4689A", "A4693G", "G4695C", "G4696A", "C4697T", "G4735A", "G4737A", "A4774T", "A4775G", "G4779A", "A4817G", "G4838A", "C4844T", "T4868C", "C4883T", "C4914T", "C4976T", "C4993A", "T5018C", "G5030A", "A5049C", "G5087T", "A5099G", "C5115T", "A5167G", "G5236A", "G5257A", "A5305G", "A5312G", "C5351T", "C5432T", "C5445T", "A5448C", "G5461A", "T5462A", "T5478C", "G5482T", "T5483A", "A5535C", "C5539A", "A5544G", "G5545A", "C5551T", "A5555C", "G5556A", "A5564C", "G5565A", "A5601G", "A5602T", "-5626G", "G5673A", "A5694G", "A5727C", "T5739G", "A5781G", "-5799T", "G5812-", "-5824A", "A5896C", "T5911A", "G5915A", "A5918C", "C5921A", "T5932C", "T5948G", "C6024T", "G6086C", "C6097T", "T6154G", "T6155C", "-6172C", "-6174C", "-6177C", "T6178C", "-6179A", "-6180C", "T6181C", "A6188G", "C6189G", "C6190T", "A6192C", "-6195T", "-6196A", "A6197G", "-6198A", "-6200A", "-6201A", "-6202T", "-6203A", "-6204G", "-6205C", "-6206A", "-6207A", "-6208T", "-6209A", "-6210A", "-6211T", "-6213T", "-6214C", "-6215A", "-6216C", "-6217G", "A6219T", "-6220G", "A6234C", "A6235C", "C6238T", "C6241T", "T6244C", "G6274A", "A6276T", "G6277A", "A6279G", "A6281C", "A6283G", "T6337A", "G6345T", "A6368T", "G6391A", "A6395G", "C6403A", "A6430G", "G6457A", "G6466T", "C6482T", "A6489G", "G6575A", "G6617A", "A6653G", "C6660T", "A6695T", "A6744G", "G6774A", "A6775G", "A6776G", "G6788A", "A6789C", "G6790A", "-6808A", "A6811C", "A6813C", "C6815T", "T6816C", "A6817T", "G6819C", "A6821T", "A6824G", "T6825A", "C6826A", "T6827-", "-6832A", "A6833T", "C6849T", "C6856G", "A6877G", "A6886C", "T6895C", "G6936A", "-6948T", "T6955A", "A6956T", "T6957C", "T6958A", "-6966G", "-6983A", "-6984C", "-6985A", "-6986A", "-6987A", "-6988T", "-6989A", "-6990G", "-6991T", "-6992A", "-6993C", "-6994T", "-6995G", "-6996A", "-6997G", "-7005A", "-7006A", "G7042A", "C7084T", "A7090C", "G7100A", "G7147A", "A7152G", "T7153G", "A7154G", "C7156T", "A7161C", "-7162C", "A7163T", "-7164C", "-7165A", "C7170T", "T7192A", "G7198A", "G7212A", "G7225T", "C7250T", "C7313A", "G7315A", "G7428A", "A7519G", "A7527T", "T7618C", "A7626T", "G7633A", "G7640A", "C7678T", "G7712A", "A7713T", "A7722G", "C7747A", "C7770A", "A7771C", "T7775C", "A7782G", "C7801A", "T7843G", "A7885G", "A7891G", "G7892A", "G7957A", "A7962G", "G7977A", "C7984A", "G7995A", "G7997A", "T8008A", "G8032A", "G8050A", "C8080A", "T8091G", "C8092T", "T8115C", "G8130A", "T8157G", "G8158T", "T8159G", "T8171C", "T8174C", "G8184A", "T8203C", "A8222C", "C8242T", "A8273G", "T8279G", "A8294C", "G8308A", "-8364A", "-8367A", "-8370A", "-8372A", "C8385A", "G8388A", "G8393A", "G8415A", "G8428A", "T8431A", "G8434C", "T8440C", "T8442-", "C8443-", "T8444-", "C8445-", "A8446-", "A8447-", "G8448-", "A8449-", "T8450-", "T8451-", "T8452-", "A8453-", "G8454-", "C8455-", "T8456-", "A8457-", "G8458-", "G8459-", "C8460-", "A8461-", "T8462-", "G8463-", "G8464-", "A8465-", "G8466-", "C8467-", "A8468-", "A8469-", "T8470-", "C8471-", "A8472-", "C8473G", "A8474G", "C8477T", "C8480G", "A8481-", "A8482-", "T8483-", "A8484-", "C8485-", "T8505A", "C8534T", "T8568C", "G8570A", "A8643G", "A8688C", "T8711C", "A8718T", "A8719G"], "INT": ["E11D", "A21T", "A98G", "G163A"], "RT-p51": ["E6K", "K39N", "K104R", "T173A", "M178I", "E207K", "K211E", "R307K", "R357K"], "RT-p66": ["E6K", "K39N", "K104R", "T173A", "M178I", "E207K", "K211E", "R307K", "R357K", "T468A", "Q483H", "S491P", "V548I", "V559I"], "gp120": ["D19E", "D21N", "T22P", "P23T", "S32A", "E78Q", "-106V", "-107T", "-108T", "-109T", "K123-", "E124G", "K127T", "K141I", "K142R", "K143Q", "N161R", "R164M", "T172S", "N181D", "D183E", "P210S", "K212R", "E241K", "V255I", "S263T", "N267D", "T269I", "S280T", "I281F", "D297G", "T308A", "R311K", "E312T", "T332I", "N334K", "G361E", "N365I", "-367I", "-373S", "-375E", "-376N", "-377E", "-385T", "-433T", "N434R", "T439I", "D446E", "S453N", "K457N"], "gp41": ["L4I", "S42N", "Y75F", "Y108F", "D113N", "E137I", "N140S", "D148E", "A156D", "N160S", "N166K", "V197I", "E220G", "G225E", "R231K", "D232N", "F263C", "V271A", "S277L", "L285C", "W286G", "Y291H", "R294Q", "I307L", "R324G", "N331H"], "nef": ["Q15K", "V16I", "V25I", "G29E", "V30E", "G31A", "V33A", "S34-", "Q35-", "D36-", "L37-", "A38-", "R39-", "H40-", "G41-", "A42-", "I43-", "T44-", "N47-", "T48-", "C55S", "I101V", "N116H", "N126C"], "p1": ["K4R"], "p17": ["K30Q", "L41M", "G49D", "I60A", "K62G", "L64I", "L75I", "F79L", "V82L", "T84V", "R91K", "N110R", "K120R", "N124D", "V128S"], "p2": ["G9A", "A10T", "A11T"], "p24": ["S16T", "Q50S", "I83L", "Q86P", "E128D", "R154K", "R203K"], "p6": ["R4S", "F17V", "K31R"], "p7": ["I12T"], "pro": ["R14K", "E35D"], "rev": ["S7A", "E10G", "R14Q", "R17Q", "A37T", "R50K", "S54T", "A62T", "A68T", "L78I", "S82C", "G99R", "V104W", "V108A", "V109A"], "tat": ["T19I", "K24N", "V29K", "V36Y", "R53S", "G57R", "P59S", "Q60P", "K63T", "G83D", "K85E"], "vif": ["M29K", "Y30H", "V31I", "A35T", "K36R", "G37H", "R50K", "V51I", "K63M", "V65I", "H110Y", "T155P", "R167S", "P177S"], "vpr": ["A4V", "I70V"], "vpu": ["T24S", "E40D", "D44E", "T61L", "E62A", "E63A", "A65M", "T66E", "-68G", "V69N", "E70F", "M71D", "G72-", "D73-", "F74-", "D75-"]}, "labels": {"aa": "INT: E11D, A21T, A98G, G163A; RT-p51: E6K, K39N, K104R, T173A, M178I, E207K, K211E, R307K, R357K; RT-p66: E6K, K39N, K104R, T173A, M178I, E207K, K211E, R307K, R357K, T468A, Q483H, S491P, V548I, V559I; gp120: D19E, D21N, T22P, P23T, S32A, E78Q, -106V, -107T, -108T, -109T, K123-, E124G, K127T, K141I, K142R, K143Q, N161R, R164M, T172S, N181D, D183E, P210S, K212R, E241K, V255I, S263T, N267D, T269I, S280T, I281F, D297G, T308A, R311K, E312T, T332I, N334K, G361E, N365I, -367I, -373S, -375E, -376N, -377E, -385T, -433T, N434R, T439I, D446E, S453N, K457N; gp41: L4I, S42N, Y75F, Y108F, D113N, E137I, N140S, D148E, A156D, N160S, N166K, V197I, E220G, G225E, R231K, D232N, F263C, V271A, S277L, L285C, W286G, Y291H, R294Q, I307L, R324G, N331H; nef: Q15K, V16I, V25I, G29E, V30E, G31A, V33A, S34-, Q35-, D36-, L37-, A38-, R39-, H40-, G41-, A42-, I43-, T44-, N47-, T48-, C55S, I101V, N116H, N126C; p1: K4R; p17: K30Q, L41M, G49D, I60A, K62G, L64I, L75I, F79L, V82L, T84V, R91K, N110R, K120R, N124D, V128S; p2: G9A, A10T, A11T; p24: S16T, Q50S, I83L, Q86P, E128D, R154K, R203K; p6: R4S, F17V, K31R; p7: I12T; pro: R14K, E35D; rev: S7A, E10G, R14Q, R17Q, A37T, R50K, S54T, A62T, A68T, L78I, S82C, G99R, V104W, V108A, V109A; tat: T19I, K24N, V29K, V36Y, R53S, G57R, P59S, Q60P, K63T, G83D, K85E; vif: M29K, Y30H, V31I, A35T, K36R, G37H, R50K, V51I, K63M, V65I, H110Y, T155P, R167S, P177S; vpr: A4V, I70V; vpu: T24S, E40D, D44E, T61L, E62A, E63A, A65M, T66E, -68G, V69N, E70F, M71D, G72-, D73-, F74-, D75-"}}}, {"name": "G_NODE_0000004", "node_attrs": {"div": 0.11488, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A419G", "G428A", "C507G", "A508T", "G520A", "A715C", "C767T", "A785G", "A1025G", "A1028T", "G1142A", "A1157G", "G1328A", "C2263T", "C2335T", "C2485T", "T2737G", "G2980A", "T3096C", "G3379A", "C3773T", "A3781G", "G3907A", "C3995A", "C4006T", "A4057G", "A4130C", "G4131C", "G4264A", "G4861A", "T4925C", "G4949A", "A5094G", "T5397G", "T5466C", "G5493A", "A5537C", "C5614G", "A5864G", "A5935C", "G6028A", "-6172A", "-6174A", "T6199-", "-6213C", "-6214A", "A6313G", "G6638A", "C6642G", "C6670T", "A6692C", "A6812C", "-6948A", "A7045G", "A7097C", "G7517A", "A7655C", "A7705G", "A7796T", "C7801T", "T7825C", "A7943C", "T7968C", "C8092A", "T8164C", "C8411T", "T8789C", "A8816G", "C8867T", "A8922C", "C9097T"], "INT": ["L74I", "S119P"], "RT-p51": ["F214L", "L334P"], "RT-p66": ["F214L", "L334P"], "gp120": ["N4D", "M58I", "N105-", "-113N", "N161T", "E262K", "T436D"], "gp41": ["V72I", "I118L", "N133S", "T165S", "I222T"], "nef": ["F135L", "V153I"], "p17": ["Q58V", "Q127P"], "rev": ["S7D", "T8P", "E32A", "S106P"], "tat": ["N7K", "H54P", "R78S", "S87P"], "vif": ["R92K", "Q136P", "T170A"], "vpu": ["P3A", "E60D", "M67L"]}, "labels": {"aa": "INT: L74I, S119P; RT-p51: F214L, L334P; RT-p66: F214L, L334P; gp120: N4D, M58I, N105-, -113N, N161T, E262K, T436D; gp41: V72I, I118L, N133S, T165S, I222T; nef: F135L, V153I; p17: Q58V, Q127P; rev: S7D, T8P, E32A, S106P; tat: N7K, H54P, R78S, S87P; vif: R92K, Q136P, T170A; vpu: P3A, E60D, M67L"}}, "children": [{"name": "U88826", "node_attrs": {"div": 0.13352, "accession": "U88826", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 1992.0}, "Strain_name": {"value": "92NG083_JV10832"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G158A", "A159T", "C160G", "G162A", "T163A", "T165C", "A166G", "A170G", "A171T", "C173-", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "C193T", "T201C", "A215-", "A216-", "A302T", "A303T", "A336G", "G398A", "A412G", "G455A", "A460G", "C478G", "G481A", "C540T", "T593C", "G607A", "T637C", "G653A", "A675G", "G696A", "C710T", "A791G", "A797G", "C902T", "G956T", "G1016A", "G1031T", "C1280T", "C1304T", "C1610A", "A1616G", "A1622G", "G1673A", "C1692A", "G1794A", "G1839A", "A1902G", "C2044T", "T2278C", "T2383C", "A2406G", "A2416G", "G2459A", "G2530A", "C2596T", "C2605T", "T2607C", "C2839A", "A2846G", "G2847A", "C2848T", "T3002C", "T3050C", "A3230G", "A3241C", "T3310C", "A3320G", "T3368C", "T3464C", "T3566C", "A3636G", "T3746C", "G3808A", "A4111G", "C4129T", "C4140T", "A4271G", "G4273A", "C4428T", "A4531G", "A4577C", "G4764A", "A4774C", "A4806G", "C4826A", "T4832C", "G4887A", "C4890A", "T4891C", "C4914T", "T4991C", "T5028C", "T5035C", "T5078A", "A5085G", "G5131A", "A5376G", "T5391C", "C5451T", "T5577C", "A5613G", "C5627-", "T5628-", "G5629-", "C5630-", "A5631-", "A5632-", "T5633-", "A5634-", "G5635-", "A5637C", "G5638T", "T5666C", "G5700A", "G5794A", "-5799T", "G5845A", "T5923C", "C6007T", "A6061G", "T6085G", "T6109G", "C6139T", "G6149A", "T6151C", "-6177G", "-6179G", "-6180C", "C6183A", "A6185C", "C6190T", "A6191G", "T6193-", "A6194-", "A6197-", "-6204G", "-6205G", "-6206C", "-6207C", "-6208A", "-6209A", "-6210T", "-6211A", "-6215C", "-6216T", "-6217G", "G6218T", "-6220G", "T6250G", "T6264G", "A6265G", "A6266G", "A6270G", "A6281G", "A6324G", "T6334G", "G6336C", "A6353C", "A6464G", "T6468A", "A6577T", "A6640T", "C6660T", "C6777T", "A6786G", "A6799G", "-6808A", "A6809G", "-6810C", "T6814G", "A6820G", "-6828A", "-6829T", "C6843A", "C6862T", "A6913G", "T6925C", "T6957G", "G6963T", "-6966A", "-7005A", "-7006G", "G7056A", "C7080T", "C7101T", "C7124T", "T7153C", "A7158G", "A7161C", "-7162A", "A7163G", "-7164A", "-7165G", "A7351G", "T7386C", "G7502T", "G7628A", "A7676C", "A7693C", "A7701G", "A7818G", "A7918G", "C7936T", "A7962G", "G7965A", "T8007C", "A8086G", "G8107A", "A8113G", "T8155C", "G8234A", "T8235C", "T8243G", "G8280A", "A8297G", "G8304C", "A8348G", "-8364A", "-8367A", "-8370A", "-8372A", "G8388A", "G8490A", "T8495C", "G8537T", "A8549G", "C8655A", "A8656G", "G8678A", "T8745C", "G8799A", "A8827T", "G8898A", "G9005A", "A9099G", "C9129T", "A9131G"], "INT": ["T122I", "R166G", "T218I", "I268L"], "RT-p51": ["K104R", "E122K", "F171S", "D248E", "S251D", "Y319H", "S379G", "T409A"], "RT-p66": ["K104R", "E122K", "F171S", "D248E", "S251D", "Y319H", "S379G", "T409A", "Y457H", "S491P", "E514G"], "gp120": ["V57A", "H77Q", "D85E", "V99I", "T110-", "-112V", "N132K", "I137R", "R138G", "D139G", "K143E", "N157S", "D159G", "N167H", "N204E", "F205Y", "E241D", "K262N", "T269I", "S280P", "K307R", "T308I", "-319A", "-320Q", "-322R", "E323K", "-324I", "-325Y", "-327N", "T330N", "-367I", "S370I", "T371N", "-373E", "R401K", "P409L", "I415L", "T416V"], "gp41": ["V28A", "A67S", "D109N", "N125H", "Q130H", "K172R", "E220G", "R221K", "I235T", "F263L", "V311T", "W314G", "G326Y", "I332V", "R334T"], "nef": ["V16I", "A50T", "E65S", "Q105R", "N162I", "D186N"], "p17": ["M1V", "K26R", "E42G", "P48R", "G49D", "Q69*", "R91K", "L101P", "K114E", "D121N"], "p24": ["E75D", "R100S"], "p6": ["P5T"], "p7": ["D48E"], "pro": ["R14K", "E35G", "S67G"], "rev": ["I21T", "P30S", "R80G", "E87K", "S89G", "G99R"], "tat": ["T76I", "K85E", "E86K"], "vif": ["G60R", "K63T", "T74A", "H80Q", "D101N", "L102T", "H110Y", "L150S", "R167G", "G182D"], "vpr": ["N91D", "S96P"], "vpu": ["A7-", "A8-", "I9-", "V10-"]}, "labels": {"aa": "INT: T122I, R166G, T218I, I268L; RT-p51: K104R, E122K, F171S, D248E, S251D, Y319H, S379G, T409A; RT-p66: K104R, E122K, F171S, D248E, S251D, Y319H, S379G, T409A, Y457H, S491P, E514G; gp120: V57A, H77Q, D85E, V99I, T110-, -112V, N132K, I137R, R138G, D139G, K143E, N157S, D159G, N167H, N204E, F205Y, E241D, K262N, T269I, S280P, K307R, T308I, -319A, -320Q, -322R, E323K, -324I, -325Y, -327N, T330N, -367I, S370I, T371N, -373E, R401K, P409L, I415L, T416V; gp41: V28A, A67S, D109N, N125H, Q130H, K172R, E220G, R221K, I235T, F263L, V311T, W314G, G326Y, I332V, R334T; nef: V16I, A50T, E65S, Q105R, N162I, D186N; p17: M1V, K26R, E42G, P48R, G49D, Q69*, R91K, L101P, K114E, D121N; p24: E75D, R100S; p6: P5T; p7: D48E; pro: R14K, E35G, S67G; rev: I21T, P30S, R80G, E87K, S89G, G99R; tat: T76I, K85E, E86K; vif: G60R, K63T, T74A, H80Q, D101N, L102T, H110Y, L150S, R167G, G182D; vpr: N91D, S96P; vpu: A7-, A8-, I9-, V10-"}}}, {"name": "G_NODE_0000005", "node_attrs": {"div": 0.12237999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G914A", "A978C", "T1422C", "G1430A", "C1460A", "A1476G", "T1501C", "G1592A", "G1743A", "C2092T", "C2464A", "G2704A", "G2815A", "C2929A", "A3217G", "G3442A", "G3756A", "G3866A", "C4261T", "G4677A", "G4696A", "A4774G", "A4806C", "C5050A", "C5356T", "C5496T", "C5554T", "G5561A", "T5568G", "C5616T", "C5795A", "C5797-", "A5800T", "A5804C", "G5809C", "G5810T", "G5811T", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-6177A", "A6186C", "-6195G", "A6229C", "C6289T", "C6318A", "T6328G", "G6456A", "A6682G", "T6772C", "G6774A", "A6779G", "A6785G", "-6808T", "A6833-", "A6947G", "T6954A", "-6966C", "G7042A", "C7096A", "G7256A", "G7658C", "C7688G", "G7754T", "A7782G", "C7969A", "C8062T", "G8133A", "C8242T", "T8279G", "G8349A", "G8350A", "G8365-", "T8366-", "G8368-", "C8369-", "T8371-", "G8373-", "T8374-", "T8375-", "A8402G", "C8412G", "T8414A", "T8416C", "T8440C", "A8446G", "A8576T", "G8882A", "C9028T", "T9108C", "T9130C", "A9131T", "G9132A", "C9133G", "A9134C", "G9135A"], "INT": ["V31I"], "RT-p51": ["D123E", "H278Q"], "RT-p66": ["D123E", "H278Q", "S554N"], "gp120": ["P155Q", "I281L", "R311E", "S437T", "V468I"], "gp41": ["E119Q", "Q129D", "A151S", "N160S", "S277N"], "nef": ["G3N", "S8-", "S9-", "I10-", "V11-", "I20M", "Q22R", "P24E", "V25A", "V33A", "Q35R"], "p24": ["I83L"], "p7": ["S4G"], "rev": ["V16I", "I18S", "P72S"], "tat": ["S62N", "D64E", "P87Q"], "vif": ["V31I", "G37N", "K63R", "T74P", "T155K"]}, "labels": {"aa": "INT: V31I; RT-p51: D123E, H278Q; RT-p66: D123E, H278Q, S554N; gp120: P155Q, I281L, R311E, S437T, V468I; gp41: E119Q, Q129D, A151S, N160S, S277N; nef: G3N, S8-, S9-, I10-, V11-, I20M, Q22R, P24E, V25A, V33A, Q35R; p24: I83L; p7: S4G; rev: V16I, I18S, P72S; tat: S62N, D64E, P87Q; vif: V31I, G37N, K63R, T74P, T155K"}}, "children": [{"name": "JN248584", "node_attrs": {"div": 0.17895999999999998, "accession": "JN248584", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09NG_SC21"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "A437T", "G452A", "C456A", "G461A", "A470T", "G507A", "A519C", "T525A", "G527A", "C539T", "C540A", "T571A", "A584T", "A585G", "A605G", "G608A", "A617G", "A620G", "A654C", "C665A", "G667A", "A677G", "A678G", "A706G", "G709A", "C713A", "C722T", "A730T", "T746C", "G771C", "G810A", "A818C", "T852A", "C902T", "T917C", "G941A", "G968A", "A980G", "A988C", "T1004C", "A1007G", "G1016A", "C1060A", "A1077C", "G1078A", "C1088T", "A1089G", "A1115T", "C1137T", "C1175T", "A1190C", "A1193G", "A1205G", "T1253A", "T1262C", "G1278A", "G1279A", "C1295A", "G1313A", "A1359T", "T1385C", "T1427A", "A1461G", "A1474G", "T1481C", "G1495A", "A1496G", "G1543A", "A1544G", "T1559A", "G1561A", "G1562A", "A1565G", "A1587C", "A1606G", "A1614C", "A1618G", "A1619G", "A1656C", "G1673A", "C1676T", "C1714A", "A1719C", "G1720T", "T1722C", "G1725A", "G1726A", "G1732A", "A1738G", "A1740G", "T1741A", "A1742G", "C1744T", "C1745A", "-1746G", "-1747C", "-1748C", "A1759G", "G1781A", "A1793C", "G1794T", "T1796C", "G1819A", "C1825A", "C1826A", "T1895C", "A1908G", "A1969G", "T1986C", "G1997A", "A2003C", "C2044T", "T2062C", "A2125G", "A2128G", "G2154A", "G2155A", "A2212T", "C2266T", "A2272G", "G2317A", "A2374C", "T2383C", "G2411A", "T2521C", "A2611G", "C2613A", "A2614G", "A2615G", "A2617T", "A2656G", "A2665T", "T2735C", "G2761A", "A2764G", "C2776T", "A2821G", "A2846G", "G2847C", "C2848A", "T2863C", "G2872A", "G2878A", "T2899C", "G2902A", "G2926A", "C2975T", "G3016A", "A3037G", "C3056T", "G3085A", "C3100G", "G3127A", "C3129A", "C3133T", "A3264G", "C3275A", "A3277G", "A3283G", "G3293C", "G3344A", "A3430G", "T3469A", "A3477G", "A3483G", "A3502G", "A3520G", "T3526G", "T3535C", "A3563G", "A3570C", "C3610T", "G3631A", "T3644A", "C3668T", "A3676T", "G3686A", "G3737A", "G3766A", "G3770A", "G3808T", "A3814G", "T3820C", "A3880G", "C4021T", "A4027T", "A4071T", "A4112G", "T4135C", "A4175G", "T4321C", "A4397T", "A4407G", "C4428T", "C4471T", "A4519G", "G4549A", "G4568A", "C4576T", "T4585C", "T4667C", "T4672A", "G4695A", "T4702C", "G4708A", "C4728A", "G4735A", "T4742C", "G4764A", "G4765A", "C4776A", "A4781G", "G4786C", "A4819G", "C4844A", "G4856A", "A4862C", "C4889T", "C4976A", "G4981A", "G4982T", "T4985C", "A5007C", "T5034C", "G5046A", "T5047C", "C5052T", "G5087A", "A5112G", "C5116A", "G5141C", "A5159G", "A5185G", "T5197C", "T5203C", "T5209G", "A5210C", "G5212C", "C5213A", "C5221G", "A5247G", "C5314T", "C5327T", "G5363A", "C5382A", "T5424C", "C5425A", "C5445T", "T5457C", "G5471A", "G5472T", "A5481G", "G5482C", "A5548G", "A5555G", "G5557A", "G5565A", "G5599A", "T5604A", "T5617A", "-5626T", "C5641T", "T5653A", "A5689G", "A5691G", "G5692C", "A5693T", "G5699A", "A5701C", "A5712G", "G5715A", "A5716G", "A5727C", "A5729G", "T5772C", "G5775C", "A5781T", "G5784A", "T5787C", "C5792A", "A5793G", "T5798-", "T5807C", "G5808C", "G5812A", "-5824A", "C5860T", "T5861G", "T5917C", "C5974T", "C6024A", "G6029A", "G6035A", "A6061G", "G6079A", "T6085G", "C6097T", "T6101C", "G6133A", "C6139T", "G6149A", "T6154A", "T6169G", "G6170A", "C6175A", "T6178C", "-6179A", "-6180G", "A6185G", "A6188T", "T6193C", "-6196T", "-6198G", "-6199C", "-6200A", "-6201T", "-6202T", "-6203G", "-6204C", "-6205C", "-6206A", "-6207A", "-6208C", "-6209A", "-6210T", "-6211G", "-6215A", "-6216C", "-6217A", "A6219T", "-6220A", "A6222T", "A6226G", "A6232G", "T6252C", "A6276G", "G6277T", "A6281C", "C6305A", "T6306C", "C6317G", "T6322G", "G6329A", "A6333G", "C6403A", "T6418C", "G6466T", "C6482A", "C6483T", "A6488C", "A6490T", "C6496T", "A6573G", "A6580G", "A6581G", "G6582T", "G6593C", "A6648C", "C6667T", "A6668G", "A6669G", "C6692T", "A6695T", "C6697-", "-6703A", "C6717T", "T6719A", "A6737G", "G6743A", "A6764G", "T6766G", "G6771A", "A6781T", "A6791G", "-6810G", "A6811T", "A6818-", "A6821G", "A6824G", "T6825A", "C6826T", "T6827C", "-6828T", "C6843G", "T6860C", "C6862T", "C6874T", "C6888T", "A6889G", "G6935A", "C6938T", "T6949G", "T6952G", "A6953G", "T6955A", "A6956T", "T6958A", "-7005G", "-7006A", "C7014T", "C7016T", "C7018G", "G7054A", "T7059C", "A7094G", "C7097A", "T7099C", "G7100A", "C7101G", "A7102G", "A7106G", "A7107T", "A7127C", "A7149C", "T7150A", "T7153C", "A7155G", "A7157T", "A7158C", "-7162T", "A7163-", "T7222C", "A7239G", "A7265T", "G7269A", "C7324A", "G7343A", "A7348T", "A7351G", "A7373C", "A7447T", "C7597T", "T7625C", "A7626T", "A7629G", "G7633T", "A7676C", "C7678A", "A7690C", "A7692T", "A7701G", "C7702T", "A7711G", "C7747A", "G7759A", "T7775C", "G7790A", "A7791G", "A7818G", "G7831C", "T7843C", "A7880T", "C7921T", "T7959C", "T8065C", "A8069C", "G8070T", "A8092T", "T8115G", "A8143G", "C8146A", "C8147A", "A8154G", "T8155C", "T8171C", "A8208G", "T8218C", "T8257C", "T8290C", "A8303G", "G8304C", "A8323G", "G8335A", "A8338G", "A8348G", "C8382G", "C8413A", "C8445A", "G8459A", "C8471T", "G8516T", "A8519G", "G8526C", "G8537A", "G8589A", "C8590G", "T8594C", "C8655A", "A8656G", "C8676T", "G8678A", "A8699C", "T8701A", "T8746A", "C8771T", "A8774G", "G8787A", "C8794A", "A8837G", "C8840T", "A8859T", "G8861A", "A8870T", "A8909G", "C8921T", "A8954G", "T8972C", "C9018A"], "INT": ["E11D", "Y99F", "I113V", "N134D", "I208L", "K211R", "T218I", "A265T"], "RT-p51": ["R20K", "K39N", "V106I", "T173K", "K174D", "S251A", "P294S", "P321S", "D335E", "P345Q", "K390R", "V400L", "V417I"], "RT-p66": ["R20K", "K39N", "V106I", "T173K", "K174D", "S251A", "P294S", "P321S", "D335E", "P345Q", "K390R", "V400L", "V417I", "K461R", "K463R", "R490G", "E492A", "L517I", "K527N", "V531I", "V548I", "V559I"], "gp120": ["S3A", "V57D", "E59K", "V61I", "H77Q", "V99I", "-107K", "-108I", "-109D", "T110K", "-112S", "-114S", "-115S", "-116T", "E124D", "E125L", "I133T", "K141S", "K143Q", "L151T", "Q155E", "I156M", "N158K", "D159N", "N160S", "T161S", "D183E", "R201K", "P210I", "K212H", "E240G", "I242M", "R243V", "E247Q", "E265A", "N272G", "A288V", "F289I", "D294A", "D297N", "N304E", "S306N", "K309D", "M313V", "-319S", "-320H", "T330S", "S336P", "T345M", "G361R", "N365E", "N366K", "-367E", "S368L", "-373G", "T387I", "V402A", "N414E", "T416R", "K418V", "I425L", "-433S", "N434S", "D436E", "E438-", "T439-", "K462R", "T471S", "R472K"], "gp41": ["A14T", "I24L", "Y108L", "D109G", "E110D", "N125Q", "Q130L", "D148E", "D163S", "K172R", "M176I", "I193L", "L219P", "S256L", "V271G", "L282I", "Y284C", "N302S", "R334A"], "nef": ["P14A", "T23V", "E62Q", "A83S", "Q105R", "F120Y", "L135Y", "D149N", "A151E", "I153V", "M173L", "E176D"], "p1": ["N9H"], "p17": ["L41M", "V58M", "K62Q", "L64I", "Q69K", "F79Y", "T84A", "I107L", "N110K", "S111N", "I115V", "N124S", "S125N", "N126K", "Y132F"], "p2": ["I13A"], "p24": ["A14P", "V27I", "E29D", "S41T", "Q86P", "T110N", "R116Q", "S120G", "E128D", "G183N", "T210S"], "p6": ["A12E", "S14L", "F15L", "G16K", "G18E", "E20G", "I21E", "A22I", "P23A", "S24P", "P25S", "-26P", "K27R", "L38F", "T39S", "S47N", "P49Q"], "p7": ["K3R", "R10K", "I12T", "R26K", "R32K", "K41Q", "K47R", "T50P", "E51G"], "pro": ["L10I", "N37S", "L63P", "K69Q"], "rev": ["R14G", "R17K", "F73L", "Q74P", "S82C", "S89R", "P100N", "V108A"], "tat": ["D2E", "Q17K", "W32Y", "V36L", "T58A", "Q60W", "G61S", "S84P"], "vif": ["M29K", "F39S", "R41K", "H48N", "R50K", "G60K", "L64I", "R67T", "D78G", "K92N", "S130R", "R132N", "K141Q", "V154T", "P156S", "K176E", "P177H", "E185D"], "vpr": ["Q3R", "E13Q", "T19A", "P37T", "N48S", "T84I", "P93T"], "vpu": ["L4I", "A7S", "F16I", "T24S", "I28V", "E29L", "R31K", "K32Q", "K37E", "E40D", "K41R", "E56D", "E58D", "-68M", "V69-", "D73N"]}, "labels": {"aa": "INT: E11D, Y99F, I113V, N134D, I208L, K211R, T218I, A265T; RT-p51: R20K, K39N, V106I, T173K, K174D, S251A, P294S, P321S, D335E, P345Q, K390R, V400L, V417I; RT-p66: R20K, K39N, V106I, T173K, K174D, S251A, P294S, P321S, D335E, P345Q, K390R, V400L, V417I, K461R, K463R, R490G, E492A, L517I, K527N, V531I, V548I, V559I; gp120: S3A, V57D, E59K, V61I, H77Q, V99I, -107K, -108I, -109D, T110K, -112S, -114S, -115S, -116T, E124D, E125L, I133T, K141S, K143Q, L151T, Q155E, I156M, N158K, D159N, N160S, T161S, D183E, R201K, P210I, K212H, E240G, I242M, R243V, E247Q, E265A, N272G, A288V, F289I, D294A, D297N, N304E, S306N, K309D, M313V, -319S, -320H, T330S, S336P, T345M, G361R, N365E, N366K, -367E, S368L, -373G, T387I, V402A, N414E, T416R, K418V, I425L, -433S, N434S, D436E, E438-, T439-, K462R, T471S, R472K; gp41: A14T, I24L, Y108L, D109G, E110D, N125Q, Q130L, D148E, D163S, K172R, M176I, I193L, L219P, S256L, V271G, L282I, Y284C, N302S, R334A; nef: P14A, T23V, E62Q, A83S, Q105R, F120Y, L135Y, D149N, A151E, I153V, M173L, E176D; p1: N9H; p17: L41M, V58M, K62Q, L64I, Q69K, F79Y, T84A, I107L, N110K, S111N, I115V, N124S, S125N, N126K, Y132F; p2: I13A; p24: A14P, V27I, E29D, S41T, Q86P, T110N, R116Q, S120G, E128D, G183N, T210S; p6: A12E, S14L, F15L, G16K, G18E, E20G, I21E, A22I, P23A, S24P, P25S, -26P, K27R, L38F, T39S, S47N, P49Q; p7: K3R, R10K, I12T, R26K, R32K, K41Q, K47R, T50P, E51G; pro: L10I, N37S, L63P, K69Q; rev: R14G, R17K, F73L, Q74P, S82C, S89R, P100N, V108A; tat: D2E, Q17K, W32Y, V36L, T58A, Q60W, G61S, S84P; vif: M29K, F39S, R41K, H48N, R50K, G60K, L64I, R67T, D78G, K92N, S130R, R132N, K141Q, V154T, P156S, K176E, P177H, E185D; vpr: Q3R, E13Q, T19A, P37T, N48S, T84I, P93T; vpu: L4I, A7S, F16I, T24S, I28V, E29L, R31K, K32Q, K37E, E40D, K41R, E56D, E58D, -68M, V69-, D73N"}}}, {"name": "KY658701", "node_attrs": {"div": 0.16992, "accession": "KY658701", "clade_membership": {"value": "G"}, "country": {"value": "CM"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMG11CM046"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A815G", "G866A", "G977A", "A1002C", "G1031T", "A1035G", "T1040C", "T1058C", "C1094T", "C1118T", "G1192A", "C1211T", "G1247A", "G1256A", "A1259G", "T1296C", "G1388A", "A1404G", "G1443A", "C1444T", "A1445G", "C1492A", "A1500C", "C1610A", "A1644G", "C1682T", "G1690A", "C1692A", "C1693T", "A1727G", "A1733G", "C1790T", "A1828C", "G1852A", "C1864T", "A1918G", "G1998A", "T1999G", "T2087C", "A2152C", "G2182A", "A2212G", "C2215T", "A2233G", "A2293G", "T2323C", "C2356T", "C2386A", "G2389A", "G2392A", "A2395G", "A2404G", "A2419G", "G2459A", "T2607A", "A2612G", "A2627T", "G2629A", "T2779C", "G2833A", "G2837A", "A2845C", "A2869G", "C2909G", "G2937A", "G2946A", "A2959G", "G2983A", "A3067C", "A3079G", "G3080A", "G3088A", "A3103G", "A3109T", "T3181C", "T3207C", "A3214C", "G3221T", "G3229A", "A3238T", "A3251G", "T3256A", "T3271C", "G3307T", "T3376C", "C3399T", "T3412C", "A3448G", "A3491G", "T3535G", "G3564A", "A3592C", "A3736G", "T3742C", "T3746C", "C3799T", "G3816A", "G3825A", "T3991C", "A4051G", "A4178G", "C4180T", "G4243A", "A4246G", "G4263C", "T4316C", "A4474C", "G4495A", "C4501T", "C4540T", "A4567G", "A4581G", "G4583C", "G4608A", "A4625G", "C4652T", "T4656C", "T4674C", "G4695C", "T4769G", "G4782A", "G4786A", "T4799C", "T4805A", "A4814G", "C4820A", "C4826T", "T4827C", "T4832C", "A4858T", "T4871C", "A4878G", "T4991C", "A4997G", "T5016C", "G5036A", "A5042T", "T5043C", "G5066A", "T5084C", "G5128A", "G5131A", "G5179A", "T5224C", "T5228C", "C5242T", "C5248T", "A5268C", "T5275A", "A5282T", "A5285C", "A5287G", "A5293G", "A5302C", "C5303T", "A5355T", "A5367G", "A5376G", "C5382T", "T5391C", "G5397A", "A5431C", "C5432G", "C5451T", "G5463T", "T5475C", "C5514A", "C5551T", "A5555C", "A5603T", "A5623G", "-5626G", "T5628A", "T5636C", "A5649G", "G5678C", "A5685T", "A5722G", "A5728C", "T5739G", "T5778C", "C5789-", "A5790-", "G5791-", "-5797G", "T5798A", "-5799G", "T5807A", "G5808A", "-5824G", "A5848G", "T5857C", "T5866C", "C5869A", "G5939A", "A5940G", "T5948G", "T5957A", "A5964G", "T5968C", "C5998T", "C6004T", "C6010T", "A6022G", "C6024T", "G6029C", "A6030C", "T6046A", "A6059G", "A6136G", "A6172G", "C6175T", "T6181-", "T6187C", "C6189A", "-6196C", "-6198C", "-6199A", "C6213T", "-6215G", "-6216A", "-6217T", "-6220C", "G6227A", "A6228G", "A6263G", "A6265G", "G6274A", "A6276C", "G6277A", "G6280A", "G6292A", "T6295G", "T6321C", "A6323G", "A6324G", "A6326G", "A6327G", "T6334C", "G6336C", "G6362A", "G6379A", "A6395G", "G6457T", "T6460G", "G6463A", "G6466C", "A6471C", "T6472A", "A6490G", "A6500T", "G6532A", "A6574G", "A6577T", "A6581C", "G6582A", "G6593A", "C6613T", "A6640G", "C6665A", "C6693A", "A6694T", "A6695C", "G6716A", "G6718A", "T6733A", "A6754G", "C6777A", "A6781G", "T6794A", "A6796G", "A6797G", "A6806T", "-6810T", "T6814C", "A6818G", "A6820G", "G6863T", "G6940A", "A6948G", "A6951G", "A6953T", "T6964G", "T6967A", "-6968T", "-6969C", "-6970A", "-6971A", "-6972C", "-6973T", "-6974T", "-6975C", "-6976T", "-6977A", "-6978A", "-6979T", "-6980G", "-6981G", "-6982G", "A7001-", "A7002-", "T7003-", "G7004-", "A7026G", "G7062C", "T7075C", "C7087T", "C7101A", "A7108C", "A7113G", "C7124T", "T7150C", "A7154G", "A7160C", "-7162G", "-7164A", "-7165C", "G7190A", "G7195A", "G7225A", "C7250T", "G7291A", "G7295C", "T7309G", "C7313A", "G7441A", "G7456A", "C7463A", "A7517C", "A7549G", "C7576T", "T7630G", "T7642C", "C7678T", "A7689G", "A7700T", "G7712C", "A7722T", "T7774C", "T7852G", "A7887G", "T7888A", "T7912C", "C7937T", "C8005T", "A8006G", "T8008G", "A8011C", "C8031A", "G8032A", "C8037T", "G8050C", "C8080A", "G8145C", "G8152A", "T8156C", "C8165A", "T8171G", "G8184A", "T8209C", "A8228G", "G8234A", "T8235C", "A8236C", "T8292G", "A8297G", "G8330T", "C8331T", "A8390C", "A8405G", "A8407G", "A8409G", "T8411A", "C8413G", "G8436C", "A8438G", "A8489T", "G8490C", "C8491A", "A8494C", "T8495A", "C8499G", "A8503C", "G8516A", "C8534T", "C8552T", "A8584T", "T8675C", "G8738A", "T8745C", "G8753A", "G8762A", "A8784G", "G8786A", "G8799A", "G8804A", "G8818A", "T8835C", "T8855G", "G8871C", "G8885A", "G8886A", "T8887A", "G8893A", "A8894G", "C8948T", "A9042G"], "INT": ["R14K", "S17N", "I135V", "G163A", "F181L", "K269R", "D270H", "G278D", "R284G"], "RT-p51": ["E122K", "F171Y", "T173A", "M178L", "D248N", "E250D", "P272A", "R281K", "R284K", "E324D", "V329I", "V371A", "Q373H", "A376S", "I386V", "E404D", "P435L"], "RT-p66": ["E122K", "F171Y", "T173A", "M178L", "D248N", "E250D", "P272A", "R281K", "R284K", "E324D", "V329I", "V371A", "Q373H", "A376S", "I386V", "E404D", "P435L", "I466V", "H480Q", "R490K"], "gp120": ["N5K", "D29S", "S32A", "S35T", "K37R", "I56M", "E59P", "N64K", "K69E", "-105N", "-106V", "-107N", "-108N", "-109T", "-112N", "N113S", "-114T", "-120I", "-121D", "-122D", "E125S", "I137V", "K141T", "I156T", "N157G", "N158G", "V170I", "N181D", "R201N", "D202E", "N206T", "T216S", "E241D", "R243Q", "E247K", "P271T", "S280H", "A288T", "T308K", "K309E", "E312-", "M313-", "L314-", "K315-", "N316-", "V317-", "T318-", "L321-", "-324M", "-325M", "-326E", "-327N", "A337S", "N365G", "N366S", "-367Y", "S368I", "S370R", "N372S", "-373T", "T374S", "-375N", "-376G", "-385T", "K391R", "G403A", "N414K", "I415L", "T416E", "K418N", "N420S", "-433N", "N434D", "D436N", "D446N", "M447I", "E481Q"], "gp41": ["L4M", "L54M", "I72L", "D109E", "D129G", "S133Y", "E137Q", "N140I", "N195R", "H212Y", "I235V", "A243E", "A245V", "F263L", "G281A", "L288I", "L290V", "R294Q", "I309V", "V311T", "L330R", "I332V", "A343F"], "nef": ["T23A", "E24G", "A32P", "A50H", "N51T", "P53A", "D54A", "Y81F", "M148V", "G159E", "H171Q", "D177H", "V182K", "R184K"], "p1": ["I5V"], "p2": ["A7M"], "p24": ["I91L", "R100S", "S102G", "R154K", "S225G"], "p6": ["R4K", "P5I", "A22T", "T39A", "*50S"], "p7": ["P9Q", "I12P", "D48E"], "pro": ["S67E"], "rev": ["P30L", "H53C", "S54A", "I55L", "S61R", "A62T", "A68P", "L78I", "G99S", "V102I", "L103S", "P106H", "V108G"], "tat": ["T19R", "P59S", "Q60S"], "vif": ["V8M", "Y30H", "N37H", "D61E", "V66I", "R67K", "H73Q", "D78E", "Q91L", "I98V", "S144P", "R181K", "G182D"], "vpr": ["E55A", "I60L", "I61L", "I63M", "Q66H", "T84F", "R88G", "N91D", "P93S", "S96P"], "vpu": ["I6V", "V10A", "I39V", "K41Q", "D44E", "T66K", "N81D"]}, "labels": {"aa": "INT: R14K, S17N, I135V, G163A, F181L, K269R, D270H, G278D, R284G; RT-p51: E122K, F171Y, T173A, M178L, D248N, E250D, P272A, R281K, R284K, E324D, V329I, V371A, Q373H, A376S, I386V, E404D, P435L; RT-p66: E122K, F171Y, T173A, M178L, D248N, E250D, P272A, R281K, R284K, E324D, V329I, V371A, Q373H, A376S, I386V, E404D, P435L, I466V, H480Q, R490K; gp120: N5K, D29S, S32A, S35T, K37R, I56M, E59P, N64K, K69E, -105N, -106V, -107N, -108N, -109T, -112N, N113S, -114T, -120I, -121D, -122D, E125S, I137V, K141T, I156T, N157G, N158G, V170I, N181D, R201N, D202E, N206T, T216S, E241D, R243Q, E247K, P271T, S280H, A288T, T308K, K309E, E312-, M313-, L314-, K315-, N316-, V317-, T318-, L321-, -324M, -325M, -326E, -327N, A337S, N365G, N366S, -367Y, S368I, S370R, N372S, -373T, T374S, -375N, -376G, -385T, K391R, G403A, N414K, I415L, T416E, K418N, N420S, -433N, N434D, D436N, D446N, M447I, E481Q; gp41: L4M, L54M, I72L, D109E, D129G, S133Y, E137Q, N140I, N195R, H212Y, I235V, A243E, A245V, F263L, G281A, L288I, L290V, R294Q, I309V, V311T, L330R, I332V, A343F; nef: T23A, E24G, A32P, A50H, N51T, P53A, D54A, Y81F, M148V, G159E, H171Q, D177H, V182K, R184K; p1: I5V; p2: A7M; p24: I91L, R100S, S102G, R154K, S225G; p6: R4K, P5I, A22T, T39A, *50S; p7: P9Q, I12P, D48E; pro: S67E; rev: P30L, H53C, S54A, I55L, S61R, A62T, A68P, L78I, G99S, V102I, L103S, P106H, V108G; tat: T19R, P59S, Q60S; vif: V8M, Y30H, N37H, D61E, V66I, R67K, H73Q, D78E, Q91L, I98V, S144P, R181K, G182D; vpr: E55A, I60L, I61L, I63M, Q66H, T84F, R88G, N91D, P93S, S96P; vpu: I6V, V10A, I39V, K41Q, D44E, T66K, N81D"}}}]}]}]}]}]}, {"name": "G_NODE_0000006", "node_attrs": {"div": 0.08992999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A3378G", "A5376G", "-6177A", "T6193C", "A6394G", "C6545T", "T6599A", "G6605A", "A6799G", "-6807A", "-6808A", "-6810C", "G8184A", "G8799A"], "RT-p51": ["Q428R"], "RT-p66": ["Q428R"], "gp120": ["N105-", "D251N"], "gp41": ["L290V", "R294Q"], "nef": ["V153I"], "p24": ["G183N"], "rev": ["V108G"], "vpr": ["N91D"]}, "labels": {"aa": "RT-p51: Q428R; RT-p66: Q428R; gp120: N105-, D251N; gp41: L290V, R294Q; nef: V153I; p24: G183N; rev: V108G; vpr: N91D"}}, "children": [{"name": "G_NODE_0000007", "node_attrs": {"div": 0.09343999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["-217T", "G607A", "C665A", "G1142A", "G1247A", "T1790C", "A1903T", "G2317A", "C2613A", "T3535A", "G4735A", "T4925C", "C5356T", "T5397C", "G5692C", "A5701G", "-5811G", "A5965C", "A6023C", "G6336A", "A6950-", 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"A6191-", "A6192-", "C6193-", "A6194-", "A6197-", "T6199-", "A6232G", "A6281G", "G6326A", "G6339C", "T6395A", "G6638A", "A6641T", "A6644G", "A6654T", "C6697T", "A6805G", "C6849A", "A6881G", "T6949A", "-6986A", "-6988C", "-6989A", "-6990A", "G7042A", "A7161G", "C7324T", "G7441A", "G7552A", "A7583C", "G7633A", "G7720A", "T7843C", "C8095A", "G8308A", "C8471T", "G8588A", "C8720T", "T8746A"], "RT-p51": ["K102Q", "T173K", "L283I", "E399D"], "RT-p66": ["K102Q", "T173K", "L283I", "E399D", "Q483N"], "gp120": ["N4D", "-107D", "K143E", "D157N", "S162T", "E262K", "I264V", "-322G", "-327N", "I332N", "I343V", "S365T", "-370S", "-371S", "-372S", "-373S", "-374E", "-375N", "N437S"], "gp41": ["T94P"], "nef": ["E15A", "A50T", "F135Y"], "p17": ["L68I"], "p2": ["S8G", "G9A"], "p6": ["S24A"], "p7": ["R10K"], "rev": ["L83I"], "tat": ["A21P", "P59S"], "vif": ["K63T", "R92K", "I98V", "R132S", "N186S"], "vpr": ["T19A", "P85R"], "vpu": ["I17L"]}, "labels": {"aa": "RT-p51: K102Q, T173K, L283I, E399D; RT-p66: K102Q, T173K, L283I, E399D, Q483N; gp120: N4D, -107D, K143E, D157N, S162T, E262K, I264V, -322G, -327N, I332N, I343V, S365T, -370S, -371S, -372S, -373S, -374E, -375N, N437S; gp41: T94P; nef: E15A, A50T, F135Y; p17: L68I; p2: S8G, G9A; p6: S24A; p7: R10K; rev: L83I; tat: A21P, P59S; vif: K63T, R92K, I98V, R132S, N186S; vpr: T19A, P85R; vpu: I17L"}}, "children": [{"name": "KU168277", "node_attrs": {"div": 0.13918999999999998, "accession": "KU168277", "clade_membership": {"value": "G"}, "country": {"value": "CD"}, "date": {"value": 2003.0}, "Strain_name": {"value": "LA23LiEd"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G43C", "G50A", "G92A", "C96T", "A101G", "T154A", "G162T", "T213G", "T214A", "T217A", "-304A", "-305A", "A359G", "A417C", "G424A", "C435T", "A437G", "T473C", "A512G", "A519G", "G524A", "A530T", "A562G", "G615A", "A676C", "C679T", "T694A", "G696A", "A700C", "A704G", "C767T", "A791G", "A809G", "C827T", "T830C", "A891T", "C904T", "G908A", "G941A", 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"A4312G", "A4455T", "C4501G", "T4613A", "G4677A", "A4688G", "A4692G", "A4693G", "A4694T", "G4695A", "G4696A", "G4727A", "C4754T", "T4769G", "G4779A", "T4835A", "G4982T", "A4993C", "A5048G", "A5049G", "A5059G", "G5062A", "A5065G", "T5081C", "G5086A", "T5102C", "A5167G", "T5182A", "T5197C", "C5221T", "A5293G", "A5296G", "A5345G", "T5354C", "A5355C", "C5361A", "G5385A", "C5397T", "C5398A", "G5418A", "A5431C", "T5439A", "G5448A", "G5461A", "T5462G", "G5463A", "C5487T", "G5535A", "A5548C", "G5557A", "T5568C", "T5617C", "A5631C", "A5668G", "A5693T", "A5717G", "C5734A", "-5794A", "-5799T", "G5800A", "-5810G", "T5911A", "G5915A", "C5924T", "C6023A", "T6085G", "A6124T", "C6145T", "T6155C", "T6166A", "A6167G", "T6169-", "T6171-", "A6176-", "A6177-", "T6178-", "T6181-", "A6182-", "C6183-", "A6221-", "G6224A", "A6229C", "A6234G", "A6273G", "A6276T", "G6277A", "G6303A", "C6305A", "T6328C", "A6330G", "T6358C", "A6368G", "C6370T", "C6412T", "G6442A", "G6456A", "G6466T", "A6478G", "A6599C", "A6605G", 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"C8048T", "C8051A", "T8094C", "G8134C", "C8146T", "T8164C", "T8167C", "G8171C", "C8213A", "A8222G", "T8257C", "T8265G", "G8276A", "C8277T", "A8323T", "G8330A", "C8331T", "G8335A", "C8336G", "A8342G", "A8353G", "T8371G", "C8382T", "A8386C", "G8387A", "A8407G", "T8414G", "A8426G", "A8469G", "T8483C", "G8490A", "C8514G", "A8519T", "G8526C", "G8531A", "G8537A", "A8643G", "A8652C", "C8655A", "C8684T", "A8784T", "T8789G", "C8794A", "A8812C", "C8843T", "G8861A", "A8869C", "T8903C", "G8945T", "G8991A", "C9014T", "C9017A", "G9128C", "G9135A", "C9181T"], "INT": ["E11D", "S24N", "N27C", "I84M", "Y227F", "C280S"], "RT-p51": ["I60V", "K104R", "D123S", "S162A", "K173R", "K174R", "E207G", "K277R", "A286T", "S379G", "V381I"], "RT-p66": ["I60V", "K104R", "S162A", "K173R", "K174R", "E207G", "K277R", "A286T", "S379G", "V381I", "S491P", "L517V", "S554N"], "gp120": ["D19E", "D21N", "H77Q", "-105E", "-106K", "N108M", "-109R", "T110-", "E125-", "I126-", "K127-", "K140R", "K141I", "L151I", "N159S", "T172A", "S181T", "R201K", "I249L", "N251D", "I255T", "K262R", "N267T", "I281F", "D294E", "D297E", "Q300K", "H302Y", "N304T", "S306N", "N311R", "E312D", "-318R", "-319T", "E323K", "-324L", "N334T", "S337A", "T365M", "-367L", "-368F", "-376G", "-377T", "-378T", "-379N", "N414Q", "K418I", "N433S", "N434G", "N435G", "T436N"], "gp41": ["S42N", "V69I", "T101A", "Y108F", "D109N", "Y132F", "S133N", "N166K", "M176I", "T210I", "Q213R", "R221G", "Q229R", "R231K", "I264T", "V290L", "L304I", "I307V", "V321G", "A325I", "A343I", "L345V"], "nef": ["K4R", "I10R", "P14S", "Q22R", "I43V", "L58V", "E59D", "E62Q", "I101V", "K104Q", "Q105K", "M148L", "D149E", "A151E", "N157T", "M173I", "E176A", "E201D"], "p1": ["N9S"], "p17": ["K28Q", "R30K", "K62G", "Q65H", "K76R", "V94I", "K114T", "T115I", "M120K", "D121N", "E122T"], "p2": ["S5N", "A10T", "A12M", "I13-"], "p24": ["T54S", "T58I", "E79D", "Q86P", "T171A", "N183G", "D187E", "V191A"], "p6": ["F15L", "S47N"], "p7": ["K3R"], "rev": ["S7N", "E11D", "I18T", "K39R", "T62A", "P67F", "A68E", "G96Q", "P100S", "S106P", "S107P", "G108A"], "tat": ["L8I", "K19Q", "V29R", "T58P", "G61S", "P75S", "R78G"], "vif": ["V31I", "K36G", "G37K", "D61E", "V65I", "H83Q", "Q136P", "T155A", "K158R", "K160R", "R167K"], "vpr": ["I63M", "I84L", "Q86R", "G94S"], "vpu": ["E29L", "K37R", "L43I", "-68M", "V69-"]}, "labels": {"aa": "INT: E11D, S24N, N27C, I84M, Y227F, C280S; RT-p51: I60V, K104R, D123S, S162A, K173R, K174R, E207G, K277R, A286T, S379G, V381I; RT-p66: I60V, K104R, S162A, K173R, K174R, E207G, K277R, A286T, S379G, V381I, S491P, L517V, S554N; gp120: D19E, D21N, H77Q, -105E, -106K, N108M, -109R, T110-, E125-, I126-, K127-, K140R, K141I, L151I, N159S, T172A, S181T, R201K, I249L, N251D, I255T, K262R, N267T, I281F, D294E, D297E, Q300K, H302Y, N304T, S306N, N311R, E312D, -318R, -319T, E323K, -324L, N334T, S337A, T365M, -367L, -368F, -376G, -377T, -378T, -379N, N414Q, K418I, N433S, N434G, N435G, T436N; gp41: S42N, V69I, T101A, Y108F, D109N, Y132F, S133N, N166K, M176I, T210I, Q213R, R221G, Q229R, R231K, I264T, V290L, L304I, I307V, V321G, A325I, A343I, L345V; nef: K4R, I10R, P14S, Q22R, I43V, L58V, E59D, E62Q, I101V, K104Q, Q105K, M148L, D149E, A151E, N157T, M173I, E176A, E201D; p1: N9S; p17: K28Q, R30K, K62G, Q65H, K76R, V94I, K114T, T115I, M120K, D121N, E122T; p2: S5N, A10T, A12M, I13-; p24: T54S, T58I, E79D, Q86P, T171A, N183G, D187E, V191A; p6: F15L, S47N; p7: K3R; rev: S7N, E11D, I18T, K39R, T62A, P67F, A68E, G96Q, P100S, S106P, S107P, G108A; tat: L8I, K19Q, V29R, T58P, G61S, P75S, R78G; vif: V31I, K36G, G37K, D61E, V65I, H83Q, Q136P, T155A, K158R, K160R, R167K; vpr: I63M, I84L, Q86R, G94S; vpu: E29L, K37R, L43I, -68M, V69-"}}}, {"name": "G_NODE_0000009", "node_attrs": {"div": 0.11254999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A303T", "C362T", "A571T", "T602C", "G614A", "G647A", "G712A", "T760C", "G770A", "C988A", "C1005G", "A1271T", "G1278A", "G1279A", "-1446G", "C1447G", "G1450C", "C1453G", "C1724T", "A1762C", "A1771G", "G1781A", "A1784G", "G1794A", "C1873T", "G1972A", "T1986C", "A2241G", "G2463A", "G2704A", "G2714A", "G3004A", "T3068A", "G3094A", "C3095T", "G3221T", "A3490G", "A3491G", "G3718A", "A3802G", "G3808A", "T3898C", "A4111G", "T4991C", "A5164G", "C5655T", "A5665T", "G5791-", "C5792-", "A5793-", "C5795-", "A5796-", "C5797-", "T5798-", "T5801A", "A5805G", "A5806T", "-5810C", "G5811A", "-5813T", "-5814G", "-5815G", "-5816A", "-5818A", "-5819T", "-5821G", "-5822G", "-5823G", "-5824G", "C5974T", "-6170G", "-6172A", "-6173A", "-6174A", "-6202C", "T6322C", "A6335-", "C6396A", "C6403A", "A6490C", "A6602T", "G6628A", "A6668G", "A6669G", "G6743A", "T6745C", "A6781T", "T6792C", "G6793A", "T6835G", "-6948C", "-6987A", "-7005A", "C7012A", "C7020A", "T7107A", "C7127A", "T7144A", "G7168A", "G7276A", "C7313A", "A7677G", "G7759A", "C7936T", "A7938G", "C7969A", "A8032T", "T8279G", "A8294C", "A8317G", "C8499A", "A8555G", "T8741C", "C8751T", "T8779A", "A8870T", "C8934A", "T8935A", "G8936A", "C9028T", "A9134-"], "RT-p51": ["K49R", "E207N", "L325I", "A376S"], "RT-p66": ["K49R", "S123D", "E207N", "L325I", "A376S", "I466V"], "gp120": ["-106V", "I126M", "S181N", "D183E", "K212N", "T250S", "N267I", "N272G", "D297N", "M313T", "-326K", "P389Q", "L425I"], "gp41": ["H212R", "N331H"], "nef": ["V146E", "E176D", "L198K"], "p17": ["Y79F", "S126N"], "p2": ["A10G"], "p24": ["M10P", "P92A", "E180D"], "p6": ["Q28P", "K31R", "A39T"], "rev": ["P30S", "T62S"], "tat": ["T76I", "T77A", "S87*"], "vif": ["K159R", "*193W"], "vpu": ["F16S", "I20L", "T66K"]}, "labels": {"aa": "RT-p51: K49R, E207N, L325I, A376S; RT-p66: K49R, S123D, E207N, L325I, A376S, I466V; gp120: -106V, I126M, S181N, D183E, K212N, T250S, N267I, N272G, D297N, M313T, -326K, P389Q, L425I; gp41: H212R, N331H; nef: V146E, E176D, L198K; p17: Y79F, S126N; p2: A10G; p24: M10P, P92A, E180D; p6: Q28P, K31R, A39T; rev: P30S, T62S; tat: T76I, T77A, S87*; vif: K159R, *193W; vpu: F16S, I20L, T66K"}}, "children": [{"name": "MH705145", "node_attrs": {"div": 0.15327, "accession": "MH705145", "clade_membership": {"value": "G"}, "country": {"value": "CM"}, "date": {"value": 2005.0}, "Strain_name": {"value": "144_26"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C48T", "A49T", "G52A", "A265G", "A302T", "G354A", "G395A", "G424A", "G480A", "G481A", "G495A", "T503C", "T525C", "C539T", "C587A", "G615A", "G653A", "A659G", "C691G", "A693G", "T694A", "G695A", "T698A", "A700G", "A701-", "G702-", "G703-", "A704-", "A705-", "A706-", "C713T", "C719T", "A759T", "G761A", "G977A", "T979C", "T1052C", "G1064A", "G1078T", "G1090A", "T1214C", "A1265C", "G1313A", "G1328A", "C1334T", "C1403T", "A1404G", "T1409C", "T1421G", "C1459G", "A1474G", "A1476G", "A1586G", "C1610T", "A1616C", "A1643G", "A1644C", "T1646C", "A1657G", "T1676C", "G1691A", "T1722C", "G1734A", "T1752G", "T1903C", "G1968A", "T1978C", "C1979A", "C1985T", "A1988G", "A2002G", "A2006C", "T2011C", "A2122T", "C2149G", "G2155A", "A2215T", "A2305G", "A2341G", "A2344G", "A2374G", "G2431A", "G2459A", "C2464T", "C2485T", "G2539A", "A2614G", "T2672C", "A2728G", "C2857T", "T2890C", "A2938G", "G2951A", "A2989G", "C3013T", "A3043G", "A3067C", "A3082G", "A3163G", "G3165A", "C3194G", "A3204C", "A3217G", "A3230G", "A3264G", "C3275A", "G3316A", "C3322T", "C3377A", "G3379A", "T3469C", "A3487G", "C3500T", "G3556A", "A3622G", "C3668T", "G3694A", "G3756A", "A3769G", "A3794G", "G3834A", "A3862G", "T3924C", "A3955G", "T3977C", "C3995T", "T4075C", "A4084G", "C4132T", "C4149T", "G4228A", "C4258A", "T4291C", "C4381T", "A4498G", "C4501T", "A4567G", "C4576T", "C4679A", "T4712C", "C4715T", "G4737T", "C4761T", "G4767A", "T4769G", "C4771A", "G4779A", "A4790C", "T4799C", "G4859C", "G4864A", "C4898T", "T4912A", "G4923A", "T4940C", "T4959C", "A4980G", "G4981T", "A4988G", "C4992A", "A4993C", "C5019T", "G5046A", "T5078C", "C5125T", "G5131A", "T5206C", "C5221T", "A5230G", "C5237T", "A5296G", "A5312G", "T5356C", "G5359T", "G5362A", "T5371C", "C5397A", "C5437T", 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"T6946C", "-6950T", "-6951C", "-6952A", "-6953C", "-6954T", "-6955G", "-6956C", "-6957T", "-6963A", "-6966G", "-6967T", "-6968A", "-6969G", "-6970T", "-6971A", "-6972A", "-6973T", "-6974A", "-6975A", "-6976T", "-6977A", "-6978A", "-6979T", "-6980A", "-6981G", "-6982T", "-6983A", "-6984G", "-6985T", "C6988T", "-7003T", "-7006T", "-7008C", "-7009C", "A7026G", "G7060A", "C7087T", "T7117C", "A7154G", "T7156C", "T7159C", "G7161C", "T7162G", "-7164C", "-7165A", "C7170T", "G7212A", "T7228C", "G7291A", "A7292C", "G7315A", "T7325C", "A7348T", "A7396G", "A7573G", "C7574A", "T7591C", "T7630G", "G7669A", "A7672G", "A7676G", "A7690T", "G7701A", "A7722C", "G7754T", "G7765A", "A7782C", "C7792T", "T7863C", "T7870G", "A7885G", "G7973A", "A7974G", "G7977A", "A8006G", "T8008G", "G8050A", "A8069C", "G8070T", "G8085C", "A8113T", "G8143A", "G8180A", "T8243G", "A8266G", "A8273G", "C8277G", "G8280T", "C8291A", "C8293T", "T8321G", "T8322C", "G8330A", "C8331T", "A8348G", "A8386C", "G8387T", "A8400T", "T8450C", "A8469G", "C8480G", "C8491G", "A8494C", "G8516A", "C8534A", "G8570A", "A8584T", "C8590G", "T8594A", "G8762C", "A8799G", "T8831C", "G8868A", "G8915A", "G8933A", "G8942T", "T8947A", "G9030T", "C9133T", "-9134T", "G9137A"], "INT": ["K7E", "R20K", "M50T", "I60M", "A125V"], "RT-p51": ["E40D", "E122K", "A286T", "E324D", "R357K", "Q367E", "E370A", "S379G", "K390R"], "RT-p66": ["E40D", "E122K", "A286T", "E324D", "R357K", "Q367E", "E370A", "S379G", "K390R", "S554N"], "gp120": ["N5K", "D19N", "D29N", "S37K", "T57P", "E59D", "E74D", "-105T", "-109K", "-111R", "-112E", "P155Q", "N159D", "N161Y", "T172A", "E240D", "E241K", "I242V", "I243M", "I244V", "I255V", "I281F", "D294E", "I295V", "K307R", "K309N", "N311T", "T313A", "-318E", "-319A", "K320A", "G322K", "-324F", "K329-", "N332F", "V343L", "T344V", "R351G", "-367L", "-368L", "S370N", "S373N", "E374N", "-376S", "-377S", "-378N", "-379N", "-384D", "-385T", "K391R", "N434D", "S437T", "T439I", "S453N"], "gp41": ["L4I", "F8L", "L91I", "D109E", "N125G", "Q129H", "S133N", "N140T", "A151S", "N160T", "V187A", "E224R", "G225E", "I235V", "S256L", "R261T", "G293S", "W314G", "R324G", "A325G", "C326V", "L330I", "F340A", "A343I"], "nef": ["I20L", "I43V", "S46R", "T50G", "N51T", "P53T", "D64E", "Y81F", "A83G", "I153V", "D176N", "F202Y"], "p1": ["I5L", "N9S"], "p17": ["V7I", "R30K", "G49N", "A54T", "K62R", "V94I", "A119G", "M120E", "D121E", "E122S", "G123-", "N124-"], "p2": ["A12G"], "p24": ["P10S", "I83T", "R116I", "S120N", "S225G"], "p6": ["F15L", "E19K"], "p7": ["K3R", "S4G"], "pro": ["R57K", "Q61K", "L63S", "I64V", "K70Q"], "rev": ["R14Q", "R42K", "H53R", "S54A", "A68T", "Q74P", "E79D", "S89C", "G99R", "G111E"], "tat": ["N7K", "P21S", "V29K", "N40K", "G57R", "Q60P", "N67D"], "vif": ["V51L", "D61K", "A62D", "V65I", "Q91H", "R93K", "L109Q", "D113N", "S132V", "Q136T", "V154I", "T180I", "G182D"], "vpr": ["H45Y", "I70V", "I84T", "R85L", "V89A"], "vpu": ["P3T", "E5Q", "I13V", "V21I", "F27L", "E32K", "K41E", "T61A", "M71I"]}, "labels": {"aa": "INT: K7E, R20K, M50T, I60M, A125V; RT-p51: E40D, E122K, A286T, E324D, R357K, Q367E, E370A, S379G, K390R; RT-p66: E40D, E122K, A286T, E324D, R357K, Q367E, E370A, S379G, K390R, S554N; gp120: N5K, D19N, D29N, S37K, T57P, E59D, E74D, -105T, -109K, -111R, -112E, P155Q, N159D, N161Y, T172A, E240D, E241K, I242V, I243M, I244V, I255V, I281F, D294E, I295V, K307R, K309N, N311T, T313A, -318E, -319A, K320A, G322K, -324F, K329-, N332F, V343L, T344V, R351G, -367L, -368L, S370N, S373N, E374N, -376S, -377S, -378N, -379N, -384D, -385T, K391R, N434D, S437T, T439I, S453N; gp41: L4I, F8L, L91I, D109E, N125G, Q129H, S133N, N140T, A151S, N160T, V187A, E224R, G225E, I235V, S256L, R261T, G293S, W314G, R324G, A325G, C326V, L330I, F340A, A343I; nef: I20L, I43V, S46R, T50G, N51T, P53T, D64E, Y81F, A83G, I153V, D176N, F202Y; p1: I5L, N9S; p17: V7I, R30K, G49N, A54T, K62R, V94I, A119G, M120E, D121E, E122S, G123-, N124-; p2: A12G; p24: P10S, I83T, R116I, S120N, S225G; p6: F15L, E19K; p7: K3R, S4G; pro: R57K, Q61K, L63S, I64V, K70Q; rev: R14Q, R42K, H53R, S54A, A68T, Q74P, E79D, S89C, G99R, G111E; tat: N7K, P21S, V29K, N40K, G57R, Q60P, N67D; vif: V51L, D61K, A62D, V65I, Q91H, R93K, L109Q, D113N, S132V, Q136T, V154I, T180I, G182D; vpr: H45Y, I70V, I84T, R85L, V89A; vpu: P3T, E5Q, I13V, V21I, F27L, E32K, K41E, T61A, M71I"}}}, {"name": "MN153484", "node_attrs": {"div": 0.15911999999999998, "accession": "MN153484", "clade_membership": {"value": "G"}, "country": {"value": "CM"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05CMBDSH19"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A133T", "T135A", "G137-", "A138-", "G139-", "A140-", "T141-", "C142-", "C143-", "T145G", "C150G", "C151T", "C153-", "T154-", "C155-", "T156-", "A157-", "G158-", "A159-", "C160-", "A161-", "G162-", "T163-", "G164-", "T165-", "A166-", "A168-", "A169-", "A170-", "A171-", "T172-", "C173-", "T174-", "C175-", "T176-", "A177-", "G178-", "T200C", "G256A", "-304T", "A399C", "A417C", "C456A", "G461A", "G495T", "G520A", "C540A", "A562G", "A607G", "A652G", "T655G", "A660C", "A665G", "A699G", "C710T", "C722T", "A752G", "A759C", "G762A", "A774C", "A791G", "A803G", "G810A", "T858C", "C936T", "A978G", "A980G", "A988G", "G1031T", "T1058C", "C1061A", "C1062T", "A1074G", "A1112T", "T1166C", "G1184A", "G1192A", "C1295T", "G1313T", "C1316T", "T1335C", "A1361C", "G1419A", "T1421C", "T1427C", "C1444T", "A1448T", "G1526A", "C1536T", "A1544G", "G1619A", "T1681C", "T1682C", "A1687G", "C1692A", "A1712T", "T1752A", "C1756A", "G1773A", "A1776G", "T1796C", "C1833A", "A1834T", "A1841G", "G1846A", "C1864T", "A1894G", "A1907G", "T1978G", "A1994G", "T1997G", "G1998A", "T1999G", "G2017T", "A2042G", "C2044T", "G2056A", "A2057C", "T2080C", "C2149T", "C2211A", "T2237A", "C2296T", "T2323C", "G2332A", "C2353T", "T2383C", "A2422G", "T2440C", "C2452T", "T2488C", "T2503C", "G2518A", "T2521C", "A2524G", "T2542C", "C2584T", "A2592G", "G2600C", "A2614C", "C2671T", "G2682A", "C2776T", "A2818G", "A2821G", "G2837A", "A2845T", "T2863C", "A2920G", "A2925G", "G2950A", "C2960T", "A3027G", "C3100T", "A3103G", "C3178T", "A3208G", "C3223G", "T3253C", "T3271C", "A3307C", "C3359T", "A3364G", "G3378A", "A3442C", "G3457A", "C3498A", "C3499T", "A3532G", "A3583G", "T3644G", "A3684G", "A3775G", "A3835G", "G3836A", "T3967C", "C4006T", "A4130C", "G4131C", "C4132A", "A4178G", "C4216T", "G4306A", "A4315T", "A4338G", "G4366A", "A4390C", "A4420G", "C4471T", "C4534T", "A4539G", "C4540T", "A4543T", "G4549A", "G4573A", "A4592C", "G4637A", "A4664G", "C4679T", "G4695A", "A4697G", "A4735G", "A4766G", "C4774G", "A4775C", "C4776T", "A4781G", "A4816G", "G4829A", "C4833A", "G4856A", "A4858G", "A4865G", "C4871T", "A4892G", "G4904A", "C4914T", "C4937A", "A4967C", "G4982T", "G4995A", "A5059G", "T5073C", "G5123A", "T5162C", "C5168G", "A5176G", "G5226A", "A5240G", "A5246G", "C5333T", "T5357A", "C5361G", "T5371G", "A5372C", "G5376A", "C5382G", "T5412A", "G5421A", "T5457C", "G5463A", "A5537C", "A5548C", "T5602A", "C5614T", "G5635A", 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K166R, E169Q, K173N, G196E, D248N, E250D, K277R, K311R, E404D, R428Q; RT-p66: T39K, S48T, K166R, E169Q, K173N, G196E, D248N, E250D, K277R, K311R, E404D, R428Q, E449D, T468N, L517V, K530R; gp120: S1N, D4G, N5-, D21E, A32S, T57S, -105M, D107N, -109S, I133V, I137L, K141R, E144V, K150R, N157H, N160T, N161-, T162-, N204R, R245K, S263P, F289I, I298T, Q300K, H302S, N304K, S306N, K307Q, K309L, E312K, K316N, -318K, -319V, -324I, N328-, T344K, N358D, S372T, N375E, -376N, A412E, N432P, T436-, G443A, R472K; gp41: L4M, G5A, V30A, S107N, Y108L, D109S, E110D, N125S, Q130H, N140S, K172R, I173L, V187I, G226D, D232G, R233K, R259H, I264V, G281S, W286G, V290I, K297T, N298T, I301V, N302T, L304F, D305N, T306A, I307T, A310T, N313G, V321I, V322A, C326G, F329V, F340L; nef: A15Q, P53A, C55R, L76M, M148V, V182R, I194L; p17: K28Q, L41M, A54S, Q69K, K76R, K91R, K106R, I107R, K109Q; p2: A7V; p24: V11I, I15L, V27I, I83V, Q86R, R100S, I115V, R154K, V230I; p6: L1P, N3S, P5T, P23-, A24P, P25T, -26Q, E32K, K33E, Q52M; pro: T12N, I15V, N37D, D60E, L63P, I66V, C67E, I82V; rev: T8P, E11D, Y28H, P31S, H53N, L73F, H82C, G96Q, G99E, P100S, I102V, S103P, V104G, S107P, G108D, V109I, S112A, K115N, E116N; tat: D2E, N12K, H54P, T58P, L74S, A77V; vif: E2D, G37R, K50R, T63S, K77R, H83N, Q91R, H110Y, D117E, Q127H, A137T, K158R; vpr: D7N, L22V, G41D, I46V, N48D, Q86G, V89G, D91N, P93A; vpu: P3S, V10I, L12I, I25L, V26I, F27Y, I28V, E29L, K37R, K38T, E40G, E70D, P76A"}}}]}]}, {"name": "G_NODE_0000010", "node_attrs": {"div": 0.09809999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G43A", "A654G", "A699G", "C1094T", "C1211T", "T1535C", "G1763A", "A1775-", "A1784-", "T1785-", "C2644T", "C2723T", "A2727G", "A2728C", "G2842A", "T3252C", "C3415T", "A3931C", "T4079C", "A4105G", "A4455T", "C4820T", "C4965G", "G5556A", "-6179G", "A6333G", "A6583G", "T6794A", "G6819A", "A6841G", "-6956T", "-7005A", "-7008C", "-7165T", "G7182C", "G7658C", "A8222G", "A8284G", "G8528A"], "INT": ["Y227F"], 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RT-p66: K49R, S123G, S162C, M178I, E250D, K275Q, V276T, A286T, E324D, V329I, D335G, V371A, E404D, D413E, R461K, S534A; gp120: V16A, S37K, N52H, P57S, E59V, -105N, -106A, -107K, V109R, T110S, -112D, -114S, N132R, I133V, I137L, K141E, K143Q, K150R, I156L, N158V, N159S, S181T, E241G, A253V, I255N, L260F, N267T, A291T, T292E, K307R, T308E, K309N, N311T, E312Q, Q315K, K316R, V317I, -318L, K320-, L321-, E323-, F325-, I331D, -372W, -373S, -374S, -375S, -376G, -379G, -380T, -381S, -384G, T385S, K391R, N433E, N434T, N435E, T436P, N437T, A443T, E481G; gp41: V7F, F8L, A14T, Y108F, N125S, Q130H, I135L, L152F, S165T, K172R, E220G, R221E, R231K, I235V, Q294R, N302S, V307I, A325T, L330-, N331-, I332-, P333-, R334-, R335-, Q338*, F340L, E341K, R342G; nef: S8R, V16I, T48E, A50-, N51-, C55K, E62Q, F120Y, V146E, H171G, M173I, E176K, I194V, E201D; p17: G11D, D14E, A15E, M31V, V35I, M61I, N62S, E93R, S111G, Q112T, T115R, A118T, D121N, S125N, S126N; p2: A7I; p24: E75D, S225G; p6: F15L, E19G, K31N, E34-, L35-, Y36-, A39V, S47N; p7: P9L, R10K, N12K; pro: T12P, L19I, N37S; rev: S7D, D9E, R17K, Y23N, E32A, K39R, S54A, P67S, A68T, C85S, S103L; tat: K53R, G61S, V69E, R78S, K85E, E86K; vif: V31N, K36R, G37N, Y44F, R47M, K50R, D61E, L64I, H80Q, L109V, D113N, K141Q, T155K, K160R, N186S; vpr: N28H, I84L, P85R, Q86-, P93S, G94S, S96P; vpu: P3S, E5D, I13V, F27L, Q36E, E40G, E70D, D75E"}}}, {"name": "G_NODE_0000012", "node_attrs": {"div": 0.11152999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["T422C", "G534T", "G647A", "T694G", "G695A", "G941A", "A980G", "C1331T", "G1562A", "A1580G", "G1619A", "T1682C", "C1712T", "-1775G", "-1782C", "G1794A", "C2266T", "G2462A", "G2984A", "T3121C", "T3349C", "A3643G", "C3691T", "A4231G", "C4803A", "A5055C", "A5185G", "A5272G", "G5972A", "C6004T", "-6214A", "-6218G", "-6219A", "A6232G", "A6329G", "A6332G", "G6456A", "G6457T", "A6599T", "A6773G", "A6786G", "-6831A", "T6835A", "G6935A", "T6958-", "-6984C", "-7006A", "-7009A", 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{"value": "KE"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06KE275457V6"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G409A", "C456T", "G461A", "G480A", "G495A", "G520A", "T536C", "A556G", "C558A", "G641T", "G642A", "G654A", "G671A", "C672G", "G699A", "A700C", "A730T", "T852A", "T884C", "C902T", "G911A", "T979C", "A989G", "A1002C", "C1008G", "C1009T", "A1017C", "A1077G", "G1078C", "A1079T", "C1088T", "C1091A", "T1094C", "T1100C", "G1109A", "A1134G", "C1137A", "T1211G", "T1214C", "G1227A", "G1279A", "C1280T", "A1307G", "A1418G", "T1451G", "G1487A", "A1496G", "A1538G", "A1586C", "T1598C", "G1604A", "C1610A", "G1673A", "A1709T", "C1724T", "G1760A", "G1773A", "A1776G", "G1781A", "-1784A", "-1785T", "T1797G", "C1826T", "C1873T", "A1879G", "A1882G", "A1897G", "G1901A", "T1903A", "G1924A", "A2005G", "A2042G", "G2055A", "G2056A", "T2071A", "G2111A", "A2113T", "G2143A", "A2176C", "T2206C", "A2215C", "T2236C", "A2241G", "A2243G", "A2254T", "C2353T", 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"C6238T", "G6267A", "T6287A", "C6289T", "G6303A", "A6324C", "G6379A", "G6392A", "A6481T", "T6493G", "A6525G", "A6574G", "G6575A", "G6583A", "T6590A", "T6600C", "A6602T", "G6638A", "A6644G", "A6654C", "T6655G", "A6668G", "A6669G", "C6670T", "-6698G", "-6699G", "-6700G", "-6701C", "-6702C", "-6703A", "C6708A", "G6711T", "A6712G", "C6713-", "A6714-", "A6715-", "G6716-", "C6717-", "G6718-", "G6732A", "T6745C", "C6752A", "C6758T", "A6759T", "A6764C", "T6769A", "G6771A", "G6774A", "A6781G", "T6787G", "G6790C", "G6799A", "A6806-", "G6809A", "C6810G", "A6811C", "A6813C", "C6815A", "T6816C", "A6817T", "A6819G", "A6823T", "T6825G", "C6826T", "T6827C", "-6830T", "-6832A", "A6833C", "T6838C", "G6841A", "A6842-", "C6843-", "A6848T", "A6854C", "C6875A", "A6881C", "T6883C", "A6907G", "A6934T", "C6938T", "A6947G", "-6948A", "T6956-", "-6963T", "-6966C", "-6967A", "-6968C", "-6969A", "-6970T", "-6971A", "-6972A", "-6973T", "-6974A", "-6975A", "-6976T", "-6977A", "-6978G", "-6979T", "-6980G", "-6981C", 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["A33T", "E69K", "G106A", "A124T", "A125V"], "RT-p51": ["E6N", "M16I", "E40D", "K49R", "I50V", "E53D", "E89K", "K166Q", "R172K", "I173K", "K174E", "D192N", "E203K", "E204K", "S211R", "E224K", "K275Q", "V293I", "P321S", "V365I", "V371L", "A376C", "T386I", "K390R", "E404D"], "RT-p66": ["E6N", "M16I", "E40D", "K49R", "I50V", "E53D", "E89K", "K166Q", "R172K", "I173K", "K174E", "D192N", "E203K", "E204K", "S211R", "E224K", "K275Q", "V293I", "P321S", "V365I", "V371L", "A376C", "T386I", "K390R", "E404D", "I467V", "L469I", "Q509H", "Q520L", "S534A"], "gp120": ["N5T", "D21N", "T22P", "T23I", "N52S", "P57S", "E74D", "H77N", "K93R", "L94I", "-105T", "-106V", "-107T", "-112N", "R138K", "Y145N", "N157T", "N159D", "Y163S", "R164K", "V180M", "E204K", "N213K", "K224R", "E241K", "M243I", "S246T", "I249S", "T250S", "E262K", "I264V", "N267T", "N272G", "A288V", "G293D", "Q300K", "H302F", "N304H", "S306N", "K307E", "E312D", "L314I", "Q315-", "K316Q", "V317K", "T330-", "I332S", "N334H", "L341I", "I343L", "-365D", "-369N", "-370I", "-371T", "-372H", "-373N", "-374N", "-375S", "-376A", "-377S", "-379N", "-380N", "I386-", "N414E", "I415L", "N432T", "N433H", "T436K", "N437S", "T439I", "R448K", "E454K", "E481K"], "gp41": ["V30A", "S42N", "P98L", "D113K", "I135L", "N140Y", "A156T", "G200E", "E215G", "G225E", "D230G", "A267V", "V290L", "Q294R", "L304F", "I321A", "V322I", "A325T", "F340A"], "nef": ["P25A", "A49P", "N51T", "P53A", "D54A", "A83G", "Q104R", "Q105R", "D108E", "F120Y", "V146E", "I153V", "K158T", "M173A", "I194L"], "p17": ["G25E", "G49S", "E74G", "L75I", "E102D", "E103K", "A107I", "Q113E", "V115I", "E122T", "Y132F"], "p24": ["S41T", "I83T", "I91L", "P93V", "I96L", "R116A", "S120R", "I135V", "L136M", "D166N"], "p6": ["-32K", "-33E", "S40A"], "p7": ["M46I", "D48E"], "pro": ["D35K", "W42*", "I82V", "G86E"], "rev": ["A15V", "I18T", "H53N", "T62S", "G96Q", "G99R", "G108T"], "tat": ["V29K", "V36I", "K63A", "V69I", "N80D"], "vif": ["A35G", "K36S", "G37R", "E45Q", "K63M", "D78A", "H80Y", "N140S", "I159T", "N186S", "T188I", "*193W"], "vpr": ["D7N", "P37T", "H45Y", "L67I", "I84T", "Q86R", "D91N", "G94S"], "vpu": ["E5T", "T24A", "R31W", "L42I", "E62D", "T66K", "D75A"]}, "labels": {"aa": "INT: A33T, E69K, G106A, A124T, A125V; RT-p51: E6N, M16I, E40D, K49R, I50V, E53D, E89K, K166Q, R172K, I173K, K174E, D192N, E203K, E204K, S211R, E224K, K275Q, V293I, P321S, V365I, V371L, A376C, T386I, K390R, E404D; RT-p66: E6N, M16I, E40D, K49R, I50V, E53D, E89K, K166Q, R172K, I173K, K174E, D192N, E203K, E204K, S211R, E224K, K275Q, V293I, P321S, V365I, V371L, A376C, T386I, K390R, E404D, I467V, L469I, Q509H, Q520L, S534A; gp120: N5T, D21N, T22P, T23I, N52S, P57S, E74D, H77N, K93R, L94I, -105T, -106V, -107T, -112N, R138K, Y145N, N157T, N159D, Y163S, R164K, V180M, E204K, N213K, K224R, E241K, M243I, S246T, I249S, T250S, E262K, I264V, N267T, N272G, A288V, G293D, Q300K, H302F, N304H, S306N, K307E, E312D, L314I, Q315-, K316Q, V317K, T330-, I332S, N334H, L341I, I343L, -365D, -369N, -370I, -371T, -372H, -373N, -374N, -375S, -376A, -377S, -379N, -380N, I386-, N414E, I415L, N432T, N433H, T436K, N437S, T439I, R448K, E454K, E481K; gp41: V30A, S42N, P98L, D113K, I135L, N140Y, A156T, G200E, E215G, G225E, D230G, A267V, V290L, Q294R, L304F, I321A, V322I, A325T, F340A; nef: P25A, A49P, N51T, P53A, D54A, A83G, Q104R, Q105R, D108E, F120Y, V146E, I153V, K158T, M173A, I194L; p17: G25E, G49S, E74G, L75I, E102D, E103K, A107I, Q113E, V115I, E122T, Y132F; p24: S41T, I83T, I91L, P93V, I96L, R116A, S120R, I135V, L136M, D166N; p6: -32K, -33E, S40A; p7: M46I, D48E; pro: D35K, W42*, I82V, G86E; rev: A15V, I18T, H53N, T62S, G96Q, G99R, G108T; tat: V29K, V36I, K63A, V69I, N80D; vif: A35G, K36S, G37R, E45Q, K63M, D78A, H80Y, N140S, I159T, N186S, T188I, *193W; vpr: D7N, P37T, H45Y, L67I, I84T, Q86R, D91N, G94S; vpu: E5T, T24A, R31W, L42I, E62D, T66K, D75A"}}}, {"name": "KF716477", "node_attrs": {"div": 0.16170999999999996, "accession": "KF716477", "clade_membership": {"value": "G"}, "country": {"value": "KE"}, "date": {"value": 2009.0}, "Strain_name": {"value": "DEMG09KE001"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["T217C", "A302T", "-305T", "G354A", "A360C", "A388G", "A426C", "G428A", "C435T", "G481A", "C496A", "T503A", "C521G", "C558G", "A592G", "T593G", "A604G", "A605C", "A619G", "T655C", "A677C", "A678G", "A692C", "T698C", "A700G", "G709A", "A735G", "A791G", "T808C", "T830C", "T852G", "C853T", "G968A", "C1005G", "A1077C", "G1078A", "A1101G", "G1139A", "T1181A", "G1232A", "T1238C", "A1241G", "A1242G", "C1243T", "A1263T", "T1296C", "C1316T", "A1319T", "G1339A", "C1351A", "A1361G", "A1433C", "A1448-", "G1449-", "G1450-", "G1452C", "C1453T", "G1455C", "G1458T", "C1478T", "T1481C", "C1490T", "A1501C", "T1559C", "T1574C", "A1588G", "G1592A", "G1661A", "G1664A", "T1728C", "G1766C", "C1768A", "A1774G", "A1777G", "T1783C", "A1786-", "T1903G", "A1908G", "A1927G", "G1972A", "A1997G", "T1999G", "A2002G", "G2008A", "T2080C", "A2185G", "A2191G", "A2240G", "A2305G", "A2341G", "T2347C", "G2392T", "A2416T", "T2440C", "A2498G", "T2503C", "T2520A", "T2521G", "A2524G", "C2533T", "T2542G", "A2572C", "A2613T", "A2626C", "A2677G", "C2694A", "G2714A", "G2725A", "T2737C", "A2743C", "A2821G", "C2839A", "A2842G", "A2845G", "A2929G", "C2968T", "T2983C", "A3031G", "A3043G", "C3100T", "A3259G", "T3271C", "T3310C", "T3355C", "G3378A", "A3386G", "A3409G", "G3427A", "T3449G", "G3467A", "G3477A", "A3524T", "T3530C", "A3535T", "C3559T", "A3571G", "A3637C", "A3646G", "C3653A", "A3655G", "A3703G", "G3718A", "G3756A", "G3916A", "C3922T", "C3931T", "A3989G", "C3995A", "T4039C", "A4051G", "A4064G", "T4085C", "A4087G", "C4140T", "G4156A", "C4261T", "C4270T", "A4293G", "A4375G", "T4455A", "C4534T", "T4537C", "A4543C", "G4549A", "A4717T", "T4769G", "A4774C", "G4782A", "G4786A", "T4793C", "T4799C", "C4826A", "T4868C", "G4870T", "C4890T", "G4923A", "C4925T", "T4940C", "C4943A", "T4959A", "A4967G", "G4981A", "C5050G", "C5052A", "T5072C", "T5073C", "T5078C", "A5085C", "A5090G", "C5115T", "C5125T", "A5134G", "C5146T", "A5155C", "C5168T", "C5215T", "A5268C", "G5362A", "A5400G", "T5412G", "T5415C", "A5432G", "G5448T", "T5457C", "G5482C", "C5508A", "C5511T", "A5544G", "G5545A", "A5548G", "C5551T", "A5555C", "A5587G", "G5599T", "T5602G", "T5604G", "G5629T", "A5652T", "A5656T", "T5666C", "A5727T", "A5729G", "C5734T", "T5735A", "T5778C", "G5784A", "T5787A", "A5788T", "C5789T", "A5790G", "G5794A", "A5796G", "-5799T", "A5804G", "T5807G", "-5810G", "T5813C", "-5814T", "A5825-", "C5826-", "A5865T", "T5923C", "G5964A", "C5965A", "A6013T", "A6020T", "G6028A", "G6029A", "A6030C", "C6067T", "G6149A", "-6172T", "-6174A", "-6175A", "G6179A", "-6180A", "A6185G", "T6187G", "A6188T", "A6192C", "-6195A", "-6198G", "-6212A", "-6213C", "-6215G", "-6216T", "-6217G", "-6220G", "A6221G", "-6222C", "A6223C", "G6224A", "A6234C", "A6249C", "A6275C", "A6283T", "A6304G", "C6305G", "T6306A", "G6314A", "T6315C", "C6318A", "A6324G", "T6325G", "T6331G", "T6340C", "T6395A", "C6412A", "G6466T", "A6471C", "C6482T", "A6488C", "C6501T", "G6532A", "A6547G", "G6638C", "A6641T", "A6679C", "A6686G", "A6692G", "A6706G", "G6716A", "C6733A", "A6779G", "A6780C", "T6787A", "G6788A", "G6790T", "A6796G", "A6800G", "A6801G", "G6802A", "A6818G", "A6822G", "-6830A", "-6832T", "A6834C", "A6837G", "C6844A", "T6857A", "T6860C", "C6862T", "T6863G", "A6887G", "G6906A", "G6940A", "-6948T", "T6949G", "-6950A", "-6951C", "-6952A", "-6953G", "-6954A", "-6955A", "-6957T", "-6958A", "A6959-", "A6960-", "T6961-", "A6962-", "T6964-", "A6965-", "-6982G", "-6983A", "-6985A", "-6996C", "-6998G", "-6999G", "-7000C", "-7003T", "T7024C", "G7060A", "C7089A", "A7090G", "A7108C", "T7117C", "C7124T", "A7129G", "T7144G", "G7147T", "A7148G", "T7150A", "A7158G", "T7159C", "A7161C", "-7164A", "T7165C", "A7186T", "G7198A", "G7235A", "A7239G", "T7243C", "A7303G", "T7309A", "C7313G", "G7333A", "G7340T", "G7341C", "A7523G", "A7527T", "C7528T", "C7561T", "T7565A", "A7583C", "T7630G", "G7631C", "T7642A", "C7651T", "T7656C", "G7669A", "A7677G", "C7691G", "C7702G", "G7712A", "A7714T", "A7722C", "A7734T", "G7735A", "T7775C", "T7789G", "G7790A", "A7791G", "T7796A", "A7818G", "T7913C", "A7953G", "A7989G", "G7995A", "A8032G", "G8055A", "A8069C", "G8070T", "A8099C", "C8120-", "T8121-", "T8122-", "A8130T", "C8131G", "G8135A", "G8137T", "T8182G", "T8243G", "A8248T", "G8264A", "A8269G", "A8294C", "A8323T", "A8329C", "C8336T", "A8342G", "G8349A", "G8350A", "T8366C", "C8369T", "A8370G", "G8385C", "A8407G", "A8409T", "C8411T", "A8425C", "T8440C", "A8453G", "G8458A", "A8465G", "A8474G", "T8498C", "G8526C", "A8528G", "G8531C", "T8582C", "C8603T", "A8652C", "A8660G", "C8675T", "A8699G", "T8711C", "C8740T", "G8798A", "A8814G", "A8824G", "C8825A", "G8830C", "A8837G", "G8868A", "A8869G", "G8870T", "A8874C", "G8887A", "C8937T", "T8947A", "G8955A", "C8964T", "C8966T", "C9014T", "G9016A", "G9030T", "C9097T"], "INT": ["I72V", "L74M", "T97A", "T122I", "K173R", "I200M", "F227Y", "E256D"], "RT-p51": ["K49E", "I135V", "I142K", "E177D", "A200E", "E207K", "D248E", "E324D", "R428Q", "T431A"], "RT-p66": ["K49E", "I135V", "I142K", "E177D", "A200E", "E207K", "D248E", "E324D", "R428Q", "T431A", "L452V", "V458I", "R461K", "T477S", "Q480H", "E514D", "Q520K", "S554N"], "gp120": ["N4I", "S37K", "E59T", "V99I", "N111S", "-112T", "T115E", "-116S", "-117T", "-118N", "-119S", "-120T", "-121V", "-122E", "-123A", "G124K", "K127T", "N132T", "K141Q", "K143N", "K150R", "L151D", "V154T", "P155Q", "N157R", "N159E", "S181T", "E204N", "N206T", "P210S", "K212Q", "T216I", "I249F", "E262Q", "T263S", "S278G", "R280G", "A288T", "I294A", "K307G", "K309A", "E312N", "L314M", "K316G", "-318K", "-319A", "-322E", "E323G", "-324I", "-326N", "-327T", "N328S", "I331N", "S335T", "S336P", "S337A", "T345A", "R351K", "-365M", "-366T", "-367E", "-368L", "-384E", "A412E", "N414K", "K418N", "N432E", "N435S", "V461I", "K462R"], "gp41": ["L4V", "G13S", "R74G", "Y75F", "S88T", "T94P", "D109E", "E110Q", "D113E", "I118T", "N125S", "Q130E", "S133R", "E137N", "N140T", "K144I", "F162L", "D163S", "S165T", "K172R", "D217G", "Q229R", "R231K", "S251N", "S256L", "I266L", "L274G", "G275L", "G278S", "W314G", "N331H", "R342S"], "nef": ["G3N", "I10V", "E15Q", "Q22R", "E28A", "V33A", "R39K", "E62Q", "E63D", "Q105K", "T133I", "K158E", "N161R", "S163T", "E176S", "R182K", "H199Y", "F202Y", "D205N"], "p17": ["V7I", "S9R", "K18R", "M31L", "G49D", "T54E", "N62R", "L75V", "Y86W", "Q90R", "K95R", "K114N", "E122G", "S125N"], "p2": ["G9L", "A10P", "A11S", "A12-"], "p24": ["I2V", "V26A", "S41V", "I83M", "P92A", "R116Q", "I124V", "T171V", "T178S", "N183S", "R203K", "P207Q"], "p6": ["F17L", "K31-", "E34-", "L35-", "Y36-"], "p7": ["N12T", "K41R"], "pro": ["D35E", "N37S", "S67G"], "rev": ["E10G", "K14Q", "T62A", "Q74P", "D84A", "S92G", "G93T", "T94E", "Q95T", "G96E", "V97L", "S112A"], "tat": ["N12K", "K19R", "K24N", "V36L", "G57R", "T58A", "P59S", "Q60P", "K71E", "T82A"], "vif": ["Y44F", "D61E", "K63T", "V66I", "R67K", "H80Q", "S95I", "D113N", "L125I", "R132K", "T155R", "P156T", "P177S", "T180I", "H183R", "P187L", "N190T"], "vpr": ["A4V", "E17D", "E55A"], "vpu": ["A8S", "I17L", "I20T", "E40D", "K41R", "L43Y", "T61E", "E70G", "D73A"]}, "labels": {"aa": "INT: I72V, L74M, T97A, T122I, K173R, I200M, F227Y, E256D; RT-p51: K49E, I135V, I142K, E177D, A200E, E207K, D248E, E324D, R428Q, T431A; RT-p66: K49E, I135V, I142K, E177D, A200E, E207K, D248E, E324D, R428Q, T431A, L452V, V458I, R461K, T477S, Q480H, E514D, Q520K, S554N; gp120: N4I, S37K, E59T, V99I, N111S, -112T, T115E, -116S, -117T, -118N, -119S, -120T, -121V, -122E, -123A, G124K, K127T, N132T, K141Q, K143N, K150R, L151D, V154T, P155Q, N157R, N159E, S181T, E204N, N206T, P210S, K212Q, T216I, I249F, E262Q, T263S, S278G, R280G, A288T, I294A, K307G, K309A, E312N, L314M, K316G, -318K, -319A, -322E, E323G, -324I, -326N, -327T, N328S, I331N, S335T, S336P, S337A, T345A, R351K, -365M, -366T, -367E, -368L, -384E, A412E, N414K, K418N, N432E, N435S, V461I, K462R; gp41: L4V, G13S, R74G, Y75F, S88T, T94P, D109E, E110Q, D113E, I118T, N125S, Q130E, S133R, E137N, N140T, K144I, F162L, D163S, S165T, K172R, D217G, Q229R, R231K, S251N, S256L, I266L, L274G, G275L, G278S, W314G, N331H, R342S; nef: G3N, I10V, E15Q, Q22R, E28A, V33A, R39K, E62Q, E63D, Q105K, T133I, K158E, N161R, S163T, E176S, R182K, H199Y, F202Y, D205N; p17: V7I, S9R, K18R, M31L, G49D, T54E, N62R, L75V, Y86W, Q90R, K95R, K114N, E122G, S125N; p2: G9L, A10P, A11S, A12-; p24: I2V, V26A, S41V, I83M, P92A, R116Q, I124V, T171V, T178S, N183S, R203K, P207Q; p6: F17L, K31-, E34-, L35-, Y36-; p7: N12T, K41R; pro: D35E, N37S, S67G; rev: E10G, K14Q, T62A, Q74P, D84A, S92G, G93T, T94E, Q95T, G96E, V97L, S112A; tat: N12K, K19R, K24N, V36L, G57R, T58A, P59S, Q60P, K71E, T82A; vif: Y44F, D61E, K63T, V66I, R67K, H80Q, S95I, D113N, L125I, R132K, T155R, P156T, P177S, T180I, H183R, P187L, N190T; vpr: A4V, E17D, E55A; vpu: A8S, I17L, I20T, E40D, K41R, L43Y, T61E, E70G, D73A"}}}]}]}, {"name": "G_NODE_0000013", "node_attrs": {"div": 0.10209999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G461A", "T473C", "A680-", "T1004C", "C1187T", "G1472A", "T1796C", "G2629A", "A2722G", "G2815A", "G2926A", "A4012G", "C4261T", "A4561G", "A5122G", "A5556C", "G5557A", "T5654G", "A5781G", "-5810G", "-6198C", "-6200G", "-6202C", "-6203A", "-6206A", "-6212A", "-6213T", "-6214A", "-6219A", "A6281C", "G6311A", "T6835C", "-6948G", "-6950A", "-6951G", "-6952T", "-6963G", "-6967T", "-6968A", "-6973T", "T7192C", "G7633A", "G7883A", "T7912C", "C8471T", "G8531A", "C8534T", "T8568C"], "RT-p51": ["I135V", "M178I", "L334Q"], "RT-p66": ["I135V", "M178I", "L334Q"], "gp120": ["K143Q", "V153I", "I332T", "-370S"], "gp41": ["V194I"], "rev": ["P67S"], "vif": ["K179R"], "vpu": ["D60E", "T61L", "E62A", "E63A", "A65V", "T66E", "L67M", "-68G", "V69D", "E70F", "M71D", "G72-", "D73-", "F74-", "D75-"]}, "labels": {"aa": "RT-p51: I135V, M178I, L334Q; RT-p66: I135V, M178I, L334Q; gp120: K143Q, V153I, I332T, -370S; gp41: V194I; rev: P67S; vif: K179R; vpu: D60E, T61L, E62A, E63A, A65V, T66E, L67M, -68G, V69D, E70F, M71D, G72-, D73-, F74-, D75-"}}, "children": [{"name": "G_NODE_0000014", "node_attrs": {"div": 0.11226999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A369C", "A370G", "A386G", "G520A", "G542A", "A563G", "A978C", "T983C", "G1090A", "G1430A", "C1514T", "G1526A", "C1768A", "-1775G", "T1783-", "A1786-", "T1787-", "C1788-", "C1789-", "C1790-", "G2156A", "G2173A", "G2287A", "A2290G", "T2383C", "G2463A", "G2714C", "T3068C", "T3096A", "A3307C", "T3355A", "G3477A", "G3523A", "G3667A", "A3880G", "C4381T", "G4696A", "G4727A", "G4864A", "A5176G", "T5356G", "C5359T", "C5641T", "A5727C", "A5729G", "T5739A", "-5799T", "A6167-", "A6168-", "T6169-", "T6171-", "-6180T", "T6181A", "A6186G", "-6204G", "-6207A", "-6209T", "-6211C", "-6216T", "-6217G", "-6222A", "A6262G", "G6267A", "A6316G", "A6336G", "G6451A", "G6572A", "A6599C", "A6764G", "T6766G", "G6771A", "T6829C", "-6953A", "-6954A", "-6969G", "-6971A", "-7006C", "G7060A", "A7106G", "C7127T", "G7147T", "G7290A", "C7313A", "A7553C", "T7642C", "A7666G", "G7868A", "A7984C", "C8047T", "C8092A", "G8130A", "A8323T", "T8332A", "G8354A", "C8369-", "A8405G", "G8537A", "A8663G", "A8812C", "A8870T", "C9014T", "G9015A", "G9016A"], "RT-p51": ["V21I", "E207Q", "E404D"], "RT-p66": ["V21I", "S123D", "E207Q", "E404D", "R461K"], "gp120": ["-112T", "R138Q", "K150R", "N160T", "E240K", "I249L", "N304E", "S306N", "N328-", "K418V", "G479E"], "gp41": ["L4M", "I84L", "Q129L", "A189T", "F263L", "S277L"], "nef": ["N157T", "E176D"], "p17": ["K12R", "M120R"], "p24": ["I83L", "R116T", "S120N"], "p6": ["P30Q", "P37-", "L38-", "A39-"], "rev": ["H82T"], "vif": ["G37D", "R93K"], "vpr": ["I84S", "P85L", "Q86R"], "vpu": ["E40D", "K41R", "D44E"]}, "labels": {"aa": "RT-p51: V21I, E207Q, E404D; RT-p66: V21I, S123D, E207Q, E404D, R461K; gp120: -112T, R138Q, K150R, N160T, E240K, I249L, N304E, S306N, N328-, K418V, G479E; gp41: L4M, I84L, Q129L, A189T, F263L, S277L; nef: N157T, E176D; p17: K12R, M120R; p24: I83L, R116T, S120N; p6: P30Q, P37-, L38-, A39-; rev: H82T; vif: G37D, R93K; vpr: I84S, P85L, Q86R; vpu: E40D, K41R, D44E"}}, "children": [{"name": "AY586547", "node_attrs": {"div": 0.14431, "accession": "AY586547", "clade_membership": {"value": "G"}, "country": {"value": "CU"}, "date": {"value": 1999.0}, "Strain_name": {"value": "Cu74"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A101G", "A161G", "T217C", "-304C", "-305T", "A356G", "T396C", "A437C", "G463A", "G495T", "A499G", "A521C", "G524A", "G547C", "T655C", "-680G", "G686A", "T694G", "G709A", "C722T", "A759C", "T760C", "G761A", "A803C", "C827T", "A869G", "C897T", "T926C", "A989G", "G1064A", "A1077G", "C1088T", "G1192A", "T1229C", "T1238C", "A1248C", "A1329G", "C1460T", "A1461G", "A1464C", "A1474G", "A1644C", "G1661A", "A1670G", "G1685A", "A1701T", "C1712T", "G1734C", "G1781C", "G1794A", "C1795T", "A1927G", "T1987C", "G2017A", "A2023T", "T2077C", "A2203C", "A2210G", "A2215T", "A2233G", "C2356T", "G2459A", "T2497C", "T2499C", "C2533T", "T2581C", "C2584T", "A2615C", "T2631A", "G2632A", "G2683A", "G2707A", "A2767G", "T2779C", "A2788G", "T2800C", "C2839T", "A2884G", "C2930T", "A2945C", "C2960T", "C2985A", "C3068A", "C3095A", "A3097C", "A3109G", "A3136G", "A3200G", "C3201T", "G3221T", "G3250A", "A3385G", "A3391G", "C3399T", "A3400G", "T3436C", "G3457A", "A3490G", "A3491G", "A3508T", "G3756C", "G3808A", "G3869A", "C3931T", "A3988G", "C4042T", "G4096A", "A4111G", "T4198C", "A4525G", "A4611C", "T4702G", "T4703G", "G4737A", "A4774G", "G4779A", "G4855A", "G4923A", "C4925A", "G4949A", "A4950C", "A4968G", "T5003C", "T5006G", "G5086A", "T5147C", "C5168T", "A5233C", "C5237T", "A5240G", "A5335G", "G5418A", "G5448T", "G5461A", "T5462G", "G5463A", "C5478T", "G5482A", "T5483G", "G5493A", "A5494C", "C5556G", "A5557G", "A5601C", "C5611A", "A5613G", "C5614T", "G5647A", "T5653G", "A5668G", "A5685T", "T5688C", "G5700A", "C5727T", "T5731A", "G5791T", "C5834A", "T5844C", "G5882A", "T5911C", "A5918G", "C5989A", "T6046G", "C6097T", "C6115T", "A6164G", "C6165T", "C6183G", "A6185T", "T6187C", "-6195G", "-6196C", "-6201G", "C6202G", "-6205A", "-6208T", "-6210G", "A6212T", "T6213C", "A6214T", "-6215G", "-6218G", "-6220A", "A6225G", "A6268G", "G6274A", "G6280A", "C6289T", "T6322A", "A6323G", "A6324T", "G6326A", "A6327G", "T6337C", "G6339A", "T6340C", "A6368G", "T6436G", "T6446C", "A6464G", "A6490T", "T6562C", "A6617G", "A6692C", "A6695T", "C6697T", "A6773G", "T6792C", "G6793A", "A6794C", "C6810A", "A6820G", "T6825G", "T6828A", "-6830A", "-6831A", "-6832C", "C6835A", "T6838G", "G6841C", "C6843T", "C6844A", "C6850A", "A6854G", "C6856A", "T6857C", "C6858A", "T6863A", "C6888T", "A6889G", "A6900T", "T6901C", "G6935A", "G6936A", "-6955G", "-6957G", "-6966C", "A6968G", "-6970G", "-6972A", "A7005G", "A7007C", "-7009A", "A7010T", "C7014A", "A7036G", "A7045G", "A7155C", "A7161G", "T7162A", "-7164C", "A7169G", "C7170T", "A7224G", "T7309A", "G7316A", "A7396G", "A7426G", "T7537C", "A7604G", "T7625G", "A7626T", "A7641G", "C7642A", "C7658G", "C7688G", "A7689C", "C7703T", "A7782C", "T7843C", "A7880T", "C7898A", "T7929C", "G7997A", "A8023G", "A8093G", "G8107A", "G8143A", "T8167C", "C8213G", "A8228G", "G8264A", "G8276A", "A8329G", "A8332G", "T8333C", "T8337A", "A8338G", "-8369T", "A8386C", "A8425C", "C8480T", "T8498C", "G8517C", "A8528G", "C8568T", "T8582C", "C8655A", "T8711C", "T8741A", "T8746A", "C8747T", "A8784C", "A8807G", "A8816G", "C8840T", "G8882T", "G8886A", "A8922T", "G8945T", "C8951T"], "INT": ["V32I", "D279A"], "RT-p51": ["E36D", "T39A", "E40D", "E122K", "V135T", "I173K", "K174Q", "V179E", "A297E", "L325I", "Q334N", "T369V", "A376S", "P435L"], "RT-p66": ["E36D", "T39A", "E40D", "E122K", "V135T", "I173K", "K174Q", "V179E", "A297E", "L325I", "Q334N", "T369V", "A376S", "P435L", "I466V", "E471D", "S554T"], "gp120": ["V10I", "T22A", "N64K", "T104V", "T110S", "-111C", "-114S", "-115T", "-116G", "-117R", "-118N", "-119C", "-120S", "-121V", "-122E", "-123K", "Q138K", "N159S", "N161V", "T172A", "K212N", "I255V", "I281F", "K307G", "M313T", "-318K", "-319E", "-322K", "-324S", "-326G", "-327N", "K329-", "T330-", "N334E", "S335Q", "S337T", "T345M", "N349I", "G361K", "-366S", "-369N", "-371T", "N378-", "-382G", "-383N", "-384G", "T385P", "I386F", "T387K", "N432T", "T436R", "N437T", "T439V", "K457R"], "gp41": ["G5R", "T101A", "Y108V", "D113G", "Q119E", "L129A", "N160T", "I193L", "Q199K", "L209P", "D232N", "I264V", "L304V", "I309V", "V321I", "A325T", "L345Q"], "nef": ["E15A", "E28A", "E59Q", "Q105K", "F135Y", "M148L", "V182I", "I194L", "E201D"], "p1": ["I5L"], "p17": ["R43K", "A54S", "E55G", "G71A", "S125N"], "p2": ["I13V", "M14L"], "p24": ["M10P", "Q86P", "T116G", "R154K", "N183G", "T200A"], "p6": ["T8S", "E19Q", "E34D", "Y36I"], "p7": ["K3R"], "rev": ["R50K", "I59V", "T82S", "E87K", "G99R", "S107P"], "tat": ["K24N", "V29R", "V36S", "N40H"], "vif": ["I9L", "F39W", "V51I", "K63R", "V65I", "R90K", "D113K", "K122Q", "I128V", "N140K", "R167K"], "vpr": ["Y15H", "H45Y", "I46V", "Q77R"], "vpu": ["Q2K", "P3S", "A7S", "V14I", "F16G", "I21V", "L42I", "A62S", "-72H", "P76-"]}, "labels": {"aa": "INT: V32I, D279A; RT-p51: E36D, T39A, E40D, E122K, V135T, I173K, K174Q, V179E, A297E, L325I, Q334N, T369V, A376S, P435L; RT-p66: E36D, T39A, E40D, E122K, V135T, I173K, K174Q, V179E, A297E, L325I, Q334N, T369V, A376S, P435L, I466V, E471D, S554T; gp120: V10I, T22A, N64K, T104V, T110S, -111C, -114S, -115T, -116G, -117R, -118N, -119C, -120S, -121V, -122E, -123K, Q138K, N159S, N161V, T172A, K212N, I255V, I281F, K307G, M313T, -318K, -319E, -322K, -324S, -326G, -327N, K329-, T330-, N334E, S335Q, S337T, T345M, N349I, G361K, -366S, -369N, -371T, N378-, -382G, -383N, -384G, T385P, I386F, T387K, N432T, T436R, N437T, T439V, K457R; gp41: G5R, T101A, Y108V, D113G, Q119E, L129A, N160T, I193L, Q199K, L209P, D232N, I264V, L304V, I309V, V321I, A325T, L345Q; nef: E15A, E28A, E59Q, Q105K, F135Y, M148L, V182I, I194L, E201D; p1: I5L; p17: R43K, A54S, E55G, G71A, S125N; p2: I13V, M14L; p24: M10P, Q86P, T116G, R154K, N183G, T200A; p6: T8S, E19Q, E34D, Y36I; p7: K3R; rev: R50K, I59V, T82S, E87K, G99R, S107P; tat: K24N, V29R, V36S, N40H; vif: I9L, F39W, V51I, K63R, V65I, R90K, D113K, K122Q, I128V, N140K, R167K; vpr: Y15H, H45Y, I46V, Q77R; vpu: Q2K, P3S, A7S, V14I, F16G, I21V, L42I, A62S, -72H, P76-"}}}, {"name": "G_NODE_0000015", "node_attrs": {"div": 0.11778999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C540A", "G998A", "C1013T", "G1078C", "G1495A", "G1760A", "A2498G", "A2613C", "A2809G", "A3295C", "A3302G", "T3566C", "A3760G", "T4701G", "A4717T", "A4863G", "A4988C", "A5005-", "G5128A", "A5282T", "A5547C", "G5558A", "A5717G", "C5734A", "A5962G", "A6022G", "-6210T", "A6266C", "A6461G", "G6647A", "C6758T", "G6774A", "A6796G", "G6802A", "A6887C", "A6905G", "-6955T", "G6963A", "-6970T", "-6972G", "-6974A", "-6975G", "-6976T", "-6977A", "-6978A", "-6979T", "-6980A", "-6981G", "-6982T", "-6983A", "-6984A", "-6986A", "-6987A", "-6988T", "-7009C", "A7113C", "T7117C", "-7164A", "G7322-", "G8030C", "A8093C", "A8111G", "G8267A", "T8371-", "A8777G", "A8799G", "A8816T", "T8903C"], "RT-p51": ["T403A"], "RT-p66": ["T403A", "S491P"], "gp120": ["I56M", "S162D", "K203E", "E204K", "E265K", "H302Y", "T345P", "R351G", "-379N", "N420T"], "gp41": ["A243P", "I264L", "T270A", "V322I"], "nef": ["I153V", "K158N"], "p17": ["Q69K", "A107E", "Q108-"], "p7": ["R10K"], "rev": ["E11A", "R14T", "A15T", "S61T", "D88G"], "tat": ["Q60H", "G61N"], "vif": ["F39V", "Y44F", "K93E", "E134D", "R181K"], "vpr": ["I60L"], "vpu": ["F16C", "K37R", "L43I"]}, "labels": {"aa": "RT-p51: T403A; RT-p66: T403A, S491P; gp120: I56M, S162D, K203E, E204K, E265K, H302Y, T345P, R351G, -379N, N420T; gp41: A243P, I264L, T270A, V322I; nef: I153V, K158N; p17: Q69K, A107E, Q108-; p7: R10K; rev: E11A, R14T, A15T, S61T, D88G; tat: Q60H, G61N; vif: F39V, Y44F, K93E, E134D, R181K; vpr: I60L; vpu: F16C, K37R, L43I"}}, "children": [{"name": "AY586548", "node_attrs": {"div": 0.14043999999999998, "accession": "AY586548", "clade_membership": {"value": "G"}, "country": {"value": "CU"}, "date": {"value": 1999.0}, "Strain_name": {"value": "Cu85"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C96G", "-304T", "-305T", "G354A", "A359G", "A417C", "A426C", "A499G", "A516C", "G518A", "A521C", "A530G", "A542C", "C558A", "A607G", "G614T", "G654A", "C669-", "A670-", "G671-", "C672-", "A673-", "A674-", "A675-", "A676-", "A677-", "A678-", "C679-", "G690A", "A693G", "G699A", "G703A", "C707A", "A716G", "T852A", "G956T", "C988A", "G1184A", "A1205G", "T1244C", "A1263T", "A1271T", "A1359T", "C1456G", "G1458A", "A1588G", "G1589A", "G1594A", "T1646C", "G1691A", "G1781C", "C1795T", "G1968A", "A1990G", "A2007G", "G2459A", "A2592G", "C2613T", "A2627C", "A2677G", "A2678C", "A2699G", "A2716G", "G2722A", "C2728A", "A2925G", "C3056T", "A3103G", "G3206T", "G3221T", "A3268G", "T3294C", "C3307T", "A3355G", "C3394T", "C3399T", "A3484G", "A3490G", "T3493C", "A3503G", "A3508C", "A3676C", "T3695A", "A3703C", "A3805G", "G3834A", "T4005G", "C4042T", "G4055C", "G4060C", "A4082C", "A4083C", "A4175G", "G4194A", "C4576T", "G4622A", "A4650C", "G4677A", "T4706C", "T4799G", "A4865G", "G4904A", "G4949A", "T5003-", "A5004-", "T5006C", "G5030A", "C5050G", "T5062G", "A5065G", "A5151C", "T5205A", "A5335G", "T5412G", "T5415C", "T5462C", "G5482C", "C5511T", "A5534G", "G5535A", "C5542A", "G5565A", "A5612T", "C5614T", "G5620C", "A5621C", "T5626G", "T5688C", "G5700A", "A5712G", "G5791T", "G5915T", "G5964A", "C5965A", "T6025C", "T6180C", "A6185G", "G6186T", "T6187A", "-6195G", "-6196T", "-6201C", "C6202T", "A6203G", "-6205T", "A6206G", "A6207G", "-6208C", "T6209A", "-6215C", "-6218C", "A6219T", "-6220G", "A6222T", "A6225G", "A6229G", "A6268G", "G6274A", "G6280A", "C6289T", "A6332G", "G6336C", "T6337A", "A6338G", "A6368T", "C6403T", "T6446C", "G6628A", "A6684G", "A6689G", "C6697-", "-6703A", "A6765T", "A6786C", "A6822G", "T6828-", "C6829-", "A6833-", "C6849T", "C6850T", "G6948A", "A6953T", "T6956C", "-6957T", "T6958G", "-6966G", "-6985T", "-6989A", "-6990A", "-6991T", "-6992A", "-6993A", "-6994T", "G7004A", "A7005T", "G7027A", "A7036G", "C7089A", "A7090C", "A7108C", "A7133G", "A7151C", "A7152C", "A7158G", "A7160G", "A7161G", "G7256A", "G7315-", "G7316-", "G7317-", "A7318-", "G7319-", "C7320-", "T7321-", "T7323-", "C7324-", "T7325-", "T7326-", "C7327-", "C7328-", "T7329-", "A7527T", "A7676G", "A7689T", "A7690G", "A7693C", "G7717A", "T7796A", "T8007C", "C8037T", "T8060A", "T8167G", "G8171T", "T8172G", "A8184G", "A8208G", "G8222A", "C8293T", "T8366G", "-8369A", "-8371G", "G8377A", "A8403G", "G8404A", "A8425T", "T8440C", "G8502A", "T8582C", "A8584T", "G8588A", "C8590G", "C8675T", "T8847A", "G8848A", "G8875A", "A8888G", "C8934A", "T8935A"], "INT": ["R20K", "V77G", "G94R", "Q95H", "K103P", "N134D", "G140E", "G283S"], "RT-p51": ["E122K", "K166R", "I178L", "I195L", "I202V", "S211R", "K277R", "P321S", "V371L", "A376S", "V400A", "P435L"], "RT-p66": ["E122K", "K166R", "I178L", "I195L", "I202V", "S211R", "K277R", "P321S", "V371L", "A376S", "V400A", "P435L", "T470A", "E471D", "K527N", "S534T"], "gp120": ["D21Y", "S37K", "V109A", "-111V", "-114S", "N159G", "N161G", "T172S", "K277R", "I279V", "E304V", "N311T", "Q315K", "K316G", "V317I", "-318Y", "K320-", "L321-", "E323-", "F325-", "-328N", "T332I", "-366Y", "-367L", "-368N", "-369N", "-371S", "-372S", "-374N", "-375S", "-376N", "-380I", "A412D", "T427A", "N433P", "N435S", "T436G", "V468I"], "gp41": ["M4I", "A6-", "V7-", "F8-", "L9-", "G10-", "Y75F", "N125D", "Q130H", "S165T", "I235T", "A245V", "C253S", "V290W", "Q294R", "N302S", "V307I"], "nef": ["S8R", "S9R", "I10R", "G12E", "R21E", "E28V", "V33A", "D54N", "Y81F", "A83G", "C169N", "R178K", "L198K"], "p17": ["V7I", "K28Q", "M31L", "E55G", "M61L", "K69N", "L75I", "K91R", "E93D", "E102-", "E103-", "V104-", "E105-", "K106E", "-108V", "K109E", "S111I", "Q113K", "T115S", "A119T", "R120V", "E122K", "G123E", "N124K"], "p2": ["A11G", "A12T"], "p24": ["S41T", "E75D", "T178S", "E180D", "N183G", "T210S"], "p6": ["E34D", "Y36V"], "p7": ["K41R", "G43E"], "pro": ["R57K", "I64M", "K70R"], "rev": ["S7D", "D9E", "R17K", "V71E", "S107A", "G108V"], "tat": ["N12K", "V29A", "V36L", "K53R"], "vif": ["N22H", "V31I", "N140-", "T155R", "I159R", "K160R", "M189L"], "vpr": ["N16T", "F34Y", "Q77R"], "vpu": ["Q2L", "P3S", "E5P", "A62S"]}, "labels": {"aa": "INT: R20K, V77G, G94R, Q95H, K103P, N134D, G140E, G283S; RT-p51: E122K, K166R, I178L, I195L, I202V, S211R, K277R, P321S, V371L, A376S, V400A, P435L; RT-p66: E122K, K166R, I178L, I195L, I202V, S211R, K277R, P321S, V371L, A376S, V400A, P435L, T470A, E471D, K527N, S534T; gp120: D21Y, S37K, V109A, -111V, -114S, N159G, N161G, T172S, K277R, I279V, E304V, N311T, Q315K, K316G, V317I, -318Y, K320-, L321-, E323-, F325-, -328N, T332I, -366Y, -367L, -368N, -369N, -371S, -372S, -374N, -375S, -376N, -380I, A412D, T427A, N433P, N435S, T436G, V468I; gp41: M4I, A6-, V7-, F8-, L9-, G10-, Y75F, N125D, Q130H, S165T, I235T, A245V, C253S, V290W, Q294R, N302S, V307I; nef: S8R, S9R, I10R, G12E, R21E, E28V, V33A, D54N, Y81F, A83G, C169N, R178K, L198K; p17: V7I, K28Q, M31L, E55G, M61L, K69N, L75I, K91R, E93D, E102-, E103-, V104-, E105-, K106E, -108V, K109E, S111I, Q113K, T115S, A119T, R120V, E122K, G123E, N124K; p2: A11G, A12T; p24: S41T, E75D, T178S, E180D, N183G, T210S; p6: E34D, Y36V; p7: K41R, G43E; pro: R57K, I64M, K70R; rev: S7D, D9E, R17K, V71E, S107A, G108V; tat: N12K, V29A, V36L, K53R; vif: N22H, V31I, N140-, T155R, I159R, K160R, M189L; vpr: N16T, F34Y, Q77R; vpu: Q2L, P3S, E5P, A62S"}}}, {"name": "AY586549", "node_attrs": {"div": 0.14010999999999998, "accession": "AY586549", "clade_membership": {"value": "G"}, "country": {"value": "CU"}, "date": {"value": 1999.0}, "Strain_name": {"value": "Cu87"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C48T", "A265G", "A302T", "A303-", "C362T", "A470G", "C507A", "A509G", "A513C", "A519T", "A520C", "G524A", "G534T", "C537A", "A571T", "A619G", "G639-", "A640-", "G641-", "G642-", "A643-", "A644-", "G645-", "T646-", "G647-", "A650G", "A651G", "G653A", "A656G", "C657G", "A663G", "-680A", "G683A", "T694A", "G740A", "C767T", "T1037C", "A1074G", "C1088T", "A1193G", "A1196G", "T1211C", "G1278A", "G1279A", "C1280T", "C1403T", "A1404G", "T1409C", "C1444T", "G1449A", "G1458T", "A1476G", "C1535T", "G1562A", "C1692A", "G1766T", "-1782C", "-1783T", "-1784A", "-1785T", "-1786A", "-1787C", "-1788C", "-1789C", "-1790C", "G1794A", "T2257C", "A2579T", "T2708C", "C2720T", "C2728T", "A2767G", "C2953T", "A3028G", "A3067C", "G3093A", "A3192G", "A3264G", "C3275A", "A3292C", "C3517T", "A3532G", "T3644A", "G3808T", "G3825C", "C3843T", "T4039C", "A4178G", "T4396C", "C4471T", "A4555G", "A4766G", "C4826T", "G4923A", "-5005C", "A5051C", "A5159G", "C5294T", "G5376A", "G5385A", "G5418A", "C5478T", "C5496A", "A5499G", "A5548G", "G5561A", "T5602A", "A5631C", "A5685G", "A5694G", "G5781A", "T5844G", "G5948T", "C6024T", "G6029A", "G6133A", "-6167G", "-6168A", "-6169T", "-6170G", "-6171T", "-6172A", "-6173A", "-6174C", "-6175C", "A6181G", "T6184C", "C6190T", "C6193T", "A6194-", "A6197-", "C6198G", "G6200A", "-6201A", "A6203C", "G6204A", "-6205G", "-6208A", "C6211G", "A6212G", "-6215A", "G6217C", "-6218A", "-6220C", "A6223T", "C6241T", "C6281A", "A6282C", "A6285T", "T6328A", "A6329G", "A6330T", "G6339A", "T6340G", "C6403A", "A6489C", "A6574G", "A6605G", "G6638A", "A6654T", "A6695T", "A6773G", "A6779C", "T6787G", "A6800C", "A6807G", "C6810A", "A6819T", "T6825G", "-6830C", "-6831C", "-6832A", "A6836-", "A6837-", "T6838-", "G6841A", "C6849A", "T6857G", "A6884G", "A6934T", "G6936A", "A6937C", "T6956A", "-6957A", "A6960T", "-6966A", "-6985C", "C7006T", "C7008A", "A7015C", "A7026G", "A7032T", "G7042A", "T7107G", "T7109A", "G7122C", "G7137C", "T7147A", "A7148G", "A7155G", "G7269A", "-7322T", "A7342C", "G7343A", "A7519G", "G7628A", "A7633C", "G7701C", "A7705G", "A7880T", "C7912A", "G7995A", "G8050A", "C8065T", "G8143A", "T8203C", "T8265C", "T8288G", "A8297G", "G8349A", "T8366C", "A8367-", "G8368-", "A8370-", "A8372-", "G8373-", "T8374-", "T8375-", "G8376-", "G8377-", "A8378-", "A8386C", "G8387A", "A8391T", "G8398C", "A8407G", "G8418A", "G8427A", "T8505A", "A8527G", "A8531G", "G8554A", "A8564G", "G8627A", "G8628C", "G8629T", "T8701A", "A8784G", "C8840T", "A8859G", "A8869C", "G8886A", "G8942T", "C8957T", "C9028T", "T9036-", "G9037-", "G9038-", "C9039-", "T9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "A9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "T9060-", "A9061-", "A9062-", "G9063-", "C9064-", "A9065-", "G9066-", "C9067-", "C9068-", "G9069-", "C9070-", "T9071-", "T9072-", "C9073-", "T9074-", "C9075-", "G9076-", "C9077-", "C9078-", "T9079-", "G9080-", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "T9095-", "G9096-", "C9097-", "T9098-", "A9099-", "G9100-", "A9101-", "C9102-", "C9103-", "A9104-", "G9105-", "A9106-", "T9107-", "T9108-", "T9109-", "G9110-", "A9111-", "G9112-", "C9113-", "C9114-", "T9115-", "G9116-", "G9117-", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-"], "INT": ["E11D", "S17T", "A23V", "I135V"], "RT-p51": ["S162C", "I173T", "E324D", "G333E", "K366R", "K390R", "E399D"], "RT-p66": ["S162C", "I173T", "E324D", "G333E", "K366R", "K390R", "E399D", "L517I"], "gp120": ["A32S", "P57L", "E59K", "-105D", "-106V", "-107T", "-111S", "-120E", "-122N", "-123N", "G124E", "Q143T", "E144V", "N161T", "D183E", "K212T", "N251D", "E262K", "N267I", "I281F", "K307E", "K309Q", "N311K", "L314M", "K316Q", "-318R", "-319E", "-322I", "-324S", "-326P", "-327N", "T332N", "S335A", "T344A", "G361D", "S370-", "-377S", "-383N", "T385N", "K391R", "K393I", "V418G", "S419T", "G423A", "R428T", "N432D", "N434G", "R472K"], "gp41": ["V7F", "A14T", "D109N", "E110D", "S133T", "I193L", "R231K", "L277R", "V321A", "F329V", "I332V"], "nef": ["G3S", "S9-", "I10-", "V11-", "G12-", "E15A", "R17W", "R19T", "Q22R", "A26T", "G29R", "C55S", "E62G", "G96L", "F120Y", "M148V", "M173V", "D176A", "V182I"], "p17": ["Q58K", "I60L", "N62S", "A67S", "L68I", "Y79F", "K95R", "K109-", "K110-", "R120K"], "p2": ["A7V", "G9S", "A12S"], "p24": ["Q86P", "I115V", "S225G"], "p6": ["P5T", "E29D", "-37P", "-38L", "-39T"], "p7": ["S4G"], "rev": ["V16I", "A68T", "L73F", "G99R"], "tat": ["N40K", "T58A", "S62N"], "vif": ["D113N", "N140T"], "vpr": ["T19A", "D91N", "G94S"], "vpu": ["A7S"]}, "labels": {"aa": "INT: E11D, S17T, A23V, I135V; RT-p51: S162C, I173T, E324D, G333E, K366R, K390R, E399D; RT-p66: S162C, I173T, E324D, G333E, K366R, K390R, E399D, L517I; gp120: A32S, P57L, E59K, -105D, -106V, -107T, -111S, -120E, -122N, -123N, G124E, Q143T, E144V, N161T, D183E, K212T, N251D, E262K, N267I, I281F, K307E, K309Q, N311K, L314M, K316Q, -318R, -319E, -322I, -324S, -326P, -327N, T332N, S335A, T344A, G361D, S370-, -377S, -383N, T385N, K391R, K393I, V418G, S419T, G423A, R428T, N432D, N434G, R472K; gp41: V7F, A14T, D109N, E110D, S133T, I193L, R231K, L277R, V321A, F329V, I332V; nef: G3S, S9-, I10-, V11-, G12-, E15A, R17W, R19T, Q22R, A26T, G29R, C55S, E62G, G96L, F120Y, M148V, M173V, D176A, V182I; p17: Q58K, I60L, N62S, A67S, L68I, Y79F, K95R, K109-, K110-, R120K; p2: A7V, G9S, A12S; p24: Q86P, I115V, S225G; p6: P5T, E29D, -37P, -38L, -39T; p7: S4G; rev: V16I, A68T, L73F, G99R; tat: N40K, T58A, S62N; vif: D113N, N140T; vpr: T19A, D91N, G94S; vpu: A7S"}}}]}]}, {"name": "G_NODE_0000016", "node_attrs": {"div": 0.10829999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G256A", "A519G", "A607G", "C672A", "C767T", "G1256A", "C1460A", "A1501T", "-1784A", "-1785T", "T2449G", "G2725A", "A2734G", "A3025G", "T3118C", "T3334C", "C3398G", "C3610T", "C3773T", "A4087G", "G4109A", "A4231G", "A5061G", "T5062C", "C5306T", "A5444C", "G5448A", "T5602A", "C5921A", "G6029A", "-6172A", "-6174C", "-6209A", "-6211T", "-6218G", "G6303A", "A6323G", "A6573G", "A6669G", "G6767A", "A6779G", "G6788A", "G6790T", "A6807C", "A6808T", "T6838C", "T6863G", "-7009T", "C7170T", "A7519G", "C7603T", "A7604G", "C7684T", "G8171T", "A8367T", "A8425-", "C8590G", "C8666T", "G8945C"], "INT": ["V112I"], "RT-p51": ["P435A"], "RT-p66": ["P435A"], "gp120": ["P23T", "-115S", "N158D", "E240G", "V305I", "K309E", "E312N", "-373S", "-376N", "N432E", "T439I"], "gp41": ["T101A", "V290L"], "p17": ["N62G", "K91R", "Q113K"], "p2": ["A10-"], "rev": ["G108V"], "tat": ["N23T", "G61S"], "vif": ["I159A"]}, "labels": {"aa": "INT: V112I; RT-p51: P435A; RT-p66: P435A; gp120: P23T, -115S, N158D, E240G, V305I, K309E, E312N, -373S, -376N, N432E, T439I; gp41: T101A, V290L; p17: N62G, K91R, Q113K; p2: A10-; rev: G108V; tat: N23T, G61S; vif: I159A"}}, "children": [{"name": "FJ389367", "node_attrs": {"div": 0.14753, "accession": "FJ389367", "clade_membership": {"value": "G"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "A1786"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A49T", "G50A", "G51A", "C93T", "C96T", "T227A", "A263T", "A265G", "-304A", "-305T", "C362T", "G428A", "G495A", "A516T", "G520A", "G534A", "C539T", "C540A", "A541G", "C558A", "A576G", "C587T", "G641A", "G654A", "A677G", "-680A", "A697G", "G743A", "G771C", "A774C", "A818G", "C824A", "G829A", "T858C", "G914A", "G941A", "C950T", "T979C", "A1022G", "C1060A", "A1151G", "G1278A", "G1279A", "A1308C", "G1313A", "A1349G", "A1404G", "A1418G", "G1430A", "G1449A", "G1450A", "G1452T", "A1476G", "A1503-", "T1504-", "T1505-", "C1535T", "G1589A", "G1619A", "T1646C", "C1721T", "-1746C", "-1747C", "-1748C", "C1749T", "T1752C", "C1754G", "C1755A", "C1756A", "A1774G", "A1776-", "A1777-", "-1782C", "C1790T", "C1796T", "G1819A", "A1841G", "C1914A", "A1951T", "C1960T", "G1968A", "A1990G", "A2023G", "G2056A", "G2224A", "T2302C", "A2305G", "A2317G", "G2456T", "G2463A", "T2488C", "A2498G", "A2613T", "T2631A", "G2632A", "G2727A", "C2728A", "G2837A", "C2839T", "G2914A", "T3002C", "A3067C", "C3095T", "A3124G", "G3173A", "C3175T", "T3271C", "G3344A", "C3352T", "G3378A", "C3405T", "A3448G", "T3469C", "A3507G", "A3664G", "A3684G", "G3756A", "A3772G", "A3973T", "A4071T", "T4075C", "C4079T", "A4093C", "A4111G", "T4117C", "A4175G", "A4222G", "T4396C", "A4433G", "T4455A", "C4761A", "C4776A", "T4827C", "G4829A", "C4833A", "A4877G", "G4913A", "G4923A", "T5018C", "A5051C", "C5052T", "A5055C", "A5059G", "A5063G", "G5131A", "T5147C", "A5167G", "G5179A", "A5185G", "A5186G", "A5187C", "C5221T", "A5296G", "A5312G", "A5355G", "C5359G", "G5362A", "G5363A", "T5462C", "A5555G", "A5570G", "C5585A", "A5586G", "A5587G", "A5616C", "G5654T", "C5678T", "T5690G", "A5693T", "A5703C", "G5708A", "A5709G", "A5716G", "A5752C", "T5787C", "C5789T", "A5790G", "-5799T", "A5805G", "G5812-", "-5824A", "T5851C", "A5868C", "G5893A", "T5923C", "G5948T", "A5963G", "C6023T", "A6030T", "T6109C", "A6131C", "T6163-", "A6164-", "C6165-", "A6167G", "A6168T", "T6169G", "-6170C", "T6171C", "-6173G", "-6175A", "-6180G", "T6181C", "T6187C", "C6189T", "C6190A", "A6192C", "C6193T", "A6194G", "-6195G", "-6196C", "A6197T", "-6201G", "-6204C", "-6205T", "A6206G", "-6207T", "-6208G", "-6210A", "-6215A", "-6216C", "-6217C", "A6221-", "A6223-", "G6224-", "A6225-", "G6227C", "A6229G", "A6232G", "T6244G", "A6268G", "A6273G", "C6298T", "T6322A", "G6326A", "A6327G", "G6333A", "C6347A", "A6349G", "G6379A", "G6392A", "T6397C", "T6460C", "A6461G", "A6464G", "C6482A", "A6565G", "A6577C", "G6593A", "A6605G", "G6638A", "A6641T", "C6667T", "A6668G", "C6673T", "A6689G", "C6717T", "G6725A", "T6733A", "C6758T", "T6760C", "A6770G", "G6771C", "T6772A", "G6774A", "C6777A", "A6781C", "A6785G", "A6794C", "C6797A", "A6798G", "A6800G", "G6802A", "A6805G", "A6806G", "G6809A", "C6810T", "A6819G", "A6820G", "G6821A", "T6825G", 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"C8149G", "T8159G", "T8171C", "A8184G", "A8221G", "C8242T", "T8321G", "T8332A", "T8337C", "A8364G", "T8366A", "A8372G", "T8374C", "T8375C", "A8402G", "C8412A", "C8422A", "A8426-", "G8427-", "T8440C", "A8468G", "T8471C", "C8477T", "G8487C", "G8490T", "A8494C", "C8499G", "A8503C", "G8516A", "A8528G", "T8534C", "A8584T", "T8591C", "C8655A", "A8718G", "T8745C", "A8784C", "T8789A", "G8793A", "A8870G", "G8885A", "A8922T", "A8924G", "G8991A", "G9008A", "C9018A", "C9028T"], "INT": ["Y99F", "I112M", "N134D", "I220V", "F227Y"], "RT-p51": ["D121Y", "V179E", "S211K", "D248N", "E324D", "Q334L", "A360T", "V417I", "R428Q", "A437V"], "RT-p66": ["D121Y", "S123D", "V179E", "S211K", "D248N", "E324D", "Q334L", "A360T", "V417I", "R428Q", "A437V", "E471G", "K530R", "S554N"], "gp120": ["N5T", "A32S", "S37G", "P57S", "E59I", "K93Q", "T104V", "-105P", "-106A", "V109G", "-111N", "-112I", "N113T", "-114G", "-116G", "-117T", "-118V", "-119N", "-120I", "-121T", "-122E", "-123Q", "G124M", "E125-", "I126-", "K140R", "D157E", "N160S", "L165M", "V180M", "K203E", "P210T", "E241D", "E247K", "N251D", "E262K", "T263S", "N272G", "I279V", "A288V", "A291T", "D294E", "H302Y", "S306A", "T308K", "E309D", "N311D", "Q315R", "K316E", "-318A", "-319I", "-322R", "E323K", "-324S", "F325L", "-326N", "-327S", "S337A", "T344A", "S365I", "-371Y", "-372N", "-374T", "-375E", "-377S", "N378T", "-379Y", "-380N", "-381E", "-382G", "-383N", "-384E", "I386Y", "A412K", "K418R", "T436S", "N437S", "I439V", "V460I", "R472K"], "gp41": ["Q52H", "V69L", "D109E", "E110A", "D113E", "Q119E", "K154Q", "N166R", "V178I", "S192A", "S205L", "P216L", "D232N", "I235V", "S239R", "F241S", "L242F", "A245V", "C253S", "F255C", "R259H", "I264V", "A267V", "S277R", "G278V", "W286G", "Q294R", "F340V", "L345P"], "nef": ["S8G", "S9C", "I10M", "V11A", "I20M", "P24T", "A27E", "E28G", "G29-", "V33A", "A49P", "A50S", "N51T", "P53A", "D54A", "Y81F", "A83G", "Q105K", "N126D", "F135L", "M148L", "D149E", "A151T", "I194L", "E201D"], "p17": ["M31I", "A54T", "M61L", "G62E", "A67T", "Q69R", "L75I", "T81A", "A107I", "D121G"], "p2": ["G9N", "-10S"], "p24": ["A14P", "I15L", "S33N", "I83T", "Q86P", "T110N", "N193H", "S225G"], "p6": ["-26K", "E32G", "K33-", "S47N"], "p7": ["S4G", "N12I", "I13-"], "pro": ["I15V", "P39Q", "R57K", "I64M"], "rev": ["R14A", "I19V", "Q24R", "R50K", "H53R", "S61R", "S67L", "A68E", "V71E", "H82R", "Q101E", "V104G", "V108A"], "tat": ["V29A", "Q60R", "H65R", "P70Q", "K71E", "P81S"], "vif": ["L59I", "L64I", "H83N", "D113N", "P156S", "T157P", "K158R", "G182D"], "vpr": ["Y15H", "N28A", "I70V", "I84V", "P85R"], "vpu": ["A7S", "T24I", "I28R", "Q29L", "E32D", "R34K", "K37E", "D69N"]}, "labels": {"aa": "INT: Y99F, I112M, N134D, I220V, F227Y; RT-p51: D121Y, V179E, S211K, D248N, E324D, Q334L, A360T, V417I, R428Q, A437V; RT-p66: D121Y, S123D, V179E, S211K, D248N, E324D, Q334L, A360T, V417I, R428Q, A437V, E471G, K530R, S554N; gp120: N5T, A32S, S37G, P57S, E59I, K93Q, T104V, -105P, -106A, V109G, -111N, -112I, N113T, -114G, -116G, -117T, -118V, -119N, -120I, -121T, -122E, -123Q, G124M, E125-, I126-, K140R, D157E, N160S, L165M, V180M, K203E, P210T, E241D, E247K, N251D, E262K, T263S, N272G, I279V, A288V, A291T, D294E, H302Y, S306A, T308K, E309D, N311D, Q315R, K316E, -318A, -319I, -322R, E323K, -324S, F325L, -326N, -327S, S337A, T344A, S365I, -371Y, -372N, -374T, -375E, -377S, N378T, -379Y, -380N, -381E, -382G, -383N, -384E, I386Y, A412K, K418R, T436S, N437S, I439V, V460I, R472K; gp41: Q52H, V69L, D109E, E110A, D113E, Q119E, K154Q, N166R, V178I, S192A, S205L, P216L, D232N, I235V, S239R, F241S, L242F, A245V, C253S, F255C, R259H, I264V, A267V, S277R, G278V, W286G, Q294R, F340V, L345P; nef: S8G, S9C, I10M, V11A, I20M, P24T, A27E, E28G, G29-, V33A, A49P, A50S, N51T, P53A, D54A, Y81F, A83G, Q105K, N126D, F135L, M148L, D149E, A151T, I194L, E201D; p17: M31I, A54T, M61L, G62E, A67T, Q69R, L75I, T81A, A107I, D121G; p2: G9N, -10S; p24: A14P, I15L, S33N, I83T, Q86P, T110N, N193H, S225G; p6: -26K, E32G, K33-, S47N; p7: S4G, N12I, I13-; pro: I15V, P39Q, R57K, I64M; rev: R14A, I19V, Q24R, R50K, H53R, S61R, S67L, A68E, V71E, H82R, Q101E, V104G, V108A; tat: V29A, Q60R, H65R, P70Q, K71E, P81S; vif: L59I, L64I, H83N, D113N, P156S, T157P, K158R, G182D; vpr: Y15H, N28A, I70V, I84V, P85R; vpu: A7S, T24I, I28R, Q29L, E32D, R34K, K37E, D69N"}}}, {"name": "G_NODE_0000017", "node_attrs": {"div": 0.12074999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["T217C", "T258G", "A302T", "C435T", "G481A", "A562G", "A571T", "T655C", "A659G", "A678-", "C679-", "T698C", "T782C", "A878G", "G908A", "C1406T", "T1409C", "T1451G", "G1455-", "C1456-", "A1457-", "G1458A", "C1490T", "G1495A", "T1502G", "C1541T", "G1562A", "T1682C", "C2149T", "A2223G", "G2387T", "A2419G", "T2440C", "G2462A", "G2578A", "G2714A", "T2899C", "G2950A", "G2980A", "A3019G", "C3055A", "T3112C", "G3250A", "G3340A", "G3523A", "A3769G", "C3787T", "G3907A", "C4123T", "C4761T", "C4826T", "G4904A", "C4943A", "A4952G", "C4955A", "A4976T", "A5005C", "A5140G", "C5237T", "A5302G", "G5418A", "G5461A", "T5653G", "A5685C", "G5699A", "T5731A", "A5908G", "-6170G", "-6173A", "-6175T", "G6179A", "-6180A", "T6184C", "C6189G", "-6196T", "G6200A", "-6207G", "-6208C", "-6210C", "-6220C", "A6230C", "A6329G", "A6330G", "A6376G", "T6397A", "T6446C", "A6547G", "G6553A", "G6647A", "A6649C", "A6654C", "T6655A", "A6695T", "G6802T", "C6843-", "T6857C", "C6875T", "G6936A", "-6957T", "-6970T", "C7018T", "A7026G", "A7108G", "A7160G", "T7162G", "C7171T", "T7325C", "G7343A", "A7573G", "A7646C", "A7655G", "A7677G", "G7701A", "A7706C", "C7912A", "A7962G", "T8122C", "T8203C", "C8213T", "G8254A", "C8277T", "T8279G", "A8303G", "G8304T", "G8308A", "C8331T", "A8348G", "G8368C", "A8378G", "A8407G", "-8425T", "A8799G", "C8867T", "A8869C", "G8875A", "T9040C", "G9128A"], "INT": ["E11D"], "RT-p51": ["K43R", "A98S", "D123S", "E207K", "D320E"], "RT-p66": ["K43R", "A98S", "E207K", "D320E"], "gp120": ["I126L", "E265N", "N267T", "R280S", "I281F", "K307R", "L314I", "K316N", "-318T", "-319K", "-374N", "K391R"], "gp41": ["F8L", "A14T", "M115L", "I118V", "S133N", "I135L", "E220G", "R233K", "L304F", "A325V", "C326G", "R334V", "F340L"], "nef": ["Q22R", "E28V", "I153V", "E176A", "R178K"], "p17": ["G49D", "K76R", "Y79F", "T115-"], "p2": ["A12T"], "p24": ["N183G"], "p7": ["R10K", "N12M"], "rev": ["S92P"], "tat": ["K85E"], "vif": ["R130S", "N140T", "E185G"], "vpr": ["H45Y", "Q86R"], "vpu": ["F16G", "R31K", "L42I"]}, "labels": {"aa": "INT: E11D; RT-p51: K43R, A98S, D123S, E207K, D320E; RT-p66: K43R, A98S, E207K, D320E; gp120: I126L, E265N, N267T, R280S, I281F, K307R, L314I, K316N, -318T, -319K, -374N, K391R; gp41: F8L, A14T, M115L, I118V, S133N, I135L, E220G, R233K, L304F, A325V, C326G, R334V, F340L; nef: Q22R, E28V, I153V, E176A, R178K; p17: G49D, K76R, Y79F, T115-; p2: A12T; p24: N183G; p7: R10K, N12M; rev: S92P; tat: K85E; vif: R130S, N140T, E185G; vpr: H45Y, Q86R; vpu: F16G, R31K, L42I"}}, "children": [{"name": "G_NODE_0000018", "node_attrs": {"div": 0.12429999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A265G", "T396C", "G524A", "G703A", "G709A", "G1192A", "T1484C", "-1782C", "A2929G", "T3096A", "A3283G", "C3545T", "T3644A", "G4677A", "G4870A", "A4968T", "A4990T", "G5137A", "T5462A", "C5478T", "C5627T", "G5775A", "G5781A", "-5799T", "A5805G", "C5922T", "C6174A", "C6184A", "C6202T", "A6203G", "-6204T", "A6209C", "A6214G", "G6638A", "A6837G", "-6843A", "A7533G", "G7640A", "T7775C", "A7818G", "A7846G", "C8047T", "A8111G", "A8196G", "C8794A", "G8804A", "A8909G", "G8991A"], "RT-p66": ["L517I"], "gp120": ["-366S"], "gp41": ["K77R", "K172R", "T270A", "N298S"], "nef": ["A151E"], "p17": ["G123E", "S125N"], "p24": ["R154K"], "rev": ["R14T", "D88G"], "tat": ["V29K", "Q60H"], "vif": ["V31I", "S95N", "I128L", "Y135F", "R184K"]}, "labels": {"aa": "RT-p66: L517I; gp120: -366S; gp41: K77R, K172R, T270A, N298S; nef: A151E; p17: G123E, S125N; p24: R154K; rev: R14T, D88G; tat: V29K, Q60H; vif: V31I, S95N, I128L, Y135F, R184K"}}, "children": [{"name": "FR846409", "node_attrs": {"div": 0.16834, "accession": "FR846409", "clade_membership": {"value": "G"}, "country": {"value": "PT"}, "Strain_name": {"value": "PT3306"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G158A", "A203G", "A303T", "A386G", "C403A", "A426C", "G463A", "A481G", "A492T", "G495A", "C522A", "C537G", "T571A", "G607A", "A619G", "A632G", "G662A", "A666G", "C722T", "C782T", "C936T", "C1004T", "G1016A", "A1025C", "T1040C", "A1086G", "A1101G", "G1173A", "T1174C", "A1205G", "T1214C", "G1278A", "G1279A", "A1367G", "C1403T", "-1455G", "-1456C", "-1457A", "A1458-", "C1459-", "A1460-", "A1461G", "T1465C", "A1476G", "A1588G", "G1592A", "A1656C", "G1664A", "T1676C", "G1697A", "A1701T", "A1733G", "T1741C", "-1775G", "A1828C", "A1876T", "A1879G", "T1903G", "A1927G", "A2007G", "G2068A", "A2119C", "G2223A", "T2245A", "C2263T", "A2293G", "A2313G", "T2488C", "A2498T", "G2518A", "A2579G", "T2581A", "C2605A", "A2613G", "C2671T", "A2677G", "G2682A", "A2755G", "T2770C", "A2821G", "A2920G", "A2962G", "C2968A", "A2969G", "G3025A", "A3055G", "A3116G", "A3238G", "A3264G", "C3275A", "C3377A", "G3379C", "C3394A", "C3499T", "C3500A", "A3502C", "A3520G", "A3622G", "T3628C", "A3670G", "A3684G", "T3695A", "G3718A", "G3769A", "C3861T", "G3945A", "T3977C", "G3997A", "C4006A", "A4071T", "A4076T", "G4087A", "G4092C", "T4117C", "T4177C", "C4216T", "C4288T", "T4396C", "A4427T", "T4455A", "A4555G", "G4573A", "A4608G", "A4709G", "G4786C", "A4816G", "T4827C", "A4869C", "T4976A", "C5005A", "A5049C", "C5053A", "A5054G", "C5056A", "G5061A", "C5146A", "T5171C", "G5179C", "A5185G", "T5197C", "A5200G", "C5215T", "T5245C", "A5247G", "A5293G", "A5305G", "T5319A", "A5366G", "C5382T", "G5385A", "C5397T", "T5430A", "G5558A", "A5612T", "A5616C", "G5620C", "T5636C", "A5643G", "G5647C", "C5664T", "A5721G", "G5730A", "A5742G", "G5812-", "-5824A", "A5849T", "G5893A", "C5920T", "A5921G", "C5924T", "T5929C", "G5972A", "C6004T", "A6009G", "C6010T", "C6023G", "C6024A", "T6025G", "A6038G", "C6039T", "A6051G", "A6112G", "A6113G", "G6133A", "T6171C", "A6173T", "A6176G", "A6177C", "T6178A", "A6182G", "C6183T", "A6186C", "T6187C", "C6193T", "-6195G", "-6201G", "-6205G", "A6212G", "-6215G", "-6216T", "-6217T", "A6219G", "-6222A", "A6223T", "G6224A", "A6263T", "A6265G", "A6275C", "A6311G", "T6315A", "C6318A", "G6323A", "A6324G", "C6370A", "C6412T", "T6438A", "A6449G", "A6450T", "G6463A", "G6466C", "A6471C", "A6488T", "A6490C", "A6525G", "G6532A", "A6584G", "A6599T", "A6602T", "T6618C", "A6639G", "A6640G", "A6668G", "A6684G", "A6694C", "-6698G", "-6699C", "-6700A", "-6701C", "-6702C", "-6703A", "C6708A", "G6711C", "A6712G", "C6713A", "A6714T", "A6715C", "G6716-", "C6717-", "G6718-", "T6720A", "C6721T", "T6722G", "A6723C", "T6724A", "G6725A", "A6728G", "C6729G", "A6730T", "G6732A", "A6767G", "G6774A", "A6776C", "C6777A", "G6779A", "A6780G", "A6781C", "A6785T", "A6788T", "A6791G", "A6819G", "T6828A", "-6830A", "-6831A", "-6832G", "A6839T", "A6840C", "G6841T", "C6850T", "T6852C", "A6854G", "C6856A", "C6861A", "G6863C", "T6875G", "A6881G", "G6894T", "A6936G", "A6937G", "-6953C", "-6954A", "-6955A", "A6960T", "T6961G", "G6963A", "-6966T", "-6969G", "T6973-", "-6980C", "-6981A", "-6982G", "-6983T", "-6984A", "-6985T", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "-6991T", "-6992A", "-6993G", "-6994T", "-6995T", "-6996A", "-6997T", "-6998G", "-6999A", "-7000A", "-7001A", "-7002A", "-7003T", "-7006T", "C7087A", "A7106G", "C7124T", "A7133G", "C7134A", "A7151C", "A7152T", "A7163C", "-7164C", "G7168A", "C7182T", "G7197A", "G7199A", "G7225A", "A7239G", "C7264T", "G7291A", "G7307-", "T7308-", "T7309-", "C7313A", "G7315A", "C7325A", "C7328T", "A7343G", "G7441A", "T7444A", "G7513A", "G7517C", "T7545C", "G7604A", "A7621G", "T7624A", "T7625C", "G7631T", "A7633C", "T7642G", "G7648A", "C7691G", "A7713T", "T7715G", "G7720A", "A7722C", "A7733C", "G7754T", "T7774C", "A7781G", "A7799C", "T7852C", "C7926T", "T7930C", "A7931C", "C7951A", "G7957A", "C7960A", "G7962A", "G8001A", "G8019A", "C8038T", "C8103T", "G8143A", "T8176C", "T8213C", "A8228G", "A8254G", "T8268G", "T8278A", "G8284A", "C8293T", "T8331C", "G8350C", "A8364G", "G8365T", "T8366C", "G8378A", "G8387A", "G8388A", "A8400C", "C8411A", "C8412G", "T8414A", "C8415G", "T8440C", "C8480A", "C8492T", "A8522G", "T8534G", "G8554A", "G8570A", "T8582C", "G8588A", "T8591A", "T8636A", "A8643G", "A8662G", "T8701A", "C8702T", "C8740T", "T8746A", "A8750C", "T8789A", "G8799A", "A8812C", "A8815T", "C8843T", "A8851T", "T8867C", "T8903C", "A8970T", "C8975T", "C9028T", "C9040T", "C9068T", "C9073T"], "INT": ["D11E", "P29L", "S57N", "Y99F", "I101L", "G106A", "T218S", "F227Y", "D278G"], "RT-p51": ["R43K", "K73R", "V135L", "S162G", "I173R", "G196E", "D291E", "I292V", "I341V", "K390R", "R428S"], "RT-p66": ["R43K", "K73R", "V135L", "S162G", "I173R", "G196E", "D291E", "I292V", "I341V", "K390R", "R428S", "L469I", "K530R", "S534T"], "gp120": ["T23V", "V40I", "N52S", "P57E", "E59K", "T62V", "N66S", "S87G", "-105N", "-106A", "-107Y", "V109S", "-111S", "-112T", "N113G", "-114N", "-116T", "-117V", "-118S", "-119P", "-120V", "-121V", "-122G", "-123N", "G124K", "I137L", "K141Q", "I153V", "V154E", "P155Q", "D158G", "N159S", "F195Y", "K199V", "E204N", "N206T", "K212Y", "K224R", "I244V", "I249F", "T250S", "I255T", "E262R", "I264N", "N265L", "T267N", "N272G", "K277R", "-282A", "G284-", "F289I", "I305V", "R307K", "T308Q", "E309S", "N311Y", "N312Y", "M313V", "K319A", "-322R", "F325-", "N328-", "K329-", "T330-", "I331-", "T332I", "F333Y", "N334K", "S335N", "L341V", "I343V", "S347I", "-367Q", "-368F", "-369M", "S370N", "-371I", "-372S", "S373Q", "N374Y", "N376-", "-379N", "-380S", "-381Y", "-382E", "-383N", "-384D", "K418V", "T427E", "E432N", "N433L", "T436S", "N437I", "A443V", "R448K", "D449N", "K462R"], "gp41": ["V2-", "L4I", "L8I", "L9F", "T14A", "V72L", "L81P", "A101T", "Y108H", "E110Y", "D113K", "N125S", "Q130E", "E137V", "S138A", "N140T", "K144Q", "A151S", "N160D", "N166H", "T208I", "T210P", "G220E", "S239N", "A267V", "F304L", "I309V", "V322G"], "nef": ["G3A", "S8V", "V16I", "I20L", "P24R", "P25Q", "V33A", "S46R", "D64E", "R71K", "A83G", "D98E", "I101V", "Q107R", "F120Y", "T133I", "F135Y", "D149E", "V153I", "N157T", "K158I", "Q170L", "E201D"], "p1": ["N9H"], "p17": ["P23Q", "M31L", "R43K", "D49G", "T53S", "A54T", "Q63K", "L68V", "F79Y", "R91K", "K95R", "S111G"], "p2": ["A7V", "S8T"], "p24": ["Q86P", "E98D", "T119A", "I124V", "V148T", "G183N"], "p6": ["T8S", "I21T", "*50S"], "p7": ["S4G", "K41R"], "pro": ["D35E", "K70R"], "rev": ["A15T", "Y28P", "A37T", "G99R"], "tat": ["S61N", "P73S", "L74S", "P81Q", "G83D", "P84Q", "E85K"], "vif": ["M8V", "R67T", "K77R", "N95H", "S130R", "T140N", "T155P", "P156Q", "T157K", "A159T", "P187H"], "vpr": ["E25D", "N48S", "I63M", "F72Y", "P93S", "G94S"], "vpu": ["Q2L", "E5Q", "A7F", "V10A", "V14L", "D69N", "N81I"]}, "labels": {"aa": "INT: D11E, P29L, S57N, Y99F, I101L, G106A, T218S, F227Y, D278G; RT-p51: R43K, K73R, V135L, S162G, I173R, G196E, D291E, I292V, I341V, K390R, R428S; RT-p66: R43K, K73R, V135L, S162G, I173R, G196E, D291E, I292V, I341V, K390R, R428S, L469I, K530R, S534T; gp120: T23V, V40I, N52S, P57E, E59K, T62V, N66S, S87G, -105N, -106A, -107Y, V109S, -111S, -112T, N113G, -114N, -116T, -117V, -118S, -119P, -120V, -121V, -122G, -123N, G124K, I137L, K141Q, I153V, V154E, P155Q, D158G, N159S, F195Y, K199V, E204N, N206T, K212Y, K224R, I244V, I249F, T250S, I255T, E262R, I264N, N265L, T267N, N272G, K277R, -282A, G284-, F289I, I305V, R307K, T308Q, E309S, N311Y, N312Y, M313V, K319A, -322R, F325-, N328-, K329-, T330-, I331-, T332I, F333Y, N334K, S335N, L341V, I343V, S347I, -367Q, -368F, -369M, S370N, -371I, -372S, S373Q, N374Y, N376-, -379N, -380S, -381Y, -382E, -383N, -384D, K418V, T427E, E432N, N433L, T436S, N437I, A443V, R448K, D449N, K462R; gp41: V2-, L4I, L8I, L9F, T14A, V72L, L81P, A101T, Y108H, E110Y, D113K, N125S, Q130E, E137V, S138A, N140T, K144Q, A151S, N160D, N166H, T208I, T210P, G220E, S239N, A267V, F304L, I309V, V322G; nef: G3A, S8V, V16I, I20L, P24R, P25Q, V33A, S46R, D64E, R71K, A83G, D98E, I101V, Q107R, F120Y, T133I, F135Y, D149E, V153I, N157T, K158I, Q170L, E201D; p1: N9H; p17: P23Q, M31L, R43K, D49G, T53S, A54T, Q63K, L68V, F79Y, R91K, K95R, S111G; p2: A7V, S8T; p24: Q86P, E98D, T119A, I124V, V148T, G183N; p6: T8S, I21T, *50S; p7: S4G, K41R; pro: D35E, K70R; rev: A15T, Y28P, A37T, G99R; tat: S61N, P73S, L74S, P81Q, G83D, P84Q, E85K; vif: M8V, R67T, K77R, N95H, S130R, T140N, T155P, P156Q, T157K, A159T, P187H; vpr: E25D, N48S, I63M, F72Y, P93S, G94S; vpu: Q2L, E5Q, A7F, V10A, V14L, D69N, N81I"}}}, {"name": "FR846408", "node_attrs": {"div": 0.1588, "accession": "FR846408", "clade_membership": {"value": "G"}, "country": {"value": "PT"}, "Strain_name": {"value": "PT3037"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "C217T", "T250C", "A263T", "A268G", "-304A", "-305A", "C362T", "G378T", "C456A", "A461C", "T479C", "T485C", "G520A", "G534T", "C540A", "C558A", "T572C", "A584C", "A605T", "G614T", "A643T", "A672G", "G699A", "A704G", "A759C", "T760C", "G761A", "T789C", "A869G", "C950T", "G954A", "A980G", "C988A", "T1001C", "A1024G", "A1112G", "A1115C", "G1218A", "C1292A", "T1299C", "G1301A", "A1391C", "G1442C", "G1487A", "C1535T", "A1567G", "C1610T", "C1712A", "-1775C", "G1819A", "G1839A", "C1864T", "C1913T", "A1982G", "G2074A", "T2107C", "T2116A", "A2191G", "A2221G", "T2380C", "G2389A", "G2473A", "A2498G", "A2500C", "G2539A", "A2599G", "A2612G", "A2614C", "T2653C", "T2689C", "A2714C", "C2728A", "C2740T", "T2803C", "A2838T", "A2846G", "G2998A", "C3006A", "C3133T", "G3173A", "G3229A", "T3240A", "G3243A", "G3244T", "A3247G", "A3248G", "G3378A", "G3428A", "G3440A", "A3483G", "A3508T", "C3517T", "T3541C", "A3583C", "A3643G", "G3679A", "G3737A", "G3808T", "G3816A", "C3857T", "T3967C", "T3970C", "T3977G", "A4090T", "C4258T", "G4267A", "G4388T", "A4513G", "G4549A", "A4643G", "T4691A", "A4694G", "C4757T", "C4776A", "G4786A", "G4829A", "G4859A", "C4914T", "G4923A", "C4925T", "A4951G", "T4959A", "A4988C", "A4993C", "A4997G", "A5059G", "C5062T", "A5134G", "T5203C", "C5242T", "A5336T", "C5351T", "G5363A", "G5370A", "T5439C", "C5445T", "A5547G", "C5556T", "T5568C", "A5576C", "A5613G", "A5622C", "T5626G", "A5652G", "C5685T", "A5693T", "A5694G", "A5727C", "A5729G", "G5747A", "C5833G", "G5908A", "T5911G", "T5992C", "A6022C", "A6029G", "G6088A", "C6165A", "T6166A", "A6177G", "T6178C", "A6180C", "C6183A", "A6188G", "G6189C", "C6190A", "A6192C", "-6195C", "A6197C", "-6201C", "-6205A", "C6210T", "-6215A", "-6216A", "-6217G", "-6222C", "A6225G", "G6280A", "A6286G", "C6289T", "G6329A", "G6330A", "A6336C", "T6337A", "G6339A", "G6392A", "A6464G", "C6548T", "G6583A", "A6605G", "G6628A", "A6639C", "A6644G", "A6648G", "G6669A", "A6692C", "G6693C", "T6695A", "C6758T", "A6789G", "T6792C", "A6800G", "T6808A", "G6809A", "C6810A", "C6815T", "A6818-", "A6819-", "A6820-", "A6824C", "T6825A", "C6826A", "T6829C", "-6830T", "-6831T", "-6832T", "A6836G", "C6844A", "C6857T", "A6913G", "-6953A", "-6954G", "-6955T", "T6956C", "T6958G", "A6959G", "A6960C", "-6966A", "T6967C", "-6969A", "-6971A", "-6972G", "-6974A", "-6975A", "-6976T", "-6977G", "-6978A", "-6979A", "G7004-", "A7005-", "C7008A", "G7026A", "C7077T", "G7088A", "C7089G", "A7090G", "A7094G", "C7096A", "T7107A", "T7150A", "A7158C", "T7159A", "G7160A", "G7162T", "A7163-", "T7165-", "T7170C", "G7256A", "G7269A", "A7274C", "G7295A", "T7309G", "G7340A", "A7342C", "G7495A", "T7509C", "A7532C", "A7590C", "T7609C", "A7633T", "C7658G", "G7677A", "A7690C", "A7693G", "A7701G", "C7703T", "A7722T", "C7723T", "A7782G", "C7801T", "C7805T", "A7832G", "T7968C", "C7969A", "G7977A", "G7997A", "T8171G", "A8191G", "G8194A", "A8208G", "G8222A", "T8265C", "G8267A", "G8276T", "T8290G", "T8292G", "A8297G", "A8299G", "G8303A", "T8304G", "T8321G", "T8322C", "A8323C", "A8329G", "G8330C", "G8354A", "G8385A", "A8396T", "G8407A", "G8436C", "G8458A", "A8469G", "G8490A", "G8537A", "G8590C", "T8645A", "C8676T", "T8745C", "C8771T", "A8783C", "G8787A", "G8798A", "G8818A", "G8861A", "G8868C", "C8873T", "A8875G", "A8922C", "C8945G", "T8973C", "A8998G", "C9017T", "A9034C", "C9078T", "T9146C", "G9175T"], "INT": ["R14K", "L68V", "A205S"], "RT-p51": ["I173D", "K207Q", "S211R", "D248V", "S251G", "A304E", "A360T", "I382K", "W383Y", "K385E", "R428Q"], "RT-p66": ["I173D", "K207Q", "S211R", "D248V", "S251G", "A304E", "A360T", "I382K", "W383Y", "K385E", "R428Q", "A445T", "E449K", "K463R", "E471D", "V548I"], "gp120": ["D19E", "T23I", "-105S", "-106L", "-107M", "N108K", "V109D", "N113-", "S115-", "N160G", "N161T", "S162N", "V180M", "M243I", "N251D", "E262T", "I264V", "N265S", "S280P", "F281I", "H302Y", "N312S", "M313T", "N316D", "-324Q", "-326F", "-327N", "N328G", "T330K", "S337A", "G361E", "-367S", "-368L", "-369A", "-371N", "-372N", "-375E", "N378-", "T385-", "R391K", "A408V", "A412R", "N414E", "E432K", "N433-", "I439T", "V468I", "R472K", "E481K"], "gp41": ["G13S", "V69A", "N96T", "E110D", "D113N", "Q119E", "Q129H", "N133S", "N140I", "N160S", "I177V", "I222T", "G225E", "D232N", "K233R", "L290V", "N302S", "V307I", "V321A", "V322I", "V325F", "F329L", "L330R", "I332V", "V334R", "L340A", "A343L"], "nef": ["E15K", "E18D", "R22Q", "A32P", "R39K", "I43V", "A50T", "F135L", "D149N", "G159E", "M173I", "A176P", "K178R", "I194L"], "p17": ["A15S", "L41M", "E42D", "G62E", "A67S", "Q69K", "L75I", "Q90H", "E93D", "E103V", "K113E", "E122K"], "p2": ["Q6H"], "p24": ["M10P", "E75K", "I83M", "E98G", "E128D", "D163N", "D187E"], "p6": ["E32D", "S47N"], "p7": ["K34R"], "pro": ["R14K", "P39S", "I62V"], "rev": ["E11G", "T14I", "I18T", "I21L", "R50K", "V108G", "K115E", "E116K"], "tat": ["N67T", "S87Q"], "vif": ["L64I", "R67K", "H110Y", "D113N", "K122R", "L125I", "E134D", "Q136P", "K158R", "A159V", "H183R"], "vpr": ["Q77H", "V89I"], "vpu": ["E5D", "A7V", "Q29L", "E40D", "K41R", "R47K", "-72A", "P76-"]}, "labels": {"aa": "INT: R14K, L68V, A205S; RT-p51: I173D, K207Q, S211R, D248V, S251G, A304E, A360T, I382K, W383Y, K385E, R428Q; RT-p66: I173D, K207Q, S211R, D248V, S251G, A304E, A360T, I382K, W383Y, K385E, R428Q, A445T, E449K, K463R, E471D, V548I; gp120: D19E, T23I, -105S, -106L, -107M, N108K, V109D, N113-, S115-, N160G, N161T, S162N, V180M, M243I, N251D, E262T, I264V, N265S, S280P, F281I, H302Y, N312S, M313T, N316D, -324Q, -326F, -327N, N328G, T330K, S337A, G361E, -367S, -368L, -369A, -371N, -372N, -375E, N378-, T385-, R391K, A408V, A412R, N414E, E432K, N433-, I439T, V468I, R472K, E481K; gp41: G13S, V69A, N96T, E110D, D113N, Q119E, Q129H, N133S, N140I, N160S, I177V, I222T, G225E, D232N, K233R, L290V, N302S, V307I, V321A, V322I, V325F, F329L, L330R, I332V, V334R, L340A, A343L; nef: E15K, E18D, R22Q, A32P, R39K, I43V, A50T, F135L, D149N, G159E, M173I, A176P, K178R, I194L; p17: A15S, L41M, E42D, G62E, A67S, Q69K, L75I, Q90H, E93D, E103V, K113E, E122K; p2: Q6H; p24: M10P, E75K, I83M, E98G, E128D, D163N, D187E; p6: E32D, S47N; p7: K34R; pro: R14K, P39S, I62V; rev: E11G, T14I, I18T, I21L, R50K, V108G, K115E, E116K; tat: N67T, S87Q; vif: L64I, R67K, H110Y, D113N, K122R, L125I, E134D, Q136P, K158R, A159V, H183R; vpr: Q77H, V89I; vpu: E5D, A7V, Q29L, E40D, K41R, R47K, -72A, P76-"}}}]}, {"name": "G_NODE_0000019", "node_attrs": {"div": 0.12697999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C160T", "-304A", "-305A", "C587A", "T1787C", "A1867G", "T2499C", "A2613T", "A3103G", "A3524G", "G3808C", "C3826T", "A3866G", "A3961G", "T4261C", "A4717T", "A4966G", "A5159G", "C5556G", "C5678T", "G5725C", "T5787C", "C5792A", "C5795A", "C5797-", "T5798-", "G5800T", "A5804C", "T5807C", "G5808C", "G5809C", "G5810T", "G5811T", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824G", "A6159C", "C6183G", "C6198G", "C6482T", "T6618A", "G6799A", "-6955G", "-7006C", "A7155C", "T7156A", "-7164C", "G7628A", "C7651A", "C7898A", "C8123T", "A8269G", "A8323G", "A8342C", "A8876G", "A8879G", "G8943A"], "INT": ["I31V"], "RT-p51": ["V135T", "Q334P"], "RT-p66": ["V135T", "Q334P", "R461K", "T477A"], "gp120": ["N102T", "-112N", "-116S", "I255N", "-322K", "-324I", "S335P", "G361K", "-377S", "-384D"], "gp41": ["D109N", "N125S", "Q199K", "G226D", "F329I"], "nef": ["S8C", "A83S", "E201N"], "rev": ["P92L"], "vif": ["Y44F", "E127G"], "vpr": ["T19A"], "vpu": ["T24I", "E40Q", "E60D", "L61T", "A62E", "A63E", "V65A", "E66T", "M67L", "G68-", "D69V", "F70E", "D71M", "-72G", "-73D", "-74F", "-75D"]}, "labels": {"aa": "INT: I31V; RT-p51: V135T, Q334P; RT-p66: V135T, Q334P, R461K, T477A; gp120: N102T, -112N, -116S, I255N, -322K, -324I, S335P, G361K, -377S, -384D; gp41: D109N, N125S, Q199K, G226D, F329I; nef: S8C, A83S, E201N; rev: P92L; vif: Y44F, E127G; vpr: T19A; vpu: T24I, E40Q, E60D, L61T, A62E, A63E, V65A, E66T, M67L, G68-, D69V, F70E, D71M, -72G, -73D, -74F, -75D"}}, "children": [{"name": "AY612637", "node_attrs": {"div": 0.14611999999999997, "accession": "AY612637", "clade_membership": {"value": "G"}, "country": {"value": "PT"}, "Strain_name": {"value": "PT2695"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C179A", "C217A", "A286G", "T302A", "G463A", "G519A", "G527A", "G654A", "A675C", "C950T", "C988A", "T1299C", "A1359T", "T1481C", "T1598C", "A1694C", "-1775C", "-1782T", "G1794A", "C1960T", "T2104C", "G2182A", "A2233G", "C2266T", "G2389A", "G2428A", "A2611G", "T2689C", "G2727A", "G2761A", "T2803C", "A2809G", "A2842G", "G2921A", "G3010A", "G3016A", "T3096C", "A3099G", "T3121C", "G3398A", "C3399T", "A3448G", "G3477A", "A3491G", "A3523G", "G3563A", "T3566C", "C3577T", "G3626A", "G3630A", "G3816A", "G3834A", "A3868G", "T3967C", "A3988G", "A4107G", "T4123C", "A4175G", "A4420G", "A4466C", "A4644G", "T4702C", "G4726T", "A4748C", "T4835C", "G4913A", "A4956T", "T5047C", "C5221T", "G5302A", "C5303T", "G5308A", "T5356C", "A5461G", "T5562C", "A5564C", "C5585G", "T5604G", "C5614T", "A5621G", "C5627T", "A5718C", "A5793C", "C5808T", "G5839A", "T5980C", "C6026A", "A6031G", "T6151C", "A6177T", "A6186G", "-6195G", "A6200G", "-6201T", "C6202A", "-6204C", "-6205C", "T6213G", "A6214C", "-6215A", "-6216C", "-6217T", "A6219T", "C6220G", "-6222G", "G6267A", "A6273G", "A6276G", "C6298T", "G6323A", "T6334G", "A6464G", "C6483T", "A6553G", "T6556C", "A6574G", "A6604G", "G6628A", "T6634C", "A6644G", "A6647C", "A6648C", "A6655G", "A6659G", "C6673T", "C6697T", "G6732A", "C6777T", "G6779A", "A6780G", "A6785G", "T6787A", "T6795A", "A6818G", "G6821A", "C6826A", "-6830A", "-6831A", "-6832A", "C6835G", "A6839-", "A6840-", "G6841-", "A6842-", "C6844-", "T6860C", "C6862T", "A6900T", "A6912G", "C6919T", "A6936C", "-6953A", "-6954G", "T6957C", "-6966A", "-6969G", "-6971A", "-6972G", "-6974A", "-6975A", "-6976T", "T7009C", "C7089A", "C7114T", "G7147T", "A7151G", "A7152G", "C7182T", "G7259A", "T7432C", "A7572G", "C7582T", "G7631C", "A7701C", "A7711G", "G7753A", "A7772G", "G7773A", "A7800G", 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"gp41": ["K90R", "E110Q", "N133T", "S157D", "N166R", "R259H", "Q294R", "F304I", "V318A", "A343L"], "nef": ["T23A", "P25S", "E62N", "F85L", "D98E"], "p17": ["R43K", "G62R", "A107T", "K114Q"], "p24": ["T210S"], "p6": ["E32D", "A39T"], "rev": ["V16A", "Q24E", "A37T", "I59V", "A68T", "V97L"], "tat": ["K63T", "P70R", "G83D"], "vif": ["T20A", "F39S", "R47M", "E54D", "I124L", "V154A"], "vpr": ["I84T"], "vpu": ["P3S", "E5G", "A7F", "K37N", "E62D", "V78I"]}, "labels": {"aa": "INT: R14K, R20K, K111R, N134D; RT-p51: S211N, V276I, D335G, A435I; RT-p66: S211N, V276I, D335G, A435I, I466V, G490R, S491P, D511N, R512K; gp120: L58M, E59K, -111I, N113V, -114T, -117G, -118S, -119T, -120A, -121G, -122Y, -123R, G124E, R138K, K140R, K141R, D157N, N159G, N160R, P210L, I264V, N265P, T269A, N272S, S280R, A291T, T292D, G293A, D294I, T308I, E309R, N311E, I314K, K319A, K322E, E323K, -326K, -327K, K329I, I331-, T332-, S336P, S337A, N349I, E353G, K361A, -371S, -372L, -375S, N378S, -379N, A412E, K418M, T436E, N437T, A443V, A469T; gp41: K90R, E110Q, N133T, S157D, N166R, R259H, Q294R, F304I, V318A, A343L; nef: T23A, P25S, E62N, F85L, D98E; p17: R43K, G62R, A107T, K114Q; p24: T210S; p6: E32D, A39T; rev: V16A, Q24E, A37T, I59V, A68T, V97L; tat: K63T, P70R, G83D; vif: T20A, F39S, R47M, E54D, I124L, V154A; vpr: I84T; vpu: P3S, E5G, A7F, K37N, E62D, V78I"}}}, {"name": "G_NODE_0000020", "node_attrs": {"div": 0.13243, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["-678C", "-679A", "-680A", "T718C", "G1442A", "T1501C", "A1894G", "A1951T", "G2248A", "A2317G", "T2860C", "G3236A", "G3544A", "C3545A", "G3869A", "T4916C", "T5462G", "A5548C", "G5561A", "T5626G", "A5729G", "T5778C", "A5793G", "C5826T", "A5867G", "T6175C", "-6201A", "-6205T", "A6212G", "A6225G", "C6289T", "G6326A", "G6451A", "A6529G", "G6533A", "T6637G", "A6641G", "A6694C", "G6809A", "C6810A", "G6863T", "T6916C", "A6937G", "-7001A", "-7002A", "-7003T", "T7107G", "C7134T", "G7977A", "G7995A", "C8038G", "C8051A", "C8062T", "G8222T", "T8268G", "G8388A", "C8810T"], "INT": ["V32I"], "RT-p51": ["V381I"], "RT-p66": ["V381I", "L484I"], "gp120": ["N5D", "-114S", "-117V", "D158N", "S162-", "P210S", "V227I", "N261K", "T263A", "T427I"], "gp41": ["G225E", "R231K", "V307L", "V322G"], "nef": ["V16I"], "p17": ["V128A"], "p7": ["M12T"], "rev": ["E11D", "V16I", "L64V", "A68E", "P72S"], "tat": ["V29R", "T58P", "S62N"], "vpu": ["K41R"]}, "labels": {"aa": "INT: V32I; RT-p51: V381I; RT-p66: V381I, L484I; gp120: N5D, -114S, -117V, D158N, S162-, P210S, V227I, N261K, T263A, T427I; gp41: G225E, R231K, V307L, V322G; nef: V16I; p17: V128A; p7: M12T; rev: E11D, V16I, L64V, A68E, P72S; tat: V29R, T58P, S62N; vpu: K41R"}}, "children": [{"name": "MH746255", "node_attrs": {"div": 0.1674, "accession": "MH746255", "clade_membership": {"value": "G"}, "country": {"value": "BG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "V_09_011"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "A374G", "G398A", "G407A", "A425G", "A481G", "G520T", "G562A", "A563G", "G607A", "T635C", "G667C", "C684-", "A685-", "G686-", "A706G", "A716G", "G743A", "T746C", "C782T", "T788G", "A818G", "G878T", "A978C", "C987T", "G1016A", "G1192A", "A1196G", "T1229C", "C1235T", "T1385C", "A1404G", "G1419A", "C1444T", "G1452A", "A1467G", "G1469A", "A1476G", "C1514T", "A1562G", "A1567G", "C1610T", "G1619A", "T1722C", "G1773A", "-1775G", "A1776G", "G1781T", "-1782T", "G1794A", "A1804G", "G1819A", "G1839A", "G1968A", "T2011C", "A2018G", "G2068A", "T2110C", "G2155A", "C2211T", "A2293G", "T2302A", "A2329G", "G2392A", "T2393C", "T2425C", "G2548A", "A2637G", "T2749C", "G2830A", "G2833A", "C2857T", "G2872A", "A2911C", "A2920G", "A2925G", "A3001G", "G3004A", "T3034A", "A3043G", "C3046T", "A3051G", "G3080A", "A3091G", "G3093A", "T3096C", "A3099G", "G3127A", "A3217G", "C3225G", "G3293A", "T3294C", "C3319T", "T3343C", "A3361G", "T3376C", "C3399T", "T3469G", "A3476G", "A3484G", "T3505G", "A3570C", "C3668T", 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"vpr": ["E58K", "R62K", "P93S"], "vpu": ["P3S", "E5G", "I24S", "K37R", "D73N", "L82V"]}, "labels": {"aa": "INT: R14K, S17T, M50I, S57N, I112M; RT-p51: T39I, Y181C, K277R, Y319C, V329I, G333E, D335G, T377R, V400T, A435V; RT-p66: T39I, Y181C, K277R, Y319C, V329I, G333E, D335G, T377R, V400T, A435V, K461G, E492A, S554K; gp120: N4K, S37R, E59K, N64K, -105N, -106V, -107T, V109N, T110V, -111T, N112S, -118E, -119Y, -120I, -121R, -122E, -123L, G124-, E125-, L126-, I133T, K141Q, N160S, N161A, -162D, S181T, K203S, E204N, K212R, E241D, S246T, E262K, N272S, S280H, F281I, F289L, A291T, T292D, G293A, D294I, I298T, R307G, T308P, N311R, N312E, I314M, K319N, E323K, I324T, -326I, -327G, K329I, N334E, S370-, N374E, -375L, N376G, -379N, -380T, -381N, A412E, N420E, N433T, N435R, I439T; gp41: E110D, D148E, S165T, V190M, D226G, K233R, I235V, A245T, C253V, R259L, I266V, G281S, I329L, N331H; nef: C8S, V30A, L58V, E62G, D64E, F85C, T133V, A156L, A176I, N201S; p17: D49G, G62V, R76K, R91K, S111T, N124S; p2: A7V, -10T, A11-; p24: I83L, Q86S, R154K, S225G, V230I; p6: F15L, E32K, K33E, E34D, A39T, K42R, S47N; p7: M1V, S4G, K34R; pro: R14K, R57K, T74A; rev: I21L, H53R, S54A, I55L, I59V, C63Y, S67L, V71G, D84G, G99E; tat: N7S, V36I, G57R, N67T; vif: V31I, K36S, F39V, V65I, D78E, R93S, I124L, I128V, P156L, A159T, T170A; vpr: E58K, R62K, P93S; vpu: P3S, E5G, I24S, K37R, D73N, L82V"}}}, {"name": "AF450098", "node_attrs": {"div": 0.15017999999999998, "accession": "AF450098", "clade_membership": {"value": "G"}, "country": {"value": "ES"}, "date": {"value": 1999.0}, "Strain_name": {"value": "X138"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A509G", "A576G", "A613G", "G709A", "C845T", "A908G", "A980G", "C988A", "G1031A", "A1205G", "T1220C", "A1226T", "C1292A", "T1322C", "A1418G", "T1446A", "A1472G", "A1495G", "G1543A", "T1547C", "A1694G", "G1725A", "C1768A", "-1775A", "G1781A", "T1783-", "A1784-", "G1852A", "T1854C", "A1934T", "A1988G", "C2072A", "A2194T", "A2416G", 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"A7714C", "C7792T", "A7799C", "G7980A", "G8001A", "A8032G", "C8092A", "A8093C", "G8105A", "G8130A", "G8143T", "C8156T", "T8159G", "C8165G", "G8170A", "T8174A", "T8256C", "G8264T", "T8288A", "C8320A", "G8330A", "G8335A", "A8364T", "G8404A", "A8657G", "A8719G", "C8723T", "T8779A", "A8812C", "A8814G", "G8876T", "G8886A", "G8893A", "G8905A", "A8924G", "C8945T", "C8966T"], "INT": ["A124T", "E212A"], "RT-p51": ["P334L"], "RT-p66": ["P334L"], "gp120": ["S1N", "D21N", "-111N", "S116T", "-118D", "-123K", "K150R", "N159-", "N160-", "N161-", "G240E", "M243I", "N251D", "A253T", "T269I", "D297N", "H302Y", "S306N", "Q315N", "T318S", "-327N", "T330S", "S336P", "K361Q", "-366S", "-367L", "-368S", "-369N", "-371G", "-372N", "S373L", "N374T", "-375N", "N376S", "K418R", "E432T", "N433D", "N434T", "T436G", "N437T", "R448K", "V460I", "G479E"], "gp41": ["K77E", "K90R", "E137D", "N166H", "F263L", "I264L", "A268T", "R276H", "S277R", "E280D", "W286G", "L288V", "Y291N", "V318A", "V321L", "A343I"], "nef": ["R21K", "S83G", "N126S", "V146E", "N157T", "K158E", "K178N", "V182I", "R184K", "I194M"], "p17": ["T81A", "E93G", "-115Q", "S125N"], "p2": ["S8T"], "p24": ["I83M", "D187E"], "p6": ["G16R", "P30Q", "L35-"], "p7": ["K10R", "R26K"], "pro": ["L19P", "M46L", "I64V", "Q92K"], "rev": ["T62A", "S67P", "H82T", "S86N", "G99W", "V104G", "S106C", "V108I", "V109E"], "tat": ["K19S", "K24N"], "vif": ["R17K", "K63T", "G127R", "V154I"], "vpr": ["I84V", "R86Q"], "vpu": ["V78I"]}, "labels": {"aa": "INT: A124T, E212A; RT-p51: P334L; RT-p66: P334L; gp120: S1N, D21N, -111N, S116T, -118D, -123K, K150R, N159-, N160-, N161-, G240E, M243I, N251D, A253T, T269I, D297N, H302Y, S306N, Q315N, T318S, -327N, T330S, S336P, K361Q, -366S, -367L, -368S, -369N, -371G, -372N, S373L, N374T, -375N, N376S, K418R, E432T, N433D, N434T, T436G, N437T, R448K, V460I, G479E; gp41: K77E, K90R, E137D, N166H, F263L, I264L, A268T, R276H, S277R, E280D, W286G, L288V, Y291N, V318A, V321L, A343I; nef: R21K, S83G, N126S, V146E, N157T, K158E, K178N, V182I, R184K, I194M; p17: T81A, E93G, -115Q, S125N; p2: S8T; p24: I83M, D187E; p6: G16R, P30Q, L35-; p7: K10R, R26K; pro: L19P, M46L, I64V, Q92K; rev: T62A, S67P, H82T, S86N, G99W, V104G, S106C, V108I, V109E; tat: K19S, K24N; vif: R17K, K63T, G127R, V154I; vpr: I84V, R86Q; vpu: V78I"}}}]}]}]}]}]}]}]}, {"name": "G_NODE_0000021", "node_attrs": {"div": 0.09273999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C974T", "T1785C", "A1786C", "T1986C", "A2716T", "T3049C", "C3275A", "T3496C", "A3724G", "A4162T", "A5159G", "A5164G", "A5668G", "-6209A", "A6313G", "T6436G", "A6709T", "T7156C", "G7459A"], "gp120": ["S37K", "E125-"], "p17": ["E122K"], "p6": ["Y36P"], "vpr": ["T19A"], "vpu": ["A7S"]}, "labels": {"aa": "gp120: S37K, E125-; p17: E122K; p6: Y36P; vpr: T19A; vpu: A7S"}}, "children": [{"name": "KJ948662", "node_attrs": {"div": 0.1401, "accession": "KJ948662", "clade_membership": {"value": "G"}, "country": {"value": "ZA"}, "date": {"value": 2001.0}, "Strain_name": {"value": "TV546"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A368G", "A417C", "A426C", "G428A", "C456A", "G495A", "A516C", "A519G", "G520T", "G534T", "G547C", "A562G", "C603A", "A700C", "G771C", "A785G", "G810A", "A815G", "G821A", "C936T", "A1115C", "C1169T", "G1173A", "T1174C", "G1199A", "G1232A", "A1242T", "C1243G", "G1247A", "G1256A", "G1278A", "G1279A", "C1280T", "T1296C", "G1324A", "G1339A", "C1351A", "G1394A", "G1455A", "A1501T", "T1502G", "G1508A", "C1541T", "G1562A", "G1592A", "C1613T", "G1619A", "A1656C", "A1687G", "C1712A", "A1733G", "A1759G", "G1766A", "-1782A", "T1783C", "A1832G", "A1841G", "G1845A", "A1903C", "A1904C", "G1972A", "C1985T", "A1988C", "A2007G", "T2053C", "A2059G", "G2065A", "T2071A", "T2087C", "T2101C", "G2173A", "T2209C", "A2221G", "A2242G", "A2293G", "A2311G", "C2326T", "C2386T", "T2449C", "G2459A", "G2463A", "G2539A", "A2545C", "C2584T", "A2599G", "C2644T", "T2653C", "T2672C", "G2682A", "A2715G", 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"L41M", "M61L", "K62V", "A67S", "G71A", "K76R", "Q90K", "K110N", "K122T"], "p2": ["A11T"], "p24": ["A14P", "V27I", "Q86P", "E128D", "V148T", "T171C", "C198Y", "R203K", "P207Q"], "p6": ["N3S", "-26R", "K27-", "L35T"], "p7": ["N12M"], "pro": ["T12A", "I15V", "G16E", "I36L", "L63S", "I64L", "K70R", "M89I"], "rev": ["T8S", "A15T", "T34S", "R38Q", "K39R", "H53R", "S54A", "I59V", "T62S", "L64V", "P67L", "A68E", "L73F", "H82T", "L83I", "D84N", "S89I", "V104E", "V109I", "S112T"], "tat": ["A21P", "H54Q", "G61D", "P73S", "N80I", "K85E"], "vif": ["V7A", "K33R", "G37D", "D61E", "K63R", "L64I", "T74K", "D78E", "H80Q", "Q91L", "D117E", "R130S", "E134D", "T155K", "T157V", "K158R", "K159R", "K160R", "R167K", "K176E", "*193W"], "vpr": ["Q3R", "E25D", "D91N", "G94S"], "vpu": ["F27L", "I28L", "Q36E", "K37R", "-68M", "V69-", "N81T"]}, "labels": {"aa": "INT: L74I, I101L, A124Q, N134S, S206T, I267V, I268L; RT-p51: E122K, G196E, E207G, S251I, K281R, A286T, D335E, R357K, T377V; RT-p66: E122K, S123D, G196E, E207G, S251I, K281R, A286T, D335E, R357K, T377V, I467V, H480Q, Q509I, K527N, S554N; gp120: S1N, T22A, A32S, K37R, V40I, T57I, E59K, N71P, N102K, -105D, -106Y, -109G, -111V, -112T, -113N, -114K, -115T, -116T, -117V, -119N, -120A, -121R, -122E, K127T, I133V, K141R, K142R, K143T, K150R, D157N, N158E, N159D, N160T, N161S, S162D, S181N, L198I, N206T, P210T, K212R, K224R, R245S, Q259R, L260F, E265K, N267K, T269I, I281F, K309E, N311E, E312G, Q315K, -318K, -319E, -322S, E323N, -324I, -326H, -327N, N328-, R351A, G361L, S365R, S366T, -367G, -368E, K391N, R401K, A412E, N432K, T436S, N437S, T439I, R472K, E479G; gp41: T101A, D109S, Q147H, D153N, K154N, N160S, S165T, N166K, K172R, I175V, L204V, T208I, L209P, E215D, E220R, R221G, G225E, D232G, R233K, I235V, F263L, I264L, L265S, A267V, A268V, V271L, S277L, W286K, N287S, V290E, I309V, V321I, V322A, A325T, C326G, L330C, F340L; p1: N9H; p17: K28Q, M31L, L41M, M61L, K62V, A67S, G71A, K76R, Q90K, K110N, K122T; p2: A11T; p24: A14P, V27I, Q86P, E128D, V148T, T171C, C198Y, R203K, P207Q; p6: N3S, -26R, K27-, L35T; p7: N12M; pro: T12A, I15V, G16E, I36L, L63S, I64L, K70R, M89I; rev: T8S, A15T, T34S, R38Q, K39R, H53R, S54A, I59V, T62S, L64V, P67L, A68E, L73F, H82T, L83I, D84N, S89I, V104E, V109I, S112T; tat: A21P, H54Q, G61D, P73S, N80I, K85E; vif: V7A, K33R, G37D, D61E, K63R, L64I, T74K, D78E, H80Q, Q91L, D117E, R130S, E134D, T155K, T157V, K158R, K159R, K160R, R167K, K176E, *193W; vpr: Q3R, E25D, D91N, G94S; vpu: F27L, I28L, Q36E, K37R, -68M, V69-, N81T"}}}, {"name": "G_NODE_0000022", "node_attrs": {"div": 0.09806999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G164A", "C435T", "T485C", "C558A", "A675G", "T694-", "A887G", "A905C", "T1409C", "A1771G", "G1781A", "G1901C", "T1954A", "T1997G", "G1998A", "T1999G", "A2002G", "A2374T", "G3250A", "G3477A", "C3500A", "T3505G", "G3808A", "G4273A", "A4519G", "A5155G", "A5555C", "G5556A", "G5964A", "T5980C", "-6195G", "-6196T", "A6229-", "A6323G", "C6843A", "A7160G", "A7303G", "A7677G", "T8167C", "T8384C", "T8440C", "C8491A", "C8492-", "G8526C", "A8726T", "G8864A"], "RT-p66": ["R461K", "L469I"], "gp120": ["T110-", "I126-", "S263T"], "gp41": ["N125S"], "nef": ["V33A", "E62Q"], "p17": ["L75I", "K114E", "M120T"], "p6": ["K31R"], "pro": ["D35Q", "L63P", "C67E"], "rev": ["R14Q", "P67S", "S107P"], "tat": ["Q60P"], "vif": ["K159I", "N190S"]}, "labels": {"aa": "RT-p66: R461K, L469I; gp120: T110-, I126-, S263T; gp41: N125S; nef: V33A, E62Q; p17: L75I, K114E, M120T; p6: K31R; pro: D35Q, L63P, C67E; rev: R14Q, P67S, S107P; tat: Q60P; vif: K159I, N190S"}}, "children": [{"name": "MH705155", "node_attrs": {"div": 0.12875999999999999, "accession": "MH705155", "clade_membership": {"value": "G"}, "country": {"value": "CD"}, "date": {"value": 1987.0}, "Strain_name": {"value": "P406"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G51A", "A101G", "T163A", "T200C", "T214A", "A216C", "-217A", "-304T", "G378A", "C379G", "G401A", "A426C", "C482T", "G495A", "T503G", "G520C", "G542A", "A606G", "C636T", "A660C", "A664C", "A674G", "A676G", "A678G", "C679T", "C691A", "-694A", "G695A", "G709A", "C767T", "T782A", "G941A", "C950T", "A978G", "C987A", "C988T", "G1139A", "T1244C", "T1385C", "C1403T", "A1404G", "C1444T", "G1455A", "C1490A", "A1493G", "G1495A", "T1535C", "A1567G", "A1715G", "G1766A", "-1782C", "G1839A", "A1840G", "A2215T", "A2241G", "G2389A", "A2406G", "A2419G", "A2727G", "A2743G", "C2885T", "A2896G", "T2908C", "G2951A", "A2956G", "C3056T", "A3067G", "A3196G", "G3211A", "A3224T", "C3517T", "T3535C", "A3543G", "G3556A", "C3559T", "T3566C", "A3583G", "T3746C", "G3756A", "A3877G", "C3908T", "A4076G", "A4107C", "C4270T", "A4438C", "A4495G", "C4576T", "T4633G", "G4642A", "A4646G", "A4650C", "C4697A", "G4786A", "A4858T", "C4890A", "A4901C", "C4937A", "G4949A", "A4950C", "A4958C", "A4976C", "A4988C", "A5094G", "C5359T", "G5362A", "T5391C", "T5466C", "A5544C", "T5602A", "A5623G", "C5679T", "T5695G", "A5696C", 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p24: I83V, Q86I, N183G, S225G; p7: R10K, K34R; pro: R14K; rev: E10A, S56G, S61A, A68T, L83I, G99R, S103L, G108V; vif: M16R, R19K, N22H, R67K, Q91L, L102I, Q105H, D117E, K122Q, R130S, E134D, T170A, *193W; vpr: P85L, S96P; vpu: I6V, Y30A, K41S, T66K"}}}, {"name": "G_NODE_0000023", "node_attrs": {"div": 0.10982999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A509G", "A571T", "G653A", "C684A", "G695-", "G696-", "A697-", "C707T", "C719T", "A785G", "G810A", "T852A", "G956A", "A978C", "G1078C", "G1192A", "T1214C", "T1262C", "A1271T", "G1278A", "G1279A", "T1335C", "G1388A", "G1452T", "T1783C", "T1796C", "G1819A", "G1968A", "G2431A", "G2462A", "G2872A", "C2985A", "A3019G", "A3067C", "A3097C", "A3154G", "T3207C", "A3251G", "A3277G", "A3367G", "A3503C", "C3504A", "C3692T", "T3695A", "G3718A", "G3766A", "A3775G", "C3799T", "A3934G", "G4145A", "C4146A", "C4258T", "C4261T", "A4372G", "G4677A", "C4757T", "A4865G", "G5128A", "T5209C", "G5212A", "G5236A", 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"T5018C", "G5075A", "T5078C", "A5119G", "G5159A", "A5186G", "A5187T", "C5209T", "G5448C", "G5461A", "T5462A", "C5539A", "G5545A", "A5547C", "C5554G", "C5614G", "A5616T", "A5637G", "C5641T", "G5654C", "C5679T", "T5686A", "G5775A", "G5812-", "-5824C", "G5864A", "A5865G", "G5915A", "A5918G", "C5920T", "A5964G", "A6022G", "C6024T", "G6028A", "A6044C", "G6079A", "T6085A", "C6145T", "A6164G", "C6165T", "A6167G", "A6172G", "A6179T", "-6180G", "T6187G", "C6189A", "G6195A", "T6196C", "-6200G", "-6201G", "-6202G", "-6203A", "-6204G", "-6211G", "A6212T", "T6213A", "-6217T", "-6220G", "A6221G", "A6225T", "-6229A", "-6230A", "G6274A", "A6304G", "C6317T", "G6323A", "A6329G", "A6332G", "G6336C", "C6364G", "G6442A", "T6466C", "A6520G", "G6532A", "T6563G", "A6576G", "T6590A", "T6600C", "G6611A", "A6640C", "T6658C", "C6661T", "A6686G", "G6687A", "T6688G", "A6692G", "G6716A", "C6717T", "T6733A", "G6743A", "A6773G", "A6775G", "A6776G", "C6777A", "A6785G", "A6786G", "T6787G", "G6790C", "T6795C", "-6806A", "A6818C", "A6823G", "A6824G", "-6830A", "-6831A", "T6835G", "A6839-", "A6840-", "A6841-", "A6842-", "A6843-", "T6844-", "A6880G", "G6894T", "A6937C", "-6951C", "-6952A", "T6958-", "A6959-", "A6960-", "T6961-", "A6962-", "T6964-", "A6965-", "-6993C", "-6994A", "-6995G", "-6996A", "-6997G", "-6998T", "-6999A", "-7000T", "-7001A", "-7002A", "-7003G", "-7005G", "-7006C", "C7008A", "A7026G", "G7060A", "A7133G", "C7134T", "A7135G", "G7147C", "A7152G", "T7153C", "A7155C", "C7156A", "-7162A", "-7164C", "-7165C", "G7166-", "A7167-", "A7169-", "C7170-", "C7171-", "G7197A", "T7233C", "T7243C", "C7250T", "G7275A", "C7313A", "T7325C", "A7339G", "G7456A", "A7532C", "G7552A", "A7590C", "T7630G", "G7633T", "A7641G", "A7672G", "G7673A", "C7688G", "A7689G", "A7690C", "A7700T", "C7747A", "G7754T", "G7773A", "T7825C", "T7852G", "T7912A", "C7921T", "G7976A", "G8017A", "G8019A", "A8032G", "C8033A", "T8097G", "C8103T", "G8116A", "C8120T", "T8153C", "T8171C", "G8194A", "A8196T", "A8222G", "G8264T", "T8279G", "C8293T", "T8321G", "T8322C", "G8349A", "G8354A", "G8357T", "A8364-", "G8365-", "A8370-", "G8373T", "T8375G", "A8386C", "A8405G", "A8407G", "A8409G", "C8411A", "C8412G", "C8413G", "T8414A", "C8415G", "C8471T", "A8490G", "-8492C", "C8514G", "C8552T", "T8591A", "C8651T", "C8655A", "A8656G", "C8684T", "G8787A", "T8831C", "A8844C", "T8855C", "C8913A", "G8915A", "A8922G", "G8955A", "C8960A", "C8992T", "A9023C", "G9035-", "T9036-", "G9037-", "G9038-", "C9039-", "T9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "C9133T"], "INT": ["S24N", "I31V", "N124S", "T125A", "N134S"], "RT-p51": ["K49R", "K174Q", "E207N", "K211R", "S251N", "P272A", "K311R", "L334P", "K366R", "E404D", "Y440F"], "RT-p66": ["K49R", "K174Q", "E207N", "K211R", "S251N", "P272A", "K311R", "L334P", "K366R", "E404D", "Y440F", "K530R"], "gp120": ["E4S", "N5K", "D21N", "T22A", "K37R", "I56M", "T57I", "N64P", "H77Q", "T104V", "-109N", "-112T", "-113G", "-114S", "-115T", "-123V", "-126M", "V153M", "P155S", "D157-", "N159D", "N160G", "S161D", "L237V", "K241G", "S246T", "I249T", "A253T", "E262D", "S278E", "R280G", "A288M", "D294E", "D297N", "R307G", "T308E", "N311G", "E312D", "L314S", "-318K", "-319T", "-322Q", "-324V", "S347I", "G361D", "S365N", "S366T", "-367S", "N369-", "-381E", "-382Y", "-383K", "-384G", "-385N", "K391R", "N414D", "T427V", "N433S", "N434T", "N437T", "E438-", "T439-", "R448K", "I460T", "R474K"], "gp41": ["L4M", "F8L", "K77Q", "N96T", "G109E", "E110D", "D113G", "V124I", "Q129G", "S133Y", "D148E", "A151S", "S157N", "G225R", "S239N", "L244I", "L265W", "A267V", "Y284H", "N298I", "I307V", "V321L", "C326G", "L340A"], "nef": ["G3S", "W5C", "S8L", "S9-", "E15A", "Q22R", "T23A", "P24G", "P25A", "L58V", "Q105R", "Y135F", "D149N", "I168L", "I194V", "D205N", "C206*"], "p17": ["M31I", "K62N", "T81A", "Q90R", "K95R", "I107L", "Q113K", "K122T", "S125N"], "p2": ["A7V"], "p24": ["S14A", "E75D", "S120N", "S225G"], "p6": ["T35L", "P49Q"], "rev": ["E11A", "R43K", "E57K", "T62D", "G90R", "T91I", "I102T", "G108A", "E116N"], "tat": ["K24N", "V29K", "G57S", "P60A"], "vif": ["K36R", "R41G", "V51T", "L59I", "D78A", "S116T", "Q127E", "I128L", "Q178R", "*193W"], "vpr": ["A19T", "N28V"], "vpu": ["P3A", "G16A", "F27I", "D73H"]}, "labels": {"aa": "INT: S24N, I31V, N124S, T125A, N134S; RT-p51: K49R, K174Q, E207N, K211R, S251N, P272A, K311R, L334P, K366R, E404D, Y440F; RT-p66: K49R, K174Q, E207N, K211R, S251N, P272A, K311R, L334P, K366R, E404D, Y440F, K530R; gp120: E4S, N5K, D21N, T22A, K37R, I56M, T57I, N64P, H77Q, T104V, -109N, -112T, -113G, -114S, -115T, -123V, -126M, V153M, P155S, D157-, N159D, N160G, S161D, L237V, K241G, S246T, I249T, A253T, E262D, S278E, R280G, A288M, D294E, D297N, R307G, T308E, N311G, E312D, L314S, -318K, -319T, -322Q, -324V, S347I, G361D, S365N, S366T, -367S, N369-, -381E, -382Y, -383K, -384G, -385N, K391R, N414D, T427V, N433S, N434T, N437T, E438-, T439-, R448K, I460T, R474K; gp41: L4M, F8L, K77Q, N96T, G109E, E110D, D113G, V124I, Q129G, S133Y, D148E, A151S, S157N, G225R, S239N, L244I, L265W, A267V, Y284H, N298I, I307V, V321L, C326G, L340A; nef: G3S, W5C, S8L, S9-, E15A, Q22R, T23A, P24G, P25A, L58V, Q105R, Y135F, D149N, I168L, I194V, D205N, C206*; p17: M31I, K62N, T81A, Q90R, K95R, I107L, Q113K, K122T, S125N; p2: A7V; p24: S14A, E75D, S120N, S225G; p6: T35L, P49Q; rev: E11A, R43K, E57K, T62D, G90R, T91I, I102T, G108A, E116N; tat: K24N, V29K, G57S, P60A; vif: K36R, R41G, V51T, L59I, D78A, S116T, Q127E, I128L, Q178R, *193W; vpr: A19T, N28V; vpu: P3A, G16A, F27I, D73H"}}}, {"name": "MH431770", "node_attrs": {"div": 0.16995, "accession": "MH431770", "clade_membership": {"value": "G"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "GZ8H3748.13"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "G378A", "C379A", "A519C", "T525A", "A529T", "C531T", "C540A", "G557A", "A569G", "G607A", "G608C", "A617G", "A620G", "A676G", "G683A", "A693G", "T698-", "A699-", "A700-", "G702A", "A704T", "A716G", "T718C", "A730T", "G740A", "C767T", "G771T", "A774T", "A776G", "C824T", "G941A", "T956A", "A1070G", "C1136A", "A1176T", "T1220C", "C1262A", "C1280T", "G1301A", "T1325C", "C1334T", "C1350A", "T1427C", "G1477A", "G1562A", "C1571A", "G1592A", "G1664A", "G1695C", "G1697A", "C1712A", "A1715G", "C1724T", "A1733G", "-1782A", "C1785T", "C1795T", "A1841G", "C1873T", "A1907G", "G1942A", "C1986T", "A2012G", "A2122C", "A2125G", "C2263T", "C2335T", "C2356T", "T2369C", "A2371T", "G2417A", "A2462G", "G2463A", "C2464T", "T2476C", "A2498G", "G2530A", "G2578A", "A2616G", "A2617G", "T2653C", "C2671T", "A2699G", "G2725A", "T2770C", "C2776T", "G2815A", "G2842A", "A2845C", "G2914A", "C2953T", "A3001G", "C3013T", "C3055T", "A3070G", "G3080A", "T3096A", "C3097A", "G3154A", "A3217G", "G3277A", "A3307G", "T3334G", "G3344A", "C3346T", "A3385G", "C3415T", "G3427A", "G3467A", "G3473A", "A3490G", "A3520G", "G3556A", "T3566C", "G3630A", "T3692C", "A3703G", "T3746C", "A3748G", "A3766G", "T3779C", "C3787T", "C3823T", "A4063G", "G4148A", "T4177C", "G4264A", "G4372A", "T4396A", "G4519A", "A4531G", "C4576T", "A4644G", "A4682T", "A4684G", "A4694G", "C4697T", "T4712C", "C4724T", "A4751G", "A4806C", "A4850C", "G4856A", "G4859A", "C4889A", "T4910C", "C4978A", "A5059G", "G5086A", "A5089T", "A5122G", "C5146T", "G5164A", "A5212C", "C5213A", "C5214T", "C5237T", "C5242T", "T5303C", "A5355C", "C5356T", "C5358A", "G5362A", "T5371G", "A5372C", "G5376A", "G5418A", "T5457C", "T5462C", "T5466C", "C5478T", "C5551T", "G5557A", "G5561A", "A5594G", "G5620C", "G5647A", "G5673A", "T5687A", "A5702G", "G5708A", "A5709G", "G5730A", "C5734A", "G5747C", "T5778C", "A5781G", "C5789A", "T5832C", "G5839A", "G5858A", "T5866G", "A5867C", "A5868C", "T5901C", "C5921A", "A5926G", "A5957G", "A6023G", "C6024A", "T6025G", "G6029A", "A6073G", "G6133A", "C6134T", "C6160T", "A6177G", "-6180C", "C6183A", "T6184G", "A6185T", "A6186C", "C6190T", "C6193T", "A6194G", "G6195C", "T6196A", "T6199C", "-6200A", "-6201A", "-6202C", "-6211A", "A6212C", "-6217G", "G6218T", "A6219G", "-6220A", "A6222C", "-6229G", "-6230C", "A6273G", "G6313A", "G6326A", "T6331G", "A6335G", "T6340C", "A6354C", "T6397C", "T6418C", "G6425A", "C6441T", "A6443C", "T6460A", "A6464G", "A6482G", "T6487C", "A6489C", "A6525G", "T6541C", "A6550G", "A6573G", "G6575A", "G6581T", "A6583G", "G6588A", "A6589G", "G6605A", "A6616G", "A6617G", "G6647C", "A6659T", "C6667T", "A6682G", "A6695T", "A6728C", "C6729A", "A6730T", "C6758T", "A6776T", "A6781G", "A6786C", "A6807-", "A6808-", "A6809-", "C6810-", "A6811-", "C6815A", "T6816C", "A6819G", "G6821C", "A6822T", "A6824C", "T6825A", "C6826A", "T6827G", "T6828A", "T6829G", "-6830G", "-6831T", "A6833C", "A6834T", "T6838C", "A6840C", "A6843G", "C6849T", "T6863A", "A6884G", "G6935A", "-6951G", "-6952C", "-6954T", "-6955G", "-6956C", "-6957T", "-6963A", "-6966A", "-6967T", "-6974A", "-6975C", "-6976T", "-6977G", "-6978T", "-6979T", "-6980G", "-6981A", "-6982T", "-6983A", "-6984C", "-6985C", "-6986A", "-6987A", "-6988C", "-6989A", "-6990A", "-6991C", "G7004-", "T7009A", "C7014T", "A7046C", "G7088C", "C7096A", "T7099A", "G7107T", "A7108T", "A7129G", "G7146A", "G7147T", "A7158C", "T7159G", "G7160A", "-7162T", "-7164A", "-7165T", "-7168C", "T7172G", "G7181T", "A7183G", "G7225A", "A7239G", "A7258G", "G7270A", "G7303A", "G7315T", "G7322T", "G7343A", "G7366A", "A7427G", "G7441A", "A7459G", "T7466C", "A7549G", "C7561T", "A7626T", "T7627G", "A7629G", "C7684T", "C7691G", "A7701C", "A7705G", "A7706C", "A7722T", "G7726A", "G7769A", "A7782G", "G7790A", "A7791G", "A7818G", "T7864C", "G7868A", "C7874T", "A7880C", "T7894C", "T7929C", "T7930C", "A7931C", "C7932T", "C7936A", "C7939A", "A7974G", "G7977A", "A7996C", "A7998C", "A8011C", "G8055A", "C8106T", "G8136T", "T8159G", "C8213T", "T8257A", "C8268T", "C8296T", "G8308A", "C8320G", "A8323G", "G8330T", "C8336T", "G8365A", "-8366G", "-8367A", "-8368G", "-8369C", "-8371A", "-8372G", "G8377A", "G8398A", "A8402G", "T8444A", "A8469C", "G8487T", "-8492T", "C8494A", "G8531A", "T8546C", "G8590A", "T8594C", "T8636A", "A8643G", "A8660G", "T8690C", "A8701T", "C8740T", "T8746A", "C8747T", "A8774G", "C8790A", "G8808A", "C8809T", "A8844G", "T8860C", "A8864G", "G8868A", "A8909G", "G8917A", "C8921T", "A8922C", "A8924T", "C8951T", "C9047T", "T9073C", "C9097T"], "INT": ["D207E"], "RT-p51": ["V108I", "S123D", "I135V", "K174R", "I202V", "E207D", "E250D", "V329I", "L334Q", "D413E", "V417I"], "RT-p66": ["V108I", "S123D", "I135V", "K174R", "I202V", "E207D", "E250D", "V329I", "L334Q", "D413E", "V417I", "V458I", "D460N", "S491P", "R512K"], "gp120": ["A2T", "N5P", "V16A", "P23T", "T35A", "T57E", "E59K", "N64T", "D105N", "K107D", "-109A", "-110T", "-124E", "-126L", "K140R", "V153I", "N159K", "N160T", "S161G", "S162N", "N167T", "A191T", "A196V", "I197L", "D202E", "N204D", "T210A", "K212T", "K224R", "E240G", "V243L", "R245K", "D251N", "I255V", "E265Q", "T269S", "I281F", "T292H", "H302Y", "T308S", "N311T", "L321T", "-322R", "E323L", "-324Q", "F325E", "-326V", "-327L", "K329T", "N330S", "T332I", "S337T", "T344A", "G361K", "S366L", "-367L", "-368N", "-370N", "-371T", "-372V", "-373D", "-374T", "-378N", "-379N", "-380T", "T387I", "M398L", "A412P", "N414E", "R418I", "N435T", "E436N", "E438D", "F440V", "G443W", "K462R"], "gp41": ["V7F", "A14T", "S42G", "Y108L", "Q130E", "S133T", "I135L", "N140I", "A156T", "N160S", "D163S", "K172R", "A189T", "L191F", "I193L", "L209P", "T210L", "H211Q", "H212Q", "E224G", "G225E", "R231S", "D232A", "S251N", "A268V", "G278S", "W286G", "L304F", "A322V", "A343S"], "nef": ["S8K", "-10K", "-11V", "G12E", "R19K", "I20M", "E28A", "G29A", "I43L", "A49S", "A50T", "T51N", "G83D", "D98E", "I101V", "Y120F", "T133I", "P150T", "A156I", "I168V", "M173T", "A176T", "R192K", "I194L"], "p17": ["V7I", "A15K", "K62Q", "L64M", "Q65L", "P66S", "Q69K", "R91N", "E114G", "T115A", "T120A", "S121-", "K122-", "G123-", "N124-", "V128A", "Y132F"], "p2": ["A10S"], "p24": ["I15L", "Q86P", "S149C", "P207T"], "p6": ["E6Q", "P36S", "A39V"], "p7": ["S4N"], "pro": ["I15V", "N37D", "P63L", "I72V"], "rev": ["V16I", "Y28P", "P30T", "P31T", "I55L", "V104G", "G108V"], "tat": ["V29A", "P59S", "G61S", "S62N", "L74P", "P75S", "T76N", "T77N"], "vif": ["T20A", "K33R", "T74P", "E88D", "D101E", "P131H", "K158R", "R167K", "K168I", "K179R", "P187L"], "vpr": ["R36S", "P37I", "H45Y", "T84L", "P85T", "R86Q", "V89G", "D91N"], "vpu": ["E5Q", "V14I", "F27Y", "K32R", "R34K", "L43I", "R47T", "T61K", "V78I"]}, "labels": {"aa": "INT: D207E; RT-p51: V108I, S123D, I135V, K174R, I202V, E207D, E250D, V329I, L334Q, D413E, V417I; RT-p66: V108I, S123D, I135V, K174R, I202V, E207D, E250D, V329I, L334Q, D413E, V417I, V458I, D460N, S491P, R512K; gp120: A2T, N5P, V16A, P23T, T35A, T57E, E59K, N64T, D105N, K107D, -109A, -110T, -124E, -126L, K140R, V153I, N159K, N160T, S161G, S162N, N167T, A191T, A196V, I197L, D202E, N204D, T210A, K212T, K224R, E240G, V243L, R245K, D251N, I255V, E265Q, T269S, I281F, T292H, H302Y, T308S, N311T, L321T, -322R, E323L, -324Q, F325E, -326V, -327L, K329T, N330S, T332I, S337T, T344A, G361K, S366L, -367L, -368N, -370N, -371T, -372V, -373D, -374T, -378N, -379N, -380T, T387I, M398L, A412P, N414E, R418I, N435T, E436N, E438D, F440V, G443W, K462R; gp41: V7F, A14T, S42G, Y108L, Q130E, S133T, I135L, N140I, A156T, N160S, D163S, K172R, A189T, L191F, I193L, L209P, T210L, H211Q, H212Q, E224G, G225E, R231S, D232A, S251N, A268V, G278S, W286G, L304F, A322V, A343S; nef: S8K, -10K, -11V, G12E, R19K, I20M, E28A, G29A, I43L, A49S, A50T, T51N, G83D, D98E, I101V, Y120F, T133I, P150T, A156I, I168V, M173T, A176T, R192K, I194L; p17: V7I, A15K, K62Q, L64M, Q65L, P66S, Q69K, R91N, E114G, T115A, T120A, S121-, K122-, G123-, N124-, V128A, Y132F; p2: A10S; p24: I15L, Q86P, S149C, P207T; p6: E6Q, P36S, A39V; p7: S4N; pro: I15V, N37D, P63L, I72V; rev: V16I, Y28P, P30T, P31T, I55L, V104G, G108V; tat: V29A, P59S, G61S, S62N, L74P, P75S, T76N, T77N; vif: T20A, K33R, T74P, E88D, D101E, P131H, K158R, R167K, K168I, K179R, P187L; vpr: R36S, P37I, H45Y, T84L, P85T, R86Q, V89G, D91N; vpu: E5Q, V14I, F27Y, K32R, R34K, L43I, R47T, T61K, V78I"}}}]}, {"name": "G_NODE_0000026", "node_attrs": {"div": 0.11908999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C379A", "C496G", "G557A", "-695A", "-696G", "T707-", "C1005G", "G1256A", "C1826T", "G2002A", "G2389A", "T2503C", "G2530A", "C3097T", "G3378A", "G3775A", "G4306A", "G4735A", "C5356T", "T5397G", "T5866G", "T5911C", "C5974A", "C6024G", "C6045A", "-6173A", "-6180A", "C6183G", "-6215A", "G6227-", "A6228-", "A6320C", "G6436T", "T6500A", "A6789G", "T6794A", "-6955G", "-6956T", "-6957T", "-6966C", "-6986A", "-6987A", "-6989A", "-7003T", "-7005A", "A7015G", "G7366A", "T7392C", "A7666C", "C7801A", "T7843G", "G8114T", "T8171G", "T8374-", "G8387A", "A8584T", "T8711C"], "gp120": ["T57S", "I156L", "S216T", "Q315K", "-368F", "-378N", "-384D", "N437-"], "gp41": ["V30A", "E121D", "N166K", "V271L"], "nef": ["Y81F"], "p17": ["A54G", "T115A"], "p24": ["P92A"], "rev": ["S89I"], "tat": ["N7K"], "vif": ["R50K"], "vpr": ["T84L"]}, "labels": {"aa": "gp120: T57S, I156L, S216T, Q315K, -368F, -378N, -384D, N437-; gp41: V30A, E121D, N166K, V271L; nef: Y81F; p17: A54G, T115A; p24: P92A; rev: S89I; tat: N7K; vif: R50K; vpr: T84L"}}, "children": [{"name": "G_NODE_0000027", "node_attrs": {"div": 0.12552, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "C767T", "A1388G", "G1449A", "G1477A", "A1670G", "A1733G", "G2317A", "G2629A", "G2847A", "C2857T", "C4534T", "A4968T", "G5155A", "C5213A", "C5214T", "A5587G", "A5781G", "T5787C", "C5792A", "A5793G", "A5794G", "C5795A", "C5797T", "T5799G", "T5801C", "G5802A", "G5803A", "C5805A", "A5806C", "G5808T", "G5809-", "T5810-", "-5813T", "-5814G", "-5815G", "-5816A", "-5818A", "-5819T", "-5820G", "-5821G", "-5823G", "-5824G", "C5834T", "G5858A", "A6194T", "-6206A", "-6207A", "G6292T", "G6323A", "G6326A", "A6574C", "G6575A", "G6611A", "A6617G", "G6790A", "G6793A", "C6810G", "A6813C", "C6815G", "T6816C", "A6817T", "T6825A", "A6905G", "-6985A", "-6988T", "-6990A", "G7147A", "A7152G", "-7164C", "-7165A", "-7168A", "G7456A", "G7628A", "C7702T", "G7754T", "C7770A", "A7771C", "G7790A", "A7791G", "T8290C", "G8349A", "G8350A", "A8370-", "G8373-", "T8375-", "G8376-", "G8377-", "A8378-", "A8386C", "A8604G", "T8746A", "A9023C"], "RT-p51": ["M178I"], "RT-p66": ["M178I"], "gp120": ["D157N", "E240D", "A253T", "I255V", "R351G", "-371T"], "gp41": ["G109N", "A151S", "A156D", "D163S", "V290G"], "nef": ["G3N", "S9-", "G12-", "A50R", "S88G"], "p17": ["A15K"], "p7": ["S4N"], "tat": ["N12K", "K71E"], "vif": ["I128L", "S190N", "*193W"], "vpr": ["E25D", "P37I"], "vpu": ["T66K", "P76L"]}, "labels": {"aa": "RT-p51: M178I; RT-p66: M178I; gp120: D157N, E240D, A253T, I255V, R351G, -371T; gp41: G109N, A151S, A156D, D163S, V290G; nef: G3N, S9-, G12-, A50R, S88G; p17: A15K; p7: S4N; tat: N12K, K71E; vif: I128L, S190N, *193W; vpr: E25D, P37I; vpu: T66K, P76L"}}, "children": [{"name": "MK254637", "node_attrs": {"div": 0.17797, "accession": "MK254637", "clade_membership": {"value": "G"}, "country": {"value": "CN"}, "date": {"value": 2016.0}, "Strain_name": {"value": "10818"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["T172A", "T176G", "A180G", "T182A", "G183T", "C185T", "G186T", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "G196-", "G197-", "A198-", "C199-", "T200-", "T201-", "G202-", "A203-", "A204-", "A205-", "G206-", "C207-", "G208-", "A209-", "A210-", "A211-", "G212-", "T213-", "T214-", "A215-", "A216-", "C218-", "C219-", "A286G", "A303T", "-304T", "-305T", "G354A", "A387G", "A388G", "G424A", "A426C", "A437G", "G461C", "C482T", "T503C", "A515T", "A516T", "A519C", "G542A", "T571A", "A584T", "A606G", "A613G", "A654T", "C665A", "A676C", "A692G", "A693G", "-697C", "T698A", "A700C", "G702-", "G703-", "A704-", "A705-", "A706-", "C722T", "T739C", "G755A", "G771T", "A818G", "G821A", "C824T", "C827T", "T830C", "A839G", "C893T", "G914A", "G1016A", "A1133C", "T1143C", "A1157G", "T1220C", "A1277G", "C1280T", "T1310C", "G1313A", "C1334T", "A1355G", "T1421G", "G1442A", "T1446A", "G1450A", "A1496G", "A1529G", "C1536A", "A1544G", "A1588G", "G1619A", "A1656C", "G1673A", "T1676C", "T1681C", "A1687C", "G1734A", "G1760A", "G1766A", "C1767T", "C1768T", "G1775A", "-1782C", "A1784T", "C1785G", "T1791A", "T1826A", "A1828G", "A1841G", "G1845A", "C1986T", "G1999A", "A2012C", "T2013A", "A2042G", "A2113C", "A2119C", "A2128G", "G2155A", "C2211A", "A2223G", "G2230A", "A2254G", "C2263T", "C2296T", "G2332A", "C2335T", "G2362A", "A2404G", "A2406G", "G2411A", "T2434C", "G2447A", "A2455G", "G2456C", "A2462G", "G2463A", "T2488C", "T2499C", "G2518A", "T2520C", "T2542C", "A2551G", "A2579G", "G2580A", "A2592G", "A2612G", "A2617C", "T2668A", "G2683A", "G2704A", "G2707A", "G2725A", "T2737A", "T2749G", "G2761A", "A2788G", "G2794A", "A2821G", "A2845G", "A2875G", "C2885T", "G2921A", "C2953T", "A2959C", "G2998A", "G3004A", "G3019A", "A3037G", "C3133T", "A3151G", "G3154A", "C3178T", "A3190G", "C3207T", "C3222G", "C3223T", "G3277A", "A3280G", "G3293T", "T3308C", "T3349C", "G3367A", "A3400G", "G3439A", "A3477G", "A3511T", "G3553A", "A3619G", "A3651G", "A3682C", "G3685A", "G3694A", "G3834A", "C4021A", "G4036A", "T4135C", "T4144C", "G4148A", "T4165C", "C4180A", "A4213G", "G4228A", "A4231G", "A4249G", "G4354A", "A4420G", "A4455T", "A4498G", "G4573A", "C4679A", "G4695A", "G4696A", "C4697T", "C4715T", "C4724T", "A4739G", "T4769C", "A4774T", "G4782A", "A4787G", "T4957C", "A4976G", "T5018C", "G5030A", "A5049G", "A5058C", "A5090G", "T5091C", "A5119G", "A5123G", "G5131C", "A5148T", "A5179T", "T5197C", "T5203C", "A5212G", "A5236G", "T5275C", "G5276C", "A5277T", "A5296G", "T5327C", "C5351T", "T5354C", "T5356C", "T5357C", "C5359G", "T5371C", "A5396G", "T5412A", "T5415C", "G5448T", "G5463A", "G5493A", "C5496A", "C5508A", "C5511T", "C5552A", "G5557A", "A5563C", "A5574G", "A5576C", "A5607G", "C5611A", "A5613T", "C5614G", "C5615A", "G5620C", "A5622G", "T5626A", "C5627G", "G5653A", "A5656T", "C5664T", "T5686C", "G5729A", "T5739G", "A5748T", "G5775A", "T5778C", "-5817T", "-5822G", "T5851G", "C5859G", "C5860T", "A5863C", "G5864T", "A5865C", "G5866A", "T5917G", "C5958A", "G5972A", "A5995T", "A6066C", "T6096C", "T6151C", "T6155C", "G6170T", "T6171C", "A6172T", "-6175T", "A6176G", "T6178G", "A6179G", "A6180G", "T6181A", "G6183A", "C6190A", "A6192C", "G6195C", "-6200G", "-6201G", "-6202G", "-6203G", "-6204G", "-6205A", "A6208C", "T6210A", "-6211C", "T6213C", "T6216C", "-6217C", "A6219T", "-6220T", "A6223G", "-6227C", "-6228A", "-6229A", "-6230C", "A6234C", "A6273G", "G6274A", "G6280A", "A6285C", "A6286C", "C6317T", "T6337A", "G6339A", "T6358C", "G6379A", "T6385C", "A6482C", "G6588A", "T6643C", "G6647A", "T6652C", "A6659G", "A6669G", "A6684C", "A6691G", "G6716A", "G6718A", "A6723T", "A6734G", "T6735A", "G6767A", "A6780G", "T6787G", "G6789A", "T6792C", "A6796G", "A6798G", "G6799A", "A6801G", "A6811T", "A6819G", "C6826A", "-6830T", "-6831G", "-6832G", "T6835-", "A6836-", "C6862T", "T6863G", "A6937G", "-6951C", "-6952A", "-6954G", "T6956C", "T6961C", "-6963G", "-6967A", "-6968G", "-6969A", "-6970T", "-6971A", "-6972A", "-6973T", "-6974A", "-6975G", "-6976T", "-6977A", "-6978C", "-6979A", "-6980G", "-6984C", "-7006C", "T7024C", "G7027A", "C7087T", "G7107T", "A7151G", "A7154G", "A7155G", "C7156A", "-7162G", "G7225A", "A7245C", "A7246G", "C7266A", "A7277C", "C7289G", "G7303A", "A7372G", "A7373C", "T7386C", "C7411T", "G7513T", "G7552A", "T7555C", "C7574A", "C7597T", "T7622A", "A7626T", "G7668A", "C7688G", "A7690G", "A7692T", "C7699T", "A7701G", "C7712G", "A7722C", "G7753A", "A7761C", "T7796A", "G7843A", "T7865A", "T7888G", "A7931C", "C7950T", "C8005G", "A8011C", "G8017C", "G8050A", "C8106T", "G8144A", "C8146A", "T8172G", "A8222G", "T8235C", "T8281C", "C8293T", "T8321C", "A8323T", "G8330A", "C8331T", "A8360T", "-8366C", "A8390G", "A8400C", "A8405G", "A8407G", "A8426T", "G8436C", "A8490C", "-8492G", "C8499T", "A8503C", "C8526G", "C8534G", "A8564C", "T8582C", "G8588A", "G8590A", "A8630G", "A8643G", "T8645G", "A8657G", "C8661G", "A8662C", "A8663T", "C8675T", "C8676T", "G8682A", "A8701T", "C8720T", "A8784C", "A8799G", "G8808A", "A8812C", "G8818A", "A8829T", "T8847A", "G8848A", "G8871C", "C8873T", "A8874G", "A8909G", "A8922G", "C8948T", "A8954G", "G8955A", "C8993T", "T8994G", "G9005A", "C9012T", "C9014T", "T9029C", "C9097T", "T9108G", "T9109C", "G9132A", "A9134G", "G9135-", "A9159-"], "INT": ["R20K", "Y227F"], "RT-p51": ["E6D", "T39K", "K43R", "K104R", "V106I", "V118I", "D121H", "S123D", "I135T", "I142T", "S162D", "K166R", "T173A", "K174N", "F214L", "D218E", "S251N", "V276I", "A371V", "A376G", "V400L", "Y405H"], "RT-p66": ["E6D", "T39K", "K43R", "K104R", "V106I", "V118I", "D121H", "S123D", "I135T", "I142T", "S162D", "K166R", "T173A", "K174N", "F214L", "D218E", "S251N", "V276I", "A371V", "A376G", "V400L", "Y405H", "K461R", "N519S", "E529D"], "gp120": ["A2S", "E4S", "D21E", "T35N", "V40I", "N71T", "I81T", "D105N", "V106L", "K107T", "K127-", "N128-", "K140R", "E144A", "P155S", "S161R", "S162N", "T210P", "R245K", "E265K", "T269A", "N272S", "K277T", "I279M", "A288T", "Y290F", "D294E", "V305I", "K309R", "N311K", "M313T", "L314M", "K315R", "K316R", "N328-", "S337A", "S365N", "S366T", "-367W", "F368L", "-370S", "-372D", "-379S", "-380T", "-381A", "-382N", "-383N", "-385T", "R418I", "N433G", "N434G", "-437S", "K464T", "T471N", "Q479E"], "gp41": ["I24L", "V28A", "L91I", "S107T", "Y108F", "R122K", "Q129E", "Q130L", "N140T", "D153A", "S165T", "F188I", "N195K", "T210P", "P216L", "A268V", "G281R", "I307V", "V311A", "A343I"], "nef": ["E15A", "I20L", "Q22R", "E28D", "A32P", "R50Q", "P53S", "D54A", "Q62E", "D64E", "G83D", "I101V", "Q107A", "V114I", "Y120F", "M148L", "I153V", "A156T", "N157T", "G159E", "S163C", "C169N", "D177H", "R178G", "I194V", "D205N"], "p1": ["N9H"], "p17": ["V7I", "K18G", "R30K", "M31L", "E42D", "M61L", "K62Q", "F79Y", "R91G", "E93G", "I107L", "E114A", "T120A", "S121A", "K122T", "G123-", "N124-"], "p2": ["S8T", "G9N", "A10S"], "p24": ["V3A", "E75D", "Q86P"], "p6": ["L1P", "N3T", "E19K", "P30L", "T35E", "L38I", "*50W"], "p7": ["L24I", "K41R"], "pro": ["L10M", "I15V", "G16E", "P63L", "I72Q", "I82V"], "rev": ["L13I", "K20R", "I21L", "Y28S", "H53D", "I55L", "E57Q", "S67P", "A68T", "L73F", "G99E", "P100T"], "tat": ["K7R", "K24N", "N40K", "P59H", "G61S", "K63Q", "N67T", "L74F", "P81S"], "vif": ["G37N", "K63I", "V66I", "I124T", "T155A", "K158Q", "Q178R", "G182A", "T188S"], "vpr": ["N7D", "Y15F", "E58L", "L84T", "P85R", "V89A"], "vpu": ["Q2N", "P3E", "E5Q", "G16S", "I17L", "F27L", "R41K", "D44E", "R47S", "V72G", "L82V"]}, "labels": {"aa": "INT: R20K, Y227F; RT-p51: E6D, T39K, K43R, K104R, V106I, V118I, D121H, S123D, I135T, I142T, S162D, K166R, T173A, K174N, F214L, D218E, S251N, V276I, A371V, A376G, V400L, Y405H; RT-p66: E6D, T39K, K43R, K104R, V106I, V118I, D121H, S123D, I135T, I142T, S162D, K166R, T173A, K174N, F214L, D218E, S251N, V276I, A371V, A376G, V400L, Y405H, K461R, N519S, E529D; gp120: A2S, E4S, D21E, T35N, V40I, N71T, I81T, D105N, V106L, K107T, K127-, N128-, K140R, E144A, P155S, S161R, S162N, T210P, R245K, E265K, T269A, N272S, K277T, I279M, A288T, Y290F, D294E, V305I, K309R, N311K, M313T, L314M, K315R, K316R, N328-, S337A, S365N, S366T, -367W, F368L, -370S, -372D, -379S, -380T, -381A, -382N, -383N, -385T, R418I, N433G, N434G, -437S, K464T, T471N, Q479E; gp41: I24L, V28A, L91I, S107T, Y108F, R122K, Q129E, Q130L, N140T, D153A, S165T, F188I, N195K, T210P, P216L, A268V, G281R, I307V, V311A, A343I; nef: E15A, I20L, Q22R, E28D, A32P, R50Q, P53S, D54A, Q62E, D64E, G83D, I101V, Q107A, V114I, Y120F, M148L, I153V, A156T, N157T, G159E, S163C, C169N, D177H, R178G, I194V, D205N; p1: N9H; p17: V7I, K18G, R30K, M31L, E42D, M61L, K62Q, F79Y, R91G, E93G, I107L, E114A, T120A, S121A, K122T, G123-, N124-; p2: S8T, G9N, A10S; p24: V3A, E75D, Q86P; p6: L1P, N3T, E19K, P30L, T35E, L38I, *50W; p7: L24I, K41R; pro: L10M, I15V, G16E, P63L, I72Q, I82V; rev: L13I, K20R, I21L, Y28S, H53D, I55L, E57Q, S67P, A68T, L73F, G99E, P100T; tat: K7R, K24N, N40K, P59H, G61S, K63Q, N67T, L74F, P81S; vif: G37N, K63I, V66I, I124T, T155A, K158Q, Q178R, G182A, T188S; vpr: N7D, Y15F, E58L, L84T, P85R, V89A; vpu: Q2N, P3E, E5Q, G16S, I17L, F27L, R41K, D44E, R47S, V72G, L82V"}}}, {"name": "KX389645", "node_attrs": {"div": 0.16665, "accession": "KX389645", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11NG050489"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A359G", "C362T", "A374G", "G461A", "G481A", "A492T", "G496C", "A520T", "C528A", "C539T", "A576G", "A585G", "C586T", "G645A", "G647A", "A650G", "A654C", "T655A", "A656G", "G662A", "A676G", "C679T", "G696A", "-697G", "G703A", "-707C", "G709A", "C902T", "T956A", "G977A", "C978G", "C988A", "A1002G", "G1064A", "G1067A", "A1077G", "C1137T", "G1142A", "T1271G", "A1278G", "A1279G", "C1295A", "T1325C", "G1394A", "C1409T", "G1455A", "A1474G", "G1498A", "A1580G", "C1610A", "A1642G", "C1692T", "C1706T", "G1713C", "C1714T", "A1735G", "G1743A", "-1782A", "C1785T", "T1790C", "T1830C", "A1907G", "A1990G", "A2002G", "A2069G", "T2077A", "G2134A", "G2182A", "T2206C", "G2224A", "C2356T", "G2428A", "G2459A", "C2464T", "T2467C", "A2470G", "T2521C", "G2539A", "C2596T", "G2632A", "A2665C", "C2671T", "C2720T", "C2723T", "A2818G", "A2846G", "C2909G", "A2932C", "A2956G", "C2975A", "T2996C", "A3058C", "G3080A", "T3096C", "T3097C", "A3162G", "T3170G", "T3181C", "A3230G", "A3283G", "T3310C", "G3316A", "C3319T", "G3340A", "A3361G", "G3379A", "C3399T", "G3427A", "G3467A", "C3475T", "A3484G", "A3490G", "A3491G", "T3535A", "A3562G", "C3610T", "A3655G", "C3665G", "A3718C", "G3756A", "A3766G", "A3805G", "A3866G", "G3886A", "A3900G", "A3944G", "A4063G", "A4076T", "A4093T", "G4109A", "A4111G", "C4141T", "A4145G", "A4146G", "A4175G", "T4177C", "C4182A", "A4186T", "T4198C", "G4264A", "C4381T", "T4396G", "T4444C", "T4537C", "A4555G", "A4558G", "A4564G", "C4576T", "G4636A", "A4693G", "C4697A", "G4727A", "A4735G", "G4764A", "G4765A", "G4767A", "A4775G", "C4776T", "G4786C", "G4861A", "C4902T", "T4991C", "G5086A", "A5179C", "G5225A", "A5282C", "G5330A", "C5333T", "A5345G", "A5355C", "C5358G", "G5362A", "G5363A", "G5376A", "T5412G", "G5418A", "T5466C", "G5482A", "T5484G", "A5534G", "C5551T", "C5554T", "A5601T", "A5621C", "T5626G", "G5629T", "G5730C", "-5817C", "-5822T", "T5832C", "T5844G", "T5861G", "C5869A", "C5911G", "C5989T", "G6024A", "A6076T", "G6121A", "T6154C", "C6165G", "G6170A", "A6172G", "A6174C", "-6175A", "T6178C", "T6184G", "A6186C", "T6187A", "C6193T", "-6205G", "A6209T", "-6211G", "-6217G", "A6223T", "-6227A", "-6228T", "-6229C", "-6230T", "A6234G", "G6240A", "A6253G", "A6263G", "C6298T", "C6318A", "C6320A", "T6322G", "A6352T", "G6362A", "A6406G", "T6409C", "T6454C", "G6456A", "G6457T", "T6460C", "C6483A", "A6484C", "A6538C", "T6545C", "A6577G", "T6586C", "A6599T", "G6605A", "A6606G", "A6640C", "A6654C", "C6660T", "C6697T", "T6733G", "A6776G", "A6781C", "A6786C", "T6787A", "G6788A", "A6794T", "C6797G", "A6808G", "A6811C", "A6822G", "A6824C", "C6826T", "T6827C", "T6829A", "-6830C", "-6831A", "-6832A", "A6833T", "T6835A", "T6838G", "A6839G", "T6844G", "A6854G", "T6860C", "A6868T", "A6900C", "A6937C", "A6948T", "T6949G", "-6951G", "-6952C", "-6954T", "-6963C", "T6964A", "-6991T", "-6992A", "-6993C", "-6994A", "-6995T", "-6996C", "-6997A", "-6998G", "-6999A", "-7000T", "-7001A", "-7002A", "A7005G", "-7006G", "C7008A", "G7015A", "T7105C", "T7150C", "T7153A", "A7161G", "-7162A", "C7170T", "A7256G", "A7268C", "A7269C", "G7275A", "G7315A", "T7325C", "C7328T", "T7330C", "T7462C", "G7517C", "A7532C", "G7534A", "A7553C", "G7640A", "G7677A", "C7712A", "A7713T", "G7717A", "A7761G", "C7762A", "A7763G", "T7775C", "A7801G", "T7808C", "A7817C", "T7968C", "G7995A", "A8006G", "T8008G", "A8014G", "C8047T", "T8065C", "G8098A", "C8167T", "T8172A", "A8184G", "T8210C", "T8218C", "C8268T", "A8273G", "T8279G", "G8308A", "A8348G", "A8363G", "-8366T", "G8385A", "A8396G", "A8402G", "A8409T", "C8411T", "C8413A", "T8414A", "C8415G", "A8425C", "T8450C", "A8491G", "-8492A", "A8522G", "G8531T", "C8534T", "G8537T", "G8561A", "T8568C", "G8570A", "A8573G", "A8576C", "G8579A", "G8590C", "T8591A", "T8594A", "C8640T", "C8655A", "C8666A", "A8688C", "A8693G", "A8708T", "T8766C", "G8767C", "C8771T", "C8810T", "G8885A", "C8907T", "C9078T", "A9099G", "A9151T"], "INT": ["I31V", "K42R", "S57G", "I101L", "V112M", "N124G", "T125A", "N134D", "T136K", "Q137H", "D207E"], "RT-p51": ["E122K", "E207D", "S251D", "P272A", "P294T", "V329I", "L334P", "K356R", "S359A", "S379G", "P435L"], "RT-p66": ["E122K", "E207D", "S251D", "P272A", "P294T", "V329I", "L334P", "K356R", "S359A", "S379G", "P435L", "V458I", "I466V", "H480Q", "Q524E", "S554N"], "gp120": ["A2T", "S3A", "N5K", "D19E", "S57N", "E74D", "-111N", "-125E", "-126I", "K127L", "C129Y", "I133M", "I137V", "P155Q", "L156M", "S161D", "V170I", "R201N", "T210N", "I249F", "D251S", "E262D", "N267T", "T269I", "T308A", "K309N", "N311T", "E312R", "M313I", "K316V", "K329E", "N330K", "N334D", "S336P", "N349T", "S365M", "-367L", "-370T", "-379N", "-380E", "-381T", "-382T", "-383S", "-385N", "E436G", "-437T", "T439I", "I468V", "K472P", "R474K"], "gp41": ["F8L", "L9F", "V72L", "K77Q", "I84L", "D113N", "S125N", "S133N", "E137I", "D153G", "K154E", "W169R", "K172Q", "I222T", "R231K", "I235V", "G290E", "Q294R", "A322V", "R324G", "C326G"], "nef": ["E15T", "I20M", "E28A", "E63D", "M79I", "G83A", "Q105K", "D108E", "N116H", "C142P"], "p1": ["K4R"], "p17": ["G49D", "T53S", "G54A", "K62I", "Q65K", "T81A", "T84V", "V104I", "K110S", "E114K", "A115N", "Q116S", "K117Q", "G123E", "S125N"], "p2": ["G9S", "A11S", "A12T"], "p24": ["S14A", "L83V", "I91V", "T116A", "D180E", "N183G"], "p6": ["A12L", "E19G", "A22T", "P36S", "S51P"], "p7": ["K3R", "R11K", "D48E"], "pro": ["V11A", "N37D", "I64M", "T91A"], "rev": ["S7G", "H53R", "S54A", "S56G", "D84N", "P107S"], "tat": ["V36M", "K53R", "P59S", "P60S", "S87P"], "vif": ["R17K", "K36R", "K50R", "G60K", "D61N", "R67T", "R92K", "R167K"], "vpr": ["G41S", "I60L", "P85A", "R86Q", "D91N"], "vpu": ["E5A", "S7A", "A8S", "R41S"]}, "labels": {"aa": "INT: I31V, K42R, S57G, I101L, V112M, N124G, T125A, N134D, T136K, Q137H, D207E; RT-p51: E122K, E207D, S251D, P272A, P294T, V329I, L334P, K356R, S359A, S379G, P435L; RT-p66: E122K, E207D, S251D, P272A, P294T, V329I, L334P, K356R, S359A, S379G, P435L, V458I, I466V, H480Q, Q524E, S554N; gp120: A2T, S3A, N5K, D19E, S57N, E74D, -111N, -125E, -126I, K127L, C129Y, I133M, I137V, P155Q, L156M, S161D, V170I, R201N, T210N, I249F, D251S, E262D, N267T, T269I, T308A, K309N, N311T, E312R, M313I, K316V, K329E, N330K, N334D, S336P, N349T, S365M, -367L, -370T, -379N, -380E, -381T, -382T, -383S, -385N, E436G, -437T, T439I, I468V, K472P, R474K; gp41: F8L, L9F, V72L, K77Q, I84L, D113N, S125N, S133N, E137I, D153G, K154E, W169R, K172Q, I222T, R231K, I235V, G290E, Q294R, A322V, R324G, C326G; nef: E15T, I20M, E28A, E63D, M79I, G83A, Q105K, D108E, N116H, C142P; p1: K4R; p17: G49D, T53S, G54A, K62I, Q65K, T81A, T84V, V104I, K110S, E114K, A115N, Q116S, K117Q, G123E, S125N; p2: G9S, A11S, A12T; p24: S14A, L83V, I91V, T116A, D180E, N183G; p6: A12L, E19G, A22T, P36S, S51P; p7: K3R, R11K, D48E; pro: V11A, N37D, I64M, T91A; rev: S7G, H53R, S54A, S56G, D84N, P107S; tat: V36M, K53R, P59S, P60S, S87P; vif: R17K, K36R, K50R, G60K, D61N, R67T, R92K, R167K; vpr: G41S, I60L, P85A, R86Q, D91N; vpu: E5A, S7A, A8S, R41S"}}}]}, {"name": "G_NODE_0000028", "node_attrs": {"div": 0.12092999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C537A", "C665T", "G1839A", "T2716A", "A5186C", "-5811G", "T5832G", "A6167G", "C6189A", "A6807C", "T6838C", "-7001A", "-7002A", "G7343A", "T7630G", "G8030T", "-8371T", "C8440T"], "gp120": ["-109N", "E312G"], "gp41": ["A14T", "A243S"], "nef": ["A33V", "Y135F"], "p17": ["L68I"], "pro": ["R14K"], "vpr": ["N28H"]}, "labels": {"aa": "gp120: -109N, E312G; gp41: A14T, A243S; nef: A33V, Y135F; p17: L68I; pro: R14K; vpr: N28H"}}, "children": [{"name": "DQ168573", "node_attrs": {"div": 0.15688, "accession": "DQ168573", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2001.0}, "Strain_name": {"value": "PL0567"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "T396C", "T525C", "A533G", "A558C", "A611G", "A613G", "C636G", "G642A", "G662A", "A663G", "A664G", "C688A", "A693G", "-697C", "T698C", "A700C", "G703T", "A705-", "A706-", "A708-", "G709-", "C710-", "A711-", "G712-", "C713-", "C714-", "A715-", "A716-", "G717-", "T718-", "T719-", "A720-", "G755A", "A866G", "A878G", "G908A", "G914A", "T944C", "C978T", "A980G", "C987A", "A1019G", "C1061T", "A1077G", "C1094T", "T1181C", "A1192G", "T1271G", "A1279C", "A1337G", "A1418G", "T1422C", "T1451C", "G1472A", "C1478T", "G1562A", "A1567G", "G1592A", "C1655T", "A1656C", "C1658A", "C1680A", "T1722C", "C1768T", "G1775A", "A1776-", "A1777-", "G1778-", "G1779-", "A1780-", "A1781-", "C1783-", "A1784-", "C1795T", "A1819G", "C1825A", "C1831T", "A1990G", "A2020G", "T2080C", "A2178G", "G2182A", "A2197G", "C2296T", "T2383C", "C2386T", "T2434C", "G2456C", "C2485T", "C2511A", "G2578A", "C2605T", "C2638T", "G2660A", "C2671T", "G2761A", "A2788G", "G2815A", "C2822G", "C2839T", "A2846G", "G2847A", "T2899C", "G2902A", "C2909T", "G2926A", "A2929G", "A2959C", "C2975T", "A2994C", "G3004A", "G3080A", "C3178T", "G3221T", "G3229A", "C3394T", "A3414T", "A3487G", "A3508T", "A3547G", "G3553A", "A3601C", "A3709C", "T3757A", "A3795G", "G3825A", "G3891A", "A3985G", "G4060A", "A4076T", "G4092C", "C4149T", "C4180T", "A4246G", "G4262C", "G4263A", "T4426A", "C4428A", "A4429C", "A4455T", "A4555G", "T4633G", "T4678C", "A4694C", "A4748G", "A4816G", "A4826T", "A4845C", "G4856A", "A4878G", "T4910C", "C4914T", "C4937A", "G4949A", "A5058C", "A5059G", "T5062G", "A5065G", "C5145T", "C5160T", "A5161C", "G5226C", "A5233G", "C5237T", "A5247G", "T5286C", "A5293G", "A5355C", "G5376A", "G5385A", "G5397A", "G5448A", "C5554T", "A5556G", "A5570G", "C5585G", "A5587C", "A5601T", "T5602A", "A5621T", "C5627T", "G5668A", "C5679T", "G5699A", "G5909A", "A5957G", "C6004T", "A6015G", "A6023G", "T6025G", "G6029A", "T6046A", "A6066G", "A6159C", "A6174G", "-6175A", "T6178C", "A6182T", "A6186C", "A6189G", "C6190G", "G6195A", "T6196C", "-6205G", "-6206T", "-6207G", "A6208T", "A6209G", "-6211A", "T6216C", "-6217G", "G6218A", "-6220G", "G6224T", "T6252C", "C6275A", "A6282C", "G6292A", "A6316G", "G6323A", "A6338T", "G6339C", "T6358C", "A6368G", "A6376G", "A6403G", "T6409C", "A6547G", "G6575A", "C6632T", "A6644G", "C6697-", "-6703A", "C6717T", "T6733A", "G6743A", "C6752G", "C6758T", "-6806G", "A6808T", "A6813G", "C6815-", "T6816-", "A6819T", "T6825A", "C6826T", "T6835G", "A6843G", "C6849G", "T6863A", "A6913G", "T6925C", "-6951T", "-6952A", "-6954G", "-6963G", "-6967A", "-6968T", "-6969C", "-6970A", "-6971A", "-6972A", "-6973T", "-6974A", "-6975G", "-6976T", "-6977A", "-6978C", "-6979A", "-6983T", "-6984C", "-6985A", "-6988C", "-6999G", "-7000T", "-7006T", "C7014G", "T7024C", "T7075C", "A7090C", "A7094G", "C7101T", "T7130G", "A7148C", "A7149C", "A7155G", "A7158C", "T7159A", "-7162G", "A7163-", "-7168A", "C7170T", "A7210G", "A7255G", "G7303A", "T7309A", "G7322T", "A7366G", "A7373C", "T7466C", "A7522G", "A7533G", "G7552A", "A7629G", "G7630A", "A7701G", "G7717A", "A7782G", "T7796A", "A7800G", "A7840G", "G7915A", "A7935G", "A7947G", "G7980A", "A8002G", "A8023G", "A8029C", "C8048G", "T8067G", "C8068G", "T8094C", "G8098A", "T8114G", "G8143A", "G8171C", "T8209C", "T8223C", "T8251C", "G8276A", "T8279G", "A8288G", "A8297G", "G8308A", "T8322G", "-8366T", "-8367A", "-8368G", "-8369C", "-8372A", "-8374T", "A8409C", "C8411T", "C8413T", "T8414A", "C8415G", "C8488T", "A8490G", "-8492A", "A8519G", "A8536G", "C8552T", "G8570A", "G8588A", "A8643G", "A8652C", "C8655A", "C8666G", "A8688C", "T8690C", "T8745C", "A8784G", "A8799G", "A8812C", "A8864G", "G8865-", "A8866-", "C8867-", "G8868A", "A8869C", "A8870G", "G8871A", "A8874G", "G8882A", "C8883T", "A8888C", "A8922C", "A8947T", "C9018A", "C9078A", "T9090C", "T9095A"], "INT": ["K7R", "S17N", "S39N", "I101L", "G106A", "T125V", "G163Q", "T218N", "Y227F", "D286E"], "RT-p51": ["E28G", "D121H", "T139K", "V189I", "P243A", "S251D", "P272S", "P294S", "E300A", "V329I", "A376S", "Y440F"], "RT-p66": ["E28G", "D121H", "T139K", "V189I", "P243A", "S251D", "P272S", "P294S", "E300A", "V329I", "A376S", "Y440F", "E471D", "S554R"], "gp120": ["D19N", "T35A", "Q54R", "S57G", "E59K", "N64K", "N71S", "N102T", "K107R", "-110C", "-111T", "-112R", "-113N", "-114N", "-115T", "I133T", "Q141K", "K143T", "D157N", "N158D", "T172A", "L260F", "I264V", "A288V", "D294E", "D297N", "Q300E", "H302Y", "L314I", "K316V", "V317K", "L321-", "E323I", "-324E", "F325N", "-326F", "-327K", "N330S", "T332S", "S337T", "S366G", "-367W", "-370S", "-371T", "-372S", "-373S", "-374T", "-375S", "-376N", "-377S", "-385T", "T387R", "N414D", "T416I", "L426V", "N432P", "N434S", "N435T", "T439I"], "gp41": ["V7F", "I24L", "K77R", "E137Q", "N160S", "S165T", "K166R", "H211R", "E215G", "G226D", "L242F", "L249V", "F255W", "I264T", "L271V", "V290L", "I307T", "A325T", "C326G", "I329V", "I332V", "L340*"], "nef": ["-10I", "-11V", "P25L", "E28A", "G29E", "A49V", "A50E", "E65Q", "I101V", "K104Q", "Q105K", "D108E", "N116H", "F135L", "M148V", "I153V", "N157T", "D175T", "E176N", "D177G", "R178-", "I194L", "Y202F"], "p1": ["N9Q"], "p17": ["A15E", "I75L", "I92M", "E93G", "L101V", "E103K", "K110G", "A118E", "N124-", "S125-", "S126-", "Q127-", "V128-", "S129-"], "p2": ["A10S"], "p24": ["S14A", "E75D", "Q86T", "I96M", "T116A", "K154R", "D180E", "N183T"], "p6": ["L1I", "F15L", "P30L", "K33P", "E34-", "T35-", "P36-", "A39V", "N47S", "P49H", "S51L"], "p7": ["K34R"], "pro": ["I64M"], "rev": ["Q14R", "I19V", "Q24D", "I52V", "I59V", "S61L", "S67R", "Q74E", "D84N", "I89S", "G99R", "G108A"], "tat": ["P60S", "H65R", "P70R", "K71Q", "T76A", "N80D"], "vif": ["M16R", "I31T", "K36N", "K77R", "Q80H", "I87L", "I98V", "H110Y", "D117E", "K158R", "I159R", "K160R", "P187S", "H192S", "*193W"], "vpr": ["P14L", "A19V", "G41A", "H45Y", "N48S", "I61T", "I63M", "D91N", "G94S"], "vpu": ["E5V", "S7F", "V21I", "R31K", "D75E"]}, "labels": {"aa": "INT: K7R, S17N, S39N, I101L, G106A, T125V, G163Q, T218N, Y227F, D286E; RT-p51: E28G, D121H, T139K, V189I, P243A, S251D, P272S, P294S, E300A, V329I, A376S, Y440F; RT-p66: E28G, D121H, T139K, V189I, P243A, S251D, P272S, P294S, E300A, V329I, A376S, Y440F, E471D, S554R; gp120: D19N, T35A, Q54R, S57G, E59K, N64K, N71S, N102T, K107R, -110C, -111T, -112R, -113N, -114N, -115T, I133T, Q141K, K143T, D157N, N158D, T172A, L260F, I264V, A288V, D294E, D297N, Q300E, H302Y, L314I, K316V, V317K, L321-, E323I, -324E, F325N, -326F, -327K, N330S, T332S, S337T, S366G, -367W, -370S, -371T, -372S, -373S, -374T, -375S, -376N, -377S, -385T, T387R, N414D, T416I, L426V, N432P, N434S, N435T, T439I; gp41: V7F, I24L, K77R, E137Q, N160S, S165T, K166R, H211R, E215G, G226D, L242F, L249V, F255W, I264T, L271V, V290L, I307T, A325T, C326G, I329V, I332V, L340*; nef: -10I, -11V, P25L, E28A, G29E, A49V, A50E, E65Q, I101V, K104Q, Q105K, D108E, N116H, F135L, M148V, I153V, N157T, D175T, E176N, D177G, R178-, I194L, Y202F; p1: N9Q; p17: A15E, I75L, I92M, E93G, L101V, E103K, K110G, A118E, N124-, S125-, S126-, Q127-, V128-, S129-; p2: A10S; p24: S14A, E75D, Q86T, I96M, T116A, K154R, D180E, N183T; p6: L1I, F15L, P30L, K33P, E34-, T35-, P36-, A39V, N47S, P49H, S51L; p7: K34R; pro: I64M; rev: Q14R, I19V, Q24D, I52V, I59V, S61L, S67R, Q74E, D84N, I89S, G99R, G108A; tat: P60S, H65R, P70R, K71Q, T76A, N80D; vif: M16R, I31T, K36N, K77R, Q80H, I87L, I98V, H110Y, D117E, K158R, I159R, K160R, P187S, H192S, *193W; vpr: P14L, A19V, G41A, H45Y, N48S, I61T, I63M, D91N, G94S; vpu: E5V, S7F, V21I, R31K, D75E"}}}, {"name": "G_NODE_0000029", "node_attrs": {"div": 0.12675999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A653G", "C694T", "-697G", "G771T", "C988A", "C1350G", "A1370G", "G1495A", "A1501G", "A1735G", "T1741-", "G1743A", "C1744T", "C1745A", "-1746G", "-1747C", "-1748C", "A2872G", "T2905C", "T2941C", "G2998A", "C3067A", "C3207T", "A3264G", "G4148A", "A4397T", "C4776A", "T4793C", "G5164A", "C5221T", "G5418A", "G5558A", "G5653A", "A5865G", "G6019A", "-6175C", "-6217A", "-6230A", "A6232G", "A6333G", "A6403C", "A6602T", "A6809G", "A6820G", "C6850A", "T6961C", "-6969G", "-6990A", "-6992A", "-6994T", "-6995A", "T7153C", "A7155C", "C7289G", "A7532C", "G8180A", "C8291T", "T8292G", "A8469G", "A8491G", "C8992T"], "INT": ["I208L"], "RT-p51": ["D324E", "A371V", "K390R"], "RT-p66": ["D324E", "A371V", "K390R"], "gp120": ["E4G", "-123K", "K127T", "N160S", "E183D", "K241E", "T250S", "N434T", "Q479E"], "gp41": ["K77Q", "G293S", "L330C"], "nef": ["I43V", "A50S"], "p17": ["T120I"], "p2": ["A12T"], "p24": ["P207A"], "p7": ["R10K", "N12S"], "rev": ["A15T", "G111E"], "tat": ["G61D"], "vif": ["L64I"], "vpu": ["G16S"]}, "labels": {"aa": "INT: I208L; RT-p51: D324E, A371V, K390R; RT-p66: D324E, A371V, K390R; gp120: E4G, -123K, K127T, N160S, E183D, K241E, T250S, N434T, Q479E; gp41: K77Q, G293S, L330C; nef: I43V, A50S; p17: T120I; p2: A12T; p24: P207A; p7: R10K, N12S; rev: A15T, G111E; tat: G61D; vif: L64I; vpu: G16S"}}, "children": [{"name": "KX389635", "node_attrs": {"div": 0.16693999999999998, "accession": "KX389635", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09NG010105"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A417C", "G424A", "G461A", "G527A", "A530G", "C539T", "A548G", "A558C", "A563G", "T571A", "G582A", "G612A", "A644G", "G645A", "A654T", "T665A", "C679A", "G696A", "A706G", "-707T", "C722T", "T731C", "T771C", "A891C", "C892T", "C905T", "T956G", "G968A", "C978A", "G1064T", "A1077G", "A1134G", "C1137T", "G1199A", "G1247A", "T1253C", "C1261G", "T1271G", "G1339A", "T1421G", "G1449A", "T1452G", "G1477A", "A1486G", "G1493A", "A1529T", "C1610T", "T1681C", "C1692A", "G1739-", "A1740-", "G1760A", "-1782A", "T1790C", "A1879G", "G2155A", "G2182A", "C2211A", "T2236A", "C2263T", "T2315C", "C2326T", "T2434C", "T2440C", "G2459A", "A2462G", "G2463A", "C2464A", "C2485T", "A2498G", "A2579T", "G2602A", "A2617C", "G2683A", "A2699G", "G2704A", "G2707A", "A2716G", "A2728G", "A2755G", "A2845G", "G2914A", "A2925G", "G3004A", "G3016A", "A3027G", "T3068C", "A3091G", "A3138C", "A3196G", "T3334G", "C3346T", "C3399T", "G3457A", "T3469C", "C3475T", "A3478G", "C3499T", "A3520G", "A3524G", "T3526C", "A3570C", "G3686A", "C3773T", "A3795G", "A3817G", "C4021T", "G4131C", "T4396C", "G4409A", "A4410T", "C4462A", "A4475C", "A4492T", "A4552G", "A4558G", "A4561G", "A4598G", "G4636A", "G4642A", "A4643G", "C4645A", "A4650C", "A4658G", "A4692C", "A4693G", "A4694C", "A4816G", "C4820A", "A4826C", "G4856A", "G4859A", "A4936G", "A4968T", "A5007C", "T5018C", "A5049C", "G5086A", "G5159C", "C5160T", "A5167G", "C5168T", "A5179G", "T5206C", "C5209T", "A5212G", "C5215A", "C5227A", "A5246G", "C5248A", "T5251A", "A5272G", "G5276C", "A5278G", "C5281T", "G5289C", "A5293T", "C5294T", "A5296G", "A5312G", "C5314T", "A5335C", "C5359G", "C5361A", "G5385A", "G5397T", "T5412G", "G5421A", "A5432C", "A5444G", "C5451T", "T5454C", "G5461A", "T5462A", "T5466C", "G5482T", "T5484A", "C5496A", "A5499G", "A5534G", "G5535A", "C5538G", "C5554G", "A5587G", "C5614G", "A5640G", "G5654C", "G5720T", "A5751C", "T5787A", "A5788T", "C5789T", "A5790G", "G5832C", "C5834A", "C5859T", "C5911T", "G5915A", "T5923C", "C5924T", "A5964G", "G5972A", "G6121A", "A6152T", "T6178A", "A6182G", "T6184C", "A6186C", "A6188G", "C6190T", "C6193G", "A6194G", "T6196G", "C6198A", "A6208-", "A6209-", "T6210-", "T6216C", "-6220A", "A6222C", "A6225G", "A6234G", "A6251G", "T6252C", "A6266C", "G6267A", "A6268G", "G6274A", "C6275A", "C6305A", "T6306C", "C6318A", "A6324G", "G6326A", "A6329G", "T6337C", "A6338T", "G6339C", "T6340A", "A6573G", "A6577C", "C6598T", "A6641C", "A6649G", "C6697T", "G6716A", "G6718A", "A6778T", "A6779G", "A6781C", "A6786G", "T6787A", "G6788C", "C6797G", "A6798G", "-6806G", "C6810T", "C6875T", "A6937G", "A6948G", "T6953-", "T6957A", "A6959T", "-6963T", "-6967C", "-6968T", "-6970A", "-6985T", "A6987G", "-6988A", "-6991T", "-6993G", "-6996C", "-6997A", "-6998C", "-6999C", "-7000A", "-7006G", "C7008A", "G7015C", "C7020A", "G7027A", "C7087T", "A7100G", "C7101A", "T7114C", "A7129T", "C7156G", "G7160A", "-7162T", "A7163-", "-7168A", "A7231G", "A7232G", "G7275A", "A7297G", "G7303A", "A7312C", "C7392T", "G7456A", "A7477G", "A7504T", "A7629G", "T7636A", "G7640A", "T7642C", "A7706C", "C7712G", "G7717A", "A7763C", "A7818G", "A7832G", "G7843T", "G7862A", "C7921T", "C7936T", "A7986G", "G7995A", "A8006G", "T8008G", "C8009A", "A8029T", "A8032G", "G8036T", "C8037T", "C8048G", "T8049C", "G8055A", "C8062T", "T8065C", "A8069C", "G8070T", "C8071T", "C8095A", "T8172G", "G8194A", "A8196T", "A8208G", "T8257C", "A8284G", "T8290C", "G8308A", "A8323C", "G8354A", "G8365A", "-8366C", "-8367A", "-8368G", "-8369T", "-8372A", "G8373A", "-8374A", "T8375G", "C8384T", "G8385A", "A8403G", "G8404C", "-8492T", "A8516G", "C8526G", "G8531A", "A8576G", "C8655A", "C8666A", "C8684T", "A8688C", "A8701T", "C8720T", "T8831C", "G8861A", "A8864G", "A8909G", "G8917A", "A8918G", "C8934A", "T8935A", "A9023C"], "INT": ["K7R", "E212I", "D229E", "I234L", "M275V"], "RT-p51": ["T39K", "E122K", "S123E", "I135V", "S162C", "K174N", "I202V", "K277R", "K311R", "N348T", "D413E", "P435L"], "RT-p66": ["T39K", "E122K", "S123E", "I135V", "S162C", "K174N", "I202V", "K277R", "K311R", "N348T", "D413E", "P435L", "T477A", "E492A", "V531I"], "gp120": ["A2V", "D21N", "K37R", "V40I", "T100S", "N109G", "-110T", "-111D", "-124G", "-125N", "-126I", "I133A", "R138Q", "Q141K", "L151T", "P155Q", "D157G", "N159D", "E240G", "E241D", "T263P", "A288T", "K309D", "N311R", "G312R", "L314I", "K315G", "-318A", "-319V", "-322K", "-324I", "-327N", "D384-", "P389Q", "T416E", "E436N", "I460V", "R474K"], "gp41": ["A30V", "D113N", "S133N", "I135L", "K154Q", "K172R", "I177V", "V187I", "E228G", "R231K", "I235V", "L242F", "A245F", "L249A", "S251N", "S256L", "V290G", "N298I", "N302S", "L340F"], "nef": ["S8N", "-10I", "-11K", "E15K", "R21A", "Q62E", "Q105K", "D108E", "N116H", "Y120F", "M173I", "R192K", "L198K"], "p17": ["A15E", "K28Q", "R30K", "I75L", "F79Y", "A83T", "E93K", "V104M", "I107L", "A115E", "N124S"], "p2": ["G9-", "A10S"], "p24": ["S14P", "T54L", "L83I", "T116A", "I135V", "A177G", "D180E", "R203K"], "p6": ["L1P", "L5I", "E19G"], "p7": ["S4N", "K7R", "E21D"], "rev": ["S7D", "T8S", "P30S", "H53R", "S54E", "S61F", "T62A", "C63F", "S67R", "P72S", "Q74P", "L83I", "E116N"], "tat": ["K7N", "N12K", "K19T", "N23S", "V29K", "V36L", "N40K", "K53R", "H54Q", "P60A", "K71E", "T76I"], "vif": ["R17K", "R19K", "T20K", "N22H", "K36R", "K77R", "D78E", "Q80H", "D117G", "I128L", "K141Q", "T155P", "R167K", "H192Y"], "vpr": ["A19L", "N48E", "E58Q", "R62T", "I70V", "Q77P", "P85R", "G94S"], "vpu": ["P3A", "S16T", "R38I", "E48D", "P76H"]}, "labels": {"aa": "INT: K7R, E212I, D229E, I234L, M275V; RT-p51: T39K, E122K, S123E, I135V, S162C, K174N, I202V, K277R, K311R, N348T, D413E, P435L; RT-p66: T39K, E122K, S123E, I135V, S162C, K174N, I202V, K277R, K311R, N348T, D413E, P435L, T477A, E492A, V531I; gp120: A2V, D21N, K37R, V40I, T100S, N109G, -110T, -111D, -124G, -125N, -126I, I133A, R138Q, Q141K, L151T, P155Q, D157G, N159D, E240G, E241D, T263P, A288T, K309D, N311R, G312R, L314I, K315G, -318A, -319V, -322K, -324I, -327N, D384-, P389Q, T416E, E436N, I460V, R474K; gp41: A30V, D113N, S133N, I135L, K154Q, K172R, I177V, V187I, E228G, R231K, I235V, L242F, A245F, L249A, S251N, S256L, V290G, N298I, N302S, L340F; nef: S8N, -10I, -11K, E15K, R21A, Q62E, Q105K, D108E, N116H, Y120F, M173I, R192K, L198K; p17: A15E, K28Q, R30K, I75L, F79Y, A83T, E93K, V104M, I107L, A115E, N124S; p2: G9-, A10S; p24: S14P, T54L, L83I, T116A, I135V, A177G, D180E, R203K; p6: L1P, L5I, E19G; p7: S4N, K7R, E21D; rev: S7D, T8S, P30S, H53R, S54E, S61F, T62A, C63F, S67R, P72S, Q74P, L83I, E116N; tat: K7N, N12K, K19T, N23S, V29K, V36L, N40K, K53R, H54Q, P60A, K71E, T76I; vif: R17K, R19K, T20K, N22H, K36R, K77R, D78E, Q80H, D117G, I128L, K141Q, T155P, R167K, H192Y; vpr: A19L, N48E, E58Q, R62T, I70V, Q77P, P85R, G94S; vpu: P3A, S16T, R38I, E48D, P76H"}}}, {"name": "DQ168579", "node_attrs": {"div": 0.15603999999999998, "accession": "DQ168579", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01NGPL0760"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A379C", "G398A", "A426C", "A437G", "A519G", "A619G", "C636T", "T641G", "T655G", "A658G", "G675A", "C688A", "G690A", "-707C", "C936T", "A989G", "A1002G", "A1025T", "A1089G", "A1145G", "C1211A", "C1214T", "A1256G", "C1280T", "C1330A", "A1388G", "C1444T", "G1455A", "C1536A", "G1543A", "T1547C", "A1564G", "A1614-", "C1615-", "A1616-", "G1619T", "C1711T", "C1712A", "C1714A", "T1728-", "T1729-", "C1730-", "G1732T", "A1733C", "G1736A", "A1738C", "A1740G", "-1741A", "A1770-", "G1771-", "G1772-", "G1773-", "A1774-", "G1775-", "A1777G", "-1782G", "C1783T", "C1795T", "T1826C", "A1834T", "A1907G", "C1986T", "G1999A", "A2032C", "A2368G", "T2488C", "A2727G", "T2779C", "G2815A", "G2833A", "G2837A", "A2845T", "C2848T", "A2915G", "G2926A", "A2989G", "C3056T", "C3100T", "C3133T", "G3221T", "G3340A", "T3349C", "A3378G", "G3379A", "A3491G", "C3589T", "G3630A", "G3631A", "C3649T", "T3652C", "A3684G", "T3746C", "A3761G", "T3898C", "A3923G", "G3997A", "G4036A", "C4180T", "A4259G", "G4549A", "A4646C", "C4656T", "A4684G", "T4769G", "G4864A", "A4895G", "T4916A", "A4950G", "T5006C", "C5050A", "A5054C", "A5123G", "A5136C", "T5152C", "G5159A", "T5188G", "C5213A", "C5214T", "T5224G", "C5227T", "A5355C", "C5469T", "C5552A", "A5563G", "A5564C", "A5575G", "G5581A", "C5614T", "T5626G", "T5636C", "G5668A", "C5678G", "A5694G", "T5877C", "C5884A", "C5958A", "A5965G", "C6010T", "C6014A", "G6029A", "A6037G", "T6046C", "A6066G", "G6079A", "A6180G", "G6183C", "T6187G", "A6192G", "G6195A", "C6198G", "-6200A", "-6201C", "-6202T", "-6203G", "-6204T", "-6205G", "-6206A", "-6207G", "T6210C", "-6211A", "A6212G", "T6213C", "-6220T", "G6224C", "A6225T", "-6227G", "-6228A", "-6229A", "A6234C", "T6242A", "A6263G", "A6281C", "C6289T", "C6298T", "T6331C", "A6368G", "A6371C", "T6511C", "A6574C", "T6590A", "G6605A", "C6632T", "A6648G", "A6668T", "A6669T", "A6684G", "A6734G", "T6735A", "C6777T", "A6779C", "A6786T", "A6794G", "G6799A", "-6806A", "A6812C", "A6814G", "G6821A", "C6826A", "T6827A", "T6828A", "-6830G", "-6831G", "-6832C", "A6833T", "A6834T", "A6843C", "C6849T", "T6863G", "T6946C", "-6951G", "-6952C", "-6954T", "A6960C", "-6963A", "T6964C", "C6966A", "-6967T", "-6968A", "-6970T", "-6971A", "-6972G", "-6973T", "-6974A", "-6975A", "-6976T", "A6987C", "-6988C", "-6991C", "-6993A", "-6996G", "-6997C", "-6998A", "-6999G", "-7000T", "-7006C", "A7026G", 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"A118E", "A119T", "S121G"], "p2": ["A7V", "A11S"], "p24": ["E75D", "I91V", "E98D", "S120G", "T200N"], "p6": ["P11L", "A12E", "F17V", "E19A", "E32-", "K33-", "T35V", "A39V", "Q52L"], "p7": ["L24I", "R26K", "K33R", "T50D", "E51-"], "pro": ["N37D", "P63L"], "rev": ["L13I", "R39K", "E57R", "S61D", "A68E", "L73F", "D84N"], "tat": ["P59H", "K63A", "N67D", "V69I"], "vif": ["K33R", "D61E", "R93K", "H110Q", "K122E", "T155K", "M189T"], "vpr": ["N7D", "Q11P", "A19T", "H28Q", "P37I", "H40Q"], "vpu": ["P3S", "S7A", "V10A", "V21I", "T24S", "D75E"]}, "labels": {"aa": "INT: M50V, I162V; RT-p51: K211R, D248N, E250D, I274V, P321S, A376S, Q428R; RT-p66: K211R, D248N, E250D, I274V, P321S, A376S, Q428R, I466V, R512K, K530R, I556V; gp120: V8A, T35N, Q54K, E59K, N71S, K107P, -110S, -111T, -112K, -113N, -114S, -115N, -116S, -117T, -124L, -125E, -126M, S130T, I137V, K143Q, N158D, T172A, I173L, E240D, S246T, D251N, L260F, E265G, N272F, K277R, D294E, T308I, K309Q, N311I, V317I, -318N, -319G, K320F, L321E, E323-, F325-, N330T, T332I, S337A, S365N, -367L, N369-, -374T, -375N, -376N, -377S, N378S, -379N, -380T, -381N, -382N, -383S, -385T, K391R, R401K, N414D, N432R, N433S, -437T, E438-, T439-, K472R; gp41: G109E, S133E, E137Q, N140I, D163S, S165T, R185K, N195K, Q199E, G221R, D232G, R236Q, S239G, S243T, R259L, V321A; nef: S8L, S9G, E15A, V16I, I20M, P53S, D54A, F81Y, E152D, E176T, D177E, R178K, V182I, I194L, D205N; p17: M31L, K62E, K95R, D102E, I107R, Q108R, K110N, E114K, A118E, A119T, S121G; p2: A7V, A11S; p24: E75D, I91V, E98D, S120G, T200N; p6: P11L, A12E, F17V, E19A, E32-, K33-, T35V, A39V, Q52L; p7: L24I, R26K, K33R, T50D, E51-; pro: N37D, P63L; rev: L13I, R39K, E57R, S61D, A68E, L73F, D84N; tat: P59H, K63A, N67D, V69I; vif: K33R, D61E, R93K, H110Q, K122E, T155K, M189T; vpr: N7D, Q11P, A19T, H28Q, P37I, H40Q; vpu: P3S, S7A, V10A, V21I, T24S, D75E"}}}]}]}]}]}, {"name": "G_NODE_0000030", "node_attrs": {"div": 0.11561999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": 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[{"name": "G_NODE_0000031", "node_attrs": {"div": 0.11665999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["-697G", "A1733-", "A1735-", "A2215T", "G5546C", "C6193T", "G6227A", "-6229C", "-6230T", "A6234G", "A6834-", "T6863G", "-6988T", "A7094G", "-7162T", "A8323C", "A8859C"], "RT-p51": ["E40D"], "RT-p66": ["E40D"], "gp120": ["-110T", "-111N", "-113N", "K127R", "N414D"], "nef": ["M173Q"], "p17": ["T120M"], "p2": ["A10S"], "p6": ["E19-"], "rev": ["E11Q"], "tat": ["R57A"]}, "labels": {"aa": "RT-p51: E40D; RT-p66: E40D; gp120: -110T, -111N, -113N, K127R, N414D; nef: M173Q; p17: T120M; p2: A10S; p6: E19-; rev: E11Q; tat: R57A"}}, "children": [{"name": "G_NODE_0000032", "node_attrs": {"div": 0.12164999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["-695G", "C988A", "A1404G", "A1474G", "A1501G", "A1687G", "T1722C", "A2241G", "G2567T", "C2975A", "G3080A", "T3131C", "C3223T", "G3229A", "A3766G", "G4109A", "G4148A", "G4735A", "T4757C", "C5359T", "G5363A", "C5469T", "G5535A", "T5917C", "-6211G", "-6218G", "C6298T", "G6575A", "G6581A", "A6800G", "-6806A", "A6833-", "T6835-", "T6838C", "T6844C", "-6948C", "-6951C", "-6986A", "A7148G", "-7164G", "-7165T", "G7465A", "G7720A", "C8048G", "T8171G", "A8407G", "A8409G", "G8537A", "G8554A", "T8746A", "T8770A", "G8875A"], "INT": ["V112I"], "RT-p51": ["K49R", "A158S"], "RT-p66": ["K49R", "A158S"], "gp120": ["-112T", "K307R", "F325-", "S337A", "-371T", "N437S"], "gp41": ["L249V"], "nef": ["Q22R", "G29R", "R71K", "F143Y", "R178K"], "p24": ["S14A", "S225G"], "p6": ["N3S", "F15L"], "p7": ["K3R", "N12S"], "rev": ["S7N", "S67R"], "vif": ["R50K"], "vpr": ["P85L"]}, "labels": {"aa": "INT: V112I; RT-p51: K49R, A158S; RT-p66: K49R, A158S; gp120: -112T, K307R, F325-, S337A, -371T, N437S; gp41: L249V; nef: Q22R, G29R, R71K, F143Y, R178K; p24: S14A, S225G; p6: N3S, F15L; p7: K3R, N12S; rev: S7N, S67R; vif: R50K; vpr: P85L"}}, "children": [{"name": "DQ168575", "node_attrs": {"div": 0.15350999999999998, "accession": "DQ168575", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01NGPL0674"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["T473C", "T486C", "G509A", "A521T", "A632G", "C636T", "T655G", "C665A", "G687A", "-694T", "-696A", "A716G", "G740A", "G785A", "A809C", "T830C", "A878C", "G887A", "C905T", "G968A", "G977A", "A989G", "A1002T", "C1013A", "G1016A", "T1055C", "A1070G", "A1073G", "A1077G", "G1090A", "G1109A", "G1184A", "C1330A", "A1370G", "C1444T", "A1486G", "G1495A", "T1559C", "G1661A", "C1692A", "G1697A", "G1720T", "-1733A", "-1735G", "C1756A", "A1759G", "A1775G", "-1782G", "C1795T", "C2024T", "G2056A", "A2059G", "T2083C", "T2095C", "C2281T", "T2383C", "A2400G", "G2401A", "A2406G", "G2463A", "C2485T", "G2548A", "C2605T", "G2629A", "T2716A", "G2833A", "G2837A", "C2839T", "T2873C", "C2941A", "A3058C", "C3067T", "G3142A", "T3170A", "A3224C", "C3225A", "T3368C", "G3378A", "A3379G", "T3449G", "A3494C", "T3535C", "A3538G", "A3642C", "C3688A", "T3844C", "T3904C", "A3973C", "T4039C", "C4043T", "A4050C", "A4071T", "A4081G", "A4084G", "A4146C", "C4149A", "G4156A", "T4162C", "G4228A", "T4234C", "C4288T", "A4492C", "G4549A", "A4564G", "G4622A", "A4684G", "G4696A", "T4712C", "G4737A", "G4765A", "C4820T", "C4826A", "G4859A", "G4923A", "A4967C", "C5041T", "T5102C", "G5170A", "A5233C", "C5237T", "A5240G", "A5336C", "T5490C", "G5493A", "T5554C", "A5563G", "T5568C", "G5581A", "C5611A", "C5614T", "G5626T", "T5688A", "T5731A", "A5748G", "-5799T", "-5811G", "T5832G", "C5869T", "T5911C", "G5912T", "C6024T", "G6035A", "A6130G", "T6151C", "T6163C", "A6168C", "-6170G", "-6172G", "-6173A", "-6174A", "-6175C", "-6179A", "-6180C", "C6183G", "T6184G", "A6185G", "T6187C", "A6192C", "-6198A", "-6201G", "-6203G", "-6204T", "-6205G", "-6206T", "-6207G", "A6209C", "T6210C", "T6213G", "-6215A", "-6219A", "-6220A", "-6222C", "A6275C", "G6314A", "G6326A", "A6403C", "A6464G", "C6551T", "A6577C", "T6582C", "A6584C", "A6599T", "G6611A", "T6637G", "A6641C", "T6655C", "A6689G", "A6692G", "C6697T", "A6742G", "T6766C", "A6786G", "T6787G", "G6790A", "T6792C", "C6797A", "A6798C", "G6799A", "G6802A", "G6803A", "T6804C", "A6807C", "A6808T", "G6809A", "C6810T", "A6811C", "C6815T", "A6819T", "G6821A", "A6822G", "G6823A", "A6824C", "T6825A", "C6826A", "T6827-", "T6828-", "T6829-", "A6836-", "G6871A", "C6874T", "T6892C", "-6947G", "-6949A", "-6950T", "-6952A", "-6953C", "-6954T", "-6955G", "-6956C", "-6957T", "-6958T", "-6962G", "-6963A", "-6964T", "-6965A", "-6966C", "-6967C", "-6974A", "-6975C", "-6976A", "-6977G", "-6978A", "-6979A", "-6980T", "-6981C", "-6982G", "-6983C", "-6984C", "-6985T", "-6987A", "G7004-", "A7007-", "T7009-", "G7042A", "G7060A", "C7079A", "C7080A", "A7097C", "T7144A", "T7153C", "A7155C", "T7156A", "A7158G", "G7199A", "G7304A", "G7333T", "C7429T", "G7517C", "A7570G", "G7628A", "G7633T", "C7658G", "A7666T", "C7678G", "T7681C", "A7722T", "T7775C", "A7782C", "C7921T", "G7995A", "G7997A", "G8061T", "T8064G", "C8065T", "T8067G", "G8079T", "G8143A", "G8180A", "G8194A", "A8208G", "C8213G", "C8268T", "C8293T", "A8303G", "G8304T", "A8338G", "G8356T", "-8369A", "A8396G", "A8400C", "C8410A", "C8411T", "C8471T", "A8484C", "C8485A", "G8487-", "C8488-", "A8489-", "C8490-", "A8491-", "C8494A", "T8495C", "C8499T", "T8505A", "C8509T", "C8543T", "T8582C", "A8604G", "C8740T", "C8771T", "A8780G", "A8784T", "G8799A", "G8804A", "T8835C", "T8855C", "T8903C", "A8967-", "G8968-", "A8970G", "G8971C", "G9005A", "G9007A", "A9009G", "A9042G", "A9099G", "G9135A"], "INT": ["P90S", "E92A", "Y99F", "N124T", "T125K", "G283S"], "RT-p51": ["K102R", "K104R", "S123N", "M178I", "D248N", "P294T", "V329I", "Y346H", "S359T", "T377Q"], "RT-p66": ["K102R", "K104R", "S123N", "M178I", "D248N", "P294T", "V329I", "Y346H", "S359T", "T377Q", "L452V", "I467L", "E516A"], "gp120": ["A20S", "T57I", "V61I", "D105T", "K107P", "N108C", "-109E", "T110N", "-114R", "-115N", "-116N", "-122E", "-123T", "-124E", "-125N", "-126L", "K141Q", "V154I", "E183D", "N204D", "E241N", "V243T", "I244L", "I249F", "A253T", "N261K", "T263P", "I279V", "R280G", "N311R", "-312E", "N328-", "-365A", "-367L", "-368L", "-370D", "-374T", "-375E", "-376S", "-377P", "-378N", "P409N", "I415L", "N432D", "N434T", "N435S", "T436D", "D449N"], "gp41": ["A1T", "V72L", "D109N", "E110D", "Q119E", "E121D", "S125R", "N140I", "N160T", "R231K", "D232N", "C253F", "L254R", "F255C", "R259L", "G293S", "N302S", "L304V", "A322V", "R334V"], "nef": ["W5L", "S9R", "I20L", "P24R", "Q35R", "T48Q", "A49N", "Q50-", "T51-", "P53S", "C55S", "A56V", "S88G", "T133I", "M148L", "V153I", "Q173L"], "p17": ["K62S", "I107R", "A118T"], "p2": ["A7V"], "p24": ["I91F", "T116A", "S120N", "T200N"], "p6": ["P5T", "S14I", "-19G", "-26Q", "K27R", "T35A", "A39V"], "p7": ["K7R", "R10K"], "pro": ["N37D"], "rev": ["I18T", "R50K", "G99R", "G111E", "E116K"], "tat": ["S60P", "K63E", "V69I"], "vif": ["K33R", "G37D", "V51I", "G60E", "H80Q", "D113N", "Q127H", "A152V"], "vpr": ["H45Y", "I46V", "Q77H"], "vpu": ["Q2K", "P3S", "A7S", "F27L", "L42I", "D75E"]}, "labels": {"aa": "INT: P90S, E92A, Y99F, N124T, T125K, G283S; RT-p51: K102R, K104R, S123N, M178I, D248N, P294T, V329I, Y346H, S359T, T377Q; RT-p66: K102R, K104R, S123N, M178I, D248N, P294T, V329I, Y346H, S359T, T377Q, L452V, I467L, E516A; gp120: A20S, T57I, V61I, D105T, K107P, N108C, -109E, T110N, -114R, -115N, -116N, -122E, -123T, -124E, -125N, -126L, K141Q, V154I, E183D, N204D, E241N, V243T, I244L, I249F, A253T, N261K, T263P, I279V, R280G, N311R, -312E, N328-, -365A, -367L, -368L, -370D, -374T, -375E, -376S, -377P, -378N, P409N, I415L, N432D, N434T, N435S, T436D, D449N; gp41: A1T, V72L, D109N, E110D, Q119E, E121D, S125R, N140I, N160T, R231K, D232N, C253F, L254R, F255C, R259L, G293S, N302S, L304V, A322V, R334V; nef: W5L, S9R, I20L, P24R, Q35R, T48Q, A49N, Q50-, T51-, P53S, C55S, A56V, S88G, T133I, M148L, V153I, Q173L; p17: K62S, I107R, A118T; p2: A7V; p24: I91F, T116A, S120N, T200N; p6: P5T, S14I, -19G, -26Q, K27R, T35A, A39V; p7: K7R, R10K; pro: N37D; rev: I18T, R50K, G99R, G111E, E116K; tat: S60P, K63E, V69I; vif: K33R, G37D, V51I, G60E, H80Q, D113N, Q127H, A152V; vpr: H45Y, I46V, Q77H; vpu: Q2K, P3S, A7S, F27L, L42I, D75E"}}}, {"name": "KR017776", "node_attrs": {"div": 0.15952999999999998, "accession": "KR017776", "clade_membership": {"value": "G"}, "country": {"value": "CM"}, "date": {"value": 2007.0}, "Strain_name": {"value": "BS48"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "T396C", "G424A", "A425G", "C482T", "G495A", "G524A", "G527A", "A530G", "G534T", "A558C", "A604G", "G607A", "A643C", "A684G", "-694A", "-696G", "A701C", "A708G", "G712A", "C713T", "A758C", "A774C", "T788C", "A956G", "T974C", "A980G", "T983C", "A1007G", "A1010C", "A1028C", "C1060A", "A1167T", "T1245C", "A1250G", "G1260T", "A1263T", "T1271A", "G1339A", "G1350A", "A1355G", "C1362T", "G1419A", "T1446-", "C1447-", "A1448-", "G1449-", "G1450-", "T1451-", "G1455A", "A1457T", "G1458A", "A1476G", "C1492A", "A1493G", "A1497C", "A1500G", "G1508A", "G1673A", "G1734-", "G1736A", "A1740G", "T1741G", "G1743A", "C1744T", "C1745A", "-1746G", "-1747C", "-1748C", "-1782A", "T1790A", "A1828G", "C1853T", "G1907A", "T1909C", "G1972A", "A1990G", "A1999G", "T2011A", "T2086C", "C2149T", "A2230G", "A2293G", "T2425C", "T2467C", "A2510G", "T2521A", "A2524G", "C2533T", "A2545G", "T2575C", "C2613G", "G2682A", "G2693A", "G2714A", "A2715G", "C2723T", "A2727G", "A2767G", "T2770A", "C2776T", "A2788G", "C2797T", "T2803A", "A2809G", "G2847A", "T2908C", "A2919G", "G2921A", "C2930A", "T2944C", "G2951-", "C2953T", "G2984A", "G3016-", "C3049T", "A3071G", "G3085A", "A3145G", "A3192G", "A3200T", "G3221T", "C3225T", "A3226G", "T3240C", "A3292C", "C3359T", "C3398T", "T3412C", "A3448G", "A3477G", "A3484G", "C3496T", "T3535A", "C3545T", "T3566C", "G3916A", "C3922T", "A4076C", "C4123T", "T4144C", "T4198C", "C4270T", "T4276C", "T4396C", "A4399G", "A4526G", "G4573A", "A4594G", "A4693C", "C4754T", "G4802A", "A4817G", "G4864A", "A4878G", "A4968T", "A5005C", "T5006A", "G5046A", "C5056A", "G5114A", "A5122G", "G5123A", "G5131A", "C5146A", "T5171C", "T5203C", "T5224G", "C5234A", "A5235T", "C5281A", "A5336G", "T5391C", "T5397A", "T5415C", "A5448T", "T5466C", "C5478T", "C5491T", "A5548G", "A5612C", "A5621T", "C5627T", "A5644G", "T5688C", "A5726G", "T5727A", "A5728G", "G5730A", "C5792A", "A5793G", "A5794G", "C5795A", "C5797-", "T5798-", "G5800T", "A5804C", "C5805A", "G5808A", "G5809C", "-5811T", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822T", "-5823G", "-5824G", "G5858A", "A5896G", "T5938G", "A6030G", "A6044T", "G6121A", "C6134T", "A6167G", "T6171-", "A6176-", "A6177-", "T6178-", "-6179G", "-6180T", "T6187G", "C6189A", "A6192G", "G6195C", "A6197G", "-6198G", "T6199G", "-6201C", "A6212T", "-6215C", "-6216G", "-6217T", "-6219T", "-6220G", "-6222A", "G6224A", "A6227C", "T6230A", "G6234C", "T6244C", "G6274A", "A6282G", "A6316G", "T6325C", "A6327G", "A6329G", "T6331G", "T6334C", "G6336A", "T6337A", "T6373C", "G6394A", "T6395A", "A6483C", "A6490C", "T6523C", "A6538T", "A6544C", "A6574C", "A6583G", "T6590A", "G6605A", "G6638C", "A6641T", "T6733A", "A6764G", "A6773G", "A6779-", "A6780-", "A6781-", "A6785T", "G6790C", "T6792G", "C6797G", "A6807G", "A6812C", "T6829C", "A6841G", "C6856T", "T6860A", "A6886T", "A6926G", "G6935C", "G6936C", "G6940A", "-6947C", "-6949T", "-6950A", "A6959-", "A6960-", "T6961-", "-6985A", "-6987G", "-6989A", "-6990A", "-6991T", "-6992A", "-6993G", "-6994C", "-6995A", "-6996C", "-6997A", "-6998A", "-6999G", "-7000T", "-7001A", "-7002A", "-7003T", "G7004A", "-7005A", "-7006A", "-7008A", "C7012T", "G7026A", "T7059G", "C7089A", "T7096A", "C7124A", "G7147T", "T7150A", "A7152C", "T7159A", "G7160A", "A7161G", "A7216G", "T7222C", "T7228C", "A7256G", "A7269G", "G7276A", "A7297G", "G7303A", "T7309C", "A7312G", "C7313A", "G7315A", "T7325C", "A7396G", "G7453A", "T7625C", "A7626T", "T7642C", "C7645T", "C7651T", "G7673A", "A7711G", "T7796A", "A7800G", "T7888A", "C7898G", "A7918T", "G7977A", "A7992G", "A7998G", "A8069G", "C8106T", "G8114C", "C8122T", "G8137T", "C8167A", "C8213A", "A8222T", "T8279G", "T8290C", "A8294C", "C8323T", "G8330A", "C8331T", "-8369T", "G8387A", "G8388A", "C8406A", "C8415G", "A8425T", "T8450C", "C8455A", "-8492T", "A8531G", "C8594T", "T8597C", "A8643G", "C8648T", "C8720T", "G8786A", "A8814G", "T8832C", "A8837G", "C8843T", "T8860A", "G8861A", "G8882A", "T8923G", "G8933A", "T8958G"], "INT": ["I101L", "I208M", "I251V"], "RT-p51": ["T139A", "T173R", "G196E", "A200T", "E207S", "K211R", "S251N", "K275R", "V276I", "L279I", "A286-"], "RT-p66": ["T139A", "T173R", "G196E", "A200T", "E207S", "K211R", "S251N", "K275R", "V276I", "L279I", "A286-"], "gp120": ["A2T", "E59G", "T64S", "-109S", "N111G", "R127-", "K143R", "N158G", "N159E", "S161K", "S181T", "Q210P", "K212N", "Q230H", "E240D", "E241K", "V243M", "S246T", "D251N", "E262Q", "T263S", "D294E", "N304D", "T308A", "K309Q", "W310-", "N311-", "T313-", "Q315K", "K316E", "V317I", "-318F", "L321-", "E323-", "S336T", "N358D", "G361P", "-365P", "S366T", "-367S", "-370S", "-372S", "-373N", "-374K", "-375N", "R391K", "V402G", "A412E", "D414E", "L424I", "N432E", "N433T", "N435K", "T436S", "I468V", "K472R"], "gp41": ["L4I", "F8L", "Y108L", "V124I", "S165T", "N166S", "N195K", "Q199E", "G225E", "D230G", "D232G", "S256G", "A268V", "V271L", "L304I", "I307L", "C326G", "N331H", "A343I"], "nef": ["V16I", "T23A", "P24-", "E28R", "A38D", "Q50H", "I101V", "M148I", "K158E", "I194R", "C206G"], "p17": ["R30K", "A54T", "K62R", "A67S", "I75L", "Q90R", "R91K", "E103A", "K110N", "K117E", "M120K", "S121G", "K122N", "S125G", "S126N"], "p2": ["S8-", "G9-", "A11T", "A12T"], "p24": ["Q9H", "I15L", "T110N", "S146C", "A177S", "T178S", "D180E", "R203K", "A207T", "V230I"], "p6": ["I21G", "A22I", "-23A", "-26P", "*50W"], "p7": ["S4G", "P9Q", "S12G"], "pro": ["I64M"], "rev": ["Q74R", "S89T", "P92S", "V97L", "P107T"], "tat": ["N7K", "K24N", "T58A"], "vif": ["N3S", "K36T", "R93K", "I98V", "I128L", "N140T", "V154I", "T157K", "K179R", "G182D", "P187H"], "vpr": ["A4T", "D7N", "H40Q", "Q44I", "S96P"], "vpu": ["Q2P", "E5V", "A7V", "I13V", "D40G", "K41E", "T66I"]}, "labels": {"aa": "INT: I101L, I208M, I251V; RT-p51: T139A, T173R, G196E, A200T, E207S, K211R, S251N, K275R, V276I, L279I, A286-; RT-p66: T139A, T173R, G196E, A200T, E207S, K211R, S251N, K275R, V276I, L279I, A286-; gp120: A2T, E59G, T64S, -109S, N111G, R127-, K143R, N158G, N159E, S161K, S181T, Q210P, K212N, Q230H, E240D, E241K, V243M, S246T, D251N, E262Q, T263S, D294E, N304D, T308A, K309Q, W310-, N311-, T313-, Q315K, K316E, V317I, -318F, L321-, E323-, S336T, N358D, G361P, -365P, S366T, -367S, -370S, -372S, -373N, -374K, -375N, R391K, V402G, A412E, D414E, L424I, N432E, N433T, N435K, T436S, I468V, K472R; gp41: L4I, F8L, Y108L, V124I, S165T, N166S, N195K, Q199E, G225E, D230G, D232G, S256G, A268V, V271L, L304I, I307L, C326G, N331H, A343I; nef: V16I, T23A, P24-, E28R, A38D, Q50H, I101V, M148I, K158E, I194R, C206G; p17: R30K, A54T, K62R, A67S, I75L, Q90R, R91K, E103A, K110N, K117E, M120K, S121G, K122N, S125G, S126N; p2: S8-, G9-, A11T, A12T; p24: Q9H, I15L, T110N, S146C, A177S, T178S, D180E, R203K, A207T, V230I; p6: I21G, A22I, -23A, -26P, *50W; p7: S4G, P9Q, S12G; pro: I64M; rev: Q74R, S89T, P92S, V97L, P107T; tat: N7K, K24N, T58A; vif: N3S, K36T, R93K, I98V, I128L, N140T, V154I, T157K, K179R, G182D, P187H; vpr: A4T, D7N, H40Q, Q44I, S96P; vpu: Q2P, E5V, A7V, I13V, D40G, K41E, T66I"}}}]}, {"name": "G_NODE_0000033", "node_attrs": {"div": 0.11785999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["T1790A", "C2776T", "T4805C", "G5159A", "G6336C", "-7003T", "-7008C", "A8503C", "A8584T", "C8843T"], "gp120": ["S161T", "N369-"], "gp41": ["I307V"], "nef": ["D54A", "Y81F"], "rev": ["S67P"], "vpr": ["A19T", "T84S"]}, "labels": {"aa": "gp120: S161T, N369-; gp41: I307V; nef: D54A, Y81F; rev: S67P; vpr: A19T, T84S"}}, "children": [{"name": "G_NODE_0000034", "node_attrs": {"div": 0.12459999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A519G", "T655G", "-696A", "C1091T", "A1265C", "C1292T", "T1446A", "G1449A", "C1536A", "A1601G", "C1613T", "A1616-", "G2332A", "T2499C", "A2752G", "C3399T", "C3475T", "G3775A", "T5062G", "A5090G", "A5128G", "A5140G", "A5143G", "A5148T", "G5155A", "T5162C", "A5186C", "G5418A", "T5687A", "T5787C", "C5980T", "T6169-", "A6194T", "-6204G", "-6205A", "-6207G", "T6210-", "T6213-", "A6320C", "T6460G", "A6471C", "C6477A", "A6644G", "C6697T", "G6809A", "A6824C", "T6825A", "-6947A", "-6962A", "-6964T", "-6965A", "-6966C", "-6967A", "-6983T", "-6984C", "-6985A", "-6987A", "-7006T", "C7087T", "T7153-", "A7256G", "G7633A", "C7658G", "G7717A", "C7783T", "C7801T", "G8143A", "A8222G", "T8279G", "A8294C", "A8367-", "A8461G", "A8604G", "T8860A", "G8861A", "G8936A", "G9033-"], "RT-p51": ["I135T", "E207D", "P435L"], "RT-p66": ["I135T", "E207D", "P435L"], "gp41": ["Q119E", "C326G", "N331H"], "nef": ["H40R", "S88G"], "p17": ["K62G"], "p2": ["S8T", "G9S"], "p7": ["L24I"], "rev": ["G99S"], "vif": ["K181R", "E185G", "N186S", "T188S", "S190N"], "vpr": ["Y15F", "N28H"], "vpu": ["F27Y"]}, "labels": {"aa": "RT-p51: I135T, E207D, P435L; RT-p66: I135T, E207D, P435L; gp41: Q119E, C326G, N331H; nef: H40R, S88G; p17: K62G; p2: S8T, G9S; p7: L24I; rev: G99S; vif: K181R, E185G, N186S, T188S, S190N; vpr: Y15F, N28H; vpu: F27Y"}}, "children": [{"name": "KX389615", "node_attrs": {"div": 0.16943, "accession": "KX389615", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10NG020420"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G361C", "G378T", "C393A", "A418G", "T422C", "G424A", "A426C", "G461A", "G481A", "T486C", "T503C", "A533G", "G542A", "T593C", "A604T", "G607A", "C636T", "A650G", "C665A", "A678G", "A693G", "-694C", 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"T3977C", "G4148A", "A4243G", "A4255G", "T4261A", "T4276C", "T4396C", "C4412T", "G4549A", "A4555G", "C4776A", "C4805G", "C4826T", "T4827C", "G4856A", "A4968T", "A5042G", "A5048C", "A5059G", "G5075A", "G5086A", "A5099G", "T5102C", "A5113G", "G5131A", "C5146A", "T5182C", "T5206C", "C5209T", "A5212G", "C5215A", "C5227A", "C5248T", "A5355T", "G5362A", "T5397C", "T5430A", "A5448C", "C5491T", "T5554C", "C5611A", "A5612G", "A5613C", "G5620A", "A5622C", "T5669C", "T5688C", "G5700A", "A5729G", "G5730A", "C5734A", "A5746G", "G5747C", "G5755A", "C5792A", "A5793G", "A5794G", "C5795A", "C5797T", "-5799G", "T5801C", "G5802A", "G5803A", "C5805A", "A5806C", "G5809-", "T5810-", "-5813T", "-5814G", "-5815G", "-5816G", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822T", "-5823G", "-5824G", "G5858A", "C5869T", "G5894-", "T5895-", "A5896-", "C5897-", "C5898-", "A5899-", "G5900-", "T5911C", "A5914C", "G5939A", "A5940G", "T5956C", "C5984T", "A6008G", "C6024T", "G6028A", "T6046C", "A6164-", "C6165-", "T6166-", "A6167-", "A6168-", "T6171-", "T6178A", "-6179A", "-6180A", "T6181G", "A6182G", "C6189T", "A6192C", "-6198C", "T6199C", "-6201A", "-6203T", "-6206A", "A6212-", "A6214-", "-6218G", "-6219A", "-6220A", "-6222T", "A6225C", "A6226T", "G6234A", "C6241T", "A6251G", "A6275C", "A6303G", "A6327G", "A6333G", "C6336A", "T6340C", "T6418C", "G6436T", "T6445C", "T6454C", "G6458C", "A6478C", "C6482G", "A6490C", "T6499C", "A6505G", "A6525C", "A6583G", "T6590C", "A6617G", "C6632T", "T6655A", "A6668T", "A6684G", "A6685G", "A6716T", "T6722C", "T6766C", "C6777A", "A6781T", "A6786C", "G6790T", "A6791G", "C6797A", "G6799T", "-6806A", "A6807T", "A6808G", "A6812C", "G6821A", "A6822G", "C6826A", "T6828A", "-6832A", "-6834C", "A6836C", "T6846C", "C6849A", "C6850G", "T6852A", "A6855G", "T6857C", "T6883C", "G6940A", "-6948T", "-6949A", "-6950T", "-6951C", "-6952A", "-6953A", "-6954C", "-6955T", "-6956A", "-6957A", "-6958T", "A6960G", "-6963G", "-6986G", "-6989A", "-6990A", "-7005G", "T7009C", "G7026A", "G7027A", "G7044A", "C7079T", "C7089A", "A7090G", "T7096G", "A7102C", "G7107A", "A7108C", "T7127A", "A7151-", "A7152-", "A7154-", "A7155-", "T7156-", "A7157-", "A7158-", "T7159-", "T7162G", "-7164G", "-7165T", "A7232G", "A7255T", "A7268C", "G7270T", "G7275A", "G7276A", "C7289G", "T7392C", "C7411T", "A7426G", "G7440A", "G7453T", "G7456A", "T7462A", "C7469A", "A7470G", "A7477G", "A7492G", "G7517C", "A7519G", "G7552A", "C7582T", "A7590C", "G7594A", "A7604T", "T7606C", "T7609C", "T7622A", "T7636A", "A7641G", "T7656A", "A7660C", "A7666T", "C7675T", "T7681A", "C7688G", "A7690C", "C7691A", "A7692C", "C7699T", "G7701C", "C7702T", "A7705G", "A7732G", "A7734G", "G7735A", "A7764G", "G7765A", "T7775C", "T7796A", "T7825C", "A7918G", "C7921T", "C7939T", "A8011C", "G8017C", "A8032G", "C8038G", "G8050A", "C8062G", "C8063A", "C8065T", "C8080A", "C8092A", "G8098A", "G8110A", "A8111G", "T8115C", "G8117A", "A8118C", "G8145C", "T8203C", "A8208G", "G8234A", "T8235C", "T8256C", "T8265C", "C8320T", "G8348A", "A8363G", "A8364G", "-8367T", "-8369C", "A8372G", "T8374C", "C8415A", "A8426G", "-8492A", "C8499G", "G8561A", "A8573G", "G8590C", "C8603T", "C8655G", "G8732A", "A8744G", "T8746A", "T8766C", "G8767C", "T8831C", "G8852A", "G8875A", "A8876T", "G8893A", "A8894G", "A8904G", "C8934A", "C8951T", "A8977G", "C8978A", "A8979C", "G8981C", "G8982A", "C8985T", "T8986G", "C8989-", "C8990-", "C8993T", "T8994G", "G9005-", "G9006-", "G9007-", "G9008-", "A9009-", "G9010-", "G9011-", "C9012-", "G9013-", "C9014-", "G9015-", "G9016-", "C9017-", "A9018-", "T9019-", "G9020-", "G9021-", "G9022-", "A9023-", "G9024-", "G9025-", "G9026-", "A9027-", "C9028-", "T9029-", "G9030-", "G9031-", "G9032-", "A9034-", "G9035-", "T9036-", "G9037-", "G9038-", "C9039-", "T9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "A9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "T9060-", "A9061-", "A9062-", "G9063-", "C9064-", "A9065-", "G9066-", "C9067-", "C9068-", "G9069-", "C9070-", "T9071-", "T9072-", "C9073-", "T9074-", "C9075-", "G9076-", "C9077-", "C9078-", "T9079-", "G9080-", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-"], "INT": ["R20K", "M50T"], "RT-p51": ["D40E", "T173I", "K211R", "P272A", "V276I", "T377I", "V386I", "Q428R"], "RT-p66": ["D40E", "T173I", "K211R", "P272A", "V276I", "T377I", "V386I", "Q428R", "K461R", "I466V", "T468A", "Q483L", "V531I"], "gp120": ["A2T", "V14-", "P15-", "V16-"], "gp41": ["V30A", "R46K", "H53Q", "Q56R", "V72L", "N96T", "T101S", "S107T", "D113G", "I118K", "E119D", "E121D", "N126K", "Q129D", "Q130T", "S133T", "K144R", "K154R", "S165T", "C253W", "L254I", "F263L", "T270A", "V271A", "E272T", "G281A", "V290L", "N302S", "V311T", "V318A", "V321A"], "nef": ["S8G", "S9C", "I10M", "V11A", "P25T", "P53A", "G83A", "Q105E", "C142P", "R178N", "R184K", "S188G", "L198I"], "p17": ["S9T", "A15S", "K28R", "R30K", "M31L", "G49D", "Q90L", "R91K", "I107R", "T115A", "M120A", "N124T"], "p24": ["S14A", "L83M", "I91F", "I96M", "T116A", "I124V"], "p6": ["L1P", "N3S", "P5L", "-19E", "-23P", "P24S", "S25P", "E32D"], "p7": ["R10G", "E21V", "K34R", "T50N"], "pro": ["K45R"], "rev": ["P31S", "I55L", "E57Q", "T62A", "L64V", "A68T", "P72D", "L73F", "L78I", "H82N", "D84N", "D88S", "R90N", "G108V"], "tat": ["K24N", "S60P", "T77I"], "vif": ["L64I", "H73Q", "I128L", "K158R", "R167K", "K176R", "G182D", "P187H"], "vpr": ["R86Q"], "vpu": ["Q2S", "E5N", "V21A", "K41R", "L43I", "R47A", "A50T", "T66K", "D70G"]}, "labels": {"aa": "INT: R20K, M50T; RT-p51: D40E, T173I, K211R, P272A, V276I, T377I, V386I, Q428R; RT-p66: D40E, T173I, K211R, P272A, V276I, T377I, V386I, Q428R, K461R, I466V, T468A, Q483L, V531I; gp120: A2T, V14-, P15-, V16-; gp41: V30A, R46K, H53Q, Q56R, V72L, N96T, T101S, S107T, D113G, I118K, E119D, E121D, N126K, Q129D, Q130T, S133T, K144R, K154R, S165T, C253W, L254I, F263L, T270A, V271A, E272T, G281A, V290L, N302S, V311T, V318A, V321A; nef: S8G, S9C, I10M, V11A, P25T, P53A, G83A, Q105E, C142P, R178N, R184K, S188G, L198I; p17: S9T, A15S, K28R, R30K, M31L, G49D, Q90L, R91K, I107R, T115A, M120A, N124T; p24: S14A, L83M, I91F, I96M, T116A, I124V; p6: L1P, N3S, P5L, -19E, -23P, P24S, S25P, E32D; p7: R10G, E21V, K34R, T50N; pro: K45R; rev: P31S, I55L, E57Q, T62A, L64V, A68T, P72D, L73F, L78I, H82N, D84N, D88S, R90N, G108V; tat: K24N, S60P, T77I; vif: L64I, H73Q, I128L, K158R, R167K, K176R, G182D, P187H; vpr: R86Q; vpu: Q2S, E5N, V21A, K41R, L43I, R47A, A50T, T66K, D70G"}}}, {"name": "KX389646", "node_attrs": {"div": 0.16749999999999998, "accession": "KX389646", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2012.0}, "Strain_name": {"value": "12NG060248"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C496G", "T506C", "G509A", "A512G", "G518A", "A521G", "A556G", "A558T", "A562G", "T571A", "C590A", "A659G", "G686A", "G687A", "C688T", "G690-", "C691-", "A692-", "A693-", "G697A", "A704G", "T719G", "T734A", "G771C", "G822T", "A869G", "A881G", "G941A", "T947A", "A1025C", "T1052A", "C1060A", "C1061T", "G1090A", "A1134G", "G1247A", "T1253A", "G1313A", "A1337G", "A1370G", "A1388G", "C1403T", "G1430A", "G1472A", "A1476G", "A1493G", "G1498A", "A1503G", "C1517T", "T1547C", "A1614-", "C1615-", "G1619T", "T1646C", "A1657G", "C1712T", "C1721-", "T1722-", "G1725T", "G1726T", "G1727C", "T1729C", "C1730G", "-1733T", "G1734T", "-1735C", "T1741G", "A1742G", "G1743A", "C1744G", "C1745A", "-1746A", "-1747A", "-1748G", "T1752C", "C1754T", "C1756T", "A1781G", "-1782C", "C1783T", "C1785A", "A1790G", "G1794A", "A1861G", "A1951G", "C1986T", "G2182A", "A2210G", "C2281T", "A2293G", "T2302A", "A2311G", "A2314G", "C2335T", "C2386T", "G2389T", "A2404G", "G2447A", "T2453C", "G2459A", "G2473A", "T2521C", "C2533T", "T2575C", "G2629A", "C2635T", "G2682A", "A2699G", "G2704A", "T2708C", "G2725A", "A2728G", "T2737A", "C2814T", "A2818G", "G2842A", "G2847A", "T2890C", "G2950A", "A2974G", "G3019A", "A3043G", "G3085A", "A3130T", "G3236A", "G3276A", "G3277A", "A3280G", "T3349C", "G3378A", "A3379G", "T3449A", "G3457A", "A3592T", "A3607G", "G3630A", "A3655G", "A3733G", "C3787T", "G3816A", "A3985G", "C4042T", "G4096A", "C4132T", "A4303G", "A4430C", "A4677G", "C4679G", "A4693G", "A4694G", "G4696A", "C4826A", "G4838A", "G4859A", "C4898T", "A4968G", "C5018T", "A5024G", "C5027T", "A5049G", "C5056A", "A5063T", "G5066A", "C5146G", "A5185G", "T5197C", "C5213A", "C5214T", "T5224G", "C5234G", "T5239C", "T5263G", "G5276C", "C5351T", "A5355C", "C5356T", "T5424C", "A5433G", "C5538G", "C5546G", "A5547C", "A5548C", "C5551T", "A5587G", "A5616C", "A5623G", "T5636C", "A5640G", "T5670A", "G5737A", "G5775A", "-5799T", "-5811G", "T5870C", "A5964G", "C5989T", "C6004A", "A6023C", "A6030G", "T6100C", "A6118C", "G6121A", "C6134T", "C6145T", "-6169G", "-6170G", "-6172C", "-6173A", "-6174C", "-6175T", "A6177C", "-6179T", "-6180G", "T6181C", "C6183A", "T6184C", "T6187G", "C6190T", "T6193G", "A6197-", "-6198G", "T6199A", "-6201G", "-6203A", "-6206G", "-6210G", "-6211C", "-6213G", "A6221-", "A6223-", "G6224-", "A6225-", "A6233C", "T6250G", "A6254G", "C6255A", "A6263G", "G6267A", "A6273G", "A6282C", "G6292A", "T6295G", "C6298T", "G6326A", "A6330C", "T6334C", "G6339C", "A6353C", "A6371G", "T6421C", "G6456A", "G6457T", "A6535G", "T6563C", "G6575A", "A6595C", "A6599T", "G6611A", "C6612G", "T6618C", "G6628A", "T6637G", "A6641C", "A6664G", "T6688C", "A6694T", "A6716G", "G6718A", "T6719G", "G6725A", "C6758T", "A6764G", "T6766G", "G6771A", "G6774A", "A6779C", "A6789G", "T6792C", "T6794A", "C6810G", "A6811C", "A6813C", "C6815G", "T6816C", "A6817T", "G6823A", "C6826T", "A6833-", "T6838C", "C6849G", "A6854G", "G6863T", "T6904C", "A6910G", "G6935A", "G6936A", "C6938T", "A6945C", "-6948A", "-6949T", "-6963T", "-6986A", "-6989G", "-6990G", "-6991A", "-6992A", "-6993C", "-6994C", "-7001A", "-7002A", "-7005A", "C7014T", "A7015T", "A7085G", "G7094A", "T7096A", "T7099C", "C7124A", "G7147T", "-7153G", "A7155C", "A7157G", "A7158G", "A7161C", "T7162C", "-7164C", "-7165C", "C7170T", "C7174T", "A7269G", "G7270A", "G7343A", "G7428A", "G7465A", "C7480T", "G7508C", "G7628A", "G7640A", "G7677A", "A7706C", "A7722C", "T7757C", "A7807G", "G7862A", "A7964G", "C8048G", "C8103T", "G8114A", "G8144C", "G8145T", "T8171G", "A8193G", "A8204G", "A8233T", "C8238G", "G8255A", "T8281A", "C8293T", "C8323T", "G8349A", "G8350A", "A8364-", "G8365-", "T8366-", "G8368-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "T8375-", "A8378C", "A8386C", "A8402G", "C8406A", "A8407G", "A8409G", "A8429G", "A8446G", "T8462A", "A8484C", "C8485A", "G8487-", "C8488-", "A8489-", "C8490-", "A8491-", "C8494A", "G8508A", "C8543A", "T8546C", "T8582C", "G8590A", "T8591C", "C8606T", "A8652C", "A8660G", "T8690C", "A8701T", "A8784G", "G8787A", "A8788G", "G8798A", "A8815C", "A8851G", "A8869G", "G8870T", "G8886C", "T8887A", "C8913A", "G8933A", "T8935A", "A8950T", "G8954A", "T8994C", "G9005A", "A9023T", "A9041T", "A9042G", "C9078T", "T9097G", "T9108C", 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"INT: R14K, T125A, K219Q; RT-p51: T39A, V118I, E122K, M178I, G196E, I202V, F214L, T240M, S251N, V381I, R394K; RT-p66: T39A, V118I, E122K, M178I, G196E, I202V, F214L, T240M, S251N, V381I, R394K, L452I, R512K; gp120: K37R, D50E, T57P, E59G, -112L, N113R, R127-, N132K, T134D, I137V, R138K, K140R, K143T, I156L, D157G, N158G, N159D, N160S, S162T, N167H, I173V, R201N, D202E, N206T, T208K, E241K, I249F, A253S, I255T, N261K, T263P, I264V, R280S, T288A, F289V, A291T, H302Y, N304E, S306N, K309Q, -312G, L314I, T332S, N334D, G361K, -365G, S366T, -367N, -384D, -385T, T387I, I411V, D414K, L424I, N433K, N434T, N435G, T436A, N437T, T439I, I468V, K472R; gp41: A14T, S42N, V69L, D109N, D113N, S125N, I135L, N140T, V187I, E215R, R221G, L249V, A267V, V271I, S277R, G281L, K297R, I301V, A312G, V318I; nef: G3N, S8-, S9-, I10-, V11-, E15A, I20M, Q22R, T23A, Q35R, T48Q, A49N, Q50-, T51-, A56T, G83D, K104Q, Y120F, Y135F, M148V, D149S, K158T, Q170R, E176G, V182Q, L198Q, Y203F; p1: N9S; p17: A54G, M61I, E74G, I75F, K76R, F79Y, E102-, E103-, V104-, E105-, K106E, I107E, Q108V, K109E, S111R, Q113K, E114N, T115S, K117Q, A118E, A119T, M120Q, S121K, K122I; p24: S14P, A31S, Q86P, E98D, T110N, S120N, I135V; p6: F15-, -26L, T35L, P36T, A39T; p7: S4G, R11K, I13V, T50D, E51-; pro: N37D, P63L; rev: T8S, Q11A, K39R, P67R, S89N, S99T; tat: H54Q, A57G, T58P, P59S, K71E, N80G; vif: I31V, K36R, G37D, H80Q, I128V, T155A, T157K, I159S, P187R; vpr: P37I, H40Q, Q44E, E58Q, S84L; vpu: I6V, V10A, D44N"}}}]}, {"name": "G_NODE_0000035", "node_attrs": {"div": 0.12183, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A632G", "-694T", "-695G", "G703A", "G771C", "C1514T", "A1588G", "A2032G", "A2314G", "G2629A", "T2716A", "G2815A", "G4109A", "A4539G", "A4677G", "C4761T", "C4776A", "C5356A", "C5792-", "A5793-", "A5794-", "C5795-", "C5797-", "G6019A", "-6170G", "-6172C", "C6202-", "-6211G", "-6216T", "-6217G", "-6219A", "G6526A", "A6776G", "-6834A", "T6928C", "-6998G", "-6999A", "-7001A", "-7002A", 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"T5466C", "G5558A", "A5563G", "G5565A", "A5594G", "T5606A", "A5607T", "C5614T", "A5622G", "A5640G", "G5668A", "G5683A", "T5688C", "G5720A", "A5721G", "G5784A", "-5792A", "-5793G", "-5794G", "-5795A", "G5800T", "A5804C", "C5805A", "T5807C", "G5808T", "G5809C", "-5811T", "-5813T", "-5814G", "-5815G", "-5817C", "-5818A", "-5820G", "T5832G", "A5864G", "A5867G", "G5939A", "A5957G", "C5980T", "A6023T", "C6024T", "G6028A", "C6116T", "A6158G", "C6165G", "A6167C", "G6170A", "T6171A", "C6172T", "-6173G", "-6174T", "-6175C", "A6177C", "-6179T", "-6180G", "T6187C", "A6188T", "C6190T", "A6191G", "A6194G", "-6198C", "A6200-", "A6212G", "-6215C", "-6218C", "A6226T", "A6227G", "T6252C", "A6281G", "G6292A", "C6318A", "T6328G", "A6333C", "T6337C", "G6339C", "T6397C", "T6438A", "G6533A", "A6574C", "G6575A", "C6632T", "A6640G", "A6641T", "A6648C", "A6668T", "A6669C", "T6688C", "A6716G", "C6717T", "T6772C", "G6774A", "G6776T", "A6779G", "A6780C", "A6789G", "A6808G", "A6824G", "T6827C", "-6830A", "-6831C", "A6837T", "T6838C", "A6841T", "C6858T", "T6860C", "G6863A", "A6877G", "T6883C", "A6921T", "A6959-", "A6960-", "T6961-", "-6974G", "-6975C", "-6976A", "-6977T", "-6978C", "-6979A", "-6982A", "-6983A", "-6984A", "-6985A", "-6986G", "-6987T", "-6992G", "-6994A", "-6995T", "-6996C", "-6997A", "-7000A", "A7001C", "T7003G", "C7006A", "C7008A", "G7027A", "A7106C", "G7107A", "A7108C", "A7126T", "A7155T", "G7160A", "G7198A", "T7228C", "G7307A", "A7427G", "G7428C", "C7429T", "G7441A", "A7519G", "A7532C", "C7561T", "C7605G", "T7627C", "A7629G", "A7666C", "G7673A", "G7677A", "G7712C", "G7790A", "C7805T", "A7807G", "T7877G", "T7912C", "A7918G", "T7968C", "C7969A", "G8019A", "C8095A", "G8098A", "A8119G", "C8146G", "C8147A", "C8167T", "G8173A", "A8222T", "A8269G", "T8279G", "A8294C", "G8335A", "A8364C", "T8366C", "A8396G", "A8405G", "A8407G", "A8409C", "C8412A", "G8436C", "A8453G", "C8499T", "T8501C", "C8514A", "A8555G", "A8573G", "C8603T", "C8771T", "A8784T", "C8790A", "A8815C", "A8834G", "A8844G", "T8860A", "G8861A", "A8922C", "C8960A", "G9005A", "G9007A", "G9033-", "C9078T", "T9084G", "G9085A"], "INT": ["Y99F", "G106A", "N124S", "E212Q", "R284G"], "RT-p51": ["K49R", "D121H", "S123N", "S163T", "T173V", "D248N", "E250D", "D320N", "D324E", "E370D", "A371I", "R394K", "W402*", "Y405H", "T409I", "D413E", "T431P"], "RT-p66": ["K49R", "D121H", "S123N", "S163T", "T173V", "D248N", "E250D", "D320N", "D324E", "E370D", "A371I", "R394K", "W402*", "Y405H", "T409I", "D413E", "T431P", "S554N"], "gp120": ["N4D", "N5D", "D29N", "T35A", "T57F", "N102D", "T104S", "N105H", "V106N", "N107V", "N108T", "-109C", "-112C", "N113A", "-114G", "N125D", "V133A", "K143E", "P155Q", "N158K", "N160T", "S162T", "F195Y", "V227I", "E240D", "E241K", "L260F", "T263S", "E265A", "N272S", "T288V", "T308S", "K309A", "N311K", "-312G", "-326T", "N328I", "K329N", "S335L", "S336P", "S337T", "Y356F", "-365S", "-366E", "-367Q", "-368G", "-369N", "R418H", "N435I"], "gp41": ["V2I", "L4G", "S42A", "K77Q", "T101S", "N109S", "E121D", "V124I", "S125N", "E137Q", "D163N", "S192A", "I222T", "S239N", "L282I", "V307L", "C326G", "N331H"], "nef": ["S8R", "Q22R", "A32P", "P53S", "L58I", "P150T", "K158T", "I168V", "I194L", "C206*"], "p17": ["K62S", "A67S", "L68I", "R91K", "K95R", "S111N", "T115A", "S121G", "N124K", "S125N"], "p2": ["S10A", "A12T"], "p24": ["S14P", "S16T", "I91F", "P93A", "S120N", "R203K", "A207T"], "p6": ["P5L", "I21G", "A22I", "T35S", "A39V", "S51L"], "p7": ["S4G"], "pro": ["T12A", "Q35E", "K41R", "K55R", "P63A"], "rev": ["A15T", "R17K", "T62A", "L83I", "D84N", "T91A", "P100D", "P107S", "V109I"], "tat": ["K24N", "S61N", "K63E", "S87Q"], "vif": ["R17K", "I31V", "F39L", "E45D", "D61N", "K63E", "R67T", "S116A", "T157K", "K158S", "S190N", "*193W"], "vpr": ["A4T", "D7N", "H45Y", "E55V", "I70T", "F72Y", "Q77K", "R86Q", "V89R", "G94S"], "vpu": ["P3S", "V21I", "V26I", "R38K", "D75E"]}, "labels": {"aa": "INT: Y99F, G106A, N124S, E212Q, R284G; RT-p51: K49R, D121H, S123N, S163T, T173V, D248N, E250D, D320N, D324E, E370D, A371I, R394K, W402*, Y405H, T409I, D413E, T431P; RT-p66: K49R, D121H, S123N, S163T, T173V, D248N, E250D, D320N, D324E, E370D, A371I, R394K, W402*, Y405H, T409I, D413E, T431P, S554N; gp120: N4D, N5D, D29N, T35A, T57F, N102D, T104S, N105H, V106N, N107V, N108T, -109C, -112C, N113A, -114G, N125D, V133A, K143E, P155Q, N158K, N160T, S162T, F195Y, V227I, E240D, E241K, L260F, T263S, E265A, N272S, T288V, T308S, K309A, N311K, -312G, -326T, N328I, K329N, S335L, S336P, S337T, Y356F, -365S, -366E, -367Q, -368G, -369N, R418H, N435I; gp41: V2I, L4G, S42A, K77Q, T101S, N109S, E121D, V124I, S125N, E137Q, D163N, S192A, I222T, S239N, L282I, V307L, C326G, N331H; nef: S8R, Q22R, A32P, P53S, L58I, P150T, K158T, I168V, I194L, C206*; p17: K62S, A67S, L68I, R91K, K95R, S111N, T115A, S121G, N124K, S125N; p2: S10A, A12T; p24: S14P, S16T, I91F, P93A, S120N, R203K, A207T; p6: P5L, I21G, A22I, T35S, A39V, S51L; p7: S4G; pro: T12A, Q35E, K41R, K55R, P63A; rev: A15T, R17K, T62A, L83I, D84N, T91A, P100D, P107S, V109I; tat: K24N, S61N, K63E, S87Q; vif: R17K, I31V, F39L, E45D, D61N, K63E, R67T, S116A, T157K, K158S, S190N, *193W; vpr: A4T, D7N, H45Y, E55V, I70T, F72Y, Q77K, R86Q, V89R, G94S; vpu: P3S, V21I, V26I, R38K, D75E"}}}, {"name": "JN248582", "node_attrs": {"div": 0.16454999999999997, "accession": "JN248582", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2008.0}, "Strain_name": {"value": "08NG_SC13"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "T396C", "G407A", "A410G", "A426C", "G428A", "G455A", "T486C", "A519G", "G520A", "A529G", "A548G", "A585G", "C586T", "T602C", "A604G", "G641T", "G671A", "G675A", "A684C", "-696A", "T731C", "C771T", "T782C", "C827T", "C905A", "C1088T", "C1103T", "T1118G", "G1139A", "T1271G", "C1331T", "C1342G", "C1403T", "C1406T", "G1498A", "G1577A", "G1619A", "T1646C", "G1661T", "G1697A", "G1720A", "T1723-", "C1724-", "G1725-", "-1733G", "-1735A", "A1759G", "G1771A", "A1775G", "-1782A", "C1986T", "G2056A", "T2101C", "G2182A", "A2210G", "A2273G", "G2317A", "G2362A", "C2452T", "G2459A", "A2462G", "A2560G", "A2614G", "A2617G", "G2641A", "A2674G", "C2684A", "C2694A", "G2712A", "G2725A", "C2740T", "A2755G", "G2761A", "T2779C", "T2854A", "C2885T", "G2902A", "C2909G", "G2926A", "G2950A", "A2959C", "G3004A", "G3010A", "A3027G", "C3097T", "G3229A", "A3230G", "A3238G", "T3262C", "C3399T", "T3469A", "C3496T", "T3535C", "A3543T", "C3554A", "C3577T", "A3604G", "A3808G", "A3866G", "A3876G", "A3880G", "G3919A", "A3985G", "C3995A", "G3997A", "G4019A", "C4021T", "C4141A", "G4156A", "A4243G", "T4321C", "G4354A", "C4540T", "A4555G", "G4582A", "A4598G", "A4632C", "G4677A", "A4693G", "T4706C", "G4727A", "G4786T", "C4805T", "C4937A", "A4968T", "C5041T", "C5050G", "A5061G", "G5086A", "A5090G", "A5128G", "A5140G", "T5162C", "A5185G", "T5203C", "T5228C", "A5335G", "A5355G", "C5358A", "C5384T", "T5397C", "G5427A", "A5431C", "T5436A", "G5482T", "T5483G", "T5484G", "A5548G", "T5554C", "G5561A", "T5568C", "C5572A", "A5601G", "T5602C", "A5613G", "T5628A", "C5641T", "A5712G", "A5729G", "G5730T", "C5734G", "C5763T", "G5775A", "T5787-", "A5788-", "C5789-", "A5790-", "G5791-", "A5796-", "-5799T", "T5801C", "G5802A", "C5805G", "A5806G", "T5807A", "G5808A", "G5809T", "-5811G", "-5813C", "-5814A", "-5815A", "-5817G", "-5818C", "-5820T", "T5851C", "C5958A", "A5965G", "C5974A", "C5989T", "A5995G", "G6035A", "A6044C", "-6173A", "-6174A", "-6175T", "A6176T", "A6177G", "-6179A", "-6180A", "T6181C", "C6183G", "A6186C", "A6188G", "C6190G", "T6193C", "G6195A", "T6196C", "-6198G", "-6201C", "-6202T", "-6203G", "-6204G", "-6205G", "-6206A", "-6207C", "A6208C", "T6213C", "A6214C", "-6215A", "T6216A", "-6218A", "A6221C", "A6233C", "A6273G", "A6282T", "A6304G", "C6305G", "A6316G", "C6336G", "C6412T", "C6469T", "C6477A", "A6571G", "A6573G", "A6599T", "T6618C", "A6692G", "G6718A", "T6760C", "T6766G", "A6773G", "A6785T", "A6786G", "G6802A", "C6810T", "A6818C", "A6822T", "G6823A", "A6824C", "T6825A", "C6826A", "T6829G", "-6830G", "-6831G", "C6862T", "A6887T", "A6889C", "A6905G", "T6932A", "-6962A", "-6963G", "-6964T", "-6965A", "-6966C", "-6967A", "-6968T", "-6969T", "-6970G", "-6982G", "-6983C", "-6984T", "-6985T", "-6986A", "-6987A", "-6992A", "-6994T", "G6998A", "A6999G", "-7000T", "G7026A", "G7058A", "T7059C", "G7060T", "G7094A", "G7123A", "A7154G", "G7160C", "T7213C", "T7217C", "G7225A", "A7294G", "G7303A", "G7315A", "A7339G", "G7366A", "C7498T", "G7517C", "C7699T", "G7701A", "G7735A", "C7762T", "A7763C", "T7774C", "C7801A", "A7818G", "T7825C", "T7843C", "A7935C", "C7951A", "A7974G", "G7977A", "G8017T", "A8018G", "A8029G", "G8030A", "C8033A", "C8037T", "C8048G", "G8079T", "A8118C", "G8134C", "G8135A", "G8137C", "T8138C", "G8139T", "G8140C", "G8141C", "C8146A", "C8149G", "T8153C", "A8154T", "T8155G", "C8156G", "C8189A", "C8213T", "T8223C", "C8232T", "T8292G", "C8296T", "G8308A", "C8320G", "T8321G", "T8322C", "C8323A", "G8349A", "C8384T", "G8387A", "C8406A", "A8409G", "C8412G", "A8426G", "T8444A", "G8476C", "T8483C", "C8503A", "A8525G", "C8526G", "G8528A", "A8531T", "T8534A", "G8537A", "T8584A", "T8600C", "A8643G", "C8655A", "C8666A", "A8678C", "C8723T", "A8784C", "C8859A", "A8864T", "A8874G", "T8903C", "G8915A", "G8917A", "G8933A", "C8934A", "T8935A", "G8945T", "G8955A", "G8991A", "C8993T", "T8994G", "G8997-", "T9040C", "A9099G", "G9135A"], "INT": ["I31V", "K34R", "L74I", "G82S", "M275V", "D286A"], "RT-p51": ["T39A", "I60V", "E122K", "S123D", "T173M", "Q197K", "A200E", "R206K", "P272A", "K311R", "S379G", "P435L"], "RT-p66": ["T39A", "I60V", "E122K", "S123D", "T173M", "Q197K", "A200E", "R206K", "P272A", "K311R", "S379G", "P435L", "Q483L", "Q487K"], "gp120": ["T35N", "V61I", "T64P", "-109S", "N111G", "-112T", "-114S", "-116G", "-117T", "K140R", "K143I", "L151V", "T161S", "T208K", "E240G", "I249F", "I255T", "R280G", "D294A", "N304K", "K307G", "T308A", "N311W", "-312E", "A319V", "K322Q", "E323V", "V324Q", "-326G", "S337A", "T345S", "R351G", "S360T", "-365N", "-373S", "-374T", "-375L", "-376E", "-377L", "-378N", "-379N", "-380T", "-381S", "-382N", "-383G", "-385T", "R391K", "V402T", "D414N", "N435D", "N437H"], "gp41": ["V72L", "S133N", "K154Q", "N166K", "K172R", "H211P", "E224G", "G225E", "S239G", "A243T", "L244I", "A245V", "L249V", "R259L", "E272A", "G278S", "W279L", "E280Q", "Y284L", "L285V", "L296I", "L304F", "V307T", "A310V", "L330R", "F340A"], "nef": ["G3S", "Q22K", "T23A", "T25A", "S45T", "A54D", "Q62E", "E63D", "D64E", "F81Y", "I101V", "Q105K", "D108E", "Q173M", "E174D", "R178G", "R192K", "L198K", "E201D", "D205N"], "p1": ["K10N"], "p17": ["M31L", "K62E", "Q65R", "T84V", "Q90R", "E102D", "K110N", "E114K", "K117Q"], "p24": ["I129M", "D180E", "A204G"], "p6": ["S14N", "F15W", "G16F", "F17G", "G18-", "I21E", "A22M", "K27R", "R31K"], "p7": ["R11K", "W37*"], "pro": ["N37D", "P63L"], "rev": ["V16I", "I18T", "E57W", "S61D", "T62D", "P67R", "R90S", "G96Q", "V97P", "G98P", "P100T", "Q101E", "I102T", "S103G", "T114N"], "tat": ["P3L", "K19Q", "V36W", "T58A", "S60P", "S62N", "Q66K", "T76P", "P81Q"], "vif": ["M16L", "K36R", "R67I", "I128L", "A152V", "T155R", "K158R", "I159V", "R167K", "K181R", "E185G"], "vpr": ["Q77R", "S84D", "P85T"], "vpu": ["K41S", "L43V", "D60E", "T61L", "E62A", "E63K", "A65V", "T66D", "L67F", "-68D", "V69-", "D70-", "M71-", "V72-", "D73-", "F74-", "D75-"]}, "labels": {"aa": "INT: I31V, K34R, L74I, G82S, M275V, D286A; RT-p51: T39A, I60V, E122K, S123D, T173M, Q197K, A200E, R206K, P272A, K311R, S379G, P435L; RT-p66: T39A, I60V, E122K, S123D, T173M, Q197K, A200E, R206K, P272A, K311R, S379G, P435L, Q483L, Q487K; gp120: T35N, V61I, T64P, -109S, N111G, -112T, -114S, -116G, -117T, K140R, K143I, L151V, T161S, T208K, E240G, I249F, I255T, R280G, D294A, N304K, K307G, T308A, N311W, -312E, A319V, K322Q, E323V, V324Q, -326G, S337A, T345S, R351G, S360T, -365N, -373S, -374T, -375L, -376E, -377L, -378N, -379N, -380T, -381S, -382N, -383G, -385T, R391K, V402T, D414N, N435D, N437H; gp41: V72L, S133N, K154Q, N166K, K172R, H211P, E224G, G225E, S239G, A243T, L244I, A245V, L249V, R259L, E272A, G278S, W279L, E280Q, Y284L, L285V, L296I, L304F, V307T, A310V, L330R, F340A; nef: G3S, Q22K, T23A, T25A, S45T, A54D, Q62E, E63D, D64E, F81Y, I101V, Q105K, D108E, Q173M, E174D, R178G, R192K, L198K, E201D, D205N; p1: K10N; p17: M31L, K62E, Q65R, T84V, Q90R, E102D, K110N, E114K, K117Q; p24: I129M, D180E, A204G; p6: S14N, F15W, G16F, F17G, G18-, I21E, A22M, K27R, R31K; p7: R11K, W37*; pro: N37D, P63L; rev: V16I, I18T, E57W, S61D, T62D, P67R, R90S, G96Q, V97P, G98P, P100T, Q101E, I102T, S103G, T114N; tat: P3L, K19Q, V36W, T58A, S60P, S62N, Q66K, T76P, P81Q; vif: M16L, K36R, R67I, I128L, A152V, T155R, K158R, I159V, R167K, K181R, E185G; vpr: Q77R, S84D, P85T; vpu: K41S, L43V, D60E, T61L, E62A, E63K, A65V, T66D, L67F, -68D, V69-, D70-, M71-, V72-, D73-, F74-, D75-"}}}]}, {"name": "G_NODE_0000037", "node_attrs": {"div": 0.12588, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C767T", "A1077G", "G1472A", "G1526A", "G2332A", "C2353T", "A2422G", "C3095T", "T3096C", "C4540T", "A4858T", "C5221T", "A5621T", "G5784A", "-6205G", "-6206G", "-6207G", "T6210C", "-6220A", "A6327G", "A6617G", "C6777A", "A6779C", "G6788A", "-6806G", "G6935A", "-6947A", "-6949A", "-6950T", "-6951C", "T6988-", "-7005A", "C7087T", "-7164A", "T7913C", "A7964G", "T8171G", "C8293T", "C8323G", "C8494A", "A8652C", "A8701T", "G8732A", "G8933A", "G8936A"], "RT-p51": ["L334S"], "RT-p66": ["L334S"], "gp120": ["-112V", "I255V", "T308E", "G361R"], "gp41": ["R221G", "F340L"], "nef": ["T51N", "K104Q", "Y120F", "L198Q"], "p17": ["E42D"], "p24": ["I15L", "T116A"], "rev": ["K39R"], "vif": ["I31V", "Q91L"], "vpu": ["E5V"]}, "labels": {"aa": "RT-p51: L334S; RT-p66: L334S; gp120: -112V, I255V, T308E, G361R; gp41: R221G, F340L; nef: T51N, K104Q, Y120F, L198Q; p17: E42D; p24: I15L, T116A; rev: K39R; vif: I31V, Q91L; vpu: E5V"}}, "children": [{"name": "KX389626", "node_attrs": {"div": 0.16398, "accession": "KX389626", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09NG010261"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "G424A", "G455A", "G461C", "G495A", "A516C", "G520A", "G534A", "C535G", "T536C", "T560A", "T571A", "T655G", "A677G", "G697-", "T698-", "A699-", "A700-", "A701-", "G702-", "A703-", "A704-", "A705-", "A706-", "T707-", "G712A", "G755A", "C771T", "A774T", "A839G", "T917C", "T1004G", "G1064A", "G1090A", "A1127G", "C1136T", "G1232A", "G1247A", "A1263T", "T1280C", "A1355G", "C1362T", "A1415G", "G1419A", "T1422C", "T1427A", "T1446A", "G1449A", "A1463T", "A1474G", "T1574C", "G1588A", "A1642G", "T1682C", "C1692A", "A1701T", "C1706A", "C1712T", "T1728-", "T1729-", "C1730-", "G1731-", "G1732-", "G1734-", "G1736-", "G1737-", "A1738-", "G1739-", "A1740-", "T1741-", "A1742-", "G1743-", "C1744-", "C1745-", "C1749-", "C1750-", "C1751-", "T1752-", "C1753-", "C1754-", "C1755-", "C1756-", "G1757-", "A1758-", "A1759-", "G1760-", "C1761-", "A1762-", "G1763-", "A1770G", "A1775G", "-1782A", "C1795T", "A1990G", "G2002A", "A2029C", "T2116A", "C2149T", "A2154G", "G2155A", "A2329G", "C2420T", "G2447A", "G2459C", "C2485T", "A2498G", "G2583C", "T2608C", "C2613T", "G2704A", "G2725A", "A2727G", "T2735C", "C2740T", "A2767G", "C2839A", "A2845C", "C2857T", "G2902A", "C2909T", "A2920G", "A2925G", "C2960T", "C2978T", "G2984A", "A2985C", "A2995G", "C3067T", "G3080A", "G3142A", "A3192G", "A3193G", "A3218G", "G3229A", "A3264G", "C3266T", "T3355C", "C3399T", "A3442C", "G3457A", "A3477G", "A3481T", "A3524G", "A3529G", "T3566G", "G3595A", "A3616G", "C3649T", "G3667A", "C3668T", "A3676T", "A3703G", "A3727G", "A3739G", "A3781G", "T3799G", "A3808G", "G3825A", "A3866G", "G3925A", "A3952T", "T3962C", "T3977C", "C3994T", "C4021T", "C4042T", "T4079C", "C4149T", "G4228A", "A4255G", "G4264A", "A4279G", "A4369G", "G4372A", "A4397T", "A4455T", "A4643G", "T4674C", "G4696A", "C4697G", "T4761G", "T4769G", "A4781G", "A4816G", "G4818A", "A4819G", "T4832C", "C4833A", "G4839A", "T4840C", "C4889T", "C4914T", "A4967G", "A4988G", "A4993C", "G4995T", "G5065A", "G5179A", "A5200G", "G5289A", "C5294T", "A5356T", "T5391C", "C5445T", "A5448C", "C5491T", "C5538G", "G5561A", "A5574G", "C5584T", "G5599T", "T5600-", "A5601-", "T5602-", "A5622C", "A5640G", "A5644G", "A5677T", "A5693G", "A5711G", "G5730A", "-5792C", "-5793A", "-5794A", "-5795C", "-5797C", "-5799T", "-5811G", "G5845A", "A5867G", "T5911C", "A5947G", "G6028A", "G6055A", "T6151C", "A6159C", "-6179G", "-6180T", "T6181C", "A6182T", "T6187G", "C6189A", "A6192G", "G6195C", "A6197-", "T6199-", "A6200-", "-6215C", "-6218G", "-6222C", "A6225G", "A6226C", "G6234A", "A6265T", "G6280A", "A6282C", "G6292A", "A6304G", "G6313A", "A6316T", "C6317T", "A6330G", "A6338T", "G6339C", "G6379A", "T6395A", "G6457A", "A6464G", "A6484G", "C6548T", "A6573G", "A6577T", "T6586C", "G6605A", "G6638C", "A6644G", "G6647C", "A6684G", "A6706C", "A6716G", "C6717T", "T6733A", "A6754G", "C6758T", "A6765C", "G6774A", "A6780G", "A6781G", "G6790C", "C6797A", "A6801T", "A6808G", "G6809A", "G6821A", "A6822G", "A6843G", "T6844C", "C6849T", "A6855G", "G6863A", "A6907G", "-6948C", "-6952A", "-6953A", "-6954T", "-6955A", "-6956T", "-6957T", "-6958G", "-6962A", "-6963G", "-6964T", "-6965A", "-6966C", "-6967C", "-6968T", "-6993C", "-6994T", "-6995A", "-6996A", "-6997T", "-7000T", "T7009C", "C7014T", "A7069G", "T7127C", "A7149G", "T7150G", "A7157T", "G7160A", "A7161C", "-7165C", "A7177G", "A7224G", "A7232G", "A7256G", "C7289A", "A7290G", "G7291C", "C7313A", "T7618C", "G7628A", "A7660G", "G7673A", "G7717A", "A7722C", "T7774C", "A7782C", "A7799C", "A7822C", "G7995A", "A8029G", "G8030T", "G8032A", "C8038T", "C8065T", "C8080A", "C8092A", "A8093C", "C8103T", "G8105A", "G8114A", "T8115C", "G8134C", "G8137T", "T8155C", "A8163G", "G8180A", "A8222C", "G8234A", "T8235C", "C8242T", "T8279G", "C8296T", "G8304C", "C8320T", "G8349A", "T8366C", "A8378G", "C8384A", "G8387A", "C8488T", "-8492T", "C8499G", "T8501A", "A8519G", "A8555G", "C8594A", "T8675C", "A8678G", "G8798A", "G8799A", "G8808A", "C8809A", "A8812G", "T8843C", "T8860A", "G8871C", "G8875A", "T8903C", "T8935G", "A8947T", "C8960T", "T8994G", "A8998-", "G9005A", "C9012T", "C9014T"], "INT": ["S17N", "I31V", "M50I", "T112I", "T125V", "I208L", "Y227F"], "RT-p51": ["K20R", "V118I", "E122Q", "I135V", "S163T", "T173I", "K211R", "F214L", "D248E", "E250D", "P272S", "K277R", "E297T", "V329I", "K366R", "I375V", "K390R", "Q428R", "P435L"], "RT-p66": ["K20R", "V118I", "E122Q", "I135V", "S163T", "T173I", "K211R", "F214L", "D248E", "E250D", "P272S", "K277R", "E297T", "V329I", "K366R", "I375V", "K390R", "Q428R", "P435L", "E449D", "K461R", "T477A", "S491A", "K527N"], "gp120": ["N5D", "M67I", "N102T", "N105-", "V106-", "N107-", "N108-", "T110-", "-114V", "R127K", "K143T", "P155S", "N158G", "N159S", "S181T", "N204D", "E240G", "E241D", "D251N", "E262Q", "I264V", "E265Q", "K277R", "T288V", "D294E", "H302Y", "N304T", "K309R", "-312N", "T313M", "Q315K", "K316M", "A319T", "E323R", "V324I", "N330S", "T332I", "N334S", "S337T", "-366T", "-367S", "-368I", "-369L", "-370S", "-371E", "-372N", "-374T", "-375S", "-376N", "-377D", "-378N", "-384D", "-385T", "T387I", "N432R", "N435Y", "K457R", "I460V", "I468V", "Q479S"], "gp41": ["L4M", "V124I", "N140T", "N160T", "N166H", "A243S", "F263L", "I264L", "A267V", "A268T", "V271T", "N287S", "G293S", "V307L", "V311T", "C326G", "R334T"], "nef": ["G3S", "A49V", "Q50H", "P53A", "V153I", "A156N", "N157S", "D177H", "R178K", "Q198R", "Y202F"], "p1": ["K4R"], "p17": ["R30K", "A54T", "M61L", "A67S", "F79Y", "I107R", "K110N", "S121-", "K122-", "E123-", "N124-", "S126N"], "p2": ["S8T", "G9S"], "p24": ["I91M", "S120N", "T178S", "V230I"], "p6": ["P5T", "T8S", "F17-", "G18-", "E20-", "I21-", "A22-", "P24-", "S25-", "K27-", "Q28-", "R31G", "A39V"], "p7": ["K3R", "R41K"], "pro": ["N37D", "I64M"], "rev": ["T8S", "V16I", "K20R", "S61V", "L78I", "H82T", "S86N", "S89N", "G96Q", "V97S", "S103P", "G111E"], "tat": ["K24N", "H54Q", "S62N", "P70S"], "vif": ["Y30H", "G37E", "L59V", "D61E", "K77R", "D78S", "H83N", "V85T", "H110Y", "E117D", "Q136P", "A137S", "R160K"], "vpr": ["R62K", "S84I", "S96P"], "vpu": ["I13V", "T24S", "E29G", "K35R", "D80N"]}, "labels": {"aa": "INT: S17N, I31V, M50I, T112I, T125V, I208L, Y227F; RT-p51: K20R, V118I, E122Q, I135V, S163T, T173I, K211R, F214L, D248E, E250D, P272S, K277R, E297T, V329I, K366R, I375V, K390R, Q428R, P435L; RT-p66: K20R, V118I, E122Q, I135V, S163T, T173I, K211R, F214L, D248E, E250D, P272S, K277R, E297T, V329I, K366R, I375V, K390R, Q428R, P435L, E449D, K461R, T477A, S491A, K527N; gp120: N5D, M67I, N102T, N105-, V106-, N107-, N108-, T110-, -114V, R127K, K143T, P155S, N158G, N159S, S181T, N204D, E240G, E241D, D251N, E262Q, I264V, E265Q, K277R, T288V, D294E, H302Y, N304T, K309R, -312N, T313M, Q315K, K316M, A319T, E323R, V324I, N330S, T332I, N334S, S337T, -366T, -367S, -368I, -369L, -370S, -371E, -372N, -374T, -375S, -376N, -377D, -378N, -384D, -385T, T387I, N432R, N435Y, K457R, I460V, I468V, Q479S; gp41: L4M, V124I, N140T, N160T, N166H, A243S, F263L, I264L, A267V, A268T, V271T, N287S, G293S, V307L, V311T, C326G, R334T; nef: G3S, A49V, Q50H, P53A, V153I, A156N, N157S, D177H, R178K, Q198R, Y202F; p1: K4R; p17: R30K, A54T, M61L, A67S, F79Y, I107R, K110N, S121-, K122-, E123-, N124-, S126N; p2: S8T, G9S; p24: I91M, S120N, T178S, V230I; p6: P5T, T8S, F17-, G18-, E20-, I21-, A22-, P24-, S25-, K27-, Q28-, R31G, A39V; p7: K3R, R41K; pro: N37D, I64M; rev: T8S, V16I, K20R, S61V, L78I, H82T, S86N, S89N, G96Q, V97S, S103P, G111E; tat: K24N, H54Q, S62N, P70S; vif: Y30H, G37E, L59V, D61E, K77R, D78S, H83N, V85T, H110Y, E117D, Q136P, A137S, R160K; vpr: R62K, S84I, S96P; vpu: I13V, T24S, E29G, K35R, D80N"}}}, {"name": "G_NODE_0000038", "node_attrs": {"div": 0.15098, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["T163A", "G206A", "-217C", "G256A", "-304C", "-305T", "G461T", "G520C", "G527A", "A619G", "G671A", "C679A", "G690A", "-696G", "T698C", "A774C", "A866G", "G992A", "G1067A", "A1101G", "A1205G", "A1265C", "G1339A", "G1350A", "A1359T", "G1442A", "A1476G", "A1493G", "A1529G", "G1553A", "G1619A", "T1646C", "A1687G", "A1715G", "A1719T", "-1733A", "-1735A", "C1755G", "A1759G", "-1782T", "A1790C", "C1826T", "G1907A", "C1986T", "T2080C", "T2101A", "T2104C", "G2113A", "A2119C", "T2215C", "G2317A", "G2389T", "A2617C", "G2683A", "A2713G", "T2770C", "T2776C", "A2836T", "C2848T", "A2872G", "G2950A", "G2951A", "A2992T", "T3002C", "G3010A", "A3265G", "T3334A", "T3466C", "G3523A", "T3535C", "A3574C", "C3734A", "G3846A", "G3859A", "A4057G", "A4071T", "T4192C", "A4293G", "T4405C", "C4428T", "A4495G", "G4549A", "G4573A", "C4652T", "A4688G", "G4735A", "G4765A", "G4786A", "C4826T", "G4856A", "T4891A", "A4900G", "C4937A", "T4938G", "G4953A", "C4978A", "A5007C", "G5086A", "A5159G", "A5176G", "C5214T", "A5335G", "T5354C", "C5359T", "A5366G", "T5397C", "G5418A", "G5421A", "C5469T", "T5554C", "G5629T", "T5670G", "A5689C", "A5729G", "C5734A", "A5751C", "C5763T", "A5781G", "T5801C", "C5805A", "A5806C", "T5810-", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821T", "-5822T", "-5823G", "-5824G", "C5924T", "A5935T", "T5944C", "A5957G", "C5958A", "T5959G", "A6023C", "C6045A", "C6139T", "-6173A", "-6174A", "T6178C", "-6179A", "A6188G", "-6198G", "-6201A", "-6202T", "G6211T", "A6212G", "-6215A", "-6222T", "A6263C", "A6281C", "C6318A", "G6326A", "T6328C", "T6340C", "A6403C", "T6446C", "A6489G", "T6511C", "A6616G", "G6628A", "T6643A", "A6685G", "G6732A", "A6757T", "T6792C", "A6796G", "G6802A", "A6824G", "T6860A", "A6937G", "A6959-", "A6960-", "T6961-", "-7000A", "C7016A", "A7063G", "T7096A", "G7147T", "A7155C", "T7162A", "-7165T", "G7168A", "G7182C", "G7303A", "C7344T", "T7403C", "G7456A", "A7459G", "G7465C", "G7517A", "A7519G", "G7552A", "T7630G", "G7633A", "A7655C", "G7677A", "A7734G", "C7747A", "G7753A", "A7818G", "A7820C", "A7885C", "C7960A", "G7987A", "C7988A", "G8143A", "G8181T", "G8194A", "A8196T", "A8222G", "G8254A", "T8281C", "A8288T", "G8330A", "C8331T", "T8332G", "T8366G", "C8369A", "T8371C", "T8374C", "A8396G", "T8414C", "T8501C", "A8558C", "G8588A", "G8590A", "T8600C", "C8666T", "A8678T", "A8739G", "C8740T", "A8844G", "C8859A", "A8864G", "G8865A", "T8935A", "G8954A", "T9054G"], "INT": ["S24N", "Y99F", "T125A", "K173R", "T218I"], "RT-p51": ["K174N", "A286T", "D413E"], "RT-p66": ["K174N", "A286T", "D413E", "Q547K"], "gp120": ["T35E", "T57P", "T64N", "-109S", "-114S", "-115S", "-117R", "-118N", "-119C", "-120T", "-121M", "K123M", "G124E", "I137L", "K143Q", "P155Q", "N158S", "E183D", "G293D", "D294I", "K309Q", "-312K", "-326S", "N327K", "S336T", "L388I", "D414E", "T436E", "G443A"], "gp41": ["A14V", "V72M", "N109E", "I118L", "S125N", "K144R", "D148E", "K172R", "I173L", "Q229E", "K231R", "G293V", "N298I", "I329L", "A343I"], "nef": ["S8R", "S9R", "I10T", "V11A", "G83A", "T133V", "I168V", "Q173M", "D175N"], "p17": ["K62T", "K95R", "T115K", "A119T", "S121G"], "p24": ["I124V", "R203K", "A207T", "T210S"], "p6": ["N3S", "S14C", "-19E", "-26A", "K27R", "T35S"], "p7": ["S4G"], "pro": ["P63L"], "rev": ["A47K", "T62A", "F73L", "G99R", "E116N"], "tat": ["S60P", "P84Q"], "vif": ["R50K", "G60E", "R67K", "L102Q", "Q105R", "S118A", "A123T", "P131H", "K141Q", "R167K"], "vpr": ["T19A", "P37L", "Q77R", "S84N"], "vpu": ["A8S", "I28L", "K41R", "L43I", "E48D", "T66K", "V72L"]}, "labels": {"aa": "INT: S24N, Y99F, T125A, K173R, T218I; RT-p51: K174N, A286T, D413E; RT-p66: K174N, A286T, D413E, Q547K; gp120: T35E, T57P, T64N, -109S, -114S, -115S, -117R, -118N, -119C, -120T, -121M, K123M, G124E, I137L, K143Q, P155Q, N158S, E183D, G293D, D294I, K309Q, -312K, -326S, N327K, S336T, L388I, D414E, T436E, G443A; gp41: A14V, V72M, N109E, I118L, S125N, K144R, D148E, K172R, I173L, Q229E, K231R, G293V, N298I, I329L, A343I; nef: S8R, S9R, I10T, V11A, G83A, T133V, I168V, Q173M, D175N; p17: K62T, K95R, T115K, A119T, S121G; p24: I124V, R203K, A207T, T210S; p6: N3S, S14C, -19E, -26A, K27R, T35S; p7: S4G; pro: P63L; rev: A47K, T62A, F73L, G99R, E116N; tat: S60P, P84Q; vif: R50K, G60E, R67K, L102Q, Q105R, S118A, A123T, P131H, K141Q, R167K; vpr: T19A, P37L, Q77R, S84N; vpu: A8S, I28L, K41R, L43I, E48D, T66K, V72L"}}, "children": [{"name": "EU786670", "node_attrs": {"div": 0.16163, "accession": "EU786670", "clade_membership": {"value": "G"}, "country": {"value": "ES"}, "date": {"value": 2005.0}, "Strain_name": {"value": "P962"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "G632A", "C672A", "C688T", "C748T", "A836G", "A1002T", "G1090A", "A1241G", "G1313A", "T1446A", "G1731A", "A2239C", "A2241G", "C2386T", "G2459A", "G2463A", "G2704A", "C2831T", "A2923G", "G3211A", "A3217G", "C3517T", "G3694A", "A3703G", "G3816A", "C3908T", "T3976C", "A4111G", "A4130G", "G4366A", "A4693G", "A4717T", "G4861A", "C5227A", "T5621C", "G5791-", "A5796-", "T5798-", "C5801A", "A5805G", "C5806T", "-5810C", "-5811A", 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["H45Y"], "vpu": ["F16G", "D60E"]}, "labels": {"aa": "RT-p51: T173A, P272Q, D324E, Q428R; RT-p66: T173A, P272Q, D324E, Q428R, K461R; gp120: -110T, E183D, D251N, I264V, N272G, K277R, -322K, -327N, -382G, N433-; gp41: Q119E, S165T; nef: T51N, Q105K, D108E, K158T, I168V; p17: I60L, I75L, E102D, E103K; p24: T116A; p6: A39T; p7: S4G; rev: K20R; vif: R50K, K141Q; vpr: H45Y; vpu: F16G, D60E"}}, "children": [{"name": "KX389628", "node_attrs": {"div": 0.17689999999999997, "accession": "KX389628", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09NG010205"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "G378T", "G424A", "A426C", "T435A", "C456T", "G461A", "C485T", "T503A", "G518A", "A519G", "G527A", "C531T", "G534A", "C540A", "A541G", "G542C", "A549T", "G554A", "A569G", "G579A", "A584C", "C590T", "A592G", "T593G", "A604G", "G614A", "G615A", "T635C", "C636T", "G645A", "G647A", "A650G", 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"-68V", "V69D", "D70F", "M71D", "V72A", "D73-", "F74-", "D75-", "P76-"]}, "labels": {"aa": "INT: S17N, I31V, K111Q, K211R, Q252K; RT-p51: T39L, I135V, S162C, K174N, I195L, K211R, Q245T, D248Q, S251N, Q278N, P321S, E370D, V371L, A376S, T377R; RT-p66: T39L, I135V, S162C, K174N, I195L, K211R, Q245T, D248Q, S251N, Q278N, P321S, E370D, V371L, A376S, T377R, K527N; gp120: A2T, N4S, D19E, D21Y, K37S, D50N, N52D, -57Y, V106A, K107T, -109R, -111D, -112T, -113N, -114C, -115T, -116T, D139N, K141Q, K143A, K150R, L151S, N158D, S161T, R164M, K212N, S216T, R245K, I255V, E265Q, Y290F, D294E, D297N, H302R, V305I, K307F, T308S, K309Q, -312N, -318E, -319E, -320K, -324V, T332S, -365F, -366N, -367R, -383K, D384E, -385N, R391K, R401K, N414E, N432T, N435R, N437D, I460V, L466I, K472N; gp41: V72I, Y75F, L91I, D113G, S125N, N140T, D148E, D163E, N166Q, I177V, T208N, L209P, T210Y, H211P; nef: G3S, S9K, I10V, V11A, I20L, Q22K, E63D, R71K, G83A, N116H, Y120F, P129S, T138C, F143Y, V153I, T158A, M173V; p17: A15S, R30K, M31L, L34I, M61I, K62E, P66S, A67T, Q69S, T72S, V82I, Y86W, Q90R, V94I, V104I, K106E, S111A, Q112K, Q113H, E114K, K117Q, T120A, S121A, K122T, G123V, V128-; p2: N9T, A12-; p24: L83I, I96L, E98D, S120N, E128D, N183A, S225G, V230I; p6: R31K, *50W; p7: P9Q; pro: D37N, Q61E, P63L; rev: V16A, N26K, Y28L, P30I; tat: P3L, N7K, K19Q, P70S, P73T, P75T, T76H, T77P; vif: I31V, Y44F, S52A, K63R, K122T, Q136P, K155Q, K176R, H192R; vpr: N28T, N48H, E55A, I60L, T84S, P85L; vpu: Q2S, E5T, A7V, F27L, I33L, T61L, E62S, E63T, A65V, T66D, L67M, -68V, V69D, D70F, M71D, V72A, D73-, F74-, D75-, P76-"}}}, {"name": "MT349406", "node_attrs": {"div": 0.17897, "accession": "MT349406", "clade_membership": {"value": "G"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10CMLB030"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "-217C", "G247A", "A388G", "T396C", "A419G", "A437G", "G438A", "A492T", "T503G", "C507A", "A519C", "T536A", "C537A", 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"T9019-", "G9020-", "G9021-", "G9022-", "A9023-", "G9024-", "G9025-", "G9026-", "A9027-", "C9028-", "T9029-", "G9030-", "G9031-", "G9032-", "G9033-", "A9034-", "G9035-", "T9036-", "G9037-", "G9038-", "C9039-", "T9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "A9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "T9060-", "A9061-", "A9062-", "G9063-", "C9064-", "A9065-", "G9066-", "C9067-", "C9068-", "G9069-", "C9070-", "T9071-", "T9072-", "C9073-", "T9074-", "C9075-", "G9076-", "C9077-", "C9078-", "T9079-", "G9080-", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "T9095-", "G9096-", "T9097-", "T9098-", "A9099-", "G9100-", "A9101-", "C9102-", "C9103-", "A9104-", "G9105-", "A9106-", "T9107-", "T9108-", "T9109-", "G9110-", "A9111-", "G9120-", "C9123T"], "INT": ["R20K", "K111T", "T125A", "D167E", "T218I"], "RT-p51": ["V21I", "V106I", "E122K", "S123E", "I309T", "S322E", "K366R", "S379G", "V386I", "E396D", "V400T", "E404D", "D413E", "G436N"], "RT-p66": ["V21I", "V106I", "E122K", "S123E", "I309T", "S322E", "K366R", "S379G", "V386I", "E396D", "V400T", "E404D", "D413E", "G436N", "Q524E", "E529D"], "gp120": ["S1K", "N4E", "D21N", "K31R", "T35E", "-57L", "P64T", "N70S", "-109D", "-111N", "N132Y", "I133V", "I137L", "R138Q", "K140R", "V154E", "N158G", "N160S", "N167S", "N169K", "V170T", "I173T", "S181N", "D202E", "K212R", "V226G", "S236P", "E240G", "V243M", "I244V", "N248D", "I255T", "V258I", "E262K", "N274Y", "I279V", "-282G", "-283I", "P285R", "D294K", "Q300L", "-312T", "-318K", "-319A", "-320R", "-324I", "F325L", "N328I", "K329S", "N334A", "S335P", "S336H", "L341P", "T345M", "N349I", "Y356F", "G361R", "-374T", "-375S", "-376S", "-377W", "-378N", "-379D", "-380T", "-381E", "-383D", "-385T", "I395F", "G431V", "N432V", "-433M", "T436D", "N437T", "E438D", "T439I", "K472R", "R476V", "Q479K"], "gp41": ["R46K", "Y108F", "S125G", "S133R", "I135L", "N140I", "A151S", "K154S", "A156T", "S157N", "N160S", "D163S", "N166K", "M176I", "S239N", "A243P", "F263L", "I264L", "A267V", "T270L", "V271L", "W286G", "L288I", "L304V", "I307L", "A312G", "L330C", "L340A", "R342K", "L345N"], "nef": ["S8N", "E15R", "Q50A", "Q62E", "G83E", "Y120I", "N126C", "A151T", "S163C", "D205N", "C206*"], "p1": ["N9H"], "p17": ["K18R", "M31I", "V35I", "T53S", "Q58K", "K62Q", "L68I", "V82L", "T84V", "R91K", "I107M", "K110N", "S121G", "K122Q", "N124-", "S125-", "S126-"], "p2": ["A10S"], "p24": ["L91I", "P92A", "T110N"], "p6": ["L1P", "N3S", "P5L", "E19-", "E20-", "P25-", "P30L", "T35I"], "p7": ["K7R", "R11K", "R41K"], "pro": ["D37E", "I82V"], "rev": ["V16I", "S61T", "S67P", "H82T", "D84N", "D88A", "S89T", "R90G", "P92S", "T94S", "G99R", "V104G", "S106H"], "tat": ["D2E", "P6S", "R57G", "S62N"], "vif": ["H48D", "L64I", "D78E", "H110Y", "S116A", "D117E", "I128V", "N140K", "K151T", "T157K", "R160K", "R167K", "G182D", "*193W"], "vpr": ["P10S", "P37V", "I61L", "S93A", "S96F"], "vpu": ["Q2H", "S3A", "I6V", "A7S", "A18T", "K32R", "K41W"]}, "labels": {"aa": "INT: R20K, K111T, T125A, D167E, T218I; RT-p51: V21I, V106I, E122K, S123E, I309T, S322E, K366R, S379G, V386I, E396D, V400T, E404D, D413E, G436N; RT-p66: V21I, V106I, E122K, S123E, I309T, S322E, K366R, S379G, V386I, E396D, V400T, E404D, D413E, G436N, Q524E, E529D; gp120: S1K, N4E, D21N, K31R, T35E, -57L, P64T, N70S, -109D, -111N, N132Y, I133V, I137L, R138Q, K140R, V154E, N158G, N160S, N167S, N169K, V170T, I173T, S181N, D202E, K212R, V226G, S236P, E240G, V243M, I244V, N248D, I255T, V258I, E262K, N274Y, I279V, -282G, -283I, P285R, D294K, Q300L, -312T, -318K, -319A, -320R, -324I, F325L, N328I, K329S, N334A, S335P, S336H, L341P, T345M, N349I, Y356F, G361R, -374T, -375S, -376S, -377W, -378N, -379D, -380T, -381E, -383D, -385T, I395F, G431V, N432V, -433M, T436D, N437T, E438D, T439I, K472R, R476V, Q479K; gp41: R46K, Y108F, S125G, S133R, I135L, N140I, A151S, K154S, A156T, S157N, N160S, D163S, N166K, M176I, S239N, A243P, F263L, I264L, A267V, T270L, V271L, W286G, L288I, L304V, I307L, A312G, L330C, L340A, R342K, L345N; nef: S8N, E15R, Q50A, Q62E, G83E, Y120I, N126C, A151T, S163C, D205N, C206*; p1: N9H; p17: K18R, M31I, V35I, T53S, Q58K, K62Q, L68I, V82L, T84V, R91K, I107M, K110N, S121G, K122Q, N124-, S125-, S126-; p2: A10S; p24: L91I, P92A, T110N; p6: L1P, N3S, P5L, E19-, E20-, P25-, P30L, T35I; p7: K7R, R11K, R41K; pro: D37E, I82V; rev: V16I, S61T, S67P, H82T, D84N, D88A, S89T, R90G, P92S, T94S, G99R, V104G, S106H; tat: D2E, P6S, R57G, S62N; vif: H48D, L64I, D78E, H110Y, S116A, D117E, I128V, N140K, K151T, T157K, R160K, R167K, G182D, *193W; vpr: P10S, P37V, I61L, S93A, S96F; vpu: Q2H, S3A, I6V, A7S, A18T, K32R, K41W"}}}]}, {"name": "G_NODE_0000042", "node_attrs": {"div": 0.12380999999999999, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G607A", "A699-", "A701-", "G941A", "A956T", "T1271A", "A1278G", "A1279G", "C1403T", "C1409T", "T1446A", "A1656C", "T1790C", "A2869G", "G3221T", "A3292C", "T3566C", "G3775A", "A3808T", "G4046A", "C4270T", "G4695A", "T4702C", "C4826A", "A4968G", "G5159A", "C5221T", "C5539A", "G5545A", "G5565A", "A5864G", "-6170A", "-6173G", "T6187G", "-6203G", "G6277A", "G6379A", "A6773G", "-6974A", "G7160A", "A7297G", "A7604G", "C8047T", "C8048G"], "INT": ["E11D", "A91T"], "RT-p51": ["E399D"], "RT-p66": ["E399D", "S491P"], "gp120": ["V106L", "L314-", "Q315-", "K316-", "V317-", "L321-", "E323-", "F325-", "S335P", "-383N"], "gp41": ["L249V", "V290L"], "p1": ["N9H"], "p17": ["R91K"], "p2": ["S8T"], "p24": ["E75D", "D180E", "N183G"], "rev": ["R17K", "S67C", "G108V"], "vif": ["F39S", "H80Q", "I128V"], "vpr": ["A19T"]}, "labels": {"aa": "INT: E11D, A91T; RT-p51: E399D; RT-p66: E399D, S491P; gp120: V106L, L314-, Q315-, K316-, V317-, L321-, E323-, F325-, S335P, -383N; gp41: L249V, V290L; p1: N9H; p17: R91K; p2: S8T; p24: E75D, D180E, N183G; rev: R17K, S67C, G108V; vif: F39S, H80Q, I128V; vpr: A19T"}}, "children": [{"name": "JN248593", "node_attrs": {"div": 0.17212, "accession": "JN248593", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09NG_SC62"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A360T", "G361C", "T396C", "A418G", "T422C", "C493G", "A494T", "A520T", "A521G", "G534T", "T536C", "C537A", "G554A", "C679A", "G702-", "G703-", "A704-", "A705-", "A706-", "T707-", "G709A", "C713T", "A758G", "G770A", "T774A", "G784A", "G785A", "A818G", "G821A", "G914A", "C988A", "C1002G", "C1005G", "T1052C", "C1088T", "G1090A", "G1109A", "G1142A", "C1175T", "C1211T", "C1235T", "G1247A", "T1296C", "G1350C", "C1439T", "A1493G", "A1496G", "G1498A", "T1511C", "G1562A", "A1588G", "G1619A", "T1653C", "A1660G", "G1661T", "T1681C", "C1688G", "C1693T", "T1712A", "A1733G", "A1781G", "-1782T", "A1819G", "C1853T", "A1915T", "A1954T", "A1968G", "A1988T", "G1991A", "G2017A", 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"-6998A", "-6999C", "-7000A", "-7001A", "-7002A", "-7003T", "-7005A", "-7006C", "-7008C", "T7009C", "C7014T", "A7015G", "G7056A", "G7060A", "C7084T", "C7089A", "A7095G", "T7130C", "C7134T", "A7135G", "G7147A", "-7162G", "-7164C", "-7165C", "G7181T", "G7182C", "C7250T", "G7254A", "A7265G", "C7266G", "G7303A", "C7313A", "G7322C", "G7340T", "G7341C", "A7373T", "T7392C", "G7428A", "C7429T", "G7465A", "T7466C", "A7492G", "G7517A", "A7519G", "A7573G", "C7576T", "C7605T", "A7620G", "G7631C", "A7666C", "C7678G", "A7690G", "G7701C", "G7709A", "T7715G", "A7741G", "A7764G", "G7765T", "A7781G", "A7791C", "A7855C", "G7857A", "T7864C", "C7874T", "A7931C", "C8026A", "G8050A", "T8097C", "T8115C", "A8142C", "G8185A", "A8208G", "C8213G", "A8222T", "C8232T", "C8238G", "T8279G", "A8288T", "C8293T", "A8294C", "A8309G", "T8321C", "A8323T", "G8347A", "G8349A", "G8350A", "A8367-", "G8368-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "T8375-", "G8376-", "G8377-", "A8378-", "A8386C", "A8396G", "A8405G", "A8407G", "T8414A", "C8415G", "G8454A", "G8459A", "A8474C", "G8487T", "C8490G", "A8492T", "C8494G", "T8495G", "T8505G", "G8506T", "A8531G", "G8537A", "G8570A", "G8590C", "T8591A", "T8644C", "A8660G", "C8675T", "T8690C", "A8744G", "C8747T", "T8766C", "G8767C", "A8774G", "A8780G", "G8787A", "G8798A", "G8799A", "G8822A", "T8847A", "G8870T", "G8875A", "G8893A", "A8894G", "G8945T", "G8955A", "C8960A", "A9042C", "C9045T", "G9137A"], "INT": ["E157K", "A169T", "N255S"], "RT-p51": ["E28K", "K32E", "T39M", "V106I", "S123N", "M178L", "E207Q", "V241I", "Q245K", "S251D", "P272S", "K311R", "P321S", "D324E", "G333E", "L334P", "D335G", "G352E", "Q367E", "A376S", "T377I", "V386I", "K390R", "R394K", "Q428R", "P435A"], "RT-p66": ["E28K", "K32E", "T39M", "V106I", "S123N", "M178L", "E207Q", "V241I", "Q245K", "S251D", "P272S", "K311R", "P321S", "D324E", "G333E", "L334P", "D335G", "G352E", "Q367E", "A376S", "T377I", "V386I", "K390R", "R394K", "Q428R", "P435A", "E449K", "D460N", "K461R", "G462E", "I467V", "L517I", "Q547K"], "gp120": ["S1N", "S3D", "N5-", "D21E", "-57G", "P64Y", "T104V", "D105T", "K107N", "-109Y", "-110T", "-111K", "-112T", "-113N", "-114Y", "-115T", "-116C", "-117E", "-122E", "-123K", "-124D", "-125K", "-126I", "K127V", "S130T", "K140R", "K141R", "Y145H", "K150R", "V154I", "N206T", "T208K", "Q210E", "K224R", "S246T", "I249S", "T250S", "D251Q", "A253T", "R276K", "K277R", "T292Q", "D297N", "K307A", "T308A", "N311K", "-312N", "-314Y", "N334S", "S336P", "S337V", "G338E", "I343V", "S360T", "-374T", "-375S", "-376G", "-377F", "-378N", "-379D", "-380T", "-381I", "-382T", "-385T", "T387M", "R401K", "A412E", "N414S", "T427M", "T436K", "N437T", "G443S", "G467E", "T471G"], "gp41": ["L4M", "V7L", "G13S", "I24L", "V30A", "S42N", "V72M", "T101V", "K106R", "E110Q", "E121D", "S125R", "S133T", "E136K", "S138A", "K154S", "N160D", "D163A", "N166K", "L184F", "R185K", "L191F", "T210P", "F241L", "L265S", "V271A", "E280A", "N302S", "L304V", "I307L", "A310V", "A312G", "C326G", "I329F", "N331H", "I336V"], "nef": ["G2E", "G3N", "S9-", "I10-", "V11-", "G12-", "E15A", "Q22R", "P25A", "A38T", "A49S", "Q50D", "T51R", "C55V", "G83A", "I101T", "C142P", "D149N", "V153I", "C169S", "E176D", "R178K", "R184K", "E201D", "D205N", "C206*"], "p1": ["S8P", "K10S"], "p17": ["K28R", "T53S", "K62M", "A67S", "L68I", "T115K", "T120N", "K122-", "G123-", "N124-", "S125-", "S126-"], "p2": ["A10S"], "p24": ["S14A", "L15I", "R18K", "L91V", "P92A", "S120N", "A207P"], "p6": ["L1P", "N3K", "P5L", "T35S", "N47S"], "p7": ["R11K"], "pro": ["K57R", "I64L", "E65K", "G78R"], "rev": ["S7T", "Y28S", "L60I", "A68T", "G113R"], "tat": ["N7K", "L8I", "W32Y", "K53N", "K63Q", "D64N", "L74F"], "vif": ["R19K", "Y30H", "K36R", "G37K", "R47K", "G60E", "I124L", "K155Q", "W174*", "H192Y"], "vpr": ["E2K", "T19I", "E21G", "N28V", "I61T", "R62K", "R86Q"], "vpu": ["V21I", "K41S", "D44N", "D80N"]}, "labels": {"aa": "INT: E157K, A169T, N255S; RT-p51: E28K, K32E, T39M, V106I, S123N, M178L, E207Q, V241I, Q245K, S251D, P272S, K311R, P321S, D324E, G333E, L334P, D335G, G352E, Q367E, A376S, T377I, V386I, K390R, R394K, Q428R, P435A; RT-p66: E28K, K32E, T39M, V106I, S123N, M178L, E207Q, V241I, Q245K, S251D, P272S, K311R, P321S, D324E, G333E, L334P, D335G, G352E, Q367E, A376S, T377I, V386I, K390R, R394K, Q428R, P435A, E449K, D460N, K461R, G462E, I467V, L517I, Q547K; gp120: S1N, S3D, N5-, D21E, -57G, P64Y, T104V, D105T, K107N, -109Y, -110T, -111K, -112T, -113N, -114Y, -115T, -116C, -117E, -122E, -123K, -124D, -125K, -126I, K127V, S130T, K140R, K141R, Y145H, K150R, V154I, N206T, T208K, Q210E, K224R, S246T, I249S, T250S, D251Q, A253T, R276K, K277R, T292Q, D297N, K307A, T308A, N311K, -312N, -314Y, N334S, S336P, S337V, G338E, I343V, S360T, -374T, -375S, -376G, -377F, -378N, -379D, -380T, -381I, -382T, -385T, T387M, R401K, A412E, N414S, T427M, T436K, N437T, G443S, G467E, T471G; gp41: L4M, V7L, G13S, I24L, V30A, S42N, V72M, T101V, K106R, E110Q, E121D, S125R, S133T, E136K, S138A, K154S, N160D, D163A, N166K, L184F, R185K, L191F, T210P, F241L, L265S, V271A, E280A, N302S, L304V, I307L, A310V, A312G, C326G, I329F, N331H, I336V; nef: G2E, G3N, S9-, I10-, V11-, G12-, E15A, Q22R, P25A, A38T, A49S, Q50D, T51R, C55V, G83A, I101T, C142P, D149N, V153I, C169S, E176D, R178K, R184K, E201D, D205N, C206*; p1: S8P, K10S; p17: K28R, T53S, K62M, A67S, L68I, T115K, T120N, K122-, G123-, N124-, S125-, S126-; p2: A10S; p24: S14A, L15I, R18K, L91V, P92A, S120N, A207P; p6: L1P, N3K, P5L, T35S, N47S; p7: R11K; pro: K57R, I64L, E65K, G78R; rev: S7T, Y28S, L60I, A68T, G113R; tat: N7K, L8I, W32Y, K53N, K63Q, D64N, L74F; vif: R19K, Y30H, K36R, G37K, R47K, G60E, I124L, K155Q, W174*, H192Y; vpr: E2K, T19I, E21G, N28V, I61T, R62K, R86Q; vpu: V21I, K41S, D44N, D80N"}}}, {"name": "G_NODE_0000043", "node_attrs": {"div": 0.14887999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C160T", "T163C", "T213G", "T214A", "-217A", "G256A", "-304T", "G315T", "G317A", "A319T", "C322A", "G354A", "C362T", "A426C", "A440C", "C456A", "G481A", "A521C", "A558C", "A562G", "G614C", "G615A", "T655G", "G675C", "C688A", "G690-", "C691-", "A692-", "T718C", "G771T", "A959G", "G977A", "T983C", "C1060A", "C1065G", "A1066C", "G1067A", "A1077G", "T1121C", "G1301A", "G1419A", "A1449C", "T1451A", "T1452G", "A1474G", "G1477A", "C1514T", "C1571A", "A1587C", "A1670G", "A1701T", "A1715G", "C1744T", "-1782A", "C1826T", "A1832C", "A1920G", "G2065A", "A2098C", "G2428A", "A2463G", "C2485T", "G2530A", "A2579G", "G2580C", "C2584T", "A2602G", "A2615G", "A2616C", "T2719C", "C2723T", "G2847T", "C2885T", "A2969G", "A2995G", "C3049T", "A3067T", "T3072C", "C3222G", "T3334G", "G3378A", "A3490G", "A3491G", "A3529G", "C3542A", "A3592G", "G3694A", "T3844C", "G3846A", "A4057G", "A4087G", "A4093T", "T4162C", "G4263C", "G4264A", "A4455T", "A4531G", "A4555G", "C4665T", "A4694C", "G4737A", "C4761T", "A4858T", "C4914T", "C4937A", "C4955A", "A5055G", "A5059G", "T5062G", "T5073C", "T5091C", "T5224C", "C5237T", "T5251C", "C5333T", "C5356T", "C5359T", "G5385A", "T5391C", "T5397C", "A5431C", "A5432G", "C5478T", "A5481G", "G5482T", "T5483A", "C5491T", "A5534G", "G5535T", "A5544C", "T5562C", "T5602A", "G5715A", "A5716C", "C5734A", "-5799T", "C5834T", "T5850C", "G5858A", "C5862T", "T5866A", "T5870C", "T5911A", "G6019A", "-6174A", "C6189A", "A6192C", "C6193T", "T6196C", "G6201A", "-6206A", "-6207C", "A6208T", "A6226G", "-6230T", "A6316G", "A6329G", "T6337C", "G6339A", "G6456A", "G6457T", "A6520G", "A6573G", "A6577T", "G6593A", "A6599C", "T6618C", "A6716T", "T6733A", "A6742G", "-6774G", "A6785C", "A6788G", "C6797G", "-6806A", "-6810A", "A6812C", "T6825C", "T6860G", "T6863C", "-6955G", "-6956T", "-6957C", "-6958T", "-6964T", "-6966A", "-6967T", "-6970G", "-6973T", "-6975A", "-6976T", "G7004-", "T7009-", "G7147T", "A7148G", "A7149G", "T7150G", "T7153C", "-7162C", "-7164A", "-7165T", "T7204C", "A7216G", "G7453A", "G7513A", "C7603T", "C7605A", "T7606A", "T7618C", "G7628A", "G7673A", "A7722C", "C7770A", "T7774C", "G7801T", "G7862A", "C7921T", "T7968C", "G7995A", "C8065T", "C8080A", "A8093G", "T8153C", "T8164C", "A8240G", "T8257C", "A8258T", "A8275G", "G8280A", "G8304C", "A8323G", "A8370G", "C8384T", "C8412T", "G8418C", "A8503C", "A8519G", "A8531C", "A8540G", "T8646C", "C8655A", "C8676T", "C8720T", "G8804A", "A8869C", "G8870A", "A8888G", "T8939C", "C8966-"], "INT": ["S24N", "T125A", "G163A", "Y227F"], "RT-p51": ["S162A", "K174A", "E207D", "S251I", "I292V", "I326T", "A376C", "D413E"], "RT-p66": ["S162A", "K174A", "E207D", "S251I", "I292V", "I326T", "A376C", "D413E", "I466V", "Q483K"], "gp120": ["A2T", "S3L", "N4E", "D19E", "T104S", "N158G", "N159D", "R201N", "E240G", "E241D", "E247K", "I249L", "I255T", "T288S", "D294E", "K307G", "T313-", "N328-", "K329-", "N330-", "N334-", "S336-", "S337-", "N432G", "T436S"], "gp41": ["T101E", "D109S", "V124I", "N140T", "A156E", "V187I", "I222T", "R231K", "I264V", "Y284H", "N313D", "I319L", "C326F", "R334T"], "nef": ["I10V", "P24S", "A26N", "D54A", "E63D", "Y102H", "Q105K", "E176A"], "p17": ["V7I", "M31L", "L41M", "G49D", "K62N", "I75L", "K76R", "E93D", "V94I", "E102-", "E103-", "V104-", "E105-", "K106E", "I107E", "Q108V", "K109E", "S111R", "Q113K", "E114K", "T115S", "K117Q", "A118Q", "A119T", "T120Q", "S121K", "K122E", "V128A"], "p2": ["N9Q"], "p24": ["Q86P", "T110N", "Q112A", "T116A", "V230I"], "p6": ["T8S", "A22V"], "p7": ["K3R", "S4N", "R41Q"], "pro": ["T12P", "K41R", "M89I"], "rev": ["S7V", "E10A", "V16A", "L73F", "L78I", "H82R", "I102T", "S106P"], "tat": ["K19R", "V36Y", "K53S", "S87P"], "vif": ["H27Y", "K36N", "G37N", "V51I", "Q91L", "H110Y", "T157A", "K158R", "I159R"], "vpr": ["H45Y", "T84I", "P85L", "G94S", "S96P"], "vpu": ["K37Q", "L43I", "P76-"]}, "labels": {"aa": "INT: S24N, T125A, G163A, Y227F; RT-p51: S162A, K174A, E207D, S251I, I292V, I326T, A376C, D413E; RT-p66: S162A, K174A, E207D, S251I, I292V, I326T, A376C, D413E, I466V, Q483K; gp120: A2T, S3L, N4E, D19E, T104S, N158G, N159D, R201N, E240G, E241D, E247K, I249L, I255T, T288S, D294E, K307G, T313-, N328-, K329-, N330-, N334-, S336-, S337-, N432G, T436S; gp41: T101E, D109S, V124I, N140T, A156E, V187I, I222T, R231K, I264V, Y284H, N313D, I319L, C326F, R334T; nef: I10V, P24S, A26N, D54A, E63D, Y102H, Q105K, E176A; p17: V7I, M31L, L41M, G49D, K62N, I75L, K76R, E93D, V94I, E102-, E103-, V104-, E105-, K106E, I107E, Q108V, K109E, S111R, Q113K, E114K, T115S, K117Q, A118Q, A119T, T120Q, S121K, K122E, V128A; p2: N9Q; p24: Q86P, T110N, Q112A, T116A, V230I; p6: T8S, A22V; p7: K3R, S4N, R41Q; pro: T12P, K41R, M89I; rev: S7V, E10A, V16A, L73F, L78I, H82R, I102T, S106P; tat: K19R, V36Y, K53S, S87P; vif: H27Y, K36N, G37N, V51I, Q91L, H110Y, T157A, K158R, I159R; vpr: H45Y, T84I, P85L, G94S, S96P; vpu: K37Q, L43I, P76-"}}, "children": [{"name": "KY953201", "node_attrs": {"div": 0.16809999999999997, "accession": "KY953201", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMG11NG007"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A374G", "C440T", "A520T", "T572C", "T602C", "A758G", "T926C", "A1073G", "C1088T", "A1151G", "C1214T", "A1349G", "G1394A", "G1498A", "G1619A", "C1754T", "C1756A", "G1766A", "G1769A", "A1775G", "C1783T", "C1796T", "G1852A", "G2182A", "C2353T", "T2503C", "G2714A", "C2720T", "T2737C", "T2803G", "G2914A", "C2968A", "C3097T", "C3133T", "A3233G", "T3355C", "T3380C", "A3385G", "A3414T", "A3435G", "A3442T", "T3535C", "T3541C", "G3595A", "A3643G", "C4058A", "C4162A", "C4288T", "A4650C", "C4652T", "A4693G", "G4802A", "G4865A", "T4917C", "A4936C", "A4951G", "A4958T", "C4977A", "C5222T", "A5601T", "A5607G", "G5626T", "A5644G", "T5686A", "A5729G", "A6023G", "T6025A", "G6029A", "A6159C", "T6163C", "A6167G", "A6168C", "-6172G", "G6173A", "-6175C", "A6177G", "-6179A", "A6180C", "C6183T", "T6184G", "G6187C", "A6189G", "C6190T", "A6191T", "C6198T", "G6203A", "A6204G", "-6205T", "-6211G", "-6215G", "-6216A", "-6217T", "-6218C", "-6219T", "-6220A", "-6221A", "-6222C", "-6229T", "A6232T", "A6275G", "C6318T", "A6327G", "A6338T", "A6339C", "T6340C", "T6563G", "G6566T", "G6611A", "C6613A", "C6632T", "G6638A", "A6648G", "C6667T", "A6668G", "A6669C", "G6725A", "C6777A", "A6779G", "C6785T", "G6821A", "T6828A", "-6830G", "-6831A", "-6832A", "A6840T", "A6843C", "T6844C", "-6953C", "-6954T", "A6959G", "-6962A", "-6963G", "-6965A", "-6968C", "-6969C", "-6971T", "-6972A", "-6977G", "-6978C", "-6979A", "-6992T", "-6993C", "-6994T", "-6995G", "-6996A", "-6997T", "-6998A", "-6999G", "-7000G", "-7001A", "-7002A", "-7003T", "-7004A", "-7005T", "-7006C", "-7008C", "-7009A", "T7075C", "C7124A", "A7158C", "C7170T", "G7303A", "G7456A", "C7463A", "A7629C", "G7633T", "T7642G", "A7660G", "G7677A", "A7687G", "C7691G", "G7701A", "A7713C", "A7761C", "A7771C", "A7782C", "A7818G", "A7826G", "T7912C", "A7935G", "C7939T", "A7964G", "T8115C", "A8221C", "G8255A", "C8268T", "A8280T", "C8293T", "A8305T", "A8308G", "A8329G", "G8349A", "G8357T", "G8368A", "-8369A", "T8374C", "G8388A", "G8502A", "C8531T", "G8588A", "A8652C", "T8726A", "G8738A", "T8740C", "T8745C", "A8746T", "G8753A", "C8771T", "G8786A", "G8793A", "A8858G", "A8864T", "C8873T", "A8874G", "G8917A", "C8937T", "G8945T", "C8948T", "G8955A", "C8960A", "-8966T", "A8967G", "G8968A", "A8970G", "G8971-", "A8977G", "C8978A", "A8979C", "G8981C", "G8983A", "C8985G", "T8988G", "C8990T", "C8992A", "T8994A", "G8995C", "G8996A", "C8999T", "T9000G", "C9003G", "G9005T", "G9135A"], "INT": ["Q95K"], "RT-p51": ["D207N", "D291E", "I380V", "Y440F"], "RT-p66": ["D207N", "D291E", "I380V", "Y440F", "N447S", "E449D"], "gp120": ["-57E", "E59K", "N102T", "S104N", "K107T", "N108E", "-109D", "-110F", "K141E", "P155L", "L237V", "A238S", "A253T", "L260F", "E262K", "E265G", "N272A", "A291T", "T308K", "K309E", "N311-", "I331-", "T332-", "F333-", "P335-", "-365L", "N383S", "-385T", "L424I", "N435T", "S436N", "T439I"], "gp41": ["L54M", "S109T", "E110D", "D113E", "S125N", "Q130E", "S133N", "E137A", "D153A", "E156D", "N160T", 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"K127-", "N128-", "K143Q", "D157N", "N158E", "N159T", "-160S", "-161N", "E183D", "E240D", "N248K", "N252S", "A253N", "T263S", "R280G", "T288M", "A291T", "T292G", "D294I", "D297N", "H302Y", "T308-", "K309-", "W310-", "T313-", "L314-", "Q315-", "K316-", "V317-", "L321-", "-324K", "F325W", "-326G", "-327E", "K329D", "T330K", "N334D", "G361K", "-367T", "-368T", "-370E", "T387I", "N414D", "G431A", "N433T", "N434T", "-435T", "T436E", "N437T", "E438-", "T439-"], "gp41": ["S42G", "I118M", "S133T", "E220G", "H258R", "R259H", "R324G", "C326G"], "nef": ["Q22H", "A49T", "Q50E", "T51N", "D54A", "R71K", "G83A", "K104Q", "Q105K", "Q107A", "I133T", "Y135L", "A151E", "N157S", "D177N", "R192K", "C206*", "*207Q"], "p1": ["K4R"], "p17": ["R20H", "R30K", "A54S", "K62S", "L68Y", "K106-", "E114G", "A119-", "T120-", "S121-", "K122-"], "p24": ["V11M", "S14A", "M68I", "T108S", "Q112P", "I115V", "K154R", "D180E", "R203K", "A204S", "A207T"], "p6": ["T8S", "P24S", "E34D", "T35S", "L38I", "*50W", "Q52K"], "pro": ["L10M", "T12K", "D37E", "P63L", "I82V"], "rev": ["S7G", "Q14R", "A15V", "V16I", "I52V", "S54E", "E57Q", "R90G", "P92S"], "tat": ["N7K", "K24N", "V29R", "K53R", "H54N", "S62D", "K71E", "P81Q", "K85E"], "vif": ["H27Y", "I31R", "G37D", "K63R", "T74P", "H83N", "Q91L", "Q105H", "D117E", "R132S", "T155A", "I159R", "K176E", "T188I", "S190N"], "vpr": ["Q3R", "T28A", "Q77R", "P85L", "D91N", "G94S"], "vpu": ["Q2N", "E5Q", "A7S", "I13V", "K41R", "D44K"]}, "labels": {"aa": "INT: R14K, N27G, I72V, S119P, D167E, I208L, K211R; RT-p51: P4T, E6K, K20R, V118I, T165I, T173A, K211R, F214L, D248N, S251N, G358E, K366R, A371V, T377K, I382T, D413E, Q428R, E438D; RT-p66: P4T, E6K, K20R, V118I, T165I, T173A, K211R, F214L, D248N, S251N, G358E, K366R, A371V, T377K, I382T, D413E, Q428R, E438D, V458I, I466V, H480Q, L503I, R512K; gp120: S3N, N5-, D19E, K31R, A32S, -57I, V61I, N71K, E78D, T104I, V106L, K127-, N128-, K143Q, D157N, N158E, N159T, -160S, -161N, E183D, E240D, N248K, N252S, A253N, T263S, R280G, T288M, A291T, T292G, D294I, D297N, H302Y, T308-, K309-, W310-, T313-, L314-, Q315-, K316-, V317-, L321-, -324K, F325W, -326G, -327E, K329D, T330K, N334D, G361K, -367T, -368T, -370E, T387I, N414D, G431A, N433T, N434T, -435T, T436E, N437T, E438-, T439-; gp41: S42G, I118M, S133T, E220G, H258R, R259H, R324G, C326G; nef: Q22H, A49T, Q50E, T51N, D54A, R71K, G83A, K104Q, Q105K, Q107A, I133T, Y135L, A151E, N157S, D177N, R192K, C206*, *207Q; p1: K4R; p17: R20H, R30K, A54S, K62S, L68Y, K106-, E114G, A119-, T120-, S121-, K122-; p24: V11M, S14A, M68I, T108S, Q112P, I115V, K154R, D180E, R203K, A204S, A207T; p6: T8S, P24S, E34D, T35S, L38I, *50W, Q52K; pro: L10M, T12K, D37E, P63L, I82V; rev: S7G, Q14R, A15V, V16I, I52V, S54E, E57Q, R90G, P92S; tat: N7K, K24N, V29R, K53R, H54N, S62D, K71E, P81Q, K85E; vif: H27Y, I31R, G37D, K63R, T74P, H83N, Q91L, Q105H, D117E, R132S, T155A, I159R, K176E, T188I, S190N; vpr: Q3R, T28A, Q77R, P85L, D91N, G94S; vpu: Q2N, E5Q, A7S, I13V, K41R, D44K"}}}, {"name": "KY275364", "node_attrs": {"div": 0.17008, "accession": "KY275364", "clade_membership": {"value": "G"}, "country": {"value": "CN"}, "date": {"value": 2016.0}, "Strain_name": {"value": "224GX"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A419G", "A423C", "T435A", "G495A", "A500T", "C510A", "A511G", "A519G", "G520A", "G534T", "G608C", "G612A", "A660C", "A678G", "-693G", "-694C", "-695A", "-696A", "-697T", "-698A", "-700G", "T707A", "A708G", "A715C", "C722T", "C731T", "G743A", "G771T", "C845T", "A869G", "C978T", "C1002T", "T1058C", "C1060G", "A1079G", "C1091T", "C1214T", "G1256A", "C1292A", "G1324-", "C1335T", "A1355G", "T1421G", "C1440A", "G1442T", "G1472A", "C1490T", "A1499G", "G1562A", "G1661A", "T1679C", "C1693T", "A1709T", "T1722C", "A1733-", "G1734-", "A1735-", "G1736A", "A1740G", "T1741G", "A1742G", "G1743A", "C1744T", "C1745A", "-1748C", "A1765G", "A1776G", "G1779T", "A1780T", "-1782C", "A1784-", "C1785-", "C1786-", "A1819G", "G1839A", "A1932G", "A1981G", "G2008A", "T2062C", "A2126C", "G2182A", "C2296T", "G2332A", "T2347G", "A2406G", "A2414T", "T2467C", "A2592G", "T2608C", "C2613T", "G2707A", "G2921A", "G2926A", "G3005A", "G3010A", "C3013T", "A3037G", "T3045C", "C3067A", "A3076G", "C3095T", "T3096C", "A3124G", "C3129A", "G3165A", "G3221T", "C3222G", "A3247G", "A3292G", "A3307C", "C3346T", "T3376C", "G3378A", "C3399A", "A3448G", "A3483G", "A3524G", "C3542T", "A3543G", "A3574G", "A3583G", "A3655G", "G3686A", "A3695G", "T3746C", "G3775A", "T3856C", "A3901G", "T3943C", "A3973T", "A4108G", "T4144C", "T4162C", "A4176G", "T4177C", "G4263A", "A4285G", "T4291C", "G4294A", "A4399G", "T4450C", "T4670C", "C4679T", "T4702C", "G4727A", "C4754T", "T4769A", "C4776T", "C4826A", "G4865A", "G4870A", "T4910C", "A4956C", "A4968T", "G4981A", "C5027T", "C5034T", "C5041T", "A5042G", "A5045G", "G5065A", "G5123A", "A5136T", "A5148T", "A5154C", "G5159A", "A5185G", "C5221T", "A5235T", "A5246G", "A5285G", "T5303A", "C5314T", "C5356A", "A5366G", "T5462C", "T5475C", "G5482C", "T5490C", "G5546C", "T5554C", "G5557A", "G5599C", "C5614G", "C5655T", "T5687A", "A5711G", "T5727C", "A5748G", "C5763T", "C5805T", "A5806G", "-5813A", "-5814G", "A5825-", "C5826-", "C5834T", "G5858A", "T5911C", "T5917G", "C5921T", "T5968C", "A5995G", "G6019A", "A6023G", "C6024A", "T6025G", "A6066G", "C6083A", "A6158G", "-6170G", "-6171C", "-6172C", "A6176T", "-6179A", "-6180C", "C6183A", "A6185G", "A6186T", "T6187C", "C6193T", "G6195A", "A6197G", "T6199C", "-6205T", "T6210G", "A6212G", "-6216A", "-6220C", "-6221A", "A6223C", "-6224A", "-6225T", "-6226T", "G6227A", "-6229A", "-6230A", "A6232G", "A6233T", "A6234T", "C6247T", "T6252C", "A6273G", "A6276C", "G6292A", "C6317T", "A6320C", "G6326C", "A6329G", "-6337A", "A6525G", "T6541C", "T6563C", "A6576G", "G6605A", "A6606G", "C6607T", "T6618C", "G6628A", "C6632T", "T6634C", "A6640G", "G6647C", "A6664G", "A6680C", "A6682G", "A6727G", "A6742G", "-6774G", "-6775T", "A6779G", "-6785T", "A6786C", "A6789C", "G6790A", "T6792C", "G6793A", "-6806G", "-6810C", "-6812C", "G6821A", "A6824G", "T6838A", "A6840C", "-6841C", "A6845G", "A6855C", "C6856A", "T6860C", "T6863A", "C6864T", "C6888T", "A6889G", "A6900T", "A6905G", "-6953C", "-6954T", "-6955A", "-6956T", "-6957T", "-6958A", "-6962A", "-6963C", "-6964C", "-6965A", "-6966C", "-6967T", "-6968C", "-6969T", "-6970A", "-6971A", "-6972C", "-6973T", "-6986G", "-6987A", "-6988C", "-6989A", "-6990C", "-6991C", "-6992A", "-6993C", "-6994T", "-6995C", "-6996T", "-6997A", "-6998G", "-6999A", "-7000G", "-7001A", "-7002A", "-7003T", "G7004A", "-7005C", "-7006C", "-7008A", "A7010C", "G7042A", "T7081C", "T7105C", "G7107A", "A7108T", "A7111T", "C7114T", "G7137A", "G7142A", "G7146A", "A7148G", "A7149G", "A7155G", "T7156C", "-7158G", "G7160A", "A7161C", "-7162A", "-7164A", "-7165T", "A7255G", "G7303A", "T7309G", "C7313A", "G7315A", "A7426G", "T7433C", "C7463A", "G7513A", "A7525T", "A7533G", "A7641G", "G7669A", "A7693G", "G7701A", "C7703T", "C7747T", "T7751C", "T7774C", "A7782C", "T7844C", "G7862A", "T7929A", "C7969A", "G8036T", "C8037T", "C8048T", "A8069C", "G8070T", "C8080A", "G8085C", "G8114A", "G8126A", "G8127A", "C8238G", "T8265G", "G8267A", "C8270T", "A8272C", "T8278C", "T8287C", "T8290C", "C8291T", "T8292G", "C8293T", "T8321C", "G8330A", "C8331T", "T8333C", "G8335A", "C8336A", "G8349A", "G8350A", "T8366C", "-8369A", "C8382T", "A8405G", "C8477T", "C8480T", "T8483C", "A8491C", "C8526A", "A8584T", "A8617G", "C8676T", "C8684T", "C8740T", "T8741C", "T8746A", "C8791A", "A8797C", "G8798A", "G8799A", "G8805A", "A8814G", "C8840T", "C8849T", "T8855C", "A8859C", "T8860A", "G8870A", "C8913A", "A8947T", "C8951T", "A9041T", "A9042G"], "INT": ["T125A", "N134S", "G163E", "I208M"], "RT-p51": ["K11Q", "K104R", "T107S", "K166R", "T173I", "E207D", "V276I", "A304T", "V317A", "D324E", "L334S", "P345Q", "R357K", "A376C", "E404D", "P435Q"], "RT-p66": ["K11Q", "K104R", "T107S", "K166R", "T173I", "E207D", "V276I", "A304T", "V317A", "D324E", "L334S", "P345Q", "R357K", "A376C", "E404D", "P435Q", "K463R", "T477A", "Q483W", "V531I", "T534A"], "gp120": ["A2T", "D21E", "P23S", "-57E", "N71S", "H77N", "N102D", "D105N", "V106A", "K107T", "N108Y", "-109T", "-110N", "-111V", "-112T", "-113N", "-114N", "-115A", "-116S", "-117T", "-118A", "-119D", "-120T", "-121S", "-122V", "-123K", "-124D", "-125N", "-126I", "I133T", "K140R", "K141T", "P155-", "I156-", "D157-", "N158-", "N159-", "K224R", "E241G", "D251S", "A253T", "I255T", "L260F", "E265Q", "D294E", "-307S", "T308K", "K309E", "-311S", "-312T", "K316R", "-318E", "-319A", "-320Q", "-322K", "E323K", "-324V", "I331N", "T332V", "F333T", "N334F", "S335A", "S337P", "T345M", "N349I", "R351G", "-367L", "-368L", "-370T", "-372L", "-373T", "-374D", "-375T", "-376T", "-377L", "-378E", "-379N", "-380T", "-381N", "-382L", "I386-", "R418N", "R428K", "G430S", "G431E", "N432G", "N434S", "-435S"], "gp41": ["L4I", "L54M", "R74S", "K77R", "D113G", "S133N", "N160T", "V187I", "L209H", "A245F", "S256L", "R261T", "V271I", "G275K", "V290L", "A312G", "V321G", "A322T", "Q323Y", "L330C", "A343I", "L345I"], "nef": ["G3N", "S9R", "P14S", "Q50A", "Q62K", "Y81F", "K92R", "P150Q", "E152A", "V153I", "E155K", "K158E", "I173Q", "Y202F"], "p17": ["R30Q", "L34I", "A54T", "E55D", "Q59R", "K62D", "A67S", "K91N", "E93K", "Q108K", "K109Q", "T115A", "T120A", "S121I", "K122S", "N124K", "S125G", "Q127P"], "p2": ["Q6N"], "p24": ["L91F", "T110S", "D187E"], "p6": ["P5L", "F15L", "E19-", "I21G", "A22I", "P23A", "P25S", "-26P", "E29G", "K33-", "T35L", "N47S"], "pro": ["R14K", "K45R"], "rev": ["E11Q", "C63F", "S67L", "Q74P", "L78I", "E79D", "S89N", "G93E", "G108V"], "tat": ["V29A", "V36L", "R57A", "S60P", "G61S", "L74I", "S87*"], "vif": ["F39S", "D61E", "H80Q", "S95N", "I124L", "I128L", "R132K", "A152V", "R160K", "R184*", "T188S", "S190R"], "vpr": ["D7N", "Q11L", "Y15F", "E17A", "A19T", "Q44L", "N48D", "I61V", "L67I", "T84N", "V89R"], "vpu": ["Q2K", "P3A", "F27Y", "K35R", "D60E", "T61L", "E62A", "E63T", "A65V", "T66-", "L67-", "V69-", "D70-", "M71-", "V72-", "D73-", "F74-", "D75-", "P76-", "W77-", "V78D", "G79V"]}, "labels": {"aa": "INT: T125A, N134S, G163E, I208M; RT-p51: K11Q, K104R, T107S, K166R, T173I, E207D, V276I, A304T, V317A, D324E, L334S, P345Q, R357K, A376C, E404D, P435Q; RT-p66: K11Q, K104R, T107S, K166R, T173I, E207D, V276I, A304T, V317A, D324E, L334S, P345Q, R357K, A376C, E404D, P435Q, K463R, T477A, Q483W, V531I, T534A; gp120: A2T, D21E, P23S, -57E, N71S, H77N, N102D, D105N, V106A, K107T, N108Y, -109T, -110N, -111V, -112T, -113N, -114N, -115A, -116S, -117T, -118A, -119D, -120T, -121S, -122V, -123K, -124D, -125N, -126I, I133T, K140R, K141T, P155-, I156-, D157-, N158-, N159-, K224R, E241G, D251S, A253T, I255T, L260F, E265Q, D294E, -307S, T308K, K309E, -311S, -312T, K316R, -318E, -319A, -320Q, -322K, E323K, -324V, I331N, T332V, F333T, N334F, S335A, S337P, T345M, N349I, R351G, -367L, -368L, -370T, -372L, -373T, -374D, -375T, -376T, -377L, -378E, -379N, -380T, -381N, -382L, I386-, R418N, R428K, G430S, G431E, N432G, N434S, -435S; gp41: L4I, L54M, R74S, K77R, D113G, S133N, N160T, V187I, L209H, A245F, S256L, R261T, V271I, G275K, V290L, A312G, V321G, A322T, Q323Y, L330C, A343I, L345I; nef: G3N, S9R, P14S, Q50A, Q62K, Y81F, K92R, P150Q, E152A, V153I, E155K, K158E, I173Q, Y202F; p17: R30Q, L34I, A54T, E55D, Q59R, K62D, A67S, K91N, E93K, Q108K, K109Q, T115A, T120A, S121I, K122S, N124K, S125G, Q127P; p2: Q6N; p24: L91F, T110S, D187E; p6: P5L, F15L, E19-, I21G, A22I, P23A, P25S, -26P, E29G, K33-, T35L, N47S; pro: R14K, K45R; rev: E11Q, C63F, S67L, Q74P, L78I, E79D, S89N, G93E, G108V; tat: V29A, V36L, R57A, S60P, G61S, L74I, S87*; vif: F39S, D61E, H80Q, S95N, I124L, I128L, R132K, A152V, R160K, R184*, T188S, S190R; vpr: D7N, Q11L, Y15F, E17A, A19T, Q44L, N48D, I61V, L67I, T84N, V89R; vpu: Q2K, P3A, F27Y, K35R, D60E, T61L, E62A, E63T, A65V, T66-, L67-, V69-, D70-, M71-, V72-, D73-, F74-, D75-, P76-, W77-, V78D, G79V"}}}]}, {"name": "G_NODE_0000046", "node_attrs": {"div": 0.12068999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["-696G", "-697G", "-698T", "-700A", "G1350C", "G2837A", "G3378A", "C5356T", "T6181-", "A6223-", "G6227-", "A6332-", "T6446C", "A6695T", "A6716G", "G6809A", "A7161-", "A7163-", "A7964G", "T8371-", "T8374C", "C9078T"], "RT-p51": ["D248N"], "RT-p66": ["D248N"], "gp120": ["I281F", "T288V", "E323-", "-380T", "-384D", "I460V"], "gp41": ["R221G", "V271A"], "p24": ["A207P"], "rev": ["K39R"], "vpr": ["T84I"]}, "labels": {"aa": "RT-p51: D248N; RT-p66: D248N; gp120: I281F, T288V, E323-, -380T, -384D, I460V; gp41: R221G, V271A; p24: A207P; rev: K39R; vpr: T84I"}}, "children": [{"name": "G_NODE_0000047", "node_attrs": {"div": 0.12636999999999998, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G524A", "T655G", "-693A", "-695G", "G740A", "T774A", "T1646C", "C1756T", "A2230G", "C2326T", "T2383C", "C2776T", "A2887G", "G2926A", "A3684G", "G3816A", "G4109A", "G4148A", "C4381T", "G4696A", "G4856A", "A4858T", "C4978A", "C5041T", "G5065A", "G5385A", "C5539A", "G5545A", "A5612C", "G5747T", "T5810-", "A6022G", "A6023C", "G6029A", "A6206G", "A6573G", "A6905G", "G7004-", "A7007-", "T7009-", "A7148G", "C7313A", "A7519G", "G7720A", "C7783T", "T7843G", "A8032G", "C8033A", "C8047T", "G8055A", "C8296T", "G8376-", "C8384T", "G8387A", "T8832C"], "INT": ["R14K", "V112I"], "RT-p66": ["K530R"], "gp120": ["I56M", "-57P", "E59K", "E240G"], "gp41": ["L244I", "S251N"], "p17": ["I107R", "S121G"], "p24": ["S14A", "L15I"], "p6": ["P23-", "-26L"], "p7": ["R41K"], "rev": ["T62D"], "vpr": ["G94S"], "vpu": ["R47I"]}, "labels": {"aa": "INT: R14K, V112I; RT-p66: K530R; gp120: I56M, -57P, E59K, E240G; gp41: L244I, S251N; p17: I107R, S121G; p24: S14A, L15I; p6: P23-, -26L; p7: R41K; rev: T62D; vpr: G94S; vpu: R47I"}}, "children": [{"name": "MF109647", "node_attrs": {"div": 0.17007999999999998, "accession": "MF109647", "clade_membership": {"value": "G"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "15171_1_17.3"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["G365A", "G481A", "G534T", "A558C", "A562G", "A617G", "A663G", "A676C", "A678G", "G690A", "-694C", "A701T", "T734C", "C767T", "A803G", "C905T", "G914A", "T926C", "C936T", "G941A", "A956T", "C978A", "C1002A", "A1022G", "C1061A", "A1089G", "G1090C", "C1091T", "T1121C", "A1133C", "A1167T", "T1172C", "G1173A", "T1174C", "C1211T", "A1263T", "T1271G", "T1280C", "G1313C", "C1330T", "G1339A", "C1342G", "C1350T", "A1412G", "A1457-", "G1458-", "C1459-", "C1492A", "A1493G", "G1661A", "G1673A", "C1693T", "G1743-", "C1744-", "C1745-", "C1749G", "T1752C", "G1760A", "A1774G", "A1781-", "C1783-", "A1784G", "C1785A", "G1794A", "A1828T", "A1851G", "G1942A", "A1999G", "G2008A", "G2017A", "T2041C", "A2140G", "A2215T", "A2241G", "A2314G", "A2341G", "C2386T", "T2499C", "A2508C", "T2521C", "A2626C", "G2629A", "T2631A", "A2665T", "A2713G", "A2734G", "T2737G", "C2828A", "A2829T", "G2833A", "A2838G", "C2885T", "T2890C", "T2905A", "G2914A", "C2941T", "A2969G", "G2972A", "A3037C", "A3103G", "G3173A", "A3192G", "A3200G", "C3201T", "C3207T", "A3230G", "G3236A", "A3292C", "G3293T", "G3316A", "T3328C", "C3359T", "A3403G", "G3457A", "A3477G", "A3490G", "A3491G", "A3529G", "C3545A", "G3553A", "A3565G", "T3566C", "G3631A", "C3649G", "A3676G", "G3925A", "A4057G", "C4180A", "C4182A", "A4420G", "C4501T", "C4569T", "A4577C", "G4582A", "A4677G", "A4684G", "A4694G", "T4712C", "G4735A", "T4769-", "G4770-", "A4774G", "G4779A", "G4782A", "T4805C", "C4826T", "T4832C", "G4981A", "A5059G", "G5060A", "G5075A", "T5182A", "T5194A", "A5198C", "A5224G", "C5237T", "A5246G", "T5252C", "A5366G", "T5397A", "T5412G", "T5424C", "T5439A", "A5446C", "A5447G", "A5448C", "G5482C", "T5554C", "A5556T", "A5563G", "T5568C", "A5576C", "T5597-", "A5598-", "G5599-", "T5600-", "C5614-", "C5615-", "A5616-", "A5621C", "G5629T", "A5644G", "A5685C", "A5694G", "A5729G", "G5730C", "T5739A", "A5742G", "A5775G", "A5781T", "-5799T", "T5807G", "G5812-", "C5834T", "G5845A", "G5858A", "A5864-", "A5865-", "T5866-", "G5893A", "T5923G", "A5964G", "A5965T", "A6009G", "G6019A", "C6026A", "C6052T", "A6076C", "C6115T", "C6139A", "T6142C", "A6167G", "T6169G", "A6176-", "A6177-", "T6178-", "A6182G", "T6184A", "C6189G", "A6192C", "G6195A", "A6197G", "T6199C", "G6201C", "A6204G", "-6205A", "-6207A", "-6211C", "A6212T", "A6228-", "T6231-", "A6232-", "A6265G", "A6275C", "G6292A", "T6307G", "C6317T", "A6319C", "G6323-", "A6324-", "T6325-", "G6326-", "A6327-", "T6328-", "A6329-", "A6330-", "T6331-", "A6333-", "T6334-", "A6335-", "A6336-", "A6338-", "G6339-", "T6340-", "A6368G", "A6376G", "G6379A", "T6460A", "G6463A", "A6464G", "T6466A", "C6482A", "A6525G", "G6526A", "A6535G", "A6584G", "A6602T", "A6617G", "A6644G", "G6647A", "G6669A", "A6682G", "A6684G", "A6691-", "A6692-", "G6693-", "A6694-", "T6695-", "T6696-", "C6697-", "-6701A", "-6702T", "-6703C", "G6705C", "G6731A", "T6735A", "C6752G", "T6760C", "A6773G", "-6774T", "A6776T", "C6777T", "A6779G", "-6785T", "T6787C", "T6792C", "G6793A", "G6802A", "-6806A", "A6807G", "-6810T", "-6812A", "A6818G", "A6819G", "T6829A", "-6830A", "-6831G", "-6832G", "A6839G", "A6840C", "-6841T", "A6847T", "A6848T", "T6860C", "C6862T", "A6913G", "T6932A", "T6943C", "A6959-", "A6960-", "T6961-", "C7014T", "G7056A", "C7087T", "C7089A", "T7096A", "A7097C", "G7107A", "A7108C", "A7129G", "A7152C", "A7154-", "A7155-", "T7156-", "A7157-", "T7159-", "G7160-", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "A7239G", "A7280T", "G7281T", "G7303A", "T7308C", "G7315A", "G7322T", "T7325C", "C7328T", "T7392C", "A7420G", "G7441A", "C7463T", "G7465A", "T7466C", "G7508A", "A7532C", "G7608A", "A7626T", "G7628A", "A7629G", "T7630G", "C7675T", "C7691G", "C7723A", "A7772G", "T7774C", "A7782G", "T7796A", "A7799C", "C7801G", "G7831A", "A7880T", "A7935G", "C7936T", "C7939G", "G7997A", "G8114A", "G8117C", "T8138A", "G8143A", "C8147A", "A8151C", "A8152C", "G8185A", "A8188G", "A8193G", "C8213T", "T8214A", "C8268T", "A8273G", "T8279G", "A8288G", "C8293T", "A8317G", "G8349A", "T8366C", "A8367-", "G8368-", "A8370-", "A8372-", "G8373-", "C8374-", "T8375-", "G8377-", "A8378-", "A8386C", "G8388A", "C8406A", "A8407G", "A8409-", "C8410-", "C8411-", "C8412-", "C8413-", "T8414-", "C8415-", "G8476A", "C8477T", "T8483C", "G8487T", "C8499G", "A8503C", "G8532T", "A8533C", "T8534A", "T8546C", "T8568A", "G8588A", "A8604G", "T8636A", "C8670A", "A8686T", "T8746A", "G8762T", "T8779A", "G8786A", "G8805A", "A8806G", "A8814G", "G8822A", "C8843T", "A8858G", "G8870A", "A8879T", "G8902T", "A8918G", "C8937T", "C8948T", "C8951G"], "INT": ["M50I", "T136K", "A265V", "I268L"], "RT-p51": ["E40D", "K49R", "S123N", "I135T", "E138A", "E177D", "V179E", "E207D", "F214L", "Q245M", "N248S", "I292V", "V293I", "A360T", "K366R", "T369V", "A371V", "S379G", "V381I", "E399D", "V400L"], "RT-p66": ["E40D", "K49R", "S123N", "I135T", "E138A", "E177D", "V179E", "E207D", "F214L", "Q245M", "N248S", "I292V", "V293I", "A360T", "K366R", "T369V", "A371V", "S379G", "V381I", "E399D", "V400L", "K461R", "I466V", "L484I", "S491P"], "gp120": ["A2-", "S3T", "N4S", "K37S", "N52S", "L58M", "E74D", "D105E", "V106A", "K107N", "N108S", "-109T", "-110N", "-111A", "-112T", "-124G", "-125E", "-126I", "I137M", "K141Q", "P155S", "D157-", "N158-", "N159-", "S162-", "T172A", "D202E", "N204E", "Q210K", "K224R", "I244V", "T250S", "I255V", "I264V", "E265K", "K277-", "S278-", "I279-", "R280-", "F281-"], "gp41": ["V2A", "L4I", "V7F", "F8L", "L9F", "V30A", "V69I", "K77Q", "S102N", "Y108F", "D109R", "Q130E", "N140K", "S157G", "N160S", "S165T", "N166Q", "M176I", "I193L", "H211R", "H212Q", "D232N", "A271I", "E272Q", "S277R", "W279R", "L282I", "K283T", "V290L", "K297R", "L304Y", "A322V", "R324G", "C326G", "I329V"], "nef": ["G3S", "S9-", "I10-", "V11-", "G12-", "E15A", "V16I", "Q22R", "T23-", "P24-", "P25-"], "p17": ["G49D", "K62R", "A67S", "I75L", "K76R", "K110E", "E114A", "T115A", "A119T", "K122N"], "p2": ["A12-"], "p24": ["E75D", "L83I", "Q86P", "L91I", "S120A", "S146C", "V148T", "T178S", "D180E", "T200I", "R203K", "A204G", "P207S"], "p6": ["P5L", "P24-", "E32G", "P36-", "A39T", "*50L"], "p7": ["P9Q"], "pro": ["Q18R"], "rev": ["Q14L", "I18T", "I21L", "P30S", "P31A", "R50K", "S89N", "R90T", "V97E", "G99R", "P100H", "Q101H", "I102L", "G108V", "G113R", "T114A"], "tat": ["N7K", "N12K", "K24R", "V36L", "S60P", "K63E", "N67T", "T76V", "T77S"], "vif": ["I31V", "K33R", "G37D", "R50K", "A62-"], "vpr": ["H45Y", "N48D", "Y50H"], "vpu": ["P3L", "L4A", "E5-", "A8S", "I13V", "K41S", "D44E", "E58D", "D60E", "T61L", "E62A", "E63T", "A65V", "T66-", "L67-", "V69-", "D70-", "M71-", "V72-", "D73-", "F74-", "D75-", "P76-", "W77-", "V78D", "G79R", "N81F"]}, "labels": {"aa": "INT: M50I, T136K, A265V, I268L; RT-p51: E40D, K49R, S123N, I135T, E138A, E177D, V179E, E207D, F214L, Q245M, N248S, I292V, V293I, A360T, K366R, T369V, A371V, S379G, V381I, E399D, V400L; RT-p66: E40D, K49R, S123N, I135T, E138A, E177D, V179E, E207D, F214L, Q245M, N248S, I292V, V293I, A360T, K366R, T369V, A371V, S379G, V381I, E399D, V400L, K461R, I466V, L484I, S491P; gp120: A2-, S3T, N4S, K37S, N52S, L58M, E74D, D105E, V106A, K107N, N108S, -109T, -110N, -111A, -112T, -124G, -125E, -126I, I137M, K141Q, P155S, D157-, N158-, N159-, S162-, T172A, D202E, N204E, Q210K, K224R, I244V, T250S, I255V, I264V, E265K, K277-, S278-, I279-, R280-, F281-; gp41: V2A, L4I, V7F, F8L, L9F, V30A, V69I, K77Q, S102N, Y108F, D109R, Q130E, N140K, S157G, N160S, S165T, N166Q, M176I, I193L, H211R, H212Q, D232N, A271I, E272Q, S277R, W279R, L282I, K283T, V290L, K297R, L304Y, A322V, R324G, C326G, I329V; nef: G3S, S9-, I10-, V11-, G12-, E15A, V16I, Q22R, T23-, P24-, P25-; p17: G49D, K62R, A67S, I75L, K76R, K110E, E114A, T115A, A119T, K122N; p2: A12-; p24: E75D, L83I, Q86P, L91I, S120A, S146C, V148T, T178S, D180E, T200I, R203K, A204G, P207S; p6: P5L, P24-, E32G, P36-, A39T, *50L; p7: P9Q; pro: Q18R; rev: Q14L, I18T, I21L, P30S, P31A, R50K, S89N, R90T, V97E, G99R, P100H, Q101H, I102L, G108V, G113R, T114A; tat: N7K, N12K, K24R, V36L, S60P, K63E, N67T, T76V, T77S; vif: I31V, K33R, G37D, R50K, A62-; vpr: H45Y, N48D, Y50H; vpu: P3L, L4A, E5-, A8S, I13V, K41S, D44E, E58D, D60E, T61L, E62A, E63T, A65V, T66-, L67-, V69-, D70-, M71-, V72-, D73-, F74-, D75-, P76-, W77-, V78D, G79R, N81F"}}}, {"name": "KY953200", "node_attrs": {"div": 0.17423, "accession": "KY953200", "clade_membership": {"value": "G"}, "country": {"value": "NG"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMG11NG006"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["T165-", "A166G", "C207T", "T214A", "-217A", "T227A", "G256-", "A263G", "G317A", "G378A", "C379A", "G395A", "G398A", "A426C", "G461C", "C485A", "C496G", "A508G", "A516C", "G520C", "C525T", "A548G", "T575C", "A606G", "A619G", "A659G", "A665T", "A676G", "A680C", "A684G", "A685C", "-694T", "G709A", "G785A", "G821A", "C897T", "C905A", "G908A", "G968A", "C988A", "C1002T", "T1040C", "A1077G", "T1143C", "A1190C", "G1232A", "T1244C", "G1256A", "A1359T", "C1362T", "A1367G", "G1394T", "A1397G", "G1419A", "C1439T", "C1444T", "G1455T", "A1463G", "A1474G", "A1476-", "G1477-", "C1478-", "T1481C", "C1491A", "A1497G", "T1502A", "A1529T", "C1536T", "C1541T", "G1562A", "G1617C", "A1620G", "A1642G", "A1644T", "T1652C", "G1663A", "C1680A", "G1691A", "C1712A", "G1720A", "G1766A", "C1768A", "A1775C", "-1782A", "C1826A", "C1853T", "G1907A", "A1927G", "T1987A", "G2002A", "C2047T", "T2101A", "G2182A", "G2332A", "G2359T", "C2365T", "G2387T", "A2395G", "A2406G", "A2431G", "C2452T", "G2456C", "A2462G", "T2488C", "T2499A", "A2519G", "G2539A", "G2578A", "G2583C", "A2627C", "A2692G", "G2714C", "T2716G", "C2723T", "G2725A", "A2767G", "G2878T", "T2908C", "C2909T", "C2953T", "G3004A", "G3019A", "T3172A", "A3264G", "A3283G", "T3358C", "C3398T", "C3399T", "A3445T", "A3504C", "A3508G", "G3523A", "T3535C", "A3543T", "T3652C", "A3664G", "G3686A", "A3736G", "C3751T", "A3766G", "A3814G", "G3834A", "T3844C", "T3865G", "A3866G", "A3901G", "C3908T", "C4021A", "A4051G", "C4072T", "A4146C", "A4315C", "G4459A", "A4498C", "A4539G", "C4540T", "G4549A", "A4564G", "A4643G", "C4665T", "T4678G", "C4679A", "G4695A", "C4697T", "T4706C", "G4727A", "C4761G", "T4769A", "A4774T", "A4775G", "G4786A", "A4816G", "G4861A", "T4932A", "A4968G", "A5021C", "C5027T", "A5061G", "T5062C", "G5123A", "G5131A", "G5137A", "G5141-", "A5142-", "A5143-", "C5144-", "C5145-", "C5146-", "T5147-", "A5148-", "C5149-", "A5150-", "A5151-", "T5152-", "G5155A", "A5164G", "T5203C", "C5213A", "C5214T", "C5221T", "T5228C", "C5314A", "T5354C", "A5355C", "C5358T", "C5359T", "G5362A", "G5363A", "T5371G", "G5375A", "G5376A", "A5448T", "G5461A", "T5462A", "G5463A", "A5548G", "C5551T", "G5557A", "A5587G", "A5601C", "A5621T", "A5622G", "A5689G", "A5706T", "G5720A", "T5727A", "A5728C", "C5734A", "G5755A", "C5792A", "A5793G", "A5794G", "C5795A", "C5797T", "-5799G", "T5801C", "G5802C", "G5803A", "C5805A", "A5806C", "G5808T", "G5809-", "-5813T", "-5814G", "-5815G", "-5816A", 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"C8790A", "C8791T", "G8798T", "A8807G", "G8848C", "A8859C", "G8871A", "C8873T", "A8874G", "G8893A", "A8894G", "T8903C", "G8915A", "C8928A", "G8929A", "G8933A", "T8935A", "C8960T", "C8975T", "A8980C", "T8994C", "T9097C", "A9099G"], "INT": ["R20K", "I31V", "N124T", "N255S"], "RT-p51": ["W88C", "A98S", "K104R", "D121H", "S123D", "I135K", "I142V", "S163T", "I178L", "E207Q", "P272S", "K390R", "P435L"], "RT-p66": ["W88C", "A98S", "K104R", "D121H", "S123D", "I135K", "I142V", "S163T", "I178L", "E207Q", "P272S", "K390R", "P435L", "Q470P", "Q483L", "V531I"], "gp120": ["T22A", "D105N", "-109L", "S130T", "I137L", "K141S", "L147I", "K150R", "L151S", "P155Q", "D157G", "N158D", "-160S", "-161T", "S162K", "V170I", "S181T", "R201N", "K203E", "T208K", "T246S", "I249F", "D251N", "I255T", "I257L", "E262K", "T263S", "N272G", "R280S", "F289L", "D294A", "G296I", "D297-", "I298-", "R299-", "Q300-", "A301-", "H302-", "C303-", "N304-", "V305-", "S306-", "K307-", "T308-", "K309-", "W310-", "T313-", "L314-", "Q315-", "K316-", "V317-", "L321-", "F325-", "-326G", "N328I", "K329T", "S337T", "I343V", "T344V", "S347M", "R351G", "N358D", "G361E", "-365D", "S366T", "-367R", "N369-", "-378N", "-379S", "-381N", "-382T", "-383S", "L425I", "N432E", "N433E", "T436E", "N437T", "T439I", "R472K"], "gp41": ["V2I", "L4M", "I24L", "K77R", "D113G", "Q119E", "S125N", "Q129K", "N160T", "K172R", "E223G", "G225E", "D230G", "R231K", "S256I", "F263L", "I264V", "G281S", "Q294R", "I307T", "I309V", "V321L", "N331H", "L340A"], "nef": ["S9K", "I10R", "V11A", "G12Q", "P14S", "E18A", "R19K", "I20M", "A26T", "G31E", "R39K", "G83A", "Y135F", "P150I", "E152D", "C169S", "I173L", "D177N", "R178G", "R184K", "R196K", "L198Q"], "p1": ["K4R", "I5F", "G11E"], "p17": ["A15K", "M31L", "E42D", "A54G", "Q58R", "M61L", "K62T", "R91G", "K95R", "K110N", "E114G", "K117A", "T120M", "S125N"], "p2": ["A7V", "A11S", "I13M"], "p24": ["L91F", "T116A", "T210S", "V230I"], "p6": ["L1I", "S14N", "P25S", "P30Q", "E32D"], "p7": ["K3R", "S4-", "P9T", "R11G", "N12K", "E21D", "E51Q", "R52G"], "pro": ["L10I", "D37N"], "rev": ["S56G", "E57Q", "Q74H", "H82S", "G99E", "I102V"], "tat": ["K24N", "V29K", "T58A", "P59S", "G61S", "K71E"], "vif": ["H27Y", "I31R", "G37N", "L59V", "D61E", "K63M", "R67K", "K77R", "Q91L", "R92K", "S116T", "I128V", "P131H", "A152V", "I159A", "R160K", "G182D", "R184K", "N186-", "P187-", "T188-", "M189-", "S190N", "*193W"], "vpr": ["D7N", "P14-", "Y15-", "N16-", "E17-", "P37I", "I84L", "P85L", "R86Q", "V89G", "D91N"], "vpu": ["Q2T", "E5V", "I28V", "R38K", "D40E", "K41Q", "L43I", "A50T", "T66K", "M71F", "V72E", "D73Q", "L82M"]}, "labels": {"aa": "INT: R20K, I31V, N124T, N255S; RT-p51: W88C, A98S, K104R, D121H, S123D, I135K, I142V, S163T, I178L, E207Q, P272S, K390R, P435L; RT-p66: W88C, A98S, K104R, D121H, S123D, I135K, I142V, S163T, I178L, E207Q, P272S, K390R, P435L, Q470P, Q483L, V531I; gp120: T22A, D105N, -109L, S130T, I137L, K141S, L147I, K150R, L151S, P155Q, D157G, N158D, -160S, -161T, S162K, V170I, S181T, R201N, K203E, T208K, T246S, I249F, D251N, I255T, I257L, E262K, T263S, N272G, R280S, F289L, D294A, G296I, D297-, I298-, R299-, Q300-, A301-, H302-, C303-, N304-, V305-, S306-, K307-, T308-, K309-, W310-, T313-, L314-, Q315-, K316-, V317-, L321-, F325-, -326G, N328I, K329T, S337T, I343V, T344V, S347M, R351G, N358D, G361E, -365D, S366T, -367R, N369-, -378N, -379S, -381N, -382T, -383S, L425I, N432E, N433E, T436E, N437T, T439I, R472K; gp41: V2I, L4M, I24L, K77R, D113G, Q119E, S125N, Q129K, N160T, K172R, E223G, G225E, D230G, R231K, S256I, F263L, I264V, G281S, Q294R, I307T, I309V, V321L, N331H, L340A; nef: S9K, I10R, V11A, G12Q, P14S, E18A, R19K, I20M, A26T, G31E, R39K, G83A, Y135F, P150I, E152D, C169S, I173L, D177N, R178G, R184K, R196K, L198Q; p1: K4R, I5F, G11E; p17: A15K, M31L, E42D, A54G, Q58R, M61L, K62T, R91G, K95R, K110N, E114G, K117A, T120M, S125N; p2: A7V, A11S, I13M; p24: L91F, T116A, T210S, V230I; p6: L1I, S14N, P25S, P30Q, E32D; p7: K3R, S4-, P9T, R11G, N12K, E21D, E51Q, R52G; pro: L10I, D37N; rev: S56G, E57Q, Q74H, H82S, G99E, I102V; tat: K24N, V29K, T58A, P59S, G61S, K71E; vif: H27Y, I31R, G37N, L59V, D61E, K63M, R67K, K77R, Q91L, R92K, S116T, I128V, P131H, A152V, I159A, R160K, G182D, R184K, N186-, P187-, T188-, M189-, S190N, *193W; vpr: D7N, P14-, Y15-, N16-, E17-, P37I, I84L, P85L, R86Q, V89G, D91N; vpu: Q2T, E5V, I28V, R38K, D40E, K41Q, L43I, A50T, T66K, M71F, V72E, D73Q, L82M"}}}]}, {"name": "G_NODE_0000048", "node_attrs": {"div": 0.12923999999999997, "clade_membership": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "T571A", "C767T", "G771T", "A956G", "G977A", "T1143C", "T1229C", "C1490T", "A1588G", "A1642G", "A1781G", "C1826A", "G2002A", "G2389A", "A2463G", "C2613A", "T3334G", "A3361G", "A3490G", "G3756A", "A3985G", "A4175G", "A4213G", "C4761T", "C4776A", "C4820A", "C4937A", "G5179A", "T5239C", "C5478T", "G5626T", "A5665G", "T5686C", "A6008G", "C6202T", "-6216T", "A6251G", "A6303G", "G6326A", "T6395A", "G6451A", "G6456A", "C6482A", "A6644G", "T6658C", "A6668G", "C6729A", "-6810C", "-6812C", "A6824G", "G6935A", "-6947G", "-6948A", "-6954T", "-6958T", "-6965A", "-6966A", "-6967T", "-6969A", "-6971A", "-6986A", "-6987A", "-6990A", "-7003T", "-7005A", "-7006C", "-7008C", "A7232G", "G7322C", "G7366A", "T7392C", "A7420G", "G7517C", "G7633A", "A7657G", "G7677A", "G7701C", "C7703T", "G7790A", "A7791G", "T7796A", "C7801T", "A7818G", "T8115C", "G8143A", "G8276A", "-8369C", "-8371A", "A8469C", "C8494A", "C8675T", "A8784G", "G8861A", "T8903C", "A8947T", "G9030A"], "INT": ["T125A", "N134D"], "RT-p51": ["T173K", "D413E"], "RT-p66": ["T173K", "D413E", "S554N"], "gp120": ["N52D", "I133V", "K150R", "-161N", "I264V", "N272G", "-319T", "-320Q", "G361R", "-365E", "-383N", "-385T", "T436-"], "gp41": ["V7L", "V30A", "V72L", "I118M", "S125N", "D163S", "S165T", "K172R", "A325T"], "nef": ["I10K", "V11S", "I43L", "T51N", "M148V", "Y202F"], "p1": ["K4R"], "p17": ["M31L", "F79Y"], "tat": ["R57G"], "vif": ["L64I", "D78E", "D117E"], "vpu": ["I20V"]}, "labels": {"aa": "INT: T125A, N134D; RT-p51: T173K, D413E; RT-p66: T173K, D413E, S554N; gp120: N52D, I133V, K150R, -161N, I264V, N272G, -319T, -320Q, G361R, -365E, -383N, -385T, T436-; gp41: V7L, V30A, V72L, I118M, S125N, D163S, S165T, K172R, A325T; nef: I10K, V11S, I43L, T51N, M148V, Y202F; p1: K4R; p17: M31L, F79Y; tat: R57G; vif: L64I, D78E, D117E; vpu: I20V"}}, "children": [{"name": "MK254639", "node_attrs": {"div": 0.17816999999999997, "accession": "MK254639", "clade_membership": {"value": "G"}, "country": {"value": "CN"}, "date": {"value": 2016.0}, "Strain_name": {"value": "9835"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["C179G", "G183T", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "G196-", "G197-", "A198-", "C199-", "T200-", "T201-", "G202-", "A203-", "A204-", "A205-", "G206-", "C207-", "G208-", "A209-", "A210-", "A211-", "G212-", "T213-", "T214-", "A215-", "A216-", "A265G", "C287A", "T288C", "A303T", "A359G", "A380G", "A426C", "G428A", "T435A", "C485T", "A499G", "T503C", "A519G", "A530G", "G542A", "A548G", "T572C", "A605G", "A606C", "G607A", "G615A", "A643C", "A654G", "C681-", "A682-", "G683-", "A684-", "A685-", "G686-", "G687-", "C688-", "A689-", "G690-", "C691-", "A692-", "G697A", "T707G", "A715C", "T719C", "A730T", "A1017C", "A1035G", "T1052C", "T1055C", "G1109A", "G1173A", "T1174C", "G1199A", "T1299C", "C1334T", "C1351A", "C1362T", "G1394A", "C1409T", "T1446A", "T1451G", "C1453G", "A1493G", "A1496G", "G1498A", "C1571T", "G1661A", "A1700G", "G1743A", "C1749T", "T1752C", "C1754T", "A1771G", "-1782C", "G1794A", "A1828G", "A1840G", "G1848A", "A1882G", "G1907A", "A1951G", "C1960T", "C1979G", "A1993G", "G2027A", "G2056A", "A2108G", "G2113A", "A2215T", "T2245A", "A2273G", "A2293G", "C2296T", "G2332A", "A2396C", "A2404G", "A2406G", "T2434C", "A2508C", "T2542C", "G2548A", "A2579T", "T2597C", "A2611G", "A2617C", "A2626C", "G2629A", "C2671T", "T2689C", "A2713G", "T2716G", "C2720T", "T2803A", "G2815A", "G2830A", "G2921A", "T2935C", "G2951A", "C2968T", "A2992G", "A3088G", "G3127A", "A3132T", "G3277A", "A3292G", "C3352T", "C3359T", "C3399T", "A3430G", "G3467A", "C3496T", "A3524G", "G3553A", "C3559T", "C3589T", "A3604G", "A3643G", "C3649T", "C3653T", "A3654T", "A3739G", "A3768G", "A3808G", "C3826T", "G3891A", "G3907A", "C3908G", "A3913G", "G3934A", "T3976C", "T3991C", "C4006A", "G4109A", "C4132T", "T4135C", "C4138T", "C4141T", "T4261A", "C4270T", "A4273G", "G4335A", "A4336G", "T4396A", "A4399C", "A4402G", "C4428T", "T4441C", "A4495G", "G4637A", "C4697A", "T4706C", "A4774T", "G4779A", "T4799C", "A4863C", "G4864A", "A4878C", "T4938A", "G4949A", "C4955A", "A4968G", "C4978A", "G4981A", "A4990T", "T5003C", "T5028C", "A5033C", "C5034T", "C5056A", "G5065A", "G5086A", "T5091C", "A5119G", "A5143G", "A5224T", "A5269G", "T5292C", "A5293G", "A5302G", "A5324G", "C5334A", "A5336C", "A5355C", "C5361A", "T5382G", "T5397A", "G5418A", "A5432G", "C5438A", "T5439A", "T5466C", "C5496A", "A5537C", "A5556G", "A5613C", "C5614T", "A5622G", "C5664T", "G5673A", "A5685T", "A5719G", "G5720C", "C5734A", "G5737A", "A5775G", "A5776G", "C5792A", "A5793G", "A5794G", "C5795A", "C5797-", "T5798-", "G5800T", "A5804C", "C5805A", "T5807C", "G5808C", "G5809C", "-5811T", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822T", "-5823G", "-5824G", "C5834A", "T5844G", "A5864G", "A5896G", "A5908G", "C5921A", "T5929C", "T5956C", "C6014A", "G6019A", "A6023T", "C6024T", "G6121A", "A6131C", "C6143T", "C6154T", "A6168C", "-6170C", "-6171T", "-6172T", "-6173A", "-6174C", "-6175A", "-6179G", "-6180A", "-6181G", "T6184C", "T6187C", "C6189A", "C6193T", "G6195C", "T6196-", "A6197-", "C6198-", "T6199-", "A6200-", "A6204C", "-6205G", "-6207C", "-6211A", "A6214C", "-6215G", "-6217C", "-6218T", "-6219T", "-6220T", "A6228-", "A6232T", "A6234G", "A6263G", "A6275G", "A6281T", "A6282C", "G6292A", "G6311A", "G6313A", "T6322A", "A6324G", "A6330C", "-6332T", "A6333C", "A6336T", "-6337A", "A6338G", "G6339A", "T6340A", "C6347T", "A6368G", "G6379A", "A6403C", "T6438A", "C6446G", "G6457T", "A6484C", "A6535G", "T6541C", "C6548T", "T6563A", "A6584G", "T6600C", "G6611A", "C6619T", "C6632T", "T6652C", "C6667A", "G6681A", "A6692T", "G6693C", "C6713A", "C6717T", "G6725A", "A6730T", "G6731A", "G6732A", "T6733C", "G6743A", "C6752G", "-6774G", "A6776C", "C6777A", "A6778C", "-6785A", "A6788G", "A6789T", "G6790A", "T6792C", "G6793A", "-6806A", "A6814G", "C6815T", "A6818G", "G6821A", "-6830T", "-6831C", "-6832T", "T6835A", "A6839-", "A6840-", "A6842-", "A6843-", "T6844-", "T6857C", "C6858A", "T6860C", "A6868G", "T6901C", "A6931T", "G6936A", "T6943C", "-6949A", "-6950T", "-6951C", "-6952A", "-6953T", "-6955T", "-6956A", "-6957T", "-6962G", "-6963G", "-6964G", "-6968G", "-6970T", "-6972G", "-6973T", "-6988A", "-6989G", "-6991C", "-6992A", "-6993C", "-6994T", "-6995G", "-6996A", "-6997A", "-6998A", "-6999G", "-7000T", "-7001A", "-7002A", "G7026A", "C7087T", "A7108C", "G7123A", "A7148C", "A7149T", "T7150G", "A7157-", "T7159-", "G7160-", "A7234G", "A7373G", "A7375G", "A7402G", "T7403C", "G7440C", "A7461G", "T7462C", "G7465A", "T7466C", "T7578C", "G7594A", "T7618C", "G7640A", "A7660G", "T7682C", "A7692T", "A7693T", "A7700T", "T7708A", "G7712C", "A7722T", "A7732C", "G7769A", "A7782G", "T7843G", "G7915A", "A7918T", "C7926T", "A7935G", "C7936T", "C7939G", "A7953C", "A7962G", "G7965A", "A7974G", "G7977A", "G7995A", "A8006G", "T8008G", "A8011C", "A8023G", "C8092A", "A8116G", "G8130A", "G8145C", "T8159G", "C8165A", "G8173C", "A8184G", "T8210C", "C8213T", "C8268T", "A8288G", "A8297G", "A8323G", "T8333C", "C8336G", "A8364C", "G8373A", "C8374G", "G8377A", "A8386C", "A8405G", "A8409G", "A8432G", "A8492C", "T8504C", "A8525G", "C8526G", "A8527G", "T8546C", "A8584T", "A8652G", "C8661A", "T8690C", "A8699G", "A8701T", "T8726C", "C8747T", "C8751T", "G8798A", "G8808C", "C8809T", "C8825T", "A8869G", "G8870T", "C8934A", "T8935A", "G8936A", "C9028T", "T9029C"], "INT": ["S39N", "L45V", "V112I", "R187K", "D207E", "T218I", "D288N"], "RT-p51": ["I5V", "E40D", "I60V", "K101Q", "K104R", "E138A", "S162C", "K174N", "E177D", "V276I", "A286T", "Y346F", "P435L"], "RT-p66": ["I5V", "E40D", "I60V", "K101Q", "K104R", "E138A", "S162C", "K174N", "E177D", "V276I", "A286T", "Y346F", "P435L", "V458I", "T477A", "Q520L", "K558R"], "gp120": ["N4D", "P23T", "Q54K", "-57F", "K93Q", "L97F", "D105T", "V106L", "K107T", "-109N", "-110T", "K127-", "I137V", "K141E", "K143S", "V153I", "D157N", "N159Q", "-160V", "S162E", "Y163T", "R164G", "L165N", "I166T", "N167S", "T172A", "S181T", "E183D", "F195Y", "L198V", "R201N", "Q210N", "L237I", "I244V", "I249T", "A253T", "L260F", "R276K", "R280S", "Q287K", "A291T", "T292N", "G293N", "D294I", "D297N", "Q300E", "K307R", "T308H", "-311N", "-312V", "-318K", "-322E", "-323K", "-324V", "-326S", "-327K", "K329I", "I331-", "T332-", "S335Q", "S336P", "R361K", "-367F", "-368I", "-370G", "-371N", "-372D", "-373S", "-374K", "-375D", "-381E", "-382S", "R391K", "R418S", "N432L", "N437-"], "gp41": ["I24V", "R46T", "H53R", "I92T", "D113N", "Y127H", "Q130L", "E137Q", "N140I", "E143D", "A156T", "N160S", "T208I", "H211R", "H212Q", "D217A", "E220G", "G221E", "E224G", "G225E", "R231K", "I235V", "F263L", "S277R", "G281A", "W286G", "L288I", "V290F", "Q294R", "L304F", "A322V", "I329V", "I332V", "L345V"], "nef": ["S8R", "G12E", "E15A", "T23A", "Q50H", "Q62G", "Y81F", "K104E", "Q107K", "Y120F", "I133T", "Y135F", "A156L", "E176G", "L198K"], "p17": ["L34I", "E55G", "K62G", "R91Q", "V94I", "E103A", "I107V", "Q112-", "Q113-", "E114-", "T115-", "Q116-", "K117Q", "A118Q", "A119E", "S121D", "N124K", "Q127P", "Y132F"], "p2": ["S8T", "A10G"], "p24": ["Q86P", "I96L", "S102G", "V148T", "P207Q"], "p6": ["A22T", "P23S", "K31R", "T35P", "A39T", "*50W"], "p7": ["R11K"], "pro": ["L10M", "G17E", "D37N", "Q61E", "V77I"], "rev": ["T8P", "Q14R", "P30S", "P31A", "H53R", "S54A", "I55L", "I59V", "S67P", "H82N", "R90G", "G99S", "V104G", "S106Y", "G108V", "V109L"], "tat": ["D2E", "N7K", "K19R", "A21E", "N40K", "H54P", "P73S", "T76V", "T77S", "T82P", "K85E", "E86K"], "vif": ["K63I", "V65I", "R93Q", "I98L", "S118T", "I128V", "P131H", "R132K", "Y135F", "T157K", "R160K", "R167K", "Q178R", "N186S"], "vpr": ["Q40H", "I63T", "Q77N", "I84L", "S93A"], "vpu": ["Q2N", "P3S", "A7S", "F27L", "R38A", "L43I", "D44N", "S57G", "P76H"]}, "labels": {"aa": "INT: S39N, L45V, V112I, R187K, D207E, T218I, D288N; RT-p51: I5V, E40D, I60V, K101Q, K104R, E138A, S162C, K174N, E177D, V276I, A286T, Y346F, P435L; RT-p66: I5V, E40D, I60V, K101Q, K104R, E138A, S162C, K174N, E177D, V276I, A286T, Y346F, P435L, V458I, T477A, Q520L, K558R; gp120: N4D, P23T, Q54K, -57F, K93Q, L97F, D105T, V106L, K107T, -109N, -110T, K127-, I137V, K141E, K143S, V153I, D157N, N159Q, -160V, S162E, Y163T, R164G, L165N, I166T, N167S, T172A, S181T, E183D, F195Y, L198V, R201N, Q210N, L237I, I244V, I249T, A253T, L260F, R276K, R280S, Q287K, A291T, T292N, G293N, D294I, D297N, Q300E, K307R, T308H, -311N, -312V, -318K, -322E, -323K, -324V, -326S, -327K, K329I, I331-, T332-, S335Q, S336P, R361K, -367F, -368I, -370G, -371N, -372D, -373S, -374K, -375D, -381E, -382S, R391K, R418S, N432L, N437-; gp41: I24V, R46T, H53R, I92T, D113N, Y127H, Q130L, E137Q, N140I, E143D, A156T, N160S, T208I, H211R, H212Q, D217A, E220G, G221E, E224G, G225E, R231K, I235V, F263L, S277R, G281A, W286G, L288I, V290F, Q294R, L304F, A322V, I329V, I332V, L345V; nef: S8R, G12E, E15A, T23A, Q50H, Q62G, Y81F, K104E, Q107K, Y120F, I133T, Y135F, A156L, E176G, L198K; p17: L34I, E55G, K62G, R91Q, V94I, E103A, I107V, Q112-, Q113-, E114-, T115-, Q116-, K117Q, A118Q, A119E, S121D, N124K, Q127P, Y132F; p2: S8T, A10G; p24: Q86P, I96L, S102G, V148T, P207Q; p6: A22T, P23S, K31R, T35P, A39T, *50W; p7: R11K; pro: L10M, G17E, D37N, Q61E, V77I; rev: T8P, Q14R, P30S, P31A, H53R, S54A, I55L, I59V, S67P, H82N, R90G, G99S, V104G, S106Y, G108V, V109L; tat: D2E, N7K, K19R, A21E, N40K, H54P, P73S, T76V, T77S, T82P, K85E, E86K; vif: K63I, V65I, R93Q, I98L, S118T, I128V, P131H, R132K, Y135F, T157K, R160K, R167K, Q178R, N186S; vpr: Q40H, I63T, Q77N, I84L, S93A; vpu: Q2N, P3S, A7S, F27L, R38A, L43I, D44N, S57G, P76H"}}}, {"name": "KT276261", "node_attrs": {"div": 0.17796999999999996, "accession": "KT276261", "clade_membership": {"value": "G"}, "country": {"value": "ES"}, "date": {"value": 2014.0}, "Strain_name": {"value": "ARP1201"}, "LANL_subtype": {"value": "G"}}, "branch_attrs": {"mutations": {"nuc": ["A161T", "T165G", "T201C", "-217T", "A263G", "-280G", "A371G", "A419G", "G424A", "A426T", "A437G", "G461T", "A516T", "A519C", "G524A", "G554A", "T560C", "A563G", "A566T", "G608A", "C636G", "G641T", "G642A", "A651C", "A654T", "A665C", "G675A", "A678G", "A684G", "-693A", "-694C", "-695A", "G696A", "A706G", "C722T", "T734C", "A776G", "A779G", "A791G", "A809C", "A818G", "G821A", "C824T", "A836G", "A860G", "T974C", "C978A", "A980G", "T983C", "C988A", "A989G", "G992A", "T1058C", "C1060A", "A1077G", "G1090A", "C1103T", "A1133C", "G1247A", "C1292G", "G1313A", "A1355G", "A1388G", "C1403T", "A1404G", "G1419A", "A1476G", "A1486G", "G1495A", "A1586T", "A1670G", "T1676C", "C1680G", "C1693T", "G1720T", "A1733G", "C1768A", "-1782T", "T1790C", "C1825A", "C1831T", "A1832G", "A1841G", "A1851G", "A1933G", "T2080C", "C2149A", "A2164G", "C2211A", "A2212T", "C2326T", "C2335T", "C2452T", "C2464T", "T2467C", "C2485T", "T2488C", "G2518A", "A2524G", "A2545C", "A2560G", "A2616G", "A2627T", "G2632A", "G2675A", "A2698G", "A2755G", "A2821G", "A2869G", "A2872G", "A2925G", "A2929G", "A2974G", "A2989G", "A3043G", "C3067A", "G3080A", "A3230G", "G3293C", "C3322T", "T3349C", "T3355C", "A3370G", "T3376C", "A3386C", "A3451G", "A3477G", "A3491G", "T3541C", "A3565G", "G3569A", "A3607G", "A3622G", "C3665A", "C3668T", "G3679A", "C3688T", "C3691T", "A3703G", "T3721A", "A3727T", "T3742C", "T3746C", "G3816A", "G3825A", "A3835G", "A3866G", "G3919A", "C3940T", "T3943C", "A4030G", "A4178G", "A4186G", "T4192C", "G4306A", "G4366A", "G4372A", "A4397C", "A4410C", "A4414C", "A4543C", "A4546T", "A4555G", "A4564G", "T4585C", "G4636A", "A4644G", "A4693G", "G4735A", "A4816G", "G4848A", "A4860G", "G4870A", "G4896A", "G4935A", "A4968T", "C5018T", "A5021G", "A5049C", "A5051G", "C5052T", "T5062C", "G5123A", "A5140G", "G5159A", "A5187G", "T5203C", "C5213A", "C5214T", "C5221A", "A5224G", "A5284C", "T5292G", "A5293C", "A5296G", "A5312G", "-5320T", "A5335G", "T5357C", "G5385A", "A5448G", "C5451T", "T5483C", "C5491T", "C5502G", "G5557A", "A5563C", "A5594G", "G5599A", "A5611C", "A5621T", "C5627T", "G5629T", "A5644G", "A5652T", "C5664A", "G5715A", "T5731A", "C5763T", "A5781G", "-5799T", "-5811G", "G5902A", "T5911A", "A5950C", "A5957C", "C5989A", "C6004T", "A6023G", "C6024A", "G6028A", "A6030T", "A6037G", "T6163C", "A6167G", "-6170T", "A6176-", "A6177-", "T6178-", "A6182-", "A6188G", "C6189G", "C6190G", "T6196C", "G6203C", "-6205C", "-6207G", "A6208C", "-6211G", "A6212C", "A6214G", "-6215A", "-6217G", "-6218G", "-6219A", "-6220A", "-6221G", "-6222A", "-6223A", "-6224C", "-6225C", "-6226A", "-6227A", "-6229A", "-6230T", "C6238T", "T6242A", "G6267A", "A6268C", "A6275C", "G6280A", "A6286G", "T6287C", "C6318A", "A6330G", "-6332G", "-6337T", "G6391A", "C6396G", "A6406T", "G6436A", "A6461G", "A6483T", "A6488C", "G6532A", "G6533A", "A6544G", "C6551T", "T6563G", "G6566A", "G6572A", "A6578G", "G6588A", "A6594C", "A6602T", "T6618A", "G6628A", "G6631A", "A6635G", "G6638A", "A6641G", "G6647A", "A6649C", "A6654C", "C6670T", "A6684G", "A6685G", "A6694G", "T6745C", "C6758T", "T6760C", "A6764T", "A6765G", "T6766G", "G6771A", "-6774A", "-6785C", "A6786T", "G6790C", "A6796G", "C6797G", "-6806C", "G6821C", "G6823A", "T6827C", "-6830A", "-6831A", "-6832C", "T6835C", "-6841A", "A6905G", "-6949G", "-6950A", "-6951G", "-6952C", "-6953A", "-6955A", "-6956T", "-6957C", "-6962A", "-6963T", "-6964C", "-6968A", "-6970A", "-6984C", "-6985A", "-6988C", "-6989A", "C7014T", "G7060A", "T7096C", "G7107T", "A7108G", "T7127A", "G7145A", "G7146T", "A7147T", "A7151G", "A7155G", "T7156C", "-7158C", "-7161G", "-7162A", "-7163G", "-7164G", "-7165T", "G7182C", "G7198A", "C7201T", "G7225A", "C7250T", "G7303A", "A7339G", "C7429T", "A7459C", "T7555C", "C7605G", "T7630G", "A7666T", "C7678T", "A7693C", "C7702A", "A7713C", "G7765A", "C7770A", "A7771C", "T7775C", "C7921T", "A7931C", "G7970A", "A7992G", "A7998G", "G8019A", "C8048T", "C8051A", "C8092T", "A8093G", "G8117C", "T8164C", "T8171G", "A8191G", "T8197G", "T8203A", "A8208G", "G8212A", "C8213G", "A8222T", "A8233T", "T8279G", "T8290C", "C8293T", "C8320G", "T8321G", "T8322C", "T8337A", "G8365A", "G8373T", "G8385A", "G8388A", "A8396G", "A8402G", "G8458A", "C8471G", "C8480T", "C8490G", "T8505G", "G8506T", "A8531T", "G8537T", "C8543G", "G8561A", "T8567C", "G8570A", "T8582C", "G8588A", "T8591A", "T8600C", "A8604G", "A8643G", "C8655A", "C8666G", "A8678C", "C8684T", "G8730A", "G8731A", "G8732A", "A8739G", "C8740T", "T8746A", "G8786A", "G8808A", "C8809A", "G8818A", "T8832C", "A8879G", "G8945C", "T9019G", "C9068T"], "INT": ["R14K", "S17N", "I31V", "I135V", "I208L", "E212A", "E256D"], "RT-p51": ["T39N", "K174R", "I178L", "E194K", "E207D", "K277R", "D324E", "V329I", "S379G", "V400L", "T431P"], "RT-p66": ["T39N", "K174R", "I178L", "E194K", "E207D", "K277R", "D324E", "V329I", "S379G", "V400L", "T431P", "K461R", "I466V", "E492K"], "gp120": ["D19E", "T35P", "-57D", "E59V", "V106S", "K107-", "N108-", "-111N", "-112G", "-113N", "-114S", "-115T", "-116S", "-122E", "-123E", "-124P", "-125K", "-126L", "S130T", "R138N", "K141Q", "Y145H", "P155Q", "N159S", "-160D", "R201K", "K203E", "Q210I", "K212Q", "V227I", "L237V", "A238T", "E240K", "I242V", "R245K", "E247A", "T250S", "I255N", "N261D", "E262K", "T263A", "E265N", "N267T", "K277R", "V288A", "T292K", "H302Y", "N304W", "S306N", "-311L", "-312N", "T313M", "Q315E", "-318Q", "-322K", "-324Q", "F325V", "-326L", "-327N", "T330N", "R351G", "-367I", "-368S", "-370I", "-379N", "-381T", "-382N", "T387I", "R418M", "L425I", "G431I", "N433S", "N434T", "-435G", "-436G", "G443A"], "gp41": ["V2A", "Q52H", "T101S", "D109E", "E121D", "Q130H", "S133T", "E137A", "A156D", "T210P", "E223K", "D230G", "D232G", "S239N", "I264V", "E272Q", "N298K", "N302S", "L304V", "I307L", "C326G", "L340A", "L345Q"], "nef": ["S8N", "E15K", "V16I", "I20M", "R39K", "Q50E", "C55V", "E63D", "S88G", "I101V", "Q105K", "D108E", "G130K", "I133V", "A156N", "G159E", "E201D"], "p17": ["R30K", "E42D", "M61L", "K62R", "L101V", "E102D", "E103K", "K106Q", "I107L", "K110N", "E114K", "T115A", "K117E", "N124S"], "p24": ["L83M", "T110N", "T116A", "S120N", "D187E", "S225G", "V230I"], "p6": ["L1V", "P5L", "S14I", "P24S", "P30Q", "T35S", "P49Q", "S51L"], "p7": ["S4G", "K7R", "R10K"], "pro": ["L10I", "T12A", "I15V", "Q18R"], "rev": ["Y28S", "R41Q", "S67L", "A68E", "H82C", "R90T", "G99R", "S106P", "K115E", "*117E"], "tat": ["V36A", "G61S", "K63Q", "L74F"], "vif": ["R17K", "T20A", "K36R", "R50K", "K77R", "E88K", "R92G", "S95N", "D104N", "E117K", "I128L", "T155P", "P156S", "I159T", "E185G"], "vpr": ["D7N", "A19T", "N28S", "P37I", "I63S", "I70V", "Q77R", "G94S"], "vpu": ["E5V", "A7F", "A8S", "I13V", "L42I"]}, "labels": {"aa": "INT: R14K, S17N, I31V, I135V, I208L, E212A, E256D; RT-p51: T39N, K174R, I178L, E194K, E207D, K277R, D324E, V329I, S379G, V400L, T431P; RT-p66: T39N, K174R, I178L, E194K, E207D, K277R, D324E, V329I, S379G, V400L, T431P, K461R, I466V, E492K; gp120: D19E, T35P, -57D, E59V, V106S, K107-, N108-, -111N, -112G, -113N, -114S, -115T, -116S, -122E, -123E, -124P, -125K, -126L, S130T, R138N, K141Q, Y145H, P155Q, N159S, -160D, R201K, K203E, Q210I, K212Q, V227I, L237V, A238T, E240K, I242V, R245K, E247A, T250S, I255N, N261D, E262K, T263A, E265N, N267T, K277R, V288A, T292K, H302Y, N304W, S306N, -311L, -312N, T313M, Q315E, -318Q, -322K, -324Q, F325V, -326L, -327N, T330N, R351G, -367I, -368S, -370I, -379N, -381T, -382N, T387I, R418M, L425I, G431I, N433S, N434T, -435G, -436G, G443A; gp41: V2A, Q52H, T101S, D109E, E121D, Q130H, S133T, E137A, A156D, T210P, E223K, D230G, D232G, S239N, I264V, E272Q, N298K, N302S, L304V, I307L, C326G, L340A, L345Q; nef: S8N, E15K, V16I, I20M, R39K, Q50E, C55V, E63D, S88G, I101V, Q105K, D108E, G130K, I133V, A156N, G159E, E201D; p17: R30K, E42D, M61L, K62R, L101V, E102D, E103K, K106Q, I107L, K110N, E114K, T115A, K117E, N124S; p24: L83M, T110N, T116A, S120N, D187E, S225G, V230I; p6: L1V, P5L, S14I, P24S, P30Q, T35S, P49Q, S51L; p7: S4G, K7R, R10K; pro: L10I, T12A, I15V, Q18R; rev: Y28S, R41Q, S67L, A68E, H82C, R90T, G99R, S106P, K115E, *117E; tat: V36A, G61S, K63Q, L74F; vif: R17K, T20A, K36R, R50K, K77R, E88K, R92G, S95N, D104N, E117K, I128L, T155P, P156S, I159T, E185G; vpr: D7N, A19T, N28S, P37I, I63S, I70V, Q77R, G94S; vpu: E5V, A7F, A8S, I13V, L42I"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000591", "node_attrs": {"div": 0.02384, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G10T", "T159A", "A161-", "A571T", "A706G", "A1733G", "G1736A", "T1783-", "A3037G", "G3391C", "A3463G", 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"D251N", "-385T", "-436T"], "gp41": ["N239S", "N251S", "W286G"], "nef": ["P53A"], "p1": ["N9H"], "p17": ["Y79F", "N124S", "Q127-"], "rev": ["K14R", "V104G", "A108V", "V109I"], "tat": ["K19T", "Y32W", "R57G"], "vif": ["I51V", "T67R", "R77K", "Q83H", "G101D", "S130R", "T151K", "K158R"], "vpr": ["I70V", "Q86G", "S94G"], "vpu": ["A11G", "I18L", "L33I", "V79-"]}, "labels": {"aa": "INT: E256D; RT-p51: E432D; RT-p66: E432D; gp120: K18R, I133M, I137L, K142Q, D251N, -385T, -436T; gp41: N239S, N251S, W286G; nef: P53A; p1: N9H; p17: Y79F, N124S, Q127-; rev: K14R, V104G, A108V, V109I; tat: K19T, Y32W, R57G; vif: I51V, T67R, R77K, Q83H, G101D, S130R, T151K, K158R; vpr: I70V, Q86G, S94G; vpu: A11G, I18L, L33I, V79-"}}, "children": [{"name": "NODE_0000592", "node_attrs": {"div": 0.05873, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G162-", "T163-", "G164-", "T165-", "A214T", "C362T", "A425G", "A654G", "A669C", "A749T", "C767T", "G771C", "G791A", "A810G", "C827T", 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"T8281G", "T8287C", "T8451C", "C8477T", "G8516A", "A8584T", "C8676T", "G8717A", "A8746T", "C8756T", "T8789C", "T8813C", "G8822A", "A8829T", "G8905C", "G8915A", "C8978A", "C9078T", "A9106G", "T9115C", "C9181A"], "RT-p51": ["T173K", "K174Q", "E177D", "A200T", "Q245E", "D248E"], "RT-p66": ["T173K", "K174Q", "E177D", "A200T", "Q245E", "D248E"], "gp120": ["Y33H", "N57H", "H77Q", "I80V", "-105N", "N161S", "T172V", "T174K", "V180I", "E183D", "F195Y", "T216S", "I249L", "Q259H", "E262K", "N272S", "K277T", "A288V", "A291R", "Q300K", "H302Y", "N304E", "S306N", "E309K", "Q315K", "R322K", "K323E", "N334Q", "S336P", "T345M", "S347H", "G351R", "S360T", "T387I", "R401G", "Q412S", "T416N", "N418V", "L424I", "D446N", "M447I", "R448K", "K462Q", "V468I"], "gp41": ["L4I", "V7M", "F8I", "L9F", "Q80K", "L81F", "I84L", "L91I", "N96S", "S102T", "D109E", "D113N", "D121E", "D129N", "I130Q", "N133E", "I135L", "E136T", "E143D", "Q147K", "A151E", "S165T", "V187I", "L209P", "P211H", "N212H", "I235V", "A281G", "N298I", "C326W"], "nef": ["D98E"], "p17": ["I107E", "K112Q"], "p2": ["A11-"], "p24": ["A14P", "I15L", "I27V", "P92A", "G225S"], "p6": ["G16R", "I21T", "P23T", "S24P"], "p7": ["-13V"], "rev": ["S8T", "K30S", "H53R", "S54A", "P67S", "G99R", "E116N"], "tat": ["N23S", "V36L", "Q54H", "Q76I"], "vif": ["G37K", "R47Q", "D61E", "R63K", "V66I", "H73Q", "K92R", "R93K", "V98I", "H110Q", "E117D", "H127Q", "I128V", "Q136P", "A137S", "I154T", "T159I", "R167K", "T180I", "G185E", "S186N", "H187P"], "vpr": ["H45Y", "R85P"], "vpu": ["Q2T", "A7S", "F16L", "F27A", "K37R", "D44K", "E62D", "V65A", "E66K", "-69V", "-70E", "-71M", "-72G", "-73D", "-74F", "-75D", "-78V", "-79G"]}, "labels": {"aa": "RT-p51: T173K, K174Q, E177D, A200T, Q245E, D248E; RT-p66: T173K, K174Q, E177D, A200T, Q245E, D248E; gp120: Y33H, N57H, H77Q, I80V, -105N, N161S, T172V, T174K, V180I, E183D, F195Y, T216S, I249L, Q259H, E262K, N272S, K277T, A288V, A291R, Q300K, H302Y, N304E, S306N, E309K, Q315K, R322K, K323E, N334Q, S336P, T345M, S347H, G351R, S360T, T387I, R401G, Q412S, T416N, N418V, L424I, D446N, M447I, R448K, K462Q, V468I; gp41: L4I, V7M, F8I, L9F, Q80K, L81F, I84L, L91I, N96S, S102T, D109E, D113N, D121E, D129N, I130Q, N133E, I135L, E136T, E143D, Q147K, A151E, S165T, V187I, L209P, P211H, N212H, I235V, A281G, N298I, C326W; nef: D98E; p17: I107E, K112Q; p2: A11-; p24: A14P, I15L, I27V, P92A, G225S; p6: G16R, I21T, P23T, S24P; p7: -13V; rev: S8T, K30S, H53R, S54A, P67S, G99R, E116N; tat: N23S, V36L, Q54H, Q76I; vif: G37K, R47Q, D61E, R63K, V66I, H73Q, K92R, R93K, V98I, H110Q, E117D, H127Q, I128V, Q136P, A137S, I154T, T159I, R167K, T180I, G185E, S186N, H187P; vpr: H45Y, R85P; vpu: Q2T, A7S, F16L, F27A, K37R, D44K, E62D, V65A, E66K, -69V, -70E, -71M, -72G, -73D, -74F, -75D, -78V, -79G"}}, "children": [{"name": "results/subtype_trees/CRF116_0108.nwk", "node_attrs": {"div": 0.11277999999999999, "clade_membership": {"value": "CRF116_0108"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "C379A", "C393A", "A417C", "A419T", "G424T", "G428A", "T434C", "A491G", "A503C", "C507A", "A509G", "T525C", "C539T", "T549A", "A554G", "A562G", "T572C", "T575C", "C587T", "C603G", "A604C", "A606G", "G614A", "A619G", "G629A", "T635C", "T641C", "A644G", "T655A", "G665A", "G667T", "C668T", "G677A", "C684A", "G690A", "C691A", "C694A", "T695G", "A697C", "C698T", "A701G", "A705-", "G706-", "C707-", "A708-", "G709-", "C710-", "G712-", "C722T", "C731T", "T749C", "A774C", "T852A", "C897T", "C902T", "G908A", "C950T", "G956A", "A959G", "T1001A", "A1002G", "T1004G", "A1070G", "G1109A", "A1151G", "G1173A", "T1174C", "T1182C", "G1192A", "A1205G", "T1229C", "A1242G", "C1243T", "C1245T", "G1268A", "A1274G", "G1301A", "G1313A", "C1362T", "G1394A", "T1409C", "T1421G", "T1444C", "C1447A", "A1448C", "C1453-", "A1454-", "-1458A", "-1459C", "G1476A", "T1484C", "G1487A", "G1493T", "-1503G", "-1504T", "-1505T", "G1508A", "A1526G", "C1541T", "G1568A", "G1619A", "A1622G", "T1679C", "T1682C", "A1709G", "A1715G", "T1729-", "G1731-", "G1732-", "G1733-", "G1734-", "A1735T", "A1736C", "A1740G", "C1741A", "A1742G", "-1746A", "-1747C", "-1748C", "C1751A", "T1752G", "G1766A", "A1777G", "C1782-", "T1787-", "T1790C", "G1794A", "A1832T", "A1841G", "A1849C", "C1853A", "G1858A", "A1867C", "T1873C", "G1942A", "T1978G", "A2029G", "T2035C", "T2071C", "A2075C", "T2080A", "T2086A", "T2087C", "T2101C", "T2107C", "A2182G", "A2210G", "C2211A", "A2212T", "T2237A", "A2242G", "A2254C", "C2263T", "T2266C", "G2273A", "G2287A", "A2290G", "A2305G", "A2329G", "C2353T", "G2363A", "T2369C", "T2383C", "A2419C", "T2443C", "A2482C", "A2498G", "G2578A", "C2596T", "C2605T", "T2653C", "C2720T", "G2725A", "A2734G", "A2752G", "A2788G", "A2842G", "C2845T", "T2890C", "T2908C", "G2914A", "A2932T", "A2950G", "G2980A", "C3023G", "T3045C", "C3067A", "A3070G", "A3076T", "A3097G", "T3121C", "G3127A", "T3133C", "A3151G", "T3170A", "A3196G", "A3208T", "A3214G", "C3225T", "A3226G", "G3264A", "C3266T", "C3271A", "A3274T", "A3280G", "A3292G", "G3307C", "G3316A", "A3334G", "G3340A", "C3346T", "C3359T", "T3368C", "T3380C", "A3382G", "C3391T", "T3399C", "G3427A", "C3449A", "A3454G", "T3466C", "A3484G", "C3485A", "A3487G", "G3491T", "G3523A", "A3532G", "C3542T", "T3545A", "G3556A", "C3589T", "A3607G", "C3649T", "T3652C", "G3664A", "G3667A", "A3684G", "A3697G", "C3712T", "C3751A", "C3756G", "G3796A", "A3808G", "A3817G", "G3846A", "T3865C", "C3889T", "A3952G", "T3991C", "C3994T", "T4024C", "A4027G", "G4060A", "A4105T", "C4132T", "G4145A", "A4219G", "A4243G", "T4276G", "G4354A", "T4441C", "G4573A", "G4642A", "T4655C", "G4677A", "G4689A", "C4754T", "G4779A", "C4844T", "A4865C", "A4869G", "A4951G", "A4966G", "G4978A", "C5006T", "A5065G", "A5090G", "T5147C", "A5159G", "A5246C", "C5248A", "T5412G", "A5421G", "A5462T", "C5530T", "G5532C", "G5545A", "A5555C", "A5581G", "A5587G", "A5689C", "G5699A", "C5756A", "A5781G", "C5802T", "A5817G", "T5851G", "A6043G", "C6067A", "T6072C", "C6097T", "G6121A", "-6170G", "-6172T", "-6174A", "T6181C", "A6186T", "T6187C", "C6190T", "A6191G", "T6193C", "C6196T", "A6197G", "-6198A", "T6199C", "-6201C", "-6202T", "-6203A", "-6205C", "-6207G", "-6208A", "-6210T", "-6211A", "-6212G", "-6213G", "-6222C", "-6225A", "-6226T", "-6230G", "T6242A", "C6278A", "T6301C", "C6317A", "C6318A", "T6322A", "-6340G", "T6373C", "A6375G", "A6616G", "T6637C", "G6693C", "T6745C", "A6791G", "C6792T", "G6806A", "T6849A", "C6850A", "C6938T", "G6948A", "C6951G", "-6955C", "-6956A", "-6957C", "-6958A", "-6959A", "-6960A", "-6986G", "-6987A", "-6988A", "-6989A", "-6990C", "-6991C", "-6993T", "-6994G", "-6995G", "-6996A", "-6997G", "-6998T", "-6999G", "-7000T", "-7001A", "-7002A", "-7003T", "-7005A", "G7058A", "A7095T", "-7164C", "A7186G", "G7269A", "A7540G", "G7589T", "T7604C", "C7605A", "G7631C", "G7640A", "A7660G", "A7689G", "G7700C", "G7720A", "A7734G", "G7735A", "C8037T", "A8069C", "G8070T", "T8094C", "G8130A", "T8182A", "G8255A", "G8267A", "A8275G", "A8288T", "C8294A", "C8311A", "A8323T", "A8327G", "G8328C", "G8329A", "T8337A", "C8342A", "G8375T", "A8386C", "G8387T", "G8388A", "C8390A", "G8393A", "C8406A", "C8412G", "C8413A", "T8414G", "A8426T", "A8429G", "A8432G", "A8446G", "T8450C", "A8453G", "T8456A", "T8480C", "T8483C", "-8487G", "-8490G", "A8531G", "A8540G", "C8543T", "G8558T", "T8594A", "T8636A", "C8640T", "A8660G", "A8729G", "G8732A", "A8762G", "A8801G", "A8823G", "C8831T", "C8832T", "G8834A", "T8835C", "G8846C", "C8867T", "A8870G", "G8871C", "G8873T", "G8882A", "C8883T", "T8887A", "C8905A", "C8906A", "A8915C", "A8930C", "G8936A", "C8948T", "A8970G", "G8971A", "T8972-", "A8978G", "C8979A", "T8993A", "G8994A", "A8998-", "T9000G", "A9009-", "C9017T", "A9026G", "G9027A", "T9028C", "G9033-", "C9039T", "T9040C"], "INT": ["S24N", "I84M", "A124T", "D167E"], "RT-p51": ["T39D", "S48T", "E53D", "V60I", "V90I", "I135V", "L310V", "V317A", "D324E", "D335G", "S359T", "T377M", "R390K", "E404D", "V435A"], "RT-p66": ["T39D", "S48T", "E53D", "V60I", "V90I", "I135V", "L310V", "V317A", "D324E", "D335G", "S359T", "T377M", "R390K", "E404D", "V435A", "Q464K", "V466I", "H483Y", "L484I", "K530R"], "gp120": ["N71K", "V73A", "-107N", "-111N", "-124D", "I126V", "K127R", "S130T", "L137I", "Q142K", "P155K", "I156M", "K174R", "T313V", "A318T", "I332K", "S365-", "T366S", "W367C", "-381E", "-382C", "-383N", "-384D", "V402T", "N414K", "N435S", "N437T"], "gp41": ["S101H", "E110Q", "N129S", "E133Q", "K144R", "D230G", "A245V", "S256L", "I264T", "V318I", "V322I", "I329F", "H331N", "R342A", "L345Q"], "nef": ["E15A", "P24E", "E28D", "Q35R", "D38E", "Y81F", "I133V", "Y135F", "N161D", "E177H", "M182K", "S188Q"], "p17": ["A15K", "K28H", "R30M", "Q58K", "S72T", "K76R", "Q90A", "R91G", "K95R", "S111I", "Q117K", "A119K", "A120E", "D121A", "S124-", "S125-", "S126-"], "p2": ["V7A", "T8N", "-12T"], "p24": ["S41T", "I91V", "V148T", "R154K", "T171V", "E180D", "E187D"], "p6": ["G18-", "E19-", "T21E", "P25A", "-26P", "K33R", "L35-", "Y36-"], "p7": ["G4S", "Q9S", "L24I"], "pro": ["T12S", "I15V", "L19I", "D60E", "L63P", "I93L"], "rev": ["G6S", "T8V", "Q74P", "S112T"], "tat": ["N12K", "K29I", "G57R", "Q60P", "I69V", "K71E"], "vif": ["R19K", "V31I", "A35T", "V65I", "K93N", "S95G", "K122R", "Q127R", "P131H", "K160R"], "vpr": ["Y15H", "T19A", "N48Q"], "vpu": ["I28L", "R31K", "A50E", "L82V"]}, "labels": {"aa": "INT: S24N, I84M, A124T, D167E; RT-p51: T39D, S48T, E53D, V60I, V90I, I135V, L310V, V317A, D324E, D335G, S359T, T377M, R390K, E404D, V435A; RT-p66: T39D, S48T, E53D, V60I, V90I, I135V, L310V, V317A, D324E, D335G, S359T, T377M, R390K, E404D, V435A, Q464K, V466I, H483Y, L484I, K530R; gp120: N71K, V73A, -107N, -111N, -124D, I126V, K127R, S130T, L137I, Q142K, P155K, I156M, K174R, T313V, A318T, I332K, S365-, T366S, W367C, -381E, -382C, -383N, -384D, V402T, N414K, N435S, N437T; gp41: S101H, E110Q, N129S, E133Q, K144R, D230G, A245V, S256L, I264T, V318I, V322I, I329F, H331N, R342A, L345Q; nef: E15A, P24E, E28D, Q35R, D38E, Y81F, I133V, Y135F, N161D, E177H, M182K, S188Q; p17: A15K, K28H, R30M, Q58K, S72T, K76R, Q90A, R91G, K95R, S111I, Q117K, A119K, A120E, D121A, S124-, S125-, S126-; p2: V7A, T8N, -12T; p24: S41T, I91V, V148T, R154K, T171V, E180D, E187D; p6: G18-, E19-, T21E, P25A, -26P, K33R, L35-, Y36-; p7: G4S, Q9S, L24I; pro: T12S, I15V, L19I, D60E, L63P, I93L; rev: G6S, T8V, Q74P, S112T; tat: N12K, K29I, G57R, Q60P, I69V, K71E; vif: R19K, V31I, A35T, V65I, K93N, S95G, K122R, Q127R, P131H, K160R; vpr: Y15H, T19A, N48Q; vpu: I28L, R31K, A50E, L82V", "clade": "CRF116_0108"}}, "children": [{"name": "MT624749", "node_attrs": {"div": 0.13058999999999998, "accession": "MT624749", "clade_membership": {"value": "CRF116_0108"}, "country": {"value": "CN"}, "date": {"value": 2016.0}, "Strain_name": {"value": "16YN253"}, "LANL_subtype": {"value": "CRF116_0108"}}, "branch_attrs": {"mutations": {"nuc": ["A500T", "G607A", "T978G", "T1172C", "A1226G", "A1355G", "A1361T", "A1397G", "A1433G", "A1449C", "A1461G", "G1713A", "C1714T", "G1760A", "C1768A", "A1966T", "T2212G", "G2219A", "C2419T", "G2530A", "A2560G", "G2707A", "A2710G", "C2828G", "G2951A", "G3085A", "A3120T", "G3142A", "A3449T", "T3491A", "C3610A", "C3688T", "A3772G", "G3786A", "T3850C", "C4021A", "G4229A", "G4237A", "C4428T", "A4498C", "G4673T", "T4674C", "T4702C", "C4902T", "C4911T", "T5424C", "A5447C", "C5532A", "A5535T", "A5563G", "A5594G", "C5602T", "T5648C", "G5737A", "G5963A", "C5989A", "C6004T", "G6079A", "C6165G", "G6170T", "T6172G", "A6174C", "C6183A", "T6190A", "A6192C", "A6200C", "-6204A", "-6215A", "-6216A", "-6217T", "-6218A", "-6219T", "-6220A", "A6278G", "G6303A", "A6322G", "A6324G", "T6325A", "A6339G", "G6340T", "C6397T", "G6425A", "A6525G", "A6574C", "A6640G", "C6693A", "A6796G", "A6800C", "-6833A", "-6834T", "-6835T", "C6857A", "C6858A", "C6862T", "A6900C", "C6925T", "C6957T", "-6961T", "G7026A", "A7096G", "T7102G", "A7148G", "A7149G", "A7155G", "A7158C", "A7160-", "A7161-", "C7170T", "A7256G", "G7309A", "C7463A", "C7597T", "A7693C", "A7709G", "A7721G", "A8011C", "C8044A", "G8050A", "C8063A", "C8095A", "A8219G", "A8241G", "T8243G", "G8245A", "T8288C", "C8291T", "C8296T", "G8520A", "A8525G", "T8539A", "G8678A", "T8740C", "T8756C", "T8786C", "A8812G", "G8875A", "G8970-", "A8971-", "T8973-", "C8975-", "T8976-", "A8977-", "G8978-", "A8979-"], "INT": ["G4E", "E152K", "M154I", "T218I"], "RT-p51": ["D39E", "E42K", "A286T", "Y342F"], "RT-p66": ["D39E", "E42K", "A286T", "Y342F"], "gp120": ["V37M", "T104S", "-106V", "N107K", "-109D", "T110P", "N113-", "-118R", "-119I", "-120G", "-121N", "-122I", "-123T", "K142E", "D157G", "A191T", "K224R", "E240D", "D294E", "K319E", "-326I", "N328-", "P335K", "N349T", "-365N", "-368I", "-370E", "-371T", "-372M", "R391K", "T402I", "K414M", "N416K", "N432G", "T439I", "I468V"], "gp41": ["Q130H", "T136A", "N140D", "D247E", "L254I", "T306A", "E313G", "W314G", "F329L", "L330F"], "nef": ["T23A", "A60T", "V133T", "N157S", "R178K"], "p17": ["E55D", "G91E"], "p2": ["N9H", "I13V"], "p24": ["L83V"], "p6": ["A12M", "P30Q"], "p7": ["S9P"], "rev": ["D7E", "I55L", "A68T", "P72H", "L83I"], "tat": ["K24T", "R52F", "H54S", "K63E"], "vif": ["M29I", "Y30H", "F39S"], "vpu": ["V14A"]}, "labels": {"aa": "INT: G4E, E152K, M154I, T218I; RT-p51: D39E, E42K, A286T, Y342F; RT-p66: D39E, E42K, A286T, Y342F; gp120: V37M, T104S, -106V, N107K, -109D, T110P, N113-, -118R, -119I, -120G, -121N, -122I, -123T, K142E, D157G, A191T, K224R, E240D, D294E, K319E, -326I, N328-, P335K, N349T, -365N, -368I, -370E, -371T, -372M, R391K, T402I, K414M, N416K, N432G, T439I, I468V; gp41: Q130H, T136A, N140D, D247E, L254I, T306A, E313G, W314G, F329L, L330F; nef: T23A, A60T, V133T, N157S, R178K; p17: E55D, G91E; p2: N9H, I13V; p24: L83V; p6: A12M, P30Q; p7: S9P; rev: D7E, I55L, A68T, P72H, L83I; tat: K24T, R52F, H54S, K63E; vif: M29I, Y30H, F39S; vpu: V14A"}}}, {"name": "CRF116_0108_NODE_0000001", "node_attrs": {"div": 0.11486999999999999, "clade_membership": {"value": "CRF116_0108"}}, "branch_attrs": {"mutations": {"nuc": ["G463A", "G519A", "A540C", "A618C", "A663G", "C1061T", "A1359T", "C1491T", "C1680A", "A1861G", "T2062C", "A2170C", "A2202C", "T2440C", "G2459A", "T2631A", "G2830T", "A3124G", "T3492G", "G3631A", "A4000G", "G4464A", "C4826A", "A4900G", "G5087A", "A5302G", "G5531T", "A5711G", "A6167T", "A6168C", "T6184A", "A6185G", "C6189A", "A6275C", "A6338G", "A6394G", "A6430G", "C6692A", "A6785T", "A6810G", "A6891T", "T7059C", "A7297G", "A7542C", "T7801A", "A7880G", "G8036T", "A8076G", "A8739G", "G8864T", "A8967C", "C8990T"], "INT": ["S230N"], "RT-p51": ["E36A", "E122K", "V179D", "E245H"], "RT-p66": ["E36A", "E122K", "V179D", "E245H", "L452I", "I466C"], "gp120": ["K141Q", "K150R", "S162E", "I180M", "H280T", "N311Y", "Q316K", "H346L"], "gp41": ["M54L", "K80T", "N166K", "I193V", "V245F", "H258R"], "nef": ["E174D"], "p17": ["R43K", "E62K", "K69Q", "K110E"], "p24": ["T210S"], "p6": ["L1I"], "rev": ["C63F"], "vif": ["H80Q", "Q105R"], "vpu": ["K35R", "K44E"]}, "labels": {"aa": "INT: S230N; RT-p51: E36A, E122K, V179D, E245H; RT-p66: E36A, E122K, V179D, E245H, L452I, I466C; gp120: K141Q, K150R, S162E, I180M, H280T, N311Y, Q316K, H346L; gp41: M54L, K80T, N166K, I193V, V245F, H258R; nef: E174D; p17: R43K, E62K, K69Q, K110E; p24: T210S; p6: L1I; rev: C63F; vif: H80Q, Q105R; vpu: K35R, K44E"}}, "children": [{"name": "MT624747", "node_attrs": {"div": 0.13058999999999998, "accession": "MT624747", "clade_membership": {"value": "CRF116_0108"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14YN263"}, "LANL_subtype": {"value": "CRF116_0108"}}, "branch_attrs": {"mutations": {"nuc": ["G375A", "T396G", "A404G", "C426A", "A428G", "G495T", "A613G", "A652C", "G695T", "A905C", "A1157G", "G1543A", "A1619G", "T1653G", "C1706T", "C1768T", "A1903T", "G2156A", "T2251A", "C2464T", "G2669A", "A2764G", "T2845C", "G3037C", "C3133T", "C3223T", "G3442A", "A3449G", "G3487A", "A3489G", "A3508G", "A3543G", "T3566C", "A3651C", "G3756A", "T3779C", "G3808T", "G3869A", "G3896A", "A4057G", "G4176A", "A4555G", "A4658G", "T4701G", "C4728A", "G4764T", "G4856A", "T4907A", "T4991C", "A5112G", "G5159A", "C5246T", "A5248C", "T5292C", "A5305G", "T5333C", "G5448C", "T5462A", "C5578T", "T5606G", "C5653A", "C5658A", "T5684C", "A5699G", "G5717A", "A5718G", "A5756C", "T5797-", "T5798-", "G5799-", "G5800T", "C5801T", "T5802G", "A5803G", "A5804C", "A5805C", "C5806A", "T5807G", "T5808A", "-5809C", "-5810T", "-5811T", "G5817A", "A5867G", "T5870C", "G5954T", "A5955C", "T5964C", "G6088C", "C6166T", "T6171C", "T6186C", "G6191A", "A6194G", "A6200T", "A6203T", "-6204G", "G6207A", "-6215A", "-6216A", "-6217T", "-6218A", "-6219T", "-6220A", "A6281G", "G6283A", "A6311T", "T6328C", "A6333C", "G6345T", "T6466G", "A6484G", "G6526A", "A6605G", "T6676G", "A6685G", "T6688A", "A6691G", "-6697G", "A6703-", "A6715C", "G6732A", "A6734G", "T6735C", "A6736C", "G6764A", "A6767G", "A6779G", "G6809A", "A6820G", "A6913G", "A6947G", "-6961C", "G7004A", "A7036G", "T7095A", "G7106C", "A7149T", "A7158G", "A7161C", "-7162T", "C7164A", "G7366A", "A7373T", "A7375G", "G7540A", "A7685T", "G7689A", "G7717A", "A7800G", "T8035C", "T8113G", "T8196C", "A8260T", "G8356T", "G8531T", "G8540A", "C8552A", "T8584A", "G8590C", "C8651T", "T8685C", "A8812C", "A8858G", "G8870T", "A8874G", "A8924G", "-8972G", "T8973A", "-8974A"], "INT": ["E11D", "V32I", "D41N", "G134D"], "RT-p51": ["V21I", "D192N"], "RT-p66": ["V21I", "D192N", "I452V", "K465R", "Y483C", "S491P", "N519T", "S554N"], "gp120": ["N5D", "E34S", "V37A", "E78D", "N105S", "-106A", "-109V", "N111A", "-112N", "-114D", "-115D", "-116S", "-117C", "-118K", "-119I", "-120G", "-121N", "-122I", "-123T", "K143E", "I153L", "N160T", "R164M", "N204K", "N251D", "N274K", "S278R", "I279M", "I281M", "Q287H", "G293E", "D294A", "E304K", "I305V", "K309E", "K319R", "N327-", "-365D", "-368T", "-370E", "-371T", "-372M", "D384N", "V418L", "N432I", "-433N", "T437N"], "gp41": ["I24L", "T128S", "S129N", "K166R", "I298T"], "nef": ["W5L", "E63D", "F81Y", "G83A", "Y115H", "N157T", "E176D", "R178G", "I194M"], "p1": ["S8A"], "p17": ["D14N", "L21V", "L31M", "A54S", "E93G", "E106A", "E120D"], "p6": ["P30L"], "p7": ["R26K"], "pro": ["E35D"], "rev": ["V8A", "F63L", "C89G"], "tat": ["K24N", "I29K", "P68S"], "vif": ["F39V", "H48N", "G60W", "K176E"], "vpr": ["Q3R", "A19T", "Q48Y", "I63T"], "vpu": ["L16I", "V26A", "K31R", "R37K", "E50A", "K66R"]}, "labels": {"aa": "INT: E11D, V32I, D41N, G134D; RT-p51: V21I, D192N; RT-p66: V21I, D192N, I452V, K465R, Y483C, S491P, N519T, S554N; gp120: N5D, E34S, V37A, E78D, N105S, -106A, -109V, N111A, -112N, -114D, -115D, -116S, -117C, -118K, -119I, -120G, -121N, -122I, -123T, K143E, I153L, N160T, R164M, N204K, N251D, N274K, S278R, I279M, I281M, Q287H, G293E, D294A, E304K, I305V, K309E, K319R, N327-, -365D, -368T, -370E, -371T, -372M, D384N, V418L, N432I, -433N, T437N; gp41: I24L, T128S, S129N, K166R, I298T; nef: W5L, E63D, F81Y, G83A, Y115H, N157T, E176D, R178G, I194M; p1: S8A; p17: D14N, L21V, L31M, A54S, E93G, E106A, E120D; p6: P30L; p7: R26K; pro: E35D; rev: V8A, F63L, C89G; tat: K24N, I29K, P68S; vif: F39V, H48N, G60W, K176E; vpr: Q3R, A19T, Q48Y, I63T; vpu: L16I, V26A, K31R, R37K, E50A, K66R"}}}, {"name": "MT624748", "node_attrs": {"div": 0.12785, "accession": "MT624748", "clade_membership": {"value": "CRF116_0108"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14YN264"}, "LANL_subtype": {"value": "CRF116_0108"}}, "branch_attrs": {"mutations": {"nuc": ["A613C", "G651A", "A908T", "T988C", "T992G", "A1101G", "A1142G", "G1151A", "T1262C", "G1354C", "A1476G", "T1482C", "G1715A", "G1720A", "A1804G", "A2113C", "A2127G", "A2925G", "T2935C", "C3128A", "G3151A", "A3264G", "G3280A", "C3307A", "A3448G", "C3466T", "T3544C", "A3622G", "C3665G", "G3684A", "G3697A", "T3904C", "G3952A", "T4117C", "T4198C", "A4239C", "A4498G", "A4677G", "A4689G", "A4695C", "A4760G", "G4769A", "C4820T", "G4869A", "A4913G", "G4966A", "A4994C", "A5124G", "C5147T", "A5154C", "A5223T", "G5236A", "G5312A", "T5354C", "G5385A", "G5418A", "A5453T", "A5499G", "A5545G", "A5611T", "A5622G", "A5623C", "G5700A", "G5729A", "A6113G", "C6187T", "A6194T", "A6195C", "G6197A", "A6198C", "C6201A", "T6202C", "-6204T", "C6205A", "A6206G", "T6210A", "A6211T", "G6212C", "G6213T", "A6225G", "G6234A", "G6277A", "A6317C", "A6333G", "G6375A", "C6563T", "A6581G", "A6638G", "A6806G", "C6824A", "-6833C", "-6834C", "-6835T", "A6839G", "A6849G", "A6850C", "T6876C", "A6937T", "G6951A", "A6960G", "-6985A", "G6986A", "A6988T", "A6989G", "C6990A", "C6991A", "T6993C", "G6994C", "G6995A", "G6997A", "T6998G", "T7000G", "A7001T", "A7002G", "A7005G", "C7019A", "C7020T", "A7152T", "-7162G", "A7269G", "C7631G", "A7655G", "T7708C", "A8032T", "G8055A", "T8113A", "G8239A", "A8271G", "A8294C", "A8337T", "T8366G", "A8400T", "A8458G", "A8469G", "G8738A", "T8746A", "C8809A", "G8823A", "T8829A", "T8831C", "A8844G", "G8914A", "A8922G", "-8972C", "-8974G", "T9012A"], "INT": ["N155T"], "RT-p51": ["E6D", "K11R", "K277R", "P345T", "K390R", "D404E"], "RT-p66": ["E6D", "K11R", "K277R", "P345T", "K390R", "D404E", "Q524E", "R530K"], "gp120": ["S87G", "N105D", "-106S", "N107T", "-109I", "T110G", "-112L", "N113T", "D124G", "R127K", "K155Q", "N160S", "R174K", "I243V", "K262E", "T318A", "K319G", "H324N", "-326P", "N328E", "K329-", "K332S", "L341P", "K361N", "S366-", "C367-", "N369-", "-378N", "-379N", "-380C", "E381T", "C382R", "D384E", "P389I", "K414I", "-433I", "S435N", "T436K", "K472R"], "gp41": ["Q110E", "I118V", "S251N", "R277L", "Q323R", "N331H", "Q345L"], "nef": ["S8R", "I20L", "G29A", "K39R", "I43V", "F135Y", "A156D", "D161N", "C163S", "I168V", "R191H", "I194V"], "p17": ["E93A", "E106K"], "p24": ["V86A", "H87Q", "I124V", "G208A"], "p6": ["S14N", "K42R"], "p7": ["S4G", "F6L"], "rev": ["T62S", "C89S"], "tat": ["Y26F", "R57G"], "vif": ["I31V", "T35A", "K37Q", "G95S", "R127Q", "I180V", "N190H"], "vpr": ["D7G", "H15Y", "E17A", "H40L", "V70I", "G94S"], "vpu": ["T2S", "I6L", "R41K"]}, "labels": {"aa": "INT: N155T; RT-p51: E6D, K11R, K277R, P345T, K390R, D404E; RT-p66: E6D, K11R, K277R, P345T, K390R, D404E, Q524E, R530K; gp120: S87G, N105D, -106S, N107T, -109I, T110G, -112L, N113T, D124G, R127K, K155Q, N160S, R174K, I243V, K262E, T318A, K319G, H324N, -326P, N328E, K329-, K332S, L341P, K361N, S366-, C367-, N369-, -378N, -379N, -380C, E381T, C382R, D384E, P389I, K414I, -433I, S435N, T436K, K472R; gp41: Q110E, I118V, S251N, R277L, Q323R, N331H, Q345L; nef: S8R, I20L, G29A, K39R, I43V, F135Y, A156D, D161N, C163S, I168V, R191H, I194V; p17: E93A, E106K; p24: V86A, H87Q, I124V, G208A; p6: S14N, K42R; p7: S4G, F6L; rev: T62S, C89S; tat: Y26F, R57G; vif: I31V, T35A, K37Q, G95S, R127Q, I180V, N190H; vpr: D7G, H15Y, E17A, H40L, V70I, G94S; vpu: T2S, I6L, R41K"}}}]}]}, {"name": "NODE_0000595", "node_attrs": {"div": 0.06634, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A399C", "C435T", "C456T", "T467C", "A530G", "C531T", "G534A", "-711A", "-713C", "-714A", "T944A", "T1237A", "T1253C", "C1292A", "G1339A", "-1457T", "C1460-", "C1492A", "G1835A", "A1981G", "A2098C", "C2199T", "C2335T", "T2776C", "C2828G", "A3019G", "A3162G", "G3595A", "C4021A", "G4766A", "T5357A", "G5534A", "A5535G", "C5602T", "G5737A", "T6148C", "A6229-", "G6303A", "C6364T", "G6425A", "C6446T", "A6788G", "A6800C", "C7703A", "C7939T", "G8050A", "A8219G", "A8241G", "T8268C", "G8348A", "G8385C", "A8405G", "C8471A", "C8485T", "C8488-", "A8489-", "C8491-", "T8492-", "C8494A", "C8509T", "A8555G", "C8603T", "G8678A", "A8701T", "A8754T", "C8755G", "G8795A", "A8804G", "G8814A", "T8843C", "T8847A", "A8885G", "T8903C", "G8933A", "T8947A", "C8966A", "-8974T", "A8980T", "T8988-", "T9019G"], "INT": ["I101L"], "RT-p51": ["T35V", "P272A", "K356R"], "RT-p66": ["T35V", "P272A", "K356R"], "gp120": ["A191T", "K312E", "N369-", "K472R"], "gp41": ["S96A", "L134I", "I210T", "T306A", "E313G", "V322A", "F340L"], "nef": ["E15Q", "I16V", "T48I", "A49N", "A50-", "T51-", "A56V", "T138C", "A156D", "E158K", "I168M", "C169S", "F202Y"], "p17": ["L31M", "P66S", "A67T", "-127K"], "p24": ["D71E", "F169Y", "R203K"], "pro": ["V13I"], "rev": ["D7S", "P31S", "R39K", "A68T"], "tat": ["R53K", "T77I"]}, "labels": {"aa": "INT: I101L; RT-p51: T35V, P272A, K356R; RT-p66: T35V, P272A, K356R; gp120: A191T, K312E, N369-, K472R; gp41: S96A, L134I, I210T, T306A, E313G, V322A, F340L; nef: E15Q, I16V, T48I, A49N, A50-, T51-, A56V, T138C, A156D, E158K, I168M, C169S, F202Y; p17: L31M, P66S, A67T, -127K; p24: D71E, F169Y, R203K; pro: V13I; rev: D7S, P31S, R39K, A68T; tat: R53K, T77I"}}, "children": [{"name": "NODE_0000596", "node_attrs": {"div": 0.07302, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A592G", "T593G", "T602C", "A752G", "A1263T", "A1346G", "G1354C", "G1664A", "A2198G", "G2578A", "C2605T", "G2707A", "A2710G", "G2714C", "C2930T", "G2951A", "C2968A", "A2969G", "G2980A", "T2983A", "A2995G", "G3037A", "A3046G", "A3088G", "T3170G", "C3171G", "G3316A", "C3359T", "A3364G", "C3391A", "C3449T", "G3463A", "T3496C", "A3508C", "A3529G", "C3567T", "T3695G", "T3799C", "C3826T", "T3856C", "A3866G", "G3916A", "T3962C", "C4181A", "-6174C", "-7001A", "-7003T", "G7735A", "C8037T"], "INT": ["I31V", "Q136K"], "RT-p51": ["E207Q", "A286T", "D291E", "I292V", "D335G", "S359G", "D432E"], "RT-p66": ["E207Q", "A286T", "D291E", "I292V", "D335G", "S359G", "D432E", "E471D", "S491L", "S534A"], "gp120": ["H57P", "S162E"], "nef": ["Y135F"], "p17": ["Y86W"], "p24": ["T178S", "G208A"], "p6": ["T39A"]}, "labels": {"aa": "INT: I31V, Q136K; RT-p51: E207Q, A286T, D291E, I292V, D335G, S359G, D432E; RT-p66: E207Q, A286T, D291E, I292V, D335G, S359G, D432E, E471D, S491L, S534A; gp120: H57P, S162E; nef: Y135F; p17: Y86W; p24: T178S, G208A; p6: T39A"}}, "children": [{"name": "results/subtype_trees/CRF103_01B.nwk", "node_attrs": {"div": 0.12598, "clade_membership": {"value": "CRF103_01B"}}, "branch_attrs": {"mutations": {"nuc": ["-217T", "A303T", "A356C", "G361C", "C393A", "C426A", "G452A", "C467T", "C483T", "A512G", "A513T", "G524A", "G579A", "A585G", "C586T", "G614A", 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"A4976G", "G4978A", "A4994C", "T5028C", "A5048T", "G5060A", "A5065G", "T5125C", "A5148T", "T5162C", "C5168T", "G5176A", "G5236A", "A5269G", "A5290G", "T5293A", "A5355G", "A5357G", "G5385A", "C5438A", "G5448T", "C5579T", "G5599A", "G5619A", "T5636C", "A5640G", "C5641T", "A5644G", "G5668A", "G5699A", "G5739A", "A5848C", "T5851G", "G5893A", "G5915A", "C5974T", "C5984T", "C6004T", "C6026A", "G6079A", "T6101C", "C6166T", "-6172G", "A6176C", "T6181C", "T6184C", "T6187C", "-6198A", "-6201C", "-6203T", "-6204G", "-6205G", "A6206T", "-6207C", "-6208T", "-6210A", "-6211C", "-6212C", "-6213A", "-6215A", "-6216T", "-6217A", "-6218G", "-6219G", "-6220A", "-6222A", "-6225A", "-6226T", "-6229A", "-6230G", "G6260T", "A6261T", "A6263T", "G6267C", "G6280A", "T6287C", "G6323A", "-6340G", "G6345A", "G6451A", "C6482A", "T6504G", "G6547A", "C6607T", "A6616G", "A6648T", "A6649G", "C6692A", "A6703-", "A6714G", "G6716A", "T6717C", "A6752C", "G6764A", "A6765C", "G6766A", "A6798G", "C6807T", "G6809A", "T6829C", "-6833A", "-6834A", "-6835G", "T6838C", "A6842T", "C6850A", "T6853C", "A6856G", "C6861A", "A6881G", "T6943C", "-6955G", "-6974C", "-6975A", "-6976T", "-6977G", "-6978A", "-6979A", "-6980G", "-6981A", "-6982G", "-6983G", "-6984A", "-6985A", "-6986A", "-6987A", "-6988T", "-6989A", "-6991C", "-7002G", "-7005A", "A7013G", "C7024T", "A7042C", "G7054A", "G7056A", "T7059C", "A7095T", "T7102C", "A7155C", "A7234G", "G7269A", "G7291C", "G7309A", "G7441A", "C7463A", "T7466C", "G7508A", "A7531G", "A7541C", "A7570C", "C7597T", "C7603T", "A7607T", "A7641G", "A7676G", "A7689C", "G7702A", "T7747G", "T7748C", "G7790A", "A7791G", "T7801C", "T7852C", "A7858G", "G7873A", "C7926T", "A7931T", "T7932C", "T7936C", "G7957A", "C7959T", "G7964A", "G7992A", "A8011C", "A8023G", "G8036A", "C8048A", "A8050C", "A8143G", "G8144A", "T8164C", "T8171G", "G8180A", "T8196C", "C8213T", "T8214A", "G8216A", "A8222G", "C8223T", "G8231A", "G8239A", "G8254A", "A8272G", "A8273G", "A8288T", "A8305G", "G8387A", "G8404A", "C8406A", "T8456C", "A8486C", "G8528A", "A8531C", "G8537A", "C8543T", "G8555A", "G8558C", "T8585C", "G8588A", "T8607C", "T8608A", "T8636A", "C8640T", "T8646C", "A8652C", "G8666A", "T8676C", "A8678G", "T8687C", "T8701A", "A8717C", "T8740C", "C8747T", "T8754A", "G8755C", "T8756C", "A8762G", "C8775T", "A8777G", "G8784C", "A8793G", "A8795G", "G8796C", "A8798G", "G8804A", "A8812C", "C8813T", "A8822G", "A8824C", "C8832T", "C8843T", "G8846A", "G8848A", "G8864T", "G8868C", "A8869C", "C8883T", "G8885A", "G8894A", "C8905G", "A8909C", "G8914T", "A8915T", "A8916C", "A8918T", "C8948T", "A8954G", "A8966T", "A8967T", "A8970G", "G8971C", "A8978C", "C8979A", "T8980A", "-8988T", "G8991A", "G8997-", "A8998-", "C8999-", "T9000-", "T9001-", "T9002-", "C9003-", "C9004-", "A9005-", "G9006-", "G9007-", "G9008-", "G9019T", "A9026G", "G9027A", "T9028C", "T9029C", "T9040G", "C9068T", "T9074C", "C9075T", "T9097G", "G9132A", "C9148T", "T9160C"], "INT": ["I72V", "I113V", "G134N"], "RT-p51": ["K104R", "V106I", "V118I", "E122K", "I135R", "F214L", "E245V", "V261I", "I309L", "D324E", "I329L", "A376T", "T386I", "R390K"], "RT-p66": ["K104R", "V106I", "V118I", "E122K", "I135R", "F214L", "E245V", "V261I", "I309L", "D324E", "I329L", "A376T", "T386I", "R390K", "E449D", "Q507N", "N519S", "S554A"], "gp120": ["D21N", "H44Y", "L58M", "-111N", "E136L", "R138T", "Y145H", "D157N", "S161-", "P210T", "V217G", "E265V", "H280S", "Q287R", "V288T", "K300Q", "E304T", "K315R", "A318V", "-326K", "N328-", "T330S", "P336H", "I343V", "-370N", "-371E", "-372T", "-373M", "-374T", "-375E", "-376D", "-378N", "-379N", "-384D", "I387V", "G401E", "V402A", "N414I", "R472K", "E479D"], "gp41": ["V69I", "K80Q", "T102S", "N113G", "S125G", "D148E", "T208I", "T210S", "P219L", "G221R", "A245I", "L249I", "G281S", "L290V", "G293S", "I298T", "L304Y", "D305N", "T307V", "A310T", "R324G", "I329F"], "nef": ["R21K", "E63D", "Y81F", "F89H", "Y102H", "K104Q", "Q125H", "I133T", "C138T", "V148L", "K151E", "E152Q", "D156A", "N157T", "N161T", "M168I", "S169N", "E174D", "E176P", "R191L", "C206*"], "p1": ["K4R", "I5L"], "p17": ["S9T", "L50F", "I60L", "V82I", "T84V", "Q112K", "Q113K", "T115A", "S124N", "S125N", "K127Q", "Q130H"], "p2": ["Q6N"], "p24": ["P14A", "V27I", "S41T", "M68I", "H87Q", "I91V", "G116A", "S149G", "E180D", "S225G"], "p6": ["L1P", "P5T", "S14N", "F15W", "R16G", "F17M", "P24S", "P25L", "P30Q", "E34D", "L35H", "Y36P", "A39V"], "p7": ["R3K", "V13-"], "pro": ["I13V", "G16E", "L19M", "E35D"], "rev": ["Y28F", "S30P", "A37T", "I55L", "I59V", "C63Y", "S67Y", "T68P", "R99E", "S106P", "V108G", "G111E"], "tat": ["A21D", "K24N", "P68L", "P73S", "S75P", "I76T", "G83D", "P84S"], "vif": ["K37N", "L59I", "K63T", "H83Q", "S95N", "Q105R", "L109I", "K122T", "Q127R", "P131H", "K160R", "I180T", "T188S"], "vpr": ["Y15F", "I84V", "G94S"], "vpu": ["V10A", "I13V", "V21I", "R31K", "N81H", "L82V"]}, "labels": {"aa": "INT: I72V, I113V, G134N; RT-p51: K104R, V106I, V118I, E122K, I135R, F214L, E245V, V261I, I309L, D324E, I329L, A376T, T386I, R390K; RT-p66: K104R, V106I, V118I, E122K, I135R, F214L, E245V, V261I, I309L, D324E, I329L, A376T, T386I, R390K, E449D, Q507N, N519S, S554A; gp120: D21N, H44Y, L58M, -111N, E136L, R138T, Y145H, D157N, S161-, P210T, V217G, E265V, H280S, Q287R, V288T, K300Q, E304T, K315R, A318V, -326K, N328-, T330S, P336H, I343V, -370N, -371E, -372T, -373M, -374T, -375E, -376D, -378N, -379N, -384D, I387V, G401E, V402A, N414I, R472K, E479D; gp41: V69I, K80Q, T102S, N113G, S125G, D148E, T208I, T210S, P219L, G221R, A245I, L249I, G281S, L290V, G293S, I298T, L304Y, D305N, T307V, A310T, R324G, I329F; nef: R21K, E63D, Y81F, F89H, Y102H, K104Q, Q125H, I133T, C138T, V148L, K151E, E152Q, D156A, N157T, N161T, M168I, S169N, E174D, E176P, R191L, C206*; p1: K4R, I5L; p17: S9T, L50F, I60L, V82I, T84V, Q112K, Q113K, T115A, S124N, S125N, K127Q, Q130H; p2: Q6N; p24: P14A, V27I, S41T, M68I, H87Q, I91V, G116A, S149G, E180D, S225G; p6: L1P, P5T, S14N, F15W, R16G, F17M, P24S, P25L, P30Q, E34D, L35H, Y36P, A39V; p7: R3K, V13-; pro: I13V, G16E, L19M, E35D; rev: Y28F, S30P, A37T, I55L, I59V, C63Y, S67Y, T68P, R99E, S106P, V108G, G111E; tat: A21D, K24N, P68L, P73S, S75P, I76T, G83D, P84S; vif: K37N, L59I, K63T, H83Q, S95N, Q105R, L109I, K122T, Q127R, P131H, K160R, I180T, T188S; vpr: Y15F, I84V, G94S; vpu: V10A, I13V, V21I, R31K, N81H, L82V", "clade": "CRF103_01B"}}, "children": [{"name": "MN067223", "node_attrs": {"div": 0.14627, "accession": "MN067223", "clade_membership": {"value": "CRF103_01B"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "HE18S0298"}, "LANL_subtype": {"value": "CRF103_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A645C", "A676G", "C700A", "C872T", "A1017G", "G1019A", "G1301A", "A1359T", "C1535T", "C1615A", "T1676C", "G1727A", "A1738G", "G1760A", "T1895C", "A1932G", "G1968A", "C2296T", "A2612G", "C2626T", "G2725A", "A2755G", "A2864C", "A2992T", "A3071G", "G3154A", "A3193G", "A3295G", "T3566C", "A3685G", "G4151A", "A4427T", "G4764A", "G4767A", "A4816G", "A4860G", "C5006T", "A5026T", "G5128A", "T5147C", "A5186G", "T5197C", "G5437A", "T5439A", "T5467G", "G5468T", "A5576C", "A5581G", "A5622T", "A5737G", "T5885C", "A6065G", "A6167G", "T6171-", "C6174A", "C6175G", "T6178C", "C6181G", "C6189A", "T6193G", "A6197G", "-6202A", "A6265T", "A6311C", "C6318A", "A6335G", "G6336A", "T6347G", "T6348A", "A6349T", "T6351A", "A6352T", "T6356A", "A6359T", "A6367T", "G6368A", "T6369A", "C6370T", "A6375C", "G6376T", "A6378G", "G6379C", "A6390C", "G6391C", "G6401A", "A6417G", "C6428G", "A6430G", "G6431T", "G6435C", "G6442A", "T6447G", "A6448C", "A6451T", "T6457A", "A6461T", "G6463T", "T6467G", "G6479T", "G6481T", "T6485A", "A6488G", "A6490C", "G6498T", "A6507C", "T6522C", "G6530T", "G6533A", "T6534C", "T6541G", "A6543T", "G6550T", "T6551G", "G6558T", "C6559G", "G6561C", "T6562A", "T6564A", "G6569C", "A6574T", "G6575C", "T6598A", "A6622T", "A6638G", "T6641C", "-6697T", "A6716C", "G6726T", "G6773A", "A6780T", "A6786G", "A6797G", "A6818C", "G6821A", "A6834C", "-6960A", "-6961T", "-6962A", "-6963G", "-6964A", "-6965A", "-6966A", "-6967A", "-6968T", "-6969G", "-6970G", "-6971A", "-6972A", "-6973C", "A6985T", "-6990C", "-6993C", "-6994G", "-6995G", "-6996A", "-6997A", "-6998G", "-6999A", "-7000C", "G7055C", "A7148G", "A7149G", "A7151G", "A7152G", "A7154G", "A7160G", "A7161C", "-7162A", "-7164C", "C7174T", "G7182A", "G7285A", "A7373C", "A7402G", "C7582T", "A7688G", "A7703C", "C7706A", "G7744A", "G7769A", "A7782G", "T7930G", "T7939C", "G7956A", "A7957T", "A8069C", "G8070T", "G8130A", "T8218C", "A8258C", "C8277T", "G8388A", "G8407A", "T8440C", "G8517C", "A8525C", "A8576C", "G8605C", "A8662C", "G8664C", "G8730A", "A8772G", "C8789T", "G8793C", "G8795C", "G8798T", "G8802C", "G8875A", "T8915G", "A8933G", "G8945T", "G9153A"], "INT": ["L101I", "V126M"], "RT-p51": ["K173E", "I257L", "I326V"], "RT-p66": ["K173E", "I257L", "I326V"], "gp120": ["Y11H", "N71D", "N105D", "-109D", "N111W", "-112S", "-114Q", "-115I", "-124G", "E125N", "K127T", "L137F", "I153L", "P155Q", "-161D", "E162K", "R164K", "L165D", "I166N", "C168S", "N169Y", "V172N", "K174T", "Q175R", "K179T", "D183N", "H188R", "P192A", "A193S", "G194A", "L198C", "K199N", "N201K", "K203Y", "F205V", "G209C", "C211S", "K212D", "S215I", "Q218P", "I223T", "V226L", "V227T", "Q230L", "L233V", "G235V", "S236T", "L237Q", "E239Q", "E240D", "E241Q", "N248K", "K262E", "S263P", "T288P", "R291I", "G307R", "K309I", "N311S", "R315G", "K322Q", "E323K", "K326T", "N379T", "-380T", "-381E", "-383S", "E401Q", "N432G", "-433G", "T436A", "N437T", "G443E"], "gp41": ["I24L", "N129A", "I134L", "L135I", "A156T", "N160S", "D163S", "R218N", "S256L", "I319L", "A325V"], "nef": ["V16I", "R22K", "V33A", "E59Q", "Q61H", "S88T", "Q107P", "E108Q", "G130R", "K144E", "E151H", "Q152H", "E154Q", "R178K", "S188R", "E201D"], "p17": ["I104L", "K114R", "T122K"], "p24": ["M96V", "T210S"], "p6": ["E19-", "T21G", "L25S", "-26L"], "p7": ["T50N"], "pro": ["K45R", "R57K"], "rev": ["I21L", "F28V", "S31P", "T37S", "Q74P"], "tat": ["D21K", "C31V", "N67T", "I69V", "L74R", "I77T", "D83I"], "vif": ["G60R", "E61K", "K77R", "R92G", "Y147F", "R181K"], "vpr": ["F15L"], "vpu": ["E5D", "K44E"]}, "labels": {"aa": "INT: L101I, V126M; RT-p51: K173E, I257L, I326V; RT-p66: K173E, I257L, I326V; gp120: Y11H, N71D, N105D, -109D, N111W, -112S, -114Q, -115I, -124G, E125N, K127T, L137F, I153L, P155Q, -161D, E162K, R164K, L165D, I166N, C168S, N169Y, V172N, K174T, Q175R, K179T, D183N, H188R, P192A, A193S, G194A, L198C, K199N, N201K, K203Y, F205V, G209C, C211S, K212D, S215I, Q218P, I223T, V226L, V227T, Q230L, L233V, G235V, S236T, L237Q, E239Q, E240D, E241Q, N248K, K262E, S263P, T288P, R291I, G307R, K309I, N311S, R315G, K322Q, E323K, K326T, N379T, -380T, -381E, -383S, E401Q, N432G, -433G, T436A, N437T, G443E; gp41: I24L, N129A, I134L, L135I, A156T, N160S, D163S, R218N, S256L, I319L, A325V; nef: V16I, R22K, V33A, E59Q, Q61H, S88T, Q107P, E108Q, G130R, K144E, E151H, Q152H, E154Q, R178K, S188R, E201D; p17: I104L, K114R, T122K; p24: M96V, T210S; p6: E19-, T21G, L25S, -26L; p7: T50N; pro: K45R, R57K; rev: I21L, F28V, S31P, T37S, Q74P; tat: D21K, C31V, N67T, I69V, L74R, I77T, D83I; vif: G60R, E61K, K77R, R92G, Y147F, R181K; vpr: F15L; vpu: E5D, K44E"}}}, {"name": "CRF103_01B_NODE_0000001", "node_attrs": {"div": 0.13093000000000002, "clade_membership": {"value": "CRF103_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T435C", "C668T", "C1118A", "G1313A", "A1529C", "C1656A", "C2806T", "T3644A", "A4076T", "A5161G", "A5599C", "C5713G", "A6024C", "G6076A", "-6170T", "G6179C", "C6183A", "C6187G", "T6487C", "C6586T", "T6758C", "C6925T", "T7156A", "A7158C", "A7163-", "G7568A", "G7569A", "A7630C", "G7712A", "A7721G", "G8079A", "A8228G", "A8396C", "A8540G", "C8669T", "G8807A", "C8904A", "T8923G", "G8955A", "A9042G", "T9078C"], "RT-p66": ["L517I"], "gp120": ["I126V", "Y302H"], "gp41": ["G89N", "E109D", "E137K", "N140D", "R259H", "I309V"], "nef": ["E18D", "I194R", "D205N"], "p1": ["H9N"], "p6": ["T23S"], "p7": ["E21D"], "vif": ["H192R"], "vpu": ["Q36E"]}, "labels": {"aa": "RT-p66: L517I; gp120: I126V, Y302H; gp41: G89N, E109D, E137K, N140D, R259H, I309V; nef: E18D, I194R, D205N; p1: H9N; p6: T23S; p7: E21D; vif: H192R; vpu: Q36E"}}, "children": [{"name": "MN067222", "node_attrs": {"div": 0.14626000000000003, "accession": "MN067222", "clade_membership": {"value": "CRF103_01B"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "HE18S0290"}, "LANL_subtype": {"value": "CRF103_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T362G", "A492T", "G654C", "A899G", "G905A", "G992T", "G1002A", "G1004A", "A1115C", "C1362T", "A1441G", "A1473G", "A1474G", "C1478T", "A1643G", "A1718G", "T1954G", "G1969A", "A2398G", "C2464G", "G2728A", "A3456G", "C3542T", "G3664A", "A3816G", "A3880G", "A4078G", "C4117T", "T4177C", "A4254G", "G4264A", "G4622A", "G4769A", "A4845G", "G4856A", "A4865C", "G4900A", "A4911T", "G5065A", "T5147A", "G5179C", "A5247G", "G5289A", "T5333C", "G5355A", "G5357T", "A5534G", "G5535A", "C5585G", "A5611T", "G5652T", "T5708G", "C5834A", "A5947G", "A6136G", "C6179T", "T6180C", "T6193A", "C6196A", "A6197T", "A6198G", "T6199G", "A6200T", "-6202T", "T6203G", "G6204A", "G6205C", "T6206C", "C6207A", "T6208A", "A6210T", "C6211A", "C6212G", "A6213G", "T6216A", "A6217T", "G6218A", "G6219T", "A6222C", "G6224A", "C6287T", "A6303G", "A6324G", "A6339G", "G6340T", "T6341G", "T6347A", "T6356G", "A6375G", "G6379T", "G6431A", "C6432T", "G6442T", "T6447C", "A6471G", "G6475T", "A6484T", "A6491G", "A6516G", "A6529C", "T6531C", "G6533C", "C6613T", "-6697G", "A6734G", "T6735A", "A6736C", "C6752A", "T6807C", "A6833C", "T6888C", "C6974A", "A6975C", "T6976A", "A6978G", "G6980A", "G6982T", "A6987C", "T6988C", "-6990T", "C6991G", "-6993C", "-6994A", "-6995G", "-6996A", "-6997G", "-6998G", "-6999G", "-7000T", "G7002A", "C7012A", "C7059T", "G7106A", "T7107C", "A7152T", "T7153G", "A7294G", "C7606T", "G7633A", "G7640A", "G7641A", "C7689A", "A7734G", "C7801A", "T7926C", "A7935G", "C8011A", "T8047C", "A8076G", "A8099G", "G8219A", "G8241A", "C8320A", "A8323C", "T8366C", "A8404G", "C8531A", "A8588G", "A8617G", "T8640C", "C8646T", "A8701T", "A8719G", "C8740T", "T8746A", "T8747C", "C8791A", "G8808A", "A8815G", "A8816C", "T8864C", "A8886G", "G8936A", "A8947T", "G8968A"], "INT": ["K14R", "K160R", "G283S"], "RT-p51": ["D123E"], "RT-p66": ["D123E", "K454R", "H483Y"], "gp120": ["-106A", "-107N", "-109I", "N113-", "H145Y", "K150R", "N157-", "N158-", "N159-", "N160-", "E162-", "Y163-", "R164-", "L165-", "I166-", "N167S", "K174R", "Q175H", "A193I", "L198S", "N206S", "N213D", "H221R", "V226A", "V227L", "I281M", "Q300K", "V318A", "K326Q", "-368T", "-369G", "D376G", "-377N", "N378D", "A402V", "V418T", "-433M", "N435T", "T436N", "N437-"], "gp41": ["G113N", "K144R", "D163S", "N166K", "I208T", "H211R", "H258R", "I266V", "A306T", "G313E", "L340F"], "nef": ["K21R", "D63E", "K92R", "H102Y", "Y120F", "N126S", "T133I", "F135Y", "A156T", "K158S", "M182V", "Y202F"], "p17": ["T53S", "E107Q"], "p2": ["N6S"], "p24": ["Q87H", "V91I", "E128D"], "p7": ["K3G"], "rev": ["S7D", "Q24E", "L55I", "Y67H", "D84G"], "tat": ["K53R", "P70R", "S73P"], "vif": ["I87V", "K93N", "R105Q", "I109L", "R160K"], "vpr": ["F15I", "E25D", "N48S", "R62K", "V84I"], "vpu": ["T2S", "L34R", "P76H"]}, "labels": {"aa": "INT: K14R, K160R, G283S; RT-p51: D123E; RT-p66: D123E, K454R, H483Y; gp120: -106A, -107N, -109I, N113-, H145Y, K150R, N157-, N158-, N159-, N160-, E162-, Y163-, R164-, L165-, I166-, N167S, K174R, Q175H, A193I, L198S, N206S, N213D, H221R, V226A, V227L, I281M, Q300K, V318A, K326Q, -368T, -369G, D376G, -377N, N378D, A402V, V418T, -433M, N435T, T436N, N437-; gp41: G113N, K144R, D163S, N166K, I208T, H211R, H258R, I266V, A306T, G313E, L340F; nef: K21R, D63E, K92R, H102Y, Y120F, N126S, T133I, F135Y, A156T, K158S, M182V, Y202F; p17: T53S, E107Q; p2: N6S; p24: Q87H, V91I, E128D; p7: K3G; rev: S7D, Q24E, L55I, Y67H, D84G; tat: K53R, P70R, S73P; vif: I87V, K93N, R105Q, I109L, R160K; vpr: F15I, E25D, N48S, R62K, V84I; vpu: T2S, L34R, P76H"}}}, {"name": "MH388438", "node_attrs": {"div": 0.14177, "accession": "MH388438", "clade_membership": {"value": "CRF103_01B"}, "country": {"value": "CN"}, "date": {"value": 2015.0}, "Strain_name": {"value": "HE150308"}, "LANL_subtype": {"value": "CRF103_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A461C", "T485C", "G615A", "T713G", "A776G", "T988C", "A1025C", "A1101G", "G1127A", "A1397G", "G1487C", "C1613T", "G1646A", "G1855A", "A2460T", "G2499T", "C2694T", "A2985C", "T3118A", "G3166A", "T3436C", "A3805C", "T3826C", "A4297G", "A4650C", "T4691A", "G4723A", "C4724T", "G4765A", "G4779A", "T5062C", "T5209G", "G5290A", "A5385G", "T5568C", "C5636T", "G5640A", "C5727T", "A5734G", "A5805G", "G5864A", "C6101T", "A6157G", "T6166C", "A6186G", "A6191G", "A6195C", "C6201G", "-6202C", "G6234A", "A6327G", "A6333G", "G6336C", "A6338G", "A6345G", "T6466A", "A6482C", "G6504T", "C6631A", "T6648A", "-6703A", "A6810G", "A6840T", "A6861C", "-6960A", "-6961C", "-6962A", "-6963G", "-6964G", "-6965A", "-6966A", "-6967A", "-6968T", "-6969G", "-6970A", "-6971A", "-6972A", "-6973C", "A6981G", "G6983T", "-6990A", "A6992-", "C7008T", "A7030C", "A7149C", "C7155T", "C7171T", "G7235A", "T7625C", "A7626T", "A7790G", "G7791A", "G7871A", "G7944A", "C8005A", "G8017C", "A8032G", "A8036G", "T8037C", "C8051A", "T8182C", "G8272A", "T8337A", "G8393A", "A8406C", "A8519C", "T8597A", "C8789G", "G8799A", "A8858G", "C8913T", "G8917A", "T9019G", "T9051A", "A9132G", "T9148C"], "INT": ["E10D"], "RT-p51": ["K122I", "R135I", "T200I", "E297A", "M357I"], "RT-p66": ["K122I", "R135I", "T200I", "E297A", "M357I"], "gp120": ["D4N", "N105-", "N108-", "T110-", "-112T", "-114S", "-115W", "-116S", "-117N", "-118Q", "-119I", "-120G", "-121N", "-122I", "-123T", "-124D", "N158G", "N159S", "-161T", "N204K", "T210P", "G217V", "H259Q", "V265E", "K319R", "-328M", "K329S", "S330-", "H336P", "N378G", "-380N", "-383S", "T385I", "N432T", "N435I", "V461I"], "gp41": ["Y108L", "N129T", "V190I", "R214K", "I245A", "L345Q"], "nef": ["E59D", "F85L", "D149E", "V153I", "L191F", "R192H"], "p17": ["E42D", "V94I", "K113N", "S126R"], "p24": ["V86A", "E98D", "I124V"], "p7": ["K7N"], "pro": ["M19I"], "rev": ["I18T", "R53S", "E57Q", "T62A", "Y63C", "P68Q", "S112P"], "tat": ["G79R"], "vif": ["N22H", "S46N", "G60E", "V65I", "I159T"], "vpr": ["S94G"], "vpu": ["A10V", "I43V"]}, "labels": {"aa": "INT: E10D; RT-p51: K122I, R135I, T200I, E297A, M357I; RT-p66: K122I, R135I, T200I, E297A, M357I; gp120: D4N, N105-, N108-, T110-, -112T, -114S, -115W, -116S, -117N, -118Q, -119I, -120G, -121N, -122I, -123T, -124D, N158G, N159S, -161T, N204K, T210P, G217V, H259Q, V265E, K319R, -328M, K329S, S330-, H336P, N378G, -380N, -383S, T385I, N432T, N435I, V461I; gp41: Y108L, N129T, V190I, R214K, I245A, L345Q; nef: E59D, F85L, D149E, V153I, L191F, R192H; p17: E42D, V94I, K113N, S126R; p24: V86A, E98D, I124V; p7: K7N; pro: M19I; rev: I18T, R53S, E57Q, T62A, Y63C, P68Q, S112P; tat: G79R; vif: N22H, S46N, G60E, V65I, I159T; vpr: S94G; vpu: A10V, I43V"}}}]}]}, {"name": "NODE_0000599", "node_attrs": {"div": 0.07724, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A152-", "C153-", "C155-", "A159-", "C160-", "G458A", "G1109A", "C1756A", "T1996C", "G2008A", "A2727G", "C3303T", "A3334G", "C3668T", "C4042T", "A4078C", "G4109A", "T4110C", "T4129C", "A4159C", "T4177G", "A4183G", "G4195C", "C4258T", "C4288T", "A4916T", "G5059A", "T5412G", "C5707T"], "INT": ["V112T", "A124T"], "RT-p51": ["K211R"], "RT-p66": ["K211R"], "nef": ["K151R"], "p6": ["-26Q"], "p7": ["K7R", "G8N"], "vif": ["R158K"]}, "labels": {"aa": "INT: V112T, A124T; RT-p51: K211R; RT-p66: K211R; nef: K151R; p6: -26Q; p7: K7R, G8N; vif: R158K"}}, "children": [{"name": "NODE_0000600", "node_attrs": {"div": 0.08412, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G425A", "T435A", "A562G", "T746C", "G1199A", "T1229C", "A1256G", "C1331T", "A1397G", "T1403C", "G1430A", "-1456C", "-1458A", 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I113V; RT-p51: F346Y, R390K; RT-p66: F346Y, R390K, N519S; gp120: P57L, R391K; gp41: M54L, D230G; nef: H116N; p17: M31L, L34I, K76R, E107A; p2: -10S, -12T; p6: A12E, K31I; p7: K10R, L24I; pro: L63P, M89L; tat: N12K, K71E, S75P"}}, "children": [{"name": "results/subtype_trees/CRF54_01B.nwk", "node_attrs": {"div": 0.12348, "clade_membership": {"value": "CRF54_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T131C", "T135-", "A136-", "G137-", "A138-", "G139-", "A140-", "T141-", "C142-", "C143-", "G148A", "A149T", "C150-", "C151-", "T154-", "T156-", "A157-", "G158-", "A168-", "T214G", "G256A", "T258C", "A261G", "A369C", "G378A", "C379G", "A388G", "C399A", "A440G", "G455A", "T456C", "A462C", "C476T", "T485G", "G495T", "A503C", "C507A", "A516C", "A518G", "T525C", "G530A", "T531C", "A534G", "T536C", "C539T", "A540C", "C558T", "T572C", "A585G", "C586T", "C587T", "G592A", "G593T", "C602T", "T655C", "T662A", "C668T", "A714C", "G743A", "T749C", "G829A", "A839G", "T861G", "T1001A", "A1002G", "A1022G", "A1070G", "C1137T", "T1182C", "A1205G", "G1268A", "G1419A", "-1455C", "-1505C", "A1536G", "T1652C", "T1676C", "G1687A", "A1715G", "-1730T", "C1751A", "T1752C", "-1784A", "T1828A", "A1849G", "G1852A", "C1853G", "T1854A", "T1895C", "A1903C", "A1920G", "A2003C", "A2005C", "C2044T", "A2063C", "A2075C", "G2155A", "A2170T", "A2230G", "C2326T", "A2386C", "A2398G", "A2410T", "A2419T", "T2431G", "T2443C", "A2498G", "A2579T", "G2656A", "A2716G", "G2761A", "T2770C", "A2808G", "A2818C", "G2830A", "G2872A", "A2884G", "G2902A", "C2909G", "A2920G", "T2930C", "A2932G", "T2944C", "A2951G", "C2952T", "C2953T", "C2960T", "A2968C", "G2969A", "A2983T", "G2995A", "A3001G", "G3004A", "A3010G", "G3029A", "A3030C", "A3031C", "A3034T", "A3037G", "G3046A", "A3096T", "T3112C", "A3124G", "G3142A", "A3247G", "A3280G", "T3303C", "T3399A", "G3439A", "T3472C", "G3473A", "G3477A", "T3497A", "T3505A", "G3523A", "A3524G", "C3577T", "G3664A", "A3674C", "G3694A", "A3703G", "A3727G", "G3737A", "C3751T", "C3773T", "G3796A", "G3859A", "A3880G", "T3946C", "G3984A", "A3985C", "C4006T", "T4024C", "A4057G", "A4105G", "C4132A", "C4141A", "C4146A", "A4174G", "G4263A", "G4264A", "T4276C", "G4354A", "A4376G", "A4407G", "A4475C", "A4495G", "A4498C", "C4501T", "G4622A", "G4642A", "T4667C", "G4677A", "A4695G", "A4696G", "G4697A", "T4701G", "G4708A", "T4715C", "A4721T", "C4725A", "A4726T", "G4736A", "G4737A", "A4760G", "A4768G", "G4769T", "A4778G", "G4786C", "G4802A", "G4805T", "A4816G", "G4817A", "C4826T", "T4832C", "T4835G", "G4856A", "C4857A", "A4858G", "G4861A", "A4864G", "A4878G", "T4883C", "G4904A", "A4913G", "C4914T", "C4925T", "C4937A", "C4943T", "G4949A", "A4952T", "A4958T", "A4966G", "A4967T", "A4976T", "G4978C", "G4982T", "A4988T", "C4993A", "T4995G", "C5018T", "A5024G", "T5091C", "T5147C", "A5155G", "A5167G", "T5237C", "T5293A", "T5333C", "G5448A", "G5619A", "A5634T", "T5636C", "G5686C", "C5687T", "T5688C", "G5712A", "T5731C", "A5737G", "G5739T", "C5789-", "A5790-", "G5791-", "A5792C", "T5793A", "A5796T", "T5797G", "T5798A", "G5799C", "G5800T", "C5801T", "C5802G", "A5803G", "A5804C", "A5805C", "T5807A", "C5826T", "C5833G", "G5864A", "T5884G", "T5896C", "T5917G", "A5926C", "A5950G", "C6067A", "T6072C", "A6157G", "C6165A", "C6166T", "T6171C", "-6172G", "A6173G", "T6181C", "A6185G", "C6189A", "C6190G", "A6195C", "-6198C", "-6203A", "-6204T", "-6205A", "-6207G", "-6208A", "-6210A", "-6212A", "-6213T", "-6215A", "-6216C", "-6217A", "-6218G", "-6219A", "-6222A", "G6224-", "G6227-", "-6230A", "G6234A", "T6242A", "A6262G", "A6263C", "G6267A", "A6333G", "A6338G", "A6392G", "G6451A", "T6466C", "G6532A", "C6559T", "C6618A", "C6652T", "G6693A", "G6806T", "G6809A", "C6862T", "C6951T", "-6955G", "-6978A", "-6979A", "-6982A", "-6983A", "-6984A", "-6985T", "-6986G", "-6988A", "-6989A", "-6990C", "-6993T", "-6994G", "-6995G", "-6996A", "-6997A", "-7000G", "-7002G", "-7005A", "G7027A", "G7056A", "A7096T", "A7149-", "A7151-", "A7152-", "T7153-", "A7155-", "T7156C", "A7160G", "-7162G", "-7164C", "G7182C", "A7372C", "C7642T", "A7753G", "A7781T", "A7782C", "A7818G", "A7832G", "A7858G", "C7929T", "T7936C", "T7939C", "A8002G", "C8009A", "G8019A", "A8032G", "G8036A", "C8044G", "G8137T", "T8171G", "A8173G", "G8239T", "G8254A", "C8268T", "T8337A", "A8338G", "A8370C", "G8388A", "G8405A", "T8414C", "C8445A", "A8469G", "G8479C", "A8486G", "T8505C", "G8528A", "A8540G", "C8601T", "T8603G", "A8647G", "C8648G", "G8666C", "T8701A", "G8753A", "T8756C", "G9027A", "A9135G"], "INT": ["G70D", "L101I", "S119R", "T124N", "G163E", "I201V", "K211R", "I234L", "G283S"], "RT-p51": ["I135V", "S162C", "K238R", "T286V", "E291D", "V292I", "E312T", "Q334L", "V435E"], "RT-p66": ["I135V", "S162C", "K238R", "T286V", "E291D", "V292I", "E312T", "Q334L", "V435E", "D460N", "R461K", "S468T", "T477A", "K527Q", "V548I"], "gp120": ["D4N", "D21E", "N71K", "V73A", "N105D", "N113-", "S130T", "R138K", "I180V", "T255N", "A318S", "T366I", "-376G", "-377N", "-378E", "-379T", "-380M", "-381E", "-383S", "N435G", "G443A"], "gp41": ["N160S", "K172R", "I177V", "P209L", "S239N", "A245I", "D247E", "L290V", "A322I", "L345Q"], "nef": ["I10L", "V16I", "Q35K", "I43V", "S46T", "I48M", "C55R", "E98D", "Y102W", "E108D", "D156A"], "p17": ["K12Q", "A15R", "K18R", "A54S", "Q58R", "I61L", "S66P", "T67A", "K69Q", "L75F", "T84V", "W86Y", "N109K", "K127Q"], "p2": ["-11P"], "p24": ["S33N", "S44A", "I91V", "E180D", "V230I"], "p6": ["S3N", "L50*"], "p7": ["I24V"], "pro": ["L19E", "E35D", "K41R", "K69H", "I93L"], "rev": ["S30P", "S31P", "I52V", "C63Y", "R66G", "L78I", "V97L", "V108G", "I109V"], "tat": ["I76T", "I77T"], "vif": ["R19K", "N22K", "V31I", "K37G", "F39V", "R41K", "E45D", "Q47I", "V51I", "E61G", "R67T", "Q73H", "K77R", "H83Q", "Q91R", "R92E", "K93R", "I98V", "Q110Y", "D117E", "K122N", "Q127R", "R130S", "R132S", "E134D", "P136Q", "S137A", "N190S"], "vpr": ["Y15H", "Y45H"], "vpu": ["V10A", "A27L", "K44D", "E63D", "P76A"]}, "labels": {"aa": "INT: G70D, L101I, S119R, T124N, G163E, I201V, K211R, I234L, G283S; RT-p51: I135V, S162C, K238R, T286V, E291D, V292I, E312T, Q334L, V435E; RT-p66: I135V, S162C, K238R, T286V, E291D, V292I, E312T, Q334L, V435E, D460N, R461K, S468T, T477A, K527Q, V548I; gp120: D4N, D21E, N71K, V73A, N105D, N113-, S130T, R138K, I180V, T255N, A318S, T366I, -376G, -377N, -378E, -379T, -380M, -381E, -383S, N435G, G443A; gp41: N160S, K172R, I177V, P209L, S239N, A245I, D247E, L290V, A322I, L345Q; nef: I10L, V16I, Q35K, I43V, S46T, I48M, C55R, E98D, Y102W, E108D, D156A; p17: K12Q, A15R, K18R, A54S, Q58R, I61L, S66P, T67A, K69Q, L75F, T84V, W86Y, N109K, K127Q; p2: -11P; p24: S33N, S44A, I91V, E180D, V230I; p6: S3N, L50*; p7: I24V; pro: L19E, E35D, K41R, K69H, I93L; rev: S30P, S31P, I52V, C63Y, R66G, L78I, V97L, V108G, I109V; tat: I76T, I77T; vif: R19K, N22K, V31I, K37G, F39V, R41K, E45D, Q47I, V51I, E61G, R67T, Q73H, K77R, H83Q, Q91R, R92E, K93R, I98V, Q110Y, D117E, K122N, Q127R, R130S, R132S, E134D, P136Q, S137A, N190S; vpr: Y15H, Y45H; vpu: V10A, A27L, K44D, E63D, P76A", "clade": "CRF54_01B"}}, "children": [{"name": "JX390976", "node_attrs": {"div": 0.14631, "accession": "JX390976", "clade_membership": {"value": "CRF54_01B"}, "country": {"value": "MY"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09MYSB023"}, "LANL_subtype": {"value": "CRF54_01B"}}, "branch_attrs": {"mutations": {"nuc": ["-168T", "G206A", "C207T", "G208A", "-217A", "C218G", "A303T", "G354A", "A374G", "G428A", "T466A", "C471G", "A492T", "A556G", "G608A", "A666G", "C679A", "G683A", "G755A", "A774T", "A776G", "C830T", "G956T", "G1016A", "T1091C", "C1220T", "A1307G", "C1316T", "C1354G", "T1451C", "-1452C", "G1469A", "A1494G", "G1499A", "T1501C", "A1543G", "G1568A", "T1730G", "T1791G", "A1793G", "G1794T", "T1797G", "C1826A", "A1894G", "C1996T", "A2002G", "A2023T", "C2047T", "G2138A", "G2139A", "A2140C", "A2152G", "A2154G", "G2198A", "A2212C", "A2216C", "G2294A", "A2304G", "C2353T", "A2396G", "G2411A", "A2413G", "G2539A", "A2645G", "G2664C", "G2728T", "T2737C", "A2738T", "C2739T", "A2750C", "T2774C", "A2985C", "T3139C", "A3163G", "C3175T", "G3250A", "A3268G", "A3279G", "G3402A", "G3442A", "T3445C", "A3503C", "A3684G", "G3766A", "G3825A", "T4144C", "T4165C", "A4178G", "C4210T", "C4652A", "G4673A", "A4766G", "A4850C", "A4865C", "T4910C", "A4987C", "G5009A", "C5146T", "T5197C", "C5207T", "A5223T", "C5242T", "T5264A", "A5462G", "G5535A", "A5548C", "G5620C", "A5640G", "T5679C", "A5751G", "A5784G", "C5806A", "T5808G", "-5809C", "-5810T", "-5811T", "A5817C", "C5834A", "G5845A", "G5963A", "G5972A", "A6024T", "G6076C", "A6158C", "T6163-", "A6164-", "A6165-", "A6167G", "A6168C", "A6186G", "C6195T", "C6196A", "T6199C", "-6201C", "-6202T", "A6203G", "T6204A", "A6205C", "G6207C", "A6210C", "-6211C", "T6213A", "A6215G", "C6216T", "A6217G", "-6220A", "A6222T", "-6224T", "-6225A", "-6226A", "-6227C", "-6229G", "C6238T", "A6261T", "A6266C", "T6287C", "T6289G", "C6305A", "-6340C", "G6346A", "C6397A", "G6463A", "C6466A", "G6577C", "A6615G", "A6638G", "T6655G", "C6684A", "A6714G", "A6718G", "A6728T", "A6752C", "G6788A", "A6799T", "A6856C", "A6944G", "-6956T", "-6957A", "-6958T", "-6963G", "-6964G", "-6965A", "-6966A", "-6967A", "-6968T", "-6969G", "-6970A", "-6971A", "-6972A", "-6973C", "-6974C", "-6975A", "-6976T", "G6977A", "G6980T", "T6985C", "G6986C", "A6988T", "C6990A", "C6991A", "T6993G", "G7000T", "G7004A", "A7005G", "G7055A", "A7101G", "-7149T", "A7154-", "C7156-", "T7192C", "A7447T", "T7636C", "C7645A", "A7688G", "G7702C", "G7712C", "G7717A", "G7769A", "G7790A", "A7796T", "T7843C", "A7862G", "G7885A", "G7915A", "C8031A", "C8033A", "C8080A", "A8143G", "G8219A", "A8228G", "C8287A", "A8364G", "C8369A", "T8374G", "C8382A", "A8402G", "C8412G", "C8413G", "C8414A", "C8415G", "C8505A", "G8506A", "T8507G", "G8558A", "T8582C", "T8584A", "G8590C", "G8603A", "A8604G", "T8675C", "C8699T", "T8740C", "A8762C", "A8859G", "T8860C", "G8875A", "G8917C", "A8922G", "C8934A", "T8939C", "G8945A", "A8950T", "-8988T"], "INT": ["S17N", "I135V"], "RT-p51": ["G15N", "K20R", "V35I", "M41L", "D67N", "K70R", "K101E", "V106M", "M184V", "G190A", "R211S", "T215F", "K219Q", "F227L", "E297A", "K395R", "G436E"], "RT-p66": ["G15N", "K20R", "V35I", "M41L", "D67N", "K70R", "K101E", "V106M", "M184V", "G190A", "R211S", "T215F", "K219Q", "F227L", "E297A", "K395R", "G436E", "T470P", "K530R"], "gp120": ["V37M", "V40I", "E74D", "N102H", "-106T", "-107T", "N108K", "-109V", "T110I", "E136V", "K138Q", "Y145Q", "L151I", "S161N", "E162N", "N204K", "E241D", "K254R", "K262E", "N267K", "T277K", "Q287R", "T292S", "K300Q", "E312K", "K315N", "N327-", "Q334H", "N364D", "-368Y", "-384S", "G401K", "N416S", "-433E", "N434T", "G435R", "T436N"], "gp41": ["N113D", "N114K", "N129D", "E133D", "E137Q", "A156T", "D163N", "T165S", "I187V", "A243E", "L244I", "R277L", "A306T", "I309V", "I322V"], "nef": ["S8G", "S9R", "V11G", "P14T", "I20M", "P25A", "G29E", "V33A", "R55K", "G83A", "S88G", "I133T", "M173A", "R178K", "S188A", "R192T", "I194V", "L198M", "Y203F"], "p17": ["V7I", "F44Y", "L46V", "T53S", "R58K", "E74G", "S111G", "T115K"], "p2": ["S10P"], "p24": ["E75D", "A208G"], "p6": ["F17L", "L38V", "A39S", "S40A"], "p7": ["M1I", "R10G", "I12T"], "pro": ["L10I"], "rev": ["S7N", "E11D", "K39R", "A54E", "S61R", "T62D", "R99G"], "tat": ["K29R", "T58P"], "vif": ["M29I", "I47M", "E88D", "R93S", "D134A", "P187L"], "vpr": ["P35S", "H40L", "W54R"], "vpu": ["E5Q", "A65V", "K66D", "L67M", "-68G", "V69-", "E70-", "M71-", "G72-", "D73-", "F74-", "D75-", "A76-", "W77-", "V78D", "G79F", "N81D"]}, "labels": {"aa": "INT: S17N, I135V; RT-p51: G15N, K20R, V35I, M41L, D67N, K70R, K101E, V106M, M184V, G190A, R211S, T215F, K219Q, F227L, E297A, K395R, G436E; RT-p66: G15N, K20R, V35I, M41L, D67N, K70R, K101E, V106M, M184V, G190A, R211S, T215F, K219Q, F227L, E297A, K395R, G436E, T470P, K530R; gp120: V37M, V40I, E74D, N102H, -106T, -107T, N108K, -109V, T110I, E136V, K138Q, Y145Q, L151I, S161N, E162N, N204K, E241D, K254R, K262E, N267K, T277K, Q287R, T292S, K300Q, E312K, K315N, N327-, Q334H, N364D, -368Y, -384S, G401K, N416S, -433E, N434T, G435R, T436N; gp41: N113D, N114K, N129D, E133D, E137Q, A156T, D163N, T165S, I187V, A243E, L244I, R277L, A306T, I309V, I322V; nef: S8G, S9R, V11G, P14T, I20M, P25A, G29E, V33A, R55K, G83A, S88G, I133T, M173A, R178K, S188A, R192T, I194V, L198M, Y203F; p17: V7I, F44Y, L46V, T53S, R58K, E74G, S111G, T115K; p2: S10P; p24: E75D, A208G; p6: F17L, L38V, A39S, S40A; p7: M1I, R10G, I12T; pro: L10I; rev: S7N, E11D, K39R, A54E, S61R, T62D, R99G; tat: K29R, T58P; vif: M29I, I47M, E88D, R93S, D134A, P187L; vpr: P35S, H40L, W54R; vpu: E5Q, A65V, K66D, L67M, -68G, V69-, E70-, M71-, G72-, D73-, F74-, D75-, A76-, W77-, V78D, G79F, N81D"}}}, {"name": "CRF54_01B_NODE_0000001", "node_attrs": {"div": 0.12752, "clade_membership": {"value": "CRF54_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C426T", "A508G", "A697G", "A1643G", "A1819G", "G2293A", "A2764G", "A3562G", "T3755G", "T3829C", "A4150G", "T4321C", "C4679T", "G4727T", "A4745G", "G4859A", "A5015G", "T5081C", "T5260C", "G5561A", "A5644G", "A5715G", "C6023T", "A6206G", "A6221G", "A6228-", "G6323A", "T6328C", "T6395A", "-6833A", "-6834A", "-6998G", "-6999G", "A7094C", "A7161G", "A7620G", "G7640A", "T7801A", "A7840G", "G7873A", "G7957A", "G7964A", "G8267A", "T8278C"], "RT-p66": ["S554A"], "gp120": ["L57Y", "N160S", "S181T", "-382G", "N414H"], "gp41": ["K106R", "N166K", "G221R"], "p17": ["D121G"], "p24": ["L15I"], "p6": ["N47S"], "p7": ["R26K"], "rev": ["V16I", "A37T"], "tat": ["S62N", "G83D"], "vpu": ["I13V"]}, "labels": {"aa": "RT-p66: S554A; gp120: L57Y, N160S, S181T, -382G, N414H; gp41: K106R, N166K, G221R; p17: D121G; p24: L15I; p6: N47S; p7: R26K; rev: V16I, A37T; tat: S62N, G83D; vpu: I13V"}}, "children": [{"name": "EU031915", "node_attrs": {"div": 0.14632, "accession": "EU031915", "clade_membership": {"value": "CRF54_01B"}, "country": {"value": "MY"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07MYKLD49"}, "LANL_subtype": {"value": "CRF54_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T213C", "-217A", "A255C", "T362C", "C471A", "C525A", "A527G", "G615A", "A725C", "T1052C", "C1060A", "G1254C", "G1256C", "C1439T", "-1452A", "A1454T", "A1458C", "C1460T", "G1466A", "A1480G", "T1482A", "A1485T", "A1489G", "G1495A", "C1741T", "A1742G", "C1749A", "A1781T", "A1828T", "T2365A", "G2398A", "G2459A", "A2685C", "A2715C", "A2761G", "A2763G", "T3197C", "A3326G", "C3358T", "T3466C", "G3467A", "A3490G", "G3524A", "A3616G", "C3674A", "A3685G", "A3761G", "A3796G", "G3825T", "C4024T", "C4110T", "C4123T", "A4629G", "C4652A", "A4677G", "A4683C", "A4692G", "A4737G", "A4763G", "G4768A", "A4784C", "T4846C", "G4860A", "A4863G", "A5059G", "A5142G", "A5187G", "T5188A", "T5224G", "A5246G", "A5268C", "A5325C", "A5335G", "G5382T", "A5421G", "G5427A", "A5570G", "A5611T", "A5613C", "C5615T", "A5621T", "T5669C", "A5680T", "C5686T", "G5692C", "G5700A", "A5704G", "C5727T", "A5728G", "A5781G", "C5806A", "T5808A", "-5809C", "-5810T", "-5811T", "A5864G", "G5915A", "G5917T", "G5956A", "A5962G", "T5964C", "T6169G", "T6170G", "C6171T", "G6172C", "G6173C", "C6174A", "C6175A", "G6179T", "A6186T", "A6188G", "C6196A", "-6201A", "-6202G", "-6211T", "-6220T", "A6234G", "A6235T", "G6253A", "A6332G", "G6333A", "G6336A", "T6337C", "G6338A", "-6340T", "A6618C", "A6654G", "A6671C", "A6672G", "A6734G", "T6735A", "A6736G", "A6765T", "C6826T", "-6835A", "T6849G", "A6881G", "T6951C", "G6994C", "G6995A", "A6996G", "T7090G", "A7148G", "-7149G", "-7151A", "-7152A", "-7153T", "-7155G", "A7158G", "C7170T", "T7204C", "C7260T", "G7269A", "G7589C", "T7789C", "T7919C", "A7931G", "G7956A", "A8009C", "A8011C", "A8019G", "A8029C", "G8032A", "C8080A", "C8103T", "G8171T", "T8172G", "T8182A", "G8240A", "T8265C", "G8407A", "A8531G", "T8585C", "A8591G", "C8640A", "T8708C", "T8746A", "G8818A", "C8831T", "G8864T", "G8871A", "G8873A", "T8887A", "A8892C", "G8904T", "A8938G", "A8947T", "G8981A", "G8983A", "C9017T", "A9026-"], "INT": ["S17I", "T112I", "Q285R"], "RT-p51": ["E122K", "Q197P", "Q207P", "K223R", "I411V"], "RT-p66": ["E122K", "Q197P", "Q207P", "K223R", "I411V", "V458I", "A477T", "Q527K", "I556V"], "gp120": ["N4D", "E21N", "V37A", "N108-", "T110-", "K127S", "M133I", "N255T", "N267S", "N273R", "D294E", "E304V", "-326K", "N328-", "I332S", "I343V", "I366T", "-375E", "M380I", "E381R", "-384D", "G401E", "S412R", "-433S", "N434S", "T439I", "A469V", "R472K"], "gp41": ["A96P", "F206L", "T210A", "R218K", "N239S", "L242F", "A267V", "V290W", "G313R", "V321A"], "nef": ["R22Q", "Y81F", "L100I", "F135Y", "G159E", "E174D", "E177K", "M182K", "K184Q", "H199R", "Y202F"], "p17": ["L46I", "L64M", "V94I", "Q130H"], "p2": ["S10T", "T12P", "M14I"], "p24": ["T110N", "E175H"], "p6": ["T21M", "P24T", "E34D", "*50L"], "p7": ["N5S", "F6I", "R7W", "N8S", "R10K"], "rev": ["I19V", "Y28C", "I55L", "S61R", "G108V", "S112T"], "tat": ["E2D", "H65R", "D83N"], "vif": ["R15G", "I31V", "K33Q", "K36E", "I51V", "G61D", "I87T", "E92K", "R93G", "K158R", "N186D"], "vpr": ["E13G", "N28R", "H40Q", "N48D", "E55A", "I74L", "Q77R", "A93S"], "vpu": ["T2S", "P3L", "E5V", "V21A", "I25L", "L27F", "E29Q", "I33V", "R41G"]}, "labels": {"aa": "INT: S17I, T112I, Q285R; RT-p51: E122K, Q197P, Q207P, K223R, I411V; RT-p66: E122K, Q197P, Q207P, K223R, I411V, V458I, A477T, Q527K, I556V; gp120: N4D, E21N, V37A, N108-, T110-, K127S, M133I, N255T, N267S, N273R, D294E, E304V, -326K, N328-, I332S, I343V, I366T, -375E, M380I, E381R, -384D, G401E, S412R, -433S, N434S, T439I, A469V, R472K; gp41: A96P, F206L, T210A, R218K, N239S, L242F, A267V, V290W, G313R, V321A; nef: R22Q, Y81F, L100I, F135Y, G159E, E174D, E177K, M182K, K184Q, H199R, Y202F; p17: L46I, L64M, V94I, Q130H; p2: S10T, T12P, M14I; p24: T110N, E175H; p6: T21M, P24T, E34D, *50L; p7: N5S, F6I, R7W, N8S, R10K; rev: I19V, Y28C, I55L, S61R, G108V, S112T; tat: E2D, H65R, D83N; vif: R15G, I31V, K33Q, K36E, I51V, G61D, I87T, E92K, R93G, K158R, N186D; vpr: E13G, N28R, H40Q, N48D, E55A, I74L, Q77R, A93S; vpu: T2S, P3L, E5V, V21A, I25L, L27F, E29Q, I33V, R41G"}}}, {"name": "JX390977", "node_attrs": {"div": 0.14382, "accession": "JX390977", "clade_membership": {"value": "CRF54_01B"}, "country": {"value": "MY"}, "date": {"value": 2008.0}, "Strain_name": {"value": "08MYKL044"}, "LANL_subtype": {"value": "CRF54_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T201C", "A209G", "G214T", "A215-", "A216-", "-304A", "T306-", "A380G", "G388A", "G440A", "A520G", "A606G", "C655A", "A656G", "C714A", "C771G", "C773T", "T788G", "A1115G", "-1452T", "G1536A", "G1562A", "T1610G", "A1709G", "C1782T", "T1792C", "G1920A", "C1987T", "A2215C", "G2498A", "C2671T", "A2875G", "G2914A", "A2925G", "C3013T", "T3034G", "G3364A", "A3395T", "A3435G", "C3508T", "T3541C", "T3566G", "C3712T", "A3816G", "C3985A", "G4174A", "T4510C", "A4664G", "A4687G", "G4723A", "C4820T", "A4869G", "C4899A", "C5147T", "A5148C", "A5150C", "A5159G", "C5168T", "C5248T", "G5380A", "G5412T", "T5415C", "A5462T", "C5482A", "G5556A", "A5581G", "G5599A", "T5602C", "A5622C", "G5627T", "T5666C", "G5717A", "G5747T", "G5775A", "-5789C", "-5790A", "-5791A", "C5792A", "A5793T", "T5796A", "G5797T", "A5798T", "C5799G", "T5800G", "T5801C", "G5802C", "G5803A", "C5804A", "C5805A", "A5807T", "C5926A", "C5951T", "C5958A", "A6001C", "A6020T", "A6066G", "A6095G", "C6148T", "A6158G", "T6160G", "C6174T", "A6182G", "C6183T", "T6184C", "G6185A", "C6187T", "G6190C", "C6193A", "C6198A", "A6200G", "-6201G", "-6202C", "-6211A", "-6220G", "C6263A", "A6267C", "A6276G", "A6302G", "-6340G", "A6350G", "C6370T", "T6424C", "T6445A", "G6475A", "G6530A", "T6556C", "A6605G", "A6689G", "T6745C", "G6774A", "A6798G", "A6799G", "T6806G", "-6835T", "C6858A", "T6862A", "T6904C", "A6932T", "A6935C", "A6936G", "A6978T", "A7056G", "A7148-", "T7150-", "-7155T", "C7182G", "A7261T", "G7288A", "G7291A", "G7456A", "C7463A", "A7572G", "C7597T", "A7701G", "G7702A", "T7708C", "G7720A", "A7734G", "T7916C", "G8006A", "G8008A", "A8036G", "A8222T", "G8234A"], "INT": ["K14R", "D70E"], "RT-p51": ["E40D", "V135I", "K277R", "I434L"], "RT-p66": ["E40D", "V135I", "K277R", "I434L", "N447S", "L491V"], "gp120": ["H33Y", "T35K", "I56L", "K71R", "I81V", "N102E", "D105A", "-106P", "-107L", "-109K", "-111N", "-124G", "L137I", "K138T", "K141R", "K150E", "D157N", "I166V", "V226I", "N251D", "I279V", "D294A", "G307E", "K315R", "S318A", "P335Q", "T360S", "K361R", "-368V", "-384G", "N432I", "A443G"], "gp41": ["L54M", "K90R", "E133G", "K144R", "S205P", "V235I", "I245V", "T307S", "V311I"], "p17": ["R18K", "E62G", "R91G", "A107E", "Q127K"], "p24": ["P14A"], "p6": ["L38S"], "p7": ["V24I", "D48E"], "pro": ["R41K"], "rev": ["R14K", "R53H", "A54K", "T62A", "Y63C", "I78L"], "tat": ["E2K", "K12N", "K29I", "L36I", "I69V"], "vif": ["K22N", "K34R", "S46N", "S95G", "Q105K", "T188P"], "vpr": ["H15S", "N16H", "T19A", "G92E"], "vpu": ["E5D", "S7I", "I20T", "R37K", "R47I", "D62N", "D63E"]}, "labels": {"aa": "INT: K14R, D70E; RT-p51: E40D, V135I, K277R, I434L; RT-p66: E40D, V135I, K277R, I434L, N447S, L491V; gp120: H33Y, T35K, I56L, K71R, I81V, N102E, D105A, -106P, -107L, -109K, -111N, -124G, L137I, K138T, K141R, K150E, D157N, I166V, V226I, N251D, I279V, D294A, G307E, K315R, S318A, P335Q, T360S, K361R, -368V, -384G, N432I, A443G; gp41: L54M, K90R, E133G, K144R, S205P, V235I, I245V, T307S, V311I; p17: R18K, E62G, R91G, A107E, Q127K; p24: P14A; p6: L38S; p7: V24I, D48E; pro: R41K; rev: R14K, R53H, A54K, T62A, Y63C, I78L; tat: E2K, K12N, K29I, L36I, I69V; vif: K22N, K34R, S46N, S95G, Q105K, T188P; vpr: H15S, N16H, T19A, G92E; vpu: E5D, S7I, I20T, R37K, R47I, D62N, D63E"}}}]}]}, {"name": "results/subtype_trees/CRF69_01B.nwk", "node_attrs": {"div": 0.11325, "clade_membership": {"value": "CRF69_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T10A", "C96A", "A101G", "T118G", "G119T", "G121A", "T122-", "-152A", "-153C", "-155C", "-159A", "-160C", "-161T", "-162G", "-163A", "-164G", "-165T", "-166A", "-217T", "A301T", "G452A", "A513T", "G524A", "G579A", "T596C", "G629A", "A674T", "G716A", "C731T", "C771G", "A774T", "T824C", "T827C", "A836G", "T851C", "A860G", "G908A", "A914G", "A938G", "A944G", "A959G", "A1025G", "G1067A", "A1089C", "G1090A", "T1091C", "C1175T", "A1176G", "G1192A", "T1214C", "T1271G", "G1313A", "A1404G", "C1406A", "T1409C", "A1437G", "A1449G", "A1450G", "-1452T", "-1455G", "G1498A", "A1500C", "T1501C", "-1505T", "G1527C", "A1529G", "C1615G", "A1670G", "T1679C", "G1739A", "C1750T", "T1752G", "G1766T", "-1784G", "T1828C", "A1849C", "A1906G", "A1908G", "A2005T", "G2027A", "A2063T", "T2080C", "A2140T", "A2154G", "C2296T", "A2341G", "G2428A", "T2452C", "G2459A", "G2602A", "G2686A", "A2788T", "C2806T", "G2828A", "A2829T", "C2848T", "T2863C", "C2885T", "A2887G", "T2905C", "T2996C", "T3002C", "C3023T", "G3035A", "C3067T", "A3080T", "G3088A", "C3095T", "A3096G", "A3097C", "A3136G", "C3140T", "C3175A", "G3211A", "A3226G", "C3252T", "C3266T", "A3283C", "A3293G", "G3442A", "C3475T", "T3505G", "C3542T", "T3545C", "G3569A", "A3622C", "G3631A", "A3808G", "T3850G", "G3866A", "A3877G", "G3907A", "A3916G", "C3922T", "A3952G", "C3962T", "T3970C", "T3977C", "A3989G", "T3991C", "C3994T", "T4009C", "A4012G", "G4060A", "A4076C", "C4079T", "C4123T", "G4148A", "T4153A", "A4279G", "C4576T", "A4774T", "C4826A", "A4900G", "T4916A", "A4951G", "C4977T", "A5134T", "C5168T", "A5302G", "G5312A", "G5330A", "T5356C", "A5357T", "C5359G", "G5361C", "G5362A", "A5366G", "G5371C", "C5372A", "G5375A", "A5396G", "C5397A", "C5398T", "C5432G", "A5433G", "G5444A", "G5448T", "T5451C", "C5454T", "C5482A", "A5499G", "A5534G", "A5696T", "G5699A", "A5711G", "A5718G", "A5720G", "C5924T", "A6024T", "G6133A", "-6172A", "A6177T", "T6180C", "C6183A", "A6194C", "C6196T", "-6198A", "-6201G", "-6202A", "A6209-", "G6253A", "A6263T", "T6322A", "T6325A", "A6339G", "-6340T", "C6469T", "T6551C", "A6581G", "A6604T", "C6619T", "C6684G", "G6693C", "A6715G", "T6772C", "A6779C", "A6789G", "A6791G", "C6792T", "A6810G", "T6849A", "-6960A", "-6961A", "-6962A", "-6963A", "-6964T", "-6969G", "-6971A", "-6982G", "T7014C", "A7015T", "C7016A", "T7018C", "G7033A", "G7058A", "A7095C", "A7148G", "A7570G", "A7630G", "C7678T", "A7734G", "A7735G", "A8011C", "A8029T", "A8032T", "T8097C", "T8101A", "A8104G", "G8134C", "A8143G", "T8176C", "T8182A", "T8196C", "T8200C", "A8273G", "A8288G", "C8320T", "C8406A", "A8432G", "T8444A", "A8516G", "G8517A", "A8518G", "T8636A", "T8675C", "G8732A", "C8809A", "A8812C", "A8874G", "C9023A", "T9095G", "G9106A", "-9109T", "C9115T", "A9134T"], "INT": ["D25E", "V31I", "I72V", "A125T"], "RT-p51": ["K20R", "E122K", "E245M", "A272P", "V314I", "I329L", "Q334C", "T386I", "E396D", "T400A", "T403I"], "RT-p66": ["K20R", "E122K", "E245M", "A272P", "V314I", "I329L", "Q334C", "T386I", "E396D", "T400A", "T403I", "H483Y", "E492K", "Q509H"], "gp120": ["-106V", "-107N", "K127R", "M133I", "D157K", "N159S", "E162S", "I243V", "T277R", "H280S", "K309Q", "E312G", "T313V", "K319G", "N327-", "W367C", "-368I", "-370N", "I387T", "L388I", "N414T"], "gp41": ["K144R", "L242F", "L265S", "I298T", "I329V"], "nef": ["E59R", "Y120F", "N157T", "R178G"], "p17": ["I60L", "V82I", "Q113H"], "p2": ["S5G", "N9G", "-11A"], "p24": ["P14A", "S120H", "S149G", "R154K", "S225G"], "p6": ["P24L", "P25A", "E29D", "L50S"], "p7": ["R11K", "I12P", "E21Q", "R26K", "T50S"], "pro": ["I36M", "N37S", "K69N", "V77I"], "rev": ["S7D", "I55L", "S61C", "T62S", "C85S", "S86G", "G96Q", "R99G", "S112T"], "tat": ["N7R", "T19R", "S23N", "K24N", "L36I", "K53R"], "vif": ["K63I", "H80Q", "R92G", "Q105R", "K122R", "P131C", "H183L"], "vpr": ["V70I", "I84T", "P85R", "G86Q", "G89A"], "vpu": ["R31K", "K35R", "K38R"]}, "labels": {"aa": "INT: D25E, V31I, I72V, A125T; RT-p51: K20R, E122K, E245M, A272P, V314I, I329L, Q334C, T386I, E396D, T400A, T403I; RT-p66: K20R, E122K, E245M, A272P, V314I, I329L, Q334C, T386I, E396D, T400A, T403I, H483Y, E492K, Q509H; gp120: -106V, -107N, K127R, M133I, D157K, N159S, E162S, I243V, T277R, H280S, K309Q, E312G, T313V, K319G, N327-, W367C, -368I, -370N, I387T, L388I, N414T; gp41: K144R, L242F, L265S, I298T, I329V; nef: E59R, Y120F, N157T, R178G; p17: I60L, V82I, Q113H; p2: S5G, N9G, -11A; p24: P14A, S120H, S149G, R154K, S225G; p6: P24L, P25A, E29D, L50S; p7: R11K, I12P, E21Q, R26K, T50S; pro: I36M, N37S, K69N, V77I; rev: S7D, I55L, S61C, T62S, C85S, S86G, G96Q, R99G, S112T; tat: N7R, T19R, S23N, K24N, L36I, K53R; vif: K63I, H80Q, R92G, Q105R, K122R, P131C, H183L; vpr: V70I, I84T, P85R, G86Q, G89A; vpu: R31K, K35R, K38R", "clade": "CRF69_01B"}}, "children": [{"name": "CRF69_01B_NODE_0000001", "node_attrs": {"div": 0.11592000000000001, "clade_membership": {"value": "CRF69_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A458G", "A605G", "T655C", "A673G", "A715T", "A1982G", "G2411A", "C2776T", "A3685G", "A4109G", "C4110T", "G4267A", "T4667C", "T5062C", "A5581G", "C5658T", "T5659G", "T5660C", "A5784G", "A6195G", "A6333G", "T6340C", "C6708A", "G6732A", "-6959A", "A6960T", "-6968G", "-6970A", "-6974A", "-6978A", "-6979G", "-6984G", "-6985T", "-6986A", "-6988T", "-6989G", "-6990G", "-6993C", "-6994T", "G7132A", "A7151G", "A7152G", "G7182C", "A7689G", "G7790A", "G7977A", "A8023G", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-"], "INT": ["T112V"], "RT-p51": ["V106I"], "RT-p66": ["V106I"], "gp120": ["-112T", "I126-", "N160S", "-282G", "P285Q", "D294I", "-369N", "-375E", "-378N", "-379G", "-380T", "-381T", "T385-", "N437-", "G443A"], "gp41": ["N113D", "N129S", "D163N", "G225E"], "nef": ["I10-", "V11-"], "p17": ["H113R", "K127I"], "pro": ["I62V"], "rev": ["K39R", "I59V"], "tat": ["I69V"], "vif": ["I159T"], "vpu": ["L18A"]}, "labels": {"aa": "INT: T112V; RT-p51: V106I; RT-p66: V106I; gp120: -112T, I126-, N160S, -282G, P285Q, D294I, -369N, -375E, -378N, -379G, -380T, -381T, T385-, N437-, G443A; gp41: N113D, N129S, D163N, G225E; nef: I10-, V11-; p17: H113R, K127I; pro: I62V; rev: K39R, I59V; tat: I69V; vif: I159T; vpu: L18A"}}, "children": [{"name": "AB845349", "node_attrs": {"div": 0.14754, "accession": "AB845349", "clade_membership": {"value": "CRF69_01B"}, "country": {"value": "JP"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10JP_5091N200"}, "LANL_subtype": {"value": "CRF69_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T45C", "A46G", "-122A", "T200C", "T227A", "C426T", "A500G", "A524C", "G562A", "A576C", "C577T", "C583T", "A647G", "G740A", "G837A", "G860A", "C890T", "G938A", "T983C", "T1058C", "C1118A", "C1137A", "A1226G", "C1245T", "T1262C", "T1263A", "A1293G", "G1346A", "A1374C", "T1427A", "A1430G", "T1451A", "A1458G", "G1474A", "A1485G", "C1500T", "A1580G", "G1619A", "T1676C", "-1730T", "A1736G", "T1750C", "T1771A", "T1785C", "A1835G", "A1841G", "G1912A", "A1958C", "T2095C", "A2194T", "G2198A", "T2209C", "T2266C", "A2322G", "C2353T", "A2380G", "T2421C", "G2422A", "T2499C", "A2512G", "A2593G", "C2635A", "A2766G", "G2921A", "C2942A", "T3067A", "C3097T", "G3158A", "G3162A", "G3170A", "G3205A", "C3225T", "A3264G", "A3302G", "G3364A", "C3376T", "A3387C", "T3420C", "A3451G", "T3492C", "G3505A", "A3565G", "A3654G", "T3668C", "G3808C", "G3850A", "T3865A", "A3866G", "G3869A", "A3927G", "A3931G", "A3973T", "A3985G", "G3989A", "C4009T", "T4075C", "C4078T", "A4084G", "G4264A", "A4525G", "A4549G", "G4622A", "A4694T", "G4736A", "T4776A", "A4784T", "G4856A", "A4865C", "G4870A", "C4889A", "T4932A", "T4977C", "C5041T", "T5043C", "A5065G", "A5094G", "G5179T", "T5228C", "T5237C", "C5248T", "A5249C", "C5250A", "T5286C", "A5397G", "G5561A", "A5570G", "A5574G", "A5594G", "A5611C", "C5612A", "G5619A", "A5621C", "T5625A", "G5627T", "T5628A", "T5636C", "A5640G", "G5712A", "G5718A", "G5739A", "C5756A", "C5826T", "T5827C", "T5869G", "A5908G", "G5915A", "T5917A", "T5964C", "G6028A", "A6065G", "T6072C", "G6085A", "T6160G", "C6166T", "T6169A", "A6172G", "C6174T", "C6175G", "T6177A", "G6179T", "C6180G", "A6183C", "T6184C", "A6188T", "A6198G", "T6199G", "-6203G", "-6204G", "-6205A", "-6207G", "A6214-", "A6221-", "A6223-", "G6224-", "G6227-", "A6228-", "A6253G", "T6271C", "A6273G", "T6287C", "G6304A", "C6305A", "A6325T", "A6327G", "T6328C", "G6345T", "C6363A", "T6364C", "T6424C", "T6427C", "A6438T", "G6547A", "C6599A", "A6602T", "A6605G", "C6669T", "A6672G", "A6674T", "A6675G", "A6682C", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "C6693G", "T6696C", "-6697G", "-6698T", "-6699C", "-6700T", "-6701A", "-6702T", "T6719C", "A6725C", "G6726A", "A6734C", "T6735A", "T6745C", "A6748G", "T6758G", "A6759T", "A6765T", "T6769C", "G6774A", "T6787A", "G6791A", "A6805G", "A6819G", "A6849T", "C6854A", "C6858A", "C6860T", "T6863C", "C6875T", "A6932T", "G6954A", "-6955C", "-6956T", "-6957G", "-6958G", "-6972G", "-6973T", "-6975G", "-6976G", "G6981A", "-6983A", "-6995A", "-6996C", "-6997C", "-7002A", "-7005G", "C7008A", "G7027A", "T7039C", "A7058G", "T7081C", "G7089A", "T7090A", "C7095G", "A7097C", "G7106A", "A7124C", "T7156A", "A7157G", "A7163-", "A7190G", "T7192G", "A7195G", "A7339G", "A7533G", "A7534G", "C7642T", "G7666A", "C7691A", "A7721G", "C7732T", "G7769A", "T7852G", "T7877G", "T7888A", "T7913C", "C7926T", "G7961A", "T8029A", "T8037C", "T8047C", "A8050G", "C8112T", "G8216A", "T8221C", "G8239A", "G8241A", "G8264A", "G8273A", "G8276A", "G8288A", "A8364-", "G8365-", "T8366-", "A8367-", "G8368-", "C8369-", "G8376-", "G8377-", "A8378-", "G8388A", "C8412G", "G8421A", "T8505A", "A8531G", "G8558A", "A8576G", "G8590A", "T8700C", "A8718T", "A8719G", "T8746A", "G8807A", "A8827G", "T8855C", "G8873A", "G8904A", "C8905G", "T8939C", "A8954G", "C9093T", "G9136A"], "INT": ["E11D", "I31V", "V32I", "H51R", "V72I", "G283S"], "RT-p51": ["V35I", "D76G", "L109P", "I135T", "E224G", "V276I", "L283I", "D324E", "A355T", "R356K", "G359S", "T377M", "K390R", "I403V", "K431T"], "RT-p66": ["V35I", "D76G", "L109P", "I135T", "E224G", "V276I", "L283I", "D324E", "A355T", "R356K", "G359S", "T377M", "K390R", "I403V", "K431T", "V442A", "V466A", "Q520R"], "gp120": ["N5K", "D21K", "V37A", "N71D", "V73A", "N102K", "N107P", "-111T", "E125-", "I133M", "K140R", "Y145H", "L151I", "S159D", "S161N", "R164M", "T170N", "Y195F", "L249I", "T250S", "N251D", "S272F", "N273S", "N274C", "R276S", "S278R", "I279T", "-283Q", "G286V", "Q287L", "V288Y", "F289Q", "Y290-", "R291T", "T292E", "G293Q", "I295T", "I298M", "Y302V", "E304V", "G307E", "N311K", "V313I", "K322R", "Q334K", "P335Q", "T360S", "C367W", "N370G", "-373S", "-374R", "-376E", "-377S", "-382N", "-383G", "-384N", "S412K", "T414R", "I415L", "V418I", "I424L", "N434-", "N435-", "T436-", "N446E", "I447M"], "gp41": ["K77R", "Q130K", "N140D", "A156T", "S192A", "N195K", "T208I", "E220K", "F242L", "T270I", "D305N", "G313E", "V321I", "A325T", "V329I"], "nef": ["S8-", "S9-", "G12-", "V16I", "A27P", "E28A", "G29T", "C55S", "Y81F", "G83E", "F120L", "N126C", "F135Y", "N162S"], "p17": ["Q63H", "R76K", "T81L", "A83V", "I104M"], "p2": ["T12A"], "p24": ["V36I", "L136M", "S178T", "T188A", "M215L"], "p6": ["L24P", "I31K", "Y36H"], "p7": ["R3K", "R7G", "P12S"], "pro": ["I13V", "I15V", "I54L"], "rev": ["D7G", "V16I", "I19V", "K20R", "R38Q", "C61S", "S67P", "T68A"], "tat": ["S62N", "H65R", "P73S"], "vif": ["K36N", "L64I", "K93N", "S95N", "D101E", "S116T", "C131R", "A152V", "K160R", "T170A"], "vpr": ["E25D", "Y45H", "T49H", "I61T"], "vpu": ["T2Q", "E5A", "S7I", "V10A", "Y30F", "A50E", "F74L"]}, "labels": {"aa": "INT: E11D, I31V, V32I, H51R, V72I, G283S; RT-p51: V35I, D76G, L109P, I135T, E224G, V276I, L283I, D324E, A355T, R356K, G359S, T377M, K390R, I403V, K431T; RT-p66: V35I, D76G, L109P, I135T, E224G, V276I, L283I, D324E, A355T, R356K, G359S, T377M, K390R, I403V, K431T, V442A, V466A, Q520R; gp120: N5K, D21K, V37A, N71D, V73A, N102K, N107P, -111T, E125-, I133M, K140R, Y145H, L151I, S159D, S161N, R164M, T170N, Y195F, L249I, T250S, N251D, S272F, N273S, N274C, R276S, S278R, I279T, -283Q, G286V, Q287L, V288Y, F289Q, Y290-, R291T, T292E, G293Q, I295T, I298M, Y302V, E304V, G307E, N311K, V313I, K322R, Q334K, P335Q, T360S, C367W, N370G, -373S, -374R, -376E, -377S, -382N, -383G, -384N, S412K, T414R, I415L, V418I, I424L, N434-, N435-, T436-, N446E, I447M; gp41: K77R, Q130K, N140D, A156T, S192A, N195K, T208I, E220K, F242L, T270I, D305N, G313E, V321I, A325T, V329I; nef: S8-, S9-, G12-, V16I, A27P, E28A, G29T, C55S, Y81F, G83E, F120L, N126C, F135Y, N162S; p17: Q63H, R76K, T81L, A83V, I104M; p2: T12A; p24: V36I, L136M, S178T, T188A, M215L; p6: L24P, I31K, Y36H; p7: R3K, R7G, P12S; pro: I13V, I15V, I54L; rev: D7G, V16I, I19V, K20R, R38Q, C61S, S67P, T68A; tat: S62N, H65R, P73S; vif: K36N, L64I, K93N, S95N, D101E, S116T, C131R, A152V, K160R, T170A; vpr: E25D, Y45H, T49H, I61T; vpu: T2Q, E5A, S7I, V10A, Y30F, A50E, F74L"}}}, {"name": "AB845348", "node_attrs": {"div": 0.14644000000000001, "accession": "AB845348", "clade_membership": {"value": "CRF69_01B"}, "country": {"value": "JP"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10JP_5091N172"}, "LANL_subtype": {"value": "CRF69_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A255C", "T396C", "C399A", "C535A", "C537A", "A557G", "T635C", "A645G", "G706A", "G712A", "G743A", "C773T", "T1001C", "C1137T", "G1173A", "T1174C", "G1176A", "G1271A", "T1427G", "G1437A", "G1487A", "A1494G", "G1499A", "G1508A", "G1615C", "C1692T", "A1715G", "T1728-", "T1729-", "G1731-", "G1732-", "G1733-", "G1734-", "A1735-", "A1736-", "G1737A", "G1752C", "A1804G", "C1849A", "A1920G", "A2012G", "T2101C", "T2140A", "A2141C", "G2155A", "A2289G", "A2305G", "T2323C", "T2393A", "A2404C", "A2439T", "C2464A", "C2488T", "T2494C", "G2539C", "A2627T", "A2645G", "C2671T", "G2722A", "G2727A", "A2767C", "T2829A", "C2960T", "G3004A", "G3019A", "A3026C", "G3226A", "G3250A", "C3271T", "G3293A", "C3394T", "T3433C", "G3439A", "T3542A", "A3683C", "G3935A", "A3981G", "A3982G", "T4216C", "A4243T", "G4354A", "T4405C", "G4532C", "G4631A", "C4725A", "A4726G", "A4766G", "G4767A", "T4774C", "A4819G", "A4865G", "G4900A", "A4994C", "T5003C", "A5012G", "A5049G", "T5078G", "A5093G", "G5120C", "G5141C", "C5215A", "A5223T", "G5236A", "A5247G", "C5425A", "A5426G", "G5427A", "T5436G", "G5535A", "C5538A", "G5566A", "A5567G", "G5599C", "T5602-", "A5603-", "T5604-", "G5605-", "T5606-", "A5607-", "G5692C", "T5695C", "C5713G", "G5730A", "A5734G", "A5781G", "T5808G", "C5826G", "G5864C", "C5866A", "T5917G", "A5955C", "G5972A", "A6022G", "C6026A", "A6037G", "G6076C", "G6085T", "T6101C", "C6148T", "T6151C", "A6167G", "T6169G", "T6170G", "C6174A", "C6175T", "T6178C", "T6181C", "A6185T", "A6186C", "C6187A", "C6190T", "C6193-", "C6194A", "A6200C", "G6201T", "A6202C", "-6203C", "-6204T", "-6205C", "-6207C", "-6208A", "-6209A", "-6210T", "-6211T", "-6212G", "-6213A", "-6215A", "-6216A", "-6217T", "-6218G", "-6219G", "-6220G", "-6222C", "-6225A", "-6226T", "-6229A", "-6230C", "T6231A", "A6248T", "C6256T", "G6280T", "G6284C", "A6288C", "A6322G", "G6323A", "A6330G", "T6331C", "C6397T", "G6451A", "T6460G", "G6463A", "C6511T", "G6572A", "T6668A", "C6669A", "C6670T", "A6671G", "A6672T", "-6697A", "-6698G", "-6699G", "-6700A", "-6701C", "-6702C", "A6709G", "G6710A", "A6712G", "C6713T", "A6714T", "G6715C", "G6716A", "A6718C", "T6720A", "C6721T", "T6722A", "A6723G", "T6724A", "A6725T", "G6726C", "A6728G", "C6729G", "A6733C", "G6740A", "G6741A", "G6788A", "G6789A", "A6798C", "G6806C", "C6807A", "A6814G", "-6833A", "-6834C", "-6835T", "C6850A", "A6871G", "T6874C", "T6876C", "T6898C", "G6910A", "C6938T", "G6948A", "-6958T", "A6962G", "A6963G", "T6964A", "-6965A", "-6966A", "-6967T", "G6969A", "-6972C", "-6973C", "-6975A", "-6976A", "-6983T", "A7001-", "T7003-", "G7004-", "C7006-", "A7007-", "C7008-", "T7009-", "T7011C", "C7014T", "T7059C", "T7147A", "A7154G", "A7155G", "-7162T", "-7164C", "C7165T", "C7170T", "C7238G", "A7273G", "A7322T", "A7542G", "T7562C", "G7570A", "T7622A", "G7633T", "G7666C", "A7701C", "G7702A", "G7734A", "T7762C", "G7773A", "A7796T", "G7831A", "A7861T", "G7868A", "T7930C", "A7931C", "C7932T", "T7939G", "C7960A", "C7984A", "G8019A", "C8092A", "A8093G", "T8115C", "T8171G", "A8173G", "A8188G", "C8200T", "C8213T", "G8274C", "C8287A", "C8296T", "G8317A", "G8368A", "C8369G", "C8382G", "T8384C", "A8402G", "C8445A", "A8455C", "T8477C", "A8517G", "G8518A", "A8519G", 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"R144K", "S157N", "T165S", "M176I", "A189T", "T210L", "H212Q", "S239N", "A245V", "F263L", "I264V", "V271A", "R277L", "L290V", "L304F", "R324A"], "nef": ["S9K", "P14A", "I20M", "Q35K", "D38A", "R59E", "G83S"], "p17": ["T67N", "L68I", "I104V", "S124N", "S126N"], "p2": ["G5S"], "p24": ["V148T", "G149S"], "p6": ["F17K", "G18-", "E19-", "E20-", "A25P", "K42R"], "p7": ["R10G", "S50T"], "pro": ["K41R", "I72V"], "rev": ["T8N", "I18V", "Y28P", "S31A", "H82S", "V108G", "I109V", "T114A"], "tat": ["Q17R", "H54Q", "D64S", "L74P", "P75S", "I77S", "P84Q"], "vif": ["Q47R", "E61K", "I63T", "D78G", "R105Q", "T155A", "Q178H", "E185D"], "vpr": ["E6Q", "E13Q", "H40L", "N48S"], "vpu": ["E29Q", "Y30L", "Q36E", "I43V", "D73E"]}, "labels": {"aa": "INT: V54I, E69G, K156N, D253H, D286N; RT-p51: M16L, K65R, L100I, K103N, Y115F, D123E, I178L, M184V, R211K, E224D, M245K, K311Q, A400T; RT-p66: M16L, K65R, L100I, K103N, Y115F, D123E, I178L, M184V, R211K, E224D, M245K, K311Q, A400T, Y483N, K530Q; gp120: D4Q, D21E, E34A, V40I, I56M, L58M, E74D, Q77H, N105E, N108I, -109A, T110N, -111S, -118P, -119T, -120I, -122E, -123N, -124G, -126Q, N132Y, Q142H, V144L, Y145S, I156M, D202E, E240K, S272N, N273V, S280P, -283P, G286R, Q287F, V288I, F289Y, Y290R, R291S, T292G, G293D, G296K, G312K, K315T, A318H, -326T, -327N, N328-, I332K, L341P, S365N, N370E, -371T, -372K, -376G, -377C, -382I, -383I, I386-, T387-, I388-, V402T, N432D, -433S, T439I, Q462E; gp41: M7L, K80R, C87R, S107T, E110D, E121D, E133A, R144K, S157N, T165S, M176I, A189T, T210L, H212Q, S239N, A245V, F263L, I264V, V271A, R277L, L290V, L304F, R324A; nef: S9K, P14A, I20M, Q35K, D38A, R59E, G83S; p17: T67N, L68I, I104V, S124N, S126N; p2: G5S; p24: V148T, G149S; p6: F17K, G18-, E19-, E20-, A25P, K42R; p7: R10G, S50T; pro: K41R, I72V; rev: T8N, I18V, Y28P, S31A, H82S, V108G, I109V, T114A; tat: Q17R, H54Q, D64S, L74P, P75S, I77S, P84Q; vif: Q47R, E61K, I63T, D78G, R105Q, T155A, Q178H, E185D; vpr: E6Q, E13Q, H40L, N48S; vpu: E29Q, Y30L, Q36E, I43V, D73E"}}}]}, {"name": "CRF69_01B_NODE_0000002", "node_attrs": {"div": 0.11526, "clade_membership": {"value": "CRF69_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T3497C", "C4754T", "-6222A", "-6225A", "-6226T", "-6229A", "-6230G", "C6692A", "G6806A", "-6955C", "-6999G", "-7000T", "-7002A", "-7005G", "G7964A"], "RT-p66": ["S468P"], "gp120": ["-123K", "-124D", "N158D", "A318T", "I332N"], "gp41": ["G221R", "R324G"], "p17": ["A107V"]}, "labels": {"aa": "RT-p66: S468P; gp120: -123K, -124D, N158D, A318T, I332N; gp41: G221R, R324G; p17: A107V"}}, "children": [{"name": "AB845344", "node_attrs": {"div": 0.12062, "accession": "AB845344", "clade_membership": {"value": "CRF69_01B"}, "country": {"value": "JP"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03JP_5091K231"}, "LANL_subtype": {"value": "CRF69_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A96G", "-122G", "G240A", "A398G", "C426A", "G709A", "G771C", "C1439A", "A1488G", "G1615A", "-1730T", "A1832G", "A2075C", "T2499C", "A3772G", 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"-120E", "-121N", "-122I", "I126V", "K140R", "K157E", "N332A", "K361Q", "I368-", "V402I"], "gp41": ["K106R", "Y108F", "E121D", "F174V", "M176I", "T208I", "R218K"], "nef": ["R22K", "A27T", "Y81F", "K105R", "I133T", "S188A", "R192K"], "p17": ["L31M", "S125N"], "p24": ["A14P"], "p7": ["N8D", "S50N"], "pro": ["T12A", "I93L"], "rev": ["A37T"], "tat": ["P73S", "G83N"], "vpu": ["T2S", "I43V", "R47G", "D62E"]}, "labels": {"aa": "INT: S39N; RT-p51: I135T; RT-p66: I135T; gp120: L57Y, N71S, V106L, -109G, -112P, -118R, -119T, -120E, -121N, -122I, I126V, K140R, K157E, N332A, K361Q, I368-, V402I; gp41: K106R, Y108F, E121D, F174V, M176I, T208I, R218K; nef: R22K, A27T, Y81F, K105R, I133T, S188A, R192K; p17: L31M, S125N; p24: A14P; p7: N8D, S50N; pro: T12A, I93L; rev: A37T; tat: P73S, G83N; vpu: T2S, I43V, R47G, D62E"}}}, {"name": "CRF69_01B_NODE_0000003", "node_attrs": {"div": 0.11853, "clade_membership": {"value": "CRF69_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C1137A", "C1229T", "C1230A", "A1313G", "A1739G", "A3569G", "T4258C", "T4774G", "C5052A", "G5720A", "T5964C", "T6072C", "A6158C", "T6170G", "C6194G", "T6196C", "T6285C", "G6764C", "-6956A", "-6957T", "-6958A", "-6959A", "G6977-", "-6994T", "-6997A", "-6998G", "C8134G", "G8143A", "T8205C", "A8222G", "G8349A", "G8350A", "G8388A", "A8531G", "T8584A", "A8851T", "G8888A"], "RT-p66": ["K492E"], "gp120": ["V37A", "V73A", "R127K", "V144A", "E304Q", "-433N"], "gp41": ["A245V", "I301T", "T307A"], "nef": ["G3N", "V16I", "Q170L"], "p24": ["L136M"], "rev": ["Q96G"], "vif": ["I63R", "P156T"], "vpu": ["R38K"]}, "labels": {"aa": "RT-p66: K492E; gp120: V37A, V73A, R127K, V144A, E304Q, -433N; gp41: A245V, I301T, T307A; nef: G3N, V16I, Q170L; p24: L136M; rev: Q96G; vif: I63R, P156T; vpu: R38K"}}, "children": [{"name": "LC027100", "node_attrs": {"div": 0.14753, "accession": "LC027100", "clade_membership": {"value": "CRF69_01B"}, "country": {"value": "JP"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05JPMYC113SP420"}, 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"G319E", "-326K", "-327N", "N328-", "N332E", "P335Q", "P336H", "L341P", "T360S", "-369N", "-376G", "-377T", "-378N", "-384D", "I386L", "K391R", "I395F", "S412E", "V418I", "N434T", "T436G", "N437T", "G443E", "S453N"], "gp41": ["K80R", "F81L", "E109K", "N113D", "N129Y", "E133D", "D143E", "R144K", "N166S", "V190M", "R221K", "G225E", "F242L", "A267V", "A268T", "L290S", "L304F", "A307V", "I309V"], "nef": ["I48M", "G83A", "K105R", "Q107K", "I133T", "D156E", "S169N", "M182R", "K184E", "R192K"], "p17": ["L64I", "S66P", "T67A", "L68I", "I104M", "E106K", "V107E", "Q112-", "H113-", "K114-", "T115-", "D121G", "S124N"], "p2": ["T12A"], "p24": ["S41T", "V59I", "E75D", "K154R"], "p6": ["T8S", "F15L", "F17E", "G18-", "E19-", "A25T", "K42R", "Q52K"], "p7": ["Q21E"], "pro": ["T12E", "M36I", "S37N", "K41R", "N69K"], "rev": ["D7S", "E10D", "A15T", "I18A", "A37T", "L55I", "C61S", "G86D", "G99R"], "tat": ["R19K", "I36L", "R53K", "G57R", "T58G", "P59T", "S61N", "D64G", "N67D", "P81N", "G83D", "E86K"], "vif": ["V128I", "N140T", "I159T", "N190H"], "vpr": ["E17A", "T19A", "E55Q"], "vpu": ["S7W", "V10A", "V14I", "A27L", "K31R", "R35K", "K44D", "K66R", "M71V"]}, "labels": {"aa": "INT: D6E, A23V, I234L; RT-p51: E138A, M245V, I257V; RT-p66: E138A, M245V, I257V, V466A; gp120: D21K, H33Q, T35A, V40I, L57P, E59Q, N71D, Q77H, V80I, V99I, T100S, N102K, T110-, N113-, T134A, K143Q, K157R, S159D, S161N, R164M, I197L, E240G, V243I, E247K, L249I, E265A, S272F, N273K, N274T, T275I, S278R, I279T, S280A, P285Q, Y290S, D294K, K300Q, G307R, G319E, -326K, -327N, N328-, N332E, P335Q, P336H, L341P, T360S, -369N, -376G, -377T, -378N, -384D, I386L, K391R, I395F, S412E, V418I, N434T, T436G, N437T, G443E, S453N; gp41: K80R, F81L, E109K, N113D, N129Y, E133D, D143E, R144K, N166S, V190M, R221K, G225E, F242L, A267V, A268T, L290S, L304F, A307V, I309V; nef: I48M, G83A, K105R, Q107K, I133T, D156E, S169N, M182R, K184E, R192K; p17: L64I, S66P, T67A, L68I, I104M, E106K, V107E, Q112-, H113-, K114-, T115-, D121G, S124N; p2: T12A; p24: S41T, V59I, E75D, K154R; p6: T8S, F15L, F17E, G18-, E19-, A25T, K42R, Q52K; p7: Q21E; pro: T12E, M36I, S37N, K41R, N69K; rev: D7S, E10D, A15T, I18A, A37T, L55I, C61S, G86D, G99R; tat: R19K, I36L, R53K, G57R, T58G, P59T, S61N, D64G, N67D, P81N, G83D, E86K; vif: V128I, N140T, I159T, N190H; vpr: E17A, T19A, E55Q; vpu: S7W, V10A, V14I, A27L, K31R, R35K, K44D, K66R, M71V"}}}, {"name": "AB845347", "node_attrs": {"div": 0.13824, "accession": "AB845347", "clade_membership": {"value": "CRF69_01B"}, "country": {"value": "JP"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05JP_5091K448"}, "LANL_subtype": {"value": "CRF69_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T7G", "T24C", "G52T", "G118T", "T119A", "T120A", "A121G", "C467T", "C596T", "A604G", "T662G", "A663G", "C679A", "C824T", "G836A", "C1245T", "G1271A", "G1311T", "C1439T", "A1485G", "C1721T", "-1730T", "A1738T", "A1743G", "A1745G", "A1746G", "T1750C", "G1752T", "G1760A", "T1766G", "C1853T", "A1867G", "G2155A", "G2318T", 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K14R, R20K, E25D, S39N, T112I, T206S; RT-p51: V75L, I178L, I202T, Q207E, I244V, C334Y; RT-p66: V75L, I178L, I202T, Q207E, I244V, C334Y, R463K; gp120: R18K, E34D, N71K, N102H, N107S, -109S, -111N, -112V, -114Y, -115T, E125S, I133V, R138T, I153L, P155Q, I156M, K157G, I180V, I197M, V227I, K262Q, R277T, S278G, S280T, Q287R, K322E, S365N, -369R, T385-, V402I, T414K, N432A, N435T, T436N, N446D, I447M, Q462E; gp41: Q52H, K106R, Y108F, Q130L, I134V, E151A, N160T, T165S, F174A, T270I, G281A, A306T, V311I; nef: I20M, V33A, E98D, N116H, T157N, E176D, M182I, K184R, S188A, L198K, Y202F; p17: Q90R, N109K, K110E, T115K; p24: A194S; p6: E20V, T22A, T23A, L24P, A25S, D29E; p7: R7G; rev: T8P, I21L, S31P, I52V, S62T, G99S, T112S, K115E; tat: H54P, N67T, I77T; vif: F39S, H48N, G60E, E61G, D113E, C131Y, T155K, E185D; vpr: E13Q, H40L, N48T, T49N; vpu: E29Q, Y30I, R47G, D73N"}}}]}]}]}]}, {"name": "results/subtype_trees/other.nwk", "node_attrs": {"div": 0.08114, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G1005C", "G6179A", "T6180A", "A7534G", "G7977A", "C8287T"], "gp120": ["L137I"], "gp41": ["G225E"], "p24": ["L15I", "A92P"], "vif": ["Q110H"]}, "labels": {"aa": "gp120: L137I; gp41: G225E; p24: L15I, A92P; vif: Q110H", "clade": "other"}}, "children": [{"name": "other_NODE_0000001", "node_attrs": {"div": 0.09506, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A171-", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "C426A", "A697G", "G743A", "C747G", "T748C", "T749A", "G752A", "C773T", "A774G", "G818A", "C823G", "G829A", "T851C", "A866G", "C890T", "C892T", "C893G", "C902T", "C904T", "A920G", "A977G", "G980A", "T983C", "G989A", "A1022G", "G1067A", "T1091C", "A1115C", "A1127G", "C1175T", "T1214C", "C1230A", "A1247C", "C1253G", "T1263A", "T1271G", "T1299C", "G1301A", "C1316T", "A1329T", "G1346A", "C1350A", "C1354G", "C1362T", "T1385C", "A1418G", "A1446C", "C1447A", "A1449C", "T1511C", "G1532A", "A1536C", 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"G1733A", "A1735G", "C1741T", "A1745C", "C1749T", "T1754A", "A1756C", "G1763A", "C1768A", "T1790C", "A1835G", "A1963G", "A1969G", "C1986T", "C1996T", "A2164G", "G2198A", "T2299C", "T2302C", "A2311G", "G2422A", "G2462A", "G2470A", "G2509A", "T2632G", "A2665G", "G2686A", "A2692G", "C2694T", "A2713G", "G2727A", "T2737A", "T2803A", "A2808G", "T2873C", "T2996C", "T3002C", "T3022C", "C3067G", "A3080T", "G3127A", "T3133C", "G3211A", "G3221A", "C3252T", "G3264A", "C3266T", "T3380C", "T3412C", "T3433C", "G3442C", "T3505A", "C3550A", "A3607G", "T3613C", "A3616T", "C3691T", "C3692T", "C3712T", "A3814G", "C3843T", "A3868G", "A3874C", "C3908A", "A3931G", "A3961G", "T3976C", "A3989G", "C4006G", "T4039C", "A4051G", "A4057G", "G4060A", "C4079T", "A4084G", "A4105G", "A4108G", "C4146G", "A4174G", "A4243T", "T4276G", "T4579C", "A4650C", "A4693G", "A4694G", "T4706C", "G4708A", "G4769A", "A4774T", "G4861A", "A4865C", "T4916C", "T4991C", "A5058C", "A5065G", "G5087A", "T5102C", "G5128A", "T5292C", "T5314C", "A5355T", "A5433C", "T5467G", "G5468T", "G5545A", "A5548T", "A5555G", "G5556C", "T5602C", "T5616C", "C5687G", "A5696T", "G5730A", "A5784G", "C5802T", "C5834A", "T5850C", "A6013G", "A6024C", "C6026T", "A6030T", "A6066G", "T6072C", "G6079A", "G6088A", "T6139G", "C6145T", "A6164T", "C6174A", "C6175T", "A6176G", "T6178C", "T6184C", "A6188G", "T6193C", "-6202C", "-6203A", "A6221-", "C6238T", "T6242A", "T6250C", "A6262G", "T6287C", "C6318A", "T6322G", "T6325A", "T6328G", "A6338G", "-6340A", "A6425G", "A6448T", "T6466G", "C6469T", "G6526A", "A6595G", "A6689G", "C6692A", "T6694A", "A6712C", "A6718G", "A6779G", "T6793C", "G6806A", "A6810C", "T6952-", "T6953-", "G6954-", "-6987A", "-6988A", "-6989A", "-6991C", "-6994G", "-6995G", "-6996A", "-7002A", "-7005G", "A7040G", "T7059C", "G7089A", "T7090G", "A7096C", "T7114C", "G7132A", "A7154G", "T7156A", "A7158C", "C7165-", "T7180G", "G7198A", "C7201T", "C7238G", "G7291C", "G7441A", "G7589A", "C7590A", "T7656C", "C7691A", "A7696C", "A7703C", "A7714G", "A7756G", "T7762C", "A7765G", "T7801C", "T7852A", "A7931T", "A7962G", "A8029G", "G8036A", "G8105A", "A8191G", "G8234A", "T8265C", "G8317A", "A8323C", "G8404A", "G8407A", "C8415G", "G8421A", "T8505A", "G8506A", "A8518G", "G8528A", "C8552T", "T8675C", "C8684T", "C8688A", "A8693T", "C8789T", "A8798G", "A8819G", "G8942A", "G8945T", "C8951T", "A8969G", "G8982A", "C9023A", "G9049A", "T9060A", "G9138A", "A9140C"], "INT": ["A23V", "L45I", "I72V", "L101I", "T124S", "K156N", "D167E"], "RT-p51": ["D123N", "T200I", "R211K", "F214L", "K238R", "A272P", "D324E", "I329L", "A376T", "T386I", "R390K", "T403I"], "RT-p66": ["D123N", "T200I", "R211K", "F214L", "K238R", "A272P", "D324E", "I329L", "A376T", "T386I", "R390K", "T403I", "E449D", "Q507H", "S554A"], "gp120": ["E59V", "N71S", "V73A", "N108-", "T110-", "I126V", "K127R", "S130T", "Y145H", "P155Q", "I156M", "D157E", "N158K", "T191A", "L198F", "N204K", "I279V", "H280R", "R291G", "K309E", "A318T", "K319A", "W367-", "-381E", "-382S", "I396V", "V402A", "S412E", "N435A", "Q462E", "E479D"], "gp41": ["A96N", "I118T", "Q130K", "I134L", "T210F", "E220G", "A245I", "A268T", "V311I", "V321A", "L340F"], "nef": ["R21K", "R22Q", "P25A", "A27T", "C55N", "E98D", "H116N", "E201D"], "p17": ["I61L", "V94I", "T122A"], "p24": ["E79D", "L83T", "H87Q", "M96I", "G116A", "S120N"], "p6": ["S14D", "F15W", "F17M", "E19G", "T21I", "T23S", "Q26-", "P30Q"], "p7": ["R3K", "Q9P"], "pro": ["I13V"], "rev": ["S7N", "E11D", "R14A", "Y28F", "K39R", "S61A", "C63F", "S86N", "K115E"], "tat": ["N12K", "C31V", "G57R", "T58S", "Q60R", "K85E"], "vif": ["N22H", "K36R", "R41K", "K63I", "R92K", "P131R", "K158Q", "K160R", "R181K"], "vpr": ["I63T", "I84L"], "vpu": ["A27G", "Y30F", "P76H"]}, "labels": {"aa": "INT: A23V, L45I, I72V, L101I, T124S, K156N, D167E; RT-p51: D123N, T200I, R211K, F214L, K238R, A272P, D324E, I329L, A376T, T386I, R390K, T403I; RT-p66: D123N, T200I, R211K, F214L, K238R, A272P, D324E, I329L, A376T, T386I, R390K, T403I, E449D, Q507H, S554A; gp120: E59V, N71S, V73A, N108-, T110-, I126V, K127R, S130T, Y145H, P155Q, I156M, D157E, N158K, T191A, L198F, N204K, I279V, H280R, R291G, K309E, A318T, K319A, W367-, -381E, -382S, I396V, V402A, S412E, N435A, Q462E, E479D; gp41: A96N, I118T, Q130K, I134L, T210F, E220G, A245I, A268T, V311I, V321A, L340F; nef: R21K, R22Q, P25A, A27T, C55N, E98D, H116N, E201D; p17: I61L, V94I, T122A; p24: E79D, L83T, H87Q, M96I, G116A, S120N; p6: S14D, F15W, F17M, E19G, T21I, T23S, Q26-, P30Q; p7: R3K, Q9P; pro: I13V; rev: S7N, E11D, R14A, Y28F, K39R, S61A, C63F, S86N, K115E; tat: N12K, C31V, G57R, T58S, Q60R, K85E; vif: N22H, K36R, R41K, K63I, R92K, P131R, K158Q, K160R, R181K; vpr: I63T, I84L; vpu: A27G, Y30F, P76H"}}, "children": [{"name": "KC183782", "node_attrs": {"div": 0.14190000000000003, "accession": "KC183782", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2011.0}, "Strain_name": {"value": "ANHUI_WH73"}, "LANL_subtype": {"value": "CRF68_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G256A", "A303T", "G495T", "T575C", "A659G", "T662A", "A664G", "G686A", "G956A", "A989G", "C1060A", "C1118A", "C1211A", "A1217G", "C1299T", "G1388A", "C1442T", "T1451G", "A1452G", "A1456G", "A1461G", "T1547C", "A1771G", "A1777G", "-1783A", "-1784G", "T1787-", "A1841G", "C2149T", "A2215G", "T2236C", "A2242G", "C2263T", "C2326T", "A2341G", "T2356C", "A2362G", "T2365G", "A2386C", "T2443C", "G2447A", "A2512G", "A2518G", "C2533T", "A2592G", "C2644T", "T2723C", "T2917C", "C3038T", "A3039G", "A3154G", "A3490G", "T3497C", "C3613A", "A3630G", "A3755G", "C4159T", "G4264A", "G4268A", "G4276A", "A4279G", "G4294A", "A4369G", "A4775G", "A4782G", "C4826A", "A4847G", "T4985C", "G5236A", "A5247G", "C5248T", "C5433T", "T5468C", "C5491T", "A5494C", "C5508A", "A5567G", "T5568C", "C5569T", "A5581C", "G5599C", "T5688C", "G5700A", "A5706T", "A5721G", "C5756A", "C5826T", "T5857A", "C5862T", "G5882A", "T5917A", "A5946G", "A6158C", "T6170G", "T6171C", "-6172T", "T6175A", "G6176T", "A6177T", "C6178G", "A6182G", "C6183T", "A6186C", "T6187A", "-6198A", "A6201T", "A6203G", "-6204A", "-6205T", "G6207A", "A6208C", "-6210T", "-6211A", "T6213C", "A6223-", "-6225A", "-6226T", "-6229A", "-6230G", "A6275C", "A6326G", "A6327G", "T6347C", "C6397A", "A6484G", "A6725G", "C6824T", "A6840C", "T6888C", "C6938T", "-6952A", "-6981G", "-6982A", "-6983A", "-6984A", "-6985A", "-6986T", "A6987G", "-6990A", "A6992C", "-6993A", "A6996G", "G6997A", "A6998G", "T7000A", "A7010G", "G7026A", "A7089T", "T7150G", "A7155C", "A7163-", "A7195G", "G7212A", "G7232A", "A7246G", "C7429T", "C7463T", "A7640G", "C7690T", "A7733C", "G7744A", "T7774C", "A7840G", "C7898A", "G7965A", "G7992A", "C8005A", "G8006A", "T8007G", "C8009A", "G8030C", "A8076G", "G8085T", "C8092A", "A8093G", "A8143G", "G8161A", "T8206C", "T8221C", "A8228G", "T8235C", "C8323T", "G8439A", "T8440C", "A8459G", "A8536G", "A8643G", "G8798T", "G8817A", "A8823G", "A8827G", "G8846A", "G8861A", "G8864T", "T8974A"], "INT": ["S124G", "V165I"], "RT-p51": ["V118I", "K166R", "H315C"], "RT-p66": ["V118I", "K166R", "H315C", "S468P", "K512R"], "gp120": ["S1R", "S3L", "V10I", "D21E", "K31R", "N102H", "N105D", "N113-", "K141Q", "K158G", "H324Y", "K329T", "M345T", "I386V", "R391K", "E412M", "N432K", "I447M", "S453N", "V460I"], "gp41": ["M54L", "N113D", "K144Q", "Q199K", "G221E", "V235R", "A243P", "H258R", "R261I", "F263L", "I264V", "R277S", "I309V", "I311T"], "nef": ["V33T", "E65G", "Y81F", "I101V", "E152D", "G159R", "N161D", "M168I", "M173I", "E174D"], "p17": ["A54S", "N109K", "K110R"], "p2": ["T8Q", "N9Q", "-11A", "-12S", "I13V"], "p24": ["T110N"], "p6": ["K31R", "K33R", "H35Q"], "pro": ["I15V"], "rev": ["I18A", "R53K", "A54E", "E79D", "H82S", "R99G", "E105K"], "tat": ["V31A", "K40Q", "D64G", "H65Y", "I69L", "E86K"], "vif": ["I63M", "I66V", "H80Q", "I87M"], "vpr": ["N48S"], "vpu": ["A50E"]}, "labels": {"aa": "INT: S124G, V165I; RT-p51: V118I, K166R, H315C; RT-p66: V118I, K166R, H315C, S468P, K512R; gp120: S1R, S3L, V10I, D21E, K31R, N102H, N105D, N113-, K141Q, K158G, H324Y, K329T, M345T, I386V, R391K, E412M, N432K, I447M, S453N, V460I; gp41: M54L, N113D, K144Q, Q199K, G221E, V235R, A243P, H258R, R261I, F263L, I264V, R277S, I309V, I311T; nef: V33T, E65G, Y81F, I101V, E152D, G159R, N161D, M168I, M173I, E174D; p17: A54S, N109K, K110R; p2: T8Q, N9Q, -11A, -12S, I13V; p24: T110N; p6: K31R, K33R, H35Q; pro: I15V; rev: I18A, R53K, A54E, E79D, H82S, R99G, E105K; tat: V31A, K40Q, D64G, H65Y, I69L, E86K; vif: I63M, I66V, H80Q, I87M; vpr: N48S; vpu: A50E"}}}, {"name": "KC183779", "node_attrs": {"div": 0.13794, "accession": "KC183779", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2011.0}, "Strain_name": {"value": "ANHUI_HF115"}, "LANL_subtype": {"value": "CRF67_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A417C", "G424A", "G425A", "G579A", "A585G", "C586T", "A613C", "G716A", "C771G", "T974C", "G1619A", "T1682C", "C1750T", "-1786A", "T1792C", "A2008G", "A2090T", "A2091G", "T2095C", "C2149A", "A2332G", "A2350G", "A2380G", "G2392A", "A2413G", "T2431A", "A2463G", "T2521C", "T2542A", "A2614T", "C2615A", "T2890C", "G3162A", "A3238G", "G3250A", "A3367G", "A3651G", "A3787G", "A3923C", "T3946C", "G4145A", "G4148A", "T4258C", "T4288C", "T4656A", "G4677A", "C4871A", "A4888G", "G5123A", "C5438A", "A5446C", "A5447C", "C5482T", "T5515C", "C5980T", "A6031G", "-6172G", "A6180C", "T6181A", "C6196T", "-6198C", "-6204T", "-6205A", "A6206G", "-6210A", "-6211T", "-6215A", "-6216C", "-6217A", "-6218G", "-6219A", "-6220T", "-6221G", "-6222A", "G6227-", "A6228-", "C6317G", "T6334G", "C6370T", "C6618T", "C6669T", "G6726C", "C6729A", "A6733C", "A6805T", "C6807A", "T6808A", "A6818G", "A6819G", "A6825G", "G6906A", "A6937C", "A6947-", "G6948-", "T6949-", "A6950-", "C6951-", "-6986G", "-6990C", "-6993T", "G7004A", "A7088G", "T7144G", "A7148G", "-7164A", "-7165T", "T7192C", "G7456A", "C7463A", "G7534A", "A7540G", "A7574G", "A7626T", "A7795C", "C7801A", "T7939G", "A8032C", "A8036T", "A8050G", "C8051A", "G8130A", "G8212A", "C8213T", "A8288T", "C8336G", "G8393A", "A8396C", "T8411C", "T8584A", "G8590C", "A8643C", "G8807A", "C8828A", "C9018T"], "INT": ["M50L", "A125T"], "RT-p51": ["N123S", "K173N", "Q174K", "R356K"], "RT-p66": ["N123S", "K173N", "Q174K", "R356K", "N519S", "A554T"], "gp120": ["T104S", "-106A", "-108L", "-109N", "-111T", "-112T", "-115N", "-117T", "-120I", "-121G", "-122N", "-123I", "-124T", "Q155E", "N160K", "T255I", "S272F", "G291T", "T292K", "D294I", "T318K", "K322G", "H324R", "R351K", "K361N", "S365E", "-367M", "-383N", "-384S", "N432D", "-433N"], "gp41": ["I91V", "Y108F", "N166K", "H212Q", "D230G", "I245F", "L304F", "I329F", "L345V"], "nef": ["E18D", "G83A", "I101L", "S162K"], "p17": ["K28Q", "R30K", "V82I", "T84V", "E93A"], "p24": ["P14A"], "p6": ["S23F", "L38S"], "pro": ["N98C"], "rev": ["S31A", "T62P", "T68E"], "tat": ["A21D", "K24P", "Y47H", "I77S"], "vif": ["L24I", "V31I", "S95R", "D101G"], "vpr": ["D7N"]}, "labels": {"aa": "INT: M50L, A125T; RT-p51: N123S, K173N, Q174K, R356K; RT-p66: N123S, K173N, Q174K, R356K, N519S, A554T; gp120: T104S, -106A, -108L, -109N, -111T, -112T, -115N, -117T, -120I, -121G, -122N, -123I, -124T, Q155E, N160K, T255I, S272F, G291T, T292K, D294I, T318K, K322G, H324R, R351K, K361N, S365E, -367M, -383N, -384S, N432D, -433N; gp41: I91V, Y108F, N166K, H212Q, D230G, I245F, L304F, I329F, L345V; nef: E18D, G83A, I101L, S162K; p17: K28Q, R30K, V82I, T84V, E93A; p24: P14A; p6: S23F, L38S; pro: N98C; rev: S31A, T62P, T68E; tat: A21D, K24P, Y47H, I77S; vif: L24I, V31I, S95R, D101G; vpr: D7N"}}}]}, {"name": "other_NODE_0000003", "node_attrs": {"div": 0.10864, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G614T", "T1444C", "G1562A", "A1644C", "A2075C", "A2210G", "G2273A", "G2392T", "T2605C", "A2707G", "C2714G", "A2920G", "T2930C", "A2932G", "T2944C", "A2951G", "C2953T", "A2968C", "G2969A", "A2980G", "A2983T", "G2995A", "G3029A", "A3031C", "A3034T", "A3037G", "G3046A", "A3071G", "A3080G", "G3088A", "G3091A", "A3097G", "G3099A", "G3142A", "A3160C", "T3165A", "G3166A", "G3170T", "G3171C", "C3175T", "A3192G", "G3205A", "C3207T", "G3334A", "G3364A", "G3379A", "A3391C", "A3409G", "A3435G", "A3448G", "T3449C", "G3473A", "A3490G", "T3493A", "C3496T", "C3508G", "G3520A", "G3529A", "A3535T", "A3538G", "T3541C", "T3567C", "C3577T", "A3616G", "T3628C", "G3643A", "T3644A", "T3652C", "C3665G", "T3668C", "G3695T", "A3718G", "A3755T", "T3757A", "A3769G", "C3799T", "T3826C", "C3856T", "G3866A", "A3952G", "C3962T", "T3991C", "A4063G", "A4109G", "C4110T", "C4129T", "C4159A", "G4177T", "A4178G", "A4181C", "G4183A", "G4697A", "C4820T", "A5246G", "G5385A", "G5712A", "A5734G", "C6183A", "A6195G", "-6215G", "-6216A", "-6218A", "-6219A", "G6323A", "T6717C", "A6752C", "T6849G", "-6955G", "G7964A", "A8032T", "G8239A", "A8469G", "A8486G", "A8827G", "A8947T"], "INT": ["V31I", "T124A"], "RT-p51": ["V60I", "T286A", "E291D", "V292I", "I326V", "I329V", "G335D", "M357K", "G359S", "K366R", "A371V", "E432D"], "RT-p66": ["V60I", "T286A", "E291D", "V292I", "I326V", "I329V", "G335D", "M357K", "G359S", "K366R", "A371V", "E432D", "N447S", "D460N", "D471E", "Q480H", "L491S", "L517I", "Q524E", "A534S"], "gp120": ["N105-", "D157N", "V288A", "K300Q", "I332K"], "gp41": ["G221R", "I298T"], "nef": ["I43V", "I48M", "Y202F"], "p2": ["V7A"], "pro": ["L63P", "I93L"], "rev": ["T62S"], "vpr": ["G94S"], "vpu": ["I43V"]}, "labels": {"aa": "INT: V31I, T124A; RT-p51: V60I, T286A, E291D, V292I, I326V, I329V, G335D, M357K, G359S, K366R, A371V, E432D; RT-p66: V60I, T286A, E291D, V292I, I326V, I329V, G335D, M357K, G359S, K366R, A371V, E432D, N447S, D460N, D471E, Q480H, L491S, L517I, Q524E, A534S; gp120: N105-, D157N, V288A, K300Q, I332K; gp41: G221R, I298T; nef: I43V, I48M, Y202F; p2: V7A; pro: L63P, I93L; rev: T62S; vpr: G94S; vpu: I43V"}}, "children": [{"name": "EF165539", "node_attrs": {"div": 0.14485, "accession": "EF165539", "clade_membership": {"value": "other"}, "country": {"value": "TH"}, "date": 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"A5396G", "C5432A", "A5433G", "G5444C", "A5446T", "A5447C", "T5451C", "C5454T", "A5463G", "G5471A", "G5472T", "A5480C", "C5482G", "A5484T", "C5491A", "G5493A", "A5494T", "A5495C", "A5537G", "A5581G", "G5599C", "G5620C", "C5641T", "G5643A", "A5644G", "T5660C", "A5670T", "G5686C", "C5687T", "A5706T", "G5717A", "A5718G", "A5742G", "T5793C", "A5848G", "T5870C", "T5899A", "G5915A", "C5944T", "A5955T", "C5984T", "C5989T", "C6004T", "T6024C", "C6026A", "C6052T", "C6097T", "T6142C", "C6145A", "C6148T", "A6159G", "T6160A", "A6167G", "-6172G", "A6179C", "T6181C", "A6185G", "T6187G", "C6189A", "A6192C", "T6193A", "G6195C", "A6197T", "-6198T", "-6202C", "G6207A", "-6210C", "-6211A", "A6212G", "T6213G", "-6217G", "A6219T", "-6222A", "-6225A", "-6226A", "-6229T", "-6230G", "T6241C", "T6250C", "G6260T", "A6266T", "A6303G", "C6317T", "A6326G", "T6328G", "A6329T", "A6330C", "A6333G", "A6335G", "A6338G", "-6340G", "G6376A", "T6395A", "T6421C", "C6496T", "C6548T", "C6559A", "C6563T", "T6598C", "C6599A", "C6632T", "T6634G", "G6644A", "G6693C", "-6697G", "A6703-", "C6713A", "A6734G", "T6735A", "A6736C", "G6743A", "A6754G", "A6757C", "G6773A", "G6774A", "A6780T", "A6797G", "A6798G", "A6818C", "C6826T", "T6853C", "A6856G", "A6859G", "C6861A", "A6868G", "T6943C", "-6956G", "-6957A", "-6958A", "-6959A", "-6960A", "-6961T", "-6968G", "-6969G", "-6970G", "-6971A", "-6972T", "-6973C", "-6974A", "-6975T", "-6976G", "-6977A", "-6978A", "-6979G", "-6980G", "-6981G", "-6982G", "-6983G", "-6984G", "-6985T", "-6986A", "-6987A", "-6988T", "-6989G", "-6991C", "-6993C", "-6994T", "-6995A", "T7000C", "-7002A", "-7005C", "C7008T", "T7009A", "C7012A", "A7013-", "T7014-", "A7015-", "G7054A", "A7063G", "T7081C", "A7094G", "A7095T", "A7152C", "A7155G", "T7156C", "A7157G", "A7160C", "A7161C", "-7164G", "A7193C", "A7225G", "G7269A", "G7276A", "A7313C", "A7373T", "A7399T", "G7534A", "A7570C", "C7597T", "A7646C", "T7675C", "C7691A", "A7703T", "A7705G", "A7721G", "G7750A", "T7757C", "G7759T", "T7774C", "A7800G", "A7818G", "A7847G", "T7865G", "C7874T", "G7915A", "C7926T", "A7931T", "T7932C", "A7977G", "G8001A", "A8002G", "A8023G", "G8036A", "C8092A", "A8093C", "C8106T", "G8130A", "C8131A", "C8149G", "T8196C", "T8206C", "G8219A", "G8231A", "C8232T", "C8268T", "A8273G", "T8279G", "A8284G", "T8287C", "A8348G", "C8369T", "A8370G", "A8409G", "A8453G", "G8506T", "T8507G", "G8516A", "A8517G", "G8528A", "A8540G", "G8561A", "A8573G", "T8585C", "A8587G", "G8590C", "T8594C", "T8597G", "T8607C", "T8608A", "G8637A", "G8666C", "T8675C", "C8684T", "C8690T", "C8715G", "A8717C", "C8789A", "C8790-", "C8791-", "A8792-", "A8793-", "G8794-", "A8795-", "G8796-", "A8797-", "A8798-", "A8822G", "C8843T", "G8848A", "A8858G", "G8864T", "G8868C", "A8869C", "A8870G", "A8873G", "G8882A", "C8883T", "G8885A", "G8904A", "C8905G", "C8913T", "G8914T", "A8915T", "A8916C", "A8918T", "T8923A", "A8933G", "A8953C", "G8955A", "A8966T", "A8967C", "A8970G", "-8971A", "-8978C", "-8979A", "T8980A", "A8981G", "-8988T", "A9026G", "G9027A", "T9028C", "T9040G", "A9042G", "C9068T", "C9075T", "T9078C"], "INT": ["E11D", "S17T", "S24D", "D25E", "I31V", "M50L", "K111R", "I113V", "A124T", "V165I", "I201V", "I203M", "T218S", "I234L", "G283S", "D286N"], "RT-p51": ["T35V", "I60V", "D123S", "I135T", "S162A", "V189I", "Q197E", "T200I", "Q207G", "R211S", "F214L", "E245K", "K275Q", "E312N", "P345Q", "F346Y", "R358G", "T369A", "E370A", "K395R", "T403S"], "RT-p66": ["T35V", "I60V", "D123S", "I135T", "S162A", "V189I", "Q197E", "T200I", "Q207G", "R211S", "F214L", "E245K", "K275Q", "E312N", "P345Q", "F346Y", "R358G", "T369A", "E370A", "K395R", "T403S", "R448K", "L452T", "E471D", "S491P", "K512S", "I526V", "V559I"], "gp120": ["D21N", "E34V", "H44Y", "L58M", "N102R", "-105D", "-106V", "-107N", "-109K", "N113-", "-124G", "R138S", "K150R", "P155S", "N158E", "N159S", "N160S", "S161G", "S181T", "L249I", "V264I", "H280P", "I281M", "Q287K", "D297N", "G307K", "K309I", "K315G", "K322Q", "K332R", "P336H", "K361N", "-368E", "-369N", "-382G", "-383I", "-384M", "N414V", "-433T", "N434S", "N435D", "T436P", "N437S", "I447L", "R472K"], "gp41": ["I4L", "I24L", "Q32H", "M115L", "Q130K", "I134L", "N140D", "N166S", "K172R", "I182V", "F188V", "L191F", "T208I", "T210S", "E225G", "R233K", "A245I", "F263L", "I264L", "A268V", "A306T", "T307V", "A310I", "A322V", "R324G", "W326G"], "nef": ["I10V", "T23A", "C55M", "R59E", "K82R", "G83A", "F85L", "F89H", "E98D", "G99R", "E108D", "Q125D", "D149E", "P150V", "R151-", "E152-", "V153-", "S169N", "E174D", "E176P", "A188S", "R191F", "K192H", "I194K", "K204T", "D205N"], "p1": ["K4R", "N9S"], "p17": ["I61M", "T81A", "E93D", "K127N", "Q130H"], "p24": ["P14A", "I91N", "P92A", "M96L", "G116A", "S120N", "R154K", "N183H"], "p6": ["T8S", "S14D", "T23S", "Q26-", "P30K", "K33Q", "-36P"], "p7": ["Q9H", "K10R", "R11V"], "pro": ["L19Q", "K20R", "P63M", "V82I"], "rev": ["S7N", "T8A", "Y28F", "I52V", "I59V", "C63Y", "H82T", "Q95K", "Q101E"], "tat": ["N7S", "N12K", "T19K", "S23T", "N24S", "W32Y", "Q35P", "L36V", "L39I", "K40S", "H54R", "I69V", "P73S", "S75P"], "vif": ["R19K", "T20A", "V31C", "F39S", "R41K", "R47I", "V51I", "E61D", "R67V", "Q73H", "R90K", "Q91K", "R92E", "D101K", "L109Q", "I128L", "R130S", "R132I", "T151A", "K158R", "I159K", "K167T", "K179R", "R181K", "N186S", "P187H", "M189L"], "vpr": ["N16A", "P37V", "N48E", "E55A", "L68M", "V70I", "I74M", "I84T", "P85R", "G86Q", "G89A", "A93T", "S96P"], "vpu": ["E5Q", "I13V", "L18S", "A27L", "R37K", "N81D"]}, "labels": {"aa": "INT: E11D, S17T, S24D, D25E, I31V, M50L, K111R, I113V, A124T, V165I, I201V, I203M, T218S, I234L, G283S, D286N; RT-p51: T35V, I60V, D123S, I135T, S162A, V189I, Q197E, T200I, Q207G, R211S, F214L, E245K, K275Q, E312N, P345Q, F346Y, R358G, T369A, E370A, K395R, T403S; RT-p66: T35V, I60V, D123S, I135T, S162A, V189I, Q197E, T200I, Q207G, R211S, F214L, E245K, K275Q, E312N, P345Q, F346Y, R358G, T369A, E370A, K395R, T403S, R448K, L452T, E471D, S491P, K512S, I526V, V559I; gp120: D21N, E34V, H44Y, L58M, N102R, -105D, -106V, -107N, -109K, N113-, -124G, R138S, K150R, P155S, N158E, N159S, N160S, S161G, S181T, L249I, V264I, H280P, I281M, Q287K, D297N, G307K, K309I, K315G, K322Q, K332R, P336H, K361N, -368E, -369N, -382G, -383I, -384M, N414V, -433T, N434S, N435D, T436P, N437S, I447L, R472K; gp41: I4L, I24L, Q32H, M115L, Q130K, I134L, N140D, N166S, K172R, I182V, F188V, L191F, T208I, T210S, E225G, R233K, A245I, F263L, I264L, A268V, A306T, T307V, A310I, A322V, R324G, W326G; nef: I10V, T23A, C55M, R59E, K82R, G83A, F85L, F89H, E98D, G99R, E108D, Q125D, D149E, P150V, R151-, E152-, V153-, S169N, E174D, E176P, A188S, R191F, K192H, I194K, K204T, D205N; p1: K4R, N9S; p17: I61M, T81A, E93D, K127N, Q130H; p24: P14A, I91N, P92A, M96L, G116A, S120N, R154K, N183H; p6: T8S, S14D, T23S, Q26-, P30K, K33Q, -36P; p7: Q9H, K10R, R11V; pro: L19Q, K20R, P63M, V82I; rev: S7N, T8A, Y28F, I52V, I59V, C63Y, H82T, Q95K, Q101E; tat: N7S, N12K, T19K, S23T, N24S, W32Y, Q35P, L36V, L39I, K40S, H54R, I69V, P73S, S75P; vif: R19K, T20A, V31C, F39S, R41K, R47I, V51I, E61D, R67V, Q73H, R90K, Q91K, R92E, D101K, L109Q, I128L, R130S, R132I, T151A, K158R, I159K, K167T, K179R, R181K, N186S, P187H, M189L; vpr: N16A, P37V, N48E, E55A, L68M, V70I, I74M, I84T, P85R, G86Q, G89A, A93T, S96P; vpu: E5Q, I13V, L18S, A27L, R37K, N81D"}}}, {"name": "other_NODE_0000005", "node_attrs": {"div": 0.13381, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A303T", "C471G", "T531C", "T614A", "G709A", "T1457-", "G1773-", "A1774-", "A1777-", "C1853A", "G2177A", "A2182G", "A2189G", "G2198A", "A2202C", "C2211A", "A2212T", "T2266C", "T2281C", "G2287A", "A2290G", "A2305G", "A2329G", "A2593G", "A2752G", "C2818A", "G2828C", "C2845T", "A3208G", "C3542T", "A3808G", "T3865C", "C3908T", "G4060A", "C4078A", "C4195A", "A4285G", "T4288C", "C4321T", "T4706C", "A4726G", "C4761T", "C4800T", "G4817A", "T4832A", "C4841T", "G4856A", "C4857T", "A4858T", "G4870C", "T4883A", "C4889T", "A4892G", "A4901G", "C4911T", "A4913G", "C4914T", "T4932G", "G4975T", "A4988C", "C5006T", "C5018T", "T5027C", "A5045G", "C5047T", "C5050A", "A5094G", "A5148T", "T5171C", "T5182C", "A5186C", "T5188G", "-6210T", "G6215A", "C6278G", "A6638G", "G6764A", "T6787C", "G6788A", "-6834A", "-6835T", "G6849A", "G6997A", "A6998G", "T7147-", "A7195G", "T7918G", "A7935C", "T7936G", "C7937A", "T7939C", "A7941C", "G7942A", "A7943G", "A7962G", "T8047C", "C8213T", "C8741T", "A8873C", "A8977-", "T9074G", "A9097G"], "INT": ["L101I", "T112V"], "RT-p51": ["E28K", "K32E", "E36A", "T39D", "E245Q", "A272P"], "RT-p66": ["E28K", "K32E", "E36A", "T39D", "E245Q", "A272P", "H483Y"], "gp120": ["Q142E", "K262E", "H280R", "E312K", "-327N", "N328-", "I447M"], "gp41": ["Q213P", "R214G", "L340F"], "nef": ["F120Y"], "p17": ["L46V", "S66P", "S125N"], "pro": ["L19I"], "rev": ["S30E", "S31P", "E32R"], "tat": ["I76R", "I77T", "R78Q", "K85E"], "vif": ["R67K", "Q91L", "D99E", "H110Y", "S116A", "R130I", "E134D", "T154I", "T155K"], "vpr": ["Y15F", "N28Q"]}, "labels": {"aa": "INT: L101I, T112V; RT-p51: E28K, K32E, E36A, T39D, E245Q, A272P; RT-p66: E28K, K32E, E36A, T39D, E245Q, A272P, H483Y; gp120: Q142E, K262E, H280R, E312K, -327N, N328-, I447M; gp41: Q213P, R214G, L340F; nef: F120Y; p17: L46V, S66P, S125N; pro: L19I; rev: S30E, S31P, E32R; tat: I76R, I77T, R78Q, K85E; vif: R67K, Q91L, D99E, H110Y, S116A, R130I, E134D, T154I, T155K; vpr: Y15F, N28Q"}}, "children": [{"name": "other_NODE_0000006", "node_attrs": {"div": 0.15328000000000003, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T435C", "G774T", "A1586G", "-1730G", "A3030C", "A3304G", "A3316G", "C3358T", "T3359C", "A3671G", "C3751T", "A3816G", "C3823T", "A4174C", "G4175A", "G4176A", "A4182G", "T4198C", "C4204T", "G4769A", "C4937A", "G5412T", "A5587G", "G5956T", "G6088A", "T6115C", "A6136G", "T6142A", "C6148T", "T6151C", "T6160C", "C6166A", "-6172T", "A6177G", "A6186G", "C6189G", "C6190T", "-6198G", "-6202T", "-6203A", "-6204G", "-6205T", "-6217G", "G6224-", "-6230A", "A6232G", "G6234A", "C6238T", "T6241C", "T6247C", "T6252C", "G6253A", "C6263G", "A6303G", "T6446C", "C6511T", "G6577A", "A6584G", "C6586T", "C6601G", "C6619A", "G6628A", "C6631T", "C6669G", "C6692A", "T6694G", "G6716A", "C6721T", "A6725G", "G6726C", "T6745C", "T6758C", "G6766C", "A6771G", "C6777G", "A6781T", "A6797C", "C6800A", "G6806A", "C6807G", "A6819C", "G6823A", "T6829C", "-6830C", "-6832A", "-6833A", "A6836-", "A6837-", "T6838-", "G6841A", "A6848C", "C6854A", "A6855C", "C6857T", "C6860T", "A6871G", "T6874C", "T6888C", "G6889A", "C6893A", "A6894G", "T6895C", "A6932T", "A6935G", "A6936G", "T6952A", "G6954A", "-6956A", "-6986A", "-6987A", "-6988T", "-6989A", "-6991T", "-6993C", "-6994A", "-6995A", "-7002G", "-7005C", "T7009C", "C7016A", "T7018C", "G7027A", "C7045T", "G7056A", "A7057G", "A7060G", "A7065G", "C7087T", "A7088G", "G7089C", "T7090A", "A7096C", "T7099A", "A7101C", "T7102A", "G7106A", "T7107A", "T7117C", "A7124C", "G7132A", "A7133G", "C7134T", "A7136C", "A7138T", "T7144A", "-7147A", "T7156A", "-7164C", "C7165A", "T7171A", "A7177G", "A7190G", "A7197G", "A7234G", "C7238G", "A7688G", "C7921G", "C7929T", "A7947G", "T8287C", "A8323C", "G8469A"], "INT": ["K14R", "A21T", "G134N", "I135V", "K136R"], "RT-p51": ["E312T"], "RT-p66": ["E312T", "K512R", "I526V"], "gp120": ["E34D", "-114S", "-115S", "I126M", "M133T", "L137V", "K150R", "I244V", "S272G", "A288T", "R291A", "Y302H", "E304N", "N306S", "K309N", "K315H", "Q316N", "A318S", "K322A", "-326Q", "K332Q", "Q334A", "P335S", "P336S", "M345T", "H347S", "T360S", "K361G", "W367Y", "-378N", "-379S", "-380T", "L388I", "G401E", "Q404R", "S412A", "N416T", "V418K", "I424L", "T427V", "N446D", "K448R", "Q462E"], "gp41": ["N129D", "E133A", "F206L", "P209L", "T210I", "H211P", "H212N", "E215G", "E220G", "T307V"], "nef": ["V43I", "R151T", "S169N"], "p2": ["T8Q", "N9Q"], "p24": ["V15L"], "p6": ["S14N"], "tat": ["K71E", "N80D"], "vif": ["D117E", "T188S"], "vpr": ["I63M"]}, "labels": {"aa": "INT: K14R, A21T, G134N, I135V, K136R; RT-p51: E312T; RT-p66: E312T, K512R, I526V; gp120: E34D, -114S, -115S, I126M, M133T, L137V, K150R, I244V, S272G, A288T, R291A, Y302H, E304N, N306S, K309N, K315H, Q316N, A318S, K322A, -326Q, K332Q, Q334A, P335S, P336S, M345T, H347S, T360S, K361G, W367Y, -378N, -379S, -380T, L388I, G401E, Q404R, S412A, N416T, V418K, I424L, T427V, N446D, K448R, Q462E; gp41: N129D, E133A, F206L, P209L, T210I, H211P, H212N, E215G, E220G, T307V; nef: V43I, R151T, S169N; p2: T8Q, N9Q; p24: V15L; p6: S14N; tat: K71E, N80D; vif: D117E, T188S; vpr: I63M"}}, "children": [{"name": "KJ778895", "node_attrs": {"div": 0.19156000000000004, "accession": "KJ778895", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "kang019a_NFL"}, "LANL_subtype": {"value": "CRF115_01C"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T213C", "T214G", "-217A", "G354A", "A417C", "G424A", "A440G", "G579A", "C590T", "C623T", "G654A", "A656G", "T662A", "A664G", "G716A", "C756G", "A757T", "A758G", "G770A", "C771T", "T782A", "A791G", "A803G", "C830T", "A854T", "C875T", "T917C", "A956G", "T978G", "T1052C", "A1101G", "A1109G", "C1115A", "A1176G", "A1263T", "A1352G", "T1358C", "G1388A", "A1404G", "G1438A", "C1444T", "T1451G", "-1452A", "-1458A", "-1459A", "-1460G", "A1494C", "C1514T", "A1562G", "A1567G", "A1642G", "G1661A", "C1706A", "C1721T", "C1741T", "A1758G", "A1759G", "-1773C", "-1774C", "-1776C", "-1777G", "-1781C", "-1783A", "-1784C", "-1785C", "-1786C", "T1796C", "T1873C", "A1907G", "G1912A", "A1963G", "A1969G", "C1996T", "A2002G", "T2013C", "A2038G", "T2095C", "T2104C", "A2127C", "A2131G", "T2236C", "G2293A", "A2327C", "A2380G", "A2398G", "G2401A", "A2403G", "A2404G", "G2422A", "T2443C", "G2447A", "G2462A", "A2463G", "C2467T", "G2470A", "T2499C", "C2503T", "T2521C", "C2584T", "A2613T", "C2615A", "C2626A", "A2665C", "G2682A", "T2689C", "C2694G", "A2715C", "A2716T", "G2722A", "G2725A", "G2728C", "T2735C", "C2740T", "A2743C", "G2752A", "A2755G", "T2776C", "A2794G", "A2808G", "A2818C", "C2828G", "G2830C", "C2909G", "G2921A", "G2951A", "A2974G", "A2986G", "A3010G", "A3088G", "A3099G", "A3124G", "T3262C", "A3279G", "C3322A", "G3344A", "C3376T", "T3412G", "G3463C", "C3475T", "A3478G", "C3500T", "T3566C", "C3628T", "A3643G", "C3668T", "A3676G", "G3808C", "G3836A", "C3843T", "C3857T", "A3901G", "G3907A", "A3916G", "C3922T", "A3937G", "G3952A", "T3970C", "T3977C", "T4009C", "A4012G", "C4015T", "T4042C", "A4112G", "T4117C", "T4144C", "G4145A", "C4181A", "C4471T", "A4498C", "A4531G", "A4564G", "T4606C", "G4677A", "G4695A", "G4696A", "A4697T", "T4702C", "C4706T", "C4724T", "A4725C", "G4726A", "A4727G", "C4728A", "A4736G", "C4833A", "A4937G", "A5059G", "G5060A", "T5062C", "A5065G", "A5085C", "C5091T", "G5094A", "G5099A", "C5125T", "G5140A", "C5162T", "G5167A", "C5168T", "T5170G", "C5171T", "G5176A", "C5182T", "G5185A", "C5186A", "G5188T", "G5246A", "C5268A", "T5293G", "C5303T", "T5333C", "A5385G", "A5431T", "G5437A", "C5438A", "G5444A", "C5445T", "A5499G", "C5552A", "A5564G", "G5565A", "A5567G", "T5568C", "A5581G", "G5619A", "A5670T", "G5673A", "T5679C", "G5686C", "C5687T", "G5700A", "A5715G", "G5734A", "A5737G", "G5739T", "A5769G", "G5851A", "G5864A", "T5917A", "T5956C", "A5957C", "T5971C", "A5983G", "C5984T", "C6004T", "T6024C", "G6028A", "G6085T", "C6160A", "T6170A", "T6187C", "-6211A", "A6212G", "A6216T", "A6218G", "A6220G", "-6222C", "-6224T", "-6225G", "-6226A", "-6229A", "A6235G", "A6257T", "G6260T", "A6323G", "T6325C", "A6329G", "A6333G", "A6338G", "-6340A", "A6450G", "A6489C", "C6599A", "T6634C", "C6652T", "A6654C", "T6655A", "C6661A", "C6667T", "T6668G", "C6673T", "C6684A", "A6723T", "G6773T", "G6774T", "A6775C", "A6778T", "A6799T", "G6802T", "A6818G", "C6824T", "-6831C", "T6892C", "G6940A", "G6955C", "-6957T", "-6958G", "-6959A", "-6960C", "-6961G", "-6962A", "-6963A", "-6964T", "-6969G", "-6970G", "-6971G", "-6972A", "-6973T", "-6974A", "-6975T", "-6976T", "-6977T", "-6978A", "-6979A", "-6982G", "-6983T", "-6984A", "-6985T", "A6990G", "A6992G", "A7004T", "C7006G", "C7008A", "A7129G", "A7151G", "A7152G", "A7155C", "G7182A", "G7291T", "G7339A", "G7534A", "G7568A", "G7569A", "A7570C", "T7656C", "A7689G", "A7698T", "A7701C", "G7702A", "G7759A", "C7775T", "A7800G", "T7801A", "A7846G", "T7968C", "C7984A", "G7997A", "C8005G", "T8032G", "G8036T", "T8060A", "C8062T", "G8098A", "T8171C", "G8181C", "T8213G", "G8255A", "A8282G", "A8288C", "C8293T", "G8349A", "G8350A", "G8354A", "A8364G", "T8450C", "A8455C", "T8477C", "G8486A", "T8507C", "A8517C", "T8543C", "G8554A", "A8555G", "T8558G", "T8568C", "A8615T", "G8666C", "T8675C", "C8684T", "C8688A", "G8794C", "A8798G", "A8803C", "G8817A", "T8835C", "G8848A", "G8861A", "A8869C", "C8873A", "G8904T", "G8942A", "G8945T", "C8951T", "-8971G", "-8977A", "-8978A", "-8979C", "C9039T", "G9132T"], "INT": ["E11D", "A23V", "I113V", "A124T"], "RT-p51": ["K11T", "K103R", "V118I", "D123S", "I135T", "K173I", "Q174K", "D177E", "G196E", "T200R", "Q207A", "R211S", "F214L", "K238R", "Q245D", "P272A", "V276I", "A286T", "D335G", "K395R", "V417I"], "RT-p66": ["K11T", "K103R", "V118I", "D123S", "I135T", "K173I", "Q174K", "D177E", "G196E", "T200R", "Q207A", "R211S", "F214L", "K238R", "Q245D", "P272A", "V276I", "A286T", "D335G", "K395R", "V417I", "S491P"], "gp120": ["D4N", "D21E", "T35P", "H44Y", "Q77H", "N102K", "-109I", "-111S", "-112N", "T135S", "R138T", "N157D", "N159D", "N160S", "K199R", "K212T", "L249M", "N267T", "T277K", "Y290F", "D294A", "G307F", "T308S", "H324Y", "Q326P", "A334T", "-368M", "-377Y", "T380A", "-381K", "-382D", "-383S", "-384S", "T385N", "N432K", "-433A", "T436N", "N437T", "G443E", "E479D"], "gp41": ["G89N", "I118T", "D129G", "Y132F", "N166R", "I222T", "D232N", "A245F", "C253S", "R277S", "G293A", "T298I", "L304V", "V318I", "R327G", "I329L"], "nef": ["G3N", "S8G", "D38A", "M48I", "C55S", "R59Q", "R71K", "L91F", "E98D", "E108D", "H116N", "Y120F", "E154A", "G159R", "M173I", "E176A", "A188S", "E201D"], "p1": ["K4R"], "p17": ["V7I", "K28Q", "R30K", "V82I", "V107M", "N109K", "K110R"], "p2": ["S5N", "A7V", "-10T", "-11K"], "p24": ["Q9V", "P14S", "L83V", "I124V", "D128E", "S149G", "T178S", "S225G"], "p6": ["T21I", "T23P", "K27E", "E29K", "K31R", "K33H", "D34P", "H35P"], "p7": ["K10Q", "K34R"], "pro": ["N37D", "I72T"], "rev": ["S7N", "L13I", "R17E", "I18A", "R50K", "R53G", "S62A", "C63F", "S67P", "V71E", "P72S", "D84N", "V108A"], "tat": ["T19S", "A21N", "S23N", "P59H", "K63R", "D64G", "I69V", "S87P"], "vif": ["V7A", "V31I", "G37N", "F39S", "R47Q", "H48N", "H83N", "S95T", "K158R", "I159T", "K160R", "K167Q", "T180I", "G185E"], "vpr": ["Q28N", "I84M", "S94G"], "vpu": ["A27L", "V43I", "K44D", "V82M"]}, "labels": {"aa": "INT: E11D, A23V, I113V, A124T; RT-p51: K11T, K103R, V118I, D123S, I135T, K173I, Q174K, D177E, G196E, T200R, Q207A, R211S, F214L, K238R, Q245D, P272A, V276I, A286T, D335G, K395R, V417I; RT-p66: K11T, K103R, V118I, D123S, I135T, K173I, Q174K, D177E, G196E, T200R, Q207A, R211S, F214L, K238R, Q245D, P272A, V276I, A286T, D335G, K395R, V417I, S491P; gp120: D4N, D21E, T35P, H44Y, Q77H, N102K, -109I, -111S, -112N, T135S, R138T, N157D, N159D, N160S, K199R, K212T, L249M, N267T, T277K, Y290F, D294A, G307F, T308S, H324Y, Q326P, A334T, -368M, -377Y, T380A, -381K, -382D, -383S, -384S, T385N, N432K, -433A, T436N, N437T, G443E, E479D; gp41: G89N, I118T, D129G, Y132F, N166R, I222T, D232N, A245F, C253S, R277S, G293A, T298I, L304V, V318I, R327G, I329L; nef: G3N, S8G, D38A, M48I, C55S, R59Q, R71K, L91F, E98D, E108D, H116N, Y120F, E154A, G159R, M173I, E176A, A188S, E201D; p1: K4R; p17: V7I, K28Q, R30K, V82I, V107M, N109K, K110R; p2: S5N, A7V, -10T, -11K; p24: Q9V, P14S, L83V, I124V, D128E, S149G, T178S, S225G; p6: T21I, T23P, K27E, E29K, K31R, K33H, D34P, H35P; p7: K10Q, K34R; pro: N37D, I72T; rev: S7N, L13I, R17E, I18A, R50K, R53G, S62A, C63F, S67P, V71E, P72S, D84N, V108A; tat: T19S, A21N, S23N, P59H, K63R, D64G, I69V, S87P; vif: V7A, V31I, G37N, F39S, R47Q, H48N, H83N, S95T, K158R, I159T, K160R, K167Q, T180I, G185E; vpr: Q28N, I84M, S94G; vpu: A27L, V43I, K44D, V82M"}}}, {"name": "other_NODE_0000007", "node_attrs": {"div": 0.17605000000000004, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C722T", "-1455A", "-1747C", "A1754-", "A1835G", "A1972G", "T1978A", "T1987C", "A2003C", "A2005T", "T2632C", "C2653T", "T2671C", "A2677G", "G2707A", "G2714C", "C2720T", "G2764A", "A2788G", "A2838T", "A2840C", "C3129A", "T3132A", "G3264A", "C3319T", "A3772G", "A4195G", "T4276G", "G4354A", "A4721G", "G4737A", "G5082A", "C5095T", "T5515C", "A5535G", "G5556A", "G5599A", "T5602A", "A5611T", "C5641T", "A5696T", "T5707C", "A5712G", "T5793-", "C5944T", "C5951T", "A5962G", "G5965A", "C5968T", "C5974T", "C5980T", "A6022G", "C6023G", "C6026T", "A6065G", "C6067A", "G6074A", "G6076T", "T6139C", "A6183G", "-6211C", "A6223-", "C6267G", "C6286G", "G6304A", "A6320C", "A6326G", "G6346A", "T6364C", "T6369C", "T6373A", "A6375C", "G6376A", "G6379A", "T6382C", "A6392G", "A6394C", "C6397G", "T6418C", "A6430T", "G6442A", "A6448T", "A6465G", "T6466G", "G6481A", "T6487C", "A6488C", "A6490T", "C6496T", "C6499T", "A6520G", "T6545C", "C6559T", "T6562C", "G6572A", "C6787G", "-6831A", "A6854G", "-6958T", "T7014C", "A7108G", "A7160G", "A7243T", "G7244A", "A7246G", "C7250T", "A7252G", "C7267T", "A7268G", "G7270A", "G7276A", "A7279G", "A7322G", "A7325T", "T7328C", "C7344T", "A7373G", "A7375G", "A7402G", "T7403C", "G7456A", "A7477G", "G7501A", "G7502A", "G7517A", "G7519A", "A7541C", "T7544C", "C7553A", "A7574C", "G7594A", "C7597T", "T7607A", "C7608G", "T7618C", "T7625C", "T7627A", "G7628A", "A7629C", "C7642T", "A7651C", "A7657G", "G7658C", "G7666T", "G7668A", "C7678T", "C7691A", "A7692C", "T7699C", "G7700A", "A7701G", "A7703T", "A7705G", "A7709G", "C7710A", "A7713T", "A7714C", "G7720A", "C7732A", "A7735G", "A7741G", "G7744A", "T7748C", "G7750A", "A7755C", "T7762C", "A7764G", "A7765T", "G7769A", "C7770A", "G7773A", "G7777A", "A7885G", "C7959T", "T8337A", "A8505T", "A8540G", "T8585C", "T8636A", "C8640T", "C8651T", "T8701A", "T8775C", "T8786G", "A8917G", "T9060A"], "INT": ["D167E"], "RT-p51": ["E248V", "K249Q", "P345Q", "F346Y", "R390K"], "RT-p66": ["E248V", "K249Q", "P345Q", "F346Y", "R390K"], "gp120": ["H33Y", "P57V", "N71E", "E74N", "L136I", "I156L", "N158E", "V172A", "K174T", "I180V", "N204R", "K212H", "E240K", "N311K", "-369N", "-371T", "I387T"], "gp41": ["M7V", "I8F", "F9L", "A14V", "I24V", "A67T", "V72I", "K80Q", "F81L", "L84I", "I91L", "Y108Q", "E109T", "I118M", "E119Q", "E121D", "R122K", "Q130T", "A133S", "I134L", "T136E", "E137V", "D143E", "E151A", "K154S", "A156K", "S157N", "P219L", "L345Q"], "p2": ["-12N"], "pro": ["I13V", "D60E", "K69H"], "rev": ["R14K"], "tat": ["Y47H", "P84S"], "vif": ["V51I", "V166I", "T170V"], "vpu": ["T2S", "Y30F"]}, "labels": {"aa": "INT: D167E; RT-p51: E248V, K249Q, P345Q, F346Y, R390K; RT-p66: E248V, K249Q, P345Q, F346Y, R390K; gp120: H33Y, P57V, N71E, E74N, L136I, I156L, N158E, V172A, K174T, I180V, N204R, K212H, E240K, N311K, -369N, -371T, I387T; gp41: M7V, I8F, F9L, A14V, I24V, A67T, V72I, K80Q, F81L, L84I, I91L, Y108Q, E109T, I118M, E119Q, E121D, R122K, Q130T, A133S, I134L, T136E, E137V, D143E, E151A, K154S, A156K, S157N, P219L, L345Q; p2: -12N; pro: I13V, D60E, K69H; rev: R14K; tat: Y47H, P84S; vif: V51I, V166I, T170V; vpu: T2S, Y30F"}}, "children": [{"name": "MT919517", "node_attrs": {"div": 0.22118000000000004, "accession": "MT919517", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "LS11584"}, "LANL_subtype": {"value": "CRF109_0107"}}, "branch_attrs": {"mutations": {"nuc": ["A356G", "G361C", "A388G", "G424A", "G471C", "C531T", "A576G", "A581G", "G597A", "A614C", "G615A", "T635C", "A645C", "G665A", "G690A", "G697A", "A699G", "A709G", "C710T", "C731T", "A743G", "G747C", "C748T", "A749C", "T773C", "T774A", "A809G", "G823C", "A829G", "G866A", "T884C", "T890C", "T892C", "G893C", "T902C", "T904C", "A926C", "G932A", "G935A", "A944C", "A959G", "G977A", 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"T2087C", "T2095C", "T2116G", "C2149A", "A2164G", "G2173A", "A2177G", "G2182A", "G2189A", "T2195C", "C2202A", "G2210A", "T2212A", "A2222G", "T2236C", "C2266T", "A2273G", "C2281T", "A2287G", "G2290A", "T2302C", "G2305A", "G2329A", "A2332G", "A2350G", "A2398G", "G2401A", "A2404G", "G2422A", "T2452C", "G2462A", "A2463G", "C2467T", "G2470A", "G2530A", "A2578G", "A2746C", "T2770C", "A2881G", "G2951A", "A2974C", "A3001G", "T3002C", "A3010G", "T3131C", "T3139C", "T3197C", "T3253C", "A3279G", "G3435A", "C3499T", "G3538A", "T3577C", "C3610T", "A3637T", "A3684G", "C3688T", "T3721C", "T3850C", "A3866G", "A3886G", "C3889T", "A3899C", "T3908C", "T3946C", "A3955C", "A3973C", "A3988G", "A4021C", "T4024C", "A4036G", "A4105T", "C4132T", "A4219G", "A4225G", "T4234C", "T4236G", "G4276A", "T4321A", "C4404G", "A4644G", "G4695A", "G4696A", "A4697T", "T4761G", "C4870A", "T4889C", "T4917C", "C5027T", "T5028C", "A5050G", "C5125T", "G5140A", "T5148C", "T5197C", "T5203C", "G5212A", "C5215A", "C5221T", "G5236A", "C5248A", "T5251A", "G5257A", "T5260C", "T5275G", "T5281C", "T5292C", "T5294C", "G5296A", "C5303A", "A5305G", "C5334A", "A5336T", "A5355T", "C5358A", "C5359G", "G5361C", "G5362A", "G5363A", "G5370A", "G5371C", "C5372A", "G5375A", "C5432A", "T5448C", "C5482T", "A5548G", "A5570G", "A5607T", "G5692C", "T5695C", "A5701G", "A5703C", "A5718G", "G5739A", "G5791-", "A5792-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "G5799-", "C5801A", "A5803G", "A5805G", "C5806T", "T5808G", "-5809G", "-5810C", "-5811C", "G5839A", "T5852A", "C5862T", "T5896C", "A6020G", "G6085T", "T6100C", "A6113G", "A6159C", "C6174G", "T6184C", "G6189A", "A6192G", "A6194G", "C6196T", "G6198A", "A6201G", "A6208T", "T6210C", "A6212C", "A6214T", "A6215G", "A6216G", "A6220C", "-6222T", "-6223G", "-6224C", "-6225A", "-6226G", "-6229A", "G6260A", "G6278C", "A6282G", "G6283A", "A6327G", "A6329G", "T6334C", "A6335T", "G6336C", "A6339G", "-6340T", "A6450G", "A6589C", "G6647C", "G6669T", "G6773A", "G6774A", "A6779C", "A6785G", "C6797G", "T6808A", "A6809G", "A6810T", "C6819T", "A6881G", "A6884G", "C6919T", "A6947G", "G6948A", "T6949G", "A6956T", "-6957C", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964T", "-6965A", "-6966C", "-6967A", "-6968G", "-6969T", "-6970T", "A6995G", "G6998A", "G7002A", "A7004T", "C7006G", "A7015G", "A7107G", "A7155C", "T7162G", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "A7171-", "G7256A", "A7492G", "A7552G", "G7633A", "A7641G", "C7684T", "G7702T", "C7714T", "C7939T", "A7942G", "C7984A", "A7992G", "A8002G", "A8011C", "T8032A", "G8036T", "C8092A", "G8098A", "G8130T", "G8180A", "C8189T", "T8196C", "T8213C", "A8228G", "G8241A", "C8277T", "T8279G", "C8323A", "G8404A", "G8407A", "T8444C", "C8480T", "G8516A", "A8518G", "G8528A", "A8536G", "A8717C", "A8793G", "G8794T", "A8797T", "A8801G", "G8848A", "G8864T", "C8873T", "C8903T", "G8942C", "T8947A", "C8951T", "-8971G", "-8977A", "-8978A", "-8979C"], "INT": ["T21A", "I31V", "K42Q", "M154R", "T210S"], "RT-p51": ["K28E", "E32K", "A36E", "D39K", "K43E", "I60V", "D123S", "A286T", "Y346H", "K395R"], "RT-p66": ["K28E", "E32K", "A36E", "D39K", "K43E", "I60V", "D123S", "A286T", "Y346H", "K395R", "S447N", "E514D", "K530R"], "gp120": ["S3L", "I56V", "Q77H", "S87G", "N102T", "N108-", "T110-", "S114F", "-116S", "-117G", "-118N", "-119M", "-120Q", "E142Q", "K143R", "E158G", "N159D", "E162S", "K199R", "R245S", "E265Q", "G272F", "G307K", "T308R", "N309H", "K311E", "H315E", "N316K", "S318R", "K319V", "A322I", "I343V", "T344A", "S365E", "-368P", "-370S", "-372V", "S379N", "-381E", "-382N", "-383N", "-384S", "K418R", "N432L", "E464K", "V468I", "R472G"], "gp41": ["N113S", "D230G", "A245F", "F263L", "G293S", "I309V", "G313E", "A325V", "W326G", "F340L"], "nef": ["R21K", "R22Q", "Q125H", "T151V", "E152V", "E174D", "E177D", "K192R", "F202Y"], "p1": ["K4R"], "p17": ["S9T", "K18R", "R30K", "V46L", "P66S", "T81A", "V88I", "E93D", "V94I", "I104L", "A119T", "G121D", "T122A", "N125S"], "p2": ["-10H", "-11T"], "p24": ["A6L", "L15I", "G31A", "N33S", "M54T", "I58T", "M68I", "E71D", "P92A", "M96L", "G116A", "S120A", "I124V", "V148T", "R154K", "Y169F", "E180D", "E187D", "S200T", "K203R", "T207P", "T210S", "L211I"], "p6": ["T5P", "A12E", "N14S", "W15F", "G16R", "M17C", "T21I", "S24P", "L25S", "K31I", "D32-", "K33-", "D34-", "H35-", "P37-", "L38-", "V39T", "N47S", "S51L"], "pro": ["I36M", "L93I"], "rev": ["I19V", "P31S", "R32G", "I52V", "I55L", "S62T", "C63F", "S67P", "H82N", "D84N", "G111E", "T114I"], "tat": ["T19K", "T58A", "H65R", "T77I", "Q78R"], "vif": ["T20A", "G37N", "L59V", "S95N", "Y111H", "K155R", "T180I", "G185E", "S188P"], "vpr": ["F15S", "N48E", "E55A", "M63T", "L67M", "Q77N", "I84L", "P85R", "G86Q", "G89T"], "vpu": ["E29Q", "F30L", "K32D", "V78I", "V82E"]}, "labels": {"aa": "INT: T21A, I31V, K42Q, M154R, T210S; RT-p51: K28E, E32K, A36E, D39K, K43E, I60V, D123S, A286T, Y346H, K395R; RT-p66: K28E, E32K, A36E, D39K, K43E, I60V, D123S, A286T, Y346H, K395R, S447N, E514D, K530R; gp120: S3L, I56V, Q77H, S87G, N102T, N108-, T110-, S114F, -116S, -117G, -118N, -119M, -120Q, E142Q, K143R, E158G, N159D, E162S, K199R, R245S, E265Q, G272F, G307K, T308R, N309H, K311E, H315E, N316K, S318R, K319V, A322I, I343V, T344A, S365E, -368P, -370S, -372V, S379N, -381E, -382N, -383N, -384S, K418R, N432L, E464K, V468I, R472G; gp41: N113S, D230G, A245F, F263L, G293S, I309V, G313E, A325V, W326G, F340L; nef: R21K, R22Q, Q125H, T151V, E152V, E174D, E177D, K192R, F202Y; p1: K4R; p17: S9T, K18R, R30K, V46L, P66S, T81A, V88I, E93D, V94I, I104L, A119T, G121D, T122A, N125S; p2: -10H, -11T; p24: A6L, L15I, G31A, N33S, M54T, I58T, M68I, E71D, P92A, M96L, G116A, S120A, I124V, V148T, R154K, Y169F, E180D, E187D, S200T, K203R, T207P, T210S, L211I; p6: T5P, A12E, N14S, W15F, G16R, M17C, T21I, S24P, L25S, K31I, D32-, K33-, D34-, H35-, P37-, L38-, V39T, N47S, S51L; pro: I36M, L93I; rev: I19V, P31S, R32G, I52V, I55L, S62T, C63F, S67P, H82N, D84N, G111E, T114I; tat: T19K, T58A, H65R, T77I, Q78R; vif: T20A, G37N, L59V, S95N, Y111H, K155R, T180I, G185E, S188P; vpr: F15S, N48E, E55A, M63T, L67M, Q77N, I84L, P85R, G86Q, G89T; vpu: E29Q, F30L, K32D, V78I, V82E"}}}, {"name": "MH843712", "node_attrs": {"div": 0.21133000000000005, "accession": "MH843712", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2011.0}, "Strain_name": {"value": "YA285"}, "LANL_subtype": {"value": "CRF80_0107"}}, "branch_attrs": {"mutations": {"nuc": ["-217T", "A278-", "G279-", "C300-", "A301-", "T303A", "-304A", "-305A", "G378A", "T473C", "C587T", "C590T", "G716C", "A749G", "A758G", "G770A", "C771T", "A791G", "A803G", "C830T", "A854T", "T917C", "T974C", "T978G", "T1052C", "C1060A", "A1074G", "A1109G", "A1176G", "A1263T", "T1322C", "G1438A", "-1452G", "-1456A", "-1457T", "G1469A", "T1482C", "C1491T", "A1492C", "G1493A", "A1526G", "T1616G", "T1628G", "G1718A", "A1745C", "-1746T", "-1748C", "C1749T", "T1752-", "C1753-", "A1759G", "G1763A", "-1773G", "-1774A", "-1776A", "-1777A", "-1781C", "-1783A", "-1784T", "-1785C", "-1786C", "G2023A", "C2057A", "A2063T", "T2101C", "C2113A", "T2129C", "T2237A", "G2293A", "C2353T", "T2383C", "T2392A", "A2413G", "A2419G", "A2431G", "G2456T", "G2473A", "T2485C", "G2509A", "A2518G", "A2524G", "G2539A", "G2542T", "C2575T", "G2593A", "C2605T", "A2699C", "G2710A", "C2848T", "G2869A", "A2872G", "C2885T", "T2890C", "A2902G", "A2911T", "G2920A", "A2925G", "G2926A", "G2932T", "C2944T", "A2950G", "T2953C", "A2998G", "C3013T", "G3085A", "C3160T", "A3200G", "C3201T", "G3438A", "G3477A", "A3715G", "G3796A", "G3836A", "C3865T", "G3907A", "A3916G", "C3922A", "A3937G", "A3953C", "T3970C", "T3977C", "T4009C", "A4012G", "C4015T", "T4042C", "T4075C", "A4076C", "A4078G", "T4117C", "T4144C", "G4156A", "T4258C", "G4285A", "G4353A", "A4354C", "A4531G", "T4537C", "T4585A", "T4606C", "A4608C", "G4636A", "C4652T", "T4667C", "C4679T", "A4682T", "A4684G", "G4685A", "A4687G", "A4694T", "T4820G", "G4855A", "A4869G", "A4878C", "A4888G", "T5006C", "A5085G", "A5134G", "C5146A", "G5246A", "C5268A", "A5290G", "T5293G", "T5333C", "A5355G", "A5385G", "C5454T", "G5545A", "A5599C", "T5660C", "A5737G", "-5793G", "G5864A", "T5896G", "G5915A", "T5917A", "C6165T", "T6170G", "T6187C", "G6195A", "A6201C", "T6202C", "A6203C", "G6204T", "A6206C", "G6207A", "A6208G", "T6210A", "A6214G", "A6215C", "A6218G", "A6221-", "G6227-", "A6228-", "G6280A", "T6287C", "A6324G", "T6328A", "T6331C", "A6332T", "A6333C", "A6338G", "-6340G", "T6424C", "T6500A", "A6508G", "T6523A", "C6612T", "G6638A", "C6652T", "A6653G", "A6654T", "T6655A", "C6661A", "C6667T", "T6668G", "C6673T", "C6684A", "A6734G", "T6735A", "C6766T", "A6776G", "G6777A", "A6779G", "A6790T", "A6799T", "G6802T", "A6818G", "G6955C", "-6957A", "-6980G", "-6981G", "-6982T", "-6983A", "-6984C", "-6985A", "A6986T", "A6987T", "C6993G", "A6994T", "A6996T", "A6999G", "T7000A", "T7003C", "C7005A", "A7111T", "A7148G", "T7150A", "A7151G", "T7153G", "C7170T", "T7192C", "C7201T", "A7237G", "G7269A", "A7313C", "G7428A", "A7463C", "C7546T", "A7640G", "T7675C", "G7790A", "A7846G", "T7876C", "A7998C", "G8019C", "T8037C", "C8047T", "A8076G", "G8085A", "T8094G", "A8143G", "A8173G", "C8202T", "G8216A", "G8329A", "C8342A", "A8348G", "A8360G", "G8375T", "A8378C", "C8385G", "G8387T", "G8388A", "C8390A", "A8397C", "A8402G", "G8405A", "C8412A", "C8413A", "T8414G", "A8425C", "A8426T", "A8429G", "A8432G", "A8446G", "T8450C", "A8453G", "T8456A", "A8471C", "T8485C", "G8486A", "-8487G", "-8488C", "-8489A", "-8490G", "-8491A", "-8492G", "A8494C", "T8509C", "C8510A", "C8514T", "A8517G", "G8520A", "G8529A", "A8530C", "G8561A", "A8584T", "A8618G", "G8619-", "A8620-", "A8678G", "C8699T", "G8732A", "A8739G", "A8744G", "A8746T", "A8753G", "T8754A", "G8755C", "A8762G", "G8784A", "C8791A", "A8795G", "G8804A", "A8809C", "A8814G", "A8823G", "G8827A", "C8832T", "T8835C", "C8843T", "A8844G", "C8867T", "G8871C", "G8882A", "C8883T", "G8885A", "G8888A", "G8904C", "C8905A", "C8906A", "G8914A", "A8915C", "T8923G", "A8924G", "A8930C", "G8936A", "C8948T", "A8966C", "A8970-", "T8972-", "T8973-", "T8974-", "C8975-", "T8976-", "T8980A", "A8981G", "-8988T", "T8993-", "G9006C", "C9017T", "G9019T", "A9026G", "G9027A", "T9028C", "G9033-", "C9039T", "T9040C", "C9068T", "G9074T", "C9075T", "T9078C"], "INT": ["I60L", "I101L", "G193D", "D270E", "D278A"], "RT-p51": ["D6E", "S48T", "D121Y", "I202L", "K277R", "T369V"], "RT-p66": ["D6E", "S48T", "D121Y", "I202L", "K277R", "T369V", "R448K", "R461K"], "gp120": ["D4N", "D21K", "I56M", "T104I", "-109V", "-111S", "-112N", "N113S", "-116N", "-117N", "-118S", "-119T", "-120L", "-121Q", "-122N", "-123M", "-124Q", "I136V", "Y145H", "N157S", "N160S", "S216T", "A253V", "E262K", "N267V", "T277K", "D294E", "T308E", "N309D", "K312N", "-370G", "-372F", "-373N", "-374S", "-375I", "-376G", "-377S", "T385-", "N432E", "-433E"], "gp41": ["I4L", "S42N", "M54L", "N113D", "S133R", "D163N", "D232A", "S239T", "H258R", "R261K", "I264S", "T298I", "A300V", "L304F", "D305N"], "nef": ["Q15D", "V16I", "I20M", "P24K", "E28A", "Q35R", "D38E", "M48T", "N49A", "-50E", "-51T", "V56A", "R59E", "A60T", "E63T", "Y81F", "E93-"], "p17": ["A15T", "K127N"], "p2": ["S5N", "Q9H", "-11A"], "p24": ["P14S", "L83V", "T110N", "I115V", "S149G", "T178S"], "p6": ["T23S", "Q26R", "K27-", "P30Q", "-36P"], "p7": ["M1I", "F6L", "Q9S"], "pro": ["M89L"], "rev": ["R50S", "E57D", "H82Q", "R99G", "I109V"], "tat": ["G57R"], "vif": ["V7A", "M8L", "R17K", "K33R", "K34R", "K36N", "D78E", "R90K", "S95A", "I98L", "D101G", "K167E", "H183R", "P187H"], "vpr": ["I84V", "S94G"], "vpu": ["L18S", "K44E", "D62E"]}, "labels": {"aa": "INT: I60L, I101L, G193D, D270E, D278A; RT-p51: D6E, S48T, D121Y, I202L, K277R, T369V; RT-p66: D6E, S48T, D121Y, I202L, K277R, T369V, R448K, R461K; gp120: D4N, D21K, I56M, T104I, -109V, -111S, -112N, N113S, -116N, -117N, -118S, -119T, -120L, -121Q, -122N, -123M, -124Q, I136V, Y145H, N157S, N160S, S216T, A253V, E262K, N267V, T277K, D294E, T308E, N309D, K312N, -370G, -372F, -373N, -374S, -375I, -376G, -377S, T385-, N432E, -433E; gp41: I4L, S42N, M54L, N113D, S133R, D163N, D232A, S239T, H258R, R261K, I264S, T298I, A300V, L304F, D305N; nef: Q15D, V16I, I20M, P24K, E28A, Q35R, D38E, M48T, N49A, -50E, -51T, V56A, R59E, A60T, E63T, Y81F, E93-; p17: A15T, K127N; p2: S5N, Q9H, -11A; p24: P14S, L83V, T110N, I115V, S149G, T178S; p6: T23S, Q26R, K27-, P30Q, -36P; p7: M1I, F6L, Q9S; pro: M89L; rev: R50S, E57D, H82Q, R99G, I109V; tat: G57R; vif: V7A, M8L, R17K, K33R, K34R, K36N, D78E, R90K, S95A, I98L, D101G, K167E, H183R, P187H; vpr: I84V, S94G; vpu: L18S, K44E, D62E"}}}]}]}, {"name": "other_NODE_0000008", "node_attrs": {"div": 0.14562, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A263T", "A265G", "-304T", "G697A", "T890C", "C1453-", "A1532G", "A1656C", "T1903A", "C1996T", "C2353T", "T2392A", "A2413G", "A2431G", "G2456T", "G2473A", "G2509A", "A2518G", "A2524G", "C2626A", "A2872G", "A2902G", "A2950G", "A3029G", "A3076T", "A3142G", "A3214G", "A3226G", "A3274C", "A3292G", "A3307C", "A3334G", 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E162S, N251D; nef: S162N, E177D; p17: G121D; p2: A7-; tat: H54Q; vif: R17K, K34R, P187H; vpr: N48E, E55A, I63T; vpu: D73N"}}, "children": [{"name": "other_NODE_0000009", "node_attrs": {"div": 0.18343, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G129A", "T131G", "A132G", "A136T", "G139A", "T141G", "C143-", "C144-", "T145-", "C146-", "A147-", "G148-", "A149-", "C150-", "C151-", "T154-", "T156-", "A157-", "G158-", "-167G", "-171G", "C173T", "G181-", "G256A", "A302T", "-305A", "G361C", "A388G", "A423C", "G424A", "G425T", "G428T", "A534G", "C558T", "T560A", "G607A", "G716A", "A764C", "G770A", "A785G", "A791G", "A803G", "A854T", "A968C", "T974C", "T978G", "T979C", "T1052C", "A1109G", "C1187T", "T1325C", "T1335C", "A1367G", "-1452G", "-1453T", "-1455A", "-1456A", "-1457T", "G1488A", "G1489A", "G1493A", "C1523T", "A1525G", "T1628G", "A1657T", "T1676C", "A1719G", "-1730G", "A1745-", "C1749T", "-1773G", "-1774A", "-1776A", "-1777G", "-1781C", "-1783A", 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"A6648G", "C6678T", "A6689T", "A6691C", "C6717T", "T6722C", "G6726A", "C6752A", "A6798G", "A6801T", "-6833A", "T6835G", "T6853C", "A6856G", "A6868G", "T6943C", "C6951G", "-6956A", "-6957T", "-6958A", "-6959A", "-6960A", "-6962G", "-6963A", "-6965A", "-6968A", "-6971A", "-6972A", "-6991C", "-6995G", "T7000A", "-7005A", "G7026A", "G7027A", "C7045T", "G7054A", "G7055A", "A7085G", "A7095T", "T7107C", "-7147G", "A7161C", "T7162A", "-7164A", "A7183G", "G7289A", "A7290G", "G7291T", "G7366A", "G7450T", "G7534A", "A7542C", "T7609G", "T7622A", "T7624A", "T7636C", "C7706A", "G7712A", "A7721G", "T7757C", "G7759T", "A7846G", "T7876G", "G7883A", "T7912C", "T7913C", "G7915A", "C7921G", "C7929T", "G7944C", "C7959T", "C7984A", "A8029G", "G8030A", "C8031G", "G8079A", "A8093G", "T8094G", "C8112T", "G8145T", "T8167C", "G8219A", "G8241A", "G8274C", "T8279G", "A8284G", "T8337A", "G8354A", "G8398A", "C8406A", "G8407A", "C8415G", "G8421A", "A8518G", "G8531A", "T8585C", "T8594A", "C8640T", "C8651T", "A8660G", "A8717C", "C8751T", "A8859G", "G8861A", "G8902C", "C8903T", "G8942T", "G8982-", "T9060A", "G9106A", "-9109T", "C9115T", "G9132-", "C9133-", "A9134-", "A9135-", "G9136-", "G9137-", "G9138-", "A9139-", "A9140-", "C9141-", "C9142-", "C9143-", "A9144-", "C9145-", "T9146-", "G9147-", "C9148-"], "INT": ["S17N", "I135L", "K136Q"], "RT-p51": ["K11T", "K173T", "Q174K", "E248V", "K249Q", "V326I", "V329I", "T338S", "R390K"], "RT-p66": ["K11T", "K173T", "Q174K", "E248V", "K249Q", "V326I", "V329I", "T338S", "R390K", "L452V", "K512R"], "gp120": ["R18K", "N21T", "H33Y", "E34K", "P57F", "E59K", "N64D", "-105D", "-106A", "-107Q", "I126V", "N132Y", "T134K", "T135S", "L136I", "R138A", "Y145N", "P155S", "I156M", "N159K", "I180V", "S181T", "Y195F", "I244L", "E247Q", "L249F", "E265V", "T275I", "I279Y", "A288V", "Y290H", "R291K", "Q300K", "E304K", "K309E", "K315R", "Q316L", "K319R", "-326K", "T366S", "-368I", "-369G", "-380T", "-381E", "-382G", "-384D", "R391K", "G401R", "V402T", "I411V", "S412R", "N414I", "V418A", "-433D", "N434R", "N435T", "E479S"], "gp41": ["E49D", "K80T", "S107T", "W117*", "S125G", "N129K", "L135I", "E137K", "N140D", "M176I", "I186-"], "nef": ["R19K", "R22K", "P25A", "A27T", "C55S", "E65D", "Y81F", "Q125H", "I133T", "M173V", "S187T"], "p1": ["N9L"], "p17": ["S9T", "K18R", "R30H", "M31I", "T67A", "R91K"], "p2": ["-10V"], "p24": ["E79D", "L83A", "K199R"], "p6": ["S14D", "T23S", "Q26-", "P30Q", "-36P"], "p7": ["G8N", "K20R"], "pro": ["K20R", "D35E", "P63T"], "rev": ["S5R", "G6E", "S7D", "T8N", "R14K", "I18T", "K20R", "R32S", "S61E", "S67P", "H82R", "R99S", "S107P"], "tat": ["N12K", "T19K", "S23T", "W32F", "L36V", "L39I", "G42A", "K53R", "G57R", "S61G", "K63E", "P68L", "P70S", "G79R", "P84S"], "vif": ["V31I", "K33R", "K36N", "R41K", "V51I", "L64I", "R90K", "R92G", "S95N", "D101S", "H127Y", "Q136L", "I159R", "V166I", "T170V", "H183R", "T188S"], "vpr": ["Q77H", "I84S", "P85R", "G86Q", "G89M"], "vpu": ["T2Q", "E5T", "S7L", "G11A", "I13V", "L16T", "A27L", "V43I", "K44E", "R47T", "F74L", "P76H", "N81A"]}, "labels": {"aa": "INT: S17N, I135L, K136Q; RT-p51: K11T, K173T, Q174K, E248V, K249Q, V326I, V329I, T338S, R390K; RT-p66: K11T, K173T, Q174K, E248V, K249Q, V326I, V329I, T338S, R390K, L452V, K512R; gp120: R18K, N21T, H33Y, E34K, P57F, E59K, N64D, -105D, -106A, -107Q, I126V, N132Y, T134K, T135S, L136I, R138A, Y145N, P155S, I156M, N159K, I180V, S181T, Y195F, I244L, E247Q, L249F, E265V, T275I, I279Y, A288V, Y290H, R291K, Q300K, E304K, K309E, K315R, Q316L, K319R, -326K, T366S, -368I, -369G, -380T, -381E, -382G, -384D, R391K, G401R, V402T, I411V, S412R, N414I, V418A, -433D, N434R, N435T, E479S; gp41: E49D, K80T, S107T, W117*, S125G, N129K, L135I, E137K, N140D, M176I, I186-; nef: R19K, R22K, P25A, A27T, C55S, E65D, Y81F, Q125H, I133T, M173V, S187T; p1: N9L; p17: S9T, K18R, R30H, M31I, T67A, R91K; p2: -10V; p24: E79D, L83A, K199R; p6: S14D, T23S, Q26-, P30Q, -36P; p7: G8N, K20R; pro: K20R, D35E, P63T; rev: S5R, G6E, S7D, T8N, R14K, I18T, K20R, R32S, S61E, S67P, H82R, R99S, S107P; tat: N12K, T19K, S23T, W32F, L36V, L39I, G42A, K53R, G57R, S61G, K63E, P68L, P70S, G79R, P84S; vif: V31I, K33R, K36N, R41K, V51I, L64I, R90K, R92G, S95N, D101S, H127Y, Q136L, I159R, V166I, T170V, H183R, T188S; vpr: Q77H, I84S, P85R, G86Q, G89M; vpu: T2Q, E5T, S7L, G11A, I13V, L16T, A27L, V43I, K44E, R47T, F74L, P76H, N81A"}}, "children": [{"name": "MN178645", "node_attrs": {"div": 0.20287, "accession": "MN178645", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "FY336"}, "LANL_subtype": {"value": "CRF102_0107"}}, "branch_attrs": {"mutations": {"nuc": ["-217T", "A437G", "A518G", "G629A", "T662G", "T788C", "T1100C", "C1118T", "T1181A", "A1241G", "T1322C", "C1449A", "C1511T", "A1642G", "-1745C", "G1777A", "A1855G", "A1915G", "T2080C", "A2089G", "T2104C", "A2149G", "T2449C", "A2578G", "T2608C", "A2641G", "A2726G", "G2727C", "A2788G", "A3027G", "A3046C", "T3052C", "C3067T", "A3070G", "A3091G", 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"C7582T", "A7630T", "G7633A", "T7656G", "A7660C", "G7702C", "G7717A", "A7721G", "G7734A", "G7750A", "T7757C", "G7759T", "G7769A", "A7772G", "T7774C", "A7799C", "T7801A", "C7805T", "C7843T", "T7844A", "T7866G", "C7874G", "G7918T", "A7931T", "T7932C", "C7935A", "G7936T", "A7937C", "C7941A", "A7942G", "G7943A", "G7962A", "A7964G", "A7977G", "A8011C", "C8047T", "C8050T", "T8094G", "G8098A", "C8149G", "T8182C", "A8204G", "A8284G", "A8299C", "C8336G", "T8366C", "G8404A", "A8441G", "A8497G", "C8500A", "A8518G", "G8528A", "A8536G", "A8555G", "T8558G", "T8568C", "T8594C", "T8675C", "G8678A", "A8717C", "G8794A", "T8800C", "A8812G", "A8827C", "G8861A", "G8875A", "C8903T", "G8904A", "A8938G", "G8942T", "T8947A", "C8951T", "-8971G", "-8975C", "-8977A", "-8978A", "-8979C", "T9060A"], "INT": ["E11D", "I31V", "V32I", "D41H", "I135L", "K136Q", "I220V", "S255N"], "RT-p51": ["Y121H", "I135T", "K173I", "Q174K", "G196E", "T200I", "E207A", "R211S", "F214L", "K238R", "Q245E", "P272A", "I309L", "E312T", "P345Q", "F346Y", "T369A", "M377T", "T403A", "A437V"], "RT-p66": ["Y121H", "I135T", "K173I", "Q174K", "G196E", "T200I", "E207A", "R211S", "F214L", "K238R", "Q245E", "P272A", "I309L", "E312T", "P345Q", "F346Y", "T369A", "M377T", "T403A", "A437V", "S491L", "A508T", "K558R"], "gp120": ["D29N", "H44Y", "E59K", "-105N", "-106L", "-107T", "-109T", "T110Q", "-111V", "-112T", "N113K", "-114S", "-115N", "-116K", "-117T", "-118S", "-119V", "-120L", "-121N", "-122E", "-123I", "-124G", "E125N", "K127T", "M133V", "R138S", "Y145H", "N157K", "N158D", "N159K", "N160Q", "N204K", "D251N", "S263Y", "S272F", "-280N", "Q287R", "A318V", "K322R", "-326S", "K332N", "V402A", "N414I", "N432K", "-433D", "N437S", "M447I", "E479D"], "gp41": ["Q32H", "E109D", "I118R", "E119D", "N140D", "A156T", "S157G", "N166Q", "L181I", "F188C", "L191V", "T210S", "P213Q", "G214R", "R221G", "E225G", "A245V", "I264S", "I301V", "L304F", "T307I", "L345V"], "nef": ["R21K", "-50S", "-51D", "N52D", "A53S", "D54V", "C55-", "V56-", "E65G", "E98D", "Y120F", "Q125H", "R151K", "V153A", "N157S", "N162T", "M173I", "R178K", "A188T", "H199R", "F202Y"], "p17": ["A15S", "L34I", "P48S", "E62T", "V82I", "V94I", "I104L", "S111I", "A119K", "T122K", "G123K"], "p2": ["N9H", "-11A", "M14L"], "p24": ["M68I", "E79D", "M96I", "S120G", "L211I", "S225G"], "p6": ["A12E", "T21I", "K31V", "D32-", "L38-"], "p7": ["G4S", "Q9S", "I12T", "R26K"], "pro": ["I19M", "I36M", "N37D", "D60E", "K69H"], "rev": ["Q24N", "Y28F", "E30S", "R32E", "K39R", "I55L", "H82Q", "D84N", "Q101E", "S112P"], "tat": ["Q17K", "N24T", "Q54H", "I69V", "P70Q", "K71Q", "S75P", "R76I", "Q78R", "E85K"], "vif": ["K33R", "K36S", "G37R", "F39V", "V55I", "E61D", "D78E", "S95T", "Q97M", "K157R", "T170V", "H183C", "T188Y", "M189-", "N190-", "G191-", "H192-"], "vpr": ["P10L", "F15L", "N16-", "E17-", "W18-", "T19-", "I60L", "I84V", "S94G"], "vpu": ["T2S", "I6A", "S7C", "V10A", "Y30F", "E70G", "N81D"]}, "labels": {"aa": "INT: E11D, I31V, V32I, D41H, I135L, K136Q, I220V, S255N; RT-p51: Y121H, I135T, K173I, Q174K, G196E, T200I, E207A, R211S, F214L, K238R, Q245E, P272A, I309L, E312T, P345Q, F346Y, T369A, M377T, T403A, A437V; RT-p66: Y121H, I135T, K173I, Q174K, G196E, T200I, E207A, R211S, F214L, K238R, Q245E, P272A, I309L, E312T, P345Q, F346Y, T369A, M377T, T403A, A437V, S491L, A508T, K558R; gp120: D29N, H44Y, E59K, -105N, -106L, -107T, -109T, T110Q, -111V, -112T, N113K, -114S, -115N, -116K, -117T, -118S, -119V, -120L, -121N, -122E, -123I, -124G, E125N, K127T, M133V, R138S, Y145H, N157K, N158D, N159K, N160Q, N204K, D251N, S263Y, S272F, -280N, Q287R, A318V, K322R, -326S, K332N, V402A, N414I, N432K, -433D, N437S, M447I, E479D; gp41: Q32H, E109D, I118R, E119D, N140D, A156T, S157G, N166Q, L181I, F188C, L191V, T210S, P213Q, G214R, R221G, E225G, A245V, I264S, I301V, L304F, T307I, L345V; nef: R21K, -50S, -51D, N52D, A53S, D54V, C55-, V56-, E65G, E98D, Y120F, Q125H, R151K, V153A, N157S, N162T, M173I, R178K, A188T, H199R, F202Y; p17: A15S, L34I, P48S, E62T, V82I, V94I, I104L, S111I, A119K, T122K, G123K; p2: N9H, -11A, M14L; p24: M68I, E79D, M96I, S120G, L211I, S225G; p6: A12E, T21I, K31V, D32-, L38-; p7: G4S, Q9S, I12T, R26K; pro: I19M, I36M, N37D, D60E, K69H; rev: Q24N, Y28F, E30S, R32E, K39R, I55L, H82Q, D84N, Q101E, S112P; tat: Q17K, N24T, Q54H, I69V, P70Q, K71Q, S75P, R76I, Q78R, E85K; vif: K33R, K36S, G37R, F39V, V55I, E61D, D78E, S95T, Q97M, K157R, T170V, H183C, T188Y, M189-, N190-, G191-, H192-; vpr: P10L, F15L, N16-, E17-, W18-, T19-, I60L, I84V, S94G; vpu: T2S, I6A, S7C, V10A, Y30F, E70G, N81D"}}}, {"name": "other_NODE_0000011", "node_attrs": {"div": 0.18087999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G256A", "G428A", "G471C", "T586C", "A644G", "C731T", "A818G", "T852A", "G920A", "A1205G", "T1679C", "T1729-", "G1731-", "G1732-", "G1733-", "G1734-", "A1735-", "A1736C", "T1752G", "G1766A", "A1819G", "A1841G", "A1846G", "A1849C", "A1861G", "A1867C", "G1942A", "G1981A", "T2083C", "T2107C", "A2177G", "G2189A", "C2263T", "A2392G", "G2593A", "T2632C", "T2671C", "G2727A", "G2764A", "A2788G", "A2842G", "C2885T", "T2890C", "T2908C", "G2920A", "A2925G", "G2932T", "C2944T", "G2951A", "T2953C", "G2980A", "G3019A", "C3031A", "T3034A", "G3037A", "A3070G", "G3071A", "G3080A", "A3091G", "A3094G", "T3121C", "T3133C", "A3154G", "C3160A", "G3162A", "A3165T", "A3166G", "T3175C", "G3192A", "A3196G", "A3205G", "T3207C", "G3208T", "C3225T", "C3266T", "T3535A", "T3908C", "A4021C", "T4042C", "A4474C", "A4608C", "A4832T", "T4841C", "T4889C", "T4943C", "C5482G", "G5545A", "T5602-", "G5699A", "G5799-", "T5808G", "A6179G", "A6183C", "G6195-", "T6213-", "C6267G", "A6547G", "C6787T", "G6806A", "G6841A", "C6925T", "G6937A", "-6989A", "-6993C", "A6996-", "A6997-", "A7004-", "C7165-", "T7171C", "A7190G", "A7243T", "G7339A", "T7607A", "C7691A", "A7692C", "C7921T", "A7992G", "T8037C", "C8050G", "C8164T", "A8173G", "G8305A", "G8388A", "A8505T", "T8509C", "G8732A", "T8741C", "A8746T", "T8754A", "G8755C", "T8775C", "A8814G", "C8832T", "T8835C", "C8843T", "A8844G", "A8847T", "G8871C", "G8882A", "C8883T", "G8885A", "G8904C", "C8905A", "A8915C", "A8924G", "A8930C", "G8936A", "C8948T", "A8966C", "T8980A", "A8981G", "G9019T", "A9026G", "G9027A", "T9028C", "T9040C", "G9074T", "T9078C", "T9095A", "G9097T", "G9106A", "-9109T", "C9115T"], "INT": ["I84M"], "RT-p51": ["K28E", "E32K", "R211K", "K277R", "A286T", "V326I", "V329I", "R356K", "K357M", "R366K", "V371A"], "RT-p66": ["K28E", "E32K", "R211K", "K277R", "A286T", "V326I", "V329I", "R356K", "K357M", "R366K", "V371A", "H480Q"], "gp120": ["L136E", "A288-", "A318T", "N446D"], "gp41": ["S102T", "Q130T", "V321A"], "nef": ["V16I", "V56A", "Y135F", "C138T", "K158E", "S169C", "D177H", "A188Q"], "p17": ["V46L", "V84T"], "p24": ["S41T"], "p6": ["G18-", "E19-", "T21E", "S25A", "Q26P", "N47S"], "pro": ["I15V", "D35E"], "rev": ["S7D", "T8S", "S68A", "P106S", "I109V"], "tat": ["G57R"], "vpu": ["R31K"]}, "labels": {"aa": "INT: I84M; RT-p51: K28E, E32K, R211K, K277R, A286T, V326I, V329I, R356K, K357M, R366K, V371A; RT-p66: K28E, E32K, R211K, K277R, A286T, V326I, V329I, R356K, K357M, R366K, V371A, H480Q; gp120: L136E, A288-, A318T, N446D; gp41: S102T, Q130T, V321A; nef: V16I, V56A, Y135F, C138T, K158E, S169C, D177H, A188Q; p17: V46L, V84T; p24: S41T; p6: G18-, E19-, T21E, S25A, Q26P, N47S; pro: I15V, D35E; rev: S7D, T8S, S68A, P106S, I109V; tat: G57R; vpu: R31K"}}, "children": [{"name": "other_NODE_0000012", "node_attrs": {"div": 0.23029999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A389G", "A450C", "G495A", "A512G", "A513C", "A519G", "A521G", "A562G", "A566C", "T571A", "A576C", "C577T", "G579A", "G585A", "C590T", "T596C", "A599G", "A614G", "A645C", "G650A", "A655C", "A665G", "T667G", "T668C", "A677G", "-705A", "-706A", "-707C", "-708A", "-709A", "-710C", "C747A", "C749G", "A791G", "A803G", "G809A", "G810A", "A815G", "A836G", "C872T", "C897T", "C902T", "G908A", "C926T", "T983C", "T988C", "A989G", 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"G5128A", "A5143G", "T5148A", "A5155G", "G5179T", "C5182T", "G5185A", "C5239T", "C5306A", "G5308A", "G5312A", "T5356C", "A5357T", "C5359G", "G5361C", "G5362A", "G5363A", "A5366G", "G5371C", "C5372A", "G5375A", "A5388C", "A5396G", "C5397A", "C5398T", "T5424C", "C5432A", "A5433G", "G5444A", "C5445T", "T5451C", "C5454T", "A5463G", "T5466C", "G5471T", "G5472A", "C5487T", "T5490C", "C5491A", "A5534G", "C5538G", "G5556A", "G5561A", "A5587G", "G5599C", "-5602A", "T5636C", "A5644G", "A5670G", "T5679C", "G5686C", "C5687T", "T5688C", "A5715G", "G5730A", "G5734A", "A5748T", "G5791-", "A5792-", "T5793-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "C5801A", "C5802T", "A5803G", "A5805G", "C5806T", "-5809G", "-5810C", "-5811C", "T5861C", "C5862T", "C5924T", "G5956T", "T5964C", "C6052T", "G6085T", "G6086C", "C6148T", "T6151A", "A6167-", "T6169-", "C6174A", "A6185C", "A6186C", "T6187C", "C6189A", "-6195T", "-6203A", "-6204A", "G6207C", "-6211A", "-6229A", "C6238T", "T6261A", "G6274A", "A6281C", "T6287C", "A6311T", "A6333G", "G6336A", "G6339A", "G6345T", "A6394G", "C6499T", "G6532A", "T6551C", "C6586T", "C6599A", "C6618A", "C6619T", "C6631T", "G6647C", "A6649G", "C6667T", "T6668G", "A6683G", "A6691G", "G6693C", "A6695G", "C6717T", "T6719C", "C6729T", "A6730G", "T6758C", "G6766T", "A6771G", "A6776G", "C6777T", "A6791G", "C6792T", "T6793C", "C6800G", "A6801G", "-6830A", "-6831G", "-6832G", "-6833A", "T6838G", "A6841C", "A6842-", "C6843-", "A6844-", "A6849G", "A6881G", "G6906A", "G6955A", "-6959A", "-6960A", "-6961T", "-6963A", "-6964C", "-6965A", "-6966C", "-6968G", "-6986A", "-6987A", "-6988T", "-6994C", "A6999-", "C7008-", "T7014C", "C7016A", "A7036G", "G7056C", "G7072A", "A7096T", "A7101C", "T7102A", "C7127A", "-7147T", "A7155C", "G7182C", "A7197G", "G7212A", "A7294G", "A7373C", "A7463C", "A7477T", "G7534A", "C7597T", "G7631T", "G7633T", "A7655G", "T7656C", "C7692T", "G7702A", "G7734T", "A7796T", "T7801C", "T7876C", "T7916C", "T7932C", "C7951A", "C7959T", "A8069C", "G8070T", "G8130A", "T8155C", "T8182C", "T8213C", "G8219T", "T8221C", "T8265C", "T8287C", "A8288T", "T8323C", "T8366C", "G8407A", "C8480T", "G8506A", "G8508A", "C8510T", "A8522G", "G8537A", "T8543C", "A8564G", "A8573G", "T8594A", "T8603C"], "INT": ["K14R", "I135V", "D278A", "R284G"], "RT-p51": ["T35V", "A36E", "D39T", "T48S", "I135R", "S162C", "K173A", "Q174R", "I178L", "T200A", "V276T", "K311S", "V317A", "Q334K", "A376S", "M377L", "R390K", "E399D", "D432E", "A435E"], "RT-p66": ["T35V", "A36E", "D39T", "T48S", "I135R", "S162C", "K173A", "Q174R", "I178L", "T200A", "V276T", "K311S", "V317A", "Q334K", "A376S", "M377L", "R390K", "E399D", "D432E", "A435E", "D460N", "R461K", "K464Q", "S468T", "E471D", "C483H", "S491V", "N519S", "Q524E", "R530K", "S534A", "S554T"], "gp120": ["S3L", "N5D", "E34D", "V37A", "Q77H", "E78Q", "N102S", "-112N", "-114I", "-115T", "-124G", "K143Q", "Y145H", "I153L", "N157E", "N160S", "S162D", "R164M", "I180M", "E240K", "L249I", "T255N", "E265Q", "S272A", "K277E", "I281V", "F289L", "R291-", "T292-", "Y302H", "E304N", "N306S", "T308V", "T313V", "Q316G", "-326G", "T330N", "K332S", "I343V", "R351K", "S365-", "W367-", "-378N", "-379N", "-381T", "-382G", "-383N", "-384N", "I387T", "L388I", "G401A", "M406I", "N416T", "L425I", "T436S", "G443A", "K448R", "S453N"], "gp41": ["I24L", "M54L", "E110Y", "I118A", "T130I", "K144I", "T165S", "S205P", "H211P", "H212N", "P219L", "E220G", "S256L", "A306S", "I329F"], "nef": ["R22Q", "C55N", "A56T", "E98D"], "p1": ["K4R"], "p17": ["A54T", "I60L", "K76R", "F79Y", "T81L", "V82I", "I104L", "E106G", "E107A", "-124N", "-125N", "-126S", "-127K"], "p24": ["L6M", "V27I", "V86A", "H87Q", "I91H", "A92P", "M96I", "S120N", "V124I", "S210T"], "p6": ["-33R", "-34E", "-35A", "K42R"], "p7": ["G8N", "K10R", "R11K", "I12T", "V13I"], "pro": ["S12T", "P63T", "K70R"], "rev": ["R14K", "V16I", "S67P", "Q74P", "Q95H", "S103P", "S112P"], "tat": ["N7R", "N12K", "T19K", "S23N", "W32L", "L36V", "L39M", "K53R", "S62N", "K71E", "S75P", "P81Q", "P84S"], "vif": ["V7A", "M8L", "F39S", "E45D", "H48N", "L59V", "V65I", "L91W", "R92E", "I98L", "D101G", "Y111H", "R132S", "K158Q", "I159R", "K167T", "K179R", "R181K", "N186S", "N190S"], "vpr": ["F15Y", "E25D", "I60L", "L68I", "V70I", "I84T", "P85R", "G86Q", "G89A"], "vpu": ["V10A", "I13V", "A27L", "V43I", "R47S"]}, "labels": {"aa": "INT: K14R, I135V, D278A, R284G; RT-p51: T35V, A36E, D39T, T48S, I135R, S162C, K173A, Q174R, I178L, T200A, V276T, K311S, V317A, Q334K, A376S, M377L, R390K, E399D, D432E, A435E; RT-p66: T35V, A36E, D39T, T48S, I135R, S162C, K173A, Q174R, I178L, T200A, V276T, K311S, V317A, Q334K, A376S, M377L, R390K, E399D, D432E, A435E, D460N, R461K, K464Q, S468T, E471D, C483H, S491V, N519S, Q524E, R530K, S534A, S554T; gp120: S3L, N5D, E34D, V37A, Q77H, E78Q, N102S, -112N, -114I, -115T, -124G, K143Q, Y145H, I153L, N157E, N160S, S162D, R164M, I180M, E240K, L249I, T255N, E265Q, S272A, K277E, I281V, F289L, R291-, T292-, Y302H, E304N, N306S, T308V, T313V, Q316G, -326G, T330N, K332S, I343V, R351K, S365-, W367-, -378N, -379N, -381T, -382G, -383N, -384N, I387T, L388I, G401A, M406I, N416T, L425I, T436S, G443A, K448R, S453N; gp41: I24L, M54L, E110Y, I118A, T130I, K144I, T165S, S205P, H211P, H212N, P219L, E220G, S256L, A306S, I329F; nef: R22Q, C55N, A56T, E98D; p1: K4R; p17: A54T, I60L, K76R, F79Y, T81L, V82I, I104L, E106G, E107A, -124N, -125N, -126S, -127K; p24: L6M, V27I, V86A, H87Q, I91H, A92P, M96I, S120N, V124I, S210T; p6: -33R, -34E, -35A, K42R; p7: G8N, K10R, R11K, I12T, V13I; pro: S12T, P63T, K70R; rev: R14K, V16I, S67P, Q74P, Q95H, S103P, S112P; tat: N7R, N12K, T19K, S23N, W32L, L36V, L39M, K53R, S62N, K71E, S75P, P81Q, P84S; vif: V7A, M8L, F39S, E45D, H48N, L59V, V65I, L91W, R92E, I98L, D101G, Y111H, R132S, K158Q, I159R, K167T, K179R, R181K, N186S, N190S; vpr: F15Y, E25D, I60L, L68I, V70I, I84T, P85R, G86Q, G89A; vpu: V10A, I13V, A27L, V43I, R47S"}}, "children": [{"name": "KU820829", "node_attrs": {"div": 0.24375999999999998, "accession": "KU820829", "clade_membership": {"value": "other"}, "country": {"value": "MM"}, "date": {"value": 2013.0}, "Strain_name": {"value": "mSSDU151"}, "LANL_subtype": {"value": "CRF83_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G394A", "A579C", "G651A", "C662T", "G690A", "C719T", "C830T", "A1112T", "C1446A", "G1543A", "A1622G", "A1670G", "G1673C", "A1694G", "C1714T", "G1845A", "C1914T", "G1918A", "G2413A", "G2518A", "C2596T", "A2715G", "T3052C", "C3140T", "G3226T", "A3400G", "C3508T", "T3550G", "A3565G", "T3793G", "G3808T", "G3859A", "A4297G", "G4335A", "A4336G", "C4396T", "A4495G", "A4768C", "T4776C", "G4816A", "A4850G", "G4932A", "T5003C", "A5065G", "A5240G", "G5246A", "A5282C", "T5313C", "G5412A", "G5501C", "A5655C", "C5658T", "G5670T", "C5763T", "A5848G", "C5869A", "G5907A", "T5971C", "C5980A", "T6160C", "A6164-", "C6165-", "T6166-", "A6168-", "T6170-", "T6171-", "A6173G", "A6174G", "C6175G", "-6180T", "T6184A", "C6185T", "C6196A", "-6198C", "-6199T", "A6201G", "-6202G", "-6205G", "A6211G", "-6213C", "A6215T", "-6217A", "A6218T", "A6220G", "A6221G", "-6222A", "G6224A", "-6225T", "-6226A", "A6232G", "A6303G", "T6325A", "T6340G", "T6369C", "A6375G", "T6412C", "T6421C", "A6443C", "T6460G", "A6462G", "G6463C", "C6482T", "G6526A", "G6572A", "G6577A", "G6588A", "C6719A", "A6785T", "G6802A", "C6826A", "A6830G", "A6845G", "C6860T", "A6926G", "A6947T", "T6952A", "T6953G", "-6962T", "A6963G", "-6967A", "-6969G", "-6985A", "A6989G", "-6991G", "-6995A", "-6996C", "-6997G", "-6999G", "-7001G", "-7002A", "-7003G", "-7004G", "-7005A", "-7008T", "T7090A", "A7158G", "T7159C", "A7163-", "G7256A", "C7264T", "G7295C", "T7622A", "C7678T", "A7702T", "A7861C", "A7947G", "G7992A", "G8055A", "C8065T", "G8173A", "T8223C", "A8239G", "G8242A", "G8254A", "C8287A"], "INT": ["D6E", "E11D", "R187K"], "RT-p51": ["E207G"], "RT-p66": ["E207G"], "gp120": ["D5K", "R18K", "P57L", "T104G", "-109V", "-111S", "I126M", "K127R", "K150R", "D162K", "V172A", "K174R", "I197L", "D202E", "K203S", "P210S", "R245K", "V281-", "G284-", "P285-", "G286-", "Q287-", "L289-", "Y290-", "G293-", "D294-", "N311Y", "H324Q", "I331V", "P336S", "N358D", "-365C", "-367G", "-368N", "-369C", "-370T", "-371G", "N379E", "-380T", "N383E", "N384D", "T385I", "S412R", "N435T", "V468I", "E481Q"], "gp41": ["S107T", "E215G", "S251N"], "nef": ["N55Y", "R59K"], "p17": ["R20Q", "M31I", "I82L", "G106K", "A119T"], "p2": ["-11N"], "p6": ["A12V"], "p7": ["R26K"], "pro": ["G16E", "P39L"], "rev": ["L73F", "V109I"], "tat": ["G42A", "N80D"], "vif": ["K36N", "E61A", "R77K", "A116T", "R159K", "K160R"], "vpr": ["I46V", "E48N", "I70T"], "vpu": ["N81D"]}, "labels": {"aa": "INT: D6E, E11D, R187K; RT-p51: E207G; RT-p66: E207G; gp120: D5K, R18K, P57L, T104G, -109V, -111S, I126M, K127R, K150R, D162K, V172A, K174R, I197L, D202E, K203S, P210S, R245K, V281-, G284-, P285-, G286-, Q287-, L289-, Y290-, G293-, D294-, N311Y, H324Q, I331V, P336S, N358D, -365C, -367G, -368N, -369C, -370T, -371G, N379E, -380T, N383E, N384D, T385I, S412R, N435T, V468I, E481Q; gp41: S107T, E215G, S251N; nef: N55Y, R59K; p17: R20Q, M31I, I82L, G106K, A119T; p2: -11N; p6: A12V; p7: R26K; pro: G16E, P39L; rev: L73F, V109I; tat: G42A, N80D; vif: K36N, E61A, R77K, A116T, R159K, K160R; vpr: I46V, E48N, I70T; vpu: N81D"}}}, {"name": "KU820823", "node_attrs": {"div": 0.24402, "accession": "KU820823", "clade_membership": {"value": "other"}, "country": {"value": "MM"}, "date": {"value": 2013.0}, "Strain_name": {"value": "mSSDU109"}, "LANL_subtype": {"value": "CRF83_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A428G", "C496A", "C531T", "C576T", "C583T", "A652G", "C1002T", "C1187T", "A1240G", "C1342G", "A1370G", "A1404G", "A1486G", "A1840G", "C1849A", "A1903G", "C1979G", "T2449C", "T2581C", "G2837A", "A2839C", "G3094A", "A3097T", "T3331G", "T3368C", "A3385G", "T3551C", "A3622G", "G3896A", "C4141A", "T4198A", "G4677A", "T4694G", "A4787G", "T4840C", "A4863G", "G5060A", "A5062G", "T5237C", "C5248A", "C5250A", "A5284G", "A5302C", "T5475C", "C5559T", "A5623G", "A5698C", "C5866A", "G5954A", "A5955G", "C5964G", "T6024C", "G6029A", "T6034C", "A6050G", "A6159G", "-6167G", "-6169G", "-6172C", "G6179C", "-6180A", "T6181G", "C6186T", "C6187G", "A6191C", "A6192T", "A6194G", "A6197-", "-6202C", "A6203G", "-6205C", "A6212G", "-6213G", "-6217T", "A6219T", "-6222C", "-6225G", "-6226T", "G6234A", "T6242A", "A6276G", "A6288G", "A6324G", "T6331G", "T6337G", "A6338G", "A6489G", "T6562C", "G6566A", "A6573G", "G6605A", "C6669G", "C6752A", "A6779G", "A6809G", "A6810G", "T6925C", "A6937T", "G6948A", "C6951A", "A6955C", "-6956A", "-6957T", "-6958A", "-6962A", "C6964T", "-6967C", "-6969C", "-6970G", "-6971A", "-6972A", "-6973T", "-6980G", "-6981A", "-6982G", "-6983T", "-6984G", "-6985T", "-6991C", "C6994T", "G6998-", "T7000-", "C7006-", "A7007-", "T7009-", "T7107C", "A7160G", "-7164G", "-7165T", "C7170T", "G7269A", "G7366A", "C7429T", "C7684T", "A7688G", "C7999G", "C8005A", "G8006A", "G8008A", "A8011C", "G8050A", "T8097C", "G8133C", "C8156T", "C8220T", "A8222G", "A8228G", "G8264A", "A8309C", "C8323A", "A8353G", "T8371A", "G8373A", "T8374G", "C8390T", "A8446G", "T8505A", "A8518G", "G8522T", "G8590A"], "INT": ["D41N"], "RT-p51": ["E248N", "K334N"], "RT-p66": ["E248N", "K334N"], "gp120": ["D4E", "D34S", "A37G", "E59K", "N66D", "-105E", "-106L", "-107V", "-109D", "-111I", "N112G", "S130T", "K141R", "H145R", "E157G", "N159K", "N161K", "K212R", "A238T", "K240G", "D251N", "A272G", "I279M", "-280T", "-288V", "-292M", "Q300K", "K309E", "K319G", "G326R", "K361N", "T366-", "-380C", "T381I", "V418A", "-433N", "N434T", "S436D", "N437S", "T439I", "R472K"], "gp41": ["N129D", "D133E", "D230G", "D232E", "V235I", "L265S", "R277Q", "S306F", "T307V", "I309V", "A321T", "I336L", "F340L"], "nef": ["K4R", "I10K", "V11R", "Q35R", "G83E"], "p17": ["T54K", "P66S", "A83V"], "p2": ["-7T", "T8H", "N9S", "S10N"], "p24": ["H91Y", "K170R", "A204G", "S225G"], "p7": ["K7R"], "pro": ["Q61E"], "rev": ["A15V", "Q51E", "R53N", "A54T", "I55L", "A68T", "P103L"], "vif": ["V31I", "V85A", "R93G"], "vpr": ["Y45H", "T49N", "L60M", "Q66H"], "vpu": ["I6V", "K31Q"]}, "labels": {"aa": "INT: D41N; RT-p51: E248N, K334N; RT-p66: E248N, K334N; gp120: D4E, D34S, A37G, E59K, N66D, -105E, -106L, -107V, -109D, -111I, N112G, S130T, K141R, H145R, E157G, N159K, N161K, K212R, A238T, K240G, D251N, A272G, I279M, -280T, -288V, -292M, Q300K, K309E, K319G, G326R, K361N, T366-, -380C, T381I, V418A, -433N, N434T, S436D, N437S, T439I, R472K; gp41: N129D, D133E, D230G, D232E, V235I, L265S, R277Q, S306F, T307V, I309V, A321T, I336L, F340L; nef: K4R, I10K, V11R, Q35R, G83E; p17: T54K, P66S, A83V; p2: -7T, T8H, N9S, S10N; p24: H91Y, K170R, A204G, S225G; p7: K7R; pro: Q61E; rev: A15V, Q51E, R53N, A54T, I55L, A68T, P103L; vif: V31I, V85A, R93G; vpr: Y45H, T49N, L60M, Q66H; vpu: I6V, K31Q"}}}]}, {"name": "other_NODE_0000013", "node_attrs": {"div": 0.19305999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T362A", "G378A", "C379A", "C393A", "C399A", 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"N9S", "S10-", "-12T"], "p24": ["T41S", "L83V", "I91V", "D128E"], "p6": ["-33K", "-34E", "-35A", "K42R"], "p7": ["R26K", "Q45L"], "rev": ["N7S", "R14K", "P31S", "R53S", "I55L", "C63Y", "S84G"], "tat": ["A21E", "N24K", "T77I", "G79R"], "vif": ["N22H", "R47Q", "T74I", "R92G", "K93E", "S95N", "I98V", "Q105K", "D117E", "D134E", "T155I", "P156S", "K160R", "M189T"], "vpr": ["N48H", "I84T"], "vpu": ["T2Q", "P3L", "S7I", "V10I", "Y30G"]}, "labels": {"aa": "INT: Q42K, I72V, M84I, G106A, V112I, K136N, D167E, R187K, I220L; RT-p51: K20R, K101Q, E122R, S162F, D177E, V179D, S191T, T200A, P313T, K366R, M377V, I382V, D404E, D432E, A435I; RT-p66: K20R, K101Q, E122R, S162F, D177E, V179D, S191T, T200A, P313T, K366R, M377V, I382V, D404E, D432E, A435I, K464S, V466I, C483Y, S491V, E492D, K527R, K550R; gp120: S1N, N5K, F57Y, N71G, N102H, -105T, T106A, I109L, -111K, -112I, -114S, -115S, -116D, -117P, -119I, -120G, -121N, -122I, -123T, -124E, K127R, M133V, Q142R, K143Q, Y145H, K150N, E157K, N158S, N159D, P210Q, L237V, E240G, A253V, S278G, -288T, E304Q, K312E, K334R, H346L, R351K, S360T, K361N, R391K, K412R, N414T, N432Q, -433G, T436E, N437T, D446N, M447I, K474R, R480K; gp41: M54L, V69I, Y108F, E109D, N129K, D133E, K147Q, D148E, N166K, L204V, R214K, E225G, R231S, A245I, T270I, T298I, L304F, A310T, V318I, A321L, A322W, Q323-, R324-, A325-, W326-, L330C, F340L; nef: S8G, I10-, V11-, G12-, W13-, P14-, A15-, I16-, R17-, V30-, G31-, A32-, V33-, S34-, Q35-, D36-, L37-, D38-, K39-, H40-, G41-, A42-, I43-, T44-, S46R, E53D, A54G, C55Y, A56V, E59R, E65D, E98D, H116N, Y120F, F121L, T138C, R151K, E158K, G159R, N162S, C169N, E174D, H177E, R178G, Q188A, L198Q, F202W; p17: R9T, K15A, H28K, M30R, S54A, K58Q, K62G, P66S, A67T, T72S, T81A, T84V, G91R, D93E, V94I, N109K, A119-, -123G, -124S, -125S, -126S, -127K; p2: -7A, T8N, N9S, S10-, -12T; p24: T41S, L83V, I91V, D128E; p6: -33K, -34E, -35A, K42R; p7: R26K, Q45L; rev: N7S, R14K, P31S, R53S, I55L, C63Y, S84G; tat: A21E, N24K, T77I, G79R; vif: N22H, R47Q, T74I, R92G, K93E, S95N, I98V, Q105K, D117E, D134E, T155I, P156S, K160R, M189T; vpr: N48H, I84T; vpu: T2Q, P3L, S7I, V10I, Y30G"}}}, {"name": "other_NODE_0000015", "node_attrs": {"div": 0.23840999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A215C", "-280G", "C281-", "-305T", "T435C", "T525C", "A540C", "T572C", "A604C", "G629A", "A666G", "G671A", "C684G", "A685G", "A701G", "A956T", "A1002C", "T1003C", "G1090C", "T1175C", "T1182C", "C1220T", "A1259G", "C1292T", "A1464C", "G1466T", "C1517T", "G1526A", "G1562A", "G1589A", "C1615A", "A1642G", "T1681C", "C1693T", "A1719-", "G1720-", "C1721-", "T1722-", "T1723-", "C1724-", "A1725-", "G1726-", "G1727-", "T1728-", "C1736-", "A1745C", "A1746-", "C1747-", "C1748-", "A1770-", "A1771-", "A1772-", "C1795T", "G1852A", "C1867T", "A2007G", "T2011C", "G2042A", "C2063A", "A2127G", "A2140G", "T2383C", "G2422A", "G2530A", "C2533T", "T2608C", "C2632A", "G2714C", "C2720T", "T2917C", "C2968A", "A2995G", "T3045C", "A3080C", "A3103G", "A3145G", "G3205T", "A3224T", "T3253C", "A3367G", "A3388G", "C3391T", "A3487G", "A3502T", "A3521C", "A3543G", "T3545A", "G3641A", "C3857T", "G3907A", "A4027G", "G4036A", "C4123T", "T4129G", "G4145A", "G4268A", "T4674C", "G4677A", "A4806C", "A4870G", "T4938G", "T4940G", "A5005G", "T5029G", "A5038G", "A5069G", "G5437C", "C5538A", "A5751G", "G5907A", "A5915G", "A5916T", "G5954A", "A5955G", "G5956T", "C5974T", "C6010T", "G6055A", "A6059G", "C6067A", "-6180T", "C6190T", "A6192C", "G6207C", "G6274A", "T6285C", "A6326G", "T6328A", "G6339A", "A6448C", "C6559T", "A6581G", "G6593A", "A6602T", "A6692C", "C6729T", "T6758C", "A6779G", "A6809G", "A6810G", "A6834-", "T6835-", "A6841G", "A6881G", "C6951-", "A6989G", "-6994C", "-6995A", "-7002A", "-7003T", "-7004G", "A7066G", "G7089A", "-7147G", "A7158C", "G7199A", "G7212A", "G7256A", "G7366A", "G7508C", "A7532C", "C7678T", "A7689G", "G7700A", "A7701G", "G7702C", "T7757C", "G7790A", "A7796T", "C7926T", "C7939G", "C7960A", "A7964G", "T7968C", "C7969A", "C8009A", "G8017C", "C8038T", "C8051A", "A8069C", "G8070T", "C8092A", "T8213C", "A8273G", "T8287A", "T8302C", "G8304C", "G8328T", "T8337A", "-8378C", "-8385G", "-8386C", "G8393A", "A8396G", "C8406A", "A8441G", "C8451T", "C8480T", "T8483C", "-8487C", "-8488C", "-8489A", "-8490G", "-8491C", "-8492T", "T8501G", "A8503C", "A8540G", "T8594A", "T8603C", "T8636A", "A8647G", "C8648G", "C8651T", "T8687C", "T8701A", "A8729G", "G8804A", "G8808C", "A8809T", "C8906A", "A8933G", "T8972-", "T8973-", "T8976-", "-8988T", "T9012C", "C9068T", "C9075-", "T9098C"], "INT": ["A124T", "V165I"], "RT-p51": ["K11R", "E207Q", "D291E", "V317A", "I329L", "E370D", "M377L"], "RT-p66": ["K11R", "E207Q", "D291E", "V317A", "I329L", "E370D", "M377L", "K476Q", "L484I", "E516K"], "gp120": ["R18K", "N21V", "E34S", "M67I", "K69E", "N71K", "E74D", "-105D", "-107I", "-112T", "-115T", "-116T", "-117G", "K127-", "R141H", "V144A", "N158E", "N160S", "S162N", "I243V", "E247K", "T250S", "-288A", "T292M", "Y302H", "K309E", "K319G", "I343V", "-368D", "-369N", "-384D", "N414K", "N435R", "D449N", "S453N", "V468I"], "gp41": ["V69L", "K77Q", "N129S", "D133S", "D163N", "T165S", "T208I", "H212Q", "R221G", "I222T", "S256L", "F263L", "R277S", "R324G", "R334T", "R342I", "L345Q"], "nef": ["N49P", "-50A", "-51T", "Y102W", "D156L", "M168V", "I194M"], "p1": ["K4R"], "p17": ["M31L", "K69Q", "Q90T", "S111V", "T122K"], "p24": ["E75D", "I91P", "S120A"], "p6": ["L1P", "P5L", "S14E", "F15-", "R16-", "F17-", "E20-", "E21-", "K31-", "D32-", "T39I"], "p7": ["T50N"], "pro": ["K70R", "V82I", "L89M"], "rev": ["S8N", "P31A", "K39R", "A54E", "E57Q", "S67P", "A68E", "Q74P", "H82N"], "tat": ["A21P", "P73S", "T77S", "P84Q", "S87Q"], "vif": ["Y30H", "V31I", "T74P", "S118A", "N140S", "L148W", "K151R"]}, "labels": {"aa": "INT: A124T, V165I; RT-p51: K11R, E207Q, D291E, V317A, I329L, E370D, M377L; RT-p66: K11R, E207Q, D291E, V317A, I329L, E370D, M377L, K476Q, L484I, E516K; gp120: R18K, N21V, E34S, M67I, K69E, N71K, E74D, -105D, -107I, -112T, -115T, -116T, -117G, K127-, R141H, V144A, N158E, N160S, S162N, I243V, E247K, T250S, -288A, T292M, Y302H, K309E, K319G, I343V, -368D, -369N, -384D, N414K, N435R, D449N, S453N, V468I; gp41: V69L, K77Q, N129S, D133S, D163N, T165S, T208I, H212Q, R221G, I222T, S256L, F263L, R277S, R324G, R334T, R342I, L345Q; nef: N49P, -50A, -51T, Y102W, D156L, M168V, I194M; p1: K4R; p17: M31L, K69Q, Q90T, S111V, T122K; p24: E75D, I91P, S120A; p6: L1P, P5L, S14E, F15-, R16-, F17-, E20-, E21-, K31-, D32-, T39I; p7: T50N; pro: K70R, V82I, L89M; rev: S8N, P31A, K39R, A54E, E57Q, S67P, A68E, Q74P, H82N; tat: A21P, P73S, T77S, P84Q, S87Q; vif: Y30H, V31I, T74P, S118A, N140S, L148W, K151R"}}, "children": [{"name": "KX673820", "node_attrs": {"div": 0.26224, "accession": "KX673820", "clade_membership": {"value": "other"}, "country": {"value": "MY"}, "date": {"value": 2014.0}, "Strain_name": {"value": "14MYNBB090"}, "LANL_subtype": {"value": "CRF77_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C218-", "C219-", "A220-", "G221-", "A222-", "G223-", "A224-", "A225-", "G226-", "T227-", "T228-", "C229-", "T230-", "C231-", "T232-", "C233-", "G234-", "A235-", "C236-", "G237-", "C238-", "A239-", "G240-", "G241-", "A242-", "C243-", "T244-", "C245-", "G246-", "G247-", "C248-", "T249-", "T250-", "G251-", "C252-", "T253-", "G254-", "A255-", "A256-", "G257-", "T258-", "G259-", "C260-", "A261-", "A278G", "G354A", "A387C", "G394A", "A461G", "G481A", "G518A", "A520G", "C537G", "A545G", "G554C", "A557G", "C558G", "G585A", "A620T", "A678G", "G686A", "G687C", "C688A", "G690A", "-691A", "-692A", "-693G", "-694C", "-695A", "-696C", "-697A", "-698G", "A699G", "G703C", "A704T", "-705G", "-706A", "-707C", "-708G", "-709G", "-710G", "-711A", "-712A", "A715-", "C902T", "T978G", "A1017C", "T1091C", "A1142G", "T1148C", "A1208G", "C1211T", "A1307G", "G1388A", "A1443C", "A1449-", "G1450-", "T1451-", "-1455G", "-1456G", "-1457T", "C1535T", "G1543A", "G1640A", "A1644C", "T1676C", "C1681A", "G1752A", "G1760A", "-1769C", "C1789-", "T1792C", "C1849T", "A1903C", "A1963G", "T2017A", "T2035C", "T2077C", "A2275C", "C2296T", "G2363A", "A2473G", "C2694T", "C2749T", "T2779G", "T2845C", "C2960T", "A3043G", "A3535G", "T3566C", "A3571G", "G3631A", "G3808A", "A3814G", "C4072T", "A4076G", "C4146A", "A4183G", "G4354A", "A4407G", "T4412C", "C4471A", "G4553A", "T4712C", "A4736G", "A4811G", "A4814G", "A4900G", "C4925A", "C4937A", "A4951G", "C4988T", "A5134T", "C5162A", "C5171T", "T5391C", "G5412C", "T5415C", "T5442C", "T5515C", "C5579T", "T5582C", "A5583G", "A5601-", "A5603-", "T5604-", "G5619A", "T5695C", "A5696T", "A5704T", "A5781G", "G5808T", "C5869A", "T5953C", "G5955T", "A5983G", "A5999C", "A6030G", "A6066G", "T6172G", "T6181G", "A6182G", "T6184C", "A6188G", "A6194T", "C6195T", "C6196T", "-6198C", "T6199C", "C6202T", "-6203A", "-6204A", "-6205C", "A6212G", "A6219T", "-6226T", "-6229C", "A6230G", "T6241C", "G6277T", "T6312C", "G6314A", "A6333G", "G6336A", "T6337G", "A6362G", "T6385C", "T6446C", "G6547A", "A6587C", "T6592A", "C6599A", "G6605A", "C6612T", "A6616T", "C6678T", "G6693A", "A6695C", "A6715T", "T6722C", "A6728C", "G6731A", "T6738C", "A6751G", "A6753G", "A6764G", "A6780T", "A6788G", "A6806G", "C6807T", "A6819G", "T6838C", "A6848G", "T6904C", "-6951G", "-6956A", "-6957T", "-6958A", "-6959A", "-6960A", "-6961T", "-6962A", "-6963A", "-6964A", "-6965A", "-6966C", "-6967C", "-6968A", "-6969T", "-6970G", "-6971A", "-6972G", "-6973T", "-6986A", "-6987A", "-6988T", "-6996G", "A6997C", "A6999G", "-7001G", "C7012A", "A7088G", "A7095G", "A7155G", "T7156G", "A7163-", "A7175C", "C7250T", "T7328C", "T7466C", "A7646C", "T7656C", "A7683T", "C7692T", "A7721G", "G7726A", "G7773A", "A7880G", "G7885A", "T7930C", "A7935T", "A7989G", "A8032T", "T8038G", "G8045A", "C8048T", "T8155C", "G8159T", "G8231A", "C8238G", "T8265C", "C8296T", "C8382T", "G8407A", "A8459G", "C8514G", "G8520A", "A8522T", "A8531C", "A8564G", "A8573G", "A8739G", "T8756C", "A8762G", "G8864T", "C8903A", "A8922C", "C8934T", "T8947G", "T8948G", "G8994-", "-9075T"], "INT": ["I101V", "T124N", "K211R", "D232E", "V260I"], "RT-p51": ["V90I", "T200I"], "RT-p66": ["V90I", "T200I", "S491P"], "gp120": ["N5K", "S34I", "T49P", "E59G", "K71R", "T106K", "I109V", "T110A", "-111N", "-114N", "T116I", "E125-", "I126-", "I153T", "V154I", "N161K", "T170A", "L249I", "D251N", "A253V", "K254N", "T275I", "I281L", "Q287H", "Y290H", "M292L", "G293R", "E294G", "K300R", "E309V", "K312E", "T318V", "K322R", "I332V", "T366S", "D368E", "-370K", "-371T", "-372M", "-373S", "-378N", "-379D", "-380T", "-381S", "-382G", "-383D", "K412E", "K414R"], "gp41": ["F9L", "E109D", "M115L", "I118T", "Y127F", "T130I", "N140D", "S157N", "I193V", "H211L", "Q229R", "D248N", "G286W", "A310T", "A312G"], "nef": ["P14S", "R22K", "E24A", "L58V", "A60T", "E63D", "I133V", "E174D", "S187R", "M194L", "F202W"], "p1": ["I5L"], "p17": ["V7I", "K18Q", "R20K", "G49D", "M61I", "K62R", "L68V", "E73D", "L75V", "T115A", "-120D", "-121G"], "p2": ["T8N", "N9G", "S10A"], "p24": ["L83V", "M96L"], "p6": ["P1H", "A25T", "-31S", "-32I", "L38-", "I39-"], "p7": ["R26K"], "pro": ["E35D"], "rev": ["Y23R", "F28L", "T62S", "L64V", "R66Q", "P67L", "S84G", "S103P", "G104V"], "tat": ["Y47H", "P68L", "I69T", "L74P", "I76F"], "vif": ["Q105R", "D113E", "D117E", "K122R", "H183L", "H192Q"], "vpr": ["L20I", "S96P"], "vpu": ["Y30L", "I33L"]}, "labels": {"aa": "INT: I101V, T124N, K211R, D232E, V260I; RT-p51: V90I, T200I; RT-p66: V90I, T200I, S491P; gp120: N5K, S34I, T49P, E59G, K71R, T106K, I109V, T110A, -111N, -114N, T116I, E125-, I126-, I153T, V154I, N161K, T170A, L249I, D251N, A253V, K254N, T275I, I281L, Q287H, Y290H, M292L, G293R, E294G, K300R, E309V, K312E, T318V, K322R, I332V, T366S, D368E, -370K, -371T, -372M, -373S, -378N, -379D, -380T, -381S, -382G, -383D, K412E, K414R; gp41: F9L, E109D, M115L, I118T, Y127F, T130I, N140D, S157N, I193V, H211L, Q229R, D248N, G286W, A310T, A312G; nef: P14S, R22K, E24A, L58V, A60T, E63D, I133V, E174D, S187R, M194L, F202W; p1: I5L; p17: V7I, K18Q, R20K, G49D, M61I, K62R, L68V, E73D, L75V, T115A, -120D, -121G; p2: T8N, N9G, S10A; p24: L83V, M96L; p6: P1H, A25T, -31S, -32I, L38-, I39-; p7: R26K; pro: E35D; rev: Y23R, F28L, T62S, L64V, R66Q, P67L, S84G, S103P, G104V; tat: Y47H, P68L, I69T, L74P, I76F; vif: Q105R, D113E, D117E, K122R, H183L, H192Q; vpr: L20I, S96P; vpu: Y30L, I33L"}}}, {"name": "KX673818", "node_attrs": {"div": 0.25788, "accession": "KX673818", "clade_membership": {"value": "other"}, "country": {"value": "MY"}, "date": {"value": 2013.0}, "Strain_name": {"value": "13MYNBB108"}, "LANL_subtype": {"value": "CRF77_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G365C", "G367A", "A386G", "C435A", "C482T", "A491G", "G498C", "A500C", "C528A", "A530C", "A562G", "T571A", "C586T", "A689T", "A730T", "C749T", "A932G", "C947T", "G959A", "T1064G", "A1127G", "T1172C", "C1211A", "C1229T", "T1280C", "C1406T", "A1463C", "T1505A", "A1657T", "T1682C", "C1767-", "C1768-", "-1788C", "-1790T", "C2047T", "G2134A", "C2202A", "A2233G", "C2281T", "A2286G", "T2302C", "A2395G", "T2456G", "G2462A", "C2511T", "A2512G", "A2592G", "T2737C", "A2794G", "A2809G", "A3079G", "C3133T", "G3142A", "A3160G", "T3359C", "A3478G", "G3484A", "G3553A", "A3671G", "A3674C", "A3816G", "C3850T", "C4079T", "G4156A", "G4244A", "C4288T", "C4421A", "A4423C", "A4725C", "G4726A", "A4865C", "C4871T", "A5057G", "A5159G", "G5167A", "G5170A", "G5179A", "A5210C", "C5478T", "A5545C", "G5563A", "G5589C", "A5594G", "-5602T", "T5636C", "G5643A", "A5655G", "C5707T", "A5719G", "C5727T", "G5730A", "A5784G", "G5791A", "A5817T", "G5858A", "A5957G", "G5965A", "C5980T", "A6132C", "C6148T", "A6171C", "A6177C", "C6183A", "A6186T", "T6187C", "A6191G", "C6192T", "-6198A", "A6200G", "A6201G", "-6203G", "-6204T", "-6205G", "A6208C", "A6209C", "A6211G", "G6213A", "A6215T", "T6217G", "C6222T", "G6224T", "-6226A", "G6227C", "-6229G", "T6242A", "T6244G", "G6267A", "A6276T", "G6284A", "A6303G", "A6324T", "A6329G", "A6333C", "C6448T", "A6730G", "A6734G", "T6735A", "A6797G", "C6807A", "T6808G", "A6854G", "A6855C", "C6861A", "A6935C", "A6936G", "A6947-", "G6948-", "T6949-", "A6950-", "T6952-", "T6953-", "G6954-", "G6955-", "C6991A", "-6996T", "-7001A", "A7148C", "A7149C", "A7154G", "C7158T", "T7159G", "A7161C", "-7164A", "-7165T", "C7174T", "A7197G", "A7249G", "G7269A", "G7276A", "G7453T", "G7456A", "G7534A", "T7575C", "T7630G", "A7688G", "A7791G", "T7801A", "A7837G", "A7861C", "G8042A", "G8055A", "G8098A", "T8172C", "G8173A", "A8233G", "A8288G", "A8295T", "A8297G", "C8413A", "G8528A", "G8562A", "T8563C", "G8666C", "C8705T", "T8740C", "C8751T", "C8873T", "T8887A", "A8892G", "C8903T", "A8906G", "C8915T", "C9017T"], "INT": ["K14R", "E157K", "Q216N"], "RT-p51": ["A36E", "K64R", "D123N", "T139M", "K166R"], "RT-p66": ["A36E", "K64R", "D123N", "T139M", "K166R", "I526V", "K527Q"], "gp120": ["A2T", "T35A", "K93T", "-111V", "-114G", "-127D", "S130T", "R138K", "H141L", "A144T", "K150R", "E157V", "N159D", "S160T", "N161S", "L198F", "H280R", "E304K", "K315E", "T318K", "K334A", "P336H", "K361R", "S365E", "W367I", "N432P", "-433N", "N434D", "R435M", "K448R", "R472K"], "gp41": ["I91T", "N163S", "N166K", "D247N", "S251N", "L290S", "A321V", "I329V", "H331L", "I332V"], "nef": ["V74T", "E108D", "I133T", "M182K", "K184E"], "p1": ["H9L"], "p17": ["G11E", "L34I", "E55H", "Q65N", "K76R", "F79Y", "T84V", "Q117G", "Y132F"], "p2": ["-11A"], "rev": ["E10D", "S25T", "G65E", "V109I"], "tat": ["N12K", "E63K", "K71N"], "vif": ["R47Q", "K93N"], "vpr": ["T19A"], "vpu": ["V10A", "K38E", "D62N", "E70D"]}, "labels": {"aa": "INT: K14R, E157K, Q216N; RT-p51: A36E, K64R, D123N, T139M, K166R; RT-p66: A36E, K64R, D123N, T139M, K166R, I526V, K527Q; gp120: A2T, T35A, K93T, -111V, -114G, -127D, S130T, R138K, H141L, A144T, K150R, E157V, N159D, S160T, N161S, L198F, H280R, E304K, K315E, T318K, K334A, P336H, K361R, S365E, W367I, N432P, -433N, N434D, R435M, K448R, R472K; gp41: I91T, N163S, N166K, D247N, S251N, L290S, A321V, I329V, H331L, I332V; nef: V74T, E108D, I133T, M182K, K184E; p1: H9L; p17: G11E, L34I, E55H, Q65N, K76R, F79Y, T84V, Q117G, Y132F; p2: -11A; rev: E10D, S25T, G65E, V109I; tat: N12K, E63K, K71N; vif: R47Q, K93N; vpr: T19A; vpu: V10A, K38E, D62N, E70D"}}}]}]}, {"name": "other_NODE_0000016", "node_attrs": {"div": 0.20315999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G214A", "A216G", "-217A", "T227A", "G354A", "A491G", "G585A", "C587T", "-691A", "G1476A", "A3151G", "G3409A", "A3532G", "A3607G", "C4534T", "A4549G", "A4561G", "A4564G", "G4573A", "G4581A", "C5095T", "A5357G", "G5361C", "G5362A", "G5371C", "G5375A", "T5451C", "G5472T", "A5534G", "A5548G", "A6201-", "A6208-", "A6216-", "A6218-", "T6545C", "A6818G", "-6833C", "G6954A", "G6955C", "-6957T", "-6959A", "G7106A", "-7164C", "-7165A", "A7640G", "A7703T", "A7947G", "C7984A", "G8019A", "G8098A", "G8110A", "A8111G", "C8112T", "T8113G", "G8145C", "C8149T", "T8171C", "T8172A", "C8196A", "T8197G", "T8207A", "C8208G", "G8219A", "T8221C", "A8239T", "G8241A", "G8242A", "T8243G", "G8245A", "G8255A", "C8268T", "G8281T", "T8290C", "T8292G", "C8311A", "-8385A", "C8413A", "A8426T", "A8429G", "A8432G", "A8453G", "T8456A", "-8487G", "-8488C", "-8489A", "-8490G", "-8491C", "T8585C", "-8988T", "C9017T", "G9132A", "A9134T"], "INT": ["K136Q", "R269K", "D278A"], "gp120": ["N113-", "I180V", "W367Y", "T385-", "V418I"], "gp41": ["N113D", "I134L", "H211P", "H212N", "E215G", "E220G", "S239N", "T270V", "G281A", "L289V", "L290Q", "T298K", "A306T", "G313E", "W314G", "V318I", "W326C", "H331N"], "nef": ["E28D", "D38E", "N49A", "-50A", "-51T", "I194R"], "p17": ["V7I", "M31L", "Q90K", "T122-"], "p7": ["G4S"], "rev": ["L83I", "D88S", "R99S", "Q101*", "E105K", "S107C", "V108A", "N116K"], "tat": ["L36V", "K53R", "T58A", "N80D"], "vif": ["M8L", "T170V"], "vpr": ["G86Q"]}, "labels": {"aa": "INT: K136Q, R269K, D278A; gp120: N113-, I180V, W367Y, T385-, V418I; gp41: N113D, I134L, H211P, H212N, E215G, E220G, S239N, T270V, G281A, L289V, L290Q, T298K, A306T, G313E, W314G, V318I, W326C, H331N; nef: E28D, D38E, N49A, -50A, -51T, I194R; p17: V7I, M31L, Q90K, T122-; p7: G4S; rev: L83I, D88S, R99S, Q101*, E105K, S107C, V108A, N116K; tat: L36V, K53R, T58A, N80D; vif: M8L, T170V; vpr: G86Q"}}, "children": [{"name": "other_NODE_0000017", "node_attrs": {"div": 0.22430999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A521C", "A604C", "A617G", "A692G", "A699-", "C700-", "G818A", "A920G", "G935A", "T1175C", "T1182C", "T1362A", "C1491T", "T1628C", "C1679T", "C1714A", "A1715G", "-1729T", "-1730T", "-1731G", "-1732G", "-1733G", "-1734G", "-1735A", "C1736A", "C1748T", "G1752T", "C1756A", "G1757A", "A1766G", "G1769A", "A1771T", "C1789-", "T1791-", "T1792-", "A1793-", "G1819A", "T1832A", "A1840G", "G1841A", "C1849G", "G1852A", "A1853T", "A1858G", "G1861A", "C1867A", "A1903C", "A1906G", "A1942G", "A1972G", "T1978A", "A1981G", "T1987C", "T1996C", "A2003C", "A2005T", "C2083T", "C2107T", "T2129C", "G2177A", "A2189G", "T2263C", "G2293A", "G2392A", "A2419G", "G2539A", "C2575T", "A2677G", "C2720T", "A2838T", "A2840C", "G2842A", "G2869A", "C2908T", "A2911T", "T3049C", "A3107T", "C3121T", "G3142A", "G3196A", "G3264A", "T3266C", "A3283G", "A3535C", "A3543G", "T3545C", "A3973C", "G4178C", "T4606C", "C4679T", "A4682C", "A4684G", "A4721G", "G4769A", "T4832A", "C4841T", "A4878C", "A4888G", "G5082A", "C5248A", "T5251A", "T5281C", "G5296A", "A5336G", "A5355T", "C5358A", "C5359G", "G5370A", "C5372A", "C5397T", "C5398T", "C5406T", "C5432A", "A5433G", "G5444C", "C5454T", "A5463G", "T5466C", "G5471T", "C5487T", "T5490C", "C5491A", "G5493A", "C5513T", "G5532A", "C5538A", "A5613C", "A5915G", "T6172G", "A6185T", "A6191C", "-6195A", "-6202A", "-6216T", "-6217A", "-6222A", "-6225A", "-6226T", "-6229A", "T6263C", "G6345T", "T6427C", "G6693C", "T6694C", "C6717T", "C6752A", "A6849C", "G6948A", "-6958A", "-6960G", "-6991A", "-6994T", "-7001A", "-7002A", "-7003T", "-7004G", "-7005G", "C7024T", "G7033A", "A7148-", "A7149-", "T7156C", "A7160G", "G7198A", "G7534A", "T7921G", "C7929T", "G8055A", "C8092T", "A8093G", "C8095A", "G8102A", "C8168G", "T8176C", "A8188G", "C8232T", "T8265C", "G8276C", "C8277T", "C8291T", "C8294A", "A8327G", "G8328C", "T8337A", "-8492C", "C8510A", "C8514T", "A8540G", "T8701A", "A8744G", "A8750G", "A8762G", "G8804A", "G8805A", "C8906A", "T8923G", "T8972-", "T8973-", "T8976-"], "INT": ["I135L"], "RT-p51": ["E28K", "K32E", "E248V", "K249Q", "T338S", "R390K"], "RT-p66": ["E28K", "K32E", "E248V", "K249Q", "T338S", "R390K", "Q480H"], "gp120": ["N21D", "-106A", "-109I", "K127R", "R164I", "Q300K", "K322E", "H324Q", "K332T", "S365-", "-433N", "N435-", "T436-"], "gp41": ["F206L", "P209L", "T210I", "D230G", "S251N", "I264V"], "nef": ["Y81F", "E155K", "M168V"], "p17": ["K62N", "S111I", "A119K"], "p24": ["M68I", "L211I"], "p6": ["A12E", "-18G", "-19E", "E21I", "A25S", "P26Q", "K31I", "D32-", "L38-", "S47N"], "p7": ["P9S"], "pro": ["S12T", "V15I", "I19L", "E35D", "I36M", "D60E", "K69H"], "rev": ["G6E", "S8N", "H82C", "C89G"], "tat": ["N12K", "T19K", "S23T", "W32F", "L39I", "S46F"], "vif": ["V7A", "K17R", "K33R", "S95T", "I98L", "D101G", "V166I", "T188S"], "vpr": ["I84L", "P85R", "G89T"], "vpu": ["N73D"]}, "labels": {"aa": "INT: I135L; RT-p51: E28K, K32E, E248V, K249Q, T338S, R390K; RT-p66: E28K, K32E, E248V, K249Q, T338S, R390K, Q480H; gp120: N21D, -106A, -109I, K127R, R164I, Q300K, K322E, H324Q, K332T, S365-, -433N, N435-, T436-; gp41: F206L, P209L, T210I, D230G, S251N, I264V; nef: Y81F, E155K, M168V; p17: K62N, S111I, A119K; p24: M68I, L211I; p6: A12E, -18G, -19E, E21I, A25S, P26Q, K31I, D32-, L38-, S47N; p7: P9S; pro: S12T, V15I, I19L, E35D, I36M, D60E, K69H; rev: G6E, S8N, H82C, C89G; tat: N12K, T19K, S23T, W32F, L39I, S46F; vif: V7A, K17R, K33R, S95T, I98L, D101G, V166I, T188S; vpr: I84L, P85R, G89T; vpu: N73D"}}, "children": [{"name": "KY201177", "node_attrs": {"div": 0.24991, "accession": "KY201177", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "GD698"}, "LANL_subtype": {"value": "CRF117_0107"}}, "branch_attrs": {"mutations": {"nuc": ["T435C", "A551G", "T589C", "G629A", "A730T", "C749G", "G762A", "A833G", "A1002G", "G1067A", "G1090C", "T1103C", "C1118A", "C1440A", "C1490T", "G1589A", "C1680G", "G1685A", "G1727T", "C1741T", "A1746G", "A1982G", "A1988G", "G2518A", "C2694T", "G2714C", "A2727G", "A2755G", "A2794G", "C2823T", "T2917A", "C2942A", "G3004A", "C3032A", "A3043G", "G3070A", "G3168A", "G3398A", "T3541C", "A3661T", "T3778C", "A3802G", "G3817A", "A4255G", "A4306G", "A4384C", "C4396T", "T4435C", "G4459A", "T4585C", "T4694G", "T4730G", "T4772G", "G4799A", "T4886C", "C4889T", "C4890A", "C4943T", "A5050G", "A5057G", "T5078C", "A5159G", "G5225A", "C5239T", "G5312A", "C5351T", "G5382A", "A5494C", "A5495G", "A5537C", "A5581G", "-5602T", "C5612G", "C5615T", "A5655G", "T5679C", "A5712G", "C5713G", "A5718G", "G5775C", "A5784G", "G5791-", "A5792-", "T5793-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "C5801A", "C5802T", "A5803G", "A5805G", "C5806T", "-5809G", "-5810C", "-5811T", "A5817T", "T5827C", "C5834A", "T5835C", "G5858A", "G5907A", "T5917A", "C5924T", "A5935T", "A5955T", "C5974T", "T6024A", "C6025T", "A6045T", "C6052-", "A6053-", "T6054-", "G6085T", "A6131C", "T6134C", "A6176C", "T6178G", "-6180C", "C6183A", "A6186T", "T6187G", "T6193G", "A6194G", "C6196A", "-6198A", "-6199T", "-6201G", "-6203C", "-6204A", "-6205G", "G6207T", "-6208G", "-6211G", "A6212T", "-6213A", "-6218T", "A6220G", "A6221G", "T6261A", "C6263A", "G6283T", "T6285C", "G6323A", "T6325C", "A6327G", "A6329G", "T6337A", "A6344G", "T6347C", "G6391A", "A6392G", "T6412C", "T6446C", "A6448C", "T6487C", "G6526A", "C6559T", "A6595G", "C6599T", "G6605A", "C6607T", "G6647C", "T6668G", "A6684C", "A6751G", "A6780G", "A6785T", "A6791G", "C6792T", "G6802A", "C6807A", "T6808G", "A6809G", "A6811T", "A6813C", "A6819G", "G6821A", "C6826A", "T6827G", "-6830G", "-6831G", "-6832A", "A6836G", "T6838G", "A6841T", "A6842-", "C6843-", "A6844-", "C6858A", "A6877G", "T6932A", "C6933G", "A6934C", "A6935C", "A6947G", "A6950T", "-6956A", "-6985A", "-6986A", "-6987A", "-6988T", "G6998T", "A6999G", "C7045A", "G7054A", "G7090T", "A7095G", "A7096C", "A7106T", "T7144G", "G7145-", "G7146-", "T7150-", "A7151-", "A7152-", "T7153-", "C7156A", "C7170T", "C7201A", "G7291A", "G7319A", "G7508C", "G7513A", "G7519A", "A7542G", "T7575C", "C7605A", "A7620G", "A7641G", "C7642A", "C7684T", "A7688G", "G7702T", "T7703C", "A7711G", "G7726A", "C7732A", "G7734A", "A7742C", "A7756G", "T7774C", "T7801C", "A7846G", "T7876C", "A7964G", "G7997A", "A7998C", "G8008T", "C8038G", "C8047T", "G8136T", "G8161A", "A8163G", "G8208A", "T8210C", "A8236G", "T8268G", "T8278C", "G8283T", "G8292A", "A8360G", "A8409G", "A8516G", "C8669T", "A8739G", "C8791A", "A8793G", "A8809C", "G8864T", "G9006C", "C9028A"], "INT": ["M84I"], "RT-p51": ["T200I", "E207Q", "K211R", "P243L", "L283I", "P313T", "R358K", "A435T"], "RT-p66": ["T200I", "E207Q", "K211R", "P243L", "L283I", "P313T", "R358K", "A435T"], "gp120": ["A2T", "R18K", "D21E", "E34V", "F57Y", "N64I", "N66K", "M67-", "E74D", "Q77H", "K93Q", "-105S", "I109L", "-111Q", "-112A", "-113N", "-124D", "L137I", "K143N", "V144A", "N158S", "N159D", "N161R", "I164V", "L249F", "D251N", "E265Q", "S272A", "K277T", "-280T", "-288V", "E304K", "K309R", "N311Y", "T313V", "T318K", "K319D", "K320T", "E322G", "E323K", "F325V", "-326G", "N327H", "-328E", "K329N", "T330-", "P335Q", "K361Q", "T366-", "Y367-", "-384D", "-385T", "N397K", "N414S", "I418L", "G431K", "N433D", "N434T", "N437-", "T439I", "D449E"], "gp41": ["A6T", "V69L", "K80R", "I91T", "S101Y", "K106R", "D113G", "N129D", "D143E", "K147Q", "R221G", "D232T", "G278V", "N287S", "S302N", "A310V", "A322G", "A325L", "R327I", "L330Y", "R342A", "L345Q"], "nef": ["A15N", "T23A", "E98D", "I133V", "P150Q", "R151G", "D156A", "E174D"], "p17": ["L85P", "K90T", "Y132F"], "p2": ["Q6K", "-11A"], "p24": ["V11I", "I91V", "S120A"], "p6": ["L1V", "R16S", "T23A"], "pro": ["I62V", "I64V"], "rev": ["N8H", "K39R", "R50N", "A54S", "L64V", "T114A", "*117E"], "tat": ["K40R", "Q54P", "I69V"], "vif": ["H48Q", "L102M", "K155R"], "vpr": ["T19A", "G41S", "V70I", "A93T"], "vpu": ["T2S", "P3L", "Q36E", "E56D", "K66Q", "E70D", "F74L", "P76H"]}, "labels": {"aa": "INT: M84I; RT-p51: T200I, E207Q, K211R, P243L, L283I, P313T, R358K, A435T; RT-p66: T200I, E207Q, K211R, P243L, L283I, P313T, R358K, A435T; gp120: A2T, R18K, D21E, E34V, F57Y, N64I, N66K, M67-, E74D, Q77H, K93Q, -105S, I109L, -111Q, -112A, -113N, -124D, L137I, K143N, V144A, N158S, N159D, N161R, I164V, L249F, D251N, E265Q, S272A, K277T, -280T, -288V, E304K, K309R, N311Y, T313V, T318K, K319D, K320T, E322G, E323K, F325V, -326G, N327H, -328E, K329N, T330-, P335Q, K361Q, T366-, Y367-, -384D, -385T, N397K, N414S, I418L, G431K, N433D, N434T, N437-, T439I, D449E; gp41: A6T, V69L, K80R, I91T, S101Y, K106R, D113G, N129D, D143E, K147Q, R221G, D232T, G278V, N287S, S302N, A310V, A322G, A325L, R327I, L330Y, R342A, L345Q; nef: A15N, T23A, E98D, I133V, P150Q, R151G, D156A, E174D; p17: L85P, K90T, Y132F; p2: Q6K, -11A; p24: V11I, I91V, S120A; p6: L1V, R16S, T23A; pro: I62V, I64V; rev: N8H, K39R, R50N, A54S, L64V, T114A, *117E; tat: K40R, Q54P, I69V; vif: H48Q, L102M, K155R; vpr: T19A, G41S, V70I, A93T; vpu: T2S, P3L, Q36E, E56D, K66Q, E70D, F74L, P76H"}}}, {"name": "MK397789", "node_attrs": {"div": 0.25556999999999996, "accession": "MK397789", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2017.0}, "Strain_name": {"value": "17ZJ075"}, "LANL_subtype": {"value": "CRF117_0107"}}, "branch_attrs": {"mutations": {"nuc": ["A168-", "A169-", "A170-", "T172-", "C173-", "G181-", "T182-", "T200G", "T201C", "A224G", "A278G", "-280G", "A286G", "A302T", "-305A", "G365C", "A418G", "C419T", "T424G", "G463A", "A497G", "T571A", "T572C", "C618A", "G619T", "C635T", "T668C", "A678G", "A701-", "G702-", "G703-", "A704-", "-711A", "-712A", "-713G", "-714A", "A852T", "A1010G", "A1029-", "G1089A", "A1092-", "C1187-", "G1298A", "G1313A", "A1340G", "T1451G", "G1458A", "G1469A", "A1475T", "C1514T", "A1580G", "T1652C", "T1676C", "A1743G", "G1760A", "A1770G", "C1826A", "T1828G", "A2006C", "T2035A", "C2202A", "T2212G", "A2230G", "G2329A", "A2374G", "T2383C", "T2456C", "C2467T", "T2494C", "C2533T", "G2602A", "A2629G", "A2665G", "T2737C", "T2779G", "C2806T", "A2836G", "T3045C", "G3085A", "C3133T", "A3148G", "A3268G", "A3280G", "G3292A", "C3358T", "C3399T", "T3492C", "C3500T", "T3505G", "A3562C", "T3602C", "C3618T", "T3628C", "T3668C", "C3688T", "T3754C", "A3874G", "T3970C", "A4027G", "C4042T", "T4075C", "T4444C", "C4445T", "T4476G", "A4546C", "G4687A", "T4701G", "G4737A", "T4761G", "G4855T", "G4861A", "C4878T", "T4911A", "C4937A", "T5006C", "T5028C", "A5059G", "T5062C", "T5072C", "T5081C", "A5134G", "G5137A", "G5257A", "C5268A", "A5269G", "T5314G", "T5457C", "T5492C", "G5546C", "T5568C", "A5581C", "G5599T", "T5600-", "A5601-", "C5613T", "T5616C", "G5619A", "G5692C", "A5694G", "T5695G", "A5696C", "A5699G", "A5701G", "A5720G", "G5734A", "C5756A", "A5757G", "C5763T", "A5781G", "-5799G", "G5851T", "G5856A", "A5947G", "G5956T", "T5964C", "G5972A", "T6023C", "C6026A", "A6044T", "T6076G", "A6103G", "A6119C", "A6158C", "T6166C", "-6180T", "T6181A", "A6188G", "C6189T", "C6191T", "A6192C", "-6198T", "-6199A", "-6201C", "-6203G", "-6204G", "-6205A", "-6208T", "T6210C", "-6211T", "-6213T", "-6218G", "A6219G", "A6230G", "T6242A", "G6267A", "T6271C", "G6274A", "T6287C", "T6289G", "G6290T", "T6301C", "A6303G", "G6304A", "T6307A", "A6311C", "A6333G", "G6339A", "T6340G", "G6346A", "A6394G", "C6416T", "A6438T", "A6443C", "C6496T", "C6618T", "C6619T", "C6631T", "G6638A", "A6689G", "A6695T", "-6697T", "A6703-", "A6725C", "G6726A", "A6752G", "A6753C", "A6764G", "A6786G", "T6787G", "A6788G", "A6806G", "A6825G", "C6833A", "C6849T", "A6854C", "G6906A", "T6925C", "T6928C", "A6931T", "A6947T", "T6949C", "-6956C", "T6957A", "-6961T", "-6962G", "-6963G", "-6964A", "-6965A", "-6966C", "-6967C", "A6990T", "C6993A", "-6995G", "-6996G", "-6997G", "C7006A", "C7012T", "C7016A", "G7026A", "G7027A", "A7030C", "G7055A", "G7058A", "T7059C", "G7072A", "G7089A", "G7132A", "-7147T", "-7148G", "-7149T", "A7155G", "A7158C", "T7159A", "A7161T", "C7164A", "A7165T", "T7180G", "G7190A", "G7195A", "T7204C", "A7275G", "G7276A", "G7289C", "G7441A", "A7463C", "A7471G", "C7474A", "C7561A", "A7630G", "A7689G", "A7691C", "C7692A", "C7706A", "G7712C", "A7721G", "A7753G", "G7769A", "G7773A", "G7790A", "C7825T", "C7843T", "T7879C", "G7885A", "C7959T", "A8032G", "C8037T", "C8044G", "T8112G", "G8159-", "T8164G", "C8165T", "A8196G", "T8321C", "T8332G", "G8373A", "A8385G", "A8386C", "A8400T", "G8402A", "A8446G", "T8462C", "A8469G", "G8520A", "G8528A", "G8561A", "A8576C", "G8590C", "T8636A", "T8740C", "G8795T", "C8903G", "C8913A", "G8914A", "A8922T", "C8930T", "C9068T", "T9097C", "A9099G", "T9160A"], "INT": ["R224W", "I234S"], "RT-p51": ["A36E", "D39E", "Y121H", "I178M", "V317A", "A435V"], "RT-p66": ["A36E", "D39E", "Y121H", "I178M", "V317A", "A435V", "V466A"], "gp120": ["S1N", "E34D", "V37A", "V40I", "F57L", "L58M", "N64Y", "K89Q", "N102H", "-105Q", "-107N", "-111D", "I126V", "S130T", "E136V", "R138K", "Y145Q", "A146S", "K150R", "I153L", "N157G", "N161S", "V180M", "H188Y", "Y195F", "I197L", "T255I", "E262K", "I279-", "I281-", "G284-", "P285-", "G286-", "Q287-", "F289-", "Y290V", "R291T", "T292F", "D294P", "K300A", "N311R", "K312E", "T318A", "Q324R", "-328N", "T332I", "K334Q", "R351K", "-365Y", "-368Q", "-369S", "-370G", "-371T", "-372I", "-373N", "-376G", "-377D", "-378N", "-379G", "-380T", "L388I", "R391K", "G401R", "V402T", "M406I", "S412K", "N414K", "N432V", "N434S", "-435T", "-436V", "D446N", "M447I", "K474R", "E479Q"], "gp41": ["M54L", "N129S", "T130Q", "D133E", "L135I", "E137Q", "N140D", "K144R", "A156T", "S157N", "D163N", "P219L", "A245V", "D247E", "V270G", "G286-"], "nef": ["V11I", "M20L", "Q35R", "I43V", "A60T", "G83A", "I133T", "R151S", "S187R", "R191N", "R194W"], "p17": ["H28R", "M30R", "R43K", "F79Y", "R95I", "T115A", "-122K", "-123K"], "p2": ["-7T", "T8N", "N9R", "S10-", "-12T"], "p24": ["T41S", "R100-"], "p6": ["I21T", "T22A", "I31V", "L50W"], "p7": ["M1I", "R3S"], "pro": ["L10M", "K70Q"], "rev": ["E11Q", "I18T", "T62A", "R66G", "S67P", "S88R"], "tat": ["I39T", "R57T", "I69L", "P84S"], "vif": ["R34K", "K36N", "F39V", "V51I", "L59V", "R90I", "R92K", "L109M", "D117E", "K158R", "I159T", "H183R", "R184K"], "vpr": ["A55E"], "vpu": ["E29Q", "Y30A", "K31R", "K32E", "K38R", "V43I", "A50E", "V82L"]}, "labels": {"aa": "INT: R224W, I234S; RT-p51: A36E, D39E, Y121H, I178M, V317A, A435V; RT-p66: A36E, D39E, Y121H, I178M, V317A, A435V, V466A; gp120: S1N, E34D, V37A, V40I, F57L, L58M, N64Y, K89Q, N102H, -105Q, -107N, -111D, I126V, S130T, E136V, R138K, Y145Q, A146S, K150R, I153L, N157G, N161S, V180M, H188Y, Y195F, I197L, T255I, E262K, I279-, I281-, G284-, P285-, G286-, Q287-, F289-, Y290V, R291T, T292F, D294P, K300A, N311R, K312E, T318A, Q324R, -328N, T332I, K334Q, R351K, -365Y, -368Q, -369S, -370G, -371T, -372I, -373N, -376G, -377D, -378N, -379G, -380T, L388I, R391K, G401R, V402T, M406I, S412K, N414K, N432V, N434S, -435T, -436V, D446N, M447I, K474R, E479Q; gp41: M54L, N129S, T130Q, D133E, L135I, E137Q, N140D, K144R, A156T, S157N, D163N, P219L, A245V, D247E, V270G, G286-; nef: V11I, M20L, Q35R, I43V, A60T, G83A, I133T, R151S, S187R, R191N, R194W; p17: H28R, M30R, R43K, F79Y, R95I, T115A, -122K, -123K; p2: -7T, T8N, N9R, S10-, -12T; p24: T41S, R100-; p6: I21T, T22A, I31V, L50W; p7: M1I, R3S; pro: L10M, K70Q; rev: E11Q, I18T, T62A, R66G, S67P, S88R; tat: I39T, R57T, I69L, P84S; vif: R34K, K36N, F39V, V51I, L59V, R90I, R92K, L109M, D117E, K158R, I159T, H183R, R184K; vpr: A55E; vpu: E29Q, Y30A, K31R, K32E, K38R, V43I, A50E, V82L"}}}]}, {"name": "other_NODE_0000018", "node_attrs": {"div": 0.23295, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-162G", "-163T", "-164G", "-165T", "-166G", "-167G", "-171A", "-174T", "-175C", "-176T", "-177A", "-178G", "-179C", "-180A", "-305T", "T525C", "A540C", "A562G", "G629A", "A697C", "A701G", "A791G", "G809A", "A836G", "C897T", "C902T", "C944T", "G1019A", "A1142G", "A1253T", "T1409C", "G1619A", "C1646T", "A1664G", "T1682C", "A1740G", "A1742G", "-1773G", "-1774A", "-1775C", "-1776A", "-1777G", "-1778G", "-1779G", "-1780A", "-1781A", "-1788C", "-1790T", "A1804G", "G1918A", "A2008G", "T2087C", "A2473G", "A2579T", "C2632T", "A2693G", "A2951G", "A3027G", "C3232T", "A3364G", "C3391T", "G3442A", "A3667G", "C3779T", "A3816G", "G3886A", "G3988A", "T4585C", "G4636A", "A4685G", "C4870G", "T4967C", "C5091T", "G5114C", "C5125T", "A5134G", "T5148A", "G5179A", "A5236G", "G5312A", "T5448C", "A5463C", "A5603-", "A5611T", "G5734A", "A5790G", "C5866A", "T5917A", "C5944T", "C5951T", "C5968T", "C5980T", "A6022G", "C6025T", "C6026T", "A6065G", "A6073G", "G6074A", "T6115C", "A6136G", "T6139C", "T6142A", "C6148T", "T6151C", "T6166A", "T6170G", "C6174G", "A6188-", "A6192-", "A6194-", "C6196-", "A6197-", "A6200-", "A6206-", "A6209-", "T6210-", "A6212-", "A6220-", "A6221-", "A6223-", "G6224-", "G6234A", "C6238T", "T6241C", "T6247C", "T6252C", "G6253A", "G6283A", "C6286G", "A6303G", "G6304A", "A6320C", "A6326G", "G6346A", "T6364C", "T6369C", "T6373A", "A6375C", "G6376A", "G6379A", "T6382C", "A6392G", "A6394C", "C6397T", "T6446C", "G6458A", "A6465C", "T6466G", "G6481A", "A6490T", "C6496T", "T6500A", "C6511T", "C6559T", "T6562C", "C6586T", "C6601G", "C6619A", "G6628A", "C6631T", "C6652T", "T6655A", "C6661A", "T6668A", "C6669A", "C6673T", "T6694G", "G6716A", "A6725G", "G6726C", "T6745C", "G6766C", "A6771G", "C6777A", "A6778T", "C6800A", "C6807G", "A6819C", "G6823A", "T6829C", "A6834C", "A6855C", "T6874C", "T6888C", "G6889A", "C6893A", "A6894G", "T6895C", "G6910A", "A6935G", "A6936G", "A6937C", "T6952A", "-6958T", "-6960A", "-6961T", "-6962G", "-6963G", "-6964T", "-6965A", "-6966C", 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"K42R"], "rev": ["A54S", "T62A", "S106P"], "tat": ["S75P", "P84S"], "vif": ["K176N", "T180I", "H183R"], "vpr": ["F15H", "V70I"], "vpu": ["V43I"]}, "labels": {"aa": "INT: K14R; RT-p51: S162C, T200A, T286A, K311R; RT-p66: S162C, T200A, T286A, K311R; gp120: D4E, H33Y, N71D, E74N, M133T, K150R, I156L, V172A, K174T, D202N, N204T, K212N, S216T, E240G, S272N, -280R, -288T, R291A, E304N, N306S, G307A, T308N, K309N, Q316R, T318S, K322A, -326P, K334T, M345T, H347S, K361G, -369N, -371T, I387T, G401E, Q404R, S412A, N416T, I424L, T427V, -433T, N437T, K448R, Q462E, E464K, V468I, R472K; gp41: M7V, I8F, F9L, A67T, V72I, K80Q, F81L, L84I, I91L, T102S, Y108Q, I118M, E119Q, E121D, D133N, T136E, D143E, E151A, K154S, A156K, S157N, N160S, L265S, A322V, L330R; nef: A15N, T23A, D156A, R191H; p17: K69Q, K76R, A120E, D121A; p24: V27I, M96I; p6: -33R, -34E, -37P, K42R; rev: A54S, T62A, S106P; tat: S75P, P84S; vif: K176N, T180I, H183R; vpr: F15H, V70I; vpu: V43I"}}, "children": [{"name": "other_NODE_0000019", "node_attrs": {"div": 0.26754, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T506C", "T572C", "A603G", "G687C", "G690A", "T731C", "G743A", "T746C", "A752G", "G770A", "G810A", "T885C", "T992G", "A1002G", "A1025C", "A1109G", "C1174T", "C1178T", "A1190C", "T1359A", "G1458A", "A1476G", "A1486G", "A1487G", "G1488A", "G1489A", "C1492A", "T1493A", "A1495G", "G1498A", "A1499G", "A1500C", "T1501C", "T1505C", "A1508G", "C1517T", "G1526A", "G1543A", "-1735T", "C1741A", "A1839G", "A1988G", "A2029G", "T2080A", "T2086A", "A2127G", "A2221G", "T2383C", "A2403G", "G2422A", "C2467T", "G2530A", "C2533T", "C2575T", "C2644T", "G2686A", "G2704A", "A2707G", "C2708T", "G2710A", "G2725A", "A2734G", "G2869A", "A2977G", "C3023T", "A3031C", "G3250A", "C3307G", "T3346C", "C3376T", "C3380T", "G3382A", "T3391A", "C3399A", "A3427G", "A3449G", "G3463A", "G3473A", "G3477A", "G3484A", "A3485C", "T3496C", "T3497A", "T3499C", "A3508C", "A3529G", "G3532A", "T3542C", "T3544C", "A3556G", 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["Q35R", "F85L"], "p1": ["S8P"], "p17": ["K90E", "S111I"], "p2": ["-12T"], "p24": ["H87Q", "I91V", "E98D", "T148V", "S210T"], "p7": ["S4G", "K7R", "G8N", "P9Q", "K10R", "R11K", "I12S", "R26K"], "pro": ["K14R", "I64V"], "rev": ["D7S", "S8T", "R53D", "E57A", "A68P", "H82T", "I83L", "S84D", "D85C", "S86N", "S88D", "*101Q", "S103L", "K105E", "C107S", "A108T", "G111D", "K116E"], "tat": ["N12K", "Q17K", "N24K", "K29N", "V36L", "R53K", "Q54H", "S61C", "E63K", "K71E"], "vif": ["V31I", "R47S", "I87V", "R93K", "D101N", "P131S", "D134N", "V166I", "K167Q"], "vpr": ["A4S", "A55E", "F72Y", "I84T", "Q86G", "S94G"], "vpu": ["R47Q"]}, "labels": {"aa": "INT: A21T, I31V, Q42K, M84I, V112I, I135V; RT-p51: K11R, K103R, E312D, D404E, D432E, A435E; RT-p66: K11R, K103R, E312D, D404E, D432E, A435E, I452V, D460N, R461K, K464Q, S468T, E471D, C483H, S491L, N519S, R530K, S534A, V548I, S554A, K558R; gp120: N21K, T35K, I56M, F57V, L58M, -117T, -118D, -119T, -120E, -121M, -122R, E125-, I126-, E136V, R138K, K143S, N158E, N160K, T191A, E241D, N267K, K315Q, E323K, H324Y, P335S, R351G, -368N, -373N, -377S, -378N, L388I, N434T, T436N, K464R; gp41: I4L, E109K, N140S, K144R, F206L, P209L, R231K, V235I, N239H, F263L, I264L, V266I, T267V, A268T, V270I, L285W, V289L, G293I, K298N, I301V, D305N, A321V, N331R, R334T, F340L, A343S; nef: Q35R, F85L; p1: S8P; p17: K90E, S111I; p2: -12T; p24: H87Q, I91V, E98D, T148V, S210T; p7: S4G, K7R, G8N, P9Q, K10R, R11K, I12S, R26K; pro: K14R, I64V; rev: D7S, S8T, R53D, E57A, A68P, H82T, I83L, S84D, D85C, S86N, S88D, *101Q, S103L, K105E, C107S, A108T, G111D, K116E; tat: N12K, Q17K, N24K, K29N, V36L, R53K, Q54H, S61C, E63K, K71E; vif: V31I, R47S, I87V, R93K, D101N, P131S, D134N, V166I, K167Q; vpr: A4S, A55E, F72Y, I84T, Q86G, S94G; vpu: R47Q"}}, "children": [{"name": "KU820831", "node_attrs": {"div": 0.29297, "accession": "KU820831", "clade_membership": {"value": "other"}, "country": {"value": "MM"}, "date": {"value": 2013.0}, "Strain_name": {"value": "mSSDU160"}, "LANL_subtype": {"value": "CRF82_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A418G", "A492T", "T517C", "G518A", "A520G", "T571A", "A585G", "C586T", "G619A", "C623T", "C635T", "A678G", "C694A", "T695G", "C698T", "G701A", "G740A", "C747A", "T827C", "T858C", "T884C", "T988C", "G1089A", "T1299C", "A1473C", "C1500T", "T1559C", "A1565G", "G1568A", "A1622G", "T1653C", "T1676C", "A1751G", "G1819A", "T1954C", "T2024C", "G2074A", "A2227G", "A2371G", "T2440C", "C2503T", "C2584T", "G2681A", "G2683A", "G2714A", "T2737C", "A2746T", "G2761A", "G2843A", "T2996C", "G3027A", "G3044A", "G3091A", "G3094A", "C3178T", "G3188A", "G3334A", "A3388G", "A3435G", "A3664G", "A3900G", "A3910G", "T3946C", "A4084G", "A4087G", "A4107G", "A4254C", "A4273G", "C4318T", "T4321C", "G4335A", "A4336G", "A4495G", "G4539A", "A4682C", "T4703G", "C4728A", "G4779A", "A4781G", "A4838G", "C4844T", "G4855A", "A4863G", "T4916C", "T4976C", "C5027T", "T5072C", "C5114T", "C5248G", "T5292C", "G5412A", "A5462T", "G5548A", "G5556A", 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"-107K", "-109A", "T133A", "S143L", "N159S", "N212S", "R245S", "D251N", "K267V", "T269I", "I305L", "N308D", "Q315H", "A322G", "K332S", "N368Y", "-370S", "-372Y", "-374T", "-375A", "-376N", "I396V", "N414K", "I418K", "V461I"], "gp41": ["F11V", "D113E", "N133S", "S140I", "T165S", "K172R", "A189T", "V194I", "P219L", "D232G", "H239Q", "L244I", "G286W", "I309V", "A310V", "I318V", "E320A", "R342S"], "nef": ["S8N", "S9R", "I16V", "E24G", "A50D", "T80D", "Q107H"], "p17": ["H28R", "T53S", "M61T", "K62R", "F79Y", "T84V", "R95Q", "T115A", "A118P", "A119K"], "p24": ["L6I", "V86A", "V148I"], "p6": ["S47N"], "rev": ["R14N", "I55L", "A62D", "I102V", "G104V"], "tat": ["N29I", "A58T"], "vif": ["F39L", "H48N", "V65M", "R90K", "K93G"], "vpr": ["I63T"], "vpu": ["L34Q", "K66Q"]}, "labels": {"aa": "INT: K42R, K111R, K160T, R187K, S255N; RT-p51: G196R, E207K, D250N, R311K, V317I, V365I; RT-p66: G196R, E207K, D250N, R311K, V317I, V365I, N447S; gp120: S3L, Y33H, K35R, M67I, N74D, I81V, N102S, -105I, -106S, -107K, -109A, T133A, S143L, N159S, N212S, R245S, D251N, K267V, T269I, I305L, N308D, Q315H, A322G, K332S, N368Y, -370S, -372Y, -374T, -375A, -376N, I396V, N414K, I418K, V461I; gp41: F11V, D113E, N133S, S140I, T165S, K172R, A189T, V194I, P219L, D232G, H239Q, L244I, G286W, I309V, A310V, I318V, E320A, R342S; nef: S8N, S9R, I16V, E24G, A50D, T80D, Q107H; p17: H28R, T53S, M61T, K62R, F79Y, T84V, R95Q, T115A, A118P, A119K; p24: L6I, V86A, V148I; p6: S47N; rev: R14N, I55L, A62D, I102V, G104V; tat: N29I, A58T; vif: F39L, H48N, V65M, R90K, K93G; vpr: I63T; vpu: L34Q, K66Q"}}}, {"name": "KU820825", "node_attrs": {"div": 0.28674, "accession": "KU820825", "clade_membership": {"value": "other"}, "country": {"value": "MM"}, "date": {"value": 2013.0}, "Strain_name": {"value": "mSSDU12"}, "LANL_subtype": {"value": "CRF82_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G367A", "T435A", "A527C", "G612A", "A620G", "A674G", "C700T", "A704-", "A715-", "A725G", "C749T", "A809G", "A881G", "A991C", "G1077A", 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"T250S", "A253V", "Y302H", "A307R", "R316G", "S318G", "K319E", "T330I", "P336S", "-370G", "-372V", "N373S", "-374N", "N378S", "-379A", "-380T", "-381N", "-382E", "-383S", "-384S", "-385T", "I388T", "T437-"], "gp41": ["L4Q", "L12S", "Q108E", "K109R", "Q119E", "D121E", "N129D", "Y132F", "K156N", "S160N", "N166K", "D232S", "H258R", "R324G"], "nef": ["S46N", "K104R"], "p17": ["G11E", "L34I", "D93N", "E120M", "A121G"], "p2": ["-7T", "T8N", "S10-"], "p24": ["Q87P", "A116T", "S120A", "V124I", "K154R", "T171V", "D187E", "G208A"], "p7": ["S12P"], "rev": ["R4G", "R50K", "A57T", "E87K"], "tat": ["K17M", "K50R", "Q60P", "I69V", "S84P"], "vif": ["I31T", "K63I", "T188A", "N190S"], "vpr": ["S4P", "H15R", "E48N"], "vpu": ["T2S", "S7G", "K35R", "N73D", "P76H"]}, "labels": {"aa": "INT: E11D, L45V, G163E; RT-p51: V317A, K374R, A437V; RT-p66: V317A, K374R, A437V, H483Q, L491V; gp120: E4D, A20V, E59G, N102H, N108-, T110-, -111N, -112V, -113S, -114S, -115S, -116S, K127-, K140R, R150K, N161T, N212H, L249M, T250S, A253V, Y302H, A307R, R316G, S318G, K319E, T330I, P336S, -370G, -372V, N373S, -374N, N378S, -379A, -380T, -381N, -382E, -383S, -384S, -385T, I388T, T437-; gp41: L4Q, L12S, Q108E, K109R, Q119E, D121E, N129D, Y132F, K156N, S160N, N166K, D232S, H258R, R324G; nef: S46N, K104R; p17: G11E, L34I, D93N, E120M, A121G; p2: -7T, T8N, S10-; p24: Q87P, A116T, S120A, V124I, K154R, T171V, D187E, G208A; p7: S12P; rev: R4G, R50K, A57T, E87K; tat: K17M, K50R, Q60P, I69V, S84P; vif: I31T, K63I, T188A, N190S; vpr: S4P, H15R, E48N; vpu: T2S, S7G, K35R, N73D, P76H"}}}]}, {"name": "other_NODE_0000020", "node_attrs": {"div": 0.24592999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C419T", "T667-", "T2353C", "T2356C", "A2386T", "A2410C", "T2443C", "T2456G", "G2459A", "C2485T", "A2509G", "G2524A", "A3385G", "G3491A", "T3545A", "A3916G", "C5239T", "G5272A", "T5333C", "C5358A", "C5359G", "C5372A", "G5412T", "A5431G", "C5432A", "T5442C", "G5444A", "C5445T", "A5461C", "A5462G", "T5467A", "C5478T", "A5480T", "T5492A", "C5511T", "C5538G", "G5619A", "A5621C", "A5626T", "G5627T", "T5628A", "G5639C", "C5641T", "A5644G", "T5659A", "A5670T", "G5686T", "T5688C", "A5699G", "C5707A", "A5769C", "A5788T", "C5789T", "G5791T", "A5792C", "A5795C", "C5802-", "C5806-", "-5811G", "A5817-", "T5827C", "T5840A", "G5843T", "G5845A", "A5848G", "G5851T", "T5861G", "T5878C", "T5896A", "G5902A", "C5923T", "T6181-", "C6189-", "C6190-", "A6191-", "T6193-", "T6285A", "T6395A", "C6396A", "A6779G", "A6788G", "A6791G", "T6949-", "-6979A", "-6980G", "-6981A", "-6982G", "-6984A", "-6987A", "T7078C", "A7269C", "T7604A", "A7660G", "C8080A", "C8095A", "G8161A", "C8168G", "A8184T", "T8200C", "C8294A", "A8364T", "C8460T", "G8537A"], "RT-p51": ["Y121D", "E122K"], "RT-p66": ["Y121D", "E122K", "V466I", "L484I"], "gp120": ["-105D", "-106V", "V144E", "N157-", "S181N", "K312E", "T313A", "N432-"], "gp41": ["S101T", "N133R", "P219L", "Q294L", "T307I"], "nef": ["S8C", "H40Y"], "p24": ["S120G"], "rev": ["L78I", "C89G", "*117E"], "tat": ["T19E", "S23N", "K29R", "C31S", "W32Y", "Q35L", "L39Q"], "vif": ["K36N"], "vpr": ["P85R", "G89A"], "vpu": ["G11A", "I13V", "L18I", "A27F", "K31R", "L67M", "V78D", "G79V", "D80N", "N81D", "V82L"]}, "labels": {"aa": "RT-p51: Y121D, E122K; RT-p66: Y121D, E122K, V466I, L484I; gp120: -105D, -106V, V144E, N157-, S181N, K312E, T313A, N432-; gp41: S101T, N133R, P219L, Q294L, T307I; nef: S8C, H40Y; p24: S120G; rev: L78I, C89G, *117E; tat: T19E, S23N, K29R, C31S, W32Y, Q35L, L39Q; vif: K36N; vpr: P85R, G89A; vpu: G11A, I13V, L18I, A27F, K31R, L67M, V78D, G79V, D80N, N81D, V82L"}}, "children": [{"name": "KC990124", "node_attrs": {"div": 0.28966, "accession": "KC990124", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2010.0}, "Strain_name": {"value": "JL100010"}, "LANL_subtype": {"value": "CRF61_BC"}}, "branch_attrs": {"mutations": {"nuc": ["A133T", "-160C", "-161A", "-280G", "C281-", "A371G", "T435C", 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"T5797A", "G5800-", "C5801-", "A5803-", "A5804-", "A5805-", "T5807-", "G5808-", "-5817T", "G5824A", "C5826T", "G5830A", "A5831G", "T5832G", "C5834T", "T5836C", "G5837T", "T5852G", "G5856A", "C5859G", "C5860G", "C5862G", "G5864A", "A5867G", "A5868G", "T5884A", "C5920T", "T5929C", "G6022A", "T6023A", "C6097T", "T6160C", "A6167G", "T6172G", "G6174A", "C6175G", "G6179-", "A6182-", "C6183-", "T6184-", "A6185-", "A6186-", "T6187-", "-6197A", "-6198G", "-6199C", "-6200A", "-6201G", "-6202C", "-6203A", "-6204A", "-6205G", "-6206G", "-6208T", "-6209C", "-6210A", "-6211G", "-6212G", "-6213A", "-6216T", "-6217G", "A6219-", "G6227-", "A6228-", "A6230-", "T6231-", "A6232-", "A6236G", "T6238G", "A6265G", "A6282C", "A6285G", "C6305A", "T6307C", "A6311C", "A6319T", "A6324G", "T6328G", "T6331C", "A6332T", "A6333C", "T6337C", "A6338G", "G6339A", "T6340G", "A6342C", "A6344T", "G6345A", "A6346C", "A6349G", "T6424C", "A6449C", "G6451A", "G6466A", "T6487C", "T6490C", "A6535G", "G6547A", "A6573G", "G6577A", "A6602G", "C6612T", "T6631G", "G6638C", "A6653G", "A6654T", "A6684G", "T6738C", "G6743A", "G6773A", "G6774A", "A6776G", "T6778G", "A6780G", "T6787G", "A6797G", "A6799C", "A6801G", "A6806G", "G6807A", "T6808G", "A6810G", "G6818A", "A6848G", "C6850A", "A6854G", "C6860T", "A6871G", "C6875T", "G6935C", "G6936A", "C6937A", "C6938T", "G6948-", "A6950-", "C6951-", "A6952-", "T6953-", "A6954-", "C6955-", "G6963A", "-6967T", "-6968A", "-6969G", "-6970G", "-6971A", "-6972A", "-6974G", "-6975A", "-6977A", "-6978C", "A6989-", "A6990-", "A6992-", "C6993-", "G6998-", "A6999-", "C7008T", "C7009A", "T7011C", "A7015G", "A7021T", "G7026A", "C7089A", "T7107G", "A7111C", "T7114C", "C7127T", "A7147G", "A7148T", "A7149C", "A7155C", "A7158C", "A7160-", "A7161-", "T7162-", "A7234G", "A7268C", "A7342T", "A7348C", "T7403C", "C7429T", "A7463C", "C7498T", "A7533G", "G7640C", "A7685T", "C7690T", "G7702A", "A7714C", "A7800G", "T7801G", "A7846G", "A7847G", "T7852G", "T7876C", "A7880G", "G7915A", "C7950A", "G7961A", "G7997A", "A7998C", "G8032T", "C8047T", "G8055A", "A8086G", "T8097C", "G8102A", "A8118T", "G8133A", "C8146T", "A8163G", "A8188G", "G8201A", "T8209C", "T8214A", "G8264T", "G8276C", "C8277T", "G8280A", "A8297G", "G8304C", "A8329G", "A8342G", "G8348T", "C8351G", "C8369T", "A8370G", "A8372G", "A8386G", "A8388G", "G8396A", "A8399G", "A8446G", "C8500A", "T8501C", "A8503C", "G8531A", "G8532A", "G8534A", "T8584A", "G8588A", "T8595C", "T8597A", "C8603T", "T8607C", "T8608A", "T8651C", "T8701A", "C8741T", "A8762G", "C8789A", "G8794A", "G8804A", "A8812C", "A8882G", "T8883C", "C8907T", "A8912G", "C8913T", "A8914T", "A8918T", "A8922G", "G8924A", "C8930A", "C8934A", "T8935A", "T8947G", "T8948G", "-8971C", "-8974T", "T8976C", "-8977G", "-8978C", "A8980-", "-8993T", "A8998C", "C8999G", "T9002C", "C9004-", "A9005-", "C9068T", "A9131G", "T9172G", "G9173A"], "INT": ["D41N", "L45Q", "M50R", "I101L", "I135V", "Q136K", "K160T"], "RT-p51": ["C162S", "V317I", "Q334H"], "RT-p66": ["C162S", "V317I", "Q334H", "S491A", "R530K", "S534T"], "gp120": ["S1N", "A2G", "S3G", "E4K", "N5G", "N21K", "F57I", "-107K", "T110-", "-114S", "-115S", "-116K", "-117G", "-118Q", "I126M", "N128E", "E136V", "K143T", "E144G", "L151I", "I153L", "-157G", "N159S", "N160S", "N161E", "I166N", "N167S", "K199Q", "T250A", "A253V", "H259Q", "E262Q", "N267V", "K277R", "D294G", "D297N", "A307K", "N308E", "N309G", "N311K", "K315D", "S318E", "K319R", "A322T", "K332E", "T334A", "P336S", "G361Q", "S365I", "Y367E", "-368K", "-370I", "I386-", "R391K", "E401G", "A412E", "I418R", "T433S", "N435T", "K472P"], "gp41": ["M54L", "K77R", "D113Q", "T128S", "E137D", "K144R", "N166R", "I182V", "I193V", "P216H", "G220R", "D232T", "S251N", "E272V", "R277N", "N287S", "A300T", "L304Y", "A321L", "A325L", "C326Y", "I332V", "R334T"], "nef": ["I10V", "N15S", "I16V", "Q35R", "A53D", "D54A", "E64K", "F85L", "F89H", "D149E", "R151K", "N157T", "M168V", "Q188H", "H191F", "R192S", "R194V", "L198K", "F202W"], "p17": ["M61I", "K90S", "G91E", "K110N", "K114R", "T115A", "A119K"], "p2": ["-11A", "M14L"], "p24": ["I27V", "E79D", "V86P", "H87Q", "I91L", "Q95L", "T108S", "A116T", "T148S", "S210T"], "p6": ["T23A", "P24S", "P30M"], "rev": ["I21V", "R38Q", "R50N", "A62S", "R80G", "P100S", "T114A"], "tat": ["Y26F", "K40T", "N67S", "P68L", "P70S", "P81T"], "vif": ["E45D", "K63R", "I87V", "R93K", "K160R", "N176K"], "vpr": ["G41S", "I46V", "E48D", "T49N", "A55T", "F72Y", "Q77H", "I84V"], "vpu": ["T2L", "P3D", "I6S", "S7A", "A8L", "I9A", "A19V", "F27Y", "I33L", "L34V", "D62E", "A65S", "K66T", "E70D", "F74L", "D75R", "P76L", "W77L", "L82W"]}, "labels": {"aa": "INT: D41N, L45Q, M50R, I101L, I135V, Q136K, K160T; RT-p51: C162S, V317I, Q334H; RT-p66: C162S, V317I, Q334H, S491A, R530K, S534T; gp120: S1N, A2G, S3G, E4K, N5G, N21K, F57I, -107K, T110-, -114S, -115S, -116K, -117G, -118Q, I126M, N128E, E136V, K143T, E144G, L151I, I153L, -157G, N159S, N160S, N161E, I166N, N167S, K199Q, T250A, A253V, H259Q, E262Q, N267V, K277R, D294G, D297N, A307K, N308E, N309G, N311K, K315D, S318E, K319R, A322T, K332E, T334A, P336S, G361Q, S365I, Y367E, -368K, -370I, I386-, R391K, E401G, A412E, I418R, T433S, N435T, K472P; gp41: M54L, K77R, D113Q, T128S, E137D, K144R, N166R, I182V, I193V, P216H, G220R, D232T, S251N, E272V, R277N, N287S, A300T, L304Y, A321L, A325L, C326Y, I332V, R334T; nef: I10V, N15S, I16V, Q35R, A53D, D54A, E64K, F85L, F89H, D149E, R151K, N157T, M168V, Q188H, H191F, R192S, R194V, L198K, F202W; p17: M61I, K90S, G91E, K110N, K114R, T115A, A119K; p2: -11A, M14L; p24: I27V, E79D, V86P, H87Q, I91L, Q95L, T108S, A116T, T148S, S210T; p6: T23A, P24S, P30M; rev: I21V, R38Q, R50N, A62S, R80G, P100S, T114A; tat: Y26F, K40T, N67S, P68L, P70S, P81T; vif: E45D, K63R, I87V, R93K, K160R, N176K; vpr: G41S, I46V, E48D, T49N, A55T, F72Y, Q77H, I84V; vpu: T2L, P3D, I6S, S7A, A8L, I9A, A19V, F27Y, I33L, L34V, D62E, A65S, K66T, E70D, F74L, D75R, P76L, W77L, L82W"}}}, {"name": "other_NODE_0000021", "node_attrs": {"div": 0.27673, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T155G", "A157G", "-160T", "A301G", "A398G", "G491A", "A500C", "A513C", "G579C", "T668-", "C672-", "A673-", "A674-", "A675-", "A676-", "A677-", "A678-", "T718G", "T767C", "C771G", "G810A", "A815G", "T824C", "T978G", "C1094T", "T1143C", "C1292T", "A1622G", "C1679T", "A1691G", "-1735T", "C1741A", "C1767T", "T1832C", "A1855G", "A1894G", "A2007G", "T2035C", "A2056G", "C2063A", "T2080G", "T2086A", "A2128G", "G2182A", "A2194C", "C2199T", "C2202A", "G2210A", "A2211C", "T2212A", "A2237T", "T2263C", "C2266T", "A2273G", "A2287G", "G2290A", "G2305A", "C2335T", "C2410T", "A2419G", "C2464T", "A2498C", "G2682C", "G2714C", "G2752A", "A2985C", "C3006A", "A3007G", "A3120T", "A3127G", "C3405T", "A3487T", "A3524G", "A3751G", "T3844C", "C3857A", "G3859A", "A4084G", "G4145A", "C4146G", "G4178A", "A4254G", "A4315G", "C4428T", "A4433G", "C4471T", "T4537G", "T4656C", "A4684G", "C4728A", "A4748G", "C4757T", "T4761G", "T4857A", "G4861A", "A4888G", "C4890A", "T4914C", "A5050G", "A5173G", "C5197T", "C5213A", "C5248A", "T5251A", "T5260C", "T5281C", "T5292C", "T5313C", "A5355T", "C5454T", "T5466C", "G5471T", "T5472C", "C5508A", "-5602A", "-5603A", "C5612A", "G5620A", "A5622C", "A5640C", "G5643A", "G5652A", "C5653G", "T5654C", "C5658A", "T5679C", "C5687T", "T5708G", "A5711G", "A5737G", "G5739T", "A5781T", "T5793A", "T5797C", "-5799T", "G5800A", "C5801T", "-5802G", "A5803G", "A5805G", "-5806A", "-5809G", "-5810G", "G5812-", "T5813-", "G5814-", "G5815-", "A5816-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "G5824C", "T5828A", "A5831C", "G5842A", "C5860T", "G5907A", "T5911A", "A5917C", "A5926G", "A5935C", "A5962G", "G5965A", "A6009G", "A6020C", "C6052T", "G6085T", "T6109G", "G6121A", "T6160A", "C6165A", "T6184C", "-6218G", "-6220G", "-6222G", "-6223G", "-6226A", "-6229A", "T6261A", "A6268G", "A6275C", "C6278A", "G6280A", "G6323A", "T6331G", "G6336C", "T6418C", "A6461C", "G6463T", "A6520G", "G6572A", "A6589C", "A6622C", "G6638A", "T6758C", "G6774C", "A6798G", "G6802T", "A6825T", "C6862A", "T6863G", "C6864T", "-6949A", "-6956A", "A6985G", "-6988T", "-6991T", "-6995G", "-6997A", "-7001A", "-7003C", "-7004A", "-7005C", "C7016-", "G7056A", "A7063G", "T7107C", "A7135G", "G7182A", "A7183G", "G7190A", "A7261G", "A7375G", "T7433C", "A7519C", "A7583C", "C7605T", "A7626G", "C7651T", "G7734A", "A7796T", "C7825T", "A7858G", "T7876A", "T7912C", "G7943C", "A7964G", "G8006A", "T8115G", "C8165A", "G8208A", "T8210C", "T8265C", "C8291T", "A8305G", "A8327G", "G8328C", "T8337A", "A8385G", "A8425T", "T8426C", "G8429A", "G8432A", "T8440C", "A8441G", "C8451T", "G8453A", "A8456T", "A8469C", "C8471T", "T8477C", "T8483C", "C8488A", "A8489C", "G8490A", "T8492C", "C8510T", "A8516G", "G8517A", "A8518G", "T8543C", "C8585T", "T8594A", "C8715G", "A8717C", "A8729G", "A8739G", "T8756C", "G8844A", "T8847A", "A8851T", "A8874G", "T8887G", "C8903T", "C8906A", "G8917A", "A8918G", "T8923G", "A8936G", "-8971G", "-8974G", "-8977A", "-8978G", "-8979A", 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"V82L", "S111T", "Q112-", "Q113-", "K114-", "T115-", "E120D", "A121-", "V128-"], "p24": ["P14A", "L83V"], "p6": ["P30S"], "pro": ["S12P", "I19M", "K70R", "L89M"], "rev": ["R32T", "K39R", "R53H", "S67P", "D85G", "P106H"], "tat": ["Y32F", "Q78R"], "vif": ["K33R", "H48N", "L59V", "L91M", "R92K", "D101G", "L102M", "Y110H", "K155R"], "vpr": ["A4P", "H15Y", "P37T", "I63T", "I70T", "I84L"], "vpu": ["T2Q", "E5T", "S7L", "L16A", "L34R", "K35R", "K44D", "E58D", "T61L", "D62S", "E63A", "A65M", "K66E", "-68G", "V69-", "E70-", "M71-", "G72-", "N73H", "F74H", "D75A", "V79I"]}, "labels": {"aa": "INT: L28I, A124S, K160R, T218I, I220V, N254K; RT-p51: T35I, A36E, D39T, T48S, I60V, I135L, G196A, E207Q, E297A, A304E, Y342F, A437V; RT-p66: T35I, A36E, D39T, T48S, I60V, I135L, G196A, E207Q, E297A, A304E, Y342F, A437V, K464N, T477A, C483Y; gp120: S3A, R18K, D19E, N52S, I56L, Q77H, D85E, N102K, T104S, -107S, -111N, -122E, -123R, -124Q, K141Q, Q142K, K203H, G240K, R245S, E262K, Y302H, N309D, K315R, R316N, H324L, S337E, S365R, -368I, L388I, I418T, G443E, D446N, K472T; gp41: I24M, T94P, T101I, Q108R, T165S, G214R, R221G, V235I, S265L, T267A, V271G, L288I, S302N, R330C, R342A, L345Q; nef: N15D, D28V, V33A, E38D, I43L, A49D, A50T, E59R, Y81F, Y120F, Q125D, I133V, C169S, Q170L, R178G, M182R, R192K; p17: E55D, I60L, V82L, S111T, Q112-, Q113-, K114-, T115-, E120D, A121-, V128-; p24: P14A, L83V; p6: P30S; pro: S12P, I19M, K70R, L89M; rev: R32T, K39R, R53H, S67P, D85G, P106H; tat: Y32F, Q78R; vif: K33R, H48N, L59V, L91M, R92K, D101G, L102M, Y110H, K155R; vpr: A4P, H15Y, P37T, I63T, I70T, I84L; vpu: T2Q, E5T, S7L, L16A, L34R, K35R, K44D, E58D, T61L, D62S, E63A, A65M, K66E, -68G, V69-, E70-, M71-, G72-, N73H, F74H, D75A, V79I"}}, "children": [{"name": "KC870035", "node_attrs": {"div": 0.29286999999999996, "accession": "KC870035", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2010.0}, "Strain_name": {"value": "YNFL15"}, "LANL_subtype": {"value": "CRF62_BC"}}, 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"C7906T", "T7913C", "G7915A", "C7921A", "C7940T", "G7957A", "G7997A", "A8023G", "A8032G", "T8037C", "C8038G", "G8130A", "T8164C", "T8171A", "T8182C", "A8204G", "A8227T", "G8255A", "A8262C", "T8265G", "A8288T", "C8291A", "A8303G", "G8304T", "A8338G", "A8342G", "T8375C", "A8386C", "G8387T", "G8405A", "A8409G", "A8432G", "C8460T", "T8462C", "C8514T", "G8528A", "A8531T", "G8534A", "T8546C", "G8555A", "T8585C", "G8588A", "T8603C", "A8643G", "G8654A", "C8661A", "A8663G", "T8676C", "C8684T", "T8687C", "A8739G", "T8740A", "C8741A", "G8753A", "G8774A", "C8775T", "A8795C", "C8809A", "A8823G", "G8830A", "C8832T", "A8837G", "C8843T", "C8850T", "A8851T", "G8864A", "G8875A", "G8882A", "A8886G", "A8918T", "C8934A", "T8935A", "G8936A", "G8942T", "A8947T", "A8954G", "A8967C", "A9009T", "T9012G", "G9019T", "A9026G", "G9027A", "T9028C", "T9040G", "A9042G", "C9068T", "-9109T", "A9131G", "G9132A"], "INT": ["A125T", "K156N"], "RT-p51": ["V35I", "K103N", "E122K", "D123E", "I135L", "S162C", "P176T", "G196E", "E245V", "A272P", "V276I", "A288G", "E297A", "H315Q", "V317A", "D324E", "I326V", "E344D", "P345A", "F346Y", "T400A", "T403M", "V435I"], "RT-p66": ["V35I", "K103N", "E122K", "D123E", "I135L", "S162C", "P176T", "G196E", "E245V", "A272P", "V276I", "A288G", "E297A", "H315Q", "V317A", "D324E", "I326V", "E344D", "P345A", "F346Y", "T400A", "T403M", "V435I", "L452I", "R463K", "V467I", "N519S", "K550R", "S554T", "I556V"], "gp120": ["Y11H", "P57H", "E59K", "V73A", "L101M", "-109V", "-111S", "-112N", "-114S", "-115S", "-116S", "-123T", "-124D", "K127R", "I133V", "K142R", "N160G", "L165I", "T170S", "K212R", "E240D", "I243V", "L249I", "I279V", "H280P", "I305V", "K309E", "N311G", "T313V", "K315T", "A318K", "K322E", "E323K", "I332V", "S365C", "W367N", "-368N", "-369N", "-371T", "R391K", "I411V", "S412R", "N414R", "N432K", "-433T", "N435S", "G443E", "S453N", "I468L", "K474R", "E481Q"], "gp41": ["M54L", "V72L", "K77R", "E133A", "S138A", "N140D", "K144R", "E151A", "K154Q", "D163S", "F206L", "Q213T", "D230G", "D232N", "L290I", "I301V", "E320A", "V321G", "I329F", "L330I", "R334V"], "nef": ["T23A", "H40Y", "E63D", "E65D", "Y81F", "I101V", "Q107K", "E108D", "Y120F", "I133E", "N161D", "S163N", "Q170L", "R178K", "M182V", "R191L", "L198K", "Y202F"], "p17": ["I60A", "V82I", "A83V", "I104L", "N109K", "D121S"], "p2": ["N9T", "-10P", "-12T", "I13V"], "p24": ["S41T", "H87Q", "I91N", "V148T", "R154K", "A194S"], "p6": ["A12E", "T22A", "P25S", "K31I", "D32N", "L50*"], "p7": ["R11K", "I12T", "V13I", "D48E"], "pro": ["I36M", "L63A", "V82I", "M89L", "I93L"], "rev": ["S31N", "A37T", "R50K", "I59V", "T62A", "L64V", "S106P", "V108D", "S112P"], "tat": ["Y47H", "S62R", "I69V", "K71E", "A74T", "G83D"], "vif": ["F39C", "V51I", "V65I", "R67K", "Q73H", "K77R", "H83Q", "Q91K", "R92Q", "S95N", "I98V", "H110Y", "K122N", "I124L", "Q127H", "I128R", "R130S", "N140R", "K151T", "T154I", "T155K", "I159R", "K167T"], "vpr": ["Y15H", "Q44E", "I63T", "F72Y", "A93T"], "vpu": ["V10I", "V14A", "A27G", "Y30A", "D80N"]}, "labels": {"aa": "INT: A125T, K156N; RT-p51: V35I, K103N, E122K, D123E, I135L, S162C, P176T, G196E, E245V, A272P, V276I, A288G, E297A, H315Q, V317A, D324E, I326V, E344D, P345A, F346Y, T400A, T403M, V435I; RT-p66: V35I, K103N, E122K, D123E, I135L, S162C, P176T, G196E, E245V, A272P, V276I, A288G, E297A, H315Q, V317A, D324E, I326V, E344D, P345A, F346Y, T400A, T403M, V435I, L452I, R463K, V467I, N519S, K550R, S554T, I556V; gp120: Y11H, P57H, E59K, V73A, L101M, -109V, -111S, -112N, -114S, -115S, -116S, -123T, -124D, K127R, I133V, K142R, N160G, L165I, T170S, K212R, E240D, I243V, L249I, I279V, H280P, I305V, K309E, N311G, T313V, K315T, A318K, K322E, E323K, I332V, S365C, W367N, -368N, -369N, -371T, R391K, I411V, S412R, N414R, N432K, -433T, N435S, G443E, S453N, I468L, K474R, E481Q; gp41: M54L, V72L, K77R, E133A, S138A, N140D, K144R, E151A, K154Q, D163S, F206L, Q213T, D230G, D232N, L290I, I301V, E320A, V321G, I329F, L330I, R334V; nef: T23A, H40Y, E63D, E65D, Y81F, I101V, Q107K, E108D, Y120F, I133E, N161D, S163N, Q170L, R178K, M182V, R191L, L198K, Y202F; p17: I60A, V82I, A83V, I104L, N109K, D121S; p2: N9T, -10P, -12T, I13V; p24: S41T, H87Q, I91N, V148T, R154K, A194S; p6: A12E, T22A, P25S, K31I, D32N, L50*; p7: R11K, I12T, V13I, D48E; pro: I36M, L63A, V82I, M89L, I93L; rev: S31N, A37T, R50K, I59V, T62A, L64V, S106P, V108D, S112P; tat: Y47H, S62R, I69V, K71E, A74T, G83D; vif: F39C, V51I, V65I, R67K, Q73H, K77R, H83Q, Q91K, R92Q, S95N, I98V, H110Y, K122N, I124L, Q127H, I128R, R130S, N140R, K151T, T154I, T155K, I159R, K167T; vpr: Y15H, Q44E, I63T, F72Y, A93T; vpu: V10I, V14A, A27G, Y30A, D80N"}}, "children": [{"name": "MN187302", "node_attrs": {"div": 0.14676, "accession": "MN187302", "clade_membership": {"value": "other"}, "country": {"value": "JP"}, "date": {"value": 2013.0}, "Strain_name": {"value": "D9547"}, "LANL_subtype": {"value": "CRF76_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T10G", "T87-", "G88-", "A89-", "G90-", "T91-", "G92-", "C93-", "T95-", "C96-", "A97-", "A98-", "T100-", "A101-", "G104-", "T107-", "G108-", "C109-", "C110-", "T117-", "T118-", "G119-", "G121-", "T122-", "G123-", "-166G", "-167A", "-169C", "T200C", "A534G", "A655C", "G956T", "C994T", "T1004C", "A1349G", "G1685A", "A2215G", "A2400G", "C2644T", "G2984A", "T3131C", "A3226G", "G3439A", "A3571G", "A3682G", "A3727G", "C4210T", "A4303G", "A4384G", "T4412C", "A4555G", "A4769C", "G4855A", "A5288T", "G5289T", "T5293G", "-5599A", "-5602A", "A5640G", "C5860T", "T6067A", "G6085T", "A6180C", "-6208T", "A6273G", "A6281G", "A6324G", "A6329G", "A6333G", "A6338G", "G6345T", "A6490T", "A6584G", "A6881G", "T6904C", "-6961T", "A7148G", "A7149T", "G7235A", "G7269A", "G7295C", "G7366A", "A7630C", "A7641G", "C7642A", "G7658C", "A7799C", "T7801A", "G7965A", "A8029G", "G8219A", "A8308G", "G8537T", "C8543T", "G9030A", "C9075T", "T9078C"], "INT": ["I203M"], "RT-p51": ["K102R", "A297T", "Y346H"], "RT-p66": ["K102R", "A297T", "Y346H"], "gp120": ["N71K", "Q77H", "N105-", "S111L", "N112T", "S114A", "-117I", "-118N", "-119I", "-120G", "-121N", "-122I", "I126V", "K140R", "K143E", "N158S", "R164M", "R212S", "I244V", "I343V", "S370G", "-372C", "-373N", "-374G", "K432V", "V461I", "R472K"], "gp41": ["E109D", "N113G", "E119Q", "N166Q", "R214S", "G215R", "G221E", "A306T"], "p17": ["M31L", "T67A", "E107A"], "p24": ["E75D", "A88V", "E180D"], "rev": ["S61G"], "tat": ["E86K"], "vif": ["E61D", "R90K"], "vpr": ["R62L", "T63M"]}, "labels": {"aa": "INT: I203M; RT-p51: K102R, A297T, Y346H; RT-p66: K102R, A297T, Y346H; gp120: N71K, Q77H, N105-, S111L, N112T, S114A, -117I, -118N, -119I, -120G, -121N, -122I, I126V, K140R, K143E, N158S, R164M, R212S, I244V, I343V, S370G, -372C, -373N, -374G, K432V, V461I, R472K; gp41: E109D, N113G, E119Q, N166Q, R214S, G215R, G221E, A306T; p17: M31L, T67A, E107A; p24: E75D, A88V, E180D; rev: S61G; tat: E86K; vif: E61D, R90K; vpr: R62L, T63M"}}}, {"name": "MN187303", "node_attrs": {"div": 0.14854, "accession": "MN187303", "clade_membership": {"value": "other"}, "country": {"value": "JP"}, "date": {"value": 2012.0}, "Strain_name": {"value": "N628"}, "LANL_subtype": {"value": "CRF76_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T24-", "A66G", "-94C", "-102A", "-103A", "-105C", "-106T", "-120A", "A168-", "A170-", "A171-", "T172-", "C173-", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "A360G", "G361T", "C426A", "G438A", "T746C", "T988C", "T1271G", "A1277G", "A1404G", "C1490T", "T1505C", "G1508A", "G1981A", "T2077A", "A2154G", "A2230G", "A2239C", "A2693G", "A2743C", "C2769A", "C3140T", "G3142A", "G3168A", "A3217G", "C3266T", "A3280G", "A3562G", "G3791A", "G3866A", "C3908T", "C4079T", "C4195T", "A5085G", "A5284G", "T5292C", "C5438A", "T5600-", "A5601-", "A5603-", "T5604-", "G5605-", "T5606-", "A5607-", "C5696T", "A5698G", "C6039T", "T6154C", "T6171C", "C6174G", "C6177T", "A6206G", "-6208A", "A6248C", "G6283A", "A6443C", "C6469T", "A6648G", "A6686G", "C6692A", "A6935C", "-6961G", "G6974A", "G7048A", "G7055A", "A7224G", "A7296G", "A7298G", "G7441A", "A7447T", "T7466C", "G7640A", "G7769A", "A7921G", "C7941T", "A7957T", "A7962G", "C8146T", "G8274T", "G8317A", "A8536G", "A8824C", "A8893G", "C9017T"], "INT": ["D6N", "V31I"], "RT-p51": ["K20R", "T200A", "P225H", "R358K"], "RT-p66": ["K20R", "T200A", "P225H", "R358K"], "gp120": ["T62I", "-106A", "-107S", "V109A", "S116I", "-122E", "T123I", "D124G", "E125N", "R127T", "N132H", "D157S", "G160R", "I197L", "E265G", "S278G", "V279-", "P280-", "I281-", "G284-", "P285-", "G286-", "Q287-", "V288-", "F289-", "Y290V", "R291T", "T292I", "D294P", "P336Q", "K361Q", "T385-", "M398I", "G401R", "K457R", "Q481G", "K482E"], "gp41": ["A156T", "R218S", "E220G", "R324I"], "nef": ["D65G", "D161A", "K184R"], "p17": ["S9V", "V35I"], "p24": ["V86A", "S225G"], "rev": ["T37S", "P100S"], "tat": ["A21D", "R78*", "D83V", "K85E"], "vif": ["T167A"], "vpr": ["I60M"], "vpu": ["A30V", "R31G"]}, "labels": {"aa": "INT: D6N, V31I; RT-p51: K20R, T200A, P225H, R358K; RT-p66: K20R, T200A, P225H, R358K; gp120: T62I, -106A, -107S, V109A, S116I, -122E, T123I, D124G, E125N, R127T, N132H, D157S, G160R, I197L, E265G, S278G, V279-, P280-, I281-, G284-, P285-, G286-, Q287-, V288-, F289-, Y290V, R291T, T292I, D294P, P336Q, K361Q, T385-, M398I, G401R, K457R, Q481G, K482E; gp41: A156T, R218S, E220G, R324I; nef: D65G, D161A, K184R; p17: S9V, V35I; p24: V86A, S225G; rev: T37S, P100S; tat: A21D, R78*, D83V, K85E; vif: T167A; vpr: I60M; vpu: A30V, R31G"}}}]}, {"name": "other_NODE_0000024", "node_attrs": {"div": 0.11565, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C23T", "-152A", "-153C", "-155T", "-160C", "-161A", "-162G", "-163T", "-164G", "-165T", "-166G", "T214-", "T362C", "G378A", "C399A", "G425A", "G428A", "T435A", "T456C", "A462C", "C471G", "G495T", "A503C", "C507A", "A508G", "A518G", "A520G", "T525C", "G530A", "T531C", "A534T", "C539T", "A540C", "G592A", "G593T", "C602T", "A644G", "A656G", "T662C", "G665A", "C668T", "C669A", "C672A", "G686A", "A714C", "C1040T", "-1452G", "G1493A", "A1495G", "-1503G", "C1514T", "T1613C", "A1736G", "C2083T", "T2356C", "G2727A", "A2887G", "T2996C", "T3002C", "G4264A", "T4321C", "A5246G", "G5312A", "G5385A", "G5418A", "C5432A", "G5444A", "T5451C", "C5454T", "G5472T", "C5482G", "A5484T", "T5490C", "G5493A", "A5534G", "G5535A", "C5538G", "G5545A", "G5556A", "A5557G", "G5566A", "A5567C", "A5575G", "A5576T", "A5581C", "C5584T", "T5602C", "A5611-", "C5612-", "C5614T", "T5625A", "G5627T", "T5628A", "G5639C", "C5641T", "A5644G", "G5652A", "C5653G", "T5654C", "C5658A", "T5679C", "G5686T", "C5687T", "G5712A", "A5737G", "G5739T", "A5769C", "C5787T", "A5788T", "C5789T", "A5792C", "T5793A", "A5795C", "T5797C", "C5802G", "A5803G", "T5808G", "G5812-", "T5813-", "G5814-", "G5815-", "A5816-", "A5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "G5824C", "C5826T", "T5827C", "A5831C", "T5840A", "G5843T", "C5860T", "T5861-", "C5866A", "T5878C", "T5884C", "T5896A", "G5907A", "T5911A", "G5915A", "A5916C", "C5923T", "C5944T", "C5951T", "G5956T", "G6076A", "C6174A", "C6175G", "A6195G", "A6206-", "-6230A", "T6241C", "C6278A", "T6466G", "G6726A", "A6752C", "A6819G", "G6823A", "G6841A", "G7033A", "T7156C", "C7165T", "A7195G", "G7269A", "G7289C", "A7325T", "A7339G", "G7366A", "G7456A", "A7492G", "A7552G", "C7553A", "A7574C", "C7597T", "C7606T", "C7608G", "T7625C", "A7626T", "T7627A", "A7630T", "C7642T", "A7651C", "A7657G", "G7658C", "A7660G", "A7676G", "G7677A", "A7692T", "T7699C", "G7700A", "G7702C", "A7703T", "A7709G", "C7710A", "C7732A", "A7735G", "A7742C", "G7744A", "T7747A", "G7750A", "A7753G", "T7801C", "A7929G", "C7984A", "G7992A", "G8019A", "G8036A", "C8092A", "A8093C", "C8112T", "G8145C", "C8156T", "T8157G", "G8159T", "T8167C", "T8171C", "T8172A", "A8173G", "G8180A", "A8194G", "T8196A", "T8207A", "C8208G", "G8216A", "T8221C", "C8268T", "C8277T", "A8370-", "A8372G", "A8402G", "T8477C", "-8487G", "-8488C", "-8489A", "-8490G", "-8492T", "T8509C", "G8537A", "T8701A", "A8717G", "T8754A", "G8755C", "T8756C", "C8789T", "G8804A", "A9181C"], "RT-p51": ["R211K"], "gp120": ["D4E", "R18K", "D19E", "D21T", "H33Y", "E34D", "-111N", "E162S", "N204K", "S272N", "K300Q", "K319E", "I447M", "R472K", "E479Q"], "gp41": ["I8F", "L84I", "I91L", "T102S", "Y108L", "E109D", "N113D", "I118M", "S125D", "Q130L", "E133N", "I134L", "T136E", "D143E", "K147Q", "S239N", "A245I", "F263L", "I264L", "T270I", "G281A", "L285W", "G286W", "L290Q", "G293S", "I298N", "D305N", "A322V"], "nef": ["I20M", "N49A", "-50D", "-51N", "V56A", "D156A"], "p17": ["A15K", "M31L", "L46V", "A54S", "Q58R", "I61L", "E62G", "S66P", "T67S", "K69Q", "F79Y", "W86Y", "Q112K", "Q113K", "K127Q"], "p7": ["K10R", "L24I"], "rev": ["S7D", "T8S", "R14K", "I18L", "S31P", "H82T", "R99S", "S103L", "G104V", "S107P", "V108A", "I109V", "G111E", "N116E"], "tat": ["T19K", "S23N", "L36V", "K53R", "H54Q", "G57R", "D64T", "N67V", "I69L", "P70S"], "vif": ["R181K"], "vpr": ["N48E", "V70I", "G94S"], "vpu": ["P3S", "S7V", "G11A", "I13V", "L16A", "A27F", "K44D", "T61L", "D62E", "A65V", "K66E", "V69-", "E70-", "M71-", "G72-", "D73H", "F74L", "D75A", "V78D", "G79V"]}, "labels": {"aa": "RT-p51: R211K; gp120: D4E, R18K, D19E, D21T, H33Y, E34D, -111N, E162S, N204K, S272N, K300Q, K319E, I447M, R472K, E479Q; gp41: I8F, L84I, I91L, T102S, Y108L, E109D, N113D, I118M, S125D, Q130L, E133N, I134L, T136E, D143E, K147Q, S239N, A245I, F263L, I264L, T270I, G281A, L285W, G286W, L290Q, G293S, I298N, D305N, A322V; nef: I20M, N49A, -50D, -51N, V56A, D156A; p17: A15K, M31L, L46V, A54S, Q58R, I61L, E62G, S66P, T67S, K69Q, F79Y, W86Y, Q112K, Q113K, K127Q; p7: K10R, L24I; rev: S7D, T8S, R14K, I18L, S31P, H82T, R99S, S103L, G104V, S107P, V108A, I109V, G111E, N116E; tat: T19K, S23N, L36V, K53R, H54Q, G57R, D64T, N67V, I69L, P70S; vif: R181K; vpr: N48E, V70I, G94S; vpu: P3S, S7V, G11A, I13V, L16A, A27F, K44D, T61L, D62E, A65V, K66E, V69-, E70-, M71-, G72-, D73H, F74L, D75A, V78D, G79V"}}, "children": [{"name": "other_NODE_0000025", "node_attrs": {"div": 0.15538000000000002, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T213-", "A215-", "A216-", "C218-", "C219-", "A220-", "G221-", "A222-", "G223-", "A224-", "A225-", "G226-", "T227-", "T228-", "C229-", "T230-", "C231-", "T232-", "C233-", "G234-", "A235-", "C236-", "G237-", "C238-", "A239-", "G240-", "G241-", "A242-", "C243-", "T244-", "C245-", "G246-", "G247-", "C248-", "T249-", "T250-", "G251-", "C252-", "T253-", "G254-", "A255-", "G257-", "T258C", "A261G", "A263G", "A265G", "A278G", "-280G", "A301G", "-304A", "-305A", "C379A", "A388G", "T473C", "T485G", "T506C", "A512G", "A516C", "A562G", "A581G", "A585G", "C586T", "G607T", "C626A", "A675C", "A678G", "G696A", "G706A", "G752A", "C830T", "T885C", "A944G", "C1005G", "T1037C", "A1205G", "C1211T", "C1220T", "A1241G", "G1301A", "A1307G", "G1313T", "T1344C", "A1349G", "A1361C", "T1421C", "T1444C", "A1448T", "A1450G", "-1455A", 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"A4525G", "C4534T", "A4552G", "A4815C", "C4826A", "A4863G", "T4916C", "C4937T", "A4952G", "C4955A", "G4975T", "G5030A", "A5059G", "G5075T", "T5078C", "C5149T", "A5154C", "T5263C", "C5303T", "T5319A", "T5354C", "T5391C", "C5397T", "A5431G", "A5432G", "A5433G", "G5437C", "T5442C", "A5444C", "C5445T", "A5446G", "A5447C", "G5448T", "A5463G", "G5471T", "C5487T", "C5491A", "G5501C", "G5558A", "A5563G", "C5578T", "G5599A", "A5613-", "A5622C", "T5659C", "G5668A", "A5677T", "C5679A", "T5688C", "G5700A", "C5727T", "A5746G", "G5747C", "A5754G", "A5790G", "A5805G", "G5856A", "C5869A", "G5893A", "A5935C", "C5974T", "A6024G", "G6028A", "T6134C", "-6172C", "A6177C", "T6178A", "C6183G", "T6184C", "A6186C", "T6187A", "-6198A", "-6200G", "-6202C", "-6203T", "-6204C", "-6205T", "-6206G", "-6207G", "-6208C", "-6210T", "-6211A", "-6212G", "-6213G", "-6215A", "-6216A", "-6217T", "-6218A", "-6219T", "-6220A", "-6222C", "-6225A", "-6226T", "T6242A", "T6252C", "A6275C", "G6284A", "A6303G", "T6325A", "A6333C", "A6338G", "-6340G", "T6436G", "G6451A", "G6481A", "A6538T", "G6550A", "C6669T", "A6674T", "A6682G", "T6690C", "A6725C", "A6757T", "A6790G", "A6798G", "G6806A", "T6808A", "-6955G", "-6960A", "-6962A", "-6963G", "-6965A", "-6966A", "-6998G", "-6999G", "-7000C", "-7002A", "-7005A", "-7006C", "C7008T", "G7132A", "T7147C", "A7161C", "-7162A", "-7164A", "G7182C", "A7322C", "A7375G", "C7463A", "C7561T", "C7579T", "C7603T", "T7604A", "T7622A", "A7627G", "G7631T", "A7669G", "A7700T", "G7712A", "G7729A", "A7765G", "T7844C", "G7868A", "T7877A", "C7878A", "G7883A", "C7921T", "C7949G", "A7974G", "C7988A", "A7989G", "G8001C", "C8004T", "T8007A", "G8010C", "T8013C", "T8016C", "A8019C", "A8043T", "G8061T", "A8111G", "A8152G", "G8170C", "A8204G", "T8206C", "T8209C", "C8213T", "G8264A", "A8288T", "G8317A", "G8329A", "G8330A", "C8331G", "G8335A", "G8350C", "-8370C", "T8371C", "G8385A", "G8388A", "G8393A", "G8404A", "C8406A", "A8426G", "A8432G", "G8436C", "T8440C", "A8469C", "C8471T", "-8491A", "A8525T", "A8531T", "C8543T", "T8558A", "T8568C", "T8594C", "A8642G", "A8647G", "C8648G", "C8651T", "G8654A", "A8739G", "T8740A", "C8741A", "C8747T", "A8750C", "A8795T", "A8816G", "G8817A", "G8818A", "A8827C", "C8843G", "A8858G", "T8860A", "G8861T", "G8864T", "G8875A", "A8918T", "A8924G", "C8928A", "G8929A", "C8934A", "T8935A", "A8954G", "A8967C", "G8991A", "G9016A", "T9060A", "-9109T"], "INT": ["E11D", "M50L", "S119P", "S195T", "I201V"], "RT-p51": ["V60I", "E122K", "E169D", "V179I", "G196E", "I202V", "V317A", "M357V", "V365I", "T386I", "T403M", "V435G"], "RT-p66": ["V60I", "E122K", "E169D", "V179I", "G196E", "I202V", "V317A", "M357V", "V365I", "T386I", "T403M", "V435G", "K512Q", "K527Q", "K558R"], "gp120": ["S1N", "S3-", "N5K", "N105T", "-107N", "N108Q", "-112T", "-114S", "-115N", "-116I", "-117N", "-121N", "-123T", "K127R", "S130T", "I133T", "K141Q", "K150R", "N158T", "N159K", "N272F", "N274Y", "I279T", "H280R", "R291Q", "K315R", "A318T", "K322R", "-371N", "N414K", "-433N", "G443A"], "gp41": ["M7L", "I24M", "S101T", "S107T", "E110Q", "E119Q", "N133S", "E137K", "A189T", "S192N", "V194I", "H209R", "Q213P", "P216A", "E224G", "Q229R", "R233T", "S234F", "V235E", "R236S", "L237S", "V238A", "N239T", "D247V", "C253F", "I270V", "I301V", "L304F", "V321I", "A325V", "I329F", "A343S"], "nef": ["G3A", "I10P", "A15K", "V16I", "R21K", "G29A", "A32P", "V33A", "I43L", "Q61H", "E63D", "Y81F", "Y102W", "E108D", "I133E", "C138T", "G159K", "N162T", "M173N", "E174D", "R178K", "R191L", "I194M", "R196K", "L198K"], "p17": ["K18R", "K76R", "T84V", "R91M", "K114Q", "T115A", "D121N", "S124N"], "p2": ["V7A", "N9S", "-10A", "N11T", "-12S"], "p24": ["P92A", "E180D"], "p6": ["P25S", "K31I", "L35Q", "P49L"], "p7": ["I12T"], "pro": ["K41R", "I62V", "L63S", "I64V", "M89L"], "rev": ["A15T", "I21L", "T34S", "A47E", "Q51H", "E57D", "C63Y", "D88G", "I102V", "A108P"], "tat": ["K19G", "A21P", "N23T", "K24A", "W32F", "L39I", "G42A", "S61D", "K63E", "P68S", "D80E"], "vif": ["K77Q", "H80Q", "R93G", "R130I", "P131H", "K158R", "T188I", "N190H"], "vpr": ["E17A", "F72Y", "S96P"], "vpu": ["T2S", "E5D", "V21I", "T24S", "R47A"]}, "labels": {"aa": "INT: E11D, M50L, S119P, S195T, I201V; RT-p51: V60I, E122K, E169D, V179I, G196E, I202V, V317A, M357V, V365I, T386I, T403M, V435G; RT-p66: V60I, E122K, E169D, V179I, G196E, I202V, V317A, M357V, V365I, T386I, T403M, V435G, K512Q, K527Q, K558R; gp120: S1N, S3-, N5K, N105T, -107N, N108Q, -112T, -114S, -115N, -116I, -117N, -121N, -123T, K127R, S130T, I133T, K141Q, K150R, N158T, N159K, N272F, N274Y, I279T, H280R, R291Q, K315R, A318T, K322R, -371N, N414K, -433N, G443A; gp41: M7L, I24M, S101T, S107T, E110Q, E119Q, N133S, E137K, A189T, S192N, V194I, H209R, Q213P, P216A, E224G, Q229R, R233T, S234F, V235E, R236S, L237S, V238A, N239T, D247V, C253F, I270V, I301V, L304F, V321I, A325V, I329F, A343S; nef: G3A, I10P, A15K, V16I, R21K, G29A, A32P, V33A, I43L, Q61H, E63D, Y81F, Y102W, E108D, I133E, C138T, G159K, N162T, M173N, E174D, R178K, R191L, I194M, R196K, L198K; p17: K18R, K76R, T84V, R91M, K114Q, T115A, D121N, S124N; p2: V7A, N9S, -10A, N11T, -12S; p24: P92A, E180D; p6: P25S, K31I, L35Q, P49L; p7: I12T; pro: K41R, I62V, L63S, I64V, M89L; rev: A15T, I21L, T34S, A47E, Q51H, E57D, C63Y, D88G, I102V, A108P; tat: K19G, A21P, N23T, K24A, W32F, L39I, G42A, S61D, K63E, P68S, D80E; vif: K77Q, H80Q, R93G, R130I, P131H, K158R, T188I, N190H; vpr: E17A, F72Y, S96P; vpu: T2S, E5D, V21I, T24S, R47A"}}, "children": [{"name": "KJ485697", "node_attrs": {"div": 0.17234000000000002, "accession": "KJ485697", "clade_membership": {"value": "other"}, "country": {"value": "MY"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11MYKL055"}, "LANL_subtype": {"value": "CRF51_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A425G", "A435T", "A437G", "T571A", "G712A", "A715C", "C719T", "G818A", "G1090A", "C1175T", "A1340G", "A1343C", "G1346A", "A1359T", "T1363C", "T1484C", "G1498A", "A1587C", "G1589A", "G1736A", "A1832G", "G1845A", "A2075C", "T2077C", "A2368G", "G2422A", "C2589T", "C2671T", "T2689C", "C2714G", "A2734G", "A2755G", "A2829T", "A2925G", "C2942A", "G3044A", "C3346T", "T3359C", "A3435G", "C3499T", "C3542T", "G3643T", "A3748G", "A4076C", "G4148A", "A4243T", "G4607A", "G4727A", "T4776A", "G4855A", "A4951G", "A4966G", "T4975C", "C4993A", "A5005G", "C5047T", "C5050A", "A5051G", "G5131A", "G5137A", "A5142C", "A5159G", "G5170A", "G5179A", "C5221A", "C5248A", "C5306A", "A5385G", "A5411G", "T5439C", "T5484C", "A5548G", "T5614-", "C5615-", "T5616-", "A5619G", "G5620T", "G5629A", "G5644A", "C5651T", "C5659A", "A5702G", "A5711G", "A5784G", "T5788C", "T5789A", "C5792A", "C5795A", "C5797T", "G5802A", "A5804T", "G5808T", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819G", "-5820G", "-5821G", "-5822G", "-5823G", "G5839A", "-5861A", "C5878A", "T5956C", "A6044G", "A6076G", "T6166C", "A6168C", "-6170G", "C6172T", "C6189T", "A6197C", "-6201A", "T6250G", "A6263T", "A6324G", "A6326G", "G6458A", "G6466T", "A6471C", "A6489C", "C6673A", "C6684T", "A6689T", "G6790T", "A6820T", "A6823G", "-6833A", "-6834A", "-6835T", "T6838G", "A6840C", "-6956C", "-6957T", "-6958T", "-6959A", "-6961A", "-6964C", "-6967T", "A7002G", "A7005G", "T7008A", "A7033G", "A7037G", "A7044G", "G7092A", "A7123G", "C7201T", "A7275G", "A7303G", "A7313C", "A7315G", "C7322T", "G7440A", "G7441A", "G7517T", "A7589T", "A7590C", "G7628A", "A7629C", "T7631C", "G7657A", "C7691A", "T7692C", "A7747T", "A7755G", "A7763C", "C7801T", "C7906T", "C7969A", "A7998G", "C8033A", "C8080A", "A8163G", "T8176C", "G8181T", "A8184G", "G8255A", "G8276A", "C8294A", "G8304A", "T8310A", "A8312G", "A8314C", "T8321C"], "INT": ["A125T", "K156N", "D278N"], "RT-p51": ["T165I", "Q207E", "E245V", "K277R", "L283I", "A317T"], "RT-p66": ["T165I", "Q207E", "R211K", "E245V", "K277R", "L283I", "A317T", "N447S", "H483Y", "E516D"], "gp120": ["-3T", "P57R", "N64D", "-106L", "-109T", "N111Q", "N115T", "-118S", "-119H", "-120D", "N121S", "-122G", "T123I", "-124G", "N132K", "I137L", "T158R", "S161T", "D202N", "K204N", "N206T", "K212T", "N273K", "T277I", "T279S", "E312D", "R322S", "N328K", "K329T", "-368L", "-369K", "-382G", "-383S", "-384G", "T385N", "I395V", "N397S", "G413E", "K474R"], "gp41": ["I4L", "R46K", "V72L", "N96S", "D109T", "M118I", "L130T", "E151G", "K154Q", "D232G", "S236P", "L244I", "N287S", "S293I", "Q294R", "V325I", "H331N", "R334K", "I336K", "R337G"], "p17": ["S126N", "Q127P"], "p24": ["S120N", "T210S", "L211P"], "p7": ["R11K", "K41Q"], "pro": ["T12A", "G16E", "I93L"], "rev": ["L21F", "T62N", "L78I", "E111D"], "tat": ["N12R", "T58A", "S87*"], "vif": ["L64I", "R90K", "K122R", "Q127R", "I130T", "N140S", "T154I", "T155K", "K181R", "G182D", "R184K", "N186H"], "vpr": ["E13A", "T19A", "L68M", "S94G"], "vpu": ["S2L", "S3Y", "L4I", "D5I", "I6T", "V7-", "A8-", "V13I", "A15V", "L18I", "K32R", "K35R", "L61Q", "V65A", "E66V", "-69V", "-70E", "-71R", "-72G", "D78N"]}, "labels": {"aa": "INT: A125T, K156N, D278N; RT-p51: T165I, Q207E, E245V, K277R, L283I, A317T; RT-p66: T165I, Q207E, R211K, E245V, K277R, L283I, A317T, N447S, H483Y, E516D; gp120: -3T, P57R, N64D, -106L, -109T, N111Q, N115T, -118S, -119H, -120D, N121S, -122G, T123I, -124G, N132K, I137L, T158R, S161T, D202N, K204N, N206T, K212T, N273K, T277I, T279S, E312D, R322S, N328K, K329T, -368L, -369K, -382G, -383S, -384G, T385N, I395V, N397S, G413E, K474R; gp41: I4L, R46K, V72L, N96S, D109T, M118I, L130T, E151G, K154Q, D232G, S236P, L244I, N287S, S293I, Q294R, V325I, H331N, R334K, I336K, R337G; p17: S126N, Q127P; p24: S120N, T210S, L211P; p7: R11K, K41Q; pro: T12A, G16E, I93L; rev: L21F, T62N, L78I, E111D; tat: N12R, T58A, S87*; vif: L64I, R90K, K122R, Q127R, I130T, N140S, T154I, T155K, K181R, G182D, R184K, N186H; vpr: E13A, T19A, L68M, S94G; vpu: S2L, S3Y, L4I, D5I, I6T, V7-, A8-, V13I, A15V, L18I, K32R, K35R, L61Q, V65A, E66V, -69V, -70E, -71R, -72G, D78N"}}}, {"name": "JN029801", "node_attrs": {"div": 0.17174, "accession": "JN029801", "clade_membership": {"value": "other"}, "country": {"value": "SG"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11SG_HM021"}, "LANL_subtype": {"value": "CRF51_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A416G", "C426T", "T635C", "A797C", "A857C", "T1003C", "C1060A", "G1184A", "C1229T", "G1388A", "C1406T", "G1543A", "T1796C", "A1907G", "A1993T", "A2023G", "A2059G", "T2071C", "T2087C", "G2134A", "C2281T", "C2584T", "G2686A", "A2698G", "A2727G", "T2803C", "A2980G", "A3071G", "C3376T", "A3387G", "A3535G", "C3653A", "C3688T", "T3865G", "C3994T", "C4078A", "A4107C", "T4152C", "A4225G", "G4268A", "T4291C", "A4385G", "G4464A", "C4754T", "G4767A", "G4769A", "A4774G", "G4864A", "A4865C", "G4870A", "C4925A", "C4978A", "A4994C", "G4995T", "G5040A", "A5065G", "T5072C", "G5128A", "A5233G", "T5292C", "G5412T", "A5462G", "T5467A", "T5483C", "C5552A", "T5576C", "-5611T", "-5612C", "-5613C", "A5626G", "A5643G", "A5704T", "G5717A", "A5718G", "T5787A", "G5799T", "C5801T", "C5806A", "T5807G", "-5809G", "-5810G", "-5811G", "C5831T", "T5836G", "G5842A", "T5860-", "C5862-", "A5946G", "A6020T", "G6024C", "A6065T", "T6072C", "T6169A", "-6170T", "A6173G", "A6191T", "-6201T", "A6230G", "T6287C", "A6325G", "A6327G", "A6425G", "G6463A", "A6535G", "A6706G", "A6723T", "C6752A", "G6809A", "A6810G", "A6841G", "A6855G", "C6864T", "A6884G", "C6885T", "A6936G", "C6951A", "-6961C", "-6964G", "A6966G", "-6967A", "-6968T", "-6969G", "-6970A", "-6971A", "-6972A", "-6973A", "-6974T", "-6975G", "-6976T", "-6977G", "-6978A", "-6979C", "-6980G", "-6981G", "-6982G", "-6983G", "-6984C", "-6985A", "-6994T", "-6995G", "-6996G", "-6997G", "G7055A", "T7059C", "T7144G", "A7148G", "A7158G", "G7168T", "G7195A", "G7212A", "G7235A", "C7289G", "G7291A", "T7308C", "T7325A", "G7339A", "A7366G", "A7396G", "A7456G", "T7466C", "G7534A", "A7604G", "G7633T", "T7642G", "G7668A", "G7735A", "G7773A", "G7790A", "A7796T", "C8009T", "A8011G", "C8020T", "A8076G", "T8215C", "A8228G", "A8306C", "G8945T"], "INT": ["L101I", "K111T", "V126A", "V165I", "I204V", "S230N"], "RT-p51": ["K211R", "I326V", "K431R"], "RT-p66": ["I326V", "K431R", "Q520K"], "gp120": ["K31R", "I56L", "N71Y", "V73A", "-106A", "N107K", "Q108F", "-109E", "N113Y", "I116V", "N117S", "-118G", "-119I", "-120G", "-122I", "-124D", "I126V", "Y145H", "D157G", "K159Q", "N160T", "S162E", "T191A", "Y290F", "Q300K", "E319R", "N327-", "Q334R", "S337L", "T344V", "K361R", "T366N", "-384D", "T385I", "G401R", "V402A", "N432D", "N435S", "E438D", "M447I", "S453N", "V461I", "Q479E"], "gp41": ["V2A", "F8I", "T101A", "Q110Y", "D113E", "R122K", "D148E", "S157N", "D163N", "T165S", "H258R", "I309V", "I318V"], "nef": ["E201D"], "p17": ["L34I", "Y79F"], "p24": ["I91T", "T110N"], "p7": ["R26K"], "pro": ["N37D", "E65D"], "rev": ["L13I", "A54V", "I55V", "R58W"], "tat": ["K29R", "C31S", "V36A", "P59H", "V67A"], "vif": ["E61K", "K63R", "G93D", "S95N", "D113E", "Q136P", "A137S", "A152T", "K160R"], "vpr": ["E48D", "I63T"], "vpu": ["I33L", "R37K", "D60E", "E62A", "E63A", "L67R", "-68G", "A75V", "W77G", "V79I"]}, "labels": {"aa": "INT: L101I, K111T, V126A, V165I, I204V, S230N; RT-p51: K211R, I326V, K431R; RT-p66: I326V, K431R, Q520K; gp120: K31R, I56L, N71Y, V73A, -106A, N107K, Q108F, -109E, N113Y, I116V, N117S, -118G, -119I, -120G, -122I, -124D, I126V, Y145H, D157G, K159Q, N160T, S162E, T191A, Y290F, Q300K, E319R, N327-, Q334R, S337L, T344V, K361R, T366N, -384D, T385I, G401R, V402A, N432D, N435S, E438D, M447I, S453N, V461I, Q479E; gp41: V2A, F8I, T101A, Q110Y, D113E, R122K, D148E, S157N, D163N, T165S, H258R, I309V, I318V; nef: E201D; p17: L34I, Y79F; p24: I91T, T110N; p7: R26K; pro: N37D, E65D; rev: L13I, A54V, I55V, R58W; tat: K29R, C31S, V36A, P59H, V67A; vif: E61K, K63R, G93D, S95N, D113E, Q136P, A137S, A152T, K160R; vpr: E48D, I63T; vpu: I33L, R37K, D60E, E62A, E63A, L67R, -68G, A75V, W77G, V79I"}}}]}, {"name": "other_NODE_0000026", "node_attrs": {"div": 0.13202, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-214A", "-217A", "-256G", "T571A", "A1109G", "C1253T", 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V288A, R291A, Y302H, E304N, N306S, E312N, K322G, N328-, Q334K, P335Q, L341P, H347S, T360S, G401E, Q404K, N416K, V418S, N446D, K448R, Q462K; gp41: F9L, S42N, M54L, D148E, W326G; nef: I194V; p24: S225G; p6: P24S; pro: E35D; rev: R53H, A54S, S67P, T68A; vif: K37G, I180T, E185G, N186S, P187H; vpr: G86Q, G89A; vpu: T2Q, L67M, -68G"}}, "children": [{"name": "other_NODE_0000027", "node_attrs": {"div": 0.192, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T341G", "C362T", "C379A", "A386G", "A388G", "A431G", "C462A", "T473C", "C476T", "A491G", "T506C", "A516T", "C522G", "A523C", "G524A", "A533C", "T536C", "A562G", "A584C", "C590G", "A606G", "G608A", "G629A", "T635C", "T641C", "A645G", "A647G", "A699C", "G706A", "G709A", "T734G", "G743A", "T746C", "T789C", "A810G", "C827T", "T852A", "C902T", "A920G", "C926A", "C950T", "A968G", "T978C", "A1002G", "C1005G", "T1040C", "T1055C", "T1094C", "G1173A", "T1174C", "C1211T", "G1256A", "A1307G", "A1319T", "C1331T", 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"T5707A", "T5708G", "T5731A", "A5738C", "G5747T", "G5775C", "A5790G", "T5826C", "C5827G", "T5828A", "G5845A", "-5861T", "G5864-", "A5865-", "A5866-", "A5911C", "C5924T", "A5955T", "T5956C", "C5958A", "T5964G", "G5972A", "C5974T", "C6007T", "A6020G", "A6024T", "C6026A", "A6065G", "G6086A", "C6110G", "C6116T", "G6133A", "T6134C", "T6160G", "T6163C", "A6164T", "-6170T", "-6172G", "A6192C", "-6219A", "-6220A", "A6223-", "G6224-", "A6257T", "G6260A", "G6267A", "A6275G", "A6276T", "A6278C", "G6280A", "C6286T", "T6299A", "A6303C", "C6305A", "A6316G", "T6325G", "A6329G", "T6334C", "A6335T", "G6345T", "A6349G", "T6361C", "T6373C", "A6430G", "C6446A", "T6460A", "A6525G", "G6532A", "A6535G", "A6544C", "T6562C", "A6573G", "A6584C", "C6599T", "C6601T", "A6604G", "C6619T", "C6632T", "T6634A", "T6641A", "A6654C", "C6660T", "A6685G", "A6695T", "C6707T", "C6708G", "A6709G", "A6712G", "C6713A", "A6714G", "T6719G", "C6721A", "A6734G", "T6735A", "G6743A", "A6757C", "G6774T", "C6777A", "T6787C", "A6790C", "A6798G", "G6809A", "A6810T", "C6826A", "-6830G", "-6831A", "-6832A", "-6833A", "-6834A", "-6835T", "A6848G", "A6856G", "A6884T", "C6885T", "A6894C", "T6895A", "A6905G", "A6935C", "A6937G", "G6954A", "-6965A", "-6966C", "-6967T", "-6968T", "-6969G", "-6970G", "-6971A", "-6972G", "-6974A", "-6975G", "-6976C", "-6977A", "-6978A", "-6979T", "-6980T", "-6981G", "-6982G", "-6989A", "-6990C", "-6992G", "-6993C", "-6994T", "-6995G", "-6996A", "-6997T", "-6998G", "-6999G", "-7000C", "-7002A", "-7005A", "-7006A", "T7009A", "C7018A", "G7026A", "A7032G", "T7047G", "G7048A", "C7064A", "A7095T", "C7134T", "T7150-", "A7152G", "T7153C", "T7159C", "A7160G", "A7161G", "-7162A", "-7164C", "G7168A", "A7186G", "A7246G", "C7250T", "A7273T", "G7276A", "A7373C", "A7375C", "A7398T", "A7399G", "T7403C", "T7433C", "A7439C", "G7440A", "G7441A", "A7447T", "T7462C", "A7471G", "G7517C", "A7522G", "A7533G", "G7534T", "C7561T", "C7603T", "T7604A", "G7631T", "G7633C", "G7640C", "T7642G", "A7666G", "C7702A", "A7705G", "G7712A", "A7765G", "G7773A", "T7774C", "C7775T", "A7820T", "G7846A", "T7867C", "G7868A", "C7898A", "G7929A", "C7941A", "A7962G", "C7988A", "A7989G", "A7998G", "G8001C", "T8007C", "A8018C", "T8035C", "C8065T", "G8105A", "G8130A", "G8144A", "A8152G", "T8159G", "T8164C", "C8167T", "T8197G", "T8203C", "T8209C", "C8223T", "A8227T", "G8254A", "G8255A", "T8265C", "T8268C", "A8272G", "G8276A", "T8279G", "T8290C", "C8320A", "T8321G", "T8322C", "A8342G", "A8364C", "G8365T", "T8366A", "G8368-", "T8369-", "G8373C", "T8374G", "G8387A", "A8403G", "G8404A", "C8406A", "A8408G", "C8422A", "A8425-", "A8426-", "G8427-", "A8447G", "A8455C", "A8457G", "A8461G", "G8476T", "C8477T", "G8479A", "-8491A", "T8495C", "A8503C", "A8531G", "C8543T", "T8558C", "G8561A", "T8585C", "T8597A", "A8617G", "A8643G", "T8666G", "T8687C", "G8717C", "G8753A", "A8754T", "C8755G", "A8777G", "G8784C", "C8790A", "C8791G", "A8795T", "A8804G", "G8822A", "T8835C", "G8846A", "A8847T", "A8858G", "G8864T", "A8870G", "A8886G", "A8893G", "G8894A", "C8906T", "A8909C", "C8913T", "A8918C"], "INT": ["K14R", "I113V", "T124N", "K156N", "D167E", "K211R", "I234L", "G283S"], "RT-p51": ["I5V", "E6D", "K11T", "V118I", "D123N", "I135T", "F214L", "E245K", "E297K", "A304E", "I329L", "F346Y", "K385R", "K388R", "T403I"], "RT-p66": ["I5V", "E6D", "K11T", "V118I", "D123N", "I135T", "F214L", "Q245K", "E297K", "A304E", "I329L", "F346Y", "K385R", "K388R", "T403I", "N447S", "E449D", "S468N", "N519S", "S554A"], "gp120": ["E4N", "N5-", "E19D", "D34V", "T35K", "V37G", "V40I", "I56V", "P57V", "L58M", "N71D", "E78K", "Q86E", "K93R", "N102K", "T104S", "-106L", "-112N", "N113T", "-114T", "-116S", "-117P", "T135S", "E136K", "R138K", "D139N", "K141V", "K142Q", "E144D", "Y149N", "K150T", "L151I", "D157E", "R164M", "A176T", "L198I", "D202E", "K224R", "Q230H", "E240G", "I243V", "I244L", "L249F", "S263T", "N267T", "T269I", "I281L", "P285W", "Q287R", "A288S", "F289V", "D294E", "D297N", "G307V", "T308G", "K315R", "E319I", "H324Q", "-326E", "I332V", "T344L", "S347T", "R351G", "K361Q", "W367Y", "-368T", "-369W", "-371S", "-372N", "-373W", "-374T", "-375A", "-376D", "-377G", "-378N", "-379E", "-380T", "-381G", "-382N", "T385-", "R391K", "K393R", "M398R", "N414I", "S418T", "T427I", "-433S", "N435G", "T436S", "K474R"], "gp41": ["I24L", "Q32L", "R46Q", "V72L", "K77S", "S101T", "E110Y", "D113Q", "E119Q", "N133T", "E137K", "S157N", "I173L", "A189T", "Q199K", "E220G", "Q229R", "D232G", "R233T", "V235T", "N239H", "A268T", "R276H", "A281T", "W286G", "N298K", "T307I", "V321A", "V322A", "A325I", "L340A"], "nef": ["S8L", "S9M", "I10R", "V11-", "R21E", "A27E", "E28G", "G29-", "E38A", "K39E", "H40R", "S45I", "S46N", "D54A", "F85L", "K92R", "I101V", "Q125H", "V148L", "P150R", "M168I", "S169C", "E174D", "M182V", "K184R", "R191F"], "p1": ["K10R"], "p17": ["K18R", "K26R", "L34I", "E55D", "Q63A", "P66S", "K76R", "R91G", "I104V", "T122P", "S124N", "S125N"], "p2": ["-10S", "-12T"], "p24": ["I27V", "S41T", "I91V", "P92A", "V148T", "E180D", "K203R"], "p6": ["L1P", "K31-"], "p7": ["R11K", "R26K", "T50S"], "pro": ["I13V", "H69K", "Q92K"], "rev": ["I21F", "S25N", "A47E", "Q51H", "E57A", "C63H", "P72S", "L73F", "S86N", "S99N", "I102V", "V104G", "S106P", "P107S", "*117E"], "tat": ["N7R", "N12K", "A21P", "K24N", "V36I", "T58A", "K63P", "T64P", "A74T", "K85E"], "vif": ["K36S", "K63I", "L64I", "D78E", "R92K", "S95R", "I128V", "Q136P"], "vpr": ["N28S", "G41S", "E55A", "I84T", "Q86H"], "vpu": ["S3P", "V7I", "A16V", "F27L", "E29Q", "R31L", "L34R", "L42I", "D44A", "R47I", "E56D", "D60E", "E62A", "E63A", "E66D", "L74D", "D80N"]}, "labels": {"aa": "INT: K14R, I113V, T124N, K156N, D167E, K211R, I234L, G283S; RT-p51: I5V, E6D, K11T, V118I, D123N, I135T, F214L, E245K, E297K, A304E, I329L, F346Y, K385R, K388R, T403I; RT-p66: I5V, E6D, K11T, V118I, D123N, I135T, F214L, Q245K, E297K, A304E, I329L, F346Y, K385R, K388R, T403I, N447S, E449D, S468N, N519S, S554A; gp120: E4N, N5-, E19D, D34V, T35K, V37G, V40I, I56V, P57V, L58M, N71D, E78K, Q86E, K93R, N102K, T104S, -106L, -112N, N113T, -114T, -116S, -117P, T135S, E136K, R138K, D139N, K141V, K142Q, E144D, Y149N, K150T, L151I, D157E, R164M, A176T, L198I, D202E, K224R, Q230H, E240G, I243V, I244L, L249F, S263T, N267T, T269I, I281L, P285W, Q287R, A288S, F289V, D294E, D297N, G307V, T308G, K315R, E319I, H324Q, -326E, I332V, T344L, S347T, R351G, K361Q, W367Y, -368T, -369W, -371S, -372N, -373W, -374T, -375A, -376D, -377G, -378N, -379E, -380T, -381G, -382N, T385-, R391K, K393R, M398R, N414I, S418T, T427I, -433S, N435G, T436S, K474R; gp41: I24L, Q32L, R46Q, V72L, K77S, S101T, E110Y, D113Q, E119Q, N133T, E137K, S157N, I173L, A189T, Q199K, E220G, Q229R, D232G, R233T, V235T, N239H, A268T, R276H, A281T, W286G, N298K, T307I, V321A, V322A, A325I, L340A; nef: S8L, S9M, I10R, V11-, R21E, A27E, E28G, G29-, E38A, K39E, H40R, S45I, S46N, D54A, F85L, K92R, I101V, Q125H, V148L, P150R, M168I, S169C, E174D, M182V, K184R, R191F; p1: K10R; p17: K18R, K26R, L34I, E55D, Q63A, P66S, K76R, R91G, I104V, T122P, S124N, S125N; p2: -10S, -12T; p24: I27V, S41T, I91V, P92A, V148T, E180D, K203R; p6: L1P, K31-; p7: R11K, R26K, T50S; pro: I13V, H69K, Q92K; rev: I21F, S25N, A47E, Q51H, E57A, C63H, P72S, L73F, S86N, S99N, I102V, V104G, S106P, P107S, *117E; tat: N7R, N12K, A21P, K24N, V36I, T58A, K63P, T64P, A74T, K85E; vif: K36S, K63I, L64I, D78E, R92K, S95R, I128V, Q136P; vpr: N28S, G41S, E55A, I84T, Q86H; vpu: S3P, V7I, A16V, F27L, E29Q, R31L, L34R, L42I, D44A, R47I, E56D, D60E, E62A, E63A, E66D, L74D, D80N"}}, "children": [{"name": "MT712388", "node_attrs": {"div": 0.20306000000000002, "accession": "MT712388", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "HL18S17"}, "LANL_subtype": {"value": "CRF107_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A576G", "G579A", "A585G", "C586T", "G599A", "A1007G", "C1098T", "A1415C", "G1726A", "T1790C", "T1895C", "T1978C", "T2066C", "G2518A", "G2602A", "T2638C", "G2722A", "T2735C", "T2824A", "A2951G", "G3168A", "A3196G", "A3385G", "T3545C", "T3820C", "G3859A", "G4183A", "C4381T", "G4464A", "A4495G", "G4818A", "A4845G", "A5155G", "A5159G", "T5162C", "A5167G", "C5168G", "G5179A", "A5247T", "A5432G", "T5467A", "C5572A", "T5654G", "C5679T", "A5784G", "T5788C", "T5789A", "C5792A", "C5795A", "C5797T", "A5804C", "-5812G", "-5813T", "-5814T", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5907G", "C5911T", "C5916A", "A6132G", "A6157G", "A6158G", "A6168C", "A6179G", "C6189A", "C6190T", "G6195C", "C6198T", "-6200A", "-6201G", "-6202T", "-6203C", "-6204C", "-6205T", "-6206C", "-6207A", "-6208G", "-6209A", "-6210T", "-6211G", "-6212A", "-6213T", "-6214G", "-6215C", "-6216A", "-6217G", "-6218G", "A6221-", "G6227-", "A6228-", "A6229-", "C6253T", "A6260C", "A6270G", "G6274A", "G6311T", "G6380A", "G6525C", "G6526A", "C6528A", "A6529G", "G6530A", "T6531A", "A6532T", "G6577C", "G6647A", "A6781T", "A6801G", "G6821A", "-6836A", "-6838G", "A6841C", "A6842-", "C6843T", "-6955G", "-6973T", "G7004A", "-7150C", "C7397A", "G7405A", "G7753A", "C7939T", "C8062T", "G8141A", "A8143C", "A8276T", "C8336A", "C8364T", "A8396G", "G8421A", "G8528A", "A8701T"], "INT": ["S230N"], "RT-p51": ["T286A", "R358K"], "RT-p66": ["T286A", "R358K"], "gp120": ["K18R", "T21N", "K102E", "N105T", "-107K", "-109D", "-115I", "-118Q", "-119M", "-120M", "-121Q", "-122E", "E125-", "K136Q", "N139G", "V153L", "S215-", "T330-"], "gp41": ["L32M", "E280N", "I325F", "L345I"], "nef": ["E27K", "Y120F"], "p24": ["P123S"], "p6": ["R16K"], "rev": ["P31S", "G98E", "N99H"], "tat": ["K19R", "C31S", "I36M", "Q66K", "P77L"], "vif": ["E78N", "I87V", "N190S"], "vpr": ["T19A", "L22V", "E48V"], "vpu": ["V16G"]}, "labels": {"aa": "INT: S230N; RT-p51: T286A, R358K; RT-p66: T286A, R358K; gp120: K18R, T21N, K102E, N105T, -107K, -109D, -115I, -118Q, -119M, -120M, -121Q, -122E, E125-, K136Q, N139G, V153L, S215-, T330-; gp41: L32M, E280N, I325F, L345I; nef: E27K, Y120F; p24: P123S; p6: R16K; rev: P31S, G98E, N99H; tat: K19R, C31S, I36M, Q66K, P77L; vif: E78N, I87V, N190S; vpr: T19A, L22V, E48V; vpu: V16G"}}}, {"name": "MT712389", "node_attrs": {"div": 0.2072, "accession": "MT712389", "clade_membership": {"value": "other"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "HL18S214"}, "LANL_subtype": {"value": "CRF107_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A412G", "G455A", "A500C", "C531T", "T539C", "A617G", "T885C", "A965C", "C1060A", "C1137T", "A1142G", "A1241G", "T1262C", "A1559G", "A1660G", "T1676C", "G1845A", "A1897G", "A1933G", "A2057C", "G2065A", "T2086G", "A2386C", "T2494C", "A2612C", "G2632A", "G2683A", "G2725A", "A2727C", "T2854A", "G2876A", "A3163G", "G3307A", "G3685A", "G3834A", "A3913G", "A4051G", "C4140T", "G4294A", "C4496A", "G4568A", "C4679A", "A4684G", "C4690A", "T4698G", "T4701G", "T4702G", "C4820A", "T4916C", "C4937T", "C4978A", "G4981A", "A4990T", "G4995T", "A5065G", "G5099A", "T5102C", "A5124G", "C5125G", "A5128T", "C5133T", "G5143-", "C5144-", "C5145-", "A5146-", "T5147-", "A5148-", "T5152C", "G5153C", "T5170G", "A5191G", "T5333C", "C5356A", "C5359T", "A5444G", "T5454C", "G5484A", "C5487T", "T5577A", "A5589C", "G5620C", "C5698T", "G5729A", "T5787A", "G5791T", "C5801T", "G5802T", "A5805C", "C5806A", "-5809G", "-5810G", "-5811G", "A5958G", "A6030G", "T6109A", "A6112G", "T6144G", "C6145T", "G6160A", "G6175T", "A6177C", "A6180C", "C6183A", "A6186C", "C6192T", "C6196T", "A6197C", "-6218C", "A6220G", "-6222T", "-6223G", "-6224C", "-6225A", "-6226G", "G6269A", "C6318A", "T6351G", "C6381T", "T6412C", "A6581G", "T6652C", "G6716T", "A6777G", "A6818G", "A6837-", "G6948A", "-6964T", "-6973G", "T6997C", "T7014C", "T7102G", "A7148-", "A7149-", "A7151C", "G7152T", "C7156A", "A7162G", "A7163T", "T7165C", "T7180A", "A7275G", "G7339A", "G7689A", "C7825T", "A8076G", "G8079A", "C8095A", "G8102C", "C8145T", "G8219A", "A8273G", "C8294A", "G8405A", "T8492C", "G8598T", "G8605C", "C8640A", "T8646C", "C8688A"], "INT": ["R20K", "T122I", "L241I", "A265T"], "RT-p51": ["K173Q", "K211T", "V261I"], "RT-p66": ["K173Q", "K211T", "V261I"], "gp120": ["K35R", "E59G", "-109T", "N112T", "T114I", "-115S", "S116P", "P117Q", "-118M", "-119Q", "P155Q", "I166R", "T176V", "S365N", "S370R", "I387T", "N432L"], "gp41": ["G129D", "H258R", "R259H", "V267L", "T281I", "A306T", "R324G", "H331N"], "nef": ["D86Y", "S88T", "L100I", "Y102H", "H116N"], "p24": ["T110N"], "pro": ["G16E", "M89I"], "rev": ["F21Y", "N25T", "L83I", "C85S"], "tat": ["N23S", "K71N"], "vif": ["K33R", "A35D", "W38G", "F39G", "P131H", "R132K", "Y135F", "A137S", "K160R", "T180G", "K181M", "H183Y", "S186-", "H187-", "M189T"], "vpr": ["D7G", "Q8H", "P10L", "E13D", "P14-", "Y15-", "E17Q", "T84N", "P85L"], "vpu": ["E5Q", "R41K", "A62S"]}, "labels": {"aa": "INT: R20K, T122I, L241I, A265T; RT-p51: K173Q, K211T, V261I; RT-p66: K173Q, K211T, V261I; gp120: K35R, E59G, -109T, N112T, T114I, -115S, S116P, P117Q, -118M, -119Q, P155Q, I166R, T176V, S365N, S370R, I387T, N432L; gp41: G129D, H258R, R259H, V267L, T281I, A306T, R324G, H331N; nef: D86Y, S88T, L100I, Y102H, H116N; p24: T110N; pro: G16E, M89I; rev: F21Y, N25T, L83I, C85S; tat: N23S, K71N; vif: K33R, A35D, W38G, F39G, P131H, R132K, Y135F, A137S, K160R, T180G, K181M, H183Y, S186-, H187-, M189T; vpr: D7G, Q8H, P10L, E13D, P14-, Y15-, E17Q, T84N, P85L; vpu: E5Q, R41K, A62S"}}}]}, {"name": "other_NODE_0000028", "node_attrs": {"div": 0.14734, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T749A", "A944T", "T974C", "G980A", "T1091C", "C1182T", "A1199G", "C1230A", "A1237T", "T1263A", "A1292C", "C1354G", "A1355G", "A1430G", "A1488G", "A1489G", "A1492C", "G1532A", "A1664G", "A1725G", "T1730C", "C1741T", "A1745C", "A1756C", "A2155G", "G2198A", "T2199C", "C2626A", "C2714G", "T3303C", "G3364A", "G3695T", "C3856T", "A3916G", "T4042C", "A4069C", "C4078A", "A4145G", "A4549G", "T4667C", "C4679T", "G4697A", "T4715C", "C4725A", "A4726G", "A4766G", "G4786A", 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["N11A", "I13-"], "p24": ["E71D", "Y169F", "S178T", "E187D", "A208G"], "p6": ["R16G", "T21I", "T23P", "P30Q"], "p7": ["N8G"], "tat": ["W32Y"], "vif": ["Q47R", "E61D", "R67K", "Q73H", "K77R", "H83Q", "Q91K", "I98V", "H110Y", "D117E", "Q127H", "R130S", "K151T", "T154I", "K167R"], "vpr": ["P85R"], "vpu": ["L18I"]}, "labels": {"aa": "RT-p51: V35T, D177E, Q207E, E245Q, A272P; RT-p66: V35T, D177E, Q207E, A272P, A534S; gp120: S3T, V80I, V172T, T191A, N251D, K334N, P336S, I387T, I424L, N437T; gp41: M7V, L135I, T165S; nef: R35Q, D50A, F135Y, C138T, K155E; p2: N11A, I13-; p24: E71D, Y169F, S178T, E187D, A208G; p6: R16G, T21I, T23P, P30Q; p7: N8G; tat: W32Y; vif: Q47R, E61D, R67K, Q73H, K77R, H83Q, Q91K, I98V, H110Y, D117E, Q127H, R130S, K151T, T154I, K167R; vpr: P85R; vpu: L18I"}}, "children": [{"name": "other_NODE_0000029", "node_attrs": {"div": 0.16266, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C153T", "-159T", "-167G", "A215G", "A224G", "T227A", "G256A", 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-384D, K462E, E464K; gp41: I4L, H209R, T212A, V322L, A325T; nef: K105R, E108D, Q170L; p17: K15R, L34I, R91K, K95R, T115A; p2: V7A, -12V; p24: G116Q; p6: K33E, E34G, L50S; p7: G4S, R7K, Q9P, K41R; pro: R57K, Q61N, E65D; rev: A15T, I21L, N30S, C63Y; tat: N7K, N12K, K29R, Y32F, S61D, P68S; vif: F39Y; vpu: E5V, V7L, F27L"}}, "children": [{"name": "other_NODE_0000030", "node_attrs": {"div": 0.22447, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T258C", "A265-", "-304A", "-305A", "A369G", "A386G", "G424A", "A425G", "A497T", "A516C", "G518A", "A527G", "C537T", "T539G", "A585G", "C586T", "C590T", "G615A", "A686G", "A692-", "G717A", "T718G", "T746C", "C747T", "G755A", "C872T", "C897T", "C902T", "T1037C", "A1046T", "A1101G", "C1175T", "T1244C", "T1253C", "G1260T", "C1261G", "A1278G", "A1279G", "G1404A", "A1415T", "C1440A", "A1442T", "G1474A", "C1535T", "G1543A", "C1613T", "A1670G", "T1681C", "T1682C", "A1691G", "G1773A", "T1796C", "C1828A", "A1840G", 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"A7138G", "T7144A", "T7147C", "T7153C", "T7156G", "-7162C", "T7165A", "C7171A", "A7177G", "A7234G", "T7243C", "G7244A", "C7250T", "G7311C", "T7321C", "A7375G", "A7376G", "T7411A", "G7426A", "C7463A", "G7517C", "G7519A", "A7532G", "A7533G", "A7590C", "T7615C", "A7620G", "G7633A", "T7642A", "G7660A", "G7668A", "A7693C", "A7706C", "G7712A", "A7713C", "G7720A", "G7726A", "G7729A", "G7754C", "G7759A", "C7762T", "A7765G", "C7775T", "C7801T", "A7818G", "G7862A", "A7943C", "G7995A", "C8005A", "A8006G", "T8008A", "A8019G", "C8080A", "A8104G", "G8105A", "C8106A", "T8159G", "C8171A", "A8172G", "G8173T", "A8227T", "G8242A", "G8255A", "T8267C", "T8281G", "T8348G", "G8349A", "G8350A", "A8363G", "A8364-", "G8365-", "T8366-", "A8367-", "G8368-", "T8369-", "T8371-", "G8372-", "G8373-", "T8374-", "T8375-", "G8388A", "G8402A", "A8409G", "A8426G", "G8429A", "G8436C", "T8440C", "A8441G", "G8453A", "C8460T", "A8465G", "A8469C", "C8471G", "T8483C", "A8486G", "G8487C", "A8489T", "-8491G", "T8492C", "A8531G", "G8534A", "T8582C", "G8590A", "T8594A", "T8603C", "C8607T", "A8608T", "C8640T", "C8651T", "C8652A", "A8660G", "C8669A", "C8676T", "C8688A", "A8739G", "A8754T", "C8755G", "T8835C", "C8867T", "G8873A", "A8874G", "G8882A", "A8886C", "T8887A", "C8903T", "T8914G", "C8916A", "A8924G", "A8930C", "G8936A", "C8948T", "G8970-", "T8972-", "T8973-", "C8975-", "T8976-", "A8977-", "C8978-", "A8979-", "G9015A"], "INT": ["V31I", "L74I", "I84L", "S119P", "G134S", "K136Q", "I204L", "T206S", "I234V", "D256E"], "RT-p51": ["E36A", "A39E", "S48T", "V60I", "T200A", "E207D", "K211R", "I244V", "Q245T", "D250E", "P294Q", "V317A", "S322T", "I329V", "M357T", "A376S", "T377L", "Q394L", "K431T"], "RT-p66": ["E36A", "A39E", "S48T", "V60I", "T200A", "E207D", "K211R", "I244V", "Q245T", "D250E", "P294Q", "V317A", "S322T", "I329V", "M357T", "A376S", "T377L", "Q394L", "K431T", "A446S", "L452K", "Q480H", "L491S", "L517I"], "gp120": ["S1N", "A2V", "T3R", "E4G", "T21K", "P57K", "K69E", "N71D", "H77Q", "E78Q", "N105-", "N108-", "T110-", "-114S", "-115N", "-118S", "-119T", "-120I", "-121R", "-122E", "-123K", "-124G", "I137V", "E144V", "Y145H", "V153I", "I156L", "D157-", "T172A", "S181T", "F195Y", "D202N", "K212N", "E240K", "E247K", "A253T", "N261T", "S263P", "E265Q", "H280R", "A288T", "T292A", "Q300E", "N312E", "K315Q", "Q316K", "V317I", "A318G", "G322A", "E323Q", "-326P", "I332N", "N334T", "S336H", "M345T", "R351M", "W367Y", "-368N", "-369S", "S370T", "-371Y", "-372N", "-382N", "-383N", "L388I", "K404R", "S412A", "N414V", "K416E", "S418R", "N434T"], "gp41": ["V2A", "G3L", "L4-", "T25A", "L54M", "V72L", "K77G", "N96T", "K106R", "D113E", "E119Q", "R122K", "L130F", "I135L", "E137T", "E151Q", "K172R", "V187I", "R231K", "N239S", "A268K", "W286G", "Q290S", "G326W"], "nef": ["G3N", "S8-", "S9-", "I10-", "V11-", "V16I", "M20I", "T23A", "A32P", "V33A", "H40Y", "I43L", "A49P", "A50G", "G83S", "H89F", "Q104K", "H116N", "I133V", "T138C", "D151E", "R178G", "M182Q"], "p17": ["K12E", "R30K", "T84V", "V94I", "V128S"], "p2": ["Q6T"], "p24": ["I124V", "A177C", "N183G", "G225S"], "p6": ["L1P", "Q26-", "D32N", "S50*"], "p7": ["R3K", "R26K"], "pro": ["L63S", "I72T"], "rev": ["E32A", "H53S", "S54T", "L78I", "S86E", "V104G", "A108E", "V109L"], "tat": ["R78S"], "vif": ["R19N", "N22K", "Y30H", "V51T", "D61E", "K67I", "H73Q", "D78E", "Q83H", "K91L", "D101G", "L109M", "Y110H", "S116T", "E117D", "I124L", "H127F", "I128K", "T155K", "T170V", "K181R", "G182D", "G185E"], "vpr": ["N28Q", "E55S", "I63T", "I70V", "I84L"], "vpu": ["V10A", "V14I", "K35R", "K38R", "R41W", "D44E", "L61T", "V65E", "E66T", "G68-", "-69V", "-70D", "-71M", "A75G", "P76L", "W77L", "D78A", "D80N"]}, "labels": {"aa": "INT: V31I, L74I, I84L, S119P, G134S, K136Q, I204L, T206S, I234V, D256E; RT-p51: E36A, A39E, S48T, V60I, T200A, E207D, K211R, I244V, Q245T, D250E, P294Q, V317A, S322T, I329V, M357T, A376S, T377L, Q394L, K431T; RT-p66: E36A, A39E, S48T, V60I, T200A, E207D, K211R, I244V, Q245T, D250E, P294Q, V317A, S322T, I329V, M357T, A376S, T377L, Q394L, K431T, A446S, L452K, Q480H, L491S, L517I; gp120: S1N, A2V, T3R, E4G, T21K, P57K, K69E, N71D, H77Q, E78Q, N105-, N108-, T110-, -114S, -115N, -118S, -119T, -120I, -121R, -122E, -123K, -124G, I137V, E144V, Y145H, V153I, I156L, D157-, T172A, S181T, F195Y, D202N, K212N, E240K, E247K, A253T, N261T, S263P, E265Q, H280R, A288T, T292A, Q300E, N312E, K315Q, Q316K, V317I, A318G, G322A, E323Q, -326P, I332N, N334T, S336H, M345T, R351M, W367Y, -368N, -369S, S370T, -371Y, -372N, -382N, -383N, L388I, K404R, S412A, N414V, K416E, S418R, N434T; gp41: V2A, G3L, L4-, T25A, L54M, V72L, K77G, N96T, K106R, D113E, E119Q, R122K, L130F, I135L, E137T, E151Q, K172R, V187I, R231K, N239S, A268K, W286G, Q290S, G326W; nef: G3N, S8-, S9-, I10-, V11-, V16I, M20I, T23A, A32P, V33A, H40Y, I43L, A49P, A50G, G83S, H89F, Q104K, H116N, I133V, T138C, D151E, R178G, M182Q; p17: K12E, R30K, T84V, V94I, V128S; p2: Q6T; p24: I124V, A177C, N183G, G225S; p6: L1P, Q26-, D32N, S50*; p7: R3K, R26K; pro: L63S, I72T; rev: E32A, H53S, S54T, L78I, S86E, V104G, A108E, V109L; tat: R78S; vif: R19N, N22K, Y30H, V51T, D61E, K67I, H73Q, D78E, Q83H, K91L, D101G, L109M, Y110H, S116T, E117D, I124L, H127F, I128K, T155K, T170V, K181R, G182D, G185E; vpr: N28Q, E55S, I63T, I70V, I84L; vpu: V10A, V14I, K35R, K38R, R41W, D44E, L61T, V65E, E66T, G68-, -69V, -70D, -71M, A75G, P76L, W77L, D78A, D80N"}}, "children": [{"name": "MH986017", "node_attrs": {"div": 0.24377000000000001, "accession": "MH986017", "clade_membership": {"value": "other"}, "country": {"value": "BR"}, "date": {"value": 2008.0}, "Strain_name": {"value": "BRMT2526"}, "LANL_subtype": {"value": "CRF81_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C189T", "G224A", "C264-", "A371C", "A380G", "A412G", "G520A", "A571T", "T575C", "G629A", "-692C", "A866G", "G911T", "T978A", "A1002G", "C1005G", "A1242G", "C1243T", "G1354C", "C1444-", "A1445-", "A1446-", "A1494C", "T1501C", "A1586G", "A1742G", "C1825A", "C1826A", "A1851T", "A1861G", "A2075C", "T2087C", "C2149G", "G2212T", "C2575T", "G2602T", "C2671T", "A2690C", "A2809G", "A2818G", "A2884G", "G2887A", "G3099A", "G3162A", "G3170A", "G3226C", "A3295G", "A3307C", "T3566C", "A3583T", "G3686A", "A3781G", "A3816G", "G3825A", "T3946C", "A4150G", "G4183T", "A4213G", "G4252A", "G4263A", "T4288G", "T4328-", "T4435C", "C4665T", "C4667T", "G4677A", "A4773G", "G4818A", "A4966T", "A4993G", "T5206C", "T5260C", "T5263C", "T5356A", "T5475C", "A5496C", "C5513T", "C5548A", "T5578G", "T5618C", "G5620A", "A5689C", "C5797-", "T5798-", "-5800T", "-5801T", "A5825G", "A6009G", "T6109C", "A6136G", "-6172T", "G6175C", "T6178A", "A6182G", "A6185-", "T6187-", "C6198T", "T6199C", "-6200A", "-6201G", "-6202G", "-6203G", "-6204A", "-6206A", "-6207A", "-6208C", "-6210A", "-6211C", "-6212T", "-6214T", "-6215A", "-6217C", "-6219T", "A6223G", "A6253G", "G6263C", "A6275C", "A6279C", "C6287A", "G6323A", "A6326T", "A6329G", "T6337G", "T6409C", "A6464G", "A6574G", "G6611A", "A6636C", "G6638A", "A6654C", "C6660T", "T6760A", "G6774A", "A6775C", "A6788G", "A6800G", "A6801C", "C6824T", "A6936G", "-6964G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975G", "-6976T", "-6977G", "-6978A", "-6979C", "-6980A", "-6981G", "-6982C", "-6983A", "-6984C", "-6985A", "-6988A", "-6993A", "-6994T", "-6997C", "-6999C", "-7000A", "A7001G", "-7002A", "T7003C", "-7005G", "A7015C", "G7100C", "A7151G", "C7153G", "G7168A", "G7182C", "G7322A", "A7373G", "A7572G", "C7625G", "G7640C", "G7689A", "A7700C", "C7702A", "G7790A", "A7791G", "T7852C", "G7883A", "T7913C", "C7921A", "G7937A", "C7960A", "A8029G", "G8030C", "A8152G", "T8164C", "C8167T", "C8267A", "T8277C", "C8382G", "C8383A", "T8384A", "C8386A", "T8387C", "G8393A", "A8456T", "C8499G", "A8537G", "G8589T", "A8590C", "T8595G", "A8656G", "C8690T", "C8720T", "A8762C", "A8794G", "A8804G", "G8805A", "A8829T", "T8843C", "G8905T", "G8922A", "G9008-", "C9012A", "T9014G", "T9051A"], "INT": ["K14R", "S17N", "Q136H", "G163E", "H171Q", "F185-"], "RT-p51": ["E39D", "E169D", "G335D", "R356K", "G359S", "E404D"], "RT-p66": ["E39D", "E169D", "G335D", "R356K", "G359S", "E404D", "S491P", "V531I"], "gp120": ["N52S", "-112A", "S114R", "-116V", "-117T", "I133M", "V137L", "K141Q", "K142T", "H145N", "R164D", "L165S", "I166K", "N167S", "T204A", "E262K", "N267T", "T269I", "H302Q", "G307N", "T308A", "K316A", "H324Y", "K361R", "S369R", "-375Y", "-376D", "-377S", "-380T", "-381K", "E416Q", "-433E", "T436N", "G443A"], "gp41": ["V7M", "I24V", "K90R", "L108V", "E113Q", "G129D", "N133Q", "D163S", "V194I", "F206L", "A212T", "A243P", "L322I"], "nef": ["P14E", "A15D", "E38D", "F85V", "E151G", "E155K", "S163C", "R188L", "V194M"], "p17": ["E12D", "K26R", "G62E", "Y79F"], "p2": ["T6N", "T8N", "N9-", "V12A", "-13V"], "p24": ["L83I", "I91V", "P92A", "T171V", "G208A"], "p6": ["I21M", "P49Q"], "p7": ["I12T"], "pro": ["L10I", "Q18L", "I93L"], "rev": ["S30N", "S61A", "I102V", "S106P", "P107S"], "tat": ["K40N", "S46F", "S68A", "P84Q"], "vif": ["H27Y", "V31I", "K63E", "E78K", "Q136R"], "vpr": ["L84Q"], "vpu": ["L4S", "V5T", "I28L", "-72G", "H73R"]}, "labels": {"aa": "INT: K14R, S17N, Q136H, G163E, H171Q, F185-; RT-p51: E39D, E169D, G335D, R356K, G359S, E404D; RT-p66: E39D, E169D, G335D, R356K, G359S, E404D, S491P, V531I; gp120: N52S, -112A, S114R, -116V, -117T, I133M, V137L, K141Q, K142T, H145N, R164D, L165S, I166K, N167S, T204A, E262K, N267T, T269I, H302Q, G307N, T308A, K316A, H324Y, K361R, S369R, -375Y, -376D, -377S, -380T, -381K, E416Q, -433E, T436N, G443A; gp41: V7M, I24V, K90R, L108V, E113Q, G129D, N133Q, D163S, V194I, F206L, A212T, A243P, L322I; nef: P14E, A15D, E38D, F85V, E151G, E155K, S163C, R188L, V194M; p17: E12D, K26R, G62E, Y79F; p2: T6N, T8N, N9-, V12A, -13V; p24: L83I, I91V, P92A, T171V, G208A; p6: I21M, P49Q; p7: I12T; pro: L10I, Q18L, I93L; rev: S30N, S61A, I102V, S106P, P107S; tat: K40N, S46F, S68A, P84Q; vif: H27Y, V31I, K63E, E78K, Q136R; vpr: L84Q; vpu: L4S, V5T, I28L, -72G, H73R"}}}, {"name": "MH986016", "node_attrs": {"div": 0.24538000000000001, "accession": "MH986016", "clade_membership": {"value": "other"}, "country": {"value": "BR"}, "date": {"value": 2007.0}, "Strain_name": {"value": "BRGO3001"}, "LANL_subtype": {"value": "CRF81_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A261-", "C262-", "-265G", "G407A", "T572C", "A605C", "G619A", "A632G", "A676C", "G690-", "C691-", "A697G", "A730T", "G771C", "C926T", "G998A", "T1004C", "A1097G", "A1115C", "G1313A", "T1334C", "G1355A", "G1388A", "A1441C", "C1492A", "T1514C", "G1625A", "T1646C", "G1846A", "A1963G", "A2185G", "A2626C", "T2632C", "G2714A", "A2770G", "C2776T", "T2803G", "A2854G", "C2953A", "C2960T", "A3031G", "G3085A", "C3129A", "C3266T", "A3454G", "G3569A", "A3629C", "A3658C", "A3674C", "A3697C", "A3787G", "G3803C", "C3889T", "T3904C", "A3952G", "G4046A", "C4072T", "C4110T", "C4180T", "G4226A", "G4267A", "G4313A", "A4385C", "A4391T", "C4738A", "A4739G", "A4820G", "A4888G", "T4965G", "G5212A", "A5302C", "A5336G", "C5345T", "A5352C", "A5397G", "T5470C", "C5491A", "A5494C", "A5563C", "T5577C", "C5621T", "C5651T", "C5678T", "A5704C", "T5707A", "T5708G", "G5717A", "G5822A", "G5823T", "A6022G", "A6024G", "A6061C", "A6092G", "T6169G", "-6172A", "A6176G", "G6177T", "A6180C", "T6181C", "T6183G", "T6184C", "-6186G", "C6189A", "T6193C", "A6197G", "-6206T", "-6207T", "-6208A", "G6209A", "-6210C", "-6211A", "-6212G", "-6214A", "-6215C", "C6216T", "-6217G", "-6219G", "G6224T", "G6227-", "A6228-", "A6229-", "A6230-", "T6231-", "A6232-", "A6233-", "T6242A", "A6303G", "A6324G", "T6328C", "A6330C", "C6340T", "C6382A", "G6391A", "A6403G", "A6461G", "T6487C", "A6488G", "T6523C", "A6525G", "A6553G", "A6571G", "A6602G", "C6612T", "A6614C", "G6743A", "A6773G", "G6776A", "A6779G", "A6780C", "A6789G", "A6849G", "C6850A", "A6854G", "C6857G", "C6876T", "-6964T", "A6965G", "-6988C", "A6990G", "-6993C", "-6994A", "A6996G", "-6997A", "-6999A", "-7000C", "-7002T", "-7005C", "A7007G", "T7009C", "G7026A", "A7129G", "A7152C", "A7155C", "A7161C", "T7222C", "G7375T", "G7459A", "A7477G", "G7533T", "T7630G", "A7633C", "A7701C", "T7715G", "G7735A", "A7747C", "G7753A", "A7782G", "T7796A", "A7819G", "C7843T", "A7885G", "A7971G", "A8008G", "C8047T", "G8050T", "A8143G", "G8144A", "C8146T", "G8172T", "C8223T", "G8264A", "A8273G", "A8400C", "A8446G", "A8474G", "A8522G", "G8526C", "A8591T", "A8597C", "T8644C", "A8657T", "G8678A", "A8701T", "C8723T", "C8790A", "G8814A", "A8824C", "C8868A", "C8904A", "T8915G", "A8950T", "A8954C", "G8955A", "G9006C", "G9007A", "A9009G", "A9015T", "G9016C", "T9017C", "T9040C", "C9068T"], "INT": ["E10Q", "A91T", "T112I", "V151I", "V180I"], "RT-p51": ["E177D", "D207N", "P345Q"], "RT-p66": ["E177D", "D207N", "P345Q", "E492K", "K512Q", "K527Q"], "gp120": ["I56M", "K57R", "E69D", "I80V", "-105K", "-106A", "-107K", "-108V", "-109T", "N111-", "N113-", "N115S", "E125-", "I126-", "K127-", "S130T", "K150R", "-157G", "D159T", "N160S", "S161N", "K203E", "N212D", "K224R", "T250A", "T253V", "K254Q", "T261K", "D297N", "K309A", "E312R", "N332R", "T334A", "Q335E", "P341L", "T370A", "N382G", "D384I", "R391K", "-433T"], "gp41": ["G77V", "D109E", "E110D", "N133T", "S138A", "E148D", "N160S", "S165T", "E223G", "A281T", "S290I", "T307I", "V321I", "R324G", "T325I"], "nef": ["I20L", "Q35R", "A53P", "S83D", "I101T", "R105N", "Y120F", "P150T", "E158K", "N161T", "P176T", "R188S", "Y203F", "K204N", "D205N"], "p17": ["Q90H", "R95K", "K114T", "A120G", "D121-", "Y132F"], "p2": ["-10A"], "p24": ["A14P", "E128D"], "p7": ["P9Q"], "rev": ["E11D", "L21S", "T54A", "P67S", "A68S", "S99D", "P100S", "E108D"], "tat": ["F32L", "L39M", "K40Q", "T58P", "K63Q"], "vif": ["T51K", "F127D"], "vpr": ["Q66H", "I83L"], "vpu": ["A15V", "T24I", "I33L", "L34R", "R37K", "-72D"]}, "labels": {"aa": "INT: E10Q, A91T, T112I, V151I, V180I; RT-p51: E177D, D207N, P345Q; RT-p66: E177D, D207N, P345Q, E492K, K512Q, K527Q; gp120: I56M, K57R, E69D, I80V, -105K, -106A, -107K, -108V, -109T, N111-, N113-, N115S, E125-, I126-, K127-, S130T, K150R, -157G, D159T, N160S, S161N, K203E, N212D, K224R, T250A, T253V, K254Q, T261K, D297N, K309A, E312R, N332R, T334A, Q335E, P341L, T370A, N382G, D384I, R391K, -433T; gp41: G77V, D109E, E110D, N133T, S138A, E148D, N160S, S165T, E223G, A281T, S290I, T307I, V321I, R324G, T325I; nef: I20L, Q35R, A53P, S83D, I101T, R105N, Y120F, P150T, E158K, N161T, P176T, R188S, Y203F, K204N, D205N; p17: Q90H, R95K, K114T, A120G, D121-, Y132F; p2: -10A; p24: A14P, E128D; p7: P9Q; rev: E11D, L21S, T54A, P67S, A68S, S99D, P100S, E108D; tat: F32L, L39M, K40Q, T58P, K63Q; vif: T51K, F127D; vpr: Q66H, I83L; vpu: A15V, T24I, I33L, L34R, R37K, -72D"}}}]}, {"name": "other_NODE_0000031", "node_attrs": {"div": 0.17313, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A261G", "C476T", "T641C", "G706A", "A749C", "A1022G", "A1804G", "A1841G", "T2206A", "G2224A", "G2459A", "T2723C", "A3019G", "G3091A", "G3154A", "C4006T", "C4534T", "C4771A", "A4774G", "C4857A", "G4859A", "A4862G", "G4949A", "A5024G", "G5128A", "T5281C", "C5491A", "A5555C", "T5576C", "A5677T", "T5686C", "T5787A", "G5791T", "G5802-", "G5803-", "A5804-", "A5805-", "A5806-", "-5817A", "G5842A", "C5869A", "C5974T", "A6020G", "A6024T", "T6154C", "A6276T", "A6349G", "T6562C", "G6577T", "T6586C", "G6593C", "C6599A", "A6602T", "T6613A", "G6631T", "C6721T", "A6779C", "A6856T", "C6860T", "-7005A", "-7006C", "A7106T", "A7123T", "-7162G", "A7183G", "G7198A", "A7447T", "A7532C", "A7553C", "G7676A", "G7868T", "A7918G", "T7968C", "C7969A", "T8007G", "A8018G", "C8020T", "G8030A", "A8043T", "C8051A", "T8279G", "A8432G", "-8491C", "T8505G", "G8506T", "A8643G", "C8832T", "C8913T", "G8917A", "-8974T", "T9040G", "A9042G", "C9075T"], "RT-p51": ["E122K"], "RT-p66": ["E122K"], "gp120": ["N5K", "I56V", "P57L"], "gp41": ["K77Q", "I84L", "D125N", "A189S", "I222T", "V235G", "N239D", "A243T", "D247V"], "nef": ["C55V", "I101V", "R191F", "R192H"], "p17": ["S124N"], "p6": ["K42R"], "pro": ["I15V", "M89L"], "rev": ["K14Q", "E57G", "R58W", "A68E"], "tat": ["L39I", "T58P", "Q60P", "V67A", "S87Q"], "vif": ["A62D"], "vpr": ["I84T"], "vpu": ["T24S", "D60E", "E62S", "E63A", "V79I"]}, "labels": {"aa": "RT-p51: E122K; RT-p66: E122K; gp120: N5K, I56V, P57L; gp41: K77Q, I84L, D125N, A189S, I222T, V235G, N239D, A243T, D247V; nef: C55V, I101V, R191F, R192H; p17: S124N; p6: K42R; pro: I15V, M89L; rev: K14Q, E57G, R58W, A68E; tat: L39I, T58P, Q60P, V67A, S87Q; vif: A62D; vpr: I84T; vpu: T24S, D60E, E62S, E63A, V79I"}}, "children": [{"name": "EU170151", "node_attrs": {"div": 0.22376000000000001, "accession": "EU170151", "clade_membership": {"value": "other"}, "country": {"value": "LU"}, "date": {"value": 2003.0}, "Strain_name": {"value": "luBF_01_03"}, "LANL_subtype": {"value": "CRF42_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["A161C", "A227C", "A265G", "-304A", "-305T", "G335-", "A336-", "T337-", "A353G", "A369G", "G424A", "A500G", "T506C", "T534G", "G599A", "G712A", "A810G", "T861G", "A941G", "C974T", "G989A", "T1004C", "C1013T", "G1019A", "A1046T", "C1060A", "A1070G", "C1091T", "A1115G", "T1181C", "A1241G", "T1244C", "C1245T", "A1278G", "A1279G", "A1400G", "T1427A", "A1449G", "A1450G", "G1452A", "A1464C", "G1498A", "G1543A", "A1592G", "G1619A", "C1656T", "A1657G", "A1670C", "T1682C", "G1687A", "A1691G", "A1709G", "C1724T", "C1756T", "A1765G", "A1781T", "A1786G", "G1794A", "G1848A", "C1853A", "A1906G", "A1920G", "C1960T", "C1985A", "T1986G", "G2008A", "C2047T", "A2063C", "A2075C", "T2083C", "T2095C", "G2210T", "A2221G", "A2275G", "C2281T", "A2311G", "A2386C", "T2393C", "T2497C", "T2499C", "G2539A", "C2584T", "T2608C", "C2694T", "G2714C", "A2727G", "A2734C", "T2735C", "T2737C", "T2788A", "G2828C", "G2830A", "A2842G", "T2890C", "G2902A", "C2909G", "A2911G", "G2926A", "C3023T", "G3094A", "A3136G", "C3159G", "A3230G", "A3238C", "A3247G", "A3249G", "C3252T", "C3266T", "A3280G", "A3286G", "C3303T", "A3385G", "A3391C", "G3442A", "C3445G", "A3454G", "A3460G", "T3469C", "T3551C", "C3589T", "A3607G", "A3622G", "T3644A", "C3763T", "C3773T", "T3779C", "G3796A", "A3808T", "A3814G", "A3817G", "G3834A", "T3856C", "C3857A", "G3859A", "A3868G", "G3884A", "A3890T", "G3916A", "C4015T", "A4021G", "T4024C", "A4025C", "C4149T", "A4150G", "T4165C", "G4263A", "G4267A", "A4273G", "T4288C", "T4291C", "A4408G", "A4475G", "A4495G", "A4543C", "G4549A", "A4555G", "A4561G", "G4622A", "A4694G", "G4726C", "G4727T", "G4769T", "A4771G", "G4779A", "G4802A", "G4887A", "A4904G", "T4919C", "A4952T", "G4953A", "T4969G", "C4976T", "A5007C", "G5087A", "G5099A", "A5167G", "C5227T", "A5230G", "T5275G", "C5280T", "A5305G", "C5306T", "A5335G", "C5351T", "T5356A", "T5357C", "C5358A", "G5359T", "A5362G", "A5366G", "G5386A", "A5397G", "C5398T", "A5410G", "T5439C", "A5444C", "G5448T", "A5463G", "A5495G", "G5546A", "A5547C", "A5563G", "T5577G", "C5581T", "A5603C", "A5621T", "A5622G", "-5626T", "A5659G", "G5673A", "C5727T", "G5737A", "T5739G", "A5748C", "A5781C", "-5819T", "T5828A", "T5852A", "C5884T", "C5916A", "C5924T", "T5956C", "C6007T", "A6030T", "G6079A", "A6130G", "G6170A", "-6172C", "G6175C", "A6177G", "A6180C", "A6182G", "C6183A", "T6187G", "A6188C", "C6189T", "T6193C", "-6200G", "-6201A", "-6202A", "-6203G", "-6204A", "-6205A", "-6206A", "-6207T", "-6208A", "G6224A", "G6225A", "-6226C", "A6251G", "C6253T", "A6257T", "C6258T", "A6261G", "G6267A", "G6269A", "A6270G", "A6278C", "A6303G", "C6305T", "T6306C", "A6333G", "T6337A", "G6339A", "C6340T", "G6345T", "A6354G", "T6355C", "T6361C", "C6369T", "C6370T", "A6371C", "T6382C", "A6388T", "G6392A", "A6430G", "G6481A", "A6525G", "G6532A", "A6535G", "C6601T", "T6631C", "G6647C", "A6649G", "T6658C", "A6661G", "C6673T", "-6703A", "A6714G", "T6745C", "A6748C", "A6754G", "C6758T", "A6767G", "A6775G", "C6777A", "T6793A", "A6797G", "A6801G", "G6806A", "T6808G", "A6814G", "A6820G", "G6821T", "A6822C", "A6823T", "A6825T", "C6826T", "T6829C", "-6836A", "-6838T", "T6849A", "C6850A", "C6857T", "A6858C", "G6871A", "A6881G", "C6892T", "G6910A", "T6925C", "T6932A", "A6935G", "A6947-", "G6948-", "T6949-", "A6950-", "C6951-", "T6952-", "T6953-", "G6954-", "-6989G", "-6990A", "-6992A", "-6993C", "-6994A", "-6995G", "-6996A", "-6997A", "-6998T", "-6999C", "-7000C", "-7002A", "A7015T", "C7024T", "A7025C", "A7060G", "C7078T", "C7079G", "A7096C", "A7101C", "A7102C", "A7148C", "A7149T", "T7150G", "A7152C", "G7168C", "A7246G", "C7250T", "A7269C", "G7270A", "-7307G", "-7308T", "-7309G", "A7312G", "A7315G", "A7373G", "G7440A", "T7462C", "A7573G", "T7622A", "C7625T", "T7626A", "A7627T", "G7628C", "T7630G", "G7633A", "A7641G", "C7658G", "G7668A", "A7669G", "A7672G", "T7675C", "A7685T", "G7688C", "G7689A", "C7690A", "T7691G", "T7692A", "C7699T", "A7701G", "C7702G", "A7714C", "G7753A", "A7755C", "C7792T", "C7805T", "T7813C", "A7847G", "C7906T", "C7921T", "T7932A", "C7988A", "A7989G", "T8008A", "G8010C", "A8011T", "G8070T", "C8071T", "T8103C", "A8152G", "T8182A", "T8210C", "A8227T", "T8277C", "A8284G", "T8290C", "C8296T", "G8304C", "A8342G", "-8370T", "C8406A", "G8407A", "G8414A", "A8417G", "A8425T", "A8426T", "G8436C", "T8440C", "A8446G", "A8469C", "G8476C", "C8477T", "G8490A", "T8495G", "C8499G", "A8503C", "G8528A", "A8531G", "A8537G", "A8540G", "C8543G", "T8546C", "T8594A", "G8654A", "A8656G", "G8682A", "A8726C", "A8750C", "T8789G", "C8791A", "A8795T", "G8805A", "A8812C", "A8827C", "C8868A", "A8885G", "A8886G", "C8904A", "G8905A", "C8906G", "A8918T", "A8924G", "G8929A", "A8930C", "A8967C", "G8968A", "-8971T", "A8998-", "C8999-", "T9000-", "T9001-", "T9002-", "C9003-", "C9004-", "A9005-", "G9006-", "G9007-", "G9008-", "T9017C", "C9029A", "C9068T", "T9074C", "-9109T"], "INT": ["E11D", "R20K", "L28I", "V37I", "S39C", "I84L", "A125V", "G163E", "I234V", "G283S"], "RT-p51": ["A39S", "I135T", "T200I", "E207Q", "K211R", "F214L", "P272A", "A355G", "S379G", "K385R", "T386I", "T403I", "E432D"], "RT-p66": ["A39S", "I135T", "T200I", "E207Q", "K211R", "F214L", "P272A", "A355G", "S379G", "K385R", "T386I", "T403I", "E432D", "L517I", "S554T"], "gp120": ["L57V", "E59V", "N105D", "-106K", "-107L", "-109S", "N111E", "-112E", "N113I", "-123K", "-124N", "I133V", "T135L", "E136G", "R138K", "D139S", "K141M", "K142Q", "K150R", "L151S", "D159K"], "gp41": ["I24V", "R46K", "S107T", "L108Y", "D109Q", "D113G", "R122K", "T128S", "G129Q", "L130E", "N133R", "E137D", "E151A", "I182V", "L210H", "Q229R", "G235R", "S256I", "V267A", "S293R", "I318V", "R334T"], "nef": ["I10L", "R22K", "E28V", "A32P", "V33A", "Q35R", "I43L", "S45T", "A50T", "N51K", "D54A", "F85L", "V114I", "D149E", "P150Q", "E155K", "N157T", "N162T", "P176T", "M182V", "R188K", "R196H"], "p1": ["H9C"], "p17": ["K12E", "R30K", "L61M", "S67A", "S126N"], "p2": ["N9G", "-10T", "-13L"], "p24": ["I27V", "S44A", "M96I", "T110N", "N183G"], "p6": ["S3N", "P23-", "S24P", "P25S", "Q26L", "E29G", "Y36C", "A39T"], "p7": ["R11K", "R26K"], "pro": ["G17E", "L19I", "D35E", "I36M", "K41R", "L63S", "I93L"], "rev": ["E11T", "L21R", "A47E", "H53Q", "I55F", "S61N", "Q74H", "I102V", "S112T"], "tat": ["V4I", "K12E", "N23T", "K24N", "K40R", "R57N", "K63E", "S75T"], "vif": ["R47T", "V51I", "D62G", "K63R", "V65I", "D101N", "K122N", "A123T", "I128R", "K141Q"], "vpr": ["A59V", "Q77R", "T84N", "R85I", "Q86R", "S94N"], "vpu": ["I18V", "D44K", "R47S", "E58D", "L74H", "L82Q"]}, "labels": {"aa": "INT: E11D, R20K, L28I, V37I, S39C, I84L, A125V, G163E, I234V, G283S; RT-p51: A39S, I135T, T200I, E207Q, K211R, F214L, P272A, A355G, S379G, K385R, T386I, T403I, E432D; RT-p66: A39S, I135T, T200I, E207Q, K211R, F214L, P272A, A355G, S379G, K385R, T386I, T403I, E432D, L517I, S554T; gp120: L57V, E59V, N105D, -106K, -107L, -109S, N111E, -112E, N113I, -123K, -124N, I133V, T135L, E136G, R138K, D139S, K141M, K142Q, K150R, L151S, D159K; gp41: I24V, R46K, S107T, L108Y, D109Q, D113G, R122K, T128S, G129Q, L130E, N133R, E137D, E151A, I182V, L210H, Q229R, G235R, S256I, V267A, S293R, I318V, R334T; nef: I10L, R22K, E28V, A32P, V33A, Q35R, I43L, S45T, A50T, N51K, D54A, F85L, V114I, D149E, P150Q, E155K, N157T, N162T, P176T, M182V, R188K, R196H; p1: H9C; p17: K12E, R30K, L61M, S67A, S126N; p2: N9G, -10T, -13L; p24: I27V, S44A, M96I, T110N, N183G; p6: S3N, P23-, S24P, P25S, Q26L, E29G, Y36C, A39T; p7: R11K, R26K; pro: G17E, L19I, D35E, I36M, K41R, L63S, I93L; rev: E11T, L21R, A47E, H53Q, I55F, S61N, Q74H, I102V, S112T; tat: V4I, K12E, N23T, K24N, K40R, R57N, K63E, S75T; vif: R47T, V51I, D62G, K63R, V65I, D101N, K122N, A123T, I128R, K141Q; vpr: A59V, Q77R, T84N, R85I, Q86R, S94N; vpu: I18V, D44K, R47S, E58D, L74H, L82Q"}}}, {"name": "other_NODE_0000032", "node_attrs": {"div": 0.21852, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T156A", "T258C", "G384A", "G455A", "C467T", "T495G", "A516T", "G520A", "C540A", "A554G", "A571T", "A606C", "G608C", "A689G", "A697G", "T746C", "A791G", "A839G", "A869G", "G998A", "A1101G", "A1205G", "T1344C", "G1355A", "T1409C", "C1439T", "A1449C", "G1474A", "T1501A", "C1541A", "G1697A", "T1741G", "A1742G", "-1746C", "-1747C", "-1748C", "C1749T", "T1752C", "C1753A", "T1754C", "C1756A", "G1760A", "A1772G", "T1796C", "C1826T", "A1857G", "T1864C", "C1865T", "A1903C", "T1954C", "C1981T", "C1993T", "T2013C", "A2063T", "C2098A", "A2113G", "A2131G", "G2155A", "T2257C", "C2353T", "A2362G", "T2431G", "A2461G", "C2464G", "G2470A", "G2473A", "T2476C", "T2485C", "A2498G", "A2500C", "G2518A", "A2524G", "T2527C", "G2548A", "A2579T", "G2602T", "T2605C", "A2612G", "A2613C", "C2615A", "T2638C", "A2665G", "G2704A", "A2707G", "C2708T", "G2710A", "A2716G", "G2722A", "G2725A", "T2788G", "A2829T", "T2908C", "A2925G", "A2951G", "C2953A", "A2968C", "A2974G", "A2983T", "G2984A", "A2985C", "G2995A", "C2996T", "G3004A", "A3043G", "T3045C", "A3058G", "T3059G", "G3088A", "C3100A", "G3211A", "A3217G", "A3251C", "C3275T", "A3276T", "A3283G", "A3292T", "G3334A", "T3355C", "C3358T", "T3359C", "A3387C", "T3399C", "T3412C", "G3431T", "G3439A", "T3449A", "T3450A", "T3550C", "G3553A", "C3610T", "A3676T", "G3694A", "T3746C", "A3755G", "G3766A", "A3775G", "T3778C", "A3794C", "C3799A", "A3802G", "G3825A", "A3874C", "C4069T", "G4148A", "A4178G", "A4228G", "T4247C", "G4268A", "G4354A", "G4388T", "A4391T", "C4428T", "C4501G", "A4567G", "G4642A", "A4643C", "C4652A", "T4656C", "C4665T", "T4674C", "G4677A", "T4691C", "G4695A", "T4701A", "A4702G", "T4703G", "T4706C", "A4717T", "G4765A", "G4766A", "G4767A", "A4768C", "G4769A", "A4775T", "A4782G", "A4786C", "A4860G", "A4950C", "A4952G", "A4966G", "T4967C", "A4968T", "G4975A", "G4986A", "A4988T", "A5015G", "C5050A", "A5057G", "T5091C", "A5112G", "A5119G", "T5171C", "G5176A", "G5179A", "T5182C", "G5246A", "A5248T", "T5251C", "G5257A", "A5269G", "A5278G", "A5290G", "T5293A", "C5294T", "T5314C", "T5319A", "G5330A", "T5356C", "A5396G", "T5424C", "A5432G", "A5433G", "C5487T", "C5511T", "G5531A", "A5563C", "C5567T", "G5620C", "-5626G", "T5627C", "C5639G", "-5819G", "G5856A", "A5863T", "G6023T", "G6029C", "G6037A", "A6044G", "C6052T", "G6086A", "A6087C", "G6088A", "G6133A", "T6163C", "-6172A", "C6198A", "-6215A", "-6216T", "-6217G", "-6218G", "-6219A", "-6220G", "A6221G", "-6226A", "A6232G", "G6260A", "A6262C", "A6275G", "G6277A", "A6279C", "G6280A", "T6298C", "G6314A", "A6327G", "G6368A", "C6397T", "T6399G", "T6400G", "C6427T", "G6463A", "A6478G", "A6508G", "C6545T", "C6548T", "A6573G", "A6581G", "A6589G", "C6607T", "T6634G", "G6638C", "-6697G", "A6712C", "C6713A", "A6742G", "T6763C", "A6767C", "G6807T", "A6818G", "A6820T", "-6833A", "-6834A", "A6884G", "C6885T", "T6916C", "C6922T", "A6935C", "-6955G", "-6956A", "-6957C", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964T", "-6965A", "-6966C", "-6967T", "T7009A", "A7046T", "C7064A", "G7088A", "C7089G", "A7090T", "A7094C", "A7095T", "T7130C", "A7138G", "T7144G", "A7189G", "G7197A", "G7244A", "A7256G", "G7276A", "A7280C", "G7281A", "C7289G", "A7290G", "G7295C", "G7304-", "C7305-", "A7306-", "A7398T", "T7433C", "A7522G", "T7545G", "T7565A", "C7579T", "A7583C", "A7590G", "C7603T", "T7604A", "A7627G", "T7630C", "G7631C", "A7673G", "C7678T", "C7684T", "C7742A", "A7747C", "T7757C", "G7846A", "T7866G", "C7874A", "C7898A", "G7915A", "C7939T", "A7962G", "G8001C", "C8009T", "A8011C", "A8023C", "A8029G", "G8061T", "A8104G", "G8105A", "G8170C", "A8204G", "T8209C", "G8219A", "C8232T", "G8240C", "G8254A", "G8255A", "T8265C", "A8266T", "A8269G", "C8294A", "-8370A", "T8374G", "G8412C", "A8413C", "G8414T", "A8441G", "G8453A", "A8458G", "A8461G", "T8462G", "A8465G", "C8471T", "A8486T", "A8494C", "T8507G", "C8514G", "T8585C", "G8590C", "T8595A", "T8596G", "A8597G", "T8646C", "C8684T", "C8720T", "C8775T", "T8789C", "G8793C", "A8795G", "A8858G", "G8864T", "G8875A", "T8883C", "A8918G", "A8950T", "A8967T", "-8971C", "-8997G", "G9016A", "C9064A", "C9067A", "T9073G"], "INT": ["K7Q", "T124A", "A125T", "I135V", "V165I", "A205S", "T206S", "T218I", "D256E"], "RT-p51": ["D123E", "I135V", "S162C", "E169D", "K173A", "Q174K", "Q245V", "K277R", "T286A", "E291D", "E297T", "V317A", "S322A", "T386P", "Q394L", "E399D", "K431T", "V435A"], "RT-p66": ["D123E", "I135V", "S162C", "E169D", "K173A", "Q174K", "Q245V", "K277R", "T286A", "E291D", "E297T", "V317A", "S322A", "T386P", "Q394L", "E399D", "K431T", "V435A", "A446S", "L452K", "K527N", "S554A"], "gp120": ["S1N", "E59Q", "N64D", "E78T", "-107N", "-109N", "-112S", "-114S", "-115S", "-116S", "-118E", "-119K", "I126M", "E136N", "K141V", "K142T", "V154I", "N158S", "F182W", "E240G", "E241D", "I243V", "E247Q", "L249I", "T250S", "Q259H", "E262Q", "I281M", "Q287K", "I305L", "G307R", "K309Q", "A318V", "T344V", "K361Q", "-368T", "-369N", "-371T", "M398L", "N414L", "N432Q", "-433N", "R448K", "I468V", "R476Q", "Q479G", "E481Q"], "gp41": ["Q32L", "L81R", "S88T", "T94P", "N96S", "S101T", "E110Q", "I124V", "Q147K", "E148D", "N160S", "F188C", "L191I", "Q199K", "E220G", "R233T", "R236C", "C253F", "A268T", "I301V", "A306T", "A310V", "E313Q", "V321A", "T325I", "H331N"], "nef": ["I10M", "V11G", "E24P", "A26T", "G29R", "K39R", "H40R", "N51T", "A53P", "L58V", "Y81S", "K82R", "G83A", "F85R", "Y102H", "D151Q", "E174D", "R178K", "Y203F"], "p17": ["E17K", "S54A", "G62E", "Q69K", "Y79F", "K91H", "D121A"], "p2": ["N9H", "-10A"], "p24": ["I124V"], "p6": ["I21R", "P25Q"], "p7": ["R3K", "I12N"], "pro": ["K20R", "I72T"], "rev": ["G6R", "P31S", "Q51H", "H53R", "S54L", "I55L", "I59L", "S61D", "S86D", "A108P"], "tat": ["K7R", "K19R", "R52Q", "K63Q", "T64I", "K85E"], "vif": ["R19N", "N22K", "H27Y", "Y30H", "V31I", "G37R", "Y39R", "Y44F", "G60E", "D61T", "K63T", "I66V", "K67T", "R92G", "K122Q", "H127R", "I128L", "S130N", "E134N", "T155K", "K176E", "Q178R"], "vpr": ["Q3R", "E48N", "F72Y"], "vpu": ["V5Q", "L7A", "A11G", "M67R"]}, "labels": {"aa": "INT: K7Q, T124A, A125T, I135V, V165I, A205S, T206S, T218I, D256E; RT-p51: D123E, I135V, S162C, E169D, K173A, Q174K, Q245V, K277R, T286A, E291D, E297T, V317A, S322A, T386P, Q394L, E399D, K431T, V435A; RT-p66: D123E, I135V, S162C, E169D, K173A, Q174K, Q245V, K277R, T286A, E291D, E297T, V317A, S322A, T386P, Q394L, E399D, K431T, V435A, A446S, L452K, K527N, S554A; gp120: S1N, E59Q, N64D, E78T, -107N, -109N, -112S, -114S, -115S, -116S, -118E, -119K, I126M, E136N, K141V, K142T, V154I, N158S, F182W, E240G, E241D, I243V, E247Q, L249I, T250S, Q259H, E262Q, I281M, Q287K, I305L, G307R, K309Q, A318V, T344V, K361Q, -368T, -369N, -371T, M398L, N414L, N432Q, -433N, R448K, I468V, R476Q, Q479G, E481Q; gp41: Q32L, L81R, S88T, T94P, N96S, S101T, E110Q, I124V, Q147K, E148D, N160S, F188C, L191I, Q199K, E220G, R233T, R236C, C253F, A268T, I301V, A306T, A310V, E313Q, V321A, T325I, H331N; nef: I10M, V11G, E24P, A26T, G29R, K39R, H40R, N51T, A53P, L58V, Y81S, K82R, G83A, F85R, Y102H, D151Q, E174D, R178K, Y203F; p17: E17K, S54A, G62E, Q69K, Y79F, K91H, D121A; p2: N9H, -10A; p24: I124V; p6: I21R, P25Q; p7: R3K, I12N; pro: K20R, I72T; rev: G6R, P31S, Q51H, H53R, S54L, I55L, I59L, S61D, S86D, A108P; tat: K7R, K19R, R52Q, K63Q, T64I, K85E; vif: R19N, N22K, H27Y, Y30H, V31I, G37R, Y39R, Y44F, G60E, D61T, K63T, I66V, K67T, R92G, K122Q, H127R, I128L, S130N, E134N, T155K, K176E, Q178R; vpr: Q3R, E48N, F72Y; vpu: V5Q, L7A, A11G, M67R"}}, "children": [{"name": "GU595149", "node_attrs": {"div": 0.23809, "accession": "GU595149", "clade_membership": {"value": "other"}, "country": {"value": "IT"}, "date": {"value": 2001.0}, "Strain_name": {"value": "53143"}, "LANL_subtype": {"value": "CRF75_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G257C", "G259C", "A265C", "G270A", "G272A", "G275C", "G277A", "G282C", "G285C", "T288C", "G298C", "-304A", "-305A", "G367A", "G379A", "A417C", "C483G", "A488G", "A562C", "C626G", "C641G", "C713T", "A735G", "C875T", "C897T", "A1046G", "A1089G", "G1090A", "A1124G", "C1171T", "T1172G", "G1173A", "T1174C", "C1175T", "T1181C", "A1196G", "G1199A", "G1206A", "T1212C", "T1234C", "C1235T", "T1237A", "A1259G", "A1271G", "G1272T", "G1404A", "G1443A", "A1670G", "A1709G", "C1754G", "A1768C", "G1848A", "G1912A", "A2293G", "A2311G", "A2386T", "C2671T", "A2722T", "A2755G", "C2797T", "G2821C", "G2887A", "A2914G", "G2969A", "A2980G", "A3070G", "A3100G", "A3409G", "A3478G", "G3523A", "G3544A", "T3567C", "T3613C", "G3631A", "A3744G", "G3796A", "A3805G", "A3808C", "G3836T", "G3869A", "A4016G", "C4162T", "A4222G", "T4355A", "A4356C", "C4471A", "G4549A", "T4679C", "G4727A", "A4735G", "A4737G", "G4774C", "G4887A", "A5059G", "T5062C", "G5075A", "A5093C", "T5102C", "A5187G", "C5280T", "A5463C", "C5548G", "T5562C", "A5623G", "C5651T", "C5763T", "A5907G", "A6009G", "A6050G", "A6179G", "A6186C", "C6189A", "A6198G", "-6200A", "-6201G", "-6202C", "-6203G", "-6204G", "-6205G", "-6206G", "-6207A", "-6208A", "-6209A", "-6210A", "-6211G", "A6222C", "A6235G", "C6238T", "A6304G", "A6329G", "A6335T", "A6402G", "T6436G", "A6463T", "A6464G", "A6475G", "A6535T", "A6693C", "A6723T", "G6725A", "G6743A", "T6793C", "A6797G", "G6803A", "A6811G", "C6826A", "-6835A", "-6836G", "-6838T", "T6932G", "-6958G", "-6977G", "-6978A", "-6979A", "-6980C", "-6981A", "-6982G", "-6983A", "-6984C", "-6985A", "-6986A", "-6987A", "-6988T", "-6989A", "-6990G", "-6992A", "-6993C", "-6994T", "-6995A", "-6996T", "-6997A", "-6998G", "-6999G", "-7000A", "-7002A", "G7026A", "G7065A", "T7087C", "A7101G", "A7154G", "A7158C", "C7164A", "G7519A", "A7549G", "C7630A", "G7640A", "C7658G", "A7714G", "G7753A", "A7782C", "C7801T", "A7818G", "C7843T", "A8006G", "A8184T", "A8236G", "G8280T", "A8305G", "A8323G", "G8388A", "A8409T", "G8454A", "A8469G", "C8565T", "A8584C", "A8587G", "C8607T", "G8654A", "T8740C", "A8801G", "C8869T", "A8870G", "A8886G", "G8888A", "A8954G", "C8989T", "C9003T"], "INT": ["E11D", "S17N", "A21S", "V32I", "S81G", "Y194T", "D232E"], "RT-p51": ["V292I"], "RT-p66": ["V292I", "L491S", "K550R"], "gp120": ["K18R", "N52S", "N66D", "-106V", "N109D", "-117G", "-121M", "-122E", "-123A", "-124G", "E183G", "T204E", "H280P", "Y290F", "A291T", "D294S", "D297N", "T308A", "N312K", "K315E", "V317I", "H324Q", "-326K", "N327D", "S360A", "S370G", "-372E", "S373Q", "-378N", "-379S", "-380T", "-381I", "-382G", "-383N", "R391K", "K416R", "N435D", "T437K"], "gp41": ["D109E", "D113N", "S160T", "K172R", "Q294L", "G326V"], "nef": ["V16I", "Q35P", "E38K", "I43V", "P75S", "H89Y", "R105K", "I133T", "P176L", "M182V", "H192Q"], "p17": ["G11E", "R15K", "K28Q", "L50V", "K76T", "D102E"], "p2": ["A7T"], "p24": ["I2V", "S120D", "P147L", "V148T", "E159K", "F161L", "F168S", "F169Y", "V181L", "G225S"], "p6": ["Q30P"], "pro": ["L10F", "G17E"], "rev": ["V16A", "L18F"], "tat": ["R29S", "P58A", "P77L"], "vif": ["K50R", "D101N", "K158R", "I159T"], "vpr": ["N28S", "A59V"], "vpu": ["I6V", "A15V"]}, "labels": {"aa": "INT: E11D, S17N, A21S, V32I, S81G, Y194T, D232E; RT-p51: V292I; RT-p66: V292I, L491S, K550R; gp120: K18R, N52S, N66D, -106V, N109D, -117G, -121M, -122E, -123A, -124G, E183G, T204E, H280P, Y290F, A291T, D294S, D297N, T308A, N312K, K315E, V317I, H324Q, -326K, N327D, S360A, S370G, -372E, S373Q, -378N, -379S, -380T, -381I, -382G, -383N, R391K, K416R, N435D, T437K; gp41: D109E, D113N, S160T, K172R, Q294L, G326V; nef: V16I, Q35P, E38K, I43V, P75S, H89Y, R105K, I133T, P176L, M182V, H192Q; p17: G11E, R15K, K28Q, L50V, K76T, D102E; p2: A7T; p24: I2V, S120D, P147L, V148T, E159K, F161L, F168S, F169Y, V181L, G225S; p6: Q30P; pro: L10F, G17E; rev: V16A, L18F; tat: R29S, P58A, P77L; vif: K50R, D101N, K158R, I159T; vpr: N28S, A59V; vpu: I6V, A15V"}}}, {"name": "MK341078", "node_attrs": {"div": 0.25315, "accession": "MK341078", "clade_membership": {"value": "other"}, "country": {"value": "ES"}, "date": {"value": 2017.0}, "Strain_name": {"value": "P4837"}, "LANL_subtype": {"value": "CRF75_BF1"}}, "branch_attrs": {"mutations": {"nuc": ["G278A", "A302T", "A303-", "T426C", "A435T", "G481C", "A485G", "A500G", "T516C", "G524A", "T534G", "A566G", "A581T", "C583T", "A645G", "G656A", "A672C", "G709A", "T718C", "T978G", "C1013T", "C1061T", "C1091T", "A1115C", "T1182C", "G1184A", "C1220T", "A1242G", "C1243T", "G1256A", "G1277A", "G1328A", "G1354C", "A1367G", "T1457A", "C1481T", "G1495A", "T1547C", "A1565G", "A1673G", "C1721T", "C1746T", "C1782A", "C1787T", "T1790C", "T1826G", "C1828A", "G1845A", "G1917A", "C1985G", "T2087C", "G2422A", "T2443C", "C2452T", "A2557G", "A2629G", "A2693G", "A2715C", "C2749T", "G2926A", "T2935C", "C2942A", "C2968T", "C2975A", "C3002T", "G3059A", "A3218G", "A3264G", "C3266T", "T3368C", "A3370G", "A3391G", "G3442T", "A3484G", "C3492T", "T3493G", "T3497C", "C3499T", "T3505G", "G3529A", "T3541C", "G3595A", "C3649T", "A3684G", "A3787G", "A3816G", "A3825C", "G3834A", "A3868G", "A3973C", "G3989A", "A4012G", "A4066T", "C4123T", "G4177A", "G4183A", "C4471T", "A4555G", "G4573A", "G4673A", "C4674A", "G4703A", "C4757T", "C4761T", "T4940A", "T4968C", "C5052A", "G5060A", "A5061G", "C5125T", "G5143A", "C5213A", "T5357C", "G5363A", "T5391C", "A5447C", "G5448A", "A5461C", "G5462A", "G5538A", "G5557A", "T5567G", "C5581G", "T5614C", "A5622T", "C5654G", "G5673A", "A5718G", "G5783A", "A5790G", "C5792A", "A5793T", "T5857A", "C5862A", "A5866C", "A5869G", "C5878A", "T5899G", "C5917T", "T5956C", "A6025C", "T6026A", "A6030C", "G6079A", "A6158C", "G6170A", "T6171A", "A6172G", "G6175T", "A6180C", "A6182G", "A6186G", "T6187G", "A6188G", "C6190T", "A6192G", "T6193C", "G6217A", "G6218A", "G6224C", "G6225A", "A6226G", "A6261G", "A6303T", "C6305A", "T6306G", "T6310C", "G6311A", "T6315C", "C6317A", "C6318A", "A6326G", "A6333G", "C6336G", "T6337C", "A6403T", "T6438A", "G6458A", "A6465C", "G6466C", "C6477T", "G6532A", "A6538C", "G6611A", "G6634A", "G6647A", "A6648C", "A6691C", "A6713G", "A6714C", "T6724C", "A6734G", "T6735A", "C6752A", "A6765C", "G6776A", "A6790C", "T6794C", "G6809A", "-6830G", "-6831G", "-6832G", "-6835T", "A6837-", "C6919T", "A6931T", "C6957T", "-6958C", "G6962A", "C6966T", "-6968T", "-6969G", "-6970G", "-6971A", "-6972G", "-6973C", "-6974A", "-6975A", "-6976T", "C6991-", "A7001-", "T7003-", "C7014T", "C7018T", "A7032G", "T7095C", "A7096T", "G7132A", "A7148C", "T7150G", "A7152G", "T7159C", "A7160G", "G7190A", "A7241C", "G7286A", "G7288A", "A7312G", "A7318C", "A7372G", "A7373C", "A7375G", "G7390A", "T7444C", "G7451A", "C7452T", "G7459A", "C7469A", "C7489T", "A7507G", "G7552A", "T7555C", "A7572G", "T7622A", "C7623A", "T7624C", "G7628A", "A7629G", "C7645T", "G7657A", "G7689A", "T7691A", "T7692C", "G7717A", "A7734G", "A7756G", "A7763C", "A7782G", "T7867C", "A7874G", "T7939A", "C7988A", "A7990C", "G7997A", "C7999T", "C8005A", "T8016C", "T8035C", "T8155C", "T8164C", "T8206C", "G8208A", "A8258T", "A8276C", "A8288G", "T8290C", "G8328T", "G8329A", "T8348A", "A8354G", "G8365A", "T8371A", "T8375G", "T8411C", "G8418A", "G8427A", "C8450T", "A8455C", "A8459C", "G8462A", "A8519G", "C8523G", "A8533G", "G8534A", "G8561A", "T8583A", "A8586C", "A8623T", "A8636T", "A8656G", "G8678C", "G8682A", "T8687C", "T8759G", "G8784C", "G8798A", "A8829T", "G8834A", "G8846A", "A8876T", "G8882A", "A8901C", "G8902C", "G8918C", "G8970A"], "INT": ["K14R", "S17T", "R20K", "V72I"], "RT-p51": ["I178M", "T200A", "L283I", "P294T", "A322T", "I375V", "K390R"], "RT-p66": ["I178M", "T200A", "L283I", "P294T", "A322T", "I375V", "K390R", "E449D", "A466V", "S468P", "K530R"], "gp120": ["N1K", "T3N", "E4D", "L57F", "L58M", "Q59P", "N102H", "N107K", "N111A", "S112R", "N113A", "S116N", "-117I", "E118K", "K119E", "-120Q", "N136S", "K150I", "L151S", "V153I", "I154T", "P155K", "S158G", "D159N", "N160S", "E183D", "F195Y", "D202N", "T208M", "A253T", "E265T", "K287A", "D294E", "Q300K", "N304T", "E319K", "-326G", "T368I", "T371I", "-372W", "T374N", "T387I", "K393R", "K404R", "L414P", "N433S", "T436E", "D446N", "I463L", "V478I"], "gp41": ["I24L", "A50M", "Q56K", "K90R", "S107N", "D109S", "M118I", "E119Q", "G129D", "L130T", "K144R", "K154Q", "I191V", "Q229N", "D232N", "G235S", "V238A", "S302N", "I319L", "I325L", "I329V", "R342I"], "nef": ["S8N", "E38A", "R39S", "Q61E", "E64G", "S81N", "R82Q", "K94M", "E98D", "V114I", "F139L", "V148L", "S163C", "M168I", "K178N", "S187P"], "p17": ["I34L", "G49A", "S67A", "A83V", "I104V", "K113Q", "A121G", "S125N", "V128A"], "p24": ["L83V", "E128D", "T171V", "G208A"], "p6": ["P23S", "Q25H", "L35M", "S50*"], "p7": ["R10K"], "pro": ["L10V", "G16E", "G40E", "L63V"], "rev": ["S8N", "E11D", "L18V", "S31T", "A47E", "R50K", "H51Y", "R53K", "Y63H", "S106P"], "tat": ["K24T", "R29Q", "D61N", "I64S", "L69V", "P77H"], "vif": ["M29I", "H30N", "V51I", "T63S", "P156T", "I159V", "T180I", "S186N"], "vpr": ["P37T", "S96P"], "vpu": ["S3P", "Q5H", "A16G", "G59E", "S62Y"]}, "labels": {"aa": "INT: K14R, S17T, R20K, V72I; RT-p51: I178M, T200A, L283I, P294T, A322T, I375V, K390R; RT-p66: I178M, T200A, L283I, P294T, A322T, I375V, K390R, E449D, A466V, S468P, K530R; gp120: N1K, T3N, E4D, L57F, L58M, Q59P, N102H, N107K, N111A, S112R, N113A, S116N, -117I, E118K, K119E, -120Q, N136S, K150I, L151S, V153I, I154T, P155K, S158G, D159N, N160S, E183D, F195Y, D202N, T208M, A253T, E265T, K287A, D294E, Q300K, N304T, E319K, -326G, T368I, T371I, -372W, T374N, T387I, K393R, K404R, L414P, N433S, T436E, D446N, I463L, V478I; gp41: I24L, A50M, Q56K, K90R, S107N, D109S, M118I, E119Q, G129D, L130T, K144R, K154Q, I191V, Q229N, D232N, G235S, V238A, S302N, I319L, I325L, I329V, R342I; nef: S8N, E38A, R39S, Q61E, E64G, S81N, R82Q, K94M, E98D, V114I, F139L, V148L, S163C, M168I, K178N, S187P; p17: I34L, G49A, S67A, A83V, I104V, K113Q, A121G, S125N, V128A; p24: L83V, E128D, T171V, G208A; p6: P23S, Q25H, L35M, S50*; p7: R10K; pro: L10V, G16E, G40E, L63V; rev: S8N, E11D, L18V, S31T, A47E, R50K, H51Y, R53K, Y63H, S106P; tat: K24T, R29Q, D61N, I64S, L69V, P77H; vif: M29I, H30N, V51I, T63S, P156T, I159V, T180I, S186N; vpr: P37T, S96P; vpu: S3P, Q5H, A16G, G59E, S62Y"}}}]}]}]}, {"name": "other_NODE_0000033", "node_attrs": {"div": 0.15437, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A378G", "A435C", "G471C", "A507C", "G599A", "T614G", "G656A", "A672C", "C714-", "A977G", "C1362T", "T1514C", "T1517C", "A1835G", "C2098A", "C2776T", "G2887A", "A2951G", "A2985C", "C2996T", "T3826C", "C3962T", "A4021C", "A4109G", "C4110T", "G4177T", "G4769T", "T5091C", "A5463G", "T5576A", "T5584C", "-5799T", "A6403G", "A6689-", "A6693-", "T6888C", "A6905G", "A7001-", "T7003-", "G7004-", "T7009-", "T7165-", "A7755C", "G7929T", "A8036G", "T8103C", "T8156C", "G8157T", "-8370A", "G8372A", "G8414T", "A8456T", "T8603C", "A8608T", "A8636T", "C8652A", "C8796G", "A8812C", "C8867T", "C8868G", "C8916A"], "INT": ["T112V"], "RT-p51": ["E297A"], "RT-p66": ["E297A"], "gp120": ["S161N", "R351G"], "gp41": ["H209L", "L210I", "I245A", "V267A", "W285L"], "nef": ["E24P", "Q104K", "Q152E", "P176E"], "p17": ["K15A", "V46L", "Q127-"], "p6": ["A39T"], "pro": ["I13V"], "rev": ["L18I", "N30K", "L103S"], "tat": ["V67D", "S70P", "A74L"], "vif": ["R92K"]}, "labels": {"aa": "INT: T112V; RT-p51: E297A; RT-p66: E297A; gp120: S161N, R351G; gp41: H209L, L210I, I245A, V267A, W285L; nef: E24P, Q104K, Q152E, P176E; p17: K15A, V46L, Q127-; p6: A39T; pro: I13V; rev: L18I, N30K, L103S; tat: V67D, S70P, A74L; vif: R92K"}}, "children": [{"name": "other_NODE_0000034", "node_attrs": {"div": 0.16859000000000002, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A399C", "C467T", "G518A", "A645C", "A774C", "G1016A", "A1142T", "G1256A", "G1313A", "A1400G", "G1452T", "-1456C", "A1461G", "G1486A", "G1794A", "A1841G", "G1981A", "T2266C", "C2326T", "T2431G", "T2605C", "G2686A", "G2710A", "G2722A", "A2755G", "T2770C", "G2830A", "G2926A", "A3043G", "G3091A", "T3132A", "G3205A", "G3631A", "C3799T", "C3889T", "G3925A", "A4495G", "C4576T", "G4642A", "C4652A", "C4665T", "A4694C", "G4695A", "G4737A", "A4782G", "C4911A", "G4913A", "C4976T", "C5019T", "A5167G", "A5187G", "G5226A", "C5294T", "G5412T", "T5484A", "T5707G", "A5728T", "A5781G", "T5788G", "G5842A", "-5861G", "A5866C", "C5917A", "T5956A", "C5980T", "A6001G", "G6121A", "T6151C", "-6213T", "-6214G", "-6215A", "-6225C", "C6253A", "T6298C", "A6333C", "A6338-", "G6611A", "A6664G", "A6773G", "-6836A", "C6850A", "A6858C", "G6948A", "T6952A", "G7055A", "G7309A", "G7426A", "A7477G", "G7492A", "T7597C", "C7699T", "A7722T", "C7930T", "C7931A", "T8037C", "C8093A", "T8209C", "G8242A", "T8277C", "G8329A", "G8387T", "A8413G", "A8426T", "T8451C", "A8465G", "T8492C", "A8604G", "C8607T", "C8666G", "A8701T", "A8794G", "G8798A", "A8829T", "C8869A", "G8873C", "G8882A", "C8903T", "T8914G"], "INT": ["T218I"], "RT-p51": ["Q174K", "F346H"], "RT-p66": ["Q174K", "F346H"], "gp120": ["T3A", "E4D", "D34E", "P57E", "-112T", "-115T", "D159S", "A253T", "N312K", "-328N", "M345T", "E401K"], "gp41": ["N140I", "Q213S", "L264I", "G326C"], "nef": ["E28D", "A53P", "S88G", "H89F", "Y120F", "D151R", "S163C"], "p17": ["L61I", "R91K", "D93E", "I104L"], "p2": ["-10S"], "p24": ["I15L"], "p7": ["R7K"], "pro": ["I15V", "D35E"], "rev": ["P28Y"], "vif": ["R19N", "N22K", "H27Y", "K36N", "G37R", "V51I", "I66V", "L109I"], "vpu": ["L61A", "-70E", "-72G", "V79I"]}, "labels": {"aa": "INT: T218I; RT-p51: Q174K, F346H; RT-p66: Q174K, F346H; gp120: T3A, E4D, D34E, P57E, -112T, -115T, D159S, A253T, N312K, -328N, M345T, E401K; gp41: N140I, Q213S, L264I, G326C; nef: E28D, A53P, S88G, H89F, Y120F, D151R, S163C; p17: L61I, R91K, D93E, I104L; p2: -10S; p24: I15L; p7: R7K; pro: I15V, D35E; rev: P28Y; vif: R19N, N22K, H27Y, K36N, G37R, V51I, I66V, L109I; vpu: L61A, -70E, -72G, V79I"}}, "children": [{"name": "KX907411", "node_attrs": {"div": 0.23935, "accession": "KX907411", "clade_membership": {"value": "other"}, "country": {"value": "TZ"}, "date": {"value": 2005.0}, "Strain_name": {"value": "CO6577V5"}, "LANL_subtype": {"value": "CRF41_CD"}}, "branch_attrs": {"mutations": {"nuc": ["G407A", "T422C", "A423C", "G424A", "C435A", "C476T", "C507A", "C525T", "A530G", "T534G", "C537A", "C558T", "C603G", "G607A", "G608A", "A620G", "G629A", "T641G", "A647G", "C672A", "G677A", "A678G", "A697C", "A699G", "-714C", "A725G", "C731T", "A791G", "A815G", "G818A", "C827T", "A836G", "T852A", "C897T", "C902T", "C950T", "A959G", "A965G", "C974T", "G977A", "T992G", "A1002C", "A1017C", "G1019A", "A1025C", "A1035G", "T1037G", "G1077C", "G1078A", "C1118T", "A1124G", "G1199A", "A1205G", "A1230C", "T1244C", "C1245T", "G1268A", "C1304A", "A1339G", "G1346A", "T1422C", "A1454C", "-1455T", "-1458A", "-1459C", "-1460T", "G1487A", "C1491T", "G1498A", "A1500C", "T1501C", "G1503A", "G1508A", "A1526G", "A1529G", "A1532G", "G1568A", "A1595T", "C1613T", "A1622G", "A1643G", "T1679C", "G1687A", "A1691G", "C1730T", "G1736A", "C1745A", "C1749T", "C1756A", "G1757A", "G1760A", "G1766A", "C1768A", "A1772G", "G1773A", "A1781G", "A1804G", "A1838G", "A1839C", "A1840G", "A1907G", "T1954C", "C1985T", "T1986C", "A1988G", "T1996C", "A2005T", "A2007G", "G2008A", "A2063T", "T2080C", "T2083C", "T2116G", "A2127G", "G2134A", "G2155A", "C2211T", "A2215T", "G2273A", "T2278C", "A2305G", "C2353T", "A2380G", "A2386T", "G2431A", "G2456T", "C2464A", "C2467T", "G2473A", "C2503T", "A2566G", "C2584T", "C2596T", "A2616G", "C2708T", "C2720T", "G2828A", "G2833T", "C2845A", "G2847C", "C2848A", "T2885C", "T2899C", "G2914A", "A2919G", "A2925G", "A2929C", "T2935C", "C2939T", "T2940G", "G2951A", "A2962G", "C2975T", "A2980G", "C2985A", "G2995A", "G3088A", 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"K85E"], "vif": ["Y30H", "F39L", "E45D", "R47H", "D61E", "K63R", "H73N", "D78E", "K92R", "D101G", "S116A", "H127Q", "S130T", "E134I", "K141Q", "T155K", "V166I", "K179M"], "vpr": ["E6N", "N28S", "G41Q", "Y45F", "E55A", "I84F", "A93S"], "vpu": ["E5Q", "V7T", "A15V", "K32R", "L34R", "K35R", "R41Y", "I43L", "A61E", "E62-", "G68-", "-69V", "-71M", "L74H", "D78N"]}, "labels": {"aa": "INT: M50L, I72V, I84M, I113V, T124A, A125T, I203M, A265V, G283S; RT-p51: K11R, T39I, E40D, V60I, D121Y, D123E, K174R, Q245K, D250E, S251T, K275R, K277R, Q278H, L282C, P294S, A297E, G335D, P345Q, R356K, A360T, T377Q, S379C, V435M; RT-p66: K11R, T39I, E40D, V60I, D121Y, D123E, K174R, Q245K, D250E, S251T, K275R, K277R, Q278H, L282C, P294S, A297E, G335D, P345Q, R356K, A360T, T377Q, S379C, V435M, S468P, L469F, H483N, S534A, V548I, S554Q; gp120: T21K, D29E, K31R, A32S, E34K, T35K, V37A, V40I, E59G, K69E, N71D, E74D, N105A, -106I, -107S, -109S, N111A, -114N, -116N, -117S, -118T, -119M, -120M, -121G, -122N, -123A, -124E, E125T, I126R, K127M, I133M, E136V, I137V, K143Q, E144V, V153I, P155S, N160T, N161D, S162-, T172A, S181T, N201R, K204Q, K212T, E247K, D251G, K254N, V264I, E265A, N272Y, R276I, S278R, H280-, I281-, G284-, P285-, G286-, Q287-, A288-, F289-, Y290-, A291-, T292-, G293-, D294-, T308S, N311S, T313M, K315R, E319T, E323G, H324L, F325I, N327-, I331E, F333K, N334F, P341L, T344K, N349S, K361N, S365N, -368N, -369S, -371S, -372W, -373T, -374G, -375E, -376N, -377N, -378S, L388I, K401R, S412E, N414E, G431D, N432G, -433G, T436N, T437S, D446N, R448Q, Q479E; gp41: V2I, I4L, V7M, I24M, T25A, I62V, L91H, L108V, D113K, E119Q, N133S, S165T, N166K, V187I, F206L, T212N, P219L, E220G, G221R, V235I, S256C, L263F, I266V, A267T, I270V, R276H, Q294R, N298K, N305D, T307I, A308S, I318A, I319L, V322I, I329V, L330V, H331N, I332V, R334V, A343L; nef: G3A, M20I, R21K, P24S, Q35R, K39R, A49S, A50S, E64S, E65G, Q125H, I133V, C142P, N161T, E177D, M182I, K184R, R188Q, R191H, L198I; p17: R30Q, L34I, S67A, L68I, L75F, Q90E, D102E, T115A, D121A, T122A, -127Q; p2: A11S, -12T, -13A; p24: S41T, H87Q, I91L, M96L, E98D, S102G, G116Q, E180D, K203R; p6: S3N, P23S, P25-, D32N, K42R; p7: Q9S, R11K, I12P, V13I; pro: K14A, N37D, L63S, I64V, K70R, M89L; rev: E11D, V16I, I18L, I21V, P31L, R39K, A68P, L73F, Q74L, T82H, L83I, D84G, C85D, D88G, C89G, P100T, V109I, K115E, *117E; tat: E2D, K19R, Y26H, Q35P, K40N, T58P, S62N, D67G, L69I, K71E, P77T, P81Q, P84S, K85E; vif: Y30H, F39L, E45D, R47H, D61E, K63R, H73N, D78E, K92R, D101G, S116A, H127Q, S130T, E134I, K141Q, T155K, V166I, K179M; vpr: E6N, N28S, G41Q, Y45F, E55A, I84F, A93S; vpu: E5Q, V7T, A15V, K32R, L34R, K35R, R41Y, I43L, A61E, E62-, G68-, -69V, -71M, L74H, D78N"}}}, {"name": "other_NODE_0000035", "node_attrs": {"div": 0.21247000000000002, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A491G", "T495A", "A509G", "G519A", "G524A", "T536C", "G542A", "A557G", "T567C", "T635C", "T641C", "G644A", "A669C", "C688A", "C700A", "A704-", 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"A3387C", "G3442A", "T3449C", "T3450A", "A3451G", "C3500A", "C3508A", "G3523A", "G3529A", "T3541C", "G3553A", "T3567C", "A3595G", "G3643A", "C3649T", "G3667A", "A3684G", "G3694A", "A3755G", "A3772G", "T3779C", "G3825A", "C4015T", "A4054G", "C4149T", "C4159A", "C4195A", "T4216C", "T4258C", "A4273G", "C4381T", "C4471A", "T4543A", "A4643T", "A4646T", "T4702A", "T4772A", "A4773G", "A4786C", "A4817G", "A4858T", "G4861A", "A4865G", "T4868C", "C4871A", "T4969G", "T5018C", "A5049G", "A5051T", "T5062C", "T5073G", "G5086A", "A5094G", "C5095T", "C5168A", "T5188A", "T5221C", "A5230G", "A5236G", "T5237C", "G5246A", "T5293A", "A5336C", "T5357A", "C5371G", "C5398A", "T5415A", "A5446C", "G5482A", "C5490T", "C5491T", "A5496G", "A5499G", "C5511T", "C5530A", "G5546C", "C5554T", "A5556C", "G5558A", "C5567A", "C5611G", "-5612T", "A5621C", "A5625-", "G5653C", "C5654T", "A5659C", "G5668A", "T5687A", "A5706G", "G5717A", "A5720G", "G5725A", "T5789C", "-5809G", "-5810G", "G5830A", "C5831T", "C5834T", "T5836G", 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"A8076G", "G8079A", "G8098A", "A8104G", "G8105A", "G8114C", "C8120-", "T8121-", "T8122-", "C8123A", "T8124G", "G8130T", "C8131G", "T8164C", "C8167T", "C8168A", "G8170A", "T8203C", "G8219A", "G8245A", "G8254A", "G8255A", "G8264A", "G8280T", "A8288T", "T8290A", "C8293T", "A8323C", "G8335A", "T8411A", "G8412C", "A8432G", "A8469G", "A8486T", "G8490C", "A8525G", "C8543T", "T8567A", "C8684T", "G8717A", "T8770A", "G8846A", "G8848A", "G8871C", "C8904T", "G8905C", "T8915A"], "INT": ["S17N", "V31I", "M50I", "S119T", "A125V", "I135V", "I201V", "I218L", "K219N", "N222K", "D232E", "D256E"], "RT-p51": ["E122K", "S162C", "K173R", "I178M", "E248D", "T286V", "E291D", "V292I", "Q334H", "G359S", "K431T"], "RT-p66": ["E122K", "S162C", "K173R", "I178M", "E248D", "T286V", "E291D", "V292I", "Q334H", "G359S", "K431T", "L452Q", "L469I", "D471E", "L491S", "K530R"], "gp120": ["I56V", "E78T", "Q86E", "-107K", "R138K", "Y145S", "D157N", "N160S", "N161T", "S162E", "L249I", "T255N", "S263T", "Q287K", "T308E", "K315N", "A318K", "N334K", "Q335P", "S347M", "S360T", "S365-", "W367-", "S370-", "M406I", "S412A", "K416N", "L424M", "L425I", "T437N", "K462Q", "K472R", "K474R"], "gp41": ["Q66R", "R122K", "G129D", "L130T", "N133K", "E148D", "E151A", "I193V", "R231K", "N239S", "S251N", "H258R", "R259H", "A268T", "V271L", "L273R", "L274G", "G275L", "R277G", "L289I", "A306T", "V321I", "C326F", "I329L"], "nef": ["E38D", "I43V", "A50H", "E98D", "F143Y", "N157T", "M168I", "S169N", "E177H", "R188S"], "p17": ["S54T", "G62R", "C87F", "K112Q", "A118E", "T122K", "S124-", "S125-", "S126-"], "p2": ["-12V"], "p24": ["G116A"], "p6": ["Q30T", "L35Q", "Y36S"], "pro": ["L10I", "K20R", "I62V", "H69Q"], "rev": ["S5R", "E11Q", "K14T", "A15T", "P67S", "T82S", "D84N", "S86D", "C89S", "T91K", "S92G", "G93T", "T94E", "Q95G", "V97L", "S106P", "P107C", "A108T"], "tat": ["L8I", "H13Q", "K24Q", "V36I", "R57T", "Q60Y", "T64N"], "vif": ["F39Y", "K63E", "K67T", "K91L", "S95R", "I128R", "T155A", "I159T", "L163V", "R167K", "T170V", "K181R"], "vpr": ["L22I", "N28R", "G41N", "Y45H", "E48N", "Q77H", "A89G"], "vpu": ["Q2V", "E5A", "A8G", "A16L", "I18L", "V21I", "F27Y", "L34V", "R37K", "K38R", "D40N", "R41W", "V65A", "M67L", "-71L", "A75I", "P76L", "W77G", "D81N"]}, "labels": {"aa": "INT: S17N, V31I, M50I, S119T, A125V, I135V, I201V, I218L, K219N, N222K, D232E, D256E; RT-p51: E122K, S162C, K173R, I178M, E248D, T286V, E291D, V292I, Q334H, G359S, K431T; RT-p66: E122K, S162C, K173R, I178M, E248D, T286V, E291D, V292I, Q334H, G359S, K431T, L452Q, L469I, D471E, L491S, K530R; gp120: I56V, E78T, Q86E, -107K, R138K, Y145S, D157N, N160S, N161T, S162E, L249I, T255N, S263T, Q287K, T308E, K315N, A318K, N334K, Q335P, S347M, S360T, S365-, W367-, S370-, M406I, S412A, K416N, L424M, L425I, T437N, K462Q, K472R, K474R; gp41: Q66R, R122K, G129D, L130T, N133K, E148D, E151A, I193V, R231K, N239S, S251N, H258R, R259H, A268T, V271L, L273R, L274G, G275L, R277G, L289I, A306T, V321I, C326F, I329L; nef: E38D, I43V, A50H, E98D, F143Y, N157T, M168I, S169N, E177H, R188S; p17: S54T, G62R, C87F, K112Q, A118E, T122K, S124-, S125-, S126-; p2: -12V; p24: G116A; p6: Q30T, L35Q, Y36S; pro: L10I, K20R, I62V, H69Q; rev: S5R, E11Q, K14T, A15T, P67S, T82S, D84N, S86D, C89S, T91K, S92G, G93T, T94E, Q95G, V97L, S106P, P107C, A108T; tat: L8I, H13Q, K24Q, V36I, R57T, Q60Y, T64N; vif: F39Y, K63E, K67T, K91L, S95R, I128R, T155A, I159T, L163V, R167K, T170V, K181R; vpr: L22I, N28R, G41N, Y45H, E48N, Q77H, A89G; vpu: Q2V, E5A, A8G, A16L, I18L, V21I, F27Y, L34V, R37K, K38R, D40N, R41W, V65A, M67L, -71L, A75I, P76L, W77G, D81N"}}, "children": [{"name": "AJ249235", "node_attrs": {"div": 0.25719000000000003, "accession": "AJ249235", "clade_membership": {"value": "other"}, "country": {"value": "CD"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97ZR_EQTB11"}, "LANL_subtype": {"value": "K"}}, "branch_attrs": {"mutations": {"nuc": ["G350T", "T377C", "G378A", "C379A", "G394A", "T422C", "A425G", "G480A", "G481A", "A495G", "C496T", "A548C", "A551G", "A562G", "A571T", "T596G", "A599G", "G608T", "G612C", "A619G", "A620G", "A664G", "G667C", "A688G", "G690A", "C691A", "C719T", "G749T", "G803T", "T978A", "A980G", "T992A", "G1019A", "G1028T", "C1061T", "G1077A", "T1142G", "A1157G", "A1240G", "A1242G", "C1243T", "C1292A", "A1327G", "A1340G", "C1350T", "G1394A", "A1418G", "T1457-", "-1460C", "C1490T", "G1503A", "A1536C", "C1550T", "G1589A", "C1613T", "A1614T", "A1643G", "A1644T", "T1653C", "C1654T", "C1656A", "G1661A", "G1663A", "G1673A", "G1687A", "C1724T", "G1734-", "A1735-", "G1736-", "T1741A", "A1742G", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "C1756T", "G1760A", "G1766A", "C1768T", "C1775T", "A1776C", "C1785G", "A1786G", "A1819G", "A1826G", "G1912A", "A1915G", "C1985T", "T1986G", "A1990G", "A2002G", "A2023G", "T2080G", "A2198G", "C2199T", "A2203G", "T2269C", "G2310T", "A2349C", "A2374G", "G2428A", "C2464T", "G2518A", "G2539A", "C2575T", "C2579T", "A2613G", "A2614G", "A2626T", "A2633T", "T2659C", "A2693G", "A2727G", "A2788G", "G2869A", "A2907T", "T2908C", "G2914A", "C2960T", "T3049C", "C3140T", "G3166A", "C3207T", "A3218G", "C3225T", "A3226G", "C3266T", "A3291G", "A3316G", "T3433C", "G3477A", "G3494A", "C3499A", "A3682C", "T3730C", "G3755T", "A3952G", "A3961G", "G3997A", "C4006T", "T4075C", "A4107G", "G4176A", "T4276G", "C4321T", "G4366A", "A4369G", "A4498C", "G4532-", "A4533-", "C4534-", "A4535-", "A4536-", "A4543G", "A4688G", "T4701C", "A4702G", "A4721C", "G4726A", "G4727T", "A4781G", "C4820A", "T4826C", "G4859A", "A4862G", "G4864A", "C4883T", "A4888G", "A4892G", "A4956C", "A5005C", "A5007C", "A5024G", "A5033T", "G5066A", "T5072G", "T5084C", "A5085C", "G5099A", "A5155G", "T5162A", "T5206C", "A5248C", "C5250A", "G5296A", "T5314C", "T5354C", "A5355T", "A5373G", "A5415G", "G5427A", "T5439C", "C5451T", "C5478T", "A5482C", "A5493G", "A5494C", "C5513G", "A5524G", "C5542A", "G5543C", "A5558C", "C5572A", "C5581A", "T5614C", "G5620A", "A5623-", "T5624-", "-5626G", "C5630G", "G5635A", "T5648C", "A5652G", "T5684C", "A5685C", "A5689C", "G5700A", "A5704G", "A5711G", "A5734T", "T5778C", "G5788A", "C5801G", "T5807C", "G5845A", "G5864A", "A6024T", "G6025T", "T6155C", "A6159C", "T6166C", "-6170G", "-6172A", "A6179G", "T6184C", "C6189T", "A6194G", "A6195C", "T6196A", "-6216C", "-6217A", "-6218T", "-6219C", "-6220A", "A6223T", "C6225A", "-6226C", "A6229G", "A6263C", "G6277A", "A6282G", "A6285T", "A6286G", "A6304G", "G6311A", "C6318A", "T6325G", "A6329T", "T6331A", "A6332T", "T6334A", "C6336T", "T6337C", "-6338T", "T6341G", "A6371G", "T6382C", "C6427T", "G6458A", "A6463C", "A6465C", "G6466A", "T6468G", "T6487C", "A6489C", "C6545T", "G6550A", "A6583T", "A6596G", "G6605A", "T6607G", "A6641G", "A6669G", "-6703A", "A6714G", "A6751G", "A6757G", "T6772C", "A6777G", "A6779C", "A6781G", "T6794G", "G6809A", "A6812G", "A6818G", "G6821A", "-6838C", "A6854C", "C6860T", "G6878C", "A6881G", "T6883C", "C6888G", "T6901C", "G6905A", "T6918C", "A6926G", "A6931T", "A6935G", "A6937C", "C6938A", "T6939C", "T6941G", "A6944G", "T6949C", "A6950-", "C6951-", "A6952-", "G6954-", "-6990A", "-6992A", "-6993G", "-6994A", "-6995G", "-6996G", "-6997A", "-6998G", "-6999G", "-7000A", "-7001A", "-7002G", "-7003A", "-7004G", "-7005G", "-7006C", "-7009A", "C7016A", "A7027G", "T7039A", "A7063G", "T7086C", "A7101C", "A7151G", "T7153C", "A7160G", "-7162G", "G7198A", "A7300G", "T7321G", "G7322T", "T7462A", "C7463A", "C7474T", "A7522G", "A7533G", "G7552A", "C7576T", "G7626A", "G7628A", "A7629G", "C7642G", "A7669G", "G7676A", "C7678T", "T7682C", "C7684T", "G7688A", "A7701G", "A7714G", "G7726A", "A7765G", "G7868A", "T7932C", "C7938G", "A7977G", "T8008G", "C8009A", "G8017C", "A8023G", "G8032T", "G8050A", "A8093G", "A8119C", "G8133A", "T8155C", "T8167G", "A8172T", "A8180G", "A8188G", "C8189A", "G8208A", "C8221T", "T8257C", "A8263G", "C8270T", "A8272C", "C8323T", "G8330C", "C8331T", "C8382T", "G8385A", "C8406A", "G8407A", "G8413C", "C8490T", "-8491T", "G8528A", "A8531C", "A8537C", "A8540G", "A8584T", "C8603G", "A8656G", "C8690T", "G8793A", "A8844G", "T8887A", "A8909G", "G8917A", "C8921T", "C8934A"], "RT-p51": ["T35V", "R72I", "Q85P", "E177D", "I180L", "T200A", "K211R", "Y271F", "H346Y", "M357I", "A371V", "I375V", "T377M", "E399G"], "RT-p66": ["T35V", "R72I", "Q85P", "E177D", "I180L", "T200A", "K211R", "Y271F", "H346Y", "M357I", "A371V", "I375V", "T377M", "E399G", "R461K", "V467I", "E529D"], "gp120": ["D4N", "E57V", "N102T", "-106V", "-109D", "T112I", "-114S", "-116D", "I137L", "K143R", "E144V", "V153I", "P155Q", "N157K", "I173V", "D202N", "K203N", "K204T", "F205C", "K212T", "N248D", "D251K", "T263A", "N272S", "K287R", "E308G", "K309Q", "L314V", "E319K", "K320E", "E323K", "N327-", "K334Q", "E342Q", "I343V", "T345R", "M347I", "G351R", "F355S", "N358D", "K361D", "L362-", "F363-", "N364-", "T366-", "L388I", "K404Q", "I411T", "N416T", "S418R", "-433D", "N437R"], "gp41": ["V7L", "H53Q", "L54M", "K77R", "L108Q", "D109S", "D113E", "E119Q", "D125S", "Y127H", "D129S", "K133R", "A189T", "I210T", "T212S", "S213P", "E225G", "I264V", "E272D", "R276K", "G278S", "Q290L", "S293G", "L296I", "S302N", "Q323Y", "L340F", "A343L"], "nef": ["P14S", "A15T", "R22K", "H50F", "E63D", "E65D", "Y81F", "K105R", "I168V", "M182K", "R192K", "L198M"], "p1": ["I5F", "S8L", "H9N", "G11E"], "p17": ["A15K", "R20Q", "G49N", "T54V", "K76R", "Y79F", "F87W", "K91S", "E93Q", "K95R", "K110R", "S111T", "K113Q", "E118G", "A119K"], "p24": ["L83M", "H87Q", "M96I", "A116T", "K170R", "T171V", "D187E", "K199R", "P207S"], "p6": ["S3N", "E19-", "I21K", "T22I", "P23T", "S24P", "P25S", "Q26L", "K27R", "T30M", "K33Q", "S36G", "N47S"], "p7": ["V13I", "I24L", "T50S"], "pro": ["I10V", "L63C", "I64M"], "rev": ["D9E", "E10Q", "T15P", "H53R", "S54E", "E57Q", "I59V", "T62S", "A68T", "K91Q", "G96E", "S103P", "C107D", "E111G", "T114D"], "tat": ["I36L", "K40Q", "S46C", "K50E", "R56T", "S61A", "Q66K", "L69I", "S75P", "P77A"], "vif": ["Y39R", "E45D", "R47N", "D78E", "R93K", "D101G", "I124L", "N140T", "K141Q", "K167Q", "N190S", "H192Q"], "vpr": ["L20I", "N41D", "T49N", "I84L", "R90G"], "vpu": ["S3P", "A5T", "I6-", "V10I", "V14A", "V26A", "I28L", "I33V", "K35R", "I43F", "A61T", "E66A", "L71T", "D80N"]}, "labels": {"aa": "RT-p51: T35V, R72I, Q85P, E177D, I180L, T200A, K211R, Y271F, H346Y, M357I, A371V, I375V, T377M, E399G; RT-p66: T35V, R72I, Q85P, E177D, I180L, T200A, K211R, Y271F, H346Y, M357I, A371V, I375V, T377M, E399G, R461K, V467I, E529D; gp120: D4N, E57V, N102T, -106V, -109D, T112I, -114S, -116D, I137L, K143R, E144V, V153I, P155Q, N157K, I173V, D202N, K203N, K204T, F205C, K212T, N248D, D251K, T263A, N272S, K287R, E308G, K309Q, L314V, E319K, K320E, E323K, N327-, K334Q, E342Q, I343V, T345R, M347I, G351R, F355S, N358D, K361D, L362-, F363-, N364-, T366-, L388I, K404Q, I411T, N416T, S418R, -433D, N437R; gp41: V7L, H53Q, L54M, K77R, L108Q, D109S, D113E, E119Q, D125S, Y127H, D129S, K133R, A189T, I210T, T212S, S213P, E225G, I264V, E272D, R276K, G278S, Q290L, S293G, L296I, S302N, Q323Y, L340F, A343L; nef: P14S, A15T, R22K, H50F, E63D, E65D, Y81F, K105R, I168V, M182K, R192K, L198M; p1: I5F, S8L, H9N, G11E; p17: A15K, R20Q, G49N, T54V, K76R, Y79F, F87W, K91S, E93Q, K95R, K110R, S111T, K113Q, E118G, A119K; p24: L83M, H87Q, M96I, A116T, K170R, T171V, D187E, K199R, P207S; p6: S3N, E19-, I21K, T22I, P23T, S24P, P25S, Q26L, K27R, T30M, K33Q, S36G, N47S; p7: V13I, I24L, T50S; pro: I10V, L63C, I64M; rev: D9E, E10Q, T15P, H53R, S54E, E57Q, I59V, T62S, A68T, K91Q, G96E, S103P, C107D, E111G, T114D; tat: I36L, K40Q, S46C, K50E, R56T, S61A, Q66K, L69I, S75P, P77A; vif: Y39R, E45D, R47N, D78E, R93K, D101G, I124L, N140T, K141Q, K167Q, N190S, H192Q; vpr: L20I, N41D, T49N, I84L, R90G; vpu: S3P, A5T, I6-, V10I, V14A, V26A, I28L, I33V, K35R, I43F, A61T, E66A, L71T, D80N"}}}, {"name": "AJ249239", "node_attrs": {"div": 0.2466, "accession": "AJ249239", "clade_membership": {"value": "other"}, "country": {"value": "CM"}, "date": {"value": 1996.0}, "Strain_name": {"value": "96CM_MP535"}, "LANL_subtype": {"value": "K"}}, "branch_attrs": {"mutations": {"nuc": ["A389G", "G424A", "A428G", "T473C", "G520C", "C525A", "A530G", "C537A", "C558A", "G579A", "A585G", "C586T", "G595T", "G607A", "A673G", "G683A", "A806G", "A815G", "T852A", "T885C", "G956T", "T1040C", "T1055C", "A1101G", "A1112G", "T1148C", "T1244C", "A1277G", "A1359T", "A1370G", "G1404A", "G1419A", "T1452C", "C1456T", "G1474A", "A1493T", "G1498A", "A1532G", "G1769C", "A1786C", "G1835A", "A2057C", "A2063C", "G2173A", "A2254G", "C2263T", "G2392A", "G2509A", "A2519G", "G2548A", "G2580A", "A2613T", "G2656A", "A2688C", "A2932G", "C2978T", "A3019G", "A3031G", "G3088A", "C3095A", "C3097T", "G3099A", "T3131C", "G3169A", "A3193G", "A3230G", "C3352T", "A3403G", "T3418C", "A3434C", "C3449A", "A3456G", "A3490G", "A3524G", "C3542T", "A3543G", "A3622G", "A3643T", "G3686A", "C3823T", "T3829C", "G3866A", "A3874C", "T3898C", "T4018C", "G4060A", "G4131C", "T4144C", "G4145A", "A4150G", "A4178G", "A4195G", "T4291C", "G4294A", "A4376G", "A4427T", "C4428T", "A4432C", "T4441A", "T4537C", "T4674C", "G4677A", "A4695C", "A4775G", "A4804T", "C4883A", "T4943A", "A4944G", "A4952G", "A4990G", "A5036C", "A5046G", "A5056G", "A5059G", "A5061C", "T5147A", "A5173G", "G5225A", "C5227T", "T5228C", "A5247C", "G5273C", "T5333C", "G5359C", "A5372G", "G5382T", "T5412C", "A5461C", "A5462G", "T5515A", "A5537C", "G5538C", "G5557A", "A5563G", "T5568C", "C5585G", "A5613G", "T5616C", "-5625T", "T5627-", "A5628-", "G5629T", "C5659T", "G5673A", "A5704T", "T5736A", "A5784G", "C5792A", "A5793G", "C5795A", "C5797T", "T5799G", "G5802A", "A5805C", "G5808T", "-5815G", "-5816A", "-5817A", "-5818C", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5839A", "G5858A", "C5859A", "C5869A", "A5918C", "A5956G", "C5958A", "A5959G", "A5983C", "T6026A", "T6046C", "A6124T", "A6131G", "A6167G", "-6170T", "T6171A", "-6172C", "G6175A", "A6176G", "A6177G", "C6178A", "A6180C", "T6181C", "C6183A", "A6186G", "T6187C", "A6197G", "T6199A", "-6200A", "-6201C", "-6202T", "-6203A", "-6204G", "-6205C", "-6206A", "-6207C", "-6208T", "-6209G", "-6210T", "-6211G", "G6214A", "-6216G", "-6217C", "A6221C", "-6226A", "G6280A", "A6283G", "A6303G", "G6314C", "A6320C", "A6322T", "T6328C", "A6330G", "C6333G", "-6338G", "G6339A", "T6343C", "G6380A", "G6391A", "T6395A", "T6457G", "A6465G", "A6475G", "G6481A", "G6647C", "-6697G", "G6725A", "T6763C", "T6787C", "A6789T", "A6790G", "A6798G", "C6800A", "A6801G", "A6814G", "T6815C", "G6819A", "C6826T", "-6833A", "-6834A", "-6835G", "-6838T", "A6839G", "A6840G", "T6849C", "T6863C", "G6871A", "A6884C", "C6885T", "T6895G", "G6906C", "T6925C", "T6949G", "-6953G", "-6955G", "-6956G", "-6957A", "-6958G", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964T", "-6965A", "-6966C", "-6967T", "C6991-", "A7007-", "C7008-", "A7033G", "C7064A", "C7087T", "A7095G", "C7096T", "A7108C", "A7155C", "A7157C", "-7162T", "A7219G", "A7273C", "A7313T", "C7328T", "G7333A", "A7428G", "G7508A", "C7625T", "T7630A", "G7640A", "C7658G", "A7685T", "G7689A", "G7717A", "T7722C", "C7747T", "T7796A", "C7801A", "G7835A", "T7863C", "C7921T", "C7940T", "C7949G", "C7951A", "G7957A", "G7997A", "C8005A", "A8023C", "C8080A", "G8087A", "C8103T", "T8113C", "A8168G", "A8241G", "T8268G", "C8320T", "T8321C", "G8388A", "A8409G", "T8414A", "T8426C", "G8427A", "A8455C", "A8458G", "G8487T", "-8491A", "G8590C", "G8666A", "C8699T", "A8762G", "G8794C", "G8808A", "T8813A", "A8823G", "T8843C", "G8880A", "G8945C"], "RT-p51": ["I142V", "C162H", "R173I", "H198P", "H334N", "G335D", "S379G"], "RT-p66": ["I142V", "C162H", "R173I", "H198P", "H334N", "G335D", "S379G", "N447H", "Q452K", "K454R", "T477A", "H483C", "E516D", "V531I", "S554A"], "gp120": ["A2N", "N5K", "T22P", "T35K", "L58M", "K93E", "N105D", "-106Y", "-109A", "N111S", "N113V", "-114V", "T115S", "-116P", "-117A", "K150R", "V154L", "I156L", "A176T", "S181T", "N201K", "K204R", "E265Q", "I281M", "A291T", "K312M", "N315S", "Q316R", "G322K", "-326K", "N328G", "K329-", "I332T", "S336P", "S337N", "T344L", "G351A", "-365E", "-367G", "-368E", "-369N", "-370G", "-371T", "T385-", "N414S", "N435T", "T436H"], "gp41": ["I4L", "L9F", "N42S", "V69I", "L108W", "D109E", "D113N", "D125G", "T128S", "I140T", "S165T", "N166K", "V178I", "V187A", "P216A", "D232N", "H259Q", "D262N", "A267V", "I289V", "E313G", "V322G"], "nef": ["V16I", "T23A", "P24R", "G29R", "D38A", "K39R", "A49S", "G83A", "R151A", "A156T", "N161D", "V180I", "E201D"], "p17": ["R30K", "R62T", "L64I", "L68I", "L75I", "V82I", "T84V", "K113R"], "p2": ["S10P", "A11V"], "p24": ["S41T", "E75D", "I124V", "T210S", "G225S", "V230I"], "p6": ["Q26R", "K27-"], "p7": ["R3K", "Q9H", "R11K"], "pro": ["V13I", "M89L"], "rev": ["S8P", "I18T", "Q24E", "K30N", "P31L", "T34S", "A37T", "R50K", "H53S", "I59L", "T62A", "L78I", "R80K", "S82N", "S89P"], "tat": ["E2D", "K29R", "Y47N", "Q54P", "S61N", "K63E", "P70R", "D80E", "P81Q", "G83D"], "vif": ["Y30H", "V31I", "H73L", "D99E", "I120V", "Y135C", "I154V", "K157R", "K158R", "T159P", "H187Q"], "vpr": ["Y15N", "N48T", "V57L", "R85P", "A93S"], "vpu": ["V7S", "G8-", "I33L", "E66D", "L67I", "D78N"]}, "labels": {"aa": "RT-p51: I142V, C162H, R173I, H198P, H334N, G335D, S379G; RT-p66: I142V, C162H, R173I, H198P, H334N, G335D, S379G, N447H, Q452K, K454R, T477A, H483C, E516D, V531I, S554A; gp120: A2N, N5K, T22P, T35K, L58M, K93E, N105D, -106Y, -109A, N111S, N113V, -114V, T115S, -116P, -117A, K150R, V154L, I156L, A176T, S181T, N201K, K204R, E265Q, I281M, A291T, K312M, N315S, Q316R, G322K, -326K, N328G, K329-, I332T, S336P, S337N, T344L, G351A, -365E, -367G, -368E, -369N, -370G, -371T, T385-, N414S, N435T, T436H; gp41: I4L, L9F, N42S, V69I, L108W, D109E, D113N, D125G, T128S, I140T, S165T, N166K, V178I, V187A, P216A, D232N, H259Q, D262N, A267V, I289V, E313G, V322G; nef: V16I, T23A, P24R, G29R, D38A, K39R, A49S, G83A, R151A, A156T, N161D, V180I, E201D; p17: R30K, R62T, L64I, L68I, L75I, V82I, T84V, K113R; p2: S10P, A11V; p24: S41T, E75D, I124V, T210S, G225S, V230I; p6: Q26R, K27-; p7: R3K, Q9H, R11K; pro: V13I, M89L; rev: S8P, I18T, Q24E, K30N, P31L, T34S, A37T, R50K, H53S, I59L, T62A, L78I, R80K, S82N, S89P; tat: E2D, K29R, Y47N, Q54P, S61N, K63E, P70R, D80E, P81Q, G83D; vif: Y30H, V31I, H73L, D99E, I120V, Y135C, I154V, K157R, K158R, T159P, H187Q; vpr: Y15N, N48T, V57L, R85P, A93S; vpu: V7S, G8-, I33L, E66D, L67I, D78N"}}}]}]}, {"name": "other_NODE_0000036", "node_attrs": {"div": 0.16518, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T49A", "A458G", "C462A", "C503A", "G508A", "G520A", "C525T", "T534G", "T539C", "C540A", "G644A", "G654A", "A655T", "C662T", "T668C", "A686G", "G743A", "C747G", "T748C", "G752A", "A785G", "A791G", "G818A", "C892T", "C893G", "C904T", "T917C", "A920G", "C926T", "G989A", "G1067A", "C1229T", "T1280C", "T1299C", "C1316T", "A1339G", "G1346A", "A1418G", "C1439T", "A1446C", "C1447A", "T1457-", "-1458A", "-1460C", "G1495A", "G1503-", "T1504-", "T1505-", "A1536C", "C1598T", "C1656A", "T1681C", "A1772G", "G1858A", "A1903C", "C2003A", "A2386T", "G2470A", "A2925G", "G3340A", "T3545C", "C4069A", "T4117C", "C4159A", "G4279A", "G4861A", "C5801T", "-5809G", "-5810G", "T5826C", "A6179G", "G6532A", "A6578G", "C6599T", "A6712G", "G6776A", "A6856T", "C6860T", "A7101G", "G7132A", "A7151-", "T7153-", "A7160G", "A7256G", "C7603T", "G7676A", "C7921T", "A8216G", "G8243T", "C8294A", "T8369C", "A8425C", "G8429A", "C8450T", "-8491C", "A8494C", "A8537G", "A8847T", "G8922A", "A8947T", "-8997G"], "RT-p51": ["K277R", "T286A"], "RT-p66": ["K277R", "T286A"], "gp120": ["N111-", "I242V", "G307R", "G322R", "K416R", "T436-", "I468V"], "gp41": ["D125N", "E151A", "V235I", "G314W", "I318V", "V321I", "V322G", "H331N"], "nef": ["E28A", "E98D", "S169C"], "p17": ["R58Q", "L61M", "G62E", "S67A", "Q69K", "E107I", "K113Q"], "p2": ["T8Q", "-13I"], "p24": ["L6A", "T54M", "T58I", "K203R"], "p6": ["L1P", "Q26-"], "p7": ["R10K", "V13-", "I24L"], "pro": ["H69K"], "tat": ["K24N"]}, "labels": {"aa": "RT-p51: K277R, T286A; RT-p66: K277R, T286A; gp120: N111-, I242V, G307R, G322R, K416R, T436-, I468V; gp41: D125N, E151A, V235I, G314W, I318V, V321I, V322G, H331N; nef: E28A, E98D, S169C; p17: R58Q, L61M, G62E, S67A, Q69K, E107I, K113Q; p2: T8Q, -13I; p24: L6A, T54M, T58I, K203R; p6: L1P, Q26-; p7: R10K, V13-, I24L; pro: H69K; tat: K24N"}}, "children": [{"name": "other_NODE_0000037", "node_attrs": {"div": 0.17758, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G615A", "G771T", "A776G", "A803G", "G1328A", "T1385C", "-1459A", "G1661A", "C1724T", "T1728A", "C1730G", "G1736A", "G1760A", "G1766A", "G1794A", "A2829T", "G3094A", "G3154A", "G3427A", "T3695G", "C4471T", "G4549A", "G4622A", "T4701G", "G4856A", "C4857A", "T4969G", "G5086C", "A5093G", "G5128A", "A5187G", "A5268C", "T5275G", "T5281C", "A5305G", "A5396G", "C5397A", "A5444C", "G5448T", "A5471T", "C5487T", "C5491A", "A5563C", "C5578T", "-5626G", "A5677T", "T5688A", "A5805G", "C5974T", "A6009G", "G6023-", "A6275G", "A6276T", "A6329G", "A6349G", "A6354G", "C6369T", "G6379A", "T6382C", "A6581G", "A6604G", "T6634G", "T6637A", "C6713A", "A6790C", "C6826A", "-6830G", "-6831G", "-6832G", "-6833A", "-6834A", "-6835T", "T6932A", "C7064A", "A7126G", "C7250T", "A7447T", "G7459A", "T7489C", "C7561T", "C7579T", "A7590C", "T7604A", "G7729A", "G7759A", "C7762T", "C7775T", "A7885G", "C7941A", "C7969A", "C7988A", "A7989G", "T8337A", "A8795T", "G8917A", "-8971C"], "INT": ["G283S"], "RT-p51": ["Q245V"], "RT-p66": ["Q245V", "S534A"], "gp120": ["N52S", "K141V", "N167S", "T172V", "I243V", "L249F", "N261K", "S278G", "Q287R", "H324Q", "-326G", "S360T", "N414Q"], "gp41": ["N96T", "I210L", "Q229R", "A245V", "L345Q"], "nef": ["T23A", "R178K", "R192T"], "p1": ["H9S"], "p17": ["V94I"], "p24": ["A14S", "I15M"], "p6": ["F17M", "S24P"], "rev": ["A47E"], "tat": ["N7R", "N12K", "N23T", "Y32L", "L39T", "S61D", "K63Q", "P68S"], "vif": ["I128R", "R167T"], "vpr": ["N28S", "E55A"], "vpu": ["T24S", "E63A"]}, "labels": {"aa": "INT: G283S; RT-p51: Q245V; RT-p66: Q245V, S534A; gp120: N52S, K141V, N167S, T172V, I243V, L249F, N261K, S278G, Q287R, H324Q, -326G, S360T, N414Q; gp41: N96T, I210L, Q229R, A245V, L345Q; nef: T23A, R178K, R192T; p1: H9S; p17: V94I; p24: A14S, I15M; p6: F17M, S24P; rev: A47E; tat: N7R, N12K, N23T, Y32L, L39T, S61D, K63Q, P68S; vif: I128R, R167T; vpr: N28S, E55A; vpu: T24S, E63A"}}, "children": [{"name": "other_NODE_0000038", "node_attrs": {"div": 0.23578, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C96T", "G121T", "-159A", "A161T", "A205G", "G206T", "T213C", "A214G", "T227A", "G361C", "C362T", "A386G", "C435T", "G452A", "C467T", "C483T", "T485G", "A492T", "T495G", "A513C", "C531T", "A554G", "A569G", "G579A", "C583T", "C590T", "A592G", "T593G", "T596C", "G614C", "T635C", "T641C", "A645C", "A654G", "A697C", "A699G", "G703C", "C713T", "A715-", "G716-", "G717-", "T718-", "C719-", "A720-", "G721-", "C722-", "T728C", "A806G", "C827T", "T852A", "A866G", "C875T", "T926A", "A932G", "T944G", "T978G", "T1003A", "A1022G", "T1040C", "A1134G", "A1142G", "T1182C", "G1192A", "C1220T", "C1245T", "A1247G", "G1256A", "G1260T", "T1271G", "C1304A", "T1322C", "T1335C", "G1388A", "A1391G", "C1403A", "A1412G", "G1424A", "A1442G", "A1448C", "A1449C", "T1451G", "G1452T", "A1454C", "C1492A", "A1493G", "A1495G", "G1498C", "T1502A", "G1508A", "C1517T", "T1574C", "A1580G", "A1586G", "A1592C", "T1598C", "C1613T", "T1646C", "A1657G", "G1673C", "A1694G", "G1697A", "G1732A", "T1741C", "C1749T", "T1752C", "A1771G", "A1780G", "G1784A", "C1826T", "T1828A", "T1854C", "A1857T", "T1864C", "G1912A", "T1957C", "G1972A", "A2007G", "A2057C", "T2071C", "A2098T", "G2155A", "A2194C", "A2198G", "C2199T", "T2257C", "A2293G", "A2317G", "A2419C", "G2456C", "C2467T", "T2499C", "T2542C", "A2626C", "G2656A", "G2714C", "G2878A", "T2908C", "G2926A", "C2942A", "G2951A", "G2969A", "T3022A", "C3023T", "G3046A", "A3058G", "G3093A", "A3097G", "C3100A", "G3127T", "G3162A", "T3197C", "C3225T", "A3293G", "A3409G", "T3433C", "T3436C", "G3439A", "G3473A", "G3477A", "A3487G", "T3541C", "T3544G", "G3556A", "G3631A", "C3688T", "C3756G", "G3796A", "A3805G", "A3808G", "C3823T", "G3846A", "T3850C", "T3853C", "G3866A", "C3940T", "A4045G", "G4060A", "A4105G", "A4150C", "T4153A", "C4162A", "G4175A", "G4176A", "A4178G", "A4182C", "G4183A", "G4186A", "A4189G", "C4195A", "T4216C", "A4228G", "A4264G", "A4270C", "A4273G", "T4288C", "A4306G", "C4381T", "A4391T", "T4412C", "A4498T", "G4516A", "C4534T", "T4543C", "A4555G", "G4573A", "G4597A", "A4687G", "A4688G", "A4692G", "A4693C", "T4702G", "T4703G", "C4715T", "A4721T", "T4730C", "A4785G", "A4786C", "T4793C", "G4802A", "C4820T", "G4835A", "A4858G", "A4865C", "C4871G", "A4888G", "C4890A", "A4892G", "T4914C", "A4937G", "T4943C", "T4985C", "G4986A", "A4988T", "T5018C", "A5051T", "A5057G", "G5066A", "T5072C", "G5087A", "A5119G", "T5224C", "A5233G", "A5236G", "A5272G", "T5292C", "T5319A", "A5335G", "T5356C", "A5366C", "G5370A", "A5397G", "A5432G", "G5437C", "T5484G", "T5492C", "G5501C", "A5537G", "G5538A", "A5548T", "A5556G", "G5558A", "C5567A", "C5584T", "A5598G", "A5601T", "C5611T", "-5612T", "G5620C", "G5629A", "C5630G", "A5631C", "A5646G", "C5727T", "G5730A", "A5746G", "G5747C", "G5775A", "T5778C", "T5787A", "G5791T", "C5826T", "C5827G", "T5828C", "G5845A", "T5850C", "C5851A", "-5861G", "C5862A", "A5863T", "G5864A", "A5866G", "A5867G", "A5868G", "C5869A", "T5870A", "T5871A", "C5917T", "C5920T", "A5935C", "A5938G", "A6020G", "A6024-", "A6025-", "G6028C", "G6029T", "A6030T", "T6064C", "G6079A", "G6099A", "T6101C", "G6133A", "T6151C", "C6153A", "T6154A", "-6170T", "T6171A", "-6172T", "A6180G", "T6181A", "T6184C", "C6189A", "C6190T", "-6212G", "-6213T", "-6214G", "-6215A", "-6216T", "-6217G", "-6218G", "-6219A", "-6220G", "A6221G", "-6222A", "-6225G", "-6226A", "C6247T", "A6261G", "A6266T", "G6267C", "G6269A", "A6278C", "A6279G", "A6282G", "T6287A", "C6293T", "T6295A", "A6304C", "G6311T", "C6317T", "T6347C", "T6351C", "A6420T", "A6430G", "G6466A", "A6478G", "C6482G", "A6508G", "A6525G", "A6535G", "C6545T", "G6547A", "C6548T", "G6550A", "G6577A", "G6605A", "G6647A", "A6649C", "A6654C", "C6660T", "A6686G", "-6689A", "-6693A", "-6697G", "C6707T", "C6708T", "A6709T", "G6716A", "C6721A", "A6734G", "T6735A", "T6745C", "A6757G", "A6767C", "T6769C", "G6771C", "A6775G", "A6779C", "A6799G", "C6857A", "A6858G", "A6859T", "A6913G", "A6935C", "-6956A", "-6958T", "-6959G", "-6960A", "-6962A", "-6964T", "-6965A", "-6966A", "-6967T", "-6968T", "-6971A", "-6972A", "-6973T", "-6974A", "-6975C", "-6976C", "-6977G", "-6978C", "-6980A", "-6981A", "-6982T", "-6984T", "-6987A", "-6988T", "-6989A", "-6990A", "C6991T", "-6992A", "-6993C", "-7006C", "-7009A", "A7032G", "A7040G", "T7047G", "G7054A", "G7088A", "C7089G", "A7090T", "A7106T", "C7127T", "A7135C", "A7148C", "-7151G", "-7153C", "-7162C", "-7164C", "-7165T", "G7168A", "A7186G", "G7190A", "G7197T", "A7238G", "A7306T", "T7321A", "G7322A", "T7403C", "G7441A", "G7508A", "G7517A", "G7519A", "A7540G", "A7604G", "C7605A", "A7620G", "G7633T", "G7660A", "A7666T", "A7677G", "G7688A", "G7689A", "C7699T", "A7701C", "G7726A", "A7764C", "G7835A", "A7855G", "G7868A", "T7968C", "T8007A", "G8010T", "T8016C", "G8017C", "A8029G", "G8030A", "C8033A", "A8043T", "C8103T", "T8112C", "C8189T", "A8204G", "T8209C", "C8213T", "T8215C", "C8221A", "A8227C", "T8243G", "A8258G", "T8265C", "G8267T", "T8277C", "T8279G", "T8302C", "A8364C", "C8369T", "A8372G", "T8374G", "G8387T", "T8414G", "A8426T", "A8429G", "A8432G", "A8435G", "A8446G", "T8450C", "T8451C", "T8456A", "C8477T", "T8483C", "T8495C", "G8516A", "A8540G", "C8543G", "T8546C", "A8573G", "T8585C", "G8588A", "C8607T", "T8646C", "A8652C", "A8663G", "C8666T", "T8687C", "C8699T", "C8727A", "C8728A", "A8739G", "C8747T", "T8786A", "G8796A", "C8810T", "C8812A", "A8829T", "T8847A", "A8858G", "T8867C", "G8868C", "G8875A", "A8876G", "T8914A", "A8918T", "A8924G", "G8933A", "T8939C", "T8947A", "A8954G", "C8966T", "A8967C", "-8974T", "T9002G"], "INT": ["S24N", "V31I", "T124A", "G134N", "I135V", "K136T", "T206S"], "RT-p51": ["T35V", "D121H", "I135T", "E177D", "E207Q", "L283I", "A286T", "V292I", "G333E", "E344D", "R356K", "T377I", "T400A"], "RT-p66": ["T35V", "D121H", "I135T", "E177D", "E207Q", "L283I", "A286T", "V292I", "G333E", "E344D", "R356K", "T377I", "T400A", "D460N", "R461K", "H483Q"], "gp120": ["T3D", "E4K", "N5G", "L6K", "I56V", "P57F", "E59-", "S82N", "T100K", "-106Y", "-107N", "-109G", "-111N", "-112N", "-114S", "-115T", "-116V", "-122E", "-123E", "-124G", "E136G", "R138S", "D139N", "K142R", "K143R", "Y145N", "K150N", "V153L", "P155S", "I166T", "Y189F", "P210A", "K224R", "D251N", "E265N", "N267T", "T269I", "I281M", "P285F", "A288T", "F289L", "D294E", "I305L", "K309Q", "Q335S", "K361Q", "-368N", "-369N", "-371T", "K393R", "I396V", "M398R", "N432H", "-433D", "-436N", "D446N", "R448M", "K462E"], "gp41": ["V7L", "V69I", "V72I", "S101D", "K106R", "E110D", "E119Q", "E121D", "N125S", "G129N", "N133T", "K154T", "V178I", "A189T", "I222T", "I235N", "R236L", "V238A", "A243T", "L244I", "D247V", "A267V", "I270T", "I301V", "L304F", "W314G", "I319V", "I321A", "G322L"], "nef": ["S8R", "I10M", "V11G", "P24E", "Q35R", "N51T", "A53P", "H89F", "Y102H", "K104Q", "E108D", "P129K", "I133V", "E152K", "S163C", "C169S", "E176P"], "p17": ["S9T", "T53S", "S54A", "I60L", "P66S", "V82I", "A83V", "Y86W", "I104L", "I107V", "D121A", "T122A", "G123A", "S126-", "V128-"], "p2": ["Q8H", "N9Q", "-10S", "A11N"], "p24": ["S41T", "D71E", "L83V", "I91N", "I135V", "R154K", "A177S"], "p6": ["G18E", "I21T", "P23S", "Q30P", "K31R", "E34G", "L50*"], "p7": ["K10R", "R11T", "E42D"], "pro": ["L19P", "K20I", "K70R"], "rev": ["S8D", "E11D", "K14R", "A15T", "H53Q", "E57Q", "S61D", "T62N", "T114I"], "tat": ["K19R", "A21P", "G42A", "Q54R", "T58S", "T64N", "P70S", "L74S", "S87Q"], "vif": ["R4K", "K34R", "K36A", "F39G", "E45D", "K67A", "K91R", "R93S", "S95R", "D101G", "L102M", "Y110H", "E134N", "Q178R"], "vpr": ["I63T", "F72Y", "Q77R", "I84T", "R87S", "A89T"], "vpu": ["Q2L", "E5Q", "A8S", "F27L", "R47A", "D60E", "E62S", "L74A", "D80N", "L82M"]}, "labels": {"aa": "INT: S24N, V31I, T124A, G134N, I135V, K136T, T206S; RT-p51: T35V, D121H, I135T, E177D, E207Q, L283I, A286T, V292I, G333E, E344D, R356K, T377I, T400A; RT-p66: T35V, D121H, I135T, E177D, E207Q, L283I, A286T, V292I, G333E, E344D, R356K, T377I, T400A, D460N, R461K, H483Q; gp120: T3D, E4K, N5G, L6K, I56V, P57F, E59-, S82N, T100K, -106Y, -107N, -109G, -111N, -112N, -114S, -115T, -116V, -122E, -123E, -124G, E136G, R138S, D139N, K142R, K143R, Y145N, K150N, V153L, P155S, I166T, Y189F, P210A, K224R, D251N, E265N, N267T, T269I, I281M, P285F, A288T, F289L, D294E, I305L, K309Q, Q335S, K361Q, -368N, -369N, -371T, K393R, I396V, M398R, N432H, -433D, -436N, D446N, R448M, K462E; gp41: V7L, V69I, V72I, S101D, K106R, E110D, E119Q, E121D, N125S, G129N, N133T, K154T, V178I, A189T, I222T, I235N, R236L, V238A, A243T, L244I, D247V, A267V, I270T, I301V, L304F, W314G, I319V, I321A, G322L; nef: S8R, I10M, V11G, P24E, Q35R, N51T, A53P, H89F, Y102H, K104Q, E108D, P129K, I133V, E152K, S163C, C169S, E176P; p17: S9T, T53S, S54A, I60L, P66S, V82I, A83V, Y86W, I104L, I107V, D121A, T122A, G123A, S126-, V128-; p2: Q8H, N9Q, -10S, A11N; p24: S41T, D71E, L83V, I91N, I135V, R154K, A177S; p6: G18E, I21T, P23S, Q30P, K31R, E34G, L50*; p7: K10R, R11T, E42D; pro: L19P, K20I, K70R; rev: S8D, E11D, K14R, A15T, H53Q, E57Q, S61D, T62N, T114I; tat: K19R, A21P, G42A, Q54R, T58S, T64N, P70S, L74S, S87Q; vif: R4K, K34R, K36A, F39G, E45D, K67A, K91R, R93S, S95R, D101G, L102M, Y110H, E134N, Q178R; vpr: I63T, F72Y, Q77R, I84T, R87S, A89T; vpu: Q2L, E5Q, A8S, F27L, R47A, D60E, E62S, L74A, D80N, L82M"}}, "children": [{"name": "MH141493", "node_attrs": {"div": 0.24509, "accession": "MH141493", "clade_membership": {"value": "other"}, "country": {"value": "FR"}, "date": {"value": 2014.0}, "Strain_name": {"value": "24FR0113_MW71FOBV"}, "LANL_subtype": {"value": "CRF94_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A133T", "-167T", "A301G", "A334G", "G378T", "T435A", "A571T", "G755A", "T763C", "A1415C", "A1492G", "G1552A", "G1640A", "T1873C", "C1903A", "T2011C", "T2093C", "A2215G", "A2341G", "T3045C", "A3224C", "A3247G", "T3399A", "A3538G", "G3569A", "A3787C", "A3816G", "T4234A", "T4435C", "A4495G", "G4514A", "A4570G", "A4591C", "C4786T", "A5055C", "A5150C", "T5162C", "A5373G", "A5433G", "T5466C", "T5470C", "A5567G", "A5640T", "A5711G", "G5866T", "C5884T", "C5916A", "T6161G", "T6190G", "T6193C", "A6269C", "G6425A", "A6733G", "G6774A", "G6803A", "G6809A", "A6837-", "A6848G", "T6849C", "T6860G", "C6888T", "-6955G", "-6957A", "-6961G", "-6963C", "-6969T", "-6970G", "-6979A", "-6983T", "-6985G", "-6986A", "A7095T", "A7123G", "G7160A", "A7237G", "A7322C", "A7531C", "A7632T", "A7641G", "T7642A", "C7801A", "G7862A", "C7938G", "G8036T", "C8106T", "G8114C", "G8216A", "G8237T", "T8256C", "G8258T", "G8354A", "G8407A", "A8413G", "T8636A", "G8846T", "A8870G"], "INT": ["K14R", "G247R"], "RT-p51": ["V317A", "I377L", "V435E"], "RT-p66": ["V317A", "I377L", "V435E", "E492K"], "gp120": ["K4N", "T21N", "C103G", "N112K", "-121M", "N139H", "N161T", "A191T", "R287K", "S306T", "R307K", "V317I", "E319K", "I332A", "S336A", "Q414I"], "gp41": ["D110V", "D113G", "N166K", "V187I", "T212S", "V245F", "A268V", "V271L", "A312S", "V318A", "V319L"], "nef": ["R22Q", "D98E", "M168I", "R191H", "T192N", "V194M"], "p17": ["A15S", "L34I", "Y79F"], "p24": ["V11A"], "p7": ["Q9R", "R29K"], "pro": ["D35E", "F99L"], "rev": ["I18V", "C63F", "C89S"], "tat": ["N64S", "P77A"], "vif": ["E2A", "A62D", "K63S", "A67V", "K157Q"], "vpr": ["N16H", "R90G"], "vpu": ["K35R"]}, "labels": {"aa": "INT: K14R, G247R; RT-p51: V317A, I377L, V435E; RT-p66: V317A, I377L, V435E, E492K; gp120: K4N, T21N, C103G, N112K, -121M, N139H, N161T, A191T, R287K, S306T, R307K, V317I, E319K, I332A, S336A, Q414I; gp41: D110V, D113G, N166K, V187I, T212S, V245F, A268V, V271L, A312S, V318A, V319L; nef: R22Q, D98E, M168I, R191H, T192N, V194M; p17: A15S, L34I, Y79F; p24: V11A; p7: Q9R, R29K; pro: D35E, F99L; rev: I18V, C63F, C89S; tat: N64S, P77A; vif: E2A, A62D, K63S, A67V, K157Q; vpr: N16H, R90G; vpu: K35R"}}}, {"name": "MH141491", "node_attrs": {"div": 0.24997, "accession": "MH141491", "clade_membership": {"value": "other"}, "country": {"value": "FR"}, "date": {"value": 2016.0}, "Strain_name": {"value": "05FR0916_MW95FOBV"}, "LANL_subtype": {"value": "CRF94_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T155A", "T156A", "-167A", "T200C", "T201G", "A541G", "A617C", "A692G", "A839G", "A1242G", "C1243T", "G1268A", "C1280T", "C1292A", "A1349G", "G1354C", "G1404A", "T1452C", "G1553A", "A1642G", "G1664A", "A1703G", "T1724G", "C1825A", "T1826A", "A1907G", "A1927G", "C2149G", "T2299C", "C2452T", "A2551G", "C2684A", "T2996C", "G3307A", "A3421G", "G3808T", "G3925A", "A4036G", "A4644G", "G4702A", "G4708A", "G4727A", "C4728A", "G4779A", "C4965T", "T5062C", "C5086A", "G5140A", "T5310G", "T5314A", "G5349T", "G5432T", "A5434T", "A5447G", "A5535T", "T5614C", "T5627C", "C5651T", "A5911G", "G6175T", "C6198A", "A6222C", "A6283G", "A6333G", "C6336A", "G6345C", "C6496T", "A6553G", "A6661G", "A6714G", "T6763C", "A6770T", "A6776G", "A6798G", "G6799T", "G6821A", "T6829C", "G6832T", "A6833G", "A6834G", "T6835G", "-6836A", "-6838T", "G6889A", "G6954A", "-6955T", "A6956G", "-6957T", "G6959A", "-6961T", "-6963G", "A6966C", "-6969A", "-6970T", "A6974G", "C6975T", "C6976T", "G6977A", "C6978A", "-6979T", "A6981G", "-6983A", "T6984C", "-6985T", "-6986T", "-6994T", "-6995A", "-6996A", "-6997T", "-6998T", "-6999T", "-7000G", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "C7006T", "A7009C", "A7094C", "G7101A", "C7156T", "A7268G", "G7291A", "G7426A", "G7614A", "A7621G", "G7628A", "A7706C", "G7754A", "C7755A", "G7790A", "A7791G", "T7796A", "C7874T", "G7987A", "T8010C", "A8032G", "G8102A", "C8168T", "G8170A", "T8210C", "T8371C", "G8414A", "A8469G", "G8487C", "C8514G", "A8584T", "A8701T", "A8728G", "C8809A", "G8864T", "C8904A", "C8906T", "A8914G", "A8917C", "A8922G", "C8948T"], "INT": ["E11D", "M50I"], "RT-p51": ["Q197K"], "RT-p66": ["Q197K"], "gp120": ["T115N", "E123A", "N160S", "N161D", "R164T", "I269M", "T308A", "K315S", "E323K", "N327G", "-328N", "M345T", "W367Y", "-372Y", "-378N", "-379V", "-380T", "-381N", "-382L", "-383N", "-384D", "R416K", "N436D", "K472E"], "gp41": ["L7M", "S104N", "D109N", "I135L", "A151K", "D163S", "S165T", "L191F", "L236P", "V267I", "N305D"], "nef": ["M10T", "I43V", "A49P", "L58V", "Y81F", "Y120F", "K129R", "A156D", "E174D", "R188S"], "p1": ["K4R"], "p17": ["K69R"], "p2": ["S10P"], "p24": ["T171V", "D187E", "G208A", "G225S"], "p6": ["F15L", "P49Q"], "pro": ["L10I"], "rev": ["D7V", "K30N", "E47K", "N62D", "C85Y", "P107L", "A108T"], "tat": ["R19I", "T20S", "N24S", "L32F", "R53S"], "vif": ["T20A", "G39E", "R41K", "H48N", "V65I", "H127Y", "I159T", "T167K", "G185E"], "vpr": ["F69C", "G82C"], "vpu": ["S3P", "V7A", "A15V"]}, "labels": {"aa": "INT: E11D, M50I; RT-p51: Q197K; RT-p66: Q197K; gp120: T115N, E123A, N160S, N161D, R164T, I269M, T308A, K315S, E323K, N327G, -328N, M345T, W367Y, -372Y, -378N, -379V, -380T, -381N, -382L, -383N, -384D, R416K, N436D, K472E; gp41: L7M, S104N, D109N, I135L, A151K, D163S, S165T, L191F, L236P, V267I, N305D; nef: M10T, I43V, A49P, L58V, Y81F, Y120F, K129R, A156D, E174D, R188S; p1: K4R; p17: K69R; p2: S10P; p24: T171V, D187E, G208A, G225S; p6: F15L, P49Q; pro: L10I; rev: D7V, K30N, E47K, N62D, C85Y, P107L, A108T; tat: R19I, T20S, N24S, L32F, R53S; vif: T20A, G39E, R41K, H48N, V65I, H127Y, I159T, T167K, G185E; vpr: F69C, G82C; vpu: S3P, V7A, A15V"}}}]}, {"name": "other_NODE_0000039", "node_attrs": {"div": 0.21559, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C426A", "T434C", "G480A", "A516C", "A606C", "A665G", "A680C", "G683A", "G693A", "A697G", "-714A", "C722T", "T734C", "G762A", "T763C", "T767C", "A860G", "A899G", "A938G", "A965C", "C974T", "T988C", "T992G", "A1002T", "C1013G", "T1094C", "A1115C", "G1139A", "A1151G", "C1175T", "G1184A", "T1214C", "A1247T", "A1277G", "C1292A", "T1296C", "G1313A", "C1478T", "A1595C", "A1642G", "G1673A", "A1701T", "G1718A", "G1720A", "T1754-", "C1756T", "C1768A", "A1777G", "T1783A", "T1785-", "T1792C", "C1795T", "G1846A", "A1963G", "A2038C", "T2101A", "A2127C", "G2173A", "A2203C", "C2211A", "A2212G", "A2215G", "A2341G", "T2383C", "G2459C", "A2572T", "A2626G", "A2677G", "T2723C", "A2727G", "T2776C", "A2815T", "C2831T", "T2873C", "A2887G", "C2909G", "G2972A", "T2996C", "A3019G", "A3071G", "A3164C", "A3196G", "A3226T", "G3264A", "A3385G", "A3490G", "A3651G", "A3670G", "A3739T", "A3755G", "C3799A", "A3814G", "T3856C", "A3868G", "G3907A", "C3908T", "G3916A", "T3962C", "G3997A", "C4006T", "C4021A", "A4078C", "C4079T", "G4109A", "G4145A", "A4150G", "A4159T", "T4177G", "G4244C", "A4253C", "C4428T", "G4459A", "A4522G", "A4531G", "G4539A", "T4540C", "G4673A", "G4677A", "A4694G", "G4708A", "C4728A", "A4735G", "G4737A", "C4761T", "T4832C", "T4840C", "G4859A", "A4860G", "A4862G", "G4887A", "G4949A", "A4952T", "G4982T", "A5024G", "T5027C", "A5037G", "T5047G", "A5122G", "G5131A", "T5162C", "A5167G", "T5203C", "C5213G", "C5214T", "A5215G", "G5225A", "T5239C", "G5257A", "A5324G", "A5362G", "A5366G", "T5424C", "C5469T", "T5470C", "A5548G", "G5561A", "C5569G", "A5576T", "T5616C", "C5654G", "A5711G", "T5788C", "T5789A", "A5790G", "C5792A", "G5800A", "C5831T", "T5843C", "C5869T", "G5872A", "G5954A", "A5955G", "C5958A", "A5959G", "A6001G", "-6023C", "A6024C", "T6056G", "T6163C", "A6167G", "G6195C", "C6198G", "-6200A", "A6221-", "A6223-", "G6224-", "A6232G", "T6250C", "A6262C", "A6263C", "A6265G", "G6274A", "G6280A", "T6295C", "C6318A", "A6332-", "A6333-", "T6334-", "A6335-", "C6336-", "T6337-", "G6392A", "T6457C", "G6463A", "A6489C", "C6499T", "C6559T", "A6594T", "A6595C", "T6641C", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "-6693G", "-6697T", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "-6703A", "A6714G", "C6721T", "T6793A", "G6803A", "C6807T", "G6809A", "A6811C", "A6848G", "A6884G", "C6885T", "C6888T", "T6949-", "C7008-", "A7094C", "T7150-", "A7155-", "A7161-", "A7297G", "C7429T", "T7433C", "A7504G", "A7522G", "A7549G", "C7658G", "C7678T", "C7690T", "C7702T", "T7708A", "T7748C", "G7862A", "G7873A", "G7915A", "T7929G", "G8001C", "G8036A", "C8051A", "G8070T", "G8079A", "C8156T", "T8157G", "G8181T", "A8196G", "G8208A", "T8210C", "C8213A", "T8215A", "C8223T", "A8241G", "G8264A", "T8268C", "G8276T", "T8290G", "A8305G", "A8311C", "T8321G", "T8322C", "G8328A", "A8342C", "T8348G", "G8354A", "T8375G", "G8385C", "C8386A", "A8390T", "G8402A", "A8409-", "A8413-", "C8425A", "G8436C", "A8459G", "C8460T", "A8469G", "C8480T", "C8499G", "T8507C", "A8519G", "A8522G", "A8555G", "T8558G", "A8570G", "A8576G", "T8582A", "T8597C", "T8608A", "C8640T", "C8720-", "C8723-", "A8726-", "C8741T", "G8753A", "C8756A", "A8762G", "T8770A", "T8786C", "T8789C", "A8794C", "G8798A", "T8813A", "A8816G", "G8846A", "G8852A", "T8855C", "G8864T", "C8869A", "A8870G", "G8873A", "C8903T", "A8909G", "A8912T", "T8915A", "T8923G", "-8974G", "A8977G", "C8978A", "A8979C", "T8993-", "C9018T", "G9026A", "C9028T", "C9068T", "G9136A"], "INT": ["V112I", "E157Q", "K160Q", "T218I", "S255N"], "RT-p51": ["K11T", "E36D", "T39K", "E122Q", "K211R", "P272A", "V293I", "I326V", "M357L", "R390K"], "RT-p66": ["K11T", "E36D", "T39K", "E122Q", "K211R", "P272A", "V293I", "I326V", "M357L", "R390K", "N519S", "S554A"], "gp120": ["D34S", "T35K", "W68G", "N105D", "-107K", "N108K", "I126M", "E136D", "I137L", "P155Q", "N160-", "N161-", "V180I", "K212T", "E247V", "S263P", "V317I", "A318V", "E319I", "I332V", "T344V", "S370-", "T385-", "S412A", "N434-"], "gp41": ["S101T", "V187I", "L209R", "R233T", "V245I", "S256I", "R259H", "L285W", "S293I", "N298S", "S302N", "L304I", "T307I", "E313G", "A325F", "L340A", "R342K"], "nef": ["A15Q", "M20I", "A28R", "A32P", "E38D", "H40Y", "I43V", "N126-", "Y127-", "T128-", "P129-", "G130-", "Y135F", "F143Y", "D151A", "N157T", "M168I", "E174D", "R191L", "V194R", "Y202F"], "p1": ["K4R"], "p17": ["L31I", "G49S", "M61L", "D93E", "A120T", "D121G", "-127K"], "p24": ["V11T", "V86A", "H87Q", "I91F", "E128D", "E180D", "D187E"], "p6": ["T8S", "S14N", "P25S", "K33R", "L35Q", "Y36H", "L38P"], "p7": ["Q9P"], "rev": ["V16I", "I18L", "I21F", "K30N", "Q51H", "C63Y", "A68E", "Q74H", "S103L", "E111D"], "tat": ["T58A", "S62N", "H65D", "D67V", "L74A", "S87*"], "vif": ["M29I", "V31I", "F39V", "R41K", "H48N", "K50R", "V51I", "V85A", "K92E", "D101N", "K122N", "R132S", "Q136R", "T151A", "I154R", "K179R", "G182D", "N190S"], "vpr": ["P37V", "G41S", "Q86R"], "vpu": ["E5A", "A16G", "K35R", "L61Q", "V65M", "A75V", "V79A"]}, "labels": {"aa": "INT: V112I, E157Q, K160Q, T218I, S255N; RT-p51: K11T, E36D, T39K, E122Q, K211R, P272A, V293I, I326V, M357L, R390K; RT-p66: K11T, E36D, T39K, E122Q, K211R, P272A, V293I, I326V, M357L, R390K, N519S, S554A; gp120: D34S, T35K, W68G, N105D, -107K, N108K, I126M, E136D, I137L, P155Q, N160-, N161-, V180I, K212T, E247V, S263P, V317I, A318V, E319I, I332V, T344V, S370-, T385-, S412A, N434-; gp41: S101T, V187I, L209R, R233T, V245I, S256I, R259H, L285W, S293I, N298S, S302N, L304I, T307I, E313G, A325F, L340A, R342K; nef: A15Q, M20I, A28R, A32P, E38D, H40Y, I43V, N126-, Y127-, T128-, P129-, G130-, Y135F, F143Y, D151A, N157T, M168I, E174D, R191L, V194R, Y202F; p1: K4R; p17: L31I, G49S, M61L, D93E, A120T, D121G, -127K; p24: V11T, V86A, H87Q, I91F, E128D, E180D, D187E; p6: T8S, S14N, P25S, K33R, L35Q, Y36H, L38P; p7: Q9P; rev: V16I, I18L, I21F, K30N, Q51H, C63Y, A68E, Q74H, S103L, E111D; tat: T58A, S62N, H65D, D67V, L74A, S87*; vif: M29I, V31I, F39V, R41K, H48N, K50R, V51I, V85A, K92E, D101N, K122N, R132S, Q136R, T151A, I154R, K179R, G182D, N190S; vpr: P37V, G41S, Q86R; vpu: E5A, A16G, K35R, L61Q, V65M, A75V, V79A"}}, "children": [{"name": "MF109476", "node_attrs": {"div": 0.23448, "accession": "MF109476", "clade_membership": {"value": "other"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "13774_1_51.3"}, "LANL_subtype": {"value": "CRF03_A6B"}}, "branch_attrs": {"mutations": {"nuc": ["A541G", "T549A", "A604G", "G607A", "A611G", "A613G", "A654T", "A661G", "C707T", "C890T", "C897T", "A1025C", "G1404A", "G1419A", "G1452A", "A1461G", "T1483A", "G1488A", "G1543A", "A1719C", "A1742G", "-1746C", "-1747C", "-1748T", "T1752-", "C1753-", "C1755-", "A1783G", "G1784T", "A1786-", "A1918G", "G1942A", "A2126G", "A2211G", "C2296T", "A2460C", "G2626T", "T2737A", "G2925A", "C2953A", "T3165A", "G3173A", "A3193G", "C3222T", "A3251G", "A3258G", "A3268C", "T3399C", "T3492C", "T3541C", "A3574G", "G3664A", "C3688T", "G3694A", "A3816G", "C3995T", "A4111G", "C4129T", "A4130G", "C4146A", "T4153C", "T4165C", "A4285G", "A4625G", "T4703A", "T4769-", "G4770-", "T4805C", "A4900G", "A5042C", "G5087A", "A5336C", "C5342T", "C5351T", "A5355C", "T5492C", "T5597-", "A5598-", "G5599-", "T5600-", "A5601-", "C5602-", "C5611-", "A5613-", "A5622C", "A5781T", "C5824-", "T5850G", "C5862-", "A5863-", "A5867G", "T5871C", "T5951C", "A5958G", "C6007A", "C6024T", "T6085G", "G6121A", "T6171-", "G6175T", "G6179A", "A6180G", "A6182G", "T6184G", "A6192C", "T6196G", "T6199G", "G6227-", "T6264G", "C6293T", "T6298C", "A6304C", "G6323-", "A6324-", "T6325-", "A6326-", "A6327-", "T6328-", "G6329-", "A6330-", "T6331-", "A6338-", "G6339-", "C6340-", "A6430G", "G6458A", "A6465C", "A6535G", "C6548T", "G6578A", "T6599A", "G6647C", "A6668G", "A6669G", "G6705C", "G6725A", "G6732A", "A6737G", "A6742G", "G6743A", "C6758T", "T6763C", "A6797C", "A6798G", "A6809C", "-6836A", "-6838T", "G6871A", "A6947-", "G6948-", "A6950-", "C6951-", "T6952-", "T6953-", "G6954-", "C6991-", "A7007-", "C7014T", "C7087T", "A7096C", "C7107A", "A7108C", "A7113C", "A7123G", "A7148-", "A7149-", "A7152-", "A7154-", "C7156-", "A7157-", "A7158-", "T7159-", "G7160-", "A7163-", "G7276A", "A7373C", "A7375G", "T7411G", "T7444C", "C7463T", "G7631T", "A7632G", "T7642G", "A7676G", "A7693G", "A7700C", "A7706C", "G7735A", "A7759C", "G7773A", "A7818G", "G7831A", "G7841A", "A8006G", "A8014G", "A8069C", "A8076G", "A8079T", "G8216A", "T8279G", "G8290A", "A8372G", "G8398A", "C8410-", "T8411-", "G8412-", "T8414-", "C8415-", "A8417T", "A8435G", "C8514T", "A8653G", "C8676T", "-8720T", "-8723T", "-8726C", "T8759C", "C8790A", "G8814A", "T8887G", "G8888A", "G8905A", "A8915G", "C8951G"], "INT": ["K14R", "I112M", "S119G", "T124N", "R284G"], "RT-p51": ["T11A", "K39R", "Q122P", "E177D", "F214L", "R277K", "L357Q", "A360T", "A376V", "T386A", "K388R", "V435A"], "RT-p66": ["T11A", "K39R", "Q122P", "E177D", "F214L", "R277K", "L357Q", "A360T", "A376V", "T386A", "K388R", "V435A", "V466A"], "gp120": ["T3-", "N5D", "L6S", "Y33H", "K35R", "P57L", "H77Q", "-106N", "K108M", "T110-", "N113-", "E125-", "M126-", "L137R", "L147F", "K150N", "D157-", "N158-", "D159-", "S162-", "D202N", "K204T", "V242I", "F249I", "E265Q", "N272G", "-282A", "G284-", "A291T", "G293E", "D294G", "D297N", "H302Y", "K315R", "I319H", "-328N", "S365-", "T366-", "W367-", "T387I", "Q414H", "S418N", "N420T", "N432-", "N435-", "T437-"], "gp41": ["I24L", "E110W", "D113E", "N125D", "N133H", "I135L", "L152F", "S157N", "K172R", "M176I", "G180S", "I235V", "I256L", "H258R", "H259L", "G322A"], "nef": ["I10M", "R19K", "A23-", "P24-", "P25-"], "p1": ["S9N"], "p17": ["K69R", "S72T", "Q90R", "R91Q", "I92M", "E93G", "I107L", "N109S"], "p2": ["-10T", "A11N", "-12V", "I13-"], "p24": ["E98D", "G225S", "V230I"], "p6": ["N14H", "I21M", "S25-", "H36-", "P38S", "T39I"], "p7": ["F6Y", "G8S", "R26K"], "rev": ["H53R", "S56G", "H74P"], "tat": ["D61G"], "vif": ["A62-"], "vpr": ["Q77H", "I84L"], "vpu": ["S3L", "L4D", "A5-", "F27L", "E58D", "H73-"]}, "labels": {"aa": "INT: K14R, I112M, S119G, T124N, R284G; RT-p51: T11A, K39R, Q122P, E177D, F214L, R277K, L357Q, A360T, A376V, T386A, K388R, V435A; RT-p66: T11A, K39R, Q122P, E177D, F214L, R277K, L357Q, A360T, A376V, T386A, K388R, V435A, V466A; gp120: T3-, N5D, L6S, Y33H, K35R, P57L, H77Q, -106N, K108M, T110-, N113-, E125-, M126-, L137R, L147F, K150N, D157-, N158-, D159-, S162-, D202N, K204T, V242I, F249I, E265Q, N272G, -282A, G284-, A291T, G293E, D294G, D297N, H302Y, K315R, I319H, -328N, S365-, T366-, W367-, T387I, Q414H, S418N, N420T, N432-, N435-, T437-; gp41: I24L, E110W, D113E, N125D, N133H, I135L, L152F, S157N, K172R, M176I, G180S, I235V, I256L, H258R, H259L, G322A; nef: I10M, R19K, A23-, P24-, P25-; p1: S9N; p17: K69R, S72T, Q90R, R91Q, I92M, E93G, I107L, N109S; p2: -10T, A11N, -12V, I13-; p24: E98D, G225S, V230I; p6: N14H, I21M, S25-, H36-, P38S, T39I; p7: F6Y, G8S, R26K; rev: H53R, S56G, H74P; tat: D61G; vif: A62-; vpr: Q77H, I84L; vpu: S3L, L4D, A5-, F27L, E58D, H73-"}}}, {"name": "AF193276", "node_attrs": {"div": 0.22783, "accession": "AF193276", "clade_membership": {"value": "other"}, "country": {"value": "RU"}, "date": {"value": 1997.0}, "Strain_name": {"value": "KAL153_2"}, "LANL_subtype": {"value": "CRF03_A6B"}}, "branch_attrs": {"mutations": {"nuc": ["A414G", "A470G", "G534A", "A866G", "C965T", "T1040C", "C1051G", "C1054G", "C1350T", "C1381T", "T1427C", "G1474A", "G1476A", 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T39V; rev: V109I; vif: K63R, K67R, H73Q, Q83H, K91L, I154V; vpr: I70V; vpu: Q2T, S3P, I33L"}}, "children": [{"name": "MF373153", "node_attrs": {"div": 0.2611, "accession": "MF373153", "clade_membership": {"value": "other"}, "country": {"value": "SE"}, "date": {"value": 2010.0}, "Strain_name": {"value": "042SE"}, "LANL_subtype": {"value": "CRF84_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G367A", "A374G", "G375A", "A376G", "C379A", "A380G", "A417C", "A419G", "G480A", "G495C", "A509G", "G524A", "C539T", "A541G", "T549A", "A562C", "A571T", "C588A", "T593C", "T596C", "A605G", "G607T", "G612A", "G614A", "A620G", "T635C", "A665G", "A678G", "A682G", "G683A", "G690-", "C691-", "A692-", "C698T", "A704G", "C731T", "C748T", "G762A", "A764G", "G771C", "T782A", "T808C", "A820G", "C823G", "T824C", "T992G", "T1004C", "C1005G", "G1016A", "T1040C", "C1062A", "C1091T", "C1115T", "C1136T", "C1175T", "G1192A", "G1199A", "T1214C", "A1230C", "A1242G", "T1253C", "G1256A", "C1280T", "G1313A", "A1329T", 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"C5478T", "T5484G", "T5490C", "C5491A", "A5495C", "C5496G", "A5548C", "A5560G", "A5563C", "A5567C", "A5594G", "T5602C", "-5612C", "T5617C", "A5621T", "A5644G", "G5647A", "G5653C", "C5654T", "C5679T", "T5686A", "T5688C", "A5694G", "A5696G", "G5699T", "G5700T", "A5702G", "A5712G", "A5717G", "A5728T", "C5763T", "G5775A", "G5784A", "T5787A", "G5791T", "A5805G", "-5824C", "C5827G", "T5828A", "T5850C", "C5851A", "T5860C", "A5867G", "C5878T", "C5884T", "C5917T", "G5948T", "G5954A", "T5956A", "T5964C", "G5972A", "C5998A", "T6026C", "G6028A", "G6037C", "T6046C", "A6073G", "G6079A", "T6100C", "C6115T", "G6121A", "G6133A", "T6155C", "T6163-", "T6166-", "A6168-", "A6174-", "A6176-", "A6180T", "A6188G", "C6189T", "A6192C", "C6198A", "-6200A", "-6201T", "-6202C", "-6215A", "-6218G", "-6222T", "G6227-", "A6228-", "A6229G", "A6232G", "A6234C", "T6242A", "A6251G", "A6259T", "A6263T", "G6267A", "G6280A", "A6281C", "A6304G", "T6306C", "A6313G", "C6317A", "C6318A", "A6326G", "A6327G", "A6378G", "T6382G", "G6392A", "T6395A", "T6436A", "G6451A", "G6463T", "A6464G", "A6475G", "A6478G", "G6481C", "A6520G", "A6525G", "A6535G", "C6545T", "C6548T", "A6553G", "C6559A", "G6575A", "T6586C", "T6599A", "G6605A", "C6618A", "G6626A", "G6631A", "A6635G", "T6637C", "G6638A", "C6673T", "A6686G", "-6689G", "-6693C", "T6719C", "A6757T", "G6774A", "A6776T", "A6798G", "A6800G", "T6808C", "G6809A", "A6811C", "G6821A", "A6822C", "C6824T", "-6836A", "-6838C", "A6840C", "A6858G", "A6859C", "T6883A", "T6898C", "A6931G", "A6936G", "C6951G", "T6952G", "-6955G", "-6956G", "-6957A", "-6958C", "-6963C", "-6971A", "-6972G", "-6973G", "-6974T", "-6975A", "-6976A", "-6977G", "-6978C", "-6979A", "-6980A", "-6981T", "-6982G", "-6983C", "-6984C", "-6985A", "-6986G", "-6987C", "-6988G", "-6989C", "-6990A", "-6998G", "-7003C", "C7020A", "C7064A", "A7069C", "A7095T", "A7106G", "A7108G", "C7127A", "T7147G", "T7150G", "A7154G", "A7158G", "-7162A", "A7163C", "-7164C", "-7165T", "C7170T", "C7174T", "G7198A", "A7219G", "T7222C", "T7228C", "A7239G", "C7250T", "A7275G", "G7291A", "G7307A", "G7309A", "A7313C", "A7315G", "T7357A", "C7368T", "A7375G", "T7400C", "A7420G", "G7426A", "C7429T", "A7477G", "A7525C", "C7561G", "A7572G", "T7575A", "C7576T", "C7579T", "A7583G", "T7588C", "T7603C", "T7609C", "G7631A", "A7633G", "G7640C", "T7642G", "C7658G", "A7676G", "A7677C", "C7678T", "A7690G", "G7720A", "G7729A", "T7748C", "C7755A", "C7770A", "A7771C", "C7775T", "A7782G", "G7790A", "A7791G", "T7796A", "C7801A", "A7819G", "T7825C", "A7846G", "T7853C", "C7906T", "T7913C", "T7930C", "A7931C", "A7937G", "C7939A", "C7969A", "C7988A", "C8005A", "T8007C", "G8010C", "A8014G", "A8029G", "C8031T", "G8036A", "C8037T", "C8047T", "G8050C", "C8051A", "G8055A", "G8079A", "C8092A", "G8098A", "G8110A", "G8144A", "A8152G", "T8155C", "T8159A", "G8160A", "G8170A", "C8171G", "A8172C", "A8180G", "G8181T", "A8184G", "G8194A", "A8196T", "A8207G", "G8208A", "C8213T", "A8241G", "A8262G", "G8274A", "A8275C", "A8276C", "G8285-", "C8286-", "T8287-", "T8288-", "T8289-", "T8290-", "C8291-", "T8292-", "C8293-", "A8294-", "A8295-", "C8296-", "A8297-", "T8298-", "A8299-", "C8300-", "C8301-", "T8302-", "A8303-", "G8304-", "A8305-", "A8306-", "G8307-", "A8308-", "A8309-", "T8310-", "A8311-", "A8312-", "G8313-", "A8314-", "C8315-", "G8318A", "T8348G", "G8354A", "A8360T", "A8378C", "T8390C", "G8394A", "A8395G", "G8402A", "A8403G", "G8404A", "A8405G", "G8424A", "C8485T", "A8486G", "G8487-", "C8488-", "A8489-", "G8490-", "C8491-", "T8492-", "C8494A", "A8496C", "T8498C", "T8505C", "T8507C", "C8509T", "A8519C", "A8522G", "G8554A", "A8555G", "T8568C", "A8573G", "T8585C", "T8595C", "T8636A", "A8653G", "A8657G", "C8666A", "C8684G", "T8687C", "C8688A", "C8690T", "C8741T", "G8753A", "C8756A", "A8762G", "G8805A", "C8810T", "A8816G", "A8823G", "G8834C", "A8859G", "G8864T", "C8869A", "A8870G", "G8880A", "T8881C", "G8882A", "C8904T", "G8905A", "A8912C", "C8913T", "G8917A", "A8922C", "T8923A", "A8954G", "G8955A", "A8963C", "A8977G", "C8978A", "A8979C", 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"L425I", "N432K", "-433N", "N434D", "N435S", "T437P", "T439I", "K462R", "K474R"], "gp41": ["V2I", "I4L", "A22V", "I24M", "R74S", "K90R", "L91H", "T94A", "E110K", "D113Q", "S125A", "A151E", "A156D", "N160S", "D163S", "S165T", "N166K", "I210L", "T212A", "Q229K", "I235T", "R236P", "A243V", "A245I", "S251N", "R259H", "F263L", "R277L", "G281S", "W286K", "Q290A", "S293V", "Q294R", "N298I", "S302D", "L304F", "E313G", "E320G", "R324N", "I325L", "G326C", "A328-", "F329-", "L330-", "N331-", "I332-", "P333-", "R334-", "R335-", "I336-", "R337-", "Q338-"], "nef": ["E18R", "M20I", "R21E", "E38D", "T48M", "A49N", "A50H", "T51P", "N52S", "A53R", "D54V", "C55-", "A56-", "E59D", "R71K", "F85L", "D98E", "K104R", "H116N", "E155K", "N157T", "N161D", "M173V", "V180T", "R188Y", "L191F", "R192K", "R194Q", "Y202F"], "p1": ["K4R"], "p17": ["G11E", "D14S", "A15E", "K28Q", "G49S", "A54P", "K69R", "S72T", "K76T", "Y79F", "L85I", "R91M", "D93K", "T115A", "Q116R", "A120-"], "p2": ["Q8T", "A11-"], "p24": ["A6V", "V11M", "A14P", "V26A", "K30R", "A31G", "H87Q", "P92A", "L111I", "R154K", "T171A", "E180D", "T200S", "R203K", "P207T"], "p6": ["E6K", "S14L", "S24P", "P25T", "E29G", "K33E", "-36A"], "pro": ["K14R", "K45R", "R57K", "L63P"], "rev": ["E11D", "I18L", "Y28P", "K30S", "P31T", "A47E", "H53N", "S56G", "S61G", "C63Y", "P67S", "A68Q", "D84N", "D88N", "D99K", "I102V", "S103P", "V104E", "A108S", "E111G", "E116N"], "tat": ["E2D", "K19R", "A21S", "Y32F", "L39I", "K40T", "T58P", "S61G", "S62G", "K63Q", "D64A", "L74S", "P77H", "S87*"], "vif": ["T20S", "H27Y", "K36R", "Y44F", "R77K", "H80Q", "D101G", "L109I", "Y110S", "S116A", "K122Q", "S130T", "R132S", "N140S", "T155R", "P156S", "K158R", "K179R", "R181K", "M189T"], "vpr": ["N28R", "I63M", "I84T", "A93S"], "vpu": ["T2P", "E5V", "V7L", "I13V", "V14I", "A16L", "F27I", "Y30C", "R31I", "K32R", "K37R", "R41W", "D60E", "E62S", "E63A", "-74D", "-75A", "L82M"]}, "labels": {"aa": "INT: R20K, V31I, V32I, M50T, I60M, I72V, I101L, V112T, I113V, V126F, I135V, K136Q, I234L; RT-p51: D123N, I142V, K166R, I178M, D250E, V254I, I329L, P345Q, F346Y, M357L, S359G, A360T, T377Q, S379C, V435A; RT-p66: D123N, I142V, K166R, I178M, D250E, V254I, I329L, P345Q, F346Y, M357L, S359G, A360T, T377Q, S379C, V435A, E449K, V466I, H483N, E514D; gp120: N5D, A32S, D34K, V37A, V40I, P57K, N105-, N108-, E125-, I126-, K127-, S130T, I137L, R138K, K143Q, I151T, P155K, N158G, T172A, Q175R, V180I, S181T, K203N, K224R, E241K, L249I, D251N, T255N, V258I, N261D, E262K, S263P, S278G, I279V, H280P, F289L, D294A, R307K, T308S, K309E, N312K, K315R, K316E, E319N, E323T, H324Y, -328N, K329T, Q335S, T366R, -368D, S370T, P389Q, E401G, S412P, N414I, K418E, L425I, N432K, -433N, N434D, N435S, T437P, T439I, K462R, K474R; gp41: V2I, I4L, A22V, I24M, R74S, K90R, L91H, T94A, E110K, D113Q, S125A, A151E, A156D, N160S, D163S, S165T, N166K, I210L, T212A, Q229K, I235T, R236P, A243V, A245I, S251N, R259H, F263L, R277L, G281S, W286K, Q290A, S293V, Q294R, N298I, S302D, L304F, E313G, E320G, R324N, I325L, G326C, A328-, F329-, L330-, N331-, I332-, P333-, R334-, R335-, I336-, R337-, Q338-; nef: E18R, M20I, R21E, E38D, T48M, A49N, A50H, T51P, N52S, A53R, D54V, C55-, A56-, E59D, R71K, F85L, D98E, K104R, H116N, E155K, N157T, N161D, M173V, V180T, R188Y, L191F, R192K, R194Q, Y202F; p1: K4R; p17: G11E, D14S, A15E, K28Q, G49S, A54P, K69R, S72T, K76T, Y79F, L85I, R91M, D93K, T115A, Q116R, A120-; p2: Q8T, A11-; p24: A6V, V11M, A14P, V26A, K30R, A31G, H87Q, P92A, L111I, R154K, T171A, E180D, T200S, R203K, P207T; p6: E6K, S14L, S24P, P25T, E29G, K33E, -36A; pro: K14R, K45R, R57K, L63P; rev: E11D, I18L, Y28P, K30S, P31T, A47E, H53N, S56G, S61G, C63Y, P67S, A68Q, D84N, D88N, D99K, I102V, S103P, V104E, A108S, E111G, E116N; tat: E2D, K19R, A21S, Y32F, L39I, K40T, T58P, S61G, S62G, K63Q, D64A, L74S, P77H, S87*; vif: T20S, H27Y, K36R, Y44F, R77K, H80Q, D101G, L109I, Y110S, S116A, K122Q, S130T, R132S, N140S, T155R, P156S, K158R, K179R, R181K, M189T; vpr: N28R, I63M, I84T, A93S; vpu: T2P, E5V, V7L, I13V, V14I, A16L, F27I, Y30C, R31I, K32R, K37R, R41W, D60E, E62S, E63A, -74D, -75A, L82M"}}}, {"name": "other_NODE_0000042", "node_attrs": {"div": 0.21202, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T23-", "T163A", "A301T", "A656G", "T662C", "C722T", "A803G", "A1022G", "T1322C", "G1498A", "A1586G", "C1724G", "A1777G", "G1781C", "A1786-", "C1826A", "C2353T", "G2422A", "C2464T", "A2578G", "A2613C", "C2615A", "T2653C", "C2671T", "A2707G", "A2715C", "A2716T", "G2728A", "T2788A", "T2806C", "A2818C", "G2872A", "T2885C", "T2930C", "A2932G", "T2944C", "A2968T", "C2975A", "A2986G", "A3010G", "A3019G", "A3034T", "A3037G", "G3046A", "G3142A", "G3154A", "T3165A", "G3170T", "G3171C", "C3175T", "G3205A", "A3220G", "C3303T", "A3304G", "C3319T", "T3359C", "A3391C", "A3448G", "T3449C", "A3463G", "A3490G", "C3496T", "C3508G", "G3520A", "A3535T", "T3541C", "C3542T", "T3550C", "C3577T", "A3616G", "T3628C", "C3665A", "A3674G", "G3685A", "A3772G", "T3904C", "A4228G", "A4782G", "G4878A", "T4925C", "A4937C", "T4943C", "T4967A", "A5036G", "C5091T", "T5170G", "A5186C", "T5221C", "A5362G", "C5371T", "A5418G", "T5454C", "G5463A", "G5534A", "G5538C", "A5556C", "G5557A", "G5575A", "C5611-", "A5613-", "A5655T", "T5684C", "A5706G", "T5788A", "T5789C", "C5834T", "G5845A", "G5848A", "A5911T", "A5915G", "C5917A", "T5923C", "A6025T", "A6044G", "G6088A", "T6101C", "A6142T", "A6158G", "T6163C", "-6173A", "T6178C", "T6193C", "T6196-", "-6209C", "-6210T", "-6213T", "-6214A", "-6222A", "-6226A", "G6277A", "A6285T", "G6290T", "A6303G", "A6322T", "A6333C", "G6339A", "A6490G", "G6577A", "A6733T", "C6875T", "T6925C", "T6949C", "-6956A", "-6957T", "-6963G", "-6968T", "-6986A", "-6987A", "-6988C", "-6989A", "-6990G", "-6992A", "-6995G", "-6998A", "-7003T", "G7055A", "C7089A", "G7101A", "A7158C", "A7225G", "C7289G", "G7309T", "G7324C", "G7339A", "A7428G", "G7453T", "C7469A", "A7590C", "T7626A", "G7660A", "A7666T", "A7677G", "G7689A", "T7691A", "C7702T", "T7703C", "A7747C", "A7765G", "G7807A", "C7938G", "A8019G", "C8065T", "C8093A", "T8279G", "A8311C", "G8388A", "C8480T", "A8652C", "G8852A", "T8915A"], "RT-p51": ["Q174K", "E207A", "E291D", "P294T", "M357K", "T403M", "E432D"], "RT-p66": ["Q174K", "E207A", "P294T", "M357K", "T403M", "E432D", "D471E", "Q480H", "H483Y", "K512R", "Q524K", "K527E"], "gp120": ["E19D", "T21E", "N64D", "I126M", "A146S", "K150R", "N160T", "K315Q", "-374T", "-375N", "E401R", "K404Q", "S412K", "Q479E"], "gp41": ["N42S", "Q56K", "L108Q", "E119Q", "E121D", "G129Q", "L130I", "T212S", "N239S", "L264I"], "nef": ["V16I", "K104Q", "E108D", "L198M"], "p1": ["H9N"], "p6": ["K33R", "E34D"], "pro": ["L10I"], "rev": ["K14T", "L73F", "T82H"], "tat": ["R53K", "Q60H", "D67N", "P77A"], "vif": ["I66V", "V98I"], "vpr": ["A89V"], "vpu": ["P76-", "W77-", "D80N", "D81N"]}, "labels": {"aa": "RT-p51: Q174K, E207A, E291D, P294T, M357K, T403M, E432D; RT-p66: Q174K, E207A, P294T, M357K, T403M, E432D, D471E, Q480H, H483Y, K512R, Q524K, K527E; gp120: E19D, T21E, N64D, I126M, A146S, K150R, N160T, K315Q, -374T, -375N, E401R, K404Q, S412K, Q479E; gp41: N42S, Q56K, L108Q, E119Q, E121D, G129Q, L130I, T212S, N239S, L264I; nef: V16I, K104Q, E108D, L198M; p1: H9N; p6: K33R, E34D; pro: L10I; rev: K14T, L73F, T82H; tat: R53K, Q60H, D67N, P77A; vif: I66V, V98I; vpr: A89V; vpu: P76-, W77-, D80N, D81N"}}, "children": [{"name": "other_NODE_0000043", "node_attrs": {"div": 0.23509999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A359G", "G424A", "C426T", "A494G", "G518A", "G614T", "C662A", "A665G", "A697C", "G717A", "T734C", "C823G", "G829A", "G908T", "G911A", "T1040C", "T1094C", "A1116C", "A1217G", "T1271G", "C1292G", "C1403T", "G1430A", "A1442G", "A1701T", "T1723-", "A1783C", "G1784-", "C1785-", "G1845A", "T1873C", "A2026G", "A2057C", "T2095C", "A2380G", "G2392T", "C2452T", "A2500T", "T2542A", "G2602A", "A2614G", "A2809G", "A2829T", "T3118A", "C3178T", "T3181A", "C3207T", "T3253C", "G3264A", "A3454G", "T3496A", "A3524G", "A3595G", "A3601C", "G3664A", "G3667A", "A3675G", "A3919G", "A3934G", "G3997A", "A4531G", "A4650C", "A4658G", "T4697C", "G4805A", "C4883T", "A4904G", "T4916C", "A4958T", "A4968G", "G4995A", "A5051T", "A5054G", "C5160T", "A5161G", "A5215T", "C5227A", "A5246G", "C5248A", "G5257A", "A5366G", "G5370A", "T5371G", "A5373G", "A5375C", "G5382T", "A5385G", "A5431G", "A5432C", "T5457C", "A5493G", "A5495C", "C5539A", "A5545G", "G5558A", "T5604-", "C5614-", "G5620T", "A5623G", "T5626A", "A5640T", "A5656C", "T5687A", "A5711G", "A5720G", "G5725A", "A5728T", "A5734T", "-5824C", "C5826T", "C5831T", "T5836G", "A5866-", "C5916A", "A5917G", "T6151C", "C6160A", "-6167A", "-6177T", "-6200A", "-6202C", "-6204C", "-6208A", "-6212A", "-6215A", "G6220C", "G6224A", "A6232G", "A6234G", "T6511C", "G6578A", "A6640G", "C6660T", "-6689A", "A6778-", "A6790C", "A6825T", "-6833A", "-6834A", "-6835C", "-6836A", "-6838A", "A6840C", "-6955G", "A6962G", "-6969G", "-6980G", "-6982G", "-6983A", "-6985A", 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"L273T", "E280Q", "G281I", "N287S"], "nef": ["K39R", "D54S", "I101V", "Y102H", "E151K", "S163C", "C169S", "M182V", "M198Q"], "p17": ["R30K", "N109K", "D121A", "V128I"], "p24": ["A31G", "S33N", "I129L", "D187E"], "p6": ["T8S", "T22I", "Q35P"], "p7": ["R11T"], "pro": ["G16E"], "rev": ["D7N", "S8T", "A15T", "A68T", "L78I", "T91D", "G98A"], "tat": ["E2D", "K19A", "N24K", "K40T", "Q54H", "R57G", "S61N", "P84Q"], "vif": ["N22H", "H127Q", "I128V", "A137T", "H192C"], "vpr": ["T19M", "N48E", "V89R", "N91D", "A93S", "S94G"], "vpu": ["T2-", "E5Q", "I6V", "I17L", "V26A", "F27Y", "K35R", "K38R", "D40N", "R41W", "I43F", "L61T", "V65A", "M67L", "-70E", "-71M", "-72G", "-74L", "-75V", "-76L", "-77G"]}, "labels": {"aa": "RT-p51: Q245M, A371V, R390K; RT-p66: Q245M, A371V, R390K, T477A, E527G; gp120: N102E, T104S, E144V, Y145H, V153I, D157S, T172A, T269I, D294E, H324L, G361N, S370G, -380T, -383N, N414V, R416E, -433N; gp41: V72I, N133S, E148D, V187I, F206L, L273T, E280Q, G281I, N287S; nef: K39R, D54S, I101V, Y102H, E151K, S163C, C169S, M182V, M198Q; p17: R30K, N109K, D121A, V128I; p24: A31G, S33N, I129L, D187E; p6: T8S, T22I, Q35P; p7: R11T; pro: G16E; rev: D7N, S8T, A15T, A68T, L78I, T91D, G98A; tat: E2D, K19A, N24K, K40T, Q54H, R57G, S61N, P84Q; vif: N22H, H127Q, I128V, A137T, H192C; vpr: T19M, N48E, V89R, N91D, A93S, S94G; vpu: T2-, E5Q, I6V, I17L, V26A, F27Y, K35R, K38R, D40N, R41W, I43F, L61T, V65A, M67L, -70E, -71M, -72G, -74L, -75V, -76L, -77G"}}, "children": [{"name": "MH078558", "node_attrs": {"div": 0.2804, "accession": "MH078558", "clade_membership": {"value": "other"}, "country": {"value": "NG"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEURF11NG005"}, "LANL_subtype": {"value": "A7"}}, "branch_attrs": {"mutations": {"nuc": ["A302G", "G378T", "G394A", "G395A", "A412G", "G413C", "A418G", "C467T", "G480T", "T485C", "A500G", "T525A", "C535T", "C539T", "A571T", "G608A", "A645C", "A653G", "G656A", "A660G", "A662G", "A704G", "A705G", "C710T", "G712A", "G770A", "G771C", "C773T", "T774C", "A776G", "T824A", "A866G", "C872A", "C902T", "G906A", "C917T", "G920A", "A968G", "A1002G", "T1004G", "C1060A", "C1118A", "C1178T", "T1214C", "G1232A", "A1265C", "A1359T", "A1361C", "G1418A", "A1449G", "A1450G", "-1459G", "C1478T", "C1491A", "A1498C", "T1547C", "T1646C", "A1657G", "A1694G", "A1709G", "C1722T", "-1723G", "G1730A", "G1731A", "A1742G", "C1744T", "C1903T", "A2003C", "A2023G", "C2080T", "A2113G", "A2127C", "T2129C", "C2149G", "A2293G", "T2440C", "T2449C", "G2459A", "A2463G", "A2470G", "C2488T", "C2596T", "A2616G", "G2693A", "T2737G", "G2833A", "A2839C", "G2914A", "G2921A", "C2930T", "C2942A", "C2976T", "A2977G", "G3019A", "A3043G", "C3067T", "A3079G", "A3154G", "A3208G", "A3226G", "C3232T", "A3233G", "A3279G", "A3302G", "A3340G", "G3439A", "G3458T", "G3463A", "A3507G", "G3508A", "C3541T", "T3542G", "T3551C", "C3628T", "A3630G", "A3685G", "G3694A", "G3718A", "A3748G", "T3757A", "G3769A", "C3823T", "C3826T", "G3836A", "C3843T", "T3850C", "T3856C", "G3859A", "T3946C", "A3952G", "A3961G", "A3985G", "C3995T", "A4059C", "G4060A", "T4075C", "A4105G", "C4129T", "G4175A", "A4182C", "A4189G", "T4412C", "G4549A", "A4570T", "G4642A", "A4721G", "A4740T", "C4761T", "A4788G", "T4799G", "G4838A", "G4856A", "C4889T", "C4911A", "C4977A", "A4993C", "G5036A", "A5049G", "A5055G", "G5062C", "A5065G", "A5090G", "G5114A", "C5186A", "A5188C", "T5286C", "A5302G", "A5336G", "T5354C", "C5361G", "C5398T", "C5406T", "A5421G", "G5448A", "T5466C", "C5478T", "A5480C", "C5487T", "C5491G", "A5494G", "A5548C", "C5551T", "T5600C", "-5604G", "C5615-", "T5616-", "T5617A", "A5619T", "A5621T", "T5624C", "C5630G", "A5689T", "A5703G", "T5705G", "G5708A", "T5735A", "G5737A", "G5747T", "T5778C", "T5801G", "A5805G", "A5825C", "G5838A", "G5864-", "A5865-", "A5868G", "C5869A", "C5884T", "T5929C", "A5957G", "C5958T", "G5963A", "A5965G", "A6022G", "A6023C", "A6024C", "G6029A", "A6031T", "C6067T", "G6076A", "G6079A", "G6086A", "A6087C", "A6103C", "C6110G", "A6160G", "-6164T", "-6165C", "T6166C", "-6169C", "-6171A", "-6172G", "A6173C", "-6175T", "C6178T", "A6180G", "C6184A", "A6185-", "A6186-", "T6187-", "A6188-", "C6189-", "-6196A", "A6197T", "-6201A", "-6203T", "-6205T", "-6206G", "-6207A", "-6211T", "-6218T", "A6223C", "G6225T", "A6226G", "A6235G", "T6252C", "G6274A", "A6278C", "G6280A", "A6282G", "T6287A", "A6288C", "G6311T", "T6315C", "C6318A", "A6324G", "A6332T", "A6335G", "A6336G", "T6337C", "A6338C", "C6340A", "C6347T", "C6412T", "T6439C", "A6464G", "G6466A", "G6481A", "T6493G", "A6500T", "A6505G", "T6523C", "C6545T", "C6563T", "T6579A", "T6586G", "G6593A", "T6598C", "C6601A", "A6628G", "T6637G", "C6641G", "C6647G", "A6664G", "T6688C", "-6693A", "G6743A", "G6750A", "A6773G", "A6775T", "A6776G", "C6777-", "G6779-", "A6785G", "C6792T", "T6793G", "A6800C", "A6801G", "A6818G", "T6827C", "A6842G", "C6843A", "T6849G", "C6850A", "A6857C", "T6863G", "G6871A", "T6875A", "G6935A", "C6937T", "C6949G", "-6958G", "T6961C", "-6981A", "-6984C", "C6988T", "A6989G", "G6990A", "-6994A", "A6996G", "C6999T", "T7011A", "C7014G", "T7015C", "C7020A", "C7024T", "G7026A", "A7065G", "A7089C", "A7108G", "A7132G", "T7144G", "A7148G", "A7149C", "C7158A", "G7160A", "A7161G", "-7162G", "-7164C", "-7165T", "G7198A", "C7201T", "T7228C", "A7296G", "A7297G", "T7309C", "A7315G", "A7318G", "G7322T", "A7375G", "G7405A", "C7429T", "G7441A", "C7498T", "A7500G", "A7522G", "C7590A", "T7622A", "T7630A", "T7642A", "G7668A", "A7676G", "G7688C", "A7691G", "T7692C", "A7701G", "G7726A", "C7742T", "A7743T", "T7774C", "C7801T", "G7976A", "C8044G", "G8055A", "A8093G", "A8128G", "C8129T", "A8130C", "T8159G", "T8182C", "C8220T", "A8241G", "A8271G", "T8278C", "G8279T", "T8281C", "T8288A", "A8352C", "A8362G", "C8369A", "A8372G", "G8373C", "T8374C", "C8382T", "G8387A", "A8432G", "A8455C", "G8469A", "T8480C", "T8495A", "T8498C", "T8507C", "G8508T", "G8537A", "A8564G", "T8595C", "C8651A", "C8699T", "C8702T", "T8720C", "A8750T", "G8861A", "G8868C", "T8923G", "C8934G", "A8969C", "C8970T", "C8975A", "T8976C", "G8991A", "G8994A", "T9014G", "C9078T", "A9082G", "T9097A", "A9106G"], "INT": ["A21T", "A23V", "Q95P", "K136T"], "RT-p51": ["K11T", "E122K", "D123G", "K173T", "K174R", "A200T", "F214L", "M245I", "E248D", "V276I", "L283I", "T294M", "I380V", "K395R", "M403V"], "RT-p66": ["K11T", "E122K", "D123G", "K173T", "K174R", "A200T", "F214L", "M245I", "E248D", "V276I", "L283I", "E291D", "T294M", "I380V", "K395R", "M403V", "A455S", "E471G", "Y483D"], "gp120": ["E4R", "N5-", "T35V", "V37M", "I56M", "E59N", "E78T", "Q86E", "-114S", "-115N", "-116S", "-117E", "-118L", "-119I", "-120T", "-121Y", "-122N", "-123M", "-124T", "K127R", "V133T", "K142Q", "K143R", "H145T", "I153L", "V154A", "P155Q", "N158G", "N159G", "T160N", "N213K", "T216S", "V242K", "E247K", "N261K", "S263A", "Q265E", "D297N", "R299K", "R307G", "T308E", "K309-", "N311D", "T313M", "K316R", "R322G", "F325L", "-328N", "I331E", "S337A", "L341I", "S365R", "W367Y", "-368S", "N369R", "T371M", "-372N", "-373G", "N375W", "-376E", "-377T", "-378N", "-379D", "-381G", "-382I", "I386K", "T387S", "P389Q", "R391K", "Q404R", "K412P", "N432A", "E436R", "T439E", "E481G"], "gp41": ["I4M", "V7F", "I24M", "Q66R", "S107T", "D109E", "D113E", "R122K", "S125G", "I130A", "Q147L", "A151S", "G225R", "D247E", "S251N", "I264V", "R276S", "W286G", "T306I", "E313G", "Q323R", "G326C", "F329I"], "nef": ["K4Q", "K7R", "S9R", "I10M", "V11P", "P14S", "E38A", "V43I", "A53P", "A56S", "E64D", "F85L", "M173I", "D174E", "E176P", "Q198E"], "p1": ["N9S"], "p17": ["A15S", "R20Q", "K26S", "K28R", "G49C", "M61I", "L64I", "A67V", "Y79F", "I104L", "K109E", "N124D", "S126N"], "p2": ["N9G", "-12S"], "p24": ["A14P", "V59I", "I91V", "T110N", "T210S"], "p6": ["L15W", "M17I", "G18R", "I21M"], "p7": ["Q9K"], "pro": ["K69Q"], "rev": ["E11D", "R43K", "R66G", "H82R", "T94V", "V104G", "S112P"], "tat": ["A21P", "Q35P", "L39V", "T40A", "T58P", "P59S"], "vif": ["R19K", "S52C", "T68A", "L109M", "E117D", "P131T", "Q136P", "T155A", "T157A", "R159T", "K160R"], "vpr": ["A4T", "I61T", "Q86G"], "vpu": ["P3-", "L4I", "Q5L", "V6A", "V7I", "A8G", "I28L", "L33W", "R34K", "F43Y", "D44N", "R47I", "E66A", "H73P"]}, "labels": {"aa": "INT: A21T, A23V, Q95P, K136T; RT-p51: K11T, E122K, D123G, K173T, K174R, A200T, F214L, M245I, E248D, V276I, L283I, T294M, I380V, K395R, M403V; RT-p66: K11T, E122K, D123G, K173T, K174R, A200T, F214L, M245I, E248D, V276I, L283I, E291D, T294M, I380V, K395R, M403V, A455S, E471G, Y483D; gp120: E4R, N5-, T35V, V37M, I56M, E59N, E78T, Q86E, -114S, -115N, -116S, -117E, -118L, -119I, -120T, -121Y, -122N, -123M, -124T, K127R, V133T, K142Q, K143R, H145T, I153L, V154A, P155Q, N158G, N159G, T160N, N213K, T216S, V242K, E247K, N261K, S263A, Q265E, D297N, R299K, R307G, T308E, K309-, N311D, T313M, K316R, R322G, F325L, -328N, I331E, S337A, L341I, S365R, W367Y, -368S, N369R, T371M, -372N, -373G, N375W, -376E, -377T, -378N, -379D, -381G, -382I, I386K, T387S, P389Q, R391K, Q404R, K412P, N432A, E436R, T439E, E481G; gp41: I4M, V7F, I24M, Q66R, S107T, D109E, D113E, R122K, S125G, I130A, Q147L, A151S, G225R, D247E, S251N, I264V, R276S, W286G, T306I, E313G, Q323R, G326C, F329I; nef: K4Q, K7R, S9R, I10M, V11P, P14S, E38A, V43I, A53P, A56S, E64D, F85L, M173I, D174E, E176P, Q198E; p1: N9S; p17: A15S, R20Q, K26S, K28R, G49C, M61I, L64I, A67V, Y79F, I104L, K109E, N124D, S126N; p2: N9G, -12S; p24: A14P, V59I, I91V, T110N, T210S; p6: L15W, M17I, G18R, I21M; p7: Q9K; pro: K69Q; rev: E11D, R43K, R66G, H82R, T94V, V104G, S112P; tat: A21P, Q35P, L39V, T40A, T58P, P59S; vif: R19K, S52C, T68A, L109M, E117D, P131T, Q136P, T155A, T157A, R159T, K160R; vpr: A4T, I61T, Q86G; vpu: P3-, L4I, Q5L, V6A, V7I, A8G, I28L, L33W, R34K, F43Y, D44N, R47I, E66A, H73P"}}}, {"name": "KX389622", "node_attrs": {"div": 0.28815999999999997, "accession": "KX389622", "clade_membership": {"value": "other"}, "country": {"value": "NG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09NG010499"}, "LANL_subtype": {"value": "A7"}}, "branch_attrs": {"mutations": {"nuc": ["A369C", "G378A", "C379A", "G386A", "A418C", "A423C", "A425G", "G428A", "C435A", "G452A", "C471G", "T473C", "C476T", "C496G", "A516C", "A530G", "C537A", "A562G", "T572C", "A605C", "A644G", "A654C", "A663C", "A669C", "A673G", "A674G", "A692C", "A706G", "C713T", "C731T", "T774A", "T782C", "G791A", "C827T", "G977A", "T992A", "T1001G", "A1017C", "G1022A", "A1089G", "C1137T", "T1182C", "C1211T", "G1268A", "C1330A", "C1331T", "T1334C", "A1352G", "T1385C", "G1388A", "-1455C", "-1456A", "-1457A", "A1458-", "C1460-", "A1461G", "G1474A", "T1481C", "G1486A", "A1495G", "A1499C", "T1502C", "T1559C", "A1588G", "G1589A", "A1592G", "A1607G", "G1720T", "C1721A", "C1722-", "G1724-", "G1725-", "G1726-", "G1727-", "A1728-", "T1729-", "G1730-", "A1743G", "T1749C", "C1761T", "A1762C", "C1825A", "A1826G", "C1831T", "A1857G", "A1915G", "A1926G", "C1985A", "T1986C", "C2044T", "G2134A", "A2212T", "G2215A", "T2257C", "A2260T", "G2273A", "A2311G", "T2353C", "A2416G", "A2455G", "G2456C", "A2519G", "G2524A", "C2613A", "A2615G", "C2635A", "C2740T", "A2767G", "A2830G", "A2881G", "C2909G", "T2968G", "A2974T", "G3010A", "A3031G", "A3071G", "T3121C", "A3142G", "A3196G", "G3211A", "A3217G", "A3238G", "A3247C", "A3249G", "A3265G", "A3280G", "C3322A", "T3349C", "C3359T", "A3370G", "G3398T", "G3427A", "T3469C", "C3504A", "T3535A", "T3566C", "A3578G", "A3622G", "T3644C", "A3646G", "G3679A", "A3715G", "C3751T", "G3766A", "G3772A", "A3781G", "T3793C", "A3808G", "G3816A", "C3857T", "G3866A", "A3877G", "T3967C", "A3979G", "A3982G", "A4084G", "G4092C", "G4276A", "T4288C", "A4391T", "C4396A", "A4397T", "A4498G", "A4525G", "G4573A", "T4667C", "G4677A", "C4679A", "A4684G", "T4702C", "C4761G", "A4768T", "A4773C", "G4774A", "A4775C", "T4776C", "A4784G", "G4786A", "G4816A", "A4819C", "C4820T", "T4827C", "T4858A", "A4862T", "A4863G", "T4917C", "C4937A", "T5018C", "C5053T", "A5055C", "A5059G", "A5065C", "A5069G", "G5075A", "G5086A", "A5094G", "T5147C", "C5168T", "G5176A", "C5213G", "C5214T", "G5276C", "A5285G", "G5359C", "G5362A", "C5392T", "C5393A", "G5403T", "T5412C", "C5437G", "T5472C", "G5482A", "T5483A", "T5484G", "C5491T", "T5515C", "C5554T", "A5557G", "T5562C", "A5581T", "A5587G", "G5599T", "T5602G", "A5603-", "-5611T", "-5612A", "-5613C", "-5614G", "T5620C", "A5626G", "G5647A", "A5659C", "G5671A", "T5672C", "G5673T", "A5701C", "T5704C", "A5707G", "G5708T", "A5709G", "C5727T", "C5763T", "A5788G", "C5792A", "A5793G", "C5795A", "A5796G", "C5797T", "T5799G", "T5801C", "G5802A", "A5806C", "G5808T", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5842A", "T5857A", "-5866C", "T5899G", "G5902A", "C5924T", "T5951C", "G5954C", "T5964C", "C5989T", "A6008G", "T6026C", "G6044A", "T6046G", "C6067G", "G6076T", "A6088G", "C6101A", "T6148C", "-6164A", "-6165G", "-6169G", "-6170G", "-6171T", "-6172C", "A6174C", "-6175A", "G6179A", "C6183A", "A6186G", "A6192C", "A6194C", "-6196C", "C6198A", "T6199C", "-6201C", "-6203G", "-6205C", "-6206C", "-6207C", "C6209A", "T6210A", "-6211C", "T6213A", "A6214C", "C6216A", "T6217C", "-6218A", "G6225A", "C6241T", "T6242A", "T6244C", "T6246A", "A6253G", "A6263G", "G6267T", "T6287C", "A6304G", "A6305C", "G6311A", "T6322A", "G6323A", "A6324C", "T6325A", "A6329G", "T6331A", "T6334C", "A6336C", "T6337G", "C6340T", "T6385C", "T6395A", "C6396A", "C6397T", "C6412A", "G6451A", "T6457G", "G6466T", "C6482A", "A6489G", "A6535C", "A6568G", "A6571G", "G6573A", "G6575A", "A6577C", "T6582G", "A6583G", "A6589C", "T6599C", "C6607T", "C6618T", "T6634A", "C6641T", "A6648C", "C6661T", "A6669G", "A6683G", "-6693G", "A6728G", "T6745C", "-6778T", "A6810G", "A6811C", "C6812G", "G6819A", "G6821A", "A6822G", "C6826T", "A6837C", "A6848G", "A6854C", "T6856A", "A6859T", "A6877G", "C6938T", "C6951A", "T6957C", "-6958A", "C6964G", "C6966A", "-6971A", "-6972C", "-6973A", "-6974A", "-6975A", "-6976T", "-6981G", "-6984T", "A6986G", "A6987G", "-6994G", "A7000T", "A7036G", "A7044G", "T7045A", "C7088A", "A7093G", "C7114T", "C7124A", "C7127A", "A7133G", "C7134T", "T7150G", "T7159A", "-7162C", "-7164A", "-7165G", "T7217C", "T7222C", "G7225A", "C7250T", "A7269G", "G7276A", "A7345G", "G7459A", "T7516G", "T7597C", "C7625T", "A7627T", "A7633C", "G7640A", "C7658G", "A7673G", "C7678T", "G7688A", "A7690C", "A7700T", "A7701C", "A7705G", "T7783C", "A7799C", "A7818G", "A7840G", "A7846G", "A7880G", "T7894C", "T7913C", "A7921G", "G7995A", "A8011C", "C8047T", "C8112T", "T8138A", "C8168G", "T8169C", "A8180G", "G8216A", "G8268C", "A8275C", "T8287C", "C8291A", "T8332A", "G8349A", "G8350A", "A8364G", "G8373A", "T8374A", "A8405G", "T8444C", "A8446G", "T8456G", "G8490T", "C8499G", "G8516A", "A8525T", "A8531T", "C8552T", "T8582C", "A8584T", "A8591G", "A8597C", "C8607T", "A8608T", "C8651T", "C8676T", "C8699A", "T8740C", "A8746T", "C8747T", "C8775T", "G8784A", "A8786G", "A8794G", "G8807A", "C8831T", "G8834A", "T8835C", "G8862-", "A8863-", "G8864-", "G8868A", "A8874G", "T8883C", "A8885G", "G8888A", "A8893G", "G8894A", "G8936A", "A8950T", "G8971-", "T8972-", "C8978A", "C9023A", "T9028C", "T9029A", "A9042G"], "INT": ["R14K", "V31I", "G106A", "N134D", "T206S", "D207E", "I208L"], "RT-p51": ["K39N", "V60I", "D121H", "I142V", "K174E", "P272A", "D291E", "I326V", "K385R", "V435L"], "RT-p66": ["K39N", "V60I", "D121H", "I142V", "K174E", "P272A", "I326V", "K385R", "V435L", "T470N", "H480Q", "S491P", "I495V", "R512K"], "gp120": ["S1R", "E4D", "Y33H", "D34H", "V37A", "N52D", "P57N", "D64K", "N71K", "E74D", "L83I", "N105K", "-106V", "-107T", "-109N", "-110N", "-111N", "-112T", "-113I", "-114E", "-115K", "-116E", "-117M", "-118R", "E125-", "M126-", "K127-", "S130T", "F131Y", "V133M", "I137V", "R138I", "I151L", "S157T", "N159E", "N161T", "S162N", "S181N", "N201K", "E204N", "P210T", "K212R", "G240E", "E241N", "V242I", "I243R", "R245S", "T255I", "Q265P", "N272S", "K277E", "H280R", "T292A", "K309E", "E319G", "Q320E", "R322K", "E323R", "-327N", "-328T", "K329T", "I332V", "N334Q", "Q335N", "N361D", "T366N", "-368T", "T371N", "-372W", "-376G", "-377I", "-378G", "-379S", "-381E", "-382T", "N397R", "L424I", "L425I", "T427V", "N432K", "N435T", "E436D", "T437K", "K472R"], "gp41": ["N96T", "Q108Y", "E110D", "D113N", "Q119E", "I124V", "Q129N", "N166H", "K172R", "I193V", "R231K", "T270I", "R276H", "W279R", "L289A", "S293G", "D305N", "G322A", "R324S", "L330I"], "nef": ["G3N", "S8G", "V11K", "Q35R", "A50S", "Q61H", "E63D", "Y81F", "H89F", "I133T", "Y135F", "V148M", "K151R", "D175T", "E176-", "R178G", "K184R", "R194I", "Y203F"], "p17": ["K12Q", "A15K", "K28T", "K30Q", "L34I", "L46V", "A54G", "M61L", "L68I", "K76R", "Q90H", "I107L", "K110Q", "K112Q", "Q113R", "N124S"], "p2": ["-12Q", "I13V"], "p24": ["L15I", "H87Q", "M96L", "S120G", "T200N"], "p6": ["S14I", "L15G", "G16-", "M17-", "G18-", "E19-", "I21E", "S23A", "S24P", "P25S", "-26P", "Q28S", "P49Q", "S51L"], "p7": ["R3K", "R7K", "K10R", "T11N", "K41R"], "pro": ["I10V", "K20R", "K43R", "L63T"], "rev": ["V16A", "I55L", "P67S", "V97E", "S107C", "E111G"], "tat": ["P6Y", "E9D", "V36K", "Y47H", "H60Y", "N61D", "I69L", "K71E"], "vif": ["V31I", "K33R", "F39S", "L59V", "D61V", "R63H", "R67K", "R77K", "D78A", "L91Q", "K92N", "R93G", "Y111H", "P156L", "T157P", "K158R", "K160T", "R167K", "T170A"], "vpr": ["Y15H", "N28Q", "P37V", "E58Q", "I61V", "R85P", "S96L"], "vpu": ["-2Y", "P3A", "V14I", "I18L", "V22T", "K32Q", "R34V", "T61A", "V79I"]}, "labels": {"aa": "INT: R14K, V31I, G106A, N134D, T206S, D207E, I208L; RT-p51: K39N, V60I, D121H, I142V, K174E, P272A, D291E, I326V, K385R, V435L; RT-p66: K39N, V60I, D121H, I142V, K174E, P272A, I326V, K385R, V435L, T470N, H480Q, S491P, I495V, R512K; gp120: S1R, E4D, Y33H, D34H, V37A, N52D, P57N, D64K, N71K, E74D, L83I, N105K, -106V, -107T, -109N, -110N, -111N, -112T, -113I, -114E, -115K, -116E, -117M, -118R, E125-, M126-, K127-, S130T, F131Y, V133M, I137V, R138I, I151L, S157T, N159E, N161T, S162N, S181N, N201K, E204N, P210T, K212R, G240E, E241N, V242I, I243R, R245S, T255I, Q265P, N272S, K277E, H280R, T292A, K309E, E319G, Q320E, R322K, E323R, -327N, -328T, K329T, I332V, N334Q, Q335N, N361D, T366N, -368T, T371N, -372W, -376G, -377I, -378G, -379S, -381E, -382T, N397R, L424I, L425I, T427V, N432K, N435T, E436D, T437K, K472R; gp41: N96T, Q108Y, E110D, D113N, Q119E, I124V, Q129N, N166H, K172R, I193V, R231K, T270I, R276H, W279R, L289A, S293G, D305N, G322A, R324S, L330I; nef: G3N, S8G, V11K, Q35R, A50S, Q61H, E63D, Y81F, H89F, I133T, Y135F, V148M, K151R, D175T, E176-, R178G, K184R, R194I, Y203F; p17: K12Q, A15K, K28T, K30Q, L34I, L46V, A54G, M61L, L68I, K76R, Q90H, I107L, K110Q, K112Q, Q113R, N124S; p2: -12Q, I13V; p24: L15I, H87Q, M96L, S120G, T200N; p6: S14I, L15G, G16-, M17-, G18-, E19-, I21E, S23A, S24P, P25S, -26P, Q28S, P49Q, S51L; p7: R3K, R7K, K10R, T11N, K41R; pro: I10V, K20R, K43R, L63T; rev: V16A, I55L, P67S, V97E, S107C, E111G; tat: P6Y, E9D, V36K, Y47H, H60Y, N61D, I69L, K71E; vif: V31I, K33R, F39S, L59V, D61V, R63H, R67K, R77K, D78A, L91Q, K92N, R93G, Y111H, P156L, T157P, K158R, K160T, R167K, T170A; vpr: Y15H, N28Q, P37V, E58Q, I61V, R85P, S96L; vpu: -2Y, P3A, V14I, I18L, V22T, K32Q, R34V, T61A, V79I"}}}]}, {"name": "other_NODE_0000044", "node_attrs": {"div": 0.22202999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C1220T", "G1404A", "G1452C", "T1676C", "C1693T", "C1756T", "-1786C", "T2386A", "T2503C", "T2605C", "A2612G", "A2626C", "G2925A", "C3140T", "A3293G", "G3529A", "T3668C", "C3799T", "A4181C", "T4799C", "T4914C", "C5361A", "A5375G", "C5451T", "-5611A", "-5612C", "-5613T", "A5625C", "T5627G", "A5628G", "T5641C", "A5643G", "G5653T", "C5654T", "A5658C", "C5679T", "A5718G", "T5739A", "G5775A", "G5791T", "C5831A", "T5843A", "C5851T", "T6334A", "G6368A", "A6635G", "-6832A", "-6971A", "-6974A", "-6994T", "A7107T", "A7366G", "T7603C", "A7627G", "T7852A", "G7915A", "A7943G", "G7944A", "G7997A", "A7998C", "C8005G", "C8171A", "A8172T", "G8194A", "C8213T", "C8221T", "C8223T", "A8555G", "G8753A", "C8756A", "A8816G", "C8903T", "G8917A", "G8929A", "C9108-"], "INT": ["K136Q"], "RT-p51": ["K173A", "R277K", "T400A"], "RT-p66": ["K173A", "R277K", "T400A"], "gp120": ["T35K", "-124G", "N261D", "S263P", "E319K", "K418V", "D446N"], "gp41": ["R214E", "D232T", "R277L", "Q290I", "T307I", "L340F"], "nef": ["I10L", "R192K", "R196Q"], "p17": ["I107M"], "p2": ["-10P", "A11N"], "p24": ["E180D", "G225S"], "p6": ["P5L"], "rev": ["E32R", "R50N", "H53D", "D99R", "A108D"], "tat": ["G79R"], "vif": ["Y110H"], "vpu": ["V7W", "A16F", "D44E", "E62S", "E63T", "H73-", "V79-"]}, "labels": {"aa": "INT: K136Q; RT-p51: K173A, R277K, T400A; RT-p66: K173A, R277K, T400A; gp120: T35K, -124G, N261D, S263P, E319K, K418V, D446N; gp41: R214E, D232T, R277L, Q290I, T307I, L340F; nef: I10L, R192K, R196Q; p17: I107M; p2: -10P, A11N; p24: E180D, G225S; p6: P5L; rev: E32R, R50N, H53D, D99R, A108D; tat: G79R; vif: Y110H; vpu: V7W, A16F, D44E, E62S, E63T, H73-, V79-"}}, "children": [{"name": "other_NODE_0000045", "node_attrs": {"div": 0.25083, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G378T", "C435T", "A520G", "A530G", "T549A", "T560C", "T596C", "A605G", "G615A", "G683-", "G696A", "C698T", "A699G", "A705G", "T767C", "A810G", "G870T", "C871G", "T904C", "C917T", "T1004A", "A1067G", "C1115A", "G1232A", "T1296C", "C1350A", "T1385C", "G1418A", "G1443A", "A1445G", "G1487A", "A1565G", "G1661A", "T1682C", "G1687A", "A1735G", "G1736A", "-1746T", "-1747C", "-1748C", "T1752-", "C1753-", "T1754-", "A1768T", "T1796C", "T1828A", "A1894G", "T2087C", "A2164G", "C2263T", "G2273A", "A2311G", "G2332A", "G2350A", "G2389A", "C2467T", "C2488T", "G2518T", "G2548A", "A2569C", "G2725A", "C2740A", "C2749T", "A2752G", "A2788G", "A2828C", "A2842G", "C2960T", "A3025G", "A3151G", "A3192G", "A3277G", "G3307T", "A3340G", "T3469C", "T3644C", "A3655G", "A3682G", "A3703G", "G3766A", "T3793C", "G3796A", "G3836A", "C3889T", "A3907G", "A3989G", "A3991T", "C4117T", "T4144C", "G4175A", "A4195G", "T4282G", "G4294A", "A4376G", "T4543C", "G4549A", "C4679T", 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"nef": ["E15A", "T28E", "E38D", "H40Y", "S46N", "Y102W", "D149E", "E152A", "N157T", "M168I", "E176P", "Y202F"], "p17": ["A15S", "E62G", "S72T", "V94I", "D121N", "T122A", "N124D"], "p2": ["V7M"], "p24": ["I27V", "A47C", "I58T", "D128E", "P207A"], "p6": ["S3N", "E19G", "P25L", "Q30L", "-36Q", "L50*"], "p7": ["R3K"], "rev": ["D7S", "R39K", "A68E", "E116N"], "tat": ["N12K", "N24R", "Q54L", "R78Q", "K85E"], "vif": ["V51I", "R90K", "K92R", "K158R"], "vpr": ["P37V", "V70I", "F72Y", "R85P", "Q86S"], "vpu": ["I18L", "D60E", "V65M", "-69N", "-70L", "-71D", "-72F"]}, "labels": {"aa": "INT: A21T, I72V, I201V; RT-p51: V60I, K366R, E404D; RT-p66: V60I, K366R, E404D; gp120: T3A, D34E, I56M, D64E, T104H, -106V, -111N, -112T, I137L, K142Q, E144V, V153L, S162N, L249I, T250S, T255N, Q265K, K277T, I279V, H280R, A288T, -326P, -327N, I343V, S347I, T366S, -373S, T374N, N375E, R416N, T437N, G443I; gp41: V7F, R46K, Q129E, N140K, Q147L, E220G, G221R, N298T, L304F, I307L, I321V; nef: E15A, T28E, E38D, H40Y, S46N, Y102W, D149E, E152A, N157T, M168I, E176P, Y202F; p17: A15S, E62G, S72T, V94I, D121N, T122A, N124D; p2: V7M; p24: I27V, A47C, I58T, D128E, P207A; p6: S3N, E19G, P25L, Q30L, -36Q, L50*; p7: R3K; rev: D7S, R39K, A68E, E116N; tat: N12K, N24R, Q54L, R78Q, K85E; vif: V51I, R90K, K92R, K158R; vpr: P37V, V70I, F72Y, R85P, Q86S; vpu: I18L, D60E, V65M, -69N, -70L, -71D, -72F"}}, "children": [{"name": "AM000053", "node_attrs": {"div": 0.29298, "accession": "AM000053", "clade_membership": {"value": "other"}, "country": {"value": "CD"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97CD_KCC2"}, "LANL_subtype": {"value": "A4"}}, "branch_attrs": {"mutations": {"nuc": ["T12A", "-23A", "T24-", "A101G", "T154C", "-167A", "T201C", "T305A", "T308C", "C426A", "G463A", "A503C", "G519A", "C531T", "A540C", "T572C", "T575C", "G607A", "T635C", "G650A", "A654C", "A669C", "-683A", "A697G", "A715G", "G716A", "A806G", "A815G", "C851T", "G920A", "A941G", "T978A", "A980G", "C1118T", "A1151G", "G1192A", 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"C3644A", "A3670G", "G3679A", "C3904T", "T3967C", "C3995T", "C4132T", "G4145A", "A4176G", "A4273G", "A4397T", "C4534T", "A4555T", "G4573A", "C4576A", "A4644G", "T4674C", "A4693T", "T4697A", "G4766A", "G4786A", "G4805T", "A4819G", "A4877G", "G4913A", "G4923A", "A4924C", "C4937A", "C4955T", "T4969G", "G4981A", "A5015G", "A5061G", "G5062C", "G5185A", "C5186A", "A5213G", "A5293T", "T5356C", "A5367G", "A5410G", "C5454T", "T5475C", "A5480C", "C5491G", "C5514A", "A5544C", "A5555G", "G5561A", "G5599T", "T5600A", "C5612A", "G5620-", "A5621-", "A5622-", "G5629T", "G5635A", "A5664C", "T5672G", "C5678T", "G5699A", "A5712G", "A5717G", "C5727T", "A5728T", "G5837T", "T5841C", "G5842A", "C5869A", "T5899C", "A5926G", "G5939C", "A5947T", "G5963C", "T5964A", "A5970T", "A5983C", "A6015T", "A6016C", "A6023G", "C6031T", "A6046G", "G6082T", "A6088T", "A6098C", "A6111G", "A6112C", "A6119C", "T6125C", "G6133A", "T6148C", "T6166-", "A6168-", "A6173C", "-6175G", "A6176C", "-6177C", "C6178A", "A6180T", "C6183A", "A6186G", "-6196T", "C6209A", "T6210A", "-6212G", "-6215G", "C6216A", "C6217A", "-6218G", "A6219T", "A6221C", "A6222C", "A6223G", "A6232G", "A6234C", "A6268T", "T6287C", "A6288G", "T6289G", "C6318A", "A6319G", "A6324G", "A6338G", "T6361C", "A6376C", "A6388C", "A6407G", "A6448G", "C6457A", "A6461C", "G6490A", "G6526A", "A6529T", "C6563T", "A6576G", "G6578A", "T6582A", "A6583G", "A6594C", "G6605T", "T6637C", "G6638A", "A6639T", "C6660G", "C6661T", "A6664G", "A6691G", "A6712G", "G6743A", "G6767C", "C6769T", "A6780C", "A6788G", "A6790T", "C6797T", "A6799C", "G6802T", "G6806T", "G6809A", "C6812G", "A6813C", "A6814C", "-6835T", "C6862A", "T6875C", "T6883G", "A6887C", "C6888A", "T6895G", "A6900T", "G6940A", "C6951G", "A6956G", "T6957C", "-6958G", "A6962G", "C6966G", "-6969G", "-6972T", "-6976C", "-6977A", "-6978A", "-6979C", "A6987T", "C6988T", "A6989G", "-6993G", "G6995A", "A6996G", "A6998G", "A7012G", "G7062A", "C7084T", "A7096C", "A7101C", "A7149C", "A7154G", "C7156A", "-7162G", "T7192G", "G7198A", "A7315G", "T7406G", "G7426A", "A7470G", "A7633G", "G7640A", "T7642C", "G7668A", "G7677A", "C7678T", "A7700G", "A7701G", "A7705C", "G7735A", "C7742T", "C7755A", "G7773A", "C7792A", "T7929C", "A7992G", "C8031A", "C8047T", "C8068T", "A8069G", "G8070T", "T8082C", "A8143G", "A8171G", "A8173G", "A8191G", "A8204G", "T8206C", "T8210G", "T8211C", "G8216A", "A8219G", "C8222T", "G8231A", "A8236T", "T8256C", "A8388G", "A8396C", "C8415G", "A8438T", "A8441C", "T8546C", "T8567A", "T8568A", "T8569C", "G8590C", "T8595G", "C8603T", "C8741T", "A8746T", "A8750T", "A8815G", "C8828T", "G8864T", "C8913T", "T8923G", "C8928A", "A8977G", "C8978A", "A8979C", "G8997-", "A9005G", "G9024C", "G9027A", "T9028G", "C9068T"], "INT": ["A124T", "N134S", "I208L"], "RT-p51": ["P4S", "K39N", "K64R", "E122A", "D123N", "I135T", "S163T", "A173S", "K281R", "L283I", "V292I", "D335G", "T369S", "A371V"], "RT-p66": ["P4S", "K39N", "K64R", "E122A", "D123N", "I135T", "S163T", "A173S", "K281R", "L283I", "E291D", "V292I", "D335G", "T369S", "A371V", "R512I", "L517I"], "gp120": ["N5K", "D29H", "K31N", "V37Q", "N39I", "Q54L", "P57D", "E59D", "M76I", "E78D", "S82R", "Q86R", "K89Q", "C91R", "N102D", "H104Q", "N105P", "-107N", "N108S", "-109T", "-110N", "-113K", "-114V", "-115E", "-116V", "-117P", "K127T", "V133M", "R138S", "Y145R", "P155Q", "D157G", "N162D", "I185V", "N201K", "K203Q", "E241G", "V242I", "I243K", "E247A", "D251Y", "E262I", "T269S", "D297N", "V305L", "K309A", "N312D", "Q315Y", "K316N", "A318S", "Q320A", "Q335K", "T345Q", "I347M", "N349I", "-368A", "S370N", "T371I", "-372G", "N374R", "-376N", "I386M", "G403E", "N416T", "-433E", "N434T", "N435R", "N446E"], "gp41": ["I4M", "S35A", "K56R", "N96T", "D113N", "R122K", "S125N", "N133G", "L147F", "A151E", "S157N", "D163E", "L209P", "D230G", "A243E", "S256V", "L260S", "I290V", "I301V", "L303A", "D305N", "T306A", "A310T", "V318A"], "nef": ["I16V", "E18D", "P25A", "A53P", "L76T", "G83A", "F85V", "Y135F", "E158G", "Q196K", "M198L"], "p17": ["L31M", "R43K", "G62R", "P66S", "K69Q", "R91K", "D93E", "M107L", "K112Q", "N121S", "K127R"], "p2": ["A1V", "A3E", "S5R", "Q6R", "Q8M", "P10T", "N11-", "-12T"], "p24": ["L83M", "R154K", "S225-", "A228-"], "p6": ["N3K", "R4G", "L30I", "V39I"], "p7": ["Q2L"], "pro": ["I10V", "K14R", "I15V", "G16E", "R57K"], "rev": ["E10A", "T14A", "V16I", "S61R", "P67S", "Q74C", "R99G", "D108G", "I109V", "K115E"], "tat": ["K12E", "A21P", "Q35P", "L39V", "K40N", "H60R", "S62N"], "vif": ["T20A", "Y30H", "K36I", "R67K", "Q73H", "D78G", "D113T", "I128R", "R132K", "R159A"], "vpr": ["I84T", "R88G"], "vpu": ["T2N", "E5-", "A8S", "V10I", "V22G", "T24I", "V26A", "R31K", "K37R", "R41W", "-73L", "-79N"]}, "labels": {"aa": "INT: A124T, N134S, I208L; RT-p51: P4S, K39N, K64R, E122A, D123N, I135T, S163T, A173S, K281R, L283I, V292I, D335G, T369S, A371V; RT-p66: P4S, K39N, K64R, E122A, D123N, I135T, S163T, A173S, K281R, L283I, E291D, V292I, D335G, T369S, A371V, R512I, L517I; gp120: N5K, D29H, K31N, V37Q, N39I, Q54L, P57D, E59D, M76I, E78D, S82R, Q86R, K89Q, C91R, N102D, H104Q, N105P, -107N, N108S, -109T, -110N, -113K, -114V, -115E, -116V, -117P, K127T, V133M, R138S, Y145R, P155Q, D157G, N162D, I185V, N201K, K203Q, E241G, V242I, I243K, E247A, D251Y, E262I, T269S, D297N, V305L, K309A, N312D, Q315Y, K316N, A318S, Q320A, Q335K, T345Q, I347M, N349I, -368A, S370N, T371I, -372G, N374R, -376N, I386M, G403E, N416T, -433E, N434T, N435R, N446E; gp41: I4M, S35A, K56R, N96T, D113N, R122K, S125N, N133G, L147F, A151E, S157N, D163E, L209P, D230G, A243E, S256V, L260S, I290V, I301V, L303A, D305N, T306A, A310T, V318A; nef: I16V, E18D, P25A, A53P, L76T, G83A, F85V, Y135F, E158G, Q196K, M198L; p17: L31M, R43K, G62R, P66S, K69Q, R91K, D93E, M107L, K112Q, N121S, K127R; p2: A1V, A3E, S5R, Q6R, Q8M, P10T, N11-, -12T; p24: L83M, R154K, S225-, A228-; p6: N3K, R4G, L30I, V39I; p7: Q2L; pro: I10V, K14R, I15V, G16E, R57K; rev: E10A, T14A, V16I, S61R, P67S, Q74C, R99G, D108G, I109V, K115E; tat: K12E, A21P, Q35P, L39V, K40N, H60R, S62N; vif: T20A, Y30H, K36I, R67K, Q73H, D78G, D113T, I128R, R132K, R159A; vpr: I84T, R88G; vpu: T2N, E5-, A8S, V10I, V22G, T24I, V26A, R31K, K37R, R41W, -73L, -79N"}}}, {"name": "AM000054", "node_attrs": {"div": 0.29165, "accession": "AM000054", "clade_membership": {"value": "other"}, "country": {"value": "CD"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97CD_KTB13"}, "LANL_subtype": {"value": "A4"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "G386A", "A461G", "C467T", "G480A", "C496G", "G524A", "C539T", "G542T", "C558A", "G614C", "A620G", "A643C", "C672A", "G677A", "A678-", "C679-", "A680-", "C681-", "A682-", "G709A", "T734A", "G803A", "A818G", "A820G", "T824C", "T892C", "G893C", "G1016A", "G1031A", "T1064G", "T1182C", "A1242G", "C1243T", "A1263T", "C1280T", "G1313A", "T1316C", "A1329G", "G1339A", "A1400G", "A1416C", "T1439C", "-1459A", "G1474A", "A1492C", "A1495G", "C1535T", "A1644G", "G1664A", "G1685A", "G1727A", "G1737A", "T1741C", "G1763A", "A1771G", "C1786A", "C1853T", "A1867G", "T2011C", "T2062C", "T2092C", "A2211C", "A2241G", "A2254G", "T2266C", "T2383C", "A2463G", "G2473A", "C2485T", "A2510G", "A2629G", "T2638C", "G2686A", "G2704A", "G2710A", "C2715A", "C2720T", "A2746T", "T2770C", "T2779G", "A2794G", "T2824C", "A2827C", "A2920G", "A2956G", "T2968G", "A2975G", "C2976A", "C3067A", "G3127A", "T3175C", "T3181C", "A3224T", "C3225T", "A3229G", "A3238G", "G3250A", "A3265G", "C3266T", "T3399C", "C3405T", "C3415T", "G3442A", "G3448A", "A3511C", "A3565G", "A3592C", "C3600T", "A3630G", "A3642G", "A3733G", "C3751T", "G3769A", "A3871G", "A3877G", "T3898C", "A3952G", "A3961G", "C3970T", "A3988G", "C3994T", "A4064G", "G4186A", "G4276T", "T4288C", "T4412C", "A4492C", "A4546C", "C4576T", "G4582A", "G4677A", "T4691C", "A4694G", "A4729C", "A4806C", "C4824T", "C4857A", "C4898T", "T4919C", "A5049C", "C5050A", "A5051G", "C5056A", "A5094G", "G5123A", "G5128A", "G5143A", "A5159G", "C5160T", "A5161G", "A5285G", "A5293G", "T5311C", "G5370A", "A5433G", "C5437G", "A5461G", "A5462T", "A5463T", "C5479T", "A5481C", "G5482A", "T5484G", "C5496A", "C5513T", "A5545G", "C5554T", "G5627C", "G5628T", "C5639G", "T5655C", "T5666C", "C5684T", "A5703G", "T5787A", "A5788C", "C5789T", "A5806G", "G5842T", "T5929C", "T5941C", "T5944C", "A5958G", "A5965G", "A6018T", "A6023C", "A6024C", "T6026C", "A6030C", "A6032G", "A6045T", "A6060T", "A6061G", "A6065G", "T6100C", "G6121A", "A6131C", "A6136G", "G6158C", "C6160T", "-6164C", "-6165A", "-6167T", "-6169T", "-6170G", "-6171T", "-6172C", "A6174T", "-6175C", "-6177A", "G6179A", "T6181C", "C6184A", "A6185G", "A6186C", "A6188C", "C6189A", "C6193-", "A6194-", "A6195-", "A6197-", "C6198-", "T6199-", "-6204G", "-6205G", "-6206T", "-6207T", "-6208T", "-6212T", "A6214T", "-6215C", "C6216T", "-6218C", "G6224T", "A6226C", "G6227A", "A6229G", "T6231A", "T6250C", "A6251G", "T6271C", "A6273G", "G6274A", "A6305G", "T6306A", "T6307A", "A6319T", "A6326G", "T6328G", "A6329G", "C6333A", "C6426T", "G6442A", "G6451A", "T6460G", "C6496T", "A6500T", "T6523C", "T6551C", "G6569A", "G6573A", "G6575A", "A6576C", "T6590A", "C6601T", "C6612G", "C6632T", "A6636T", "A6640T", "A6648G", "C6660T", "G6725A", "C6729G", "A6730T", "G6732A", "A6757C", "C6758T", "A6764G", "C6766A", "G6771A", "G6774A", "G6779C", "A6789T", "A6790G", "A6811C", "G6821A", "C6824T", "A6825T", "A6832G", "-6835C", "T6849A", "A6857C", "T6860A", "G6905A", "C6925T", "G6935A", "A6950T", "-6958T", "T6968A", "-6969C", "G6970C", "-6972G", "-6976T", "-6993C", "A6996C", "G6997C", "A6999G", "A7000T", "C7006G", "T7009C", "C7014T", "C7024T", "A7032T", "G7058C", "A7066G", "A7094T", "A7095T", "A7132G", "A7138G", "A7148G", "A7152G", "T7153G", "C7158G", "G7160A", "A7161G", "-7162T", "A7163T", "G7190A", "G7197A", "T7217C", "A7219G", "C7264T", "A7275G", "A7279G", "T7334A", "G7390A", "A7396G", "T7400G", "C7463T", "T7489C", "A7570G", "C7590A", "T7609C", "A7629G", "A7690T", "C7703T", "A7711G", "A7721G", "G7745A", "A7763C", "A7818G", "A7880G", "T7932C", "C7950T", "G7965A", "A8011C", "T8016C", "C8044A", "C8095A", "T8155C", "T8172C", "A8180T", "G8255A", "A8272C", "T8366G", "T8374G", "C8382T", "A8453G", "T8498C", "C8499T", "T8504C", "C8514G", "G8588A", "G8597T", "A8663G", "T8687C", "C8688A", "A8739G", "C8768T", "T8770A", "G8805A", "A8806G", "C8825T", "A8829T", "G8834A", "A8859G", "T8860C", "A8915G", "A8922C", "C8934A", "G8955A", "C8960A", "G9026A", "T9072C", "A9097G", "C9129T", "A9131G", "C9181T"], "INT": ["T97A", "E167D"], "RT-p51": ["K39T", "K49R", "D123G", "T139A", "E177D", "I178M", "A207D", "D291E", "T294E", "D324E", "T377L", "V435A", "A437V"], "RT-p66": ["K39T", "K49R", "D123G", "T139A", "E177D", "I178M", "A207D", "T294E", "D324E", "T377L", "V435A", "A437V", "A502V", "E516G"], "gp120": ["K35R", "E55V", "E59A", "N60D", "E64V", "K69M", "N71D", "K93Q", "N102H", "N105Y", "-107I", "-113A", "K140R", "I151E", "N158E", "N159D", "T160K", "A191V", "D202E", "T216S", "E239K", "G240E", "E241T", "S246T", "A253G", "L260F", "D261V", "E262D", "K265R", "T269I", "A291T", "T292S", "G293D", "D294I", "H302Y", "N304E", "S306N", "R307K", "K309Q", "N312M", "K319D", "E323K", "H324F", "I332N", "S336T", "G351R", "G361S", "-368P", "-372A", "D384-", "T387I", "K393I", "V402L", "N414L", "N432D", "-433R", "N435S", "E436S", "N437Y", "R448K", "K474R"], "gp41": ["F11I", "L33V", "D109G", "E129D", "N133K", "K140E", "E148K", "K154Q", "K172R", "I193V", "I210T", "P216L", "R221K", "V238A", "D247E", "I290T", "S293C", "V318I", "Q323H"], "nef": ["S8R", "V11G", "P14S", "A53S", "L58V", "H116N", "I133V", "F143Y", "E155R", "S163C", "M173A", "D174E", "R194L", "D205N", "C206*"], "p1": ["I5V"], "p17": ["G49S", "A54G", "K69N", "L75I", "K103T", "Q113K", "T115-", "Q116-", "S125N"], "p24": ["K30R", "M54T", "T171V", "T178S", "T200A", "R203K", "A207T"], "p6": ["E20K", "I21T", "K31R"], "p7": ["Q9P", "K10R", "R11K"], "rev": ["I55L", "L83I", "S103P", "E111V"], "tat": ["K29V", "Q35Y", "V36M", "S46F", "R57G", "H60Y", "S75P", "P81S", "E86K"], "vif": ["V31I", "H48P", "T74P", "H80Y", "L91M", "E117D", "T155Q", "T157K", "T170A", "R181K", "S186N", "H192C"], "vpr": ["D7N", "T19V", "N28H", "V37M", "I61V", "I63M", "V89I"], "vpu": ["W7S", "A11G", "I20T", "M67V", "-77W", "-79Y"]}, "labels": {"aa": "INT: T97A, E167D; RT-p51: K39T, K49R, D123G, T139A, E177D, I178M, A207D, D291E, T294E, D324E, T377L, V435A, A437V; RT-p66: K39T, K49R, D123G, T139A, E177D, I178M, A207D, T294E, D324E, T377L, V435A, A437V, A502V, E516G; gp120: K35R, E55V, E59A, N60D, E64V, K69M, N71D, K93Q, N102H, N105Y, -107I, -113A, K140R, I151E, N158E, N159D, T160K, A191V, D202E, T216S, E239K, G240E, E241T, S246T, A253G, L260F, D261V, E262D, K265R, T269I, A291T, T292S, G293D, D294I, H302Y, N304E, S306N, R307K, K309Q, N312M, K319D, E323K, H324F, I332N, S336T, G351R, G361S, -368P, -372A, D384-, T387I, K393I, V402L, N414L, N432D, -433R, N435S, E436S, N437Y, R448K, K474R; gp41: F11I, L33V, D109G, E129D, N133K, K140E, E148K, K154Q, K172R, I193V, I210T, P216L, R221K, V238A, D247E, I290T, S293C, V318I, Q323H; nef: S8R, V11G, P14S, A53S, L58V, H116N, I133V, F143Y, E155R, S163C, M173A, D174E, R194L, D205N, C206*; p1: I5V; p17: G49S, A54G, K69N, L75I, K103T, Q113K, T115-, Q116-, S125N; p24: K30R, M54T, T171V, T178S, T200A, R203K, A207T; p6: E20K, I21T, K31R; p7: Q9P, K10R, R11K; rev: I55L, L83I, S103P, E111V; tat: K29V, Q35Y, V36M, S46F, R57G, H60Y, S75P, P81S, E86K; vif: V31I, H48P, T74P, H80Y, L91M, E117D, T155Q, T157K, T170A, R181K, S186N, H192C; vpr: D7N, T19V, N28H, V37M, I61V, I63M, V89I; vpu: W7S, A11G, I20T, M67V, -77W, -79Y"}}}]}, {"name": "other_NODE_0000046", "node_attrs": {"div": 0.26531, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G43C", "C96A", "G123A", "A152C", "C153T", "T154G", "T156A", "-159T", "A161G", "G162A", "G166A", "C207T", "A215G", "A216T", "A217T", "T227C", "A268G", "A271T", "A304T", "A399C", "C426A", "G458A", "T479C", "A503G", "A516T", "G534T", "C537A", "G608A", "G686A", "G702A", "G771A", "C772A", "C773T", "T788A", "T852A", "G911A", "A989T", "C1006A", "A1007G", "T1055A", "A1073G", "A1074G", "C1118T", "C1175T", "G1192A", "A1205G", "C1211T", "T1214C", "A1250G", "G1268A", "C1280T", "A1400G", "A1449C", "-1459A", "G1488A", "C1490T", "C1491G", "A1492G", "G1493C", "A1494C", "T1501G", "T1502A", "-1503A", "-1504T", "-1505T", "T1574C", "T1598C", "A1686G", "C1692T", "A1694G", "C1706T", "G1718A", "A1719-", "G1720-", "C1721-", "G1731A", "G1732A", "T1752C", "A1771G", "C1781G", "C1790T", "C1833G", "A1837G", "C1853A", "C1903A", "A1907G", "G1912A", "A2003C", "G2042A", "T2095C", "A2125G", "A2191G", "C2296T", "C2326T", "A2380G", "G2392T", "C2452T", "A2461G", "G2462A", "A2463G", "T2499C", "G2518A", "A2519G", "T2521C", "G2656A", "A2665G", "A2674G", "A2727G", "A2728T", "C2740T", "C2863T", "G2878A", "G2914A", "A2956G", "G2969A", "A3043G", "A3161G", "A3162G", "A3204C", "C3225T", "C3252T", "T3253C", "T3262C", "C3376T", "T3380C", "G3398A", "A3409G", "T3412A", "G3439A", "A3454G", "A3481G", "T3526A", "T3542A", "C3550T", "A3595G", "A3622G", "A3637G", "G3643T", "G3674C", "A3684G", "T3755C", "C3756A", "T3757A", "T3829C", "T3844C", "G3859A", "T3865C", "T3898C", "G3915A", "A3952C", "A3988G", "C3995A", "G3997A", "A4076C", "A4078G", "G4170A", "A4285G", "T4288C", "T4291C", "A4372G", "C4471T", "C4652T", "G4677A", "T4697G", "T4702A", "C4724T", "T4769C", "A4781G", "G4782A", "G4802A", "G4816A", "C4883A", "C4902T", "C4925T", "T4932G", "C4965G", "C4976A", "A5005C", "C5006A", "A5007C", "C5019T", "C5050A", "C5056A", "G5062T", "T5078C", "G5086A", "G5176A", "A5200G", "T5224G", "C5227A", "A5230G", "C5237T", "C5248T", "G5257A", "C5351A", "T5357A", "A5361G", "A5372C", "A5376G", "A5385G", "A5396G", "A5432C", "A5433C", "T5436G", "A5444G", "G5448T", "A5471G", "T5472G", "C5478T", "A5494C", "C5496A", "A5534G", "A5537G", "A5544C", "A5548G", "C5551T", "C5579T", "G5599A", "A5644G", "C5651T", "A5652G", "T5670A", "A5680C", "T5686G", "T5687G", "T5704G", "A5707C", "G5708T", "A5712G", "A5739G", "G5781A", "T5787C", "A5806G", "-5812G", "C5826T", "C5827T", "T5828A", "T5836C", "G5837T", "A5840T", "G5856A", "T5857A", "A5866C", "A5965G", "A6066G", "G6086A", "A6087C", "T6109C", "T6134A", "T6142C", "C6163T", "-6164A", "-6167G", "-6169C", "-6170T", "-6171A", "-6172C", "G6179-", "A6180-", "A6182C", "C6184T", "A6188G", "A6195C", "-6200A", "-6204C", "-6218G", "T6242A", "A6251G", "A6275G", "T6285A", "T6290G", "A6305T", "T6306C", "A6326G", "T6328A", "A6339G", "C6340T", "G6345A", "C6412T", "G6466C", "A6489G", "C6496T", "C6499T", "T6511C", "T6523C", "A6535G", "T6541C", "C6548T", "C6559T", "A6574G", "A6577G", "T6582C", "A6620T", "A6628G", "A6640G", "A6669G", "T6688-", "A6691-", "C6692-", "-6697A", "-6698C", "-6699A", "-6700C", "-6701A", "-6702T", "A6714G", "A6715G", "T6733-", "A6734-", "T6735-", "A6736-", "C6752A", "T6772C", "T6793A", "G6809A", "A6818C", "G6819A", "G6821-", "A6822-", "C6826A", "T6827A", "T6828A", "-6830G", "-6831G", "-6838C", "A6840G", "A6841C", "A6855C", "C6862T", "T6863G", "T6922C", "C6937A", "C6938T", "T6953-", "G6954-", "A6956T", "-6958C", "G6970C", "-6977A", "-6978A", "-6979C", "-6980A", "-6985T", "-6993A", "G6995A", "G6997A", "T7015C", "A7101G", "A7123C", "C7124A", "C7127T", "T7144G", "A7148C", "T7153C", "C7156T", "T7159A", "G7160A", "-7162T", "A7163-", "G7190A", "G7197A", "C7201T", "A7238C", "A7255G", "A7269G", "A7313C", "C7324A", "C7354T", "T7386C", "G7417A", "T7433C", "C7561T", "A7589G", "T7597C", "T7604A", "T7630A", "T7636A", "C7645T", "G7688A", "C7699T", "G7717A", "C7801A", "A7818G", "T7877G", "G7883A", "T7888G", "T7912A", "T7929A", "T7932C", "C7950T", "C7960A", "A7992G", "T8065C", "A8191G", "A8196G", "A8207T", "G8208C", "T8215A", "A8241G", "A8276T", "T8288A", "A8294C", "C8311T", "G8335A", "C8369T", "A8370G", "G8402A", "C8406A", "G8424C", "T8451C", "T8456G", "C8494A", "C8499G", "T8511C", "G8512A", "A8525G", "A8564G", "T8582C", "T8595G", "C8652A", "A8653G", "C8666A", "T8687C", "A8701T", "T8711C", "C8751T", "C8771T", "A8795G", "G8807A", "A8815C", "G8864T", "C8869A", "A8870G", "G8873C", "G8894A", "C8927T", "C8934A", "T8947A", "G8955A", "C8966A", "G9026A", "T9040C", "A9042G", "T9073C", "-9109T", "G9128C"], "INT": ["G47E", "L74I", "I101L", "W132*", "N134D"], "RT-p51": ["D123S", "I135T", "I142V", "E177D", "K211S", "Q245K", "V292I", "K356G", "E370A", "T377I", "T386I", "V435I"], "RT-p66": ["D123S", "I135T", "I142V", "E177D", "K211S", "Q245K", "E291D", "V292I", "K356G", "E370A", "T377I", "T386I", "V435I", "Y483N", "E527Q", "K530R", "S554Q"], "gp120": ["S1K", "E4D", "E21A", "P57N", "N71S", "E78T", "L94I", "N105D", "-106Y", "M126I", "S130T", "K141E", "S146A", "I151S", "N158E", "R164K", "E204N", "K212R", "I243T", "L249F", "I256L", "N272S", "K277R", "Q287R", "Q300K", "N312R", "R322-", "E323-", "K329S", "N334T", "Q335K", "S337A", "W367-", "S370T", "-372D", "-373M", "-376S", "-377S", "-378N", "-380N", "-381N", "-382T", "-383N", "N414K", "V418I", "L424I", "R448K", "K462Q", "K472R"], "gp41": ["I4L", "V28A", "N96A", "S101T", "D109E", "E148D", "N166K", "K172R", "S192A", "V194I", "N195K", "L209H", "I210T", "P216L", "D230G", "N298S", "E313G", "I325L", "F329I", "N331H"], "nef": ["M20I", "T28P", "T51N", "D54S", "W57Q", "F85V", "Q104R", "D108E", "Y120F", "E158A", "E177D", "D205N"], "p17": ["L31M", "M61L", "A67S", "L68I", "G123R", "K127N"], "p2": ["N9H"], "p24": ["A14N", "S41T", "P92Q", "I115V", "R154K"], "p6": ["S3G", "S14L", "L15M", "G18K", "K31R", "D34E", "-36P", "Q52E"], "p7": ["G8S", "Q9G", "K10Q", "R11K", "I12R", "-13I"], "pro": ["T12R", "L19I", "D35E", "N37D", "K69H", "V82I"], "rev": ["S8A", "E10A", "F73L", "K115E", "E116K"], "tat": ["N7S", "K19T", "A21P", "N23S", "Y32W", "K40Q", "K53R", "Q54R", "T58A", "P59S", "P68L", "L74I", "S75P", "P81S", "P84Q"], "vif": ["V31I", "F39Y", "V66I", "R77K", "D99E", "S116A", "E117D", "H127E", "S130R", "N140T", "K141Q", "T155K", "T157K", "R159I", "R167K"], "vpr": ["N28Q", "H40Q", "H45Y", "Q86R", "N91D", "S94G"], "vpu": ["I13V", "A15V", "I25L", "F27G", "L33V", "R34L", "M67V", "D78-"]}, "labels": {"aa": "INT: G47E, L74I, I101L, W132*, N134D; RT-p51: D123S, I135T, I142V, E177D, K211S, Q245K, V292I, K356G, E370A, T377I, T386I, V435I; RT-p66: D123S, I135T, I142V, E177D, K211S, Q245K, E291D, V292I, K356G, E370A, T377I, T386I, V435I, Y483N, E527Q, K530R, S554Q; gp120: S1K, E4D, E21A, P57N, N71S, E78T, L94I, N105D, -106Y, M126I, S130T, K141E, S146A, I151S, N158E, R164K, E204N, K212R, I243T, L249F, I256L, N272S, K277R, Q287R, Q300K, N312R, R322-, E323-, K329S, N334T, Q335K, S337A, W367-, S370T, -372D, -373M, -376S, -377S, -378N, -380N, -381N, -382T, -383N, N414K, V418I, L424I, R448K, K462Q, K472R; gp41: I4L, V28A, N96A, S101T, D109E, E148D, N166K, K172R, S192A, V194I, N195K, L209H, I210T, P216L, D230G, N298S, E313G, I325L, F329I, N331H; nef: M20I, T28P, T51N, D54S, W57Q, F85V, Q104R, D108E, Y120F, E158A, E177D, D205N; p17: L31M, M61L, A67S, L68I, G123R, K127N; p2: N9H; p24: A14N, S41T, P92Q, I115V, R154K; p6: S3G, S14L, L15M, G18K, K31R, D34E, -36P, Q52E; p7: G8S, Q9G, K10Q, R11K, I12R, -13I; pro: T12R, L19I, D35E, N37D, K69H, V82I; rev: S8A, E10A, F73L, K115E, E116K; tat: N7S, K19T, A21P, N23S, Y32W, K40Q, K53R, Q54R, T58A, P59S, P68L, L74I, S75P, P81S, P84Q; vif: V31I, F39Y, V66I, R77K, D99E, S116A, E117D, H127E, S130R, N140T, K141Q, T155K, T157K, R159I, R167K; vpr: N28Q, H40Q, H45Y, Q86R, N91D, S94G; vpu: I13V, A15V, I25L, F27G, L33V, R34L, M67V, D78-"}}, "children": [{"name": "MW353966", "node_attrs": {"div": 0.28931999999999997, "accession": "MW353966", "clade_membership": {"value": "other"}, "country": {"value": "CV"}, "date": {"value": 2010.0}, "Strain_name": {"value": "CV.10.115"}, "LANL_subtype": {"value": "A8"}}, "branch_attrs": {"mutations": {"nuc": ["T372C", "G386A", "A431G", "G455A", "A537G", "A557G", "T570C", "A654C", "A658G", "G716T", "T734C", "A833G", "G1022A", "C1103T", "C1136T", "G1256A", "C1292A", "T1444C", "G1724C", "G1725A", "G1726T", "A1728G", "T1729A", "A1732T", "G1734A", "A1740G", "T1741G", "A1742G", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "T1792C", "C1825T", "A2005T", "G2054A", "G2074A", "T2083C", "G2155A", "G2173A", "A2198G", "C2199A", "G2224A", "G2228A", "G2246A", "A2341G", "G2358A", "G2429A", "G2430A", "A2470G", "G2539T", "G2663A", "G2710A", "G2731A", "G2732A", "G2785A", "A2839G", "C2845T", "G2947A", "A3027G", "A3046G", "A3071G", "A3091G", "G3166A", "C3223T", "A3224G", "G3244A", "G3246A", "A3286G", "G3288A", "G3304A", "A3400G", "G3440A", "G3479A", "G3508A", "T3530C", "A3630G", "G3680A", "G3699A", "G3716A", "G3717A", "G3758A", "T3778C", "G3785A", "G3787A", "G3869A", "A3880G", "G4098A", "C4204T", "C4396T", "A4495G", "A4498G", "C4501T", "A4684G", "C4911A", "A4968T", "G5143A", "A5159G", "C5242T", "A5336T", "A5352G", "A5355T", "T5371G", "C5384T", "T5391A", "G5543A", "A5576C", "C5584T", "G5635A", "A5665G", "A5717G", "A5720G", "A5734C", "A5751C", "A5757G", "A5781T", "T5791-", "C5792G", "C5795G", "C5797A", "G5802C", "G5803C", "A5805C", "G5806T", "T5807C", "G5808T", "G5809-", "G5810-", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818G", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824G", "T5826G", "A5843G", "T5887C", "G5912T", "A5957G", "C5974A", "A6031C", "T6091C", "C6160G", "-6165A", "-6175T", "-6177A", "-6179A", "-6180C", "C6182T", "G6188T", "C6190T", "C6195T", "-6196A", "A6197G", "-6201A", "-6202G", "-6203A", "-6205T", "-6206A", "-6207A", "-6208T", "C6209A", "-6211A", "-6212A", "T6213C", "-6215G", "C6216A", "T6217A", "A6281C", "T6287C", "A6329G", "T6337A", "A6345T", "A6354G", "T6400C", "G6425A", "A6500T", "T6598C", "C6647T", "A6648C", "A6668G", "C6670T", "A6672T", "T6676-", "A6677-", "C6678-", "A6680C", "G6681A", "-6688A", "-6689A", "T6722C", "G6731-", "G6732-", "T6738C", "A6765C", "G6771A", "A6773G", "G6779A", "A6789G", "A6791G", "A6848G", "A6858C", "T6860C", "G6905A", "A6936G", "G6948A", "G6963C", "C6964A", "T6967A", "T6968G", "-6969A", "-6972T", "-6973G", "-6975G", "-6976T", "C6979T", "-6981G", "-6982C", "-6983C", "-6984A", "G6990C", "C6991A", "A7005G", "C7014T", "G7054A", "A7096G", "G7102T", "A7155G", "A7315G", "A7621G", "G7640A", "C7684T", "A7688C", "A7732C", "T7825C", "G7862A", "G7942A", "G7964A", "G7977A", "C8047T", "T8213G", "C8232T", "G8242T", "A8264T", "G8268C", "A8284G", "G8304C", "T8366G", "G8373C", "T8374C", "G8375A", "C8382G", "A8458G", "C8460T", "T8498C", "G8506T", "T8507A", "G8513A", "G8517C", "G8590C", "A8718T", "A8719G", "G8834A", "G8905A", "T8923G", "A8967G"], "INT": ["G4R", "V32I", "W108*"], "RT-p51": ["T35E", "G45R", "G51R", "W88*", "G112K", "G190R", "W212*", "G213R", "M230I", "K311R", "I326V", "I377V", "W383*", "G384E", "W398*", "M403I", "I435M"], "RT-p66": ["T35E", "G45R", "G51R", "W88*", "G112K", "G190R", "W212*", "G213R", "M230I", "K311R", "I326V", "I377V", "W383*", "G384E", "W398*", "M403I", "I435M", "E449K", "G462R", "E516D", "E529K", "W535*", "G541K", "G555R"], "gp120": ["A20S", "K35A", "E59D", "N102E", "T104N", "-107N", "-109T", "-115S", "-116S", "-117N", "-118S", "-119N", "-120I", "-121A", "-122K", "-123K", "K143Q", "Y145H", "N159D", "N161K", "K164I", "N167S", "A191T", "T216S", "Q265S", "S272G", "N273I", "N274K", "T275Q", "R276K", "S278I", "Y290H", "A291T", "G296-", "D297-", "I298-", "N304T", "S306N", "R307G", "T313A", "I332V", "K335T", "S336P", "G351R", "S365N", "-368F", "T374S", "S377H", "-379T", "N381K", "D384G", "T387I", "K412Q", "R416S", "-433S", "N434T", "E438-", "T439-"], "gp41": ["D113N", "E143D", "V187I", "G221R", "G225E", "L304V", "A310V", "I321L", "G322A", "L325F", "R334T", "F340L"], "nef": ["S8R", "L10V", "V11P", "P14A", "K39R", "H40Y", "C55L", "E59Q", "G83A", "N126C", "N157T", "R188H"], "p17": ["I68V", "Y79H", "D93E", "M107L", "Q108R"], "p2": ["V7A"], "p24": ["D187E"], "p6": ["G16E", "E19-", "I21G", "T22I", "S23T", "-26L", "L38P", "V39S", "P49L"], "pro": ["G86R"], "rev": ["A10T", "I21L", "R39K", "P67S"], "tat": ["P3L", "D5E", "R56H", "N67T", "P70S", "R78Q"], "vif": ["K33R", "L109M", "I128L", "S186N"], "vpr": ["T19A", "Q77H", "I83V", "I84L", "V89G", "S96T"], "vpu": ["V10I", "I20V", "V26A", "K37R", "K38R", "I43L", "E48D", "E58D", "L61T", "S62-", "G68-", "-69V", "-70E", "-71V", "-72G", "-73E", "-74Y", "-75D", "-76L", "-77L", "-78V", "-79G"]}, "labels": {"aa": "INT: G4R, V32I, W108*; RT-p51: T35E, G45R, G51R, W88*, G112K, G190R, W212*, G213R, M230I, K311R, I326V, I377V, W383*, G384E, W398*, M403I, I435M; RT-p66: T35E, G45R, G51R, W88*, G112K, G190R, W212*, G213R, M230I, K311R, I326V, I377V, W383*, G384E, W398*, M403I, I435M, E449K, G462R, E516D, E529K, W535*, G541K, G555R; gp120: A20S, K35A, E59D, N102E, T104N, -107N, -109T, -115S, -116S, -117N, -118S, -119N, -120I, -121A, -122K, -123K, K143Q, Y145H, N159D, N161K, K164I, N167S, A191T, T216S, Q265S, S272G, N273I, N274K, T275Q, R276K, S278I, Y290H, A291T, G296-, D297-, I298-, N304T, S306N, R307G, T313A, I332V, K335T, S336P, G351R, S365N, -368F, T374S, S377H, -379T, N381K, D384G, T387I, K412Q, R416S, -433S, N434T, E438-, T439-; gp41: D113N, E143D, V187I, G221R, G225E, L304V, A310V, I321L, G322A, L325F, R334T, F340L; nef: S8R, L10V, V11P, P14A, K39R, H40Y, C55L, E59Q, G83A, N126C, N157T, R188H; p17: I68V, Y79H, D93E, M107L, Q108R; p2: V7A; p24: D187E; p6: G16E, E19-, I21G, T22I, S23T, -26L, L38P, V39S, P49L; pro: G86R; rev: A10T, I21L, R39K, P67S; tat: P3L, D5E, R56H, N67T, P70S, R78Q; vif: K33R, L109M, I128L, S186N; vpr: T19A, Q77H, I83V, I84L, V89G, S96T; vpu: V10I, I20V, V26A, K37R, K38R, I43L, E48D, E58D, L61T, S62-, G68-, -69V, -70E, -71V, -72G, -73E, -74Y, -75D, -76L, -77L, -78V, -79G"}}}, {"name": "MW353967", "node_attrs": {"div": 0.29044, "accession": "MW353967", "clade_membership": {"value": "other"}, "country": {"value": "CV"}, "date": {"value": 2010.0}, "Strain_name": {"value": "CV.10.126"}, "LANL_subtype": {"value": "A8"}}, "branch_attrs": {"mutations": {"nuc": ["A419G", "A470C", "G495T", "A576G", "G614T", "A619G", "C623T", "C679A", "G712A", "C713A", "A714C", "T722C", "T774A", "T789C", "G803A", "A818G", "C827T", "A839G", "A866G", "C917T", "T944C", "G977A", "C1060A", "G1078C", "A1196G", "G1199A", "G1313A", "T1316C", "C1403T", "G1424A", "-1455C", "-1456C", "-1457A", "G1486A", "G1489A", "C1514T", "A1592G", "-1719C", "-1720T", "-1721G", "C1722A", "G1736A", "C1755T", "G1760A", "G1772A", "G1777A", "T1796C", "T1854C", "T1873C", "G2065A", "A2203G", "A2230G", "A2293G", "G2328A", "A2422G", "A2545G", "G2602A", "C2613T", "C2941T", "A2992T", "G3016A", "C3023A", "A3031C", "C3067T", "A3167G", "C3171G", "A3200T", "G3211A", "A3229G", "G3250A", "A3367G", "G3523A", "A3592G", "A3642C", "C3653G", "A3682T", "A3715G", "A3757G", "A3833C", "G3866A", "C3892T", "G3965A", "T4144C", "G4145T", "A4176G", "G4186A", "G4220A", "G4228A", "G4244A", "A4293G", "G4301C", "A4427T", "C4428T", "A4432C", "T4441A", "T4656C", "G4695A", "G4696A", "T4738C", "A4878G", "C4911T", "G4913A", "A5049G", "A5061G", "G5087A", "G5140A", "C5168G", "G5170A", "A5247G", "A5305T", "G5308A", "A5357G", "C5358A", "T5515C", "G5546A", "A5547C", "A5575G", "A5611T", "T5613A", "C5684T", "T5688A", "A5709C", "C5787A", "A5788T", "C5789T", "A5793C", "G5794A", "A5796T", "T5799G", "G5830A", "A5861G", "C5869A", "A5946G", "T5956G", "C5958A", "C6097T", "C6115T", "A6131C", "T6154C", "G6158A", "-6165C", "A6174T", "-6175G", "A6176-", "C6178-", "T6181-", "A6186C", "T6187A", "C6189T", "A6194T", "-6196C", "-6201G", "-6202C", "-6203G", "-6205A", "-6206C", "-6207C", "-6208A", "T6210C", "-6211T", "-6212C", "-6215C", "A6222C", "A6230G", "A6282G", "G6323A", "T6341A", "A6342G", "T6343C", "A6346G", "C6347A", "A6349G", "G6403A", "T6457G", "A6462G", "C6482A", "T6634C", "A6636C", "A6639T", "A6684G", "A6685G", "T6690-", "-6733A", "-6734G", "-6735A", "-6736T", "C6758T", "A6776G", "A6780C", "A6790G", "A6800G", "T6932A", "G6935C", "C6958T", "-6969T", "A6971C", "-6972A", "-6973T", "-6975C", "-6976A", "-6981T", "-6982G", "-6983A", "-6984G", "C6988T", "A6997C", "T7009A", "C7015G", "A7089G", "A7094G", "T7127A", "T7150G", "A7290G", "T7462C", "A7533G", "A7583C", "C7605T", "T7606G", "T7609C", "A7691C", "T7796A", "A7807G", "A7887G", "C7906T", "T7930C", "A7931C", "A7971G", "C7993A", "C8080A", "G8110A", "C8120-", "T8121-", "T8122-", "T8124G", "A8130T", "C8131G", "T8155C", "T8164C", "T8200C", "T8278G", "A8323T", "G8370T", "G8469A", "T8640C", "A8656G", "A8660G", "C8688A", "C8699T", "T8770A", "A8794G", "G8795T", "C8812A", "A8823G", "G8830A", "A8859G", "G8871C", "C8921T", "A8922C", "A8954G", "C8960A", "A8980G", "C9003T"], "INT": ["V31I", "D64N", "A124S", "D134G", "G149R", "E157K", "K173R", "V176L", "T218L", "K219N", "N222K"], "RT-p51": ["R78K", "A173V", "L310I", "E312D", "R358G", "S359C", "T369S"], "RT-p66": ["R78K", "A173V", "L310I", "E312D", "R358G", "S359C", "T369S", "R512K", "E516A", "Q520E", "E529D"], "gp120": ["T3A", "N5K", "K31R", "D34E", "K93Q", "-107M", "-109M", "-110T", "I126V", "K143R", "D157N", "Y163S", "N201K", "K203R", "P210T", "D261A", "E262V", "H302Y", "T308A", "K309A", "K316E", "S360T", "G361Q", "-367F", "-368N", "T371F", "-379S", "K412R", "L425I", "N432Q", "E436T", "T437N", "E479G"], "gp41": ["K77R", "T94P", "T101M", "Q129K", "I130L", "S165T", "K195R", "T210P", "E223G", "L273R", "L274G", "G275L"], "nef": ["V43I", "K105R", "H116N", "F143Y", "E151G", "N161D", "S163N", "M173V", "D177H", "R194L", "C206*"], "p17": ["A54S", "T81A", "K95R", "T115K"], "p2": ["N11P", "-12N"], "p24": ["L15I", "T110N", "G116A"], "p6": ["S24P", "P25L", "R33K"], "p7": ["R7K", "S8N"], "pro": ["I19T", "H69Q", "M89I"], "rev": ["E11T", "Y28P", "R32G", "Q49K", "L78I", "D88N", "S92G", "G93T", "T94E", "Q95T", "S103P", "S106P"], "tat": ["Y47H", "R57N", "N67D", "I74T"], "vif": ["G37K", "V51A", "I98V", "K155E", "I159V", "G185E"], "vpr": ["L22V", "N48S", "I84M"], "vpu": ["T2S", "D60E", "N80-", "N81D"]}, "labels": {"aa": "INT: V31I, D64N, A124S, D134G, G149R, E157K, K173R, V176L, T218L, K219N, N222K; RT-p51: R78K, A173V, L310I, E312D, R358G, S359C, T369S; RT-p66: R78K, A173V, L310I, E312D, R358G, S359C, T369S, R512K, E516A, Q520E, E529D; gp120: T3A, N5K, K31R, D34E, K93Q, -107M, -109M, -110T, I126V, K143R, D157N, Y163S, N201K, K203R, P210T, D261A, E262V, H302Y, T308A, K309A, K316E, S360T, G361Q, -367F, -368N, T371F, -379S, K412R, L425I, N432Q, E436T, T437N, E479G; gp41: K77R, T94P, T101M, Q129K, I130L, S165T, K195R, T210P, E223G, L273R, L274G, G275L; nef: V43I, K105R, H116N, F143Y, E151G, N161D, S163N, M173V, D177H, R194L, C206*; p17: A54S, T81A, K95R, T115K; p2: N11P, -12N; p24: L15I, T110N, G116A; p6: S24P, P25L, R33K; p7: R7K, S8N; pro: I19T, H69Q, M89I; rev: E11T, Y28P, R32G, Q49K, L78I, D88N, S92G, G93T, T94E, Q95T, S103P, S106P; tat: Y47H, R57N, N67D, I74T; vif: G37K, V51A, I98V, K155E, I159V, G185E; vpr: L22V, N48S, I84M; vpu: T2S, D60E, N80-, N81D"}}}]}]}]}]}, {"name": "other_NODE_0000047", "node_attrs": {"div": 0.18525999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G43A", "A50G", "-159A", "G166A", "A214T", "A571T", "G716-", "C1245T", "G1474A", "G1476A", "G1687A", "A1691G", "A1743G", "T1754C", "C1775A", "G1784A", "T1828A", "A1839G", "A1857T", "T1864C", "T1873C", "G1912A", "A3787C", "A3886G", "A4182C", "T4412C", "T4543A", "A5236G", "G5359C", "C5371G", "G5448A", "A5581G", "-5612A", "T5616A", "T5627C", "A5628T", "C5639G", "A5655C", "A5659G", "T5660C", "A5664C", "G5692C", "A5701G", "A5715G", "C5727A", "A5734C", "C5769A", "C5827T", "A5840T", "A6024C", "C6198G", "A6456G", "G6481A", "G6547A", "-6833A", "-6834A", "A7040G", "A7152-", "-7162G", "T7604G", "C7938A", "A8143G", "C8171T", "A8180G", "C8221A", "C8223T", "G8240A", "G8242C", "G8280T", "A8459G", "G8590C", "A8591T", "T8786G", "A8893G", "T9017C", "-9109T"], "INT": ["K136T", "D256E"], "gp120": ["H324Q", "K361Q", "I396V"], "gp41": ["S101A", "T212H", "S293G", "T307I", "E313N", "G326F"], "nef": ["G83A", "K184R"], "p17": ["Y79F"], "p6": ["S3N", "T22A", "Q30P", "D32E", "L50*"], "p7": ["G4S"], "pro": ["K14R", "K20I"], "rev": ["A108V", "E111G"], "tat": ["I69V", "P77T"], "vpr": ["R85P", "A89G"], "vpu": ["V7A", "A11G", "I18A", "E29Q", "I43L", "H73-"]}, "labels": {"aa": "INT: K136T, D256E; gp120: H324Q, K361Q, I396V; gp41: S101A, T212H, S293G, T307I, E313N, G326F; nef: G83A, K184R; p17: Y79F; p6: S3N, T22A, Q30P, D32E, L50*; p7: G4S; pro: K14R, K20I; rev: A108V, E111G; tat: I69V, P77T; vpr: R85P, A89G; vpu: V7A, A11G, I18A, E29Q, I43L, H73-"}}, "children": [{"name": "other_NODE_0000048", "node_attrs": {"div": 0.21225999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T155C", "A398G", "C467T", "A503T", "A520G", "A527G", "T549A", "A554G", "G629A", "T636C", "A642G", "A645G", "A647G", "G650A", "G651A", "T662G", "C668T", "A669C", "G677A", "A680-", "G693A", "T695G", "A699G", "C700A", "-714C", "-716A", "C731T", "A743G", "G791A", "A810G", "C830T", "T892C", "G893C", "T904C", "C917T", "G920A", "T936C", "A941G", "C947T", "A968G", "T978C", "G987C", "T988C", "T992G", "T1004C", "G1019A", "T1064A", "A1067G", "G1077A", "A1088C", "C1118T", "C1187T", "G1192A", "T1271A", "A1279G", "C1299T", "T1316C", "T1334C", "G1355A", "T1362C", "G1418A", "G1424A", "T1439C", "A1442G", "A1447C", "A1449G", "A1450G", "G1472A", "G1486A", "T1501A", "-1503A", "-1504T", "-1505T", "A1592G", "T1616A", "A1712C", "G1733A", "G1763A", "C1782-", "T1787-", "G1794A", "T1796C", "A1819G", "C1903T", "G1981A", "T2017G", "G2042A", "A2056G", "T2266C", "T2281C", "A2362G", "T2365C", "A2380C", "T2386C", "G2422A", "C2467T", "C2488T", "G2656A", "G2714A", "T2930C", "A2998G", "A3096T", "A3293G", "T3559C", "C3756G", "G3796A", "A3931C", "C3977T", "A4012G", "G4063A", "A4096G", "A4105G", "C4117T", "C4140T", "A4261C", "G4539A", "T4540C", "A4561G", "T4679C", "T4697C", "A4952T", "G4982T", "C5091T", "G5099A", "A5122G", "G5143A", "T5170G", "G5185A", "A5215C", "T5281C", "T5314C", "A5375G", "G5382C", "A5385G", "A5421G", "C5437G", "A5471G", "T5472G", "A5493G", "G5534A", "A5535G", "G5538C", "G5575A", "C5654G", "G5668A", "A5685C", "G5699A", "T5731A", "T5788A", "T5789C", "G6311A", "G6451A", "G6572A", "-6689A", "-6693C", "A6779G", "-6830G", "-6831A", "-6835A", "-6836A", "T6856C", "-6959A", "-6960A", "-6961T", "-6964T", "-6965A", "-6967T", "-6968G", "-6969G", "-6970G", "A7007-", "C7008-", "T7433C", "A7552G", "G7883A", "T7912A", "T7921C", "T7932C", "C7935A", "A7936C", "A7937C", "C7941A", "G7947A", "A8019G", "A8032G", "T8113A", "A8172T", "G8208A", "G8268T", "G8317A", "T8348G", "T8411C", "A8455C", "C8471T", "T8492C", "G8528A", "G8534T", "T8558A", "A8570G", "C8607T", "A8655C", "T8675C", "C8688A", "C8690T", "A8701T", "T8708A", "A8762G", "G8774A", "A8794C", "A8804G", "G8807A", "C8831T", "C8832T", "G8834A", "T8843C", "G8846C", "G8873C", "T8883C", "A8885G", "G8894A", "C8903T", "C8904A", "T8914G", "T8915G", "G8945T", "T8993C", "G8994T", "A9005G", "T9012C", "C9023A", "T9051A"], "INT": ["T122I", "S255N"], "RT-p51": ["Q334L", "T400A"], "RT-p66": ["E207K", "Q334L", "T400A"], "gp120": ["V153I", "E240K", "H280T", "K309E", "N312K", "N327K", "-328N", "-369N", "T385-"], "gp41": ["I24M", "V194I", "I210T", "P211H", "P213Q", "G215E", "N239S", "Q290L", "S302N", "G322V"], "nef": ["E38A", "E64D", "H89F", "K105Q", "E108D", "H116N", "Y120F", "E151A", "M168I", "R188S", "E201D", "Y202F"], "p17": ["L31M", "E62G", "S72T", "K103E", "I104V", "E106K", "N109K", "K112Q", "A120T", "T122E", "-127Q"], "p2": ["Q8S", "N9G"], "p24": ["I27V", "M54T", "I58T", "V86P", "H87Q", "M96I", "G116R", "R154K", "N183G"], "p6": ["N47S"], "p7": ["R7K", "Q9P", "I12N", "-13I"], "pro": ["V82I"], "rev": ["D7S", "S8T", "K30P", "T62A", "C89S", "D99G"], "tat": ["E2D", "Y32W", "R53K", "D67N", "S75P", "Q76T", "D80N"], "vif": ["K122N", "K179R", "S186N"], "vpr": ["A93P", "S94G"], "vpu": ["V21I", "R31K", "K32E", "L42I", "-69V", "-70D"]}, "labels": {"aa": "INT: T122I, S255N; RT-p51: Q334L, T400A; RT-p66: E207K, Q334L, T400A; gp120: V153I, E240K, H280T, K309E, N312K, N327K, -328N, -369N, T385-; gp41: I24M, V194I, I210T, P211H, P213Q, G215E, N239S, Q290L, S302N, G322V; nef: E38A, E64D, H89F, K105Q, E108D, H116N, Y120F, E151A, M168I, R188S, E201D, Y202F; p17: L31M, E62G, S72T, K103E, I104V, E106K, N109K, K112Q, A120T, T122E, -127Q; p2: Q8S, N9G; p24: I27V, M54T, I58T, V86P, H87Q, M96I, G116R, R154K, N183G; p6: N47S; p7: R7K, Q9P, I12N, -13I; pro: V82I; rev: D7S, S8T, K30P, T62A, C89S, D99G; tat: E2D, Y32W, R53K, D67N, S75P, Q76T, D80N; vif: K122N, K179R, S186N; vpr: A93P, S94G; vpu: V21I, R31K, K32E, L42I, -69V, -70D"}}, "children": [{"name": "other_NODE_0000049", "node_attrs": {"div": 0.2573, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C96A", "C160T", "G256-", "A302T", "-304A", "-305A", "G386A", "A425G", "C435T", "T473C", "G481A", "A557G", "C587A", "T641G", "A653G", "A654G", "T655C", "A659G", "C672A", "A678-", "C679-", "C694T", "G706A", "C707T", "G709A", "T718C", "T782C", "G785A", "T824C", "A878G", "G908A", "A914G", "C978A", "A1064G", "C1220T", "G1256A", "G1404A", "C1406T", "T1409C", "T1444C", "C1446T", "T1451G", "C1460-", "C1490T", "A1495G", "T1502C", "A1526G", "C1541T", "G1562A", "C1681T", "T1682C", "-1782T", "-1787C", "A1867G", "A1894G", "A1951T", "C2149T", "A2223G", "G2248A", "G2273A", "A2317G", "A2332G", "T2335C", "G2387T", "A2419G", "T2440C", "T2449G", "G2462A", "A2463G", "T2499C", "C2575T", "T2605C", "A2613T", "C2615A", "T2632G", "T2638C", "C2644T", "A2707G", "G2710A", "G2725A", "G2728C", "C2749T", "T2788A", "A2794G", "T2806C", "G2828C", "A2839C", "C2845A", "C2863T", "G2869A", "A2884G", "T2885C", "T2899C", "G2925A", "G2926A", "C2941A", "A2968C", "G2969A", "A3001G", "A3010G", "A3025G", "A3034T", "G3046C", "A3080G", "G3091A", "A3103G", "T3112C", "T3118C", "T3132A", "T3133C", "G3154A", "T3165G", "A3167G", "G3170T", "G3171C", "G3205A", "C3207T", "A3229G", "G3250A", "G3264A", "C3271T", "A3276G", "C3294T", "A3334C", "C3358T", "C3376T", "G3379A", "A3387C", "T3399C", "T3414A", "T3445A", "A3457G", "G3477A", "G3494A", "C3496T", "T3497A", "C3508A", "T3517C", "G3520A", "G3523A", "A3524G", "G3529A", "A3532G", "T3544A", "C3610T", "A3630G", "G3643A", "G3664A", "T3668C", "T3730C", "C3773T", "A3808C", "C3826T", "G3907A", "A3961G", "A4087G", "G4109A", "G4145A", "G4148A", "A4150T", "A4159C", "T4165C", "A4176G", "T4177G", "C4182A", "A4183G", "G4264A", "A4279G", "G4294A", "T4321C", "G4359C", "A4376G", "A4391T", "C4396T", "A4455T", "A4694G", "A4717T", "C4761T", "G4766A", "A4782G", "A4786G", "G4816A", "C4820T", "G4835T", "A4838G", "A4861G", "A4865C", "T4916C", "T4919C", "T4938A", "C4976A", "A4993G", "T5027C", "C5034T", "A5037G", "T5047C", "A5061G", "G5062C", "A5146C", "G5296A", "A5302G", "C5306T", "G5371T", "A5448C", "A5537G", "A5545G", "A5548C", "G5557A", "T5602A", "T5641C", "G5653A", "C5678T", "A5718G", "G5725C", "G5730A", "A5751T", "G5775A", "G5794A", "C5826-", "T5827-", "T5828-", "T5829-", "T5840A", "G5845A", "G5856A", "-5861G", "A5867C", "C5869A", "G5893A", "G5902A", "C5974T", "T5980C", "A6009G", "A6013G", "A6020G", "C6024T", "A6130G", "G6133A", "C6160T", "-6167A", "-6169T", "-6173A", "-6175T", "G6179A", "C6184T", "A6186C", "C6190T", "-6200A", "-6201G", "-6202C", "-6204G", "-6205G", "A6221-", "A6223-", "A6232G", "A6251G", "A6257T", "G6260A", "A6261T", "A6262C", "T6264C", "A6275G", "A6276T", "G6277A", "A6278C", "A6283G", "G6284C", "A6304T", "A6333G", "T6337C", "G6339A", "C6340A", "A6354G", "T6361C", "G6368A", "C6369T", "T6382C", "T6385C", "T6395A", "G6456A", "G6463A", "A6481T", "A6489C", "A6525G", "A6589G", "T6634A", "A6648T", "C6661A", "-6703A", "C6713A", "A6714G", "C6721T", "T6735A", "T6745C", "G6767C", "G6774A", "A6776G", "A6785G", "T6793C", "C6797A", "A6800C", "G6802A", "A6810G", "A6811C", "C6826A", "A6833G", "-6838T", "T6849G", "C6857A", "T6876C", "A6884G", "C6885T", "C6888T", "A6889G", "T6892C", "G6894C", "C6919T", "T6922C", "T6932A", "C6938T", "T6946C", "-6955G", "-6958T", "-6963G", "-6966C", "-6980G", "-6983A", "-6986A", "-6987A", "-6988T", "-6989A", "-6990G", "C7064A", "G7088A", "C7089G", "A7090C", "A7094C", "T7105C", "A7106T", "C7114T", "A7123G", "A7126G", "C7134T", "-7165C", "A7169G", "C7170T", "G7190A", "G7197A", "C7250T", "G7322T", "A7375G", "T7400C", "T7403C", "A7447T", "T7489A", "A7492G", "A7549G", "C7561T", "C7579T", "A7633C", "A7676G", "G7712C", "C7755A", "C7775T", "T7796A", "C7801T", "G7835A", "C7843T", "C7898A", "A7962G", "G7964A", "G7977A", "G7995A", "C8051A", "C8093A", "T8122-", "C8123-", "A8130-", "A8132-", "T8203C", "C8213T", "G8254A", "A8269G", "G8276A", "T8279G", "G8304C", "G8329A", "A8342C", "A8367T", "G8368C", "A8378G", "C8386A", "G8402A", "A8503C", "G8526A", "A8527C", "T8534C", "T8568C", "C8666T", "C8699A", "C8741T", "G8799A", "C8810T", "G8875A", "A8876G", "A8879G", "T8887G", "G8888A", "G8893C", "T9014C", "T9040C"], "INT": ["E11D", "V112I", "A125T", "N134G", "T136K", "S195T", "I201V", "T206S", "Y227F"], "RT-p51": ["K43R", "V60I", "A98S", "D123S", "I135T", "K173I", "Q174K", "E207K", "K211N", "E248D", "D250E", "R277K", "E291D", "V292I", "I329V", "F346Y", "M357R", "R358G", "A371V", "R390K", "Q394R", "A400V", "E413D", "K431T", "V435A", "F440Y"], "RT-p66": ["K43R", "V60I", "A98S", "D123S", "I135T", "K173I", "Q174K", "K211N", "E248D", "D250E", "R277K", "E291D", "V292I", "I329V", "F346Y", "M357R", "R358G", "A371V", "R390K", "Q394R", "A400V", "E413D", "K431T", "V435A", "F440Y", "R461K", "V467I", "S468T", "D471E", "T477A", "H483Q", "K512R"], "gp120": ["S1N", "T3V", "N5Q", "N52S", "I56V", "P57V", "N102D", "-106I", "-107N", "-109S", "-112T", "-114S", "-115S", "-116S", "I126M", "I133V", "T135S", "E136I", "I137T", "K141V", "K142Q", "E144Q", "K150N", "N160S", "Y163T", "R164K", "N167S", "T172I", "S181T", "K212T", "K224R", "L249F", "E265V", "Q287R", "D294E", "V305L", "R307K", "T308A", "N311D", "K316Q", "E319G", "-326E", "K327E", "I332S", "Q335K", "T344V", "S347T", "S360T", "-368K", "-371T", "-372E", "-378N", "N414Q", "T427I", "E436K", "T437S", "T439V", "D446N", "R448K"], "gp41": ["V7L", "E110D", "N125D", "E137Q", "A151E", "S165T", "V178I", "Q199K", "E220G", "G221R", "R231K", "L264I", "R277G", "L304F", "A325I", "F326V", "R334T", "A343I"], "nef": ["S8C", "A15E", "M20I", "A53P", "D54A", "E62T", "V153I", "N157T", "E177D", "R178K", "M182R", "R184T"], "p1": ["H9N"], "p17": ["G49D", "D102E", "I107A", "Q113K", "T115-", "T120M", "S124N", "S125N", "V128A"], "p2": ["V7A", "-12T"], "p24": ["L83M", "G225S"], "p6": ["P1L"], "p7": ["R3K", "K10R"], "rev": ["T8A", "E11D", "R39K", "A68E", "T82H", "S92L", "Q95R"], "tat": ["K40N", "Q54R", "R57G", "T58P", "K85E"], "vif": ["Y44F", "I66V", "K67R", "R77K", "Q83H", "K91Q", "K92R", "R93S", "S118T", "S130R", "Q136R", "K151A", "I154T", "R159A", "H187P"], "vpr": ["G89V"], "vpu": ["A16S", "T24I", "D40Q", "E48D", "-75A", "D80N"]}, "labels": {"aa": "INT: E11D, V112I, A125T, N134G, T136K, S195T, I201V, T206S, Y227F; RT-p51: K43R, V60I, A98S, D123S, I135T, K173I, Q174K, E207K, K211N, E248D, D250E, R277K, E291D, V292I, I329V, F346Y, M357R, R358G, A371V, R390K, Q394R, A400V, E413D, K431T, V435A, F440Y; RT-p66: K43R, V60I, A98S, D123S, I135T, K173I, Q174K, K211N, E248D, D250E, R277K, E291D, V292I, I329V, F346Y, M357R, R358G, A371V, R390K, Q394R, A400V, E413D, K431T, V435A, F440Y, R461K, V467I, S468T, D471E, T477A, H483Q, K512R; gp120: S1N, T3V, N5Q, N52S, I56V, P57V, N102D, -106I, -107N, -109S, -112T, -114S, -115S, -116S, I126M, I133V, T135S, E136I, I137T, K141V, K142Q, E144Q, K150N, N160S, Y163T, R164K, N167S, T172I, S181T, K212T, K224R, L249F, E265V, Q287R, D294E, V305L, R307K, T308A, N311D, K316Q, E319G, -326E, K327E, I332S, Q335K, T344V, S347T, S360T, -368K, -371T, -372E, -378N, N414Q, T427I, E436K, T437S, T439V, D446N, R448K; gp41: V7L, E110D, N125D, E137Q, A151E, S165T, V178I, Q199K, E220G, G221R, R231K, L264I, R277G, L304F, A325I, F326V, R334T, A343I; nef: S8C, A15E, M20I, A53P, D54A, E62T, V153I, N157T, E177D, R178K, M182R, R184T; p1: H9N; p17: G49D, D102E, I107A, Q113K, T115-, T120M, S124N, S125N, V128A; p2: V7A, -12T; p24: L83M, G225S; p6: P1L; p7: R3K, K10R; rev: T8A, E11D, R39K, A68E, T82H, S92L, Q95R; tat: K40N, Q54R, R57G, T58P, K85E; vif: Y44F, I66V, K67R, R77K, Q83H, K91Q, K92R, R93S, S118T, S130R, Q136R, K151A, I154T, R159A, H187P; vpr: G89V; vpu: A16S, T24I, D40Q, E48D, -75A, D80N"}}, "children": [{"name": "KM248765", "node_attrs": {"div": 0.28330999999999995, "accession": "KM248765", "clade_membership": {"value": "other"}, "country": {"value": "ES"}, "date": {"value": 2011.0}, "Strain_name": {"value": "X3208"}, "LANL_subtype": {"value": "CRF73_BG"}}, "branch_attrs": {"mutations": {"nuc": ["A217T", "A303T", "C362A", "G378A", "G424A", "A431G", "G463A", "A513C", "G519A", "G542T", "A578T", "G579T", "A604T", "G608A", "G614C", "G615A", "C636A", "A677C", "T767C", "G968T", "A978G", "A1025C", "T1055C", "G1078C", "G1090A", "T1118A", "A1278G", "C1280A", "T1385C", "G1451A", "G1452A", "-1455G", "-1456C", "-1457A", "A1458-", "A1461G", "C1571A", "A1701T", "A1735G", "G1736A", "T1741A", "A1742G", "G1743A", "C1744T", "C1745A", "-1746G", "-1747C", "-1748C", "G1760A", "A1774G", "A1776G", "A2002G", "G2134A", "A2305G", "G2389A", "A2626C", "A2727G", "A2734G", "T2770C", "A2788G", "A2845G", "T2860C", "C2975T", "C3140T", "C3194G", "A3208G", "G3307A", "C3334T", "C3415T", "G3473A", "G3483A", "C3533G", "C3545A", "A3547G", "G4105A", "T4110C", "T4126C", "A4130C", "G4131C", "A4174G", "G4183T", "A4189G", "A4225C", "C4261T", "A4474C", "A4555G", "G4561A", "G4694T", "A4751G", "C4759T", "A4774G", "T4805G", "T4820G", "T4827C", "G4878A", "A4895G", "C4911G", "T4932G", "C4965T", "T4969G", "T4982G", "A5024G", "C5050G", "G5060A", "A5065G", "G5075A", "G5086A", "G5131A", "G5141C", "T5197G", "T5203C", "G5236A", "A5259T", "T5260A", "A5261C", "T5264G", "G5265T", "G5267T", "A5268G", "A5269G", "G5270A", "T5274A", "T5275A", "C5294T", "A5362G", "G5363A", "A5376G", "C5382T", "C5511T", "A5556G", "G5561A", "A5594G", "A5616C", "T5626G", "T5628C", "G5784A", "T5787C", "A5805C", "-5824C", "-5826T", "-5827G", "-5828A", "-5829C", "A5863T", "G5872A", "C5920T", "A5926G", "C6010T", "A6030G", "C6097T", "A6159T", "-6170A", "-6172T", "A6174G", "A6180C", "-6203G", "G6204A", "-6206C", "-6207A", "-6208A", "G6224-", "C6253T", "A6303C", "T6307G", "A6326G", "A6335G", "A6336G", "A6350G", "A6352G", "A6367T", "A6376C", "G6391A", "G6392A", "C6427A", "A6464G", "C6483A", "A6488G", "G6588A", "C6612T", "A6634G", "C6692A", "A6734G", "C6752A", "A6781T", "T6787G", "G6803A", "A6831G", "-6832T", "C6874T", "T6895C", "A6926G", "A6937C", "G6940A", "T6943C", "A6945C", "T6949C", "-6956A", "-6957A", "G6968C", "-6981C", "-6982C", "-6984C", "-6985A", "C6991T", "-6992A", "-6993C", "-6994T", "-6995G", "-6996A", "-6997C", "-6998T", "-6999T", "-7000A", "-7001A", "-7002A", "-7003C", "A7060G", "C7090T", "G7101A", "-7151A", "-7152G", "-7153T", "A7155G", "A7161G", "G7162T", "-7164C", "G7198A", "C7264T", "A7275G", "A7366G", "T7370G", "A7373G", "A7402G", "A7456G", "C7463T", "T7466C", "A7533G", "G7631A", "A7632C", "A7641G", "T7642G", "A7701G", "G7729A", "A7799C", "T7801G", "C7874T", "A7998G", "T8124-", "G8125-", "G8126-", "G8127-", "A8128-", "C8129-", "C8131-", "G8133-", "T8214A", "A8222T", "G8261A", "A8262T", "A8303G", "C8304T", "G8330A", "C8331T", "A8364T", "G8388A", "A8458G", "C8480A", "C8492A", "T8498C", "C8499T", "G8561A", "C8603T", "A8604G", "G8793T", "G8804A", "A8829T", "C8869A", "A8954G", "A8970G", "-8971C", "T8973G", "-8974C", "C8975T", "T8976G", "C8999G"], "INT": ["I112T", "S119P", "K136N"], "RT-p51": ["E177D", "N211S", "P294S", "Q367E"], "RT-p66": ["E177D", "N211S", "P294S", "Q367E", "D460N", "R463K", "Q480E", "L484M"], "gp120": ["E59G", "D102I", "N107S", "S109T", "-111T", "-117E", "-118Q", "N150T", "S160T", "N161K", "T163G", "I166V", "V180I", "K204E", "P210Q", "T212A", "R245K", "A253V", "Q300K", "E309D", "D311E", "V317I", "E326G", "N358D", "Q361D", "N364T", "E372R", "-373A", "-374T", "-375N", "-376S", "-377T", "N378D", "-379L", "-380N", "R416K", "-433T", "N435G", "K436S", "K474R"], "gp41": ["S23A", "M24V", "K77R", "D110T", "D113G", "E119Q", "N133S", "N166Q", "L191F", "D232G", "L274-", "G275-", "R276-", "G277-", "F304Y", "I307L", "E320I", "I321V", "T334V"], "nef": ["V16I", "K39R", "S46R", "P53S", "S88G", "A151S", "S163C"], "p17": ["S9R", "A15T", "R30K", "M31L", "R43K", "I60L", "G62R", "K69N", "V82L", "Q90L", "V94I", "L101I", "K114N"], "p2": ["-10T", "T12V", "I13-"], "p24": ["E79D", "M83V", "E98D", "R116T", "S120N"], "p6": ["T8S", "I21K", "A22I", "P23A", "S24P", "P25S", "-26P", "E32G", "K33E"], "rev": ["K14R", "V16I", "L92-", "G93-", "T94-", "R95-", "S107P"], "tat": ["S62N"], "vif": ["K36N", "P58L", "K63R", "H73Q", "D78E", "V98I", "L109V", "S116A", "H127Y", "I128R", "T155R", "K160R", "R167K", "G182D"], "vpr": ["E13Q", "D52V", "T53P", "W54V", "E55W", "G56R", "V57E", "Q86R", "N91D", "P93S"], "vpu": ["L61T", "V65A", "E66T", "M67L", "G68-", "-71M", "-72G", "-73H", "-74D"]}, "labels": {"aa": "INT: I112T, S119P, K136N; RT-p51: E177D, N211S, P294S, Q367E; RT-p66: E177D, N211S, P294S, Q367E, D460N, R463K, Q480E, L484M; gp120: E59G, D102I, N107S, S109T, -111T, -117E, -118Q, N150T, S160T, N161K, T163G, I166V, V180I, K204E, P210Q, T212A, R245K, A253V, Q300K, E309D, D311E, V317I, E326G, N358D, Q361D, N364T, E372R, -373A, -374T, -375N, -376S, -377T, N378D, -379L, -380N, R416K, -433T, N435G, K436S, K474R; gp41: S23A, M24V, K77R, D110T, D113G, E119Q, N133S, N166Q, L191F, D232G, L274-, G275-, R276-, G277-, F304Y, I307L, E320I, I321V, T334V; nef: V16I, K39R, S46R, P53S, S88G, A151S, S163C; p17: S9R, A15T, R30K, M31L, R43K, I60L, G62R, K69N, V82L, Q90L, V94I, L101I, K114N; p2: -10T, T12V, I13-; p24: E79D, M83V, E98D, R116T, S120N; p6: T8S, I21K, A22I, P23A, S24P, P25S, -26P, E32G, K33E; rev: K14R, V16I, L92-, G93-, T94-, R95-, S107P; tat: S62N; vif: K36N, P58L, K63R, H73Q, D78E, V98I, L109V, S116A, H127Y, I128R, T155R, K160R, R167K, G182D; vpr: E13Q, D52V, T53P, W54V, E55W, G56R, V57E, Q86R, N91D, P93S; vpu: L61T, V65A, E66T, M67L, G68-, -71M, -72G, -73H, -74D"}}}, {"name": "AY882421", "node_attrs": {"div": 0.27425999999999995, "accession": "AY882421", "clade_membership": {"value": "other"}, "country": {"value": "DE"}, "date": {"value": 2001.0}, "Strain_name": {"value": "9196_01"}, "LANL_subtype": {"value": "CRF73_BG"}}, "branch_attrs": {"mutations": {"nuc": ["G158A", "A166-", "T214A", "A216C", "A255G", "C426A", "G534T", "C558A", "A562G", "G607A", "A672G", "A774T", "G956A", "A980G", "C988A", "A1050T", "C1060A", "C1088T", "A1196G", "C1211G", "-1459C", "-1460A", "A1467C", "A1500C", "C1502G", "T1783C", "T1996A", "T1997G", "A2215T", "G2459A", "A2662G", "C2671T", "C2797T", "G2821A", "A3019G", "C3055A", "C3067A", "A3145G", "A3151G", "T3359C", "A3378G", "G3442A", "G3491A", "A3538G", "G3572A", "A3595G", "T3778C", "C3787T", "A4064G", "C4123T", "C4146A", "G4156A", "A4249G", "G4366A", "A4684G", "A4725G", "T4776C", "A4781G", "T4840C", "G4881C", "T5072C", "G5176A", "T5221C", "C5237T", "A5444C", "A5563G", "C5611A", "T5614C", "T5778C", "G5791T", "A5796G", "-5812C", "-5813G", "-5814T", "-5815G", "-5816A", "-5817C", "A5825-", "C5834A", "C5862T", "T5870C", "G5912A", "A5946G", "A6015T", "A6158G", "T6163C", "-6170T", "-6172G", "A6176G", "C6183G", "-6203T", "-6225G", "-6226A", "C6293T", "T6294A", "C6318A", "A6327G", "A6336C", "A6430G", "A6547G", "A6604G", "G6638A", "A6659T", "A6734C", "T6772C", "G6779C", "A6798G", "A6812G", "G6821A", "-6832G", "A6836G", "G6935C", "-6956T", "-6957C", "G6969A", "-6971A", "-6972A", "-6973T", "-6974G", "-6975A", "-6976T", "-6977A", "-6978C", "-6979A", "-6981A", "-6982G", "-6984A", "-6985C", "-7007T", "-7008T", "-7009A", "G7026A", "G7160A", "-7164G", "T7180G", "A7269G", "T7325C", "C7328T", "C7379T", "C7463A", "A7590C", "A7627G", "G7640A", "C7658G", "G7668A", "C7702T", "G7717A", "A7734G", "C7762T", "A7782G", "G7790A", "A7791G", "A7818G", "G8001A", "C8038G", "C8047T", "-8122C", "-8123T", "-8130G", "-8132G", "C8167T", "C8220T", "T8256C", "G8264A", "T8280G", "A8284G", "A8323G", "A8370C", "G8373A", "T8374C", "C8425T", "T8450C", "C8590G", "A8652C", "A8656G", "A8746T", "G8814A", "G8876T", "A8922G", "-8971G", "-8974G"], "INT": ["T97A", "T124N"], "RT-p51": ["E40D", "E122K", "D320E", "D324E", "Q428R"], "RT-p66": ["E40D", "E122K", "D320E", "D324E", "Q428R", "V466I", "V493I"], "gp120": ["A20T", "K31R", "Q54L", "I106L", "-117W", "-124G", "L147Y", "P155Q", "N158S", "N159E", "E262K", "T269S", "T280P", "E294Q", "E309Q", "K315R", "K320E", "E323K", "N328D", "-379D", "-380T", "-381E", "-382N", "-383N", "-384S", "-385L", "R391K", "K472R"], "gp41": ["F8L", "L9F", "L54M", "N96T", "D113N", "R122K", "K144R", "N160S", "D163S", "K172R", "R233K", "T306I", "V318A", "V326G"], "nef": ["I10L", "V11T", "A28V", "K104Q", "Q105R", "Y135F", "E158K", "K178N", "I194V"], "p17": ["A67S", "L75I", "K76R", "R91K", "D93E", "K113E"], "p24": ["I15L", "P86Q", "T107S", "T110N", "G183S"], "p6": ["L35S"], "p7": ["M1L", "N12Q"], "pro": ["C67G"], "rev": ["L64V"], "tat": ["N23T", "K63E"], "vif": ["K33R", "R47G", "V85A", "D99H", "R132S"], "vpr": ["H45Y"], "vpu": ["Q2K", "S3P", "A7S", "D60E", "E62S", "E63T", "V69R", "P76H"]}, "labels": {"aa": "INT: T97A, T124N; RT-p51: E40D, E122K, D320E, D324E, Q428R; RT-p66: E40D, E122K, D320E, D324E, Q428R, V466I, V493I; gp120: A20T, K31R, Q54L, I106L, -117W, -124G, L147Y, P155Q, N158S, N159E, E262K, T269S, T280P, E294Q, E309Q, K315R, K320E, E323K, N328D, -379D, -380T, -381E, -382N, -383N, -384S, -385L, R391K, K472R; gp41: F8L, L9F, L54M, N96T, D113N, R122K, K144R, N160S, D163S, K172R, R233K, T306I, V318A, V326G; nef: I10L, V11T, A28V, K104Q, Q105R, Y135F, E158K, K178N, I194V; p17: A67S, L75I, K76R, R91K, D93E, K113E; p24: I15L, P86Q, T107S, T110N, G183S; p6: L35S; p7: M1L, N12Q; pro: C67G; rev: L64V; tat: N23T, K63E; vif: K33R, R47G, V85A, D99H, R132S; vpr: H45Y; vpu: Q2K, S3P, A7S, D60E, E62S, E63T, V69R, P76H"}}}]}, {"name": "other_NODE_0000050", "node_attrs": {"div": 0.2522, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-304C", "-305T", "C426A", "A437C", "G519A", "A521C", "G542A", "A563G", "A654T", "C679T", "-680G", "G683A", "A697G", "C698T", "A759C", "T760C", "G761A", "T767C", "C902T", "T983C", "A989G", "C1013T", "G1016A", "A1025G", "T1037C", "A1073G", "C1175A", "T1238C", "A1248C", "A1278G", "C1403T", "G1430A", "-1455G", "-1456C", "-1457A", "A1458T", "-1459C", "T1481C", "C1514T", "A1644C", "A1656C", "C1693T", "C1712T", "A1765G", "A1775G", 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"G4949A", "T4969G", "C4976T", "C5006T", "A5036G", "C5038A", "A5046G", "G5140A", "T5147C", "T5356G", "A5362G", "A5418G", "A5462G", "C5478T", "T5617C", "T5626G", "A5677G", "C5685T", "A5727T", "T5739A", "C5792A", "C5795A", "C5797T", "T5799G", "T5801C", "G5802A", "A5804C", "A5805G", "A5806C", "G5808T", "G5809-", "G5810-", "G5811-", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824G", "C5831A", "C5834A", "T5843G", "G5848A", "C5851T", "T5860C", "-5861T", "A5866T", "A5906G", "A5911C", "A5915G", "C5916A", "C5917T", "A5921C", "A5938G", "G5954A", "A5955G", "A5959T", "G5963A", "T5964G", "A5965C", "C5989A", "A6019G", "G6023C", "A6025T", "G6037A", "T6091C", "C6097T", "C6110G", "C6115T", "T6134C", "A6142T", "T6181A", "C6189A", "G6195C", "G6198A", "-6209A", "-6213C", "-6216T", "-6217G", "-6219A", "-6226A", "A6229C", "C6253A", "A6262G", "A6268G", "G6274A", "T6289C", "A6292G", "T6298C", "A6316G", "A6322T", "T6347C", "A6362G", "C6363T", "C6375A", "A6394G", "C6397T", "G6403T", "C6427T", "T6457G", "A6464G", "C6496T", "C6499T", "A6532G", "C6545T", "T6551C", "A6553G", "T6562C", "C6563T", "G6577A", "G6578A", "A6583G", "T6598C", "T6599C", "G6605A", "T6613C", "A6617G", "C6618T", "A6628G", "G6638A", "T6641A", "C6642G", "G6644A", "A6685G", "C6692A", "T6694A", "-6697T", "G6712A", "C6752A", "C6758T", "A6764G", "C6766G", "G6771A", "A6788G", "A6790G", "T6793G", "T6794A", "A6799G", "G6806A", "C6807A", "T6808A", "A6810C", "T6815C", "A6818G", "G6819C", "A6820T", "T6828A", "T6829C", "T6849C", "C6850A", "C6856A", "A6858C", "T6860C", "G6905A", "C6951G", "T6953-", "-6963A", "-6966A", "-6971A", "-6973T", "C6991-", "A7027G", "A7036G", "A7044G", "C7045A", "G7055A", "A7056G", "A7096C", "G7101C", "C7107T", "C7127A", "T7130A", "-7151A", "-7153C", "C7156T", "G7182C", "T7192C", "G7198A", "A7225G", "G7244A", "A7275G", "C7289G", "G7309T", "G7324C", "G7339A", "A7366G", "A7396G", "T7411C", "A7428G", "A7456G", "G7519A", "T7537C", "A7553C", "T7603C", "A7627T", "T7642C", "G7657A", "G7660A", "A7669G", "T7691C", "T7692A", "T7703C", "A7747C", "G7807A", "A7998G", "G8030C", "G8050C", "C8092A", "G8255A", "G8264A", "T8277G", "T8278A", "C8293G", "A8294C", "A8323T", "T8332G", "T8333C", "G8349A", "G8354A", "A8370-", "A8405G", "A8429G", "A8458G", "T8582C", "C8741A", "C8812A", "G8814A", "A8816T", "T8867C", "A8870T", "T8945C", "G9015A", "G9016A"], "INT": ["R20K", "S119P"], "RT-p51": ["T35V", "D123E", "S162C", "E207Q", "Q245V", "K356R", "R358K", "T377Q", "T403M"], "RT-p66": ["T35V", "D123E", "S162C", "K207Q", "Q245V", "K356R", "R358K", "T377Q", "T403M", "R463K", "N519S", "S534A"], "gp120": ["T3S", "E4D", "K18E", "E19D", "T21D", "T23P", "D34S", "V37S", "Q86E", "N108-", "N113-", "E125D", "N158-", "N159-", "S162-", "T170V", "T174K", "E183D", "N201R", "K204E", "V242I", "I243M", "D251N", "T255V", "E262K", "V264I", "Q300K", "H302Y", "N304E", "S306N", "K312E", "L314I", "K315Q", "A318K", "E319A", "R322A", "Q324S", "F325Y", "-326N", "K329I", "I331S", "S336P", "P341L", "M345T", "G351R", "Q361E", "T366S", "W367N", "-368N", "-372N", "N397R", "E401R", "K404Q", "S412A", "R416T", "L425I", "L426I", "-433S", "N434T", "G443A", "E464K", "K474R", "Q479E"], "gp41": ["N42S", "I84L", "M118I", "L130H", "E148D", "D232G", "A243P", "F263L", "R277S", "V318I", "A325G", "N331H"], "nef": ["G3S", "I10V", "K39R", "E158N", "E176D"], "p1": ["I5L"], "p17": ["G62S", "D93E", "I107L", "T115M", "D121G"], "p2": ["-10A", "-12S"], "p24": ["M10P"], "p6": ["P5L", "E29G", "K33-", "E34-", "Y36-", "P37-", "T39I"], "pro": ["L63P"], "rev": ["S61T", "A68P"], "tat": ["N24K", "K29R", "Q54H", "S61G"], "vif": ["F39C", "R41K", "R47T", "H48N", "K50R", "V51I", "D61E", "D101G", "L109Q", "I128R", "R132S", "I154V", "G185D"], "vpr": ["Y15H", "I84S", "Q86R"], "vpu": ["A16G", "T24A", "D44E", "E66D", "P76-", "D78V", "V79G", "D81N"]}, "labels": {"aa": "INT: R20K, S119P; RT-p51: T35V, D123E, S162C, E207Q, Q245V, K356R, R358K, T377Q, T403M; RT-p66: T35V, D123E, S162C, K207Q, Q245V, K356R, R358K, T377Q, T403M, R463K, N519S, S534A; gp120: T3S, E4D, K18E, E19D, T21D, T23P, D34S, V37S, Q86E, N108-, N113-, E125D, N158-, N159-, S162-, T170V, T174K, E183D, N201R, K204E, V242I, I243M, D251N, T255V, E262K, V264I, Q300K, H302Y, N304E, S306N, K312E, L314I, K315Q, A318K, E319A, R322A, Q324S, F325Y, -326N, K329I, I331S, S336P, P341L, M345T, G351R, Q361E, T366S, W367N, -368N, -372N, N397R, E401R, K404Q, S412A, R416T, L425I, L426I, -433S, N434T, G443A, E464K, K474R, Q479E; gp41: N42S, I84L, M118I, L130H, E148D, D232G, A243P, F263L, R277S, V318I, A325G, N331H; nef: G3S, I10V, K39R, E158N, E176D; p1: I5L; p17: G62S, D93E, I107L, T115M, D121G; p2: -10A, -12S; p24: M10P; p6: P5L, E29G, K33-, E34-, Y36-, P37-, T39I; pro: L63P; rev: S61T, A68P; tat: N24K, K29R, Q54H, S61G; vif: F39C, R41K, R47T, H48N, K50R, V51I, D61E, D101G, L109Q, I128R, R132S, I154V, G185D; vpr: Y15H, I84S, Q86R; vpu: A16G, T24A, D44E, E66D, P76-, D78V, V79G, D81N"}}, "children": [{"name": "AY900571", "node_attrs": {"div": 0.27465, "accession": "AY900571", "clade_membership": {"value": "other"}, "country": {"value": "CU"}, "date": {"value": 2003.0}, "Strain_name": {"value": "CB118"}, "LANL_subtype": {"value": "CRF23_BG"}}, "branch_attrs": {"mutations": {"nuc": ["A461C", "C558A", "A576G", "A653G", "G706A", "A711G", "T824C", "C988A", "G992A", "C1005G", "T1052C", "G1090A", "A1208G", "C1211T", "C1220T", "G1232A", "C1360G", "A1361T", "G1394A", "G1443A", "A1474G", "A1529T", "C1571A", "G1592T", "G1664A", "T1676C", "G1727A", "A1776C", "T2043C", "A2216T", "A2293G", "G2294A", "T2383C", "G2392T", "T2597C", "A2627T", "C2680T", "G2725A", "G2925A", "G2951A", "G3173A", "T3197C", "C3207T", "G3316A", "T4216C", "A4243G", "A4522G", "A4536G", "A4650C", "T4672A", "G4677A", "A4736G", "G4779A", "C4820T", "A4951G", "G5062T", "G5141C", "C5234G", "A5235T", "G5296A", "C5306T", "T5313C", "C5397T", "G5403C", "A5448G", "G5462T", "C5496A", "A5499G", "C5508A", "A5545G", "A5556G", "G5558A", "A5576T", "T5604G", "A5613C", "A5632G", "A5691T", "A5693T", "G5701C", "T5844G", "C5911T", "G5915T", "C5998T", "T6026C", "A6065C", "T6155C", "-6167A", "-6169G", "-6170G", "-6172A", "-6173G", "-6175C", "A6176T", "A6177G", "A6181G", "A6188T", "A6189G", "A6192C", "A6198C", "-6208A", "-6210T", "-6211G", "-6212G", "-6214A", "-6215C", "-6218T", "-6220A", "-6222C", "-6225C", "C6229T", "A6276G", "G6277T", "G6314A", "A6326G", "T6331G", "A6338G", "G6368A", "A6430G", "G6442A", "A6489G", "A6574G", "C6619T", "A6639G", "A6640C", "G6647A", "A6648C", "A6695T", "A6733T", "G6743A", "A6752G", "A6759T", "A6765T", "A6780C", "A6781C", "A6796G", "C6826A", "T6827C", "-6832G", "A6833C", "A6835C", "A6837G", "-6838A", "A6842-", "C6843-", "A6844C", "A6854G", "A6855G", "A6900T", "A6936G", "T6949C", "G6954-", "G6968A", "G6970T", "-6972G", "-6974A", "-6975A", "-6976T", "A7095G", "A7106G", "T7147G", "A7148C", "A7149C", "-7152A", "A7155G", "A7158G", "G7160A", "G7162T", "A7163-", "C7179T", "A7296G", "A7313C", "A7315G", "C7392T", "G7517C", "T7622A", "T7630A", "C7651T", "A7666G", "G7688C", "G7689A", "A7721C", "C7723A", "A7743G", "T7783C", "G7831A", "T7865A", "T7867G", "A7912C", "T8016C", "G8017C", "A8029G", "C8033A", "C8037T", "G8114T", "A8130G", "G8134C", "T8171C", "A8222G", "T8243G", "G8350A", "A8367-", "G8368-", "C8369-", "T8371-", "A8372-", "G8373-", "T8374-", "T8375-", "G8376-", "G8377-", "A8378-", "C8382G", "A8409G", "C8499G", "T8505C", "C8514G", "T8567C", "A8647G", "C8648G", "C8747T", "G8786A", "G8798T", "A8812G", "C8869A", "G8875A", "A8876G", "T8935G", "-8971G", "-8974G", "A9015T", "T9036-", "T9054G"], "INT": ["T124A", "N134D", "N254S"], "RT-p51": ["M41L", "D67N", "I178L", "R277K", "A286T", "A360T", "A371V"], "RT-p66": ["M41L", "D67N", "I178L", "R277K", "A286T", "A360T", "A371V"], "gp120": ["D21Y", "N71H", "N105K", "-106V", "-107D", "-108C", "-109E", "-111R", "-112N", "-113C", "-114T", "-115T", "-124A", "K141S", "V154M", "-158D", "-159K", "-162G", "K212R", "K262S", "E265T", "I281F", "D297N", "K300E", "Y302F", "E304V", "E309A", "I314M", "T330-", "N334G", "Q335P", "N349I", "E361G", "-371S", "N414S", "S418V", "E438-", "T439-", "P442L", "E481G"], "gp41": ["I4L", "M24I", "A30V", "V72L", "S107T", "D109E", "E119Q", "G129H", "H130Q", "N140Q", "Q147R", "M176I", "F188M", "E225G", "V238A", "L244I", "A245V", "V271L", "I307V", "W314G", "L340F"], "nef": ["S3N", "S9-", "V10-", "V11-", "G12-", "P14A", "T23A", "C55R", "L58V", "Y102W", "E152D", "N157S", "E177D", "R178K", "L198R"], "p17": ["E42D", "L75I", "T81A", "S124N", "S126G"], "p2": ["V7I", "S8P"], "p24": ["P86Q", "P92A", "S120N", "T210S"], "p6": ["-33Q", "-34D", "-36I", "L38-", "I39-"], "p7": ["E21D", "E42D"], "pro": ["I82T"], "rev": ["K14R", "A15T", "I21F", "E57Q", "T61A", "A62D", "S89I", "G96Q", "S107P", "V108A"], "tat": ["E9D", "R29M", "R57G", "G61D", "N67I"], "vif": ["N22H", "M29K", "V31I", "V65I", "N122S", "R159I"], "vpr": ["E13Q", "Q44V", "I70T"], "vpu": ["Q2H", "I9V", "Q29L", "E32Q", "D60E", "E62A", "E63A", "V69D", "D70F", "-71D", "-72H"]}, "labels": {"aa": "INT: T124A, N134D, N254S; RT-p51: M41L, D67N, I178L, R277K, A286T, A360T, A371V; RT-p66: M41L, D67N, I178L, R277K, A286T, A360T, A371V; gp120: D21Y, N71H, N105K, -106V, -107D, -108C, -109E, -111R, -112N, -113C, -114T, -115T, -124A, K141S, V154M, -158D, -159K, -162G, K212R, K262S, E265T, I281F, D297N, K300E, Y302F, E304V, E309A, I314M, T330-, N334G, Q335P, N349I, E361G, -371S, N414S, S418V, E438-, T439-, P442L, E481G; gp41: I4L, M24I, A30V, V72L, S107T, D109E, E119Q, G129H, H130Q, N140Q, Q147R, M176I, F188M, E225G, V238A, L244I, A245V, V271L, I307V, W314G, L340F; nef: S3N, S9-, V10-, V11-, G12-, P14A, T23A, C55R, L58V, Y102W, E152D, N157S, E177D, R178K, L198R; p17: E42D, L75I, T81A, S124N, S126G; p2: V7I, S8P; p24: P86Q, P92A, S120N, T210S; p6: -33Q, -34D, -36I, L38-, I39-; p7: E21D, E42D; pro: I82T; rev: K14R, A15T, I21F, E57Q, T61A, A62D, S89I, G96Q, S107P, V108A; tat: E9D, R29M, R57G, G61D, N67I; vif: N22H, M29K, V31I, V65I, N122S, R159I; vpr: E13Q, Q44V, I70T; vpu: Q2H, I9V, Q29L, E32Q, D60E, E62A, E63A, V69D, D70F, -71D, -72H"}}}, {"name": "AY900572", "node_attrs": {"div": 0.27629, "accession": "AY900572", "clade_membership": {"value": "other"}, "country": {"value": "CU"}, "date": {"value": 2003.0}, "Strain_name": {"value": "CB347"}, "LANL_subtype": {"value": "CRF23_BG"}}, "branch_attrs": {"mutations": {"nuc": ["C207T", "A368G", "T473C", "A491G", "A492T", "A499G", "G524A", "A540C", "A566C", "T571A", "G607A", "G695A", "G762A", "T851C", "A899G", "A914G", "A980G", "C1098T", "C1137A", "T1229C", "G1302A", "C1330A", "G1339A", "C1351A", "C1446T", "G1449T", "A1464C", "C1692A", "A1740C", "C1768A", "G1772C", "T1978G", "A2203C", "G2428A", "G2459A", "T2499G", "T2536C", "A2692G", "T2758C", "T2776C", "A2839G", "C2960T", "T3045C", "G3264A", "A3268G", "C3271T", "A3280G", "C3358T", "C3577T", "G3756A", "A3768G", "A3781G", "G3808T", "A3845G", "T3856C", "C3857A", "G3859A", "G4145A", "G4175A", "A4303G", "A4376G", "C4771A", "A4774T", "A4775G", "A4781G", "T5102C", "A5159G", "T5194C", "C5213A", "T5239C", "C5248T", "A5291C", "C5303A", "A5305G", "T5357G", "C5359T", "G5368C", "G5370A", "A5376G", "T5424C", "A5533C", "A5601C", "A5616G", "A5622G", "A5644G", "C5734A", "C5804T", "G5864A", "A5865G", "A5868G", "T5923C", "G5938T", "G5962A", "A6159C", "A6168-", "T6171-", "A6174-", "A6180C", "T6187C", "C6190T", "A6191T", "A6192G", "T6193C", "T6199A", "-6200G", "-6201G", "-6202A", "-6203G", "-6204T", "-6205C", "-6206A", "-6207A", "-6208T", "-6210G", "-6211C", "-6212A", "-6214T", "-6215G", "-6218G", "-6220C", "-6222A", "A6223C", "-6225A", "A6251G", "A6266C", "G6267A", "A6281C", "T6287C", "T6295C", "A6303G", "G6323A", "A6333G", "A6335G", "A6336C", "G6339A", "A6371C", "T6436G", "A6462C", "T6652A", "C6693G", "A6718G", "A6785G", "C6792T", "A6798T", "A6807G", "C6824A", "A6825G", "G6830A", "-6832C", "-6838C", "A6840T", "A6854C", "T6863A", "T6925C", "-6953A", "-6958T", "T6967G", "-6972A", "C7020T", "G7026A", "A7042G", "T7107G", "A7123G", "T7141C", "T7150C", "-7152G", "C7153T", "A7155C", "A7161G", "-7164C", "-7165T", "A7231G", "A7268G", "T7325C", "C7328T", "A7348C", "A7375G", "A7376G", "C7463A", "A7532G", "G7604A", "C7625T", "T7626A", "G7628C", "A7655G", "C7658G", "C7690T", "A7693C", "A7706C", "G7712C", "A7741G", "A7782G", "G7790A", "T7796A", "A7799C", "T7825C", "G7868A", "T7879C", "T7929A", "G7977A", "G7995A", "A7996C", "A8006G", "T8007G", "G8019T", "C8080A", "T8159G", "C8167T", "G8234A", "T8235C", "C8242T", "A8273G", "T8290C", "A8295G", "A8308G", "T8321C", "-8370G", "G8388A", "A8400C", "G8402A", "A8435G", "C8455A", "G8490A", "C8494A", "T8568C", "A8663G", "G8678A", "T8740C", "A8746T", "A8750C", "C8771T", "G8784A", "G8793A", "C8794G", "C8828T", "C8840T", "C8873A", "G8888A", "A8970-", "T8972-", "T8973-", "C8975-", "T8976-", "A8977-", "C8978-", "A8979-"], "INT": ["E11D", "S24G", "L28I", "I201V"], "RT-p51": ["E36D", "E122K", "I135R", "V317A", "R390K"], "RT-p66": ["E36D", "E122K", "I135R", "V317A", "R390K", "S554N", "K558R"], "gp120": ["D4S", "N5S", "N102T", "N105D", "T110-", "D125-", "I133V", "R138Q", "K143Q", "Y145H", "K150R", "N160-", "N161-", "T172A", "I173L", "K203T", "T280R", "D294E", "N311D", "T313M", "Q315L", "K318R", "F333T", "N334F", "S337P", "N367S", "S370K", "-371G", "P389L", "R391K", "S418R", "E436G", "K472E"], "gp41": ["F8L", "L9F", "T25A", "L54M", "K77E", "A101T", "L108Y", "D109H", "I118V", "I135L", "E137Q", "N160S", "D163N", "S165T", "N166H", "A189T", "L209H", "R231N", "I235G", "S239I", "S277L", "W286G", "V311T", "R324G", "H331R"], "nef": ["V16I", "M20L", "A38D", "A50T", "T51N", "A53P", "I133T", "Y135F", "V148M", "A151R", "D176A", "M182I"], "p17": ["T53S", "E55G", "K69Q", "F79Y", "R91K"], "p2": ["G9C", "M14L"], "p24": ["V11I", "P123S", "L136M", "V191I", "T200N", "R203K", "P207Q"], "p6": ["L5I", "I21L", "-26Q", "K27G", "G29N", "P30E", "E32D", "L35-"], "p7": ["R3K"], "pro": ["D60E"], "rev": ["H53R", "E57D", "L78I", "V104G"], "tat": ["K40N", "K53Q", "L74I"], "vif": ["A62D", "K63M", "D185E"], "vpr": ["T19A", "P37T", "I63L", "L67M", "S84R", "P85L", "R88T", "G89R", "N91D"], "vpu": ["I13V", "L43I", "L61T", "V65A", "D66V", "M67L", "G68-", "-71M", "-72G", "-73D", "-74F", "-75D", "-76H"]}, "labels": {"aa": "INT: E11D, S24G, L28I, I201V; RT-p51: E36D, E122K, I135R, V317A, R390K; RT-p66: E36D, E122K, I135R, V317A, R390K, S554N, K558R; gp120: D4S, N5S, N102T, N105D, T110-, D125-, I133V, R138Q, K143Q, Y145H, K150R, N160-, N161-, T172A, I173L, K203T, T280R, D294E, N311D, T313M, Q315L, K318R, F333T, N334F, S337P, N367S, S370K, -371G, P389L, R391K, S418R, E436G, K472E; gp41: F8L, L9F, T25A, L54M, K77E, A101T, L108Y, D109H, I118V, I135L, E137Q, N160S, D163N, S165T, N166H, A189T, L209H, R231N, I235G, S239I, S277L, W286G, V311T, R324G, H331R; nef: V16I, M20L, A38D, A50T, T51N, A53P, I133T, Y135F, V148M, A151R, D176A, M182I; p17: T53S, E55G, K69Q, F79Y, R91K; p2: G9C, M14L; p24: V11I, P123S, L136M, V191I, T200N, R203K, P207Q; p6: L5I, I21L, -26Q, K27G, G29N, P30E, E32D, L35-; p7: R3K; pro: D60E; rev: H53R, E57D, L78I, V104G; tat: K40N, K53Q, L74I; vif: A62D, K63M, D185E; vpr: T19A, P37T, I63L, L67M, S84R, P85L, R88T, G89R, N91D; vpu: I13V, L43I, L61T, V65A, D66V, M67L, G68-, -71M, -72G, -73D, -74F, -75D, -76H"}}}]}]}, {"name": "other_NODE_0000051", "node_attrs": {"div": 0.19809999999999997, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A665G", "A697C", "G1848A", "A2057C", "T2071C", "G2273A", "C2296T", "C2356T", "C2420T", "A2578G", "T2788G", "G3529A", "G3553A", "A3595G", "G3631A", "T3898C", "A3952G", "G4175A", "G4186A", "G4582A", "C4665T", "G4677A", "G4696A", "G5086A", "G5140A", "T5162C", "T5221C", "T5327C", "A5336C", "T5357A", "A5372G", "C5398A", "T5415G", "A5426G", "A5433G", "A5444C", "A5446C", "A5447C", "G5482A", "T5484G", "A5499G", "C5511T", "G5546C", "A5548G", "A5555C", "A5556T", "A5613G", "T5614G", "G5653T", "A5656T", "C5679T", "G5729A", "T5787A", "C5831A", "T5843G", "G5856A", "G5954A", "-6200A", "T6457A", "G6577T", "A6684G", "G6819A", "-6835T", "T6863G", "-6995G", "C7087T", "C7658G", "G7688C", "G7689A", "C7690A", "A7885C", "T7921G", "G7942A", "G7944C", "C7949G", "A7962G", "G7965A", "A7992G", "G7997A", "A7998C", "C8005G", "C8080A", "C8093G", "C8120A", "T8121C", "G8144A", "G8145T", "T8155C", "T8159G", "T8164C", "C8167G", "C8168G", "A8172G", "G8173T", "T8182A", "G8212A", "C8293T", "G8329A", "T8414G", "C8499G", "A8531G", "C8666A", "A8795G", "C8948T", "T9060A", "T9073C"], "RT-p51": ["V60I"], "RT-p66": ["V60I"], "gp120": ["S1N", "-112T", "N201R", "E241D", "K277R", "R322K"], "gp41": ["G129Q", "F206L", "R214T", "P216A", "E220G", "G221E", "E225G", "D230G", "D232T", "L264V", "L273T", "R276H", "G281I", "W286G", "L289V", "Q290C", "I321V"], "nef": ["R178G"], "p17": ["D121A"], "p6": ["T39A"], "pro": ["G17E"], "rev": ["E11Q", "K14L", "E32N", "T34S", "R50N", "H53D", "L78I", "T82R", "T91N", "S103P", "V104G", "S106P", "S107G", "V109L", "S112T"], "tat": ["L8I", "H13Q", "Q17R", "A21P", "N23T", "N24S", "R57T", "T58A", "Q60P", "D64N", "R78Q", "G79R", "D80E", "K85E", "E86K"], "vif": ["H27Y", "G185E"], "vpu": ["S3A", "A7S", "I17L", "D40E", "R41K", "D78V", "V79G"]}, "labels": {"aa": "RT-p51: V60I; RT-p66: V60I; gp120: S1N, -112T, N201R, E241D, K277R, R322K; gp41: G129Q, F206L, R214T, P216A, E220G, G221E, E225G, D230G, D232T, L264V, L273T, R276H, G281I, W286G, L289V, Q290C, I321V; nef: R178G; p17: D121A; p6: T39A; pro: G17E; rev: E11Q, K14L, E32N, T34S, R50N, H53D, L78I, T82R, T91N, S103P, V104G, S106P, S107G, V109L, S112T; tat: L8I, H13Q, Q17R, A21P, N23T, N24S, R57T, T58A, Q60P, D64N, R78Q, G79R, D80E, K85E, E86K; vif: H27Y, G185E; vpu: S3A, A7S, I17L, D40E, R41K, D78V, V79G"}}, "children": [{"name": "MH479275", "node_attrs": {"div": 0.26242, "accession": "MH479275", "clade_membership": {"value": "other"}, "country": {"value": "FR"}, "date": {"value": 2009.0}, "Strain_name": {"value": "A_Bordeaux"}, "LANL_subtype": {"value": "CRF98_06B"}}, "branch_attrs": {"mutations": {"nuc": ["G256A", "A271G", "-304A", "-305C", "G317A", "A347G", "G378A", "C379A", "A387G", "A388C", "A389G", "C426A", "T434C", "C435T", "C467T", "G480A", "A512G", "G518A", "C531T", "A566C", "G614C", "T636C", "A678G", "G683A", "C713T", "-714A", "A715G", "-716T", "T718C", "C722T", "A730T", "T734A", "A764G", "T767C", "G770A", "A774G", "A776G", "T782A", "G785A", "G791A", "A806G", "T824C", "A836G", "T851C", "T861G", "A866C", "C872T", "A881G", "A891G", "A899G", "G911A", "T936C", "T978A", "T979C", "A1002G", "C1060A", "A1067G", "T1094C", "A1101G", "G1139A", "G1173A", "T1174C", "C1175T", "G1184A", "A1193G", "T1214C", "A1217G", "G1256A", "T1271A", "A1278G", "A1279G", "C1299T", "G1313A", "T1316C", "G1339A", "G1355A", "A1379C", "G1388A", "C1406T", "G1418A", "G1424A", "T1439C", "A1442T", "C1446T", "A1447C", "G1452A", "-1455G", "-1456C", "-1457A", "-1459C", "G1486A", "C1491A", "C1492T", "A1493G", "T1501G", "-1503A", "-1504T", "-1505T", "A1526G", "A1532G", "C1535T", "C1541T", "C1610T", "C1613T", "T1616A", "A1642G", "T1646C", "A1656C", "G1661A", "G1664A", "C1681T", "A1700G", "G1720T", "G1733A", "T1741A", "C1761G", "G1766A", "A1770-", "A1771-", "G1772-", "G1773-", "A1774-", "A1775-", "A1819G", "A1837G", "A1849G", "G1901A", "A1932G", "A1933G", "T1954C", "G1968A", "G1981A", "C1985T", "T1986C", "A1993G", "A2038C", "C2044T", "A2059C", "A2069G", "T2095G", "T2101A", "A2113G", "A2154G", "G2155A", "A2176G", "A2182G", "C2263T", "A2293G", "T2315C", "A2341G", "A2380T", "G2392A", "A2395G", "A2419G", "C2464T", "A2470G", "C2485T", "G2539A", "G2567T", "A2626C", "T2672C", "G2693A", "G2705A", "T2708C", "A2716G", "G2728A", "A2752G", "T2776C", "G2902A", "T2908C", "C2909G", "G2926A", "G2947A", "T2983G", "G2984A", "C2985G", "A2995G", "T2996C", "T3002C", "G3004A", "C3013T", "C3067G", "G3093A", "A3096T", "A3116G", "G3127A", "G3154A", "A3196G", "A3217G", "A3224C", "C3225A", "A3249G", "A3283G", "A3292C", "A3293G", "G3316A", "C3322T", "A3334G", "A3364G", "A3385G", "C3394T", "G3442A", "T3445G", "G3473A", "G3477A", "G3494A", "C3498G", "C3499T", "A3502G", "T3526A", "C3542A", "T3550C", "T3551C", "C3610T", "C3649T", "A3651G", "G3664A", "G3667A", "T3695G", "G3718A", "A3755G", "G3766A", "C3787A", "A3814G", "C3826T", "A3838T", "G3846A", "G3916A", "C3922T", "T3962A", "T3970C", "T3976C", "T3991A", "C3995A", "G3997A", "T4018C", "A4076C", "A4111G", "C4129T", "C4146G", "G4156A", "G4264A", "A4279G", "G4294A", "T4321C", "C4471T", "A4543C", "G4642A", "A4643T", "C4652A", "T4674C", "T4676C", "T4679G", "G4695A", "T4701A", "T4703G", "A4721T", "C4724T", "G4726A", "G4727C", "T4769A", "A4778G", "A4782G", "A4786C", "A4804T", "C4857A", "G4859A", "A4860G", "A4862G", "G4870A", "A4882G", "T4919C", "G4949A", "A4950C", "A4952T", "A4966G", "T4967A", "C4978A", "A4988T", "T5028C", "A5042C", "T5043C", "C5050A", "C5056A", "A5057G", "A5085C", "G5087A", "A5094G", "C5095T", "A5121G", "G5176A", "G5212A", "G5225A", "G5226A", "C5234G", "C5237T", "A5278G", "T5292C", "T5339C", "C5358A", "C5359G", "C5384T", "G5386A", "A5431G", "A5461G", "A5482C", "G5484A", "C5496A", "A5545G", "C5559G", "G5561A", "G5566A", "C5611A", "C5654T", "A5667T", "T5690G", "A5691T", "A5693T", "G5701A", "A5716G", "T5739A", "G5741A", "A5746G", "G5747C", "A5750C", "G5783A", "A5790G", "A5796C", "-5824A", "-5861A", "C5869A", "A5911G", "C5920T", "C5974T", "T5980C", "C6024G", "T6046C", "A6059C", "C6097T", "G6133A", "C6139T", "C6160T", "T6163C", "-6167G", "-6169C", "-6170T", "-6172T", "-6173A", "-6175A", "C6184T", "A6186G", "G6195A", "-6201G", "-6202T", "-6203G", "-6204A", "-6205G", "-6206A", "-6207G", "-6208A", "-6209A", "-6210T", "-6211A", "-6218G", "-6219A", "-6220G", "-6222G", "A6223G", "-6225G", "-6226A", "G6260A", "A6261G", "A6262T", "T6264G", "A6270G", "A6275T", "A6276T", "A6278C", "T6325A", "A6333G", "A6335T", "A6349G", "A6350G", "A6352G", "A6354G", "T6361C", "C6369T", "A6430G", "T6438A", "A6489C", "A6525G", "G6533A", "A6535C", "A6565G", "A6581G", "C6591A", "G6593A", "T6599G", "A6604G", "G6605A", "C6618T", "T6634G", "C6661A", "-6689A", "-6693C", "-6697G", "C6713A", "A6714G", "T6719G", "C6721T", "A6742G", "G6743A", "G6767C", "G6771A", "A6773G", "T6787A", "A6790C", "C6797A", "A6798G", "C6826A", "-6830A", "-6831G", "-6832G", "A6837-", "T6860A", "G6863A", "T6876C", "A6881G", "A6884G", "C6885T", "C6888T", "A6889G", "T6892C", "G6894A", "T6895C", "T6901C", "A6910G", "T6922C", "T6932A", "G6935C", "-6955G", "-6956A", "-6957T", "-6958T", "-6959T", "-6960G", "-6961G", "-6963A", "-6964T", "-6971A", "-6972G", "-6973T", "-6974A", "-6975C", "-6976T", "-6977G", "-6978A", "-6979A", "-6980G", "-6981A", "-6982G", "-6983T", "-6984C", "-6985C", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "-6992A", "-6993A", "-6994T", "-6996A", "-6997T", "-6998A", "-6999G", "-7000T", "-7009A", "A7010C", "T7047G", "C7064A", "G7088A", "C7089G", "A7090T", "A7094C", "A7106T", "C7107T", "C7114T", "A7123G", "A7126G", "C7156T", "-7164G", "-7165C", "G7182C", "A7239G", "C7250T", "A7398T", "T7411A", "T7433C", "A7447T", "T7489C", "G7508A", "A7549G", "C7561G", "A7570G", "C7579T", "A7589G", "A7590C", "A7627G", "G7628A", "A7633G", "A7669G", "A7677G", "T7691G", "A7701C", "G7712A", "A7714T", "A7722G", "G7729A", "C7755A", "C7762T", "T7774C", "G7807A", "T7813C", "G7831A", "T7912C", "A7937C", "G7947A", "G7957A", "C8047T", "G8055A", "G8070C", "A8076G", "T8173C", "G8216A", "A8219G", "G8255T", "T8277C", "T8281A", "T8290A", "A8294C", "C8320G", "A8323G", "T8337A", "C8369G", "A8370G", "A8372G", "G8385A", "G8387T", "A8409G", "C8412G", "C8413A", "C8425T", "A8426T", "A8429G", "A8432G", "A8446G", "T8450C", "T8451C", "A8453G", "T8456A", "G8459A", "A8475T", "C8477T", "G8479A", "G8487C", "T8495C", "C8514T", "G8516A", "A8519G", "G8528A", "A8540G", "C8543T", "T8585C", "T8591A", "T8594G", "T8595C", "T8597A", "C8603T", "T8608A", "T8636A", "T8646C", "A8652C", "A8653G", "G8654A", "T8687C", "C8688A", "C8747T", "T8789G", "C8791A", "G8796A", "A8797G", "G8805A", "C8809A", "C8812A", "A8827T", "G8830A", "C8832T", "T8847A", "A8851T", "G8864T", "T8867C", "G8868C", "A8870G", "A8874G", "G8882A", "A8886G", "T8887A", "C8913T", "A8916C", "G8917A", "A8918T", "A8924G", "T8947A", "C8951T", "A8954G", "C8966T", "A8967C", "A8970G", "-8971A", "-8974T", "T8993A", "C9028T", "A9042G", "T9095G"], "INT": ["S24N", "L63I", "L74I", "I101L", "T124G", "E256D"], "RT-p51": ["K20R", "A158S", "E177D", "A200T", "E204K", "Q245E", "P272A", "A297R", "D324E", "G333E", "Q334L", "I341V", "S359G", "T377Q", "K385R", "E399D", "T400A"], "RT-p66": ["K20R", "A158S", "E177D", "A200T", "E204K", "Q245E", "P272A", "A297R", "D324E", "G333E", "Q334L", "I341V", "S359G", "T377Q", "K385R", "E399D", "T400A", "D460N", "R461K", "V467I", "S468C", "H483N", "N519S", "S534A", "S554A"], "gp120": ["N5K", "D34N", "P57G", "K69Q", "N105D", "-106F", "-107K", "-109D", "-111S", "-114N", "-115S", "-116S", "-117E", "-118R", "-119I", "-122E", "-123R", "-124G", "E136S", "I137R", "D139G", "K141L", "K142Q", "D157T", "N160S", "N161Y", "I166V", "N167S", "T172V", "F195Y", "K212T", "K224R", "V227I", "I243V", "S246Y", "E247K", "L249V", "D251N", "T255I", "H280P", "I281M", "Q287R", "F289V", "D297N", "V305L", "S306N", "R307G", "N311K", "K315R", "-326R", "S336T", "S337T", "I343V", "T344V", "S347N", "S360T", "-368I", "-369W", "S370N", "-373S", "-374T", "-375E", "-376E", "-377S", "-378N", "-379N", "-380N", "-381D", "-382S", "I386L", "M398R", "N414Q", "S418L", "T437S", "G443A", "K462R"], "gp41": ["Q32L", "V69I", "N96A", "D109N", "N125S", "L130V", "N133T", "E137N", "N140S", "A151E", "M176I", "G215E", "S251N", "S256T", "H258R", "D305N", "T306A", "V318F", "F326L", "F329L", "N331H", "L345Q"], "nef": ["S9R", "I10V", "A15T", "T23A", "P24E", "A28V", "Q35R", "S45C", "S46N", "A49P", "F85L", "D98E", "Y102H", "K104R", "H116N", "D149E", "P150Q", "E152R", "E155K", "A156D", "N162I", "S163N", "C169S", "Q170L", "E174D", "E176P", "M182E", "R191F", "R192H", "I194M"], "p1": ["K4R"], "p17": ["A15K", "K18A", "L31M", "G49S", "M61I", "P66S", "T115A", "-127S", "V128A", "Y132F"], "p2": ["Q6H", "Q8S", "-10T", "-12T"], "p24": ["I15V", "S44A", "E45D", "M54V", "L83T", "I91V", "T110N", "I124V", "V148T", "N183G", "R203K"], "p6": ["P1L", "S14I", "I21K", "Q28E", "K31-", "E32-", "N47S"], "p7": ["R3K", "R7K", "Q9M", "I12S", "-13I"], "pro": ["D35N", "K45R", "R57K", "L63S", "T91A", "F99L"], "rev": ["A15G", "V16I", "K30T", "A37T", "P67S", "Q74H"], "tat": ["P3L", "V4I", "K19E", "S24P", "K29E", "V36L", "T57A", "S61G", "S62N", "Q76H", "E80K", "G83D"], "vif": ["R19N", "N22K", "Y30H", "V31M", "G37N", "F39M", "E45D", "R47N", "D61E", "I66V", "K67T", "H73L", "K92E", "S95N", "D99G", "K122H", "H127R", "P131H", "E134D", "K151T", "T155K", "T157K", "R167Q", "T170V", "K179E"], "vpr": ["E6G", "G41N", "Q44E", "H45Y", "I63T", "Q77H", "P85R", "S94N"], "vpu": ["Q2K", "A16F", "I28S", "Q29L", "K37E", "D44E", "R45K", "R47A", "E48A", "G59E", "D60E", "E62A", "E63A", "-69N", "-70F", "-71D"]}, "labels": {"aa": "INT: S24N, L63I, L74I, I101L, T124G, E256D; RT-p51: K20R, A158S, E177D, A200T, E204K, Q245E, P272A, A297R, D324E, G333E, Q334L, I341V, S359G, T377Q, K385R, E399D, T400A; RT-p66: K20R, A158S, E177D, A200T, E204K, Q245E, P272A, A297R, D324E, G333E, Q334L, I341V, S359G, T377Q, K385R, E399D, T400A, D460N, R461K, V467I, S468C, H483N, N519S, S534A, S554A; gp120: N5K, D34N, P57G, K69Q, N105D, -106F, -107K, -109D, -111S, -114N, -115S, -116S, -117E, -118R, -119I, -122E, -123R, -124G, E136S, I137R, D139G, K141L, K142Q, D157T, N160S, N161Y, I166V, N167S, T172V, F195Y, K212T, K224R, V227I, I243V, S246Y, E247K, L249V, D251N, T255I, H280P, I281M, Q287R, F289V, D297N, V305L, S306N, R307G, N311K, K315R, -326R, S336T, S337T, I343V, T344V, S347N, S360T, -368I, -369W, S370N, -373S, -374T, -375E, -376E, -377S, -378N, -379N, -380N, -381D, -382S, I386L, M398R, N414Q, S418L, T437S, G443A, K462R; gp41: Q32L, V69I, N96A, D109N, N125S, L130V, N133T, E137N, N140S, A151E, M176I, G215E, S251N, S256T, H258R, D305N, T306A, V318F, F326L, F329L, N331H, L345Q; nef: S9R, I10V, A15T, T23A, P24E, A28V, Q35R, S45C, S46N, A49P, F85L, D98E, Y102H, K104R, H116N, D149E, P150Q, E152R, E155K, A156D, N162I, S163N, C169S, Q170L, E174D, E176P, M182E, R191F, R192H, I194M; p1: K4R; p17: A15K, K18A, L31M, G49S, M61I, P66S, T115A, -127S, V128A, Y132F; p2: Q6H, Q8S, -10T, -12T; p24: I15V, S44A, E45D, M54V, L83T, I91V, T110N, I124V, V148T, N183G, R203K; p6: P1L, S14I, I21K, Q28E, K31-, E32-, N47S; p7: R3K, R7K, Q9M, I12S, -13I; pro: D35N, K45R, R57K, L63S, T91A, F99L; rev: A15G, V16I, K30T, A37T, P67S, Q74H; tat: P3L, V4I, K19E, S24P, K29E, V36L, T57A, S61G, S62N, Q76H, E80K, G83D; vif: R19N, N22K, Y30H, V31M, G37N, F39M, E45D, R47N, D61E, I66V, K67T, H73L, K92E, S95N, D99G, K122H, H127R, P131H, E134D, K151T, T155K, T157K, R167Q, T170V, K179E; vpr: E6G, G41N, Q44E, H45Y, I63T, Q77H, P85R, S94N; vpu: Q2K, A16F, I28S, Q29L, K37E, D44E, R45K, R47A, E48A, G59E, D60E, E62A, E63A, -69N, -70F, -71D"}}}, {"name": "other_NODE_0000052", "node_attrs": {"div": 0.22482999999999997, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T12C", "C362T", "A541G", "A715-", "G717-", "T718-", "C719-", "G762A", "G771T", "A803G", "A866G", "T890C", "A1247G", "C1292A", "T1296C", "-1459G", "A1657G", "T2062C", "C2467T", "C2488T", "C2575T", "T2605C", "A2613C", "T2632G", "G2656A", "A2707G", "G2722A", "T2806C", "A2818G", "C2863T", "G2872A", "T2885C", "T2944C", "A2968C", "G2969A", "A3010G", "G3099A", "G3170T", "G3171C", "A3340G", "T3359C", "A3448G", "T3449C", "A3463G", "A3490G", "T3497C", "C3508G", "T3668C", "C3756G", "G3796A", "A3808G", "A3816G", "G3866A", "C4195A", "A4228G", "T4288C", "A4391T", "C4396T", "T4826C", "A4858T", "T4914C", "T4943C", "C5038A", "A5173G", "T5251C", "C5491T", "G5538A", "T5641C", "G5848A", "C5851T", "T5860C", "-5861T", "G5864A", "A5866G", "A5867G", "T5870C", "A5896G", "T5901C", "A5906G", "A5911T", "A5915G", "C5916A", "C5917T", "C5922T", "A5938T", "A5955G", "A5959T", "G5962A", "G5963A", "T5964A", "A5965G", "C5989T", "G6023A", "A6025T", "G6037A", "A6065C", "C6110G", "T6134C", "A6142T", "A6180C", "-6201A", "-6202C", "-6222A", "A6234C", "G6277A", "A6292G", "T6298C", "A6322T", "C6340T", "A6362G", "G6368A", "C6375A", "C6397T", "G6403A", "T6409C", "C6427T", "C6446T", "G6466T", "C6499T", "A6532G", "C6545T", "T6551C", "C6563T", "A6576G", "G6578A", "T6598C", "T6613C", "A6628G", "G6638C", "A6654C", "T6655A", "A6668T", "C6670T", "T6688-", "T6690-", "A6691-", "C6692-", "-6697A", "A6718G", "A6733T", "A6757T", "A6781T", "T6793G", "A6799G", "A6805G", "G6806A", "C6807G", "T6808G", "A6810C", "T6815C", "A6825T", "-6836A", "A6842-", "C6843-", "A6844-", "T6849C", "A6858C", "C6862T", "A6950T", "T6952A", "C7024T", "A7044G", "C7045G", "G7055A", "A7096C", "G7101C", "T7144G", "A7225G", "G7244A", "G7256A", "A7275G", "G7285A", "C7289G", "A7290G", "A7297G", "G7309T", "A7313C", "A7315G", "G7339A", "G7343A", "T7411C", "G7426A", "A7428G", "G7441A", "A7583C", "T7597C", "T7622A", "C7625T", "A7627T", "G7660A", "T7691C", "T7703C", "A7765G", "A7818G", "C8296T", "G8317A", "G8402A", "T8411C", "A8441G", "A8503C", "C8607T", "C8699T", "A8777G", "G8807A", "A8829T", "T8843C", "G8846A", "A8859G", "T8860C", "C8869A", "G8873A", "C8904T", "G8905C", "T8914G", "C8934A", "T8935A", "C9078T", "T9097C", "C9108T", "G9128A"], "INT": ["K14R", "V31I", "T124A", "T206S"], "RT-p51": ["E291D", "V292I", "G335D"], "RT-p66": ["E291D", "V292I", "G335D", "D471E"], "gp120": ["T3S", "E4K", "N5D", "V16A", "K18E", "E19D", "T21D", "T23I", "D34S", "V37K", "N71H", "Q86E", "-106V", "-107T", "-109T", "-111V", "S162-", "T174K", "K204N", "V242I", "E262Q", "N267T", "N272Y", "T313M", "A318R", "Q324S", "I332T", "Q335P", "S337A", "P341L", "M345T", "W367-", "N397R", "E401K", "K404Q", "S412A", "R416T", "S418T", "E464K", "V468I", "K474R", "Q479G"], "gp41": ["I4L", "A14T", "N42S", "T94P", "S107T", "L108F", "H212N"], "nef": ["M20I", "E38D", "H89F", "E151K", "S163C", "M168I", "R188S", "L198K"], "p1": ["H9S"], "p17": ["K69R", "S126-", "V128-"], "p24": ["A14S", "D187E"], "rev": ["S8N"], "tat": ["N7K", "V36M", "K40N"], "vif": ["K91L", "Y110H"], "vpu": ["K32E", "L61T", "E66T", "G68M", "-70E", "-71M", "D81N"]}, "labels": {"aa": "INT: K14R, V31I, T124A, T206S; RT-p51: E291D, V292I, G335D; RT-p66: E291D, V292I, G335D, D471E; gp120: T3S, E4K, N5D, V16A, K18E, E19D, T21D, T23I, D34S, V37K, N71H, Q86E, -106V, -107T, -109T, -111V, S162-, T174K, K204N, V242I, E262Q, N267T, N272Y, T313M, A318R, Q324S, I332T, Q335P, S337A, P341L, M345T, W367-, N397R, E401K, K404Q, S412A, R416T, S418T, E464K, V468I, K474R, Q479G; gp41: I4L, A14T, N42S, T94P, S107T, L108F, H212N; nef: M20I, E38D, H89F, E151K, S163C, M168I, R188S, L198K; p1: H9S; p17: K69R, S126-, V128-; p24: A14S, D187E; rev: S8N; tat: N7K, V36M, K40N; vif: K91L, Y110H; vpu: K32E, L61T, E66T, G68M, -70E, -71M, D81N"}}, "children": [{"name": "other_NODE_0000053", "node_attrs": {"div": 0.26349999999999996, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G52A", "C96A", "C150A", "A217-", "G256A", "A265G", "C379A", "T434C", "C435A", "A470G", "A516G", "G612A", "G614A", "A618G", "A619C", "G693A", "C722-", "T734C", "A899G", "A938G", "A965T", "C974T", "T988C", "T992G", "A1002T", "C1013G", "T1094C", "A1115C", "G1139A", "A1151G", "T1172G", "C1175T", "T1214C", "T1245C", "G1247T", "A1277G", "G1313A", "G1328A", "T1385C", "T1427C", "T1444C", "C1478T", "A1595C", "A1712T", "G1725A", "G1732A", "T1741C", "C1745A", "-1746G", "-1747C", "-1748C", "C1755T", "A1804G", "C1873T", "C1903T", "T1986A", "A1993G", "T2101A", "A2154G", "A2182G", "A2190G", "G2224A", "A2293G", "A2344G", "G2389T", "A2398G", "T2449C", "C2452T", "G2459A", "G2539A", "G2686A", "G2710A", "T2770C", "G2830A", "A2839C", "A2842G", "C2845A", "A2875G", "G2878A", "G2902A", "C2953A", "A2955G", "A2977G", "G3016A", "C3023T", "A3031G", "A3037G", "A3043G", "G3046A", "T3049C", "A3097T", "T3118A", "A3124G", "T3131C", "T3132A", "T3139C", "G3166A", "G3168A", "G3205A", "C3225T", "A3239G", "A3286G", "A3292G", "G3307A", "G3316A", "T3368C", "G3439A", "G3442A", "C3449A", "A3503T", "G3508A", "T3526A", "C3542A", "G3643A", "A3682G", "C3691T", "T3779C", "A3838C", "G3846A", "T3904C", "T3962A", "T3970C", "T3976C", "A3982G", "T3991A", "C3995A", "G3997A", "C4021T", "C4129T", "G4156A", "C4180T", "A4243G", "A4531G", "T4585G", "G4642A", "A4643T", "C4652A", "T4667C", "T4674C", "G4695A", "A4721C", "A4725C", "G4726A", "G4727C", "G4737A", "G4766A", "G4767A", "A4768G", "A4773G", "A4786C", "G4802A", "C4803A", "C4820A", "T4832C", "C4857T", "G4870A", "C4871A", "A4874C", "G4878A", "G4887A", "A4888G", "C4889T", "A4892G", "C4911A", "T4919C", "A4997G", "A5024G", "T5028C", "A5042C", "C5050A", "C5056A", "A5057G", "T5073C", "A5085C", "G5087A", "A5094G", "C5095T", "A5112G", "T5147C", "A5187G", "G5199A", "G5225A", "A5278G", "T5281C", "C5333T", "C5334A", "G5363A", "G5382A", "C5397A", "G5403A", "T5439G", "C5451T", "T5490C", "C5584T", "G5647A", "A5652T", "C5655A", "T5688A", "A5717G", "G5730A", "A5781G", "A5787C", "T5788A", "T5789C", "C5792-", "A5793-", "C5795-", "C5797-", "T5799-", "A5806C", "G5810-", "G5811-", "-5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824A", "C5884T", "C5924T", "T5951C", "A6023C", "T6096A", "C6097A", "A6158C", "T6166-", "-6175G", "T6181A", "A6192G", "G6195C", "-6225A", "-6226A", "A6251G", "C6253A", "G6314A", "G6345T", "G6346A", "T6365A", "A6394G", "T6523C", "G6575A", "T6599A", "C6673T", "-6698C", "-6699A", "-6700C", "-6701A", "-6702T", "-6703T", "C6721T", "A6723T", "G6767A", "A6773G", "A6776G", "A6788G", "A6790G", "C6792T", "G6808A", "A6820G", "C6824T", "T6825C", "-6830C", "-6831C", "-6832T", "-6838G", "A6841C", "C6857T", "T6862G", "G6935A", "T6949C", "G6954-", "A6962-", "C6991-", "G6995A", "-6997A", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "-7006G", "-7009T", "G7026A", "A7032G", "G7045A", "G7054A", "G7062C", "G7145T", "G7146C", "T7150G", "-7151G", "-7152A", "-7153A", "C7156T", "-7164C", "-7165T", "C7170T", "C7171T", "G7190A", "G7197A", "A7255C", "A7265T", "G7324T", "G7333T", "T7357G", "C7392T", "C7463T", "T7516G", "G7517T", "C7529G", "C7561A", "T7565A", "C7605A", "T7630A", "G7640A", "G7657A", "C7688T", "A7689C", "T7692A", "A7693T", "A7701C", "G7720A", "C7723T", "T7751C", "G7753A", "C7775T", "T7913G", "T7929G", "C7969A", "G7995A", "G8001A", "G8017C", "C8037T", "T8094G", "C8103T", "G8159A", "G8160A", "T8206A", "G8208A", "G8254A", "C8320A", "T8348A", "T8375A", "A8378T", "C8386A", "A8400T", "C8425A", "A8481C", "G8487C", "T8495A", "T8582C", "G8588A", "A8666G", "G8717A", "A8726C", "C8751T", "T8770A", "G8786T", "G8793A", "A8794G", "C8810T", "G8814A", "A8851T", "G8861A", "C8907T", "A8909G", "T8915G", "C8928A", "C8978-", "A8980-", "T9040G", "C9047G", "A9135G", "G9137A"], "INT": ["S24N", "L63I", "L74I", "D270E"], "RT-p51": ["K20R", "K32R", "E122K", "Q245E", "E248D", "D250E", "K287R", "Q334H", "F346H", "M357I", "R358K", "T377M", "I382V"], "RT-p66": ["K20R", "K32R", "E122K", "Q245E", "E248D", "D250E", "K287R", "Q334H", "F346H", "M357I", "R358K", "T377M", "I382V", "L452I", "T470S", "H483N"], "gp120": ["Y33H", "I81K", "N102H", "V106A", "T109I", "T112N", "-123K", "-124E", "K127T", "I133V", "V154I", "N158-", "N159-", "R164I", "T170A", "S171T", "D241S", "L249I", "Y290F", "V305I", "R307G", "T308A", "N312E", "E319A", "-326P", "T330N", "P335S", "T366-", "-371S", "-372S", "-373S", "-374N", "-375E", "R391K", "K393R", "G403A", "G431S", "N432K", "-433E", "N434S", "T439I", "D446N", "R448K", "T471S"], "gp41": ["A30V", "V72L", "L76V", "S88T", "A101D", "D109E", "D113N", "M118I", "Q129S", "L130H", "N133T", "L204V", "L209R", "R231K", "R233K", "A245V", "V264G", "A267V", "G286K", "S302N", "A325V"], "nef": ["A15E", "I20L", "A28E", "N47H", "A49P", "D54A", "F143Y", "K151R", "N157T", "E158K", "Q170L", "M173A", "Y202F"], "p17": ["A15E", "L34I", "M61L", "D93K", "K95A", "A120T"], "p2": ["V7A", "-12N"], "p24": ["V86T", "H87Q", "I91F", "E128D", "E180D"], "p6": ["G16R", "G18E", "I21T", "P23A", "S24P", "P25S", "-26S", "K42R"], "p7": ["R3K", "Q9P"], "pro": ["L63H"], "rev": ["E57Q", "G104E"], "tat": ["S24P", "S61G", "P70S", "L74V", "S87*"], "vif": ["R19N", "N22K", "Y30H", "V31I", "G37N", "E45D", "R47H", "V51I", "D61S", "K63E", "K67T", "H73N", "D78E", "S95K", "V98I", "D101S", "L109M", "T155K", "T157K", "R167Q", "T170V", "K176E"], "vpr": ["Q3R", "Y15H", "N28S", "R32K", "G41S", "Q77N", "A93T"], "vpu": ["V14I", "A16S", "F27L", "K37R", "M67L", "-72G", "-73N", "-74F", "-75D"]}, "labels": {"aa": "INT: S24N, L63I, L74I, D270E; RT-p51: K20R, K32R, E122K, Q245E, E248D, D250E, K287R, Q334H, F346H, M357I, R358K, T377M, I382V; RT-p66: K20R, K32R, E122K, Q245E, E248D, D250E, K287R, Q334H, F346H, M357I, R358K, T377M, I382V, L452I, T470S, H483N; gp120: Y33H, I81K, N102H, V106A, T109I, T112N, -123K, -124E, K127T, I133V, V154I, N158-, N159-, R164I, T170A, S171T, D241S, L249I, Y290F, V305I, R307G, T308A, N312E, E319A, -326P, T330N, P335S, T366-, -371S, -372S, -373S, -374N, -375E, R391K, K393R, G403A, G431S, N432K, -433E, N434S, T439I, D446N, R448K, T471S; gp41: A30V, V72L, L76V, S88T, A101D, D109E, D113N, M118I, Q129S, L130H, N133T, L204V, L209R, R231K, R233K, A245V, V264G, A267V, G286K, S302N, A325V; nef: A15E, I20L, A28E, N47H, A49P, D54A, F143Y, K151R, N157T, E158K, Q170L, M173A, Y202F; p17: A15E, L34I, M61L, D93K, K95A, A120T; p2: V7A, -12N; p24: V86T, H87Q, I91F, E128D, E180D; p6: G16R, G18E, I21T, P23A, S24P, P25S, -26S, K42R; p7: R3K, Q9P; pro: L63H; rev: E57Q, G104E; tat: S24P, S61G, P70S, L74V, S87*; vif: R19N, N22K, Y30H, V31I, G37N, E45D, R47H, V51I, D61S, K63E, K67T, H73N, D78E, S95K, V98I, D101S, L109M, T155K, T157K, R167Q, T170V, K176E; vpr: Q3R, Y15H, N28S, R32K, G41S, Q77N, A93T; vpu: V14I, A16S, F27L, K37R, M67L, -72G, -73N, -74F, -75D"}}, "children": [{"name": "KM606632", "node_attrs": {"div": 0.28691999999999995, "accession": "KM606632", "clade_membership": {"value": "other"}, "country": {"value": "EE"}, "date": {"value": 2006.0}, "Strain_name": {"value": "A14"}, "LANL_subtype": {"value": "CRF32_06A6"}}, "branch_attrs": {"mutations": {"nuc": ["A159T", "C160T", "G162A", "G164-", "T165-", "A166-", "A168-", "A169-", "A170-", "A171-", "T172-", "C173-", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "T201C", "A215-", "A216-", "T288C", "-304A", "-305A", "A371G", "G428A", "C456T", "G480A", "G495T", "G516C", "G534A", "G541A", "T571A", "T641C", "A680C", "G683A", "C697G", "-714A", "-715A", "-716G", "-717G", "-718C", "-719C", "-722T", "A762G", "T824C", "T1037C", "A1146C", "A1152C", "G1173A", "T1174C", "G1192A", "T1325C", "G1404A", "T1484C", "C1535T", "G1661A", "G1673A", "A1687G", "G1691A", "G1697A", "A1701T", "A1703G", "C1705T", "G1713A", "G1736A", "C1750T", "A1819G", "T1888C", "A1988C", "C2199T", "T2356C", "A2416C", "A2446G", "T2520C", "G2567T", "A2612T", "C2615A", "G2632T", "T2653C", "A2656G", "A2665C", "C2671T", "G2693A", "A2715C", "A2716C", "A2727G", "G2728C", "C2740T", "A2755G", "G2951A", "G2984A", "A3099G", "G3227A", "T3355C", "C3358T", "A3382G", "A3385G", "A3406G", "A3409G", "T3436C", "C3496T", "C3499T", "A3502G", "A3522G", "T3602C", "C3692T", "A3814G", "T3909A", "A3988G", "A4178G", "A4407G", "C4428T", "G4459A", "C4471T", "A4522G", "G4539A", "A4543T", "G4549A", "A4582G", "G4631A", "C4727T", "A4774T", "A4775T", "A4951G", "C5006T", "C5019T", "A5061G", "T5072C", "G5123A", "G5131A", "C5227T", "T5356C", "C5359T", "A5362G", "A5364G", "G5561A", "A5564C", "G5565A", "T5568C", "A5601G", "A5730T", "G5791-", "G5794-", "A5796-", "T5798-", "T5801A", "A5805G", "C5806T", "-5810T", "-5811C", "A5865G", "T6046A", "A6131C", "C6139T", "T6154A", "A6168-", "T6171-", "A6174-", "C6189T", "G6192C", "A6194G", "C6195T", "T6196G", "A6223G", "A6286G", "G6292A", "A6304G", "A6316G", "T6322A", "G6323C", "A6333G", "A6350G", "T6446A", "G6463A", "A6535G", "C6551T", "A6595G", "T6627C", "C6638A", "G6644A", "A6672G", "C6713A", "C6777G", "A6786G", "C6797A", "A6800G", "G6809A", "A6818G", "A6819G", "-6842A", "-6843T", "-6844A", "T6846C", "A6848-", "C6849-", "C6850-", "T6895C", "A6935C", "C6938T", "A6947G", "G6948C", "C6949A", "T6953-", "-6977A", "-6978A", "-6979A", "-6980T", "-6981G", "-6982G", "-6983T", "-6984T", "-6985T", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "-6991T", "-6992A", "-6993G", "-6994C", "A6995T", "-6996C", "-6998T", "-6999C", "-7000G", "C7107A", "T7145C", "A7149C", "A7152G", "A7154G", "T7156A", "A7161G", "T7180G", "G7281A", "A7345G", "A7633C", "T7688G", "C7691T", "A7781G", "G7790A", "A7791G", "C7801A", "A7820T", "G7831A", "A7880G", "G7976A", "G7980A", "G7987A", "G8036A", "G8079A", "A8086G", "G8087A", "C8213T", "G8264T", "T8278C", "A8408G", "A8409G", "C8487T", "A8643G", "A8656G", "G8666T", "G8682A", "T8740C", "A8746T", "C8809A", "T8810G", "A8846G", "T8847A", "T8887A", "G8893A", "A8970-", "T8972-", "T8973-", "C8975-", "T8976-", "A8977-", "A8979-", "G8981-", "G8982-", "G8983-", "A8984-", "C8985-", "T8986-", "T8987-", "T8988-", "C8989-", "C8990-", "G8991-", "G8995C", "G8996T", "T9000A", "T9002-", "C9003-", "C9004-", "A9005-", "G9006-", "G9007-", "G9008-", "A9009-", "G9010-", "G9011-", "T9012-", "G9013-", "T9014-", "G9015-", "G9016-", "C9017-", "C9018-", "T9019-", "G9020-", "G9021-", "G9022-", "C9023-", "G9024-", "G9025-", "G9026-", "G9027-", "C9028-", "T9029-", "G9030-", "G9031-", "G9033A", "G9037T"], "INT": ["L45Q", "I135V", "K211R", "T218I", "S255N", "E256D", "D286N"], "RT-p51": ["T35I", "I142T", "A158S", "K173S", "Q174K", "A200T", "E207A", "K211S", "A286T", "A297T", "D335G", "M377I", "E378K"], "RT-p66": ["T35I", "I142T", "A158S", "K173S", "Q174K", "A200T", "E207A", "K211S", "A286T", "A297T", "D335G", "M377I", "E378K", "S468P", "K476R"], "gp120": ["K4R", "N64K", "K93Q", "N112S", "I154M", "N160-", "N161-", "I166V", "L198I", "V258A", "Q262K", "V264I", "N273S", "Q287K", "A308G", "K309N", "N311S", "K316E", "A319T", "K322G", "-366K", "-367W", "-368F", "-369N", "S370N", "T418K", "S431P", "K432T", "E433G", "S434E", "E436G", "R476K"], "gp41": ["E110D", "S129A", "H130Y", "N160D", "D163S", "N166K", "K172R", "I173L", "M176I", "I193V", "G225R", "G226D", "V245I", "R259Q", "D262N", "L304F", "V321L"], "nef": ["T23E", "P24R", "P49S", "I101V", "K105R", "E108D", "V114I", "I133T", "Y135F", "A156E", "I168M", "C169S", "G178R", "M182K", "R184K"], "p17": ["G49S", "A54S", "A67T", "R69K", "F79Y", "A121G", "-126S", "-127K", "-128A"], "p2": ["N12S"], "p24": ["T86A", "N139H", "I141L", "V148T", "R154K", "G225S"], "p6": ["N3S", "T8S", "A9V", "A12T", "P24L", "N47S"], "pro": ["I64L"], "rev": ["V16I", "R17Q", "I18T", "R43K", "A47T", "C63Y", "R80E"], "tat": ["S62N", "K63T", "N64D"], "vif": ["E63V", "K122R", "R159G", "G182D"], "vpr": ["D7N", "I84T", "P85L", "Q86R", "R87G"], "vpu": ["K41N"]}, "labels": {"aa": "INT: L45Q, I135V, K211R, T218I, S255N, E256D, D286N; RT-p51: T35I, I142T, A158S, K173S, Q174K, A200T, E207A, K211S, A286T, A297T, D335G, M377I, E378K; RT-p66: T35I, I142T, A158S, K173S, Q174K, A200T, E207A, K211S, A286T, A297T, D335G, M377I, E378K, S468P, K476R; gp120: K4R, N64K, K93Q, N112S, I154M, N160-, N161-, I166V, L198I, V258A, Q262K, V264I, N273S, Q287K, A308G, K309N, N311S, K316E, A319T, K322G, -366K, -367W, -368F, -369N, S370N, T418K, S431P, K432T, E433G, S434E, E436G, R476K; gp41: E110D, S129A, H130Y, N160D, D163S, N166K, K172R, I173L, M176I, I193V, G225R, G226D, V245I, R259Q, D262N, L304F, V321L; nef: T23E, P24R, P49S, I101V, K105R, E108D, V114I, I133T, Y135F, A156E, I168M, C169S, G178R, M182K, R184K; p17: G49S, A54S, A67T, R69K, F79Y, A121G, -126S, -127K, -128A; p2: N12S; p24: T86A, N139H, I141L, V148T, R154K, G225S; p6: N3S, T8S, A9V, A12T, P24L, N47S; pro: I64L; rev: V16I, R17Q, I18T, R43K, A47T, C63Y, R80E; tat: S62N, K63T, N64D; vif: E63V, K122R, R159G, G182D; vpr: D7N, I84T, P85L, Q86R, R87G; vpu: K41N"}}}, {"name": "AY535660", "node_attrs": {"div": 0.28023, "accession": "AY535660", "clade_membership": {"value": "other"}, "country": {"value": "EE"}, "date": {"value": 2001.0}, "Strain_name": {"value": "EE0369"}, "LANL_subtype": {"value": "CRF32_06A6"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G206A", "-217T", "-304T", "G317A", "A412G", "G424A", "C426T", "A497G", "A509G", "A512G", "T525G", "A548G", "A563G", "T636C", "A678G", "G706A", "C713T", "A720-", "G721-", "T763C", "T767C", "A857G", "A860G", "C981T", "G987A", "C1006A", "G1184A", "G1268C", "G1459A", "C1490A", "A1587C", "T1676C", "C1681T", "G1773A", "T1792C", "C1826A", "A1933G", "G1981A", "T2095G", "T2386G", "A2395G", "G2431A", "T2458C", "A2472G", "C2596T", "C2613A", "A2629G", "A2677G", "G2683A", "C2694T", "A2713G", "C2720T", "T2737C", "C2749T", "A2929G", "C2968T", "A3080G", "C3095A", "A3151G", "A3226G", "A3280G", "T3328C", "A3334C", "G3340A", "A3387C", "A3391G", "C3405T", "T3412A", "A3430G", "G3448A", "T3450A", "G3463A", "A3484G", "C3497A", "A4297G", "A4429T", "A4492T", "C4501T", "G4573A", "T4612A", "G4618T", "A4658G", "C4976A", "C4978A", "A5161G", "C5237T", "C5393A", "C5479T", "A5481C", "C5513A", "G5566A", "T5582A", "G5599-", "T5600-", "T5602C", "-5792A", "-5793T", "-5795A", "-5797T", "-5799G", "G5802C", "G5803A", "A5804C", "G5808T", "G5809-", "C5920T", "A5964G", "C6024A", "G6029A", "C6039T", "C6165A", "-6166G", "-6167A", "-6169T", "-6170T", "-6172T", "-6173A", "A6186T", "C6189A", "C6190T", "A6191G", "A6200G", "C6202G", "-6203G", "-6204G", "-6205A", "-6206A", "-6207C", "-6208C", "-6209A", "-6210A", "-6211G", "-6212A", "-6213A", "-6214T", "-6215A", "-6216T", "-6217C", "-6218A", "-6219A", "-6220C", "A6232G", "A6266G", "G6267A", "A6282C", "T6289C", "A6329G", "A6330G", "A6336G", "C6369A", "A6374G", "A6570G", "G6611A", "A6649C", "C6654T", "T6781A", "G6799T", "G6807T", "C6815T", "A6833G", "A6834G", "-6993C", "-6994A", "-6996G", "-6998A", "-6999G", "-7000T", "A7065G", "A7069T", "A7155G", "G7162A", "T7173C", "G7291A", "A7782G", "G7818A", "A7996C", "T8016C", "A8019C", "G8161A", "A8212G", "C8213A", "A8240G", "G8328T", "G8388A", "T8456C", "G8490A", "G8531T", "A8564G", "C8590G", "A8604G", "A8874G", "C8966A", "-8971G", "-8974T", "-8980C"], "INT": ["D279E"], "RT-p51": ["K126R", "I178M", "A200V", "I329V", "H334N", "E413D", "K431T", "A437V"], "RT-p66": ["K126R", "I178M", "A200V", "I329V", "H334N", "E413D", "K431T", "A437V", "I452K", "S468T"], "gp120": ["K37R", "P57H", "E59K", "T62I", "T104K", "T107K", "I126M", "R138E", "K143T", "D157E", "-158G", "-159K", "-162N", "T172N", "K174E", "E239G", "A253T", "E265D", "T267I", "K315H", "R318I", "N327G", "Q361K", "S372R", "Q404R", "F440S"], "gp41": ["N160S", "K231N", "V238A", "N239T", "L304I", "N313D", "R342I"], "nef": ["V16I", "A50T", "E63D", "A83G", "S88G"], "p17": ["K26R", "R30K", "L61V", "L64V", "T115A", "S124N"], "p24": ["V11T", "H84Y", "P92Q", "Q179H"], "p6": ["P1L", "E32K", "L38S"], "p7": ["K41Q"], "pro": ["L10I", "F99L"], "rev": ["Y23N", "N50H", "Q57H", "E105K"], "tat": ["P6H", "Q35Y", "S46Y", "V69E"], "vif": ["I9N", "W11L", "S130R", "P131H", "H192R"], "vpr": ["H45Y"], "vpu": ["E62D"]}, "labels": {"aa": "INT: D279E; RT-p51: K126R, I178M, A200V, I329V, H334N, E413D, K431T, A437V; RT-p66: K126R, I178M, A200V, I329V, H334N, E413D, K431T, A437V, I452K, S468T; gp120: K37R, P57H, E59K, T62I, T104K, T107K, I126M, R138E, K143T, D157E, -158G, -159K, -162N, T172N, K174E, E239G, A253T, E265D, T267I, K315H, R318I, N327G, Q361K, S372R, Q404R, F440S; gp41: N160S, K231N, V238A, N239T, L304I, N313D, R342I; nef: V16I, A50T, E63D, A83G, S88G; p17: K26R, R30K, L61V, L64V, T115A, S124N; p24: V11T, H84Y, P92Q, Q179H; p6: P1L, E32K, L38S; p7: K41Q; pro: L10I, F99L; rev: Y23N, N50H, Q57H, E105K; tat: P6H, Q35Y, S46Y, V69E; vif: I9N, W11L, S130R, P131H, H192R; vpr: H45Y; vpu: E62D"}}}]}, {"name": "other_NODE_0000054", "node_attrs": {"div": 0.24213999999999997, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T155C", "G378T", "G428A", "C531T", "C590T", "A592G", "T593G", "T596C", "T635C", "A711-", "G712-", "C713-", "A776G", "T926A", "A932G", "T978G", "T1040C", "C1220T", "A1265G", "T1271G", "T1322C", "C1403T", "A1449C", "T1451G", "G1452T", "A1454C", "A1474G", "A1476G", "C1492A", "A1493G", "G1498C", "T1502A", "G1552A", "A1586G", "T1598C", "C1613T", "G1743A", "C1790T", "C1826T", "C1864T", "C1903A", "G2422A", "A2498G", "A2579G", "G2580C", "T2581A", "T2638C", "G2728A", "G2788A", "G2828C", "T3059A", "G3091A", "G3142A", "T3165A", "C3207T", "A3218G", "A3220G", "T3253C", "C3303T", "A3304G", "C3319T", "A3391C", "T3469C", "C3496T", "G3520A", "A3535T", "C3577T", "A3616G", "T3628C", "A3630G", "C3665A", "A3674G", "A3682C", "G3685A", "G3925A", "C4079T", "T4153A", "C4162A", "A4270C", "A4273G", "A4306G", "A4682T", "A4694G", "C4724T", "G4835T", "C4883T", "T4925C", "A4937C", "T4967A", "A4968G", "C5006T", "T5018G", "A5036G", "A5046G", "A5090G", "C5091T", "T5102C", "A5215G", "C5227A", "G5236A", "A5246G", "C5248A", "C5251A", "A5293T", "C5294T", "A5312G", "A5432C", "G5557A", "G5784A", "A5790G", "G5800A", "T6026C", "C6052T", "-6170G", "A6176-", "-6203G", "-6206A", "-6208C", "-6209A", "-6212A", "-6213C", "G6339-", "T6395A", "A6457G", "C6766T", "A6790T", "-6832A", "A6840-", "A6936G", "-6955G", "-6958T", "-6959A", "-6961T", "-6964T", "-6987A", "-6988T", "-6989A", "-6992A", "A7056G", "A7060G", "A7069C", "G7072T", "A7094T", "A7132T", "A7148-", "G7162T", "A7456G", "T7626A", "A7666T", "A7669G", "T7813C", "T8223C", "T8277C", "A8465G", "G8534C", "A8570G", "C8741T", "A8922C", "G8936A", "-8971G", "-8974G", "G8991A"], "INT": ["M50I"], "RT-p51": ["I135V", "S162A", "K173T", "S322T", "M357K", "A371V", "I375V", "T403M", "E432D"], "RT-p66": ["I135V", "S162A", "K173T", "S322T", "M357K", "A371V", "I375V", "T403M", "E432D", "Q480H", "K512R", "Q524K", "K527E", "E529D"], "gp120": ["P57T", "E125-", "S181T", "K315Q", "-328N", "K329I", "Q361G", "K401R", "M406I", "N414Y", "L426F"], "gp41": ["F108Y", "E121D", "K172R", "I307T"], "nef": ["E64D", "I194L"], "p17": ["A15S", "P66S", "Y86W"], "p2": ["N9Q", "-10S"], "p24": ["I15M", "L83V"], "p6": ["A22T"], "p7": ["S4G", "R11T", "R29K"], "pro": ["D35E"], "tat": ["K19T"], "vif": ["Q83H", "E117D", "H127Q", "I128V", "I154V"], "vpr": ["N48E", "I70V"]}, "labels": {"aa": "INT: M50I; RT-p51: I135V, S162A, K173T, S322T, M357K, A371V, I375V, T403M, E432D; RT-p66: I135V, S162A, K173T, S322T, M357K, A371V, I375V, T403M, E432D, Q480H, K512R, Q524K, K527E, E529D; gp120: P57T, E125-, S181T, K315Q, -328N, K329I, Q361G, K401R, M406I, N414Y, L426F; gp41: F108Y, E121D, K172R, I307T; nef: E64D, I194L; p17: A15S, P66S, Y86W; p2: N9Q, -10S; p24: I15M, L83V; p6: A22T; p7: S4G, R11T, R29K; pro: D35E; tat: K19T; vif: Q83H, E117D, H127Q, I128V, I154V; vpr: N48E, I70V"}}, "children": [{"name": "AJ508597", "node_attrs": {"div": 0.28967999999999994, "accession": "AJ508597", "clade_membership": {"value": "other"}, "country": {"value": "NE"}, "date": {"value": 2000.0}, "Strain_name": {"value": "NE36"}, "LANL_subtype": {"value": "CRF30_0206"}}, "branch_attrs": {"mutations": {"nuc": ["T10C", "G52A", "A161C", "T163C", "T213C", "T214G", "T227A", "A303T", "G354A", "A374G", "A398G", "A492T", "G542A", "T602C", "G615A", "A656G", "C668T", "G740A", "T763C", "A806G", "C890T", "A1134G", "G1256A", "C1296T", "A1329T", "G1354C", "T1444C", "G1459A", "C1478T", "A1495G", "T1511C", "C1535T", "A1642G", "C1681T", "A1712C", "G1733A", "A1762C", "C1768A", "T1791C", "G1839C", "A1848G", "A1907G", "A1933G", "G1998A", "C2062T", "C2071T", "A2203C", "A2215G", "T2245C", "A2254G", "A2362G", "G2389T", "A2395G", "A2398G", "G2459A", "C2464T", "G2509A", "G2530A", "C2615A", "A2629G", "G2686A", "G2704A", "G2710A", "C2749T", "T2770C", "A2839G", "A2842G", "C2845T", "G2855A", "A2875G", "G2925A", "C2941T", "C2953A", "A3031G", "A3037G", "A3043G", "G3046A", "A3071G", "G3154A", "A3217G", "T3219C", "T3412C", "C3497T", "A3529G", "C3589T", "T3613C", "A3631G", "A3706G", "A3736G", "T3853C", "A3871G", "T3967C", "C3977T", "A3985C", "A4027G", "A4033C", "G4063A", "G4109A", "A4112G", "A4118C", "T4216C", "G4264A", "A4279G", "C4436A", "A4437C", "T4656C", "T4678A", "T4679G", "A4684G", "T4697G", "A4774G", "G4779A", "A4781T", "T4783G", "A4784T", "A4792T", "T4793A", "G4818A", "A4838G", "G4855A", "T4858A", "A4880G", "A4904G", "C4943T", "C4976A", "G4982C", "C5056T", "G5060A", "G5062T", "G5075A", "A5093G", "A5112G", "A5159G", "T5170G", "G5173A", "G5176A", "C5222A", "A5223T", "G5267A", "A5268C", "A5272G", "T5292C", "C5306T", "C5327T", "C5333T", "C5336A", "A5357T", "C5359G", "C5361G", "A5362G", "G5372C", "A5375G", "C5384T", "A5385G", "A5396G", "A5398C", "T5412C", "G5415C", "A5418G", "G5426A", "G5433A", "C5437G", "C5444G", "C5446A", "C5447A", "A5448G", "C5451T", "T5454C", "G5463A", "T5466C", "A5471G", "T5472G", "A5482T", "G5484A", "A5493G", "T5511C", "A5538C", "A5545G", "C5546G", "G5548A", "T5556A", "A5560C", "G5561A", "A5563C", "A5567G", "T5568C", "C5584T", "A5644G", "C5654T", "T5688C", "A5726G", "T5778C", "-5824A", "C5826T", "T5852A", "A5856G", "G5866T", "G5867A", "A5868G", "A5957G", "A6020C", "-6167A", "-6169C", "-6172A", "-6173A", "-6175C", "-6176T", "A6177G", "G6179A", "C6183A", "A6185G", "A6186T", "T6187A", "T6196C", "G6198C", "A6200G", "-6204G", "-6205T", "-6207C", "-6210A", "-6211T", "-6214C", "-6215A", "-6216T", "-6217G", "-6218G", "-6219T", "-6220G", "A6223T", "G6224-", "G6227C", "A6228T", "A6229G", "C6234A", "T6245A", "T6246G", "T6252G", "A6259C", "G6260A", "A6262G", "A6263G", "G6267C", "A6268C", "A6272G", "A6276T", "A6279G", "G6280A", "A6283T", "G6290A", "T6296G", "T6297A", "A6302G", "A6313C", "A6316C", "T6325C", "T6328C", "-6339C", "A6349G", "G6362T", "T6385C", "A6394G", "A6490C", "T6523C", "G6572A", "A6574G", "G6576A", "A6581G", "G6605A", "C6618T", "G6647C", "A6648C", "T6668G", "A6669G", "-6688T", "-6689A", "-6690T", "-6691A", "-6692A", "-6693C", "T6694C", "A6695T", "A6697T", "A6723G", "T6724G", "G6771A", "A6786C", "T6787G", "A6788G", "G6793A", "G6799A", "C6810A", "A6823T", "T6827C", "-6830G", "-6831G", "A6834T", "-6838T", "-6840T", "-6842A", "-6843C", "-6844T", "A6854G", "A6855C", "T6860G", "G6871A", "C6874T", "C6875T", "A6947G", "T6950A", "T6953C", "G6954T", "-6956C", "-6957T", "-6960A", "-6963G", "-6965A", "-6966C", "-6967A", "-6983T", "-6984C", "-6985T", "-6986A", "-6990A", "C6991T", "-6993C", "-6994T", "A7007-", "-7009A", "C7020G", "A7032T", "A7035G", "G7040A", "T7075C", "C7089A", "C7114T", "T7117A", "C7124T", "G7144A", "G7145A", "G7146A", "A7149-", "T7150-", "T7162C", "-7164G", "-7165T", "A7241G", "C7266A", "G7324T", "A7348C", "A7366G", "C7392T", "A7492G", "C7510A", "T7516G", "G7517T", "G7658C", "A7690G", "A7701G", "C7727G", "A7747G", "G7765A", "T7796A", "A7817G", "T7824G", "A7887G", "T7888A", "A7931C", "A7937G", "A7938C", "A7942C", "G7962A", "G7964A", "A7965G", "G7973C", "A7984C", "G7992A", "A7997G", "C7998A", "G8005A", "A8006G", "T8008A", "A8011C", "A8019G", "A8032G", "C8047T", "G8079A", "C8112T", "A8119G", "A8130G", "A8152G", "A8193G", "A8207G", "G8208A", "G8216A", "T8256C", "G8264A", "C8320T", "A8323T", "A8329G", "G8330T", "A8342C", "T8366C", "T8375G", "G8385C", "C8386G", "A8390T", "G8407A", "G8414T", "G8424A", "G8441A", "A8458G", "G8459A", "C8480G", "A8489C", "T8501A", "C8503A", "G8531A", "A8553C", "A8555G", "T8558G", "T8568C", "T8591A", "T8597C", "C8640T", "A8666G", "G8682A", "C8684G", "C8688A", "T8699A", "A8701T", "T8708A", "C8720T", "G8774A", "C8775T", "G8777A", "G8784A", "A8794C", "G8795A", "A8804G", "G8805A", "C8812A", "A8819G", "T8829A", "C8831T", "C8832T", "G8834A", "A8846C", "C8849T", "G8859A", "C8860T", "T8867C", "A8873C", "G8875A", "T8883C", "A8885G", "A8886G", "G8888C", "C8903T", "T8904A", "C8905G", "A8909G", "G8917A", "C8927T", "A8977G", "C8978A", "A8979C", "A8980G", "C9017T", "C9018T", "C9023A", "G9026A", "C9028T", "A9060T", "C9068T", "T9072C", "C9073T", "T9095C", "A9135G", "G9137A"], "INT": ["I84M", "V112I", "I113V", "T115P", "Q221T"], "RT-p51": ["E36D", "E122K", "Q174K", "I178M", "V254I", "R277K", "I326V", "V375A"], "RT-p66": ["E36D", "E122K", "Q174K", "I178M", "V254I", "R277K", "I326V", "V375A"], "gp120": ["N1S", "K4N", "D5S", "T35A", "I56L", "T107N", "N108C", "T110N", "-114S", "-115T", "-116D", "-117G", "F131S", "I133S", "E136-", "I137-", "R138-", "D139-", "K141V", "K142T", "K143D", "A146T", "F148D", "K150E", "-162T", "T170S", "K212N", "E240K", "I243V", "L249F", "D251N", "T255I", "E265P", "Y272G", "H280T", "I281F", "Y290W", "S306N", "K309N", "N311T", "N312D", "M313T", "S324T", "F325H", "-326G", "N327I", "N334A", "S336A", "S365G", "-367E", "-368L", "-369N", "-371T", "-377S", "-378N", "-379N", "-380T", "-381A", "T385-", "P389R", "K393I", "Q394R", "V396I", "A412E", "G431N", "N434-", "E436D", "T437S", "I463V", "T471N"], "gp41": ["A30V", "V72L", "E119Q", "N133S", "Q142E", "S165T", "R172G", "F174C", "N195R", "I210L", "N212A", "G220E", "E221R", "E224Q", "G230D", "T232D", "I235V", "N239S", "R259Q", "T270I", "H276R", "K297R", "S302D", "D305N", "V318A", "V321I", "L340F", "A343S"], "nef": ["A15R", "R22Q", "A28T", "K39R", "S46R", "V114M", "H116N", "Y120F", "V148M", "K151A", "E155K", "C163S", "E177D", "G178K", "M182V", "R192K", "Y202F"], "p1": ["K4R"], "p17": ["V7I", "T53S", "D93E", "V94I", "I107M"], "p2": ["V7A", "A11N"], "p24": ["V11T", "I135V", "T200S", "G208A"], "p6": ["P1L", "Q28P", "P30Q"], "p7": ["K10R"], "pro": ["R14T", "E17G", "N37D", "C67Y"], "rev": ["N8T", "Q11E", "L14Q", "V16I", "I18A", "Y28S", "K30S", "N32H", "R39K", "R42T", "N50R", "D53S", "S54T", "I55L", "T62A", "P67S", "N91D", "I102V"], "tat": ["P3L", "K7S", "I8L", "Q13H", "R17Q", "P21A", "T23S", "S24K", "Y32W", "M36L", "Q54H", "T57G", "A58T", "S62H", "K63Q", "N64G", "P70S", "L74F", "T77P", "Q78P", "E85K", "K86E"], "vif": ["V31K", "K33R", "G37E", "K63R", "V65I", "I66S", "Y69L", "D78N", "R90K", "L91Q", "S130R", "R132S", "T157I", "R159I", "R167K", "K176E"], "vpr": ["Q3R", "T19A", "H40I", "E55T", "I63T", "P85R", "Q86G", "S94G"], "vpu": ["I13V", "A16F", "E40G", "D60E", "T61L", "E62A", "E63A", "V65M", "T66E", "M68G", "-69N", "E70F", "M71D", "L82*"]}, "labels": {"aa": "INT: I84M, V112I, I113V, T115P, Q221T; RT-p51: E36D, E122K, Q174K, I178M, V254I, R277K, I326V, V375A; RT-p66: E36D, E122K, Q174K, I178M, V254I, R277K, I326V, V375A; gp120: N1S, K4N, D5S, T35A, I56L, T107N, N108C, T110N, -114S, -115T, -116D, -117G, F131S, I133S, E136-, I137-, R138-, D139-, K141V, K142T, K143D, A146T, F148D, K150E, -162T, T170S, K212N, E240K, I243V, L249F, D251N, T255I, E265P, Y272G, H280T, I281F, Y290W, S306N, K309N, N311T, N312D, M313T, S324T, F325H, -326G, N327I, N334A, S336A, S365G, -367E, -368L, -369N, -371T, -377S, -378N, -379N, -380T, -381A, T385-, P389R, K393I, Q394R, V396I, A412E, G431N, N434-, E436D, T437S, I463V, T471N; gp41: A30V, V72L, E119Q, N133S, Q142E, S165T, R172G, F174C, N195R, I210L, N212A, G220E, E221R, E224Q, G230D, T232D, I235V, N239S, R259Q, T270I, H276R, K297R, S302D, D305N, V318A, V321I, L340F, A343S; nef: A15R, R22Q, A28T, K39R, S46R, V114M, H116N, Y120F, V148M, K151A, E155K, C163S, E177D, G178K, M182V, R192K, Y202F; p1: K4R; p17: V7I, T53S, D93E, V94I, I107M; p2: V7A, A11N; p24: V11T, I135V, T200S, G208A; p6: P1L, Q28P, P30Q; p7: K10R; pro: R14T, E17G, N37D, C67Y; rev: N8T, Q11E, L14Q, V16I, I18A, Y28S, K30S, N32H, R39K, R42T, N50R, D53S, S54T, I55L, T62A, P67S, N91D, I102V; tat: P3L, K7S, I8L, Q13H, R17Q, P21A, T23S, S24K, Y32W, M36L, Q54H, T57G, A58T, S62H, K63Q, N64G, P70S, L74F, T77P, Q78P, E85K, K86E; vif: V31K, K33R, G37E, K63R, V65I, I66S, Y69L, D78N, R90K, L91Q, S130R, R132S, T157I, R159I, R167K, K176E; vpr: Q3R, T19A, H40I, E55T, I63T, P85R, Q86G, S94G; vpu: I13V, A16F, E40G, D60E, T61L, E62A, E63A, V65M, T66E, M68G, -69N, E70F, M71D, L82*"}}}, {"name": "AJ508595", "node_attrs": {"div": 0.27915999999999996, "accession": "AJ508595", "clade_membership": {"value": "other"}, "country": {"value": "NE"}, "date": {"value": 1997.0}, "Strain_name": {"value": "NE03"}, "LANL_subtype": {"value": "CRF30_0206"}}, "branch_attrs": {"mutations": {"nuc": ["A49-", "G50A", "A159G", "A161G", "A217T", "A302T", "G317A", "A417C", "G452A", "C456T", "A503T", "A512G", "A513C", "G518A", "G534A", "A566C", "G579A", "G614T", "A619G", "A645T", "A654G", "T662C", "G671A", "T771C", "C902T", "T944A", "A945G", "G956C", "C1005G", "A1022G", "C1136T", "A1142G", "C1330A", "T1334G", "G1339A", "A1526G", "A1564G", "A1567G", "G1673A", "G1685A", "A1687G", "G1691A", "A1694G", "G1697A", "C1724G", "T1728A", "C1730G", "G1736A", "C1749T", "C1754T", "C1756A", "A1759G", "G1760A", "G1766A", "A1775C", "A1780G", "G1781A", "G1794A", "C1831A", "A1918G", "A2007G", "T2011C", "C2047T", "G2068A", "T2087C", "A2119G", "G2224A", "T2257C", "T2281C", "T2335C", "A2380T", "T2386C", "G2392A", "T2420C", "C2452T", "G2456C", "A2461G", "A2592G", "A2626G", "C2644T", "T2668A", "A2677G", "G2818C", "C2831T", "A2884G", "C2909G", "G2914A", "T2930C", "A2932G", "C2968T", "C2975A", "A2980G", "C2985A", "A2986G", "A3034T", "C3067T", "A3136G", "C3223T", "A3279G", "T3399C", "A3478G", "A3481G", "T3550C", "A3553G", "G3617T", "G3679A", "G3756A", "G3769A", "T3778C", "C3898T", "A3944G", "G3952A", "A3985G", "A3989G", "A4105G", "C4117T", "A4178G", "A4186G", "T4258C", "A4474C", "T4665C", "A4677G", "A4693G", "A4696G", "C4761T", "A4781G", "A4782G", "A4786G", "C4857T", "G4878A", "T4910C", "T4932A", "A4951C", "A5059G", "A5065G", "A5086G", "G5099A", "G5179A", "G5185A", "A5186C", "T5206C", "C5303T", "A5324G", "C5397A", "C5446T", "A5481C", "G5499A", "G5566A", "A5586G", "A5594G", "G5599A", "T5602A", "G5614C", "C5615T", "A5622T", "C5627T", "T5628G", "T5653G", "C5678T", "G5708A", "A5709G", "A5718G", "G5730A", "A5748G", "G5794A", "-5812G", "C5870A", "A5881G", "C5884A", "G5902A", "T6100C", "C6116T", "-6167G", "-6169T", "-6172C", "A6174-", "A6177-", "T6178-", "G6179-", "C6180-", "T6181-", "T6187C", "A6192C", "A6194G", "-6204T", "-6205C", "-6207A", "-6210T", "-6211C", "-6214G", "-6215G", "-6216G", "-6217T", "-6218A", "-6219A", "-6220C", "A6222C", "-6225A", "-6226A", "G6227A", "A6229T", "A6230T", "A6233G", "C6253A", "C6256G", "G6274T", "A6281C", "T6289C", "C6293G", "G6311A", "C6317T", "T6334A", "A6336C", "A6338-", "T6340-", "G6346A", "C6363T", "T6487C", "A6505G", "G6550A", "A6553G", "T6577A", "T6599C", "G6611A", "G6631A", "C6654T", "A6655G", "C6661T", "G6684A", "-6698C", "-6699A", "-6700C", "-6701A", "-6702T", "-6703T", "A6706G", "G6712A", "A6734G", "T6757C", "C6758T", "A6779G", "A6780G", "C6792T", "A6818G", "T6829G", "-6830A", "-6831A", "T6835G", "-6838C", "A6839-", "A6841-", "A6854C", "T6856A", "T6860C", "C6861A", "G6905A", "A6937C", "G6948T", "T6949G", "T6953G", "-6956A", "-6957G", "-6960G", "-6963A", "-6990T", "-6993G", "-6994G", "-6996A", "-6997A", "-6998A", "-6999G", "-7000T", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "-7006G", "-7009C", "A7027G", "T7087C", "T7105C", "A7112G", "T7141C", "-7148C", "-7151C", "-7152A", "-7153C", "A7155G", "A7158G", "G7160A", "A7163-", "T7180G", "G7182A", "G7199A", "A7269G", "G7270A", "T7603C", "G7628A", "G7640A", "G7657A", "A7676G", "G7720A", "C7723T", "A7747C", "C7775T", "G7807A", "G7915A", "A7918G", "A7943G", "T7968C", "C7969A", "G7980A", "T8016C", "C8044G", "C8092A", "G8098A", "G8141A", "A8142G", "G8143A", "G8170A", "T8171G", "T8173G", "A8188G", "T8210G", "C8213A", "G8268T", "G8328T", "T8348A", "G8387A", "G8393A", "A8453G", "T8495A", "T8504C", "C8514T", "G8516A", "C8521A", "G8526A", "A8527C", "G8528A", "A8584T", "G8588A", "C8590G", "A8653G", "G8717A", "T8740C", "A8746T", "C8751T", "C8756T", "G8786C", "T8789C", "G8793A", "G8798A", "C8809A", "C8810A", "G8814A", "A8874G", "G8893A", "T8915G", "C8921T", "C8928A", "T8947A", "T8948C", "A9134-"], "INT": ["S57G", "I72V", "I135V"], "RT-p51": ["D121H", "K166R", "P272A", "P294T", "A297E", "K395R", "V435A"], "RT-p66": ["D121H", "K166R", "P272A", "P294T", "A297E", "K395R", "V435A", "S468P", "A508S", "S554N"], "gp120": ["L6M", "N105D", "V111N", "N113E", "-114N", "-115L", "-116A", "I126-", "K127-", "K140N", "K143Q", "L147V", "V153I", "P155S", "N160K", "N161T", "T170V", "D241G", "A253T", "T267M", "R277K", "D294S", "H302Y", "K309G", "E319A", "K322E", "S324L", "F325L", "-326K", "N327K", "I331-", "T332-", "N334Q", "S336H", "G351R", "S365M", "T366S", "S370-", "-384S", "N420D", "N432H", "-433S", "N435-", "E436-", "T437-", "G443E", "D449N", "K472R"], "gp41": ["D109N", "D113N", "M118I", "N125D", "E148D", "T214A", "I222T", "G226D", "V238A", "D247E", "F263L", "E280R", "C290G", "L303V", "L304I", "G322V", "R342I"], "nef": ["T23A", "P24E", "P25G", "D54A", "A60E", "E62T", "Y81F", "A83G", "K104R", "I133T", "Y135F", "A156E", "N157T", "E158K", "M173A", "R184K"], "p17": ["K28Q", "I60L", "M61I", "A67T", "V82I", "K95R", "I104L", "I107V"], "p2": ["A11S"], "p24": ["V11I", "S14P", "D71E", "T72A", "E75D", "P92A", "T200N", "I201M", "R203K"], "p6": ["N3S", "F15L", "F17M", "P23S", "P25-", "-26Q", "K27R", "E32D", "E34G", "A39T", "S51*"], "p7": ["K33R", "K34R"], "pro": ["K70R"], "rev": ["Q24R", "N32S", "R66G", "R82S", "D84N", "G98E", "D99N", "V108R", "L109V", "T114A"], "tat": ["Q35H", "S87Q"], "vif": ["Y27H", "K36R", "I66V", "K67R", "V98I", "S116T", "K122T", "K158R", "K160R"], "vpr": ["N28H", "Q77H"], "vpu": ["A3L", "E5D", "S7L", "T24I", "R34K", "V65A", "M67L", "-72G", "-73D", "-74F", "-75D"]}, "labels": {"aa": "INT: S57G, I72V, I135V; RT-p51: D121H, K166R, P272A, P294T, A297E, K395R, V435A; RT-p66: D121H, K166R, P272A, P294T, A297E, K395R, V435A, S468P, A508S, S554N; gp120: L6M, N105D, V111N, N113E, -114N, -115L, -116A, I126-, K127-, K140N, K143Q, L147V, V153I, P155S, N160K, N161T, T170V, D241G, A253T, T267M, R277K, D294S, H302Y, K309G, E319A, K322E, S324L, F325L, -326K, N327K, I331-, T332-, N334Q, S336H, G351R, S365M, T366S, S370-, -384S, N420D, N432H, -433S, N435-, E436-, T437-, G443E, D449N, K472R; gp41: D109N, D113N, M118I, N125D, E148D, T214A, I222T, G226D, V238A, D247E, F263L, E280R, C290G, L303V, L304I, G322V, R342I; nef: T23A, P24E, P25G, D54A, A60E, E62T, Y81F, A83G, K104R, I133T, Y135F, A156E, N157T, E158K, M173A, R184K; p17: K28Q, I60L, M61I, A67T, V82I, K95R, I104L, I107V; p2: A11S; p24: V11I, S14P, D71E, T72A, E75D, P92A, T200N, I201M, R203K; p6: N3S, F15L, F17M, P23S, P25-, -26Q, K27R, E32D, E34G, A39T, S51*; p7: K33R, K34R; pro: K70R; rev: Q24R, N32S, R66G, R82S, D84N, G98E, D99N, V108R, L109V, T114A; tat: Q35H, S87Q; vif: Y27H, K36R, I66V, K67R, V98I, S116T, K122T, K158R, K160R; vpr: N28H, Q77H; vpu: A3L, E5D, S7L, T24I, R34K, V65A, M67L, -72G, -73D, -74F, -75D"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000662", "node_attrs": {"div": 0.07683, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A21G", "T30C", "T49A", "A50G", "C96A", "C426A", "G452A", "G716A", "A1115C", "-1455G", "T1676C", "T1679C", "-1746A", "-1747C", "C2467T", "T2542G", "C2615A", "C2626A", "T2653C", "C2671T", "T2689C", "A2715C", "A2716T", "G2722A", "C2740T", "A2755G", "A2764G", "A2818C", "G2830A", "G2872A", "G2902A", "C2909G", "A2920G", "A2932G", "T2944C", "C2953T", "G3029A", "A3030C", "A3031C", "A3034T", "A3071G", "G3091A", "G3099A", "G3142A", "G3154A", "T3165A", "C3175T", "A3192G", "G3205A", "C3207T", "A3208G", "T3253C", "A3279G", "C3319T", "C3358T", "G3379A", "A3409G", "A3448G", "A3490G", "T3493A", "A3508G", "G3520A", "A3535T", "A3538G", "T3541C", "T3550C", "C3577T", "A3616G", "T3628C", "A3630G", "G3643A", "T3644G", "T3652C", "C3665G", "A3685G", "A3772G", "T3991C", "A4076C", "A5696T", "A5734G", "-6210T", "-6215A", "G6336A", "G8407A", "A8469G", "A8486G", "G8517A", "A8518G", "T8568C", "T8584A", "T8746A", "C8809A", "T9060A"], "RT-p51": ["Q174K", "D177E", "I178M", "E207A", "E312T", "I326V", "M357K", "K366R", "A371V", "K395R"], "RT-p66": ["Q174K", "D177E", "I178M", "E207A", "E312T", "I326V", "M357K", "K366R", "A371V", "K395R", "Q480H", "K512R", "L517V", "Q524E"], "gp120": ["N105D", "K319E"], "nef": ["R22Q", "I48M", "E59R", "E98D"], "vif": ["P131S"], "vpu": ["Y30F", "I43V"]}, "labels": {"aa": "RT-p51: Q174K, D177E, I178M, E207A, E312T, I326V, M357K, K366R, A371V, K395R; RT-p66: Q174K, D177E, I178M, E207A, E312T, I326V, M357K, K366R, A371V, K395R, Q480H, K512R, L517V, Q524E; gp120: N105D, K319E; nef: R22Q, I48M, E59R, E98D; vif: P131S; vpu: Y30F, I43V"}}, "children": [{"name": "results/subtype_trees/CRF96_cpx.nwk", "node_attrs": {"div": 0.11307, "clade_membership": {"value": "CRF96_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-161T", "-162G", "-163A", "-164G", "-165T", "-166A", "T213C", "T214G", "-217A", "-280G", "-304T", "G361C", "T572C", "A576G", "A585G", "C586T", "C587T", "A604G", "G615A", "A618G", "A619C", "A645C", "T655A", "A673G", "A697C", "C722T", "T749G", "A809G", "C926T", "A944T", "T1001A", "G1016A", "A1049G", "G1078C", "T1094C", "A1101G", "C1103T", "C1136T", "A1142G", "G1173A", "T1174C", "G1192A", "G1199A", "A1205G", "A1217G", "A1237T", "C1245T", "C1253T", "G1268A", "A1292C", "A1339G", "A1355G", "A1359T", "C1362A", "T1409C", "T1421G", "C1439T", "G1443-", "T1444-", "A1445-", "A1448C", "C1453-", "A1454-", "-1456C", "-1458A", "-1459C", "-1460C", "G1476A", "G1477A", "G1487A", "C1491T", "A1492T", "G1493T", "T1501C", "-1503G", "-1504T", "-1505T", "G1508A", "A1526G", "G1568A", "G1619A", "T1682C", "A1701T", "T1729-", "G1731-", "G1732-", "G1733-", "G1734-", "A1735T", "A1736C", "A1740G", "C1741A", "A1742G", "-1748C", "C1751A", "T1752G", "G1766A", "A1776G", "A1777G", "A1780G", "C1782-", "T1787-", "T1790C", "G1794A", "A1832T", "A1839G", "A1841G", "A1849C", "C1853A", "G1858A", "A1861G", "A1867C", "T1873C", "G1981A", "A2029G", "T2035C", "A2063C", "A2075C", "T2080A", "T2086A", "T2087C", "C2098A", "T2101C", "T2107C", "T2245C", "G2293A", "C2296T", "A2297G", "A2329G", "T2356C", "T2383C", "G2392A", "T2443C", "G2459A", "A2498G", "G2539A", "A2566G", "A2570G", "A2599G", "A2615G", "A2629G", "T2654C", "G2704T", "G2728A", "T2770C", "A2808G", "A2887G", "A2924C", "A3120T", "G3166A", "A3200G", "A3217G", "A3218G", "A3265G", "T3544G", "A3547G", "A3571G", "G3644A", "A3651G", "A3684G", "C3712T", "C3751A", "T3754C", "C3756G", "T3779C", "G3796A", "A3808G", "A3817G", "C3823T", "G3825A", "T3850C", "T3865C", "C3889T", "G3916A", "T3946C", "T3962C", "C4006T", "A4021G", "C4042T", "A4051G", "A4057G", "A4078C", "A4084G", "A4105C", "A4111G", "C4132T", "G4195A", "A4219G", "A4225G", "T4234C", "C4258T", "A4285G", "C4576T", "T4579C", "A4695G", "G4736A", "C4761A", "A4774G", "G4786A", "A4900G", "C4937A", "A4951G", "G5059A", "A5148T", "T5152C", "C5432A", "G5444A", "C5482T", "T5515C", "G5545A", "A5563G", "A5711G", "A5746C", "G5747A", "A5754G", "A5784G", "G5791-", "A5792-", "T5793-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "G5799-", "C5802T", "A5803G", "A5805G", "C5806T", "A5817G", "A5947G", "C5984T", "T5986C", "C6004T", "A6013G", "C6023T", "T6064C", "C6148T", "A6167G", "-6170T", "-6172G", "-6174C", "A6177C", "G6179A", "T6180A", "C6183A", "-6202C", "-6204C", "-6205T", "-6208A", "-6211A", "-6212G", "-6213G", "-6216A", "-6217T", "-6218A", "-6219T", "-6220G", "-6222C", "-6225A", "-6226T", "-6229A", "-6230G", "A6279G", "A6281C", "T6287C", "A6292C", "G6323A", "A6339G", "-6340T", "G6345T", "C6483A", "A6574G", "A6581G", "C6660T", "A6664G", "A6689G", "G6693A", "T6717C", "A6725G", "T6760C", "G6764A", "G6773A", "G6802A", "C6807T", "A6810G", "A6819G", "-6833A", "-6834A", "-6835G", "A6839G", "A6848G", "C6854A", "A6855G", "T6901C", "A6913G", "C6925T", "C6938T", "-6955G", "-6959A", "-6960A", "-6961G", "-6962G", "-6963G", "-6964A", "-6965A", "-6966A", "-6967T", "-6968G", "-6969A", "-6970A", "-6971A", "-6972C", "-6973C", "-6974A", "-6975T", "-6976G", "-6977G", "-6978A", "-6979G", "-6980A", "-6981G", "-6982G", "-6983A", "-6984A", "-6985T", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "-6991C", "-6993C", "-6994T", "T7090G", "A7095C", "G7132A", "A7152G", "A7155C", "T7156A", "A7160G", "-7162G", "-7164C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "C7238G", "A7256G", "G7456A", "C7463A", "T7624C", "T7656C", "A7688G", "C7691A", "A7692T", "A7701G", "G7702T", "A7711G", "G7744A", "A7756G", "A7782G", "G7790A", "A7791G", "T7801G", "A7818G", "A7885G", "C7921T", "A7931T", "G7957A", "A8011C", "C8038G", "A8050G", "A8099G", "T8101G", "G8102A", "T8182A", "A8228G", "G8231A", "A8273G", "C8287T", "A8306C", "C8320T", "G8349A", "G8421A", "T8505A", "G8558A", "G8590C", "A8604G", "A8660G", "T8675C", "C8684T", "C8690T", "T8711C", "A8717G", "G8732A", "A8739G", "G8774A", "C8789T", "A8819G", "G8873C", "C8904T", "A8938G", "G8942A", "C8951T", "T9014G", "C9017T"], "INT": ["S17N"], "RT-p51": ["S68G", "E122K", "I135V", "I159V", "K174E", "E203D", "K238R", "K277Q", "Y342F", "T369A", "I375V"], "RT-p66": ["S68G", "E122K", "I135V", "I159V", "K174E", "E203D", "K238R", "K277Q", "Y342F", "T369A", "I375V", "H483Q", "V517I", "N519S", "K530R"], "gp120": ["H57Y", "-106A", "-107K", "-109D", "-115N", "-117G", "-118N", "-119M", "-120T", "-121D", "-122E", "-123V", "-124R", "E125-", "Q142R", "K143Q", "Y145H", "S161-", "R164M", "P210Q", "I243V", "I279V", "V288A", "R291G", "E304K", "G307R", "A318V", "E319G", "K322R", "-326K", "N328E", "K329-", "I332V", "Q334R", "-368K", "-369N", "-370E", "-371T", "-372M", "-375E", "-376R", "-377N", "-378N", "-379N", "-380T", "S412R", "N414T", "Q462E"], "gp41": ["N113D", "I118T", "N129D", "Q130I", "E133G", "N160S", "D163S", "N166K", "T210F", "D230G", "I266V", "A267T", "I309V", "A310T", "R324G"], "nef": ["G3S", "A27T", "I43V", "C55S", "G83A", "S88G", "I133V", "E174D", "H199R"], "p17": ["S9T", "T81A", "T84V", "Q90R", "V94I", "K95A", "I104L", "Q113R", "D121A"], "p2": ["V7T", "-11A"], "p24": ["L15I", "E71D", "G116A", "I124V", "E128D", "V148T", "R154K", "Y169F", "E180D", "E187D", "K203R", "T210S", "L211I"], "p6": ["T8S", "G18-", "E19-", "T21E", "P25A", "-26P", "K33G", "E34G", "L35T", "Y36-"], "p7": ["G4N", "Q9F", "I12T", "L24I"], "pro": ["T12S", "K14R", "I15V", "L19I", "L63P", "I93L"], "rev": ["Y28F", "A37T", "T68E", "D84G", "C85D", "S112T"], "tat": ["T19K", "S23N", "Y47H", "G57R", "K63E", "G83D"], "vif": ["L59I", "K63R", "R67K", "D117E", "K122R", "R158K", "T188S", "M189T"], "vpr": ["Y15F"], "vpu": ["K35R", "R47Q"]}, "labels": {"aa": "INT: S17N; RT-p51: S68G, E122K, I135V, I159V, K174E, E203D, K238R, K277Q, Y342F, T369A, I375V; RT-p66: S68G, E122K, I135V, I159V, K174E, E203D, K238R, K277Q, Y342F, T369A, I375V, H483Q, V517I, N519S, K530R; gp120: H57Y, -106A, -107K, -109D, -115N, -117G, -118N, -119M, -120T, -121D, -122E, -123V, -124R, E125-, Q142R, K143Q, Y145H, S161-, R164M, P210Q, I243V, I279V, V288A, R291G, E304K, G307R, A318V, E319G, K322R, -326K, N328E, K329-, I332V, Q334R, -368K, -369N, -370E, -371T, -372M, -375E, -376R, -377N, -378N, -379N, -380T, S412R, N414T, Q462E; gp41: N113D, I118T, N129D, Q130I, E133G, N160S, D163S, N166K, T210F, D230G, I266V, A267T, I309V, A310T, R324G; nef: G3S, A27T, I43V, C55S, G83A, S88G, I133V, E174D, H199R; p17: S9T, T81A, T84V, Q90R, V94I, K95A, I104L, Q113R, D121A; p2: V7T, -11A; p24: L15I, E71D, G116A, I124V, E128D, V148T, R154K, Y169F, E180D, E187D, K203R, T210S, L211I; p6: T8S, G18-, E19-, T21E, P25A, -26P, K33G, E34G, L35T, Y36-; p7: G4N, Q9F, I12T, L24I; pro: T12S, K14R, I15V, L19I, L63P, I93L; rev: Y28F, A37T, T68E, D84G, C85D, S112T; tat: T19K, S23N, Y47H, G57R, K63E, G83D; vif: L59I, K63R, R67K, D117E, K122R, R158K, T188S, M189T; vpr: Y15F; vpu: K35R, R47Q", "clade": "CRF96_cpx"}}, "children": [{"name": "MG518476", "node_attrs": {"div": 0.13329, "accession": "MG518476", "clade_membership": {"value": "CRF96_cpx"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "13YNBS54IDU"}, "LANL_subtype": {"value": "CRF96_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A492T", "T587C", "G614T", "G618A", "A620G", "C697G", "G749C", "C890T", "C1060G", "A1370C", "A1458G", "A1568G", "C1598T", "C1610T", "T1646C", "T1652C", "G1664A", "C1679T", "C1721T", "C1795T", "T1868C", "A1927G", "G2155A", "A2198G", "T2209C", "C2245T", "A2399C", "T2494C", "A2539G", "A2710G", "C2770T", "G2980A", "G3218A", "C3232T", "G3265A", "A3304G", "G3316A", "T3319C", "G3442A", "T3472G", "T3497C", "C3499T", "G3538A", "A3574G", "G3664A", "C3843T", "C3850T", "G3859A", "C3946T", "C3962T", "T3977G", "C3991T", "A4030G", "T4039G", "G4051A", "G4057A", "G4084A", "T4153A", "A4178G", "A4195G", "A4407G", "A4525G", "A4584T", "G4616T", "G4622A", "G4642A", "C4679A", "T4701G", "C4728A", "G4900A", "C4977A", "C4992T", "A5021C", "A5055G", "A5099G", "C5213T", "C5214T", "C5242T", "A5278G", "C5351A", "T5391C", "A5447G", "G5448C", "C5579T", "A5594G", "G5599A", "T5602A", "G5620C", "G5650A", "C5653T", "A5655T", "C5687T", "T5695A", "A5702G", "C5727T", "A5748G", "-5791G", "-5792A", "-5793T", "-5794G", "-5795A", "-5796A", "-5797T", "-5798T", "-5799G", "G5803A", "G5805A", "T5806C", "T5819G", "T5870A", "T5984C", "A6022G", "A6030G", "T6148C", "C6165G", "A6182G", "A6183T", "T6184G", "A6186C", "T6187C", "C6190T", "-6198A", "A6200G", "-6201A", "-6203A", "C6204T", "T6205A", "-6207A", "A6209C", "T6210A", "A6211T", "G6212A", "G6213T", "A6214C", "A6215C", "A6216C", "A6218G", "T6219A", "G6220A", "C6222T", "A6225G", "T6226A", "G6227A", "A6229T", "G6230A", "G6234A", "A6263C", "A6276C", "T6307G", "A6316G", "A6323G", "A6329G", "A6336C", "A6448G", "T6466A", "C6469T", "C6599A", "A6616G", "T6660C", "C6669T", "G6725A", "G6726A", "T6745C", "A6759T", "A6765C", "A6779C", "-7005A", "A7046C", "A7094G", "A7240G", "G7256A", "A7348C", "A7373C", "C7561T", "T7636C", "T7813C", "A7862G", "T7921C", "T7939A", "C7950T", "A8032T", "G8038T", "G8105A", "G8116A", "A8152G", "T8171C", "A8182C", "A8193G", "A8194G", "T8196G", "A8231G", "C8232T", "G8241A", "T8366C", "A8386G", "A8461G", "T8480C", "G8555A", "T8636A", "C8711T", "A8762G", "C8832T", "T8835C", "G8871C", "G8885A", "A8892G", "A8930C", "A8942G", "A8977G", "A9060T", "C9068T", "-9109G"], "INT": ["A23V", "L68V", "I135V", "K211R", "D270V", "V281L", "G283S"], "RT-p51": ["K102Q", "V375I"], "RT-p66": ["K102Q", "V375I", "S468P"], "gp120": ["L6M", "I56M", "E59G", "T104S", "N108L", "D109T", "-111N", "-112T", "-114N", "-116D", "G117I", "N118K", "M119H", "T120I", "D121P", "V123I", "R124G", "-125N", "K141T", "N159D", "-161T", "N204K", "L249I", "S272F", "G291K", "Y302F", "K304T", "K309Q", "-384D", "M398L", "T414A", "-433S", "N434T", "T436E", "N437T", "E438-", "T439-"], "gp41": ["I24L", "K172R", "I187V", "H212Q", "P216Q", "A268T", "K297R", "I298S", "T310V", "G313E"], "nef": ["Q15R", "H40R", "D98E", "Y120F", "D174E", "E177H", "K184E"], "p17": ["T53S", "E93D", "A95T", "A121G"], "p2": ["T7-", "-10A"], "p24": ["T110S", "E213D"], "p6": ["T35-", "T39I"], "pro": ["M89L"], "rev": ["S31T", "K39R", "I55L", "T62S", "E68A", "S86N", "G90R", "I102V", "V108A", "T112P", "N116E"], "tat": ["K24S", "P68L", "I77N", "P81N"], "vif": ["R19K", "K37E", "F39V", "H48N", "P136S", "K157E"], "vpr": ["P37F", "S96P"], "vpu": ["E5Q", "A15T", "L16F", "A27V", "F30I", "K32R", "M71R"]}, "labels": {"aa": "INT: A23V, L68V, I135V, K211R, D270V, V281L, G283S; RT-p51: K102Q, V375I; RT-p66: K102Q, V375I, S468P; gp120: L6M, I56M, E59G, T104S, N108L, D109T, -111N, -112T, -114N, -116D, G117I, N118K, M119H, T120I, D121P, V123I, R124G, -125N, K141T, N159D, -161T, N204K, L249I, S272F, G291K, Y302F, K304T, K309Q, -384D, M398L, T414A, -433S, N434T, T436E, N437T, E438-, T439-; gp41: I24L, K172R, I187V, H212Q, P216Q, A268T, K297R, I298S, T310V, G313E; nef: Q15R, H40R, D98E, Y120F, D174E, E177H, K184E; p17: T53S, E93D, A95T, A121G; p2: T7-, -10A; p24: T110S, E213D; p6: T35-, T39I; pro: M89L; rev: S31T, K39R, I55L, T62S, E68A, S86N, G90R, I102V, V108A, T112P, N116E; tat: K24S, P68L, I77N, P81N; vif: R19K, K37E, F39V, H48N, P136S, K157E; vpr: P37F, S96P; vpu: E5Q, A15T, L16F, A27V, F30I, K32R, M71R"}}}, {"name": "CRF96_cpx_NODE_0000001", "node_attrs": {"div": 0.11343, "clade_membership": {"value": "CRF96_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A1700C", "C1788A", "A2419C", "C5801A", "T5808G", "-5810C", "-5811C", "A7241C", "G7658C", "C8051A", "G8864T"], "gp120": ["H44Y", "I126-", "K127-", "L137I", "T269I", "I463L", "I468V"], "gp41": ["E119Q"], "p2": ["T8N", "N9-", "-12T"], "p6": ["P37-"], "rev": ["L64V"], "vif": ["Q105R"]}, "labels": {"aa": "gp120: H44Y, I126-, K127-, L137I, T269I, I463L, I468V; gp41: E119Q; p2: T8N, N9-, -12T; p6: P37-; rev: L64V; vif: Q105R"}}, "children": [{"name": "MG518477", "node_attrs": {"div": 0.1333, "accession": "MG518477", "clade_membership": {"value": "CRF96_cpx"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "13YNBS66IDU"}, "LANL_subtype": {"value": "CRF96_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A509G", "A562G", "G576A", "T596G", "G607A", "C771T", "C773A", "A774T", "G935A", "G1049A", "A1256G", "T1491G", "G1503A", "A1536C", "C1571T", "A1622G", "A1644G", "C1676T", "C1748T", "A1771G", "G1839A", "C1867T", "G1916C", "A1920G", "A1926G", "G1941T", "C1985A", "G1991A", "A1992G", "A2182G", "A2198T", "A2459G", "G2518A", "A2710C", "C2924A", "A2937G", "A2974G", "C2975A", "A3027G", "A3116G", "G3168A", "A3196G", "C3201T", "G3217A", "G3221A", "A3644G", "A3874T", "C4138T", "G4263T", "A4271C", "G4560A", "G4563A", "G4677A", "A4696G", "A4786G", "A4878G", "C4925A", "T4972G", "C4977A", "A5000C", "A5049G", "C5050A", "T5171C", "G5176A", "A5186C", "G5257A", "T5293G", "G5375A", "T5436C", "A5444G", "C5478T", "C5515T", "G5556A", "T5602C", "A5622T", "C5687G", "G5711A", "G5754A", "G5775A", "-5809G", "C5834A", "T5851G", "C5974T", "A6008C", "G6088A", "T6154C", "G6167A", "T6170G", "T6171C", "G6172T", "C6174A", "C6175G", "C6177T", "T6178A", "A6179G", "A6180C", "C6189G", "C6196A", "A6197G", "-6198G", "-6201T", "-6203T", "-6207T", "A6209G", "T6244C", "A6276T", "C6281A", "C6317T", "A6320C", "A6375G", "A6425G", "T6460G", "A6471C", "A6478T", "C6482G", "T6562C", "A6605G", "C6612T", "A6638G", "T6643G", "G6647C", "A6734G", "T6735A", "A6736C", "T6747C", "A6767G", "A6771G", "A6779G", "G6788A", "A6791G", "A6797G", "G6848A", "G6963A", "-7005A", "G7033A", "T7107A", "A7151-", "G7152-", "T7153-", "C7155A", "A7156T", "A7158G", "G7160A", "A7161C", "G7162A", "C7164G", "C7165T", "-7166G", "-7167A", "-7168G", "-7169A", "-7170C", "-7171C", "G7276A", "G7384A", "A7456G", "A7463C", "T7562C", "G7640A", "C7706A", "A7753G", "G7782A", "A7796T", "T7825C", "A7859C", "G7885A", "A7957G", "G7964A", "G7977A", "G8006A", "G8008A", "A8023G", "A8032G", "G8055A", "A8069T", "A8128G", "C8129A", "C8131A", "A8132C", "A8184G", "A8191G", "C8223T", "G8239A", "G8274C", "A8288C", "A8386C", "A8471G", "G8508A", "G8660A", "A8732G", "A8750C", "C8828T", "A8859G", "G8917A", "T9017C", "-9109G"], "INT": ["G163V", "R262K", "R263K"], "RT-p51": ["V35L", "K122E", "Q277K", "K281R", "P294T", "K311R", "I341V", "R358K", "A369V", "A376T"], "RT-p66": ["V35L", "K122E", "Q277K", "K281R", "P294T", "K311R", "I341V", "R358K", "A369V", "A376T", "I517V"], "gp120": ["N52H", "D105N", "-111K", "-112G", "N113I", "-114S", "N115I", "-116V", "K141M", "Q143K", "P155-", "I156-", "D157-", "N158-", "N159-", "N160-", "K174R", "T191A", "D202E", "N206T", "Q210E", "N251D", "A253V", "K262E", "E265Q", "I298T", "I305V", "N306S", "K309E", "E312K", "T313A", "K315E", "V332I", "-384D", "V418E", "N435S", "N437S"], "gp41": ["M54L", "C87R", "D113N", "L135I", "S160N", "T165S", "K172R", "I186L", "G221R", "G225E", "V235I", "S251N", "S256C", "Q294R", "T307I", "G324A", "I329L"], "nef": ["Q15P", "V56I", "Y120F", "M173V", "E177D", "R192K"], "p1": ["I5V"], "p17": ["K76R", "A81T", "C87W", "R91K"], "p24": ["P14S", "I15L", "M68I"], "p6": ["K31R"], "p7": ["F9V", "V13I", "I24L"], "pro": ["R14K", "G40R", "K41R", "K43R", "G48V", "P63T", "E65R", "M89L"], "rev": ["R14K", "T37A", "R53H", "A54T", "I55L", "I59V", "T62A", "Q74L", "T94E", "Q95T", "K115E"], "tat": ["N23S", "H47Y", "D83G"], "vif": ["V31I", "K37G", "K67R", "I98V", "D113E", "V129G", "T155E"], "vpr": ["N28H", "I63M"], "vpu": ["E5D", "A27G", "R35K", "P76H", "L82V"]}, "labels": {"aa": "INT: G163V, R262K, R263K; RT-p51: V35L, K122E, Q277K, K281R, P294T, K311R, I341V, R358K, A369V, A376T; RT-p66: V35L, K122E, Q277K, K281R, P294T, K311R, I341V, R358K, A369V, A376T, I517V; gp120: N52H, D105N, -111K, -112G, N113I, -114S, N115I, -116V, K141M, Q143K, P155-, I156-, D157-, N158-, N159-, N160-, K174R, T191A, D202E, N206T, Q210E, N251D, A253V, K262E, E265Q, I298T, I305V, N306S, K309E, E312K, T313A, K315E, V332I, -384D, V418E, N435S, N437S; gp41: M54L, C87R, D113N, L135I, S160N, T165S, K172R, I186L, G221R, G225E, V235I, S251N, S256C, Q294R, T307I, G324A, I329L; nef: Q15P, V56I, Y120F, M173V, E177D, R192K; p1: I5V; p17: K76R, A81T, C87W, R91K; p24: P14S, I15L, M68I; p6: K31R; p7: F9V, V13I, I24L; pro: R14K, G40R, K41R, K43R, G48V, P63T, E65R, M89L; rev: R14K, T37A, R53H, A54T, I55L, I59V, T62A, Q74L, T94E, Q95T, K115E; tat: N23S, H47Y, D83G; vif: V31I, K37G, K67R, I98V, D113E, V129G, T155E; vpr: N28H, I63M; vpu: E5D, A27G, R35K, P76H, L82V"}}}, {"name": "KF850149", "node_attrs": {"div": 0.12965, "accession": "KF850149", "clade_membership": {"value": "CRF96_cpx"}, "country": {"value": "CN"}, "date": {"value": 2010.0}, "Strain_name": {"value": "JL.RF01"}, "LANL_subtype": {"value": "CRF96_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G604A", "C645A", "C668A", "G822T", "T1052G", "T1229C", "G1489A", "C1501T", "G1543A", "A1709G", "G1739A", "A1743C", "G1764A", "A1766C", "A1804G", "G1841A", "A1853G", "A1918G", "T2024C", "A2038G", "A2059G", "C2063A", "C2149T", "A2233G", "T2299G", "A2410C", "A2416T", "A2627G", "G2630A", "G2660A", "A2699G", "A2727G", "C2831T", "G2951A", "G3004A", "C3056T", "T3187G", "T3197C", "G3208A", "T3358C", "T3469A", "A3643G", "G3756A", "A3764C", "G3772A", "A3814G", "T3943C", "T4024C", "A4189G", "C4318T", "A4384G", "G4695A", "G4856A", "C4911T", "T4973A", "C5006T", "G5066A", "T5237C", "G5312A", "C5384T", "C5406T", "T5451C", "G5535A", "G5563A", "T5582C", "A5644G", "G5699A", "-5809G", "G5864A", "A5938G", "G5956A", "T6023C", "A6024C", "G6092A", "C6110G", "A6159G", "A6194G", "-6198C", "T6199A", "-6201C", "-6203G", "-6207G", "G6550A", "A6638C", "A6640T", "T6641A", "G6647A", "A6649T", "A6654C", "A6679G", "C6684A", "A6752C", "A6773G", "T6807C", "G6839A", "A6856C", "T6876C", "A6983G", "C6991G", "-6995G", "-6996A", "-6997G", "G7004-", "C7006-", "C7008T", "T7009C", "T7059C", "G7089A", "A7094T", "C7095T", "G7106A", "T7107C", "A7151G", "A7255G", "G7291A", "A7461G", "G7508A", "T7625C", "A7626T", "A7698T", "G7701A", "G7769A", "G7818A", "T7919C", "T7931A", "T7939G", "C8009A", "C8011A", "C8037T", "T8047C", "A8173G", "T8196C", "G8216A", "G8219A", "G8228A", "C8306A", "T8320C", "T8431C", "T8504C", "A8536G", "A8584T", "C8590G", "T8687C", "T8701A", "A8798C", "C8873A", "C8957T"], "INT": ["I203M"], "RT-p51": ["V35I", "M178V", "V179I", "V189I", "I202V", "K211R", "A286T", "P321S", "D364E"], "RT-p66": ["V35I", "M178V", "V179I", "V189I", "I202V", "K211R", "A286T", "P321S", "D364E", "S554N"], "gp120": ["D4N", "Y57P", "V80I", "Q86E", "N102S", "-111T", "-112A", "-114I", "-116S", "D157N", "N158G", "-161N", "S162N", "K262H", "S263T", "E265N", "N267T", "T277K", "K300Q", "R307G", "V318A", "E328-", "-329K", "R334S", "L341P", "N377D", "N379K", "-381E", "-382I", "T385-", "V402A", "R412K", "T414L", "V418T", "N432H", "N435G"], "gp41": ["H53R", "V69I", "Y108L", "Y132F", "G133D", "A156T", "F206L", "F210I", "H212Q", "A245V", "R277S", "I298T", "D305N", "A306T", "V309I"], "nef": ["V30A", "E64D", "Y81F", "A83G", "E152D"], "p17": ["R90Q", "L104I", "S111R"], "p24": ["A31S"], "p6": ["T22P", "E29N", "K42R"], "p7": ["G8D", "T12I", "R26K"], "pro": ["V15I", "I19V"], "rev": ["S7N", "Y23H", "F28Y", "S31A", "K39R", "A54E", "S67P", "I109V"], "tat": ["P3E", "E63K", "I69T", "I77S"], "vif": ["S131R"], "vpr": ["Y45H", "V70I"], "vpu": ["I13V", "R31K"]}, "labels": {"aa": "INT: I203M; RT-p51: V35I, M178V, V179I, V189I, I202V, K211R, A286T, P321S, D364E; RT-p66: V35I, M178V, V179I, V189I, I202V, K211R, A286T, P321S, D364E, S554N; gp120: D4N, Y57P, V80I, Q86E, N102S, -111T, -112A, -114I, -116S, D157N, N158G, -161N, S162N, K262H, S263T, E265N, N267T, T277K, K300Q, R307G, V318A, E328-, -329K, R334S, L341P, N377D, N379K, -381E, -382I, T385-, V402A, R412K, T414L, V418T, N432H, N435G; gp41: H53R, V69I, Y108L, Y132F, G133D, A156T, F206L, F210I, H212Q, A245V, R277S, I298T, D305N, A306T, V309I; nef: V30A, E64D, Y81F, A83G, E152D; p17: R90Q, L104I, S111R; p24: A31S; p6: T22P, E29N, K42R; p7: G8D, T12I, R26K; pro: V15I, I19V; rev: S7N, Y23H, F28Y, S31A, K39R, A54E, S67P, I109V; tat: P3E, E63K, I69T, I77S; vif: S131R; vpr: Y45H, V70I; vpu: I13V, R31K"}}}]}]}, {"name": "NODE_0000665", "node_attrs": {"div": 0.08506999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T24-", "A101G", "T118G", "G119T", "G121A", "T122G", "A774T", "C926A", "T1271G", "C1316T", "T1646C", "G1852A", "T2302C", "A2332G", "A2350G", "G2392T", "G2422A", "T2431A", "G2462A", "A2463G", "G2470A", "T2485C", "G2518A", "A2727G", "G2728C", "A3010G", "A3080G", "A3097G", "A3160C", "C3303T", "A3304G", "C3346T", "A3435G", "T3469C", "A3715G", "A3718G", "A3755T", "T3757A", "A3769G", "A3787G", "A3816G", "G3836A", "C3857T", "A3877G", "G3891A", "G3907A", "A3952G", "T3970C", "T3977C", "A3989G", "A4012G", "A4063G", "A4078G", "T4117C", "T4144C", "G4156A", "A4174C", "G4175A", "G4176A", "A4178G", "A4182G", "T4198C", "A4243G", "G4677A", "C4754T", "A5065G", "A6195G", "-6212A", "-6213T", "-6218G", "-6219A", "A6263C", "A6392G", "A6605G", "A6779G", "-7162T", "A7534G", "T7932C", "G7964A", "A8516G"], "INT": ["K14R", "A21T", "S39N", "I72V", "G134N", "I135V", "Q136R"], "RT-p51": ["D123S", "K211S", "I329V", "T403M"], "RT-p66": ["D123S", "K211S", "I329V", "T403M", "N447S"], "gp120": ["N113-", "I126V", "I180V", "N251D", "K309E", "W367-"], "gp41": ["G221R"], "p17": ["E107V"], "vif": ["V31I", "S131R", "K160R"]}, "labels": {"aa": "INT: K14R, A21T, S39N, I72V, G134N, I135V, Q136R; RT-p51: D123S, K211S, I329V, T403M; RT-p66: D123S, K211S, I329V, T403M, N447S; gp120: N113-, I126V, I180V, N251D, K309E, W367-; gp41: G221R; p17: E107V; vif: V31I, S131R, K160R"}}, "children": [{"name": "results/subtype_trees/CRF97_01B.nwk", "node_attrs": {"div": 0.12387, "clade_membership": {"value": "CRF97_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G112A", "T156G", "-161T", "-162G", "-163A", "-164G", "-165T", "-166A", "-217A", "A263G", "A388G", "A410T", "A412G", "G413A", "A416G", "T435A", "G458A", "C471G", "T531C", "A548C", "A562G", "G654C", "A659G", "A752G", "C771G", "T774C", "T827C", "T852A", "A944G", "T978C", "A986C", "T992G", "G1019A", "G1078C", "G1109A", "A1112G", "C1115A", "T1148C", "G1173A", "T1174C", "C1178T", "T1182C", "G1199A", "A1208G", "T1229C", "A1263T", "C1331T", "G1354C", "T1403C", "A1404G", "C1406A", "G1419A", "G1424A", "G1430A", "A1450G", "-1452C", "-1456C", "-1458A", "-1459C", "-1460C", "A1464C", "G1488A", "G1489A", "G1493A", "G1498A", "A1499G", "-1503G", "-1504T", "-1505T", "C1517T", "C1541T", "G1543A", "A1643G", "C1693T", "A1709G", "C1714A", "-1730T", "C1741T", "-1748T", "T1752C", "C1756A", "A1762C", "A1771T", "-1783T", "-1784G", "-1785T", "-1786A", "A1819G", "T1828C", "A1840G", "A1849G", "C1853T", "A1918G", "T1954C", "A1972G", "T1987C", "T1996C", "A2003C", "A2005T", "G2008A", "T2013C", "A2023G", "A2063C", "T2080C", "T2158C", "A2182G", "A2198G", "G2224A", "G2293A", "A2629G", "C2635A", "G2682A", "C2694T", "A2710G", "C2720T", "T2737C", "G2821A", "T2890C", "C2968A", "A2969G", "C2978T", "C3023T", "G3127A", "A3200G", "A3277G", "G3340A", "G3463A", "T3730C", "G3772A", "C3922A", "A3931G", "T3967C", "C4132T", "C4204T", "T4234C", "A4253C", "C4265A", "T4276C", "C4396T", "C4534G", "T4543C", "A4555G", "A4650C", "G4708A", "A4773G", "A4811G", "C4826A", "A4864C", "G4870A", "A4916C", "T4991C", "A5112G", "G5128A", "A5148C", "A5246G", "A5268C", "G5272A", "T5275A", "T5281C", "A5282C", "T5293A", "T5294C", "C5303T", "A5305G", "C5306T", "G5312A", "G5330A", "A5355G", "G5375A", "G5385A", "G5418A", "C5432A", "G5444A", "C5445T", "G5448C", "C5482A", "A5560C", "A5563G", "A5575G", "A5611T", "A5655G", "G5699A", "C5707T", "G5730A", "T5731C", "T5851G", "T5884C", "G5972A", "C6023T", "A6024T", "G6029A", "A6060G", "C6067A", "-6170A", "-6172T", "-6174T", "A6186C", "T6187A", "C6190A", "-6201G", "-6222A", "T6244C", "T6252C", "T6325A", "A6333G", "A6338G", "G6451A", "A6464G", "A6520G", "G6547A", "A6589G", "A6734G", "T6735A", "A6767G", "A6789G", "A6791G", "C6792T", "C6860T", "C6862T", "A6935C", "A6947T", "T6949C", "T6952A", "T6953-", "G6954-", "-6962A", "-6965A", "-6966A", "-6967A", "-6977G", "-6978A", "-6979A", "A6992-", "-6998G", "-6999G", "-7000C", "-7001A", "-7002A", "-7003T", "-7005A", "G7027A", "G7033A", "A7088G", "G7089A", "T7090G", "A7101G", "G7106A", "A7108T", "A7113G", "T7114C", "T7130C", "A7148G", "A7149T", "A7158C", "G7198A", "G7293T", "T7408G", "G7456A", "T7462C", "G7589A", "T7604A", "C7605A", "C7606A", "T7609C", "A7626T", "G7640A", "A7672G", "T7681C", "C7691A", "A7692C", "T7715G", "G7717A", "T7747G", "T7748C", "A7885G", "C7926T", "T7930C", "A7931T", "A7935C", "G7992A", "G8019C", "C8092A", "A8093C", "G8105A", "G8130T", "T8164C", "G8170A", "T8171G", "T8182C", "A8236C", "A8248G", "A8271T", "A8284G", "G8393A", "A8400T", "G8404A", "G8469A", "T8507C", "G8508A", "T8509C", "C8510T", "A8540G", "C8543T", "C8552T", "G8555A", "G8558T", "T8567G", "C8568T", "T8585C", "G8588A", "T8595C", "T8603C", "T8607C", "T8608A", "A8652C", "A8663G", "A8678G", "T8687C", "T8701A", "A8717G", "C8723T", "G8738A", "T8740C", "T8754A", "G8755C", "T8756C", "C8789G", "A8793G", "A8795T", "G8796-", "A8797-", "A8798-", "G8799-", "T8800-", "A8801-", "G8802-", "A8803-", "G8804-", "G8805-", "A8806-", "G8807-", "G8808-", "A8809-", "C8810-", "A8811-", "A8812-", "C8813-", "A8814C", "G8818A", "A8822G", "A8827G", "C8832T", "G8834A", "C8843T", "A8858G", "A8859G", "G8864T", "G8868C", "A8869T", "A8870G", "G8875A", "G8882A", "C8883T", "G8885A", "C8905G", "C8913T", "G8914T", "A8915T", "A8916C", "G8917A", "A8918T", "A8924G", "C8928A", "A8933G", "C8934A", "T8935A", "A8947T", "C8948T", "A8966G", "G8971C", "A8978C", "C8979A", "T8980A", "G9027A", "T9028C", "C9039T", "A9062G"], "INT": ["K160Q", "Q164K", "D253E"], "RT-p51": ["G196E", "T200I", "D291E", "I292V", "T369A"], "RT-p66": ["G196E", "D291E", "I292V", "T369A"], "gp120": ["V40I", "H57F", "K69R", "N71K", "D157E", "N160S", "S162-", "I305V", "E312G", "T313V", "P336S", "K361Q", "S365C", "-370T", "-371K", "-375E", "-384D", "S412E", "N414K", "N416S", "V418N", "N420S", "N432V", "R480I"], "gp41": ["M54L", "A96N", "S101K", "Y108F", "Q130T", "S138A", "D148E", "T208I", "T210S", "H211P", "S239T", "F263L", "I264L", "A268T", "L290V", "Q323L"], "nef": ["R21K", "V56T", "F85L", "F89H", "K104Q", "I133T", "C138T", "D149E", "K151D", "E152Q", "V153E", "E155-", "D156-", "N157-", "K158-", "G159-", "E160-", "N162S", "M173V", "E174D", "E176L", "R178K", "S188R", "R191F", "R192H", "I194M", "L198K", "Y202F"], "p17": ["K18R", "K26R", "L46V", "S66P", "K76R", "V107L"], "p2": ["N9S", "-10P", "-11A", "-12T", "M14L"], "p24": ["P14A", "S41T", "H87Q", "M96I", "G116A", "V148T", "T178S", "G208A", "S225G", "V230I"], "p6": ["P5L", "A12E", "T21I", "-26Q", "Q28P", "K31I", "T39A", "N47S", "L50S"], "p7": ["G8N", "R11K", "L24I", "R26K"], "pro": ["L63P", "K69H", "I72T"], "rev": ["Y28L", "H82T", "S86N", "S106P", "V108S", "S112P"], "tat": ["T19K", "S23N", "K24N", "L36I", "S62R", "K63E", "N67D", "P73S", "L74P", "I76L"], "vif": ["N22H", "R41K", "K63E", "H80Q", "K93T", "S95N", "Q110H", "D117E", "K176E", "R181K", "T188P"], "vpr": ["Q3R", "Y15S", "N48D", "E55A", "I60L", "V70I", "F72Y", "I84V", "G94S"], "vpu": ["R31K", "L82V"]}, "labels": {"aa": "INT: K160Q, Q164K, D253E; RT-p51: G196E, T200I, D291E, I292V, T369A; RT-p66: G196E, D291E, I292V, T369A; gp120: V40I, H57F, K69R, N71K, D157E, N160S, S162-, I305V, E312G, T313V, P336S, K361Q, S365C, -370T, -371K, -375E, -384D, S412E, N414K, N416S, V418N, N420S, N432V, R480I; gp41: M54L, A96N, S101K, Y108F, Q130T, S138A, D148E, T208I, T210S, H211P, S239T, F263L, I264L, A268T, L290V, Q323L; nef: R21K, V56T, F85L, F89H, K104Q, I133T, C138T, D149E, K151D, E152Q, V153E, E155-, D156-, N157-, K158-, G159-, E160-, N162S, M173V, E174D, E176L, R178K, S188R, R191F, R192H, I194M, L198K, Y202F; p17: K18R, K26R, L46V, S66P, K76R, V107L; p2: N9S, -10P, -11A, -12T, M14L; p24: P14A, S41T, H87Q, M96I, G116A, V148T, T178S, G208A, S225G, V230I; p6: P5L, A12E, T21I, -26Q, Q28P, K31I, T39A, N47S, L50S; p7: G8N, R11K, L24I, R26K; pro: L63P, K69H, I72T; rev: Y28L, H82T, S86N, S106P, V108S, S112P; tat: T19K, S23N, K24N, L36I, S62R, K63E, N67D, P73S, L74P, I76L; vif: N22H, R41K, K63E, H80Q, K93T, S95N, Q110H, D117E, K176E, R181K, T188P; vpr: Q3R, Y15S, N48D, E55A, I60L, V70I, F72Y, I84V, G94S; vpu: R31K, L82V", "clade": "CRF97_01B"}}, "children": [{"name": "MG760379", "node_attrs": {"div": 0.15154, "accession": "MG760379", "clade_membership": {"value": "CRF97_01B"}, "country": {"value": "LA"}, "date": {"value": 2012.0}, "Strain_name": {"value": "BL50F5250"}, "LANL_subtype": {"value": "CRF97_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G202T", "C207T", "G256A", "A435C", "T506C", "C583T", "G608A", "G706A", "C707T", "A711G", "A815G", "C902T", "T1003A", "C1009A", "A1017C", "A1089C", "G1090A", "A1106G", "G1159A", "G1184A", "G1192A", "G1197A", "G1206A", "G1216A", "G1231A", "G1249A", "T1262G", "G1269A", "G1271A", "G1301A", "G1347A", "G1365A", "G1373A", "G1376A", "G1388A", "G1389A", "G1390A", "G1394A", "G1396A", "G1398A", "G1417A", "G1436A", "A1458G", "G1519A", "G1521A", "G1530A", "G1552A", "G1561A", "G1562A", "G1568A", "G1584A", "G1589A", "G1617A", "G1619A", "G1638A", "G1639A", "C1650T", "T1653C", "G1671A", "G1672A", "A1691C", "G1695A", "G1726A", "G1733A", "G1737A", "T1741A", "G1763A", "T1873C", "A1927G", "A2174T", "C2302A", "T2392G", "G2426A", "G2428A", "G2507A", "G2516A", "G2523A", "G2548A", "G2549A", "G2558A", "A2560G", "A2566G", "G2600A", "G2610A", "A2611G", "T2631C", "A2676C", "G2926A", "A3028G", "C3030A", "C3031G", "A3061G", "T3068C", "A3154G", "A3224C", "C3225T", "G3556A", "A3607G", "A3727G", "G3769A", "C3773T", "T3844C", "T3946C", "G4063A", "A4084G", "C4144T", "C4146G", "G4243A", "C4318T", "G4335A", "A4336G", "A4611G", "T4672A", "A4695G", "G4697A", "A4900G", "C4937A", "G5036A", "G5114A", "C5116T", "G5212A", "A5290G", "T5319A", "A5462T", "A5570G", "G5620C", "C5678T", "T5679C", "A5702G", "C5713G", "A5746G", "G5747C", "A5817G", "G5839A", "T5852A", "T5953G", "A6167C", "T6171A", "A6173G", "A6177C", "T6178C", "G6179T", "T6181A", "C6183A", "G6195C", "C6196-", "-6198G", "T6199C", "G6201A", "-6202A", "-6203G", "-6204A", "-6205C", "-6207G", "-6208C", "T6210G", "-6211A", "T6213A", "A6215C", "-6216T", "-6217T", "G6218A", "-6220C", "-6225G", "-6226A", "-6229A", "-6230G", "C6263A", "A6326G", "T6328A", "A6335G", "T6337G", "G6338-", "A6339-", "T6433G", "G6442A", "T6466G", "A6576G", "A6648G", "C6669T", "T6690C", "A6736T", "G6773A", "A6799T", "A6819G", "C6843A", "A6844T", "T6849C", "C6854A", "T6860G", "A6937G", "-6953G", "-6954T", "-6955A", "-6956A", "-6957A", "-6958T", "-6959G", "-6960A", "-6961T", "-6963C", "-6964C", "A6967G", "A6979G", "-6980G", "-6981G", "-6982A", "-6983T", "-6984G", "-6985C", "-6986A", "-6987A", "-6988T", "A7005G", "C7024T", "T7107A", "A7129G", "T7159A", "A7163-", "C7165-", "C7238G", "A7275G", "G7289A", "C7460A", "C7590A", "A7621G", "A7630T", "G7633C", "T7656C", "A7701G", "G7720A", "T7843C", "T7920C", "T7931C", "C7932T", "C7960A", "A7962G", "G7977A", "G8006A", "G8008T", "C8019A", "A8111G", "T8167C", "T8172C", "A8191G", "T8205C", "T8209C", "G8216A", "G8219A", "T8271G", "G8304C", "G8324C", "A8327G", "A8364C", "T8389C", "T8414C", "A8484T", "T8504G", "G8528A", "A8587G", "A8617G", "T8711C", "C8720T", "G8732A", "A8735G", "A8819G", "C8960T", "T8974G", "-8988T", "G9030A"], "INT": ["A124G", "R187K", "D279G"], "RT-p51": ["T27S", "V111I", "E138K", "G141R", "R143K", "G152R", "G155R", "E169K", "R172K", "V179A", "E194A", "T312K", "T377L"], "RT-p66": ["T27S", "V111I", "E138K", "G141R", "R143K", "G152R", "G155R", "E169K", "R172K", "V179A", "E194A", "T200I", "T312K", "T377L"], "gp120": ["H33Q", "E59K", "D105H", "-106N", "-107V", "-109T", "-111N", "-112T", "V126E", "K127V", "M133T", "L137I", "N158E", "S161E", "N204E", "E241G", "E265G", "S272F", "I279T", "H280R", "G307R", "K315N", "K322R", "N327-", "T330N", "I332T", "Q334K", "S336A", "-367V", "-368N", "-369D", "-376G", "-377C", "-378N", "-382G", "-383N", "D384G", "Q462E", "K474R", "E479K"], "gp41": ["H53N", "E109D", "E110D", "I118T", "E133G", "F206S", "S210L", "E220G", "G225E", "V235I", "T239N", "T270A", "V290A", "I301T", "D305N", "A306T", "L323R", "R334T", "E341Q", "R342G"], "nef": ["S8R", "V16A", "I20L", "M48L", "D54E", "K82R", "K92R"], "p1": ["G3K", "P7S", "S8P", "G14K"], "p17": ["A83V", "S124N", "S126G"], "p2": ["M4I", "T12A"], "p24": ["I91N", "P93Q", "I96L", "S120H", "R143K", "R154K", "G156R", "E159K", "R162K", "R167Q", "R173K", "E180K", "G206R", "E212K", "M214I", "M215I", "G220K", "G222E", "G223R", "R229K"], "p6": ["E6K", "R16K", "E20K", "I21K"], "p7": ["C18Y", "G19S", "G22R", "R29K", "R32K", "G40R", "E51K"], "pro": ["M89L"], "rev": ["I19V", "L28P", "R53H", "A54S", "D88G", "S107P", "K115E"], "tat": ["K29I", "H65R", "P84Q", "K85E"], "vif": ["I9V", "M29K", "K37E", "Q105R", "P177L"], "vpr": ["A4T"], "vpu": ["T2S", "E5Q", "T24I", "K32R", "Q36E", "R47A", "V78I", "V82E"]}, "labels": {"aa": "INT: A124G, R187K, D279G; RT-p51: T27S, V111I, E138K, G141R, R143K, G152R, G155R, E169K, R172K, V179A, E194A, T312K, T377L; RT-p66: T27S, V111I, E138K, G141R, R143K, G152R, G155R, E169K, R172K, V179A, E194A, T200I, T312K, T377L; gp120: H33Q, E59K, D105H, -106N, -107V, -109T, -111N, -112T, V126E, K127V, M133T, L137I, N158E, S161E, N204E, E241G, E265G, S272F, I279T, H280R, G307R, K315N, K322R, N327-, T330N, I332T, Q334K, S336A, -367V, -368N, -369D, -376G, -377C, -378N, -382G, -383N, D384G, Q462E, K474R, E479K; gp41: H53N, E109D, E110D, I118T, E133G, F206S, S210L, E220G, G225E, V235I, T239N, T270A, V290A, I301T, D305N, A306T, L323R, R334T, E341Q, R342G; nef: S8R, V16A, I20L, M48L, D54E, K82R, K92R; p1: G3K, P7S, S8P, G14K; p17: A83V, S124N, S126G; p2: M4I, T12A; p24: I91N, P93Q, I96L, S120H, R143K, R154K, G156R, E159K, R162K, R167Q, R173K, E180K, G206R, E212K, M214I, M215I, G220K, G222E, G223R, R229K; p6: E6K, R16K, E20K, I21K; p7: C18Y, G19S, G22R, R29K, R32K, G40R, E51K; pro: M89L; rev: I19V, L28P, R53H, A54S, D88G, S107P, K115E; tat: K29I, H65R, P84Q, K85E; vif: I9V, M29K, K37E, Q105R, P177L; vpr: A4T; vpu: T2S, E5Q, T24I, K32R, Q36E, R47A, V78I, V82E"}}}, {"name": "CRF97_01B_NODE_0000001", "node_attrs": {"div": 0.12793, "clade_membership": {"value": "CRF97_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T213C", "T214G", "T362C", "A534T", "A1205G", "A1495G", "A1565G", "C1615T", "T2095C", "C2596T", "A2616G", "A5781G", "T6072C", "C6483T", "A6489G", "A6753G", "G6764A", "A6810G", "-6833A", "-6834A", "-6969G", "-6970G", "-6971A", "-6996A", "-6997T", "G7026A", "T7162A", "-7164A", "A7256G", "T7682C", "C8202T", "C8213T", "T8676C", "A8746T", "G8846A"], "RT-p51": ["K174R"], "RT-p66": ["K174R"], "gp120": ["V73A", "P210L", "K212R", "D294E", "K300R", "E304K", "E319G", "R391K", "-433N", "I468V"], "gp41": ["Y127H", "A300V", "L304F"], "nef": ["Y135F", "M168I"], "p17": ["L34I", "T67S"], "p7": ["K10R", "T50I"], "rev": ["E57D"]}, "labels": {"aa": "RT-p51: K174R; RT-p66: K174R; gp120: V73A, P210L, K212R, D294E, K300R, E304K, E319G, R391K, -433N, I468V; gp41: Y127H, A300V, L304F; nef: Y135F, M168I; p17: L34I, T67S; p7: K10R, T50I; rev: E57D"}}, "children": [{"name": "MG760399", "node_attrs": {"div": 0.14748999999999998, "accession": "MG760399", "clade_membership": {"value": "CRF97_01B"}, "country": {"value": "LA"}, "date": {"value": 2011.0}, "Strain_name": {"value": "VI29M2888"}, "LANL_subtype": {"value": "CRF97_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G50A", "C160T", "G263A", "G388A", "A398G", "G412A", "A426C", "G607A", "T636C", "T662G", "C765T", "A1002G", "T1063C", "A1173G", "C1174T", "A1217G", "A1327G", "A1346G", "T1385C", "A1397G", "T1501C", "G1532A", "A1614G", "T1693C", "G1769A", "T1790C", "C1865T", "A1982G", "A2075C", "T2365C", "G2580A", "G2630A", "T2694C", "G2710A", "A2722G", "T2779C", "A2788G", "C2848T", "G2984A", "C3006A", "C3031A", "G3071A", "C3222T", "A3251G", "G3307T", "C3376T", "C3542T", "T3779C", "G3916A", "C3967T", "T4039G", "A4102C", "G4145A", "C4146A", "C4276A", "A4495G", "C4543A", "C4652T", "G4805A", "A4806C", "C4937A", "A4988G", "T5084C", "C5148T", "G5258A", "G5267A", "T5319A", "C5454T", "C5491T", "A5495C", "G5556A", "A5557C", "T5611A", "G5619A", "C5687G", "A5699G", "C5756A", "G5856A", "A5945C", "G5954A", "A6022G", "A6029G", "G6076A", "A6159C", "C6166T", "T6169C", "T6172G", "G6179A", "T6180C", "A6182T", "C6186G", "A6187T", "A6190T", "A6192G", "T6193A", "A6194T", "C6196T", "-6198T", "A6206-", "-6211G", "A6214T", "A6215T", "-6216A", "-6217G", "-6220A", "A6222T", "-6225A", "-6226T", "-6229C", "-6230T", "A6236G", "T6247C", "A6249G", "G6253T", "A6262T", "G6267C", "A6273T", "G6277A", "G6280T", "A6282C", "T6299G", "A6303T", "C6317G", "A6320T", "A6324G", "A6325T", "A6327C", "T6328A", "T6331A", "G6333T", "T6334A", "A6339G", "-6340C", "T6341A", "G6346T", "T6347A", "A6349G", "G6380C", "G6464A", "G6480C", "A6514C", "A6535T", "C6669A", "C6684A", "A6689G", "T6758C", "A6765G", "A6818G", "A6820G", "G6823A", "-6835G", "T6838C", "C6864T", "C6935A", "-6955G", "-6956T", "-6957A", "-6958A", "-6959A", "-6960T", "-6961G", "-6963A", "-6964A", "A6966C", "-6968G", "-6972G", "-6973G", "-6974G", "-6975A", "-6976T", "A6978T", "A7002G", "A7007C", "G7056A", "A7094G", "T7107A", "C7127T", "C7158G", "A7161C", "C7165T", "G7182A", "G7269A", "T7293G", "T7411C", "G7534A", "C7590A", "A7620G", "G7702A", "G7750A", "A7782C", "T7783A", "A7800G", "A7818G", "T7939A", "C8005A", "A8011C", "C8033A", "C8037T", "C8106A", "G8255A", "C8382T", "T8400A", "A8404G", "C8406A", "A8407G", "G8479C", "T8505A", "A8531G", "C8688A", "G8793A", "T8795A", "-8796G", "-8797A", "-8798A", "-8799G", "-8800C", "-8801A", "-8802G", "-8803A", "-8804G", "-8805G", "-8806A", "-8807G", "-8808A", "-8809A", "-8810C", "-8811A", "-8812G", "-8813C", "C8814A", "G8822A", "T8923C", "G8924A", "G8929A", "G8936A"], "INT": ["A124N", "D167E", "D256E"], "RT-p51": ["S162N", "V179I", "I200T", "E297K", "A304E", "V326I", "A376V", "T386A", "E404D"], "RT-p66": ["S162N", "V179I", "E297K", "A304E", "V326I", "A376V", "T386A", "E404D", "H483Y"], "gp120": ["S1N", "K31Q", "E34K", "I56M", "N102T", "D105K", "-106A", "-109M", "T110I", "-111N", "V126A", "K127D", "N128D", "N132S", "M133T", "E136D", "R138T", "K140M", "Q142H", "K143T", "Y149D", "K150M", "V154I", "P155N", "I156G", "E157D", "N159S", "S160M", "S161I", "-162N", "Y163-", "R164-", "L165-", "I166-", "N167-", "A176P", "G209A", "S272Y", "T277K", "I279V", "H280R", "Y302H", "K304R", "K322E", "-326K", "N328-", "S337L", "Q361K", "T385P", "G401E", "K414E", "N435S", "G443E", "R472K", "I480R"], "gp41": ["K106R", "N160T", "N166S", "K172R", "H212Q", "L244I", "A245V", "T268K", "V318I"], "nef": ["P14S", "K21R", "Q22R", "S46T", "C55S", "H116N", "D151K", "Q152E", "E153A", "-155E", "-156N", "-157S", "-158K", "-159E", "-160E", "M194T", "R196K"], "p17": ["R18K", "R26K", "M31L", "R91K", "N109K"], "p24": ["H12Y", "I91V", "L111P", "T148V", "K199R"], "p6": ["L5P"], "p7": ["I12T", "I50V"], "pro": ["I62V", "M89L", "I93L"], "rev": ["R14N", "R53S", "I55L", "T62N", "N86K"], "tat": ["K40T", "S61R", "S75P"], "vif": ["T74P", "P188S"], "vpr": ["S15F", "D52N", "A55T"], "vpu": ["A27G", "K31R", "A50E"]}, "labels": {"aa": "INT: A124N, D167E, D256E; RT-p51: S162N, V179I, I200T, E297K, A304E, V326I, A376V, T386A, E404D; RT-p66: S162N, V179I, E297K, A304E, V326I, A376V, T386A, E404D, H483Y; gp120: S1N, K31Q, E34K, I56M, N102T, D105K, -106A, -109M, T110I, -111N, V126A, K127D, N128D, N132S, M133T, E136D, R138T, K140M, Q142H, K143T, Y149D, K150M, V154I, P155N, I156G, E157D, N159S, S160M, S161I, -162N, Y163-, R164-, L165-, I166-, N167-, A176P, G209A, S272Y, T277K, I279V, H280R, Y302H, K304R, K322E, -326K, N328-, S337L, Q361K, T385P, G401E, K414E, N435S, G443E, R472K, I480R; gp41: K106R, N160T, N166S, K172R, H212Q, L244I, A245V, T268K, V318I; nef: P14S, K21R, Q22R, S46T, C55S, H116N, D151K, Q152E, E153A, -155E, -156N, -157S, -158K, -159E, -160E, M194T, R196K; p17: R18K, R26K, M31L, R91K, N109K; p24: H12Y, I91V, L111P, T148V, K199R; p6: L5P; p7: I12T, I50V; pro: I62V, M89L, I93L; rev: R14N, R53S, I55L, T62N, N86K; tat: K40T, S61R, S75P; vif: T74P, P188S; vpr: S15F, D52N, A55T; vpu: A27G, K31R, A50E"}}}, {"name": "MG760386", "node_attrs": {"div": 0.14706, "accession": "MG760386", "clade_membership": {"value": "CRF97_01B"}, "country": {"value": "LA"}, "date": {"value": 2012.0}, "Strain_name": {"value": "VI20F5274"}, "LANL_subtype": {"value": "CRF97_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G52A", "G156T", "A303T", "G383T", "A470T", "C482T", "A497G", "A605T", "C719A", "A725T", "T746C", "C774A", "A809G", "G818A", "C897T", "A920G", "A1025T", "A1074G", "G1112A", "A1256G", "A1319T", "T1331C", "A1418G", "A1419G", "T1421C", "C1456G", "C1490T", "T1501A", "T1511C", "T1541A", "G1553A", "A1564G", "A1601G", "G1643A", "G1690A", "G1709A", "C1826A", "A1897G", "C2063A", "C2080T", "C2083T", "C2098A", "A2113C", "A2119G", "C2149A", "C2158T", "A2164G", "G2182A", "G2198A", "T2199C", "C2211A", "A2215G", "A2293G", "G2387T", "C2420T", "A2431G", "A2437C", "C2485T", "C2488A", "T2521C", "T2527C", "G2542A", "A2557G", "A2612G", "G2656A", "A2734G", "A2881G", "G2909C", "G2951A", "G2980A", "A3001G", "A3058G", "T3139C", "A3292G", "A3637G", "C3730T", "C3734A", "C3751T", "A3866G", "A3937G", "T4009C", "T4153C", "A4245G", "A4249T", "A4259C", "A4261T", "A4287C", "A4333G", "A4382C", "A4384T", "A4387T", "A4390C", "A4399C", "A4414C", "A4420C", "A4427T", "C4471T", "A4528T", "G4673A", "A4766T", "G4779A", "A4787G", "G4861A", "G5065A", "T5252C", "A5421G", "C5448T", "A5680T", "A5711G", "A5760G", "A6030G", "A6045G", "T6046A", "G6076T", "C6141A", "T6169G", "A6170G", "T6171C", "T6174A", "T6178A", "T6180A", "C6183A", "A6191G", "A6194G", "A6197T", "-6198C", "-6202C", "-6203A", "-6204T", "-6205G", "A6206G", "-6207G", "-6208A", "A6209T", "T6210A", "-6211T", "-6216C", "-6217A", "-6220T", "A6221G", "G6227-", "A6228-", "C6252T", "T6306C", "A6336G", "-6340G", "G6392A", "A6451G", "C6499T", "G6520A", "A6568C", "G6693A", "C6707T", "G6774C", "-6835T", "A6952-", "-6963G", "-6964T", "-6968T", "-6972A", "-6973C", "-6974C", "-6975G", "-6976G", "-6980G", "-6981G", "-6982G", "-6983A", "-6984T", "-6985G", "-6994T", "-6995A", "G7088A", "A7095T", "T7102A", "A7106G", "T7108A", "G7113A", "T7159G", "A7161T", "A7203T", "A7237C", "G7408T", "G7441A", "A7734G", "C7930T", "C7932A", "C8009A", "A8023G", "A8032G", "G8330T", "C8509T", "T8552G", "A8553C", "T8636A", "C8715G", "G8717T", "-8988T", "G8996-", "G8997-", "C9018G", "G9019-", "C9028-", "T9029-", "G9030-", "G9031-", "G9032-", "T9039-", "T9040-"], "INT": ["I31V", "E157G", "L158F", "I162L", "H171P", "I203L", "L213F", "K215N", "T218S"], "RT-p51": ["E6D", "V35T", "T39K", "A98S", "K173E", "A272P", "A286T"], "RT-p66": ["E6D", "V35T", "T39K", "A98S", "K173E", "T200I", "A272P", "A286T", "Q547K"], "gp120": ["E59R", "N64R", "E74D", "P96H", "N108-", "T110-", "K127R", "L151P", "-162E", "V180I", "N204D", "P285S", "G307A", "E412K", "K414I", "S416R", "N418V", "S420N", "N435T", "T436I", "N450I"], "gp41": ["N96T", "K144R", "S210Y", "A343S"], "nef": ["I20L", "T56I", "D98E", "Q125D"], "p17": ["W16C", "Q90H", "Q130H"], "p2": ["A11G"], "p24": ["L15I", "E98D", "I115V", "I230V"], "p7": ["I12N", "K33R"], "pro": ["L10I"], "rev": ["A54E", "I59V", "T62A"], "tat": ["P74L", "S75T"], "vif": ["M29I", "V65I", "R92K", "E117D", "R160K"], "vpr": ["Y50H", "Y72F"], "vpu": ["T2S", "I25L", "K35R"]}, "labels": {"aa": "INT: I31V, E157G, L158F, I162L, H171P, I203L, L213F, K215N, T218S; RT-p51: E6D, V35T, T39K, A98S, K173E, A272P, A286T; RT-p66: E6D, V35T, T39K, A98S, K173E, T200I, A272P, A286T, Q547K; gp120: E59R, N64R, E74D, P96H, N108-, T110-, K127R, L151P, -162E, V180I, N204D, P285S, G307A, E412K, K414I, S416R, N418V, S420N, N435T, T436I, N450I; gp41: N96T, K144R, S210Y, A343S; nef: I20L, T56I, D98E, Q125D; p17: W16C, Q90H, Q130H; p2: A11G; p24: L15I, E98D, I115V, I230V; p7: I12N, K33R; pro: L10I; rev: A54E, I59V, T62A; tat: P74L, S75T; vif: M29I, V65I, R92K, E117D, R160K; vpr: Y50H, Y72F; vpu: T2S, I25L, K35R"}}}]}]}, {"name": "NODE_0000668", "node_attrs": {"div": 0.09602999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A592G", "T593G", "T596C", "T602C", "A697G", "G743A", "C747G", "T748C", "T749A", "C773T", "A791G", "A803G", "G818A", "C823G", "G829A", "A866G", "C890T", "C892T", "C893G", "C902T", "C904T", "T917C", "A920G", "A977G", "T978G", "G980A", "T983C", "G989A", "G1005C", "A1022G", "G1067A", "T1091C", "A1127G", "C1175T", "T1214C", "C1230A", "A1247C", "C1253A", "T1280C", "T1299C", "G1301A", "T1322C", "A1329T", "C1350A", "C1362T", "T1385C", "A1418G", "T1444C", "A1446C", "C1447A", "A1449C", "-1452G", "T1511C", "G1532A", "A1536C", "G1562A", "C1571T", "A1586G", "C1598T", "A1903T", "A1969G", "C1986T", "A2164G", "T2236C", "C2281T", "A2311G", "T2335C", "T2521C", "A2613T", "G3166A", "C3922T", "T4009C", "T4276G", "C6175-", "-6208A", "-7164C", "T7843C", "C8690T", "G8873A", "C8903T", "C8904G", "G8942A", "C8951T"], "INT": ["D167E"], "RT-p51": ["K173I"], "RT-p66": ["K173I"], "nef": ["I43V", "Y120F"], "p17": ["Y86W", "D121G"], "p2": ["V7A", "T8Q"], "p24": ["L6A", "A31G", "S33N", "T54M", "T58I", "L83V", "A92P", "E128D", "T200S", "P207T"], "p7": ["V13-"], "pro": ["E35D"], "vif": ["K93N"]}, "labels": {"aa": "INT: D167E; RT-p51: K173I; RT-p66: K173I; nef: I43V, Y120F; p17: Y86W, D121G; p2: V7A, T8Q; p24: L6A, A31G, S33N, T54M, T58I, L83V, A92P, E128D, T200S, P207T; p7: V13-; pro: E35D; vif: K93N"}}, "children": [{"name": "NODE_0000669", "node_attrs": {"div": 0.10044999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A159T", "C160-", "A168-", "A169-", "A170-", "A171-", "T172-", "C173-", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "T201C", "A215-", "A216-", "G458A", "A647G", "T655C", "G665A", "C668T", "A836G", "A968C", "C1211T", "A1364G", "T1451A", "-1456G", "C1610T", "A1644C", "G1685A", "A1689C", "C1714A", "A1715G", "-1730T", "-1748T", "C1751A", "C1756A", "A1771T", "-1783T", "-1784A", "-1785T", "-1786A", "T1828C", "A1840G", "A1849G", "C1853T", "G2155A", "A3937G", "A4183G", "A4865T", "A4916T", "A5155G", 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"vpr": ["Y15H", "N28T"], "vpu": ["T2S", "F30Y", "R31L", "D73N"]}, "labels": {"aa": "RT-p51: E245M, Q278E, D291E, I292V, T312E, D335G, T369A; RT-p66: E245M, Q278E, D291E, I292V, T312E, D335G, T369A; gp120: H33Y, E34D, T35E, I56V, H57V, Q77H, V80I, -107K, -109I, -111N, -122E, E125-, V126I, L137I, V180I, E265V, E309A, A318S, L388-, N437-, I468V, R472K, E479Q; gp41: I8F, F9L, S42R, M54L, K80Q, F81L, L84I, I91L, A96T, S101A, T102S, Y108L, E109D, E110D, N129K, Q130E, E133T, I134L, L135I, T136E, D143E, K147L, D148E, N166K, I187V, P209L, R218K, R221G, Q229P, A322V; nef: I10L, V16I, S46T; p17: S9T, R30K, I104M, V107A, S111G; p6: N47S; pro: N37D, L63P, K69H, M89L, I93L; rev: S30P, S31P, K39R, S67P, T68A; tat: K71E, S75P, I76T, I77T, D83N; vif: E61D, L64I, R92G, S95N, R158K; vpr: Y15H, N28T; vpu: T2S, F30Y, R31L, D73N", "clade": "CRF58_01B"}}, "children": [{"name": "CRF58_01B_NODE_0000001", "node_attrs": {"div": 0.13015999999999997, "clade_membership": {"value": "CRF58_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T531C", "C596T", "G866A", "T1853G", "G2972A", "G3538A", "A3891G", "A4696G", "A5737G", "C5974T", "A6188G", "-6198G", "T6211A", "-6226T", "-6230G", "A6303G", "T6395A", "G7004A", "A7157G", "A7632C", "A7847G", "A8222G", "A8338G", "G8350A", "A8407G"], "INT": ["N39S"], "RT-p51": ["V293I"], "RT-p66": ["V293I"], "gp120": ["K150R", "-377G", "-378N", "-379N", "-380T", "-381I", "I387-"], "gp41": ["I182V"], "nef": ["G3N", "Q22R"], "p17": ["S66P"], "pro": ["L19V"], "vpr": ["I63M"], "vpu": ["K44E"]}, "labels": {"aa": "INT: N39S; RT-p51: V293I; RT-p66: V293I; gp120: K150R, -377G, -378N, -379N, -380T, -381I, I387-; gp41: I182V; nef: G3N, Q22R; p17: S66P; pro: L19V; vpr: I63M; vpu: K44E"}}, "children": [{"name": "KC522035", "node_attrs": {"div": 0.15768999999999997, "accession": "KC522035", "clade_membership": {"value": "CRF58_01B"}, "country": {"value": "MY"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10MYKJ036"}, "LANL_subtype": {"value": "CRF58_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A209G", "A368G", "G428A", "T456C", "G495A", "A534G", "A576G", "A585G", "C586T", "G615A", "C657A", "A658G", "A715C", "A758G", "G791A", "G836A", "T851C", "T890C", "A899G", "A944T", "C1040T", "C1115A", "A1176G", "G1192A", "T1211C", "A1265T", "G1298A", "C1299T", "A1350G", "A1370G", "A1451T", "G1452A", "G1455A", "G1456C", "G1474A", "C1490A", "A1546G", "T1610C", "T1613C", "G1642A", "A1643G", "C1644A", "G1664A", "A1685G", "A1746G", "G1819A", "A1832C", "G1846A", "G1907A", "G1981A", "G2032A", "C2033A", "C2034A", "A2230G", "C2236T", "T2245C", "G2273A", "C2353T", "C2440T", "C2449T", "G2459A", "A2462G", "G2463A", "G2473A", "C2488T", "A2498G", "G2548A", "A2563C", "T2613G", "G2674A", "G2828A", "G2855A", "C2863T", "A2884G", "A2977C", "C2978T", "A3025G", "A3031C", "C3032T", "C3100A", "A3127G", "A3214G", "G3279A", "T3303C", "C3322A", "C3331T", "T3346C", "A3367G", "A3478G", "G3491A", "C3496T", "A3532G", "T3544C", "A3622G", "G3644A", "T3909A", "A3973G", "G3989A", 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"V517I"], "gp120": ["S3L", "D21N", "E59G", "-106K", "-112G", "-113N", "-114S", "-115S", "-116L", "-118N", "-119I", "-120T", "-121D", "-123V", "-124R", "I126-", "K127-", "K143R", "Y145H", "N159D", "N161S", "R291Q", "D294E", "K300R", "K322R", "-326N", "N327D", "N328T", "K329D", "T330K", "K361Q", "-367W", "-371T", "-372R", "-373N", "-374G", "-375T", "-376I", "-382G", "-383N", "-384I", "G401E", "V402A", "S412R", "N432D", "-433P", "N434G", "E436N", "-437T"], "gp41": ["D110A", "V187I", "L242F", "A268T", "R277N", "A310T", "I329L", "L340-", "E341-", "R342-", "A343-"], "nef": ["V43I", "T46S", "M48I", "V56T", "G83E", "F89Y", "D98E", "K105Q", "E108D", "I133V"], "p17": ["M31I", "A54T", "T67A", "T81A", "T84V", "V94I", "Q108R", "K127T"], "p2": ["Q9H", "-10T", "-12T"], "p24": ["E71D", "D128E", "S149G", "R154K", "T207A"], "p6": ["T23A", "S47N"], "p7": ["R3K", "N27S"], "pro": ["T12P", "D37N", "P79N"], "rev": ["I55L", "S61R", "P67S", "S86N"], "tat": ["K63Q"], "vif": ["K37R", "L59I", "K63R", "I64L", "K122R", "T154I", "K176E"], "vpr": ["Q3R", "T28A"], "vpu": ["D62E", "N73D", "L82V"]}, "labels": {"aa": "INT: L45Q, V72I, L74M, K103R, V165I, I203M, K215N; RT-p51: V60I, E122K, S123D, I135V, I173R, V254I, E312D, P313S, R395K, M403T; RT-p66: V60I, E122K, S123D, I135V, I173R, V254I, E312D, P313S, R395K, M403T, V466I, V517I; gp120: S3L, D21N, E59G, -106K, -112G, -113N, -114S, -115S, -116L, -118N, -119I, -120T, -121D, -123V, -124R, I126-, K127-, K143R, Y145H, N159D, N161S, R291Q, D294E, K300R, K322R, -326N, N327D, N328T, K329D, T330K, K361Q, -367W, -371T, -372R, -373N, -374G, -375T, -376I, -382G, -383N, -384I, G401E, V402A, S412R, N432D, -433P, N434G, E436N, -437T; gp41: D110A, V187I, L242F, A268T, R277N, A310T, I329L, L340-, E341-, R342-, A343-; nef: V43I, T46S, M48I, V56T, G83E, F89Y, D98E, K105Q, E108D, I133V; p17: M31I, A54T, T67A, T81A, T84V, V94I, Q108R, K127T; p2: Q9H, -10T, -12T; p24: E71D, D128E, S149G, R154K, T207A; p6: T23A, S47N; p7: R3K, N27S; pro: T12P, D37N, P79N; rev: I55L, S61R, P67S, S86N; tat: K63Q; vif: K37R, L59I, K63R, I64L, K122R, T154I, K176E; vpr: Q3R, T28A; vpu: D62E, N73D, L82V"}}}, {"name": "KC522032", "node_attrs": {"div": 0.15454999999999997, "accession": "KC522032", "clade_membership": {"value": "CRF58_01B"}, "country": {"value": "MY"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11MY1ZK731"}, "LANL_subtype": {"value": "CRF58_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A265G", "C284G", "A303T", "A317G", "C361G", "A374G", "A424G", "G451A", "A452C", "C535G", "C558A", "A562G", "C602T", "G650A", "G690-", "C691-", "A692-", "A714C", "T774A", "T979C", "G1090A", "G1109A", "C1115T", "C1247T", "C1280T", "C1295T", "T1329G", "A1339G", "G1364A", "A1492C", "G1493C", "C1615A", "A1661G", "T1748C", "T1752G", "A1781G", "C1787T", "T1792C", "C1798A", "A1874G", "A1894G", "G1901A", "A1932G", "C1960T", "A1984G", "G2030A", "A2122T", "A2404G", "G2566A", "C2605A", "A2617G", "A2710G", "T2770C", "T2791C", "G2869A", "G2914A", "A2925G", "A2988C", "G3016A", "G3046A", "C3055T", "A3120T", "G3211A", "C3223T", "T3319G", "G3477A", "C3542T", "A3808C", "T3904C", "C3908T", "T4039G", "G4264A", "G4361C", "A4397T", "A4407C", "A4677G", "A4695G", "T4702C", "T4769G", "G4859A", "A4900G", "T5084G", "G5131A", "G5141A", "A5142C", "A5148G", "A5159G", "G5176A", "C5214A", "G5236A", "A5246C", "A5282C", "C5306A", "G5308A", "T5356C", "A5357T", "C5432A", "T5515C", "T5568C", "A5581G", "G5587A", "C5687T", "T5708G", "G5734A", "G5739A", "G5791-", "A5792-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "G5799-", "C5801A", "A5803G", "A5805G", "C5806T", "T5808G", "-5809G", "-5810C", "-5811C", "G5864A", "C5866T", "T5887C", "T5929C", "A6065G", "A6066G", "T6072C", "C6148T", "T6151C", "A6159C", "T6160G", "-6170T", "A6174C", "G6175C", "C6178G", "C6189T", "A6194T", "G6195T", "C6196A", "C6199A", "-6201A", "C6202T", "-6204C", "A6206G", "A6212G", "T6213G", "-6216A", "-6217T", "-6218A", "-6219T", "-6220A", "-6221A", "-6222C", "-6225A", "-6229A", "T6242A", "A6281C", "T6287A", "G6323A", "A6327G", "T6328C", "A6338G", "-6340G", "A6470G", "C6477A", "G6605A", "C6607T", "C6613T", "C6632T", "T6634G", "A6639G", "A6649G", "A6689G", "C6692A", "C6721T", "G6809A", "-6833A", "-6834A", "-6835G", "T6849A", "A6913G", "G6948A", "A6992-", "-6996A", "-6999C", "A7001G", "A7002G", "C7006T", "C7008A", "T7011C", "T7078C", "G7093A", "A7094C", "G7095C", "C7096A", "T7147G", "A7151G", "A7152G", "T7153G", "T7159G", "A7163-", "C7164-", "T7165-", "G7166-", "A7167-", "G7168-", "C7170T", "A7269T", "G7307A", "T7433C", "C7463A", "G7492A", "A7527T", "T7579C", "T7609C", "G7631A", "G7640C", "A7689G", "C7701A", "A7726G", "A7729G", "C7951A", "G7977A", "G8019C", "G8030C", "A8032G", "G8036A", "C8037T", "A8076G", "C8092A", "G8130A", "C8146T", "T8164C", "T8182A", "G8239A", "T8371G", "T8374C", "C8382A", "A8397C", "G8439A", "T8505C", "G8506A", "T8507G", "A8517G", "G8518A", "C8543A", "A8584T", "G8590C", "C8640A", "A8656G", "C8669T", "T8711C", "A8717C", "G8732A", "A8746T", "T8786A", "G8807A", "C8810A", "A8873C", "A8874G", "T8887G", "A8892C", "G8904T", "T8972A", "C8979G", "T8980C", "G8982A", "C8985A", "T8986C", "-8988T", "A9101G"], "INT": ["E11D", "A196P", "I208L", "K211T"], "RT-p51": ["M245V", "K277R", "E298A", "Y342F"], "RT-p66": ["M245V", "K277R", "E298A", "Y342F", "R461K", "H483Y"], "gp120": ["D4N", "N71G", "V73A", "N102T", "D105N", "I109L", "T110R", "-112T", "-123I", "-124G", "-125N", "K127T", "S130T", "K143Q", "Y145N", "D157K", "N158G", "N160S", "N206D", "T208K", "D251N", "K262R", "I279V", "H280S", "E319K", "-326K", "N328-", "I332K", "S365N", "-375E", "-376T", "-382I", "T385-", "I386-", "S414P", "-433G", "N434T", "N435E", "E438-", "T439I", "K472M"], "gp41": ["V2I", "L54M", "Y75F", "D110T", "N113H", "K129R", "T133D", "K218R", "G225E", "S239T", "A243P", "A245I", "H258R", "F263L"], "nef": ["L10R", "V11A", "P14T", "V33I", "C55Q", "R59E", "Y81F", "G83A", "L100I", "K105R", "Q125H", "Y135F", "D156E", "E177D", "R178G", "M182R", "K184Q"], "p1": ["K4R", "I5L"], "p17": ["T9S", "K30R", "R39N", "T67S", "L75I", "K76R", "A120G", "G121-", "K127Q"], "p2": ["-11A", "-12G"], "p24": ["L15I", "V83A", "S120N", "S200A", "K203R"], "p6": ["S25A", "L38S", "S40Y"], "p7": ["Q9P", "T50N"], "pro": ["T26A", "D35N", "K45R", "I62M", "G78R"], "rev": ["I18T", "E57D", "S61T", "T62A", "C63Y", "H82N", "P100S", "S106P", "S112T"], "tat": ["T19K", "Y47H", "I69V", "E71K", "P81Q", "N83D"], "vif": ["I31V", "K37G", "F39S", "D61E", "Q105R", "G182D", "N186H", "T188A"], "vpr": ["E13T", "H15R", "T19A", "P37H", "N48H", "I60L", "L68I", "I84T"], "vpu": ["A27V", "L34R", "V43I"]}, "labels": {"aa": "INT: E11D, A196P, I208L, K211T; RT-p51: M245V, K277R, E298A, Y342F; RT-p66: M245V, K277R, E298A, Y342F, R461K, H483Y; gp120: D4N, N71G, V73A, N102T, D105N, I109L, T110R, -112T, -123I, -124G, -125N, K127T, S130T, K143Q, Y145N, D157K, N158G, N160S, N206D, T208K, D251N, K262R, I279V, H280S, E319K, -326K, N328-, I332K, S365N, -375E, -376T, -382I, T385-, I386-, S414P, -433G, N434T, N435E, E438-, T439I, K472M; gp41: V2I, L54M, Y75F, D110T, N113H, K129R, T133D, K218R, G225E, S239T, A243P, A245I, H258R, F263L; nef: L10R, V11A, P14T, V33I, C55Q, R59E, Y81F, G83A, L100I, K105R, Q125H, Y135F, D156E, E177D, R178G, M182R, K184Q; p1: K4R, I5L; p17: T9S, K30R, R39N, T67S, L75I, K76R, A120G, G121-, K127Q; p2: -11A, -12G; p24: L15I, V83A, S120N, S200A, K203R; p6: S25A, L38S, S40Y; p7: Q9P, T50N; pro: T26A, D35N, K45R, I62M, G78R; rev: I18T, E57D, S61T, T62A, C63Y, H82N, P100S, S106P, S112T; tat: T19K, Y47H, I69V, E71K, P81Q, N83D; vif: I31V, K37G, F39S, D61E, Q105R, G182D, N186H, T188A; vpr: E13T, H15R, T19A, P37H, N48H, I60L, L68I, I84T; vpu: A27V, L34R, V43I"}}}]}, {"name": "CRF58_01B_NODE_0000002", "node_attrs": {"div": 0.13268999999999997, "clade_membership": {"value": "CRF58_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G740A", "C968A", "G977A", "G998A", "C1013T", "G1022A", "T1238C", "A1442C", "C1644T", "T1653C", "T1999C", "T4126C", "G5293A", "G6172C", "G6234A", "A6734G", "T6735A", "A6736C", "G7026A", "C7084T", "A7148G", "T8182C", "G8861A", "C8934A", "T8935A", "T8939C"], "gp120": ["D157E", "N327-", "R391K"], "nef": ["M173I", "S188A", "L198K"], "p1": ["I5F", "S8P"], "p2": ["A7V"], "p24": ["D79E"], "rev": ["S112P"], "vif": ["F39V"]}, "labels": {"aa": "gp120: D157E, N327-, R391K; nef: M173I, S188A, L198K; p1: I5F, S8P; p2: A7V; p24: D79E; rev: S112P; vif: F39V"}}, "children": [{"name": "KC522033", "node_attrs": {"div": 0.15768999999999997, "accession": "KC522033", "clade_membership": {"value": "CRF58_01B"}, "country": {"value": "MY"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11MY1RJ704"}, "LANL_subtype": {"value": "CRF58_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A303T", "A412G", "T435A", "A452G", "A513T", "G579A", "A585G", "C586T", "T662G", "T774G", "T892C", "G978A", "C1280T", "G1313A", "A1350C", "C1444T", "A1461G", "G1498A", "T1571C", "T1598C", "A1614G", "C1615A", "T1616A", "G1687A", "C1767A", "C1768A", "C1782A", "T1783C", "A1804G", "C1826T", "C1828A", "C1831A", "G1901A", "A1982G", "T2104C", "G2828A", "A2884G", "G2951A", "A2985C", "A3043G", "A3120T", "C3225A", "T3240C", "G3250A", "T3262C", "T3368C", "T3449C", "G3477A", "A3521C", "T3577C", "G3647A", "C3652T", "C3712T", "G3766A", "G3772A", "G3787A", "C3799T", "T3865C", "C3892T", "G3952A", "T3962A", "A4030G", "A4051G", "C4123T", "C4162T", "T4678C", "T4701G", "G5066A", "T5081C", "A5112G", "C5215A", "T5237C", "A5246G", "C5250A", "A5305G", "A5345G", "A5421G", "A5462T", "C5478T", "G5545A", "G5561A", "A5576T", "C5612T", "G5620C", "C5651T", "C5653A", "A5689T", "C5698A", "T5699G", "G5747A", "C5756A", "A5790G", "G5791-", "A5792-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "G5799-", "C5801A", "C5802T", "A5803G", "A5805G", "C5806T", "T5808G", "-5809G", "-5810C", "-5811C", "C5862T", "G5915A", "C5924T", "T5956G", "G6020A", "G6023C", "T6024A", "A6025C", "T6026C", "C6046T", "A6076G", "A6088G", "-6170G", "T6171C", "C6172T", "C6178T", "C6184T", "T6187C", "C6189T", "C6190A", "A6194G", "G6195A", "C6196T", 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"C8009A", "G8019A", "C8103T", "A8184G", "G8231A", "T8265C", "A8458G", "C8460T", "T8483C", "G8486A", "C8500A", "G8506A", "G8508A", "T8509G", "A8519C", "G8555A", "G8558A", "C8568T", "C8669T", "C8675T", "A8688C", "T8701A", "T8711C", "A8726G", "A8746T", "A8819G", "C8825T", "C8828T", "G8834A", "A8922G", "A8947T", "T9074C", "G9135A"], "RT-p51": ["A286T", "E297A", "Y342F", "T377K", "I382T"], "RT-p66": ["A286T", "E297A", "Y342F", "T377K", "I382T", "R461K", "K476Q", "V518I"], "gp120": ["S3L", "D21N", "D34E", "V56I", "V57H", "D105N", "-106A", "I109V", "-112I", "-113N", "-114D", "-115S", "-116L", "-117G", "-118N", "-119F", "-120T", "-121D", "-123V", "I126-", "M133I", "I137L", "I156M", "N158E", "N160S", "N161E", "S162-", "T181S", "D202E", "N206T", "E239K", "T250S", "N252S", "A253D", "T255N", "N267S", "T275I", "H280R", "D297N", "T308K", "K315Q", "P336S", "I343V", "R351K", "N358D", "T366-", "-383S", "-384D", "T385N", "I387T", "-388I", "N420S", "N434-", "N435-", "E436-", "I447M"], "gp41": ["A14T", "K77R", "I84L", "A101T", "L108H", "N113D", "K129E", "T133A", "E137K", "L147Q", "V235I", "S239N", "A267V", "Q294R", "A307T", "A310T", "V321A"], "nef": ["G3S", "K39R", "H40Y", "M48I", "A53D", "C55Y", "V56S", "R59S", "N116H", "F120Y", "Y135F", "I194V", "Y202F"], "p1": ["K4R"], "p17": ["K26R", "L34I", "I60L", "T84V", "N109K"], "p2": ["Q6H", "-11G", "-12V", "I13-"], "p24": ["L15V", "M54T", "T207P"], "p6": ["S3N", "P30K", "L35T", "K42R", "S50*", "S51*"], "p7": ["R11K", "T50E"], "pro": ["D35N", "I62V"], "rev": ["V16I", "I21F", "R53H"], "tat": ["K29I", "G57R", "S62N", "N67I"], "vif": ["K176E"], "vpr": ["Q3R", "Y45H", "N48D", "T49N"], "vpu": ["S2L", "E5Q", "A15V", "L16I", "I28L", "L31R", "R47K", "A50E"]}, "labels": {"aa": "RT-p51: A286T, E297A, Y342F, T377K, I382T; RT-p66: A286T, E297A, Y342F, T377K, I382T, R461K, K476Q, V518I; gp120: S3L, D21N, D34E, V56I, V57H, D105N, -106A, I109V, -112I, -113N, -114D, -115S, -116L, -117G, -118N, -119F, -120T, -121D, -123V, I126-, M133I, I137L, I156M, N158E, N160S, N161E, S162-, T181S, D202E, N206T, E239K, T250S, N252S, A253D, T255N, N267S, T275I, H280R, D297N, T308K, K315Q, P336S, I343V, R351K, N358D, T366-, -383S, -384D, T385N, I387T, -388I, N420S, N434-, N435-, E436-, I447M; gp41: A14T, K77R, I84L, A101T, L108H, N113D, K129E, T133A, E137K, L147Q, V235I, S239N, A267V, Q294R, A307T, A310T, V321A; nef: G3S, K39R, H40Y, M48I, A53D, C55Y, V56S, R59S, N116H, F120Y, Y135F, I194V, Y202F; p1: K4R; p17: K26R, L34I, I60L, T84V, N109K; p2: Q6H, -11G, -12V, I13-; p24: L15V, M54T, T207P; p6: S3N, P30K, L35T, K42R, S50*, S51*; p7: R11K, T50E; pro: D35N, I62V; rev: V16I, I21F, R53H; tat: K29I, G57R, S62N, N67I; vif: K176E; vpr: Q3R, Y45H, N48D, T49N; vpu: S2L, E5Q, A15V, L16I, I28L, L31R, R47K, A50E"}}}, {"name": "CRF58_01B_NODE_0000003", "node_attrs": {"div": 0.13548999999999997, "clade_membership": {"value": "CRF58_01B"}}, "branch_attrs": {"mutations": {"nuc": ["-304A", "C467T", "A645C", "C830T", "A1253G", "G1493C", "A2380G", "G2869A", "A2925G", 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"Strain_name": {"value": "09MYPR37"}, "LANL_subtype": {"value": "CRF58_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T435A", "A605G", "A643G", "C669-", "A670-", "G671-", "G683A", "G686A", "A699G", "G706A", "C771T", "T794C", "A873G", "G978A", "A1350G", "A1370G", "G1452A", "C1491A", "A1532G", "C1536T", "G1543A", "G1642A", "C1656A", "A1765G", "A1793G", "G2198A", "A2498G", "G2629A", "T2672C", "A2699G", "A2743G", "G2828A", "G2847A", "G2984A", "A2985G", "C2996T", "C3331T", "G3438A", "A3808C", "G3859A", "G3997A", "A4030G", "G4063T", "A4096G", "T4153C", "A4498G", "A4549G", "A4558T", "A4650C", "T4655C", "T4674C", "T4702C", "A5069T", "T5281G", "T5356C", "C5438A", "A5462T", "A5581G", "C5707A", "T5708G", "G5729A", "A5737G", "A5751G", "A5846G", "T5847C", "C5862T", "A6009G", "A6015G", "T6026A", "C6110G", "-6170G", "A6176G", "T6180A", "C6181T", "A6197C", "-6198C", "C6199T", "-6201A", "-6204A", "A6205T", "-6221G", "-6222A", "G6227-", "A6228-", "G6253A", "A6303G", "C6305G", "G6314A", "T6325A", 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"vif": ["H48N"], "vpu": ["K44N"]}, "labels": {"aa": "gp120: N71K, I332S; gp41: A322V; p17: S9T, S66P; rev: H82N; vif: H48N; vpu: K44N"}}, "children": [{"name": "JX390610", "node_attrs": {"div": 0.14970999999999998, "accession": "JX390610", "clade_membership": {"value": "CRF53_01B"}, "country": {"value": "MY"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11FIR164"}, "LANL_subtype": {"value": "CRF53_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A224G", "A388G", "T396C", "T435A", "A458G", "T525A", "C539T", "T570C", "T571A", "A576C", "C577T", "A579G", "A585G", "C586T", "C596T", "C623T", "A666G", "G697A", "G738A", "G791A", "G803A", "T824G", "G836A", "A938G", "G977A", "G978A", "C983T", "T1055C", "A1070G", "T1211C", "C1238T", "C1295A", "T1334C", "A1412G", "T1422C", "C1440A", "C1442T", "A1451T", "A1452G", "G1455A", "G1456C", "A1495G", "G1687A", "A1725C", "A1738G", "A1781G", "G1794A", "G1840A", "A1841G", "G1845C", "T1903G", "A1906G", "T1978G", "A1988C", "A2026G", "A2075C", "T2095C", 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"G5236A", "G5276C", "T5313C", "G5385A", "A5396G", "G5448A", "A5499G", "A5534G", "G5535A", "G5599C", "T5602A", "G5620C", "A5634T", "A5644G", "C5687T", "A5689T", "T5696A", "A5733G", "G5747T", "G5824A", "C5869A", "T5899G", "G5965A", "G5972A", "C6052T", "G6079A", "G6085A", "A6098G", "G6099A", "A6118T", "T6139C", "A6159C", "-6170G", "-6171C", "-6172G", "-6174A", "-6175T", "A6176C", "A6177T", "T6178A", "T6180C", "C6183A", "C6189A", "A6192C", "T6193A", "G6195C", "C6196T", "A6197G", "-6203A", "-6204T", "-6205A", "A6206G", "-6217A", "G6227-", "A6228-", "G6234A", "T6242A", "A6261C", "C6263T", "G6267A", "T6285C", "C6317G", "C6318A", "G6323A", "T6328G", "A6333G", "A6339G", "T6343C", "G6345T", "A6395T", "A6425G", "G6475A", "G6481A", "C6483T", "A6489G", "A6535G", "C6631A", "T6655C", "C6667A", "T6668G", "C6669G", "A6689T", "A6753G", "T6769G", "T6785A", "T6787G", "A6791G", "C6792T", "A6797G", "A6811C", "-6833A", "-6834A", "-6835T", "A6839C", "G6841C", "A6848T", "T6849C", "A6871G", "A6937G", "C6938T", "T6946G", "A6948C", "T6949-", "A6950-", "C6951-", "T6952-", "T6953-", "G6954-", "A6992-", "G6997A", "-6998G", "G6999A", "-7000A", "-7001A", "-7002A", "C7006A", "T7009C", "T7018A", "A7065G", "C7084T", "A7093C", "A7095G", "A7149G", "T7150G", "A7161G", "T7162G", "C7170T", "G7182A", "G7198A", "T7204C", "G7276A", "A7279G", "G7295A", "A7297C", "G7390A", "C7429T", "G7456A", "C7463A", "A7477G", "G7550A", "A7552C", "A7570G", "A7640G", "A7641G", "C7642G", "A7693C", "T7747G", "G7769A", "G7773A", "G7777A", "A7796T", "A7818G", "T7844C", "T7894C", "C7929T", "T7932C", "C7950T", "C8038G", "C8080A", "A8111G", "T8164C", "G8239A", "C8311T", "C8320T", "A8338G", "T8414C", "A8475G", "G8476T", "T8477G", "G8479C", "T8495C", "T8505A", "G8508A", "G8558A", "A8591T", "G8603A", "C8640T", "A8653G", "T8675C", "C8684T", "C8699A", "C8715A", "A8716G", "T8740C", "C8741T", "A8793G", "A8794C", "A8809C", "G8818A", "C8831T", "G8852A", "A8870C", "G8888A", "G8904T", "T8939C", "C8979A", "G8982A", "T9097G"], "INT": ["I203M"], "RT-p51": ["E6N", "V60I", "S68G", "K249R", "P294Q", "R395K", "M403T"], "RT-p66": ["E6N", "V60I", "S68G", "K249R", "P294Q", "R395K", "M403T", "S447N", "V458I", "R512K", "S554K"], "gp120": ["N5K", "V40I", "S82D", "N102T", "S130T", "E136A", "R138K", "V144A", "P155E", "D157N", "N158K", "N160S", "R164M", "T181S", "T191A", "P210L", "K212R", "H259Q", "S272G", "I279L", "K300R", "I305M", "Y311K", "T313V", "K315E", "E319N", "-327N", "K329H", "N364K", "S365-", "T366-", "C367-", "-382N", "-383E", "D384T", "T385R", "Q404R", "N432R", "E436G", "N437T", "T439I", "G443E", "E481N"], "gp41": ["G83S", "N113G", "Q130H", "D148E", "A156T", "S157N", "T165S", "K172R", "P209L", "I210T", "P216Q", "T270A"], "nef": ["S45V", "S46T", "E65D", "E83D", "K104R", "Q125S", "I133T", "K151A", "D156A", "G159E", "E176D", "M182I"], "p17": ["K18R", "M31I", "L34I", "L64I", "F79H", "T81L", "I82V", "T84V", "S111G", "G121D"], "p2": ["Q6N", "Q9H", "-12T"], "p24": ["V3M", "E71D"], "p6": ["S3N", "E20G", "A39T"], "p7": ["K10R"], "pro": ["I15V", "G16A", "D35E", "I36M", "D60E", "I64L", "I93L"], "rev": ["S7D", "L64V", "L78I", "D88G", "S106P"], "tat": ["N7S", "K53R", "S75P", "P81N"], "vif": ["R4K", "M29I", "I31V", "K37-", "F39V", "E61D", "L64I", "K77Q", "N110H", "Y111H", "K122N", "A123T", "V128R", "V129I", "R131S", "K141R", "K151T", "R181K", "H183R", "T188I", "S190N"], "vpr": ["Y15N", "N28H", "P37Q", "E58Q", "G94S"], "vpu": ["E5Q", "I13V", "A27V", "I28L", "F30Y", "K35R", "R47I", "D73N"]}, "labels": {"aa": "INT: I203M; RT-p51: E6N, V60I, S68G, K249R, P294Q, R395K, M403T; RT-p66: E6N, V60I, S68G, K249R, P294Q, R395K, M403T, S447N, V458I, R512K, S554K; gp120: N5K, V40I, S82D, N102T, S130T, E136A, R138K, V144A, P155E, D157N, N158K, N160S, R164M, T181S, T191A, P210L, K212R, H259Q, S272G, I279L, K300R, I305M, Y311K, T313V, K315E, E319N, -327N, K329H, N364K, S365-, T366-, C367-, -382N, -383E, D384T, T385R, Q404R, N432R, E436G, N437T, T439I, G443E, E481N; gp41: G83S, N113G, Q130H, D148E, A156T, S157N, T165S, K172R, P209L, I210T, P216Q, T270A; nef: S45V, S46T, E65D, E83D, K104R, Q125S, I133T, K151A, D156A, G159E, E176D, M182I; p17: K18R, M31I, L34I, L64I, F79H, T81L, I82V, T84V, S111G, G121D; p2: Q6N, Q9H, -12T; p24: V3M, E71D; p6: S3N, E20G, A39T; p7: K10R; pro: I15V, G16A, D35E, I36M, D60E, I64L, I93L; rev: S7D, L64V, L78I, D88G, S106P; tat: N7S, K53R, S75P, P81N; vif: R4K, M29I, I31V, K37-, F39V, E61D, L64I, K77Q, N110H, Y111H, K122N, A123T, V128R, V129I, R131S, K141R, K151T, R181K, H183R, T188I, S190N; vpr: Y15N, N28H, P37Q, E58Q, G94S; vpu: E5Q, I13V, A27V, I28L, F30Y, K35R, R47I, D73N"}}}, {"name": "DQ366663", "node_attrs": {"div": 0.12834999999999996, "accession": "DQ366663", "clade_membership": {"value": "CRF53_01B"}, "country": {"value": "MY"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04MYKL016_1"}, "LANL_subtype": {"value": "CRF53_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A426C", "A464G", "C471G", "C583T", "C587T", "T635A", "T636C", "C655T", "A664G", "G667A", "A678C", "G709A", "C710T", "A725G", "C731T", "T858C", "C979T", "T1052C", "C1137T", "T1335C", "T1362C", "C1444T", "G1586A", "G1621A", "C1627T", "C1689A", "A1691G", "T1791G", "G1845A", "A2002G", "A2007G", "T2245A", "C2356T", "C2386A", "C2575T", "G2707A", "G2909C", "A2918C", "A2925G", "C2978T", "A2985G", "C3129A", "C3178T", "T3181C", "A3200G", "A3241C", "G3307A", "G3431T", "T3668C", "A3866G", "A3955G", "A4083G", "A4182G", "A4228G", "A4695C", "C4761A", "G4769A", "T4772A", "C4826A", "T4865A", "A5112G", "A5246C", "T5294C", "C5384T", "T5412G", "C5438A", "A5626T", "T5628G", "T5695G", "T5696C", "G5734A", "C5801G", "G5812C", "T5884G", "T5917G", "A6024C", "C6166T", "A6167G", "A6168T", "T6169G", "-6170A", "-6171C", "-6172C", "-6174A", "-6175A", "T6178C", "T6180A", "C6181T", "C6183G", "T6184C", "A6186C", "T6187A", "A6194G", "A6197T", "G6201A", "-6203A", "-6204G", "-6205A", "-6217A", "G6224A", "-6225T", "-6226A", "-6229A", "-6230A", "T6241C", "A6251G", "G6253A", "A6276C", "T6287A", "A6303G", "T6328C", "A6330G", "T6337C", "T6427G", "T6446C", "G6463A", "T6466G", "G6577A", "G6605A", "G6647A", "A6659T", "C6660T", "A6692T", "A6734G", "T6735A", "G6764C", "G6788A", "A6818G", "C6824A", "A6840G", "T6849G", "T6888C", "G6889A", "A6937C", "-6955C", "-6956A", "-6957T", "-6958A", "-6959A", "-6960A", "-6985A", "-6986A", "-6987A", "-6988T", "-6989A", "-6990A", "-6991C", "-6993C", "-6994G", "-6995G", "-6996G", "-6998G", "-7000G", "-7001T", "-7002G", "T7039C", "T7059C", "T7090G", "A7101C", "A7152T", "A7155G", "A7158G", "A7161C", "C7164A", "A7175C", "A7190G", "A7195G", "A7197G", "A7540G", "A7542C", "A7626T", "G7734A", "T7801A", "A7935T", "G7977A", "G8019C", "G8055A", "T8097C", "G8145T", "C8223T", "G8330T", "T8366C", "G8421A", "G8469A", "G8534T", "C8568T", "G8588A", "A8647G", "C8648G", "T8700C", "T8708C", "A8827G", "G8871C", "A8873C", "G8875A", "T8935G", "G8936T", "A8947T", "G8983A"], "INT": ["I31V", "I60M", "K103R", "Q136R"], "RT-p51": ["A272P", "K275Q", "K277R", "E297G", "P345Q", "T369A"], "RT-p66": ["A272P", "K275Q", "K277R", "E297G", "P345Q", "T369A", "A446S"], "gp120": ["D21E", "H57P", "V126I", "K127R", "M133V", "K141T", "Y145N", "K150R", "N159S", "S162N", "N204K", "D251N", "T269F", "T280S", "E304Q", "E312K", "E319K", "K322E", "H324N", "K329R", "M345T", "K361N", "S365N", "-368I", "-369K", "-378N", "-379N", "E381G", "-382G", "-383C", "V402A", "S412R", "S414N", "N416T", "N433I", "N434S", "N435S", "E436A", "N446D", "I447M", "K448R"], "gp41": ["M54L", "K80T", "Y108F", "R144K", "N166K", "H211L", "G225E", "S239T", "S251N", "L265S", "G281V", "A307V", "A343S"], "nef": ["A27T", "V43I", "S55C", "T56A", "Y102W", "F120L", "Q125H", "N162S", "E177H", "R178K", "S188A", "L198R", "Y202F"], "p17": ["M31L", "L46V", "A83V", "K110R", "S111N", "T115P", "S125N"], "p2": ["Q6H", "A7V", "-10T", "A11G"], "p24": ["E71D", "T83V"], "p6": ["L38V"], "p7": ["R52K", "A54V"], "pro": ["G16E", "K70R"], "rev": ["E57D", "R99S"], "tat": ["P3L", "N12K", "A21D", "I76F"], "vif": ["K37Q", "L59I", "H80Q", "N93K", "K176E"], "vpr": ["Q3R", "N48H"], "vpu": ["S7W", "F30A", "K35R", "V43I", "A65G", "-68L", "V69-"]}, "labels": {"aa": "INT: I31V, I60M, K103R, Q136R; RT-p51: A272P, K275Q, K277R, E297G, P345Q, T369A; RT-p66: A272P, K275Q, K277R, E297G, P345Q, T369A, A446S; gp120: D21E, H57P, V126I, K127R, M133V, K141T, Y145N, K150R, N159S, S162N, N204K, D251N, T269F, T280S, E304Q, E312K, E319K, K322E, H324N, K329R, M345T, K361N, S365N, -368I, -369K, -378N, -379N, E381G, -382G, -383C, V402A, S412R, S414N, N416T, N433I, N434S, N435S, E436A, N446D, I447M, K448R; gp41: M54L, K80T, Y108F, R144K, N166K, H211L, G225E, S239T, S251N, L265S, G281V, A307V, A343S; nef: A27T, V43I, S55C, T56A, Y102W, F120L, Q125H, N162S, E177H, R178K, S188A, L198R, Y202F; p17: M31L, L46V, A83V, K110R, S111N, T115P, S125N; p2: Q6H, A7V, -10T, A11G; p24: E71D, T83V; p6: L38V; p7: R52K, A54V; pro: G16E, K70R; rev: E57D, R99S; tat: P3L, N12K, A21D, I76F; vif: K37Q, L59I, H80Q, N93K, K176E; vpr: Q3R, N48H; vpu: S7W, F30A, K35R, V43I, A65G, -68L, V69-"}}}]}, {"name": "CRF53_01B_NODE_0000002", "node_attrs": {"div": 0.11541999999999998, "clade_membership": {"value": "CRF53_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A665G", "T668C", "G697A", "G1078C", "C1247T", "G1418A", "T1752C", "A2230G", "C2236T", "G2350A", "T2392G", "G2727A", "T2873C", "G4243A", "C4679A", "T4701G", "A4774G", "T5237C", "C5651T", "T5695A", "A6185G", "G6195A", "A6212G", "T6242A", "T6634C", "G6716A", "-6955C", "-6959A", "-6961A", "-6986A", "-6987A", "-6988T", "-6989A", "-6990C", "-6993C", "-6995G", "-6998T", "-7000T", "-7002C", "C7008A", "T7014C", "G7106A", "T7162G", "G7456A", "G7534A", "A7957G", "A8130G"], "RT-p51": ["S211N"], "RT-p66": ["S211N"], "gp120": ["S130T", "-378N", "-379T", "-382C", "T385N", "I387T"], "gp41": ["L263F"], "p17": ["G121D"], "p2": ["-10T"], "p24": ["G116A"], "p6": ["S25P"], "rev": ["T37A"], "tat": ["D83G"], "vif": ["F39V", "K63R"], "vpr": ["Y45H"], "vpu": ["A15V", "F30I"]}, "labels": {"aa": "RT-p51: S211N; RT-p66: S211N; gp120: S130T, -378N, -379T, -382C, T385N, I387T; gp41: L263F; p17: G121D; p2: -10T; p24: G116A; p6: S25P; rev: T37A; tat: D83G; vif: F39V, K63R; vpr: Y45H; vpu: A15V, F30I"}}, "children": [{"name": "JX390612", "node_attrs": {"div": 0.14971999999999996, "accession": "JX390612", "clade_membership": {"value": "CRF53_01B"}, "country": {"value": "MY"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10MYKJ067"}, "LANL_subtype": {"value": "CRF53_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G256-", "A278G", "G279A", "-280G", "T307C", "T434C", "G530A", "T572C", "A579G", "A605G", "G614T", "A644G", "G654A", "C655T", "G667A", "G740A", "A806G", "C830T", "A833T", "C917T", "C968T", "G978A", "G1019A", "A1079G", "C1118T", "C1136A", "C1178T", "G1232A", "A1337G", "C1442A", "G1455A", "G1472A", "A1475G", "G1508A", "C1541T", "A1642G", "G1643A", "C1676T", "C1679T", "C1680A", "A1685G", "G1687A", "C1689A", "A1691G", "G1715A", "T1728C", "A1736G", "G1778A", "A1780G", "T1792C", "C1795T", "A1838G", "G1840A", "G1845A", "A1897G", "A1907G", "A1982G", "G1991A", "T2104C", "A2113T", "C2120T", "T2209C", "A2211C", "G2222A", "T2269C", "G2332A", "C2353T", "C2356T", "T2440C", "A2524G", "A2560G", "A2579T", "T2613G", "G2656A", "A2665G", "A2710G", "T2723A", "C2776T", "G2808A", "C2831T", "A2902G", "C2944T", "G2980A", "G3001A", "A3070G", "G3071A", "A3103G", "A3124G", "C3266T", "G3279A", "G3316A", "G3438A", "G3490A", "A3583G", "A3682C", "T3755G", "A3761G", "C3843T", "A3866G", "C3892T", "G3952A", "T3962G", "C3995A", "G3997A", "C4042T", "G4063T", "C4126T", "C4162A", "G4178A", "T4216C", "A4270G", "C4318T", "C4357T", "A4391T", "G4623A", "G4642A", "A4735G", "T4742C", "T4754G", "C4820A", "G4978A", "G5065A", "A5086G", "G5128A", "A5142T", "G5155A", "A5269G", "T5292C", "A5462T", "G5599-", "T5600-", "A5601-", "T5602C", "T5606A", "T5617C", "G5652A", "T5659A", "C5687G", "G5699A", "G5734A", "G5739A", "C5802T", "C5866T", "T5878C", "G5915C", "T5917A", "T5992C", "A6008G", "C6023T", "A6030G", "G6085T", "T6115C", "G6133A", "T6148C", "A6159T", "A6167C", "A6168C", "T6169C", "-6170A", "-6171A", "-6172T", "A6173G", "-6174T", "-6175T", "A6177C", "A6182T", "A6188C", "C6189T", "C6196G", "T6199A", "G6201A", "C6202A", "-6203G", "-6204G", "-6205C", "A6206G", "-6217G", "G6227-", "A6228-", "T6252C", "G6253A", "C6263A", "A6275G", "A6281C", "T6285C", "T6331C", "A6336G", "T6340G", "T6343C", "T6364C", "T6382G", "A6388G", "G6547A", "G6572A", "G6577T", "G6588A", "G6605A", "A6609G", "C6618A", "T6637C", "A6639G", "T6655G", "C6660T", "C6673T", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "A6692G", "C6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6718G", "A6734G", "T6735A", "G6743A", "A6752C", "G6764A", "A6765C", "A6767G", "G6773A", "A6791G", "C6792T", "A6797G", "A6798G", "A6799G", "A6809G", "A6812G", "G6821A", "C6843G", "A6844C", "T6849C", "C6854A", "C6885T", "A6886G", "T6888C", "A6935G", "A6948G", "C6951A", "-6956A", "-6957C", "-6958A", "-6960T", "-6962A", "-6963A", "-6964G", "-6991C", "-6994G", "-6996G", "-7001G", "T7003G", "C7012T", "A7027G", "G7055A", "T7059C", "A7060G", "A7095T", "T7107A", "A7111G", "A7112G", "A7152T", "A7154G", "A7155G", "G7160C", "A7163C", "G7168A", "A7190G", "G7212A", "T7217C", "C7238G", "G7269A", "G7390A", "A7396G", "G7441A", "T7444C", "T7489C", "A7570G", "C7597T", "A7721G", "C7732A", "A7735G", "T7748C", "A7755C", "G7807A", "A7818G", "A7820T", "A7862G", "G7885A", "T7913G", "T7930G", "T7932A", "G7939T", "G7992A", "G8002A", "C8033A", "C8037T", "C8038G", "C8077T", "A8092T", "A8093G", "C8103T", "T8164C", "A8188G", "C8196T", "G8219A", "G8255A", "A8273G", "G8274C", "C8277T", "A8337T", "G8354A", "T8366C"], "INT": ["A23V", "I31V", "L63V", "L74I", "E96D", "V135I", "T206S", "G283D"], "RT-p51": ["E6D", "P9S", "K39T", "E43K", "S162C", "I173R", "L210M", "R238K", "V326I", "R395K"], "RT-p66": ["E6D", "P9S", "K39T", "E43K", "S162C", "I173R", "L210M", "R238K", "V326I", "R395K", "R448K", "E529D", "S554A", "I556V"], "gp120": ["D21Q", "N52D", "H57Y", "E59G", "Q77H", "N102I", "K127R", "M133T", "L137I", "K141E", "K143Q", "V144A", "N161S", "S162K", "E240K", "E241D", "R245K", "D251N", "N252S", "T255N", "K262R", "N267K", "T269I", "S278G", "T280H", "V288M", "D294E", "D297N", "K300Q", "E304T", "I305V", "G307R", "T313V", "K315G", "K320E", "E323K", "T330S", "I332T", "Q334K", "T344M", "M345T", "K361E", "T366N", "-368T", "-369I", "-370K", "E381G", "-383A", "G401R", "V402A", "S414I", "V418K", "N420D", "N433I", "N434G", "E436N", "N437Q", "N446D", "S453N", "Q462E", "R472K"], "gp41": ["M54L", "N140D", "D143E", "E151A", "K172R", "I173L", "I187V", "L204V", "I210N", "Q212H", "G230D", "L244I", "A245V", "I264V", "A267V", "R277S", "T298I", "A306T", "V318I", "R324A", "A325V", "Q345L"], "p1": ["K4R"], "p17": ["I82V", "E93D", "V107I", "S111N"], "p2": ["A11S"], "p24": ["M96I"], "p6": ["L1I", "S3N", "F17L", "E34G", "L38S", "A39V"], "pro": ["K14E", "G16E", "N37D", "I62V", "E65K"], "rev": ["Y28E", "A31S", "V52I", "L64V", "P77S", "H82C", "S106P", "T114A"], "tat": ["K29I", "L74R", "S75T", "S77I"], "vif": ["V13I", "R19K", "K50R", "H56Q", "D78E", "R131H", "R160K", "K167R", "R181K", "N186Y", "S190N"], "vpr": ["E13V", "I63T"], "vpu": ["L18I", "A27G", "R31K", "V43I"]}, "labels": {"aa": "INT: A23V, I31V, L63V, L74I, E96D, V135I, T206S, G283D; RT-p51: E6D, P9S, K39T, E43K, S162C, I173R, L210M, R238K, V326I, R395K; RT-p66: E6D, P9S, K39T, E43K, S162C, I173R, L210M, R238K, V326I, R395K, R448K, E529D, S554A, I556V; gp120: D21Q, N52D, H57Y, E59G, Q77H, N102I, K127R, M133T, L137I, K141E, K143Q, V144A, N161S, S162K, E240K, E241D, R245K, D251N, N252S, T255N, K262R, N267K, T269I, S278G, T280H, V288M, D294E, D297N, K300Q, E304T, I305V, G307R, T313V, K315G, K320E, E323K, T330S, I332T, Q334K, T344M, M345T, K361E, T366N, -368T, -369I, -370K, E381G, -383A, G401R, V402A, S414I, V418K, N420D, N433I, N434G, E436N, N437Q, N446D, S453N, Q462E, R472K; gp41: M54L, N140D, D143E, E151A, K172R, I173L, I187V, L204V, I210N, Q212H, G230D, L244I, A245V, I264V, A267V, R277S, T298I, A306T, V318I, R324A, A325V, Q345L; p1: K4R; p17: I82V, E93D, V107I, S111N; p2: A11S; p24: M96I; p6: L1I, S3N, F17L, E34G, L38S, A39V; pro: K14E, G16E, N37D, I62V, E65K; rev: Y28E, A31S, V52I, L64V, P77S, H82C, S106P, T114A; tat: K29I, L74R, S75T, S77I; vif: V13I, R19K, K50R, H56Q, D78E, R131H, R160K, K167R, R181K, N186Y, S190N; vpr: E13V, I63T; vpu: L18I, A27G, R31K, V43I"}}}, {"name": "JX390611", "node_attrs": {"div": 0.14059999999999997, "accession": "JX390611", "clade_membership": {"value": "CRF53_01B"}, "country": {"value": "MY"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10MYKJ079"}, "LANL_subtype": {"value": "CRF53_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A263G", "G317A", "G424A", "A440G", "A562G", "T571A", "C583T", "C596T", "G607A", "A620G", "G647A", "G662T", "G762A", "T763C", "T788C", "G810A", "G866A", "A926T", "T988C", "T992A", "C994T", "A1002T", "T1052C", "C1065G", "A1066C", "A1074G", "A1167T", "A1176G", "T1182C", "A1253G", "A1263T", "G1328A", "T1329A", "T1334C", "C1342G", "C1378T", "C1444T", "C1511T", "C1514T", "G1586A", "A1587C", "C1644T", "T1653C", "C1656A", "G1661A", "A1686G", "G1727C", "G1737A", "C1782G", "A1784G", "A1835G", "G1920A", "A2050C", "T2116A", "G2224T", "T2245C", "A2286G", "C2302T", "T2449G", "C2464T", "G2542A", "T2631C", "G2704A", "C2978T", "G3019A", "C3023A", "A3238G", "G3264A", "G3538T", "T3544C", "A3655G", "T3850A", "T3857C", "C3889T", "T3962C", "T3976C", "C4076G", "A4246G", "G4268A", "T4282A", "T4670C", "G4723A", "A4739G", "C4800T", "T4991C", "C5006T", "T5028C", "G5059A", "T5062C", "A5112G", "A5140G", "T5171C", "T5182C", "T5228C", "A5302G", "A5355C", "A5376C", "G5385A", "A5447G", "A5563G", "A5564C", "A5587G", "T5602A", "G5620C", "A5634T", "T5636C", "A5640G", "C5687T", "A5710C", "A5781C", "A5784G", "A5790G", "T5793G", "G5907A", "C5923T", "A5947G", "C5951A", "A5952C", "C5968T", "A6043G", "C6072T", "T6142C", "T6151C", "T6154C", "A6167-", "A6168-", "T6169-", "A6173-", "T6180C", "C6181G", "A6186T", "T6187C", "T6193C", "C6196T", "C6198A", "A6200G", "G6207C", "A6210C", "T6211A", "C6216A", "-6217T", "G6218A", "A6219C", "T6220A", "G6221A", "A6222C", "-6225A", "-6226T", "-6229A", "-6230G", "G6234A", "A6275C", "G6284A", "T6285G", "A6303G", "G6323A", "T6328C", "A6339C", "A6596G", "T6598G", "C6599A", "A6638G", "T6643C", "T6668A", "A6689T", "T6717C", "A6751G", "T6758C", "G6779A", "G6788A", "A6806G", "A6818G", "A6822G", "C6824T", "T6827G", "C6860T", "T6925C", "T6949A", "-6960C", "-6962G", "-6963G", "-6964A", "-6965A", "-6966A", "-6967T", "-6968G", "-6969A", "-6970A", "-6971A", "-6972C", "-6973C", "-6974A", "-6975C", "-6976A", "-6977G", "-6978G", "-6979A", "-6991A", "-6994C", "-6996A", "-7001A", "A7005G", "T7018C", "G7026A", "A7044G", "C7045A", "G7058A", "A7069C", "T7090G", "A7095G", "A7096C", "A7148C", "A7149G", "T7165G", "G7182C", "T7321G", "C7429T", "C7463A", "A7504G", "A7542C", "C7561A", "A7574G", "T7604C", "C7605T", "A7607T", "A7620G", "C7645T", "A7689G", "G7700A", "A7701G", "A7714T", "T7715G", "T7774C", "A7791G", "A7799C", "T7801A", "A7935T", "A7938C", "A7964G", "A8011C", "A8092C", "G8145C", "C8172T", "C8223T", "A8327G", "G8388A", "G8398A", "C8419T", "A8420G", "G8421A", "A8441G", "A8455C", "G8486A", "T8501A", "T8505A", "G8508A", "A8517C", "G8518A", "G8528A", "G8558C", "G8588A", "A8591G", "C8601T", "T8636A", "A8647G", "C8648G", "T8687C", "C8717A", "C8747T"], "INT": ["D25E", "L101V", "V165I"], "RT-p51": ["E43D", "K64R", "V179A", "L310I", "R390K"], "RT-p66": ["E43D", "K64R", "V179A", "L310I", "R390K"], "gp120": ["R18K", "A73V", "D105N", "-106A", "-107T", "-108N", "-110T", "-111T", "-113N", "-114T", "-115T", "-116D", "K141Q", "V144S", "K150R", "D157N", "N160T", "N161D", "S162E", "N248E", "L249I", "K262E", "S272T", "I279L", "V288T", "Y302H", "E309K", "E312K", "T318A", "E319K", "K322E", "E323G", "H324Y", "F325V", "P336S", "S365K", "-371T", "-372G", "-373N", "-374E", "-375T", "-376T", "-377G", "-383T", "D384G", "R391K", "N397R", "V402I", "S412R", "V418I", "N432R", "N437T"], "gp41": ["K80T", "I91V", "S101L", "T102S", "K106R", "N129S", "E137D", "S138A", "D163G", "N166Q", "H211L", "Q212P", "R221G", "G281A", "S290L", "A307I", "R342G"], "nef": ["V16I", "R19K", "A26V", "A27T", "D38A", "M48I", "R59Q", "D98E", "Y102W"], "p1": ["L5F", "S8P", "H9N"], "p17": ["R30K", "K76R", "F79Y", "A83V", "R91K", "M104I", "V107A", "K109N"], "p2": ["Q6H", "A7V", "A11G"], "p24": ["V11T", "V27I", "T83A", "V86A", "H87Q", "A88V", "I91F", "Q112A", "I115V", "S146C", "S149G", "T178S", "S200T", "A204G", "T216I"], "p6": ["S3G", "R16S", "E20K", "L35V"], "p7": ["K41Q"], "pro": ["I13V", "R41K"], "rev": ["K39R", "I55L", "R99S"], "tat": ["K24R", "K63A", "K71E", "I76F", "S77R"], "vif": ["S46N", "R158K", "I159T", "K176E", "E185G"], "vpr": ["Q3R", "I84L", "N91H", "G94S"], "vpu": ["E5Q", "V10A", "A27V", "K35Q", "E58D", "D62E"]}, "labels": {"aa": "INT: D25E, L101V, V165I; RT-p51: E43D, K64R, V179A, L310I, R390K; RT-p66: E43D, K64R, V179A, L310I, R390K; gp120: R18K, A73V, D105N, -106A, -107T, -108N, -110T, -111T, -113N, -114T, -115T, -116D, K141Q, V144S, K150R, D157N, N160T, N161D, S162E, N248E, L249I, K262E, S272T, I279L, V288T, Y302H, E309K, E312K, T318A, E319K, K322E, E323G, H324Y, F325V, P336S, S365K, -371T, -372G, -373N, -374E, -375T, -376T, -377G, -383T, D384G, R391K, N397R, V402I, S412R, V418I, N432R, N437T; gp41: K80T, I91V, S101L, T102S, K106R, N129S, E137D, S138A, D163G, N166Q, H211L, Q212P, R221G, G281A, S290L, A307I, R342G; nef: V16I, R19K, A26V, A27T, D38A, M48I, R59Q, D98E, Y102W; p1: L5F, S8P, H9N; p17: R30K, K76R, F79Y, A83V, R91K, M104I, V107A, K109N; p2: Q6H, A7V, A11G; p24: V11T, V27I, T83A, V86A, H87Q, A88V, I91F, Q112A, I115V, S146C, S149G, T178S, S200T, A204G, T216I; p6: S3G, R16S, E20K, L35V; p7: K41Q; pro: I13V, R41K; rev: K39R, I55L, R99S; tat: K24R, K63A, K71E, I76F, S77R; vif: S46N, R158K, I159T, K176E, E185G; vpr: Q3R, I84L, N91H, G94S; vpu: E5Q, V10A, A27V, K35Q, E58D, D62E"}}}]}]}, {"name": "NODE_0000678", "node_attrs": {"div": 0.10757999999999998, "clade_membership": 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"I31V", "V112I", "Q136K", "G163E"], "RT-p51": ["A98S", "S123N", "T200I"], "RT-p66": ["A98S", "S123N", "T200I", "L452V", "H483Q"], "gp120": ["E59K", "N108-", "K143Q", "D157N", "N160S", "N161G", "S162E", "K174T", "K212S", "E240G", "K262E", "E265K", "T277K", "T280G", "T292P", "G296A", "K300A", "V305I", "E309K", "V313T", "E319K", "V332Y", "P336H", "K361Q", "S365E", "W367-", "S414I", "N432I", "S435T", "A436N", "I447T"], "gp41": ["K80T", "F81L", "S101R", "N105D", "F108L", "I118T", "E119Q", "N140S", "D163N", "R214K", "D230G", "S239T", "I264A", "A268T", "T270A", "R277S", "S290L"], "nef": ["T23A", "P25T", "A27T", "R59K", "L100M", "Y102H", "E108D", "I133V", "D149E", "S188K", "L198K"], "p17": ["G49E", "F79Y", "I82V", "Q108R"], "p2": ["-12G"], "p24": ["D128E"], "p6": ["S25T", "D32N"], "rev": ["V52I", "R53C", "A54E", "E57D", "S61G", "T82S", "S86N", "D88G"], "tat": ["P3L", "G79R"], "vif": ["L59M", "N186H"], "vpr": ["E13A", "H15Y", "N28S", "Y45H", "I60L", "A93T"], "vpu": ["T2S", "E5Q", "L18A", "I33L", "R37K"]}, "labels": {"aa": "INT: S17N, I31V, V112I, Q136K, G163E; RT-p51: A98S, S123N, T200I; RT-p66: A98S, S123N, T200I, L452V, H483Q; gp120: E59K, N108-, K143Q, D157N, N160S, N161G, S162E, K174T, K212S, E240G, K262E, E265K, T277K, T280G, T292P, G296A, K300A, V305I, E309K, V313T, E319K, V332Y, P336H, K361Q, S365E, W367-, S414I, N432I, S435T, A436N, I447T; gp41: K80T, F81L, S101R, N105D, F108L, I118T, E119Q, N140S, D163N, R214K, D230G, S239T, I264A, A268T, T270A, R277S, S290L; nef: T23A, P25T, A27T, R59K, L100M, Y102H, E108D, I133V, D149E, S188K, L198K; p17: G49E, F79Y, I82V, Q108R; p2: -12G; p24: D128E; p6: S25T, D32N; rev: V52I, R53C, A54E, E57D, S61G, T82S, S86N, D88G; tat: P3L, G79R; vif: L59M, N186H; vpr: E13A, H15Y, N28S, Y45H, I60L, A93T; vpu: T2S, E5Q, L18A, I33L, R37K"}}}, {"name": "KR019772", "node_attrs": {"div": 0.15013999999999997, "accession": "KR019772", "clade_membership": {"value": "CRF74_01B"}, "country": {"value": "MY"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11MYPR416"}, "LANL_subtype": {"value": "CRF74_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A265G", "T307C", "G424A", "G438A", "C467T", "C483T", "A513T", "T531C", "C535A", "A558G", "G597A", "C669A", "A714C", "T767C", "A944C", "G1090A", "T1094C", "A1176G", "G1192A", "G1199A", "C1214T", "T1244G", "A1263T", "C1406T", "T1421C", "A1448G", "C1453T", "G1493A", "C1523T", "C1550T", "G1640A", "C1782T", "G1794A", "A1832G", "A1839G", "G1981A", "T2171C", "T2245C", "G2473A", "A2545C", "G2602A", "A2626G", "A2678C", "A2716G", "A2794G", "G2909C", "C2968T", "C3023A", "G3085A", "G3097A", "T3118C", "G3192A", "A3196G", "A3200G", "A3214G", "A3230G", "T3308C", "T3358G", "T3399C", "G3435A", "G3449T", "G3463A", "G3538C", "A3580T", "A3611C", "T3844G", "T3857C", "G3869A", "A3934G", "T4039A", "C4132T", "C4198T", "C4286T", "G4610A", "C4665T", "T4776A", "T4991C", "T4995G", "C5006T", "T5203C", "A5246C", "A5291G", "T5354C", "A5396G", "C5454T", "A5462T", "T5467A", "A5484G", "G5561A", 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"T8923G", "T8967C", "A8977G", "T8993C", "T9014G", "C9017T"], "INT": ["V32I", "H171Y", "D279N"], "RT-p51": ["M178I", "I195L", "M245V", "A272P", "L310I", "R366K", "T369A", "S379G", "Y405H", "V435A"], "RT-p66": ["M178I", "I195L", "M245V", "A272P", "L310I", "R366K", "T369A", "S379G", "Y405H", "V435A", "S447N", "I506L"], "gp120": ["V40I", "D105N", "-106V", "-107S", "-109T", "-110T", "-111N", "-112D", "-113L", "-114N", "-115S", "-116I", "-117G", "-118N", "-119I", "-120T", "-121D", "-122E", "-123V", "E125-", "I126-", "M133I", "R138K", "K141R", "Y145S", "N160K", "S162N", "L249I", "I279L", "V288I", "N311H", "E312K", "F325V", "N327-", "K329G", "V332N", "Q334R", "-368G", "-369N", "-370G", "-371T", "-375E", "-376V", "-377E", "-378N", "-379K", "-380T", "R476G"], "gp41": ["A96N", "E133Q", "D148E", "N166R", "I210T", "H211R", "E225G", "S239N", "A245V"], "nef": ["I10L", "Q15R", "M48I", "S55C", "V153I", "A158T", "M194R"], "p17": ["R30K", "V35I", "L50F", "I60L", "S66P", "T67N", "I75V", "V88I", "Q112K", "K127Q"], "p2": ["-10V", "A11G"], "p24": ["E71D", "S120N", "S149G", "R154K", "T178S"], "p6": ["S38L", "A39T"], "pro": ["T12A", "K14R"], "rev": ["V16I", "L78I", "T82N"], "tat": ["N7S", "K29I", "C31S", "S62N", "P68L", "S75P", "I76V"], "vif": ["M8I", "H27Y", "L64I", "R131S", "S137A"], "vpr": ["N48H", "M63V"], "vpu": ["L16I", "N44D", "D73N"]}, "labels": {"aa": "INT: V32I, H171Y, D279N; RT-p51: M178I, I195L, M245V, A272P, L310I, R366K, T369A, S379G, Y405H, V435A; RT-p66: M178I, I195L, M245V, A272P, L310I, R366K, T369A, S379G, Y405H, V435A, S447N, I506L; gp120: V40I, D105N, -106V, -107S, -109T, -110T, -111N, -112D, -113L, -114N, -115S, -116I, -117G, -118N, -119I, -120T, -121D, -122E, -123V, E125-, I126-, M133I, R138K, K141R, Y145S, N160K, S162N, L249I, I279L, V288I, N311H, E312K, F325V, N327-, K329G, V332N, Q334R, -368G, -369N, -370G, -371T, -375E, -376V, -377E, -378N, -379K, -380T, R476G; gp41: A96N, E133Q, D148E, N166R, I210T, H211R, E225G, S239N, A245V; nef: I10L, Q15R, M48I, S55C, V153I, A158T, M194R; p17: R30K, V35I, L50F, I60L, S66P, T67N, I75V, V88I, Q112K, K127Q; p2: -10V, A11G; p24: E71D, S120N, S149G, R154K, T178S; p6: S38L, A39T; pro: T12A, K14R; rev: V16I, L78I, T82N; tat: N7S, K29I, C31S, S62N, P68L, S75P, I76V; vif: M8I, H27Y, L64I, R131S, S137A; vpr: N48H, M63V; vpu: L16I, N44D, D73N"}}}]}]}, {"name": "NODE_0000681", "node_attrs": {"div": 0.10978999999999998, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A426C", "C2635T", "G2727A", "T3355G", "G3398A", "G3409A", "G3952A", "C4826A", "G5236A", "A5563G", "T6211A", "A6212G", "C6216A", "T6220G", "A6222C", "-6225A", "-6229A", "T6343C", "G6779A", "G6788A", "-6955C", "-6960A", "G7790A", "A8093C", "G8216A", "G8330T", "G8558A"], "RT-p51": ["S211N", "V435I"], "RT-p66": ["S211N", "V435I"], "gp120": ["D105-", "T181S", "E312K", "S365N", "S414K"], "gp41": ["I264L", "D305N", "A307T"], "p17": ["M31L"], "tat": ["K63E"], "vif": ["H80Q"]}, "labels": {"aa": "RT-p51: S211N, V435I; RT-p66: S211N, V435I; gp120: D105-, T181S, E312K, S365N, S414K; gp41: I264L, D305N, A307T; p17: M31L; tat: K63E; vif: H80Q"}}, "children": [{"name": "results/subtype_trees/CRF48_01B.nwk", "node_attrs": {"div": 0.13674999999999998, "clade_membership": {"value": "CRF48_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A562G", "A599G", "A620G", "G629A", "T636C", "G647T", "C655T", "C691A", "A716G", "T774G", "G803A", "T851C", "G866A", "C897T", "A899G", "A995T", "A1073G", "C1137T", "C1247T", "A1253G", "T1358A", "G1364A", "C1442G", "T1484C", "T1547C", "C1679T", "C1680A", "A1685G", "C1689A", "G1778A", "A1804G", "A1819G", "A1855G", "T1864C", "G1903C", "A1906G", "G1969A", "A1972G", "T1986C", "T1987C", "T1996C", "A2003C", "A2005C", "C2057A", "A2063C", "A2075C", "T2083C", "T2149C", "G2164A", "T2245C", "C2263T", "G2293A", "G2314A", "C2353T", "A2368G", "A2410C", "A2419C", "A2422G", "A2431T", "T2443C", "A2462G", "G2463A", "A2470G", "C2485T", "A2518G", "C2521T", "G2542T", "G2578A", "A2579T", "C2605T", "T2613A", "A2615C", "G2630A", "G2656A", "A2665G", "G2755A", "G2828C", "C2831T", "A2918C", "C2930T", "G2951A", "A3073G", "T3450G", "A3748G", "G3787A", "A3795G", "G3816A", "A3836G", "A3891G", "A4045T", "G4195A", "T4216C", "A4555G", "G4616A", "A4664G", "C4728A", "A4768G", "T4827C", "A4863G", "C4911T", "T4917C", "C5003T", "C5018T", "G5065A", "C5213A", "C5215A", "T5245C", "T5275G", "T5412G", "C5425A", "G5427A", "G5493A", "C5551T", "G5556C", "A5557C", "C5579T", "A5587G", "G5620C", "A5711G", "G5734A", "A5737G", "G5739A", "G5755A", "T5808G", "G5824A", "C5866T", "A5957G", "G6029A", "C6116T", "C6165G", "T6169-", "C6183-", "C6189-", "A6194T", "C6196A", "A6198C", "C6202A", "-6203G", "-6204G", "-6205C", "-6207A", "-6217G", "G6218A", "-6226T", "-6230G", "T6325A", "T6334C", "A6339G", "A6425G", "A6490C", "A6505G", "A6535G", "C6613G", "C6618A", "A6753G", "A6767G", "A6780C", "T6794C", "G6802A", "A6810G", "T6815C", "G6841A", "C6843A", "A6844C", "T6849C", "G6940A", "-6957T", "-6958A", "-6959G", "A7027G", "G7054A", "G7058A", "A7094G", "G7168A", "A7312C", "C7463A", "T7489C", "A7542C", "C7642T", "T7656C", "C7684T", "A7703T", "G7712A", "A7721G", "T7748C", "A7862G", "C7929T", "G8019A", "T8171A", "G8181T", "T8182G", "A8263G", "G8349A", "T8366C", "G8404A", "G8479C", "T8504C", "G8518A", "A8531G", "G8588A", "C8669T", "A8688C", "T8740C", "C8741T", "A8793C", "A8869C", "A8967G", "A8970G", "G8971T", "T8972A", "T8974C", "C8975T", "T8976A", "A8978C", "C8979T", "T8980A", "G8982A", "T9014G", "A9042G", "T9097G", "G9132A"], "INT": ["K7R", "R14K", "T21A", "N39S", "V281M"], "RT-p51": ["K104R", "S123D", "S162C", "I173K", "K174Q", "V179I", "E245Q", "K275Q", "A286T"], "RT-p66": ["K104R", "S123D", "S162C", "I173K", "K174Q", "V179I", "E245Q", "K275Q", "A286T", "L452R"], "gp120": ["D21E", "E59K", "N108-", "K127-", "D157E", "T191A", "T255N", "S278R", "D294E", "K300R", "E309T", "E319G", "-326K", "K329I", "V332-", "-369E"], "gp41": ["K80T", "I118T", "I134L", "E137K", "N140D", "I187V", "S239N", "S290I", "G293V"], "nef": ["G3S", "R21K", "S46T", "N116H", "K151Q", "E176A", "R192K"], "p17": ["K76R", "A119E"], "p24": ["L15V"], "p6": ["L1I", "K42R", "N47S"], "pro": ["E35D", "I36M", "L63P", "K69H", "M89L", "I93L"], "rev": ["R14T", "V108D", "S112A"], "tat": ["N12K", "Q17K", "P59S", "Q60H", "S61R", "P68L", "K71E"], "vif": ["H48N", "E61G", "N93D", "N110H", "R160K"], "vpr": ["P37T"], "vpu": ["E5Q", "K35R", "V43I", "K44E", "A50T", "D73N"]}, "labels": {"aa": "INT: K7R, R14K, T21A, N39S, V281M; RT-p51: K104R, S123D, S162C, I173K, K174Q, V179I, E245Q, K275Q, A286T; RT-p66: K104R, S123D, S162C, I173K, K174Q, V179I, E245Q, K275Q, A286T, L452R; gp120: D21E, E59K, N108-, K127-, D157E, T191A, T255N, S278R, D294E, K300R, E309T, E319G, -326K, K329I, V332-, -369E; gp41: K80T, I118T, I134L, E137K, N140D, I187V, S239N, S290I, G293V; nef: G3S, R21K, S46T, N116H, K151Q, E176A, R192K; p17: K76R, A119E; p24: L15V; p6: L1I, K42R, N47S; pro: E35D, I36M, L63P, K69H, M89L, I93L; rev: R14T, V108D, S112A; tat: N12K, Q17K, P59S, Q60H, S61R, P68L, K71E; vif: H48N, E61G, N93D, N110H, R160K; vpr: P37T; vpu: E5Q, K35R, V43I, K44E, A50T, D73N", "clade": "CRF48_01B"}}, "children": [{"name": "GQ175882", "node_attrs": {"div": 0.15888, "accession": "GQ175882", "clade_membership": {"value": "CRF48_01B"}, "country": {"value": "MY"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07MYKT016"}, "LANL_subtype": {"value": "CRF48_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A359G", "A388G", "G428A", "A470C", "G480A", "A513T", "T536A", "A692G", "A776T", "A959G", "G977A", "T1148C", "C1238T", "A1346G", "A1412G", "C1556T", "G1576T", "A1578G", "A1580G", "C1644A", "C1656T", "G1664A", "C1676T", "A1743G", "T1752C", "A1784G", "T1792C", "G2008A", "G2229A", "T2353G", "G2459A", "A2629G", "A2693G", "A2727G", "T2873C", "A2969G", "A3115G", "T3118C", "A3145G", "A3204G", "G3279A", "A3520G", "T3530C", "T3544G", "G3877A", "T3904C", "T3946C", "A4096G", "C4162T", "A4279G", "T4316C", "A4429C", "T4543A", "G4597A", "G4673A", "T4712C", "A4774C", "T5027C", "G5137A", "T5237C", "A5246T", "T5251A", "A5290G", "A5302G", "C5482A", "G5545A", "T5628C", "C5687G", "T5688C", "A5781G", "T5793G", "A5848G", "T5899G", "G5915A", "C5924T", "T5953G", "A6024C", "A6152G", "T6166C", "A6167T", "A6173-", "A6176-", "A6177-", "T6178-", "G6179-", "T6180-", "C6181-", "A6182-", "T6184-", "A6185-", "A6186-", "A6188-", "G6195T", "A6196T", "A6200T", "A6202G", "A6208C", "G6212A", "T6213C", "A6229C", "A6281C", "A6332G", "C6363A", "T6364C", "A6394G", "A6450G", "G6451A", "T6460G", "A6489G", "G6533A", "A6574T", "G6611A", "C6612T", "T6676G", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "A6692C", "C6693G", "A6695T", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6714G", "A6715G", "T6717C", "T6722C", "A6723T", "G6726C", "C6729G", "C6807A", "T6808A", "-6833C", "-6834A", "-6835G", "A6840G", "C6844T", "A6881G", "T6883C", "C6925T", "A6937T", "C6938T", "A6948T", "A6950T", "C6951G", "T6952C", "T6953A", "G6954T", "C6955A", "-6956G", "T6957G", "G6959A", "-6961T", "-6962G", "-6963A", "-6964T", "-6965A", "-6966C", "-6967C", "-6968A", "-6969T", "-6970G", "-6971T", "-6972G", "-6973T", "-6974A", "-6975A", "-6976T", "-6977A", "-6978G", "-6979A", "A6992-", "T7003-", "A7005-", "C7006-", "G7026A", "G7056A", "T7059C", "A7088G", "G7089A", "G7106A", "C7127A", "A7152C", "A7155C", "A7195G", "A7197G", "G7366A", "C7452T", "C7511T", "C7608G", "G7633T", "G7640A", "A7701C", "G7702A", "T7747G", "G7868A", "A7941C", "A7947G", "A7964G", "A7977G", "A8023C", "G8042A", "A8191G", "G8219A", "C8232T", "A8273G", "G8274C", "G8354A", "T8371A", "T8374C", "G8398A", "A8459C", "A8475G", "C8500G", "T8505G", "G8506A", "T8507G", "G8508A", "T8509A", "C8514G", "T8515C", "G8516T", "A8517G", "A8519G", "G8531T", "C8717A", "A8726G", "A8744T", "A8746C", "C8789T", "A8798C", "G8904T", "A8922C", "C8934A", "T8975A", "A9151G"], "INT": ["F181L", "D256E"], "RT-p51": ["V35I", "G45E", "D86E", "R104K", "E122K", "T200A", "N211S", "I292V", "E370G", "R395K"], "RT-p66": ["V35I", "G45E", "D86E", "R104K", "E122K", "T200A", "N211S", "R238K", "I292V", "E370G", "R395K", "H483Q"], "gp120": ["E21N", "H33Q", "T35A", "H57P", "T100A", "-105D", "-106D", "-107V", "-108R", "E125-", "V126-", "K143Q", "N160D", "T170N", "K199R", "D202E", "K212S", "V227M", "E240D", "A253M", "N274K", "I279L", "T280H", "Q287R", "V288A", "Y290L", "R291T", "T292R", "E294I", "A318E", "K326Q", "N328R", "I329N", "T330-", "-332T", "I343V", "K361N", "N365I", "T366C", "C367I", "-368G", "E369N", "-370D", "-371T", "-372M", "-373C", "-374N", "-375R", "R391K", "G401E", "V402T", "S412D", "K414E", "V418I", "L425I", "N433D", "N437T", "E438-", "T439-", "I447M", "K448R"], "gp41": ["A50V", "T102S", "E110D", "E133A", "D148E", "D163N", "A189T", "P209L", "Q213P", "E215G", "R221G", "E225G", "D247N", "I290T", "A306T", "A310V", "R324A", "A343S"], "nef": ["I10K", "V11A", "R19K", "K39N", "S45G", "A53G", "S55E", "V56N", "L58A", "R59E", "A60V", "E63D", "I133T", "R134S", "Y135S", "E152D", "I194L", "L198M"], "p1": ["L5I", "H9Y"], "p17": ["K18R", "G49S", "I60L", "T115Q"], "p2": ["-12G"], "p6": ["T22A", "S25P"], "p7": ["W37L", "K38E"], "rev": ["K39R", "I59L", "G65E", "K115E"], "tat": ["L36I", "G57R", "N80D"], "vif": ["R4K", "M29I", "K63T", "Y111H", "R184K"], "vpr": ["Y45H", "N48Y"], "vpu": ["A27G", "D62E", "N81D"]}, "labels": {"aa": "INT: F181L, D256E; RT-p51: V35I, G45E, D86E, R104K, E122K, T200A, N211S, I292V, E370G, R395K; RT-p66: V35I, G45E, D86E, R104K, E122K, T200A, N211S, R238K, I292V, E370G, R395K, H483Q; gp120: E21N, H33Q, T35A, H57P, T100A, -105D, -106D, -107V, -108R, E125-, V126-, K143Q, N160D, T170N, K199R, D202E, K212S, V227M, E240D, A253M, N274K, I279L, T280H, Q287R, V288A, Y290L, R291T, T292R, E294I, A318E, K326Q, N328R, I329N, T330-, -332T, I343V, K361N, N365I, T366C, C367I, -368G, E369N, -370D, -371T, -372M, -373C, -374N, -375R, R391K, G401E, V402T, S412D, K414E, V418I, L425I, N433D, N437T, E438-, T439-, I447M, K448R; gp41: A50V, T102S, E110D, E133A, D148E, D163N, A189T, P209L, Q213P, E215G, R221G, E225G, D247N, I290T, A306T, A310V, R324A, A343S; nef: I10K, V11A, R19K, K39N, S45G, A53G, S55E, V56N, L58A, R59E, A60V, E63D, I133T, R134S, Y135S, E152D, I194L, L198M; p1: L5I, H9Y; p17: K18R, G49S, I60L, T115Q; p2: -12G; p6: T22A, S25P; p7: W37L, K38E; rev: K39R, I59L, G65E, K115E; tat: L36I, G57R, N80D; vif: R4K, M29I, K63T, Y111H, R184K; vpr: Y45H, N48Y; vpu: A27G, D62E, N81D"}}}, {"name": "CRF48_01B_NODE_0000001", "node_attrs": {"div": 0.13742, "clade_membership": {"value": "CRF48_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C583T", "T662G", "G1640A", "A1926G", "A2406G", "A2498G", "A3218G", "G3869A", "A4182G", "A4677G", "G4786A", "T5197C", "G5385C", "A5594G", "A6066G", "C6684A", "A6734G", "T6735A", "A6786G", "-6985A", "-6986A", "-6987A", "-6988T", "-6989A", "-6991T", "-6993C", "-6994C", "-6995A", "-6998T", "-6999G", "-7000T", "-7001A", "-7002A", "C7165T", "A7626T", "A8050G", "C8172T", "A8933G"], "INT": ["V32I", "Q136R"], "RT-p51": ["I135V", "M178I", "I375V"], "RT-p66": ["I135V", "M178I", "I375V"], "gp120": ["N71S", "-115S", "T277K", "N311S", "N327K", "I331-", "-378N", "-380T", "-382C", "-383N"], "p17": ["A83V", "N109K"], "p6": ["S38L"], "pro": ["K43R"], "rev": ["T68A"], "vif": ["I31V", "R67K"], "vpr": ["G94R"]}, "labels": {"aa": "INT: V32I, Q136R; RT-p51: I135V, M178I, I375V; RT-p66: I135V, M178I, I375V; gp120: N71S, -115S, T277K, N311S, N327K, I331-, -378N, -380T, -382C, -383N; p17: A83V, N109K; p6: S38L; pro: K43R; rev: T68A; vif: I31V, R67K; vpr: G94R"}}, "children": [{"name": "GQ175883", "node_attrs": {"div": 0.15886999999999998, "accession": "GQ175883", "clade_membership": {"value": "CRF48_01B"}, "country": {"value": "MY"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07MYKT021"}, "LANL_subtype": {"value": "CRF48_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T341C", "G354A", "A513C", "T567C", "G592T", "A605G", "G654A", "A656G", "A944G", "C1060A", "A1089G", "A1196G", "A1279G", "G1430A", "C1453G", "G1586A", "A1714C", "A1778G", "T1796C", "C1903A", "G2008A", "C2075A", "A2200G", "T2299C", "G2311A", "A2345G", "A2414T", "G2459A", "A2510G", "A2626G", "G2665A", "G2686A", "A2722G", "G2725A", "A2794G", "T2831C", "A2888G", "C3030A", "G3073A", "A3190C", "T3303C", "T3323C", "T3412C", "T3577C", "A3592G", "A3607G", "C3688T", "A3768G", "A3808C", "T3853C", "C4009T", "A4062G", "T4077C", "C4126T", "A4142G", "C4198T", "G4351A", "A4384G", "C4534T", "G4555A", "T4702G", "A4760G", "G4765A", "A4847T", "T4995A", "C5006T", "A5090G", "A5215G", "G5272A", "T5293A", "A5427G", "T5430A", "A5480G", "A5560C", "T5579C", "G5599A", "T5602A", "A5623G", "A5644G", "T5679C", "C5687G", "G5737A", "A5792G", "T5793G", "C5802T", "A5824G", "A5846G", "T5917A", "A5921G", "T5953A", "A5955T", "C5958A", "A6029G", "G6088A", "T6139C", "A6167G", "-6174A", "-6175A", "G6179A", "T6180A", "-6183A", "A6185T", "-6187G", "A6188T", "-6189G", "C6190G", "T6193A", "A6196G", "T6199A", "G6201C", "T6213G", "G6217T", "A6219T", "A6261T", "A6262C", "A6275C", "T6287C", "A6333G", "T6340A", "T6341A", "C6343T", "G6345A", "T6355G", "G6392A", "A6514G", "G6605A", "G6613T", "A6616G", "A6672C", "T6688G", "A6691G", "-6697G", "A6703-", "A6715T", "A6727C", "T6745A", "A6746G", "G6750A", "A6751G", "G6753A", "A6798C", "G6810A", "-6830G", "A6836-", "C6858A", "T6863G", "C6875A", "A6947G", "-6956A", "-6990A", "-6996G", "-6997G", "-7004C", "A7007G", "A7036G", "T7039C", "A7058G", "G7089A", "G7094A", "G7132A", "A7152G", "A7155G", "A7157G", "A7161G", "A7252G", "A7322C", "C7480T", "G7501A", "G7589A", "C7590A", "A7613G", "T7627G", "G7658C", "G7700A", "A7701G", "G7702T", "A7711G", "A7712G", "G7721A", "T7747C", "G7750A", "A7818G", "G7871-", "T7872-", "G7873-", "C7874-", "T7875-", "T7876-", "T7877-", "C7878-", "T7879-", "A7885G", "T7929C", "A7931C", "A7992G", "A8019G", "T8047C", "T8122C", "T8181C", "G8231A", "G8241A", "G8242A", "T8243G", "G8255A", "A8271G", "C8291A", "T8330G", "A8349G", "T8371A", "G8393A", "A8404G", "G8506C", "T8507G", "A8518G", "A8525G", "A8635G", "G8666T", "C8688A", "C8717A", "A8746T", "A8827G", "G8852A", "C8869A", "G8904A", "C8905G", "A8917G", "A8938G", "A8972T", "G8981A", "G8983A", "T8986A", "A9132G"], "INT": ["E11D", "E96G", "L101P", "S123G", "I203M"], "RT-p51": ["V35M", "T84A", "T107S", "E122K", "T139A", "N265D", "T312N", "M403T", "W410R"], "RT-p66": ["V35M", "T84A", "T107S", "E122K", "T139A", "R238K", "N265D", "T312N", "M403T", "W410R", "K558R"], "gp120": ["T23A", "H33Q", "E34V", "T35E", "K59E", "T104-", "E125N", "V126I", "-127D", "E136V", "K141Q", "Y145H", "N160S", "S162R", "N167K", "V180I", "K212N", "D251N", "N273T", "I279M", "I281M", "Q287H", "R291S", "D297E", "I298V", "R299K", "R300K", "K315T", "G319E", "K326D", "P335Q", "S337A", "L341I", "N365D", "-368I", "-379N", "-381R", "-384H", "T385A", "S412N", "N433S", "N434S", "N435D", "E436G"], "gp41": ["M7L", "A96N", "S104G", "Y108L", "N113D", "E119Q", "E133S", "K137E", "D140N", "D163N", "K172R", "V190-", "L191-", "S192-", "I210L", "D230G", "N239S", "V293A", "A310T", "G313E", "W314G", "V318I", "Q323R", "L330I"], "nef": ["S3G", "I10K", "K21R", "D98G", "E108D", "H116N", "I133T", "Y135F", "N162S", "A176E", "K192R", "H199R"], "p17": ["V7I", "I60L", "W86L", "V107M"], "p2": ["-10G", "A11G"], "p24": ["T110N", "S120G", "N183S"], "p6": ["E12A"], "pro": ["D35E", "L93I"], "rev": ["Y28S", "S67P", "S92P"], "tat": ["Q35R", "S62R", "L68P"], "vif": ["F39C", "G60E", "Y111H", "S137T"], "vpu": ["I6V", "I13V", "A27G", "E44K", "D62G", "N73D", "D80G"]}, "labels": {"aa": "INT: E11D, E96G, L101P, S123G, I203M; RT-p51: V35M, T84A, T107S, E122K, T139A, N265D, T312N, M403T, W410R; RT-p66: V35M, T84A, T107S, E122K, T139A, R238K, N265D, T312N, M403T, W410R, K558R; gp120: T23A, H33Q, E34V, T35E, K59E, T104-, E125N, V126I, -127D, E136V, K141Q, Y145H, N160S, S162R, N167K, V180I, K212N, D251N, N273T, I279M, I281M, Q287H, R291S, D297E, I298V, R299K, R300K, K315T, G319E, K326D, P335Q, S337A, L341I, N365D, -368I, -379N, -381R, -384H, T385A, S412N, N433S, N434S, N435D, E436G; gp41: M7L, A96N, S104G, Y108L, N113D, E119Q, E133S, K137E, D140N, D163N, K172R, V190-, L191-, S192-, I210L, D230G, N239S, V293A, A310T, G313E, W314G, V318I, Q323R, L330I; nef: S3G, I10K, K21R, D98G, E108D, H116N, I133T, Y135F, N162S, A176E, K192R, H199R; p17: V7I, I60L, W86L, V107M; p2: -10G, A11G; p24: T110N, S120G, N183S; p6: E12A; pro: D35E, L93I; rev: Y28S, S67P, S92P; tat: Q35R, S62R, L68P; vif: F39C, G60E, Y111H, S137T; vpu: I6V, I13V, A27G, E44K, D62G, N73D, D80G"}}}, {"name": "GQ175881", "node_attrs": {"div": 0.15436999999999998, "accession": "GQ175881", "clade_membership": {"value": "CRF48_01B"}, "country": {"value": "MY"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07MYKT014"}, "LANL_subtype": {"value": "CRF48_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C426A", "C471A", "C535T", "A645G", "A1017C", "T1052C", "G1090A", "T1403C", "G1643A", "A2198G", "A2400G", "A2508C", "A2710G", "A2808G", "A2830C", "A2887G", "G2909C", "A2919G", "A2956G", "A2974G", "C3252T", "G3435A", "G3450A", "G3538A", "G3718A", "A3866G", "C4076G", "T4234A", "G4267A", "A4397G", "A4411G", "T4412A", "G4479A", "G4480C", "T4585C", "G4870A", "C4917T", "T4995G", "A5005C", "A5282C", "A5555G", "G5587A", "C5620G", "A5626G", "G5627C", "T5917G", "G5939A", "G5957A", "C5974A", "A5995T", "A6019G", "C6023T", "T6072C", "T6096G", "A6132C", "C6145T", "T6146C", "G6147C", "T6155G", "A6157T", "A6159T", "-6169T", "-6170T", "-6171T", "-6172T", "-6174G", "-6175T", "A6177G", "T6178A", "C6181A", "A6182G", "-6183G", "T6184C", "A6186G", "-6187T", "-6189T", "A6192C", "T6194A", "G6195C", "C6198A", "G6203A", "A6207G", "A6211T", "A6216C", "A6218C", "A6221T", "C6222A", "G6224C", "A6225C", "T6226A", "C6256T", "G6280T", "C6318A", "T6322G", "A6324G", "C6397A", "A6471C", "C6477T", "C6490A", "T6523C", "A6525C", "G6526C", "A6529C", "T6531C", "G6532C", "T6534G", "C6540T", "A6544T", "T6546C", "C6548T", "A6580G", "C6599G", "T6643A", "C6661T", "T6676C", "A6686G", "A6759T", "T6838G", "C6854G", "G6910A", "A6932T", "A6935G", "A6936G", "-6956T", 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W99C, K106R, Y108F, N113E, E151A, K154E, N166K, P209L, N305D, V311I, A343L; nef: S55C, V56A, R59N, A60T, Q125D, E177Y, S188A, A190T; p17: L31M, L46I, T67I, I104V; p2: -12G; p24: M96L, S120N; rev: T14A; tat: H60R, E71K; vif: S95N, S137A, N140T; vpr: I60L; vpu: Q5E, S7A"}}}]}]}, {"name": "results/subtype_trees/CRF33_01B.nwk", "node_attrs": {"div": 0.11445999999999998, "clade_membership": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["-180A", "-181G", "-182T", "-183G", "-184G", "-185C", "-186G", "-187C", "-188C", "-189C", "-190G", "-191A", "-192A", "-193C", "C201T", "-215A", "-216A", "-217T", "G1452A", "A2230G", "G2311A", "T2873C", "G3001A", "T4865A", "T5237C", "A5698C", "G5699A", "G5864A", "C6067A", "T6072C", "-6217T", "-6230A", "G6253A", "A6333G", "A6692C", "A6848G", "-6961T", "-6962A", "-6963A", "A7195G", "A7620G", "G7640A", "A8367-", "A8584T", "G8861A", "G8904T", "G8981A"], "gp120": ["D4N", "N71K", "V73A", "N328-", "-371T", "I447M"], "gp41": ["A343S"], "nef": ["Y81F", "M173I"], "vif": ["L64I"], "vpr": ["Y45H"], "vpu": ["R31Q"]}, "labels": {"aa": "gp120: D4N, N71K, V73A, N328-, -371T, I447M; gp41: A343S; nef: Y81F, M173I; vif: L64I; vpr: Y45H; vpu: R31Q", "clade": "CRF33_01B"}}, "children": [{"name": "CRF33_01B_NODE_0000001", "node_attrs": {"div": 0.11518999999999997, "clade_membership": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C426T", "T571A", "C1444T", "A2626C", "G3264A", "C3266T", "G3279A", "G3442A", "G3769A", "A5718G", "C6023T", "G6076T", "C6181T", "G6201A", "G6806A", "T7159A", "G7160A", "G8002A", "G8180A"], "RT-p51": ["E177D", "R390K", "R395K"], "RT-p66": ["E177D", "R390K", "R395K"], "gp120": ["H57Y", "E74D", "M133I", "A318T"], "gp41": ["K106R"], "p2": ["A7V"], "rev": ["V52I"]}, "labels": {"aa": "RT-p51: E177D, R390K, R395K; RT-p66: E177D, R390K, R395K; gp120: H57Y, E74D, M133I, A318T; gp41: K106R; p2: A7V; rev: V52I"}}, "children": [{"name": "AB547463", "node_attrs": {"div": 0.14351999999999998, "accession": "AB547463", "clade_membership": {"value": "CRF33_01B"}, "country": {"value": "ID"}, "date": {"value": 2007.0}, "Strain_name": {"value": "JKT189_C"}, "LANL_subtype": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["-280G", "A303-", "A458G", "C471A", "T506C", "A512G", "A521C", "A561C", "T570C", "C583T", "C596T", "G650A", "G654A", "T668G", "G690-", "C691-", "A692-", "G709A", "A715C", "A730T", "A815G", "T827C", "C830T", "G866A", "G1109A", "C1115T", "A1205G", "C1238T", "C1280T", "T1335C", "A1350T", "C1442A", "T1484C", "G1530-", "G1531-", "A1532-", "A1587C", "G1619A", "A1714C", "G1715A", "G1737C", "C1768A", "A1781G", "T1791G", "A1857G", "G1920A", "A1993G", "T2066C", "T2071C", "T2206C", "T2299C", "A2320G", "C2356T", "A2362G", "T2440C", "G2578A", "T2581G", "A2592G", "A2593G", "T2620C", "A2665C", "A2677T", "A2695G", "A2698G", "A2710G", "T2770C", "G2909C", "A2959T", "G3015A", "A3025G", "A3046C", "C3067T", "C3075T", "T3118C", "G3169T", "C3232T", "C3253A", "A3283G", "G3307A", "A3400G", "G3439A", "C3499T", "T3577C", "C3610T", "T3668C", "A3682C", "A3709G", "A3724G", "T3865C", "T3962G", "T4147A", "C4210T", "T4216C", "G4223A", "A4531G", "T4617G", "G4636A", "G4642A", "A4650C", "A4671G", "A4695G", "A4696G", "A4709G", "T4776A", "A4781G", "A4826T", "A4863G", "A4865C", "C4914A", "G4978A", "A4988G", "G5066A", "G5199A", "T5356C", "A5357G", "C5432A", "A5434G", "G5437A", "A5462T", "G5545C", "A5548C", "A5581G", "C5584T", "A5587G", "A5611T", "T5636C", "G5647A", "C5687G", "T5688C", "A5694G", "T5696G", "A5710C", "T5793G", "G5800C", "C5801T", "C5806T", "G5824A", "T5827C", "A5908G", "T5917G", "C5958G", "A6022G", "C6026A", "A6119C", "T6139C", "C6148T", "A6164G", "T6166C", "A6167T", "A6173-", "A6176-", "A6177-", "T6178-", "T6180C", "C6183A", "A6185T", "A6186T", "-6187G", "T6193A", "-6203G", "-6204T", "-6205G", "-6207A", "A6209T", "T6210A", "A6211G", "G6212C", "T6213A", "A6216T", "G6218T", "A6221G", "C6222A", "G6224A", "A6225T", "-6226A", "A6230G", "A6265G", "C6278G", "T6285C", "C6318A", "A6319G", "A6320C", "A6327G", "A6336G", "T6340A", "T6643C", "A6648T", "C6661A", "C6667T", "C6729G", "A6751G", "A6767G", "G6774A", "A6781T", "A6785T", "A6805G", "G6823A", "G6841T", "C6854G", "C6860T", "A6936G", "T6949C", "-6956C", "-6957T", "-6958A", "-6959A", "A6962G", "-6964A", "-6965A", "-6966C", "-6967C", "-6968A", "-6969T", "-6970G", "-6971G", "-6972G", "-6973A", "-6974A", "A6992-", "-6996A", "-6997C", "-6998T", "-6999G", "-7000C", "-7001A", "-7002A", "-7004G", "A7005G", "G7026A", "G7055A", "T7059C", "A7095C", "T7131C", "A7152G", "A7155G", "A7158G", "C7165T", "C7238G", "G7269A", "G7378A", "C7463A", "T7489A", "A7504G", "G7534A", "T7575C", "C7597T", "T7656C", "G7734A", "G7744A", "A7753G", "G7769A", "A7782G", "A7796T", "T7801C", "A7962G", "C8005G", "A8032G", "T8047C", "A8050G", "C8056T", "C8093G", "G8181T", "T8257G", "G8267A", "C8268T", "G8274T", "C8277T", "C8287T", "T8290C", "A8323T", "G8349A", "G8357C", "A8361G", "-8367T", "A8408G", "T8414C", "G8479C", "T8505A", "A8517G", "G8518A", "A8558G", "G8588A", "T8603A", "A8617G", "C8640T", "G8666T", "C8669T", "T8675C", "C8684T", "T8690C", "C8717A", "G8738A", "A8739G", "A8794C", "C8810A", "A8861G", "A8873C", "T8887A", "A8892C", "A8917G", "T8935A", "G8936A", "A8942T", "A8978G", "A8981G", "G8983A", "-8988T", "T9074G", "-9109T", "A9135G"], "INT": ["L63V", "V150I", "V281G"], "RT-p51": ["V35I", "S162R", "K166R", "M178I", "E194D", "A272P", "R307K", "A327V", "R358S", "I435M"], "RT-p66": ["V35I", "S162R", "K166R", "M178I", "E194D", "R238K", "A272P", "R307K", "A327V", "R358S", "I435M", "E529D"], "gp120": ["D21E", "T35R", "I56M", "L58M", "K89Q", "-105K", "-106S", "-107N", "-109T", "-110V", "-111N", "-112V", "-113S", "K127R", "Q142E", "V144A", "P155Q", "I156L", "D157G", "N159S", "N161S", "E265V", "T280P", "T292R", "G307E", "E309N", "N311Y", "-326N", "K329-", "Q334E", "P336S", "K361R", "-368L", "-369N", "-370E", "-372M", "-373G", "-374N", "-375C", "-376N", "-377G", "R391K", "G401R", "V402A", "K414T", "L426S", "N433S", "N434S", "N435R", "E436N", "Q462E", "R472K"], "gp41": ["I91T", "I118T", "R144K", "A156T", "N160S", "D163N", "T165S", "E220G", "L264V", "R277L", "G293I", "A322I", "R324I", "A325V", "L340F"], "nef": ["G3S", "W5C", "K7E", "S9C", "S46T", "R59E", "K92R", "E108D", "I133V", "K151T", "D156E", "I173M", "E177D", "M182K", "K184Q", "L198Q"], "p17": ["L46I", "E62D", "K76Q", "F79H", "A83V", "I104M", "V107T", "S111R", "A120G", "G121-", "S125N", "K127T", "Y132F"], "p2": ["-10T", "A11G"], "p24": ["T207S"], "p6": ["E12A", "E20Q", "P30Q", "S38V"], "p7": ["G22-", "K41Q"], "pro": ["K20R", "R41K"], "rev": ["E10D", "E11D", "R53G", "T62A", "S67P", "T68A", "P70S", "T82S", "G111D"], "tat": ["T19K", "T20A", "A21T", "K29I", "G57R", "T58P", "P70S", "K71E", "K85E"], "vif": ["W11G", "R17K", "R19K", "N22H", "M29V", "K37G", "Q80H", "N93D", "R131H"], "vpr": ["R32K", "I84T"], "vpu": ["T2S", "V10A", "V14I", "A27G", "F30C", "K35Q", "D62E", "A65L", "L67F", "D73N", "F74L"]}, "labels": {"aa": "INT: L63V, V150I, V281G; RT-p51: V35I, S162R, K166R, M178I, E194D, A272P, R307K, A327V, R358S, I435M; RT-p66: V35I, S162R, K166R, M178I, E194D, R238K, A272P, R307K, A327V, R358S, I435M, E529D; gp120: D21E, T35R, I56M, L58M, K89Q, -105K, -106S, -107N, -109T, -110V, -111N, -112V, -113S, K127R, Q142E, V144A, P155Q, I156L, D157G, N159S, N161S, E265V, T280P, T292R, G307E, E309N, N311Y, -326N, K329-, Q334E, P336S, K361R, -368L, -369N, -370E, -372M, -373G, -374N, -375C, -376N, -377G, R391K, G401R, V402A, K414T, L426S, N433S, N434S, N435R, E436N, Q462E, R472K; gp41: I91T, I118T, R144K, A156T, N160S, D163N, T165S, E220G, L264V, R277L, G293I, A322I, R324I, A325V, L340F; nef: G3S, W5C, K7E, S9C, S46T, R59E, K92R, E108D, I133V, K151T, D156E, I173M, E177D, M182K, K184Q, L198Q; p17: L46I, E62D, K76Q, F79H, A83V, I104M, V107T, S111R, A120G, G121-, S125N, K127T, Y132F; p2: -10T, A11G; p24: T207S; p6: E12A, E20Q, P30Q, S38V; p7: G22-, K41Q; pro: K20R, R41K; rev: E10D, E11D, R53G, T62A, S67P, T68A, P70S, T82S, G111D; tat: T19K, T20A, A21T, K29I, G57R, T58P, P70S, K71E, K85E; vif: W11G, R17K, R19K, N22H, M29V, K37G, Q80H, N93D, R131H; vpr: R32K, I84T; vpu: T2S, V10A, V14I, A27G, F30C, K35Q, D62E, A65L, L67F, D73N, F74L"}}}, {"name": "CRF33_01B_NODE_0000002", "node_attrs": {"div": 0.13181999999999996, "clade_membership": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G256-", "A303T", "C535G", "T567C", "C602T", "G647T", "C655T", "G671A", "G697A", "C707T", "T774G", "T851C", "C897T", "A932G", "G1019A", "G1078C", "G1090A", "G1127A", "C1295A", "T1358A", "G1364A", "A1562G", "G1661A", "G1664A", "C1679T", "C1680A", "A1685G", "C1689A", "A1736G", "T1752C", "T1792C", "A1793G", "T1864C", "C2044T", "G2164A", "A2198G", "T2245C", "A2254G", "G2293A", "G2314A", "A2329G", "A2462G", "G2463A", "T2499G", "A2579T", "A2629G", "T2635C", "C2694T", "G2755A", "A2808G", "C2873T", "G2926A", "G3019A", "C3391T", "T3505G", "T3559C", "A3836G", "G4063A", "C4123T", "G4268A", "A4273G", "A4664G", "T4742C", "G4859A", "A4864C", "C4911A", "C4977A", "T4991C", "C5003T", "C5006T", "G5065A", "G5075A", "A5246G", "C5248A", "C5393A", "C5549A", "A5564C", "T5602G", "T5695A", "C5698A", "G5734A", "T5736C", "A5784G", "A5817G", "T5899A", "T5964C", "T5971C", "G5972A", "C5974T", "A6194G", "-6204C", "-6207G", "A6208C", "G6220A", "T6287C", "A6303G", "T6322G", "A6336C", "T6337A", "A6338G", "T6340G", "T6382G", "G6392A", "A6425G", "T6562C", "C6599A", "C6661T", "A6689-", "C6693-", "A6752C", "A6779G", "T6794C", "G6821A", "C6826T", "T6849A", "C6850A", "-6969G", "-6971A", "-6989A", "-6991C", "T7009C", "T7014C", "A7027G", "A7063G", "A7149G", "G7195A", "G7309A", "T7489C", "G7589A", "C7590A", "T7604A", "C7605A", "C7606A", "G7633A", "T7748C", "A7790G", "G7807A", "G7939T", "A7992G", "T8171A", "C8172T", "T8196C", "A8216G", "C8238G", "G8375-", "G8469A", "A8519C", "A8531C", "A8812C", "A8938G", "G8982A", "T9014G"], "INT": ["T21A", "V165I"], "RT-p51": ["S123D", "I135R", "S162C", "T200I", "K238R"], "RT-p66": ["S123D", "I135R", "S162C", "T200I"], "gp120": ["V37A", "V40I", "V126I", "Y145H", "K150R", "I156M", "N161T", "S162E", "V180I", "T191A", "L249I", "I279V", "T280H", "K300Q", "V305I", "E323K", "-328N", "V332E", "-379N", "T385-", "I387T", "N432-", "E436K", "M447I"], "gp41": ["M54L", "A96N", "S101K", "Q212H", "D230G", "S290I", "G293S", "I298T", "N305D", "A312G"], "nef": ["V43I", "R59S", "E63D", "Q125H", "N157T", "H199R"], "p17": ["T67S", "F79Y", "G121D"], "p2": ["Q6H"], "p24": ["L15V", "M96I", "G116A", "S120N"], "p6": ["L1I", "S25P", "S50L"], "rev": ["L12I", "A31S", "V108D", "G111E"], "tat": ["P6H", "T58N", "E63A", "S77T"], "vif": ["I64L", "N93T", "L109I", "N110H", "R131S", "R160K"], "vpr": ["N48E"], "vpu": ["F30I", "Q31K", "V43I"]}, "labels": {"aa": "INT: T21A, V165I; RT-p51: S123D, I135R, S162C, T200I, K238R; RT-p66: S123D, I135R, S162C, T200I; gp120: V37A, V40I, V126I, Y145H, K150R, I156M, N161T, S162E, V180I, T191A, L249I, I279V, T280H, K300Q, V305I, E323K, -328N, V332E, -379N, T385-, I387T, N432-, E436K, M447I; gp41: M54L, A96N, S101K, Q212H, D230G, S290I, G293S, I298T, N305D, A312G; nef: V43I, R59S, E63D, Q125H, N157T, H199R; p17: T67S, F79Y, G121D; p2: Q6H; p24: L15V, M96I, G116A, S120N; p6: L1I, S25P, S50L; rev: L12I, A31S, V108D, G111E; tat: P6H, T58N, E63A, S77T; vif: I64L, N93T, L109I, N110H, R131S, R160K; vpr: N48E; vpu: F30I, Q31K, V43I"}}, "children": [{"name": "EU031913", "node_attrs": {"div": 0.15110999999999997, "accession": "EU031913", "clade_membership": {"value": "CRF33_01B"}, "country": {"value": "MY"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07MYKLD47"}, "LANL_subtype": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A269-", "A353G", "G425A", "A513T", "G542T", "A576C", "C577T", "A579C", "T636G", "G654A", "A656G", "T662G", "G803A", "T992G", "C1060A", "A1445T", "A1452G", "G1489C", "A1492C", "A1495G", "G1498A", "C1511T", "C1540A", "C1541A", "C1615G", "G1626A", "C1627G", "G1640A", "G1643A", "C1656A", "T1682C", "G1687A", "G1778A", "T1791A", "C1828T", 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"INT": ["R14K", "S17N", "Q95S", "L101I"], "RT-p51": ["H208P", "L210M", "N211E", "T215S", "K223-"], "RT-p66": ["H208P", "L210M", "N211E", "T215S", "K223-", "R448K"], "gp120": ["D21E", "T22N", "A45G", "I56M", "N64Y", "N66D", "-105D", "N108-", "K127R", "K140R", "K141Q", "Q142K", "V144I", "N160S", "A196V", "K212R", "S236N", "E240D", "H280Q", "H324Y", "N327-", "K329R", "T330S", "M345T", "T359I", "N365T", "-368I", "-369N", "-370G", "-374T", "-375E", "-376G", "-377C", "-378N", "-380N", "-381T", "-382L", "S412R", "N416K", "-432I", "N435K", "K436T", "D449C"], "gp41": ["E109D", "E110D", "N113G", "S192T", "I210T", "I266V", "V271A", "R277Q", "T307I", "A310T", "A322T"], "nef": ["G3C", "S9-", "I10-", "V11-", "G12-", "A32P", "F81Y", "D98E", "E174D", "E177K", "R178G", "R192K"], "p1": ["H9N"], "p17": ["I60L", "K69N", "T81L", "I82L", "L101V", "V107M", "N109K"], "p2": ["-12G"], "p24": ["H87Q", "T110N"], "p6": ["S3N", "S38T"], "p7": ["G8A", "Q9P", "K10R", "R11K", "A25E", "T50S", "A54S"], "pro": ["F99L"], "rev": ["Y23N", "S31P", "I55L", "D84G", "T114A"], "tat": ["P68L", "I69K", "S75P"], "vif": ["R67K", "D113N", "K160T", "H183Y", "N186T"], "vpr": ["P10L", "E13N", "H45Y", "I63T"], "vpu": ["T2N", "P3L", "I30A", "K31R", "K35Q"]}, "labels": {"aa": "INT: R14K, S17N, Q95S, L101I; RT-p51: H208P, L210M, N211E, T215S, K223-; RT-p66: H208P, L210M, N211E, T215S, K223-, R448K; gp120: D21E, T22N, A45G, I56M, N64Y, N66D, -105D, N108-, K127R, K140R, K141Q, Q142K, V144I, N160S, A196V, K212R, S236N, E240D, H280Q, H324Y, N327-, K329R, T330S, M345T, T359I, N365T, -368I, -369N, -370G, -374T, -375E, -376G, -377C, -378N, -380N, -381T, -382L, S412R, N416K, -432I, N435K, K436T, D449C; gp41: E109D, E110D, N113G, S192T, I210T, I266V, V271A, R277Q, T307I, A310T, A322T; nef: G3C, S9-, I10-, V11-, G12-, A32P, F81Y, D98E, E174D, E177K, R178G, R192K; p1: H9N; p17: I60L, K69N, T81L, I82L, L101V, V107M, N109K; p2: -12G; p24: H87Q, T110N; p6: S3N, S38T; p7: G8A, Q9P, K10R, R11K, A25E, T50S, A54S; pro: F99L; rev: Y23N, S31P, I55L, D84G, T114A; tat: P68L, I69K, S75P; vif: R67K, D113N, K160T, H183Y, N186T; vpr: P10L, E13N, H45Y, I63T; vpu: T2N, P3L, I30A, K31R, K35Q"}}}, {"name": "DQ366660", "node_attrs": {"div": 0.14472999999999997, "accession": "DQ366660", "clade_membership": {"value": "CRF33_01B"}, "country": {"value": "MY"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05MYKL015_2"}, "LANL_subtype": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A286G", "T426A", "C471G", "T525A", "T531C", "A562C", "A569G", "A579G", "G614T", "G639A", "A881G", "A1253G", "C1299T", "C1478T", "G1619A", "A1670G", "C1676T", "A1781G", "C1828A", "A1857G", "G1903A", "T2104C", "G2111A", "C2596T", "C2605T", "G2686A", "A2698G", "T2854C", "A2918C", "A3364G", "G3439A", "G3448A", "A3451G", "A3697C", "A3724G", "T3857C", "C3977T", "A3985G", "A4125G", "T4234C", "T4655C", "A4726G", "T4799G", "C4890A", "A4976C", "T4985C", "A4988C", "A5142C", "A5148G", "C5215A", "A5366G", "G5370A", "C5372A", "G5385A", "T5510C", "C5559T", "A5581C", "C5651T", "G5717A", "G5729A", "A5946G", "T6034C", "A6158G", "-6170T", "-6171T", "-6172G", "-6174C", "-6175C", "T6181A", "C6183G", "A6188-", "C6189-", "T6193A", "A6200G", "A6201T", "-6203C", "-6205T", "A6206G", "T6213G", "G6218A", "A6219T", "-6226T", "A6229C", "G6234A", "A6282G", "G6333A", "A6448G", "A6471G", "G6605A", "A6614G", "C6618T", "-6689G", "-6693A", "G6764A", "G6766C", "A6812G", "T6827G", "-6833A", "-6834A", "-6835T", "A6840C", "G6841A", "G6848A", "A6963G", "-6964A", "-6965A", "-6966A", "-6967A", "-6968T", "-6970G", "-6990C", "-6993C", "-6994A", "-6995G", "-6996A", "-6997A", "-6998G", "-6999G", "-7000G", "-7001T", "-7002G", "-7004A", "C7006T", "C7008A", "A7155C", "T7156A", "T7162-", "A7163-", "A7164-", "A7210G", "G7269A", "A7275G", "A7721G", "G7831A", "A7957T", "A7977G", "G8030T", "A8032G", "T8035G", "G8105A", "T8176C", "T8200C", "-8367A", "-8375A", "G8404A", "A8408C", "A8455G", "C8519T", "G8588A", "A8652G", "G8666A", "C8669T", "T8703C", "A8797T", "A8827G", "A8863G", "A8917G"], "INT": ["N117S"], "RT-p51": ["E6K", "K275Q"], "RT-p66": ["E6K", "K275Q"], "gp120": ["K31R", "N102D", "-109A", "-110N", "-111L", "-112T", "-113N", "-114V", "-115S", "-116N", "-123K", "-124G", "E125N", "K143R", "D157E", "N206S", "D251N", "K254E", "T255I", "E304N", "K320E", "F325V", "K329T", "E332K", "N433S", "N435T", "R472K", "K474R"], "gp41": ["N140D", "M176I", "R218S", "E225G", "A243S", "A268T"], "nef": ["R21K", "Q22H", "D38G", "S55C", "K104E", "F121L", "E152V", "N162S", "E174G"], "p17": ["L31M", "L46V", "L64I", "S66P", "K76T", "I82V", "E93D", "D102N"], "p2": ["-10T", "A11G"], "p6": ["L50*"], "pro": ["K20R"], "rev": ["A15V", "T37S", "S61I", "T62A", "C63G", "S86N"], "tat": ["I45T", "I69L", "T77I", "D83V"], "vif": ["Q47R", "L102I", "R130S", "E134D", "N186H", "T188A"], "vpr": ["E13A", "H15R", "G89R", "G94S"], "vpu": ["A15V", "R37K", "R41K"]}, "labels": {"aa": "INT: N117S; RT-p51: E6K, K275Q; RT-p66: E6K, K275Q; gp120: K31R, N102D, -109A, -110N, -111L, -112T, -113N, -114V, -115S, -116N, -123K, -124G, E125N, K143R, D157E, N206S, D251N, K254E, T255I, E304N, K320E, F325V, K329T, E332K, N433S, N435T, R472K, K474R; gp41: N140D, M176I, R218S, E225G, A243S, A268T; nef: R21K, Q22H, D38G, S55C, K104E, F121L, E152V, N162S, E174G; p17: L31M, L46V, L64I, S66P, K76T, I82V, E93D, D102N; p2: -10T, A11G; p6: L50*; pro: K20R; rev: A15V, T37S, S61I, T62A, C63G, S86N; tat: I45T, I69L, T77I, D83V; vif: Q47R, L102I, R130S, E134D, N186H, T188A; vpr: E13A, H15R, G89R, G94S; vpu: A15V, R37K, R41K"}}}]}]}, {"name": "CRF33_01B_NODE_0000003", "node_attrs": {"div": 0.11690999999999997, "clade_membership": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G3937A", "T3962G", "T4776A", "C4914A", "G5448T", "-6170T", "-6171T", "-6174C", "-6175C", "G6195A", "T6213C", "A6339G", "-6987A", "-6993C", "T7162G", "A7372C", "A7532C", "C7732A", "A8922G", "G8983A"], "INT": ["L63V"], "RT-p51": ["V35I"], "RT-p66": ["V35I"], "gp120": ["-110T"], "gp41": ["M54L", "K77Q", "D143E"], "nef": ["I194V"]}, "labels": {"aa": "INT: L63V; RT-p51: V35I; RT-p66: V35I; gp120: -110T; gp41: M54L, K77Q, D143E; nef: I194V"}}, "children": [{"name": "DQ366659", "node_attrs": {"div": 0.14419999999999997, "accession": "DQ366659", "clade_membership": {"value": "CRF33_01B"}, "country": {"value": "MY"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05MYKL007_1"}, "LANL_subtype": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G206A", "G256A", "G428A", "T435A", "G455A", "A458G", "A461C", "A513C", "G530A", "T531C", "G615A", "T636A", "G647A", "C655T", "A661C", "A665G", "C679A", "G709A", "C771T", "A860G", "C897T", "C968T", "G976A", "C1060A", "G1090A", "T1175C", "A1253G", "T1262A", "C1280T", "A1289G", "G1313A", "A1451C", "T1457A", "G1664A", "A1670G", "T1752G", "C1753T", "T1791G", "G1794A", "A1897G", "G1903T", "A1963G", "A2007G", "T2245C", "A2297G", "C2386T", "A2404G", "A2419G", "T2449C", "A2462G", "G2463A", "A2566G", "G2578A", "A2629G", "T2632C", "C2694T", "C2708T", "A2710G", "A2808G", "G2920A", "G2926A", "G2946A", "C3055T", "G3127A", "A3165G", "G3211A", "A3229G", "T3287C", "G3477A", "T3505A", "A3601T", "G3715A", "C3734A", "G3787A", "A3802G", "A3838G", "T3885C", "A3960G", "C4065T", "C4076T", "T4085C", "A4093G", "A4150G", "C4201T", "T4234C", "A4397C", "A4420G", "A4555G", "A4611G", "G4622A", "T4672A", "A4695G", "A4696G", "G4697A", "T4703G", "G4727A", "C4761A", "T4780C", "A4826T", "G4861A", "A4951G", "C4977T", "G4978A", "G4982A", "C5041T", "A5148G", "T5152C", "A5159G", "C5214A", "C5215A", "A5233T", "A5246C", "A5284G", "T5292C", "C5384T", "C5425A", "A5462G", "C5482T", "G5556A", "A5581C", "T5609A", "T5648C", "T5660C", "T5697G", "T5731C", "A5790G", "G5845A", "T5851G", "T5917C", "T5953C", "G6029A", "G6035A", "A6131C", "C6153T", "T6155C", "A6158C", "-6172G", "-6187A", "A6194G", "A6195C", "A6197C", "A6198C", "-6207T", "A6209C", "C6213A", "A6219T", "G6220A", "-6226G", "A6235C", "T6252C", "C6317T", "T6322A", "A6324G", "T6331G", "T6364C", "A6394G", "T6487C", "A6583G", "C6607T", "G6611A", "C6618A", "C6661A", "A6675G", "C6678T", "A6691G", "C6692A", "A6715C", "A6734G", "T6735A", "A6736C", "A6752C", "A6754G", "A6767G", "A6778G", "A6805G", "G6806T", "-6833A", "-6834A", "-6835A", "A6855G", "A6856G", "T6863C", "T6888G", "A6932G", "C6933A", "A6963G", "-6964G", "-6965A", "-6966A", "-6967A", "-6968T", "-6969G", "-6970A", "-6971A", "-6972A", "-6973C", "-6974C", "-6975A", "-6976T", "-6977G", "-6978G", "-6979A", "-6980G", "-6981G", "-6982G", "-6983T", "-6984G", "-6985T", "-6986A", "-6988T", "-6989A", "-6990A", "-6991C", "-6994T", "T7003-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "T7018C", "T7059C", "G7089A", "T7090G", "A7095T", "G7132A", "A7148G", "A7149C", "A7164C", "A7186G", "A7219G", "G7295C", "C7320T", "G7517C", "G7534A", "T7575C", "G7589A", "C7603T", "G7677A", "A7689G", "A7698T", "G7702T", "A7703T", "C7710T", "G7720A", "A7765G", "G7769A", "A7782G", "A7791G", "G7807A", "A7818G", "G7831A", "C7959T", "A7992G", "C8005T", "A8011C", "G8019C", "A8032G", "G8070T", "C8080A", "C8093A", "A8128C", "C8129A", "A8130G", "C8131A", "A8132C", "G8133A", "T8164C", "T8182A", "A8184T", "T8221C", "C8320T", "A8348G", "G8354A", "-8367A", "C8385A", "A8425G", "G8506C", "G8588A", "G8590C", "T8675C", "T8711C", "C8717A", "T8740C", "A8746T", "A8809C", "G8818A", "C8825T", "G8864T", "A8873C", "T8904G", "G8945A", "C9068T", "T9074C"], "INT": ["V37A", "Q62R", "T97I", "I208L", "D279G", "G283S"], "RT-p51": ["S68G", "S123D", "T200I", "K238R", "R284K", "K357R", "W398R"], "RT-p66": ["S68G", "S123D", "T200I", "R284K", "K357R", "W398R", "R461K", "Q547K"], "gp120": ["E59K", "V61I", "K93Q", "T100I", "N102H", "-105N", "-106L", "-107E", "-109V", "-111E", "V126I", "K127S", "M133T", "P155S", "D157G", "N158G", "N160K", "N161S", "S162N", "I243M", "A253T", "T255N", "N274S", "T275I", "I279M", "Q287H", "K300Q", "E309K", "A318S", "-326K", "Q334R", "S337P", "M345R", "T360E", "-376G", "-377C", "-378N", "-379N", "-380T", "T385-", "V402A", "S412K", "K414I", "N432A", "N437T", "E481Q"], "gp41": ["A6V", "V72L", "I91T", "A96T", "K106R", "S125N", "N129S", "Y132F", "E133D", "I134L", "T136I", "A156T", "N160S", "D163S", "K172R", "M176I", "P219L", "D230G", "S239T", "S256I", "L264I", "R277Q", "Q294L"], "nef": ["Q15K", "E28G", "G83A", "I133T", "Y135F", "D156A", "G159E", "E174D", "E177D", "S188A", "R192K"], "p17": ["L34I", "E42D", "I60L", "S66P", "V94I", "L101I", "N109T", "T115K", "S125N"], "p2": ["A7H", "Q8T", "Q9G", "A11-"], "p24": ["P14S", "R82K", "T110N", "S120N"], "p6": ["S25V", "S38V", "A39T"], "pro": ["E35D", "K70R"], "rev": ["R14K", "R53C", "I55L", "E57D", "T62A", "Q74H", "L78I", "T82N", "T94Q", "Q95G", "S106P", "S112T"], "tat": ["P3L", "Q17K", "K24N", "K29R", "I69L", "P84S"], "vif": ["I9V", "M29K", "K37G", "F39L", "L59I", "V65A", "Q80H", "R92K", "N93K", "K122R", "R131Y", "A152V", "T188A", "M189T"], "vpr": ["H15R", "T19A", "P37Q", "N48H", "I60M", "I63T"], "vpu": ["M1K", "V14A", "L18S", "F30L", "D80N", "L82V"]}, "labels": {"aa": "INT: V37A, Q62R, T97I, I208L, D279G, G283S; RT-p51: S68G, S123D, T200I, K238R, R284K, K357R, W398R; RT-p66: S68G, S123D, T200I, R284K, K357R, W398R, R461K, Q547K; gp120: E59K, V61I, K93Q, T100I, N102H, -105N, -106L, -107E, -109V, -111E, V126I, K127S, M133T, P155S, D157G, N158G, N160K, N161S, S162N, I243M, A253T, T255N, N274S, T275I, I279M, Q287H, K300Q, E309K, A318S, -326K, Q334R, S337P, M345R, T360E, -376G, -377C, -378N, -379N, -380T, T385-, V402A, S412K, K414I, N432A, N437T, E481Q; gp41: A6V, V72L, I91T, A96T, K106R, S125N, N129S, Y132F, E133D, I134L, T136I, A156T, N160S, D163S, K172R, M176I, P219L, D230G, S239T, S256I, L264I, R277Q, Q294L; nef: Q15K, E28G, G83A, I133T, Y135F, D156A, G159E, E174D, E177D, S188A, R192K; p17: L34I, E42D, I60L, S66P, V94I, L101I, N109T, T115K, S125N; p2: A7H, Q8T, Q9G, A11-; p24: P14S, R82K, T110N, S120N; p6: S25V, S38V, A39T; pro: E35D, K70R; rev: R14K, R53C, I55L, E57D, T62A, Q74H, L78I, T82N, T94Q, Q95G, S106P, S112T; tat: P3L, Q17K, K24N, K29R, I69L, P84S; vif: I9V, M29K, K37G, F39L, L59I, V65A, Q80H, R92K, N93K, K122R, R131Y, A152V, T188A, M189T; vpr: H15R, T19A, P37Q, N48H, I60M, I63T; vpu: M1K, V14A, L18S, F30L, D80N, L82V"}}}, {"name": "CRF33_01B_NODE_0000004", "node_attrs": {"div": 0.12041999999999997, "clade_membership": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G1127A", "T1792C", "A1835G", "G3538T", "G3772A", "A4782G", "G5131A", "G5226A", "G5276C", "T5412G", "C5707A", "G5734A", "C5756A", "C6183A", "-6187C", "G6201C", "G6234A", "C6499T", "C6631T", "G6764A", "G6821A", "-6957T", "-6964T", "-6995G", "-6996A", "-6999G", "-7001A", "A7322T", "G7620A", "G7658C", "A7977G", "G8239A", "G8508A", "T8509C", "T8585C", "T8835C"], "gp120": ["-112T", "E304K", "V305I", "E323K", "N365K", "-369N", "-381E"], "gp41": ["M7L", "E119Q", "N166K", "E225G"], "nef": ["V56T", "Q125H"], "p17": ["V107A"], "pro": ["I13V", "M89L"], "tat": ["N12K"], "vif": ["I66V", "G182D"], "vpr": ["G41D", "E58Q"], "vpu": ["L34R", "V43I", "A50E"]}, "labels": {"aa": "gp120: -112T, E304K, V305I, E323K, N365K, -369N, -381E; gp41: M7L, E119Q, N166K, E225G; nef: V56T, Q125H; p17: V107A; pro: I13V, M89L; tat: N12K; vif: I66V, G182D; vpr: G41D, E58Q; vpu: L34R, V43I, A50E"}}, "children": [{"name": "DQ366662", "node_attrs": {"div": 0.15010999999999997, "accession": "DQ366662", "clade_membership": {"value": "CRF33_01B"}, "country": {"value": "MY"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05MYKL045_1"}, "LANL_subtype": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A303T", "T396C", "A440G", "A513C", "A605G", "G614T", "A645C", "A666G", "G667C", "T668A", "A725G", "C771T", "G791A", "G803A", "A806G", "G866A", "A899G", "A905G", "A1025G", "C1060A", "G1078C", "A1241G", "C1280T", "A1452G", "A1475G", "G1553A", "A1587C", "T1616C", "C1676T", "A1685G", "A1714C", "A1736G", "A1743G", "T1787C", "G1903A", "A1927G", "A1951G", "A1963G", "T1986C", "A2063T", "C2281T", "G2293A", "C2353T", "G2473A", "T2499G", "T2536C", "A2551G", "A2629G", "A2710G", "A2727G", "A2734G", "G2755A", "C2776T", "C2885T", "A2919G", "G2951A", "A2969G", "G2984A", "C3030A", "A3142G", "A3164C", "A3199G", "A3277G", "T3412C", "G3477A", "C3541T", "A3643G", "G3644T", "C3691T", "T3755G", "G3787A", "T3799C", "A3824G", "T3857C", "T3904C", "A3961G", "C4014T", "G4063T", "G4078C", "G4092C", "G4145C", "C4146A", "T4147G", "A4155G", "C4200T", "A4650C", "A4651G", "A4658G", "G4673A", "T4674C", "T4701G", "C4728A", "A4735G", "A4863C", "A5037C", "G5087A", "G5114A", "G5123A", "T5281C", "C5384T", "G5427A", "G5437C", "A5462T", "T5515C", "G5535A", "C5551T", "G5556A", "A5557C", "A5560G", "G5565A", "G5668A", "G5675A", "C5687T", "T5708A", "G5730T", "G5739A", "G5775A", "A5784G", "C5789T", "A5790G", "G5791-", "A5792-", "T5793-", "A5796T", "T5797G", "T5798A", "G5799T", "G5800T", "C5801T", "C5802G", "A5803G", "A5804C", "A5805C", "C5806A", "T5807A", "T5808G", "-5809C", "-5810T", "-5811T", "G5824A", "A5864G", "C5866A", "G5907A", "T5917G", "G5956A", "G5972A", "C6023A", "C6025A", "A6073G", "T6091C", "G6092A", "A6119C", "C6141A", "C6145A", "-6172G", "C6190A", "A6192C", "T6193C", "C6196T", "T6199C", "A6200T", "C6202T", "-6203A", "-6204G", "-6205C", "-6207A", "G6212A", "A6215T", "T6217G", "C6222T", "G6224T", "A6225G", "-6226A", "G6227A", "A6229G", "A6251G", "A6275C", "C6286A", "C6318A", "A6349G", "A6425G", "A6464G", "G6503A", "T6531C", "C6563T", "A6594C", "G6611A", "C6629A", "A6639C", "T6641C", "C6670T", "A6671G", "C6673A", "T6676G", "A6677-", "C6678-", "A6679-", "A6680-", "G6681-", "A6682-", "C6684A", "T6688A", "A6691G", "C6693G", "-6697G", "-6698A", "-6699C", "-6700T", "-6701A", "-6702C", "A6703G", "A6715C", "G6726A", "G6732A", "T6738C", "A6779G", "G6791A", "T6792C", "A6797G", "G6802A", "A6811C", "-6830G", "-6834A", "-6835G", "C6861A", "A6932T", "T6949A", "A6950-", "C6951-", "T6952-", "T6953C", "G6954T", "C6955G", "-6956T", "-6958T", "-6959A", "-6965A", "-6966C", "-6967T", "-6968C", "-6969A", "-6970C", "-6971A", "-6972G", "-6973A", "-6983G", "-6984A", "-6985A", "-6986A", "-6988T", "-6989G", "-6990A", "-6991A", "-6994C", "-6997G", "-6998G", "-7000A", "-7002A", "-7004G", "G7026A", "G7055A", "G7058A", "T7059C", "C7087T", "A7088G", "G7089A", "T7090G", "C7127T", "A7148G", "A7149G", "A7152T", "A7157G", "G7162A", "A7196G", "A7294G", "G7391A", "T7411G", "G7589A", "C7590A", "A7621G", "A7630T", "G7631T", "G7633T", "C7642A", "A7688G", "G7712A", "A7721G", "A7790G", "A7800G", "T7801A", "C7926T", "A7948T", "G8006A", "T8007C", "C8009A", "C8037T", "G8107A", "G8127A", "A8130G", "T8203C", "C8223T", "G8231A", "A8273G", "G8274C", "C8294A", "C8296T", "C8311T", "-8367T", "A8370G", "T8371C", "A8372G", "T8374G", "C8451T", "T8504C", "G8506C", "A8531G", "A8558G", "T8584A", "A8653G", "A8658G", "T8675C", "T8701A", "T8708C", "C8747T", "A8798T", "C8810G", "G8834A", "T8903C", "A8917G", "T8935A", "T8939C", "C9129A", "A9135G", "G9137A"], "INT": ["S17G", "A80V", "E96D", "G106A", "A124Q", "K127R", "P142L"], "RT-p51": ["I135R", "N211S", "K275R", "A286T", "I292V", "E297K", "T312N", "K357Q"], "RT-p66": ["I135R", "N211S", "R238K", "K275R", "A286T", "I292V", "E297K", "T312N", "K357Q", "R461K", "V517L", "S554A"], "gp120": ["N4E", "R18K", "D21E", "V40I", "H57K", "V80I", "K89Q", "P96H", "-105S", "-106A", "-109L", "-111N", "-113N", "-114N", "-115S", "-116S", "-117K", "M133V", "K141Q", "P155Q", "N160S", "T191A", "N204D", "V217I", "V226A", "E247A", "A253T", "H259N", "K262T", "S263P", "N273E", "N274K", "T275-", "R276-", "T277K", "S278R", "I279M", "T280R", "I281M", "-282T", "-283T", "Q287H", "R291K", "G293N", "D294E", "V313T", "K315E", "E319D", "-326E", "P336H", "T360S", "T366L", "C367F", "-368N", "T371-", "-374T", "-375H", "-376R", "-377E", "-378N", "-379E", "-380T", "-382G", "-383K", "-384D", "R391K", "G401R", "V402T", "S412E", "N432G", "N433I", "N435D", "K448E"], "gp41": ["A30T", "A96N", "E109D", "E110Y", "N113K", "N129D", "E137K", "N140D", "K166R", "T208I", "E215D", "V235T", "A245V", "G275E", "T307I", "A310T", "R324A", "H331N"], "nef": ["S9C", "I10A", "V11G", "F81Y", "K104R", "R106G", "F120Y", "E152D", "D156E", "L198Q"], "p17": ["I60L", "E93D", "I104L", "S111A"], "p2": ["Q6H", "-12G"], "p24": ["P14S", "I58M", "T110N", "G116A"], "p6": ["E12A", "T22A"], "p7": ["K41Q"], "pro": ["L63P"], "rev": ["S7N", "R14N", "R17K", "T34S", "R53H", "A54E", "E87K"], "tat": ["P3L", "A21P", "K24N", "K29I", "Y47H", "P59S", "S61R", "S62G", "P73S", "N80I"], "vif": ["N22R", "M29I", "Y30H", "F39V", "H48N", "K50R", "N93Q", "K151Q"], "vpr": ["A4T", "D7N"], "vpu": ["V21I", "W23*", "A27V", "R34K", "R41S", "T61M", "E63D", "D73N"]}, "labels": {"aa": "INT: S17G, A80V, E96D, G106A, A124Q, K127R, P142L; RT-p51: I135R, N211S, K275R, A286T, I292V, E297K, T312N, K357Q; RT-p66: I135R, N211S, R238K, K275R, A286T, I292V, E297K, T312N, K357Q, R461K, V517L, S554A; gp120: N4E, R18K, D21E, V40I, H57K, V80I, K89Q, P96H, -105S, -106A, -109L, -111N, -113N, -114N, -115S, -116S, -117K, M133V, K141Q, P155Q, N160S, T191A, N204D, V217I, V226A, E247A, A253T, H259N, K262T, S263P, N273E, N274K, T275-, R276-, T277K, S278R, I279M, T280R, I281M, -282T, -283T, Q287H, R291K, G293N, D294E, V313T, K315E, E319D, -326E, P336H, T360S, T366L, C367F, -368N, T371-, -374T, -375H, -376R, -377E, -378N, -379E, -380T, -382G, -383K, -384D, R391K, G401R, V402T, S412E, N432G, N433I, N435D, K448E; gp41: A30T, A96N, E109D, E110Y, N113K, N129D, E137K, N140D, K166R, T208I, E215D, V235T, A245V, G275E, T307I, A310T, R324A, H331N; nef: S9C, I10A, V11G, F81Y, K104R, R106G, F120Y, E152D, D156E, L198Q; p17: I60L, E93D, I104L, S111A; p2: Q6H, -12G; p24: P14S, I58M, T110N, G116A; p6: E12A, T22A; p7: K41Q; pro: L63P; rev: S7N, R14N, R17K, T34S, R53H, A54E, E87K; tat: P3L, A21P, K24N, K29I, Y47H, P59S, S61R, S62G, P73S, N80I; vif: N22R, M29I, Y30H, F39V, H48N, K50R, N93Q, K151Q; vpr: A4T, D7N; vpu: V21I, W23*, A27V, R34K, R41S, T61M, E63D, D73N"}}}, {"name": "DQ366661", "node_attrs": {"div": 0.15110999999999997, "accession": "DQ366661", "clade_membership": {"value": "CRF33_01B"}, "country": {"value": "MY"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05MYKL031_1"}, "LANL_subtype": {"value": "CRF33_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G202T", "T213C", "T214G", "T217A", "-304T", "G317A", "G354A", "G407A", "A419G", "T422C", "G428A", "C467T", "C482T", "C535A", "A562G", "A578G", "T580C", "C583T", "A599G", "C623T", "T641A", "T662G", "A664G", "A692G", "C707T", "A715C", "A725T", "T774G", "A776G", "T789C", "A797C", "A815G", "A839G", "C917T", "A944C", "A978G", "C979T", "C1118T", "A1176G", "G1192A", "C1220T", "G1232A", "T1262C", "A1277G", "A1301G", "C1331A", "T1422C", "T1481C", "G1586A", "A1660G", "G1661C", "C1689A", "T1748C", "A1751C", "C1767T", "C1798A", "T1888C", "A1918G", "A1988G", "A2002G", "A2063C", "G2134A", "A2221G", "T2245A", "G2387T", "A2461G", "T2474C", "A2592G", "C2605T", "T2635C", "C2728A", "C2749T", "A2773C", "A2808G", "C2831T", "C2845T", "G2909C", "C2968A", "G2972A", "A3001G", "C3034A", "A3238C", "T3303C", "A3361G", "T3424C", "T3433C", "G3463A", "G3473A", "A3482G", "A3487G", "G3508A", "C3542T", "A3565G", "T3577C", "C3589T", "C3652T", "A3682C", "A3727C", "G3796A", "T4075C", "A4182G", "A4185G", "T4234C", "T4291G", "A4384G", "A4677G", "C4724T", "G4769T", "G4856A", "A4865T", "A4966G", "A4967G", "G4978A", "T4995G", "A5005G", "C5006T", "A5026T", "A5061G", "G5082A", "T5083C", "A5112G", "T5162C", "T5197G", "C5213A", "C5214A", "A5233G", "T5245C", "A5431T", "C5438A", "T5439A", "T5448A", "C5454T", "G5563A", "G5610A", "A5611T", "G5620C", "T5696G", "A5699T", "G5700T", "T5708G", "C5727T", "T5827G", "T5870C", "G5963A", "T5964A", "A6022G", "A6030T", "A6044T", "A6053G", "A6066C", "A6158G", "-6172C", "A6186T", "C6190G", "A6194G", "C6196A", "A6197T", "A6198T", "T6199G", "A6206-", "A6211G", "G6212T", "A6215C", "A6216T", "T6217A", "G6218T", "A6221G", "C6222A", "-6226T", "A6230G", "T6241C", "A6253G", "C6263A", "G6267A", "G6283A", "G6284A", "T6285C", "A6311G", "T6322A", "T6325G", "A6326G", "A6329G", "T6331G", "G6333A", "T6334G", "T6337C", "T6340G", "T6347C", "A6362T", "A6443C", "C6477T", "C6482T", "C6483T", "A6490T", "G6533A", "T6562C", "A6574T", "G6605A", "A6640G", "A6753G", "A6781G", "A6788C", "G6809A", "A6818G", "T6846C", "T6849A", "G6910A", "A6935G", "A6937C", "T6949G", "-6956A", "-6958A", "-6959G", "T6961A", "-6986G", "-6988A", "-6989A", "-6990C", "-6991C", "C6993T", "-6994G", "-6997A", "-6998T", "-7000T", "-7002G", "-7004A", "C7006A", "A7046T", "A7094G", "A7095T", "A7149T", "A7152C", "A7161G", "A7164C", "C7170T", "C7174T", "G7212A", "G7276A", "G7319A", "G7366A", "C7372T", "A7373G", "G7508A", "G7534A", "T7544G", "A7574G", "C7603T", "A7640G", "C7642T", "G7702T", "A7732G", "G7750A", "A7753G", "T7774C", "A7791G", "A7796T", "T7801G", "G8002A", "A8011C", "T8097C", "C8103T", "A8152G", "A8204G", "C8213T", "A8216G", "T8221C", "A8263G", "C8268T", "G8349A", "G8350A", "T8366C", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "G8376-", "G8377-", "A8378-", "A8407G", "T8414A", "A8455C", "A8461G", "T8505A", "A8536G", "C8543A", "C8640T", "A8657G", "A8660G", "C8669T", "C8684T", "A8688C", "A8739G", "C8768T", "A8827G", "A8859C", "T8860A", "C8921T", "G8922C", "C8927T", "A8933G", "A8966G", "A8969G", "G8971C", "C9039T", "T9073C", "T9097G", "G9132A"], "INT": ["Q136R", "Q137R", "I203M"], "RT-p51": ["A98S", "Y127H", "K166R", "M178I", "N211K", "K238R", "A272P", "D291E", "V293I", "M403T"], "RT-p66": ["A98S", "Y127H", "K166R", "M178I", "N211K", "A272P", "D291E", "V293I", "M403T", "D460N", "R463G", "H483Y", "E529D"], "gp120": ["V37K", "I56M", "E59V", "N64Y", "M67V", "K71T", "N102D", "-111L", "-113D", "L137I", "R138K", "V144T", "I153V", "D157T", "N158E", "N159D", "N160E", "N161K", "S162K", "T170S", "I197L", "T208I", "P210L", "K212N", "V227I", "E240D", "D251N", "T280P", "K300R", "E309K", "K312Q", "E319K", "K322E", "N327-", "-328N", "I331T", "V332D", "K361D", "-368I", "-370E", "-372M", "-382C", "-383S", "-384K", "M398L", "K414V", "N432I", "N433K", "E436G", "N437T", "T439I", "S453N"], "gp41": ["A6T", "I24V", "V69I", "F81V", "I91V", "N113D", "E133D", "D163S", "T165S", "L265S", "A267V", "I301V", "L304F", "N305D", "A322V"], "nef": ["G3N", "S9-", "I10-", "V11-", "G12-", "Q22R", "D38A", "H40R", "N116H", "I133V", "N162S", "I173Q", "R192K", "V194L"], "p1": ["K10S"], "p17": ["V7I", "T67N", "K76R", "I82T", "A83V", "D102E", "I104M", "N109K", "K110R", "K127T", "Q130H"], "p2": ["A7Q", "Q8T", "Q9G", "A11-"], "p24": ["L15V", "E71D", "T83V", "S149G", "R154K"], "p6": ["P30S", "S40Y"], "pro": ["I64V"], "rev": ["V52I", "I55L", "I102V"], "tat": ["T19S", "A21E", "E63K", "P81Q"], "vif": ["I31V", "E61D", "Q127R", "R131H", "S137A", "N140S", "Y147F", "I159V", "V166T", "K176E"], "vpr": ["Q3R", "P37N"], "vpu": ["M1I", "T2S", "E5Q", "F30C", "Q31L", "F74V"]}, "labels": {"aa": "INT: Q136R, Q137R, I203M; RT-p51: A98S, Y127H, K166R, M178I, N211K, K238R, A272P, D291E, V293I, M403T; RT-p66: A98S, Y127H, K166R, M178I, N211K, A272P, D291E, V293I, M403T, D460N, R463G, H483Y, E529D; gp120: V37K, I56M, E59V, N64Y, M67V, K71T, N102D, -111L, -113D, L137I, R138K, V144T, I153V, D157T, N158E, N159D, N160E, N161K, S162K, T170S, I197L, T208I, P210L, K212N, V227I, E240D, D251N, T280P, K300R, E309K, K312Q, E319K, K322E, N327-, -328N, I331T, V332D, K361D, -368I, -370E, -372M, -382C, -383S, -384K, M398L, K414V, N432I, N433K, E436G, N437T, T439I, S453N; gp41: A6T, I24V, V69I, F81V, I91V, N113D, E133D, D163S, T165S, L265S, A267V, I301V, L304F, N305D, A322V; nef: G3N, S9-, I10-, V11-, G12-, Q22R, D38A, H40R, N116H, I133V, N162S, I173Q, R192K, V194L; p1: K10S; p17: V7I, T67N, K76R, I82T, A83V, D102E, I104M, N109K, K110R, K127T, Q130H; p2: A7Q, Q8T, Q9G, A11-; p24: L15V, E71D, T83V, S149G, R154K; p6: P30S, S40Y; pro: I64V; rev: V52I, I55L, I102V; tat: T19S, A21E, E63K, P81Q; vif: I31V, E61D, Q127R, R131H, S137A, N140S, Y147F, I159V, V166T, K176E; vpr: Q3R, P37N; vpu: M1I, T2S, E5Q, F30C, Q31L, F74V"}}}]}]}]}]}]}]}]}, {"name": "NODE_0000689", "node_attrs": {"div": 0.09856, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T851C", "G1455A", "G1664A", "C1676T", "C1679T", "G1858A", "A1963G", "C2098A", "T2199C", "C2211A", "A2215G", "A2222G", "T2299C", "A2380G", "G3279A", "G6234A", "A6336G", "A7195G", "A8794G"], "RT-p51": ["V35T", "T39K", "K43E", "M178I", "R395K"], "RT-p66": ["V35T", "T39K", "K43E", "M178I", "R395K"], "gp120": ["I447M"], "gp41": ["N113D", "D230G"], "nef": ["K151R", "S188A"], "p6": ["Y36P"], "tat": ["S75P"]}, "labels": {"aa": "RT-p51: V35T, T39K, K43E, M178I, R395K; RT-p66: V35T, T39K, K43E, M178I, R395K; gp120: I447M; gp41: N113D, D230G; nef: K151R, S188A; p6: Y36P; tat: S75P"}}, "children": [{"name": "results/subtype_trees/CRF78_cpx.nwk", "node_attrs": {"div": 0.12029, "clade_membership": {"value": "CRF78_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A509G", "T635C", "T655-", "T662A", "C830T", "G920A", "A941G", "T1143C", "A1486G", "G1488A", "G1489A", "A1492C", "G1493A", "A1495G", "G1498A", "A1499G", "T1501C", "-1503G", "-1504T", "-1505C", "C1511T", "C1517T", "A1532G", "C1536A", "A1562G", "T1571C", "G1586A", "T1598C", "C1610T", "T1729-", "G1731-", "G1732-", "G1733-", "G1734-", "A1735T", "A1736C", "A1740G", "C1741A", "A1742G", "-1748C", "C1751A", "T1752G", "G1766A", "A1777G", "C1782-", "T1787-", "T1790C", "G1794A", "A1819G", "A1841G", "A1849C", "C1853A", "A1861G", "A1867C", "T1873C", "T2011C", "A2029G", "A2075C", "T2080A", "T2086A", "T2087C", "T2101C", "T2107C", "G2224A", "A2227G", "T2452A", "A2462G", "G2463A", "G2630A", "T2631C", "A2674G", "C2689T", "A2809G", "C2818A", "G2828C", "A2830G", "A2842G", "C2845T", "A2872G", "C2885T", "T2890C", "A2902G", "T2908C", "G2909C", "G2914A", "G2920A", "A3043G", "A3088G", "G3097A", "C3160A", "A3200G", "T3240C", "T3303C", "G3304A", "T3346C", "G3477A", "C3712T", "C3843T", "A3937G", "C4357T", "T4754C", "T4799G", "A4865C", "C4977A", "A5299G", "G5444A", "C5482A", "G5599A", "A5655G", "A5710C", "C5989T", "-6175C", "T6180C", "T6187G", "C6189A", "G6195A", "-6203A", "-6205A", "A6206G", "-6230A", "T6655C", "G6693A", "G6766A", "A6791G", "A6992-", "-7005A", "C7165T", "A7620G", "C7926T", "T7939G", "A7964G", "G8019A", "A8032G", "A8050G", "C8277T", "G8421A", "A8517G", "A8812C", "G8861A", "G8864T", "T8939C", "G8981A", "C9018T", "A9026G"], "INT": ["A23V"], "RT-p51": ["S123D", "V179T", "E245Q", "A272P", "T369A", "I382T", "M403T"], "RT-p66": ["S123D", "V179T", "E245Q", "A272P", "T369A", "I382T", "M403T", "R461K"], "gp120": ["N108-", "T110-", "T313V", "-384D"], "gp41": ["K106R", "T208I", "H212Q", "R221G", "S239N", "G293V", "A325V"], "nef": ["A27T", "R59E", "N157T", "M173I", "E174D"], "p17": ["V107A", "N109K", "K110R"], "p6": ["G18-", "E19-", "T21E", "P25A", "-26P", "K33R", "L35T", "P36-", "P37-", "N47S"], "p7": ["K7R", "G8N", "Q9P", "K10R", "R11K", "I12T", "-13V", "L24I"], "pro": ["I15V", "L19I", "I93L"], "rev": ["S31A", "K39R", "T62A", "T68A"], "tat": ["S23N", "P73S", "I77S"], "vif": ["R131S"], "vpu": ["K35Q"]}, "labels": {"aa": "INT: A23V; RT-p51: S123D, V179T, E245Q, A272P, T369A, I382T, M403T; RT-p66: S123D, V179T, E245Q, A272P, T369A, I382T, M403T, R461K; gp120: N108-, T110-, T313V, -384D; gp41: K106R, T208I, H212Q, R221G, S239N, G293V, A325V; nef: A27T, R59E, N157T, M173I, E174D; p17: V107A, N109K, K110R; p6: G18-, E19-, T21E, P25A, -26P, K33R, L35T, P36-, P37-, N47S; p7: K7R, G8N, Q9P, K10R, R11K, I12T, -13V, L24I; pro: I15V, L19I, I93L; rev: S31A, K39R, T62A, T68A; tat: S23N, P73S, I77S; vif: R131S; vpu: K35Q", "clade": "CRF78_cpx"}}, "children": [{"name": "KU161145", "node_attrs": {"div": 0.15943, "accession": "KU161145", "clade_membership": {"value": "CRF78_cpx"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "YNTC88"}, "LANL_subtype": {"value": "CRF78_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A412G", "G424A", "C471A", "A503G", "G542A", "A562G", "G607A", "C626T", "-655A", "A656G", "A664G", "A699G", "T773C", "T774A", "A776C", "G810A", "C871G", "A881G", "T902C", "C922G", "G978A", "A1142G", "G1268A", "C1280T", "G1302A", "T1316C", "T1329G", "G1388A", "T1422C", "G1424A", "C1446A", "A1448C", "C1449A", "A1450G", "T1451G", "G1452-", "C1453-", "A1454-", "A1455-", "T1457-", "-1458A", "-1459A", "-1460T", "C1491T", "A1500C", "C1535T", "A1643G", "T1681C", "A1709G", "C1788A", "A1804G", "T1828C", "A1832T", "A1839G", "A1857G", "G1963A", "G1969A", "T2035C", "A2286G", "C2335T", "C2353T", "G2459A", "C2584T", "C2596T", "A2612T", "A2615C", "A2665G", "T2672C", "G2683A", "C2694T", "T2719C", "T2737G", "C2806T", "A2827T", "C2857T", "G2951A", "C3013T", "C3056T", "G3094A", "A3115G", "A3164C", "C3201T", "A3224T", "C3225T", "A3274G", "T3358C", "G3398A", "T3496C", "G3538A", "T3544C", "T3551C", "T3559C", "C3628T", "G3685A", "T3778C", "T3811C", "A3813G", "G3925A", "A3985G", "G3989A", "A4087G", "A4130C", "G4131C", "T4135C", "A4222T", "A4254G", "A4306G", "A4407G", "T4477C", "C4501T", "C4724T", "C4761A", "G4769A", "A4774C", "A4790C", "G4805A", "C4826T", "A4845G", "T4940C", "A4977G", "G4978A", "A4988C", "A4994T", "G5036A", "C5041T", "C5047T", "A5057G", "T5062G", "G5065A", "A5112G", "T5147C", "G5225A", "G5226A", "A5246G", "T5254C", "A5282C", "T5293G", "G5312A", "C5351A", "G5385A", "C5397T", "C5438A", "C5454T", "T5467G", "G5468T", "A5557G", "G5561A", "A5599T", "A5611T", "G5620C", "G5668A", "G5699A", "A5781G", "G5824A", "A5848G", "G5907A", "T5917G", "G5972A", "C6026A", "C6052T", "G6076T", "G6092A", "T6142C", "C6148T", "A6164G", "C6166T", "A6168C", "-6170T", "-6172C", "-6174T", "A6185G", "A6186T", "A6188G", "A6189G", "A6194G", "-6198G", "-6201C", "-6202A", "-6204T", "-6207G", "T6210A", "-6211T", "A6212T", "-6216C", "-6217A", "-6220T", "A6221G", "-6222A", "G6224-", "G6227-", "A6228-", "A6232G", "T6242A", "A6262C", "C6263A", "G6277A", "C6278A", "T6287C", "T6289G", "G6304T", "G6323A", "T6325C", "A6326C", "T6328G", "A6330G", "A6333G", "A6338G", "-6340A", "T6347C", "T6355C", "T6358C", "T6385C", "C6441T", "T6466G", "A6508G", "G6532A", "C6559A", "A6595G", "G6628A", "A6638G", "C6652T", "C6692T", "A6693C", "A6733G", "A6751G", "A6785G", "T6787C", "G6788A", "C6792T", "T6794C", "G6806A", "C6807A", "T6808A", "A6810G", "C6824T", "C6850A", "T6863G", "T6888C", "A6900C", "A6947G", "G6948A", "C6951G", "G6954A", "-6955T", "-6956T", "-6957A", "-6958T", "-6959A", "-6960A", "-6961T", "T7014G", "A7036G", "G7054A", "T7078C", "A7085G", "T7090G", "A7095G", "A7096G", "T7114C", "A7152C", "A7155C", "A7157G", "A7158C", "T7159A", "A7160G", "A7163G", "G7182C", "C7238G", "G7269A", "G7276A", "G7289C", "A7348C", "G7390A", "A7399G", "T7403C", "C7463A", "A7533G", "A7570G", "C7590A", "T7624C", "T7625A", "A7626T", "T7627A", "G7640A", "C7645T", "A7689G", "C7691T", "A7693C", "G7702T", "A7703C", "A7705G", "G7712A", "A7713T", "G7720A", "A7721G", "A7722G", "A7734G", "G7735A", "T7747G", "A7753G", "T7774C", "A7816C", "A7880G", "T7919C", "A7931T", "C7932T", "A7935T", "T7936C", "C7960A", "A8023G", "T8047C", "G8050T", "T8064G", "A8069C", "G8070T", "G8079T", "C8106T", "T8171G", "T8172C", "G8181T", "T8209C", "C8213G", "A8222G", "C8223T", "G8276A", "T8279G", "C8294A", "G8304C", "A8323C", "G8329A", "G8349A", "A8367T", "C8369G", "A8370C", "T8371C", "A8372T", "G8373C", "A8386G", "G8387A", "A8397C", "G8398C", "A8400C", "T8401C", "A8402T", "A8403C", "G8404C", "A8407C", "T8411G", "C8416G", "C8422G", "G8430T", "T8431C", "G8433C", "C8437A", "A8438T", "G8439C", "G8448C", "C8451G", "A8457G", "A8458T", "A8461C", "G8466A", "G8469A", "A8474G", "A8475-", "G8476-", "T8477-", "A8478-", "G8479-", "T8480-", "T8485A", "G8486T", "-8487G", "-8488C", "-8489T", "-8490A", "-8491A", "-8492T", "A8494C", "A8497C", "T8498C", "C8500G", "T8501G", "G8506C", "T8507A", "G8508A", "T8509C", "T8511C", "C8514T", "G8516A", "G8518A", "C8521A", "A8522T", "C8523G", "A8525G", "G8528A", "G8534C", "G8537T", "A8540C", "C8543G", "A8553C", "G8554C", "G8561A", "T8563C", "T8567G", "T8569C", "A8570T", "A8571T", "G8572T", "A8577G", "T8578G", "A8584T", "A8586G", "G8588T", "G8590T", "T8597C", "A8599T", "T8603C", "G8605A", "T8608A", "T8613G", "T8614G", "A8615G", "A8616G", "A8617G", "G8619C", "A8621G", "A8622G", "G8624T", "G8634T", "T8636C", "G8638C", "G8639C", "A8656T", "A8657C", "A8658C", "G8659T", "C8661G", "A8663T", "T8668G", "T8679A", "A8686G", "C8688T", "A8689T", "T8690C", "C8692T", "A8693C", "A8695C", "A8696T", "T8701G", "T8711C", "A8716C", "A8719G", "A8724-", "C8725-", "A8726-", "C8727-", "C8728-", "A8729-", "G8730-", "G8731-", "G8732-", "C8733-", "C8734-", "A8735-"], "INT": ["E13G", "M50I", "V72I", "S119P", "K160R", "K211R"], "RT-p51": ["K64R", "E122K", "I173L", "K174Q", "T200I", "F214L", "A286T", "P321S", "K357Q", "A369V", "T377L", "I393M", "V435I"], "RT-p66": ["K64R", "E122K", "I173L", "K174Q", "T200I", "F214L", "A286T", "P321S", "K357Q", "A369V", "T377L", "I393M", "V435I"], "gp120": ["R18K", "D21E", "V40I", "L58M", "E74D", "V80I", "V126M", "S130T", "E136D", "L137I", "Q142K", "Y145Q", "K150N", "D157N", "N158Q", "N159S", "N160S", "S162E", "A196V", "N204K", "K262E", "H280S", "N311D", "E312K", "A318K", "E319G", "H324Y", "N327-", "S337A", "M345T", "N349T", "S365D", "T366S", "-367Y", "-368Y", "-369N", "I387R", "I411V", "S412R", "N414R", "-433T", "N434T", "N435A", "T436D", "N437S", "G443A", "Q462E", "R472K", "E479Q"], "gp41": ["K77R", "A96D", "Y108I", "D113N", "N129S", "Q130Y", "E133D", "I134L", "E137I", "N140G", "K144R", "D148E", "I193V", "F206L", "T210F", "H211L", "L254R", "S256L", "R259L", "A268V", "R277S", "L290A", "L304V", "T307V", "V325I", "W326G", "H331N", "R334T", "L340F"], "nef": ["G3S", "S9W", "I10P", "V11L", "Q15R", "R19P", "I20P", "R21-", "Q22-", "T23-", "P24-", "A26P", "E28P", "G29R", "V30A", "G31R", "A32E", "V33G", "Q35R", "D38S", "K39Q", "A42T", "V43I", "S45-", "S46-", "M48N", "N49A", "-50N", "-51T", "N52T", "A53G", "C55S", "V56T", "W57R", "A60D", "Q61E", "E64D", "E65D", "R71P", "V74A", "L76P", "R77L", "M79G", "Y81F", "K82D", "G83V", "D86V", "S88N", "F89Y", "L91G", "K92G", "E93Q", "K94D", "D98Y", "G99A", "K105I", "R106L", "Q107D", "I109S", "W113R", "Y115C", "H116F", "T117I", "Q118P", "F120C", "Q125P", "N126S", "T128G", "P129I", "G130R"], "p17": ["K26R", "R30K", "L46I", "K76R", "R91K", "A107E", "T122A"], "p2": ["Q8N", "N9R", "-10N"], "p24": ["L15I", "V27I", "A47G", "A64G", "V83I", "V191I", "S200A"], "p6": ["L1P", "K42R", "L50S"], "p7": ["P9S", "T12P"], "pro": ["T12S", "K14R", "K20R"], "rev": ["V16I", "Y28F", "S30P", "I59V", "S67P", "A68S", "Q74P", "V108G"], "tat": ["A21D", "C31V", "L36I", "S61G", "S62N", "P75S", "I76S", "P84Q"], "vif": ["L59I", "K63T", "I87V", "S131D", "E134D", "A152V", "T154I", "I159R", "R160K", "K176E"], "vpr": ["Q3R", "Y15H", "G41N", "N48D", "I60L", "I63M", "V70I", "G94S"], "vpu": ["T2S", "E5Q", "V21I", "R31K", "D73N", "N81D"]}, "labels": {"aa": "INT: E13G, M50I, V72I, S119P, K160R, K211R; RT-p51: K64R, E122K, I173L, K174Q, T200I, F214L, A286T, P321S, K357Q, A369V, T377L, I393M, V435I; RT-p66: K64R, E122K, I173L, K174Q, T200I, F214L, A286T, P321S, K357Q, A369V, T377L, I393M, V435I; gp120: R18K, D21E, V40I, L58M, E74D, V80I, V126M, S130T, E136D, L137I, Q142K, Y145Q, K150N, D157N, N158Q, N159S, N160S, S162E, A196V, N204K, K262E, H280S, N311D, E312K, A318K, E319G, H324Y, N327-, S337A, M345T, N349T, S365D, T366S, -367Y, -368Y, -369N, I387R, I411V, S412R, N414R, -433T, N434T, N435A, T436D, N437S, G443A, Q462E, R472K, E479Q; gp41: K77R, A96D, Y108I, D113N, N129S, Q130Y, E133D, I134L, E137I, N140G, K144R, D148E, I193V, F206L, T210F, H211L, L254R, S256L, R259L, A268V, R277S, L290A, L304V, T307V, V325I, W326G, H331N, R334T, L340F; nef: G3S, S9W, I10P, V11L, Q15R, R19P, I20P, R21-, Q22-, T23-, P24-, A26P, E28P, G29R, V30A, G31R, A32E, V33G, Q35R, D38S, K39Q, A42T, V43I, S45-, S46-, M48N, N49A, -50N, -51T, N52T, A53G, C55S, V56T, W57R, A60D, Q61E, E64D, E65D, R71P, V74A, L76P, R77L, M79G, Y81F, K82D, G83V, D86V, S88N, F89Y, L91G, K92G, E93Q, K94D, D98Y, G99A, K105I, R106L, Q107D, I109S, W113R, Y115C, H116F, T117I, Q118P, F120C, Q125P, N126S, T128G, P129I, G130R; p17: K26R, R30K, L46I, K76R, R91K, A107E, T122A; p2: Q8N, N9R, -10N; p24: L15I, V27I, A47G, A64G, V83I, V191I, S200A; p6: L1P, K42R, L50S; p7: P9S, T12P; pro: T12S, K14R, K20R; rev: V16I, Y28F, S30P, I59V, S67P, A68S, Q74P, V108G; tat: A21D, C31V, L36I, S61G, S62N, P75S, I76S, P84Q; vif: L59I, K63T, I87V, S131D, E134D, A152V, T154I, I159R, R160K, K176E; vpr: Q3R, Y15H, G41N, N48D, I60L, I63M, V70I, G94S; vpu: T2S, E5Q, V21I, R31K, D73N, N81D"}}}, {"name": "CRF78_cpx_NODE_0000001", "node_attrs": {"div": 0.13363, "clade_membership": {"value": "CRF78_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T479C", "G579A", "G803A", "A1034G", "G1127A", "-1456A", "G1543A", "A1601G", "G2686A", "T3535C", "A3724G", "A3808C", "A3907G", "C3977T", "A4036G", "T4126C", "G4145A", "G4786T", "T4991C", "C5018T", "A5046G", "T5125C", "A5159G", "C5425A", "T5602A", "T5636C", "A5926C", "A6024C", "A6061G", "C6165G", "-6172G", "-6174A", "T6181C", "A6185C", "A6195C", "-6207T", "-6211A", "T6213A", "-6220A", "-6226A", "T6241C", "-6340T", "T6373C", "G6392A", "A6490G", "C6563T", "A6574C", "G6605A", "T6717C", "T6763C", "G6764A", "A6786C", "A6797G", "G6821A", "-6835T", "T6849A", "T6916C", "C6919T", "-6955G", "-7001A", "-7002A", "-7003T", "A7096T", "A7152G", "G7459A", "G7759A", "G7769A", "G7773A", "A7791G", "T7888A", "G7977A", "C7984A", "C8092A", "A8093C", "C8103T", "G8110A", "A8111G", "G8180A", "T8196C", "G8219A", "A8273G", "G8274T", "C8287T", "C8311T", "C8741T"], "INT": ["E11D", "A124T"], "RT-p66": ["V517I"], "gp120": ["H57P", "V180I", "E240D", "D251N", "V288A", "N311T", "K315E", "E323K", "N328-", "I332N", "-382G"], "gp41": ["M54L", "A156T", "S157N", "N195K", "G225E", "F263L", "I264L", "A267V", "T270A", "I298T", "A306T", "R324V"], "p17": ["V82I"], "p7": ["R26K"], "rev": ["H82T", "D88S", "G111E"], "tat": ["Q17K"], "vif": ["R67I", "T154A", "I180T"], "vpr": ["T19A"], "vpu": ["V10A"]}, "labels": {"aa": "INT: E11D, A124T; RT-p66: V517I; gp120: H57P, V180I, E240D, D251N, V288A, N311T, K315E, E323K, N328-, I332N, -382G; gp41: M54L, A156T, S157N, N195K, G225E, F263L, I264L, A267V, T270A, I298T, A306T, R324V; p17: V82I; p7: R26K; rev: H82T, D88S, G111E; tat: Q17K; vif: R67I, T154A, I180T; vpr: T19A; vpu: V10A"}}, "children": [{"name": "KU161143", "node_attrs": {"div": 0.15943, "accession": "KU161143", "clade_membership": {"value": "CRF78_cpx"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "YNTC19"}, "LANL_subtype": {"value": "CRF78_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C467T", "A513C", "A554G", "T571A", "A584C", "C596T", "A605G", "G607A", "T641G", "-655C", "A664G", "C771T", "C917T", "C1098G", "A1176G", "G1192A", "A1350G", "C1351T", "A1355G", "A1404G", "A1442G", "G1619A", "G1640A", "A1832T", "G1968A", "A2018T", "T2035C", "C2236A", "A2275G", "C2296T", "C2353T", "G2459A", "A2498G", "C2596T", "A2626G", "C2635T", "G2683A", "C2968T", "G2972A", "G3019A", "T3049C", "T3059G", "A3120T", "A3145G", "A3193G", "C3225T", "A3279G", "G3316A", "T3466C", "G3490A", "A3584G", "G3644T", "G3685A", "G3718A", "A3760G", "C3773T", "G3787A", "A3802G", "G3877A", "A3891G", "A4183G", "A4306G", "A4420C", "C4679A", "G4689A", "G4769A", "G4817A", "C4865T", "A4951G", "T4989A", "A4990T", "C4992T", "A5005C", "G5059A", "G5075A", "T5162C", "G5170A", "T5237C", "T5245C", "G5312A", "A5357G", "G5382C", "C5398T", "T5412G", "T5424C", "G5448A", "T5451C", "A5570G", "A5581G", "C5612A", "A5613C", "C5614T", "T5695G", "T5696C", "C5727T", "C5763T", "G5856A", "T5857G", "G5907A", "G5954T", "A5955C", "G5956A", "C6004T", "G6028A", "G6029A", "G6076A", "A6094G", "A6119C", "-6170A", "T6171A", "A6173C", "G6179A", "C6185T", "A6186T", "G6187C", "T6193C", "C6196A", "A6197G", "-6198A", "T6199A", "-6201A", "-6202T", "-6204G", "G6206C", "A6212G", "A6213G", "-6216A", "-6217T", "G6218A", "A6219T", "-6222C", "-6225A", "-6229C", "A6230C", "A6235G", "C6263G", "C6278A", "G6283T", "G6323A", "T6328G", "A6329G", "G6336A", "A6339G", "T6358C", "T6460G", "G6463A", "C6559T", "C6574T", "A6638G", "A6648C", "A6715G", "A6725C", "G6726C", "A6752C", "T6758C", "A6766T", "A6771G", "G6774A", "A6785G", "A6819G", "-6830G", "-6834A", "A6839G", "A6840C", "G6841A", "A6847C", "C6854A", "C6861A", "C6875G", "C6951T", "-6956T", "-6957G", "-6958G", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964T", "-6965A", "-6966G", "-6967T", "-6968T", "-6969G", "-6970G", "-6971T", "-6972G", "-6973G", "-6974A", "-6975A", "-6976T", "-6977G", "-6978G", "-6979A", "-6980G", "-6981G", "-6982C", "-6983T", "-6984C", "-6985T", "-6986A", "-6987T", "-6988C", "-6989A", "-6990C", "-6991T", "-6992A", "-6993G", "-6994T", "A7040G", "T7090G", "A7101C", "G7106A", "T7107A", "A7108T", "A7113G", "G7195A", "C7238G", "A7246G", "T7406G", "A7445G", "A7504G", "A7542C", "T7544C", "T7588C", "G7589T", "A7630T", "G7633C", "C7642A", "C7645T", "T7656C", "A7693G", "T7699C", "G7700C", "G7744A", "A7755C", "G7790A", "T7801C", "A7819G", "T7825C", "T7877G", "A7935T", "C7951A", "C8005A", "A8011C", "T8167C", "A8173G", "G8181T", "T8182C", "A8228G", "T8235C", "G8241A", "C8268T", "A8288G", "A8363G", "A8364-", "G8365-", "T8366-", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "G8376-", "G8377-", "A8378-", "A8399G", "A8425C", "G8430A", "T8504C", "G8506C", "G8590A", "T8636A", "C8688A", "A8696G", "A8717G", "G8818A", "A8819G", "A8837G", "A8869G", "G8904A", "A8924G", "G8983A"], "INT": ["N39S", "K215N"], "RT-p51": ["E122K", "I135V", "V293I", "S322A", "Y342F", "T377I", "K395R"], "RT-p66": ["E122K", "I135V", "V293I", "S322A", "Y342F", "T377I", "K395R", "T497A", "I517L"], "gp120": ["S1K", "R18K", "E34S", "E59K", "K89Q", "T104S", "-106L", "-107K", "-108N", "E125-", "V126-", "K127-", "N128-", "L137V", "Q142K", "K143N", "D157N", "N158E", "N159D", "S161N", "D202E", "K262E", "E265A", "R291P", "K300Q", "Y302H", "E304N", "N306S", "G307E", "T311A", "V313A", "K322R", "-326D", "-328A", "K329-", "Q334K", "P336H", "L341V", "T366I", "-367W", "-368W", "-369N", "-370N", "-371G", "-372S", "-373S", "-374W", "-375W", "-376N", "-377G", "-378T", "-379V", "-380S", "-381N", "-383S", "I396V", "S412R", "N416T", "V418N", "N420S", "-433K", "N435T", "T436S", "M447I", "Q462E"], "gp41": ["S35A", "I48V", "K80T", "F81L", "A96S", "E109D", "E110D", "D113E", "I118T", "E133Q", "E151A", "D163S", "S192A", "H211L", "R277S", "V293I", "I309V", "V311A", "G313E", "A322V", "I329V"], "nef": ["S8-", "S9-", "I10-", "V11-", "G12-", "E28A", "V30I", "C55S", "E59G", "G83E", "D98E", "H116N", "G159E", "E176G", "A188T", "I194M"], "p17": ["I60L", "F79Y", "R91K", "D102E"], "p2": ["N9H", "-11A", "-12N"], "p24": ["P14S", "P123A", "S149G", "R154K", "T207V", "S225G"], "p6": ["T35-", "-37P"], "pro": ["T12S", "R57K", "T74S"], "rev": ["I19V", "R53S", "I55L", "S107P", "I109V", "E111D", "S112P"], "tat": ["E2D", "N12K", "L36I", "H65R", "I69V", "I76F", "P81Q"], "vif": ["A35T", "K122R", "Y135I", "P136S", "N140T", "R158K"], "vpr": ["Y45H", "V70I", "I84M", "A93P"], "vpu": ["T2N", "P3S", "F30A"]}, "labels": {"aa": "INT: N39S, K215N; RT-p51: E122K, I135V, V293I, S322A, Y342F, T377I, K395R; RT-p66: E122K, I135V, V293I, S322A, Y342F, T377I, K395R, T497A, I517L; gp120: S1K, R18K, E34S, E59K, K89Q, T104S, -106L, -107K, -108N, E125-, V126-, K127-, N128-, L137V, Q142K, K143N, D157N, N158E, N159D, S161N, D202E, K262E, E265A, R291P, K300Q, Y302H, E304N, N306S, G307E, T311A, V313A, K322R, -326D, -328A, K329-, Q334K, P336H, L341V, T366I, -367W, -368W, -369N, -370N, -371G, -372S, -373S, -374W, -375W, -376N, -377G, -378T, -379V, -380S, -381N, -383S, I396V, S412R, N416T, V418N, N420S, -433K, N435T, T436S, M447I, Q462E; gp41: S35A, I48V, K80T, F81L, A96S, E109D, E110D, D113E, I118T, E133Q, E151A, D163S, S192A, H211L, R277S, V293I, I309V, V311A, G313E, A322V, I329V; nef: S8-, S9-, I10-, V11-, G12-, E28A, V30I, C55S, E59G, G83E, D98E, H116N, G159E, E176G, A188T, I194M; p17: I60L, F79Y, R91K, D102E; p2: N9H, -11A, -12N; p24: P14S, P123A, S149G, R154K, T207V, S225G; p6: T35-, -37P; pro: T12S, R57K, T74S; rev: I19V, R53S, I55L, S107P, I109V, E111D, S112P; tat: E2D, N12K, L36I, H65R, I69V, I76F, P81Q; vif: A35T, K122R, Y135I, P136S, N140T, R158K; vpr: Y45H, V70I, I84M, A93P; vpu: T2N, P3S, F30A"}}}, {"name": "KU161144", "node_attrs": {"div": 0.15793, "accession": "KU161144", "clade_membership": {"value": "CRF78_cpx"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "YNTC35"}, "LANL_subtype": {"value": "CRF78_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G458A", "G495T", "G524A", "A645C", "G654-", "A656G", "A659C", "A662C", "G665A", "C668-", "C669-", "A670-", "G671-", "C672-", "A673-", "A674-", "A675-", "A676-", "G677-", "A678-", "C679-", "A680-", "C681-", "A682-", "G683-", "C684-", "A685-", "G686-", "G687-", "C688-", "A689-", "G690-", "C691-", "A692-", "G693-", "C694-", "T695-", "G696-", "G697-", "C698-", "A699-", "C700-", "A701-", "G702-", "G703-", "A704-", "A705-", "G706-", "C707-", "A711C", "G712A", "C713G", "A714C", "T774G", "T892C", "G978A", "T979C", "C1040T", "G1268A", "C1280T", "A1327G", "T1362A", "C1385T", "A1442C", "C1444T", "G1452A", "C1491A", "C1492T", "A1643G", "T1652C", "A1709G", "C1761A", 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"A9082G", "G9087-", "T9095G"], "INT": ["V32I", "V165I", "T206S"], "RT-p51": ["I135L", "I173V", "T200I", "T312N", "A376T"], "RT-p66": ["I135L", "I173V", "T200I", "T312N", "A376T", "L469I", "H483Y", "Q487K"], "gp120": ["V37A", "V92I", "K127R", "R138K", "K141R", "K150M", "P155Q", "S161R", "S162T", "E241K", "L249I", "N267S", "E304K", "T308A", "E309T", "E312K", "L314F", "A318K", "K320E", "-326P", "N327K", "N332K", "N349I", "F355I", "N358D", "-383N", "T385S", "R391K", "N414S", "N432S", "-433G", "N437T", "N446D", "K448R"], "gp41": ["N129S", "E133A", "D163G", "T165S", "N166R", "F206L", "T210S", "E215G", "R231K", "C253F", "R261S", "A268T", "L290I", "V293S", "K297R", "V321A", "W326G", "A343I"], "nef": ["Q22R", "E63D", "E65G", "Y81F", "I101V", "Q125H", "P129K", "Y135F", "V153A", "N162S"], "p17": ["A54S", "I104L", "A107-", "Q112-", "Q113-", "K114-", "T115-", "Q116-", "Q117-", "A118-", "A119-", "A120-", "G121-", "T122-", "G123-", "S124-", "S125-", "S126-", "K127Q"], "p2": ["Q6H", "A7V", "Q8T"], "p24": ["L15V", "M54T", "V83T", "K199R", "L211I"], "p6": ["Q28K", "K31T", "K42R"], "p7": ["P9I"], "pro": ["K43R"], "rev": ["I18S", "Y28F", "I59L", "A62S", "S67P", "S86N", "V108D"], "tat": ["K29I", "D64E", "N80G"], "vif": ["I31V", "V51I", "H80Q", "N140Y", "N175S", "H192Q"], "vpr": ["L20I", "E25D", "N28S", "N48E", "I63T"], "vpu": ["E5Q", "A10T", "F30C", "R31K", "I33V", "R37K", "K44R", "D62E"]}, "labels": {"aa": "INT: V32I, V165I, T206S; RT-p51: I135L, I173V, T200I, T312N, A376T; RT-p66: I135L, I173V, T200I, T312N, A376T, L469I, H483Y, Q487K; gp120: V37A, V92I, K127R, R138K, K141R, K150M, P155Q, S161R, S162T, E241K, L249I, N267S, E304K, T308A, E309T, E312K, L314F, A318K, K320E, -326P, N327K, N332K, N349I, F355I, N358D, -383N, T385S, R391K, N414S, N432S, -433G, N437T, N446D, K448R; gp41: N129S, E133A, D163G, T165S, N166R, F206L, T210S, E215G, R231K, C253F, R261S, A268T, L290I, V293S, K297R, V321A, W326G, A343I; nef: Q22R, E63D, E65G, Y81F, I101V, Q125H, P129K, Y135F, V153A, N162S; p17: 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"A6992-", "T7009C", "C7016A", "G7026A", "C7045T", "G7054T", "A7057G", "A7060G", "C7087T", "A7088G", "G7089C", "A7096C", "T7099A", "A7101C", "G7106A", "C7107A", "T7117C", "A7133G", "C7134T", "A7136C", "A7138T", "T7144A", "T7147A", "A7155C", "T7156A", "C7165A", "C7171A", "A7177G", "C7201T", "A7234G", "A7238G", "G7244A", "A7246G", "T7250G", "A7252G", "C7267T", "G7270A", "G7276A", "A7279G", "A7322G", "C7344T", "A7375G", "T7403C", "G7428A", "C7463A", "G7502A", "G7517A", "G7519A", "G7594A", "T7618C", "G7628A", "A7666T", "G7677A", "C7678T", "A7688G", "C7691A", "A7692C", "G7702A", "A7705G", "A7713T", "A7714C", "G7720A", "A7741G", "T7748C", "A7755C", "T7762C", "A7764G", "A7765T", "G7769A", "C7770A", "G7773A", "G7777A", "T7876C", "A7885G", "T7918G", "C7921G", "C7929T", "C7932T", "A7935C", "T7936G", "C7937A", "A7938C", "T7939C", "A7941C", "G7942A", "A7943G", "A7947G", "C7959T", "A7962G", "G7977A", "G7992A", "A8011C", "T8035A", "G8036T", "C8037T", "A8050C", "C8092T", "A8093G", "C8095A", "G8098A", 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"E43K", "S162C", "A286T", "V326I", "M403T"], "RT-p66": ["K11T", "E36A", "K39E", "E43K", "S162C", "A286T", "V326I", "M403T", "V466I", "H483Y", "V517I", "I526V"], "gp120": ["V57L", "-106V", "-107N", "T110S", "-111S", "-112S", "-113N", "-114S", "-115S", "-116S", "-117N", "-121M", "E122Q", "I133T", "S136I", "K150R", "N160S", "S162E", "R164I", "V172A", "K204R", "K212R", "V258I", "N267V", "N272D", "H280R", "A288T", "T308N", "K309D", "N312D", "K315N", "Q316N", "A318S", "K322A", "-326P", "I332K", "N334T", "P335S", "M345T", "K361G", "-367Y", "-368K", "-371T", "L388I", "R391K", "Q400H", "S412A", "N416T", "S418K", "T427V", "N434S", "T436N", "K462E", "E464K", "L466V"], "gp41": ["M7V", "A14V", "I24V", "A67T", "V72I", "Y108Q", "E121D", "S125N", "N129D", "Q130T", "E137V", "E151A", "K154S", "A156K", "S157N", "F206L", "P209L", "T210I", "H211P", "H212T", "Q213P", "R214G", "E215G", "E220G", "G225E", "G230D", "A245F", "I264V", "I266V", "A267T", "T270V", "D305N", "T307V", "I329F", "L330R"], "nef": ["P25V", "V43I", "V56E", "R59K", "F120Y", "I133V", "C138T", "D156A", "K158E", "N161D", "S169C", "E174D", "E177H", "A188Q", "K192R", "I194M"], "p1": ["K4R", "I5L"], "p17": ["L34I", "F79Y", "T84V", "E93D", "V94I", "V107A", "Q112K", "A119V", "S125N", "S126N", "Q130H"], "p2": ["Q6H", "-11N"], "p24": ["M10P", "V11I", "M68I", "T72A", "V83I", "I124V", "S149G", "T178S"], "p6": ["P5T"], "p7": ["Q9P", "K10R", "R11K"], "pro": ["L10V", "G16E", "L19I", "R57K", "C67Y"], "rev": ["R14K", "I18T", "S30D", "S31P", "E32R", "I55L", "C63I", "T68Q", "H82C", "L83I", "D84S", "C85D", "D88S", "C89G", "S106P", "I109V"], "tat": ["I69L", "P75S", "I76R", "I77P", "R78Q", "N80D", "P84S", "K85E"], "vif": ["K37N", "L59I", "D78E", "L109T", "D117E", "R131H", "S137T", "R160K", "T188S"], "vpr": ["Y15F", "E25D", "I63M", "I84V"], "vpu": ["V10A", "V14I", "E29Q", "A50E", "L82V"]}, "labels": {"aa": "INT: T21A, N39S, V72I, L101I, N134G, V135L, R136Q, E167D; RT-p51: K11T, E36A, K39E, E43K, S162C, A286T, V326I, M403T; RT-p66: K11T, E36A, K39E, E43K, S162C, A286T, V326I, M403T, V466I, H483Y, V517I, I526V; gp120: V57L, -106V, -107N, T110S, -111S, -112S, -113N, -114S, -115S, -116S, -117N, -121M, E122Q, I133T, S136I, K150R, N160S, S162E, R164I, V172A, K204R, K212R, V258I, N267V, N272D, H280R, A288T, T308N, K309D, N312D, K315N, Q316N, A318S, K322A, -326P, I332K, N334T, P335S, M345T, K361G, -367Y, -368K, -371T, L388I, R391K, Q400H, S412A, N416T, S418K, T427V, N434S, T436N, K462E, E464K, L466V; gp41: M7V, A14V, I24V, A67T, V72I, Y108Q, E121D, S125N, N129D, Q130T, E137V, E151A, K154S, A156K, S157N, F206L, P209L, T210I, H211P, H212T, Q213P, R214G, E215G, E220G, G225E, G230D, A245F, I264V, I266V, A267T, T270V, D305N, T307V, I329F, L330R; nef: P25V, V43I, V56E, R59K, F120Y, I133V, C138T, D156A, K158E, N161D, S169C, E174D, E177H, A188Q, K192R, I194M; p1: K4R, I5L; p17: L34I, F79Y, T84V, E93D, V94I, V107A, Q112K, A119V, S125N, S126N, Q130H; p2: Q6H, -11N; p24: M10P, V11I, M68I, T72A, V83I, I124V, S149G, T178S; p6: P5T; p7: Q9P, K10R, R11K; pro: L10V, G16E, L19I, R57K, C67Y; rev: R14K, I18T, S30D, S31P, E32R, I55L, C63I, T68Q, H82C, L83I, D84S, C85D, D88S, C89G, S106P, I109V; tat: I69L, P75S, I76R, I77P, R78Q, N80D, P84S, K85E; vif: K37N, L59I, D78E, L109T, D117E, R131H, S137T, R160K, T188S; vpr: Y15F, E25D, I63M, I84V; vpu: V10A, V14I, E29Q, A50E, L82V", "clade": "CRF79_0107"}}, "children": [{"name": "MW732901", "node_attrs": {"div": 0.19266, "accession": "MW732901", "clade_membership": {"value": "CRF79_0107"}, "country": {"value": "CN"}, "date": {"value": 2019.0}, "Strain_name": {"value": "B19459"}, "LANL_subtype": {"value": "CRF79_0107"}}, "branch_attrs": {"mutations": {"nuc": ["A426C", "T486C", "A554G", "C587T", "G592A", "G593C", "A655C", "T827C", "T992G", "G1022A", "C1060A", "G1078C", "G1127A", "T1262C", "A1404G", "A1442T", "C1444T", "A1461G", "T1484A", "A1492C", "A1496G", "A1588G", "A1656C", "C1755A", "C1775A", "A1776C", "G1778T", "G1779-", "A1780-", "A1781-", "G1826A", "G1852A", "A2018T", "G2111A", "T2434C", "A2462G", "C2464T", "A2519G", "A2560G", "T2613G", "A2937G", "A2956G", "T3002C", "G3016A", "A3027G", "C3030A", "T3132A", "A3224C", "C3225T", "A3379G", "G3442A", "A3460G", "A3643T", "T3778C", "C3865A", "A3866G", "G3916A", "T4039C", "A4150T", "T4282A", "C4501T", "G4573A", "A4650C", "G4677A", "T4702C", "G4749A", "T4776G", "G4779A", "A4863G", "C4925A", "T4938A", "C5006A", "T5062G", "T5072C", "A5159G", "T5168G", "C5179T", "A5200G", "T5319A", "C5351T", "A5352G", "T5354G", "G5437A", "A5499G", "A5555C", "G5620C", "A5704T", "A5706C", "C5707T", "A5781G", "A5918G", "T5953G", "C5958A", "G5972A", "T6024C", "G6079A", "C6097T", "A6159G", "C6175A", "T6184C", "A6185T", "T6210C", "-6211C", "A6212C", "A6214T", "-6225A", "-6226G", "A6253G", "C6256T", "A6276T", "G6280A", "T6285A", "C6305G", "T6322G", "G6323A", "A6325G", "G6368A", "G6391A", "A6443C", "T6457A", "C6483T", "A6640G", "T6688C", "G6743A", "A6773G", "A6780T", "A6797T", "A6801G", "T6898C", "T6946C", "-6957T", "-6969T", "-6984C", "-6985A", "-6991T", "-6992T", "-6993A", "-6995A", "-6996C", "-6997A", "-6998G", "-6999C", "-7000T", "-7001A", "-7002A", "-7004T", "-7005C", "C7006G", "C7064A", "C7096T", "T7130G", "C7155T", "G7182A", "G7190A", "G7197A", "A7241G", "A7245G", "C7247T", "A7269G", "A7313C", "A7376G", "T7386G", "A7427C", "G7441A", "A7583C", "A7620G", "A7630T", "T7642G", "C7692T", "A7700G", "A7702T", "G7712A", "A7722G", "A7791G", "A7799C", "C7805T", "G7915A", "C8005A", "G8019A", "A8029G", "A8032T", "C8063A", "T8097C", "C8103T", "G8125A", "G8126A", "C8129A", "C8165A", "T8171G", "T8182G", "C8213T", "C8291T", "G8317A", "C8320A", "G8350A", "A8363G", "A8364-", "G8365-", "T8366-", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "A8461G", "G8486A", "G8531C", "G8537A", "G8558A"], "INT": ["I31V"], "RT-p51": ["D6N", "S123G", "I142V", "I173R", "K281R", "K311R", "T312N", "F346Y", "T377L"], "RT-p66": ["D6N", "S123G", "I142V", "I173R", "K281R", "K311R", "T312N", "F346Y", "T377L", "E516D"], "gp120": ["T22A", "H33Q", "T35K", "V40I", "L57P", "N102S", "N107R", "S111Y", "S112T", "N117T", "-118L", "-119K", "-120D", "M126I", "K141M", "V144E", "L151V", "I156M", "D157K", "A172T", "I197L", "N201K", "P210L", "H259Q", "D297N", "R307G", "D309I", "N315Y", "N316S", "K332N", "K368M", "N369-", "-372N", "-373G", "-374T", "-375F", "-376T", "-377Y", "-378N", "-379Y", "-380T", "-381A", "-382N", "-383S", "L426V", "S434I", "G443E", "D446N", "R448K", "I463V", "K464R", "P465S"], "gp41": ["I4L", "V24M", "T25A", "V28G", "N42H", "T94P", "K106R", "D113E", "T130I", "V137I", "N140S", "D163G", "N166Q", "P219L", "S239N", "L254I", "L265S", "T267I", "G275R", "R276S", "L288I", "L290V", "L304F", "R330C"], "nef": ["G3N", "S8-", "S9-", "I10-", "V11-", "H40R", "M48I", "E63K"], "p1": ["N9H"], "p17": ["M31L", "W86Y"], "p2": ["A7V", "N11A", "-12N", "I13V"], "p24": ["H87Q", "T110N", "G116A", "S225G"], "p6": ["P25M", "-26Q", "Q28E", "E29H", "Q30P", "K31P", "D32-", "K33-", "E34-", "H35-", "P36-", "L38S"], "p7": ["F6L", "K41R"], "pro": ["V10I", "T74S"], "rev": ["K14Q", "R53S", "S61G", "T62S", "Q68P", "P72H", "G93K", "T94K", "P106H", "V108G", "S112A"], "tat": ["A21T", "Q60P"], "vif": ["N22H", "F39S", "V55I", "L64V", "V65I", "N93D", "D113E", "S118T", "N140Q", "I159R"], "vpr": ["T19A", "L22V", "F72Y", "I83V"], "vpu": ["E5Q", "F30I", "I33F"]}, "labels": {"aa": "INT: I31V; RT-p51: D6N, S123G, I142V, I173R, K281R, K311R, T312N, F346Y, T377L; RT-p66: D6N, S123G, I142V, I173R, K281R, K311R, T312N, F346Y, T377L, E516D; gp120: T22A, H33Q, T35K, V40I, L57P, N102S, N107R, S111Y, S112T, N117T, -118L, -119K, -120D, M126I, K141M, V144E, L151V, I156M, D157K, A172T, I197L, N201K, P210L, H259Q, D297N, R307G, D309I, N315Y, N316S, K332N, K368M, N369-, -372N, -373G, -374T, -375F, -376T, -377Y, -378N, -379Y, -380T, -381A, -382N, -383S, L426V, S434I, G443E, D446N, R448K, I463V, K464R, P465S; gp41: I4L, V24M, T25A, V28G, N42H, T94P, K106R, D113E, T130I, V137I, N140S, D163G, N166Q, P219L, S239N, L254I, L265S, T267I, G275R, R276S, L288I, L290V, L304F, R330C; nef: G3N, S8-, S9-, I10-, V11-, H40R, M48I, E63K; p1: N9H; p17: M31L, W86Y; p2: A7V, N11A, -12N, I13V; p24: H87Q, T110N, G116A, S225G; p6: P25M, -26Q, Q28E, E29H, Q30P, K31P, D32-, K33-, E34-, H35-, P36-, L38S; p7: F6L, K41R; pro: V10I, T74S; rev: K14Q, R53S, S61G, T62S, Q68P, P72H, G93K, T94K, P106H, V108G, S112A; tat: A21T, Q60P; vif: N22H, F39S, V55I, L64V, V65I, N93D, D113E, S118T, N140Q, I159R; vpr: T19A, L22V, F72Y, I83V; vpu: E5Q, F30I, I33F"}}}, {"name": "CRF79_0107_NODE_0000001", "node_attrs": {"div": 0.17160999999999998, "clade_membership": {"value": "CRF79_0107"}}, "branch_attrs": {"mutations": {"nuc": ["T570C", "C688T", "C1453T", "A1486G", "G1489C", "A1500-", "T1501-", "T1502-", "-1504T", "-1505T", "G1508A", "A1718G", "A2007G", "T2499C", "C2694T", "T2735C", "G3473A", "G3869A", "G4060A", "G4870A", "A5357G", "T5515C", "A5702G", "C5984T", "A6192G", "A6219G", "A6232G", "C6238T", "T6331C", "C6499T", "A6520G", "G6605A", "G6631T", "A6669G", "A6779G", "C6850A", "A6854G", "-6974A", "-6976T", "-6978A", "A7108G", "T7153G", "A7154T", "A7268G", "A7373G", "C7392T", "A7477G", "A7574C", "G7668A", "C8051A", "G8528A"], "INT": ["V32I"], "RT-p51": ["I135T", "T200I", "F214L"], "RT-p66": ["I135T", "T200I", "F214L", "D460N"], "gp120": ["H44Y", "D251N", "D272G", "T385-", "R472E"], "gp41": ["A30V", "I91L", "R122K", "D133K"], "p17": ["Y79H", "A107E", "A118V"], "p2": ["-10V"], "p7": ["I12-"], "pro": ["K70R"], "tat": ["Y47H"], "vif": ["I31V", "S95N"], "vpu": ["K32R"]}, "labels": {"aa": "INT: V32I; RT-p51: I135T, T200I, F214L; RT-p66: I135T, T200I, F214L, D460N; gp120: H44Y, D251N, D272G, T385-, R472E; gp41: A30V, I91L, R122K, D133K; p17: Y79H, A107E, A118V; p2: -10V; p7: I12-; pro: K70R; tat: Y47H; vif: I31V, S95N; vpu: K32R"}}, "children": [{"name": "KY216146", "node_attrs": {"div": 0.18683, "accession": "KY216146", "clade_membership": {"value": "CRF79_0107"}, "country": {"value": "CN"}, "date": {"value": 2015.0}, "Strain_name": {"value": "SX15DT013"}, "LANL_subtype": {"value": "CRF79_0107"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T201C", "G279A", "-280G", "A303T", "-304T", "G354A", "A410G", "G665A", "A685C", "A692C", "T979C", "C1115A", "T1334A", "T1335C", "A1359T", "T1409C", "A1719G", "A1738G", "C1783T", "A1921G", "A1998G", "C2127A", "A2254G", "A2400G", "A2422G", "G2566A", "G2580A", "T2613C", "C2665A", "T2770C", "G2881A", "A3136G", "A3637C", "A3676G", "A3761G", "A3768G", "G3770A", "T3793C", "A3883C", "T3976C", "A4694C", "G4802A", "A4838G", "G4976A", "C5004A", "A5045G", "G5048A", "G5066A", "A5112C", "T5237C", "G5566A", "A5567G", "G5619A", "A5644G", "C5802T", "A5864G", "C5866A", "T5917G", "A5962G", "A5983C", "C6023T", "C6026T", "G6029A", "A6030C", "A6044G", "C6067A", "G6076T", "A6158C", "C6160T", "G6167A", "G6195A", "-6211G", "A6216C", "G6217A", "T6222G", "G6223-", "C6224-", "A6260G", "C6317G", "A6325C", "T6328G", "T6395A", "T6427C", "T6430C", "C6488A", "A6730G", "A6742G", "C6790A", "G6807C", "C6819A", "A6848C", "T6857G", "C6888T", "A6889G", "A6926G", "G6935A", "T6949G", "A6954G", "C6955G", "A6956G", "-6957C", "-6969A", "T6970A", "A6971T", "-6972T", "-6973C", "-6975T", "-6977T", "-6979A", "-6980G", "-6981G", "-6982A", "-6983T", "-6984A", "-6985A", "A6987T", "T6988C", "-6991C", "T6994-", "T7003-", "C7008A", "A7026G", "G7057A", "A7144G", "T7150C", "A7151G", "A7152G", "A7157G", "A7163C", "C7164A", "C7170T", "G7234A", "A7517C", "T7555G", "A7617C", "A7629C", "G7640A", "A7644G", "T7647C", "A7655T", "C7690A", "A7701G", "T7713C", "G7729T", "A7771T", "T7959C", "C8011A", "A8035T", "A8098G", "G8159A", "A8216G", "C8451T", "G8554A", "T8584A", "A8604G", "A8656G", "C8747T", "A8780G", "A8793G", "G8796A", "A8815C", "G8834A", "A8947T", "G9006C"], "RT-p51": ["T11K", "K102R", "C162Y", "I173T"], "RT-p66": ["T11K", "K102R", "C162Y", "I173T", "E514D", "I556V", "K558R", "V559I"], "gp120": ["N4E", "D21E", "L57F", "E59T", "N64D", "N71K", "E74D", "N102H", "D105N", "N107S", "S110G", "-118S", "-119T", "I136V", "Q155E", "N158K", "S181T", "R212S", "D312E", "S318T", "A322E", "K332Q", "T334A", "S335A", "T345M", "N358D", "G361S", "S365R", "K368R", "-370G", "-385N", "K391R", "K404Q", "N433G", "N435D", "T437Q", "T439I"], "gp41": ["I72L", "I84M", "N105T", "N109T", "D113N", "N114S", "M115T", "M118L", "D129E", "K133R", "V137A", "Q142H", "K156N", "N166K", "G286R", "N305D"], "nef": ["G3S", "E64D", "R71K", "F81Y", "S88G", "K105R", "R151G", "E152K", "E158A", "Y202F"], "p17": ["V7I", "Q117P"], "p2": ["H6Q"], "p24": ["I83T", "D128E", "T210S"], "p6": ["N14D", "E19-", "T21G", "S23T", "P24S", "-26L", "H35L", "L38P", "V39S"], "pro": ["Y67C"], "rev": ["T18A", "L55I", "I63F", "S84G", "G104E"], "tat": ["D64S", "S84P"], "vif": ["K36N", "K176Q"], "vpr": ["Q3P", "Y45H"], "vpu": ["I13V", "F30I"]}, "labels": {"aa": "RT-p51: T11K, K102R, C162Y, I173T; RT-p66: T11K, K102R, C162Y, I173T, E514D, I556V, K558R, V559I; gp120: N4E, D21E, L57F, E59T, N64D, N71K, E74D, N102H, D105N, N107S, S110G, -118S, -119T, I136V, Q155E, N158K, S181T, R212S, D312E, S318T, A322E, K332Q, T334A, S335A, T345M, N358D, G361S, S365R, K368R, -370G, -385N, K391R, K404Q, N433G, N435D, T437Q, T439I; gp41: I72L, I84M, N105T, N109T, D113N, N114S, M115T, M118L, D129E, K133R, V137A, Q142H, K156N, N166K, G286R, N305D; nef: G3S, E64D, R71K, F81Y, S88G, K105R, R151G, E152K, E158A, Y202F; p17: V7I, Q117P; p2: H6Q; p24: I83T, D128E, T210S; p6: N14D, E19-, T21G, S23T, P24S, -26L, H35L, L38P, V39S; pro: Y67C; rev: T18A, L55I, I63F, S84G, G104E; tat: D64S, S84P; vif: K36N, K176Q; vpr: Q3P, Y45H; vpu: I13V, F30I"}}}, {"name": "KY216147", "node_attrs": {"div": 0.18667999999999998, "accession": "KY216147", "clade_membership": {"value": "CRF79_0107"}, "country": {"value": "CN"}, "date": {"value": 2015.0}, "Strain_name": {"value": "SX15JC06"}, "LANL_subtype": {"value": "CRF79_0107"}}, "branch_attrs": {"mutations": {"nuc": ["G310A", "G425A", "T494C", "T506C", "G579A", "G581A", "G761A", "G803A", "C884T", "T1117C", "C1211T", "A1253G", "A1442C", "A1619G", "G1646C", "A1700G", "C1721T", "G1727A", "C1755T", "G1760A", "C1783A", "C1792T", "A2012G", "G2219A", "G2398A", "A2403G", "C2521T", "G2764A", "A2884G", "A2995G", "T3045C", "A3094G", "A3249C", "T3399C", "A3430T", "G3435A", "G3448A", "C3628T", "G3816A", "T3850A", "A3907G", "G3997A", "A4686G", "G4727A", "C4992T", "A5061C", "A5065G", "T5102C", "T5147C", "A5154C", "G5236A", "C5239T", "A5246T", "A5278G", "T5286C", "T5292C", "C5425A", "C5599A", "A5603-", "C5692G", "A5695T", "A5745C", "C5826T", "G5845A", "A5848G", "A5907G", "A6061G", "G6121A", "A6137G", "G6174A", "G6189A", "C6190T", "G6201A", "T6210G", "-6211T", "T6213C", "A6214C", "A6215T", "G6217T", "C6220G", "-6225A", "-6226G", "C6241T", "A6251G", "A6327T", "T6345G", "G6397A", "A6425G", "C6441T", "T6454C", "T6460C", "G6465A", "G6489A", "A6584G", "C6612T", "T6676C", "T6778A", "C6790T", "A6797C", "A6798T", "T6802G", "T6808C", "C6829T", "C6830A", "C6831G", "A6832C", "A6834G", "T6835C", "-6836G", "-6837C", "-6838T", "A6842G", "C6843A", "A6845C", "C6855A", "A6947T", "G6948A", "-6957A", "T6958G", "A6960C", "G6962A", "G6963A", "A6965G", "C6966A", "A6967T", "T6968A", "-6969G", "-6972G", "-6973G", "-6975C", "-6977A", "-6979T", "T6986A", "A6990C", "-6991A", "-6992G", "-6993C", "-6995G", "-6996A", "-6997G", "-6998G", "-6999A", "-7000T", "-7001A", "-7002C", "-7004A", "-7005A", "C7006T", "A7007T", "C7009G", "A7036G", "A7065G", "T7114C", "A7149C", "T7150A", "A7161G", "G7199A", "C7684T", "A7689C", "A7801T", "C7938A", "T8112G", "G8133A", "G8241A", "A8263G", "A8349G", "G8388A", "A8469G", "T8505A", "G8510A", "C8568T", "A8693G", "C8715G", "A8717C", "A8746T", "G8794A", "A8844G", "G8888A", "G8914A", "T8923G", "G9019T", "C9023T", "T9072C", "T9074G", "T9078C", "C9108-", "-9109T"], "INT": ["R14K", "D25E"], "RT-p51": ["E42K", "K103R", "V317A", "K385T", "V435A"], "RT-p66": ["E42K", "K103R", "V317A", "K385T", "V435A", "S447N"], "gp120": ["K18R", "T95A", "N117S", "-118T", "-119Y", "-120G", "T133A", "D157N", "N158-", "N159-", "S160-", "S161-", "E162S", "I164R", "T191A", "A196V", "R204K", "R212H", "I244V", "A253V", "N308K", "N315L", "N316K", "P326S", "N327S", "-328A", "T330E", "I331L", "T334E", "S365Y", "-370S", "-372V", "K404R", "N432T", "N433K", "N436S", "D449N"], "gp41": ["N109K", "D129A", "T212N", "P219L", "V270G", "R277N", "G313E"], "nef": ["V16I", "I43V", "C55S", "Q125D", "Y135F", "R151K", "M168V", "M182I", "R191H", "M194R"], "p17": ["V82I"], "p24": ["I129T"], "p6": ["P25L"], "pro": ["I72V"], "rev": ["D30E", "S88R"], "tat": ["Q17K", "P77T"], "vif": ["K34E", "P136S", "N140H", "I159L", "K160R", "N190H"], "vpr": ["F15L", "E17A", "N48Y", "I61T", "M63T"], "vpu": ["Q29E", "D80N", "N81D"]}, "labels": {"aa": "INT: R14K, D25E; RT-p51: E42K, K103R, V317A, K385T, V435A; RT-p66: E42K, K103R, V317A, K385T, V435A, S447N; gp120: K18R, T95A, N117S, -118T, -119Y, -120G, T133A, D157N, N158-, N159-, S160-, S161-, E162S, I164R, T191A, A196V, R204K, R212H, I244V, A253V, N308K, N315L, N316K, P326S, N327S, -328A, T330E, I331L, T334E, S365Y, -370S, -372V, K404R, N432T, N433K, N436S, D449N; gp41: N109K, D129A, T212N, P219L, V270G, R277N, G313E; nef: V16I, I43V, C55S, Q125D, Y135F, R151K, M168V, M182I, R191H, M194R; p17: V82I; p24: I129T; p6: P25L; pro: I72V; rev: D30E, S88R; tat: Q17K, P77T; vif: K34E, P136S, N140H, I159L, K160R, N190H; vpr: F15L, E17A, N48Y, I61T, M63T; vpu: Q29E, D80N, N81D"}}}]}]}, {"name": "NODE_0000696", "node_attrs": {"div": 0.12825999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T4126C", "T5896A", "T5911A", "G5915A", "A5916C", "T5917C", "C5923T", "C5944T", "C5951T", "A5962G", "G5965A", "C5968T", "A6020G", "C6023G", "C6026T", "A6037G", "A6065G", "G6076A", "G6092A", "G6133A", "T6163C", "C6166T", "-6170T", "-6174A", "-6216T", "-6220G", "A6221G", "-6225G", "-6226A", "A6261G", "A6262C", "C6263A", "G6267A", "A6276T", "C6278-", "T6285A", "T6322A", "G6336C", "T6337C", "A6339G", "-6340C", "A6349G", "T6403G", "T6412C", "T6427C", "A6430G", 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"clade_membership": {"value": "CRF59_01B"}, "country": {"value": "CN"}, "date": {"value": 2012.0}, "Strain_name": {"value": "12CN.YNKM200199"}, "LANL_subtype": {"value": "CRF59_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T377C", "A389G", "A410G", "T435A", "A452G", "C471A", "C548T", "T570C", "G690A", "G696A", "A715C", "C763T", "T771G", "T774G", "A812G", "C851T", "A1339G", "A1350G", "A1455-", "C1456-", "T1457-", "-1458A", "-1459A", "-1460G", "T1481C", "G1493T", "A1494C", "C1511T", "C1535T", "G1586A", "G1661A", "T1729C", "C1755-", "T1756-", "G1757-", "A1758-", "A1759-", "G1760-", "C1761-", "A1762-", "G1763-", "G1764-", "A1765-", "A1766-", "A1768T", "A1770C", "A1772G", "C1826A", "G1845A", "T1868C", "A1894C", "G1932A", "T2093C", "G2230A", "T2479C", "G2542A", "G2602A", "A2629G", "C2653T", "A2665G", "A2790G", "A2923G", "G3071A", "G3097A", "C3140T", "C3160G", "G3208A", "A3388G", "C3391T", "G3435A", "A3473G", "A3503G", "A3529G", "A3676G", "T3754C", "G3769A", "A3787G", "G3816A", "A3836G", 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"R287K", "S306N", "E308G", "N311E", "I317V", "Q322K", "S341P", "-371T", "-372D", "-374N", "-375E", "N378-", "T380-", "R391K", "M406I", "N433S", "N434T", "N436G", "D446N"], "gp41": ["E110D", "E113G", "G125D", "E137K", "D163N", "K166N", "F206L", "L209P", "S239N", "T298I"], "nef": ["S9N", "Q22R", "Q35R", "D38E", "I48M", "N49D", "K59R", "H125D", "Y135F", "R151K", "N162S", "V180M"], "p17": ["L34I", "L46I", "F79H", "A119T", "D121N", "K127T"], "p2": ["-11K", "T12-"], "p24": ["T11V", "S14A", "L15V", "K203R", "T207A"], "p6": ["M17T", "-24Q", "K27-", "Q28-", "E29-", "Q30-", "K31-"], "p7": ["Q9H", "K10Q"], "pro": ["L10I", "G16E", "R45K", "F99L"], "rev": ["S53C", "N116D"], "tat": ["F74P"], "vif": ["K63I", "L109I", "T188I"], "vpr": ["N48E"], "vpu": ["P3S", "A8V", "L12F", "A15T", "K37R", "M71V"]}, "labels": {"aa": "INT: R14K, T21A, V112I, Q136K, I208V; RT-p51: I178M, Y232C, V326I; RT-p66: I178M, Y232C, V326I, S447N, N460D, T470A; gp120: E4G, Q5H, E34A, N52S, K69N, Q77H, T104N, T109K, M119-, T120-, M121-, E122-, E123-, G124-, E125-, M126-, K142I, L147M, I153L, P155S, D159G, L198F, E240K, K247Q, I255T, M281I, R287K, S306N, E308G, N311E, I317V, Q322K, S341P, -371T, -372D, -374N, -375E, N378-, T380-, R391K, M406I, N433S, N434T, N436G, D446N; gp41: E110D, E113G, G125D, E137K, D163N, K166N, F206L, L209P, S239N, T298I; nef: S9N, Q22R, Q35R, D38E, I48M, N49D, K59R, H125D, Y135F, R151K, N162S, V180M; p17: L34I, L46I, F79H, A119T, D121N, K127T; p2: -11K, T12-; p24: T11V, S14A, L15V, K203R, T207A; p6: M17T, -24Q, K27-, Q28-, E29-, Q30-, K31-; p7: Q9H, K10Q; pro: L10I, G16E, R45K, F99L; rev: S53C, N116D; tat: F74P; vif: K63I, L109I, T188I; vpr: N48E; vpu: P3S, A8V, L12F, A15T, K37R, M71V"}}}, {"name": "KF011494", "node_attrs": {"div": 0.17751, "accession": "KF011494", "clade_membership": {"value": "CRF59_01B"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "GD070126"}, "LANL_subtype": {"value": "CRF59_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A354G", "G534A", "C535A", "G562T", "G607A", "A640G", "G762A", "C1060A", "A1226G", "A1601G", "A1660G", "G1769A", "A1837G", "G2068A", "G2413A", "C2644T", "T2863C", "C3160T", "A3595G", "G3644A", "A3694G", "A4303G", "G4420A", "C4652T", "A4695G", "T4701G", "A4760C", "A4816G", "T4912A", "C5242T", "A5704C", "C5797-", "T5798-", "-5800T", "A5935C", "A6060G", "C6097T", "C6115T", "A6124C", "T6169G", "-6175G", "A6176-", "A6177-", "T6178-", "A6179-", "A6180-", "A6182-", "C6183-", "C6189-", "C6190-", "A6191-", "A6194-", "G6195-", "A6198G", "-6204A", "-6211G", "-6222A", "G6227A", "C6262T", "A6302G", "A6303C", "T6306C", "G6323A", "A6333G", "A6335G", "T6361C", "A6488G", "T6592A", "G6634A", "C6692A", "-6697G", "C6807T", "A6962G", "G6963A", "-6966A", "-6968A", "-6970T", "-6971A", "-6972G", "-6973T", "-6980T", "-6981G", "-6982G", "-6996G", "-6997G", "A7000G", "A7095T", "A7151G", "A7155G", "A7161T", "A7345G", "C7605T", "T7606G", "A7700T", "G7807A", "C7926T", "C8005A", "A8023G", "A8032G", "C8268T", "A8353G", 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T110N; rev: L28F, I59V, T62A; tat: P73S; vif: K37E, F39V, K77R, L109Q; vpu: I33L"}}}]}, {"name": "CRF59_01B_NODE_0000002", "node_attrs": {"div": 0.17017, "clade_membership": {"value": "CRF59_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C471G", "C688G", "G908A", "G956A", "G977A", "G978C", "T1052C", "T1682C", "G1685A", "T2092C", "G2311A", "A2611G", "T2632C", "C3030A", "G3772A", "A3838G", "A4697C", "T4776A", "A4845G", "C5651T", "A5781C", "T5787A", "C5788T", "G5791T", "A5792C", "A5795C", "-5800A", "A5808G", "-5809G", "-5810G", "-5811G", "T5813-", "G5814-", "G5815-", "A5816-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "C5884A", "A5907G", "C5916A", "T5929C", "A6030C", "A6131G", "C6183A", "G6195A", "-6204T", "-6211G", "-6222A", "A6279G", "A6333-", "G6403A", "-6697G", "G6716A", "A6773G", "G6774A", "T6808C", "-6835G", "-6838T", "-6841G", "C6862T", "A6900C", "A6936C", "-6972G", "-6973T", "-6974A", "-6975C", "-6976T", "-6977G", "-6979A", "-6982G", "-6985A", "T6988C", "A7005G", "A7095C", "T7150C", "A7154G", "C7691A", "A7701G", "G8006A", "G8008A", "A8011C", "T8047C", "G8102A", "A8264T", "A8288C", "T8371A", "T8374C", "A8403G", "T8505A"], "RT-p51": ["T312N"], "RT-p66": ["T312N"], "gp120": ["K18R", "T21N", "E59A", "K93E", "K142R", "R164T", "A288T", "R307E", "N349T", "Q361P", "N369S", "Q414P"], "gp41": ["Q130K", "D133S", "V235I", "A267T", "I321L", "I329L"], "nef": ["I10K", "V11A", "K21E"], "p17": ["L46V", "A118G"], "p24": ["V83L"], "rev": ["A54T", "I55L", "S67P"], "vif": ["K37N", "L64I", "I87V"], "vpu": ["A15V", "E58D", "D60E", "E62S", "E63A", "D65M", "L67M", "E70-", "M71-", "G72-"]}, "labels": {"aa": "RT-p51: T312N; RT-p66: T312N; gp120: K18R, T21N, E59A, K93E, K142R, R164T, A288T, R307E, N349T, Q361P, N369S, Q414P; gp41: Q130K, D133S, V235I, A267T, I321L, I329L; nef: I10K, V11A, K21E; p17: L46V, A118G; p24: V83L; rev: A54T, I55L, S67P; vif: K37N, L64I, I87V; vpu: A15V, E58D, D60E, E62S, E63A, D65M, L67M, E70-, M71-, G72-"}}, "children": [{"name": "KJ484434", "node_attrs": {"div": 0.18977, "accession": "KJ484434", "clade_membership": {"value": "CRF59_01B"}, "country": {"value": "CN"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11CN.LNSY300876"}, "LANL_subtype": {"value": "CRF59_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A389G", "A458G", "A509G", "T641A", "A717G", "T771G", "T774G", "A1157C", "A1217G", "G1253A", "A1343C", "G1430A", "G1451A", "A1464C", "A1494G", "A1495G", "G1553A", "A1562G", "T1571G", "A1673G", "G1760A", "G1845A", "A1876C", "G2002A", "A2075C", "C2326T", "T2449A", "T2452G", "A2498G", "A2626C", "C2668T", "A2710G", "T2770C", "A3200G", "A3565G", "G3667A", "A3845G", "T3850A", "A3866G", "A3868G", "C3908G", "A3937G", "T3962C", "A4021G", "T4153G", "A4176G", "G4264A", "G4276A", "G4294A", "G4539A", "G4677A", "T4701G", "G4749A", "C4807T", "C4863A", "T4910C", "G5058A", "G5060T", "A5122G", "T5237C", "C5292T", "A5556C", "A5576T", "T5612A", "T5613A", "A5620C", "C5621A", "G5627T", "T5628G", "A5635G", "T5636C", 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"G83A", "S88G", "K104Q", "Q107K", "H125Q", "R151G", "V153I", "D156N", "S187T"], "p17": ["D102E", "I128V"], "p2": ["M14L"], "p24": ["T11A", "S14A", "L15V"], "p7": ["K10G"], "pro": ["G16E", "I93L"], "rev": ["K14T", "I21F", "S53N", "V64L", "S86D", "E87K", "G108D", "T114N"], "tat": ["Q60H", "N67I", "P75T", "P84Q"], "vif": ["V31I", "F39V", "V55I", "T74I", "G158S", "K179R"], "vpr": ["Y45H", "T63I"], "vpu": ["L2Q", "E5Q", "G7V", "I10A", "Y27G", "K37E", "L82V"]}, "labels": {"aa": "INT: S24G, D25E, I31V, L45V, N134S, S255N; RT-p51: I135V, E177D, T369A; RT-p66: I135V, E177D, T369A; gp120: T2A, E4D, D71N, N105D, Y106R, T109N, T110-, E122G, S136G, K143R, V151T, V154M, D159N, N160-, T161-, T164S, A196V, E240K, A253T, V258I, T269A, E294D, D297N, E326K, I332V, T366K, -370S, -371W, -372P, -374T, -375E, -376G, -377S, -379R, -381S, -382N, T385-, R391K, R416S, L424I; gp41: S107T, E109G, N140Y, K166Q, S210Y, A268T, R277S, V290I, L296I, Q323R, L330C, L340A; nef: K4R, S8N, T27A, D38A, C55S, Q61H, D64E, G83A, S88G, K104Q, Q107K, H125Q, R151G, V153I, D156N, S187T; p17: D102E, I128V; p2: M14L; p24: T11A, S14A, L15V; p7: K10G; pro: G16E, I93L; rev: K14T, I21F, S53N, V64L, S86D, E87K, G108D, T114N; tat: Q60H, N67I, P75T, P84Q; vif: V31I, F39V, V55I, T74I, G158S, K179R; vpr: Y45H, T63I; vpu: L2Q, E5Q, G7V, I10A, Y27G, K37E, L82V"}}}, {"name": "JX960635", "node_attrs": {"div": 0.18178999999999998, "accession": "JX960635", "clade_membership": {"value": "CRF59_01B"}, "country": {"value": "CN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09LNA423"}, "LANL_subtype": {"value": "CRF59_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A380G", "G455A", "A474G", "T479C", "G762A", "T782C", "G803A", "C1060A", "A1525G", "G1661A", "G1978T", "A2140G", "T2347G", "A2374G", "T2383C", "T2499G", "A2699G", "G2704A", "G2920A", "A2929G", "C2939G", "C2975A", "T3068A", "C3359T", "A3388G", "A3601G", "A3682C", "A3757G", "A3836G", "T3856C", "G3869A", "A3891G", "C4009T", "G4037A", "A4372G", "G4805A", "G5236A", 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P294T, L325I; RT-p66: I135R, I202V, L282V, P294T, L325I, E529D; gp120: K69E, T107N, T110K, -111N, -112V, -113M, -114K, -115D, -116T, -117M, -118N, E123K, M126I, N160T, L198F, K247R, D251N, I255N, Q300K, H302Y, I332R, Q335R, T366I, S368W, S369P, S373-, -379G, -381G, -382Q, -383S, -384N, T387I, A408T, I411S, R412K, N434D, N436E, T439I, R448K; gp41: T101I, E113D, M118T, N129Y, N140I, K144R, T208I, L265S, V290A, I307L, I332V; nef: -50N, -51T, N52D, A53S, D54V, C55-, V56-, N116H; p17: N47D; p24: T110N; p7: K20R; pro: E60D; rev: S53H, I59V, S92P; tat: P73S, F74S; vpr: N48H; vpu: P3S, A8V, L12F, I28L, H74R"}}}]}]}, {"name": "results/subtype_trees/CRF15_01B.nwk", "node_attrs": {"div": 0.13537999999999997, "clade_membership": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C143-", "C144-", "T145-", "C146-", "A147-", "G148-", "A149-", "C155-", "T156-", "A157-", "G158-", "A159-", "C160-", "C1792T", "A2629G", "G5864A", "G5902A", "G5956T", "C5974T", "T6046C", "G6085T", "G6088A", 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D139T, I243V, E247S, F289W, R307S, A318T, K322R, I332V, I396V; gp41: N42R, I91L, N129K, Q130E, D133T, L135I, Q147L, I187V, H212Q; nef: Y202F; rev: A37T; tat: G83D", "clade": "CRF15_01B"}}, "children": [{"name": "CRF15_01B_NODE_0000001", "node_attrs": {"div": 0.13639999999999997, "clade_membership": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C1741T", "A1743-", "C3542T", "A5142T", "C5384T", "A5603-", "A6230C", "A6329G", "-6838C", "G7004A", "A7161C", "G7977A", "C8092A", "C8287T", "G8818A"], "RT-p66": ["H483Y"], "gp120": ["-123G", "M126L", "N159D", "-368N", "-382G", "-383N"], "gp41": ["G225E", "F263L"], "nef": ["R59E", "G159E"], "p2": ["-11A", "-12N"], "tat": ["P3L"], "vif": ["N186Y"], "vpr": ["E13V"]}, "labels": {"aa": "RT-p66: H483Y; gp120: -123G, M126L, N159D, -368N, -382G, -383N; gp41: G225E, F263L; nef: R59E, G159E; p2: -11A, -12N; tat: P3L; vif: N186Y; vpr: E13V"}}, "children": [{"name": "CRF15_01B_NODE_0000002", "node_attrs": {"div": 0.15351999999999996, 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"L305I", "T318V", "-326E", "P341L", "-374T", "N378-", "-379N", "K404R", "K412E"], "gp41": ["T208I", "E224G", "I264L", "T270I", "G281A", "L285W", "G286W", "G293I", "I301V", "D305N", "G313E", "L330I"], "nef": ["G3S", "K21R", "V43I", "E65G", "Q125H", "E152D", "N157T", "I194L"], "p1": ["K4R", "I5F"], "p17": ["A15D", "E55D", "E93Q"], "p24": ["E45D", "D128E", "V148T"], "p6": ["G18K", "T21-", "T22-", "S23-"], "rev": ["E11D", "S67P", "H82T", "R99S", "S103L", "G104V", "S107P", "V108A", "I109V", "G111D"], "tat": ["A21P", "S23G", "I45L", "T58P", "P73S"], "vif": ["I31V", "R63I", "N93K", "R122G", "R131S", "R160K"], "vpu": ["V43L", "D62E"]}, "labels": {"aa": "INT: K211R; RT-p51: K20R, V21I, E43Q, V60I, T369A, K395R; RT-p66: K20R, V21I, E43Q, V60I, T369A, K395R, L452I, D460N, V517I; gp120: N102H, D105N, L106V, -107S, N108K, D144-, K150T, V154I, Q155P, D157E, N167S, T212K, E294D, L305I, T318V, -326E, P341L, -374T, N378-, -379N, K404R, K412E; gp41: T208I, E224G, I264L, T270I, G281A, L285W, G286W, G293I, I301V, D305N, G313E, L330I; nef: G3S, K21R, V43I, E65G, Q125H, E152D, N157T, I194L; p1: K4R, I5F; p17: A15D, E55D, E93Q; p24: E45D, D128E, V148T; p6: G18K, T21-, T22-, S23-; rev: E11D, S67P, H82T, R99S, S103L, G104V, S107P, V108A, I109V, G111D; tat: A21P, S23G, I45L, T58P, P73S; vif: I31V, R63I, N93K, R122G, R131S, R160K; vpu: V43L, D62E"}}, "children": [{"name": "JN248351", "node_attrs": {"div": 0.17280999999999996, "accession": "JN248351", "clade_membership": {"value": "CRF15_01B"}, "country": {"value": "TH"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05TH522586"}, "LANL_subtype": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T357G", "G363A", "A369G", "G424A", "A426C", "A491C", "T531C", "A562G", "G607A", "A715C", "A724G", "T771C", "G906A", "A1002G", "T1003C", "A1256G", "C1322T", "A1448G", "C1449A", "A1492C", "G1619A", "T1646C", "T1682C", "A1718G", "A1719G", "A1735-", "A1736-", "G1737-", "A1738-", "G1739-", "A1740-", "T1741-", "A1742-", "C1744-", 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"-144G", "N160R", "A196V", "I197L", "P210T", "E265A", "T269S", "K309D", "K315R", "N334T", "S336P", "-375A", "-376G", "-377N", "-378S", "T380N", "-381D", "G382T", "-384T", "K393R", "R416S", "N432H"], "gp41": ["M7V", "A21T", "M54L", "V72M", "T133S", "E148D", "L191F", "S210T", "S239T", "R259H", "A267L", "V271L", "R324A", "W326G", "L340F"], "nef": ["K104P", "Q107K", "N161S", "E176G"], "p17": ["L8V", "G10R", "K12E", "D15E", "R30K", "M31L", "E52D", "S66P", "K76R", "F79Y", "R91K", "K127T", "Q130R"], "p24": ["S14P", "V59I", "I91A"], "p6": ["N14D", "G16R", "M17E", "E19Q", "-21Q", "-22K", "-23D", "-26P", "K27-", "Q28-", "E29-", "Q30-", "K31-", "D32-", "K33-", "E34-", "P35-", "P36-"], "p7": ["Q9P"], "pro": ["V13I", "K70R"], "rev": ["S31A", "E57D", "T62S", "C85S", "C89S", "I102V", "S106P"], "tat": ["N12K", "I69L", "I77S"], "vif": ["V7A", "L59I", "R92K", "K93R", "R105Q", "R158K"], "vpr": ["T19A", "Q66H"], "vpu": ["A8V", "L18A", "Y30L", "R31K", "R45K", "E58D"]}, "labels": {"aa": "INT: E11D, M154I, V165I; RT-p51: T35I, I173T, S251N, A286T, D291E, V317A; RT-p66: T35I, I173T, S251N, A286T, D291E, V317A, R448K; gp120: V56I, L97V, K108R, T110A, N111T, T112N, -115S, -116T, -117I, -144G, N160R, A196V, I197L, P210T, E265A, T269S, K309D, K315R, N334T, S336P, -375A, -376G, -377N, -378S, T380N, -381D, G382T, -384T, K393R, R416S, N432H; gp41: M7V, A21T, M54L, V72M, T133S, E148D, L191F, S210T, S239T, R259H, A267L, V271L, R324A, W326G, L340F; nef: K104P, Q107K, N161S, E176G; p17: L8V, G10R, K12E, D15E, R30K, M31L, E52D, S66P, K76R, F79Y, R91K, K127T, Q130R; p24: S14P, V59I, I91A; p6: N14D, G16R, M17E, E19Q, -21Q, -22K, -23D, -26P, K27-, Q28-, E29-, Q30-, K31-, D32-, K33-, E34-, P35-, P36-; p7: Q9P; pro: V13I, K70R; rev: S31A, E57D, T62S, C85S, C89S, I102V, S106P; tat: N12K, I69L, I77S; vif: V7A, L59I, R92K, K93R, R105Q, R158K; vpr: T19A, Q66H; vpu: A8V, L18A, Y30L, R31K, R45K, E58D"}}}, {"name": "JN248352", "node_attrs": {"div": 0.17070999999999997, "accession": "JN248352", "clade_membership": {"value": "CRF15_01B"}, "country": {"value": "TH"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05TH637314"}, "LANL_subtype": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A380T", "T570C", "A585G", "C586T", "G597A", "C710T", "A749T", "A887G", "A914G", "T992G", "C1098G", "C1118T", "A1464C", "C1610T", "G1671A", "C1693T", "C1721T", "-1743C", "-1752C", "-1753T", "-1755G", "-1781C", "G2428A", "A2431G", "C2488T", "A2508C", "G2530A", "A2593G", "G2629A", "G2630A", "G2682A", "A2699G", "G2921A", "A2956G", "G3409A", "A3447G", "A3727T", "A3835G", "A3961G", "C4009T", "C4043T", "A4228G", "T4234A", "A4246G", "A4417G", "A4475G", "T4537C", "T4702C", "C4800T", "C4826A", "A4916T", "A4988C", "T5062G", "G5087A", "T5147A", "G5179A", "A5247G", "C5250A", "C5445A", "G5448C", "A5463T", "T5604-", "G5605-", "T5606-", "A5611T", "G5619A", "A5655C", "T5696A", "T5731A", "A5748T", "T5851G", "T5884G", "C5917T", "A5955C", "C6004T", "G6029A", "A6132G", "T6160C", "C6183A", "A6192G", "-6198A", "-6200G", "-6201G", "-6202A", "-6203G", "-6204G", "-6205A", "-6206G", "-6207G", "-6208A", "-6209C", "-6211A", "-6213A", "-6214G", "A6219G", "G6225A", "-6278C", "-6279A", "A6281-", "A6282-", "T6299A", "A6302G", "A6324G", "G6403A", "A6449C", "G6569A", "A6584C", "A6593G", "G6594A", "C6595A", "A6596G", "C6603A", "A6604T", "G6605A", "G6647A", "A6653G", "C6660T", "A6668C", "A6695C", "G6732A", "T6735A", "G6774A", "A6791G", "-6833A", "G6848A", "G6880A", "T6888G", "A6913G", "A6926G", "C6935A", "-6956T", "-6957G", "T6958G", "A6962G", "-6968A", "-6970T", "-6974A", "-6983A", "-6984C", "-6985A", "-6986G", "-6988A", "C7005T", "T7009A", "A7010C", "G7015A", "G7101A", "C7107T", "A7151G", "A7163C", "C7170T", "G7190A", "C7463A", "C7489T", "C7529T", "A7604G", "T7622A", "C7625A", "C7702T", "A7747G", "C7801A", "A7847G", "G7939T", "C8005T", "A8011C", "C8120A", "G8130A", "A8151G", "T8172A", "C8196T", "A8227T", "G8375A", "T8504G", "G8508A", "G8534A", "T8584A", "C8640A", "A8642G", "A8656G", "T8675C", "A8739G", "T8756C", "A8793G", "T8810G", "A8822G", "T8887G", "C8906T"], "INT": ["P90S", "I234V"], "RT-p51": ["E138A", "M178I", "V179I", "G196E", "I202V", "V276I"], "RT-p66": ["E138A", "M178I", "V179I", "G196E", "I202V", "V276I", "K451R"], "gp120": ["D34A", "E59K", "K93R", "N109D", "T110N", "N113S", "-115N", "-116V", "-117G", "-118G", "-119L", "-120K", "-121M", "E122G", "G124E", "-142Q", "K143D", "Y149N", "T150A", "E157G", "K199Q", "E239K", "I244L", "S247E", "N248D", "T250N", "D251N", "E265K", "N267D", "T269I", "N272H", "I281L", "A291T", "T292E", "G293N", "D294I", "S307N", "T313A", "E326K", "V332I", "M345R", "N358D", "Q361K", "N368P", "N369W", "-370N", "-371D", "-372T", "-373S", "-375E", "-381T", "-384I", "I386L", "R416K", "S418L", "N433D", "T437P", "T439I", "D446N"], "gp41": ["T101A", "S107T", "L108M", "N166K", "I182V", "Q212H", "S239N", "L273I", "R276H", "K283R", "L290Q", "T298I"], "nef": ["D54E", "V56I", "F81Y", "L100M", "K105R", "I133V", "R151G", "D156E", "M182R"], "p1": ["G14R"], "p17": ["F79H", "T84V", "V88I"], "p2": ["N9H", "M14L"], "p24": ["H87Q", "P123A"], "p6": ["P5L", "M17S", "K18L", "E19V", "E20-", "P24-", "P25-", "E34D"], "rev": ["Y28F", "R53C", "I55L", "T91N"], "tat": ["K24N", "K29N"], "vif": ["F39S", "H80Q", "Q110H", "E134D", "I159R"], "vpr": ["Y15N", "N48S", "T49N"], "vpu": ["T2S", "L42I", "R47S", "L82V"]}, "labels": {"aa": "INT: P90S, I234V; RT-p51: E138A, M178I, V179I, G196E, I202V, V276I; RT-p66: E138A, M178I, V179I, G196E, I202V, V276I, K451R; gp120: D34A, E59K, K93R, N109D, T110N, N113S, -115N, -116V, -117G, -118G, -119L, -120K, -121M, E122G, G124E, -142Q, K143D, Y149N, T150A, E157G, K199Q, E239K, I244L, S247E, N248D, T250N, D251N, E265K, N267D, T269I, N272H, I281L, A291T, T292E, G293N, D294I, S307N, T313A, E326K, V332I, M345R, N358D, Q361K, N368P, N369W, -370N, -371D, -372T, -373S, -375E, -381T, -384I, I386L, R416K, S418L, N433D, T437P, T439I, D446N; gp41: T101A, S107T, L108M, N166K, I182V, Q212H, S239N, L273I, R276H, K283R, L290Q, T298I; nef: D54E, V56I, F81Y, L100M, K105R, I133V, R151G, D156E, M182R; p1: G14R; p17: F79H, T84V, V88I; p2: N9H, M14L; p24: H87Q, P123A; p6: P5L, M17S, K18L, E19V, E20-, P24-, P25-, E34D; rev: Y28F, R53C, I55L, T91N; tat: K24N, K29N; vif: F39S, H80Q, Q110H, E134D, I159R; vpr: Y15N, N48S, T49N; vpu: T2S, L42I, R47S, L82V"}}}]}, {"name": "CRF15_01B_NODE_0000003", "node_attrs": {"div": 0.14829999999999996, "clade_membership": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C467T", "T479A", "C596T", "A606G", "G612A", "T662G", "C668T", "G712A", "C713A", "A714-", "A715-", "A716-", "G803A", "A899G", "C917T", "A1074G", "T1229C", "C1331T", "C1440A", "T1451G", "G1477A", "G1586A", "C1693T", "A1776C", "G1963A", "G2311A", "A2413G", "A2422G", "C2694T", "G2707A", "C2708T", "G3001A", "G3019A", "G3097A", "C3140T", "C3160A", "A3199G", "C3252T", "T3346C", "A3520G", "T3535G", "A3907G", "T4579C", "G4677A", "A4692G", "A4696G", "T4702G", "T4706C", "G4736A", "T4754C", "A4865C", "G4900A", "G5545A", "A5587G", "T5731A", "G5747C", "T5851G", "T5884C", "T6100C", "-6175G", "A6180C", "-6211T", "C6238T", "A6311T", "C6318A", "C6337-", "G6349A", "C6375A", "A6481G", "C6545T", "T6643C", "A6695C", "C6708A", "C6713A", "A6715C", "G6716A", "A6728C", "C6729A", "A6730T", "A6801T", "G6806T", "A6834-", "C7008A", "C7127A", "T7150A", "T7159C", "C7174T", "G7441A", "G7589A", "G7640A", "T7642C", "G7712C", "A7796T", "G8036T", "C8037T", "T8094G", "C8103T", "T8182C", "G8388A", "A8407G", "T8585C", "T8675C", "C8684T", "C8702T", "C8789T", "A8819G", "A8859C", "T8860A", "T8903C", "G8904T", "T9179A", "T9180G"], "RT-p51": ["T200I", "T386I"], "RT-p66": ["T200I", "T386I", "H480Q"], "gp120": ["-107K", "N109A", "I153L", "T174K", "R287-", "A288T", "T292-", "Q316L", "T318S", "N327-", "-328N", "-384N", "T385-", "L425I", "N433E"], "gp41": ["A96T", "D113N", "E137Q", "T165S", "A245F", "I264S", "A267V"], "nef": ["V16I", "Q22R", "I173Q", "A188S"], "p17": ["R91G", "E93K", "N109K", "S126K", "K127-"], "p2": ["Q6K", "N9Q"], "p24": ["I115V"], "p6": ["P5L", "T21I", "K33Q"], "p7": ["G4D"], "rev": ["Y28F", "S31A", "T62S", "C63F", "H82K"], "tat": ["G57R", "K71E", "I77S"], "vif": ["K36E", "K37R", "F39C"], "vpu": ["L42I", "R47A", "L82V"]}, "labels": {"aa": "RT-p51: T200I, T386I; RT-p66: T200I, T386I, H480Q; gp120: -107K, N109A, I153L, T174K, R287-, A288T, T292-, Q316L, T318S, N327-, -328N, -384N, T385-, L425I, N433E; gp41: A96T, D113N, E137Q, T165S, A245F, I264S, A267V; nef: V16I, Q22R, I173Q, A188S; p17: R91G, E93K, N109K, S126K, K127-; p2: Q6K, N9Q; p24: I115V; p6: P5L, T21I, K33Q; p7: G4D; rev: Y28F, S31A, T62S, C63F, H82K; tat: G57R, K71E, I77S; vif: K36E, K37R, F39C; vpu: L42I, R47A, L82V"}}, "children": [{"name": "AF529573", "node_attrs": {"div": 0.17111999999999997, "accession": "AF529573", "clade_membership": {"value": "CRF15_01B"}, "country": {"value": "TH"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02TH_OUR1332"}, "LANL_subtype": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A314T", "G378T", "G424A", "G425T", "A426T", "G428A", "C471A", "T571A", "A619C", "A645T", "A660C", "G706A", "G740A", "C845A", "C851T", "A1017C", "G1022A", "T1052C", "A1089G", "C1098G", "A1253T", "C1280T", "A1339G", "A1350G", "A1367G", "G1640C", "A1643G", "A1656-", "A1657-", "C1658-", "A1709G", "A1719G", "A1736G", "A1738G", "A1742G", "C1744-", "C1745A", "-1746A", "-1747C", "-1748T", "T1749C", "C1751T", "C1753T", "T1756C", "T1795C", "A1841G", "G1855A", "G1968A", "A2012G", "G2065A", "A2126G", "A2127C", "C2296T", "A2386G", "T2392A", "G2430C", "G2463A", "A2560G", "A2566G", "A2579G", "G2580C", "G2629T", "G2630A", "C2635A", "G2909C", "A2915G", "A2969G", "T3118A", "C3128A", "A3145G", "G3250A", "A3280G", "T3303C", "A3361G", "A3397C", "G3398A", "G3435A", "C3475T", "G3538A", "G3631A", "G3644A", "C3652T", "A3659G", "A3682T", "G3685A", "G3686A", "C3712T", "T3793G", "C3843T", "A3937G", "A4105G", "T4129A", "A4333G", "A4498G", "T4510C", "A4650C", "G4673A", "G4829A", "A4864G", "G4893A", "C4899A", "C4937T", "G4951A", "C4977T", "T4991C", "A5038G", "A5124G", "C5132T", "A5154C", "C5168T", "T5182C", "C5234G", "A5345G", "C5425A", "A5581C", "C5612A", "A5644G", "G5692C", "T5695A", "A5702G", "G5729A", "T5808G", "G5845A", "A5907G", "A6030G", "A6031G", "G6079A", "A6130G", "C6143A", "G6167A", "-6196T", "-6198C", "-6203G", "-6204C", "-6205T", "-6206A", "-6207C", "-6208T", "T6210A", "G6222T", "A6267G", "G6277A", "-6278A", "-6279A", "-6280G", "A6281-", "A6282-", "A6283-", "A6304G", "-6337T", "A6425G", "G6451A", "A6465G", "T6472A", "G6605A", "C6643A", "A6734G", "T6735A", "C6766T", "A6786G", "G6821A", "A6937G", "-6956A", "-6957A", "G6963C", "-6968T", "-6970G", "-6986A", "A6989G", "A7013T", "G7040A", "A7090G", "A7102C", "A7155G", "G7197A", "T7250C", "C7463A", "T7579C", "T7624C", "G7628A", "T7647C", "C7658G", "A7689G", "A7726G", "A7729G", "C7742T", "T7913G", "C7926T", "A7957G", "A7962G", "C8033A", "T8047C", "A8050G", "G8055A", "A8069C", "G8070T", "C8182A", "A8188G", "G8219A", "G8329A", "T8332C", "T8366C", "C8382T", "G8404A", "T8495C", "C8500A", "T8501G", "A8503C", "A8517G", "A8531T", "A8536G", "A8617G", "C8640A", "A8656G", "G8666A", "A8678G", "T8701A", "A8744G", "G8864T", "C8867T", "A8873C", "C8907T", "T8939C", "T8972A", "A8977G", "A9026G", "T9078C", "A9101G", "A9135G"], "INT": ["D6E", "A23V"], "RT-p51": ["K11A", "G112A", "S123N", "S162A", "M178I", "V179I", "A272P", "I274V", "I292V", "P345T", "M403T", "V435I"], "RT-p66": ["K11A", "G112A", "S123N", "S162A", "M178I", "V179I", "A272P", "I274V", "I292V", "P345T", "M403T", "V435I", "S447N", "V517I", "I522V", "E529D", "V531I"], "gp120": ["K18R", "E59G", "L97I", "D105N", "-115T", "-116A", "-117T", "-118N", "-120I", "-121M", "G123V", "K138R", "T191A", "K204R", "N206K", "D251N", "I281L", "P285Q", "-287S", "-292H", "N311S", "E323K", "-370T", "-371T", "-372W", "-379D", "-381T", "-385N", "T387S", "V396I", "R416S", "N434S", "R448K"], "gp41": ["M115T", "Q119E", "K129R", "L204V", "T208I", "E220G", "L244I", "S251N", "S256L", "A306T"], "nef": ["P14S", "A53E", "D54A", "E63D", "E65G", "K92R", "L100I", "K105R", "F120Y", "E174D", "E177D"], "p1": ["N9-"], "p17": ["A15S", "R30N", "M31L", "L46I", "F79Y", "K95T", "I104L", "K109Q", "S124N"], "p24": ["M96L", "S120G", "P123A", "K203R", "T207A"], "p6": ["N14D", "E20G", "I21M", "T22-", "P25-", "P35N", "V39A"], "pro": ["I15V", "R57K", "I72V", "M89I"], "rev": ["T37A", "S62N", "S67P", "T68A", "Q74P", "S112T", "T114A"], "tat": ["Q17K", "I69L", "P73S", "D83G", "K85E"], "vif": ["N22H", "M29I", "N93S", "A103T", "R105K", "R122K", "R131C", "K151R", "I180V", "N190H"], "vpr": ["D7G", "P10S", "E17A", "Q44E"], "vpu": ["T2K", "I13V", "E29Q", "Y30I", "K32R", "R41K", "A47T", "D80N"]}, "labels": {"aa": "INT: D6E, A23V; RT-p51: K11A, G112A, S123N, S162A, M178I, V179I, A272P, I274V, I292V, P345T, M403T, V435I; RT-p66: K11A, G112A, S123N, S162A, M178I, V179I, A272P, I274V, I292V, P345T, M403T, V435I, S447N, V517I, I522V, E529D, V531I; gp120: K18R, E59G, L97I, D105N, -115T, -116A, -117T, -118N, -120I, -121M, G123V, K138R, T191A, K204R, N206K, D251N, I281L, P285Q, -287S, -292H, N311S, E323K, -370T, -371T, -372W, -379D, -381T, -385N, T387S, V396I, R416S, N434S, R448K; gp41: M115T, Q119E, K129R, L204V, T208I, E220G, L244I, S251N, S256L, A306T; nef: P14S, A53E, D54A, E63D, E65G, K92R, L100I, K105R, F120Y, E174D, E177D; p1: N9-; p17: A15S, R30N, M31L, L46I, F79Y, K95T, I104L, K109Q, S124N; p24: M96L, S120G, P123A, K203R, T207A; p6: N14D, E20G, I21M, T22-, P25-, P35N, V39A; pro: I15V, R57K, I72V, M89I; rev: T37A, S62N, S67P, T68A, Q74P, S112T, T114A; tat: Q17K, I69L, P73S, D83G, K85E; vif: N22H, M29I, N93S, A103T, R105K, R122K, R131C, K151R, I180V, N190H; vpr: D7G, P10S, E17A, Q44E; vpu: T2K, I13V, E29Q, Y30I, K32R, R41K, A47T, D80N"}}}, {"name": "AF529572", "node_attrs": {"div": 0.16545999999999997, "accession": "AF529572", "clade_membership": {"value": "CRF15_01B"}, "country": {"value": "TH"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02TH_OUR1331"}, "LANL_subtype": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G495T", "A509G", "C535A", "C583T", "A642C", "A643C", "A647G", "C897T", "A959G", "T992G", "A1176G", "G1192A", "A1263T", "C1295T", "A1499G", "A1525G", "A1644C", "-1743A", "-1752T", "A1781G", "C1783A", "T1784G", "C1785A", "C1786A", "T1895A", "A1926G", "T1987A", "A2018T", "A2128G", "C2236T", "G2380A", "T2499C", "G2548A", "C2596T", "A2677G", "A2699G", "A2808G", "A2998G", "A3027G", "A3076T", "G3085A", "A3120T", "A3268G", "G3409A", "C3688A", "C3826T", "T3922C", "G4182A", "G4268A", "A4420C", "A4423T", "G4765A", "G4774A", "T4776A", "A4781C", "G4805A", "A4860G", "T5152C", "A5185G", "T5264A", "G5312A", "T5314C", "A5355T", "A5357G", "-5603A", "G5620C", "T5636C", "T5696A", "G5699A", "C5707T", "A5746G", "G5824A", "A5935C", "T5956G", "C5980T", "G6020A", "G6065A", "G6149A", "A6152C", "A6159C", "C6163T", "A6174G", "T6184C", "A6188-", "C6189-", "C6190-", "A6191-", "A6192-", "T6193-", "A6194-", "G6195-", "A6197-", "T6199-", 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K215N, Q216H; RT-p51: I135T, I202V, K238R, K311R, Y342F; RT-p66: I135T, I202V, K238R, K311R, Y342F; gp120: D34E, V56I, D71N, V99I, T100P, N102T, K107R, T112I, N113T, S114I, G124R, K140E, D157N, D159G, N160T, T161-, S236G, E265V, N267D, T269I, G284-, P285-, G286-, T288-, W289-, Y290-, A291-, G293-, E294-, L305V, T308A, K309N, S318Y, V332I, G352R, N369G, -374T, -375I, -376T, -377Y, -379T, -381E, N432K, K472H; gp41: M54L, V72I, N105S, L108H, N109A, K129N, I182V, Q229R, R277S, L290I, G293S, V321I, A322T, A343F; nef: K21R, A27T, C55S, E59K, E152D, V153A, I194T, F202Y; p1: I5L; p17: A54S, T67N, A83V, K103P, I104M; p24: H87Q, S149G, R154K, T178S; p6: P24S, P25L, P35Q, P36K; p7: K20R; pro: L33I, K43R, T74S; rev: I55L, F63L, V108D, G111E, S112P; vif: G60E, R63K, L64I, R92G, R105Q, M189T; vpr: W54R, V70I, I84L; vpu: E5Q, V10A, R31K, D73N"}}}]}]}, {"name": "CRF15_01B_NODE_0000004", "node_attrs": {"div": 0.13673999999999997, "clade_membership": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T771C", "A5581G", "T6457C", "G6458A", "A6604G", "G6725A", "-6830G", "-6831G", "-6832G", "-6833A", "A6836-", "A6837-", "A7155C", "C8196T", "A8518G"], "gp120": ["D202N", "A291T", "-326G"], "gp41": ["T298I"], "p24": ["S14P"], "p6": ["P24L"], "tat": ["I69V"]}, "labels": {"aa": "gp120: D202N, A291T, -326G; gp41: T298I; p24: S14P; p6: P24L; tat: I69V"}}, "children": [{"name": "CRF15_01B_NODE_0000005", "node_attrs": {"div": 0.14060999999999998, "clade_membership": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G458A", "G579A", "A1253G", "A1670G", "-1752C", "G1778T", "G1779-", "A1780-", "A1781-", "G2023A", "A2969G", "A3279G", "G3685A", "G5699A", "C5917T", "C6183A", "-6198A", "-6203A", "-6205C", "-6206A", "A6232G", "C6262A", "C6318A", "A6734C", "T6735A", "A6798G", "-6956A", "-6968T", "-6970G", "G6999A", "C7087T", "A7088G", "A7089C", "T7159C", "A7620G", "A7676G", "T7931-", "C7932T", "G8130A", "A8288T", "C8415G", "A8859C", "G8864T", "A8873T", "G8875A"], "RT-p51": ["I292V", "K395R"], "RT-p66": ["I292V", "K395R"], "gp120": ["-115S", "E294Q", "-384D", "K412A"], "gp41": ["K106R", "I329F"], "nef": ["P25A", "E174D", "E177D", "R178K"], "p17": ["V82I"], "p24": ["E79D"], "p6": ["K33N", "E34P", "P36-"], "vpu": ["R31K"]}, "labels": {"aa": "RT-p51: I292V, K395R; RT-p66: I292V, K395R; gp120: -115S, E294Q, -384D, K412A; gp41: K106R, I329F; nef: P25A, E174D, E177D, R178K; p17: V82I; p24: E79D; p6: K33N, E34P, P36-; vpu: R31K"}}, "children": [{"name": "AF530576", "node_attrs": {"div": 0.16940999999999998, "accession": "AF530576", "clade_membership": {"value": "CRF15_01B"}, "country": {"value": "TH"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99TH_R2399"}, "LANL_subtype": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A136T", "G139A", "T141G", "C150-", "C151-", "A152-", "C153-", "T154-", "-167G", "A171G", "C173T", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "C193T", "T201C", "A209G", "A215-", "A216-", "A286G", "G428A", "C471G", "T525C", "T531C", "C535T", "T536G", "C558G", "A562G", "T575C", "C587T", "A645T", "T662G", "T774G", "C830T", "G866A", "T890C", "A968T", "G1016A", "T1143C", "A1217G", "T1229C", "G1298A", "G1313A", "C1322T", "T1329G", "A1339G", "A1350C", "C1351A", "T1362C", "A1461G", "G1493A", "C1615T", "G1673A", "A1718G", "-1746T", "-1747C", "-1748C", "C1750T", "C1751A", "C1755-", "T1756-", "G1757-", "C1853T", "G1855A", "A1867G", "A2127C", "G2155A", "A2184G", "A2344G", "G2380A", "A2808G", "A2962G", "A2974G", "C2975A", "T2983A", "T3034C", "G3037A", "A3200G", "A3280G", "G3491A", "T3496C", "T3505A", "C3541T", "A3637C", "A3684G", "T3857C", "T3898C", "A3910G", "C3977T", "G4182A", "C4201T", "G4243A", "A4273G", "A4376G", "A4384G", "A4552G", "A4570C", "A4696G", "A4733G", "G4736A", "A4790C", "C4826A", "A4865T", "C4939G", "C4977A", "G5075A", "A5159G", "A5246C", "T5293C", "A5355C", "A5357G", 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"A6322G", "T6325G", "A6333G", "C6336G", "C6337T", "G6339A", "C6340T", "G6346A", "G6349A", "A6353C", "C6361T", "C6364T", "G6392A", "A6465C", "G6466A", "A6471G", "G6572A", "A6580G", "A6615G", "A6686G", "-6697G", "A6703-", "G6714A", "A6715C", "T6722C", "G6731A", "C6752A", "A6753G", "A6765C", "G6771A", "T6772A", "C6790T", "A6797G", "C6807T", "-6835T", "-6836G", "-6837A", "-6838T", "G6848A", "C6850T", "T6856G", "T6885C", "C6935A", "-6957C", "-6971G", "-6972A", "-6973T", "-6974G", "-6975G", "-6976T", "A6987-", "T6988-", "A6989-", "A6990-", "T6991-", "C7008A", "G7055C", "A7065G", "A7095C", "G7101A", "C7127A", "A7152C", "T7153C", "C7155A", "C7162A", "C7164A", "A7268C", "G7309A", "C7320T", "T7433C", "C7463A", "A7553C", "A7604G", "G7627A", "G7628A", "C7645T", "C7658G", "G7660T", "G7677C", "A7689G", "C7801A", "C7825T", "C7843T", "G7846A", "G7862A", "-7931A", "G7977A", "A8011C", "G8019C", "A8029T", "A8032T", "A8119G", "C8120A", "T8122C", "G8145T", "C8146T", "T8155C", "T8164C", "T8171C", "C8213T", 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"E401Q", "K404R", "Q414P", "R416K", "L425I", "T436K", "T437N", "K472Q"], "gp41": ["A6V", "I84L", "T101A", "Q119D", "S125A", "K129R", "N166K", "V187I", "S210I", "G225E", "S239T", "L242F", "L273I", "G281V", "L304F", "D305N", "A310T"], "nef": ["S8R", "I10T", "E18D", "I20L", "E65G", "G83A", "K94Q", "Y135F", "P150T", "N157S", "M168L", "S169N", "I173Q", "E197D"], "p17": ["M31I", "L46V", "S66P", "T67M", "L75V", "K76R", "I104L", "N109K"], "p2": ["N9H", "-11A", "-12N", "I13V"], "p24": ["L15V", "S200A", "K203R", "T207Q"], "p7": ["T50I"], "rev": ["S31A", "I55L", "E57D", "S61C", "T62S", "T91D", "S92P", "R99S", "P100S", "S103P", "S106P", "V108A"], "tat": ["A21E", "P75S", "I77S"], "vif": ["I31V", "K37R", "H80Q", "S118C", "R131S"], "vpr": ["T19A", "N48H", "I84L", "G89D"], "vpu": ["L16I", "E63D"]}, "labels": {"aa": "INT: R136Q, I201V, I203M; RT-p51: K11T, K30R, K238R, P294T, T369A; RT-p66: K11T, K30R, K238R, P294T, T369A, V466I, E514D, K530R; gp120: E19D, T21D, E59G, D71N, L106A, -107T, N111S, S114G, -116I, -117T, -120I, -121N, E122S, -123T, G124D, N128S, I133M, S136E, I137V, K138G, T139D, K140R, V141K, -142Q, K143N, D144V, Y145S, I156M, D157E, N160S, T161S, S162N, N167H, V180I, K204T, N206S, E240K, K254R, S278G, I281M, R287H, Y290H, G293R, Q300R, N304T, S306K, K315G, T318V, -328D, V332I, N334K, V344A, Q361K, -368T, -370S, -371T, -372W, -373D, -374G, -375T, -376T, -377E, T380-, T385N, E401Q, K404R, Q414P, R416K, L425I, T436K, T437N, K472Q; gp41: A6V, I84L, T101A, Q119D, S125A, K129R, N166K, V187I, S210I, G225E, S239T, L242F, L273I, G281V, L304F, D305N, A310T; nef: S8R, I10T, E18D, I20L, E65G, G83A, K94Q, Y135F, P150T, N157S, M168L, S169N, I173Q, E197D; p17: M31I, L46V, S66P, T67M, L75V, K76R, I104L, N109K; p2: N9H, -11A, -12N, I13V; p24: L15V, S200A, K203R, T207Q; p7: T50I; rev: S31A, I55L, E57D, S61C, T62S, T91D, S92P, R99S, P100S, S103P, S106P, V108A; tat: A21E, P75S, I77S; vif: I31V, K37R, H80Q, S118C, R131S; vpr: T19A, N48H, I84L, G89D; vpu: L16I, E63D"}}}, {"name": "DQ354120", "node_attrs": {"div": 0.16099999999999998, "accession": "DQ354120", "clade_membership": {"value": "CRF15_01B"}, "country": {"value": "TH"}, "date": {"value": 1996.0}, "Strain_name": {"value": "M169"}, "LANL_subtype": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G361C", "A513C", "A557G", "C583T", "A619G", "A647G", "G696A", "G803A", "G821A", "T827C", "T858C", "A944T", "A968C", "C1040T", "G1090A", "G1139A", "A1176G", "T1182C", "A1359T", "A1412G", "A1442C", "A1448G", "G1452A", "G1586A", "C1610T", "C1615A", "A1656C", "A1691G", "C1741T", "A1742G", "C1753T", "T1756C", "T1792C", "T2035C", "G2215A", "G2222A", "T2425C", "C2485T", "A2592G", "G2682A", "A2710G", "G2909C", "A2915G", "C2968A", "G2984A", "A2986G", "A3007T", "C3129A", "A3218G", "C3285T", "T3358C", "A3502C", "T3517C", "G3538A", "A3866G", "A3868G", "C4076A", "G4078A", "T4129G", "T4135C", "A4333G", "A4492C", "G4616A", "T4667C", "G4677A", "T4702C", "C4728A", "T4776A", "C4826T", "A4863C", "G4870A", "T4883C", "C4937A", "C5149T", "G5179A", "A5247C", "C5306T", "G5382C", "C5482T", "T5636C", "C5658T", "T5659G", "T5660C", "T5688A", "A5689T", "T5695G", "G5711A", "A5760G", "T5851C", "T5878C", "G5963A", "T5964C", "T6151C", "A6173G", "-6175A", "A6180C", "A6192G", "-6196T", "-6200A", "-6201C", "-6202T", "-6204C", "-6207G", "-6208T", "T6210G", "-6211T", "A6212C", "T6213C", "A6214G", "A6215C", "G6222A", "G6224A", "A6248G", "T6250C", "G6261C", "A6265G", "A6268T", "A6332G", "A6354G", "C6412A", "G6430T", "C6446A", "A6465G", "T6541C", "C6607T", "G6617A", "A6639T", "A6695C", "C6708A", "C6758T", "C6767A", "T6772C", "A6803G", "G6806A", "-6835C", "A6859C", "-6957A", "A6960C", "A6965G", "-6986A", "A6989T", "C7014G", "G7040A", "A7095T", "C7156G", "A7160-", "A7161-", "C7162-", "G7182C", "A7269G", "G7291A", "G7440A", "C7486T", "C7489T", "T7622A", "T7626A", "G7627T", "G7633C", "G7640A", "G7677A", "T7775C", "G7790A", "A7791G", "A7796T", "A7818G", "G7835A", "A7847G", "C7926-", "C7927-", "C7928-", "C7929-", "T7930-", "A7935C", "C7937A", "A7938C", "G7939C", "C7951A", "G8017C", "A8050G", "G8052A", "C8080A", "G8137T", "A8143G", "A8248G", "G8255A", "A8260T", "A8282G", "G8335A", "C8336G", "G8388A", "A8407G", "G8421A", "T8505A", "T8582A", "T8584A", "A8617G", "A8657G", "A8717C", "A8917C", "T8923G", "C8928A"], "INT": ["I31V", "L101I", "V281M"], "RT-p51": ["E43K", "K166R", "G196E", "A272P", "I274V", "D291E", "E297K", "P345Q", "I375V", "T397I"], "RT-p66": ["E43K", "K166R", "G196E", "A272P", "I274V", "D291E", "E297K", "P345Q", "I375V", "T397I"], "gp120": ["V37T", "-107E", "N109A", "T110N", "N113S", "-116P", "-117L", "-123E", "G124R", "N132D", "S136T", "I137M", "K138N", "N160D", "N167S", "L198I", "K204R", "V255I", "E262V", "I281L", "P285Q", "H302Y", "L305I", "K315R", "I317V", "Q335H", "-368N", "N369G", "-374T", "-375S", "-376A", "-377W", "-379Y", "-381T", "-382E", "-383N", "T387R", "V396I", "Q414L", "N434T", "T437-", "G443A", "K472R"], "gp41": ["R46K", "M54L", "S107T", "L108H", "N109D", "E110D", "D113N", "S125D", "D163S", "T165S", "K172R", "V178I", "I182V", "T208I", "P209-", "S210-", "H211P", "Q212T", "Q213H", "R250Q", "V318I", "R327G", "L345V"], "nef": ["V16I", "K21R", "Q22R", "A27T", "C55S", "Q61H", "F81Y", "K92R", "Q125H", "I173L", "K192T", "I194R"], "p1": ["N9H"], "p17": ["S9T", "I60L", "A83V", "K95R", "I104M", "G121S"], "p2": ["A7H", "Q8T"], "p24": ["E71D", "S120N", "S149G", "T210S"], "p6": ["T21M", "L38S"], "p7": ["T50N"], "rev": ["E57Q", "T68A", "L78I", "V97L", "R99G"], "tat": ["E2D", "P73S", "N80G", "P81N"], "vif": ["F39S", "H48N", "L64I", "N93Q", "S95N", "D117E", "T188I"], "vpr": ["N48T", "A93P"], "vpu": ["V10A", "L18A", "I28L", "Y30V", "R35K"]}, "labels": {"aa": "INT: I31V, L101I, V281M; RT-p51: E43K, K166R, G196E, A272P, I274V, D291E, E297K, P345Q, I375V, T397I; RT-p66: E43K, K166R, G196E, A272P, I274V, D291E, E297K, P345Q, I375V, T397I; gp120: V37T, -107E, N109A, T110N, N113S, -116P, -117L, -123E, G124R, N132D, S136T, I137M, K138N, N160D, N167S, L198I, K204R, V255I, E262V, I281L, P285Q, H302Y, L305I, K315R, I317V, Q335H, -368N, N369G, -374T, -375S, -376A, -377W, -379Y, -381T, -382E, -383N, T387R, V396I, Q414L, N434T, T437-, G443A, K472R; gp41: R46K, M54L, S107T, L108H, N109D, E110D, D113N, S125D, D163S, T165S, K172R, V178I, I182V, T208I, P209-, S210-, H211P, Q212T, Q213H, R250Q, V318I, R327G, L345V; nef: V16I, K21R, Q22R, A27T, C55S, Q61H, F81Y, K92R, Q125H, I173L, K192T, I194R; p1: N9H; p17: S9T, I60L, A83V, K95R, I104M, G121S; p2: A7H, Q8T; p24: E71D, S120N, S149G, T210S; p6: T21M, L38S; p7: T50N; rev: E57Q, T68A, L78I, V97L, R99G; tat: E2D, P73S, N80G, P81N; vif: F39S, H48N, L64I, N93Q, S95N, D117E, T188I; vpr: N48T, A93P; vpu: V10A, L18A, I28L, Y30V, R35K"}}}]}, {"name": "CRF15_01B_NODE_0000006", "node_attrs": {"div": 0.13968999999999998, "clade_membership": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G425A", "G428A", "G821A", "-1752T", "C1783A", "T1986C", "C2353T", "A2566G", "A2808G", "G3001A", "A4864G", "C5250A", "C5653A", "C5707T", "G5711A", "C5866A", "T5878C", "T5884C", "C6025A", "-6175G", "-6211G", "A6311G", "G6806A", "A7005G", "A7032G", "T7579C", "A7885G", "T8182C", "G8349A", "G8404A", "T8505A", "G8558A", "A8981G"], "RT-p51": ["K238R"], "RT-p66": ["K238R"], "gp120": ["M126I", "I153V", "-371T", "K393R", "N434T"], "gp41": ["M54L", "L340F"], "nef": ["G3S"], "p17": ["M31L"], "p2": ["Q6H"], "p6": ["P25L", "P35H"], "pro": ["L63P"], "rev": ["H82S", "S112P"], "vpr": ["T49N"], "vpu": ["L16I", "R35K"]}, "labels": {"aa": "RT-p51: K238R; RT-p66: K238R; gp120: M126I, I153V, -371T, K393R, N434T; gp41: M54L, L340F; nef: G3S; p17: M31L; p2: Q6H; p6: P25L, P35H; pro: L63P; rev: H82S, S112P; vpr: T49N; vpu: L16I, R35K"}}, "children": [{"name": "AF516184", "node_attrs": {"div": 0.17280999999999996, "accession": "AF516184", "clade_membership": {"value": "CRF15_01B"}, "country": {"value": "TH"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99TH_MU2079"}, "LANL_subtype": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C134T", "A136C", "A138-", "G139-", "A140-", "T141-", "C142-", "A152C", "C153T", "A168-", "T200C", "G202T", "T213C", "T214G", "-217A", "A303T", "G407A", "A419G", "G424A", "A426C", "T435C", "C471A", "G480A", "A492T", "A516C", "T571A", "C602A", "C603A", "A605C", "A644G", "G667A", "A692G", "A715C", "A725T", "T774G", "G966A", "G977A", "A1074G", "C1098G", "C1280T", "C1295A", "T1303C", "A1350T", "A1359T", "C1385T", "G1418A", "A1442T", "C1444T", "T1451G", "G1452A", "A1461G", "A1544G", "A1587G", "A1642G", "A1644C", "A1656-", "A1657-", "C1658-", "A1701T", "A1718G", "C1753T", "A1777G", "C1785A", "C1831T", "G1835A", "A1874C", "A1889C", "G1912C", "A1918G", "A1927C", "G2074A", "A2075C", "C2113A", "G2273A", "A2344G", "T2365G", "A2374G", "A2424T", "C2464T", "G2548A", "A2579T", "T2613A", "A2617G", "G2707A", "A2734G", "A2743G", "G2755A", "A2911G", "A2962G", "C2978T", "A3029G", "T3045C", "A3142G", "T3355A", "C3359T", "T3412C", "A3487G", "T3535A", "G3538A", "T3544G", "A3555G", "G3715A", "G3718A", "A3886G", "A3891G", "A3919G", "A4025G", "G4063A", "G4151A", "T4153G", "G4193T", "A4196G", "T4197A", "C4198T", "G4237T", "G4267A", "G4268A", "A4305C", "A4382T", "A4399T", "A4401C", "A4416C", "A4420C", "A4424-", "T4425-", "T4426-", "A4427T", "A4429C", "A4564G", "T4656C", "T4742C", "G4746C", "G4765A", "G4786A", "C4820T", "C4826T", "A4863G", "C4889A", "C4937A", "C4977T", "G4978A", "G4982T", "A4988T", "A5054C", "G5066A", "T5081G", "A5093G", "A5109G", "A5154G", "A5159C", "T5197A", "G5199A", "C5201-", "A5202-", "T5203-", "C5207T", "A5238C", "A5247C", "A5285G", "A5299C", "C5321T", "A5336C", "G5350C", "A5357T", "G5371C", "G5382C", "C5393T", "A5426G", "G5444A", "G5448T", "A5462T", "C5482A", "T5582C", "A5611T", "G5619A", "G5652A", "T5695A", "A5703T", "A5709G", "C5756A", "T5827C", "C5860T", "T5861G", "A5864G", "A5911C", "A5915T", "T5964C", "T5973G", "C5980T", "A6001G", "A6009G", "T6021A", "G6023A", "A6030G", "A6059G", "C6067T", "T6085G", "T6101C", "C6153G", "A6174G", "C6189T", "A6197-", "T6199-", "A6209-", "T6210-", "T6213C", "G6217A", "G6220A", "C6241T", "C6253A", "A6267G", "G6277A", "T6301C", "A6303G", "A6304C", "T6315A", "C6317G", "A6329-", "A6330-", "T6331-", "A6332-", "A6333-", "T6334-", "T6351G", "T6355G", "G6368A", "T6460C", "C6469T", "G6581A", "T6586C", "T6598C", "G6605A", "G6617A", "G6634A", "A6706T", "C6713A", "G6716T", "A6734G", "T6735A", "A6785G", "A6786G", "A6799C", "-6835T", "T6856C", "T6860C", "G6884A", "A6887G", "T6898C", "-6956T", "-6957T", "-6968T", "-6970G", "-6986A", "A6989G", "A6995G", "A7065G", "A7152C", "T7153C", "C7156G", "A7161C", "C7170T", "G7182C", "G7232A", "G7343A", "A7396G", "T7433C", "G7453A", "A7549G", "A7604G", "G7628A", "C7658G", "G7660A", "G7712C", "A7729G", "T7743A", "G7753A", "A7755C", "T7852C", "T7919C", "T7931A", "C7932T", "C7949G", "G7965A", "G7997A", "A8000G", "C8009A", "A8032C", "A8050G", "G8085A", "C8092A", "A8093G", "T8097C", "G8105A", "A8173G", "G8219A", "A8295G", "C8320T", "A8323C", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "G8376-", "G8377-", "A8378-", "G8398A", "A8426G", "T8444G", "T8456C", "A8459C", "C8523G", "A8525G", "A8531C", "G8590A", "C8684T", "T8756C", "A8795T", "A8798T", "G8808A", "A8861G", "T8887A", "A8892C", "A8942T", "T8947A", "G9035A", "T9074G", "T9078C", "T9097G", "C9154G", "G9168T", "C9169G"], "INT": ["N39S", "I84V", "V126M", "G140W", "I141D", "M154I", "V165I", "Q177P", "I203L", "Q209P", "Q214P", "K215N", "I217S", "T218-"], "RT-p51": ["D6E", "V60I", "D110V", "S162C", "I173K", "T312A", "V317A"], "RT-p66": ["D6E", "V60I", "D110V", "S162C", "I173K", "T312A", "V317A", "H480Q", "H483Q", "Q487R"], "gp120": ["S3A", "N4E", "E19D", "T21S", "V37A", "V40G", "N52S", "V56E", "V57I", "E59G", "K69E", "H77Q", "T100S", "-107R", "N109D", "T112I", "S114R", "-115T", "-116I", "-123G", "K138R", "K150S", "V154E", "Q155A", "N159-", "N160-", "I166R", "N167K", "V172I", "V243I", "D251N", "V255I", "A288S", "N311G", "K315N", "S336P", "V344I", "M345V", "-368F", "-370S", "-372W", "-379D", "-381A", "-382G", "-383N", "-384G", "K404R", "N433T", "T439I", "G443A", "V460I"], "gp41": ["A14T", "T101A", "Q119E", "E137Q", "L147Q", "E151A", "F206L", "S210I", "P216A", "G221E", "D232N", "R233G", "R261K", "F263L", "I264V", "L265S", "A268T", "R277S", "A306T", "H331R"], "nef": ["S9-", "I10-", "V11-", "G12-", "R19K", "K39N", "C55S", "Q61E", "E63D", "G83E", "R151S", "E152D", "D156N", "I173M", "M182K", "K184Q", "F202Y"], "p1": ["K4R", "I5L", "N9-"], "p17": ["R30K", "L46I", "G49S", "T53S", "I61L", "F79Y", "H89Q", "Q90N", "S111N", "K127T", "Q130H"], "p2": ["A7V", "Q8T", "-10V", "I13-"], "p24": ["L15V", "E79K", "I115V", "P123A", "V191A", "T207S", "T210S"], "p6": ["T8S", "K33R", "P36T", "S51L"], "p7": ["K41E"], "pro": ["V13I", "T26P", "T31P", "L38F", "K43N", "I93L"], "rev": ["Y23H", "S31A", "T34S", "R50K", "Q51R", "A54E", "T62P", "T68A", "S86N", "I109V"], "tat": ["E2D", "P6L", "Q17R", "S23N", "K24N", "K29I", "L36I", "V69A", "P75S", "I77S", "N80K", "E86K"], "vif": ["I31V", "E54Q", "G60E", "R67K", "N93G", "D101E", "D117E", "R131Y", "R132S", "E134D", "S165R", "N175D", "N190D"], "vpr": ["E2G", "E17G", "T19P", "R32K", "H33-", "P35S", "Y45S", "N48T", "I61V", "Q65H", "Q77H", "G82A", "G89A", "A93P"], "vpu": ["T2S", "Y30I", "K32N", "A50E", "F74L"]}, "labels": {"aa": "INT: N39S, I84V, V126M, G140W, I141D, M154I, V165I, Q177P, I203L, Q209P, Q214P, K215N, I217S, T218-; RT-p51: D6E, V60I, D110V, S162C, I173K, T312A, V317A; RT-p66: D6E, V60I, D110V, S162C, I173K, T312A, V317A, H480Q, H483Q, Q487R; gp120: S3A, N4E, E19D, T21S, V37A, V40G, N52S, V56E, V57I, E59G, K69E, H77Q, T100S, -107R, N109D, T112I, S114R, -115T, -116I, -123G, K138R, K150S, V154E, Q155A, N159-, N160-, I166R, N167K, V172I, V243I, D251N, V255I, A288S, N311G, K315N, S336P, V344I, M345V, -368F, -370S, -372W, -379D, -381A, -382G, -383N, -384G, K404R, N433T, T439I, G443A, V460I; gp41: A14T, T101A, Q119E, E137Q, L147Q, E151A, F206L, S210I, P216A, G221E, D232N, R233G, R261K, F263L, I264V, L265S, A268T, R277S, A306T, H331R; nef: S9-, I10-, V11-, G12-, R19K, K39N, C55S, Q61E, E63D, G83E, R151S, E152D, D156N, I173M, M182K, K184Q, F202Y; p1: K4R, I5L, N9-; p17: R30K, L46I, G49S, T53S, I61L, F79Y, H89Q, Q90N, S111N, K127T, Q130H; p2: A7V, Q8T, -10V, I13-; p24: L15V, E79K, I115V, P123A, V191A, T207S, T210S; p6: T8S, K33R, P36T, S51L; p7: K41E; pro: V13I, T26P, T31P, L38F, K43N, I93L; rev: Y23H, S31A, T34S, R50K, Q51R, A54E, T62P, T68A, S86N, I109V; tat: E2D, P6L, Q17R, S23N, K24N, K29I, L36I, V69A, P75S, I77S, N80K, E86K; vif: I31V, E54Q, G60E, R67K, N93G, D101E, D117E, R131Y, R132S, E134D, S165R, N175D, N190D; vpr: E2G, E17G, T19P, R32K, H33-, P35S, Y45S, N48T, I61V, Q65H, Q77H, G82A, G89A, A93P; vpu: T2S, Y30I, K32N, A50E, F74L"}}}, {"name": "JN248325", "node_attrs": {"div": 0.16529, "accession": "JN248325", "clade_membership": {"value": "CRF15_01B"}, "country": {"value": "TH"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04TH409819"}, "LANL_subtype": {"value": "CRF15_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "A426T", "C496G", "T531C", "A534G", "C558A", "T560C", "A562G", "T572C", "G592A", "G593T", "G597A", "G607A", "A620G", "G654A", "T662G", "G690A", "A752G", "G803A", "G978A", "G1031A", "C1060A", "G1090A", "C1214T", "T1262C", "A1263T", "A1397G", "A1442C", "A1525G", "A1562G", "G1589A", "T1653C", "A1664G", "G1673A", "A1709G", "C1745A", "A1759G", "T1784C", "A1861G", "A2127C", "G2164A", "G2215A", "G2222C", "T2323C", "A2389G", "G2426A", "G2428A", "A2431G", "G2473A", "C2521A", "G2539A", "A2592G", "A2615G", "G2629A", "G2630A", "C2653T", "C2708T", "T2737C", "T2770C", "C2941T", "G2951A", "C2968A", "A2969G", "A2974G", "G3016A", "C3030A", "C3055T", "C3056T", "A3061G", "T3181C", "T3256A", "A3292G", "T3358C", "G3435A", "A3651G", "A3706G", "G3952A", "A4096G", "G4151C", "T4153C", "C4162T", "A4249G", "A4254G", "G4264A", "A4333G", "C4652T", "T4674C", "G4677A", "C4679T", "T4701C", "G4723A", "T4754G", "T4776C", "A4860G", "A4950G", "A5045C", "G5059A", "G5128A", "C5132T", "T5245C", "A5247G", "G5257A", "T5292C", "G5312A", "C5351T", "G5361A", "C5482T", "A5499G", "T5515C", "C5552A", "A5560C", "A5587G", "C5641T", "A5670T", "T5679C", "G5686C", "C5687T", "T5688C", "T5696A", "G5712A", "A5715G", "G5734A", "A5737G", "G5739T", "T5793G", "T5851G", "C5958T", "G5963A", "T5964A", "A5965G", "A6059C", "G6065A", "C6145T", "C6153T", "T6170G", "G6172T", "T6184A", "T6187A", "C6190A", "A6194T", "-6196C", "-6198C", "-6208A", "A6212T", "A6219C", "G6221A", "G6261A", "-6278C", "-6279G", "A6281-", "A6282-", "C6293T", "T6295A", "A6303C", "C6305A", "A6333G", "G6339A", "C6340T", "T6454C", "A6465C", "C6477A", "A6589G", "G6714A", "C6752A", "A6765C", "G6771A", "A6785C", "-6835C", "C6876T", "T6958-", "A6962G", "G6969-", "-6971A", "-6972G", "-6973T", "-6974C", "-6975C", "-6976T", "-6977G", "-6978G", "-6979A", "-6986T", "G6999A", "G7004A", "C7008A", "C7045T", "C7094A", "G7126A", "A7151G", "T7153G", "C7165A", "T7222C", "A7237G", "T7357C", "G7402A", "A7439C", "G7440A", "A7553C", "C7590A", "T7626A", "G7627C", "G7640A", "G7677A", "A7689G", "G7712A", "C7723T", "A7733C", "T7757C", "A7799C", "C7801A", "C7825T", "G7846A", "A7858G", "G7862A", "T7870A", "G7939T", "A7957G", "A7971C", "C7984A", "G7992A", "G8030A", "C8044G", "G8079T", "C8092T", "A8093C", "G8130A", "G8134C", "A8191G", "A8204G", "C8213T", "G8255A", "A8271T", "A8323T", "G8469A", "G8479A", "-8487A", "-8488A", "-8489T", "A8493-", "A8494-", "T8495-", "G8506A", "A8517G", "A8617G", "C8741T", "C8791A", "G8834A", "T8923C"], "INT": ["V126L", "K160R"], "RT-p51": ["K11T", "E43Q", "V111I", "K166R", "K174E", "M178I", "V179I", "A286T", "D291E", "I292V", "T312N", "P321S"], "RT-p66": ["K11T", "E43Q", "V111I", "K166R", "K174E", "M178I", "V179I", "A286T", "D291E", "I292V", "T312N", "P321S", "S447N", "N519S"], "gp120": ["N4K", "T35I", "V37K", "K69Q", "D71N", "T100I", "L106V", "N111K", "N113I", "-115E", "E122-", "S136N", "-142R", "K143D", "D144-", "K150T", "L151I", "Q155P", "N160S", "K204T", "T208K", "R287Q", "Q300K", "N304T", "S306N", "N311H", "P341L", "-370G", "-372S", "-373P", "-374T", "-375E", "-376N", "-377S", "T380-", "T385-", "N433E", "T436N"], "gp41": ["R46Q", "I84L", "L108H", "N109D", "D113N", "S125N", "K129R", "E137K", "K144Q", "N166Q", "V187I", "Q212H", "E223A", "G230D", "A243T", "D247E", "R259L", "I264L", "I301V", "L304F", "V318I", "Q323L"], "nef": ["V43I", "S46N", "C55N", "R59G", "K92R", "P150Q", "I194T"], "p1": ["S8P"], "p17": ["A54G", "S66P", "T67A", "L75I", "K76R", "W86Y", "V88I", "R91K", "V107I", "N109K", "A119T"], "p2": ["N9H", "-11A", "-12N"], "p24": ["V83I", "T110N", "S120N", "T178S"], "p6": ["L24S", "-26R", "K27-"], "p7": ["K20R"], "rev": ["L13I", "Y28F", "T37A", "S61N", "R66G", "G96Q", "K115E"], "tat": ["Y47H", "P59H", "S62R", "K71E", "D83G"], "vif": ["Y30H", "F39L", "S46N", "H56Q", "R92G", "N93R", "R122G", "L153F", "R158K", "R181K"], "vpr": ["P10S", "N48S", "I63T", "V70I", "G86R"], "vpu": ["A27L", "V43I", "K44D", "D62E", "L82V"]}, "labels": {"aa": "INT: V126L, K160R; RT-p51: K11T, E43Q, V111I, K166R, K174E, M178I, V179I, A286T, D291E, I292V, T312N, P321S; RT-p66: K11T, E43Q, V111I, K166R, K174E, M178I, V179I, A286T, D291E, I292V, T312N, P321S, S447N, N519S; gp120: N4K, T35I, V37K, K69Q, D71N, T100I, L106V, N111K, N113I, -115E, E122-, S136N, -142R, K143D, D144-, K150T, L151I, Q155P, N160S, K204T, T208K, R287Q, Q300K, N304T, S306N, N311H, P341L, -370G, -372S, -373P, -374T, -375E, -376N, -377S, T380-, T385-, N433E, T436N; gp41: R46Q, I84L, L108H, N109D, D113N, S125N, K129R, E137K, K144Q, N166Q, V187I, Q212H, E223A, G230D, A243T, D247E, R259L, I264L, I301V, L304F, V318I, Q323L; nef: V43I, S46N, C55N, R59G, K92R, P150Q, I194T; p1: S8P; p17: A54G, S66P, T67A, L75I, K76R, W86Y, V88I, R91K, V107I, N109K, A119T; p2: N9H, -11A, -12N; p24: V83I, T110N, S120N, T178S; p6: L24S, -26R, K27-; p7: K20R; rev: L13I, Y28F, T37A, S61N, R66G, G96Q, K115E; tat: Y47H, P59H, S62R, K71E, D83G; vif: Y30H, F39L, S46N, H56Q, R92G, N93R, R122G, L153F, R158K, R181K; vpr: P10S, N48S, I63T, V70I, G86R; vpu: A27L, V43I, K44D, D62E, L82V"}}}]}]}]}]}]}, {"name": "NODE_0000707", "node_attrs": {"div": 0.10424, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-161T", "A426C", "C1741T", "T6287C", "C6692A", "G7735A", "C7843T", "G8917A"], "gp120": ["Y145H"], "p6": ["T21I", "P24S", "L38P"]}, "labels": {"aa": "gp120: Y145H; p6: T21I, P24S, L38P"}}, "children": [{"name": "NODE_0000708", "node_attrs": {"div": 0.10672, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C596T", "A2626C", "T2671C", "C2689T", "G2714C", "C2715A", "T2716A", "A2722G", "C2728G", "T2740C", "A3866G", "A3891G", "A4916C", "A6234G", "C6318A", "A6333G", "G6806A", "-6986A", "-6987A", "-6988T", "-6991C", "-6993C", "C7164A", "A8069C", "T8171C", "A8947T"], "INT": ["I31V", "N39S"], "RT-p51": ["A207Q", "S211K"], "RT-p66": ["A207Q", "S211K"], "gp120": ["-433N"], "gp41": ["T210S"], "nef": ["Q22R", "Y202F"], "vif": ["Q110H"]}, "labels": {"aa": "INT: I31V, N39S; RT-p51: A207Q, S211K; RT-p66: A207Q, S211K; gp120: -433N; gp41: T210S; nef: Q22R, Y202F; vif: Q110H"}}, "children": [{"name": "NODE_0000709", "node_attrs": {"div": 0.10934999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A1670G", "G2215A", "G2542T", "T2613A", "G3473A", "C4076A", "G4182A", "G4677A", "A5357G", "-6174A", "T6180A", "G7195A", "A7931T", "G8219A", "C8287T", "G8469A", "G8486A", "T8675C", "A8717C", "G8753A", "G8981A"], "INT": ["L101I", "R136Q"], "RT-p51": ["I173K"], "RT-p66": ["I173K", "D460N"], "gp120": ["H280T", "M447I"], "gp41": ["A306T"], "nef": ["V43I"], "p2": ["-11A", "-12N"], "rev": ["Y28F"]}, "labels": {"aa": "INT: L101I, R136Q; RT-p51: I173K; RT-p66: I173K, D460N; gp120: H280T, M447I; gp41: A306T; nef: V43I; p2: -11A, -12N; rev: Y28F"}}, "children": [{"name": "results/subtype_trees/CRF52_01B.nwk", "node_attrs": {"div": 0.12863999999999998, "clade_membership": {"value": "CRF52_01B"}}, "branch_attrs": {"mutations": {"nuc": ["-304T", "A423C", "G424A", "T575C", "A585G", "C830T", "C851T", "G1090A", "-1783A", "A1907G", "A2211C", "G2222A", "C2236T", "A2470G", "A2518G", "C2521T", "G2578A", "A2579T", "C2605T", "A2615C", "C2653T", "G2707A", "A2710G", "G2755A", "G2764A", "A2788T", "T3197C", "G3435A", "G4078A", "C4826T", "A4864T", "C4916A", "A5462T", "G6167A", "-6175C", "A6194G", "-6203A", "-6204G", "-6207A", "T6213-", "A6215-", "G6218-", "A6219-", "-6225A", "-6226T", "G6693C", "A6734G", "T6735A", "A6736C", "G6788A", "A6791G", "-6977G", "-6978A", "-6979G", "-6980G", "-6981A", "-6983T", "-6984A", "-6985T", "-6989G", "-6990A", "A7158C", "G7366A", "A7655G", "A7734G", "C8092A", "A8093C", "G8145C", "C8156T", "T8157G", "G8159T", "T8167C", "T8172A", "A8173G", "G8180A", "G8181T", "A8194G", "T8196A", "A8204G", "T8207A", "C8208G", "T8209C", "A8227T", "G8239T", "G8241A", "T8243G", "G8280A", "G8281T", "G8304C", "C8311A", "A8323C", "C8342G", "A8348T", "A8364T", "C8369T", "A8370G", "A8372G", "G8373-", "T8374-", "G8375-", "C8385A", "C8390A", "A8402G", "A8403G", "G8404A", "G8405A", "A8407G", "A8409G", "C8412G", "C8413A", "T8414G", "A8426T", "A8429G", "A8432G", "A8446G", "T8450C", "A8453G", "T8456A", "A8471C", "T8480C", "T8485C", "-8487G", "-8488C", "-8489A", "-8490G", "-8491C", "A8503C", "T8509C", "G8516A", "A8517G", "G8518A", "A8531G", "G8794A", "G8807A", "T8923C", "T8939C", "G8945A"], "RT-p51": ["K39T", "E43K", "S162C", "K174Q", "E177D"], "RT-p66": ["K39T", "E43K", "S162C", "K174Q", "E177D", "S447N"], "gp120": ["V37A", "D105N", "-106L", "-107T", "-109G", "-111N", "-112T", "-117G", "-119L", "I156M", "E312K", "T313V", "-375E", "-378N", "-380T", "V402A", "N414T"], "gp41": ["K144R", "F263L", "I264L", "G281A", "L285W", "G286W", "L290Q", "G293I", "I298N", "I301V", "G313E", "W314G", "W326Y", "R334T", "L340F"], "nef": ["S8C", "I10V", "V11-", "Q15R", "I20M", "R21E", "T23A", "P24E", "E28D", "Q35R", "D38E", "M48T", "N49A", "-50A", "-51N", "V56A", "R59E", "Q125H", "R151K", "I194T"], "p17": ["R30Q", "S66P"], "p2": ["N9H"], "p24": ["S120N"], "p6": ["P25L"], "pro": ["N37D"], "rev": ["H82T", "R99S", "S103L", "G104V", "S107P", "V108A", "I109V", "G111D", "N116E"], "vif": ["N93I", "H110Q"]}, "labels": {"aa": "RT-p51: K39T, E43K, S162C, K174Q, E177D; RT-p66: K39T, E43K, S162C, K174Q, E177D, S447N; gp120: V37A, D105N, -106L, -107T, -109G, -111N, -112T, -117G, -119L, I156M, E312K, T313V, -375E, -378N, -380T, V402A, N414T; gp41: K144R, F263L, I264L, G281A, L285W, G286W, L290Q, G293I, I298N, I301V, G313E, W314G, W326Y, R334T, L340F; nef: S8C, I10V, V11-, Q15R, I20M, R21E, T23A, P24E, E28D, Q35R, D38E, M48T, N49A, -50A, -51N, V56A, R59E, Q125H, R151K, I194T; p17: R30Q, S66P; p2: N9H; p24: S120N; p6: P25L; pro: N37D; rev: H82T, R99S, S103L, G104V, S107P, V108A, I109V, G111D, N116E; vif: N93I, H110Q", "clade": "CRF52_01B"}}, "children": [{"name": "AY945734", "node_attrs": {"div": 0.15574999999999997, "accession": "AY945734", "clade_membership": {"value": "CRF52_01B"}, "country": {"value": "TH"}, "date": {"value": 2000.0}, "Strain_name": {"value": "00TH_R1741"}, "LANL_subtype": {"value": "CRF52_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T357C", "T435A", "G495A", "G530A", "T531C", "C558G", "C586T", "A643G", "A692G", "A735C", "A742G", "C748T", "G791A", "G911A", "A932G", "G978A", "C983T", "A1017C", "T1052A", "A1176G", "A1202T", "T1229C", "A1253G", "A1263T", "A1277G", "T1296C", "A1364G", "A1412G", "G1586A", "A1656C", "A1701T", "A1718G", "A1742G", "C1755A", "A1777G", "A1781G", "T1784C", "C1792T", "C1826A", "A1846G", "G1855A", "A1897G", "G1963A", "A2002T", "T2011C", "T2080C", "T2086A", "T2101C", "A2230G", "A2233G", "G2248A", "C2420T", "A2462G", "G2463A", "G2473A", "T2499G", "T2654C", "G2727A", "C2749T", "G2869A", "A2887G", "G2951A", "C2968A", "A2969G", "A2974C", "C2975G", "G2984A", "A2985C", "G3097A", "A3142G", "T3175C", "A3224C", "C3225T", "A3230T", "A3259G", "A3295C", "G3316A", "G3477A", "T3496C", "C3541T", "C3542T", "A3625T", "A3637C", "G3644A", "C3751T", "G3766A", "G3772A", "T3793C", "G3866A", "G3869A", "G3877A", "A3886G", "A3937G", "T3962C", "A3985G", "C4146G", "T4234A", "G4243A", "A4254G", "A4270G", "A4427T", "C4501T", "T4674C", "G4727A", "A4778G", "A4781G", "T4826A", "G4861A", "T4864C", "C4890T", "A4950G", "T4957C", "G4968A", "C4977A", "T4991C", "A5039G", "T5072C", "A5187G", "G5236A", "G5272A", "A5287G", "A5305G", "A5355C", "G5357A", "C5372G", "G5375A", "C5397T", "T5412G", "G5418A", "A5431G", "G5448T", "T5462G", "T5467A", "C5482A", "G5493A", "A5555G", "G5556C", "A5557C", "T5568C", "A5575G", "A5587G", "G5619T", "A5655T", "T5659C", "G5692C", "T5695A", "G5699A", "A5710C", "G5711A", "G5712A", "A5718G", "G5734A", "A5781G", "A5784G", "G5864A", "G5893A", "G5963A", "C6145T", "A6158G", "T6163C", "C6166T", "-6170T", "-6172G", "A6174C", "T6178G", "A6180G", "T6181C", "A6182G", "C6183G", "T6184G", "T6187C", "C6190A", "A6192C", "T6193C", "G6195A", "C6196T", "-6198G", "-6201G", "-6202G", "-6205G", "A6209T", "-6211T", "A6214-", "-6222C", "G6234A", "C6238T", "A6251G", "A6265G", "G6267A", "A6268T", "A6303G", "A6319C", "T6322G", "A6330G", "A6335G", "G6336A", "T6337G", "-6340A", "G6376A", "T6446C", "C6563T", "T6598C", "G6605A", "A6691G", "A6712G", "A6714G", "A6751G", "G6773C", "G6774A", "A6781T", "A6785T", "C6792T", "A6798G", "G6809A", "A6814G", "A6818G", "A6845G", "A6848G", "A6900C", "T6901C", "A6937C", "C6938T", "G6948A", "-6955C", "-6956T", "-6957T", "-6958G", "-6959A", "-6960A", "-6961T", "-6962G", "-6963A", "-6964A", "-6965A", "-6966C", "-6967C", "-6968A", "-6969A", "-6970G", "-6982G", "A6984G", "G6989A", "C6993T", "-6994T", "-7001A", "-7002C", "-7003T", "-7004A", "-7005A", "C7006A", "G7026A", "A7040G", "A7046C", "T7059C", "A7095G", "A7149T", "A7157G", "T7159A", "A7161C", "C7165T", "A7241C", "A7275G", "C7393T", "G7534A", "G7589A", "C7590A", "A7701C", "T7708C", "G7720A", "G7726A", "A7753G", "A7782G", "G7790A", "A7791G", "G7831A", "A7964G", "C7984A", "A8011C", "A8032T", "C8069A", "T8097C", "C8103T", "G8105A", "G8158T", "T8215C", "G8216A", "G8264A", "C8268T", "G8276A", "C8293T", "T8366C", "G8368T", "T8369G", "T8371C", "A8386G", "T8440C", "A8458G", "C8491A", "-8492A", "C8514G", "T8539A", "A8540G", "T8567C"], "INT": ["V31I", "V32I", "A124G", "K160R", "T218S"], "RT-p51": ["S123D", "I135R", "A286T", "D291E", "I292V", "P294A", "E297T", "T377L", "S379C"], "RT-p66": ["S123D", "I135R", "A286T", "D291E", "I292V", "P294A", "E297T", "T377L", "S379C", "R461K", "H483Y", "E514D", "V517I"], "gp120": ["D4N", "A37M", "N102D", "N108K", "T110G", "-113T", "-114D", "-123T", "-124D", "M133V", "R138N", "K150R", "Q155H", "N159S", "N160S", "S161E", "S162K", "D251N", "I279M", "Q287R", "G307Q", "K309N", "N311Y", "K315R", "A318T", "K322E", "N327-", "I331V", "I332V", "N349T", "K361N", "S365N", "-367C", "-368L", "-369N", "-370E", "-371T", "-372K", "-373E", "-376C", "-377N", "-379I", "-381K", "R391K", "I396V", "M398L", "T414R", "N432I", "N435A", "I463L", "K474R"], "gp41": ["M54L", "A96N", "I118V", "E133A", "N160S", "D163S", "M176I", "R221G", "L265S", "A267V", "A268T", "W285C", "D305N", "V321I", "A322V", "A325T"], "nef": ["S9M", "V10A", "V33A", "K39R", "A50E", "D54A", "L58V"], "p1": ["N9H"], "p17": ["M31L", "L34I", "A54T", "L75V", "T84V", "K103R"], "p24": ["I2L", "Q4R", "A6V", "V83I", "M96L", "S149G", "T178S"], "p6": ["T8S", "I21M", "L25M", "K33R", "P38L"], "pro": ["L10I"], "rev": ["R14A", "I18T", "K39R", "I55L", "T62S", "S86N", "V104L"], "tat": ["N12K", "T19A", "K24N", "K29R", "C31S", "L36I", "Q60R", "S61R", "N67D", "K71E"], "vif": ["Y30H", "H80Q", "R92K", "I93T", "K122E", "I124T", "V128I", "R131S"], "vpr": ["N28S", "I61M", "I84L", "P85R"], "vpu": ["L4F", "E29Q", "F30I", "R31K", "R35Q", "V43I"]}, "labels": {"aa": "INT: V31I, V32I, A124G, K160R, T218S; RT-p51: S123D, I135R, A286T, D291E, I292V, P294A, E297T, T377L, S379C; RT-p66: S123D, I135R, A286T, D291E, I292V, P294A, E297T, T377L, S379C, R461K, H483Y, E514D, V517I; gp120: D4N, A37M, N102D, N108K, T110G, -113T, -114D, -123T, -124D, M133V, R138N, K150R, Q155H, N159S, N160S, S161E, S162K, D251N, I279M, Q287R, G307Q, K309N, N311Y, K315R, A318T, K322E, N327-, I331V, I332V, N349T, K361N, S365N, -367C, -368L, -369N, -370E, -371T, -372K, -373E, -376C, -377N, -379I, -381K, R391K, I396V, M398L, T414R, N432I, N435A, I463L, K474R; gp41: M54L, A96N, I118V, E133A, N160S, D163S, M176I, R221G, L265S, A267V, A268T, W285C, D305N, V321I, A322V, A325T; nef: S9M, V10A, V33A, K39R, A50E, D54A, L58V; p1: N9H; p17: M31L, L34I, A54T, L75V, T84V, K103R; p24: I2L, Q4R, A6V, V83I, M96L, S149G, T178S; p6: T8S, I21M, L25M, K33R, P38L; pro: L10I; rev: R14A, I18T, K39R, I55L, T62S, S86N, V104L; tat: N12K, T19A, K24N, K29R, C31S, L36I, Q60R, S61R, N67D, K71E; vif: Y30H, H80Q, R92K, I93T, K122E, I124T, V128I, R131S; vpr: N28S, I61M, I84L, P85R; vpu: L4F, E29Q, F30I, R31K, R35Q, V43I"}}}, {"name": "CRF52_01B_NODE_0000001", "node_attrs": {"div": 0.13178999999999996, "clade_membership": {"value": "CRF52_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C426A", "T774G", "A1841G", "C2485T", "A2808G", "G3491A", "T3779C", "A4650C", "T4701G", "A5159G", "C5250A", "T5636C", "G5907A", "T5964C", "A6186T", "G6323A", "G6392A", "-6833A", "-6834A", "-6974A", "-6976A", "G7132A", "C7463A", "T7843C", "C7929T", "T8047C", "G8107A", "C8112T", "A8151G", "-8492T"], "RT-p51": ["K211R", "K238R"], "RT-p66": ["K211R", "K238R", "V466I"], "gp120": ["R18K", "E125-", "D157N", "V180I"], "gp41": ["P209L", "T270I", "K283R"], "p24": ["L15V"], "p6": ["V39S"], "pro": ["I15V"], "rev": ["S67P", "E87K"], "tat": ["K29I", "L74F"], "vif": ["N22H", "F39V"], "vpr": ["T19A", "T49N"], "vpu": ["V10A"]}, "labels": {"aa": "RT-p51: K211R, K238R; RT-p66: K211R, K238R, V466I; gp120: R18K, E125-, D157N, V180I; gp41: P209L, T270I, K283R; p24: L15V; p6: V39S; pro: I15V; rev: S67P, E87K; tat: K29I, L74F; vif: N22H, F39V; vpr: T19A, T49N; vpu: V10A"}}, "children": [{"name": "DQ366664", "node_attrs": {"div": 0.15575999999999995, "accession": "DQ366664", "clade_membership": {"value": "CRF52_01B"}, "country": {"value": "MY"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03MYKL018_1"}, "LANL_subtype": {"value": "CRF52_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A303T", "T357C", "T571A", "C583T", "G585A", "A605G", "G614T", "A647G", "T655C", "C669A", "C672T", "A674C", "G706A", "A716G", "A975C", "G1127A", "C1136A", "A1253G", "A1350T", "A1355T", "T1451A", "G1452C", "C1453A", "A1454T", "A1456C", "T1457A", "-1458A", "-1459A", "-1460T", "A1492C", "G1493A", "T1574C", "A1580G", "A1587C", "T1616G", "G1661A", "A1691G", "A1772G", "A1781T", "A1783C", "A1819G", "C1831T", "A1857G", "G1963A", "T2071C", "C2199T", "G2350C", "A2371G", "T2453C", "A2498G", "A2510G", "C2944T", "A2969G", "C3129A", "A3136G", "G3169A", "G3173T", "A3217G", "A3292T", "T3303C", "T3346C", "T3505A", "A3521C", "C3550A", "G3667A", "C3712T", "A3836G", "G3869A", "C3991T", "A4333G", "T4656G", "A4677G", "A4688G", "A4782G", "A4860G", "A4863C", "T4932G", "G4978A", "G4982A", "T5084C", "A5093G", "G5128A", "G5131A", "A5142C", "C5146A", "T5182C", "C5222T", "A5247C", "T5293C", "A5345G", "T5356C", "G5385A", "A5446T", "A5447C", "C5482T", "T5515C", "A5581G", "A5587G", "A5611C", "C5612A", "G5619A", "A5644G", "G5699A", "A5720G", "G5739A", "T5797-", "T5798-", "G5799-", "G5800T", "C5801T", "C5802G", "A5803G", "A5804C", "A5805C", "C5806A", "T5807C", "T5808A", "-5809C", "-5810T", "-5811T", "C5866A", "T6046C", "C6067A", "T6072C", "T6134C", "C6148T", "-6170G", "T6171C", "-6172T", "C6175A", "G6179A", "T6181A", "A6191T", "A6192C", "G6194A", "G6195A", "C6196A", "-6198C", "T6199A", "-6201T", "-6202A", "A6203G", "-6205A", "A6208T", "A6209C", "-6211A", "-6213C", "A6221-", "A6223-", "A6249G", "A6266C", "G6267A", "A6268G", "A6273G", "G6284A", "T6289G", "T6322G", "A6327G", "G6336A", "A6339G", "-6340T", "G6376A", "T6446C", "C6599A", "C6607T", "G6611A", "A6649G", "A6692G", "C6693G", "-6697G", "A6703-", "A6714G", "A6723T", "C6736A", "A6759T", "C6792T", "C6807A", "T6808G", "-6835T", "A6848G", "T6849A", "T6888C", "G6889A", "A6935C", "A6936T", "G6948A", "C6951A", "-6955C", "-6975C", "G6979A", "G6980A", "-6982T", "T6983G", "T6985A", "A6987C", "A6990G", "C6991G", "-6994G", "-6995G", "-6996G", "-6997G", "-6998T", "-6999G", "-7000T", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "C7006A", "A7057T", "C7084T", "A7095T", "G7106A", "A7138C", "G7146A", "T7150A", "A7152G", "T7156A", "C7158A", "A7160G", "T7162C", "A7164G", "C7170T", "A7195G", "A7265T", "G7269A", "A7373C", "T7466C", "G7534A", "C7597T", "T7625C", "A7630T", "C7645G", "G7655A", "G7658C", "A7688G", "C7691A", "A7703C", "A7742C", "G7744A", "T7747G", "T7774C", "T7825C", "A7996C", "A8029T", "C8038G", "G8070T", "T8138G", "A8150C", "G8255A", "C8268T", "C8323A", "G8370-", "T8371-", "G8372-", "A8386G", "A8413G", "T8440C", "A8458G", "A8494C", "C8503A", "A8540G", "C8543T", "G8588A", "T8594C", "T8603C", "A8617G", "C8675T", "A8827G", "G8846A", "A8859C", "T8860A", "G8861A", "A8874G", "A8917C", "A9042G", "A9135G"], "INT": ["T21A", "V32I"], "RT-p51": ["T35I", "Q85H", "I135V", "T139A", "I292V", "P345Q", "A360S", "E399D", "M403T"], "RT-p66": ["T35I", "Q85H", "I135V", "T139A", "I292V", "P345Q", "A360S", "E399D", "M403T", "K476Q"], "gp120": ["D4E", "N71K", "V73A", "L106A", "T107K", "G109K", "N111I", "-113S", "-114K", "-115T", "-116I", "-118N", "-120T", "-121D", "-122E", "-123V", "-124R", "V126-", "K127-", "N132S", "R138Q", "K140R", "V144I", "H145Q", "N158S", "N160S", "S161N", "L249I", "A253T", "T280G", "I281M", "Q287R", "Y290F", "D294E", "Y302F", "A318K", "I332D", "M345T", "K361L", "S365N", "T366N", "-367C", "-374T", "-376N", "-377E", "N378T", "-379G", "-381G", "-382C", "-383N", "-384E", "A402V", "T414I", "V418I", "R428S", "G431D", "N432K", "N433S", "N434K", "T436D", "N437S", "T439I", "I447M", "T471S", "R472K"], "gp41": ["I24L", "Y108H", "E109D", "N114K", "E119Q", "N129D", "Q130K", "I134L", "K147Q", "D148E", "R231S", "L242F", "S256L", "W279G", "V318I", "A322V", "F340L"], "nef": ["V10-", "E24G", "V33A", "K39R", "N51T", "K92R", "N162S", "M168I", "M173Q", "R178G", "K192T"], "p17": ["P66S", "F79Y", "A83V", "E93D", "I104M", "V107A", "Q112K", "Q113Y", "S124N"], "p2": ["H9Q", "-10H"], "p24": ["T207S"], "p6": ["E34D", "H35P", "N47S", "S51L"], "p7": ["Q9P", "K41Q"], "pro": ["K20R"], "rev": ["S61C", "L64V", "Q74P", "V97G", "Q101P"], "tat": ["K24S", "Y47H", "I69V", "K71E"], "vif": ["L24V", "I31V", "I66V", "R92G", "I93L", "S116A", "R131H", "R181K", "G182D", "N186H", "P187H"], "vpr": ["E13A", "H40Y", "N48T", "I84T", "G94S"], "vpu": ["T2Q", "I13V", "R31K", "K38R", "K66T"]}, "labels": {"aa": "INT: T21A, V32I; RT-p51: T35I, Q85H, I135V, T139A, I292V, P345Q, A360S, E399D, M403T; RT-p66: T35I, Q85H, I135V, T139A, I292V, P345Q, A360S, E399D, M403T, K476Q; gp120: D4E, N71K, V73A, L106A, T107K, G109K, N111I, -113S, -114K, -115T, -116I, -118N, -120T, -121D, -122E, -123V, -124R, V126-, K127-, N132S, R138Q, K140R, V144I, H145Q, N158S, N160S, S161N, L249I, A253T, T280G, I281M, Q287R, Y290F, D294E, Y302F, A318K, I332D, M345T, K361L, S365N, T366N, -367C, -374T, -376N, -377E, N378T, -379G, -381G, -382C, -383N, -384E, A402V, T414I, V418I, R428S, G431D, N432K, N433S, N434K, T436D, N437S, T439I, I447M, T471S, R472K; gp41: I24L, Y108H, E109D, N114K, E119Q, N129D, Q130K, I134L, K147Q, D148E, R231S, L242F, S256L, W279G, V318I, A322V, F340L; nef: V10-, E24G, V33A, K39R, N51T, K92R, N162S, M168I, M173Q, R178G, K192T; p17: P66S, F79Y, A83V, E93D, I104M, V107A, Q112K, Q113Y, S124N; p2: H9Q, -10H; p24: T207S; p6: E34D, H35P, N47S, S51L; p7: Q9P, K41Q; pro: K20R; rev: S61C, L64V, Q74P, V97G, Q101P; tat: K24S, Y47H, I69V, K71E; vif: L24V, I31V, I66V, R92G, I93L, S116A, R131H, R181K, G182D, N186H, P187H; vpr: E13A, H40Y, N48T, I84T, G94S; vpu: T2Q, I13V, R31K, K38R, K66T"}}}, {"name": "DQ354113", "node_attrs": {"div": 0.15212999999999996, "accession": "DQ354113", "clade_membership": {"value": "CRF52_01B"}, "country": {"value": "TH"}, "date": {"value": 1996.0}, "Strain_name": {"value": "M043"}, "LANL_subtype": {"value": "CRF52_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T372C", "T479C", "T531C", "T596C", "G608A", "T635C", "G697A", "A715C", "A724G", "G762A", "T763C", "C947T", "A989C", "A1208G", "G1232A", "G1388A", "G1508A", "A1664G", "G1670A", "A1694G", "G1739-", "A1740-", "T1741-", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "T1752G", "C1753T", "A1754T", "T1796C", "A2075C", "T2116G", "A2127C", "A2154G", "A2210T", "C2211T", "G2380A", "A2599G", "A2614G", "G2878A", "C2910G", "C2960T", "G3071A", "A3124G", "A3151G", "G3221T", "A3230G", "G3340A", "A3474G", "T3545C", "C3600T", "C3628T", "A3637G", "C3649A", "A3682T", "G3685A", "T3778C", "A3845G", "A3868G", "G3877A", "G3878C", "G3891A", "C4009T", "T4126C", "G4145A", "C4198T", "G4264A", "A4285G", "A4384G", "T4678C", "C4728A", "C4761A", "T4772C", "C4937A", "G4975T", "A4987G", "A5005G", "G5176A", "C5242T", "G5279A", "T5293G", "C5384T", "G5493A", "C5511T", "A5548C", "G5561A", "T5568G", "A5607T", "A5611T", "G5620A", "A5621C", "T5708A", "G5711A", "C5727T", "G5791A", "G5839A", "A6164-", "C6165-", "C6166-", "A6167-", "A6168-", "T6169-", "T6171-", "A6180C", "A6185T", "T6187G", "-6198A", "-6201A", "-6202C", "-6205T", "A6207G", "T6210G", "-6211G", "-6213A", "-6215T", "-6216T", "-6217T", "-6218A", "-6219A", "-6220C", "-6222G", "A6225G", "T6226A", "G6227-", "A6228-", "C6263A", "T6328G", "T6331C", "G6333A", "A6338G", "-6340G", "A6375G", "G6481A", "A6574T", "A6581G", "G6605A", "C6612T", "T6745C", "A6748T", "A6767G", "A6806G", "A6810G", "-6835A", "T6896G", "C6951T", "T6953-", "G6954-", "-6964C", "-6965A", "-6966C", "-6967A", "-6968T", "-6969G", "-6970G", "-6971A", "-6972C", "-6973T", "-6975T", "A6981G", "-6982A", "T7018G", "G7026A", "T7059C", "A7085G", "A7095C", "G7106T", "A7148G", "A7149C", "A7154G", "T7159G", "A7160C", "T7162A", "A7249G", "A7322G", "A7541C", "A7626T", "G7640A", "T7656C", "G7702T", "G7857A", "A7885G", "A7891G", "T7920C", "C7926T", "C8005A", "C8069A", "C8103T", "G8105A", "T8215C", "G8216A", "A8219G", "C8220T", "T8221C", "T8281C", "C8294A", "G8349A", "-8373G", "-8374T", "-8375T", "G8387T", "C8406A", "A8438G", "A8465G", "G8490A", "A8536G", "A8656G", "G8666C", "C8688A", "A8793G", "A8824C", "T8887G", "G8888A", "A8892C", "T8947A", "C9023T", "A9026G", "C9129T"], "INT": ["S24G", "E35Q", "S39N", "A124T", "I203M"], "RT-p51": ["K11T", "K20R", "T39L", "A272G", "V326I", "A376S", "S379G"], "RT-p66": ["K11T", "K20R", "T39L", "A272G", "V326I", "A376S", "S379G", "N460S", "A502V", "E529D"], "gp120": ["T104N", "T110N", "-113P", "-114T", "-115G", "-116P", "K127R", "L137I", "M156I", "N158K", "S162E", "K174R", "E240D", "I243V", "D251N", "A253V", "I305V", "V313A", "K319G", "-326K", "N328-", "F348V", "-376G", "-377Y", "-379D", "R391K", "I411V", "V418L", "N432A", "N434D", "N435T", "T436Q"], "gp41": ["M7V", "K80Q", "Y108F", "D113N", "I118A", "E133D", "R185K", "F206S", "T208I", "A267V", "A268T", "D305N", "T306V", "H331N"], "nef": ["G3S", "-11V", "R15N", "A50T", "D54A", "E65G", "K105R", "E108D", "H116N", "K151E", "N161T", "M182R", "K184Q", "F202Y"], "p17": ["T84A", "G121D", "K127T", "Q130R"], "p24": ["V11T"], "p6": ["S24V"], "pro": ["I93L"], "rev": ["E11D", "V16I", "I18S", "R53S", "S86N"], "tat": ["P3L", "T58P", "S62N", "D64E", "P73S"], "vif": ["I31T", "H48N", "L59I", "D117E", "R130I", "E134G", "N140S"], "vpr": ["A59T", "I63M", "I84M"], "vpu": ["T2S", "E5T", "L34Q", "R35K", "D62N", "V78I"]}, "labels": {"aa": "INT: S24G, E35Q, S39N, A124T, I203M; RT-p51: K11T, K20R, T39L, A272G, V326I, A376S, S379G; RT-p66: K11T, K20R, T39L, A272G, V326I, A376S, S379G, N460S, A502V, E529D; gp120: T104N, T110N, -113P, -114T, -115G, -116P, K127R, L137I, M156I, N158K, S162E, K174R, E240D, I243V, D251N, A253V, I305V, V313A, K319G, -326K, N328-, F348V, -376G, -377Y, -379D, R391K, I411V, V418L, N432A, N434D, N435T, T436Q; gp41: M7V, K80Q, Y108F, D113N, I118A, E133D, R185K, F206S, T208I, A267V, A268T, D305N, T306V, H331N; nef: G3S, -11V, R15N, A50T, D54A, E65G, K105R, E108D, H116N, K151E, N161T, M182R, K184Q, F202Y; p17: T84A, G121D, K127T, Q130R; p24: V11T; p6: S24V; pro: I93L; rev: E11D, V16I, I18S, R53S, S86N; tat: P3L, T58P, S62N, D64E, P73S; vif: I31T, H48N, L59I, D117E, R130I, E134G, N140S; vpr: A59T, I63M, I84M; vpu: T2S, E5T, L34Q, R35K, D62N, V78I"}}}]}]}, {"name": "NODE_0000712", "node_attrs": {"div": 0.12323999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A380T", "T392C", "G428A", "T435C", "T485A", "G495A", "A513C", "A515G", "A562G", "G579A", "G614T", "A645C", "A699G", "C707T", "A714C", "G803A", "A944G", "C1103T", "C1331T", "T1335C", "G1430A", "A1442C", "C1444T", "A1445G", "A1450-", "-1747C", "-1748C", "C1786A", "G1855A", "A2149G", "G2164A", "G2428A", "A2842G", "C2885T", "T3346C", "C3391A", "T3545C", "G3715A", "G3772A", "T3793C", "T3799C", "C3826T", "T3856C", "T3857C", "A3862G", "C3892T", "G3896A", "A3907G", "G3916A", "T3922C", "G3952A", "C3970T", "C3977T", "A3988G", "G3989A", "C3991T", "C4009T", "G4012A", "C4042T", "A4051G", "A4057G", "G4060A", "G4063A", "G4078C", "C4079T", "G4264A", "C4471T", "A4695G", "A4696G", "G4769A", "A4774G", "C4898T", "A4900G", "G4978A", "G5059A", "G5128T", "G5312A", "A5355T", "C5478T", "T5696A", "C5713G", "C5802T", "C5834A", "C6023T", "-6170G", "-6175G", "T6178C", "-6211T", "-6217A", "T6242A", "A6281C", "T6325G", "G6526A", "A6810C", "-6835T", "-7003T", "A7164-", "A7190G", "G7702C", "A7703C", "A7756G", "T7801C", "A8029G", "A8032G", "C8038G", "G8070T", "C8131A", "A8132C", "A8184G", "A8191G", "C8213T", "A8273G", "G8274C", "G8349A", "A8399G", "T8505A", "G8534A", "C8684T", "C8688A", "C8699T"], "INT": ["D41N", "V72I"], "RT-p51": ["D432E"], "RT-p66": ["D432E", "V517I"], "gp120": ["H57Y", "S130T", "K143Q", "A318T", "K319A", "N446D"], "gp41": ["E133D", "I134L", "A243T", "S256L", "Q294R", "A310V", "V321A", "R324A"], "nef": ["G3S", "M48I", "C55S", "H116N"], "p17": ["M31L", "A54T", "I60L", "K76R", "V82I", "E93D", "I104L", "T122A", "K127Q"], "p2": ["N9-"], "rev": ["T62A", "L64V", "Q74P", "Q95G", "K115E"], "vif": ["K37G", "K63R", "Q105R", "R131H", "R181M"], "vpr": ["Q8H", "V70I", "I84L"], "vpu": ["F30Y", "Q36E", "P76H"]}, "labels": {"aa": "INT: D41N, V72I; RT-p51: D432E; RT-p66: D432E, V517I; gp120: H57Y, S130T, K143Q, A318T, K319A, N446D; gp41: E133D, I134L, A243T, S256L, Q294R, A310V, V321A, R324A; nef: G3S, M48I, C55S, H116N; p17: M31L, A54T, I60L, K76R, V82I, E93D, I104L, T122A, K127Q; p2: N9-; rev: T62A, L64V, Q74P, Q95G, K115E; vif: K37G, K63R, Q105R, R131H, R181M; vpr: Q8H, V70I, I84L; vpu: F30Y, Q36E, P76H"}}, "children": [{"name": "results/subtype_trees/CRF114_0155.nwk", "node_attrs": {"div": 0.15352, "clade_membership": {"value": "CRF114_0155"}}, "branch_attrs": {"mutations": {"nuc": ["-304A", "-305A", "G361C", "T434C", "A605G", "C645T", "C669A", "T774C", "G1022A", "A1274G", "A1370G", "C1449T", "-1450C", "G1452A", "A1492C", "G1493A", "C1523T", "C1550T", "T1571C", "G1586A", "A1656C", "T1676C", "A1694G", "A1701T", "A1719G", "A1728-", "T1729-", "G1730-", "G1731A", "G1732T", "A1738G", "A1740G", "T1741A", "C1744T", "C1745A", "-1746A", "C1753G", "A1754T", "T1756C", "C1775A", "A1777G", "T1784-", "C1785-", "G1835A", "A1857G", "T1986C", "A2007G", "A2075C", "A2127C", "C2263T", "T2392A", "G2456C", "A2462G", "T2542A", "A2563T", "A2566G", "A2579T", "A2613G", "C2626G", "G2630A", "C2671T", "G2686A", "T2689C", "C2714G", "A2715C", "A2716T", "G2722A", "T2723A", "G2728C", "C2740T", "C2776T", "T2803G", "A2808G", "C2845T", "A2881G", "G2909C", "A2919G", "G3001A", "G3010A", "C3023T", "G3044A", "T3045C", "C3055T", "C3067T", "G3097A", "C3160A", "C3225T", "A3226G", "T3412A", "G3467A", "G3490A", "C3504G", "T3559C", "G3644A", "G3667A", "G3694A", "A3736G", "C3763A", "A3808G", "G3834A", "T3962C", "A3964G", "A4012C", "T4075C", "G4109A", "T4110C", "G4145A", "C4198T", "A4222T", "T4702C", "C4728A", "A4751G", "C4752A", "A4760G", "A4865T", "T4991C", "T4995C", "A5058C", "A5086G", "G5087A", "T5102C", "T5147A", "G5170A", "C5242T", "T5245C", "T5314C", "T5467G", "G5468T", "C5508A", "T5515C", "G5535A", "G5545A", "G5556A", "A5563G", "A5644G", "C5707T", "A5718G", "A5720G", "G5734A", "A5784G", "C5787T", "C5826T", "A5848G", "T5850C", "C5862T", "C5866A", "C5869T", "A5881C", "C5951T", "G5956A", "G5963A", "T5964A", "C5974T", "C5989T", "A6024T", "A6030T", "T6072C", "G6076A", "G6079A", "G6088A", "T6134C", "T6139G", "C6145T", "C6166T", "G6167A", "-6172T", "A6176C", "A6177T", "G6179A", "C6183A", "T6184C", "A6186C", "T6187A", "G6195A", "-6201C", "-6202C", "-6203C", "-6204T", "-6207C", "-6216A", "-6220A", "-6222C", "G6234A", "T6250C", "G6253A", "C6263T", "G6267A", "T6271C", "G6274A", "C6287T", "T6295A", "T6322A", "T6328C", "G6346A", "A6425G", "A6438T", "A6465T", "T6466G", "T6637C", "A6654G", "T6655C", "C6660T", "T6694A", "A6712C", "G6716A", "A6718G", "A6759T", "A6775T", "A6779G", "A6822G", "C6854A", "A6859C", "A6944-", "T6949A", "T6953-", "-6989G", "T7018C", "G7027A", "T7081C", "A7095T", "G7106A", "T7107C", "A7123G", "A7129C", "G7132A", "A7152G", "T7153C", "T7156C", "T7159A", "A7160-", "A7161-", "T7162-", "A7163-", "T7180G", "C7201T", "G7212A", "A7256C", "G7289A", "G7291T", "A7299G", "G7366A", "G7441A", "G7589A", "C7590A", "A7630G", "G7633A", "G7640A", "A7655G", "G7666A", "A7689G", "A7696T", "A7711C", "G7720A", "A7734G", "T7748C", "T7762C", "A7891G", "C7898G", "T7936A", "C7960A", "A7964G", "G7977A", "G8030A", "C8062T", "C8065T", "C8232T", "T8265C", "T8279G", "G8281A", "A8402G", "A8409G", "C8410A", "C8510T", "G8558A", "A8662G", "T8690C", "C8717G", "C8728A"], "INT": ["R20K", "V112T", "A124T"], "RT-p51": ["K11T", "D121H", "S162C", "K173R", "V179I", "Q207A", "L210M", "K211S", "K238R", "A272P", "K275R", "V317T", "T377M"], "RT-p66": ["K11T", "D121H", "S162C", "K173R", "V179I", "Q207A", "L210M", "K211S", "K238R", "A272P", "K275R", "V317T", "T377M", "V458I", "T470S"], "gp120": ["S3L", "D4E", "H33Y", "V37K", "Y57F", "E59V", "V73A", "R138K", "H145Y", "D157E", "N158G", "T191A", "Y195F", "N204M", "N267S", "T269I", "T280R", "V288M", "Y302F", "K309E", "E323G", "Q334K", "N414I", "V418T", "T436-", "N437-", "S453N", "I468L", "E479N", "K482R"], "gp41": ["A96N", "D113N", "I118V", "N129S", "K144R", "Q199E", "R221G", "G225E", "L304F", "W326G"], "nef": ["I20M", "T23Q", "Q107R", "P129Q"], "p1": ["N9H"], "p17": ["S9T", "Q112K"], "p2": ["A7V", "-10S", "A11T"], "p6": ["T8S", "N14D", "G18E", "E19G", "S24C", "D32E", "K33R", "P38S"], "p7": ["Q9P"], "pro": ["V13I", "K20R", "L63P", "K70R", "I93L"], "rev": ["S7N", "R14K", "S30T", "K39R", "S61D", "P72S", "L73F"], "tat": ["C31V", "Y47H", "G57R", "K63E", "P84Q"], "vif": ["F39S", "H48N", "H56N", "S137P", "R158Q", "K167R"], "vpr": ["Y15N"], "vpu": ["I13V", "K38R", "V43I", "N81D"]}, "labels": {"aa": "INT: R20K, V112T, A124T; RT-p51: K11T, D121H, S162C, K173R, V179I, Q207A, L210M, K211S, K238R, A272P, K275R, V317T, T377M; RT-p66: K11T, D121H, S162C, K173R, V179I, Q207A, L210M, K211S, K238R, A272P, K275R, V317T, T377M, V458I, T470S; gp120: S3L, D4E, H33Y, V37K, Y57F, E59V, V73A, R138K, H145Y, D157E, N158G, T191A, Y195F, N204M, N267S, T269I, T280R, V288M, Y302F, K309E, E323G, Q334K, N414I, V418T, T436-, N437-, S453N, I468L, E479N, K482R; gp41: A96N, D113N, I118V, N129S, K144R, Q199E, R221G, G225E, L304F, W326G; nef: I20M, T23Q, Q107R, P129Q; p1: N9H; p17: S9T, Q112K; p2: A7V, -10S, A11T; p6: T8S, N14D, G18E, E19G, S24C, D32E, K33R, P38S; p7: Q9P; pro: V13I, K20R, L63P, K70R, I93L; rev: S7N, R14K, S30T, K39R, S61D, P72S, L73F; tat: C31V, Y47H, G57R, K63E, P84Q; vif: F39S, H48N, H56N, S137P, R158Q, K167R; vpr: Y15N; vpu: I13V, K38R, V43I, N81D", "clade": "CRF114_0155"}}, "children": [{"name": "CRF114_0155_NODE_0000001", "node_attrs": {"div": 0.15392, "clade_membership": {"value": "CRF114_0155"}}, "branch_attrs": {"mutations": {"nuc": ["G413C", "C771G", "G2463A", "G2847A", "A4650C", "A6192C", "T6285C", "A6324G", "G6611A", "A6648G", "T6888C", "A6945C", "C6951A", "-6994T", "C8009A", "A8455C", "G8590C"], "RT-p51": ["S123D", "S251N"], "RT-p66": ["S123D", "S251N"], "gp120": ["D105N", "-109L", "-111D", "V144A", "A253T", "E265G", "N327-", "M345T"], "nef": ["D38A", "G83A"], "p24": ["P14A"], "rev": ["A54E"], "vif": ["N22H"]}, "labels": {"aa": "RT-p51: S123D, S251N; RT-p66: S123D, S251N; gp120: D105N, -109L, -111D, V144A, A253T, E265G, N327-, M345T; nef: D38A, G83A; p24: P14A; rev: A54E; vif: N22H"}}, "children": [{"name": "MT650723", "node_attrs": {"div": 0.17357, "accession": "MT650723", "clade_membership": {"value": "CRF114_0155"}, "country": {"value": "CN"}, "date": {"value": 2019.0}, "Strain_name": {"value": "C19271"}, "LANL_subtype": {"value": "CRF114_0155"}}, "branch_attrs": {"mutations": {"nuc": ["T362G", "C392T", "A411C", "G607A", "T614G", "A619G", "G747A", "G770A", "T858C", "A1050T", "G1173A", "G1313A", "A1461G", "G1640A", "A1775G", "-1783A", "-1784T", "-1785C", "A1786C", "G1794A", "T1796C", "C1826A", "A1841G", "C1985A", "T2011C", "A2108G", "G2318T", "G2447A", "A2627C", "T2631C", "A2665C", "G2675A", "A2788C", "G2808A", "G2878A", "G2881A", "A2974G", "G3192A", "A3218G", "G3226A", "C3266T", "G3538A", "A3583G", "A3643C", "A3897G", "A4069T", "T4126C", "G4195A", "A4228G", "A4397T", "G4573A", "T4585C", "T4656A", "G4673A", "G4708A", "C4771T", "G4817A", "C4820T", "A4862C", "A4878G", "C4899A", "C4914T", "G4949A", "A4990T", "T5128G", "A5150T", "A5223T", "A5247C", "T5293C", "T5412A", "A5431C", "A5534G", "A5535C", "G5563A", "A5581C", "G5620C", "G5720A", "A5748T", "G5755T", "G5775A", "T5787C", "T5836A", "C5881T", "T5884C", "C5944T", "C6026A", "T6030A", "A6157G", "T6166A", "T6171C", "G6175A", "C6178T", "T6181C", "A6182C", "C6184T", "A6188G", "A6194G", "A6195T", "A6197-", "T6199-", "C6201A", "T6204A", "-6205G", "A6208C", "T6211A", "A6212G", "T6213G", "A6217T", "G6218C", "A6219T", "-6225A", "-6226T", "A6254G", "G6325A", "A6338G", "-6340A", "A6354G", "G6425A", "A6443C", "T6465A", "C6469T", "T6590A", "A6597G", "C6637T", "A6664G", "A6692G", "A6716G", "T6759A", "G6779A", "C6807A", "T6808G", "A6818G", "C6824A", "A6825G", "T6835-", "A6848T", "T6928C", "T6946C", "T6952A", "-6953T", "-6955G", "-6956A", "-6957A", "-6958C", "-6959C", "-6960A", "-6961T", "-6962G", "-6963G", "-6964G", "-6965G", "-6966C", "-6967T", "-6968T", "-6990A", "T7003-", "C7006-", "C7008T", "T7014C", "T7150C", "G7152A", "C7153T", "A7157G", "A7158C", "-7160A", "-7161C", "-7162T", "-7163A", "-7164A", "G7168T", "G7190A", "A7274C", "C7463A", "T7466C", "C7510T", "C7597T", "T7604A", "T7622A", "G7689A", "G7712A", "A7713T", "C7732T", "G7734A", "C7926T", "T7931A", "A7936T", "T7939C", "A7947G", "A7998G", "A8000G", "A8018G", "C8037T", "C8092A", "C8171A", "G8180A", "G8181A", "T8213C", "A8222G", "C8223T", "G8273A", "C8274G", "T8287A", "A8288G", "G8350A", "A8370T", "C8382A", "G8405A", "T8440C", "T8477C", "A8486C", "A8531C", "A8643G"], "INT": ["N41S", "I208L"], "RT-p51": ["I5V", "V75L", "V118I", "I178L", "I179T", "E194K", "R238K", "R366K", "I375V", "M377I"], "RT-p66": ["I5V", "V75L", "V118I", "I178L", "I179T", "E194K", "R238K", "R366K", "I375V", "M377I", "E516D"], "gp120": ["L58M", "V59E", "-106A", "-107K", "M133I", "T134A", "E157R", "N167S", "A191T", "I197L", "M204K", "S246T", "N248S", "R280G", "M288V", "F302Y", "E309K", "T318K", "K322E", "H324S", "I332F", "N364-", "T385-", "I387T", "N435A", "-436T", "-437N", "E438D", "D446N", "K474Q"], "gp41": ["S101T", "S107T", "S129N", "E137I", "R144K", "T208I", "S210T", "E215G", "D232G", "R233G", "S239G", "A245V", "F263L", "L290I", "G293N", "F304L", "T307V", "A324R", "I329V"], "nef": ["S3N", "I10L", "P14T", "P24D", "V33A", "I101V"], "p17": ["K26H", "R91K", "D93E", "K95R"], "p2": ["Q6H", "I13V"], "p24": ["A6T", "T107S", "V148I"], "p6": ["V39I"], "pro": ["I15V", "P63T"], "rev": ["N7A", "F28Y", "T30S", "S31P", "Q51R", "E57G", "H82N", "V108D", "G111E"], "tat": ["N12K", "T19P", "K53S", "E63K", "I69L", "P73S", "I77T", "N80D"], "vif": ["L24I", "M29I", "R41K", "A62V", "R92S", "I98V", "H110Y", "Y135F", "M181R"], "vpr": ["H8Q", "N16Y", "H40L", "N48T"], "vpu": ["E5Q", "R38K", "R47S", "A50S", "D60E", "T61L", "D62A", "E63K", "A65V", "K66E", "L67M", "-68G", "V69-", "E70-", "M71-", "G72-", "D73-", "F74-", "D75-", "H76-", "W77-", "V78D", "G79F"]}, "labels": {"aa": "INT: N41S, I208L; RT-p51: I5V, V75L, V118I, I178L, I179T, E194K, R238K, R366K, I375V, M377I; RT-p66: I5V, V75L, V118I, I178L, I179T, E194K, R238K, R366K, I375V, M377I, E516D; gp120: L58M, V59E, -106A, -107K, M133I, T134A, E157R, N167S, A191T, I197L, M204K, S246T, N248S, R280G, M288V, F302Y, E309K, T318K, K322E, H324S, I332F, N364-, T385-, I387T, N435A, -436T, -437N, E438D, D446N, K474Q; gp41: S101T, S107T, S129N, E137I, R144K, T208I, S210T, E215G, D232G, R233G, S239G, A245V, F263L, L290I, G293N, F304L, T307V, A324R, I329V; nef: S3N, I10L, P14T, P24D, V33A, I101V; p17: K26H, R91K, D93E, K95R; p2: Q6H, I13V; p24: A6T, T107S, V148I; p6: V39I; pro: I15V, P63T; rev: N7A, F28Y, T30S, S31P, Q51R, E57G, H82N, V108D, G111E; tat: N12K, T19P, K53S, E63K, I69L, P73S, I77T, N80D; vif: L24I, M29I, R41K, A62V, R92S, I98V, H110Y, Y135F, M181R; vpr: H8Q, N16Y, H40L, N48T; vpu: E5Q, R38K, R47S, A50S, D60E, T61L, D62A, E63K, A65V, K66E, L67M, -68G, V69-, E70-, M71-, G72-, D73-, F74-, D75-, H76-, W77-, V78D, G79F"}}}, {"name": "MN654106", "node_attrs": {"div": 0.16745, "accession": "MN654106", "clade_membership": {"value": "CRF114_0155"}, "country": {"value": "CN"}, "date": {"value": 2019.0}, "Strain_name": {"value": "B19087"}, "LANL_subtype": {"value": "CRF114_0155"}}, "branch_attrs": {"mutations": {"nuc": ["T655C", "C774G", "C830T", "A1073G", "T1166C", "C1220T", "A1289T", "C1304A", "A1404G", "C1442A", "G1443A", "T1744C", "G1757A", "T1787A", "G2027A", "G2042A", "A2182G", "A2399C", "A2419G", "A2461G", "T2499C", "C2533T", "G2626A", "T2632C", "G2828A", "C2960T", "T3059A", "T3262C", "G3264A", "A3302C", "T3303A", "A3604G", "G3808C", "G3816A", "G3869A", "A3886G", "A3919G", "G3988A", "A4084G", "G4767A", "A4864G", "G4900A", "C5034T", "T5242C", "A5291G", "A5462T", "A5463T", "C5585G", "G5599A", "C5641T", "G5700A", "T5826C", "A5956T", "C6176T", "A6183G", "A6191T", "-6198A", "C6203A", "-6205A", "A6206G", "C6207G", "T6210A", "A6212C", "A6216C", "A6220T", "A6221G", "C6222A", "G6227-", "A6228-", "A6229-", "G6230-", "A6234G", "C6278A", "A6326G", "A6327G", "C6328A", "A6329G", "A6330G", "T6331C", "G6333A", "A6339G", "-6340T", "G6391A", "T6436C", "A6462G", "G6475A", "C6496T", "C6559T", "C6618A", "C6655A", "A6734G", "T6735A", "A6819G", "C6824T", "T6828-", "T6829-", "-6834A", "A6854G", "G6910A", "-6944C", "T6946A", "G6948A", "-6953G", "-6955A", "-6971A", "-6972C", "-6973C", "-6974A", "-6975T", "-6976A", "-6977G", "-6978A", "-6979G", "-6980G", "-6981G", "-6982G", "-6983C", "-6984T", "-6985T", "-6990G", "-7001A", "-7002A", "-7004G", "-7005G", "T7095C", "T7147C", "T7150G", "A7157T", "A7195G", "A7212G", "C7393T", "T7403C", "A7633T", "C7691A", "A7721G", "T7888G", "C7932T", "G7956A", "G8017C", "A8030C", "G8032T", "C8171T", "G8184A", "G8212A", "G8234A", "G8335A", "C8336A", "T8337A", "A8338T", "G8402A", "A8403G", "G8404A", "A8410C", "T8485C", "G8555A"], "INT": ["E11D", "R14K", "V32I"], "RT-p51": ["K102Q", "I135T", "E245K", "S322T", "R390K", "M403Q"], "RT-p66": ["K102Q", "I135T", "E245K", "S322T", "R390K", "M403Q"], "gp120": ["E34D", "-106V", "K127R", "Q142K", "E157G", "N159G", "K203R", "T255N", "S267R", "D294E", "K322R", "H324Y", "F325Y", "K334E", "S365G", "-367I", "-375E", "-376G", "-377L", "-378N", "-379G", "-380T", "-381N", "-382G", "I414T", "N432K", "N433-", "I447M", "N453S"], "gp41": ["M54L", "E110D", "Q130K", "N140D", "N195K", "S210F", "H211Q", "R218K", "T243P", "R294Q", "V311I", "L345N"], "nef": ["M20I", "R21E", "R22Q", "Q23A", "I48T"], "p17": ["K26N", "V107A"], "p2": ["V7M"], "p24": ["L15V", "S225G"], "p6": ["I21T", "H35Q", "P36-"], "pro": ["V77I", "V82I"], "rev": ["Q24E", "E57Q", "D61A", "A62S"], "tat": ["K29I", "P70R", "P75S", "I76N", "G83S"], "vif": ["E61K", "N93S", "R105Q"], "vpr": ["I63V"]}, "labels": {"aa": "INT: E11D, R14K, V32I; RT-p51: K102Q, I135T, E245K, S322T, R390K, M403Q; RT-p66: K102Q, I135T, E245K, S322T, R390K, M403Q; gp120: E34D, -106V, K127R, Q142K, E157G, N159G, K203R, T255N, S267R, D294E, K322R, H324Y, F325Y, K334E, S365G, -367I, -375E, -376G, -377L, -378N, -379G, -380T, -381N, -382G, I414T, N432K, N433-, I447M, N453S; gp41: M54L, E110D, Q130K, N140D, N195K, S210F, H211Q, R218K, T243P, R294Q, V311I, L345N; nef: M20I, R21E, R22Q, Q23A, I48T; p17: K26N, V107A; p2: V7M; p24: L15V, S225G; p6: I21T, H35Q, P36-; pro: V77I, V82I; rev: Q24E, E57Q, D61A, A62S; tat: K29I, P70R, P75S, I76N, G83S; vif: E61K, N93S, R105Q; vpr: I63V"}}}]}, {"name": "CRF114_0155_NODE_0000002", "node_attrs": {"div": 0.15682, "clade_membership": {"value": "CRF114_0155"}}, "branch_attrs": {"mutations": {"nuc": ["C583T", "T596C", "A1932G", "G1963A", "A2297G", "A4677G", "G4870A", "G5824A", "C6165G", "-6225A", "-6340G", "G6605A", "G6764C", "-6833A", "A6937C", "-7001A", "-7002A", "G7180A", "A7626T", "C7702A", "A7935G", "A8173G", "A8407G"], "RT-p51": ["S68G"], "RT-p66": ["S68G"], "gp120": ["N108-", "T110-", "I156M", "D251N", "E304Q", "K361N"], "gp41": ["Y108F", "D133E", "H211R"], "p17": ["A83V"], "pro": ["K45R"], "rev": ["V108A", "I109V"], "tat": ["I76D"], "vif": ["I31V", "S95N", "N186H"], "vpu": ["D73N"]}, "labels": {"aa": "RT-p51: S68G; RT-p66: S68G; gp120: N108-, T110-, I156M, D251N, E304Q, K361N; gp41: Y108F, D133E, H211R; p17: A83V; pro: K45R; rev: V108A, I109V; tat: I76D; vif: I31V, S95N, N186H; vpu: D73N"}}, "children": [{"name": "MN654107", "node_attrs": {"div": 0.17357, "accession": "MN654107", "clade_membership": {"value": "CRF114_0155"}, "country": {"value": "CN"}, "date": {"value": 2019.0}, "Strain_name": {"value": "B19155"}, "LANL_subtype": {"value": "CRF114_0155"}}, "branch_attrs": {"mutations": {"nuc": ["C434T", "C435T", "A599G", "G605A", "G747A", "G1090A", "A1404G", "C1442A", "C1446-", "A1447-", "A1448-", "T1449C", "C1450A", "T1451C", "A1452T", "A1454T", "A1456C", "T1457A", "-1458A", "-1459A", "-1460T", "A1495G", "A1497G", "A1525G", "T1550C", "A1657T", "G1719-", "A1720-", "C1721-", "T1722-", "G1723-", "G1724-", "G1725-", "G1726-", "-1728A", "-1729C", "-1730T", "A1731G", "T1732G", "A1736-", "G1737-", "G1738-", "G1739-", "G1740-", "A1741-", "A1742-", "A1743-", "T1744-", "A1745-", "A1746-", "C1747-", "C1748-", "T1749-", "C1750-", "C1751-", "T1752-", "G1753-", "T1754-", "C1755-", "C1756-", "G1757-", "A1758-", "A1759-", "G1760-", "T1864G", "C1960T", "G2007A", "G2027A", "C2456T", "A2627C", "A2685T", "A2902G", "A2985G", "A3224G", "A3265G", "T3418C", "A3521C", "A3529G", "C3692T", "G3736A", "C3793T", "A3834G", "G3877A", "A3896G", "A4071T", "C4078A", "A4112G", "A4145G", "C4174A", "A4182G", "G4276T", "C4288A", "T4585C", "G4673A", "G4760A", "T4840C", "G4861A", "A5049G", "A5056G", "T5091C", "A5142T", "A5150T", "G5153C", "T5203C", "C5221T", "T5237C", "T5430C", "A5534G", "A5556G", "T5602C", "G5619A", "A5622T", "G5652A", "C5653A", "G5718A", "A5746G", "T5808G", "G5839A", "G5848A", "T5851G", "C5860-", "T5861-", "T5862-", "A5863-", "G5864-", "A5865-", "C5881T", "A6167G", "T6169G", "G6170T", "T6172C", "C6176A", "T6177A", "T6181C", "A6183C", "C6186T", "A6187T", "C6189A", "A6195C", "C6196A", "-6198C", "T6199C", "C6202T", "C6203G", "-6205C", "C6207A", "A6209T", "T6210C", "T6213C", "A6214C", "A6216T", "A6220C", "-6226A", "A6266C", "C6278A", "A6318C", "A6322G", "A6327G", "T6331C", "G6345T", "T6412C", "C6599A", "G6628A", "A6648C", "A6694C", "A6714G", "G6743A", "A6744G", "C6807T", "G6809A", "-6834C", "T6838C", "T6849A", "C6858A", "C6859A", "A6891T", "A6945-", "T6946-", "A6947-", "G6948-", "A6949-", "A6950-", "C6951-", "T6952-", "G6954-", "-6974C", "-6975C", "-6976A", "-6977G", "-6978A", "-6979A", "-6990G", "C6991A", "-6994C", "-6995G", "-6996T", "-6997A", "-6998G", "-6999A", "-7000G", "-7004A", "-7005A", "G7123A", "G7152T", "C7153A", "A7155C", "A7159C", "-7160G", "-7161A", "-7162G", "-7163A", "-7164C", "G7190A", "A7255G", "G7269A", "A7275G", "G7390A", "G7478A", "C7510T", "G7534A", "T7625C", "A7800G", "T7888G", "C7929T", "C8092A", "A8093G", "A8193G", "T8213A", "G8255A", "A8272G", "C8274G", "C8336A", "A8397C", "A8486G", "G8518A", "A8536G", "A8584T", "A8622C"], "INT": ["K20R", "N41D", "Y99F", "I113V", "T124A", "Q136R", "E167D", "H171Q"], "RT-p51": ["H121Y", "S123G", "I178L", "Q197L", "E297G", "M377V"], "RT-p66": ["H121Y", "S123G", "I178L", "Q197L", "E297G", "M377V", "K476Q"], "gp120": ["L3N", "E4-", "N5-", "D105E", "M133I", "K138Q", "Q142K", "Q155P", "N159S", "R164I", "L249I", "E265A", "R280S", "Q287R", "D297S", "T318I", "A319T", "-326T", "N328-", "I332N", "P335Q", "H346L", "N364P", "S365E", "T366-", "-378N", "-379G", "-380T", "-381V", "-382E", "-383N", "-384N", "N433I", "N434T", "-436E", "-437T", "D446N", "R472K", "K474R"], "gp41": ["M54L", "V59I", "F108L", "N166S", "N195K", "P209L", "F263L", "I264V", "K297R", "F304I", "V318I", "A324G", "L345I"], "nef": ["Q23D", "I48M", "R59K", "E65G", "Y81F", "K94Q"], "p2": ["Q8H"], "p24": ["A6T", "S120N", "S225G"], "p6": ["D14-", "W15-", "G16-", "E20-", "I21-", "T22-", "S23-", "C24-", "P25-", "K27-"], "p7": ["K10R", "R11G", "K20R"], "pro": ["R70K", "V77I"], "rev": ["N7D", "K14R", "H82S"], "tat": ["K53R", "L74F"], "vif": ["M29I", "V85A", "R92K", "T155A", "K157R", "H186Y", "M189I"], "vpr": ["E13V", "N16Y", "E17Q", "Y45H"], "vpu": ["E5D", "L16I", "V78I", "D81N", "L82V"]}, "labels": {"aa": "INT: K20R, N41D, Y99F, I113V, T124A, Q136R, E167D, H171Q; RT-p51: H121Y, S123G, I178L, Q197L, E297G, M377V; RT-p66: H121Y, S123G, I178L, Q197L, E297G, M377V, K476Q; gp120: L3N, E4-, N5-, D105E, M133I, K138Q, Q142K, Q155P, N159S, R164I, L249I, E265A, R280S, Q287R, D297S, T318I, A319T, -326T, N328-, I332N, P335Q, H346L, N364P, S365E, T366-, -378N, -379G, -380T, -381V, -382E, -383N, -384N, N433I, N434T, -436E, -437T, D446N, R472K, K474R; gp41: M54L, V59I, F108L, N166S, N195K, P209L, F263L, I264V, K297R, F304I, V318I, A324G, L345I; nef: Q23D, I48M, R59K, E65G, Y81F, K94Q; p2: Q8H; p24: A6T, S120N, S225G; p6: D14-, W15-, G16-, E20-, I21-, T22-, S23-, C24-, P25-, K27-; p7: K10R, R11G, K20R; pro: R70K, V77I; rev: N7D, K14R, H82S; tat: K53R, L74F; vif: M29I, V85A, R92K, T155A, K157R, H186Y, M189I; vpr: E13V, N16Y, E17Q, Y45H; vpu: E5D, L16I, V78I, D81N, L82V"}}}, {"name": "MN654104", "node_attrs": {"div": 0.17337, "accession": "MN654104", "clade_membership": {"value": "CRF114_0155"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "A18003"}, "LANL_subtype": {"value": "CRF114_0155"}}, "branch_attrs": {"mutations": {"nuc": ["A512G", "G607A", "A619G", "G706A", "A708G", "C774A", "C851T", "T852A", "T885C", "G978A", "C1098T", "G1127A", "A1361C", "G1443A", "A1781G", "G1845A", "T2062C", "A2190T", "T2266C", "C2296T", "A2400G", "G2462A", "T2499G", "A2611G", "G2613C", "G2761A", "G2921A", "C2942A", "A3205C", "G3211A", "C3542T", "A3571G", "A3643C", "A3768G", "G3808T", "T3844C", "T3991C", "G4186A", "T4197C", "G4623A", "G4637A", "A4753T", "A4768G", "G4779A", "C4977T", "C4995T", "G5086A", "C5116T", "A5142C", "A5147C", "T5171C", "T5286C", "A5291C", "G5385A", "C5454T", "A5462G", "A5548C", "A5557G", "G5565A", "A5567C", "A5611T", "T5636C", "A5689T", "C5727A", "G5747C", "T5884C", "T6101C", "A6159C", "T6166C", "T6171C", "A6182G", "-6198A", "T6204A", "-6205T", "A6208C", "T6211A", "A6212G", "T6213G", "A6217T", "G6218C", "A6219T", "-6226T", "A6253G", "A6265T", "C6281A", "G6314A", "G6325C", "C6328T", "A6330G", "A6339T", "T6438A", "G6442A", "T6465C", "A6526G", "G6654A", "T6660C", "T6738C", "A6781G", "A6805T", "-6834A", "A6840G", "-6944A", "A6947G", "T6952C", "-6953G", "-6955G", "-6956C", "-6957T", "-6958T", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964T", "-6965A", "-6966C", "-6967T", "A6986-", "A6987-", "T6988-", "G6989-", "C6991-", "A6992-", "C6993-", "-7004G", "-7005G", "T7009C", "C7016A", "A7097C", "A7106C", "C7107T", "A7148T", "T7150A", "A7151T", "A7157T", "A7274C", "A7290G", "C7463A", "A7533G", "G7534T", "A7640G", "A7641G", "C7691A", "T7843C", "G7892A", "A7903G", "C7929A", "G8032A", "C8033T", "G8036A", "T8047C", "T8065C", "A8219G", "A8228G", "G8234A", "C8268T", "T8290C", "G8350A", "A8370T", "G8399A", "G8405A", "C8406A", "A8408G", "G8409C", "T8411A", "C8412G", "C8460T", "A8469G", "G8506A", "G8508A", "C8568T"], "INT": ["E11D", "I141T", "G283D", "D288N"], "RT-p51": ["K32I", "K102R", "I135R", "R173T", "V276I", "L283I", "E370D"], "RT-p66": ["K32I", "K102R", "I135R", "R173T", "V276I", "L283I", "E370D", "H483Y", "E516D", "K558R"], "gp120": ["N102T", "L137F", "Q143K", "V154I", "N159D", "F195Y", "M204T", "S267N", "I269T", "D294A", "K329R", "-367N", "-368G", "L388I", "I415L", "T418L", "K474Q", "N479S"], "gp41": ["K77S", "N113G", "Q130K", "V197I", "P209H", "L244F", "A245T", "T306A", "I309V", "V311I", "A322V"], "nef": ["S3N", "I10L", "P24A", "H40Y", "I43V", "S55N", "V56I"], "p17": ["R91K", "K95R", "S124N", "S125G"], "p2": ["V7S", "Q8T", "-9N", "S10-", "T11-", "N12-"], "p24": ["L15I", "S41T", "V83I", "P123S"], "pro": ["G16E"], "rev": ["E11D", "R17K", "I18L", "A62I", "C63Y", "S67P", "F73L"], "tat": ["K29R", "T58P", "S61G", "D64A", "L74I"], "vif": ["V13I", "N56I", "E61G", "V65I", "H131Y", "P137S", "R167K", "P177L"], "vpr": ["E13A", "N15H", "I61T", "I63L", "G94S"], "vpu": ["T2S", "V10A", "I28L", "D40E", "R47T"]}, "labels": {"aa": "INT: E11D, I141T, G283D, D288N; RT-p51: K32I, K102R, I135R, R173T, V276I, L283I, E370D; RT-p66: K32I, K102R, I135R, R173T, V276I, L283I, E370D, H483Y, E516D, K558R; gp120: N102T, L137F, Q143K, V154I, N159D, F195Y, M204T, S267N, I269T, D294A, K329R, -367N, -368G, L388I, I415L, T418L, K474Q, N479S; gp41: K77S, N113G, Q130K, V197I, P209H, L244F, A245T, T306A, I309V, V311I, A322V; nef: S3N, I10L, P24A, H40Y, I43V, S55N, V56I; p17: R91K, K95R, S124N, S125G; p2: V7S, Q8T, -9N, S10-, T11-, N12-; p24: L15I, S41T, V83I, P123S; pro: G16E; rev: E11D, R17K, I18L, A62I, C63Y, S67P, F73L; tat: K29R, T58P, S61G, D64A, L74I; vif: V13I, N56I, E61G, V65I, H131Y, P137S, R167K, P177L; vpr: E13A, N15H, I61T, I63L, G94S; vpu: T2S, V10A, I28L, D40E, R47T"}}}]}]}, {"name": "results/subtype_trees/CRF55_01B.nwk", "node_attrs": {"div": 0.14928, "clade_membership": {"value": "CRF55_01B"}}, "branch_attrs": {"mutations": {"nuc": ["A159T", "C160T", "T161A", "-162T", "T662G", "G693A", "T979C", "G1090A", "A1253G", "A1277G", "T1296C", "G1443A", "C1449-", "T1451-", "A1495G", "G1498A", "C1556A", "G1619A", "A1642G", "A1644C", "G1673A", "A1718G", "C1721T", "-1746T", "C1751A", "T1752C", "C1755-", "T1756-", "G1757-", "A1770G", "A1780G", "-1783C", "C1785T", "T1791G", "C1792T", "G1845A", "A1927G", "A1966C", "G2293A", "G2311A", "A2368G", "T2499G", "C2521T", "G2578A", "C2605T", "A2615C", "T2631A", "T2632A", "C2653T", "A2710G", "C2720T", "G2727A", "T2735C", "A2752G", "G2755A", "G2764A", "T2770C", "A2788T", "C2806T", "C2818A", "A2829C", "A2830G", "T2863C", "G2869A", "A2872G", "T2917C", "A2923G", "T2935C", "A2938G", "G2980A", "A3154G", "A3190C", "G3211A", "A3258G", "C3271T", "A3280G", "T3303C", "G3304A", "G3316A", "T3319C", "T3331C", "A3334G", "C3359T", "T3368C", "C3376T", "A3379G", "A3391G", "G3409A", "G3435A", "T3436C", "G3448A", "C3449T", "G3463A", "C3469T", "G3477A", "A3493T", "T3496C", "G3508C", "A3520G", "T3535A", "G3538A", "C3541T", "C3542T", "C3550T", "T3551C", "T3577C", "A3592G", "G3616A", "C3628T", "G3630A", "G3631A", "A3643G", "G3644C", "C3649T", "C3652T", "G3665A", "C3668T", "A3676C", "T3695G", "G3718A", "C3751T", "A3757T", "C3763T", "G3766A", "G3787A", "A3808C", "A3814G", "G3816A", "T3820C", "T4126C", "A4951G", "A5033T", "T5072C", "A5099G", "T5125C", "C5146A", "T5194A", "A5200G", "T5237C", "T5260C", "A5336G", "A5499G", "A5560C", "A5563C", "A5594G", "G5599A", "T5602A", "T5636C", "A5655G", "G5699A", "G5775A", "G5791-", "A5792-", "T5793-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "G5799-", "C5801A", "A5803G", "A5805G", "C5806T", "T5808G", "A5817T", "T5835C", "T5851G", "G5858A", "A5935T", "C6025T", "C6052-", "A6053-", "T6054-", "G6076T", "G6085T", "T6171C", "-6172G", "T6181A", "A6194G", "-6198C", "-6205G", "-6216C", "G6218T", "-6220G", "A6221G", "-6222A", "A6262G", "C6263A", "G6280T", "A6303G", "A6318C", "G6333A", "A6339G", "-6340T", "T6412C", "T6446C", "A6448C", "T6487C", "T6545C", "A6595G", "A6638G", "T6668G", "G6693C", "A6751G", "A6791G", "G6802A", "-6833A", "-6834A", "A6840G", "C6843A", "C6938T", "-6976T", "-6981G", "A7040G", "T7090G", "G7534A", "A7626T", "C7642A", "C7691A", "A7692C", "G7726A", "T7747G", "T7774C", "T7844A", "G7890A", "T7912A", "G7957A", "C8095A", "C8171T", "A8746T", "A8809C", "C8825T", "G8864T", "A8873G", "G8875A", "G8894A", "A8933G", "A9026-", "T9028-", "T9097G"], "INT": ["E11D", "R14K"], "RT-p51": ["I135R", "K174Q", "E177D", "V179E", "F214L", "E245A", "K388R", "M403T"], "RT-p66": ["I135R", "K174Q", "E177D", "V179E", "F214L", "E245A", "K388R", "M403T", "S447N", "R461K", "E471D", "H480Q", "H483Y", "R512K", "I517L", "E524K", "K527S", "S534A"], "gp120": ["A2T", "D21E", "N66K", "M67-", "E74D", "Q77H", "-107N", "K127R", "L137I", "Q142H", "Q155P", "K262E", "G307E", "T313V", "-369N", "-371T", "I396V", "S412R"], "gp41": ["Y108F", "D113E", "Q130T", "D148E", "L242F", "T243S"], "nef": ["R22Q", "Q125H", "D156A", "E174D", "R178K", "L198K"], "p1": ["K4R", "I5L"], "p17": ["N109K", "A120T"], "p2": ["A7M"], "p24": ["S120N"], "p6": ["K31E", "E34G", "P36Y"], "p7": ["K10R", "R11K"], "pro": ["G16E"], "rev": ["A37T", "L83I"], "tat": ["S62R", "K63Q", "G83D"], "vif": ["K122R", "R158K", "I180T", "P187H"], "vpr": ["Y45H"], "vpu": ["V10A", "R31K", "K66Q", "E70D", "L82V"]}, "labels": {"aa": "INT: E11D, R14K; RT-p51: I135R, K174Q, E177D, V179E, F214L, E245A, K388R, M403T; RT-p66: I135R, K174Q, E177D, V179E, F214L, E245A, K388R, M403T, S447N, R461K, E471D, H480Q, H483Y, R512K, I517L, E524K, K527S, S534A; gp120: A2T, D21E, N66K, M67-, E74D, Q77H, -107N, K127R, L137I, Q142H, Q155P, K262E, G307E, T313V, -369N, -371T, I396V, S412R; gp41: Y108F, D113E, Q130T, D148E, L242F, T243S; nef: R22Q, Q125H, D156A, E174D, R178K, L198K; p1: K4R, I5L; p17: N109K, A120T; p2: A7M; p24: S120N; p6: K31E, E34G, P36Y; p7: K10R, R11K; pro: G16E; rev: A37T, L83I; tat: S62R, K63Q, G83D; vif: K122R, R158K, I180T, P187H; vpr: Y45H; vpu: V10A, R31K, K66Q, E70D, L82V", "clade": "CRF55_01B"}}, "children": [{"name": "CRF55_01B_NODE_0000001", "node_attrs": {"div": 0.14937, "clade_membership": {"value": "CRF55_01B"}}, "branch_attrs": {"mutations": {"gp120": ["I332N", "S365D"]}, "labels": {"aa": "gp120: I332N, S365D"}}, "children": [{"name": "MW110767", "node_attrs": {"div": 0.17887, "accession": "MW110767", "clade_membership": {"value": "CRF55_01B"}, "country": {"value": "CN"}, "date": {"value": 2015.0}, "Strain_name": {"value": "BL1947_00"}, "LANL_subtype": {"value": "CRF55_01B"}}, "branch_attrs": {"mutations": {"nuc": ["-217T", "A303C", "A485G", "A566G", "G608A", "G615A", "A638G", "C645T", "G662T", "G667A", "C679A", "A705G", "G706T", "A715C", "C731T", "T782C", "A878G", "C979T", "G1127A", "C1137T", "A1259G", "C1296T", "C1442T", "A1443G", "T1444C", "G1445A", "A1447C", "A1448-", "G1452-", "A1454T", "A1455G", "A1456C", "T1457A", "-1458A", "-1459C", "-1460T", "G1495A", "A1496G", "A1525G", "A1619G", "G1770A", "A1771G", "G1780A", "A1786C", "G1835A", "C1966T", "T2035C", "A2131G", "A2221G", "C2236T", "A2242G", "A2305G", "T2323C", "A2329G", "T2369C", "A2396C", "T2443C", "A2508G", "T2597C", "G2686A", "G2830A", "A2902G", "G2909C", "C2968T", "T3052C", "G3209A", "G3258A", "G3264A", "C3436T", "T3550C", "T3559C", "A3562G", "C3589T", "A3665C", "A3675G", "A3684G", "A3718G", "G3834A", "G3866A", "G3869A", "A3896G", "G3935A", "T3970C", "T4042C", "G4109A", "T4110C", "C4117T", "C4126T", "T4129C", "C4141T", "G4145A", "T4147C", "G4148A", "A4150G", "A4156G", "A4159C", "C4174G", "A4175G", "A4176G", "T4177G", "G4178A", "C4181A", "A4182C", "A4183G", "C4198T", "C4501T", "G4573A", "G4642A", "G4673A", "T4674C", "A4688G", "A4766G", "G4855A", "A4865C", "A4878T", "A4882C", "C4914T", "T5128A", "A5142T", "T5162C", "C5168T", "G5170A", "G5176A", "G5236A", "A5291G", "T5412C", "A5463T", "C5514A", "C5569T", "A5575G", "C5578T", "C5579T", "A5581G", "C5584T", "A5613C", "-5809G", "-5810C", "-5811T", "T5841G", "T5917A", "A5926G", "G5972A", "G6029A", "T6064C", "T6127C", "A6136G", "A6157G", "C6166A", "G6167T", "A6168C", "G6170A", "C6171T", "A6176T", "C6178A", "A6185-", "A6186G", "A6188G", "C6190T", "G6194T", "C6196T", "T6199A", "A6200T", "-6201C", "-6202T", "-6203G", "-6204C", "G6205T", "-6207A", "A6208C", "A6209T", "T6211A", "A6212G", "T6213G", "C6216A", "A6217T", "A6219T", "G6220A", "G6221A", "A6222C", "-6225A", "-6226T", "A6242T", "A6251G", "G6262A", "A6263C", "T6280G", "C6281A", "G6283T", "C6287T", "G6303C", "A6311C", "C6318A", "G6325T", "G6336A", "A6425G", "T6445C", "A6471C", "C6483T", "A6489C", "C6496T", "G6605A", "C6669G", "T6676C", "A6692C", "T6694C", "A6734G", "T6735A", "A6736T", "T6745C", "G6751A", "A6767G", "G6774A", "A6780G", "A6785T", "G6788A", "C6792T", "T6793C", "A6799G", "C6807A", "T6808G", "C6810G", "A6811T", "A6813C", "A6818G", "G6821A", "C6826A", "T6829C", "T6835A", "A6843C", "T6849A", "C6858A", "A6859C", "A6877G", "C6925T", "C6933G", "A6934C", "T6938C", "A6947G", "G6948A", "-6955C", "-6956A", "-6957T", "-6958G", "-6959A", "-6960A", "-6961T", "-6962G", "-6963A", "-6964A", "-6965A", "-6966C", "-6967C", "-6975A", "-6977A", "-6978A", "-6979A", "-6980G", "-6982G", "A6986-", "A6987-", "T6988-", "C6991-", "A6992-", "C6993-", "-6997A", "-6998T", "-6999G", "-7000T", "-7001A", "-7002A", "-7004G", "-7005G", "C7008G", "G7040A", "A7095G", "A7096C", "A7097G", "G7106T", "T7144G", "A7152C", "A7155C", "A7160G", "-7164C", "C7165A", "C7170T", "C7201A", "A7256G", "G7291A", "C7463A", "G7508C", "G7513A", "G7658C", "T7708C", "A7735C", "A7741G", "G7744A", "T7748C", "A7782C", "T7888C", "T7918G", "C7921T", "C7929A", "T7939G", "G8029A", "G8055A", "G8185A", "T8205G", "T8206C", "C8223T", "G8239A", "G8264A", "C8274T", "G8281C", "C8336G", "A8349G", "G8387A", "A8407G", "C8416T", "T8440C", "T8456A", "A8505T", "G8508A", "T8509C", "G8516A", "G8518A", "G8555A", "A8584T", "A8647G", "C8648G", "G8654A", "A8657G", "C8675T", "T8684C", "T8699C", "T8740C", "G8794C", "C8934A", "T8935A", "-9026G", "G9132A"], "INT": ["R20K", "V31I", "V32I", "N41D", "V54I", "V112T", "A124T", "A125T", "N134G", "V135I", "Q136T"], "RT-p51": ["K101Q", "E138G", "A272P", "V372I", "R388K", "R390K"], "RT-p66": ["K101Q", "E138G", "A272P", "V372I", "R388K", "R390K", "K524Q", "K530R"], "gp120": ["V40I", "E59K", "D105S", "-112A", "-113N", "-114C", "-115T", "-116S", "-117A", "-118N", "-119L", "-120G", "-121N", "-122L", "-123T", "-124D", "T130S", "M133V", "I137L", "H142Q", "Q143N", "H145Y", "K150T", "I153L", "P155Q", "S161N", "T191A", "N206T", "P210L", "K212T", "D251N", "S272G", "T280P", "I305V", "K309R", "N311Y", "E312K", "T318K", "A319G", "K320T", "K322E", "E323K", "H324Q", "-326K", "N328R", "K329-", "P335H", "T360S", "-367C", "-368M", "-370E", "T385-", "V396I", "N414S", "I415V", "V418L", "N433T", "N434T", "T436D", "N437T", "T439I", "D449E", "I468V"], "gp41": ["V69L", "E119Q", "K144N", "N160T"], "nef": ["S3G", "Q22R", "P25L", "V33A", "D38E", "S55C", "V56T", "R59K", "Y81F", "Y102W", "I133T", "Y135F", "R151T"], "p17": ["V94I", "K109N", "S111N", "T115K", "S124V", "Q127P"], "p2": ["N12T"], "p6": ["E31R", "G34E", "H35P", "Y36R", "P38V"], "p7": ["R10K", "K20R"], "pro": ["V13I"], "rev": ["S31A", "G113R"], "tat": ["K29N", "H65Y", "N67D", "P68F", "I69V", "P70S", "L74I", "I77S"], "vif": ["R19K", "M29I", "Y30H", "R90K", "I98L", "D99A", "H110Y", "M181K", "N186Y"], "vpr": ["H8Q", "E13V", "I63V"]}, "labels": {"aa": "INT: R20K, V31I, V32I, N41D, V54I, V112T, A124T, A125T, N134G, V135I, Q136T; RT-p51: K101Q, E138G, A272P, V372I, R388K, R390K; RT-p66: K101Q, E138G, A272P, V372I, R388K, R390K, K524Q, K530R; gp120: V40I, E59K, D105S, -112A, -113N, -114C, -115T, -116S, -117A, -118N, -119L, -120G, -121N, -122L, -123T, -124D, T130S, M133V, I137L, H142Q, Q143N, H145Y, K150T, I153L, P155Q, S161N, T191A, N206T, P210L, K212T, D251N, S272G, T280P, I305V, K309R, N311Y, E312K, T318K, A319G, K320T, K322E, E323K, H324Q, -326K, N328R, K329-, P335H, T360S, -367C, -368M, -370E, T385-, V396I, N414S, I415V, V418L, N433T, N434T, T436D, N437T, T439I, D449E, I468V; gp41: V69L, E119Q, K144N, N160T; nef: S3G, Q22R, P25L, V33A, D38E, S55C, V56T, R59K, Y81F, Y102W, I133T, Y135F, R151T; p17: V94I, K109N, S111N, T115K, S124V, Q127P; p2: N12T; p6: E31R, G34E, H35P, Y36R, P38V; p7: R10K, K20R; pro: V13I; rev: S31A, G113R; tat: K29N, H65Y, N67D, P68F, I69V, P70S, L74I, I77S; vif: R19K, M29I, Y30H, R90K, I98L, D99A, H110Y, M181K, N186Y; vpr: H8Q, E13V, I63V"}}}, {"name": "MT611506", "node_attrs": {"div": 0.17877, "accession": "MT611506", "clade_membership": {"value": "CRF55_01B"}, "country": {"value": "CN"}, "date": {"value": 2018.0}, "Strain_name": {"value": "JX_GZ_53_M_SH_7"}, "LANL_subtype": {"value": "CRF55_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T380A", "A412G", "G413C", "A421C", "C426G", "C435A", "A461C", "A495G", "C558A", "T596C", "A663G", "T695C", "C771G", "T774G", "A785G", "G866A", "G978A", "A980C", "T1094C", "G1127A", "G1452T", "A1454T", "A1455G", "A1456C", "T1457A", "-1458A", "-1459A", "-1460T", "A1492C", "C1536T", "A1562G", "A1657G", "G1718A", "C1783T", "G1791A", "T1795C", "G1901A", "G1927A", "G1968A", "G2008A", "G2042A", "A2152T", "A2161G", "A2194T", "A2233G", "C2296T", "G2332A", "C2335T", "G2426A", "T2443C", "C2464T", "A2512G", "T2719C", "T2724C", "A2727G", "T2737C", "G2761A", "T2800C", "C2829T", "C2848T", "A2918C", "C2935T", "G2938A", "A2986G", "T3002C", "G3154A", "G3398A", "A3409G", "G3422A", "G3442A", "A3674G", "C4006T", "A4063G", "C4162A", "A4183T", "A4643G", "T4674C", "A4677G", "A4726G", "C4761G", "C4826T", "C4902T", "C4911T", "C4937A", "G4951A", "G4982A", "A5045G", "T5197C", "C5215A", "C5237T", "C5482A", "G5499A", "A5555C", "G5556A", "A5557G", "C5559T", "C5579T", "G5620C", "A5631C", "G5711A", "G5717A", "A5718G", "A5784G", "-5791G", "-5792A", "-5793T", "-5794G", "-5795A", "-5796A", "-5797T", "-5798T", "-5799G", "A5801C", "G5803C", "G5805A", "T5806C", "G5808T", "G5864A", "C5869T", "G5915A", "T5935A", "T5953G", "T6023C", "A6024C", "T6025C", "A6030T", "-6052C", "-6053A", "-6054T", "A6066G", "T6072C", "T6076G", "T6085G", "G6088A", "C6097T", "T6139G", "T6142C", "C6145T", "A6158C", "T6163C", "C6165A", "C6166T", "A6168C", "G6170A", "A6173T", "A6174T", "C6178T", "G6179A", "A6180C", "A6181C", "C6189G", "C6190A", "G6195C", "A6200-", "-6207T", "T6210C", "G6224A", "-6225T", "-6226A", "G6234A", "A6320C", "A6326G", "A6327C", "T6328A", "A6333G", "A6338G", "G6339A", "T6340G", "C6446T", "G6532A", "C6545T", "C6559T", "G6575A", "G6605A", "C6607T", "C6618T", "G6638A", "G6668T", "A6689G", "C6693G", "T6694A", "A6712C", "A6718G", "A6725G", "A6734G", "T6735A", "A6736C", "A6767G", "G6791A", "A6799T", "A6802G", "G6841C", "A6844T", "T6849A", "A6937T", "G6940A", "A6944C", "A6945C", "G6948A", "A6950G", "C6951A", "T6952C", "T6953-", "G6954-", "-6971A", "-6972C", "-6973T", "-6974A", "-6975G", "T6976C", "-6977A", "-6978A", "-6979A", "-6980C", "G6981T", "-6982T", "-6983T", "-6984C", "-6985A", "-6989G", "-6990G", "-6994T", "T7003-", "C7006-", "A7007-", "C7008-", "T7009-", "G7027A", "G7067A", "A7088C", "G7089A", "A7096C", "T7102C", "G7132A", "A7149T", "T7150C", "A7154G", "A7155T", "T7156A", "A7158C", "A7163-", "C7165-", "T7180G", "G7190A", "G7212A", "A7225G", "C7238G", "G7276A", "G7289A", "G7291T", "G7366A", "G7441A", "T7466C", "A7534G", "G7589A", "C7590A", "A7621G", "T7626A", "G7640A", "A7642C", "T7656C", "A7672G", "G7677A", "C7690T", "A7696C", "A7701G", "A7726G", "G7747T", "G7750A", "T7762C", "C7774T", "A7796T", "A7820T", "G7831A", "A7844T", "A7890G", "A7912T", "C7926A", "T7930C", "C7932A", "A7935C", "T7936A", "C7937A", "A7938C", "T7939A", "A7957G", "A7964G", "T7968C", "A7974G", "G7977A", "G7987C", "C8004T", "C8009A", "G8032T", "C8037T", "G8038C", "A8050C", "C8063A", "G8105A", "G8181C", "T8196A", "A8222G", "G8234A", "G8254T", "G8255A", "G8264A", "C8268T", "G8317A", "C8320T", "G8388A", "G8393A", "A8396C", "G8508A", "G8528A", "A8643G"], "INT": ["Q136H"], "RT-p51": ["V111I", "L210S", "K211R", "A245V", "K275Q", "V435I"], "RT-p66": ["V111I", "L210S", "K211R", "A245V", "K275Q", "V435I", "D443N", "S527D"], "gp120": ["D4N", "E21N", "H33Q", "Y57P", "E59V", "K66N", "-67M", "N71S", "V73A", "D74E", "H77Q", "N102H", "D105T", "-106N", "N107R", "-109A", "R127K", "K150R", "I156L", "D157E", "N158A", "N160S", "S162E", "L198F", "E241K", "D251N", "T255I", "E262K", "I279V", "T280R", "R291G", "I305V", "E307G", "V313T", "K315N", "K329S", "T330N", "K361N", "-367S", "-368K", "N369L", "-370S", "T371N", "-372G", "A405T", "R412Q", "N432I", "N433-", "N435V", "D446N", "S453N", "Q462E", "E479N"], "gp41": ["M54L", "A96N", "F108Y", "E113N", "I118T", "S125N", "D133G", "E148D", "T165S", "I173L", "M176I", "T208N"], "nef": ["V16I", "E18D", "V56I", "I101V"], "p1": ["N9S"], "p17": ["K26S", "Y29S", "L31V", "L34I", "E42D", "T54A", "L75I", "K110E", "T120A", "G121T", "A122T", "S124A"], "p2": ["Q6H", "-10S"], "p24": ["P14A", "L15V", "V83T"], "p6": ["H35L", "V39I"], "p7": ["Q9P"], "pro": ["D35N", "R57K", "V82I"], "rev": ["A15V", "N26K"], "tat": ["L36I", "Q60P", "S61G", "P68L", "P73T", "L74P", "P75T", "I76Q", "I77Q"], "vif": ["Y30H", "I31V", "L59V", "N93K", "D117E", "R122K"], "vpr": ["H45Y"], "vpu": ["E5Q", "R35K", "R37K"]}, "labels": {"aa": "INT: Q136H; RT-p51: V111I, L210S, K211R, A245V, K275Q, V435I; RT-p66: V111I, L210S, K211R, A245V, K275Q, V435I, D443N, S527D; gp120: D4N, E21N, H33Q, Y57P, E59V, K66N, -67M, N71S, V73A, D74E, H77Q, N102H, D105T, -106N, N107R, -109A, R127K, K150R, I156L, D157E, N158A, N160S, S162E, L198F, E241K, D251N, T255I, E262K, I279V, T280R, R291G, I305V, E307G, V313T, K315N, K329S, T330N, K361N, -367S, -368K, N369L, -370S, T371N, -372G, A405T, R412Q, N432I, N433-, N435V, D446N, S453N, Q462E, E479N; gp41: M54L, A96N, F108Y, E113N, I118T, S125N, D133G, E148D, T165S, I173L, M176I, T208N; nef: V16I, E18D, V56I, I101V; p1: N9S; p17: K26S, Y29S, L31V, L34I, E42D, T54A, L75I, K110E, T120A, G121T, A122T, S124A; p2: Q6H, -10S; p24: P14A, L15V, V83T; p6: H35L, V39I; p7: Q9P; pro: D35N, R57K, V82I; rev: A15V, N26K; tat: L36I, Q60P, S61G, P68L, P73T, L74P, P75T, I76Q, I77Q; vif: Y30H, I31V, L59V, N93K, D117E, R122K; vpr: H45Y; vpu: E5Q, R35K, R37K"}}}]}, {"name": "CRF55_01B_NODE_0000002", "node_attrs": {"div": 0.15535, "clade_membership": {"value": "CRF55_01B"}}, "branch_attrs": {"mutations": {"nuc": ["-1450C", "-1451T", "T3962C", "A5784T", "-5809G", "-5810C", "-5811T", "T5917G", "A5955T", "C5974T", "A6013G", "G6172T", "A6186C", "T6187A", "T6193A", "-6202A", "A6324G", "T6331A", "G6647A", "A6759T", "G6766A", "A6779G", "T6787G", "A6837C", "G6840C", "C6875T", "G6910A", "-6955G", "-6956A", "-6957T", "-6958A", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964T", "-6965A", "-6966C", "-6967T", "-6968T", "-6969G", "-6970G", "-6971A", "-6982A", "-6983G", "-6984A", "-6985T", "-6989A", "-6990A", "-6995A", "-6996T", "-6997G", "-6998G", "-6999G", "-7001A", "-7002A", "-7004A", "G7058A", "T7059C", "A7063G", "G7090A", "A7094C", "A7095C", "C7127T", "A7158G", "T7159G", "-7164A", "G7168A", "C7702T", "A7885G", "G8030T", "T8265C", "T8759C", "A8762G", "G8818A", "G9027A", "-9028G"], "gp120": ["E34V", "-106A", "-109Q", "-111T", "D157G", "N159E", "E265K", "S272A", "Y302F", "K309E", "N311K", "-326N", "N327T", "N328T", "T330-", "-367W", "-368I", "-370G", "-372W", "-378N", "-380T", "-381M", "-382G", "-383N", "V402T", "N414P", "N435G"], "gp41": ["L181I", "R196K"], "nef": ["G159E"]}, "labels": {"aa": "gp120: E34V, -106A, -109Q, -111T, D157G, N159E, E265K, S272A, Y302F, K309E, N311K, -326N, N327T, N328T, T330-, -367W, -368I, -370G, -372W, -378N, -380T, -381M, -382G, -383N, V402T, N414P, N435G; gp41: L181I, R196K; nef: G159E"}}, "children": [{"name": "JX574662", "node_attrs": {"div": 0.16987999999999998, "accession": "JX574662", "clade_membership": {"value": "CRF55_01B"}, "country": {"value": "CN"}, "date": {"value": 2011.0}, "Strain_name": {"value": "GDDG318"}, "LANL_subtype": {"value": "CRF55_01B"}}, "branch_attrs": {"mutations": {"nuc": ["G361C", "T571A", "C602T", "A878G", "A899G", "G956T", "T962A", "A968C", "A980C", "C1322T", "C1442A", "-1449C", "T1583C", "G1640A", 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"S95R", "D113N"], "vpu": ["K44E"]}, "labels": {"aa": "INT: K14R, D55G, I84V, V112T; RT-p51: K102R; RT-p66: K102R, K524Q, L525M, K530R; gp120: V37M, D85E, N102K, D105N, N107K, Q109I, T111D, H142Q, V217I, D251N, E262N, K265T, K307R, A319S, E323G, T328E, L341V, G370D, -374D, -375E, -376G, -377V, -379G, -384N, T385S, I387F, L388I, N433S, I463L, I468V; gp41: M54L, V69L, A96N, E113Q, T136M, N166K, F188L, F242L, S243P, E272K, R294Q, S302A, T307I, W326G, A343S; nef: R21K, P25S, Y81F, K104T, I133V, A156T, N157T, I194R, K198L; p17: A83V; p2: M7S, Q8T, -9N, A11-, N12-; p24: V83A; p6: N14D, E31K, Y36R; pro: V13I, K70R; rev: L12I, S61A, E87K, G90E; tat: Q17K, T58N, K71E; vif: L59I, N93T, S95R, D113N; vpu: K44E"}}}, {"name": "JF340054", "node_attrs": {"div": 0.17886, "accession": "JF340054", "clade_membership": {"value": "CRF55_01B"}, "country": {"value": "CN"}, "date": {"value": 2008.0}, "Strain_name": {"value": "08CYM047"}, "LANL_subtype": {"value": "CRF55_01B"}}, "branch_attrs": {"mutations": 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vpr: L20I; vpu: R47G"}}}]}]}]}]}]}, {"name": "NODE_0000720", "node_attrs": {"div": 0.10916999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G697A", "G709A", "A1781-", "G2311A", "G2727A", "G2909C", "T4702C", "G5036A", "G5065A", "T5125C", "A5246G", "G5599A", "T5602A", "T6184C", "G6392A", "A7040G", "G7269A", "T7939C", "C8037T", "G8329A", "T8701A"], "RT-p51": ["A272P"], "RT-p66": ["A272P"], "gp120": ["K127R", "K300Q", "-378N", "I396V", "R472K"], "nef": ["F120Y"], "p17": ["G121D", "S125N"], "rev": ["S31P"], "tat": ["I77T"], "vif": ["F39S", "R160K", "I180T"], "vpr": ["N48D"]}, "labels": {"aa": "RT-p51: A272P; RT-p66: A272P; gp120: K127R, K300Q, -378N, I396V, R472K; nef: F120Y; p17: G121D, S125N; rev: S31P; tat: I77T; vif: F39S, R160K, I180T; vpr: N48D"}}, "children": [{"name": "results/subtype_trees/CRF101_01B.nwk", "node_attrs": {"div": 0.14175, "clade_membership": {"value": "CRF101_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T201C", "A215-", "A216-", "A386G", "C399A", "G428A", "A452G", "T456C", "G458A", "A462C", "T485G", "A503C", "C507A", "A508G", "A516C", "A518G", "G519C", "T525C", "G530A", "T531C", "C535G", "T536C", "C539T", "A540C", "T572C", "A576G", "G592A", "G593T", "A599G", "C602T", "C603A", "A604G", "A605C", "T636A", "T655A", "A656G", "T662C", "G665A", "C668T", "C669A", "C672A", "A678G", "G686A", "G687A", "G706A", "A714C", "A716G", "T774A", "T858C", "A968C", "A1097C", "G1271A", "C1280T", "G1313A", "T1427C", "C1440A", "A1442T", "T1451G", "-1458A", "-1459T", "-1460A", "A1463G", "A1642G", "A1644C", "A1656C", "G1731A", "A1742G", "A1743C", "C1745T", "-1746T", "-1747C", "-1748T", "C1753-", "-1781C", "-1783T", "C1786A", "T1791C", "C1792T", "A1841G", "A1849G", "A1918T", "G1963A", "G2042A", "A2126T", "A2127C", "G2287A", "A2290G", "T2632C", "C2653T", "A2699G", "G2704A", "G2707A", "A2710G", "A2734G", "C2740T", "G2926A", "A2929G", "G2980A", "A3165G", "A3167G", "A3190C", "A3279G", "A3283G", "G3538C", "G3715A", "T3904C", "T4126C", "C4144T", "A4495G", "A4816G", "A4864C", "A4900G", "T4910C", "A4951G", "C4977A", "A4988C", "C5006T", "A5007C", "T5147C", "T5162C", "T5224C", "A5249C", "A5285G", "T5292C", "C5425A", "C5482T", "C5514A", "G5668A", "A5733G", "G5734A", "G5747C", "A5781G", "T5808G", "G5872A", "T5917A", "C6026A", "T6072C", "T6115C", "T6134C", "T6169C", "-6170A", "-6174C", "T6181G", "A6200-", "A6206-", "T6210A", "A6221G", "G6224-", "G6227-", "A6228-", "A6229-", "G6230-", "T6242A", "C6263A", "A6281C", "T6322A", "A6324G", "A6335G", "A6338G", "-6340G", "G6345T", "A6352C", "T6364C", "G6391A", "A6489C", "A6573G", "G6693C", "A6706G", "A6751G", "A6752C", "A6759T", "A6767G", "A6775G", "A6797G", "A6812G", "C6854G", "A6855G", "A6868T", "T6888C", "G6948A", "-6955C", "-6956A", "-6958T", "-6959A", "-6960A", "C7006-", "A7007-", "C7008-", "T7009-", "A7044G", "C7045A", "T7090G", "A7151T", "A7155G", "A7160G", "G7212A", "A7256G", "A7275G", "G7289C", "T7618C", "T7624A", "A7626T", "T7656C", "A7701C", "G7702A", "A7734G", "T7747G", "A7753G", "A7885G", "C7932T", "T7936C", "A7943G", "C8038G", "G8070T", "T8091G", "A8093G", "T8094C", "T8097G", "G8130A", "G8180A", "G8181T", "T8196C", "T8321C", "A8407G", "A8409G", "C8412G", "A8435G", "G8469A", "A8549C", "A8643G", "A8693C", "G8794A", "G8807A", "G8861A", "G8864T", "A8874G", "T8903C", "G8904T", "C8928A", "T8939C", "C9023A", "A9060T", "T9074C"], "RT-p51": ["K11S", "E177D", "I202V", "K357R", "K395R"], "RT-p66": ["K11S", "E177D", "I202V", "K357R", "K395R"], "gp120": ["R18K", "D21E", "L58M", "V73A", "-112V", "-113T", "-114K", "S130T", "L137I", "K143Q", "D157G", "N159S", "E240G", "I305V", "K315E", "K320E", "Q334G", "M345T", "S365N", "N397R", "S412R", "N414I", "S453N", "I468V", "K474R", "E479Q"], "gp41": ["Y108F", "I118T", "E133T", "D148E", "S210I", "G225E", "S256L", "F263C", "I264A", "L265W", "G293I", "I298T", "L304F"], "nef": ["V33A", "V43I", "R151K", "M173I", "R178G", "A188S", "L198M"], "p1": ["K4R", "I5L", "N9H"], "p17": ["M31L", "Q58R", "E62Q", "S66P", "T67S", "K69Q", "W86Y", "Q90S", "V107E", "Q112K", "Q113K", "T115A", "A118K", "S124N", "K127Q"], "p2": ["Q6N", "N9Q", "-10A", "-11N", "-12I", "I13M"], "p24": ["L15I"], "p6": ["N14S", "W15-", "G16-", "M17-", "G18-", "E19-", "E20-", "I21-", "T22-", "S23-", "S24-", "P25-", "E34D", "H35L", "P36Y", "P38L"], "pro": ["I15V", "V82I"], "rev": ["S30P", "L64V", "Q74P", "G111D"], "tat": ["Q17K", "P75S", "I76T"], "vif": ["K77R", "N93T", "S95N", "Q105R", "K122R", "R131S", "K141Q"], "vpr": ["Y15H", "I63T"], "vpu": ["V21I", "V43I", "R47T"]}, "labels": {"aa": "RT-p51: K11S, E177D, I202V, K357R, K395R; RT-p66: K11S, E177D, I202V, K357R, K395R; gp120: R18K, D21E, L58M, V73A, -112V, -113T, -114K, S130T, L137I, K143Q, D157G, N159S, E240G, I305V, K315E, K320E, Q334G, M345T, S365N, N397R, S412R, N414I, S453N, I468V, K474R, E479Q; gp41: Y108F, I118T, E133T, D148E, S210I, G225E, S256L, F263C, I264A, L265W, G293I, I298T, L304F; nef: V33A, V43I, R151K, M173I, R178G, A188S, L198M; p1: K4R, I5L, N9H; p17: M31L, Q58R, E62Q, S66P, T67S, K69Q, W86Y, Q90S, V107E, Q112K, Q113K, T115A, A118K, S124N, K127Q; p2: Q6N, N9Q, -10A, -11N, -12I, I13M; p24: L15I; p6: N14S, W15-, G16-, M17-, G18-, E19-, E20-, I21-, T22-, S23-, S24-, P25-, E34D, H35L, P36Y, P38L; pro: I15V, V82I; rev: S30P, L64V, Q74P, G111D; tat: Q17K, P75S, I76T; vif: K77R, N93T, S95N, Q105R, K122R, R131S, K141Q; vpr: Y15H, I63T; vpu: V21I, V43I, R47T", "clade": "CRF101_01B"}}, "children": [{"name": "MK158945", "node_attrs": {"div": 0.17226999999999998, "accession": "MK158945", "clade_membership": {"value": "CRF101_01B"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "YNZT036"}, "LANL_subtype": {"value": "CRF101_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C193T", "G425A", "A470T", "C476T", "A562G", "A603G", "T641G", "A643T", "C662A", "A663C", "C688A", "A708G", "A725C", "A730T", "C917T", "T979C", "C983T", "G987C", "T988C", "A989C", "T992G", "A1002T", "G1016A", "G1019A", "G1022A", "C1060A", "G1078C", "A1089C", 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"A5045G", "G5059A", "C5132T", "A5142C", "A5185G", "C5221T", "C5250A", "T5251G", "G5285A", "G5382T", "T5412A", "T5415C", "G5418A", "G5444A", "T5466C", "C5478T", "G5556C", "A5581C", "A5599C", "A5611T", "A5622G", "A5623C", "A5649G", "C5658T", "T5659G", "T5660C", "A5702G", "T5708A", "G5712A", "G5733A", "C5756A", "T5827C", "T5861G", "T5878C", "G5893A", "G5907A", "C5974A", "C6023T", "G6029A", "A6094G", "C6110G", "C6148T", "T6155C", "T6160G", "T6171A", "-6172G", "-6175G", "A6185T", "C6196-", "A6197-", "T6199-", "-6207G", "-6211T", "-6216C", "-6217A", "-6220G", "-6222A", "-6230A", "A6232G", "G6274A", "C6278A", "T6310C", "T6325A", "A6330G", "G6336A", "T6337C", "G6338A", "A6339G", "G6340T", "C6352T", "C6397T", "G6442A", "T6446C", "A6462T", "G6463A", "C6469T", "G6481A", "C6499T", "A6514G", "G6575A", "A6686G", "T6690C", "A6691G", "-6697C", "A6703-", "A6715G", "A6744G", "T6760C", "G6773A", "C6807A", "T6808G", "G6809A", "G6889A", "G6910A", "A6935G", "T6953A", "C6955T", "-6957A", "-6961T", "-6962A", "-6963C", "-6964T", "-6965A", "-6981G", "-6982C", "-6983C", "-6984C", "-6985T", "-6989A", "-6990G", "-6994T", "A7045G", "A7138G", "T7144G", "T7147G", "A7158C", "C7165T", "G7168A", "G7291A", "G7441A", "G7456A", "C7463A", "A7533G", "G7534T", "T7575C", "C7579T", "G7589A", "C7590A", "C7597T", "G7633A", "A7641G", "A7688G", "G7700A", "A7702C", "T7751C", "G7773A", "A7782G", "G7790T", "A7791C", "A7903C", "T7918G", "G7943A", "T7968C", "G7977A", "G8019A", "C8092T", "A8173G", "C8213T", "C8238G", "G8254A", "T8256G", "A8269G", "A8271T", "C8287T", "C8320A", "A8329G", "A8341G", "C8413G", "T8414G", "C8415G", "T8440C", "C8445A", "G8486A", "T8505A", "A8525T", "T8567C", "G8643A", "C8688A", "C8715G", "A8716G", "A8739G", "C8747T", "A8750T", "C8768T", "C8775T", "A8792T", "A8809C", "C8813T", "G8852A", "A8859G", "T8860C", "A8873C", "C8906T", "A8917G", "T8935G", "G8945T", "G8962T", "A8965T", "A8966G", "A8967T", "T8972C", "T8974G", "A8978C", "C8979A", "T8980A", "-8988T", "G9132A", "A9134T"], "INT": ["V31I", "S39N", "V126L"], "RT-p51": ["V8I", "K65R", "S68G", "Y115F", "S123N", "I135L", "M184V", "A286T", "D291E", "V326I", "N348I", "S379G"], "RT-p66": ["V8I", "K65R", "S68G", "Y115F", "S123N", "I135L", "M184V", "A286T", "D291E", "V326I", "N348I", "S379G", "H483Q", "E529D"], "gp120": ["S3A", "H57Y", "E59K", "Q86E", "N102K", "-107K", "N108I", "-109E", "T110I", "-111K", "-119N", "-120I", "-121T", "-122E", "V126M", "Q142K", "N160S", "S161D", "R164M", "V180I", "K203I", "K212T", "E241K", "S278G", "I279T", "H280T", "D297G", "Y302F", "G307R", "A318K", "N327-", "K361E", "-377S", "-379N", "-380T", "-381S", "-382P", "-383N", "-384S", "I414K", "N433Y", "N434S", "N435T", "T436D"], "gp41": ["K77S", "I91T", "A96N", "D113G", "N129D", "K144R", "S157N", "N160S", "D163S", "I222T", "S239N", "A245V", "R277Q", "A312G", "V318G", "Q323L"], "nef": ["T23A", "A27T", "G29R", "Q35K", "M48I", "C55S", "Q61H", "H116N", "Q125G", "I133V", "D156A", "I173A", "E174D", "E177D", "K192R", "M198R", "E201D", "*207L"], "p17": ["I61L", "K76R", "T81A", "S90G", "L101I", "D102E", "K103I", "N109K", "K110Q", "N125D", "Q130H", "Y132F"], "p2": ["S5N"], "p24": ["E79D", "V83A", "V86P", "H87Q", "I91F", "M96I", "T110N", "G116A", "S120H", "T216P"], "p6": ["-15A", "-26Q"], "p7": ["R26K"], "pro": ["K14R", "G16E", "K20I", "D35N"], "rev": ["R14T", "H82C", "V108A", "I109V"], "tat": ["E2D", "N12K", "S23N", "Q60H", "I69L", "S87P"], "vif": ["M29I", "Y30H", "H48N", "L109Q", "D113E", "E134N", "K151R", "R158K", "N186H"], "vpr": ["P10S", "E13A", "T49Q", "A93S"], "vpu": ["T2S", "I6L", "L18A", "K32R", "L34Q", "A50E", "F74L"]}, "labels": {"aa": "INT: V31I, S39N, V126L; RT-p51: V8I, K65R, S68G, Y115F, S123N, I135L, M184V, A286T, D291E, V326I, N348I, S379G; RT-p66: V8I, K65R, S68G, Y115F, S123N, I135L, M184V, A286T, D291E, V326I, N348I, S379G, H483Q, E529D; gp120: S3A, H57Y, E59K, Q86E, N102K, -107K, N108I, -109E, T110I, -111K, -119N, -120I, -121T, -122E, V126M, Q142K, N160S, S161D, R164M, V180I, K203I, K212T, E241K, S278G, I279T, H280T, D297G, Y302F, G307R, A318K, N327-, K361E, -377S, -379N, -380T, -381S, -382P, -383N, -384S, I414K, N433Y, N434S, N435T, T436D; gp41: K77S, I91T, A96N, D113G, N129D, K144R, S157N, N160S, D163S, I222T, S239N, A245V, R277Q, A312G, V318G, Q323L; nef: T23A, A27T, G29R, Q35K, M48I, C55S, Q61H, H116N, Q125G, I133V, D156A, I173A, E174D, E177D, K192R, M198R, E201D, *207L; p17: I61L, K76R, T81A, S90G, L101I, D102E, K103I, N109K, K110Q, N125D, Q130H, Y132F; p2: S5N; p24: E79D, V83A, V86P, H87Q, I91F, M96I, T110N, G116A, S120H, T216P; p6: -15A, -26Q; p7: R26K; pro: K14R, G16E, K20I, D35N; rev: R14T, H82C, V108A, I109V; tat: E2D, N12K, S23N, Q60H, I69L, S87P; vif: M29I, Y30H, H48N, L109Q, D113E, E134N, K151R, R158K, N186H; vpr: P10S, E13A, T49Q, A93S; vpu: T2S, I6L, L18A, K32R, L34Q, A50E, F74L"}}}, {"name": "CRF101_01B_NODE_0000001", "node_attrs": {"div": 0.14245, "clade_membership": {"value": "CRF101_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T1784G", "C3908T", "C5047T", "T5695G", "A5867C", "C5869A", "C6317G", "G6346A", "A6443C", "A6692C", "A6848T", "A7095T", "A7164C", "G7717A", "A8455C", "T8477C", "C8934A", "C9075T"], "RT-p51": ["R358G"], "RT-p66": ["R358G"], "gp120": ["N5Q", "I197L"], "gp41": ["R214G"], "nef": ["D38A", "I101V"], "rev": ["E32G"], "vpr": ["I61V"]}, "labels": {"aa": "RT-p51: R358G; RT-p66: R358G; gp120: N5Q, I197L; gp41: R214G; nef: D38A, I101V; rev: E32G; vpr: I61V"}}, "children": [{"name": "KF835546", "node_attrs": {"div": 0.17226999999999998, "accession": "KF835546", "clade_membership": {"value": "CRF101_01B"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN370"}, "LANL_subtype": {"value": "CRF101_01B"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "C201T", "T213C", "T214G", "-215A", "-216A", "-217A", "G386A", "G407A", "G425A", "A461G", "C471A", "C476T", "C482T", "C496T", "C516A", "G518A", "G576A", "A585G", "C586T", "G599A", "G615A", "A636G", "A644G", "C679T", "C714A", "C722T", "G747C", "T773A", "A776G", "C872A", "T890C", "A899G", "C968A", "G1019A", "G1090A", "C1137T", "G1168A", "C1322T", "T1422C", "T1457C", "C1490T", "A1643G", "G1697A", "A1709G", "A1719G", "C1743-", "C1744-", "T1745-", "T1746C", "C1750T", "-1753T", "C1782A", "T1783A", "G1852A", "C2113A", "C2127T", "A2203C", "A2592G", "A2629T", "G2630A", "G2710A", "A2808G", "C2848T", "G2929A", "G2951A", "A2959G", "G3010A", "C3023T", "A3043G", "T3045C", "T3068C", "A3076G", "G3208A", "G3283A", "G3344A", "C3356T", "C3357A", "T3496G", "A3619C", "G3644A", "C3712T", "C3751T", "T3799C", "A3808C", "G3816A", "G3859A", "G3866A", "A3982G", "A4021G", "G4109A", "C4138T", "C4181A", "T4240C", "C4288T", "A4333G", "G4673A", "G4677A", "A4696G", "T4715C", "G4749A", "A4766G", "G4786A", "C4826A", "A4874T", "C4910T", "C4925T", "C4937A", "A4977G", "G4978A", "C4988A", "A4994G", "A5056G", "G5066A", "T5091C", "C5162A", "T5203C", "A5233G", "C5248A", "C5249A", "T5314C", "C5406T", "A5462T", "A5494C", "A5496T", "A5548C", "A5599G", "A5602T", "G5620C", "T5696C", "G5699A", "G5781A", "C5866A", "G5907A", "A5926C", "A5938G", "A5955T", "G6085A", "A6157G", "A6158G", "T6163C", "C6166T", "C6169T", "A6170G", "-6172C", "-6175T", "T6178A", "G6179T", "T6180C", "A6182G", "A6185C", "A6188G", "C6189G", "A6194G", "G6195A", "A6197T", "-6198C", "-6200C", "-6201A", "-6202C", "-6203A", "-6204T", "-6205A", "-6206G", "-6207G", "-6211T", "A6212C", "-6216C", "-6217A", "-6220G", "-6222A", "-6224G", "G6234A", "A6275C", "C6278A", "G6284T", "A6319C", "A6322G", "T6325A", "T6328C", "G6333A", "T6334G", "G6335A", "T6345G", "G6481A", "G6547A", "A6638G", "C6652T", "A6654G", "C6660T", "A6725C", "G6726A", "A6734G", "T6735A", "C6752A", "T6759A", "G6775A", "C6777A", "A6781G", "G6797A", "A6798G", "G6812A", "-6833A", "-6834T", "-6835T", "T6849C", "G6855A", "T6868A", "T6904C", "G6910A", "A6932T", "A6936G", "G6940A", "A6950G", "-6957T", "T6958A", "-6985A", "-6989A", "-6990A", "-6994G", "-6995G", "-6996G", "-6997G", "-6998T", "-6999G", "-7000T", "-7001G", "-7002A", "-7003G", "-7004A", "-7005A", "-7006C", "-7007A", "-7008A", "-7009T", "C7012T", "T7014C", "G7026A", "T7081C", "G7090A", "T7102G", "T7147A", "A7152C", "T7153A", "G7160A", "A7161G", "C7165T", "G7195A", "T7220C", "A7265T", "A7269G", "A7447T", "C7463A", "T7625C", "T7626A", "A7630C", "G7640A", "G7700A", "C7732T", "A7742C", "A7818G", "T7843C", "A7862G", "T7919C", "C7921T", "A8011C", "G8017C", "A8029G", "G8030A", "C8033A", "G8038T", "G8055A", "G8093A", "G8105A", "C8171T", "A8180C", "T8182C", "C8213T", "C8223T", "A8228G", "A8273G", "C8406G", "G8407C", "T8411A", "T8495C", "T8498C", "T8505A", "A8617G", "A8701T", "A8717C", "A8780G", "T8786G", "A8812C", "A8827G", "C8843T", "G8846A", "A8859C", "T8864G", "G8888A", "C8903T", "T8904G", "C8913A", "A8917C", "T8923G", "A8933G", "C8939T", "A8942G", "A8969G", "A8970G", "C8975T", "T8976A", "G8981A", "C9018T", "T9060A", "C9108-", "-9109T"], "INT": ["E11D", "R14K", "V31I", "V112I"], "RT-p51": ["D6E", "S11L", "E36D", "K166R", "V179I", "K238R", "A286T", "V317A", "V417I", "P421Y"], "RT-p66": ["D6E", "S11L", "E36D", "K166R", "V179I", "K238R", "A286T", "V317A", "V417I", "P421Y", "V517I"], "gp120": ["D4E", "E34V", "N102D", "T104S", "D105H", "-106Q", "-107V", "-109I", "-111D", "-115S", "-116A", "-117H", "-118G", "-119N", "-120D", "-121S", "-122H", "-123I", "-124G", "R127K", "K141Q", "Q142K", "V144F", "Q155D", "I156M", "S159N", "N160K", "S162E", "V180I", "K212T", "K262E", "N267S", "T269I", "H280P", "R291Q", "D294E", "Q300K", "T308K", "E315R", "A318T", "K319E", "E320K", "-326I", "N328-", "I332S", "G334E", "T360S", "K361R", "T366A", "-367C", "-368I", "-369K", "-379N", "-380T", "-381G", "-382C", "-383E", "-384N", "T385N", "I387T", "R391K", "N416K", "N433S", "N434S", "T436S", "N437T", "M447I", "Y456H", "T471S", "K472R"], "gp41": ["F108H", "E109D", "D113N", "K144R", "K147Q", "K172R", "I187V", "F206L", "E225G", "A243T", "L244I", "A245V", "S251N", "A264T", "A268T", "R277L", "I293L", "T307I", "I309V", "R324G"], "nef": ["R22K", "P24R", "C55S", "K92R", "Y120F", "Q125H", "N157T", "N162S", "M168I", "I173L", "M182I", "S188A", "K192T", "I194R"], "p17": ["L46I", "A54V", "T84V", "V94I", "L101V", "A115V", "K118T", "Q127K"], "p24": ["A6P", "I15M", "M96I", "S120N", "S146N"], "p6": ["S14-", "L35K", "Y36Q"], "rev": ["E11D", "I55L", "E57Q", "S61D", "T62N", "V64L", "S86N", "D111A", "S112P"], "tat": ["K29I", "K40H", "T58P"], "vif": ["M29I", "K37R", "V55I", "R67K", "H80Q", "N95S", "D117E", "S131D", "T154I", "K157R", "H192Q"], "vpr": ["L20I", "D48E"], "vpu": ["E5Q", "F30A", "R31K"]}, "labels": {"aa": "INT: E11D, R14K, V31I, V112I; RT-p51: D6E, S11L, E36D, K166R, V179I, K238R, A286T, V317A, V417I, P421Y; RT-p66: D6E, S11L, E36D, K166R, V179I, K238R, A286T, V317A, V417I, P421Y, V517I; gp120: D4E, E34V, N102D, T104S, D105H, -106Q, -107V, -109I, -111D, -115S, -116A, -117H, -118G, -119N, -120D, -121S, -122H, -123I, -124G, R127K, K141Q, Q142K, V144F, Q155D, I156M, S159N, N160K, S162E, V180I, K212T, K262E, N267S, T269I, H280P, R291Q, D294E, Q300K, T308K, E315R, A318T, K319E, E320K, -326I, N328-, I332S, G334E, T360S, K361R, T366A, -367C, -368I, -369K, -379N, -380T, -381G, -382C, -383E, -384N, T385N, I387T, R391K, N416K, N433S, N434S, T436S, N437T, M447I, Y456H, T471S, K472R; gp41: F108H, E109D, D113N, K144R, K147Q, K172R, I187V, F206L, E225G, A243T, L244I, A245V, S251N, A264T, A268T, R277L, I293L, T307I, I309V, R324G; nef: R22K, P24R, C55S, K92R, Y120F, Q125H, N157T, N162S, M168I, I173L, M182I, S188A, K192T, I194R; p17: L46I, A54V, T84V, V94I, L101V, A115V, K118T, Q127K; p24: A6P, I15M, M96I, S120N, S146N; p6: S14-, L35K, Y36Q; rev: E11D, I55L, E57Q, S61D, T62N, V64L, S86N, D111A, S112P; tat: K29I, K40H, T58P; vif: M29I, K37R, V55I, R67K, H80Q, N95S, D117E, S131D, T154I, K157R, H192Q; vpr: L20I, D48E; vpu: E5Q, F30A, R31K"}}}, {"name": "MK158946", "node_attrs": {"div": 0.17164, "accession": "MK158946", "clade_membership": {"value": "CRF101_01B"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "YNKM250"}, "LANL_subtype": {"value": "CRF101_01B"}}, "branch_attrs": {"mutations": {"nuc": ["C193T", "A356G", "G424A", "C426T", "A470G", "A563G", "G604A", "A636C", "T641G", "A675C", "C688A", "A774G", "G821A", "A839G", "C872T", "G978T", "T1334C", "A1404G", "A1495G", "A1499C", "A1567G", "G1586A", "T1646C", "C1656A", "A1657G", "A1659-", "A1660-", "G1661-", "A1701T", "A1709T", "G1726A", "G1732A", "G1742A", "T1748C", "C1751A", "T1752C", "-1753A", "A1754G", "T1756A", "G1760A", "C1785T", "T2080C", "A2149C", "G2164A", "A2202C", "A2210G", "A2212G", "G2215A", "A2254G", "T2440C", "C2521T", "C2540T", "G2542A", "T2613G", "A2713G", "T2737C", "G2828A", "C2909G", "A2937G", "T3002C", "A3120T", "A3142G", "T3175C", "A3200G", "G3264A", "T3303C", "A3334C", "C3376T", "G3435A", "G3569A", "C3649T", "G3664A", "A3683C", "A3733G", "C4072T", "C4076A", "G4078A", "C4126T", "C4204T", "G4737A", "C4826T", "G4870A", "T5006A", "C5019T", "A5046G", "A5112G", "C5116A", "G5131A", "G5179C", "C5215T", "C5224T", "C5250A", "G5276C", "C5292T", "T5293G", "G5312A", "G5448T", "T5482A", "T5582C", "T5625C", "T5636C", "A5656G", "A5704G", "T5736C", "A5746G", "C5789-", "A5790-", "G5791-", "A5792C", "T5793A", "A5796T", "T5797G", "T5798A", "G5799C", "G5800T", "C5801T", "C5802G", "A5803G", "A5804C", "A5805T", "C5806A", "T5807A", "G5808A", "-5809C", "-5810T", "-5811T", "T5844G", "G5856A", "G5893A", "T5964C", "G5965A", "C5974A", "T6046G", "A6065G", "A6066G", "G6071A", "A6075T", "T6081C", "T6101G", "A6111C", "G6121T", "C6122A", "G6133T", "A6136T", "C6140A", "C6141A", "C6143A", "T6146A", "T6151C", "A6152G", "T6154C", "A6157C", "T6161A", "C6165G", "G6167A", "T6171C", "-6172T", "A6173G", "C6174T", "-6175C", "G6179A", "T6180A", "G6181C", "C6184T", "C6189A", "A6191T", "-6198G", "T6199A", "A6208-", "A6209-", "A6210-", "A6212-", "T6213-", "A6214-", "A6215-", "G6218-", "A6219-", "G6221-", "A6223-", "-6226G", "-6227G", "-6228A", "-6229A", "-6230C", "A6237C", "T6250C", "T6252C", "A6254G", "C6255A", "A6265T", "A6268G", "G6277A", "A6292T", "T6297G", "T6299C", "A6311G", "A6327G", "G6336C", "A6350G", "T6358C", "A6392G", "C6397T", "G6442A", "G6451A", "T6460G", "C6483A", "C6489A", "C6511T", "G6573A", "A6574C", "G6575A", "G6588A", "G6611A", "A6648T", "A6683G", "C6684A", "A6689G", "C6693A", "A6742G", "G6767A", "A6779G", "A6780T", "G6788A", "A6790C", "A6806G", "A6810G", "-6833A", "-6834A", "-6835T", "C6843G", "A6844T", "T6849A", "C6861A", "A6886G", "G6889A", "C6951A", "T6953G", "-6957C", "-6961T", "-6962G", "-6963G", "-6964G", "-6965A", "-6966C", "-6967T", "A6986-", "A6987-", "T6988-", "C6991-", "A6992-", "C6993-", "G7040A", "A7085G", "G7089A", "G7106A", "T7151A", "A7152G", "T7153G", "G7155C", "T7162G", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "G7182A", "C7238G", "G7256A", "G7291A", "G7366A", "T7411C", "A7572G", "C7579T", "T7591C", "C7597T", "A7630G", "T7708C", "A7722G", "G7734A", "T7751A", "A7938T", "C7949G", "G7957A", "A7971C", "G7977A", "A8032G", "T8037C", "A8086G", "C8196T", "G8216A", "T8221C", "G8241A", "T8265C", "A8288T", "C8321T", "A8323G", "C8336A", "A8403C", "C8406A", "A8408G", "G8409A", "C8413G", "T8414G", "A8425C", "G8518A", "A8519G", "C8549T", "G8554C", "G8558A", "A8564G", "T8567G", "G8588A", "A8604G", "T8675C", "C8693T", "G8732A", "G8738A", "T8740C", "C8747T", "A8794C", "A8801G", "C8810A", "T8829A", "C8867T", "G8983A", "C9093T", "T9095G", "G9132A"], "INT": ["L101I"], "RT-p51": ["E36A", "K39E", "I173R", "E245K", "P272A", "K281R", "Y342F", "T369A", "R390K", "M403T", "E413D"], "RT-p66": ["E36A", "K39E", "I173R", "E245K", "P272A", "K281R", "Y342F", "T369A", "R390K", "M403T", "E413D", "S447N", "E492K", "K530Q"], "gp120": ["S1N", "K18R", "V37A", "N64K", "N71G", "A73T", "E74V", "M76T", "L83V", "Q86P", "K89N", "P90T", "K93N", "P96N", "L97I", "C98S", "T100A", "L101F", "N102-", "C103-", "T104-", "D105-", "N108-", "V126L", "N128T", "M133T", "T134D", "F148C", "Y149H", "I153V", "Q155E", "G157K", "N158D", "S161G", "S162N", "R164I", "I166V", "D202E", "P210Q", "G240D", "E241K", "R245K", "A253T", "E265V", "T277E", "I279V", "Y302F", "V305I", "K309V", "E312N", "K319G", "T330S", "I332Y", "P336H", "T366N", "-367G", "-368T", "-369N", "-370G", "-371T", "N378-", "T385-", "V396I", "I411V", "R412K", "V418I", "N432P", "N435R", "G443E", "Q462E", "V468I"], "gp41": ["M54L", "K90R", "T133A", "N140S", "L150M", "H212L", "P216A", "E223A", "T298I", "F304L", "D305N", "G313E", "V321A", "I329F", "L345I"], "nef": ["P24G", "E28A", "A33V", "R59K", "R71T", "S88G", "I133T", "K151T", "D156E", "C163S", "E174D"], "p1": ["H9S", "K10-"], "p17": ["R30K", "I61L", "T81A", "S90N", "D102E", "K114Q"], "p24": ["I15V", "E79D", "V83L", "S225G"], "p6": ["T8S", "A12E", "S14I", "-15P", "-16S", "-17S", "-18Q", "-19K", "-20Q", "-21E", "-26Q"], "p7": ["K10R", "R11S", "K34R"], "rev": ["Y23H", "T34S", "A37T", "T62A", "R80G", "H82R", "V108A"], "tat": ["K24N", "L36I", "I69T", "T77S", "N80K", "G83D"], "vif": ["I31V", "V51I", "E134D", "N140K", "T154V", "K176E", "P177H", "G182D"], "vpr": ["Q3R", "E25D", "T49H", "E58Q", "T63M", "V70I"], "vpu": ["V10A", "I17V", "F30V", "I33V", "T47A", "E63D"]}, "labels": {"aa": "INT: L101I; RT-p51: E36A, K39E, I173R, E245K, P272A, K281R, Y342F, T369A, R390K, M403T, E413D; RT-p66: E36A, K39E, I173R, E245K, P272A, K281R, Y342F, T369A, R390K, M403T, E413D, S447N, E492K, K530Q; gp120: S1N, K18R, V37A, N64K, N71G, A73T, E74V, M76T, L83V, Q86P, K89N, P90T, K93N, P96N, L97I, C98S, T100A, L101F, N102-, C103-, T104-, D105-, N108-, V126L, N128T, M133T, T134D, F148C, Y149H, I153V, Q155E, G157K, N158D, S161G, S162N, R164I, I166V, D202E, P210Q, G240D, E241K, R245K, A253T, E265V, T277E, I279V, Y302F, V305I, K309V, E312N, K319G, T330S, I332Y, P336H, T366N, -367G, -368T, -369N, -370G, -371T, N378-, T385-, V396I, I411V, R412K, V418I, N432P, N435R, G443E, Q462E, V468I; gp41: M54L, K90R, T133A, N140S, L150M, H212L, P216A, E223A, T298I, F304L, D305N, G313E, V321A, I329F, L345I; nef: P24G, E28A, A33V, R59K, R71T, S88G, I133T, K151T, D156E, C163S, E174D; p1: H9S, K10-; p17: R30K, I61L, T81A, S90N, D102E, K114Q; p24: I15V, E79D, V83L, S225G; p6: T8S, A12E, S14I, -15P, -16S, -17S, -18Q, -19K, -20Q, -21E, -26Q; p7: K10R, R11S, K34R; rev: Y23H, T34S, A37T, T62A, R80G, H82R, V108A; tat: K24N, L36I, I69T, T77S, N80K, G83D; vif: I31V, V51I, E134D, N140K, T154V, K176E, P177H, G182D; vpr: Q3R, E25D, T49H, E58Q, T63M, V70I; vpu: V10A, I17V, F30V, I33V, T47A, E63D"}}}]}]}, {"name": "NODE_0000723", "node_attrs": {"div": 0.11331999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C426A", "T662G", "G1673A", "G2273A", "G2380A", "G2755A", "C2776T", "A2788G", "C2818A", "G2828C", "A2830G", "C2845T", "A2872G", "C2885T", "T2890C", "A2902G", "G2914A", "G2920A", "G3001A", "A3937G", "G4736A", "T4754C", "C4800T", "-6198C", "-6201A", "-6204A", "-6211A", "A6212G", "-6216A", "A6219T", "-6220A", "-6222C", "-6225A", "-6226T", "C6287T", "G6774A", "G6809A", "G7992A", "C8775T", "A8978-", "G9033-"], "RT-p51": ["V60I", "E245Q"], "RT-p66": ["V60I", "E245Q"], "gp120": ["H145Y", "G307E"], "gp41": ["G230D"], "p17": ["N109K"], "p6": ["I21M"], "tat": ["K24N"]}, "labels": {"aa": "RT-p51: V60I, E245Q; RT-p66: V60I, E245Q; gp120: H145Y, G307E; gp41: G230D; p17: N109K; p6: I21M; tat: K24N"}}, "children": [{"name": "results/subtype_trees/CRF100_01C.nwk", "node_attrs": {"div": 0.13998, "clade_membership": {"value": "CRF100_01C"}}, "branch_attrs": {"mutations": {"nuc": ["T227C", "C229T", "T230G", "A303T", "G317A", "C393A", "A398G", "C471G", "A518G", "A548G", "G615A", "G654A", "T827C", "G920A", "A1142G", "C1178T", "A1193G", "A1340G", "A1415G", "A1442C", "C1444T", "G1487A", "A1562G", "G1586A", "A1670G", "A1701T", "A1736G", "T1752C", "C1775A", "A1776C", "G1778T", "G1779-", "A1780-", "-1783C", "G1794A", "G1845A", "C1853T", "T2453C", "T2499C", "A2612G", "C2626A", "G2630A", "T2631C", "C2671T", "G2683A", "G2704A", "C2708T", "G2725A", "G2764A", "A2881T", "T2908C", "G2932T", "C2944T", "A2950G", "T2953C", "A2956G", "A2985C", "A2998T", "A3079G", "A3088G", "G3097A", "T3112C", "A3200G", "A3238G", "A3279G", "T3303C", "T3346C", "G3409A", "G3442A", "T3544G", "A3547G", "G3664A", "C3691T", "C3751T", "A3805G", "C3843T", "T3928C", "G3952A", "A3955C", "A3985G", "G4267A", "T4656A", "A4766G", "A4774T", "C4841T", "A4865C", "T4991C", "A5046G", "A5090G", "G5128A", "T5147A", "A5148G", "A5154C", "T5228C", "A5355T", "T5412G", "A5447C", "C5482A", "A5574G", "A5587G", "G5643A", "A5694G", "T5696G", "A5704T", "A5706C", "T5731C", "A5792C", "A5795C", "T5797C", "G5799T", "C5801T", "C5802G", "A5803G", "C5806A", "T5808G", "-5809G", "-5810G", "-5811G", "T5813-", "G5814-", "G5815-", "A5816-", "A5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "G5824-", "T5964C", "A6024C", "C6067A", "A6164T", "C6166T", "T6171-", "A6173-", "T6187A", "-6205G", "-6207A", "T6213G", "-6217T", "G6218A", "A6235G", "C6238T", "T6242A", "G6283T", "A6327G", "-6340G", "T6373C", "T6445G", "G6550A", "G6605A", "A6638G", "A6649G", "C6667A", "T6668G", "C6669G", "A6751G", "A6753G", "T6760C", "A6806G", "A6810G", "A6811C", "-6955G", "-6979A", "-6980G", "-6981G", "-6982A", "-6983A", "-6984A", "-6989A", "-6990A", "C6993A", "A7096C", "A7123G", "T7144G", "A7148G", "A7158C", "G7195A", "C7238G", "G7441A", "T7544C", "T7609C", "A7626T", "A7630T", "G7633A", "A7701G", "G7744A", "C7939A", "A7964G", "C8038G", "C8069A", "C8092A", "A8093C", "C8171A", "T8182C", "G8254A", "C8287A", "A8288T", "C8291A", "T8321C", "A8407G", "G8436A", "C8437A", "T8509C", "A8517G", "G8518A", "A8584T", "A8660G", "A8678G", "T8690C", "G8732A", "T8740C", "A8746T", "A8762G", "G8804A", "C8831T", "G8904T", "A8917C", "T8923G", "A8924G", "A8930C", "A8933G", "G8936A", "A8942G", "T8951C", "A8966C", "G8971C", "A8977G", "C8979A", "T8980A", "-8988T", "G8991A", "G8997-", "A8998-", "T9000G", "A9009-", "C9017T", "G9019T", "A9026G", "G9027A", "T9028C", "T9029A", "A9134T", "G9147A"], "INT": ["A23V"], "RT-p51": ["I135T", "V179T", "E297T", "L301F", "T369A", "K395R", "M403T"], "RT-p66": ["I135T", "V179T", "E297T", "L301F", "T369A", "K395R", "M403T", "H483Q"], "gp120": ["V37A", "H57P", "N71K", "S130T", "K143N", "S162K", "D251N", "K262E", "S272G", "Q300R", "K319S", "-367W", "-379N", "N432V", "T436N", "M447I", "Q462E"], "gp41": ["E109D", "D113N", "E133G", "S210N", "H212Q", "R221G", "F263L", "I264L", "L290I", "I329F", "L330I"], "nef": ["A32K", "V56T", "R59E", "Y81F", "Y135F", "R151K", "A188S", "K192T", "I194R"], "p17": ["L46V", "I61M", "V94I", "V107I"], "p2": ["A7V", "Q8T"], "p24": ["D128E"], "p6": ["T8S", "P25L", "Q30P", "D32-", "K33-", "E34-", "H35-", "P36-", "V39I"], "pro": ["G16E"], "rev": ["P31T", "L64V", "H82T", "V108D", "S112P"], "tat": ["N12K", "N24T", "L36I", "K71E", "P75T", "T77N"], "vif": ["L24I", "I31V", "K63I", "S95N", "T154A", "R181K", "T188A"], "vpr": ["Y15S", "E17A"], "vpu": ["F30C", "R31K", "I33F", "R35K", "D60E", "T61L", "D62A", "E63A", "A65V", "K66E", "L67M", "-68G", "V69D", "E70F", "M71D", "G72-", "D73-", "F74-", "D75-"]}, "labels": {"aa": "INT: A23V; RT-p51: I135T, V179T, E297T, L301F, T369A, K395R, M403T; RT-p66: I135T, V179T, E297T, L301F, T369A, K395R, M403T, H483Q; gp120: V37A, H57P, N71K, S130T, K143N, S162K, D251N, K262E, S272G, Q300R, K319S, -367W, -379N, N432V, T436N, M447I, Q462E; gp41: E109D, D113N, E133G, S210N, H212Q, R221G, F263L, I264L, L290I, I329F, L330I; nef: A32K, V56T, R59E, Y81F, Y135F, R151K, A188S, K192T, I194R; p17: L46V, I61M, V94I, V107I; p2: A7V, Q8T; p24: D128E; p6: T8S, P25L, Q30P, D32-, K33-, E34-, H35-, P36-, V39I; pro: G16E; rev: P31T, L64V, H82T, V108D, S112P; tat: N12K, N24T, L36I, K71E, P75T, T77N; vif: L24I, I31V, K63I, S95N, T154A, R181K, T188A; vpr: Y15S, E17A; vpu: F30C, R31K, I33F, R35K, D60E, T61L, D62A, E63A, A65V, K66E, L67M, -68G, V69D, E70F, M71D, G72-, D73-, F74-, D75-", "clade": "CRF100_01C"}}, "children": [{"name": "MH909569", "node_attrs": {"div": 0.16636, "accession": "MH909569", "clade_membership": {"value": "CRF100_01C"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "YNLC28"}, "LANL_subtype": {"value": "CRF100_01C"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A388G", "A412G", "T456C", "G518A", "T531C", "A534G", "A576C", "C577T", "G607A", "A704C", "G706A", "C707A", "A708-", "A709-", "C710-", "A711-", "G712-", "C713-", "A714-", "A715-", "A716-", "T774A", "A944C", "A968C", "G1016A", "C1098G", "C1115A", "C1247T", "G1298A", "G1341T", "A1359T", "G1388A", "A1412G", "C1449G", "A1450G", "A1455G", "A1456G", "T1502C", "C1514T", "C1517T", "G1562A", "G1732A", "A1742G", "A1754G", "T1791C", "G1852A", "G1855A", "A1867G", "A1932G", "A2007G", "G2117A", "A2182G", "G2215A", "A2226G", "C2263T", "A2431G", "A2524G", "G2602T", "G2612A", "T2620C", "G2682A", "C2714A", "A2715C", "C2749T", "A2923G", "G2984A", "C3030A", "A3043G", "A3097T", "A3145G", "C3160A", "G3192A", "G3250A", "A3302G", "G3307A", "T3328C", "T3331C", "A3388G", "C3500A", "A3532C", "T3535G", "G3538A", "T3566C", "A3637C", "A3642C", "G3787A", "C3928T", "A3949G", "C3977T", "G3985A", "C3995A", "G3997A", "T4085C", "C4144T", "C4210T", "G4268A", "A4279G", "A4411G", "A4417G", "A4420C", "A4611G", "G4622A", "G4677A", "C4702T", "G4708A", "A4778G", "G4786A", "C4826A", "T4868C", "C4937A", "T4995G", "T5072G", "A5086G", "G5114A", "A5186G", "A5187C", "C5239T", "A5277T", "A5299G", "G5412A", "G5437C", "C5491T", "C5551T", "A5560T", "A5611T", "G5619A", "G5668A", "G5699A", "G5717A", "A5720G", "G5730A", "G5734A", "A5746G", "G5747A", "G5812-", "-5824A", "T5953G", "G5956C", "A5957C", "C6024T", "C6026A", "A6050G", "A6158G", "A6168C", "C6184T", "A6185T", "A6186T", "A6200T", "-6202C", "-6203G", "T6226G", "A6273G", "A6275G", "C6278A", "C6317G", "T6325A", "A6326G", "T6328A", "A6375G", "A6394G", "T6467G", "G6547A", "C6601T", "G6638A", "A6639G", "A6640C", "A6650G", "A6689G", "C6792A", "T6793G", "G6823A", "C6824A", "C6826A", "-6833A", "-6834A", "-6835T", "T6849A", "C6850G", "A6891T", "A6913G", "-6977C", "-6978C", "-6985T", "A6986G", "T6988A", "A6993T", "-6994A", "-6995A", "-6996C", "-6997G", "-6998G", "-6999G", "-7000T", "-7001A", "-7002G", "-7003T", "-7004G", "-7005G", "C7024T", "G7033A", "G7040A", "G7056A", "G7058A", "T7059C", "A7094C", "T7107C", "T7117C", "C7127T", "G7148A", "A7155C", "T7156G", "C7158A", "A7164C", "G7366A", "G7456A", "G7508A", "A7533G", "T7575C", "C7597T", "C7642A", "G7658C", "A7722T", "T7747G", "T7757C", "G7769A", "G7790A", "A7796T", "T7801A", "A7822C", "T7866C", "T7930G", "C7932A", "A7998G", "G8001A", "G8006A", "G8008A", "A8032G", "T8037C", "A8076G", "C8093G", "T8094G", "G8130A", "A8171G", "T8172C", "A8191G", "T8203C", "G8219A", "G8365A", "G8368A", "C8369G", "G8508A", "A8531T", "G8558A", "T8687C", "C8740T", "G8794A", "A8795G", "A8819T", "T8829A", "T8835C", "G8864T", "A8870C", "A8873G", "G8885A", "C8907T", "C8913A", "A8922C", "G8931C", "C8948T", "A9029-", "-9033G", "C9039T"], "INT": ["L74I", "V165I", "K215N", "D279G", "G283S"], "RT-p51": ["V8I", "E44G", "E169D", "G196E", "Q207T", "T312N", "Q334H", "R366K", "T403A"], "RT-p66": ["V8I", "E44G", "E169D", "G196E", "Q207T", "T312N", "Q334H", "R366K", "T403A", "L469I", "L479F", "H480Q", "S491P", "E514D", "E516A"], "gp120": ["H33Q", "E34D", "T35P", "P57L", "L58M", "N66D", "N102D", "T104S", "D105A", "-109V", "-111L", "-112T", "-113N", "-114S", "-115T", "-116Y", "-117P", "-118T", "-119N", "-120A", "-121P", "-122E", "-123K", "-124I", "K140R", "K141E", "Q142K", "Q155E", "D157E", "N158G", "N160S", "K174R", "V180M", "I197M", "F205V", "E262S", "I266V", "I279V", "H280S", "T313K", "H324K", "I332K", "H346L", "-368P", "-376G", "-377N", "N378E", "-380I", "-381T", "-382G", "-383S", "-384G", "V396I", "G401E", "V402T", "N414H", "V418A", "N437T"], "gp41": ["M54L", "V69I", "K77R", "F81L", "I91T", "Y108F", "N113E", "E119Q", "N140I", "D148E", "A156T", "D163N", "T165S", "N166K", "F188S", "D232G", "R233K", "V235I", "H258R", "L264G", "I290A", "A306T"], "nef": ["S8N", "S9K", "E63D", "C163S", "E174D", "E176D", "E197Q"], "p17": ["V7I", "K18R", "K26R", "M61I", "S66P", "T67A", "T81L", "R91K", "S124K", "N125-", "S126-", "K127-"], "p2": ["Q6H", "T8Q", "N9G", "-11A", "-12G"], "p24": ["L15I", "E71D", "E79D", "P123A", "A204S", "T210S"], "p6": ["G18E", "S24P", "K31I", "P37-", "P38-", "I39-"], "pro": ["K45R", "K70R"], "rev": ["K20R", "Y28E", "K39R", "R53H", "A54T", "T62A", "T82R", "D108G", "K115E"], "tat": ["A21P", "P59S", "S62C", "L74R"], "vif": ["I9V", "V31I", "S39F", "R41K", "R67K", "H80Q", "N95S", "D117E", "S137A", "K167R", "N190H"], "vpr": ["A4T", "N28A", "E58V", "I84L"], "vpu": ["T2S", "V21I", "K35R", "R37K", "K38R", "V43I", "R47E", "D69N"]}, "labels": {"aa": "INT: L74I, V165I, K215N, D279G, G283S; RT-p51: V8I, E44G, E169D, G196E, Q207T, T312N, Q334H, R366K, T403A; RT-p66: V8I, E44G, E169D, G196E, Q207T, T312N, Q334H, R366K, T403A, L469I, L479F, H480Q, S491P, E514D, E516A; gp120: H33Q, E34D, T35P, P57L, L58M, N66D, N102D, T104S, D105A, -109V, -111L, -112T, -113N, -114S, -115T, -116Y, -117P, -118T, -119N, -120A, -121P, -122E, -123K, -124I, K140R, K141E, Q142K, Q155E, D157E, N158G, N160S, K174R, V180M, I197M, F205V, E262S, I266V, I279V, H280S, T313K, H324K, I332K, H346L, -368P, -376G, -377N, N378E, -380I, -381T, -382G, -383S, -384G, V396I, G401E, V402T, N414H, V418A, N437T; gp41: M54L, V69I, K77R, F81L, I91T, Y108F, N113E, E119Q, N140I, D148E, A156T, D163N, T165S, N166K, F188S, D232G, R233K, V235I, H258R, L264G, I290A, A306T; nef: S8N, S9K, E63D, C163S, E174D, E176D, E197Q; p17: V7I, K18R, K26R, M61I, S66P, T67A, T81L, R91K, S124K, N125-, S126-, K127-; p2: Q6H, T8Q, N9G, -11A, -12G; p24: L15I, E71D, E79D, P123A, A204S, T210S; p6: G18E, S24P, K31I, P37-, P38-, I39-; pro: K45R, K70R; rev: K20R, Y28E, K39R, R53H, A54T, T62A, T82R, D108G, K115E; tat: A21P, P59S, S62C, L74R; vif: I9V, V31I, S39F, R41K, R67K, H80Q, N95S, D117E, S137A, K167R, N190H; vpr: A4T, N28A, E58V, I84L; vpu: T2S, V21I, K35R, R37K, K38R, V43I, R47E, D69N"}}}, {"name": "CRF100_01C_NODE_0000001", "node_attrs": {"div": 0.14014, "clade_membership": {"value": "CRF100_01C"}}, "branch_attrs": {"mutations": {"nuc": ["A3120T", "T7159A", "G7702C", "G8253C", "T9097G"], "RT-p51": ["Y342F"], "RT-p66": ["Y342F"], "gp120": ["H259Q"], "gp41": ["R317T"], "nef": ["I133T"], "vif": ["R131H"]}, "labels": {"aa": "RT-p51: Y342F; RT-p66: Y342F; gp120: H259Q; gp41: R317T; nef: I133T; vif: R131H"}}, "children": [{"name": "MH909568", "node_attrs": {"div": 0.16635999999999998, "accession": "MH909568", "clade_membership": {"value": "CRF100_01C"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "YNLC27"}, "LANL_subtype": {"value": "CRF100_01C"}}, "branch_attrs": {"mutations": {"nuc": ["A263G", "T303A", "A419G", "A429G", "G471A", "C558T", "T560A", "G579A", "G614T", "A656G", "T767C", "T774G", "G978C", "C981A", "A1025T", "G1127A", "G1139A", "A1167T", "A1176G", "G1192A", "G1199A", "A1263T", "C1440A", "G1452A", "A1473C", "A1492C", "A1532G", "C1541A", "A1743-", "C1744-", "C1745A", "-1746T", "-1747C", "-1748T", "T1749C", "C1751T", "C1753A", "A1754T", "T1756-", "A1775T", "A1845C", "G1852A", "A1882T", "G1963A", "C1979G", "C1985T", "T1986G", "A1992G", "T1999C", "A2056G", "T2080C", "A2089G", "G2117A", "G2155A", "G2201A", "A2230G", "T2365C", "A2563G", "A2611G", "T2803G", "A2809G", "T2917C", "T2933C", "G2984A", "A2992T", "T2998C", "A3026C", "C3030A", "G3162A", "G3192A", "G3211A", "A3216G", "A3403G", "T3433A", "A3493G", "A3520G", "A3595G", "C3712T", "A3808C", "G3816A", "A3862G", "G3877A", "A4093C", "T4135C", "G4294A", "A4427T", "A4474C", "A4525C", "A4671G", "A4688G", "T4774A", "A4784C", "C4820T", "C4826T", "G4855A", "A4863G", "G4870A", "G4978A", "A5049G", "G5114A", "G5153C", "C5154A", "T5162A", "A5223T", "T5292C", "C5447A", "C5578A", "G5587A", "G5620T", "A5621C", "A5623C", "T5624C", "A5626T", "G5627T", "T5628A", "C5641T", "G5668A", "G5686A", "C5687T", "T5704A", "T5705A", "G5711A", "G5729A", "T5896G", "T5899C", "T5917G", "A5955T", "C5964T", "G6029A", "A6090G", "T6109C", "A6119C", "C6145T", "G6167A", "-6170G", "-6171T", "-6172T", "-6173A", "-6174C", "-6175C", "T6178C", "G6179A", "T6180A", "A6186C", "A6188G", "C6196A", "C6198G", "A6204G", "A6208T", "A6209T", "A6211G", "T6219G", "A6220G", "G6253A", "A6275C", "C6278A", "A6311T", "T6325A", "T6328C", "T6355G", "A6362G", "A6392G", "G6445A", "G6577A", "A6583C", "T6598C", "C6601T", "C6631A", "G6647A", "A6692C", "G6693A", "G6726A", "T6738C", "C6760T", "A6767G", "T6769A", "A6776G", "G6788A", "A6809G", "G6810A", "A6819G", "A6839G", "A6840G", "A6856G", "A6937C", "C6938T", "T6949C", "-6956A", "-6957G", "-6958A", "-6959A", "-6960G", "-6961A", "-6962A", "-6963A", "-6964T", "-6965G", "-6966A", "-6967A", "-6968A", "-6969G", "-6970C", "-6971A", "-6972T", "-6973C", "-6974A", "-6975C", "-6976G", "-6977G", "-6978A", "A6979T", "G6981A", "A6982T", "A6984G", "-6985C", "C6991A", "-6994T", "C7006-", "A7007-", "C7008-", "T7009-", "C7019A", "G7067A", "A7101G", "A7112G", "A7149T", "T7150A", "A7152C", "A7160G", "A7161G", "A7241C", "G7276A", "G7319A", "T7411G", "G7456A", "C7463A", "A7542G", "T7626A", "G7640A", "A7655G", "A7689C", "C7732T", "G7773A", "T7801C", "T7836C", "G7868A", "G7902A", "C7921T", "C7929T", "C7951A", "C7959T", "G7964A", "C8005A", "A8011C", "G8036T", "T8097C", "T8164C", "T8196C", "A8222T", "G8317A", "G8330T", "G8407A", "A8436C", "T8477C", "G8508A", "G8550A", "G8558T", "G8590C", "A8701T", "C8768T", "T8800C", "G8808A", "A8812G", "G8818A", "A8819C", "A8827G", "A8870T", "G8885A", "T8904G", "G8933C", "A8950T", "A8954G", "A8970-", "C8971-", "T8972-", "T8973-", "T8974-", "C8975-", "T8976-", "G8977-", "A8979-", "A9060T", "C9068T", "G9132T", "G9136A"], "INT": ["E11D", "R14K", "T218S"], "RT-p51": ["V8I", "E36K", "I173V", "C280R", "K311Q", "T312N", "R356K", "R366K", "K374R"], "RT-p66": ["V8I", "E36K", "I173V", "C280R", "K311Q", "T312N", "R356K", "R366K", "K374R"], "gp120": ["D21E", "E34V", "A37V", "E59K", "D79G", "K89Q", "D105N", "-106L", "-107G", "-109R", "-111D", "M133I", "K141Q", "Q142K", "I153L", "D157E", "N158S", "N160S", "N167K", "T170A", "E265K", "R291K", "D294A", "I305V", "T308A", "E312K", "S319D", "K322R", "N327-", "K329G", "K361N", "-368R", "-369R", "-370N", "-371E", "-372S", "-373I", "-374T", "-375D", "-376D", "-377S", "N379K", "-380N", "T385-", "P389T", "A405T", "N416S", "N420D", "N433T", "N435T", "N436G", "I463L"], "gp41": ["A6T", "K80R", "F81L", "I118V", "N129T", "S157N", "V178A", "A189T", "G200E", "P209L", "N210T", "P219L", "G221R", "A245L", "L265S", "I298T", "T307S", "A343S"], "nef": ["R22Q", "K32Q", "V70I", "G83A", "Y120F", "K151R", "V153A", "D156N", "N157S", "G159D", "N162S", "E176D", "S188A", "E197D", "Y203F"], "p17": ["K32E", "V46I", "V82I", "E93D", "I107M"], "p2": ["Q6N"], "p24": ["L15V", "V83L", "H84N", "E98D", "E128D", "S146C", "S149G", "R154K", "T178S"], "p6": ["M21I", "T22-", "P30Q", "-32D", "-33H", "-34P", "-35P", "P38S"], "p7": ["Q9P"], "pro": ["E16A", "Q61E", "L63C", "E65G"], "rev": ["K20R", "R53S", "I55L", "C63F", "S106P"], "tat": ["T24K", "P68T", "E71K", "T75P", "P81Q", "P84S"], "vif": ["M29V", "I63K", "R90K", "N93D", "T155A", "M189I", "H192Q"], "vpr": ["A4T", "A17Q", "L20I", "H40L", "I63T", "I84L"], "vpu": ["E5S", "V21I", "A27I", "K31R", "F33N", "R41K"]}, "labels": {"aa": "INT: E11D, R14K, T218S; RT-p51: V8I, E36K, I173V, C280R, K311Q, T312N, R356K, R366K, K374R; RT-p66: V8I, E36K, I173V, C280R, K311Q, T312N, R356K, R366K, K374R; gp120: D21E, E34V, A37V, E59K, D79G, K89Q, D105N, -106L, -107G, -109R, -111D, M133I, K141Q, Q142K, I153L, D157E, N158S, N160S, N167K, T170A, E265K, R291K, D294A, I305V, T308A, E312K, S319D, K322R, N327-, K329G, K361N, -368R, -369R, -370N, -371E, -372S, -373I, -374T, -375D, -376D, -377S, N379K, -380N, T385-, P389T, A405T, N416S, N420D, N433T, N435T, N436G, I463L; gp41: A6T, K80R, F81L, I118V, N129T, S157N, V178A, A189T, G200E, P209L, N210T, P219L, G221R, A245L, L265S, I298T, T307S, A343S; nef: R22Q, K32Q, V70I, G83A, Y120F, K151R, V153A, D156N, N157S, G159D, N162S, E176D, S188A, E197D, Y203F; p17: K32E, V46I, V82I, E93D, I107M; p2: Q6N; p24: L15V, V83L, H84N, E98D, E128D, S146C, S149G, R154K, T178S; p6: M21I, T22-, P30Q, -32D, -33H, -34P, -35P, P38S; p7: Q9P; pro: E16A, Q61E, L63C, E65G; rev: K20R, R53S, I55L, C63F, S106P; tat: T24K, P68T, E71K, T75P, P81Q, P84S; vif: M29V, I63K, R90K, N93D, T155A, M189I, H192Q; vpr: A4T, A17Q, L20I, H40L, I63T, I84L; vpu: E5S, V21I, A27I, K31R, F33N, R41K"}}}, {"name": "MH909570", "node_attrs": {"div": 0.16357999999999998, "accession": "MH909570", "clade_membership": {"value": "CRF100_01C"}, "country": {"value": "CN"}, "date": {"value": 2013.0}, "Strain_name": {"value": "YNLC30"}, "LANL_subtype": {"value": "CRF100_01C"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A426C", "A492T", "A503G", "G524A", "A534T", "A569G", "G579A", "G614A", "A715C", "T861G", "A873T", "A878T", "C879G", "A880G", "A881T", "A1017C", "G1022A", "C1115A", "G1127A", "C1136T", "C1137T", "G1298A", "C1385T", "G1415A", "T1421C", "C1442A", "G1452A", "A1538G", "A1657G", "G1734-", "A1735-", "G1736-", "A1740G", "T1741A", "C1744T", "C1745G", "-1746A", "-1747C", "-1748C", "C1752T", "A1771G", "T1791G", "A2012G", "T2041C", "A2149G", "C2236T", "G2248A", "C2453T", "C2499T", "G2507A", "T2527C", "T2613C", "C2714G", "A2734G", "A2752G", "T2770C", "C2890T", "T2935C", "C2942A", "G2951A", "C2960T", "C3023T", "A3136G", "C3160A", "C3222T", "A3251C", "C3266T", "C3500T", "C3541T", "G3685A", "C3712T", "G3769A", "G3787A", "A3880G", "T4126C", "T4153C", "C4210T", "T4234C", "G4243A", "C4396T", "A4528C", "A4567G", "G4573A", "A4656C", "A4696G", "A4751G", "G4769A", "G4870A", "C4937A", "G4978A", "A5045G", "G5131A", "T5237C", "G5246A", "A5247G", "T5260C", "T5355A", "C5397T", "G5418A", "G5444A", "T5451C", "A5462T", "A5482T", "T5515C", "G5556C", "G5574A", "A5576T", "T5577A", "A5581G", "G5635A", "T5636C", "A5640G", "G5699A", "G5711A", "C5727T", "C5731T", "A5805G", "T5899A", "A6001T", "A6030T", "A6094G", "A6158C", "G6167-", "A6168-", "T6169-", "A6187G", "A6194G", "A6201C", "-6202C", "-6203G", "G6205C", "A6207C", "A6208C", "T6217G", "G6253A", "C6263A", "G6280A", "C6286A", "C6317A", "A6320C", "G6327A", "A6330G", "G6336A", "A6338G", "A6443C", "T6460G", "A6471C", "A6476G", "C6477A", "C6482A", "A6553G", "C6631A", "T6641C", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "A6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6721T", "A6774G", "G6821A", "-6833A", "-6834A", "-6835T", "C6861A", "A6900T", "A6932T", "-6972G", "-6973T", "-6974A", "-6975G", "-6976G", "-6977A", "-6978G", "G6980T", "-6985A", "A6986C", "-6994G", "-6995T", "-6996A", "-6997A", "-6998G", "-6999G", "-7000C", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "C7024T", "C7084T", "T7090A", "T7102G", "G7123A", "C7165T", "A7269G", "A7322T", "G7366A", "A7373G", "A7375G", "C7544T", "A7633T", "G7640A", "T7656C", "T7681C", "C7691A", "A7692T", "G7701A", "G7717A", "A7753G", "A7820T", "T7843C", "T7913C", "T7930G", "C7932A", "A7962G", "C7984A", "T8047C", "G8110A", "T8113G", "A8128C", "C8129A", "C8131G", "A8132C", "T8167G", "A8204G", "G8216A", "G8219A", "G8239A", "G8241A", "C8321T", "A8329G", "C8369T", "G8388A", "T8414C", "A8531C", "A8643G", "G8738A", "G8762A", "C8789T", "G8794A", "G8818C", "A8823G", "A8827C", "A8837G", "G8888A", "C8917T", "C8948T", "A8969C", "A8970G", "A8980G", "T9012C", "G9016T", "G9132A"], "RT-p51": ["T135I", "E138K", "I173A", "Q207E", "L283I", "A286T", "T297A", "A376V", "T386P"], "RT-p66": ["T135I", "E138K", "I173A", "Q207E", "L283I", "A286T", "T297A", "A376V", "T386P"], "gp120": ["E59V", "N102H", "N108-", "T110-", "M133I", "L137I", "Q155K", "I156L", "N159R", "S161N", "K162N", "V180I", "I197L", "D202E", "N206T", "T208E", "P210T", "S263P", "S278G", "E307G", "E323K", "P336H", "N349I", "T360S", "-384D", "S412R", "N416K", "V432D", "N435T", "K472R"], "gp41": ["M7L", "I24V", "M54L", "Y108F", "E110D", "I118T", "Q130I", "G133D", "I173L", "E220G", "A245V", "I301V", "D305N", "A306T", "G313E"], "nef": ["V16I", "T56A", "E63D", "I101V", "G159A", "N161D", "N162T", "M182I", "T192I"], "p1": ["N9S"], "p17": ["V7I", "M31L", "T53S", "T67S", "V82I", "K127T"], "p24": ["S44A", "T48S", "Q50G", "M96L"], "p6": ["K31-", "P38A"], "pro": ["I72V"], "rev": ["R14T", "I21Y", "Y28E", "K39R", "S67P", "D88N", "C89G", "T94Q", "Q95G", "S107A"], "tat": ["S23N", "K29I", "I36L", "Y47H", "Q60H", "N67I", "I69V", "L74R", "K85E"], "vif": ["I24L", "K37R", "D117E", "G182D", "N190H"], "vpr": ["Y45H", "D48S"], "vpu": ["V10T"]}, "labels": {"aa": "RT-p51: T135I, E138K, I173A, Q207E, L283I, A286T, T297A, A376V, T386P; RT-p66: T135I, E138K, I173A, Q207E, L283I, A286T, T297A, A376V, T386P; gp120: E59V, N102H, N108-, T110-, M133I, L137I, Q155K, I156L, N159R, S161N, K162N, V180I, I197L, D202E, N206T, T208E, P210T, S263P, S278G, E307G, E323K, P336H, N349I, T360S, -384D, S412R, N416K, V432D, N435T, K472R; gp41: M7L, I24V, M54L, Y108F, E110D, I118T, Q130I, G133D, I173L, E220G, A245V, I301V, D305N, A306T, G313E; nef: V16I, T56A, E63D, I101V, G159A, N161D, N162T, M182I, T192I; p1: N9S; p17: V7I, M31L, T53S, T67S, V82I, K127T; p24: S44A, T48S, Q50G, M96L; p6: K31-, P38A; pro: I72V; rev: R14T, I21Y, Y28E, K39R, S67P, D88N, C89G, T94Q, Q95G, S107A; tat: S23N, K29I, I36L, Y47H, Q60H, N67I, I69V, L74R, K85E; vif: I24L, K37R, D117E, G182D, N190H; vpr: Y45H, D48S; vpu: V10T"}}}]}]}, {"name": "NODE_0000726", "node_attrs": {"div": 0.12087999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G956A", "T974C", "T992G", "C1061T", "C1280T", "-1783A", "G2215A", "G2222A", "C2236T", "C2299T", "C2302T", "A2329G", "G2332A", "G2463A", "A2519G", "G2539A", "T2632C", "G2707A", "A2752G", "G2869A", "G2951A", "C3253T", "G3877A", "T4129A", "G4243A", "T4543C", "A4695G", "C4761T", "G4769A", "G4786A", "T4799G", "G4805A", "A4816G", "G4817A", "C4826T", "G4856A", "C4857T", "A4858T", "C5047T", "G5059A", "G5418A", "G5448T", "G5545A", "A5784G", "G5893A", "-6172G", "-6202T", "-6205C", "T6364C", "T6717C", "A6752C", "A6818G", "G7534A", "A7541C", "T7622A", "A7962G", "G8019A", "G8030A", "A8032T", "T8047C", "C8223T", "G8239A", "G8404A", "G8421A", "G8486A", "T8505A", "T8636A", "A8717C", "G8846A", "A8924C"], "RT-p51": ["E43K", "I142V", "A286T"], "RT-p66": ["E43K", "I142V", "A286T"], "gp120": ["-106A", "K322E", "-380T"], "gp41": ["K80Q", "S107T", "E220G", "S239N"], "nef": ["R22Q", "A27T", "C55S", "D98E", "Q125H", "M168I"], "p24": ["H87Q"], "rev": ["T62S", "S67P"], "tat": ["G57R", "K85E"], "vif": ["K37E", "R67K", "K77R", "Q91L", "T154I", "R158K"]}, "labels": {"aa": "RT-p51: E43K, I142V, A286T; RT-p66: E43K, I142V, A286T; gp120: -106A, K322E, -380T; gp41: K80Q, S107T, E220G, S239N; nef: R22Q, A27T, C55S, D98E, Q125H, M168I; p24: H87Q; rev: T62S, S67P; tat: G57R, K85E; vif: K37E, R67K, K77R, Q91L, T154I, R158K"}}, "children": [{"name": "results/subtype_trees/CRF113_0107.nwk", "node_attrs": {"div": 0.16227, "clade_membership": {"value": "CRF113_0107"}}, "branch_attrs": {"mutations": {"nuc": ["C471G", "T473C", "T531C", "A585G", "C586T", "C590T", "G614A", "A697G", "A716C", "A758G", "G770A", "C771T", "C830T", "A854T", "A932G", "T1052C", "C1060A", "A1074G", "G1313A", "G1452A", "A1492C", "G1493A", "G1508A", "A1644C", "A1657G", "A1673C", "C1692A", "A1715G", "T1741C", "A1759G", "A1771G", "-1781C", "C1792T", "T1828C", "C1853A", "T1986C", "T2104C", "A2149C", "G2164A", "G2177A", "A2189G", "A2202C", "A2210G", "A2212T", "T2237A", "T2266C", "T2281C", "G2287A", "A2290G", "G2293A", "A2305G", "G2350A", "C2353T", "T2383C", "T2392A", "A2419G", "A2422G", "A2431G", "G2456C", "A2462G", "T2467C", "A2470G", "G2509A", "A2518G", "C2521T", "A2524G", "G2542T", "C2575T", "G2578A", "C2605T", "T2613A", "A2615C", "C2653T", "A2677G", "C2720T", "A2727G", "G2764A", "A2838T", "A2840C", "C2848T", "A2911T", "G3010A", "C3013T", "C3030A", "G3094A", "C3129A", "T3132A", "G3264A", "T3303C", "G3304A", "G3307A", "G3439A", "G3473A", "G3477A", "T3496G", "C3542T", "G3644A", "C3751T", "G3787A", "G3796A", "A3808G", "C3823T", "T3857C", "G3866A", "C3908T", "T3922A", "A3953C", "G3989A", "C4015T", "G4060A", "T4075C", "A4112G", "C4123T", "G4151T", "C4204T", "G4268A", "T4412C", "A4531G", "T4606C", "G4677A", "A4684G", "G4697T", "C4820G", "T4832A", "C4841T", "A4864G", "A4869G", "G4870C", "A4878C", "T4883A", "A4888G", "C4889T", "A4892G", "A4901G", "G4904A", "C4911T", "A4913G", "C4914T", "C4916T", "C4925T", "T4932G", "C4937A", "C4943T", "A4967T", "G4968A", "G4975T", "A4976T", "G4978C", "C4993A", "T4995G", "C5006T", "C5018T", "T5027C", "A5036G", "A5038C", "A5045G", "C5050A", "T5062G", "C5073T", "G5082A", "T5091C", "A5094G", "A5148T", "C5221A", "G5246A", "A5290G", "A5355G", "A5357G", "C5454T", "C5552A", "G5556A", "A5587G", "A5599C", "T5636C", "C5641T", "T5660C", "A5718G", "G5729A", "A5737G", "T5793A", "T5851G", "G5864A", "C5923T", "C5944T", "C5958G", "C5980T", "C5984T", "C6023T", "A6024T", "C6025T", "A6113G", "G6133A", "T6155C", "-6174A", "-6175G", "T6180A", "A6186G", "A6188T", "C6190A", "A6192C", "T6193C", "C6196T", "T6199C", "-6203G", "-6207G", "A6208C", "T6213G", "A6261T", "G6267C", "A6318C", "A6327G", "A6330G", "T6331C", "A6339G", "-6340T", "A6443C", "G6547A", "T6556C", "C6612G", "A6714G", "C6729T", "A6765T", "A6767G", "G6773A", "A6797G", "C6807A", "T6808G", "A6820G", "-6833A", "-6834A", "-6835G", "T6849A", "T6853C", "A6856G", "C6862T", "T6863G", "A6868G", "A6937G", "T6943C", "T6953-", "-6989G", "-6990A", "-6994T", "-6995A", "-6996A", "-6997A", "-6998G", "-7000T", "-7001A", "-7002A", "-7003T", "-7004G", "-7005A", "G7026A", "G7054A", "A7094G", "A7095T", "A7155G", "A7158C", "T7159A", "A7160G", "C7165T", "T7243A", "G7291T", "A7348C", "C7463A", "A7570C", "C7597T", "A7607T", "A7689G", "G7777A", "G7790A", "T7801C", "T7825C", "T7843C", "A7846G", "A7885G", "G7915A", "T7918G", "C7921G", "C7929T", "C7932T", "A7935C", "T7936G", "C7937A", "A7941C", "G7942A", "A7943G", "C7959T", "G7977A", "G7997A", "C8005G", "C8009A", "T8016C", "A8050C", "G8070T", "T8094G", "G8098A", "T8164C", "C8171T", "T8196C", "C8213T", "T8214A", "T8218C", "A8222G", "G8254A", "T8279G", "A8288G", "A8297G", "A8305G", "A8364-", "A8367-", "A8370-", "A8372-", "A8378-", "A8402G", "C8412G", "T8414A", "A8429G", "T8480C", "G8528A", "A8531G", "G8558A", "G8590A", "A8653G", "T8675C", "C8684T", "C8688A", "T8700A", "A8701T", "C8741T", "G8753A", "A8793G", "G8794C", "G8799A", "G8807A", "A8827G", "G8848A", "C8928A", "T8939C", "T8947A", "-8978A", "G8981A", "-9033G", "T9074G", "T9078C", "T9097G", "G9132A"], "INT": ["V31I", "I60L", "V72I", "I113V", "V126F", "V165I"], "RT-p51": ["E28K", "K32E", "E36A", "K39D", "S48T", "D121H", "S123D", "I173K", "K174Q", "E177D", "K211R", "E248V", "K249Q", "T312N", "P345Q", "F346Y", "R390K", "M403T"], "RT-p66": ["E28K", "K32E", "E36A", "K39D", "S48T", "D121H", "S123D", "I173K", "K174Q", "E177D", "K211R", "E248V", "K249Q", "T312N", "P345Q", "F346Y", "R390K", "M403T", "D460N", "R461K", "H483Y", "V517I"], "gp120": ["T35R", "H44Y", "H57F", "S87G", "R138T", "Q155P", "N158S", "N159S", "N160S", "V180I", "I197L", "A253G", "H280S", "Q287R", "V288A", "T292I", "E304V", "I305V", "E307K", "A318K", "S337A", "-379E", "-381K", "-383N", "-384E", "R391K", "N414V", "N434S", "N435T", "N437K", "E479D"], "gp41": ["T102S", "N129S", "D163N", "F206L", "P209L", "S210I", "H211P", "H212N", "Q213P", "R214G", "P219L", "G225E", "D232N", "V238A", "A243T", "A245V", "S256L", "I264S", "I298T", "L304Y", "T307V", "W326G", "I329V", "I332V"], "nef": ["I10-", "I20M", "M48I", "E64D", "G83E", "K104R", "H116N", "Y120I", "R151A", "V153I", "N162S", "S169N", "E174D", "F202Y"], "p1": ["I5L", "N9S"], "p17": ["L46V", "S66P", "T84V", "D121G", "K127N"], "p2": ["Q8T"], "p24": ["P14S", "T110N", "I115V"], "p6": ["P5T", "M21T", "P25L", "-26R", "K27-", "K31R", "E34D", "P38L", "L50S"], "p7": ["Q9P"], "pro": ["L19M", "D35E"], "rev": ["L13I", "R14K", "S30E", "E32R", "R50K", "R53G", "A54E", "T68P", "Q74P", "H82Q", "D84N", "S106P"], "tat": ["P59H", "K71E", "P75S", "I76R", "R78Q", "P84S"], "vif": ["V7A", "K33R", "E37D", "D78E", "N93R", "S95A", "I98L", "D99E", "D101G", "H110Y", "S116A", "D117E", "Q127H", "V128I", "R130I", "R131P", "P136Q", "S137A", "K151T", "T155K", "I159R", "V166I", "T188S"], "vpr": ["Y15F", "N28Q", "D48N", "I84V"], "vpu": ["V10A", "L18S", "R41K", "K44E", "D62E", "L82V"]}, "labels": {"aa": "INT: V31I, I60L, V72I, I113V, V126F, V165I; RT-p51: E28K, K32E, E36A, K39D, S48T, D121H, S123D, I173K, K174Q, E177D, K211R, E248V, K249Q, T312N, P345Q, F346Y, R390K, M403T; RT-p66: E28K, K32E, E36A, K39D, S48T, D121H, S123D, I173K, K174Q, E177D, K211R, E248V, K249Q, T312N, P345Q, F346Y, R390K, M403T, D460N, R461K, H483Y, V517I; gp120: T35R, H44Y, H57F, S87G, R138T, Q155P, N158S, N159S, N160S, V180I, I197L, A253G, H280S, Q287R, V288A, T292I, E304V, I305V, E307K, A318K, S337A, -379E, -381K, -383N, -384E, R391K, N414V, N434S, N435T, N437K, E479D; gp41: T102S, N129S, D163N, F206L, P209L, S210I, H211P, H212N, Q213P, R214G, P219L, G225E, D232N, V238A, A243T, A245V, S256L, I264S, I298T, L304Y, T307V, W326G, I329V, I332V; nef: I10-, I20M, M48I, E64D, G83E, K104R, H116N, Y120I, R151A, V153I, N162S, S169N, E174D, F202Y; p1: I5L, N9S; p17: L46V, S66P, T84V, D121G, K127N; p2: Q8T; p24: P14S, T110N, I115V; p6: P5T, M21T, P25L, -26R, K27-, K31R, E34D, P38L, L50S; p7: Q9P; pro: L19M, D35E; rev: L13I, R14K, S30E, E32R, R50K, R53G, A54E, T68P, Q74P, H82Q, D84N, S106P; tat: P59H, K71E, P75S, I76R, R78Q, P84S; vif: V7A, K33R, E37D, D78E, N93R, S95A, I98L, D99E, D101G, H110Y, S116A, D117E, Q127H, V128I, R130I, R131P, P136Q, S137A, K151T, T155K, I159R, V166I, T188S; vpr: Y15F, N28Q, D48N, I84V; vpu: V10A, L18S, R41K, K44E, D62E, L82V", "clade": "CRF113_0107"}}, "children": [{"name": "MW018135", "node_attrs": {"div": 0.18498, "accession": "MW018135", "clade_membership": {"value": "CRF113_0107"}, "country": {"value": "CN"}, "date": {"value": 2019.0}, "Strain_name": {"value": "BL3957_00"}, "LANL_subtype": {"value": "CRF113_0107"}}, "branch_attrs": {"mutations": {"nuc": ["-217T", "A303T", "A417C", "G424A", "G425A", "A509G", "A534G", "T570C", "T571A", "A576G", "C583T", "A611G", "G615A", "A645C", "G696A", "C710T", "G762A", "T763C", "G866A", "A1017T", "A1097G", "A1112G", "C1118T", "C1247T", "A1455-", "A1456-", "T1457-", "-1458A", "-1459A", "-1460C", "-1503A", "-1504T", "-1505T", "C1511T", "A1525G", "A1562G", "G1619C", "T1679C", "A1709G", "C1781T", "A1819G", "A1832G", "T1903G", "C1985G", "A2098C", "T2212G", "A2362G", "A2569G", "T2605A", "G2683A", "A2710G", "C2857A", "T2885C", "A2974G", "T3207C", "C3376T", "G3463A", "C3499T", "G3523A", "G3538A", "G3553A", "T3755G", "A3836G", "G4182A", "A4228G", "C4652T", "T4667C", "C4679T", "A4682T", "G4685A", "A4693G", "A4694T", "A4696G", "T4697A", "C4702T", "T4706C", "A4721G", "C4725A", "A4726G", "G4727A", "T4991C", "A4994C", "G4995A", "A5099G", "C5125T", "C5168T", "G5176A", "A5187T", "C5234G", "T5237C", "T5292C", "T5415A", "T5475C", "A5499G", "A5534G", "G5535A", "A5537C", "A5567C", "A5576C", "A5581C", "G5620T", "A5621C", "T5731A", "G5775A", "C5787T", "A5865C", "G5907A", "-6170G", "T6171C", "G6172T", "A6176C", "A6177T", "T6178G", "G6179A", "A6182G", "C6184T", "C6189T", "A6190G", "A6197C", "C6199A", "T6202C", "G6203A", "A6204C", "C6205G", "G6207C", "A6211T", "A6214C", "A6216T", "-6217A", "T6219G", "C6222A", "G6260T", "C6263G", "A6266T", "G6336A", "T6340C", "T6358C", "C6416T", "A6508G", "C6559T", "A6581G", "C6599A", "A6779G", "G6788A", "G6835T", "C6861A", "A6881G", "A6884C", "C6885A", "G6906A", "C6938T", "A6947G", "G6948A", "T6949A", "T6952C", "-6953A", "-6955T", "G6998A", "-6999C", "T7000C", "A7002G", "C7008G", "A7044G", "C7045A", "T7102G", "T7150G", "T7165G", "C7170T", "T7180A", "A7197G", "G7212A", "A7492G", "G7568A", "A7574G", "C7642T", "A7651C", "A7657G", "G7658C", "G7666T", "G7668A", "T7675C", "C7678T", "C7691A", "A7692T", "G7700A", "A7701G", "A7703T", "A7705G", "A7709G", "C7710A", "A7713T", "A7714C", "G7720A", "C7792T", "C7801A", "T7876C", "C7939A", "A7947G", "G8006C", "A8011C", "C8047T", "C8287T", "A8362G", "-8364A", "-8367A", "-8370T", "-8372A", "-8378A", "C8385A", "G8392T", "A8407G", "G8469A", "G8508A", "A8536G", "A8580T", "C8640T", "G8787A", "G8804A", "G8808T", "G8864C", "A8922C", "C8924T", "C8934A"], "INT": ["T21A", "R136Q"], "RT-p51": ["D39E", "V371A"], "RT-p66": ["D39E", "V371A", "S554A"], "gp120": ["D4T", "R18K", "-107K", "-109L", "-111D", "E136L", "L137V", "T138S", "S161N", "H188Y", "I243V", "L249I", "K309E", "E312K", "K315E", "I332N", "P336H", "I343V", "T344Q", "R351K", "S365E", "-377S", "E379D", "-382T", "N383S", "E384D", "T385S", "N397R", "N416K", "N432K", "T436D", "T439I", "K448R", "S453N"], "gp41": ["G89S", "I91V", "I118M", "E119Q", "E121D", "R122K", "Q130I", "E133R", "I134L", "T136E", "E137V", "N166K", "N212K", "E215G", "V235L", "R236S"], "nef": ["K7R", "-10L", "Q15K", "R17M", "R21K", "Q22R", "V43I", "V56I", "T80S", "D149N", "D156Y", "I194L", "L198M"], "p17": ["K28Q", "R30K", "T67A", "F79H", "T81A", "A83V", "I92M", "V94I", "I104L", "G121S"], "p24": ["V11T", "M96L"], "p6": ["N47S"], "p7": ["-13I", "K20R", "E51D"], "pro": ["T12A", "L63A"], "rev": ["S7D", "T8P", "I18L", "I21L", "P31T", "G53A", "I55L", "S61N", "P67S"], "tat": ["H13Q", "K53R", "H54P", "D64A", "N67T", "I69L", "T77N", "N80D"], "vif": ["K36S", "D37G", "S39F", "Q47R", "Q136H", "A137T", "T170A", "T180I"], "vpr": ["Q28I", "Q44E", "Y45H", "I63T"], "vpu": ["E5S", "L42I"]}, "labels": {"aa": "INT: T21A, R136Q; RT-p51: D39E, V371A; RT-p66: D39E, V371A, S554A; gp120: D4T, R18K, -107K, -109L, -111D, E136L, L137V, T138S, S161N, H188Y, I243V, L249I, K309E, E312K, K315E, I332N, P336H, I343V, T344Q, R351K, S365E, -377S, E379D, -382T, N383S, E384D, T385S, N397R, N416K, N432K, T436D, T439I, K448R, S453N; gp41: G89S, I91V, I118M, E119Q, E121D, R122K, Q130I, E133R, I134L, T136E, E137V, N166K, N212K, E215G, V235L, R236S; nef: K7R, -10L, Q15K, R17M, R21K, Q22R, V43I, V56I, T80S, D149N, D156Y, I194L, L198M; p17: K28Q, R30K, T67A, F79H, T81A, A83V, I92M, V94I, I104L, G121S; p24: V11T, M96L; p6: N47S; p7: -13I, K20R, E51D; pro: T12A, L63A; rev: S7D, T8P, I18L, I21L, P31T, G53A, I55L, S61N, P67S; tat: H13Q, K53R, H54P, D64A, N67T, I69L, T77N, N80D; vif: K36S, D37G, S39F, Q47R, Q136H, A137T, T170A, T180I; vpr: Q28I, Q44E, Y45H, I63T; vpu: E5S, L42I"}}}, {"name": "CRF113_0107_NODE_0000001", "node_attrs": {"div": 0.16342, "clade_membership": {"value": "CRF113_0107"}}, "branch_attrs": {"mutations": {"nuc": ["A1263T", "T2129C", "A2413G", "T3380C", "T4085C", "A4650C", "G4708A", "G4737A", "A5134G", "A5140G", "C5146A", "T5162C", "A5167G", "G5170T", "T5171C", "T5182C", "A5185G", "A5186C", "T5188G", "T5412G", "A6201C", "G6743A", "A6798G", "G7040A", "C7684T", "G7759A", "G8365-", "T8366-", "G8368-", "C8369-", "T8371-", "G8373-", "T8374-", "G8375-", "G8376-", "G8377-", "T8800G", "C9023A"], "gp120": ["D297N", "-326K", "N328-", "V396I"], "nef": ["S8-", "S9-", "V11-", "G12-", "I153R"], "p24": ["T178S"], "tat": ["N12K"], "vif": ["N22H", "R41K", "H183R", "E185G", "P187H"]}, "labels": {"aa": "gp120: D297N, -326K, N328-, V396I; nef: S8-, S9-, V11-, G12-, I153R; p24: T178S; tat: N12K; vif: N22H, R41K, H183R, E185G, P187H"}}, "children": [{"name": "MW018131", "node_attrs": {"div": 0.18498, "accession": "MW018131", "clade_membership": {"value": "CRF113_0107"}, "country": {"value": "CN"}, "date": {"value": 2019.0}, "Strain_name": {"value": "19110001"}, "LANL_subtype": {"value": "CRF113_0107"}}, "branch_attrs": {"mutations": {"nuc": ["G1019A", "C1040T", "T1061C", "G1074A", "G1077A", "G1078C", "G1090A", "G1199A", "T1334C", "T1335C", "A1452G", "A1526G", "C1550T", "A1643G", "T1676C", "G1715A", "-1746T", "-1747C", "-1748C", "T1752-", "C1753-", "A1754-", "A1772G", "G1794A", "A1857T", "T1978A", "A2005G", "A2182G", "A2237T", "T2257C", "A2397G", "A2592G", "G2947A", "C3178T", "A3283G", "A3406G", "T3497A", "T3577C", "C3712T", "G3715A", "T4015C", "G4063A", "T4123C", "A4129T", "G4252A", "G4582A", "G4622A", "G4642A", "A4646T", "G4684A", "A4778G", "G4779A", "T4972G", "T5028C", "C5052A", "A5059G", "T5073C", "C5095T", "T5147C", "T5206C", "C5222T", "G5272A", "T5293A", "T5448G", "T5467G", "G5468T", "C5482A", "A5555C", "C5599T", "C5660T", "G5692C", "T5695A", "A5701G", "C5707A", "T5708G", "G5718A", "A5729G", "G5734A", "G5784A", "A5790C", "A5793T", "G5856A", "A5864G", "T5896G", "G5915A", "T5923C", "T5980C", "T6023C", "G6029A", "G6079A", "C6110G", "C6166T", "T6169A", "-6170T", "T6181G", "C6192A", "G6195A", "C6198T", "A6204T", "-6217T", "A6228T", "T6250A", "T6261A", "G6330A", "C6331T", "G6339A", "G6346A", "T6385C", "A6448G", "T6466G", "G6481A", "C6483A", "A6484G", "T6487C", "A6488C", "A6490T", "C6496T", "T6688-", "A6689-", "T6690-", "A6691-", "A6692-", "G6693-", "-6697A", "-6698C", "-6699A", "-6700C", "-6701A", "-6702T", "A6725G", "A6730G", "A6807T", "G6808T", "A6849T", "T6876C", "G6948T", "T6949-", "A6950-", "C6951-", "T6952-", "G6954-", "-6985A", "C6991A", "T6994C", "A6996G", "A6997T", "-6999G", "A7005G", "C7012A", "A7013G", "A7026G", "G7094T", "G7106T", "A7148G", "A7149G", "G7155A", "C7158G", "A7159T", "G7160A", "T7162A", "A7164T", "T7180G", "A7269G", "T7291G", "G7589C", "C7603T", "G7633A", "G7640T", "A7693G", "C7732A", "A7734G", "A7777G", "A7796T", "A7798C", "G7831A", "T7876A", "G7936A", "C7941A", "A7942G", "G7961A", "A7964G", "A8030G", "C8164T", "A8193C", "C8196T", "G8222A", "A8227C", "C8277T", "G8288A", "C8294A", "A8338T", "A8403C", "A8421G", "A8486-", "-8492T", "T8504C", "G8561A", "A8573G", "A8584T", "A8636T", "T8687C", "A8700T", "T8711C", "C8717A", "G8827A", "A8870G", "A8873C", "A8917G", "G8945T", "A8977G", "C9068T", "C9078T", "C9115T"], "INT": ["G283S"], "RT-p51": ["T48S", "K101R", "K166R"], "RT-p66": ["T48S", "K101R", "K166R", "S468T"], "gp120": ["S1N", "D21N", "F57L", "E59K", "Q86E", "D105N", "N108-", "T110-", "V126L", "R127K", "N132K", "S160N", "N204K", "P210Q", "K212H", "S280H", "R291G", "I292M", "K315G", "K318I", "L341P", "S365I", "T366-", "K381S", "-382G", "E384G", "I387V", "K391R", "V414L", "V418L", "N432G", "S434N", "T435S", "T436I", "K472R", "D479E"], "gp41": ["A96P", "D113Y", "D143E", "K144R", "T165S", "M176I", "P213Q", "G220R", "R221G", "T243A", "K297T", "T298I", "V307I", "A325V", "V329I", "H331N"], "nef": ["R21Q", "T27A", "D64E", "Y81F", "E98D", "I120F", "H125Q", "S162N", "D174E", "E177D", "K192R", "E201D"], "p2": ["T8Q", "N9H", "-11A", "-12N"], "p24": ["M96I", "V115I", "G116T", "S120N"], "p6": ["V39I"], "pro": ["K20I", "E35D", "D60E", "L63P"], "rev": ["K14Q", "E30K", "R32G", "R38Q", "K39R", "P106S", "K115N"], "tat": ["N24K", "C31V", "L36I", "Q60P", "R76Q", "Q78R"], "vif": ["R19K", "R33K", "V51I", "V65I", "V129G", "P156T", "K158R", "T170V"], "vpr": ["F15L", "H40Y"], "vpu": ["S18L", "E29Q", "F30I", "K32E", "L34R", "K41R", "V43I", "E62D"]}, "labels": {"aa": "INT: G283S; RT-p51: T48S, K101R, K166R; RT-p66: T48S, K101R, K166R, S468T; gp120: S1N, D21N, F57L, E59K, Q86E, D105N, N108-, T110-, V126L, R127K, N132K, S160N, N204K, P210Q, K212H, S280H, R291G, I292M, K315G, K318I, L341P, S365I, T366-, K381S, -382G, E384G, I387V, K391R, V414L, V418L, N432G, S434N, T435S, T436I, K472R, D479E; gp41: A96P, D113Y, D143E, K144R, T165S, M176I, P213Q, G220R, R221G, T243A, K297T, T298I, V307I, A325V, V329I, H331N; nef: R21Q, T27A, D64E, Y81F, E98D, I120F, H125Q, S162N, D174E, E177D, K192R, E201D; p2: T8Q, N9H, -11A, -12N; p24: M96I, V115I, G116T, S120N; p6: V39I; pro: K20I, E35D, D60E, L63P; rev: K14Q, E30K, R32G, R38Q, K39R, P106S, K115N; tat: N24K, C31V, L36I, Q60P, R76Q, Q78R; vif: R19K, R33K, V51I, V65I, V129G, P156T, K158R, T170V; vpr: F15L, H40Y; vpu: S18L, E29Q, F30I, K32E, L34R, K41R, V43I, E62D"}}}, {"name": "MW018132", "node_attrs": {"div": 0.18380000000000002, "accession": "MW018132", "clade_membership": {"value": "CRF113_0107"}, "country": {"value": "CN"}, "date": {"value": 2017.0}, "Strain_name": {"value": "BL3128_00"}, "LANL_subtype": {"value": "CRF113_0107"}}, "branch_attrs": {"mutations": {"nuc": ["T213C", "T214G", "-217A", "T288C", "T435C", "G579T", "C587T", "G607A", "A614C", "A643G", "C713T", "A715G", "C716T", "G755A", "C950T", "G992T", "T1055C", "A1176G", "C1187T", "A1253G", "G1268A", "G1586A", "T1784C", "C1828T", "A1841G", "A1853C", "G1855A", "T1864C", "T1903A", "A1908G", "G1969A", "C1986T", "T2080C", "A2128T", "C2335A", "A2377C", "C2456T", "G2473A", "A2545G", "A2612G", "C2694T", "G2765A", "T2860C", "C2944T", "A2950G", "T2953C", "A3132G", "C3232T", "A3264G", "C3294T", "A3502G", "G3664A", "G3685A", "T3820C", "C3970T", "C4006T", "G4112A", "C4144T", "G4145A", "C4146A", "A4268G", "A4293G", "G4294A", "G4550A", "A4564G", "T4678A", "T4691A", "G4695A", "A4739G", "G4799T", "T4800C", "A4805G", "A4988C", "T5006A", "C5019T", "A5042T", "A5051G", "G5062T", "A5082G", "C5091T", "G5094A", "A5221C", "T5293G", "T5439C", "C5491T", "A5545G", "G5587A", "A5611T", "A5622C", "C5636T", "C5658T", "T5696A", "G5939A", "T5944C", "G5958C", "C5974T", "C6067A", "C6097T", "C6155T", "-6170C", "A6174C", "G6175C", "T6178A", "G6179T", "A6180T", "T6181A", "A6185C", "G6186A", "T6187G", "T6188A", "C6189A", "A6190T", "A6191G", "C6193T", "G6195C", "A6197G", "C6198G", "A6200C", "A6211C", "-6217C", "A6254C", "C6255A", "A6288C", "G6323C", "T6325A", "G6327A", "G6336C", "T6412C", "C6443A", "G6605A", "G6612T", "A6672G", "-6697G", "A6703-", "A6734G", "T6735A", "A6736C", "G6764A", "T6765A", "A6771G", "A6776G", "G6797A", "A6848G", "C6850A", "C6951A", "-6953G", "G6954A", "-6955A", "-6956A", "-6957C", "-6958C", "-6959A", "-6960G", "-6961G", "-6962A", "-6963A", "-6964T", "-6965A", "-6966C", "-6967A", "-6974A", "-6975C", "-6976A", "-6977A", "-6978A", "-6979G", "-6980C", "-6981T", "-6982G", "-6983T", "-6984T", "-6985C", "G6989A", "A6990G", "C6991T", "C6993A", "A6995G", "-6999A", "C7006A", "G7072A", "A7085G", "C7127A", "A7151G", "T7153G", "A7157G", "C7158T", "A7161C", "A7193C", "G7195A", "A7216G", "G7369A", "A7630T", "T7747G", "A7818G", "C7843T", "G7846A", "A7915G", "G7965A", "G8005T", "C8016T", "A8029C", "C8038G", "G8079A", "C8202T", "C8218T", "G8267A", "G8279T", "G8281C", "A8314G", "G8402A", "A8404G", "G8429A", "G8534C", "T8539A", "A8540G", "C8543G", "A8558G", "T8567G", "G8589C", "T8594C", "G8653A", "A8823T", "G8864T", "C8924A", "T8935A", "C8939T", "G9016A", "A9132T", "A9134-"], "INT": ["V113I", "A124N", "I165V", "K173R", "V259I"], "RT-p51": ["K11N", "H121Y", "K173E", "T200I", "E224K", "Y346C", "K390R", "T400I"], "RT-p66": ["K11N", "H121Y", "K173E", "T200I", "E224K", "Y346C", "K390R", "T400I"], "gp120": ["D4N", "D29N", "R35T", "N71K", "-107T", "-109V", "-111D", "T134H", "E136V", "Y145S", "D157Q", "S158N", "S161T", "L197I", "D251N", "G253V", "N273S", "I281M", "V304K", "N306S", "T308A", "K315R", "I332E", "T366N", "-367E", "-368T", "-369R", "-370N", "-371T", "-372T", "-373K", "-374L", "-375F", "-376N", "-377S", "K381R", "-382D", "M406I", "I411V", "L425I", "N433E", "T435V", "T436A", "K437N", "M447L"], "gp41": ["E109D", "D148E", "K172R", "R221K", "A238V", "L242F", "R259H", "A300V", "A322T", "G326C"], "nef": ["M20I", "E83Q", "R104K", "N161Y", "L198Q"], "p17": ["V82L", "R91K", "E93D", "K103R", "N127S"], "p24": ["Q87H", "S149G"], "p6": ["S50L"], "pro": ["I15V", "M19L", "N37S"], "rev": ["G53C", "S61H", "L64V"], "tat": ["R57G", "E71K", "E86K"], "vif": ["I31N", "D37N", "V51M", "E134D", "R159I", "I166V"], "vpr": ["I63M"], "vpu": ["T2S", "E5D", "A10V", "F30Y"]}, "labels": {"aa": "INT: V113I, A124N, I165V, K173R, V259I; RT-p51: K11N, H121Y, K173E, T200I, E224K, Y346C, K390R, T400I; RT-p66: K11N, H121Y, K173E, T200I, E224K, Y346C, K390R, T400I; gp120: D4N, D29N, R35T, N71K, -107T, -109V, -111D, T134H, E136V, Y145S, D157Q, S158N, S161T, L197I, D251N, G253V, N273S, I281M, V304K, N306S, T308A, K315R, I332E, T366N, -367E, -368T, -369R, -370N, -371T, -372T, -373K, -374L, -375F, -376N, -377S, K381R, -382D, M406I, I411V, L425I, N433E, T435V, T436A, K437N, M447L; gp41: E109D, D148E, K172R, R221K, A238V, L242F, R259H, A300V, A322T, G326C; nef: M20I, E83Q, R104K, N161Y, L198Q; p17: V82L, R91K, E93D, K103R, N127S; p24: Q87H, S149G; p6: S50L; pro: I15V, M19L, N37S; rev: G53C, S61H, L64V; tat: R57G, E71K, E86K; vif: I31N, D37N, V51M, E134D, R159I, I166V; vpr: I63M; vpu: T2S, E5D, A10V, F30Y"}}}]}]}, {"name": "results/subtype_trees/CRF111_01C.nwk", "node_attrs": {"div": 0.16154, "clade_membership": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["G101A", "-162G", "-163A", "-164G", "-165T", "-166A", "G361C", "G458A", "C467T", "C583T", "G614T", "A647G", "G665A", "C668T", "C669A", "C672A", "A709G", "A725C", "T728C", "A758T", "G803A", "G810A", "T852A", "T936C", "G978A", "C1005G", "A1007C", "G1016A", "G1019A", "G1022A", "A1067G", "A1070G", "G1077C", "G1078A", "C1091T", "G1109A", "C1115A", "G1127A", "C1136A", "A1142G", "G1192A", "A1205G", "C1214T", "A1230C", "A1237T", "C1245T", "C1247A", "A1253T", "G1268A", "G1271T", "A1292C", "C1299A", "T1316C", "C1322T", "T1329A", "A1339G", "A1350C", "A1355G", "A1370G", "A1442T", "T1451G", "-1458G", "-1459T", "-1460A", "C1517T", "C1523T", "A1656-", "A1657-", "C1658-", "A1719G", "T1729A", "A1743-", "C1744-", "C1745-", "-1746A", "-1747A", "-1748T", "C1753T", "T1756C", "A1772G", "-1781G", "C1786A", "T1796C", "C1826A", "T1828G", "G1845A", "T2062C", "A2075G", "T2101C", "G2117A", "A2154G", "A2179G", "C2335T", "T2392C", "T2453C", "A2500C", "A2611G", "C2626A", "C2644T", "T2654C", "G2686A", "A2693G", "C2708T", "C2714G", "G2725A", "A2842G", "C2857T", "T2908C", "C2968A", "A2969G", "G3019A", "C3067A", "A3088G", "G3097A", "T3131C", "C3160A", "A3200G", "A3224C", "C3225T", "A3230T", "C3252T", "A3292C", "T3346C", "A3400G", "T3433C", "C3469A", "T3602C", "A3637C", "A3643G", "G3644T", "C3712T", "T3820C", "T3850C", "A3907G", "T3946C", "C3991T", "C4117T", "C4181A", "G4182A", "G4186A", "A4219G", "T4234C", "C4258T", "G4276T", "A4285G", "T4656C", "G4673A", "G4749A", "A4766G", "C4820T", "A4864C", "A4900G", "A5065G", "T5147C", "G5272A", "A5299G", "G5363A", "A5426G", "C5432T", "G5444A", "T5467A", "C5469T", "C5479T", "A5481C", "C5482T", "G5532A", "A5576T", "A5581C", "G5589C", "A5594G", "G5619A", "G5673T", "G5686T", "C5687T", "A5694G", "T5696G", "A5704G", "C5727T", "G5775A", "A5817G", "A5848G", "G5872A", "T5917G", "G5954A", "C6026A", "G6076A", "C6110G", "C6116T", "T6142C", "G6149A", "G6167A", "-6170T", "G6195C", "C6196A", "T6199A", "-6203A", "-6207C", "G6218A", "T6241C", "C6263A", "A6292G", "T6310C", "G6333A", "G6346A", "T6385C", "A6392G", "A6425G", "T6457G", "G6463A", "C6559T", "T6562C", "C6586T", "C6601G", "G6605A", "C6619A", "G6628A", "C6631T", "A6638C", "C6652T", "A6653G", "A6654T", "T6655A", "C6661A", "T6668A", "C6669A", "C6684A", "A6685G", "T6694G", "G6716A", "A6725G", "G6726C", "T6745C", "A6748T", "T6758C", "G6764A", "G6766C", "C6777A", "A6778T", "A6797C", "C6800A", "G6802T", "C6807G", "A6810G", "G6823A", "T6829C", "T6838C", "G6841A", "C6850A", "C6854G", "A6855C", "C6860G", "A6871G", "T6874C", "T6888C", "G6889A", "C6893A", "A6894G", "T6895C", "A6905G", "G6910A", "C6925T", "A6932T", "A6935G", "A6936G", "A6937C", "T6952A", "G6954A", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964T", "-6965A", "-6966C", "-6967A", "-6968T", "C6991T", "T7009C", "T7014C", "C7016A", "T7018C", "G7027A", "G7033A", "G7056A", "A7057G", "A7065G", "T7078C", "C7087T", "A7088G", "G7089C", "T7090A", "A7096C", "T7099A", "A7101C", "T7102A", "G7106A", "T7107A", "A7161C", "C7174T", "A7190G", "A7197G", "A7256G", "A7269G", "A7402G", "A7570G", "G7666T", "G7677A", "A7689C", "A7692T", "A7703T", "C7706A", "G7712A", "G7717A", "A7721G", "A7734G", "A7753G", "G7807A", "C7926T", "A7931T", "A7935T", "A8029G", "C8031G", "T8037C", "C8069T", "G8105A", "G8130A", "T8182G", "T8203C", "G8219A", "C8268T", "A8284G", "C8287T", "C8291A", "T8302C", "A8329G", "T8366C", "G8393A", "G8394C", "C8514T", "T8594A", "T8603C", "C8640T", "C8651T", "A8660G", "A8678G", "T8786A", "A8917G", "T8935A", "G8936A", "A8942G", "C8948T", "T8951C", "A8966C", "A8970-", "G8971-", "T8972-", "T8973-", "T8974-", "C8975-", "T8976-", "A8977-", "C8979-", "T8980A", "-8988T", "T8993-", "T9012C", "C9017T", "C9018T", "G9019T", "A9026G", "G9027A", "T9028C", "C9039T", "A9060T", "A9134T"], "INT": ["R136K", "E167D"], "RT-p51": ["V8I", "K20R", "S123N", "T200A", "Q207E", "D291E", "I292V", "D324E", "F346L", "T369A", "T377L", "S379C", "T386I", "E399D"], "RT-p66": ["V8I", "K20R", "S123N", "T200A", "Q207E", "D291E", "I292V", "D324E", "F346L", "T369A", "T377L", "S379C", "T386I", "E399D", "E514D", "V517L"], "gp120": ["D21E", "E34K", "L58M", "Q86E", "V99I", "D105N", "-107N", "-111N", "-112T", "L137I", "T191A", "N201K", "D251N", "K262Q", "N267V", "S272N", "T277K", "H280R", "V288T", "R291A", "Y302H", "E304N", "T308S", "K315Q", "Q316N", "A318S", "K319R", "Q334A", "P336A", "L341P", "M345T", "H347S", "R351G", "T360S", "K361G", "-367Y", "I387T", "L388I", "G401E", "Q404R", "S412A", "N416T", "V418K", "N432V", "N446D", "K448R", "I468V", "K472R"], "gp41": ["M54L", "E121D", "S125N", "N129T", "Q130L", "I134L", "L135I", "E137K", "N140D", "K144R", "T208I", "H211L", "A243S", "S256C", "A268T", "R277L", "A306T", "A322V", "L330I"], "nef": ["E18Q", "K192R", "L198Q"], "p1": ["N9-"], "p17": ["S9T", "A83V", "E93D", "I104M", "Q112K", "Q113S", "T115A", "N125S", "Q130H"], "p2": ["Q6H", "N9Q", "-10A", "-11N", "-12V"], "p24": ["Q9H", "V27I", "S41T", "V83I", "P92A", "M96I", "G116Q", "D128E", "R154K", "Y169F", "E180D", "E187D", "L190I", "S200T", "K203R", "T207P"], "p6": ["N14D", "M17K", "T22N", "S24L", "P36H", "V39S", "L50W"], "pro": ["L10M", "G16E"], "rev": ["G6E", "I21F", "S25T", "Y28F", "S61E", "Q74L", "S86D", "V108A", "S112A"], "tat": ["Q17R", "T19I", "S23N", "C31S", "Q35Y", "N67I", "I69L", "K71N", "P73S", "I76F"], "vif": ["I31V", "V55I", "K63R", "N93T", "Q105R", "K160R"], "vpr": ["Y15H"], "vpu": ["A27F", "F30C", "I33V", "N81D"]}, "labels": {"aa": "INT: R136K, E167D; RT-p51: V8I, K20R, S123N, T200A, Q207E, D291E, I292V, D324E, F346L, T369A, T377L, S379C, T386I, E399D; RT-p66: V8I, K20R, S123N, T200A, Q207E, D291E, I292V, D324E, F346L, T369A, T377L, S379C, T386I, E399D, E514D, V517L; gp120: D21E, E34K, L58M, Q86E, V99I, D105N, -107N, -111N, -112T, L137I, T191A, N201K, D251N, K262Q, N267V, S272N, T277K, H280R, V288T, R291A, Y302H, E304N, T308S, K315Q, Q316N, A318S, K319R, Q334A, P336A, L341P, M345T, H347S, R351G, T360S, K361G, -367Y, I387T, L388I, G401E, Q404R, S412A, N416T, V418K, N432V, N446D, K448R, I468V, K472R; gp41: M54L, E121D, S125N, N129T, Q130L, I134L, L135I, E137K, N140D, K144R, T208I, H211L, A243S, S256C, A268T, R277L, A306T, A322V, L330I; nef: E18Q, K192R, L198Q; p1: N9-; p17: S9T, A83V, E93D, I104M, Q112K, Q113S, T115A, N125S, Q130H; p2: Q6H, N9Q, -10A, -11N, -12V; p24: Q9H, V27I, S41T, V83I, P92A, M96I, G116Q, D128E, R154K, Y169F, E180D, E187D, L190I, S200T, K203R, T207P; p6: N14D, M17K, T22N, S24L, P36H, V39S, L50W; pro: L10M, G16E; rev: G6E, I21F, S25T, Y28F, S61E, Q74L, S86D, V108A, S112A; tat: Q17R, T19I, S23N, C31S, Q35Y, N67I, I69L, K71N, P73S, I76F; vif: I31V, V55I, K63R, N93T, Q105R, K160R; vpr: Y15H; vpu: A27F, F30C, I33V, N81D", "clade": "CRF111_01C"}}, "children": [{"name": "CRF111_01C_NODE_0000001", "node_attrs": {"div": 0.1624, "clade_membership": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["T213C", "T214G", "-217A", "G662T", "T988C", "G1963A", "A2002G", "A2592G", "A3388G", "A4774G", "-6217T", "G6234A", "G6323A", "A6354G", "T6372C", "A6771G", "-6833A", "-6834A", "-6835C", "-6958T", "C6993A", "T7162A", "A7461G", "T7466C", "G7668A", "A8348G", "G8558A", "A8874G"], "RT-p51": ["K166R"], "RT-p66": ["K166R"], "gp120": ["R127K", "I153L", "D157N", "N167S", "I173T", "N306S"], "gp41": ["H53R", "R122K"], "nef": ["R178G"], "p24": ["V86A"]}, "labels": {"aa": "RT-p51: K166R; RT-p66: K166R; gp120: R127K, I153L, D157N, N167S, I173T, N306S; gp41: H53R, R122K; nef: R178G; p24: V86A"}}, "children": [{"name": "MT624751", "node_attrs": {"div": 0.19634, "accession": "MT624751", "clade_membership": {"value": "CRF111_01C"}, "country": {"value": "CN"}, "date": {"value": 2016.0}, "Strain_name": {"value": "16YN29"}, "LANL_subtype": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["A96G", "G112A", "G118T", "T119G", "C155G", "C160T", "A303T", "A388G", "T422C", "G424A", "G428A", "T536A", "T571A", "A611G", "T668C", "A670G", "A674G", "C679G", "A680C", "G687A", "C691T", "G706A", "T758A", "G762A", "C771T", "T824C", "A829G", "A932G", "C936T", "A978G", "A1002G", "C1013T", "A1025C", "C1062A", "A1157G", "A1299T", "G1313A", "C1360A", "A1361T", "G1370A", "G1394A", "G1474A", "A1495G", "G1508A", "G1586A", "C1692A", "A1718G", "A1729G", "-1743A", "-1744A", "-1745A", "A1746-", "A1747-", "T1748-", "G1760A", "A1770G", "G1773A", "A1777G", "C1796T", "G1855A", "A1857G", "T1903G", "G1912A", "C1985G", "G2075C", "A2212T", "G2224A", "G2350A", "A2422G", "A2461G", "C2485T", "A2560G", "A2662G", "T2737C", "G2902A", "A2923G", "A2962G", "G3010A", "C3013T", "A3019G", "A3043G", "G3071A", "A3082G", "A3091G", "C3128A", "A3205T", "A3217G", "G3250A", "T3252C", "T3262C", "A3280G", "G3340A", "A3403G", "A3441T", "C3449T", "C3475T", "A3562G", "C3610T", "C3628T", "C3668T", "G3685A", "C3763T", "A3775G", "C3970T", "A4027G", "C4043T", "A4107G", "A4108T", "C4123T", "A4407G", "A4427T", "G4516A", "T4674C", "G4695A", "T4715C", "A4721G", "C4889T", "T4995G", "T5072A", "A5112G", "G5131A", "C5149T", "T5162A", "C5215A", "G5225A", "G5236A", "A5240G", "A5272G", "T5432G", "C5438A", "T5439A", "T5515C", "A5533C", "A5537G", "A5575G", "T5576C", "C5581A", "C5589G", "C5612A", "A5613T", "C5614T", "A5640G", "C5658T", "T5659G", "T5660C", "T5679C", "G5699T", "A5715G", "A5775G", "G5812C", "G5845A", "A5872G", "A5893G", "G5956A", "C6007T", "A6022G", "G6029C", "A6030C", "A6044G", "G6055A", "C6067A", "G6079A", "C6142T", "A6149G", "T6155C", "A6158C", "T6160G", "A6164G", "T6170G", "G6172C", "-6174A", "-6175T", "A6176G", "A6177C", "T6178A", "G6179A", "T6180C", "T6181A", "A6199C", "T6210C", "T6219C", "C6238T", "T6242A", "A6262C", "T6264C", "G6267T", "A6272G", "A6288T", "T6299C", "A6311T", "A6330G", "T6334G", "A6335-", "G6336-", "T6337-", "A6338-", "A6339-", "C6364T", "C6370T", "C6482A", "A6488C", "A6489T", "A6581G", "A6605G", "G6644A", "A6648G", "G6653A", "T6654A", "A6655T", "A6774G", "A6776C", "T6778G", "A6780T", "A6781G", "C6797A", "A6798G", "T6808C", "A6819C", "A6823G", "A6837C", "C6838A", "A6840C", "C6858A", "G6860T", "T6876C", "C6937A", "-6955C", "-6956A", "-6957T", "-6969A", "-6970C", "-6971A", "-6972A", "-6973T", "-6974G", "-6975G", "-6976T", "-6977A", "-6978C", "-6979A", "-6980G", "-6981A", "-6982A", "-6983G", "-6984A", "-6985T", "-6989A", "-6990C", "T6991A", "-6994C", "-6995A", "-6996A", "-6997A", "C7006-", "A7095T", "A7100T", "T7105C", "A7108C", "A7113G", "A7151G", "A7152G", "A7155G", "A7160G", "C7165T", "A7246G", "G7256A", "A7339G", "G7390A", "T7400C", "G7440A", "A7504G", "C7597T", "T7604A", "G7631C", "T7656A", "A7660G", "C7689T", "T7692A", "A7765G", "A7818G", "T7843C", "G7944A", "G7962A", "G8006A", "G8008A", "A8019C", "T8094C", "C8095A", "T8101A", "C8103T", "A8104G", "T8223C", "G8354A", "A8370T", "A8404G", "C8412G", "A8417T", "A8486G", "T8509A", "C8510G", "G8534T", "C8552T", "G8561A", "A8564G", "T8567C", "A8584T", "A8617G", "A8636T", "T8640A", "A8642G", "A8653G", "G8660A", "C8669T", "G8678A", "C8684T", "T8687C", "A8701T", "C8717A", "G8732A", "A8762T", "G8794A", "G8818A", "A8824G", "A8826-", "A8827-", "C8828-", "A8837G", "T8855A", "G8856C", "G8857C", "A8859G", "T8860A", "G8864C", "C8867A", "G8868-", "A8869-", "A8870-", "G8880A", "G8894A", "C8921T", "A8933G", "T9019G", "A9027C", "T9029-", "-9033G"], "INT": ["I84M", "P90S", "K111S", "K211R", "T218S"], "RT-p51": ["K39N", "V326I", "P345T", "E370D", "I386T"], "RT-p66": ["K39N", "V326I", "P345T", "E370D", "I386T", "E449V"], "gp120": ["I56M", "E59P", "N64D", "M67I", "N71K", "I99V", "N102Q", "T104A", "A106V", "N108A", "-109T", "-113T", "E125-", "V126I", "S130T", "E136D", "I137T", "R138I", "K140E", "Y145F", "Y149H", "N159S", "N160K", "S161-", "S162-", "P210T", "K212L", "I243V", "N251D", "V264I", "E265G", "V267N", "A291T", "T292G", "D294I", "E307G", "S308Q", "K309M", "Q315R", "E322A", "N328T", "K329T", "P335Q", "A336S", "-368I", "-369N", "-370G", "-371T", "-372Y", "-379G", "-381E", "-382D", "-383N", "-384T", "N414I", "T416S", "K418N", "N420S", "T436A", "V468I"], "gp41": ["R46K", "S101T", "E110Q", "I118K", "T129I", "L130Q", "K172R", "R214K", "G220E", "V235I", "N239T", "I264T", "A267V"], "nef": ["I10L", "V56E", "Y81F", "K92R", "E98D", "L100M", "K104R", "Y120F", "H125Q", "R151K", "G159E", "N161S", "N162C", "C163-", "H171Q", "G172P", "M173E", "E174D", "D175E", "E176-", "V180M"], "p17": ["K18R", "R30K", "M31I", "F79Y", "I92M", "K109N", "K112R", "A115S", "A118T", "A119V", "S124N"], "p24": ["H9Q", "V11I", "P14S", "N33S", "I83V", "I91V", "E98D", "L111I", "I190L", "T210N"], "p6": ["P5T", "K17R", "M21I", "N22K", "K31E", "D32N", "K33R"], "p7": ["R3K", "K10R"], "pro": ["K20R", "D35E", "L63V", "I93L"], "rev": ["E6D", "T8A", "F21L", "T25S", "R53H", "A54T", "E57D", "L83I", "C85S"], "tat": ["I19R", "A21E", "Y47H", "K53Q", "H54R", "I67A", "L69I", "N71K", "G79R", "E85K"], "vif": ["M29I", "Y30H", "E37K", "S137A", "K176E", "G182D", "T188I", "H192Q"], "vpr": ["Q3R", "L20I", "G41S", "I46V"], "vpu": ["T2N", "P3S", "L18A", "R31M", "-68L", "V69-", "D80N"]}, "labels": {"aa": "INT: I84M, P90S, K111S, K211R, T218S; RT-p51: K39N, V326I, P345T, E370D, I386T; RT-p66: K39N, V326I, P345T, E370D, I386T, E449V; gp120: I56M, E59P, N64D, M67I, N71K, I99V, N102Q, T104A, A106V, N108A, -109T, -113T, E125-, V126I, S130T, E136D, I137T, R138I, K140E, Y145F, Y149H, N159S, N160K, S161-, S162-, P210T, K212L, I243V, N251D, V264I, E265G, V267N, A291T, T292G, D294I, E307G, S308Q, K309M, Q315R, E322A, N328T, K329T, P335Q, A336S, -368I, -369N, -370G, -371T, -372Y, -379G, -381E, -382D, -383N, -384T, N414I, T416S, K418N, N420S, T436A, V468I; gp41: R46K, S101T, E110Q, I118K, T129I, L130Q, K172R, R214K, G220E, V235I, N239T, I264T, A267V; nef: I10L, V56E, Y81F, K92R, E98D, L100M, K104R, Y120F, H125Q, R151K, G159E, N161S, N162C, C163-, H171Q, G172P, M173E, E174D, D175E, E176-, V180M; p17: K18R, R30K, M31I, F79Y, I92M, K109N, K112R, A115S, A118T, A119V, S124N; p24: H9Q, V11I, P14S, N33S, I83V, I91V, E98D, L111I, I190L, T210N; p6: P5T, K17R, M21I, N22K, K31E, D32N, K33R; p7: R3K, K10R; pro: K20R, D35E, L63V, I93L; rev: E6D, T8A, F21L, T25S, R53H, A54T, E57D, L83I, C85S; tat: I19R, A21E, Y47H, K53Q, H54R, I67A, L69I, N71K, G79R, E85K; vif: M29I, Y30H, E37K, S137A, K176E, G182D, T188I, H192Q; vpr: Q3R, L20I, G41S, I46V; vpu: T2N, P3S, L18A, R31M, -68L, V69-, D80N"}}}, {"name": "CRF111_01C_NODE_0000002", "node_attrs": {"div": 0.17038999999999999, "clade_membership": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["A645C", "A656G", "A661G", "A673G", "A678-", "A692G", "C964T", "A1049G", "T1091C", "A1097C", "G1452A", "T1502C", "A1562G", "A1742G", "A1857T", "A2007G", "G2519A", "G3094A", "T3175C", "G3221T", "G3483A", "G3718A", "G3796A", "C3826T", "G3891C", "C4916T", "T5228C", "T5237C", "G5299A", "C5303T", "A5602C", "A5706G", "C5707T", "G5712A", "G5739A", "C5866A", "A6173-", "A6188G", "A6196C", "A6273G", "A6275C", "T6287C", "T6289A", "A6311C", "-6340T", "G6457T", "T6460A", "A6463G", "T6487C", "T6592C", "G6935C", "A6986-", "T6988-", "-6990A", "-7004G", "-7005A", "C7008-", "A7237G", "A7542G", "A7641G", "A7651C", "G7658C", "A7705G", "G7744A", "G7773A", "G7980A", "C8062T", "C8065T", "A8086G", "C8165A", "G8329A", "-8487G", "A8493-", "A8494-", "T8495-", "T8509-", "C8699T", "C8771T", "C8810G", "A8823G", "A8827G", "C8828A", "A8846G", "T9018G"], "INT": ["S39T"], "RT-p51": ["V142I", "A376S"], "RT-p66": ["V142I", "A376S", "R463K"], "gp120": ["D4E", "-113N", "K140R", "K141Q", "Y145Q", "K201N", "D202E", "S308N", "G361L", "T385-", "V432T"], "gp41": ["Q80R", "D113G", "E119Q", "S157N", "G226D", "L288I"], "nef": ["R21K", "N49D", "D156E", "N161D", "N162R", "I168M"], "p17": ["M104L", "K109S"], "p2": ["A10T"], "p24": ["A78V"], "pro": ["K20I", "K70R"], "rev": ["P72S", "L73F", "R80G", "S106Y"], "vpr": ["Y45H"]}, "labels": {"aa": "INT: S39T; RT-p51: V142I, A376S; RT-p66: V142I, A376S, R463K; gp120: D4E, -113N, K140R, K141Q, Y145Q, K201N, D202E, S308N, G361L, T385-, V432T; gp41: Q80R, D113G, E119Q, S157N, G226D, L288I; nef: R21K, N49D, D156E, N161D, N162R, I168M; p17: M104L, K109S; p2: A10T; p24: A78V; pro: K20I, K70R; rev: P72S, L73F, R80G, S106Y; vpr: Y45H"}}, "children": [{"name": "MT624754", "node_attrs": {"div": 0.19077, "accession": "MT624754", "clade_membership": {"value": "CRF111_01C"}, "country": {"value": "CN"}, "date": {"value": 2016.0}, "Strain_name": {"value": "16YN652"}, "LANL_subtype": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["G118A", "T288C", "T467C", "C482G", "A513C", "G579A", "T583C", "-678G", "C707T", "G821A", "A944C", "A980G", "G996A", "G1031A", "G1139A", "G1140A", "A1193G", "G1205A", "T1229C", "C1295T", "G1339A", "C1350A", "G1354A", "G1394A", "T1409C", "A1412G", "G1417A", "G1487A", "C1556T", "G1584A", "G1586A", "G1589A", "T1682C", "G1725A", "G1731A", "A1776G", "T1830C", "A1894G", "A1915G", "A1927G", "A1990G", "G2000A", "G2075A", "G2154A", "G2246A", "C2326T", "G2329A", "G2428A", "C2596T", "G2663A", "G2681A", "A2746G", "G2786A", "G2878A", "G2921A", "G2947A", "G3016A", "G3041A", "A3073G", "A3195C", "G3448A", "A3476C", "A3547G", "T3844C", "T3856C", "G3866A", "A4093G", "C4132T", "T4153C", "G4178A", "A4189G", "C4198T", "A4419C", "A4492C", "G4597A", "T4612G", "A4673G", "A4878G", "T5072C", "A5079T", "A5187T", "T5206C", "C5248A", "T5292C", "A5422-", "C5429T", "T5430-", "A5431-", "T5432A", "A5433T", "T5515C", "A5563G", "G5652A", "C5653A", "G5694A", "G5696A", "G5699A", "G5729A", "A5746G", "G5902A", "A5926G", "A6030G", "G6121A", "-6175G", "T6178C", "T6180A", "C6195T", "C6198T", "A6201C", "T6202C", "C6205T", "A6206G", "T6210C", "T6219C", "G6230A", "A6251G", "A6254G", "C6255A", "A6270G", "A6288G", "A6289G", "G6290A", "A6303C", "T6328G", "A6330G", "A6332G", "G6336C", "A6339G", "A6489G", "A6525T", "G6550A", "G6601A", "A6628T", "A6648C", "C6758T", "A6776G", "T6778G", "T6787G", "A6799T", "G6818C", "A6820G", "T6849G", "C6855A", "A6926G", "C6938T", "A6947G", "A6954T", "-6955G", "-6956T", "-6957T", "-6969A", "-6970C", "-6971A", "-6972A", "-6973T", "-6974A", "-6975G", "-6976T", "-6977A", "-6978C", "-6979A", "-6980G", "-6981G", "-6982T", "-6983A", "-6984C", "-6985A", "-6986C", "-6988C", "-6989A", 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"-373S", "-374T", "-375G", "-376T", "-377H", "-379K", "-381E", "-382N", "T416Q", "K418N", "N420S", "N435T", "T436E", "N437S"], "gp41": ["I135L", "N160T", "K172R", "S210T", "R214G", "D232N", "C256S", "G286W", "L290I", "L304F", "V311I"], "nef": ["T23A", "M48I", "V56A", "E64D", "Y81F", "H116N", "I133T", "Y135F", "Q198L"], "p17": ["I60L", "V82I", "V83A"], "p24": ["E71D", "I83M", "G89R", "G137R", "R203K", "P207T", "G208E", "R229K"], "p6": ["G16R", "G18R", "K33E", "S51P"], "p7": ["G40R"], "pro": ["V11A", "I64M", "G68R"], "rev": ["F28Y", "E32G", "R50K", "A54T", "I55L", "R58W", "L74Q", "G104V", "A108D"], "tat": ["S16-", "I19-", "Y47H", "K63E"], "vif": ["R4K", "I9S", "I98V", "S165C"], "vpr": ["N28I", "D48E", "I63T"], "vpu": ["L16I", "C30Y", "R31K", "R41K", "R47G"]}, "labels": {"aa": "INT: V31I, V135I, K215T, D279E; RT-p51: R20K, G51R, G190R, G196R, G231R, V276I, G316R, Q367P; RT-p66: R20K, G51R, G190R, G196R, G231R, V276I, G316R, Q367P; gp120: E59G, N107-, -109D, T112A, -114I, -115S, V126I, M133V, T134D, D139G, Q145R, A146T, K150T, N158K, N159S, N160D, S161T, K212R, K224M, E265A, H302Y, N308E, N311K, Q315H, E322Q, I332R, A334E, P341L, T359G, S360T, L361F, S365G, -368N, -373S, -374T, -375G, -376T, -377H, -379K, -381E, -382N, T416Q, K418N, N420S, N435T, T436E, N437S; gp41: I135L, N160T, K172R, S210T, R214G, D232N, C256S, G286W, L290I, L304F, V311I; nef: T23A, M48I, V56A, E64D, Y81F, H116N, I133T, Y135F, Q198L; p17: I60L, V82I, V83A; p24: E71D, I83M, G89R, G137R, R203K, P207T, G208E, R229K; p6: G16R, G18R, K33E, S51P; p7: G40R; pro: V11A, I64M, G68R; rev: F28Y, E32G, R50K, A54T, I55L, R58W, L74Q, G104V, A108D; tat: S16-, I19-, Y47H, K63E; vif: R4K, I9S, I98V, S165C; vpr: N28I, D48E, I63T; vpu: L16I, C30Y, R31K, R41K, R47G"}}}, {"name": "MT624755", "node_attrs": {"div": 0.18392999999999998, "accession": "MT624755", "clade_membership": {"value": "CRF111_01C"}, "country": {"value": "CN"}, "date": {"value": 2016.0}, "Strain_name": {"value": "16YN732"}, "LANL_subtype": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["A265C", "T396C", "A417C", "A543G", "A674C", "A675-", "A676-", "G677-", "C679-", "A680-", "A776T", "A1002T", "A1134G", "G1298A", "G1313A", "A1346G", "G1354C", "T1358C", "A1463G", "G1474A", "G1661A", "A1754G", "A1900G", "T2146C", "A2612G", "T2613A", "A2618C", "C2749T", "G2932A", "A2937G", "C3180G", "A3214G", "G3398A", "C3449A", "A3454G", "C3688T", "G3952A", "C4234T", "C4288T", "A4787G", "G4978A", "A5059C", "G5065A", "C5239T", "A5240G", "C5438A", "G5565A", "A5575T", "T5686C", "A5737G", "A6001C", "A6019G", "A6024G", "G6085T", "G6088A", "G6092A", "A6112G", "A6158C", "T6160G", "T6170G", "T6171C", "G6172T", "A6177G", "T6181G", "A6192G", "A6194T", "A6203T", "A6204C", "T6213G", "C6222A", "A6323C", "A6324C", "T6325A", "A6333G", "G6425A", "T6446A", "A6573G", "A6583G", "G6626A", "A6639G", "A6649T", "A6668G", "A6669G", "A6715G", "G6773A", "A6774G", "A6800G", "T6876C", "G6936T", "C6951T", "T6953G", "A6954G", "G6962A", "A6987-", "T6991C", 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-109A, T110S, N111S, -114S, -115T, -116I, -117G, -118N, -119I, -123K, -124D, N157P, N160S, S162N, A191T, L198I, E240G, I243M, V258I, Q262R, E265D, N272G, E307R, N316D, T366I, Y367G, -369N, -370S, -371T, -372Y, -373N, -374G, -375T, -376G, -377D, N378-, T380-, T432N, N433D, N437T, R472K; gp41: E109D, N166H, F206L, N239E, T307V, I309V, R324T, I329L, L344W; nef: H40Y, M48R, D49A, N52-, A53-, D54-, S55-, V56-, W57-, L58-, R59-, A60-, K104E, Q107K, E176K; p17: K28Q, T70A, K114-, A115-; p2: I13M; p24: L15F, I91F, I135V, G208A; p7: R3K; pro: I93V; rev: R17K, K20N, E57R, R58G, D86N, V97M; tat: A21D, I67F; vif: M29I, R131H, K158T, R160K; vpr: I46V; vpu: F27L, K44E"}}}]}]}, {"name": "CRF111_01C_NODE_0000003", "node_attrs": {"div": 0.16457, "clade_membership": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "A215-", "A216-", "T1229C", "A1448G", "C1979G", "A2273G", "G3891A", "A5462G", "A5563G", "-6174C", "-6175C", "T6181C", "C6184T", "C6205A", "G6230-", "A6947G", "-6955C", "A7148G", "A7149T", "T7919C", "T8337A", "A8739G", "A8935G", "A9065-"], "INT": ["S39N"], "RT-p51": ["I60V"], "RT-p66": ["I60V"], "gp120": ["-109I", "N327-", "S365G"], "gp41": ["F206L", "T307I", "L345Q"], "nef": ["M48L", "Q198R"], "p17": ["A115Q"], "pro": ["Q61E"], "tat": ["K63E"], "vpr": ["G94S"]}, "labels": {"aa": "INT: S39N; RT-p51: I60V; RT-p66: I60V; gp120: -109I, N327-, S365G; gp41: F206L, T307I, L345Q; nef: M48L, Q198R; p17: A115Q; pro: Q61E; tat: K63E; vpr: G94S"}}, "children": [{"name": "CRF111_01C_NODE_0000004", "node_attrs": {"div": 0.16859, "clade_membership": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "C1007T", "G1090A", "A1093C", "A2007G", "A3214G", "C3843T", "T4412C", "G5170A", "G5385A", "A5532C", "G5535A", "C6183A", "C6198A", "A6203G", "A6204G", "G6212A", "T6219-", "A6220-", "A6281C", "A6573G", "A6734G", "T6735A", "G6773A", "A6779G", "C6857T", "-6971A", "-6973T", "G7055C", "A7158C", "T7159G", "C7161G", "A7688G", "A7761G", "A7796T", "G7873A", "T7935A", "A7964G", "G7997A", "C8080A", "G8159T", "G9006C"], "INT": ["A23V"], "gp120": ["K143Q", "E240G", "D294E", "E307K", "K309E", "P335S", "P341L", "-369N", "-370G", "-371T", "-372Y", "E401Q", "T436S"], "gp41": ["T129A", "D153G", "T165S", "L211H", "R221G", "D232N", "G286W"], "nef": ["I133V"], "p17": ["K18R"], "p24": ["S120N", "N121T"], "pro": ["K70R"], "rev": ["E6A", "S7N", "K39R", "R50K", "L78I", "G104V"], "tat": ["K29R", "F76I"], "vif": ["M29I"]}, "labels": {"aa": "INT: A23V; gp120: K143Q, E240G, D294E, E307K, K309E, P335S, P341L, -369N, -370G, -371T, -372Y, E401Q, T436S; gp41: T129A, D153G, T165S, L211H, R221G, D232N, G286W; nef: I133V; p17: K18R; p24: S120N, N121T; pro: K70R; rev: E6A, S7N, K39R, R50K, L78I, G104V; tat: K29R, F76I; vif: M29I"}}, "children": [{"name": "MZ327297", "node_attrs": {"div": 0.19036999999999998, "accession": "MZ327297", "clade_membership": {"value": "CRF111_01C"}, "country": {"value": "CN"}, "date": {"value": 2016.0}, "Strain_name": {"value": "YN16H12"}, "LANL_subtype": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["-167G", "A171G", "C173T", "T174A", "T201C", "A265C", "A421T", "A423G", "A431C", "T467C", "A509G", "T571A", "A619G", "T655C", "A669G", "A675G", "A932G", "A1025T", "A1412G", "G1452A", "A1463G", "A1562G", "G1586A", "A1643G", "A1718G", "A1742G", "T1749C", "A1777G", "G1781T", "A1783G", "A1786C", "T1790C", "C1825A", "A1857G", "A2117G", "A2422G", "G2519A", "T2770C", "G2830A", "G2921A", "C2942A", "G3080A", "C3128A", "A3145G", "G3221A", "T3225A", "G3250A", "G3340A", "A3622G", "G3685A", "A3808C", "A3810T", "A3822G", "T3847G", "A3854T", "G3859A", "A3862C", "G3887C", "G3903T", "G3937A", "C4076G", "A4114C", "A4189G", "A4558T", "G4642A", "G4689A", "C4728A", "A4749G", "G4765A", "A4774T", "T4858G", "C4916T", "A5038G", "A5046G", "A5112G", "T5162A", "T5197A", "G5212A", "C5227T", "A5240G", "C5248A", "A5285G", "A5305G", "C5306T", "C5438A", "T5439C", "C5445T", "T5451C", "A5548G", "C5612A", "A5613T", "A5644G", "T5679A", "A5706G", "C5707T", "C5866A", "G5917A", "A5959T", "A5999G", "C6004T", "A6149G", "T6155C", "A6164G", "A6183G", "A6185C", "A6191C", "A6192C", "C6195A", "A6199T", "A6201T", "T6202A", "C6207A", "A6208T", "T6213C", "A6215-", "A6216-", "A6218-", "A6221-", "C6222-", "A6223-", "-6230A", "G6284A", "T6285C", "A6338G", "-6340G", "A6362G", "C6370T", "G6391A", "C6441T", "A6462T", "C6482T", "A6489C", "C6499T", "G6532A", "C6563T", "A6583G", "G6647C", "A6771G", "A6776C", "A6781C", "A6799T", "T6802G", "T6808C", "G6818A", "A6848G", "C6862A", "C6937T", "A6952T", "C6966A", "A6967T", "T6968G", "-6969G", "-6970T", "-6972C", "-6983T", "-6984A", "-6985C", "-6989G", "-6990G", "-6994A", "-6995A", "-6996A", "-6997A", "-6998G", "-6999G", "-7000T", "-7001A", "-7002A", "-7003T", "-7004T", "-7005C", "C7006A", "A7107C", "A7157G", "C7165T", "G7198A", "A7348T", "A7626T", "G7628A", "A7630T", "T7636C", "A7657G", "A7660C", "T7675C", "T7692A", "G7702T", "A7818G", "T7825C", "A7862G", "G7868A", "C7874A", "G7977A", "G8008T", "A8014T", "A8019C", "T8032C", "C8033A", "C8062T", "C8065T", "T8113A", "A8130G", "A8184G", "C8286T", "A8299C", "C8320T", "G8329A", "C8342T", "G8375A", "G8381C", "A8386G", "A8403G", "A8421G", "A8459G", "G8479A", "A8484C", "T8495C", "G8499A", "G8516A", "G8534T", "T8651C", "G8678A", "C8717A", "T8775C", "C8789T", "A8793G", "G8794T", "C8810G", "G8818C", "A8827G", "C8828A", "T8835A", "A8837G", "G8864C", "A8874G"], "INT": ["E11D", "H12L", "H16R", "S24R", "N27Y", "A38P", "C43F", "L101V"], "RT-p51": ["I8V", "V142I", "V276I", "L283I", "V329I", "P345T", "A376T", "L377Q"], "RT-p66": ["I8V", "V142I", "V276I", "L283I", "V329I", "P345T", "A376T", "L377Q"], "gp120": ["D4E", "T49A", "I99V", "T104A", "A106L", "N107T", "I109V", "T110S", "N111S", "-113N", "-114H", "-115T", "-116P", "-117K", "-118N", "-119I", "-120G", "-121N", "-122I", "-123T", "-124D", "V126I", "V144T", "S162E", "T170A", "A196V", "K203I", "P210S", "K212T", "I243M", "E265Q", "N306S", "S308H", "E309D", "Q315H", "N316K", "E322K", "I332V", "-368N", "-379G", "-381K", "-382G", "-383N", "-384S", "K418T", "N435A"], "gp41": ["Y108F", "E109N", "I118M", "E119D", "L130Q", "E133D", "K172R", "I187V", "A189T", "L191I", "G225E", "L237F", "N239T", "L244I", "L277S", "Q294R", "A328V"], "nef": ["W13C", "Q15R", "R21E", "T27A", "S46N", "-50N", "-51T", "N52D", "A53S", "D54V", "S55-", "V56-", "E64D", "H125Q", "R151V", "D156E", "G159A", "N162R", "L165M", "E174D", "R178G"], "p17": ["Y29F", "R30G", "K32N", "F79Y", "K95R", "V107A", "K112E", "S113N", "K114Q"], "p2": ["A10T", "I13M"], "p24": ["E98D"], "p6": ["S23P", "K33R", "E34D", "H35R", "H36P", "P38S", "S39V", "P49Q"], "pro": ["K20R", "I93V"], "rev": ["A54S", "S56C", "E57D", "S62H", "P72S", "L73F", "D86N", "C89S"], "tat": ["A21D", "T58A"], "vif": ["R19K", "A35T", "H48N", "I55V", "G60E", "R63I", "L91W", "K151R", "I154V", "K176E", "H192Q"], "vpr": ["Q3R", "L20I", "I46V", "D48E", "I61V"], "vpu": ["T2N", "I13V"]}, "labels": {"aa": "INT: E11D, H12L, H16R, S24R, N27Y, A38P, C43F, L101V; RT-p51: I8V, V142I, V276I, L283I, V329I, P345T, A376T, L377Q; RT-p66: I8V, V142I, V276I, L283I, V329I, P345T, A376T, L377Q; gp120: D4E, T49A, I99V, T104A, A106L, N107T, I109V, T110S, N111S, -113N, -114H, -115T, -116P, -117K, -118N, -119I, -120G, -121N, -122I, -123T, -124D, V126I, V144T, S162E, T170A, A196V, K203I, P210S, K212T, I243M, E265Q, N306S, S308H, E309D, Q315H, N316K, E322K, I332V, -368N, -379G, -381K, -382G, -383N, -384S, K418T, N435A; gp41: Y108F, E109N, I118M, E119D, L130Q, E133D, K172R, I187V, A189T, L191I, G225E, L237F, N239T, L244I, L277S, Q294R, A328V; nef: W13C, Q15R, R21E, T27A, S46N, -50N, -51T, N52D, A53S, D54V, S55-, V56-, E64D, H125Q, R151V, D156E, G159A, N162R, L165M, E174D, R178G; p17: Y29F, R30G, K32N, F79Y, K95R, V107A, K112E, S113N, K114Q; p2: A10T, I13M; p24: E98D; p6: S23P, K33R, E34D, H35R, H36P, P38S, S39V, P49Q; pro: K20R, I93V; rev: A54S, S56C, E57D, S62H, P72S, L73F, D86N, C89S; tat: A21D, T58A; vif: R19K, A35T, H48N, I55V, G60E, R63I, L91W, K151R, I154V, K176E, H192Q; vpr: Q3R, L20I, I46V, D48E, I61V; vpu: T2N, I13V"}}}, {"name": "MT624752", "node_attrs": {"div": 0.18721, "accession": "MT624752", "clade_membership": {"value": "CRF111_01C"}, "country": {"value": "CN"}, "date": {"value": 2016.0}, "Strain_name": {"value": "16YN604"}, "LANL_subtype": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["C155G", "G162A", "-179C", "-180A", "-181G", "-182T", "-183G", "-184G", "-185C", "-186G", "-187C", "-188C", "-189C", "-190G", "-191A", "-192A", "-193C", "-194A", "-195G", "T200C", "T213C", "T214G", "-215A", "-216A", "-217A", "G407A", "A412G", "G413A", "A513C", "T525C", "G542T", "A557G", "G579A", "A661G", "A673G", "A678G", "C679T", "T788C", "A1097C", "T1181C", "G1298A", "G1354C", "A1475-", "G1476-", "G1477-", "T1481G", "C1511T", "A1525G", "G1589A", "A1642G", "T1682C", "A1729G", "A1746G", "T1749G", "G1855C", "G2075A", "G2123A", "G2179A", "G2224A", "T2672C", "G2681A", "G2682A", "A2692G", "A2698G", "G2764A", "A2794G", "G2821A", "T2845C", "A3073G", "A3097G", "A3142C", "T3175C", "C3222T", "T3252C", "G3264A", "C3271T", "A3388G", "T3412C", "G3508A", "A3514G", "G3667T", "G3718A", "C3773T", "C3946T", "A3985G", "C4009T", "T4039C", "A4182G", "A4402G", "C4665T", "G4779A", "A4814C", "T4857A", "A5148G", "G5179A", "A5247C", "C5250A", "A5324G", "A5345G", "G5403A", "A5431T", "A5444C", "T5515C", "C5589G", "A5689G", "G5700A", "T5731A", "A6016G", "T6046C", "C6148T", "A6158C", "T6160G", "C6166T", "A6185G", "A6186T", "T6187C", "A6191T", "T6193C", "A6194T", "A6200G", "T6202C", "A6205T", "A6206T", "T6210A", "A6211T", "A6216C", "-6217A", "A6218G", "-6219A", "-6220T", "A6221G", "C6222A", "A6225-", "T6226-", "G6227-", "A6228-", "A6229-", "G6234A", "T6242A", "A6273G", "G6277A", "C6278A", "C6286T", "A6288C", "T6325G", "A6326G", "T6328G", "A6329G", "A6333T", "-6340C", "G6376A", "A6450T", "C6483T", "C6638A", "C6660T", "A6777G", "A6786G", "T6787G", "C6792T", "G6810A", "A6819G", "A6822G", "-6969A", "-6970C", "-6972A", "-6974G", "-6975A", "-6976T", "-6977A", "-6978C", "-6979A", "-6980G", "-6981G", "-6982A", "-6983A", "-6984G", "-6985T", "-6989T", "-6990C", "T6991A", "A7016C", "C7064A", "T7153G", "A7157T", "G7333A", "A7527T", "G7633A", "A7712C", "G7744A", "G7750A", "G7790A", "A7807G", "A7816T", "T7926C", "C7932T", "G7980A", "G8001A", "A8105G", "G8264A", "G8349A", "G8350A", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "G8376-", "G8377-", "A8378-", "T8384G", "G8405A", "C8412G", "T8414A", "T8456C", "C8460T", "T8485C", "A8531G", "T8585C", "G8588A", "A8617G", "T8687C", "A8701T", "C8747T", "A8846G", "G8935T", "A8936G", "T9018G", "-9065A"], "INT": ["K136R"], "RT-p51": ["V10I", "G196K", "A376V", "I386T", "R390K"], "RT-p66": ["V10I", "G196K", "A376V", "I386T", "R390K", "E524D"], "gp120": ["N102Q", "N111D", "T112-", "R127K", "S130T", "K140R", "Q142K", "Y145S", "D157E", "N158E", "N159G", "S161I", "K199M", "P210L", "Q262K", "T269I", "N311R", "T313I", "R319K", "E322G", "E323G", "-373N", "-374D", "-375T", "-376G", "-377S", "-379S", "I388L", "N433K", "N435S"], "gp41": ["Y75F", "K137Q", "D163N", "I208T", "S210F", "G226D", "R233K", "T268A", "V321I"], "nef": ["G3N", "S9-", "I10-", "V11-", "G12-", "R21K", "P24S", "T27P", "E28A", "G29T", "H40Y", "L48T", "K92R", "Y120F", "I168M", "R198L"], "p1": ["K4R"], "p17": ["K26R", "I60L", "K69N", "V82I", "K109R", "Q115V"], "p24": ["G208A"], "p6": ["K17R", "M21I", "N22D", "S23A"], "p7": ["R3S", "G4K", "N5F", "F6K", "K7G", "G8Q", "Q9K", "K10R", "R11I", "I12-", "K20R"], "rev": ["T25S", "D86S"], "tat": ["I19L", "N23T", "Y47H", "N71K", "S73P", "P75S"], "vif": ["H27Y", "R63K", "V65I", "E76D", "L91M", "T188A"], "vpr": ["H15R", "D48A", "T49N"], "vpu": ["I28V", "L42I"]}, "labels": {"aa": "INT: K136R; RT-p51: V10I, G196K, A376V, I386T, R390K; RT-p66: V10I, G196K, A376V, I386T, R390K, E524D; gp120: N102Q, N111D, T112-, R127K, S130T, K140R, Q142K, Y145S, D157E, N158E, N159G, S161I, K199M, P210L, Q262K, T269I, N311R, T313I, R319K, E322G, E323G, -373N, -374D, -375T, -376G, -377S, -379S, I388L, N433K, N435S; gp41: Y75F, K137Q, D163N, I208T, S210F, G226D, R233K, T268A, V321I; nef: G3N, S9-, I10-, V11-, G12-, R21K, P24S, T27P, E28A, G29T, H40Y, L48T, K92R, Y120F, I168M, R198L; p1: K4R; p17: K26R, I60L, K69N, V82I, K109R, Q115V; p24: G208A; p6: K17R, M21I, N22D, S23A; p7: R3S, G4K, N5F, F6K, K7G, G8Q, Q9K, K10R, R11I, I12-, K20R; rev: T25S, D86S; tat: I19L, N23T, Y47H, N71K, S73P, P75S; vif: H27Y, R63K, V65I, E76D, L91M, T188A; vpr: H15R, D48A, T49N; vpu: I28V, L42I"}}}]}, {"name": "CRF111_01C_NODE_0000005", "node_attrs": {"div": 0.17463, "clade_membership": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["-167G", "A171G", "C173T", "T174A", "T201C", "A265C", "T571A", "C590T", "A619G", "T655C", "A675G", "A878T", "T979C", "C1040T", "A1050T", "T1052A", "T1459C", "G1589A", "A1642G", "T1741C", "A1771G", "G1781A", "A1786G", "C2353T", "T2708C", "A2846G", "G2847A", "A3145G", "G3221T", "T3230A", "G3250A", "G3264A", "C3271T", "C3292T", "T3530C", "G3538A", "G3796A", "G3937A", "C4009T", "A4225G", "A4673G", "T4907C", "A5045G", "A5049G", "A5148G", "T5197C", "G5382T", "C5454T", "A5664C", "T5688C", "A5718G", "T5731C", "A5748T", "G5848A", "T5851G", "A6030C", "T6115C", "T6187C", "C6207A", "A6254G", "G6277A", "C6278A", "G6292A", "T6295C", "A6338G", "-6340A", "G6368A", "T6523C", "C6758T", "A6777G", "T6802C", "G6860C", "T6876C", "-7004G", "-7005A", "A7258G", "C7264A", "G7589T", "G7790A", "A7791G", "A7862G", "G8008C", "A8019G", "A8104G", "G8267A", "C8311A", "G8317A", "G8349A", "C8394G", "A8404G", "A8484C", "A8536G", "G8588A", "C8699A", "C8741T", "T8775C", "A8873C", "G8945C"], "RT-p51": ["S251D", "A376S", "C379S", "R390K"], "RT-p66": ["S251D", "A376S", "C379S", "R390K"], "gp120": ["E59A", "T134A", "Q142K", "S162E", "V172I", "H302Y", "A336S", "-383S", "-384D"], "gp41": ["A96S", "D163S", "I187V", "N239S", "V322I"], "nef": ["G3S", "Q18E", "E64D", "E201D"], "p1": ["K4R"], "p17": ["K95R", "V107A", "S113N", "K114Q"], "p24": ["I83T", "T107S"], "p6": ["K31R", "H36R"], "tat": ["E2D"], "vif": ["T155A", "T188A"], "vpr": ["H15R", "A93S"], "vpu": ["R47S", "D81N", "L82V"]}, "labels": {"aa": "RT-p51: S251D, A376S, C379S, R390K; RT-p66: S251D, A376S, C379S, R390K; gp120: E59A, T134A, Q142K, S162E, V172I, H302Y, A336S, -383S, -384D; gp41: A96S, D163S, I187V, N239S, V322I; nef: G3S, Q18E, E64D, E201D; p1: K4R; p17: K95R, V107A, S113N, K114Q; p24: I83T, T107S; p6: K31R, H36R; tat: E2D; vif: T155A, T188A; vpr: H15R, A93S; vpu: R47S, D81N, L82V"}}, "children": [{"name": "MZ327300", "node_attrs": {"div": 0.19635, "accession": "MZ327300", "clade_membership": {"value": "CRF111_01C"}, "country": {"value": "CN"}, "date": {"value": 2019.0}, "Strain_name": {"value": "YN19C41"}, "LANL_subtype": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["A398C", "A458G", "T583C", "C587T", "T614G", "A708G", "C725T", "C830T", "G935A", "A945G", "C946T", "A1002G", "C1060A", "T1061C", "G1107A", "T1223C", "A1299T", "T1362G", "C1385T", "T1442G", "A1456C", "A1461G", "A1464C", "G1487A", "G1489A", "A1492C", "A1526G", "A1544G", "A1614C", "G1621A", "C1654T", "G1725A", "G1734-", "A1735-", "A1736-", "A1740G", "C1741A", "-1743A", "-1744T", "-1745G", "A1754G", "A1777G", "A1783C", "C1825A", "G1828C", "A1839T", "T1854A", "G1855A", "T1978G", "A2002G", "G2075C", "A2117G", "G2179A", "G2273A", "A2311G", "T2440C", "G2473A", "A2510G", "A2592G", "A2626T", "G2722A", "A2794G", "C2960T", "A3019G", "A3058C", "C3128A", "T3133C", "T3175C", "G3208A", "A3214G", "A3241C", "G3316A", "G3553A", "T3644A", "A3670G", "T3712C", "G3787A", "G4060A", "G4078A", "C4198T", "C4234T", "T4435C", "A4753G", "C4754A", "T4826G", "G4855A", "T4991C", "A4994G", "T5072C", "G5137A", "G5236A", "T5252C", "C5359G", "G5370A", "C5372A", "G5375A", "A5396G", "A5431G", "T5432C", "G5462A", "G5493A", "A5537G", "A5575G", "C5585G", "G5620C", "A5661G", "C5707A", "T5708G", "G5845A", "C5866G", "G5917A", "C6023G", "A6060G", "C6067A", "G6092A", "T6155C", "A6159G", "T6160A", "C6166T", "C6174A", "A6176C", "C6183G", "A6186T", "T6193C", "A6194T", "A6196C", "A6201T", "T6202A", "A6208T", "T6213G", "-6217T", "G6224A", "-6230G", "G6274A", "A6281G", "C6286T", "T6297A", "A6333G", "G6336C", "T6337A", "G6425A", "G6442A", "C6496T", "A6505G", "A6734G", "T6735A", "G6773A", "A6774G", "A6776G", "T6778A", "A6781T", "A6785G", "T6787A", "C6802A", "G6818A", "A6848C", "T6849A", "C6857T", "C6860T", "-6956A", "-6957A", "-6958T", "A6959G", "G6962-", "G6963-", "T6964-", "A6965-", "C6966-", "A6967-", "T6968-", "-6974A", "-6975C", "-6976A", "-6977G", "-6978C", "-6979A", "-6980A", "-6981G", "-6982C", "-6983T", "-6984C", "-6985A", "T6991-", "A6992-", "C6993-", "G7148A", "T7149A", "A7152G", "T7156C", "C7161A", "A7163T", "A7164C", "C7170T", "G7276A", "C7463A", "T7466C", "C7597T", "A7607T", "A7641G", "C7642A", "A7655G", "T7656C", "A7660C", "G7668A", "A7800G", "A7885G", "T7926C", "T7936C", "A7943G", "A7964G", "A7992G", "C8008T", "G8141A", "A8421G", "G8516A", "A8584T", "T8640C", "A8652G", "C8661A", "T8687C", "G8739A", "A8746T", "C8768T", "A8812C", "G8848A", "G8875A", "A8933G", "C8945T", "A9082G"], "RT-p51": ["I8V", "V60I", "T139A", "K166R", "E177D", "P345T"], "RT-p66": ["I8V", "V60I", "T139A", "K166R", "E177D", "P345T", "L517I"], "gp120": ["D4E", "H57D", "K69R", "N71K", "V80I", "N102R", "T112-", "K143E", "F148Y", "N160S", "S161T", "A191T", "D294E", "E307R", "S308G", "K309N", "N311E", "N316K", "E322K", "I332Q", "P335S", "-379D", "-381A", "-382S", "V432N", "N433S", "T436N", "N437S", "T439I"], "gp41": ["L54M", "T102S", "D113G", "I118A", "E119D", "R122K", "N166S", "I208T", "R214G", "R221G", "D230G", "E280K"], "nef": ["T27A", "Y81F", "K104E", "Q107K", "Y135F", "N157T", "S169N", "E177D", "R178K"], "p1": ["S8F"], "p17": ["L21F", "F79Y", "V83A", "D93E", "S125G"], "p2": ["H6Q", "N11T", "V12A", "I13V", "M14L"], "p24": ["M68I", "T72V", "I91V", "T110N", "V126I", "I190L", "L211V"], "p6": ["G16R", "K33R", "H35P", "P49Q", "W50S"], "p7": ["G8D", "Q9P", "T50P", "R52K"], "pro": ["M10I", "K14I", "L19Q", "D60E", "I93L"], "rev": ["T8A", "Q24E", "S30P", "E32G", "K39R", "A54S", "G98E"], "tat": ["N7S", "I19A", "H54R", "I67V", "P70R", "S73P", "F76S"], "vif": ["H56R", "R63K", "H80Q", "R90K", "R184K"], "vpr": ["Y50H", "P85R", "G89R", "S94G"], "vpu": ["E5Q", "L34R", "D80N"]}, "labels": {"aa": "RT-p51: I8V, V60I, T139A, K166R, E177D, P345T; RT-p66: I8V, V60I, T139A, K166R, E177D, P345T, L517I; gp120: D4E, H57D, K69R, N71K, V80I, N102R, T112-, K143E, F148Y, N160S, S161T, A191T, D294E, E307R, S308G, K309N, N311E, N316K, E322K, I332Q, P335S, -379D, -381A, -382S, V432N, N433S, T436N, N437S, T439I; gp41: L54M, T102S, D113G, I118A, E119D, R122K, N166S, I208T, R214G, R221G, D230G, E280K; nef: T27A, Y81F, K104E, Q107K, Y135F, N157T, S169N, E177D, R178K; p1: S8F; p17: L21F, F79Y, V83A, D93E, S125G; p2: H6Q, N11T, V12A, I13V, M14L; p24: M68I, T72V, I91V, T110N, V126I, I190L, L211V; p6: G16R, K33R, H35P, P49Q, W50S; p7: G8D, Q9P, T50P, R52K; pro: M10I, K14I, L19Q, D60E, I93L; rev: T8A, Q24E, S30P, E32G, K39R, A54S, G98E; tat: N7S, I19A, H54R, I67V, P70R, S73P, F76S; vif: H56R, R63K, H80Q, R90K, R184K; vpr: Y50H, P85R, G89R, S94G; vpu: E5Q, L34R, D80N"}}}, {"name": "MZ327298", "node_attrs": {"div": 0.19187, "accession": "MZ327298", "clade_membership": {"value": "CRF111_01C"}, "country": {"value": "CN"}, "date": {"value": 2016.0}, "Strain_name": {"value": "YN16H18"}, "LANL_subtype": {"value": "CRF111_01C"}}, "branch_attrs": {"mutations": {"nuc": ["A421T", "A423T", "A431C", "A543G", "T570C", "T788C", "A818G", "C1007T", "G1090A", "A1160G", "T1271G", "C1360A", "A1361T", "C1444T", "G1458A", "A1565G", "G1568A", "A1718G", "A1736G", "A1857T", "G1901A", "G1963A", "A1966G", "T2011C", "T2116G", "C2301A", "A2404C", "A2698G", "C2975A", "A3029G", "A3193G", "A3226G", "A3283G", "T3399A", "A3562G", "C3628T", "G3631A", "G3685A", "T3721A", "G3769A", "G3916A", "T4135C", "T4165C", "G4262A", "G4263A", "G4353A", "G4354C", "C4679T", "G4766A", "A4774G", "G4816A", "G4839A", "T4840C", "A4865T", "G4978A", "T4985C", "G5075A", "A5159G", "T5182G", "G5225A", "G5312A", "G5385A", "C5438A", "T5451C", "T5457C", "T5483C", "A5494C", "A5496T", "A5567C", "A5587G", "G5594A", "A5611T", "G5652A", "C5653G", "T5654C", "T5660C", "G5671A", "G5699A", "G5717A", "C5787T", "C5866T", "C5920T", "A6065G", "G6085T", "G6121A", "T6178C", "T6184A", "A6188T", "A6192C", "T6193A", "C6195T", "C6198A", "A6204T", "A6206G", "A6207G", "T6210A", "A6211T", "G6212A", "A6216C", "-6217A", "T6219A", "A6220T", "A6221G", "C6222A", "A6225-", "T6226-", "G6227-", "A6228-", "A6229-", "A6268G", "C6286A", "T6306C", "A6316T", "A6318C", "A6324G", "T6325A", "A6335G", "A6450T", "C6482A", "C6499T", "T6763C", "A6765T", "A6799C", "G6810A", "A6848G", "-6969A", "-6970C", "-6989A", "-6990A", "-6994A", "-6995G", "-6996A", "-6997A", "-6998A", "-6999G", "-7000A", "-7001T", "-7002C", "-7003A", "C7008A", "C7009A", "T7162C", "C7165T", "G7459T", "G7513T", "A7527T", "C7561A", "T7656A", "T7675C", "G7700C", "T7747A", "T7757C", "G7773A", "A7799C", "T7843C", "T7864C", "A7903T", "G7980A", "C8009A", "C8062T", "C8065T", "A8086G", "T8101A", "G8161A", "T8176C", "A8184G", "T8257G", "G8350A", "G8375A", "A8386G", "C8390T", "T8470C", "G8558A", "G8834A", "C8843T", "G8871C", "A8954G", "A8969C"], "INT": ["G163K", "G193D"], "RT-p51": ["T69N", "K103N", "P294T", "T312A", "V435E"], "RT-p66": ["T69N", "K103N", "P294T", "T312A", "V435E"], "gp120": ["N71D", "Q77H", "A106L", "N107T", "I109V", "T110R", "N111V", "-113N", "-114S", "-115T", "-116I", "-117K", "-118N", "-119I", "-120G", "-121N", "-122I", "-123T", "-124N", "L151P", "Q155P", "D157G", "S161G", "K199M", "P210T", "N304I", "Q315H", "R319K", "I332V", "S336P", "-368N", "-369G", "-370T", "-371Y", "-379N", "-381E", "-382R"], "gp41": ["Q52H", "Y75F", "I118K", "E133Q", "D148E", "S157N", "N166H", "G226D", "Q294R"], "nef": ["S3N", "Q15R", "V43A", "I133V", "E177H"], "p17": ["Y29F", "R30W", "K32N", "T70A", "F79H"], "p2": ["A7V", "V12T"], "p24": ["S120N", "D180E", "T210N"], "p6": ["M21T"], "pro": ["K20I", "D35N", "I93V"], "rev": ["I18L", "A54Q", "P72S", "L73F", "R80G", "C85S", "E105K"], "tat": ["A21D", "K29R", "L36S", "K40H", "D64A", "N71D"], "vif": ["R77K", "V85T", "R131H"], "vpr": ["T19A", "G41S", "V70I"], "vpu": ["T2S", "L16A", "L18S", "V22I", "R31K", "R37K"]}, "labels": {"aa": "INT: G163K, G193D; RT-p51: T69N, K103N, P294T, T312A, V435E; RT-p66: T69N, K103N, P294T, T312A, V435E; gp120: N71D, Q77H, A106L, N107T, I109V, T110R, N111V, -113N, -114S, -115T, -116I, -117K, -118N, -119I, -120G, -121N, -122I, -123T, -124N, L151P, Q155P, D157G, S161G, K199M, P210T, N304I, Q315H, R319K, I332V, S336P, -368N, -369G, -370T, -371Y, -379N, -381E, -382R; gp41: Q52H, Y75F, I118K, E133Q, D148E, S157N, N166H, G226D, Q294R; nef: S3N, Q15R, V43A, I133V, E177H; p17: Y29F, R30W, K32N, T70A, F79H; p2: A7V, V12T; p24: S120N, D180E, T210N; p6: M21T; pro: K20I, D35N, I93V; rev: I18L, A54Q, P72S, L73F, R80G, C85S, E105K; tat: A21D, K29R, L36S, K40H, D64A, N71D; vif: R77K, V85T, R131H; vpr: T19A, G41S, V70I; vpu: T2S, L16A, L18S, V22I, R31K, R37K"}}}]}]}]}]}]}]}]}, {"name": "results/subtype_trees/CRF01_AE.nwk", "node_attrs": {"div": 0.10586, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["-165T", "-217T", "A1253G", "T1752C", "-1783A", "A2808G", "-6202C", "-6211A", "A6212G", "-6216A", "-6217T", "-6222C", "C7006-", "A7007-", "C7008-", "G7534A", "G8130A"], "RT-p51": ["K238R"], "RT-p66": ["K238R"], "gp120": ["-106A", "N414K"], "vif": ["I31V"]}, "labels": {"aa": "RT-p51: K238R; RT-p66: K238R; gp120: -106A, N414K; vif: I31V", "clade": "CRF01_AE"}}, "children": [{"name": "CRF01_AE_NODE_0000001", "node_attrs": {"div": 0.1094, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "G361C", "G425A", "G428A", "G458A", "G1022A", "C1385T", "A1400G", "A1448G", "G1673A", "A1839G", "T2779G", "G2828A", "A2830T", "A2986G", "G3435A", "G3644A", "C4198T", "T4701G", "G4708A", "G4769T", "C5006T", "T5125C", "C5482T", "T5696A", "G5739A", "A5784G", "G5824A", "G5907A", "G5915A", "C6026A", "-6170G", "T6180A", "A6185G", "A6197T", "-6201C", "-6207G", "A6209C", "-6220G", "A6425G", "T6446C", "A6638G", "C6684A", "A6737G", "-6996A", "T7014C", "T7150G", "C7165T", "G7589A", "A7689G", "G7790A", "A7791G", "A7862G", "C7921T", "G7957A", "A7962G", "G7977A", "A8076G", "T8279G", "G8393A", "G8486A", "A8517G", "G8518A", "G8666A"], "RT-p51": ["E245N"], "RT-p66": ["E245N", "S447N", "V517I"], "gp120": ["R18K", "L58M", "T191A", "K262E", "T277K", "R291-", "I295-", "N327-", "T385-", "I387T", "N437T"], "gp41": ["N129S", "D163S", "I187V", "E220G", "G225E", "H258R", "W326G"], "nef": ["R59E"], "p17": ["V7I", "S9T", "M31L"], "pro": ["K14R"], "rev": ["A37T"], "tat": ["G83D", "K85E"], "vif": ["F39V", "R41K", "E61D", "I180T"], "vpu": ["F30Y", "D73N"]}, "labels": {"aa": "RT-p51: E245N; RT-p66: E245N, S447N, V517I; gp120: R18K, L58M, T191A, K262E, T277K, R291-, I295-, N327-, T385-, I387T, N437T; gp41: N129S, D163S, I187V, E220G, G225E, H258R, W326G; nef: R59E; p17: V7I, S9T, M31L; pro: K14R; rev: A37T; tat: G83D, K85E; vif: F39V, R41K, E61D, I180T; vpu: F30Y, D73N"}}, "children": [{"name": "MN116208", "node_attrs": {"div": 0.16929, "accession": "MN116208", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CM"}, "date": {"value": 2003.0}, "Strain_name": {"value": "U8216"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T3G", "C4T", "T7C", "T12C", "A16-", "G21A", "T22-", "C23-", "G25-", "A26-", "G27-", "C28-", "C29-", "C30-", "G31-", "G32-", "T39C", "T41G", "G47A", "G50A", "G52A", "T119A", "-162G", "-163A", "-164G", "-166A", "C207T", "T227C", "A303-", "A353G", "A369C", "A386G", "C399A", "A440G", "T456C", "A461T", "T479C", "A499C", "T531C", "C535G", "C537A", "C539T", "G579A", "C590T", "C602T", "G607A", 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"A8576T", "A8584T", "G8590C", "A8604G", "C8699A", "T8740C", "C8751T", "T8770A", "C8789T", "G8794A", "G8804A", "G8807A", "A8809C", "C8813T", "A8814G", "C8828T", "T8855G", "G8864T", "C8867T", "A8874G", "G8902C", "G8904T", "A8917G", "A8922T", "A8924G", "A8933G", "T8939C", "A8942T", "A8947T", "T8951C", "-8988T", "G9016A", "G9019T", "C9064T", "C9068T", "T9071G", "T9072G", "T9073A", "T9079A", "A9082G", "T9084A"], "INT": ["R136K", "I203M", "T206S", "Q216H", "N254K", "S255G", "I267V"], "RT-p51": ["P4H", "D6E", "K11T", "S123T", "I142V", "I173A", "A207K", "A272G", "A286T", "E297V", "T312N", "D324E", "L325I", "V326I", "V329I", "I375V", "T377M", "T386V", "R390K"], "RT-p66": ["P4H", "D6E", "K11T", "S123T", "I142V", "I173A", "A207K", "A272G", "A286T", "E297V", "T312N", "D324E", "L325I", "V326I", "V329I", "I375V", "T377M", "T386V", "R390K", "H483Q", "E524K", "K527E"], "gp120": ["D4E", "N5D", "D21K", "N52D", "H57Y", "L97I", "D105N", "-107K", "-109L", "M133V", "R138W", "K141Q", "K143R", "H145R", "L151D", "I153L", "Q155S", "I156L", "N158D", "S161T", "S162E", "S181T", "D202N", "D251N", "V264I", "N273K", "T275I", "I279V", "H280R", "Q287R", "F289W", "-291T", "T292D", "D294I", "-295E", "Y302F", "I305V", "T308A", "E312K", "A318V", "K319A", "K322R", "L341P", "H347S", "K361A", "-367W", "-368N", "-369I", "-370S", "-371T", "I396V", "M398L", "K414V", "I415V", "V418R", "I424L", "N432R", "-433D", "T436E", "M447I", "R472K", "K474R"], "gp41": ["I4L", "S42G", "A96T", "T102S", "E109Q", "I118T", "S125D", "Q130L", "E133D", "I134L", "E151A", "A156T", "N160S", "T165S", "K172R", "V194I", "F206V", "P209L", "T210P", "H212Q", "R214G", "I222T", "D232N", "R233G", "V235I", "A243T", "D247E", "R259L", "G286W", "L290K", "A306T", "T307V", "A310T", "V318A", "V321I", "A325V"], "nef": ["S8R", "I10T", "V11A", "P14T", "R19Q", "I20M", "P25V", "E28A", "D54A", "V56A", "R71T", "L76V", "Y81F", "G83A", "S88G", "I133T", "F143Y", "R151K", "D156A", "K158E", "H171Q", "E174D", "R178G", "S187T", "A188S", "K192R", "I194L", "Y202F"], "p17": ["K12Q", "E42D", "E55A", "S66P", "T67S", "L68I", "V82I", "R91K", "E93D", "Q112K", "G121S", "G123K", "K127Q"], "p2": ["A7V", "N9Q", "-10P", "-11N"], "p24": ["V27I", "E71D", "E79D", "V83T", "V86I", "I91F", "D128E", "Y169F"], "p6": ["A12L", "N14S", "W15L", "M17I", "S24F", "-26Q", "K27E", "E29P", "Q30P", "K31-", "D32-", "K33-", "E34-", "H35-", "P36-", "P38S", "P49L", "S51L"], "p7": ["K7Q"], "pro": ["L10V", "G16E", "K20R", "I72V"], "rev": ["I21L", "Y28P", "S30P", "S31A", "E32G", "R50K", "Q51R", "R53H", "A54S", "I55L", "S61N", "R66G", "S67P", "Q95E", "V97L", "G104V", "V108E"], "tat": ["P3L", "N7K", "K29V", "K40N", "G57R", "T58G", "P59T", "N67T", "L74S", "I76T", "I77S", "S87Q"], "vif": ["R19K", "K36Q", "H48N", "L59V", "V65I", "R67K", "Q73H", "R92K", "N93T", "Y94F", "Q105R", "Q110H", "R131P", "Y135F", "S137T", "K141Q", "T154A", "R160K", "K167S", "N186Y", "*193W"], "vpr": ["E13V", "N28L", "Y45H"], "vpu": ["T2L", "E5Q", "S7C", "A27I", "R31K", "V43I", "K44E", "R47S"]}, "labels": {"aa": "INT: R136K, I203M, T206S, Q216H, N254K, S255G, I267V; RT-p51: P4H, D6E, K11T, S123T, I142V, I173A, A207K, A272G, A286T, E297V, T312N, D324E, L325I, V326I, V329I, I375V, T377M, T386V, R390K; RT-p66: P4H, D6E, K11T, S123T, I142V, I173A, A207K, A272G, A286T, E297V, T312N, D324E, L325I, V326I, V329I, I375V, T377M, T386V, R390K, H483Q, E524K, K527E; gp120: D4E, N5D, D21K, N52D, H57Y, L97I, D105N, -107K, -109L, M133V, R138W, K141Q, K143R, H145R, L151D, I153L, Q155S, I156L, N158D, S161T, S162E, S181T, D202N, D251N, V264I, N273K, T275I, I279V, H280R, Q287R, F289W, -291T, T292D, D294I, -295E, Y302F, I305V, T308A, E312K, A318V, K319A, K322R, L341P, H347S, K361A, -367W, -368N, -369I, -370S, -371T, I396V, M398L, K414V, I415V, V418R, I424L, N432R, -433D, T436E, M447I, R472K, K474R; gp41: I4L, S42G, A96T, T102S, E109Q, I118T, S125D, Q130L, E133D, I134L, E151A, A156T, N160S, T165S, K172R, V194I, F206V, P209L, T210P, H212Q, R214G, I222T, D232N, R233G, V235I, A243T, D247E, R259L, G286W, L290K, A306T, T307V, A310T, V318A, V321I, A325V; nef: S8R, I10T, V11A, P14T, R19Q, I20M, P25V, E28A, D54A, V56A, R71T, L76V, Y81F, G83A, S88G, I133T, F143Y, R151K, D156A, K158E, H171Q, E174D, R178G, S187T, A188S, K192R, I194L, Y202F; p17: K12Q, E42D, E55A, S66P, T67S, L68I, V82I, R91K, E93D, Q112K, G121S, G123K, K127Q; p2: A7V, N9Q, -10P, -11N; p24: V27I, E71D, E79D, V83T, V86I, I91F, D128E, Y169F; p6: A12L, N14S, W15L, M17I, S24F, -26Q, K27E, E29P, Q30P, K31-, D32-, K33-, E34-, H35-, P36-, P38S, P49L, S51L; p7: K7Q; pro: L10V, G16E, K20R, I72V; rev: I21L, Y28P, S30P, S31A, E32G, R50K, Q51R, R53H, A54S, I55L, S61N, R66G, S67P, Q95E, V97L, G104V, V108E; tat: P3L, N7K, K29V, K40N, G57R, T58G, P59T, N67T, L74S, I76T, I77S, S87Q; vif: R19K, K36Q, H48N, L59V, V65I, R67K, Q73H, R92K, N93T, Y94F, Q105R, Q110H, R131P, Y135F, S137T, K141Q, T154A, R160K, K167S, N186Y, *193W; vpr: E13V, N28L, Y45H; vpu: T2L, E5Q, S7C, A27I, R31K, V43I, K44E, R47S"}}}, {"name": "MG989495", "node_attrs": {"div": 0.14165, "accession": "MG989495", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2011.0}, "Strain_name": {"value": "2543513P000FL_Sj"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G378C", "C379A", "T422C", "T525C", "C544T", "T571A", "G582A", "A599G", "A647G", "G654A", "T662G", "C668T", "G697C", "A724T", "T734C", "C771T", "G803A", "G821A", "C897T", "C917T", "C1040T", "T1055C", "G1109A", "C1115T", "A1124G", "T1182C", "C1220T", "G1313A", "T1335C", "G1388A", "T1484C", "C1490G", "C1491G", "A1492G", "G1493C", "A1494C", "A1495C", "A1496G", "G1498A", "T1501G", "T1502A", "-1503A", "-1504T", "-1505T", "T1583C", "A1642G", "A1656C", "A1670G", "A1709G", "A1719G", "T1729G", "A1738G", "A1772G", "A1777G", "A1783C", "G1794A", "G1835A", "A1867G", "C1960T", "C1979G", "T1986C", "A2005G", "T2011C", "A2075C", "T2083C", "G2273A", "A2341G", "C2353T", "A2404G", "A2422G", "T2440C", "C2503T", "G2539A", "G2542A", "G2578A", "A2618T", "G2656A", 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"T8374-", "G8388A", "G8393A", "G8394A", "A8403G", "G8404A", "A8408G", "A8426G", "A8455C", "T8501A", "G8506A", "G8508A", "T8509C", "G8554A", "T8582A", "T8603C", "A8617G", "C8684T", "A8717T", "C8727T", "A8739G", "T8756C", "G8774A", "C8790G", "A8793G", "G8804A", "A8819G", "C8840T", "C8859A", "T8903C", "G8904A", "C8921T", "A8922G", "A8967G", "A8970G", "G8971T", "T8974C", "C8975T", "T8976A", "A8978C", "C8979T", "T8980A", "G8983-", "C9039T", "T9074G"], "RT-p51": ["A272G", "D291E", "K350R"], "RT-p66": ["A272G", "D291E", "K350R", "A446S", "S447N", "H483Y"], "gp120": ["S1N", "S3T", "D4E", "D21N", "I56L", "H57P", "E59K", "Q86E", "V92T", "K93M", "T104I", "A106L", "-107N", "-109T", "-111L", "-112T", "-113N", "-114S", "-115Y", "-116S", "-117A", "-118S", "-119E", "-120A", "-121P", "-122E", "-123I", "-124G", "E125N", "V126I", "K141E", "D157G", "R164V", "I166K", "V180I", "S181T", "T191A", "A196V", "D202E", "N206T", "T208K", "L249I", "A253T", "T255N", "K262E", "S272F", "N274T", "I279-", "S280-", "I281-", "F289Y", "G293E", "E294K", "R299K", "K300Q", "E304Q", "G307V", "N311K", "K322G", "-326T", "I332R", "-367H", "-368L", "-369K", "-370N", "-384D", "I387R", "G401R", "S412N", "G413E", "-433S", "N434T", "N446D", "E462R", "K474R"], "gp41": ["M54L", "V69I", "F81L", "S101N", "E109G", "N129D", "D153N", "A156T", "D163N", "P209L", "G226A", "S256C", "A268T", "E272K", "L304F", "A310T", "V321F", "I329F", "L340F", "L345Q"], "nef": ["G3N", "S8-", "S9-", "I10-", "V11-", "V16I", "E18K", "R21E", "D38A", "S55N", "V56T", "R71K", "K92R", "Q125H", "P129S", "I133V", "P150A", "R151G", "A188T", "I194V"], "p1": ["G3W"], "p17": ["K18R", "F79Y", "A83V", "I104M", "K109R", "T115K", "G121D", "N125D", "Q130H"], "p2": ["V7H", "Q8T"], "p24": ["V11I", "L15I", "H87Q", "I91F", "N120H", "S225T", "R229K", "V230I"], "p6": ["P5T", "N14D", "I21G", "T22M", "S23T", "P25L", "-26L", "V39S"], "p7": ["K7Q", "D48E"], "pro": ["K20R", "V82I"], "rev": ["K20R", "S67P", "Q74L", "L83I", "S86N", "G90E", "I109V", "S112P", "T114A"], "tat": ["T19K", "L36I", "P84Q"], "vif": ["F39C", "L59I", "K63R", "R67K", "D117E", "K122R", "R130S", "R131Y", "N140S", "K167R", "K176E", "R181K", "N186D"], "vpr": ["Q3R", "P10S", "E13G", "R36T", "P37T", "Y45H", "V70I", "F72Y"], "vpu": ["V10A", "V14I", "L16F", "L18A", "K32R", "L34V", "V43L", "A50E"]}, "labels": {"aa": "RT-p51: A272G, D291E, K350R; RT-p66: A272G, D291E, K350R, A446S, S447N, H483Y; gp120: S1N, S3T, D4E, D21N, I56L, H57P, E59K, Q86E, V92T, K93M, T104I, A106L, -107N, -109T, -111L, -112T, -113N, -114S, -115Y, -116S, -117A, -118S, -119E, -120A, -121P, -122E, -123I, -124G, E125N, V126I, K141E, D157G, R164V, I166K, V180I, S181T, T191A, A196V, D202E, N206T, T208K, L249I, A253T, T255N, K262E, S272F, N274T, I279-, S280-, I281-, F289Y, G293E, E294K, R299K, K300Q, E304Q, G307V, N311K, K322G, -326T, I332R, -367H, -368L, -369K, -370N, -384D, I387R, G401R, S412N, G413E, -433S, N434T, N446D, E462R, K474R; gp41: M54L, V69I, F81L, S101N, E109G, N129D, D153N, A156T, D163N, P209L, G226A, S256C, A268T, E272K, L304F, A310T, V321F, I329F, L340F, L345Q; nef: G3N, S8-, S9-, I10-, V11-, V16I, E18K, R21E, D38A, S55N, V56T, R71K, K92R, Q125H, P129S, I133V, P150A, R151G, A188T, I194V; p1: G3W; p17: K18R, F79Y, A83V, I104M, K109R, T115K, G121D, N125D, Q130H; p2: V7H, Q8T; p24: V11I, L15I, H87Q, I91F, N120H, S225T, R229K, V230I; p6: P5T, N14D, I21G, T22M, S23T, P25L, -26L, V39S; p7: K7Q, D48E; pro: K20R, V82I; rev: K20R, S67P, Q74L, L83I, S86N, G90E, I109V, S112P, T114A; tat: T19K, L36I, P84Q; vif: F39C, L59I, K63R, R67K, D117E, K122R, R130S, R131Y, N140S, K167R, K176E, R181K, N186D; vpr: Q3R, P10S, E13G, R36T, P37T, Y45H, V70I, F72Y; vpu: V10A, V14I, L16F, L18A, K32R, L34V, V43L, A50E"}}}, {"name": "CRF01_AE_NODE_0000005", "node_attrs": {"div": 0.14181, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C4-", "C6-", "T10G", "G15-", "A16-", "C17-", "C18-", "G21T", "T22G", "-24G", "G25A", "G27T", "C29T", "C30T", "G31T", "G32C", "G47A", "G50A", "T201C", "A302T", "G354A", "G428A", "T456C", "T479C", "A497G", "A509G", "A534G", "T570C", "A584C", "A585G", "C586T", "G614T", "T641C", "A645C", "A699G", "G706A", "C731T", "G747A", "G791A", "T827C", "C830T", "C851T", "G866A", "T884C", "G978T", "A1133T", "G1192A", "C1211T", "T1238C", "G1253A", "A1277G", "A1301G", "T1329G", "T1334C", "A1339G", "A1350C", "G1354C", "G1388A", "A1412G", "G1430A", "C1442T", "C1449A", "A1455-", "A1456-", "T1457-", "-1458A", "-1459A", "-1460C", "C1511T", "C1517T", "T1571A", "A1587G", "A1618G", "A1644T", "T1646C", "A1657G", "A1664G", "A1718G", "G1725A", "G1727C", "A1728-", "T1729-", "G1730-", "G1731A", "G1733A", "G1734A", "A1735C", "G1737C", "A1740C", "T1741C", "-1745A", "-1746G", "-1747C", "-1748C", "T1749C", "C1751A", "-1753C", "C1755A", "A1759G", "C1761G", "C1792T", "A1819G", "G1855A", "T2101C", "T2104C", "G2134A", "A2179G", "T2206C", "A2212G", "C2236T", "C2301G", "G2332A", "G2426A", "G2428A", "C2521T", "G2580A", "A2612C", "G2630A", "T2638C", "G2704A", "A2743C", "T2770C", "G2808A", "C2845T", "A2915G", "G2920A", "G3010A", "G3016A", "C3030A", "A3124G", "A3145G", "A3166C", "G3211A", "A3238G", "C3266T", "A3283G", "G3316A", "T3346C", "T3433C", "C3469T", "G3473A", "G3490A", "G3494A", "T3496A", "T3577C", "G3617A", "G3631A", "G3644A", "A3727T", "T3742C", "T3755C", "A3868T", "G3877A", "T3904C", "A3931T", "A3934G", "G3952A", "A3979G", "G3989A", "T4024C", "A4105G", "C4181A", "C4198T", "T4216C", "T4234C", "G4276C", "A4391T", "T4412C", "G4677A", "T4702C", "A5038G", "G5427A", "A5613C", "G5619A", "G5734A", "A5792-", "G5794-", "A5795-", "T5797-", "G5799-", "C5802T", "A5803G", "T5808G", "-5809G", "T6072C", "-6174C", "T6178C", "T6187C", "A6194G", "T6213G", "-6225A", "C6317A", "G6605A", "-6697G", "A6703-", "A6734G", "A6751G", "-6834T", "A6848C", "C6854G", "-6971A", "-6973A", "-6977G", "-6981G", "-6986A", "-6987A", "-6994T", "A7085G", "G7106A", "A7161G", "G7195A", "G7212A", "C7238G", "G7366A", "C7463A", "T7575C", "C7576T", "A7630T", "A7692T", "C7732A", "A7791G", "C7951A", "A7964G", "G7992A", "C8038G", "T8366C", "-8367A", "-8368G", "-8370A", "-8372A", "-8373G", "-8375G", "G8479C", "G8499A", "A8540G", "A8584T", "T8786G", "G8846A", "A8873C"], "INT": ["V72I", "E167D", "T206S"], "RT-p51": ["T69S", "V111I", "C162Y", "I173L", "V179I", "R238K", "I274V", "T312N", "K357N"], "RT-p66": ["T69S", "V111I", "C162Y", "I173L", "V179I", "R238K", "I274V", "T312N", "K357N", "D460N", "V467I", "A508T", "V517I", "K554Q"], "gp120": ["V73A", "N108-", "Q155K", "S161-", "D251N", "I281M", "-326I", "I332L", "Q334E", "-367C", "-368I", "-378N", "-379E", "-380T", "-381A", "-382G", "I411V", "V418I", "T436S", "M447I", "S453N"], "gp41": ["I91T", "E109D", "Q130L", "D163S", "R221G", "G230D"], "nef": ["S46T", "Y81F", "M168I", "M173L", "E177D"], "p1": ["I5F", "N9S"], "p17": ["V7I", "M31L", "T67A", "F79H", "T84V", "E93D", "I104L", "T122A", "S124N"], "p2": ["Q6H", "-10T", "-11N"], "p24": ["A6T", "V83L", "R154K", "S200A", "K203R", "T207P", "G208A"], "p6": ["G16-", "M17R", "G18R", "E20Q", "I21T", "S24P", "Q28-", "Q30-", "K31-", "H35-", "P36-", "P38L", "N47S"], "p7": ["K41E", "E51G"], "rev": ["K39R", "S61C", "L64V"], "tat": ["T24N", "P81Q"], "vif": ["V31I", "F39S", "K151R"], "vpr": ["Y15N"], "vpu": ["V43I"]}, "labels": {"aa": "INT: V72I, E167D, T206S; RT-p51: T69S, V111I, C162Y, I173L, V179I, R238K, I274V, T312N, K357N; RT-p66: T69S, V111I, C162Y, I173L, V179I, R238K, I274V, T312N, K357N, D460N, V467I, A508T, V517I, K554Q; gp120: V73A, N108-, Q155K, S161-, D251N, I281M, -326I, I332L, Q334E, -367C, -368I, -378N, -379E, -380T, -381A, -382G, I411V, V418I, T436S, M447I, S453N; gp41: I91T, E109D, Q130L, D163S, R221G, G230D; nef: S46T, Y81F, M168I, M173L, E177D; p1: I5F, N9S; p17: V7I, M31L, T67A, F79H, T84V, E93D, I104L, T122A, S124N; p2: Q6H, -10T, -11N; p24: A6T, V83L, R154K, S200A, K203R, T207P, G208A; p6: G16-, M17R, G18R, E20Q, I21T, S24P, Q28-, Q30-, K31-, H35-, P36-, P38L, N47S; p7: K41E, E51G; rev: K39R, S61C, L64V; tat: T24N, P81Q; vif: V31I, F39S, K151R; vpr: Y15N; vpu: V43I"}}, "children": [{"name": "MT222954", "node_attrs": {"div": 0.16398, "accession": "MT222954", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "VN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DE00114VN001"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G2T", "-4G", "-6T", "C1782A", "A1783T", "T1784G", "G4708A", "C4728A", "C4761A", "G4779A", "C4820A", "T4827C", "A4838G", "G4855A", "A4860G", "G4861A", "A4865T", "T4883C", "C4889T", "C4937A", "A4951G", "C4977T", "G4978A", "T4991C", "A5045G", "A5065G", "A5086G", "A5148C", "A5186C", "T5188G", "A5246C", "T5263C", "A5278G", "A5285G", "A5345G", "G5385A", "C5425A", "G5444C", "A5462G", "C5478T", "C5482A", "G5599A", "T5602A", "A5611T", "C5612T", "A5626G", "G5627C", "G5652A", "C5653T", "A5655T", "A5665G", "A5689G", "T5696A", "A5737C", "-5792C", "-5794A", "-5795C", "-5797C", "-5799T", "C5801T", "T5802G", "C5806A", "-5810G", "-5811T", "T5813-", "G5814-", "G5815-", "A5816-", "G5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "G5824-", "G5856A", "C5860T", "C5869T", "A5926C", "G5972A", "A6020T", "G6076A", "C6097T", "T6101C", "C6116T", "T6151G", "T6163C", "C6165A", "C6166T", "-6170A", "-6172T", "A6173T", "C6175G", "A6177C", "T6180A", "T6184C", "T6186C", "C6187A", "A6188T", "C6189A", "-6207C", "A6209C", "G6218A", "A6219T", "-6226T", "A6234G", "A6261T", "G6267A", "A6268T", "A6324G", "T6325C", "T6328G", "A6329G", "A6333T", "T6334G", "A6335-", "G6336-", "T6337-", "A6338-", "G6339-", "C6370A", "A6371G", "T6385C", "A6425G", "C6441T", "T6466A", "G6475A", "G6547A", "G6550A", "T6551C", "A6640G", "T6641A", "C6670T", "C6684T", "A6686G", "A6691G", "G6693C", "T6694C", "A6715T", "A6759T", "A6781T", "G6788A", "A6789G", "T6793A", "A6798G", "G6802A", "C6807T", "A6810G", "A6850C", "A6881G", "A6913G", "-6955T", "-6956A", "-6957T", "-6958A", "-6960A", "A6961C", "-6966A", "-6967A", "-6972C", "-6974G", "-6975C", "-6976A", "-6978G", "-6979T", "-6980G", "-6982G", "-6983T", "-6984G", "-6985T", "-6988T", "-6991C", "-6993C", "T7009-", "C7016A", "G7027A", "A7030T", "T7059C", "G7132A", "A7152C", "T7162G", "T7165C", "G7168A", "A7275G", "G7441A", "A7540G", "G7543A", "G7589A", "C7590A", "T7622A", "G7631C", "T7636C", "G7640A", "A7646T", "A7655G", "T7656C", "A7688G", "A7701G", "G7702A", "A7714T", "T7715A", "G7744A", "G7750A", "A7782G", "T7843C", "G7980A", "A8009C", "A8011C", "G8019A", "A8029T", "C8037T", "C8044A", "C8092A", "A8093C", "G8105A", "A8111G", "T8171G", "G8180A", "C8223T", "G8231A", "G8274T", "T8279G", "C8291A", "C8296T", "A8305G", "A8323T", "C8342A", "G8349A", "G8357T", "A8386G", "G8393A", "G8405A", "A8426G", "A8447G", "T8501A", "A8525C", "A8531T", "A8536G", "G8561A", "A8570G", "T8582C", "T8585C", "T8594G", "A8617G", "C8640T", "C8684T", "A8717T", "A8746T", "A8750C", "T8756C", "A8793G", "T8860A", "G8861A", "C8867T", "T8903C", "G8904T", "A8942T", "A8977G", "G8982A", "G9132A", "T9171C", "T9172A", "G9173T", "G9175C", "C9178G"], "gp120": ["S1N", "V40I", "I56L", "A106-", "N110-", "K127R", "E136V", "R138N", "N158M", "K159-", "N160-", "S162-", "I173V", "T191A", "A196V", "N204K", "S263T", "S280G", "-282T", "-283M", "R287H", "Y302F", "K309N", "E312R", "K315R", "A318V", "I343V", "-369N", "-383G", "-384C", "L388I", "V402A", "-433T", "S436G", "K474R"], "gp41": ["A96N", "S107T", "E110Q", "D113N", "M115L", "I118A", "N129D", "E133G", "E137D", "S138T", "D143E", "N160S", "G226D", "S239N", "L242F", "A245V", "D247E", "F263L", "I264L", "A268T", "T270A", "L290V", "G293S", "T307I", "A310T", "R324I", "W326G", "L330I", "L340F"], "nef": ["G3S", "W5C", "Q15R", "-50N", "-51T", "N52D", "A53S", "D54V", "S55-", "V56-", "Q61H", "E63D", "E65G", "K92R", "Q125H", "Y135F", "R151G", "L173Q", "A188S"], "p6": ["R17S", "-19T", "T21P", "S23A", "-26Q", "E29-", "-35M", "-36R"], "rev": ["E54A", "I55L", "H82T", "S86N", "D88G", "V108G", "G111E"], "tat": ["Q17K", "N23T", "K29R", "L36I"], "vif": ["R41K", "H48N", "L59I", "V65I", "D78E", "R90K", "R92E", "D117E", "K122R", "R131Y", "K160R", "K167R", "T188P"], "vpr": ["N15S", "N28Q", "N48H", "I61V", "G94S"], "vpu": ["T2F", "S7A", "L16F", "I20V", "I28V", "F30Y", "K44Q", "K66T"]}, "labels": {"aa": "gp120: S1N, V40I, I56L, A106-, N110-, K127R, E136V, R138N, N158M, K159-, N160-, S162-, I173V, T191A, A196V, N204K, S263T, S280G, -282T, -283M, R287H, Y302F, K309N, E312R, K315R, A318V, I343V, -369N, -383G, -384C, L388I, V402A, -433T, S436G, K474R; gp41: A96N, S107T, E110Q, D113N, M115L, I118A, N129D, E133G, E137D, S138T, D143E, N160S, G226D, S239N, L242F, A245V, D247E, F263L, I264L, A268T, T270A, L290V, G293S, T307I, A310T, R324I, W326G, L330I, L340F; nef: G3S, W5C, Q15R, -50N, -51T, N52D, A53S, D54V, S55-, V56-, Q61H, E63D, E65G, K92R, Q125H, Y135F, R151G, L173Q, A188S; p6: R17S, -19T, T21P, S23A, -26Q, E29-, -35M, -36R; rev: E54A, I55L, H82T, S86N, D88G, V108G, G111E; tat: Q17K, N23T, K29R, L36I; vif: R41K, H48N, L59I, V65I, D78E, R90K, R92E, D117E, K122R, R131Y, K160R, K167R, T188P; vpr: N15S, N28Q, N48H, I61V, G94S; vpu: T2F, S7A, L16F, I20V, I28V, F30Y, K44Q, K66T"}}}, {"name": "MT222955", "node_attrs": {"div": 0.16469999999999999, "accession": "MT222955", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "VN"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DE00114VN003"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T3-", "T5-", "T7-", "C8-", "T9-", "G33C", "A1781C", "A4774G", "A4806C", "C4820T", "C4826A", "G4859A", "A4863G", "A4870T", "T5028C", "G5059A", "A5112G", "T5147A", "A5173G", "A5187G", "T5237C", "A5247C", "G5312A", "G5382A", "C5384T", "T5412G", "G5437C", "T5515C", "C5538T", "G5545C", "A5548G", "A5581G", "A5594G", "C5613T", "T5636C", "G5692C", "T5695A", "A5701G", "A5702G", "A5704G", "T5705A", "A5711G", "A5720G", "C5756A", "A5760G", "G5791-", "T5793-", "A5796-", "T5798-", "C5801A", "A5805G", "C5806T", "-5810C", "-5811C", "T5827C", "G5864A", "G5893A", "T5896C", "C5951T", "C5982T", "A5983G", "C5984T", 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"node_attrs": {"div": 0.12405999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G458A", "G866A", "A1587C", "G1794A", "G2173A", "A2176C", "C2302T", "G2473A", "A2566G", "G3473A", "T3577C", "G3685A", "G4060A", "C5041T", "G5448A", "-6174A", "A6200G", "C6263A", "-6340T", "A6718G", "G6798T", "A6810C", "G6910A", "T6953-", "G6954-", "-6977G", "-6978A", "-6979G", "-6980G", "-6981G", "-6982G", "C7463A", "G7717A", "A7733C", "A7734G", "A8584T", "A8746T", "G8848A"], "gp41": ["K144R"], "nef": ["Y81F", "Y135F"], "p7": ["K41Q"], "vif": ["A152V"]}, "labels": {"aa": "gp41: K144R; nef: Y81F, Y135F; p7: K41Q; vif: A152V"}}, "children": [{"name": "MW079305", "node_attrs": {"div": 0.14706, "accession": "MW079305", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06GXD217"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C426A", "G455A", "C467T", "C535A", 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"E93G", "G121D", "P122S", "S125N", "Q130H"], "p2": ["Q6H", "V12N", "-13V"], "p24": ["V83T", "T107S", "G120S", "P123S"], "p6": ["T8S", "I21T", "T22L", "S23-", "F24-", "L25-", "N47S"], "p7": ["D48E"], "pro": ["L10V", "T12P", "K14R", "G16E"], "rev": ["S31P", "A37T", "I59V", "T68P", "H82R", "V108G"], "tat": ["N12K", "Q17K", "I69L", "E71K", "I76V", "I77T", "P81Q", "G83D", "P84Q"], "vif": ["F39S", "H48N", "V65I", "I66V", "R131S"], "vpr": ["N48D", "E55A", "Q66H"], "vpu": ["C7W", "I13V", "A27G", "K32R", "R41K", "V43I", "A50E", "V82L"]}, "labels": {"aa": "INT: I31V, N39S, L45Q, R136Q; RT-p51: I5V, D6E, T11K, K43E, W88C, V118I, I135T, I202V, L210S, K275R, K277R, L295M, V326I; RT-p66: I5V, D6E, T11K, K43E, W88C, V118I, I135T, I202V, L210S, K275R, K277R, L295M, V326I; gp120: N4S, D21N, H44Y, I56L, H57Y, N70-; gp41: I118T, E133D, E137K, N140D, D163S, H211R, I264A, L290A, A306T, T307I; nef: G3C, S9-, I10-, V11-, G12-, R22Q, V56A, D65G, G83E, I133T, K158R, M168V, K192R, L198M; p1: N9H; p17: T67N, R91H, E93G, G121D, P122S, S125N, Q130H; p2: Q6H, V12N, -13V; p24: V83T, T107S, G120S, P123S; p6: T8S, I21T, T22L, S23-, F24-, L25-, N47S; p7: D48E; pro: L10V, T12P, K14R, G16E; rev: S31P, A37T, I59V, T68P, H82R, V108G; tat: N12K, Q17K, I69L, E71K, I76V, I77T, P81Q, G83D, P84Q; vif: F39S, H48N, V65I, I66V, R131S; vpr: N48D, E55A, Q66H; vpu: C7W, I13V, A27G, K32R, R41K, V43I, A50E, V82L"}}}, {"name": "GU564221", "node_attrs": {"div": 0.14484999999999998, "accession": "GU564221", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05GX001"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A452G", "A576G", "A585G", "C586T", "G592A", "G593T", "G614T", "A628G", "G706A", "T774G", "A829G", "T852A", "A1089G", "A1196G", "G1208A", "A1370G", "C1440A", "C1453T", "G1493A", "G1640A", "T1646C", "G1673A", "A1709G", "-1745C", "-1746T", "-1747C", "-1748C", "C1750T", "A1783C", "T1903A", "G1969A", 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"I178M", "K395R", "D460N", "H483Y"], "gp120": ["V40I", "E74Q", "D105E", "-109I", "N111D", "L137I", "Q138N", "I156M", "D157H", "N158S", "S161N", "V172A", "V180I", "I197M", "N204K", "A253T", "T255I", "R270K", "S280T", "V288M", "G315V", "K319A", "-326K", "P335Q", "T344R", "N349S", "-375E", "-376G", "-377C", "-378N", "-379N", "-380T", "G401R", "K414R", "G431D", "N432S", "N434-", "T436M"], "gp41": ["I91V", "S101N", "Y108F", "D113N", "N129G", "Q130L", "N140T", "D143E", "N166K", "T208I", "D232N", "D247N", "F263S", "S299G", "I301V", "D305N", "G313E", "I329F", "L345V"], "nef": ["R21K", "A32K", "I101V", "P150T", "R151G", "V153I", "D156E", "E177D", "E201D"], "p17": ["M31L", "T81A", "T84V", "W86Y", "E93D", "K98R", "S124N"], "p2": ["Q6N", "-10V", "A11N"], "p24": ["L15V", "N33S", "S41T"], "p6": ["H35Y", "S39P"], "pro": ["D35E", "V82I"], "rev": ["L12I", "I21F", "R50K", "L64V", "G65E", "P100S", "V108A", "I109V", "*117W"], "tat": ["N21D", "T58N", "N67I", "I69V", "P73S"], "vif": ["V31I", "E61D", "K63R", "R67K", "H80Q", "Q110Y", "P177S", "N186-", "P187-"], "vpr": ["A4V", "P10S", "E13N", "P14-", "Y15-", "T49N"], "vpu": ["T2S", "F30L"]}, "labels": {"aa": "RT-p51: K39N, I178M, K395R; RT-p66: K39N, I178M, K395R, D460N, H483Y; gp120: V40I, E74Q, D105E, -109I, N111D, L137I, Q138N, I156M, D157H, N158S, S161N, V172A, V180I, I197M, N204K, A253T, T255I, R270K, S280T, V288M, G315V, K319A, -326K, P335Q, T344R, N349S, -375E, -376G, -377C, -378N, -379N, -380T, G401R, K414R, G431D, N432S, N434-, T436M; gp41: I91V, S101N, Y108F, D113N, N129G, Q130L, N140T, D143E, N166K, T208I, D232N, D247N, F263S, S299G, I301V, D305N, G313E, I329F, L345V; nef: R21K, A32K, I101V, P150T, R151G, V153I, D156E, E177D, E201D; p17: M31L, T81A, T84V, W86Y, E93D, K98R, S124N; p2: Q6N, -10V, A11N; p24: L15V, N33S, S41T; p6: H35Y, S39P; pro: D35E, V82I; rev: L12I, I21F, R50K, L64V, G65E, P100S, V108A, I109V, *117W; tat: N21D, T58N, N67I, I69V, P73S; vif: V31I, E61D, K63R, R67K, H80Q, Q110Y, P177S, N186-, P187-; vpr: A4V, P10S, E13N, P14-, Y15-, T49N; vpu: T2S, F30L"}}}]}, {"name": "CRF01_AE_NODE_0000008", "node_attrs": {"div": 0.12588, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A513C", "C535A", "G683A", "C830T", "G978T", "A1359T", "A1445G", "-1747C", "T1986C", "T2392G", "A2419G", "G2909C", "A2937G", "A2969G", "A2989G", "A3196G", "T3303C", "G3304A", "G3644A", "A4850G", "A5613T", "A6692T", "G6809A", "A6818G", "A6819G", "-6955C", "-6956A", "-6971A", "-6993G", "T7090G", "G7095T", "A7158C", "T7159A", "T7162G", "C7164A", "G7295C", "T7575C", "G7589A", "A7709G", "A7796T", "G8231A"], "RT-p51": ["A272P", "K281R", "I292V", "M403T"], "RT-p66": ["A272P", "K281R", "I292V", "M403T", "H480Q", "V517I"], "gp120": ["H57Y", "E136V", "T277K", "K322G", "-370S", "S412R", "T439I", "E481Q"], "gp41": ["M54L", "I91T", "N129S", "T136A", "D143E", "T165S"], "p17": ["M31L", "I60L", "T67N"], "p24": ["V83L", "T210S"], "vpu": ["E5A"]}, "labels": {"aa": "RT-p51: A272P, K281R, I292V, M403T; RT-p66: A272P, K281R, I292V, M403T, H480Q, V517I; gp120: H57Y, E136V, T277K, K322G, -370S, S412R, T439I, E481Q; gp41: M54L, I91T, N129S, T136A, D143E, T165S; p17: M31L, I60L, T67N; p24: V83L, T210S; vpu: E5A"}}, "children": [{"name": "MT635160", "node_attrs": {"div": 0.16201, "accession": "MT635160", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "VN"}, "date": {"value": 2012.0}, "Strain_name": {"value": "VN_293"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G186-", "T200C", "T201C", "A224G", "T227A", "A302T", "G354A", "A423T", "G425T", "T456G", "T473C", "C496G", "A515G", "T536C", "C558A", "G579A", "A605G", "C668T", "C672A", "C707T", "A755G", "G791A", "T858C", "G977A", "A991C", "A1002G", "G1025T", "A1089C", "G1090A", "G1109A", "G1127A", "C1235T", "T1244C", "C1280T", "A1313G", "T1334C", "G1418A", "C1440A", "A1441G", "G1443A", "G1452A", "A1455G", "A1456C", "T1457G", "G1493A", "G1508A", "G1589A", "A1614T", "G1670A", "A1691G", "A1736G", 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"A8793G", "G8804A", "G8808A", "A8823G", "G8846A", "C8859T", "G8902C", "T8903C", "G8904A", "C8905G", "A8924C", "A8942T", "G8981A", "C9018T", "T9097G", "G9132A", "C9155A", "T9156A", "C9157A", "-9160A", "-9161A", "-9162A", "-9163A", "-9164A", "-9165A", "-9166A", "-9167A", "G9168A", "C9169A"], "INT": ["I60L", "T97A", "V126M", "V165I", "E167D"], "RT-p51": ["K39E", "V111I", "I135T", "I173T", "G196E", "T200A", "K275Q", "P294T", "E297K", "A304E", "A376S", "V435I"], "RT-p66": ["K39E", "V111I", "I135T", "I173T", "G196E", "T200A", "K275Q", "P294T", "E297K", "A304E", "A376S", "V435I", "S447N"], "gp120": ["N71K", "V73A", "E74D", "Q86E", "T104I", "A106F", "-109D", "E125-", "V126-", "N132F", "T134N", "K141Q", "I156M", "D157S", "N159K", "N160H", "S161R", "S162E", "V172T", "T191A", "N204S", "N213K", "E240G", "S272G", "T275Q", "S278T", "I279M", "I281M", "Q287R", "R291T", "T292D", "G293D", "D294V", "I295V", "G307R", "V313T", "T318R", "H324-", "N327-", "K329-", "T332K", "P336H", "N349I", "C365E", "T366S", "-367W", "-368C", "-369N", "-371S", "N397R", "R412K", "K414V", "N432K", "-433N", "N434K", "N435T", "T436E", "T437S", "G443E", "E479D"], "gp41": ["M7L", "K80Q", "A96T", "D113Y", "I118V", "A136V", "E137K", "D148E", "A156S", "D163N", "K172R", "I176M", "S180G", "T208I", "H212Q", "E223G", "V235I", "D247N", "F255C", "S256C", "H258R", "I264A", "A268T", "R277S", "A310T", "A343S"], "nef": ["G3N", "S9-", "I10-", "V11-", "G12-", "V16I"], "p17": ["V7I", "R30C", "L41V", "A54G", "L75I", "V82I", "Q113S"], "p2": ["Q6S", "V7M", "-10T"], "p24": ["H87P", "I91V", "E98D", "G120H"], "p6": ["T22A", "Q30K", "S51L"], "p7": ["T50S"], "pro": ["L10I", "D60E", "L63T", "T91I"], "rev": ["I21A", "S31A", "R53H", "E54Q", "G65E", "T68P", "Q74L", "H82C", "S86N", "I109V", "K115Q"], "tat": ["T24N", "Y47H", "N67S", "P68L", "P73S", "I77S"], "vif": ["F39V", "H56Q", "V65I", "Q91L", "L102Q", "Q105R", "R131S", "E134D", "E179K", "I180V", "E185D"], "vpr": ["A4T", "G6E", "D7G", "G9R", "E13Q", "Y15N", "H40L", "I84M"], "vpu": ["P3S", "C7W", "E29Q", "F30L", "K32E", "L42I", "V43I", "R47S", "N73D"]}, "labels": {"aa": "INT: I60L, T97A, V126M, V165I, E167D; RT-p51: K39E, V111I, I135T, I173T, G196E, T200A, K275Q, P294T, E297K, A304E, A376S, V435I; RT-p66: K39E, V111I, I135T, I173T, G196E, T200A, K275Q, P294T, E297K, A304E, A376S, V435I, S447N; gp120: N71K, V73A, E74D, Q86E, T104I, A106F, -109D, E125-, V126-, N132F, T134N, K141Q, I156M, D157S, N159K, N160H, S161R, S162E, V172T, T191A, N204S, N213K, E240G, S272G, T275Q, S278T, I279M, I281M, Q287R, R291T, T292D, G293D, D294V, I295V, G307R, V313T, T318R, H324-, N327-, K329-, T332K, P336H, N349I, C365E, T366S, -367W, -368C, -369N, -371S, N397R, R412K, K414V, N432K, -433N, N434K, N435T, T436E, T437S, G443E, E479D; gp41: M7L, K80Q, A96T, D113Y, I118V, A136V, E137K, D148E, A156S, D163N, K172R, I176M, S180G, T208I, H212Q, E223G, V235I, D247N, F255C, S256C, H258R, I264A, A268T, R277S, A310T, A343S; nef: G3N, S9-, I10-, V11-, G12-, V16I; p17: V7I, R30C, L41V, A54G, L75I, V82I, Q113S; p2: Q6S, V7M, -10T; p24: H87P, I91V, E98D, G120H; p6: T22A, Q30K, S51L; p7: T50S; pro: L10I, D60E, L63T, T91I; rev: I21A, S31A, R53H, E54Q, G65E, T68P, Q74L, H82C, S86N, I109V, K115Q; tat: T24N, Y47H, N67S, P68L, P73S, I77S; vif: F39V, H56Q, V65I, Q91L, L102Q, Q105R, R131S, E134D, E179K, I180V, E185D; vpr: A4T, G6E, D7G, G9R, E13Q, Y15N, H40L, I84M; vpu: P3S, C7W, E29Q, F30L, K32E, L42I, V43I, R47S, N73D"}}}, {"name": "MT635174", "node_attrs": {"div": 0.16141, "accession": "MT635174", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "VN"}, "date": {"value": 2011.0}, "Strain_name": {"value": "VN_633"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C93G", "A97T", "T161-", "A386G", "G424A", "G455A", "A461C", "A503G", "A516T", "G524A", "C539T", "G542A", "T560C", "G579C", "A585G", "C586T", "A599G", "T655C", "G665A", "A678G", "T774G", "T788C", "G821A", "T1052C", "C1060A", "A1089G", "C1098G", "A1193G", "T1229C", "G1232A", "A1263T", "T1329A", "G1341T", "A1397G", "A1412G", "G1438A", "C1442A", "G1443C", "G1452C", "A1464T", "G1466T", "G1586A", "C1613T", "C1615A", "G1619A", "A1642G", "G1643A", "C1644A", "G1673A", "G1687A", "G1718A", "C1721T", "-1745C", "-1746T", "-1748C", "C1750T", "T1784G", "C1786T", "T1791G", "C1826G", "T1854A", "A1907G", "T1909A", "C1985T", "A2007G", "G2065A", "C2113T", "G2134A", "C2302A", "A2314G", "A2320G", "A2422G", "T2449C", "T2613A", "A2614G", "T2620C", "A2629G", "C2689T", "G2878A", "A2923G", "C2942A", "G2951A", "C2968A", "A2986G", "G3004A", "G3044A", "T3045C", "G3071A", "A3124G", "T3346C", "T3380C", "G3490A", "G3491A", "T3535G", "A3583G", "A3608G", "A3637C", "A3703G", "A3706G", "A3760G", "A3761G", "G3766A", "G3769A", "A3775C", "A3891G", "T3904C", "C3908T", "A4051G", "A4066T", "C4126T", "G4151C", "C4181A", "G4237C", "T4321C", "C4471T", "G4516A", "T4667C", "G4673A", "T4674C", "G4677A", "G4697A", "T4702C", "G4723A", "A4774G", "C4826A", "G4855A", "A4990T", "T4991C", "A5021G", "A5024G", "A5038G", "G5075A", "A5119G", "G5128A", "G5131A", "A5140G", "A5148T", "A5150G", "A5246G", "C5248A", "C5250A", "G5276A", "C5292T", "A5302G", "A5345G", "T5412A", "T5415C", "T5436A", "T5462A", "C5482A", "A5484G", "G5599A", "T5602A", "A5611C", "C5615T", "A5621T", "A5623G", "A5644G", "T5669C", "A5699G", "A5710C", "G5712A", "G5718A", "A5746G", "G5747C", "A5760G", "A5864G", "T5887C", "T5917G", "A5957C", "G5972A", "C6004A", "A6030C", "T6100C", "C6143T", "T6151A", "G6167-", "A6168-", "T6169-", "T6171-", "A6173-", "T6180C", "G6181T", "A6185T", "A6186C", "T6187G", "C6190A", "T6193C", "G6195C", "C6196A", "T6199C", "C6202A", "-6203A", "-6204G", "-6205C", "A6206T", "-6207C", "A6208T", "T6210A", "A6211T", "G6213T", "A6216T", "T6217G", "T6219G", "A6221G", "C6222A", "A6223T", "A6251G", "G6274A", "C6286T", "T6289G", "T6295C", "C6317A", "A6318C", "G6322T", "A6330G", "A6339C", "-6340A", "C6364A", "T6395A", "T6409C", "T6418C", "G6550A", "C6599A", "G6605A", "C6631T", "C6684G", "A6695C", "C6721T", "A6723T", "A6728C", "A6736C", "A6767G", "A6779G", "A6785T", "G6788A", "A6791G", "C6792T", "A6799T", "A6810G", "A6811C", "C6824T", "-6833A", "-6834A", "-6835T", "C6854G", "C6858A", "A6913G", "T6922C", "C6930T", "A6937T", "G6940A", "A6944C", "C6951A", "-6957T", "-6958C", "-6960C", "-6961A", "-6963A", "-6964T", "-6965A", "-6966C", "-6967A", "-6968A", "-6969G", "-6970C", "G6984C", "-6985A", "A6986G", "A6990C", "-6991A", "-6994C", "-6995G", "-6996G", "-6997G", "-6998A", "-6999G", "-7000G", "-7001T", "-7002G", "-7003T", "-7004A", "-7005A", "-7006T", "-7007A", "-7008A", "T7014C", "T7018C", "A7054G", "A7096G", "A7100C", "T7102G", "A7152G", "A7155G", "G7156C", "A7157G", "G7160A", "A7163G", "T7165G", "C7174T", "G7181A", "G7182C", "G7198A", "T7321C", "G7448C", "A7542G", "C7590A", "A7626T", "G7640A", "A7676G", "G7700A", "G7702T", "C7732G", "C7792T", "G7807A", "G7835A", "T7844A", "T7939C", "C7960A", "G7997A", "C8005A", "A8018G", "G8019A", "A8029G", "G8030A", "C8031G", "A8032T", "C8048T", "T8097C", "G8098A", "G8137T", "A8143G", "A8188G", "C8189T", "A8191G", "C8196T", "C8223T", "C8232G", "A8260C", "C8277T", "A8288T", "C8291A", "A8323T", "-8367A", "-8368G", "-8370A", "-8372A", "-8373G", "-8375G", "T8477C", "T8483C", "A8522C", "A8525G", "G8528A", "G8534T", "T8582C", "G8589C", "G8590A", "C8640A", "T8687C", "C8699A", "A8798T", "A8822G", "C8831T", "G8861T", "A8874G", "T8887G", "G8904T", "A8915G", "A8938G", "A8966T", "G8968A", "A8970G", "G8971A", "T8972C", "T8974G", "A8978C", "C8979A", "T8980A", "C9039T", "A9135G", "A9159-", "C9170A", "T9171G", "G9177T"], "INT": ["N39S", "V126L", "M154I"], "RT-p51": ["I173K", "I178M", "L283I", "A286T", "D291E", "V317T", "V326I"], "RT-p66": ["I173K", "I178M", "L283I", "A286T", "D291E", "V317T", "V326I", "V466I", "H483Y", "I505V", "E514D", "I556V"], "gp120": ["N4D", "D21E", "T35P", "V40I", "D50E", "E59A", "L97F", "D105N", "K107T", "N108S", "-112T", "-113N", "-114R", "-115S", "-116S", "-117N", "-118V", "-119M", "-120G", "-121D", "-122D", "M133V", "H145Q", "Q155T", "N159S", "S162T", "S181T", "L249I", "D251N", "K277R", "I281L", "Y290F", "T292P", "I305V", "K309E", "N311Y", "E312K", "K319S", "H324Y", "-328N", "Q334E", "P335Q", "T359I", "Q361N", "T366I", "-367T", "-368N", "-369T", "-371T", "-372D", "-373T", "-374S", "-375G", "-376R", "-377C", "-378N", "-379N", "I387T", "K414M", "N416Q", "-433S", "N434S", "N435A", "T436K", "T437E", "G443T"], "gp41": ["E49Q", "K80R", "A96N", "Y108F", "D113N", "S125G", "E133N", "V178I", "L181I", "D232N", "S239D", "A243S", "I264T", "L265S", "T298I", "T307I", "A310R", "A325V", "I329F", "L330I", "L340F"], "nef": ["E64D", "G83Q", "L100I", "E152D", "N169S", "R178G", "M182R", "A188S", "H199R"], "p1": ["K4R", "L5I"], "p17": ["R30K", "E42D", "I61L", "V82L", "T84V", "V107A", "T115A"], "p2": ["S5N", "Q8F"], "p24": ["L15V", "T110N", "P123A", "T178S", "S200T", "A204S"], "p6": ["S3N", "H35Q", "P38A", "S39V"], "p7": ["T50N"], "pro": ["L10V", "L19Q", "N37E", "L63S", "K70R", "M89I"], "rev": ["S31P", "R50K", "R53S", "E57G", "S61E", "T62S", "P67L", "D84N", "V97L", "R99G", "T114V", "K115E"], "tat": ["N12K", "I29K", "L36M", "I77T", "P84Q"], "vif": ["M29I", "Y30H", "V31I", "F39S", "S46N", "K63R", "H80Q", "R90K", "Y135F", "K151R", "Q178R", "R181K", "G182D", "E185G", "T188S"], "vpr": ["Y15F", "N16D", "N48E", "T49N", "E58K", "T63I"], "vpu": ["T2P", "P3L", "A5V", "I6V", "I13V", "V21A", "K31R", "K35Q", "R47A"]}, "labels": {"aa": "INT: N39S, V126L, M154I; RT-p51: I173K, I178M, L283I, A286T, D291E, V317T, V326I; RT-p66: I173K, I178M, L283I, A286T, D291E, V317T, V326I, V466I, H483Y, I505V, E514D, I556V; gp120: N4D, D21E, T35P, V40I, D50E, E59A, L97F, D105N, K107T, N108S, -112T, -113N, -114R, -115S, -116S, -117N, -118V, -119M, -120G, -121D, -122D, M133V, H145Q, Q155T, N159S, S162T, S181T, L249I, D251N, K277R, I281L, Y290F, T292P, I305V, K309E, N311Y, E312K, K319S, H324Y, -328N, Q334E, P335Q, T359I, Q361N, T366I, -367T, -368N, -369T, -371T, -372D, -373T, -374S, -375G, -376R, -377C, -378N, -379N, I387T, K414M, N416Q, -433S, N434S, N435A, T436K, T437E, G443T; gp41: E49Q, K80R, A96N, Y108F, D113N, S125G, E133N, V178I, L181I, D232N, S239D, A243S, I264T, L265S, T298I, T307I, A310R, A325V, I329F, L330I, L340F; nef: E64D, G83Q, L100I, E152D, N169S, R178G, M182R, A188S, H199R; p1: K4R, L5I; p17: R30K, E42D, I61L, V82L, T84V, V107A, T115A; p2: S5N, Q8F; p24: L15V, T110N, P123A, T178S, S200T, A204S; p6: S3N, H35Q, P38A, S39V; p7: T50N; pro: L10V, L19Q, N37E, L63S, K70R, M89I; rev: S31P, R50K, R53S, E57G, S61E, T62S, P67L, D84N, V97L, R99G, T114V, K115E; tat: N12K, I29K, L36M, I77T, P84Q; vif: M29I, Y30H, V31I, F39S, S46N, K63R, H80Q, R90K, Y135F, K151R, Q178R, R181K, G182D, E185G, T188S; vpr: Y15F, N16D, N48E, T49N, E58K, T63I; vpu: T2P, P3L, A5V, I6V, I13V, V21A, K31R, K35Q, R47A"}}}]}]}]}, {"name": "CRF01_AE_NODE_0000009", "node_attrs": {"div": 0.10945999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["-164G", "C426A", "C583T", "C4826A", "A6234G", "-6991C", "-6994T", "A7734G", "A8032T", "G8861A", "G8981A"], "gp120": ["Q155P", "D157E"], "p17": ["A83V"], "p6": ["S24L"], "vif": ["H80Q"]}, "labels": {"aa": "gp120: Q155P, D157E; p17: A83V; p6: S24L; vif: H80Q"}}, "children": [{"name": "JX447936", "node_attrs": {"div": 0.14434, "accession": "JX447936", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2005.0}, "Strain_name": {"value": "AA101a_WG1"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C287A", "T288C", "G424A", "C471G", "T485C", "A521G", "T531C", "A551T", "T572C", "A605G", "G614T", "A619G", "G629A", "T662G", "A664G", "C698T", "A991C", "A1002T", "A1017C", "A1025C", "T1100G", "G1127A", "T1175G", "G1253A", "G1268A", "A1277G", "G1298A", "A1301G", "T1335C", "C1385T", "G1452T", "A1494-", "A1495-", "A1496-", "G1498A", "A1499G", "T1501G", "T1502A", "-1503A", "-1504T", "-1505T", "A1525G", "A1718G", "-1745C", "-1753T", "T1756C", "G1766A", "A1783C", "T1784C", "A1846G", "C1985G", 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"A8531C", "G8588A", "G8666A", "A8688C", "C8715G", "A8812C", "C8813T", "G8848A", "A8873G", "T8903C", "G8904A", "A8942T", "C9018T"], "INT": ["R14K", "T21A", "I31V", "N39S", "Q95A", "L101V", "A124T", "V150A", "T206S", "M275V"], "RT-p51": ["I135T", "T165I", "I173V", "I178M", "V189I", "I244V", "V293I", "T386I", "K395R"], "RT-p66": ["I135T", "T165I", "I173V", "I178M", "V189I", "I244V", "V293I", "T386I", "K395R"], "gp120": ["D4N", "H57Y", "D105T", "-107D", "-109I", "-111N", "M133V", "L137I", "K141R", "K150V", "I153L", "N159T", "S161R", "R164M", "I197L", "K212G", "K224R", "S246T", "N251D", "S272E", "H280N", "-282G", "-283P", "P285Q", "G286V", "Q287F", "V288Y", "F289Y", "Y290R", "R291P", "T292G", "G293D", "D294V", "I305V", "G307R", "K309Q", "K315Q", "A318T", "K319N", "H324-", "N328-", "I332T", "Q334K", "L341P", "S365T", "-367C", "-368N", "-370S", "T385-", "T414Q", "V418I", "-433N", "T436G", "N437T", "G443A"], "gp41": ["S101N", "T102S", "E109D", "N113G", "N114S", "M115N", "T118R", "E133D", "P209H", "T210I", "H212P", "T270I", "D305N", "A310L", "A343S"], "nef": ["R21K", "Q35R", "V56I", "R59E", "E63D", "N116H", "Q125D", "N157T", "S169N", "A188S"], "p1": ["P7S", "S8P", "N9H"], "p17": ["K26R", "M31L", "L46I", "T53S", "S66P", "V82I", "H89Q", "S111N", "T122A"], "p2": ["Q6R", "-11A", "-12N"], "p24": ["N120G", "P123A", "V148T", "P160S", "N183Q"], "p6": ["I21T", "P24L", "-25L", "P49L"], "pro": ["L10V", "K70R"], "rev": ["A37T", "I55L", "L64V", "I109V", "T114A"], "tat": ["Q17R", "A21D", "S23N", "K29N", "I69V", "L74I", "P75S", "I77L", "G83D"], "vif": ["Y30H", "F39S", "L59I", "K63R", "Q80H", "Q91L", "D93E", "Q105K", "V128T", "R130S", "R131C", "N140S", "T154I", "R160K"], "vpr": ["A4T", "Y15H", "Y45H", "I84M", "N91H"], "vpu": ["T2S", "I28L", "R35K", "V43I", "E58D", "P76H", "V78I", "L82V"]}, "labels": {"aa": "INT: R14K, T21A, I31V, N39S, Q95A, L101V, A124T, V150A, T206S, M275V; RT-p51: I135T, T165I, I173V, I178M, V189I, I244V, V293I, T386I, K395R; RT-p66: I135T, T165I, I173V, I178M, V189I, I244V, V293I, T386I, K395R; gp120: D4N, H57Y, D105T, -107D, -109I, -111N, M133V, L137I, K141R, K150V, I153L, N159T, S161R, R164M, I197L, K212G, K224R, S246T, N251D, S272E, H280N, -282G, -283P, P285Q, G286V, Q287F, V288Y, F289Y, Y290R, R291P, T292G, G293D, D294V, I305V, G307R, K309Q, K315Q, A318T, K319N, H324-, N328-, I332T, Q334K, L341P, S365T, -367C, -368N, -370S, T385-, T414Q, V418I, -433N, T436G, N437T, G443A; gp41: S101N, T102S, E109D, N113G, N114S, M115N, T118R, E133D, P209H, T210I, H212P, T270I, D305N, A310L, A343S; nef: R21K, Q35R, V56I, R59E, E63D, N116H, Q125D, N157T, S169N, A188S; p1: P7S, S8P, N9H; p17: K26R, M31L, L46I, T53S, S66P, V82I, H89Q, S111N, T122A; p2: Q6R, -11A, -12N; p24: N120G, P123A, V148T, P160S, N183Q; p6: I21T, P24L, -25L, P49L; pro: L10V, K70R; rev: A37T, I55L, L64V, I109V, T114A; tat: Q17R, A21D, S23N, K29N, I69V, L74I, P75S, I77L, G83D; vif: Y30H, F39S, L59I, K63R, Q80H, Q91L, D93E, Q105K, V128T, R130S, R131C, N140S, T154I, R160K; vpr: A4T, Y15H, Y45H, I84M, N91H; vpu: T2S, I28L, R35K, V43I, E58D, P76H, V78I, L82V"}}}, {"name": "MG989569", "node_attrs": {"div": 0.14912999999999998, "accession": "MG989569", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2010.0}, "Strain_name": {"value": "2549844P000FL_Sc"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A389G", "A440G", "T571A", "A584C", "G592A", "G593C", "G607A", "G608A", "T635C", "T641C", "G650A", "G665A", "C668T", "A806G", "G821A", "C917T", "T936C", "A968C", "G978A", "A980G", "T992C", "T1001C", "C1060A", "C1115T", "A1142G", "T1143C", "C1214T", "C1220T", "C1247T", "G1253A", "A1301C", "T1316C", "C1385T", "G1394A", "T1403C", "G1443C", "C1444A", "C1446A", "A1447G", "A1448T", "A1450-", "T1451-", "G1452-", "C1453-", "A1454-", "A1455-", "A1456C", "T1457A", "-1458A", "-1459G", "-1460T", "A1499G", "C1535T", "A1567G", "A1586G", "G1589A", "G1619A", "A1670G", "G1732A", "A1738G", "-1745A", "-1749C", "-1753C", "G1760A", "A1780G", "A1783C", "T1796C", "A1841G", "C1865T", "T2266C", "A2275G", "G2311A", "C2335T", "C2464T", "A2566G", "G2578A", "C2596T", "C2605T", "T2671C", "G2681A", "A2699G", "C2749T", "C2797T", "G2828A", "G2878A", "A2929G", "T2935C", "G3004A", "C3006A", "A3029G", "A3043G", "A3145G", "C3178T", "A3238G", "A3292G", "T3303C", "G3304A", "T3380C", "G3398A", "C3475T", "G3508A", "T3535G", "G3538A", "A3574G", "G3772A", "A3835G", "T3853C", "A3886G", "A4183G", "C4258T", "G4283A", "C4357T", "A4384T", "T4450C", "C4471T", "A4531G", "C4652T", "A4696G", "T4712C", "C4724T", "T4776A", "C4820T", "A4865C", "G4870A", "C4925A", "A4951G", "T5028C", "A5056G", "T5072C", "G5137A", "C5215A", "A5238T", "C5250A", "T5292C", "A5302G", "A5355G", "G5427A", "T5439G", "A5499G", "T5582C", "T5602C", "T5695C", "G5699A", "A5704C", "A5720G", "A5781G", "A5803C", "T5884C", "A5916T", "A5945C", "G5954A", "A5955G", "G5956T", "A5957C", "G5965A", "T5986C", "C6023A", "C6025A", "G6085A", "A6159G", "-6170G", "T6171C", "-6175A", "A6176G", "A6177G", "-6180C", "T6181A", "C6186G", "C6189A", "A6192G", "A6195C", "C6196-", "A6197-", "T6199-", "A6200-", "C6202-", "A6206-", "A6209-", "T6210-", "G6211-", "G6212-", "T6213-", "A6214-", "A6215-", "A6216-", "T6217-", "G6218-", "T6219-", "A6220-", "A6221-", "C6222-", "A6223-", "G6224-", "A6225-", "-6226A", "G6230A", "T6242A", "T6250C", "T6287C", "T6310C", "A6326G", "T6328G", "A6339G", "G6392A", "T6436G", "G6442A", "A6448T", "A6471C", "C6477T", "A6478G", "G6503A", "C6586T", "C6599A", "C6618A", "G6647A", "A6648C", "T6668A", "C6673T", "A6686-", "G6687-", "A6692G", "A6695G", "-6698C", "-6700T", "G6726A", "G6750A", "A6754C", "G6802A", "A6810G", "T6815C", "C6862T", "T6863G", "A6880G", "A6934G", "A6935C", "-6955G", "-6956G", "-6957G", "-6958A", "-6959A", "-6961T", "-6962G", "-6963A", "-6964A", "-6966C", "-6967C", "-6968A", "-6969T", "-6970G", "-6971A", "-6972G", "-6973T", "-6974A", "-6975A", "-6976T", "-6978A", "A6989-", "A6992C", "C6993A", "-6995G", "-6996G", "-6997A", "-6998G", "-6999G", "-7000G", "-7001A", "-7002A", "-7003T", "-7004G", "-7005G", "-7006C", "-7007A", "-7008C", "C7095G", "A7096C", "A7123G", "C7127T", "A7151G", "A7152G", "T7153G", "C7164A", "C7165T", "G7195A", "C7201T", "A7256G", "G7276A", "G7291T", "C7463T", "G7589A", "C7590A", "T7618C", "C7684T", "G7700A", "A7701C", "C7732T", "A7753G", "T7774C", "C7792T", "T7801A", "T7843C", "T7852G", "A7962G", "C7984A", "G7992A", "C8009A", "A8023G", "A8069C", "G8070T", "G8136T", "G8137T", "T8167C", "T8171C", "G8180A", "C8189T", "G8212C", "C8213T", "T8214A", "T8218C", "G8234A", "T8235C", "G8239A", "G8241A", "G8242T", "C8268T", "C8311T", "C8336G", "G8388A", "T8411C", "A8429G", "T8505A", "T8567C", "C8568T", "T8608A", "A8809C", "G8818A", "T8835C", "G8864T", "C8867T", "T8896A", "G8914T", "T8923G", "G8982A", "C9023T"], "INT": ["E170K"], "RT-p51": ["G196R", "I202V", "E245K", "A304E", "T312A", "M403T", "V435I"], "RT-p66": ["G196R", "I202V", "E245K", "A304E", "T312A", "M403T", "V435I", "H480Q"], "gp120": ["D21V", "K31Q", "E34S", "T35P", "H57K", "N102S", "-107T", "-109S", "V126I", "S130T", "Y145H", "N158E", "V180I", "L198F", "N206T", "T208M", "V217I", "L249I", "T255N", "E265T", "S272N", "S278G", "I279V", "R291K", "D294E", "R299K", "K300N", "K319R", "S337A", "K361Q", "-367W", "-368G", "-370E", "-372M", "-375E", "-384N", "T414S", "-433G", "T436D", "M447I", "I468V", "E479D"], "gp41": ["A96N", "S101T", "E133T", "N166K", "E220G", "G230D", "S256L", "G278V", "G293S", "L303F", "L304Y", "V311T", "G313D", "A322V", "L345V"], "nef": ["V16I", "C55S", "E65D", "F89Y", "Q125H", "D156A", "G159E", "E174D", "F185Y", "A188G", "R191L", "I194R"], "p17": ["F79Y", "W86Y", "R91K"], "p2": ["A7Q", "Q8S", "N9T", "-10S"], "p24": ["E79D", "V83M", "T110N", "N120S"], "p6": ["G18E", "E19-", "I21G", "T22I", "S23T", "-25S", "-26L", "E34G", "H35P"], "p7": ["K34R"], "pro": ["I15V"], "rev": ["Y23H", "A54E", "I59V", "T62A", "Q74P", "V97L", "S107P", "V108A", "G111E", "T114I"], "tat": ["A21E", "I69T", "K85E"], "vif": ["K37R", "L64I", "S95N", "D113E", "K122R", "K157R", "R184K"], "vpr": ["Y45F", "T49N", "I63T", "I84V"], "vpu": ["Y30L", "R31K", "I33L", "K38R", "K66Q"]}, "labels": {"aa": "INT: E170K; RT-p51: G196R, I202V, E245K, A304E, T312A, M403T, V435I; RT-p66: G196R, I202V, E245K, A304E, T312A, M403T, V435I, H480Q; gp120: D21V, K31Q, E34S, T35P, H57K, N102S, -107T, -109S, V126I, S130T, Y145H, N158E, V180I, L198F, N206T, T208M, V217I, L249I, T255N, E265T, S272N, S278G, I279V, R291K, D294E, R299K, K300N, K319R, S337A, K361Q, -367W, -368G, -370E, -372M, -375E, -384N, T414S, -433G, T436D, M447I, I468V, E479D; gp41: A96N, S101T, E133T, N166K, E220G, G230D, S256L, G278V, G293S, L303F, L304Y, V311T, G313D, A322V, L345V; nef: V16I, C55S, E65D, F89Y, Q125H, D156A, G159E, E174D, F185Y, A188G, R191L, I194R; p17: F79Y, W86Y, R91K; p2: A7Q, Q8S, N9T, -10S; p24: E79D, V83M, T110N, N120S; p6: G18E, E19-, I21G, T22I, S23T, -25S, -26L, E34G, H35P; p7: K34R; pro: I15V; rev: Y23H, A54E, I59V, T62A, Q74P, V97L, S107P, V108A, G111E, T114I; tat: A21E, I69T, K85E; vif: K37R, L64I, S95N, D113E, K122R, K157R, R184K; vpr: Y45F, T49N, I63T, I84V; vpu: Y30L, R31K, I33L, K38R, K66Q"}}}]}, {"name": "CRF01_AE_NODE_0000014", "node_attrs": {"div": 0.11489999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A96T", "A98T", "A1743-", "A1754-", "C1985T", "G4268A", "G5385A", "T6166C", "-6205G", "C7463A", "C8182A", "G8239A", "T8675C", "A8861G", "A8947T"], "INT": ["V165I"], "gp120": ["-123T", "M133I"], "nef": ["Y202F"], "p6": ["S23-", "H35Q"], "pro": ["L63S"], "rev": ["P112T"], "vpr": ["G94S"]}, "labels": {"aa": "INT: V165I; gp120: -123T, M133I; nef: Y202F; p6: S23-, H35Q; pro: L63S; rev: P112T; vpr: G94S"}}, "children": [{"name": "CRF01_AE_NODE_0000015", "node_attrs": {"div": 0.12, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T506C", "T531C", "G615A", "T662G", "C897T", "G1498A", "G1673A", "G1794A", "C1826G", "G1845A", "G1969A", "G2530A", "A2566G", "A2592G", "C2644T", "C3542T", "G3685A", "G4267A", "T4702C", "C4728A", "C4761A", "C6067A", "T6171-", "T6178-", "C6190-", "A6192-", "T6193-", "A6194-", "A6195-", "C6196-", "A6197-", "T6199-", "A6200-", "C6202-", "T6213C", "A6215C", "A6216T", "T6217G", "T6219A", "-6226A", "T6295C", "T6460G", "G6693A", "G6716T", "T6717C", "T6724C", "G6726A", "A6819G", "-6833A", "-6834A", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964A", "-6965A", "-6966C", "A7158C", "C7238G", "A7534G", "A7735G", "C7929T", "C8037T", "G8105A", "A8130G", "C8277T", "G8375A", "G8404A", "G8537A", "A8584T", "T8786G", "A8812C", "A8837G"], "RT-p51": ["K166R"], "RT-p66": ["K166R", "H483Y"], "gp120": ["N71K", "A106-", "K127R", "D202E", "K322R", "-370G", "-380T", "Q462E"], "gp41": ["K144R", "P209L", "A245V", "A268T", "R277S", "A325V"], "nef": ["R21K", "Y81F", "N157T"], "p17": ["S66P", "V94I", "N109K"], "p6": ["V39I"], "p7": ["R11K"], "pro": ["L10V", "G16E"], "rev": ["S86N"], "vif": ["F39S", "H48N", "L59I"]}, "labels": {"aa": "RT-p51: K166R; RT-p66: K166R, H483Y; gp120: N71K, A106-, K127R, D202E, K322R, -370G, -380T, Q462E; gp41: K144R, P209L, A245V, A268T, R277S, A325V; nef: R21K, Y81F, N157T; p17: S66P, V94I, N109K; p6: V39I; p7: R11K; pro: L10V, G16E; rev: S86N; vif: F39S, H48N, L59I"}}, "children": [{"name": "JN248330", "node_attrs": {"div": 0.15398, "accession": "JN248330", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04TH613543"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "T422C", "A461T", "C471G", "C558G", "G579A", "T641C", "A645C", "C688A", "G690A", "G693A", "G709A", "C723T", "A725C", "G762A", "G810A", "C917T", "A926C", "G977A", "C1060A", "C1062A", "A1079G", "T1181C", "A1208G", "C1220A", "G1253A", "A1359T", "T1362C", "T1403A", "C1444T", "A1456C", "A1499G", "C1523T", "A1525G", "C1535T", "C1541T", "T1574C", "A1657G", "A1701T", "A1740G", "C1744-", "C1750-", "C1751-", "T1752-", 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"-6980G", "-6981C", "-6982T", "-6983G", "-6984T", "-6985G", "-6986A", "-6987A", "-6988T", "A6989G", "A6990G", "T7009-", "A7013T", "A7015T", "T7090G", "A7108C", "A7149C", "T7156A", "G7160A", "A7163-", "C7164-", "C7165-", "G7182A", "A7183G", "A7190G", "G7269A", "G7291A", "G7366A", "G7441A", "G7456A", "G7508A", "A7570T", "A7574G", "T7604C", "C7605G", "A7626T", "G7631C", "G7658C", "G7666A", "C7691A", "A7692T", "G7717A", "A7721G", "T7747G", "G7750A", "A7753G", "G7790A", "A7862G", "T7936C", "T7939C", "A7964G", "A8029G", "G8030A", "C8033A", "T8047C", "A8050G", "A8076G", "C8092A", "A8093C", "A8173G", "T8196C", "C8223T", "A8236T", "T8265C", "T8279G", "A8308G", "C8311T", "G8329A", "G8330A", "C8331G", "T8371A", "A8420G", "G8439A", "G8506C", "A8517G", "G8518A", "A8531T", "G8588A", "T8636A", "A8657G", "G8666A", "C8699A", "T8701A", "C8789T", "C8790G", "A8874G", "G8904A", "C8905G", "A8915T", "A8938G", "T8939C", "T8972A", "A8981G", "C9039T"], "INT": ["I31V", "L45V", "R136Q", "I234V"], "RT-p51": ["K11T", "V106I", "I142V", "S211K", "V276I", "A286T", "E297D", "K311R", "Y342F", "T369A", "A376V", "K395R", "M403T"], "RT-p66": ["K11T", "V106I", "I142V", "S211K", "V276I", "A286T", "E297D", "K311R", "Y342F", "T369A", "A376V", "K395R", "M403T", "H480Q", "Q547K"], "gp120": ["N5K", "D21E", "V40I", "I56M", "-106D", "-107I", "N108K", "-109V", "T110N", "-111A", "-112T", "-124E", "V126I", "S130T", "Y145H", "I153L", "P155Q", "N158E", "N159H", "S161I", "K179R", "K212N", "E241D", "L249I", "N251D", "K262V", "T277K", "H280N", "Q287R", "V288A", "F289G", "Y290D", "R291I", "T292I", "G296-", "D297-", "I298-", "E304A", "-327N", "P336H", "L341P", "I343V", "M345T", "K361Q", "S365G", "-367Y", "-368M", "-372V", "-373I", "-374N", "-375E", "-376A", "-377V", "-378N", "-379G", "T385-", "I387F", "S412R", "N432T", "N435T", "G443E", "N446D", "R472K"], "gp41": ["V69I", "I91V", "S101R", "Y108F", "E110Q", "E119Q", "Q130I", "N140D", "D148E", "D163N", "I187V", "R221G", "A243T", "L244I", "H258R", "F263L", "I264L", "I298T", "T307I", "V321A", "W326G", "A343S"], "nef": ["I10K", "V33I", "C55S", "R59E", "E63D", "D98E", "F120Y", "P150A", "R178G", "A188S", "H199R"], "p1": ["N9S"], "p17": ["V7I", "E42D", "L46V", "L75V", "V82I", "I104L", "A118E", "A119T", "A120T", "S125N", "Q130Y"], "p2": ["A7V", "N9H", "-11A", "-12T"], "p24": ["V11I", "V27I", "T110N", "L111I", "D163E", "T210S"], "p6": ["T8S", "I21V", "T22L", "-23K", "P24Q", "-25E", "-26Q", "Q28D", "E29P", "Q30P", "K31P", "D32-", "K33-", "E34-", "Q35-", "P36-", "L38A"], "p7": ["K20R"], "pro": ["T12P", "S63C"], "rev": ["R17G", "S30P", "S31P", "K39R", "S61D", "T62D", "S67P", "T68A", "H82T", "I109V"], "tat": ["I45L", "K63R", "N67D", "P68L", "I76T", "I77T"], "vif": ["R19K", "L24I", "M29I", "V31I", "K37N", "R92K", "N93K", "K122R", "R131H", "K179Q"], "vpr": ["E6A", "P37S", "I63M", "V70I"], "vpu": ["S7A", "I9V", "A27V", "Y30I", "I33L", "Q36E", "D40E", "R41K", "K66Q"]}, "labels": {"aa": "INT: I31V, L45V, R136Q, I234V; RT-p51: K11T, V106I, I142V, S211K, V276I, A286T, E297D, K311R, Y342F, T369A, A376V, K395R, M403T; RT-p66: K11T, V106I, I142V, S211K, V276I, A286T, E297D, K311R, Y342F, T369A, A376V, K395R, M403T, H480Q, Q547K; gp120: N5K, D21E, V40I, I56M, -106D, -107I, N108K, -109V, T110N, -111A, -112T, -124E, V126I, S130T, Y145H, I153L, P155Q, N158E, N159H, S161I, K179R, K212N, E241D, L249I, N251D, K262V, T277K, H280N, Q287R, V288A, F289G, Y290D, R291I, T292I, G296-, D297-, I298-, E304A, -327N, P336H, L341P, I343V, M345T, K361Q, S365G, -367Y, -368M, -372V, -373I, -374N, -375E, -376A, -377V, -378N, -379G, T385-, I387F, S412R, N432T, N435T, G443E, N446D, R472K; gp41: V69I, I91V, S101R, Y108F, E110Q, E119Q, Q130I, N140D, D148E, D163N, I187V, R221G, A243T, L244I, H258R, F263L, I264L, I298T, T307I, V321A, W326G, A343S; nef: I10K, V33I, C55S, R59E, E63D, D98E, F120Y, P150A, R178G, A188S, H199R; p1: N9S; p17: V7I, E42D, L46V, L75V, V82I, I104L, A118E, A119T, A120T, S125N, Q130Y; p2: A7V, N9H, -11A, -12T; p24: V11I, V27I, T110N, L111I, D163E, T210S; p6: T8S, I21V, T22L, -23K, P24Q, -25E, -26Q, Q28D, E29P, Q30P, K31P, D32-, K33-, E34-, Q35-, P36-, L38A; p7: K20R; pro: T12P, S63C; rev: R17G, S30P, S31P, K39R, S61D, T62D, S67P, T68A, H82T, I109V; tat: I45L, K63R, N67D, P68L, I76T, I77T; vif: R19K, L24I, M29I, V31I, K37N, R92K, N93K, K122R, R131H, K179Q; vpr: E6A, P37S, I63M, V70I; vpu: S7A, I9V, A27V, Y30I, I33L, Q36E, D40E, R41K, K66Q"}}}, {"name": "JX112844", "node_attrs": {"div": 0.15221, "accession": "JX112844", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "GZ070126"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T107-", "A157T", "A159T", "C160A", "T161A", "A163T", "G164A", "T165-", "C287A", "T288C", "-304T", "G395A", "G424A", "G458A", "G495T", "A512G", "A516C", "C558T", "A562G", "T571A", "T583C", "C587T", "G597A", "G607A", "G614A", "T641A", "G654A", "A699C", "C710T", "C713-", "A714-", "A715-", "A716-", "G717-", "T718-", "T782C", "A941G", "A1049G", "C1061T", "T1064C", "A1160G", "C1211T", "G1232A", "A1277G", "G1313A", "A1350T", "G1353C", "G1354A", "A1412G", "A1415G", "G1424A", "G1430A", "T1451G", "G1452A", "A1492C", "A1495G", "C1514T", "A1529T", "T1547C", "A1562G", "A1580G", "A1586G", "C1615T", "G1661A", "A1670G", "C1692T", "C1693T", "G1697A", "A1709G", "A1742G", "-1743A", "-1745C", "-1749C", "-1753C", "-1754A", "C1767A", "T1784G", "A1839G", "C1960T", "G1963A", "T1985A", "T1986A", "A2002G", "A2075C", "C2095T", "G2117A", "C2199T", "A2212G", "C2335T", "C2503T", "C2533T", "A2557G", "G2578A", "A2617G", "A2629G", "G2630A", "G2693A", "C2694T", "C2857A", "G2914A", "A2915G", "G2920A", "A3142G", "A3145G", "A3268G", "G3307C", "C3359T", "G3435A", "G3448A", "A3454G", "G3463A", "G3473A", "T3505A", "G3523A", "T3526A", "G3644C", "C3649A", "C3712T", "G3718A", "G3766A", "T3865C", "C3892T", "G3952A", "T3967C", "A4021G", "T4126C", "T4216C", "G4237A", "G4243A", "G4335A", "A4336G", "G4354A", "C4501T", "A4650C", "C4679T", "G4727A", "T4754A", "A4774G", "G4779A", "A4806C", "C4844A", "A4865C", "G4870T", "C4871T", "A4900G", "C4925T", "A4976T", "A4988C", "G5030A", "G5059A", "T5072C", "G5131A", "A5148T", "A5154G", "C5215T", "C5222T", "G5236A", "G5267A", "A5301T", "A5302C", "C5398T", "G5403A", "C5406T", "T5412G", "A5431T", "C5438A", "T5439A", "T5467G", "G5468T", "T5515C", "T5568C", "A5581G", "C5641T", "G5668A", "G5673A", "G5699A", "C5707T", "A5722G", "C5727T", "G5734A", "C5802T", "G5824A", "G5864A", "C5924T", "C6004T", "C6023T", "A6024T", "G6028A", "G6121A", "C6140T", "T6142C", "A6157G", "G6167A", "A6173-", "A6176-", "A6177-", "G6179-", "T6181-", "A6182-", "C6183-", "T6184-", "A6185-", "C6186-", "T6187-", "A6188-", "C6189-", "A6191-", "A6206C", "-6207T", "G6212T", "A6220G", "C6222A", "A6225C", "A6232G", "C6238T", "A6251G", "C6263A", "A6273G", "C6278A", "A6279C", "G6280T", "T6285C", "T6322A", "G6323A", "A6325T", "A6327G", "A6329G", "A6333G", "T6337C", "T6358C", "T6364C", "A6425G", "C6441T", "G6463A", "A6471C", "C6483A", "C6548T", "A6574G", "C6586T", "C6652T", "C6667T", "C6673T", "A6692C", "G6743A", "A6752C", "G6788A", "A6790G", "A6812G", "G6821A", "-6835T", "T6838G", "A6840C", "G6841A", "C6843A", "A6937C", "T6946C", "-6954G", "-6955G", "-6956G", "-6957A", "-6958A", "A6989-", "A6990-", "T6994G", "-6995G", "-6996A", "-6997G", "-6998G", "-6999G", "-7000T", "-7001A", "-7002A", "-7003T", "-7004G", "-7005G", "-7006C", "-7007A", "-7008C", "T7009C", "G7132A", "A7148T", "C7155A", "A7157G", "T7159G", "C7164A", "G7195A", "A7339G", "T7466C", "C7541A", "T7636A", "G7702A", "A7765G", "A7782C", "C7792T", "T7801C", "T7864C", "G7873A", "T7912C", "C7984A", "A7996C", "A8002G", "A8014T", "G8019A", "G8032A", "C8038G", "T8155C", "T8171A", "T8200C", "A8204G", "G8219A", "G8234A", "C8268T", "A8273G", "G8274T", "A8305G", "G8317A", "A8426G", "C8451T", "G8469A", "G8486A", "A8558G", "T8585C", "T8594G", "T8690C", "A8739G", "C8741T", "C8790A", "A8795T", "T8800C", "G8852A", "G8864T", "T8935A", "G8983A", "T9078C", "A9135G"], "INT": ["M154I", "R187K"], "RT-p51": ["V8I", "T35I", "I178M", "V179I", "A200I", "I274V", "E404D"], "RT-p66": ["V8I", "T35I", "I178M", "V179I", "A200I", "I274V", "E404D", "S447N", "D460N", "V517L"], "gp120": ["D4N", "H57F", "P96S", "D105N", "N108-", "T110-", "I133V", "L137I", "K140R", "Q142T", "V144A", "E157N", "N158S", "N159D", "N160S", "S162N", "T191A", "A196V", "N206T", "P210Q", "V288S", "R291K", "D297N", "K300Q", "E312K", "K319E", "K320E", "E323K", "K361N", "-367W", "-368E", "-381E", "-382G", "-383N", "-384G", "N432Y", "-433N", "N435A", "T436D", "M447I"], "gp41": ["Q80K", "N160T", "R231S", "L237F", "S239N", "L290I", "I301V", "A306T", "V311I", "A322V", "R324V"], "nef": ["V43I", "M48I", "I133V", "P150T", "R151S", "V153A", "E174D", "L198Q"], "p17": ["R30K", "A54S", "I61L", "L75F", "K76R", "F79Y", "V83A", "V88I", "R91K", "D102E", "V107I", "T122P", "K127-", "V128-"], "p2": ["Q8T"], "p24": ["T207S", "G208Q"], "p6": ["P5L", "I21M", "-25S", "-26L", "Q30K"], "p7": ["Q9P", "K10R", "E21D", "T50I"], "pro": ["K14R", "S63N", "I93L"], "rev": ["I18T", "I52V", "S56C", "L64V", "S103P", "V108D"], "tat": ["N12K", "T19S", "A21E", "C31V", "Y47H", "I69V"], "vif": ["N22H", "H56Q", "K63R", "V65I", "T74P", "S95I", "Q105R", "R130S", "E134D", "R158K", "G182D", "T188S", "N190D"], "vpr": ["Y15F", "E17G", "H40Y", "E55K", "Q66L"], "vpu": ["V21I", "Y30F", "R31K", "I39V", "V43I", "D73N"]}, "labels": {"aa": "INT: M154I, R187K; RT-p51: V8I, T35I, I178M, V179I, A200I, I274V, E404D; RT-p66: V8I, T35I, I178M, V179I, A200I, I274V, E404D, S447N, D460N, V517L; gp120: D4N, H57F, P96S, D105N, N108-, T110-, I133V, L137I, K140R, Q142T, V144A, E157N, N158S, N159D, N160S, S162N, T191A, A196V, N206T, P210Q, V288S, R291K, D297N, K300Q, E312K, K319E, K320E, E323K, K361N, -367W, -368E, -381E, -382G, -383N, -384G, N432Y, -433N, N435A, T436D, M447I; gp41: Q80K, N160T, R231S, L237F, S239N, L290I, I301V, A306T, V311I, A322V, R324V; nef: V43I, M48I, I133V, P150T, R151S, V153A, E174D, L198Q; p17: R30K, A54S, I61L, L75F, K76R, F79Y, V83A, V88I, R91K, D102E, V107I, T122P, K127-, V128-; p2: Q8T; p24: T207S, G208Q; p6: P5L, I21M, -25S, -26L, Q30K; p7: Q9P, K10R, E21D, T50I; pro: K14R, S63N, I93L; rev: I18T, I52V, S56C, L64V, S103P, V108D; tat: N12K, T19S, A21E, C31V, Y47H, I69V; vif: N22H, H56Q, K63R, V65I, T74P, S95I, Q105R, R130S, E134D, R158K, G182D, T188S, N190D; vpr: Y15F, E17G, H40Y, E55K, Q66L; vpu: V21I, Y30F, R31K, I39V, V43I, D73N"}}}]}, {"name": "CRF01_AE_NODE_0000016", "node_attrs": {"div": 0.12038999999999998, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C467T", "A605G", "G614T", "G709A", "G1452A", "C1853T", "T1986C", "G2222A", "G2293A", "A2362G", "G2380A", "C2715A", "G2869A", "G3001A", "G3538A", "G3667A", "G3766A", "G4182A", "G4243A", "A4650C", "A4865C", "A4900G", "C5006T", "T5091C", "G5123A", "A5817G", "G5956T", "-6170T", "-6172G", "-6203A", "G6218A", "-6226T", "G6284T", "A6339G", "T6466A", "C6631A", "A6779G", "C6824T", "C6861A", "A6950-", "C6951-", "T6952-", "T6953-", "-7004G", "-7005A", "-7006C", "-7008C", "C7059T", "A7152G", "G7441A", "G7456A", "T7604A", "G7790A", "C7932T", "A8011C", "G8180A", "C8213T", "C8268T", "G8349A", "C8514T", "T8603C", "T8690C", "G8888A"], "INT": ["R136Q"], "RT-p51": ["E43K"], "RT-p66": ["E43K"], "gp120": ["E34D", "V144F", "N204K", "H259Q", "H280R", "K309E", "H324Y", "P336H", "-384D", "A402V"], "gp41": ["S101T", "D163N", "T210I", "G293S", "L304F", "A322V"], "nef": ["M182I"], "p17": ["E93D"], "rev": ["I55L"], "tat": ["P75S"], "vif": ["N22H", "Q105R"], "vpr": ["D7N"]}, "labels": {"aa": "INT: R136Q; RT-p51: E43K; RT-p66: E43K; gp120: E34D, V144F, N204K, H259Q, H280R, K309E, H324Y, P336H, -384D, A402V; gp41: S101T, D163N, T210I, G293S, L304F, A322V; nef: M182I; p17: E93D; rev: I55L; tat: P75S; vif: N22H, Q105R; vpr: D7N"}}, "children": [{"name": "JX112818", "node_attrs": {"div": 0.15797999999999998, "accession": "JX112818", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "FJ070043"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T107G", "-166A", "T213C", "T214G", "A215G", "T217A", "G285T", "A303T", "A319T", "A334-", "G361C", "G413T", "T422C", "T596C", "A599G", "A645T", "T695C", "G696A", "C698A", "A708G", "T734A", "G762A", "T763C", "C771T", "A905C", "C917T", "C1013T", "A1067G", "A1090G", "C1098G", "T1100C", "A1157G", "G1192A", "G1199A", "C1214T", "G1253A", "G1268A", "C1280T", "G1313A", "A1337G", "A1367G", "A1397G", "A1455G", "A1456C", "A1464C", "T1481C", "A1526G", "A1644C", "A1656C", "C1692A", "A1719G", "G1732A", "G1734A", "A1742G", "-1743G", "-1745C", "-1749C", "-1753T", "-1754G", "A1781C", "C1782T", "A1783G", "T1792C", "C1826A", "A1841G", "A1962G", "G1969A", "T1985G", "A2056G", "A2089G", "A2127C", "A2210G", "A2230G", "T2392C", "G2463A", "C2533T", "C2584T", "A2592G", "A2593G", "T2606-", "A2612C", "A2616G", "C2694A", "G2714A", "T2716A", "A2734G", "T2737C", "G2755A", "T2770C", "C2885T", "A2918C", "A2925G", "C2968A", "A2969G", "G3004A", "G3010A", "T3034G", "A3096C", "G3097A", "C3100T", "C3160A", "G3173A", "C3180A", "A3195T", "A3200G", "T3207C", "G3208A", "G3264A", "A3293T", "C3294T", "T3303C", "T3346C", "T3349C", "C3352T", "T3433C", "G3435A", "C3449T", "C3504A", "G3508A", "G3553A", "C3554A", "A3607G", "A3637G", "C3692T", "T3779C", "T3799C", "A3891G", "G3989A", "T4039C", "A4057G", "C4076A", "G4078A", "T4085C", "A4094C", "T4126C", "G4195A", "T4234C", "G4276T", "A4333G", "A4498G", "G4582A", "G4673A", "T4674C", "G4677A", "T4701G", "T4703C", "G4723A", "G4736A", "C4752T", "T4754C", "A4814G", "G4817A", "A4826C", "C4871A", "C4902T", "G4978C", "C4992T", "A5058G", "A5127G", "A5142C", "A5155G", "G5179T", "A5210G", "C5221T", "A5246T", "A5291G", "T5293G", "G5312A", "A5345G", "C5438A", "G5444A", "G5448T", "C5454T", "C5482A", "A5499G", "G5545A", "A5563G", "T5568C", "A5594G", "G5599A", "T5602A", "A5611T", "G5619A", "G5620C", "A5632G", "T5696A", "G5700A", "G5712A", "C5713G", "C5727A", "G5747C", "A5784G", "C5802T", "A5825G", "A5848G", "T5851C", "C5958T", "A6044C", "T6049C", "G6121A", "G6133A", "G6167A", "-6174C", "-6175C", "-6180C", "T6181C", "A6185T", "C6186G", "T6187G", "A6195T", "-6198A", "-6201G", "C6202T", "-6204C", "G6205A", "A6206G", "-6207A", "A6208T", "A6209T", "G6211A", "T6213G", "A6229C", "G6230A", "A6251G", "C6263A", "A6273G", "G6290T", "C6293A", "A6303G", "T6337A", "T6355C", "A6362T", "G6391A", "T6395A", "T6412C", "T6509C", "C6548T", "A6605G", "C6618T", "A6639G", "A6682G", "T6694G", "-6697T", "A6703-", "G6732C", "A6734G", "T6735A", "A6736G", "A6752C", "A6753G", "G6764A", "A6765G", "G6773A", "G6774A", "G6788A", "T6794C", "G6823A", "-6833A", "-6834A", "-6835T", "A6848G", "T6874C", "T6876C", "T6883A", "A6905G", "A6945G", "T6946C", "-6977G", "-6978C", "-6979A", "-6980G", "-6981C", "-6982A", "-6983G", "-6984A", "-6985A", "-6986A", "-6987A", "-6988T", "-7007C", "G7033A", "A7040G", "C7095G", "A7096C", "G7106A", "T7107C", "A7135G", "T7156A", "G7160A", "C7165T", "G7182C", "A7231G", "C7238G", "A7282G", "A7322C", "A7348C", "A7373C", "A7420G", "A7552C", "T7609C", "A7620G", "A7626T", "A7688C", "G7734A", "G7807A", "A7862G", "G7885A", "A7964G", "C7969A", "G7977A", "G8008A", "G8032T", "C8037T", "C8038T", "A8093G", "G8105A", "C8131G", "T8171G", "T8172C", "G8181C", "T8196C", "G8219A", "A8228G", "G8281C", "C8287T", "A8288G", "G8335A", "T8337A", "G8350A", "G8388A", "A8407G", "A8409G", "A8423G", "A8429G", "A8446G", "G8516A", "G8555A", "T8567C", "G8588A", "A8617G", "A8643G", "A8688C", "T8711C", "A8717G", "A8726G", "G8738A", "T8756C", "C8789T", "C8790G", "C8791A", "A8793G", "G8794C", "A8809C", "A8814C", "A8847C", "G8848A", "T8855C", "T8939C", "C8960A", "A8969G", "T8980C", "G8983A", "A9026G", "C9068T", "T9084G", "G9085A", "C9108-", "-9109T", "A9144G"], "INT": ["N39S", "V72I", "L101I", "E167D"], "RT-p51": ["K11T", "K39E", "S123N", "K166R", "F171-"], "RT-p66": ["K11T", "K39E", "S123N", "K166R", "F171-"], "gp120": ["T35I", "N64H", "D105N", "A106L", "-107T", "-109A", "-111W", "-112T", "-113N", "-114I", "-115N", "-116S", "-117T", "-118D", "-119L", "-120G", "-121N", "-122I", "-124D", "E125D", "V126I", "K127R", "I133V", "L137I", "K140R", "A146S", "L147I", "K150R", "S161R", "T170S", "S181T", "C219R", "N251D", "T255I", "K262R", "G293A", "D294E", "K300R", "E304R", "G307K", "E312K", "K319E", "-327N", "I332V", "L341P", "R351G", "N364S", "T366A", "-367A", "-368E", "-370N", "T385P", "I396V", "T414S", "V418T", "-433S", "N434T", "T436N", "N437T", "G443A", "Q462E"], "gp41": ["M7L", "I24L", "K106R", "Y108F", "N129H", "I187V", "R221G", "G225E", "A245V", "I264V", "A268T", "L290A", "S293T", "I298T", "A306T", "I309V", "W326C", "I329V", "L345Q"], "nef": ["G3N", "V16I", "Q22R", "T23A", "Q35R", "K92R", "I101V", "N116H", "P150E", "R151A", "D156A", "K158Q", "S169H", "C206*"], "p1": ["I5L", "N9H"], "p17": ["S9T", "K26N", "I104L", "G121R", "S125D"], "p2": ["N9H", "-10T", "-11A", "M14L"], "p24": ["V11T", "P14S", "N120S", "P123A", "R154K"], "p6": ["P5T", "N14D", "G18E", "E19K", "I21M", "T22A", "-25L", "-26L", "E34D", "Q35C", "L38S"], "pro": ["L10I", "I15V", "K55R", "S63A"], "rev": ["I18T", "K39R", "A54T", "T62S", "H82R", "S86N", "Q95E", "V108G", "G111D"], "tat": ["A21D", "S23N", "K24N", "L36I", "G57R", "K63E", "S87*"], "vif": ["M29I", "Y30H", "V31I", "F39V", "S46N", "H56Y", "Q80H", "S95R", "R131P", "P136S", "R158G", "R181G", "N186H", "N190S"], "vpr": ["Q8R", "E13A", "E25D", "R36G", "N48Y", "I63V", "V70I"], "vpu": ["T2S", "E5Q", "I9V", "Q36E", "D40E", "R47T", "D73G", "N81D"]}, "labels": {"aa": "INT: N39S, V72I, L101I, E167D; RT-p51: K11T, K39E, S123N, K166R, F171-; RT-p66: K11T, K39E, S123N, K166R, F171-; gp120: T35I, N64H, D105N, A106L, -107T, -109A, -111W, -112T, -113N, -114I, -115N, -116S, -117T, -118D, -119L, -120G, -121N, -122I, -124D, E125D, V126I, K127R, I133V, L137I, K140R, A146S, L147I, K150R, S161R, T170S, S181T, C219R, N251D, T255I, K262R, G293A, D294E, K300R, E304R, G307K, E312K, K319E, -327N, I332V, L341P, R351G, N364S, T366A, -367A, -368E, -370N, T385P, I396V, T414S, V418T, -433S, N434T, T436N, N437T, G443A, Q462E; gp41: M7L, I24L, K106R, Y108F, N129H, I187V, R221G, G225E, A245V, I264V, A268T, L290A, S293T, I298T, A306T, I309V, W326C, I329V, L345Q; nef: G3N, V16I, Q22R, T23A, Q35R, K92R, I101V, N116H, P150E, R151A, D156A, K158Q, S169H, C206*; p1: I5L, N9H; p17: S9T, K26N, I104L, G121R, S125D; p2: N9H, -10T, -11A, M14L; p24: V11T, P14S, N120S, P123A, R154K; p6: P5T, N14D, G18E, E19K, I21M, T22A, -25L, -26L, E34D, Q35C, L38S; pro: L10I, I15V, K55R, S63A; rev: I18T, K39R, A54T, T62S, H82R, S86N, Q95E, V108G, G111D; tat: A21D, S23N, K24N, L36I, G57R, K63E, S87*; vif: M29I, Y30H, V31I, F39V, S46N, H56Y, Q80H, S95R, R131P, P136S, R158G, R181G, N186H, N190S; vpr: Q8R, E13A, E25D, R36G, N48Y, I63V, V70I; vpu: T2S, E5Q, I9V, Q36E, D40E, R47T, D73G, N81D"}}}, {"name": "MG989542", "node_attrs": {"div": 0.15094, "accession": "MG989542", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2011.0}, "Strain_name": {"value": "2547905P000FL_Sb"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T396C", "A423C", "G424A", "T435A", "T479C", "G480A", "A499C", "A513C", "T635C", "A647G", "A699G", "A716C", "A758G", "C771G", "T774G", "G791A", "A812G", "T885C", "T902C", "C1005G", "G1078C", "C1103T", "A1250G", "A1263T", "A1278C", "C1280A", "C1295T", "G1424A", "T1427A", "A1442C", "C1444T", "A1473G", "C1490A", "C1536T", "T1547C", "G1640A", "A1642G", "A1644T", "A1703C", "A1712G", "A1718G", "C1744-", "C1750-", "C1751-", "T1752-", "C1755-", "T1756-", "G1757-", "A1758-", "A1759-", "G1760-", "C1767A", "T1784G", "G1794A", "A1846G", "A1857G", "A1907G", "G1963A", "G1981A", "A2007G", "G2155A", "G2215A", "T2257C", "C2296T", "A2314G", "A2404G", "A2431G", "G2473A", "G2548A", "A2579T", "T2654C", "A2677C", "G2702A", "G2704A", "G2828A", "G2878A", "C2941T", "A2959G", "T2996C", "A3028G", "T3034C", "A3043C", "A3120T", "G3307A", "G3463A", "T3472C", 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"C6673T", "A6692C", "G6716A", "T6717C", "A6733G", "A6753T", "A6754G", "A6759T", "A6767G", "A6797G", "G6806T", "A6810G", "A6819G", "C6850A", "A6865G", "T6888C", "T6916C", "T6922C", "A6935G", "A6947-", "G6948-", "T6949-", "C6991A", "T6994C", "-6995A", "-6996A", "-6997A", "-6998A", "-6999G", "-7000T", "-7001A", "-7002A", "-7003T", "-7007A", "C7045T", "C7084A", "A7085G", "C7087T", "A7088G", "G7089C", "T7090A", "A7093G", "A7108C", "T7114C", "C7127T", "T7153C", "T7156G", "T7162G", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "G7195A", "A7630C", "A7640G", "A7644G", "C7656T", "A7689C", "A7714G", "A7721G", "T7747G", "A7753G", "A7755C", "A7763C", "A7799C", "T7801A", "T7852G", "A7858G", "T7888A", "T7939G", "A7948T", "G7957A", "G7992A", "A7998G", "C8005A", "C8038G", "A8076G", "G8079T", "T8115C", "T8164C", "C8165A", "T8171A", "A8182T", "A8191G", "A8222G", "G8234A", "C8291T", "A8323C", "C8445A", "G8469A", "T8477C", "T8567A", "C8568T", "A8584T", "A8591G", "G8666T", "A8717C", "C8747T", 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E157G, N159K, S161N, A176T, V288T, K300M, Y302F, I305V, K315E, A318S, K319G, K322R, M345T, K361E, S365K, -367K, -368S, T371-, I411V, S412A, N435S, M447I; gp41: E109D, N113D, N114S, T118I, N129T, N140D, K144R, D148E, E151A, K154Q, N166Q, N195K, H212Q, E215D, G230D, D232G, H258R, R259L, V271A, L288I, L290I, T307A, V311I, L330F, L340F; nef: G3S, Q35K, V43I, Y81F, E108D, Q125H, R151K, N157T, E176D, E177D, K192R, L198Q; p1: K4R, I5F; p17: R30Q, L34I, G49S, E55A, I60L, I104M, T122A, S125N, K127N; p2: Q6H, A7V, Q8T; p24: P14A, L15V, P92A, G116A, T178S, N183Q; p6: T22-, P24-, K27-, Q30K, V39I; p7: R3G; pro: K20R, N37D, K70R; rev: R14K, S31A, T34S, A37T, R53S, T62A, L64V, S106H, V108D, G111E, T112S, K115E; tat: N12K, N67D, P68T, I77S, N80I, G83D; vif: F39C, H56Q, G60E, E61D, T74P, R131S, T154I, P156S, R184Q; vpr: Q11P, R32K, N48D, I63T; vpu: A27G, Y30I, R31K, I33L, R35K, L42I, V43I"}}}]}]}]}, {"name": "CRF01_AE_NODE_0000017", "node_attrs": {"div": 0.11319999999999998, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A1783-", "G3715A", "A3937G", "A6333G", "-6987A", "-6988T", "C7164A", "G7744A", "T7939G", "G8105A"], "gp120": ["E157N"], "gp41": ["H212Q", "A268T"], "rev": ["S31A", "S86N"], "tat": ["K24N", "I77S"]}, "labels": {"aa": "gp120: E157N; gp41: H212Q, A268T; rev: S31A, S86N; tat: K24N, I77S"}}, "children": [{"name": "CRF01_AE_NODE_0000018", "node_attrs": {"div": 0.11523999999999998, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["-1753C", "T4702C", "C4728A", "C5482T", "-6198C", "-6207C", "G6218A", "T6242A", "T6287C", "A6734G", "T6735A", "-6978A", "-6980A", "-6986A", "-6993C", "T7009-", "G7055A"], "RT-p51": ["R238K"], "RT-p66": ["R238K"], "gp120": ["S130T", "Y145H", "-367Y", "G401R", "A402T"], "gp41": ["G230D"], "p2": ["Q8T"], "vif": ["F39S", "H48N"]}, "labels": {"aa": "RT-p51: R238K; RT-p66: R238K; gp120: S130T, Y145H, -367Y, G401R, A402T; gp41: G230D; p2: Q8T; vif: F39S, H48N"}}, "children": 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"A8717G", "G8732A", "C8741T", "A8746T", "C8771T", "G8846A", "A8851T", "A8859C", "T8860A", "G8868A", "A8870C", "A8873G", "A8924C", "G8945T", "A8947T", "A8954G", "A8978G", "A8981G", "G8982A", "C9018T", "C9023A", "A9042G"], "INT": ["N39S", "V72I", "I101V", "R136K", "V151I", "T218S"], "RT-p51": ["K39Q", "E43K", "S123N", "E245Q", "E248D", "A272P", "K275R", "A286T", "P294Q", "A304E", "L325I", "K350R", "A376V", "R390K", "V435A"], "RT-p66": ["K39Q", "E43K", "S123N", "E245Q", "E248D", "A272P", "K275R", "A286T", "P294Q", "A304E", "L325I", "K350R", "A376V", "R390K", "V435A", "V517I", "Q520E"], "gp120": ["D4N", "D21E", "H33Q", "E34D", "T35P", "V40I", "L58M", "L83I", "L97F", "D105K", "A106L", "-107N", "-109D", "-111S", "-112T", "-113T", "-114N", "-115S", "-116S", "E125-", "V126-", "K127-", "L137V", "K150R", "N157G", "N160T", "R164M", "K212R", "L249I", "N251D", "R276I", "I279T", "Q287R", "I295V", "K300Q", "E304T", "K319R", "Q334A", "N349I", "K361N", "S365K", "-376G", "-377V", "-379N", "-381N", "-382E", "-383T", "I387T", "S412R", "T414A", "T427V", "N432P", "N435R", "E479D"], "gp41": ["K80T", "F81L", "I91V", "A96N", "T102S", "E109D", "E110Q", "N113R", "I118T", "E119Q", "E133G", "D148E", "T165S", "T208I", "P219L", "G225E", "S239T", "A267V", "L290I", "I301V", "W326G"], "nef": ["G3N", "S8G", "I10K", "V11R", "G12E", "R17I", "R19K", "I20M", "R21K", "A26V", "E28T", "G29E", "K39R", "S46T", "C55S", "K104R", "Y135F", "M168I", "Q170L", "M173Q", "A176T", "E201D", "Y202F"], "p1": ["K4R", "I5L", "N9H"], "p17": ["A15T", "V82L", "V83A", "Q90R", "R91G", "E93G", "K95Q", "Q112E", "G121A", "T122A", "S124A"], "p2": ["Q6H", "T8Q", "N9S", "-10T"], "p24": ["A6P", "V59I", "T110N", "N120S", "N183H"], "p6": ["G16M", "M17G", "G18-", "E19-", "I21E", "S23T", "-25S", "-26L", "L38S", "V39I"], "pro": ["I72V", "M89L"], "rev": ["E11D", "A15V", "A31T", "E57D", "N86D", "E105K", "V108D", "T114A"], "tat": ["N12K", "A21P", "Y26F", "C31V", "L36I", "T58P", "D64N", "N67D", "I69L", "P73S", "S77N", "P84S"], "vif": ["V31I", "K37G", "G60E", "R67K", "K77R", "Q80H", "V85A", "R92K", "Q105H", "Q110H", "S137A", "N140T", "K157R", "V166I", "R181E", "G182D", "E185D"], "vpr": ["Q8R", "E13Q", "N28I", "T49N", "G94S"], "vpu": ["E5Q", "L34Q", "R37K", "R41K", "K44E", "T61N", "D73N", "N81D", "L82V"]}, "labels": {"aa": "INT: N39S, V72I, I101V, R136K, V151I, T218S; RT-p51: K39Q, E43K, S123N, E245Q, E248D, A272P, K275R, A286T, P294Q, A304E, L325I, K350R, A376V, R390K, V435A; RT-p66: K39Q, E43K, S123N, E245Q, E248D, A272P, K275R, A286T, P294Q, A304E, L325I, K350R, A376V, R390K, V435A, V517I, Q520E; gp120: D4N, D21E, H33Q, E34D, T35P, V40I, L58M, L83I, L97F, D105K, A106L, -107N, -109D, -111S, -112T, -113T, -114N, -115S, -116S, E125-, V126-, K127-, L137V, K150R, N157G, N160T, R164M, K212R, L249I, N251D, R276I, I279T, Q287R, I295V, K300Q, E304T, K319R, Q334A, N349I, K361N, S365K, -376G, -377V, -379N, -381N, -382E, -383T, I387T, S412R, T414A, T427V, N432P, N435R, E479D; gp41: K80T, F81L, I91V, A96N, T102S, E109D, E110Q, N113R, I118T, E119Q, E133G, D148E, T165S, T208I, P219L, G225E, S239T, A267V, L290I, I301V, W326G; nef: G3N, S8G, I10K, V11R, G12E, R17I, R19K, I20M, R21K, A26V, E28T, G29E, K39R, S46T, C55S, K104R, Y135F, M168I, Q170L, M173Q, A176T, E201D, Y202F; p1: K4R, I5L, N9H; p17: A15T, V82L, V83A, Q90R, R91G, E93G, K95Q, Q112E, G121A, T122A, S124A; p2: Q6H, T8Q, N9S, -10T; p24: A6P, V59I, T110N, N120S, N183H; p6: G16M, M17G, G18-, E19-, I21E, S23T, -25S, -26L, L38S, V39I; pro: I72V, M89L; rev: E11D, A15V, A31T, E57D, N86D, E105K, V108D, T114A; tat: N12K, A21P, Y26F, C31V, L36I, T58P, D64N, N67D, I69L, P73S, S77N, P84S; vif: V31I, K37G, G60E, R67K, K77R, Q80H, V85A, R92K, Q105H, Q110H, S137A, N140T, K157R, V166I, R181E, G182D, E185D; vpr: Q8R, E13Q, N28I, T49N, G94S; vpu: E5Q, L34Q, R37K, R41K, K44E, T61N, D73N, N81D, L82V"}}}, {"name": "MG760395", "node_attrs": {"div": 0.1541, "accession": "MG760395", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "LA"}, "date": {"value": 2011.0}, "Strain_name": {"value": "VI26F2939"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C155G", "-166A", "C207T", "T214A", "T217A", "G354A", "A360G", "G361T", "A374G", "A398G", "A426C", "G438A", "G458A", "A461C", "A491G", "G495C", "C507A", "A521C", "G524A", "T531C", "C535G", "A540C", "A554G", "C558A", "A619G", "A647G", "G654A", "T662G", "C668T", "G697A", "G709A", "A725C", "G810A", "G866A", "G978T", "T992A", "T1001G", "G1019A", "A1025T", "G1078C", "C1115T", "A1123G", "T1182C", "G1184A", "A1277G", "G1298A", "T1329G", "A1339G", "A1350G", "A1359T", "G1418A", "G1443A", "A1456T", "A1461C", "A1492C", "A1495G", "G1498A", "C1514T", "C1541T", "C1613T", "A1664G", "T1676C", "-1729A", "-1749T", "T1756C", "A1772G", "C1775T", "A1776C", "G1778C", "G1779-", "A1780-", "A1781-", "-1783C", "C1825A", "C1826A", "T1828G", "G1829A", "A1837G", "A1858G", "G2023A", "A2075C", "A2149G", "C2263T", "G2273A", "T2323C", "T2520C", "G2602A", "A2626T", "A2629G", "A2743C", "A2788G", "G2914A", "A2915G", "G3001A", "A3027G", "C3031T", "A3120T", "A3166G", "T3172C", "A3196G", "C3271T", "A3277G", "C3322A", "C3359T", "A3364G", "T3505C", "G3766A", "G3796A", "T3844C", "G3859A", "T3904C", "C3908T", "T4039C", "C4072T", "C4076A", "G4078A", "A4093G", "C4141T", "T4153C", "G4276A", "G4366A", "A4382C", "A4399T", "A4402G", "G4708A", "C4761T", "A4774G", "A4838G", "A4860G", "A4864C", "G4870T", "C4889T", "C4890T", "C4965A", "A4967C", "G4968A", "A4976C", "C4977A", "A5023G", "A5051G", "G5059A", "T5072C", "A5159G", "C5239T", "G5312A", "T5319A", "G5382A", "C5384T", "G5418A", "A5446C", "A5447C", "C5491T", "A5509C", "A5575T", "C5578T", "A5621T", "G5635A", "C5727T", "T5731A", "G5734A", "C5756A", "A5784G", "C5789-", "G5791-", "A5792C", "T5793A", "A5796T", "T5797G", "T5798A", "G5799C", "G5800T", "C5801T", "C5802G", "A5803G", "A5804C", "A5805C", "C5806A", "T5807A", "T5808A", "-5809C", "-5810T", "-5811T", "A5817G", "T5836G", "T5896C", "G5915A", "G5965A", "A6008G", "C6023T", "A6060G", "A6065G", "T6072C", "G6086A", "G6092A", "C6097T", "-6170G", "-6174T", "-6175C", "-6180T", "A6185G", "A6186T", "T6187G", "A6195G", "A6200G", "-6201A", "C6202T", "-6204T", "-6205G", "A6206C", "T6213G", "-6226T", "A6229T", "G6230C", "G6234A", "A6282T", "T6289C", "C6318A", "T6322A", "A6327G", "T6340G", "G6392A", "T6393C", "T6466G", "G6547A", "A6648T", "A6689G", "T6694G", "A6751G", "A6759G", "T6760G", "G6774C", "A6781G", "A6797G", "C6826T", "C6857T", "T6876C", "C6885T", "T6898C", "A6937G", "-6954A", "-6955C", "-6962G", "-6963G", "-6964A", "-6967T", "-6968G", "-6970C", "-6971A", "-6972C", "-6973C", "-6975G", "-6976G", "-6977G", "-6979T", "-6981G", "-6983C", "-6984C", "A6990G", "G7026A", "G7106C", "T7114C", "G7145-", "G7146-", "T7147-", "A7151C", "A7152C", "A7154C", "A7157G", "T7159A", "G7182A", "G7195A", "A7219C", "T7222C", "A7227T", "A7241G", "A7299G", "A7504G", "A7620G", "G7633A", "C7690T", "A7703T", "A7735G", "T7843C", "T7864C", "G7868A", "A7885G", "T7920C", "T7930C", "A7931T", "G7939C", "A7964G", "G8032T", "T8097C", "C8112T", "C8146T", "A8173G", "G8180A", "C8182T", "T8196C", "C8213T", "G8231A", "G8330T", "T8366A", "A8372T", "C8382T", "A8403G", "A8407G", "T8414C", "T8456C", "G8469A", "T8480C", "G8486A", "G8516A", "A8517C", "G8518A", "A8584T", "C8699T", "T8701A", "A8750T", "G8753A", "T8800C", "G8808A", "A8812C", "A8827C", "T8829A", "A8861G", "A8874G", "G8882A", "T8887G", "T8903C", "A8942G"], "INT": ["R136Q", "I203L"], "RT-p51": ["V60I", "I142T", "E177D", "I178M", "I274V", "K311R", "Y342F"], "RT-p66": ["V60I", "I142T", "E177D", "I178M", "I274V", "K311R", "Y342F"], "gp120": ["D21N", "N52D", "H57Y", "K69R", "N71D", "V73A", "E78K", "V80I", "-107V", "T110I", "-111N", "-112V", "-113N", "-114S", "-115T", "-116D", "-121M", "-122P", "-123K", "-124G", "E125N", "V126I", "K143M", "P155Q", "N157A", "N158G", "N159S", "V180T", "E265V", "I279V", "H280R", "D294E", "Y302W", "G307A", "K315E", "P335S", "L341P", "T344I", "-379G", "-381D", "-382T", "-383R", "R391K", "V418L", "G431-", "-433P", "N434Q", "N435A", "T436D", "G443E", "M447I", "L455F", "Y458F", "I463V", "K482R"], "gp41": ["M54L", "K106R", "I134L", "A189T", "F206S", "T210S", "Q212H", "R221G", "D230G", "L265S", "T270I", "R277L", "G293S", "I298T", "L304F", "A310T", "A343S"], "nef": ["S8R", "P14S", "R21E", "Q22R", "V43I", "M48I", "R59Q", "Y81F", "F120Y", "V153A", "D156N", "N157T", "N162T", "C163S", "R178G", "M182R"], "p17": ["V7I", "S9V", "V35I", "E42D", "A54P", "Q58K", "E62D", "S66P", "T67S", "K69Q", "L75I", "K95R", "I104M", "V107I", "N109K", "G121D", "S125N", "Q130H"], "p2": ["A7-", "N9Q", "-10S", "-12V", "I13L"], "p24": ["V27I", "V83L", "H87Q", "M96I", "E98D", "G116A", "K131R", "S200A", "K203R", "T207A", "T210S"], "p6": ["M17K", "P24S", "-25P", "K33H", "E34P", "H35P", "P49Q", "L50*"], "p7": ["Q9P", "K10R", "R11K"], "pro": ["L10M", "V11I", "I93L"], "rev": ["K20N", "Y28L", "A31P", "K39R", "T62S", "P100S", "I109V", "G111E", "P112S"], "tat": ["P3L", "N24P", "I45L", "N67Y", "P68S", "L74P", "S77T"], "vif": ["R41K", "K63R", "R92G", "N93T", "S95I", "Q127N", "V128I", "R130S", "R131S", "Q146R", "R158K"], "vpr": ["T19A", "V70I", "F72Y", "A93T"], "vpu": ["E5V", "V10I", "L42I", "V43I", "A50E", "E63D", "W77G"]}, "labels": {"aa": "INT: R136Q, I203L; RT-p51: V60I, I142T, E177D, I178M, I274V, K311R, Y342F; RT-p66: V60I, I142T, E177D, I178M, I274V, K311R, Y342F; gp120: D21N, N52D, H57Y, K69R, N71D, V73A, E78K, V80I, -107V, T110I, -111N, -112V, -113N, -114S, -115T, -116D, -121M, -122P, -123K, -124G, E125N, V126I, K143M, P155Q, N157A, N158G, N159S, V180T, E265V, I279V, H280R, D294E, Y302W, G307A, K315E, P335S, L341P, T344I, -379G, -381D, -382T, -383R, R391K, V418L, G431-, -433P, N434Q, N435A, T436D, G443E, M447I, L455F, Y458F, I463V, K482R; gp41: M54L, K106R, I134L, A189T, F206S, T210S, Q212H, R221G, D230G, L265S, T270I, R277L, G293S, I298T, L304F, A310T, A343S; nef: S8R, P14S, R21E, Q22R, V43I, M48I, R59Q, Y81F, F120Y, V153A, D156N, N157T, N162T, C163S, R178G, M182R; p17: V7I, S9V, V35I, E42D, A54P, Q58K, E62D, S66P, T67S, K69Q, L75I, K95R, I104M, V107I, N109K, G121D, S125N, Q130H; p2: A7-, N9Q, -10S, -12V, I13L; p24: V27I, V83L, H87Q, M96I, E98D, G116A, K131R, S200A, K203R, T207A, T210S; p6: M17K, P24S, -25P, K33H, E34P, H35P, P49Q, L50*; p7: Q9P, K10R, R11K; pro: L10M, V11I, I93L; rev: K20N, Y28L, A31P, K39R, T62S, P100S, I109V, G111E, P112S; tat: P3L, N24P, I45L, N67Y, P68S, L74P, S77T; vif: R41K, K63R, R92G, N93T, S95I, Q127N, V128I, R130S, R131S, Q146R, R158K; vpr: T19A, V70I, F72Y, A93T; vpu: E5V, V10I, L42I, V43I, A50E, E63D, W77G"}}}]}, {"name": "CRF01_AE_NODE_0000020", "node_attrs": {"div": 0.11914999999999998, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G709A", "T992G", "G1253A", "G1443A", "A1718G", "-1783A", "G2380A", "A2626T", "G3796A", "A3891G", "G4779A", "G4978A", "T5660C", "T6166C", "G6167A", "-6172T", "-6174A", "G6179A", "T6184C", "T6213G", "G6234A", "A6303G", "C6318A", "G6336A", "G6392A", "A6638G", "A6648T", "G6693A", "T6717C", "T6949A", "-6995A", "C7463A", "A7541C", "A7640G", "C7691A", "G7734A", "A7964G", "G7992A", "C8213T", "A8409G", "A8425C", "T8477C", "T8505A", "A8793G", "T8835C", "A8859C", "T8860A", "C8934A", "T8935A"], "INT": ["N39S"], "gp120": ["K150R", "N160S", "V180I", "K262E", "E265V", "D294E", "K315N", "T385-"], "gp41": ["K80Q", "Q130T", "R221G"], "nef": ["T23A", "E28A", "C55S", "M173Q", "L198K"], "p17": ["I104L"], "p24": ["H87Q"], "rev": ["K39R"], "vif": ["V65I", "R131H"]}, "labels": {"aa": "INT: N39S; gp120: K150R, N160S, V180I, K262E, E265V, D294E, K315N, T385-; gp41: K80Q, Q130T, R221G; nef: T23A, E28A, C55S, M173Q, L198K; p17: I104L; p24: H87Q; rev: K39R; vif: V65I, R131H"}}, "children": [{"name": "JX447132", "node_attrs": {"div": 0.15111999999999998, "accession": "JX447132", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2006.0}, "Strain_name": {"value": "AA038a_WG3"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "G428A", "C471A", "A491G", "C507A", "A508T", "A509G", "A520C", "T531C", "A534G", "A554G", "A562G", "T583C", "C590T", "G607A", "A645C", "T662C", "G667A", "G671A", "A676G", "A716T", "C771T", "A839G", "T1004C", "A1017C", "C1214T", "A1277G", "C1280T", "G1313A", "C1385T", "C1453T", "T1520C", "A1642G", "A1719G", "A1743-", "C1744-", "-1749G", "A1772G", "A1774G", "C1775G", "A1781G", "T1784G", "C1826G", "A1867G", "G2134A", "T2146C", "A2154G", "A2170G", "G2215A", "G2332A", "T2347A", "T2452C", "G2473A", "G2509A", "A2566G", "A2579T", "G2580A", "T2597C", "A2615-", "G2630A", "C2653T", "C2694T", "G2704T", "G2725A", "C2806T", "A2896G", "C2910G", "G3001A", "G3010A", "A3027G", "G3080A", "A3099G", "C3100A", "A3230G", "C3232T", "A3238G", "C3253T", "G3264A", "A3280G", "T3303C", "G3307A", "A3484G", "C3542T", "G3664A", "C3734A", "T3754C", "G3769A", "C3889T", "G3937A", "C3994A", "C3995A", "G3997A", "C4015A", "C4058A", "G4060T", "T4129G", "G4178A", "G4182A", "C4288G", "A4552G", "C4556T", "G4573A", "A4629C", "T4656A", "G4677A", "G4689A", "T4703C", "G4736A", "A4751G", "A4774G", "G4861A", "A4863G", "A4900G", "T5003C", "C5006T", "G5059A", "T5062C", "G5065A", "T5147C", "G5179A", "G5199A", "C5215A", "C5227T", "T5237C", "A5278G", "A5284C", "T5294C", "A5302C", "A5355C", "C5384A", "G5385A", "T5430C", "A5499G", "A5555C", "A5581C", "A5607G", "T5616A", "C5687G", "G5699T", "G5700A", "A5718G", "G5823T", "T5850C", "T5857G", "A5863C", "G5864A", "A5908G", "A5914C", "C5944T", "A5962G", "C6023T", "A6024T", "T6046C", "C6052T", "A6063G", "A6119C", "A6130G", "T6148C", "-6170G", "T6171C", "-6175C", "A6176C", "A6177T", "-6180G", "A6188G", "A6195G", "C6196A", "T6199C", "-6201A", "C6202T", "-6203G", "-6204A", "-6205C", "-6226T", "A6292G", "T6295A", "A6319G", "A6320C", "G6323A", "A6335G", "T6337G", "A6338G", "T6340G", "A6490C", "C6618T", "C6631A", "A6640G", "A6646T", "A6683G", "C6684A", "A6686G", "T6688C", "A6689G", "A6692C", "G6726A", "A6742G", "A6799C", "C6800A", "A6810G", "G6823A", "C6861A", "A6881G", "C6885A", "T6922C", "T6928C", "A6935G", "A6945G", "T6946G", "G6948T", "A6950-", "C6951-", "T6952-", "T6953-", "-6971A", "-6972G", "-6973A", "-6974A", "-6975A", "-6976T", "-6977G", "-6979A", "-6981G", "-6982C", "-6983A", "-6984C", "-6985G", "T6988C", "-6996A", "-6997T", "C7024T", "G7058A", "A7094C", "A7101G", "T7102G", "T7114C", "A7152C", "T7162G", "A7164C", "T7180C", "A7190G", "A7197G", "G7198A", "G7232A", "G7456A", "A7504G", "T7544C", "C7561A", "T7604C", "C7642A", "A7660G", "A7688G", "A7689G", "A7692T", "G7700A", "A7721G", "T7783C", "G7790A", "A7791G", "G7831A", "G7868A", "C7950T", "C8009A", "A8029C", "G8030T", "G8032T", "C8038G", "C8071T", "T8097G", "T8101C", "G8102A", "A8105G", "A8130G", "T8214A", "G8219A", "A8260T", "T8265C", "C8287T", "A8288T", "T8337A", "C8342A", "G8349A", "A8396C", "G8404A", "A8446G", "T8480C", "G8508A", "C8510T", "G8520A", "T8546C", "C8568T", "T8603A", "C8640T", "T8740C", "C8741T", "A8746T", "G8807A", "G8808A", "A8809G", "A8837G", "T8939C", "G8945A", "A8981G", "T9072C", "A9082G"], "INT": ["L74I", "Q95N", "V135I", "R136Q", "H171Q", "P261S", "Q285P"], "RT-p51": ["K20R", "S162Y", "K174-"], "RT-p66": ["K20R", "S162Y", "K174-"], "gp120": ["S1R", "D4N", "H57F", "N70S", "K89Q", "D105N", "-107N", "N108L", "-109S", "-111N", "-112A", "-113N", "-114R", "-115T", "-116N", "-117D", "-118P", "-119T", "-120I", "-121G", "-122N", "-123I", "-124T", "P155Q", "I156L", "S161E", "S162E", "K212N", "T255I", "H259Q", "T277E", "S278G", "I279V", "V288A", "R291K", "Q316K", "K319G", "P336H", "I343V", "T344K", "K361E", "S365N", "Y367N", "T414P", "N416R", "-433T", "T436E", "N437T", "N446D", "K448R", "V460I"], "gp41": ["F81L", "S101P", "N113E", "N129G", "T130I", "E133K", "N140D", "D163S", "M176I", "A189T", "P216L", "L242F", "A243S", "L265W", "A267T", "T268A", "R277S", "L304Y", "A306T", "V321A", "I329F", "L345Q"], "nef": ["G3S", "E18D", "R21K", "Q35R", "V56I", "A60T", "I133T", "Y135F", "R151G", "D156S"], "p1": ["K4R"], "p17": ["V7I", "M31I", "L46I", "Q58M", "E62A", "S66P", "T67A", "K76R", "V83A", "R91K", "S111N", "K114R", "S125N", "K127N"], "p2": ["A7-", "N9Q", "-10H", "-11V", "-12N"], "p24": ["P14S", "M96L"], "p6": ["N14D", "T22A", "P24L", "D32G", "H35Q"], "pro": ["L10V"], "rev": ["A54E", "S61L", "T62S", "L64V", "C85H", "N86S"], "tat": ["P3Q", "N24K", "Q60P", "I69L", "P81S"], "vif": ["L24I", "V31I", "A35T", "K63R", "R92K", "N93E", "Q105R", "R158K", "I159T", "R160K"], "vpr": ["Y15H", "R32K", "Y45H", "Q66H", "I84L", "G94S"], "vpu": ["L18S", "A27G", "Y30F", "R31I"]}, "labels": {"aa": "INT: L74I, Q95N, V135I, R136Q, H171Q, P261S, Q285P; RT-p51: K20R, S162Y, K174-; RT-p66: K20R, S162Y, K174-; gp120: S1R, D4N, H57F, N70S, K89Q, D105N, -107N, N108L, -109S, -111N, -112A, -113N, -114R, -115T, -116N, -117D, -118P, -119T, -120I, -121G, -122N, -123I, -124T, P155Q, I156L, S161E, S162E, K212N, T255I, H259Q, T277E, S278G, I279V, V288A, R291K, Q316K, K319G, P336H, I343V, T344K, K361E, S365N, Y367N, T414P, N416R, -433T, T436E, N437T, N446D, K448R, V460I; gp41: F81L, S101P, N113E, N129G, T130I, E133K, N140D, D163S, M176I, A189T, P216L, L242F, A243S, L265W, A267T, T268A, R277S, L304Y, A306T, V321A, I329F, L345Q; nef: G3S, E18D, R21K, Q35R, V56I, A60T, I133T, Y135F, R151G, D156S; p1: K4R; p17: V7I, M31I, L46I, Q58M, E62A, S66P, T67A, K76R, V83A, R91K, S111N, K114R, S125N, K127N; p2: A7-, N9Q, -10H, -11V, -12N; p24: P14S, M96L; p6: N14D, T22A, P24L, D32G, H35Q; pro: L10V; rev: A54E, S61L, T62S, L64V, C85H, N86S; tat: P3Q, N24K, Q60P, I69L, P81S; vif: L24I, V31I, A35T, K63R, R92K, N93E, Q105R, R158K, I159T, R160K; vpr: Y15H, R32K, Y45H, Q66H, I84L, G94S; vpu: L18S, A27G, Y30F, R31I"}}}, {"name": "KF835523", "node_attrs": {"div": 0.15641999999999998, "accession": "KF835523", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN337"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C207T", "T213G", "T214A", "T217A", "A224G", "T227A", "A302T", "T362C", "A388G", "G401A", "T435A", "G455A", "G458A", "A534T", "C537A", "T571A", "A584C", "A605G", "A617G", "A645T", "T695A", "G706A", "C707T", "A708G", "A727T", "T774A", "G791A", "A809G", "T861G", "A899G", "G908A", "A914G", "A932G", "A941G", "A1088C", "A1090G", "C1098T", "C1115A", "C1187T", "T1229C", "A1301G", "A1359T", "G1394A", "A1412G", "T1421C", "C1439T", "C1440A", "A1442C", "C1444T", "G1452A", "G1474A", "A1495G", "A1544G", "G1589A", "C1613T", "A1643G", "A1644C", "A1656C", "T1676C", "-1745C", "-1749T", "A1777G", "T1784C", "T1828A", "G1835A", "A1841G", "G1855A", "A1857G", "T1864C", "C1865T", "G1963A", "T1986C", "G1998A", "A2007G", "A2012G", "T2017A", "T2062C", "A2126G", "A2127C", "G2164A", "A2210G", "A2212G", "G2222A", "G2224A", "G2426A", "G2428A", "G2463A", "C2464T", "A2592G", "A2629T", "A2693G", "A2710G", "A2713G", "G2755A", "G2808A", "G2833A", "A2842G", "G2951A", "C2968T", "A2969G", "C2976A", "G2984C", "A2995G", "T2996C", "C3006A", "C3129A", "A3154G", "G3211A", "C3252T", "A3292T", "T3310C", "A3367G", "A3421G", "G3439A", "G3538A", "C3628T", "G3685A", "A3724G", "A3886G", "A4111G", "C4174T", "T4234C", "G4264A", "G4267A", "G4353A", "G4354C", "A4358T", "A4384G", "T4543C", "A4564G", "A4611G", "A4682T", "A4721G", "G4769A", "G4786A", "G4859A", "A4864C", "C4911T", "A4913C", "A4916C", "C4925A", "C4977T", "A5024G", "T5147A", "G5170A", "G5176A", "A5187G", "C5222T", "G5236A", "C5242T", "A5247G", "A5269G", "G5272A", "A5302G", "G5312A", "T5412G", "G5437C", "G5448T", "T5475C", "C5478T", "A5480C", "G5545A", "G5556A", "A5570G", "A5611T", "C5612T", "A5613C", "G5619A", "T5659G", "T5679C", "A5689G", "T5695C", "G5699A", "G5712A", "G5729A", "G5730A", "T5731C", "G5734A", "C5756A", "A5817G", "C5826T", "T5847C", "T5851G", "C5862T", "G5907A", "T5917G", "G5972A", "C6004T", "A6024C", "G6029A", "A6043G", "C6097T", "C6110G", "T6134C", "A6159G", "A6168G", "T6169C", "-6170T", "-6175T", "-6180A", "A6186C", "A6192C", "T6193A", "A6195C", "C6198A", "A6200G", "-6201T", "-6203C", "-6204C", "-6205T", "A6206G", "C6207A", "A6211G", "T6217G", "-6226A", "A6229T", "C6263A", "A6275C", "G6280A", "A6288G", "A6311C", "C6317G", "A6319C", "A6324G", "T6325A", "A6329G", "A6335T", "A6339G", "A6342G", "G6345A", "T6385C", "A6525G", "A6538C", "C6586T", "A6604G", "G6716A", "T6719C", "A6753G", "A6759T", "T6769C", "A6780T", "G6788A", "A6799T", "G6802A", "A6822G", "-6833C", "-6834C", "-6835T", "A6848G", "C6850A", "T6853C", "A6856G", "T6863A", "C6864T", "G6910A", "A6932T", "A6935C", "G6948A", "-6954A", "-6955G", "-6956T", "-6957T", "-6958T", "-6959A", "-6960A", "-6961T", "-6962G", "-6963A", "-6964A", "-6965A", "-6966C", "-6967T", "-6977C", "-6979C", "-6981C", "-6982G", "-6983G", "-6984A", "-6985A", "A6989G", "T6994C", "-6996C", "-6997A", "-7001A", "-7002A", "-7003G", "-7004G", "-7005A", "-7006A", "-7007A", "-7008G", "-7009G", "C7059T", "G7072A", "T7075C", "G7076A", "C7077A", "A7094G", "G7106C", "C7127A", "A7148G", "A7149C", "A7152G", "A7155C", "G7160A", "A7163G", "C7165T", "G7168A", "G7195A", "A7246G", "A7255G", "A7256G", "A7297G", "A7339G", "T7462C", "T7466C", "G7592T", "T7656C", "C7690T", "A7692C", "A7703C", "A7722C", "T7747G", "G7759A", "A7796T", "T7801A", "A7818G", "T7843C", "T7852C", "A7862G", "A7948T", "G7957A", "G7991A", "A8002G", "A8011C", "G8036A", "C8037T", "C8044G", "C8092A", "T8094C", "T8164C", "A8191G", "T8196C", "T8209C", "A8222T", "G8239A", "G8281C", "C8293T", "C8294A", "G8388A", "A8407G", "T8411G", "G8479C", "T8480A", "A8517C", "G8518A", "G8588A", "T8690C", "T8701A", "A8739G", "G8794C", "A8801G", "C8825T", "A8827G", "C8843T", "A8873G", "A8917C", "A8933G", "A8947T", "G8982A", "C8985A", "T8986C", "-8988T", "T9014G", "T9051A", "T9074G", "T9097G", "G9132A"], "INT": ["G193D", "S195C", "I203M", "D279G"], "RT-p51": ["K11A", "K39E", "E43K", "V111I", "S123N", "K166R", "E177D", "T200A", "A286T", "I292V", "P294Q", "E297Q", "A304E", "P345Q", "T386I", "E399D"], "RT-p66": ["K11A", "K39E", "E43K", "V111I", "S123N", "K166R", "E177D", "T200A", "A286T", "I292V", "P294Q", "E297Q", "A304E", "P345Q", "T386I", "E399D"], "gp120": ["S3L", "R18K", "D21E", "V40I", "H57P", "E59K", "Q86E", "N102S", "A106V", "-107K", "-109C", "E125-", "V126-", "K127-", "N128-", "C129-", "T130-", "L137I", "K141Q", "H145R", "I153L", "P155D", "N157G", "N159D", "S161Y", "Y163C", "R164K", "L165N", "I166N", "N167S", "K224R", "H280N", "V288T", "F289L", "K300R", "Y302F", "K309I", "E312K", "K319E", "E323G", "-326P", "-327N", "N328-", "I332V", "S337I", "T360S", "K361Q", "S365K", "-368M", "-369F", "-370N", "-371E", "-372T", "-373H", "-374T", "-375E", "-376N", "-377D", "-378T", "-379T", "-380K", "-381E", "-382R", "T402V", "M406I", "A408N", "T414A", "V418L", "L425I", "N432A", "-433S", "N434T", "T436N", "N437D", "M447I", "I468V"], "gp41": ["V97L", "N113D", "I118T", "I134L", "N140T", "D148E", "T165S", "N166K", "K172R", "I187V", "E215D", "D230N", "A245I", "D247E", "F263L", "I264T", "I298T", "L304F", "T307S", "W326C", "H331N"], "nef": ["V16I", "Q22R", "S46T", "R59Q", "F120Y", "I133V", "R151A", "N162S", "K192T", "Y202F"], "p1": ["I5L", "N9H"], "p17": ["K18R", "L34I", "T67S", "L68I", "F79Y", "S124N", "S125D", "N131I"], "p2": ["A7H"], "p24": ["L15I", "S44A", "N120S", "P123S", "D128E", "T210S"], "p6": ["P24S", "-25L", "K33R", "L50*"], "p7": ["R3K", "K10R"], "pro": ["V13I", "I15V", "K20R", "L63P", "C67Y", "K70R", "I72V"], "rev": ["R14K", "I19V", "T34S", "A37T", "R48K", "I52V", "I55L", "T62A", "C63Y", "R66G", "H82N", "S106P", "K115E"], "tat": ["N12K", "A21P", "Q35P", "G57R", "H65R", "N80I", "G83D"], "vif": ["I9V", "R67K", "N93T", "L109F", "Q110H", "D113E", "H131Y"], "vpr": ["Y15N", "N28S", "H40Y", "N48S", "V70I"], "vpu": ["T2F", "L18A", "I28V", "Y30L", "R31K", "R41K", "V43I", "A50E", "L82V"]}, "labels": {"aa": "INT: G193D, S195C, I203M, D279G; RT-p51: K11A, K39E, E43K, V111I, S123N, K166R, E177D, T200A, A286T, I292V, P294Q, E297Q, A304E, P345Q, T386I, E399D; RT-p66: K11A, K39E, E43K, V111I, S123N, K166R, E177D, T200A, A286T, I292V, P294Q, E297Q, A304E, P345Q, T386I, E399D; gp120: S3L, R18K, D21E, V40I, H57P, E59K, Q86E, N102S, A106V, -107K, -109C, E125-, V126-, K127-, N128-, C129-, T130-, L137I, K141Q, H145R, I153L, P155D, N157G, N159D, S161Y, Y163C, R164K, L165N, I166N, N167S, K224R, H280N, V288T, F289L, K300R, Y302F, K309I, E312K, K319E, E323G, -326P, -327N, N328-, I332V, S337I, T360S, K361Q, S365K, -368M, -369F, -370N, -371E, -372T, -373H, -374T, -375E, -376N, -377D, -378T, -379T, -380K, -381E, -382R, T402V, M406I, A408N, T414A, V418L, L425I, N432A, -433S, N434T, T436N, N437D, M447I, I468V; gp41: V97L, N113D, I118T, I134L, N140T, D148E, T165S, N166K, K172R, I187V, E215D, D230N, A245I, D247E, F263L, I264T, I298T, L304F, T307S, W326C, H331N; nef: V16I, Q22R, S46T, R59Q, F120Y, I133V, R151A, N162S, K192T, Y202F; p1: I5L, N9H; p17: K18R, L34I, T67S, L68I, F79Y, S124N, S125D, N131I; p2: A7H; p24: L15I, S44A, N120S, P123S, D128E, T210S; p6: P24S, -25L, K33R, L50*; p7: R3K, K10R; pro: V13I, I15V, K20R, L63P, C67Y, K70R, I72V; rev: R14K, I19V, T34S, A37T, R48K, I52V, I55L, T62A, C63Y, R66G, H82N, S106P, K115E; tat: N12K, A21P, Q35P, G57R, H65R, N80I, G83D; vif: I9V, R67K, N93T, L109F, Q110H, D113E, H131Y; vpr: Y15N, N28S, H40Y, N48S, V70I; vpu: T2F, L18A, I28V, Y30L, R31K, R41K, V43I, A50E, L82V"}}}]}]}, {"name": "CRF01_AE_NODE_0000021", "node_attrs": {"div": 0.11462999999999998, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T1756-", "T2499C", "A4900G", "G5599A", "T5602A", "T5696A", "-6180C", "T6181C", "G6323A", "A6751G", "T6953-", "-7003T", "-7004G", "-7005G", "-7006C", "-7007A", "-7008C", "C7095T", "T7162G", "C7165T"], "RT-p51": ["I135T"], "RT-p66": ["I135T"], "gp120": ["T414I"], "gp41": ["M54L"], "p6": ["S23-"], "vif": ["Q105R"]}, "labels": {"aa": "RT-p51: I135T; RT-p66: I135T; gp120: T414I; gp41: M54L; p6: S23-; vif: Q105R"}}, "children": [{"name": "CRF01_AE_NODE_0000022", "node_attrs": {"div": 0.12058999999999997, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G614T", "A645C", "T774G", "C917T", "G1253A", "C1440A", "C1444T", "A1461G", "T1583C", "A1586G", "G1673A", "G1981A", "A2407G", "C2464T", "A2579T", "A3196G", "T3303C", "G3538A", "G3616A", "G4063A", "T4656A", "T5027C", "G5059A", "G5131A", "C5221T", "C5425A", "T5797-", "T5798-", "G5800T", "C5801T", "C5802G", "A5803G", "A5804C", "A5805C", "C5806A", "T5808A", "-5809C", "-5810T", "-5811T", "-6172T", "T6325C", "A6791G", "C6792T", "A6798C", "G6806A", "C6807A", "T6952-", "C6991T", "-6998A", "-7000A", "-7001A", "-7002A", "C7059T", "A7093G", "T7102C", "A7158G", "A7701C", "A7964G", "C8005A", "T8047C", "T8155C", "G8216A", "A8288T", "A8378-", "G8486A", "G8518A", "G8558A", "A8688C", "G8846A", "A8947T", "T9097-", "G9132-"], "RT-p51": ["S162C", "M403T"], "RT-p66": ["S162C", "M403T"], "gp120": ["A106-", "N159S", "T313V", "K315T", "K319N", "A402V", "E479D"], "gp41": ["E133A", "K144R", "R221G", "D305N", "I329F"], "nef": ["M48I", "N116H", "M168I", "Y202F"], "p17": ["E93D", "I104L"], "p2": ["-10V", "I13-"], "p24": ["L15V"], "rev": ["K39R", "T62A", "S67P", "S103P"], "tat": ["Q17K"], "vif": ["L24I", "R158K", "G182D"]}, "labels": {"aa": "RT-p51: S162C, M403T; RT-p66: S162C, M403T; gp120: A106-, N159S, T313V, K315T, K319N, A402V, E479D; gp41: E133A, K144R, R221G, D305N, I329F; nef: M48I, N116H, M168I, Y202F; p17: E93D, I104L; p2: -10V, I13-; p24: L15V; rev: K39R, T62A, S67P, S103P; tat: Q17K; vif: L24I, R158K, G182D"}}, "children": [{"name": "KF835528", "node_attrs": {"div": 0.15875999999999998, "accession": "KF835528", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "07CNYN343"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "A388G", "C399A", "G407A", "A412G", "G428A", "A581G", "A585G", "C586T", "T636C", "T662G", "A663-", "A664-", "G665-", "A666-", "G667-", "C668-", "C669A", "C672T", "A673C", "A676G", "G683A", "G697C", "G978A", "T979C", "G998A", "A1007G", "G1019A", "C1137T", "C1211T", "G1232A", "C1280T", "C1299T", "A1442T", "G1443A", "G1452A", "G1476A", "G1477A", "A1492C", "A1525G", "G1543A", "C1613T", "G1619A", "A1643G", "A1644T", "T1645G", "T1646G", "T1653C", "C1654T", "G1663A", "A1664G", "A1670G", "T1679C", "A1701T", "A1742C", "-1745C", "-1749C", "-1753C", "-1756G", "C1761A", "G1769A", "A1776C", "-1783C", "T1864C", "C1865T", "A1897T", "A1907G", "G1968A", "A2059G", "T2080A", "A2212G", "G2273A", "A2406G", "A2629T", "C2694T", "G2761A", "T2779G", "T2803A", "T2824A", "C2831T", "G2837A", "C2845T", "G2909C", "G2920A", "G2926A", "A2937G", "T3034G", "A3076T", "A3082G", "A3154G", "C3266T", "T3433A", "G3435A", "G3448A", "A3486G", "C3499T", "T3577C", "C3649T", "T3742C", "C3751T", "A3836G", "A3862T", "G3869A", "C3889T", "A3891G", "T3904C", "T3962C", "C3970T", "T4039G", "T4085C", "A4108G", "T4153A", "C4201T", "G4267A", "A4279G", "A4306G", "A4391T", "G4642A", "G4697A", "T4702C", "T4706C", "T4743C", "A4773G", "A4774C", "T4776C", "A4826T", "A4860G", "G4870A", "A4878G", "A4916C", "A4951G", "T5081C", "G5082A", "A5143G", "T5147C", "A5150-", "A5151-", "T5152-", "G5153-", "A5154-", "A5155-", "T5197C", "A5246G", "C5248A", "C5250A", "T5254C", "G5257A", "A5277T", "T5293A", "A5336G", "A5345G", "T5356C", "T5412G", "G5427A", "C5438A", "T5439A", "G5448T", "T5466C", "C5478T", "C5482T", "T5515C", "C5551T", "G5565A", "A5581C", "A5594G", "C5612A", "A5613C", "A5634T", "T5636C", "A5644G", "A5689C", "G5699A", "A5709G", "G5729A", "A5733G", "G5734A", "A5737G", "A5781T", "G5799-", "T5807C", "G5824A", "C5834A", "T5953G", "C6023T", "G6028A", "T6091C", "T6148C", "T6151G", "-6170T", "A6173G", "-6174T", "-6175G", "G6179T", "C6180T", "C6181G", "T6184C", "A6188T", "T6193C", "-6198G", "-6201G", "-6203T", "-6204A", "-6205T", "-6207A", "A6208C", "T6213G", "G6218A", "A6225G", "-6226T", "G6234A", "T6241C", "C6263A", "G6267T", "G6283A", "T6322G", "A6324G", "A6329G", "T6340G", "G6345T", "G6346A", "T6347C", "C6363A", "G6392A", "A6443C", "G6451A", "A6514G", "G6547A", "A6571G", "G6575A", "A6581G", "A6595G", "C6607T", "C6678T", "A6691G", "A6692C", "A6714G", "G6726A", "T6735G", "A6736C", "G6751A", "A6767G", "G6773A", "G6774A", "A6785G", "A6786T", "T6793A", "G6809A", "A6811C", "A6813C", "C6824A", "-6833A", "-6834A", "-6835G", "G6841A", "A6881G", "C6925T", "A6937C", "G6948C", "T6949A", "-6952A", "-6977A", "-6978A", "-6979C", "-6980C", "-6981T", "-6982G", "-6983T", "-6984T", "-6985T", "-6986G", "-6993G", "T6994C", "-6995A", "-6996C", "-6997A", "-6999A", "G7005A", "A7007C", "A7040G", "G7089A", "C7127A", "A7152C", "A7155C", "T7156A", "T7159G", "A7161G", "A7256G", "G7291T", "G7333A", "C7347A", "G7456A", "C7463T", "T7489C", "G7519A", "C7528T", "T7575C", "C7590A", "A7626T", "G7633A", "A7655G", "G7700A", "A7703C", "C7710T", "C7732A", "T7747A", "T7774C", "T7801A", "G7835A", "T7918C", "C7921T", "A7931T", "C7932T", "T7936A", "C7960A", "A7971G", "G7977A", "A7989G", "A8000G", "C8009A", "G8019A", "C8037T", "C8038G", "T8091G", "C8103T", "A8105G", "C8131G", "G8133A", "T8164C", "T8221C", "C8232T", "G8241A", "A8282G", "G8328T", "G8329A", "T8337A", "T8366A", "T8371C", "T8374C", "G8377A", "-8378T", "G8398A", "C8412G", "C8413A", "T8414A", "C8415A", "C8416A", "G8421A", "T8450C", "T8505A", "G8537A", "T8539A", "A8540G", "G8555A", "A8647G", "C8648G", "A8693G", "C8715G", "A8717C", "C8723T", "G8794A", "G8799A", "G8808C", "C8810G", "G8817A", "A8824G", "A8826G", "A8827C", "G8848A", "A8861G", "G8864T", "A8873G", "G8894A", "C8905G", "A8977-", "A8978-", "C8979-", "T8980-", "A8981-", "G8982-", "-8988T", "T9074C", "C9075T", "-9097G", "-9132T"], "INT": ["T21A", "V32I", "N39S", "T206S"], "RT-p51": ["V60I", "K104R", "T200I", "E248K", "A272P", "K281R"], "RT-p66": ["V60I", "K104R", "T200I", "E248K", "A272P", "K281R", "S447N", "Q464R"], "gp120": ["H33Q", "H57Y", "-106D", "-107V", "-109L", "-111N", "-112S", "-113N", "-114N", "-115S", "-116S", "-117Y", "-118N", "-119I", "-120G", "-121N", "-122I", "-123T", "-124G", "L137I", "R138I", "I156M", "N157S", "R164I", "T170N", "V180I", "I197L", "E241K", "I243V", "T275I", "I279M", "H280R", "Q287R", "R291K", "D294S", "I305V", "G307K", "N311V", "A318N", "K320T", "H324N", "-326K", "-327N", "N328-", "I343V", "K361N", "S365T", "-367N", "-368L", "-369N", "-370S", "-371T", "-372K", "-373N", "-384D", "T385P", "I396V", "S412N", "L425I", "-433T", "N434T", "N435R", "T436G", "I468V"], "gp41": ["A15E", "I91T", "A96D", "Y108F", "I118V", "A133T", "I134L", "T136I", "D143E", "D148E", "N166K", "V178I", "T210F", "H211Q", "E223G", "G225E", "Q229R", "R233G", "S239N", "A245V", "F263C", "A267V", "T268A", "R277L", "A310V", "G313E", "R327G", "R342I", "L345Q"], "nef": ["S8R", "I10T", "V11A", "G12D", "R19K", "T23A", "P24E", "P25K", "A27T", "C55S", "R59K", "Y102W", "Q125D", "R151K", "V153I", "D156Q", "G159R", "N161S", "N162A", "S169N", "E174D", "A188G"], "p1": ["I5W", "S8L", "G11E"], "p17": ["K18R", "K26R", "M31I", "T84V", "N109K", "Q112R", "Q113T", "K114-", "T115-", "G121A"], "p2": ["A7H", "Q8T"], "p24": ["V83T", "M96I"], "p6": ["T8S", "-25S", "-26R", "Q28K", "K33Q", "H35P"], "p7": ["G4N", "Q9P", "K20R", "R26K"], "pro": ["L33F", "N37D", "R57K"], "rev": ["R17K", "Y28F", "S30T", "Q51R", "R53S", "A54E", "L64V", "N86S", "Q95E", "S106P"], "tat": ["N12K", "A21E", "Y47H", "P59S", "I69L", "P75S", "I76N", "P84Q"], "vif": ["R19K", "F39S", "S53P", "K63A", "Q80H", "R92G", "N93K", "S95N", "I98V", "Q110H", "K122R", "V166I", "N186S", "M189-", "N190-"], "vpr": ["Y15H", "N16-", "E17-", "N48E", "T49N", "E58V", "I84T"], "vpu": ["T2N", "V10A", "I13V", "I28L", "R31K", "R41K", "V43I", "K44E", "E58D", "K66T", "D73N", "P76H"]}, "labels": {"aa": "INT: T21A, V32I, N39S, T206S; RT-p51: V60I, K104R, T200I, E248K, A272P, K281R; RT-p66: V60I, K104R, T200I, E248K, A272P, K281R, S447N, Q464R; gp120: H33Q, H57Y, -106D, -107V, -109L, -111N, -112S, -113N, -114N, -115S, -116S, -117Y, -118N, -119I, -120G, -121N, -122I, -123T, -124G, L137I, R138I, I156M, N157S, R164I, T170N, V180I, I197L, E241K, I243V, T275I, I279M, H280R, Q287R, R291K, D294S, I305V, G307K, N311V, A318N, K320T, H324N, -326K, -327N, N328-, I343V, K361N, S365T, -367N, -368L, -369N, -370S, -371T, -372K, -373N, -384D, T385P, I396V, S412N, L425I, -433T, N434T, N435R, T436G, I468V; gp41: A15E, I91T, A96D, Y108F, I118V, A133T, I134L, T136I, D143E, D148E, N166K, V178I, T210F, H211Q, E223G, G225E, Q229R, R233G, S239N, A245V, F263C, A267V, T268A, R277L, A310V, G313E, R327G, R342I, L345Q; nef: S8R, I10T, V11A, G12D, R19K, T23A, P24E, P25K, A27T, C55S, R59K, Y102W, Q125D, R151K, V153I, D156Q, G159R, N161S, N162A, S169N, E174D, A188G; p1: I5W, S8L, G11E; p17: K18R, K26R, M31I, T84V, N109K, Q112R, Q113T, K114-, T115-, G121A; p2: A7H, Q8T; p24: V83T, M96I; p6: T8S, -25S, -26R, Q28K, K33Q, H35P; p7: G4N, Q9P, K20R, R26K; pro: L33F, N37D, R57K; rev: R17K, Y28F, S30T, Q51R, R53S, A54E, L64V, N86S, Q95E, S106P; tat: N12K, A21E, Y47H, P59S, I69L, P75S, I76N, P84Q; vif: R19K, F39S, S53P, K63A, Q80H, R92G, N93K, S95N, I98V, Q110H, K122R, V166I, N186S, M189-, N190-; vpr: Y15H, N16-, E17-, N48E, T49N, E58V, I84T; vpu: T2N, V10A, I13V, I28L, R31K, R41K, V43I, K44E, E58D, K66T, D73N, P76H"}}}, {"name": "MT121537", "node_attrs": {"div": 0.15713999999999997, "accession": "MT121537", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2014.0}, "Strain_name": {"value": "4028P00m"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A380G", "A426C", "A440C", "G458A", "A492T", "T506C", "G530A", "G579A", "C596T", "C603A", "G615A", "A619G", "A661G", "G762A", "G803A", "C830T", "C872T", "G911A", "G956A", "A968C", "A1025G", "A1090G", "C1091T", "T1143C", "C1187T", "C1220T", "T1244C", "C1295A", "G1313A", "T1325C", "T1358C", "A1400G", "A1404G", "T1421C", "C1439T", "A1442C", "C1453T", "T1574C", "A1718C", "A1719G", "A1736G", "A1740-", "T1741-", "A1742-", "A1743-", "C1744-", "C1750-", "C1751-", "T1752-", "A1754-", "C1755-", "G1757-", "A1759G", "A1771-", "A1772-", "G1773-", "A1774-", "C1775-", "A1781C", "-1783T", "T1784C", "T1790C", "T1792C", "C1825T", "G1852A", "G1855A", "G1936A", "C1960T", "G1963A", "A1982G", "C1985G", "T1986C", "T1999G", "A2002G", "A2007G", "T2017A", "T2035C", "G2134A", "A2221G", "G2224A", "A2230G", "A2329G", "G2332A", "C2353T", "A2422G", "A2446C", "T2476C", "T2494C", "C2521T", "G2530A", "A2560G", "A2566G", "T2638C", "G2656A", "T2668A", "A2693G", "A2710G", "A2734G", "A2841G", "A2875G", "G2878A", "T2899C", "G2921A", "C2982G", "G3071A", "G3080A", "C3128T", "A3130T", "A3142G", "A3165G", "A3214G", "A3226C", "G3264A", "A3279G", "A3302G", "A3382G", "T3412C", "T3433C", "G3477A", "T3505C", "G3553A", "C3589T", "G3685A", "A3715G", "C3763T", "G3766A", "G3796A", "A3808C", "T3829C", "A3866G", "A3871G", "G3877A", "T3909A", "A3934G", "T4024C", "C4072T", "T4126C", "G4243A", "G4264A", "G4268A", "A4378T", "C4381T", "A4505G", "C4534G", "T4543G", "A4650C", "G4673A", "T4701A", "G4723A", "G4727A", "C4728A", "A4733C", "G4736A", "G4769T", "G4779A", "G4829A", "C4841T", "A4862G", "A4864C", "C4871T", "T4919C", "C4977A", "T4991C", "G5030A", "T5062C", "T5084G", "T5147A", "T5209C", "G5211T", "A5299G", "T5424C", "G5444A", "G5448C", "A5463T", "C5482A", "G5493A", "A5560C", "A5563C", "T5577C", "A5587G", "G5620C", "G5643A", "A5694G", "A5696G", "A5704C", "T5708A", "G5711A", "C5713G", "C5756A", "A5781G", "A5784G", "C5789-", "A5790-", "G5791-", "A5792C", "T5793A", "-5797G", "-5798A", "T5807A", "G5812A", "A5817G", "C5826T", "T5844G", "G5845A", "C5869T", "T5884C", "T5896A", "G5915A", "T5917A", "G5956T", "A5957C", "A6030T", "C6052T", "C6067A", "T6072C", "C6110G", "A6124T", "A6159G", "T6160G", "C6165G", "G6167A", "A6168C", "-6170A", "-6174A", "-6175T", "A6185G", "A6186T", "A6188G", "C6189A", "A6192C", "T6193A", "A6195C", "-6198T", "-6201A", "-6203A", "-6204T", "-6205A", "A6206G", "-6207G", "T6210A", "A6211T", "G6212A", "A6216C", "T6217A", "T6219A", "A6220G", "A6221G", "C6222A", "G6224-", "A6225-", "G6227-", "A6228-", "A6229-", "G6230A", "A6232G", "A6257G", "T6295G", "A6327G", "A6330G", "G6333A", "T6334C", "A6339G", 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"A8522T", "A8564G", "T8594G", "C8651A", "A8717T", "A8739G", "T8756C", "G8784C", "A8792G", "G8804A", "G8818A", "A8859C", "G8875A", "G8904T", "A8909T", "T8935G", "T8939C", "A8981G", "C9039-", "T9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "A9060-", "A9061-", "A9062-", "G9063-", "C9064-", "A9065-", "G9066-", "C9067-", "C9068-", "G9069-", "C9070-", "T9071-", "T9072-", "T9073-", "T9074-", "C9075-", "G9076-", "C9077-", "T9078-", "T9079-", "G9080-", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "T9095-", "G9096-", "T9098-", "A9099-", "G9100-", "A9101-", "C9102-", "C9103-", "A9104-", "G9105-", "G9106-", "T9107-", "C9108-", "G9110-", "A9111-", "G9112-", "C9113-", "C9114-", "C9115-", "G9116-", "G9117-", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-", "G9127-", "G9128-", "C9129-", "T9130-", "A9131-", "C9133-", "A9134-", "A9135-", "G9136-", "G9137-", "G9138-", "A9139-", "A9140-", "C9141-", "C9142-", "C9143-", "A9144-", "C9145-", "T9146-", "G9147-", "C9148-"], "INT": ["E11D", "I31V", "L45Q", "V165I", "K244E", "D253E", "D256E"], "RT-p51": ["T200A", "K249R", "V276I", "T296S", "V326I", "V329I", "P345S", "K357R", "R390K", "K395R", "T403A"], "RT-p66": ["T200A", "K249R", "V276I", "T296S", "V326I", "V329I", "P345S", "K357R", "R390K", "K395R", "T403A", "R461K"], "gp120": ["D21K", "E34D", "T35P", "E59V", "N71K", "V73A", "Q86E", "N102R", "D105E", "N108-", "T110-", "V126M", "K127R", "T135A", "N158S", "N204K", "H280T", "K309E", "N311H", "E312K", "A318K", "N319D", "E323K", "K329R", "S365N", "T366-", "-378N", "-379N", "-380N", "-381G", "-382T", "-383N", "-384G", "R391K", "I414K", "V418I", "-433N", "N435S", "S453N", "K474R"], "gp41": ["K80Q", "F81L", "N105S", "E109D", "Y127H", "Q130H", "N140D", "E151A", "A156T", "T165S", "I187V", "Q212H", "E220G", "G221E", "G230D", "V235E", "A243T", "S256L", "R276H", "L290I", "G293I", "K297R", "I298T", "L304I", "A306T", "T307I", "L340F"], "nef": ["G3N", "S9-", "I10-", "V11-", "G12-", "P24S", "E28R", "G29Q", "V43I", "R59Q", "Q125H", "I133V", "V148L", "G159E", "M173L", "R178K", "A188S", "L198R"], "p17": ["V7I", "M31L", "T53S", "V82I", "Q90K", "V94I", "K95R", "N109S"], "p2": ["Q6N", "A7V", "N9H", "-11N", "-12V"], "p24": ["V11I", "E79D", "N120S", "S225G"], "p6": ["E13D", "N14D", "I21R", "T22Q", "-23E", "P24Q", "E29P", "Q30P", "K31S", "D32-", "P36-", "P37-", "L38-", "V39-", "P49L"], "pro": ["M46I", "I62V", "L63A", "C67W", "K70R"], "rev": ["I21T", "A31S", "I59V", "S61D", "Q74P", "L83I", "C89S", "V108D", "G111D"], "tat": ["S23N", "K29N", "L36I", "S62R", "K63Q", "K71E", "S77I", "K85E", "E86K"], "vif": ["N22H", "M29I", "F39I", "S46N", "H48N", "E61D", "V65I", "N93T", "R131S", "I159T"], "vpr": ["Y15N", "R36M"], "vpu": ["E5Q", "Y30C", "I33L", "L34Q", "R35K", "Q36E", "A50E", "D62E", "-68M", "V69-", "D80N"]}, "labels": {"aa": "INT: E11D, I31V, L45Q, V165I, K244E, D253E, D256E; RT-p51: T200A, K249R, V276I, T296S, V326I, V329I, P345S, K357R, R390K, K395R, T403A; RT-p66: T200A, K249R, V276I, T296S, V326I, V329I, P345S, K357R, R390K, K395R, T403A, R461K; gp120: D21K, E34D, T35P, E59V, N71K, V73A, Q86E, N102R, D105E, N108-, T110-, V126M, K127R, T135A, N158S, N204K, H280T, K309E, N311H, E312K, A318K, N319D, E323K, K329R, S365N, T366-, -378N, -379N, -380N, -381G, -382T, -383N, -384G, R391K, I414K, V418I, -433N, N435S, S453N, K474R; gp41: K80Q, F81L, N105S, E109D, Y127H, Q130H, N140D, E151A, A156T, T165S, I187V, Q212H, E220G, G221E, G230D, V235E, A243T, S256L, R276H, L290I, G293I, K297R, I298T, L304I, A306T, T307I, L340F; nef: G3N, S9-, I10-, V11-, G12-, P24S, E28R, G29Q, V43I, R59Q, Q125H, I133V, V148L, G159E, M173L, R178K, A188S, L198R; p17: V7I, M31L, T53S, V82I, Q90K, V94I, K95R, N109S; p2: Q6N, A7V, N9H, -11N, -12V; p24: V11I, E79D, N120S, S225G; p6: E13D, N14D, I21R, T22Q, -23E, P24Q, E29P, Q30P, K31S, D32-, P36-, P37-, L38-, V39-, P49L; pro: M46I, I62V, L63A, C67W, K70R; rev: I21T, A31S, I59V, S61D, Q74P, L83I, C89S, V108D, G111D; tat: S23N, K29N, L36I, S62R, K63Q, K71E, S77I, K85E, E86K; vif: N22H, M29I, F39I, S46N, H48N, E61D, V65I, N93T, R131S, I159T; vpr: Y15N, R36M; vpu: E5Q, Y30C, I33L, L34Q, R35K, Q36E, A50E, D62E, -68M, V69-, D80N"}}}]}, {"name": "CRF01_AE_NODE_0000023", "node_attrs": {"div": 0.11626999999999998, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G1661A", "G1794A", "G2023A", "G2630A", "G5385A", "-6203G", "-6958A", "G7734A", "A7735G"], "RT-p51": ["V179I"], "RT-p66": ["V179I"], "p17": ["V107A"], "p6": ["V39I"], "vpr": ["G94S"]}, "labels": {"aa": "RT-p51: V179I; RT-p66: V179I; p17: V107A; p6: V39I; vpr: G94S"}}, "children": [{"name": "CRF01_AE_NODE_0000024", "node_attrs": {"div": 0.12320999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T435A", "G579A", "T655C", "G866A", "C1385T", "-1749T", "A1932G", "T2452A", "G2459A", "A2462G", "G2463A", "G2683A", "C2689T", "G2725A", "G2926A", "G3001A", "A3088G", "G3097A", "C3160A", "A3200G", "T3346C", "C4144T", "T4754C", "G4765A", "G4856A", "A4951G", "T5125C", "A5299G", "G5444A", "T5451C", "T5515C", "G5711A", "G5734A", "T6187G", "A6229T", "T6562C", "A6574T", "A6692C", "G6693A", "T6717C", "A6753G", "G6809A", "A6848G", "-6984C", "-6985A", "A7040G", "A7151G", "A7190G", "A7540G", "A7701G", "G7957A", "C8038G", "C8182A", "C8223T", "A8407G", "A8584T", "T8740C", "A8746T", "G8818A", "A8917G", "T8939C", "A8947T"], "RT-p51": ["E122K", "S123D", "T369A"], "RT-p66": ["E122K", "S123D", "T369A"], "gp120": ["D21E", "N160S", "E240D", "V288A", "K300R", "I332V", "I396V", "S412R", "N446D"], "gp41": ["E133G", "T307I"], "nef": ["Q22R", "E64D", "Y81F", "I133T", "Y135F", "G159E", "E174D", "K192R", "Y202F"], "p17": ["L34I"], "p6": ["-23S"], "pro": ["K45R"], "rev": ["A37T", "L64V", "P112T"], "tat": ["S23N", "Y47H", "G83D"], "vif": ["G60E", "K122R", "I180T", "N186H"], "vpu": ["R35K", "V43I"]}, "labels": {"aa": "RT-p51: E122K, S123D, T369A; RT-p66: E122K, S123D, T369A; gp120: D21E, N160S, E240D, V288A, K300R, I332V, I396V, S412R, N446D; gp41: E133G, T307I; nef: Q22R, E64D, Y81F, I133T, Y135F, G159E, E174D, K192R, Y202F; p17: L34I; p6: -23S; pro: K45R; rev: A37T, L64V, P112T; tat: S23N, Y47H, G83D; vif: G60E, K122R, I180T, N186H; vpu: R35K, V43I"}}, "children": [{"name": "MG989527", "node_attrs": {"div": 0.16446, "accession": "MG989527", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2011.0}, "Strain_name": {"value": "2546340P000FL_Sg"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C467T", "G481A", "C482G", "A492T", "A513C", "A521G", "G524A", "A576T", "C577T", "T583C", "A585G", "C586T", "G615A", "T636C", "T662G", "G665A", "A715C", "A730T", "T774A", "G803A", "G821A", "C830T", "G978A", 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"G6085C", "C6110G", "A6136G", "T6166A", "-6170T", "-6172G", "-6174C", "-6175C", "A6176C", "C6183A", "A6185G", "A6186T", "A6194G", "-6198A", "A6200G", "-6201T", "G6203T", "-6204C", "-6205T", "-6207G", "-6226T", "T6242A", "A6248G", "T6252C", "A6265C", "A6281C", "A6303G", "C6305G", "A6320C", "A6329G", "A6338T", "A6339C", "T6340G", "C6370A", "T6424C", "G6569A", "A6581G", "C6586T", "C6599A", "A6605G", "C6613A", "A6638G", "T6658C", "T6676C", "A6723T", "A6786G", "T6787G", "T6794A", "C6800A", "G6806T", "A6810C", "C6826T", "C6861A", "T6888C", "A6931T", "A6935G", "A6936G", "A6947G", "-6953G", "-6954A", "-6955G", "-6956A", "-6957A", "A6958T", "-6983G", "-6986A", "A6987C", "A6989T", "-6993C", "T6994C", "-6995C", "-6996A", "-6997G", "-6998G", "-6999A", "-7000G", "-7001A", "-7002A", "G7026A", "G7033A", "A7044G", "C7045A", "G7054A", "G7089A", "T7090G", "T7147G", "A7149G", "T7150G", "A7152G", "T7156C", "A7157C", "G7162T", "T7165C", "G7182A", "T7192C", "A7240G", "A7275G", "A7372G", "G7441A", "A7504G", "A7533G", "A7534T", "G7589A", "C7590A", "T7604A", "C7605A", "C7606A", "T7625G", "A7626T", "C7645T", "A7655G", "T7675A", "C7678T", "G7717A", "C7732A", "A7744G", "G7750A", "A7753G", "G7769T", "A7782G", "G7790A", "A7791G", "T7852C", "C7921T", "C7926T", "A7931T", "G7939T", "C7949G", "C7951A", "C7959T", "C7969A", "G7977A", "A7989T", "C8009A", "G8055A", "C8065T", "G8070T", "C8103T", "A8104G", "A8173G", "T8196C", "T8203C", "C8238G", "G8242T", "G8255A", "A8273G", "G8274A", "C8277T", "T8279G", "C8287T", "C8294A", "C8336A", "G8405A", "C8406A", "T8411C", "C8412T", "-8487G", "-8488A", "-8489T", "A8493-", "A8494-", "T8495-", "T8505A", "G8516A", "G8534T", "G8537A", "T8539A", "A8540G", "C8543A", "G8555A", "G8590A", "A8657G", "T8675C", "C8699A", "T8756C", "A8793G", "G8808A", "A8819G", "A8827G", "T8829A", "A8847G", "G8848C", "T8855C", "A8859G", "T8860C", "G8864T", "C8867T", "A8922G", "T9012C", "T9071A", "C9129T", "T9130C", "A9131G", "A9135G"], "INT": ["T21A", "V32I", "N39S", "L101V", "V165I", "E167D", "I203M"], "RT-p51": ["K20R", "V60I", "T135I", "I179T", "G196E", "E248D", "R307G", "P313T", "V326I", "S379G", "R390K", "E404D", "I434V"], "RT-p66": ["K20R", "V60I", "T135I", "I179T", "G196E", "E248D", "R307G", "P313T", "V326I", "S379G", "R390K", "E404D", "I434V", "S447N", "H483Q", "R512K", "V517I"], "gp120": ["N5D", "R18K", "V40I", "H57E", "E59K", "Q77H", "Q86E", "-107T", "-109V", "-111N", "-112D", "-113N", "-114V", "-115S", "-116R", "-117I", "-118R", "E125-", "V126-", "K127-", "S130T", "N132D", "M133T", "K143Q", "K150R", "L151V", "I156L", "N159D", "E239K", "I243V", "L249I", "N251D", "K262E", "Y290F", "N311R", "L314I", "Q316K", "A318S", "K319T", "P336H", "M345T", "K361G", "S365G", "-367E", "-378N", "-379A", "-380T", "-381E", "-382N", "-383N", "-384G", "R391K", "N397R", "R412K", "N432R", "-433G", "N435H", "N437A", "G443E", "K474R"], "gp41": ["K77S", "A96N", "S101K", "Y108V", "I118V", "D143E", "A156S", "N160S", "D163S", "T208I", "T210S", "Q212H", "P216A", "P219L", "G225E", "Q229L", "S251N", "S256I", "A267V", "I298T", "A312G", "V318I", "R324E", "A325V", "W326G", "H331N", "L345I"], "nef": ["P24S", "N49D", "C55S", "G83E", "R151G", "D156N", "N162S", "C163S", "S169A", "M173A", "I194V"], "p1": ["N9S"], "p17": ["G49E", "T53S", "I60L", "T81L", "V82I", "V83A", "T84V", "V94I", "N109K", "K127T", "Y132F"], "p2": ["A7Q", "Q8T"], "p24": ["L15I", "V83I", "P92A", "G116A", "S200T", "A204S"], "p6": ["S3N", "P5L", "I21M", "P24S", "-26Q", "E34D"], "p7": ["K20R"], "pro": ["L10I", "I15V", "K69Q"], "rev": ["E11D", "K20R", "Y23H", "Q24E", "Y28F", "A31S", "T34S", "A54E", "T62A", "L73F", "Q74H", "N86D", "I109V"], "tat": ["E2D", "E9D", "T58P", "D64N", "I69A", "P70R", "K71E", "P73S", "S77I", "N80K", "P81Q", "P84S", "S87*"], "vif": ["F39S", "L59I", "N93D", "S95N", "D117E", "Q127E", "V128I", "R131Y", "R181K", "H186Y"], "vpr": ["P10S", "E13V", "N28H", "N48S", "A93S"], "vpu": ["V10I", "K44E", "D60E", "T61L", "D62S", "E63K", "A65M", "K66E", "L67M", "-68G", "V69D", "E70F", "M71D", "G72H", "D73-", "F74-", "D75-", "P76-", "L82V"]}, "labels": {"aa": "INT: T21A, V32I, N39S, L101V, V165I, E167D, I203M; RT-p51: K20R, V60I, T135I, I179T, G196E, E248D, R307G, P313T, V326I, S379G, R390K, E404D, I434V; RT-p66: K20R, V60I, T135I, I179T, G196E, E248D, R307G, P313T, V326I, S379G, R390K, E404D, I434V, S447N, H483Q, R512K, V517I; gp120: N5D, R18K, V40I, H57E, E59K, Q77H, Q86E, -107T, -109V, -111N, -112D, -113N, -114V, -115S, -116R, -117I, -118R, E125-, V126-, K127-, S130T, N132D, M133T, K143Q, K150R, L151V, I156L, N159D, E239K, I243V, L249I, N251D, K262E, Y290F, N311R, L314I, Q316K, A318S, K319T, P336H, M345T, K361G, S365G, -367E, -378N, -379A, -380T, -381E, -382N, -383N, -384G, R391K, N397R, R412K, N432R, -433G, N435H, N437A, G443E, K474R; gp41: K77S, A96N, S101K, Y108V, I118V, D143E, A156S, N160S, D163S, T208I, T210S, Q212H, P216A, P219L, G225E, Q229L, S251N, S256I, A267V, I298T, A312G, V318I, R324E, A325V, W326G, H331N, L345I; nef: P24S, N49D, C55S, G83E, R151G, D156N, N162S, C163S, S169A, M173A, I194V; p1: N9S; p17: G49E, T53S, I60L, T81L, V82I, V83A, T84V, V94I, N109K, K127T, Y132F; p2: A7Q, Q8T; p24: L15I, V83I, P92A, G116A, S200T, A204S; p6: S3N, P5L, I21M, P24S, -26Q, E34D; p7: K20R; pro: L10I, I15V, K69Q; rev: E11D, K20R, Y23H, Q24E, Y28F, A31S, T34S, A54E, T62A, L73F, Q74H, N86D, I109V; tat: E2D, E9D, T58P, D64N, I69A, P70R, K71E, P73S, S77I, N80K, P81Q, P84S, S87*; vif: F39S, L59I, N93D, S95N, D117E, Q127E, V128I, R131Y, R181K, H186Y; vpr: P10S, E13V, N28H, N48S, A93S; vpu: V10I, K44E, D60E, T61L, D62S, E63K, A65M, K66E, L67M, -68G, V69D, E70F, M71D, G72H, D73-, F74-, D75-, P76-, L82V"}}}, {"name": "JX112821", "node_attrs": {"div": 0.15469, "accession": "JX112821", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2007.0}, "Strain_name": {"value": "GD070059"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C38T", "G43-", "C44-", "T45-", "A46-", "G47-", "C48-", "A49-", "G50-", "G51-", "G52-", "G53-", "A54-", "A55-", "C56-", "C57-", "C58-", "A59-", "C60-", "T61-", "G62-", "C63-", "T64-", "T65-", "A66-", "A67-", "G68-", "C69-", "C70-", "T71-", "C72-", "A73-", "A74-", "T75-", "A76-", "A77-", "A78-", "G79-", "C80-", "T81-", "T82-", "G83-", "C84-", "C85-", "T86-", "T87-", "G88-", "A89-", "G90-", "T91-", "G92-", "C93-", "T94-", "T95-", "A96-", "A97-", "A98-", "G99-", "T213C", "T214G", "T217A", "A389G", "A418C", "G424A", "G425A", "A426T", "G458A", "C471A", "G495A", "A500G", "A509G", "G530A", "T531C", "C535G", "C558A", "A561C", "T572C", "T580C", "C596T", "C602T", "A613G", "T641C", "A645C", "A678C", "G697A", "G706A", "G712A", "C713A", "A714-", "A715-", "A716-", "A968C", "A1046G", "A1259G", "A1339G", "A1350T", "A1391G", "G1394A", "T1427A", "T1451G", "C1453T", "G1589A", "C1610T", "C1615A", "G1697A", "-1745C", "-1753T", "-1756C", "G1760A", "A1776C", "-1783G", "T1791G", "T1795C", "G1855A", "T1986C", "A2032G", "T2053C", "T2077G", "C2095T", "A2119G", "G2222C", "A2233G", "C2236T", "A2239T", "G2248A", "C2335T", "A2592G", "A2593G", "G2602A", "T2632C", "A2641G", "C2644T", "A2680T", "C2694T", "A2902G", "A2919G", "G2921A", "C2978T", "G2980A", "G3016A", "G3019A", "A3027G", "A3082G", "C3222T", "A3279G", "A3292C", "T3472C", "T3535A", "G3617T", "C3649A", "C3712T", "C3751T", "C3843T", "T3856C", "A3866G", "A3985G", "G4012A", "G4060A", "T4126C", "A4156G", "C4204T", "T4216C", "G4276A", "A4382G", "T4537C", "C4690T", "A4694C", "G4697A", "A4774G", "A4806G", "G4855A", "A4865C", "G4900A", "A4916T", "C4977A", "A5000C", "C5018T", "A5046G", "G5060A", "G5065A", "A5142C", "C5149T", "A5159G", "T5209C", "T5237C", "T5251C", "T5263A", "G5272T", "G5312A", "T5412G", "A5447G", "G5448A", "A5462T", "C5478T", "A5494C", "A5602T", "T5695A", "A5696C", "G5699A", "A5703G", "A5704G", "A5718G", "A5784G", "C5787T", "A5848G", "G5872A", "T5884G", "G5893A", "T5899C", "T5911C", "T5917G", "A5957T", "T5971C", "A6024C", "A6030T", "G6088A", "C6116T", "G6128A", "T6148C", "T6160C", "C6165G", "G6167-", "A6168-", "T6169-", "T6171-", "A6173-", "A6177G", "C6180A", "C6181A", "A6182G", "C6183T", "A6186G", "A6191C", "A6192G", "T6193C", "C6196T", "-6198G", "T6199C", "-6201A", "C6202T", "-6204T", "-6205C", "-6207C", "A6208C", "A6209T", "A6211T", "G6212T", "A6214G", "A6215T", "A6216C", "T6217A", "T6219A", "C6222T", "A6225G", "-6226A", "G6227A", "G6230A", "G6234C", "C6263A", "G6267A", "G6283T", "T6328C", "T6340C", "T6373C", "G6376A", "G6392A", "A6425G", "A6456G", "T6457A", "A6489G", "G6532A", "G6575A", "A6604C", "A6649G", "A6654G", "C6669A", "G6726A", "A6734G", "T6735A", "G6764A", "A6797C", "A6819G", "T6828A", "-6830A", "-6831G", "-6832G", "-6833A", "-6834C", "-6835T", "A6836G", "T6838G", "A6839-", "A6840-", "G6841-", "G6906A", "A6913G", "A6932T", "C6951-", "T6952-", "-6957T", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964C", "-6965A", "-6966C", "-6967T", "-6968A", "-6969T", "-6970C", "-6971A", "-6972C", "-6973A", "-6974C", "-6975A", "-6976T", "-6977A", "-6978A", "-6979T", "-6980G", "-6981G", "-6982T", "-6983A", "-6986C", "C6991-", "A6992-", "T6994-", "G7027A", "A7060T", "A7085G", "T7090A", "T7095A", "A7096C", "A7101G", "A7123G", "A7157T", "A7158C", "G7160A", "G7195A", "G7276A", "G7295C", "A7339G", "G7366A", "A7477T", "G7508C", "A7534G", "T7544C", "A7620G", "T7624C", "A7640G", "G7666A", "A7689G", "G7702T", "C7710T", "C7723T", "A7800G", "T7801C", "T7813C", "C7940A", "A7964G", "A8023G", "G8032A", "C8037T", "T8097C", "C8112T", "A8130G", "C8146T", "T8167C", "A8191G", "A8194G", "C8213T", "A8236G", "G8239A", "G8281C", "C8293T", "C8320T", "G8349A", "G8350A", "T8366C", "G8469A", "T8504G", "G8532A", "G8534C", "G8558A", "A8656G", "T8676C", "C8727G", "C8728A", "A8729C", "G8732A", "T8786A", "A8797C", "A8812C", "C8813T", "A8824G", "G8864C", "G8868C", "A8869C", "C8960A", "A8981G", "T9073C", "T9097G"], "INT": ["A23V", "I31V", "I203V"], "RT-p51": ["E43Q", "K166R", "T200I", "K275R", "V276I", "K311R", "A376V", "K395R", "E399D"], "RT-p66": ["E43Q", "K166R", "T200I", "K275R", "V276I", "K311R", "A376V", "K395R", "E399D", "H480Q", "A508S"], "gp120": ["T35S", "H57P", "E59V", "V92I", "D105F", "A106L", "-107S", "N108-", "T110-", "-122E", "-123I", "-124G", "E125N", "V126I", "K127T", "L137I", "R138K", "K143N", "S162N", "V180I", "T191A", "N201R", "K212R", "E241K", "N267S", "S272Y", "R291K", "D294E", "E304K", "K315Q", "K322R", "F325Y", "-326R", "-327T", "N328E", "K329-", "R351K", "T360S", "T366I", "-369N", "-370G", "-371T", "-372I", "-373T", "-374H", "-375N", "-376G", "-377T", "-378H", "-379N", "-380G", "I411V", "I414N", "N416S", "-433D", "N435S", "T436S", "N437K", "M447I", "E481Q"], "gp41": ["V69L", "F81L", "K106R", "N113D", "N129S", "T136I", "N166S", "Q213K", "R221G", "A245V", "L265S", "T270I", "L304F", "W326C"], "nef": ["G3N", "V43I", "D54E", "D64N", "K105R", "P129D", "E152A", "N157T", "N161S", "M173I", "E176P", "C206*"], "p17": ["K28T", "R30K", "M31L", "L46I", "A54T", "S66P", "T67S", "L75I", "K76Q", "V82T", "E93G", "I104L", "T115P", "G121D", "S124N", "S126K", "K127-"], "p2": ["N9Q", "-10V", "-11N"], "p24": ["E79D", "K203R", "T207S"], "p6": ["P24L", "-25P", "K33Q", "H35R", "L38P", "I39T"], "p7": ["T50N"], "pro": ["L63P", "I93M"], "rev": ["A31E", "K39R", "I59V", "P100S", "S107P", "K115E", "N116D"], "tat": ["N12K", "N24R", "K29I", "K40Q", "S77R"], "vif": ["A35V", "K36N", "K63R", "T74A", "R90K", "R105Q", "Q110H", "R131S", "T154A", "R160K", "T188I"], "vpr": ["E13A", "T19A", "Y45H", "V70I"], "vpu": ["Y30T", "R31K", "I33V", "N81D"]}, "labels": {"aa": "INT: A23V, I31V, I203V; RT-p51: E43Q, K166R, T200I, K275R, V276I, K311R, A376V, K395R, E399D; RT-p66: E43Q, K166R, T200I, K275R, V276I, K311R, A376V, K395R, E399D, H480Q, A508S; gp120: T35S, H57P, E59V, V92I, D105F, A106L, -107S, N108-, T110-, -122E, -123I, -124G, E125N, V126I, K127T, L137I, R138K, K143N, S162N, V180I, T191A, N201R, K212R, E241K, N267S, S272Y, R291K, D294E, E304K, K315Q, K322R, F325Y, -326R, -327T, N328E, K329-, R351K, T360S, T366I, -369N, -370G, -371T, -372I, -373T, -374H, -375N, -376G, -377T, -378H, -379N, -380G, I411V, I414N, N416S, -433D, N435S, T436S, N437K, M447I, E481Q; gp41: V69L, F81L, K106R, N113D, N129S, T136I, N166S, Q213K, R221G, A245V, L265S, T270I, L304F, W326C; nef: G3N, V43I, D54E, D64N, K105R, P129D, E152A, N157T, N161S, M173I, E176P, C206*; p17: K28T, R30K, M31L, L46I, A54T, S66P, T67S, L75I, K76Q, V82T, E93G, I104L, T115P, G121D, S124N, S126K, K127-; p2: N9Q, -10V, -11N; p24: E79D, K203R, T207S; p6: P24L, -25P, K33Q, H35R, L38P, I39T; p7: T50N; pro: L63P, I93M; rev: A31E, K39R, I59V, P100S, S107P, K115E, N116D; tat: N12K, N24R, K29I, K40Q, S77R; vif: A35V, K36N, K63R, T74A, R90K, R105Q, Q110H, R131S, T154A, R160K, T188I; vpr: E13A, T19A, Y45H, V70I; vpu: Y30T, R31K, I33V, N81D"}}}]}, {"name": "CRF01_AE_NODE_0000025", "node_attrs": {"div": 0.12018999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A644G", "C771T", "G1313A", "A1601G", "A1701T", "T1792C", "A2629G", "C4198T", "A4860G", "T5147C", "G5561A", "A5587G", "T5636C", "A5718G", "G5775A", "T6072C", "G6085A", "-6174C", "C6190A", "-6198C", "-6204A", "T6213G", "T6242A", "C6318A", "T6322G", "A6330G", "G6693C", "T6758C", "-6953T", "-6954G", "-6955G", "-6956G", "-6974A", "-6975A", "-6976T", "-6977G", "-6979A", "-6996A", "-6997G", "-7001A", "A7148G", "A7149G", "G7269A", "G7295C", "A7583C", "C7597T", "A7626T", "C7926T", "C8092A", "T8164C", "A8191G", "G8349A", "G8794A"], "RT-p51": ["I178M"], "RT-p66": ["I178M"], "gp120": ["V73A", "S130T", "P155Q", "I156M", "S161N", "H280T", "Y302H", "-367W", "-375E", "-376N", "N432G", "R472K", "E481Q"], "gp41": ["T94P", "T208I", "F263L"], "p24": ["P14S"], "p6": ["T8S", "P36-"], "rev": ["V16I", "S106P", "K115E"], "tat": ["S62N", "K71E", "P73S"], "vif": ["Q80H", "R92G", "N93K"], "vpr": ["Y15H"], "vpu": ["V10A"]}, "labels": {"aa": "RT-p51: I178M; RT-p66: I178M; gp120: V73A, S130T, P155Q, I156M, S161N, H280T, Y302H, -367W, -375E, -376N, N432G, R472K, E481Q; gp41: T94P, T208I, F263L; p24: P14S; p6: T8S, P36-; rev: V16I, S106P, K115E; tat: S62N, K71E, P73S; vif: Q80H, R92G, N93K; vpr: Y15H; vpu: V10A"}}, "children": [{"name": "MG989492", "node_attrs": {"div": 0.15472999999999998, "accession": "MG989492", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2012.0}, "Strain_name": {"value": "2543193P000FL_Sc"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T377C", "A388G", "C399A", "G400A", "A419G", "G424A", "A500G", "G524A", "T571A", "T575C", "G592T", "C596T", "A609G", "G614T", "G654A", "T662C", "C672A", "G693A", "G697A", "G706A", "A715C", "A725C", "A887G", "T890C", "G978A", "C983T", "C1013T", "T1037C", "C1060A", "A1090G", "C1098G", "T1229C", "G1232A", "A1265C", "T1296C", "T1334C", "A1343G", "A1437G", "A1442G", "C1444T", "A1499G", "A1526G", "A1562G", "G1640A", "A1740G", "C1744T", "C1750-", "C1751-", "T1752-", "A1754-", "C1755-", "T1784-", "C1785-", "C1786A", "T1787A", "T1790C", "A1839G", "A1846G", "G1852A", "T1954C", "C2095T", "G2224A", "G2273A", "T2315C", "T2443C", "A2519G", "T2527C", "G2530A", "A2592G", "G2602A", "A2623G", "C2694T", "A2699G", "G2704A", "T2723C", "A2743T", "G2869A", "G2921A", "A2950G", "G2957T", "C2978T", "A2995G", "A2998G", "G3001A", "G3010A", "T3049C", "A3061C", "C3067A", "G3085A", "G3162A", "G3192A", "A3258G", "G3264A", "T3358C", "T3535A", "G3538T", "C3542T", "A3607T", "A3625G", "C3628T", "A3651G", "A3682G", "G3685A", "C3751T", "G3787A", "G3859A", "G3869A", "C3977T", "G4145A", "G4151C", "G4243A", "G4276T", "A4279G", "A4420C", "T4670C", "G4677A", "T4678A", "T4701G", "C4728A", "A4774C", "G4786T", "A4826T", "C4857A", "T4883G", "G4949A", "A4976T", "C4977A", "G4978A", "G4981A", "A4990T", "C5006T", "T5062G", "G5066A", "A5167G", "T5203C", "C5221G", "A5233G", "G5236A", "T5237C", "T5314G", "A5355G", "A5357G", "A5400G", "T5412G", "G5418A", "G5437C", "A5447C", "C5482T", "T5515C", "A5525G", "A5548G", "C5559T", "A5570G", "T5600A", "A5602C", "C5612A", "A5613T", "T5679C", "T5695C", "A5696T", "G5699A", "C5713G", "A5719G", "C5727A", "T5827G", "C5834T", "T5840C", "T5851G", "G5864A", "T5929C", "T5941A", "G5972A", "C5980T", "A6024C", "C6025T", "A6066G", "C6067A", "G6076A", "-6170G", "T6171C", "-6172C", "-6175A", "A6176T", "A6177T", "G6179A", "C6181T", "C6183A", "T6184C", "A6185T", "C6189A", "A6195G", "C6196A", "A6197T", "T6199A", "-6201T", "C6202A", "-6205A", "A6206G", "-6207A", "A6208T", "G6218A", "A6220G", "-6226T", "G6234A", "A6251G", "A6254T", "C6263A", "A6273G", "T6301C", "A6311G", "A6323G", "A6339G", "A6359G", "T6445G", "T6460A", "C6499T", "G6550A", "A6581G", "A6605G", "C6632T", "A6638G", "T6745C", "A6752C", "G6788A", "A6790T", "A6791G", "A6799C", "G6809A", "A6814G", "A6818C", "G6823A", "A6932T", "A6935C", "A6936G", "A6937C", "G6940A", "T6952C", "-6957T", "-6971G", "-6972G", "-6973A", "-6978A", "-6980G", "-6981C", "-6982C", "-6983A", "-6984T", "-6985A", "-6986G", "T6988G", "A6989G", "C6991G", "-6993A", "-6995A", "-6998A", "-6999A", "-7000T", "-7002G", "G7004A", "C7008A", "T7009G", "T7014C", "G7027A", "A7151G", "A7152G", "G7160A", "A7161T", "G7168A", "A7183G", "G7212A", "A7234G", "G7291A", "T7321C", "A7402G", "C7463A", "T7466C", "A7542G", "T7544C", "A7574G", "A7607T", "T7609C", "C7642T", "A7676G", "C7684T", "A7693G", "G7700A", "G7702C", "T7708C", "G7750A", "A7862G", "A7885G", "A7931T", "A7967G", "C7984A", "G8006A", "G8008T", "G8032A", "C8038T", "T8047C", "G8061T", "A8069C", "G8070T", "A8093C", "G8145T", "A8173G", "A8204G", "G8234A", "G8254A", "A8288T", "C8291A", "A8323T", "G8350A", "G8354A", "C8406A", "A8407G", "A8432C", "T8495C", "A8531G", "A8584T", "C8684T", "A8688C", "T8711C", "C8715G", "A8717C", "A8744G", "A8750T", "A8762C", "A8795G", "G8805A", "G8808A", "A8814G", "A8827G", "A8861G", "G8864C", "C8867T", "A8917G", "G8936A", "C8937A", "T8939G", "G8983A", "C8992T", "T9097A"], "INT": ["V32I", "A124T", "V126L", "E167D", "K215N"], "RT-p51": ["V60I", "I142V", "K166R", "T200I", "I202V", "V276I", "A288S", "D324E", "R356K", "R366K", "K388R", "R390K"], "RT-p66": ["V60I", "I142V", "K166R", "T200I", "I202V", "V276I", "A288S", "D324E", "R356K", "R366K", "K388R", "R390K", "H480Q", "H483Y", "N519S"], "gp120": ["D4N", "D29E", "V40I", "H57P", "N71R", "-107T", "N108F", "-109T", "T110N", "-111Y", "-112K", "-113N", "-114R", "-115S", "-116I", "-117E", "-118D", "-119I", "-120G", "-121N", "-122M", "-123T", "-124D", "M133V", "T134S", "L137I", "K140R", "I153V", "N157D", "N159T", "N160T", "N169D", "I197M", "D202E", "I243V", "N251D", "L260F", "K262E", "K300Q", "E312N", "T313A", "K315N", "K322Q", "T360S", "K361R", "-368V", "-369G", "-370N", "-371E", "-372A", "-373I", "-374E", "-377K", "-378N", "-383S", "-384S", "T385K", "I387T", "-433G", "T436S", "N437M", "S453N"], "gp41": ["L54M", "K80R", "F81L", "I91V", "T102S", "Y108F", "S125G", "E133N", "I187V", "T210S", "I222V", "V235I", "C253F", "S256L", "I264L", "G281V", "I301V", "V311I", "I329F", "L330I", "L340F"], "nef": ["G3N", "Q22R", "Y81F", "N116H", "Q125D", "R151K", "E155K", "D156N", "K158E", "N162S", "E174D", "K192R", "H199K"], "p17": ["K18R", "R22K", "R30K", "F79Y", "W86L", "I92V", "E93D", "A107I", "Q113K", "A120T", "G121D", "S124N", "K127T", "Q130H"], "p2": ["S5G", "A7V", "N9H", "-11A", "-12N"], "p24": ["V83I", "T110N", "N120S", "P123A"], "p6": ["I21V", "T22M", "P24-", "H35Q", "L38S"], "pro": ["K14R"], "rev": ["R4G", "A15V", "I19V", "Y28F", "N40S", "R53H", "A54S", "S67P", "Q74P", "H82T", "R99S", "I109V"], "tat": ["N12K", "A21P", "N24T", "Y47H", "K50R", "T58A", "H65R"], "vif": ["V31N", "F39V", "H48N", "K63T", "R67I", "Q91K", "D99E", "R130S", "R131N", "R132K", "Y135F", "I159R"], "vpr": ["Y45H", "I84V"], "vpu": ["T2N", "Y30L", "R31K", "Q36E", "K38E", "D40E", "D60E", "T61L", "D62A", "E63K", "A65V", "K66E", "L67M", "-68G", "V69-", "E70-", "M71-", "G72-", "D73-", "F74-", "D75-", "P76-", "W77-", "V78D", "G79V", "N81L", "L82W"]}, "labels": {"aa": "INT: V32I, A124T, V126L, E167D, K215N; RT-p51: V60I, I142V, K166R, T200I, I202V, V276I, A288S, D324E, R356K, R366K, K388R, R390K; RT-p66: V60I, I142V, K166R, T200I, I202V, V276I, A288S, D324E, R356K, R366K, K388R, R390K, H480Q, H483Y, N519S; gp120: D4N, D29E, V40I, H57P, N71R, -107T, N108F, -109T, T110N, -111Y, -112K, -113N, -114R, -115S, -116I, -117E, -118D, -119I, -120G, -121N, -122M, -123T, -124D, M133V, T134S, L137I, K140R, I153V, N157D, N159T, N160T, N169D, I197M, D202E, I243V, N251D, L260F, K262E, K300Q, E312N, T313A, K315N, K322Q, T360S, K361R, -368V, -369G, -370N, -371E, -372A, -373I, -374E, -377K, -378N, -383S, -384S, T385K, I387T, -433G, T436S, N437M, S453N; gp41: L54M, K80R, F81L, I91V, T102S, Y108F, S125G, E133N, I187V, T210S, I222V, V235I, C253F, S256L, I264L, G281V, I301V, V311I, I329F, L330I, L340F; nef: G3N, Q22R, Y81F, N116H, Q125D, R151K, E155K, D156N, K158E, N162S, E174D, K192R, H199K; p17: K18R, R22K, R30K, F79Y, W86L, I92V, E93D, A107I, Q113K, A120T, G121D, S124N, K127T, Q130H; p2: S5G, A7V, N9H, -11A, -12N; p24: V83I, T110N, N120S, P123A; p6: I21V, T22M, P24-, H35Q, L38S; pro: K14R; rev: R4G, A15V, I19V, Y28F, N40S, R53H, A54S, S67P, Q74P, H82T, R99S, I109V; tat: N12K, A21P, N24T, Y47H, K50R, T58A, H65R; vif: V31N, F39V, H48N, K63T, R67I, Q91K, D99E, R130S, R131N, R132K, Y135F, I159R; vpr: Y45H, I84V; vpu: T2N, Y30L, R31K, Q36E, K38E, D40E, D60E, T61L, D62A, E63K, A65V, K66E, L67M, -68G, V69-, E70-, M71-, G72-, D73-, F74-, D75-, P76-, W77-, V78D, G79V, N81L, L82W"}}}, {"name": "AB703616", "node_attrs": {"div": 0.15827, "accession": "AB703616", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "IR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10IR.THR48F"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T422C", "A426T", "A513T", "A548G", "T583C", "A645C", "T655C", "A661C", "G686A", "G687A", "A725G", "T774C", "A785G", "G866T", "C875T", "A926G", "T992G", "A1017G", "G1019A", "C1040T", "G1078C", "G1173A", "T1181C", "T1182C", "A1226G", "G1268A", "C1280T", "G1328A", "A1350T", "T1358C", "A1442C", "G1443A", "T1451G", "-1458A", "-1459T", "-1460A", "A1461C", "A1463G", "G1472A", "A1529G", "C1541T", "A1656-", "A1657-", "C1658-", "A1694G", "A1709G", "A1743G", "-1747C", "-1748T", "-1749C", "C1751T", "T1752C", "-1753G", "-1756G", "A1758-", "A1759-", "G1760-", "C1761-", "A1762-", "G1763-", "G1764-", "A1765-", "G1766-", "C1767-", "A1768-", "G1769-", "A1770-", "A1771-", "A1772-", "G1773-", "A1774-", "C1775-", "A1776-", "G1779C", "A1781T", "-1783C", "G1845A", "A1857G", "G1963A", "A2012G", "A2026G", "T2087C", "A2127C", "A2140T", "T2158C", "G2222A", "C2263T", "G2311A", "A2314G", "C2326T", "C2420T", "C2511A", "G2542A", "G2610A", "A2611G", "A2641C", "A2710G", "G2727A", "T2735C", "G2808A", "G2828A", "A2842G", "A2846C", "G2847A", "C2848T", "G2909C", "C2930T", "T2935C", "C2944T", "A2974G", "G3019A", "A3046C", "A3151G", "G3208A", "C3253T", "C3352T", "T3355C", "C3485A", "A3489G", "G3523A", "T3559C", "A3611C", "C3649A", "A3697C", "C3751A", "G3769A", "T3799C", "A3866G", "A3891G", "G3937A", "T3967C", "G3989A", "T4126C", "C4144T", "C4288T", "T4291C", "A4407G", "G4459A", "A4492C", "A4522G", "T4691C", "C4725T", "A4726G", "G4736A", "C4757T", "C4761A", "G4802A", "C4820T", "A4826C", "T4827C", "T4832A", "C4889T", "A4895T", "C4937A", "T4938A", "A4950G", "A4951G", "C4965A", "G4978C", "T4985C", "T5003C", "G5059A", "G5065A", "G5087A", "A5090G", "G5128A", "C5146T", "T5162C", "A5167C", "C5168T", "T5182C", "C5214A", "C5239T", "A5249C", "C5250A", "T5251G", "A5360T", "A5431C", "C5438T", "A5462T", "G5545C", "G5566A", "A5575G", "A5644G", "G5711A", "G5712T", "G5730A", "A5733G", "G5734A", "A5748T", "T5793G", "C5802T", "T5808G", "T5847C", "T5851C", "T5911C", "T5917A", "T5953G", "T5964C", "G5965A", "C5989T", "C6023T", "C6026T", "A6065C", "A6066C", "T6151C", "G6167A", "T6169A", "-6170T", "-6172G", "A6173G", "-6175C", "A6182T", "T6187C", "C6189T", "A6192C", "T6193C", "C6196T", "A6197G", "T6199C", "A6200T", "-6201C", "C6202T", "-6205C", "-6207T", "A6209C", "-6226G", "T6241C", "A6261T", "A6266C", "G6267A", "A6282G", "G6283A", "T6287C", "T6298C", "A6311T", "A6326G", "A6327G", "G6333A", "G6336A", "A6339C", "G6346A", "T6364C", "G6392A", "G6451A", "G6463A", "A6465G", "T6466G", "T6487C", "A6489C", "A6508G", "A6520G", "A6535G", "G6547A", "A6571G", "A6648C", "T6688G", "-6697G", "A6703-", "C6713A", "A6734G", "T6735A", "A6779G", "A6825G", "-6833A", "-6834A", "-6835T", "T6838A", "A6839G", "A6840C", "G6841T", "T6849A", "C6850A", "C6861A", "C6862T", "A6881G", "A6931C", "-6957G", "-6959A", "-6960A", "-6961T", "-6962A", "-6963G", "-6964A", "-6965A", "-6966C", "-6967G", "-6968G", "-6969A", "-6970A", "-6971A", "-6972A", "-6973T", "-6978G", "A6987-", "T6988-", "A6990C", "-6993T", "T6994A", "-6995G", "-6998G", "-6999G", "-7000G", "-7002A", "C7012T", "T7018C", "G7026A", "G7056A", "G7058A", "A7085G", "T7090C", "G7106T", "A7138T", "G7142A", "G7143C", "T7147A", "T7150A", "T7153A", "A7161G", "A7164C", "T7165A", "G7182C", "C7238G", "T7622A", "T7627G", "G7631C", "T7656C", "G7658C", "C7678T", "A7688G", "C7690A", "C7732A", "A7741G", "G7759A", "T7801A", "A7840G", "T7919C", "T7936C", "G7957A", "G7992A", "A8002G", "A8011C", "G8019C", "C8033A", "C8080A", "G8085A", "A8093G", "T8094C", "A8105G", "G8137T", "T8171G", "T8172C", "G8180A", "T8205G", "A8288C", "G8329A", "T8332A", "A8348G", "C8369T", "C8390T", "A8403G", "G8404A", "A8408G", "T8483C", "A8517G", "G8518A", "G8529A", "A8531C", "G8534A", "G8588A", "T8603C", "G8666C", "T8675C", "T8685C", "C8699A", "C8771T", "G8774A", "C8790A", "C8791G", "A8793C", "A8801G", "G8804A", "A8809C", "A8859C", "T8860A", "T8887G", "A8922G", "A8942T", "T8974C", "C8975T"], "INT": ["I31V", "N39S", "V72I", "K211R"], "RT-p51": ["K11T", "E43K", "T139K", "R172K", "Q182H", "S211N", "F214L", "R238K", "E245K", "S251H", "A272P"], "RT-p66": ["K11T", "E43K", "T139K", "R172K", "Q182H", "S211N", "F214L", "R238K", "E245K", "S251H", "A272P", "Q464K", "K465R", "I506L"], "gp120": ["D21E", "H33Q", "V37A", "H57Y", "N71P", "D105K", "A106L", "-107G", "-109V", "-111E", "K127R", "E136V", "R138Q", "K143R", "Y145H", "I153L", "N158G", "N159S", "S162T", "V180I", "N204R", "K212T", "E265A", "S278R", "I281M", "Q287K", "D294E", "K309E", "K319E", "H324R", "-327N", "N328K", "K329A", "I332K", "P336H", "I343V", "-368G", "-369N", "-370R", "-371T", "-377N", "-378G", "-379T", "-380I", "-381E", "-382G", "-383N", "-384G", "R391K", "G401E", "A402T", "I411V", "V418L", "R428S", "G430T", "-433K", "T436G", "N437T", "G443A", "Q462E"], "gp41": ["S107T", "Y108L", "E110Q", "I118T", "E119Q", "N129E", "D143E", "N166K", "F206L", "G230D", "S239T", "L244I", "R261K", "I264A", "T268A", "L290A", "G293S", "I301S", "I329L"], "nef": ["G3S", "R21E", "R59E", "E108D", "Y115H", "P150R", "R151Q", "D156A", "M173Q", "M182R", "I194V"], "p1": ["N9-"], "p17": ["M31L", "I60L", "V83A", "I104L", "N109T", "A118T"], "p2": ["Q6H", "A7T", "N9Q", "-10A", "-11N", "-12I", "I13L"], "p24": ["E45D", "H87Q", "M96V", "G116A", "V148I", "T207S"], "p6": ["T22A", "K27-", "Q28-", "E29-", "Q30-", "K31-", "D32-", "K33-", "E34-", "H35-", "P37-", "L38-", "I39-"], "pro": ["G16E", "K20R", "I72V"], "rev": ["E10D", "S30P", "A37T", "I52V", "I55L", "E57D", "T62D", "L78I", "H82S", "N86S", "V97L", "V108G", "G111E"], "tat": ["T19P", "A21V", "N24K", "K29I", "G57R", "D64N", "N67D", "I76T", "G83D"], "vif": ["Q47W", "L59I", "D117E", "S118T", "K122G", "Q127K", "R131P", "R158K", "R160K", "R181K", "P187L"], "vpr": ["E21D", "P37H", "T49Q"], "vpu": ["I13V", "R35N", "V43I", "R47S", "D62E"]}, "labels": {"aa": "INT: I31V, N39S, V72I, K211R; RT-p51: K11T, E43K, T139K, R172K, Q182H, S211N, F214L, R238K, E245K, S251H, A272P; RT-p66: K11T, E43K, T139K, R172K, Q182H, S211N, F214L, R238K, E245K, S251H, A272P, Q464K, K465R, I506L; gp120: D21E, H33Q, V37A, H57Y, N71P, D105K, A106L, -107G, -109V, -111E, K127R, E136V, R138Q, K143R, Y145H, I153L, N158G, N159S, S162T, V180I, N204R, K212T, E265A, S278R, I281M, Q287K, D294E, K309E, K319E, H324R, -327N, N328K, K329A, I332K, P336H, I343V, -368G, -369N, -370R, -371T, -377N, -378G, -379T, -380I, -381E, -382G, -383N, -384G, R391K, G401E, A402T, I411V, V418L, R428S, G430T, -433K, T436G, N437T, G443A, Q462E; gp41: S107T, Y108L, E110Q, I118T, E119Q, N129E, D143E, N166K, F206L, G230D, S239T, L244I, R261K, I264A, T268A, L290A, G293S, I301S, I329L; nef: G3S, R21E, R59E, E108D, Y115H, P150R, R151Q, D156A, M173Q, M182R, I194V; p1: N9-; p17: M31L, I60L, V83A, I104L, N109T, A118T; p2: Q6H, A7T, N9Q, -10A, -11N, -12I, I13L; p24: E45D, H87Q, M96V, G116A, V148I, T207S; p6: T22A, K27-, Q28-, E29-, Q30-, K31-, D32-, K33-, E34-, H35-, P37-, L38-, I39-; pro: G16E, K20R, I72V; rev: E10D, S30P, A37T, I52V, I55L, E57D, T62D, L78I, H82S, N86S, V97L, V108G, G111E; tat: T19P, A21V, N24K, K29I, G57R, D64N, N67D, I76T, G83D; vif: Q47W, L59I, D117E, S118T, K122G, Q127K, R131P, R158K, R160K, R181K, P187L; vpr: E21D, P37H, T49Q; vpu: I13V, R35N, V43I, R47S, D62E"}}}]}]}]}]}]}, {"name": "CRF01_AE_NODE_0000026", "node_attrs": {"div": 0.11199999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G458A", "A2127C", "A5587G", "G6167A", "-6172G", "-6198C", "-6201A", "T6217A", "C6263A", "G6392A", "G6693C", "-7007A", "-7008C", "G7195A", "A7534G"], "RT-p51": ["K11T"], "RT-p66": ["K11T"], "gp120": ["D105N", "L137I", "V180I", "M447I"], "gp41": ["K144R"], "nef": ["M173I"], "tat": ["K71E"]}, "labels": {"aa": "RT-p51: K11T; RT-p66: K11T; gp120: D105N, L137I, V180I, M447I; gp41: K144R; nef: M173I; tat: K71E"}}, "children": [{"name": "CRF01_AE_NODE_0000027", "node_attrs": {"div": 0.11360999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G424A", "C1322T", "G1452A", "T1741C", "-1753C", "G2023A", "A4826C", "A6024C", "T6193C", "-6204C", "A6208T", "-6225A", "A6581G", "A6791G", "A7931T", "G7977A", "T8701A"], "gp120": ["H57P", "S162E", "I243V", "H280-", "V288-", "I332S"], "gp41": ["G225E"], "nef": ["F120Y"], "p17": ["R30K", "I104M", "G121S"], "p6": ["I21T"], "rev": ["Y28F"], "tat": ["K24N"], "vif": ["Q80H"]}, "labels": {"aa": "gp120: H57P, S162E, I243V, H280-, V288-, I332S; gp41: G225E; nef: F120Y; p17: R30K, I104M, G121S; p6: I21T; rev: Y28F; tat: K24N; vif: Q80H"}}, "children": [{"name": "AY358056", "node_attrs": {"div": 0.13873, "accession": "AY358056", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2001.0}, "Strain_name": {"value": "OUR647I"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A431G", "C471A", "A492T", "A613G", "A647G", "G696A", "T824C", "G866A", "G978A", "G1127A", "G1253A", "T1296C", "A1367G", "A1370G", "A1382T", "G1394A", "A1442T", "C1444T", "A1448G", "G1472A", "A1480T", "A1670G", "G1687A", "C1693T", "A1742C", "A1743-", "C1744-", "A1754C", "A1772G", "T1795C", "A1894C", "T1903A", "A1927G", "A2007G", "C2095T", "C2113A", "C2236T", "A2254G", "C2263T", "T2393C", "T2452C", "G2456C", "C2521T", "A2677G", "T2679A", "C2694T", "A2698G", "A2710G", "G2761A", "G2993C", "A3027G", "A3043G", "G3085A", "C3140T", "T3184C", "A3200G", "G3208A", "C3266T", "A3279G", "G3398A", "G3427A", "T3433C", "A3562G", "C3589T", "C3649T", "T3721A", "A3775C", "C3823T", "T3850A", "T3857C", "A3937G", "C3970T", "C4210T", "G4464A", "C4501T", "A4552T", "G4582A", "A4694C", "G4802A", "A4864C", "A4951G", "G5059A", "G5066A", "T5072A", "G5195A", "G5212A", "C5234G", "C5250A", "A5291T", "A5355T", "A5357G", "C5384T", "T5412G", "G5437C", "G5448T", "C5454T", "A5462T", "C5482A", "G5620C", "A5721G", "C5727T", "T5851G", "G5907A", "G5965A", "C5989A", "C6004T", "G6029A", "T6046C", "G6076A", "G6133A", "A6164G", "T6169A", "-6170G", "-6174C", "-6175T", "T6181C", "T6187C", "C6189G", "C6190G", "A6194G", "C6196T", "A6197G", "C6198A", "A6200G", "A6201T", "-6203C", "-6205T", "-6207G", "T6208C", "A6215-", "A6216-", "A6217G", "C6222T", "G6224T", "-6226A", "G6227C", "A6229G", "G6230A", "A6232G", "G6234A", "A6263G", "G6267A", "A6279G", "T6287C", "A6302G", "G6323A", "T6325A", "A6329G", "G6336C", "A6338G", "-6340G", "T6385C", "T6445A", "G6463A", "A6574C", "G6575A", "G6577A", "G6628A", "G6716A", "T6717C", 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"T8690C", "C8699T", "A8717G", "C8727T"], "INT": ["D25E", "S230N"], "RT-p51": ["D6E", "D121H", "I195K", "T200I", "E300Q", "K311R", "T369A", "K395R", "V435I"], "RT-p66": ["D6E", "D121H", "I195K", "T200I", "E300Q", "K311R", "T369A", "K395R", "V435I"], "gp120": ["R18K", "E59K", "T104D", "N105K", "-107K", "-109V", "-111N", "-112R", "-113N", "-114D", "-115D", "-116V", "-117P", "-118S", "-119I", "-120V", "I137V", "R138K", "Q142R", "Y145H", "K150E", "E157K", "N159G", "N160E", "S161T", "E240D", "E241K", "-280T", "-288T", "K300Q", "I305V", "G307K", "K309E", "N311K", "E312G", "T313V", "K315T", "K319E", "N327-", "-328N", "T330N", "P336S", "K361Q", "S365E", "-367C", "-368L", "-384D", "I387T", "I411V", "N432D", "-433V", "T436D", "N437T", "T439I"], "gp41": ["I92V", "K106R", "Y108F", "M115L", "Q130K", "N166S", "T208I", "T210F", "H212R", "R218S", "S239T", "L265S", "A268T", "V311T", "G313E", "A325V", "R327G", "A343T"], "nef": ["G3S", "A27T", "D38E", "E63D", "E64D", "R71K", "K105R", "P129S"], "p17": ["L46I", "T53S", "E93G"], "p2": ["Q6H", "A7V", "Q8T"], "p24": ["V83I"], "p6": ["S3N", "P5L", "T22S", "V39L"], "p7": ["N5I"], "pro": ["D35E", "K70R"], "rev": ["A37S", "A54K", "E57D", "T62S", "S86N", "S106P"], "tat": ["P3L", "N12K", "A21P", "K29I", "L36I", "P73S", "P75S", "I77V", "G83V", "S87*"], "vif": ["K36N", "N93T", "K122R", "R158K"], "vpr": ["V31I", "Q44E", "T49N", "I63F", "I84L"], "vpu": ["E5Q", "L82V"]}, "labels": {"aa": "INT: D25E, S230N; RT-p51: D6E, D121H, I195K, T200I, E300Q, K311R, T369A, K395R, V435I; RT-p66: D6E, D121H, I195K, T200I, E300Q, K311R, T369A, K395R, V435I; gp120: R18K, E59K, T104D, N105K, -107K, -109V, -111N, -112R, -113N, -114D, -115D, -116V, -117P, -118S, -119I, -120V, I137V, R138K, Q142R, Y145H, K150E, E157K, N159G, N160E, S161T, E240D, E241K, -280T, -288T, K300Q, I305V, G307K, K309E, N311K, E312G, T313V, K315T, K319E, N327-, -328N, T330N, P336S, K361Q, S365E, -367C, -368L, -384D, I387T, I411V, N432D, -433V, T436D, N437T, T439I; gp41: I92V, K106R, Y108F, 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{"aa": "INT: E11D, N39S; RT-p66: H483Y; gp120: N160S, R391K; p6: L24S, -25L; vif: L59I, K63I, R131H"}}, "children": [{"name": "CRF01_AE_NODE_0000029", "node_attrs": {"div": 0.12220999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A470G", "A599G", "C1280T", "A1718G", "G1732A", "G1963A", "G1969A", "G2164A", "A2422G", "A2693G", "A2884G", "T2953C", "G3016A", "G3316A", "T3566C", "A3684G", "G3952A", "C4076A", "G4078A", "A4303G", "A4916C", "A5142T", "A5548C", "A5560C", "T5695G", "A5718G", "G5734A", "G5739A", "A5784G", "A5790-", "G5791-", "T5793A", "G5799T", "C5806A", "-5811T", "A5817G", "G6179C", "T6181C", "A6195T", "-6207C", "-6226G", "G6253A", "A6333G", "A6574T", "C6599A", "A6759T", "C6792T", "A6935C", "T6952A", "T6953-", "-6973T", "-6976T", "T7090G", "A7095T", "A7148G", "A7149G", "A7158G", "G7160A", "A7161C", "C7164A", "G7168A", "G7212A", "A7541C", "G7666A", "A7688G", "A7689G", "G7700A", "A7721G", "A7755C", "G7790A", "G8234A", "G8518A", "C8684T", "A8739G", "A8873C", "T8980-", "G8982-", "G8983-"], "INT": ["L101I"], "RT-p51": ["T200A"], "RT-p66": ["T200A", "S491P", "K530R"], "gp120": ["A106L", "-118R", "E157D", "E240D", "L249I", "Y302F", "T313V", "S412R", "K414I", "N432G", "S453N"], "gp41": ["K80Q", "N129G", "E133K", "N140D", "E151A"], "nef": ["E177D"], "rev": ["E11D"], "tat": ["T58P", "S62R"], "vif": ["Q110H"], "vpr": ["E13V"], "vpu": ["F30A", "V43I"]}, "labels": {"aa": "INT: L101I; RT-p51: T200A; RT-p66: T200A, S491P, K530R; gp120: A106L, -118R, E157D, E240D, L249I, Y302F, T313V, S412R, K414I, N432G, S453N; gp41: K80Q, N129G, E133K, N140D, E151A; nef: E177D; rev: E11D; tat: T58P, S62R; vif: Q110H; vpr: E13V; vpu: F30A, V43I"}}, "children": [{"name": "MN792331", "node_attrs": {"div": 0.16227999999999998, "accession": "MN792331", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2010.0}, "Strain_name": {"value": "40257v09_03"}, "LANL_subtype": {"value": "CRF01_AE"}}, 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"T9072-", "T9073-", "T9074-", "C9075-", "G9076-", "C9077-", "T9078-", "T9079-", "G9080-", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "T9095-", "G9096-", "G9097-", "T9098-", "A9099-", "G9100-", "A9101-", "C9102-", "C9103-", "A9104-", "G9105-", "G9106-", "T9107-", "C9108-", "G9110-", "A9111-", "G9112-", "C9113-", "C9114-", "C9115-", "G9116-", "G9117-", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-", "G9127-", "G9128-", "C9129-", "T9130-", "A9131-", "G9132-", "C9133-", "A9134-", "A9135-", "G9136-", "G9137-", "G9138-", "A9139-", "A9140-", "C9141-", "C9142-", "C9143-", "T9150G"], "INT": ["A23V", "D25E", "K103R", "R136Q", "E138D"], "RT-p51": ["V179I", "R238K", "E245V", "A272G", "I292V", "A304E", "D324E", "R390K", "M403T"], "RT-p66": ["V179I", "R238K", "E245V", "A272G", "I292V", "A304E", "D324E", "R390K", "M403T", "V531I"], "gp120": ["E34S", "Q77H", "-107S", "-109L", "-111M", "-112P", "-113N", "-114V", "-115S", "-116I", "-117G", "E125-", "V126-", "K127-", "M133T", "K143R", "P155Q", "N158K", "N159D", "S161N", "E162N", "I180V", "T191A", "P210Q", "K224R", "N251D", "T255N", "N267T", "T269I", "I279M", "-280T", "-288V", "D294E", "K300Q", "E304Y", "G307K", "N311T", "E312K", "K315E", "A318V", "K319G", "K322G", "-326T", "T330S", "S332N", "Q334T", "P335Q", "I343V", "K361Q", "S365T", "-384D", "T385H", "K391R", "K393R", "G401E", "I415V", "V418T", "-433G", "N435R", "T439I", "G443I", "I447M", "K448R", "I468V"], "gp41": ["M7L", "I92L", "S101T", "D143E", "D163N", "T210Y", "E220G", "Q229H", "G230D", "I264S", "A267V", "A268V", "L290S", "Q294R", "V311T", "A343T"], "nef": ["S8R", "I10K", "V11E", "G12E", "Q35K", "D36E", "D38A", "V43I", "M48I", "A53D", "D54A", "V56T", "R59K", "E108D", "Q125H", "I133V", "V153T", "N157S", "G159E", "N162S", "S169N", "E176P", "A188S", "C206*", "*207R"], "p1": ["N9H"], "p17": ["M31L", "L34I", "A54T", "Q112K", "T115V", "S121A", "S126G", "K127E", "V128I", "Q130H"], "p2": ["Q8T", "M14L"], "p24": ["P14S", "A78V", "V83L", "N120S"], "p6": ["S3N", "P5L", "G18K", "K31R", "K33N", "E34P", "H35P", "P36-", "L38S"], "p7": ["K10R", "R11N"], "pro": ["K14R", "I15V"], "rev": ["F28L", "A37T", "A54E", "T68A", "H82Q", "K115E"], "tat": ["P3L", "N7K", "Q17R", "A21P", "N24K", "K29Q", "Y47H", "P75T", "P81Q", "G83D", "K85E"], "vif": ["K36N", "Q47R", "V51I", "I59L", "I63T", "R67I", "N93R", "S95R", "Y111H", "R132E", "K176N", "P177L", "N186C"], "vpr": ["A4P", "N48Y", "R62T", "I63F", "S96P"], "vpu": ["I13V", "V14I", "L16A", "A27F", "A30V", "R31K", "K32R", "L34Q", "R37K", "R47S", "E58D", "E63D", "P76H"]}, "labels": {"aa": "INT: A23V, D25E, K103R, R136Q, E138D; RT-p51: V179I, R238K, E245V, A272G, I292V, A304E, D324E, R390K, M403T; RT-p66: V179I, R238K, E245V, A272G, I292V, A304E, D324E, R390K, M403T, V531I; gp120: E34S, Q77H, -107S, -109L, -111M, -112P, -113N, -114V, -115S, -116I, -117G, E125-, V126-, K127-, M133T, K143R, P155Q, N158K, N159D, S161N, E162N, I180V, T191A, P210Q, K224R, N251D, T255N, N267T, T269I, I279M, -280T, -288V, D294E, K300Q, E304Y, G307K, N311T, E312K, K315E, A318V, K319G, K322G, -326T, T330S, S332N, Q334T, P335Q, I343V, K361Q, S365T, -384D, T385H, K391R, K393R, G401E, I415V, V418T, -433G, N435R, T439I, G443I, I447M, K448R, I468V; gp41: M7L, I92L, S101T, D143E, D163N, T210Y, E220G, Q229H, G230D, I264S, A267V, A268V, L290S, Q294R, V311T, A343T; nef: S8R, I10K, V11E, G12E, Q35K, D36E, D38A, V43I, M48I, A53D, D54A, V56T, R59K, E108D, Q125H, I133V, V153T, N157S, G159E, N162S, S169N, E176P, A188S, C206*, *207R; p1: N9H; p17: M31L, L34I, A54T, Q112K, T115V, S121A, S126G, K127E, V128I, Q130H; p2: Q8T, M14L; p24: P14S, A78V, V83L, N120S; p6: S3N, P5L, G18K, K31R, K33N, E34P, H35P, P36-, L38S; p7: K10R, R11N; pro: K14R, I15V; rev: F28L, A37T, A54E, T68A, H82Q, K115E; tat: P3L, N7K, Q17R, A21P, N24K, K29Q, Y47H, P75T, P81Q, G83D, K85E; vif: K36N, Q47R, V51I, I59L, I63T, R67I, N93R, S95R, Y111H, R132E, K176N, P177L, N186C; vpr: A4P, N48Y, R62T, I63F, S96P; vpu: I13V, V14I, L16A, A27F, A30V, R31K, K32R, L34Q, R37K, R47S, E58D, E63D, P76H"}}}, {"name": "MN486035", "node_attrs": {"div": 0.15897999999999998, "accession": "MN486035", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "BE"}, "date": {"value": 2017.0}, "Strain_name": {"value": "CM"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["-162G", "-163A", "-166A", "G256-", "A303T", "T362C", "A368G", "A374G", "C393A", "A424G", "G579A", "A604G", "G614T", "G615A", "T636C", "A645T", "G650A", "T655A", "T662G", "C694T", "G696A", "C710T", "C722T", "G770A", "C771G", "T774C", "G803A", "T827C", "C872T", "A899G", "A968C", "T979C", "G1022A", "C1115A", "A1205G", "T1322C", "G1394A", "C1444T", "G1472A", "G1474A", "G1487A", "C1490A", "A1492C", "G1493A", "T1501G", "-1503A", "-1504T", "-1505T", "A1643G", "A1644C", "A1670G", "G1673A", "A1735G", "G1760A", "T1787C", "C1826T", "G1835A", "G1845A", "A1857G", "T1903G", "C1913T", "A1920G", "T1986C", "C2057A", "A2075C", "G2117A", "G2156A", "A2254G", "G2273A", "C2302A", "C2326T", "A2329G", "G2332A", "A2344G", "A2368G", "A2389C", "A2566G", "A2579T", "A2593G", "C2653T", "G2705C", "G2755A", "G2764A", "G2878A", "G2932A", "G3037A", "A3082T", "A3124G", "G3221T", "A3229G", "A3292G", "C3294T", "T3346C", "C3550T", "T3577C", "A3583G", "C3610T", "C3628T", "C3823T", "G3877A", "C3908T", "C3977T", "A4051G", "G4237C", "G4243A", "C4258T", "G4276A", "C4471T", "A4531G", "A4694G", "T4702G", "T4706C", "A4709G", "T4712C", "T4738C", "C4761A", "A4775C", "A4781G", "T4793C", "T4799C", "C4820T", "A4863G", "T4868C", "G4870A", "C4871T", "C4914T", "G4968A", "T4985C", "T5003C", "G5030A", "C5034T", "G5036A", "A5038G", "A5049G", "G5065A", "T5072C", "T5078C", "A5200G", "C5215T", "T5228C", "C5234G", "G5236A", "G5257A", "T5292C", "T5319A", "T5356G", "G5375A", "G5382C", "G5444A", "G5448T", "A5462G", "A5463T", "G5499A", "G5587A", "G5619A", "C5641G", "C5687G", "T5696C", "A5704C", "C5707T", "G5711A", "C5727T", "A5760G", "-5791T", "A5792G", "G5794T", "A5795G", "T5797C", "C5801G", "A5803C", "T5807C", "G5812A", "T5844G", "A5848G", "T5885C", "T5917G", "A5945C", "T5964C", "G5965A", "C5968T", "A5983G", "C5998T", "C6007T", "C6024G", "G6035A", "C6067A", "T6072C", "G6088A", "T6155A", "A6157G", "A6159C", "-6170G", "G6172T", "A6173-", "A6188G", "C6190T", "C6192A", "C6193T", "A6194C", "-6205T", "A6209T", "T6210C", "A6211C", "G6212A", "A6216T", "A6219C", "A6220T", "A6221C", "C6222T", "G6224T", "A6225G", "A6273G", "A6275G", "A6276C", "G6277A", "C6278G", "G6280A", "A6281G", "G6283A", "G6284T", "T6285C", "C6286T", "A6292C", "C6293T", "T6301C", "A6309C", "T6310A", "T6325C", "A6338G", "-6340G", "T6347A", "C6363G", "G6442A", "A6443C", "A6489G", "G6532A", "T6556C", "C6586T", "G6588A", "C6613A", "A6649G", "T6668G", "C6669G", "A6686G", "A6689G", "A6767G", "A6786G", "T6787G", "A6798C", "C6807A", "T6808G", "G6809A", "-6834A", "A6848T", "T6888C", "A6900T", "T6922C", "C6938T", "G6940A", "A6947T", "T6949C", "-6953A", "G6954A", "-6955C", "-6956A", "-6957A", "-6958C", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "-6964C", "-6965A", "-6966T", "-6967G", "-6968T", "-6970T", "-6972A", "-6974G", "-6975G", "A6989-", "A6990-", "C6991-", "A6992-", "T6994-", "G7026A", "A7085G", "T7114C", "A7138G", "T7150G", "T7153A", "T7162G", "A7256T", "A7258G", "A7275G", "A7373T", "A7375G", "T7516C", "G7517C", "T7544C", "G7589A", "C7590A", "A7630T", "A7640G", "A7641G", "A7696T", "T7715G", "T7748C", "G7769A", "A7791G", "T7825C", "T7865G", "C7898A", "A7964G", "C7984A", "A8011C", "C8038T", "A8076G", "C8092A", "T8164C", "T8171A", "T8218C", "T8221C", "G8264A", "A8299T", "T8302A", "G8304C", "A8305T", "A8306C", "G8329A", "C8342T", "A8370C", "A8407G", "A8409G", "A8426C", "A8446G", "A8471G", "A8478G", "T8505A", "G8506A", "T8507A", "G8516A", "A8517G", "A8531G", "T8740A", "C8741A", "G8753A", "G8774A", "C8789T", "G8794A", "G8804A", "G8827A", "G8864T", "C8869A", "A8870C", "A8933G", "A8947T", "A8970C", "A8978C", "-8980A", "A8981G", "C8985A", "T8986C", "-8988T", "C9068T", "-9109A", "C9115T", "C9129A"], "INT": ["M154I"], "RT-p51": ["V8I", "V21I", "V60I", "S162C", "E204Q", "A376S", "T400I"], "RT-p66": ["V8I", "V21I", "V60I", "S162C", "E204Q", "A376S", "T400I"], "gp120": ["Y11H", "D21E", "K31Q", "V37A", "P57R", "V61I", "V73A", "L101M", "N102T", "-107T", "-109A", "T110N", "-111L", "-112T", "-114A", "-115T", "-116S", "-119N", "-120I", "-121A", "-122D", "K127R", "M133I", "K140R", "K141A", "K143E", "V144S", "L147F", "D152A", "L165I", "T170S", "I197L", "K212R", "R245K", "S272G", "S278G", "I279-", "I281-", "G284-", "P285-", "G286-", "Q287-", "F289-", "Y290V", "R291T", "T292I", "D294P", "I305V", "N311R", "K315T", "A318E", "-328N", "S332F", "M345T", "N349I", "S365C", "-367N", "-378N", "-379N", "-380G", "-382C", "-383N", "-384G", "I411V", "-433T", "N435S", "I468L", "K474R"], "gp41": ["I24L", "M54L", "V72L", "F81L", "A96N", "E109D", "N113G", "S138A", "A156T", "D163S", "F188V", "Q199K", "T210S", "R221G", "H258R", "F263L", "L290I", "V311I", "V321I", "R334T"], "nef": ["I10L", "Q22R", "T23A", "E28D", "Q35R", "S46G", "C55K", "R59E", "Y81F", "Y102H", "I133E", "R151K", "E174D", "E176D", "Y202F"], "p17": ["K30R", "V82I", "Q90R", "E93D", "V94I", "M104L", "V107E", "N109K", "A120V"], "p2": ["A7V", "-10T", "-11N"], "p24": ["P14A", "E79D", "V83A", "D128E"], "p6": ["G18E", "E19G"], "p7": ["R3K", "Q9P", "I12S", "-13I"], "pro": ["L10F", "V13I", "G16E", "K20R", "D35E", "P39S", "K41R", "L63P", "I93L"], "rev": ["K39R", "I55L", "T62S", "H82N", "S106P", "V108D"], "tat": ["E2D", "S23N", "K29S", "E71K"], "vif": ["F39C", "V51A", "N93E", "S95N", "H110Y", "V128I", "K151R", "T155A", "R160K", "N186Y"], "vpr": ["Q44E", "I63T", "F72Y", "I84R", "A93P"], "vpu": ["L12V", "A27G", "I33L", "R35K", "V69-", "N81D"]}, "labels": {"aa": "INT: M154I; RT-p51: V8I, V21I, V60I, S162C, E204Q, A376S, T400I; RT-p66: V8I, V21I, V60I, S162C, E204Q, A376S, T400I; gp120: Y11H, D21E, K31Q, V37A, P57R, V61I, V73A, L101M, N102T, -107T, -109A, T110N, -111L, -112T, -114A, -115T, -116S, -119N, -120I, -121A, -122D, K127R, M133I, K140R, K141A, K143E, V144S, L147F, D152A, L165I, T170S, I197L, K212R, R245K, S272G, S278G, I279-, I281-, G284-, P285-, G286-, Q287-, F289-, Y290V, R291T, T292I, D294P, I305V, N311R, K315T, A318E, -328N, S332F, M345T, N349I, S365C, -367N, -378N, -379N, -380G, -382C, -383N, -384G, I411V, -433T, N435S, I468L, K474R; gp41: I24L, M54L, V72L, F81L, A96N, E109D, N113G, S138A, A156T, D163S, F188V, Q199K, T210S, R221G, H258R, F263L, L290I, V311I, V321I, R334T; nef: I10L, Q22R, T23A, E28D, Q35R, S46G, C55K, R59E, Y81F, Y102H, I133E, R151K, E174D, E176D, Y202F; p17: K30R, V82I, Q90R, E93D, V94I, M104L, V107E, N109K, A120V; p2: A7V, -10T, -11N; p24: P14A, E79D, V83A, D128E; p6: G18E, E19G; p7: R3K, Q9P, I12S, -13I; pro: L10F, V13I, G16E, K20R, D35E, P39S, K41R, L63P, I93L; rev: K39R, I55L, T62S, H82N, S106P, V108D; tat: E2D, S23N, K29S, E71K; vif: F39C, V51A, N93E, S95N, H110Y, V128I, K151R, T155A, R160K, N186Y; vpr: Q44E, I63T, F72Y, I84R, A93P; vpu: L12V, A27G, I33L, R35K, V69-, N81D"}}}]}, {"name": "CRF01_AE_NODE_0000030", "node_attrs": {"div": 0.11834999999999998, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G697A", "G2273A", "A2881G", "G3685A", "C4761A", "C5168T", "T5333C", "G5668A", "C5713G", "T5851G", "G5956T", "A6201C", "T6213A", "-6226T", "T6849C", "A6856G", "-6960A", "-6962A", "G7026A", "T8032G", "C8213T", "G8239A", "G8404A", "G8666T", "G8753A", "G8848A"], "RT-p51": ["V60I"], "RT-p66": ["V60I"], "gp120": ["E34D", "-379N"], "gp41": ["L304F"], "nef": ["R21K", "Y81F", "Y102H", "E108D", "S169N"], "p17": ["S121D"], "rev": ["T62A"], "vpu": ["V21I", "Q36E", "L82V"]}, "labels": {"aa": "RT-p51: V60I; RT-p66: V60I; gp120: E34D, -379N; gp41: L304F; nef: R21K, Y81F, Y102H, E108D, S169N; p17: S121D; rev: T62A; vpu: V21I, Q36E, L82V"}}, "children": [{"name": "JX447316", "node_attrs": {"div": 0.15116, "accession": "JX447316", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2006.0}, "Strain_name": {"value": "AA056a_WG5"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C127G", "T128A", "G130T", "T131A", "C134-", "T135-", "A136-", "G137-", "A138-", "G139-", "A140-", "T141-", "C142-", "C143-", "C144-", "T145-", "C146-", "A147-", "G148-", "A149-", "C150-", "C151-", "A152-", "C153-", "T154-", "C155-", "T156-", "A157-", "G158-", "A159-", "C160-", "T161-", "G164-", "T165-", "A168-", "A169-", "T396C", "A419G", "T456C", "A521C", "C535A", "A576G", "A609T", "A611T", "A647G", "G654A", "G667A", "C668T", "G706A", "C731T", "A833T", "A860G", "A899G", "C983T", "A1089G", "A1090G", "T1094C", "C1098G", "G1127A", "G1139A", "C1220T", "G1232A", "A1250G", "G1253A", "A1256G", "C1304A", "G1313A", "A1337G", "G1388A", "T1451G", "A1464C", "A1492C", "G1493A", "C1535T", "A1544G", "G1640A", "A1664G", "A1718G", "A1736G", "G1737-", "A1738-", "G1739-", "A1740-", "C1741-", "A1742-", "C1745A", "-1746A", "-1747C", "-1748C", "G1766A", "C1826A", "G1912A", "G1968A", "T2093C", "G2215A", "A2227G", "G2311A", "G2350A", "C2353T", "C2464T", "A2519G", "T2527C", "A2629G", "C2635A", "A2692G", "C2694G", "A2710G", "T2824C", "G2828A", "G2920A", "C2941T", "G3001A", "A3028G", "T3034G", "G3085A", "C3223T", "T3262C", "A3280G", "G3435A", "T3535C", "G3553A", "T3566G", "C3567T", "A3637G", "A3724G", "G3766A", "G3796A", "A3961G", "C4076A", "G4078A", "G4145A", "A4219G", "G4237A", "A4306G", "A4420C", "C4471T", "C4534T", "A4558C", "G4616A", "T4742C", "A4766G", "A4775C", "A4815C", "A4865T", "G4870A", "A4877G", "A4916T", "T4995C", "A5045G", "T5102C", "T5147C", "C5221T", "T5228C", "A5235G", "A5246G", "T5286C", "G5289A", "T5293C", "G5312A", "T5319A", "C5351T", "G5385A", "A5400T", "A5447C", "T5451C", "C5454T", "A5462T", "A5555C", "A5581G", "A5611T", "G5619A", "A5644G", "G5652A", "C5653G", "T5654C", "A5680T", "T5684C", "T5708G", "A5715G", "G5717A", "A5719C", "G5839A", "G5856A", "T5857G", "C5866T", "A5867G", "T5887C", "C5924T", "T5964C", "G5972A", "C6024A", "C6039T", "C6067A", "T6142C", "-6170T", "-6174T", "-6175T", "A6176G", "G6179A", "T6180C", "T6181A", "A6185C", "T6187A", "A6188G", "A6191C", "C6196T", "T6199A", "C6204A", "-6205A", "-6207T", "T6208G", "A6217T", "G6218A", "A6219T", "A6249G", "G6304A", "C6305A", "T6312C", "C6317T", "A6324G", "T6325A", "A6333G", "T6337G", "A6338G", "-6340G", "T6466G", "G6475A", "C6586T", "C6618T", "C6629A", "T6694C", "T6720G", "C6721G", "G6743A", "A6751G", "G6764A", "A6785T", "A6789C", "A6810G", "A6818G", "G6821A", "A6833C", "-6834C", "A6848T", "C6857T", "C6860T", "T6888C", "G6889A", "A6926G", "A6947G", "G6948A", "C6951G", "-6955C", "-6956A", "-6957T", "-6958G", "-6959A", "-6961A", "-6963A", "-6964T", "-6965C", "-6966C", "-6967G", "-6968C", "-6970G", "-6972G", "-6973A", "-6978A", "-6979G", "-6980G", "-6981G", "-6982G", "-6983T", "-6984G", "-6985T", "-6986A", "-6987A", "-6988T", "-6993C", "A7007-", "C7008-", "T7009-", "T7075C", "A7095G", "T7150G", "A7151T", "T7153A", "A7154G", "T7156A", "A7157G", "T7159G", "T7162A", "G7182C", "G7212A", "G7289C", "A7306G", "G7441A", "T7444A", "G7456A", "T7622A", "G7631C", "A7640G", "A7646T", "T7656C", "G7658C", "G7666A", "T7708C", "C7710T", "G7720A", "A7763C", "C7792T", "A7800G", "T7801G", "T7843C", "A7847G", "A7862T", "A7885G", "T7919C", "C7932T", "T7939G", "G7973A", "C8092A", "A8099G", "T8101G", "A8130G", "G8219A", "A8236G", "T8257G", "C8268T", "C8277T", "C8291A", "C8311T", "C8320A", "C8336A", "T8366C", "A8423G", "G8469A", "G8486A", "G8508A", "G8516A", "A8517G", "A8540G", "G8555A", "G8590C", "T8636A", "A8656G", "G8682A", "A8688C", "T8690C", "A8701T", "A8795G", "T8800C", "A8812C", "G8834A", "C8867T", "G8868A", "G8894A", "C8906T", "A8917G", "A8924G", "T8939C", "A8950T", "A8981G", "A9026G", "T9073C"], "INT": ["L101I", "A124T", "M154I", "K215N", "V281M"], "RT-p51": ["I142V", "I178M", "T200R", "E245K"], "RT-p66": ["I142V", "I178M", "T200R", "E245K", "S447N", "S491V"], "gp120": ["S1K", "N5D", "V37A", "V40I", "P57H", "T62I", "N71K", "N105S", "-107N", "-109I", "-111D", "K127R", "N132S", "L151I", "I153T", "P155S", "E157G", "S161R", "N204K", "T255I", "H259N", "I281-", "G284-", "P285-", "G286-", "Q287-", "F289-", "Y290-", "R291T", "T292I", "D294P", "D297N", "E304K", "N311Y", "E312A", "T313A", "K319G", "K322E", "E323K", "-326P", "P335S", "P336S", "M345T", "N358D", "S365D", "T366S", "-367C", "-368M", "-369K", "-370N", "-376G", "-377C", "-378N", "-380T", "T385-", "K414R", "N432K", "-433S", "N434E", "N435E", "T436E", "G443A", "S453N", "E479Q"], "gp41": ["M54L", "S107T", "E110Q", "N113D", "M115L", "I118T", "E119Q", "T136I", "K154Q", "N166R", "I182V", "I187F", "F206L", "T210F", "H212Q", "E224K", "F263L", "I266V", "A306T", "A322V", "A325V", "L330I", "L345I"], "nef": ["V43I", "M48I", "V56I", "R59G", "G83A", "D98E", "K105R", "V114I", "N116H", "Y120F", "V153A", "N157T", "N162S", "E176T", "K192R", "I194M", "Y203F"], "p17": ["E62D", "T67N", "T81A", "I92F", "V107I", "S111N", "S124N"], "p2": ["Q8T", "M14L"], "p24": ["N120G", "P123A"], "p6": ["E20-", "T21-", "S23T", "L25S", "-26L"], "p7": ["Q9P"], "pro": ["L10I", "R57K", "F99L"], "rev": ["S31A", "R42K", "H82N", "D84G", "C85G"], "tat": ["N24T", "K29I", "Q60P", "I69V", "P75S", "I77S"], "vif": ["K77Q", "S95N", "Q110H", "S137P"], "vpr": ["Y15H", "Q44R", "N48D", "I61T", "R62K", "V70I", "F72Y", "G94S"], "vpu": ["T2S", "I13V", "L16A", "I25L", "V26A", "L34R", "R37K", "K38Q", "V78I"]}, "labels": {"aa": "INT: L101I, A124T, M154I, K215N, V281M; RT-p51: I142V, I178M, T200R, E245K; RT-p66: I142V, I178M, T200R, E245K, S447N, S491V; gp120: S1K, N5D, V37A, V40I, P57H, T62I, N71K, N105S, -107N, -109I, -111D, K127R, N132S, L151I, I153T, P155S, E157G, S161R, N204K, T255I, H259N, I281-, G284-, P285-, G286-, Q287-, F289-, Y290-, R291T, T292I, D294P, D297N, E304K, N311Y, E312A, T313A, K319G, K322E, E323K, -326P, P335S, P336S, M345T, N358D, S365D, T366S, -367C, -368M, -369K, -370N, -376G, -377C, -378N, -380T, T385-, K414R, N432K, -433S, N434E, N435E, T436E, G443A, S453N, E479Q; gp41: M54L, S107T, E110Q, N113D, M115L, I118T, E119Q, T136I, K154Q, N166R, I182V, I187F, F206L, T210F, H212Q, E224K, F263L, I266V, A306T, A322V, A325V, L330I, L345I; nef: V43I, M48I, V56I, R59G, G83A, D98E, K105R, V114I, N116H, Y120F, V153A, N157T, N162S, E176T, K192R, I194M, Y203F; p17: E62D, T67N, T81A, I92F, V107I, S111N, S124N; p2: Q8T, M14L; p24: N120G, P123A; p6: E20-, T21-, S23T, L25S, -26L; p7: Q9P; pro: L10I, R57K, F99L; rev: S31A, R42K, H82N, D84G, C85G; tat: N24T, K29I, Q60P, I69V, P75S, I77S; vif: K77Q, S95N, Q110H, S137P; vpr: Y15H, Q44R, N48D, I61T, R62K, V70I, F72Y, G94S; vpu: T2S, I13V, L16A, I25L, V26A, L34R, R37K, K38Q, V78I"}}}, {"name": "JX447081", "node_attrs": {"div": 0.14859999999999998, "accession": "JX447081", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2005.0}, "Strain_name": {"value": "AA033a_wg6a"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["-162G", "-163A", "-166A", "G256A", "T258-", "C260T", "A261G", "A265G", "G279A", "-280G", "A303T", "-304T", "A426C", "T435A", "A458G", "C471A", "T485C", "A581G", "T583C", "A585G", "C586T", "C596T", "G614A", "G615A", "A658G", "C679A", "C707T", "C713T", "A815G", "A854T", "G956A", "T974C", "G1022A", "C1280T", "A1442G", "A1452-", "C1453-", "A1454-", "A1455G", "A1456C", "T1457C", "-1458A", "-1459A", "-1460T", "A1461G", "G1508A", "C1511T", "A1592T", "A1642G", "A1643G", "A1644C", "T1646G", "G1673A", "C1692A", "A1781C", "A1783C", "C1853A", "A2023G", "A2056G", "G2173A", "A2398G", "G2401A", "A2404G", "A2431G", "C2485T", "T2499C", "A2515G", "A2566G", "A2593G", "T2613A", "A2614G", "A2665C", "G2704A", "T2735C", "A2743C", "T2800C", "G2808A", "A2830C", "G2833A", "G2869A", "C2885T", "G2914A", "C2968T", "G3094A", "C3129A", "A3163G", "T3181C", "A3279G", "T3303C", "T3328C", "A3388G", "G3438A", "G3442A", "G3473A", "T3496C", "T3545C", "T3551C", "A3571G", "G3715A", "T3742C", "C3751T", "G3787A", "C3823T", "T3865C", "A3866G", "G3877A", "C3908T", "A3937G", "A3949C", "G3989A", "G4060A", "T4075C", "C4126T", "G4178A", "G4182A", "C4204T", "T4543C", "T4656A", "G4697A", "T4702C", "C4752T", "A4784C", "G4859A", "A4865C", "A4900G", "C4911A", "A4951G", "A4976G", "A4994G", "A5004C", "T5028C", "C5047T", "C5052T", "G5060A", "T5072C", "C5146T", "A5148T", "G5176A", "T5245C", "C5250A", "A5290G", "T5293A", "A5355G", "A5357G", "A5421G", "C5425A", "G5448T", "A5462G", "T5515C", "A5548C", "A5599C", "A5611C", "C5612T", "C5687G", "G5699A", "G5711A", "A5718G", "T5857A", "G5893A", "A5908G", "A5957C", "C5984T", "C6004T", "T6139C", "T6154C", "T6166C", "-6170G", "T6171C", "G6172T", "-6174A", "-6175G", "T6180A", "C6189T", "A6195T", "C6196G", "T6199C", "C6202T", "-6205C", "A6206T", "-6207A", "T6210A", "A6215C", "A6216T", "C6222A", "A6225G", "G6234A", "G6260T", "A6261T", "A6263C", "G6267C", "T6271C", "T6287C", "A6303G", "T6322A", "A6327G", "A6329C", "T6331G", "A6339G", "-6340T", "A6443C", "G6481A", "G6503A", "G6547A", "G6581A", "C6678G", "C6693G", "T6694G", "G6716A", "T6717C", "A6734G", "T6735A", "A6736C", "A6752C", "A6759T", "A6779G", "G6791A", "A6798G", "C6807T", "G6809A", "-6834T", "G6841A", "C6850A", "T6853C", "T6863A", "T6943C", "-6955G", "-6961C", "-6963G", "-6964G", "-6965A", "-6966A", "-6967A", "-6968T", "-6970A", "-6972A", "-6973C", "-6974C", "-6975A", "-6976T", "-6977G", "-6978G", "-6979A", "-6988A", "C6991G", "A6992G", "-6993G", "-6995A", "-6996G", "-6997T", "-6998G", "-6999G", "-7000C", "-7001A", "-7002A", "-7003T", "-7004A", "-7005A", "-7006C", "G7027A", "G7054A", "T7059C", "A7155C", "C7165T", "C7170T", "A7256G", "G7276A", "G7291T", "C7463A", "A7552G", "A7570C", "A7607T", "T7609C", "T7615C", "A7689G", "A7721G", "T7747G", "A7796T", "A7798G", "T7825C", "T7833C", "C7874T", "T7931A", "G7992A", "A7998G", "A8011C", "G8030C", "C8031A", "C8037T", "A8050C", "T8164C", "C8182T", "T8196C", "A8222G", "C8223T", "A8273G", "T8279G", "A8305G", "A8309G", "A8348G", "A8370G", "C8406A", "A8484-", "T8485-", "G8486-", "-8490G", "-8491T", "-8492G", "T8505A", "G8528A", "A8531G", "T8603C", "A8655C", "C8684T", "T8711C", "C8741T", "A8744G", "C8775T", "G8794C", "G8799A", "A8826G", "A8844G", "G8846A", "G8864A", "G8875A", "A8918G", "A8970G", "C9018T", "G9132A"], "INT": ["I31V", "V72I", "V135I", "R136Q"], "RT-p51": ["I135T", "I173K", "F214L", "R238K", "E245D", "P345Q", "K395R", "M403T"], "RT-p66": ["I135T", "I173K", "F214L", "R238K", "E245D", "P345Q", "K395R", "M403T", "R448K", "D460N"], "gp120": ["S1R", "T35P", "H44Y", "-107K", "-109D", "-111N", "-112T", "-124G", "E136L", "I137L", "R138T", "Y145H", "K150R", "N158D", "N159S", "S160Q", "S161N", "E162S", "I197L", "V217I", "V243I", "T275R", "-280R", "-288T", "K300Q", "Y302F", "K309E", "K315R", "A318V", "-326I", "S332T", "S337T", "-367W", "-380N", "V402A", "N432R", "-433T", "N437T", "T439I", "I468V", "E479D"], "gp41": ["T102S", "N129S", "N140D", "D148E", "T165S", "I177T", "L191F", "G230D", "D232G", "A243Q", "A245V", "R277L", "I298T", "T307V", "R324G", "W326G", "I336V"], "nef": ["I10V", "Q22K", "M48V", "C55S", "K105Q", "R151T", "V153I", "N162G", "M168V", "E176A", "R178K"], "p1": ["K4R", "I5L"], "p17": ["M31L", "L34I", "L46I", "V83A", "T84V", "V94I", "M104I", "Q108R", "T115K"], "p2": ["N9H", "-11A", "-12N", "I13V"], "p6": ["P5T", "E34D", "H35P"], "p7": ["E42D"], "pro": ["L19M"], "rev": ["E11D", "F28Y", "I55L", "S61T", "T68P", "S106P", "P112S"], "tat": ["Q17K", "K29R", "Y47H", "T58P"], "vif": ["L24I", "F39S", "H56Y", "Q105R", "L109I", "K122R", "N140H", "T154I", "P156S", "P187L", "T188S"], "vpr": ["Y15F", "T49N", "I84V"], "vpu": ["T2L", "A27G", "R31K", "R35K"]}, "labels": {"aa": "INT: I31V, V72I, V135I, R136Q; RT-p51: I135T, I173K, F214L, R238K, E245D, P345Q, K395R, M403T; RT-p66: I135T, I173K, F214L, R238K, E245D, P345Q, K395R, M403T, R448K, D460N; gp120: S1R, T35P, H44Y, -107K, -109D, -111N, -112T, -124G, E136L, I137L, R138T, Y145H, K150R, N158D, N159S, S160Q, S161N, E162S, I197L, V217I, V243I, T275R, -280R, -288T, K300Q, Y302F, K309E, K315R, A318V, -326I, S332T, S337T, -367W, -380N, V402A, N432R, -433T, N437T, T439I, I468V, E479D; gp41: T102S, N129S, N140D, D148E, T165S, I177T, L191F, G230D, D232G, A243Q, A245V, R277L, I298T, T307V, R324G, W326G, I336V; nef: I10V, Q22K, M48V, C55S, K105Q, R151T, V153I, N162G, M168V, E176A, R178K; p1: K4R, I5L; p17: M31L, L34I, L46I, V83A, T84V, V94I, M104I, Q108R, T115K; p2: N9H, -11A, -12N, I13V; p6: P5T, E34D, H35P; p7: E42D; pro: L19M; rev: E11D, F28Y, I55L, S61T, T68P, S106P, P112S; tat: Q17K, K29R, Y47H, T58P; vif: L24I, F39S, H56Y, Q105R, L109I, K122R, N140H, T154I, P156S, P187L, T188S; vpr: Y15F, T49N, I84V; vpu: T2L, A27G, R31K, R35K"}}}]}]}]}, {"name": "CRF01_AE_NODE_0000031", "node_attrs": {"div": 0.11271999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A1670G", "A2629G", "T6148C", "-6170T", "-6175C", "C6183A", "T6187C", "-6204T", "-6205A", "-6207G", "T6210A", "A6211T", "G6212A", "A6216C", "A6221G", "C6222A", "G6227-", "A6228-", "A6229-", "G6230-", "C6318A", "G7160A", "A7735G"], "RT-p51": ["I178M"], "RT-p66": ["I178M"], "gp120": ["P155Q"], "gp41": ["M54L"]}, "labels": {"aa": "RT-p51: I178M; RT-p66: I178M; gp120: P155Q; gp41: M54L"}}, "children": [{"name": "CRF01_AE_NODE_0000032", "node_attrs": {"div": 0.11377999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G803A", "T4754C", "-6203A", "A6220T", "A6339G", "-6340T", "-6971A"], "gp120": ["-111N", "-113N", "A318T", "-371T"], "nef": ["C55S"], "p6": ["-25P"], "rev": ["T62S"]}, "labels": {"aa": "gp120: -111N, -113N, A318T, -371T; nef: C55S; p6: -25P; rev: T62S"}}, "children": [{"name": "CRF01_AE_NODE_0000033", "node_attrs": {"div": 0.11735, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T662G", "T1451G", "A1525G", "T1583C", "-1745C", "T2499C", "T2638C", "C2694T", "A3651G", "A3866G", "A3937G", "A4860G", "A5159G", "G5312A", "G5448T", "G5699A", "G5739A", "-6174C", "A6197C", "A6206G", "T6460G", "A6810G", "-6955G", "-6956A", "-6957T", "-6958A", "-6959A", "-6960A", "-6961T", "-6963G", "-6965A", "-6966C", "-6970G", "-6973A", "-6974A", "-6978A", "-6979A", "G7026A", "A7148G", "A7626T", "A7689G", "G7702C", "T7939C", "G7957A", "T8172C", "C8223T", "A8273G", "G8421A", "A8584T"], "INT": ["I31V"], "RT-p51": ["I135T", "T200I"], "RT-p66": ["I135T", "T200I", "N519S"], "gp120": ["-112T", "D202E", "H280-", "R291T", "K319G", "-367W", "-368I", "-369N", "-375E", "R391K"], "gp41": ["Y108F", "N129S", "E133D", "L290S", "T307I", "R324G"], "nef": ["A27T", "Y81F"], "p17": ["N109K"], "p2": ["N9Q"], "p7": ["K20R"], "rev": ["S31P", "A37T"], "tat": ["K24N", "I77T", "G83D"], "vpr": ["T19A", "V70I"], "vpu": ["R31K", "D40E"]}, "labels": {"aa": "INT: I31V; RT-p51: I135T, T200I; RT-p66: I135T, T200I, N519S; gp120: -112T, D202E, H280-, R291T, K319G, -367W, -368I, -369N, -375E, R391K; gp41: Y108F, N129S, E133D, L290S, T307I, R324G; nef: A27T, Y81F; p17: N109K; p2: N9Q; p7: K20R; rev: S31P, A37T; tat: K24N, I77T, G83D; vpr: T19A, V70I; vpu: R31K, D40E"}}, "children": [{"name": "AY945712", "node_attrs": {"div": 0.14196999999999999, "accession": "AY945712", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99TH_C1080"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A368G", "A380T", "A388G", "T479C", "C535A", "C558T", "A562G", "G579A", "A604G", "T636A", "A647G", "G697A", "G747T", "A812G", "C1040T", "A1090G", "C1115A", "A1124G", "G1199A", "G1253A", "C1440A", "C1491A", "G1493A", "A1494G", "A1495G", "A1497-", "G1498-", "A1499-", "-1503A", "-1504T", "-1505T", "C1658G", "A1659G", "A1660G", "G1661A", "G1673A", "A1700C", "T1741C", "-1753C", "A1768C", "C1775A", "A1776C", "G1778T", "G1779-", "A1780-", "A1781-", "A1783C", "T1792C", "T1796C", "A1857G", "A1861G", "G2023A", "G2042A", "A2075C", "A2126T", "A2212G", "C2236T", "C2263T", "G2273A", "A2297G", 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"T6340G", "T6364C", "T6445C", "G6451A", "A6573G", "G6577A", "A6679G", "A6689G", "A6748T", "C6807T", "-6833C", "-6834C", "-6835T", "T6849G", "C6850A", "T6853C", "T6883C", "G6910T", "A6913G", "A6935C", "T6949C", "-6962A", "-6964T", "-6967T", "-6968G", "-6969G", "-6972T", "-6980G", "-6981A", "-6982G", "-6983T", "-6984A", "-6985T", "-6986A", "-6987A", "-6988T", "A6989G", "-6993C", "C7008T", "T7009C", "C7012A", "A7013T", "T7014A", "A7015T", "G7033A", "T7090G", "A7151G", "A7152C", "C7165A", "G7168A", "G7269A", "G7456A", "C7597T", "C7606T", "G7631C", "C7642T", "T7801G", "T7843C", "G7868A", "T7913G", "C7950A", "G7977A", "T8032G", "C8038G", "C8071T", "T8171A", "G8180A", "C8213T", "A8228G", "A8348G", "C8351T", "A8378C", "G8404A", "G8454A", "T8505A", "G8558A", "A8688C", "C8715G", "A8717C"], "INT": ["R20K", "T21A", "L28I", "L45V", "R136Q", "E167D"], "RT-p51": ["T11S", "V60I", "S68G", "S123N", "T165I", "M178I", "K259R", "I274V"], "RT-p66": ["T11S", "V60I", "S68G", "S123N", "T165I", "M178I", "K259R", "I274V", "S447N", "L452I", "T470S"], "gp120": ["R18K", "V37A", "V40I", "H57Y", "L58M", "V80I", "P96H", "N102S", "N105-", "A106-", "-109V", "N111L", "-114V", "-115N", "-116Y", "-117T", "-118N", "-119N", "-120F", "-121P", "-122N", "-123I", "-124G", "E125N", "V126I", "K127T", "M133V", "L151T", "I156M", "N159T", "S161N", "E240G", "I279-", "I281-", "G284-", "P285-", "G286-", "Q287-", "V288-", "F289-", "Y290V", "T292I", "D294P", "T318V", "-326P", "I332R", "K361Q", "-370S", "-372G", "-373I", "-374K", "-376Y", "-377N", "-384D", "S412R", "N432D", "-433A", "T436N", "N437T", "R472K"], "gp41": ["E110Q", "N166K", "A189T", "L204V", "P216H", "G225E", "S290T", "G293S", "L304F", "I309V"], "nef": ["R21K", "D38N", "E65D", "N116H", "Q125D"], "p1": ["N9K", "K10G"], "p17": ["K18R", "T67N", "L75F", "K76R", "V82I", "Q90R", "L101I", "I104M", "G121D"], "p2": ["Q6K", "-11A", "-12N"], "p24": ["A6S", "N120S", "D128E"], "p6": ["I21T", "L24S", "P25L", "Q30P", "K31-", "D32-", "L38P", "V39S"], "p7": ["Q9K", "K10G", "R11I"], "pro": ["K20R", "V82I", "I93L"], "rev": ["I18T", "K20R", "S62A", "L64V", "V108D", "G111E"], "tat": ["I45L", "Y47H", "K63T", "Q66P", "N67H", "I69L", "P81T"], "vif": ["G60E", "R92G", "N93R", "S95R", "R131Y", "R160K", "I180R", "R181-"], "vpr": ["D7E", "Q8-", "E25D", "T49N", "I63T", "I84L", "N91H"], "vpu": ["V10A", "A27I", "Q36E"]}, "labels": {"aa": "INT: R20K, T21A, L28I, L45V, R136Q, E167D; RT-p51: T11S, V60I, S68G, S123N, T165I, M178I, K259R, I274V; RT-p66: T11S, V60I, S68G, S123N, T165I, M178I, K259R, I274V, S447N, L452I, T470S; gp120: R18K, V37A, V40I, H57Y, L58M, V80I, P96H, N102S, N105-, A106-, -109V, N111L, -114V, -115N, -116Y, -117T, -118N, -119N, -120F, -121P, -122N, -123I, -124G, E125N, V126I, K127T, M133V, L151T, I156M, N159T, S161N, E240G, I279-, I281-, G284-, P285-, G286-, Q287-, V288-, F289-, Y290V, T292I, D294P, T318V, -326P, I332R, K361Q, -370S, -372G, -373I, -374K, -376Y, -377N, -384D, S412R, N432D, -433A, T436N, N437T, R472K; gp41: E110Q, N166K, A189T, L204V, P216H, G225E, S290T, G293S, L304F, I309V; nef: R21K, D38N, E65D, N116H, Q125D; p1: N9K, K10G; p17: K18R, T67N, L75F, K76R, V82I, Q90R, L101I, I104M, G121D; p2: Q6K, -11A, -12N; p24: A6S, N120S, D128E; p6: I21T, L24S, P25L, Q30P, K31-, D32-, L38P, V39S; p7: Q9K, K10G, R11I; pro: K20R, V82I, I93L; rev: I18T, K20R, S62A, L64V, V108D, G111E; tat: I45L, Y47H, K63T, Q66P, N67H, I69L, P81T; vif: G60E, R92G, N93R, S95R, R131Y, R160K, I180R, R181-; vpr: D7E, Q8-, E25D, T49N, I63T, I84L, N91H; vpu: V10A, A27I, Q36E"}}}, {"name": "AY358061", "node_attrs": {"div": 0.14144, "accession": "AY358061", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2000.0}, "Strain_name": {"value": "OUR746I"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A386G", "A462C", "C471G", "G519A", "T531C", "C535G", "G542T", "G614T", "A645C", "G665A", "A675G", "C723T", "A725C", "A779C", "G791A", "C830T", "C875T", "G977A", "T1004A", "A1097T", "G1129A", "C1247T", "T1334C", "T1344C", "A1415T", "G1452A", "A1456C", "A1538T", "C1610T", "G1619A", "G1670A", "C1692A", "A1719G", "T1729G", "A1736G", "-1753T", "T1756C", "A1762G", "A1781G", "A1819G", "A1832C", "G1845C", "A1918G", "T1978A", "G2173A", "G2215A", "G2293A", "C2302A", "A2413G", "C2521T", "A2557G", "C2575T", "C2596T", "A2617G", "T2723C", "G2725T", "A2872G", "G2878A", "A2884G", "G2951A", "A2977G", "G3016A", "A3027G", "C3031T", "A3279G", "T3303C", "G3316A", "C3322A", "T3346C", "A3592C", "C3652T", "C3668T", "T3755A", "C3843T", "A3985T", "C4006T", "G4012A", "A4021G", "C4042T", "G4060A", "G4078A", "A4155G", "A4225G", "C4381T", "T4579C", "T4701G", "C4728A", "G4736A", "G4764A", "A4774G", "T4835C", "G4861A", "A4865C", "G4870C", "T4907C", "A4951G", "C4977A", "A4994T", "A5049G", "C5146T", "A5151G", "T5314C", "G5370A", "G5371A", "C5393A", "G5418A", "C5425A", "C5482T", "G5545A", "G5599A", "T5602A", "A5611T", "G5643A", "G5650A", "G5652A", "C5653T", "A5655T", "A5689G", "T5695A", "A5722G", "C5727A", "G5734C", "A5737C", "C5866T", "G5965A", "A6031G", "A6045G", "C6067T", "G6121A", "A6159C", "G6172C", "T6180A", "T6181G", "T6184C", "A6186G", "C6187A", "A6194G", "A6200T", "A6201G", "C6202G", "A6203G", "A6212C", "G6234A", "T6242A", "A6263T", "A6282T", "T6287C", "C6317T", "A6318C", "A6329G", "A6333G", "A6471C", "G6481A", "G6503A", "T6551C", "G6732A", "A6770G", "T6787A", "G6806A", "A6819G", "A6820G", "T6838C", "A6891T", "T6898C", "C6925T", "C6938T", "-6962G", "-6964A", "-6967C", "-6968A", "-6969T", "-6972C", "-6975A", "-6976T", "-6977G", "A6990C", "-6993T", "T6994G", "-6995G", "-6996A", "-6997A", "-6998A", "-6999A", "-7000T", "-7001A", "-7002A", "-7003T", "-7004G", "-7005G", "-7006C", "A7040G", "A7096C", "G7106T", "A7149C", "A7152G", "A7157G", "T7159G", "A7161G", "C7164G", "A7241C", "A7345C", "C7463A", "T7466C", "G7534A", "T7656C", "G7831A", "A7903G", "G7915A", "C7932T", "C7984A", "T8091G", "T8097C", "G8105A", "C8120A", "A8130G", "C8147T", "C8182T", "A8184G", "A8323T", "G8330A", "A8338G", "A8341G", "G8393A", "C8415G", "A8446G", "G8469A", "G8506C", "A8531C", "A8617G", "T8675C"], "INT": ["A23V", "K127R"], "RT-p51": ["A286T", "K311R", "K395R", "M403T"], "RT-p66": ["A286T", "K311R", "K395R", "M403T", "S554T"], "gp120": ["N64S", "N102T", "A106V", "-107E", "-109R", "N113D", "S130T", "I137L", "K143M", "Y145H", "Q155S", "N158G", "N160D", "Y163S", "R164K", "N206T", "V217I", "-280T", "T292E", "G293D", "D294I", "N306D", "N311K", "K322R", "N327-", "-328N", "H346L", "-370G", "-372M", "-373T", "-374N", "-376T", "-377M", "-378E", "-379N", "-380N", "-381G", "I396V", "K414N", "V418L", "N432A", "-433S", "N435E", "T436S", "N437S", "I463L"], "gp41": ["L54M", "I118T", "M176I", "T210I", "F263C", "L265S", "A268T", "L273I", "L282F", "Q294R", "L340F", "A343T"], "nef": ["P25A", "Q35R", "V43I", "E63D", "K92R"], "p17": ["L46V", "E62K", "S66P", "T67S", "K69N", "E93D", "I104L", "K114E", "Q130Y"], "p2": ["-10T", "-12T"], "p24": ["W133*"], "p6": ["P5T", "N14D", "M17R", "Q28R", "N47S"], "pro": ["T12P", "G16A", "D60E"], "rev": ["S86N", "T91N", "P100L", "P112S"], "tat": ["P6H", "Q17K", "G57R", "P75S"], "vif": ["F39V", "H48N", "G60R", "K63R", "R92E", "S95T", "K122R", "R131S", "T155A", "P187L", "M189V"], "vpr": ["N16S", "G89N"], "vpu": ["T2S", "A15T", "L16F", "I28V", "F30I", "I39V", "V43L", "K44Q"]}, "labels": {"aa": "INT: A23V, K127R; RT-p51: A286T, K311R, K395R, M403T; RT-p66: A286T, K311R, K395R, M403T, S554T; gp120: N64S, N102T, A106V, -107E, -109R, N113D, S130T, I137L, K143M, Y145H, Q155S, N158G, N160D, Y163S, R164K, N206T, V217I, -280T, T292E, G293D, D294I, N306D, N311K, K322R, N327-, -328N, H346L, -370G, -372M, -373T, -374N, -376T, -377M, -378E, -379N, -380N, -381G, I396V, K414N, V418L, N432A, -433S, N435E, T436S, N437S, I463L; gp41: L54M, I118T, M176I, T210I, F263C, L265S, A268T, L273I, L282F, Q294R, L340F, A343T; nef: P25A, Q35R, V43I, E63D, K92R; p17: L46V, E62K, S66P, T67S, K69N, E93D, I104L, K114E, Q130Y; p2: -10T, -12T; p24: W133*; p6: P5T, N14D, M17R, Q28R, N47S; pro: T12P, G16A, D60E; rev: S86N, T91N, P100L, P112S; tat: P6H, Q17K, G57R, P75S; vif: F39V, H48N, G60R, K63R, R92E, S95T, K122R, R131S, T155A, P187L, M189V; vpr: N16S, G89N; vpu: T2S, A15T, L16F, I28V, F30I, I39V, V43L, K44Q"}}}]}, {"name": "CRF01_AE_NODE_0000034", "node_attrs": {"div": 0.11647999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C1755-", "T1756-", "A2413G", "A2566G", "G3001A", "C3160A", "T3346C", "A3907G", "T4579C", "G4677A", "G4736A", "A4774T", "A4865C", "A4916C", "G5545A", "A5784G", "A5955T", "C6693A", "C6938T", "T6953-", "G6954-", "A6990-", "A6992-", "T7009-", "G7132A", "A7931T", "T8047C", "C8287T", "C8789T", "T8903C"], "gp120": ["E34V", "-122E", "T385-"], "gp41": ["T210S"], "rev": ["Y28F", "S67P"], "tat": ["G57R"], "vif": ["V31I", "K63I", "Q110H"]}, "labels": {"aa": "gp120: E34V, -122E, T385-; gp41: T210S; rev: Y28F, S67P; tat: G57R; vif: V31I, K63I, Q110H"}}, "children": [{"name": "CRF01_AE_NODE_0000035", "node_attrs": {"div": 0.11830999999999998, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C1060A", "C1744T", "G2808A", "A3808C", "A5746C", "G5747A", "A5817G", "-6174C", "G6267A", "G6323A", "G6336A", "G6806A", "G6809A", "-6968G", "-6969G", "-6970A", "-6972C", "-6973C", "-6974A", "-6977G", "-6980G", "-6981G", "-6982G", "-6985T", "-6986A", "-6987A", "-6988T", "A8407G", "G8486A", "G8516A", "T8685C"], "INT": ["E11D"], "RT-p51": ["R238K"], "RT-p66": ["R238K"], "gp120": ["K127R", "S161N", "-376G", "-378N", "-379G", "-380T"], "nef": ["Q22R", "M48I", "Y115H"], "p24": ["T110N"], "vpu": ["R47Q"]}, "labels": {"aa": "INT: E11D; RT-p51: R238K; RT-p66: R238K; gp120: K127R, S161N, -376G, -378N, -379G, -380T; nef: Q22R, M48I, Y115H; p24: T110N; vpu: R47Q"}}, "children": [{"name": "JX447021", "node_attrs": {"div": 0.14681, "accession": "JX447021", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2004.0}, "Strain_name": {"value": "AA027a_wg4"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T131-", "A132-", "A136T", "G139A", "T141G", "C143-", "C144-", "T145-", "C146-", "A147-", "G148-", "A149-", "C150-", "C151-", "A152-", "C153-", "T154-", "C155-", "T156-", "A157-", "G158-", "A159-", "C160-", "T161-", "G164-", "T165-", "-167G", "A171G", "C173T", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "C193T", "T201C", "A215-", "A216-", "T217-", "G317A", "A386G", "T396C", "G428T", "A450C", "A513G", "A534G", "A576T", "G614T", "A645C", "A647G", "A659G", "A666T", "G677A", "A899T", "A932G", "A944C", "A968C", "G1031A", "C1040T", "A1089G", "A1090G", "T1100A", "G1127A", "T1344C", "T1403C", "A1442C", "C1444T", "G1452A", "G1474A", "T1481C", "A1492C", "A1499G", "T1502C", "C1535T", "A1562G", "A1565G", "G1568A", "G1586A", "A1657G", "G1673A", "-1745A", "-1753T", "-1755C", "-1756C", 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"G6133A", "A6158C", "T6160C", "T6180C", "A6185T", "A6186T", "C6187G", "T6193G", "C6198G", "T6220G", "T6244C", "A6266C", "G6280A", "C6286T", "T6295C", "T6325G", "T6331G", "T6395A", "C6684A", "A6691G", "A6693T", "A6718G", "T6720G", "C6721G", "T6787G", "A6790G", "A6798C", "A6818C", "-6833A", "-6834A", "-6835A", "A6840G", "A6856G", "G6910A", "A6935C", "-6953T", "-6954G", "-6955G", "-6956T", "-6957C", "-6958A", "-6959C", "-6960A", "-6961A", "-6962A", "-6963A", "-6964T", "-6975C", "-6976G", "-6978A", "-6979G", "-6983C", "-6984A", "A6989G", "-6990G", "C6991T", "-6992A", "-6993C", "A7007-", "C7008-", "G7026A", "A7148G", "A7149G", "A7151G", "A7152G", "A7154G", "A7155C", "C7165T", "G7212A", "A7297C", "A7420G", "G7440T", "A7620G", "A7626T", "A7701C", "A7711G", "C7723T", "G7735A", "T7865G", "G7871A", "A7885G", "G7977A", "G7997A", "G8019C", "C8038G", "C8095A", "T8097A", "G8098C", "C8103T", "C8106T", "C8183A", "T8235C", "A8275G", "C8311T", "G8329A", "G8404A", "C8451T", "A8459T", "G8506A", "A8517G", "G8518A", "G8528A", "G8534C", "A8536G", "G8558A", "C8568T", "T8603A", "A8653G", "T8711C", "G8794A", "G8808A", "G8818A", "A8819G", "A8822G", "A8851T", "A8858C", "A8869C", "A8874G", "G8936A", "A8938G", "T8951C", "C9017T", "A9135G"], "INT": ["R14K", "S24G", "A124T", "R136Q", "K188R"], "RT-p51": ["S162Y", "E245Q", "A286I", "V293I", "T312N", "V435I"], "RT-p66": ["S162Y", "E245Q", "A286I", "V293I", "T312N", "V435I", "H483Y", "V517I", "S554L"], "gp120": ["R18K", "V34L", "V80I", "N102H", "-107K", "-109S", "T110N", "N111I", "-112T", "-114D", "-115G", "-116V", "-117L", "-118G", "-119N", "-120I", "-121T", "R138Q", "E157K", "N159K", "S181T", "T277K", "I279M", "H280I", "F289W", "D294E", "N311K", "K315T", "K322Q", "-326K", "-328R", "K329-", "K361Q", "-367W", "-368S", "-369N", "-370G", "-374T", "-375E", "-377H", "R391K", "N432G", "-433G", "S453N", "E481D"], "gp41": ["R46M", "K106R", "Y108F", "E133A", "F188V", "V190M", "G225E", "D232N", "S239T", "L265Y", "A267V", "A268V", "Q294K", "V311A"], "nef": ["R21K", "K39N", "S55Y", "R59E", "E64D", "E65G", "K104R", "R151K", "D156N", "G159E", "Q170L", "E176A", "R178G", "H199R"], "p1": ["N9S"], "p17": ["M31I", "I60V", "T67A", "T81S", "E93D", "I104L", "S111C"], "p2": ["Q6H", "A7V", "Q8T"], "p24": ["E71D", "E79D", "N120G"], "p6": ["T22I", "E34D"], "p7": ["R3K", "Q9P"], "pro": ["V13I", "K14R", "L63P", "I93L"], "rev": ["R50K", "E57D", "L64V", "L83I", "D84H", "P112Q"], "tat": ["P3L", "K24N", "Q35E"], "vif": ["I31K", "K37N", "I63R", "N93K", "D113E", "R131H", "S137A", "T154I", "R160K", "K176E", "R181K"], "vpr": ["Q3R", "T19A", "Y45H", "N48T", "L68I", "V70I", "F72Y"], "vpu": ["V10I", "F30Y", "K32R", "R35K", "R37K"]}, "labels": {"aa": "INT: R14K, S24G, A124T, R136Q, K188R; RT-p51: S162Y, E245Q, A286I, V293I, T312N, V435I; RT-p66: S162Y, E245Q, A286I, V293I, T312N, V435I, H483Y, V517I, S554L; gp120: R18K, V34L, V80I, N102H, -107K, -109S, T110N, N111I, -112T, -114D, -115G, -116V, -117L, -118G, -119N, -120I, -121T, R138Q, E157K, N159K, S181T, T277K, I279M, H280I, F289W, D294E, N311K, K315T, K322Q, -326K, -328R, K329-, K361Q, -367W, -368S, -369N, -370G, -374T, -375E, -377H, R391K, N432G, -433G, S453N, E481D; gp41: R46M, K106R, Y108F, E133A, F188V, V190M, G225E, D232N, S239T, L265Y, A267V, A268V, Q294K, V311A; nef: R21K, K39N, S55Y, R59E, E64D, E65G, K104R, R151K, D156N, G159E, Q170L, E176A, R178G, H199R; p1: N9S; p17: M31I, I60V, T67A, T81S, E93D, I104L, S111C; p2: Q6H, A7V, Q8T; p24: E71D, E79D, N120G; p6: T22I, E34D; p7: R3K, Q9P; pro: V13I, K14R, L63P, I93L; rev: R50K, E57D, L64V, L83I, D84H, P112Q; tat: P3L, K24N, Q35E; vif: I31K, K37N, I63R, N93K, D113E, R131H, S137A, T154I, R160K, K176E, R181K; vpr: Q3R, T19A, Y45H, N48T, L68I, V70I, F72Y; vpu: V10I, F30Y, K32R, R35K, R37K"}}}, {"name": "AY945716", "node_attrs": {"div": 0.14228, "accession": "AY945716", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2000.0}, "Strain_name": {"value": "00TH_C2101"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A356G", "G378A", "G424A", "G438A", "C467T", "T486C", "A503G", "A562G", "T571A", "T662G", "G696A", "G697A", "A701C", "T788C", "T858C", "G866A", "T974C", "G998A", "C1013T", "C1220T", "A1256G", "C1449A", "C1453T", "A1455C", "G1493A", "A1525G", "T1653C", "A1664G", "G1670A", "A1686G", "C1688A", "A1709G", "T1749-", "C1750-", "C1751-", "T1752-", "A1754-", "A1783G", "G2008A", "A2126T", "A2272G", "G2273A", "G2332A", "A2362G", "G2380A", "A2422G", "G2459A", "G2463A", "A2470G", "T2494C", "A2500G", "A2551G", "C2653T", "C2728T", "G2755A", "C2806T", "A2829T", "A2884G", "A2911G", "A2915C", "C3067A", "G3097A", "C3178T", "T3187C", "A3193G", "G3211A", "A3279G", "T3355C", "G3435A", "C3449T", "G3685A", "C3692T", "G3834A", "G3869A", "A3891G", "G3952A", "G4267A", "G4268A", "T4426C", "A4531G", "C4652T", "C4679T", "A4721G", "C4761T", "A4775C", "T4776A", "C4889T", "C4890A", "T4991C", "A5049G", "A5090G", "T5147C", "G5170A", "T5171A", "G5272A", "A5282C", "T5293G", "A5355T", "A5357G", "G5382A", "C5383A", "C5438A", "A5548C", "G5556A", "A5575G", "A5576G", "G5599A", "T5602A", "A5632G", "C5687G", "T5695G", "A5704G", "C5707T", "G5730A", "A5780G", "C5802T", "C5834A", "T5851G", "G5948A", "A6013G", "A6030G", "C6067A", "T6072C", "G6079A", "T6166C", "T6181C", "A6191T", "A6194G", "A6195C", "A6197C", "A6200G", "A6201G", "A6206G", "G6207A", "T6211G", "A6288C", "T6322C", "A6327G", "A6330G", "T6334G", "T6373C", "T6412C", "A6465G", "G6547T", "A6604G", "C6618T", "C6661A", "C6669T", "A6689G", "A6692C", "A6752G", "A6753C", "G6774A", "A6779C", "A6818G", "G6841A", "C6850T", "A6932T", "G6948C", "T6949A", "T6952A", "-6965A", "-6966A", "-6967T", "-6975T", "-6976A", "-6978C", "-6979A", "-6983T", "-6984C", "A6989-", "C6991-", "T6994-", "-7004G", "-7005G", "-7006C", "-7009C", "A7040G", "T7059C", "A7095G", "A7158C", "T7162-", "A7163-", "C7164-", "G7182C", "G7269A", "G7468A", "G7534A", "A7651C", "A7689G", "G7702A", "G7729A", "C7732A", "A7756G", "A7796T", "A7800G", "T7801A", "G7831A", "T7852C", "C7926T", "G7944A", "C7949G", "G7957A", "A7964G", "G7980A", "C8009A", "T8032A", "C8038T", "A8076G", "C8092A", "G8105A", "T8171A", "T8196C", "T8206C", "C8213T", "T8221C", "C8223T", "C8232T", "G8239A", "A8273G", "C8320T", "A8370G", "G8421A", "A8459G", "G8469A", "G8479C", "T8480A", "G8506C", "A8573G", "T8600C", "A8717T"], "INT": ["R20K", "V32I", "N39S", "V165I"], "RT-p51": ["T11S", "V60I", "E122K", "S123N", "I135M", "E245V", "I274L", "D324E", "K395R"], "RT-p66": ["T11S", "V60I", "E122K", "S123N", "I135M", "E245V", "I274L", "D324E", "K395R", "S447N"], "gp120": ["A32T", "E59G", "N71K", "V73A", "N105S", "-109L", "-112V", "-114N", "-115I", "-116T", "-117Y", "-118A", "-119P", "-120G", "-121I", "-123K", "-124I", "R138K", "Y145S", "E157N", "N158S", "N159S", "N160K", "N204S", "L231F", "T255I", "S272F", "I279V", "K300A", "G307E", "K309Q", "K322E", "N327-", "-328N", "T360S", "S365T", "-367N", "-368G", "-369T", "-370I", "T371A", "-377S", "I396V", "V402A", "K414R", "G443A", "R472K"], "gp41": ["N129S", "D143E", "T165S", "N166R", "M176I", "T208I", "R214K", "P216A", "R221G", "G226D", "H258R", "F263L", "A268T", "R277Q", "L290I", "I298T", "L304F", "T307I", "A310V", "R324G"], "nef": ["I10V", "A27T", "V43I", "S46T", "Q125H"], "p1": ["S8P"], "p17": ["A15T", "R30K", "V35I", "K76R", "F79Y", "N109K", "G121N"], "p2": ["-10V", "-11H"], "p6": ["S3G", "T22M", "S23-", "L24-", "P25-", "H35R"], "p7": ["K20R"], "rev": ["E11D", "R14K", "I21V", "T34S", "A37T", "K39R", "A54E", "S62T", "H82N", "S86N", "V108D"], "tat": ["P3T", "A21D", "T58P", "N67G", "P73S", "G79R", "N80K", "G83D"], "vif": ["L64I", "L102I", "T155A"], "vpr": ["Y15H", "L23I", "I60L", "I63M", "I84L", "A93N"], "vpu": ["I9V", "A27G", "F30V", "I33V", "E58G", "P76H", "L82V"]}, "labels": {"aa": "INT: R20K, V32I, N39S, V165I; RT-p51: T11S, V60I, E122K, S123N, I135M, E245V, I274L, D324E, K395R; RT-p66: T11S, V60I, E122K, S123N, I135M, E245V, I274L, D324E, K395R, S447N; gp120: A32T, E59G, N71K, V73A, N105S, -109L, -112V, -114N, -115I, -116T, -117Y, -118A, -119P, -120G, -121I, -123K, -124I, R138K, Y145S, E157N, N158S, N159S, N160K, N204S, L231F, T255I, S272F, I279V, K300A, G307E, K309Q, K322E, N327-, -328N, T360S, S365T, -367N, -368G, -369T, -370I, T371A, -377S, I396V, V402A, K414R, G443A, R472K; gp41: N129S, D143E, T165S, N166R, M176I, T208I, R214K, P216A, R221G, G226D, H258R, F263L, A268T, R277Q, L290I, I298T, L304F, T307I, A310V, R324G; nef: I10V, A27T, V43I, S46T, Q125H; p1: S8P; p17: A15T, R30K, V35I, K76R, F79Y, N109K, G121N; p2: -10V, -11H; p6: S3G, T22M, S23-, L24-, P25-, H35R; p7: K20R; rev: E11D, R14K, I21V, T34S, A37T, K39R, A54E, S62T, H82N, S86N, V108D; tat: P3T, A21D, T58P, N67G, P73S, G79R, N80K, G83D; vif: L64I, L102I, T155A; vpr: Y15H, L23I, I60L, I63M, I84L, A93N; vpu: I9V, A27G, F30V, I33V, E58G, P76H, L82V"}}}]}, {"name": "CRF01_AE_NODE_0000036", "node_attrs": {"div": 0.12169999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C596T", "T774G", "G791A", "A968G", "T992G", "G1109A", "A1719G", "-1745C", "-1753C", "C1786A", "G2542A", "C2776T", "T2803G", "G3097A", "C3391A", "C3652T", "G3667A", "G3916A", "A4693G", "A4694T", "A5355T", "A5357G", "C5482T", "G5587A", "A6024C", "T6170G", "T6171C", "G6172T", "A6183C", "T6184A", "A6201C", "G6234A", "T6242A", "A6262G", "G6463A", "G6526A", "C6618A", "-6835T", "A6848G", "T6952-", "A7040G", "A7096C", "C7691A", "A7696C", "A7703C", "G7735A", "T7762C", "A7964G", "C8182T", "A8191G", "G8234A", "T8505A", "G8807A", "G8875A"], "RT-p51": ["D432E"], "RT-p66": ["D432E"], "gp120": ["H57P", "-124G", "V126I", "S130T", "T255N", "I396V", "K414S"], "gp41": ["A96N", "I134L", "R221G", "V311T"], "nef": ["R178K"], "p24": ["H87Q"], "p6": ["N14D", "P36H"], "rev": ["K39R", "P112S", "K115E"], "tat": ["E71K"], "vif": ["K36S", "R181M"], "vpr": ["I84L"]}, "labels": {"aa": "RT-p51: D432E; RT-p66: D432E; gp120: H57P, -124G, V126I, S130T, T255N, I396V, K414S; gp41: A96N, I134L, R221G, V311T; nef: R178K; p24: H87Q; p6: N14D, P36H; rev: K39R, P112S, K115E; tat: E71K; vif: K36S, R181M; vpr: I84L"}}, "children": [{"name": "MN792550", "node_attrs": {"div": 0.1601, "accession": "MN792550", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2011.0}, "Strain_name": {"value": "40577v01_01"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G367A", "T372C", "A380T", "T396C", "A419G", "G424T", "T456C", "A458G", "A461C", "C467T", "T525C", "A534G", "A563G", "G579A", "A605G", "A647G", "G650A", "T655C", "A661C", "G667A", "A743G", "T746C", "G866A", "A944G", "A1017T", "A1043C", "A1070G", "A1088G", "A1097G", "G1127A", "G1173A", "T1174C", "C1280T", "T1335C", "A1339G", "T1422C", "A1442C", "A1450G", "G1469A", "A1495G", "G1498-", "A1499-", "A1500-", "T1501-", "T1502-", "-1504T", "-1505T", "A1544G", "T1583C", "C1610T", "G1640C", "A1642G", "A1644T", "T1646C", "A1656C", "A1664G", "G1673A", "A1728G", "T1741C", "-1746T", "-1747C", "-1748C", "T1749C", "C1750T", "C1751A", "T1752C", "G1757-", "G1763A", "G1769A", "A1777G", "T1784G", "G1855A", "A1879G", "A2056G", "C2057A", "G2164A", "G2224A", "C2296T", "A2297G", "T2356C", "T2365C", "T2443C", "G2473A", "C2485T", "C2521T", "G2566A", "G2630A", "G2682A", "G2707A", "A2710G", "T2719C", "A2734G", "A2825G", "C2831T", "T2863C", "G2909C", "A2915G", "A2937G", "A3136G", "A3145G", "A3200G", "G3264A", "T3310C", "T3328A", "T3380C", "G3398A", "A3400G", "G3435A", "G3439A", "G3448A", "A3454G", "A3484G", "T3559C", "A3562C", "A3706G", "G3718A", "A3727G", "C3763T", "G3769A", "G3772T", "G3787A", "G3796A", "A3808G", "T4024C", "A4057G", "C4141T", "C4144T", "G4226A", "G4252A", "A4255G", "A4393T", "A4531G", "A4544-", "T4545-", "A4546-", "A4547-", "A4548-", "A4549-", "G4550-", "T4551-", "A4552-", "G4553-", "T4554-", "A4555-", "C4556-", "C4557-", "A4558-", "A4559-", "G4560-", "A4561-", "A4562-", "G4563-", "A4564-", "A4565-", "A4566-", "A4567-", "G4568-", "C4569-", "A4570-", "A4571-", "A4572-", "G4573-", "A4574-", "T4575-", "C4576-", "A4577-", "T4578-", "C4579-", "A4580-", "G4581-", "G4582-", "G4583-", "A4584-", "T4585-", "T4586-", "A4587-", "T4588-", "G4589-", "G4590-", "A4591-", "A4592-", "A4593-", "A4594-", "C4595-", "A4596-", "G4597-", "C4761A", "G4769A", "G4779A", "A4806C", "A4860G", "G4870A", "A4877G", "C4899A", "C4911T", "C4916A", "A4951G", "A5033C", "G5059A", "C5073T", "G5128T", "G5131A", "C5133A", "C5168T", "G5212A", "C5221A", "C5227T", "T5245C", "A5246T", "A5278G", "G5363A", "C5384T", "C5425A", "G5448T", "A5462G", "T5515C", "C5539A", "A5545C", "A5573C", "A5574G", "A5575C", "A5581G", "A5594G", "A5611T", "G5619A", "T5636C", "T5696A", "G5712A", "G5734A", "A5737G", "G5739T", "C5787-", "A5788-", "C5789-", "A5790-", "G5791-", "A5792-", "T5793-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "G5799-", "G5800-", "C5801T", "C5802G", "A5803C", "A5805G", "C5806A", "T5808G", "-5809T", "-5810T", "-5811G", "T5813C", "G5814T", "G5815A", "A5818C", "G5820T", "G5822T", "C5834G", "T5835C", "T5844C", "G5872A", "T5917C", "C5944T", "C5974T", "C6025T", "G6029A", "A6045G", "T6046A", "G6088A", "C6097A", "C6110G", "T6154C", "A6158C", "-6174A", "A6176-", "A6177C", "T6180A", "T6181G", "A6182C", "A6186G", "C6187T", "A6188-", "C6189-", "A6195C", "A6200G", "T6204G", "A6205G", "G6207A", "A6208C", "A6210T", "T6211G", "A6214C", "C6216G", "T6220C", "G6221A", "A6222T", "-6225G", "-6226A", "-6227A", "-6228A", "-6229T", "-6230A", "A6234C", "C6256T", "G6280T", "T6287C", "A6292G", "C6317A", "T6325A", "A6326G", "A6332G", "A6333G", "A6338G", "T6340G", "A6443C", "T6446C", "A6448T", "T6460G", "A6553G", "A6589C", "A6639G", "T6643A", "A6649G", "A6715G", "G6726A", "A6734G", "T6735A", "A6736C", "A6751G", "T6787G", "A6791G", "C6792T", "A6797G", "A6810C", "A6819G", "G6823A", "-6833C", "-6834C", "T6904C", "G6948A", "-6952A", "-6956T", "-6957A", "-6958T", "-6959A", "-6960A", "-6961T", "-6962G", "-6963G", "A6971-", "-6990A", "-6992C", "-6993A", "-6995G", "-6996G", "-6997A", "-6998G", "-6999G", "-7000A", "-7001A", "-7002A", "-7003T", "-7004G", "-7005G", "-7006G", "-7009T", "T7059C", "G7072A", "G7089A", "T7090G", "A7095G", "A7101G", "T7102A", "T7153A", "A7154G", "A7155C", "A7157T", "A7158C", "A7161C", "T7162A", "C7164A", "A7256G", "G7269A", "A7282G", "A7313C", "G7319A", "G7366A", "A7372G", "A7373G", "G7390A", "C7463A", "A7492G", "A7505C", "A7532C", "A7542G", "T7555A", "A7574G", "G7589T", "A7629C", "A7640G", "C7645T", "A7655G", "T7656C", "T7681C", "A7691G", "G7700A", "C7706A", "G7726A", "G7734A", "T7747G", "A7753G", "A7756G", "G7915A", "T7931A", "C7932T", "T7939G", "C7960A", "C8038G", "C8047T", "A8050T", "T8097C", "C8146T", "T8167C", "A8184G", "T8235C", "C8296T", "C8311T", "T8337A", "G8388A", "A8396C", "G8476C", "G8479C", "T8515A", "G8516A", "A8517G", "G8518A", "C8521A", "C8523G", "A8527G", "G8537A", "G8555A", "G8558A", "A8591G", "T8597C", "T8603C", "C8640T", "G8666C", "A8717C", "C8741T", "A8812C", "C8813A", "A8819G", "A8827G", "A8861G", "G8868C", "A8869C", "A8917G", "T8939C", "G8945A", "T8958-", "G8959-", "C8960-", "T8961-", "G8962-", "A8963-", "C8964-", "A8965-", "A8966-", "A8967-", "G8968-", "A8969-", "A8970-", "G8971-", "T8972-", "T8973-", "T8974-", "C8975-", "T8976-", "A8977-", "A8978-", "C8979-", "T8980-", "A8981-", "G8982-", "G8983-", "A8984-", "C8985-", "T8986-", "T8987-", "C8989-", "C8990-", "G8991-", "C8992-", "T8993-", "G8994-", "G8995-", "G8996-", "G8997-", "A8998-", "C8999-", "T9000-", "T9001-", "T9002-", "C9003-", "C9004-", "A9005-", "G9006-", "G9007-", "G9008-", "A9009-", "G9010-", "G9011-", "T9012-", "G9013-", "T9014-", "G9015-", "G9016-", "C9017-", "C9018-", "G9019-", "G9020-", "G9021-", "G9022-", "C9023-", "G9024-", "G9025-", "A9026-", "G9027-", "T9028-", "T9029-", "G9030-", "G9031-", "G9032-", "G9033-", "A9034-", "G9035-", "T9036-", "G9037-", "G9038-", "C9039-", "T9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "A9060T", "C9064-", "A9065-", "G9066-", "C9067-", "C9068-", "G9069-", "C9070-", "T9071-", "T9072-", "T9073-", "T9074-", "C9075-", "G9076-", "C9077-", "T9078-", "T9079-", "G9080-", "T9081-", "A9082-", "C9083-", "T9084-", "G9085-", "G9086-", "G9087-", "T9088-", "C9089-", "T9090-", "C9091-", "T9092-", "C9093-", "T9094-", "T9095-", "G9096-", "T9097-", "T9098-", "A9099-", "G9100-", "A9101-", "C9102-", "C9103-", "A9104-", "G9105-", "G9106-", "T9107-", "C9108-", "G9110-", "A9111-", "G9112-", "C9113-", "C9114-", "C9115-", "G9116-", "G9117-", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-", "G9127-", "G9128-", "C9129-", "T9130-", "A9131-", "G9132-", "C9133-", "A9134-", "A9135-", "G9136-", "G9137-", "G9138-", "A9139-", "A9140-", "C9141-", "C9142-", "C9143-", "T9150G"], "INT": ["V151I", "I257-", "K258-", "V259-", "V260-", "P261-", "R262-", "R263-", "K264-", "A265-", "K266-", "I267-", "I268-", "R269-", "D270-", "Y271-", "G272-", "K273-", "Q274-"], "RT-p51": ["S68G", "V179I", "G196E", "I244V", "A272P", "I274V", "K281R", "T369A", "R390K", "V435M"], "RT-p66": ["S68G", "V179I", "G196E", "I244V", "A272P", "I274V", "K281R", "T369A", "R390K", "V435M", "S447N"], "gp120": ["E59K", "N64R", "Q86E", "N102H", "N108-", "-114T", "-115T", "-116A", "-117R", "-118N", "-119M", "-120I", "-121R", "E122D", "-123I", "K127S", "Q142H", "Y145H", "Q155K", "N160G", "S162G", "I197L", "D202E", "R245S", "K262R", "H280N", "R291K", "N311K", "T313V", "K315E", "T318A", "K319A", "K322R", "-326P", "I332V", "S365N", "-367Y", "-368N", "-369G", "T371-", "-385T", "V402A", "M406I", "S412K", "N416R", "-433K", "N434A", "N435S", "I468V", "R472K"], "gp41": ["I4L", "A6T", "I24V", "L54M", "K77Q", "K80R", "I91V", "N96S", "E109A", "N113D", "I118A", "Q130E", "E133K", "L135I", "R144K", "D148E", "S210I", "H212Q", "L265S", "Q294R", "L345Q"], "nef": ["V16I", "E18D", "S45T", "S46T", "E108D", "Q125H", "N157T", "N162S", "I173M", "E176P", "K192R"], "p1": ["K4R", "I5F", "N9H"], "p17": ["G11E", "R30M", "E42D", "T67A", "V82I", "I104M", "V107A", "N109T", "S111N"], "p2": ["Q6H", "N9R", "-11A", "-12N"], "p24": ["L15V", "M96L", "V148T", "K203R"], "p6": ["M17V", "I21T", "K33R", "H35Q"], "p7": ["M1I", "K10R", "R11I", "I12-"], "rev": ["E10D", "K20R", "F28Y", "S31A", "L64V", "P67S", "T68S", "P100S", "S107P"], "tat": ["P3L", "Q17K", "K24N", "K29R", "Y47H", "Q66P", "N67H", "I69V", "P75S", "I77S", "P84Q"], "vif": ["L59I", "V65I", "T74P", "R92G", "S95N", "Q105K", "H110Q", "K122R", "R158K", "G182D", "H183N"], "vpr": ["Q8H", "P10Q", "N48Y"], "vpu": ["T2S", "V10A", "F30Y", "V43I", "K44D", "T61-", "D62-", "E63-", "L64-", "A65-", "V69-", "E70-", "M71-", "G72-", "D73-", "F74-", "D75A", "P76K"]}, "labels": {"aa": "INT: V151I, I257-, K258-, V259-, V260-, P261-, R262-, R263-, K264-, A265-, K266-, I267-, I268-, R269-, D270-, Y271-, G272-, K273-, Q274-; RT-p51: S68G, V179I, G196E, I244V, A272P, I274V, K281R, T369A, R390K, V435M; RT-p66: S68G, V179I, G196E, I244V, A272P, I274V, K281R, T369A, R390K, V435M, S447N; gp120: E59K, N64R, Q86E, N102H, N108-, -114T, -115T, -116A, -117R, -118N, -119M, -120I, -121R, E122D, -123I, K127S, Q142H, Y145H, Q155K, N160G, S162G, I197L, D202E, R245S, K262R, H280N, R291K, N311K, T313V, K315E, T318A, K319A, K322R, -326P, I332V, S365N, -367Y, -368N, -369G, T371-, -385T, V402A, M406I, S412K, N416R, -433K, N434A, N435S, I468V, R472K; gp41: I4L, A6T, I24V, L54M, K77Q, K80R, I91V, N96S, E109A, N113D, I118A, Q130E, E133K, L135I, R144K, D148E, S210I, H212Q, L265S, Q294R, L345Q; nef: V16I, E18D, S45T, S46T, E108D, Q125H, N157T, N162S, I173M, E176P, K192R; p1: K4R, I5F, N9H; p17: G11E, R30M, E42D, T67A, V82I, I104M, V107A, N109T, S111N; p2: Q6H, N9R, -11A, -12N; p24: L15V, M96L, V148T, K203R; p6: M17V, I21T, K33R, H35Q; p7: M1I, K10R, R11I, I12-; rev: E10D, K20R, F28Y, S31A, L64V, P67S, T68S, P100S, S107P; tat: P3L, Q17K, K24N, K29R, Y47H, Q66P, N67H, I69V, P75S, I77S, P84Q; vif: L59I, V65I, T74P, R92G, S95N, Q105K, H110Q, K122R, R158K, G182D, H183N; vpr: Q8H, P10Q, N48Y; vpu: T2S, V10A, F30Y, V43I, K44D, T61-, D62-, E63-, L64-, A65-, V69-, E70-, M71-, G72-, D73-, F74-, D75A, P76K"}}}, {"name": "CRF01_AE_NODE_0000037", "node_attrs": {"div": 0.13102, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A452G", "C590T", "G614A", "G956A", "G978A", "T979C", "G1019A", "G1078C", "A1361T", "A1397G", "G1474A", "A1492C", "C1550T", "G1733A", "A1781C", "T1792C", "G2215A", "C2263T", "T2392A", "A2563T", "A2579T", "T2613A", "A2626G", "C3023T", "G3044A", "T3045C", "G3715A", "G3772A", "A3836G", "A3891G", "T3962C", "G4353A", "G4861A", "G4978A", "T4991C", "G5087A", "T5314C", "T5602C", "G5699A", "C5707T", "A5718G", "C5787T", "G5864A", "C6145T", "T6166C", "A6173-", "C6175-", "C6198G", "A6275C", "T6322G", "T6466G", "A6595G", "T6690C", "A6693G", "T6694A", "A6712T", "A6718G", "A6779G", "-6965A", "-6966A", "-6968T", "-6969G", "-6972A", "-6973C", "-6974C", "-6976G", "-6977G", "-6979A", "-6980G", "-6981G", "-6982G", "-6984C", "-6985T", "-6987A", "T6994-", "G7106A", "T7107C", "T7159C", "T7180G", "G7291T", "G7589A", "A8050G", "G8105A", "A8130G", "T8196C", "G8421A", "T8675C", "A8678G", "T8690C", "A8693C"], "INT": ["T21A", "N39S", "G193E"], "RT-p51": ["S162C", "I173K", "V317T"], "RT-p66": ["S162C", "I173K", "V317T"], "gp120": ["D4N", "-109I", "-114S", "K141Q", "N204K", "I279T", "H280R", "K309E", "V418T", "N437T", "E479D"], "gp41": ["Q130K", "A268T", "I298T"], "p2": ["Q8T"], "p24": ["V83T", "M96I", "G116A"], "p6": ["E34D", "L38P"], "p7": ["R3K", "Q9P"], "rev": ["T68A", "S86N", "Q95G"], "tat": ["Q17R"], "vif": ["R92K", "R131H"], "vpu": ["R31K"]}, "labels": {"aa": "INT: T21A, N39S, G193E; RT-p51: S162C, I173K, V317T; RT-p66: S162C, I173K, V317T; gp120: D4N, -109I, -114S, K141Q, N204K, I279T, H280R, K309E, V418T, N437T, E479D; gp41: Q130K, A268T, I298T; p2: Q8T; p24: V83T, M96I, G116A; p6: E34D, L38P; p7: R3K, Q9P; rev: T68A, S86N, Q95G; tat: Q17R; vif: R92K, R131H; vpu: R31K"}}, "children": [{"name": "MT347590", "node_attrs": {"div": 0.16931, "accession": "MT347590", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2017.0}, "Strain_name": {"value": "nj135"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C399A", "T456C", "T485G", "A492T", "A516C", "A518G", "G530A", "T571A", "T583C", "C602T", "G607A", "G615A", "A632G", "A664G", "C771T", "G774C", "A803C", "G866A", "T885A", "G908A", "T1094C", "T1100G", "C1115A", "G1126A", "G1127A", "A1151G", "A1176G", "G1271A", "C1295T", "T1335C", "G1388A", "A1433G", "C1439T", "A1442G", "G1443A", "C1453T", "T1483G", "T1484G", "G1493A", "A1525G", "C1541T", "A1565G", "A1614C", "G1673A", "T1676C", "A1709T", "G1732A", "A1735G", "A1736G", "T1741C", "C1744A", "-1746T", "-1747C", "-1748T", "T1749G", "C1750T", "C1751A", "T1752C", "A1754-", "A1771G", "A1777G", "C1781T", "A1783-", "T1784-", "C1785-", "G1835A", "C1853T", "G1855A", "A1857G", "A1870G", "G1968A", "C1985A", "A2007G", "T2071C", "G2117A", 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"A5499G", "T5515C", "A5534G", "G5535A", "A5575G", "A5576T", "A5581G", "C5658A", "C5687G", "G5734A", "T5793C", "T5797-", "T5798-", "G5799-", "G5800T", "C5801T", "C5802G", "A5803G", "A5804C", "A5805C", "C5806A", "T5807C", "T5808A", "-5809C", "-5810T", "-5811T", "C5834A", "A5848G", "C5866T", "G5954A", "T5955A", "G5963A", "C5974T", "C5984T", "T5986C", "A6022G", "C6026T", "A6030T", "G6035A", "A6061G", "T6072C", "G6079A", "G6088A", "T6134C", "T6139G", "A6159C", "C6165A", "A6167G", "G6170-", "C6171-", "T6172-", "A6185G", "A6186T", "C6187A", "T6193C", "C6196T", "G6198A", "T6204A", "A6205T", "A6208C", "A6210T", "T6211A", "A6212G", "T6213G", "C6216A", "A6217T", "G6218A", "A6219T", "T6220A", "G6221A", "A6222C", "-6225A", "-6226T", "-6227G", "-6228A", "-6229T", "-6230G", "A6281C", "G6284A", "T6285C", "A6318C", "G6322A", "A6330G", "A6333C", "G6339C", "T6364C", "A6392G", "T6400C", "A6425G", "A6448C", "A6605G", "G6611A", "C6629A", "T6637C", "A6648G", "A6654G", "C6660T", "C6669T", "C6684A", "T6712C", "A6810C", "A6814G", "A6822G", "T6828-", "T6829-", "-6834A", "T6876C", "A6937G", "G6940A", "T6949C", "-6962A", "-6963G", "-6964A", "-6967A", "-6970G", "-6975A", "-6978G", "-6983G", "-6986T", "-6988A", "A6989-", "C6991-", "-7003T", "-7004G", "-7005G", "-7006C", "C7008A", "-7009G", "T7059C", "A7088C", "G7089A", "T7090G", "A7095G", "C7096T", "C7127A", "A7149T", "A7160G", "T7162G", "C7165A", "A7186G", "A7191G", "A7195G", "A7196C", "A7197T", "G7198T", "A7256G", "G7269A", "A7301C", "G7441A", "G7534C", "C7590A", "C7597T", "A7626T", "A7655G", "A7692G", "C7696T", "C7706A", "C7732T", "G7734A", "T7843C", "A7846G", "G7868A", "C7898G", "T7936C", "G7987T", "T8016C", "T8032A", "C8033A", "G8036T", "C8037T", "G8055A", "C8065T", "C8080A", "A8132G", "T8164C", "T8210C", "A8227C", "C8232T", "G8254A", "A8273G", "C8277T", "C8294A", "A8297G", "G8354A", "A8370T", "T8371C", "G8387A", "G8393A", "A8396T", "A8402G", "C8415G", "G8439A", "T8440C", "A8505G", "G8506C", "G8534A", "A8536G", "C8552T", "G8558A", "A8584T", "A8652C", "A8662G", "C8684T", "A8688C", "C8693T", "A8717G", "C8728A"], "INT": ["R14K", "K111T", "D279G"], "RT-p51": ["V8I", "S105A", "E122K", "S123N", "K173R", "T200I", "A207T", "R238K", "A272P", "K275R", "K277R", "K281R", "V365I", "T377M"], "RT-p66": ["V8I", "S105A", "E122K", "S123N", "K173R", "T200I", "A207T", "R238K", "A272P", "K275R", "K277R", "K281R", "V365I", "T377M", "T470S"], "gp120": ["V34K", "V37M", "H44Y", "I56M", "E59V", "V61I", "V73A", "N102T", "T104N", "N105D", "A106N", "-107V", "N108T", "I109V", "-112T", "-115I", "E122-", "E125N", "K143Q", "V144T", "Q155P", "E157D", "N159S", "N160T", "S162T", "I180V", "T191A", "L198F", "N251D", "A253T", "H259N", "E265G", "N267S", "T269I", "S272F", "T277K", "T318A", "K319A", "E323G", "F325Y", "N327-", "-328N", "I332V", "L341P", "V402A", "S412Q", "L425I", "N432I", "-433N", "T436E", "N446S", "I447M", "K448L", "I468V", "R472K"], "gp41": ["K77N", "Y108F", "I118V", "K130R", "L135I", "R144K", "A189T", "Q199E", "E228D", "V238A", "L244I", "A245F", "S251N", "R277G", "A310V", "T311I", "R324G", "A325V", "H331N", "I332V"], "nef": ["I10S", "E18D", "I20M", "P25A", "A27T", "V33T", "S55A", "E65G", "Y81F", "K104Q", "Q107R", "N116H"], "p17": ["T53S", "I61L", "F79Y", "V83A", "R91K", "V94I", "K110R"], "p2": ["A7-", "N9Q", "-10H", "-11V", "-12N"], "p24": ["P14S", "L52I", "D128E", "R132K", "S149G"], "p6": ["G18E", "E19G", "I21T", "T22N", "L24V", "K31R", "K33R", "H36-", "P38S"], "p7": ["F6W", "K20R", "T50P"], "pro": ["V13I", "K20R", "R57K", "L63I", "K70R"], "rev": ["S7D", "I21F", "S30P", "A47S", "S62N", "C63F", "L73F", "L78I", "G95R", "S106P"], "tat": ["A21N", "K29N", "C31V", "Y47H", "K53R", "N67V", "I69V", "I76T"], "vif": ["I9V", "T20K", "N22H", "F39V", "R41I", "I63V", "I66V", "R67K", "K77R", "D78E", "Q80H", "I98T", "D117E", "R158Q", "M181R", "N186Y"], "vpr": ["E13V", "R32K", "I63T", "P85R", "R87S"], "vpu": ["A27G", "V43I", "K66T", "P76H", "N81D"]}, "labels": {"aa": "INT: R14K, K111T, D279G; RT-p51: V8I, S105A, E122K, S123N, K173R, T200I, A207T, R238K, A272P, K275R, K277R, K281R, V365I, T377M; RT-p66: V8I, S105A, E122K, S123N, K173R, T200I, A207T, R238K, A272P, K275R, K277R, K281R, V365I, T377M, T470S; gp120: V34K, V37M, H44Y, I56M, E59V, V61I, V73A, N102T, T104N, N105D, A106N, -107V, N108T, I109V, -112T, -115I, E122-, E125N, K143Q, V144T, Q155P, E157D, N159S, N160T, S162T, I180V, T191A, L198F, N251D, A253T, H259N, E265G, N267S, T269I, S272F, T277K, T318A, K319A, E323G, F325Y, N327-, -328N, I332V, L341P, V402A, S412Q, L425I, N432I, -433N, T436E, N446S, I447M, K448L, I468V, R472K; gp41: K77N, Y108F, I118V, K130R, L135I, R144K, A189T, Q199E, E228D, V238A, L244I, A245F, S251N, R277G, A310V, T311I, R324G, A325V, H331N, I332V; nef: I10S, E18D, I20M, P25A, A27T, V33T, S55A, E65G, Y81F, K104Q, Q107R, N116H; p17: T53S, I61L, F79Y, V83A, R91K, V94I, K110R; p2: A7-, N9Q, -10H, -11V, -12N; p24: P14S, L52I, D128E, R132K, S149G; p6: G18E, E19G, I21T, T22N, L24V, K31R, K33R, H36-, P38S; p7: F6W, K20R, T50P; pro: V13I, K20R, R57K, L63I, K70R; rev: S7D, I21F, S30P, A47S, S62N, C63F, L73F, L78I, G95R, S106P; tat: A21N, K29N, C31V, Y47H, K53R, N67V, I69V, I76T; vif: I9V, T20K, N22H, F39V, R41I, I63V, I66V, R67K, K77R, D78E, Q80H, I98T, D117E, R158Q, M181R, N186Y; vpr: E13V, R32K, I63T, P85R, R87S; vpu: A27G, V43I, K66T, P76H, N81D"}}}, {"name": "CRF01_AE_NODE_0000038", "node_attrs": {"div": 0.14006, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A497T", "A797C", "T824C", "G968C", "A1274G", "A1289C", "A1412G", "G1452A", "A1480T", "G1670A", "-1755C", "-1756C", "G1963A", "C2095T", "A2212G", "T2449C", "A2615C", "T2770A", "C2960T", "C2968T", "A2969G", "C3140T", "A3258G", "A3277G", "C3628T", "T3645C", "A3733G", "G3766A", "A4677G", "C4871A", "C4911T", "A5007C", "G5036A", "G5128T", "A5143-", "C5144-", "C5145-", "C5146-", "T5147-", "A5148-", "C5149-", "A5150-", "A5151-", "C5213A", "T5293C", "T5482A", "A5484C", "A5563G", "C5584T", "C5826T", "G6085A", "C6189A", "T6250C", "T6287C", "T6500A", "G6647A", "A6648T", "A6751G", "G6806A", "G6809A", "-6833A", "T6882C", "-6970A", "-6978A", "-6986A", "-6988T", "G7168A", "G7295C", "G7366A", "G7702C", "C7732A", "A7796T", "T7843G", "C7932T", "C8038T", "A8128C", "C8129A", "C8131A", "A8132C", "T8171A", "T8206C", "C8223T", "G8231A", "T8235C", "A8266T", "G8267A", "A8288T", "G8375A", "A8407G", "G8469A", "G8528A"], "RT-p51": ["K174Q", "I292V", "K388R"], "RT-p66": ["K174Q", "I292V", "K388R", "V517A"], "gp120": ["N111K", "-115S", "-116I", "-117G", "-118N", "-120T", "G124K", "Y145H", "I156M", "S216T", "E265I", "I343T", "E481Q"], "gp41": ["E133D", "D143E", "T165S", "S210F", "L290I", "T307I", "A310T", "A322T", "I329F"], "nef": ["Q22R", "A26S", "E28T", "G29E", "V43I"], "p24": ["L15V", "E79D"], "p6": ["V39S"], "p7": ["N5I"], "rev": ["T94Q"], "tat": ["L36I", "P70S", "P75S"], "vif": ["I31V", "S95R", "K141Q", "T188-", "M189-"], "vpr": ["Q8H", "Y15-", "N16-", "E17-", "P37T"]}, "labels": {"aa": "RT-p51: K174Q, I292V, K388R; RT-p66: K174Q, I292V, K388R, V517A; gp120: N111K, -115S, -116I, -117G, -118N, -120T, G124K, Y145H, I156M, S216T, E265I, I343T, E481Q; gp41: E133D, D143E, T165S, S210F, L290I, T307I, A310T, A322T, I329F; nef: Q22R, A26S, E28T, G29E, V43I; p24: L15V, E79D; p6: V39S; p7: N5I; rev: T94Q; tat: L36I, P70S, P75S; vif: I31V, S95R, K141Q, T188-, M189-; vpr: Q8H, Y15-, N16-, E17-, P37T"}}, "children": [{"name": "JX112799", "node_attrs": {"div": 0.16257, "accession": "JX112799", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2010.0}, "Strain_name": {"value": "CYM124"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T131C", "-162G", "-163A", "-166A", "A303C", "A426C", "A437G", "A458G", "C471A", "T485G", "G530A", "G579A", "T583C", "G615A", "T662G", "G693A", "C722T", "A752G", "A923G", "T1175C", "G1253C", "T1310C", "A1350T", "A1442G", "C1478T", "A1607G", "A1691G", "C1753T", "T1784G", "G2173A", "A2227G", "G2311A", "G2380A", "G2413A", "G2463A", "A2498G", "A2519G", "G2630A", "G2755A", "A2770G", "G2803A", "A2829T", "A2918C", "A2919G", "A2956G", "C3030A", "G3037A", "C3055T", "A3061G", "T3303C", "A3361G", "A3388G", "G3463A", "G3477A", "T3544A", "T3545C", "A3643G", "G3644T", "C3712T", "T3755G", "A3808C", "C3826T", "G3869A", "A3934G", "A3937G", "T4039C", "C4162T", "A4228C", "A4427T", "C4534T", "G4573A", "C4595A", "A4646T", "A4650C", "C4665T", "T4742C", "A4862T", "G4870A", "A4880G", "C4914A", "C5006A", "A5061G", "T5102C", "G5153T", "A5154T", "A5247C", "T5251C", "A5291T", "T5292A", "C5351T", "C5425A", "G5556A", "A5581T", "T5616G", "G5619A", "A5622T", "C5651T", "C5687G", "T5695G", "G5717A", "G5729A", "T5731C", "A5781G", "A5818C", "C5834A", "T5844G", "C5980T", "A6022G", "C6024A", "T6034C", "G6092A", "T6163C", "-6173A", "-6174G", "-6175G", "A6176T", "A6177T", "G6179A", "T6180A", "T6181C", "C6183T", "A6186C", "C6190A", "A6191G", "C6201G", "A6206G", "A6214G", "-6225T", "-6226A", "-6227G", "-6228A", "-6229A", "-6230G", "G6274A", "A6324G", "T6325A", "A6326G", "A6327G", "T6328G", "A6329G", "A6330G", "T6331G", "A6392G", "A6425G", "T6545C", "A6725G", "A6734G", "T6735A", "A6736C", "G6743A", "A6799C", "C6826T", "-6834A", "T6835A", "G6848A", "C6925T", "G6948A", "T6949G", "-6952A", "-6953G", "-6954A", "-6955G", "-6967T", "T6968G", "A6972C", "C6974A", "-6975T", "A6979G", "-6983T", "C6984T", "-6990C", "-6992A", "-6993C", "-6994T", "A7007-", "C7008-", "A7044G", "C7045G", "G7062A", "A7101C", "C7107G", "A7148G", "A7149G", "A7151T", "A7154G", "A7158C", "C7159A", "A7160T", "A7161C", "A7163C", "G7180A", "A7195G", "A7265T", "G7390A", "T7544C", "C7590A", "C7603T", "G7628A", "A7629C", "G7633A", "A7640G", "G7668A", "A7676G", "A7711G", "A7722G", "A7818G", "G7831T", "A7885G", "T7913G", "C7929T", "G8001A", "A8011C", "A8029G", "G8030T", "C8047T", "G8159T", "A8171G", "A8233G", "G8330A", "C8331T", "T8371G", "G8373A", "C8382T", "G8393A", "A8446G", "A8536G", "G8590C", "C8651A", "G8666T", "C8699A", "G8732A", "A8739G", "G8743A", "A8798G", "C8810A", "A8870C", "G8904T", "A8922C", "T8951C", "C9023A", "C9039T", "T9097G"], "INT": ["E11D", "V32I", "T218S", "Q274K"], "RT-p51": ["S123N", "I135V", "I142V", "V179I", "E245V", "K275R", "T312N", "M403T"], "RT-p66": ["S123N", "I135V", "I142V", "V179I", "E245V", "K275R", "T312N", "M403T", "R461K", "H483Q", "A517S", "S554A"], "gp120": ["I56M", "P57H", "V80I", "-107R", "-112D", "-119M", "-121D", "-123V", "E125G", "E157G", "N158G", "N159G", "I180V", "T191A", "R291G", "D297N", "K315N", "-326K", "S365K", "-367E", "-368F", "-369N", "-370T", "N397R", "G403E", "S414N", "N416T", "T418R", "N432G", "-433Y", "N434D", "N435T", "T436S", "T437P", "I447M", "T471S"], "gp41": ["F81L", "E109T", "N113D", "R122K", "S125G", "N140S", "K172R", "M176I", "L204V", "P209L", "R233K", "A243S", "G286W", "I290V", "A343I"], "nef": ["I10R", "V11I", "P14S", "Q35R", "G83A", "E108D", "I133V", "R134K", "D156E", "E176D", "A188S", "I194L"], "p17": ["M31L", "L46I", "V82I", "V83A", "V94I", "N109K", "A120T"], "p24": ["T207S"], "p6": ["H35Q"], "rev": ["R14K", "I55L", "S61V", "P67S", "G104V", "V108G"], "tat": ["R17K", "K63E", "I69L", "L74F"], "vif": ["N3K", "N22H", "H27Y", "K92N", "R95K", "I98M", "H110N", "N140K", "I159V", "N186I", "P187Y", "N190-"], "vpr": ["E13D", "P14L", "N48T", "I63Y"], "vpu": ["E5D", "A15V", "A27G", "F30V", "R37K", "R41K", "M71L", "P76H"]}, "labels": {"aa": "INT: E11D, V32I, T218S, Q274K; RT-p51: S123N, I135V, I142V, V179I, E245V, K275R, T312N, M403T; RT-p66: S123N, I135V, I142V, V179I, E245V, K275R, T312N, M403T, R461K, H483Q, A517S, S554A; gp120: I56M, P57H, V80I, -107R, -112D, -119M, -121D, -123V, E125G, E157G, N158G, N159G, I180V, T191A, R291G, D297N, K315N, -326K, S365K, -367E, -368F, -369N, -370T, N397R, G403E, S414N, N416T, T418R, N432G, -433Y, N434D, N435T, T436S, T437P, I447M, T471S; gp41: F81L, E109T, N113D, R122K, S125G, N140S, K172R, M176I, L204V, P209L, R233K, A243S, G286W, I290V, A343I; nef: I10R, V11I, P14S, Q35R, G83A, E108D, I133V, R134K, D156E, E176D, A188S, I194L; p17: M31L, L46I, V82I, V83A, V94I, N109K, A120T; p24: T207S; p6: H35Q; rev: R14K, I55L, S61V, P67S, G104V, V108G; tat: R17K, K63E, I69L, L74F; vif: N3K, N22H, H27Y, K92N, R95K, I98M, H110N, N140K, I159V, N186I, P187Y, N190-; vpr: E13D, P14L, N48T, I63Y; vpu: E5D, A15V, A27G, F30V, R37K, R41K, M71L, P76H"}}}, {"name": "JX960609", "node_attrs": {"div": 0.16399, "accession": "JX960609", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10LNA124"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "G455A", "C476T", "A576G", "A585G", "C586T", "A614T", "A645C", "C723T", "A724T", "A776G", "T782G", "T789C", "A815G", "T902C", "A1090G", "A1142G", "G1173A", "A1226G", "C1247T", "G1253A", "C1289T", "T1451G", "G1493A", "A1525G", "G1697A", "A1701T", "A1718G", "T1749C", "G1760A", "G1779A", "T1787C", "C1826G", "A1839G", "G1845A", "A1879G", "A2006C", "C2072A", "A2108G", "T2158C", "T2195C", "G2222C", "G2248A", "A2482T", "T2499C", "G2566A", "A2693G", "G2704A", "A2722G", "A2734G", "G2764A", "T2905A", "G2947A", "A3058C", "A3280G", "A3293C", "C3294T", "G3473A", "A3532G", "A3543T", "T3545A", "T3652C", "A3667G", "T3865A", "A3866G", "A4084G", "T4085C", "A4090T", "A4183G", "T4216C", "G4276C", "G4637A", "T4701G", "G4708A", "C4728A", "T4774C", "T4780C", "C4865A", "C4889A", "C4890A", "A4900G", "A4994T", "T4995C", "A5045G", "A5086G", "G5141-", "A5142-", "T5152-", "T5286C", "G5403A", "A5421G", "A5426G", "G5437A", "C5438A", "A5564G", "C5578T", "G5599A", "A5611T", "G5635A", "T5636C", "G5652T", "C5713G", "A5781T", "T5793G", "A5805C", "G5839A", "T5850C", "C5860A", "T5861A", "C5862-", "A5863-", "A5864-", "A5926T", "T5955A", "A6009G", "A6031C", "T6134C", "T6145G", "A6159G", "G6179T", "T6181A", "A6184C", "C6187G", "A6188G", "A6189G", "T6193C", "A6195G", "C6196T", "T6199C", "C6201T", "C6202A", "A6203G", "T6204G", "T6220G", "T6241C", "A6270G", "G6277A", "A6303C", "A6318C", "A6319T", "G6323A", 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"I61T"], "vpu": ["T2S", "V10T", "Q36E", "E58D", "D62E", "K66N", "V78I"]}, "labels": {"aa": "INT: I31V, E167D, D288N; RT-p51: I5V, E43Q, I135T, T200A, T400L; RT-p66: I5V, E43Q, I135T, T200A, T400L, D460N, H483L, L484I; gp120: S3N, N5-, N52S, E59D, N102S, I109L, -112G, -119T, -121G, -123A, I126V, D139G, K150T, Q155P, E157N, N160T, S162E, N201K, K262E, I265M, N311G, E312K, -326I, I332D, Q334K, S337I, -376N, -384D, -385T, M406I, A408T, S414V, N416K, N420S, L425I, -433T, T436N, T439I, G443V, S453N, V461I, Q462E; gp41: I24L, I91T, N96T, T136I, V178I, H212Q, E224G, G225E, F263L, I264L, R277Q; nef: R17M, I20L, M48I, R59K, Y81F; p17: M31I, T81A, T84V, E93D, I104L, Q130L; p24: N120S, V148I; p6: T8S, S23P, L24S, D34N; p7: K20R; pro: L10V, K14R, G16E, K70Q, Q92K; rev: R17G, S30P, S31A, S62A, H82T, P100S, V108D; tat: A21N, K63G, P68S, I76T, I77S, P84Q; vif: F39V, R41K, H48N, I63T, V65A, N93K, D101E, L102I, Q105R, S137P, K167R, N186-, P187-; vpr: P14-, I61T; vpu: T2S, V10T, Q36E, E58D, D62E, K66N, V78I"}}}]}]}]}]}]}, {"name": "CRF01_AE_NODE_0000039", "node_attrs": {"div": 0.11399999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T583C", "T1792C", "A3279G", "G4677A", "G5699A", "A6338G", "G6788A", "T6849G", "-6955C", "-7004G", "-7005A", "-7006C", "G7957A", "T8675C"], "RT-p51": ["K395R"], "RT-p66": ["K395R"], "gp120": ["A106-", "E312K", "K319E", "I332S", "S365N"], "p17": ["V83A"], "p2": ["N9H"], "p6": ["L38P"], "rev": ["A37T"], "tat": ["G83D"], "vif": ["V31I"]}, "labels": {"aa": "RT-p51: K395R; RT-p66: K395R; gp120: A106-, E312K, K319E, I332S, S365N; p17: V83A; p2: N9H; p6: L38P; rev: A37T; tat: G83D; vif: V31I"}}, "children": [{"name": "CRF01_AE_NODE_0000040", "node_attrs": {"div": 0.1156, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G424A", "G1586A", "C2127A", "A2566G", "A4774G", "A4951G", "G5864A", "C6198A", "A6263C", "-6340G", "A6791G", "C6792T", "-6833A", "-6834A", "A6935C", "A6936G", "-6956A", "-6958A", "-6981G", "-6982G", "-6984A", "T8032A", "G8404A"], "RT-p51": ["T11K"], "RT-p66": ["T11K"], "gp120": ["D4N", "K127R", "I137L", "E157D", "T313V", "K361R", "-367C", "-384D", "N432G"], "nef": ["R21K"], "p17": ["R30K"], "p6": ["V39S"], "vif": ["K63R", "K122R"]}, "labels": {"aa": "RT-p51: T11K; RT-p66: T11K; gp120: D4N, K127R, I137L, E157D, T313V, K361R, -367C, -384D, N432G; nef: R21K; p17: R30K; p6: V39S; vif: K63R, K122R"}}, "children": [{"name": "U51189", "node_attrs": {"div": 0.13657, "accession": "U51189", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 1993.0}, "Strain_name": {"value": "93TH253"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A16G", "G112A", "C150T", "-162G", "-163A", "-166A", "G425A", "G455A", "C467T", "A513T", "T571A", "G579A", "T662G", "G665A", "C679A", "G697A", "G810A", "C1013T", "A1167C", "G1168A", "C1169A", "A1242G", "C1243T", "T1262C", "T1409C", "A1412G", "A1495C", 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"I101V", "N116H", "Q125H", "M182I", "K192R", "H199R", "Y202F"], "p17": ["I60L", "F79Y", "V82I", "N109K", "T115K", "G121D"], "p2": ["-11A", "-12N"], "p24": ["V27I", "S146Q", "T171V"], "p6": ["R4K", "I21Q", "T22K", "S23-", "L24-", "K27-", "Q28-", "E29-", "Q30-", "K31-"], "p7": ["K10T"], "pro": ["V13I"], "rev": ["K20N"], "tat": ["P3L", "Y47H", "S62R", "N67Y", "N80G"], "vif": ["K37Q", "N93K", "A119T", "R181K"], "vpr": ["P10S", "T49N", "I84F"], "vpu": ["T2H", "P3L", "L4W", "E5K", "I6L", "S7V"]}, "labels": {"aa": "INT: D6N; RT-p51: A286T, A304E, K311R, T312I, A355S; RT-p66: A286T, A304E, K311R, T312I, A355S, V467I, N519S, S553I; gp120: V47I, I56M, -106A, -107N, -109I, -111E, R138I, V154R, I156M, D157N, N158S, N160S, S162E, I180V, L198I, E241K, N261H, K262E, S272F, N273Y, T275K, S278R, I279T, H280S, P285Q, Q287R, F289L, D297N, R299G, A301P, K315N, A318T, -328N, K329R, T330N, N349I, -368I, R391K, A408N, K414N, -433G, T436N, N437E, I447M, S453N, Q462E, R472K; gp41: W99*, K106R, N113D, D143E, 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p6: -25L"}}, "children": [{"name": "FJ185244", "node_attrs": {"div": 0.13326, "accession": "FJ185244", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "VN"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97VNHCM345"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A303T", "A380C", "A412G", "A461C", "A605G", "A606G", "A699G", "G747C", "T992G", "A1089C", "G1173A", "C1280T", "C1351G", "T1451G", "G1452A", "A1464C", "G1476A", "A1607G", "G1725A", "G1732A", "T1749C", "T1791G", "C1826A", "G1845A", "T2017C", "A2222C", "T2392A", "A2560G", "A2579T", "A2698G", "G2878A", "G2921A", "C2944T", "A3029G", "A3193G", "T3412G", "A3637C", "G3685A", "T3755G", "A3761G", "T3793C", "A3866G", "T3928C", "G4063A", "A4495G", "C4652T", "A4661T", "T4702C", "C4728A", "G4765A", "A4865C", "T4883C", "A4900G", "A5093G", "C5116A", "A5159G", "T5162C", "T5292C", "T5333C", "C5438A", "T5439C", "A5462T", "C5478T", "C5511T", "G5599C", "T5602A", "A5611T", "T5648C", "T5659G", 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"E201D"], "p17": ["K26R", "E42D", "R91G", "T122A"], "p2": ["Q8T", "H9N", "M14L"], "p24": ["A6P", "H87Q", "N120H", "V148I", "T207R"], "p6": ["G16R", "G18E", "S23-", "L24P", "-26L", "S39A"], "p7": ["G4S"], "pro": ["L10I", "G16E"], "rev": ["T34N", "D88N", "S106P"], "tat": ["A21D", "K29I", "N80K"], "vif": ["F39S", "H48N", "G60E", "Q105R", "P177H"], "vpr": ["T19A", "I63T"], "vpu": ["T2S", "V14A", "L18A", "R31K", "K32Q"]}, "labels": {"aa": "INT: I31V; RT-p51: E43Q, S162C, V276I, T312A; RT-p66: K43Q, S162C, V276I, T312A, E514D, S554A, I556V; gp120: I56M, H57Y, N102H, -106L, -107T, -109D, -110E, -111N, -112T, -113N, -114V, -115S, -116I, -117G, -118N, -119I, -120T, -121D, -122E, -123V, -124R, E125-, V126-, R127-, E136D, I153T, N160Q, S162E, S181T, I197L, P210S, E240G, K262E, S278G, H280T, K300R, E304K, K322R, T332K, N365S, C367Y, -368P, -370G, -371T, -372M, -375E, -376G, -377Y, -378N, -379G, -380T, -381I, -382N, G401E, S412R, K414R, G432A; gp41: M7V, L54M, K80Q, Y108F, I118T, N140D, P216T, L304F, Q323R, I329L; nef: E64D, E152K, N157T, E201D; p17: K26R, E42D, R91G, T122A; p2: Q8T, H9N, M14L; p24: A6P, H87Q, N120H, V148I, T207R; p6: G16R, G18E, S23-, L24P, -26L, S39A; p7: G4S; pro: L10I, G16E; rev: T34N, D88N, S106P; tat: A21D, K29I, N80K; vif: F39S, H48N, G60E, Q105R, P177H; vpr: T19A, I63T; vpu: T2S, V14A, L18A, R31K, K32Q"}}}, {"name": "CRF01_AE_NODE_0000042", "node_attrs": {"div": 0.11903999999999999, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T571A", "A1442C", "C1444T", "C1692A", "C2694T", "C4977T", "G4978A", "A5581G", "A5699G", "G5711A", "A6210T", "T6211A", "A6212G", "T6213G", "C6216A", "A6217T", "A6219T", "G6221A", "A6222C", "-6225A", "-6226T", "-6227G", "-6228A", "-6229A", "-6230G", "G6267A", "G6849C", "G6948A", "-6970G", "A6984G", "C7134T", "G8105A", "G8216A", "T8505A", "A8942G"], "RT-p51": ["E43K", "T200I"], "RT-p66": ["T200I"], "gp120": ["N105D", "N108-", "R138K"], "gp41": ["A268T", "D305N"], "nef": ["C55S"], "p17": ["F79Y"], "p2": ["Q6H", "A7V", "-11A", "-12N"], "p6": ["P5T"], "rev": ["S86N"], "tat": ["I69V"], "vif": ["R131Y"], "vpu": ["R35K"]}, "labels": {"aa": "RT-p51: E43K, T200I; RT-p66: T200I; gp120: N105D, N108-, R138K; gp41: A268T, D305N; nef: C55S; p17: F79Y; p2: Q6H, A7V, -11A, -12N; p6: P5T; rev: S86N; tat: I69V; vif: R131Y; vpu: R35K"}}, "children": [{"name": "FJ185249", "node_attrs": {"div": 0.13463999999999998, "accession": "FJ185249", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "VN"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97VNAG207"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A458G", "C471A", "G495T", "A521C", "C669A", "T774G", "T988C", "T992G", "A1002T", "A1090G", "G1173A", "T1174C", "A1208G", "A1339G", "T1421C", "C1478T", "G1487A", "G1493A", "A1495G", "G1498A", "C1550T", "A1601C", "T1741C", "G1871T", "A1927G", "A1972G", "G1981T", "A1982G", "T1986C", "A2007G", "A2127C", "G2177A", "A2189G", "A2211C", "C2296T", "T2452C", "G2951A", "G2980A", "A3026C", "T3172A", "G3463A", "G3952A", "G4353A", "A4677G", "A4806C", "G4904A", "T5102C", "A5142T", "C5250A", "T5263C", "T5515C", "G5599A", "T5602A", "A5611T", "G5839A", "G5907A", "A6024C", "A6030G", "T6163C", "T6166C", "A6167-", "A6168-", "T6169-", "T6170-", "T6171-", "G6172-", "A6173-", "C6175-", "T6180C", "A6185T", "A6186T", "C6187G", "A6195G", "A6197G", "T6199C", "A6203G", "T6204C", "A6205T", "G6207A", "A6208C", "G6218C", "A6282G", "T6322A", "A6327G", "A6330G", "G6338A", "A6339G", "G6340T", "A6443C", "G6481A", "C6599A", "A6605G", "C6612T", "C6673T", "A6692C", "C6693A", "-6697G", "A6703-", "G6726A", "T6738C", "A6788G", "A6789C", "A6799C", "G6806A", "T6829C", "A6833C", "A6834C", "-6835T", "A6859G", "C6875T", "A6891T", "A6932T", "A6937C", "-6957T", "-6960A", "-6961T", "-6965A", "-6966C", "-6967C", "-6968A", "-6969T", "-6977G", "-6978A", "G6981A", "-6983T", "-6985T", "-6986A", "-6987A", "-6988T", "-6993A", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", 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"S453N"], "gp41": ["T102S", "K106R", "N140S", "R144K", "D163N", "T165S", "R218S", "P219L", "G225E", "D232G", "T307A", "A312G", "I329F", "A343I"], "nef": ["Y81F", "F85V", "I101V", "Q125H", "N126S", "K144S", "D156N", "K192R", "E201D"], "p17": ["L46I", "A54S", "Q112K"], "p24": ["L15V", "V86A", "H87Q", "I91F", "N120S", "V148T", "K203R"], "p6": ["I21T", "P38S", "S39I"], "p7": ["K10R", "R11K", "Q45H"], "pro": ["D25Y", "Q61H", "I62V", "L63P", "K70R"], "rev": ["T37S"], "tat": ["Y47H", "D83V", "P84S"], "vif": ["I31V", "T74P", "N186Y"], "vpr": ["E13V", "T49N"], "vpu": ["T2S", "V78I"]}, "labels": {"aa": "INT: G193E; RT-p51: K11T, E28K, K32E, K39T, A286T, K311Q; RT-p66: K11T, E28K, K32E, K39T, A286T, K311Q; gp120: R18K, H57P, E59G, K143R, N158S, N159S, I197L, L249I, N251D, A253V, I281M, R291K, D294G, K312A, K315N, A318T, K326P, H346L, T360S, -368I, -370N, -371T, -372M, -373E, -374E, -375C, -376N, -377N, -378N, D384-, T385-, I387T, V418I, T427I, G432T, N435M, S453N; gp41: T102S, K106R, N140S, R144K, D163N, T165S, R218S, P219L, G225E, D232G, T307A, A312G, I329F, A343I; nef: Y81F, F85V, I101V, Q125H, N126S, K144S, D156N, K192R, E201D; p17: L46I, A54S, Q112K; p24: L15V, V86A, H87Q, I91F, N120S, V148T, K203R; p6: I21T, P38S, S39I; p7: K10R, R11K, Q45H; pro: D25Y, Q61H, I62V, L63P, K70R; rev: T37S; tat: Y47H, D83V, P84S; vif: I31V, T74P, N186Y; vpr: E13V, T49N; vpu: T2S, V78I"}}}, {"name": "FJ185252", "node_attrs": {"div": 0.14107, "accession": "FJ185252", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "VN"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97VNAG212"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["A412G", "A424G", "G425C", "C471G", "T531C", "A534C", "C917T", "G920A", "C1299T", "A1586G", "A1691G", "T1752C", "G1963A", "C1985T", "T1986G", "G2023A", "G2332A", "G2411A", "A2579T", "C2584T", "T2613C", "G2629A", "C2960T", "C2975T", "G3001A", "A3027G", "G3279A", "G3796A", "T3946C", "A4030G", "A4096G", "G4145A", "G4237A", "T4321C", "G4697T", "G5065A", "C5132T", "T5237C", "C5239T", "G5272A", "C5425A", "G5587A", "A5864G", "C5920T", "G5972A", "C6026T", "C6067A", "A6159C", "-6174A", "T6181C", "A6183G", "C6190A", "A6192C", "T6193C", "A6195C", "C6196T", "G6207C", "G6218A", "A6232C", "G6260A", "A6261T", "T6287C", "A6326G", "A6329G", "T6331G", "T6337A", "T6358C", "T6372G", "A6375C", "G6376A", "T6403C", "A6406T", "C6410G", "A6417C", "A6425T", "C6428G", "A6430T", "G6431T", "T6436A", "A6455T", "A6461G", "T6468G", "A6471C", "G6479A", "C6482G", "G6503C", "A6516C", "A6520G", "G6526A", "A6529T", "A6646G", "C6684A", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "A6692G", "C6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6742G", "A6786C", "-6835G", "C6860T", "T6895C", "G6936A", "A6937T", "-6957G", "-6960C", "-6961A", "A6962G", "A6963G", "-6971A", "-6972G", "-6973G", "-6974G", "-6975C", "-6976A", "-6977C", "-6978C", "G6979A", "-6983G", "-6985A", "A6989-", "A6990-", "C6991-", 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"G8558A", "G8561A", "T8594G", "G8732A", "C8840T", "A8873T", "T8935A", "A8954G"], "INT": ["A124T", "M154I"], "RT-p51": ["V106I", "S162C", "I173T", "M178I", "P294S", "K311R", "R395K"], "RT-p66": ["V106I", "S162C", "I173T", "M178I", "P294S", "K311R", "R395K"], "gp120": ["N4D", "V40I", "N71K", "N102T", "E136I", "Y145H", "D157G", "N158D", "S161N", "S162N", "I173S", "K174T", "P186A", "H188P", "T191S", "P192A", "A193S", "N201Y", "K203E", "F205C", "N206T", "G209R", "P210A", "V217L", "H221P", "T277K", "S278G", "N311T", "P336S", "R361H", "-368R", "N369T", "-383N", "T385I", "C390N", "R391T", "Q394I", "I396K", "N397I", "W399Q", "Q400L", "V402A", "Q404A", "M406H", "Y407A", "P410A", "I411T", "G413R", "K414S", "N416S", "C417V", "V418A", "S419C", "N420I", "I421S", "G423I", "L426I", "R428V", "D429A", "-433N", "T436K", "N437T", "I468V"], "gp41": ["Y108F", "N166K", "T210I", "R221G", "I264A", "S299N", "A310V", "V311L", "V321Q", "A322T", "R327K", "R334S", "R335T", "R337K", "L340F", "E341K"], "nef": ["S9K", "I10A", "V11-", "G12-", "Q15L", "R17K", "R19K", "Q22H", "V33E", "D38Y", "R71M", "E177D", "L198Q"], "p17": ["K26R", "K30S", "L46V", "S66P", "T67P"], "pro": ["L63C"], "rev": ["T37A", "K39R", "H82R", "E87Q", "P100S"], "tat": ["Q17K", "E71K", "P75S", "D83G"], "vif": ["K37N", "N93K", "R160K"], "vpr": ["P10S", "Y45H"]}, "labels": {"aa": "INT: A124T, M154I; RT-p51: V106I, S162C, I173T, M178I, P294S, K311R, R395K; RT-p66: V106I, S162C, I173T, M178I, P294S, K311R, R395K; gp120: N4D, V40I, N71K, N102T, E136I, Y145H, D157G, N158D, S161N, S162N, I173S, K174T, P186A, H188P, T191S, P192A, A193S, N201Y, K203E, F205C, N206T, G209R, P210A, V217L, H221P, T277K, S278G, N311T, P336S, R361H, -368R, N369T, -383N, T385I, C390N, R391T, Q394I, I396K, N397I, W399Q, Q400L, V402A, Q404A, M406H, Y407A, P410A, I411T, G413R, K414S, N416S, C417V, V418A, S419C, N420I, I421S, G423I, L426I, R428V, D429A, -433N, T436K, N437T, I468V; gp41: Y108F, N166K, T210I, R221G, I264A, S299N, A310V, V311L, V321Q, A322T, R327K, R334S, R335T, R337K, L340F, E341K; nef: S9K, I10A, V11-, G12-, Q15L, R17K, R19K, Q22H, V33E, D38Y, R71M, E177D, L198Q; p17: K26R, K30S, L46V, S66P, T67P; pro: L63C; rev: T37A, K39R, H82R, E87Q, P100S; tat: Q17K, E71K, P75S, D83G; vif: K37N, N93K, R160K; vpr: P10S, Y45H"}}}]}]}]}, {"name": "CRF01_AE_NODE_0000043", "node_attrs": {"div": 0.1175, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["C590T", "G697A", "A1090G", "C1444T", "A2038G", "C2353T", "A2386G", "A3043G", "A3145G", "A4183G", "G4870A", "A4916C", "C5052T", "G5587A", "A6197T", "A6311T", "C6559T", "G6766A", "A6785T", "A7095G", "A7160G", "C8182T", "A8584T", "G8794A", "G8945A"], "gp120": ["K143R", "I153L", "S162-", "N311Y", "T360S", "-367Y", "K414R", "-433D"], "nef": ["Y81F"], "p17": ["G121D"], "p2": ["A7V"], "p24": ["N120S"], "rev": ["P112S"], "tat": ["E71K"], "vif": ["S95N", "Q110H", "P156S"], "vpu": ["R31K"]}, "labels": {"aa": "gp120: K143R, I153L, S162-, N311Y, T360S, -367Y, K414R, -433D; nef: Y81F; p17: G121D; p2: A7V; p24: N120S; rev: P112S; tat: E71K; vif: S95N, Q110H, P156S; vpu: R31K"}}, "children": [{"name": "CRF01_AE_NODE_0000044", "node_attrs": {"div": 0.12568, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G579A", "A647T", "G1313A", "G1586A", "C1627T", "A1643G", "A1644C", "A1656C", "T1741C", "-1745C", "-1753T", "T1828A", "G1845A", "C1853T", "A2075C", "G2134A", "G2682A", "T3139C", "A3241T", "C4258T", "A4826C", "A4865T", "T4991C", "G5087A", "G5131A", "T5147A", "G5179A", "T5237C", "A5355T", "A5357G", "G5599A", "T5602A", "G5619A", "G5711A", "T5851G", "G5954A", "C6116T", "A6194G", "A6195T", "G6234A", "T6325A", "T6385C", "T6466G", "T6487C", "A6683C", "C6684A", "A6692C", "C6693A", "A6779G", "G6809A", "C6826T", "C6861A", "T6888C", "A6932T", "-6957T", "-6958A", "-6959A", "-6960A", "-6963A", "-6980G", "-6981G", "-6987G", "-6988T", "A7005G", "G7033A", "G7058A", "A7151G", "G7182A", "G7702T", "G7734A", "G7759A", "C8009A", "T8032A", "G8219A", "A8348G", "T8450C", "T8456A", "T8509C", "A8536G", "T8701A", "A8792C", "A8917G"], "RT-p51": ["G196E"], "RT-p66": ["G196E"], "gp120": ["E34K", "-106L", "N204K", "T277Q", "K309E", "E319N", "P336H", "M345T", "-376G", "-379N", "-380G", "T436D", "G443E"], "gp41": ["E133D", "R144K", "A306T"], "nef": ["D38E", "V56A", "E65G", "F120Y", "K192R"], "p1": ["N9H"], "p17": ["V82I"], "p6": ["I21T", "-25L", "L50*"], "p7": ["A54V"], "pro": ["G16E", "L63S", "I93L"], "rev": ["A54E"], "vif": ["Q80H", "G182D"], "vpr": ["Y15N", "Y45H", "I84L"], "vpu": ["R35K", "L82V"]}, "labels": {"aa": "RT-p51: G196E; RT-p66: G196E; gp120: E34K, -106L, N204K, T277Q, K309E, E319N, P336H, M345T, -376G, -379N, -380G, T436D, G443E; gp41: E133D, R144K, A306T; nef: D38E, V56A, E65G, F120Y, K192R; p1: N9H; p17: V82I; p6: I21T, -25L, L50*; p7: A54V; pro: G16E, L63S, I93L; rev: A54E; vif: Q80H, G182D; vpr: Y15N, Y45H, I84L; vpu: R35K, L82V"}}, "children": [{"name": "JN248324", "node_attrs": {"div": 0.14800999999999997, "accession": "JN248324", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04TH328531"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G361C", "A410G", "A426C", "C471A", "C596T", "A611T", "G615A", "T662G", "G677A", "A697C", "C771T", "T782C", "T890C", "A899C", "C917T", "T979C", "C1115G", "G1271A", "C1280T", "G1452A", "A1495G", "G1498A", "C1517T", "T1679C", "A1701T", "A1772G", "C1825T", "G1835A", "G1855A", "A1857G", "T1948A", "A1951G", "C1985T", "T1986C", "T2017C", "T2206C", "A2243G", "C2296T", "C2335T", "G2386T", "G2456C", "A2519G", "A2545G", "G2602A", "G2629A", "A2693G", "C2694A", "G2705A", "A2830G", "A2902G", "G2932A", "A2962G", "G3001A", "T3022A", "A3027G", "A3079G", "A3196G", "G3208A", "A3218G", "T3544A", "A3684G", "A3760G", "A3805G", "T3850A", "A3937G", "C4042T", "G4063A", "A4105C", "C4126T", "T4135C", "G4182A", "A4254G", "A4407G", "A4561G", "A4695G", "A4696G", "T4772C", "G4786A", 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"vpu": ["T2L", "A27G", "F30L", "Q36E"]}, "labels": {"aa": "INT: D25E, R136Q, K160R, K211R; RT-p51: I50V, D121H, I142V, M178I, T200E, E204K, K311R, I375V; RT-p66: I50V, D121H, I142V, M178I, T200E, E204K, K311R, I375V, H483Q, K530R; gp120: D4N, N105D, -107T, N108K, -109V, T110K, -111T, -112T, -113N, -114V, -115S, -116Y, -122T, -123D, K140R, R143Q, K150R, Q155N, I156M, N159E, N160T, S161T, L249I, N251D, A253V, L260F, K262E, I279T, H280R, E304T, Y311H, K315E, Q316K, -326K, P335Q, K361E, N365S, -368L, -369K, -370N, -371E, -372T, -373T, -374C, -375N, -377T, -378C, R391K, V402T, D433E, N434S, N435S, N437T, T439I, I468V, R480K; gp41: M7V, K80Q, F81L, Y108E, E110D, N129S, D148E, D163N, N166Q, P209L, G225E, E228K, F263L, I264L, A268T, R277Q, E295Q, A343T; nef: C55S, A56T, I133V, Y135F, R151N, D156N, L198R, E201D, Y203F; p1: I5L; p17: S9T, M31L, L46I, V94I, N109K, D121A; p2: Q8T, H9N; p24: P14S, V83A, D128E; p6: T8S, V39S, P49L; p7: K10R, R11K; pro: V13I, K20R; rev: I18T, R46Q, H82T, S86N, G113A; tat: P6H, D64N; vif: K37G, R67K, K122T, R131S, N140K, L153I; vpr: Y50H; vpu: T2L, A27G, F30L, Q36E"}}}, {"name": "JN248339", "node_attrs": {"div": 0.15044, "accession": "JN248339", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "TH"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05TH130087"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T435C", "A437G", "A458G", "C583T", "G629A", "C691T", "C707T", "A779T", "T788A", "G803A", "G821A", "G977A", "C1040T", "A1089G", "C1098G", "G1127A", "G1173A", "T1174C", "T1181C", "G1192A", "C1295T", "T1329A", "C1440A", "A1442C", "C1453T", "T1547C", "C1644T", "T1676C", "G1766A", "T1784G", "T1787C", "C1792T", "C1825A", "C1826G", "C1833T", "G1963A", "G1969A", "C1985A", "T1986A", "A2056G", "G2117A", "A2230G", "C2236T", "G2273A", "A2297G", "T2369C", "G2380A", "A2389T", "C2464T", "T2499C", "A2551T", "C2575T", "G2602C", "T2613A", "A2614G", "A2616G", "A2626C", "G2656A", "A2680T", "C2689T", "G2704A", 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"tat": ["S23N", "Y47H", "H65R", "P70R"], "vif": ["I31V", "K63T", "R67I", "T68A", "Q91L", "A152V", "T154A", "I159T"], "vpr": ["T49N", "E58I", "Q77N"], "vpu": ["K32A", "N81D"]}, "labels": {"aa": "INT: E10D, I31V, V165I, D253E; RT-p51: V8I, V60I, S68G, I135T, E169D, I173K, K174R, E177D, E245K, R356K, T386I, R395K; RT-p66: V8I, V60I, S68G, I135T, E169D, I173K, K174R, E177D, E245K, R356K, T386I, R395K, S447N, S468A, T470N, R512K, V517I, E529D, Q547K; gp120: H33Q, H57Y, N71K, N102H, -107G, -109I, -111D, E136D, I137L, R138K, Y145S, K150T, N159S, N160K, S161N, -162N, N167S, I197L, H259Q, S278G, I279V, D294E, G307A, T313A, K315N, A318T, N319T, E323R, N327-, -328N, S332V, Y367C, -368I, -369N, -370E, -371T, -374T, -375G, -377S, -378N, V402I, N434T, N435K; gp41: M7L, L54M, I118T, N166S, G230D, L242F, V321L, A325V, W326C, L340F, L345V; nef: V43I, S46T, R59K, D98E, K105R, N116H, Q125H, R151K, V153I, N162S, M168I, I173L; p1: I5F; p17: A83V, A119V; p2: Q6N, -10V, -11N; p24: S120G, P123A, V148T, R154K, S200T; p6: H35Q, P38L, P49Q, Q52*; pro: L10V, T12I, S63N; rev: I19V, Q24E, I59V, S61C, I109V; tat: S23N, Y47H, H65R, P70R; vif: I31V, K63T, R67I, T68A, Q91L, A152V, T154A, I159T; vpr: T49N, E58I, Q77N; vpu: K32A, N81D"}}}]}, {"name": "CRF01_AE_NODE_0000045", "node_attrs": {"div": 0.12802, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T357C", "G615A", "T662G", "A932G", "A968G", "A986G", "C1040T", "A1079C", "G1199A", "C1214T", "T1421G", "A1442C", "G1619A", "A1743-", "C1744-", "T1749-", "C1750-", "C1751-", "T1752-", "A1754-", "A1783T", "G1855A", "T2035C", "C2335T", "C2503T", "C2635T", "C2694T", "A2710G", "C2749T", "C2978T", "T3544G", "G3631A", "C4015T", "G4063A", "T4234C", "C4288T", "A4774C", "T4799C", "A4862G", "A4863C", "G5036A", "G5128T", "T5162C", "T5333C", "A5345G", "C5351T", "G5370A", "C5432A", "G5444A", "A5447C", "G5448A", "T5451C", "C5514A", "A5575C", "C5658T", "T5861G", "G5972A", "A6112G", "T6151A", "T6184C", "A6185T", "G6267T", "A6318C", 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["K63T", "N93Q", "R181M"], "vpr": ["Q8H", "G89S"]}, "labels": {"aa": "RT-p51: T200I; RT-p66: T200I, H483Q; gp120: S3A, V40I, N108-, K127R, R138I, Q155P, I156M, E157D, H280T, Q287K, D294E, K309N, Y311F; gp41: T208I, H212Q, G225E, R259L; nef: G3S, A27T, D98E, N116H, Q125H, N157T, S169N, E174D, E177D, R178G; p17: V94I, N109K; p2: Q6H, -11A, -12N; p6: E20D, I21L, T22L, S23-, L24-, H35L, P36Y, P38S; rev: S31A, T62S; tat: T19K, S23N, K24T, N67H, P73S, I77S; vif: K63T, N93Q, R181M; vpr: Q8H, G89S"}}, "children": [{"name": "GQ845124", "node_attrs": {"div": 0.14503, "accession": "GQ845124", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05GX034"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G361C", "A388G", "C467T", "G542A", "A569G", "C679A", "C681A", "T774G", "G803A", "A1010T", "C1098G", "G1452-", "C1453-", "A1454-", "A1455G", "A1456C", "T1457C", "-1458A", "-1459A", "-1460C", 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"vpu": ["T2L", "V21I", "F30V", "G54E"]}, "labels": {"aa": "INT: N27G, I31V; RT-p51: M403T; RT-p66: M403T, T470N; gp120: H44Y, H57F, N105D, T110-, M133V, N159R, N160S, S161E, V172E, T250A, S272Y, T275M, I281L, F311I, K312E, K315N, A318V, E319G, K322R, -326T, Q334R, N365Y, -368N, -369N, -370S, -371T, -372N, -373N, N385-, N437T, T439I, G443A; gp41: T94P, A96S, T102S, K106R, Y108F, N129S, N160S, M176I, F206L, S239T, L259R, G293S, I298S, D305N, A306S; nef: W5C, I10T, V11R, P25A, M48I, F90S, E98D, H116N, H125Q, I133V, Y135F, R151N, G178R, M182R, E197D; p17: L8I, I60L, V82L, E93D, D121G, T122A, S124N, K127Q; p2: I13V; p24: S120N; p6: W15-, G16-, M17-, V39I; pro: K20R, D35E, L63P, K70R, I93L; rev: K20R, E57D, G111E, N116I; tat: D64N, Q66P; vif: T63I, R67T, Q93R, N95S, R131H; vpr: Y15H, T19A, A93T; vpu: T2L, V21I, F30V, G54E"}}}, {"name": "CRF01_AE_NODE_0000047", "node_attrs": {"div": 0.13372, "clade_membership": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A426C", 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"-31P", "S51L"], "p7": ["K10R", "R11K", "D48E", "T50F", "Q53R", "A54G"], "pro": ["V13I"], "rev": ["A54E", "E57D", "S61I", "T91Q", "V108A", "I109V"], "tat": ["T24A", "N80R"], "vif": ["N95S", "D101E", "T155A", "S156P", "I180T"], "vpr": ["D7N", "P37T", "I61V", "R62K", "I84M"]}, "labels": {"aa": "INT: E11D, N27G, V72I, V165I, D270E; RT-p51: V60I, S162N, I200T, R238K, I244V, A272P, P294T, K311R, R395K, E404D; RT-p66: V60I, S162N, I200T, R238K, I244V, A272P, P294T, K311R, R395K, E404D, K530R; gp120: E34S, I40V, P57L, E59P, N71K, N105D, A106V, -107T, -108W, -109T, T110N, -111V, -112T, -114S, -115T, -116N, -117V, -118P, S119N, -120I, -121G, -122N, -124T, K141Q, V144A, K150R, P155S, M156I, N158G, N160K, S161T, Y163T, I164K, T170S, K212T, V217I, S263P, T275R, R276K, M279-, T280-, I281-, G284-, P285-, G286-, R287-, V288-, F289-, Y290V, K291T, T292M, E294P, I295G, I305V, N309D, F311N, K312E, K315N, A318V, E323G, S332T, H346L, N365M, -368L, -369A, -379K, -381A, G382E, -383D, I395V, G401E, I411V, S412E, G434K, E436D; gp41: K77Q, S107N, E109S, E110D, N113D, N114K, I118T, N129D, E133D, T156A, S163D, N166K, N195K, E225G, S239T, A243S, T270I, R273K, I298T, I329F, A343S; nef: W5L, S9-, I10-, V11-, G12-, Q22R, P25A, -50S, N52-, K92R, E93D, R151S, E152D, D156N, D177H, A188S, L198M, Y202F; p1: N9H; p17: K18R, H89Q, S126G; p2: I13V; p24: L15V, P123A, V148I; p6: T8S, N14D, -23K, -24Q, -25E, -26Q, Q28E, E29H, -31P, S51L; p7: K10R, R11K, D48E, T50F, Q53R, A54G; pro: V13I; rev: A54E, E57D, S61I, T91Q, V108A, I109V; tat: T24A, N80R; vif: N95S, D101E, T155A, S156P, I180T; vpr: D7N, P37T, I61V, R62K, I84M"}}}, {"name": "MW079294", "node_attrs": {"div": 0.15700999999999998, "accession": "MW079294", "clade_membership": {"value": "CRF01_AE"}, "country": {"value": "CN"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05GXD008"}, "LANL_subtype": {"value": "CRF01_AE"}}, "branch_attrs": {"mutations": {"nuc": ["T131-", "A132-", "A136T", "G139A", "T141-", "C142-", "C143-", "C144-", "T145-", 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"D73N", "D75N", "N81D"]}, "labels": {"aa": "INT: R136Q; RT-p51: T11K, E42K, E44D, S163C, F171Y, I173A, Q373H, M403T; RT-p66: T11K, E42K, E44D, S163C, F171Y, I173A, Q373H, M403T, K476R, E514D; gp120: N71S, -107K, -108V, -109D, -111S, -112I, -124N, R127K, M133T, R140K, P155Q, N158Q, S161R, S162N, V172E, I197L, D202E, P210S, N274Y, M279V, I281M, F289Y, K291S, I298V, K300R, E304Q, K307E, E319G, L341P, N365K, T366N, -374T, -375G, -376N, -377E, -379E, -381I, -383S, I414K; gp41: I6M, K80T, E110Q, D148E, N160S, N166H, M176I, G180S, T210I, W246L, H258R, R273Q, R277L, D305N, I329V; nef: G2R, S3N, T27A, Q61H, E65G, K94Q, L100M, R151Q, D156E, I173M, M182R, L198R; p17: F79Y, T84V, T122K, G123-, S124-, S125-, S126-, K127-; p2: H6T, N12K; p24: S120N; p6: W15-, G16-, M17-, Q28D, E29P; p7: G4D, C39Y, K41R; pro: Q61E, R87K; rev: S62T, L64I, T91P, E94K, K115E; tat: N12K, K19N, K29I, I36L, P75S; vif: V65I, Q80H, Q93H, K151R, I159R, R160K, K179R, N186Y; vpr: E13V, Y45L, T49N; vpu: E5Q, S7A, A8S, Q36E, 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"A5796T", "G5808T", "-5809G", "-5810G", "-5812G", "G5837T", "G5838T", "A5840T", "A5846G", "C5862-", "A5863-", "G5864-", "A5865-", "C5884T", "T5887C", "G5965A", "A6037G", "A6044G", "T6046G", "A6087C", "C6097T", "A6131C", "T6163C", "-6177T", "-6180A", "A6185G", "A6186T", "-6189A", "-6195C", "-6196T", "A6197G", "A6230G", "C6238T", "A6286G", "G6323-", "A6333G", "G6339A", "T6395A", "G6451A", "C6469T", "G6526A", "A6581G", "A6647G", "A6669G", "A6682G", "A6683G", "-6689A", "G6716A", "C6729A", "T6733A", "A6742G", "A6754G", "T6769C", "C6777A", "A6812C", "A6818T", "A6820G", "C6857A", "C6858A", "T6895C", "-6962G", "-6963A", "-6964C", "-6967T", "-6968A", "-6969T", "-6971A", "-6973T", "-6994A", "-6995G", "-6996G", "-6997G", "-6998G", "-6999A", "-7000A", "-7001G", "-7002A", "-7003T", "-7005G", "-7009T", "C7012T", "C7020A", "T7107A", "A7108C", "A7126C", "T7144A", "A7158G", "-7162A", "C7171A", "T7192C", "T7228C", "C7250A", "A7255T", "G7276A", "C7324T", "G7390A", "G7459A", "A7470G", "G7517C", "G7633C", "G7658C", "G7668A", "G7807A", "C7843T", "G7883A", "C7935A", "A7936C", "A7938G", "A7971G", "G7977A", "G7995A", "A8032G", "C8038G", "G8050A", "C8065T", "A8069T", "C8080A", "C8092T", "A8093C", "C8095A", "C8106-", "G8117A", "G8144A", "T8176C", "T8203C", "C8221A", "C8223T", "G8234A", "T8235C", "G8240A", "G8242C", "G8280T", "C8311T", "C8320A", "T8366C", "G8385A", "A8386G", "G8387T", "A8402G", "C8406A", "T8440C", "A8441G", "C8445A", "A8446G", "A8458G", "A8465G", "C8477T", "-8487C", "-8490G", "G8499C", "C8514G", "A8531G", "A8540G", "T8546C", "G8558A", "T8585C", "T8594C", "C8688A", "C8699A", "T8711C", "C8720T", "C8741T", "G8753A", "C8756A", "A8793G", "A8794C", "G8795T", "G8807A", "G8814A", "A8816G", "G8834A", "A8837G", "T8847A", "A8851T", "G8864A", "G8868A", "A8870C", "A8874G", "A8916G", "T8923G", "C8928A", "G8929A", "C8978A", "T9073C", "C9078T", "C9093T", "T9097C", "C9108T", "-9109T", "C9133T", "A9135G", "G9136A", "G9137A", "G9175A"], "INT": ["S17N", "I84M", "A124S", "T206S", "Q221S"], "RT-p51": ["T35M", "T39G", "S48T", "D123S", "T173E", "K174R", "K211Q", "D248E", "D250E", "D291E", "E297A", "K357R", "V365I", "E404D"], "RT-p66": ["T35M", "T39G", "S48T", "D123S", "T173E", "K174R", "K211Q", "D248E", "D250E", "D291E", "E297A", "K357R", "V365I", "E404D", "L452M", "V467I", "H483Q", "K530R", "S554A"], "gp120": ["S1N", "S3N", "D4-", "N5-", "T35K", "N64E", "-105D", "I126V", "F131Y", "P155Q", "N160S", "S162N", "S181T", "I243V", "K277E", "A288T", "D294-", "T308K", "K320Q", "R322W", "N327-", "P335K", "-368N", "-373S", "-375E", "-377S", "-381E", "-382E", "-383N", "-384T", "P389Q", "N435S", "T436S", "N437-"], "gp41": ["K56R", "V72L", "E110D", "D113N", "E119Q", "R122K", "V194I", "P211H", "N212S", "E223G", "G225E", "R231K", "S256C", "I264L", "A268G", "T270S", "E272K", "R277L", "N298K", "T307V", "V311T", "E313N", "C326F"], "nef": ["E15S", "I20M", "V33A", "Q35R", "K39R", "A49P", "A53P", "L58V", "E108D", "H116N", "K151A", "E158K", "C163S", "I168M", "C169S", "Q170L", "E176S", "R178G", "I194R", "R196K"], "p17": ["T53S", "E62D", "S72T", "L75I", "V94I", "I107M", "D121A", "S126-", "V128-"], "p2": ["T8N", "-12N"], "p24": ["A14P", "A31G", "S41T", "I91Q", "P92A", "G116A", "E128D"], "p6": ["L1I", "S3N", "G18R", "I21K", "T22-", "S24P", "K31-", "D32-", "P36S", "S51L"], "p7": ["N5G", "Q9P", "I12N", "-13I", "K34R", "R52K"], "pro": ["V13I", "I15V", "G16E", "K20R", "E35D", "Q58E", "L63T", "I93L"], "rev": ["S8D", "K30Q", "T62A", "L64V", "A68T", "L73F", "Q74L", "L78I", "H82S", "L83I", "S86G", "D88G", "G99D"], "tat": ["N7S", "V36L", "R53N", "Q54R", "S62R", "K63E", "I69V", "K71E", "Q76T", "T77A"], "vif": ["G37N", "F39Y", "H73Q", "K92G", "H110Q", "I128T", "V129I", "R130I", "P131H", "N140K", "T155K", "R158G"], "vpr": ["Y15H", "A93T"], "vpu": ["E5V", "A8S", "I13V", "F16S", "L18A", "T24S", "I28V", "R41K", "I43L", "D44E", "D60E", "T61L", "E62S", "E63T", "L67I", "W77-", "D80-", "N81D"]}, "labels": {"aa": "INT: S17N, I84M, A124S, T206S, Q221S; RT-p51: T35M, T39G, S48T, D123S, T173E, K174R, K211Q, D248E, D250E, D291E, E297A, K357R, V365I, E404D; RT-p66: T35M, T39G, S48T, D123S, T173E, K174R, K211Q, D248E, D250E, D291E, E297A, K357R, V365I, E404D, L452M, V467I, H483Q, K530R, S554A; gp120: S1N, S3N, D4-, N5-, T35K, N64E, -105D, I126V, F131Y, P155Q, N160S, S162N, S181T, I243V, K277E, A288T, D294-, T308K, K320Q, R322W, N327-, P335K, -368N, -373S, -375E, -377S, -381E, -382E, -383N, -384T, P389Q, N435S, T436S, N437-; gp41: K56R, V72L, E110D, D113N, E119Q, R122K, V194I, P211H, N212S, E223G, G225E, R231K, S256C, I264L, A268G, T270S, E272K, R277L, N298K, T307V, V311T, E313N, C326F; nef: E15S, I20M, V33A, Q35R, K39R, A49P, A53P, L58V, E108D, H116N, K151A, E158K, C163S, I168M, C169S, Q170L, E176S, R178G, I194R, R196K; p17: T53S, E62D, S72T, L75I, V94I, I107M, D121A, S126-, V128-; p2: T8N, -12N; p24: A14P, A31G, S41T, I91Q, P92A, G116A, E128D; p6: L1I, S3N, G18R, I21K, T22-, S24P, K31-, D32-, P36S, S51L; p7: N5G, Q9P, I12N, -13I, K34R, R52K; pro: V13I, I15V, G16E, K20R, E35D, Q58E, L63T, I93L; rev: S8D, K30Q, T62A, L64V, A68T, L73F, Q74L, L78I, H82S, L83I, S86G, D88G, G99D; tat: N7S, V36L, R53N, Q54R, S62R, K63E, I69V, K71E, Q76T, T77A; vif: G37N, F39Y, H73Q, K92G, H110Q, I128T, V129I, R130I, P131H, N140K, T155K, R158G; vpr: Y15H, A93T; vpu: E5V, A8S, I13V, F16S, L18A, T24S, I28V, R41K, I43L, D44E, D60E, T61L, E62S, E63T, L67I, W77-, D80-, N81D", "clade": "CRF93_cpx"}}, "children": [{"name": "MF372649", "node_attrs": {"div": 0.1407, "accession": "MF372649", "clade_membership": {"value": "CRF93_cpx"}, "country": {"value": "CD"}, "date": {"value": 2008.0}, "Strain_name": {"value": "DRC817"}, "LANL_subtype": {"value": "CRF93_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-215A", "-216A", "-217A", "A302T", "T306A", "G354A", "G361C", "A380T", "G386A", "A398C", "G407A", "T435A", "T485G", "A516C", "G542T", "C558A", "A592G", "T593G", "A604G", "A619G", "T635C", "T636C", "T662G", "A666G", "G671A", "A699G", "A701C", "G702-", "A704C", "A705C", "G706A", "C710G", "-711A", "-712A", "-713G", "-714C", "-716G", "C731T", "G821A", "G829A", "C830T", "A878T", "A881G", "C926T", "G977A", "C978A", "A1007T", "A1010G", "T1052C", "A1074G", "A1127G", "G1184A", "G1199T", "C1220T", "A1226G", "G1232A", "T1271G", "C1292A", "G1301A", "C1316T", "A1319T", "T1344C", "C1350G", "A1361C", "C1362T", "G1388A", "G1424A", "C1535T", "C1610T", "G1664A", "T1681C", "C1693T", "G1731A", "-1741G", "-1744A", "A1771C", "C1783A", "T1796C", "C1831T", "A1891C", "A1932G", "A1963G", "G1968A", "G1976A", "A2005G", "G2008A", "T2011C", "A2059G", "G2074A", "T2075C", "A2131G", "A2230G", "T2323C", "C2353T", "A2386G", "T2449A", "A2461G", "G2462A", "C2644T", "G2714A", "A2887G", "G2914A", "A2925G", "T2935C", "C2942A", "T2944C", "A2969G", "A3046G", "A3071G", "C3095G", "A3097T", "T3118C", "G3127A", "A3148T", "A3154G", "C3178T", "T3187C", "A3193G", "C3225T", "A3226G", "A3230G", "G3231C", "T3256C", "C3274T", "A3280G", "T3412C", "G3477A", "A3478G", "G3550A", "T3566C", "A3630G", "C3688T", "A3715G", "T3742C", "A3760G", "T3793C", "G3808T", "A3825C", "A3839C", "T3850C", "T3865C", "G3884A", "C3892T", "A4087G", "A4090T", "G4131C", "C4132A", "G4267A", "A4273G", "G4294A", "T4396G", "A4495G", "A4498G", "G4623A", "A4650C", "C4652T", "G4677A", "C4679T", "A4691C", "T4718C", "A4788G", "A4901T", "A4944G", "A4946C", "C4965T", "A4968C", "T4973A", "G5014A", "T5072C", "A5122G", "G5143A", "A5146G", "T5194A", "A5246G", "G5276C", "C5280T", "T5293C", "G5359C", "G5382A", "C5398A", "A5431G", "T5439C", "A5499G", "A5509G", "A5535C", "A5548C", "A5557G", "G5558A", "C5559T", "G5563T", "A5564C", "A5576G", "T5577A", "C5578G", "C5602A", "A5653G", "G5654C", "C5663T", "G5700A", "A5704T", "T5718G", "A5733G", "T5847C", "T5852A", "C5869A", "A5935T", "A5938T", "G5939A", "A5957C", "G5972A", "C6014A", "A6015G", "G6029A", "A6030C", "A6065G", "A6066G", "G6121A", "G6133T", "-6165C", "C6166A", "-6167G", "-6169C", "-6170T", "-6171A", "-6172C", "-6173A", "-6174C", "-6175C", "T6178G", "-6179C", "T6181A", "C6183A", "T6184A", "G6185C", 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"-6990T", "G6996A", "G7001A", "C7016A", "A7037T", "C7064A", "A7065G", "G7088A", "A7096G", "A7100C", "A7113C", "T7117A", "C7127A", "G7147T", "A7151G", "A7152G", "A7161C", "-7164A", "T7222C", "A7250T", "G7269A", "A7306G", "G7440A", "T7462G", "A7525T", "T7555C", "A7590G", "T7622A", "A7626T", "G7631T", "G7640A", "A7669G", "A7673G", "G7677A", "A7689G", "T7715G", "G7720A", "C7747A", "G7754T", "C7762A", "A7763T", "A7764C", "A7782G", "G7790A", "A7791G", "G7809C", "G7810A", "A7817C", "T7827C", "T7844C", "T7913C", "-8106A", "A8111G", "A8130G", "G8170A", "T8197G", "G8264A", "C8291T", "T8292G", "C8294A", "G8304C", "G8349A", "G8350A", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "G8376-", "G8377-", "A8378-", "C8382T", "G8436C", "T8456G", "A8469T", "C8494A", "T8505C", "T8539A", "A8584T", "T8640C", "T8646C", "A8656G", "G8732A", "A8798T", "T8835C", "C8849T", "A8858G", "C8870T", "A8917T", "C8951T", "C9068T"], "INT": ["E11D", "N17T", "M22L", "V37I", "S119T", "D207E", "G283D"], "RT-p51": ["E207K", "K277R", "L283I", "I292V", "D324E", "I326V", "Q334D", "T377M", "S379A"], "RT-p66": ["E207K", "K277R", "L283I", "I292V", "D324E", "I326V", "Q334D", "T377M", "S379A", "R461K", "S491P", "K512R"], "gp120": ["N3-", "-5K", "D29N", "E34D", "K35P", "V40I", "Q54R", "E59T", "N71G", "E78T", "K93H", "-106Y", "-107T", "N108M", "-109Q", "-111N", "-112T", "N113T", "-114D", "K127R", "M133A", "K140R", "K141T", "V154E", "N157Y", "N159S", "N161K", "N162K", "N167S", "I173M", "N204Q", "K212R", "K224R", "T255N", "P263T", "N267R", "T269I", "N272S", "S278N", "I279-", "H280-", "I281-", "G284-", "P285-", "G286-", "Q287-", "T288-", "F289-", "Y290V", "A291G", "T292I", "-294P", "K308G", "E309N", "N311T", "T313A", "Q316R", "K319A", "K335E", "S336T", "L341V", "K361A", "N369-", "-374T", "E375S", "-376I", "S377A", "-379F", "-380T", "T384G", "L388I", "I395F", "Q404R", "Q412K", "N414K", "T416Q", "N420T", "L425I", "N433G", "-437A"], "gp41": ["R46K", "H53Q", "M54L", "R74S", "N96S", "S107T", "Y108F", "D110Y", "I124V", "S125N", "D129G", "S138A", "D148E", "A151S", "D153E", "K154S", "N160S", "D163S", "W169S", "I175T", "G268E", "S270A", "L277S", "V307I", "V321I", "L330C", "H331N", "R334T", "F340L"], "nef": ["G3N", "S9-", "I10-", "V11-", "G12-", "P14S", "I16V", "A32P", "D38E", "I43F", "T51N", "C55R", "Y81F", "Y102H", "K105R", "E152D", "S176N", "K192V"], "p17": ["V7I", "S9T", "L34I", "I61L", "K69N", "Y86W", "Q90R", "K95R", "N109K", "S111G", "T122A", "G123-"], "p24": ["S33N", "L83I", "I115V", "P207A"], "p6": ["I1T", "P5L", "K21R", "-22N", "-31T", "K33-", "N47S"], "pro": ["K45R", "R57K", "D60N"], "rev": ["D7A", "E11D", "A15I", "I21E", "G86R", "G90E", "V108I", "*117E"], "tat": ["L8I", "T19A", "I45V", "N53S", "T58P", "S61D", "E63S", "N67R", "P68A"], "vif": ["V13I", "N22H", "V31I", "T68A", "D78E", "Q105H", "I120V", "H127Y", "T128P", "G143E", "K179R", "S186N", "H187R"], "vpr": ["N48D", "E58Q", "A59V", "R85P"], "vpu": ["S16A", "A19V", "I33L", "-69D", "-70Y"]}, "labels": {"aa": "INT: E11D, N17T, M22L, V37I, S119T, D207E, G283D; RT-p51: E207K, K277R, L283I, I292V, D324E, I326V, Q334D, T377M, S379A; RT-p66: E207K, K277R, L283I, I292V, D324E, I326V, Q334D, T377M, S379A, R461K, S491P, K512R; gp120: N3-, -5K, D29N, E34D, K35P, V40I, Q54R, E59T, N71G, E78T, K93H, -106Y, -107T, N108M, -109Q, -111N, -112T, N113T, -114D, K127R, M133A, K140R, K141T, V154E, N157Y, N159S, N161K, N162K, N167S, I173M, N204Q, K212R, K224R, T255N, P263T, N267R, T269I, N272S, S278N, I279-, H280-, I281-, G284-, P285-, G286-, Q287-, T288-, F289-, Y290V, A291G, T292I, -294P, K308G, E309N, N311T, T313A, Q316R, K319A, K335E, S336T, L341V, K361A, N369-, -374T, E375S, -376I, S377A, -379F, -380T, T384G, L388I, I395F, Q404R, Q412K, N414K, T416Q, N420T, L425I, N433G, -437A; gp41: R46K, H53Q, M54L, R74S, N96S, S107T, Y108F, D110Y, I124V, S125N, D129G, S138A, D148E, A151S, D153E, K154S, N160S, D163S, W169S, I175T, G268E, S270A, L277S, V307I, V321I, L330C, H331N, R334T, F340L; nef: G3N, S9-, I10-, V11-, G12-, P14S, I16V, A32P, D38E, I43F, T51N, C55R, Y81F, Y102H, K105R, E152D, S176N, K192V; p17: V7I, S9T, L34I, I61L, K69N, Y86W, Q90R, K95R, N109K, S111G, T122A, G123-; p24: S33N, L83I, I115V, P207A; p6: I1T, P5L, K21R, -22N, -31T, K33-, N47S; pro: K45R, R57K, D60N; rev: D7A, E11D, A15I, I21E, G86R, G90E, V108I, *117E; tat: L8I, T19A, I45V, N53S, T58P, S61D, E63S, N67R, P68A; vif: V13I, N22H, V31I, T68A, D78E, Q105H, I120V, H127Y, T128P, G143E, K179R, S186N, H187R; vpr: N48D, E58Q, A59V, R85P; vpu: S16A, A19V, I33L, -69D, -70Y"}}}, {"name": "CRF93_cpx_NODE_0000001", "node_attrs": {"div": 0.09757, "clade_membership": {"value": "CRF93_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G202-", "A301G", "C362T", "G365A", "G519A", "A569G", "A715-", "C719-", "C879T", "A880C", "G911A", "A1089G", "G1090C", "G1192A", "G1256A", "A1743-", "C1745-", "-1748T", "G1784T", "G1942A", "T2077G", "A2212G", "G2287A", "A2290G", "T2776C", "C2828A", "T2917A", "G2951A", "T3049C", "A3103G", "T3133C", "A3192G", "A3214G", "T3433C", "A3435G", "A3456G", "A3529G", "A3535G", "C3712T", "T3853C", "C4021A", "G4263C", "T4276C", "A4717T", "C4761A", "G5036A", "G5087T", "C5384T", "G5534A", "A5748G", "A5781T", "C5878T", "A5881G", "T5956A", "C5958A", "A6158G", "A6164C", "-6198C", "G6224-", "C6256A", "C6278A", "A6288C", "T6295C", "-6340T", "A6456G", "T6460A", "T6637G", "C6721T", "T6722G", "A6723C", "G6731A", "A6790C", "A6800C", "G6802A", "G6809A", "A6817G", "T6849A", "A6855C", "C6951A", "-6956A", "-6958T", "-6977G", "A7177G", "G7181A", "G7182C", "G7198A", "C7463A", "A7533G", "T7630G", "C7742A", "A7846G", "G7915A", "G8107-", "G8110-", "C8112-", "G8114-", "G8116-", "C8120-", "T8121-", "T8122-", "T8172C", "A8184T", "A8222G", "T8243G", "T8265G", "G8267A", "G8276T", "C8277T", "T8278C", "T8290C", "A8352C", "A8353T", "T8483C", "G8561A", "A8869G", "A8918G", "G8991A"], "RT-p51": ["A286T", "E328D", "K366R"], "RT-p66": ["A286T", "E328D", "K366R", "N447S", "K454R"], "gp120": ["Y145S", "K201R", "D202E", "N261K", "K312N", "I332N", "N334T", "G443T", "L466I"], "gp41": ["K77R", "D109E", "Q147K", "R269H", "V271S", "K272L", "L273K", "L274G", "G275L", "L290S", "Q294L", "W314G", "V321G", "V322I", "A325F"], "nef": ["K4L"], "p17": ["D62N", "I104L"], "p24": ["Q50S", "S120A", "R154K", "E187D"], "p6": ["Q35P"], "tat": ["P3L"], "vif": ["Y44F", "L59I", "R167S"], "vpu": ["K37N", "E58D"]}, "labels": {"aa": "RT-p51: A286T, E328D, K366R; RT-p66: A286T, E328D, K366R, N447S, K454R; gp120: Y145S, K201R, D202E, N261K, K312N, I332N, N334T, G443T, L466I; gp41: K77R, D109E, Q147K, R269H, V271S, K272L, L273K, L274G, G275L, L290S, Q294L, W314G, V321G, V322I, A325F; nef: K4L; p17: D62N, I104L; p24: Q50S, S120A, R154K, E187D; p6: Q35P; tat: P3L; vif: Y44F, L59I, R167S; vpu: K37N, E58D"}}, "children": [{"name": "MF372651", "node_attrs": {"div": 0.13137, "accession": "MF372651", "clade_membership": {"value": "CRF93_cpx"}, "country": {"value": "CD"}, "date": {"value": 2008.0}, "Strain_name": {"value": "DRC653"}, "LANL_subtype": {"value": "CRF93_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "G196-", "G197-", "A198-", "C199-", "T200-", "T201-", "A203-", "A204-", "A205-", "G206-", "C207-", "G208-", "A209-", "A210-", "A211-", "G212-", "T213-", "A214-", "C218-", "T249C", "G251T", "A305T", "G354A", "G407A", "A410G", "A417C", "A513T", "C521T", "T525A", "A527G", "A540C", "G542A", "A562G", "T571A", "A578G", "A645T", "C679A", "C681G", "C731T", "C749T", "C767T", "A774C", "G821A", "G829A", "T992G", "A1025C", "C1040T", "C1062A", "T1063C", "T1121C", "A1134G", "G1388A", "T1409C", "A1415G", "C1421T", "G1433A", "G1443A", "G1487A", "A1501C", "C1535T", "A1587C", "C1676T", "G1731A", "G1739-", "A1740-", "A1742-", "C1752T", "-1773G", "-1774A", "-1775G", "G1779-", "A1780-", "A1781-", "T1785G", "C1787T", "A1793G", "G1794A", "C1826G", "C2044T", "T2066A", "G2074A", "A2098T", "G2113A", "T2206A", "T2347C", "A2406G", "A2416C", "G2459A", "G2463A", "C2575T", "A2579T", "G2580A", "A2641G", "C2644T", "C2671T", "A2698G", "C2726A", "A2829T", "A2842G", "G2869A", "G2902A", "A2918C", "C2985A", "G2993C", "A3027G", "C3055T", "A3079T", "G3151A", "G3196A", "T3197C", "C3359T", "G3427A", "G3463A", "T3493G", "T3496C", "C3504A", "G3523A", "T3530C", "A3544G", "T3598C", "A3629C", "A3751G", "G3770A", "G3880A", "G3916A", "T4039C", "T4145G", "C4162T", "G4176A", "C4181A", "A4195C", "A4243G", "A4246G", "G4294A", "T4558C", "G4685A", "C4752T", "A4778G", "G4782A", "G4797A", "T4967C", "G4981A", "T4991C", "T5016C", "A5050G", "A5056C", "T5087C", "C5160T", "G5179A", "A5210G", "G5226A", "A5240G", "G5276A", "A5277T", "A5284C", "T5357C", "G5382A", "A5444C", "C5451T", "A5462T", "G5463T", "C5482A", "T5484G", "C5539A", "G5556A", "A5557C", "G5565A", "C5578T", "C5584T", "C5611T", "A5612T", "T5621G", "A5622G", "T5636C", "G5647A", "C5664T", "A5711G", "T5778C", "G5802T", "G5845A", "T5851G", "T5852A", "T5884G", "G5907A", "A5914C", "G5963A", "T5971C", "A6001G", "C6007T", "A6009G", "A6023C", "A6024C", "G6076A", "C6116T", "T6160A", "-6165A", "-6167A", "-6169C", "-6170T", "-6171A", "-6172T", "-6173A", "-6174A", "-6175T", "-6179A", "A6180C", "A6189T", "C6195G", "T6196C", "G6197A", "T6242A", "T6246A", "C6263T", "A6275G", "T6287A", "G6303A", "C6318A", "A6320C", "-6323A", "G6368A", "G6578A", "G6583A", "C6618T", "G6631T", "T6634C", "G6640T", "A6649G", "A6654C", "C6660T", "A6668G", "G6682T", "G6683A", "G6693A", "C6713A", "G6725A", "A6728G", "A6729G", "A6780G", "A6781C", "C6812A", "A6821G", "T6860C", "A6907G", "C6925T", "A6951G", "-6957A", "-6966G", "-6970G", "-6972G", "-6974T", "-6975G", "-6976G", "-6978A", "-6979G", "-6990G", "G6997T", "A6999C", "A7002G", "T7003G", "G7005A", "C7008A", "C7024T", "A7027G", "A7089C", "A7096T", "A7101C", "C7108A", "A7123C", "C7126T", "C7127T", "A7155G", "A7163-", "T7165-", "A7169G", "C7170T", "G7256A", "G7269A", "A7275G", "A7282G", "A7297G", "G7310A", "G7311C", "G7322T", "T7324G", "C7433T", "A7492G", "C7597T", "T7622A", "C7623G", "A7632G", "C7645T", "G7688A", "A7701C", "A7705G", "G7717A", "A7732G", "A7734G", "A7818G", "A7918G", "C7921G", "G7970A", "C8047T", "G8102-", "C8103-", "A8104-", "G8105-", "A8108-", "G8109-", "A8111-", "T8113-", "T8115-", "A8117-", "A8118-", "A8119-", "G8170A", "T8171A", "A8191G", "T8197G", "C8203A", "T8209C", "A8228G", "C8232T", "G8255C", "A8288C", "A8297G", "A8323C", "G8356T", "A8370C", "T8374G", "C8412T", "T8492C", "T8501A", "G8514T", "A8525G", "A8533G", "G8540A", "G8554A", "A8655C", "C8711T", "G8774A", "T8786C", "T8789G", "G8793T", "A8798G", "C8810T", "A8812C", "T8813C", "G8817A", "A8827C", "C8867T", "T8903C", "G8905A", "C8906T", "G8916A", "G8982A", "C9068T"], "INT": ["S124A", "G134D", "Q136K", "G163A"], "RT-p51": ["K104R", "E122K", "S123D", "S162Y", "Q211K", "Q245M", "K275Q", "A297E", "E300Q", "K311R", "D324E"], "RT-p66": ["K104R", "E122K", "S123D", "S162Y", "Q211K", "Q245M", "K275Q", "A297E", "E300Q", "K311R", "D324E", "T470N", "K512Q", "V559I"], "gp120": ["R18K", "V37I", "N52S", "N57P", "E78T", "K93Q", "N102E", "T104H", "D105N", "-106Y", "-107N", "-109N", "-111V", "-112I", "-114S", "-115T", "S130T", "K141E", "Q142K", "S145T", "I153V", "I156L", "N161S", "N204K", "V242I", "T255I", "Q259H", "E262D", "N267T", "T269I", "N272G", "R276S", "E277K", "Q287K", "-294R", "K307R", "E309G", "Q320K", "K323E", "S336P", "K361E", "T366S", "-371S", "-372M", "-374W", "-376N", "-380A", "E381G", "T385N", "Q412A", "N418K", "N434S", "S436E", "T439V", "V468I", "K474R"], "gp41": ["G3T", "V7L", "D110G", "D129N", "N133T", "K144R", "K172R", "F206L", "G223R", "A267L", "S290T", "I309V", "A310V", "V318L", "I329L", "I332V"], "nef": ["W5L", "I10L", "V11G", "I16V", "P24S", "A27E", "E28R", "G29R", "V58L", "E64G", "R71K", "K105Q", "D149E", "A151S", "N157T", "G159R", "N162T", "R188H"], "p17": ["V7I", "K28Q", "I60L", "L64M", "K69Q", "I75L", "K76R", "F79Y", "T115K", "Q116E"], "p2": ["V7I"], "p24": ["I15L", "S33N", "H87Q", "E98D", "L111T", "I135V", "E180D"], "p6": ["E20D", "K21-", "P23-", "P25S", "-26P", "S36A", "V39I", "N47S", "L51S"], "p7": ["N12T", "K41Q"], "pro": ["L10V", "L90M"], "rev": ["D7N", "D8E", "R14N", "R17K", "R41Q", "P67S", "C85-", "G86-", "E87-", "G88-", "C89-", "G90-", "T91-", "V108N", "K115E", "*117E"], "tat": ["N23T", "K29I", "L36M", "N53K", "S61R", "P68S", "P70S"], "vif": ["H56Y", "V66I", "G71S", "D78E", "R132K", "S144P", "K155R", "K157T", "H192Y"], "vpr": ["T19I", "R36G", "G41E", "I46V", "E58I"], "vpu": ["Q2L", "V5G", "V10A", "V14I", "K35R", "-69D", "-70Y"]}, "labels": {"aa": "INT: S124A, G134D, Q136K, G163A; RT-p51: K104R, E122K, S123D, S162Y, Q211K, Q245M, K275Q, A297E, E300Q, K311R, D324E; RT-p66: K104R, E122K, S123D, S162Y, Q211K, Q245M, K275Q, A297E, E300Q, K311R, D324E, T470N, K512Q, V559I; gp120: R18K, V37I, N52S, N57P, E78T, K93Q, N102E, T104H, D105N, -106Y, -107N, -109N, -111V, -112I, -114S, -115T, S130T, K141E, Q142K, S145T, I153V, I156L, N161S, N204K, V242I, T255I, Q259H, E262D, N267T, T269I, N272G, R276S, E277K, Q287K, -294R, K307R, E309G, Q320K, K323E, S336P, K361E, T366S, -371S, -372M, -374W, -376N, -380A, E381G, T385N, Q412A, N418K, N434S, S436E, T439V, V468I, K474R; gp41: G3T, V7L, D110G, D129N, N133T, K144R, K172R, F206L, G223R, A267L, S290T, I309V, A310V, V318L, I329L, I332V; nef: W5L, I10L, V11G, I16V, P24S, A27E, E28R, G29R, V58L, E64G, R71K, K105Q, D149E, A151S, N157T, G159R, N162T, R188H; p17: V7I, K28Q, I60L, L64M, K69Q, I75L, K76R, F79Y, T115K, Q116E; p2: V7I; p24: I15L, S33N, H87Q, E98D, L111T, I135V, E180D; p6: E20D, K21-, P23-, P25S, -26P, S36A, V39I, N47S, L51S; p7: N12T, K41Q; pro: L10V, L90M; rev: D7N, D8E, R14N, R17K, R41Q, P67S, C85-, G86-, E87-, G88-, C89-, G90-, T91-, V108N, K115E, *117E; tat: N23T, K29I, L36M, N53K, S61R, P68S, P70S; vif: H56Y, V66I, G71S, D78E, R132K, S144P, K155R, K157T, H192Y; vpr: T19I, R36G, G41E, I46V, E58I; vpu: Q2L, V5G, V10A, V14I, K35R, -69D, -70Y"}}}, {"name": "MF372646", "node_attrs": {"div": 0.13276, "accession": "MF372646", "clade_membership": {"value": "CRF93_cpx"}, "country": {"value": "CD"}, "date": {"value": 2008.0}, "Strain_name": {"value": "DRC367"}, "LANL_subtype": {"value": "CRF93_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "-202T", "-215A", "-216A", "-217A", "G282A", "C300T", "C396T", "A461C", "T485G", "C503A", "A509G", "C558A", "A581G", "A645C", "G683A", "C688A", "C747A", "C771T", "G806A", "C876T", "A887G", "T890C", "G906A", "G908A", "A1017C", "T1079A", "G1112A", "C1115T", "C1261G", "C1262A", "A1263T", "T1271A", "T1299A", "G1313A", "C1330A", "A1495G", "T1502C", "G1567A", "A1588G", "G1664A", "-1741A", "-1746G", "-1747A", "T1792C", "A1793T", "G1819A", "C1825T", "C1831T", "A1855G", "G1861A", "G1894A", "A1985G", "C1986T", "T1996C", "A2029G", "T2107C", "A2304G", "T2315A", "T2319C", "C2353T", "A2374G", "G2387T", "G2462A", "C2464T", "C2467T", "C2596T", "C2615A", "A2627C", "A2637G", "A2645G", "G2664C", "A2692G", "C2720T", "A2734G", "A2750G", "G2764A", "T2778A", "A2808G", "A2815G", "A2828G", "A2846G", "G2847A", "G2878A", "C2885T", "A2920G", "A2962G", "C2975A", "A3019G", "A3067T", "A3079C", "G3127A", "A3136G", "G3221A", "A3230T", "G3268A", "T3436C", "A3487G", "A3574G", "G3667A", "A3676C", "A3817G", "A3835G", "C3857T", "A3937G", "A4012G", "G4027A", "G4109A", "G4148A", "G4156A", "G4262T", "A4420G", "G4549A", "T4682C", "T4697C", "C4703T", "T4706C", "G4765A", "T4769G", "G4774A", "A4820T", "T4835G", "A4863G", "G5030A", "A5057G", "G5058A", "C5091T", "G5128A", "G5131A", "A5278G", "G5296A", "A5302C", "G5385A", "G5386A", "T5412A", "A5448T", "A5462G", "T5491C", "C5496A", "A5535T", "A5637G", "C5641T", "T5677G", "G5683A", "G5730A", "T5799G", "G5805A", "A5867C", "T5870C", "G5882A", "G5972A", "T5992C", "G6029A", "G6044A", "G6076T", "A6086G", "C6087A", "G6121A", "C6131A", "T6155C", "-6165G", "A6168-", "T6177A", "T6178C", "-6179T", "T6181C", "T6186C", "T6187C", "A6192C", "-6200G", "-6201G", "-6202C", "-6203G", "-6204G", "-6205C", "-6206A", "-6207G", "-6208A", "-6209A", "-6210T", "-6211T", "-6212G", "-6213G", "-6214T", "-6215A", "-6216A", "-6217C", "-6218A", "-6219A", "-6220C", "-6221A", "-6222A", "-6223T", "-6224C", "-6225G", "-6226T", "G6230A", "A6236G", "G6253A", "A6261T", "G6267C", "A6278G", "A6281C", "A6282G", "G6284A", "T6290G", "G6311A", "T6322C", "A6324-", "T6325-", "A6329G", "T6331A", "G6333C", "G6336A", "T6337C", "T6341A", "G6345A", "A6346G", "G6442A", "G6466T", "G6490T", "G6577T", "G6581A", "G6647A", "T6655C", "G6669A", "A6686G", "C6692G", "G6725T", "G6732C", "A6733C", "C6752G", "A6773G", "G6774A", "A6799C", "T6818G", "G6819A", "G6820A", "A6823G", "-6833A", "-6834A", "-6835A", "C6850A", "A6886C", "C6895T", "T6898C", "A6926T", "G6935A", "-6957C", "A6959C", "T6961A", "C6964T", "A6965G", "-6966A", "-6970C", "A6971T", "-6972C", "T6973A", "-6974A", "-6975A", "-6976T", "-6978C", "-6979C", "-6980A", "-6981G", "-6982C", "-6983T", "-6984C", "-6985A", "A6986G", "T6988G", "-6990C", "C6991T", "A6992T", "C7014T", "A7020G", "G7088C", "A7100G", "T7130C", "A7133G", "C7134T", "A7152C", "T7153C", "A7162C", "-7164G", "G7168A", "G7197A", "G7199A", "A7239G", "A7268G", "C7313A", "G7315A", "T7325C", "C7328T", "G7366A", "G7441A", "A7471G", "C7474T", "G7534A", "T7615C", "G7640A", "T7681C", "A7700G", "G7712C", "T7738C", "C7755A", "G7769A", "G7773A", "G7790A", "A7795T", "A7819G", "C7906T", "T7912C", "C7921T", "T7932C", "C7951A", "A7984C", "A7992G", "A7996C", "C7999G", "G8001A", "A8011C", "C8037T", "C8103T", "A8104G", "-8106G", "-8107T", "-8110C", "-8112G", "-8114C", "-8116C", "A8119G", "-8120G", "-8121G", "-8122A", "G8126A", "A8130T", "C8131-", "A8132-", "G8133-", "G8143A", "A8227C", "G8254A", "G8255A", "A8284G", "A8323T", "G8357T", "G8386A", "G8388A", "A8408G", "C8440T", "C8487T", "G8490T", "T8492A", "T8539A", "G8590C", "A8604G", "C8607T", "A8608T", "A8701T", "T8766C", "G8767C", "C8768A", "T8770A", "A8804G", "G8818C", "A8834C", "A8885G", "C8904A", "T8914G", "G8923A", "T8993C"], "INT": ["M84I", "V112I", "A125T", "G163S"], "RT-p51": ["K70R", "L74I", "V75A", "A98S", "I178L", "Y181C", "M184V", "G190A", "K219E", "L228H", "K238R", "Q245E", "S251D", "P294T", "A376T", "S379C"], "RT-p66": ["K70R", "L74I", "V75A", "A98S", "I178L", "Y181C", "M184V", "G190A", "K219E", "L228H", "K238R", "Q245E", "S251D", "P294T", "A376T", "S379C", "K527N"], "gp120": ["N3H", "V10I", "V40I", "E59K", "E64K", "E74D", "N102D", "N108-", "T110-", "N113-", "V126I", "N128D", "Y131F", "M133I", "E136V", "R138T", "Q142E", "K143R", "V144M", "S146A", "K150R", "Q155P", "N159G", "S160Y", "N162E", "T172A", "E241D", "V243M", "E265K", "S278G", "H280G", "Y290F", "A291T", "T292I", "G293-", "Q300E", "K307E", "W322E", "-326K", "-327N", "N328-", "N332K", "N358Y", "T366N", "N368T", "N369Q", "-370S", "-371N", "-372A", "-374S", "-376T", "N378G", "E382D", "N383G", "T385I", "T387N", "Q389R", "N414K", "T416E", "T427V", "N433T", "S435N", "-437S", "R448K", "D449N", "K462R", "K472G"], "gp41": ["L4I", "F8L", "L9F", "N133D", "E137Q", "A151E", "A156T", "S157N", "D163N", "I210T", "D230G", "K231N", "D232E", "R233K", "A245V", "A267V", "K298N", "V318I"], "nef": ["W5C", "S15N", "A33V", "P49S", "A50S", "G83A", "S88G", "H89F", "Y120F", "C142P", "F143Y", "G159A", "R188S", "L191R", "K192E", "R194K"], "p17": ["E42D", "A118E"], "p24": ["L6I", "P14S", "P49S", "V59I", "M96L", "A177G", "T178S", "L190M", "T200N"], "p6": ["R18G", "-22D", "L38S", "P49L"], "p7": ["K10R", "R34K", "K41R"], "pro": ["T63V"], "rev": ["D7I", "Q51E", "I55L", "E87S", "G88Q", "C89Q", "G90S", "T91Q", "S92G", "G93T", "T94E", "Q95T", "D99N"], "tat": ["V4I", "N12K", "K24N", "K29R", "N40K", "S75P", "P81Q"], "vif": ["G60E", "D61E", "R63K", "H83Q", "R93G", "G158R", "R181K", "G182D"], "vpr": ["Q66H", "T93A", "G94N"], "vpu": ["S24A", "V26I", "-78D", "-79Y", "-80D", "D81L"]}, "labels": {"aa": "INT: M84I, V112I, A125T, G163S; RT-p51: K70R, L74I, V75A, A98S, I178L, Y181C, M184V, G190A, K219E, L228H, K238R, Q245E, S251D, P294T, A376T, S379C; RT-p66: K70R, L74I, V75A, A98S, I178L, Y181C, M184V, G190A, K219E, L228H, K238R, Q245E, S251D, P294T, A376T, S379C, K527N; gp120: N3H, V10I, V40I, E59K, E64K, E74D, N102D, N108-, T110-, N113-, V126I, N128D, Y131F, M133I, E136V, R138T, Q142E, K143R, V144M, S146A, K150R, Q155P, N159G, S160Y, N162E, T172A, E241D, V243M, E265K, S278G, H280G, Y290F, A291T, T292I, G293-, Q300E, K307E, W322E, -326K, -327N, N328-, N332K, N358Y, T366N, N368T, N369Q, -370S, -371N, -372A, -374S, -376T, N378G, E382D, N383G, T385I, T387N, Q389R, N414K, T416E, T427V, N433T, S435N, -437S, R448K, D449N, K462R, K472G; gp41: L4I, F8L, L9F, N133D, E137Q, A151E, A156T, S157N, D163N, I210T, D230G, K231N, D232E, R233K, A245V, A267V, K298N, V318I; nef: W5C, S15N, A33V, P49S, A50S, G83A, S88G, H89F, Y120F, C142P, F143Y, G159A, R188S, L191R, K192E, R194K; p17: E42D, A118E; p24: L6I, P14S, P49S, V59I, M96L, A177G, T178S, L190M, T200N; p6: R18G, -22D, L38S, P49L; p7: K10R, R34K, K41R; pro: T63V; rev: D7I, Q51E, I55L, E87S, G88Q, C89Q, G90S, T91Q, S92G, G93T, T94E, Q95T, D99N; tat: V4I, N12K, K24N, K29R, N40K, S75P, P81Q; vif: G60E, D61E, R63K, H83Q, R93G, G158R, R181K, G182D; vpr: Q66H, T93A, G94N; vpu: S24A, V26I, -78D, -79Y, -80D, D81L"}}}]}]}, {"name": "NODE_0000787", "node_attrs": {"div": 0.04379, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T49-", "T467C", "G614T", "C747G", "T748C", "A785G", "A803G", "G818A", "C892T", "C893G", "C904T", "T917C", "A920G", "C926T", "T978G", "G989A", "T1214C", "A1247C", "C1292A", "T1299C", "C1316T", "C1362T", "A1418G", "C1439T", "A1446C", "C1492A", "A1586G", "T1681C", "C1724T", "T1728A", "C1730G", "C1749T", "C1768A", "G1858A", "A1981G", "C1986T", "A2057C", "C2083T", "A2215G", "G2728A", "G2872A", "T2944C", "A2986G", "A3019G", "A3034T", "G3165A", "A3218G", "A3220G", "A3490G", "A3535T", "A3616G", "T3628C", "A3630G", "A3674G", "T3970C", "T3977C", "A4063G", "T4117C", "G4176A", "A4228G", "A4695G", "A5056C", "A5246G", "C5248A", "A5376G", "C5602T", "T6148C", "T6178-", "T6184C", "T6523C", "A6936G", "A6937C", "-6990A", "C7012A", "G7088C", "A7094G", "A7095T", "A7101G", "A7102G", "T7411C", "A7477G", "T7625C", "A7941C", "A7947G", "G8264A", "C8390T", "A8812C"], "INT": ["G134N"], "RT-p51": ["P272A", "I375V"], "RT-p66": ["P272A", "I375V", "Q480H", "K512R", "K527E"], "gp120": ["E34D", "T172A", "N204E", "I243M", "E265K", "Q316K", "N328-", "K361G", "-371T", "N414V", "T416R"], "gp41": ["Q213P", "V322G"], "nef": ["K104Q", "N157T"], "p1": ["H9S"], "p17": ["E93D"], "p2": ["T8Q", "A11N"], "p24": ["L6A", "T54M", "T58I"], "p6": ["L1P", "F17M", "P23S", "P30Q"], "vif": ["K157T"], "vpr": ["N48E"], "vpu": ["-78D"]}, "labels": {"aa": "INT: G134N; RT-p51: P272A, I375V; RT-p66: P272A, I375V, Q480H, K512R, K527E; gp120: E34D, T172A, N204E, I243M, E265K, Q316K, N328-, K361G, -371T, N414V, T416R; gp41: Q213P, V322G; nef: K104Q, N157T; p1: H9S; p17: E93D; p2: T8Q, A11N; p24: L6A, T54M, T58I; p6: L1P, F17M, P23S, P30Q; vif: K157T; vpr: N48E; vpu: -78D"}}, "children": [{"name": "NODE_0000788", "node_attrs": {"div": 0.055920000000000004, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T12G", "-161G", "T571A", "-711A", "-713C", "C767T", "T851C", "A866G", "G908T", "G911A", "A1217G", "G1313A", "T1322C", "G1430A", "-1452A", "-1459A", "G1661A", "T1676C", "A1694G", "A1701T", "G1731A", "-1783A", "-1785C", "-1786C", "C1826A", "G1846A", "T1873C", "C2353T", "C2420T", "T2449C", "G2459A", "C2488T", "A2500T", "C2503T", "T2542A", "C2615A", "C2635A", "A2665G", "G2707A", "T2708C", "T2770C", "A2788G", "A2818G", "G2830A", "A2842G", "C2845A", "A3043G", "G3168A", "A3685G", "C3756G", "A5094G", "A5366G", "G5370A", "C5372A", "G5471A", "G5472C", "G5556C", "T5628A", "G5668A", "G5717A", "A5720G", "T5791G", "-5824C", "C5826T", "T5827C", "G5843T", "-5861G", "T6151C", "C6166T", "C6183A", "-6198G", "-6226A", "A6232G", "G6274A", "-6340T", "A6635G", "A6718G", "G6779A", "-6834A", "-6994T", "A7275G", "G7366A", "G7633A", "C7645T", "G7688C", "C7690G", "A7846G", "G7862A", "G7995A", "G8055A", "C8120A", "G8141C", "G8144A", "C8168G", "T8171C", "T8172A", "G8388A", "-8487G", "T8687C", "C8747T", "C8775T", "T8786G", "A8804G", "A8829T", "C8832T", "A8869C", "G8873A", "T8903C", "C8928A", "C8934A", "T8935A", "G8936A", "C8979A"], "RT-p51": ["E122K", "D250E", "R358K"], "RT-p66": ["D250E", "R358K"], "gp120": ["S3A", "-111N", "P155Q", "K472R", "K474R"], "gp41": ["M54L", "Y108Q", "D129Q", "V187I", "E215G", "R231K", "S251N", "L273I", "R276H", "L289V", "L290Q"], "nef": ["E176P", "L198K"], "p17": ["F79Y"], "p2": ["-10T"], "p24": ["L83V", "E180D"], "p6": ["T8S", "G18R"], "pro": ["L10I"], "rev": ["R14T", "T91D", "G98A", "G99D", "S107C", "V108A"], "tat": ["W32Y", "N80D"], "vpr": ["G89R", "N91D"], "vpu": ["V21I", "K38R", "V65A", "-70E", "-71M", "-72G", "-76L", "-79V"]}, "labels": {"aa": "RT-p51: E122K, D250E, R358K; RT-p66: D250E, R358K; gp120: S3A, -111N, P155Q, K472R, K474R; gp41: M54L, Y108Q, D129Q, V187I, E215G, R231K, S251N, L273I, R276H, L289V, L290Q; nef: E176P, L198K; p17: F79Y; p2: -10T; p24: L83V, E180D; p6: T8S, G18R; pro: L10I; rev: R14T, T91D, G98A, G99D, S107C, V108A; tat: W32Y, N80D; vpr: G89R, N91D; vpu: V21I, K38R, V65A, -70E, -71M, -72G, -76L, -79V"}}, "children": [{"name": "results/subtype_trees/CRF45_cpx.nwk", "node_attrs": {"div": 0.08144000000000001, "clade_membership": {"value": "CRF45_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T100C", "A417C", "G424A", "A697C", "A715G", "-716T", "-717A", "C722T", "T734C", "A899G", "A1657G", "T1752C", "T1754-", "C1755-", "C1756-", "A1777G", "A1841G", "A2026G", "G2273A", "C2335T", "C2356T", "A2386T", "A2389T", "A2398G", "C2464T", "A2470G", "G2602A", "G2693A", "A2875G", "C2930T", "G2932A", "C2944T", "G2980A", "A2985C", "G2986A", "T3034A", "A3088G", "A3091G", "A3099G", "T3118A", "T3132A", "A3154G", "A3162G", "A3165T", "G3166A", "T3175C", "G3220A", "C3225T", "A3292G", "G3307A", "G3316A", "T3328C", "T3358C", "T3368C", "A3387C", "C3391A", "G3439A", "G3442A", "T3450A", "A3451G", "G3463A", "C3469T", "T3496C", "T3535A", "T3544C", "C3545T", "G3553A", "A3607G", "G3616A", "C3628T", "G3630A", "G3631A", "G3643T", "C3649T", "G3667A", "C3668T", "G3674C", "A3676G", "A3682C", "T3754C", "A3769G", "A3772G", "A3877G", "G3907A", "A3952G", "T3991A", "C3995A", "G3997A", "C4129T", "G4156A", "A4243G", "T4276G", "A4650C", "T4805A", "C4883T", "A4904G", "C4914T", "T4916C", "A4958T", "T4967C", "C4976A", "G4995A", "C5091T", "C5215T", "C5227A", "C5333T", "G5463A", "G5534A", "A5535G", "G5626T", "C5627T", "G5639C", "A5640C", "C5641T", "T5653G", "T5654C", "C5655T", "A5656C", "G5659C", "T5687A", "A5704G", "A5706G", "G5725A", "A5728T", "A5734T", "A5781G", "G5784A", "T5801G", "-5809G", "-5810G", "A5828T", "A5831T", "T5836G", "G5842A", "T5851C", "A5856G", "-5866C", "T5911C", "A6031C", "T6046G", "A6087C", "A6131C", "-6195A", "-6196C", "G6224-", "G6303A", "A6464G", "A6599T", "A6647C", "A6810C", "T6815C", "A6820G", "C6826G", "-6830G", "-6835C", "T6838-", "C6857T", "C6862T", "T6863G", "-6963A", "-6971A", "-6972A", "-6973T", "-6974A", "-6975C", "-6981G", "-6982G", "A6989G", "G7004-", "C7006-", "A7007-", "C7018T", "T7107A", "G7147T", "C7156T", "A7590C", "G7807A", "A7885G", "A7938G", "A8119G", "T8209C", "G8276C", "C8277T", "T8321C", "A8323C", "A8425C", "A8469G", "-8490G", "G8502A", "A8503G", "A8522G", "G8588A", "T8595G", "A8643G", "A8652C", "C8720T", "C8741T", "C8771T", "G8784A", "C8831T", "T8847A", "A8917G", "G8991A", "A9005G", "T9040A", "C9068T"], "INT": ["L74I", "N134D", "D167E"], "RT-p51": ["V60I", "E297A", "D335G", "F346Y", "K356R", "K357I", "T377M", "K431T", "D432E"], "RT-p66": ["V60I", "E297A", "D335G", "F346Y", "K356R", "K357I", "T377M", "K431T", "D432E", "L452Q", "H480Q", "R512K", "E516D", "E527Q", "E529D"], "gp120": ["N64K", "E78T", "K93Q", "N108-", "I126M", "I153V", "P210L", "I249F", "K265Q", "E309N", "K319A", "H324Q", "-326G", "P335S", "S337A", "-384D", "N433-"], "gp41": ["N96T", "N212S", "V321L", "A325L", "F340L"], "nef": ["E28T", "I43V", "D54S", "F85V", "I101V", "E108D", "V148M", "C169S", "K192R"], "p17": ["K28Q", "R30K", "D121A", "-127G", "V128I"], "p6": ["K33R"], "pro": ["I15V"], "rev": ["D7S", "S8T"], "tat": ["R53K", "Q54H", "Q60H", "T77A"], "vif": ["N22H", "H73Q", "K92R", "H110Y", "A137T", "T170A"], "vpu": ["A7L", "G11A", "F16A", "I17L", "F27Y", "I33V", "R34V", "D40N", "R41W", "I43F", "E66A", "-73H", "-74L", "-75I", "W77G", "V79I"]}, "labels": {"aa": "INT: L74I, N134D, D167E; RT-p51: V60I, E297A, D335G, F346Y, K356R, K357I, T377M, K431T, D432E; RT-p66: V60I, E297A, D335G, F346Y, K356R, K357I, T377M, K431T, D432E, L452Q, H480Q, R512K, E516D, E527Q, E529D; gp120: N64K, E78T, K93Q, N108-, I126M, I153V, P210L, I249F, K265Q, E309N, K319A, H324Q, -326G, P335S, S337A, -384D, N433-; gp41: N96T, N212S, V321L, A325L, F340L; nef: E28T, I43V, D54S, F85V, I101V, E108D, V148M, C169S, K192R; p17: K28Q, R30K, D121A, -127G, V128I; p6: K33R; pro: I15V; rev: D7S, S8T; tat: R53K, Q54H, Q60H, T77A; vif: N22H, H73Q, K92R, H110Y, A137T, T170A; vpu: A7L, G11A, F16A, I17L, F27Y, I33V, R34V, D40N, R41W, I43F, E66A, -73H, -74L, -75I, W77G, V79I", "clade": "CRF45_cpx"}}, "children": [{"name": "CRF45_cpx_NODE_0000001", "node_attrs": {"div": 0.08571000000000001, "clade_membership": {"value": "CRF45_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A302T", "G378A", "G534A", "-714A", "A1002G", "T1003C", "A1151G", "C1598T", "A2395G", "A2920G", "C2953A", "A3031G", "G3766A", "G3787A", "C4042T", "C4181A", "T4391A", "A4952G", "C4967A", "A5051T", "C5160T", "A5161G", "A5285G", "T5415C", "G5482A", "C5611A", "T5735A", "-6167G", "-6172C", "A6195G", "G6284A", "C6318A", "A6465G", "A6525G", "C6717T", "A6734G", "T6735A", "G6743A", "A6821G", "-6958C", "-6964T", "T6973C", "-6983T", "-6984A", "-6985C", "A6990G", "-6995A", "-7162G", "-7164C", "A7238C", "A7626T", "A7799C", "A8204G", "A8219G", "C8294A", "G8317A", "G8424A", "T8636A", "G8888A", "A8922T", "A8924G", "G8977A", "T9097G"], "INT": ["Q136K"], "gp120": ["K224R", "I279V", "A288V", "D297N", "K323E", "K462Q"], "gp41": ["Q108L", "N166H", "E280Q", "I301V", "T306A", "H331N"], "nef": ["D98E", "I194L"], "p17": ["G127S"], "p24": ["I91A"], "vif": ["H192C"], "vpr": ["T19M", "I61V"], "vpu": ["F43Y"]}, "labels": {"aa": "INT: Q136K; gp120: K224R, I279V, A288V, D297N, K323E, K462Q; gp41: Q108L, N166H, E280Q, I301V, T306A, H331N; nef: D98E, I194L; p17: G127S; p24: I91A; vif: H192C; vpr: T19M, I61V; vpu: F43Y"}}, "children": [{"name": "FN392876", "node_attrs": {"div": 0.1262, "accession": "FN392876", "clade_membership": {"value": "CRF45_cpx"}, "country": {"value": "CM"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97CM_MP814"}, "LANL_subtype": {"value": "CRF45_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C40T", "-49A", "A59C", "A66T", "C93A", "T94C", "C127T", "-215A", "-216A", "-217A", "T227A", "A303T", "T341G", "C379A", "G452A", "C456T", "C471A", "C496G", "A497G", "C558T", "A562G", "G579A", "A585G", "C586T", "T636G", "A644G", "C697A", "G702A", "A725G", "C731T", "C773A", "A776G", "G791A", "A836G", "T852A", "G920A", "T944C", "C1040T", "A1070C", "C1094T", "A1115G", "A1134G", "C1178T", "C1187T", "A1205G", "A1292G", "A1313G", "T1385C", "G1443A", "A1588G", "G1589T", "A1642G", "G1673A", "C1681A", "G1685A", "G1687A", "C1693T", "G1720A", "A1743C", "-1746T", "-1747T", "-1748C", "A1765G", "C1786T", "T1792C", "A1839G", "A1857T", "A1867G", "A1894G", "A2003C", "A2154G", "T2195C", "C2199A", "T2206C", "A2284C", "G2293A", "T2338C", "T2356C", "G2456C", "A2459G", "G2462A", "A2463G", "T2464C", "A2579T", "A2612G", "C2613A", "A2716G", "A2728G", "A2767G", "A2809G", "C2909G", "G2926A", "A2937G", "G2957T", "A2977C", "T3045C", "A3097C", "C3100T", "A3205T", "G3218A", "A3226G", "G3250A", "C3271T", "G3398T", "G3451A", "G3490A", "A3508G", "C3542T", "T3566G", "A3630C", "T3643G", "G3664A", "A3733G", "G3756A", "A3816G", "T3844C", "A3874G", "A3890T", "G3916A", "G3925A", "T3946C", "A4076C", "C4079T", "A4150G", "A4189G", "G4243A", "A4407G", "A4522G", "T4701G", "A4735G", "A4740T", "G4774A", "C4965G", "A4976C", "A4988T", "T5043A", "G5059A", "A5063C", "A5090G", "G5094A", "A5173G", "G5179T", "T5188G", "T5293G", "A5302T", "C5303T", "C5306T", "T5314G", "C5412T", "A5431G", "G5437C", "T5451C", "A5461C", "A5463T", "T5484A", "T5491C", "C5511T", "G5558A", "A5587G", "C5614A", "T5627A", "A5628T", "G5629T", "T5641C", "A5643C", "C5659A", "C5679T", "T5684C", "A5687T", "A5707T", "A5711G", "T5728A", "A5742G", "A5788C", "C5789T", "A5790G", "G5845A", "G5856A", "T5857C", "G5893A", "G5902A", "C5911T", "G5917A", "T5980C", "T6025C", "C6031A", "A6037G", "A6066G", "C6131A", "A6158G", "T6160A", "-6165G", "-6169A", "-6170C", "-6171C", "-6173A", "-6174C", "-6175A", "-6177T", "-6178T", "-6179A", "-6180A", "A6183G", "A6186C", "A6188G", "-6189A", "G6198A", "T6199-", "T6246A", "G6253C", "A6273G", "A6303G", "A6304G", "G6311A", "T6322G", "A6326G", "A6330G", "A6333G", "G6336C", "T6337C", "T6409C", "C6427T", "G6451A", "T6460G", "A6461G", "G6466A", "G6481A", "C6482A", "C6483A", "C6545T", "G6561C", "G6569A", "G6575C", "C6618T", "T6634A", "G6635A", "C6641T", "T6643C", "C6647T", "A6648C", "A6669G", "A6685G", "T6688-", "T6690-", "A6691-", "C6692-", "G6693-", "A6695G", "-6697A", "-6698C", "-6699A", "-6700C", "-6701A", "-6702T", "A6709T", "C6721G", "T6733C", "A6736C", "G6774A", "A6778T", "A6779G", "T6787G", "C6797G", "A6801G", "C6807T", "G6820A", "A6823G", "-6831G", "-6832A", "-6833A", "-6838G", "A6839-", "A6840-", "A6841-", "A6855C", "G6948C", "-6956T", "-6957A", "T6961C", "-6962A", "A6965G", "-6966G", "-6967T", "-6968T", "-6969C", "-6970A", "A6971G", "-6976T", "-6980T", "C6991T", "T6994A", "-6996A", "-6997T", "-6998A", "-6999G", "-7000C", "-7001A", "-7002C", "-7003G", "-7004G", "-7005A", "-7006G", "-7007C", "-7009A", "C7020A", "A7089C", "G7094A", "A7100C", "G7101A", "G7102A", "A7108C", "A7113G", "C7124A", "A7152G", "A7155C", "T7156A", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "A7224G", "A7241G", "G7275A", "C7313A", "G7315A", "A7318G", "A7419G", "G7428A", "G7440A", "A7533G", "T7627A", "G7631T", "A7633C", "G7640A", "C7655A", "A7660C", "G7677A", "C7688A", "G7690A", "A7691T", "A7700G", "A7706C", "A7733G", "A7734T", "C7742A", "T7801C", "A7818G", "A7820C", "A7826G", "C7951A", "C7954A", "C7960A", "C7969A", "A7995G", "A8014G", "G8019A", "C8047T", "C8080A", "C8103T", "A8163G", "T8167G", "A8173G", "G8180A", "G8216A", "G8254A", "A8264T", "T8268G", "C8276T", "G8280A", "A8288C", "T8290C", "C8293T", "C8296T", "C8321G", "T8322C", "C8323T", "A8360C", "C8369T", "G8385C", "G8387A", "A8455G", "T8456A", "T8480C", "A8502G", "G8503A", "C8552T", "G8558A", "A8584T", "G8590C", "A8647G", "C8648G", "A8656G", "A8657G", "A8693T", "T8740C", "A8746T", "T8775C", "A8780G", "A8788C", "A8793G", "G8795T", "C8812A", "A8844G", "G8846T", "A8886G", "G8933A", "A8934C", "G8942T", "C9078T", "A9106G", "C9108-", "T9115C", "G9175A"], "INT": ["K14R", "S39C", "M50I", "I101L", "K211R"], "RT-p51": ["K20R", "T35K", "D121H", "K122E", "D123S", "S162C", "T173E", "A200T", "K281R", "A288S", "V317A", "Q334H", "E370D", "V375I", "V435L"], "RT-p66": ["K20R", "T35K", "D121H", "D123S", "S162C", "T173E", "A200T", "K281R", "A288S", "V317A", "Q334H", "E370D", "V375I", "V435L", "H483Y", "S491A", "K512T", "D516E", "S554N"], "gp120": ["S1N", "N71S", "Q93K", "N102E", "T104S", "-105E", "-106P", "-107T", "-108I", "-109N", "T110S", "N111T", "-112D", "-114S", "-115K", "F131Y", "M133I", "K140R", "V144I", "K150R", "V153I", "I156M", "N157D", "N158D", "N159S", "N160S", "N161T", "D202E", "K203E", "E204G", "L210K", "S236T", "E239K", "E241Q", "T255I", "P263S", "Q265S", "N272S", "F289L", "N309E", "N311K", "Q315E", "K316R", "A318V", "N334T", "S365T", "-368Y", "-370N", "T371-", "N378-", "-382G", "-383S", "P389Q", "Q412P", "V414I", "R416Q", "N420S", "L424I", "N435S", "K457R", "I463V", "R474K"], "gp41": ["L4I", "Q39R", "S42N", "R46K", "K77R", "K106N", "E110Y", "D113N", "L118M", "E119D", "S125N", "Q129K", "I130L", "N133D", "I135L", "K144V", "Q147K", "K172R", "I173L", "I175V", "D217E", "K231R", "S239N", "A267V", "N287S", "G293S", "D305N", "L325F", "C326Y", "I329L", "L340A"], "nef": ["E15Q", "D38G", "S54D", "Y81F", "G83A", "Y102W", "K105R", "I133T", "Y135F", "D149A", "K151D", "T157N", "I168V", "P176A", "M182V", "K198Q"], "p1": ["K4R"], "p17": ["A15K", "L46I", "A54G", "A67T", "L75F", "K76R", "V82I", "T84V", "L101V", "A121D", "G123R"], "p2": ["V7I"], "p24": ["I15M", "S41T", "E113D", "I135V"], "p6": ["P1H", "S3N", "P5L", "S14N", "T22P", "S23F", "E29G", "L38S"], "p7": ["K41S"], "pro": ["K14R", "K20I", "K69Q"], "rev": ["A15T", "Q36K", "S56G", "P67S", "L78I", "C107G", "I109V", "G111E"], "tat": ["T19A", "A21P", "K29H", "V36I", "S61N", "K71E", "P81Q", "T82K", "P84Q", "S87*"], "vif": ["G37D", "F39V", "K50R", "S52C", "R63K", "H127E", "R130S", "E134D", "L153I", "R158K", "A170T"], "vpr": ["E25D", "H28Q", "I63M", "Q66H"], "vpu": ["Q2K", "P3T", "L7Y", "A8S", "L18I", "V26A", "Y27F", "V34L", "K35R", "W41R", "T61A", "I75V", "D80N"]}, "labels": {"aa": "INT: K14R, S39C, M50I, I101L, K211R; RT-p51: K20R, T35K, D121H, K122E, D123S, S162C, T173E, A200T, K281R, A288S, V317A, Q334H, E370D, V375I, V435L; RT-p66: K20R, T35K, D121H, D123S, S162C, T173E, A200T, K281R, A288S, V317A, Q334H, E370D, V375I, V435L, H483Y, S491A, K512T, D516E, S554N; gp120: S1N, N71S, Q93K, N102E, T104S, -105E, -106P, -107T, -108I, -109N, T110S, N111T, -112D, -114S, -115K, F131Y, M133I, K140R, V144I, K150R, V153I, I156M, N157D, N158D, N159S, N160S, N161T, D202E, K203E, E204G, L210K, S236T, E239K, E241Q, T255I, P263S, Q265S, N272S, F289L, N309E, N311K, Q315E, K316R, A318V, N334T, S365T, -368Y, -370N, T371-, N378-, -382G, -383S, P389Q, Q412P, V414I, R416Q, N420S, L424I, N435S, K457R, I463V, R474K; gp41: L4I, Q39R, S42N, R46K, K77R, K106N, E110Y, D113N, L118M, E119D, S125N, Q129K, I130L, N133D, I135L, K144V, Q147K, K172R, I173L, I175V, D217E, K231R, S239N, A267V, N287S, G293S, D305N, L325F, C326Y, I329L, L340A; nef: E15Q, D38G, S54D, Y81F, G83A, Y102W, K105R, I133T, Y135F, D149A, K151D, T157N, I168V, P176A, M182V, K198Q; p1: K4R; p17: A15K, L46I, A54G, A67T, L75F, K76R, V82I, T84V, L101V, A121D, G123R; p2: V7I; p24: I15M, S41T, E113D, I135V; p6: P1H, S3N, P5L, S14N, T22P, S23F, E29G, L38S; p7: K41S; pro: K14R, K20I, K69Q; rev: A15T, Q36K, S56G, P67S, L78I, C107G, I109V, G111E; tat: T19A, A21P, K29H, V36I, S61N, K71E, P81Q, T82K, P84Q, S87*; vif: G37D, F39V, K50R, S52C, R63K, H127E, R130S, E134D, L153I, R158K, A170T; vpr: E25D, H28Q, I63M, Q66H; vpu: Q2K, P3T, L7Y, A8S, L18I, V26A, Y27F, V34L, K35R, W41R, T61A, I75V, D80N"}}}, {"name": "EU448295", "node_attrs": {"div": 0.12593000000000001, "accession": "EU448295", "clade_membership": {"value": "CRF45_cpx"}, "country": {"value": "FR"}, "date": {"value": 2004.0}, "Strain_name": {"value": "04FR_AUK"}, "LANL_subtype": {"value": "CRF45_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T10A", "G47T", "-49T", "A59T", "T61A", "C100T", "A159G", "T201C", "A214T", "A303-", "A368G", "C379T", "A380G", "G386A", "C417A", "T434C", "C435T", "A461C", "T485G", "A509G", "C535A", "C558A", "C583T", "G629A", "A632G", "T641C", "G677C", "A717G", "G762A", "G785A", "C827T", "T890C", "G977A", "T1004C", "A1074G", "A1089G", "A1101G", "A1123G", "A1142G", "C1220T", "T1271G", "A1307G", "T1334C", "G1394T", "G1404A", "G1417A", "G1419A", "T1444C", "A1450G", "-1455A", "-1456A", "-1457C", "A1459T", "C1460G", "A1463G", "G1498A", "A1499G", "C1610T", "A1660G", "A1709T", "A1731G", "C1752T", "C1753G", "-1754T", "-1755C", "-1756C", "A1781G", "C1785T", "C1786A", "T1791-", "T1792-", "A1793-", "G1794-", "T1795-", "T1796-", "A1826G", "T1954A", "C1985G", "A2018G", "G2026A", "A2029G", "T2035C", "C2044T", "G2068A", "A2242G", "G2294A", "C2296T", "G2398A", "T2476C", "T2479A", "T2527C", "T2581C", "A2616G", "A2629G", "T2654C", "G2656A", "G2686A", "A2693G", "C2720T", "A2750C", "G2818A", "T2908C", "C2909T", "G2914A", "C2976T", "A2980G", "C3006A", "G3019A", "A3027G", "G3029A", "A3030G", "T3059A", "A3107T", "A3124G", "C3175T", "A3224T", "T3253C", "G3340A", "C3346T", "T3380C", "T3399C", "C3405T", "C3449A", "A3502G", "T3505A", "A3571G", "G3607A", "C3674A", "A3675T", "A3697G", "C3712T", "A3715G", "A3775G", "A3866G", "C3908T", "C3922T", "G3952A", "A3982G", "T4153G", "A4178G", "A4338G", "C4381T", "A4402G", "C4412T", "A4492C", "G4531A", "A4555G", "C4569T", "G4695A", "A4696G", "T4697G", "G4723C", "A4740G", "G4741C", "T4742A", "T4743G", "G4774C", "G4856A", "A4858T", "G4861A", "C4911T", "T4917C", "A4937C", "A4968G", "G5036A", "T5073C", "G5086A", "G5087A", "G5131A", "G5170A", "C5186A", "A5227G", "A5268C", "G5312A", "G5359C", "G5366A", "A5370G", "G5371T", "A5372C", "G5382C", "C5406T", "G5448A", "T5452C", "C5479T", "A5481C", "T5483G", "G5535A", "C5554T", "G5566A", "A5613T", "C5614T", "C5615A", "G5620-", "A5621-", "A5622-", "T5626G", "C5630G", "T5636C", "C5640T", "G5700A", "T5708A", "A5716G", "G5737A", "A5787C", "G5830A", "A5846C", "C5866T", "T5887C", "G5907A", "A5914C", "G5915C", "A5959T", "G5963A", "T5964A", "A6023G", "A6030T", "A6045G", "C6116T", "C6148T", "-6165A", "-6169C", "-6170A", "-6171T", "A6176-", "T6181-", "A6183C", "C6184A", "T6187C", "-6189G", "C6190A", "A6194G", "-6201G", "-6202C", "-6203T", "-6204G", "-6205T", "-6206T", "-6207G", "-6208A", "A6229G", "A6234G", "C6256T", "A6275C", "A6281G", "T6285G", "T6325A", "A6332G", "T6340C", "G6368A", "C6375A", "T6383G", "G6384T", "T6385C", "T6395A", "G6457A", "G6463A", "G6464A", "C6469T", "C6483T", "A6488C", "A6500T", "T6551A", "G6575A", "G6578A", "T6599C", "C6612T", "A6616G", "A6628G", "A6636T", "G6638A", "A6639G", "A6659T", "A6669C", "C6670A", "A6684C", "-6689G", "A6691G", "A6736T", "A6751G", "C6752A", "A6770G", "G6771A", "A6776G", "A6781C", "A6786C", "T6787A", "T6794C", "C6797A", "A6799G", "A6800G", "G6802A", "A6812G", "A6813C", "-6838C", "A6848G", "T6849C", "C6925T", "G6935C", "G6936A", "C6937A", "C6938T", "-6956A", "-6957G", "-6962G", "-6966C", "-6967A", "-6968G", "-6969G", "-6970C", "A6972G", "-6976G", "-6977A", "-6978A", "-6979G", "-6980G", "G6981A", "-6996T", "-6997A", "-6998C", "-6999A", "-7000A", "C7008-", "A7010-", "T7011-", "A7012-", "A7013-", "C7014-", "T7015-", "T7059C", "A7065G", "A7074T", "T7095C", "A7106G", "C7127T", "A7151G", "A7152C", "T7153A", "C7170T", "A7246G", "C7328A", "T7370G", "A7373G", "A7375G", "A7396G", "C7436T", "A7471G", "A7552G", "G7631A", "A7633G", "A7641G", "T7645C", "G7657A", "A7701G", "C7755A", "A7756G", "G7769A", "G7773A", "T7813C", "A7862G", "T7879A", "A7880G", "G7915A", "C7921T", "G7938A", "C8037T", "T8121C", "A8130G", "T8153C", "T8169C", "A8241G", "T8265C", "A8275T", "A8288T", "C8311A", "A8364T", "G8375A", "T8414C", "A8441T", "C8477T", "G8522A", "T8594G", "G8595A", "C8607T", "A8608T", "G8678A", "A8784G", "G8804A", "A8827C", "C8828T", "G8846A", "G8861A", "G8868A", "C8903T", "G8905A", "T8914A", "G8915A", "T8993-", "C9075T", "T9095A", "-9109T", "G9132T", "A9134T", "A9144T", "T9146A"], "INT": ["I31V", "I135V", "K188R", "A265V"], "RT-p51": ["D67N", "K174R", "I178M", "K219Q", "A272S", "P294L", "A304E", "K311R", "E312R", "S322T", "T338S", "M377L", "V435A", "A437V"], "RT-p66": ["D67N", "E122K", "K174R", "I178M", "K219Q", "A272S", "P294L", "A304E", "K311R", "E312R", "S322T", "T338S", "M377L", "V435A", "A437V", "Q452K", "Q527M"], "gp120": ["R18K", "E21Q", "V37K", "N57D", "E59V", "K64R", "T104N", "-105D", "-106I", "-112R", "-114G", "-115S", "K127R", "K141Q", "K143E", "V144R", "N157S", "N160D", "N161S", "A172T", "T174K", "C177V", "S181T", "E204R", "K212Q", "T216S", "L233I", "E241K", "V242I", "F249L", "A253V", "N261V", "E262R", "T269S", "N272T", "K277T", "H280R", "Q300K", "S306D", "K307R", "T308A", "N311T", "Q315K", "K316E", "K320A", "G326D", "I332A", "G361Q", "-368S", "-370D", "-372G", "-373S", "-374T", "-375K", "-376E", "-377Y", "-379G", "-380T", "D384-", "T385-", "T387Q", "V402A", "Q404R", "Y407F", "V414A", "N418E", "-433A", "T436E", "N437T", "T439I"], "gp41": ["L9I", "S23A", "I24V", "E110K", "D113G", "N133S", "A151E", "A156T", "S157N", "I187V", "I193V", "S212N", "A245V", "I273T", "H276R", "Y284H", "V289A", "E313G", "L321T", "G322V", "R324S", "I329F"], "nef": ["S8C", "V85I", "H89F", "M148V", "N162T", "M173I", "P176T", "M182I", "R188H", "L191Q"], "p1": ["K10R"], "p17": ["A15M", "Q28K", "E42D", "A67N", "L75I", "A83V", "K114N", "I128V"], "p2": ["V7A", "Q8T", "T10L", "N11M", "-12M", "I13-"], "p24": ["V11I", "I115V", "S120G", "I124V", "K131R", "D180E", "G225S", "R229K", "V230I"], "p6": ["R18G", "S24C", "P36Y", "L38-", "V39-"], "p7": ["R11K"], "pro": ["I10V", "L63V", "T74A"], "rev": ["S7N", "I102T"], "tat": ["E2D", "Y26H", "Q35Y", "V36S", "H60Y", "D64N", "A77T"], "vif": ["G37R", "S46T", "S52A", "S53A", "R63T", "Q91L", "R92K", "Y111H", "E117D", "H127Q", "I128V", "R167K", "G182D"], "vpr": ["H28N", "E55A", "V70I", "R85P", "R89V", "A93P"], "vpu": ["Q2N", "P3Y", "E5-", "L7V", "A8G", "V10A", "V34K", "K37E", "D44N", "D80A"]}, "labels": {"aa": "INT: I31V, I135V, K188R, A265V; RT-p51: D67N, K174R, I178M, K219Q, A272S, P294L, A304E, K311R, E312R, S322T, T338S, M377L, V435A, A437V; RT-p66: D67N, E122K, K174R, I178M, K219Q, A272S, P294L, A304E, K311R, E312R, S322T, T338S, M377L, V435A, A437V, Q452K, Q527M; gp120: R18K, E21Q, V37K, N57D, E59V, K64R, T104N, -105D, -106I, -112R, -114G, -115S, K127R, K141Q, K143E, V144R, N157S, N160D, N161S, A172T, T174K, C177V, S181T, E204R, K212Q, T216S, L233I, E241K, V242I, F249L, A253V, N261V, E262R, T269S, N272T, K277T, H280R, Q300K, S306D, K307R, T308A, N311T, Q315K, K316E, K320A, G326D, I332A, G361Q, -368S, -370D, -372G, -373S, -374T, -375K, -376E, -377Y, -379G, -380T, D384-, T385-, T387Q, V402A, Q404R, Y407F, V414A, N418E, -433A, T436E, N437T, T439I; gp41: L9I, S23A, I24V, E110K, D113G, N133S, A151E, A156T, S157N, I187V, I193V, S212N, A245V, I273T, H276R, Y284H, V289A, E313G, L321T, G322V, R324S, I329F; nef: S8C, V85I, H89F, M148V, N162T, M173I, P176T, M182I, R188H, L191Q; p1: K10R; p17: A15M, Q28K, E42D, A67N, L75I, A83V, K114N, I128V; p2: V7A, Q8T, T10L, N11M, -12M, I13-; p24: V11I, I115V, S120G, I124V, K131R, D180E, G225S, R229K, V230I; p6: R18G, S24C, P36Y, L38-, V39-; p7: R11K; pro: I10V, L63V, T74A; rev: S7N, I102T; tat: E2D, Y26H, Q35Y, V36S, H60Y, D64N, A77T; vif: G37R, S46T, S52A, S53A, R63T, Q91L, R92K, Y111H, E117D, H127Q, I128V, R167K, G182D; vpr: H28N, E55A, V70I, R85P, R89V, A93P; vpu: Q2N, P3Y, E5-, L7V, A8G, V10A, V34K, K37E, D44N, D80A"}}}]}, {"name": "CRF45_cpx_NODE_0000002", "node_attrs": {"div": 0.08338000000000001, "clade_membership": {"value": "CRF45_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-305A", "T1724C", "C2694T", "A3151G", "T3225A", "G5087C", "A5707G", "G5864A", "T6582G", "A6605G", "-6689A", "G6693A", "A6778C", "-6831G", "G7160A", "A7373T", "C7597T", "T7642C", "C8223T", "A8531G", "T8770A", "G8868C", "C8978A"], "RT-p51": ["A200I", "A272P", "M377Q"], "RT-p66": ["A200I", "A272P", "M377Q"], "gp120": ["D4N", "M243R", "N251D", "-373N", "-377S"], "gp41": ["T307I"], "nef": ["F143Y"], "vif": ["R167S"]}, "labels": {"aa": "RT-p51: A200I, A272P, M377Q; RT-p66: A200I, A272P, M377Q; gp120: D4N, M243R, N251D, -373N, -377S; gp41: T307I; nef: F143Y; vif: R167S"}}, "children": [{"name": "FN392877", "node_attrs": {"div": 0.12571000000000002, "accession": "FN392877", "clade_membership": {"value": "CRF45_cpx"}, "country": {"value": "GA"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97GA_TB45"}, "LANL_subtype": {"value": "CRF45_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-49A", "G52T", "C70T", "T82G", "G83C", "C93A", "G112A", "G116A", "T120-", "G121-", "T122-", "G123-", "C143A", "C144T", "T145A", "C146T", "G148-", "A149-", "C150-", "C151-", "A152-", "C153-", "T154-", "C155-", "T156-", "A157-", "G158-", "A159-", "C160-", "G161-", "G162-", "T163-", "G164-", "T165-", "A166-", "T200C", "A214-", "-217A", "-304G", "A319T", "T372C", "A424C", "C426A", "A431G", "G452A", "C467T", "C471A", "G480A", "T485G", "A518T", "T525A", "G534A", "C539T", "A548G", "A562G", "A569G", "A571T", "C587T", "G612A", "T614G", "T636C", "A654T", "A674G", "G706A", "C707T", "-714G", "G770A", "A774G", "T777A", "G803A", "A806G", "A810G", "C830T", "G978A", "T979C", "A1070G", "A1101G", "A1115C", "T1182C", "T1223C", "A1263T", "A1292C", "G1298A", "C1299T", "G1301A", "G1339A", "A1349G", "T1358C", "G1390C", "G1418A", "A1452G", "C1453T", "G1474A", "G1476A", "A1529G", "A1580G", "G1589A", "C1615G", "G1619A", "G1657A", "G1673A", "G1694A", "A1709G", "A1743T", "-1746T", "-1747C", "-1748C", "A1768T", "A1793G", "G1794A", "C1831T", "G1835A", "G1841A", "G1852A", "A1903C", "A1918G", "A1927G", "T2011A", "A2023C", "A2051G", "T2087C", "G2111A", "A2113C", "G2117A", "A2126C", "A2131G", "A2203G", "G2215A", "A2241G", "C2281T", "T2383C", "G2422A", "A2459G", "G2462A", "T2494C", "T2497C", "A2524G", "T2607A", "A2616G", "A2626C", "T2632G", "T2653C", "T2672C", "G2725A", "A2872G", "T2905C", "A2925G", "G2951A", "C2953A", "C2975T", "G2984A", "T3059G", "T3112C", "T3131C", "T3165C", "T3170G", "G3218A", "A3224C", "G3250A", "G3340A", "C3394T", "T3466C", "T3469A", "T3472A", "T3551C", "T3644C", "G3769A", "A3775C", "C3857T", "G3859A", "A3874G", "A3880G", "T3946C", "A3995C", "C4021T", "G4109A", "T4110C", "A4176G", "A4183C", "A4249G", "G4276T", "C4396A", "C4412T", "A4433G", "G4549A", "C4569T", "G4573A", "G4636A", "T4656C", "G4677A", "A4684G", "C4715T", "G4878A", "C4965G", "A4993C", "A4995G", "A5005G", "T5016A", "A5026T", "T5027C", "C5050A", "C5062G", "A5065G", "G5128A", "G5131A", "A5146G", "G5153C", "A5159G", "G5185A", "T5188G", "A5191G", "C5250A", "T5281A", "T5293G", "C5334A", "A5336T", "G5359C", "G5382T", "C5406T", "T5483C", "T5490C", "T5491A", "G5493A", "A5495C", "C5542G", "G5545A", "G5546-", "A5547-", "A5548-", "A5557G", "A5576C", "A5581G", "A5587G", "A5603T", "C5611A", "A5613T", "C5614G", "A5621T", "T5626-", "T5627-", "A5628-", "G5629A", "C5640T", "T5648C", "C5656T", "A5668G", "T5669G", "C5678T", "A5680C", "T5684C", "G5700A", "G5706A", "A5716G", "A5751G", "A5787T", "T5831C", "G5836-", "G5837-", "G5838-", "G5839-", "A5840-", "T5841-", "G5845A", "T5857C", "A5865G", "A5938C", "A5947G", "A5957G", "A6030T", "T6049C", "T6085G", "A6158G", "T6160A", "T6163C", "A6164-", "T6166-", "A6168-", "A6176-", "-6179C", "-6180A", "A6186T", "T6187C", "-6189C", "C6190A", "G6198A", "T6199C", "-6200A", "-6201C", "-6202T", "-6203G", "-6204G", "-6205A", "-6206A", "-6207T", "-6208A", "-6209A", "-6210A", "-6211G", "-6224G", "-6225A", "A6234G", "T6246A", "G6284A", "C6305A", "T6307A", "G6323A", "G6336T", "T6337A", "A6338C", "G6339T", "T6340G", "G6457T", "G6466T", "G6547A", "A6574C", "G6577T", "G6582A", "C6612T", "A6616G", "C6632T", "A6636C", "G6638A", "A6639C", "A6668G", "A6669G", "A6679C", "C6713A", "G6718A", "C6721T", "T6722G", "A6723C", "T6724G", "G6725A", "A6728G", "C6729A", "A6730T", "G6732A", "T6733C", "A6751G", "G6771C", "T6772A", "A6773G", "G6774C", "C6777G", "A6780G", "A6781C", "T6787G", "A6791G", "G6802T", "G6806A", "G6809A", "C6810A", "A6812G", "C6815T", "A6817G", "A6834-", "C6835T", "-6838C", "A6840C", "T6928C", "-6956T", "-6957T", "-6958C", "-6962G", "-6964G", "-6966C", "-6967A", "-6968G", "-6969C", "-6970A", "A6974G", "C6975T", "-6976C", 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"RT-p51": ["E6N", "V8I", "K11Q", "K49R", "K122E", "D123N", "F171Y", "K174R", "E177D", "K277R", "A286T", "P294S", "A297T", "S322A", "Y346H", "I357T", "S359A", "V375I"], "RT-p66": ["E6N", "V8I", "K11Q", "K49R", "D123N", "F171Y", "K174R", "E177D", "K277R", "A286T", "P294S", "A297T", "S322A", "Y346H", "I357T", "S359A", "V375I"], "gp120": ["N4S", "T35A", "E59V", "H77Q", "N102E", "T104H", "-108N", "-109I", "-112N", "-114T", "-115G", "-116I", "-123K", "-124E", "K127R", "F131Y", "L151I", "Q155P", "N161I", "S162L", "K201N", "E240D", "E241D", "R243K", "A253V", "L260F", "N261A", "E262T", "N272G", "Q287K", "A291T", "T292D", "G293D", "D294I", "S306T", "K307A", "T308S", "N309S", "N311K", "T313A", "K316N", "A318T", "A319K", "K320E", "-328T", "K329-", "-368F", "-370E", "-372A", "-374V", "-375T", "-376G", "N397R", "Q404K", "V414E", "N420T", "N435V", "E479Q"], "gp41": ["L9F", "I24L", "R74A", "T96N", "S102N", "N105S", "S107A", "Q108Y", "D113G", "S125N", "Q129G", "D148E", "A151E", "S165T", "N166K", "M176I", "S239N", "A245V", "N298K", "I309V"], "nef": ["T23A", "D38A", "V43I", "S46R", "G83A", "V85F", "V101I", "Y120F", "M148I", "E152D", "I168M", "S169N", "R178G", "K184T", "K198E"], "p1": ["S9N"], "p17": ["K30T", "L31M", "L46I", "G49S", "L64I", "A67T", "K76R", "Y79F", "D93K", "I107L", "S124N"], "p2": ["T10V"], "p24": ["I15V", "S16T", "I27V", "V83T", "I124V", "E128D", "T178S", "E187D", "R203K", "G220A"], "p6": ["T22S", "Q30L", "P36A", "V39I", "S51L"], "p7": ["R3K", "G4S", "T50S"], "pro": ["V13I", "V15I", "E35D", "I85V"], "rev": ["S7-", "T8S", "D9T", "I21L", "L64V", "A68E", "A98G", "K115E", "*117E"], "tat": ["E2D", "V36A", "L39I", "N40T", "R56G", "G57T", "T58P", "P59H", "H60G", "S61-", "N67T", "I69V", "K71E"], "vif": ["R17K", "K33R", "G37D", "V98I", "H127D", "Q136P", "T137A", "N140S", "S144T", "Y147F", "T155K", "T159R", "K160R", "R181K", "G182D", "H187R", "M189I"], "vpr": ["E17Q", "T19A", "H28Q", "T49N", "I63M", "Q77N", "R85P", "A93S"], "vpu": ["Q2N", "P3A", "E5V", "L7T", "A8-", "V14A", "I21G", "T24I", "I25L", "V26A", "K37E", "I75A", "G77I", "D78N", "I79N", "D80-", "N81-"]}, "labels": {"aa": "INT: I74L, V112T, D134G, Q136H, E167D, T206S, D207E, I220V, A265V; RT-p51: E6N, V8I, K11Q, K49R, K122E, D123N, F171Y, K174R, E177D, K277R, A286T, P294S, A297T, S322A, Y346H, I357T, S359A, V375I; RT-p66: E6N, V8I, K11Q, K49R, D123N, F171Y, K174R, E177D, K277R, A286T, P294S, A297T, S322A, Y346H, I357T, S359A, V375I; gp120: N4S, T35A, E59V, H77Q, N102E, T104H, -108N, -109I, -112N, -114T, -115G, -116I, -123K, -124E, K127R, F131Y, L151I, Q155P, N161I, S162L, K201N, E240D, E241D, R243K, A253V, L260F, N261A, E262T, N272G, Q287K, A291T, T292D, G293D, D294I, S306T, K307A, T308S, N309S, N311K, T313A, K316N, A318T, A319K, K320E, -328T, K329-, -368F, -370E, -372A, -374V, -375T, -376G, N397R, Q404K, V414E, N420T, N435V, E479Q; gp41: L9F, I24L, R74A, T96N, S102N, N105S, S107A, Q108Y, D113G, S125N, Q129G, D148E, A151E, S165T, N166K, M176I, S239N, A245V, N298K, I309V; nef: T23A, D38A, V43I, S46R, G83A, V85F, V101I, Y120F, M148I, E152D, I168M, S169N, R178G, K184T, K198E; p1: S9N; p17: K30T, L31M, L46I, G49S, L64I, A67T, K76R, Y79F, D93K, I107L, S124N; p2: T10V; p24: I15V, S16T, I27V, V83T, I124V, E128D, T178S, E187D, R203K, G220A; p6: T22S, Q30L, P36A, V39I, S51L; p7: R3K, G4S, T50S; pro: V13I, V15I, E35D, I85V; rev: S7-, T8S, D9T, I21L, L64V, A68E, A98G, K115E, *117E; tat: E2D, V36A, L39I, N40T, R56G, G57T, T58P, P59H, H60G, S61-, N67T, I69V, K71E; vif: R17K, K33R, G37D, V98I, H127D, Q136P, T137A, N140S, S144T, Y147F, T155K, T159R, K160R, R181K, G182D, H187R, M189I; vpr: E17Q, T19A, H28Q, T49N, I63M, Q77N, R85P, A93S; vpu: Q2N, P3A, E5V, L7T, A8-, V14A, I21G, T24I, I25L, V26A, K37E, I75A, G77I, D78N, I79N, D80-, N81-"}}}, {"name": "CRF45_cpx_NODE_0000003", "node_attrs": {"div": 0.08978000000000001, "clade_membership": {"value": "CRF45_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C28T", "T94C", "C96T", "A97G", "T1385C", "G1388A", "C1406T", "G1472A", "G1720T", "A1826G", "C2057A", "C2211T", "G2293A", "C2296T", "C2613T", "G2875A", "G2902A", "C3449A", "A4076C", "C4471T", "C4665T", "C4833A", "G4859A", "A5051G", "G5830A", "A6044G", "-6169T", "-6173A", "-6175C", "-6177T", "-6178A", "-6201G", "-6204T", "C6256T", "T6322A", "A6329G", "A6333G", "A6573G", "A6576G", "G6583A", "C6641A", "C6642G", "A6712G", "A6790C", "A6799T", "G6819A", "-6832G", "-6833A", "-6976A", "-6978A", "-6979C", "-6980A", "G6982C", "G6989A", "-7001A", "-7002A", "-7003T", "-7006C", "-7007A", "A7089G", "G7101A", "A7148G", "-7162A", "G7269A", "G7322T", "T7627A", "G7668A", "A7700C", "G8208A", "A8241G", "T8268C"], "INT": ["I101L"], "RT-p51": ["T173I"], "RT-p66": ["E122K", "T173I"], "gp120": ["K64E", "E125-", "M126-", "N158E", "E240G", "E241G", "P263S", "K312N", "N369-", "Q412R", "R416K", "R472K"], "gp41": ["V7F", "R122K", "S302N", "E313G", "G322A"], "p24": ["V83L"], "pro": ["I10V"], "vif": ["H27Y", "H83N"]}, "labels": {"aa": "INT: I101L; RT-p51: T173I; RT-p66: E122K, T173I; gp120: K64E, E125-, M126-, N158E, E240G, E241G, P263S, K312N, N369-, Q412R, R416K, R472K; gp41: V7F, R122K, S302N, E313G, G322A; p24: V83L; pro: I10V; vif: H27Y, H83N"}}, "children": [{"name": "FN392875", "node_attrs": {"div": 0.12621000000000002, "accession": "FN392875", "clade_membership": {"value": "CRF45_cpx"}, "country": {"value": "CD"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97CD_MBS30"}, "LANL_subtype": {"value": "CRF45_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G47A", "C48G", "-49G", "G164A", "G206A", "-215A", "-216G", "-217T", "A303G", "-304A", "G318A", "G386A", "A412G", "G413C", "C417A", "A424G", "C426A", "C496G", "A516C", "A518G", "A540C", "A553C", "A675-", "A676-", "G677-", "A678-", "C679-", "A680-", "C681-", "A682-", "G683-", "C684-", "A685-", "G686-", "G687-", "C688-", "A689-", "-714G", "T718C", "C734T", "G771C", "C773T", "A810G", "T861G", "A863C", "T944A", "G956T", "G978T", "T1064G", "G1085A", "A1089G", "C1094T", "C1136T", "G1217A", "A1313G", "G1353C", "G1354A", "G1396A", "C1440A", "A1441G", "A1442T", "G1443T", "A1452G", "A1486G", "A1492C", "C1517T", "C1523T", "G1586A", "C1615A", "G1673A", "C1676T", "T1723G", "C1724G", "A1736G", "-1746T", "-1747C", "-1748C", "G1777A", "T1787C", "A1857G", "T1909C", "G1912A", "T1954G", "A2002G", "A2075C", "T2101A", "G2134A", "A2137T", "A2140C", "T2209C", "A2212G", "A2241G", "A2242G", "G2248A", "A2317G", "G2398A", "T2497C", "T2499C", "C2533T", "C2584T", "T2597C", "A2602G", "C2605T", "C2671T", "G2686A", "T2689C", "G2755A", "T2824A", "G2842A", "G2921A", "C2968T", "G3004A", "C3013T", "C3075T", "A3079C", "G3099A", "C3140T", "G3158A", "A3164G", "T3165C", "A3168G", "A3225G", "A3454G", "A3478G", "G3490A", "C3544A", "T3566C", "C3577T", "G3581A", "T3644C", "G3680A", "G3756A", "G3836A", "C3863T", "A3866G", "C3889T", "G3952A", "A3973C", "C4015T", "C4042T", "C4079T", "G4109A", "T4110C", "C4181A", "G4267A", "C4288T", "C4412T", "A4427T", "A4433C", "A4438C", "A4439C", "A4440G", "A4577C", "A4598G", "A4693G", "T4697A", "G4727A", 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"R474K"], "gp41": ["I24L", "Q41L", "S42N", "Y75F", "D113E", "N133Q", "N160S", "I193V", "I222T", "E223G", "G225E", "A243S", "T270A", "E280Q", "L340F"], "nef": ["I10L", "P24H", "T28E"], "p17": ["K26S", "Q28K", "K30R", "L31M", "A54G", "I61L", "K69Q", "E73A", "Q113-", "K114-", "T115-", "Q116-", "A121-", "I128T"], "p2": ["Q6S", "V7L", "T10-", "N11A", "-12N"], "p24": ["A14P", "I27V", "S44A", "D71E", "E75D", "M118I", "S120G", "G208Q", "G222E"], "p6": ["S14I", "F15W", "R33K"], "p7": ["K7R", "Q9P", "T50N"], "pro": ["K20R", "I93L"], "rev": ["S7N", "V16I", "I21F", "T62S", "P67S", "A68T", "D88G", "D91N", "C107G"], "tat": ["Q35Y", "S61G", "S62N", "H65Y", "N67I", "P70S", "S87P"], "vif": ["K36R", "G37E", "K77R", "D78E", "D101E", "T157R", "T159R"], "vpr": ["I63S", "Q77H", "G94S"], "vpu": ["P3S", "W23G", "K35N", "K37R", "D44E", "R47K", "G54A", "T61A", "E63K", "L64V", "I79N", "D80N"]}, "labels": {"aa": "INT: A21T, P30S, I31V, V112T, Q136K, T206S, T218S, I220L, Q221H, N222R, I268L, M275V; RT-p51: T39M, K49R, I135T, V276I, A327V, E328D, G335D, A355T, I357A, K358R, Q377R; RT-p66: T39M, K49R, I135T, V276I, A327V, E328D, G335D, A355T, I357A, K358R, Q377R, Q452K, H483Q, S491P, V496I, D529N, S554N; gp120: P15H, Y33D, T35K, V37G, E59D, T78R, K89R, Q93K, N102D, -105G, -106L, -107D, -108M, T110-, N111-, N113-, F131Y, R138K, N159D, N160S, N161K, S162H, K203E, L210E, K212R, T216S, K224R, A253V, N261D, N267T, K277T, A288T, Q300E, K307G, T308N, N311T, Q315S, A318V, K320E, R322Q, S360T, G361Q, T366S, -368N, -372N, N373S, -374T, -375Q, -376N, N378T, -379N, -380N, N418K, L424I, L425I, R428G, N432D, -433D, N435D, N437T, K462Q, L466I, R474K; gp41: I24L, Q41L, S42N, Y75F, D113E, N133Q, N160S, I193V, I222T, E223G, G225E, A243S, T270A, E280Q, L340F; nef: I10L, P24H, T28E; p17: K26S, Q28K, K30R, L31M, A54G, I61L, K69Q, E73A, Q113-, K114-, T115-, Q116-, A121-, I128T; p2: Q6S, V7L, T10-, N11A, -12N; p24: A14P, I27V, S44A, D71E, E75D, M118I, S120G, G208Q, G222E; p6: S14I, F15W, R33K; p7: K7R, Q9P, T50N; pro: K20R, I93L; rev: S7N, V16I, I21F, T62S, P67S, A68T, D88G, D91N, C107G; tat: Q35Y, S61G, S62N, H65Y, N67I, P70S, S87P; vif: K36R, G37E, K77R, D78E, D101E, T157R, T159R; vpr: I63S, Q77H, G94S; vpu: P3S, W23G, K35N, K37R, D44E, R47K, G54A, T61A, E63K, L64V, I79N, D80N"}}}, {"name": "FN392874", "node_attrs": {"div": 0.12138000000000002, "accession": "FN392874", "clade_membership": {"value": "CRF45_cpx"}, "country": {"value": "CD"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97CD_MBFE185"}, "LANL_subtype": {"value": "CRF45_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-49T", "G92A", "C93A", "G161A", "T201C", "A214T", "T227A", "-304G", "A388G", "G395T", "C435A", "A437C", "G480A", "A509G", "C558T", "A562C", "T614C", "G615A", "G648A", "A680G", "G706A", "-714C", "G715A", "T716G", "G785A", "G866A", "G978C", "A1002G", "A1079C", "A1115C", "C1169T", "G1184A", "A1193G", "C1247T", "T1271A", "C1304T", "G1328A", "T1334C", "G1394A", "A1442G", "G1474A", "G1476A", "G1493A", "A1529G", "C1535T", 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"T5602-", "C5630G", "A5644G", "A5787T", "G5861A", "G5907A", "A5916T", "T5956C", "C5974T", "A6030G", "A6103T", "C6115T", "C6148T", "A6164C", "-6165A", "-6167A", "-6170A", "-6171T", "-6172A", "-6174C", "-6179C", "-6180A", "A6182G", "A6183G", "A6186T", "T6187G", "-6189C", "T6199C", "-6200A", "-6202T", "-6203T", "-6205G", "-6206A", "-6207C", "-6208A", "-6209A", "-6210C", "-6211A", "-6212T", "-6213C", "-6214A", "-6215C", "-6216T", "-6217G", "-6218A", "-6219T", "-6220G", "-6221A", "-6222A", "-6223A", "-6224T", "-6225G", "G6227-", "A6228-", "A6229-", "A6230-", "T6231-", "G6232-", "A6233-", "C6263T", "A6276C", "A6281G", "A6324G", "T6331A", "C6347T", "G6368A", "A6430G", "T6436G", "A6449G", "G6451A", "G6458A", "C6483T", "G6490C", "T6590A", "T6599A", "C6618T", "G6635A", "C6647T", "A6648C", "C6670T", "C6708T", "A6714G", "C6752A", "A6753G", "A6754T", "G6767A", "T6772C", "G6774A", "A6776G", "A6779C", "A6781G", "G6809A", "C6810T", "A6821G", "C6824A", "A6825T", "G6826A", "T6828-", "T6829-", "G6830-", 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"T9073C", "A9134T"], "INT": ["S119P", "D134N"], "RT-p51": ["T39I", "I173V", "K211R", "D248N", "S251N", "K277R", "A297V", "S359A", "V375I", "T431P"], "RT-p66": ["T39I", "I173V", "K211R", "D248N", "S251N", "K277R", "A297V", "S359A", "V375I", "T431P", "Q452M", "K465Q", "L469I", "T477A"], "gp120": ["A3T", "R18K", "E21V", "E59G", "T104G", "-105H", "-106S", "-107I", "-108T", "-109T", "T110H", "-112T", "-114N", "-115S", "K127-", "K141T", "K143E", "Q155P", "N159G", "N161E", "A172T", "K199E", "D202N", "K212N", "S246T", "F249I", "T255I", "Q265S", "P285L", "Q287R", "Q300S", "V305I", "T308A", "N309Q", "Q315H", "A319I", "R322K", "K323E", "Q324I", "F325W", "G326-", "-328K", "K329T", "I332V", "-370S", "T371D", "-372K", "-374N", "-375T", "-376D", "-379S", "-380T", "-381E", "-382S", "-383N", "D384S", "Q404R", "V414I", "N418T", "N432V", "-433N", "N435S"], "gp41": ["S23A", "I24V", "D109H", "L118M", "N133H", "S157N", "I210T", "K231R", "A245V", "V289A", "A343L"], "nef": ["E15A", "E18D", "T28V", "A49P", "A50G", "T51N", "C55Q", "K94Q", "K105Q", "H116N", "D149E", "T157N", "L191F", "R192T", "I194V"], "p17": ["K18R", "L34I", "G49S", "L75F", "K76T", "V94I", "S124N", "G127Q"], "p24": ["E128D", "D180E"], "p6": ["S14L", "S24P", "V39I"], "p7": ["R3K", "G4S"], "rev": ["L13I", "R17K", "I55L", "L73F", "A98G"], "tat": ["E2D", "T19A", "Q35P", "V36S", "P59H", "S75P"], "vif": ["V31I", "D61E", "T74P", "V98I", "E117D", "T155P", "R158K", "H187R", "T188I"], "vpr": ["T19A", "H28T", "A93S"], "vpu": ["A8G", "I13V"]}, "labels": {"aa": "INT: S119P, D134N; RT-p51: T39I, I173V, K211R, D248N, S251N, K277R, A297V, S359A, V375I, T431P; RT-p66: T39I, I173V, K211R, D248N, S251N, K277R, A297V, S359A, V375I, T431P, Q452M, K465Q, L469I, T477A; gp120: A3T, R18K, E21V, E59G, T104G, -105H, -106S, -107I, -108T, -109T, T110H, -112T, -114N, -115S, K127-, K141T, K143E, Q155P, N159G, N161E, A172T, K199E, D202N, K212N, S246T, F249I, T255I, Q265S, P285L, Q287R, Q300S, V305I, T308A, N309Q, Q315H, A319I, R322K, K323E, Q324I, F325W, G326-, -328K, K329T, I332V, -370S, T371D, -372K, -374N, -375T, -376D, -379S, -380T, -381E, -382S, -383N, D384S, Q404R, V414I, N418T, N432V, -433N, N435S; gp41: S23A, I24V, D109H, L118M, N133H, S157N, I210T, K231R, A245V, V289A, A343L; nef: E15A, E18D, T28V, A49P, A50G, T51N, C55Q, K94Q, K105Q, H116N, D149E, T157N, L191F, R192T, I194V; p17: K18R, L34I, G49S, L75F, K76T, V94I, S124N, G127Q; p24: E128D, D180E; p6: S14L, S24P, V39I; p7: R3K, G4S; rev: L13I, R17K, I55L, L73F, A98G; tat: E2D, T19A, Q35P, V36S, P59H, S75P; vif: V31I, D61E, T74P, V98I, E117D, T155P, R158K, H187R, T188I; vpr: T19A, H28T, A93S; vpu: A8G, I13V"}}}]}]}]}, {"name": "results/subtype_trees/CRF09_cpx.nwk", "node_attrs": {"div": 0.09989, "clade_membership": {"value": "CRF09_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-49G", "-215A", "-216T", "-217A", "-304T", "-305T", "C362T", "C426A", "C471G", "G480A", "A503G", "A516C", "A518G", "A541G", "A619G", "G696A", "G709A", "T734A", "G791A", "T852A", "T885C", 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"-6174A", "-6177G", "-6178C", "-6179G", "-6180A", "T6181C", "T6187C", "-6200A", "-6201G", "-6202C", "-6203G", "-6204A", "-6205G", "-6206A", "-6207G", "A6275C", "A6277C", "G6311A", "T6328A", "G6336A", "T6395A", "A6456G", "G6481A", "C6482A", "C6487T", "G6490C", "C6499T", "A6500T", "C6511T", "A6514G", "A6520G", "C6523T", "A6532G", "C6545T", "G6547A", "T6551C", "A6553G", "C6563T", "G6577C", "G6578A", "A6595G", "A6617G", "C6618T", "C6632T", "T6634G", "G6716A", "C6752A", "A6764C", "T6766G", "G6767A", "G6771A", "A6773G", "A6779C", "A6788G", "T6793C", "C6797G", "-6833A", "-6835T", "A6841G", "A6854C", "T6856A", "-6964C", "-6966C", "-6967T", "-6985A", "-7001A", "-7005A", "-7009A", "T7011A", "A7012C", "C7016A", "C7020A", "A7040G", "A7042G", "A7044G", "T7045A", "A7089C", "C7127A", "A7158C", "G7181A", "G7182C", "G7190A", "G7197A", "C7313A", "G7322C", "C7324T", "G7440A", "A7525G", "T7627A", "G7628C", "C7678T", "A7701G", "T7702A", "T7708A", "A7764G", "G7765T", "A7782G", "T7796A", "A7800G", "T7801A", "T7825C", "A7880G", "T7894C", "C8051A", "G8136T", "T8169C", "G8216A", "C8232T", "T8243G", "A8264G", "A8266T", "G8267T", "A8269G", "A8275G", "T8279G", "T8290C", "C8293T", "G8368A", "T8411C", "T8414C", "A8429G", "A8432G", "T8440C", "A8441G", "A8458G", "A8459G", "A8465G", "C8471T", "T8480C", "T8483C", "A8486T", "A8489C", "-8490T", "G8499C", "T8504C", "G8528A", "G8537A", "C8543G", "G8558C", "C8607T", "A8608T", "C8666A", "T8708A", "G8717A", "G8732A", "A8739G", "A8746T", "C8751T", "A8780G", "G8786A", "A8815G", "G8861A", "G8868T", "G8882A", "A8885G", "C8904A", "G8905C", "G8974C", "C8975T", "T8976A", "A8980G", "T9017C", "T9018G", "A9026G", "C9078T", "T9097G", "C9108A", "C9181A"], "INT": ["K14R", "Q136T", "T206S"], "RT-p51": ["V21I", "T39A", "I135T", "T173I", "P294T", "I326V", "K366R", "A371V", "R390K", "T403A", "V435I"], "RT-p66": ["V21I", "T39A", "E122K", "I135T", "T173I", "P294T", "I326V", "K366R", "A371V", "R390K", "T403A", "V435I", "Q524K"], "gp120": ["S1N", "D4E", "D34S", "V37K", "N57S", "-105D", "-106I", "T110N", "-115T", "E125-", "I126-", "K141H", "K150R", "S181T", "K201R", "P210T", "T216S", "E241D", "V242I", "T255V", "N261V", "K265T", "I279V", "H280R", "A288T", "Q300K", "N304Q", "V305I", "S306N", "K307E", "E309Q", "K312E", "Q315K", "K319E", "-328N", "N334R", "-379N", "-380T", "-382G", "T387H", "L388I", "I396V", "N397R", "Q412P", "N418I", "L425I", "N435T", "T436-", "G443T", "D446N", "R448K"], "gp41": ["L4M", "V7L", "R46K", "D109H", "N133R", "K154S", "S165T", "N166R", "I193V", "G278V", "E280Q", "V289A", "D305N", "A310V", "W314G", "G322L", "C326G"], "nef": ["S9K", "V33A", "D38A", "K39R", "A50S", "A53P", "H89F", "D98E", "Q104K", "I133V", "Y135F", "E158G", "M173I", "P176S", "R178G", "R188T"], "p1": ["S9N"], "p17": ["L31M", "L46V", "G49S", "I61L", "K69R", "K95R", "D121N", "S125N"], "p2": ["M14L"], "p24": ["S41T", "I91N", "I135V"], "pro": ["K69Q"], "rev": ["E11Q", "T14A", "R17K", "I18V", "A68E", "D91N"], "tat": ["T19A", "G57A", "T58A", "P59S", "Q60G", "S61G", "D64S", "H65N", "N67D"], "vif": ["R19N", "N22K", "H27Y", "Y30H", "V31T", "G37K", "E45D", "R47N", "D61A", "R63E", "R67T", "K77R", "D78E", "H83Q", "Q91L", "S95R", "L109I", "I128R", "R130S", "K151T", "V154I", "T155K", "T157K", "R158K", "R167K", "T170V", "K179R", "G185E", "S186N", "H187Q"], "vpr": ["Y15N", "H28N", "Q77H"], "vpu": ["E5Q", "A8S", "L18A", "Y30V", "E48D", "G68-", "-69V", "-74H", "-75D", "D78N", "N81D"]}, "labels": {"aa": "INT: K14R, Q136T, T206S; RT-p51: V21I, T39A, I135T, T173I, P294T, I326V, K366R, A371V, R390K, T403A, V435I; RT-p66: V21I, T39A, E122K, I135T, T173I, P294T, I326V, K366R, A371V, R390K, T403A, V435I, Q524K; gp120: S1N, D4E, D34S, V37K, N57S, -105D, -106I, T110N, -115T, E125-, I126-, K141H, K150R, S181T, K201R, P210T, T216S, E241D, V242I, T255V, N261V, K265T, I279V, H280R, A288T, Q300K, N304Q, V305I, S306N, K307E, E309Q, K312E, Q315K, K319E, -328N, N334R, -379N, -380T, -382G, T387H, L388I, I396V, N397R, Q412P, N418I, L425I, N435T, T436-, G443T, D446N, R448K; gp41: L4M, V7L, R46K, D109H, N133R, K154S, S165T, N166R, I193V, G278V, E280Q, V289A, D305N, A310V, W314G, G322L, C326G; nef: S9K, V33A, D38A, K39R, A50S, A53P, H89F, D98E, Q104K, I133V, Y135F, E158G, M173I, P176S, R178G, R188T; p1: S9N; p17: L31M, L46V, G49S, I61L, K69R, K95R, D121N, S125N; p2: M14L; p24: S41T, I91N, I135V; pro: K69Q; rev: E11Q, T14A, R17K, I18V, A68E, D91N; tat: T19A, G57A, T58A, P59S, Q60G, S61G, D64S, H65N, N67D; vif: R19N, N22K, H27Y, Y30H, V31T, G37K, E45D, R47N, D61A, R63E, R67T, K77R, D78E, H83Q, Q91L, S95R, L109I, I128R, R130S, K151T, V154I, T155K, T157K, R158K, R167K, T170V, K179R, G185E, S186N, H187Q; vpr: Y15N, H28N, Q77H; vpu: E5Q, A8S, L18A, Y30V, E48D, G68-, -69V, -74H, -75D, D78N, N81D", "clade": "CRF09_cpx"}}, "children": [{"name": "CRF09_cpx_NODE_0000001", "node_attrs": {"div": 0.10056000000000001, "clade_membership": {"value": "CRF09_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A2579T", "C2978A", "A5480C", "A5787C", "C6318A", "G6466T", "A6471C", "G7004T", "T8450C", "T8451C", "T8636A", "T9028C", "G9033-"], "RT-p51": ["S162C", "L295M"], "RT-p66": ["S162C", "L295M"], "gp120": ["-109D", "-118E", "N158R", "E204N", "N206T"], "gp41": ["I235V"], "nef": ["R71K"], "rev": ["H53R"], "tat": ["Q35P"]}, "labels": {"aa": "RT-p51: S162C, L295M; RT-p66: S162C, L295M; gp120: -109D, -118E, N158R, E204N, N206T; gp41: I235V; nef: R71K; rev: H53R; tat: Q35P"}}, "children": [{"name": "AJ866553", "node_attrs": {"div": 0.14816000000000001, "accession": "AJ866553", "clade_membership": {"value": "CRF09_cpx"}, "country": {"value": "CI"}, "date": {"value": 2000.0}, "Strain_name": {"value": "00IC_10092"}, "LANL_subtype": {"value": "CRF09_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T24-", "T95G", "C96A", "G162A", "T163A", "G202T", "C207T", "A263G", "A302T", "A360C", "T362C", "C393A", "G395C", "C435T", "A480G", "C482T", "A509G", "C516T", "A520G", "G541A", "A563G", "A576C", "C577T", "T602A", "G619A", "G665A", "A666-", "G667-", "C668-", "A669-", "A670-", "G671-", "C672A", "A674G", "A676C", "G677A", "A678C", "C679A", "A680G", "C684G", "A685C", "G686A", "A696G", "-714A", "-716T", "-717G", "A743G", "G771T", "A776G", "A791G", "G803A", "A869G", "A945G", "A1079G", "C1175T", "G1192A", "C1247T", "A1274G", "C1295T", "C1342G", "G1419A", "G1424A", "A1442G", "A1529G", "G1553A", "G1562A", "G1586A", "A1588G", "C1654T", "A1661C", "C1692A", "G1694A", "G1697A", "T1723G", "T1724C", "G1725T", "A1728T", "T1729C", "G1732A", "A1736G", "-1741T", "T1752C", "A1777G", "G1784A", "C1825A", "T1828G", "A1846G", "C1853A", "A1918G", "T2080C", "C2149T", "G2155A", "A2156G", "G2215A", "A2241G", "A2275G", "A2311G", "G2431A", "T2443C", "A2498G", "C2511T", "A2512G", "C2528G", "A2529T", "A2593G", "G2602T", "T2613C", "T2689C", "A2699G", "T2740C", "C2749T", "G2755A", "A2866C", "T2890C", "C2942A", "C2952T", "T2968G", "A2969G", "A3079G", "A3168G", "G3169A", "A3181C", "A3200G", "C3201T", "A3205T", "G3208A", "G3221A", "T3256C", "A3259G", "A3264G", "A3268G", "A3292T", "A3293G", "G3302T", "A3364G", "G3454A", "G3463A", "A3484G", "C3504A", "C3542T", "T3566C", "A3578G", "A3629C", "G3630A", "G3631A", "T3644C", "C3668T", "A3684G", "G3685A", "G3694A", "T3742C", "G3756A", "T3977C", "A3985G", "T4039G", "C4042T", "A4084G", "A4130C", "G4131C", "A4150G", "A4174T", "A4175G", "T4396A", "C4426T", "A4474C", "A4495G", "A4528T", "C4534T", "G4549A", "A4555G", "A4558C", "G4583A", "A4697T", "A4850G", "A4861G", "C4886T", "A5036G", "A5037C", "T5043C", "A5050G", "C5052A", "T5084C", "A5110G", "G5128A", "T5152C", "G5153C", "G5176A", "G5185A", "C5221T", "A5223T", "T5228C", "T5293C", "G5312A", "C5333T", "A5335G", "G5359C", "A5370G", "G5371A", "C5398T", "C5406T", "C5412A", "C5438A", "A5444C", "G5565A", "G5567A", "A5581G", "A5587C", "T5599-", "T5602A", "C5614A", "A5621T", "C5641T", "A5656T", "C5678G", "G5695T", "T5696A", "G5729A", "A5742G", "G5775A", "G5794A", "-5809G", "-5810G", "-5812C", "T5813C", "-5814T", "T5832C", "T5841C", "G5842T", "G5845A", "A5856G", "G5861A", "A5866C", "T5871A", "G5872T", "T5929C", "A5959T", "A5983C", "G5995A", "A6023C", "G6024A", "C6026T", "G6029A", "A6030G", "G6079A", "A6086G", "A6103G", "C6109T", "C6110G", "G6121A", "C6145T", "A6167G", "C6169T", "-6175A", "G6177A", "C6181T", "A6182T", "A6183C", "-6189G", "-6195G", "-6196C", "G6198C", "T6199C", "C6202G", "G6203A", "A6206G", "G6207A", "-6208A", "-6209A", "-6210T", "-6211G", "-6212C", "-6213T", "-6214A", "-6225A", "G6227C", "T6246A", "A6251G", "T6252C", "A6265G", "C6278A", "G6284A", "A6286G", "C6293T", "T6315C", "A6330T", "T6337A", "T6340C", "A6344G", "A6346G", "C6347T", "C6364T", "G6368A", "A6371C", "A6406C", "G6463A", "C6477T", "C6490A", "T6511C", "G6514A", "G6532A", "T6562C", "A6573G", "C6577T", "A6605G", "T6618A", "G6631A", "G6635A", "T6637G", "A6649T", "A6654C", "C6660T", "A6669G", "A6682G", "A6683G", "-6689G", "G6718T", "A6723T", "T6745C", "A6751G", "A6765T", "G6774A", "G6788A", "A6801G", "T6815C", "T6835C", "T6838G", "A6840C", "G6841A", "A6848G", "T6849A", "C6850A", "C6854A", "A6884G", "G6906C", "G6936A", "C6951T", "-6962A", "-6963G", "-6968A", "-6969G", "-6970G", "-6977G", "-6978A", "-6979A", "-6980A", "-6981A", "-6982T", "-6983A", "-6984C", "T6994A", "-6995A", "-6996A", "-6997T", "-6998G", "-6999C", "-7000A", "-7002A", "-7003T", "A7010T", "C7014T", "A7020C", "C7078T", "G7102C", "T7107C", "A7111C", "C7114T", "T7130A", "A7149G", "A7161G", "-7162G", "-7164G", "G7168A", "G7198A", "G7199A", "C7201T", "A7238G", "G7289C", "C7322T", "T7324G", "T7337C", "T7403C", "C7411T", "A7420G", "C7463A", "A7470G", "G7477A", "T7489A", "A7504G", "C7544A", "A7621G", "C7628A", "A7629G", "T7642C", "G7677A", "A7691G", "A7706C", "T7748C", "G7782A", "G7790A", "A7791G", "A7796T", "A7801C", "G7807A", "G7880T", "G7965A", "T7968C", "C7969A", "G7997A", "A7998C", "A8006G", "A8023G", "C8026A", "A8029T", "G8079T", "G8087A", "A8119G", "T8121C", "A8130G", "T8145G", "G8159T", "A8162G", "A8163G", "C8169T", "T8176C", "A8193G", "T8209C", "C8213T", "A8216G", "A8228G", "T8232C", "G8245A", "G8255A", "T8265C", "C8277T", "A8288T", "A8297G", "A8364T", "C8369A", "A8370G", "G8373C", "T8374C", "G8375A", "A8400C", "A8409G", "C8412T", "G8441T", "A8455C", "G8459A", "C8494A", "C8504T", "A8525T", "A8531T", "G8554A", "T8594G", "T8597C", "A8656G", "C8687T", "A8701T", "T8745C", "G8784A", "G8804A", "G8815A", "T8835C", "A8837G", "G8846A", "A8873T", "A8874G", "A8886G", "A8893G", "G8894A", "C8905G", "A8909G", "T8914G", "A8917G", "A8918G", "A8922T", "G8929A", "G8980A", "G9007A", "G9008-", "T9012C", "G9015A", "G9016A", "G9027A", "A9108C", "A9134G", "T9180G"], "INT": ["S119P", "N134D", "D207E", "D270N"], "RT-p51": ["I21V", "K49R", "T135V", "T139M", "Q145V", "E169D", "I173T", "I202V", "L283I", "A286V", "D291E", "I292V", "K358R", "T369V", "E370D", "A376T", "K390R", "E399D", "T400A", "A403S"], "RT-p66": ["I21V", "K49R", "T135V", "T139M", "Q145V", "E169D", "I173T", "I202V", "L283I", "A286V", "D291E", "I292V", "K358R", "T369V", "E370D", "A376T", "K390R", "E399D", "T400A", "A403S", "T470N", "H483Y", "S491P", "I495V", "R512Q", "K530R", "S554N"], "gp120": ["N1S", "A3T", "E4D", "L6Y", "S57H", "E59R", "Q86E", "-107K", "N110S", "-112S", "-114S", "-116R", "-117K", "-119M", "-120L", "-121E", "-122Q", "-123M", "F131Y", "M133A", "Q142K", "V144M", "L147F", "V154A", "N157D", "N159K", "N160I", "S162K", "R164S", "A172T", "I173L", "T208I", "E240G", "N251D", "V255D", "V261K", "T265N", "N267T", "T269I", "N272S", "K277E", "Y290F", "Q304L", "E312K", "K315E", "K316R", "N328K", "K329T", "I332E", "R334K", "T344A", "G351A", "G361D", "T366I", "-370S", "-372R", "-375E", "-376N", "-377T", "-381N", "G382A", "-383N", "-384Y", "I386D", "H387Y", "R416S", "I418T", "L426I", "N432S", "-436G", "N437S", "D449N", "K462E", "E479Q"], "gp41": ["L54M", "K56R", "L81I", "H109S", "S125N", "I130V", "I135L", "D163S", "T165S", "R166S", "V193L", "G221E", "I222T", "D232T", "F241L", "L242F", "R259L", "D262N", "I273T", "H276R", "I281S", "G286W", "N287G", "A289V", "K297R", "L304F", "N305D", "I309V", "V310A", "V318I", "V321A", "A325V", "I329F", "I332V", "F340L"], "nef": ["S8C", "I10V", "V11P", "I20L", "T23A", "P24S", "T51N", "Q61H", "E63D", "K105R", "Y120F", "F135L", "V148I", "G158E", "E177D", "M182V", "K184R", "T188S", "L191R", "K192R", "I194L", "R196K"], "p1": ["S8F"], "p17": ["S9R", "R20S", "S49G", "E62G", "R69K", "T81L", "H89Q", "R95K", "S111-", "K112-", "Q113K", "K114T", "T115Q", "Q117A", "N121D", "-127N"], "p24": ["A14S", "I15M", "T72A", "R154K", "A204G", "V230I"], "p6": ["P5T", "F15C", "G16W", "M17S", "R18K", "S24P", "K33R", "P49Q", "L50W"], "p7": ["K41R"], "pro": ["I10M", "L19I"], "rev": ["V18I", "Q24H", "R50N", "I59V", "L60I", "S61C", "R80K", "N91D", "D99E", "G104V", "E105G"], "tat": ["N12K", "A21D", "N23T", "S64N", "I69V", "K71Q", "E86K", "S87Q"], "vif": ["T31I", "K37N", "K92R", "T151P", "K155R", "P156T", "N175S", "R181K", "M189T"], "vpr": ["E17Q", "H40L", "V70I", "H77R", "R85P", "R89E"], "vpu": ["P3T", "Q5V", "I17L", "T24S", "V30Y", "R41K", "D60E", "T61L", "E62A", "E63K", "A65V", "L67M", "-68G", "V69P", "E70P", "M71-", "G72-", "V79F", "D80N"]}, "labels": {"aa": "INT: S119P, N134D, D207E, D270N; RT-p51: I21V, K49R, T135V, T139M, Q145V, E169D, I173T, I202V, L283I, A286V, D291E, I292V, K358R, T369V, E370D, A376T, K390R, E399D, T400A, A403S; RT-p66: I21V, K49R, T135V, T139M, Q145V, E169D, I173T, I202V, L283I, A286V, D291E, I292V, K358R, T369V, E370D, A376T, K390R, E399D, T400A, A403S, T470N, H483Y, S491P, I495V, R512Q, K530R, S554N; gp120: N1S, A3T, E4D, L6Y, S57H, E59R, Q86E, -107K, N110S, -112S, -114S, -116R, -117K, -119M, -120L, -121E, -122Q, -123M, F131Y, M133A, Q142K, V144M, L147F, V154A, N157D, N159K, N160I, S162K, R164S, A172T, I173L, T208I, E240G, N251D, V255D, V261K, T265N, N267T, T269I, N272S, K277E, Y290F, Q304L, E312K, K315E, K316R, N328K, K329T, I332E, R334K, T344A, G351A, G361D, T366I, -370S, -372R, -375E, -376N, -377T, -381N, G382A, -383N, -384Y, I386D, H387Y, R416S, I418T, L426I, N432S, -436G, N437S, D449N, K462E, E479Q; gp41: L54M, K56R, L81I, H109S, S125N, I130V, I135L, D163S, T165S, R166S, V193L, G221E, I222T, D232T, F241L, L242F, R259L, D262N, I273T, H276R, I281S, G286W, N287G, A289V, K297R, L304F, N305D, I309V, V310A, V318I, V321A, A325V, I329F, I332V, F340L; nef: S8C, I10V, V11P, I20L, T23A, P24S, T51N, Q61H, E63D, K105R, Y120F, F135L, V148I, G158E, E177D, M182V, K184R, T188S, L191R, K192R, I194L, R196K; p1: S8F; p17: S9R, R20S, S49G, E62G, R69K, T81L, H89Q, R95K, S111-, K112-, Q113K, K114T, T115Q, Q117A, N121D, -127N; p24: A14S, I15M, T72A, R154K, A204G, V230I; p6: P5T, F15C, G16W, M17S, R18K, S24P, K33R, P49Q, L50W; p7: K41R; pro: I10M, L19I; rev: V18I, Q24H, R50N, I59V, L60I, S61C, R80K, N91D, D99E, G104V, E105G; tat: N12K, A21D, N23T, S64N, I69V, K71Q, E86K, S87Q; vif: T31I, K37N, K92R, T151P, K155R, P156T, N175S, R181K, M189T; vpr: E17Q, H40L, V70I, H77R, R85P, R89E; vpu: P3T, Q5V, I17L, T24S, V30Y, R41K, D60E, T61L, E62A, E63K, A65V, L67M, -68G, V69P, E70P, M71-, G72-, V79F, D80N"}}}, {"name": "AY093604", "node_attrs": {"div": 0.12472000000000001, "accession": "AY093604", "clade_membership": {"value": "CRF09_cpx"}, "country": {"value": "SN"}, "date": {"value": 1995.0}, "Strain_name": {"value": "95SN7808"}, "LANL_subtype": {"value": "CRF09_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "G378A", "A412G", "C483T", "G495A", "C510A", "A543G", "A566G", "C583T", "C587T", "A592G", "T593G", "A605G", "A645T", "A674G", "G677C", "A705-", "G706-", "C707-", "A708-", "A709-", "C710-", "A711-", "G712-", "C713-", "A715-", "T718-", "C719-", "T728C", "C845T", "C872T", "C885T", "T890C", "A945G", "C946T", "C950T", "G1090A", "G1134A", "C1211T", "G1217A", "T1271C", "A1361C", "A1445G", "C1536A", "C1598T", "T1723A", "G1739-", "A1740-", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "A1927G", "A1966G", "G1972A", "T1986C", "G2173A", "C2299T", "T2302C", "A2311G", "T2420C", "G2431A", "T2499C", "G2509A", "G2602A", "C2605T", "T2607A", "A2625G", "A2845C", "A2846T", "G2847A", "A2872G", "G2909A", "A2929G", "G2932A", "G3010A", "A3058G", "A3107T", "G3142C", "A3151G", "G3173A", "A3193G", "A3238G", "A3293G", "C3294T", "A3398G", "T3399C", "C3449A", "T3526A", "C3550T", "A3665G", "A3675G", "A3866G", "A3964G", "T3994C", "A4076C", "A4078G", "C4141T", "A4183C", "G4264A", "A4455T", "C4501A", "G4539A", "T4543A", "G4573A", "T4585C", "C4674T", "T4678C", "A4693G", "C4715T", "G4818C", "A4888G", "A4993G", "A5033G", "A5051C", "G5087A", "G5128A", "A5167G", "T5171C", "G5185A", "C5221T", "G5382T", "A5448C", "C5484T", "G5565A", "C5578A", "G5594A", "T5600A", "A5603T", "G5620C", "A5668T", "A5677G", "T5686C", "G5720A", "G5729A", "C5769T", "G5775A", "A5781C", "C5792A", "A5793G", "C5797T", "T5799G", "T5801C", "G5802C", "G5803A", "G5805A", "A5806C", "G5808T", "G5811-", "-5812G", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5824T", "T5956C", "G6028A", "C6052T", "A6066G", "A6088G", "C6163T", "T6166C", "T6171C", "A6174C", "-6175G", "C6178T", "A6188C", "-6189C", "-6195C", "-6196G", "A6200G", "-6208T", "G6224-", "A6226-", "C6277A", "T6287C", "T6298C", "T6307A", "T6322G", "T6325A", "A6327G", "A6332G", "T6341G", "G6345A", "A6346G", "C6347T", "A6484C", "G6494A", "G6520A", "C6577A", "C6607T", "A6636T", "T6637C", "A6648C", "T6667C", "-6689A", "G6732A", "T6733C", "A6737G", "G6743A", "C6758T", "A6759C", "G6766A", "G6774A", "A6785G", "T6787G", "G6797A", "A6810G", "A6812C", "A6818G", "T6875A", "T6895C", "A6926G", "T6952G", "-6956A", "-6957A", "-6958A", "-6962G", "-6963G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975T", "-6976A", "-6977C", "-6978A", "-6979G", "-6980G", "-6981G", "-6982G", "-6983T", "-6984C", "A6989G", "A6990G", "-6995G", "-6996G", "-6997A", "-6998T", "-6999C", "-7000A", "-7002A", "-7003T", "A7010C", "C7012G", "C7014-", "T7015-", "A7016-", "A7021G", "G7026A", "A7100G", "A7148G", "T7150C", "A7155C", "C7156A", "A7157G", "C7158G", "-7162T", "-7164A", "G7168A", "C7182T", "A7241C", "A7268C", "G7269C", "G7275A", "C7463T", "A7590C", "A7676C", "G7677A", "A7732G", "A8006G", "T8008G", "G8019A", "C8048T", "A8204G", "G8242A", "A8288G", "A8323C", "A8368G", "C8369T", "G8404A", "C8411T", "T8456C", "G8487C", "G8554A", "G8561A", "T8607C", "T8608A", "A8656G", "G8739A", "T8740C", "G8753A", "G8846A", "A8858C", "A8879G", "A8934C", "C8992A", "A9005G", "G9007A", "A9009G", "G9011C", "T9012G", "T9014A", "G9015A", "G9016C", "C9017A", "G9027A", "T9029C"], "INT": ["I31V", "I101L", "Y227F", "S255N", "D256E"], "RT-p51": ["F171Y", "E177G", "E250D", "S251Y", "A272T", "T338S", "A360T", "T400V", "I435A"], "RT-p66": ["F171Y", "E177G", "E250D", "S251Y", "A272T", "T338S", "A360T", "T400V", "I435A", "L452I", "K524E", "E527G"], "gp120": ["N71S", "E78K", "D105N", "I106T", "-107T", "N108S", "-112P", "-114V", "-116S", "-117G", "-119S", "-120E", "-121M", "H141Q", "Y145H", "I156M", "N157E", "N160D", "Y163D", "R164K", "K212N", "V214I", "D241E", "V279I", "G293D", "D294I", "I295V", "D297N", "H302S", "N311E", "E319G", "K320Q", "R322G", "R334Q", "L341I", "N358D", "-368K", "-370G", "-372N", "-373I", "-374Q", "-376G", "-377S", "N379G", "-383S", "-384N", "T385Y", "I386T", "H387Q", "P389Q", "R391K", "R416G", "N432D", "N434T", "T435G", "-436D", "T443I", "I463L", "R472P", "R474K"], "gp41": ["N96T", "S125H", "N160S", "S239N", "I301V", "I329V"], "nef": ["K9S", "R21K", "A38D", "A49P", "F89H", "K105R", "V133T", "G178R", "K198Q"], "p17": ["A15T", "K26R", "L50F", "A54T", "Q59K", "T70A", "A83V", "Y86W", "I104L", "K114N", "S124-", "N125-", "S126-", "V128-"], "p24": ["T72V", "S120N", "V135I"], "p6": ["F15Y"], "p7": ["L24I"], "pro": ["L63P"], "rev": ["S54A", "P67L"], "tat": ["E2D", "K24N", "P68T"], "vif": ["H30Y", "K36R", "E78Q", "D101G", "Q136R", "K155N", "R181K"], "vpr": ["A93S"], "vpu": ["I21F", "T24A", "F27L", "R38K", "R41K", "E58D", "E66K", "-73S"]}, "labels": {"aa": "INT: I31V, I101L, Y227F, S255N, D256E; RT-p51: F171Y, E177G, E250D, S251Y, A272T, T338S, A360T, T400V, I435A; RT-p66: F171Y, E177G, E250D, S251Y, A272T, T338S, A360T, T400V, I435A, L452I, K524E, E527G; gp120: N71S, E78K, D105N, I106T, -107T, N108S, -112P, -114V, -116S, -117G, -119S, -120E, -121M, H141Q, Y145H, I156M, N157E, N160D, Y163D, R164K, K212N, V214I, D241E, V279I, G293D, D294I, I295V, D297N, H302S, N311E, E319G, K320Q, R322G, R334Q, L341I, N358D, -368K, -370G, -372N, -373I, -374Q, -376G, -377S, N379G, -383S, -384N, T385Y, I386T, H387Q, P389Q, R391K, R416G, N432D, N434T, T435G, -436D, T443I, I463L, R472P, R474K; gp41: N96T, S125H, N160S, S239N, I301V, I329V; nef: K9S, R21K, A38D, A49P, F89H, K105R, V133T, G178R, K198Q; p17: A15T, K26R, L50F, A54T, Q59K, T70A, A83V, Y86W, I104L, K114N, S124-, N125-, S126-, V128-; p24: T72V, S120N, V135I; p6: F15Y; p7: L24I; pro: L63P; rev: S54A, P67L; tat: E2D, K24N, P68T; vif: H30Y, K36R, E78Q, D101G, Q136R, K155N, R181K; vpr: A93S; vpu: I21F, T24A, F27L, R38K, R41K, E58D, E66K, -73S"}}}]}, {"name": "CRF09_cpx_NODE_0000002", "node_attrs": {"div": 0.10597000000000001, "clade_membership": {"value": "CRF09_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-714A", "-717G", "G785A", "G1078C", "A1313G", "C1767A", "A1770-", "G1772-", "C1775G", "A1776G", "A2389G", "A3448G", "G3473A", "G4583C", "G4737A", "A5248T", "C5303T", "G5482A", "T5483A", "C5614T", "G5907A", "A6023G", "T6091C", "-6175C", "G6179A", "-6189A", "A6204G", "-6221G", "-6223A", "C6263T", "T6322C", "G6339A", "G6583A", "G6940A", "A7151G", "A7258G", "A7573G", "A8455G", "C8867T", "G9018C"], "INT": ["D270H"], "RT-p66": ["D460N"], "gp120": ["R18K", "S57G", "N102D", "N111-", "T115S", "S162E", "M243I", "E307G"], "nef": ["I168M"], "p17": ["-127K"], "p24": ["G116A"], "p6": ["Q30K", "K31-", "D32G", "Q35P"], "tat": ["V36K"], "vif": ["V51I"], "vpu": ["P3S"]}, "labels": {"aa": "INT: D270H; RT-p66: D460N; gp120: R18K, S57G, N102D, N111-, T115S, S162E, M243I, E307G; nef: I168M; p17: -127K; p24: G116A; p6: Q30K, K31-, D32G, Q35P; tat: V36K; vif: V51I; vpu: P3S"}}, "children": [{"name": "AY093605", "node_attrs": {"div": 0.13382, "accession": "AY093605", "clade_membership": {"value": "CRF09_cpx"}, "country": {"value": "GH"}, "date": {"value": 1996.0}, "Strain_name": {"value": "96GH2911"}, "LANL_subtype": {"value": "CRF09_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T357C", "G400A", "A431G", "C456T", "A474G", "C476T", "T485C", "G495A", "A499G", "C516T", "A530G", "G534T", "C539T", "G607A", "T614G", "T635G", "A660G", "A661G", "G690A", "G706A", "-716G", "A743G", "A758G", "A776C", "G803A", "C1062G", "A1089G", "C1091T", "C1178T", "G1232A", "G1283A", "C1490T", "A1703G", "-1741C", "-1770G", "-1772C", "A1774G", "G1778A", "G1779C", "A1781G", "A1783C", "G1784C", "G1852A", "C1853T", "A1894G", "G1981A", "A1993G", "T2011G", "G2155A", "A2170C", "A2305G", "G2332A", "C2335T", "A2371G", "T2393C", "A2470G", "A2498G", "A2515G", "T2521C", "G2702A", "C2885T", "T2890C", "A2955G", "A2965G", "A3162G", "A3168G", "A3181G", "A3196G", "G3221A", "G3340A", "A3460G", "A3476C", "G3491A", "T3530C", "A3538C", "G3553A", "C3712T", "G3766A", "C3799T", "G3808A", "C3823T", "A3866G", "C4021T", "G4060A", "A4111G", "A4120G", "C4132T", "A4178G", "G4340A", "G4539A", "T4678C", "A4696G", "C4721T", "A4760G", "A4808G", "G4811A", "G4818A", "A4871G", "G4887A", "A4888G", "T4959A", "C4965G", "A5051C", "A5056G", "G5060A", "A5167G", "C5215T", "A5373G", "G5375C", "G5376A", "C5384T", "G5418A", "A5462G", "G5463A", "C5472T", "T5478C", "A5482C", "T5490C", "G5538A", "G5554T", "T5602A", "G5620C", "C5641A", "T5672C", "A5703G", "G5784A", "A5787T", "C5792A", "A5793G", "C5797T", "T5799G", "T5801C", "G5802A", "G5803A", "G5805A", "A5806C", "G5808T", "G5811-", "-5812G", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5833T", "T5834C", "T5911G", "C5924T", "A5945C", "C5958A", "C5974T", "C6109T", "C6116T", "A6158G", "A6164C", "C6165A", "A6168G", "C6169A", "A6170G", "G6177A", "A6180G", "C6184A", "A6185C", "A6186C", "A6192C", "-6195C", "-6196G", "A6200G", "G6201A", "-6208T", "-6222A", "-6225T", "G6227A", "A6228G", "A6233C", "G6253A", "C6305T", "T6306C", "C6317T", "G6323A", "A6326G", "A6327C", "A6330G", "A6338G", "T6340G", "A6464G", "C6483T", "C6490A", "A6525G", "C6612T", "A6636C", "G6640T", "A6648C", "A6649G", "A6653G", "A6659G", "C6660T", "C6665A", "A6668G", "A6669G", "A6684C", "-6689G", "A6751G", "C6756T", "C6779A", "C6792T", "A6798G", "G6819A", "A6821G", "A6822G", "A6855G", "T6875G", "A6926G", "G6948A", "-6962G", "-6963G", "C6964T", "-6968T", "-6969G", "-6970G", "-6983G", "-6984A", "C6993A", "-6995A", "-6996A", "-6997T", "-6998A", "-6999G", "-7000C", "-7002T", "-7003A", "C7006A", "C7008A", "A7009T", "A7010T", "A7021C", "T7095A", "T7107G", "A7149G", "A7154G", "C7158A", "-7162G", "-7164C", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "A7234G", "G7423A", "A7439C", "A7440G", "G7468A", "T7642G", "G7690A", "A7691C", "A7693G", "A7702G", "C7723T", "T7765C", "G7800A", "A7801T", "A7818G", "A7820T", "T7932C", "G7947A", "A7998T", "C8005A", "A8029C", "A8032G", "G8098A", "T8239C", "C8296T", "A8323T", "C8406A", "C8412T", "G8418C", "A8469C", "C8500A", "A8519G", "A8525G", "A8531T", "A8537C", "T8546C", "T8595G", "T8597C", "C8606T", "T8829A", "A8859G", "A8861G", "G8864T", "G8865-", "A8866-", "T8868C", "C8869A", "A8870G", "A8873G", "A8874-", "A8882G", "A8893G", "C8992A", "T8993A", "T9179C"], "INT": ["I31V", "I135V", "G189R", "S255N"], "RT-p51": ["T135V", "E203K", "K287R", "K356R", "K358R", "A376T"], "RT-p66": ["T135V", "E203K", "K287R", "K356R", "K358R", "A376T", "V466I"], "gp120": ["D19E", "K31Q", "T35K", "E78K", "T104H", "D105R", "I106V", "-107N", "-109S", "N110K", "-111P", "-112N", "N113T", "-114T", "-116D", "-117G", "-118R", "-119M", "-120Q", "K127-", "M133I", "L151S", "Q155S", "N158A", "N159S", "T210I", "K224R", "A253V", "V261A", "E262D", "N267D", "T269V", "P271T", "N272G", "K277T", "A301V", "Q309K", "T313I", "K315G", "R322K", "K323G", "L341V", "N358D", "S365N", "-370G", "-372W", "-375E", "-376N", "-377N", "T380S", "-381I", "G382E", "-383N", "-384Y", "I388-", "P389-", "V414E", "I418R", "N432S", "N433D", "N434D", "T435N", "-436E", "N437T", "E438-", "T439-"], "gp41": ["K46R", "D113E", "I130L", "N160S", "R166N", "K172R", "I173L", "I210T", "G215E", "D232V", "L242F"], "nef": ["P24S", "A26S", "A38G", "I43L", "P53H", "E63D", "E65D", "F85V", "E98D", "C163S", "I173V", "E174D", "D175-", "G178-", "K184R"], "p17": ["R22K", "N47D", "A54T", "E55G", "A67S", "R91K", "D93E", "N109G", "A119T", "S124N"], "p24": ["L111V", "S120G", "W184*"], "p6": ["I21T", "-31D", "K33E"], "rev": ["S8N", "K17R", "R50S", "H53N", "S61R", "T62A", "D84N"], "tat": ["P3L", "K29R", "K36H", "G60C", "S75P", "D80N"], "vif": ["K37R", "E78K", "D101S", "L125I", "H127D", "K155N", "K157R"], "vpr": ["E48D"], "vpu": ["L12I", "V22A", "E66K", "-73P", "L76S"]}, "labels": {"aa": "INT: I31V, I135V, G189R, S255N; RT-p51: T135V, E203K, K287R, K356R, K358R, A376T; RT-p66: T135V, E203K, K287R, K356R, K358R, A376T, V466I; gp120: D19E, K31Q, T35K, E78K, T104H, D105R, I106V, -107N, -109S, N110K, -111P, -112N, N113T, -114T, -116D, -117G, -118R, -119M, -120Q, K127-, M133I, L151S, Q155S, N158A, N159S, T210I, K224R, A253V, V261A, E262D, N267D, T269V, P271T, N272G, K277T, A301V, Q309K, T313I, K315G, R322K, K323G, L341V, N358D, S365N, -370G, -372W, -375E, -376N, -377N, T380S, -381I, G382E, -383N, -384Y, I388-, P389-, V414E, I418R, N432S, N433D, N434D, T435N, -436E, N437T, E438-, T439-; gp41: K46R, D113E, I130L, N160S, R166N, K172R, I173L, I210T, G215E, D232V, L242F; nef: P24S, A26S, A38G, I43L, P53H, E63D, E65D, F85V, E98D, C163S, I173V, E174D, D175-, G178-, K184R; p17: R22K, N47D, A54T, E55G, A67S, R91K, D93E, N109G, A119T, S124N; p24: L111V, S120G, W184*; p6: I21T, -31D, K33E; rev: S8N, K17R, R50S, H53N, S61R, T62A, D84N; tat: P3L, K29R, K36H, G60C, S75P, D80N; vif: K37R, E78K, D101S, L125I, H127D, K155N, K157R; vpr: E48D; vpu: L12I, V22A, E66K, -73P, L76S"}}}, {"name": "CRF09_cpx_NODE_0000003", "node_attrs": {"div": 0.10843000000000001, "clade_membership": {"value": "CRF09_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A417C", "C1060A", "A1771-", "T1986C", "T2499C", "C2839A", "A2925G", "C3542T", "T3644A", "A5448T", "T5568C", "T5600A", "A5603T", "A5788T", "C5789T", "A6174G", "C6178A", "-6209A", "-6215A", "-6216C", "-6218G", "-6219A", "T6287C", "T6334A", "G6463A", "G6935A", "G7026A", "G7101A", "G7160A", "C7411T", "G7701A", "G8170A", "G8180A", "G8255A", "A8453G", "A8573G", "A8584T"], "RT-p51": ["D248E", "K277R"], "RT-p66": ["D248E", "K277R", "H483Y", "L517I"], "gp120": ["-125E", "Y145H", "N161T", "E204K", "K212N", "S278G", "R391K"], "gp41": ["H109Q", "G293S", "V318I", "F340L"], "nef": ["T23S", "Y81F"], "p17": ["K28Q"], "p24": ["T110N"], "pro": ["L63P"], "rev": ["V18A", "A108T", "G111E"], "vif": ["A61D"]}, "labels": {"aa": "RT-p51: D248E, K277R; RT-p66: D248E, K277R, H483Y, L517I; gp120: -125E, Y145H, N161T, E204K, K212N, S278G, R391K; gp41: H109Q, G293S, V318I, F340L; nef: T23S, Y81F; p17: K28Q; p24: T110N; pro: L63P; rev: V18A, A108T, G111E; vif: A61D"}}, "children": [{"name": "AY093607", "node_attrs": {"div": 0.14816000000000001, "accession": "AY093607", "clade_membership": {"value": "CRF09_cpx"}, "country": {"value": "US"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99DE4057"}, "LANL_subtype": {"value": "CRF09_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "T362C", "G452A", "G458A", "A480G", "A500G", "G541A", "C590T", "G665A", "C684A", "G686C", "G687A", "C713A", "-716T", "T746C", "A776G", "C823G", "G829A", "C885T", "C897T", "G906A", "G920A", "C950T", "G956A", "G998A", "C1094T", "T1229C", "A1250G", "T1253C", "A1259G", "C1334T", "C1406T", "T1427A", "A1475G", "C1490T", "A1538G", "A1607G", "A1700C", "C1706T", "A1709G", "G1720A", "G1732A", "G1739-", "A1740-", "C1744T", "C1745A", "-1746G", "-1747C", "-1748C", "G1757A", "G1760A", "A1767-", "A1768-", "G1769-", "G1773-", "A1774-", "G1775-", "G1776-", "A1777-", "G1778-", "G1779-", "T1790C", "G1867A", "A1907C", "G1972A", "G1981A", "A1993G", "T2066C", "T2206C", "T2245A", "T2257C", "T2420C", "G2422A", "T2425C", "G2548A", "A2579T", "T2607A", "T2613A", "A2617G", "C2638T", "A2641G", "G2665A", "T2672C", "C2720T", "T2735C", "A2743G", "C2828G", "A2884G", "G2909C", "G2921A", "G2926A", "T2953C", "T2968G", "G2989A", "G3019A", "G3037A", "T3059G", "C3100T", "A3200G", "G3221A", "A3224T", "C3225T", "A3226G", "C3232T", "A3251G", "T3256C", "A3268G", "A3304G", "G3307A", "C3391T", "C3394T", "G3409A", "G3463T", "T3493G", "A3508G", "A3538T", "T3566C", "C3589T", "A3637G", "G3643A", "G3664A", "C3763T", "G3766A", "T3853C", "G3891A", "T3909A", "A3934G", "T3962C", "A3989G", "G3997A", "G4145A", "T4152C", "T4321A", "A4372G", "A4402G", "T4543C", "A4621T", "A4638G", "A4661G", "T4678A", "T4679A", "A4687G", "G4689A", "A4693G", "A4751G", "G4765A", "A4766G", "A4806G", "G4811A", "T4832A", "G4856A", "G4878A", "A4895G", "A5051G", "A5059G", "A5061G", "G5185A", "A5186G", "G5192A", "T5197C", "T5228C", "T5248G", "C5251A", "G5276A", "A5277T", "G5312A", "G5382C", "T5391C", "C5406A", "T5424C", "A5434G", "G5437C", "T5451C", "T5478C", "C5484G", "A5495C", "C5496A", "G5558A", "G5561A", "A5564C", "C5579A", "A5628T", "A5668G", "T5686G", "T5687C", "A5694G", "G5695T", "G5718A", "A5719G", "A5721G", "G5730A", "T5751A", "G5791T", "G5794A", "T5799-", "G5800-", "T5801-", "G5802-", "G5803-", "A5804-", "G5805-", "A5806-", "T5807-", "G5808-", "-5812G", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "G5842A", "G5845A", "A5856G", "C5878A", "T5911G", "G5917A", "T5929C", "G5948T", "T5954G", "C5955T", "T5968C", "G6024T", "A6066G", "G6076A", "A6086C", "A6132T", "T6134C", "C6145T", "T6160G", "A6164T", "C6181A", "A6183C", "C6184T", "A6191-", "A6192-", "C6193-", "A6194-", "A6197-", "G6198-", "T6199-", "G6207C", "-6208A", "-6210T", "-6211A", "-6212G", "-6213A", "-6214A", "-6217A", "-6220A", "G6221A", "-6222T", "G6224C", "-6225A", "G6232A", "A6274G", "T6290G", "G6323A", "A6326G", "A6328C", "A6332G", "A6336C", "T6337A", "T6340C", "A6367G", "C6375A", "A6407G", "C6446T", "G6458A", "G6514A", "G6520A", "G6575A", "A6605G", "C6607T", "G6611A", "G6631A", "A6636T", "A6648T", "A6649G", "A6684C", "A6686G", "-6689G", "A6752C", "T6760G", "C6764A", "G6766C", "C6779A", "A6810G", "A6812G", "A6848G", "C6854A", "A6855G", "A6881G", "G6894C", "T6898C", "A6913G", "-6956G", "-6957A", "-6958T", "-6962A", "-6963A", "-6968A", "-6969A", "-6970A", "-6971A", "-6972G", "-6973T", "-6974G", "-6975C", "-6976A", "-6977C", "-6978A", "-6979G", "-6980G", "-6981G", "-6982G", "-6983C", "-6984C", "A6989G", "A6990G", "T6994G", "A7001-", "A7005C", "C7008A", "A7009T", "A7011T", "T7015A", "A7020C", "C7024T", "A7032G", "G7033A", "G7102T", "C7134T", "T7144G", "T7153G", "A7155G", "A7157G", "A7161C", "-7162A", "-7164A", "C7182T", "A7190G", "G7199A", "C7201T", "G7276A", "G7289C", "T7324G", "C7393T", "C7436T", "T7516A", "G7517A", "G7519A", "A7553C", "T7630A", "A7702C", "A7711G", "G7712A", "G7735A", "A7796T", "A7818G", "T7852A", "G7880A", "T7968C", "G7977A", "C8065T", "C8095A", "A8130T", "T8164C", "C8169T", "T8215A", "G8254A", "T8257C", "T8265C", "T8293C", "A8297G", "G8365A", "C8369G", "A8372G", "T8374C", "T8384A", "G8398A", "G8407A", "A8409C", "C8411A", "C8412G", "C8414A", "G8432A", "G8441C", "G8454A", "A8461G", "C8477T", "T8490C", "C8491A", "T8492G", "C8494A", "G8516A", "A8528G", "A8531G", "A8537G", "G8543A", "G8554A", "T8597C", "C8688A"], "INT": ["S39N", "L45Q", "I72V", "A124T", "V126A", "D288G"], "RT-p51": ["S162C", "F171Y", "I173K", "F214L", "Q245E", "A272P", "V276I", "D291E", "S322A", "T369A", "A376T", "T377L", "T386A"], "RT-p66": ["S162C", "F171Y", "I173K", "F214L", "Q245E", "A272P", "V276I", "D291E", "S322A", "T369A", "A376T", "T377L", "T386A", "S491P"], "gp120": ["N1S", "D19E", "A32S", "S34V", "G57V", "N71S", "E78Q", "K93M", "D102K", "D105E", "-107Q", "N110-", "N113-", "S115-", "-126I", "S146A", "Q155P", "N158D", "N160E", "E162N", "T174K", "I185V", "D202N", "D241N", "N251D", "A253T", "T265M", "K277T", "K300Q", "H302Q", "Q304N", "Q309K", "K315E", "E319G", "K320E", "I332V", "I343V", "S347T", "G361S", "-368D", "-370N", "-372K", "-373S", "-374A", "-375Q", "-376G", "-377P", "N379G", "-381A", "G382N", "T385-", "H387T", "K393R", "R416N", "T427I", "N433E", "N434S", "T435A", "-436T", "T443I", "N446D", "D449N", "E479Q"], "gp41": ["V72I", "I84L", "R133N", "E137K", "N160S", "T165S", "K172R", "V193I", "I222T", "G225E", "H276L", "A289V", "V321A", "I332V"], "nef": ["S8N", "I10M", "V11A", "R19K", "R22Q", "A38S", "H40R", "S50Q", "T51N", "R71K", "E98D", "H116N"], "p17": ["V7I", "S49G", "R69K", "Q117N", "A118T", "S126R", "K127N"], "p24": ["I15M", "A31G", "S33N", "V59I"], "p6": ["S14N", "R18K", "T22A", "K30-", "G32-", "K33-", "E34-"], "pro": ["N37H"], "rev": ["A15T", "V16I", "K17R", "L22I", "L73F", "L83I", "S106P"], "tat": ["E2D", "T20A", "A21P", "K24N", "N40T", "G61D", "S62N", "K63T", "P68H", "S87P"], "vif": ["Q12L", "I18V", "T31K", "K34R", "A35T", "K36R", "G60E", "D61E", "E63A", "T74A", "V98I", "K158R", "T159A"], "vpr": ["N28D", "A30T", "E58I", "V70I", "A93P", "S96P"], "vpu": ["Q5E", "I21V", "F27A", "V30F", "R38G", "D48E", "D60E", "T61L", "E62S", "E63K", "A65V", "L67M", "-68G", "V69P", "E70-", "M71-", "G72-", "V79I", "D80N"]}, "labels": {"aa": "INT: S39N, L45Q, I72V, A124T, V126A, D288G; RT-p51: S162C, F171Y, I173K, F214L, Q245E, A272P, V276I, D291E, S322A, T369A, A376T, T377L, T386A; RT-p66: S162C, F171Y, I173K, F214L, Q245E, A272P, V276I, D291E, S322A, T369A, A376T, T377L, T386A, S491P; gp120: N1S, D19E, A32S, S34V, G57V, N71S, E78Q, K93M, D102K, D105E, -107Q, N110-, N113-, S115-, -126I, S146A, Q155P, N158D, N160E, E162N, T174K, I185V, D202N, D241N, N251D, A253T, T265M, K277T, K300Q, H302Q, Q304N, Q309K, K315E, E319G, K320E, I332V, I343V, S347T, G361S, -368D, -370N, -372K, -373S, -374A, -375Q, -376G, -377P, N379G, -381A, G382N, T385-, H387T, K393R, R416N, T427I, N433E, N434S, T435A, -436T, T443I, N446D, D449N, E479Q; gp41: V72I, I84L, R133N, E137K, N160S, T165S, K172R, V193I, I222T, G225E, H276L, A289V, V321A, I332V; nef: S8N, I10M, V11A, R19K, R22Q, A38S, H40R, S50Q, T51N, R71K, E98D, H116N; p17: V7I, S49G, R69K, Q117N, A118T, S126R, K127N; p24: I15M, A31G, S33N, V59I; p6: S14N, R18K, T22A, K30-, G32-, K33-, E34-; pro: N37H; rev: A15T, V16I, K17R, L22I, L73F, L83I, S106P; tat: E2D, T20A, A21P, K24N, N40T, G61D, S62N, K63T, P68H, S87P; vif: Q12L, I18V, T31K, K34R, A35T, K36R, G60E, D61E, E63A, T74A, V98I, K158R, T159A; vpr: N28D, A30T, E58I, V70I, A93P, S96P; vpu: Q5E, I21V, F27A, V30F, R38G, D48E, D60E, T61L, E62S, E63K, A65V, L67M, -68G, V69P, E70-, M71-, G72-, V79I, D80N"}}}, {"name": "AY093603", "node_attrs": {"div": 0.13825, "accession": "AY093603", "clade_membership": {"value": "CRF09_cpx"}, "country": {"value": "SN"}, "date": {"value": 1995.0}, "Strain_name": {"value": "95SN1795"}, "LANL_subtype": {"value": "CRF09_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T377C", "G378A", "C379A", "G424A", "C516A", "A527G", "T560C", "A566G", "G608A", "T662G", "A675G", "G683A", "-716G", "C719T", "C964T", "G978A", "T979C", "T1063C", "A1089G", "C1103T", "G1139A", "C1187T", "A1205G", "A1263T", "T1271G", "A1292C", "G1339A", "A1346G", "G1355A", "G1404A", "A1442G", "T1444C", "G1476A", "G1493A", "C1523T", "A1526G", "A1643G", "A1656C", "A1661G", "T1724G", "-1741T", "C1756T", "A1777G", "A1780G", "C1785T", "A2007G", "C2199A", "G2210A", "A2241G", "A2243G", "G2248A", "A2254G", "C2335A", "A2470G", "A2592G", "T2668A", "A2697C", "T2824A", "A2881C", "A2975C", "A3073G", "G3094A", "T3118C", "G3127A", "A3196G", "G3217A", "G3218A", "G3220A", "C3223T", "A3241C", "A3280G", "G3307T", "G3316A", "C3321G", "C3322T", "C3449T", "C3475T", "G3553A", "C3610T", "A3637C", "T3652C", "A3745G", "C3787T", "T3829C", "G3886A", "A3923G", "C4042T", "G4156A", "A4175G", "A4176G", "A4213G", "A4243G", "A4297G", "G4353A", "G4366A", "A4376G", "C4426T", "T4537A", "A4555G", "G4573A", "C4576A", "T4691A", "A4694G", "C4754T", "C4761T", "C4768A", "G4864A", "C4914T", "T4932A", "A5004C", "A5005C", "A5057G", "A5134G", "G5176A", "G5199A", "G5226A", "C5227G", "T5239C", "A5247C", "A5272G", "G5276C", "C5333T", "C5406T", "A5426G", "A5433C", "A5447G", "G5463A", "C5484A", "A5499G", "G5565A", "C5579T", "G5620T", "A5622C", "C5631T", "C5641T", "A5711G", "A5790G", "-5809G", "-5810G", "T5813-", "A5846C", "A5866C", "C5884A", "T5932C", "T5980C", "A6030G", "A6086G", "C6116T", "A6120G", "A6158G", "C6165A", "A6167G", "A6170G", "A6186C", "C6190T", "-6195G", "-6196C", "T6199C", "G6201T", "C6202A", "G6203T", "G6204T", "G6205T", "-6208C", "-6210A", "-6211C", "-6212A", "-6213T", "-6214T", "-6217G", "-6220G", "-6222A", "-6225G", "A6233G", "A6234C", "C6275A", "C6277A", "C6317A", "T6321C", "C6322A", "T6325A", "A6328T", "A6333G", "A6336G", "A6338C", "C6369T", "G6457A", "C6577T", "C6591T", "A6606G", "G6638A", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "A6695G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6716G", "G6732A", "A6734G", "T6735A", "A6736C", "T6745C", "C6758T", "A6759T", "C6764G", "A6767G", "G6797A", "C6807A", "T6808G", "G6819A", "A6821G", "T6835A", "T6849G", "T6932A", "G6936A", "A6947T", "C6949G", "A6950-", "C6951-", "T6952-", "T6953-", "G6954-", "G6955-", "A6959-", "A6960-", "T6961-", "C6964-", "A6965-", "C6966-", "T6967-", "A6985-", "-6995A", "-6996A", "-6997G", "-6998G", "-6999A", "-7000A", "-7002A", "-7003T", "A7005G", "C7012G", "C7014A", "C7084T", "G7094A", "A7100G", "A7106G", "A7127G", "A7149C", "A7152G", "T7153C", "C7156T", "T7159A", "A7161G", "-7162T", "A7163-", "T7165-", "G7275A", "A7366G", "A7375G", "G7468A", "G7477A", "G7525A", "T7622A", "T7630G", "T7642C", "G7657A", "C7688G", "G7690C", "G7782A", "G7846A", "A7918G", "C8048T", "G8160A", "A8173G", "T8239C", "C8311A", "A8323G", "G8329A", "A8364G", "C8369A", "G8375A", "C8406A", "C8410G", "C8440T", "G8441A", "T8444C", "G8455C", "G8458A", "A8531C", "A8537T", "T8636A", "T8640C", "A8653G", "T8751C", "T8832C", "C8849T", "A8874G", "G8880A", "A8922C", "G8929A", "T8947A", "C8957T", "G8968A", "A8969G", "G8971A", "T8972G", "C8974T", "T8975C", "A8976T", "G8977A", "C8978A", "A8979C", "G8980T", "A9042G", "C9068T", "T9084G", "G9097A", "C9129T"], "INT": ["M50V", "N134G", "G193E", "I201V", "N254K"], "RT-p51": ["T35K", "A39T", "K49R", "I50V", "K166R", "K201T", "T294P", "V375I", "E404D", "T409S"], "RT-p66": ["T35K", "A39T", "K49R", "I50V", "K166R", "K201T", "T294P", "V375I", "E404D", "T409S", "E514D"], "gp120": ["E4D", "E59G", "K89R", "T104N", "I106V", "-107S", "N108R", "-109N", "-111T", "-112N", "-114S", "-116I", "-117F", "-118S", "-119N", "-120I", "-121T", "-122E", "-123D", "-124G", "-126M", "K127A", "H141K", "Q155K", "N157-", "N159E", "N160T", "A172V", "S246F", "N251S", "V261D", "E262K", "T265K", "R280H", "T288A", "G293D", "H302F", "Q304E", "I305V", "A318E", "R322K", "K323E", "-326K", "N328-", "I332S", "R334Q", "S360T", "G361N", "S365W", "T366-", "W367-", "N369-", "T371-", "-381K", "-383T", "-384K", "T385N", "I386Y", "H387F", "P389Q", "V414I", "R416E", "I418V", "I425V", "N432T", "N433G", "N437S", "R474K"], "gp41": ["I24M", "S107T", "Q129D", "R133K", "G286E"], "nef": ["S8G", "A33V", "R39K", "E63D", "E65D", "K104R", "V180I", "I194L", "R196K", "F202Y"], "p1": ["N9H"], "p17": ["A15K", "R30K", "L61M", "N109K", "K114E"], "p2": ["V7A"], "p24": ["A78V", "V83T", "L111P", "S120G", "T178S", "D180E", "E187D", "R203K", "G225S"], "p6": ["F15L", "P25L", "-31E", "K33G", "E34Q", "P35S"], "p7": ["G4S"], "pro": ["K70R"], "rev": ["P67L", "I109V"], "tat": ["Q17R", "K24S", "P68L"], "vif": ["T31I", "R93K", "H110Y", "S116T", "N140P", "H183R"], "vpr": ["R32K", "G41E", "E48A", "E58Q"], "vpu": ["Q5Y", "K35R", "T61A", "-73P", "D80A"]}, "labels": {"aa": "INT: M50V, N134G, G193E, I201V, N254K; RT-p51: T35K, A39T, K49R, I50V, K166R, K201T, T294P, V375I, E404D, T409S; RT-p66: T35K, A39T, K49R, I50V, K166R, K201T, T294P, V375I, E404D, T409S, E514D; gp120: E4D, E59G, K89R, T104N, I106V, -107S, N108R, -109N, -111T, -112N, -114S, -116I, -117F, -118S, -119N, -120I, -121T, -122E, -123D, -124G, -126M, K127A, H141K, Q155K, N157-, N159E, N160T, A172V, S246F, N251S, V261D, E262K, T265K, R280H, T288A, G293D, H302F, Q304E, I305V, A318E, R322K, K323E, -326K, N328-, I332S, R334Q, S360T, G361N, S365W, T366-, W367-, N369-, T371-, -381K, -383T, -384K, T385N, I386Y, H387F, P389Q, V414I, R416E, I418V, I425V, N432T, N433G, N437S, R474K; gp41: I24M, S107T, Q129D, R133K, G286E; nef: S8G, A33V, R39K, E63D, E65D, K104R, V180I, I194L, R196K, F202Y; p1: N9H; p17: A15K, R30K, L61M, N109K, K114E; p2: V7A; p24: A78V, V83T, L111P, S120G, T178S, D180E, E187D, R203K, G225S; p6: F15L, P25L, -31E, K33G, E34Q, P35S; p7: G4S; pro: K70R; rev: P67L, I109V; tat: Q17R, K24S, P68L; vif: T31I, R93K, H110Y, S116T, N140P, H183R; vpr: R32K, G41E, E48A, E58Q; vpu: Q5Y, K35R, T61A, -73P, D80A"}}}]}]}]}]}, {"name": "NODE_0000797", "node_attrs": {"div": 0.04941, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A214T", "T1280C", "A1329T", "A1903C", "G2293A", "A2389G", "G2422A", "C2467T", "A2710G", "A2818C", "G3142A", "A3304G", "C3319T", "A3448G", "A3508G", "G3520A", "C3577T", "C3665A", "A3989G", "T4144C", "G4175A", "G4878A", "T4967A", "C5215A", "T5491C", "A5644G", "A5781T", "G5794A", "A6742G", "T6769C", "G6809A", "A6812C", "C6857A", "C6858A", "A6859C", "-7009T", "A7106G", "G7160A", "G7628A", "G7658C", "G7668A", "T7932C", "G7964A", "T8145G", "G8159T", "A8555G", "A8793G"], "INT": ["I72V"], "RT-p51": ["T403M"], "RT-p66": ["T403M", "Q524K"], "gp120": ["K320Q", "P335N", "N418E"], "gp41": ["E119Q", "R122K", "I210T", "G221R", "R277L", "I281G", "G286W", "S302N", "V321I"], "nef": ["I16V", "K151A"], "p24": ["T200S"], "p7": ["K7R"], "pro": ["E35D"], "rev": ["R39K", "G104V"], "tat": ["S75P"], "vif": ["V98I", "H127Q"], "vpu": ["I13V", "E58D", "D60E", "T61L", "E62S", "E63T"]}, "labels": {"aa": "INT: I72V; RT-p51: T403M; RT-p66: T403M, Q524K; gp120: K320Q, P335N, N418E; gp41: E119Q, R122K, I210T, G221R, R277L, I281G, G286W, S302N, V321I; nef: I16V, K151A; p24: T200S; p7: K7R; pro: E35D; rev: R39K, G104V; tat: S75P; vif: V98I, H127Q; vpu: I13V, E58D, D60E, T61L, E62S, E63T"}}, "children": [{"name": "NODE_0000798", "node_attrs": {"div": 0.05845, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T12C", "C23T", "C362T", "C531T", "G534A", "C767T", "T1271G", "T1322C", "A1449C", "A1495G", "A1771G", "-1783T", "-1785T", "-1786A", "T1795C", "A1857T", "T1864C", "T1873C", "A2362G", "T2365C", "A2380T", "A2386C", "G2392A", "G2755A", "C2968T", "A3293G", "C3303T", "A3808C", "A3816G", "A3886G", "A4270C", "A4273G", "A4816G", "C4883T", "A4904G", "A4968G", "C4976A", "C5006T", "C5062A", "C5091T", "G5376A", "G5448C", "A5499G", "A5560C", "A5563C", "A5581G", "A5607G", "T5660C", "A5664C", "A5734C", "A5793C", "A6086G", "A6164-", "C6166-", "-6206A", "G6457T", "C6632T", "A6855C", "-6967T", "-6971A", "T7107A", "G7459A", "G7517C", "T7796A", "C7843T", "C7935A", "A7936C", "A7937C", "C7941A", "G7947A", "A7984C", "A8006G", "C8047T", "G8208A", "G8385C", "G8795A", "A8804G", "T8843C", "A8852G", "A8885G", "C8904A", "T9097C", "C9108T", "-9109T"], "INT": ["K14R", "T206S"], "RT-p51": ["T400A"], "RT-p66": ["T400A"], "gp120": ["T110-", "N334T"], "gp41": ["E110D", "S165T", "P211H", "N212H", "P213Q", "I235V", "L290V"], "nef": ["E15Q"], "p17": ["P66S", "A67T"], "p24": ["L83V"], "p6": ["K31R", "Q35L", "P36Y", "V39A", "L50*"], "p7": ["K10R"], "rev": ["K30P", "H53R", "P67S"], "tat": ["K24N", "S62R", "K63Q", "I69V", "Q76T"], "vif": ["K77R", "I128V"], "vpu": ["L18A", "I43L", "V65M"]}, "labels": {"aa": "INT: K14R, T206S; RT-p51: T400A; RT-p66: T400A; gp120: T110-, N334T; gp41: E110D, S165T, P211H, N212H, P213Q, I235V, L290V; nef: E15Q; p17: P66S, A67T; p24: L83V; p6: K31R, Q35L, P36Y, V39A, L50*; p7: K10R; rev: K30P, H53R, P67S; tat: K24N, S62R, K63Q, I69V, Q76T; vif: K77R, I128V; vpu: L18A, I43L, V65M"}}, "children": [{"name": "NODE_0000799", "node_attrs": {"div": 0.06399, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["C426A", "C435T", "-713C", "G1339A", "C1756-", "A2127C", "A3046C", "C4129T", "G4156A", "G4531A", "G4549A", "A4937C", "A5146C", "C5412T", "C5454T", "G5805A", "A5806C", "-5812G", "A5828T", "T5834C", "A5840T", "A5856G", "T5860C", "-5861T", "C5884T", "A5896T", "G5917T", "A6168-", "C6183-", "A6304G", "T6395A", "G6583A", "A6636C", "G6774A", "T6838C", "T6961-", "-7001A", "-7003T", "A7021G", "A7089C", "G7633C", "G8194A", "A8196C", "C8221T", "T8239G", "A8241G", "A8608T", "A9134-"], "INT": ["E11D"], "gp120": ["E21D", "S181T", "M243I", "N327-", "-328N", "Q412P"], "gp41": ["N298T", "E313G", "G322A"], "nef": ["A49S"], "p17": ["L31M", "-127K"], "p2": ["N11A"], "p24": ["R203K"], "rev": ["E116N"], "vif": ["E117D", "H187P"], "vpu": ["-76P", "D78V", "-79G"]}, "labels": {"aa": "INT: E11D; gp120: E21D, S181T, M243I, N327-, -328N, Q412P; gp41: N298T, E313G, G322A; nef: A49S; p17: L31M, -127K; p2: N11A; p24: R203K; rev: E116N; vif: E117D, H187P; vpu: -76P, D78V, -79G"}}, "children": [{"name": "NODE_0000800", "node_attrs": {"div": 0.07929, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "A509G", "A592G", "T593G", "A606C", "A645T", "A654G", "-716G", "A774T", "G803A", "A860G", "C902T", "T1444C", "A1492C", "G1493A", "-1504T", "-1505T", "G1562A", "G1673A", "T1724C", "A1728-", "G1730-", "G1734-", "A1740G", "T1741A", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "T1986C", "C2263T", "G2273A", "A2566G", "C2806T", "G3127A", "G3220A", "C3391A", "C3475T", "A3755T", "A3769G", "A3772G", "C3922T", "T3991A", "A4012G", "A4076C", "A4078G", "A4108G", "A4178G", "G4264A", "A4474C", "T4543C", "G4677A", "C4898T", "A4956T", "A5065G", "G5140A", "G5143A", "A5159G", "C5186A", "C5221T", "C5237T", "T5293A", "T5294C", "G5312A", "G5359C", "G5361C", "G5371T", "C5372A", "G5382C", "C5397T", "C5432A", "T5451C", "G5471T", "G5472T", "C5478T", "C5491A", "T5492C", "G5493A", "C5496A", "C5538G", "C5559T", "T5708A", "A5715G", "C5727A", "A5788T", "C5789T", "A5796C", "G5800A", "C5806T", "-5809G", "-5810G", "-5866C", "A6037G", "A6044G", "T6181-", "A6186-", "A6234G", "T6271C", "G6280A", "G6284A", "G6303A", "G6336A", "G6339-", "A6581G", "A6781G", "A6791G", "A6823C", "G6871A", "G6906C", "T6932A", "C6949T", "-6964T", "C7006-", "A7111T", "T7153C", "A7372C", "A7590C", "G7688C", "C7690G", "C7723T", "G7729A", "C7747A", "G7773A", "T7864C", "G8098A", "A8173G", "G8354A", "C8477T", "A8531G", "G8534C", "A8652C", "C8720T", "T8786G", "A8798G", "G8807A", "G8868A", "C8906A", "A8918G", "T8939C", "G8977A", "C8979A"], "INT": ["I101L", "I135V"], "RT-p51": ["V60I", "K174Q", "K357R", "D432E"], "RT-p66": ["V60I", "K174Q", "K357R", "D432E"], "gp120": ["N64D", "V144I", "N159S", "I243V", "L260F", "I279V", "H280R", "T313A", "K323S", "G351A", "S360T", "T371-", "N378-"], "gp41": ["V72L", "N96T", "D109N", "D129Q", "D148E"], "nef": ["E108D"], "p17": ["Y86W", "I104L", "I107V"], "p2": ["V7A"], "p24": ["I15L"], "p7": ["R7K", "-13I"], "pro": ["L63P"], "rev": ["A15V", "D84N", "I109V"], "tat": ["E2D", "T19K", "W32F", "L39T", "N40K"], "vif": ["V31I", "R63K", "K92R", "I124L", "K160R", "G185E", "S186N"], "vpr": ["T19A", "H28N", "H45Y", "V70I", "R85P", "G86R", "G89V", "A93P", "G94S"], "vpu": ["D40E", "-69D", "-70F", "-71D"]}, "labels": {"aa": "INT: I101L, I135V; RT-p51: V60I, K174Q, K357R, D432E; RT-p66: V60I, K174Q, K357R, D432E; gp120: N64D, V144I, N159S, I243V, L260F, I279V, H280R, T313A, K323S, G351A, S360T, T371-, N378-; gp41: V72L, N96T, D109N, D129Q, D148E; nef: E108D; p17: Y86W, I104L, I107V; p2: V7A; p24: I15L; p7: R7K, -13I; pro: L63P; rev: A15V, D84N, I109V; tat: E2D, T19K, W32F, L39T, N40K; vif: V31I, R63K, K92R, I124L, K160R, G185E, S186N; vpr: T19A, H28N, H45Y, V70I, R85P, G86R, G89V, A93P, G94S; vpu: D40E, -69D, -70F, -71D"}}, "children": [{"name": "results/subtype_trees/CRF37_cpx.nwk", "node_attrs": {"div": 0.0997, "clade_membership": {"value": "CRF37_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-714A", "G762A", "T782C", "T852A", "A1115C", "G1139A", "A1241G", "A1242G", "C1350A", "T1385C", "G1394A", "G1424A", "T1451G", "-1452A", "G1472A", "G1476A", "-1503A", 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"S322E", "D324E", "K366R"], "RT-p66": ["K11S", "T39N", "K104R", "D123S", "I135T", "T173A", "K281R", "A286T", "P294T", "E297K", "S322E", "D324E", "K366R", "G490E"], "gp120": ["D4N", "-109V", "-110T", "-111S", "-114S", "-115S", "-117N", "-118R", "K140R", "I153V", "S162T", "E204N", "K265E", "Q300K", "H302Y", "S306N", "T334A", "T385-", "N432T", "L466I", "K474R"], "gp41": ["T298I", "L345Q"], "nef": ["I10L", "R22Q", "D38A", "S46R", "A50T", "A53P", "G83A", "H89F", "H116N", "I133T", "Y135F", "E158A", "C163S", "M173I", "E177D"], "p2": ["N9Q", "A11S"], "p24": ["S41T", "E128D", "T171V", "P207A"], "p6": ["G16E", "G18K", "I21V", "P25L", "Q30-", "N47S"], "p7": ["G4S", "Q9P"], "pro": ["L10I", "V11I", "K20I", "K70R"], "rev": ["E11Q", "K20N", "S54A", "I55L", "S106P", "V108G"], "tat": ["G57T", "T58A", "N67H"], "vif": ["R67T", "S95R", "T159K"], "vpr": ["E55Q"], "vpu": ["D44N"]}, "labels": {"aa": "INT: Q136K; RT-p51: K11S, T39N, K104R, D123S, I135T, T173A, K281R, A286T, P294T, E297K, S322E, D324E, K366R; RT-p66: K11S, T39N, K104R, D123S, I135T, T173A, K281R, A286T, P294T, E297K, S322E, D324E, K366R, G490E; gp120: D4N, -109V, -110T, -111S, -114S, -115S, -117N, -118R, K140R, I153V, S162T, E204N, K265E, Q300K, H302Y, S306N, T334A, T385-, N432T, L466I, K474R; gp41: T298I, L345Q; nef: I10L, R22Q, D38A, S46R, A50T, A53P, G83A, H89F, H116N, I133T, Y135F, E158A, C163S, M173I, E177D; p2: N9Q, A11S; p24: S41T, E128D, T171V, P207A; p6: G16E, G18K, I21V, P25L, Q30-, N47S; p7: G4S, Q9P; pro: L10I, V11I, K20I, K70R; rev: E11Q, K20N, S54A, I55L, S106P, V108G; tat: G57T, T58A, N67H; vif: R67T, S95R, T159K; vpr: E55Q; vpu: D44N", "clade": "CRF37_cpx"}}, "children": [{"name": "CRF37_cpx_NODE_0000001", "node_attrs": {"div": 0.10896, "clade_membership": {"value": "CRF37_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C1178T", "A1350G", "A1400G", "G1430A", "-1734A", "G1766A", "A1768C", "C1833A", "C1903A", "T1987C", "G1998A", "T2080C", "A2392G", "T2449C", "G2725A", "A3190C", "C3207T", "A3208G", "A3216G", "G3221A", "A3283G", "G3293A", "A3385G", "A3409G", "G3472A", "T3644G", "T3742C", "A3919G", "T4276G", "A4417G", "A4564G", "G4727A", "G5036A", "G5123A", "C5234G", "A5235C", "C5398A", "A5547-", "G5558C", "C5563A", "A5707C", "G5729A", "T5851A", "T5911A", "-6165A", "-6177A", "-6181C", "-6183C", "-6208A", "A6210G", "-6211C", "C6238T", "C6293T", "T6295G", "T6457G", "G6463A", "G6481A", "A6599C", "A6635G", "A6765T", "A6780C", "A6788G", "C6812A", "A6822G", "-6956A", "C6973T", "-6977A", "-6979C", "-6983A", "C7020A", "G7033A", "C7089G", "A7126G", "G7333A", "C7528T", "C7625T", "C8095A", "T8122C", "C8146T", "G8180A", "G8212A", "A8222G", "C8223T", "T8371-", "T8374-", "G8436C"], "INT": ["D167E"], "RT-p51": ["A371V", "K374R", "A376T", "A400T"], "RT-p66": ["A371V", "K374R", "A376T", "A400T", "L517V"], "gp120": ["D19E", "N261A", "N304I", "K312E", "Q320K", "P389H", "P412R"], "gp41": ["M54L", "T307V", "A322V"], "nef": ["A32P"], "p24": ["V171A"], "p6": ["-30P", "Q52K"], "pro": ["D35E", "C67Y"], "rev": ["Q11L", "L13-", "V15L", "L83I", "S92P", "P100S"], "tat": ["L8I", "A58P", "P59-", "S61T", "Q63K"], "vpr": ["D7N", "Q44V"], "vpu": ["R34Q", "R41K", "L82M"]}, "labels": {"aa": "INT: D167E; RT-p51: A371V, K374R, A376T, A400T; RT-p66: A371V, K374R, A376T, A400T, L517V; gp120: D19E, N261A, N304I, K312E, Q320K, P389H, P412R; gp41: M54L, T307V, A322V; nef: A32P; p24: V171A; p6: -30P, Q52K; pro: D35E, C67Y; rev: Q11L, L13-, V15L, L83I, S92P, P100S; tat: L8I, A58P, P59-, S61T, Q63K; vpr: D7N, Q44V; vpu: R34Q, R41K, L82M"}}, "children": [{"name": "JF683745", "node_attrs": {"div": 0.14407999999999999, "accession": "JF683745", "clade_membership": {"value": "CRF37_cpx"}, "country": {"value": "CY"}, "date": {"value": 2007.0}, "Strain_name": {"value": "CY192"}, "LANL_subtype": {"value": "CRF37_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A386G", "G428A", "T435C", "A461C", "C471G", "G480A", "A497G", "T531C", "A534G", "T549A", "C558G", "A576T", "C577T", "G592A", "G593T", "C603A", "G607A", "T636C", "T645A", "G654T", "A680T", "G683A", "G706A", "-711A", "-717G", "T728C", "A758G", "A762G", "T767C", "G771A", "C772A", "A776G", "C782T", "G791A", "A803G", "A941G", "G1271T", "T1335C", "A1412G", "G1451A", "A1452C", "-1455A", "-1456C", "-1457A", "-1459T", "A1463G", "T1468A", "A1475C", "A1486G", "G1487A", "C1492T", "A1497G", "T1501A", "T1502A", "A1508G", "A1642G", "A1644G", "G1733A", "A1784G", "A1832G", "C1960T", "A2012G", "A2026G", "A2122C", "C2209T", "A2210G", "A2211C", "G2215A", "A2227G", "A2239C", "A2350G", "G2389A", "G2518A", "T2735C", "C2779A", "T2863C", "T2905C", "G2947A", "C2978T", "G3019A", "A3091G", "A3200G", "A3259G", "A3370G", "G3431T", "A3484G", "T3493C", "G3494A", "A3524G", "T3566C", "C3567T", "A3625C", "G3679A", "A3684G", "C3712T", "C3773T", "A3795G", "T3808A", "G3816A", "A3880G", "C3970T", "C4042A", "G4063A", "G4151A", "T4153G", "A4175G", "C4180T", "T4282C", "C4405T", "A4580C", "A4644G", "A4650C", "A4679C", "C4800T", "C4803A", "A4815C", "G4816A", "T4835C", "A4878G", "C4937A", "C5116T", "C5149T", "G5195A", "T5197G", "G5200A", "A5272G", "A5293G", "A5296G", "G5386A", "C5448T", "T5457C", "A5570G", "A5587G", "A5594G", "G5620C", "A5622C", "C5641A", "C5678G", "T5688A", "G5700A", "A5711G", "C5713G", "A5738T", "A5746G", "T5781G", "A5794G", "G5812-", "-5824A", "G5915A", "A6019G", "T6025G", "G6028A", "A6030T", "A6031C", "T6046A", "C6145A", "T6154G", "A6157G", "A6158C", "-6164A", "-6166A", "-6167C", "-6168C", "-6169C", "-6170C", "-6171T", "-6172T", "-6173A", "-6174A", "-6175C", "-6178C", "-6179A", "-6180A", "C6184A", "-6186G", "T6187C", "-6189A", "-6198C", "T6199G", "A6200G", "C6202A", "-6205G", "G6207A", "-6209A", "-6213C", "-6214A", "-6215A", "-6216G", "-6217C", "-6220C", "-6222A", "A6223C", "-6225G", "-6226C", "A6232G", "T6252C", "A6282C", "G6311A", "T6322G", "A6329G", "-6339C", "-6340A", "G6345T", "T6460G", "A6470G", "C6482A", "A6508G", "G6526A", "A6538C", "C6599T", "A6605G", "C6607T", "G6638A", "G6640A", "T6655C", "C6676T", "A6685G", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "C6694T", "A6695G", "-6697A", "-6698C", "-6699A", "-6700C", "-6701A", "-6702T", "A6706G", "C6721T", "G6725T", "C6729T", "A6730G", "T6733A", "G6750A", "A6751G", "A6759T", "G6781A", "G6791A", "A6810C", "A6818G", "G6854A", "C6855A", "A6858G", "G6935A", "G6936A", "A6950G", "C6951T", "-6957C", "-6958A", "A6959G", "A6962G", "-6963G", "T6964G", "T6967A", "-6976T", "-6981T", "-6982G", "C6984A", "-6985C", "A6987G", "T6988C", "C6991T", "A6992C", "C6993A", "-6994A", "A6995T", "-6998G", "-6999A", "-7000T", "-7002G", "G7004A", "-7005A", "-7006T", "G7026A", "A7040G", "A7044G", "T7045G", "G7054A", "G7101A", "G7102C", "G7106A", "A7107T", "T7111C", "G7147T", "A7152G", "C7153G", "A7155C", "C7156A", "-7162G", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "A7246T", "A7250C", "A7265T", "G7322A", "C7324G", "C7328T", "A7373T", "A7459G", "A7533G", "A7628G", "T7630G", "C7633A", "C7655T", "A7696C", "A7714C", "G7753A", "G7754T", "A7773G", "G7790A", "G8008A", "A8023C", "A8032G", "C8048T", "C8051A", "G8055A", "C8077T", "T8097C", "C8164T", "A8191G", "A8228G", "T8251C", "A8258C", "A8263G", "A8264G", "G8267C", "T8279G", "T8281G", "A8288C", "T8290C", "C8320G", "T8321G", "T8322C", "G8349A", "G8350A", "A8367-", "G8368-", "C8369-", "A8370-", "A8372-", "G8373-", "G8375-", "G8376-", "G8377-", "A8378-", "A8402G", "G8404A", "A8426G", "T8440C", "A8459G"], "INT": ["K7R", "D11E", "R14K", "V126M", "N134D"], "RT-p51": ["N39A", "F214L", "T369A"], "RT-p66": ["N39A", "F214L", "T369A", "A446S", "V467I", "T477A", "S491L", "K530R"], "gp120": ["D21N", "N57K", "E59V", "D64E", "N102H", "T104K", "-105P", "-106L", "-107N", "V109N", "-112N", "S115T", "-116E", "N117G", "E125-", "I126-", "K127-", "M133T", "K143T", "V153I", "I156M", "S159D", "R164I", "D202E", "N206D", "P210T", "I249F", "N251D", "E262K", "S278G", "R280H", "A291S", "T292M", "D294E", "R299K", "Y302F", "E309A", "A313T", "K319T", "R322G", "A334N", "N335S", "G361N", "T366V", "-368T", "N369D", "-370G", "-371K", "-372W", "-373S", "-374Q", "-375S", "-376D", "-377S", "-378N", "-379N", "R391K", "I396V", "N397R", "R416N", "E418I", "T432L", "N433S", "N435R", "E464D", "I466L", "T471S", "K472R"], "gp41": ["V7M", "L9F", "I24L", "K77R", "N109E", "D110E", "E137D", "A151S", "D163N", "S251N", "L265S", "G293S", "I309V", "I319L", "I321V", "V322L", "C326G", "I329L", "F340A"], "nef": ["G3N", "S9-", "L10-", "V11-", "G12-", "I20M", "R21K", "V33A"], "p1": ["K4R", "I5V"], "p17": ["V7I", "M31I", "E42D", "L46V", "G49S", "S66P", "T67A", "S72T", "L75V", "T81L", "W86Y", "Q90K", "R91Q", "L104I", "V107L", "S124N"], "p2": ["-10P", "S11T", "-12I", "I13M"], "p24": ["A14N", "E180D"], "p6": ["M17V"], "p7": ["M1K", "R3S", "K7R", "P9L", "R11G", "I12K"], "pro": ["T12E", "I72V"], "rev": ["I19V", "A54T", "I59L", "T62A", "S67F", "A68E", "P77S", "P106S", "G111E", "K115E"], "tat": ["V4I", "H65R", "K71E"], "vif": ["T20A", "N22H", "K63R", "H73N", "R77Q", "I98V", "D117E", "P177L", "T188I"], "vpr": ["V31M", "V44A", "I63M", "S94N"], "vpu": ["E5H", "L12I", "T24S", "F27L", "K35R", "Q36E", "K37R", "N44I", "R47G", "D58E", "T63A", "D69N"]}, "labels": {"aa": "INT: K7R, D11E, R14K, V126M, N134D; RT-p51: N39A, F214L, T369A; RT-p66: N39A, F214L, T369A, A446S, V467I, T477A, S491L, K530R; gp120: D21N, N57K, E59V, D64E, N102H, T104K, -105P, -106L, -107N, V109N, -112N, S115T, -116E, N117G, E125-, I126-, K127-, M133T, K143T, V153I, I156M, S159D, R164I, D202E, N206D, P210T, I249F, N251D, E262K, S278G, R280H, A291S, T292M, D294E, R299K, Y302F, E309A, A313T, K319T, R322G, A334N, N335S, G361N, T366V, -368T, N369D, -370G, -371K, -372W, -373S, -374Q, -375S, -376D, -377S, -378N, -379N, R391K, I396V, N397R, R416N, E418I, T432L, N433S, N435R, E464D, I466L, T471S, K472R; gp41: V7M, L9F, I24L, K77R, N109E, D110E, E137D, A151S, D163N, S251N, L265S, G293S, I309V, I319L, I321V, V322L, C326G, I329L, F340A; nef: G3N, S9-, L10-, V11-, G12-, I20M, R21K, V33A; p1: K4R, I5V; p17: V7I, M31I, E42D, L46V, G49S, S66P, T67A, S72T, L75V, T81L, W86Y, Q90K, R91Q, L104I, V107L, S124N; p2: -10P, S11T, -12I, I13M; p24: A14N, E180D; p6: M17V; p7: M1K, R3S, K7R, P9L, R11G, I12K; pro: T12E, I72V; rev: I19V, A54T, I59L, T62A, S67F, A68E, P77S, P106S, G111E, K115E; tat: V4I, H65R, K71E; vif: T20A, N22H, K63R, H73N, R77Q, I98V, D117E, P177L, T188I; vpr: V31M, V44A, I63M, S94N; vpu: E5H, L12I, T24S, F27L, K35R, Q36E, K37R, N44I, R47G, D58E, T63A, D69N"}}}, {"name": "AF377957", "node_attrs": {"div": 0.13843, "accession": "AF377957", "clade_membership": {"value": "CRF37_cpx"}, "country": {"value": "CM"}, "date": {"value": 1997.0}, "Strain_name": {"value": "CM53392"}, "LANL_subtype": {"value": "CRF37_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C379A", "A388G", "A398G", "G458A", "C467T", "A513C", "A521G", "C522A", "A523G", "G524C", "A554G", "A569G", "G579A", "T596C", "A611G", "A613G", "G667A", "A670G", "A697C", "G712T", "C713G", "A714C", "T718-", "A743G", "T763C", "T774A", "A810G", "A852T", "A887G", "T890C", "C964T", "A980G", "C1091T", "T1148C", "C1220T", "G1268A", "A1279G", "T1296C", "T1334C", "T1362C", "-1459G", "G1474A", "G1619A", "G1731A", "A1904C", "A1908G", "C1930T", "T1978C", "G2065A", "T2101C", "G2215T", "A2254G", "C2281T", "C2386A", "C2575T", "C2589T", "T2653C", "G2714A", "C2839A", "G2878A", "A2884G", "G3010A", "T3034G", "A3060G", "C3095G", "A3097T", "C3100T", "A3124G", "A3279G", "T3358C", "T3399A", "C3542T", "G3553A", "T3559C", "T3566A", "G3569A", "G3595A", "A3637G", "G3715A", "C3763T", "G3772A", "G3825C", "C3843T", "G3846A", "G4060A", "A4112G", "A4183G", "T4204C", "G4306A", "T4534C", "T4579C", "G4696A", "T4702C", "A4739G", "G4774A", "G4779A", "T4799A", "C4826T", "C4841T", "T4868C", "T4883C", "T5018C", "A5033G", "A5042C", "A5051G", "G5086A", "A5090G", "A5112G", "A5155G", "C5235T", "A5240G", "T5275G", "T5303C", "C5306T", "G5362A", "G5375A", "A5433G", "A5493G", "A5495G", "A5496C", "A5563G", "G5566A", "C5584T", "C5614T", "G5626A", "C5664T", "G5668A", "T5688C", "G5717A", "A5721G", "C5793T", "C5860A", "T5861G", "A6022G", "A6023G", "C6052T", "A6061G", "G6076A", "C6145T", "A6158G", "T6163C", "-6164C", "-6166T", "-6178T", "-6179G", "-6180T", "A6185T", "-6186C", "-6189G", "-6198G", "G6203A", "-6205C", "-6209T", "A6212G", "-6213A", "-6214C", "-6215G", "-6216A", "-6217G", "A6219G", "-6220G", "-6222T", "-6225A", "-6226G", "T6246A", "T6287C", "C6317T", "A6326G", "A6330G", "A6333G", "-6339T", "-6340G", "G6379A", "A6420T", "A6465G", "C6466T", "A6489C", "A6573G", "T6634G", "G6647C", "T6658C", "A6683G", "-6689A", "G6716A", "A6764G", "T6766G", "A6773G", "C6780T", "C6797A", "A6809G", "G6819A", "A6821G", "T6849C", "C6859A", "C6906G", "A6926G", "C6951G", "-6957G", "-6958C", "A6959T", "-6963A", "A6966G", "-6976G", "-6981C", "-6982T", "-6985A", "A6989G", "-6994T", "-7002A", "-7005G", "-7006C", "C7124T", "A7149C", "T7150A", "C7156T", "A7158G", "G7160A", "-7162C", "G7168A", "C7264T", "A7268G", "G7283A", "T7284C", "A7297G", "G7315A", "C7324T", "C7327T", "C7372T", "A7373G", "A7375G", "T7615C", "A7620G", "T7627C", "A7628C", "T7630C", "C7658G", "A7668G", "C7688G", "G7690C", "T7692A", "A7700G", "A7701C", "T7702G", "A7765G", "T7774C", "A7791G", "C7801T", "G7868A", "C7874T", "T7930C", "C7932A", "A7935C", "A7964G", "A7998G", "C8005A", "C8011A", "T8094C", "A8130G", "G8181T", "A8208G", "A8272C", "G8276A", "A8297G", "A8305G", "A8323T", "A8364C", "-8371A", "-8374A", "T8414C", "T8431C", "T8456C", "A8458G", "A8480G", "-8487C", "A8518C", "G8528T", "C8534A", "C8552A", "G8554A", "G8558A", "T8582G", "A8584T", "T8646C", "C8690T", "C8699T", "C8723T", "A8744G", "G8774A", "G8784A", "A8806G", "T8813G", "T8847A", "A8869G", "A8870T", "A8886G", "G8888A", "T8903C", "C8934A", "T8935A", "G8936A", "G8942A", "C8957T", "T8988G", "T8993C", "G8994T", "A9005G", "T9012C", "T9014C", "T9017C", "T9018A", "C9023A", "A9026G", "T9051A", "T9073C"], "INT": ["S17T", "A23V", "S24N", "I113V"], "RT-p51": ["E40D", "T165I", "E207K", "D248E", "E322G", "Q334D", "K395R", "V435E"], "RT-p66": ["E40D", "T165I", "E207K", "D248E", "E322G", "Q334D", "K395R", "V435E", "H483Y", "S491T", "E492K"], "gp120": ["S3A", "I56M", "N57D", "N102D", "T104H", "-112S", "-116C", "R118N", "-119S", "-120R", "-121C", "-122D", "-123E", "-124G", "K127R", "F131Y", "Y145H", "P155S", "N158D", "N160S", "T162M", "Y189F", "N204S", "K212T", "E240G", "I249L", "F260L", "E265Q", "K277E", "V279I", "A288T", "I304V", "K307E", "E309V", "Q315K", "K319E", "R322K", "S323G", "I332T", "N335K", "A351G", "N358D", "T366S", "-368S", "N437T", "K472G", "V477T"], "gp41": ["I24V", "K106R", "N109H", "Q119E", "K122R", "Q129D", "I130K", "N133A", "S157N", "D163G", "A189T", "L191F", "T210N", "H211P", "R221G", "D232G", "I264T", "L277S", "G293I", "N302S", "Q323H", "A325T", "I332V"], "nef": ["S8R", "L10K", "V11E", "V30A", "K39R", "S49P", "E59A", "E62D", "R71K", "Y81F", "Y102H", "V148M", "E155G", "C169S", "E176S", "M182V", "R188K", "L198K"], "p17": ["A15E", "K18R", "I60L", "Q63S", "V82I", "I92M", "D93G", "S111N", "K112R", "T115I", "D121A", "S126-", "V128-"], "p2": ["-10T"], "p24": ["V11T", "L15I", "I27V", "T41S", "A78V", "N183S"], "p7": ["R3K"], "pro": ["T12K", "I36L", "N37S", "M89I"], "rev": ["Y28Q", "K39R", "R53S", "L55I", "G111D"], "tat": ["K40S", "K63E", "D64N", "P70S", "L74S", "P75T", "T76P"], "vif": ["G37D", "F39S", "V65I", "R167K", "K176E", "N190S"], "vpr": ["Q3R", "I46V", "R86H"], "vpu": ["P3S", "A7T", "V21I"]}, "labels": {"aa": "INT: S17T, A23V, S24N, I113V; RT-p51: E40D, T165I, E207K, D248E, E322G, Q334D, K395R, V435E; RT-p66: E40D, T165I, E207K, D248E, E322G, Q334D, K395R, V435E, H483Y, S491T, E492K; gp120: S3A, I56M, N57D, N102D, T104H, -112S, -116C, R118N, -119S, -120R, -121C, -122D, -123E, -124G, K127R, F131Y, Y145H, P155S, N158D, N160S, T162M, Y189F, N204S, K212T, E240G, I249L, F260L, E265Q, K277E, V279I, A288T, I304V, K307E, E309V, Q315K, K319E, R322K, S323G, I332T, N335K, A351G, N358D, T366S, -368S, N437T, K472G, V477T; gp41: I24V, K106R, N109H, Q119E, K122R, Q129D, I130K, N133A, S157N, D163G, A189T, L191F, T210N, H211P, R221G, D232G, I264T, L277S, G293I, N302S, Q323H, A325T, I332V; nef: S8R, L10K, V11E, V30A, K39R, S49P, E59A, E62D, R71K, Y81F, Y102H, V148M, E155G, C169S, E176S, M182V, R188K, L198K; p17: A15E, K18R, I60L, Q63S, V82I, I92M, D93G, S111N, K112R, T115I, D121A, S126-, V128-; p2: -10T; p24: V11T, L15I, I27V, T41S, A78V, N183S; p7: R3K; pro: T12K, I36L, N37S, M89I; rev: Y28Q, K39R, R53S, L55I, G111D; tat: K40S, K63E, D64N, P70S, L74S, P75T, T76P; vif: G37D, F39S, V65I, R167K, K176E, N190S; vpr: Q3R, I46V, R86H; vpu: P3S, A7T, V21I"}}}]}, {"name": "CRF37_cpx_NODE_0000002", "node_attrs": {"div": 0.10417, "clade_membership": {"value": "CRF37_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-717A", "T851C", "C1243T", "G1495A", "A1746G", "C1767-", "T1830C", "G1981A", "A2579T", "A2716C", "T2776C", "G2821A", "A3064G", "T3466C", "T3962C", "A4775G", "A4858T", "G4864A", "A4951C", "A5049C", "T5356C", "A5421G", "-5546C", "-5548G", "T6151C", "T6199C", "-6208C", "-6211G", "T6337G", "T6468A", "A6583G", "-6689G", "A6723T", "T6875G", "-6998G", "-6999A", "A7129G", "G7438A", "G7513A", "T7843C", "A7992G", "T8206C", "C8232T", "T8268C", "A8370C", "G8654A"], "gp120": ["K201N", "F205Y", "Y290F", "L341V", "-373S", "-374T"], "gp41": ["D113E", "D230G", "A310V"], "nef": ["E64D"], "p24": ["A207T"], "p6": ["T22A", "R31-", "S51P"], "p7": ["R10K"], "pro": ["I11T"], "vif": ["Q91L", "R93K", "K122T", "T155P"], "vpr": ["I84T"]}, "labels": {"aa": "gp120: K201N, F205Y, Y290F, L341V, -373S, -374T; gp41: D113E, D230G, A310V; nef: E64D; p24: A207T; p6: T22A, R31-, S51P; p7: R10K; pro: I11T; vif: Q91L, R93K, K122T, T155P; vpr: I84T"}}, "children": [{"name": "KP718917", "node_attrs": {"div": 0.14407999999999999, "accession": "KP718917", "clade_membership": {"value": "CRF37_cpx"}, "country": {"value": "CM"}, "date": {"value": 2006.0}, "Strain_name": {"value": "1130_39"}, "LANL_subtype": {"value": "CRF37_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C96T", "T141G", "C150A", "G162-", "A166G", "-167A", "C193T", "T201C", "G206A", "A263-", "G279A", "-280G", "G378T", "A389G", "G428A", "T479A", "G495A", "A516C", "T531C", "A534G", "C537T", "A541G", "T549A", "A566C", "T571A", "C590T", "G592T", "T596C", "A604T", "A609G", "A611T", "G654A", "G667A", "G696A", "G706A", "-711G", "G716T", "T718C", "A752G", "T763C", "G791A", "A810G", "C897T", "T979C", "A989G", "C1094T", "G1109A", "C1115A", "A1364G", "A1367G", "C1444T", "-1459A", "A1476G", "T1501C", "T1547C", "A1562G", "G1664A", "T1676C", "G1694A", "C1706T", "-1728A", "-1729T", "-1730A", "G1731A", "T1732A", "A1735-", "A1736-", "G1743A", "A1745G", "G1764C", "-1767G", "G1769C", "G1771A", "G1772A", "C1775A", "A1776-", "A1777-", "G1778-", "T1787C", "T1791C", "G1794A", "A1828C", "A1841G", "G1852A", "C1853A", "C1864T", "C1930T", "C1986T", "A1993G", "T1996A", "G2008A", "G2117C", "T2118A", "A2119C", "G2182A", "T2212G", "A2233G", "C2296T", "G2406A", "G2456C", "A2462G", "G2463A", "C2503T", "G2509A", "A2519G", "T2521G", "G2566A", "G2580A", "T2581C", "C2584T", "G2602A", "G2707T", 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"T6046G", "C6115T", "A6124T", "-6164A", "-6165G", "-6166C", "-6167T", "-6168A", "-6169T", "-6170A", "-6171A", "-6172T", "-6173A", "-6174A", "-6175T", "-6177A", "-6178T", "-6179G", "-6180T", "-6181C", "-6183C", "-6186C", "-6189C", "-6198G", "G6204C", "-6205T", "-6209G", "A6212C", "-6213T", "-6214A", "-6215A", "-6216G", "-6217G", "-6220A", "-6222A", "G6224-", "A6229C", "A6232G", "C6256T", "A6275G", "A6327G", "A6329G", "A6333C", "A6335C", "A6338-", "A6346G", "G6368A", "A6394C", "A6395T", "G6403A", "C6412T", "A6451G", "A6471T", "T6472G", "C6483T", "A6520G", "T6551C", "G6577A", "T6598C", "A6628G", "T6634C", "A6635T", "G6638A", "A6668G", "A6669G", "T6733A", "G6743A", "A6752C", "A6771G", "A6775C", "A6790G", "T6793G", "C6797G", "A6798G", "A6800G", "T6808C", "C6823A", "T6826A", "T6828G", "T6829G", "G6935A", "G6936A", "C6937A", "A6947C", "G6948A", "T6949C", "A6950C", "C6951T", "T6952G", "G6954T", "G6955C", "-6956A", "-6957A", "-6958T", "C6961T", "-6963G", "A6965G", "T6967G", "A6971G", "-6976T", "-6977G", "-6979A", "A6980G", "-6985T", "T6988C", "-6994G", "C6996A", "A6997T", "-7000G", "-7002G", "G7004-", "A7007-", "A7008-", "T7009-", "T7095A", "G7106A", "A7107G", "C7114T", "C7127T", "G7147A", "A7148-", "A7149-", "T7150-", "A7152G", "A7161C", "-7162A", "G7168A", "T7192C", "A7231G", "A7237G", "A7268G", "G7289C", "A7312C", "G7315A", "G7319A", "C7320T", "T7323C", "T7370G", "A7402G", "T7462C", "C7463A", "A7470G", "C7510G", "A7533G", "G7543A", "T7627G", "A7629G", "T7642G", "G7690A", "A7691C", "A7747C", "G7753A", "C7756T", "A7773C", "A7782C", "G7862A", "C7921T", "A7964G", "G7977A", "G8001A", "C8026T", "C8051A", "G8055A", "C8092A", "A8152G", "C8156T", "A8195G", "G8234A", "G8255A", "A8275C", "G8280T", "A8288T", "A8323C", "T8333C", "T8384C", "A8446G", "A8478G", "-8487A", "A8525G", "G8526C", "G8561A", "A8584T", "C8676T", "A8701T", "T8711C", "C8741T", "G8799A", "G8822A", "A8837G", "G8894A", "T8896A", "A8904C", "A8922G", "G8945A", "T8972C"], "INT": ["A21T", "A23V", "D25E", "L45I", "K219N", "N222K"], "RT-p51": ["V8H", "N39K", "R104K", "D121H", "S123D", "I142V", "S162Y", "E204D", "E207A", "K238R", "D248N", "A272P", "I329L", "R366K", "V375I", "T377M", "V435I"], "RT-p66": ["V8H", "N39K", "R104K", "D121H", "S123D", "I142V", "S162Y", "E204D", "E207A", "K238R", "D248N", "A272P", "I329L", "R366K", "V375I", "T377M", "V435I", "E449D", "H480Y", "H483Y", "E490A", "A502V", "S515L", "V531I"], "gp120": ["N57K", "D64G", "T104S", "-105Y", "-106N", "-107I", "S111T", "-112T", "-116N", "E125-", "I126-", "K127-", "K141E", "N158S", "N160S", "N161T", "T162Q", "A172T", "T181S", "N206M", "P210L", "N261S", "E262K", "N272G", "D294E", "D297N", "K300Q", "N306S", "K307N", "Q315G", "K316E", "S323K", "H324Q", "F325W", "G361K", "S365H", "T366L", "W367F", "-368N", "-370S", "-371E", "-372W", "-375N", "-376E", "-377S", "V414E", "E418R", "T432S", "N435A", "K472G", "E479Q"], "gp41": ["A6I", "V7A", "S23A", "K56R", "K77R", "Y108Q", "N109S", "I130L", "E148D", "S157T", "N160T", "V187I", "R221G", "G225E", "R233K", "S251N", "F263L", "I298V", "V311I", "V318I", "R324S", "C326F", "I329F"], "nef": ["Q35R", "R46G", "S49T", "E62Q", "Y81F", "Y120F", "V153I", "E176K", "F185Y", "R188Q", "I194V"], "p17": ["A15S", "M31I", "A54T", "I61L", "S66P", "T67A", "L68F", "K69R", "S72T", "F79Y", "W86L", "Q90L", "I92V", "V107I", "S111N", "D121N", "S124N", "S126G", "K127N", "V128T"], "p2": ["A7V", "Q8T", "Q9N", "S11-"], "p24": ["V11T", "I27V", "V83A", "D128E"], "p6": ["M17I", "V21M", "-26K", "K27Q", "E29-", "A39T", "*50S"], "p7": ["S4G", "I12T"], "pro": ["I15V", "L19I", "P63L"], "rev": ["N20K", "K39R", "L60F", "A68E", "H82N", "I102V", "S103F", "N116S"], "tat": ["T39I", "H67N"], "vif": ["I31T", "Y44F", "G60R", "K63E", "H83S", "D113N", "S118A", "Q127K", "K159R", "K176E", "R181K"], "vpr": ["Q3R", "A19T", "I46V", "R86N", "P93S"], "vpu": ["E5A", "K32Q", "R34K", "R41S", "N44K"]}, "labels": {"aa": "INT: A21T, A23V, D25E, L45I, K219N, N222K; RT-p51: V8H, N39K, R104K, D121H, S123D, I142V, S162Y, E204D, E207A, K238R, D248N, A272P, I329L, R366K, V375I, T377M, V435I; RT-p66: V8H, N39K, R104K, D121H, S123D, I142V, S162Y, E204D, E207A, K238R, D248N, A272P, I329L, R366K, V375I, T377M, V435I, E449D, H480Y, H483Y, E490A, A502V, S515L, V531I; gp120: N57K, D64G, T104S, -105Y, -106N, -107I, S111T, -112T, -116N, E125-, I126-, K127-, K141E, N158S, N160S, N161T, T162Q, A172T, T181S, N206M, P210L, N261S, E262K, N272G, D294E, D297N, K300Q, N306S, K307N, Q315G, K316E, S323K, H324Q, F325W, G361K, S365H, T366L, W367F, -368N, -370S, -371E, -372W, -375N, -376E, -377S, V414E, E418R, T432S, N435A, K472G, E479Q; gp41: A6I, V7A, S23A, K56R, K77R, Y108Q, N109S, I130L, E148D, S157T, N160T, V187I, R221G, G225E, R233K, S251N, F263L, I298V, V311I, V318I, R324S, C326F, I329F; nef: Q35R, R46G, S49T, E62Q, Y81F, Y120F, V153I, E176K, F185Y, R188Q, I194V; p17: A15S, M31I, A54T, I61L, S66P, T67A, L68F, K69R, S72T, F79Y, W86L, Q90L, I92V, V107I, S111N, D121N, S124N, S126G, K127N, V128T; p2: A7V, Q8T, Q9N, S11-; p24: V11T, I27V, V83A, D128E; p6: M17I, V21M, -26K, K27Q, E29-, A39T, *50S; p7: S4G, I12T; pro: I15V, L19I, P63L; rev: N20K, K39R, L60F, A68E, H82N, I102V, S103F, N116S; tat: T39I, H67N; vif: I31T, Y44F, G60R, K63E, H83S, D113N, S118A, Q127K, K159R, K176E, R181K; vpr: Q3R, A19T, I46V, R86N, P93S; vpu: E5A, K32Q, R34K, R41S, N44K"}}}, {"name": "EF116594", "node_attrs": {"div": 0.14354, "accession": "EF116594", "clade_membership": {"value": "CRF37_cpx"}, "country": {"value": "CM"}, "date": {"value": 2000.0}, "Strain_name": {"value": "00CMNYU926"}, "LANL_subtype": {"value": "CRF37_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A356G", "G361C", "A417C", "T506C", "T602C", "A619G", "T662-", "A663-", "A664-", "G665-", "A666-", "G667-", "C668T", "A697G", "-711T", "G771T", "A776G", "A866T", "A881C", "A891G", "T892C", "A903G", "G911A", "C917T", "A941G", "A968C", "A1002C", "T1003A", "A1017T", "A1070G", "A1074G", "G1078C", "G1260T", "T1296C", "G1301A", "G1438C", "-1459G", "C1490T", "T1501A", "G1586A", "A1642G", "G1661A", "-1734A", "A1768-", "G1769-", "A1770-", "G1771-", "G1772-", "A1774G", "A1840G", "C1865T", "T1954A", "G2007A", "A2026G", "T2035C", "T2101C", "G2111A", "A2113C", "A2140G", "A2174T", "G2215A", "A2224G", "A2241G", "A2243G", "C2365A", "A2374C", "T2380C", "C2386T", "T2443C", "A2524G", "T2545A", "A2611G", "G2683A", "G2686A", "T2719C", "C2831T", "C2839T", "G2847T", "A2925G", "A2929G", "C2941T", "C2953T", "A2969G", "C2978A", "T2979A", "G3015T", "G3016T", "G3017T", "A3018T", "C3023G", "A3048T", "T3049A", "A3054T", "A3079C", "A3080-", "A3120T", "C3128T", "T3139A", "G3165A", "T3181C", "A3200G", "C3232T", "G3236A", "A3279G", "T3303G", "G3307T", "A3388G", "C3415T", "C3432G", "T3445C", "T3450A", "G3477A", "G3491A", "C3500T", "A3502C", "A3574G", "A3637C", "T3644A", "A3664G", "G3667A", "C3668A", "A3670T", "A3682G", "A3684G", "G3737A", "T3757A", "T3771G", "C3773G", "G3812A", "G3846A", "C3908T", "A3937G", "T3943C", "A3964G", "A3979G", "T4009C", "A4030G", "G4063A", "A4084G", "T4085C", "A4107G", "T4207C", "C4543T", "A4580C", "G4616A", "T4674C", "C4728G", "A4735G", "T4769A", "A4773T", "C4786G", "T4799A", "T4805G", "A4806C", "A4811G", "T4956A", "A4966G", "G4968A", "A4993C", "A5005G", "G5086A", "A5090G", "T5228C", "A5233G", "G5289A", "C5294T", "A5299G", "-5320T", "A5372G", "T5412G", "T5457C", "T5466C", "C5508A", "C5551G", "T5559C", "C5569A", "C5578T", "A5594G", "G5626T", "C5627A", "G5629T", "C5641T", "T5686C", "G5699A", "A5708G", "A5727C", "C5734A", "C5860A", "T5861A", "C5862A", "A5863C", "A5867C", "A5868T", "T5887C", "G5907A", "A5946C", "A5955T", "A5957C", "C5984-", "A5985T", "T5992-", "A6008-", "A6016G", "G6017A", "T6026G", "A6030G", "A6031T", "G6041A", "G6076A", "T6085G", "G6086A", "A6087T", "G6088A", "A6108G", "C6109A", "A6111C", "G6114A", "C6115G", "C6116T", "T6129A", "T6142C", "A6157T", "T6160A", "T6161-", "G6162-", "T6163-", "A6176-", "A6182-", "C6184T", "-6186G", "-6189G", "A6191C", "C6193T", "G6195A", "C6196G", "-6198C", "-6205G", "-6209A", "-6213G", "-6214C", "-6215T", "-6216T", "-6217A", "-6220T", "A6221G", "-6222G", "-6225G", "-6226A", "A6229G", "G6234A", "T6246A", "G6273A", "A6323G", "A6324G", "A6326G", "A6335G", "-6339C", "-6340T", "C6347T", "C6369T", "C6416T", "T6418C", "A6464G", "C6466A", "A6489G", "C6499T", "A6525G", "A6532G", "C6545T", "A6547G", "A6573G", "G6575A", "G6581A", "G6595A", "T6610C", "G6631A", "C6636A", "C6641A", "A6664G", "C6665T", "C6666T", "G6716A", "T6745C", "T6758C", "T6760A", "A6764G", "A6765C", "C6807T", "A6809G", "A6810C", "-6830G", "-6831G", "-6832G", "-6833A", "-6834A", "-6835C", "A6836-", "A6837-", "C6838-", "A6840C", "C6850G", "T6916C", "T6922C", "A6932T", "T6952A", "-6963C", "A6966C", "T6968A", "G6969C", "G6970C", "A6972G", "A6975C", "-6976G", "-6977C", "C6978A", "-6979G", "-6981T", "-6982T", "-6983C", "-6985A", "C6991G", "-6994T", "A7001-", "-7005G", "-7006G", "A7040G", "A7042C", "A7108G", "T7111C", "C7127A", "A7149T", "C7156A", "A7158C", "T7159A", "-7162T", "C7164A", "A7183G", "C7201T", "G7256A", "G7269A", "C7372T", "C7393T", "T7432C", "A7583C", "C7584A", "T7591C", "C7597A", "T7615C", "A7626T", "T7627C", "C7633T", "T7642A", "A7676G", "G7677A", "C7678A", "C7684T", "G7769A", "A7782G", "G7790A", "A7791G", "A7818G", "G8116A", "A8119G", "C8120A", "G8137T", "T8167C", "G8239A", "C8320T", "A8323G", "G8363A", "T8390G", "G8404A", "A8423G", "A8459G", "-8487T", "T8492A", "A8527G", "G8537T", "G8555A", "G8558T", "T8568C", "T8646C", "C8651T", "G8682A"], "INT": ["E13K", "S24N", "K111R", "V281M"], "RT-p51": ["E6N", "T27S", "K49R", "I50V", "S162C", "E207D", "S251I", "K277R", "I292V", "L295K", "R307I", "E308L", "L310V", "Y318L", "D320V", "E328D", "I329-", "R357K", "T369A", "V381I", "K395R", "M403R", "E404D"], "RT-p66": ["E6N", "T27S", "K49R", "I50V", "S162C", "E207D", "S251I", "K277R", "I292V", "L295K", "R307I", "E308L", "L310V", "Y318L", "D320V", "E328D", "I329-", "R357K", "T369A", "V381I", "K395R", "M403R", "E404D", "A446G", "L452Q", "R461K", "V466I", "L469F", "E514D", "L517I", "L525I", "K530R", "V548I", "V559G", "L560V"], "gp120": ["S3N", "N5L", "R18K", "K31T", "D34V", "T35P", "H44-", "N52-", "E55K", "L58V", "E59G", "E63K", "H77Q", "E78I", "D85G", "Q86P", "S87K", "V92E", "-116K", "N117S", "R118L", "-119D", "-120G", "-121G", "-122E", "-123E", "-124I", "F131Y", "R140K", "N157G", "N158D", "S159N", "N161E", "A172V", "H188Y", "N204E", "K212R", "K224R", "E240G", "E241K", "V243M", "P263T", "P271F", "A288T", "Y302Q", "N304A", "A318V", "K319A", "S323N", "-326G", "-327N", "N328T", "K329-", "I332M", "T360S", "-370T", "-371T", "-372T", "-375Q", "-376I", "-377P", "-378N", "-379R", "-380T", "-381T", "-382D", "-383G", "-384N", "I396V", "L425M", "T432I", "N434K", "N435T", "T436D", "V468I"], "gp41": ["M54L", "T94H", "Y108L", "S125E", "A156T", "S157N", "N160S", "D163S", "K172R", "L273I"], "nef": ["R21K", "E62G", "E65P", "Y102H", "V114I"], "p1": ["K4R"], "p17": ["S9T", "K28Q", "K95R", "S111Q", "Q113T", "K114-", "T115-", "D121G", "S126C", "V128I"], "p2": ["S5T", "-10T"], "p24": ["V11I", "A14S", "E45D", "Q50H", "M54A", "I58V", "E79D", "I91H", "M96L", "I115V", "G116A", "A177S"], "p6": ["M17V", "-30G", "D32-"], "p7": ["I12N"], "pro": ["R70K"], "rev": ["V15A", "G90R", "T91D", "V97L", "S107P"], "tat": ["N12K", "P59A", "H65N", "P68S"], "vif": ["Y30H", "H48D", "K50R", "D61E", "K63W", "T67R", "H73Q", "T74P", "L124I", "Q127R", "V128I", "Q136P", "N140S", "R167K"], "vpr": ["R62K"], "vpu": ["A7Y", "A8S", "F27L", "R31K", "K37R", "E40D", "L43I"]}, "labels": {"aa": "INT: E13K, S24N, K111R, V281M; RT-p51: E6N, T27S, K49R, I50V, S162C, E207D, S251I, K277R, I292V, L295K, R307I, E308L, L310V, Y318L, D320V, E328D, I329-, R357K, T369A, V381I, K395R, M403R, E404D; RT-p66: E6N, T27S, K49R, I50V, S162C, E207D, S251I, K277R, I292V, L295K, R307I, E308L, L310V, Y318L, D320V, E328D, I329-, R357K, T369A, V381I, K395R, M403R, E404D, A446G, L452Q, R461K, V466I, L469F, E514D, L517I, L525I, K530R, V548I, V559G, L560V; gp120: S3N, N5L, R18K, K31T, D34V, T35P, H44-, N52-, E55K, L58V, E59G, E63K, H77Q, E78I, D85G, Q86P, S87K, V92E, -116K, N117S, R118L, -119D, -120G, -121G, -122E, -123E, -124I, F131Y, R140K, N157G, N158D, S159N, N161E, A172V, H188Y, N204E, K212R, K224R, E240G, E241K, V243M, P263T, P271F, A288T, Y302Q, N304A, A318V, K319A, S323N, -326G, -327N, N328T, K329-, I332M, T360S, -370T, -371T, -372T, -375Q, -376I, -377P, -378N, -379R, -380T, -381T, -382D, -383G, -384N, I396V, L425M, T432I, N434K, N435T, T436D, V468I; gp41: M54L, T94H, Y108L, S125E, A156T, S157N, N160S, D163S, K172R, L273I; nef: R21K, E62G, E65P, Y102H, V114I; p1: K4R; p17: S9T, K28Q, K95R, S111Q, Q113T, K114-, T115-, D121G, S126C, V128I; p2: S5T, -10T; p24: V11I, A14S, E45D, Q50H, M54A, I58V, E79D, I91H, M96L, I115V, G116A, A177S; p6: M17V, -30G, D32-; p7: I12N; pro: R70K; rev: V15A, G90R, T91D, V97L, S107P; tat: N12K, P59A, H65N, P68S; vif: Y30H, H48D, K50R, D61E, K63W, T67R, H73Q, T74P, L124I, Q127R, V128I, Q136P, N140S, R167K; vpr: R62K; vpu: A7Y, A8S, F27L, R31K, K37R, E40D, L43I"}}}]}]}, {"name": "results/subtype_trees/CRF19_cpx.nwk", "node_attrs": {"div": 0.1225, "clade_membership": {"value": "CRF19_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T9C", "T45C", "G88A", "C96A", "-161G", "-215A", "-216A", "A659G", "G690A", "G702A", "G706A", "-711A", "-714C", "-717G", "C731T", "T746C", "G747C", "C748T", "A749G", "A752G", "T774C", "A776G", "G785A", "T794C", "A818G", "G829A", "T890C", "T892C", "G893C", "C897T", "T904C", "C917T", "G920A", "T926C", "T944G", "C974T", "G978T", "A989G", "C1005G", "C1040T", "A1067G", "G1078C", "A1079C", "A1089G", "G1090C", "C1094T", "G1109A", "A1115G", "C1118A", "G1199A", "A1205G", "C1214T", "A1230C", "T1237A", "C1247A", "T1253C", "A1263T", "G1271T", "C1280T", "C1299T", "G1313A", "T1316C", "C1322T", "G1328A", "T1329A", "C1331T", "T1334C", "T1335C", "A1346G", "G1404A", "C1406T", "G1418A", "T1439C", "C1446A", "A1447C", "C1449A", "-1452T", "-1455G", "-1456C", "-1457T", "-1459C", "G1474A", "C1478T", "C1492T", "G1498A", "-1503G", "A1532G", "C1536A", "C1541A", "G1553A", "G1586A", "A1595G", "C1610T", "G1619A", "A1656C", "T1676C", "T1679C", "C1681T", "-1728T", "-1730T", "A1735-", "A1736-", "T1749C", "-1756A", "G1760A", "G1771A", "G1772A", "T1790C", "T1796C", "A1840G", "T1857A", "A1858G", "C1864T", "C1873T", "G1981A", "T1987C", "A2003C", "A2005G", "G2008A", "A2032G", "C2057A", "A2063T", "T2080C", "T2083C", "T2104C", "C2127A", "A2140G", "G2155A", "A2305G", "C2335T", "A2341G", "T2347C", "G2362A", "C2365T", "T2380A", "C2386T", "G2389A", "A2392G", "T2393C", "A2398G", "C2420T", "A2422G", "G2428A", "G2431T", "T2452C", "C2485T", "G2578A", "T2597C", "G2602T", "C2613A", "C2638T", "G2693A", "G2707A", "G2710A", "A2713G", "A2722G", "A2727G", "A2728G", "A2773G", "T2776C", "A2788T", "C2818A", "A2829C", "G2830A", "C2839A", "C2845A", "A2872G", "T2899C", "G2914A", "A2925G", "G2926A", "A2929G", "G2932A", "C2944T", "T2968A", "A2969G", "G2972A", "G2980A", "T2983A", "G2986A", "T3002C", "G3010A", "T3034A", "C3046G", "A3080G", "G3085A", "A3142G", "A3165T", "T3170G", "C3171G", "T3175C", "A3205G", "G3218A", "A3224T", "C3225T", "A3238G", "A3280G", "T3303G", "G3316A", "T3319C", "A3334G", "C3359T", "A3388G", "G3398A", "G3439A", "G3448A", "C3449T", "G3463A", "C3469T", "A3487G", "G3490A", "T3496C", "C3499T", "G3508C", "A3520G", "A3529G", "T3535A", "C3542A", "C3567T", "T3577C", "C3589T", "G3595A", "C3610T", "G3616A", "C3628T", "G3630A", "A3651G", "A3665C", "C3668T", "G3674A", "A3676G", "A3684G", "C3688A", "T3695G", "G3816A", "G4092C", "G4131C", "A4213G", "C4436T", "A4437C", "A4555T", "G4582A", "C4652T", "G4695A", "C4728A", "A4735G", "G4774A", "G4786A", "G4816A", "C4826A", "A5062G", "A5063T", "A5240G", "G5246A", "A5247C", "T5356C", "G5363A", "A5421G", "A5447C", "C5448A", "G5482C", "T5484G", "A5496G", "G5561A", "C5614G", "G5620C", "A5685G", "T5687A", "A5708G", "G5729A", "A5962G", "G6076A", "G6079A", "T6163C", "A6176-", "A6182-", "C6184-", "A6185-", "T6187-", "A6188-", "A6191-", "T6298C", "G6311A", "A6330-", "A6333-", "A6335-", "T6337-", "A6338-", "A6394C", "A6464G", "C6482A", "C6483A", "A6489G", "A6535G", "G6575A", "A6662C", "C6717T", "A6754G", "A6822G", "C6951G", "T6988-", "A6989G", "G7033A", "C7174T", "A7246G", "G7269A", "G7333A", "G7477A", "C7528T", "T7615C", "T7624C", "C7625T", "T7630G", "T7642C", "C7651A", "G7657A", "T7708A", "C7921T", "C7959A", "C7984A", "G8006A", "T8097C", "G8134C", "G8216A", "C8232T", "G8267A", "C8369T", "G8375T", "C8385G", "T8390A", "A8402G", "A8403C", "G8404A", "C8406A", "C8412G", "C8413A", "T8414G", "A8429G", "A8446G", "T8450C", "T8451C", "A8453G", "T8456A", "A8465G", "T8480C", "-8487A", "-8490G", "T8504C", "G8528A", "C8543T", "G8558T", "T8585C", "T8595G", "T8597A", "T8608A", "T8636A", "T8640C", "A8643G", "A8647G", "C8648G", "C8651T", "G8678T", "A8772G", "A8795G", "C8809A", "A8829T", "C8832T", "C8843T", "A8844G", "T8845C", "G8852A", "G8864T", "A8868C", "A8869C", "G8875A", "G8885A", "A8886G", "A8893G", "G8894A", "G8898A", "T8903C", "C8913T", "G8915T", "A8916G", "T8923A", "A8924G", "C8928A", "G8931A", "A8932T", "G8933A", "C8934A", "A8967C", "G8968A", "A8970G", "G8971T", "G8974T", "T8993G"], "INT": ["R14K", "G106A", "Q221S"], "RT-p51": ["E169D", "T173K", "A200T", "K211R", "Q245T", "D248E", "D250E", "A272S", "K277R", "D291E", "I292V", "V293I", "I329V", "R357M", "S359G", "V375I", "T377L", "M403R", "V435M"], "RT-p66": ["E169D", "T173K", "A200T", "K211R", "Q245T", "D248E", "D250E", "A272S", "K277R", "D291E", "I292V", "V293I", "I329V", "R357M", "S359G", "V375I", "T377L", "M403R", "V435M", "E471D", "H480Q", "H483N", "S491L", "R512K", "N519S", "K524Q", "E527K", "K530R", "S534A"], "gp120": ["N108-", "N160-", "N161-", "S162-", "K201N", "P210K", "K212R", "E241K", "A288V", "N369-"], "gp41": ["N109K", "P219H", "V235I", "L265S", "V290L", "D305N", "A310V", "A322I", "F340L"], "nef": ["Q15K", "I20M", "R21Q", "P24E", "Q35R", "D38E", "F85V", "D98E", "I101V", "Y102W", "K144E", "A151E", "A156D", "I168A", "E174D", "E176P", "R178K", "M182V", "K184R", "D186N", "L191F", "K192E", "I194K", "E197I", "L198M"], "p1": ["S9H"], "p17": ["A119T", "G123R", "S124N", "K127Q"], "p2": ["Q8T", "-10S", "-12T"], "p24": ["A6L", "S33N", "M54T", "I58T", "D71E", "V83L", "P92A", "G116A", "F169Y", "T178S", "E180D", "S200T", "G225S"], "p6": ["P1L", "M17F", "S23-", "S24P", "P25S", "-26Q", "E29D", "R31K", "*50L"], "p7": ["R3K", "Q9L", "R11K", "I12V", "I13V", "L24I"], "pro": ["K69Q", "M89L"], "rev": ["V16I", "R53H", "G96Q"], "tat": ["N24T", "V36L", "R62H", "P84T"], "vif": ["G37K", "H48N", "K50R", "R67K", "R77K", "H80Q", "T159S"], "vpr": ["I46V", "E48T", "I84T"], "vpu": ["P3A", "E5Q", "F27Y", "R41K"]}, "labels": {"aa": "INT: R14K, G106A, Q221S; RT-p51: E169D, T173K, A200T, K211R, Q245T, D248E, D250E, A272S, K277R, D291E, I292V, V293I, I329V, R357M, S359G, V375I, T377L, M403R, V435M; RT-p66: E169D, T173K, A200T, K211R, Q245T, D248E, D250E, A272S, K277R, D291E, I292V, V293I, I329V, R357M, S359G, V375I, T377L, M403R, V435M, E471D, H480Q, H483N, S491L, R512K, N519S, K524Q, E527K, K530R, S534A; gp120: N108-, N160-, N161-, S162-, K201N, P210K, K212R, E241K, A288V, N369-; gp41: N109K, P219H, V235I, L265S, V290L, D305N, A310V, A322I, F340L; nef: Q15K, I20M, R21Q, P24E, Q35R, D38E, F85V, D98E, I101V, Y102W, K144E, A151E, A156D, I168A, E174D, E176P, R178K, M182V, K184R, D186N, L191F, K192E, I194K, E197I, L198M; p1: S9H; p17: A119T, G123R, S124N, K127Q; p2: Q8T, -10S, -12T; p24: A6L, S33N, M54T, I58T, D71E, V83L, P92A, G116A, F169Y, T178S, E180D, S200T, G225S; p6: P1L, M17F, S23-, S24P, P25S, -26Q, E29D, R31K, *50L; p7: R3K, Q9L, R11K, I12V, I13V, L24I; pro: K69Q, M89L; rev: V16I, R53H, G96Q; tat: N24T, V36L, R62H, P84T; vif: G37K, H48N, K50R, R67K, R77K, H80Q, T159S; vpr: I46V, E48T, I84T; vpu: P3A, E5Q, F27Y, R41K", "clade": "CRF19_cpx"}}, "children": [{"name": "CRF19_cpx_NODE_0000001", "node_attrs": {"div": 0.13394999999999999, "clade_membership": {"value": "CRF19_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C606A", "T645A", "T767C", "A1367G", "T1403C", "A1458G", "G1543A", "T1744C", "G1794A", "A1804G", "A1882T", "T1978G", "A2059G", "G2566A", "T2708C", "C2828A", "C2885T", "C2909T", "C3033A", "G3037A", "A3154G", "T3224C", "T3225A", "G3304A", "A3715G", "T3757C", "A4306G", "C4471T", "C4474T", "G5086A", "T5281C", "G5362A", "A5448G", "C5551T", "G5717A", "T5781G", "G5864A", "T5887C", "T6046C", "-6164A", "-6165C", "-6168A", "-6169T", "-6170A", "-6195C", "-6205A", "-6216T", "-6217A", "-6220T", "-6222A", "-6225A", "-6226G", "A6277G", "C6318A", "-6335C", "-6337G", "G6368A", "G6578A", "C6636A", "C6726G", "A6774G", "G6791A", "A6800C", "A6810C", "-6830G", "-6833A", "-6834A", "-6835C", "A6836-", "A6837-", "C6838-", "C6850T", "T6875G", "-6957A", "-6958T", "-6962A", "T6967C", "-6983C", "-6985A", "-6994G", "-6996A", "-6997G", "A7066G", "C7089A", "C7124A", "T7150G", "-7164A", "C7267-", "C7463A", "T7702G", "A7938C", "G8050A", "T8091G", "A8191G", "A8195C", "C8196T", "G8330C", "C8331T", "C8342A", "G8368A", "T8369A", "G8385A", "C8534A", "C8603T", "C8666A", "T8687C", "T8720C", "G8786T", "C8939T"], "RT-p51": ["P313Q", "L377Q"], "RT-p66": ["P313Q", "L377Q"], "gp120": ["K127R", "P155Q", "-160S", "-161Q", "A172T", "V242I", "A291G", "A313T", "K316Q", "K319T", "-327N", "N328-", "L341V", "P412Q", "L424I", "N432K"], "gp41": ["H212P", "F263C", "T298L", "A343L"], "nef": ["S9K", "D108E"], "p17": ["L104I"], "p2": ["T12A"], "p6": ["A39T", "K42R"], "p7": ["R26K"], "pro": ["D60E"], "rev": ["A68T", "K115E", "N116T"], "tat": ["P59S", "T77P"], "vif": ["R167K"], "vpr": ["R86Q"], "vpu": ["D58E"]}, "labels": {"aa": "RT-p51: P313Q, L377Q; RT-p66: P313Q, L377Q; gp120: K127R, P155Q, -160S, -161Q, A172T, V242I, A291G, A313T, K316Q, K319T, -327N, N328-, L341V, P412Q, L424I, N432K; gp41: H212P, F263C, T298L, A343L; nef: S9K, D108E; p17: L104I; p2: T12A; p6: A39T, K42R; p7: R26K; pro: D60E; rev: A68T, K115E, N116T; tat: P59S, T77P; vif: R167K; vpr: R86Q; vpu: D58E"}}, "children": [{"name": "AY588971", "node_attrs": {"div": 0.16999999999999998, "accession": "AY588971", "clade_membership": {"value": "CRF19_cpx"}, "country": {"value": "CU"}, "date": {"value": 1999.0}, "Strain_name": {"value": "CU29"}, "LANL_subtype": {"value": "CRF19_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G158A", "C160A", "T163A", "A166-", "G202A", "-217T", "G223A", "A302T", "A303T", "G310A", "G328A", "G354A", "T362G", "G378C", "C379G", "A380G", "A399C", "A417C", "A426C", "G455A", "T571A", "A576G", "G579A", "A585G", "C586T", "T596C", "A605G", "T655C", "C679A", "A702G", "A725G", "A727C", "T728C", "T729A", "A730G", "T731C", "C733A", "C794T", "G998A", "A1002G", "A1025G", "G1077A", "C1078A", "C1079T", "T1100C", "G1115A", "C1220T", "C1253T", "C1335T", "A1450G", "T1452A", "A1474G", "T1492C", "C1514T", "C1517T", "T1610A", "A1622G", "C1679T", "-1734G", "-1735A", "-1736G", "G1740A", "A1741T", "A1742G", "A1745C", "A1746-", "C1747-", "C1748-", "G1764A", "A1771C", "A1772G", "G1773A", "C1775A", "A1776G", "C1796T", "G1835A", "C1853T", "A1907G", "A1926G", "A2008G", "A2170T", "A2210G", "G2215T", "A2241G", "C2296T", "G2330A", "C2356T", "G2392A", "G2398A", "G2473A", "T2479C", "A2498G", "T2542A", "C2584T", "T2638C", "G2686A", "A2688C", "G2704A", "A2743C", "G2833A", "A2845C", "G2929A", "A2962G", "C3100A", "A3164T", "C3223T", "A3226G", "A3292G", "A3398G", "T3399A", "T3449A", "G3477A", "T3493G", "T3497A", "G3553A", "T3754G", "C3756T", "T3762A", "T3779C", "T3799A", "C3857A", "G3859A", "G3916A", "G4063A", "C4079T", "A4112G", "T4147G", "G4151A", "T4153G", "T4656C", "T4691A", "G4727A", "C4757T", "G4864A", "C4937T", "T5003C", "T5028C", "A5049G", "G5099A", "A5121C", "T5147C", "G5159A", "A5167G", "A5176G", "A5187G", "T5206C", "G5212A", "G5240A", "C5247G", "A5248T", "A5376G", "T5397G", "G5421A", "G5437C", "C5445T", "A5453T", "T5466C", "T5471A", "A5480T", "A5495G", "G5496A", "C5560A", "T5568C", "A5625T", "G5626T", "G5635A", "G5685A", "A5687T", "G5700A", "A5729G", "G5730A", "T5731C", "T5788C", "T5850C", "C5862T", "A5914T", "A6073G", "A6079G", "A6157G", "-6166C", "-6167A", "-6171T", "-6172C", "-6173T", "-6174A", "-6175T", "C6190-", "-6196T", "A6197T", "-6198C", "-6200A", "-6201G", "-6202C", "-6203T", "-6204C", "-6207G", "-6208A", "-6211G", "-6212A", "-6213T", "-6214A", "-6215A", "-6218A", "-6219G", "-6221A", "-6223T", "A6249C", "A6261C", "G6274A", "-6330G", "T6331C", "-6333G", "T6356C", "C6370A", "T6373C", "T6457G", "C6469T", "G6526C", "A6574G", "A6575G", "A6589T", "C6618T", "T6632C", "T6637G", "G6638A", "A6647C", "A6683C", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "A6695G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6713G", "A6714C", "G6725A", "C6752A", "A6773G", "A6799T", "G6822A", "C6823A", "-6831G", "-6832G", "T6916C", "T6952G", "-6956G", "A6959G", "-6961A", "-6963A", "-6966G", "-6968A", "-6969G", "-6970T", "-6972T", "-6973A", "-6984C", "-6988T", "-6995C", "-6998G", "-6999T", "-7000A", "-7002A", "-7005A", "-7006T", "C7084T", "G7094A", "T7105C", "G7150A", "C7156T", "A7157G", "A7158C", "T7159A", "-7162T", "-7267G", "T7309C", "C7313A", "C7411T", "G7426A", "C7433T", "C7579T", "C7590A", "C7624T", "C7642T", "A7657G", "C7688A", "G7690C", "A7700G", "A7773G", "A7782G", "A7796T", "T7801C", "G7835A", "T7852A", "G7862A", "A7903G", "C7939T", "G7944A", "G7997A", "A7998G", "T8025C", "G8036A", "C8037T", "C8044G", "T8159G", "T8172C", "G8173A", "G8181T", "A8184G", "A8193G", "A8204G", "A8222G", "C8223T", "A8224G", "G8239A", "T8243G", "G8276A", "T8281C", "C8291A", "G8317A", "A8338C", "G8356T", "T8375G", "C8382T", "A8386G", "G8393A", "G8407A", "A8409G", "T8440C", "G8446A", "C8460T", "C8488A", "G8490C", "C8491A", "T8505G", "G8506T", "A8522C", "T8651C", "T8678C", "C8715G", "G8717T", "A8750T", "G8772A", "G8808A", "G8846A", "C8869T", "G8893A", "A8898G", "T8932C", "C8951T", "T8971A", "T8973A", "A8977G"], "INT": ["L28I", "I113V", "S119T", "V126M"], "RT-p51": ["T39A", "E40D", "K49R", "E79K", "I135V", "H198P", "E250D", "D335E", "M357L", "M435E"], "RT-p66": ["T39A", "E40D", "K49R", "E79K", "I135V", "H198P", "E250D", "D335E", "M357L", "M435E", "L452I", "R461K", "S468T", "S553R", "S554F", "I556N"], "gp120": ["S3L", "N113-", "-120I", "-121I", "-122S", "-123N", "-124E", "N132T", "E136A", "N157D", "C168R", "N201K", "K224N", "K241E", "R245S", "T255I", "F260L", "N261K", "E262K", "K265Q", "K277Q", "S278G", "R280H", "Q287A", "G291R", "Q300K", "K307G", "Q315H", "S323K", "-326G", "T366R", "-368D", "-381E", "-382N", "-383S", "-384D", "V414I", "N435A", "T436N"], "gp41": ["L4M", "T96N", "Q129N", "N133E", "N160S", "T165S", "V178I", "V187I", "R214K", "D232S", "F241S", "A245I", "D247E", "W286G", "L290S", "G293V", "Q294R", "K297R", "I301V", "T307V", "W314G", "A325T", "L330I"], "nef": ["W5L", "P14S", "K15R", "R22K", "T23A", "V33A", "R35Q", "H40Y", "S49K", "A50H", "C55V", "Q125D", "E144K", "D156N", "P176L", "R184K", "N186D", "I197T"], "p17": ["V7I", "S9R", "A15R", "K28Q", "M31L", "F79Y", "T81A", "V82I", "T84V", "V107A", "T115K", "R123G", "N131T", "Y132S"], "p2": ["N9S"], "p24": ["P1H", "I91V", "A116N", "S120A"], "p6": ["I21M", "D29K", "K31T", "D32K", "K33E"], "p7": ["K3R", "L9P", "V12I", "D48E"], "pro": ["V13I", "N37D", "K43R"], "rev": ["I18T", "P31S", "R50K", "C63Y", "R66G", "V104G", "V109I"], "tat": ["N7K", "A21P", "Y26F", "F32Y", "Q35L", "K40R", "H62N", "P77L", "G79R"], "vif": ["K37N", "R93K", "T155A", "K179Q"], "vpr": ["E6A", "Y15H", "A19T", "N28S", "V46I", "T48S", "N91D", "S94G"], "vpu": ["A7S", "V10I", "Y27F", "K41R"]}, "labels": {"aa": "INT: L28I, I113V, S119T, V126M; RT-p51: T39A, E40D, K49R, E79K, I135V, H198P, E250D, D335E, M357L, M435E; RT-p66: T39A, E40D, K49R, E79K, I135V, H198P, E250D, D335E, M357L, M435E, L452I, R461K, S468T, S553R, S554F, I556N; gp120: S3L, N113-, -120I, -121I, -122S, -123N, -124E, N132T, E136A, N157D, C168R, N201K, K224N, K241E, R245S, T255I, F260L, N261K, E262K, K265Q, K277Q, S278G, R280H, Q287A, G291R, Q300K, K307G, Q315H, S323K, -326G, T366R, -368D, -381E, -382N, -383S, -384D, V414I, N435A, T436N; gp41: L4M, T96N, Q129N, N133E, N160S, T165S, V178I, V187I, R214K, D232S, F241S, A245I, D247E, W286G, L290S, G293V, Q294R, K297R, I301V, T307V, W314G, A325T, L330I; nef: W5L, P14S, K15R, R22K, T23A, V33A, R35Q, H40Y, S49K, A50H, C55V, Q125D, E144K, D156N, P176L, R184K, N186D, I197T; p17: V7I, S9R, A15R, K28Q, M31L, F79Y, T81A, V82I, T84V, V107A, T115K, R123G, N131T, Y132S; p2: N9S; p24: P1H, I91V, A116N, S120A; p6: I21M, D29K, K31T, D32K, K33E; p7: K3R, L9P, V12I, D48E; pro: V13I, N37D, K43R; rev: I18T, P31S, R50K, C63Y, R66G, V104G, V109I; tat: N7K, A21P, Y26F, F32Y, Q35L, K40R, H62N, P77L, G79R; vif: K37N, R93K, T155A, K179Q; vpr: E6A, Y15H, A19T, N28S, V46I, T48S, N91D, S94G; vpu: A7S, V10I, Y27F, K41R"}}}, {"name": "AY588970", "node_attrs": {"div": 0.1603, "accession": "AY588970", "clade_membership": {"value": "CRF19_cpx"}, "country": {"value": "CU"}, "date": {"value": 1999.0}, "Strain_name": {"value": "CU38"}, "LANL_subtype": {"value": "CRF19_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-304A", "-305T", "T309-", "G310-", "G333A", "A334G", "A353G", "T362C", "A388G", "C471G", "A474G", "T531C", "A534G", "G612C", "A613C", "T614A", "C623T", "G659A", "G667A", "A705C", "G740A", "G771T", "G776A", "A806G", "A881G", "C893T", "T902C", "G944C", "C1013T", "G1089T", "A1101G", "A1199G", "T1244C", "A1313G", "A1349G", "G1354C", "G1424A", "A1498G", "A1500G", "G1561A", "A1712-", "C1714A", "G1766A", "C1790T", "C1903A", "A1906G", "G1972A", "C1979A", "A1981C", "T1996C", "G2032A", "T2086C", "C2199G", "A2210T", "A2239C", "G2248A", "C2249A", "G2548A", "A2881T", "A3265G", "A3316G", "C3322T", "T3475C", "G3491A", "T3497C", "G3520A", "T3567C", "A3607G", "A3622G", "G3684A", "C3756G", "G3796A", "A3802C", "C3808A", "A3866G", "C3977T", "C4092G", "C4131G", "C4144T", "A4315G", "C4396T", "T4697G", "T4702G", "T4706C", "A4774G", "A4775T", "A4786G", "A4806C", "C4820T", "G4859A", "G4864C", "G4881A", "A4882C", "G4968C", "A5021G", "A5038G", "G5059A", "A5121G", "T5162C", "C5213G", "G5257A", "A5302G", "C5306T", "T5339C", "C5356T", "G5385A", "C5398T", "G5418A", "T5424C", "T5559C", "G5599A", "G5614T", "G5668A", "T5778G", "C5826T", "C5866A", "A5867G", "C5958G", "A6020T", "T6026C", "A6030G", "A6031C", "-6166T", "-6167C", "-6171A", "-6172T", "-6173A", "-6174T", "-6175C", "-6176A", "-6177C", "-6178T", "-6179G", "-6180A", "-6181C", "-6182A", "-6183T", "-6184A", "-6185A", "-6186A", "-6187G", "-6188C", "-6189A", "-6191C", "A6194C", "-6196A", "-6198A", "-6203G", "-6204G", "-6207A", "-6208C", "-6209A", "-6210T", "-6211A", "-6212T", "-6213C", "-6214T", "-6215G", "-6218G", "-6219C", "-6221C", "-6223A", "A6251G", "G6253A", "A6276C", "C6298T", "G6323A", "A6329G", "-6330C", "A6332T", "-6333C", "T6454C", "G6463A", "A6482G", "G6489A", "C6499T", "C6559T", "A6573G", "T6582C", "C6641A", "A6648G", "C6662A", "A6684C", "-6689G", "G6781A", "T6808C", "C6824T", "-6831A", "-6832A", "A6891C", "G6936C", "G6951C", "-6956A", "A6960G", "-6961C", "-6963G", "-6966C", "-6972G", "-6973T", "-6974G", "-6975G", "-6976C", "-6977C", "-6978A", "-6979G", "-6980G", "-6981A", "-6982G", "-6984A", "-6988G", "-6995G", "-6998A", "-6999C", "-7000G", "-7002C", "G7004-", "A7007-", "C7008-", "T7009-", "C7018T", "G7021C", "A7040G", "T7045C", "C7088A", "T7095G", "T7105G", "A7107G", "T7111A", "T7117C", "A7124G", "C7153T", "A7161C", "-7162A", "A7238G", "A7268-", "A7269-", "A7279G", "C7313T", "G7366A", "G7369A", "C7372T", "A7477G", "A7589G", "A7628G", "G7630T", "C7633A", "A7644G", "A7669G", "A7691G", "A7700C", "A7732C", "T7774C", "C7775T", "A7791G", "A7818G", "G7915A", "A7918G", "C7936T", "A7947G", "A7964G", "C8005G", "A8018G", "G8019C", "A8032T", "C8065T", "A8076G", "C8097T", "C8112T", "C8134G", "G8144A", "A8216G", "G8242T", "A8264T", "A8267G", "C8293T", "G8365A", "G8388T", "G8436C", "T8462C", "A8469G", "G8531A", "A8534G", "G8537T", "A8576T", "A8584T", "C8585T", "G8588A", "G8590C", "G8643A", "C8652A", "A8666G", "A8701T", "C8747T", "C8771T", "G8793A", "G8799A", "T8800C", "T8864G", "C8868A", "A8870G", "A8875G", "G8882A", "C8883T", "G8886A", "G8929A"], "INT": ["Q9H", "D11E", "I31V", "A106G"], "RT-p51": ["T35R", "T39S", "P52T", "M435I"], "RT-p66": ["T35R", "T39S", "P52T", "M435I", "V466I", "S468P", "L491S", "R530K", "S554C"], "gp120": ["D4K", "N5D", "T35R", "I56L", "E59G", "-105D", "-106I", "-107K", "-108H", "-109H", "-110P", "-111N", "-112G", "-114I", "-115S", "-116V", "-117A", "-118Q", "-119E", "M133V", "K141T", "S159A", "K210E", "R212K", "E240G", "V243A", "P263T", "K265R", "K277T", "K307R", "H324Y", "-326E", "H346P", "G361A", "-368N", "-369S", "-370S", "-371T", "-372S", "-373G", "-375E", "-376Q", "-377K", "-379T", "-380E", "-381T", "I396V", "Q412K", "V414G", "C417W", "E418G", "I424V", "K462E", "K472-"], "gp41": ["T96A", "K109D", "D110E", "N114S", "I130V", "N133Q", "E143D", "S157N", "D163G", "K172R", "E215G", "R221G", "S239A", "H258R", "S265L", "T270I", "G281S", "N305D", "I321L", "I322V"], "nef": ["S8N", "V16L", "A32P", "I43V", "S49T", "E64D", "E65G", "Y81F", "G83A", "V101I", "Q104K", "Y120F", "E151K", "V153T", "D174E", "P176T", "K178R", "V182M", "R196K"], "p17": ["K18R", "L46V", "N47D", "S66P", "T67A", "D93P", "S111N", "N124H"], "p24": ["A14S", "E71D", "I124V", "G208A"], "p7": ["K11R", "R32K"], "pro": ["D35E", "I36M", "Q61N"], "rev": ["V15A", "P30S", "K39R", "H53D", "E57G", "T62S", "L73F", "Q96G", "G99E"], "tat": ["T76I", "N80D"], "vif": ["F39C", "K63S", "K67R", "T74P", "R93T", "D99T", "V128L", "K151R", "R158K", "K179E"], "vpr": ["E6G", "P37A", "T84I"], "vpu": ["A3S", "V21I", "S57R"]}, "labels": {"aa": "INT: Q9H, D11E, I31V, A106G; RT-p51: T35R, T39S, P52T, M435I; RT-p66: T35R, T39S, P52T, M435I, V466I, S468P, L491S, R530K, S554C; gp120: D4K, N5D, T35R, I56L, E59G, -105D, -106I, -107K, -108H, -109H, -110P, -111N, -112G, -114I, -115S, -116V, -117A, -118Q, -119E, M133V, K141T, S159A, K210E, R212K, E240G, V243A, P263T, K265R, K277T, K307R, H324Y, -326E, H346P, G361A, -368N, -369S, -370S, -371T, -372S, -373G, -375E, -376Q, -377K, -379T, -380E, -381T, I396V, Q412K, V414G, C417W, E418G, I424V, K462E, K472-; gp41: T96A, K109D, D110E, N114S, I130V, N133Q, E143D, S157N, D163G, K172R, E215G, R221G, S239A, H258R, S265L, T270I, G281S, N305D, I321L, I322V; nef: S8N, V16L, A32P, I43V, S49T, E64D, E65G, Y81F, G83A, V101I, Q104K, Y120F, E151K, V153T, D174E, P176T, K178R, V182M, R196K; p17: K18R, L46V, N47D, S66P, T67A, D93P, S111N, N124H; p24: A14S, E71D, I124V, G208A; p7: K11R, R32K; pro: D35E, I36M, Q61N; rev: V15A, P30S, K39R, H53D, E57G, T62S, L73F, Q96G, G99E; tat: T76I, N80D; vif: F39C, K63S, K67R, T74P, R93T, D99T, V128L, K151R, R158K, K179E; vpr: E6G, P37A, T84I; vpu: A3S, V21I, S57R"}}}]}, {"name": "CRF19_cpx_NODE_0000002", "node_attrs": {"div": 0.12784, "clade_membership": {"value": "CRF19_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["C456T", "A704G", "A1289T", "T2158G", "A2254G", "C2575T", "A2809G", "G3019A", "T3049C", "G3221T", "C3252T", "A3400G", "A3562G", "A3685G", "T4024C", "A4130C", "A4195G", "G4267A", "C4270T", "C4288T", "T4441C", "T4697A", "T4701G", "A4736G", "C4925T", "G5179C", "G5308A", "A5548C", "A5613G", "G5644A", "C5713G", "T5851G", "T5917A", "T6199-", "A6232G", "-6689G", "T6745C", "C6777A", "T6787A", "T6883A", "G6936A", "A6960-", "A6990-", "-7005A", "-7006G", "C7020A", "A7160-", "G7440A", "A7470G", "C7633T", "C7645T", "C7658G", "C7792T", "G8019A", "C8051A", "A8188G", "G8373A", "A8386C", "G8387T", "A8426T", "C8488G", "G8516A", "G8537A", "C8699T", "A8744G", "C8849T", "T8935A", "G8942A"], "INT": ["S119P"], "RT-p51": ["S272P", "A376S", "T386I"], "RT-p66": ["S272P", "A376S", "T386I"], "gp120": ["D21E", "T104H", "N261T", "D294-", "T308K", "G361D", "T436-"], "gp41": ["R46K", "K56R", "Q119E", "T210P", "S239N"], "nef": ["V11I", "K15A", "M198K"], "rev": ["E11D", "A68E", "T114A"], "tat": ["T58P"], "vif": ["F39V"], "vpr": ["E25D"], "vpu": ["V13I", "Q36E", "L82V"]}, "labels": {"aa": "INT: S119P; RT-p51: S272P, A376S, T386I; RT-p66: S272P, A376S, T386I; gp120: D21E, T104H, N261T, D294-, T308K, G361D, T436-; gp41: R46K, K56R, Q119E, T210P, S239N; nef: V11I, K15A, M198K; rev: E11D, A68E, T114A; tat: T58P; vif: F39V; vpr: E25D; vpu: V13I, Q36E, L82V"}}, "children": [{"name": "AY894994", "node_attrs": {"div": 0.14270000000000002, "accession": "AY894994", "clade_membership": {"value": "CRF19_cpx"}, "country": {"value": "CU"}, "date": {"value": 1999.0}, "Strain_name": {"value": "CU7"}, "LANL_subtype": {"value": "CRF19_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G329-", "T341G", "G350A", "G354T", "G401T", "A404C", "A417C", "C471A", "G480A", "A492T", "A562G", "T596C", "A605G", "G607A", "T614G", "C688A", "G716C", "A743C", "C746G", "A797G", "A857G", "G1089T", "A1500G", "C1714A", "G1766T", "G1835A", "G1912A", "A1926G", "G2215T", "A2239C", "A2317G", "G2462A", "A2463G", "T2485C", "A2707G", "G2714C", "G2727A", "T2788G", "C2828T", "A2881G", "A2884G", "A2887G", "C3322T", "C3763T", "T3778C", "C3808A", "A3877G", "A4694C", "G4735A", "A4826C", "G5123A", "T5203C", "C5227A", "A5376G", "G5700A", "A5787C", "T5788A", "C5862T", "A5863T", "A6009G", "T6046G", "A6087C", "A6158G", "C6190-", "A6192-", "C6193-", "A6194-", "A6197-", "A6206-", "G6224-", "G6227C", "A6229C", "G6234A", "A6281C", "A6324G", "A6326G", "A6329-", "T6331-", "A6332-", "T6334-", "A6336-", "T6341-", "A6342-", "T6343-", "G6345A", "A6346G", "C6347A", "A6488C", "A6573G", "A6580G", "G6581A", "T6582C", "A6605G", "C6661A", "A6684C", "C6721T", "T6733A", "A6734-", "T6735-", "A6736-", "A6788G", "T6793C", "A6800G", "G6819C", "A6821G", "G6822T", "A6825T", "T6849G", "A6854G", "C6906G", "C6925T", "T6952A", "T6953-", "G6954-", "G6955-", "A6959-", "T6964-", "A6965-", "T6967-", "A6971-", "A6986-", "A6987-", "G6989-", "C6991-", "A6992-", "C6993-", "A7001-", "T7003A", "A7037G", "A7040G", "A7055-", "G7056A", "A7100C", "G7101A", "G7106A", "C7114T", "A7154-", "A7155-", "C7156-", "A7157-", "A7158-", "T7159-", "A7161-", "A7163-", "T7165-", "G7182C", "A7183T", "A7191G", "G7307A", "T7309G", "T7408C", "C7433T", "T7462G", "A7477C", "A7620C", "A7628G", "G7640A", "G7677A", "A7685C", "G7765A", "C7770G", "A7771C", "T7774G", "C7775T", "G7873A", "A7935G", "C7936A", "C7940-", "A7941-", 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"V153A", "E155K"], "p17": ["V7L", "R22S", "K28Q", "L46I", "G49S", "T53S", "K76R", "R91Q", "D93E", "A118E", "Q127H"], "p24": ["Q4H", "N5K"], "p6": ["A12E"], "pro": ["V13I", "K43R"], "rev": ["P30T", "P31Q", "E32R", "G33A", "T34-", "L73F", "Q96R"], "tat": ["T76D", "R78E", "N80-"], "vif": ["K36N", "R50K", "Q80H"], "vpr": ["D7N", "N91D", "S94G"], "vpu": ["K37R"]}, "labels": {"aa": "INT: D11E; RT-p51: E40D, D123S, E207Q, R211K, T245S; RT-p66: E40D, D123S, E207Q, R211K, T245S; gp120: S3F, N52S, D64E, E78A, N102D, -105M, N113-, E125-, I126-, K143Q, N157G, N158D, S159-, Y163-, R164K, L165I, E240G, V243T, N251D, K277T, N311K, K312E, K316E, R322T, S323V, H324L, I332S, T334A, A351G, T366R, W367-, R401-, R416Q, E418K, N434-, N435-, N437-, G443A, D446G; gp41: V2M, H53Q, M54L, K106T, D113N, S125N, T128P, A156G, S157K, L209-, P210L, H211T, H212R, Q213H, E215G, R231K, R276H, L277S, N302S, V318A, C326W, I329V; nef: T23A, E28D, S49R, E64A, V85L, L100I, Q125H, E151K, V153A, E155K; p17: V7L, R22S, K28Q, L46I, G49S, T53S, K76R, R91Q, D93E, A118E, Q127H; p24: Q4H, N5K; p6: A12E; pro: V13I, K43R; rev: P30T, P31Q, E32R, G33A, T34-, L73F, Q96R; tat: T76D, R78E, N80-; vif: K36N, R50K, Q80H; vpr: D7N, N91D, S94G; vpu: K37R"}}}, {"name": "CRF19_cpx_NODE_0000003", "node_attrs": {"div": 0.15328, "clade_membership": {"value": "CRF19_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A159G", "-167A", "C207T", "T213G", "T214A", "-217A", "G256A", "A261G", "A265G", "-280G", "-304A", "A353G", "A356G", "A426C", "G452A", "C510G", "G542A", "G579A", "G608A", "T614C", "G615A", "T662A", "T789C", "G818A", "C827T", "G860A", "G989A", "T1003A", "G1005C", "C1136T", "C1235T", "T1421C", "A1475G", "C1491A", "A1496G", "T1501C", "T1505C", "A1588G", "G1595A", "A1619G", "C1692A", "C1826A", "T1868C", "T1996C", "A2038C", "C2199T", "A2293G", "G2305A", "A2350G", "G2459A", "C2464A", "C2488T", "T2494C", "T2497C", "A2512G", "T2520C", "C2533T", "A2693G", "C2829A", "G2833A", "T2863C", "G2925A", "C2930T", "C2960T", "C2975A", 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"P294A", "K451R", "Q524L"], "gp120": ["T23V", "Q54R", "E59A", "D64N", "H77Q", "N102S", "-114N", "-115N", "-116P", "-117A", "-122A", "E136V", "K141T", "Y145H", "-160T", "-161E", "-162Q", "E204D", "F289Y", "A291T", "T292S", "G293N", "-294I", "N311E", "Q315K", "K319E", "R322Q", "L341P", "T366N", "-368T", "-376T", "-377I", "-378N", "-379N", "-380T", "-381D", "P389K", "N437S", "T471S", "K472R", "K474R", "E479Q"], "gp41": ["L4I", "N166S", "E220G", "G225E", "V238L", "L244I", "T298A", "W314G", "R324I", "C326G", "L340F"], "nef": ["S8R", "I10R", "I11T", "G12E", "R22K", "E24D", "A50T", "E152K", "D156E", "M173V"], "p17": ["M31L", "Q59E", "V82I", "V94I", "N109K"], "p24": ["I91N", "A92P", "S120A"], "p6": ["P5T"], "p7": ["L9I", "V12T", "K41R"], "pro": ["L10I"], "rev": ["I18T", "Y28S", "S54K", "S56A", "T62D", "S107P", "N116S"], "tat": ["N7K", "T24S", "K29R", "L74F", "K85E"], "vif": ["M29K", "A35T", "K36E", "R47N", "I98V", "L109M", "L124I", "V128I", "R132K", "S159N", "R167S", "*193W"], "vpr": ["P93S"], "vpu": ["A8S", "V21I", "E40Q"]}, "labels": {"aa": "INT: S17N; RT-p51: T35I, E122K, D123E, I142T, T200A, T245K, R277K, P294A; RT-p66: T35I, E122K, D123E, I142T, T200A, T245K, R277K, P294A, K451R, Q524L; gp120: T23V, Q54R, E59A, D64N, H77Q, N102S, -114N, -115N, -116P, -117A, -122A, E136V, K141T, Y145H, -160T, -161E, -162Q, E204D, F289Y, A291T, T292S, G293N, -294I, N311E, Q315K, K319E, R322Q, L341P, T366N, -368T, -376T, -377I, -378N, -379N, -380T, -381D, P389K, N437S, T471S, K472R, K474R, E479Q; gp41: L4I, N166S, E220G, G225E, V238L, L244I, T298A, W314G, R324I, C326G, L340F; nef: S8R, I10R, I11T, G12E, R22K, E24D, A50T, E152K, D156E, M173V; p17: M31L, Q59E, V82I, V94I, N109K; p24: I91N, A92P, S120A; p6: P5T; p7: L9I, V12T, K41R; pro: L10I; rev: I18T, Y28S, S54K, S56A, T62D, S107P, N116S; tat: N7K, T24S, K29R, L74F, K85E; vif: M29K, A35T, K36E, R47N, I98V, L109M, L124I, V128I, R132K, S159N, R167S, *193W; vpr: P93S; vpu: A8S, V21I, E40Q"}}, "children": [{"name": "KU685582", "node_attrs": {"div": 0.16872, "accession": "KU685582", "clade_membership": {"value": "CRF19_cpx"}, "country": {"value": "ES"}, "date": {"value": 2014.0}, "Strain_name": {"value": "EUR_0041"}, "LANL_subtype": {"value": "CRF19_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-305T", "G361C", "C471A", "G480T", "C590A", "C606A", "C794T", "T858C", "C926T", "A980G", "T992G", "C1008G", "T1271G", "A1278C", "A1433G", "G1472A", "G1664A", "A1673G", "G1687A", "A1762C", "C1853T", "A1907G", "A1920G", "T2063A", "T2124C", "A2290G", "T2335A", "T2443C", "A2464G", "A2569T", "G2728A", "A2830T", "A2839C", "A2845C", "T2908C", "A2975G", "A3096C", "A3103G", "A3164T", "T3165C", "G3166C", "A3196G", "T3550C", "C3577T", "G3631A", "G3791A", "C4140T", "G4178A", "C4381T", "T4435C", "C4441A", "T4640C", "C4800T", "G4856A", "T4883C", "C5115T", "G5123A", "G5128A", "C5133T", "A5155G", "A5166C", "T5209C", "T5221G", "A5223T", "C5251T", "G5375A", "A5594G", "A5622G", "T5624C", "G5717A", "G5775A", "T5806C", "G5948A", "A6023C", "T6151C", 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"A325V"], "nef": ["E64A", "E93D", "E155K", "N161T", "P176S"], "p17": ["S9T", "L46I", "G49C"], "p24": ["H87Q", "P93A", "D180E", "N183H"], "p6": ["S3N", "Q28P", "D29E"], "pro": ["N37D", "K41R", "L89M"], "rev": ["P72S"], "vif": ["P177S", "R181K", "H183Y", "N190S"], "vpr": ["A4V", "D7N", "P10L", "E21A", "H40L"], "vpu": ["I6T"]}, "labels": {"aa": "INT: D6N, T122I, V135I, N222K; RT-p51: V10A, K245H, E248D, E250D, Q334P, M357S; RT-p66: V10A, K245H, E248D, E250D, Q334P, M357S; gp120: A32T, N57H, -105N, -106V, -107N, -108V, -109I, -110N, -111N, -112T, N113R, -123L, -124A, I126M, K127R, V136I, N157D, D202E, K241N, E247K, N272S, N273K, N274-, T275-, R276-, S278M, V279I, -282R, -283T, P285I, Q287P, V288G, Y289R, Y290V, S292D, N293T, I294L, I295T, H302R, K308R, K312N, -327N, I332T, -369T, -370D, -371K, -372I, -373S, -374N, -375W, N379S, -382T, -383M, -384S, T385N, I395V, P412E, -436S, R472M; gp41: L34M, A189T, I301V, A325V; nef: E64A, E93D, E155K, N161T, P176S; p17: S9T, L46I, G49C; p24: H87Q, P93A, D180E, N183H; p6: S3N, Q28P, D29E; pro: N37D, K41R, L89M; rev: P72S; vif: P177S, R181K, H183Y, N190S; vpr: A4V, D7N, P10L, E21A, H40L; vpu: I6T"}}}, {"name": "KU685581", "node_attrs": {"div": 0.16999999999999998, "accession": "KU685581", "clade_membership": {"value": "CRF19_cpx"}, "country": {"value": "ES"}, "date": {"value": 2014.0}, "Strain_name": {"value": "EUR_0040"}, "LANL_subtype": {"value": "CRF19_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-305A", "A386G", "A511G", "A513C", "A562G", "A599C", "C700A", "A702G", "T897C", "G998A", "G1268A", "G1354C", "G1475T", "T1481A", "A1493G", "T1547C", "T1574C", "A1642G", "C1706T", "G1766T", "A1867G", "A1906G", "A1982G", "G2005A", "A2122C", "A2332G", "T2434C", "T2458C", "T2521C", "T2803C", "C2828A", "A2846T", "G2878A", "A3010G", "C3100A", "G3170A", "A3292G", "A3391G", "A3409G", "G3491A", "A3595G", "A3630G", "A3739G", "T3793G", "A3877G", "C3892T", "G3916A", "G4642A", "A4697C", "G4855A", "A4900G", "G5059A", "A5143G", "C5168T", "C5451T", 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N5K, I9M; pro: I36M, I62V; rev: V15I, G113R; tat: S61N; vif: R19K, K37N, R90K, Q105R, R158K, N186S; vpu: Q2K, A3G, K37R, R47S"}}}]}]}]}]}, {"name": "NODE_0000808", "node_attrs": {"div": 0.08067, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A303T", "G452A", "G458A", "A653G", "-711A", "-717G", "C773T", "G785A", "A810G", "C823G", "C827T", "G829A", "T851C", "C872T", "T926A", "C974T", "T983C", "A1002C", "T1003A", "A1127G", "C1175T", "T1253G", "G1256A", "G1301A", "T1316C", "C1350A", "T1385C", "G1424A", "-1452G", "-1455G", "-1456G", "-1457T", "A1458-", "C1460-", "G1972A", "C2149A", "C2615A", "A2929G", "C2941A", "A2969G", "C2978T", "C3013T", "A3031C", "G3094A", "A3162G", "C3178T", "G3379A", "A3409G", "C3545T", "T3550C", "G3718A", "T3757A", "T4135C", "A4175G", "G5059A", "G5099A", "A5272G", "C5333T", "T5357A", "A5453T", "A5712G", "T5739A", "C5769A", "T5781G", "A5787C", "T5791-", "C5792A", "C5793T", "A5794G", "C5795A", "G5811-", "C5878T", "T5944C", "C6007T", 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N267T, T269I, T292R, K312N, K316Q, K319Q, Q320K, F325W, I343L, -374T, -379N, -380T, -381N, V414I, N435S; gp41: N133E, V194I, N302T, T306A, C326G; nef: H89F, Y120F, I133V, T138C, A151R, A156N, T157N, I168M, C169S, R188S, L191R, K192R, F202Y; p2: N9H; p24: I27V, A31G, S33N, I91H, P207T; rev: S8T, I102V, S103L, S107P, V108G, S112T; tat: Y26F; vif: R158K; vpu: E5Q, K37R, D44E, D58E, E60D, L61T, S62D, T63E, M65A, G68-, -69V, -70E, -71M, -72G, -74F, -75D"}}, "children": [{"name": "results/subtype_trees/CRF36_cpx.nwk", "node_attrs": {"div": 0.11187, "clade_membership": {"value": "CRF36_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T30G", "G31C", "A97C", "-161T", "-215A", "-216A", "-217T", "A222G", "T227A", "A263G", "A492T", "A500G", "A606C", "A654T", "A661G", "G665C", "-714A", "-716A", "T734C", "G1019A", "G1078C", "A1089C", "G1090A", "G1109A", "C1247T", "C1280T", "T1439C", "G1476A", "A1486G", "G1493A", "G1498C", "T1502A", "G1619A", "A1657G", "G1697A", "G1720A", "A1742G", "A1743T", "-1756A", 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"N261V", "S278G", "G293-", "Q300K", "A318V", "T344I", "-370N", "-376G", "-377L", "R391K", "P412A", "K462Q", "K472R"], "gp41": ["M54L", "V72L", "S107T", "D110S", "K122R", "D129Q", "S192N", "I193V", "H211R", "S239N", "I309V", "I321V", "H331N", "F340L"], "nef": ["V16I", "E18D", "I20M", "E28I", "Q35R", "K39R", "E64G", "Y102H", "E108D", "E154T", "N156H", "E158T", "N161D", "N162S", "E174D", "D175N", "E176T"], "p17": ["T53S", "I107L", "N109S", "K110N"], "p24": ["M96I", "G116A", "S120H"], "p6": ["S14N", "I21M", "T22S", "P25-", "-26Q", "Q30P", "E34G", "A39T", "S51L"], "p7": ["G4S", "R11T"], "pro": ["K14R", "K20I", "V82I"], "rev": ["T8A", "A15V", "I18T", "P31S", "S54A", "S67F", "A68E"], "tat": ["L8I", "T19R", "Q54R", "N67D", "P70S", "T76A", "T77I"], "vif": ["K34Q", "G37D", "V66I", "R90K", "K92R", "R93K", "E134D", "Q136P", "T159R", "R167K", "P187R", "T188S"], "vpr": ["Y15F"], "vpu": ["P3S", "F27L", "R31K", "K35R"]}, "labels": {"aa": "INT: V72I, L74I, D270N; RT-p51: T11A, K104R, E122K, S162A, D248E, V365I, V375I, T386I, R390K, A400T; RT-p66: T11A, K104R, E122K, S162A, D248E, V365I, V375I, T386I, R390K, A400T, E529D, S554K, V559I; gp120: N57D, N102E, T104Q, -111N, -117N, -118M, -124G, Y145H, K150R, N159D, E204Q, E240N, I242T, V258I, N261V, S278G, G293-, Q300K, A318V, T344I, -370N, -376G, -377L, R391K, P412A, K462Q, K472R; gp41: M54L, V72L, S107T, D110S, K122R, D129Q, S192N, I193V, H211R, S239N, I309V, I321V, H331N, F340L; nef: V16I, E18D, I20M, E28I, Q35R, K39R, E64G, Y102H, E108D, E154T, N156H, E158T, N161D, N162S, E174D, D175N, E176T; p17: T53S, I107L, N109S, K110N; p24: M96I, G116A, S120H; p6: S14N, I21M, T22S, P25-, -26Q, Q30P, E34G, A39T, S51L; p7: G4S, R11T; pro: K14R, K20I, V82I; rev: T8A, A15V, I18T, P31S, S54A, S67F, A68E; tat: L8I, T19R, Q54R, N67D, P70S, T76A, T77I; vif: K34Q, G37D, V66I, R90K, K92R, R93K, E134D, Q136P, T159R, R167K, P187R, T188S; vpr: Y15F; vpu: P3S, F27L, R31K, K35R", "clade": "CRF36_cpx"}}, "children": [{"name": "EF087995", "node_attrs": {"div": 0.14268, "accession": "EF087995", "clade_membership": {"value": "CRF36_cpx"}, "country": {"value": "CM"}, "date": {"value": 2000.0}, "Strain_name": {"value": "00CMNYU1162"}, "LANL_subtype": {"value": "CRF36_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A660G", "G687A", "G770A", "G771C", "T788G", "A829G", "T992G", "A1034G", "A1041G", "C1060A", "G1443A", "T1451G", "G1452A", "A1493G", "G1552A", "T1559C", "A1600G", "T1676C", "C1692T", "T1741C", "T1743C", "C1767A", "A1770G", "G2056A", "G2074A", "G2126A", "A2149G", "C2199A", "G2248A", "C2356T", "T2369C", "C2613T", "T2735C", "A2846C", "C2848T", "T2860G", "A2868C", "G2869T", "G2876T", "T2877G", "G2902A", "A2925G", "G2969A", "G3010A", "G3019A", "G3168A", "A3188C", "T3189A", "A3190T", "A3230G", "A3272T", "A3276C", "T3345A", "A3347T", "A3408G", "C3411G", "T3412G", "C3415T", "A3430C", "C3432G", "A3441C", "A3443G", "C3444T", "A3446C", "C3449A", "A3460C", "C3471T", "G3473A", "A3482G", "A3484G", "A3487G", "C3500T", "A3503T", "A3507G", "A3509G", "C3510A", "A3516T", "T3517A", "C3518T", "A3519T", "C3525T", "T3526A", "C3533T", "A3534C", "A3547T", "G3548A", "A3555T", "C3567T", "G3572T", "G3581A", "A3588G", "C3589G", "T3590G", "A3592T", "A3666G", "G3674A", "C3688T", "A3690T", "T3693C", "T3698C", "T3721G", "A3741G", "A3743C", "T3787C", "C3798T", "C3808A", "C3821T", "C3892G", "C4015T", "G4063T", "A4093G", "A4107C", "A4122T", "A4124T", "G4131T", "C4140T", "C4146T", "A4156G", "T4165G", "G4171T", "C4181A", "C4184T", "A4185C", "T4192A", "C4199T", "C4201A", "T4240A", "A4246G", "A4577C", "A4583C", "A4596G", "G4597T", "G4642T", "G4654T", "G4659A", "A4685T", "C4803A", "T4826G", "G4831T", "G4838A", "A4858G", "G4859A", "G4870C", "A4872T", "T4886G", "G4893T", "G4896A", "G4923A", "A4934G", "G4975C", "A4994T", "G5013A", "A5059G", "G5087A", "G5097C", "G5100T", "G5120A", "A5150G", "G5165C", "A5277G", "G5296A", "C5445T", "T5451C", "T5484A", "A5525G", "C5611A", "A5613T", "T5614C", "C5615A", "G5644A", "T5708G", "C5797-", "T5798-", "T5799-", "G5800T", "A5804C", "A5805C", "C5806T", "G5808A", "-5809C", "-5810T", "-5811C", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824G", "-5866C", "A5867-", "A5868-", "C5869-", "G5907A", "A5916C", "C5989T", "A6130C", "G6160A", "T6163-", "A6176-", "T6181-", "A6182-", "C6184T", "A6185C", "T6187G", "G6189A", "A6191T", "A6192T", "-6195C", "-6196C", "-6207A", "-6208C", "A6210T", "-6212T", "-6213C", "-6214T", "-6215G", "-6216A", "-6217T", "-6218G", "-6219A", "-6221A", "-6222G", "-6223T", "A6282G", "G6303A", "G6323A", "G6329A", "A6330G", "G6339A", "C6464T", "A6465C", "T6574C", "C6601T", "A6622G", "A6668G", "A6669G", "T6676C", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "G6731A", "T6735A", "A6736T", "G6741T", "G6742A", "C6758T", "A6771G", "G6773A", "G6779A", "A6812G", "A6813C", "-6824C", "T6923A", "A6926G", "C6938A", "A6963G", "A6966C", "A6968T", "C6970G", "-6973T", "-6975A", "-6976C", "-6977A", "-6978A", "T6984C", "-7000A", "C7008A", "T7015A", "A7026G", "A7037G", "A7152C", "A7155G", "G7276A", "C7576T", "A7641G", "A7701G", "G7702A", "A7705G", "C7747T", "T7843C", "G7924C", "C8005A", "A8011C", "C8037T", "A8130G", "C8146T", "T8172C", "C8213G", "A8222G", "A8288G", "G8317A", "G8329A", "A8378G", "T8456A", "-8487C", "A8490G", "T8504G", "G8537T", "G8558T", "A8564C", "A8586C", "G8590C", "T8594C", "T8600C", "A8604G", "C8651T", "A8656G", "T8666G", "C8702A", "C8720A"], "INT": ["A8V", "D11E", "H16Y", "S39R", "E96D", "K111T", "D116V", "N117Y", "S119I", "T122I", "A124V", "C130W", "W132C", "Q136K", "Q137S", "F139L", "P142S", "N155K", "I268L", "N270H", "Q274R"], "RT-p51": ["A11T", "T35K", "T173I", "F214L", "S251R", "N255K", "Q258P", "V261W", "K277R", "V292I", "R358K", "I365H", "S379G", "I393L", "Q394P", "V417D", "N418Y", "E438G", "T439R"], "RT-p66": ["A11T", "T35K", "T173I", "F214L", "S251R", "N255K", "Q258P", "V261W", "K277R", "V292I", "R358K", "I365H", "S379G", "I393L", "Q394P", "V417D", "N418Y", "E438G", "T439R", "A446G", "E449A", "T450V", "K451Q", "L452I", "T459I", "D460N", "R463G", "T470S", "E471G", "T472E", "N474I", "Q475L", "T477I", "H480S", "L484F", "A485T", "Q487L", "S491L", "V493L", "V496I", "D498G", "S499A", "K524R", "E527K", "Y532F", "L533P", "W535R", "I542M", "D549G", "K550Q"], "gp120": ["D21A", "-112F", "N113T", "-114S", "-115S", "-116G", "-119S", "-120D", "-121D", "-122L", "-123S", "K143R", "R150K", "D157N", "N158A", "D159E", "Q204S", "I256M", "N272G", "-293N", "D294N", "H302Y", "E309K", "N312E", "K320A", "C357S", "N358D", "L362M", "-368D", "N370S", "-372W", "-373S", "T374M", "-375T", "L377S", "-384D", "T385N", "K391R", "I395V", "N433T", "N434S"], "gp41": ["K77R", "D113G", "Q129E", "E133G", "Q207H", "A245V", "L277N", "V290A", "L304V", "T307A", "I329V"], "nef": ["D38E", "S49P", "D54E", "E65D", "K82Q", "G83A", "S88G", "K105R", "D108E", "F120L", "N126K"], "p17": ["S109G", "A118T"], "p2": ["V7I", "H9Q", "-10T", "A11G"], "p24": ["A14P", "N33S", "H87Q", "I104V", "T110N"], "p6": ["P5S", "M21T", "S22P", "P30T", "R31G"], "p7": ["R29K", "Q45R"], "rev": ["R4G", "R53S", "I55L", "P100S"], "tat": ["K50R"], "vif": ["R4V", "R19I", "S23I", "V25I", "K33N", "H73N", "H80Q", "G82V", "Q91R", "S95T", "T96S", "A103S", "D104N", "D113N", "R130T", "P136H", "G143R", "K158R", "E171Q", "D172Y", "*193Y"], "vpr": ["E6K", "N16D", "E21Q", "E58G"], "vpu": ["Q2N", "S3H", "V13I", "E66L", "-73D"]}, "labels": {"aa": "INT: A8V, D11E, H16Y, S39R, E96D, K111T, D116V, N117Y, S119I, T122I, A124V, C130W, W132C, Q136K, Q137S, F139L, P142S, N155K, I268L, N270H, Q274R; RT-p51: A11T, T35K, T173I, F214L, S251R, N255K, Q258P, V261W, K277R, V292I, R358K, I365H, S379G, I393L, Q394P, V417D, N418Y, E438G, T439R; RT-p66: A11T, T35K, T173I, F214L, S251R, N255K, Q258P, V261W, K277R, V292I, R358K, I365H, S379G, I393L, Q394P, V417D, N418Y, E438G, T439R, A446G, E449A, T450V, K451Q, L452I, T459I, D460N, R463G, T470S, E471G, T472E, N474I, Q475L, T477I, H480S, L484F, A485T, Q487L, S491L, V493L, V496I, D498G, S499A, K524R, E527K, Y532F, L533P, W535R, I542M, D549G, K550Q; gp120: D21A, -112F, N113T, -114S, -115S, -116G, -119S, -120D, -121D, -122L, -123S, K143R, R150K, D157N, N158A, D159E, Q204S, I256M, N272G, -293N, D294N, H302Y, E309K, N312E, K320A, C357S, N358D, L362M, -368D, N370S, -372W, -373S, T374M, -375T, L377S, -384D, T385N, K391R, I395V, N433T, N434S; gp41: K77R, D113G, Q129E, E133G, Q207H, A245V, L277N, V290A, L304V, T307A, I329V; nef: D38E, S49P, D54E, E65D, K82Q, G83A, S88G, K105R, D108E, F120L, N126K; p17: S109G, A118T; p2: V7I, H9Q, -10T, A11G; p24: A14P, N33S, H87Q, I104V, T110N; p6: P5S, M21T, S22P, P30T, R31G; p7: R29K, Q45R; rev: R4G, R53S, I55L, P100S; tat: K50R; vif: R4V, R19I, S23I, V25I, K33N, H73N, H80Q, G82V, Q91R, S95T, T96S, A103S, D104N, D113N, R130T, P136H, G143R, K158R, E171Q, D172Y, *193Y; vpr: E6K, N16D, E21Q, E58G; vpu: Q2N, S3H, V13I, E66L, -73D"}}}, {"name": "CRF36_cpx_NODE_0000001", "node_attrs": {"div": 0.11229, "clade_membership": {"value": "CRF36_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["A2728T", "A4993C", "A6790C", "T7045G", "T7150A", "G7688C"], "RT-p51": ["K211N"], "RT-p66": ["K211N"], "gp120": ["-105N", "-106F", "S306N", "T371N"], "p2": ["-12G"]}, "labels": {"aa": "RT-p51: K211N; RT-p66: K211N; gp120: -105N, -106F, S306N, T371N; p2: -12G"}}, "children": [{"name": "KR017774", "node_attrs": {"div": 0.14268, "accession": "KR017774", "clade_membership": {"value": "CRF36_cpx"}, "country": {"value": "CM"}, "date": {"value": 2007.0}, "Strain_name": {"value": "BS40"}, "LANL_subtype": {"value": "CRF36_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G35-", "C36-", "T37-", "C38-", "T39-", "C40-", "T41-", "G42-", "G43-", "C44-", "T45-", "A46-", "G47-", "C48-", "A50-", "G51-", "G52-", "G53-", "A54-", "A55-", "C56-", "C57-", "C58-", "A59-", "C60-", "T61-", "G62-", "C63-", "T64-", "T65-", "A66-", "A67-", "G68-", "C69-", "C70-", "T71-", "C72-", "A73-", "A74-", "T75-", "A76-", "A77-", "A78-", "G79-", "C80-", "T81-", "T82-", "G83-", "C84-", "C85-", "T86-", "T87-", "G88-", "A89-", "G90-", "T91-", "G92-", "C93-", "T94-", "A418G", "A419G", "A426C", "C471A", "G500A", "A576G", "T662G", "C665A", "A676G", "C731T", "G770A", "G803A", "C902T", "A968T", "G978A", "T979C", "C1091T", "A1092G", "T1100C", "T1166C", "C1235T", "G1253A", "A1267G", "G1271A", "A1278G", "A1279G", "A1364G", "A1476G", "G1486A", "A1567G", "G1657A", "T1676C", "T1724G", "A1770G", "A1793G", "C1873T", "A1907G", "G2002A", "A2007G", "C2105T", "A2149G", "A2176G", "C2195T", "C2269T", "A2332G", "T2393C", "G2406A", "A2419G", "G2428A", "G2462A", "A2498G", "C2533T", "C2596T", "T2597C", "A2629G", "T2654C", "G2686A", "G2707A", "C2740T", "A2752G", "C2822T", "C2848T", "A2937G", "T3059A", "A3080T", "A3094G", "A3103G", "T3118C", "C3140T", "G3221A", "A3292G", "G3398A", "T3412C", "G3442A", "G3508A", "T3566C", "C3628T", "A3655G", "G3664A", "G3667A", "A3756G", "G3766A", "G3802A", "G3816A", "A3817G", "C3826T", "G3871A", "C4015A", "G4060A", "T4129C", "T4153C", "G4186A", "A4455T", "A4498G", "G4539A", "T4540C", "G4664A", "A4693C", "A4696G", "C4761T", "G4764A", "G4778A", "C4937A", "A4951C", "C4954T", "T4957C", "G4986A", "T4991C", "G4995T", "G5036A", "A5048C", "G5062T", "A5086G", "A5154C", "A5176C", "C5221T", "G5375A", "C5397A", "T5476-", "C5496A", "A5535T", "G5537A", "G5558A", "T5562C", "T5584C", "T5616C", "A5622T", "C5655T", "C5660T", "G5668A", "A5689C", "A5707G", "G5725A", "C5727T", "G5729A", "G5775A", "T5799G", "T5801C", "G5802A", "G5803A", "G5808T", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824A", "G5864-", "A5865-", "G5907A", "C5923T", "C5974A", "G6023A", "-6164C", "-6165A", "-6166T", "-6167A", "-6168A", "-6169C", "-6170T", "-6171T", "-6172C", "-6173A", "-6174A", "-6175C", "-6177G", "-6178C", "-6179A", "-6180C", "-6183G", "A6192C", "A6194-", "A6197-", "C6199T", "C6202A", "-6207G", "-6208A", "G6211T", "-6221A", "-6222A", "-6223G", "G6225A", "T6250C", "C6263A", "G6280T", "C6318A", "A6327G", "G6333A", "G6336C", "G6339C", "G6340A", "T6373G", "G6403C", "C6427T", "G6451A", "A6489C", "C6496T", "A6576G", "C6613A", "A6620C", "A6626G", "T6636C", "C6637T", "A6639G", "G6640T", "A6649G", "A6668G", "A6669G", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6721T", "G6725T", "G6743A", "C6758T", "A6781T", "G6788A", "C6797A", "C6809G", "A6810G", "A6821G", "-6824T", "T6885C", "G6905A", "G6956T", "C6964T", "G6969C", "A6972T", "-6973G", "-6975C", "-7000A", "G7004A", "T7015A", "A7044G", "G7056A", "A7094G", "T7095A", "C7124A", "A7148C", "A7151G", "T7153A", "G7232A", "G7244A", "G7258A", "G7269C", "G7366A", "A7389G", "A7426C", "G7428A", "G7440A", "A7470G", "G7533A", "A7590C", "T7606C", "T7630A", "G7640A", "A7642T", "C7658G", "A7676G", "G7677A", "G7690C", "C7742A", "A7743G", "G7759A", "C7770A", "A7771C", "C7792T", "G7868A", "G7880A", "T7912C", "A7931C", "T7939C", "A7964G", "C8009A", "T8047C", "T8048C", "G8134C", "T8156C", "A8173G", "A8222G", "C8223T", "G8264A", "C8277T", "T8290C", "G8329A", "C8366T", "G8373C", "T8374C", "T8384G", "A8424C", "T8425C", "A8474C", "-8487T", "T8505C", "C8514G", "A8531G", "G8533A", "T8567C", "C8568T", "A8588G", "G8590C", "A8655C", "C8675T", "C8688A", "A8717C", "C8727T"], "INT": ["R14K", "Y227F", "S255N"], "RT-p51": ["P4S", "R104K", "D123N", "I135V", "I178M", "P243S", "K281R", "S322T", "I329L", "A376T", "V435I"], "RT-p66": ["P4S", "R104K", "D123N", "I135V", "I178M", "P243S", "K281R", "S322T", "I329L", "A376T", "V435I", "S491P", "K554R"], "gp120": ["D4N", "D57N", "Q104H", "-112S", "N113T", "-123K", "G124E", "L137I", "Q142H", "P155Q", "N158A", "N161T", "S162T", "I173M", "E183D", "K212T", "E241G", "I256L", "I258V", "V261A", "K262S", "N272G", "A291S", "-293D", "D297N", "H302Y", "K307E", "E309D", "Q315K", "Q319G", "K323E", "H324Y", "I344T", "G351R", "-368Y", "-372T", "-373M", "-382N", "N397R", "R401K", "I414E", "L424I", "N432Q", "N433E", "V460I", "E464K", "R472P"], "gp41": ["Q29R", "I37T", "R46K", "K56R", "N96T", "D109E", "D113N", "Q119E", "S125D", "Q129H", "Q147R", "A156D", "A189T", "V193I", "T210P", "R221G", "T307V", "V321I", "A325V"], "nef": ["V11P", "I28P", "A50T", "C55R", "L58V", "G64E", "G83A", "K105Q", "H116N", "Q125H", "P129S", "G159R", "M173I"], "p1": ["S9N"], "p17": ["K28R", "M31L", "L46I", "T81A", "S109R", "N110K", "K114R"], "p24": ["E79D", "V83T", "N121D", "Q179R", "N183G"], "p6": ["F15L", "R31G"], "p7": ["S4G", "R7K", "K34R"], "pro": ["N37D", "K70R"], "rev": ["D7V", "A8T", "V15I", "V16A", "Y28S", "S31P", "K39R", "A54E", "F67P", "G96Q", "L103P", "I109V"], "tat": ["N7K", "C34-"], "vif": ["K36T", "D37G", "G60R", "D117E", "K122T", "A123V", "I124T", "D134N", "A137S", "R159I", "K167R", "N190H"], "vpr": ["E17A", "E24D"], "vpu": ["Q5H", "A18V", "V21I", "I28L", "R34V", "D40N", "R41K", "E66K", "-73N"]}, "labels": {"aa": "INT: R14K, Y227F, S255N; RT-p51: P4S, R104K, D123N, I135V, I178M, P243S, K281R, S322T, I329L, A376T, V435I; RT-p66: P4S, R104K, D123N, I135V, I178M, P243S, K281R, S322T, I329L, A376T, V435I, S491P, K554R; gp120: D4N, D57N, Q104H, -112S, N113T, -123K, G124E, L137I, Q142H, P155Q, N158A, N161T, S162T, I173M, E183D, K212T, E241G, I256L, I258V, V261A, K262S, N272G, A291S, -293D, D297N, H302Y, K307E, E309D, Q315K, Q319G, K323E, H324Y, I344T, G351R, -368Y, -372T, -373M, -382N, N397R, R401K, I414E, L424I, N432Q, N433E, V460I, E464K, R472P; gp41: Q29R, I37T, R46K, K56R, N96T, D109E, D113N, Q119E, S125D, Q129H, Q147R, A156D, A189T, V193I, T210P, R221G, T307V, V321I, A325V; nef: V11P, I28P, A50T, C55R, L58V, G64E, G83A, K105Q, H116N, Q125H, P129S, G159R, M173I; p1: S9N; p17: K28R, M31L, L46I, T81A, S109R, N110K, K114R; p24: E79D, V83T, N121D, Q179R, N183G; p6: F15L, R31G; p7: S4G, R7K, K34R; pro: N37D, K70R; rev: D7V, A8T, V15I, V16A, Y28S, S31P, K39R, A54E, F67P, G96Q, L103P, I109V; tat: N7K, C34-; vif: K36T, D37G, G60R, D117E, K122T, A123V, I124T, D134N, A137S, R159I, K167R, N190H; vpr: E17A, E24D; vpu: Q5H, A18V, V21I, I28L, R34V, D40N, R41K, E66K, -73N"}}}, {"name": "EF087994", "node_attrs": {"div": 0.13068, "accession": "EF087994", "clade_membership": {"value": "CRF36_cpx"}, "country": {"value": "CM"}, "date": {"value": 2000.0}, "Strain_name": {"value": "00CMNYU830"}, "LANL_subtype": {"value": "CRF36_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "C456T", "C471G", "A474G", "T525C", "T531C", "T571A", "G651A", "A715C", "A724G", "A774T", "A866G", "G1048A", "C1089A", "C1103T", "G1271T", "A1412G", "G1469A", "G1508A", "A1526G", "G1730A", "-1746T", "-1747C", "-1748T", "T1749-", "C1750-", "C1751-", "C1767T", "A1849G", "C1853T", "T1986C", "A2051G", "A2210G", "G2224A", "A2286G", "T2479C", "T2672C", "G2714A", "G2847A", "T2856G", "A2875G", "G2878A", "C2953A", "T2968A", "C3095G", "A3208G", "C3294T", "A3364G", "C3475T", "G3490A", "G3569A", "C3682T", "C3808T", "A3973C", "C4043T", "A4076C", "T4153G", "G4273A", "A4312G", "T4674C", "G4677A", "C4686A", "A4687C", "T4868C", "G4968A", "A4976C", "A5033G", "T5152C", "C5237T", "A5287G", "T5333C", "C5384T", "T5466C", "A5548G", "T5636C", "T5669G", "T5672G", "G5700A", "G5717A", "G5747A", "G5758A", "T5778C", "C5787A", "A5788T", "C5789T", "A5790G", "G5791T", "A5792C", "G5794A", "A5795C", "C5806A", "-5809G", "-5810G", "-5811G", "C5834A", "-5866C", "A5867T", "A5868T", "C5869G", "G5915A", "C5924T", "A6043G", "T6151A", "-6173C", "-6174A", "-6175G", "-6177A", "-6178C", "-6179T", "-6180T", "-6183A", "A6185G", "A6186G", "T6187C", "-6195A", "-6196C", "A6197C", "G6198A", "G6201A", "G6204T", "A6205G", "A6206T", "-6207C", "-6208T", "-6212G", "-6213A", "-6214C", "-6215A", "-6216T", "-6217G", "-6218C", "-6219A", "T6252C", "G6253A", "A6261T", "A6262C", "A6276T", "A6362G", "G6442A", "C6483T", "G6547A", "G6569A", "G6577A", "A6616G", "A6649T", "A6659G", "-6686G", "-6687G", "-6688T", "-6689A", "-6690C", "-6691A", "G6693C", "A6734G", "A6764G", "T6766G", "A6774C", "A6796G", "A6825-", "G6828T", "G6829T", "-6830G", "-6831G", "-6832A", "A6836-", "A6840C", "A6857G", "C6859A", "T6860C", "C6881G", "A6957G", "T6958G", "A6959T", "-6973C", "A6974G", "-6975T", "-6976G", "-6977A", "-6978C", "G6980A", "-6994G", "C7014T", "T7095G", "A7096G", "A7210G", "T7270A", "G7390A", "G7717A", "A7734G", "A7763C", "C7801A", "A7846G", "T7864C", "T7916C", "G7970A", "G8001A", "G8231A", "G8239A", "G8276A", "A8297G", "G8304C", "C8320A", "G8373A", "A8405G", "G8407A", "T8480C", "-8487A", "C8491G", "G8506A", "G8627A"], "INT": ["P90S", "I101L"], "RT-p51": ["T39A", "K64R", "E207K", "S251N", "V254G", "D291E", "Q334E", "T400I"], "RT-p66": ["T39A", "K64R", "E207K", "S251N", "V254G", "D291E", "Q334E", "T400I", "E492K"], "gp120": ["-5L", "K18R", "D21N", "-107N", "-108G", "-109S", "-110N", "-112H", "-114V", "-115S", "-116K", "N117D", "-119Q", "M133T", "E136V", "K141I", "N160S", "N161S", "S162R", "T170A", "P210L", "E239K", "K265N", "I269V", "I279T", "H280P", "Y290V", "A291-", "R292-", "D294-", "N304E", "K307A", "N312D", "H324-", "N328-", "K329-", "N335E", "S336P", "L343V", "-368G", "N369Y", "-372S", "-373N", "T374V", "-375T", "G376R", "-384D", "T387I", "N397K", "I414R", "N432K"], "gp41": ["K77R", "D113E", "K144R", "K154Q", "N166K", "S205P", "E223K", "R233K", "A310T", "A325T", "I332V", "R334T"], "nef": ["V11I", "R22Q", "S49T", "A50S", "C55Y"], "p17": ["M31I", "L46V", "N47D", "S66P", "F79Y", "E106K", "K127T", "Q130R"], "p24": ["I15L", "G106E", "H120N", "E180D"], "p6": ["M17I", "P30S"], "p7": ["M1I"], "pro": ["L63P", "I85V"], "rev": ["R41Q"], "tat": ["P3L", "T58A", "N80K"], "vif": ["Y30H", "V31I", "Q34T", "V128I", "R130S", "M189T"], "vpu": ["V10A", "V21G", "V22G", "R34I", "R37K", "R47K", "E51K", "D60E", "T61L", "D62S", "E63T", "A65V", "L67M", "-68G", "V69D", "E70F", "M71D", "G72H", "F74-", "D75-", "P76-"]}, "labels": {"aa": "INT: P90S, I101L; RT-p51: T39A, K64R, E207K, S251N, V254G, D291E, Q334E, T400I; RT-p66: T39A, K64R, E207K, S251N, V254G, D291E, Q334E, T400I, E492K; gp120: -5L, K18R, D21N, -107N, -108G, -109S, -110N, -112H, -114V, -115S, -116K, N117D, -119Q, M133T, E136V, K141I, N160S, N161S, S162R, T170A, P210L, E239K, K265N, I269V, I279T, H280P, Y290V, A291-, R292-, D294-, N304E, K307A, N312D, H324-, N328-, K329-, N335E, S336P, L343V, -368G, N369Y, -372S, -373N, T374V, -375T, G376R, -384D, T387I, N397K, I414R, N432K; gp41: K77R, D113E, K144R, K154Q, N166K, S205P, E223K, R233K, A310T, A325T, I332V, R334T; nef: V11I, R22Q, S49T, A50S, C55Y; p17: M31I, L46V, N47D, S66P, F79Y, E106K, K127T, Q130R; p24: I15L, G106E, H120N, E180D; p6: M17I, P30S; p7: M1I; pro: L63P, I85V; rev: R41Q; tat: P3L, T58A, N80K; vif: Y30H, V31I, Q34T, V128I, R130S, M189T; vpu: V10A, V21G, V22G, R34I, R37K, R47K, E51K, D60E, T61L, D62S, E63T, A65V, L67M, -68G, V69D, E70F, M71D, G72H, F74-, D75-, P76-"}}}]}]}, {"name": "results/subtype_trees/CRF22_01A1.nwk", "node_attrs": {"div": 0.11381000000000001, "clade_membership": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["C185-", "T201C", "A697G", "A774G", "A980G", "A1034G", "G1562A", "A1564G", "C1571T", "T1754-", "C1755-", "G1772A", "A1777G", "T1783A", "T1785C", "A1786C", "C1795T", "G1846A", "T1857A", "C1864T", "T1868C", "C1873T", "G1901A", "A1907G", "A1963G", "G1981A", "T2080C", "T2095C", "T2101A", "C2211A", "C2281T", "G2362A", "C2365T", "T2380G", "C2386A", "A2392T", "A2422G", "T2440C", "G2456T", "T2499C", "G2518A", "T2521C", "A2524G", "G2602T", "A2612G", "C2638T", "T2653C", "C2671T", "A2715C", "A2716T", "A2727G", "A2728C", "A2734G", "C2740T", "A2755G", "G2761A", "A2764G", "T2779C", "C3207T", "A3208G", "T3493A", "T3541C", "C3542T", "G3664A", "G3667A", "A3715G", "A3755T", "A3769G", "C3773T", "T3779C", "A3877G", "G3896A", "T3943C", "A3952G", "T3991G", "C3995T", "C4201T", "G4267A", "C4270A", "G4273A", "T4276A", "T4391A", "C4412T", "G4637A", "A4693G", "G4695A", "G4816A", "G4861A", "C4871T", "A4878G", "A4892G", "G4904A", "G4995A", "A5005G", "T5018C", "C5034T", "A5049G", "C5056A", "A5062T", "G5066A", "T5073C", "G5140A", "G5143A", "C5168T", "A5176G", "C5186A", "A5215C", "A5236G", "G5246A", "A5248C", "C5251T", "C5448T", "C5496A", "G5499A", "G5534A", "A5535G", "C5560A", "C5563A", "G5581A", "G5607A", "A5612C", "A5619G", "T5628G", "A5643G", "G5644A", "C5655A", "A5658C", "G5659T", "C5660T", "C5664A", "C5679T", "T5686G", "C5797T", "T5799G", "T5801C", "G5802C", "G5803A", "-5815G", "-5816A", "-5817A", "-5818A", "-5821G", "-5822G", "-5823G", "-5824A", "G5864-", "A5865-", "C6139T", "-6164A", "-6165C", "-6166C", "-6178T", "-6179A", "-6183A", "C6184T", "A6186C", "-6189C", "C6193-", "-6196T", "-6213C", "-6214A", "-6218G", "A6230G", "C6241T", "C6247T", "G6253A", "C6278A", "G6303A", "C6317G", "C6318A", "G6339A", "-6340A", "C6613A", "A6649T", "A6799T", "G6905A", "-6966C", "-6984C", "-6994G", "-6995A", "-6996A", "-6997T", "-6998G", "C7014T", "T7059C", "A7160G", "G7225A", "G7269A", "A7275G", "A7459G", "C7463A", "A7470G", "C7517G", "T7618C", "T7627G", "T7630A", "G7657A", "A7701G", "G7769T", "G7773C", "A7782G", "A7796T", "A7816T", "T7843C", "T7852A", "G7873A", "C7874A", "A7935C", "C7936A", "C7937A", "A7941C", "G7942A", "A7948T", "C7950T", "G7977A", "C7984A", "G7997A", "A7998C", "C8005G", "G8006A", "G8143A", "T8374-", "T8390C", "A8405G", "G8407A", "C8415G", "T8451C", "A8469G", "C8471A", "C8477T", "C8488-", "A8489-", "C8491-", "T8492-", "C8494A", "G8502A", "A8503G", "C8509T", "A8531C", "A8604G", "C8666G", "T8770A", "G8873A", "C9097T"], "INT": ["D41N", "D167E", "S206T", "D288N"], "RT-p51": ["T39K", "D121Y", "I135T", "E169D", "T173A", "E207A", "K211S", "A371V"], "RT-p66": ["T39K", "D121Y", "I135T", "E169D", "T173A", "E207A", "K211S", "A371V", "H483Y"], "gp120": ["D4N", "N113-", "I126V", "K127R", "Q142R", "P155K", "E204K", "K265N", "H280R", "K323-", "G351R", "T387I", "K474R"], "gp41": ["K56R", "Y108Q", "E133G", "A156S", "S157T", "N160S", "T165S", "L191I", "H211P", "H212S", "Q213P", "E215G", "P216L", "G225E", "D232T", "V235I"], "nef": ["R22Q", "P25A", "T48M", "S49N", "A50-", "T51-", "D54S", "A56V", "E63D", "S88G", "Q104K", "F143Y", "E158K"], "p17": ["D121G"], "p24": ["I15V"], "p6": ["K33R", "L35Q", "Y36P", "A39V", "*50L"], "p7": ["R7K", "K33R"], "pro": ["D35N", "N37D"], "rev": ["D7S", "P30K", "E32R", "T34S", "R50N", "R53D", "G99R"], "tat": ["N40K", "R53K", "Q54H", "R62S", "Q63K", "V69I", "T76Q", "T77A", "R78Q", "N80V", "P81S"], "vif": ["K36R", "R77K", "I98V", "A137T", "T155A", "T157K", "T159I", "G185E", "S186N"], "vpr": ["H28N", "E48N"], "vpu": ["Q2T", "V13I", "A18L", "F27A", "E66K", "-73N"]}, "labels": {"aa": "INT: D41N, D167E, S206T, D288N; RT-p51: T39K, D121Y, I135T, E169D, T173A, E207A, K211S, A371V; RT-p66: T39K, D121Y, I135T, E169D, T173A, E207A, K211S, A371V, H483Y; gp120: D4N, N113-, I126V, K127R, Q142R, P155K, E204K, K265N, H280R, K323-, G351R, T387I, K474R; gp41: K56R, Y108Q, E133G, A156S, S157T, N160S, T165S, L191I, H211P, H212S, Q213P, E215G, P216L, G225E, D232T, V235I; nef: R22Q, P25A, T48M, S49N, A50-, T51-, D54S, A56V, E63D, S88G, Q104K, F143Y, E158K; p17: D121G; p24: I15V; p6: K33R, L35Q, Y36P, A39V, *50L; p7: R7K, K33R; pro: D35N, N37D; rev: D7S, P30K, E32R, T34S, R50N, R53D, G99R; tat: N40K, R53K, Q54H, R62S, Q63K, V69I, T76Q, T77A, R78Q, N80V, P81S; vif: K36R, R77K, I98V, A137T, T155A, T157K, T159I, G185E, S186N; vpr: H28N, E48N; vpu: Q2T, V13I, A18L, F27A, E66K, -73N", "clade": "CRF22_01A1"}}, "children": [{"name": "MT349413", "node_attrs": {"div": 0.17735, "accession": "MT349413", "clade_membership": {"value": "CRF22_01A1"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10CMLB092"}, "LANL_subtype": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["C155T", "G158A", "A159T", "C160-", "G162-", "T163-", "G164-", "T165-", "A166-", "A168-", "A169-", "A170-", "A171-", "T172-", "C173-", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "G256A", "T258C", "A261G", "-304T", "A356G", "G424A", "T435A", "G438A", "C456T", "A458G", "C471A", "T479A", "A520G", "G579A", "T614G", "G653A", "A660C", "T662G", "G665A", "A675C", "-714A", "-716T", "G810A", "T992G", "C1061T", "T1064C", "A1250G", "G1253A", "T1262C", "A1265C", "C1280T", "A1292C", "A1352G", "A1448C", "G1455A", "C1491A", "G1498C", "C1536T", "C1610A", "A1614C", "G1619A", "A1656C", "C1692A", "A1694G", "A1709G", "T1749C", "-1754C", "-1755C", "-1756C", "G1771A", "C1826A", "C1865T", "C1903T", "A2003C", "C2057A", "A2059G", "T2087C", "A2178C", "A2210G", "A2212T", "A2241G", "G2273A", "A2290G", "A2314G", "T2338C", "A2419G", "T2449C", "C2464T", "C2485T", "G2548A", "A2557G", "C2575T", "C2605T", "T2689C", "T2770C", "G2821A", "G2830A", "C2845T", "T2905C", "C2909G", "C2960T", "G3010A", "G3037A", "T3059A", "C3067T", "G3085A", "A3094G", "T3181A", "T3219C", "C3232T", "A3247G", "A3277G", "A3280G", "T3358A", "C3391G", "C3394T", "T3399C", "T3436C", "C3449T", "A3493G", "A3520G", "A3547G", "G3553A", "A3578G", "A3592C", "G3631A", "A3637T", "T3644A", "A3684G", "A3736G", "A3739G", "A3768G", "G3787A", "G3816A", "T3865A", "C3892T", "G3989A", "G3991A", "C4015T", "A4057G", "A4130C", "G4131C", "T4234A", "T4330A", "A4334G", "G4335A", "A4339G", "G4354A", "A4525G", "A4625G", "G4642A", "C4645G", "A4646C", "T4656A", "A4661G", "T4670C", "A4721G", "G4737A", "G4774A", "G4786C", "T4799C", "T4805G", "A4815C", "C4826A", "C4890A", "G4923A", "C4925A", "A4956C", "G4975T", "A4993C", "A5033C", "T5072G", "G5082A", "G5087A", "G5128A", "T5147C", "A5155G", "A5164G", "G5170A", "C5213A", "G5226A", "C5248T", "C5250T", "G5257A", "G5276C", "A5287T", "A5290G", "A5305G", "G5312A", "A5355T", "G5382C", "G5418A", "T5424C", "G5471A", "G5472C", "T5483C", "A5537C", "C5539A", "C5584T", "C5611A", "G5620C", "G5635A", "G5638A", "G5647A", "G5650T", "A5652T", "A5655T", "C5658T", "G5662A", "G5668A", "A5682G", "G5683T", "G5686A", "A5696T", "G5700A", "T5708A", "A5715C", "G5717A", "A5718T", "G5725T", "A5726G", "A5733C", "A5738G", "G5741C", "A5746T", "G5749A", "G5755T", "G5758A", "G5761T", "A5762G", "A5764G", "T5766A", "G5775A", "A5776C", "G5777T", "G5779T", "G5781A", "A5790T", "-5791T", "G5794T", "C5802T", "-5809G", "-5810C", "-5811T", "G5812-", "G5815C", "-5819T", "-5820G", "G5839-", "T5840-", "T5841-", "G5843T", "A5846G", "T5847G", "A5848T", "A5849T", "T5850C", "T5851C", "A5855T", "G5856T", "T5857G", "C5859A", "C5860G", "T5861G", "A5863C", "-5864T", "-5865C", "-5866C", "C5869A", "G5872C", "C5880T", "A5881T", "G5882T", "A5889T", "G5893A", "T5895G", "T5901G", "G5907A", "G5915A", "A5918G", "C5924T", "T5930G", "T5932C", "G5933T", "C5934A", "A5935C", "G5939T", "G5942C", "C5944G", "G5948A", "A5950C", "T5951C", "T5953C", "G5954A", "T5956A", "C5958A", "A5959C", "G5960T", "G5963C", "T5964C", "G5965C", "C5966A", "A5967C", "T5968A", "T5971A", "T5973A", "C5974T", "A5981G", "C5982G", "C5988G", "C5998A", "A5999T", "C6000T", "A6001T", "G6002T", "C6014A", "G6017T", "T6026C", "G6028A", "T6030C", "A6033T", "T6034C", "A6037G", "A6038-", "C6039-", "A6040-", "G6041-", "A6042T", "T6047G", "A6050C", "A6053C", "G6055C", "G6058C", "A6059T", "A6060G", "A6061C", "A6062G", "A6063G", "A6065T", "A6068T", "G6070T", "G6074C", "A6075T", "G6076T", "C6077G", "A6078T", "G6079A", "A6080C", "G6085-", "G6086-", "A6087-", "G6088-", "G6089-", "A6090-", "T6091-", "A6092-", "T6093-", "A6094-", "A6095-", "T6096-", "T6097-", "A6098-", "G6099-", "T6100-", "T6101-", "T6102-", "A6103-", "T6104-", "G6105-", "G6106-", "G6107-", "A6108-", "T6109-", "C6110-", "A6111-", "A6112-", "A6113-", "G6114-", "C6115-", "C6116-", "T6117-", "A6118-", "A6119-", "A6120-", "G6121-", "C6122-", "C6123-", "A6124-", "T6125-", "G6126-", "T6127-", "G6128-", "T6129-", "A6130-", "A6131-", "A6132-", "G6133-", "T6134-", "T6135-", "A6136-", "A6137-", "C6138-", "T6139-", "C6140-", "C6141-", "T6142-", "C6143-", "T6144-", "C6145-", "T6146-", "G6147-", "C6148-", "T6150C", "C6153G", "T6156C", "A6157T", "A6159C", "T6160C", "T6161C", "G6162A", "T6163A", "C6165A", "C6166T", "-6167A", "-6168A", "-6169T", "-6170T", "-6171T", "-6172T", "-6173A", "-6174C", "-6175C", "A6176C", "-6177A", "T6178G", "-6180C", "A6185T", "C6190T", "A6191C", "-6193G", "-6195G", "A6197G", "-6198G", "-6201A", "-6203G", "-6204A", "-6205C", "-6207C", "-6208A", "-6209T", "-6210T", "-6211A", "-6212G", "-6215G", "-6216A", "-6217A", "-6219A", "-6220G", "-6221C", "-6222C", "-6223A", "-6225G", "-6226T", "A6228C", "A6233C", "A6275C", "T6295G", "G6317A", "A6330C", "G6336A", "A6339C", "C6364T", "C6381G", "C6397T", "G6451A", "A6456G", "A6463G", "A6490T", "G6532A", "A6535G", "A6574G", "G6577T", "T6649C", "T6658C", "C6661G", "A6677G", "G6681A", "A6684T", "T6688A", "T6690-", "A6691-", "G6693A", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6717T", "T6722C", "G6725A", "A6728-", "G6729-", "A6730-", "G6731-", "G6732-", "T6733-", "T6735A", "A6736T", "T6738A", "A6739T", "T6745C", "A6751G", "C6752A", "C6758T", "A6764G", "T6766G", "G6771A", "A6773G", "A6774G", "A6790T", "A6798G", "A6808G", "A6809G", "A6818C", "G6819A", "-6824T", "A6841C", "T6849A", "T6856C", "C6859A", "T6860C", "C6881A", "A6910G", "A6926T", "A6931C", "G6935A", "G6936A", "C6937G", "A6947G", "G6954T", "-6956C", "-6957A", "-6958T", "-6961G", "-6962A", "-6963A", "-6964T", "C6966A", "-6968T", "-6970G", "-6972G", "-6973C", "-6975T", "T6983C", "-6985A", "T6988C", "-6999G", "-7000C", "T7003G", "-7005G", "C7020A", "G7021A", "G7026A", "G7058A", "C7078T", "A7094G", "G7101A", "C7124T", "G7132A", "G7147T", "A7148G", "A7149G", "T7150C", "T7159C", "C7161A", "A7162G", "A7164C", "G7190A", "G7197A", "T7217C", "T7222C", "G7289C", "T7309A", "A7312C", "T7406A", "G7513A", "A7549G", "A7572G", "T7615C", "C7623A", "A7626T", "G7628A", "A7629C", "C7645A", "C7651A", "C7655T", "G7677A", "A7711G", "C7747A", "G7765A", "T7876A", "A7903G", "A7938G", "G8001A", "G8005A", "A8011G", "A8014T", "A8032G", "C8033A", "T8047C", "G8050A", "G8061T", "T8097C", "T8159A", "G8160A", "G8161A", "A8173G", "G8181T", "A8207T", "C8213T", "C8232T", "G8234A", "G8254A", "T8265C", "C8293T", "C8294A", "G8324A", "G8354A", "G8365A", "C8369A", "A8370C", "-8374A", "G8375A", "C8382T", "G8398T", "G8424A", "G8439C", "T8440C", "T8444A", "A8449G", "T8450A", "C8451G", "A8455G", "T8456A", "A8461T", "G8463T", "G8464C", "A8465T", "G8466C", "G8469-", "T8470-", "A8471-", "A8472-", "C8473G", "A8475T", "G8476C", "T8480C", "A8481C", "T8483A", "-8487T"], "INT": ["R14K", "V72I", "S119P", "F185L", "R187E", "R284G"], "RT-p51": ["E28A", "K39D", "K49R", "V60I", "S322T", "V375A", "D432E", "V435A"], "RT-p66": ["E28A", "K39D", "K49R", "V60I", "S322T", "V375A", "D432E", "V435A", "I495V", "E514D", "L517I", "K530R", "K558R"], "gp120": ["S1L", "A2E", "S3A", "N4S", "-5K", "L6F", "T9I", "V10F", "Y12F", "V14G", "V16G", "D21N", "T22A", "C26G", "A27Y", "D29Y", "A30P", "A32T", "Y33H", "D34K", "T35N", "E36*", "V37P", "H38T", "N39K", "V40D", "T43G", "A45G", "T49F", "D50Y", "Q54K", "E55*", "V59A", "N60I", "T62-", "E63-", "E78-", "D79-", "I80-", "I81-", "S82-", "L83-", "W84-", "D85-", "Q86-", "S87-", "L88-", "K89-", "P90-", "C91-", "V92-", "K93-", "L94-", "T95-", "P96-", "L97-", "C98-", "V99-", "T100-", "L101-", "N102-", "C103-", "T104-", "-122E", "-123P", "-124G", "E125A", "R127Q", "M133I", "K141Q", "R142K", "N159T", "N160D", "S162K", "A176G", "K201R", "K212N", "E241D", "N261T", "I269M", "T275A", "R276K", "K277I", "S278R", "I279H", "R280-", "-282H", "-283I", "A288V", "Y290H", "A291T", "R292N", "G293N", "D294-", "I295-", "Q300K", "H302Y", "N304E", "S306N", "K307G", "Q315R", "Q319E", "R322-", "H324Q", "W325K", "-326Y", "-327W", "K329N", "I332N", "N335K", "S336P", "L343I", "N358Y", "G361K", "S365G", "W367L", "-368H", "-370G", "T371N", "-372W", "-373S", "T374M", "-375P", "-382G", "-383K", "-384G", "P389Q", "R391K", "V402T", "I414V", "R416K", "N432G", "T436E", "N437T", "D446N", "R448K", "E479Q"], "gp41": ["S35T", "K90R", "S107N", "Q108L", "D109T", "N114K", "S125N", "D148E", "G215D", "R233K", "L237F", "L244I", "C253F", "L265S", "R276H", "L277S", "W286K", "G293V", "T302S", "L304F", "A310V", "V311I", "I321T", "G326C", "H331N", "F340L", "E341K"], "nef": ["S8N", "S9R", "I10L", "V11E", "P14S", "R19I", "E28K", "V33P", "D36G", "L37V", "D38G", "H40L", "G41S", "A42P", "I43-", "T44-"], "p1": ["S9H"], "p17": ["R30K", "L34I", "V35I", "L46I", "E62G", "V82I", "D93E", "N109Q", "K114Q", "K127N"], "p2": ["Q8H", "-12S"], "p24": ["V27I", "H87Q", "E187D"], "p6": ["P5T", "S23P", "R31K"], "p7": ["Q9K", "R11T", "D48E", "T50P"], "pro": ["L10I", "K69Q"], "rev": ["T8P", "R32K", "D53N", "I55V", "S56C", "T62D", "S67P", "A68T", "V104E", "E105K", "I109V"], "tat": ["E2D", "W32Y", "V36A", "H54P", "P70S", "V80I"], "vif": ["R19K", "T20S", "L24I", "G37N", "V51I", "R63K", "R67T", "H73Q", "K77Q", "H80Q", "L102M", "D113K", "I124L", "R130I", "Q136P", "N140S", "V166I", "R181K", "N190S", "*193W"], "vpr": ["Y15H"], "vpu": ["V10I", "G11R", "V14I", "A15S", "A19T", "V21I", "I25M", "V26L", "A27I", "Y30F", "R34K", "Q36H", "R37N", "D40C", "L42F", "E44G", "R45T", "R47*", "E48K", "A50S", "E51K", "D52C", "S53G", "S57L", "E58*", "D62Y", "E63*", "-68A", "V69Q", "E70-", "V78-", "G79V", "D80G", "N81F", "*83F"]}, "labels": {"aa": "INT: R14K, V72I, S119P, F185L, R187E, R284G; RT-p51: E28A, K39D, K49R, V60I, S322T, V375A, D432E, V435A; RT-p66: E28A, K39D, K49R, V60I, S322T, V375A, D432E, V435A, I495V, E514D, L517I, K530R, K558R; gp120: S1L, A2E, S3A, N4S, -5K, L6F, T9I, V10F, Y12F, V14G, V16G, D21N, T22A, C26G, A27Y, D29Y, A30P, A32T, Y33H, D34K, T35N, E36*, V37P, H38T, N39K, V40D, T43G, A45G, T49F, D50Y, Q54K, E55*, V59A, N60I, T62-, E63-, E78-, D79-, I80-, I81-, S82-, L83-, W84-, D85-, Q86-, S87-, L88-, K89-, P90-, C91-, V92-, K93-, L94-, T95-, P96-, L97-, C98-, V99-, T100-, L101-, N102-, C103-, T104-, -122E, -123P, -124G, E125A, R127Q, M133I, K141Q, R142K, N159T, N160D, S162K, A176G, K201R, K212N, E241D, N261T, I269M, T275A, R276K, K277I, S278R, I279H, R280-, -282H, -283I, A288V, Y290H, A291T, R292N, G293N, D294-, I295-, Q300K, H302Y, N304E, S306N, K307G, Q315R, Q319E, R322-, H324Q, W325K, -326Y, -327W, K329N, I332N, N335K, S336P, L343I, N358Y, G361K, S365G, W367L, -368H, -370G, T371N, -372W, -373S, T374M, -375P, -382G, -383K, -384G, P389Q, R391K, V402T, I414V, R416K, N432G, T436E, N437T, D446N, R448K, E479Q; gp41: S35T, K90R, S107N, Q108L, D109T, N114K, S125N, D148E, G215D, R233K, L237F, L244I, C253F, L265S, R276H, L277S, W286K, G293V, T302S, L304F, A310V, V311I, I321T, G326C, H331N, F340L, E341K; nef: S8N, S9R, I10L, V11E, P14S, R19I, E28K, V33P, D36G, L37V, D38G, H40L, G41S, A42P, I43-, T44-; p1: S9H; p17: R30K, L34I, V35I, L46I, E62G, V82I, D93E, N109Q, K114Q, K127N; p2: Q8H, -12S; p24: V27I, H87Q, E187D; p6: P5T, S23P, R31K; p7: Q9K, R11T, D48E, T50P; pro: L10I, K69Q; rev: T8P, R32K, D53N, I55V, S56C, T62D, S67P, A68T, V104E, E105K, I109V; tat: E2D, W32Y, V36A, H54P, P70S, V80I; vif: R19K, T20S, L24I, G37N, V51I, R63K, R67T, H73Q, K77Q, H80Q, L102M, D113K, I124L, R130I, Q136P, N140S, V166I, R181K, N190S, *193W; vpr: Y15H; vpu: V10I, G11R, V14I, A15S, A19T, V21I, I25M, V26L, A27I, Y30F, R34K, Q36H, R37N, D40C, L42F, E44G, R45T, R47*, E48K, A50S, E51K, D52C, S53G, S57L, E58*, D62Y, E63*, -68A, V69Q, E70-, V78-, G79V, D80G, N81F, *83F"}}}, {"name": "CRF22_01A1_NODE_0000001", "node_attrs": {"div": 0.11553000000000001, "clade_membership": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["T531C", "T571A", "G978A", "T1752C", "T2299C", "A2350G", "G2682A", "G2693A", "C3751T", "G3907A", "G3925A", "T4697G", "C4911A", "C4914T", "G4968A", "G4982T", "T5006C", "G5185A", "A5625C", "G5626T", "C5627G", "T5653C", "G5808T", "-5813T", "-5814G", "A6234G", "A6279G", "-6689A", "G7198A", "A7818G", "A7943G", "A7947G", "A7962G", "A8182G", "A8288T", "A8323T", "C8485T", "A8486G"], "INT": ["M50I"], "RT-p51": ["G196E"], "RT-p66": ["G196E"], "gp41": ["K172R", "R214E", "E220G", "I329F"], "p17": ["S66P", "F79Y"], "p24": ["V83M"], "rev": ["G108D", "T112A"], "tat": ["G79R", "K85E"], "vif": ["H110Y", "V128I", "R132S"], "vpu": ["A7W", "F16L"]}, "labels": {"aa": "INT: M50I; RT-p51: G196E; RT-p66: G196E; gp41: K172R, R214E, E220G, I329F; p17: S66P, F79Y; p24: V83M; rev: G108D, T112A; tat: G79R, K85E; vif: H110Y, V128I, R132S; vpu: A7W, F16L"}}, "children": [{"name": "JN864059", "node_attrs": {"div": 0.15268, "accession": "JN864059", "clade_membership": {"value": "CRF22_01A1"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "LB054"}, "LANL_subtype": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["A235G", "G237A", "A242T", "C243-", "T244-", "C245-", "G246-", "G247-", "C248-", "T249-", "T250-", "G251-", "C252-", "T253-", "G254-", "A255-", "G256-", "G257-", "T258-", "G259-", "C260-", "A261-", "C262-", "A263-", "C264-", "A265-", "G266-", "C267-", "A268-", "A269-", "G270-", "A271-", "G272-", "G273-", "C274-", "G275-", "A276-", "G277-", "A278-", "G279-", "C281-", "G282-", "G283-", "C284-", "G285-", "A286-", "C287-", "T288-", "G289-", "G290-", "G294T", "T295C", "G298T", "A301C", "-304T", "-305T", "A374G", "A440G", "A461C", "C482T", "A509G", "C535A", "A548G", "C558A", "A576G", "C587A", "C590T", "A678G", "C679A", "G706A", "-714C", "-716A", "G738A", "G740A", "T763C", "G771C", "G774T", "A779T", "G803A", "A866G", "A881G", "T944C", "G956A", "G1034A", "C1060A", "A1089G", "G1127A", "A1142G", "T1143C", "C1220T", "G1253A", "A1274G", "A1301G", "T1329G", "A1339G", "G1430A", "G1472A", "T1481C", "C1517T", "G1543A", "C1550T", "G1589A", "C1613T", "C1615A", "C1693A", "G1713A", "C1714T", "A1715G", "-1746T", "-1747C", "-1748C", "A1772G", "C1786A", "T1787G", "T1790C", "G1835A", "A1857G", "C1868T", "T1895C", "G1963A", "T2062C", "C2127A", "C2296T", "A2297G", "C2353T", "T2365C", "A2404G", "A2419G", "G2428A", "C2440T", "T2456G", "G2524A", "A2579T", "G2683A", "A2840C", "A2872G", "G2926A", "A2937G", "T2978C", "G2984A", "C3067T", "A3071G", "A3165G", "A3200G", "C3201T", "T3207C", "C3232T", "A3233G", "C3252T", "A3280G", "A3283G", "T3319C", "G3398A", "G3448A", "A3503G", "G3508A", "T3577C", "C3600G", "G3631A", "C3649T", "A3685G", "A3802G", "C3808A", "T3898C", "C3908T", "A4030G", "A4130C", "G4131C", "T4198C", "G4354A", "A4391T", "A4427T", "A4433C", "A4455T", "A4564G", "C4645A", "A4646T", "A4650C", "T4656A", "T4678C", "T4691A", "A4692G", "T4712C", "C4754T", "T4769A", "G4774A", "G4786C", "G4818C", "A4819C", "C4826T", "T4835A", "A4865T", "A4880G", "C4890A", "G4913A", "C4937G", "A4956C", "G5005A", "G5049A", "C5050A", "T5062G", "T5102C", "G5128A", "A5164G", "C5213G", "T5228C", "C5237T", "A5277T", "A5278G", "A5302G", "A5345G", "G5375A", "G5382T", "G5385A", "T5451C", "G5463A", "T5466C", "G5482T", "T5483A", "G5535A", "A5548G", "G5558A", "C5559T", "C5612A", "A5613T", "C5614T", "G5619A", "C5625T", "A5631T", "T5687C", "T5688C", "G5699A", "T5708G", "A5718G", "C5727T", "-5791G", "A5817G", "-5819T", "-5820G", "G5907A", "T5956G", "C5958A", "G5972A", "T6026A", "C6067A", "G6076C", "A6092G", "G6121C", "A6159C", "-6167A", "-6168A", "-6169T", "-6170G", "-6171T", "-6172C", "-6173A", "-6174C", "-6175T", "A6176C", "-6177T", "-6180A", "A6185G", "A6191C", "-6193G", "-6195G", "-6198A", "-6201G", "-6203A", "-6204C", "-6205T", "A6206G", "-6207A", "-6208A", "-6209A", "-6210A", "-6211A", "-6212A", "C6213T", "-6215A", "-6216A", "-6217A", "G6218A", "-6219T", "-6220G", "-6221G", "-6222A", "-6223A", "-6225A", "-6226T", "G6227T", "A6228C", "T6244C", "C6263A", "A6268G", "A6273G", "G6274A", "A6286C", "A6311C", "T6322C", "G6323A", "A6326G", "T6328A", "A6329G", "G6345T", "G6451A", "A6461C", "A6462C", "A6464G", "C6482A", "C6483A", "C6511T", "C6563T", "G6572A", "G6593A", "A6605G", "T6632C", "G6634T", "C6636A", "A6638G", "C6641T", "T6649G", "A6683C", "A6712G", "A6734G", "T6735A", "A6736T", "A6754G", "A6774G", "A6775C", "G6779A", "T6793C", "C6797T", "A6798C", "C6800A", "A6821-", "-6824C", "A6825T", "T6826A", "G6828T", "-6830G", "A6840G", "C6853T", "A6854G", "T6874C", "A6905G", "A6934C", "A6959-", "A6960-", "-6968T", "-6970G", "A6971C", "-6972C", "-6973T", "A6974T", "-6975G", "-6976G", "-6977A", "-6978A", "-6979T", "-6980G", "-6981A", "G6982C", "T6983A", "-6985T", "A6986G", "T6988C", "A6990C", "C6993T", "-6999G", "-7000C", "A7002C", "-7005A", "T7009C", "T7014C", "C7016A", "G7033A", "C7059T", "C7124T", "G7147A", "A7155T", "G7197A", "A7269G", "A7290G", "A7297G", "C7313A", "G7315A", "A7348C", "T7357C", "A7373C", "A7505C", "A7533G", "C7579A", "C7603T", "T7604G", "C7625A", "A7626T", "C7633T", "T7642G", "C7690A", "C7723T", "G7735A", "C7773A", "G7790A", "T7796A", "A7819G", "A7918G", "A7937G", "A7938C", "G7944C", "C7960A", "A7992G", "A7997G", "C7998G", "T8035C", "T8047C", "C8048T", "G8050C", "C8065T", "T8094C", "C8103T", "A8130G", "T8166A", "G8171A", "C8223T", "G8231A", "G8239A", "T8279G", "T8281G", "T8290C", "G8329A", "T8366G", "C8369A", "A8370G", "T8371A", "G8373A", "-8374G", "G8377A", "G8387A", "A8400T", "C8460T", "G8479C", "A8497G", "T8505A", "G8554A", "G8555A", "G8558A", "C8688A", "T8690C", "C8747T", "A8750C", "T8756C", "T8786G", "A8827G", "C8840T", "G8846A", "G8864T", "A8873C", "T8887C", "T8897A", "G8898A", "A8915G", "A8918G", "G8936A", "C8966A", "A8969G", "C8990T", "A8991G"], "INT": ["D11E", "S119P", "T206S", "T218S", "I220L", "Y227F"], "RT-p51": ["T11K", "S68G", "Y121D", "S162C", "A200T", "K249Q", "A272P", "K281R", "E297K", "I326V", "K357R", "T369V", "V371A", "I380V", "T386I", "V435I"], "RT-p66": ["T11K", "S68G", "Y121D", "S162C", "A200T", "K249Q", "A272P", "K281R", "E297K", "I326V", "K357R", "T369V", "V371A", "I380V", "T386I", "V435I", "T470A", "A502G"], "gp120": ["D34E", "T35K", "V40I", "L58M", "N71K", "E74D", "I80V", "K89N", "N102T", "-105N", "-106V", "-107T", "-108L", "-109I", "-110G", "-111N", "-112T", "-113Q", "-114S", "-115N", "-116S", "-117T", "-118E", "-119K", "-120I", "-121K", "-122M", "-123E", "-124D", "E125S", "M133I", "L137I", "K140R", "I153L", "K155E", "D157N", "N158E", "N159A", "N161K", "S162T", "R164I", "K203P", "K204E", "P210K", "E240K", "E247K", "N251D", "K262E", "P263S", "N265K", "K277Q", "K307S", "E309K", "N312K", "Q315S", "Q316K", "Q319K", "K329R", "T334A", "R351G", "-368T", "N369W", "-370P", "T371W", "-372N", "-373D", "-375D", "-376T", "-377M", "N379G", "N381-", "-384D", "I387T", "L388I", "N434I", "T436A", "R448K", "K472R", "E479G"], "gp41": ["L4I", "I24L", "K77R", "S101A", "S107T", "Q108M", "D109E", "D113E", "D129E", "T157N", "D163N", "S165T", "S212A", "E214A", "D230G", "T232G", "L249F", "I264T", "A267V", "L277S", "L288H", "V290I", "T307I", "A310T"], "nef": ["S8R", "S9E", "I10W", "V11P", "G12Q", "I20L", "H40Y", "I43V", "S46T", "-50S", "N52-", "C55S", "R71K", "H116N", "N162S", "M168I", "E174D", "E177D", "M182T", "F185L", "D186N"], "p1": ["S9N"], "p17": ["E42D", "T67N", "L75I", "T81A", "T115E", "S124N", "K127Q"], "p2": ["-12G"], "p24": ["V3I", "V11A", "A14P", "V15L", "T110N", "S120G", "S200A", "K203R"], "p6": ["P5Q", "A12M"], "p7": ["R26K", "T50N"], "pro": ["V13I", "K20R"], "rev": ["S7N", "A15I", "K30S", "R32S", "N50R", "C63R", "S67L", "A68P", "L73F"], "tat": ["E2D", "V36Y", "T58A", "S61N", "A77P", "P84Q"], "vif": ["T20N", "N22H", "L24I", "V31A", "R36G", "G37K", "D61E", "R63K", "R67T", "D78P", "H83Q", "R93S", "L102M", "L109I", "D117E", "I124L", "A155K", "I159R", "R181K", "*193W"], "vpr": ["P37A", "H45Y", "E58V", "A93S", "G94S"], "vpu": ["T2H", "P3S", "Q5E", "R31K"]}, "labels": {"aa": "INT: D11E, S119P, T206S, T218S, I220L, Y227F; RT-p51: T11K, S68G, Y121D, S162C, A200T, K249Q, A272P, K281R, E297K, I326V, K357R, T369V, V371A, I380V, T386I, V435I; RT-p66: T11K, S68G, Y121D, S162C, A200T, K249Q, A272P, K281R, E297K, I326V, K357R, T369V, V371A, I380V, T386I, V435I, T470A, A502G; gp120: D34E, T35K, V40I, L58M, N71K, E74D, I80V, K89N, N102T, -105N, -106V, -107T, -108L, -109I, -110G, -111N, -112T, -113Q, -114S, -115N, -116S, -117T, -118E, -119K, -120I, -121K, -122M, -123E, -124D, E125S, M133I, L137I, K140R, I153L, K155E, D157N, N158E, N159A, N161K, S162T, R164I, K203P, K204E, P210K, E240K, E247K, N251D, K262E, P263S, N265K, K277Q, K307S, E309K, N312K, Q315S, Q316K, Q319K, K329R, T334A, R351G, -368T, N369W, -370P, T371W, -372N, -373D, -375D, -376T, -377M, N379G, N381-, -384D, I387T, L388I, N434I, T436A, R448K, K472R, E479G; gp41: L4I, I24L, K77R, S101A, S107T, Q108M, D109E, D113E, D129E, T157N, D163N, S165T, S212A, E214A, D230G, T232G, L249F, I264T, A267V, L277S, L288H, V290I, T307I, A310T; nef: S8R, S9E, I10W, V11P, G12Q, I20L, H40Y, I43V, S46T, -50S, N52-, C55S, R71K, H116N, N162S, M168I, E174D, E177D, M182T, F185L, D186N; p1: S9N; p17: E42D, T67N, L75I, T81A, T115E, S124N, K127Q; p2: -12G; p24: V3I, V11A, A14P, V15L, T110N, S120G, S200A, K203R; p6: P5Q, A12M; p7: R26K, T50N; pro: V13I, K20R; rev: S7N, A15I, K30S, R32S, N50R, C63R, S67L, A68P, L73F; tat: E2D, V36Y, T58A, S61N, A77P, P84Q; vif: T20N, N22H, L24I, V31A, R36G, G37K, D61E, R63K, R67T, D78P, H83Q, R93S, L102M, L109I, D117E, I124L, A155K, I159R, R181K, *193W; vpr: P37A, H45Y, E58V, A93S, G94S; vpu: T2H, P3S, Q5E, R31K"}}}, {"name": "CRF22_01A1_NODE_0000002", "node_attrs": {"div": 0.12081, "clade_membership": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["T303A", "C1002A", "A1097T", "G1452A", "G1495A", "A1657G", "A2463G", "A3230G", "G3836A", "C3843T", "A4243G", "G4677A", "A5557G", "A5652G", "A6183C", "T6199-", "A6229-", "A6635G", "T7024C", "T7114C", "T7153C", "C7313T", "A7622T", "C7633G", "G7700A", "C7921T", "G7944A"], "INT": ["A21T", "A23V"], "RT-p51": ["D123G"], "RT-p66": ["D123G"], "gp120": ["N261V", "-323E", "-382G"], "gp41": ["D110E", "G133S"], "nef": ["L198M"], "p2": ["A11G"], "p24": ["H91N"], "p7": ["R10K"], "tat": ["S61G"], "vif": ["V31I", "L109M"]}, "labels": {"aa": "INT: A21T, A23V; RT-p51: D123G; RT-p66: D123G; gp120: N261V, -323E, -382G; gp41: D110E, G133S; nef: L198M; p2: A11G; p24: H91N; p7: R10K; tat: S61G; vif: V31I, L109M"}}, "children": [{"name": "CRF22_01A1_NODE_0000003", "node_attrs": {"div": 0.12789, "clade_membership": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "G424A", "A426C", "-714A", "A715G", "G980A", "G1664A", "C1693T", "T2195A", "G2273A", "G2389A", "C2499T", "C2839A", "C2845A", "G3952A", "T3995C", "C4015T", "T4201C", "C4939G", "C5050A", "T5147C", "A5238T", "C5303T", "G5375A", "G5403T", "T5451C", "G5463T", "T5602A", "C5713G", "T5797-", "T5798-", "G5799-", "A5803G", "-5819G", "-5820T", "T5917C", "G5965A", "-6193T", "-6198C", "-6199C", "C6202T", "-6203G", "-6210T", "-6217G", "-6221A", "-6222A", "-6225A", "C6256T", "G6323A", "A6324G", "A6338G", "G6481A", "A6684C", "A6715G", "A6780C", "G6819A", "-6833A", "-6834A", "-6835C", "-6957A", "-6958T", "-6962A", "-6975C", "-6976A", "-6977G", "-6999A", "T7009C", "A7149T", "C7174T", "G7289C", "G7628A", "C7678T", "T7877G", "C8037T", "G8055A", "C8095A", "G8098A", "T8172C", "C8213T", "T8215A", "T8257A", "A8264G", "T8594C", "C8684T", "C8934A", "T9012-", "T9014-", "C9023-", "G9024-", "T9028-"], "INT": ["A124S"], "RT-p51": ["L34I", "V60I", "T135I", "D248E", "D250E", "A272P"], "RT-p66": ["L34I", "V60I", "T135I", "D248E", "D250E", "A272P"], "gp120": ["-107N", "-110T", "-111N", "D157S", "S162E", "K201N", "V261A", "K277T", "E309A", "R322K", "H324Y", "-327N", "-383N", "N432I", "E479Q"], "gp41": ["S192A", "D247E", "S251N", "V290A"], "nef": ["Q125H", "R192S"], "p17": ["M31L", "K127S"], "p24": ["M83I"], "p6": ["P5L"], "rev": ["L83I", "D84N"], "tat": ["E9D"], "vif": ["G37K", "A155E"], "vpr": ["Y15H"], "vpu": ["Q36E"]}, "labels": {"aa": "INT: A124S; RT-p51: L34I, V60I, T135I, D248E, D250E, A272P; RT-p66: L34I, V60I, T135I, D248E, D250E, A272P; gp120: -107N, -110T, -111N, D157S, S162E, K201N, V261A, K277T, E309A, R322K, H324Y, -327N, -383N, N432I, E479Q; gp41: S192A, D247E, S251N, V290A; nef: Q125H, R192S; p17: M31L, K127S; p24: M83I; p6: P5L; rev: L83I, D84N; tat: E9D; vif: G37K, A155E; vpr: Y15H; vpu: Q36E"}}, "children": [{"name": "JN864058", "node_attrs": {"div": 0.1626, "accession": "JN864058", "clade_membership": {"value": "CRF22_01A1"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "LB013"}, "LANL_subtype": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["A360C", "G361A", "A412G", "G413C", "C471A", "T473C", "A520C", "C539A", "C558T", "A576G", "G579C", "A585G", 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T135G, K155E, N160T, N161Q, A172T, K204E, E240D, E241D, T250S, T267S, A288T, Y290F, A291G, R292T, G293K, D294V, N312R, E323N, -326N, N328T, K329D, N335S, N349T, R351A, -368N, -370S, -372W, -373N, -375T, -376D, -377M, N378F, T380S, N381T, -384E, T385N, I387T, V402T, R416K, S435N, T436S, R448K, K472R; gp41: I24L, S42N, R46Q, H53Q, S107T, D109T, S133N, N140I, K154Q, S160N, N166K, S212T, L216I, I222T, G226D, D230G, A245F, R250H, A267V, A268V, L277S, A290T, G293R, I301T, I321G, R324I, A325L, G326F, L330I; nef: I20M, R21K, D38E, M48I, V56I, E65G, F120I, V133I, N156S, N162S, L189Q, A190P, R191P; p17: S9H, K26S, R30K, L46I, E62A, L75F, T81A, V82L, T84V, R91K, S111N, A118E, S124N, Q130R; p2: G11A, -12G; p24: N33S, M96I, G116A, R154K; p6: S14N, Q28R, R31T, P49L, L50*; pro: K20R, N35D; rev: R14T, R17K, K30N, R32G, S34N, A37T, C63F, R66G, E69Q, L73F, G111E; tat: K29H, V36I, Q60H, A77P, Q78R, V80E, G83D, S87P; vif: M16V, R19K, T20Q, H27Y, I31R, R36K, K92R, M109L, D117E, I124L, I128V, K176E, N186S; vpr: Q3R, H45F, N91H, G94S; vpu: V21F, Y30A, R34I, D40E, E44K, R47S, M71S, N73D"}}}, {"name": "JN864050", "node_attrs": {"div": 0.16945, "accession": "JN864050", "clade_membership": {"value": "CRF22_01A1"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "LB005"}, "LANL_subtype": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["T372C", "G378T", "A419G", "A423C", "T435A", "A518G", "C531T", "A534G", "A571T", "A606C", "A619G", "T662C", "G696A", "-716C", "C830T", "A839G", "A866G", "A923G", "T962A", "T1058C", "C1060A", "T1097C", "C1220T", "A1263T", "G1271T", "C1280T", "A1292C", "G1328A", "G1394A", "T1409C", "T1439C", "C1478A", "A1485C", "C1536T", "T1547C", "T1559C", "G1564A", "T1571C", "T1646C", "A1656C", "G1657A", "T1676C", "G1687A", "T1722C", "T1749C", "C1752T", "C1753T", "-1754C", "-1755C", "-1756C", "G1766A", "G1773A", "A1783C", "C1786G", "T1787C", "T1792C", "C1826A", "G1845A", "A1918G", "A1920G", "A1972G", "C1985A", "T1986C", "A2005C", 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"T8287A", "T8288A", "T8348G", "G8365A", "G8368A", "C8369A", "A8370-", "T8371-", "A8372-", "G8373-", "G8375-", "C8383A", "T8384G", "G8392T", "G8418A", "A8429G", "T8444A", "C8460T", "T8498C", "G8499C", "T8505A", "G8506A", "T8507G", "G8528A", "A8678G", "G8682A", "C8688A", "T8701A", "A8717T", "C8725T", "A8726G", "G8732A", "A8750T", "G8787A", "A8788G", "T8789C", "A8793G", "G8794A", "G8864T", "A8870T", "C8883A", "C8900T", "A8918T", "C8919T", "A8924G", "C8926T", "C8928G", "G8931C", "T8939C", "T8946A", "T8949A", "A8950C", "C8951A", "A8954G", "G8955A", "C8966-", "A8967-", "G8968-", "A8969-", "A8970-", "A8971-", "C8972-", "T8973-", "G8974-", "C8975-", "T8976-", "G8977-", "A8978-", "C8979-", "A8980-", "T8993C", "G8995C", "A9009G", "G9010A", "G9013-", "G9015-", "G9016-", "T9017-", "T9018-", "T9019-", "G9020-", "G9021-", "G9022-", "G9025-", "A9026-", "G9027-", "T9029-", "G9030-", "G9031-", "G9032-", "G9033-", "A9034-", "C9039T", "T9040G", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "T9060-", "A9061-", "A9062-", "G9063-", "C9064-", "A9065-", "G9066-", "C9067-", "C9068-", "G9069-", "C9070-", "T9071-", "T9074C", "C9075G"], "INT": ["E96D", "S124N"], "RT-p51": ["K39N", "Q245K", "A286T", "I326V", "R358K", "V371A", "T377L", "S379A"], "RT-p66": ["K39N", "Q245K", "A286T", "I326V", "R358K", "V371A", "T377L", "S379A", "R448K", "E449D", "T470N", "S491L", "E514D", "Q520L", "L525M"], "gp120": ["N4P", "-5K", "K18R", "D34E", "T35R", "V40I", "N57K", "T104I", "-105E", "-106A", "-108F", "-109T", "-112N", "-113T", "-114T", "-115V", "-116N", "-117V", "-118T", "-119Q", "-120E", "-121M", "-123K", "-124D", "M133V", "K141Q", "R142K", "L151P", "N159G", "N161T", "F182L", "E183D", "C190W", "C200G", "K203T", "P210Q", "K254R", "K262T", "N272S", "Q300E", "Q315D", "Q316L", "A318V", "Q319K", "T334N", "S337A", "L341I", "L343I", "-368Y", "N369P", "-370N", "T371G", "-372S", "-373M", "-375G", "-376Y", "-377T", "N379D", "G382D", "-384G", "I395V", "V402A", "Q404K", "I414V", "N434S", "S435T", "T436E", "N437-", "K472H", "A473S", "R474M"], "gp41": ["V28A", "H53N", "K90R", "N96D", "Q108Y", "D109N", "E110D", "S125N", "D129E", "D163E", "I164L", "I177V", "F188L", "L209P", "T210S", "P219L", "E224G", "R233K", "L244I", "A245V", "Q294K", "W314G", "I321V", "F329I"], "nef": ["S8N", "S9K", "I10-", "V11-", "P14Q", "R17M", "T23A", "P24E", "A25G", "H40Y", "I43V", "A53P", "C55K", "V114I", "H116N", "F120Y", "T128M", "D149S", "R151E", "E174D", "E176D", "L181M", "H193Y", "I194M", "A195V", "R196G", "E197Q", "Y202N", "Y203T"], "p1": ["S9H"], "p17": ["A15S", "R30Q", "L34I", "I61M", "P66S", "T67A", "Y79F", "K95R", "G121S"], "p2": ["-10T"], "p24": ["T110N", "T178S", "E180D", "E187D"], "p6": ["S3N", "F15L", "S23P", "S24F", "D32N", "Q35P", "P36R", "L38P", "V39S"], "p7": ["K7Q", "R33K"], "pro": ["L10I", "G16E", "K41R", "L63T", "K69N"], "rev": ["S7-", "T8S", "L13I", "R14Q", "Y28V", "T62D", "S67P", "R99G", "L103P", "D108G", "A112E"], "tat": ["N12R", "T19P", "K29I", "H54-", "P59H", "Q60P", "K63E", "I69V", "L74R", "P84S"], "vif": ["R36G", "S46C", "V51A", "K77R", "Q91L", "S118C", "N140S", "E155K", "R167K", "R181K", "E185G", "*193W"], "vpr": ["H45L", "N48Q", "I84M", "R85P"], "vpu": ["T2S", "P3S", "Q5E", "I13V", "V21I", "A27V", "R37K", "K66T", "M71G"]}, "labels": {"aa": "INT: E96D, S124N; RT-p51: K39N, Q245K, A286T, I326V, R358K, V371A, T377L, S379A; RT-p66: K39N, Q245K, A286T, I326V, R358K, V371A, T377L, S379A, R448K, E449D, T470N, S491L, E514D, Q520L, L525M; gp120: N4P, -5K, K18R, D34E, T35R, V40I, N57K, T104I, -105E, -106A, -108F, -109T, -112N, -113T, -114T, -115V, -116N, -117V, -118T, -119Q, -120E, -121M, -123K, -124D, M133V, K141Q, R142K, L151P, N159G, N161T, F182L, E183D, C190W, C200G, K203T, P210Q, K254R, K262T, N272S, Q300E, Q315D, Q316L, A318V, Q319K, T334N, S337A, L341I, L343I, -368Y, N369P, -370N, T371G, -372S, -373M, -375G, -376Y, -377T, N379D, G382D, -384G, I395V, V402A, Q404K, I414V, N434S, S435T, T436E, N437-, K472H, A473S, R474M; gp41: V28A, H53N, K90R, N96D, Q108Y, D109N, E110D, S125N, D129E, D163E, I164L, I177V, F188L, L209P, T210S, P219L, E224G, R233K, L244I, A245V, Q294K, W314G, I321V, F329I; nef: S8N, S9K, I10-, V11-, P14Q, R17M, T23A, P24E, A25G, H40Y, I43V, A53P, C55K, V114I, H116N, F120Y, T128M, D149S, R151E, E174D, E176D, L181M, H193Y, I194M, A195V, R196G, E197Q, Y202N, Y203T; p1: S9H; p17: A15S, R30Q, L34I, I61M, P66S, T67A, Y79F, K95R, G121S; p2: -10T; p24: T110N, T178S, E180D, E187D; p6: S3N, F15L, S23P, S24F, D32N, Q35P, P36R, L38P, V39S; p7: K7Q, R33K; pro: L10I, G16E, K41R, L63T, K69N; rev: S7-, T8S, L13I, R14Q, Y28V, T62D, S67P, R99G, L103P, D108G, A112E; tat: N12R, T19P, K29I, H54-, P59H, Q60P, K63E, I69V, L74R, P84S; vif: R36G, S46C, V51A, K77R, Q91L, S118C, N140S, E155K, R167K, R181K, E185G, *193W; vpr: H45L, N48Q, I84M, R85P; vpu: T2S, P3S, Q5E, I13V, V21I, A27V, R37K, K66T, M71G"}}}]}, {"name": "CRF22_01A1_NODE_0000004", "node_attrs": {"div": 0.1229, "clade_membership": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["C1235T", "G2764A", "C2909G", "A4695G", "A4696G", "A5707C", "T6287C", "A6764G", "T6766G", "G6771A", "G7782C", "A7873G", "G8885A"], "gp120": ["V126-", "R127-", "Y145H", "N304E", "S306N", "-376G"], "gp41": ["L4F", "S160T"], "p2": ["-10T"], "vpu": ["R34L"]}, "labels": {"aa": "gp120: V126-, R127-, Y145H, N304E, S306N, -376G; gp41: L4F, S160T; p2: -10T; vpu: R34L"}}, "children": [{"name": "CRF22_01A1_NODE_0000005", "node_attrs": {"div": 0.12836, "clade_membership": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["T479C", "A836G", "G1034A", "G1271T", "G1661A", "T1792C", "C2080T", "T2209C", "C2296T", "T2542C", "G2683A", "A3192G", "A3217G", "G3264A", "A3637T", "C3649T", "G3715A", "A4468G", "A4474G", "C5221T", "C5397A", "G5620C", "G5717A", "A5718G", "C6636T", "A6683C", "A6689G", "C6717T", "G6725A", "G6742A", "A6790C", "A6823T", "A6848G", "-6957A", "-6958T", "-6976G", "A6989G", "T6997G", "A7164C", "A7198G", "A7339G", "T7681C", "T7801A", "T7912C", "T8371-", "A8426G", "G8469A", "G8558A", "C8699A", "A8770T", "A8870T"], "RT-p51": ["K366R", "S379G", "R390K"], "RT-p66": ["K366R", "S379G", "R390K", "E514D"], "gp120": ["N159D", "K277Q", "I279V", "A288V", "H324Y", "I332V"], "gp41": ["N166K"], "nef": ["Y143F", "E176D"], "p24": ["E180D"], "p6": ["S23P"], "tat": ["N7K"], "vif": ["M109I", "N140S"], "vpu": ["R37K", "K66D"]}, "labels": {"aa": "RT-p51: K366R, S379G, R390K; RT-p66: K366R, S379G, R390K, E514D; gp120: N159D, K277Q, I279V, A288V, H324Y, I332V; gp41: N166K; nef: Y143F, E176D; p24: E180D; p6: S23P; tat: N7K; vif: M109I, N140S; vpu: R37K, K66D"}}, "children": [{"name": "GQ229529", "node_attrs": {"div": 0.15486, "accession": "GQ229529", "clade_membership": {"value": "CRF22_01A1"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CM_3097MN"}, "LANL_subtype": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["A417C", "C482T", "C531T", "A562G", "A581G", "A678G", "A699G", "G702-", "G703-", "A704-", "A705-", "G706-", "C707-", "A708-", "G709-", "C710-", "A711-", "G712-", "C713-", "A715-", "T734G", "G738A", "A785G", "A812G", "T852A", "A891T", "T892C", "C1091T", "C1136T", "A1259G", "A1277G", "A1339G", "C1385T", "T1422C", "A1452C", "G1713A", "C1714T", "T1749C", "C1752T", "-1754C", "-1755C", "-1756C", "C1789T", "T1796C", "C1831T", "G1835A", "C2106A", "A2113C", "G2156A", "T2171C", "A2212T", "G2273A", "T2281C", "A2419G", "G2422A", "C2464T", "G2473A", "C2499T", "G2630A", "A2665G", "T2770C", "C2779T", "C2828A", "C2839A", "C2910G", "A2937G", "C3031A", "A3091G", "A3094G", "A3136G", "T3181A", "G3221T", "T3399C", "G3409A", "G3431T", "T3472A", "A3538G", "T3566A", "T3644A", "A3646T", "T3721A", "G3769A", "G3787A", "C3808A", "A3866G", "G3891A", "C3892T", "A3907G", "C3943T", "G3952A", "A4048G", "A4076C", "A4195T", "G4226A", "T4585A", "A4677G", "C4728G", "A4736G", "T4805G", "A4816G", "T4868C", "G4913T", "T4914C", "A4995G", "G5036A", "C5041T", "A5042G", "A5045G", "G5049A", "T5072C", "T5147C", "A5431G", "A5444G", "T5448C", "T5453A", "G5471T", "A5495C", "A5537G", "A5548C", "C5559T", "G5561A", "A5574G", "A5622T", "C5625T", "T5687C", "T5708A", "C5727T", "-5791A", "A5804C", "A5805G", "-5809G", "-5810T", "-5811G", "T5813-", "G5814-", "G5815-", "A5816-", "A5817-", "A5818-", "G5821-", "G5822-", "G5823-", "A5824-", "C5834A", "T5844G", "-5864C", "-5865A", "-5866A", "A5867-", "A5868-", "C5869-", "T5884C", "G5907A", "C5920T", "C5922T", "T5956C", "T6007C", "T6025A", "T6030A", "A6092G", "C6148T", "T6160C", "-6167G", "-6168A", "-6169G", "-6170G", "-6171T", "-6172T", "-6173A", "-6174C", "-6175A", "-6177A", "-6180A", "C6183A", "A6185T", "-6193T", "-6195A", "A6197T", "-6198C", "-6199T", "-6201C", "-6203C", "-6204A", "-6205A", "-6207A", "-6208A", "-6209A", "-6210C", "-6211A", "-6212G", "C6213T", "-6215T", "-6216T", "-6217A", "-6219G", "-6220G", "-6221G", "-6222A", "-6223A", "G6224A", "-6225C", "-6226T", "-6229T", "A6253G", "A6273G", "G6274A", "G6317A", "A6329G", "A6339C", "C6412T", "A6457T", "A6464C", "A6505G", "A6514C", "G6575C", "C6601T", "A6623C", "T6649A", "C6654A", "T6660C", "A6730T", "G6732A", "T6799A", "C6807T", "A6809G", "-6824T", "A6840C", "A6858G", "T6895C", "A6905G", "C6937T", "C6949T", "-6956T", "-6961A", "-6962A", "-6963A", "-6964T", "A6965-", "C6966-", "T6967-", "-6968G", "-6970C", "-6972G", "-6973C", "-6975T", "-6977A", "-6978C", "-6979A", "-6980G", "-6981G", "C6984T", "-6985G", "-6999G", "-7000C", "G7004-", "C7006-", "A7007-", "C7008-", "T7009-", "T7014C", "G7058A", "T7095A", "A7100C", "G7101A", "G7106A", "A7107T", "G7108T", "C7124T", "C7127T", "G7147T", "A7152G", "A7155C", "C7156A", "G7158A", "C7161A", "A7162G", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "T7171-", "C7250T", "A7268G", "G7282A", "T7313C", "T7408G", "C7561T", "A7629C", "G7701T", "T7702G", "C7773G", "G7818A", "T7825C", "A7882G", "A7936C", "A7938C", "C7939G", "T7950C", "C7960A", "A7992G", "A8023C", "G8134C", "A8143G", "A8173G", "G8231A", "C8277T", "T8279G", "A8297G", "T8366G", "A8367-", "G8368-", "C8369-", "A8370-", "A8372-", "G8373-", "G8375-", "A8403C", "G8404A", "C8406A", "A8408C", "G8415C", "G8486A", "G8508A", "T8509C", "A8519C", "G8554C", "A8560G", "G8561A", "A8564C", "C8568T", "T8701A", "C8727T", "A8809G", "C8840T", "G8846A", "T9060A", "C9078T", "A9082G", "T9108-"], "INT": ["D11E", "I31V", "S39N", "I101L", "D270E"], "RT-p51": ["P4H", "E6D", "V21I", "K39N", "V60I", "T135I", "V179I", "A200T", "Q245K", "D248E", "A272G", "K281R", "D312E", "A376S", "V435A"], "RT-p66": ["P4H", "E6D", "V21I", "K39N", "V60I", "T135I", "V179I", "A200T", "Q245K", "D248E", "A272G", "K281R", "D312E", "A376S", "V435A", "A446S", "S491T", "L517I"], "gp120": ["N4Q", "T23I", "N57K", "V59D", "I80V", "-105E", "-106V", "-108N", "-109N", "-110N", "-111S", "-112T", "-113N", "-114N", "-115S", "-116T", "-117Q", "-118N", "-119N", "-120S", "-121T", "-122V", "-123L", "-124G", "-126T", "-127D", "K140R", "S162T", "K201N", "K204Q", "E241Q", "I257L", "N265K", "T267N", "I269T", "A291T", "R292S", "G293D", "D294I", "A318V", "Q319E", "E323N", "K329T", "N335S", "R351G", "-368Y", "-370N", "T371G", "-372S", "-373M", "-377L", "N379D", "N381K", "-383N", "T385-", "I387T", "V402T", "I414K", "R416Q", "E418I", "N432V", "K472E"], "gp41": ["F4L", "D109A", "S133M", "T157S", "R172K", "I193M", "S212T", "L216P", "D230G", "A310T", "A325V", "I332V"], "nef": ["S8R", "S9-", "I10-", "V11-", "R21Q", "Q22N", "A25P", "V56T", "E59D", "R71T", "Q73R", "F120Y", "P129S", "N156S", "M168I"], "p17": ["K28Q", "P66S", "K76R", "T115A", "T122A", "G123-", "S124-", "S125-", "S126-", "K127-"], "p2": ["T10P"], "p24": ["V3M", "S41T", "M54S", "K203R"], "p6": ["A12I", "L38S", "S51L"], "pro": ["V13I"], "rev": ["T8A", "E11D", "A15V", "V16I", "K20R", "K30H", "P31A", "I59L", "G96Q", "R99G", "D108G", "I109V"], "tat": ["T19A", "N23S", "F26Y", "W32L", "K40T", "H54R", "T58P", "S62N", "Q76P", "A77R", "S81P", "P84Q"], "vif": ["I31V", "H48D", "H73Q", "K77R", "Y110H", "T137A", "A152V", "A155T"], "vpr": ["Y15H"], "vpu": ["T2P", "L34Q", "D60E", "T61L", "D62A", "E63T", "A65V", "L67F", "-68D", "V69H", "E70W", "M71V", "N73-", "F74-", "D75-", "P76-", "W77-", "V78-", "G79-"]}, "labels": {"aa": "INT: D11E, I31V, S39N, I101L, D270E; RT-p51: P4H, E6D, V21I, K39N, V60I, T135I, V179I, A200T, Q245K, D248E, A272G, K281R, D312E, A376S, V435A; RT-p66: P4H, E6D, V21I, K39N, V60I, T135I, V179I, A200T, Q245K, D248E, A272G, K281R, D312E, A376S, V435A, A446S, S491T, L517I; gp120: N4Q, T23I, N57K, V59D, I80V, -105E, -106V, -108N, -109N, -110N, -111S, -112T, -113N, -114N, -115S, -116T, -117Q, -118N, -119N, -120S, -121T, -122V, -123L, -124G, -126T, -127D, K140R, S162T, K201N, K204Q, E241Q, I257L, N265K, T267N, I269T, A291T, R292S, G293D, D294I, A318V, Q319E, E323N, K329T, N335S, R351G, -368Y, -370N, T371G, -372S, -373M, -377L, N379D, N381K, -383N, T385-, I387T, V402T, I414K, R416Q, E418I, N432V, K472E; gp41: F4L, D109A, S133M, T157S, R172K, I193M, S212T, L216P, D230G, A310T, A325V, I332V; nef: S8R, S9-, I10-, V11-, R21Q, Q22N, A25P, V56T, E59D, R71T, Q73R, F120Y, P129S, N156S, M168I; p17: K28Q, P66S, K76R, T115A, T122A, G123-, S124-, S125-, S126-, K127-; p2: T10P; p24: V3M, S41T, M54S, K203R; p6: A12I, L38S, S51L; pro: V13I; rev: T8A, E11D, A15V, V16I, K20R, K30H, P31A, I59L, G96Q, R99G, D108G, I109V; tat: T19A, N23S, F26Y, W32L, K40T, H54R, T58P, S62N, Q76P, A77R, S81P, P84Q; vif: I31V, H48D, H73Q, K77R, Y110H, T137A, A152V, A155T; vpr: Y15H; vpu: T2P, L34Q, D60E, T61L, D62A, E63T, A65V, L67F, -68D, V69H, E70W, M71V, N73-, F74-, D75-, P76-, W77-, V78-, G79-"}}}, {"name": "MT349410", "node_attrs": {"div": 0.17563, "accession": "MT349410", "clade_membership": {"value": "CRF22_01A1"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10CMLB071"}, "LANL_subtype": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["T176G", "G178A", "T182G", "C189T", "C193A", "-304A", "-305A", "G354A", "A399C", "A426T", "C456T", "A458G", "C467T", "C471G", "A509G", "A512G", "A521G", "A541G", "G579A", "A592T", "G615A", "A654T", "C679A", "G686A", "C707T", "-714A", "A715G", "-716T", "A752G", "G774T", "T782A", "T788C", "G791A", "G810A", "A818G", "A926G", "A932G", "T944C", "G980A", "A1089G", "C1136A", "G1184A", "A1208G", "T1229C", "G1232A", "T1235C", "C1316T", "T1329A", "G1430A", "T1481C", "G1487A", "A1587C", "G1664A", "T1724G", "G1725T", "A1736C", "T1741A", "A1742G", "-1746C", "-1747C", "-1748C", "-1754A", "G1757-", "C1786T", "T1791C", "A1793T", "G1845A", "G1852A", "A1857G", "G1963A", "A2007G", "T2071C", "A2161G", "A2212G", "G2215A", "G2389A", "T2392C", "A2395G", "T2452G", "T2453C", "A2461G", "A2519G", "G2524A", "G2530A", "C2589T", "C2596T", "T2602G", "T2620C", "A2641G", "A2682G", "A2693G", "A2699G", "G2707C", "T2716A", "G2727A", "C2728A", "A2788G", "G2837A", "G2843A", "A2844C", "G2909C", "A2920G", "G2929A", "G2980A", "T3002C", "C3023T", "A3071G", "A3124G", "A3190T", "G3208A", "G3220A", "A3229G", "G3307T", "G3316A", "A3382G", "C3391T", "G3398C", "G3442A", "T3492C", "G3508A", "A3538T", "C3567T", "G3616A", "A3622G", "G3630A", "A3736G", "T3755G", "T3778C", "A3896G", "T3904C", "A3982G", "G4131C", "T4216C", "T4240C", "G4243A", "T4247C", "A4270G", "A4285G", "A4391T", "C4396T", "A4555G", "T4655C", "A4658G", "G4689A", "C4715T", "A4721C", "A4722T", "C4724T", "G4727A", "G4774A", "T4776A", "G4786A", "C4826T", "G4856A", "G4864A", "G4878A", "T4883C", "C4890A", "T4891C", "G4913A", "C4925A", "C4943T", "A4944G", "A4976C", "G4981T", "T4982A", "C5006T", "A5059G", "T5062G", "G5075A", "G5114A", "G5128A", "C5146A", "A5154C", "T5197C", "C5213A", "C5214T", "C5215A", "C5227T", "C5234G", "G5359C", "C5384T", "T5430C", "G5437C", "T5454C", "A5499G", "A5534G", "A5547C", "G5556C", "G5557A", "A5581C", "C5611A", "C5612A", "A5613C", "G5628T", "C5641A", "G5643A", "A5644G", "T5688A", "G5700A", "A5711G", "T5736G", "A5746C", "G5747A", "-5791G", "A5805C", "-5819A", "-5820T", "G5839A", "C5869T", "C5923T", "A5957C", "T5968C", "A5983C", "A5995G", "C6010T", "A6020G", "G6029A", "T6030C", "G6076A", "T6163-", "A6164-", "C6165-", "C6166-", "A6176-", "T6178-", "A6179-", "A6182G", "C6186A", "T6187G", "A6188G", "C6190T", "-6193C", "A6194T", "-6195T", "A6200-", "C6202-", "A6206-", "C6213-", "A6214-", "G6218-", "G6224-", "G6227-", "A6228-", "G6230-", "T6231-", "A6232-", "A6233-", "G6234-", "A6235-", "A6236-", "A6237-", "C6238-", "T6239-", "G6240-", "T6241-", "T6242-", "C6243-", "T6244-", "T6245-", "T6246-", "T6247-", "A6248-", "A6249-", "T6250-", "A6251-", "T6252-", "A6253-", "A6254-", "C6255-", "C6256-", "A6257-", "C6258-", "A6259-", "G6260-", "A6261-", "A6262-", "C6263-", "T6264-", "A6265-", "A6266-", "G6267-", "A6268-", "G6269-", "A6270-", "T6271-", "A6272-", "A6273-", "G6274-", "A6275-", "A6276-", "A6277-", "A6278-", "G6279-", "G6280-", "A6281-", "A6282-", "A6283-", "G6284-", "T6285-", "A6286-", "C6287-", "A6288-", "T6289-", "T6290-", "C6291-", "A6292-", "C6293-", "C6305G", "T6310C", "G6323A", "A6330G", "A6339T", "G6466A", "G6547A", "A6553G", "T6562C", "A6617C", "C6637T", "A6638G", "G6640A", "A6659G", "A6669G", "A6691G", "C6713A", "A6714G", "A6715T", "C6718A", "T6724C", "C6726G", "C6752A", "A6753T", "A6754G", "C6758T", "A6773G", "A6774G", "G6779C", "A6796G", "C6797T", "A6805C", "G6806T", "A6809C", "A6814G", "G6819A", "A6821G", "A6822G", "A6825-", "T6826-", "G6828A", "G6829T", "-6830T", "-6831G", "-6832G", "-6833A", "-6834A", "-6835A", "C6859T", "T6860C", "C6861A", "C6862T", "T6875A", "C6881A", "T6883A", "T6932A", "G6935A", "G6936A", "C6937A", "-6956C", "-6961T", "-6962G", "-6963G", "-6964C", "-6968T", "-6970G", "A6971C", "-6972A", "-6973T", "-6975C", "G6982-", "T6983-", "C6984-", "G6994T", "A6996C", "G6998-", "-7005G", "C7020T", "G7033A", "A7040G", "A7044G", "T7045A", "C7059T", "A7063G", "A7074T", "A7149C", "A7151G", "G7158C", "T7159A", "G7160A", "A7268C", "A7269C", "G7270T", "G7289C", "G7315T", "C7324T", "C7328A", "A7373G", "A7375G", "C7411T", "G7513T", "A7533G", "T7609C", "T7622A", "G7633C", "G7640A", "A7669C", "G7688A", "C7723T", "T7757C", "G7759T", "T7769G", "C7782A", "C7792T", "A7840T", "A7874C", "T7921C", "A7931G", "C7932T", "A7938G", "A7942G", "C7959T", "G7995A", "A7997G", "C7998A", "A8011C", "G8019A", "A8032T", "T8047C", "C8065T", "C8080A", "A8086G", "C8095A", "C8103T", "C8106T", "C8149G", "T8159G", "G8161A", "C8167T", "G8171A", "A8194G", "C8196A", "A8207T", "G8219A", "T8221C", "G8280T", "G8329A", "G8335A", "G8354A", "G8365A", "T8366C", "C8369A", "-8371A", "-8374C", "G8375A", "C8382G", "C8383A", "T8384A", "C8385G", "G8398A", "A8400C", "T8411C", "T8414C", "G8415A", "T8440C", "A8446G", "T8456G", "C8500A", "T8501A", "G8503C", "G8528A", "G8534C", "T8539G", "A8540G", "A8564T", "G8590C", "T8600C", "T8645A", "A8647T", "A8652C", "C8661A", "C8684T", "C8741T", "A8750T", "T8756C", "A8795C", "G8802T", "T8813C", "G8852A", "G8861A", "G8864T", "G8875A", "A8876G", "G8902C", "G8917A", "A8924C", "G8945T", "A8947T", "C8951T", "A8954G", "G8955A", "C8990T", "A8991G", "C9068T", "C9075T", "T9084A", "G9085A"], "INT": ["N41D", "S119T", "T206S"], "RT-p51": ["I142V", "T165I", "D169E", "E196G", "I202V", "E204D", "S211K", "D248N", "D250T", "A272P", "I326V", "E404D", "V435L"], "RT-p66": ["I142V", "T165I", "D169E", "E196G", "I202V", "E204D", "S211K", "D248N", "D250T", "A272P", "I326V", "E404D", "V435L", "V466A", "S491L", "R512K", "S554A"], "gp120": ["K18R", "T35P", "I56V", "V59T", "T104A", "E125-", "N128-", "C129-", "S130-", "F131-", "N132-", "M133-", "T134-", "T135-", "E136-", "L137-", "R138-", "D139-", "K140-", "K141-", "R142-", "V144A", "H145N", "S146F", "L147I", "L151V", "K155E", "D157-", "N160I", "N161G", "T255P", "K262E", "I269V", "N272S", "Q287S", "A291R", "Q300M", "H302Y", "K307G", "E309Q", "Q315Y", "A318S", "R322K", "E323G", "-326K", "-327N", "N328-", "S336H", "L341I", "L343I", "S360T", "G361K", "-368H", "-370G", "-372W", "-373H", "-375N", "G376D", "-377T", "N378T", "T380G", "N381-", "G382-", "P389L", "I396V", "N397R", "Y407F", "N432G", "N433T", "N434D", "S435N", "N437T", "K472P", "E479Q"], "gp41": ["L9I", "I24V", "K77R", "S107T", "D109E", "E110D", "D113N", "K122N", "D129N", "S156A", "T160N", "I191L", "T210V", "P219L", "R231K", "T232D", "S239N", "A267V", "A268V", "W286G", "V290I", "T298N", "T302S", "A306T", "G326F"], "nef": ["S8N", "S9R", "I10K", "V11A", "P14E", "Q15E", "R19K", "I20L", "A25T", "V33A", "Q35R", "D38E", "A53E", "S54T", "E64D", "G83A", "Y102F", "K104Q", "Q107K", "R151S", "E154*", "M173I", "E174D", "R178K", "S187T", "R192K", "M198L", "E201D", "Y202F"], "p17": ["V7I", "M31L", "L46V", "K69R", "V82I", "Y86F", "V94I", "I107L", "T115K", "K127S"], "p24": ["V15L", "V27I", "M83I", "S120G", "S200T"], "p6": ["F15L", "G16W", "E19D", "I21K", "P36L", "L38P"], "p7": ["K41Q"], "pro": ["G16E", "K20R", "K70R"], "rev": ["S7G", "E11A", "R14T", "Y28C", "R32G", "N50R", "I55L", "T62S", "S67P", "L73F", "L78I", "R80G", "L83I", "Q101E", "V104G", "E105K", "P107S", "N116E"], "tat": ["P3L", "A21P", "K53R", "Q60H", "G61S", "I69L", "P75S", "Q78R", "P84S"], "vif": ["A35T", "E45D", "S46C", "R63K", "L64I", "R67K", "R93K", "V98I", "L102T", "D113E", "I120V", "R130S", "S132I", "K158R", "I159R", "R181K", "P187H", "N190H"], "vpr": ["A4T", "E17A", "P37I", "Q44E", "R85P"], "vpu": ["T2N", "W7C", "L12I", "I13V", "A27V", "K35R", "R47Q", "D66N", "M71N", "V78I"]}, "labels": {"aa": "INT: N41D, S119T, T206S; RT-p51: I142V, T165I, D169E, E196G, I202V, E204D, S211K, D248N, D250T, A272P, I326V, E404D, V435L; RT-p66: I142V, T165I, D169E, E196G, I202V, E204D, S211K, D248N, D250T, A272P, I326V, E404D, V435L, V466A, S491L, R512K, S554A; gp120: K18R, T35P, I56V, V59T, T104A, E125-, N128-, C129-, S130-, F131-, N132-, M133-, T134-, T135-, E136-, L137-, R138-, D139-, K140-, K141-, R142-, V144A, H145N, S146F, L147I, L151V, K155E, D157-, N160I, N161G, T255P, K262E, I269V, N272S, Q287S, A291R, Q300M, H302Y, K307G, E309Q, Q315Y, A318S, R322K, E323G, -326K, -327N, N328-, S336H, L341I, L343I, S360T, G361K, -368H, -370G, -372W, -373H, -375N, G376D, -377T, N378T, T380G, N381-, G382-, P389L, I396V, N397R, Y407F, N432G, N433T, N434D, S435N, N437T, K472P, E479Q; gp41: L9I, I24V, K77R, S107T, D109E, E110D, D113N, K122N, D129N, S156A, T160N, I191L, T210V, P219L, R231K, T232D, S239N, A267V, A268V, W286G, V290I, T298N, T302S, A306T, G326F; nef: S8N, S9R, I10K, V11A, P14E, Q15E, R19K, I20L, A25T, V33A, Q35R, D38E, A53E, S54T, E64D, G83A, Y102F, K104Q, Q107K, R151S, E154*, M173I, E174D, R178K, S187T, R192K, M198L, E201D, Y202F; p17: V7I, M31L, L46V, K69R, V82I, Y86F, V94I, I107L, T115K, K127S; p24: V15L, V27I, M83I, S120G, S200T; p6: F15L, G16W, E19D, I21K, P36L, L38P; p7: K41Q; pro: G16E, K20R, K70R; rev: S7G, E11A, R14T, Y28C, R32G, N50R, I55L, T62S, S67P, L73F, L78I, R80G, L83I, Q101E, V104G, E105K, P107S, N116E; tat: P3L, A21P, K53R, Q60H, G61S, I69L, P75S, Q78R, P84S; vif: A35T, E45D, S46C, R63K, L64I, R67K, R93K, V98I, L102T, D113E, I120V, R130S, S132I, K158R, I159R, R181K, P187H, N190H; vpr: A4T, E17A, P37I, Q44E, R85P; vpu: T2N, W7C, L12I, I13V, A27V, K35R, R47Q, D66N, M71N, V78I"}}}]}, {"name": "CRF22_01A1_NODE_0000006", "node_attrs": {"div": 0.12513, "clade_membership": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["-716A", "A1226G", "-1746T", "-1747C", "-1748C", "A2566G", "A2579T", "A3654T", "-5819T", "-5820G", "A6191-", "A6192-", "A6197-", "-6212A", "-6215A", "-6216T", "A6613C", "G6969-", "-6979A", "-6980G", "-6985A", "A7148G", "C7156T", "G7315T", "G7807A", "-8374T", "C8531T", "G8739A", "G8861A"], "RT-p51": ["S162C"], "RT-p66": ["S162C", "Q520L"], "gp120": ["K18R", "Q315H"], "gp41": ["S212N", "G326W"], "nef": ["I43V", "V133I"], "tat": ["P3L", "A77T"]}, "labels": {"aa": "RT-p51: S162C; RT-p66: S162C, Q520L; gp120: K18R, Q315H; gp41: S212N, G326W; nef: I43V, V133I; tat: P3L, A77T"}}, "children": [{"name": "CRF22_01A1_NODE_0000007", "node_attrs": {"div": 0.13174999999999998, "clade_membership": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["G706A", "G738A", "C1169T", "C1211A", "G1564A", "G1586C", "G1657A", "A2518G", "A3165G", "A3217G", "G3220A", "A3224T", "C3225T", "C3232A", "T3349C", "G3431T", "G3679A", "C3892T", "T4201C", "G4693A", "C4715T", "G4774A", "T4973C", "C5050A", "G5179A", "A5305C", "C5432A", "G5493A", "A5685G", "C5727A", "G5737A", "A6015G", "-6177A", "T6178G", "-6180C", "-6219A", "-6220A", "-6221A", "-6222T", "-6225A", "C6238T", "G6279A", "C6427T", "C6548T", "A6599C", "G6631A", "G6693A", "A6821G", "-6824C", "A6910G", "-6968G", "-6969A", "-6970C", "-6977A", "A6995G", "C7059T", "C7161A", "T7555C", "A7657G", "T7913C", "G8050A", "C8065T", "T8159G", "T8176C", "T8215G", "G8239A", "T8281G", "A8915G"], "RT-p51": ["D291E", "K357R", "T377L"], "RT-p66": ["D291E", "K357R", "T377L", "A446S"], "gp120": ["Q54R", "-127K", "R142K", "K155E", "I249L", "R280H", "D294E", "-373N", "-375T", "G376E"], "gp41": ["L277R", "W286G"], "nef": ["A25V", "M173I"], "p1": ["S9N"], "p7": ["R33K"], "tat": ["T19K"], "vif": ["R36K", "R63K", 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"A7997G", "C7998G", "T8016C", "A8032G", "C8044A", "G8061T", "C8062G", "C8063A", "C8080A", "C8092A", "A8093G", "G8107A", "T8164C", "G8171A", "T8172C", "A8207T", "A8228G", "A8233G", "A8341G", "G8349A", "G8350A", "A8363G", "G8393A", "A8402C", "A8407G", "T8411A", "T8477C", "G8499C", "G8516A", "A8525G", "G8528A", "C8552T", "G8558A", "G8561A", "G8590C", "T8594C", "C8640A", "A8642G", "C8675T", "T8690C", "G8738A", "T8757C", "T8758C", "G8761C", "A8770T", "T8786G", "A8793G", "G8794T", "A8795G", "A8803G", "A8808G", "G8864T", "A8874G", "A8876C", "A8885G", "G8902C", "A8922G", "A8971G", "C8972T", "C8990T"], "INT": ["I31V", "I50M", "I113V", "T218I", "R284G"], "RT-p51": ["E6D", "T11Q", "K49R", "Y121H", "G123D", "A173T", "N175Y", "P243A", "Q245E", "D248E", "E297K", "D312E", "I329V", "S379A", "K388R", "V435I"], "RT-p66": ["E6D", "T11Q", "K49R", "Y121H", "G123D", "A173T", "N175Y", "P243A", "Q245E", "D248E", "E297K", "D312E", "I329V", "S379A", "K388R", "V435I", "N447S", "R461K"], "gp120": ["N4-", "-5K", "R18K", "D21E", "N57E", "M67I", "N71K", "K93Q", "N102K", "-105A", "-106N", "-122E", "-123I", "-124N", "-126I", "K141Q", "L151V", "N160I", "N161S", "S162E", "V226M", "I269V", "S278G", "I281M", "Q287K", "A288V", "R292Q", "H302Y", "W325Y", "N335K", "-368N", "-370D", "-372V", "-377N", "N379D", "I387T", "P389Q", "I414V", "L424I", "N433D", "N434S", "T436-", "R448K", "E479Q"], "gp41": ["V2I", "V7F", "I24L", "S42N", "H53Q", "S107T", "D109K", "S133G", "L152F", "T157N", "R172K", "I193V", "T210V", "T232G", "V238A", "D247E", "C253L", "L254I", "F263L", "I264V", "V290T", "T302S", "I309V"], "nef": ["G3N", "Q22R", "A53P", "G83A", "L100M", "F139P", "G140A", "Y143F", "R151V", "E154G", "N156D", "E174D", "R178G", "S187T", "I194V", "M198L"], "p17": ["M31L", "E42D", "A54G", "Q58L", "T67A", "S72T", "L75I", "S124N", "S125N", "K127Q"], "p24": ["V3M", "V15L", "M83V"], "p6": ["S14N", "F15W", "P36V"], "p7": ["K7N"], "pro": ["L10I", "N35D", "L63S", "K69Q"], "rev": ["R14G", "V16I", "R17K", "I18A", "Y28C", "N50R", "T62A", "A68T", "P72D", "L73F", "L78I", "H82S", "E87K", "V104G", "S106P"], "tat": ["E9D", "C34R", "L39V", "Q60R", "S62N", "D64G", "P75S"], "vif": ["H27Y", "Y30H", "G37E", "F39C", "E45D", "V51I", "R67K", "H83N", "V85A", "K92G", "S95N", "V98I", "D101E", "M109I", "D117E", "I128V", "S132R", "T137A", "E155G", "P156T", "G182D"], "vpr": ["Y15H", "H40Y", "H45F", "I61T", "Q66H", "S96P"], "vpu": ["T2I", "P3S", "L16V", "V21I", "A27V", "Q36E", "D40E", "R41K", "E44K", "A50E", "L82M"]}, "labels": {"aa": "INT: I31V, I50M, I113V, T218I, R284G; RT-p51: E6D, T11Q, K49R, Y121H, G123D, A173T, N175Y, P243A, Q245E, D248E, E297K, D312E, I329V, S379A, K388R, V435I; RT-p66: E6D, T11Q, K49R, Y121H, G123D, A173T, N175Y, P243A, Q245E, D248E, E297K, D312E, I329V, S379A, K388R, V435I, N447S, R461K; gp120: N4-, -5K, R18K, D21E, N57E, M67I, N71K, K93Q, N102K, -105A, -106N, -122E, -123I, -124N, -126I, K141Q, L151V, N160I, N161S, S162E, V226M, I269V, S278G, I281M, Q287K, A288V, R292Q, H302Y, W325Y, N335K, -368N, -370D, -372V, -377N, N379D, I387T, P389Q, I414V, L424I, N433D, N434S, T436-, R448K, E479Q; gp41: V2I, V7F, I24L, S42N, H53Q, S107T, D109K, S133G, L152F, T157N, R172K, I193V, T210V, T232G, V238A, D247E, C253L, L254I, F263L, I264V, V290T, T302S, I309V; nef: G3N, Q22R, A53P, G83A, L100M, F139P, G140A, Y143F, R151V, E154G, N156D, E174D, R178G, S187T, I194V, M198L; p17: M31L, E42D, A54G, Q58L, T67A, S72T, L75I, S124N, S125N, K127Q; p24: V3M, V15L, M83V; p6: S14N, F15W, P36V; p7: K7N; pro: L10I, N35D, L63S, K69Q; rev: R14G, V16I, R17K, I18A, Y28C, N50R, T62A, A68T, P72D, L73F, L78I, H82S, E87K, V104G, S106P; tat: E9D, C34R, L39V, Q60R, S62N, D64G, P75S; vif: H27Y, Y30H, G37E, F39C, E45D, V51I, R67K, H83N, V85A, K92G, S95N, V98I, D101E, M109I, D117E, I128V, S132R, T137A, E155G, P156T, G182D; vpr: Y15H, H40Y, H45F, I61T, Q66H, S96P; vpu: T2I, P3S, L16V, V21I, A27V, Q36E, D40E, R41K, E44K, A50E, L82M"}}}]}, {"name": "CRF22_01A1_NODE_0000008", "node_attrs": {"div": 0.12714, "clade_membership": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["A606C", "G1078C", "G3398A", "T3542C", "G5005A", "G5236A", "C5384T", "-6173A", "-6180A", "C6183T", "-6209A", "T6322-", "G6336A", "A6339G", "A6340T", "C6881A", "A6971-", "A6974-", "-6981G", "G7101A", "G7275A"], "RT-p51": ["V435I"], "RT-p66": ["V435I", "Y483H"], "gp120": ["D21N", "-106A", "-110T", "N312K", "L343I", "V402A", "N432D", "R474K"], "nef": ["N52-"], "p24": ["G116A"], "vpu": ["Q5E"]}, "labels": {"aa": "RT-p51: V435I; RT-p66: V435I, Y483H; gp120: D21N, -106A, -110T, N312K, L343I, V402A, N432D, R474K; nef: N52-; p24: G116A; vpu: Q5E"}}, "children": [{"name": "AY371165", "node_attrs": {"div": 0.15966, "accession": "AY371165", "clade_membership": {"value": "CRF22_01A1"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CM_1867LE"}, "LANL_subtype": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "G424A", "G428A", "G455A", "G480A", "G495A", "G498A", "C535T", "C558A", "A571T", "A675C", "G697A", "A701G", "G706A", "A711G", "-714A", "G717A", "C722T", "A725C", "G740A", "G803A", "A891T", "T892G", "G893T", "T944C", "G980A", "T1097A", "T1100C", "T1148C", "A1278C", "C1280T", "A1292G", "T1296C", "A1397G", "A1448C", "T1451G", "C1550T", "A1607G", "C1610A", "A1614C", "T1653C", "T1682C", "G1685A", "G1687A", "C1693T", "A1715G", "G1720A", "G1727A", "T1729G", "A1742G", "G1794A", "G1852A", "T1978C", "C1985A", "T1986C", "C2127A", "T2209C", "C2420T", "G2422A", "G2463A", "A2482G", "T2602C", "A2626C", "T2659C", "T2689C", "G2704A", "G2710A", "T2719C", "G2837A", "A2842G", "G2847A", "C2848T", "G2909C", "A2920G", "A2925G", "G2926A", "A2938G", "G2969A", "G2972A", "G3019A", "A3070G", "C3100A", "A3154G", "A3164C", "A3167G", "T3181A", "A3204C", "C3225G", "A3226G", "G3230T", "G3264A", "A3283G", "G3491A", "A3520G", "A3538G", "A3682C", "A3709G", "T3751C", "G3787A", "C3823T", "G3841A", "G3869A", "C3908T", "C3977T", "G3991A", "C3994A", "A4048G", "A4076C", "A4087G", "C4135T", "C4138T", "C4258T", "A4270G", "A4369G", "G4673A", "G4697A", "A4721G", "G4727A", "T4835G", "A4861G", "G4870A", "C4875T", "T4914C", "G4949A", "C4977A", "T4982A", "A5059G", "T5062C", "A5099G", "A5155G", "T5162C", "A5185G", "C5213A", "T5245C", "G5272A", "G5362A", "G5375A", "C5398T", "G5403C", "T5415C", "C5432A", "C5445T", "T5448C", "T5466C", "T5467A", "A5537G", "G5561A", "G5565A", "A5575G", "G5599T", "T5602A", "C5611T", "A5685G", "G5686T", "G5700A", "A5711G", "-5791A", "A5824G", "G5915A", "T5932C", "C5989T", "A6023G", "A6092G", "T6134C", "T6142C", "-6174G", "-6175G", "A6176G", "-6177C", "A6182T", "C6186A", "A6188G", "A6194-", "T6196-", "-6201C", "-6203G", "-6204G", "-6205G", "-6207A", "-6208C", "-6210A", "-6211T", "-6217G", "-6219A", "-6220A", "-6221A", "-6222A", "-6223G", "-6225T", "-6226A", "G6230-", "T6231-", "A6268G", "A6276C", "A6303T", "G6317A", "-6322A", "T6328C", "A6333G", "G6391A", "A6464C", "A6488G", "A6553G", "C6563T", "G6577A", "C6586T", "C6613T", "A6620C", "A6638G", "T6658C", "A6659C", "G6693A", "G6732A", "T6735G", "G6764A", "G6766T", "A6771G", "C6800A", "A6809C", "A6818G", "A6822G", "A6825-", "T6826-", "G6828A", "G6829T", "-6830T", "-6831G", "-6832G", "-6833A", "-6834A", "-6835C", "C6925T", "T6932G", "G6935A", "T6946C", "C6949T", "A6959-", "A6960-", "-6963G", "-6964G", "T6967C", "-6999A", "-7000C", "A7002G", "-7005A", "G7108A", "C7153T", "G7160A", "A7221T", "G7282A", "G7291A", "G7477A", "C7579T", "G7628A", "A7629C", "T7642G", "C7690A", "A7698T", "A7711G", "A7713C", "T7769G", "C7775T", "A7861T", "A7874C", "T7877G", "T7879C", "T7912C", "T7921C", "T7929A", "C7932T", "G7995A", "G8019A", "T8113A", "A8130G", "G8170A", "G8182A", "A8207T", "C8213T", "G8216A", "G8219A", "T8256C", "G8267A", "C8268T", "G8280T", "T8288C", "C8296T", "T8323C", "A8370T", "G8388A", "A8399G", "A8402G", "A8426C", "A8455C", "T8456C", "A8471G", "A8497G", "T8509C", "G8528A", "G8554A", "A8584T", "G8588A", "G8604A", "A8652C", "C8661A", "C8688A", "C8699A", "C8727T"], "INT": ["M22I", "V32I", "I101L"], "RT-p51": ["T11K", "G123D", "E177D", "A200T", "D248N", "S251N", "A272P", "K277R", "V292I", "V293I", "D335E", "K357Q", "R358G", "E370A", "T377R", "S379C", "R390K"], "RT-p66": ["T11K", "G123D", "E177D", "A200T", "D248N", "S251N", "A272P", "K277R", "V292I", "V293I", "D335E", "K357Q", "R358G", "E370A", "T377R", "S379C", "R390K", "V466I", "E529D"], "gp120": ["N57D", "I80V", "-105R", "-107N", "-108N", "-109A", "-111G", "-112N", "-113N", "-114T", "-115S", "-116E", "-121M", "-122E", "-123K", "-124V", "-126R", "M133I", "K141T", "K150M", "D157R", "N158E", "N159D", "K204Q", "K212E", "I256L", "V261A", "K262E", "I269L", "R280H", "G293D", "D294R", "E304N", "N306S", "Q316K", "R322G", "E323R", "H324Y", "-327N", "S360A", "G361S", "N369-", "T374-", "-377S", "G382D", "-383S", "-384D", "R416K", "Y456F"], "gp41": ["D109T", "D113E", "D129E", "Y132F", "E137A", "S156A", "I191L", "S192A", "L209H", "T210I", "R231K", "S239N", "L277S", "T302S", "L304F", "D305N", "A306T", "V318A", "A322I", "W326F", "F329L"], "nef": ["I10L", "V16I", "I20M", "E28D", "D38A", "-50S", "V56A", "R71K", "Y81F", "G88S", "K104Q", "Q107K", "H116N", "P129S"], "p1": ["S8P"], "p17": ["R30K", "M31I", "G49S", "A54T", "E55K", "T67I", "L75I", "Y79F", "K114Q", "G121D", "S124N", "S126G", "V128I", "Q130H"], "p2": ["Q8H", "H9Q"], "p24": ["M54C", "M83I", "N183H"], "p6": ["S3N", "P5L", "S14N", "M17R", "I21M", "V39I"], "p7": ["D48E", "T50P"], "pro": ["L63T"], "rev": ["T8A", "V16I", "R17K", "C89S", "D108S", "A112T"], "tat": ["E9D", "T19K", "C31S", "H54R", "S62N", "N67D", "L74I", "P75S"], "vif": ["M29I", "H83Q", "K92R", "S95N", "Q97*", "Y110H", "P131T", "S132R", "K158R", "I159T", "N190S"], "vpr": ["P37T", "G86E"], "vpu": ["T2S", "A27F", "K35R", "D62N", "N73D"]}, "labels": {"aa": "INT: M22I, V32I, I101L; RT-p51: T11K, G123D, E177D, A200T, D248N, S251N, A272P, K277R, V292I, V293I, D335E, K357Q, R358G, E370A, T377R, S379C, R390K; RT-p66: T11K, G123D, E177D, A200T, D248N, S251N, A272P, K277R, V292I, V293I, D335E, K357Q, R358G, E370A, T377R, S379C, R390K, V466I, E529D; gp120: N57D, I80V, -105R, -107N, -108N, -109A, -111G, -112N, -113N, -114T, -115S, -116E, -121M, -122E, -123K, -124V, -126R, M133I, K141T, K150M, D157R, N158E, N159D, K204Q, K212E, I256L, V261A, K262E, I269L, R280H, G293D, D294R, E304N, N306S, Q316K, R322G, E323R, H324Y, -327N, S360A, G361S, N369-, T374-, -377S, G382D, -383S, -384D, R416K, Y456F; gp41: D109T, D113E, D129E, Y132F, E137A, S156A, I191L, S192A, L209H, T210I, R231K, S239N, L277S, T302S, L304F, D305N, A306T, V318A, A322I, W326F, F329L; nef: I10L, V16I, I20M, E28D, D38A, -50S, V56A, R71K, Y81F, G88S, K104Q, Q107K, H116N, P129S; p1: S8P; p17: R30K, M31I, G49S, A54T, E55K, T67I, L75I, Y79F, K114Q, G121D, S124N, S126G, V128I, Q130H; p2: Q8H, H9Q; p24: M54C, M83I, N183H; p6: S3N, P5L, S14N, M17R, I21M, V39I; p7: D48E, T50P; pro: L63T; rev: T8A, V16I, R17K, C89S, D108S, A112T; tat: E9D, T19K, C31S, H54R, S62N, N67D, L74I, P75S; vif: M29I, H83Q, K92R, S95N, Q97*, Y110H, P131T, S132R, K158R, I159T, N190S; vpr: P37T, G86E; vpu: T2S, A27F, K35R, D62N, N73D"}}}, {"name": "CRF22_01A1_NODE_0000009", "node_attrs": {"div": 0.13509000000000002, "clade_membership": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["C535A", "C688A", "G774T", "A866G", "A1101G", "G1271T", "G1328A", "A1364G", "T1403G", "G1835A", "A1901G", "G2156A", "A2182G", "A2194T", "A2254G", "G2273A", "C2356T", "A2419G", "C2885T", "A3280G", "G3643A", "G3766A", "G3770A", "T4177A", "A4255G", "A4273G", "C4288T", "A4677G", "G4697T", "A5038G", "A5164G", "A5396G", "T5695-", "A5696-", "C5707A", "C5789-", "A5790-", "A5792C", "T5793A", "A5796T", "T5797G", "T5798A", "G5799C", "G5800T", "C5801T", "C5802G", "A5803G", "A5804C", "C5806A", "T5807A", "T5808A", "-5809C", "-5810T", "-5811T", "G5845A", "-5865A", "A5957C", "C6067A", "C6166A", "-6167G", "-6168A", "-6170G", "-6172T", "A6176T", "-6177T", "-6208A", "-6210T", "C6213A", "T6216A", "-6229A", "G6274A", "A6330G", "T6610C", "C6636T", "C6654A", "A6669G", "A6730G", "C6752A", "C6758T", "C6800G", "-6824C", "-6956C", "-6957A", "-6958T", "-6961C", "-6962A", "-6977A", "-6978C", "A6995-", "A6996-", "T6997-", "G6998-", "T7095C", "C7264A", "A7269G", "G7470A", "C7547T", "A7590C", "C7678T", "T7948A", "C7998A", "A8032G", "G8152A", "C8155T", "G8171A", "G8231A", "C8311T", "A8417G", "A8496C", "C8675T"], "INT": ["D134E"], "RT-p51": ["V21I", "V60I"], "RT-p66": ["V21I", "V60I", "V559I"], "gp120": ["T35P", "N71K", "-107K", "T267N", "I269T", "Q300K", "H302Y", "Q319K", "-368H", "I414T", "R416N", "K472R"], "gp41": ["R56K", "N96T", "T232N", "A310T"], "nef": ["-50H"], "p17": ["T67S"], "p24": ["V15L", "I124V", "E180D"], "pro": ["V13I", "N35D"], "rev": ["S34T", "N50K", "T62A", "V102I"], "tat": ["N7S", "V80D"], "vif": ["I31V", "K151R", "*193W"]}, "labels": {"aa": "INT: D134E; RT-p51: V21I, V60I; RT-p66: V21I, V60I, V559I; gp120: T35P, N71K, -107K, T267N, I269T, Q300K, H302Y, Q319K, -368H, I414T, R416N, K472R; gp41: R56K, N96T, T232N, A310T; nef: -50H; p17: T67S; p24: V15L, I124V, E180D; pro: V13I, N35D; rev: S34T, N50K, T62A, V102I; tat: N7S, V80D; vif: I31V, K151R, *193W"}}, "children": [{"name": "AY371159", "node_attrs": {"div": 0.16089, "accession": "AY371159", "clade_membership": {"value": "CRF22_01A1"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_0001BBY"}, "LANL_subtype": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["A360C", "G401A", "A417C", "C456T", "A461C", "A474G", "A535G", "C558A", "G579A", "A688G", "-714A", "A716C", "A758G", "G762A", "A818G", "T824A", "G870A", "T872C", "C879A", "A880C", "G906A", "G908A", "A926G", "T944C", "T992G", "A1002T", "T1229C", "A1259G", "A1274G", "C1280T", "A1339G", "A1349G", "G1539A", "T1574C", "T1676C", "A1686G", "A1694C", "T1722G", "T1724G", "C1752-", "C1753-", "-1755C", "-1756A", "C1775G", "G1777A", "A2023G", "C2044T", "T2086C", "A2126G", "A2242G", "T2392A", "G2509A", "T2542G", "T2579A", "A2592G", "C2694T", "G2704C", "T2791C", "G2821A", "G2837A", "A2925G", "C2944T", "T2968A", "G2986A", "A3027G", "C3031G", "A3043G", "C3140T", "T3178C", "T3181G", "A3367G", "T3418C", "A3435G", "A3454G", "A3484G", "T3496C", "G3508A", "C3513T", "G3715A", "A3815C", "A3835G", "A4093G", "T4153G", "G4268A", "A4429G", "G4573A", "T4585G", "G4737A", "T4799G", "C4820A", "A4976C", "C5006T", "T5072C", "A5142T", "T5168G", "A5210G", "C5234G", "G5257A", "C5303T", "T5339C", "G5375A", "T5436G", "C5445T", "A5461G", "A5462T", "G5493A", "C5612A", "T5616C", "G5628T", "G5629A", "A5631T", "G5643A", "G5673A", "T5687C", "-5695A", "-5696T", "G5699A", "A5704G", "T5708G", "A5711G", "G5717A", "A5718G", "C5727T", "A5745C", "A5817G", "T5861-", "C5862-", "A5863-", "-5864C", "-5866A", "C5869T", "T5878C", "T5896C", "T5911G", "T5917G", "A5926G", "T5929C", "A6009G", "A6023G", "T6025G", "T6030C", "T6160G", "A6164G", "C6165A", "-6169T", "-6171C", "-6174G", "-6175G", "T6178C", "A6185-", "C6186-", "T6187-", "-6191A", "-6192A", "-6193T", "-6195G", "-6197T", "-6198C", "-6199T", "A6200-", "-6201G", "C6202T", "-6203T", "-6204G", "-6205A", "-6207G", "-6211T", "-6217C", "G6224-", "A6232G", "G6234C", "A6253G", "A6276G", "A6281G", "C6287T", "T6295C", "A6303G", "A6318G", "G6323-", "A6324-", "A6329G", "T6331A", "A6342T", "T6460G", "A6464G", "A6490C", "T6545C", "C6548T", "A6553G", "G6572A", "A6583G", "C6586T", "A6599T", "C6618T", "A6648C", "T6660G", "A6668G", "A6685C", "C6717T", "A6788G", "T6799C", "A6801G", "C6807T", "A6812C", "A6814G", "A6959G", "-6963A", "-6964C", "T6967A", "C6984T", "A6986G", "-7005G", "T7009C", "C7018T", "A7101C", "A7138G", "C7153A", "G7256A", "G7307C", "T7309G", "A7402G", "T7462C", "G7477A", "T7588C", "G7640A", "C7773A", "G7818A", "A7874C", "T7912C", "C7941A", "A7977G", "G8001A", "A8011C", "T8156C", "C8196A", "C8206T", "T8209C", "G8212A", "G8242A", "G8267A", "T8281G", "C8293G", "C8296T", "G8304C", "T8323G", "T8366C", "T8531C", "G8532A", "G8534T", "G8537A", "G8604A", "C8688A", "T8690C", "T8701A"], "INT": ["V165I", "D270E"], "RT-p51": ["T11A", "C162S", "K166R", "A200I", "E203D", "D248N", "K277R", "D291E", "K311R", "D312E", "S379G"], "RT-p66": ["T11A", "C162S", "K166R", "A200I", "E203D", "D248N", "K277R", "D291E", "K311R", "D312E", "S379G", "N447S", "T473I"], "gp120": ["S3Q", "D19E", "N21E", "N52S", "N57E", "V59A", "N102K", "T104E", "-105D", "K107R", "-108F", "-109N", "T110I", "-112T", "-113N", "-114S", "-115S", "E125-", "K141R", "K143E", "H145Y", "K150R", "K155G", "D157-", "N159G", "Y163F", "D202E", "K204E", "K212N", "E240K", "I243M", "I249F", "T255I", "N265T", "T269S", "N272G", "K277N", "A288V", "K312E", "Q316G", "A318V", "K320Q", "E323K", "N369D", "-370N", "-372T", "T374-", "-377L", "N378D", "N416T", "N433K", "T436A", "V468I"], "gp41": ["V2L", "D109E", "D113N", "T157N", "R172K", "I191L", "P213Q", "E225G", "R233K", "V290I", "T298N", "A322T", "R334T", "F340L"], "nef": ["E64N", "G88S", "H116N", "F120Y"], "p17": ["S9R", "K28Q", "E42D", "N47D", "L75I", "V82I", "A118G", "K127N"], "p24": ["V11I", "A47T", "Q50T", "V59I", "H87Q", "N91Y", "K203R"], "p6": ["S3G", "F15V", "P25-", "-26Q", "D32E", "R33K"], "p7": ["A25T"], "rev": ["I55L", "L103S", "N116K"], "tat": ["K29V", "Q78K"], "vif": ["V51I", "D78E", "R130S", "N186Y"], "vpr": ["E13V", "L22V", "R36G", "Q44E"], "vpu": ["T2Q", "W7C", "A8T", "Y30I", "R31K", "I33V", "L34R", "K35R", "R37K", "E63D", "D80N"]}, "labels": {"aa": "INT: V165I, D270E; RT-p51: T11A, C162S, K166R, A200I, E203D, D248N, K277R, D291E, K311R, D312E, S379G; RT-p66: T11A, C162S, K166R, A200I, E203D, D248N, K277R, D291E, K311R, D312E, S379G, N447S, T473I; gp120: S3Q, D19E, N21E, N52S, N57E, V59A, N102K, T104E, -105D, K107R, -108F, -109N, T110I, -112T, -113N, -114S, -115S, E125-, K141R, K143E, H145Y, K150R, K155G, D157-, N159G, Y163F, D202E, K204E, K212N, E240K, I243M, I249F, T255I, N265T, T269S, N272G, K277N, A288V, K312E, Q316G, A318V, K320Q, E323K, N369D, -370N, -372T, T374-, -377L, N378D, N416T, N433K, T436A, V468I; gp41: V2L, D109E, D113N, T157N, R172K, I191L, P213Q, E225G, R233K, V290I, T298N, A322T, R334T, F340L; nef: E64N, G88S, H116N, F120Y; p17: S9R, K28Q, E42D, N47D, L75I, V82I, A118G, K127N; p24: V11I, A47T, Q50T, V59I, H87Q, N91Y, K203R; p6: S3G, F15V, P25-, -26Q, D32E, R33K; p7: A25T; rev: I55L, L103S, N116K; tat: K29V, Q78K; vif: V51I, D78E, R130S, N186Y; vpr: E13V, L22V, R36G, Q44E; vpu: T2Q, W7C, A8T, Y30I, R31K, I33V, L34R, K35R, R37K, E63D, D80N"}}}, {"name": "MN153487", "node_attrs": {"div": 0.17154000000000003, "accession": "MN153487", "clade_membership": {"value": "CRF22_01A1"}, "country": {"value": "CM"}, "date": {"value": 2008.0}, "Strain_name": {"value": "08CMBDSH138"}, "LANL_subtype": {"value": "CRF22_01A1"}}, "branch_attrs": {"mutations": {"nuc": ["C193T", "A374G", "G386A", "G407A", "C496G", "C531G", "C532T", "A541G", "A585G", "C586T", "A654C", "G671A", "A678C", "C679A", "G697A", "A699G", "-714C", "G738A", "T824C", "A989C", "G1016A", "C1061T", "A1089G", "G1109A", "A1157G", "G1199A", "T1223C", "G1298A", "G1313A", "C1322T", "C1331T", "C1385T", "G1388A", "G1403A", "G1430A", "A1452C", "G1455A", "G1472A", "A1565G", "G1619A", "A1703T", "C1706T", "G1771A", "A1772G", "A1819G", "C1868T", "A1927G", "G1963A", "A1982G", "T1986C", "A2190T", "C2296T", "A2297G", "C2299T", "C2353A", "A2508C", "G2539A", "A2626C", "A2693G", "A2808C", "T2873C", "G2914A", "G2929A", "G2951A", "C2960T", "T2978C", "C3023T", "A3145G", "G3162A", "A3165G", "T3175C", "A3192G", "A3199G", "A3200G", "C3201T", "G3203A", "A3205T", "G3208A", "G3230A", "C3252T", "C3266T", "A3400G", "G3409A", "T3433C", "C3469A", "T3602C", "G3631A", "T3644A", "A3682C", "A3709G", "A3768G", "G3769A", "A3836G", "T3843C", "T3865A", "A3896G", "A3907G", "A3973C", "G3991A", "C4021T", "A4048G", "A4071T", "A4130C", "G4131C", "C4140T", "C4144T", "G4243A", "A4270T", "A4407G", "T4537C", "A4625G", "A4721C", "C4761T", "G4774A", "T4793C", "C4800T", "G4802A", "A4811G", "A4815C", "C4826A", "G4864A", "A4865G", "G4870A", "T4883C", "C4899A", "A4968G", "G5049A", "C5050A", "T5084C", "T5102C", "C5125T", "G5128A", "T5147C", "C5149T", "A5159G", "A5161C", "G5226A", "T5228C", "A5230G", "A5246G", "A5277T", "C5280T", "G5359C", "G5403T", "A5426G", "G5482A", "T5490C", "A5548C", "G5556A", "G5566A", "G5599C", "T5600C", "A5601G", "T5602C", "C5611A", "C5614T", "G5619T", "G5620A", "G5628A", "G5683A", "G5686C", "A5689-", "T5690-", "A5691-", "G5692-", "A5693-", "A5694-", "T5697-", "A5698-", "G5699-", "G5700-", "G5712A", "C5713G", "A5719-", "A5720-", "A5721-", "A5722-", "T5723-", "A5724-", "G5725-", "A5726-", "C5727-", "A5728-", "G5729-", "G5730-", "T5731-", "T5732-", "A5733-", "C5734-", "T5735-", "T5736-", "G5737-", "A5738-", "A5739-", "A5740-", "G5741-", "A5742-", "A5743-", "T5744-", "A5745-", "A5746-", "G5747-", "A5748-", "G5749-", "A5750-", "A5751-", "A5752-", "G5753-", "A5754-", "G5755-", "C5756-", "A5757-", "G5758-", "A5759-", "G5767A", "G5768A", "G5775A", "G5779A", "G5812T", "A5818G", "C5826T", "C5833T", "A5849T", "T5857G", "-5864A", "-5866C", "G5909A", "G5915A", "C5922T", "C5944T", "A5983T", "A6008G", "A6037G", "T6046G", "C6052T", "C6165T", "-6169G", "-6171T", "-6174A", "-6175A", "A6182T", "T6187C", "A6188C", "C6189G", "C6190A", "-6191G", "-6192G", "-6193A", "-6195A", "-6197G", "-6198A", "-6199C", "-6201C", "C6202A", "-6203G", "-6204C", "-6205G", "A6206G", "-6207A", "-6211G", "-6217T", "-6219A", "-6220C", "-6221A", "-6222C", "-6223A", "-6225C", "-6226G", "G6230A", "G6234A", "T6241C", "T6242A", "C6263A", "A6273G", "A6282G", "T6298C", "G6317A", "A6320T", "-6322G", "A6327G", "T6340C", "G6345T", "A6346G", "C6347T", "A6350G", "T6418C", "C6446T", "T6460C", "C6483T", "C6511T", "G6547A", "G6593A", "A6605G", "T6649A", "T6660C", "A6683G", "T6787C", "G6802T", "A6808C", "A6821G", "A6823T", "A6840C", "A6848G", "T6860C", "C6861A", "T6875A", "A6881G", "A6926G", "G6935A", "C6937A", "-6963T", "-6964G", "-6968T", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6974A", "-6975C", "-6976G", "G7004A", "-7005A", "T7014G", "T7015A", "G7072A", "G7102T", "C7124T", "C7127T", "A7135G", "T7150C", "A7155G", "T7159C", "G7160A", "C7161G", "A7162T", "C7201T", "T7222C", "C7250T", "G7276A", "A7348T", "A7396G", "T7591C", "T7606A", "T7622A", "C7625T", "G7627T", "A7630T", "A7641G", "T7642C", "G7677A", "C7690A", "G7701A", "C7782A", "G7790A", "G7862A", "G7873A", "T7921C", "G7980A", "G7995A", "A8069C", "G8070T", "C8080A", "T8094G", "C8106T", "A8119G", "T8138A", "G8145C", "C8149T", "T8172A", "C8213T", "G8216A", "C8293T", "C8369T", "A8400C", "C8416T", "A8420G", "G8439A", "T8456C", "T8505C", "G8506T", "G8535-", "A8536-", "G8537-", "G8558A", "A8584T", "G8590C", "A8663G", "G8666T", "T8672G", "G8682A", "G8738A", "G8804A", "A8808G", "A8812C", "T8813C", "A8827C", "T8829A", "A8859G", "T8860C", "T8887G", "G8888A", "A8893C", "C8934A", "C9068T", "C9075T", "T9084A"], "INT": ["T21A", "V23A", "N41D", "Y99F", "S119P", "T122I", "K211R", "R284G"], "RT-p51": ["K32I", "S68G", "D86E", "E138A", "E177D", "K238T", "A286T", "R356K", "K357R", "K366R", "T369V", "E370N", "T386I", "I435M"], "RT-p66": ["K32I", "S68G", "D86E", "E138A", "E177D", "K238T", "A286T", "R356K", "K357R", "K366R", "T369V", "E370N", "T386I", "I435M", "L517I", "E529D", "K558R"], "gp120": ["S1R", "-5N", "D19N", "T23I", "N52D", "N64K", "T104I", "-105E", "A106V", "-108N", "-109D", "-111A", "-112E", "-113M", "-123K", "-124K", "-126V", "-127K", "S130T", "M133I", "L137I", "K140R", "K143R", "I156L", "N158S", "N159S", "I166V", "P210L", "E247K", "N251D", "N265K", "N272S", "K277E", "D294E", "Q316D", "E323D", "K329T", "I332V", "S336H", "L341I", "I343V", "N358D", "G361R", "-370M", "-372W", "-373S", "-375T", "-377S", "G382N", "I387R", "M406I", "N434S", "T436S"], "gp41": ["S107T", "Q108Y", "D113G", "S125N", "D129E", "S133N", "T160N", "D163N", "V187I", "G226D", "R231K", "S256L", "I264S", "A268V", "W279R", "G281A", "V290K", "L304F", "D305N", "W326C"], "nef": ["I20L", "A25V", "V33I", "C55L", "E65-", "Y81F", "G83A", "E108D", "V114I", "N156D", "N157T", "N162T", "C163S", "M173A", "M182R", "K184T"], "p17": ["A54G", "P66V", "S67N", "K69R", "T84V", "I107L", "T115Q", "A118E", "G121D", "T122A", "K127Q"], "p2": ["T10P", "G11S"], "p24": ["V3M", "S120G"], "p6": ["R31K", "N47S"], "pro": ["I62V", "L63P"], "rev": ["E11D", "R14K", "Q74P", "L78I", "H82Q", "T91A", "V97E", "R99S", "Q101*", "L103F", "D108E"], "tat": ["E9D", "Q17R", "V36I", "T58P", "D64N"], "vif": ["E45D", "R63K", "K77Q", "H80Q", "R93K", "S95N", "Q105K", "I128V", "A155K", "T180I", "R181K", "T188I", "H192P"], "vpr": ["Y15H", "T19A", "G41D", "N48D", "E58V", "A59V", "R85P"], "vpu": ["P3S", "L4F", "E5D", "W7*", "V26-", "A27-", "I28-", "E29-", "Y30-", "R31-", "K32-", "Q36I", "R37I", "K38-", "I39-", "D40-", "R41-", "L42-", "L43-", "E44-", "R45-", "I46-", "R47-", "E48-", "R49-", "A50-", "E51-"]}, "labels": {"aa": "INT: T21A, V23A, N41D, Y99F, S119P, T122I, K211R, R284G; RT-p51: K32I, S68G, D86E, E138A, E177D, K238T, A286T, R356K, K357R, K366R, T369V, E370N, T386I, I435M; RT-p66: K32I, S68G, D86E, E138A, E177D, K238T, A286T, R356K, K357R, K366R, T369V, E370N, T386I, I435M, L517I, E529D, K558R; gp120: S1R, -5N, D19N, T23I, N52D, N64K, T104I, -105E, A106V, -108N, -109D, -111A, -112E, -113M, -123K, -124K, -126V, -127K, S130T, M133I, L137I, K140R, K143R, I156L, N158S, N159S, I166V, P210L, E247K, N251D, N265K, N272S, K277E, D294E, Q316D, E323D, K329T, I332V, S336H, L341I, I343V, N358D, G361R, -370M, -372W, -373S, -375T, -377S, G382N, I387R, M406I, N434S, T436S; gp41: S107T, Q108Y, D113G, S125N, D129E, S133N, T160N, D163N, V187I, G226D, R231K, S256L, I264S, A268V, W279R, G281A, V290K, L304F, D305N, W326C; nef: I20L, A25V, V33I, C55L, E65-, Y81F, G83A, E108D, V114I, N156D, N157T, N162T, C163S, M173A, M182R, K184T; p17: A54G, P66V, S67N, K69R, T84V, I107L, T115Q, A118E, G121D, T122A, K127Q; p2: T10P, G11S; p24: V3M, S120G; p6: R31K, N47S; pro: I62V, L63P; rev: E11D, R14K, Q74P, L78I, H82Q, T91A, V97E, R99S, Q101*, L103F, D108E; tat: E9D, Q17R, V36I, T58P, D64N; vif: E45D, R63K, K77Q, H80Q, R93K, S95N, Q105K, I128V, A155K, T180I, R181K, T188I, H192P; vpr: Y15H, T19A, G41D, N48D, E58V, A59V, R85P; vpu: P3S, L4F, E5D, W7*, V26-, A27-, I28-, E29-, Y30-, R31-, K32-, Q36I, R37I, K38-, I39-, D40-, R41-, L42-, L43-, E44-, R45-, I46-, R47-, E48-, R49-, A50-, E51-"}}}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000821", "node_attrs": {"div": 0.07611, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "T213C", "T214G", "-215A", "-216A", "-217A", "A303T", "G428A", "A513C", "A518G", "G579A", "C590T", "A592G", "T593G", "G615A", "T635C", "A697C", "G712-", "A715-", "T718-", "C719-", "A776G", "A806G", "T926A", "A932G", "G978A", "A1022G", "C1094T", "A1134G", "C1214T", "C1220T", "C1245T", "C1247G", "G1256A", "A1265G", "T1451G", "A1454C", "-1459A", "A1486G", "G1498C", "T1502A", "G1673A", "G1697A", "A1768C", "A1780G", "G1784A", "C1826T", "T1828A", "A1839G", "G1912A", "T2011C", "C2296T", "A2341G", "T2452C", "C2488T", "C2575T", "C2615A", "C2975A", "A3071G", "C3207T", "C3756G", "G3787C", "G3796A", "T3799C", "C3970T", "C3977T", "G3989A", "C4258T", "A4474C", "C4724T", "G4861A", "T4910C", "A5146G", "A5148T", "T5162C", "G5185A", "C5227A", "C5251A", "A5272G", "C5333T", "A5444G", "C5448T", "T5466C", "G5482T", "T5484G", "A5537G", "A5594G", "T5602A", "C5614T", "T5708G", "A5715G", "G5717A", "A5718G", "C5763T", "A5788T", "C5789T", "G5800A", "-5809G", "-5810G", "C5826T", "G5837T", "G5842A", "G5843A", "-5866A", "T5887C", "G5965A", "C6007T", "A6023C", "C6097T", "C6148T", "-6196T", "C6263T", "A6286G", "A6329G", "C6347T", "G6442A", "A6810C", "A6820G", "C6937A", "-6962A", "-6966C", "T7144A", "A7255T", "G7276A", "C7411T", "G7807A", "G7883A", "A7918G", "C8080A", "C8092T", "A8093G", "G8143A", "G8145C", "G8170A", "T8172C", "T8176C", "C8221A", "C8223T", "G8240A", "G8242C", "T8268G", "T8279G", "A8425C", "-8487G", "-8490G", "A8570G", "T8597C", "T8636A", "C8666G", "C8699A", "T8708A", "T8740C", "C8741T", "A8762G", "G8774A", "G8784A", "T8786G", "A8794C", "A8798G", "G8807A", "C8831T", "C8832T", "G8834A", "G8846C", "G8873C", "A8886G", "G8888C", "A8893G", "G8894A", "A8909G", "C8913T", "G8915T", "C8927T", "G8991A", "A9005G", "C9023A", "T9073C"], "INT": ["V72I"], "RT-p51": ["P294T", "I326V", "A371V"], "RT-p66": ["P294T", "I326V", "A371V"], "gp120": ["S1N", "S3-", "D4E", "R18K", "N57H", "I153V", "K201N", "K319T", "K329T"], "gp41": ["D109N", "V194I", "I264V", "G281A", "V290A", "T307I", "E313N", "C326G"], "nef": ["E28T", "D98E", "Q104K", "V148M", "C163S", "E177D", "M182V", "K184R", "L191F"], "p17": ["I60L", "I61M", "V82I", "Y86W", "V94I", "D121A", "S126-", "V128-"], "p2": ["N9Q", "-10S"], "p24": ["A14S", "I15M", "I135V"], "p6": ["Q30P", "E34G"], "p7": ["R11T"], "pro": ["K14R", "K20I"], "rev": ["S8A", "L78I", "H82C", "G99S", "V108I"], "tat": ["N23S", "V36L", "Q54R"], "vif": ["H187R", "T188S"], "vpr": ["Y15F"], "vpu": ["P3S", "L67M", "W77-", "-79N"]}, "labels": {"aa": "INT: V72I; RT-p51: P294T, I326V, A371V; RT-p66: P294T, I326V, A371V; gp120: S1N, S3-, D4E, R18K, N57H, I153V, K201N, K319T, K329T; gp41: D109N, V194I, I264V, G281A, V290A, T307I, E313N, C326G; nef: E28T, D98E, Q104K, V148M, C163S, E177D, M182V, K184R, L191F; p17: I60L, I61M, V82I, Y86W, V94I, D121A, S126-, V128-; p2: N9Q, -10S; p24: A14S, I15M, I135V; p6: Q30P, E34G; p7: R11T; pro: K14R, K20I; rev: S8A, L78I, H82C, G99S, V108I; tat: N23S, V36L, Q54R; vif: H187R, T188S; vpr: Y15F; vpu: P3S, L67M, W77-, -79N"}}, "children": [{"name": "results/subtype_trees/CRF63_02A6.nwk", "node_attrs": {"div": 0.10936, "clade_membership": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["-49T", "C96T", "A159G", "-161A", "T201G", "A205G", "G206T", "A425G", "T486C", "T506C", "A557G", "T596C", "A632G", "A654G", "A656G", "A678G", "G740A", "T767C", "G771T", "C827T", "T852A", "A878G", "T962G", "T979C", "T1003A", "T1055C", "G1090A", "A1115G", "C1136T", "T1421G", "-1452T", "G1508A", "A1532G", "G1586A", "A1595C", "C1598T", "A1642G", "A1644C", "G1661A", "T1722G", "T1724G", "A1758C", "A1781G", "G1845A", "A1907G", "T1954C", "A1990G", "T1996C", "A2056G", "T2101A", "G2215A", "G2248A", "G2273A", "A2350G", "C2386A", "G2428A", "G2431A", "T2449A", "G2456T", "T2521C", "G2539A", "A2612T", "C2638T", "T2653C", "A2665C", "C2671T", "G2686A", "A2715C", "A2716T", "A2728T", "C2740T", "A2755G", "C2930T", "A2962G", "A2974G", "G3016A", "C3067T", "A3124G", "A3167G", "A3204C", "A3208G", "G3250A", "G3340A", "T3358C", "T3368C", "A3382G", "A3385G", "C3391A", "A3409G", "T3436C", "G3442A", "C3449A", "A3529G", "T3613C", "T3644A", "C3653A", "G3667A", "G3679A", "G3846A", "G3916A", "C3922T", "G3997A", "C4021A", "A4076C", "C4123T", "A4130C", "G4131C", "G4145A", "C4146G", "A4159T", "A4231G", "T4391A", "C4412T", "G4459A", "C4471T", "A4522G", "G4539A", "T4540C", "G4549A", "G4622A", "A4693G", "T4697G", "T4706C", "T4730C", "T4799G", "T4805A", "A4817G", "A4865G", "C4914T", "C4965G", "G4968A", "A4976C", "G4986A", "A4988C", "T5006C", "T5027C", "A5061G", "A5065G", "G5086A", "T5091C", "G5128A", "T5203C", "C5221A", "G5276A", "A5277T", "A5336G", "T5339C", "G5382T", "G5385A", "C5412T", 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"A7796T", "C7805T", "T7852G", "C7898A", "T7912C", "G7918T", "A7962G", "A7964G", "T8092A", "T8171G", "A8173C", "C8213T", "C8242T", "A8264G", "C8293T", "G8354A", "C8369T", "A8409G", "C8412G", "G8436C", "A8459G", "A8469G", "T8483C", "T8492C", "T8507C", "G8558A", "A8576G", "T8582A", "T8595C", "T8640C", "A8746T", "G8804A", "A8829G", "G8830C", "A8859C", "G8905A", "C8906A", "A8916C", "A8918T", "C8921T", "A8922G", "C8948T", "G8977A", "C8979A", "A9134T", "C9181T"], "INT": ["E11D", "S24N", "I101L", "S119P", "A124S", "S206T", "S255N", "G283S"], "RT-p51": ["V60I", "D121Y", "T173L", "E207A", "K211N", "A272P", "K357R", "R358G", "E370A", "D432E"], "RT-p66": ["V60I", "D121Y", "T173S", "E207A", "K211N", "A272P", "K357R", "R358G", "E370A", "D432E", "L452I", "L517I", "Q520K"], "gp120": ["N1K", "-3A", "V40I", "I56T", "I126M", "K140R", "N159-", "N160-", "K224R", "E240G", "I249L", "T255V", "P263S", "K265A", "S278G", "T308A", "T313A", "A318V", "R322Q", "T329-", "T334K", "S347T", "T366S", "-370S", "-372N", "-373S", "Q412P", "E418N", "L424I", "N433-", "K472G"], "gp41": ["S23A", "I24V", "S42N", "D110E", "I135L", "D148E", "A156T", "S157N", "T165S", "Q199K", "E220G", "F263L", "L304F", "I321V"], "nef": ["T23A", "A32P", "I43V", "F85L", "I133T", "Y135F", "M173L", "R188K", "K192H", "I194V"], "p1": ["K4R", "I5L", "S9N"], "p17": ["I107V", "T115A"], "p24": ["S41T", "V83T", "I91N", "S120N"], "p6": ["F15V", "-26Q", "K27-"], "pro": ["G16E", "N37D", "I64M"], "rev": ["K39R", "C82S", "I108S", "I109L"], "tat": ["E2D", "T19K", "R53G", "P59S", "K85E"], "vif": ["K36R", "H73Q", "H110Y", "Q127E", "V128I", "R130S", "E134N", "T159E", "K160R", "R167K", "R181K"], "vpr": ["E58I", "A93S", "G94S"], "vpu": ["S3T", "F27Y", "R41K", "M67V", "-69N", "D80N", "L82V"]}, "labels": {"aa": "INT: E11D, S24N, I101L, S119P, A124S, S206T, S255N, G283S; RT-p51: V60I, D121Y, T173L, E207A, K211N, A272P, K357R, R358G, E370A, D432E; RT-p66: V60I, D121Y, T173S, E207A, K211N, A272P, K357R, R358G, E370A, D432E, L452I, L517I, Q520K; gp120: N1K, -3A, V40I, I56T, I126M, K140R, N159-, N160-, K224R, E240G, I249L, T255V, P263S, K265A, S278G, T308A, T313A, A318V, R322Q, T329-, T334K, S347T, T366S, -370S, -372N, -373S, Q412P, E418N, L424I, N433-, K472G; gp41: S23A, I24V, S42N, D110E, I135L, D148E, A156T, S157N, T165S, Q199K, E220G, F263L, L304F, I321V; nef: T23A, A32P, I43V, F85L, I133T, Y135F, M173L, R188K, K192H, I194V; p1: K4R, I5L, S9N; p17: I107V, T115A; p24: S41T, V83T, I91N, S120N; p6: F15V, -26Q, K27-; pro: G16E, N37D, I64M; rev: K39R, C82S, I108S, I109L; tat: E2D, T19K, R53G, P59S, K85E; vif: K36R, H73Q, H110Y, Q127E, V128I, R130S, E134N, T159E, K160R, R167K, R181K; vpr: E58I, A93S, G94S; vpu: S3T, F27Y, R41K, M67V, -69N, D80N, L82V", "clade": "CRF63_02A6"}}, "children": [{"name": "CRF63_02A6_NODE_0000001", "node_attrs": {"div": 0.11151, "clade_membership": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["T614G", "G671A", "G791A", "G1493A", "G2389A", "T2499C", "C2613T", "A3091G", "A3136G", "A3280G", "T3310C", "C3469T", "T3541C", "C3542T", "G3595A", "C3610T", "G3816A", "C4501G", "A4696G", "A4937C", "T5197C", "-6170C", "-6171C", "C6183G", "A6232G", "T6263G", "G6274A", "A6277G", "C6278A", "G6280A", "A6283T", "G6303A", "A6330T", "G6368A", "A6462C", "T6856G", "T7153C", "C7762T", "A7947G", "G7977A", "C7984A", "A7992G", "C8005G", "G8006A", "G8388A"], "INT": ["R14K"], "RT-p51": ["I135T"], "RT-p66": ["I135T", "S173L", "H483Y"], "gp120": ["-106P", "-114S", "-115S", "L137V", "Q142K", "K203T"], "gp41": ["Y108Q", "E215G", "G225E", "D230G", "V235I"], "nef": ["V16I"], "rev": ["R53D"], "tat": ["N80D"], "vif": ["E117D"], "vpu": ["-72L", "-73L"]}, "labels": {"aa": "INT: R14K; RT-p51: I135T; RT-p66: I135T, S173L, H483Y; gp120: -106P, -114S, -115S, L137V, Q142K, K203T; gp41: Y108Q, E215G, G225E, D230G, V235I; nef: V16I; rev: R53D; tat: N80D; vif: E117D; vpu: -72L, -73L"}}, "children": [{"name": "MZ427729", "node_attrs": {"div": 0.16827999999999999, "accession": "MZ427729", "clade_membership": {"value": "CRF63_02A6"}, "country": {"value": "RU"}, "date": {"value": 2019.0}, "Strain_name": {"value": "RU_ERS_3658_2019"}, "LANL_subtype": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["G256A", "C379T", "A417C", "A530G", "A534G", "A562C", "A605G", "A606G", "G607A", "G612A", "A615G", "G629A", "A645G", "G654A", "G678A", "C697A", "A730T", "C731T", "A740G", "C767T", "A873G", "G956A", "G962A", "G977A", "G1173A", "T1174C", "G1192A", "C1280T", "T1329G", "A1442G", "A1461G", "G1487A", "A1497C", "G1532A", "C1535T", "A1544G", "G1589A", "A1592G", "C1595G", "T1598C", "C1613T", "G1642A", "C1644A", "A1657G", "A1712G", "-1746T", "-1747C", "-1748C", "T1752C", "T1754G", "C1756A", "C1758-", "A1759-", "G1760-", "C1782A", "T1791C", "G1839A", "A1879G", "A1993G", "A2007G", "A2210C", "C2211T", "A2272C", "A2297G", "A2320G", "T2488C", "T2542G", "G2548A", "A2566C", "G2567T", "G2693A", "A2699G", "G2710A", "A2727G", "T2728C", "C2828G", "A2829T", "G2830A", "C2839T", "G2878A", "A2887G", "T2899C", "G2921A", "A2938G", "A2956G", "G2980A", "G3019A", "G3094C", "C3100T", "A3115G", "G3124A", "A3196G", "A3239T", "A3277G", "G3398A", "G3409A", "C3436T", "A3442G", "G3477A", "G3490A", "C3499G", "C3500A", "G3523A", "T3526A", "G3529A", "C3545T", "A3654C", "A3724T", "A3814G", "T3850G", "T3922C", "A4003T", "C4006T", "A4057G", "C4076A", "C4079T", "A4105G", "T4123C", "C4130A", "C4131G", "C4144T", "G4146C", "T4153A", "T4159A", "C4162A", "A4178G", "C4181A", "A4182C", "G4186A", "G4231A", "A4459G", "T4471C", "G4522A", "A4539G", "C4540T", "A4564G", "G4573A", "G4581A", "G4597A", "A4622G", "A4625G", "G4637A", "G4677A", "A4682T", "A4694G", "G4697T", "G4727C", "G4774C", "G4855A", "A4878G", "C4890A", "T4891C", "C4898T", "T4938A", "T4989C", "C5006T", "T5018G", "C5027T", "C5034T", "A5037C", "C5041T", "A5048G", "A5049C", "C5056T", "G5061A", "A5062G", "A5063G", "A5069G", "A5128G", "A5134G", "G5143A", "G5146A", "T5147C", "T5148A", "C5160T", "A5161G", "C5162T", "G5179A", "A5185G", "C5203T", "T5209A", 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"V318S", "T319L", "Q322R", "H324Y", "N327-", "-328N", "-329K", "K334R", "I343V", "T344I", "T347S", "S366T", "N372R", "-374N", "-375E", "N378-", "P412R", "V414N", "R416S", "N418V", "I424L", "L425I", "T427I", "-433S", "T436E", "N437T", "E438-", "T439-", "G443I", "D446N", "R448K", "K462E", "L466I", "G472K"], "gp41": ["V2I", "V7A", "L9I", "A23S", "V24I", "N42S", "M54L", "L118M", "I124V", "S125I", "D129E", "I130T", "N133T", "L135I", "E137Q", "S138A", "E148D", "T156A", "N157S", "D163N", "V197A", "K199Q", "F206L", "H211P", "H212N", "Q213P", "R214E", "E223N", "D232S", "S239N", "H258R", "V264I", "L265S", "L277S", "L288I", "F304I", "I307L", "R324G", "F340L", "A343I"], "nef": ["E63D", "E108D", "M148V", "V153I", "E158A", "N161D", "L198Q"], "p1": ["R4K", "L5I", "N9S"], "p17": ["A15V", "K28Q", "T67A", "K76T", "R91E", "D93K", "I94V", "I104V", "V107M", "A115T", "A121D", "Y132F"], "p2": ["-12V", "I13-"], "p24": ["T48A", "V148T", "R154K", "S200A"], "p6": ["L35I"], "p7": ["T11P"], "pro": ["R14K", "K70R"], "rev": ["I18T", "P30K", "E32R", "R39K", "R41Q", "R50K", "E57Q", "T62A", "A68T", "S82N", "I102V", "S106Y", "S112T"], "tat": ["K29R", "C31S", "Q63P", "N67D", "T76Q", "R78Q", "G79R", "P81Q"], "vif": ["R4K", "V31I", "R47S", "R63T", "R90K", "I98V", "L102T", "S118T", "Y135H", "K151Q", "A152V", "T155P", "T157I", "E159R", "K181R", "H183R", "S186N", "R187H", "S188T", "H192C"], "vpr": ["F15H", "T19M", "E48S", "I58E", "I84T"], "vpu": ["K37R", "L43I", "D44E", "D58E", "-71V"]}, "labels": {"aa": "INT: D25E, L101I, P119S, S124T, I135V, Q136T, N255S, R269K, S283G, R284G, D288N; RT-p51: T39L, S68G, A158S, A200T, I202V, N211S, Q245V, V276I, R357K, I382L, V435I; RT-p66: T39L, S68G, A158S, A200T, I202V, N211S, Q245V, V276I, R357K, I382L, V435I, R461K, L469I; gp120: K18R, T35K, I40V, N52D, T56L, H57N, K93R, -105A, -107N, N108I, -109A, -110S, -111F, -112N, -123K, -124E, R140K, K143T, V153I, V154L, N157S, -160S, S162E, A172T, I173M, S181T, N201K, E204N, N206T, T208K, G240E, L249I, N251D, A253N, V255N, N261T, S263P, A265N, N267T, T269I, N272G, G278S, H280R, I298P, E309A, K312N, A313T, Q315L, V317I, V318S, T319L, Q322R, H324Y, N327-, -328N, -329K, K334R, I343V, T344I, T347S, S366T, N372R, -374N, -375E, N378-, P412R, V414N, R416S, N418V, I424L, L425I, T427I, -433S, T436E, N437T, E438-, T439-, G443I, D446N, R448K, K462E, L466I, G472K; gp41: V2I, V7A, L9I, A23S, V24I, N42S, M54L, L118M, I124V, S125I, D129E, I130T, N133T, L135I, E137Q, S138A, E148D, T156A, N157S, D163N, V197A, K199Q, F206L, H211P, H212N, Q213P, R214E, E223N, D232S, S239N, H258R, V264I, L265S, L277S, L288I, F304I, I307L, R324G, F340L, A343I; nef: E63D, E108D, M148V, V153I, E158A, N161D, L198Q; p1: R4K, L5I, N9S; p17: A15V, K28Q, T67A, K76T, R91E, D93K, I94V, I104V, V107M, A115T, A121D, Y132F; p2: -12V, I13-; p24: T48A, V148T, R154K, S200A; p6: L35I; p7: T11P; pro: R14K, K70R; rev: I18T, P30K, E32R, R39K, R41Q, R50K, E57Q, T62A, A68T, S82N, I102V, S106Y, S112T; tat: K29R, C31S, Q63P, N67D, T76Q, R78Q, G79R, P81Q; vif: R4K, V31I, R47S, R63T, R90K, I98V, L102T, S118T, Y135H, K151Q, A152V, T155P, T157I, E159R, K181R, H183R, S186N, R187H, S188T, H192C; vpr: F15H, T19M, E48S, I58E, I84T; vpu: K37R, L43I, D44E, D58E, -71V"}}}, {"name": "MZ427775", "node_attrs": {"div": 0.14907, "accession": "MZ427775", "clade_membership": {"value": "CRF63_02A6"}, "country": {"value": "RU"}, "date": {"value": 2019.0}, "Strain_name": {"value": "RU_ERS_3337_2019"}, "LANL_subtype": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["A263G", "A302T", "A368G", "G378A", "G394A", "C539T", "A585G", "C586T", "A618C", "A619G", "A666G", "C668T", "G677A", "A758T", "T763C", "T771C", "G878A", "A978G", "C979T", "A1017C", "C1055T", "C1118T", "G1134A", "C1350T", "T1452C", "G1495A", "C1595T", "T1646C", "C1721T", "G1771A", "G1794A", "C1853A", "G1998A", "C2047T", "G2068A", "T2071C", "T2093C", "T2116A", "A2248G", "C2281T", "A2293G", "T2299C", "C2326T", "A2329G", "A2332G", "G2341A", "C2353T", "C2356T", "G2362A", "C2365T", "T2380C", "A2392T", "A2428G", "A2431G", "A2449T", "C2452T", "T2453C", "T2456G", "G2462A", "A2463G", "T2467C", "T2479G", "T2494A", "T2575C", "A2629G", "A2692G", "T2779C", "A2794G", "A2925G", "A2929C", "C2960T", "A3165G", "C3252T", "A3340G", "C3358T", "C3376T", "T3497C", "C3499T", "G3556A", "G3643A", "A3655G", "A3685G", "A3709G", "A3715G", "G3756A", "A3768G", "A3769G", "A3772G", "T3784A", "C3787A", "A3796G", "C3808A", "G3834A", "A3846G", "A3866G", "A3916G", "A3934G", "T3970C", "T3977C", "A3989G", "T3991A", "C3995A", "A4021C", "A4051G", "G4109A", "A4112G", "A4175G", "A4176G", "C4180T", "A4243G", "T4258C", "C4270A", "G4273A", "T4276G", "A4420C", "T4441A", "G4531A", "G4550A", "A4694C", "T4701G", "C4706T", "G4723A", "T4724C", "A4725G", "C4730T", "C4754T", "A4775G", "T4776C", "G4786C", "A4805T", "A4806C", "G4816A", "G4817A", "C4820T", "A4825T", "A4847G", "G4855C", "G4856A", "C4857T", "A4858T", "G4859A", "A4861G", "G4865T", "T4868C", "G4870A", "C4871G", "T4883C", "A4888C", "A4892G", "G4904A", 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"C6317T", "A6327G", "G6329A", "A6332G", "G6339A", "C6340T", "T6355C", "C6369T", "T6409C", "T6438A", "A6484G", "C6545T", "C6559T", "G6571A", "T6582A", "G6583A", "C6692G", "A6695G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6752A", "A6773G", "C6777A", "G6819A", "A6844C", "C6850T", "C6855A", "C6859T", "T6860A", "C6861G", "G6935A", "A6965C", "-6972A", "-6973T", "-6974A", "-6975G", "-6976C", "-6977A", "-6978C", "-6979T", "-6980G", "-6981G", "-6982G", "-6983G", "-6984G", "-6985A", "G6990T", "-7005G", "G7102A", "C7156T", "A7158C", "T7159A", "A7237G", "A7268G", "G7369A", "C7463A", "T7630G", "T7642A", "T7702C", "G7868A", "G7965A", "A8029C", "C8051A", "C8077T", "T8094C", "C8103T", "A8104-", "G8105-", "C8106-", "G8107-", "A8108-", "G8109-", "G8110-", "A8111-", "C8112-", "T8113-", "G8114-", "T8115-", "G8116-", "G8117-", "A8118-", "A8119-", "C8120-", "T8121-", "T8122-", "C8123-", "T8124-", "G8134C", "A8143G", "C8145G", "G8255A", "A8258C", "G8264A", "G8276T", "C8277T", "G8279T", "T8287C", "C8291T", "T8292G", "C8294A", "A8305G", "C8320T", "T8321G", "T8322C", "G8329A", "T8337A", "T8348G", "T8369C", "T8390A", "A8402G", "C8406A", "G8407A", "C8425T", "C8460T", "C8477T", "C8492T", "A8519G", "A8558G", "A8564G", "G8570A", "G8576A", "A8660G", "C8684T", "T8685C", "A8699C", "A8701T", "A8708T", "C8720T", "A8726C", "G8732A", "A8744G", "T8746A", "G8753A", "C8756A", "C8794A", "C8830T", "T8831G", "G8868C", "A8869C", "C8873A", "G8875A", "T9012C", "G9016A", "C9078T"], "INT": ["D3E", "D11E", "R20K", "N24S", "I31V", "I72V", "L74I", "V112I", "I113V", "N134G", "D167E", "K215N", "N222K", "V259I"], "RT-p51": ["Y121D", "D123S", "I178M", "K277R", "Q278H", "T386I"], "RT-p66": ["Y121D", "D123S", "I178M", "K277R", "Q278H", "T386I", "S468P", "S554N", "K558R"], "gp120": ["A2T", "E21D", "H57R", "H77Q", "E78T", "K93Q", "-105E", "-109S", "-110T", "-111R", "-112S", "-116N", "-117G", "-118E", "M133V", "E136G", "K141R", "K143L", "V153L", "P155S", "N157D", "N158-", "N161-", "A172I", "F195Y", "M243K", "I279V", "Q300K", "K307G", "A308E", "-326N", "G361T", "N369S", "-374T", "-376G", "-379I", "-380T", "-381G"], "gp41": ["A189T", "R221E", "L242F", "V264A", "A267V", "A268G", "R269H", "T270S", "V271S", "E272L", "L273K", "L274G", "G275L", "A281G", "V318I", "I319L", "V321I", "A325F", "G326C", "L330C", "H331N", "F340A", "L345Q"], "nef": ["I20M", "R22K", "T28V", "H40Y", "Y115H", "Y120F", "F135Y", "A151E", "S163V", "E176P", "D177E", "R178K"], "p17": ["A15T", "R20Q", "T84V", "D93E", "K95R", "S111G"], "p24": ["Q9H", "V11A", "S14P", "T83V", "M96L", "V135I", "P207S"], "p6": ["R31K", "A39T"], "p7": ["R10K"], "pro": ["L19I", "C67Y", "F99L"], "rev": ["G6E", "E10A", "A15V", "V16I", "S61R", "A68E", "P77S", "S86-", "E87-", "D88-", "C89-", "S92Q", "G93Q", "T94P", "S99G"], "tat": ["E9K", "S23N", "C31V", "N40K", "G57R", "R62H", "K71E", "E86K"], "vif": ["R36S", "F39V", "S46N", "R47G", "R67T", "Q73H", "T74P", "R77K", "H80L", "I87M", "R90T", "Q91L", "K92R", "R93S", "S95K", "D101A", "V166I"], "vpr": ["T19A", "H45Y", "I63T"], "vpu": ["V14I", "K38N", "-70Y", "-71D", "N80D"]}, "labels": {"aa": "INT: D3E, D11E, R20K, N24S, I31V, I72V, L74I, V112I, I113V, N134G, D167E, K215N, N222K, V259I; RT-p51: Y121D, D123S, I178M, K277R, Q278H, T386I; RT-p66: Y121D, D123S, I178M, K277R, Q278H, T386I, S468P, S554N, K558R; gp120: A2T, E21D, H57R, H77Q, E78T, K93Q, -105E, -109S, -110T, -111R, -112S, -116N, -117G, -118E, M133V, E136G, K141R, K143L, V153L, P155S, N157D, N158-, N161-, A172I, F195Y, M243K, I279V, Q300K, K307G, A308E, -326N, G361T, N369S, -374T, -376G, -379I, -380T, -381G; gp41: A189T, R221E, L242F, V264A, A267V, A268G, R269H, T270S, V271S, E272L, L273K, L274G, G275L, A281G, V318I, I319L, V321I, A325F, G326C, L330C, H331N, F340A, L345Q; nef: I20M, R22K, T28V, H40Y, Y115H, Y120F, F135Y, A151E, S163V, E176P, D177E, R178K; p17: A15T, R20Q, T84V, D93E, K95R, S111G; p24: Q9H, V11A, S14P, T83V, M96L, V135I, P207S; p6: R31K, A39T; p7: R10K; pro: L19I, C67Y, F99L; rev: G6E, E10A, A15V, V16I, S61R, A68E, P77S, S86-, E87-, D88-, C89-, S92Q, G93Q, T94P, S99G; tat: E9K, S23N, C31V, N40K, G57R, R62H, K71E, E86K; vif: R36S, F39V, S46N, R47G, R67T, Q73H, T74P, R77K, H80L, I87M, R90T, Q91L, K92R, R93S, S95K, D101A, V166I; vpr: T19A, H45Y, I63T; vpu: V14I, K38N, -70Y, -71D, N80D"}}}]}, {"name": "CRF63_02A6_NODE_0000002", "node_attrs": {"div": 0.11666, "clade_membership": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["G762A", "A2560G", "G3094A", "A3514G", "T3530C", "G3563A", "G3766A", "G3925A", "G4060A", "A4078G", "C4474A", "A4561G", "T4742C", "C4807A", "A4993C", "T5003C", "A5831C", "A5842G", "G5915A", "A5950C", "T6046C", "C6103G", "C6175A", "-6177A", "C6184T", "A6229G", "A6230C", "A6233C", "A6234T", "C6241T", "A6261T", "G6284A", "A6288C", "T6290G", "A6319C", "T6331C", "T6334C", "T6337C", "A6346G", "A6364T", "T6582C", "-6833A", "-6834A", "-6835G", "A6840C", "A6854G", "T6860C", "C6861A", "-6972A", "-6973T", "-6974A", "-6975G", "-6976C", "-6978C", "-6979T", "-6980G", "-6981G", "-6982G", "A7459G", "A7668G", "T7702G", "T8008G", "A8032T", "C8037T", "A8119G", "A8288C", "T8302A", "A8453G", "G8666A", "T8935G"], "INT": ["M50I"], "RT-p51": ["L173R"], "RT-p66": ["G490R"], "gp120": ["E21K", "M126L", "K127L", "E136V", "V144M", "Y145S", "S146A", "K150R", "M243T", "K307R", "-326K", "-328T", "K334D", "S336H", "G361A", "T385-"], "gp41": ["K122R", "N133E", "R221G", "A245V", "I329L"], "nef": ["L198R"], "rev": ["S54A", "T62S", "T91A"], "vif": ["G37E", "T74K", "Q136S"], "vpu": ["-76L", "-77L", "N79D"]}, "labels": {"aa": "INT: M50I; RT-p51: L173R; RT-p66: G490R; gp120: E21K, M126L, K127L, E136V, V144M, Y145S, S146A, K150R, M243T, K307R, -326K, -328T, K334D, S336H, G361A, T385-; gp41: K122R, N133E, R221G, A245V, I329L; nef: L198R; rev: S54A, T62S, T91A; vif: G37E, T74K, Q136S; vpu: -76L, -77L, N79D"}}, "children": [{"name": "MZ427715", "node_attrs": {"div": 0.14584, "accession": "MZ427715", "clade_membership": {"value": "CRF63_02A6"}, "country": {"value": "RU"}, "date": {"value": 2019.0}, "Strain_name": {"value": "RU_ERS_3580_2019"}, "LANL_subtype": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["A356G", "G386A", "A399C", "C486T", "G495A", "A562G", "T602C", "A615G", "A658G", "T728C", "A968C", "T1004C", "A1090G", "T1100C", "G1109A", "C1137A", "T1172C", "C1235T", "G1313A", "A1343G", "G1380T", "A1448G", "A1661C", "C1758A", "G1769A", "A1849G", "C1954T", "G1990A", "C1996T", "C2011T", "A2020G", "G2027A", "A2032G", "A2038C", "G2056A", "C2057A", "A2210T", "C2211T", "A2242G", "C2263T", "A2289G", "G2294A", "G2350A", "C2353T", "A2396G", "G2426A", "T2467C", "T2494A", "T2542C", "G2567T", "T2575C", "G2602T", "C2605A", "A2637G", "A2645G", "G2663A", "G2710A", "A2727G", "T2728C", "T2740C", "A2750G", "C2828G", "A2829T", "G2833A", "C2839T", "G2914A", "G2932A", "G2951A", "G2980A", "G3071A", "A3097G", "A3099G", "C3140T", "A3164C", "A3250G", "G3307A", "G3448A", "C3485A", "G3494A", "G3647A", "G3886A", "T3924C", "A4107G", "T4110C", "A4195G", "T4198C", "G4294A", "A4397T", "C4501T", "A4558C", "A4650C", "G4673A", "T4674C", "T4702G", "G4774A", "A4819C", "A4860G", "T4883C", "A4892G", "G4904A", "C4910T", "T4959G", "A4964G", "G4965C", "C4976T", "C4992T", "T5188C", "G5199A", "T5281C", "T5293C", "G5359A", "C5372G", "G5375A", "A5385G", "T5424C", "G5444A", "C5445T", "T5448C", "C5466T", "T5482G", "G5484T", "G5493A", "C5496A", "G5533A", "G5537A", "C5539A", "A5544C", "T5551A", "A5555G", "G5556C", "A5557C", "G5558A", "C5560A", "T5562C", "C5563A", "G5566A", "G5594A", "A5614G", "T5669C", "C5679T", "A5685G", "A5716G", "G5725A", "-5812G", "-5813A", "-5814T", "A5824C", "T5827G", "A5828T", "G5830C", "T5836G", "A5866G", "T5870C", "A6016G", "A6022G", "A6065G", "G6167-", "A6168-", "C6172G", "T6178A", "G6179T", "-6180A", "A6186C", "T6187A", "-6195G", "-6198A", "-6200G", "-6201T", "-6202C", "-6203T", "-6204C", "-6205T", "-6207A", "-6208T", "-6209A", "-6210A", "-6211T", "-6212G", "-6213T", "-6214C", "-6215T", "-6216C", "-6217T", "-6218A", "-6219A", "-6220C", "-6221A", "-6222G", "-6223T", "-6225A", "-6226C", "G6260A", "C6278G", "A6326C", "T6328G", "G6329A", "T6382C", "G6425T", "G6466A", "A6580G", "T6634A", "G6647T", "-6686A", "-6687G", "-6688T", "-6689A", "-6690T", "-6691A", "G6693A", "C6758T", "G6771A", "G6776A", "C6818G", "T6849A", "-6977A", "-6995G", "-6996A", "-6997C", "-7001A", "-7002C", "-7003T", "-7005A", "G7072A", "A7155G", "A7158C", "T7159A", "C7201T", "G7307A", "C7313A", "G7322T", "T7408C", "G7438A", "A7525T", "G7614A", "C7625T", "G7627T", "A7691C", "A7701T", "G7790A", "A7855G", "T7920C", "C7926T", "C7939T", "G8001C", "A8023C", "T8167G", "T8213G", "T8223C", "G8255A", "A8323T", "T8333C", "G8375A", "C8425T", "A8446G", "T8480A", "C8483T", "C8492A", "T8498C", "A8519G", "A8531C", "G8576T", "A8584G", "T8585G", "A8647G", "C8648G", "A8652G", "C8676T", "T8779A", "G8829A", "T8832C", "A8844G", "C8859A", "A8863G", "A8869C", "C8900T", "T8918C", "G9030T", "T9084A", "T9095C", "T9109G"], "INT": ["I50T", "K111R", "V112A", "I208L"], "RT-p51": ["T39L", "K65R", "D67N", "K101E", "V111I", "A158S", "E169D", "R173S", "Y181C", "M184V", "G190S", "N211S", "K219E", "Q245V", "A286T", "V326I", "D335G", "R357Q"], "RT-p66": ["T39L", "K65R", "D67N", "K101E", "V111I", "A158S", "E169D", "Y181C", "M184V", "G190S", "N211S", "K219E", "Q245V", "A286T", "V326I", "D335G", "R357Q", "V467I", "V518I"], "gp120": ["T56M", "N71D", "-114S", "-116V", "-117S", "-119N", "-120V", "-121S", "-123S", "V136I", "Q142E", "N157E", "N158G", "-159Q", "N161S", "A191S", "A265S", "H302Y", "S306N", "A308T", "Q322G", "I332N", "D334A", "N369S", "T371G", "-375G", "-376N", "-377S", "-380T", "M406I", "N435S", "G472R"], "gp41": ["V2I", "L4M", "V7F", "M54L", "R74S", "S104N", "I130L", "D163N", "F206S", "T208I", "R233T", "F304V", "I307T", "V318I"], "nef": ["T28V", "Q35R", "S46R", "E63D", "Y81W", "Y102W", "K104E", "V146E", "S163T", "I168V", "L173M", "E174G", "E176A"], "p1": ["K10N"], "p17": ["A54T", "K76R", "I94V", "Q108R"], "p24": ["V11I", "E79D", "N120S", "L136M", "A217S"], "p6": ["Q26-", "-27K"], "pro": ["M64I", "V77I"], "rev": ["A8T", "E10A", "R14A", "A15T", "V16A", "P31S", "Q51H", "I59L", "S107A"], "tat": ["S23N", "L36V", "N40K", "G53R", "R54H", "S59T", "Q60R", "S61H", "R62S", "Q63K", "D64N", "P73S", "T77I"], "vif": ["N22H", "M29I", "Y30H", "F39C", "R63K", "D78A", "K92E", "L125V", "E127Q"], "vpr": ["R32K", "S94G"], "vpu": ["V21A", "K37E", "D40N", "N69D", "-73H", "-74V", "-75P", "L77V"]}, "labels": {"aa": "INT: I50T, K111R, V112A, I208L; RT-p51: T39L, K65R, D67N, K101E, V111I, A158S, E169D, R173S, Y181C, M184V, G190S, N211S, K219E, Q245V, A286T, V326I, D335G, R357Q; RT-p66: T39L, K65R, D67N, K101E, V111I, A158S, E169D, Y181C, M184V, G190S, N211S, K219E, Q245V, A286T, V326I, D335G, R357Q, V467I, V518I; gp120: T56M, N71D, -114S, -116V, -117S, -119N, -120V, -121S, -123S, V136I, Q142E, N157E, N158G, -159Q, N161S, A191S, A265S, H302Y, S306N, A308T, Q322G, I332N, D334A, N369S, T371G, -375G, -376N, -377S, -380T, M406I, N435S, G472R; gp41: V2I, L4M, V7F, M54L, R74S, S104N, I130L, D163N, F206S, T208I, R233T, F304V, I307T, V318I; nef: T28V, Q35R, S46R, E63D, Y81W, Y102W, K104E, V146E, S163T, I168V, L173M, E174G, E176A; p1: K10N; p17: A54T, K76R, I94V, Q108R; p24: V11I, E79D, N120S, L136M, A217S; p6: Q26-, -27K; pro: M64I, V77I; rev: A8T, E10A, R14A, A15T, V16A, P31S, Q51H, I59L, S107A; tat: S23N, L36V, N40K, G53R, R54H, S59T, Q60R, S61H, R62S, Q63K, D64N, P73S, T77I; vif: N22H, M29I, Y30H, F39C, R63K, D78A, K92E, L125V, E127Q; vpr: R32K, S94G; vpu: V21A, K37E, D40N, N69D, -73H, -74V, -75P, L77V"}}}, {"name": "CRF63_02A6_NODE_0000003", "node_attrs": {"div": 0.12172, "clade_membership": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["A618C", "A619G", "T763C", "G1192A", "C2047T", "G2068A", "T2071C", "A2203C", "C2503T", "G2509A", "C2521T", "A2539G", "A2579G", "G2580C", "T2581A", "T2612A", "C2613G", "A2626G", "T2632A", "T2638C", "C2644T", "C2653T", "C2665G", "T2671C", "A2686G", "T2779C", "A2923G", "T3034G", "A3165G", "C3266T", "A3279G", "A3292C", "T3303C", "A4112G", "A4243G", "A4688G", "A4878G", "T4914C", "T4938A", "C5491T", "C5538T", "T5568C", "T5956C", "T6021C", "A6164T", "-6171A", "-6180T", "C6193T", "A6206-", "G6224-", "T6263A", "C6692G", "G6819A", "-6983G", "-6984T", "-6985G", "A7007-", "G7026A", "A7152G", "G7343A", "G7369A", "C7463A", "T7642C", "A7700G", "G8019A", "C8077T", "T8094C", "G8424A", "C9068T"], "INT": ["I113V"], "RT-p51": ["E36D", "S162A", "K395R", "E399D", "M403T"], "RT-p66": ["E36D", "S162A", "S173R", "K395R", "E399D", "M403T"], "gp120": ["-105D", "L137I", "N372G", "S373N", "-384D", "R391K", "-433S"], "gp41": ["A14T", "Y108K", "S239N", "V264A"], "p17": ["K95R"], "p24": ["V11T", "R154K"], "rev": ["A8V", "I18T", "P77S"], "vif": ["I98V", "Y110H", "S118T"], "vpu": ["-75A"]}, "labels": {"aa": "INT: I113V; RT-p51: E36D, S162A, K395R, E399D, M403T; RT-p66: E36D, S162A, S173R, K395R, E399D, M403T; gp120: -105D, L137I, N372G, S373N, -384D, R391K, -433S; gp41: A14T, Y108K, S239N, V264A; p17: K95R; p24: V11T, R154K; rev: A8V, I18T, P77S; vif: I98V, Y110H, S118T; vpu: -75A"}}, "children": [{"name": "CRF63_02A6_NODE_0000004", "node_attrs": {"div": 0.12390999999999999, "clade_membership": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "T1172C", "A1697G", "G4673A", "C4992T", "C5237T", "T5277G", "-6169A", "-6170T", "A6197-", "T6199-", "G6273A", "A6327G", "G6329C", "C6331G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6855A", "C6859A", "-6977A", "G6990-", "A7701G", "A7818G", "G8036T", "G8829T"], "gp120": ["D29E", "R140K", "N335K", "-374S", "-375T", "-376G", "-377V", "N434T", "T436E", "N437T"], "gp41": ["E133G", "K172R", "V245F", "F340L"], "rev": ["C63F"], "vif": ["M29I"], "vpr": ["H45Y", "I58R"]}, "labels": {"aa": "gp120: D29E, R140K, N335K, -374S, -375T, -376G, -377V, N434T, T436E, N437T; gp41: E133G, K172R, V245F, F340L; rev: C63F; vif: M29I; vpr: H45Y, I58R"}}, "children": [{"name": "JN230353", "node_attrs": {"div": 0.13404, 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V51A, V98I, E117D, T118S, S130R, R160K; vpr: G41A, R85P; vpu: K41Q, M65-, E66-, V67M, N69V, -72G, -73N, -74Y, L76P"}}}]}, {"name": "CRF63_02A6_NODE_0000005", "node_attrs": {"div": 0.12283, "clade_membership": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["C4428T", "A7158G", "A7161C", "T7162A", "-7163A", "-7164A", "-7165T", "A7628G"], "INT": ["T218I"], "gp120": ["-159N", "A313T"], "gp41": ["N109D", "D129E"]}, "labels": {"aa": "INT: T218I; gp120: -159N, A313T; gp41: N109D, D129E"}}, "children": [{"name": "CRF63_02A6_NODE_0000006", "node_attrs": {"div": 0.12622, "clade_membership": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["C513A", "A521C", "A579G", "A2925C", "G2926A", "A3563G", "C4925A", "G5620C", "G5861A", "C5869A", "C5950T", "T5986C", "C6023A", "G6029A", "A6158G", "-6169C", "-6170T", "-6195G", "-6206A", "-6213T", "-6218A", "-6219A", "-6220C", "-6221A", "-6222G", "-6223T", "-6224A", "-6226C", "T6242A", "A6326G", "A6333G", "T6457G", "-6697A", 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"N261T", "S263A", "K277I", "I279V", "K312N", "K326E", "I332N", "N335K", "T344-", "T345-", "H346-", "T347-", "F348-", "N349-", "-368N", "G372R", "N373V", "-375A", "-376A", "-377D", "N378M", "-379N", "-380T", "-381T", "K391R", "L425I", "N432I", "S433G", "N435R"], "gp41": ["R122K", "A151E", "T156A", "L277R", "A281V", "A290V", "D305N", "I307T", "A310V"], "nef": ["E63D", "E108D", "E152D"], "p17": ["T53S"], "p2": ["N11S"], "p24": ["T11I", "T171A", "R203K", "P207S"], "p6": ["A39T", "*50L"], "pro": ["D37N", "C67H"], "rev": ["A15V", "V16A", "Q24E"], "tat": ["P70R"], "vif": ["E37Q", "S95N", "L109M", "I128L", "K176E"], "vpr": ["Q3R"], "vpu": ["E5Q", "A7V", "V14I", "K41Q", "N69V", "A75-", "L76-", "L77-", "D78-", "D79-", "N80-", "N81-", "V82-"]}, "labels": {"aa": "INT: V32I, L63V, K240R; RT-p51: E40D, S68G, Q278R, K356R, K431R; RT-p66: E40D, S68G, Q278R, K356R, K431R, R461K; gp120: I40V, E59I, T104Y, N108K, -109V, -110N, -111N, K141R, P155H, N157D, N158D, N159G, -160Q, Y163T, R164K, L165N, I166S, N167S, V180I, G240E, T243K, N261T, S263A, K277I, I279V, K312N, K326E, I332N, N335K, T344-, T345-, H346-, T347-, F348-, N349-, -368N, G372R, N373V, -375A, -376A, -377D, N378M, -379N, -380T, -381T, K391R, L425I, N432I, S433G, N435R; gp41: R122K, A151E, T156A, L277R, A281V, A290V, D305N, I307T, A310V; nef: E63D, E108D, E152D; p17: T53S; p2: N11S; p24: T11I, T171A, R203K, P207S; p6: A39T, *50L; pro: D37N, C67H; rev: A15V, V16A, Q24E; tat: P70R; vif: E37Q, S95N, L109M, I128L, K176E; vpr: Q3R; vpu: E5Q, A7V, V14I, K41Q, N69V, A75-, L76-, L77-, D78-, D79-, N80-, N81-, V82-"}}}, {"name": "KJ197201", "node_attrs": {"div": 0.14812, "accession": "KJ197201", "clade_membership": {"value": "CRF63_02A6"}, "country": {"value": "RU"}, "date": {"value": 2013.0}, "Strain_name": {"value": "RU_8169"}, "LANL_subtype": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["G121T", "C150T", "A161G", "G354A", "T362C", "A417C", "C435T", "A461C", "C471A", "C482T", "A509G", "T536C", "C558A", "T571A", "C618A", "G619A", "C765T", "A986T", "C1055T", "A1193G", "G1272A", "A1382T", "T1444C", "G1474A", "A1529T", "G1552A", "C1615A", "T1741C", "G1769A", "G1771A", "A1918G", "A1926G", "T1986A", "C2203T", "A2272C", "A2320G", "T2456C", "A2519G", "A2627T", "G2710A", "C2715A", "T2728G", "A2734G", "A2911G", "C3095G", "G3188A", "G3206A", "G3236A", "G3279A", "G3304A", "A3370G", "C3808A", "A4384G", "A4495G", "A4650C", "T4655C", "G4697A", "T4703G", "C4761T", "T4832C", "A4858G", "A4861G", "G4893C", "C4898T", "C4914T", "A4938G", "C4977A", "G5014A", "G5059A", "G5065A", "C5149T", "G5179A", "T5182A", "C5237T", "T5260C", "A5291C", "A5305G", "G5308A", "T5412G", "T5475C", "G5484A", "T5538C", "A5614C", "A5622T", "C5660T", "T5739G", "G5755A", "G5851A", "T5941A", "T6007C", "A6030C", "C6115T", "A6176C", "G6179A", "T6180A", "A6182G", "C6183T", "T6184C", "A6185T", "A6186C", "A6192G", "A6197G", "-6198T", "T6199C", "-6200T", "-6201C", "-6202T", "-6203A", "-6204A", "-6205C", "-6207G", "-6208T", "-6209A", "-6210A", "-6211T", "-6212G", "-6214C", "-6215T", "-6216C", "-6217T", "-6225A", "C6230A", "C6233T", "C6238T", "A6251G", "G6260T", "A6268G", "G6280A", "A6324C", "T6328A", "T6364G", "C6397T", "A6442G", "G6583A", "G6640A", "T6658C", "A6669G", "C6713A", "G6716T", "C6717T", "A6718C", "T6720A", "C6721T", "T6722G", "A6723C", "T6724A", "G6725A", "A6728G", "C6729G", "A6730T", "G6732A", "T6733A", "C6777A", "A6778T", "A6780C", "C6841A", "A6881G", "-6887T", "C6966A", "A6989G", "C6993T", "-6995G", "-6996A", "-6997C", "-6998C", "-6999C", "-7000T", "-7001A", "-7002A", "-7003C", "G7004-", "C7006-", "C7008-", "T7009-", "G7198A", "G7225A", "T7255G", "A7258G", "A7268G", "A7296G", "A7369G", "C7486T", "G7513A", "A7590G", "C7625A", "T7630G", "T7645G", "G7688A", "G7717A", "A7732C", "G7765A", "A7772G", "A7773G", "A7782G", "T7796A", "T7867A", "G7995A", "C8009A", "G8017C", "A8019C", "A8023C", "A8029G", "G8030A", "C8031G", "G8036A", "T8047C", "G8098A", "C8120A", "G8125A", "C8131G", "T8182A", "A8228G", "T8239C", "T8348A", "T8366G", "C8382A", "G8388A", "G8393A", "C8425T", "C8507T", "A8522G", "T8567C", "G8590C", "C8595G", "A8636T", "C8640A", "A8823G", "A8874G", "G8893A", "A8894G", "T9029C"], "INT": ["D11E", "I203M"], "RT-p51": ["Y121H", "I142V", "I178L", "A207D", "N211K", "Q334E", "V365I", "V371M", "V381I", "R395K"], "RT-p66": ["Y121H", "I142V", "I178L", "A207D", "N211K", "Q334E", "V365I", "V371M", "V381I", "R395K"], "gp120": ["D29E", "E59T", "T104S", "N108H", "-109N", "-110V", "-111S", "N113S", "-115V", "-116S", "-117N", "-118S", "-119N", "-120V", "-121S", "-122N", "-124N", "L126I", "M133V", "V136L", "N157A", "-160S", "N161S", "N272S", "Q287K", "A288F", "F289Y", "Y290A", "A291T", "T292G", "G293E", "D294I", "A308D", "E309A", "D334A", "I343V", "T345S", "T371N", "-374S", "-376G", "-377V", "-382G", "-383I", "N434T", "T436E", "N437T", "E438-", "T439-", "E481G"], "gp41": ["N96S", "D109E", "N114K", "E129N", "E143D", "N157G", "N160S", "S165T", "F188L", "R231K", "N239T", "A243S", "V245I", "L273I", "I309V", "F340L"], "nef": ["S8R", "P14T", "V16I", "T28I", "G83A", "L85V", "E98D", "L100I", "N161D", "R178G", "R184K"], "p17": ["V7I", "K28Q", "E42D", "L46I", "F79Y", "R95K"], "p2": ["V7A"], "p24": ["H12Y", "V181I"], "p6": ["I21T", "R31K"], "p7": ["R3K", "E21D", "R29K", "T50N"], "pro": ["K43R", "L63H"], "rev": ["V8A", "A54E", "E57H", "I59L", "S61E", "C63Y", "S67P", "D84N", "A91D", "G93R", "Q95E", "S112T"], "tat": ["N12K"], "vif": ["N22H", "F39L", "Q91R", "K92R", "A103P", "H110Y", "T118A", "P131T", "G143E", "R158K", "R160K", "S188L"], "vpr": ["H45Y", "I63L"], "vpu": ["T3P", "E5H", "A18V", "D44E", "A50T", "-70Y", "V82M"]}, "labels": {"aa": "INT: D11E, I203M; RT-p51: Y121H, I142V, I178L, A207D, N211K, Q334E, V365I, V371M, V381I, R395K; RT-p66: Y121H, I142V, I178L, A207D, N211K, Q334E, V365I, V371M, V381I, R395K; gp120: D29E, E59T, T104S, N108H, -109N, -110V, -111S, N113S, -115V, -116S, -117N, -118S, -119N, -120V, -121S, -122N, -124N, L126I, M133V, V136L, N157A, -160S, N161S, N272S, Q287K, A288F, F289Y, Y290A, A291T, T292G, G293E, D294I, A308D, E309A, D334A, I343V, T345S, T371N, -374S, -376G, -377V, -382G, -383I, N434T, T436E, N437T, E438-, T439-, E481G; gp41: N96S, D109E, N114K, E129N, E143D, N157G, N160S, S165T, F188L, R231K, N239T, A243S, V245I, L273I, I309V, F340L; nef: S8R, P14T, V16I, T28I, G83A, L85V, E98D, L100I, N161D, R178G, R184K; p17: V7I, K28Q, E42D, L46I, F79Y, R95K; p2: V7A; p24: H12Y, V181I; p6: I21T, R31K; p7: R3K, E21D, R29K, T50N; pro: K43R, L63H; rev: V8A, A54E, E57H, I59L, S61E, C63Y, S67P, D84N, A91D, G93R, Q95E, S112T; tat: N12K; vif: N22H, F39L, Q91R, K92R, A103P, H110Y, T118A, P131T, G143E, R158K, R160K, S188L; vpr: H45Y, I63L; vpu: T3P, E5H, A18V, D44E, A50T, -70Y, V82M"}}}]}, {"name": "CRF63_02A6_NODE_0000007", "node_attrs": {"div": 0.13577999999999998, "clade_membership": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["A261G", "A368G", "A488T", "C539T", "G607A", "T614G", "T641G", "A839G", "C897T", "C1091T", "C1118T", "-1455G", "-1456G", "A1458-", "A1459-", "T1520C", "G1532A", "G1552A", "A1670G", "A1742G", "A1743G", "G1794A", "A1867G", "T1868C", "A2014C", "A2215C", "T2236C", "C2356T", "A2392G", "C2452T", "C2485T", "T2499C", "A2519G", "T2740C", "G2755A", "A2773C", "G3211A", "G3236A", "T3253C", "C3292T", "G3494A", "T3497A", "G3508A", "G3595A", "C3610T", "G4146A", "C4270A", "G4273A", "A4696G", "T4959G", "G5131A", "T5188G", "A5200G", "A5240G", "T5254C", "G5336A", "G5375A", "A5396G", "G5493A", "G5533A", "C5615A", "C5641T", "G5647A", "A5729G", "T5763C", "G5775A", "T5781A", "G5783A", "A5867C", "G5917T", "T5953C", "T6164-", "C6165-", "T6166-", "-6169T", "A6175T", "T6181C", "A6182T", "A6188G", "A6189T", "A6191T", "A6192C", "T6196C", "G6323A", "C6331-", "A6333C", "C6334T", "G6336A", "G6550A", "A6553G", "A6664G", "-6686A", "-6687G", "-6688T", "-6689A", "-6690T", "-6691A", "G6692C", "G6693A", "C6721T", "G6732A", "T6733C", "C6769A", "G6774A", "A6786G", "A6789G", "T6827G", "G6854A", "C6885T", "G6969-", "G6981A", "G6985A", "-7005A", "-7007A", "G7072A", "C7078T", "G7152C", "A7157G", "T7159G", "C7201T", "A7268G", "A7296G", "A7297G", "G7307A", "C7313A", "G7322T", "A7428G", "A7471G", "G7640A", "C7642A", "C7655T", "T7692A", "A7741G", "A7744G", "T7751C", "G7765A", "T7796A", "G7873A", "G8001A", "G8006A", "G8093A", "A8142G", "C8145T", "T8278A", "A8323T", "T8348G", "A8420G", "A8432G", "C8471T", "G8528A", "G8590C", "C8916A", "G8935A"], "INT": ["S124N"], "RT-p51": ["E40D", "I135T", "I142V", "V381I"], "RT-p66": ["E40D", "I135T", "I142V", "V381I", "V467I", "S468T"], "gp120": ["N5H", "K21N", "N108-", "N113-", "N161Q", "G278S", "D294I", "R307K", "N311S", "K312N", "L314-", "Q315-", "K316-", "V317-", "V318-", "T319-", "Q320-", "L321-", "Q322-", "K323-", "H324-", "F325-", "K326-", "N327-", "T328-", "D334T", "T344I", "G372-", "N373-", "-385T", "M406I", "S433T", "N435G", "E481G"], "gp41": ["V2I", "L4M", "V7F", "N42S", "K108Q", "D113K", "I130K", "S165T", "R233K", "V235I", "A264T", "E280G", "A281V"], "nef": ["G83A", "H192N", "R198K"], "p17": ["R91K", "D93E", "D102E"], "p2": ["N11G"], "p6": ["I21M", "T22A", "A39T"], "p7": ["R29K"], "rev": ["S82N"], "tat": ["N7S", "G53R"], "vif": ["E37G", "L125I", "E127G", "G182D"], "vpr": ["H28Q", "I46V"], "vpu": ["T3N", "V14I", "K41R", "D58E"]}, "labels": {"aa": "INT: S124N; RT-p51: E40D, I135T, I142V, V381I; RT-p66: E40D, I135T, I142V, V381I, V467I, S468T; gp120: N5H, K21N, N108-, N113-, N161Q, G278S, D294I, R307K, N311S, K312N, L314-, Q315-, K316-, V317-, V318-, T319-, Q320-, L321-, Q322-, K323-, H324-, F325-, K326-, N327-, T328-, D334T, T344I, G372-, N373-, -385T, M406I, S433T, N435G, E481G; gp41: V2I, L4M, V7F, N42S, K108Q, D113K, I130K, S165T, R233K, V235I, A264T, E280G, A281V; nef: G83A, H192N, R198K; p17: R91K, D93E, D102E; p2: N11G; p6: I21M, T22A, A39T; p7: R29K; rev: S82N; tat: N7S, G53R; vif: E37G, L125I, E127G, G182D; vpr: H28Q, I46V; vpu: T3N, V14I, K41R, D58E"}}, "children": [{"name": "MT334923", "node_attrs": {"div": 0.14109999999999998, "accession": "MT334923", "clade_membership": {"value": "CRF63_02A6"}, "country": {"value": "RU"}, "date": {"value": 2016.0}, "Strain_name": {"value": "RU_ERS_1015_2016"}, "LANL_subtype": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["A540C", "T1826C", "A1828T", "G1998A", "A2404C", "G2710A", "T2719C", "G3477A", "G3869A", "C4144T", "T4258C", "G4268A", "A4315T", "A4420G", "A4863G", "A4951C", "A4966G", "C4992T", "T5078C", "T5834C", "A5845C", "T6163-", "G6167-", "A6168-", "-6170C", "C6172G", "-6195C", "-6198G", "-6200A", "-6201A", "-6202C", "C6288A", "T6322A", "T6325A", "-6331G", "C6667A", "G6968-", "G6970-", "A6971-", "A6972-", "T6973-", "A6974-", "G6975-", "C6976-", "C6978-", "T6979-", "A7148G", "C7149A", "T7150G", "G8008A", "A8011C", "G8050A", "C8609T", "G8799A"], "INT": ["V32I", "V165I"], "RT-p51": ["K103N"], "RT-p66": ["K103N", "R461K"], "gp120": ["D105S", "-106N", "S145Y", "G293D", "-368N", "N378-"], "nef": ["V153I", "K198Q"], "p17": ["K69Q"], "p6": ["*50L"], "pro": ["C67Y"], "rev": ["R53H", "A54T", "I55L", "A68T"], "vif": ["R93G", "K122T", "I125V"], "vpu": ["-70Y", "L76P", "N80H"]}, "labels": {"aa": "INT: V32I, V165I; RT-p51: K103N; RT-p66: K103N, R461K; gp120: D105S, -106N, S145Y, G293D, -368N, N378-; nef: V153I, K198Q; p17: K69Q; p6: *50L; pro: C67Y; rev: R53H, A54T, I55L, A68T; vif: R93G, K122T, I125V; vpu: -70Y, L76P, N80H"}}}, {"name": "CRF63_02A6_NODE_0000008", "node_attrs": {"div": 0.14279999999999998, "clade_membership": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["G1139A", "G1394A", "G1990A", "C1996T", "C2605A", "G2613A", "A2614G", "G2626A", "A2632T", "C2638T", "T2644C", "T2653C", "G2665C", "C2671T", "G2686A", "A2727G", "T2728C", "A2925G", "G3034T", "G4642A", "C4652T", "C4742T", "G4786A", "G4799T", "A4805T", "A4807C", "G4817A", "G4856A", "G4878A", "T4883C", "A4892G", "G4904A", "C4910T", "C4914T", "A4938T", "G4959A", "G4965A", "A4967T", "T4969G", "C4996A", "C5050A", "C5052A", "C5056A", "A5086G", "C5091T", "G5558A", "C5584T", "A5804G", "-6164C", "-6165A", "-6166G", "A6171-", "A6173-", "-6223A", "-6969A", "G6990T", "C7690A", "T8032A", "T8215G", "A8636T", "A8699C", "A8708T", "C8720T", "C8723T", "A8726C", "C8934A"], "RT-p51": ["R173K", "N211S", "K277R"], "RT-p66": ["R173K", "N211S", "K277R"], "gp120": ["T104Q", "-380T"], "gp41": ["F304L"], "nef": ["E98D"], "pro": ["M64I"], "rev": ["S62T"], "tat": ["S61N", "P70S"], "vif": ["R19K", "R67K", "K74T", "V98I", "H110Y", "T118S", "G127N", "I128R", "S136P", "A137E", "T155K", "P156T", "T157K", "K167R"], "vpu": ["M65-", "E66-", "V67M", "N69V", "-72G", "-73N"]}, "labels": {"aa": "RT-p51: R173K, N211S, K277R; RT-p66: R173K, N211S, K277R; gp120: T104Q, -380T; gp41: F304L; nef: E98D; pro: M64I; rev: S62T; tat: S61N, P70S; vif: R19K, R67K, K74T, V98I, H110Y, T118S, G127N, I128R, S136P, A137E, T155K, P156T, T157K, K167R; vpu: M65-, E66-, V67M, N69V, -72G, -73N"}}, "children": [{"name": "MZ327296", "node_attrs": {"div": 0.16827999999999999, "accession": "MZ327296", "clade_membership": {"value": "CRF63_02A6"}, "country": {"value": "RU"}, "date": {"value": 2018.0}, "Strain_name": {"value": "RU_ERS_2574_2018"}, "LANL_subtype": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["G261A", "T303-", "A359G", "A417C", "T434C", "C513A", "A561C", "G614A", "C618A", "G632A", "C635T", "G641T", "G654A", "G656A", "A708G", "G1115A", "T1182C", "G1339A", "C1520T", "G1907A", "C2211A", "A2212T", "C2215A", "A3211G", "A3250G", "C3253T", "T3266C", "A3268G", "G3279A", "T3292A", "C3303T", "T3310C", "A3340G", "C3358T", "C3613T", "A3637G", "G3664A", "A3665G", "A3682C", "A3804G", "C3808A", "G3816A", "G3834A", "A3846G", "A3877G", "G3886A", "G3907A", "C3908T", "A3916G", "A3925G", "A3934G", "A3952G", "T3970C", "T3977C", "A3989G", "T3991A", "C3995A", "A4021C", "A4060G", "T4075C", "A4111G", "T4135C", "A4146G", "A4175G", "C4181A", "A4195G", "T4234C", "T4276G", "A4495G", "G4561A", "A4570C", "A4650C", "G4816A", "G4864A", "C4976A", "A5191G", "C5306A", "G5396A", "A5433G", "C5438A", "G5444A", "C5445T", "C5466T", "T5482G", "G5484T", "C5496A", "G5499A", "G5537A", "T5538C", "C5539A", "A5544C", "T5551C", "G5556C", "C5560A", "C5563A", "C5568T", "C5579T", "G5594A", "G5599C", "T5603A", "G5607A", "C5611T", "A5612C", "A5614C", "A5615C", "A5625C", "G5626T", "C5627A", "G5629T", "G5639C", "A5647G", "C5651T", "T5653G", "T5654C", "C5655T", "A5658C", "G5659A", "C5660T", "C5664A", "G5668A", "C5679T", "T5686G", "A5687G", "T5695A", "A5696T", "A5704G", "A5706G", "A5707C", "G5708T", "G5715A", "A5717G", "G5718A", "C5734A", "T5739G", "A5784G", "T5826C", "T5827C", "A5828T", "C5833T", "G5861A", "C5867A", "C5869T", "T5917G", "C5950A", "C5953T", "C5956T", "C5958A", "T5964C", "A6158G", "-6170G", "-6171T", "-6173T", "-6195C", "-6198G", "-6200A", "-6201A", "-6202T", "-6208A", "-6209A", "-6210T", "-6211G", "-6212C", "-6213T", "-6214A", "-6215A", "-6216T", "-6217G", "-6218T", "-6219C", "-6220T", "-6221C", "-6222T", "-6224C", "-6225C", "-6226A", "A6251G", "T6325C", "T6328C", 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"K524E", "E529D"], "gp120": ["A3T", "H5N", "N21K", "T35K", "V37A", "N102D", "-106H", "-107V", "-108Y", "-109N", "-110V", "-111S", "-112N", "-113V", "-114S", "-115T", "-116S", "M133V", "Q161-", "A191T", "T216S", "T243K", "I294D", "D297N", "H302Y", "N312K", "T313A", "-314L", "-315Q", "-316R", "-317V", "-318A", "-319T", "-320Q", "-321L", "-322Q", "-323K", "-325V", "-326K", "-327N", "-328T", "I332V", "H336S", "I343V", "I344T", "S360T", "N369-", "S370-", "T371-", "-379G", "-381E", "-382N", "-383S", "T387R", "N432T", "T433N", "N434G", "G435T", "T436N"], "gp41": ["D121E", "D163N", "T165S", "K172R", "L209P", "E215D", "K233R", "N239S", "V245A", "L263F", "T264I", "A268V", "L273F", "L329I"], "nef": ["T28I", "L76M", "Y81F", "A83G", "S163A"], "p17": ["K28Q", "L60I", "K76Q", "E102D", "V107I", "S125G"], "p24": ["R203K"], "pro": ["D37N"], "rev": ["V8T", "E10A", "R14T", "A15T", "T18I", "P30S", "T34S", "R53D", "A54S", "S77P", "N82H", "A91V"], "tat": ["S7N", "A21D", "S23N", "L36V", "N40K", "R54H", "S59P", "Q60H", "R62S", "Q63K", "P68L", "T76I", "N80I"], "vif": ["N22H", "Q73H", "R77K", "R93K", "S130R"], "vpr": ["L68M"], "vpu": ["Q2S", "N3P", "A7Y", "A8S", "G11A", "I14V", "A15V", "F16A", "A18I", "V21I", "Y27G", "Y30I", "I33V", "R34L", "K37R", "L43I", "D44E", "-74L", "L76F"]}, "labels": {"aa": "INT: E10G, D11E, R14K, R20K, N24S, I50M, I72V, L74I, N124S, N134D, Q136K, D167E; RT-p51: T39N, D40E, R395K, D399E, T403M; RT-p66: T39N, D40E, R395K, D399E, T403M, K524E, E529D; gp120: A3T, H5N, N21K, T35K, V37A, N102D, -106H, -107V, -108Y, -109N, -110V, -111S, -112N, -113V, -114S, -115T, -116S, M133V, Q161-, A191T, T216S, T243K, I294D, D297N, H302Y, N312K, T313A, -314L, -315Q, -316R, -317V, -318A, -319T, -320Q, -321L, -322Q, -323K, -325V, -326K, -327N, -328T, I332V, H336S, I343V, I344T, S360T, N369-, S370-, T371-, -379G, -381E, -382N, -383S, T387R, N432T, T433N, N434G, G435T, T436N; gp41: D121E, D163N, T165S, K172R, L209P, E215D, K233R, N239S, V245A, L263F, T264I, A268V, L273F, L329I; nef: T28I, L76M, Y81F, A83G, S163A; p17: K28Q, L60I, K76Q, E102D, V107I, S125G; p24: R203K; pro: D37N; rev: V8T, E10A, R14T, A15T, T18I, P30S, T34S, R53D, A54S, S77P, N82H, A91V; tat: S7N, A21D, S23N, L36V, N40K, R54H, S59P, Q60H, R62S, Q63K, P68L, T76I, N80I; vif: N22H, Q73H, R77K, R93K, S130R; vpr: L68M; vpu: Q2S, N3P, A7Y, A8S, G11A, I14V, A15V, F16A, A18I, V21I, Y27G, Y30I, I33V, R34L, K37R, L43I, D44E, -74L, L76F"}}}, {"name": "MZ427698", "node_attrs": {"div": 0.16723, "accession": "MZ427698", "clade_membership": {"value": "CRF63_02A6"}, "country": {"value": "RU"}, "date": {"value": 2018.0}, "Strain_name": {"value": "RU_ERS_2577_2018"}, "LANL_subtype": {"value": "CRF63_02A6"}}, "branch_attrs": {"mutations": {"nuc": ["-304T", "G386A", "A740G", "A762G", "C763T", "G776A", "G806A", "A818G", "T827C", "G839A", "A852T", "G878A", "A887G", "T890C", "T897C", "A899G", "A926T", "G932A", "A938G", "G962T", "A965C", "A968T", "C974T", "A978T", "C979T", "T988C", "T992G", "A1002T", "A1003T", "C1008G", "C1013G", "G1022A", "C1055T", "A1090G", "T1091C", "T1094C", "C1103T", "G1115C", "T1118C", "G1134A", "T1136C", "C1175T", "G1184A", "A1192G", "G1670A", "C1721T", "A1845G", "C1954T", "C2011T", "A2248G", "T2257C", "T2266C", "A2273G", "C2280T", "C2281T", "T2296C", "T2299C", "A2305G", "A2311G", "A2332G", "G2341A", "G2362A", "T2380C", "G2392T", "A2395G", "A2416G", "G2447A", "T2456G", "G2462A", "T2467C", "T2485C", "T2488C", "T2494A", "C2499T", "T2503C", "A2509G", "G2519A", "T2521C", "G2539A", "T2542C", "G2560A", "G2567T", "T2575C", "G2579T", "C2580G", "A2581T", "C2740T", "A2755G", "A2809G", "C3530T", "A3583G", "A4176G", "A4254G", "A4270C", "A4273G", "C4534T", "G4688A", "A4692G", "G4695A", "T4702C", "C4706T", "G4727A", "C4728A", "C4730T", "G4767A", "A4775G", "T4776C", "A4806G", "A4860G", "A4950G", "A5421G", "T5467A", "A5533G", "C5559T", "A5574G", "A5621T", "A5703G", "A5760G", "C5763T", "A5775G", "A5781T", "A5783G", "T5788G", "A5790G", "T5852G", "C5859T", "A5865G", "G5954A", "A5955C", "A5957C", "A6060G", "C6172-", "T6175A", "A6186C", "T6187C", "G6188-", "T6189-", "C6190-", "T6191-", "C6192-", "T6193-", "A6194-", "C6196-", "A6197-", "T6199-", "-6224G", "-6225T", "-6226C", "T6241C", "A6324C", "A6326G", "-6331A", "A6335C", "C6337G", "G6339A", "G6725A", "G6731A", "A6737G", "A6974C", "-6977A", "A7005G", "A7124T", "C7149G", "G7268A", "G7296A", "C7324A", "A8006G", "A8032G", "C8048T", "C8051A", "C8103T", "G8216A", "G8398A", "G8554A", "C8699T", "C8740T", "G8753A", "C8756A", "G8762A", "T8770A", "A8774G", "A8784G", "G8786T", "G8793C", "C8794A", "A8795G", "G8798A", "A8807G", "C8809A", "T8813A", "A8816G", "G8822A", "G8829A", "C8830G", "T8831C", "T8832C", "C8843T", "C8846A", "G8852A", "T8855C", "C8859A", "G8864T", "C8867T", "A8870G", "C8873A", "C8883T", "G8885A", "G8886A", "C8888G", "G8893A", "A8894G", "A8904C", "A8905G", "A8906C", "A8912T", "T8915C", "A8917C", "T8918A", "T8921C", "G8922A", "T8923C", "A8924G", "T8927C", "T9068C", "C9073T"], "INT": ["N134S", "K160R"], "RT-p51": ["I60V", "A62V", "V118I", "Y121D", "D123N", "T135I", "V142I", "A158S", "A162C"], "RT-p66": ["I60V", "A62V", "V118I", "Y121D", "D123N", "T135I", "V142I", "A158S", "A162C"], "gp120": ["A2V", "E4G", "D34T", "T35P", "K69R", "-160T", "S162N", "A291T", "G293N", "I295V", "-373N", "-374R", "-375T", "-376E", "-377V", "-379I", "-381G", "D384-", "I424L", "N432S", "G472R", "G481E"], "gp41": ["F7L", "I235V", "A267V", "D305N"], "nef": ["R19K", "R71K", "T133I", "F143Y", "M148V", "A151Q", "A156D", "L173M", "E174D", "D177E", "V182M", "R184K", "K188R", "N192T", "V194T"], "p24": ["T11V", "M15I", "T41S", "E79D", "T83L", "V86A", "H87Q", "N91F", "P93A", "N120S", "E128D", "V135I", "K154R"], "pro": ["E16G"], "rev": ["A15I", "K20R", "T62A", "S67F"], "tat": ["C31S", "R53G"], "vif": ["R36G", "G37R", "F39S", "H48N", "D61N", "T74A", "K92E", "K122E"], "vpu": ["E5V", "E58D", "E60D", "L61I", "-74Y", "V82G"]}, "labels": {"aa": "INT: N134S, K160R; RT-p51: I60V, A62V, V118I, Y121D, D123N, T135I, V142I, A158S, A162C; RT-p66: I60V, A62V, V118I, Y121D, D123N, T135I, V142I, A158S, A162C; gp120: A2V, E4G, D34T, T35P, K69R, -160T, S162N, A291T, G293N, I295V, -373N, -374R, -375T, -376E, -377V, -379I, -381G, D384-, I424L, N432S, G472R, G481E; gp41: F7L, I235V, A267V, D305N; nef: R19K, R71K, T133I, F143Y, M148V, A151Q, A156D, L173M, E174D, D177E, V182M, R184K, K188R, N192T, V194T; p24: T11V, M15I, T41S, E79D, T83L, V86A, H87Q, N91F, P93A, N120S, E128D, V135I, K154R; pro: E16G; rev: A15I, K20R, T62A, S67F; tat: C31S, R53G; vif: R36G, G37R, F39S, H48N, D61N, T74A, K92E, K122E; vpu: E5V, E58D, E60D, L61I, -74Y, V82G"}}}]}]}]}]}]}]}, {"name": "NODE_0000831", "node_attrs": {"div": 0.08494, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-49A", "A50G", "-161T", "T614C", "A866G", "G1552A", "A1567G", "C1613T", "G1794A", "C1903A", "A2119G", "G2459A", "A2498G", "C2503T", "A2579G", "G2580C", "T2581A", "A2626G", "T2632G", "C2644T", "A2677G", "T2723C", "G3037A", "T3059A", "T3175C", "A3205G", "C3808G", "C4079T", "C4144T", "C4181A", "C4396T", "G4573A", "G4677A", "A4682T", "A4694G", "T5018G", "A5090G", "G5099A", "T5102C", "A5396G", "A5462T", "G5463A", "A5796T", "G5830A", "C5833A", "C5862-", "A5863-", "C5869-", "A5881G", "T5911C", "C6184T", "T6290G", "G6339A", "A6346G", "G6578A", "T6634G", "A6669G", "A6823G", "A6840C", "C7020A", "C7156T", "-7162A", "A7177G", "A7268C", "G7269A", "G7270T", "G7440A", "A7590C", "G7594A", "C7625T", "G7873A", "T7877A", "T8008G", "T8251C", "G8254A", "C8294A", "T8366C", "C8385A", "G8407A", "T8411C", "T8440C", "A8458G", "G8590C", "A8701T", "C8812A", "G9128A"], "RT-p51": ["E122K", "I135V", "S162A", "S322T"], "RT-p66": ["E122K", "I135V", "S162A", "S322T"], "gp120": ["-111N", "S146A", "K150R", "V242I", "H280R", "K312N", "-380T", "P389Q", "V414E", "K472H"], "gp41": ["R46K", "V72L", "N96T", "S192T", "A290S", "H331N"], "nef": ["R22Q", "V33A", "K39R", "G83A", "T157N"], "p6": ["A39T"], "p7": ["R29K", "K34R"], "pro": ["D35E"], "rev": ["S54A"], "tat": ["N7S"], 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I292V, V293I, T294P, E297A, A376T, M403T, H483Y, R512K, K524Q, E527K, V548I; gp120: -110T, -114S, -116S, M133I, N159D, T255I, P263S, K265P, N272G, E309K, N311M, T319M, -328A, Q412R, G443A, H472P; gp41: K122R, E220G, G225E, S256L, T270S, I321L, R324A; nef: T28V, A50Q, E63D, H89F, M148L, V153I, E158K, R188S, F191L; p1: S9N; p17: T67A, I107E, Q113K, T115A, -126S, -127Q, -128V; p24: V83I, I91V, P92A; p6: I21V, -26R, K27-, G34E, N47S; rev: S67P, Q74P, D88-, C89-, G96Q, I109L; tat: S61G, K85E; vif: R17K, V65I, H73Q, T159K, R167A; vpr: E55A, R85P; vpu: V13I, D58E"}}, "children": [{"name": "results/subtype_trees/CRF95_02B.nwk", "node_attrs": {"div": 0.11884, "clade_membership": {"value": "CRF95_02B"}}, "branch_attrs": {"mutations": {"nuc": ["G378T", "A500G", "A509G", "T596C", "C697A", "G709A", "G908A", "A995T", "A1002G", "G1134A", "T2476C", "T2542G", "T2597C", "A2743C", "A3079G", "G3127A", "A3230T", "G3508C", "T3535A", "T3566G", "T3577C", "A3592T", "G3595A", "G3616A", "A3760G", "G5018A", 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"S86-", "E87-", "G90-", "T91-"], "tat": ["P84Q"], "vpu": ["-69Y"]}, "labels": {"aa": "RT-p51: S379C; RT-p66: S379C, E471D, H480Q, S491A; gp120: K18R, N64E, N102E, T104H, -112S, -115S, I126V, V153I, K203E, E240K, N378-, -379N, -382G, -383S, -384N, E479G; gp41: K56R, T94P, N109K, V187I, V190I, A267L, A268G, R269H, V271S, E272L, L273Q, L274G, G275L; nef: Q15K, R21A, Y120F; p17: A15S, A121D, S125N; p24: V135I; rev: A68P, C85-, S86-, E87-, G90-, T91-; tat: P84Q; vpu: -69Y", "clade": "CRF95_02B"}}, "children": [{"name": "MH666157", "node_attrs": {"div": 0.16758, "accession": "MH666157", "clade_membership": {"value": "CRF95_02B"}, "country": {"value": "NG"}, "date": {"value": 2014.0}, "Strain_name": {"value": "20168v01"}, "LANL_subtype": {"value": "CRF95_02B"}}, "branch_attrs": {"mutations": {"nuc": ["A359G", "T377C", "A417C", "A470T", "C476T", "C482T", "A492T", "A530G", "T531C", "A579C", "C603A", "C614A", "A632G", "A680G", "G687A", "G706A", "A725G", "A764T", "G771C", "G791A", "G803A", 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"P25L", "R31G", "E34G", "S47N"], "pro": ["N37S"], "rev": ["E32G", "I55L", "I59L", "P68S", "P72H", "Q96G", "S99G", "S103P", "I108F"], "tat": ["P3L", "A21P", "K29L", "V69I"], "vif": ["N22H", "K36S", "F39Y", "V51A", "D61E", "D78A", "R90K", "S95N", "I98V", "Q105R", "R158E", "K159R", "K160R"], "vpr": ["E48D", "V70I", "N91H"], "vpu": ["S3T", "E5V", "M65I", "-74H", "-75N", "-76I", "-77L", "L82W"]}, "labels": {"aa": "INT: R14K, S119P, T122I, A124N, G163S, Y227F, L234I, D256E, A265V, R269K; RT-p51: K49R, K277R, D335G, K356R, K357R, V372A, T376S; RT-p66: K49R, K277R, D335G, K356R, K357R, V372A, T376S, Y483H; gp120: -3G, E4N, N5-, N52D, Q54R, H57P, M67T, K93S, -105T, -106P, -109I, N111Y, I133V, L137V, Q142E, V144K, I156L, N157D, N160S, N161S, S162Q, I173T, N201K, S236R, T250S, N261K, G272N, K277Q, R280S, Q287R, Q300K, K307R, M319K, A328N, T329A, I331V, T334N, N335S, G361E, N369-, T371-, T380A, -381N, T385D, Q389N, M406I, E414V, L424I, N432K, N433S, N435A; gp41: S107T, D113E, Q147N, D163S, M176I, I193M, V197A, R214G, E225G, S251N, L254I, R259Q, A281V, I301T, I307V, A325T, F340A, L344W; nef: W5C, S8N, V16I, I20M, V28E, R39K, S45I, D63E, Y102W, H116N, I133T, C142L, I153V, M173I, S187T, L191R, K192T, I194M; p1: S8P; p17: K28Q, T53S, S66P, I82L, Q90K, D93E, D121N, S124N; p2: Q8N; p24: S14P, A31G, E79D, L111V, I115M, R154K, E180D, S200T, A204G, P207S, T210S, V230I; p6: F15L, P25L, R31G, E34G, S47N; pro: N37S; rev: E32G, I55L, I59L, P68S, P72H, Q96G, S99G, S103P, I108F; tat: P3L, A21P, K29L, V69I; vif: N22H, K36S, F39Y, V51A, D61E, D78A, R90K, S95N, I98V, Q105R, R158E, K159R, K160R; vpr: E48D, V70I, N91H; vpu: S3T, E5V, M65I, -74H, -75N, -76I, -77L, L82W"}}}, {"name": "CRF95_02B_NODE_0000001", "node_attrs": {"div": 0.13239, "clade_membership": {"value": "CRF95_02B"}}, "branch_attrs": {"mutations": {"nuc": ["G424A", "A503G", "C684A", "G776A", "T1064G", "G1139A", "T1245C", "G1354C", "-1455A", "-1456C", "-1457T", "C1460T", "T1752C", "C1865T", "A2203T", "G2215A", "G2389A", "G2600A", "A2601G", "G2632A", "A2641G", "C3223T", "G3293T", "G3467A", "T3526A", "A3562G", "C3567T", "G3766A", "A3944G", "G4186A", "A4495G", "G5036A", "T5148C", "T5188G", "A5200G", "A5215G", "G5267A", "T5448C", "T5462A", "A5564C", "A5689T", "G5715A", "G5729A", "A5738C", "A5957G", "T5964C", "A6031C", "A6164C", "C6165A", "-6167G", "T6169C", "-6170T", "-6177A", "-6180C", "A6206-", "C6238A", "T6252C", "A6275C", "A6276G", "C6293T", "T6294A", "G6323A", "G6329A", "-6340G", "G6345T", "G6466A", "C6523T", "G6550A", "G6577A", "A6682G", "A6730T", "G6774A", "A6788G", "T6793C", "T6794C", "-6830G", "-6831A", "-6832A", "A6844C", "-6972A", "-6973T", "-6975C", "-6976A", "-6977T", "-6978C", "-6979A", "-6980G", "-6985T", "A6992T", "T6994A", "-6995G", "-6996A", "A7032G", "A7044G", "T7045A", "A7138G", "A7151G", "A7163-", "A7275G", "G7633A", "G7657A", "A7672G", "A7943C", "C8009A", "A8076G", "C8078A", "A8080T", "A8163G", "T8206C", "G8255A", "T8278A", "G8317A", "A8323T", "A8407G", "A8423G", "T8568A", "A8693G", "T8903G"], "INT": ["S57G"], "RT-p51": ["E36D", "E169R", "A400L"], "RT-p66": ["E36D", "E169R", "A400L", "V458I", "A491V"], "gp120": ["T35A", "V37A", "E59D", "-105D", "-109T", "N128K", "I133T", "K141R", "L147Y", "R164M", "A288T", "D294I", "N312D", "-326E", "T330N", "-381S", "K393R", "N397R", "N433D", "K474R"], "gp41": ["D110E", "H258R", "R259S", "Q273K", "N287S", "V318I"], "nef": ["Q22R", "Q50H", "L76M", "S187R", "I194T"], "p17": ["R30K", "Q117K"], "p2": ["N11T", "-12N"], "p24": ["S14A", "M15I", "G208A"], "p6": ["S24P"], "rev": ["E32A", "A54E", "P77Q", "I78F"], "tat": ["Q63P", "R78S"], "vif": ["S188P"], "vpr": ["F15S", "H28Q", "A55T", "N91G"], "vpu": ["I28L", "R41K", "D44A", "-70D", "L82*"]}, "labels": {"aa": "INT: S57G; RT-p51: E36D, E169R, A400L; RT-p66: E36D, E169R, A400L, V458I, A491V; gp120: T35A, V37A, E59D, -105D, -109T, N128K, I133T, K141R, L147Y, R164M, A288T, D294I, N312D, -326E, T330N, -381S, K393R, N397R, N433D, K474R; gp41: D110E, H258R, R259S, Q273K, N287S, V318I; nef: Q22R, Q50H, L76M, S187R, I194T; p17: R30K, Q117K; p2: N11T, -12N; p24: S14A, M15I, G208A; p6: S24P; rev: E32A, A54E, P77Q, I78F; tat: Q63P, R78S; vif: S188P; vpr: F15S, H28Q, A55T, N91G; vpu: I28L, R41K, D44A, -70D, L82*"}}, "children": [{"name": "MH666156", "node_attrs": {"div": 0.15403, "accession": "MH666156", "clade_membership": {"value": "CRF95_02B"}, "country": {"value": "NG"}, "date": {"value": 2015.0}, "Strain_name": {"value": "20268v01"}, "LANL_subtype": {"value": "CRF95_02B"}}, "branch_attrs": {"mutations": {"nuc": ["A398G", "C477T", "A491C", "A521G", "G534A", "C558A", "T571A", "A674C", "G677A", "C707T", "A774G", "T788C", "T852A", "A914G", "T1055C", "C1062A", "T1214C", "A1400C", "T1439C", "C1498T", "A1697G", "T1796C", "G1839A", "T1854C", "C1873T", "T1975C", "T1986C", "A1988C", "T2086C", "G2119A", "T2158C", "C2211T", "A2212G", "T2245A", "A2284C", "C2485T", "G2677A", "T2737G", "T2873C", "A2887G", "G2902A", "A2920G", "C2942A", "A2972G", "A3059G", "A3283C", "A3522G", "A3637G", "G3643A", "A3748G", "G3816A", "C3908T", "T4006A", "A4106G", "T4144C", "C4569T", "T4633G", "A4636G", "G4642A", "T4678C", "A4721G", "G4727A", "T4769G", "A4854G", "G4855A", "C4902T", "C4914T", "C4965G", "A4976C", "C5052T", "T5084C", "C5102T", "A5285G", "A5302G", "G5534A", "G5565A", "A5575G", "T5628G", "C5641T", "T5778C", "G5808T", "A5825-", "T5826-", "T5869G", "C5923T", "G5948A", "A6087G", "C6109T", "-6171T", "-6172G", "-6173A", "A6174C", "C6175A", "T6181C", "A6182T", "T6187C", "-6189A", "-6195G", "T6196C", "A6197T", "G6198C", "T6199C", "-6200T", "-6201C", "-6202T", "-6203A", "-6204G", "-6205G", "A6237G", "A6254T", "T6287G", "G6303A", "A6327G", "A6330G", "A6332C", "T6334G", "G6336A", "A6339G", "C6370T", "C6416T", "A6442G", "A6491G", "A6631G", "C6647G", "A6684G", "G6731A", "A6734G", "C6758T", "G6771A", "C6925T", "-6956A", "-6957G", "-6958C", "A6962-", "T6967G", "-6968A", "-6970C", "C6982A", "T6984C", "A6990C", "-6997C", "-6998G", "-6999C", "-7003T", "-7005A", "C7008T", "T7009A", "A7010-", "T7011-", "A7012-", "A7045G", "A7066G", "G7072A", "G7089A", "A7107T", "A7149C", "-7163G", "-7164A", "C7201T", "G7225A", "G7310-", "G7311-", "A7312-", "C7429T", "T7462G", "T7622A", "A7628C", "G7677A", "T7692G", "A7700G", "A7701C", "A7705C", "G7759A", "T7801A", "A7807G", "A7818G", "T7825C", "C7874T", "T7875G", "A7880G", "G7997A", "A8023G", "A8029G", "G8030C", "A8032G", "C8048A", "G8079A", "T8092A", "A8162G", "T8167C", "A8191G", "C8251T", "C8277T", "T8390G", "G8424A", "A8426G", "A8461G", "G8487T", "A8489G", "A8503C", "A8549T", "A8568G", "A8584T", "T8595G", "A8653G", "C8740T", "C8775T", "C8794T", "G8893A", "A8918G", "C8927T", "T8972C", "G9005A"], "INT": ["R14K", "K111E", "A124T", "A265V", "D286E"], "RT-p51": ["T39M", "F214L", "L283I", "I293V", "T322A", "E396D"], "RT-p66": ["T39M", "F214L", "L283I", "I293V", "T322A", "E396D", "K476R"], "gp120": ["N5K", "A32T", "E78G", "-106L", "-107T", "T110S", "S112N", "-117R", "K128R", "T134S", "Y145D", "R150K", "N158S", "D159S", "N160Q", "S162R", "H188Y", "N213D", "P265A", "K277R", "G293S", "I294V", "H302Y", "S306N", "-368S", "-370T", "T371S", "S383P", "M406I", "R412Q", "E418V", "N432T", "N437D"], "gp41": ["G3L", "L4-", "H53Q", "M54L", "S107T", "K109H", "S125N", "I130R", "N133A", "N166K", "K172R", "L191C", "I193V", "D232N", "A243P", "L249I", "S259N", "F263L", "S287G", "A325V"], "nef": ["V28M", "H40R", "A49S", "D54A", "M76V", "Y81F", "F85V", "K104R", "A151V", "R184K"], "p17": ["P48S", "E52D", "A67T", "L75I", "F79Y", "K113N"], "p24": ["I15V", "S41T", "L111M"], "p7": ["T11I"], "pro": ["R14K", "L19P", "L63P", "I64L"], "rev": ["D7N", "R17Q", "R50K", "I59V", "S61A", "T62A", "P67H", "C82S", "E105G", "S107P", "K115E"], "tat": ["R53K", "N67D"], "vif": ["M16R", "K17R", "R19K", "I31T", "D61E", "R90E", "H110Y", "Q127E", "R130S", "P156S"], "vpr": ["I61V"], "vpu": ["M67I", "D70N", "-71I", "-72L"]}, "labels": {"aa": "INT: R14K, K111E, A124T, A265V, D286E; RT-p51: T39M, F214L, L283I, I293V, T322A, E396D; RT-p66: T39M, F214L, L283I, I293V, T322A, E396D, K476R; gp120: N5K, A32T, E78G, -106L, -107T, T110S, S112N, -117R, K128R, T134S, Y145D, R150K, N158S, D159S, N160Q, S162R, H188Y, N213D, P265A, K277R, G293S, I294V, H302Y, S306N, -368S, -370T, T371S, S383P, M406I, R412Q, E418V, N432T, N437D; gp41: G3L, L4-, H53Q, M54L, S107T, K109H, S125N, I130R, N133A, N166K, K172R, L191C, I193V, D232N, A243P, L249I, S259N, F263L, S287G, A325V; nef: V28M, H40R, A49S, D54A, M76V, Y81F, F85V, K104R, A151V, R184K; p17: P48S, E52D, A67T, L75I, F79Y, K113N; p24: I15V, S41T, L111M; p7: T11I; pro: R14K, L19P, L63P, I64L; rev: D7N, R17Q, R50K, I59V, S61A, T62A, P67H, C82S, E105G, S107P, K115E; tat: R53K, N67D; vif: M16R, K17R, R19K, I31T, D61E, R90E, H110Y, Q127E, R130S, P156S; vpr: I61V; vpu: M67I, D70N, -71I, -72L"}}}, {"name": "MH666155", "node_attrs": {"div": 0.15009, "accession": "MH666155", "clade_membership": {"value": "CRF95_02B"}, "country": {"value": "NG"}, "date": {"value": 2015.0}, "Strain_name": {"value": "20428v01"}, "LANL_subtype": {"value": "CRF95_02B"}}, "branch_attrs": {"mutations": {"nuc": ["A499C", "G524A", "A672G", "C713T", "A725G", "A810G", "G866A", "A869G", "C947T", "G1016A", "A1017T", "A1028G", "C1178T", "T1182C", "G1339A", "G1355A", "A1442G", "A1657G", "C1693T", "C1761A", "A2059G", "A2089G", "C2105T", "G2473A", "G2675A", "G2707A", "A2727G", "G2837A", "A2929G", "C2941A", "C2985A", "A3145G", "A3192G", "A3200G", "G3205A", "A3217G", "A3268G", "A3292C", "A3361G", "C3391A", "G3398A", "C3508T", "G3566A", "A3622G", "A3651G", "A3772G", "A3802G", "G3859A", "T4039C", "G4060A", "A4084G", "A4145G", "T4165C", "A4255G", "T4396C", "C4428T", "T4543A", "A4561G", "A4677G", "A4692C", "A4693G", "G4695A", "G4696A", "G4737A", "C5056T", "G5060A", "G5199A", "A5248G", "C5359G", "C5384T", "T5415C", "T5467G", "G5468T", "C5530T", "C5559T", "G5620C", "G5748A", "G5781T", "T5796G", "-5824T", "T5827G", "A5833G", "C5911T", "A5965G", "G6074A", "A6088G", "A6179G", "T6184A", "-6189G", "A6191T", "A6192C", "A6194T", "-6195C", "T6250C", "C6256T", "A6257G", "A6281C", "T6285C", "G6286A", "T6328A", "A6333G", "A6349G", "A6456G", "T6457G", "C6477T", "T6582G", "T6618C", "C6660T", "C6729A", "G6732A", "T6733A", "T6738C", "A6774C", "A6776G", "C6777A", "T6849C", "C6855A", "T6856G", "T6860G", "A6868T", "-6963G", "-6964T", "-6968T", "-6970G", "C6983A", "A6990G", "-6997A", "G7004-", "C7006-", "A7007C", "C7014T", "A7027G", "A7158C", "T7159A", "C7161A", "A7162T", "T7165-", "A7219G", "A7265G", "C7266G", "C7269A", "T7270G", "A7276G", "G7285A", "C7313A", "G7315A", "A7396G", "A7399G", "T7411G", "C7463A", "A7589G", "T7630G", "A7641G", "T7642A", "C7684T", "G7688A", "G7777A", "A7846G", "C7936T", "C8044G", "G8055A", "C8069T", "A8154T", "A8196G", "A8269G", "T8292G", "C8293T", "G8487A", "C8490T", "A8525G", "C8543A", "G8558A", "A8570G", "C8705T", "C8794A", "T8813C", "T8832C", "A8837G", "G8852A", "A8904G", "T8913G", "G8997-"], "INT": ["T218I", "D256E"], "RT-p51": ["P4S", "E194K", "K211R", "D248N", "A297E", "K366R", "T369A", "E399D", "D432E", "V435I"], "RT-p66": ["P4S", "E194K", "K211R", "D248N", "A297E", "K366R", "T369A", "E399D", "D432E", "V435I", "V491I", "N519S"], "gp120": ["E74K", "-106Y", "T109A", "N113S", "S116-", "T135A", "K143Q", "V144A", "N157-", "D159K", "N161S", "N201R", "T208I", "M243R", "I255T", "T269I", "T292N", "G293E", "I295T", "K307T", "T308E", "I332T", "T334K", "S336A", "-370S", "-372W", "-373T", "N384E", "T385P", "T387I", "N435T", "T436N", "N437-", "T471G", "P472Q"], "gp41": ["L4I", "T96A", "D113G", "D129N", "D247E", "S251N", "L256F", "Y284F", "N298S", "L330R"], "nef": ["A49T", "H50Y", "I133T", "A151E", "S188G", "L191V"], "p1": ["N9S"], "p17": ["E55A", "K113E"], "p24": ["I27V", "M96L", "R203K"], "p6": ["P5L", "-27K", "Q28-"], "rev": ["A15V", "P30S", "R66G", "P74L"], "tat": ["P3L", "C31V", "R52W", "T76I"], "vif": ["I31V", "K36R", "G37N", "V51I", "T157I"], "vpr": ["R32K", "P85R"], "vpu": ["E5Q", "E58D", "-71N", "-72V", "-73L"]}, "labels": {"aa": "INT: T218I, D256E; RT-p51: P4S, E194K, K211R, D248N, A297E, K366R, T369A, E399D, D432E, V435I; RT-p66: P4S, E194K, K211R, D248N, A297E, K366R, T369A, E399D, D432E, V435I, V491I, N519S; gp120: E74K, -106Y, T109A, N113S, S116-, T135A, K143Q, V144A, N157-, D159K, N161S, N201R, T208I, M243R, I255T, T269I, T292N, G293E, I295T, K307T, T308E, I332T, T334K, S336A, -370S, -372W, -373T, N384E, T385P, T387I, N435T, T436N, N437-, T471G, P472Q; gp41: L4I, T96A, D113G, D129N, D247E, S251N, L256F, Y284F, N298S, L330R; nef: A49T, H50Y, I133T, A151E, S188G, L191V; p1: N9S; p17: E55A, K113E; p24: I27V, M96L, R203K; p6: P5L, -27K, Q28-; rev: A15V, P30S, R66G, P74L; tat: P3L, C31V, R52W, T76I; vif: I31V, K36R, G37N, V51I, T157I; vpr: R32K, P85R; vpu: E5Q, E58D, -71N, -72V, -73L"}}}]}]}, {"name": "results/subtype_trees/CRF56_cpx.nwk", "node_attrs": {"div": 0.15318, "clade_membership": {"value": "CRF56_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G43A", "T94C", "C96A", "A159G", "C200T", "C213T", "G214T", "T303A", "A410T", "A492T", "T531C", "A541G", "T571A", "A689G", "G706A", "A743G", "T767C", "G771T", "T788C", "G791A", "G803A", "G806A", "C830T", "T851C", "T852A", "G866A", "C947T", "A1067G", "C1118T", "G1192A", "T1310C", "T1329A", "C1342G", "T1444C", "C1454-", "G1773A", "A1832G", "G1845A", "C1853T", "T1983A", "G2119A", "G2273A", "A2293G", "T2296C", "C2335T", "C2365T", "T2380A", "C2485T", "T2488C", "G2498A", "T2499G", "A2551G", "G2578A", "G2579A", "C2580G", "A2581T", "C2605T", "C2613A", "G2615C", "A2617T", "G2626T", "G2632C", "C2638T", "T2644C", "A2665G", "G2677A", "G2693A", "T2708C", "G2714C", "A2722G", "C2723T", "T2737A", "A2887G", "A2925G", "A3124G", "A3165C", "T3170G", "C3171G", "A3192G", "T3207C", "G3218A", "G3220A", "G3293A", "A3385G", "G3442A", "G3553A", "T3559A", "A3685G", "T3962C", "G3997A", "A4057G", "A4525G", "A4552G", "T4674C", "G4708A", "G4968A", "A4990T", "A5004T", "A5005C", "G5143A", "G5146A", "T5148A", "C5168T", "C5237T", "A5324G", "A5355C", "G5361A", "G5371T", "C5372A", "G5382T", "G5385A", "G5386A", "G5396A", "C5397T", "C5412T", "A5421G", "C5432A", "G5444A", "T5448A", "T5451C", "C5454T", "A5461G", "A5463G", "T5482C", "G5484T", "C5511T", "A5535T", "G5537A", "C5554T", "A5555C", "C5560A", "C5563A", "G5594A", "G5607A", "T5614C", "A5720G", "T5763C", "C5769A", "A5787T", "T5788A", "T5789C", "T5791G", "C5793G", "T5796A", "C5797-", "T5798-", "T5799-", "A5800T", "G5805C", "G5810T", "-5812G", "T5826C", "A5828T", "A5830G", "A5833G", "T5834A", "T5837G", "A5840T", "A5842G", "A5843G", "A5856G", "G5858A", "T5860C", "-5861T", "-5862C", "-5863A", "A5866T", "T5870C", "G5881A", "C5887T", "C5911T", "G5917A", "C5923T", "C5924T", "A5962G", "T5980C", "T6007C", "A6009G", "A6019G", "C6023A", "T6025A", "T6026C", "G6044C", "C6109T", "G6133A", "T6142A", "T6151C", "T6163C", "-6167A", "-6170G", "-6171T", "-6172T", "-6173A", "C6175T", "C6178T", "-6189C", "C6190T", "C6193T", "-6195G", "-6198C", "-6200G", "-6207T", "-6208A", "-6209A", "-6210T", "-6211G", "-6212G", "-6213T", "-6214A", "-6215C", "-6216T", "-6217G", "G6227-", "A6229T", "A6253T", "G6260C", "T6263A", "A6275G", "A6276T", "A6277G", "C6278A", "T6285A", "G6286A", "G6303C", "A6304C", "T6322A", "A6326G", "-6340C", "A6350G", "A6354G", "T6361C", "C6369T", "T6382C", "A6430T", "A6442G", "G6451A", "T6457C", "G6458A", "A6465C", "G6466T", "G6481A", "C6487T", "A6489G", "G6490A", "C6496T", "C6511T", "T6598C", "T6688C", "A6728G", "A6798G", "G6806A", "C6807G", "A6809C", "G6823A", "C6826T", "-6830C", "-6831C", "-6832A", "T6849C", "A6854G", "A6858G", "T6875G", "G6906C", "-6956A", "-6958T", "-6963A", "-6964T", "-6968T", "-6970G", "A7037T", "A7065G", "G7106A", "A7155C", "T7156A", "C7250T", "T7255A", "C7268A", "T7270A", "A7276G", "G7289C", "G7291A", "A7297G", "T7309G", "C7324G", "A7339G", "G7428A", "A7447T", "T7453G", "A7469C", "C7517G", "C7579T", "A7589G", "C7597T", "C7603T", "T7625C", "A7626T", "T7627A", "G7631C", "A7636T", "C7651T", "C7658G", "A7669G", "A7673G", "C7690T", "A7691C", "T7692A", "T7699C", "A7701C", "T7702C", "G7726A", "A7743T", "G7753A", "G7754A", "C7762T", "G7773A", "C7775T", "A7796T", "T7801C", "A7807G", "T7825C", "T7843C", "T7864C", "A7873G", "A7877T", "A7883G", "A7885G", "T7912A", "G7915A", "T7930C", "A7931C", "C7932T", "A7935C", "A7938G", "A7941C", "A7947G", "A8011C", "A8032G", "-8105A", "-8111G", "-8112G", "-8113G", "T8164C", "T8167C", "T8173C", "G8180A", "A8208G", "A8224T", "A8269G", "A8294C", "C8311A", "G8373-", "T8374-", "G8387A", "C8411T", "C8412G", "C8413A", "T8414A", "A8455C", "A8459G", "G8476C", "G8499C", "G8516A", "A8525G", "G8555A", "A8584T", "T8585C", "G8588A", "C8590G", "C8603T", "T8640C", "G8666A", "C8740T", "C8794A", "C8843T", "G8864A", "C8888A", "G8909A", "T8913C", "A8915G", "T8947A", "A8954G", "G8977A", "C8979A"], "RT-p51": ["V60I", "V135R", "A162S", "T173K", "E174H", "E177D", "A200T", "E207Q", "F214L", "K277R", "K357T", "S359G", "K366R", "V371A", "V375I", "R390K", "A400I"], "RT-p66": ["V60I", "V135R", "A162S", "T173K", "E174H", "E177D", "A200T", "E207Q", "F214L", "K277R", "K357T", "S359G", "K366R", "V371A", "V375I", "R390K", "A400I", "D488E"], "gp120": ["N1S", "A2T", "-3S", "E4N", "N52S", "H57K", "H77Q", "-105N", "N113T", "E125-", "L137I", "K141V", "Q142K", "V144E", "R150S", "N157D", "I166V", "N167S", "A172V", "D202N", "E204T", "K212R", "T292A", "K316R", "A318S", "M319L", "-326P", "T330-", "I332T", "N335S", "L341V", "G351A", "-370N", "-373N", "-374N", "-375N", "-376D", "T385-", "I395L", "Q404R", "E418K", "P472T", "E479Q"], "gp41": ["S42N", "K56Q", "L72V", "T96A", "L118M", "Q119E", "I124V", "I130Q", "N133T", "D148E", "A151K", "L152F", "T165S", "T192S", "I194V", "H211P", "Q213P", "L244I", "L254I", "S270G", "G293S", "N302S", "N331H"], "nef": ["V11-", "P24E", "D38A", "S45T", "A53P", "Y81F", "A83G", "A151E", "K192R", "F202Y"], "p17": ["T53S", "S66P", "K69R", "S124N"], "p2": ["V7A"], "p24": ["S41T", "R154K", "S200T", "A204G"], "p6": ["R31K"], "pro": ["T12A", "G16E", "P39T", "I62K"], "rev": ["D7V", "A8T", "R14Q", "T62D", "A68T", "P72H", "-88G", "-89G", "S106P", "S107P", "G111E"], "tat": ["E2D", "V4I", "S7N", "T19K", "S23N", "K29V", "R53S", "R54H", "Q60P", "R62S", "Q63K", "L74S", "P75S", "T76Q", "T77A", "N80D"], "vif": ["Y30H", "R41K", "V128I", "Y135F", "N140S", "S186N", "R187H", "S188T"], "vpr": ["F15Y", "H45Y", "I84L", "G86R", "G89V", "A93S", "G94N"], "vpu": ["S3P", "K38R", "S62E", "M65A", "G68V", "N79F", "N81D"]}, "labels": {"aa": "RT-p51: V60I, V135R, A162S, T173K, E174H, E177D, A200T, E207Q, F214L, K277R, K357T, S359G, K366R, V371A, V375I, R390K, A400I; RT-p66: V60I, V135R, A162S, T173K, E174H, E177D, A200T, E207Q, F214L, K277R, K357T, S359G, K366R, V371A, V375I, R390K, A400I, D488E; gp120: N1S, A2T, -3S, E4N, N52S, H57K, H77Q, -105N, N113T, E125-, L137I, K141V, Q142K, V144E, R150S, N157D, I166V, N167S, A172V, D202N, E204T, K212R, T292A, K316R, A318S, M319L, -326P, T330-, I332T, N335S, L341V, G351A, -370N, -373N, -374N, -375N, -376D, T385-, I395L, Q404R, E418K, P472T, E479Q; gp41: S42N, K56Q, L72V, T96A, L118M, Q119E, I124V, I130Q, N133T, D148E, A151K, L152F, T165S, T192S, I194V, H211P, Q213P, L244I, L254I, S270G, G293S, N302S, N331H; nef: V11-, P24E, D38A, S45T, A53P, Y81F, A83G, A151E, K192R, F202Y; p17: T53S, S66P, K69R, S124N; p2: V7A; p24: S41T, R154K, S200T, A204G; p6: R31K; pro: T12A, G16E, P39T, I62K; rev: D7V, A8T, R14Q, T62D, A68T, P72H, -88G, -89G, S106P, S107P, G111E; tat: E2D, V4I, S7N, T19K, S23N, K29V, R53S, R54H, Q60P, R62S, Q63K, L74S, P75S, T76Q, T77A, N80D; vif: Y30H, R41K, V128I, Y135F, N140S, S186N, R187H, S188T; vpr: F15Y, H45Y, I84L, G86R, G89V, A93S, G94N; vpu: S3P, K38R, S62E, M65A, G68V, N79F, N81D", "clade": "CRF56_cpx"}}, "children": [{"name": "MZ327290", "node_attrs": {"div": 0.20234000000000002, "accession": "MZ327290", "clade_membership": {"value": "CRF56_cpx"}, "country": {"value": "RU"}, "date": {"value": 2017.0}, "Strain_name": {"value": "RU_ERS_2703_2017"}, "LANL_subtype": {"value": "CRF56_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["-304T", "G354A", "T396C", "G401A", "A428G", "A497G", "A503G", "G518A", "G524A", "T570C", "A647G", "G690-", "C691-", "A692-", "A705C", "G762A", "T763C", "A978G", "A1002G", "T1052C", "T1055C", "G1067A", "T1182C", "G1311T", "A1337C", "A1370G", "T1422C", "-1454C", "A1459C", "G1493A", "C1598T", "C1650T", "A1673G", "C1692A", "T1724G", "G1743A", "G1757A", "A1758G", "A1770G", "T1826A", "G1839A", "C1913A", "T1996C", "T2080C", "T2095C", "A2197G", "C2199T", "C2263T", "A2290G", "G2362A", "A2374G", "C2386T", "G2389A", "A2407G", "A2422G", "G2431T", "G2447A", "A2459G", "A2470G", "G2509A", "A2519G", "G2551A", "A2560C", "T2575C", "A2590G", "T2617C", "T2626C", "G2630A", "C2632T", "A2641G", "G2665A", "G2682A", "G2686A", "C2694T", "G2707A", "C2740T", "T2758C", "C2806T", "T2863C", "A2872G", "G2914A", "A2929G", "T2935C", "A2972G", "T2977A", "G2984C", "C2985A", "C3023T", "A3059T", "G3071A", "A3088G", "A3091G", "G3093A", "A3097G", "A3099G", "G3124A", "G3127A", "A3142G", "A3145G", "A3162G", "C3165T", "G3173A", "A3190G", "G3192A", "T3197C", "A3200G", "A3217G", "A3221G", "C3319T", "T3424C", "T3433C", "C3449A", "C3499G", "C3504A", "T3530C", "T3550C", "T3566C", "A3607C", "C3610T", "A3622G", "A3675G", "G3679A", "A3684G", "A3724G", "G3733A", "A3737G", "A3739G", "C3746T", "A3755G", "G3756C", "C3787A", "A3796G", "G3808A", "A3814G", "C3826T", "T3844C", "A3854G", "T3856C", "C3857T", "A3866G", "G3886A", "A3890T", "T3904C", "C3908A", "C3922T", "C3995A", "C4015T", "G4060A", "G4093A", "A4105G", "C4146G", "T4240C", "G4279A", "T4396C", "C4412T", "C4471T", "C4474A", "C4475A", "A4495G", "A4498C", "G4531A", "C4534T", "T4543C", "G4549A", "G4552A", "A4555G", "G4582A", "T4702G", "C4728A", "T4730C", "G4737A", "G4774A", "A4779G", "G4786A", "G4802A", "G4817A", "G4855A", "G4856A", "A4860G", "C4889T", "C4898T", "C4914T", "T4916C", "G5018A", "G5060A", "A5065G", "G5090A", "C5102T", "G5179A", "T5188A", "A5233G", "T5293A", "G5312A", "C5359T", "G5370A", "G5375A", "G5376A", "C5406T", "G5418A", "A5446T", "A5447C", "C5496A", "T5535C", "C5555T", "G5558A", "T5568C", "C5569A", "A5574G", "G5581A", "A5602G", "T5618C", "A5621T", "A5689G", "G5730C", "C5792A", "A5794G", "C5795A", "A5804C", "C5805A", "G5808T", "G5809C", "G5811T", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819G", "-5820G", "-5821A", "-5822T", "-5823G", "-5824G", "G5839A", "C5860A", "G5893A", "A5918G", "T5929C", "A5957G", "A6008G", "G6009A", "A6020G", "A6045C", "T6085G", "C6115T", "A6131G", "T6160C", "G6170T", "-6177A", "A6179G", "-6180G", "A6192C", "G6200A", "G6211A", "-6218C", "-6219T", "-6220G", "-6221A", "-6222A", "-6223A", "-6224G", "-6225T", "-6226G", "-6227G", "A6232G", "A6248G", "A6251G", "C6260T", "A6261C", "T6287C", "A6302T", "A6322G", "G6326A", "G6329A", "T6331A", "A6333C", "A6335G", "G6336A", "A6339G", "A6349G", "G6379A", "T6454C", "A6532G", "A6605G", "C6613G", "G6640A", "C6641A", "T6652C", "C6673T", "A6682G", "C6692A", "G6693C", "A6714G", "A6716G", "A6723T", "G6732A", "T6733C", "C6752A", "C6758T", "G6774A", "A6775G", "A6776G", "C6777A", "C6797A", "A6801G", "G6819T", "G6820A", "A6844C", "A6847C", "C6849A", "G6854A", "T6859C", "T6860C", "G6871A", "C6919T", "A6937G", "T6952A", "-6957G", "T6961A", "C6966G", "T6967C", "T6968A", "G6970T", "-6972A", "-6973A", "-6975C", "-6976T", "-6977G", "-6978A", "-6979T", "-6980G", "A6986-", "C6993A", "-7005G", "T7009C", "T7037C", "G7076A", "C7077A", "A7108C", "C7124A", "-7164C", "G7181T", "G7315A", "A7348C", "A7419G", "A7420G", "A7426G", "A7492G", "C7510A", "A7522G", "C7561A", "T7604A", "A7620G", "T7642A", "C7655A", "A7700G", "A7711G", "C7742T", "C7747A", "C7755A", "G7759T", "A7772G", "A7782G", "A7818G", "G7871A", "A7880G", "C7921A", "C7936A", "C7937A", "C7984A", "C8005A", "A8029C", "G8030T", "C8033A", "C8062T", "T8092A", "A8105G", "G8212A", "A8222T", "T8223G", "C8251T", "A8288T", "C8342A", "G8356T", "A8364C", "C8366T", "G8368A", "C8369G", "A8370G", "T8371C", "A8372-", "G8375T", "G8377A", "C8382G", "C8383A", "A8386C", "A8387T", "T8390A", "A8402G", "A8414G", "G8421-", "C8422-", "A8423-", "T8425A", "A8426G", "A8429G", "A8432G", "C8440T", "T8450C", "T8451C", "A8453G", "T8456A", "C8471T", "A8474C", "C8477T", "C8490G", "A8491C", "C8499A", "C8500A", "T8501G", "C8531G", "C8543G", "G8554A", "G8558T", "T8582C", "A8652C", "C8661A", "A8666T", "T8687C", "C8688A", "A8696G", "A8699T", "A8708T", "T8741C", "C8747T", "G8753A", "G8762A", "A8774G", "C8784G", "G8786T", "A8795G", "G8796A", "G8798A", "G8804A", "A8824C", "A8829T", "T8831C", "A8834G", "C8846G", "T8847A", "A8851T", "G8868C", "A8869C", "C8873A", "A8874G", "A8879G", "G8886C", "T8887A", "G8893A", "A8894G", "T8903A", "G8905C", "C8906A", "C8907T", "A8916C", "A8918T", "C8923A", "A8924G", "A8950T", "C8951T", "A8952-", "A8953-", "G8954-", "G8955A", "A8965T", "C8966T", "A8967C", "A8970G", "G8971C", "G8974T", "G9005A", "T9012C", "T9017C", "T9018C", "A9023C", "A9026G", "G9027A", "T9028C", "G9030A", "T9040G", "C9068T", "C9073T", "C9075T"], "INT": ["N27D", "I31V", "S39C", "L45I", "L74I", "A124S", "L234I"], "RT-p51": ["T35I", "V118I", "K122E", "I142V", "V179I", "G196E", "T200I", "I293V", "A297Q", "T322S", "V326I", "G333E", "D335G", "K356R", "T357M", "A360T", "R366K", "T369A", "T376A", "K390R"], "RT-p66": ["T35I", "V118I", "K122E", "I142V", "V179I", "G196E", "T200I", "I293V", "A297Q", "T322S", "V326I", "G333E", "D335G", "K356R", "T357M", "A360T", "R366K", "T369A", "T376A", "K390R", "L452I", "T470N", "S491P", "K527R", "K530R", "I548V", "S554A"], "gp120": ["N4D", "K18R", "T22A", "T35A", "S52D", "I56V", "N64P", "K93E", "-106F", "-107N", "-109G", "-112T", "-115T", "-125D", "I126M", "I133V", "E136S", "I137M", "Y145H", "I156M", "D159K", "N160T", "N161D", "N251D", "S263T", "R280T", "Q287R", "Y290F", "G293T", "Q300K", "H302Y", "T308E", "Q315R", "R322I", "-330N", "T332N", "S336P", "-368S", "N369K", "T371S", "-372S", "N373K", "N374T", "N375D", "-377N", "-379G", "A408N", "K418N", "L424I", "N434T", "N437T", "A443S"], "gp41": ["Q39R", "M54L", "S101T", "K106R", "Y108L", "D110Q", "D113E", "T133A", "Q147L", "N160S", "K172R", "V190M", "I193V", "F206L", "T210L", "H212S", "E215G", "L242F", "A243S", "F263L", "I307C", "I329F", "F340L"], "nef": ["W5L", "S8R", "S9K", "I10A", "-11E", "G12-", "P14D", "Q15T", "I20M", "A27E", "V28G", "G29-", "A33V", "Q50A", "P53K", "D63E", "R71K", "K104Q", "Q107K", "E108D", "H116N", "Y120F", "L148V", "E152K", "N161T", "S163C", "I168M", "C169S", "Q170L", "E176P", "D177E", "R178G", "V182Q", "R184K", "S187R", "S188T", "R192H", "I194K", "Y203F", "K204-", "D205N"], "p1": ["P7S"], "p17": ["V7I", "M61I", "F79H", "I104M", "A121-", "S126N"], "p2": ["N11-", "-12T"], "p24": ["V11T", "I83V", "A194S"], "p6": ["P5T", "F15L", "V21I", "R26G", "K31G"], "pro": ["L10I", "R14K"], "rev": ["V7A", "Q14W", "A15T", "I18T", "K20R", "Y28P", "P30K", "R53S", "I55L", "S61L", "C82S"], "tat": ["N24S", "N40K", "P60L", "G61D", "H65N", "V69I"], "vif": ["F39C", "H48N", "V51I", "R63K", "I65V", "R67K", "R90K", "K92E", "H110Y", "K160R"], "vpr": ["H28Q", "V70I", "P85L", "V89I"], "vpu": ["L4S", "E5V", "I28V", "R41S", "E60D", "L61T", "T63E", "M67L", "-70R", "-71M"]}, "labels": {"aa": "INT: N27D, I31V, S39C, L45I, L74I, A124S, L234I; RT-p51: T35I, V118I, K122E, I142V, V179I, G196E, T200I, I293V, A297Q, T322S, V326I, G333E, D335G, K356R, T357M, A360T, R366K, T369A, T376A, K390R; RT-p66: T35I, V118I, K122E, I142V, V179I, G196E, T200I, I293V, A297Q, T322S, V326I, G333E, D335G, K356R, T357M, A360T, R366K, T369A, T376A, K390R, L452I, T470N, S491P, K527R, K530R, I548V, S554A; gp120: N4D, K18R, T22A, T35A, S52D, I56V, N64P, K93E, -106F, -107N, -109G, -112T, -115T, -125D, I126M, I133V, E136S, I137M, Y145H, I156M, D159K, N160T, N161D, N251D, S263T, R280T, Q287R, Y290F, G293T, Q300K, H302Y, T308E, Q315R, R322I, -330N, T332N, S336P, -368S, N369K, T371S, -372S, N373K, N374T, N375D, -377N, -379G, A408N, K418N, L424I, N434T, N437T, A443S; gp41: Q39R, M54L, S101T, K106R, Y108L, D110Q, D113E, T133A, Q147L, N160S, K172R, V190M, I193V, F206L, T210L, H212S, E215G, L242F, A243S, F263L, I307C, I329F, F340L; nef: W5L, S8R, S9K, I10A, -11E, G12-, P14D, Q15T, I20M, A27E, V28G, G29-, A33V, Q50A, P53K, D63E, R71K, K104Q, Q107K, E108D, H116N, Y120F, L148V, E152K, N161T, S163C, I168M, C169S, Q170L, E176P, D177E, R178G, V182Q, R184K, S187R, S188T, R192H, I194K, Y203F, K204-, D205N; p1: P7S; p17: V7I, M61I, F79H, I104M, A121-, S126N; p2: N11-, -12T; p24: V11T, I83V, A194S; p6: P5T, F15L, V21I, R26G, K31G; pro: L10I, R14K; rev: V7A, Q14W, A15T, I18T, K20R, Y28P, P30K, R53S, I55L, S61L, C82S; tat: N24S, N40K, P60L, G61D, H65N, V69I; vif: F39C, H48N, V51I, R63K, I65V, R67K, R90K, K92E, H110Y, K160R; vpr: H28Q, V70I, P85L, V89I; vpu: L4S, E5V, I28V, R41S, E60D, L61T, T63E, M67L, -70R, -71M"}}}, {"name": "CRF56_cpx_NODE_0000001", "node_attrs": {"div": 0.15471000000000001, "clade_membership": {"value": "CRF56_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T695C", "T824C", "C1060A", "G1769A", "T2086C", "T2503C", "C2596T", "T2653C", "T2668A", "G2683A", "G3264A", "A4433C", "G5499A", "G5556A", "G5864A", "G5907A", "-6202T", "-7003T", "C8063A", "A8385C", "A8469C", "C8494A", "G8534A"], "INT": ["I220L"], "gp120": ["A288T", "K307R", "T334A", "-372W"], "gp41": ["A268T"], "nef": ["I43L", "T51N"], "p24": ["T110N"], "rev": ["S86N"], "vpr": ["N91D"]}, "labels": {"aa": "INT: I220L; gp120: A288T, K307R, T334A, -372W; gp41: A268T; nef: I43L, T51N; p24: T110N; rev: S86N; vpr: N91D"}}, "children": [{"name": "JN882655", "node_attrs": {"div": 0.20081000000000002, "accession": "JN882655", "clade_membership": {"value": "CRF56_cpx"}, "country": {"value": "FR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "URF5_patient_A"}, "LANL_subtype": {"value": "CRF56_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["G190T", "C193A", "T201C", "A215-", "A216-", "A217-", "A303C", "T362C", "G401A", "A419G", "A461T", "A474G", "A509G", "G518A", "G541A", "A545G", "A571T", "G592T", "A604T", "G612A", "T635C", "T641C", "A645G", "A706G", "C788T", "G821A", "C851T", "T979C", "A986G", "G1090A", "A1097G", "C1103T", "A1192G", "G1247A", "T1262C", "G1265C", "C1310T", "T1452-", "C1453-", "-1455G", "-1456C", "-1457C", "G1469A", "G1487A", "A1497T", "G1508A", "C1535T", "A1544G", "G1586A", "A1622G", "T1722G", "T1744C", "C1750A", "C1767T", "A1773G", "T1787C", "G1832A", "A1845G", "G1852A", "T1853C", "C1868T", "C1873T", "A1903C", "A1921G", "A1967C", "A1983T", "C1985T", "T1986C", "A1988G", "A2007G", "A2059G", "C2106A", "A2127G", "A2128C", "C2149A", "A2182G", "C2211A", "G2215T", "A2216G", "A2230G", "A2241G", "A2273G", "G2293A", "T2315C", "G2362A", "C2464A", "T2476C", "T2485C", "C2488T", "G2499C", "G2539A", "T2575C", "C2589T", "A2593G", "T2620C", "G2681A", "A2699G", "G2707A", "C2720T", "T2735C", "G2833A", "G2887A", "G2947A", "G3071A", "A3088G", "A3091G", "A3099G", "C3100A", "A3151T", "A3163G", "G3236A", "T3294C", "A3334G", "G3379A", "A3397T", "A3442G", "C3449A", "A3463T", "G3490A", "G3508A", "T3526A", "A3553G", "A3559T", "A3562G", "T3644G", "A3651G", "G3685A", "A3768G", "G3808C", "G3816A", "T3820C", "G3836A", "A3866G", "C3940T", "C3962T", "A3997G", "A4000G", "G4057A", "C4076A", "A4081G", "C4140T", "A4145G", "C4195A", "A4228G", "A4375T", "A4403T", "G4525A", "C4674T", "G4689A", "G4694A", "A4708G", "C4757A", "G4856A", "A4865G", "A4968G", "G4982T", "T4990A", "G5059A", "T5091C", "G5104T", "A5143G", "A5146G", "A5148C", "T5168C", "T5194A", "A5215G", "T5237C", "C5303T", "G5312A", "T5314C", "A5361C", "G5362A", "G5363A", "A5364G", "A5385G", "T5462C", "G5545A", "T5554C", "A5607G", "C5616T", "G5668A", "G5673A", "T5687A", "A5716C", "G5718A", "A5721G", "T5739C", "G5741A", "G5748A", "C5789A", "C5792A", "A5794G", "C5795A", "A5804C", "T5807C", "G5808A", "G5809C", "G5811T", "G5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817C", "-5818A", "-5819T", "-5820G", "-5821G", "-5822T", "-5823G", "-5824G", "G5833T", "A5834C", "A5865C", "C5870T", "A5881G", "G5902A", "A5917G", "T5923C", "T5924C", "T5932C", "A5946G", "C5998A", "C6010T", "A6020G", "A6037G", "C6044A", "G6046T", "A6103T", "T6171C", "A6176G", "-6177T", "-6180C", "C6183G", "A6186T", "C6189G", "-6201T", "-6205G", "A6209G", "T6253C", "A6257C", "C6260A", "A6261C", "A6263G", "G6275A", "T6276G", "C6293T", "T6299A", "C6303A", "G6311A", "C6318A", "G6323A", "A6339G", "A6349G", "A6420T", "T6430C", "G6489A", "A6490C", "T6511C", "C6523T", "A6525G", "G6572A", "T6586C", "C6598T", "C6641T", "C6647T", "G6668A", "G6693A", "A6695T", "G6728A", "C6777A", "A6778C", "A6779C", "A6789C", "C6790A", "G6798A", "A6801G", "A6806G", "G6807C", "T6810G", "A6823G", "T6826C", "C6830A", "C6831A", "C6837A", "A6842G", "T6895C", "-6957A", "A6960C", "A6963G", "A6971-", "A6974-", "A6989G", "-6995G", "-6996A", "-6997T", "-6998A", "-6999G", "-7000G", "-7001A", "-7002A", "C7006-", "A7007-", "C7008-", "T7009-", "A7010-", "A7020C", "G7062A", "A7096C", "G7101A", "G7102A", "A7106G", "A7107C", "T7117C", "T7130C", "C7155A", "A7156T", "A7158G", "-7164A", "A7231G", "G7256A", "C7269G", "A7270G", "G7276A", "A7279G", "G7285A", "C7289G", "A7290G", "A7291G", "G7309T", "C7313A", "G7324C", "T7447A", "G7453T", "C7463A", "C7469A", "A7470G", "C7480T", "G7501A", "G7517C", "T7579C", "A7583C", "A7594C", "T7603C", "T7622A", "C7623A", "C7625T", "T7626A", "A7627T", "A7629C", "C7631G", "G7633C", "T7636A", "T7651C", "G7658C", "G7668A", "G7669A", "G7673A", "T7690C", "C7691A", "A7692T", "C7699T", "A7700T", "C7702T", "A7726G", "T7743A", "A7753G", "A7754G", "A7773G", "T7775C", "G7777A", "A7782C", "C7801T", "A7818G", "G7831A", "C7864T", "G7873A", "A7912T", "A7915G", "C7930T", "C7931A", "T7932C", "C7935A", "G7938A", "C7939T", "C7941A", "G7942A", "A7943C", "G7947A", "C7960A", "C8009A", "C8011A", "G8032A", "C8047T", "T8153C", "A8163G", "C8164T", "A8180G", "T8197G", "G8234A", "C8251T", "A8288G", "T8290C", "A8297G", "C8302T", "A8323T", "A8364C", "G8368T", "C8369A", "A8370G", "A8372G", "G8375-", "A8446G", "C8455A", "G8458A", "T8492G", "T8501A", "T8504C", "A8516G", "G8558A", "T8584A", "A8588G"], "INT": ["E11D", "R14K", "A21T", "I31V", "L101I", "T122I", "T210S"], "RT-p51": ["P4H", "K11S", "T39K", "E40D", "M41V", "K49R", "I60V", "D123E", "R135T", "T165I", "G196R", "I202V", "V326I", "D335G", "V381I", "I400T"], "RT-p66": ["P4H", "K11S", "T39K", "E40D", "M41V", "K49R", "I60V", "D123E", "R135T", "T165I", "G196R", "I202V", "V326I", "D335G", "V381I", "I400T", "L452I", "E488D", "L517V", "N519S", "K558R"], "gp120": ["N4T", "K31R", "I56V", "Q77H", "-106A", "N108-", "T110-", "-112V", "-115I", "T135P", "E136T", "I137V", "V141R", "L147F", "Y149N", "S150N", "V153I", "P155Q", "N158G", "N161S", "Y189F", "R212N", "K224R", "E240K", "P265S", "G272S", "R280H", "I281L", "A292T", "T308N", "K309Q", "N312T", "S318A", "L319R", "P326K", "A328D", "-330E", "-368N", "N369D", "N370S", "N374D", "N375T", "-377R", "-379V", "I386-", "T387-", "Q389P", "L395F", "G403E", "E414D", "R416K", "K418A", "N435S", "V468I", "T472R", "Q479G"], "gp41": ["L4M", "Q56R", "V72L", "T94P", "S107N", "N109T", "M118L", "E119Q", "R122K", "V124I", "Q130I", "T133S", "E148D", "K151A", "F152L", "N160T", "K172R", "M176I", "P211H", "P213Q", "I244L", "Y284H", "N287S", "S293G", "N298K", "V311I", "I329V", "I332V"], "nef": ["S8R", "S9I", "I10V", "Q35R", "A38D", "R39K", "F81Y"], "p17": ["E42D", "N47D", "M61I", "R69K", "W86L", "Q90L", "D93N", "I104V", "N124S"], "p2": ["S10-", "N11A", "-12N"], "p24": ["I83T", "V91I", "S120N", "K154R"], "p6": ["F15V", "V21A", "S23Y", "R26Q", "-27E", "Q28S", "E29R", "P30D"], "p7": ["M1I", "T11S"], "pro": ["A12T", "E16G", "E35D", "T39P", "K62I", "L63S", "I64V", "K70R"], "rev": ["P31S", "E32T", "A54E", "D62T", "P67S", "Q96L", "I102T", "P106S", "E111G", "*117E"], "tat": ["N24K", "V29A", "G57R", "S74L", "S75P", "Q76T", "A77I", "R78N", "D80N", "P84Q"], "vif": ["H30Y", "A35T", "K41R", "I128V", "R132S", "F135Y", "R158K", "R173I", "N186S", "H187R", "T188P"], "vpr": ["Y15S", "Y45H", "V70I", "R86Q", "R87G", "N94D"], "vpu": ["V21I", "F27Y", "K37Q", "R45K", "E60D", "L61K", "T63E", "E66T", "M67L", "V68M", "-69D", "-71M", "-72V", "-73D", "-74F", "-75D", "-76S", "-77W", "D78V", "F79G", "D81N"]}, "labels": {"aa": "INT: E11D, R14K, A21T, I31V, L101I, T122I, T210S; RT-p51: P4H, K11S, T39K, E40D, M41V, K49R, I60V, D123E, R135T, T165I, G196R, I202V, V326I, D335G, V381I, I400T; RT-p66: P4H, K11S, T39K, E40D, M41V, K49R, I60V, D123E, R135T, T165I, G196R, I202V, V326I, D335G, V381I, I400T, L452I, E488D, L517V, N519S, K558R; gp120: N4T, K31R, I56V, Q77H, -106A, N108-, T110-, -112V, -115I, T135P, E136T, I137V, V141R, L147F, Y149N, S150N, V153I, P155Q, N158G, N161S, Y189F, R212N, K224R, E240K, P265S, G272S, R280H, I281L, A292T, T308N, K309Q, N312T, S318A, L319R, P326K, A328D, -330E, -368N, N369D, N370S, N374D, N375T, -377R, -379V, I386-, T387-, Q389P, L395F, G403E, E414D, R416K, K418A, N435S, V468I, T472R, Q479G; gp41: L4M, Q56R, V72L, T94P, S107N, N109T, M118L, E119Q, R122K, V124I, Q130I, T133S, E148D, K151A, F152L, N160T, K172R, M176I, P211H, P213Q, I244L, Y284H, N287S, S293G, N298K, V311I, I329V, I332V; nef: S8R, S9I, I10V, Q35R, A38D, R39K, F81Y; p17: E42D, N47D, M61I, R69K, W86L, Q90L, D93N, I104V, N124S; p2: S10-, N11A, -12N; p24: I83T, V91I, S120N, K154R; p6: F15V, V21A, S23Y, R26Q, -27E, Q28S, E29R, P30D; p7: M1I, T11S; pro: A12T, E16G, E35D, T39P, K62I, L63S, I64V, K70R; rev: P31S, E32T, A54E, D62T, P67S, Q96L, I102T, P106S, E111G, *117E; tat: N24K, V29A, G57R, S74L, S75P, Q76T, A77I, R78N, D80N, P84Q; vif: H30Y, A35T, K41R, I128V, R132S, F135Y, R158K, R173I, N186S, H187R, T188P; vpr: Y15S, Y45H, V70I, R86Q, R87G, N94D; vpu: V21I, F27Y, K37Q, R45K, E60D, L61K, T63E, E66T, M67L, V68M, -69D, -71M, -72V, -73D, -74F, -75D, -76S, -77W, D78V, F79G, D81N"}}}, {"name": "MN736702", "node_attrs": {"div": 0.18105000000000002, "accession": "MN736702", "clade_membership": {"value": "CRF56_cpx"}, "country": {"value": "SI"}, "date": {"value": 2012.0}, "Strain_name": {"value": "Sample37_SI324"}, "LANL_subtype": {"value": "CRF56_cpx"}}, "branch_attrs": {"mutations": {"nuc": ["T372C", "C426T", "A576G", "A578C", "A579T", "T596C", "C603A", "G671A", "A674C", "A676G", "A692T", "T1003A", "T1174C", "G1184A", "A1241G", "A1337G", "G1380T", "G1405C", "G1451T", "-1457T", "G1474A", "A1588G", "A1657G", "G1694A", "T1729C", "G1732A", "G1771A", "C1913A", "G1968A", "T1987C", "G2042A", "T2110C", "A2203C", "A2254G", "G2431A", "T2440C", "G2548A", "A2713G", "T2776C", "A2951G", "C2996T", "T3022C", "A3079G", "A3154G", "C3175T", "A3224C", "C3225A", "T3376C", "A3486G", "A3760G", "G3766A", "C3995A", "C4146A", "C4147T", "G4156A", "C4159T", "A4222G", "T4282A", "C4321T", "A4424G", "A4625G", "A4661G", "A4677G", "A4725G", "G4726C", "A4808C", "C4826T", "T4842G", "A4878C", "T4959A", "C4965G", "G5021A", "A5049G", "A5134G", "A5151C", "A5200G", "T5221G", "T5292G", "T5353C", "T5357C", "A5360G", "A5448C", "A5453T", "T5467A", "A5576C", "A5621C", "A5632G", "G5635A", "T5653A", "T5654G", "G5700A", "G5720C", "G5775A", "G5793A", "-5797C", "-5798T", "-5799T", "T5800G", "G5845A", "T5869C", "C5920T", "A6023G", "A6030G", "T6064C", "C6067A", "T6085A", "-6177G", "-6180A", "A6182G", "C6183A", "A6186C", "-6201G", "-6205A", "G6212C", "C6215T", "G6217C", "-6218C", "-6219T", "-6220G", "-6221A", "-6222T", "-6223A", "-6224T", "-6225G", "-6226A", "A6228-", "T6229-", "A6230-", "T6231-", "A6232-", "A6233-", "G6265A", "A6274G", "A6302G", "T6325A", "C6340A", "G6463T", "A6488C", "T6637G", "C6647G", "C6648A", "A6679C", "A6684G", "T6763C", "A6785G", "C6797G", "G6802T", "A6805T", "T6829C", "A6833G", "C6838A", "C6840A", "A6841C", "A6842-", "A6843-", "A6844-", "T6859A", "T6860G", "A6889G", "T6953-", "G6954-", "G6955-", "A6956T", "-6957T", "-6972A", "-6973T", "-6975A", "-6976C", "-6977A", "-6978A", "-6979T", "-6980A", "-6981G", "-6982C", "-6983A", "-6984C", "-6985T", "A6986G", "A6990G", "T6994A", "-6995A", "-6996A", "-6997C", "-6998C", "-6999A", "-7000C", "-7001A", "-7002C", "-7005A", "C7008T", "T7039A", "A7046T", "G7054A", "G7056A", "T7081C", "C7088A", "G7147T", "A7160G", "-7164G", "G7177A", "A7373C", "A7440T", "A7459T", "C7561A", "T7565A", "T7604G", "C7605A", "A7628G", "T7630G", "G7640A", "T7642C", "C7645T", "C7655A", "C7681A", "G7688A", "A7725T", "C7747A", "C7755A", "A7756G", "G7759C", "A7798T", "A7846G", "T7893C", "C7936A", "C7937G", "C7984A", "A8029G", "C8033A", "T8060A", "A8080C", "T8094C", "G8102A", "G8114T", "A8193G", "A8196G", "C8242T", "T8281G", "A8323G", "G8330A", "C8331G", "-8373A", "-8374C", "A8400T", "T8483C", "T8492A", "T8597C", "A8636T", "A8643G", "T8675C", "C8690T", "T8701A", "T8720C", "A8726T", "A8746T", "A8783G", "T8789A", "C8791A", "G8807A", "T8832C", "A8844G", "A8864C", "C8883T", "G8885A", "T8914G", "A8917G", "A8922C", "C8948T"], "INT": ["L74I", "A124N", "I217V", "R284G"], "RT-p51": ["E36D", "T286A", "T377Q"], "RT-p66": ["E36D", "T286A", "T377Q", "Q464R"], "gp120": ["K57E", "E59G", "N64Q", "N71K", "N105D", "-106T", "-107T", "-109S", "N111G", "I126-", "K127-", "E136Q", "S150A", "D157E", "N158D", "N160K", "S162N", "Y163S", "R164K", "K203N", "N261K", "S263P", "P265E", "K277R", "M311V", "Q315G", "R316N", "N327D", "T329N", "S335R", "S336A", "W367-", "-368F", "D376S", "-377T", "N378D", "-379S", "-381N", "-382H", "-383T", "-384D", "-385I", "M398L", "R401K", "N432S", "T436A", "N437S"], "gp41": ["I24L", "K46M", "Q52H", "M54L", "S88T", "S101D", "Y108L", "N109E", "D110Q", "D113N", "N126K", "D129N", "Q141L", "Q147L", "S157N", "V197A", "T210L", "H212G", "E215G", "C253S", "V264A", "A267T", "V271L", "K297R", "N298S", "F340L", "A343S"], "nef": ["-11T", "I20L", "E98D", "I101V", "Y135F", "D149E", "P150Q", "I168V", "E174D", "L191R", "I194P"], "p1": ["N9S"], "p17": ["F79Y", "T81A", "I82L", "Q90K", "K113N", "K114R"], "p2": ["Q9H"], "p24": ["V91N", "V148A", "A217S", "G225A"], "p6": ["M17T", "G18E", "D32N"], "p7": ["R3K", "K41R"], "pro": ["R57K", "V82I"], "rev": ["I21L", "Y28P", "P30R", "I55L", "S61G", "V71E", "I78L", "C85Y", "G89V"], "tat": ["Y26F", "C31S", "P60S", "N67T"], "vif": ["I31V", "R47A", "S86A", "I98L", "L125I", "Q127E", "T155A", "H183R", "M189L"], "vpr": ["N16T", "I63S", "I83T"], "vpu": ["E5A", "I9V", "V10I", "F16S", "R38T", "E62A", "A65V", "E66D"]}, "labels": {"aa": "INT: L74I, A124N, I217V, R284G; RT-p51: E36D, T286A, T377Q; RT-p66: E36D, T286A, T377Q, Q464R; gp120: K57E, E59G, N64Q, N71K, N105D, -106T, -107T, -109S, N111G, I126-, K127-, E136Q, S150A, D157E, N158D, N160K, S162N, Y163S, R164K, K203N, N261K, S263P, P265E, K277R, M311V, Q315G, R316N, N327D, T329N, S335R, S336A, W367-, -368F, D376S, -377T, N378D, -379S, -381N, -382H, -383T, -384D, -385I, M398L, R401K, N432S, T436A, N437S; gp41: I24L, K46M, Q52H, M54L, S88T, S101D, Y108L, N109E, D110Q, D113N, N126K, D129N, Q141L, Q147L, S157N, V197A, T210L, H212G, E215G, C253S, V264A, A267T, V271L, K297R, N298S, F340L, A343S; nef: -11T, I20L, E98D, I101V, Y135F, D149E, P150Q, I168V, E174D, L191R, I194P; p1: N9S; p17: F79Y, T81A, I82L, Q90K, K113N, K114R; p2: Q9H; p24: V91N, V148A, A217S, G225A; p6: M17T, G18E, D32N; p7: R3K, K41R; pro: R57K, V82I; rev: I21L, Y28P, P30R, I55L, S61G, V71E, I78L, C85Y, G89V; tat: Y26F, C31S, P60S, N67T; vif: I31V, R47A, S86A, I98L, L125I, Q127E, T155A, H183R, M189L; vpr: N16T, I63S, I83T; vpu: E5A, I9V, V10I, F16S, R38T, E62A, A65V, E66D"}}}]}]}]}, {"name": "results/subtype_trees/CRF02_AG.nwk", "node_attrs": {"div": 0.09168, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T227C", "T1752C", "G1766A", "G2656A", "A2727G", "C2839A", "C2909G", "G2914A", "G3019A", "C3223T", "T3253C", "T3550C", "A3682C", "A3769G", "A4105G", "T4153A", "C4162A", "A4178G", "A4182C", "G4186A", "T4216C", "A4306G", "A5062C", "T5415C", "A5709G", "T5827G", "-6209A", "-6222A", "-6225G", "-6226A", "C6318A", "A6581G", "G6638A", "-6689G", "A6691G", "A6712G", "-6958T", "-7001A", "-7002A", "-7003T", "-7005A", "A7040G", "-7164A", "T7622A", "G7633C", "A7846G", "A8323C", "T8414A", "G8424A"], "INT": ["I135V", "Q136T"], "RT-p51": ["K211R", "D248E"], "RT-p66": ["K211R", "D248E", "E529D"], "gp120": ["N5-", "P155Q", "N160S", "M243V", "E262K", "I279V", "-383N", "I396V"], "gp41": ["M54L"], "vif": ["G37D"]}, "labels": {"aa": "INT: I135V, Q136T; RT-p51: K211R, D248E; RT-p66: K211R, D248E, E529D; gp120: N5-, P155Q, N160S, M243V, E262K, I279V, -383N, I396V; gp41: M54L; vif: G37D", "clade": "CRF02_AG"}}, "children": [{"name": "CRF02_AG_NODE_0000001", "node_attrs": {"div": 0.09235, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T571A", "A2210T", "T2476C", "T2668A", "A2728G", "A3217G", "G3643A", "C4501T", "C4665T", "T4670C", "T4678G", "C4679A", "A4717T", "G5059A", "A5248C", "A5305G", "-5824T", "C5974T", "T6187C", "-6201G", "-6202C", "-6203A", "-6205C", "T6331C", "C6563A", "-6998G", "C8293T", "T8505G", "G8506T"], "gp120": ["E204K", "E309D"], "nef": ["C55V"], "p17": ["F79Y"], "vif": ["H27Y", "I31R", "Y44F", "R158K"], "vpr": ["E48N"]}, "labels": {"aa": "gp120: E204K, E309D; nef: C55V; p17: F79Y; vif: H27Y, I31R, Y44F, R158K; vpr: E48N"}}, "children": [{"name": "CRF02_AG_NODE_0000002", "node_attrs": {"div": 0.10024, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C476T", "C513T", "G524A", "A534G", "A541G", "C827T", "G1271T", "T1329A", "G1355A", "G1404A", "G1553A", "T1646C", "A1656C", "C1756A", "C2613T", "A2839C", "A3165G", "G3220A", "G3398A", "G3630A", "C4569T", "A5049G", "G5066A", "G5143A", "C5306T", "G5385A", "G5418A", "T5448G", "T5451C", "G5499A", "A5721G", "-5861A", "C5923T", "G6029A", "G6133A", "-6195T", "-6204G", "-6207A", "-6214A", "-6218G", "A6251G", "T6263C", "A6333G", "G6368A", "T6395A", "C6427T", "G6577T", "A6638G", "G6742A", "C6777G", "A6781T", "A6809G", "C6810G", "C6812A", "C6840A", "-6985A", "T6988C", "G7026A", "G7054A", "G7094A", "G7147T", "C7170T", "T7309A", "A7492G", "C7633A", "A7701G", "T7702G", "G7773A", "A7877G", "A7992G", "G8116A", "A8170G", "T8223C", "G8231A", "G8458A", "T8741C", "T8903C", "A8917C"], "INT": ["A265V"], "RT-p51": ["T173I", "E248D", "K357R"], "RT-p66": ["T173I", "E248D", "K357R", "R512K"], "gp120": ["-124G", "M133V", "N161S", "A172T", "S181T", "E241D", "T319G", "Q320K", "T329K", "N378-", "-379N", "-384D", "R391K", "T439I"], "gp41": ["S107T", "D110E", "S157N", "T192A"], "nef": ["R39K", "K192T"], "p1": ["S9H"], "p17": ["T67A"], "p24": ["S14A", "E180D", "S200T", "G225S"], "rev": ["G90R", "I108V"], "vif": ["T155A", "S186N"], "vpr": ["G94S"], "vpu": ["N81D"]}, "labels": {"aa": "INT: A265V; RT-p51: T173I, E248D, K357R; RT-p66: T173I, E248D, K357R, R512K; gp120: -124G, M133V, N161S, A172T, S181T, E241D, T319G, Q320K, T329K, N378-, -379N, -384D, R391K, T439I; gp41: S107T, D110E, S157N, T192A; nef: R39K, K192T; p1: S9H; p17: T67A; p24: S14A, E180D, S200T, G225S; rev: G90R, I108V; vif: T155A, S186N; vpr: G94S; vpu: N81D"}}, "children": [{"name": "MT222937", "node_attrs": {"div": 0.14327, "accession": "MT222937", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2015.0}, "Strain_name": {"value": "DE00215CM060"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G43A", "G50A", "G51A", "G52A", "C96T", "A132T", "C155T", "C200-", "A203T", "A204C", "A224G", "C227A", "A286G", "A356G", "G361C", "G386A", "A410T", "A418G", "A425G", "C456T", "A492T", "T506C", "T531A", "A579C", "G608A", "A654G", "G667A", "A730T", "G770A", "A774C", "G785A", "C823G", "G829A", "C845T", "T852A", "G866A", "T979C", "A980G", "C1013T", "C1060A", "A1070C", "A1073G", "A1089G", "G1184A", "G1192A", "A1202C", "C1211A", "T1244C", "G1247A", "T1310C", "A1412G", "-1452C", "A1496G", "C1535T", "G1568A", "T1676C", "A1691G", "T1729G", "C1745T", "-1746T", "-1747C", "-1748C", "C1751T", "T1754G", "C1755A", "A1758C", "C1782T", "A1804G", "T1986C", "T1999C", "A2002G", "G2008A", "C2044T", "T2086C", "A2131G", "C2149G", "A2164G", "A2203C", "C2211T", "T2237A", "G2273A", "C2281T", "T2449C", "A2470G", "G2578A", "G2632A", "A2698G", "G2710A", "A2713G", "T2735C", "A2767G", "T2770C", "A2836G", "A2937G", "C2944T", "G2947A", "C2960T", "A2969G", "A2975C", "A3151G", "G3188A", "G3209A", "G3211A", "G3221T", "C3225T", "A3226G", "C3232T", "A3233G", "C3253T", "A3258G", "A3268C", "C3318T", "C3322T", "G3340A", "G3442A", "G3448A", "A3454G", "G3463A", 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"A6065G", "G6076T", "T6085A", "T6148C", "A6159C", "T6163-", "A6168-", "A6176-", "C6183G", "A6188G", "-6189C", "C6193T", "T6196C", "-6198C", "T6199C", "-6200A", "-6208C", "-6210C", "-6211C", "-6212A", "-6213C", "-6215T", "-6216T", "-6217C", "-6219G", "-6220T", "-6221A", "-6223A", "G6227A", "A6230T", "A6233C", "G6253A", "A6268G", "C6278A", "A6283G", "T6285A", "C6305G", "T6306A", "C6317G", "G6323A", "A6326G", "A6327T", "G6329A", "A6338C", "-6340G", "C6397T", "A6442G", "G6490A", "A6500G", "C6523T", "T6536A", "T6551C", "C6559T", "T6564C", "G6583A", "C6591T", "T6592A", "T6598A", "A6602T", "A6605G", "C6619T", "G6626A", "T6637G", "G6640T", "A6654C", "C6660T", "G6693A", "T6772C", "G6774C", "A6790T", "C6797G", "A6799C", "A6805G", "G6820A", "C6826T", "T6849G", "C6855G", "T6856G", "T6860C", "C6861A", "T6895C", "T6932A", "G6935A", "G6936A", "A6944T", "A6947G", "C6949T", "C6951A", "-6956A", "-6957C", "-6963G", "-6964C", "-6968T", "-6969G", "-6970G", "-6972A", "C6991T", "C6993T", "-6994C", "-6995T", 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"A8904G", "C8906A", "T8923G", "A8924T", "C8937T", "C8978A", "A8980T", "T8993C", "T9019G", "C9073T", "C9078T", "C9093T", "G9136A", "G9137A"], "INT": ["I31V", "K34R", "I72V", "I101L", "D167E", "K173R"], "RT-p51": ["E36D", "T39L", "S48T", "V60I", "F214L", "K281R", "I292V", "T294P", "V365I", "V372I", "A376S", "T377M", "I380V", "K388R", "A408V", "V435I"], "RT-p66": ["E36D", "T39L", "S48T", "V60I", "F214L", "K281R", "I292V", "T294P", "V365I", "V372I", "A376S", "T377M", "I380V", "K388R", "A408V", "V435I", "R461K", "H483L", "L484I"], "gp120": ["-3K", "E4G", "-5M", "L6-", "D19E", "E21K", "E59K", "N71D", "E74D", "H77Q", "N102T", "-105T", "-106L", "-107T", "N108L", "-109I", "N111-", "N113-", "E125K", "I126L", "K127Q", "Q142K", "V144E", "L151D", "Q155E", "N158V", "S162Q", "T216A", "S228T", "L237T", "S246L", "N248K", "T250S", "N251D", "V258I", "N261K", "K262D", "N267T", "T269I", "N272S", "R280H", "K307T", "T308R", "Q315D", "N327-", "-328N", "I332S", "T334R", "S336H", "S360T", "G361K", "-368K", "T371-", "T380I", "-381S", "-382A", "L388I", "K393R", "N397R", "E414I", "N420S", "N432D", "N433H", "N434G", "T436E", "N437I", "L466V", "V468I", "E481G"], "gp41": ["V7A", "K56R", "T94P", "N109H", "N133G", "T165S", "I173M", "I177V", "R221G", "D230S", "F263L", "A268T", "T270A", "L273H", "W279R", "K283N", "I307T", "A310I", "W314G", "R334T"], "nef": ["P24Q", "P25A", "A26P", "T28S", "A33V", "D38A", "S46R", "A53N", "V55I", "F85L", "K104R", "L110I", "H116N", "I133T", "A151T", "E155K", "R188G", "I194S", "H199Y"], "p17": ["S9T", "K28R", "T53S", "S66T", "K69R", "I82L", "I107V", "S111N", "Y132F"], "p2": ["S10P"], "p24": ["M15L", "A31G", "S33N", "S41T", "V83T", "T110N", "E113D", "S120G", "R154K"], "p6": ["M17R", "-26K", "K27Q", "K42R"], "pro": ["L63P"], "rev": ["D7V", "A8D", "R14G", "K39R", "R48K", "A54E", "P70S", "I78L", "C82S", "S86N", "D88G", "V97E", "P100T", "I102L"], "tat": ["S7R", "S23N", "N24T", "K29V", "R53S", "Q60R", "D64N", "K71E", "P84Q"], "vif": ["T20A", "D37N", "F39V", "K50R", "D61E", "V65I", "R67K", "H83N", "R90K", "K92G", "R93K", "H110R", "R132K", "T157R", "K158E", "T159I", "K160I", "K176E"], "vpr": ["Q3R", "N48D", "E58I", "L67M"], "vpu": ["V10T", "I28V", "R41K", "R47I", "-69Y", "D78-", "N79-", "D80-"]}, "labels": {"aa": "INT: I31V, K34R, I72V, I101L, D167E, K173R; RT-p51: E36D, T39L, S48T, V60I, F214L, K281R, I292V, T294P, V365I, V372I, A376S, T377M, I380V, K388R, A408V, V435I; RT-p66: E36D, T39L, S48T, V60I, F214L, K281R, I292V, T294P, V365I, V372I, A376S, T377M, I380V, K388R, A408V, V435I, R461K, H483L, L484I; gp120: -3K, E4G, -5M, L6-, D19E, E21K, E59K, N71D, E74D, H77Q, N102T, -105T, -106L, -107T, N108L, -109I, N111-, N113-, E125K, I126L, K127Q, Q142K, V144E, L151D, Q155E, N158V, S162Q, T216A, S228T, L237T, S246L, N248K, T250S, N251D, V258I, N261K, K262D, N267T, T269I, N272S, R280H, K307T, T308R, Q315D, N327-, -328N, I332S, T334R, S336H, S360T, G361K, -368K, T371-, T380I, -381S, -382A, L388I, K393R, N397R, E414I, N420S, N432D, N433H, N434G, T436E, N437I, L466V, V468I, E481G; gp41: V7A, K56R, T94P, N109H, N133G, T165S, I173M, I177V, R221G, D230S, F263L, A268T, T270A, L273H, W279R, K283N, I307T, A310I, W314G, R334T; nef: P24Q, P25A, A26P, T28S, A33V, D38A, S46R, A53N, V55I, F85L, K104R, L110I, H116N, I133T, A151T, E155K, R188G, I194S, H199Y; p17: S9T, K28R, T53S, S66T, K69R, I82L, I107V, S111N, Y132F; p2: S10P; p24: M15L, A31G, S33N, S41T, V83T, T110N, E113D, S120G, R154K; p6: M17R, -26K, K27Q, K42R; pro: L63P; rev: D7V, A8D, R14G, K39R, R48K, A54E, P70S, I78L, C82S, S86N, D88G, V97E, P100T, I102L; tat: S7R, S23N, N24T, K29V, R53S, Q60R, D64N, K71E, P84Q; vif: T20A, D37N, F39V, K50R, D61E, V65I, R67K, H83N, R90K, K92G, R93K, H110R, R132K, T157R, K158E, T159I, K160I, K176E; vpr: Q3R, N48D, E58I, L67M; vpu: V10T, I28V, R41K, R47I, -69Y, D78-, N79-, D80-"}}}, {"name": "KP411845", "node_attrs": {"div": 0.17269, "accession": "KP411845", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "SE"}, "date": {"value": 2011.0}, "Strain_name": {"value": "SE602024"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G346T", "A347C", "G350A", "T351A", "C352A", "T355G", "A360C", "T362A", "G363-", "G364-", "G365-", "A369G", "A412G", "G413C", "C435T", "A497G", "A512G", "G518A", "A540G", "A554G", "T596C", "A599G", "A604G", "C614T", "A645G", "A656G", "G687A", "G690A", "A699G", "C731T", "G776A", "T777A", "G791A", "G803A", "A818G", "G822T", "A899G", "C902T", "A941G", "A978G", "C1040T", "A1115C", "G1134A", "A1145G", "C1169T", "A1188G", "C1243T", "A1256G", "G1265A", "G1268A", "T1421C", "T1444C", "-1452T", "G1469A", "G1472A", "A1529G", "T1547C", "A1580G", "A1595G", "T1616C", "A1673G", "G1737C", "C1744T", "C1752T", "A1770G", "G1771A", "T1783C", "A1784G", "A1828T", "G1845A", "C1853G", "A1926G", "A2007G", "T2017C", "A2056G", "A2063C", "T2071C", "T2083C", "A2125T", "C2149T", "T2210G", "A2297G", "A2329G", "C2335T", "C2353T", "G2362A", "C2464T", "T2488C", "G2530A", "G2548A", "A2569G", "A2590G", 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"C9091-", "T9092-", "C9093-", "T9094-", "T9095-", "G9096-", "C9097-", "T9098-", "C9102A", "C9103G", "A9104C"], "INT": ["S24N", "S119T", "A124S", "I208L", "T218I", "N222Q"], "RT-p51": ["T39A", "S68G", "E177G", "A272P", "K277R", "L279M", "R307K", "V375I", "T377Q", "V435R"], "RT-p66": ["T39A", "S68G", "E177G", "A272P", "K277R", "L279M", "R307K", "V375I", "T377Q", "V435R", "V466I", "T470D", "E471G", "H483Y", "E514D", "L517I", "S534A"], "gp120": ["-3N", "E4-", "-5K", "K18R", "I56M", "H57N", "L58I", "E59T", "T104S", "-105N", "-106I", "-107K", "N108K", "-109D", "-110V", "-112S", "-114I", "-115S", "-116C", "-117G", "-118K", "-119R", "-120L", "-121T", "-122E", "-123H", "V133A", "T135A", "E136D", "K141Q", "K143E", "A146S", "R150K", "V153I", "Q155P", "N157Q", "N159H", "S162I", "Y163F", "N167I", "A191T", "F195Y", "T216S", "Q259H", "K262E", "P263T", "N272G", "V279I", "T292A", "D297N", "Q300K", "V305I", "T308G", "N312K", "K316R", "K323E", "-326P", "T330I", "I332M", "N335S", "S347I", "N349S", 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"A243P", "L244I", "A245V", "D247E", "S251N", "V264T", "L277S", "S290A", "L296I", "N302S", "T306A", "I307A", "A310T", "A312G", "G322L", "L330C", "A343S"], "nef": ["I10T", "P14S", "Q15R", "V16I", "I20L", "Q22R", "S45T", "A49R", "A50S", "D54A", "H89F", "E108D", "Y120F", "N157I", "S163A", "C169G", "D175V", "E179D", "F185S", "F191Y", "I194V", "L198Q", "F202Q"], "p17": ["R4I", "S6K", "V7G", "S9R", "G11-", "K12E", "K26S", "M61I", "K69G", "Q90R", "I104V", "I107M", "A118T", "A119T", "T122A"], "p2": ["V7A"], "p24": ["M15I", "S16T", "A31S", "E128D", "V135I", "I153V", "T171I"], "p6": ["E19-", "I21Q", "T22I", "S23I", "P25S", "-26Q", "R31E", "L35P", "*50L"], "p7": ["M1I"], "pro": ["L10F", "G16E", "L19V", "K43R", "K70R", "M89L"], "rev": ["G6R", "A8V", "E11D", "Y28L", "P30T", "T34S", "Q51E", "I55L", "S61T", "T62D", "S67P", "C82H", "T91A", "V108G", "T114N"], "tat": ["E2D", "S16N", "Q17D", "P18-", "T19-", "T20-", "A21-", "Y26V", "K29R", "C31S", "N40K", "R52Q", "G57R", "T58S", "L74F", "P75T", "T76H", "N80I", "K85E"], "vif": ["K33G", "K36R", "F39C", "R41K", "S46C", "H48N", "V51A", "V66I", "H73Q", "R93T", "H110Y", "V128I", "R132I", "N140S", "V154I", "T157V", "K179R", "R181K"], "vpr": ["G41E", "H45Q", "E58G", "R85P", "A93S"], "vpu": ["A8S", "F16A", "F27L", "R34Q", "D58E", "E60D", "L61T", "E66-", "M67-", "G68-", "-70E", "-71M", "-72G", "-73Y", "-74D", "-75N", "-76I", "-77L", "L82M"]}, "labels": {"aa": "INT: S24N, S119T, A124S, I208L, T218I, N222Q; RT-p51: T39A, S68G, E177G, A272P, K277R, L279M, R307K, V375I, T377Q, V435R; RT-p66: T39A, S68G, E177G, A272P, K277R, L279M, R307K, V375I, T377Q, V435R, V466I, T470D, E471G, H483Y, E514D, L517I, S534A; gp120: -3N, E4-, -5K, K18R, I56M, H57N, L58I, E59T, T104S, -105N, -106I, -107K, N108K, -109D, -110V, -112S, -114I, -115S, -116C, -117G, -118K, -119R, -120L, -121T, -122E, -123H, V133A, T135A, E136D, K141Q, K143E, A146S, R150K, V153I, Q155P, N157Q, N159H, S162I, Y163F, N167I, A191T, F195Y, T216S, Q259H, K262E, P263T, N272G, V279I, T292A, D297N, Q300K, V305I, T308G, N312K, K316R, K323E, -326P, T330I, I332M, N335S, S347I, N349S, -368D, N369G, -370T, T371A, -372Q, -373S, -381D, -382D, N383D, T387L, Q389P, C390R, K393N, Q394I, V396I, W399R, Q400R, Q404L, A405S, M406I, Y407S, I411R, Q412R, E414T, I415R, E418T, N420I, G423V, R428G, D429G, G431S, N432T, N433T, N435T, T436N, N437D, E438D, F440L, R441P, P442A, G445E, D446K, R448N, D449Y, N450C, W451R, S453-, L455Q, K457I, K462I, E464A, P465A, G467V, V468A, T471P, H472P, A473S, K474S, E479L, E481K; gp41: V2A, G3V, L4V, G5V, F8V, L9F, G10V, F11V, G13R, T18S, G20I, A22S, I24M, T25M, L26M, Q29D, R31Y, L33C, S42Y, K46Y, I48N, A50V, T58S, V59F, V69F, A71S, K77R, G89S, T96N, P98S, Y108Q, W112L, D113G, K122R, S125N, D129E, I130E, N133R, I135T, E137Q, N140I, D153G, K154E, N166H, V187I, A189T, T210Y, H211P, E215D, E220G, G225E, D230G, D232E, S239N, A243P, L244I, A245V, D247E, S251N, V264T, L277S, S290A, L296I, N302S, T306A, I307A, A310T, A312G, G322L, L330C, A343S; nef: I10T, P14S, Q15R, V16I, I20L, Q22R, S45T, A49R, A50S, D54A, H89F, E108D, Y120F, N157I, S163A, C169G, D175V, E179D, F185S, F191Y, I194V, L198Q, F202Q; p17: R4I, S6K, V7G, S9R, G11-, K12E, K26S, M61I, K69G, Q90R, I104V, I107M, A118T, A119T, T122A; p2: V7A; p24: M15I, S16T, A31S, E128D, V135I, I153V, T171I; p6: E19-, I21Q, T22I, S23I, P25S, -26Q, R31E, L35P, *50L; p7: M1I; pro: L10F, G16E, L19V, K43R, K70R, M89L; rev: G6R, A8V, E11D, Y28L, P30T, T34S, Q51E, I55L, S61T, T62D, S67P, C82H, T91A, V108G, T114N; tat: E2D, S16N, Q17D, P18-, T19-, T20-, A21-, Y26V, K29R, C31S, N40K, R52Q, G57R, T58S, L74F, P75T, T76H, N80I, K85E; vif: K33G, K36R, F39C, R41K, S46C, H48N, V51A, V66I, H73Q, R93T, H110Y, V128I, R132I, N140S, V154I, T157V, K179R, R181K; vpr: G41E, H45Q, E58G, R85P, A93S; vpu: A8S, F16A, F27L, R34Q, D58E, E60D, L61T, E66-, M67-, G68-, -70E, -71M, -72G, -73Y, -74D, -75N, -76I, -77L, L82M"}}}]}, {"name": "CRF02_AG_NODE_0000003", "node_attrs": {"div": 0.09454, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T506C", "A2131G", "G2428A", "G3094A", "A4976C", "A5094G", "C5186A", "A5621C", "G5784A", "T5992C", "-6164A", "-6166T", "-6169C", "-6172C", "-6173A", "-6175C", "-6198A", "C6278A", "T6306A", "G6490A", "G6583A", "G6634A", "A6799C", "A6805G", "-6830A", "-6831A", "-6832G", "-6833A", "-6834A", "-6835T", "A6836G", "-6978A", "-6984C", "A7158G", "T7630A", "C8415G", "C8425A", "A8540G", "C8590G", "T8595G"], "RT-p51": ["T39S"], "RT-p66": ["T39S"], "gp120": ["N64D", "-115S", "-116S", "-122E", "Q142K", "V144E", "L237T", "-326K", "N435S"], "nef": ["A83G", "F85V"], "p6": ["S24P"], "vif": ["R130S", "T170A"], "vpr": ["H28N"], "vpu": ["-69Y", "-70D", "-71N"]}, "labels": {"aa": "RT-p51: T39S; RT-p66: T39S; gp120: N64D, -115S, -116S, -122E, Q142K, V144E, L237T, -326K, N435S; nef: A83G, F85V; p6: S24P; vif: R130S, T170A; vpr: H28N; vpu: -69Y, -70D, -71N"}}, "children": [{"name": "AY371141", "node_attrs": {"div": 0.13047999999999998, "accession": "AY371141", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CM_4082STN"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T362C", "A389G", "A398G", "G407A", "A431G", "G495A", "G519A", "A521C", "A530G", "T531C", "A543G", "A557G", "C558G", "A579T", "T602C", "C614A", "G629A", "A647G", "C688A", "G771A", "C772G", "G785A", "G806A", "C827T", "T852A", "A978G", "T1004C", "G1022A", "A1101G", "C1136A", "A1157G", "G1184A", "T1262C", "G1271T", "T1329A", "C1342G", "G1388A", "T1444C", "C1453-", "C1454-", "-1455G", "-1456C", "-1457C", "T1559C", "T1574C", "G1640A", "G1727A", "T1741C", "-1746T", "-1747C", "-1748C", "T1749C", "C1751T", "C1753T", "T1754G", "C1755A", "C1756A", "A1758C", "C1775A", "A1861G", "A1891T", "T1986C", "T2071C", "A2113G", "C2199A", "A2203T", "A2212C", "C2263T", "G2273A", "C2281T", "T2380A", "C2386T", "T2393C", "A2446G", "C2452T", "T2458C", "A2563C", "C2584T", "T2607A", "A2617C", 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"-6980G", "-6981A", "-6982A", "-6983A", "-6985C", "C6991T", "A6992T", "-6994A", "-6995G", "-6996A", "-6997A", "G6998A", "-6999A", "-7000T", "C7006A", "T7045C", "C7068G", "A7090G", "G7094A", "A7148G", "T7150A", "A7161C", "G7166C", "C7250A", "A7296G", "G7441A", "A7523G", "A7532C", "A7589G", "C7597T", "C7603T", "C7623A", "A7629C", "G7657A", "T7666A", "A7676G", "A7689G", "T7702A", "T7751C", "G7773A", "T7801G", "C7805T", "T7843C", "A7856C", "C7874T", "C7878A", "G7918A", "T7929A", "T7930C", "A7931C", "C7932A", "A7943G", "A7953G", "A7962G", "A7972C", "G7977A", "A8002G", "C8009A", "A8032T", "T8047C", "T8113C", "T8115C", "G8133A", "T8159G", "T8209C", "T8210C", "C8213T", "T8292G", "C8296T", "G8304C", "T8321C", "C8323A", "T8348G", "A8370T", "A8385C", "G8418C", "C8440T", "A8455G", "A8469G", "T8480A", "T8492C", "G8505A", "A8657G", "A8662T", "G8666A", "G8678A", "C8688A", "T8701A"], "INT": ["K71R", "I72V", "K111Q", "T122I", "N134D", "V135I", "T136K"], "RT-p51": ["T35K", "E36D", "V60I", "F171Y", "K174N", "I178M", "P243H", "V326I", "K366R", "T369A", "V371A", "K395R", "M403T", "V435A"], "RT-p66": ["T35K", "E36D", "V60I", "F171Y", "K174N", "I178M", "P243H", "V326I", "K366R", "T369A", "V371A", "K395R", "M403T", "V435A", "V458I", "R461K", "H483Y", "E514D", "D529E"], "gp120": ["-3K", "E4D", "N52S", "I56M", "H57P", "E78V", "S87G", "K93R", "N102H", "N108-", "-112F", "-114R", "-117D", "-118D", "-119M", "-120R", "-121E", "E125-", "M133I", "L151Q", "N157D", "N158S", "N159E", "S160V", "N161G", "S162Q", "E183Q", "N201R", "K204S", "P210S", "V243A", "N248S", "N261V", "N267D", "T269I", "V279M", "A288T", "D297N", "H302Y", "S306N", "D309A", "N311T", "Q315R", "K316Q", "H324Y", "-328E", "I332V", "T366S", "-368D", "N369S", "-370N", "T371-", "-373S", "-374T", "-375E", "-376E", "-377T", "-379N", "T380S", "-381E", "-382N", "-384E", "A405G", "E414I", "N432E", "E438Q", "L466I", "E481G"], "gp41": ["R74G", "K77Q", "T96A", "S107N", "N109T", "D121E", "S125G", "D129G", "N133K", "S157N", "N166K", "L191F", "T192N", "L209H", "T210H", "R214G", "D217G", "E220G", "E223D", "G225E", "V271A", "W286G", "L304F", "L330R", "R334T", "F340L"], "nef": ["I10L", "Q22R", "T23Q", "P24T", "A27K", "T28G", "G29-", "A33V", "D38G", "I43V", "S46R", "V55I", "Q107L", "H116N"], "p1": ["S9N"], "p17": ["A54T", "E62N", "S66P", "T70A", "L75V", "I82L", "D93E", "I104M", "A118E"], "p2": ["V7A", "S10-", "N11A", "-12N"], "p24": ["S41T", "I124V", "E180D", "S200T", "A204G"], "p6": ["I21T", "P25L", "-26K", "K27Q", "D32E"], "pro": ["L63P"], "rev": ["V16I", "I21V", "Y28P", "E32G", "I52V", "A54E", "T62S", "S67P", "C89R", "V104G"], "tat": ["P3L", "S7N", "N24T", "R62H", "N67S", "L74T", "P75T", "T82A", "K85E"], "vif": ["K33R", "S46C", "R47K", "V51A", "V66I", "H73N", "V85F", "R90K", "R93K", "Q105H", "R132K", "K141Q", "T157R", "K176E", "S188P"], "vpr": ["Q3R", "F15S", "N48D", "Q66H"], "vpu": ["S3P", "E5A", "F16G", "F27L", "-72I", "-73L", "-74Y", "-75N", "D78-", "N79-"]}, "labels": {"aa": "INT: K71R, I72V, K111Q, T122I, N134D, V135I, T136K; RT-p51: T35K, E36D, V60I, F171Y, K174N, I178M, P243H, V326I, K366R, T369A, V371A, K395R, M403T, V435A; RT-p66: T35K, E36D, V60I, F171Y, K174N, I178M, P243H, V326I, K366R, T369A, V371A, K395R, M403T, V435A, V458I, R461K, H483Y, E514D, D529E; gp120: -3K, E4D, N52S, I56M, H57P, E78V, S87G, K93R, N102H, N108-, -112F, -114R, -117D, -118D, -119M, -120R, -121E, E125-, M133I, L151Q, N157D, N158S, N159E, S160V, N161G, S162Q, E183Q, N201R, K204S, P210S, V243A, N248S, N261V, N267D, T269I, V279M, A288T, D297N, H302Y, S306N, D309A, N311T, Q315R, K316Q, H324Y, -328E, I332V, T366S, -368D, N369S, -370N, T371-, -373S, -374T, -375E, -376E, -377T, -379N, T380S, -381E, -382N, -384E, A405G, E414I, N432E, E438Q, L466I, E481G; gp41: R74G, K77Q, T96A, S107N, N109T, D121E, S125G, D129G, N133K, S157N, N166K, L191F, T192N, L209H, T210H, R214G, D217G, E220G, E223D, G225E, V271A, W286G, L304F, L330R, R334T, F340L; nef: I10L, Q22R, T23Q, P24T, A27K, T28G, G29-, A33V, D38G, I43V, S46R, V55I, Q107L, H116N; p1: S9N; p17: A54T, E62N, S66P, T70A, L75V, I82L, D93E, I104M, A118E; p2: V7A, S10-, N11A, -12N; p24: S41T, I124V, E180D, S200T, A204G; p6: I21T, P25L, -26K, K27Q, D32E; pro: L63P; rev: V16I, I21V, Y28P, E32G, I52V, A54E, T62S, S67P, C89R, V104G; tat: P3L, S7N, N24T, R62H, N67S, L74T, P75T, T82A, K85E; vif: K33R, S46C, R47K, V51A, V66I, H73N, V85F, R90K, R93K, Q105H, R132K, K141Q, T157R, K176E, S188P; vpr: Q3R, F15S, N48D, Q66H; vpu: S3P, E5A, F16G, F27L, -72I, -73L, -74Y, -75N, D78-, N79-"}}}, {"name": "CRF02_AG_NODE_0000004", "node_attrs": {"div": 0.10221, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T596C", "G1394A", "G1553A", "G1562A", "A1770G", "G1845A", "C1853T", "A2007G", "C2057A", "G2727A", "G3169A", "G3756A", "G3808C", "G3846A", "A4696G", "G5128A", "T5206C", "C5237T", "G5246A", "C5559T", "T5568C", "A5613C", "A5843T", "T6148C", "-6177A", "-6200A", "-6216C", "-6217T", "-6218G", "-6219A", "-6221A", "-6223A", "T6263A", "T6325G", "T6328A", "A6339C", "G6368A", "A6489C", "T6536A", "C6607T", "A6668G", "T6772C", "A6788G", "A6821G", "A6837C", "T6838C", "A6854G", "T6860C", "C6861A", "G6935A", "G6936A", "-6968T", "-6980T", "-6982G", "-6985T", "A6990G", "-6994T", "-6997G", "C7008A", "T7095A", "A7160G", "T7270G", "C7313A", "G7322T", "A7470G", "A7622T", "A7628G", "A7641G", "C7678T", "C7936T", "C7999G", "A8011C", "C8251T", "A8402G", "C8412G", "C8413A", "T8480C", "C8491A", "C8906G", "G8977A", "T8993C", "G9005A"], "INT": ["E11D", "S24N"], "RT-p51": ["R211K"], "RT-p66": ["R211K", "S554N"], "gp120": ["-5K"], "gp41": ["K56R", "N109E", "D113G", "D232E"], "nef": ["Q15K", "I20M", "P24E", "P25E"], "p2": ["I13-"], "p6": ["R31G"], "pro": ["G16E", "K70R"], "rev": ["A15V", "I18T", "P30S", "Q51E", "I55L"], "tat": ["T76I"], "vif": ["D37G", "R181K"], "vpr": ["H45Y"], "vpu": ["N79I"]}, "labels": {"aa": "INT: E11D, S24N; RT-p51: R211K; RT-p66: R211K, S554N; gp120: -5K; gp41: K56R, N109E, D113G, D232E; nef: Q15K, I20M, P24E, P25E; p2: I13-; p6: R31G; pro: G16E, K70R; rev: A15V, I18T, P30S, Q51E, I55L; tat: T76I; vif: D37G, R181K; vpr: H45Y; vpu: N79I"}}, "children": [{"name": "GU201499", "node_attrs": {"div": 0.13191999999999998, "accession": "GU201499", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_0126MA"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "A388G", "A399C", "C467T", "A503G", "C558A", "A579T", "A645G", "G650A", "A654G", "T655C", "A675C", "A730T", "C772T", "A914T", "A941G", "T983C", "G998A", "C1061A", "G1265A", "G1404A", "G1430A", "T1439C", "T1444C", "-1452A", "A1461G", "C1490T", "A1496G", "G1568A", "G1586A", "A1657G", "T1682C", "T1724C", "T1741C", "C1756T", "C1767T", "C1782T", "A1907G", "A2012G", "T2053A", "T2080C", "T2087C", "G2173A", "A2203G", "G2229A", "C2464G", "C2584T", "A2615G", "G2632A", "A2641G", "G2683A", "G2821A", "G2878A", "C2944T", "T2968A", "A2975C", "T3002C", "G3015A", "C3023T", "G3071A", "C3100T", "A3103G", "T3262C", "A3279G", "A3280G", "A3292G", "G3307A", "T3412C", "T3505G", "A3507G", "T3544C", "C3589T", "C3668T", "A3768G", "A4069C", "G4145A", "C4146G", "G4294A", "G4366A", "T4537C", "G4581A", "G4622A", "A4650C", "T4665C", "G4678T", "A4684G", "G4694A", "T4717A", "A4740T", "A4760C", "C4820T", "G4856A", "C4871T", "T4883G", "C4914T", "G4968A", "A5045G", "A5049G", "C5056A", "A5059G", "T5091C", "G5146A", "A5247C", "T5281C", "G5305A", "G5308A", "A5345G", "C5406A", "C5412A", "G5437C", "T5462A", "G5484A", "C5611A", "G5620T", "C5664A", "A5689T", "G5699A", "G5709A", "A5717G", "G5775A", "T5796G", "A5833T", "-5869A", "C5911T", "C5949G", "A5962G", "C6023A", "A6030G", "A6044G", "G6076A", "A6157G", "A6158G", "T6160G", "T6163C", "-6165C", "-6167G", "A6168T", "-6170A", "-6171A", "-6174G", "-6178T", "-6179A", "-6180A", "C6183G", "T6184C", "-6189G", "-6195A", "T6199C", "-6204G", "-6207G", "-6208C", "-6210T", "-6211G", "-6212T", "-6213C", "-6214T", "-6215C", "-6220C", "T6252G", "G6253C", "G6267T", "A6273G", "A6282G", "T6285A", "C6305A", "A6306G", "C6317G", "T6322G", "G6329A", "G6336A", "-6340T", "A6367G", "T6373C", "C6511T", "A6525G", "A6553G", "T6564C", "A6573G", "G6577C", "T6579C", "C6601A", "A6635G", "T6658C", "A6682C", "G6712A", "A6728T", "A6753G", "G6767A", "G6774A", "A6781C", "C6807T", "G6823A", "G6836T", "A6842G", "C6859A", "G6894C", "-6956A", "-6957T", "A6962G", "-6963G", "-6964C", "-6969G", "-6970G", "-6972T", "-6973T", "-6974A", "-6975A", "-6976T", "-6977G", "-6979C", "-6981G", "-6983A", "A6989G", "C6993A", "-6995G", "-6996A", "-6999A", "-7000T", "A7001G", "G7004A", "C7006T", "T7009A", "G7040A", "A7089G", "G7106C", "A7108T", "C7114T", "A7123T", "A7161C", "A7162T", "A7163G", "A7164C", "T7165A", "G7168A", "G7181A", "G7182C", "T7192C", "G7225A", "C7264A", "C7266A", "C7268A", "C7429A", "A7439C", "C7590A", "A7594G", "G7631T", "G7657A", "A7673G", "G7688A", "A7689G", "A7701G", "A7743T", "C7747T", "A7782G", "C7792T", "A7796T", "T7801A", "A7818G", "T7930C", "A7931C", "C8005T", "G8019A", "T8092C", "T8122C", "A8196G", "A8221C", "A8228G", "A8264C", "A8288G", "T8321C", "C8323A", "G8329A", "C8416G", "G8490A", "T8492A", "C8510T", "T8645C", "T8701A", "A8746T", "G8798A", "G8805A", "G8822A", "T8835C", "G8871C", "A8874G", "G8893A", "A8894G", "G8905A", "A8922G", "G8929A", "T8947A", "C8979T", "A8980G", "T9018G", "T9060A"], "INT": ["A124S", "R269K", "G283S"], "RT-p51": ["G45E", "D123E", "K174E", "D291E", "T294P", "R307K", "V326I", "K395R"], "RT-p66": ["G45E", "D123E", "K174E", "D291E", "T294P", "R307K", "V326I", "K395R", "E471G", "K558R"], "gp120": ["K18R", "A32G", "H57N", "E59G", "N102E", "T104Y", "-105N", "-106Y", "-107T", "-109S", "-110N", "-112S", "-114S", "-117M", "-118S", "-119P", "-120D", "-121M", "-124G", "M133S", "L137I", "R138I", "K140R", "K143R", "L151S", "Q155E", "I156M", "N157E", "N158K", "S160N", "S162T", "A172T", "K212T", "K224R", "S228T", "E240G", "E241D", "I242T", "N261D", "N272G", "R276S", "T292S", "D294A", "Q300R", "V305I", "N312E", "Q315H", "A318V", "K323E", "-328S", "T330A", "T334A", "N335K", "S336H", "S347T", "G361K", "-368I", "-370G", "-377S", "-379W", "T380I", "-381N", "-382D", "N383T", "-384W", "V396I", "Q412R", "E418H", "T436A", "N437A", "G443T", "T471N", "H472K"], "gp41": ["L4M", "V7F", "S42R", "K46Q", "T96N", "D110Y", "I124V", "D129S", "N133S", "Q147L", "N160S", "T165S", "N166K", "K172R", "T210P", "S239N", "N298S", "I309V", "I321L", "I329V", "F340L"], "nef": ["E25G", "T28K", "A50K", "I133T", "Y135F", "E155K", "D177H", "R178G", "R184K", "R188K", "I194V", "R196Q", "F202Y"], "p17": ["K18R", "L75I", "I82L", "I104V", "I107A", "K114Q", "T115N", "Y132F"], "p2": ["V7A", "Q8T", "Q9N", "S10V", "N11-"], "p24": ["S14V", "V83I", "G225S"], "p6": ["I21T", "P25L", "P30S"], "pro": ["N37D", "I72V"], "rev": ["Y28P", "R53C", "C82R", "S92P"], "tat": ["N12K", "A21P", "L74S"], "vif": ["N22H", "Y27H", "R31I", "K33R", "F44Y", "S52C", "D99E", "H110Y", "V128I", "T155A", "T157K", "K158R", "R187H"], "vpr": ["N48T"], "vpu": ["Q2N", "E5S", "I28L", "R31K", "K37R", "-72F", "-73L"]}, "labels": {"aa": "INT: A124S, R269K, G283S; RT-p51: G45E, D123E, K174E, D291E, T294P, R307K, V326I, K395R; RT-p66: G45E, D123E, K174E, D291E, T294P, R307K, V326I, K395R, E471G, K558R; gp120: K18R, A32G, H57N, E59G, N102E, T104Y, -105N, -106Y, -107T, -109S, -110N, -112S, -114S, -117M, -118S, -119P, -120D, -121M, -124G, M133S, L137I, R138I, K140R, K143R, L151S, Q155E, I156M, N157E, N158K, S160N, S162T, A172T, K212T, K224R, S228T, E240G, E241D, I242T, N261D, N272G, R276S, T292S, D294A, Q300R, V305I, N312E, Q315H, A318V, K323E, -328S, T330A, T334A, N335K, S336H, S347T, G361K, -368I, -370G, -377S, -379W, T380I, -381N, -382D, N383T, -384W, V396I, Q412R, E418H, T436A, N437A, G443T, T471N, H472K; gp41: L4M, V7F, S42R, K46Q, T96N, D110Y, I124V, D129S, N133S, Q147L, N160S, T165S, N166K, K172R, T210P, S239N, N298S, I309V, I321L, I329V, F340L; nef: E25G, T28K, A50K, I133T, Y135F, E155K, D177H, R178G, R184K, R188K, I194V, R196Q, F202Y; p17: K18R, L75I, I82L, I104V, I107A, K114Q, T115N, Y132F; p2: V7A, Q8T, Q9N, S10V, N11-; p24: S14V, V83I, G225S; p6: I21T, P25L, P30S; pro: N37D, I72V; rev: Y28P, R53C, C82R, S92P; tat: N12K, A21P, L74S; vif: N22H, Y27H, R31I, K33R, F44Y, S52C, D99E, H110Y, V128I, T155A, T157K, K158R, R187H; vpr: N48T; vpu: Q2N, E5S, I28L, R31K, K37R, -72F, -73L"}}}, {"name": "GU201500", "node_attrs": {"div": 0.13874, "accession": "GU201500", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_0186BA"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "T362C", "G407A", "A417C", "C435T", "C513T", "A530G", "A534G", "A541G", "T641C", "A644G", "A656G", "A699G", "G771T", "T852A", "T885C", "T944C", "T979C", "T1003A", "A1089G", "A1241G", "A1292C", "T1296C", "T1334C", "T1335C", "T1344C", "A1412G", "-1452T", "A1459G", "T1462C", "G1567A", "G1589A", "T1613C", "T1646C", "A1656C", "G1661A", "T1679C", "C1714T", "T1724G", "G1839A", "C1873T", "A1903C", "T1954C", "G1981A", "A1990G", "G2008A", "T2053C", "A2154G", "A2203C", "T2206C", "C2211T", "G2215A", "A2241G", "A2284T", "C2326T", "G2362A", "A2461G", "T2521C", "G2530A", "A2616G", "A2629G", "C2638T", "G2712A", "A2715G", "A2734G", "A2755G", "T2779G", "A2788G", "G2869A", "A2881G", "C2885T", "A2925G", "T2935C", "G2947A", "C2953T", "A3136G", "A3154G", "A3193G", "G3264A", "A3385G", "G3398A", "T3445C", "A3478G", "A3529G", "G3569C", "A3643G", "T3644A", "G3664A", "A3795G", "G3816A", "G4063A", "C4428T", "G4459A", "A4522G", "A4552T", "A4677C", "A4679C", "G4685A", "A4722T", "G4726A", "C4728A", "A4733C", "T4738C", "C4757T", "G4838A", "G4855A", "A4861G", "C4902T", "T4957C", "A4980C", "G4981A", "G4995A", "G5018A", "G5036A", "A5048G", "A5065G", "A5069G", "A5112G", "G5140A", "A5167G", "A5215G", "T5327C", "C5384T", "G5385A", "C5406T", "G5418A", "T5448A", "G5537A", "C5563G", "A5567G", "A5575G", "T5614C", "C5621G", "A5622G", "T5687A", "G5700A", "G5708A", "T5731C", 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"T8374G", "A8378G", "G8387A", "C8411T", "C8416A", "A8425T", "A8441C", "A8455C", "T8456C", "T8483C", "G8487A", "C8488A", "T8495C", "A8531C", "G8570A", "T8646C", "A8653G", "A8655C", "G8666C", "G8717T", "C8740T", "G8762A", "A8784G", "G8799A", "G8804A", "G8852A", "G8861A", "A8869C", "A8870T", "C8873T", "G8875A", "G8905T", "A8917G", "A8924G", "C8948T", "A8969G", "C8979A", "A9023C", "C9078T"], "INT": ["K7R", "R14K", "T218I"], "RT-p51": ["K20R", "E36D", "S39L", "K49R", "K174R", "I178M", "R206K", "E207G", "K277R", "R390K", "V435I"], "RT-p66": ["K20R", "E36D", "S39L", "K49R", "K174R", "I178M", "R206K", "E207G", "K277R", "R390K", "V435I", "E492Q", "L517I"], "gp120": ["-3N", "E4-", "T9A"], "gp41": ["L4I", "V7L", "I24M", "Q66R", "K106R", "Y108F", "N133A", "D163S", "A189T", "D217G", "A245V", "A267V", "A268T", "T270I", "R276Q", "L277R", "A281V", "A325V", "A328G", "A343S"], "nef": ["S9I", "I10R", "V11-", "T28I", "D38A", "A49K", "A50D", "E63D", "Y102H", "K104R", "K105Q", "E108D", "Y120F", "Q125H", 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N133A, D163S, A189T, D217G, A245V, A267V, A268T, T270I, R276Q, L277R, A281V, A325V, A328G, A343S; nef: S9I, I10R, V11-, T28I, D38A, A49K, A50D, E63D, Y102H, K104R, K105Q, E108D, Y120F, Q125H, M148V, V153I, M173I, E176A, R178K, R188M, K192R, I194M; p1: S9H; p17: V7I, K28Q, T67A, K69R, I107M, T122A; p2: N11S, -12T; p24: S41T, V83T, I91N, S120G, E187D; p6: A12V, F15L; p7: R34K; pro: R14K, E35D, I64M; rev: A8T, T18A, E51A, R53S, A68T, S86N, Q95T, I102V; tat: P3L, N24K, K29I, R54H, Q63E, D64G, N67D, T82A; vif: S46C, R47K, H48N, V51A, R90K, K92R, I124T, R132Q, A137T, K160R, K176E, G185E; vpr: Q3R, G94S; vpu: Q2H, S3P, E5G, F27Y, R34K, G68D, Y69M, D70E, N71M, -72G, -73N, -74D, -75N, -76I, -77L, D78L, D80N"}}}]}]}]}, {"name": "CRF02_AG_NODE_0000005", "node_attrs": {"div": 0.0955, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A205G", "G206T", "G5086A", "-6221A", "-6223A", "A6790C", "A7533G", "T8292G", "T8321C", "C8849T", "C8978A"], "gp41": ["S107T", "L330R", "F340L"], "vif": ["R167K"]}, "labels": {"aa": "gp41: S107T, L330R, F340L; vif: R167K"}}, "children": [{"name": "CRF02_AG_NODE_0000006", "node_attrs": {"div": 0.09717, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "C1453-", "-1456C", "-1457C", "G3071A", "C5384T", "T5687A", "G5729A", "-5824T", "-6167G", "C6193T", "-6211A", "-6218G", "-6834A", "-6999C", "T7153G", "A7162G", "T7801C"], "RT-p51": ["V326I"], "RT-p66": ["V326I"], "gp120": ["-105D", "Q315R", "T436E"], "nef": ["K192R"], "p2": ["S10-"], "p6": ["F15L"], "rev": ["I108S"], "tat": ["P3L", "K29V"], "vpu": ["F27Y", "R41K"]}, "labels": {"aa": "RT-p51: V326I; RT-p66: V326I; gp120: -105D, Q315R, T436E; nef: K192R; p2: S10-; p6: F15L; rev: I108S; tat: P3L, K29V; vpu: F27Y, R41K"}}, "children": [{"name": "CRF02_AG_NODE_0000007", "node_attrs": {"div": 0.10497000000000001, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A417C", "C467T", "G785A", "G866A", "A978G", "T1329A", "C1598T", "A1697G", "T1749C", "G1839A", "C1960T", "G1972A", "G2248A", "T2380C", "A2459G", "G2632A", "C2749T", "A2937G", "G3664A", "G3718A", "T4769G", "C4914T", "C5186A", "T5206C", "A5215G", "G5359C", "A5461G", "T5568C", "G5620C", "G5784A", "A5842T", "G5845A", "A6044G", "T6134C", "-6171T", "-6173A", "-6179A", "T6181C", "A6186G", "T6187C", "-6195G", "-6198C", "-6207A", "-6210T", "-6220A", "A6251G", "G6329A", "C6482A", "A6638G", "A6647G", "G6669A", "G6693A", "A6798G", "A6818G", "-6957A", "-6969G", "-6970G", "-6974A", "-6975C", "-6976T", "T6988C", "-6994A", "-6995G", "G7033A", "G7072A", "C7088G", "A7089C", "T7095A", "A7120T", "C7127T", "C7328T", "G7533A", "C7603T", "A7796T", "C7926T", "A7962G", "C8009A", "G8055A", "T8092A", "T8171G", "G8387A", "A8414G", "G8558A", "A8564G", "A8643G", "T8947A", "G8977A", "A8978C", "C8979A", "C9068T"], "RT-p51": ["K122E", "K281R"], "RT-p66": ["K122E", "K281R"], "gp120": ["N111S", "-114S", "-115T", "M133V", "P210T", "K262E", "R280H", "-374T", "-375W", "M406I", "Q412A"], "gp41": ["L9F", "T165S", "T208I", "E220G", "S251N", "F263L", "S290A"], "nef": ["I101V", "F202Y"], "p1": ["S9N"], "p17": ["K28Q"], "p24": ["S200T"], "pro": ["R14K"], "rev": ["I18T", "A54E", "C82S"], "tat": ["P73S", "K85E"], "vif": ["D61E", "H110Y"], "vpr": ["H28N", "R85P"], "vpu": ["E5Q", "D80N"]}, "labels": {"aa": "RT-p51: K122E, K281R; RT-p66: K122E, K281R; gp120: N111S, -114S, -115T, M133V, P210T, K262E, R280H, -374T, -375W, M406I, Q412A; gp41: L9F, T165S, T208I, E220G, S251N, F263L, S290A; nef: I101V, F202Y; p1: S9N; p17: K28Q; p24: S200T; pro: R14K; rev: I18T, A54E, C82S; tat: P73S, K85E; vif: D61E, H110Y; vpr: H28N, R85P; vpu: E5Q, D80N"}}, "children": [{"name": "KY953198", "node_attrs": {"div": 0.14963, "accession": "KY953198", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "NG"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DE00211NG010"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": 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"C6023T", "G6028A", "T6046A", "A6087C", "C6101T", "A6112G", "A6158G", "-6164G", "-6165C", "-6166T", "G6167A", "A6168G", "-6169C", "-6170T", "-6172C", "-6174A", "-6175C", "-6177G", "-6178A", "-6180G", "-6189G", "T6199C", "-6205C", "-6208T", "-6212A", "-6213T", "-6214A", "-6215T", "-6216C", "-6217A", "-6219C", "G6225T", "C6256T", "A6261G", "A6262G", "T6263A", "G6274A", "C6305G", "C6317A", "A6326G", "G6336A", "-6340T", "G6346A", "T6361C", "C6364T", "A6442G", "A6456G", "T6457G", "G6466T", "C6483A", "C6487T", "C6559T", "C6563T", "A6565G", "G6572A", "T6582C", "A6595G", "G6611A", "C6612T", "C6618A", "A6635G", "A6636T", "A6648G", "C6660G", "C6717T", "A6776G", "G6779A", "A6781G", "A6785G", "A6788G", "T6793C", "C6797A", "C6810T", "G6819C", "G6820A", "C6824A", "-6830G", "-6835G", "C6840A", "T6849A", "C6850T", "A6858G", "T6860C", "C6862A", "T6863G", "A6891T", "G6894C", "G6905A", "C6925T", "A6926G", "G6935A", "G6936A", "A6937C", "-6956G", "-6963T", "-6964C", "-6968A", "-6972G", "-6973C", "-6977T", "-6978G", "-6979G", "-6980G", "-6981A", "-6982C", "-6983A", "-6984A", "-6985G", "A6987G", "C6991T", "-6996A", "-6997G", "-6998T", "-7000A", "T7015A", "G7026A", "A7036G", "C7114T", "C7124T", "A7148G", "A7152T", "G7153A", "A7154-", "A7155-", "T7156-", "A7160G", "A7164C", "C7170T", "A7186G", "A7249C", "G7256A", "C7264T", "C7267T", "A7290G", "A7459G", "G7534A", "A7572G", "G7640A", "A7660G", "T7675C", "A7691C", "A7711G", "C7747A", "G7759A", "G7765A", "T7774C", "C7775T", "A7800G", "T7825C", "T7852G", "A7873G", "A7877G", "T7912C", "G7918A", "A7953G", "G7977A", "C7984A", "A8032G", "C8051A", "A8069T", "G8093C", "T8155C", "C8156T", "A8170G", "C8172T", "G8180A", "A8188G", "T8197G", "T8205C", "G8212A", "A8222G", "A8254G", "A8269G", "G8274C", "A8303G", "G8304T", "C8311T", "C8323T", "A8338G", "C8366T", "A8385G", "A8397C", "A8399G", "A8402G", "A8409G", "C8412A", "C8413G", "C8425T", "T8495A", "A8503C", "T8504C", "G8528A", "A8531G", "T8600C", "A8604G", "C8607T", "A8608T", "A8647G", "C8648G", "G8666T", "T8701A", "C8723T", "G8738A", "C8740T", "G8762A", "A8777G", "A8792C", "C8843T", "G8852A", "G8864A", "A8879T", "G8905A", "T8913C", "T8915C", "A8917G", "C8921T", "A8922G", "C8928A", "A8970G", "G8971A", "T8993C", "T9109C", "A9128G", "C9133T"], "INT": ["S119P", "D256E", "I268L", "K273Q", "D278G"], "RT-p51": ["A98G", "K102R", "K103N", "V135M", "T173L", "E177D", "M184V", "F214L", "A272P", "D291A", "A376S", "A400T", "M403T", "E413D", "D432E", "V435M"], "RT-p66": ["A98G", "K102R", "K103N", "V135M", "T173L", "E177D", "M184V", "F214L", "A272P", "D291A", "A376S", "A400T", "M403T", "E413D", "D432E", "V435M", "H483L", "A502G", "R512K", "V531I"], "gp120": ["-5N", "K18R", "T35P", "H57Y", "N64E", "E78A", "N102D", "T104A", "D105S", "-106F", "-107N", "N108R", "-109S", "-110T", "-112S", "E136G", "L137I", "L151V", "Q155K", "N157D", "N158D", "S160N", "N161T", "S162Q", "N201R", "E204N", "T210K", "E240K", "V243A", "A253I", "T255N", "N261V", "K265G", "T269S", "A288V", "K307R", "T308A", "E309K", "N311D", "N312D", "T319I", "R322A", "H324N", "-326E", "T329K", "I332N", "N335S", "S336P", "S337A", "H346L", "S347T", "G351R", "N358D", "G361N", "-368D", "-370I", "-372R", "-373S", "-376D", "-377K", "N378S", "-379N", "-381E", "-382S", "-384D", "R391K", "N432D", "N433I", "N435-", "N437T", "T439I", "V468I", "E479G"], "gp41": ["K90R", "D113N", "I130L", "D148E", "N166S", "T192A", "D217G", "G225E", "S256C", "V264L", "A290V", "G293S", "N298K", "I301T", "I307V", "R324T", "R334V"], "nef": ["Q15E", "I20M", "T23A", "P24R", "T28I", "D54A", "S88G", "H89F", "Y102W", "E108D", "E179D", "R188N", "F191L", "I194V"], "p17": ["A15K", "R30K", "E52D", "L60I", "T67A", "K69G", "F79Y", "R91K", "Q108K", "K114M", "T115-"], "p2": ["N11A", "-12N", "I13V"], "p24": ["S14A", "M15I", "S41T", "V83A", "A217S"], "p6": ["S14I", "T22A", "S24P", "P49Q"], "p7": ["R34K"], "pro": ["L10V", "I15V", "L19P", "Q61N", "L63S"], "rev": ["A8V", "E11D", "R14K", "T62A", "A68E", "Q74L", "S82T", "S103L", "S108G", "G111E", "T114A", "*117E"], "tat": ["Q17K", "S23N", "T58P", "P59S", "T82A"], "vif": ["E2D", "M8V", "H27Y", "I31R", "K33R", "V51I", "V65I", "R67K", "Q91L", "K92R", "D113N", "E117D", "Q127E", "K141Q", "R158Q", "S186N", "S188P"], "vpr": ["F15S", "T19A", "P37Q", "H40Q", "E48D", "L68M", "V70I", "F72Y", "G94S"], "vpu": ["F16A", "I17L", "R47K", "E48D", "E56D", "L61I", "S62-", "T63-", "L64-", "M65-", "E66-", "M67-", "G68-", "-72G", "-73Y", "-74D", "-75N", "-76I", "-77L", "N79W"]}, "labels": {"aa": "INT: S119P, D256E, I268L, K273Q, D278G; RT-p51: A98G, K102R, K103N, V135M, T173L, E177D, M184V, F214L, A272P, D291A, A376S, A400T, M403T, E413D, D432E, V435M; RT-p66: A98G, K102R, K103N, V135M, T173L, E177D, M184V, F214L, A272P, D291A, A376S, A400T, M403T, E413D, D432E, V435M, H483L, A502G, R512K, V531I; gp120: -5N, K18R, T35P, H57Y, N64E, E78A, N102D, T104A, D105S, -106F, -107N, N108R, -109S, -110T, -112S, E136G, L137I, L151V, Q155K, N157D, N158D, S160N, N161T, S162Q, N201R, E204N, T210K, E240K, V243A, A253I, T255N, N261V, K265G, T269S, A288V, K307R, T308A, E309K, N311D, N312D, T319I, R322A, H324N, -326E, T329K, I332N, N335S, S336P, S337A, H346L, S347T, G351R, N358D, G361N, -368D, -370I, -372R, -373S, -376D, -377K, N378S, -379N, -381E, -382S, -384D, R391K, N432D, N433I, N435-, N437T, T439I, V468I, E479G; gp41: K90R, D113N, I130L, D148E, N166S, T192A, D217G, G225E, S256C, V264L, A290V, G293S, N298K, I301T, I307V, R324T, R334V; nef: Q15E, I20M, T23A, P24R, T28I, D54A, S88G, H89F, Y102W, E108D, E179D, R188N, F191L, I194V; p17: A15K, R30K, E52D, L60I, T67A, K69G, F79Y, R91K, Q108K, K114M, T115-; p2: N11A, -12N, I13V; p24: S14A, M15I, S41T, V83A, A217S; p6: S14I, T22A, S24P, P49Q; p7: R34K; pro: L10V, I15V, L19P, Q61N, L63S; rev: A8V, E11D, R14K, T62A, A68E, Q74L, S82T, S103L, S108G, G111E, T114A, *117E; tat: Q17K, S23N, T58P, P59S, T82A; vif: E2D, M8V, H27Y, I31R, K33R, V51I, V65I, R67K, Q91L, K92R, D113N, E117D, Q127E, K141Q, R158Q, S186N, S188P; vpr: F15S, T19A, P37Q, H40Q, E48D, L68M, V70I, F72Y, G94S; vpu: F16A, I17L, R47K, E48D, E56D, L61I, S62-, T63-, L64-, M65-, E66-, M67-, G68-, -72G, -73Y, -74D, -75N, -76I, -77L, N79W"}}}, {"name": "JN248585", "node_attrs": {"div": 0.14912, "accession": "JN248585", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "NG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09NG_SC24"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "T377G", "A378T", "C379T", "C393A", "A450C", "A474G", "G518A", "T525C", "A527C", "T567C", "C583T", "G612A", "A645C", "A653G", "A654G", "A660G", "A661C", "G667A", "A674C", "A678G", "G683A", "G738C", "T763C", "C765T", "G771A", "C772A", "T782C", "G791A", "A809T", "G821A", "A938G", "A986C", "T992G", "G998A", "G1016A", "C1211T", "A1278G", "A1279G", "A1337G", "A1359T", "A1370G", "C1406A", "A1445C", "-1452C", "-1453C", "-1455A", "C1456A", "C1457T", "A1458-", "A1459-", "C1460-", "G1474A", "C1478T", "G1487A", "C1498G", "-1503A", "-1504T", "-1505A", "G1508A", "G1568A", "A1601G", "G1619A", "G1664A", "A1694G", "G1720C", "C1721A", "T1722G", "T1724G", "C1752T", "A1758C", "A1781G", "C1782A", "T1783C", "G1845A", "C1873T", "A1894T", "A1990G", "A2038C", "C2105T", "T2116A", "A2154G", "A2203T", "A2210G", "C2386T", "G2389A", "A2422G", "G2509A", "G2518A", "G2539A", "T2597C", "G2602A", "T2608C", "A2616G", "G2626A", "C2671T", "C2694A", "A2788G", "A2839C", "A2846T", "A2914G", "A2969G", "T3034A", "A3059G", "C3067T", "G3085A", "A3109T", "C3140T", "G3168A", "A3192G", "T3223C", "A3279G", "A3382G", "A3388G", "G3442A", "T3466C", "A3520G", "A3529G", "T3652C", "A3665G", "G3667A", "G3674A", "C3688A", "A3703G", "T3721C", "A3727G", "G3766A", "G3859A", "C3892T", "G3907A", "C3922A", "T3943C", "G4105A", "G4109A", "G4178A", "G4264A", "T4276G", "G4352A", "T4396C", "C4569T", "A4677G", "A4693G", "A4696C", "G4727A", "A4781G", "A4790G", "T4805G", "G4838A", "C4841T", "A4847T", "G4855A", "A4862G", "A4877G", "C4889A", "C4911T", "T4932G", "G4963A", "A4976C", "G4981A", "A4993C", "C5034T", "G5036A", "A5049G", "C5056A", "C5062G", "A5065G", "G5090A", "A5112G", "G5140A", "G5146A", "T5203C", "A5268C", "G5276T", "A5277T", "A5290G", "T5293C", "A5305G", "G5382T", "C5406T", "T5436C", "T5451C", "C5454T", "A5463T", "G5484A", "G5534A", "A5535G", "G5558A", "C5559T", "A5574G", "A5602C", "G5607A", "T5614G", "A5631C", "G5644A", "C5664T", "G5673A", "C5679A", "G5709A", "A5717G", "A5721G", "A5728C", "G5730A", "C5734A", "A5800G", "T5847C", "-5861G", "-5862G", "-5863A", "A5866T", "A5867-", "A5868-", "G5907A", "C5924T", "A5947G", "A5957G", "T5964C", "T6046C", "G6055A", "G6076A", "C6143T", "-6164C", "-6165A", "-6166G", "-6169T", "-6170A", "-6172T", "-6174G", "-6175T", "-6177A", "-6178C", "-6180A", "C6183G", "-6189A", "-6200C", "-6201A", "-6202T", "-6203A", "-6204G", "-6205G", "-6208C", "-6212T", "-6213C", "-6214T", "-6215A", "-6216T", "-6217T", "-6219A", "A6222T", "A6223G", "G6224A", "A6229G", "G6260A", "A6261T", "A6262C", "A6275C", "G6280A", "G6284A", "T6287C", "T6298C", "G6311T", "G6314C", "A6318C", "G6323A", "A6327G", "T6337C", "A6338C", "-6340G", "G6345T", "A6352T", "A6388T", "G6392A", "A6430T", "T6472C", "A6476T", "A6489G", "G6490T", "A6578G", "G6583A", "A6584C", "A6599T", "C6619T", "G6634T", "G6640A", "C6641T", "T6643G", "T6655C", "C6660T", "-6697G", "A6703-", "G6712A", "T6719C", "T6766C", "G6771C", "G6774A", "C6790G", "A6791G", "A6801G", "A6821G", "C6826T", "-6833A", "-6835C", "T6838A", "A6841C", "C6855A", "T6863A", "G6871A", "T6875G", "A6889G", "C6949T", "C6951A", "-6956C", "A6962G", "-6963A", "-6964T", "-6968T", "A6971T", "-6972A", "-6973T", "A6989G", "-6996C", "-6997A", "-6998A", "C6999A", "-7000C", "A7002G", "T7003C", "G7004A", "A7005G", "C7016A", "T7045C", "C7078T", "C7087T", "G7094A", "A7100G", "G7101A", "G7106A", "C7134T", "A7144G", "A7152C", "A7158C", "A7160C", "A7163T", "T7165C", "C7171T", "G7177A", "G7182T", "T7192G", "G7198A", "C7268T", "C7313A", "G7322T", "G7341C", "T7357C", "T7406A", "T7462G", "A7470G", "G7477A", "T7588C", "T7604A", "C7633A", "A7672G", "G7688A", "A7689G", "A7705C", "G7712C", "G7720A", "G7726A", "G7790A", "C7869T", "G7871A", "A7880G", "A7935C", "C7959T", "A7998G", "A8084G", "G8107A", "T8164C", "G8194A", "A8196C", "A8208G", "T8223C", "C8251T", "G8255A", "A8273G", "G8279-", "G8280-", "T8281-", "A8282-", "G8283-", "A8284-", "G8285-", "C8286-", "T8287-", "C8300A", "C8301G", "T8302A", "A8306-", "G8307-", "A8308-", "A8309-", "T8310-", "C8311-", "A8312-", "G8313-", "A8314-", "C8315-", "A8316-", "G8317-", "G8318-", "G8319-", "C8320-", "C8321-", "T8322-", "C8323-", "G8324-", "A8325-", "A8326-", "A8327-", "G8328-", "G8329-", "G8330-", "C8331-", "T8332-", "T8333-", "T8334-", "G8335-", "C8336-", "T8337-", "A8338-", "C8412G", "C8413A", "C8425A", "T8450C", "C8491G", "T8492G", "C8494A", "G8499C", "A8525G", "G8534A", "G8537A", "G8555A", "G8561A", "T8568G", "G8570A", "T8595C", "C8597T", "A8708T", "C8747T", "C8751T", "G8787A", "A8812C", "T8831C", "C8840T", "A8876G", "G8882A", "G8885A", "C8906A", "A8917C", "T8923A", "T8927C", "A8930T", "G8945A", "C8990T", "G9005A", "T9018G", "C9075T", "A9134-"], "INT": ["V112I", "V135I", "D167E", "G193R", "A265V"], "RT-p51": ["P4S", "K20R", "E36D", "T39A", "K174R", "A200E", "E248D", "S251C", "I292V", "T322A", "R358K", "K366R", "K395R"], "RT-p66": ["P4S", "K20R", "E36D", "T39A", "K174R", "A200E", "E248D", "S251C", "I292V", "T322A", "R358K", "K366R", "K395R", "K524E", "E527K"], "gp120": ["-3G", "E4D", "T35A", "V37A", "N64D", "M67I", "L97F", "T104Q", "-106I", "-107S", "-109N", "-110S", "-112N", "-116H", "-117R", "-118N", "-119I", "-120S", "-121I", "-122E", "-123M", "-124R", "E136I", "K141Q", "V144M", "Y145H", "V153L", "V154L", "Q155P", "N158E", "N159Q", "S160I", "N161Q", "R164M", "V180I", "E204K", "T208S", "K212S", "I242V", "I244L", "I249F", "L260F", "P263S", "K265E", "T269I", "I281M", "F289L", "S306T", "N312K", "T313A", "K316R", "R322G", "K323E", "-328K", "T334N", "S337T", "L341V", "T366N", "-368H", "-370T", "-372N", "-373D", "-376Y", "-377T", "-379D", "-381A", "-382N", "N383S", "-384S", "L388I", "E414K", "R416E", "E418K", "T427I", "N433T", "N435T", "G443V", "D446E", "H472Y"], "gp41": ["L4M", "V7F", "G13A", "S35T", "H53Q", "K56R", "S101T", "D110E", "D129S", "E137Q", "D163N", "A189V", "V190I", "I193V", "H211P", "P219L", "D232G", "R261G", "L277R", "N298T", "N302S", "I307T", "V318I", "R324G", "G326I", "A328N", "N331R"], "nef": ["Q15K", "P24E", "T28K", "A50G", "T51N", "A53P", "L76V", "F85L", "Y120F", "I133T", "D149N", "N157T", "R192T", "I194K"], "p17": ["V7I", "D14E", "A15L", "N47D", "M61I", "A83V", "D93N", "I104L", "I107V", "N109A", "S111N", "Q113H", "T115A"], "p2": ["-10P"], "p24": ["V3L", "V11A", "H12Y", "S14N", "H87Q", "N183G", "T210S"], "p6": ["S14T", "L15V", "S23P", "-26Q", "K27-", "L35T"], "p7": ["R3K", "T11R", "-13I"], "pro": ["G16E", "I64M"], "rev": ["D7S", "A15I", "K20R", "E79G", "E87K", "S106P", "E116N"], "tat": ["E2D", "R53K", "S61N", "T76P", "P84S"], "vif": ["I31V", "K36R", "D37A", "H73Q", "R90K", "D101E", "S116A", "G126E", "R130S", "R132K", "Q136P", "T155A", "T157K", "T159R", "K160R", "K176E", "G185E", "R187H"], "vpr": ["Q3R", "E55A", "E58L", "A93S"], "vpu": ["S3A", "V13I", "K37R", "K41Q", "L43I", "M65V", "-69Y", "-70D", "-71N", "-72I", "-73L", "N79Y"]}, "labels": {"aa": "INT: V112I, V135I, D167E, G193R, A265V; RT-p51: P4S, K20R, E36D, T39A, K174R, A200E, E248D, S251C, I292V, T322A, R358K, K366R, K395R; RT-p66: P4S, K20R, E36D, T39A, K174R, A200E, E248D, S251C, I292V, T322A, R358K, K366R, K395R, K524E, E527K; gp120: -3G, E4D, T35A, V37A, N64D, M67I, L97F, T104Q, -106I, -107S, -109N, -110S, -112N, -116H, -117R, -118N, -119I, -120S, -121I, -122E, -123M, -124R, E136I, K141Q, V144M, Y145H, V153L, V154L, Q155P, N158E, N159Q, S160I, N161Q, R164M, V180I, E204K, T208S, K212S, I242V, I244L, I249F, L260F, P263S, K265E, T269I, I281M, F289L, S306T, N312K, T313A, K316R, R322G, K323E, -328K, T334N, S337T, L341V, T366N, -368H, -370T, -372N, -373D, -376Y, -377T, -379D, -381A, -382N, N383S, -384S, L388I, E414K, R416E, E418K, T427I, N433T, N435T, G443V, D446E, H472Y; gp41: L4M, V7F, G13A, S35T, H53Q, K56R, S101T, D110E, D129S, E137Q, D163N, A189V, V190I, I193V, H211P, P219L, D232G, R261G, L277R, N298T, N302S, I307T, V318I, R324G, G326I, A328N, N331R; nef: Q15K, P24E, T28K, A50G, T51N, A53P, L76V, F85L, Y120F, I133T, D149N, N157T, R192T, I194K; p17: V7I, D14E, A15L, N47D, M61I, A83V, D93N, I104L, I107V, N109A, S111N, Q113H, T115A; p2: -10P; p24: V3L, V11A, H12Y, S14N, H87Q, N183G, T210S; p6: S14T, L15V, S23P, -26Q, K27-, L35T; p7: R3K, T11R, -13I; pro: G16E, I64M; rev: D7S, A15I, K20R, E79G, E87K, S106P, E116N; tat: E2D, R53K, S61N, T76P, P84S; vif: I31V, K36R, D37A, H73Q, R90K, D101E, S116A, G126E, R130S, R132K, Q136P, T155A, T157K, T159R, K160R, K176E, G185E, R187H; vpr: Q3R, E55A, E58L, A93S; vpu: S3A, V13I, K37R, K41Q, L43I, M65V, -69Y, -70D, -71N, -72I, -73L, N79Y"}}}]}, {"name": "CRF02_AG_NODE_0000008", "node_attrs": {"div": 0.10502, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A645G", "G791A", "A878G", "A1278G", "C1454A", "G1474A", "C1478T", "A1657G", "T2080C", "T2116A", "G2389A", "A2629G", "C2823A", "C2828G", "G3010A", "A3385G", "G3595A", "C3688A", "G3756A", "C4381T", "G4549A", "A4709G", "C4965G", "G5276A", "T5293A", "G5312A", "T5448C", "C5496A", "G5594A", "C5734A", "T5796A", "-5869A", "G5907A", "A6030C", "G6076A", "-6165G", "-6180C", "-6200A", "-6204G", "-6215A", "-6219A", "G6227-", "A6228-", "T6325-", "-6340T", "G6583A", "A6605G", "T6655C", "G6743A", "C6758T", "G6771A", "A6800C", "C6824T", "-6833A", "T6849A", "C6850A", "C6855A", "-6994C", "-6998A", "-7000A", "A7020C", "G7094A", "A7096C", "C7324T", "A7440G", "G7441A", "A7701C", "T7783C", "G7846A", "G7868A", "G8019A", "T8047C", "A8076G", "T8164C", "C8165A", "T8167C", "G8216A", "G8255A", "G8292T", "C8293T", "G8329A", "C8740T", "G8762A", "G8798A", "T8813C", "G8893A"], "RT-p51": ["I178M", "P243H", "Q245E"], "RT-p66": ["I178M", "P243H", "Q245E", "S554N"], "gp120": ["-5K", "E59A", "N251D", "S306N", "K316Q", "H324Y", "T329-", "-370G", "Q389P"], "gp41": ["K46R", "N133T", "A189T", "S239N", "H258R", "L288I", "D305N", "V318I", "R330L"], "nef": ["R184K"], "p17": ["I104V"], "p6": ["-26Q", "K27-"], "p7": ["R3K"], "rev": ["S67P", "S106H", "S107P"], "tat": ["N40K"], "vif": ["Q127E"], "vpr": ["V70I"], "vpu": ["L43I"]}, "labels": {"aa": "RT-p51: I178M, P243H, Q245E; RT-p66: I178M, P243H, Q245E, S554N; gp120: -5K, E59A, N251D, S306N, K316Q, H324Y, T329-, -370G, Q389P; gp41: K46R, N133T, A189T, S239N, H258R, L288I, D305N, V318I, R330L; nef: R184K; p17: I104V; p6: -26Q, K27-; p7: R3K; rev: S67P, S106H, S107P; tat: N40K; vif: Q127E; vpr: V70I; vpu: L43I"}}, "children": [{"name": "KX389647", "node_attrs": {"div": 0.14903, "accession": "KX389647", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "NG"}, "date": {"value": 2012.0}, "Strain_name": {"value": "12NG060304"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "T357C", "A378T", "T473A", "T506C", "A509G", "C513A", "G518A", "A562G", "A579G", "C614A", "A656G", "G671A", "A730T", "G771T", "G803A", "T808C", "G821A", "T852A", "G866A", "C897T", "G911A", "T936C", "A978C", "G998A", "A1025C", "A1049G", "A1097G", "A1101G", "T1121C", "A1145G", "C1187T", "A1279C", "G1298A", "G1355A", "G1451A", "-1452C", "-1453A", "-1455T", "A1529G", "A1579G", "G1619A", "A1643G", "C1721T", "T1724A", "C1752T", "C1756T", "A1758C", "G1771A", "G1848A", "A1894T", "A1900G", "A1903C", "A1920G", "T1986A", "G2074A", "A2154G", "G2155A", "G2156A", "A2176G", "G2273A", "A2317G", "G2341A", "C2356T", "G2498A", "G2539A", "G2548A", "A2572C", "A2615C", "T2668A", "G2686A", "A2695C", "G2707A", "A2715C", "C2740T", "A2794G", "A2841G", "C2944T", "G3004A", "A3079C", "A3103G", "A3165G", "C3178T", "G3221T", "C3252T", "A3280G", "G3293A", "G3431T", "G3439A", "G3523A", "A3529G", "T3541A", "C3542T", "G3569C", "A3651G", "G3679A", "C3682A", "G3686A", "C3773T", "A3775G", "G3808T", "A3819T", "T3850A", "T3853C", "C3889T", "C3892T", "A3982G", "A3989G", "C3994T", "G4063A", "A4076C", "T4079C", "A4114C", "C4129T", "A4130C", "G4131C", "C4132T", "A4186G", "A4293G", "A4363G", "A4423G", "C4534T", "T4656C", "T4682A", "A4696G", "C4757T", "T4776G", "C4820A", "C4844T", "A4850G", "C4857A", "G4859A", "A4862G", "T4912A", "G4913A", "C4914T", "A4944G", "G4962A", "A4976C", "G5030A", "C5034T", "G5036A", "A5038G", "A5051T", "A5094G", "A5119G", "A5134G", "T5188C", "A5215C", "G5225A", "A5227C", "A5236G", "G5246A", "A5248C", "G5272A", "A5277T", "A5287G", "T5357C", "G5403T", "G5444A", "T5483A", "G5484T", "G5499A", "G5531A", "C5538A", "C5539A", "A5548C", "C5563G", "A5570G", "C5578T", "G5620C", "A5622G", "G5708A", "G5715A", "A5800C", "T5824C", "A5825C", "A5830G", "A5840G", "A5843T", "T5860-", "-5863A", "A5866C", "A6022G", "A6024G", "A6045G", "G6079A", "-6164C", "-6166G", "-6169T", "A6176-", "-6179G", "T6181C", "A6182C", "T6184A", "A6186T", "-6189A", "A6191C", "T6193A", "-6195C", "A6197G", "-6198G", "-6201A", "-6202T", "-6203A", "-6205A", "-6207G", "-6208T", "-6210T", "-6212A", "-6213C", "-6214T", "-6216C", "-6217A", "-6220T", "A6221G", "G6224-", "G6225-", "A6226-", "A6229-", "A6232G", "T6250G", "A6275G", "A6282G", "G6284A", "T6287C", "G6303A", "A6318T", "T6322C", "G6323-", "A6324-", "A6330G", "T6331A", "A6333C", "G6336C", "T6337C", "A6376C", "T6400C", "T6436C", "G6458A", "A6465C", "A6489C", "A6535G", "C6545T", "C6613T", "C6618A", "G6634A", "A6636G", "A6648G", "G6669A", "A6684C", "T6688C", "G6689T", "T6690G", "G6693A", "C6721T", "G6725A", "G6732A", "T6733G", "A6734G", "T6745C", "A6759C", "A6764G", "T6766A", "A6798G", "A6805G", "A6809C", "C6810T", "-6830C", "-6831A", "-6832G", "-6835T", "A6836G", "T6838A", "C6843T", "A6854C", "T6856A", "A6857C", "A6858C", "C6859A", "T6860C", "T6863C", "C6885T", "A6886G", "C6888T", "A6889G", "T6895C", "G6905A", "T6916C", "A6950G", "-6956A", "-6957T", "A6962G", "-6963G", "-6964C", "-6968G", "-6969T", "-6970T", "-6972A", "-6973C", "-6974C", "-6975A", "-6976T", "-6977A", "-6978C", "-6979A", "-6980G", "-6981A", "-6982A", "-6983T", "-6984C", "-6985A", "A6990C", "C6993A", "-6995C", "-6996A", "-6997T", "G7004A", "T7009C", "C7014T", "G7054A", "A7057G", "G7072A", "A7089G", "A7107T", "C7127T", "A7151G", "A7154G", "A7155C", "T7156A", "G7162T", "A7164G", "G7177A", "A7189G", "A7252G", "C7313A", "G7322C", "T7325C", "C7328T", "G7390A", "T7408C", "C7433T", "G7477A", "G7534A", "C7623G", "A7629G", "G7677A", "A7700G", "T7702A", "C7801A", "A7807G", "T7825C", "T7843G", "T7852C", "G7918A", "C7959T", "A7975C", "G8001C", "C8009A", "A8023G", "A8032G", "G8050A", "G8098A", "C8103T", "G8133A", "C8146T", "T8155C", "T8159G", "A8170T", "A8188G", "C8189A", "T8243G", "C8251T", "A8288C", "T8290C", "A8294C", "C8321T", "A8386G", "A8414T", "A8459C", "A8461G", "G8476A", "C8488T", "C8491A", "G8499A", "C8500A", "T8501G", "T8505G", "G8506T", "T8546C", "C8590G", "A8591G", "C8597G", "T8646C", "A8652C", "G8666T", "T8701A", "C8702T", "G8717T", "G8732A", "T8741C", "C8747T", "C8751T", "C8756A", "T8757C", "A8774G", "C8775T", "A8780G", "A8784G", "G8786A", "G8793C", "C8794A", "A8795G", "G8814C", "G8822A", "A8823G", "G8830A", "G8864T", "A8870T", "G8871C", "A8879G", "G8886A", "C8888A", "G8905C", "A8917G", "A8924G", "C8928A", "C8934A", "A8980G", "A8991G", "G9005A", "T9018G"], "INT": ["E11D", "Y15F", "D25E", "I72V", "I101L", "S119P", "K173R"], "RT-p51": ["K20R", "V21I", "V60I", "V135I", "K174Q", "E207A", "K249R", "E328D", "K357R", "A376S", "T386I", "A400T"], "RT-p66": ["K20R", "V21I", "V60I", "V135I", "K174Q", "E207A", "K249R", "E328D", "K357R", "A376S", "T386I", "A400T", "A446S", "H483Y", "E492Q", "N519S", "D529E", "V531I"], "gp120": ["-3D", "E4-", "I56M", "H57R", "N64S", "N108-", "N111-", "N113-", "I126M", "N132K", "K141E", "K143R", "V144M", "Y145H", "R150K", "Q155L", "N158G", "N159T", "S160T", "D202N", "E204T", "K212T", "T255N", "N261S", "K265R", "K277T", "V279W", "R280H", "A291T", "G293E", "D294V", "D297N", "H302S", "N304E", "K307R", "T319L", "-326Q", "-328E", "F333K", "T334F", "N335Q", "S336P", "S337P", "T344M", "T345M", "G351R", "T366A", "-368R", "-372V", "-373N", "-374H", "-375T", "-376E", "-377S", "-379T", "T380N", "-381H", "-382T", "-384N", "T387I", "M406I", "Q412R", "E414I", "E418V", "N433E", "N434A", "E436N", "N437S"], "gp41": ["L4M", "V7L", "F8L", "L9F", "K77R", "T107S", "N109S", "S125N", "T133A", "N166K", "P219L", "E224D", "R233T", "A267V", "W286G", "L296I", "W314G", "I329L", "N331H", "L340F"], "nef": ["Q15R", "R39S", "H40R", "S45N", "A49V", "A50D", "A53K", "C55V", "A83G", "F85L", "Y102H", "K104Q", "E108D", "Q125H", "F139L", "M148V", "A151Q", "E158Q", "N161D", "S163N", "E174D", "E176D", "D177H", "V182I", "R188T", "I194M", "L198M"], "p17": ["A15S", "L60I", "M61I", "K76R", "I82V", "D93E", "I107M", "Y132F"], "p2": ["-10Q", "N11S", "-12N"], "p24": ["V26A", "S41T", "V83L", "E98D", "I124V", "N183A"], "p6": ["P25L", "R31K"], "p7": ["K38R"], "pro": ["G17E", "E35D", "K41R", "L63H"], "rev": ["G6R", "A8E", "E11D", "I19V", "Q51H", "A54E", "I59V", "T62A", "A68T", "D84N", "P100S", "S103P", "V104G", "S108F", "T114D"], "tat": ["E9D", "S23N", "V29I", "L36Y", "R52Q", "T58P", "Q63E", "H65R", "P68S", "P84S"], "vif": ["D37G", "L64V", "D78E", "Q91K", "L109Q", "H110Y", "I120V", "G126R", "R130S", "K151R", "T170A", "Q178R", "H183R"], "vpr": ["G41S", "E48N", "E58I", "I61M"], "vpu": ["E5Q", "R34K", "M65L", "-76P", "-77D", "N79I"]}, "labels": {"aa": "INT: E11D, Y15F, D25E, I72V, I101L, S119P, K173R; RT-p51: K20R, V21I, V60I, V135I, K174Q, E207A, K249R, E328D, K357R, A376S, T386I, A400T; RT-p66: K20R, V21I, V60I, V135I, K174Q, E207A, K249R, E328D, K357R, A376S, T386I, A400T, A446S, H483Y, E492Q, N519S, D529E, V531I; gp120: -3D, E4-, I56M, H57R, N64S, N108-, N111-, N113-, I126M, N132K, K141E, K143R, V144M, Y145H, R150K, Q155L, N158G, N159T, S160T, D202N, E204T, K212T, T255N, N261S, K265R, K277T, V279W, R280H, A291T, G293E, D294V, D297N, H302S, N304E, K307R, T319L, -326Q, -328E, F333K, T334F, N335Q, S336P, S337P, T344M, T345M, G351R, T366A, -368R, -372V, -373N, -374H, -375T, -376E, -377S, -379T, T380N, -381H, -382T, -384N, T387I, M406I, Q412R, E414I, E418V, N433E, N434A, E436N, N437S; gp41: L4M, V7L, F8L, L9F, K77R, T107S, N109S, S125N, T133A, N166K, P219L, E224D, R233T, A267V, W286G, L296I, W314G, I329L, N331H, L340F; nef: Q15R, R39S, H40R, S45N, A49V, A50D, A53K, C55V, A83G, F85L, Y102H, K104Q, E108D, Q125H, F139L, M148V, A151Q, E158Q, N161D, S163N, E174D, E176D, D177H, V182I, R188T, I194M, L198M; p17: A15S, L60I, M61I, K76R, I82V, D93E, I107M, Y132F; p2: -10Q, N11S, -12N; p24: V26A, S41T, V83L, E98D, I124V, N183A; p6: P25L, R31K; p7: K38R; pro: G17E, E35D, K41R, L63H; rev: G6R, A8E, E11D, I19V, Q51H, A54E, I59V, T62A, A68T, D84N, P100S, S103P, V104G, S108F, T114D; tat: E9D, S23N, V29I, L36Y, R52Q, T58P, Q63E, H65R, P68S, P84S; vif: D37G, L64V, D78E, Q91K, L109Q, H110Y, I120V, G126R, R130S, K151R, T170A, Q178R, H183R; vpr: G41S, E48N, E58I, I61M; vpu: E5Q, R34K, M65L, -76P, -77D, N79I"}}}, {"name": "JN248580", "node_attrs": {"div": 0.15158, "accession": "JN248580", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "NG"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06NG_SC11"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T362C", "A370G", "A371T", "C379G", "G407A", "C435T", "C467T", "C476T", "C513T", "C539T", "G542A", "G607A", "A644G", "A653G", "G665A", "A674C", "G771A", "C772G", "C773T", "T782C", "C917T", "A938G", "A989G", "T992G", "G1016A", "A1079G", "C1091T", "A1115G", "A1191C", "T1229C", "G1265A", "A1279G", "G1313A", "C1322T", "T1403C", "G1404A", "T1439C", "T1444C", "A1445C", "G1451-", "-1455G", "A1458C", "A1461G", "G1487A", "C1490G", "C1517T", "C1550T", "G1562A", "T1646C", "G1685A", "A1709G", "T1724G", "T1741G", "-1746T", "-1747C", "-1748C", "T1754G", "C1756A", "G1757A", "A1758-", "A1759-", "G1760-", "A1781G", "T1836C", "G1839A", "C1873T", "A1939T", "C1960T", "G1972A", "T2104C", "G2119A", "T2206C", "G2215A", "A2233G", "G2248A", "T2257C", "C2281T", "C2353T", "A2377T", "C2386A", "C2420T", "G2509A", "C2671T", "C2694A", "A2722G", "C2723T", "G2727A", "T2770C", "A2839T", "G2843A", "G2878A", "A2881G", "A2919G", "G2926A", "A3001G", "T3002C", "T3049C", "C3055T", "T3121C", "A3130T", "A3217G", "T3219C", "G3220A", "G3236A", "A3277G", "A3279G", "A3295C", "T3328C", "T3399C", "C3475T", "T3493A", "A3520G", "C3545T", "C3550T", "A3562G", "C3589T", "G3769A", "A3796G", "A3805G", "C3857T", "T3865A", "A3874C", "A3880G", "G3916A", "A3961G", "T3977C", "A3985G", "C3995T", "G3997A", "A4000G", "A4107G", "C4117T", "C4138T", "C4216T", "C4501T", "T4543A", "A4592C", "G4631A", "G4642A", "C4665T", "T4676C", "T4678G", "C4679A", "T4697G", "C4715T", "T4730C", "C4761T", "G4802A", "T4805A", "G4818A", "C4820T", "G4838A", "G4855A", "A4865G", "T5043A", "A5055G", "C5056T", "G5059A", "G5075A", "A5086G", "G5087A", "C5111A", "A5112G", "G5140A", "T5147G", "T5148C", "A5150G", "A5161C", "C5168T", "T5203C", "G5212A", "C5221T", "T5264G", "A5277G", "T5313C", "G5359C", "G5386A", "A5461T", "A5602T", "A5613G", "T5614G", "G5644A", "A5685G", "T5688C", "G5709A", "A5720G", "G5730A", "G5747A", "A5787T", "T5788A", "T5789C", "T5791G", "C5792A", "C5793A", "A5794G", "C5795A", "C5797-", "A5800G", "G5803C", "G5805C", "A5806T", "T5807C", "G5808T", "G5809-", "G5810-", "G5811T", "-5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5841C", "A5846C", "C5887T", "C5911T", "G5915C", "T5956G", "T5964C", "A5995T", "A6001G", "A6016C", "A6020T", "A6044C", "T6046G", "A6119C", "T6134C", "-6164A", "-6166C", "-6169C", "-6170G", "-6171T", "-6172T", "-6173A", "-6174A", "-6175C", "-6177A", "-6178C", "-6179T", "C6183G", "A6185C", "-6189T", "A6191T", "A6192G", "-6195T", "T6196C", "A6197T", "-6198A", "T6199G", "-6201T", "-6202C", "-6203T", "-6205T", "-6207T", "-6208C", "A6209T", "-6210A", "A6211G", "-6212T", "-6213G", "-6214A", "-6216A", "-6217T", "-6220G", "A6222G", "A6261T", "T6307A", "C6317G", "A6324G", "-6325A", "T6334C", "A6339G", "A6359G", "C6364A", "G6368A", "C6375A", "G6401C", "G6403A", "C6427T", "G6451A", "T6460G", "A6464G", "G6466T", "C6483T", "G6547A", "T6551C", "G6572A", "A6573G", "G6575A", "G6577T", "A6578G", "G6581A", "T6582C", "C6591T", "A6635G", "A6636T", "A6647C", "C6660G", "A6668G", "G6691A", "G6716A", "T6745G", "A6765C", "A6773G", "A6781C", "C6797A", "A6799C", "G6806A", "C6807A", "T6808A", "A6809G", "A6818G", "G6819A", "G6820A", "A6822C", "G6823A", "-6835G", "A6839C", "C6840G", "A6841C", "A6858G", "C6862T", "G6871A", "T6874C", "T6875A", "T6922C", "G6936C", "T6946C", "A6947-", "G6948-", "C6949-", "A6950-", "C6951-", "T6952-", "T6953-", "G6954-", "G6955-", "T6958-", "A6959-", "A6960-", "T6961-", "A6962-", "A6965-", "C6966-", "T6967-", "A6971-", "A6986-", "A6987-", "T6988-", "C6993G", "-6995T", "-6996T", "-6997A", "A7005G", "C7006A", "A7065T", "T7095A", "G7101C", "G7102A", "G7106A", "A7108T", "G7147T", "A7152G", "A7160G", "A7163C", "A7164C", "T7180G", "C7201T", "T7243C", "C7264T", "C7267T", "C7268A", "T7270A", "T7308C", "T7309C", "G7322T", "G7534T", "A7553C", "T7609C", "C7633G", "C7655A", "G7657A", "T7666G", "G7688A", "C7747T", "G7759A", "A7782C", "C7792T", "T7843A", "T7853C", "G7871A", "C7874A", "C7878A", "G7918T", "G7957A", "A8011C", "C8051A", "G8055A", "G8079A", "G8087A", "T8092A", "G8093C", "G8134C", "C8149T", "T8166C", "T8171G", "C8172T", "G8194A", "T8223C", "C8238G", "T8239C", "G8253C", "A8263G", "G8268T", "A8272G", "G8276A", "C8277T", "A8303G", "G8304T", "A8308G", "A8326G", "T8332C", "A8385C", "G8387A", "C8412G", "C8413A", "C8425A", "T8450C", "G8458A", "C8471A", "G8487T", "G8490A", "C8491G", "G8499C", "G8516A", "A8525G", "A8531C", "G8555A", "G8558C", "T8563C", "T8567A", "A8604G", "C8607T", "A8608T", "A8636T", "G8666A", "C8723T", "A8726T", "G8738A", "G8753A", "A8754T", "C8755G", "T8770A", "G8808A", "C8809A", "G8814A", "A8829T", "C8840T", "T8847A", "A8894G", "T8903C", "T8913A", "T8914G", "T8915A", "A8916C", "T8947A", "A8967C", "G8968A", "A8970G", "G8971C", "T8973-", "A9042G", "T9108C", "A9128G", "C9133T", "A9135G", "G9137A"], "INT": ["K111R", "D256E", "K273Q", "D286N"], "RT-p51": ["A200E", "R211K", "E248D", "D250N", "K275R", "V375A", "V381I", "K395R", "V435A"], "RT-p66": ["A200E", "R211K", "E248D", "D250N", "K275R", "V375A", "V381I", "K395R", "V435A"], "gp120": ["E21Q", "D34E", "V37A", "Q54H", "I56L", "N64Q", "K89Q", "T104S", "-106V", "-107N", "-109S", "-110S", "E125-", "E136V", "Q155E", "N157G", "N159R", "N161S", "S162Q", "N169D", "A172T", "T174K", "E183Q", "D202E", "E204D", "P210L", "E240R", "E241N", "I242V", "V243T", "S246F", "N261V", "K265Q", "T269S", "N272G", "A288T", "D297K", "H302Y", "N304T", "K307G", "E309D", "R315N", "A318K", "T319A", "R322E", "K323T", "-326K", "-328R", "I332K", "T334N", "N335S", "L341I", "G361A", "S365N", "T366S", "W367L", "-368T", "N378-", "T380-", "N383-", "T385-", "Q404L", "E414N", "R416T", "E418N", "N434R", "N437P", "H472K"], "gp41": ["V2A", "V7F", "K77S", "I84L", "D110E", "L118I", "D121E", "D129N", "N160T", "V190I", "L191I", "T192N", "S251N", "R259Q", "D262N", "F263L", "V264L", "I288T", "S290V", "I307T", "A312G", "R317T", "G322V", "A325I", "R334V"], "nef": ["P24E", "T28K", "R39K", "A49S", "A50S", "A53P", "E63D", "V74A", "S88G", "H89F", "E98D", "Y120F", "T138C", "F143Y", "A156N", "E158K", "S163C", "C169S", "R188S", "F191R", "R192Q", "F202Y"], "p17": ["K12S", "A15R", "R91K", "Q113H"], "p2": ["V7A", "N11A", "-12H", "I13V"], "p24": ["V83I", "H87Q", "N183G", "G225S"], "p6": ["I21R"], "pro": ["V13A", "R14K"], "rev": ["A37T", "I55L", "A68E", "R80K", "C82T", "G96Q", "Q101*", "E116K"], "tat": ["V4I", "V29L", "G83D"], "vif": ["E2D", "R19K", "H27Y", "I31R", "D37E", "H73Q", "D78N", "R90K", "L153I", "T157V", "R158K", "K167R", "N175K", "K176E", "G185E", "S188P", "H192P"], "vpr": ["Q3R", "F15A", "N16D", "W54G", "E58R", "I70T", "R85P", "G94D"], "vpu": ["S3A", "V13I", "K38R", "R47K", "E60D", "L61T", "S62E", "T63E", "L64-", "G68-", "-70E", "-71M", "-72G", "-73Y", "-74D", "-75N", "-76I", "-77L", "D80A"]}, "labels": {"aa": "INT: K111R, D256E, K273Q, D286N; RT-p51: A200E, R211K, E248D, D250N, K275R, V375A, V381I, K395R, V435A; RT-p66: A200E, R211K, E248D, D250N, K275R, V375A, V381I, K395R, V435A; gp120: E21Q, D34E, V37A, Q54H, I56L, N64Q, K89Q, T104S, -106V, -107N, -109S, -110S, E125-, E136V, Q155E, N157G, N159R, N161S, S162Q, N169D, A172T, T174K, E183Q, D202E, E204D, P210L, E240R, E241N, I242V, V243T, S246F, N261V, K265Q, T269S, N272G, A288T, D297K, H302Y, N304T, K307G, E309D, R315N, A318K, T319A, R322E, K323T, -326K, -328R, I332K, T334N, N335S, L341I, G361A, S365N, T366S, W367L, -368T, N378-, T380-, N383-, T385-, Q404L, E414N, R416T, E418N, N434R, N437P, H472K; gp41: V2A, V7F, K77S, I84L, D110E, L118I, D121E, D129N, N160T, V190I, L191I, T192N, S251N, R259Q, D262N, F263L, V264L, I288T, S290V, I307T, A312G, R317T, G322V, A325I, R334V; nef: P24E, T28K, R39K, A49S, A50S, A53P, E63D, V74A, S88G, H89F, E98D, Y120F, T138C, F143Y, A156N, E158K, S163C, C169S, R188S, F191R, R192Q, F202Y; p17: K12S, A15R, R91K, Q113H; p2: V7A, N11A, -12H, I13V; p24: V83I, H87Q, N183G, G225S; p6: I21R; pro: V13A, R14K; rev: A37T, I55L, A68E, R80K, C82T, G96Q, Q101*, E116K; tat: V4I, V29L, G83D; vif: E2D, R19K, H27Y, I31R, D37E, H73Q, D78N, R90K, L153I, T157V, R158K, K167R, N175K, K176E, G185E, S188P, H192P; vpr: Q3R, F15A, N16D, W54G, E58R, I70T, R85P, G94D; vpu: S3A, V13I, K38R, R47K, E60D, L61T, S62E, T63E, L64-, G68-, -70E, -71M, -72G, -73Y, -74D, -75N, -76I, -77L, D80A"}}}]}]}, {"name": "CRF02_AG_NODE_0000009", "node_attrs": {"div": 0.09717, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G762A", "G771T", "A1694G", "G4581A", "A4937C", "G5864-", "A6192-", "T6196-", "A6197-", "T6199-", "A6206-", "G6323A", "A6464G", "G6691A", "G6716A", "A7161C", "A7873G", "A9135G"], "INT": ["R269K"], "gp120": ["K18R", "A288T", "-328N", "T334A"], "gp41": ["K77R"], "nef": ["Y120F", "I133T"], "vif": ["E117D"]}, "labels": {"aa": "INT: R269K; gp120: K18R, A288T, -328N, T334A; gp41: K77R; nef: Y120F, I133T; vif: E117D"}}, "children": [{"name": "CRF02_AG_NODE_0000010", "node_attrs": {"div": 0.09844, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A978G", "G3756A", "A5463G", "T6148C", "-6179A", "-6180G", "C6840A", "-6963G", "-6964C", "A7120T", "G8814A", "T8903C", "T8923C"], "RT-p66": ["S554N"], "gp120": ["T104H", "N159S", "T308A", "T329K", "N435S"], "gp41": ["V264A"], "nef": ["Q15K", "E158K", "I194T"], "vif": ["I31V"]}, "labels": {"aa": "RT-p66: S554N; gp120: T104H, N159S, T308A, T329K, N435S; gp41: V264A; nef: Q15K, E158K, I194T; vif: I31V"}}, "children": [{"name": "CRF02_AG_NODE_0000011", "node_attrs": {"div": 0.10802, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A534G", "T662G", "A887G", "C1136T", "G1247A", "A1496G", "G1508A", "T1574C", "A1607G", "G1661A", "C1752T", "A1770G", "G1848A", "A1903C", "A2329G", "C2584T", "A2615G", "T2668A", "C2822A", "T2968G", "A2969G", "A2975C", "G2984A", "G3071A", "T3219C", "T3355G", "C3499T", "G3523A", "T3577C", "C3682T", "T3829C", "A3862G", "A4000G", "A4423G", "A4650C", "G4727A", "A4740T", "G4855A", "G5018A", "G5143A", "A5277G", "G5484A", "C5538A", "C5551T", "T5687A", "-5824C", "C5887T", "T6046G", "-6166T", "-6167A", "-6171T", "-6172C", "-6173A", "-6174A", "-6178C", "T6184C", "-6214A", "G6224T", "A6262G", "A6335G", "G6634A", "A6647C", "A6691G", "A6736-", "G6774A", "T6875A", "A6959G", "-6968A", "-6975C", "-6978A", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "C7088A", "C7114T", "A7155G", "A7189G", "A7231G", "A7258G", "C7590A", "G7677A", "T7702G", "A7705G", "A7706C", "C7878A", "A7992G", "T8094C", "C8103T", "T8159G", "A8288T", "G8388A", "T8504C", "A8525G", "G8588A", "C8676T", "C8740T", "C8747T", "T8849C", "A8904C", "G8905A"], "RT-p51": ["K174E", "P243T", "D291E", "I292V", "T294P", "E297K", "V326I", "V375A"], "RT-p66": ["K174E", "P243T", "D291E", "I292V", "T294P", "E297K", "V326I", "V375A"], "gp120": ["N64K", "-110T", "S162Q", "G293-", "D294-"], "gp41": ["T96N", "S125N", "N133K", "I135L", "T192N", "D230G", "A267V", "W286G", "I329F"], "nef": ["V16I", "T133I", "R188H"], "p1": ["S9N"], "p17": ["T67A", "N109K"], "p6": ["R31G"], "pro": ["G17E", "E35D"], "rev": ["V104G"], "tat": ["P59S"], "vif": ["N22H", "S52C", "S186N"], "vpr": ["E58G"], "vpu": ["F27Y", "-73H", "-74D", "-75N", "-76I", "-77L"]}, "labels": {"aa": "RT-p51: K174E, P243T, D291E, I292V, T294P, E297K, V326I, V375A; RT-p66: K174E, P243T, D291E, I292V, T294P, E297K, V326I, V375A; gp120: N64K, -110T, S162Q, G293-, D294-; gp41: T96N, S125N, N133K, I135L, T192N, D230G, A267V, W286G, I329F; nef: V16I, T133I, R188H; p1: S9N; p17: T67A, N109K; p6: R31G; pro: G17E, E35D; rev: V104G; tat: P59S; vif: N22H, S52C, S186N; vpr: E58G; vpu: F27Y, -73H, -74D, -75N, -76I, -77L"}}, "children": [{"name": "KX389639", "node_attrs": {"div": 0.14515, "accession": "KX389639", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "NG"}, "date": {"value": 2009.0}, "Strain_name": {"value": "09NG010060"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G378C", "C379A", "G386A", "G452A", "A461C", "T466A", "C467T", "A491C", "T531C", "A540G", "A541G", "A599G", "A619G", "A656G", "C657A", "T808C", "T852A", "A891G", "G977A", "T992G", "T1100A", "G1126A", "A1146C", "A1161G", "A1193G", "C1209T", "A1277G", "C1299T", "T1329A", "G1339A", "C1342G", "-1452A", "A1461G", "A1475G", "T1481G", "G1493A", "C1536A", "G1568A", "A1588G", "C1598T", "A1620G", "A1691G", "C1706A", "T1722A", "A1743G", "G1771A", "A1908G", "T1910C", "T1986C", "T2080C", "T2087C", "A2113G", "A2203C", "A2210T", "A2260G", "T2296C", "A2395G", "C2452T", "A2461G", "C2464T", "G2518A", "A2560G", "C2613A", "T2620C", "A2629G", "G2632A", "G2704A", "G2705A", "A2706C", "G2707A", "C2723T", "A2743T", "C2831T", "C2885T", "G3220A", "C3225T", "A3226G", "G3236A", "A3277G", "T3328A", "A3388G", "C3391T", "G3438A", "G3439A", "G3494A", "A3532G", "G3563A", "T3602C", "G3643A", "A3655G", "G3679A", 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"p6": ["F15I", "T22A", "G31E"], "p7": ["N5K", "L24I", "K41R", "R52G"], "pro": ["N37S", "L63P"], "rev": ["A8D", "E10Q", "V16A", "A37T", "R44K", "I55L", "C82R", "I108V"], "tat": ["E2D", "K29M", "R56P", "G83D"], "vif": ["M8V", "K33R", "A35T", "K36R", "D37K", "F39V", "R41K", "V51A", "V65I", "D78E", "R90Q", "Q127G", "K141Q", "T157K", "R158Q", "K167R", "R181K"], "vpr": ["E48N", "I84T", "A93S", "S96P"], "vpu": ["A8T", "F16V", "K38R"]}, "labels": {"aa": "INT: I72V, N134S, V135I, D167E, G193E, T218I, A265V, D278G; RT-p51: E36D, T39S, T173K, I178M, E204T, T377M, V381I; RT-p66: E36D, T39S, T173K, I178M, E204T, T377M, V381I, R448K, V467I, G490R; gp120: -5Q, R18K, D34H, T35P, N102E, -105T, -106F, -107N, -109T, N111H, -112N, -114I, -115S, -116D, -117I, -118R, K141Q, K143R, Y145H, R150K, I156L, N157G, S159E, N161E, N201K, E240G, K265Q, N272G, -293N, -294I, K307E, E309G, N312S, K316E, T319K, R322K, N327-, L341V, S347T, S360T, G361N, T366I, -368E, N369D, -370N, T371A, -372T, -373S, -377S, -379H, -381G, -382S, -384K, V396I, Q412K, E414K, T427L, N433S, N434S, T436A, H472R; gp41: H53Q, K56R, N125D, D129N, I130M, E143D, A189T, G226S, R231K, G275A, I301T, D305N, V311I, L340F; nef: H40Y, F85L, L100I, K105R, F143Y, E176D, D177N, R178G, F202Y; p17: A15Q, E42D, F44Y, E52D, S66P, K69G, K95R, I107M, Q108K; p2: Q8T, Q9N, S10V, N11-, I13-; p24: V11I, V26A, S41T, M54V, H87Q, R132K, N139H, M144V, P160S, S200T, R203K, A204G; p6: F15I, T22A, G31E; p7: N5K, L24I, K41R, R52G; pro: N37S, L63P; rev: A8D, E10Q, V16A, A37T, R44K, I55L, C82R, I108V; tat: E2D, K29M, R56P, G83D; vif: M8V, K33R, A35T, K36R, D37K, F39V, R41K, V51A, V65I, D78E, R90Q, Q127G, K141Q, T157K, R158Q, K167R, R181K; vpr: E48N, I84T, A93S, S96P; vpu: A8T, F16V, K38R"}}}, {"name": "KX389644", "node_attrs": {"div": 0.14392, "accession": "KX389644", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "NG"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11NG050366"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": 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"p17": ["G24M", "K26R", "L60I", "K76R", "W86Y", "I104V", "I107Q", "A121D", "T122S", "S124-", "S125-"], "p2": ["V7A"], "p24": ["V11T", "T110N", "T178S", "E180D", "L190M", "G208A", "G225S"], "p6": ["F15L", "T22P"], "pro": ["C67Y", "K70R"], "rev": ["A8S", "K39R", "I59F", "T62S", "L83I", "D84N", "I102V", "I108S", "S112T"], "tat": ["S7R", "K29V", "R54Q", "Q63P"], "vif": ["V31T", "D61E", "H73N", "R90K", "H110Q", "Q136P", "T157I", "T159K", "T170A", "K176E"], "vpr": ["Q3R"], "vpu": ["Q2N", "S3A", "A7T", "V21I", "R34K", "R41K", "R45K", "D58E", "N81S", "L82W"]}, "labels": {"aa": "INT: K7R, E11D, A125P, I208L; RT-p51: A98G, D123E, E207D, K281R, K297R, Q334E, K395R; RT-p66: A98G, D123E, E207D, K281R, K297R, Q334E, K395R, S491P, S515T, L517I; gp120: N1S, A2-, -3T, E4K, -5K, K31R, V40I, E59A, H104S, -105N, -106V, -107K, -109G, N113-, E136M, K141I, Q142K, N158E, S160D, N161T, S181T, D202E, E204D, E241D, I242V, K262R, P263S, K265S, N267E, T269V, K277S, -282G, -283P, Q287-, T288-, F289-, Y290-, A291-, T292-, I295-, G296-, D297-, I298-, R299-; gp41: A1T, F8L, L9F, K46R, L54M, S101T, N105A, Y108H, N109D, D110S, K122E, I130T, K133R, N140S, N166H, I173T, M176I, V178I, I193V, R221G, L265S, A268V, L277N, S290A, L304I, I307L, R330L, R334V; nef: T28K, R39K, A49T, A50E, E63D, A83G, F120Y, M148L, A151E, E152A, S163C, I168V, M173L, R184K, F191L, T194Q; p1: K4R; p17: G24M, K26R, L60I, K76R, W86Y, I104V, I107Q, A121D, T122S, S124-, S125-; p2: V7A; p24: V11T, T110N, T178S, E180D, L190M, G208A, G225S; p6: F15L, T22P; pro: C67Y, K70R; rev: A8S, K39R, I59F, T62S, L83I, D84N, I102V, I108S, S112T; tat: S7R, K29V, R54Q, Q63P; vif: V31T, D61E, H73N, R90K, H110Q, Q136P, T157I, T159K, T170A, K176E; vpr: Q3R; vpu: Q2N, S3A, A7T, V21I, R34K, R41K, R45K, D58E, N81S, L82W"}}}]}, {"name": "CRF02_AG_NODE_0000012", "node_attrs": {"div": 0.09985, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G1567A", "C5237T", "T5448G", "T5964C", "-6178T", "G6329A", "-6340T", "-6834A", "-6972A", "-6973C", "G8330T", "A8746T", "G8929A"], "gp120": ["V37A", "-370S", "-384D"], "gp41": ["A343S"], "nef": ["A49S", "Y135F"], "p7": ["R34K"], "tat": ["N24K"], "vpr": ["H45Y"]}, "labels": {"aa": "gp120: V37A, -370S, -384D; gp41: A343S; nef: A49S, Y135F; p7: R34K; tat: N24K; vpr: H45Y"}}, "children": [{"name": "CRF02_AG_NODE_0000013", "node_attrs": {"div": 0.10515, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C456T", "C513A", "A656G", "C827T", "G1022A", "T1335C", "G1339A", "-1455G", "A1657G", "T1676C", "A1903C", "G1972A", "G2111A", "A2203C", "G2498A", "A2629G", "G2727A", "C3140T", "A3529G", "A3675G", "G3808T", "C4569T", "A4677G", "G4782A", "C4826T", "T4932A", "C5412T", "T5614C", "G5709A", "G5827-", "A5866C", "-5869T", "A6158G", "-6164C", "-6165A", "-6172C", "-6173A", "-6174A", "-6175C", "T6181C", "-6220G", "A6226G", "-6833A", "T6860C", "-6974A", "G7056A", "A7164C", "C7250A", "A7258G", "G7477A", "C7603T", "T7642C", "G7688A", "C8251T", "C8413A", "C8440T", "T8492C", "C8597T", "A8636T", "T8646C", "G8666T"], "INT": ["E11D", "A265V"], "RT-p51": ["E6K", "E36D", "V135I", "I178M", "R211K"], "RT-p66": ["E6K", "E36D", "V135I", "I178M", "R211K", "E527G"], "gp120": ["E4N", "N102D", "N108-", "-114S", "A334T", "-373N", "R401K", "E414V", "N437T", "L466I"], "gp41": ["D129N"], "nef": ["A33V", "E98D", "Y102H", "E108D"], "p17": ["L60I"], "p2": ["S10-", "N11A"], "p24": ["R203K", "P207S"], "pro": ["E35D"], "vif": ["V66I", "S116T"], "vpu": ["S3P"]}, "labels": {"aa": "INT: E11D, A265V; RT-p51: E6K, E36D, V135I, I178M, R211K; RT-p66: E6K, E36D, V135I, I178M, R211K, E527G; gp120: E4N, N102D, N108-, -114S, A334T, -373N, R401K, E414V, N437T, L466I; gp41: D129N; nef: A33V, E98D, Y102H, E108D; p17: L60I; p2: S10-, N11A; p24: R203K, P207S; pro: E35D; vif: V66I, S116T; vpu: S3P"}}, "children": [{"name": "AB485636", "node_attrs": {"div": 0.13729, "accession": "AB485636", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "LR"}, "Strain_name": {"value": "POC44951"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G43A", "G51A", "G164A", "C200T", "T206A", "A222-", "A224G", "A263G", "A388G", "C393A", "A404G", "C471A", "A503G", "A521G", "A541G", "G542T", "A554G", "T590G", "A604G", "A609T", "A619C", "G755A", "T763C", "G776A", "G803A", "T808C", "C845T", "T852A", "T936C", "T992G", "C1040T", "A1202G", "C1350T", "A1412G", "C1453-", "C1454-", "-1456C", "-1457C", "G1472A", "A1492G", "T1511C", "G1586A", "G1661A", "A1712G", "A1907G", "T1909G", "A1920G", "T1986C", "A2029G", "T2083C", "T2093C", "A2122T", "G2155A", "A2161G", "A2210G", "T2257C", "T2302C", "A2399G", "A2410G", "A2459G", "C2464T", "G2548A", "T2608C", "G2705C", "A2716C", "A2764G", "T2770C", "A2842G", "T2905C", "A2919G", "C2930T", "C3013T", "G3029A", "A3058G", "A3154G", "G3188A", "A3279G", "A3292T", "A3421G", "G3477A", "C3610T", "A3665G", "C3668T", "A3685G", "C3691T", "A3733G", "T3844A", "T3853C", "A3952G", "T3976C", "A3985G", "C4006A", "G4063A", "A4155G", "A4186T", "G4252A", "G4306A", "G4352A", "A4408G", "A4430C", "A4577C", "A4581G", "A4684G", "A4733T", "C4757T", "G4774C", "A4811G", "C4910T", "G4923A", "C4925A", "A4967T", "A4976C", "G4981T", "G4982C", "C4996A", "G5075A", "A5094G", "G5100A", "C5102T", "A5103C", "C5125T", "T5188G", "A5215G", "C5234G", "G5246A", "A5248C", "T5292C", "G5382T", "G5385A", "C5398A", "C5406A", "T5439G", "A5461G", "T5462C", "C5478T", "G5534A", "A5547G", "A5548T", "A5555G", "C5559T", "G5561A", "A5570G", "A5574G", "A5665G", "T5670G", "T5686G", "G5700A", "G5725C", "C5727T", "G5784A", "G5808T", "-5812T", "-5813A", "-5814C", "-5815G", "-5816A", "-5817T", "-5818A", "-5819T", "A5825-", "T5826-", "A5828-", "T5829-", "A5830-", "A5831-", "T5832-", "A5833-", "T5834-", "G5845A", "-5861A", "T5870A", "C5920A", "A5935C", "G5939A", "G5948A", "A5965T", "A6020G", "A6024T", "G6076T", "G6133A", "A6157G", "-6166T", "-6167A", "-6169C", "-6170A", "-6171T", "A6176T", "-6177C", "A6182C", "C6183T", "A6188G", "-6189A", "-6192C", "C6193-", "A6194-", "A6209-", "A6221C", "G6225A", "A6234G", "A6251G", "A6304G", "A6319G", "T6322C", "A6330G", "T6334A", "A6335G", "A6339G", "T6347C", "A6350G", "T6395A", "C6412T", "C6427T", "A6456G", "A6461G", "G6466T", "T6472G", "C6483A", "C6511T", "G6572A", "G6575A", "G6583A", "A6635G", "A6648G", "G6669A", "T6694A", "C6721T", "G6742A", "C6758T", "A6789C", "C6790A", "A6813G", "A6821G", "C6824T", "A6825C", "T6829G", "-6830G", "-6831G", "-6832G", "-6835T", "A6839C", "A6841C", "C6861A", "C6885T", "T6916C", "G6935A", "G6936T", "-6956G", "-6957A", "T6958C", "-6968G", "-6969T", "-6970C", "-6975C", "-6985A", "A6990T", "-6994A", "-6995G", "-6996A", "-6997G", "-6998T", "-6999C", "-7000A", "C7006T", "T7015C", "G7040A", "A7063G", "C7088A", "G7094A", "A7096C", "A7108T", "C7124T", "A7158G", "G7177A", "A7246T", "A7261T", "G7293A", "C7328A", "A7345T", "G7390A", "G7426A", "C7433T", "A7470G", "C7590A", "T7604A", "A7628C", "C7651A", "C7658G", "T7692A", "A7693G", "A7700G", "T7702G", "G7765A", "G7777A", "T7801A", "A7938G", "G8001A", "C8005T", "G8015T", "A8023G", "C8051A", "T8094C", "C8293T", "A8299T", "G8304C", "C8320T", "C8323T", "G8328A", "T8330A", "A8341G", "A8370T", "C8411T", "C8412G", "C8415A", "C8416G", "A8417G", "C8425A", "A8461G", "C8488G", "G8490T", "T8498C", "G8534A", "G8570A", "A8652C", "G8861A", "G8868A", "A8869C", "A8870C", "G8877C", "T8915C", "C8923G", "T8993C", "G8994A", "G9005A", "G9136A", "G9175C"], "INT": ["K127R", "Q137H", "G193R", "K219Q", "I268L", "K269R"], "RT-p51": ["T39A", "K102E", "K122E", "E204Q", "E207D", "K275R", "E312K", "V365I", "K395R", "E399D"], "RT-p66": ["T39A", "K102E", "K122E", "E204Q", "E207D", "K275R", "E312K", "V365I", "K395R", "E399D", "R461K", "K524E"], "gp120": ["-3N", "-5M", "L6-", "D29N", "A32T", "I56V", "H57L", "E74D", "-112I", "-115S", "-116L", "-117N", "-118D", "-119T", "-120Q", "-121E", "-122E", "E125-", "K127R", "M133V", "S160K", "N161G", "I166V", "S181T", "N201S", "K203E", "E204D", "N206K", "P210Q", "E240K", "E241K", "N261D", "K265R", "H302Y", "K307R", "A308T", "N312T", "Q320R", "K323E", "H324S", "F325L", "-326G", "K329H", "S336H", "T344I", "G361I", "-368D", "-372V", "-374T", "-379I", "-381E", "-382S", "V396I", "Q412K", "V414I", "E418D", "E464D", "R480K"], "gp41": ["L9I", "K56R", "T96N", "S101T", "N109H", "Q119E", "I130K", "N133E", "N166K", "H212R", "R233K", "V238L", "R334T", "R342K", "S343T"], "nef": ["I10L", "P24E", "P25R", "T28K", "H40R", "S49G", "A50S", "K104Q", "M173I", "E176T", "E179Q", "R188S", "T194R", "R196Q"], "p17": ["K18R", "L46I", "K69S", "Q90R", "I92L", "K95T", "I107M"], "p2": ["-12N"], "p24": ["V11T", "M15I", "V26A", "S41T", "H87Q"], "p6": ["S24P"], "p7": ["Q9R"], "pro": ["N37E", "K41R", "L63P", "F99L"], "rev": ["D7N", "E11G", "R14G", "A15V", "V16I", "I19V", "K20R", "R53C", "S56I", "I59V", "A68E"], "tat": ["E2D", "L8I", "K29A", "R53K", "T58S", "Q60R", "R62H", "H65R", "T77A"], "vif": ["K33R", "R63T", "D113K", "Q127H", "R130S", "R132I", "A137E", "T170A", "D172N", "T180I"], "vpr": ["H28Q", "Q44E", "E48N", "I63T", "A93S", "G94S"], "vpu": ["I20V", "F27V", "D40H", "M67I", "-69Y", "-70D", "-71I", "-72L", "D80N"]}, "labels": {"aa": "INT: K127R, Q137H, G193R, K219Q, I268L, K269R; RT-p51: T39A, K102E, K122E, E204Q, E207D, K275R, E312K, V365I, K395R, E399D; RT-p66: T39A, K102E, K122E, E204Q, E207D, K275R, E312K, V365I, K395R, E399D, R461K, K524E; gp120: -3N, -5M, L6-, D29N, A32T, I56V, H57L, E74D, -112I, -115S, -116L, -117N, -118D, -119T, -120Q, -121E, -122E, E125-, K127R, M133V, S160K, N161G, I166V, S181T, N201S, K203E, E204D, N206K, P210Q, E240K, E241K, N261D, K265R, H302Y, K307R, A308T, N312T, Q320R, K323E, H324S, F325L, -326G, K329H, S336H, T344I, G361I, -368D, -372V, -374T, -379I, -381E, -382S, V396I, Q412K, V414I, E418D, E464D, R480K; gp41: L9I, K56R, T96N, S101T, N109H, Q119E, I130K, N133E, N166K, H212R, R233K, V238L, R334T, R342K, S343T; nef: I10L, P24E, P25R, T28K, H40R, S49G, A50S, K104Q, M173I, E176T, E179Q, R188S, T194R, R196Q; p17: K18R, L46I, K69S, Q90R, I92L, K95T, I107M; p2: -12N; p24: V11T, M15I, V26A, S41T, H87Q; p6: S24P; p7: Q9R; pro: N37E, K41R, L63P, F99L; rev: D7N, E11G, R14G, A15V, V16I, I19V, K20R, R53C, S56I, I59V, A68E; tat: E2D, L8I, K29A, R53K, T58S, Q60R, R62H, H65R, T77A; vif: K33R, R63T, D113K, Q127H, R130S, R132I, A137E, T170A, D172N, T180I; vpr: H28Q, Q44E, E48N, I63T, A93S, G94S; vpu: I20V, F27V, D40H, M67I, -69Y, -70D, -71I, -72L, D80N"}}}, {"name": "AY371134", "node_attrs": {"div": 0.15636, "accession": "AY371134", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_0925MO"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A356G", "G386A", "G394A", "G407T", "C435T", "T506C", "G518A", "A521T", "A551T", "A562G", "A576G", "A579G", "A585G", "C586T", "C587T", "T596C", "C614G", "A615G", "A619G", "T641C", "A654G", "T655A", "C668T", "G671A", "A678G", "T695C", "C697G", "A708T", "A762G", "C768A", "G770T", "T771C", "C773T", "T789C", "G791A", "G806A", "A818G", "C917T", "G978C", "T979A", "G987A", "A1002T", "A1017C", "G1019A", "C1060A", "A1070G", "A1088G", "A1115G", "G1134A", "A1242G", "C1243T", "G1247A", "C1295T", "C1299T", "C1350A", "A1367G", "T1385C", "G1394A", "A1397G", "T1422C", "G1424A", "A1448G", "-1452G", "C1454A", "-1456G", "A1458-", "A1459-", "G1476A", "A1492C", "T1559C", "T1613C", "G1694A", "G1720A", "A1740-", "T1741-", "A1742-", "A1743-", "C1744-", "C1745-", "T1749-", "C1750-", "C1751-", "C1752-", "C1753-", "T1754-", "C1755-", "C1756-", "G1757-", "A1758-", "A1759-", "G1760-", "G1771A", "A1794G", "C1825A", "T1826A", "C1831T", "G1839A", "G1845A", "C1853T", "C1864T", "C1865T", "A1908G", "A1933G", "T1978C", "C1985A", "A2003C", "C2011T", "A2023G", "A2032G", "T2035C", "T2104C", "G2119A", "A2133G", "A2185G", "A2223G", "G2273A", "A2293G", "G2341A", "C2386A", "G2428A", "G2518A", "T2536C", "A2581T", "C2613T", "G2626A", "C2638T", "A2665G", "G2686A", "G2707T", "A2716G", "C2720T", "G2725A", "T2737A", "C2818T", "G2878A", "C2885T", "G2902A", "G2909C", "A2918C", "A2923G", "A2925G", "G2947A", "A2962G", "A3046C", "A3059G", "T3068C", "G3071A", "C3095G", "C3100T", "C3175T", "T3207C", "A3217G", "G3236A", "G3293A", "T3349C", "T3358C", "T3380C", "G3442C", "A3503C", "C3628T", "G3631A", "G3643A", "T3644A", "G3718A", "A3756G", "C3763T", "G3769A", "C3787A", "G3816A", "G3836A", "T3895C", "G3916A", "T3946C", "A3989G", "C4006T", "A4213G", "T4247C", "T4321C", "A4332G", "T4396C", "T4405C", "C4471T", "C4474A", "A4495G", "A4519G", "G4582A", "G4583C", "T4606C", "G4622A", "A4644G", "A4693C", "G4694A", "G4695A", "A4721C", "C4759T", "G4774A", "G4786A", "A4806C", "G4816A", "C4820A", "C4833A", "G4856A", "A4861G", "A4865C", "A4956T", "A4993C", "G5018T", "A5038G", "G5059A", "G5060A", "G5066A", "T5072C", "G5090A", "G5143A", "T5206C", "G5212A", "T5228C", "A5233C", "G5267C", "A5277T", "A5291G", "T5293A", "A5302G", "G5312A", "T5314A", "T5333C", "G5359C", "G5361A", "G5370A", "G5418A", "A5431G", "G5448A", 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"p2": ["-12G"], "p24": ["Q13N", "S14P", "V83Q", "V86I", "I91F", "M96L", "T110N", "V135I", "T171V", "S207T"], "p6": ["S14N", "I21-", "T22-", "S23-", "S24-", "P25-", "K27-", "R31K", "T39A", "P49Q", "S51L"], "p7": ["G4S", "Q9P"], "pro": ["L10I", "R14K", "G16E", "N37S", "L63I", "K69Q"], "rev": ["I18T", "A54T", "T62S", "A68T", "S86N", "D88S", "S92I", "V104G", "S112T"], "tat": ["T19A", "K29M", "P70S"], "vif": ["V7A", "T20A", "K36T", "D37N", "E45D", "P58L", "R63K", "R67K", "T74P", "R77K", "D78E", "H83N", "K92R", "R93S", "I124L", "Q136P", "K151R", "R158K", "S186N"], "vpr": ["E55Q", "E58V", "I63V", "V70I", "R85P", "G86R", "G89S"], "vpu": ["E5V", "A18V", "F27L", "M65L", "D78-", "N79-", "D80-", "N81D"]}, "labels": {"aa": "INT: R14K, A21T, I72V, K186R, D270H, G283S; RT-p51: K13R, K43R, V60I, T173I, E204D, F214L, A272P, K275Q, K277R, T322A, V326I, Q334E, V371A, V381I, A400T; RT-p66: K13R, K43R, V60I, T173I, E204D, F214L, A272P, K275Q, K277R, T322A, V326I, Q334E, V371A, V381I, A400T, E449D, T470P, L517I, N554S; gp120: -3G, V40I, N52S, H57Y, N64E, M67I, E78A, H104Q, -105D, -106Y, N111-, -123E, -124G, N128K, E136V, Y145E, A146S, V154I, Q155K, N158K, S159-, S160-, N161T, Y189F, E204G, N206S, T208K, P210T, E241D, I242V, N251D, A253G, T255N, K262E, K265Q, N272S, K277R, R280N, A291T, T292E, G293R, D294I, K307E, T313A, A318V, T319K, R322Q, K323N, -326T, N328-, I332N, N335R, S336P, L341I, F348L, G361Q, -368K, -372W, -374S, -375T, -376R, -377N, -379N, N383-, T385I, V402I, R416E, E418K, N432R, N433G, N434P, S435N, T439I, K462Q; gp41: K46R, R77K, T94N, T96R, N109E, D110S, K122R, N133S, A156E, N160S, D163S, T165S, T192N, I193V, A264V, A268T, T270V, L277N, W286G, K297R, I307V, I321V, G322A, G326C, R330L, I332T; nef: S8T, K15E, Q22R, P24Q, S46R, A83G, F85L, I101V, K105R, Q125D; p17: R20Q, M61I, E62D, K76R, T81A, I82V, T84V, D93E, I94V, K95R, I107E, T115A, A121G, S125C; p2: -12G; p24: Q13N, S14P, V83Q, V86I, I91F, M96L, T110N, V135I, T171V, S207T; p6: S14N, I21-, T22-, S23-, S24-, P25-, K27-, R31K, T39A, P49Q, S51L; p7: G4S, Q9P; pro: L10I, R14K, G16E, N37S, L63I, K69Q; rev: I18T, A54T, T62S, A68T, S86N, D88S, S92I, V104G, S112T; tat: T19A, K29M, P70S; vif: V7A, T20A, K36T, D37N, E45D, P58L, R63K, R67K, T74P, R77K, D78E, H83N, K92R, R93S, I124L, Q136P, K151R, R158K, S186N; vpr: E55Q, E58V, I63V, V70I, R85P, G86R, G89S; vpu: E5V, A18V, F27L, M65L, D78-, N79-, D80-, N81D"}}}]}, {"name": "CRF02_AG_NODE_0000014", "node_attrs": {"div": 0.10481, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A492T", "A541G", "A645G", "-711A", "-712G", "-713T", "A720-", "G721-", "C722-", "-1452C", "A1656C", "C1756A", "G1780A", "A2029G", "C2386T", "A2839C", "T2983G", "G3220A", "C3225T", "T3358C", "A3385G", "C3542T", "A3654T", "G4228A", "G5087A", "G5359C", "T5462A", "C5559T", "A5800T", "-5864G", "T6064C", "G6180A", "A6186T", "-6192A", "-6195C", "-6199T", "-6200A", "-6201G", "-6202C", "-6207A", "-6211T", "-6213T", "A6330G", "A6333G", "G6368A", "G6463A", "G6644A", "A6821G", "-6832T", "A6854G", "-6969G", "-6996G", "-6998G", "-7000A", "A7032G", "T7095A", "A7148G", "C7171T", "A7269G", "C7313A", "A7877G", "G8276A", "C8277T", "G8393A", "A8407G"], "RT-p51": ["E248D"], "RT-p66": ["E248D", "H483Y", "Q520L"], "gp120": ["-112T", "-115S", "S162N", "A172T", "V264I", "D294E", "K393R", "N432D", "H472R"], "gp41": ["T192A", "R276H", "A325I"], "nef": ["Q22R"], "p1": ["S9H"], "p17": ["T53S", "I104V"], "p2": ["S10P"], "p6": ["-26Q", "G34E"], "rev": ["A15V"], "vpr": ["R85P"], "vpu": ["-74D", "-75N", "-77L"]}, "labels": {"aa": "RT-p51: E248D; RT-p66: E248D, H483Y, Q520L; gp120: -112T, -115S, S162N, A172T, V264I, D294E, K393R, N432D, H472R; gp41: T192A, R276H, A325I; nef: Q22R; p1: S9H; p17: T53S, I104V; p2: S10P; p6: -26Q, G34E; rev: A15V; vpr: R85P; vpu: -74D, -75N, -77L"}}, "children": [{"name": "JF683758", "node_attrs": {"div": 0.1482, "accession": "JF683758", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CY"}, "date": {"value": 2007.0}, "Strain_name": {"value": "CY206"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "T362C", "A388G", "A425G", "C467T", "T473C", "A503C", "A508G", "A509C", "A534G", "A540G", "G542A", "T549A", "A569G", "G592A", "G593T", "A632G", "A654C", "G665A", "A730T", "G755A", "A762G", "G803A", "T852A", "A905C", "A914T", "A959G", "A968G", "T1102C", "T1181C", "T1253A", "G1271T", "T1329C", "C1330A", "C1331T", "T1334A", "G1339A", "T1344C", "A1361C", "A1400C", "G1404A", "A1448G", "C1454G", "-1455G", "-1456C", "-1457C", "C1490T", "G1495A", "C1514T", "A1529G", "A1588G", "T1613C", "G1661A", "G1664A", "A1673G", "A1697G", "G1720A", "T1741C", "-1746T", "-1747C", "-1748C", "T1754A", "A1758-", "A1759-", "G1760-", "A1762G", "A1784G", "C1825A", "T1826G", "A1907G", "A1988T", "T2158C", "A2197G", "G2215A", "A2241G", "G2389A", "A2482C", "A2524G", "A2566T", "T2644C", "A2665T", "G2677A", "A2842G", "T2854A", "G2869A", "T2917C", "C2941T", "G2947A", "C2960T", "C2976T", "G2980A", 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"G5939A", "C5998T", "T6021A", "T6085G", "A6132G", "G6133T", "C6148T", "A6157G", "-6164A", "-6165C", "-6166T", "-6167G", "-6169T", "-6170C", "-6171T", "-6172T", "-6173A", "-6174G", "-6175C", "-6177A", "-6189G", "C6193T", "-6196T", "-6197A", "-6198T", "-6203A", "-6204A", "-6205T", "-6206G", "-6208A", "-6210C", "-6212G", "-6214T", "-6215A", "-6216G", "-6217T", "-6218A", "-6219T", "-6220G", "A6229G", "A6232G", "C6247T", "T6252C", "G6253C", "T6263G", "C6278A", "A6279G", "T6285A", "T6307A", "T6315A", "C6317A", "G6336A", "G6345T", "A6374G", "G6392A", "G6401A", "A6402C", "G6403A", "C6427T", "G6451A", "G6464A", "A6465C", "G6466T", "C6469T", "A6471G", "A6489G", "G6490A", "C6545T", "A6576G", "G6577A", "C6591T", "A6605G", "A6616G", "A6635C", "T6637G", "A6648G", "A6668G", "A6716G", "A6734G", "T6735A", "A6744G", "C6758T", "G6774A", "A6776G", "A6781T", "A6788G", "C6797A", "A6800C", "C6810T", "A6818-", "G6819C", "G6820A", "G6823A", "C6826A", "T6827G", "-6833A", "-6835T", "G6871A", "A6880G", "C6885T", "A6886G", "C6951T", "-6956G", "-6957A", "-6968T", "-6970G", "C6973T", "A6986-", "A6987-", "T6988-", "A6989-", "A6990-", "C6991-", "A6992-", "C6993-", "-6994G", "-6995G", "-6997A", "-6999C", "A7002C", "G7004C", "C7006G", "A7007G", "T7009A", "A7020C", "C7064A", "A7108C", "A7133G", "A7151G", "A7152G", "A7155C", "A7157G", "T7159G", "G7181A", "G7182T", "G7198A", "C7250T", "T7255C", "G7256A", "T7270G", "G7289A", "A7290G", "G7291C", "A7297G", "G7317C", "G7322A", "A7399G", "A7439C", "A7459G", "T7462C", "C7463A", "A7470G", "A7492G", "A7594G", "A7628G", "G7631A", "A7632G", "C7633T", "A7641G", "C7655T", "G7677A", "A7706C", "G7709C", "G7720A", "A7722G", "G7729A", "A7744G", "C7747A", "A7820T", "G7846A", "G7868A", "G7873A", "C7936T", "C7939A", "A7989G", "C8005G", "G8017C", "A8023C", "T8028A", "A8029T", "G8030-", "C8031-", "A8032-", "T8035A", "C8037T", "G8050C", "C8056T", "C8062T", "C8065T", "T8094C", "G8134C", "G8135A", "G8137T", "G8141A", "A8170G", "T8200C", "A8208G", "C8220T", "A8254G", "C8311T", "T8348A", "C8369T", "T8371C", "C8382G", "A8386G", "A8414T", "A8429G", "C8445A", "T8456G", "T8470C", "A8474C"], "INT": ["S39C", "Y99L", "S119T", "K269R"], "RT-p51": ["K49R", "T294I", "T377I", "R390K", "V435L", "G436E"], "RT-p66": ["K49R", "T294I", "T377I", "R390K", "V435L", "G436E", "V467I", "E471G", "T477A", "D488E", "R512K", "E514D"], "gp120": ["N1K", "-5N", "D29N", "I56K", "H77Q", "K93S", "H104T", "-105D", "-106L", "-107S", "-109N", "-110S", "N113T", "-114I", "-116N", "-117E", "-118T", "-119V", "-120S", "-121M", "-123K", "-124G", "I126M", "M133T", "L137V", "Q142R", "V144E", "V154E", "Q155K", "R164M", "T174A", "V180I", "E183T", "E204T", "N206S", "K212R", "E241G", "S246F", "N251D", "N261Q", "K265R", "N272G", "T288A", "D297G", "H302Y", "E309D", "N312D", "Q315K", "K316Q", "T319I", "R322-", "T344M", "T366I", "-368D", "-372W", "N378-", "T380-", "Q389P", "Q404K", "E418D", "T427A", "N433G", "N434T", "S435E", "G443I", "V468I", "E479S"], "gp41": ["L4M", "G5A", "V7I", "K46Q", "L54M", "K56R", "N109D", "D110S", "D113G", "S125N", "I135L", "E136Q", "N140S", "D148E", "I173L", "A189T", "H212Q", "Q229R", "L242Y", "A243-", "A245V", "L277S", "G278S", "E280K", "N302S", "T306I"], "nef": ["I10T", "P14A", "K15R", "Q35K", "D38E", "I43T"], "p17": ["V7I", "K18R", "Q58R", "T67A", "K69G", "S72T", "W86Y", "I107L", "Y132F"], "p2": ["N11A", "-12N"], "p24": ["S41T", "I124T", "E180D", "S200H", "R203K", "G225S"], "p6": ["S14N", "I21T", "K27R", "Q28-", "P49Q"], "p7": ["R10K", "K41R"], "pro": ["L10V", "N37D", "I64L"], "rev": ["A8T", "P30S", "P31T", "R53G", "E57Q", "I59L", "T62S", "C63-", "A68P", "P70S", "P72S", "L73F", "G96Q", "V97L", "G98E", "I108V"], "tat": ["N12K", "L36M", "R54H", "T76I", "T77N"], "vif": ["R63M", "H110Y", "I124L", "V128I", "R132K", "T159N", "K167A", "T170A", "T180A"], "vpr": ["D7G", "E58R", "I63M"], "vpu": ["Q2K", "S3P", "V21I", "F27Y", "D58E", "M65L", "-73H", "-76L", "D80N", "N81D"]}, "labels": {"aa": "INT: S39C, Y99L, S119T, K269R; RT-p51: K49R, T294I, T377I, R390K, V435L, G436E; RT-p66: K49R, T294I, T377I, R390K, V435L, G436E, V467I, E471G, T477A, D488E, R512K, E514D; gp120: N1K, -5N, D29N, I56K, H77Q, K93S, H104T, -105D, -106L, -107S, -109N, -110S, N113T, -114I, -116N, -117E, -118T, -119V, -120S, -121M, -123K, -124G, I126M, M133T, L137V, Q142R, V144E, V154E, Q155K, R164M, T174A, V180I, E183T, E204T, N206S, K212R, E241G, S246F, N251D, N261Q, K265R, N272G, T288A, D297G, H302Y, E309D, N312D, Q315K, K316Q, T319I, R322-, T344M, T366I, -368D, -372W, N378-, T380-, Q389P, Q404K, E418D, T427A, N433G, N434T, S435E, G443I, V468I, E479S; gp41: L4M, G5A, V7I, K46Q, L54M, K56R, N109D, D110S, D113G, S125N, I135L, E136Q, N140S, D148E, I173L, A189T, H212Q, Q229R, L242Y, A243-, A245V, L277S, G278S, E280K, N302S, T306I; nef: I10T, P14A, K15R, Q35K, D38E, I43T; p17: V7I, K18R, Q58R, T67A, K69G, S72T, W86Y, I107L, Y132F; p2: N11A, -12N; p24: S41T, I124T, E180D, S200H, R203K, G225S; p6: S14N, I21T, K27R, Q28-, P49Q; p7: R10K, K41R; pro: L10V, N37D, I64L; rev: A8T, P30S, P31T, R53G, E57Q, I59L, T62S, C63-, A68P, P70S, P72S, L73F, G96Q, V97L, G98E, I108V; tat: N12K, L36M, R54H, T76I, T77N; vif: R63M, H110Y, I124L, V128I, R132K, T159N, K167A, T170A, T180A; vpr: D7G, E58R, I63M; vpu: Q2K, S3P, V21I, F27Y, D58E, M65L, -73H, -76L, D80N, N81D"}}}, {"name": "AJ251057", "node_attrs": {"div": 0.13984, "accession": "AJ251057", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "SN"}, "date": {"value": 1998.0}, "Strain_name": {"value": "98SE_MP1213"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C435T", "G608A", "G671A", "A699G", "G702A", "G703A", "A758G", "T763C", "T858C", "A887G", "A1073G", "C1136T", "A1241G", "A1250G", "G1265A", "T1403A", "G1430A", "G1443A", "T1481C", "C1571A", "T1574C", "A1607G", "C1721T", "T1722G", "A1743G", "C1752T", "G1771A", "C1775G", "A1819G", "G1829T", "C1833A", "G1848A", "G1859A", "G1862C", "G1871A", "G1883A", "G1901A", "G1964T", "A1990G", "G2008A", "A2018T", "A2023T", "G2058A", "G2065T", "T2071C", "A2073C", "G2074A", "G2119A", "A2122G", "A2125T", "A2154G", "A2188T", "A2194C", "C2199T", "T2323C", "A2405G", "T2443C", "G2473A", "T2488C", "G2498A", "A2505G", "A2515T", "T2542C", "G2567T", "G2579T", "C2589T", "A2612G", "G2704A", "C2720T", "A2746T", "A2788G", "G2902A", "A2962G", "G3071A", "A3097G", "A3142G", "A3151G", "C3178T", "A3192G", "A3200G", "T3219C", "A3226G", "A3279G", "G3293A", "A3367G", "G3379A", "T3399C", "A3406T", "G3448A", "A3802G", "G3816A", "A3964G", "A3989G", "A4120G", "C4138T", "C4182A", "G4262A", "G4263C", "G4264A", "C4474A", "A4475-", "T4476-", "C4487-", "G4616A", "G4694A", "A4696G", "T4697C", "A4725C", "G4726A", "A4814C", "C4826A", "G4855A", "A4861G", "G4864A", "C4977T", "A4993C", "T5027C", "A5051C", "C5056T", "A5057T", "C5062G", "A5063G", "G5090A", "A5112G", "A5161G", "A5173G", "A5178C", "T5188A", "T5203C", "T5209C", "A5277T", "A5284C", "A5290G", "A5305G", "G5312A", "T5319A", "T5356C", "C5384T", "C5425A", "C5466T", "A5564C", "T5568C", "A5621T", "T5731A", "A5787T", "T5788A", "T5789C", "T5791G", "C5792A", "C5793A", "A5794G", "C5795A", "T5796A", "C5797-", "T5798-", "T5799-", "A5804C", "G5805C", "T5807C", "G5808T", "G5809C", "G5810T", "G5811T", "-5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824T", "T5836C", "A5856G", "-5869G", "G5893A", "T5944C", "C6023A", "T6025G", "C6083A", "T6163-", "A6168-", "A6176-", "A6179C", "C6183A", "T6184C", "T6187C", "-6189C", "-6196C", "-6197T", "-6198C", "-6203G", "-6204G", "-6205C", "-6206A", "-6208C", "-6210A", "-6212A", "-6214A", "G6225A", "T6231C", "A6262C", "T6271C", "A6275G", "C6305A", "G6311A", "A6320T", "T6325G", "T6328C", "A6335G", "G6336T", "T6337G", "A6394G", "T6438A", "A6456G", "T6457G", "A6461G", "A6525G", "G6572A", "C6601T", "G6634T", "A6638C", "C6641T", "A6648C", "-6697T", "A6703-", "A6728G", "T6733A", "G6742A", "A6753G", "A6773G", "A6776T", "G6779A", "A6789G", "T6793C", "T6808C", "A6809C", "C6810A", "G6823T", "C6824A", "C6826T", "T6828A", "T6829C", "-6830T", "-6831T", "-6833C", "-6835G", "C6855A", "T6856C", "C6859A", "T6860C", "C6861A", "A6947G", "T6958-", "A6962G", "-6968A", "-6970C", "A6972G", "-6983T", "-6984C", "-6985A", "T6988C", "A6989C", "-6994A", "-6995T", "-6997G", "-6999T", "A7065G", "A7090G", "G7101A", "A7107T", "A7158G", "G7225A", "A7252G", "A7265T", "C7266A", "A7279G", "G7315A", "T7325C", "A7375G", "A7440G", "G7477A", "G7533A", "C7561T", "T7591A", "T7609C", "T7630G", "T7642C", "A7700G", "G7712C", "C7747T", "C7770A", "A7771C", "A7782G", "G7790A", "T7801A", "T7843G", "C7874A", "T7912C", "T7913C", "G7915A", "C7936A", "G7977A", "A7992G", "G7995A", "G8006A", "G8008A", "C8009A", "T8092A", "G8093C", "A8163G", "A8184G", "A8222G", "G8234A", "T8235C", "A8264C", "G8268T", "A8269G", "A8273G", "T8290C", "G8292T", "G8357T", "G8368T", "C8369A", "A8370G", "A8372G", "G8373-", "T8374-", "G8375-", "A8409G", "C8410G", "C8411A", "C8412G", "C8415G", "C8416G", "G8487T", "G8558A", "T8595G", "C8597G", "A8642G", "C8720T", "T8741A", "G8753A", "G8798C", "G8799A", "G8818A", "T8849C", "C8906G", "A8917C", "A8918T", "T8927C", "C8928A", "C8948T", "G8977A", "A8978C", "C8979A", "A8991G", "T9060A", "G9132A", "A9134-", "G9135A"], "INT": ["R14K", "I72V", "T136K", "G163T", "I234-", "P238-", "V281M"], "RT-p51": ["K20R", "T35I", "K104E", "V135I", "N137S", "A158S", "A162S", "T165I", "T173A", "V326I", "K366R", "T369A", "V375A", "T377M", "K395R", "A400T", "V435A"], "RT-p66": ["K20R", "T35I", "K104E", "V135I", "N137S", "A158S", "A162S", "T165I", "T173A", "V326I", "K366R", "T369A", "V375A", "T377M", "K395R", "A400T", "V435A"], "gp120": ["N1S", "-5K", "H57K", "H77N", "-109I", "-110T", "N113-", "-116S", "-117G", "-118N", "-119N", "-120I", "-121K", "-122E", "I126T", "E136D", "K141E", "L151I", "V153I", "I156F", "N157K", "N161V", "F195Y", "N201R", "K203E", "K224R", "E240K", "L260F", "K262Q", "P263S", "K265T", "N272S", "T292A", "Q300R", "K307G", "A308S", "E309K", "N312S", "T319Q", "K323D", "H324N", "F325Y", "-326F", "N327Q", "A334D", "N335K", "S336H", "S365G", "S370G", "-372S", "-373S", "-377S", "-379H", "-381W", "-382V", "Q404R", "R416K", "E418V", "T471Y"], "gp41": ["L4I", "F8L", "I24M", "K46R", "R77K", "N109K", "N133D", "E137Q", "A156D", "N160S", "D163N", "N166K", "L191I", "H211Q", "G225E", "D230G", "R231K", "V235I", "F263L", "A264L", "L277R", "N287S", "Q294R", "I307V", "V311T", "I321L", "G322V", "R324G", "R330L"], "nef": ["W5C", "S9I", "I10V", "V11-", "T23G", "P24A", "P25G", "F85V", "E152D", "V153I", "G159E", "K192T", "R196K"], "p17": ["K69R", "T122A", "G123K"], "p2": ["V7I"], "p24": ["V11T"], "p6": ["F15V", "T22A", "P25-", "R31K", "D32E", "N47S", "*50Y", "Q52K"], "pro": ["V11F", "T12K", "G17E", "E21K", "A22P", "D25N", "D29N", "E35K", "V56L", "I64M", "T74S", "R87Q", "M89I", "Q92P"], "rev": ["I18T", "P30T", "R53H", "A54K", "C82T"], "tat": ["P3L", "Q17K", "Q63P", "T76N"], "vif": ["V31I", "D37G", "R47Q", "E76D", "H80Q", "R90K", "K92R", "R93K", "P131S", "Q136P", "T157I", "T159R", "K176E", "H192R"], "vpr": ["Q3R", "E25A", "H28Q", "E58V", "V70I", "F72Y", "I84T"], "vpu": ["E5V", "L42I", "E60D", "L61T", "S62E", "T63E", "M65A", "E66T", "M67L", "G68M", "-70E", "-71M", "-72G", "-73Y", "-76I"]}, "labels": {"aa": "INT: R14K, I72V, T136K, G163T, I234-, P238-, V281M; RT-p51: K20R, T35I, K104E, V135I, N137S, A158S, A162S, T165I, T173A, V326I, K366R, T369A, V375A, T377M, K395R, A400T, V435A; RT-p66: K20R, T35I, K104E, V135I, N137S, A158S, A162S, T165I, T173A, V326I, K366R, T369A, V375A, T377M, K395R, A400T, V435A; gp120: N1S, -5K, H57K, H77N, -109I, -110T, N113-, -116S, -117G, -118N, -119N, -120I, -121K, -122E, I126T, E136D, K141E, L151I, V153I, I156F, N157K, N161V, F195Y, N201R, K203E, K224R, E240K, L260F, K262Q, P263S, K265T, N272S, T292A, Q300R, K307G, A308S, E309K, N312S, T319Q, K323D, H324N, F325Y, -326F, N327Q, A334D, N335K, S336H, S365G, S370G, -372S, -373S, -377S, -379H, -381W, -382V, Q404R, R416K, E418V, T471Y; gp41: L4I, F8L, I24M, K46R, R77K, N109K, N133D, E137Q, A156D, N160S, D163N, N166K, L191I, H211Q, G225E, D230G, R231K, V235I, F263L, A264L, L277R, N287S, Q294R, I307V, V311T, I321L, G322V, R324G, R330L; nef: W5C, S9I, I10V, V11-, T23G, P24A, P25G, F85V, E152D, V153I, G159E, K192T, R196K; p17: K69R, T122A, G123K; p2: V7I; p24: V11T; p6: F15V, T22A, P25-, R31K, D32E, N47S, *50Y, Q52K; pro: V11F, T12K, G17E, E21K, A22P, D25N, D29N, E35K, V56L, I64M, T74S, R87Q, M89I, Q92P; rev: I18T, P30T, R53H, A54K, C82T; tat: P3L, Q17K, Q63P, T76N; vif: V31I, D37G, R47Q, E76D, H80Q, R90K, K92R, R93K, P131S, Q136P, T157I, T159R, K176E, H192R; vpr: Q3R, E25A, H28Q, E58V, V70I, F72Y, I84T; vpu: E5V, L42I, E60D, L61T, S62E, T63E, M65A, E66T, M67L, G68M, -70E, -71M, -72G, -73Y, -76I"}}}]}]}]}, {"name": "CRF02_AG_NODE_0000015", "node_attrs": {"div": 0.09792000000000001, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A1459-", "G5827-", "A6226G", "T6838C", "G6936A", "A6971-", "A7089C", "A8414T"], "gp120": ["G361K", "Q412P", "E414V"], "vpu": ["N81D"]}, "labels": {"aa": "gp120: G361K, Q412P, E414V; vpu: N81D"}}, "children": [{"name": "CRF02_AG_NODE_0000016", "node_attrs": {"div": 0.10032, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T303-", "A585G", "C586T", "G1134A", "G5484A", "A6209-", "T6331-", "A6333-", "G6526A", "G6581A", "C6790A", "A6800C", "G6935A", "C6966-", "-6995G", "A7155C", "C7161A", "A8111G", "T8159G", "T8505A", "G8506T"], "gp120": ["V243M", "K316Q", "T371-"], "gp41": ["W286G"], "nef": ["I194R"], "p17": ["T84V"], "p2": ["N11S"], "p24": ["V83T", "V135I"], "rev": ["D88G", "V104G"], "tat": ["S23N"], "vpr": ["E58Q"]}, "labels": {"aa": "gp120: V243M, K316Q, T371-; gp41: W286G; nef: I194R; p17: T84V; p2: N11S; p24: V83T, V135I; rev: D88G, V104G; tat: S23N; vpr: E58Q"}}, "children": [{"name": "CRF02_AG_NODE_0000017", "node_attrs": {"div": 0.10761000000000001, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "T396C", "T979C", "G1173A", "T1174C", "G1265A", "T1329A", "-1455A", "-1457T", "A1461G", "C1706T", "T1724C", "C2263T", "G2273A", "G2683A", "G2909C", "G3398A", "G3766A", "G3808C", "G3925A", "A5094G", "G5146A", "T5188A", "G5276A", "T5357C", "G5418A", "G5444A", "C5496A", "A5564C", "G5729A", "T5731C", "-5827G", "-5869T", "T6184C", "-6189C", "-6196T", "-6198C", "-6201A", "-6206A", "-6219A", "A6288C", "G6336A", "A6339G", "A6595G", "A6636C", "A6682G", "G7004A", "C7024T", "A7120T", "A7162G", "A7189G", "G7533A", "T7642C", "G7657A", "A7693G", "A7706C", "A8011C", "T8243G", "G8255A", "G8276A", "C8277T", "C8323T", "A8424G", "C8425A", "C8440T", "G8666C", "T8711C", "A8917C", "C8928A"], "INT": ["E11D", "M50I"], "RT-p51": ["V60I", "A272P"], "RT-p66": ["V60I", "A272P"], "gp120": ["-114S", "-117N", "-124G", "Y145S", "N201K"], "gp41": ["I135L", "T270A", "W314G", "V318I", "A325I"], "nef": ["T28E", "A33V", "E108D", "K192T"], "p2": ["I13-"], "p24": ["E79D", "V148T"], "rev": ["I55L"], "tat": ["N40K", "Q63P"], "vif": ["T170A", "R187H"], "vpr": ["H28Q"], "vpu": ["R41K", "-69Y", "-70D", "-71N", "-72I", "-73L"]}, "labels": {"aa": "INT: E11D, M50I; RT-p51: V60I, A272P; RT-p66: V60I, A272P; gp120: -114S, -117N, -124G, Y145S, N201K; gp41: I135L, T270A, W314G, V318I, A325I; nef: T28E, A33V, E108D, K192T; p2: I13-; p24: E79D, V148T; rev: I55L; tat: N40K, Q63P; vif: T170A, R187H; vpr: H28Q; vpu: R41K, -69Y, -70D, -71N, -72I, -73L"}}, "children": [{"name": "MH078544", "node_attrs": {"div": 0.15069000000000002, "accession": "MH078544", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GW"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DE00214GW009"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T201G", "T377C", "G378A", "C379A", "A417G", "A418C", "G424A", "C435A", "A461G", "C471A", "A492T", "A500T", "A509G", "C513A", "A534G", "A562G", "A569G", "T602C", "C614A", "A618C", "A645T", "A653G", "A654G", "A759T", "T760G", "G803A", "G806A", "C830T", "G837A", "G866A", "A873G", 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"A3637G", "A3739G", "T3746C", "G3756A", "C3763T", "G3769A", "C3787T", "G3825C", "C3843T", "A3913G", "A3985G", "A4003G", "G4060A", "A4076C", "C4132T", "A4186G", "A4300G", "A4385C", "C4501T", "A4555G", "A4581G", "G4622A", "T4655C", "T4674C", "A4677G", "A4696G", "T4706C", "C4715T", "G4727A", "T4742C", "C4757T", "T4805G", "A4860G", "G4864A", "T4868C", "T4883C", "T4959A", "C4965G", "A4966G", "A4976C", "C5056G", "A5061C", "C5062A", "A5063G", "A5112G", "G5131A", "G5137A", "T5148A", "A5159G", "C5221T", "A5233G", "A5277G", "A5299G", "G5382T", "C5384T", "G5537A", "C5563T", "C5578T", "C5579T", "A5621C", "T5628A", "C5655T", "C5679T", "G5709A", "T5763C", "T5781A", "A5787T", "T5788A", "A5800C", "-5824T", "-5864G", "G5893A", "G5902A", "G5917T", "C5923T", "T5956C", "A5957T", "A6009G", "A6022G", "A6024C", "A6030G", "C6052T", "G6074A", "T6100C", "T6148C", "-6164A", "-6165T", "-6166C", "-6167T", "A6168C", "-6169T", "-6170A", "-6171T", "-6172C", "-6173G", "-6174A", "-6175G", "-6177A", "-6178C", "-6179T", "-6180C", "C6190T", "-6192C", "-6195A", "-6197T", "-6199T", "-6200G", "-6202T", "-6203A", "-6204G", "-6205G", "-6207A", "-6208C", "-6209A", "-6210T", "-6211A", "-6212C", "-6213C", "-6214T", "-6215A", "-6216A", "-6217T", "-6218G", "-6220T", "T6263C", "A6276G", "A6277G", "A6282G", "G6303A", "A6304G", "A6326G", "T6328A", "G6329A", "-6331C", "-6333A", "T6334C", "-6340T", "T6395A", "G6403A", "A6442G", "C6446A", "A6456G", "T6457A", "T6460A", "G6481A", "A6489G", "A6525G", "C6548T", "A6573G", "A6574G", "A6606G", "A6635G", "C6641T", "C6660T", "A6668G", "A6734G", "T6735A", "A6736C", "A6773G", "G6774A", "C6777G", "A6781C", "A6788G", "T6793C", "C6797A", "A6798G", "A6805G", "C6824T", "-6830A", "-6831G", "-6832G", "-6833A", "-6834A", "-6835T", "A6836G", "A6842G", "C6843A", "A6844C", "A6854G", "A6858G", "A6880G", "G6905A", "C6925T", "T6932A", "C6938T", "A6945G", "-6956G", "-6957C", "-6963A", "-6964T", "-6966C", "-6968T", "-6969T", "-6970G", "-6971G", "-6972G", "-6973T", "A6990G", "-6994T", "-6996A", "-6997G", "-6998G", "-6999A", "-7000T", "T7003C", "A7042G", "C7087T", "T7095A", "G7102T", "A7107T", "A7111G", "A7126T", "C7127T", "A7144T", "G7145A", "G7147T", "A7152G", "T7153G", "T7156A", "A7160G", "A7164C", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "G7232A", "G7256A", "C7264T", "C7267T", "A7275G", "A7279G", "G7322T", "G7390A", "A7531G", "A7573G", "C7590G", "C7597T", "C7603T", "T7604G", "A7628C", "C7633T", "C7655A", "A7701C", "G7720A", "A7721C", "G7726A", "A7734G", "G7765A", "T7774C", "G7831A", "A7858G", "A7877G", "A7882T", "A7887G", "T7888C", "T7913C", "C7917T", "A7935G", "G7957A", "G8019A", "G8050A", "G8110A", "G8141C", "C8146T", "G8158A", "A8188G", "T8218C", "A8222G", "C8242T", "G8268T", "A8271T", "C8291T", "C8293T", "G8330T", "C8331G", "C8336A", "T8337C", "G8387C", "G8421A", "A8435G", "A8469G", "G8490A", "T8498C", "G8499T", "A8505C", "T8507A", "C8510A", "A8531C", "G8558A", "G8561A", "T8568A", "A8576T", "T8595C", "T8600C", "C8676T", "A8829T", "A8844C", "T8847A", "A8870G", "C8873T", "A8904C", "A8922C", "T8923A", "T8993C", "T9012C", "T9029C", "C9068T", "C9078T", "C9097T", "A9128T", "A9134-", "G9135A"], "INT": ["S17T", "A23V", "I101L", "I204L", "K269R", "G283S"], "RT-p51": ["K20R", "K122E", "D123N", "A162T", "T173K", "K174E", "E203V", "E207D", "L210Q", "D250E", "S251D", "K277R", "K357R", "V381I", "K388R", "Y405H", "V435I"], "RT-p66": ["K20R", "K122E", "D123N", "A162T", "T173K", "K174E", "E203V", "E207D", "L210Q", "D250E", "S251D", "K277R", "K357R", "V381I", "K388R", "Y405H", "V435I", "A446S", "R461K", "V466I", "V467I", "S468T", "Q507H", "A508S", "S554N"], "gp120": ["-5N", "E21D", "T35S", "N52S", "I56M", "H57P", "E59G", "E74K", "T104I", "-105S", "-106I", "-107E", "-109S", "-110T", "-112T", "-115D", "-116R", "-118I", "-119P", "-120N", "-121D", "-122M", "-123Q", "K141R", "K143R", "R150K", "N158E", "S160N", "S181T", "L198I", "K201R", "D202E", "K212R", "K224R", "E240G", "N251S", "N261A", "P263S", "T269I", "N272G", "K307E", "T308R", "E309D", "N312E", "Q315R", "H324Y", "-326R", "N328D", "T330D", "N335S", "G351R", "S360T", "N364S", "-368A", "-370N", "-371S", "-372T", "-373S", "-374T", "-375E", "-376D", "-377N", "-379N", "N383-", "V414E", "R416S", "E418V", "G431E", "N432G", "N433S", "N435R", "V460I", "V468I", "K474R"], "gp41": ["V7F", "R77K", "T96S", "S101A", "N109H", "L118I", "I130M", "N133T", "N140H", "K144R", "M176I", "T192A", "N195S", "S205L", "H211R", "S239N", "E280Q", "I307V", "G322V", "Q323L", "R330C", "A343C", "L345T"], "nef": ["Q15N", "A27T", "I43V", "A50T", "A53S", "C55L", "E63D", "L76M", "F85L", "S163C", "I168L", "C169S", "R194Q"], "p17": ["A15K", "K28A", "R30K", "L34I", "L46I", "T53S", "E55D", "L60I", "T67A", "K76R", "D93E", "K95Q", "I104L", "I107V"], "p2": ["S10T", "-12V"], "p24": ["M10W", "V11I", "V36I", "T48A", "P92Q", "S120G", "N183G", "K199R", "S200N"], "p6": ["F15V", "T22A", "R31G"], "p7": ["R34K"], "pro": ["G17D", "E35D", "N37Q", "K70R"], "rev": ["A8T", "A37T", "A68T", "G88S", "G98A", "P100S", "G104R", "T114A"], "tat": ["E2D", "P3L", "K29I", "R54H", "P63S", "P68F", "T76A", "G83D"], "vif": ["Y30H", "I31V", "D37G", "H73Q", "K92E", "R93K", "L125I", "Q127G", "R130S", "T157R", "T159Q", "K176E", "G182D", "R184K", "S188T"], "vpr": ["Q3R", "F15Y", "T19A", "Q58R", "A93S"], "vpu": ["E5A", "D58E", "M65L", "D81N"]}, "labels": {"aa": "INT: S17T, A23V, I101L, I204L, K269R, G283S; RT-p51: K20R, K122E, D123N, A162T, T173K, K174E, E203V, E207D, L210Q, D250E, S251D, K277R, K357R, V381I, K388R, Y405H, V435I; RT-p66: K20R, K122E, D123N, A162T, T173K, K174E, E203V, E207D, L210Q, D250E, S251D, K277R, K357R, V381I, K388R, Y405H, V435I, A446S, R461K, V466I, V467I, S468T, Q507H, A508S, S554N; gp120: -5N, E21D, T35S, N52S, I56M, H57P, E59G, E74K, T104I, -105S, -106I, -107E, -109S, -110T, -112T, -115D, -116R, -118I, -119P, -120N, -121D, -122M, -123Q, K141R, K143R, R150K, N158E, S160N, S181T, L198I, K201R, D202E, K212R, K224R, E240G, N251S, N261A, P263S, T269I, N272G, K307E, T308R, E309D, N312E, Q315R, H324Y, -326R, N328D, T330D, N335S, G351R, S360T, N364S, -368A, -370N, -371S, -372T, -373S, -374T, -375E, -376D, -377N, -379N, N383-, V414E, R416S, E418V, G431E, N432G, N433S, N435R, V460I, V468I, K474R; gp41: V7F, R77K, T96S, S101A, N109H, L118I, I130M, N133T, N140H, K144R, M176I, T192A, N195S, S205L, H211R, S239N, E280Q, I307V, G322V, Q323L, R330C, A343C, L345T; nef: Q15N, A27T, I43V, A50T, A53S, C55L, E63D, L76M, F85L, S163C, I168L, C169S, R194Q; p17: A15K, K28A, R30K, L34I, L46I, T53S, E55D, L60I, T67A, K76R, D93E, K95Q, I104L, I107V; p2: S10T, -12V; p24: M10W, V11I, V36I, T48A, P92Q, S120G, N183G, K199R, S200N; p6: F15V, T22A, R31G; p7: R34K; pro: G17D, E35D, N37Q, K70R; rev: A8T, A37T, A68T, G88S, G98A, P100S, G104R, T114A; tat: E2D, P3L, K29I, R54H, P63S, P68F, T76A, G83D; vif: Y30H, I31V, D37G, H73Q, K92E, R93K, L125I, Q127G, R130S, T157R, T159Q, K176E, G182D, R184K, S188T; vpr: Q3R, F15Y, T19A, Q58R, A93S; vpu: E5A, D58E, M65L, D81N"}}}, {"name": "CRF02_AG_NODE_0000018", "node_attrs": {"div": 0.14386000000000002, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T117G", "A159-", "-167A", "A356G", "C482T", "A509C", "G518A", "A527G", "A540G", "A541G", "C558A", "C583T", "T596C", "A605G", "T646G", "G667A", "A670G", "A673G", "A674G", "A675C", "G706A", "-711A", "-712G", "-713T", "A762G", "A878G", "C897T", "G908A", "G932A", "A968C", "A1025G", "G1192A", "G1199A", "T1214C", "G1247A", "T1262C", "G1268A", "C1295T", "G1301A", "T1421C", "-1456A", "A1458-", "C1460-", "A1529G", "T1613C", "T1682C", "G1727A", "A1736G", "A1740G", "C1752T", "G1760T", "A1766G", "T1790G", "C1873T", "A1906T", "C1985T", "T1986C", "A2179G", "G2215A", "A2329G", "G2362A", "C2464A", "T2476C", "T2479G", "G2498A", "T2499A", "G2518A", "G2530A", "A2616G", "A2699G", "G2714A", "A2726C", "G2727A", "A2728C", "C2740T", "A2743C", "A2788G", "C2845T", "T2908C", "G2932A", "T2935C", "G3029C", "A3043G", "C3055T", "C3067T", "T3118A", "T3132A", "A3192G", "G3264A", "G3293A", "T3303C", 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"-75N", "D78-", "N79-"]}, "labels": {"aa": "INT: V32I, S57G, I60V, T218I, D288N; RT-p51: D123E, V135K, K174R, I202V, E207K, R211H, E312Q, F346Y, K366R, R390K, A400T, M403T, V435M; RT-p66: D123E, V135K, K174R, I202V, E207K, R211H, E312Q, F346Y, K366R, R390K, A400T, M403T, V435M, H483Y, S554T, K558R; gp120: N1S, -3N, E4-, D34Q, T35P, V37A, H57N, E78G, K89Q, T104H, -115S, -116S, -118S, -121M, S130T, E136L, S162Q, E240K, I242V, T250S, N251D, A253G, T255I, N261T, K265R, K277T, Q316E, N327-, T329K, A334K, N335E, S336H, L341V, I343V, I386L, Q389P, V396I, P412Q, V414I, R416K, E418N, N435-, T471S; gp41: L54M, K56R, R77Q, T96N, T107S, K122R, I130T, N166K, A189T, I193L, D217G, R233T, V264A, E272G, L274-, G275-, R276-, L277-, L288V, S290T, N302S, G326I; nef: V16I, I20M, Q22R, P24R, P25V, D38A, C55S, N157T, R196K; p17: Q58H, M61I, L75I, A83V, I104R, S111N, K112R, Q113R, K114Q, S124N; p2: Q8T, Q9N, S10V, S11-; p24: R154K; p6: I21V, -26N, K27-; pro: L63S; rev: A8P, E32G, Q51H, A68E, L83I, S92-, G93-, T94-, Q95-, S106C, I108S; tat: S7R, L8I, R54P, Q66K, T82A; vif: N22H, F39L, K92N, R93S, I124L, V128I, R132K, L150I, T155E, Q178R, T180I, S186N; vpr: P37V, H45Q, E48N, Q58I; vpu: I20L, V21I, T24S, D44E, -74F, -75N, D78-, N79-"}}, "children": [{"name": "MK177826", "node_attrs": {"div": 0.1587, "accession": "MK177826", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "ES"}, "date": {"value": 2012.0}, "Strain_name": {"value": "P3075"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G164A", "C200T", "C456T", "G687A", "-714C", "-715A", "-716A", "-717A", "-718T", "-719C", "T788A", "G791A", "C1060A", "G1078C", "A1089G", "C1098G", "A1134G", "A1142G", "C1342G", "A1442C", "-1452A", "G1553A", "G1562A", "A1657G", "G1848A", "A1903C", "A1920G", "A1990G", "T2087C", "A2194C", "G2224A", "A2512T", "C2533T", "A2557G", "C2694A", "C2806T", "T2873C", "T2968C", "A2975G", "C2976T", "A3019G", "C3100T", "G3188A", "G3206T", "T3577C", "A3685G", "G3816A", "C3826T", 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G116A, S120G, P123A, I135V, S200T, A204G; pro: G17E, E35D, K41R, I64M; rev: A15V, E68S, I102V; tat: C31V, L36I; vif: D37N, L39V, Q105H, K160R; vpr: I84T; vpu: Q2K, A8S"}}}, {"name": "CRF02_AG_NODE_0000019", "node_attrs": {"div": 0.1491, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A720-", "G721-", "C722-", "A1101G", "C1330A", "G1589A", "A1656C", "G1730A", "G1942A", "T2467C", "G2686A", "A2842G", "A3224T", "A3761G", "G4774T", "T5182C", "A5613-", "G5700A", "T5781A", "A5866-", "T5956G", "-6195G", "C6198G", "A6201G", "A6276C", "G6284A", "G6425A", "A6461G", "C6487T", "A6715G", "A6716T", "G6774A", "A6776G", "C6810A", "T6967-", "A6989-", "A6990-", "C6991-", "T7150-", "G7162-", "G7199A", "G7244A", "A7399G", "C7433T", "C7596A", "G7790A", "A7837G", "T8038G", "C8051A", "G8216A", "T8223C", "C8291T", "G8329A", "G8570A", "A8806C", "T8849C"], "RT-p66": ["I556V"], "gp120": ["N102D", "K141T", "V144M", "A191T", "K203E", "T308A", "T319K", "N378-", "T380-", "D449N", 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"G79R"], "vif": ["R63I", "R67K", "R90K", "S93N", "S95N", "V166I"], "vpr": ["H40Y", "N48D"], "vpu": ["Q2H", "E5Q", "A19G", "R47I", "F74H", "N75I"]}, "labels": {"aa": "INT: I32V, V60I, A124T; RT-p51: T39P, R174K, D324E, V375A, T377L, T386I; RT-p66: T39P, R174K, D324E, V375A, T377L, T386I, D511E; gp120: N3D, -5K, D19E, Q54R, N66D, G78E, Q89K, -109Y, -110N, -112T, N117S, -119N, -120S, -122E, -123I, I126V, N128E, K143R, N157D, N158S, N161S, V180T, E204K, P210L, E239G, E247K, K262E, T269I, N272T, T277K, T288S, Y290H, D294A, N312R, T313A, E316K, K323N, V341A, K361Q, -368N, -381E, -382D, -384T, P389T, I395F, I414E, N432K, N434T, -435E, T436S, K462E, H472P; gp41: V2A, G3L, L4-, Q32K, Q39H, P98Q, N109D, D113G, D129E, T130K, N133E, E137K, D163S, T165S, L191F, R214K, L242F, A243S, A245V, A267V, G272R, L304F, D305N, I307T, A310V, R330C; nef: E15A, A26R, G29R, Q35R, F85V, K105Q, F120Y, V146E, A156N, R178K, E179D, R188K, T192K, R194M; p17: K28Q, T53S, I61L, K69R, T70A, V83A, N111D; p2: V7A, T8Q, N9Q, V10-, -11A, -12N, -13V; p24: G225S; p6: M17V, P49Q, Q52*; p7: R34K; pro: L10I; rev: E10A, P30S, G32E, A54E, L55I, S61L, G90E, S108N; tat: Y26F, K66Q, T76I, G79R; vif: R63I, R67K, R90K, S93N, S95N, V166I; vpr: H40Y, N48D; vpu: Q2H, E5Q, A19G, R47I, F74H, N75I"}}}]}]}]}, {"name": "CRF02_AG_NODE_0000020", "node_attrs": {"div": 0.10626000000000001, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T206G", "T763C", "T771A", "C772A", "A914G", "G1022A", "T1181C", "G1694A", "C1752T", "T3068C", "A3217G", "G4622A", "G4727A", "C4757T", "A4778G", "G4782A", "G4856A", "A4861G", "G4923A", "G4949A", "G5018T", "C5221T", "T5333C", "A5830G", "A5848G", "G5872A", "T5964C", "T6007C", "A6009G", "T6155C", "T6187-", "A6221-", "A6222-", "A6223-", "G6225-", "G6226-", "A6229-", "G6290T", "A6442G", "G6550A", "T6551C", "G6712A", "C6810A", "T6932A", "G6940A", "A6965-", "T6967-", "A7160G", "A7231G", "A7238C", "C7313A", "T7702G", "C7878A", "G7918A", "A8104-", "C8112-", "T8153C", 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V235I, R261K, F263L, A267L, A268G, R269H, T270S, V271S, E272L, L273R, L274G, G275L, A281V, Y284H, G286W, S290A, R327G, A343S; nef: Q15K, V16I, T23A, P24T, T28I, A33V, D38G, R39K, S46R, C55M, W57R, F85L, Y102H; p1: S9N; p17: K12R, K28Q, G49S, T53S, M61I, T67A, K76Q, V84T, Q90K; p24: S14N, S41T, T83M, I91N, N183R, A217S; p6: S14N, F15L, S23-, S24P, P25S, -26L, K27R, R31G; p7: Q9H, R34K; pro: T12A, I15V, E35K, K41Q, K70R; rev: A8P, A15I, I18T, P30S, R38Q, K39R, R53H, A54S, C82S, C85-, C86-, E87-, G88-, C89-, G90-, T91-, G104V, I108S, T114I; tat: P3L, L36Y, R54P, G57R, S61N, T76I, K85E; vif: N3S, I31S, K36N, F39V, R47K, H48N, K50R, I57V, D61G, R63I, R67T, R77K, H80Q, R90K, R92G, R93S, H110R, K122Q, L153I, T159I, K167R, R187H; vpr: H28R, P37T, H45Y, R85Q, G94S; vpu: E5D, V21I, T24S, F27L, -69V, -70N, D78-, N79-"}}}, {"name": "CRF02_AG_NODE_0000021", "node_attrs": {"div": 0.11124, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A215-", "A216-", "A217-", "A356G", "C513A", "A579G", "G592A", "G593T", "C614T", "A720-", "G721-", "C722-", "G803A", "A1145G", "G1972A", "A2002G", "C2011T", "A2023G", "G2119A", "A2191G", "G2341A", "T2369C", "A2581T", "C2635T", "G3379A", "C3391A", "C3394A", "G5359C", "G6086A", "T6181C", "T6184-", "A6185-", "A6188-", "A6191-", "C6193-", "A6194-", "T6263C", "G6303A", "G6346A", "A6448G", "A6668G", "G6774A", "C6824T", "-6833A", "A6962-", "-6984C", "-6985A", "-6994A", "A7700G", "A8154T", "A8184G", "G8292T", "C8366T", "A8636T", "G8732A"], "RT-p51": ["D432E"], "RT-p66": ["D432E"], "gp120": ["E78T", "R150K", "N328-", "N369-"], "gp41": ["D129E", "N133D", "T270G", "Y284L", "R330L"], "p17": ["L60I", "I82V", "W86Y"], "vpr": ["R85P"]}, "labels": {"aa": "RT-p51: D432E; RT-p66: D432E; gp120: E78T, R150K, N328-, N369-; gp41: D129E, N133D, T270G, Y284L, R330L; p17: L60I, I82V, W86Y; vpr: R85P"}}, "children": [{"name": "CRF02_AG_NODE_0000022", "node_attrs": {"div": 0.11608, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C539A", "A541G", "T571A", "C1005G", "C1136T", "-1459A", "G1567A", "T1724G", "G2215A", "G2509A", "C2828A", "A2974G", "G3010A", "G3016A", "A3385G", "G4366A", "T4670C", "C4679A", "T4682C", "C4898T", "C4914T", "A5094G", "C5162T", "A5277T", "C5351T", "C5491T", "G5668A", "-5869T", "A6044G", "-6169T", "-6170G", "-6340G", "T6457G", "-6975C", "-6980G", "A6989G", "A7164C", "T7165C", "C7678T", "A8029C", "-8104T", "-8112G", "C8311T", "C8320T", "A8385C", "G8555A", "A8917G", "C9073T"], "gp120": ["N64D", "N161S", "N201K", "-382T", "-384D", "P412Q", "N435S"], "gp41": ["L242F", "Q294R"], "p2": ["S11-"], "p7": ["R34K"], "rev": ["A68E"], "tat": ["N23S"], "vif": ["H110Y"], "vpr": ["Q58V"], "vpu": ["V21I"]}, "labels": {"aa": "gp120: N64D, N161S, N201K, -382T, -384D, P412Q, N435S; gp41: L242F, Q294R; p2: S11-; p7: R34K; rev: A68E; tat: N23S; vif: H110Y; vpr: Q58V; vpu: V21I"}}, "children": [{"name": "MK086113", "node_attrs": {"div": 0.16549, "accession": "MK086113", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "LB095_1"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C471G", "G495T", "C496G", "A521G", "T525A", "T531C", "A534G", "C537A", "A566G", "T614A", "A620G", "C623T", "A659G", "T662A", "A664G", "A669C", "G683A", "A692C", "-711A", "-712G", "-713T", "A730T", "A758G", "A772G", "G785A", "T789C", "G806A", "T852A", "G914A", "G956A", "C974T", "G977A", "A978G", "T1003A", "G1019A", "C1040T", "G1078C", "C1181A", "G1265C", "A1277G", "G1313A", "T1329A", "C1330G", "T1335C", "T1421C", "C1453-", "C1454-", "-1455A", "-1456C", "-1457T", "C1460T", "C1478T", "T1481C", "A1492G", "T1511C", "C1514T", "G1553A", "C1598T", "A1643G", "T1646C", "G1664A", "C1706T", "T1723G", "A1743C", "T1749C", "C1767T", "G1771C", "A1794G", "G1845A", "A1962G", "T1996A", "A2007G", "A2050C", "G2191A", "A2203G", "C2263T", "G2273A", "C2281T", "C2353T", "T2393C", "G2456C", "A2459G", 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"A6728G", "C6729T", "G6732A", "A6734G", "A6749C", "A6751G", "T6760C", "A6765C", "G6771A", "A6773G", "A6774G", "A6775C", "T6787G", "A6788G", "A6791G", "T6794G", "C6800A", "C6807T", "A6810C", "C6812A", "A6818G", "A6822T", "A6825C", "-6830C", "-6831A", "-6832G", "-6834A", "-6835T", "A6836G", "A6837C", "C6843A", "A6854G", "T6860G", "T6875A", "G6894C", "C6951T", "-6956A", "-6957G", "T6961G", "-6962A", "-6963A", "-6964T", "-6965A", "-6966G", "-6967T", "-6968G", "-6969G", "-6970G", "-6971A", "-6972G", "-6973T", "-6974A", "-6976A", "-6977A", "-6978A", "-6979T", "-6981G", "-6982G", "-6983A", "A6994T", "G6995-", "A7001-", "A7002-", "T7003-", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "G7033A", "A7044G", "T7045A", "T7075C", "C7089G", "G7094A", "T7095A", "A7096C", "G7101C", "A7107G", "C7124T", "G7146A", "G7147T", "A7148C", "A7152G", "A7154C", "T7156C", "C7165A", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "G7190A", "G7197A", "T7222C", "G7244A", "C7250T", "T7270G", 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"G8798A", "G8814A", "G8822A", "T8831C", "G8868A", "A8870G", "G8871-", "A8904G", "T8913A", "T8914G", "C8934A", "T8935A", "G8936A", "G9005A", "G9030T"], "INT": ["E11D", "I101L", "K156R"], "RT-p51": ["V60I", "D121H", "K122E", "D123S", "T131P", "V135I", "A158S", "R211K", "Q245K", "K357R"], "RT-p66": ["V60I", "D121H", "K122E", "D123S", "T131P", "V135I", "A158S", "R211K", "Q245K", "K357R"], "gp120": ["-3G", "E4N", "D34S", "H57Y", "D64E", "M76I", "T78N", "N102S", "-105D", "-106A", "-107F", "-109D", "-110T", "N111D", "-112T", "-113A", "E125-", "K127-", "S130T", "F131Y", "R138L", "Y145H", "Q155P", "I156M", "N159K", "S160T", "-162H", "K201R", "D202E", "E240G", "E241D", "I242V", "T250S", "N251D", "P271V", "N272G", "S278G", "V279-", "R280-", "I281-", "G284-", "P285-", "G286-", "Q287-", "T288-", "F289-", "Y290V", "A291H", "T292I", "D294P", "N304T", "S306N", "K307G", "N311K", "K312E", "T313A", "L314V", "Q316K", "A318V", "Q320K", "R322G", "K323M", "H324S", "-326Q", "-328A", "T330K", "S336A", "L341I", 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"M67L", "N79L", "D81F"]}, "labels": {"aa": "INT: E11D, I101L, K156R; RT-p51: V60I, D121H, K122E, D123S, T131P, V135I, A158S, R211K, Q245K, K357R; RT-p66: V60I, D121H, K122E, D123S, T131P, V135I, A158S, R211K, Q245K, K357R; gp120: -3G, E4N, D34S, H57Y, D64E, M76I, T78N, N102S, -105D, -106A, -107F, -109D, -110T, N111D, -112T, -113A, E125-, K127-, S130T, F131Y, R138L, Y145H, Q155P, I156M, N159K, S160T, -162H, K201R, D202E, E240G, E241D, I242V, T250S, N251D, P271V, N272G, S278G, V279-, R280-, I281-, G284-, P285-, G286-, Q287-, T288-, F289-, Y290V, A291H, T292I, D294P, N304T, S306N, K307G, N311K, K312E, T313A, L314V, Q316K, A318V, Q320K, R322G, K323M, H324S, -326Q, -328A, T330K, S336A, L341I, S347T, T366I, -370S, -371K, -372N, -373S, -374G, -375N, -376W, N378S, -379T, T380N, E381G, N397R, Q412R, V414N, R416T, E418G, N432G, N433A, N434H, T436P, D446N, R448K, E464K, H472Q; gp41: M4L, I24L, K46R, L76T, T96S, S102T, T107S, D113A, S125N, D133Q, K154N, D163S, M176I, V178I, G180S, F188C, I194V, S239N, A245I, S251N, L265W, A267V, L284F, V311T, A312G, A325F, G326V, L340A, L345N; nef: I10L, Q15R, R17L, I20-; p1: S9N; p17: R43F, F44A, L64I, S66L; p2: Q8T, Q9N, S10-; p24: S41T; p6: F15W, T22P, S23P, P30S, R31T, T39A; p7: Q9R; pro: G16E, K55R, K70R; rev: A15V, I18T, I52V, S61R, C63Y, T102I, I108V, S112P; tat: P3L, Q17K, K29I, N40K, Q63E, P81Q, S87*; vif: I31T, K36R, N113K, E134D; vpr: V58I; vpu: V13I, I17L, K35R, A50T, D58E, M67L, N79L, D81F"}}}, {"name": "CRF02_AG_NODE_0000023", "node_attrs": {"div": 0.12354, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G214-", "A464G", "A759T", "T760G", "T979C", "T1253A", "-1452T", "C1541T", "T1613C", "A1657G", "A1918G", "A2131G", "C2694A", "G2702C", "T2968G", "A3059G", "C3140T", "G3398A", "A3403G", "G3667A", "G4244C", "C4501T", "T4537C", "A4622G", "G4774T", "A4923G", "C4943T", "A5005G", "T5448A", "G5700A", "-5824T", "-5827G", "G5830A", "A5872G", "C5974T", "T5992C", "C6007T", "G6009A", "A6087C", "G6121A", 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S146A, L151P, N159D, N261K, K262E, K265R, D294E, I332N, -379D, N437T, Q462K, H472R; gp41: R77K, F188L, I193V, N302S; nef: S45N, A50S, C55I; p17: K69R, F79Y; p24: M10W, S14N, P92A; rev: T62A, S67P, L73F, C82R; tat: N24K; vif: N37K, N113D, T170A"}}, "children": [{"name": "CRF02_AG_NODE_0000024", "node_attrs": {"div": 0.12742, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C435A", "-720A", "-721G", "-722C", "A803G", "T1646C", "A2194G", "A4423G", "T4441A", "C4682A", "T4703C", "C4820A", "G5059A", "T5314C", "T5688C", "C5769T", "G5784A", "-5864G", "G6029A", "-6164A", "-6165C", "-6166C", "-6167T", "-6171T", "-6172C", "-6173A", "-6177A", "-6178C", "-6187C", "-6191A", "-6197A", "-6199T", "-6200G", "-6202C", "-6222A", "-6225A", "G6284A", "T6287C", "A6323G", "A6605G", "A6712G", "A6789C", "-6974A", "-6976T", "-6979C", "-6982C", "-6983T", "G7712C", "G7717A", "C8005A", "G8030T", "T8223C", "G8476A", "G8490T", "G8537A"], "INT": ["N222K"], "gp120": ["E59K", "-105S", "-106V", "-110T", "V144M", "Y145H", "H324-", "N327-"], "gp41": ["E137Q", "A243S", "I307T"], "p17": ["L34I"], "rev": ["R53S"], "vif": ["D78E", "R158K"]}, "labels": {"aa": "INT: N222K; gp120: E59K, -105S, -106V, -110T, V144M, Y145H, H324-, N327-; gp41: E137Q, A243S, I307T; p17: L34I; rev: R53S; vif: D78E, R158K"}}, "children": [{"name": "AY371130", "node_attrs": {"div": 0.1555, "accession": "AY371130", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CM_2348SA"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A399C", "A410G", "A419C", "G542A", "A557G", "A571T", "A708G", "T759A", "G760T", "C763T", "G770A", "A967G", "A1074G", "A1142C", "C1181T", "A1259G", "T1329G", "G1339A", "C1350A", "G1424A", "T1484C", "C1490T", "C1498T", "A1499G", "G1657A", "G1720A", "G1724T", "C1756T", "G1757A", "G1771A", "T1796C", "A1907G", "A1912C", "A1966G", "A1969G", "C1985A", "A2012G", "A2140G", "A2210G", 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"C7633A", "T7642G", "A7689G", "C7933T", "G7980A", "C7984A", "G7995A", "A8014G", "G8019A", "C8029T", "C8038A", "G8050A", "C8063A", "C8149T", "C8165T", "T8320C", "A8323C", "A8326G", "G8329A", "A8370T", "A8424C", "A8429G", "G8436A", "A8461G", "G8499A", "G8532A", "G8534T", "G8554C", "A8555T", "G8570A", "T8600C", "G8717A"], "INT": ["V32I", "K160Q", "K219N", "A265V", "D286G"], "RT-p51": ["T39A", "A162C", "T173R", "I178M", "Q245K", "V261I", "K366R", "E432D"], "RT-p66": ["T39A", "A162C", "T173R", "I178M", "Q245K", "V261I", "K366R", "E432D", "T450N", "S468T", "L503I", "S554N"], "gp120": ["N1S", "-5N", "H57D", "D64E", "T78I", "-107N", "-109S", "-112N", "-113I", "-114T", "-115S", "-116G", "-117M", "-118Q", "-119E", "S130T", "M133V", "L137I", "-162Q", "E204K", "N206E", "P210L", "K212H", "I244V", "N251D", "T255I", "R265G", "V279I", "H302Y", "S306N", "E309K", "K312T", "T319E", "R322-", "K323-", "F325-", "T329K", "T330I", "N332S", "S365-", "T366-", "W367-", "-374T", "-375A", "-376S", "S377L", "D384G", "Q389P", "R401K", "N433-", "S435R", "T436S"], "gp41": ["G5A", "L9F", "L54M", "K56R", "T107N", "D110E", "D113E", "E129G", "G226D", "R231K", "S239N", "L254I", "L288F"], "nef": ["I10L", "T28P", "A32T", "H40R", "A53T", "E64N", "R71T", "E98D"], "p1": ["S9N"], "p17": ["K28N", "Y79F", "S125G"], "p2": ["-11N"], "p24": ["W10M", "T11I", "E79G", "I115V", "S200A", "R203K", "P207T"], "p6": ["S14N", "P25L", "R31K"], "p7": ["T11M"], "pro": ["N37D", "L38F", "L63I", "I72V"], "rev": ["K20N", "Y23N", "P29S", "S56G", "S61F", "L64M", "E68T", "P72H", "Q101*", "S106F"], "tat": ["K24T", "G42A", "N67Y", "V69E", "P75L"], "vif": ["M16V", "R19K", "H27Y", "K36G", "R63I", "I66V", "I124L"], "vpr": ["I63L", "P85R"], "vpu": ["S3P", "K32E", "T63N", "D78-", "N79-", "D80-", "D81-"]}, "labels": {"aa": "INT: V32I, K160Q, K219N, A265V, D286G; RT-p51: T39A, A162C, T173R, I178M, Q245K, V261I, K366R, E432D; RT-p66: T39A, A162C, T173R, I178M, Q245K, V261I, K366R, E432D, T450N, S468T, L503I, S554N; gp120: N1S, -5N, H57D, D64E, T78I, -107N, -109S, -112N, -113I, -114T, -115S, -116G, -117M, -118Q, -119E, S130T, M133V, L137I, -162Q, E204K, N206E, P210L, K212H, I244V, N251D, T255I, R265G, V279I, H302Y, S306N, E309K, K312T, T319E, R322-, K323-, F325-, T329K, T330I, N332S, S365-, T366-, W367-, -374T, -375A, -376S, S377L, D384G, Q389P, R401K, N433-, S435R, T436S; gp41: G5A, L9F, L54M, K56R, T107N, D110E, D113E, E129G, G226D, R231K, S239N, L254I, L288F; nef: I10L, T28P, A32T, H40R, A53T, E64N, R71T, E98D; p1: S9N; p17: K28N, Y79F, S125G; p2: -11N; p24: W10M, T11I, E79G, I115V, S200A, R203K, P207T; p6: S14N, P25L, R31K; p7: T11M; pro: N37D, L38F, L63I, I72V; rev: K20N, Y23N, P29S, S56G, S61F, L64M, E68T, P72H, Q101*, S106F; tat: K24T, G42A, N67Y, V69E, P75L; vif: M16V, R19K, H27Y, K36G, R63I, I66V, I124L; vpr: I63L, P85R; vpu: S3P, K32E, T63N, D78-, N79-, D80-, D81-"}}}, {"name": "MT349408", "node_attrs": {"div": 0.16620000000000001, "accession": "MT349408", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10CMLB088"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C173T", "T174C", "T176A", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "G196-", "G197-", "A198-", "C199-", "C200-", "T201-", "G202-", "A203-", "A204-", "G205-", "G206-", "C207-", "G208-", "C213G", "C218-", "C219-", "A220-", "G221-", "A222-", "G223-", "A224-", "A225-", "G226-", "C227-", "C233G", "C245G", "C252T", "C287T", "-303A", "C471G", "C496G", "A521G", "T531C", "G579A", "A592T", "A704G", "G709A", "-711A", "-712G", "-713C", "-714C", "-715A", "-716A", "-717G", "-718G", "-719C", "C773T", "G776A", "G837A", "A873G", "A891G", "A903G", "G920A", "G956A", "A968C", "C974T", "G987C", "T988C", "G1016A", "C1103T", "A1115C", "T1262C", "G1265A", "C1322T", "T1325C", "T1409C", "T1427C", "A1459G", "C1514T", "C1517T", "C1571A", "T1616A", "T1628G", "G1661A", "A1673G", "G1685A", "A1712G", "T1722C", "A1743G", "T1749G", "G1780A", "A1784G", "G1846A", "G1848A", "T1888C", "A1908G", "A1920G", "A1951G", "C1960T", "A1966T", "T1986C", "T2011C", "A2026G", "T2062C", "G2111A", "A2293G", "C2386T", "A2459G", "C2596T", "G2626C", "A2641G", "G2683A", "T2737G", "A2764G", "A2825G", "A2829C", "A2842G", "A2875G", "C2930T", "G2932A", "A2959T", "A3010G", "G3071A", "A3103G", "A3142G", "G3221A", "A3268G", "A3302C", "T3349C", "G3403A", "C3415T", "G3442A", "C3449T", "A3487G", "T3566C", "A3578G", "C3589T", "A3601G", "T3602C", "A3619G", "G3630A", "T3644A", "C3649T", "C3682A", "G3718A", "T3754C", "C3787T", "G3808C", "G3846A", "T3850A", "T3976C", "A4000G", "C4021T", "G4063C", "A4189G", "T4198C", "A4300G", "T4396A", "G4409C", "A4430G", "A4475G", "A4492G", "T4501C", "T4543C", "A4564G", "G4636A", "G4694A", "A4696G", "A4717T", "G4723C", "T4724C", "T4774C", "T4805G", "G4855A", "A4862G", "A4949G", "G4953A", "G4975T", "C5062G", "G5140A", "T5162C", "G5179T", "A5227G", "T5228A", "T5239G", "T5260C", "G5276A", "T5351A", "C5384T", "T5391A", "C5454T", "A5461G", "A5463G", "C5487T", "T5490C", "T5492G", "G5493A", "A5495C", "C5496A", "A5498G", "C5536T", "G5537C", "G5561A", "T5568C", "G5594A", "A5602T", "A5621C", "A5712G", "G5729A", "G5730A", "T5739G", "T5763C", "A5787T", "T5788A", "T5789C", "T5791-", "C5792-", "C5793-", "A5794-", "C5795-", "T5796-", "C5797-", "T5798-", "T5799-", "A5800G", "T5801A", "A5806T", "G5809T", "G5810C", "G5811T", "-5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5830G", "-5861A", "-5862A", "-5863T", "T5869G", "C5923T", "A6015G", "A6022G", "A6024C", "G6028A", "T6046C", "G6079A", "C6110G", "A6124G", "G6133A", "T6148C", "-6174G", "-6175G", "-6179G", "-6180T", "-6184T", "-6185G", "-6188C", "-6189G", "-6192A", "-6193C", "-6194G", "-6195T", "-6196C", "-6198C", "-6201A", "-6203C", "-6204G", "-6205C", "-6206A", "-6207G", "-6208A", "-6209A", "-6210T", "-6211A", "-6212A", "-6213T", "-6214G", "-6215T", "-6216A", "-6217T", "-6218G", "-6219A", "-6220T", "-6221A", "G6260A", "A6261T", "A6275G", "C6278A", "T6301C", "C6306T", "A6326C", "T6328G", "-6331T", "-6333A", "G6336C", "T6337-", "C6338A", "A6339G", "G6340T", "G6451A", "C6523T", "A6525G", "A6532G", "C6563T", "G6575A", "A6578G", "C6607T", "G6631A", "A6636C", "G6640T", "G6648A", "A6684C", "G6693C", "A6714G", "A6716G", "T6735A", "C6808T", "A6810T", "T6824-", "A6825-", "C6826T", "-6830G", "-6831G", "-6832A", "A6833-", "A6836-", "C6840A", "C6855A", "A6858G", "G6871A", "T6875G", "G6894C", "A6913G", "C6949T", "-6956T", "-6957A", "-6962A", "-6963G", "-6964T", "-6965A", "-6966C", "-6967T", "-6968T", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6977A", "-6978T", "-6981A", "A6987G", "A6990T", "G6995A", "-6998T", "-7000C", "A7002G", "G7004A", "C7008A", "A7044G", "T7045G", "A7057G", "T7095A", "A7107T", "A7138G", "G7147A", "A7152G", "A7162G", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "A7189G", "G7225A", "C7264T", "C7320T", "G7322T", "T7325C", "A7373T", "G7426A", "A7440G", "G7477T", "A7532C", "C7597T", "C7623G", "A7660G", "A7673G", "T7678A", "C7690A", "T7702G", "C7703T", "A7711G", "G7720A", "G7773A", "G7790A", "A7807T", "G7846A", "A7918G", "C7936T", "A8023C", "C8051A", "T8065C", "T8091G", "T8094G", "C8156T", "T8167C", "G8184A", "A8219G", "G8231A", "A8273G", "A8275G", "C8277T", "C8321T", "C8342T", "T8348G", "G8375A", "G8388A", "T8390C", "A8402G", "A8407G", "C8412G", "C8413G", "T8414A", "C8415G", "C8425T", "T8456C", "G8458A", "T8480C", "T8507G", "T8511C", "G8516A", "A8525G", "A8531C", "A8540G", "C8552T", "A8564G", "T8568C", "T8595C", "T8596A", "T8636A", "A8643G", "T8646C", "A8652C", "A8693T", "T8701A", "A8739G", "T8789G", "A8807G", "T8831C", "A8834G", "A8844G", "G8882A", "A8904C", "G8915T", "G8917C", "C8921T", "T8923C", "A8924C", "A8950T", "C8957T", "G8977A", "A8978C", "C8979A", "C8990T", "A9023C", "A9042C", "G9049A", "C9068T", "C9075T", "A9082G", "C9083T"], "INT": ["E11D", "S24N", "D25E", "E96D", "D207E", "E212Q", "K219E", "I234V"], "RT-p51": ["E6K", "K122E", "E177D", "F214L", "I244V", "Q245T", "V326I", "A376T", "M403L"], "RT-p66": ["E6K", "K122E", "E177D", "F214L", "I244V", "Q245T", "V326I", "A376T", "M403L", "S491P", "I495V", "R512K", "L517I", "D529E"], "gp120": ["-3N", "-5K", "Q54R", "I56M", "H57P", "Q86E", "-107R", "-109V", "N111D", "-112R", "-113N", "-114V", "-115T", "-116D", "-117R", "-118R", "-120I", "-121M", "-122Y", "-123D", "-124N", "E136I", "K141E", "Q142K", "P151L", "N157D", "N158Q", "S160N", "S161T"], "gp41": ["A6V", "V7F", "F8L", "I24L", "K46R", "K77Q", "T107S", "I124V", "S125R", "D133E", "S157N", "D163N", "F263C", "V264G", "R294Q", "T306A", "A310T", "R324G", "A325V"], "nef": ["V16I", "I20M", "Q22R", "P24R", "P25A", "T28I", "R39K", "I55M", "W57R", "E63D", "F85H", "I101V", "Y102H", "K104Q", "F120Y", "T133V", "D149E", "I168V", "K192T", "R194T", "Y203F"], "p17": ["L46V", "A54G", "S66P", "V82I", "Y86F", "S125N", "-126S", "-127Q", "-128R"], "p2": ["-11S"], "p24": ["M15I", "V36I", "T48A", "M54V", "I58V", "E79D", "V86P", "E128D"], "p6": ["F15L", "T22A", "S23A", "G34E"], "pro": ["G17E", "N37S", "K41R", "L63P"], "rev": ["A8P", "V16I", "I18T", "P30S", "I59L", "S61L", "F73L", "S103F", "S107P"], "tat": ["P3L", "D5E", "K29V"], "vif": ["R17K", "K37G", "Y44F", "S46T", "R63T", "H73Q", "R90K", "E117D", "A123T", "R130I", "N140S", "T159R", "G185E"], "vpr": ["E25D", "L42I", "H45Q", "V58I", "S96T"], "vpu": ["E5A", "R41K", "D44E", "-69Y", "-70D", "-71D", "-72I", "-73L"]}, "labels": {"aa": "INT: E11D, S24N, D25E, E96D, D207E, E212Q, K219E, I234V; RT-p51: E6K, K122E, E177D, F214L, I244V, Q245T, V326I, A376T, M403L; RT-p66: E6K, K122E, E177D, F214L, I244V, Q245T, V326I, A376T, M403L, S491P, I495V, R512K, L517I, D529E; gp120: -3N, -5K, Q54R, I56M, H57P, Q86E, -107R, -109V, N111D, -112R, -113N, -114V, -115T, -116D, -117R, -118R, -120I, -121M, -122Y, -123D, -124N, E136I, K141E, Q142K, P151L, N157D, N158Q, S160N, S161T; gp41: A6V, V7F, F8L, I24L, K46R, K77Q, T107S, I124V, S125R, D133E, S157N, D163N, F263C, V264G, R294Q, T306A, A310T, R324G, A325V; nef: V16I, I20M, Q22R, P24R, P25A, T28I, R39K, I55M, W57R, E63D, F85H, I101V, Y102H, K104Q, F120Y, T133V, D149E, I168V, K192T, R194T, Y203F; p17: L46V, A54G, S66P, V82I, Y86F, S125N, -126S, -127Q, -128R; p2: -11S; p24: M15I, V36I, T48A, M54V, I58V, E79D, V86P, E128D; p6: F15L, T22A, S23A, G34E; pro: G17E, N37S, K41R, L63P; rev: A8P, V16I, I18T, P30S, I59L, S61L, F73L, S103F, S107P; tat: P3L, D5E, K29V; vif: R17K, K37G, Y44F, S46T, R63T, H73Q, R90K, E117D, A123T, R130I, N140S, T159R, G185E; vpr: E25D, L42I, H45Q, V58I, S96T; vpu: E5A, R41K, D44E, -69Y, -70D, -71D, -72I, -73L"}}}]}, {"name": "CRF02_AG_NODE_0000025", "node_attrs": {"div": 0.12808, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T662G", "G911A", "G1145A", "T1166C", "A1349G", "C1873T", "G2002A", "A2006G", "A3165G", "C3542T", "T3551C", "G3641C", "G3664A", "A4130C", "G4145A", "G5146A", "C5538A", "C5679T", "T5781G", "-5815G", "-5816A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5964T", "C6183-", "-6219A", "T6337C", "A6346G", "G6448A", "A6776G", "T6849A", "C6855A", "A6935G", "A6936G", "G7147A", "C8009A", "A8130G", "C8440T"], "RT-p51": ["F214L", "K357R"], "RT-p66": ["F214L", "K357R", "E516Q"], "gp120": ["A37V", "F189Y", "T308A", "A334N", "K361G"], "gp41": ["E129D"], "p17": ["N109K"], "p24": ["M15I"], "p6": ["F15L"], "pro": ["K70E"], "rev": ["A54E"], "vif": ["N140S", "R187H"], "vpu": ["D58E"]}, "labels": {"aa": "RT-p51: F214L, K357R; RT-p66: F214L, K357R, E516Q; gp120: A37V, F189Y, T308A, A334N, K361G; gp41: E129D; p17: N109K; p24: M15I; p6: F15L; pro: K70E; rev: A54E; vif: N140S, R187H; vpu: D58E"}}, "children": [{"name": "MN153495", "node_attrs": {"div": 0.16806, "accession": "MN153495", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2008.0}, "Strain_name": {"value": "08CMNYU1003"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G205A", "C213T", "-214T", "A353G", "G386A", "C471G", "A494T", "C496G", "G518A", "G541A", "A576G", "T614G", "A676G", "-720A", "-721G", "-722C", "T734C", "G776A", "G791A", "G806A", "C827T", "C830T", "T885C", "A968T", "C974T", "A1002G", "A1070G", "T1094C", "T1100C", "C1181A", "C1209T", "T1238C", "G1328A", "T1329A", "C1330A", "A1340G", "C1406T", "T1422C", "T1439C", "T1452A", "A1502T", "C1535T", "G1568A", "T1628G", "A1642G", "G1726A", "T1729A", "C1745-", "T1749-", "C1750-", "C1751-", "T1752-", "C1753-", "T1754-", "C1755-", "C1756-", "G1757-", "A1758-", "A1759-", "G1760-", "C1761-", "A1762-", "A1841G", "G1848A", "A1867C", "A1903C", "A1907G", "A1920G", "T1986C", "T2035C", "A2241G", "A2293G", "C2335T", "A2392C", "A2437C", "T2449C", "T2458C", "T2476C", "A2515G", "T2542C", "A2625G", "A2662G", "G2686A", "A2699G", "C2720T", "G2727A", "T2737A", "A2828C", "G2830A", "A2838T", "G2909C", "C2942A", "G2947A", 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"I202V", "R211K", "E248V", "A272P", "L283I", "A286T", "T294P", "A322T", "L325I", "M403L", "A446S", "L469I", "H483Y", "S491P", "N519S", "I521V", "K524E", "E527K", "K530R"], "gp120": ["-3Q", "E4Q", "D29N", "D64N", "N102T", "C103E", "N108-", "N111-", "-124G", "D139N", "K141N", "V153L", "D159S", "S160W", "S161-", "A172V", "S181T", "P184A", "I185H", "K201N", "E241G", "I242V", "M243V", "T250S", "K261S", "E262T", "T275A", "S278R", "I281M", "-282G", "-283I", "G293D", "E294I", "E309D", "Q320K", "K323E", "H324Y", "-326G", "-328G", "N335K", "G351A", "-368R", "E381I", "T382V", "R401T", "V414I", "R416K", "N433H", "S435K", "R472T", "K474R"], "gp41": ["F8L", "H53Q", "K56R", "I84L", "N109K", "D110E", "K122R", "D129S", "K144R", "Q147K", "N160T", "T165S", "K172R", "G183S", "E215D", "P219H", "I222T", "F242L", "F263L", "V264I", "L274V", "R276G", "L277R", "S290L", "I329F"], "nef": ["I10L", "I20M", "Q22R"], "p1": ["K4R"], "p17": ["L46V", "A54G", "M61I", "R69K", "T81A", "D93E", "K114R"], "p2": ["Q8T", "Q9N", "S10-"], "p24": ["E79D", "I91V", "P160S", "S200N"], "p6": ["G16E", "M17K", "S23-", "S24-", "P25-", "K27-", "Q28-"], "pro": ["I15V", "G17E", "E35D", "N37D", "K41R", "L63P"], "rev": ["A8N", "A15I", "V16A", "I18T", "T34S", "E57Q", "L64V", "E68T", "R82N", "D84N", "T91A", "S92C", "T94R", "I108T", "S112Q"], "tat": ["R54Q", "S61N", "N80I", "P84T", "S87P"], "vif": ["I31V", "S32T", "K37G", "Y44F", "V51T", "V65I", "R90K", "R92G", "I98V", "D101E", "L109V", "Y110H", "D113N", "E117D", "R130I", "T159A", "N190S"], "vpr": ["H28Q", "V58E", "V70I"], "vpu": ["S3P", "T24S", "F27G", "T63K", "-69Y", "-70D", "-71N", "-72I", "-73L", "N79I"]}, "labels": {"aa": "INT: E11D, S24N, I72V, S119P, A124T, K160Q, T218S, I220L, Y227F, D286N; RT-p51: K49R, E177G, I202V, R211K, E248V, A272P, L283I, A286T, T294P, A322T, L325I, M403L; RT-p66: K49R, E177G, I202V, R211K, E248V, A272P, L283I, A286T, T294P, A322T, L325I, M403L, A446S, L469I, H483Y, S491P, N519S, I521V, K524E, E527K, K530R; gp120: -3Q, E4Q, D29N, D64N, N102T, C103E, N108-, N111-, -124G, D139N, K141N, V153L, D159S, S160W, S161-, A172V, S181T, P184A, I185H, K201N, E241G, I242V, M243V, T250S, K261S, E262T, T275A, S278R, I281M, -282G, -283I, G293D, E294I, E309D, Q320K, K323E, H324Y, -326G, -328G, N335K, G351A, -368R, E381I, T382V, R401T, V414I, R416K, N433H, S435K, R472T, K474R; gp41: F8L, H53Q, K56R, I84L, N109K, D110E, K122R, D129S, K144R, Q147K, N160T, T165S, K172R, G183S, E215D, P219H, I222T, F242L, F263L, V264I, L274V, R276G, L277R, S290L, I329F; nef: I10L, I20M, Q22R; p1: K4R; p17: L46V, A54G, M61I, R69K, T81A, D93E, K114R; p2: Q8T, Q9N, S10-; p24: E79D, I91V, P160S, S200N; p6: G16E, M17K, S23-, S24-, P25-, K27-, Q28-; pro: I15V, G17E, E35D, N37D, K41R, L63P; rev: A8N, A15I, V16A, I18T, T34S, E57Q, L64V, E68T, R82N, D84N, T91A, S92C, T94R, I108T, S112Q; tat: R54Q, S61N, N80I, P84T, S87P; vif: I31V, S32T, K37G, Y44F, V51T, V65I, R90K, R92G, I98V, D101E, L109V, Y110H, D113N, E117D, R130I, T159A, N190S; vpr: H28Q, V58E, V70I; vpu: S3P, T24S, F27G, T63K, -69Y, -70D, -71N, -72I, -73L, N79I"}}}, {"name": "JF683795", "node_attrs": {"div": 0.16078, "accession": "JF683795", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CY"}, "date": {"value": 2009.0}, "Strain_name": {"value": "CY252"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C435T", "A461G", "G495T", "-711A", "-712G", "-713T", "A774G", "T788C", "T858C", "G866C", "A881G", "T892C", "A986C", "C1040T", "A1115G", "T1262C", "A1278G", "A1279G", "G1302A", "T1303C", "G1394A", "A1448T", "G1508A", "A1538G", "C1550T", "G1586A", "T1628A", "T1679C", "A1770G", "A2004G", "T2011C", "T2013C", "G2155A", "C2211A", "T2296C", "A2459G", "G2462A", "G2498A", "A2519G", "A2599G", "A2656G", "A2665G", "A2698G", "G2710A", "G2725A", "T2735C", "T2770C", "C2806T", "T2863C", "C2885T", "C2953T", "A2969G", "C3055T", "G3071A", "A3193G", "G3205T", "C3222T", "A3268G", "T3358C", "C3376T", "A3398G", "G3490A", "T3497A", "A3543G", "T3602C", "G3630A", "G3686A", "A3772C", "T3820C", "T3847C", "A3931C", "T3967C", "C3995T", "C4021T", "T4039A", "C4047A", "A4057G", "A4064G", "G4109A", "C4123T", "C4132T", "C4146G", "C4216T", "A4423T", "G4459A", "G4531A", "A4567G", "A4577C", "A4581G", "G4622A", "G4636T", "C4665T", "T4678G", "G4695A", "T4697A", "T4757C", "A4775G", "A4784T", "T4799C", "T4805G", "C4902A", "G4913A", "C4925T", "C4937G", "T4943C", "G4975C", "G4982T", "A4993C", "A5007C", "A5015G", "C5034A", "G5036A", "A5049G", "A5086G", "G5094A", "G5128A", "G5140A", "G5143A", "T5239G", "C5359G", "G5382T", "G5385A", "G5437C", "A5494G", "G5499A", "C5539A", "G5543A", "C5560G", "G5566A", "G5594A", "T5616C", "A5668G", "T5686C", "A5760G", "T5796C", "-5812C", "-5813A", "-5814T", "-5817T", "T5826C", "A5843G", "G5845-", "A5846-", "T5847-", "G5848-", "A5849-", "T5850-", "-5861A", "A5866C", "G5907A", "G5917C", "C5992T", "A6022G", "A6066G", "A6086G", "C6116T", "A6120T", "T6142A", "T6154C", "-6164G", "-6165G", "-6166C", "-6167C", "-6171T", "-6172C", "-6173A", "-6174A", 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E240K, A253I, T255N, N272G, Q300K, V305I, E309A, Q316E, T319Q, R322G, -326T, T329K, N332K, N335S, T360S, -368D, -369N, -370S, -371T, -372W, -373N, -374T, -375T, -376A, S377-, D379Y, T382S, N383S, T385N, V402A, M406I, Q412P, N433D, N434S, T437E, E481G; gp41: M4L, L54M, T96N, N109D, D110S, D113G, L118M, D121E, I130L, D133T, K144Q, S157N, E224G, G225E, D230G, V264A, L277S, A281F, R334V, A343S; nef: Q15K, A27S, T28R, A33V, D38G; p17: A54S; p2: Q8H, -11N; p24: I15V, E45D, M54T, N183G, V191T; p6: R31G; pro: K69R, I72T; rev: A8E, E10K, S61R, A62T, P67S, P72S, S99I, T102A; tat: E2D, A21P, K29I, N40D, R56Q, R62G, D64N; vif: R17M, H27Y, I31R, R63M, H73Q, L106M, R130T, R132S, Q136P, K141Q, L150I, T155A, K167R, A170T, R181K, G185E, S186N; vpr: H45Q, P85R, A93S, G94S; vpu: I21V, F27L, -69H, D81S"}}}]}]}]}, {"name": "CRF02_AG_NODE_0000026", "node_attrs": {"div": 0.11520000000000001, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C200T", "C227A", "A656G", 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"A267L", "A268G", "R269H", "G270S", "V271S", "E272L", "L273K", "L274G", "G275L", "Q294R", "I307T", "V318I", "I319L", "R334T"], "nef": ["Q15K", "E18D", "H40R", "S45I", "S46N", "A50N", "D54A", "Q61A", "A83G", "E98D"], "p1": ["S9N"], "p17": ["T53S", "M61I", "T67V", "L75I", "A83V", "Y86L", "Q90K", "I104L", "T122A", "S125C"], "p2": ["V7A"], "p24": ["A6V", "S14N", "M15L", "H87R", "I91L", "I124V", "T178S", "E180D", "S200T", "G225S"], "p6": ["P25L", "R31G", "D32N", "G34E"], "pro": ["R14K", "G16E", "K43R", "K69R", "I72T"], "rev": ["A15V", "R17K", "Q51H", "A54E", "T62A", "C63S", "A68E", "C82-", "L83-", "D84-", "C85-", "C86-", "E87-", "G88-", "G90I", "T91N"], "tat": ["N24K", "Q63E", "V69I", "P73S"], "vif": ["M16K", "R19K", "N37D", "V65I", "D78E", "R93K", "H110Y", "K122Q", "T159A", "K160R", "*193W"], "vpr": ["P85R"], "vpu": ["Q2R", "S3P"]}, "labels": {"aa": "INT: S39N, I72V, V112I, N134D, I208L, K269R, D286E, D288N; RT-p51: T7A, E36D, T39A, D123E, I180V, R211K, L310I, R358G, T377R, V435M; RT-p66: T7A, E36D, T39A, D123E, I180V, R211K, L310I, R358G, T377R, V435M, A446S; gp120: -3T, E4D, -5K, D34K, Q54R, N64K, N71K, T78E, K93Q, N102-, C103-, T104-, N108-, -126W, K127I, S130-, F131-, N132-, M133-, T134-, T135-, E136-, L137-, R138-, D139-, K140-, K141-, Q142-, K143-, V144-, Y145-, S146-, L147-, F148-, Y149-, K150-, L151-, D152-, I153-, V154-, Q155-, I156-, N157-, N158-, N159-, S160-, N161-, Y163-, R164-, L165-, I166-, N167-, C168-, F189Y, N201K, E204D, P210L, K212R, E241N, M243V, I244V, N251D, A253V, T255N, N261K, K262E, N272G, K277T, V279T, V305I, T308A, T319E, H324S, -326P, T329K, N335K, L341I, T366S, -368N, -369V, -370N, -371D, -372S, -373S, -379S, -382S, -384E, L388I, I392V, V396I, Q404K, R416S, E418N, N420S, N432Q, N433T, N435D, N437K, D446N, R448K, K474R; gp41: F8L, L9F, G13A, H53Q, K56R, K90R, T96N, D113G, S125N, D133Q, N166S, T208I, R231K, R233T, S239N, S251N, A267L, A268G, R269H, G270S, V271S, E272L, L273K, L274G, G275L, Q294R, I307T, V318I, I319L, R334T; nef: Q15K, E18D, H40R, S45I, S46N, A50N, D54A, Q61A, A83G, E98D; p1: S9N; p17: T53S, M61I, T67V, L75I, A83V, Y86L, Q90K, I104L, T122A, S125C; p2: V7A; p24: A6V, S14N, M15L, H87R, I91L, I124V, T178S, E180D, S200T, G225S; p6: P25L, R31G, D32N, G34E; pro: R14K, G16E, K43R, K69R, I72T; rev: A15V, R17K, Q51H, A54E, T62A, C63S, A68E, C82-, L83-, D84-, C85-, C86-, E87-, G88-, G90I, T91N; tat: N24K, Q63E, V69I, P73S; vif: M16K, R19K, N37D, V65I, D78E, R93K, H110Y, K122Q, T159A, K160R, *193W; vpr: P85R; vpu: Q2R, S3P"}}}, {"name": "CRF02_AG_NODE_0000027", "node_attrs": {"div": 0.11919, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T531C", "A678G", "C697G", "A1115C", "T1613C", "A1743C", "C1831T", "A2007G", "A2962G", "A3046C", "A3059G", "C3175T", "A3403G", "A3768G", "C4471T", "C4474A", "A4664G", "A4677G", "G4694A", "A5463G", "A5748G", "-5827T", "A5833C", "A5856G", "A6087T", "A6318C", "-6340T", "A6420T", "A6716G", "A7044G", "C7155A", "C7250A", "C7433T", "A7440G", "A7594G", "T7801A", "A8323C", "C8597G", "G8666A", "G9005A", "A9128G"], "RT-p51": ["T322A"], "RT-p66": ["T322A", "K558R"], "gp120": ["Q155P", "-162S", "T288A", "N397R", "L466I"], "gp41": ["M4I"], "p17": ["S66P", "T115A"], "p24": ["T83L", "E128D"], "p6": ["T22P", "S51L"], "vif": ["I31V"]}, "labels": {"aa": "RT-p51: T322A; RT-p66: T322A, K558R; gp120: Q155P, -162S, T288A, N397R, L466I; gp41: M4I; p17: S66P, T115A; p24: T83L, E128D; p6: T22P, S51L; vif: I31V"}}, "children": [{"name": "CRF02_AG_NODE_0000028", "node_attrs": {"div": 0.12964, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "C435A", "C539A", "A704C", "A705T", "A772G", "C1005G", "C1136T", "T1253A", "-1458A", "-1459G", "-1460C", "C1478T", "G1586A", "A1657G", "G1771A", "A1794G", "G1852A", "G2362A", "A2406G", "T2440C", "A2459G", "A2463G", "A2515G", "A2764G", "A2896G", "A2925G", "A2929G", "A3292G", "A3385G", "C3682T", "G3718A", "A4189G", "T4444C", "C4569T", "C4679T", "G4695A", "T4738C", "C4898T", "A5277C", "C5351T", "G5403A", "A5621T", "C5727T", "-5824A", "A6044G", "T6046A", "C6101T", "-6166T", "-6173A", "-6174A", "-6175C", "-6176A", "-6177T", "-6178C", "-6179A", "-6180C", "-6182A", "-6187C", "-6188A", "-6196T", "-6200A", "-6201A", "-6202C", "-6203A", "-6204T", "-6205G", "-6209A", "-6211G", "-6226G", "T6328A", "G6329A", "-6331T", "-6333G", "G6336A", "T6460A", "T6637A", "A6723C", "C6777A", "-6834A", "-6835G", "A6932T", "A6935G", "-6980G", "-6981A", "A7010C", "T7045A", "A7057G", "C7089A", "T7095A", "C7124T", "A7161C", "A7296G", "G7366A", "A7420G", "G7608C", "T7692C", "C7703T", "A7807G", "C8005A", "A8011C", "A8029C", "C8147A", "G8184A", "A8222G", "G8234A", "G8335A", "A8385C", "A8435G", "A8531C"], "INT": ["A265V"], "RT-p51": ["K104R", "K122E", "K277R"], "RT-p66": ["K104R", "K122E", "K277R"], "gp120": ["N64E", "-113N", "-114M", "D202E", "N261K", "N272G", "T308K", "K312T", "-326K", "-328T", "T329-", "T360S", "K361E", "I386-", "P412Q", "V414E", "E481G"], "gp41": ["K46R", "H53Q", "S102T", "I130T", "L242F", "L282I", "I307V", "V311I", "L340F"], "nef": ["E63D", "E98D"], "p17": ["L34I", "A121G", "S124C", "S129-"], "p24": ["P92A"], "p6": ["R31K", "T39A"], "rev": ["R53S", "I55L", "S61R", "P100H"], "tat": ["K29V"], "vif": ["V51A"], "vpr": ["Q58T"], "vpu": ["E5V"]}, "labels": {"aa": "INT: A265V; RT-p51: K104R, K122E, K277R; RT-p66: K104R, K122E, K277R; gp120: N64E, -113N, -114M, D202E, N261K, N272G, T308K, K312T, -326K, -328T, T329-, T360S, K361E, I386-, P412Q, V414E, E481G; gp41: K46R, H53Q, S102T, I130T, L242F, L282I, I307V, V311I, L340F; nef: E63D, E98D; p17: L34I, A121G, S124C, S129-; p24: P92A; p6: R31K, T39A; rev: R53S, I55L, S61R, P100H; tat: K29V; vif: V51A; vpr: Q58T; vpu: E5V"}}, "children": [{"name": "AY371138", "node_attrs": {"div": 0.15491, "accession": "AY371138", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_1475MV"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A417C", "G455A", "C471G", "A512G", "A534G", "C537T", "A541G", "A566C", "A609T", "T789C", "A803G", "G806A", "A842C", "A869G", "G870T", "C871G", "A978C", "T992A", "A1025G", "C1061A", "A1074G", "G1078C", "A1089G", "C1115T", "A1242G", "G1271T", "C1322T", "T1325C", "A1343C", "A1350T", "G1355A", "T1439C", "T1628A", "G1664A", "A1694G", "C1711T", "C1767T", "C1853T", "A1899C", "A1930G", "G2007A", "T2080C", "A2108G", "A2140G", "A2214C", "A2231C", "T2296C", "G2473A", "G2548A", "T2597C", "A2615G", "A2616C", "G2632A", "G2693A", "C2720T", "A2794G", "C2857T", "A2884G", "C2976T", "C2978T", "G3221A", "G3250A", "C3271T", "A3302C", "T3310C", "G3340A", "A3388G", "A3391C", "T3644A", "G3737A", "A3748G", "T4039C", "C4288A", "G4294A", "T4396C", "A4399G", "C4534T", "G4631A", "C4665T", "T4674C", "G4774T", "A4814C", "G4818A", "C4820A", "A4923G", "A4949G", "A5005C", "C5062G", "C5162A", "A5305T", "T5356G", "C5359A", "G5427A", "C5454T", "A5461G", "T5568C", "G5607A", "T5670A", "A5694G", "A5800C", "G5805A", "T5826C", "C5833T", "T5836G", "G5845A", "T5851G", "-5864G", "-5869T", "G5882A", "G5907A", "G5917C", "C5923T", "C6010T", "A6013G", "A6046G", "T6100C", "C6115T", "T6148C", "A6158G", "-6167C", "-6169T", "-6170T", "-6171A", "-6172T", "-6183C", "-6184C", "-6185C", "-6189A", "-6191A", "-6192T", "-6193G", "-6194A", "-6195C", "-6197A", "-6198A", "-6199C", "-6206T", "-6207C", "-6208T", "-6210A", "-6212A", "-6213T", "-6214C", "-6215A", "-6216T", "-6217A", "-6218G", "-6219A", "-6220G", "-6225G", "-6229A", "A6232G", "C6263T", "A6275C", "C6278A", "G6284A", "A6292T", "G6314C", "A6326G", "A6327G", "A6330G", "T6337C", "C6364T", "C6369T", "C6427T", "T6472G", "C6511T", "C6559T", "A6576G", "A6578G", "A6639C", "C6665A", "C6673G", "A6684C", "G6689A", "G6693A", "-6697G", "A6703-", "C6723T", "T6733G", "A6734G", "T6735A", "G6740C", "A6753T", "C6758T", "T6763C", "A6789C", "C6800G", "A6809G", "G6823A", "T6824C", "T6829G", "T6856A", "C6859T", "T6860G", "A6865T", "T6875G", "-6956G", "-6957C", "T6958A", "A6959C", "-6982C", "-6983A", "-6996G", "-6997G", "-6998G", "-6999A", "-7000T", "A7005G", "C7008A", "G7058A", "T7059C", "A7074T", "G7101A", "T7150C", "A7154G", "A7155G", "A7158G", "T7309A", "A7313C", "G7390A", "T7444C", "A7570G", "C7590A", "C7597A", "A7622T", "G7631A", "T7681G", "G7688A", "A7689G", "G7702T", "A7801C", "A7840C", "G7915A", "A7918G", "A7947G", "C7984A", "G8001A", "C8065T", "-8104T", "-8112G", "G8159A", "A8170G", "A8219G", "G8231A", "A8396C", "G8458A", "C8460T", "C8491A", "T8492G", "T8498C", "G8499C", "T8568C", "T8595G", "T8644C"], "INT": ["H171Q", "I208M", "D286N"], "RT-p51": ["I5V", "E40A", "K46Q", "D123G", "K174A", "A200T", "T294I", "A376T", "M403L", "E432D"], "RT-p66": ["I5V", "E40A", "K46Q", "D123G", "K174A", "A200T", "T294I", "A376T", "M403L", "E432D", "L517I", "V548I"], "gp120": ["N1S", "-5N", "V10I", "R18K", "E21D", "T78I", "N102D", "T104H", "-105Y", "-109I", "-110T", "-111T", "-112H", "-115T", "-116N", "-117N", "-118M", "-119S", "-120K", "-121I", "-122I", "-123E", "-124G", "-126M", "K141Q", "Q142K", "V144M", "V154L", "N158G", "N159S", "S162N", "A172V", "N206K", "E241G", "I242V", "K262T", "P271T", "N273K", "K277T", "V279I", "R280H", "I281M", "Y290F", "D294E", "G296R", "Q300L", "H302Y", "Q316E", "T319E", "F325L", "S336A", "L341V", "-368A", "-369H", "-370D", "-371T", "-372N", "-373N", "-374T", "-375G", "-376L", "S377D", "-379G", "T380N", "E381L", "N383-", "T385-", "V402T", "Y407F", "R416K", "N434G", "N435S", "T436A"], "gp41": ["I4L", "T96N", "T107S", "D110N", "N126K", "E129R", "E215G", "R233K", "G286R", "T306A", "A310T"], "nef": ["E18D", "R39K", "H40Y", "A50E", "A53P", "F85V", "I101T"], "p17": ["K28Q", "L46V", "T67A", "K69R", "I92L"], "p24": ["A47C", "H87Q", "I115V", "G116A", "S120G", "T171A", "E180D", "T207S"], "p6": ["P11L", "P30S"], "pro": ["E34A"], "rev": ["I18T", "L73F", "G104E", "I108V"], "tat": ["N23S", "N80D"], "vif": ["H27Y", "Y30H", "R63I", "E76D", "D78K", "N113D", "N140T", "T159R", "H192Q"], "vpr": ["L20I", "T58A", "I84S", "P85Q"], "vpu": ["M65L", "N69V", "D80N", "L82V"]}, "labels": {"aa": "INT: H171Q, I208M, D286N; RT-p51: I5V, E40A, K46Q, D123G, K174A, A200T, T294I, A376T, M403L, E432D; RT-p66: I5V, E40A, K46Q, D123G, K174A, A200T, T294I, A376T, M403L, E432D, L517I, V548I; gp120: N1S, -5N, V10I, R18K, E21D, T78I, N102D, T104H, -105Y, -109I, -110T, -111T, -112H, -115T, -116N, -117N, -118M, -119S, -120K, -121I, -122I, -123E, -124G, -126M, K141Q, Q142K, V144M, V154L, N158G, N159S, S162N, A172V, N206K, E241G, I242V, K262T, P271T, N273K, K277T, V279I, R280H, I281M, Y290F, D294E, G296R, Q300L, H302Y, Q316E, T319E, F325L, S336A, L341V, -368A, -369H, -370D, -371T, -372N, -373N, -374T, -375G, -376L, S377D, -379G, T380N, E381L, N383-, T385-, V402T, Y407F, R416K, N434G, N435S, T436A; gp41: I4L, T96N, T107S, D110N, N126K, E129R, E215G, R233K, G286R, T306A, A310T; nef: E18D, R39K, H40Y, A50E, A53P, F85V, I101T; p17: K28Q, L46V, T67A, K69R, I92L; p24: A47C, H87Q, I115V, G116A, S120G, T171A, E180D, T207S; p6: P11L, P30S; pro: E34A; rev: I18T, L73F, G104E, I108V; tat: N23S, N80D; vif: H27Y, Y30H, R63I, E76D, D78K, N113D, N140T, T159R, H192Q; vpr: L20I, T58A, I84S, P85Q; vpu: M65L, N69V, D80N, L82V"}}}, {"name": "KU168304", "node_attrs": {"div": 0.1567, "accession": "KU168304", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2003.0}, "Strain_name": {"value": "CM1193_8"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C44A", "G51A", "G206T", "-215A", "-216A", "-217A", "-303T", "-304T", "-305A", "T308-", "T309-", "G401A", "A470G", "C531T", "G542A", "A557G", "T572C", "A592T", "A654C", "G683A", "C710T", "G755T", "A758G", "G866A", "A980G", "A1079C", "C1115G", "T1182C", "G1247A", "G1302A", "G1328A", "T1334C", "G1419A", "A1595G", "C1613T", "T1646C", "T1752G", "A1849G", "C1864T", "A1903C", "T1986C", "A2194G", "G2224A", "A2368G", "T2449A", "G2462A", "G2498A", "A2508C", "T2607A", "C2638T", "G2707A", "A2728C", "A2842G", "G2847A", "T2890C", "C2910G", "G2921A", "T2922C", "C3140T", "A3165G", "A3200G", "T3207C", "A3279G", "A3280G", "A3637G", "A3654T", "A3665G", "A3666G", "A3675G", "T3721C", "T3742C", "C3892T", "T3904C", "T3962A", "A3985T", "A4036G", "A4048G", "C4129G", "C4501T", "A4692C", "A4694T", "T4697A", "A4722T", "G4726A", "G4861A", "T4883C", "C4914T", "A4950C", "A4976C", "C5053T", "A5061G", "A5085C", "A5122G", "C5162T", "G5179A", "C5242A", "G5276A", "T5294C", "C5384T", "G5444A", "T5448C", "G5499A", "C5514T", "A5528G", "A5544C", "G5545A", "A5548T", "G5581A", "T5614C", "G5626T", "G5647A", "A5709G", "A5711T", "A5717G", "G5729A", "G5737A", "G5741A", "G5830C", "T5834C", "G5856A", "C5859G", "-5864C", "-5869C", "C5920T", "T5956C", "C6004T", "C6010A", "A6024C", "T6087C", "T6134C", "-6163T", "-6164T", "-6165A", "-6167A", "-6169C", "-6170A", "-6171C", "-6172C", "-6183A", "-6184G", "-6185A", "-6189C", "C6190A", "-6191T", "-6192C", "-6193T", "-6194G", "-6195A", "-6197G", "-6198C", "-6199T", "-6206A", "-6207A", "-6208C", "-6210T", "-6221A", "-6222A", "-6223C", "-6225A", "-6229G", "C6247T", "A6277G", "T6287C", "A6292G", "A6303G", "A6326C", "A6339G", "G6368A", "A6430G", "T6457C", "A6460G", "G6532A", "A6637G", "A6648G", "C6661T", "T6688C", "C6721T", "T6722G", "T6724A", "G6725A", "C6729A", "A6730T", "G6732A", "G6743A", "T6772C", "A6789G", "A6790C", "A6810T", "C6855A", "A6857G", "C6859A", "T6860C", "G6905A", "A6936G", "-6956A", "-6957G", "-6962A", "-6963C", "-6964A", "-6965A", "-6966A", "-6967T", "-6968G", "-6969G", "-6970C", "-6971A", "-6972C", "-6973A", "-6974A", "-6975A", "-6976T", "-6977C", "-6978C", "-6979A", "-6982G", "-6983C", "A6989G", "A6994T", "G6995-", "A7001-", "A7002-", "T7003-", "G7004C", "C7016A", "C7088G", "G7147A", "G7160A", "T7165G", "G7315A", "G7369A", "A7375G", "T7408C", "G7426A", "A7462G", "A7471G", "G7477A", "A7522G", "T7630A", "G7640A", "A7641G", "A7668G", "A7673G", "G7677A", "G7700A", "A7772G", "A7799C", "A7880G", "T7968C", "C7969A", "C8038T", "C8071T", "T8092A", "T8097C", "G8102-", "C8103-", "G8105-", "C8106-", "G8107-", "A8108-", "G8109-", "G8110-", "G8111-", "T8113-", "G8114-", "T8115-", "G8116-", "G8117-", "A8118-", "A8119-", "C8120-", "T8121-", "T8122-", "A8130G", "A8143G", "T8171G", "T8182A", "T8235C", "T8243G", "G8255A", "A8263G", "A8264G", "T8298C", "C8336A", "T8366C", "A8370T", "G8375A", "C8440T", "T8483C", "G8487C", "G8490A", "A8503C", "G8537A", "G8554A", "G8561A", "A8584T", "G8597T", "C8607T", "A8608T", "C8648T", "G8678A", "A8732G", "A8774G", "C8790T", "G8805A", "A8837G", "C8840T", "C8846T", "C8873A", "C8883T", "G8886A", "G8893C", "T8903A", "T8913G", "T8923A", "T8927C", "T9012C", "C9129A", "G9136A", "G9177A"], "INT": ["L63I"], "RT-p51": ["D123S", "V135I", "E138A", "F171Y", "R211S", "S251N", "A272G", "V276T", "K357R", "T369A", "V371A", "K395R"], "RT-p66": ["D123S", "V135I", "E138A", "F171Y", "R211S", "S251N", "A272G", "V276T", "K357R", "T369A", "V371A", "K395R", "Q520L", "K524G", "E527G"], "gp120": ["A2G", "-3Q", "E4N", "S52R", "H57P", "-105K", "-106N", "-107T", "N108S", "-109D", "-110A", "-111N", "-112M", "-115N", "-116E", "-126I", "Y145H", "K150R", "N158Q", "A172T", "K265R", "A291T", "T292N", "G293D", "D294I", "D297N", "T312S", "T319I", "H324Y", "A334D", "N335E", "S336P", "G351R", "E361G", "-379N", "T380P", "-382P", "-384D", "-386H", "Q389T", "Q412E", "N437K"], "gp41": ["I24M", "D109E", "D113S", "K122R", "I124V", "S125N", "D133K", "S157G", "N166Q", "I193V", "I222T", "F263L", "L265S", "A267L", "A268G", "G270S", "V271S", "E272L", "L273K", "L274G", "G275L", "S290A", "I311T", "W314G", "V318I", "I321V", "I332T", "L345I"], "nef": ["I10L", "A33V", "A49P", "A50T", "D54A", "R71K", "Y81F", "H89F", "P150S", "E155K", "D177E", "V182I", "R184T", "S187R", "R188S", "F191V", "R194K"], "p17": ["P66S", "Y86F", "M107L"], "p24": ["L83M", "D128E", "V191I", "V230I"], "p6": ["S24A"], "pro": ["E35D", "L63P", "K70R"], "rev": ["S5G", "E10A", "E11D", "C82S", "C85-", "C86-", "E87-", "G88-", "C89-", "G90-", "T91-", "S99G", "I108S", "S112T"], "tat": ["P3L", "V29M", "K51R", "G57R", "T58S", "V69I", "S87Q"], "vif": ["K36H", "N37K", "S46C", "R47K", "R92K", "H110Y", "K122Q", "R130S", "P156L", "T159A", "K167Q", "K179R"], "vpu": ["S3P", "A7S", "V14I", "K35I", "K37R", "R41K", "D44N", "R45K", "-70Y", "-71H", "-76P", "-77L"]}, "labels": {"aa": "INT: L63I; RT-p51: D123S, V135I, E138A, F171Y, R211S, S251N, A272G, V276T, K357R, T369A, V371A, K395R; RT-p66: D123S, V135I, E138A, F171Y, R211S, S251N, A272G, V276T, K357R, T369A, V371A, K395R, Q520L, K524G, E527G; gp120: A2G, -3Q, E4N, S52R, H57P, -105K, -106N, -107T, N108S, -109D, -110A, -111N, -112M, -115N, -116E, -126I, Y145H, K150R, N158Q, A172T, K265R, A291T, T292N, G293D, D294I, D297N, T312S, T319I, H324Y, A334D, N335E, S336P, G351R, E361G, -379N, T380P, -382P, -384D, -386H, Q389T, Q412E, N437K; gp41: I24M, D109E, D113S, K122R, I124V, S125N, D133K, S157G, N166Q, I193V, I222T, F263L, L265S, A267L, A268G, G270S, V271S, E272L, L273K, L274G, G275L, S290A, I311T, W314G, V318I, I321V, I332T, L345I; nef: I10L, A33V, A49P, A50T, D54A, R71K, Y81F, H89F, P150S, E155K, D177E, V182I, R184T, S187R, R188S, F191V, R194K; p17: P66S, Y86F, M107L; p24: L83M, D128E, V191I, V230I; p6: S24A; pro: E35D, L63P, K70R; rev: S5G, E10A, E11D, C82S, C85-, C86-, E87-, G88-, C89-, G90-, T91-, S99G, I108S, S112T; tat: P3L, V29M, K51R, G57R, T58S, V69I, S87Q; vif: K36H, N37K, S46C, R47K, R92K, H110Y, K122Q, R130S, P156L, T159A, K167Q, K179R; vpu: S3P, A7S, V14I, K35I, K37R, R41K, D44N, R45K, -70Y, -71H, -76P, -77L"}}}]}, {"name": "CRF02_AG_NODE_0000029", "node_attrs": {"div": 0.12235, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C467T", "T602C", "A978T", "G1265A", "A1278G", "A1279G", "A1461G", "T1676C", "G2363A", "G3217A", "G3220A", "A3646G", "C5062T", "C5168T", "G5537A", "G5594A", "T5796C", "-6223A", "A6581G", "G6668A", "-8104T", "-8112G", "A8424G", "T8636A", "A8904C", "G8915T", "T8947A"], "RT-p51": ["V90I"], "RT-p66": ["V90I"], "gp120": ["-105D", "N159E", "M243V"], "gp41": ["D133E", "N166K"], "nef": ["T28E", "F85L", "F202Y"], "p2": ["I13-"], "p24": ["N183G"], "pro": ["K70R"], "tat": ["R54H"], "vif": ["N37G", "T159I"], "vpu": ["F27Y"]}, "labels": {"aa": "RT-p51: V90I; RT-p66: V90I; gp120: -105D, N159E, M243V; gp41: D133E, N166K; nef: T28E, F85L, F202Y; p2: I13-; p24: N183G; pro: K70R; tat: R54H; vif: N37G, T159I; vpu: F27Y"}}, "children": [{"name": "MN153486", "node_attrs": {"div": 0.172, "accession": "MN153486", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2008.0}, "Strain_name": {"value": "08CMBDSH131"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C193T", "T201C", "G205A", "C213T", "G214T", "A286G", "-303T", "-304T", "T308G", "G365A", "T396C", "C456T", "A470G", "C471G", "T485G", "A500C", "A509G", "G518A", "T525C", "A576G", "A592G", "T593G", "T596C", "A609T", "T641A", "A645T", "T655C", "G656A", "G696A", "A704C", "A705T", "G785A", "A1088T", "A1093C", "G1109A", "A1142G", "C1181A", "G1192A", "T1244C", "A1292T", "T1334C", "T1335C", "T1362C", "A1382C", "C1385T", "-1455A", "-1456G", "-1457T", "T1481C", "C1490A", "G1553A", "G1562A", "T1574C", "G1589A", "C1610A", "A1673G", "G1687A", "C1693T", "A1694G", "A1701T", "T1741C", "-1746T", "-1747C", "-1748C", "T1752C", "T1754-", "C1755-", "C1756-", "A1766G", "G1839A", "A1841T", "C1865T", "A1903C", "A1988T", "A2038G", "A2056G", "G2074A", "T2083C", "T2104C", "A2113C", "A2203G", "G2215A", "A2293G", "C2335T", "C2386T", "C2452A", "T2453C", "A2459G", "G2462A", "T2488C", "G2518A", "G2539A", "A2545G", "C2596T", "A2599G", "A2629G", "T2654C", "G2686A", "G2707A", "G2710A", "A2715G", "C2749T", "C2797A", "G2837A", "A2839C", "C2930T", "C2953T", "A3028G", "A3031C", "C3100T", "A3165-", "T3170G", "T3175A", "A3230G", "C3232T", "G3236A", "C3253T", "A3302C", "T3303A", "C3322A", "T3358G", "C3359T", "T3380C", "T3399C", "C3405G", "T3433C", "T3436C", "G3439A", "G3448A", "T3450A", "C3525G", "C3542T", "T3644A", "C3649T", "G3664A", "G3667A", "C3692T", "A3703G", "G3718A", "C3751T", "G3768A", "A3781T", "G3808T", "G3846A", "C3889T", "A3901G", "T3904C", "T3962A", "T3970C", "G4063C", "T4079C", "G4105A", "C4123T", "G4264A", "C4288T", "T4428C", "A4525G", "T4656C", "C4679G", "T4682C", "A4696G", "T4702A", "A4721G", "A4722T", "T4724C", "G4726A", "A4736G", "T4738C", "T4757C", "C4761T", "G4855A", "T4940G", "T4957C", "G4968A", "T4985C", "A5005G", "T5018C", "A5055G", "C5056T", "C5102T", "G5140A", "G5146A", "A5161T", "A5268C", "G5276C", "T5314C", "T5356A", "G5382T", "G5385A", "C5393A", "G5396A", "C5412T", "G5444A", "C5454T", "T5462A", "G5463A", "A5484G", "C5491T", "C5538T", "A5544C", "C5559T", "C5563G", "G5566A", "A5567G", "T5568C", "C5569T", "A5574G", "A5587G", "A5603T", "G5620T", "A5621G", "G5626C", "C5627T", "G5668A", "T5670A", "T5687A", "G5700A", "A5711G", "A5728T", "G5729T", "T5739A", "G5748T", "C5793T", "A5804G", "A5806G", "-5812G", "C5833G", "G5838T", "A5840T", "T5847C", "G5848C", "T5857-", "G5858-", "C5859-", "T5860-", 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"C6925T", "-6956A", "-6957C", "-6980G", "-6981A", "-6982G", "-6983A", "A6989C", "A6992G", "-6996C", "-6997T", "-6998A", "-6999G", "-7000C", "A7005C", "C7006A", "T7009A", "A7030T", "G7044A", "G7054A", "G7072A", "T7130C", "A7149C", "T7150A", "A7155G", "A7157T", "A7158C", "T7159A", "G7160A", "A7162T", "A7269C", "A7313G", "G7315A", "G7322T", "C7324T", "T7325A", "G7390A", "G7440A", "A7462T", "T7604A", "T7630G", "G7640A", "C7655T", "A7668G", "A7673G", "G7688C", "G7702A", "G7712A", "G7717A", "A7763G", "T7774C", "C7775T", "T7783C", "G7790A", "A7791G", "T7843G", "G7846A", "A7880G", "C7921T", "C7936T", "C7959T", "T7968C", "G7977A", "C8005A", "T8007G", "C8009A", "A8032T", "C8037T", "T8047C", "C8048A", "G8050A", "C8051A", "C8062T", "T8092A", "C8106T", "G8133A", "G8144A", "T8167G", "A8170G", "G8184A", "T8205C", "C8213T", "A8222T", "T8256C", "A8275G", "T8287C", "A8288T", "T8290C", "C8311T", "G8354A", "G8388A", "C8425A", "A8446G", "G8476C", "T8480C", "T8483C", "C8488G", "A8489G", "G8490A", "G8499A", "T8505G", "G8506T", "G8528A", "A8531T", "T8568C", "G8570A", "T8600C", "C8601A", "A8666C", "G8753A", "A8754T", "C8755G", "C8756T", "G8762A", "A8780T", "T8789C", "A8795T", "G8798T", "A8806C", "A8812C", "T8832C", "G8868A", "A8869C", "C8873A", "A8879G", "G8885A", "A8916G", "A8922G", "T8923C", "A8930C", "G8931A", "G8933C", "C8957T", "T8972C", "G8977A", "A8978C", "C8979A", "G8991A"], "INT": ["L2F", "E11D", "S24N", "L63I", "E96D", "I218T"], "RT-p51": ["E6D", "K122E", "D123N", "I178M", "E207G", "E248N", "E312D", "S359A", "S379G", "V381I", "M403Q", "V435A", "A437G"], "RT-p66": ["E6D", "K122E", "D123N", "I178M", "E207G", "E248N", "E312D", "S359A", "S379G", "V381I", "M403Q", "V435A", "A437G", "L452Q", "T477S", "H483Y", "L517M", "R558K"], "gp120": ["A2-", "D19E", "E21K", "D34N", "T35P", "V40I", "S52N", "H57Q", "E59V", "M67I", "N71D", "T78I", "N108-", "L137I", "V144M", "N157E", "S160G", "A172V", "I173V", "V180I", "E204G", "T216A", "V217I", "E241K", "I242V", "T250S", "I257M", "N261V", "K262T", "K265R", "V279I", "R280H", "-282H", "-283I", "K307E", "T308K", "E309K", "K312A", "T313A", "Q315Y", "T319V", "K323E", "H324K", "F325V", "-328K", "A334D", "N335K", "S347I", "F348V", "-368T", "-369N", "-370E", "-371T", "-372N", "-373H", "-374A", "-375A", "-379A", "E381D", "-382R", "T385-", "R397N", "M406I", "N432T", "N434S", "N435S", "T436N", "H472P"], "gp41": ["I4V", "V7F", "F8I", "S101T", "D109E", "D113N", "K122R", "I124V", "E129Q", "E137K", "K154E", "D163S", "I193V", "P219L", "I222T", "G225E", "V235G", "A245V", "L249I", "F263L", "A268V", "A281T", "I301T", "L304F", "I307L", "V318A", "I329F", "L340F"], "nef": ["Q15K", "V16I", "Q35R", "S45T", "A49G", "A50T", "A53T", "C55V", "E63D", "L87I", "E108D", "T138C", "E152D", "E155A", "N157T", "E176T", "D177E", "K192E", "R194A", "E197N"], "p1": ["S9N"], "p17": ["L46V", "E55D", "M61I", "T81A", "Y86W", "I92L", "D102E", "I104L", "M107T", "A121S", "S124C", "S129-"], "p2": ["-12V"], "p24": ["S14N", "N121T", "R154K", "E187D"], "p6": ["S3N", "P5L", "T8S", "I21T"], "p7": ["D48E"], "pro": ["R14K", "I15L", "E35D", "I64L"], "rev": ["A8I", "E10A", "A15V", "I18A", "K20R", "P30S", "A54E", "T62S", "S67H", "A68K", "P72S", "C82S", "S99N", "S107A", "I108V"], "tat": ["E2D", "P6H", "S7N", "Q63E", "D64S", "H65Y", "K71E", "T76I", "P84S", "S87P"], "vif": ["F39Y", "S46C", "R47K", "V51A", "R90K", "I124T", "V128I", "N140S", "T157V", "G185E", "R187H", "H192L"], "vpr": ["E55A", "I84N", "A93S", "G94S"], "vpu": ["E5*", "A7L", "V21I", "K35R", "R41L", "D44E", "R47S", "L61Q", "S62E", "T63E", "M65S", "E66T", "N69V", "-72G", "-73D", "-74Y", "-75D", "-76V", "-77F", "D78V", "D81H"]}, "labels": {"aa": "INT: L2F, E11D, S24N, L63I, E96D, I218T; RT-p51: E6D, K122E, D123N, I178M, E207G, E248N, E312D, S359A, S379G, V381I, M403Q, V435A, A437G; RT-p66: E6D, K122E, D123N, I178M, E207G, E248N, E312D, S359A, S379G, V381I, M403Q, V435A, A437G, L452Q, T477S, H483Y, L517M, R558K; gp120: A2-, D19E, E21K, D34N, T35P, V40I, S52N, H57Q, E59V, M67I, N71D, T78I, N108-, L137I, V144M, N157E, S160G, A172V, I173V, V180I, E204G, T216A, V217I, E241K, I242V, T250S, I257M, N261V, K262T, K265R, V279I, R280H, -282H, -283I, K307E, T308K, E309K, K312A, T313A, Q315Y, T319V, K323E, H324K, F325V, -328K, A334D, N335K, S347I, F348V, -368T, -369N, -370E, -371T, -372N, -373H, -374A, -375A, -379A, E381D, -382R, T385-, R397N, M406I, N432T, N434S, N435S, T436N, H472P; gp41: I4V, V7F, F8I, S101T, D109E, D113N, K122R, I124V, E129Q, E137K, K154E, D163S, I193V, P219L, I222T, G225E, V235G, A245V, L249I, F263L, A268V, A281T, I301T, L304F, I307L, V318A, I329F, L340F; nef: Q15K, V16I, Q35R, S45T, A49G, A50T, A53T, C55V, E63D, L87I, E108D, T138C, E152D, E155A, N157T, E176T, D177E, K192E, R194A, E197N; p1: S9N; p17: L46V, E55D, M61I, T81A, Y86W, I92L, D102E, I104L, M107T, A121S, S124C, S129-; p2: -12V; p24: S14N, N121T, R154K, E187D; p6: S3N, P5L, T8S, I21T; p7: D48E; pro: R14K, I15L, E35D, I64L; rev: A8I, E10A, A15V, I18A, K20R, P30S, A54E, T62S, S67H, A68K, P72S, C82S, S99N, S107A, I108V; tat: E2D, P6H, S7N, Q63E, D64S, H65Y, K71E, T76I, P84S, S87P; vif: F39Y, S46C, R47K, V51A, R90K, I124T, V128I, N140S, T157V, G185E, R187H, H192L; vpr: E55A, I84N, A93S, G94S; vpu: E5*, A7L, V21I, K35R, R41L, D44E, R47S, L61Q, S62E, T63E, M65S, E66T, N69V, -72G, -73D, -74Y, -75D, -76V, -77F, D78V, D81H"}}}, {"name": "CRF02_AG_NODE_0000030", "node_attrs": {"div": 0.13339, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["-215A", "-216A", "-217A", "A492T", "T614G", "A708T", "-720A", "-721G", "-722C", "A762G", "C763T", "A771C", "A772C", "G914A", "G1301A", "A1580G", "A1592G", "A1840G", "C2211T", "A2212G", "C2326T", "C2365A", "C2369T", "G2428A", "A2593G", "G2727A", "A2788G", "C2848T", "T2983A", "T3223C", "A3379G", "A3520G", "A3529G", "C3712T", "A3770G", "C3994T", "T4321C", "G4366A", "A4622G", "G4637A", "G4774A", "G4904A", "A4937C", "A4949G", "G5059A", "G5137A", "C5186A", "G5246A", "A5248C", "C5478T", "C5496A", "A5602T", "G5715A", "A5738C", "-5861A", "G5881A", "G5917T", "C5949G", "A6073G", "G6121A", "T6148C", "C6155T", "-6185A", "-6191A", "-6192A", "-6194A", "-6196C", "-6199C", "-6200A", "-6202C", "-6204G", "-6205C", "-6206A", "-6209G", "-6210A", "-6211G", "-6215A", "-6218G", "-6220G", "C6305G", "-6333C", "T6334A", "A6339G", "G6464A", "G6466T", "A6550G", "C6551T", "G6583A", "A6605G", "T6632C", "A6833-", "C6840A", "C6861A", "-6979A", "-6983T", "-6996A", "-6997G", "-6998T", "-6999C", "-7000A", "T7045G", "A7148G", "A7152G", "G7198A", "A7342G", "G7477A", "T7516C", "G7628A", "G7690C", "A7705C", "C7984A", "C8103T", "G8329A", "T8411C", "G8558A", "C8740T", "T8768C", "T8849C", "G8929A", "C8948T", "T9094G"], "INT": ["S283G", "D288N"], "RT-p51": ["T39M", "R211K"], "RT-p66": ["T39M", "R211K", "I559V"], "gp120": ["N1S", "-3K", "E21D", "A32G", "-115S", "-116S", "-117G", "L151V", "S160T", "E204N", "N251D", "H324Y", "N327-", "-328N", "T329K", "-382S", "-384D"], "gp41": ["K46R", "D109N", "A267V", "Q294R"], "nef": ["T133I"], "p17": ["T53S", "D93E", "S125C"], "p2": ["Q8T", "Q9N", "S11-"], "p24": ["T11V"], "tat": ["N23S", "N40K"], "vif": ["R63K", "E117D", "R158K", "R184K"], "vpr": ["H28N", "E48N", "Q58E"], "vpu": ["D44A", "-70Y", "-71D", "-72L", "-73L", "D81A"]}, "labels": {"aa": "INT: S283G, D288N; RT-p51: T39M, R211K; RT-p66: T39M, R211K, I559V; gp120: N1S, -3K, E21D, A32G, -115S, -116S, -117G, L151V, S160T, E204N, N251D, H324Y, N327-, -328N, T329K, -382S, -384D; gp41: K46R, D109N, A267V, Q294R; nef: T133I; p17: T53S, D93E, S125C; p2: Q8T, Q9N, S11-; p24: T11V; tat: N23S, N40K; vif: R63K, E117D, R158K, R184K; vpr: H28N, E48N, Q58E; vpu: D44A, -70Y, -71D, -72L, -73L, D81A"}}, "children": [{"name": "JX140646", "node_attrs": {"div": 0.17269, "accession": "JX140646", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2008.0}, "Strain_name": {"value": "DE00208CM001"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C179T", "T200C", "T201G", "G206T", "A265G", "-303A", "C316T", "A359G", "A398G", "G407A", "C435T", "A530G", "A566C", "A592T", "C603A", "A604G", "A620T", "G671A", "A692G", "G696A", "G706A", "A725G", "A759T", "T760G", "C771T", "G776A", "G821A", "T992G", "A1017C", "A1079G", "C1118G", "G1145A", "C1181T", "G1199A", "A1242G", "T1244C", "G1247A", "G1313A", "C1322T", "T1334C", "G1404A", "A1415T", "G1430A", "T1444C", "G1451A", "-1455A", "-1456G", "-1457T", "G1508A", "C1535T", "G1619A", "T1646C", "A1657G", "A1697G", "A1701T", "T1722C", "G1727A", "T1749C", "C1756T", "C1768A", "G1771A", "C1775-", "A1776-", "A1777-", "T1796C", "A1841G", "G1852A", "C1853T", "C1873T", "G1898A", "A1899C", "A1906G", "A1908G", "G1981A", "A1982G", "A1990G", "A2026G", "T2066C", "G2074A", "T2101A", "A2233G", "T2299C", "T2315C", "C2353T", "C2464A", "T2476C", "T2494C", "G2498A", "G2626A", "G2677A", "G2704A", "A2715C", "A2726G", "A2734G", "C2749T", "A2764G", "A2839C", "A2937G", "C2978T", "G3004A", "A3043G", "A3279G", "G3398T", "C3449T", "G3477A", "C3500A", "T3541C", "A3571G", "T3602C", "A3665G", "G3674A", "A3676G", "C3682T", "G3808T", "G3846A", "A3866G", "T3962A", "T3991C", "T4039C", "G4063T", "G4228A", "T4234C", "C4270T", "T4276G", "C4288T", "T4396C", "A4581G", "T4585C", "A4625G", "A4687G", "A4696G", "T4701G", "A4717T", "A4735G", "G4737A", "A4753G", "T4757C", "G4786A", "C4826A", "A4878G", "C4889A", "C4890T", "T4891C", "A4988C", "G5036A", "A5048G", "A5065G", "T5073C", "T5084C", "A5086G", "C5102T", "A5112G", "G5143A", "G5146A", "T5148A", "T5168A", "C5237T", "T5245C", "A5247C", "A5277T", "T5293A", "C5359G", "G5382A", "C5415T", "A5431C", "T5448A", "C5454T", "T5462A", "T5467G", "G5468T", "T5482A", "A5548C", "A5574G", "C5611A", "T5614G", "T5687A", "A5694G", "G5700A", "C5727T", "G5729A", "G5730A", "G5737A", "G5755A", "A5787T", "T5788A", "T5789C", "-5812G", "A5849G", "T5850C", "-5862A", "-5863A", "-5864G", "A5866T", "A5867-", "A5868-", "G5907A", "T5911A", "T5968C", "A6061G", "A6088G", "A6119C", "T6154G", "-6163T", "-6164A", "-6165G", "-6166T", "-6167G", "-6169C", "-6170C", "-6171T", "-6172C", "-6173A", "-6174A", "-6175C", "-6176A", "-6177G", "-6178T", "-6179A", "-6180G", "-6182C", "-6183C", "-6184C", "-6187C", "-6188A", "-6189A", "-6193T", "-6195G", "-6197C", "-6198T", "-6201A", "-6203T", "-6207G", "-6208C", "-6212T", "-6213G", "-6214C", "-6216G", "-6217T", "-6219G", "-6221A", "-6222G", "-6225A", "-6226G", "-6229A", "A6232G", "A6251G", "A6276C", "C6278A", "A6283G", "T6287C", "A6303G", "A6320C", "-6331A", "G6336A", "T6340C", "A6344G", "C6347T", "T6355C", "T6361C", "A6374G", "A6456G", "T6457G", "A6489G", "G6532A", "G6561A", "C6601T", "G6640T", "C6641A", "A6649C", "A6654C", "C6660T", "C6661G", "G6669A", "A6683G", "T6760C", "A6774G", "G6779A", "A6781G", "A6785G", "A6789G", "C6797G", "C6800A", "A6811G", "A6818C", "G6819A", "G6820T", "T6860C", "A6935G", "C6938T", "G6948A", "C6949G", "T6953-", "G6954-", "G6955-", "-6956T", "-6957T", "-6962G", "-6963A", "-6964T", "-6965A", "-6966C", "-6967T", "-6972G", "-6973A", "-6974T", "-6975C", "-6976T", "-6977A", "-6978A", "-6982G", "C6984T", "A6990G", "C6993G", "A6994T", "C7006T", "C7024T", "A7037T", "C7079T", "A7123T", "G7147T", "T7150A", "T7153C", "A7155C", "T7156A", "A7158G", "T7159A", "A7162T", "T7255A", "C7268T", "A7313C", "A7396G", "A7427G", "T7433C", "A7462C", "T7609C", "A7629G", "A7668G", "A7691C", "A7693G", "G7712A", "T7748C", "G7754T", "A7791G", "A7796T", "A7799C", "T7844C", "G7846A", "G7868A", "A7948T", "G7961A", "G7977A", "A8023G", "C8071T", "T8094C", "C8095A", "T8113C", "G8114C", "T8171G", "G8180A", "G8181T", "C8183A", "G8194A", "A8204G", "A8208G", "T8257G", "G8279T", "C8291T", "A8305G", "T8321G", "A8385C", "G8388A", "A8407G", "C8412G", "C8413A", "T8414A", "C8415A", "C8416G", "C8425A", "A8435G", "C8477T", "G8537A", "T8546C", "G8579A", "G8588A", "T8595G", "T8646C", "A8653G", "A8666C", "G8717T", "A8739G", "G8753A", "G8805A", "C8825T", "T8835C", "A8837G", "G8864C", "A8869C", "A8916G", "A8918G", "A8922G", "C8928A", "G8931A", "A8932G", "G8977A", "A8978C", "C8979A", "G8994A", "G9006A", "C9056T", "A9134-", "G9135A"], "INT": ["E11D", "S24N", "I31V", "L63I", "E96D", "D167E", "K269R", "R284G"], "RT-p51": ["D123E", "V135I", "E207A", "K211E", "E248D", "K281R", "K395R", "V435L"], "RT-p66": ["D123E", "V135I", "E207A", "K211E", "E248D", "K281R", "K395R", "V435L", "R461K", "L469I", "K524E", "E527K"], "gp120": ["E4D", "R18K", "D19E", "T78M", "K89Q", "T104S", "-106L", "-109C", "-110T", "-111C", "-112N", "-113S", "-114S", "-118R", "-119E", "-120E", "-121M", "E125-", "M133V", "K141T", "Q142K", "Y145H", "K150R", "I156L", "R164G", "T174A", "N201R", "K212R", "S236N", "K262N", "P263T", "K265N", "N267T", "T269M", "K277E", "D294E", "K307R", "E309K", "N311D", "K312R", "Q315E", "Q316K", "T319K", "R322H", "S336H", "K361E", "S365K", "W367F", "-368N", "-369D", "-370T", "N378S", "-379I", "T380K", "I395F", "P409S", "N432G", "N433-", "N434-", "T436E", "N437S", "H472Y"], "gp41": ["I4L", "S42G", "N109S", "K122R", "E129D", "I130L", "E137K", "A151S", "D163G", "T165S", "K166Q", "A189T", "E215D", "E220K", "G225E", "V264A", "V271L", "S290A", "G293I", "I301V", "N302S", "G326C", "L330F", "L340V"], "nef": ["V16I", "Q22R", "P24E", "P25R", "M79I", "L85V", "Y102H", "K104R", "E108D", "Q125H", "I133V", "E155K", "E174D", "E176A", "K192E", "R194V", "R196K", "E197R"], "p17": ["Y86F", "Q90R", "K95N", "A121S", "S124N"], "p2": ["T8-", "N9-", "T10-"], "p24": ["M10W", "M15I", "H87Q", "M96L", "I129M", "T171A", "G225S"], "p6": ["T8S", "F15L", "S23-", "S24P", "P25S", "-26L", "P30Q", "R31K", "D32E", "K33G", "G34L", "L35Y", "Y36P"], "pro": ["I15V", "E34T", "I36M", "N37S", "I62V", "I64M"], "rev": ["A8T", "E11D", "K20R", "T34S", "R38Q", "I59V", "L83I", "C89P", "I108S", "G111D", "S112*", "E116K"], "tat": ["T19P", "N24K", "C31V", "L36I", "T58P", "N80I"], "vif": ["K34R", "F39V", "Y44F", "K50R", "V51I", "H56R", "R67K", "H80Q", "I98V", "D101E", "L102S", "E134D", "K160R", "K167R", "K176E", "S186N", "R187H", "S188T"], "vpr": ["Q3R", "F15Y", "L22M", "H45Y", "N48T", "E58V", "P85R", "A93T"], "vpu": ["Q2K", "S3A", "R41K", "A44T", "A50T", "N69D", "A81G"]}, "labels": {"aa": "INT: E11D, S24N, I31V, L63I, E96D, D167E, K269R, R284G; RT-p51: D123E, V135I, E207A, K211E, E248D, K281R, K395R, V435L; RT-p66: D123E, V135I, E207A, K211E, E248D, K281R, K395R, V435L, R461K, L469I, K524E, E527K; gp120: E4D, R18K, D19E, T78M, K89Q, T104S, -106L, -109C, -110T, -111C, -112N, -113S, -114S, -118R, -119E, -120E, -121M, E125-, M133V, K141T, Q142K, Y145H, K150R, I156L, R164G, T174A, N201R, K212R, S236N, K262N, P263T, K265N, N267T, T269M, K277E, D294E, K307R, E309K, N311D, K312R, Q315E, Q316K, T319K, R322H, S336H, K361E, S365K, W367F, -368N, -369D, -370T, N378S, -379I, T380K, I395F, P409S, N432G, N433-, N434-, T436E, N437S, H472Y; gp41: I4L, S42G, N109S, K122R, E129D, I130L, E137K, A151S, D163G, T165S, K166Q, A189T, E215D, E220K, G225E, V264A, V271L, S290A, G293I, I301V, N302S, G326C, L330F, L340V; nef: V16I, Q22R, P24E, P25R, M79I, L85V, Y102H, K104R, E108D, Q125H, I133V, E155K, E174D, E176A, K192E, R194V, R196K, E197R; p17: Y86F, Q90R, K95N, A121S, S124N; p2: T8-, N9-, T10-; p24: M10W, M15I, H87Q, M96L, I129M, T171A, G225S; p6: T8S, F15L, S23-, S24P, P25S, -26L, P30Q, R31K, D32E, K33G, G34L, L35Y, Y36P; pro: I15V, E34T, I36M, N37S, I62V, I64M; rev: A8T, E11D, K20R, T34S, R38Q, I59V, L83I, C89P, I108S, G111D, S112*, E116K; tat: T19P, N24K, C31V, L36I, T58P, N80I; vif: K34R, F39V, Y44F, K50R, V51I, H56R, R67K, H80Q, I98V, D101E, L102S, E134D, K160R, K167R, K176E, S186N, R187H, S188T; vpr: Q3R, F15Y, L22M, H45Y, N48T, E58V, P85R, A93T; vpu: Q2K, S3A, R41K, A44T, A50T, N69D, A81G"}}}, {"name": "MH705136", "node_attrs": {"div": 0.15735000000000002, "accession": "MH705136", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2004.0}, "Strain_name": {"value": "459_16"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T9G", "T23C", "C96A", "A159T", "T163C", "A263G", "G317A", "G361C", "G378T", "A534G", "G650A", "A674T", "G697C", "A749T", "A803G", "C823G", "C897T", "C902T", "A941G", "C1060A", "A1070G", "A1089G", "C1098T", "A1151G", "A1154C", "C1187T", "G1192A", "T1238C", "T1245C", "C1304T", "T1329A", "A1359T", "-1458A", "-1459A", "-1460C", "G1476A", "C1541T", "C1782A", "G2002A", "G2008A", "T2080G", "A2194G", "T2323C", "A2344G", "A2410G", "T2453C", "A2515G", "C2613T", "A2629G", "T2708C", "A2755G", "C2822T", "C2828G", "G2878A", "C2976T", "G3059A", "A3224T", "C3225T", "C3376T", "A3385G", "T3551C", "C3763T", "C3787A", "T3898C", "T3904C", "A3985G", "C4047A", "C4132A", "G4306A", "A4555G", "A4567G", "C4569T", "A4573G", "T4656C", "G4664A", "T4691C", "A4693G", "A4721G", "A4736G", "G4861A", "A4900G", "G4968A", "A5061G", "A5085C", "G5140A", "C5162T", "A5187C", "T5221A", "T5293C", "T5314C", "C5384T", "T5448C", "A5461G", "C5469T", "A5537C", "C5560T", "T5614C", "T5616C", "T5686C", "A5702G", "G5730T", "A5746C", "G5747A", "A5800C", "-5824A", "T5835G", "A5840G", "A5849C", "-5869A", "A5872G", "G6029A", "G6079A", "T6087C", 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"-369A", "-370N", "-379H", "K393R", "P412R", "V414E", "N432D", "N433G", "T436A", "N437T", "I466L"], "gp41": ["H53Q", "T96N", "E129H", "E133Q", "A156E", "N160S", "D163N", "I186V", "A281T", "L284V", "G286W", "L288H", "S299N", "G322A", "R324G"], "nef": ["Q15K", "T23A", "E28P", "Q35R", "D38E", "A49P", "A50G", "A83G", "H116N", "F120Y", "D149E", "N157T", "E158K", "M173I", "F191L", "R196Q", "L198M"], "p1": ["S9N"], "p17": ["S9T", "A15S", "T67A", "Q113H"], "p2": ["T10V"], "p24": ["S14P", "A31G", "T110N", "S120G", "P123S", "R154K", "S200T", "T210S"], "p6": ["L35I"], "p7": ["G4S"], "rev": ["A8P", "A54E", "S67P", "A68T", "C82R", "G96H", "S99N", "T102S", "G104V"], "tat": ["P3L", "K29V", "H54P", "R62C"], "vif": ["K36R", "G37D", "R92K", "Q105R", "V128I", "I159V", "K167Q", "G185E"], "vpr": ["N28T"], "vpu": ["S3P", "Y27L", "K32R", "R41S", "R47Q", "M65L", "-74G", "-75N", "D78-", "N79-"]}, "labels": {"aa": "INT: A91E, S119R, A265V; RT-p51: T173I, I178M, P243S, Q245E, T294I, A322T, T377L; RT-p66: T173I, I178M, P243S, Q245E, T294I, A322T, T377L; gp120: E4-, -5K, E59K, K89V, N102E, T104G, D105K, -106V, -107N, -118N, -119W, -120S, -121K, -122E, -123M, -124M, -126E, R138S, I153V, E159H, N161S, F189Y, E241G, I242V, V243A, E247A, A253T, N261F, K262E, N272S, A288T, R299K, Q315H, I332A, T360S, K361N, N364D, T366A, -368E, -369A, -370N, -379H, K393R, P412R, V414E, N432D, N433G, T436A, N437T, I466L; gp41: H53Q, T96N, E129H, E133Q, A156E, N160S, D163N, I186V, A281T, L284V, G286W, L288H, S299N, G322A, R324G; nef: Q15K, T23A, E28P, Q35R, D38E, A49P, A50G, A83G, H116N, F120Y, D149E, N157T, E158K, M173I, F191L, R196Q, L198M; p1: S9N; p17: S9T, A15S, T67A, Q113H; p2: T10V; p24: S14P, A31G, T110N, S120G, P123S, R154K, S200T, T210S; p6: L35I; p7: G4S; rev: A8P, A54E, S67P, A68T, C82R, G96H, S99N, T102S, G104V; tat: P3L, K29V, H54P, R62C; vif: K36R, G37D, R92K, Q105R, V128I, I159V, K167Q, G185E; vpr: N28T; vpu: S3P, Y27L, K32R, R41S, R47Q, M65L, -74G, -75N, D78-, N79-"}}}]}]}]}]}]}]}]}, {"name": "CRF02_AG_NODE_0000031", "node_attrs": {"div": 0.09926, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T596C", "G671A", "-1452T", "A1657G", "A3385G", "G3442A", "G3769A", "G4855A", "C5384T", "T5448G", "A5825-", "T5826-", "C5911T", "-6177A", "-6178C", "-6196C", "-6197A", "A6638G", "-6963A", "-6964T", "T6988-", "C7433T", "A8531C", "C9068T"], "gp120": ["N157D", "K262E"], "tat": ["P3L", "N24K"], "vif": ["R90K", "T159K"]}, "labels": {"aa": "gp120: N157D, K262E; tat: P3L, N24K; vif: R90K, T159K"}}, "children": [{"name": "CRF02_AG_NODE_0000032", "node_attrs": {"div": 0.10088, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A1458-", "G2389A", "T2668A", "A3279G", "-5815G", "-5869T", "T6046G", "-6195G", "-6199C", "-6214A", "-6215A", "-6833A", "-6834A", "-6984C", "-6988C", "-7000A", "A7290G", "G7873A", "G7918A", "G8490C", "C8491A"], "RT-p51": ["K395R"], "RT-p66": ["K395R"], "gp120": ["N64K", "A334T", "E479G"], "nef": ["A50H", "E63D"], "p6": ["F15L"], "tat": ["S61N"]}, "labels": {"aa": "RT-p51: K395R; RT-p66: K395R; gp120: N64K, A334T, E479G; nef: A50H, E63D; p6: F15L; tat: S61N"}}, "children": [{"name": "AB231895", "node_attrs": {"div": 0.14565, "accession": "AB231895", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GH"}, "date": {"value": 2003.0}, "Strain_name": {"value": "GHNJ185"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T10C", "C44A", "G51A", "-167G", "C200T", "G205A", "T206G", "C213T", "A265G", "A353G", "T362C", "G424A", "C426T", "A428G", "C435T", "C456T", "T485C", "A492T", "A500T", "C507A", "C510G", "G524T", "T636C", "A656C", "C657A", "A659G", "A660C", "T662A", "G667C", "C668A", "A669C", "A671G", "A676G", "A680T", "T746C", "A762G", "G776A", "G791A", "G803A", "C827T", "A878G", "C974T", "A978G", "A1002G", "T1003C", "C1005G", "A1049G", "T1121C", "C1187T", "C1261G", "G1265A", "C1299A", "G1339A", "A1340G", "T1362C", "G1404A", "T1422C", "T1444C", 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"-6217G", "-6218G", "-6219T", "-6220A", "A6221C", "G6224A", "G6225C", "G6226A", "A6232G", "A6234G", "G6253A", "T6263A", "A6268G", "A6279G", "A6282G", "A6283G", "T6285A", "T6287C", "G6303A", "T6306C", "G6311A", "T6322-", "A6323-", "A6324-", "A6333C", "G6336A", "T6337C", "-6340G", "G6345T", "G6346C", "C6370T", "A6442G", "G6463A", "G6464C", "A6489G", "G6490T", "A6500T", "A6532G", "C6559T", "G6566T", "A6576G", "C6612T", "C6618T", "C6641A", "A6648G", "T6658C", "C6673T", "T6676C", "A6686-", "G6687-", "T6688-", "G6689-", "T6690-", "A6691-", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6728C", "C6729A", "A6730C", "C6769A", "G6774A", "G6779A", "A6789T", "A6801G", "C6812A", "A6821G", "C6824T", "-6830G", "-6831G", "-6832T", "-6835C", "A6837C", "A6842G", "T6849G", "C6850G", "T6875A", "A6877G", "A6936G", "C6949T", "-6956T", "-6957A", "A6960G", "T6961C", "A6962G", "T6967C", "-6974A", "-6975C", "-6976T", "-6977G", "-6985A", "A6989C", "C6991A", "-6994A", "-6995G", "-6996A", "-6997G", "-6998T", "-6999C", "T7009C", "C7018A", "G7040A", "G7056C", "A7066G", "C7089A", "T7117C", "A7120T", "C7124T", "T7153G", "A7157C", "G7198A", "A7240G", "C7250A", "A7265T", "C7267T", "A7269C", "G7291A", "T7309C", "A7375G", "G7390A", "C7480T", "G7501A", "G7519A", "A7552G", "C7579T", "A7583C", "T7625C", "A7626T", "A7629G", "T7630G", "C7655T", "A7667G", "A7668C", "G7688A", "A7689C", "C7690A", "A7691T", "A7700G", "A7701G", "C7747T", "A7750G", "T7801A", "A7818G", "T7852C", "G7862A", "C7936T", "C7984A", "A8011C", "G8050A", "C8062T", "A8069C", "G8070T", "T8094C", "C8095A", "G8105A", "T8113A", "G8133A", "G8134C", "A8151G", "T8210C", "A8233G", "A8273G", "G8274C", "T8290C", "C8293T", "A8294C", "C8296T", "G8317A", "C8321T", "G8375A", "A8403G", "G8404T", "C8425T", "A8474G", "T8480C", "T8492A", "G8502A", "T8507C", "C8510A", "G8554A", "A8584T", "T8594G", "T8595G", "T8645C", "A8663G", "C8684T", "C8720T", "G8798C", "A8807G", "C8809A", "G8814A", "A8827C", "G8893A", "G8905T", "C8906G", "T8923A", "T9051A", "T9060A", "C9078T", "G9137A"], "INT": ["S24N", "D25E", "I60T", "I72V", "I101L", "K188R", "T218S", "A265V", "K269R", "M275V", "G283S", "D286E"], "RT-p51": ["T35L", "E36D", "T39A", "E79D", "Q91P", "L92I", "V135I", "T173M", "R211K", "K281R", "T294P", "V326I", "T369A", "E370A", "A376S", "M403T", "V435A"], "RT-p66": ["T35L", "E36D", "T39A", "E79D", "Q91P", "L92I", "V135I", "T173M", "R211K", "K281R", "T294P", "V326I", "T369A", "E370A", "A376S", "M403T", "V435A", "H483L", "A502V", "K524R", "E527G"], "gp120": ["-3Q", "E4N", "-5F", "L6G", "W7-", "T35A", "N52S", "Q54K", "H57F", "E78V", "N102E", "N108-", "-112V", "-114S", "I126M", "K127R", "M133I", "L137I", "Q142R", "K143R", "V144E", "Y145H", "R150K", "L151P", "V153I", "D157-", "N159D", "S160T", "N161E", "S162T", "R164I", "E204Q", "K212S", "T216S", "A238S", "E241G", "A253V", "T255I", "P263T", "K265R", "N272S", "S278G", "V279I", "R280H", "T292H", "E309K", "N312I", "K316R", "Q320K", "K323E", "H324Y", "-326G", "N328T", "T330A", "I332R", "L341M", "K361G", "-368Y", "N369S", "-370D", "-372T", "-373A", "-379Q", "-381E", "-382S", "-384D", "V396I", "R401T", "P412Q", "N433K", "N435H", "L466I", "T471S", "H472P"], "gp41": ["I24M", "T94P", "Y108L", "N109R", "K122A", "D129T", "I130L", "N133G", "N166K", "K172R", "V187I", "S256L", "V264A", "A268T", "K283R", "R324A", "N331H", "L340F"], "nef": ["Q15K", "R21V", "T28I", "H50Q", "D54N", "R71K", "Y81F", "F85V", "E152D", "A156D", "E158K", "N162T", "R184K", "R188M", "I194K"], "p17": ["R30K", "T53S", "E55D", "Q58K", "Q59E", "Q63H", "Q108K", "N109Q", "S111T", "K112Q", "K114R"], "p2": ["V7A", "Q8H", "M14L"], "p24": ["M15I", "I91A", "P92A", "A177G", "L190M", "R203K", "G225S"], "p6": ["T8S", "S23P"], "p7": ["R10K"], "pro": ["I64M"], "rev": ["L13I", "A15T", "V16I", "P30S", "I55L", "A68T", "P72S", "Q74P", "L83I", "S86N", "C89S", "G96Q"], "tat": ["K29M", "P59N", "R62H", "T76I"], "vif": ["M16R", "R19K", "H27Y", "K33R", "F39Y", "K50R", "V65I", "H110Y", "D117E", "R132K", "T155A", "T157P", "K159I", "K167R", "H192C"], "vpr": ["T19M", "E58Q", "Q77R"], "vpu": ["Q2L", "E5Q", "F27Y", "D44N", "E48D", "D78-", "N79-"]}, "labels": {"aa": "INT: S24N, D25E, I60T, I72V, I101L, K188R, T218S, A265V, K269R, M275V, G283S, D286E; RT-p51: T35L, E36D, T39A, E79D, Q91P, L92I, V135I, T173M, R211K, K281R, T294P, V326I, T369A, E370A, A376S, M403T, V435A; RT-p66: T35L, E36D, T39A, E79D, Q91P, L92I, V135I, T173M, R211K, K281R, T294P, V326I, T369A, E370A, A376S, M403T, V435A, H483L, A502V, K524R, E527G; gp120: -3Q, E4N, -5F, L6G, W7-, T35A, N52S, Q54K, H57F, E78V, N102E, N108-, -112V, -114S, I126M, K127R, M133I, L137I, Q142R, K143R, V144E, Y145H, R150K, L151P, V153I, D157-, N159D, S160T, N161E, S162T, R164I, E204Q, K212S, T216S, A238S, E241G, A253V, T255I, P263T, K265R, N272S, S278G, V279I, R280H, T292H, E309K, N312I, K316R, Q320K, K323E, H324Y, -326G, N328T, T330A, I332R, L341M, K361G, -368Y, N369S, -370D, -372T, -373A, -379Q, -381E, -382S, -384D, V396I, R401T, P412Q, N433K, N435H, L466I, T471S, H472P; gp41: I24M, T94P, Y108L, N109R, K122A, D129T, I130L, N133G, N166K, K172R, V187I, S256L, V264A, A268T, K283R, R324A, N331H, L340F; nef: Q15K, R21V, T28I, H50Q, D54N, R71K, Y81F, F85V, E152D, A156D, E158K, N162T, R184K, R188M, I194K; p17: R30K, T53S, E55D, Q58K, Q59E, Q63H, Q108K, N109Q, S111T, K112Q, K114R; p2: V7A, Q8H, M14L; p24: M15I, I91A, P92A, A177G, L190M, R203K, G225S; p6: T8S, S23P; p7: R10K; pro: I64M; rev: L13I, A15T, V16I, P30S, I55L, A68T, P72S, Q74P, L83I, S86N, C89S, G96Q; tat: K29M, P59N, R62H, T76I; vif: M16R, R19K, H27Y, K33R, F39Y, K50R, V65I, H110Y, D117E, R132K, T155A, T157P, K159I, K167R, H192C; vpr: T19M, E58Q, Q77R; vpu: Q2L, E5Q, F27Y, D44N, E48D, D78-, N79-"}}}, {"name": "CRF02_AG_NODE_0000033", "node_attrs": {"div": 0.104, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C227T", "A645G", "T763C", "G1661A", "G2509A", "A2629G", "A3165G", "G3667A", "A3866G", "C5062A", "A5063G", "T5152C", "T5293A", "A5848G", "-6180A", "-6200G", "-6203A", "-6204A", "-6205C", "-6210C", "-6212A", "A6323G", "G6577A", "G6634A", "-6956A", "-6983T", "A7108C", "C7171T", "A7440G", "C8051A", "C8277T", "A8746T", "A8917G", "C8934A"], "INT": ["I31V"], "RT-p51": ["I178L", "K357R"], "RT-p66": ["I178L", "K357R"], "gp120": ["-105D", "Y145S", "-373S"], "gp41": ["K46R"], "nef": ["Y135F", "K192R", "L198R"], "p17": ["I104V"], "p24": ["V11T"], "rev": ["A68E"], "vif": ["M189T"], "vpu": ["-70D"]}, "labels": {"aa": "INT: I31V; RT-p51: I178L, K357R; RT-p66: I178L, K357R; gp120: -105D, Y145S, -373S; gp41: K46R; nef: Y135F, K192R, L198R; p17: I104V; p24: V11T; rev: A68E; vif: M189T; vpu: -70D"}}, "children": [{"name": "AB049811", "node_attrs": {"div": 0.14131, "accession": "AB049811", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GH"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97GH_AG1"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T23C", "G43A", "C96A", "C151T", "C200T", "T303A", "C456T", "A461C", "A499G", "C513A", "A534G", "A540G", "A541G", "A579G", "G650A", "A654G", "A759T", "T760G", "T771A", "G791A", "C827T", "C872T", "A881G", "G956T", "A968T", "T979C", "T983C", "C1118T", "T1182C", "G1265A", "G1271T", "T1303C", "G1341A", "G1404A", "T1444C", "-1458A", "-1459A", "G1495A", "C1535T", "G1568A", "G1586A", "G1619A", "A1697G", "T1724G", "A1743G", "C1767T", "A1819G", "T1854C", "C1865T", "A1907G", "A1920G", "A1969G", "G1972A", "C1985T", "T1986C", "T2041A", "G2068A", "T2116C", "G2134A", "G2155A", "A2189C", "G2201A", "A2202T", "A2203C", "G2215A", "G2224A", "A2241G", "A2254G", "A2297G", "C2353T", "C2386A", "A2404G", "A2437T", "C2464G", "C2485T", "C2589T", "G2602A", "G2626A", "A2627C", "A2665G", "A2692G", "G2704A", "G2710A", "C2723T", "A2764G", "C2806T", "C2822G", "G2909C", "G2932A", "T2996C", "C3055T", "T3181C", "A3191C", "A3193G", "A3200G", "A3204G", "C3225T", "T3256A", "A3265C", "G3293A", "T3412A", "C3449T", "A3451G", "G3477A", "A3522G", "C3542T", "G3595A", "T3644A", "A3670G", "A3715G", "T3746C", "T3754C", "G3756A", "C3799A", "A3835G", "T4024C", "A4066G", "A4102G", "A4162G", "A4175G", "G4228A", "A4246G", "G4264A", "A4492T", "A4507G", "G4583C", "A4650C", "C4665T", "A4677G", "G4685A", "A4686G", "A4693G", "T4701A", "T4702A", "T4703G", "A4721C", "A4722T", "T4769A", "G4786A", "T4805C", "A4819G", "C4826T", "T4835C", "A4861G", "G4864A", "A4895G", "C4937T", "C4943T", "T4945C", "A4956T", "A4976G", "G4981A", "A4988G", "A4993C", "A5005G", "A5008G", "A5042T", "A5062G", "A5112G", "A5119G", "T5148C", "G5153C", "A5190G", "T5206C", "A5215G", "C5242T", "A5277G", "G5312A", "G5375A", "G5385A", "G5396A", "A5433T", "T5451C", "C5454T", "G5558A", "G5581T", "A5603T", "G5620A", "A5621T", "G5629T", "A5677T", "A5787T", "T5788A", "T5789C", "T5791G", "C5792A", "C5793A", "A5794G", "C5795A", "T5796A", "C5797-", "T5798-", "T5799-", "A5800T", "G5803T", "A5804C", "G5805C", "T5807C", "G5808T", "G5809C", "G5810T", "G5811T", "-5812A", "-5813T", "-5814G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824T", "-5825A", "-5826C", "-5827G", "G5839T", "A5840T", "-5861A", "A5866C", "G5893A", "A5896G", "C5989T", "A6009G", "G6076A", "A6092G", "T6096C", "A6158G", "A6168-", "A6176C", "C6178T", "-6179G", "A6182G", "T6187A", "A6188T", "-6189T", "-6192A", "G6195T", "A6197T", "-6198C", "C6199T", "-6201C", "-6202T", "-6206T", "-6207T", "-6208A", "-6211C", "-6213A", "A6214T", "-6216A", "-6217C", "-6218A", "-6219T", "-6220G", "A6221C", "T6263G", "G6267A", "C6278A", "A6279G", "A6282G", "A6288C", "T6322G", "A6326G", "A6327G", "G6329A", "A6333G", "G6336A", "-6340A", "A6371G", "C6412T", "A6413G", "T6418C", "T6445C", "T6457C", "A6465G", "C6482A", "A6484T", "A6488C", "A6532T", "A6544G", "A6574T", "G6631A", "T6637G", "A6647G", "A6648T", "G6669A", "G6712A", "G6742A", "C6769T", "A6776G", "G6779A", "A6785G", "T6815C", "A6818G", "-6830C", "-6831A", "-6832G", "-6835T", "A6837C", "C6850T", "C6859T", "C6949G", "C6951A", "G6954A", "G6955C", "-6957A", "A6963G", "T6964C", "-6968T", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6974T", "-6975A", "-6976C", "-6977A", "-6978A", "-6979T", "-6980A", "-6981G", "-6982T", "-6985T", "A6987G", "-6994A", "-6995G", "-6996A", "-6997G", "-6998T", "-6999C", "A7005G", "C7014T", "G7072A", "A7097G", "A7107T", "A7151G", "A7152G", "A7158G", "G7177A", "T7180G", "A7345T", "G7366A", "T7433C", "G7450A", "C7463A", "A7471G", "G7533A", "A7572G", "A7589G", "C7603T", "A7629G", "C7690A", "T7774C", "G7790A", "A7818G", "G7846A", "G7868A", "C7878A", "G7902A", "A7918T", "C7960A", "A7964G", "A7992G", "G8006A", "G8008A", "A8023C", "G8055A", "A8080C", "G8093C", "C8145G", "A8151G", "T8159G", "G8181T", "C8213T", "T8239C", "C8251T", "T8290C", "A8297G", "A8303G", "G8304T", "C8323A", "G8329A", "A8338T", "G8349A", "G8356T", "C8382G", "T8384C", "A8386G", "G8393A", "A8409C", "C8413A", "C8415G", "C8425T", "C8440T", "A8455C", "T8480C", "T8501A", "G8570A", "A8584T", "A8744G", "A8784C", "C8794T", "G8799A", "T8831C", "C8873A", "G8905C", "T8915G", "A8924C", "T8935G", "T8946A", "T8947A", "G8971A", "A8991G", "T9012C", "G9015A", "G9016A", "T9017C", "T9018C", "A9042G", "G9049A", "T9108C", "C9181A"], "INT": ["N134D", "D270H"], "RT-p51": ["K32Q", "E36I", "K49R", "S68G", "D123E", "T165I", "P243A", "A272P", "K366Q", "T369A", "E370G", "T377I", "R390S", "A400T"], "RT-p66": ["K32Q", "E36I", "K49R", "S68G", "D123E", "T165I", "P243A", "A272P", "K366Q", "T369A", "E370G", "T377I", "R390S", "A400T", "R461K", "K476R", "H483Y", "L517I", "S554N"], "gp120": ["-3N", "E4N", "N52S", "I80V", "I81T", "N102D", "T104H", "-106A", "-107K", "-109L", "-110T", "-112N", "N113M", "-114Q", "-124G", "L137V", "R138K", "Q142R", "K143R", "I156M", "N158G", "S162K", "I173V", "I187V", "E204G", "P210T", "K212Q", "E240D", "N261K", "K265V", "K307R", "T308A", "E309K", "N311D", "R322G", "-326Q", "N328T", "K361E", "S365R", "T366N", "W367Y", "-368N", "N369R", "-370S", "T371S", "-372N", "-374T", "-375W", "-376N", "-377Y", "-379S", "-381E", "-382S", "-384G", "T387I", "M406I", "I415V", "E418V", "N433G", "N435S"], "gp41": ["L54M", "R77K", "K90R", "T96A", "N109S", "D129E", "D163N", "K172R", "A189T", "T192N", "G200E", "R221G", "D230G", "V235I", "S251N", "V264L", "A281G", "K283R", "W286G", "G293V", "L304F", "A325V", "I332V", "R334V"], "nef": ["G3S", "W5L", "P14A", "Q15R", "Q22R", "T23Q", "P24T", "T28A", "G29I", "A33V", "D38A", "Y81F", "M148L", "A151V", "V153I", "D177E", "R188T", "F191L", "F202N"], "p17": ["E42D", "E55G", "L60I", "T67A", "K69G", "I82V", "I107V"], "p2": ["V7A"], "p24": ["M10W", "S14T", "E75D", "E79D", "V83T", "E180D", "V191A", "A204T", "G225S"], "p6": ["T22A", "S24P", "P30S", "N47S"], "p7": ["R10K"], "pro": ["L19P", "N37D", "K41R", "L63S"], "rev": ["A15T", "K39R", "R53H", "A54T", "I59L", "I78L", "C82S", "S99R", "V104G"], "tat": ["S7N", "K29I", "V69L", "P84Q"], "vif": ["N22H", "H27Y", "I31V", "K34E", "K36R", "F39K", "E45D", "S46C", "D61E", "R67K", "D78G", "K92R", "R93K", "I120T", "I124L", "R132K", "Q136P", "N140S", "K141R", "K159R", "K176E", "Q178R", "S188P"], "vpr": ["Q3R", "F15S", "E17Q", "E29G", "E58G", "V70I", "G94S"], "vpu": ["E5I", "A8S", "T24S", "-69Y", "-71N", "-72I", "-73L", "-74F", "-75N", "D78-", "N79-"]}, "labels": {"aa": "INT: N134D, D270H; RT-p51: K32Q, E36I, K49R, S68G, D123E, T165I, P243A, A272P, K366Q, T369A, E370G, T377I, R390S, A400T; RT-p66: K32Q, E36I, K49R, S68G, D123E, T165I, P243A, A272P, K366Q, T369A, E370G, T377I, R390S, A400T, R461K, K476R, H483Y, L517I, S554N; gp120: -3N, E4N, N52S, I80V, I81T, N102D, T104H, -106A, -107K, -109L, -110T, -112N, N113M, -114Q, -124G, L137V, R138K, Q142R, K143R, I156M, N158G, S162K, I173V, I187V, E204G, P210T, K212Q, E240D, N261K, K265V, K307R, T308A, E309K, N311D, R322G, -326Q, N328T, K361E, S365R, T366N, W367Y, -368N, N369R, -370S, T371S, -372N, -374T, -375W, -376N, -377Y, -379S, -381E, -382S, -384G, T387I, M406I, I415V, E418V, N433G, N435S; gp41: L54M, R77K, K90R, T96A, N109S, D129E, D163N, K172R, A189T, T192N, G200E, R221G, D230G, V235I, S251N, V264L, A281G, K283R, W286G, G293V, L304F, A325V, I332V, R334V; nef: G3S, W5L, P14A, Q15R, Q22R, T23Q, P24T, T28A, G29I, A33V, D38A, Y81F, M148L, A151V, V153I, D177E, R188T, F191L, F202N; p17: E42D, E55G, L60I, T67A, K69G, I82V, I107V; p2: V7A; p24: M10W, S14T, E75D, E79D, V83T, E180D, V191A, A204T, G225S; p6: T22A, S24P, P30S, N47S; p7: R10K; pro: L19P, N37D, K41R, L63S; rev: A15T, K39R, R53H, A54T, I59L, I78L, C82S, S99R, V104G; tat: S7N, K29I, V69L, P84Q; vif: N22H, H27Y, I31V, K34E, K36R, F39K, E45D, S46C, D61E, R67K, D78G, K92R, R93K, I120T, I124L, R132K, Q136P, N140S, K141R, K159R, K176E, Q178R, S188P; vpr: Q3R, F15S, E17Q, E29G, E58G, V70I, G94S; vpu: E5I, A8S, T24S, -69Y, -71N, -72I, -73L, -74F, -75N, D78-, N79-"}}}, {"name": "CRF02_AG_NODE_0000034", "node_attrs": {"div": 0.10674, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A887G", "A978G", "C1136T", "A1607G", "T2479A", "A2572C", "T5807G", "-6169C", "-6179A", "-6192C", "-6202C", "-6206A", "-6211T", "-6217T", "A6800C", "T7095A", "G7657A", "C8242T", "G8276T", "A8424G"], "gp120": ["N111-", "N272G", "T292N", "V414E"], "gp41": ["A325F"], "nef": ["T28E"], "vpu": ["M67R"]}, "labels": {"aa": "gp120: N111-, N272G, T292N, V414E; gp41: A325F; nef: T28E; vpu: M67R"}}, "children": [{"name": "CRF02_AG_NODE_0000035", "node_attrs": {"div": 0.11155, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T531C", "G1301A", "G1694A", "G2683A", "G2710A", "A2839C", "G3220A", "A3251G", "T3644A", "C3773T", "C3994T", "G4105A", "C4270T", "T4738C", "A5005G", "A5086G", "A5094G", "C5221T", "T5384C", "G5558A", "T5614C", "T5687A", "-5812T", "-5817T", "A5828-", "T5829-", "A5830-", "A5831-", "-5861A", "C5958A", "-6164A", "-6165C", "-6170A", "-6171T", "-6172C", "C6241T", "A6251G", "G6253A", "G6311A", "G6329A", "T6395A", "A6773G", "C6826T", "T6849A", "G6935A", "A6937C", "-6974A", "A7160G", "C7161G", "A7162G", "A7164C", "T7408C", "T7609C", "G7720A", "A7807G", "C7984A", "G8105A", "C8425A", "C8552T", "C8590G"], "RT-p66": ["L517I"], "gp120": ["T35K", "M133V", "V153I", "S181T", "K316Q", "I332N", "-382G"], "gp41": ["A268T"], "nef": ["A83G"], "p17": ["S66P"], "rev": ["S86N"], "tat": ["L3P"], "vif": ["N140S", "T170A"], "vpu": ["S3P", "F27Y"]}, "labels": {"aa": "RT-p66: L517I; gp120: T35K, M133V, V153I, S181T, K316Q, I332N, -382G; gp41: A268T; nef: A83G; p17: S66P; rev: S86N; tat: L3P; vif: N140S, T170A; vpu: S3P, F27Y"}}, "children": [{"name": "AY371122", "node_attrs": {"div": 0.14398, "accession": "AY371122", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_0002BBY"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A356G", "T377C", "G455A", "C467T", "T485G", "T486C", "C614A", "A619G", "T655G", "A671G", "A689T", "G690A", "T858C", "G998A", "T1052C", "C1091T", "T1181C", "C1187T", "A1193G", "A1205G", "T1244C", "G1260T", "C1261G", "T1262C", "G1271T", "A1274T", "A1277G", "T1422C", "T1452C", "-1455A", "-1456A", "-1457T", "C1460-", "A1461G", "T1481C", "A1497-", "C1498-", "A1499-", "A1500G", "A1502T", "-1503A", "-1504T", "-1505A", "G1508A", "T1682C", "C1752T", "A1777G", "A1784C", "A1907G", "T2083C", "T2086C", "A2241G", "A2243G", "G2273A", "G2341A", "G2362A", "G2417A", "A2459C", "A2460C", "A2461G", "G2498T", "C2589T", "G2602A", "A2616G", "A2627C", "T2689C", "G2707A", "G2727A", "G2837A", "A2918C", "A2920G", "A2925G", "A2937G", "C2978T", "A3037T", "G3188A", "A3217G", "C3252T", "C3376T", "G3398A", "G3595A", "A3637T", "A3654T", "A3675G", "C3712T", "T3865A", "G3886A", "A3890T", "T3943C", "A3961G", "G4063A", "C4123T", "G4273A", "T4396C", "A4423G", "A4564G", "T4656C", "T4701G", "A4725G", "G4726A", "A4865C", "C4902T", "T4907C", "A4946C", "A4956C", "G4981A", "G4995T", "T5003C", "T5147C", "T5203C", "A5233G", "G5276A", "A5336C", "C5358A", "G5386A", "G5448T", "A5461G", "T5462C", "A5463G", "G5484A", "C5491T", "G5501C", "A5548G", "A5564C", "G5581A", "A5602C", "A5622C", "C5663G", "G5668A", "C5679T", "C5769T", "G5775C", "A5787T", "T5788A", "G5805A", "-5813G", "-5814T", "-5816A", "-5818A", "-5819A", "A5866C", "T5911C", "T5929C", "A5950T", "A6050G", "C6109T", "C6145T", "A6158G", "-6166A", "-6167A", "-6173T", "-6174C", "-6175T", "A6177G", "C6178A", "A6182G", "C6183A", "T6184A", "T6187C", "-6189T", "A6191T", "C6193T", "C6196A", "-6198A", "C6199T", "-6201A", "C6202A", "-6207C", "-6208C", "A6209T", "-6213G", "-6216A", "-6218G", "-6219A", "-6220A", "A6221C", "A6222C", "A6223T", "G6224A", "G6226T", "A6229C", "A6232G", "G6260A", "A6261T", "A6275C", "A6277G", "A6281C", "A6282G", "A6288C", "G6323A", "A6333G", "A6338C", "-6340A", "G6403T", "A6406G", "T6438A", "T6457G", "G6463A", "A6465G", "C6496T", "C6511T", "A6574G", "A6604G", "A6634G", "T6637G", "G6638A", "G6640T", "A6648G", "T6667C", "G6689A", "G6731A", "G6732A", "T6733C", "T6735A", "G6743A", "A6751G", "C6777A", "A6788G", "C6792G", "A6796G", "C6797A", "C6810T", "-6835C", "C6840A", "T6853C", "A6857C", "T6860C", "C6861A", "A6900G", "T6932A", "A6936G", "A6956C", "-6957A", "A6959G", "T6961C", "A6965G", "C6966A", "T6967C", "-6975C", "-6976T", "-6977G", "-6978C", "-6979C", "-6980A", "-6981G", "-6982C", "-6985A", "A6989C", "A7005G", "G7040A", "G7072A", "C7084T", "G7182A", "G7198A", "G7199A", "C7250A", "C7264T", "A7269C", "G7307C", "T7309G", "C7313-", "T7314-", "G7315-", "G7317C", "A7318T", "T7400C", "T7462C", "A7470G", "A7532G", "A7540G", "A7572G", "C7576T", "A7621G", "A7628G", "G7631A", "A7632G", "T7642A", "A7660G", "G7688A", "A7700C", "C7703A", "A7705G", "A7706C", "A7756G", "T7852C", "T7864C", "C7917T", "A7918G", "T7929G", "T7930G", "C7932G", "G8019A", "T8047C", "A8080C", "A8111G", "G8137A", "C8149T", "A8184G", "C8189T", "A8193G", "G8216A", "A8252G", "A8284G", "A8297G", "A8303G", "G8304T", "C8323G", "G8329A", "T8348G", "T8371A", "T8374G", "A8385C", "A8399G", "A8402G", "C8415G", "A8429C", "G8487T", "C8490T", "A8491T", "T8492C", "A8519G", "G8534A", "G8537A", "A8549C", "G8554A", "G8555A", "G8570A", "A8636T"], "INT": ["S39C"], "RT-p51": ["K49R", "I50V", "V60I", "V108I", "K122P", "V135L", "T165I", "K174R", "R211K", "E248N", "K275Q", "K277R", "K281R", "V365I", "T386V", "V435I"], "RT-p66": ["K49R", "I50V", "V60I", "V108I", "K122P", "V135L", "T165I", "K174R", "R211K", "E248N", "K275Q", "K277R", "K281R", "V365I", "T386V", "V435I", "E514D", "Q520L", "E527G"], "gp120": ["-3N", "E4N", "N66D", "N102D", "-106M", "-107K", "N113-", "E125-", "I126-", "K127-", "N128-", "E136I", "K141Q", "K143R", "D157N", "N161S", "S162Q", "E183D", "F195Y", "N201K", "E204G", "N261K", "E262N", "K265R", "G272S", "V279I", "A291T", "G293N", "D294I", "D297N", "K307G", "T308K", "N312D", "T313S", "Q315K", "T319I", "T329K", "N335H", "S336H", "N349S", "S360T", "K361S", "-368H", "-370D", "-372A", "-377S", "-379H", "-381N", "N383-", "V396I", "M406I", "E418D", "T436G", "N437T", "G443E", "D449N", "L466I", "H472P"], "gp41": ["V2L", "L4A", "G5-", "K56R", "R77G", "K90R", "N109D", "D110S", "D113E", "D129N", "N133H", "L134M", "I135L", "S205L", "L209R", "T210S", "S239N", "T270A", "Q294R", "K297R", "D305N", "R317G", "I332V", "R334V"], "nef": ["I10K", "V11G", "I20M", "P25A", "A49S", "H50F", "R71K", "E98D"], "p17": ["D93E", "K95R", "I107R", "A119T"], "p2": ["S10P", "-12V", "I13-"], "p24": ["A177C", "E180D"], "p6": ["L15F", "K33R"], "p7": ["T11V"], "pro": ["N37D"], "rev": ["A15T", "Y28E", "S67P", "I78L", "D88G", "V97M", "Q101*", "T114I"], "tat": ["V4I", "K24N", "K29A", "G42A", "T58A", "Q63P", "V69I", "L74G", "P75A"], "vif": ["F39V", "R47E", "V51A", "R93S", "I124L", "R132K", "A137S", "K167R"], "vpr": ["F15L", "E58K", "Q77H", "G94D"], "vpu": ["E5D", "A19G", "V21I", "E56D", "-69C", "-71N", "-72I", "-73L"]}, "labels": {"aa": "INT: S39C; RT-p51: K49R, I50V, V60I, V108I, K122P, V135L, T165I, K174R, R211K, E248N, K275Q, K277R, K281R, V365I, T386V, V435I; RT-p66: K49R, I50V, V60I, V108I, K122P, V135L, T165I, K174R, R211K, E248N, K275Q, K277R, K281R, V365I, T386V, V435I, E514D, Q520L, E527G; gp120: -3N, E4N, N66D, N102D, -106M, -107K, N113-, E125-, I126-, K127-, N128-, E136I, K141Q, K143R, D157N, N161S, S162Q, E183D, F195Y, N201K, E204G, N261K, E262N, K265R, G272S, V279I, A291T, G293N, D294I, D297N, K307G, T308K, N312D, T313S, Q315K, T319I, T329K, N335H, S336H, N349S, S360T, K361S, -368H, -370D, -372A, -377S, -379H, -381N, N383-, V396I, M406I, E418D, T436G, N437T, G443E, D449N, L466I, H472P; gp41: V2L, L4A, G5-, K56R, R77G, K90R, N109D, D110S, D113E, D129N, N133H, L134M, I135L, S205L, L209R, T210S, S239N, T270A, Q294R, K297R, D305N, R317G, I332V, R334V; nef: I10K, V11G, I20M, P25A, A49S, H50F, R71K, E98D; p17: D93E, K95R, I107R, A119T; p2: S10P, -12V, I13-; p24: A177C, E180D; p6: L15F, K33R; p7: T11V; pro: N37D; rev: A15T, Y28E, S67P, I78L, D88G, V97M, Q101*, T114I; tat: V4I, K24N, K29A, G42A, T58A, Q63P, V69I, L74G, P75A; vif: F39V, R47E, V51A, R93S, I124L, R132K, A137S, K167R; vpr: F15L, E58K, Q77H, G94D; vpu: E5D, A19G, V21I, E56D, -69C, -71N, -72I, -73L"}}}, {"name": "AY371126", "node_attrs": {"div": 0.15391, "accession": "AY371126", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CM_0014BBY"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T357C", "G395T", "G407A", "C435A", "G498T", "A499T", "C513T", "A534G", "A540C", "A563G", "A618C", "A652G", "A666G", "A749T", "T771C", "G791A", "G799A", "G803A", "A815G", "T852A", "G866A", "C917T", "G956A", "A968G", "C974T", "G978A", "T979C", "T1004C", "C1060A", "A1076C", "G1184A", "G1199A", "G1324A", "G1328A", "T1385C", "C1406T", "T1452A", "-1458A", "-1459A", "A1467G", "G1469A", "C1514T", "C1523A", "A1529G", "G1568A", "G1586A", "G1663A", "T1679C", "G1685A", "A1700G", "T1722C", "C1873T", "A1903C", "T2077C", "T2087C", "T2116C", "G2215A", "G2219A", "A2254T", "A2368G", "C2452T", "A2459G", "C2485T", "G2518A", "A2545C", "G2548A", "A2551G", "G2648A", "G2663A", "A2698G", "T2708C", "C2818A", "C2960T", "T2968C", "T3045C", "C3055A", "C3067A", "A3099G", "A3103G", "G3165A", "G3169A", "C3232T", "A3233G", "G3250A", "G3279A", "G3337A", "A3397C", "T3399C", "A3406T", "A3442G", "G3463A", "A3601C", "C3649T", "A3667G", "A3685G", "G3717A", "A3760G", "G3866A", "A3880G", "G3916A", "G3929A", "C3932A", "A3944G", "T3962C", "A3985G", "A3988G", "T4024C", "C4042T", "C4138T", "G4156A", "G4228A", "G4244A", "T4276G", "G4459A", "A4519G", "G4531A", "G4549A", "A4581G", "T4585C", "A4632C", "A4650C", "T4682A", "A4693G", "G4694A", "G4695C", "T4697G", "G4737A", "G4774T", "A4775G", "T4799C", "G4802A", "T4805A", "A4806C", "A4815C", "G4816A", "A4819C", "C4820T", "G4829A", "A4855G", "G4856A", "A4862G", "A4878G", "C4889T", "C4899A", "A4900G", "G4904A", "C4910T", "C4937A", "A4951G", "A4976C", "G5018A", "A5033T", "C5034T", "A5045G", "G5087T", "G5131A", "G5146A", "C5168T", "C5186A", "A5187T", "A5215T", "A5227C", "C5237T", "G5246A", "A5248C", "A5251C", "G5272A", "G5276C", "A5285C", "G5312A", "G5359C", "C5406A", "T5462A", "G5534A", "C5559T", "T5568C", "A5575T", "G5607A", "C5641A", "G5675A", "A5711G", "G5755A", "T5781A", "G5783A", "G5784A", "C5795A", "T5796G", "G5805T", "G5807A", "G5808C", "G5809A", "G5811T", "-5813T", "-5814G", "-5816T", "-5818G", "-5819T", "-5820C", "T5832-", "A5833-", "T5834-", "T5835-", "T5836-", "T5837-", "G5838-", "G5839C", "G5845A", "T5851G", "-5862C", "-5863A", "-5864G", "A5866T", "A5868-", "T5869-", "T5870-", "G5881A", "G5954A", "T5956G", "C6023T", "A6024T", "G6029A", "T6151C", "-6166C", "-6167T", "A6168C", "C6169T", "-6173A", "-6174G", "-6175C", "A6180G", "T6184C", "A6186G", "-6189A", "C6192G", "-6198T", "G6200A", "-6201G", "A6204T", "C6205T", "-6207G", "-6208G", "C6210G", "A6212G", "-6213A", "-6216T", "T6217G", "G6225A", "T6252C", "T6263A", "A6275G", "C6278A", "T6285A", "T6298C", "T6315A", "A6319G", "A6330G", "G6336A", "A6339G", "-6340T", "G6368A", "A6374G", "G6379A", "G6547A", "G6572A", "A6577G", "G6581A", "C6607T", "G6626A", "A6636C", "A6668G", "T6694C", "A6728T", "G6742A", "G6755T", "G6774C", "C6790A", "C6824T", "-6830A", "-6831A", "-6832G", "-6835T", "A6836G", "C6850A", "A6854G", "A6858G", "T6875G", "G6878A", "T6896G", "-6957T", "A6963G", "T6964C", "-6968T", "-6969G", "-6970G", "-6971A", "-6972A", "-6973T", "-6975G", "-6976C", "T6983-", "C6984-", "A6987G", "C6988T", "A6990G", "C6993G", "-6994T", "-6995A", "-6996C", "-6997A", "-6998G", "-6999G", "A7000G", "A7001T", "A7002C", "T7003A", "C7008T", "G7056A", "C7089G", "G7102A", "G7106A", "A7111G", "A7138G", "A7148G", "A7152G", "T7153A", "A7154G", "A7155G", "T7156G", "T7165C", "G7168A", "G7184A", "G7188A", "G7190A", "G7197A", "A7231G", "A7265T", "G7285A", "G7290A", "C7313A", "G7366A", "G7428A", "T7433C", "G7441A", "G7534A", "C7561T", "G7581A", "A7626T", "C7655T", "C7690A", "A7691G", "T7692C", "C7703T", "T7715G", "G7729A", "G7769A", "C7770A", "G7790A", "T7801C", "A7818G", "G7831A", "G7835A", "G7841A", "A7873G", "A7877G", "C7926T", "C7936T", "C7960A", "A7962G", "G7995A", "C8005A", "G8008A", "G8030A", "C8031A", "G8036A", "C8037T", "G8061T", "C8065T", "G8110A", "T8153C", "T8164C", "C8172T", "T8182C", "A8188G", "T8205C", "A8222G", "A8271G", "T8290C", "G8292T", "C8293T", "G8304C", "C8321T", "C8342T", "G8354A", "G8376A", "T8414A", "A8446G", "T8456A", "T8483C", "C8490G", "T8492A", "G8499T", "A8503C", "C8510T", "A8525C", "C8531T", "G8558A", "C8607T", "A8608T", "C8648T", "C8651T", "A8652G", "G8654T", "C8661A", "C8676T", "C8684T", "C8688A"], "INT": ["V31I", "G52R", "Q53K", "S57G", "E157K", "D167E", "K269R", "D286A"], "RT-p51": ["E42K", "E53D", "K122E", "L178M", "D185N", "G190R", "E248D", "V317A", "D320E", "D324E", "D335G", "R357K", "I380V", "T386A", "R395K", "W414*", "V435A"], "RT-p66": ["E42K", "E53D", "K122E", "L178M", "D185N", "G190R", "E248D", "V317A", "D320E", "D324E", "D335G", "R357K", "I380V", "T386A", "R395K", "W414*", "V435A", "G541E"], "gp120": ["-3T", "E4D", "-5M", "L6-", "D34K", "H57F", "E59K", "D105S", "-106I", "-107S", "-109S", "-110T", "-111S", "-112N", "N113S", "-114S", "-115I", "-116S", "-117I", "-118R", "-119S", "-120E", "-121M", "-123K", "-124E", "V133A", "L137I", "K141E", "Q142K", "V144E", "S145Y", "V154E", "N159S", "S160N", "A172T", "T174A", "E240K", "V243M", "V258I", "N261T", "N292S", "D294A", "A301S", "K307A", "N312K", "H324Y", "-326K", "N328D", "N332K", "T334A", "N335S", "L341V", "E342K", "F348V", "K361N", "-368I", "-370S", "-372W", "-374T", "N378-", "T380-", "N383S", "-384D", "T385I", "R401K", "P412R", "E418N", "N432D", "N433R", "N434G", "T436S", "N437G", "G444R", "G445E", "D446N", "R448K", "T471S", "G479E"], "gp41": ["L4M", "S42N", "C93Y", "Y108F", "D129E", "I130A", "S138A", "A156K", "D163N", "K172R", "M176I", "V178I", "G180S", "T192A", "T208I", "E220G", "R231K", "A243K", "A245I", "C253F", "Y284H", "S290L", "I301T", "I307V", "Q323R", "R330L", "R334T", "L340F"], "nef": ["G12R", "Q15K", "Q35R", "D38E", "H50E", "A53S", "D54A", "Q61H", "H89F", "K104D", "Q107K", "H116N"], "p1": ["G11E"], "p17": ["L34I", "E55L", "T67A", "K69Q", "K95Q", "E106G", "S111G"], "p2": ["Q8T", "Q9N", "S10-", "N11-"], "p24": ["S14P", "W23*", "S41T", "V83T", "T110N", "C198Y"], "p6": ["S24P"], "p7": ["M1V"], "pro": ["E35D"], "rev": ["D7N", "A15I", "I18T", "K20N", "P30S", "R53S", "A54T", "S61K", "C63Y", "L73F", "D88N", "I102T", "S106P", "S112P", "T114A"], "tat": ["R53K", "N67Y", "P73S", "T76I", "P84Q", "K85E"], "vif": ["M16L", "N22H", "K36R", "D37Q", "V51T", "R63M", "H73Q", "T74P", "R77Q", "D78A", "K90R", "I98V", "Q105R", "D117E", "K122R", "R130S", "K167S", "G182D", "R187H"], "vpr": ["H28I", "H45Y", "E48N", "E58Q", "I61L", "V70I", "R85P"], "vpu": ["L12I", "W23*", "K35R", "A50T", "T63K", "E66-", "R67-", "G68-", "D70-", "D78-", "N79-", "L82V"]}, "labels": {"aa": "INT: V31I, G52R, Q53K, S57G, E157K, D167E, K269R, D286A; RT-p51: E42K, E53D, K122E, L178M, D185N, G190R, E248D, V317A, D320E, D324E, D335G, R357K, I380V, T386A, R395K, W414*, V435A; RT-p66: E42K, E53D, K122E, L178M, D185N, G190R, E248D, V317A, D320E, D324E, D335G, R357K, I380V, T386A, R395K, W414*, V435A, G541E; gp120: -3T, E4D, -5M, L6-, D34K, H57F, E59K, D105S, -106I, -107S, -109S, -110T, -111S, -112N, N113S, -114S, -115I, -116S, -117I, -118R, -119S, -120E, -121M, -123K, -124E, V133A, L137I, K141E, Q142K, V144E, S145Y, V154E, N159S, S160N, A172T, T174A, E240K, V243M, V258I, N261T, N292S, D294A, A301S, K307A, N312K, H324Y, -326K, N328D, N332K, T334A, N335S, L341V, E342K, F348V, K361N, -368I, -370S, -372W, -374T, N378-, T380-, N383S, -384D, T385I, R401K, P412R, E418N, N432D, N433R, N434G, T436S, N437G, G444R, G445E, D446N, R448K, T471S, G479E; gp41: L4M, S42N, C93Y, Y108F, D129E, I130A, S138A, A156K, D163N, K172R, M176I, V178I, G180S, T192A, T208I, E220G, R231K, A243K, A245I, C253F, Y284H, S290L, I301T, I307V, Q323R, R330L, R334T, L340F; nef: G12R, Q15K, Q35R, D38E, H50E, A53S, D54A, Q61H, H89F, K104D, Q107K, H116N; p1: G11E; p17: L34I, E55L, T67A, K69Q, K95Q, E106G, S111G; p2: Q8T, Q9N, S10-, N11-; p24: S14P, W23*, S41T, V83T, T110N, C198Y; p6: S24P; p7: M1V; pro: E35D; rev: D7N, A15I, I18T, K20N, P30S, R53S, A54T, S61K, C63Y, L73F, D88N, I102T, S106P, S112P, T114A; tat: R53K, N67Y, P73S, T76I, P84Q, K85E; vif: M16L, N22H, K36R, D37Q, V51T, R63M, H73Q, T74P, R77Q, D78A, K90R, I98V, Q105R, D117E, K122R, R130S, K167S, G182D, R187H; vpr: H28I, H45Y, E48N, E58Q, I61L, V70I, R85P; vpu: L12I, W23*, K35R, A50T, T63K, E66-, R67-, G68-, D70-, D78-, N79-, L82V"}}}]}, {"name": "CRF02_AG_NODE_0000036", "node_attrs": {"div": 0.10988, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C467T", "G645T", "T771G", "A1079G", "G1418A", "A2056G", "G2273A", "G3477A", "G4063A", "A4696G", "A5051C", "C5678G", "G5729A", "-5824T", "-5825A", "-5826T", "-5827G", "-5864G", "C6067A", "-6165A", "-6167G", "-6170T", "-6218G", "-6219A", "T6325A", "C6499T", "A6605G", "A6668G", "A6809G", "-6977G", "-6978C", "-6985A", "-6994A", "-6995G", "-6996G", "-6997G", "-6998T", "G7040A", "C7089G", "C7268A", "G7631A", "G7640A", "G8019A", "T8092C", "G8093A", "T8171G", "T8595G"], "RT-p51": ["V60I"], "RT-p66": ["V60I", "R461K"], "gp120": ["N71K", "-115S", "N251D", "-370N", "V396I", "P412R", "H472R"], "gp41": ["D110N", "V264I", "S290A"], "nef": ["F85V"], "p17": ["V104L"], "p24": ["S14A"], "rev": ["C82H", "I108S"], "tat": ["N61S"], "vif": ["D37G"], "vpu": ["T24S", "-76I", "-77L"]}, "labels": {"aa": "RT-p51: V60I; RT-p66: V60I, R461K; gp120: N71K, -115S, N251D, -370N, V396I, P412R, H472R; gp41: D110N, V264I, S290A; nef: F85V; p17: V104L; p24: S14A; rev: C82H, I108S; tat: N61S; vif: D37G; vpu: T24S, -76I, -77L"}}, "children": [{"name": "AY371140", "node_attrs": {"div": 0.14245000000000002, "accession": "AY371140", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "CM"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CM_1677LE"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C393A", "A461C", "A500C", "C513T", "C558A", "G629A", "A661C", "A762G", "C763T", "A881G", "A1025G", "C1060A", "A1067G", "G1134A", "T1229C", "G1301A", "T1422C", "G1443A", "A1448G", "-1455A", "-1456A", "-1457T", "C1460-", "G1487A", "G1495A", "G1508A", "G1543A", "C1615A", "A1642G", "A1715G", "G1727A", "G1731A", "-1746T", "-1747C", "-1748C", "T1749G", "C1751T", "T1754G", "C1756A", "A1758G", "A1762C", "A1766G", "G1780A", "C1782T", "G1845A", "C1913T", "A2112C", "T2116C", "A2227G", "C2281T", "T2449C", "A2479G", "G2498T", "G2518A", "T2521C", "C2533T", "A2615G", "G2626A", "T2644C", "G2705A", "A2716C", "G2725A", "G2727A", "A2734G", "A2755G", "T2758C", "C2806T", "C2885T", "A2925G", "C2944T", "A2975C", "G3016A", "G3071A", "A3163G", "G3166A", "A3199G", "A3200G", "T3207C", "C3225T", "A3292G", "G3340A", "T3380C", "C3391A", "G3402A", "A3454G", "A3524G", "C3542T", "G3556A", "A3565G", "A3568G", "G3630A", "T3645C", "A3651G", "C3682T", "A3739G", "A3772G", "A3796G", "A3862G", "G3878C", "A3955G", "A4045G", "T4234C", "A4417G", "A4423G", "C4428T", "C4569T", "C4652T", "T4703G", "A4751G", "G4766A", "T4769G", "T4776C", "T4835G", "G4870C", "A4993C", "G5036A", "T5043C", "G5060A", "A5086G", "A5094G", "A5112G", "G5143A", "A5159G", "C5214A", "A5215G", "A5233G", "T5263C", "T5292C", "A5293G", "T5356C", "G5361A", "A5364G", "A5544C", "G5561A", "G5594A", "A5602T", "G5607A", "C5611A", "G5709A", "A5760G", "G5784A", "G5815-", "A5830G", "A5831C", "C5887T", "G5907A", "G5917A", "G5954A", "A5955G", "C5958A", "C5974T", "A6001G", "A6132C", "T6148C", "-6164T", "-6166T", "A6176-", "C6178T", "T6181C", "A6182C", "T6184C", "-6189A", "A6194T", "G6195C", "C6196T", "-6198C", "G6200A", "-6201A", "A6204G", "-6207A", "-6208C", "C6210T", "T6211A", "A6212T", "-6213C", "A6214T", "-6216G", "-6220C", "A6222T", "A6223G", "G6224C", "G6225C", "C6241T", "G6253A", "A6268G", "T6287C", "G6290T", "A6316G", "A6318C", "A6326G", "A6327G", "A6330C", "T6331A", "A6335G", "G6336A", "A6339G", "-6340T", "C6364A", "A6420T", "T6457G", "G6464A", "C6483T", "A6488C", "A6578G", "A6622C", "T6627C", "A6635G", "G6638A", "A6654G", "A6659G", "C6660T", "G6689A", "G6732A", "A6773G", "C6792G", "C6824A", "A6825C", "C6826A", "A6833-", "A6834-", "C6840A", "A6854G", "C6862A", "G6935A", "-6957G", "T6961C", "A6965G", "C6966A", "T6967C", "-6974A", "-6975C", "-6976T", "-6979C", "-6980A", "-6981G", "-6982C", "A6989C", "-6999T", "G7004A", "G7056A", "C7108A", "T7130C", "A7149G", "A7158G", "A7219G", "A7261C", "T7270G", "A7375G", "A7402G", "T7408C", "A7492G", "A7570G", "C7590A", "A7594G", "C7603T", "T7625C", "A7626T", "A7628G", "T7642G", "C7645T", "C7690A", "A7701G", "T7708C", "G7717A", "A7741G", "C7747A", "G7769A", "A7799C", "T7813C", "A7837G", "T7852C", "C7874T", "A7938G", "A7964G", "G7976A", "C7984A", "C8005A", "A8018G", "A8032G", "A8051C", "G8105A", "G8114C", "A8128G", "A8130G", "T8182G", "A8188G", "A8196G", "G8216A", "C8232T", "G8245C", "T8256C", "T8276C", "T8310C", "G8330T", "C8342T", "A8385C", "G8388A", "C8415G", "C8425A", "A8426G", "C8490A", "A8491C", "T8492C", "C8494G", "A8503C", "G8529A", "A8530G", "G8554C", "A8576C", "C8590A", "T8594G", "C8597T", "C8669T", "T8700A"], "INT": ["E35Q", "I60M", "T218I", "A265V"], "RT-p51": ["E6A", "V135L", "K174E", "L178M", "E204K", "E207D", "R211K", "K277R", "T294P", "V326I", "T369A", "V371A", "T377I", "D432E", "G436E"], "RT-p66": ["E6A", "V135L", "K174E", "L178M", "E204K", "E207D", "R211K", "K277R", "T294P", "V326I", "T369A", "V371A", "T377I", "D432E", "G436E", "T477A", "H483Y", "R512K", "L517S", "N519S"], "gp120": ["-5N", "R18K", "D34S", "T35K", "K93T", "T104Y", "-106Y", "-107N", "-109N", "-110T", "-111S", "-112T", "-114S", "-116S", "-117D", "-118M", "-119P", "M133I", "S145H", "A146S", "Q155P", "D157E", "N158G", "N159A", "S160N", "N161D", "Y189F", "N201K", "E204K", "P210L", "K212Q", "I242V", "V258A", "N261D", "E262K", "N267S", "T269V", "V279I", "A291T", "N292D", "G293D", "D294I", "K307G", "T313S", "K316Q", "T319A", "H324T", "N327-", "T329K", "T334A", "-368S", "T371D", "S373-", "-374T", "-375A", "-376S", "-377S", "-379H", "-381G", "-382L", "-384N", "R401K", "N432S", "N435S", "R472K"], "gp41": ["I24M", "T96N", "Y108L", "N109D", "D113K", "D129E", "N133S", "D148E", "A156T", "N166H", "L191F", "H212R", "R221G", "G225R", "S239D", "A268T", "V271L", "L277S", "N298S", "D305N", "A310V", "W314C", "V318A", "F325L", "I336T", "A343S"], "nef": ["V16I", "P25A", "H50T", "T51S", "D54A", "D63S", "R71T", "A83E", "F120I"], "p1": ["K4R"], "p17": ["E42D", "E55D", "L75I", "N109T"], "p2": ["V7I"], "p24": ["T11V", "T110N", "V135I"], "p6": ["L15F", "G18R", "S24A", "-26Q", "K27E", "Q28P", "G34E"], "p7": ["R10K", "R26K", "T50N"], "pro": ["G16E", "P39S"], "rev": ["E10A", "V16I", "K39R", "R43K", "R53S", "E57G", "T62A", "E68A", "S86N", "C89S", "T94A", "S112A", "T114A"], "tat": ["K29I", "R62H", "T77A"], "vif": ["F39L", "D61E", "H83Q", "S95T", "Q136P", "K167R", "T170A", "K176E", "S186N"], "vpr": ["Q3R", "T19A", "P37Q", "I63T", "I84T", "G86R", "R87G"], "vpu": ["Q2K", "R41K", "-69Y", "-75A"]}, "labels": {"aa": "INT: E35Q, I60M, T218I, A265V; RT-p51: E6A, V135L, K174E, L178M, E204K, E207D, R211K, K277R, T294P, V326I, T369A, V371A, T377I, D432E, G436E; RT-p66: E6A, V135L, K174E, L178M, E204K, E207D, R211K, K277R, T294P, V326I, T369A, V371A, T377I, D432E, G436E, T477A, H483Y, R512K, L517S, N519S; gp120: -5N, R18K, D34S, T35K, K93T, T104Y, -106Y, -107N, -109N, -110T, -111S, -112T, -114S, -116S, -117D, -118M, -119P, M133I, S145H, A146S, Q155P, D157E, N158G, N159A, S160N, N161D, Y189F, N201K, E204K, P210L, K212Q, I242V, V258A, N261D, E262K, N267S, T269V, V279I, A291T, N292D, G293D, D294I, K307G, T313S, K316Q, T319A, H324T, N327-, T329K, T334A, -368S, T371D, S373-, -374T, -375A, -376S, -377S, -379H, -381G, -382L, -384N, R401K, N432S, N435S, R472K; gp41: I24M, T96N, Y108L, N109D, D113K, D129E, N133S, D148E, A156T, N166H, L191F, H212R, R221G, G225R, S239D, A268T, V271L, L277S, N298S, D305N, A310V, W314C, V318A, F325L, I336T, A343S; nef: V16I, P25A, H50T, T51S, D54A, D63S, R71T, A83E, F120I; p1: K4R; p17: E42D, E55D, L75I, N109T; p2: V7I; p24: T11V, T110N, V135I; p6: L15F, G18R, S24A, -26Q, K27E, Q28P, G34E; p7: R10K, R26K, T50N; pro: G16E, P39S; rev: E10A, V16I, K39R, R43K, R53S, E57G, T62A, E68A, S86N, C89S, T94A, S112A, T114A; tat: K29I, R62H, T77A; vif: F39L, D61E, H83Q, S95T, Q136P, K167R, T170A, K176E, S186N; vpr: Q3R, T19A, P37Q, I63T, I84T, G86R, R87G; vpu: Q2K, R41K, -69Y, -75A"}}}, {"name": "AB286855", "node_attrs": {"div": 0.15153, "accession": "AB286855", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GH"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03GH181AG"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A49G", "A133T", "C155G", "-167A", "G205A", "A263G", "G354A", "G365A", "A369C", "A388G", "C435T", "C456T", "A499G", "A509G", "A530G", "A541G", "T571A", "C596T", "C614A", "A644G", "A654G", "C707T", "-711A", "-712G", "-719C", "C722T", "A759T", "T760G", "G806A", "T808C", "A820G", "C827T", "T852A", "A869G", "T936C", "G956A", "A968C", "T979C", "A989G", "T992A", "A1088C", "T1094C", "G1173A", "T1174C", "G1260T", "A1263T", "A1292T", "A1361T", "T1362C", "G1404A", "T1427C", "T1444C", "-1458A", "-1459A", "G1469A", "G1474A", "G1586A", "T1613C", "A1656T", "G1657A", "T1682C", "T1724A", "T1741C", "C1752T", "T1754A", "C1831T", "G1839A", "C1864T", "A1907G", "G1968A", "G1981T", "A2007G", "C2011T", "A2018T", "A2026G", "A2032G", "T2104C", "C2149T", "G2155A", "A2197G", "A2203G", "A2210T", "C2211T", "G2215A", "G2224A", "A2254G", "A2297G", "T2323C", "G2362A", "C2452T", "T2453C", "G2539A", "C2596A", "G2602A", "A2617C", "A2627T", "G2632A", "C2635A", "T2779G", "C2828A", "A2829C", "A2842G", "G2843A", "C2978T", "C3100T", "A3115G", "G3127A", "A3145G", "C3175T", "A3193G", "G3206T", "G3211A", "G3221T", "A3226T", "G3250A", "G3279A", "T3331C", "A3334G", "T3399C", "T3414A", "G3427A", "A3457G", "C3533T", "T3544C", "T3559C", "A3592C", "G3631A", "A3637G", "A3684G", "C3692T", "G3694A", "T3730C", "C3773T", "G3859A", "A3871G", "C3892T", "T3909A", "A3919G", "T3990C", "A4078T", "G4105A", "A4112G", "A4186G", "T4396C", "G4549A", "A4608G", "T4676C", "T4691A", "G4694A", "G4774A", "A4854T", "A4855G", "C4939A", "G4968T", "A4976T", "G4982T", "G5018A", "A5021G", "A5042T", "G5090A", "C5152T", "A5215C", "A5227C", "C5237T", "A5268C", "A5293T", "A5336C", "G5386A", "G5418A", "A5433C", "G5444A", "T5462A", "G5599A", "A5603T", "A5621C", "T5686C", "A5728C", "T5736A", "A5787C", "T5788A", "T5789C", "T5791G", "C5792A", "C5793A", "A5794G", "C5795A", "T5796A", "A5800-", "T5801-", "G5802-", "G5803T", "G5805C", "G5807C", "G5808C", "G5809C", "G5810T", "-5812T", "-5813T", "-5814G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5857G", "A5867G", "T5911C", "G5948A", "T5980C", "A6016G", "A6022G", "A6044C", "G6076T", "A6087C", "C6109T", "G6121A", "T6155C", "-6164C", "-6166A", "-6171T", "-6172T", "-6173A", "-6174A", "-6175T", "A6177G", "A6179T", "C6183G", "-6189C", "A6191T", "C6193T", "A6194C", "A6197G", "-6198A", "C6199A", "-6201T", "-6207C", "-6208A", "-6213T", "A6215T", "-6216C", "-6220G", "A6261T", "A6276C", "G6284A", "A6288C", "G6303A", "T6322G", "A6324G", "A6333G", "A6338C", "-6340G", "T6343C", "G6345T", "G6346A", "C6375A", "T6395A", "G6403A", "A6573G", "A6577C", "G6581A", "G6611A", "A6616G", "C6618A", "C6641A", "A6648G", "A6649G", "A6659T", "C6673T", "A6679T", "A6683C", "A6685G", "T6694A", "C6729G", "A6754G", "G6774A", "C6777A", "A6788G", "A6789C", "A6798G", "C6800A", "C6810A", "C6812A", "A6821C", "-6830A", "-6831G", "-6832T", "-6835C", "A6836G", "T6849A", "C6850T", "T6860C", "C6861A", "A6865C", "G6894C", "G6905A", "A6926T", "A6937C", "A6956C", "-6957C", "T6958C", "T6964C", "-6979A", "-6980G", "-6981A", "-6982G", "C6988T", "A6990G", "-6999C", "C7006G", "C7019A", "G7072A", "C7088A", "C7108T", "C7127A", "A7155G", "A7160G", "C7161G", "A7164C", "G7168A", "C7170T", "T7255A", "G7256T", "C7267T", "A7269G", "T7270A", "G7289C", "G7290A", "A7299G", "A7312C", "G7322T", "C7324A", "C7328A", "T7337C", "A7373T", "T7403C", "G7426A", "G7477A", "A7523G", "C7623G", "T7627C", "C7658G", "A7676G", "G7677A", "C7684T", "A7706C", "A7711G", "T7715G", "G7720A", "G7735T", "A7796T", "A7800G", "T7801A", "G7862A", "A7877G", "A7918T", "A7931C", "C7936T", "A7938T", "C7999G", "A8002G", "A8011C", "T8047C", "C8048T", "G8055A", "C8112T", "T8164C", "T8182C", "G8194A", "A8196T", "A8208G", "C8251T", "A8264C", "A8282C", "T8287C", "G8292T", "C8321T", "C8323A", "G8375A", "G8393A", "A8400C", "C8412G", "G8424C", "A8455C", "G8487T", "T8495A", "G8537T", "G8558A", "T8567A", "T8585C", "T8701A", "A8708T", "A8739C", "G8786A", "G8796A", "A8797C", "G8798A", "A8812C", "A8827G", "T8847A", "G8852A", "A8904T", "G8905A", "A8922C", "C8928A", "G8933A", "T8935A", "T8939C", "C8960T", "G8971C", "G8977A", "A8978C", "C8979A", "T9018G", "T9051A", "A9128G", "A9134G"], "INT": ["L45Q", "I72T", "I113V", "D278G"], "RT-p51": ["T39L", "S68G", "K174N", "Q245T", "D250N", "V371L", "A376S", "R395K", "V435A", "F440Y"], "RT-p66": ["T39L", "S68G", "K174N", "Q245T", "D250N", "V371L", "A376S", "R395K", "V435A", "F440Y", "H480Y", "K530R"], "gp120": ["N1K", "-5D", "A32T", "I56M", "K64Q", "E74D", "E78A", "T104Q", "-106F", "N108-", "-114V", "-116Y", "-117S", "-118N", "-119T", "-120S", "-121R", "-122E", "-123K", "-124G", "E136V", "K141T", "V144M", "R150K", "I156M", "D157G", "N159D", "N161S", "S162Q", "R164I", "T174K", "S181T", "E240G", "E241D", "V243M", "A253T", "T255N", "P263T", "K265R", "T269S", "K277Q", "N292R", "T308K", "N312A", "Q315R", "T319E", "Q320K", "K323Q", "-326S", "N328D", "I332N", "S336H", "S347T", "G351R", "N358Y", "K361D", "-368P", "-372A", "-374N", "-375E", "N378-", "T380-", "N383-", "Q389K", "M406I", "E418D", "L425I", "N433S", "N434A", "T436G", "N437T", "T439I", "V468L", "G479Q", "K482R"], "gp41": ["V7L", "L9I", "I24L", "R74G", "T107S", "D113N", "Q119E", "S125D", "I135L", "S138A", "K144N", "T165S", "N166R", "V187I", "T192A", "T210P", "H212L", "D232E", "S239N", "S251N", "T270I", "N298I", "N302S", "I321L", "R330L"], "nef": ["Q15K", "I20L", "E28P", "D38A", "A49S", "E65D", "F120Y", "T133P", "M148I", "E152T", "N157T", "N162S", "C169S", "R188Y", "I194L", "R198K"], "p1": ["S9Y"], "p17": ["V7I", "K12Q", "K18R", "E55G", "K69R", "F79Y", "D93E", "I107V", "-126S"], "p2": ["V7A"], "p24": ["M10W", "V26A", "K30R", "S41T", "E79D", "V83A", "H87Q", "V148T", "A177S", "T178S", "E187D", "G225S"], "p6": ["I21T", "S51L"], "p7": ["M1I", "R3K"], "pro": ["R14K", "N37D", "R57K", "Q61H", "K70R", "T74S"], "rev": ["Y28S", "P30S", "Q51E", "I52V", "I55L", "S67L", "S106P", "S112P", "E116N"], "tat": ["V4I", "S23N", "L74F", "T76I", "T77S"], "vif": ["M8V", "R63K", "K90W", "S118Y", "V128L", "R130S", "R132S", "T189M"], "vpr": ["H45Y", "E55A", "Q77H", "G94D"], "vpu": ["E5A", "F27L", "R41Q", "E60D", "L61T", "S62E", "T63E", "M65Y", "E66T", "R67L", "G68L", "D70E", "-71M", "-72G", "-73Y", "-74D", "-75N"]}, "labels": {"aa": "INT: L45Q, I72T, I113V, D278G; RT-p51: T39L, S68G, K174N, Q245T, D250N, V371L, A376S, R395K, V435A, F440Y; RT-p66: T39L, S68G, K174N, Q245T, D250N, V371L, A376S, R395K, V435A, F440Y, H480Y, K530R; gp120: N1K, -5D, A32T, I56M, K64Q, E74D, E78A, T104Q, -106F, N108-, -114V, -116Y, -117S, -118N, -119T, -120S, -121R, -122E, -123K, -124G, E136V, K141T, V144M, R150K, I156M, D157G, N159D, N161S, S162Q, R164I, T174K, S181T, E240G, E241D, V243M, A253T, T255N, P263T, K265R, T269S, K277Q, N292R, T308K, N312A, Q315R, T319E, Q320K, K323Q, -326S, N328D, I332N, S336H, S347T, G351R, N358Y, K361D, -368P, -372A, -374N, -375E, N378-, T380-, N383-, Q389K, M406I, E418D, L425I, N433S, N434A, T436G, N437T, T439I, V468L, G479Q, K482R; gp41: V7L, L9I, I24L, R74G, T107S, D113N, Q119E, S125D, I135L, S138A, K144N, T165S, N166R, V187I, T192A, T210P, H212L, D232E, S239N, S251N, T270I, N298I, N302S, I321L, R330L; nef: Q15K, I20L, E28P, D38A, A49S, E65D, F120Y, T133P, M148I, E152T, N157T, N162S, C169S, R188Y, I194L, R198K; p1: S9Y; p17: V7I, K12Q, K18R, E55G, K69R, F79Y, D93E, I107V, -126S; p2: V7A; p24: M10W, V26A, K30R, S41T, E79D, V83A, H87Q, V148T, A177S, T178S, E187D, G225S; p6: I21T, S51L; p7: M1I, R3K; pro: R14K, N37D, R57K, Q61H, K70R, T74S; rev: Y28S, P30S, Q51E, I52V, I55L, S67L, S106P, S112P, E116N; tat: V4I, S23N, L74F, T76I, T77S; vif: M8V, R63K, K90W, S118Y, V128L, R130S, R132S, T189M; vpr: H45Y, E55A, Q77H, G94D; vpu: E5A, F27L, R41Q, E60D, L61T, S62E, T63E, M65Y, E66T, R67L, G68L, D70E, -71M, -72G, -73Y, -74D, -75N"}}}]}]}]}]}, {"name": "CRF02_AG_NODE_0000037", "node_attrs": {"div": 0.10062, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["-1459A", "G2727A", "A5112G", "A5215G", "T5614C", "A6338-", "G6464A", "G6669A", "A6805G", "A6986-", "C7590A", "G7846A", "G8814A", "T8915A"], "RT-p51": ["R211K"], "RT-p66": ["R211K"], "gp120": ["-105N", "N161S", "E309D", "N378-", "-384D"], "gp41": ["L54M", "T96N"], "nef": ["R188S", "I194V"], "vif": ["K176E"], "vpr": ["Q3R"], "vpu": ["S3P"]}, "labels": {"aa": "RT-p51: R211K; RT-p66: R211K; gp120: -105N, N161S, E309D, N378-, -384D; gp41: L54M, T96N; nef: R188S, I194V; vif: K176E; vpr: Q3R; vpu: S3P"}}, "children": [{"name": "CRF02_AG_NODE_0000038", "node_attrs": {"div": 0.10725, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A166G", "C1136T", "C1187T", "G1328A", "T1329A", "G1424A", "A1448-", "C1571T", "-1747C", "-1748C", "G1845A", "A1867T", "G2074A", "A2293G", "C2485T", "G2548A", "T2735C", "T3049C", "A3097G", "C4072T", "A4159G", "G4637A", "G4689A", "G4695A", "T4697C", "C4803A", "G4949A", "A4950C", "C5062A", "A5555C", "G5594A", "A5602G", "C5655T", "T5687A", "G6076A", "C6183G", "T6263C", "A6288C", "T6395A", "G6634A", "G6712A", "G6742A", "T6829C", "A6841C", "-6971A", "G7040A", "A7108G", "T7130C", "G7147A", "C7171T", "T7192C", "C7267T", "T7757C", "G7873A", "A8080C", "C8323T", "G8499C", "T8993C", "G8994A"], "INT": ["D288N"], "RT-p51": ["F214L"], "RT-p66": ["F214L"], "gp120": ["N1K", "T104S", "Y145S", "S181T", "E204K", "V396I"], "nef": ["E18D", "A53P", "E158K"], "p24": ["S200T"], "pro": ["G16E"], "rev": ["I78L"], "tat": ["K29I", "Q60P"], "vif": ["A35T", "D37N", "H73N", "K122Q"], "vpu": ["F27Y"]}, "labels": {"aa": "INT: D288N; RT-p51: F214L; RT-p66: F214L; gp120: N1K, T104S, Y145S, S181T, E204K, V396I; nef: E18D, A53P, E158K; p24: S200T; pro: G16E; rev: I78L; tat: K29I, Q60P; vif: A35T, D37N, H73N, K122Q; vpu: F27Y"}}, "children": [{"name": "MN703130", "node_attrs": {"div": 0.14437, "accession": "MN703130", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GW"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DE00214GW039"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C150T", "T163G", "G166-", "T303A", "A311T", "G317A", "A360C", "C379A", "C467T", "C513A", "A585G", "C586T", "A599C", "A611G", "A613G", "A615G", "T636C", "A654G", "A659G", "C668T", "G686A", "G690A", "T763C", "C765T", "G803A", "G821A", "C827T", "G837A", "G956A", "A978G", "A989C", "T1004C", "C1040T", "A1074G", "C1103T", "A1115T", "G1134A", "A1242G", "G1271T", "G1313A", "A1327G", "G1339A", "C1342G", "C1350T", "G1430A", "C1446-", 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"pro": ["E35D", "L63S"], "rev": ["P30T", "I59V", "S103P", "V104G"], "tat": ["S23N", "R62C", "T76N", "S87P"], "vif": ["H27Y", "Y30H", "F39L", "E45D", "K151R", "Q178R", "S186N", "S188P"], "vpr": ["F15S", "H28Q", "R36M"], "vpu": ["D44N", "I46L", "T63I", "E66G", "-69Y", "-70N", "-71I", "-72L"]}, "labels": {"aa": "INT: R14K, I31V, V88I, Q95P, T218I, A265V, R284G; RT-p51: P4T, E36D, T39I, V135I, A158S, T173M, V189I, Q245K, V276I, V314I, P321S, V326I, A376V, T386A, M403R; RT-p66: P4T, E36D, T39I, V135I, A158S, T173M, V189I, Q245K, V276I, V314I, P321S, V326I, A376V, T386A, M403R, E449D, S468P, T470A, H483Y, Q507H, A508S, I521V; gp120: -3K, E4-, -5K, E21K, T35P, E59G, N105D, -106Y, -107R, N111-, N113-, -115S, -116S, -117G, E125-, N128D, L137I, N159S, S160T, S161-, S162-, K203M, K212T, A253V, E262Q, P263H, K265H, T288A, T292A, D294E, K307R, D309E, N312D, A318V, R322Q, H324Y, N327-, S336A, S337P, S360A, K361E, -368E, -370G, -379N, -381S, -382S, N383S, D384E, N420K, N433-; gp41: I24M, M54L, K106R, N109E, D110S, L118Q, D129Y, I130L, N133T, A151S, M176I, V187A, T192A, H211Q, I222T, D232G, A267V, T270I, W286G, D305N, I307T, A310T, R317G, I321L, G322V, Q323L, R330C, R342G; nef: T23N, T28I, A33V, S46R, A49P, P53S, L76V, K94Q, K104R, K105R, K158N, V182I, K192T, V194K, L198T; p17: S9R, A15E, L60I, T84V, I92M, D93G, I94V, I107V, A119T; p2: Q8-, Q9N, S10Q, N11A, -12N; p24: V11T, H12Y, V36I, I115V, E128D, V135I, T171A, E180D, K199R, R203K, A204G, P207S; p6: S14M, F15G, G16M, M17-, T22A, -26P; p7: R34K; pro: E35D, L63S; rev: P30T, I59V, S103P, V104G; tat: S23N, R62C, T76N, S87P; vif: H27Y, Y30H, F39L, E45D, K151R, Q178R, S186N, S188P; vpr: F15S, H28Q, R36M; vpu: D44N, I46L, T63I, E66G, -69Y, -70N, -71I, -72L"}}}, {"name": "CRF02_AG_NODE_0000039", "node_attrs": {"div": 0.11302999999999999, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T161-", "T201C", "A645G", "G866T", "T979C", "A1127G", "G1757A", "A2764G", "G3220A", "A3334C", "T3355G", "G3379A", 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rev: I18T, C82S"}}, "children": [{"name": "CRF02_AG_NODE_0000040", "node_attrs": {"div": 0.11671, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["-167G", "A170G", "A171T", "C173-", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "C193T", "C200T", "G205A", "T206G", "C213T", "G214T", "A215-", "A216-", "A217-", "A509G", "T808C", "T852A", "C1299A", "G1657A", "T2383C", "G3218A", "C3222T", "C3225T", "A3280G", "T3497A", "G3686A", "G5128A", "A5717G", "A5726G", "-5825A", "C5884A", "G5915A", "T6148C", "-6206A", "-6214A", "-6216A", "-6217G", "-6218G", "-6219A", "A6326G", "A6781C", "T6958G", "T6961C", "A7238G", "G7289C", "G7477A", "A7590C", "A7700G", "A7846G", "G8279T", "C8293T", "C8331T", "A8844G"], "RT-p51": ["V375I", "A376V"], "RT-p66": ["V375I", "A376V", "S468T", "V531I"], "gp120": ["E21K", "K462E", "E479Q"], "gp41": ["N96T", "G326C"], "nef": ["Q15K", "I168V"], "p1": ["S9N"], "p24": ["V26A", "S41T", "L190M"], "vif": ["R181K"], "vpu": ["K37R", "D40S"]}, "labels": {"aa": "RT-p51: V375I, A376V; RT-p66: V375I, A376V, S468T, V531I; gp120: E21K, K462E, E479Q; gp41: N96T, G326C; nef: Q15K, I168V; p1: S9N; p24: V26A, S41T, L190M; vif: R181K; vpu: K37R, D40S"}}, "children": [{"name": "FJ694792", "node_attrs": {"div": 0.15256999999999998, "accession": "FJ694792", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GW"}, "date": {"value": 2005.0}, "Strain_name": {"value": "CC_0048"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C227T", "T303-", "A388G", "C426T", "C435T", "G452A", "C456T", "A492T", "A541G", "T560C", "T571A", "C596T", "A619G", "A654G", "A678G", "A699G", "G803A", "T866G", "G956T", "C974T", "C1040T", "G1127A", "A1205G", "A1263T", "G1265A", "G1313A", "T1316C", "C1342G", "A1367G", "G1388A", "G1404A", "T1421C", "T1444C", "-1448G", "A1673G", "G1718A", "T1722A", "T1724G", "G1725-", 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"C5538G", "C5560A", "G5602T", "C5614T", "A5621C", "G5673A", "C5713G", "G5729A", "G5730C", "T5739C", "T5791G", "C5792A", "C5793A", "A5794G", "C5795A", "T5796A", "C5797-", "T5798-", "T5799-", "A5800T", "A5804C", "G5805C", "A5806C", "G5808T", "G5809C", "G5810T", "G5811T", "G5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824G", "-5826T", "-5827A", "T5851C", "A5855G", "T5860A", "-5861A", "-5862A", "-5863C", "G5864A", "A5865G", "-5869G", "G5907A", "A5957G", "A6020T", "A6024C", "A6044G", "C6101T", "C6115T", "T6155C", "A6158G", "T6160G", "T6163-", "A6168-", "A6176-", "A6177-", "C6178-", "A6182T", "G6183C", "T6187C", "A6188G", "-6189T", "C6196A", "-6198C", "C6199T", "-6201A", "-6203G", "-6204T", "-6205C", "-6207G", "-6210C", "-6211C", "-6212A", "-6213T", "-6215C", "-6220A", "A6223T", "G6224A", "G6226C", "C6247T", "G6267T", "C6278A", "T6295G", "A6302G", "G6303T", "T6322G", "A6323G", "T6328A", "A6333G", "T6334C", "-6338A", "A6339G", "A6371G", "A6374G", "T6418C", "A6461G", "A6500T", "A6532G", "G6572A", "T6582A", "G6583A", "C6618T", "G6631A", "A6649C", "A6654C", "T6655C", "C6660G", "T6676C", "C6777G", "G6779A", "A6780C", "A6788G", "C6790G", "G6802T", "G6823A", "C6824T", "C6838T", "A6848G", "A6854G", "T6895C", "T6904C", "-6956A", "-6957A", "A6959C", "A6962G", "T6967C", "T6968A", "G6969A", "-6972C", "-6973C", "A6975G", "-6977G", "-6978T", "-6979A", "-6980G", "-6981G", "-6982G", "-6983C", "-6984C", "-6985A", "-6986T", "-6988T", "A6989G", "C6993A", "A7001-", "A7002-", "T7003-", "G7004-", "A7005-", "A7007-", "C7008-", "T7009-", "A7021G", "A7100C", "G7101A", "T7150A", "A7152T", "C7170T", "G7225A", "C7268T", "A7297G", "G7315A", "G7322C", "C7463A", "A7589G", "A7620G", "A7628G", "T7642C", "T7666C", "G7688C", "C7690A", "A7691T", "A7701G", "A7714C", "A7722T", "T7774C", "A7782G", "T7801A", "A7807G", "T7823G", "G7831A", "G7868A", "A7931T", "C7932A", "C7939T", "A7948T", "A7953G", "C8005G", "A8029C", "A8032G", "C8071T", "G8093C", "G8098A", "G8105A", "T8113A", "A8170G", "C8172T", "T8203C", "T8206C", "G8216A", "C8232T", "A8263G", "A8275C", "C8291T", "T8292G", "G8304C", "T8323C", "A8330C", "G8388A", "G8404A", "A8420G", "A8424G", "C8425A", "A8435C", "T8444A", "A8465G", "A8469C", "A8501C", "C8510A", "C8531A", "G8537C", "G8558A", "G8561A", "A8573G", "G8589T", "A8591G", "A8653G", "A8699C", "C8740T", "G8753A", "T8759C", "G8793A", "G8808C", "C8809T", "C8810T", "G8818A", "T8847A", "C8873T", "A8903C", "C8914T", "A8915C"], "INT": ["I72V", "I201V"], "RT-p51": ["P4S", "E36D", "T39K", "D123E", "V135I", "I142V", "K281R", "D291E", "R358K", "E399D"], "RT-p66": ["P4S", "E36D", "T39K", "D123E", "V135I", "I142V", "K281R", "D291E", "R358K", "E399D", "L452I", "L517I", "K524E", "E527R", "K558R"], "gp120": ["K1E", "-3N", "E4R", "-5K", "R18K", "T35A", "I56L", "H57P", "N64D", "N102E", "S104T", "N105I", "-106Q", "-107E", "-109S", "-110T", "N111L", "-112H", "N113-", "R138I", "Q142K", "R150V", "I156M", "N158E", "I173V", "T174A", "K203E", "T216S", "E240K", "V243E", "T255I", "N261K", "K265N", "N267T", "T269S", "T308R", "D309T", "N312E", "K316N", "H324Y", "N327-", "I332V", "-368K", "N369H", "T371-", "T380-", "N383-", "R416Q", "N432K", "N433I", "T439I", "H472Y"], "gp41": ["V7L", "T96A", "K106R", "N109D", "D129Q", "I130L", "N133G", "E137D", "N140I", "N160S", "N166K", "F174V", "M176I", "A189T", "T210Y", "E215D", "D217G", "L242F", "A264L", "A268T", "S290L", "D305N", "A310V", "R324S", "L330C", "R334T", "A343L"], "nef": ["V16I", "R21K", "T28E", "I43L", "D63E", "E65D", "A83S", "K104R", "T133I", "A151T", "A156L", "G159E", "C169S", "R187S", "S191F"], "p17": ["K18R", "T53S", "K69R", "F79Y", "K95R", "I107V", "T115A", "T122A"], "p2": ["V7A"], "p24": ["V11I", "E75D", "T178S", "A204G", "G225S"], "p6": ["F15M", "G16-", "M17-", "I21M", "S24P", "-26T", "K27-", "R31G", "N47S"], "pro": ["K41R"], "rev": ["A8S", "Y28L", "P31S", "T34S", "R53G", "S61R", "T62A", "D84N", "S86N", "C89S", "I108V"], "tat": ["L3P", "N40K", "R54Q", "R55Q", "G57R", "T58G", "P59T", "S61P", "R62S", "L74F", "P75T", "T77I", "N80I", "T82A"], "vif": ["T20A", "I31R", "N37D", "S46T", "R67K", "R132S"], "vpr": ["E58G", "I63L", "G94S"], "vpu": ["P3S", "E5A", "Q36E", "R41N", "L61E", "S62L", "T63A", "M65L", "E66M", "M67-", "G68-", "-70E", "-71M", "-72G", "-73D", "-74N", "-75N", "-76I", "-77L", "D80N", "D81N"]}, "labels": {"aa": "INT: I72V, I201V; RT-p51: P4S, E36D, T39K, D123E, V135I, I142V, K281R, D291E, R358K, E399D; RT-p66: P4S, E36D, T39K, D123E, V135I, I142V, K281R, D291E, R358K, E399D, L452I, L517I, K524E, E527R, K558R; gp120: K1E, -3N, E4R, -5K, R18K, T35A, I56L, H57P, N64D, N102E, S104T, N105I, -106Q, -107E, -109S, -110T, N111L, -112H, N113-, R138I, Q142K, R150V, I156M, N158E, I173V, T174A, K203E, T216S, E240K, V243E, T255I, N261K, K265N, N267T, T269S, T308R, D309T, N312E, K316N, H324Y, N327-, I332V, -368K, N369H, T371-, T380-, N383-, R416Q, N432K, N433I, T439I, H472Y; gp41: V7L, T96A, K106R, N109D, D129Q, I130L, N133G, E137D, N140I, N160S, N166K, F174V, M176I, A189T, T210Y, E215D, D217G, L242F, A264L, A268T, S290L, D305N, A310V, R324S, L330C, R334T, A343L; nef: V16I, R21K, T28E, I43L, D63E, E65D, A83S, K104R, T133I, A151T, A156L, G159E, C169S, R187S, S191F; p17: K18R, T53S, K69R, F79Y, K95R, I107V, T115A, T122A; p2: V7A; p24: V11I, E75D, T178S, A204G, G225S; p6: F15M, G16-, M17-, I21M, S24P, -26T, K27-, R31G, N47S; pro: K41R; rev: A8S, Y28L, P31S, T34S, R53G, S61R, T62A, D84N, S86N, C89S, I108V; tat: L3P, N40K, R54Q, R55Q, G57R, T58G, P59T, S61P, R62S, L74F, P75T, T77I, N80I, T82A; vif: T20A, I31R, N37D, S46T, R67K, R132S; vpr: E58G, I63L, G94S; vpu: P3S, E5A, Q36E, R41N, L61E, S62L, T63A, M65L, E66M, M67-, G68-, -70E, -71M, -72G, -73D, -74N, -75N, -76I, -77L, D80N, D81N"}}}, {"name": "FJ694791", "node_attrs": {"div": 0.14192, "accession": "FJ694791", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GW"}, "date": {"value": 2004.0}, "Strain_name": {"value": "CC_0030"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T135-", "A138G", "T141C", "C143-", "C144-", "T145-", "C146-", "A147-", "G148-", "A149-", "C150-", "C151-", "A152-", "C153-", "T154-", "C155-", "T156-", "A157-", "G158-", "A159-", "C160-", "G162-", "T163-", "G164-", "T165-", "G256-", "A276-", "A278G", "G279A", "-280G", "A353G", "G424A", "C435A", "G480A", "T525A", "T531C", "A534G", "A562G", "A579G", "C614T", "A615G", "T655G", "A656G", "A673C", "C691A", "C707T", "G740A", "A762G", "C1013T", "A1025G", "A1067G", "C1091T", "T1136A", "C1169T", "G1173A", "T1174C", "A1329T", "T1385C", "A1400G", "C1446-", "A1447-", "G1451T", "T1452C", "C1453A", "C1454G", "-1455G", "-1456C", "-1457C", "A1461G", "A1709T", "-1746T", "T1754A", "C1755-", "C1756-", "A1757-", "G1771A", "C1833A", "A1834T", "A1845G", "A1903C", "A1951G", "A1988G", "C2057A", "A2154C", "T2209C", "A2221G", "A2332G", "C2365T", "G2389A", "G2509A", "C2596T", "T2644C", "A2662G", "T2668A", "G2707A", "G2710A", "A2713G", "A2722C", "C2828A", "A2829C", "G2830A", "C2944T", "A2974G", "T3022A", "A3037G", "C3140T", "G3169A", "A3192G", "A3208G", "A3224C", "A3238G", "C3253T", "A3258G", "G3293A", "T3303C", "G3355A", "C3376T", "C3542T", "C3589T", "A3703G", "T3754C", "A3814G", "C3892T", "T4543G", "T4606G", "A4650C", "C4665T", "T4701C", "A4878G", "A4892G", "G5036A", "A5065G", "T5148C", "C5214A", "G5267C", "T5293A", "C5406A", "G5444A", "G5448A", "G5484A", "C5491T", "C5530T", "C5559T", "G5620A", "A5640G", "G5715A", "T5796C", "A5806G", "-5826C", "-5827T", "A5867G", "-5869T", "G5893A", "T5911C", "C6023A", "G6029C", "A6030C", "A6065G", "C6109T", "T6163C", "-6164A", "-6165G", "-6166C", "-6167A", "-6169T", "-6170C", "-6171C", "-6172T", "-6173G", "-6174T", "-6175A", "C6178T", "-6179G", "-6180T", "T6181C", "T6184C", "-6189C", "C6193T", "C6196T", "-6198G", "-6201T", "-6203T", "-6204C", "-6205T", "-6207A", "-6210T", "-6211G", "-6212C", "-6213A", "-6215G", "-6220C", "A6222T", "A6223G", "G6224C", "G6226A", "A6251G", "A6261T", "A6283T", "T6287C", "C6288A", "A6292G", "A6320G", "A6333C", "-6338T", "G6425A", "T6436A", "A6442G", "A6443C", "A6450T", "T6457G", "C6523T", "A6636C", "G6638A", "A6647G", "A6648G", "G6689A", "C6721T", "A6723T", "A6728G", "C6758T", "A6773G", "C6777A", "A6778T", "A6788C", "A6789G", "A6800G", "G6819A", "-6830C", "-6831C", "-6832G", "-6833A", "-6834A", "-6835T", "C6838G", "A6839-", "C6840-", "C6841-", "C6855A", "A6858G", "G6871A", "A6889G", "G6935A", "C6936A", "-6956G", "-6957G", "-6972G", "-6973G", "-6977A", "-6978G", "-6979T", "-6980A", "-6981C", "-6982T", "-6983G", "-6984G", "-6985G", "-6986G", "-6988G", "C6993G", "-6995A", "-6996A", "-6997C", "-6998A", "-6999G", "-7000T", "T7003C", "G7004T", "A7005C", "-7006A", "G7056A", "T7095C", "A7138G", "A7148G", "T7156C", "A7158C", "T7159G", "C7161A", "A7237G", "A7522G", "A7594G", "C7742A", "C7792A", "A7796T", "T7912A", "C7921A", "C7926T", "C7939G", "A7992G", "G8006A", "G8008A", "C8009A", "G8050A", "T8094C", "C8149T", "G8194A", "G8234A", "T8235C", "A8284G", "C8336A", "C8342A", "G8394A", "A8402G", "C8412A", "T8414A", "C8415G", "C8440T", "A8455C", "G8490C", "G8570A", "A8584T", "A8717G", "A8784C", "T8789G", "C8794A", "A8795C", "G8822A", "C8867T", "G8885A", "A8917G", "T8927C", "A8991G", "C8993T", "A8994G", "G9005A"], "INT": ["D256E"], "RT-p51": ["K20T", "Q245T", "K366R", "M377L", "K388R", "A400T", "M403T"], "RT-p66": ["K20T", "Q245T", "K366R", "M377L", "K388R", "A400T", "M403T", "H483Y"], "gp120": ["-5D", "H57N", "E59P", "N71D", "-106P", "-107V", "-109V", "-110S", "-112S", "-114I", "-115S", "-116N", "-117G", "-118L", "-119Q", "-120E", "-121D", "-122M", "-123R", "-124R", "M133V", "E136V", "K143N", "S145H", "I156V", "D157-", "N159D", "A191T", "I197L", "K199M", "N201K", "N261T", "E262K", "K265G", "V279I", "Y290F", "T292A", "H302Y", "K307E", "T308N", "N312R", "K316E", "R322K", "-326P", "N328-", "T329K", "N335S", "A361K", "-368G", "-370N", "-374N", "-375S", "-376T", "-378E", "T380S", "-381N", "-382S", "D384S", "R401K", "V414A", "N432D", "N435T"], "gp41": ["M54L", "N133D", "Q147K", "D163E", "T165S", "F206L", "T208I", "H212Q", "D230G", "V235I", "V311T", "A343I", "L345I"], "nef": ["D18N", "I20M", "P25A", "A33V", "D38A", "Y81F", "M148L", "D149E", "A151D", "K192R"], "p17": ["R30K", "L34I", "G49S", "L64I", "S66P", "T67A", "K76R", "I82V", "I94V", "I107R", "Q113P", "A119E"], "p2": ["Q8H", "S10-", "N11A", "-12N", "I13V"], "p24": ["E45D", "V148T", "T200S"], "p6": ["R31K", "Q52M"], "pro": ["T12N", "E16G", "E35D", "I64V"], "rev": ["A15V", "P31A", "R53H", "A54K", "A68T", "S82C", "Q101*", "E116K"], "tat": ["S23N", "R52W", "P73S", "T77S"], "vif": ["V7G", "N22H", "H27Y", "F39L", "I98V", "K160R", "S188P"], "vpr": ["F15S", "P37Q", "E55Q"], "vpu": ["M67V", "-69D", "-70Y", "-71N", "-72I", "-73L"]}, "labels": {"aa": "INT: D256E; RT-p51: K20T, Q245T, K366R, M377L, K388R, A400T, M403T; RT-p66: K20T, Q245T, K366R, M377L, K388R, A400T, M403T, H483Y; gp120: -5D, H57N, E59P, N71D, -106P, -107V, -109V, -110S, -112S, -114I, -115S, -116N, -117G, -118L, -119Q, -120E, -121D, -122M, -123R, -124R, M133V, E136V, K143N, S145H, I156V, D157-, N159D, A191T, I197L, K199M, N201K, N261T, E262K, K265G, V279I, Y290F, T292A, H302Y, K307E, T308N, N312R, K316E, R322K, -326P, N328-, T329K, N335S, A361K, -368G, -370N, -374N, -375S, -376T, -378E, T380S, -381N, -382S, D384S, R401K, V414A, N432D, N435T; gp41: M54L, N133D, Q147K, D163E, T165S, F206L, T208I, H212Q, D230G, V235I, V311T, A343I, L345I; nef: D18N, I20M, P25A, A33V, D38A, Y81F, M148L, D149E, A151D, K192R; p17: R30K, L34I, G49S, L64I, S66P, T67A, K76R, I82V, I94V, I107R, Q113P, A119E; p2: Q8H, S10-, N11A, -12N, I13V; p24: E45D, V148T, T200S; p6: R31K, Q52M; pro: T12N, E16G, E35D, I64V; rev: A15V, P31A, R53H, A54K, A68T, S82C, Q101*, E116K; tat: S23N, R52W, P73S, T77S; vif: V7G, N22H, H27Y, F39L, I98V, K160R, S188P; vpr: F15S, P37Q, E55Q; vpu: M67V, -69D, -70Y, -71N, -72I, -73L"}}}]}, {"name": "CRF02_AG_NODE_0000041", "node_attrs": {"div": 0.11445999999999999, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G378T", "-1448G", "A2210G", "C2613T", "C4697A", "A5463G", "-5814T", "-5815G", "-5816A", "-6169T", "-6170A", "-6173A", "-6179A", "A6462T", "G6463A", "T6964C", "C7324T", "A7470G", "T8092A", "G8255A"], "RT-p51": ["T39A"], "RT-p66": ["T39A"], "gp120": ["-124G", "D157K", "S161T", "K203I"], "gp41": ["K56R", "F263L", "R317S", "V318I"], "p17": ["A15S"], "p2": ["N11S"], "tat": ["I29M"], "vif": ["N37K"]}, "labels": {"aa": "RT-p51: T39A; RT-p66: T39A; gp120: -124G, D157K, S161T, K203I; gp41: K56R, F263L, R317S, V318I; p17: A15S; p2: N11S; tat: I29M; vif: N37K"}}, "children": [{"name": "MF373200", "node_attrs": {"div": 0.16931, "accession": "MF373200", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "SE"}, "date": {"value": 2014.0}, "Strain_name": {"value": "098GN"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C352A", "A353C", "G354A", "T357C", "T358A", "A360G", "G361A", "T362G", "G363T", "A369G", "T422C", "G455A", "C456T", "T485C", "T486C", "A497T", "A500G", "A515G", "G524A", "T536C", "A551T", "G552T", "A562G", "A563G", "A576G", "A584T", "G608A", "A615C", "A620G", "A628T", "A632G", "A644G", "G648A", "A661T", "G665T", "T695C", "A699C", "C700T", "A701T", "G703A", "A708G", "G721T", "A725T", "A737T", "A743C", "A752C", "G753C", "A762G", "G770A", "T771G", "C772T", "A774C", "G776A", "G784A", "G791T", "C796T", "A797C", "G801A", "A804C", "G806A", "A809T", "A810T", "A812G", "G813-", "A814-", "A815-", "G816A", "A818G", "G821C", "C830T", "T861G", "A891G", "T936C", "G977A", "C979T", "G1022A", "T1055G", "A1101G", "C1103T", "G1134A", "A1157C", "T1262C", "C1304T", "C1322T", "A1328G", "A1337G", "G1339A", "G1354C", "G1355A", "C1406T", "A1459G", "G1493A", "A1580G", "G1586A", "T1613C", "T1646C", "C1693A", "G1720C", "T1723G", "T1724G", "G1731A", "G1734-", "A1735-", "A1736-", "A1740G", "T1741A", "C1744T", "C1745A", "-1746A", "T1749C", "C1750T", "G1780A", "A1781G", "G1846A", "A1951G", "T1956A", "C1960T", "A2007G", "T2071C", "A2161G", "A2203G", "G2215C", "A2230G", "C2353T", "C2386A", "G2389A", "A2407G", "A2470G", "T2488C", "G2498A", "A2566G", "C2589T", "A2614G", "C2638T", "G2660A", "G2683A", "A2699G", "T2708C", "C2740A", "G2764A", "C2831T", "G2837A", "A2839C", "A2842G", "A2881G", "A2887C", "T2905A", "G2909C", "G2926A", "C2941T", "C2952T", "G2986A", "C3023T", "G3071A", "A3137T", "A3142G", "A3165G", "C3180T", "G3218A", "C3225A", "A3226G", "G3227A", "A3279G", "C3334T", "G3340A", "G3385A", "A3421G", "C3449A", "G3477A", "G3491A", "G3494A", "G3523A", "A3637G", "G3643A", "A3666G", "T3754C", "C3773A", "C3799T", "A3854T", "C3889A", "G3917A", "C3940T", "T3978A", "A3979G", "G3980A", "A3982G", "A3985G", "A3989G", "G4063A", "G4109A", "T4110C", "C4132T", "A4174C", "A4189G", "C4216T", "T4291C", "G4306A", "A4423G", "C4428T", "T4450C", "C4569T", "A4570G", "G4622A", "G4685A", "A4689G", "G4694T", "G4723C", "T4724A", "G4766A", "C4826A", "A4850G", "A4854G", "G4856A", "C4871A", "C4890T", "C4937A", "A4993C", "T5006G", "C5034T", "A5051T", "A5062G", "A5086G", "G5087A", "A5088T", "A5096T", "C5102T", "C5168T", "C5186A", "T5203C", "A5236T", "C5237A", "G5266C", "G5270T", "A5284C", "A5301C", "T5319C", "A5322G", "C5334T", "A5335C", "T5342C", "T5356A", "G5359C", "G5361A", "A5363C", "A5364C", "G5365T", "A5366G", "A5377C", "G5385A", "G5396A", "G5418A", "A5525G", "C5536A", "A5575G", "A5603T", "T5604A", "G5607A", "C5611A", "A5612C", "A5619G", "G5620T", "A5621G", "A5622C", "C5627T", "C5664A", "T5670A", "T5688C", "G5699A", "G5700A", "A5702G", "A5716G", "A5718T", "A5721G", "G5730A", "T5736G", "T5781G", "-5813A", "-5817T", "-5818A", "-5819A", "A5828-", "T5829-", "A5830-", "A5831-", "A5842T", "-5869T", "G5882A", "G5893A", "G5917A", "C5924T", "T5964C", "A6009G", "T6034C", "C6052T", "T6064C", "C6115T", "A6130G", "C6145T", "T6146G", "T6151C", "A6158G", "T6160G", "-6164T", "-6165G", "-6166G", "-6167G", "-6171A", "-6172A", "-6174A", "-6175C", "-6180C", "A6182T", "T6184G", "A6185G", "-6189A", "C6190A", "G6195A", "-6198C", "A6200G", "-6201A", "-6203A", "-6204T", "-6205G", "C6208-", "A6209-", "A6221G", "A6230G", "C6241T", "T6242A", "T6244C", "G6269A", "A6273G", "T6287A", "C6288A", "T6289A", "T6328C", "A6332G", "G6336C", "-6338T", "T6358G", "C6369T", "G6451A", "A6456G", "T6457A", "A6464G", "G6466A", "C6469T", "T6472G", "C6499T", "C6523T", "T6534C", "G6572A", "A6574C", "G6575A", "A6576G", "T6579C", "G6581A", "G6588C", "A6637T", "T6643G", "A6647C", "A6654C", "A6669G", "A6682G", "A6684C", "A6685C", "C6729T", "T6745C", "A6770G", "G6771A", "A6773G", "A6774C", "G6779C", "C6790A", "C6807T", "A6809G", "C6810G", "A6814G", "G6823T", "-6833A", "-6834A", "-6835T", "A6836G", "A6837T", "A6839T", "C6841A", "C6843A", "A6844C", "T6849C", "A6854G", "A6858G", "C6938T", "-6956G", "-6957T", "-6972A", "-6973T", "-6977G", "-6978A", "-6979G", "A6987-", "A6990T", "C6993A", "T6994C", "-6995G", "-6996A", "-6997G", "-6998A", "-6999C", "-7000C", "T7003C", "G7004A", "-7006G", "T7009C", "A7027G", "T7095C", "G7101A", "G7102A", 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"V112T", "T218I", "A265V", "G283S"], "RT-p51": ["E40D", "V135I", "T165I", "T173M", "V189I", "I202V", "E248N", "A272P", "A286V", "V326I", "N348Y", "K357R", "T362I", "V375I", "M377K", "E378K", "K395R"], "RT-p66": ["E40D", "V135I", "T165I", "T173M", "V189I", "I202V", "E248N", "A272P", "A286V", "V326I", "N348Y", "K357R", "T362I", "V375I", "M377K", "E378K", "K395R", "L452I", "R461K", "V466I", "V467I", "K524R", "L560I"], "gp120": ["-5N", "V10I", "V37A", "N52S", "C98G", "N102E", "S104W", "N105D", "-106K", "-107K", "-109N", "-110T", "N111D", "-112M", "N113E", "I126V", "S130T", "D139N", "K140R", "S145K", "S160D", "S162Y", "C168W", "A172V", "N201R", "K204E", "N206K", "V227A", "E240N", "E241R", "I242T", "V243M", "R245T", "K265Q", "N267T", "N272S", "K277T", "T292I", "D294E", "S306D", "K307A", "D309Q", "N312K", "A318V", "T319G", "K323N", "N328V", "T329S", "T330N", "I332T", "N335S", "-368V", "-370N", "-372W", "-373N", "-374N", "-375E", "-376I", "-377N", "T380-", "-381E", "-382T", "D384K", "V414A", "R416K", "N433-", "N437T", "T471S", "H472R"], "gp41": ["L4M", "G5A", "R46K", "R74S", "G83R", "I84N", "W85L", "C87L", "S88L", "I124V", "K154Q", "S157N", "D163G", "N166K", "I177V", "E215G", "V235M", "V238S", "A243E", "A245T", "Y257C", "E280G", "A281V", "L288F", "D305N", "A343S"], "nef": ["Q15E", "D18N", "R21K", "T28V", "S46N", "A49V", "R71K", "Y135F", "D177N", "V194I", "L198M"], "p17": ["S6Y", "V7I", "L8Q", "S9E", "G10W", "K12E", "E73*", "K76R", "T81A", "I94L", "K98M", "E105K", "N109I", "K110N", "T122L", "G123E", "S125G", "-126I", "-127H", "S129-", "Q130-"], "p24": ["Q4H", "Q7H", "G8R", "S14V", "M15L", "R18K", "L20F", "A22V", "V24M", "K25Q", "I27L", "E28K", "E29N", "K30-", "S44A", "E45D", "M54V", "T83I", "I124V", "V135I", "R203K", "G208A"], "p6": ["P5Q", "S14T", "F15W", "G18R", "S23L", "S24P", "G34E"], "pro": ["F53Y", "K70R"], "rev": ["R4G", "D7E", "A37T", "R53H", "A54E", "S56K", "E57Q", "S61R", "T62A", "C63Y", "S67F", "L78I", "E87K", "S106F", "S107L", "E116K"], "tat": ["M1L", "S7N", "K50R", "R54S", "N67D", "N80D", "G83D"], "vif": ["T35A", "K36N", "S46T", "H80Q", "K90E", "S95R", "D117E", "Q136P", "N140K", "K159R", "K167R", "K168*"], "vpr": ["H28N", "Q44H", "H45N", "W54C", "G56W", "Q66P", "F72S", "R73G", "Q77S", "I84N", "R85P", "G86S", "R87L", "N91T", "G94S"], "vpu": ["Q2T", "E5C", "A7V", "R31K", "K32R", "K37D", "D40N", "D58E", "D78-", "N79-"]}, "labels": {"aa": "INT: N27Y, E48K, L68*, E69K, I72V, V112T, T218I, A265V, G283S; RT-p51: E40D, V135I, T165I, T173M, V189I, I202V, E248N, A272P, A286V, V326I, N348Y, K357R, T362I, V375I, M377K, E378K, K395R; RT-p66: E40D, V135I, T165I, T173M, V189I, I202V, E248N, A272P, A286V, V326I, N348Y, K357R, T362I, V375I, M377K, E378K, K395R, L452I, R461K, V466I, V467I, K524R, L560I; gp120: -5N, V10I, V37A, N52S, C98G, N102E, S104W, N105D, -106K, -107K, -109N, -110T, N111D, -112M, N113E, I126V, S130T, D139N, K140R, S145K, S160D, S162Y, C168W, A172V, N201R, K204E, N206K, V227A, E240N, E241R, I242T, V243M, R245T, K265Q, N267T, N272S, K277T, T292I, D294E, S306D, K307A, D309Q, N312K, A318V, T319G, K323N, N328V, T329S, T330N, I332T, N335S, -368V, -370N, -372W, -373N, -374N, -375E, -376I, -377N, T380-, -381E, -382T, D384K, V414A, R416K, N433-, N437T, T471S, H472R; gp41: L4M, G5A, R46K, R74S, G83R, I84N, W85L, C87L, S88L, I124V, K154Q, S157N, D163G, N166K, I177V, E215G, V235M, V238S, A243E, A245T, Y257C, E280G, A281V, L288F, D305N, A343S; nef: Q15E, D18N, R21K, T28V, S46N, A49V, R71K, Y135F, D177N, V194I, L198M; p17: S6Y, V7I, L8Q, S9E, G10W, K12E, E73*, K76R, T81A, I94L, K98M, E105K, N109I, K110N, T122L, G123E, S125G, -126I, -127H, S129-, Q130-; p24: Q4H, Q7H, G8R, S14V, M15L, R18K, L20F, A22V, V24M, K25Q, I27L, E28K, E29N, K30-, S44A, E45D, M54V, T83I, I124V, V135I, R203K, G208A; p6: P5Q, S14T, F15W, G18R, S23L, S24P, G34E; pro: F53Y, K70R; rev: R4G, D7E, A37T, R53H, A54E, S56K, E57Q, S61R, T62A, C63Y, S67F, L78I, E87K, S106F, S107L, E116K; tat: M1L, S7N, K50R, R54S, N67D, N80D, G83D; vif: T35A, K36N, S46T, H80Q, K90E, S95R, D117E, Q136P, N140K, K159R, K167R, K168*; vpr: H28N, Q44H, H45N, W54C, G56W, Q66P, F72S, R73G, Q77S, I84N, R85P, G86S, R87L, N91T, G94S; vpu: Q2T, E5C, A7V, R31K, K32R, K37D, D40N, D58E, D78-, N79-"}}}, {"name": "CRF02_AG_NODE_0000042", "node_attrs": {"div": 0.11965999999999999, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C201G", "A353G", "A534G", "G645T", "C974T", "G1139A", "G1271T", "G1567A", "G2518A", "A3196G", "G3439A", "T3644A", "A3675G", "G4105A", "C4270T", "A4855G", "C4950A", "G5170A", "C5425A", "C5795A", "T5796A", "A5843T", "C5958A", "G6029A", "-6167A", "-6172C", "T6181C", "-6210T", "A6333C", "G6368A", "A6488C", "C6925T", "-6980G", "-6981A", "-6982G", "-6984C", "-6985A", "-6986A", "-6988T", "A6989G", "A7007C", "G7056A", "A7158G", "C7201T", "C7264T", "G7631A", "G7688A", "A7818G", "A7877G", "A8032T", "C8103-", "G8105-", "G8107-", "G8110-", "C8112-", "G8114-", "G8116-", "C8120-", "T8121-", "T8122-", "G8393A", "A8540G", "G8555A", "C8597T", "T8701A", "A8780G", "A8784G", "A8807G", "T8831C", "G8871C", "G8893A", "C9078T"], "RT-p51": ["T173I"], "RT-p66": ["T173I", "L517I", "E527G"], "gp120": ["T35K", "E59K", "A172T", "N261K", "T371-", "-378N", "R401K", "N435S"], "gp41": ["D129N", "K172R", "T192A", "A267L", "A268G", "R269H", "T270S", "V271S", "E272L", "L273K", "L274G", "G275L", "G278S"], "nef": ["F120Y", "M148V", "D177H", "R184K"], "p17": ["T67A", "V104L"], "p24": ["V11I", "E180D"], "p7": ["R34K"], "rev": ["T62S", "C85-", "S86-", "E87-", "D88-", "C89-", "G90-", "T91-", "G96Q", "V97S"], "vif": ["K90R"], "vpu": ["N79I"]}, "labels": {"aa": "RT-p51: T173I; RT-p66: T173I, L517I, E527G; gp120: T35K, E59K, A172T, N261K, T371-, -378N, R401K, N435S; gp41: D129N, K172R, T192A, A267L, A268G, R269H, T270S, V271S, E272L, L273K, L274G, G275L, G278S; nef: F120Y, M148V, D177H, R184K; p17: T67A, V104L; p24: V11I, E180D; p7: R34K; rev: T62S, C85-, S86-, E87-, D88-, C89-, G90-, T91-, G96Q, V97S; vif: K90R; vpu: N79I"}}, "children": [{"name": "MN703128", "node_attrs": {"div": 0.15891, "accession": "MN703128", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GW"}, "date": {"value": 2013.0}, "Strain_name": {"value": "DE00213GW041"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A133T", "-161G", "G162T", "A263G", "A425G", "T485G", "C513A", "G518A", "A541G", "A562G", "A569G", "A579G", "A599G", "C614A", "G629A", "A656G", "-711A", "-712G", "-713T", "A720-", "G721-", "C722-", "G738A", "G740A", "A759T", "T760G", "A774G", "G776A", "G837A", "T866A", "A873G", "G956A", "G977A", "G998A", "T1182C", "G1247A", "A1256G", "G1265A", "A1277G", "A1359T", "A1459G", "A1475G", "T1483A", "G1508A", "T1613C", "C1615A", "G1657A", "G1690A", "C1692A", "A1697G", "T1722C", "-1746T", "T1749C", "C1751T", "T1754A", "C1755A", "C1756A", "A1757G", "G1981A", "C1985T", "T1986C", "T2080C", "C2105T", "A2128T", "A2185G", "A2203C", "G2224A", "A2231C", "A2243G", "T2296C", "G2298A", "T2302A", "C2326T", 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"G8126A", "A8130T", "C8131G", "G8134T", "G8135-", "G8136-", "G8137-", "T8171A", "A8208G", "T8223C", "A8254C", "A8264T", "G8276A", "C8277T", "T8302C", "C8321T", "T8323A", "G8329A", "C8331G", "A8370T", "T8374G", "C8383A", "A8385C", "G8388A", "A8405G", "A8424C", "T8450C", "G8487A", "C8494A", "G8516A", "A8518C", "C8531T", "G8537T", "T8539G", "G8588A", "A8604G", "G8732A", "C8740T", "G8753A", "A8754T", "C8755G", "C8756T", "G8762A", "A8777G", "G8808C", "C8809T", "G8822A", "A8823G", "A8827G", "C8843T", "G8882A", "T8896G", "T8897G", "A8917G", "T8927C", "C8937T", "T9012C", "T9018G"], "INT": ["I72V", "I101L", "D256E", "K269R"], "RT-p51": ["P4S", "K11N", "E36D", "K46Q", "I50V", "S68N", "V118I", "D123N", "L228H", "Q245E", "V276I", "L283I", "T294V", "V326I", "K357R", "A376S", "A408V", "V435A"], "RT-p66": ["P4S", "K11N", "E36D", "K46Q", "I50V", "S68N", "V118I", "D123N", "L228H", "Q245E", "V276I", "L283I", "T294V", "V326I", "K357R", "A376S", "A408V", "V435A", "R461K", "V467I", "S468T", "A508G"], "gp120": ["K1N", "-3N", "E4Q", "-5M", "L6-", "D34V", "H57A", "N64D", "S104H", "-106N", "-107I", "N108T", "-109T", "-110T", "-112N", "N113T", "-114T", "-115P", "-116A", "-117P", "-118D", "-119M", "-120Q", "E125N", "M133I", "K141E", "Q142K", "V144E", "S151D", "I156M", "K157S", "N159T", "S160T", "T161-", "S162-", "K204E", "P210T", "K212Q", "E241K", "V243M", "S278G", "V279I", "R280H", "Q287R", "A291T", "T292D", "D294I", "I295V", "H302Y", "K307R", "N311E", "Q315K", "K316N", "A318S", "T319I", "R322G", "K323E", "-326K", "N328T", "T329-", "N335K", "S336P", "A361G", "T366S", "-368T", "N369-", "-377S", "-379G", "-381E", "-382P", "Q389P", "N397R", "P412K", "N432K", "N434S", "E438Q", "G443E", "H472Y"], "gp41": ["L4M", "S42N", "M54L", "R77G", "N96S", "Y108F", "D110S", "D113N", "S125H", "A151S", "P216L", "E220G", "I222T", "A264V", "S290T", "N302S", "I307T", "I321L", "A325I", "A343S"], "nef": ["I10L", "V11G", "P14H", "V16I", "T28P", "A49T", "T51N", "E59A", "S88G", "T133I", "T138C", "A156L", "N161D", "N162S", "F185W", "K192R", "H199Y"], "p1": ["S9N"], "p17": ["L60I", "M61I", "K69R", "K76R", "I82V", "D93E", "I107M"], "p24": ["V3I", "M10W", "M15V", "V36I", "T48A", "T210S"], "p6": ["R4K", "P5T", "F15L", "S24P", "-26K"], "p7": ["F6Y", "T50N"], "pro": ["L63S"], "rev": ["A15V", "P30S", "E32K", "R53S", "A54E", "I108N"], "tat": ["Q17K", "M29V", "R55G", "S61G", "T76I", "R78K", "P81S", "K85E", "S87P"], "vif": ["F39L", "L64I", "K159R"], "vpr": ["P37Q"], "vpu": ["E5G", "I28L", "K37R", "K38E", "E48D", "E60D", "L61T", "S62E", "T63E", "M65A", "E66N", "M67L", "G68I", "-70E", "-71L", "-72G", "-73D", "-74N", "-75N", "-76I", "-77L", "D80N", "D81N"]}, "labels": {"aa": "INT: I72V, I101L, D256E, K269R; RT-p51: P4S, K11N, E36D, K46Q, I50V, S68N, V118I, D123N, L228H, Q245E, V276I, L283I, T294V, V326I, K357R, A376S, A408V, V435A; RT-p66: P4S, K11N, E36D, K46Q, I50V, S68N, V118I, D123N, L228H, Q245E, V276I, L283I, T294V, V326I, K357R, A376S, A408V, V435A, R461K, V467I, S468T, A508G; gp120: K1N, -3N, E4Q, -5M, L6-, D34V, H57A, N64D, S104H, -106N, -107I, N108T, -109T, -110T, -112N, N113T, -114T, -115P, -116A, -117P, -118D, -119M, -120Q, E125N, M133I, K141E, Q142K, V144E, S151D, I156M, K157S, N159T, S160T, T161-, S162-, K204E, P210T, K212Q, E241K, V243M, S278G, V279I, R280H, Q287R, A291T, T292D, D294I, I295V, H302Y, K307R, N311E, Q315K, K316N, A318S, T319I, R322G, K323E, -326K, N328T, T329-, N335K, S336P, A361G, T366S, -368T, N369-, -377S, -379G, -381E, -382P, Q389P, N397R, P412K, N432K, N434S, E438Q, G443E, H472Y; gp41: L4M, S42N, M54L, R77G, N96S, Y108F, D110S, D113N, S125H, A151S, P216L, E220G, I222T, A264V, S290T, N302S, I307T, I321L, A325I, A343S; nef: I10L, V11G, P14H, V16I, T28P, A49T, T51N, E59A, S88G, T133I, T138C, A156L, N161D, N162S, F185W, K192R, H199Y; p1: S9N; p17: L60I, M61I, K69R, K76R, I82V, D93E, I107M; p24: V3I, M10W, M15V, V36I, T48A, T210S; p6: R4K, P5T, F15L, S24P, -26K; p7: F6Y, T50N; pro: L63S; rev: A15V, P30S, E32K, R53S, A54E, I108N; tat: Q17K, M29V, R55G, S61G, T76I, R78K, P81S, K85E, S87P; vif: F39L, L64I, K159R; vpr: P37Q; vpu: E5G, I28L, K37R, K38E, E48D, E60D, L61T, S62E, T63E, M65A, E66N, M67L, G68I, -70E, -71L, -72G, -73D, -74N, -75N, -76I, -77L, D80N, D81N"}}}, {"name": "MH078541", "node_attrs": {"div": 0.15602, "accession": "MH078541", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GW"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DE00214GW002"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C227A", "T303A", "T357C", "A371G", "T378A", "C379A", "A404G", "A417C", "G424A", "T560C", "C587T", "T591A", "G592A", "C596T", "A606G", "A619G", "C626T", "T767C", "T771C", "G791A", "C827T", "G870T", "C871G", "A903G", "A968C", "T983C", "A989G", "C1060A", "C1062A", "A1079G", "G1134A", "T1136C", "C1211T", "A1241G", "T1262C", "T1296C", "A1328G", "A1329T", "C1351A", "G1355A", "A1361C", "T1452C", "C1453A", "C1454G", "-1455A", "-1456C", "-1457C", "C1460T", "A1461G", "A1464C", "T1481C", "A1492G", "C1498T", "C1523T", "T1571C", "G1589A", "C1610T", "T1646C", "T1676C", "A1743-", "C1744-", "C1745-", "-1746A", "C1748T", "C1752T", "C1768A", "G1780A", "G1839A", "C1853T", "A1902C", "A2023C", "T2101C", "T2237G", "C2238A", "A2254G", "C2335T", "C2353A", "T2383C", "A2392G", "A2407G", "C2464A", "A2500G", "G2539C", "T2542C", "G2578A", "G2682A", "G2686A", "G2693A", "G2702C", "G2710A", "A2727G", "C2735T", "A2794G", "A2925G", "C2953T", "A2969G", "A2975C", "G2980A", "G3004A", "G3010A", "A3019G", "T3045C", "A3059G", "A3079G", "G3094A", "A3193G", "A3224T", "G3236A", "A3280G", "G3355A", "G3398A", "A3454G", "C3499T", "A3521C", "A3562T", "T3638G", "T3652C", "C3823T", "G4063A", "G4145A", "C4146A", "A4231G", "C4288T", "G4294A", "A4408G", "A4423G", "T4674C", "T4691C", "A4693G", "A4697G", "T4701A", "T4703G", "A4721G", "A4817G", "C4911T", "T4940G", "A4988C", "G4995A", "A5055G", "C5056G", "A5063T", "T5091C", "A5099G", "C5102T", "A5159G", "C5168A", "T5169C", "A5176G", "A5185G", "T5188A", "T5197C", "T5203C", 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"G6779A", "A6788G", "A6798G", "A6800G", "C6810A", "C6840A", "C6841G", "A6844C", "T6874C", "T6922C", "-6956A", "-6957A", "A6971G", "-6972G", "-6973G", "A6975C", "-6977A", "-6978A", "-6979T", "-6983G", "-6995G", "A7001-", "A7002G", "-7006A", "A7065G", "A7096C", "A7123C", "A7129G", "A7149G", "A7152C", "A7210G", "A7269G", "A7275G", "A7290G", "G7291A", "G7366A", "A7373C", "C7429T", "T7433C", "T7462G", "C7463A", "A7471G", "A7504G", "A7522G", "A7572G", "A7573G", "C7579T", "C7597T", "C7658G", "A7700G", "A7701G", "G7720A", "C7723T", "G7730A", "A7732C", "G7735A", "T7843C", "C7960A", "A7964G", "G8019A", "T8094C", "G8102-", "A8104-", "C8106-", "A8108-", "G8109-", "A8111-", "T8113-", "T8115-", "G8117-", "A8118-", "A8119-", "G8135A", "G8137T", "A8173C", "G8180A", "G8199A", "T8203C", "G8234A", "G8253C", "G8304C", "A8330G", "A8338G", "A8385G", "T8414G", "T8456C", "A8491C", "G8492T", "T8495C", "C8514T", "T8582A", "C8590G", "T8640C", "G8666A", "C8688A", "C8690T", "A8746T", "C8747T", "G8804A", "G8805A", "A8814G", "A8829T", "A8834G", "G8864T", "C8873T", "G8886A", "C8888G", "A8894G", "T8913G", "C8921T", "C8934A", "T8939C", "G8942A", "A8980G", "T9068C"], "INT": ["A124N"], "RT-p51": ["S48E", "D86E", "D123E", "G196E", "A200T", "E203Q", "K211R", "L214F", "K277R", "I292V", "T294P", "V317A", "T322A", "M377S", "V381I", "V435I"], "RT-p66": ["S48E", "D86E", "D123E", "G196E", "A200T", "E203Q", "K211R", "L214F", "K277R", "I292V", "T294P", "V317A", "T322A", "M377S", "V381I", "V435I", "K476Q", "S515A"], "gp120": ["-5H", "D34E", "H57Y", "N64H", "E78A", "K93Q", "-106S", "N108-", "-112F", "-114S", "-115S", "-116S", "-122E", "-123K", "G124R", "K127Q", "E136V", "S145T", "I156V", "N158D", "N159S", "S160N", "R164Y", "K212H", "V227A", "A253I", "E262D", "K265Q", "T308A", "D309K", "N312D", "Q315R", "K316E", "T319K", "N327-", "T329K", "A334T", "-368N", "N369W", "-370N", "-379N", "-381W", "-382G", "N383T", "D384N", "T385E", "Q404R", "N432S", "N433T", "H472R", "K474R", "E479G"], "gp41": ["I24L", "H53Q", "K90R", "D110N", "Q119E", "N133G", "E143N", "R221G", "S239N", "G293S", "S299N", "V311I", "S317T", "R334T"], "nef": ["Q15E", "E50A", "A83G", "H116N", "Y135F", "E155K", "K158E", "S163C", "E174D", "V182M", "S191A", "L198M"], "p17": ["S15K", "K28Q", "R30K", "W86K", "R91G", "K95R"], "p2": ["S10Q", "S11T", "-12N", "I13V", "M14L"], "p24": ["S14P", "E45D", "A47C", "I58V", "E79D", "T110N", "L111I", "V135I", "T200S", "P207Q"], "p6": ["P30Q", "G34E"], "p7": ["Q9R", "T11I"], "pro": ["R14K", "E35A"], "rev": ["T18I", "K39R", "I109L", "G111E"], "tat": ["L3P", "S7N", "Q17R", "R62C", "P84Q"], "vif": ["Y30H", "K36R", "F39M", "Q122K", "E134D", "A137T", "T157G", "K159N"], "vpr": ["T19A", "L22T", "H28Q", "E58L", "R85P", "G94S"], "vpu": ["E5Q", "K38Q", "D40S", "T63K", "-69D", "-70D", "-71N", "-72I", "-73L"]}, "labels": {"aa": "INT: A124N; RT-p51: S48E, D86E, D123E, G196E, A200T, E203Q, K211R, L214F, K277R, I292V, T294P, V317A, T322A, M377S, V381I, V435I; RT-p66: S48E, D86E, D123E, G196E, A200T, E203Q, K211R, L214F, K277R, I292V, T294P, V317A, T322A, M377S, V381I, V435I, K476Q, S515A; gp120: -5H, D34E, H57Y, N64H, E78A, K93Q, -106S, N108-, -112F, -114S, -115S, -116S, -122E, -123K, G124R, K127Q, E136V, S145T, I156V, N158D, N159S, S160N, R164Y, K212H, V227A, A253I, E262D, K265Q, T308A, D309K, N312D, Q315R, K316E, T319K, N327-, T329K, A334T, -368N, N369W, -370N, -379N, -381W, -382G, N383T, D384N, T385E, Q404R, N432S, N433T, H472R, K474R, E479G; gp41: I24L, H53Q, K90R, D110N, Q119E, N133G, E143N, R221G, S239N, G293S, S299N, V311I, S317T, R334T; nef: Q15E, E50A, A83G, H116N, Y135F, E155K, K158E, S163C, E174D, V182M, S191A, L198M; p17: S15K, K28Q, R30K, W86K, R91G, K95R; p2: S10Q, S11T, -12N, I13V, M14L; p24: S14P, E45D, A47C, I58V, E79D, T110N, L111I, V135I, T200S, P207Q; p6: P30Q, G34E; p7: Q9R, T11I; pro: R14K, E35A; rev: T18I, K39R, I109L, G111E; tat: L3P, S7N, Q17R, R62C, P84Q; vif: Y30H, K36R, F39M, Q122K, E134D, A137T, T157G, K159N; vpr: T19A, L22T, H28Q, E58L, R85P, G94S; vpu: E5Q, K38Q, D40S, T63K, -69D, -70D, -71N, -72I, -73L"}}}]}]}]}]}, {"name": "CRF02_AG_NODE_0000043", "node_attrs": {"div": 0.10299, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A762G", "T852A", "T3358C", "A4581G", "C5221T", "G5359C", "G5448A", "T5462A", "G6225A", "A6261T", "A6318C", "G6466T", "-6833A", "-6834A", "A6987-", "C6991-", "C6993-", "A7020C", "A7158G", "G7225A", "G7426A", "T7462G", "A7470G", "T7692C", "A8032T", "A8385C", "G8558A", "G8762A"], "INT": ["K269R"], "gp120": ["E136V", "Q155P", "E204N", "Q389P", "N435S"], "gp41": ["H53Q", "K56R", "I130T", "T192N"], "nef": ["Y81F", "D177E"], "p17": ["T67A"], "p24": ["S41T"], "rev": ["T62S"], "vpr": ["R85P"]}, "labels": {"aa": "INT: K269R; gp120: E136V, Q155P, E204N, Q389P, N435S; gp41: H53Q, K56R, I130T, T192N; nef: Y81F, D177E; p17: T67A; p24: S41T; rev: T62S; vpr: R85P"}}, "children": [{"name": "CRF02_AG_NODE_0000044", "node_attrs": {"div": 0.10867, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T201G", "A353G", "T531C", "C635T", "T1329A", "G1424A", "C1571T", "C2464A", "T3049C", "A3124G", "G3664A", "G4727A", "A4976T", "T5006C", "A5094G", "C5149T", "T5314C", "G5594A", "A5602T", "-5826T", "A5867C", "-6179A", "T6181C", "A6283G", "T6457G", "G6490A", "C6496T", "A6800C", "C6810A", "-6835C", "-6956A", "-6969G", "-6971A", "-6972A", "-6973T", "-6974A", "A6989-", "A6990-", "-6996A", "A7210G", "T7255A", "C7597T", "C7690A", "G8105A", "C8277T", "C8321T", "C8323A", "A8503C", "C8531A", "A8584T", "C8607T", "A8608T", "A8784C", "A8834G", "G8882A", "G8977A", "A8978C", "C8979A", "A9023C", "A9042G", "C9073T"], "RT-p51": ["D123E"], "RT-p66": ["D123E"], "gp120": ["-110T", "-124E", "D157E", "N201K", "K316Q", "T319E", "A334T", "-373N", "T380-"], "gp41": ["D129E", "A268T", "A325V"], "nef": ["D54A", "H89F", "M148L"], "p17": ["S66P"], "p24": ["S200T"], "rev": ["S86N"], "vif": ["R130S", "T170A", "S188L"], "vpu": ["D81N"]}, "labels": {"aa": "RT-p51: D123E; RT-p66: D123E; gp120: -110T, -124E, D157E, N201K, K316Q, T319E, A334T, -373N, T380-; gp41: D129E, A268T, A325V; nef: D54A, H89F, M148L; p17: S66P; p24: S200T; rev: S86N; vif: R130S, T170A, S188L; vpu: D81N"}}, "children": [{"name": "MH078543", "node_attrs": {"div": 0.15218, "accession": "MH078543", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GW"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DE00214GW007"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A224G", "G256-", "G378C", "C379A", "A380G", "A461G", "A499G", "A530G", "C535A", "A543G", "A548G", "A585G", "C586T", "C587T", "A609G", "T636G", "A654G", "T655C", "C668T", "T771C", "A815G", "A836G", "G866A", "T890C", "C897T", "G956A", "C964T", "T979C", "T992G", "C1040T", "A1250G", "T1262C", "A1292G", "G1302A", "C1342G", "C1351A", "A1415T", "G1430A", "A1448T", "G1472A", "G1487A", "G1495A", "C1556T", "G1562A", "T1613C", "T1749C", "C1752T", "G1839A", "A1879G", "A1908G", "T1954C", "C1960T", "C1985A", "T1986A", "A2032G", "G2074A", "T2080C", "A2154G", "A2191G", "A2239T", "A2254G", "C2281T", "A2293G", "G2341A", "C2353T", "C2365T", "A2459G", "A2569C", "C2589T", "G2602A", "C2613G", "C2638T", "T2708C", "A2728G", "T2737A", "T2779A", "T2854C", "A2975G", "G2980A", "T3034A", "A3043G", "C3067T", "A3109G", "G3127A", "A3151G", "T3256C", "G3293A", "G3385A", "C3415T", "G3427A", "A3487G", "T3496C", "T3497A", "G3508A", "C3550A", "T3551C", "A3562G", "G3616T", "G3617T", "G3630A", "A3637G", "T3652C", "A3684G", "T3746C", "A3760G", "C3763T", "G3766A", "A3772G", "A3805G", "C3857T", "A3866G", "T3977C", "C4072T", "C4132T", "C4138T", "G4145A", "C4146A", "T4234C", "A4256C", "T4291G", "A4385C", "A4420G", "A4646T", "A4664G", "A4677G", "A4693G", "A4696G", "A4709G", "G4774A", "T4805G", "C4826T", "A4854C", "A4858T", "A4861G", "G4864A", "C4902T", "C4914T", "G4923A", "T4940G", "A5008C", "G5009A", "A5015C", "G5018T", "C5019T", "A5021G", "T5027C", "T5043C", "T5047C", "C5056A", "G5059A", "G5090A", "G5143A", "A5167G", "T5188A", "T5264C", "G5267A", "A5268C", "G5276A", "A5277T", "A5305G", "T5384C", "T5391C", "C5412T", "A5463G", "A5555C", "A5557C", "A5613T", "C5614T", "A5656T", "G5668A", "C5679T", "A5685C", "T5690C", "A5721G", "T5736A", "A5742G", "T5796C", "G5805A", "-5812G", "-5817G", "-5818T", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5827T", "T5836G", "G5845A", "T5851G", "T5857A", "-5864G", "A5868T", "-5869T", "T5870A", "T5871G", "C5878T", "C5949G", "C5974T", "C5989T", "C6023G", "A6030G", "T6046C", "A6066G", "C6101T", "-6164T", "-6165C", "-6166T", "-6167A", "-6169C", "-6170T", "-6171T", "-6172G", "-6173A", "-6174G", "-6175C", "-6180A", "T6184C", "A6186G", "-6189G", "-6192A", "-6195C", "-6198C", "-6199T", "-6200C", "-6201G", "-6202C", "-6203A", "-6204A", "-6205T", "-6206A", "-6207T", "-6208A", "-6210C", "-6211T", "-6212A", "-6213T", "-6214G", "-6215G", "-6216A", "-6217A", "-6218A", "-6219T", "-6220G", "A6221C", "G6226A", "A6229G", "C6238T", "G6260A", "T6263A", "A6265G", "G6267A", "T6295C", "G6303A", "A6304G", "A6323G", "-6338A", "A6339C", "-6340T", "T6373G", "G6403T", "A6489C", "C6548T", "A6574G", "C6601T", "C6607T", "C6612T", "T6637G", "G6638A", "A6649C", "T6652C", "A6654C", "T6655G", "A6659T", "C6660T", "A6668G", "A6669G", "C6670T", "A6683C", "A6706G", "G6712A", "C6729G", "G6742A", "C6758T", "A6765T", "G6771A", "A6780C", "A6809G", "A6818C", "G6819A", "T6829C", "-6830C", "-6831A", "-6832G", "A6836G", "A6837C", "A6839T", "C6859T", "T6860G", "G6871A", "T6904C", "G6905A", "A6936G", "A6947G", "-6957C", "T6961C", "T6967C", "-6968A", "-6970C", "-6975T", "-6976C", "-6977A", "-6978G", "-6979C", "-6980A", "-6981G", "-6982C", "-6983T", "-6984C", "-6985A", "A6992-", "-6995G", "-6997A", "-6998T", "-6999C", "-7000A", "G7040A", "G7056A", "C7084T", "C7088T", "A7090C", "A7093G", "T7095A", "G7102A", "A7108G", "T7130C", "G7147A", "A7148G", "T7150C", "A7152T", "T7156C", "G7168A", "C7171T", "G7197A", "C7264T", "C7268A", "T7270G", "A7276G", "C7324T", "A7420G", "G7428A", "C7429T", "C7463A", "A7531G", "G7533A", "C7603T", "T7604G", "C7605A", "T7606C", "T7625C", "T7627G", "A7628G", "C7633G", "A7641G", "T7642A", "C7645T", "A7672G", "G7688C", "C7692T", "A7700G", "A7701G", "T7774C", "A7796T", "T7801A", "A7807G", "G7831A", "T7843G", "T7852A", "G7868A", "A7877G", "G7918T", "C7926T", "T7929C", "G7942A", "A7943C", "G7944A", "A7953G", "A7964G", "C7984A", "C8009A", "A8023G", "C8112T", "T8122C", "G8141A", "C8149T", "T8155C", "G8180A", "G8194A", "A8208G", "T8265C", "T8278A", "T8281G", "T8290C", "C8296T", "A8299C", "A8303G", "G8304T", "C8320T", "C8411T", "T8414C", "A8424C", "C8440T", "G8458A", "A8459G", "C8477T", "T8480C", "G8487C", "T8501A", "G8554A", "A8558G", "T8568C", "A8643G", "C8651A", "G8682A", "T8701A", "C8740T", "C8794A", "A8814C", "T8849C", "G8861A", "C8867T", "C8873A", "G8877C", "T8896A", "A8901C", "T8913A", "A8917G", "A8924G", "G8933A", "C8934A", "G9005A", "T9017C", "T9074C", "C9075T", "C9155T", "T9156G"], "INT": ["I31V", "A124N", "I161L", "I204L"], "RT-p51": ["K20R", "K122E", "T165I", "T173R", "F214L", "T294A", "A400T"], "RT-p66": ["K20R", "K122E", "T165I", "T173R", "F214L", "T294A", "A400T", "S468T", "Q507H", "A508S", "R512K", "K530R"], "gp120": ["N1K", "-5L", "L6R", "A32G", "H57D", "E59G", "N71S", "T104S", "-106L", "-107S", "-109N", "N111S", "-112S", "-114T", "-115T", "-116R", "-117N", "-118I", "-119T", "-120M", "-121E", "-122M", "-123Q", "V136I", "L137M", "R138K", "R150K", "N159D", "S160N", "S162T", "I173M", "E183D", "K212T", "A253V", "N261K", "E262K", "K265N", "N267T", "T269F", "N272G", "K277Q", "T292R", "H302Y", "N304I", "S306N", "K307R", "D309A", "R322Q", "-326Q", "N328A", "T329S", "S336A", "G351R", "K361G", "S365G", "-368T", "-370N", "-372S", "-374I", "-375S", "-376S", "-377S", "-381E", "-382S", "V396I", "R401K", "P412S", "V414E", "N433I", "R448K", "H472K"], "gp41": ["S42N", "R77K", "S101D", "Y108Q", "N109D", "D110E", "D113G", "E129Q", "T130I", "N133G", "T165S", "N166K", "M176I", "A189T", "N192A", "T208I", "L209P", "R214Q", "D217G", "R221G", "T270I", "E280K", "G293S", "N302S", "I321T", "R334V"], "nef": ["T28P", "A33V", "R39K", "A49P", "R71K", "I101V", "V114I", "F120Y", "T133I", "A151E", "E158Q", "M173I", "E179Q", "F185Y", "S187R", "F191I", "K192R", "V194M", "L198M"], "p17": ["A15Q", "E55G", "A67N", "T70A", "T84V", "I92V", "L101V", "I107A"], "p2": ["Q8H"], "p24": ["S14P", "A78V", "V83T", "H87Q", "V191I", "A204G", "P207Q"], "p6": ["S23P"], "p7": ["R10K"], "pro": ["R14K", "N37S", "L63N"], "rev": ["E32T", "K39R", "A54E", "I59V", "S92P", "G98E", "Q101*", "S103P", "G111E", "E116K"], "tat": ["L3P", "Q60P", "S61R", "P73S", "R78N", "G79R", "T82A"], "vif": ["I31V", "K36R", "D37G", "R63K", "H73Q", "K90Q", "Q91L", "K92R", "R93K", "H110Y", "D113N", "K141T", "V154A", "T157K", "R158K", "K159T", "S186N"], "vpr": ["H28Q", "W54R", "E55T", "E58I", "S96P"], "vpu": ["Q2H", "P3S", "I17L", "V21I", "I28T", "-74I", "-75V", "D80N", "L82V"]}, "labels": {"aa": "INT: I31V, A124N, I161L, I204L; RT-p51: K20R, K122E, T165I, T173R, F214L, T294A, A400T; RT-p66: K20R, K122E, T165I, T173R, F214L, T294A, A400T, S468T, Q507H, A508S, R512K, K530R; gp120: N1K, -5L, L6R, A32G, H57D, E59G, N71S, T104S, -106L, -107S, -109N, N111S, -112S, -114T, -115T, -116R, -117N, -118I, -119T, -120M, -121E, -122M, -123Q, V136I, L137M, R138K, R150K, N159D, S160N, S162T, I173M, E183D, K212T, A253V, N261K, E262K, K265N, N267T, T269F, N272G, K277Q, T292R, H302Y, N304I, S306N, K307R, D309A, R322Q, -326Q, N328A, T329S, S336A, G351R, K361G, S365G, -368T, -370N, -372S, -374I, -375S, -376S, -377S, -381E, -382S, V396I, R401K, P412S, V414E, N433I, R448K, H472K; gp41: S42N, R77K, S101D, Y108Q, N109D, D110E, D113G, E129Q, T130I, N133G, T165S, N166K, M176I, A189T, N192A, T208I, L209P, R214Q, D217G, R221G, T270I, E280K, G293S, N302S, I321T, R334V; nef: T28P, A33V, R39K, A49P, R71K, I101V, V114I, F120Y, T133I, A151E, E158Q, M173I, E179Q, F185Y, S187R, F191I, K192R, V194M, L198M; p17: A15Q, E55G, A67N, T70A, T84V, I92V, L101V, I107A; p2: Q8H; p24: S14P, A78V, V83T, H87Q, V191I, A204G, P207Q; p6: S23P; p7: R10K; pro: R14K, N37S, L63N; rev: E32T, K39R, A54E, I59V, S92P, G98E, Q101*, S103P, G111E, E116K; tat: L3P, Q60P, S61R, P73S, R78N, G79R, T82A; vif: I31V, K36R, D37G, R63K, H73Q, K90Q, Q91L, K92R, R93K, H110Y, D113N, K141T, V154A, T157K, R158K, K159T, S186N; vpr: H28Q, W54R, E55T, E58I, S96P; vpu: Q2H, P3S, I17L, V21I, I28T, -74I, -75V, D80N, L82V"}}}, {"name": "CRF02_AG_NODE_0000045", "node_attrs": {"div": 0.12024, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C435T", "A461C", "A512G", "C513A", "A534G", "C537A", "T571A", "A579G", "T590C", "G592A", "G593T", "A615G", "C697A", "C902T", "G998A", "T1001C", "G1016A", "A1034C", "A1101G", "G1184A", "G1271T", "G1328A", "T1444-", "A1445-", "C1446-", "A1447C", "T1452C", "C1453A", "C1454G", "-1455A", "-1456C", "-1457C", "G1493A", "A1697G", "G1972A", "A2113G", "G3220A", "A3529G", "C3542T", "T3644A", "T3946C", "A4096G", "A4111G", "A4555G", "A4686G", "G4694A", "C4803A", "A4855G", "A4993C", "C5062G", "G5075A", "C5162T", "T5260C", "G5330A", "C5397G", "G5444A", "A5448C", "G5715A", "T5739G", "G5808T", "-5824T", "-5825A", "-5827G", "A5833C", "A5962G", "T6007C", "A6044G", "T6097C", "C6116T", "T6160C", "-6164A", "-6166C", "-6167C", "T6187C", "-6195A", "T6244A", "T6246A", "A6251G", "G6253A", "G6286A", "G6290T", "T6322A", "A6333G", "-6338G", "-6340G", "G6346A", "T6347C", "T6466C", "A6553G", "G6581A", "A6599C", "C6838A", "-6957A", "A6963G", "-6976T", "-6994T", "-6998A", "-6999G", "-7000T", "C7008A", "A7032G", "G7366A", "T7699C", "T7715G", "G7765A", "C7878A", "A7880G", "T7888G", "A7891G", "A8111G", "C8251T", "C8291T", "A8407G", "G8490C", "C8491A", "G8534T", "G8666A", "G8717A", "A8922G", "T8947A", "T9040C", "A9128G"], "RT-p66": ["H483Y", "L517I"], "gp120": ["N105H", "-121T", "F131Y", "M133V", "A146S", "S162E", "V243M", "P263S", "-370S", "N383-", "K393R"], "gp41": ["S138A", "I193V", "N195K", "T270A", "R330C"], "nef": ["Q22R", "A50Q", "F191S", "F202Y"], "p17": ["E42D", "L60I", "L68I", "F79Y", "I82V", "W86Y", "I94V", "A121D"], "p2": ["V7A", "Q8T", "Q9N", "S10-", "N11-"], "p24": ["I124V", "E180D"], "rev": ["D88G"], "tat": ["S7R", "S23N", "K24N"], "vif": ["K34E", "H73N", "K90R", "Q136P", "K159R"], "vpu": ["D44E", "M67L"]}, "labels": {"aa": "RT-p66: H483Y, L517I; gp120: N105H, -121T, F131Y, M133V, A146S, S162E, V243M, P263S, -370S, N383-, K393R; gp41: S138A, I193V, N195K, T270A, R330C; nef: Q22R, A50Q, F191S, F202Y; p17: E42D, L60I, L68I, F79Y, I82V, W86Y, I94V, A121D; p2: V7A, Q8T, Q9N, S10-, N11-; p24: I124V, E180D; rev: D88G; tat: S7R, S23N, K24N; vif: K34E, H73N, K90R, Q136P, K159R; vpu: D44E, M67L"}}, "children": [{"name": "MH078542", "node_attrs": {"div": 0.16369, "accession": "MH078542", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GW"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DE00214GW005"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T131G", "T135-", "A138G", "T141C", "C143-", "C144-", "T145-", "C146-", "A147-", "G148-", "A149-", "C150-", "C151-", "A152-", "C153-", "T154-", "C155-", "T156-", "A157-", "G158-", "A159-", "C160-", "T161-", "G162-", "T163-", "G164-", "T165-", "A166G", "-167G", "A170G", "A171T", "C173-", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "C193T", "C200T", "G201C", "G205A", "T206G", "C213T", "G214T", "A215-", "A216-", "A217-", "C227A", "G256A", "A302T", "T303A", "G317A", "G386A", "T396C", "A412G", "G413C", "A418G", "G495A", "G519C", "C596T", "A605G", "C614T", "A619G", "A656G", "A671G", "A674G", "C698T", "A730T", "T771C", "G785A", "G791A", "A810G", "T858C", "A978G", "T983C", "G1078C", "A1106G", "G1109A", "G1173A", "T1174C", "A1190C", "T1229C", "A1277G", "G1388A", "G1394A", "G1405C", "G1474A", "A1492C", "C1536A", "C1556T", "G1567A", "G1586A", "C1615A", "A1642G", "A1643G", "T1646C", "G1661A", "G1685A", "G1687A", "C1693T", "T1722C", "G1730A", "A1743T", "T1749C", "C1752T", "T1754C", "A1770G", "G1848A", "C1864T", "T1895C", "G1901C", "T1954C", "A1963G", "T1986C", "A2023G", "C2057A", "A2154G", "A2178C", "A2203T", "C2211T", "A2212G", "T2236C", "T2245C", "G2273A", "G2362A", "G2389A", "G2431A", "A2455G", "A2459G", "C2485T", "G2548A", "C2638T", "G2710A", "A2716G", "C2720T", "A2722G", "G2725A", "A2734G", "A2743C", "T2758C", "A2773G", "A2788C", "G2833A", "A2864G", "A2937G", "G2946A", "A2969G", "C2978A", "C3023T", "A3043G", "G3071A", "A3097G", "A3142G", "A3162G", "G3166A", "T3197C", "G3205A", "A3230T", "T3256C", "G3398A", "A3403G", "T3436C", "C3469T", "T3472A", "G3477A", "T3497A", "G3631A", "A3637C", "G3643C", "A3646T", "T3746C", "A3769G", "C3799T", "A3817G", "T3853C", "G3891A", "T3904C", "C3922A", "T3990C", "A4030G", "A4076C", "A4112G", "G4151A", "A4153G", "C4180A", "G4273A", "T4282A", "A4315G", "A4498G", "T4543C", "T4585C", "T4656C", "G4695A", "T4738C", "A4760G", "T4772A", "G4816A", "A4861G", "G4870A", "A4878G", "T4886A", "C4889A", "C4911T", "C4914T", "T4959C", "G4975A", "T4976C", "G4986C", "C5006G", "G5014A", "A5033C", "G5036A", "T5047C", "A5049G", "G5060A", "T5072C", "G5146A", "A5159G", "G5215A", "C5237T", "A5248C", "A5268C", "G5276A", "A5277T", "A5278G", "A5336G", "C5351T", "T5384C", "C5412A", "G5418A", "A5431T", "T5451C", "A5461C", "G5561A", "T5616C", "A5621C", "A5632G", "A5643G", "C5679T", "T5687A", "A5689C", "G5700A", "A5711C", "A5720G", "G5739A", "T5836G", "T5837G", "T5841C", "A5843T", "A5865-", "A5866-", "-5869A", "C5878T", "G5902A", "T5986C", "A5995G", "A6009G", "C6023A", "A6037G", "T6046G", "C6143G", "-6165C", "-6169T", "-6180T", "A6186T", "A6188C", "-6189G", "-6192A", "-6198G", "-6199C", "-6200A", "-6201C", "-6202T", "-6203C", "-6204T", "-6205C", "-6206A", "-6207A", "-6208C", "-6210G", "-6211T", "-6212A", "-6213C", "-6214C", "-6215A", "-6216C", "-6217C", "-6218G", "-6219A", "-6220G", "A6221G", "A6225T", "G6226A", "A6229C", "A6232G", "T6261A", "A6262G", "T6263C", "A6276T", "G6283T", "G6303A", "C6318A", "A6322G", "A6323G", "T6325G", "A6326G", "T6328A", "G6329A", "G6336C", "C6446G", "G6451A", "T6460G", "G6463A", "C6483T", "C6523T", "A6525G", "A6573G", "G6577T", "A6578G", "A6616G", "G6634T", "C6641T", "A6647G", "A6648T", "T6658C", "T6667C", "C6670T", "C6752G", "G6774A", "G6779C", "C6790A", "A6791G", "C6797T", "A6799C", "G6805A", "A6814G", "G6823A", "C6826A", "T6827C", "A6848G", "C6859T", "T6895C", "G6905A", "G6935A", "C6938T", "C6949T", "-6968T", "-6970G", "-6975G", "-6993G", "-6995C", "-6997G", "C7006G", "T7015C", "C7016A", "G7033A", "A7043C", "A7046C", "C7087T", "A7090G", "G7101C", "G7102C", "G7106A", "A7107C", "C7114T", "A7123G", "A7129G", "T7130C", "A7144T", "T7172A", "G7181C", "G7182A", "G7190A", "G7197A", "T7222C", "C7250A", "C7268A", "T7270G", "A7276G", "A7459G", "G7477A", "A7552G", "C7564T", "A7590C", "A7628G", "T7630G", "A7676C", "G7677A", "A7701C", "G7712A", "A7714C", "G7754T", "A7791G", "A7799C", "T7801A", "A7807G", "T7843C", "G7888A", "C7926T", "T7929C", "A7953G", "C7984A", "A8002G", "C8009A", "G8019C", "T8032G", "T8210C", "T8223C", "A8254G", "G8255A", "A8264T", "G8276A", "A8323T", "G8329A", "G8330T", "T8332G", "T8348G", "A8360C", "C8425T", "G8436A", "C8471T", "T8492G", "T8501A", "A8604G", "A8636T", "T8645A", "A8647G", "C8648G", "A8655C", "C8690T", "A8750C", "C8751T", "A8762G", "A8795-", "G8796-", "A8797-", "G8798-", "G8799-", "T8800-", "A8807G", "G8808A", "C8809A", "A8812C", "A8827G", "A8844G", "T8849C", "A8870T", "C8873A", "A8874C", "T8913A", "T8914G", "A8917G", "G8942A", "T8993C", "T9068C", "T9092C", "C9093T", "T9115C", "C9133T", "G9136A"], "INT": ["S39N", "I72T", "I101L", "I113V", "V126M"], "RT-p51": ["K20R", "E28A", "E36D", "T39M", "V60I", "K122E", "I257V", "K281R", "R284K", "I292V", "L295M", "V326I", "K356R", "S379C", "V435I"], "RT-p66": ["K20R", "E28A", "E36D", "T39M", "V60I", "K122E", "I257V", "K281R", "R284K", "I292V", "L295M", "V326I", "K356R", "S379C", "V435I", "R461K", "S468T", "E514D", "E516D"], "gp120": ["-3Q", "E4-", "N52S", "H57N", "N64E", "L97V", "-109I", "N111I", "-112R", "-114N", "-115S", "-116T", "-117L", "-118N", "-119S", "-120T", "-122E", "-123E", "E124V", "E125D", "I126M", "V136E", "K141I", "K143N", "R150K", "P155Q", "I156M", "N158E", "S161T", "L198V", "D202E", "P210L", "K224R", "E240G", "E241D", "I242V", "I249L", "L260F", "K265V", "Q300E", "D309Q", "N312K", "T313A", "Q315Y", "E319K", "H324Q", "F325L", "N328K", "I332V", "G351R", "-368N", "-372W", "-374S", "-375S", "-376Q", "-377S", "-378N", "-379E", "-380N", "D384-", "T385-", "L388I", "N397H", "M398L", "R416T", "E418T", "F440I", "G443Q", "D446N", "R448K", "L466I", "H472K"], "gp41": ["M54L", "N96T", "N109E", "S125H", "N133T", "E137N", "A151S", "D163G", "N166Q", "T208I", "L209P", "D217G", "S239T", "I307T", "V318I", "I321L", "V325I", "L340F", "A343S"], "nef": ["T28I", "A32T", "E64A", "S88G", "E98D", "Y102W", "K105Q", "E152-", "V153-", "A156N", "N157T", "E158K", "N162S", "I168V", "E176D", "S191R", "K192R"], "p1": ["K4R"], "p17": ["K26S", "K28R", "A54T", "E62Q", "K95R", "I107M", "Y132F"], "p24": ["S14P", "I27V", "G116A", "V148T", "G225A"], "p6": ["S3N", "P5L", "F15L", "M17I", "T22S", "S23P", "R31G"], "p7": ["R3K", "Q9P", "L24I", "R34K", "T50N"], "pro": ["G17E", "E35Q", "L63P"], "rev": ["V16I", "I52V", "A54E", "E57D", "S62A"], "tat": ["L3P", "N12K", "T19S", "K29Q", "R62H", "P73S", "T82A"], "vif": ["D37N", "V51A", "R77K", "K92R", "S95N", "I98V", "D101E", "H110Y", "S130N", "E134Q", "N140K", "G143E", "V154A", "T155A", "R187H"], "vpr": ["T19A", "H45Y", "E48D", "E55A", "E58M"], "vpu": ["E5A", "I9V", "F27Y", "I28L", "K35T", "K38R", "L67I", "-69Y", "-70D", "-71N", "-72L", "-73G", "N79I"]}, "labels": {"aa": "INT: S39N, I72T, I101L, I113V, V126M; RT-p51: K20R, E28A, E36D, T39M, V60I, K122E, I257V, K281R, R284K, I292V, L295M, V326I, K356R, S379C, V435I; RT-p66: K20R, E28A, E36D, T39M, V60I, K122E, I257V, K281R, R284K, I292V, L295M, V326I, K356R, S379C, V435I, R461K, S468T, E514D, E516D; gp120: -3Q, E4-, N52S, H57N, N64E, L97V, -109I, N111I, -112R, -114N, -115S, -116T, -117L, -118N, -119S, -120T, -122E, -123E, E124V, E125D, I126M, V136E, K141I, K143N, R150K, P155Q, I156M, N158E, S161T, L198V, D202E, P210L, K224R, E240G, E241D, I242V, I249L, L260F, K265V, Q300E, D309Q, N312K, T313A, Q315Y, E319K, H324Q, F325L, N328K, I332V, G351R, -368N, -372W, -374S, -375S, -376Q, -377S, -378N, -379E, -380N, D384-, T385-, L388I, N397H, M398L, R416T, E418T, F440I, G443Q, D446N, R448K, L466I, H472K; gp41: M54L, N96T, N109E, S125H, N133T, E137N, A151S, D163G, N166Q, T208I, L209P, D217G, S239T, I307T, V318I, I321L, V325I, L340F, A343S; nef: T28I, A32T, E64A, S88G, E98D, Y102W, K105Q, E152-, V153-, A156N, N157T, E158K, N162S, I168V, E176D, S191R, K192R; p1: K4R; p17: K26S, K28R, A54T, E62Q, K95R, I107M, Y132F; p24: S14P, I27V, G116A, V148T, G225A; p6: S3N, P5L, F15L, M17I, T22S, S23P, R31G; p7: R3K, Q9P, L24I, R34K, T50N; pro: G17E, E35Q, L63P; rev: V16I, I52V, A54E, E57D, S62A; tat: L3P, N12K, T19S, K29Q, R62H, P73S, T82A; vif: D37N, V51A, R77K, K92R, S95N, I98V, D101E, H110Y, S130N, E134Q, N140K, G143E, V154A, T155A, R187H; vpr: T19A, H45Y, E48D, E55A, E58M; vpu: E5A, I9V, F27Y, I28L, K35T, K38R, L67I, -69Y, -70D, -71N, -72L, -73G, N79I"}}}, {"name": "MN703132", "node_attrs": {"div": 0.15504, "accession": "MN703132", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GW"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DEURF14GW040"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["C4T", "T7C", "T10A", "G11C", "C12T", "T13-", "A14-", "G15-", "A16-", "C17-", "C18-", "A19-", "G20-", "A21-", "T22-", "T23-", "T24-", "G25-", "T30A", "G32A", "T39C", "T41G", "C48T", "G53A", "A159G", "G361C", "T362G", "A417C", "C467T", "G480A", "A509G", "A606C", "C614G", "C657A", "A676G", "G776A", "G803A", "G806A", "A869G", "A965C", "T979C", "C1013T", "G1022A", "C1136T", "T1220C", "T1245C", "T1262G", "G1265A", "C1331T", "T1403A", "G1404A", "T1422C", "A1507G", "A1601G", "G1657A", "G1694A", "T1741C", "C1825A", "T1826A", "G1839A", "A1908G", "A2005C", "A2007G", "T2035C", "C2149G", "G2215T", "T2257C", "A2305G", "T2542C", "C2613T", "A2665C", "G2682A", "G2683A", "C2723A", "T2737G", "A2842G", "G2902A", "G2909C", "A2918C", "G2921A", "C2930T", "A2956G", "C2978T", "A3059G", "T3118A", "A3136G", "A3151G", "A3165G", "A3200G", "G3211A", "G3218A", "C3225T", "G3264A", "A3279G", "C3294T", "T3303C", "G3304A", "G3307A", "G3439A", "A3442G", "C3449T", "T3496C", "A3522G", "G3523A", "A3578G", "A3685G", "C3712T", "G3766A", "C3773T", "T3779C", "G3808A", "A3901G", "G3916A", "G3925A", "A3985G", "A3989G", "A4066T", "A4114T", "C4117T", "A4130C", "G4131C", "C4140T", "A4189G", "A4423T", "T4426A", "C4569T", "G4622A", "G4685A", "T4702G", "T4703G", "A4748G", "T4912G", "G4949A", "A4988C", "C4996A", "G5018A", "A5051T", "T5148C", "G5170A", "A5173G", "C5214A", "T5221C", "T5292C", "G5382T", "C5406A", "A5463G", "C5478T", "C5511T", "C5538T", "C5542A", "A5548C", "C5551T", "G5556A", "T5582C", "A5640G", "G5644A", "C5655T", "A5661T", "A5685C", "A5702G", "A5703G", "A5787T", "T5788A", "T5789C", "T5791G", "C5792A", "C5793G", "A5794G", "C5795A", "T5796A", "C5797T", "T5799A", "A5800T", "T5801C", "G5802C", "A5806C", "G5809-", "G5810-", "G5811-", "-5812A", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819G", "-5820C", "-5821G", "-5822G", "-5823G", "T5826C", "A5840C", "A5842G", "G5845A", "-5864G", "-5869G", "G5881A", "C5884T", "T5911A", "A5945C", "G5954A", "A5957C", "T5964C", "T5980C", "A6065G", "A6066G", "A6073G", "C6083A", "T6148C", "-6165G", "-6169A", "-6170T", "-6171A", "-6172C", "-6173A", "-6174G", "-6175T", "C6178T", "-6180G", "T6184C", "-6189T", "-6192C", "C6196T", "A6197-", "A6209-", "A6222C", "A6276G", "A6277T", "G6311A", "G6368A", "G6391A", "T6436C", "A6442G", "A6484G", "A6489C", "T6536A", "G6575A", "G6593A", "C6599T", "A6605G", "G6611A", "C6619T", "A6628G", "A6635C", "G6638A", "C6641G", "T6643A", "A6648G", "C6661T", "C6673T", "G6689A", "A6716G", "C6729T", "A6730G", "G6743A", "T6745C", "A6754G", "A6776C", "C6777A", "A6781T", "A6788G", "C6807T", "A6809G", "C6812G", "A6818G", "G6820A", "C6824T", "T6828A", "C6835T", "C6840A", "A6841C", "T6846C", "A6858G", "T6860G", "T6875G", "T6932A", "T6958G", "T6964G", "C6966A", "-6968G", "-6970C", "-6975C", "-6977A", "-6978A", "-6979T", "-6980C", "-6981C", "-6982T", "-6983A", "-6984A", "-6985T", "-6986A", "-6987A", "-6988T", "-6989A", "-6990G", "-6991T", "-6993C", "-6995A", "-6997T", "A7002C", "C7006T", "C7014T", "A7044G", "T7045G", "G7056A", "T7095A", "G7106C", "A7108C", "A7120T", "C7124T", "A7148G", "A7149G", "A7155G", "T7156G", "G7158A", "A7160G", "C7161A", "A7162C", "A7163T", "A7164C", "T7165C", "G7168A", "G7182C", "A7225G", "A7255G", "A7275G", "A7339G", "A7345T", "G7428A", "C7463A", "C7498T", "C7576T", "T7609C", "C7651T", "A7691T", "C7692A", "A7693T", "A7711G", "T7774C", "A7782G", "G7790A", "A7846G", "C7932T", "A7998G", "C8005A", "T8047C", "G8050A", "C8065A", "G8134C", "T8153C", "T8155A", "G8158A", "T8159G", "C8172T", "A8173G", "A8196G", "A8222G", "C8296T", "G8335A", "G8388A", "C8494A", "G8537A", "C8543A", "T8594C", "C8775T", "C8784G", "G8808C", "C8809T", "A8814G", "A8829T", "G8886A", "T8887G", "C8888A", "G8893C", "T8903A", "T8914C", "C8921T", "T8973C", "A8980C", "G8981A", "C8985G", "T8988G", "C8990T", "A8991G", "C8992A", "G9005A", "T9074C", "C9075T", "T9095C", "C9133-", "A9134T", "G9135A"], "INT": ["M50I", "I72V", "S119P", "T122I", "Q216H", "A265V", "G283S"], "RT-p51": ["E40D", "T173I", "G196E", "L210M", "F214L", "A272P", "K275Q", "V276I", "T322A", "K357R", "T369A", "V375I", "T377I", "R390K", "K395R", "A400V", "M403T"], "RT-p66": ["E40D", "T173I", "G196E", "L210M", "F214L", "A272P", "K275Q", "V276I", "T322A", "K357R", "T369A", "V375I", "T377I", "R390K", "K395R", "A400V", "M403T", "K476R", "I495V"], "gp120": ["-5Q", "D19E", "K31Q", "D34N", "T35P", "V37A", "N64D", "N71G", "H77N", "T104S", "H105Q", "-106Y", "-107S", "-109S", "N113-", "-120I", "-122N", "-123T", "K141S", "V153I", "E157N", "N159D", "A172T", "K212T", "S228T", "E241K", "E247K", "I249F", "N251D", "A253T", "N261H", "E262K", "S263A", "K265R", "V279I", "T288A", "T292M", "D297N", "K307R", "T308Q", "N312D", "A318V", "Q320E", "R322G", "H324Y", "F325Y", "-326N", "N327K", "I332-", "N335S", "S336A", "L341V", "S360T", "K361E", "-368K", "-372N", "N373S", "-374T", "T385N", "T387I", "N397R", "R401K", "V414E", "E418H", "N432G", "N434R", "S435N", "T436D", "N437S", "G443A", "K474R"], "gp41": ["S42N", "T130Y", "N160S", "D163N", "T210I", "D232G", "Y284Q", "W286G", "S290L", "N298S", "I307V"], "nef": ["V16I", "Q50H", "T51N", "L148V", "A156L", "S163C", "E177D", "V182R", "R184T", "S187R"], "p1": ["S9N"], "p17": ["S9T", "K28Q", "G49S", "D93E", "Q108K", "K114R"], "p24": ["M15I", "V83T", "G225S"], "p6": ["I21T", "S24P", "P49Q"], "p7": ["-13R", "K14-"], "pro": ["L10I", "R14K", "N37S", "K69N", "K70R"], "rev": ["A8V", "D9E", "E11D", "R14K", "Y23H", "R53S", "S67P", "A68T", "L73I", "G96Q", "I102T", "S103T", "V104R", "I109V"], "tat": ["E2D", "T58P", "P59S", "V69A", "P75S"], "vif": ["F39W", "L109R", "E134D", "A137E"], "vpr": ["F15S", "P37Q", "I63T", "A93S"], "vpu": ["V13I", "K32R", "E60D", "L61T", "S62E", "T63E", "M65S", "G68M", "-70E", "-71S", "-72G", "-73Y", "-74D", "-75N", "-76L", "-77L", "D78A", "N79D", "D80N"]}, "labels": {"aa": "INT: M50I, I72V, S119P, T122I, Q216H, A265V, G283S; RT-p51: E40D, T173I, G196E, L210M, F214L, A272P, K275Q, V276I, T322A, K357R, T369A, V375I, T377I, R390K, K395R, A400V, M403T; RT-p66: E40D, T173I, G196E, L210M, F214L, A272P, K275Q, V276I, T322A, K357R, T369A, V375I, T377I, R390K, K395R, A400V, M403T, K476R, I495V; gp120: -5Q, D19E, K31Q, D34N, T35P, V37A, N64D, N71G, H77N, T104S, H105Q, -106Y, -107S, -109S, N113-, -120I, -122N, -123T, K141S, V153I, E157N, N159D, A172T, K212T, S228T, E241K, E247K, I249F, N251D, A253T, N261H, E262K, S263A, K265R, V279I, T288A, T292M, D297N, K307R, T308Q, N312D, A318V, Q320E, R322G, H324Y, F325Y, -326N, N327K, I332-, N335S, S336A, L341V, S360T, K361E, -368K, -372N, N373S, -374T, T385N, T387I, N397R, R401K, V414E, E418H, N432G, N434R, S435N, T436D, N437S, G443A, K474R; gp41: S42N, T130Y, N160S, D163N, T210I, D232G, Y284Q, W286G, S290L, N298S, I307V; nef: V16I, Q50H, T51N, L148V, A156L, S163C, E177D, V182R, R184T, S187R; p1: S9N; p17: S9T, K28Q, G49S, D93E, Q108K, K114R; p24: M15I, V83T, G225S; p6: I21T, S24P, P49Q; p7: -13R, K14-; pro: L10I, R14K, N37S, K69N, K70R; rev: A8V, D9E, E11D, R14K, Y23H, R53S, S67P, A68T, L73I, G96Q, I102T, S103T, V104R, I109V; tat: E2D, T58P, P59S, V69A, P75S; vif: F39W, L109R, E134D, A137E; vpr: F15S, P37Q, I63T, A93S; vpu: V13I, K32R, E60D, L61T, S62E, T63E, M65S, G68M, -70E, -71S, -72G, -73Y, -74D, -75N, -76L, -77L, D78A, N79D, D80N"}}}]}]}, {"name": "CRF02_AG_NODE_0000046", "node_attrs": {"div": 0.10567, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A159T", "C435A", "C1175T", "G1192A", "G1694A", "A3165G", "G3756A", "C4965G", "G5146A", "A5787T", "T5788A", "G6336C", "T6337-", "A6339-", "A6781G", "C6790A", "A6854G", "T6860C", "C6861A", "A7162-", "A7164-", "T7165-"], "RT-p51": ["T173A", "K357R"], "RT-p66": ["T173A", "K357R", "S554N"], "gp120": ["-116S", "S336H", "-376N", "N433S"], "gp41": ["R77K", "V264A"], "nef": ["Q35R", "D38E", "R39K", "F85V"], "p17": ["L34I"], "p24": ["R154K"], "vif": ["R63K", "D117E", "R187H"], "vpu": ["-69Y"]}, "labels": {"aa": "RT-p51: T173A, K357R; RT-p66: T173A, K357R, S554N; gp120: -116S, S336H, -376N, N433S; gp41: R77K, V264A; nef: Q35R, D38E, R39K, F85V; p17: L34I; p24: R154K; vif: R63K, D117E, R187H; vpu: -69Y"}}, "children": [{"name": "CRF02_AG_NODE_0000047", "node_attrs": {"div": 0.14281, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A49-", "G50A", "C160T", "-167A", "C200T", "C227A", "G407A", "A431G", "T485A", "A492T", "A509G", "A562G", "A599G", "C614G", "A615G", "A618C", "A656G", "G667A", "A671G", "A678G", "G696A", "C697A", "A797C", "C845A", "A852T", "G866A", "G920A", "T992G", "T1001C", "A1002C", "A1070G", "T1100C", "G1134A", "A1176G", "A1307G", "G1313A", "T1385C", "C1478T", "C1514T", "A1525G", "C1541T", "G1567A", "G1586A", "A1644C", "G1661A", "G1664A", "T1676C", "A1743G", "G1852A", "C1873T", "A1918G", "A1988T", "T2035C", "T2071G", "T2080A", "G2156A", "A2182G", "A2185G", "A2203G", "G2273A", "G2431A", "A2461G", "G2539A", "A2569C", "A2572T", "A2612G", "G2632A", "T2644C", "G2704A", "C2720T", "T2737C", "A2884G", "T2899C", "A2920G", "G2921A", "A2929G", "T2933A", "C2978A", "A3103G", "G3127A", "A3154G", "A3192G", "A3217G", "G3221A", "A3224T", "C3225T", "A3226G", "A3277G", "C3358T", "T3380C", "C3391A", "A3403G", "T3412C", "A3442G", "G3463A", "C3499T", "T3541C", "T3544C", "C3628T", "C3649G", "T3652C", "A3675G", "T3746C", "G3770A", "G3886A", "T3909A", "A3944G", "T3946C", "G4156A", "T4177C", "G4178A", "A4249G", "C4270T", "G4273A", "T4276A", "G4366A", "A4561G", "G4582A", "G4631A", "C4652T", "T4667C", "T4678A", "C4679A", "T4706C", "A4740T", "G4786C", "C4820T", "G4838A", "C4841A", "T4883C", "C4911T", "C4914T", "C4937A", "A4966C", "A4976G", "G4981A", "C4992T", "A4993C", "T5006A", "A5048G", "C5062A", "A5085C", "T5147C", "T5148A", "A5155G", "G5170A", "T5194A", "T5197C", "C5237T", "G5276A", "A5277G", "T5294C", "G5312A", "G5396A", "A5421G", "A5431G", "G5444A", "T5451C", "C5454T", "T5482A", "G5493A", "C5496A", "C5560T", "A5575C", "G5607A", "C5611A", "A5612C", "A5613T", "A5640C", "A5685G", "A5691T", "A5721G", "G5775A", "T5789C", "T5791G", "C5792A", "C5793A", "A5794G", "C5795A", "T5796A", "T5807G", "-5812C", "-5813A", "-5814T", "-5815G", "-5816A", "-5817T", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5825A", "-5826T", "-5827G", "-5864G", "A5896G", "G5907A", "A6022G", "A6024G", "A6065G", "A6158G", "T6160G", "A6182-", "-6189A", "-6192C", "C6196T", "-6199A", "-6200C", "-6201C", "-6202T", "-6203G", "-6204A", "-6212A", "-6213T", "A6221-", "A6222-", "A6223-", "A6232-", "T6242A", "T6252C", "G6253A", "G6260T", "A6262T", "T6263A", "T6287A", "G6303A", "C6305A", "G6329A", "-6337A", "T6358C", "A6367G", "C6397T", "G6463A", "A6465T", "T6466G", "A6489G", "G6577A", "T6586A", "A6595G", "C6601T", "C6619T", "G6634A", "G6640A", "C6641A", "A6654C", "T6655A", "C6660T", "C6661A", "T6667C", "T6694A", "C6721T", "G6742A", "G6767A", "A6770T", "G6771C", "T6772A", "G6774A", "A6776G", "C6777G", "G6779A", "C6797A", "A6801G", "G6823A", "A6839-", "A6900G", "C6925T", "T6932A", "G6935A", "G6940A", "-6956A", "-6957A", "A6960C", "T6961A", "A6963C", "T6964A", "C6966A", "-6968C", "-6969C", "-6986A", "-6987A", "-6988C", "-6996A", "-6998G", "-7000C", "C7006A", "C7018T", "A7057G", "G7072T", "G7094A", "G7101A", "A7120T", "A7132G", "A7144G", "G7147A", "A7152G", "A7154G", "T7159C", "G7168A", "C7171T", "T7192C", "C7324A", "A7447T", "C7463A", "G7533A", "C7561T", "T7609C", "T7630G", "G7657A", "A7672G", "A7706C", "A7741G", "C7762T", "A7799C", "T7801C", "G7835A", "T7852A", "C7878A", "G7918C", "A7935G", "A7947G", "G7957A", "C7960A", "G7977A", "T8032A", "T8047C", "T8091C", "T8092C", "C8103T", "A8163G", "T8167C", "T8239C", "A8254G", "G8268T", "G8276A", "A8288C", "C8336T", "T8348A", "C8351A", "G8354T", "C8385A", "G8388A", "C8412G", "T8414A", "C8440T", "A8446G", "T8456A", "G8458A", "G8487T", "C8514T", "C8531T", "G8561A", "T8595C", "C8669T", "T8701A", "A8746T", "A8807G", "A8814G", "A8829T", "T8847G", "G8848C", "C8873A", "A8915C", "T8947A", "G8977A", "A8978C", "C8979A", "T9029C", "T9060A", "T9068C", "A9128G", "A9134-", "G9135A"], "INT": ["L45Q", "S57G", "V135I", "D167E", "D286N"], "RT-p51": ["V21I", "V60I", "V276I", "C280S", "L295M", "K366R", "A376T", "T377L", "D432E"], "RT-p66": ["V21I", "V60I", "V276I", "C280S", "L295M", "K366R", "A376T", "T377L", "D432E", "E527G", "V559I"], "gp120": ["-5K", "R18K", "I56M", "H57R", "N71D", "N102E", "T104H", "-106I", "N108-", "-112T", "-114N", "-115S", "I126M", "S130T", "M133T", "V136F", "L137I", "Y145N", "R150K", "L151I", "S160N", "N204M", "K212R", "P263T", "N267T", "T269I", "V305I", "T308G", "D309N", "N312K", "Q315K", "K316R", "-326Q", "N328A", "T329-", "N349S", "S360T", "-368N", "N369-", "-375N", "-378N", "D384E", "M406I", "V414I", "R416K", "T436S"], "gp41": ["I135L", "N166H", "V178I", "H211R", "E215G", "G225E", "F263C", "A267V", "N287S", "G322V", "A325T", "I329L"], "nef": ["K4N", "Q15K", "V16I", "A33V", "A49P", "F120Y", "Y135F", "M148I", "S163C", "C169A", "F202Y"], "p1": ["I5L"], "p17": ["T53S", "K76R", "D93E", "I94V", "K95Q", "S111N", "T115A", "A121N"], "p24": ["T41S", "V83I", "H87Q", "I91L", "V135I", "S149G"], "p6": ["T22A", "S24P"], "p7": ["K20R", "R34K"], "pro": ["I64L"], "rev": ["K20N", "A37T", "S62T", "S67P", "C82H", "S107P"], "tat": ["S7N", "T19A", "S23N", "K24N", "L36I", "N40K", "R62G", "N67H", "T76A", "N80D", "G83D", "P84Q"], "vif": ["I31K", "S52C", "R67T", "H110Y", "Q127A", "R132K", "Q136S", "N140K", "K167Q", "S188T", "N190S"], "vpr": ["F15H", "H45Y", "E58R", "V70I"], "vpu": ["Q2T", "S62Y", "M67R", "-70D", "-71M", "-72G", "-74D", "-75D", "-76I", "-77L", "D81N"]}, "labels": {"aa": "INT: L45Q, S57G, V135I, D167E, D286N; RT-p51: V21I, V60I, V276I, C280S, L295M, K366R, A376T, T377L, D432E; RT-p66: V21I, V60I, V276I, C280S, L295M, K366R, A376T, T377L, D432E, E527G, V559I; gp120: -5K, R18K, I56M, H57R, N71D, N102E, T104H, -106I, N108-, -112T, -114N, -115S, I126M, S130T, M133T, V136F, L137I, Y145N, R150K, L151I, S160N, N204M, K212R, P263T, N267T, T269I, V305I, T308G, D309N, N312K, Q315K, K316R, -326Q, N328A, T329-, N349S, S360T, -368N, N369-, -375N, -378N, D384E, M406I, V414I, R416K, T436S; gp41: I135L, N166H, V178I, H211R, E215G, G225E, F263C, A267V, N287S, G322V, A325T, I329L; nef: K4N, Q15K, V16I, A33V, A49P, F120Y, Y135F, M148I, S163C, C169A, F202Y; p1: I5L; p17: T53S, K76R, D93E, I94V, K95Q, S111N, T115A, A121N; p24: T41S, V83I, H87Q, I91L, V135I, S149G; p6: T22A, S24P; p7: K20R, R34K; pro: I64L; rev: K20N, A37T, S62T, S67P, C82H, S107P; tat: S7N, T19A, S23N, K24N, L36I, N40K, R62G, N67H, T76A, N80D, G83D, P84Q; vif: I31K, S52C, R67T, H110Y, Q127A, R132K, Q136S, N140K, K167Q, S188T, N190S; vpr: F15H, H45Y, E58R, V70I; vpu: Q2T, S62Y, M67R, -70D, -71M, -72G, -74D, -75D, -76I, -77L, D81N"}}, "children": [{"name": "KY658712", "node_attrs": {"div": 0.16510999999999998, "accession": "KY658712", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "PK"}, "date": {"value": 2015.0}, "Strain_name": {"value": "DE00215PK035"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["A166G", "A263G", "A326G", "A470G", "A534G", "A566G", "T567C", "A584G", "A645C", "A654G", "A673C", "T771G", "A774G", "G776A", "G821A", "C950T", "T988C", "G1019A", "G1184A", "A1217G", "G1404A", "T1452C", "G1568A", "A1735C", "C1768A", "A1770G", "G1845A", "A2002G", "A2080G", "A2125G", "C2211T", "A2212G", "T2347C", "C2353T", "G2456C", "A2459G", "G2498A", "G2507C", "C2635A", "C2737A", "T2863C", "C2885T", "A3196G", "A3200G", "A3366G", "C3376T", "G3379A", "G3664A", "C3668T", "C3823T", "A4111G", "G4516A", "G4642A", "G4737A", "G4774A", "G4848C", "G4864A", "A4865C", "C4871T", "G4923A", "C5052T", "A5065G", "A5099G", "C5168T", "A5194G", "A5236G", "C5262A", "C5303T", "T5357C", "T5391C", "C5412T", "A5448C", "T5467G", "G5468C", "G5484A", "C5511T", "A5544C", "A5557G", "T5560G", "A5574G", "C5579T", "T5686C", "C5812T", "-5824T", "A5830G", "-5869A", "A5916T", "A6015G", "A6031G", "C6115T", "T6163-", "A6168-", "A6176-", "A6177-", "C6178-", "T6181-", "C6183-", "A6185C", "T6187C", "C6192T", "C6193A", "A6194T", "-6195C", "-6198G", "-6205C", "-6206A", "-6207C", "-6208A", "-6210A", "-6211C", "-6214A", "-6215T", "-6216C", "-6217T", "-6218A", "-6219G", "-6220A", "-6221T", "-6222C", "-6223T", "-6232G", "C6256T", "A6287G", "A6323G", "T6325A", "-6338T", "-6339A", "-6340T", "C6412T", "A6442G", "A6463C", "G6490C", "C6511T", "G6572A", "A6577C", "C6673T", "C6692A", "C6729T", "A6730G", "G6732A", "C6758T", "A6775G", "G6781T", "A6786C", "A6789G", "A6797G", "C6810T", "C6812A", "A6821G", "A6833C", "-6835G", "C6838T", "-6839G", "T6849A", "T6883C", "A6959G", "-6970A", "-6983T", "-6984C", "-6985T", "C6988T", "A6990G", "-6991C", "-6993G", "-6994C", "-6995T", "-6997T", "-6999G", "T7003C", "G7040A", "C7089A", "A7108G", "A7147T", "T7153C", "G7154T", "A7155C", "T7156G", "G7158A", "C7159G", "C7161A", "-7162T", "A7163-", "C7201T", "A7225G", "C7250T", "G7256A", "A7269C", "A7275G", "A7279G", "G7307A", "A7312T", "C7313G", "G7340T", "G7341C", "C7429T", "G7524C", "A7573G", "C7684T", "G7688A", "G7765A", "G7773A", "G7790A", "C7792A", "A7903T", "T7913C", "G8017C", "A8032G", "C8091G", "T8094C", "T8211G", "C8220T", "C8277G", "G8279A", "G8280T", "C8286T", "G8292T", "G8329A", "A8348G", "C8425A", "T8451C", "T8505A", "G8506T", "T8531G", "A8584T", "C8595G", "A8636T", "C8661G", "A8662G", "G8666C", "C8676T", "A8739G", "C8740T", "A8784C", "C8794T", "G8799A", "A8869C", "G8877C", "G8886A", "T8903C", "A8922G", "T9018C"], "RT-p51": ["T39M", "D121H", "K122E", "V135I", "E138Q", "F214L", "T369A", "K424R"], "RT-p66": ["T39M", "D121H", "K122E", "V135I", "E138Q", "F214L", "T369A", "K424R"], "gp120": ["E21V", "Q54R", "-107S", "-108R", "-109D", "-110T", "T112I", "N113S", "N114R", "S116E", "N145D", "D157E", "R164Y", "K203N", "R212S", "E240K", "E241D", "T292M", "G293D", "D294I", "H302Y", "N311T", "K312R", "K315E", "T319I", "Q320K", "K323E", "I332N", "-369A", "T371-", "-374T", "N376P", "-377S", "-379S", "T380S", "-381Y", "-382G", "V396I", "P412Q", "N432T", "S433T", "N437K", "V468I", "H472P", "K474R"], "gp41": ["V2I", "L4V", "G13S", "R74T", "N109K", "D129N", "S157N", "D163K", "L303W", "T306I", "T325S", "G326I", "A328V", "R330L"], "nef": ["T28K", "P49S", "C55I", "E98D", "Q107G", "E108D", "T133V", "I148L", "A151V", "V153I", "E176A", "E179Q", "V182I"], "p17": ["I104L", "I107V", "Q113P"], "p2": ["S10P"], "p24": ["S14A", "M15V", "V86A", "M96I", "G225S"], "p6": ["E19A", "P30Q", "R31G"], "pro": ["G16E"], "rev": ["E10A", "N20S", "E57Q", "T62A", "H82R"], "tat": ["C31A", "S61G", "P68L"], "vif": ["R19K", "V51I", "E88Q", "R93N", "D113N", "P156S", "K160R"], "vpr": ["T53N", "S96P"], "vpu": ["F27L", "-73Y"]}, "labels": {"aa": "RT-p51: T39M, D121H, K122E, V135I, E138Q, F214L, T369A, K424R; RT-p66: T39M, D121H, K122E, V135I, E138Q, F214L, T369A, K424R; gp120: E21V, Q54R, -107S, -108R, -109D, -110T, T112I, N113S, N114R, S116E, N145D, D157E, R164Y, K203N, R212S, E240K, E241D, T292M, G293D, D294I, H302Y, N311T, K312R, K315E, T319I, Q320K, K323E, I332N, -369A, T371-, -374T, N376P, -377S, -379S, T380S, -381Y, -382G, V396I, P412Q, N432T, S433T, N437K, V468I, H472P, K474R; gp41: V2I, L4V, G13S, R74T, N109K, D129N, S157N, D163K, L303W, T306I, T325S, G326I, A328V, R330L; nef: T28K, P49S, C55I, E98D, Q107G, E108D, T133V, I148L, A151V, V153I, E176A, E179Q, V182I; p17: I104L, I107V, Q113P; p2: S10P; p24: S14A, M15V, V86A, M96I, G225S; p6: E19A, P30Q, R31G; pro: G16E; rev: E10A, N20S, E57Q, T62A, H82R; tat: C31A, S61G, P68L; vif: R19K, V51I, E88Q, R93N, D113N, P156S, K160R; vpr: T53N, S96P; vpu: F27L, -73Y"}}}, {"name": "KX232616", "node_attrs": {"div": 0.16544, "accession": "KX232616", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "PK"}, "date": {"value": 2015.0}, "Strain_name": {"value": "PK024"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["T159C", "A242G", "G386A", "G455A", "C513A", "G518A", "T571A", "A576G", "A579G", "A645G", "G709A", "T782A", "A809G", "A833G", "C950A", "A968C", "A978C", "C1002T", "T1058C", "C1060A", "T1143C", "C1178T", "A1256G", "T1422C", "A1437G", "G1443A", "G1451A", "C1571T", "G1640A", "A1891T", "A2007G", "C2072T", "G2074T", "T2081G", "G2082A", "T2083C", "A2084C", "T2086A", "T2087C", "T2088A", "A2089C", "A2090C", "A2091T", "T2092G", "T2323C", "C2356T", "A2524G", "G2530A", "T2575C", "T2654C", "G2686A", "G2710A", "C2723T", "A2727G", "C2930T", "C2976T", "A3059G", "A3145G", "A3229G", "G3264A", "G3316A", "T3319-", "A3320-", "C3321-", "C3322-", "T3323-", "G3324-", "G3325-", "A3326-", "T3327-", "G3340A", "G3439A", "C3475T", "T3496C", "T3497A", "A3768G", "G3907A", "C4072T", "G4105A", "G4267A", "A4385C", "A4423G", "T4585C", "A4625G", "T4701G", "G4723A", "A4773G", "A4788G", "A5094G", "T5313C", "A5355C", "C5445T", "A5447C", "G5561C", "G5620A", "A5621T", "T5799C", "A5806G", "-5824G", "G5845A", "-5869G", "A5947T", "A5952T", "G6029A", "A6066G", "-6164C", "-6165A", "-6166T", "-6167A", "-6169T", "-6170G", "-6171T", "-6172T", "-6173A", "-6174C", "-6175C", "-6179A", "-6180A", "-6182T", "A6186G", "C6190T", "A6191T", "C6193T", "-6195G", "-6198T", "-6205G", "-6206G", "-6207G", "-6208G", "-6210T", "-6211G", "-6214G", "G6224-", "A6225-", "G6226-", "G6227-", "A6228-", "A6229-", "A6230-", "T6231-", "A6234C", "A6259C", "A6275C", "G6280A", "A6282G", "A6332G", "A6333G", "T6334G", "G6425A", "G6547A", "C6563T", "A6573G", "A6599T", "G6689A", "A6785G", "T6787G", "A6800G", "T6828C", "-6830C", "-6831C", "-6832G", "-6835T", "A6836G", "A6837C", "C6840-", "A6841-", "C6859A", "A6926G", "A6935C", "A6965C", "T6967A", "C6969T", "-6970C", "-6971A", "-6972A", "-6973C", "-6974A", "-6975A", "-6976T", "-6977G", "-6978A", "-6979C", "A6989G", "-6991G", "-6993C", "-6994A", "-6995G", "-6997G", "-6999A", "G7004A", "A7005C", "A7010C", "A7012T", "A7100G", "A7129G", "A7160T", "-7162G", "-7164A", "-7165T", "C7174T", "G7198A", "T7255A", "C7268A", "A7269G", "T7270G", "A7276G", "G7315A", "G7322T", "A7324G", "C7328A", "A7373G", "A7375G", "A7440G", "A7590G", "T7591G", "T7604A", "C7605G", "A7628G", "A7629G", "T7699C", "A7701C", "T7708A", "C7801A", "T7844C", "A7878G", "T7929G", "C7939G", "A7990C", "A8011C", "G8050A", "G8079A", "A8080C", "G8087A", "A8088C", "G8093A", "G8098A", "A8104T", "C8106T", "C8149T", "A8170C", "C8213T", "T8215C", "A8264G", "A8269G", "C8288T", "C8321T", "C8323A", "G8335A", "A8407G", "G8430A", "T8487C", "C8491G", "G8537C", "A8558G", "C8590G", "A8653G", "G8717A", "G8786A", "C8809T", "G8909A", "T8923G", "A8991G", "G9005A", "A9023C", "C9129T", "T9130C", "T9176-", "C9181A"], "INT": ["I204L", "R284G"], "RT-p51": ["K211R", "T294I", "T322A", "R390K", "T409-", "W410-", "I411-"], "RT-p66": ["K211R", "T294I", "T322A", "R390K", "T409-", "W410-", "I411-", "S468T", "K558R"], "gp120": ["K31N", "Y33F", "E59K", "D71G", "I106V", "N111-", "-117N", "-118S", "-119S", "-120I", "-121P", "-122E", "-124G", "E125M", "K127T", "K141Q", "K143R", "D157N", "N160G", "S161T", "S162-", "A191T", "E240G", "I249F", "V279I", "N309K", "N311E", "R316G", "F325S", "Q326P", "N335K", "N358D", "K361Q", "-372T", "-373Q", "-374L", "-377D", "-379E", "-381E", "-382D", "E384T", "I386L", "K416E", "N434D", "H472R"], "gp41": ["V7L", "L9I", "I24V", "K46R", "N96R", "N109G", "N133T", "H166Q", "N192S", "L209R", "H212Q", "Q229H", "R259H", "D262T", "C263S", "A264I", "A268V", "L304F", "I321V", "L329F"], "nef": ["Q22R", "V30I", "A50G", "E63D", "E65D", "F81Y", "A83G", "V85L", "K104R", "A156V", "V194R"], "p17": ["L60I", "M61I", "A67T", "F79Y", "T81A", "I82V", "I104V", "I107M", "S125N"], "p2": ["S5G", "V7I"], "p24": ["E79D", "I83L", "L91F", "T110N"], "pro": ["K70R", "Q92Y", "C95D", "T96P", "L97H", "N98L"], "rev": ["V16L", "P31A", "I55L", "A68T", "I78L", "R80N", "D84N", "S86C", "Q101*", "I108L"], "tat": ["N24T", "I36M", "G62S", "L74V", "T77S"], "vif": ["F39V", "S46N", "K63G", "T68A", "T170A"], "vpr": ["I70T", "I84L"], "vpu": ["E5I", "R67G", "Y69H", "-73D", "D75N", "D80N"]}, "labels": {"aa": "INT: I204L, R284G; RT-p51: K211R, T294I, T322A, R390K, T409-, W410-, I411-; RT-p66: K211R, T294I, T322A, R390K, T409-, W410-, I411-, S468T, K558R; gp120: K31N, Y33F, E59K, D71G, I106V, N111-, -117N, -118S, -119S, -120I, -121P, -122E, -124G, E125M, K127T, K141Q, K143R, D157N, N160G, S161T, S162-, A191T, E240G, I249F, V279I, N309K, N311E, R316G, F325S, Q326P, N335K, N358D, K361Q, -372T, -373Q, -374L, -377D, -379E, -381E, -382D, E384T, I386L, K416E, N434D, H472R; gp41: V7L, L9I, I24V, K46R, N96R, N109G, N133T, H166Q, N192S, L209R, H212Q, Q229H, R259H, D262T, C263S, A264I, A268V, L304F, I321V, L329F; nef: Q22R, V30I, A50G, E63D, E65D, F81Y, A83G, V85L, K104R, A156V, V194R; p17: L60I, M61I, A67T, F79Y, T81A, I82V, I104V, I107M, S125N; p2: S5G, V7I; p24: E79D, I83L, L91F, T110N; pro: K70R, Q92Y, C95D, T96P, L97H, N98L; rev: V16L, P31A, I55L, A68T, I78L, R80N, D84N, S86C, Q101*, I108L; tat: N24T, I36M, G62S, L74V, T77S; vif: F39V, S46N, K63G, T68A, T170A; vpr: I70T, I84L; vpu: E5I, R67G, Y69H, -73D, D75N, D80N"}}}]}, {"name": "CRF02_AG_NODE_0000048", "node_attrs": {"div": 0.11043, "clade_membership": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "T662G", "G791A", "A881G", "C902T", "C1782T", "A1907G", "A2007G", "A2203C", "G2462A", "C2723T", "A3200G", "G3205T", "T3207C", "A3279G", "A3454G", "G5709A", "T5964C", "G6029A", "G6076A", "-6166T", "C6183A", "-6219A", "A6276T", "G6311A", "T6328-", "G6490T", "A6716G", "T6733A", "A6788G", "A6809G", "A6825G", "T6875G", "T6958-", "T7015-", "A7108T", "T7150-", "A7701C", "T7715G", "A8011C", "T8094C", "T8171G", "G8330T", "A8424G", "C8425A", "A8636T", "G8799A", "T8849C", "C8934A"], "RT-p51": ["E36D", "D123N", "T369A", "E370D", "V371A", "K395R"], "RT-p66": ["E36D", "D123N", "T369A", "E370D", "V371A", "K395R", "L517I"], "gp41": ["M54L", "N133T", "S138A", "S290A", "A343S"], "p17": ["N109K"], "pro": ["N37D", "K70R"], "rev": ["I55L", "I108S"]}, "labels": {"aa": "RT-p51: E36D, D123N, T369A, E370D, V371A, K395R; RT-p66: E36D, D123N, T369A, E370D, V371A, K395R, L517I; gp41: M54L, N133T, S138A, S290A, A343S; p17: N109K; pro: N37D, K70R; rev: I55L, I108S"}}, "children": [{"name": "MF109709", "node_attrs": {"div": 0.14551, "accession": "MF109709", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GB"}, "date": {"value": 2013.0}, "Strain_name": {"value": "15228_1_71.3"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G367A", "A370G", "T377G", "A410G", "A492T", "A494C", "A497G", "A499T", "T531C", "A534G", "A540G", "A541G", "A569G", "A579C", "C587T", "C596T", "A609G", "A611G", "C614G", "A615G", "A692G", "G762A", "A774T", "G803A", "C823G", "G829A", "C830T", "T936C", "C1006A", "C1008G", "A1076G", "C1091T", "G1134A", "A1167T", "A1176G", "A1226G", "T1245C", "G1247A", "C1304T", "C1351A", "A1448G", "A1492G", "G1567A", "A1592G", "T1613C", "T1676C", "C1706T", "T1741C", "C1752T", "C1756T", "A1762C", "G1780A", "T1783A", "A1784T", "T1785-", "A1786-", "A1828C", "G1829-", "T1830-", "C1831-", "G1845A", "G1942A", "G1968A", "G1981A", "T2066C", "T2080C", "T2116C", "G2119A", "A2127C", "A2128G", "G2155A", "A2286G", "T2323C", "C2335T", "T2347A", "C2353T", "C2365T", "A2459G", "A2612G", "C2635T", "G2686A", "T2708C", "G2725A", "T2737A", "C2749T", "A2839C", "A2864G", "A2866C", "A2881G", "G2902A", "G2909C", "C2944T", "A2962G", "A3019G", "G3071A", "G3085A", "T3112C", "T3118A", "G3127A", "T3139C", "G3236A", "T3303G", "T3310C", "T3328C", "A3442G", "A3443T", "C3449A", "T3496C", "A3529G", "C3542T", "G3616A", "C3628T", "G3630A", "G3631A", "T3644G", "G3664A", "A3772G", "G3808A", "A3838G", "T3853C", "A3944G", "A3985G", "A3989G", "A4064G", "G4109A", "T4144C", "T4258C", "C4270T", "T4396C", "A4407G", "C4412T", "A4423G", "C4428T", "T4537G", "G4597A", "G4642A", "G4673A", "T4678G", "C4679A", "T4682C", "A4684G", "A4717T", "T4769-", "G4770-", "T4805G", "A4855G", "G4923A", "A5004-", "A5005-", "T5006-", "G5036A", "A5094G", "G5131A", "A5159G", "C5162T", "T5239C", "A5247C", "G5267A", "A5268C", "T5333C", "T5356C", "C5359G", "A5462G", "C5530T", "A5544C", "T5568C", "T5597-", "A5602T", "C5611-", "A5612-", "A5613-", "T5653G", "T5654G", "T5686C", "T5739A", "T5787C", "T5789C", "T5791G", "C5792A", "C5793A", "A5794G", "C5795A", "T5796A", "-5812A", "-5813T", "-5814G", "A5830G", "A5831C", "A5849T", "-5861G", "-5862A", "-5863A", "-5864G", "A5867-", "A5868-", "T5870-", "G5881A", "A6008G", "A6024C", "T6148C", "T6155C", "A6158G", "T6160A", "-6164C", "-6165A", "A6168-", "C6178T", "-6179T", "-6180G", "-6189C", "-6192G", "-6195G", "A6209-", "-6220C", "A6222T", "A6225G", "A6251G", "T6261A", "G6274A", "A6279G", "T6285A", "T6287A", "A6304C", "C6305A", "A6323-", "A6324-", "T6325-", "A6326-", "A6327-", "G6329-", "A6330-", "T6331-", "A6332-", "A6333-", "T6334-", "A6335-", "C6336-", "T6351C", "A6360C", "G6368A", "C6412T", "T6421C", "A6532G", "A6544G", "C6563T", "G6572A", "T6590G", "C6591T", "C6618A", "C6641A", "G6644A", "A6664G", "C6673T", "G6681T", "G6693C", "-6697G", "A6703-", "A6714G", "C6717T", "A6718G", "T6719A", "G6767A", "G6771A", "T6787A", "A6791C", "C6792T", "A6800C", "A6801G", "C6810T", "A6818G", "C6826T", "-6835T", "C6838G", "A6841C", "T6849C", "C6859A", "A6881G", "G6935A", "G6948T", "C6949A", "T6953-", "G6954-", "G6955-", "A6959-", "A6960-", "T6961-", "A6962-", "A6963-", "T6964-", "A6965-", "C6966-", "T6967-", "A6989-", "A6990-", "A6992-", "A7001-", "A7002-", "T7003-", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "A7010-", "T7011-", "A7012-", "A7013-", "C7014-", "A7032G", "A7043C", "G7072A", "C7088A", "C7089A", "G7094A", "A7120T", "C7127A", "A7148-", "A7149-", "A7151-", "A7152-", "T7153-", "A7154-", "A7155-", "T7156-", "A7157-", "G7158-", "T7159-", "A7160-", "C7161-", "A7163-", "C7250A", "G7310A", "G7311C", "C7313A", "G7390A", "A7402G", "T7408C", "A7419G", "A7459G", "G7462T", "G7470A", "G7477A", "G7533A", "A7573G", "C7603T", "C7605A", "C7645T", "T7666C", "C7723T", "G7765A", "A7822C", "T7865C", "C7878A", "G7915A", "G7918A", "C8147A", "A8152G", "T8155C", "C8189A", "G8268T", "G8279-", "G8280-", "T8281-", "A8282-", "G8283-", "A8284-", "G8285-", "C8286-", "T8287-", "A8288-", "T8289-", "T8290-", "C8291-", "G8292-", "C8293-", "A8294-", "A8295-", "C8296-", "A8297-", "T8298-", "A8299-", "C8300-", "C8301-", "T8302-", "A8303G", "C8311T", "C8315-", "A8316-", "G8317-", "A8341G", "A8370C", "A8408-", "A8409-", "C8410-", "C8411-", "C8412-", "C8413-", "T8414-", "C8415-", "A8455C", "G8490T", "C8491T", "T8495C", "A8522C", "C8531T", "G8532-", "A8533-", "G8537A", "A8540T", "C8607T", "G8627A", "G8666T", "C8771T", "A8795G", "A8869C", "C8873T", "T8895C", "T8896A", "C8906A", "A8922C", "C8951G"], "INT": ["S57G", "I72V", "T97A", "V112I", "K211R", "T218I", "N254K"], "RT-p51": ["K11T", "K64R", "K122E", "F214L", "E248D", "I257V", "A272P", "V326I", "V381I", "M403R"], "RT-p66": ["K11T", "K64R", "K122E", "F214L", "E248D", "I257V", "A272P", "V326I", "V381I", "M403R", "T450S", "L452I", "H483Y", "R512K", "I517V"], "gp120": ["-3E", "L6-"], "gp41": ["G3T", "L4M", "Q39R", "Q53H", "R56K", "S101Y", "F188L", "R276H", "L277R", "L282I", "L296I", "G322V", "A328I", "I329R", "R330-", "N331-", "I332-", "P333-", "R334-", "R335-", "I336-", "R337-", "Q338-"], "nef": ["I10L", "T23-", "P24-", "P25-"], "p17": ["G11E", "K12R", "D14E", "T53S", "E55V", "S66P", "K69G", "I82L", "I92V", "D93E", "I94V"], "p24": ["V11I", "M15L", "A31G", "S33N", "V83I", "P92Q", "P93A", "I115M", "V135I", "S146C", "S149G", "P207Q"], "p6": ["I21T", "P25L", "Q28P", "G34E", "L35Y", "Y36-"], "p7": ["Q9R", "R34K"], "pro": ["L10F", "V11-", "G16E", "R57K"], "rev": ["E10A", "I18T", "P100H", "I102V", "S103P", "T114N"], "tat": ["K29R", "R52W"], "vif": ["R4K", "R19K", "M29I", "I31R", "K33R", "Y44F", "A62-"], "vpr": ["T19A", "E48A", "E55T", "I84T", "P85R"], "vpu": ["P3L", "L4E", "E5-", "F16G", "F27L", "D44E", "S62L", "Y69M"]}, "labels": {"aa": "INT: S57G, I72V, T97A, V112I, K211R, T218I, N254K; RT-p51: K11T, K64R, K122E, F214L, E248D, I257V, A272P, V326I, V381I, M403R; RT-p66: K11T, K64R, K122E, F214L, E248D, I257V, A272P, V326I, V381I, M403R, T450S, L452I, H483Y, R512K, I517V; gp120: -3E, L6-; gp41: G3T, L4M, Q39R, Q53H, R56K, S101Y, F188L, R276H, L277R, L282I, L296I, G322V, A328I, I329R, R330-, N331-, I332-, P333-, R334-, R335-, I336-, R337-, Q338-; nef: I10L, T23-, P24-, P25-; p17: G11E, K12R, D14E, T53S, E55V, S66P, K69G, I82L, I92V, D93E, I94V; p24: V11I, M15L, A31G, S33N, V83I, P92Q, P93A, I115M, V135I, S146C, S149G, P207Q; p6: I21T, P25L, Q28P, G34E, L35Y, Y36-; p7: Q9R, R34K; pro: L10F, V11-, G16E, R57K; rev: E10A, I18T, P100H, I102V, S103P, T114N; tat: K29R, R52W; vif: R4K, R19K, M29I, I31R, K33R, Y44F, A62-; vpr: T19A, E48A, E55T, I84T, P85R; vpu: P3L, L4E, E5-, F16G, F27L, D44E, S62L, Y69M"}}}, {"name": "AB286857", "node_attrs": {"div": 0.14798, "accession": "AB286857", "clade_membership": {"value": "CRF02_AG"}, "country": {"value": "GH"}, "date": {"value": 2003.0}, "Strain_name": {"value": "03GH182AG"}, "LANL_subtype": {"value": "CRF02_AG"}}, "branch_attrs": {"mutations": {"nuc": ["G43A", "G52A", "C96A", "C155T", "G158C", "T161A", "T201G", "C227T", "T303-", "A399C", "A417C", "G480A", "A509G", "C513A", "A521G", "A534T", "C539T", "G542A", "A579G", "A599G", "A617T", "A619G", "A654G", "A671G", "A730T", "T824G", "A978G", "A980G", "A1101G", "T1181C", "C1187T", "G1271T", "T1296C", "T1329A", "T1334C", "T1452C", "-1455A", "-1456A", "-1457C", "A1459T", "C1460A", "A1463G", "G1508A", "G1568A", "A1580G", "A1656C", "G1657A", "A1670G", "T1679C", "T1722G", "-1746T", "-1747C", "-1748C", "T1749C", "C1751T", "C1756A", "A1758-", "A1759-", "G1760-", "A1781G", "A1784G", "A1794G", "A1819G", "A1927G", "A1969G", "G1972A", "A1990G", "C2057A", "G2173A", "A2179G", "C2199A", "A2210G", "C2211A", "A2212T", "A2241G", "A2243G", "G2248A", "G2273A", "A2368G", "A2374T", "T2443C", "G2498A", "T2542C", "C2613A", "A2615C", "A2656G", "C2720T", "A2752G", "C2828G", "G2830A", "G2878A", "T2917C", "A2925G", "A2969G", "A2971T", "C3067A", "A3145G", "G3166A", "G3218A", "G3220A", "A3224G", "C3225T", "C3232T", "A3238G", "A3280G", "A3283G", "G3508A", "C3545T", "T3551C", "A3571G", "A3601C", "A3637T", "T3644A", "A3654T", "A3665G", "A3675G", "A3769G", "C3787T", "G3925A", "C3995T", "G3997A", "A4066T", "G4105A", "A4153G", "G4156A", "T4543G", "G4581A", "A4650C", "T4672A", "T4701G", "T4706C", "G4708T", "A4711C", "C4715T", "A4720C", "G4727C", "A4735G", "G4774A", "G4786A", "A4811G", "A4862C", "C4937A", "C4943A", "A5004T", "A5005C", "T5029G", "A5049C", "A5051T", "C5052T", "G5060A", "A5099G", "C5111A", "T5188A", "T5203C", "G5215A", "T5221C", "C5242T", "G5276A", "A5277G", "C5280T", "G5312A", "G5375A", "T5384C", "C5397A", "G5418A", "G5444A", "G5484A", "A5535C", "G5537A", "A5548C", "G5558A", 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"T8203C", "A8207G", "G8216A", "T8223C", "C8238G", "C8251T", "T8257G", "A8264T", "G8276A", "C8277T", "C8291T", "C8320G", "A8402G", "C8415A", "A8446G", "T8456A", "G8458A", "A8459G", "C8471T", "T8492C", "G8499C", "A8584T", "C8590G", "T8595G", "C8597A", "C8676T", "G8682A", "C8720T", "A8762G", "G8793T", "G8818A", "T8832C", "G8871C", "T8903C", "A8904C", "A8915G", "A8916G", "T8923A", "A8930C", "G8931A", "A8932T", "G8933A", "T8993C", "G8994A", "T9018G", "C9078T", "G9137A"], "INT": ["M50I", "D256E", "R269K"], "RT-p51": ["T35K", "T39D", "K49R", "I50V", "V60I", "V135I", "A173K", "K174Q", "Q245E", "K277R", "I292V", "D324E", "V375I", "T377V"], "RT-p66": ["T35K", "T39D", "K49R", "I50V", "V60I", "V135I", "A173K", "K174Q", "Q245E", "K277R", "I292V", "D324E", "V375I", "T377V", "E514D", "Q520L", "K524E", "E527G"], "gp120": ["-3K", "E4-", "-5K", "D34E", "T35K", "V37A", "E59K", "N64E", "K89M", "N105F", "-106P", "-107K", "-109R", "N111-", "N113-", "-114S", "-115I", "-117D", "-118E", "-119M", "-123K", 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["F15V", "S24P", "-26Q", "K27-", "T39A", "N47S"], "pro": ["I64M"], "rev": ["D7T", "E11D", "A15T", "R17K", "R53S", "I59F", "S67P", "C82S", "E87Q", "S99G", "V104G", "S106P", "G111E"], "tat": ["L3P", "S7R", "S23N", "R54H", "T58P", "S61N", "K71E", "P75S", "T76P", "K85E", "E86K", "S87Q"], "vif": ["N22H", "M29K", "F39V", "R41I", "H42P", "E45A", "R47S", "K50R", "R67K", "K92N", "Q127E", "N140S", "L148W", "T155P", "P156S", "K159T", "N175K"], "vpr": ["H28Q", "E58R", "A59V", "V70I"], "vpu": ["E5A", "F27Y", "I28L", "R41W", "D58E", "-70D", "-71N", "-72I", "-73L", "-74D", "-75A", "D78-", "N79-"]}, "labels": {"aa": "INT: M50I, D256E, R269K; RT-p51: T35K, T39D, K49R, I50V, V60I, V135I, A173K, K174Q, Q245E, K277R, I292V, D324E, V375I, T377V; RT-p66: T35K, T39D, K49R, I50V, V60I, V135I, A173K, K174Q, Q245E, K277R, I292V, D324E, V375I, T377V, E514D, Q520L, K524E, E527G; gp120: -3K, E4-, -5K, D34E, T35K, V37A, E59K, N64E, K89M, N105F, -106P, -107K, -109R, N111-, N113-, -114S, -115I, -117D, -118E, -119M, -123K, -124E, K141I, V153I, S160T, S162N, T174K, P210T, K212N, K224R, I242V, I244V, N261D, K265R, K277Q, T288A, D294E, Q300K, H302Y, K307R, T308K, N312E, T319A, H324R, F325L, N328I, L341V, K361G, -368E, -370S, -372A, -373S, -374S, -375T, -377V, -378S, N383T, T385I, T387E, P389K, R401K, E418D, N434S, S435A; gp41: F8L, K46R, K77G, I84L, L91I, N96T, N109D, D129N, N160T, D163G, K172R, N192T, N195K, V197A, T210I, H211P, E220G, R221K, I222T, F263L, W286G, G293S, Q294R, N302D, D305N, I307T, A312G, I321L, A325I, R330C; nef: I20M, P25T, T28E, A53P, E63D, A83G, E98D, V114I, A151S, V153I, E158K, G159E, E177H, S188R, F191L, K192E, V194K, E197I, L198M; p1: S9H; p17: K28Q, G49S, L60I, A67S, I82V, K95R, I107V, Y132F; p2: S10P, -12I, I13M; p24: I124V, E180D, S200T; p6: F15V, S24P, -26Q, K27-, T39A, N47S; pro: I64M; rev: D7T, E11D, A15T, R17K, R53S, I59F, S67P, C82S, E87Q, S99G, V104G, S106P, G111E; tat: L3P, S7R, S23N, R54H, T58P, S61N, K71E, P75S, T76P, K85E, E86K, S87Q; vif: N22H, M29K, F39V, R41I, H42P, E45A, R47S, K50R, R67K, K92N, Q127E, N140S, L148W, T155P, P156S, K159T, N175K; vpr: H28Q, E58R, A59V, V70I; vpu: E5A, F27Y, I28L, R41W, D58E, -70D, -71N, -72I, -73L, -74D, -75A, D78-, N79-"}}}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000886", "node_attrs": {"div": 0.05785, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["T24-", "-711A", "T1403C", "-1452A", "A1486G", "G1720A", "G1772A", "A1777G", "G1846A", "C2057A", "C2211A", "C2281T", "T2299C", "A2332G", "G2392T", "T2653C", "G2693A", "A2715C", "A2716T", "C2839A", "A3031C", "T3541C", "A3772G", "T4391A", "C4412T", "A4696G", "G4861A", "A4892G", "C5160T", "A5161G", "G5371T", "C5432A", "A5612C", "A5625C", "G5626T", "C5655A", "A5658C", "G5659T", "C5679T", "A5707C", "A5712G", "T5739G", "G5843A", "G5845A", "T5887C", "A6087C", "-6226A", "A6605G", "-7001A", "-7003T", "-7005A", "-7164C", "G7426A", "C7433T", "T7627G", "T7852A", "C7921T", "G7942A", "A7943G", "C7950T", "A7962G", "A7992G", "C8005G", "T8507C", 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"T4697-", "G4782A", "A4784C", "G4802A", "T4805G", "C4820T", "C4826T", "C4844T", "G4856A", "A4861G", "A4878G", "G4892A", "T4916A", "G4971A", "G4975T", "C4978A", "C5006T", "A5015G", "C5056A", "G5060A", "G5128A", "G5140A", "G5212A", "T5260C", "C5334A", "A5336T", "T5357C", "T5371G", "T5451C", "C5491A", "A5495C", "C5511A", "C5551T", "T5600C", "A5619G", "A5677T", "T5688A", "A5734C", "G5739T", "A5751C", "A5788C", "C5789T", "A5790G", "A5794G", "G5805A", "G5830A", "T5834C", "A5840G", "G5842T", "A5848G", "A5849T", "T5860C", "C5887T", "G5917A", "T5929C", "A5947G", "A5983T", "A6019G", "G6029A", "A6030C", "A6031T", "A6037G", "A6044T", "T6100C", "C6101T", "C6148T", "T6160C", "-6165C", "-6169C", "-6170T", "-6172C", "-6174A", "-6177A", "-6178C", "-6179A", "-6180A", "A6186C", "C6193-", "A6197-", "-6221A", "-6222A", "G6224A", "A6261T", "C6278G", "A6283G", "T6287C", "T6290G", "A6292T", "T6307A", "G6311A", "G6403A", "G6442A", "G6457A", "A6461G", "G6466T", "G6490A", "A6532G", "T6582A", "A6584G", "A6589G", "A6599T", "A6635G", "G6638A", "T6655C", "G6716T", "G6742A", "T6745C", "A6757T", "T6763C", "T6766C", "A6781T", "T6787C", "A6796G", "A6799C", "T6849C", "A6857C", "C6859A", "C6888T", "A6889G", "T6898C", "G6905A", "A6913G", "C6925T", "-6956A", "-6957T", "-6958T", "-6962A", "-6963G", "-6964C", "-6967T", "-6968T", "-6969G", "-6970G", "-6971A", "-6974A", "-6975C", "C7006A", "C7008A", "T7009C", "A7027G", "A7040G", "A7055G", "C7084T", "A7096G", "A7100C", "C7114T", "T7144G", "G7147A", "C7156T", "-7162T", "G7190A", "G7197A", "A7238C", "C7266A", "C7313A", "G7322C", "C7324T", "G7343A", "C7463A", "A7471G", "G7477A", "A7540G", "C7597T", "C7625T", "A7626G", "A7705G", "G7712A", "A7713T", "A7714T", "T7715G", "T7774C", "A7852C", "T7877G", "T7921C", "A7938G", "C7949G", "A7953C", "A7964G", "G7977A", "G7997A", "G8019A", "C8044G", "G8050C", "G8055A", "T8167C", "T8171G", "A8173C", "T8197G", "T8209C", "A8228G", "A8264G", "C8311A", "T8390C", "C8406A", "A8408G", "C8412A", "A8432G", "C8445A", "A8446G", "-8487T", "C8507T", "C8514G", "G8522A", "G8555A", "G8590C", "T8594C", "C8661A", "C8688A", "A8701T", "T8711C", "C8741T", "G8807A", "C8812A", "G8814A", "A8837G", "A8846G", "T8847A", "A8851T", "C8867T", "G8868A", "A8869G", "A8874G", "G8905A", "C8906A", "G8909A", "T8914G", "C8978A", "T9073C", "G9128A"], "INT": ["E11D", "S24N", "M50I", "I60V", "D167E"], "RT-p51": ["V60I", "E122K", "D123E", "I142V", "P294T", "D335G", "K357R", "A371V", "E399D"], "RT-p66": ["V60I", "E122K", "D123E", "I142V", "P294T", "D335G", "K357R", "A371V", "E399D", "V467I", "V548I"], "gp120": ["K1N", "E59T", "N64Y", "E78T", "-106Y", "-112T", "-115T", "E136V", "Q142E", "Y145H", "S146A", "K150R", "S162E", "K203E", "E204N", "M243K", "I244V", "I249F", "E262K", "A288S", "D297N", "K307R", "I332T", "N335Q", "T345M", "G351R", "-370S", "-372W", "-374T", "-379N", "-380T", "-381N", "I396V", "R401G", "V414M", "R416Q", "E418V", "D446N", "R448K", "K462Q"], "gp41": ["L4M", "V7L", "A14T", "Q108W", "E137I", "S138A", "S192T", "N212S", "P216V", "D217A", "R221G", "D232N", "S239N", "D247E", "S251N", "L290A", "N298K", "I309V", "G322A"], "nef": ["Q35R", "A49P", "A50F", "G83A", "Q107K", "E108D", "H116N", "Y120F", "T157N", "E158K", "I168M", "C169S", "Q170L", "P176S", "R178G", "L191R"], "p17": ["L31M", "L68I", "T84V", "S111K", "Q113-"], "p24": ["S41T", "E180D", "S200T", "A204G", "P207Q", "T210S"], "p6": ["S3N", "P5L", "E19-", "I21G", "S23T", "-26P", "P36S"], "p7": ["-13I"], "pro": ["V13I", "K20R", "P39S", "I62V", "L63T", "E65D"], "rev": ["K39R", "R50K", "R66G", "A68P", "S107P", "V108G", "I109L", "*117E"], "tat": ["L39I", "N40T", "P59S", "T77A", "V80E", "T82P"], "vif": ["N22H", "V31I", "V66I", "H73Q", "K92R", "I98V", "H110Q", "V129I", "R130I", "P131H", "T157K", "R181K", "G185E"], "vpr": ["Q77N", "V89G"], "vpu": ["F16L", "T24S", "F27L", "I43L", "E48D", "T63A", "-74H", "-75N", "-76P", "D78G", "-79Y", "N81V"]}, "labels": {"aa": "INT: E11D, S24N, M50I, I60V, D167E; RT-p51: V60I, E122K, D123E, I142V, P294T, D335G, K357R, A371V, E399D; RT-p66: V60I, E122K, D123E, I142V, P294T, D335G, K357R, A371V, E399D, V467I, V548I; gp120: K1N, E59T, N64Y, E78T, -106Y, -112T, -115T, E136V, Q142E, Y145H, S146A, K150R, S162E, K203E, E204N, M243K, I244V, I249F, E262K, A288S, D297N, K307R, I332T, N335Q, T345M, G351R, -370S, -372W, -374T, -379N, -380T, -381N, I396V, R401G, V414M, R416Q, E418V, D446N, R448K, K462Q; gp41: L4M, V7L, A14T, Q108W, E137I, S138A, S192T, N212S, P216V, D217A, R221G, D232N, S239N, D247E, S251N, L290A, N298K, I309V, G322A; nef: Q35R, A49P, A50F, G83A, Q107K, E108D, H116N, Y120F, T157N, E158K, I168M, C169S, Q170L, P176S, R178G, L191R; p17: L31M, L68I, T84V, S111K, Q113-; p24: S41T, E180D, S200T, A204G, P207Q, T210S; p6: S3N, P5L, E19-, I21G, S23T, -26P, P36S; p7: -13I; pro: V13I, K20R, P39S, I62V, L63T, E65D; rev: K39R, R50K, R66G, A68P, S107P, V108G, I109L, *117E; tat: L39I, N40T, P59S, T77A, V80E, T82P; vif: N22H, V31I, V66I, H73Q, K92R, I98V, H110Q, V129I, R130I, P131H, T157K, R181K, G185E; vpr: Q77N, V89G; vpu: F16L, T24S, F27L, I43L, E48D, T63A, -74H, -75N, -76P, D78G, -79Y, N81V", "clade": "CRF26_A5U"}}, "children": [{"name": "CRF26_A5U_NODE_0000001", "node_attrs": {"div": 0.11493, "clade_membership": {"value": "CRF26_A5U"}}, "branch_attrs": {"mutations": {"p17": ["K114-", "T115-"]}, "labels": {"aa": "p17: K114-, T115-"}}, "children": [{"name": "FM877781", "node_attrs": {"div": 0.16794, "accession": "FM877781", "clade_membership": {"value": "CRF26_A5U"}, "country": {"value": "CD"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CD_LBTB084"}, "LANL_subtype": {"value": "CRF26_A5U"}}, "branch_attrs": {"mutations": {"nuc": ["C17T", "A21G", "G43A", "C96A", "G121T", "C150T", "A152C", "C153T", "C155T", "T160C", "T163A", "C188T", "T200C", "T227A", "A279G", "A326G", "C362T", "G378T", "A393C", "T396C", "A417C", "A419G", "A461C", "T479C", "G480A", "A520G", "T571A", "G585A", "T586C", "C587T", "C623T", "C626A", "T635A", "A654C", "-668G", "G690A", "A697C", "A715-", "T718-", "C719-", "A720-", "G721-", "T722-", "T731C", "T734C", "G740A", "A752G", "G785A", "G791A", "A914G", "A920G", "A932G", "G956T", "T992A", "G998A", "A1002G", "G1044C", "A1050T", "T1052C", "A1073G", "A1079G", "C1137T", "A1142G", "T1143C", "A1151G", "C1187T", "C1220T", "A1242G", "C1280T", "C1292A", "G1339A", "C1406A", "A1448G", "-1455A", "-1456A", "-1457T", "A1458-", "C1460-", "A1461G", "A1492C", "G1493A", "A1500G", "-1503A", "C1514T", "C1536T", "G1553A", "A1587C", "G1619A", "A1656C", "G1673A", "C1706T", "T1723A", "G1733A", "T1741C", "-1768C", "G1769A", "A1771G", "-1783A", "-1785A", "-1786A", "T1792C", "C1820A", "C1826A", "T1828G", "A1835G", "A1846G", "G1852A", "T1873C", "T1913G", "A2003C", "A2005T", "A2007G", "A2038G", "G2074A", "A2182G", "A2203G", "T2209C", "A2212C", "T2338C", "A2414T", "A2437C", "A2470G", "T2494C", "C2533T", "A2566G", "G2567T", "A2579G", "G2580C", "G2602A", "T2620C", "A2641G", "C2671T", "A2677G", "G2686A", "A2692G", "C2715A", "C2720T", "G2725A", "G2761A", "A2794G", "A2815G", "A2830G", "A2839C", "A2842G", "A2847G", "T2890C", "G2914A", "G2920A", "A2937G", "A2977C", "C3023T", "A3037G", "C3067G", "G3091A", "A3103G", "G3165A", "G3173A", "A3192G", "C3222T", "A3277G", "G3280A", "G3316A", "T3319C", "C3322T", "C3376T", "A3388G", "A3398G", "T3399C", "T3414A", "G3427A", "A3430T", "C3444G", "C3449T", "A3451G", "T3466C", "G3508T", "C3514T", "A3592C", "G3616A", "A3637G", "A3655G", "A3688G", "A3703G", "A3745G", "G3796A", "G3836A", "A3846G", "G3859A", "A3877G", "A3952G", "A4030G", "C4141T", "C4181A", "A4273G", "G4353A", "A4397T", "A4402G", "A4495G", "A4531G", "T4543G", "G4583A", "A4644G", "A4658G", "A4692C", "-4697A", "C4715T", "C4724T", "C4754T", "C4761A", "G4764C", "G4765A", "C4771G", "A4782G", "C4784T", "T4793C", "A4806C", "A4817G", "T4820A", "T4826G", "T4842G", "G4864A", "A4895T", "A4952G", "T4969A", "A4970C", "T4975A", "T4976G", "G4995A", "C5034T", "C5050A", "A5056G", "A5061G", "C5062T", "T5072C", "T5073C", "A5122G", "A5148T", "T5197G", "C5214T", "A5215G", "C5221T", "T5224A", "A5247G", "A5268T", "A5285G", "A5287G", "G5330T", "C5397A", "T5442C", "T5452C", "A5461G", "A5462T", "G5463A", "T5484G", "A5493T", "C5536T", "G5558A", "A5581G", "A5587G", "A5622C", "T5626G", "C5641T", "G5644A", "C5658T", "G5668A", "G5700A", "G5717A", "A5787C", "C5788A", "T5789C", "G5790A", "-5824A", "C5826T", "G5853C", "A5856G", "C5862-", "A5863-", "G5864-", "A5865-", "T5983C", "C6007T", "G6019A", "A6020G", "C6025T", "C6026T", "A6029C", "T6044A", "C6067T", "C6160T", "C6165A", "-6171A", "-6173G", "A6174G", "-6175C", "A6180C", "T6181A", "A6185G", "-6187A", "-6189C", "A6191G", "-6193A", "-6195T", "T6199-", "-6220G", "-6223T", "A6224G", "-6225G", "A6249G", "G6303A", "C6305G", "A6316G", "C6317T", "A6330G", "A6333G", "A6335G", "A6336G", "A6338G", "G6339A", "-6340G", "A6403C", "C6427A", "T6436C", "A6457C", "T6468A", "C6483A", "A6489G", "A6500T", "T6523C", "T6551C", "G6572A", "A6595G", "G6605A", "A6649T", "A6654C", "C6667A", "A6668G", "A6669G", "C6678G", "A6682G", "A6685G", "G6693A", "A6695T", "-6697G", "A6703-", "G6705C", "C6708A", "A6712G", "T6716A", "T6720G", "C6721G", "T6733A", "T6738C", "C6745T", "C6752A", "A6753G", "C6763T", "G6774A", "A6789T", "A6790G", "C6799A", "A6810C", "C6812G", "-6833C", "A6847T", "A6855C", "A6859G", "T6876C", "A6926G", "C6937A", "C6951G", "-6966G", "T6967C", "A6971C", "-6972C", "-6973A", "-6976T", "C6993G", "-6994T", "-6995G", "-6996A", "-6997G", "-6998A", "-6999C", "A7008C", "C7009A", "G7054A", "C7089A", "T7095A", "G7106A", "A7151-", "A7152-", "T7153-", "T7156C", "A7158G", "T7162C", "G7168A", "C7170T", "A7231G", "A7237T", "A7249G", "A7252G", "A7266G", "A7268G", "A7275G", "G7289C", "T7309A", "G7317C", "G7319A", "A7339G", "G7366A", "C7397A", "G7440A", "G7450A", "A7533G", "T7537C", "G7543A", "A7549G", "G7594A", "T7618C", "G7626T", "G7627T", "A7628G", "G7633T", "A7641G", "C7642A", "T7666C", "C7690G", "A7696C", "A7701G", "T7702G", "T7713C", "T7714A", "G7729A", "A7763C", "G7765A", "G7790A", "A7791G", "G7807T", "T7866G", "G7871A", "T7876G", "G7877A", "A7918T", "A7937T", "G7938A", "G7947A", "A7977G", "A7978C", "A8032G", "T8035C", "G8036A", "C8037T", "C8071T", "T8091C", "C8092A", "A8093C", "A8130G", "C8131A", "A8132C", "G8133T", "T8155C", "G8171A", "T8176C", "G8191A", "A8204G", "G8264T", "T8268C", "C8277T", "G8280T", "A8288G", "C8291A", "A8305G", "A8323C", "G8348A", "G8354A", "A8386C", "G8408A", "A8409G", "A8412G", "T8414A", "T8456G", "T8487C", "-8490G", "C8491A", "G8516A", "G8517C", "T8539A", "A8540G", "T8568G", "A8570G", "T8582C", "C8603T", "A8604G", "C8607T", "A8608T", "C8651T", "A8660G", "T8675C", "C8699A", "A8739G", "G8793A", "A8798G", "T8810C", "G8816A", "A8834G", "T8835C", "G8837A", "A8844C", "G8864T", "T8870C", "G8882A", "C8904T", "A8905C", "C8913A", "G8915A", "A8917G", "C8921T", "A8922G", "C8927A", "C8928A", "T9051A", "C9102T", "A9106G", "C9181A"], "INT": ["A21T", "N24S", "Q136K", "G193E", "I208L", "D256E", "D270N"], "RT-p51": ["K39N", "T107S", "A158S", "S162A", "S173A", "A207D", "E248D", "A272P", "K281R", "D324E", "R357K", "A360T", "K366R", "A376V", "V435A", "F440Y"], "RT-p66": ["K39N", "T107S", "A158S", "S162A", "S173A", "A207D", "E248D", "A272P", "K281R", "D324E", "R357K", "A360T", "K366R", "A376V", "V435A", "F440Y", "T450S", "E471D"], "gp120": ["N1S", "T3N", "D4-", "N5-", "I56V", "T59P", "Y64N", "T104N", "-107G", "-109T", "-111A", "N113E", "-114M", "T115N", "-124G", "N132S", "R150K", "L151V", "P155S", "N157D", "D159G", "N160S", "N161G", "E183D", "K201N", "F205Y", "P210Q", "K212R", "T216S", "E240K", "D251N", "N261D", "K265N", "N267T", "N272G", "T275R", "-282R", "-283R", "G284-", "P285-", "G286-", "Q287-", "S288-", "F289-", "Y290-", "A291-", "T292-", "G293-", "D294-", "I295-", "G296-", "N297-", "I298-", "R299-", "Q300-", "R307K", "E309D", "K312M", "K319T", "Q320E", "N334T", "L341P", "N358D", "T366S", "-368P", "T371S", "-373P", "T380S", "N381E", "-382T", "-383N", "-384E", "A412E", "M414E", "V418I", "L424I", "N434S", "T437-", "T439I", "T471S", "K472E", "K474R", "E479Q"], "gp41": ["G5A", "A6T", "Q32K", "R46K", "K77R", "W108F", "E110D", "D113G", "D129E", "N133R", "I137T", "K154Q", "D163S", "F188C", "V190I", "I191M", "S212Y", "G215E", "E225G", "A245I", "F263S", "I264L", "A290I", "I301V", "I321L", "A325V", "C326F", "I329V", "L330I"], "nef": ["E15A", "T23A", "P24I", "D38E", "F50D", "L58V", "E59Q", "L76V", "S88G", "H89F", "I133V", "A151T", "M168L", "E174D", "R188S", "K192R", "I194V"], "p1": ["N9H"], "p17": ["A15S", "K28Q", "E42D", "G49S", "E62G", "F79Y", "V84T", "I107L", "K111R", "K112T", "A119T", "D121A", "S126-", "V128-"], "p2": ["-12V", "I13-"], "p24": ["E75D", "H87Q", "I91V", "A105P", "T107S", "T171A", "D187E", "R203K"], "p6": ["L5I", "F15Y", "-30P", "K31R", "-32E", "S36N", "L38P", "V39S", "N47K", "L50W"], "p7": ["Q9P", "I12V", "K41Q"], "pro": ["L10M", "I13V", "S39A", "K69H", "K70R"], "rev": ["A15T", "K30I", "T62A", "C63H", "H82T", "Q95I", "S103P", "G108D", "E115K"], "tat": ["N7K", "Y26H", "K29V", "P54S", "S61N", "I69V", "K71E", "Q76H", "A77T", "E80K"], "vif": ["T20A", "K36Q", "L59I", "G60Q", "A62G", "I66V", "T74P", "D78E", "H80Q", "S86A", "R93K", "I128N", "I130K", "A137T", "A155E", "K157R", "T159V", "K179R", "T188S"], "vpr": ["Y15F", "P37L", "H40Q", "E48G", "E55V", "I61V"], "vpu": ["T2P", "E5D", "V13I", "V21I", "R37K", "L82F"]}, "labels": {"aa": "INT: A21T, N24S, Q136K, G193E, I208L, D256E, D270N; RT-p51: K39N, T107S, A158S, S162A, S173A, A207D, E248D, A272P, K281R, D324E, R357K, A360T, K366R, A376V, V435A, F440Y; RT-p66: K39N, T107S, A158S, S162A, S173A, A207D, E248D, A272P, K281R, D324E, R357K, A360T, K366R, A376V, V435A, F440Y, T450S, E471D; gp120: N1S, T3N, D4-, N5-, I56V, T59P, Y64N, T104N, -107G, -109T, -111A, N113E, -114M, T115N, -124G, N132S, R150K, L151V, P155S, N157D, D159G, N160S, N161G, E183D, K201N, F205Y, P210Q, K212R, T216S, E240K, D251N, N261D, K265N, N267T, N272G, T275R, -282R, -283R, G284-, P285-, G286-, Q287-, S288-, F289-, Y290-, A291-, T292-, G293-, D294-, I295-, G296-, N297-, I298-, R299-, Q300-, R307K, E309D, K312M, K319T, Q320E, N334T, L341P, N358D, T366S, -368P, T371S, -373P, T380S, N381E, -382T, -383N, -384E, A412E, M414E, V418I, L424I, N434S, T437-, T439I, T471S, K472E, K474R, E479Q; gp41: G5A, A6T, Q32K, R46K, K77R, W108F, E110D, D113G, D129E, N133R, I137T, K154Q, D163S, F188C, V190I, I191M, S212Y, G215E, E225G, A245I, F263S, I264L, A290I, I301V, I321L, A325V, C326F, I329V, L330I; nef: E15A, T23A, P24I, D38E, F50D, L58V, E59Q, L76V, S88G, H89F, I133V, A151T, M168L, E174D, R188S, K192R, I194V; p1: N9H; p17: A15S, K28Q, E42D, G49S, E62G, F79Y, V84T, I107L, K111R, K112T, A119T, D121A, S126-, V128-; p2: -12V, I13-; p24: E75D, H87Q, I91V, A105P, T107S, T171A, D187E, R203K; p6: L5I, F15Y, -30P, K31R, -32E, S36N, L38P, V39S, N47K, L50W; p7: Q9P, I12V, K41Q; pro: L10M, I13V, S39A, K69H, K70R; rev: A15T, K30I, T62A, C63H, H82T, Q95I, S103P, G108D, E115K; tat: N7K, Y26H, K29V, P54S, S61N, I69V, K71E, Q76H, A77T, E80K; vif: T20A, K36Q, L59I, G60Q, A62G, I66V, T74P, D78E, H80Q, S86A, R93K, I128N, I130K, A137T, A155E, K157R, T159V, K179R, T188S; vpr: Y15F, P37L, H40Q, E48G, E55V, I61V; vpu: T2P, E5D, V13I, V21I, R37K, L82F"}}}, {"name": "FM877777", "node_attrs": {"div": 0.15237, "accession": "FM877777", "clade_membership": {"value": "CRF26_A5U"}, "country": {"value": "CD"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97CD_KTB119"}, "LANL_subtype": {"value": "CRF26_A5U"}}, "branch_attrs": {"mutations": {"nuc": ["T12G", "G47A", "A50G", "G52A", "T202G", "C233T", "A305T", "G329A", "C362T", "G428A", "C467T", "C496G", "A497G", "A518G", "A537C", "A554G", "C558A", "A576G", "A592T", "T614G", "A645G", "G667A", "-668G", "-670A", "C679-", "C688T", "A697G", "G706A", "G709A", "-714A", "-716G", "-717G", "G762A", "G791A", "A797G", "G815A", "T861G", "A881T", "A968G", "C974T", "G1085A", "A1142G", "T1143C", "G1192A", "A1205G", "C1235T", "C1330T", "A1382G", "T1421G", "T1444C", "-1459A", "A1475G", "C1490A", "T1501C", "-1503A", "A1526G", "C1556T", "A1562G", "G1568A", "A1656C", "A1692T", "G1718C", "A1720G", "T1729C", "C1767A", "-1768T", "-1783A", "-1785T", "-1786C", "T1791C", "A1889C", "C1903T", "G1912A", "A1926G", "A2018T", "C2129T", "A2140T", "T2146C", "A2203G", "A2212G", "A2273G", "T2278C", "C2299T", "A2311G", "A2419G", "C2485T", "G2519A", "T2542G", "A2548G", "A2557G", "G2567T", "T2608C", "G2612T", "G2683A", "G2725A", "G2755A", "G2833A", "G2878A", "A2896C", "C2909G", "G2914C", "A2975C", "A2984G", "A3025G", "A3028G", "G3029A", "C3055T", "C3067A", "G3097T", "G3099A", "G3127A", "A3216G", "A3241C", "G3264A", "A3293G", "G3316A", "T3319C", "A3481G", "T3505G", "A3556G", "A3578G", "A3604G", "A3607G", "C3610T", "G3631A", "T3644G", "A3684G", "C3692T", "A3733G", "A3768G", "T3865C", "T3874C", "A3925G", "A3952G", "A3955G", "C4006T", "A4060G", "G4063A", "A4219G", "G4228A", "A4376G", "C4381T", "A4403T", "A4423C", "A4433C", "G4489T", "G4631A", "G4673A", "T4674C", "A4677G", "A4693G", "A4694G", "G4695-", "G4696-", "T4702A", "C4724T", "T4769C", "A4802G", "G4805T", "G4855A", "C4871T", "A4888G", "C4890T", "T4891C", "A4900G", "C4902T", "G4982T", "A5065G", "C5091T", "C5168T", "G5330T", "A5355C", "C5358A", "G5382T", "T5391C", "C5406T", "T5415C", "T5466C", "C5478T", "A5480C", "A5491G", "C5495A", "C5530T", "C5537A", "C5538G", "A5547C", "A5548G", "A5555G", "G5556A", "G5565A", "C5585A", "G5599T", "C5611A", "C5625T", "T5653G", "T5654C", "T5659A", "T5677G", "T5686A", "A5689G", "A5703G", "C5751A", "-5812G", "-5861A", "C5862A", "-5866A", "C5869T", "G6002A", "A6008G", "A6023G", "A6024C", "C6030T", "-6171A", "-6173A", "-6175G", "T6181G", "A6185C", "C6186A", "-6187A", "-6189C", "C6190-", "A6191-", "A6192-", "A6194-", "-6200G", "-6201T", "-6202A", "-6203G", "-6204G", "-6205G", "-6206A", "-6207C", "-6208C", "-6209A", "-6210C", "-6211A", "-6212G", "-6213C", "-6214A", "-6215G", "-6216A", "-6217G", "-6218A", "-6219A", "-6220C", "A6222T", "-6223A", "-6225C", "A6229C", "C6241T", "G6267A", "G6280A", "A6335G", "-6340T", "A6349G", "A6403T", "C6412T", "T6454C", "G6463A", "T6466C", "A6476T", "A6478G", "G6480A", "C6483T", "A6488C", "A6525G", "A6553G", "G6569A", "A6576G", "G6583A", "A6595G", "A6636C", "A6638C", "A6648G", "T6652C", "A6682G", "A6734G", "T6735A", "G6743A", "A6751G", "C6769T", "T6781G", "A6800C", "G6803A", "A6820G", "-6833T", "A6844G", "C6849T", "A6858C", "T6932A", "G6935A", "G6936A", "C6937A", "A6956C", "-6966C", "-6972A", "-6973T", "-6976G", "-6977A", "-6978C", "-6979C", "-6980C", "-6981A", "-6982G", "-6983G", "-6984C", "-6985A", "C6991T", "G7094A", "A7124C", "A7126G", "A7148G", "T7150C", "A7155G", "A7158G", "C7164A", "A7177G", "T7204C", "G7225A", "A7255G", "G7315A", "C7322A", "T7324G", "A7396G", "A7463C", "C7486T", "G7495A", "G7513T", "G7524A", "A7525G", "A7531G", "A7590C", "A7629G", "C7678T", "A7687T", "C7690G", "A7700G", "G7717A", "G7720A", "A7722T", "A7741G", "G7807A", "A7818G", "A7820G", "T7821C", "A7832G", "A7834G", "G7862A", "A7885G", "G7949C", "C7953A", "G7962A", "G7985A", "A8023G", "G8036T", "C8037T", "T8159A", "G8160A", "T8172C", "T8203C", "A8219G", "A8271G", "T8281G", "A8282G", "G8283C", "A8288T", "C8291A", "C8293T", "A8305G", "C8351A", "T8387G", "A8400T", "G8402A", "A8406C", "G8446A", "T8456G", "A8465G", "-8490T", "C8491T", "T8492C", "T8495C", "A8564G", "C8594G", "T8640C", "T8700A", "A8718T", "A8719G", "T8720C", "A8739G", "T8786A", "C8794A", "A8858G", "G8864T", "T8870C", "T8887A", "G8888A", "A8892C", "C8904A", "A8906G", "A8909G", "G8914T", "A8922T", "A8924G", "T8935A", "G8936A", "T8939C", "C8966A", "A8967G", "A8970C", "G8971T", "A8980G", "C8989T", "T8993C", "G8994A", "T9019G", "T9097G", "A9128G", "G9132A", "A9135G", "G9137A"], "INT": ["I50M", "I201V", "T210S", "Q216H", "I220L", "D286N"], "RT-p51": ["I60V", "V142I", "A158S", "S251N", "T294P", "K297E", "D312N", "D324E", "Q334H", "G335E", "K374R", "R390K", "T400A", "V435I"], "RT-p66": ["I60V", "V142I", "A158S", "S251N", "T294P", "K297E", "D312N", "D324E", "Q334H", "G335E", "K374R", "R390K", "T400A", "V435I", "I495V", "L517V", "K530R", "K558R"], "gp120": ["T3K", "D4E", "D50N", "N52D", "N57A", "T59I", "-107K", "-109K", "-111Q", "N113V", "-114G", "-116T", "-117A", "-118E", "-119N", "-120I", "-121T", "-122D", "E125-", "R138K", "N157D", "N161D", "E162S", "E183D", "T208S", "G209E", "P210L", "K212Q", "K224R", "E239K", "E241G", "N261A", "K262Q", "K265R", "H280R", "D294E", "Q315H", "K316Q", "V317I", "P326S", "T332I", "Q335P", "S360T", "G361K", "-368L", "-373N", "-375T", "-376Q", "-377A", "-382E", "-383N", "T385-", "N432D", "N434S", "N435S", "T436N", "T437N", "T471N"], "gp41": ["M4I", "L7M", "M54L", "R74K", "N96T", "D109S", "D129E", "N133D", "N140I", "K172R", "I173A", "I177V", "V187I", "T192A", "V216L", "A217D", "G220E", "E228K", "A245F", "W286K", "T306A", "I321V", "A322V", "Q323R", "C326W", "R327A", "I329F", "L330I", "F340L"], "nef": ["M20L", "P24T", "R35K", "D38E", "P49S", "L58V", "F120I", "N126C", "I133V", "A151D", "E174D", "M182K", "K184Q", "R188K", "R191L", "I194L", "L198Q"], "p1": ["N9H"], "p17": ["M31I", "A54G", "I61M", "I68L", "L75I", "T81A", "Y86F", "D93E", "I104V", "A118V", "D121G", "S124N", "S125N", "-127T"], "p2": ["V7A"], "p24": ["V11I", "S44A", "Q50H", "M118I", "R154K", "T200I"], "p6": ["E13D", "N14S", "M17T", "T22I", "-30M", "-32E"], "p7": ["I12T"], "pro": ["T31P", "K43R", "T74S"], "rev": ["P8S", "E11A", "R14E", "R17K", "Q24K", "S34T", "R46K", "I59V", "C63F", "V104E"], "tat": ["E2D", "Q35P", "I39V", "T40N", "R52W", "P54Q", "T58A", "Q60R", "P70Q", "E80D", "P82T", "E85K"], "vif": ["M29I", "Y30H", "I31V", "K36R", "G37-", "F39Y", "Q73H", "R90K", "D101G", "L102S", "Q105R", "R132S", "K160R"], "vpr": ["I84L", "A93S", "S96P"], "vpu": ["A7S", "L16A", "L18I", "S24A", "L27I", "I28V", "D48E", "N69D"]}, "labels": {"aa": "INT: I50M, I201V, T210S, Q216H, I220L, D286N; RT-p51: I60V, V142I, A158S, S251N, T294P, K297E, D312N, D324E, Q334H, G335E, K374R, R390K, T400A, V435I; RT-p66: I60V, V142I, A158S, S251N, T294P, K297E, D312N, D324E, Q334H, G335E, K374R, R390K, T400A, V435I, I495V, L517V, K530R, K558R; gp120: T3K, D4E, D50N, N52D, N57A, T59I, -107K, -109K, -111Q, N113V, -114G, -116T, -117A, -118E, -119N, -120I, -121T, -122D, E125-, R138K, N157D, N161D, E162S, E183D, T208S, G209E, P210L, K212Q, K224R, E239K, E241G, N261A, K262Q, K265R, H280R, D294E, Q315H, K316Q, V317I, P326S, T332I, Q335P, S360T, G361K, -368L, -373N, -375T, -376Q, -377A, -382E, -383N, T385-, N432D, N434S, N435S, T436N, T437N, T471N; gp41: M4I, L7M, M54L, R74K, N96T, D109S, D129E, N133D, N140I, K172R, I173A, I177V, V187I, T192A, V216L, A217D, G220E, E228K, A245F, W286K, T306A, I321V, A322V, Q323R, C326W, R327A, I329F, L330I, F340L; nef: M20L, P24T, R35K, D38E, P49S, L58V, F120I, N126C, I133V, A151D, E174D, M182K, K184Q, R188K, R191L, I194L, L198Q; p1: N9H; p17: M31I, A54G, I61M, I68L, L75I, T81A, Y86F, D93E, I104V, A118V, D121G, S124N, S125N, -127T; p2: V7A; p24: V11I, S44A, Q50H, M118I, R154K, T200I; p6: E13D, N14S, M17T, T22I, -30M, -32E; p7: I12T; pro: T31P, K43R, T74S; rev: P8S, E11A, R14E, R17K, Q24K, S34T, R46K, I59V, C63F, V104E; tat: E2D, Q35P, I39V, T40N, R52W, P54Q, T58A, Q60R, P70Q, E80D, P82T, E85K; vif: M29I, Y30H, I31V, K36R, G37-, F39Y, Q73H, R90K, D101G, L102S, Q105R, R132S, K160R; vpr: I84L, A93S, S96P; vpu: A7S, L16A, L18I, S24A, L27I, I28V, D48E, N69D"}}}]}, {"name": "CRF26_A5U_NODE_0000002", "node_attrs": {"div": 0.12207, "clade_membership": {"value": "CRF26_A5U"}}, "branch_attrs": {"mutations": {"nuc": ["A101G", "G612A", "A666-", "G667-", "A669-", "-675A", "-676A", "-716G", "-717G", "C978T", "C1005G", "A1467G", "G1486A", "T1559C", "A2764G", "C2845A", "G3043A", "A3400G", "G3685A", "C3712T", "G4276A", "C4428T", "-4697G", "G4859A", "T5006G", "G5257A", "T5293A", "G5437C", "A5481G", "G5784A", "-5866C", "C6178T", "C6184A", "-6195A", "-6206A", "-6208A", "G6323A", "A6464G", "A6573G", "A6647G", "C6797A", "T6957A", "T6958A", "A6962G", "-6978A", "G7056A", "A7085G", "T7801A", "G7846A", "C7932T", "A7998C", "G8079A", "T8279G", "G8514T", "A8762G", "T8883C", "T8947A"], "INT": ["T218I"], "RT-p51": ["D250E", "V435M"], "RT-p66": ["D250E", "V435M"], "gp120": ["N5K", "E240G", "Q315S", "-368K", "S370G", "G401E", "I411V"], "gp41": ["D109N", "N166K", "N232T", "C326G"], "nef": ["F202Y"], "p17": ["I61L", "D93N", "K111-", "K112-"], "p2": ["N11A"], "p24": ["P92A"], "p6": ["K31-", "R33K", "Q35R", "S36E"], "p7": ["M1V", "R7K"], "rev": ["K50N"], "tat": ["A21P", "P75S"], "vif": ["N140K"]}, "labels": {"aa": "INT: T218I; RT-p51: D250E, V435M; RT-p66: D250E, V435M; gp120: N5K, E240G, Q315S, -368K, S370G, G401E, I411V; gp41: D109N, N166K, N232T, C326G; nef: F202Y; p17: I61L, D93N, K111-, K112-; p2: N11A; p24: P92A; p6: K31-, R33K, Q35R, S36E; p7: M1V, R7K; rev: K50N; tat: A21P, P75S; vif: N140K"}}, "children": [{"name": "FM877782", "node_attrs": {"div": 0.16794, "accession": "FM877782", "clade_membership": {"value": "CRF26_A5U"}, "country": {"value": "CD"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CD_MBTB047"}, "LANL_subtype": {"value": "CRF26_A5U"}}, "branch_attrs": {"mutations": {"nuc": ["G43A", "T200C", "T227A", "T228-", "A305T", "G354A", "G365A", "A369C", "G378A", "C379G", "T396C", "G401A", "G425A", "A426C", "G428A", "G463A", "C467T", "G468T", "C471A", "A516C", "A530G", "A537G", "A549T", "A645G", "A656G", "-677A", "-678G", "C694A", "G696A", "-714A", "G755A", "C767T", "A774C", "A806G", "A810G", "C827T", "A852G", "C853T", "A854G", "A860G", "C897A", "T936A", "G956A", "G977A", "T992G", "G1019A", "G1078C", "G1127A", "T1271A", "A1278G", "A1279C", "C1295T", "T1296C", "A1412G", "A1418G", "A1445G", "A1452G", "-1459A", "A1464T", "A1473G", "A1495G", "G1498A", "A1502T", "-1503A", "G1552A", "A1565G", "A1588G", "C1610T", "A1642G", "A1644T", "T1653C", "C1676T", "A1687G", "A1692T", "A1696T", "C1706T", "T1724G", "G1727A", "A1728-", "T1729-", "G1730-", "G1731A", "G1732T", "G1738A", "A1740G", "T1741G", "A1742G", "C1745A", "-1746A", "-1747C", "-1748C", "G1760A", "G1764-", "A1765-", "G1766-", "C1767-", "G1769-", "A1776G", "G1778A", "-1783A", "-1785T", "-1786C", "T1791C", "G1794A", "T1828C", "G1852A", "G1861A", "C1903T", "A1963G", "G1972A", 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"N261D", "P263A", "K265V", "T269S", "I281L", "N297D", "H302A", "T308K", "E309D", "N311D", "T313A", "R322S", "K323D", "T330S", "T332A", "S365R", "N369D", "T371N", "-373T", "-375Q", "-376E", "-377N", "N378G", "N379T", "T380N", "N381E", "-382N", "T385-", "N397R", "V418I", "N432K", "N433D", "N434K", "T436D", "T439I", "V468L", "K474R"], "gp41": ["T14A", "L91I", "S101T", "S125N", "D129N", "I137V", "K154E", "D163S", "V187A", "F188L", "V193I", "P209L", "T210F", "G230D", "F255C", "R259H", "I264L", "V271L", "L273I", "L277R", "K298N", "S302N", "D305N", "T307I", "W314C", "A325G", "F340L", "L345Q"], "nef": ["I10V", "E28T", "I43V", "P49S", "S88G", "H89F", "K105Q", "P167A", "R188Q", "I194T"], "p1": ["K4R", "I5F", "S8P"], "p17": ["V7I", "K12Q", "A15R", "M31L", "R43K", "A45S", "L46I", "I68V", "T72S", "I104V", "I107M", "T115A", "A120D", "D121N", "-127K"], "p2": ["T10-", "-12N", "M14L"], "p24": ["I15L", "I27V", "T41V", "L56M", "L69I", "H87Q", "M96I", "G116A", "D180E", "N183A"], "p6": ["N3S", "E6V", "F15L", "G18E", "E29-", "R35G", "V39I", "L50S"], "p7": ["R3G", "K10R", "R11K", "R29K", "K41R"], "rev": ["E11A", "R14G", "Y28L", "Q51K", "H82S", "C89F", "T91N", "S112A", "E117*"], "tat": ["P6R", "L8I", "E9D", "K29Q", "V36L", "Q60R", "K63Q", "I69L", "L74S"], "vif": ["H27Y", "I31R", "F39L", "I65V", "K77R", "D78E", "Q91L", "D101G", "D113E", "E117D", "L125V", "R132K", "P156T", "R167K", "C192H"], "vpr": ["M19T", "H28Q", "E55G", "N77S", "I84F", "R86S", "D91N", "S96P"], "vpu": ["E5Q", "A7Y", "V13I", "I28V", "R31K", "N69D"]}, "labels": {"aa": "INT: V37I, I84M, K111R, I113V, T125A, K211R; RT-p51: I5V, L34I, K39N, I50V, S173A, T200A, Q245K, S251N, R358K, T369A, A376T, T377M, E432D; RT-p66: I5V, L34I, K39N, I50V, S173A, T200A, Q245K, S251N, R358K, T369A, A376T, T377M, E432D, R461K, I466V, I467V, S468T, S491L, L517I; gp120: T3A, I56M, T78A, N105D, Y106I, -107T, N108-, T110-, -114R, -116S, -117R, -118N, -119H, -120T, -121D, -122I, -123N, -124R, I126M, K127R, K141Q, P155L, I156M, D159S, N160S, N161G, K201R, E203K, N204D, P210L, K212T, E241G, D251N, L260F, N261D, P263A, K265V, T269S, I281L, N297D, H302A, T308K, E309D, N311D, T313A, R322S, K323D, T330S, T332A, S365R, N369D, T371N, -373T, -375Q, -376E, -377N, N378G, N379T, T380N, N381E, -382N, T385-, N397R, V418I, N432K, N433D, N434K, T436D, T439I, V468L, K474R; gp41: T14A, L91I, S101T, S125N, D129N, I137V, K154E, D163S, V187A, F188L, V193I, P209L, T210F, G230D, F255C, R259H, I264L, V271L, L273I, L277R, K298N, S302N, D305N, T307I, W314C, A325G, F340L, L345Q; nef: I10V, E28T, I43V, P49S, S88G, H89F, K105Q, P167A, R188Q, I194T; p1: K4R, I5F, S8P; p17: V7I, K12Q, A15R, M31L, R43K, A45S, L46I, I68V, T72S, I104V, I107M, T115A, A120D, D121N, -127K; p2: T10-, -12N, M14L; p24: I15L, I27V, T41V, L56M, L69I, H87Q, M96I, G116A, D180E, N183A; p6: N3S, E6V, F15L, G18E, E29-, R35G, V39I, L50S; p7: R3G, K10R, R11K, R29K, K41R; rev: E11A, R14G, Y28L, Q51K, H82S, C89F, T91N, S112A, E117*; tat: P6R, L8I, E9D, K29Q, V36L, Q60R, K63Q, I69L, L74S; vif: H27Y, I31R, F39L, I65V, K77R, D78E, Q91L, D101G, D113E, E117D, L125V, R132K, P156T, R167K, C192H; vpr: M19T, H28Q, E55G, N77S, I84F, R86S, D91N, S96P; vpu: E5Q, A7Y, V13I, I28V, R31K, N69D"}}}, {"name": "FM877780", "node_attrs": {"div": 0.16444999999999999, "accession": "FM877780", "clade_membership": {"value": "CRF26_A5U"}, "country": {"value": "CD"}, "date": {"value": 2002.0}, "Strain_name": {"value": "02CD_KS069"}, "LANL_subtype": {"value": "CRF26_A5U"}}, "branch_attrs": {"mutations": {"nuc": ["T120A", "G121T", "C151T", "C155G", "T156A", "G164A", "-167A", "C175T", "G178C", "T182G", "G190A", "A192C", "A198C", "G325A", "G331A", "G394A", "A399C", "G424A", "C456T", "T479A", "G481A", "G495T", "A508T", "A516T", "A520C", "T525A", "T536A", "T571A", "A576G", "A592G", "A599G", "G607A", "G608A", "A642G", "G651A", "-677G", "-678A", "G706A", "G709A", "G712A", "-714C", "A724G", "A725G", "A764G", "G771T", "T782C", "G809A", "C824A", "A866G", "G956C", "C1040T", "T1052A", "G1090A", "C1094T", 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"-6217G", "-6218A", "-6219C", "-6220G", "-6223A", "A6224-", "A6226-", "G6227-", "A6228-", "A6229-", "A6230-", "C6238T", "T6242A", "G6280A", "A6311G", "T6322C", "A6326G", "A6327G", "A6338G", "-6340G", "T6395A", "T6466A", "C6496T", "C6499T", "A6500T", "T6556C", "G6569A", "A6574T", "G6584A", "T6599C", "C6612T", "G6635A", "A6638G", "C6641T", "A6648C", "A6649G", "C6666T", "A6668G", "A6669G", "T6676C", "A6684G", "A6691C", "T6722C", "G6743A", "A6751G", "A6775C", "A6776C", "C6777T", "A6780C", "A6789G", "T6794C", "A6798C", "A6800C", "A6801T", "A6818G", "G6819A", "-6830C", "-6831G", "C6834-", "A6841G", "C6875T", "G6906A", "C6964A", "A6965G", "-6966T", "-6972G", "-6973G", "C6975T", "-6976G", "-6977A", "-6979C", "-6980C", "-6981A", "-6982G", "-6983A", "-6984C", "-6985A", "A6989G", "-6994G", "A7000-", "G7048A", "T7084A", "C7087T", "T7095A", "T7109A", "T7114C", "A7149T", "A7157G", "T7159G", "A7161C", "A7216G", "T7222C", "G7225A", "C7238A", "A7241C", "A7265G", "A7313C", "A7463G", "A7477C", "C7498T", "G7513A", "A7522G", "A7553C", "A7590C", "C7603T", "T7622A", "G7633C", "C7690T", "T7757C", "G7759A", "G7760A", "G7765A", "C7770A", "A7771C", "G7779T", "T7789C", "C7792T", "A7800G", "G7807T", "T7844C", "C7852A", "T7864C", "A7873G", "A7874G", "A7886G", "A7887G", "A7903T", "G8017C", "C8080A", "A8204G", "T8218C", "G8228A", "C8232T", "A8241G", "T8243G", "G8255A", "T8265G", "G8267A", "G8274T", "A8323T", "G8348T", "G8385A", "A8386C", "A8409G", "C8413G", "T8414G", "T8440C", "G8441A", "A8465G", "A8469C", "C8477T", "T8487C", "-8490A", "T8495C", "G8537A", "A8564G", "T8568C", "T8569A", "T8585C", "T8595G", "T8636A", "T8685C", "C8699A", "T8740C", "C8809A", "T8810G", "G8818A", "A8858G", "T8867C", "A8905T", "A8906C", "C8913T", "G8914A", "G8915T", "C8934A", "A8954G", "G8955A", "C8966T", "T9115C"], "INT": ["N24H", "I31V", "V32I", "D41N", "V112I", "F121L", "N134D", "I201V", "I203M"], "RT-p51": ["K20R", "E40D", "D121H", "E123D", "T165I", "G196E", "K211R", "Q245E", "S251I", "A272P", "T296S", "K356R", "A376V", "T403M", "F440Y"], "RT-p66": ["K20R", "E40D", "D121H", "E123D", "T165I", "G196E", "K211R", "Q245E", "S251I", "A272P", "T296S", "K356R", "A376V", "T403M", "F440Y", "Y483H", "S491A", "I548V", "S554N"], "gp120": ["Y33H", "T35P", "D50N", "N52D", "N57D", "T59H", "N102R", "-107N", "-109T", "T110A", "-111Y", "T112N", "-114T", "T115G", "E125-", "I126-", "K127-", "S130T", "I153V", "N158G", "E162G", "S181T", "N204E", "T216S", "E239K", "V244I", "F249L", "A253V", "K262E", "P263S", "K265A", "P271L", "N272G", "K277R", "H280R", "Y290H", "D294A", "R307S", "T308L", "E309A", "K312R", "S315T", "K316L", "R322E", "P326R", "R351K", "T371V", "-373E", "T374R", "-375G", "-376R", "-377M", "N379Q", "-384D", "M398I", "M414E", "S419T", "L424I", "N432I", "N435E", "Q462K", "I463L", "T471D"], "gp41": ["M4L", "M54V", "I84L", "N96T", "S107T", "E110D", "D153N", "A156D", "W159L", "K166R", "I191V", "T192A", "N195G", "T210I", "R259Q", "A290V", "I301V", "V309I", "A310V", "E313G", "W314G", "V318I", "I321G", "A322I", "R324I"], "nef": ["E15T", "T23A", "P24R", "V33A", "I43L", "F50T", "L76Q", "F85V", "D98E", "Y115H", "I133T", "A156E", "G159E", "R188L", "R191Y", "L198M"], "p17": ["R20K", "R30K", "G49D", "A54S", "Q58L", "E62A", "L64I", "F79Y", "T81A", "Y86C", "R91K", "K103E", "E106K", "S124N", "S125N", "S126N", "-127Q", "Q130R"], "p2": ["N9S", "T10Q", "-12T"], "p24": ["A14S", "E75D", "S120N", "R154K", "A177C"], "p6": ["L5I", "T22I", "-30L"], "p7": ["I13-"], "pro": ["S39P"], "rev": ["I16V", "E57Q", "L78I"], "tat": ["N7S", "K29R", "V36C", "N62S", "I69V"], "vif": ["K33R", "R41K", "L59I", "G60N", "D61E", "I87V", "I128K", "A137T", "R158G", "T159A"], "vpr": ["E24D", "H45Y", "E55A", "Q66H", "I84T", "R85L", "R86Q"], "vpu": ["T2L", "P3S", "E5K", "L16I", "L27I", "R37K", "L64I", "-70F", "-71N", "H74-", "N75-", "L82F"]}, "labels": {"aa": "INT: N24H, I31V, V32I, D41N, V112I, F121L, N134D, I201V, I203M; RT-p51: K20R, E40D, D121H, E123D, T165I, G196E, K211R, Q245E, S251I, A272P, T296S, K356R, A376V, T403M, F440Y; RT-p66: K20R, E40D, D121H, E123D, T165I, G196E, K211R, Q245E, S251I, A272P, T296S, K356R, A376V, T403M, F440Y, Y483H, S491A, I548V, S554N; gp120: Y33H, T35P, D50N, N52D, N57D, T59H, N102R, -107N, -109T, T110A, -111Y, T112N, -114T, T115G, E125-, I126-, K127-, S130T, I153V, N158G, E162G, S181T, N204E, T216S, E239K, V244I, F249L, A253V, K262E, P263S, K265A, P271L, N272G, K277R, H280R, Y290H, D294A, R307S, T308L, E309A, K312R, S315T, K316L, R322E, P326R, R351K, T371V, -373E, T374R, -375G, -376R, -377M, N379Q, -384D, M398I, M414E, S419T, L424I, N432I, N435E, Q462K, I463L, T471D; gp41: M4L, M54V, I84L, N96T, S107T, E110D, D153N, A156D, W159L, K166R, I191V, T192A, N195G, T210I, R259Q, A290V, I301V, V309I, A310V, E313G, W314G, V318I, I321G, A322I, R324I; nef: E15T, T23A, P24R, V33A, I43L, F50T, L76Q, F85V, D98E, Y115H, I133T, A156E, G159E, R188L, R191Y, L198M; p17: R20K, R30K, G49D, A54S, Q58L, E62A, L64I, F79Y, T81A, Y86C, R91K, K103E, E106K, S124N, S125N, S126N, -127Q, Q130R; p2: N9S, T10Q, -12T; p24: A14S, E75D, S120N, R154K, A177C; p6: L5I, T22I, -30L; p7: I13-; pro: S39P; rev: I16V, E57Q, L78I; tat: N7S, K29R, V36C, N62S, I69V; vif: K33R, R41K, L59I, G60N, D61E, I87V, I128K, A137T, R158G, T159A; vpr: E24D, H45Y, E55A, Q66H, I84T, R85L, R86Q; vpu: T2L, P3S, E5K, L16I, L27I, R37K, L64I, -70F, -71N, H74-, N75-, L82F"}}}]}]}, {"name": "NODE_0000891", "node_attrs": {"div": 0.10404, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["A14G", "C23A", "G52A", "A166-", "T172-", "T174-", "C175-", "T176-", "C179-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A265G", "G495T", "C507A", "A520G", "T614G", "T636C", "A654G", "T655A", "A666C", "G667A", "A674G", "A715-", "T718-", "T734C", "G803C", "A810G", "T884C", "T1316C", "G1328A", "T1334C", "A1337G", "G1404A", "-1455A", "-1456A", "-1457T", "-1459A", "C1490T", "G1493A", "A1526G", "T1574C", "C1598T", "G1661A", "G1727A", "T1754G", "G1769-", "A1770-", "A1771-", "A1772-", "G1773-", "A1774-", "G1784-", "-1786A", "T1791G", "T1792C", "G1794A", "A1894G", "T1910C", "G1972A", "A1985G", "A2007G", "T2011C", "A2069G", "C2070T", "A2075C", "G2215A", "A2275G", "A2341G", "A2368G", "T2392A", "T2434C", "A2446C", "G2456C", "T2467C", "G2473A", "T2499C", "G2518A", "G2539A", "G2707A", "G2710A", "G2755A", "C2797T", "C2828A", "G2878A", "A2884G", "C2885T", "C2909G", "C2944T", "G2947A", "G2986A", "C3006A", "T3049C", "G3127A", "G3173A", "G3211A", "G3218A", "G3220A", "C3225T", "A3226G", "C3266T", "A3292G", "T3399C", "G3439A", "A3502G", "C3545T", "A3547G", "G3553A", "C3567T", "A3574G", "T3577C", "C3589T", "C3628T", "A3684G", "A3736G", "T3742C", "A3755T", "C3773T", "A3845C", "T3850C", "C3889T", "T4039C", "C4079T", "T4085C", "C4129G", "A4130C", "G4131C", "C4144T", "T4147A", "A4175G", "A4176G", "A4178G", "A4195G", "T4321C", "G4354A", "C4396T", "A4419G", "C4471T", "A4498C", "T4703C", "G4727A", "A4735G", "A4760G", "T4769G", "T4805C", "A4806C", "A4865G", "C4871T", "C4889T", "A4901T", "T4907C", "C4965G", "C5034T", "A5051T", "C5052T", "T5263C", "G5363-", "C5372A", "G5385A", "T5484G", "A5548C", "T5602G", "C5611T", "C5612T", "C5625A", "C5627T", "T5628G", "A5643G", "G5644A", "G5673A", "G5699A", "A5706T", "C5707A", "T5708A", "A5709G", "A5728T", "G5737A", "A5748T", "-5824A", "C5826T", "A5828T", "C5833T", "A5843C", "T5857G", "C5869T", "C5884A", "G5893A", "T5980C", "A6020G", "A6086G", "C6087A", "G6133A", "-6165G", "A6176-", "T6181-", "C6193T", "-6195G", "-6196C", "T6246A", "G6267A", "A6286C", "T6295G", "G6303A", "C6318A", "A6338C", "G6339-", "C6369T", "T6373C", "G6379A", "C6412T", "G6466A", "C6496T", "A6500T", "C6511T", "A6525G", "T6534C", "A6553G", "A6573G", "C6601T", "C6632T", "A6636C", "A6647C", "T6694C", "A6695T", "-6697T", "A6703-", "A6718C", "G6725A", "C6729A", "A6730T", "G6732A", "T6772C", "G6774A", "A6788G", "A6790C", "A6809G", "-6833C", "T6952G", "-6966C", "-6980A", "-6982G", "A6989G", "-6994G", "-6995G", "-6999C", "A7065G", "C7087T", "G7106A", "T7107C", "A7151-", "A7152G", "T7153-", "T7165C", "A7275G", "A7339G", "G7440A", "A7532C", "A7549G", "A7621G", "T7622A", "A7628G", "T7699C", "A7701G", "T7702G", "G7759A", "G7765A", "G7773A", "C7775T", "G7790A", "T7796A", "T7801C", "T7865A", "G7871A", "C7926T", "A7948T", "C8089T", "T8091G", "G8212A", "C8213T", "T8281C", "C8294A", "A8323C", "G8335A", "A8386C", "A8396G", "A8455C", "A8458C", "A8461G", "A8469G", "-8487G", "-8490G", "G8528A", "T8582C", "T8585C", "T8687C", "G8793T", "A8798G", "C8832T", "G8861A", "G8868C", "A8869C", "T8887A", "C8900T", "A8917G", "T8923G", "G8991A", "T8993-", "A9005G", "T9018G", "T9019A", "G9030T", "A9099G", "C9108A"], "INT": ["S24H", "S119P", "N134G", "I135V", "K215R"], "RT-p51": ["D121H", "I135T", "Q245K", "A304E", "A360T", "V375I", "T377M", "V435A"], "RT-p66": ["D121H", "I135T", "Q245K", "A304E", "A360T", "V375I", "T377M", "V435A", "K530R"], "gp120": ["I56V", "T104S", "-106A", "N113-", "F131Y", "R138K", "I153V", "P155Q", "N160T", "A172V", "T216S", "K224R", "V227A", "E240G", "L260F", "N261T", "K265Q", "H280R", "I281F", "A291T", "T292N", "G293D", "D294I", "K312D", "K319E", "-384D", "Q404R", "R416K", "E418T", "L424M", "N433-", "T436S", "K474R"], "gp41": ["R46K", "M54L", "K77Q", "S107T", "N133R", "S157N", "S165T", "F188I", "V190I", "T208I", "E225G", "F263C", "L304F", "H331N"], "nef": ["E15A", "D38A", "K39T", "H40R", "I43V", "A151S", "M173I", "M182K", "K192R", "I194R"], "p17": ["A54S", "Q58K", "E62G", "D93E", "I107E", "S111H", "V128-"], "p24": ["I27V", "G225S"], "p6": ["P5T", "K31R", "P36-", "L38A", "V39I"], "pro": ["L63V", "K70R", "T91V", "I93L"], "rev": ["E11D"], "tat": ["T58P", "P73S"], "vif": ["K50R", "D61E", "T74P", "Q105H", "Q127E", "P156T"], "vpr": ["H28Q", "G94S"], "vpu": ["T2L", "V13I", "R31K", "L34K", "R41W", "D44K", "R47S", "-70L", "-71D", "-72F"]}, "labels": {"aa": "INT: S24H, S119P, N134G, I135V, K215R; RT-p51: D121H, I135T, Q245K, A304E, A360T, V375I, T377M, V435A; RT-p66: D121H, I135T, Q245K, A304E, A360T, V375I, T377M, V435A, K530R; gp120: I56V, T104S, -106A, N113-, F131Y, R138K, I153V, P155Q, N160T, A172V, T216S, K224R, V227A, E240G, L260F, N261T, K265Q, H280R, I281F, A291T, T292N, G293D, D294I, K312D, K319E, -384D, Q404R, R416K, E418T, L424M, N433-, T436S, K474R; gp41: R46K, M54L, K77Q, S107T, N133R, S157N, S165T, F188I, V190I, T208I, E225G, F263C, L304F, H331N; nef: E15A, D38A, K39T, H40R, I43V, A151S, M173I, M182K, K192R, I194R; p17: A54S, Q58K, E62G, D93E, I107E, S111H, V128-; p24: I27V, G225S; p6: P5T, K31R, P36-, L38A, V39I; pro: L63V, K70R, T91V, I93L; rev: E11D; tat: T58P, P73S; vif: K50R, D61E, T74P, Q105H, Q127E, P156T; vpr: H28Q, G94S; vpu: T2L, V13I, R31K, L34K, R41W, D44K, R47S, -70L, -71D, -72F"}}, "children": [{"name": "results/subtype_trees/CRF16_A2D.nwk", "node_attrs": {"div": 0.11786999999999999, "clade_membership": {"value": "CRF16_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "A399C", "G407A", "G428A", "G458A", "A462C", "C467T", "C476T", "A491G", "A503C", "T525C", "C537A", "C539T", "T560C", "C767T", "A1359T", "T1749C", "A1857G", "G2001A", "C2446T", "G2578A", "C2613A", "C2638T", "C2653T", "C2715A", "T2716A", "C2749T", "A2842G", "A2938G", "C3376T", "G3679A", "G3694A", "A3866G", "C4534T", "G4726T", "A4895G", "T5052G", "G5060A", "T5073C", "A5090G", "G5099A", "G5128A", "T5160C", "G5161A", "A5167G", "G5170C", "C5186A", "A5187G", "C5242T", "C5251T", "A5268C", "T5294C", "C5303T", "G5312A", "C5333T", "A5361-", "G5362-", "T5371C", "G5375A", "G5376A", "G5382T", "G5418A", "A5421C", "A5480C", "T5626G", "A5655C", "A5665G", "T5781G", "G5800A", "A5848G", "T5852A", "-5866C", "T5870C", "G5907A", "A6023G", "A6182-", "A6186-", "-6212A", "-6214A", "-6219A", "-6222A", "T6289G", "G6323A", "-6340G", "T6385C", "A6462C", "G6463A", "A6532G", "T6551C", "A6689G", "A6855C", "-6981G", "G7094A", "A7154G", "A7161-", "A7470G", "A7589T", "A7590T", "C7762T", "T7867G", "A8032G", "C8103T", "A8173G", "A8219G", "T8243G", "G8254A", "T8321C", "G8329A", "A8457G", "G8537A", "A8701T", "G8738A", "G8905A", "G8977A", "C8979A"], "INT": ["I31V"], "RT-p51": ["S173K", "A207E"], "RT-p66": ["S173K", "A207E", "S491L"], "gp120": ["R18K", "N57D", "-107S", "K203T", "I279V", "N334T", "-370D"], "gp41": ["K56R", "I188M", "A267V", "T306A", "W314G", "F340L"], "nef": ["T39A", "R188H"], "p17": ["L68I", "T72S"], "p24": ["E180D", "T210S"], "p6": ["S23-", "R33-", "E34-", "Q35-"], "pro": ["K20R", "G68E"], "rev": ["T62A", "I109V"], "tat": ["E2D", "Q35P"], "vif": ["R181K", "C192H"], "vpr": ["M19T", "Q28R", "E55A", "V70I", "R86-", "V89A", "D91N", "A93S"], "vpu": ["I20V", "D58E", "V65M", "W77-", "D78-", "N81D"]}, "labels": {"aa": "INT: I31V; RT-p51: S173K, A207E; RT-p66: S173K, A207E, S491L; gp120: R18K, N57D, -107S, K203T, I279V, N334T, -370D; gp41: K56R, I188M, A267V, T306A, W314G, F340L; nef: T39A, R188H; p17: L68I, T72S; p24: E180D, T210S; p6: S23-, R33-, E34-, Q35-; pro: K20R, G68E; rev: T62A, I109V; tat: E2D, Q35P; vif: R181K, C192H; vpr: M19T, Q28R, E55A, V70I, R86-, V89A, D91N, A93S; vpu: I20V, D58E, V65M, W77-, D78-, N81D", "clade": "CRF16_A2D"}}, "children": [{"name": "CRF16_A2D_NODE_0000001", "node_attrs": {"div": 0.12131999999999998, "clade_membership": {"value": "CRF16_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["G686T", "C1280T", "T1457C", "A1661C", "-1783A", "G1912A", "G1985A", "T1986C", "A2539G", "G3292A", "G3502A", "G3685A", "C3691T", "A3890T", "T4412C", "G4696A", "C4728A", "G4774A", "T4835G", "C5237T", "A5462G", "C5478T", "A5613T", "C5920T", "G6020A", "-6198G", "-6200A", "-6215A", "A6333C", "G6578A", "G6638A", "G6779C", "C6824T", "-6957C", "T6961C", "-6963A", "-6968T", "A6980G", "-6984A", "-6985A", "A6990G", "G6994T", "A7241C", "G7322T", "A7689G", "A7773G", "T7950C", "T8097C", "T8646C", "C8741T", "T8793G"], "INT": ["S39C"], "gp120": ["V56I", "V242K", "E262K", "E309Q", "H324Y", "I463L"], "gp41": ["V7F", "D129G", "N157S", "L265S", "G322V"], "nef": ["Y102H", "Y120F"], "p17": ["I104L"], "p6": ["-32N"], "pro": ["V63T"], "tat": ["K29R"], "vif": ["G37D", "H48N", "R63K", "H83Q"], "vpr": ["H45Y"]}, "labels": {"aa": "INT: S39C; gp120: V56I, V242K, E262K, E309Q, H324Y, I463L; gp41: V7F, D129G, N157S, L265S, G322V; nef: Y102H, Y120F; p17: I104L; p6: -32N; pro: V63T; tat: K29R; vif: G37D, H48N, R63K, H83Q; vpr: H45Y"}}, "children": [{"name": "AF286239", "node_attrs": {"div": 0.16873, "accession": "AF286239", "clade_membership": {"value": "CRF16_A2D"}, "country": {"value": "KR"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97KR004"}, "LANL_subtype": {"value": "CRF16_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["A152C", "C153G", "C155A", "T156A", "G159T", "C160G", "-161A", "G162A", "T163A", "A168-", "A169-", "A170-", "A171-", "C173-", "A177-", "G178-", "A180-", "C193T", "T227A", "G256A", "T258C", "A261-", "C262-", "C300T", "A301G", "G325A", "A464C", "C471A", "C528G", "G534T", "C558A", "C560T", "A563G", "A569G", "A576G", "C583T", "G608A", "A619G", "A645T", "A685C", "A711-", "G712-", "-717G", "-718G", "G762A", "T763C", "C765T", "G771A", "C772A", "A774T", "C827T", "T893C", "A923T", "T962G", "G978C", "A980G", "A1022G", "C1040T", "A1101G", "A1115G", "C1137T", "T1182C", "T1271A", "C1292A", "A1343C", "C1446A", "A1447C", "A1452T", "A1459T", "C1460A", "A1463G", "G1474A", "T1490G", "G1498A", "A1500-", "T1501-", "T1502-", "-1504T", "-1505T", "A1656C", "A1660G", "G1697A", "A1719G", "A1736G", "T1741C", "C1753T", "C1756A", "-1768T", "-1769G", "-1770A", "-1771A", "-1772A", "-1773A", "-1774A", "-1784A", "-1785C", "C1831T", "C1903T", "A1969G", "G2008A", "G2074A", "T2077G", "T2101A", "G2155A", "T2158C", "A2227G", "A2233G", "T2315C", "G2332A", "A2400T", "G2429A", "C2434T", "T2446A", "T2476C", "C2485T", "A2519G", "C2635T", "A2640G", "C2671T", "G2714A", "A2716T", "T2723C", "A2738T", "C2739A", "G2787A", "T2797C", "A2878G", "G2913A", "A2947G", "C2953T", "A2962G", "G3004A", "A3080G", "G3094A", "A3096C", "T3139C", "A3165G", "T3172C", "C3222T", "G3250A", "C3252T", "A3367G", "A3387C", "A3391G", "G3398A", "T3433C", "G3477A", "G3508T", "A3520G", 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"-6171T", "-6172C", "-6173A", "-6174A", "-6175A", "-6176A", "-6177A", "-6178T", "C6183-", "C6184-", "A6185-", "-6189C", "A6192T", "T6193C", "C6196T", "T6199C", "-6201C", "-6202C", "-6203C", "-6204A", "-6205G", "-6206A", "-6207G", "-6208C", "-6209C", "-6210C", "-6211C", "A6212G", "-6213A", "A6214T", "-6216G", "-6217C", "-6218A", "-6220T", "-6221A", "-6223C", "G6224-", "A6226-", "G6227-", "A6228-", "A6229-", "T6231C", "A6232C", "A6234T", "A6235G", "A6246T", "C6247T", "A6248G", "T6250G", "T6252C", "G6253T", "A6267G", "T6287C", "G6289A", "T6290G", "G6295A", "A6302G", "G6311A", "A6320C", "A6336G", "T6337G", "-6339A", "A6353C", "A6359G", "G6368A", "T6369C", "A6379G", "G6442A", "T6460C", "A6461C", "A6463G", "A6464G", "A6538T", "C6545T", "G6575A", "G6577T", "T6579A", "G6583A", "A6594C", "G6611A", "C6613T", "A6668G", "A6671G", "A6672T", "A6674G", "A6675G", "A6677C", "C6678A", "A6684G", "A6685G", "T6695A", "A6714G", "A6729G", "T6730G", "G6731C", "T6733A", "T6735C", "T6738A", "T6760A", "A6774G", "A6775C", "C6777G", "A6811G", "A6814G", "C6833T", "T6856C", "A6865G", "C6875A", "T6896G", "T6898C", "A6926G", "-6956C", "-6958T", "A6959G", "A6960C", "-6962A", "-6964T", "A6965G", "-6967A", "-6969C", "-6970A", "-6971A", "-6972G", "-6973G", "-6974A", "-6975A", "-6976T", "-6977G", "-6978A", "-6979G", "G6981A", "-6983A", "A6986G", "G6989C", "C6993A", "C6999-", "A7000-", "A7001-", "A7002-", "T7003-", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "A7010-", "A7012G", "A7015T", "A7040G", "G7088A", "C7089A", "A7090C", "T7095C", "A7111C", "A7126G", "G7132A", "T7144G", "G7145A", "G7146A", "G7147C", "A7149G", "-7151G", "-7153G", "A7155G", "A7160G", "-7161C", "-7162A", "T7243A", "C7264T", "A7269G", "G7276A", "A7294G", "G7307-", "T7308-", "T7309-", "G7311C", "C7313G", "G7315T", "G7319C", "C7320T", "T7321G", "A7373G", "A7375G", "C7463A", "T7588C", "A7620G", "T7624C", "G7633C", "G7640A", "T7666G", "A7668G", "A7676G", "G7677A", "A7696T", "G7717A", "C7742A", "T7774C", "A7790G", "A7796T", "T7825C", "A7885G", "A7903G", "T7913G", "G7915A", "A7931C", "A7936G", "A7938C", "G7947A", "C7959A", "A7975C", "G8005C", "A8006G", "T8008G", "C8037T", "C8044A", "G8050A", "T8103C", "T8164C", "A8184G", "G8216A", "G8243T", "C8291A", "C8321T", "C8323A", "A8326G", "C8366A", "A8370T", "G8373C", "T8374C", "G8375A", "G8388A", "G8396A", "A8399G", "G8427C", "G8441A", "G8457A", "A8465G", "G8476T", "C8477T", "G8479A", "T8495C", "C8499G", "T8505A", "C8507T", "A8528G", "G8531A", "A8537G", "T8594G", "A8617G", "T8640C", "C8651A", "A8660G", "A8718G", "A8719G", "T8786C", "G8787A", "A8788G", "A8804G", "A8824C", "A8834G", "A8892G", "A8893T", "G8909T", "A8916G", "G8917T", "G8923A", "T8972C", "-8993C", "C9003T", "C9004A", "G9015-", "G9016-", "T9017C", "G9018A", "T9030G", "A9042-", "T9073C", "C9078T", "A9135G", "T9180G"], "INT": ["E10D", "H16R", "L45V", "V72I", "T122I", "T125P", "V165I", "F185S", "K264R"], "RT-p51": ["K102M", "G112R", "I142V", "Q182R", "E207N", "T215Y", "G231E", "G273E", "I329V", "Q334P", "K357R", "A376V", "T386I", "K431T", "A435T"], "RT-p66": ["K102M", "G112R", "I142V", "Q182R", "E207N", "T215Y", "G231E", "G273E", "I329V", "Q334P", "K357R", "A376V", "T386I", "K431T", "A435T", "R461K", "E471D", "L517I", "Q520L", "G544E"], "gp120": ["D4E", "N5D", "K18R", "V37A", "D57N", "N71G", "N105R", "A106V", "S107K", "-109T", "T110I", "-111N", "-112T", "-113M", "E125-", "I126-", "K127-", "Y131F", "N132E", "M133T", "K138R", "Y145Q", "S146A", "K150E", "V153I", "I156L", "N161L", "S162N", "N167H", "N169D", "V172T", "T203P", "E241N", "M243T", "E247A", "A253T", "N272D", "N273V", "N274G", "T275Q", "K277R", "F281I", "Q287R", "N292R", "D293Q", "I294T", "I295Y", "H302Q", "K307S", "T308R", "P326S", "L341I", "F348V", "N358D", "-368P", "D370V", "N378-", "D384-", "T385-", "I386-", "T387-", "I396V", "A412N", "V414T", "-433A", "N434T", "S436E", "E438-", "T439-", "K472R"], "gp41": ["V2A", "G3V", "L4-", "A6L", "I24V", "L54M", "N96F", "K106R", "E110D", "D113N", "D121E", "K122R", "S125D", "Q147K", "T165S", "L204V", "T210P", "N212T", "G215D", "P219H", "E224D", "I235V", "A245V", "D247E", "V267A", "Q294R", "D305N", "G314W", "L330I"], "nef": ["S8R", "I10L", "V11P", "V16I", "G29R", "A39T", "S45I", "S46N", "P53A", "C55S", "K92R", "E108D", "N126G", "D149S", "S151A", "N161T", "K184V", "R192V", "R194K"], "p1": ["N9H", "K10S"], "p17": ["L46I", "Q65E", "A67S", "L75I", "T81A", "A83V", "K95R", "Q117P", "S126G"], "p2": ["Q8T", "T10S", "-12I", "I13M"], "p24": ["V11T", "H12Y", "A14N", "I15L", "I124V", "D180E", "D187E"], "p6": ["N14D", "I21T", "S25L", "-26Q", "-30L", "R31K", "-33R", "-34E", "-35Q", "-36H", "S51L"], "p7": ["R3K", "R11K", "I12-"], "rev": ["I16V", "I18A", "K20R", "Y28S", "K30D", "D53R", "S54A", "A68T", "S106P"], "tat": ["K19R", "G57R", "S61G", "N62G", "K63T", "D64G", "K71E", "Q76R", "T77P", "V80I", "S81P", "P84T"], "vif": ["F39C", "R47I", "E61G", "L64I", "R67K", "K92E", "D104G", "E117D", "E127K", "A155G", "T156E"], "vpr": ["E25D", "W38*", "G41S", "E48A", "A55T", "L67M", "I84M", "R85P", "R88G"], "vpu": ["L2N", "P3S", "E5Q", "A7L", "A8S", "R37N", "-73G", "-74D", "-75A", "-76N", "N80-", "L82*"]}, "labels": {"aa": "INT: E10D, H16R, L45V, V72I, T122I, T125P, V165I, F185S, K264R; RT-p51: K102M, G112R, I142V, Q182R, E207N, T215Y, G231E, G273E, I329V, Q334P, K357R, A376V, T386I, K431T, A435T; RT-p66: K102M, G112R, I142V, Q182R, E207N, T215Y, G231E, G273E, I329V, Q334P, K357R, A376V, T386I, K431T, A435T, R461K, E471D, L517I, Q520L, G544E; gp120: D4E, N5D, K18R, V37A, D57N, N71G, N105R, A106V, S107K, -109T, T110I, -111N, -112T, -113M, E125-, I126-, K127-, Y131F, N132E, M133T, K138R, Y145Q, S146A, K150E, V153I, I156L, N161L, S162N, N167H, N169D, V172T, T203P, E241N, M243T, E247A, A253T, N272D, N273V, N274G, T275Q, K277R, F281I, Q287R, N292R, D293Q, I294T, I295Y, H302Q, K307S, T308R, P326S, L341I, F348V, N358D, -368P, D370V, N378-, D384-, T385-, I386-, T387-, I396V, A412N, V414T, -433A, N434T, S436E, E438-, T439-, K472R; gp41: V2A, G3V, L4-, A6L, I24V, L54M, N96F, K106R, E110D, D113N, D121E, K122R, S125D, Q147K, T165S, L204V, T210P, N212T, G215D, P219H, E224D, I235V, A245V, D247E, V267A, Q294R, D305N, G314W, L330I; nef: S8R, I10L, V11P, V16I, G29R, A39T, S45I, S46N, P53A, C55S, K92R, E108D, N126G, D149S, S151A, N161T, K184V, R192V, R194K; p1: N9H, K10S; p17: L46I, Q65E, A67S, L75I, T81A, A83V, K95R, Q117P, S126G; p2: Q8T, T10S, -12I, I13M; p24: V11T, H12Y, A14N, I15L, I124V, D180E, D187E; p6: N14D, I21T, S25L, -26Q, -30L, R31K, -33R, -34E, -35Q, -36H, S51L; p7: R3K, R11K, I12-; rev: I16V, I18A, K20R, Y28S, K30D, D53R, S54A, A68T, S106P; tat: K19R, G57R, S61G, N62G, K63T, D64G, K71E, Q76R, T77P, V80I, S81P, P84T; vif: F39C, R47I, E61G, L64I, R67K, K92E, D104G, E117D, E127K, A155G, T156E; vpr: E25D, W38*, G41S, E48A, A55T, L67M, I84M, R85P, R88G; vpu: L2N, P3S, E5Q, A7L, A8S, R37N, -73G, -74D, -75A, -76N, N80-, L82*"}}}, {"name": "AY945736", "node_attrs": {"div": 0.16052999999999998, "accession": "AY945736", "clade_membership": {"value": "CRF16_A2D"}, "country": {"value": "KE"}, "date": {"value": 1991.0}, "Strain_name": {"value": "KNH1271"}, "LANL_subtype": {"value": "CRF16_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "G491A", "A512G", "A513T", "A537G", "T572C", "G579T", "G607A", "A645C", "A675C", "A725G", "C773A", "A806G", "C830T", "C892T", "T893G", "C904T", "G977A", "T979C", "T1004C", "G1019A", "T1037C", "C1091T", "A1160G", "G1173A", "T1174C", "G1199A", "C1299T", "G1301A", "G1313A", "C1316T", "T1329A", "A1412G", "T1444C", "A1445G", "G1472A", "T1481C", "G1486A", "T1502C", "G1526A", "G1562A", "T1653C", "G1662A", "G1673A", "T1679C", "A1709G", "A1720G", "G1766A", "-1768C", "C1775-", "A1776-", "G1777-", "G1778-", "G1779-", "A1780-", "-1784C", "-1785A", "C1826G", "A1839G", "G1852A", "C1853T", "G1857A", "A1900G", "C1913T", "A1926G", "A1972G", "A2005G", "A2032G", "C2075A", "A2099G", "C2105A", "A2222G", "C2296T", "T2393C", "A2461G", "A2470G", "C2605T", "A2677G", "G2725A", "C2818T", "A2828G", "G2884A", "C2910G", "A2925G", "A2937G", "G2951A", "G2980A", "A2985G", "G3019A", "G3029A", "A3058G", "C3067A", "A3079G", "A3196G", "C3223T", "A3265G", "A3277G", "T3308C", "G3316A", "C3321A", "G3483A", "A3522G", "T3544C", "T3566G", "G3616A", "A3637C", "A3703G", "G3737A", "C3751T", "G3787A", "A3838T", "C3857A", "G3859A", "C3908A", "G3925A", "T3943C", "C4015T", "C4132T", "G4156A", "T4165C", "G4178A", "G4264A", "G4267A", "T4276G", "T4291C", "A4315G", "A4376G", "T4471C", "A4474T", "T4667C", "G4673A", "T4674C", "A4688G", "T4701G", "G4719C", "T4726G", "A4727C", "C4806A", "A4816G", "T4827C", "A4862C", "T4901G", "G4965C", "G4982T", "A5005C", "G5052A", "A5119C", "A5122G", "C5125T", "G5137A", "A5151C", "G5167A", "G5185A", "G5187A", "T5206C", "A5210C", "C5213G", "C5214T", "A5215G", "A5285G", "T5311C", "A5345G", "C5351G", "T5356C", "T5357C", "-5361C", "A5364-", "A5366G", "G5370A", "T5424C", "T5442C", "A5444G", "G5448T", "G5482A", "T5483G", "C5554A", "G5558A", "C5559T", "T5577C", "C5579T", "A5586G", "G5602C", "T5627C", "G5628A", 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"p24": ["T54M", "T58I", "L83A", "M96I", "V148T", "S200T"], "p6": ["N14S", "-23P", "P24S", "S25P", "-30P", "R31H"], "p7": ["R7K"], "pro": ["L10V", "K14R", "R20K", "P39S", "K43R", "L93I"], "rev": ["A15I", "I21T", "Q24R", "Y28F", "K30Q", "R32G", "S34T", "L78I", "L83I", "V104G", "E115K"], "tat": ["N23S", "K24N", "V36R", "Q60K", "S61N", "P68L", "Q76P", "Q78R", "V80D", "S81Q"], "vif": ["M29I", "Y30H", "F39V", "E45Q", "R47S", "P74T", "K77R", "K92N", "H105Q", "E127Q", "R130S", "R132S", "N140T", "Q178P", "K179R", "T180I", "R184K", "M189L"], "vpr": ["N16T", "R28N", "P37V", "I61V", "I84T", "A89T"], "vpu": ["L2F", "V14T", "V20I", "F27Y", "E58D", "M65V", "N69D", "L70P", "-77W", "-78D", "-79V"]}, "labels": {"aa": "INT: L28I, L45I, M50I, V135I, D167E, I201V; RT-p51: I2V, P4T, K43E, K245E, A272G, K277R, K281R, A286T, K297R, D312N, D324E, Y405H, T409N; RT-p66: I2V, P4T, K43E, K245E, A272G, K277R, K281R, A286T, K297R, D312N, D324E, Y405H, T409N, R463K, K476R, L491V, E514D, V548I; gp120: T3A, S28A, A32G, D34N, H77N, A106P, T110-, -113N, -114S, -115S, -124G, N132S, Y145W, D159S, S181T, E204Q, R224M, A227V, E241G, M243I, R245K, N252S, V279I, D293T, T308K, Q315K, K316R, R322G, T330N, I332S, G361D, -368T, -372W, -373G, -374E, -375N, -376G, -377T, N378A, -379N, -380D, -381S, -382K, -383S, T387M, R404Q, V414I, M424I, N432E, N435D, E481D; gp41: I24L, N96S, D109G, S138A, L149V, D163S, I191V, T210S, G226D, G230D, W286G, E320V, A328T; nef: R17M, P24-, E28G, G29E, G31E, V33A, S46R, L76V, Y81F, G83A, D98E, K105R, D149E, S151D, E177D, R194T; p1: S8P, K10N, G11R; p17: V7I, I60L, I68V, V82L, R91K, K114Q, Q117H; p2: V7A, -12L; p24: T54M, T58I, L83A, M96I, V148T, S200T; p6: N14S, -23P, P24S, S25P, -30P, R31H; p7: R7K; pro: L10V, K14R, R20K, P39S, K43R, L93I; rev: A15I, I21T, Q24R, Y28F, K30Q, R32G, S34T, L78I, L83I, V104G, E115K; tat: N23S, K24N, V36R, Q60K, S61N, P68L, Q76P, Q78R, V80D, S81Q; vif: M29I, Y30H, F39V, E45Q, R47S, P74T, K77R, K92N, H105Q, E127Q, R130S, R132S, N140T, Q178P, K179R, T180I, R184K, M189L; vpr: N16T, R28N, P37V, I61V, I84T, A89T; vpu: L2F, V14T, V20I, F27Y, E58D, M65V, N69D, L70P, -77W, -78D, -79V"}}}]}, {"name": "CRF16_A2D_NODE_0000002", "node_attrs": {"div": 0.12362999999999999, "clade_membership": {"value": "CRF16_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["C435A", "G771C", "T852A", "C1118A", "C1175T", "T1646C", "A1657G", "C1782-", "T1790C", "G1894A", "C2044T", "A2422G", "G3168A", "A3192G", "C3232T", "A3280G", "C3496T", "G3630A", "T3856C", "A4819C", "G5059A", "A5065G", "A5159G", "C5213A", "A5652T", "A6044G", "A6087T", "-6198C", "-6201T", "-6209A", "T6733C", "G6788A", "C6834A", "G6935A", "C7016A", "G7549A", "C8106T", "C8189T", "G8194A", "G8255A", "G8276A", "C8277T", "A8284G", "G8304C", "C8666A", "C8751T", "T8900C"], "RT-p51": ["R358K", "K366R"], "RT-p66": ["R358K", "K366R"], "gp120": ["N64D", "E78V", "D312N", "G361S", "P389L"], "gp41": ["P216L", "A268V", "V318I", "A325I", "R334T"], "p1": ["N9S"], "p17": ["L34I"], "p24": ["A14P", "S41T"], "rev": ["T114I"], "vif": ["D78A", "T157K", "R158K", "K160R"], "vpr": ["T19A", "P37T"]}, "labels": {"aa": "RT-p51: R358K, K366R; RT-p66: R358K, K366R; gp120: N64D, E78V, D312N, G361S, P389L; gp41: P216L, A268V, V318I, A325I, R334T; p1: N9S; p17: L34I; p24: A14P, S41T; rev: T114I; vif: D78A, T157K, R158K, K160R; vpr: T19A, P37T"}}, "children": [{"name": "KT022403", "node_attrs": {"div": 0.16873, "accession": "KT022403", "clade_membership": {"value": "CRF16_A2D"}, "country": {"value": "KE"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05KE493170V5"}, "LANL_subtype": {"value": "CRF16_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["A353G", "C393A", "A425G", "T486C", "C503T", "T506C", "A515C", "A516C", "C531T", "G534T", "C558A", "A584G", "G614T", "A619G", "C672-", "A673-", "G674-", "A675-", "A676-", "G677-", "A678-", "C679-", "A680-", "G686A", "T695C", "A725G", "T728C", "G784A", "T788C", "T789C", "C845T", "C872T", "G978T", "A989G", "G1109A", "G1192A", "T1214C", "A1265C", "A1277G", 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"C6875A", "T6901C", "C6925T", "T6932A", "-6956G", "-6957G", "-6958A", "-6962G", "-6963A", "-6964C", "-6967T", "-6968G", "-6969T", "-6970T", "-6971A", "-6972A", "-6973C", "-6974A", "-6975C", "-6976A", "-6977C", "-6978C", "-6979A", "G6981A", "A6990C", "-6996G", "-6997T", "-6998T", "C7020T", "A7040G", "C7045T", "G7054A", "C7064A", "C7089A", "T7095A", "A7100C", "C7107T", "A7123T", "A7126G", "G7132A", "G7152-", "C7156G", "-7161T", "-7162C", "C7164G", "C7165T", "C7170T", "G7190A", "A7268C", "A7296G", "A7303G", "C7324T", "A7373C", "A7375G", "C7397A", "A7399C", "G7428A", "G7441A", "A7456G", "G7477T", "C7486A", "G7513A", "T7589A", "T7590A", "C7597A", "T7604A", "C7605A", "A7622T", "G7720A", "G7769T", "A7782G", "T7789C", "C7792T", "A7818G", "T7825C", "G7846A", "A7858G", "G7862A", "A7865G", "G7867T", "A7874G", "G7880A", "A7882G", "G7883A", "T7921C", "A7937C", "G8019A", "G8032A", "C8047T", "G8050A", "T8113A", "G8133A", "G8137A", "C8146T", "C8149T", "A8152G", "T8153C", "T8155C", "A8262G", "G8267A", "C8281T", "T8290C", "A8294C", "C8336T", "G8402A", "G8407A", "C8419T", "G8469A", "C8471T", "A8536G", "G8561A", "T8568C", "C8585T", "T8597C", "G8682A", "C8687T", "C8699A", "T8701A", "T8740C", "A8801G", "G8816A", "A8829T", "C8906T", "A8922C", "G8923T", "T8935A", "G8936C", "T8947A", "C8960A", "T8972C", "T9030G"], "INT": ["K34R", "M50I", "I101V", "K103R", "T125A", "V135I", "K160R", "S255N"], "RT-p51": ["D123N", "Y127F", "E177G", "A272S", "D335G", "K357R", "S359A", "M377Q", "E432D", "A435E"], "RT-p66": ["D123N", "Y127F", "E177G", "A272S", "D335G", "K357R", "S359A", "M377Q", "E432D", "A435E", "L452Q", "V458I", "R461K", "I466V", "S468T", "V496I", "A502V", "R512Q", "V531I"], "gp120": ["T3D", "D4N", "N5R", "L6-", "D34N", "V37S", "S104T", "N105V", "A106D", "-109K", "-123K", "-124E", "N128T", "T134S", "K138R", "K141P", "Y145Q", "L147R", "K150T", "V153L", "Q155K", "N157K", "N158E", "D159N", "T160D", "N161T", "S162L", "N167S", "E183Q", "R224M", "G240R", "E241K", "E247Q", "P271I", "A288V", "Q300E", "N304E", "S306N", "K307Q", "E319I", "K323E", "P326H", "N335K", "L341I", "S360T", "-368G", "-372V", "-373N", "-374T", "-375P", "-376G", "-377S", "L388I", "I396V", "A412E", "V414K", "K416Q", "T418I", "-433E", "N435I", "S436-", "T437S", "T439I", "D446N", "K472Q", "E481G"], "gp41": ["I24L", "Q32N", "S42N", "S101N", "T107S", "A156S", "N160S", "D163N", "K172R", "V187I", "M188V", "I191V", "V193M", "V194I", "N212H", "S239N", "Y284H", "E320G", "G322I", "N331H"], "nef": ["M20I", "R22Q", "A26V", "V43I", "E65G", "V114I", "I133T", "S163C", "R194L", "L198H", "F202Y", "C206*"], "p17": ["I61L", "P66S", "A67S", "L75I", "E93D", "K95R", "Q113-", "K114-", "T115-"], "p2": ["T10G", "-12T"], "p24": ["R18K", "R154K"], "p6": ["F15L", "E19D", "E20-", "I21-", "T22-", "P24-", "S25-", "K27-", "Q28-", "E29-", "R31-", "A38S"], "p7": ["R3K"], "pro": ["E68G", "R70K"], "rev": ["D11E", "A15V", "I19V", "K30T", "A62T", "P67S", "A68T", "C89S", "V97M", "P100S", "Q101*", "I102A", "S103P", "E116K"], "tat": ["K19R", "P35Q", "P58T", "Q60P", "K63T", "H65R", "K71E", "Q76H"], "vif": ["N22H", "Y30H", "K36R", "F39S", "R47T", "H73Q", "E76D", "E117D", "I120V", "K122R", "E127D", "K157R", "T159I", "H183R"], "vpr": ["D7N", "R28S", "I63T", "I70V"], "vpu": ["L2T", "E5Q", "A7G", "V22A", "T24V", "I25L", "V26A", "I28L", "K44E", "S47R", "S62A", "D71-", "F72-", "N80D", "D81F"]}, "labels": {"aa": "INT: K34R, M50I, I101V, K103R, T125A, V135I, K160R, S255N; RT-p51: D123N, Y127F, E177G, A272S, D335G, K357R, S359A, M377Q, E432D, A435E; RT-p66: D123N, Y127F, E177G, A272S, D335G, K357R, S359A, M377Q, E432D, A435E, L452Q, V458I, R461K, I466V, S468T, V496I, A502V, R512Q, V531I; gp120: T3D, D4N, N5R, L6-, D34N, V37S, S104T, N105V, A106D, -109K, -123K, -124E, N128T, T134S, K138R, K141P, Y145Q, L147R, K150T, V153L, Q155K, N157K, N158E, D159N, T160D, N161T, S162L, N167S, E183Q, R224M, G240R, E241K, E247Q, P271I, A288V, Q300E, N304E, S306N, K307Q, E319I, K323E, P326H, N335K, L341I, S360T, -368G, -372V, -373N, -374T, -375P, -376G, -377S, L388I, I396V, A412E, V414K, K416Q, T418I, -433E, N435I, S436-, T437S, T439I, D446N, K472Q, E481G; gp41: I24L, Q32N, S42N, S101N, T107S, A156S, N160S, D163N, K172R, V187I, M188V, I191V, V193M, V194I, N212H, S239N, Y284H, E320G, G322I, N331H; nef: M20I, R22Q, A26V, V43I, E65G, V114I, I133T, S163C, R194L, L198H, F202Y, C206*; p17: I61L, P66S, A67S, L75I, E93D, K95R, Q113-, K114-, T115-; p2: T10G, -12T; p24: R18K, R154K; p6: F15L, E19D, E20-, I21-, T22-, P24-, S25-, K27-, Q28-, E29-, R31-, A38S; p7: R3K; pro: E68G, R70K; rev: D11E, A15V, I19V, K30T, A62T, P67S, A68T, C89S, V97M, P100S, Q101*, I102A, S103P, E116K; tat: K19R, P35Q, P58T, Q60P, K63T, H65R, K71E, Q76H; vif: N22H, Y30H, K36R, F39S, R47T, H73Q, E76D, E117D, I120V, K122R, E127D, K157R, T159I, H183R; vpr: D7N, R28S, I63T, I70V; vpu: L2T, E5Q, A7G, V22A, T24V, I25L, V26A, I28L, K44E, S47R, S62A, D71-, F72-, N80D, D81F"}}}, {"name": "KT022406", "node_attrs": {"div": 0.1633, "accession": "KT022406", "clade_membership": {"value": "CRF16_A2D"}, "country": {"value": "KE"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05KE725124V4"}, "LANL_subtype": {"value": "CRF16_A2D"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "C379G", "A398G", "A423C", "G424A", "G455A", "T485A", "T495G", "A508G", "A509G", "A518G", "G520A", "C525T", "A537G", "G579A", "T602G", "A605G", "A606G", "G614A", "A620G", "G629A", "G687A", "A697C", "C707T", "C734T", "G740A", "G770A", "A774T", "A968G", "G978A", "T992G", "A1017T", "C1060A", "A1070G", "C1094T", "G1301A", "T1329G", "C1331T", "C1334T", "T1359A", "A1404G", "A1442G", "A1449G", "A1450G", "C1478T", "T1481C", "A1532G", "C1556T", "G1586T", "T1676C", "A1719G", "A1735G", "C1756A", "G1764A", "-1768T", "-1769G", "-1770G", "-1771A", "-1772A", "-1773A", "-1774A", "A1781C", "A1786-", "T1787-", "A1804G", "A1846G", "C1853A", "G1981A", "C2047T", "G2074A", "T2080G", "A2203G", "A2211G", "G2229A", "A2241G", "C2296T", "T2365C", "A2416T", "C2452T", "C2456T", "A2463G", "C2464G", "A2473G", "A2482G", "C2499T", "A2566G", "A2579T", "T2749C", "A2828G", "A2872G", "G2884A", "A2974G", "T3034G", "C3067G", "C3175A", "A3205G", "G3221T", "C3252T", "A3283C", "G3307C", "A3388G", "C3405T", "T3436C", "T3472G", "T3497C", "T3517C", "T3535G", "A3607G", "G3631A", "A3637C", "G3684A", "T3695G", "G3718A", "T3746C", "A3748G", "C3751T", "T3778C", "A3816G", "G3866A", "T3909A", "T3943C", "G3997A", "A4057C", "C4068G", "C4072T", "C4140T", "A4148C", "T4177G", "G4244C", "A4246C", "A4254C", "C4258A", "G4268A", "A4270T", "G4366A", "A4407G", "G4637A", "A4646C", "C4703A", "C4715T", "A4727G", "A4739G", "T4799C", "C4914T", "T4976A", "T5051G", "C5056A", "A5060G", "G5075A", "G5143A", "C5170T", "G5179T", "T5188G", "C5214T", "G5225A", "A5236G", "T5242C", "T5260C", "C5263T", "T5286C", "T5293G", "A5302C", "T5356C", "-5361C", "-5362A", "-5363A", "A5364-", "G5365-", "A5366-", "C5393T", "T5424C", "A5433T", "G5437C", "A5444C", "T5451C", "G5463A", "G5482A", "T5483G", "G5556A", "A5581G", "C5584T", "A5621C", "A5622T", "G5628A", "G5639C", "T5648C", "T5653G", "T5654G", "G5671A", "A5716G", "G5717A", "A5720G", "T5728C", "G5729A", "A5734T", "T5735A", "A5746C", "G5747T", "G5784A", "A5788T", "C5789T", "T5836C", "G5839A", "T5851C", "-5861G", "A5935C", "A5947G", "A6037G", "A6066G", "T6100C", "-6169T", "-6170G", "-6171C", "-6172C", "-6173C", "-6174G", "-6175C", "-6176A", "-6177C", "-6178C", "-6179A", "-6180A", "-6181T", "-6182A", "-6186A", "-6187T", "A6188G", "-6189G", "A6192G", "T6193C", "G6195C", "-6200T", "-6202C", "-6208A", "-6210T", "-6211G", "-6213T", "A6219C", "-6220C", "-6221A", "A6222T", "-6223T", "-6225G", "A6246T", "C6263T", "G6289T", "A6292G", "T6301C", "A6304G", "A6318C", "A6327G", "T6331C", "A6333G", "A6336G", "C6338G", "-6339A", "T6369C", "A6379G", "T6395A", "C6397T", "C6482T", "A6502C", "G6553C", "A6576G", "T6579A", "G6583A", "G6611A", "A6668T", "A6669C", "C6670T", "A6671G", "C6678T", "A6736C", "T6745C", "A6753T", "C6758T", "C6769A", "G6779A", "T6793C", "A6800C", "G6802A", "A6810G", "A6818G", "G6819A", "C6829T", "-6830G", "-6831G", "-6832C", "C6833A", "A6836-", "A6837-", "T6838-", "A6848G", "T6849C", "C6855A", "T6856G", "A6857G", "A6858C", "C6864T", "A6947G", "G6952A", "A6959-", "A6960-", "T6961-", "A6965-", "C6966-", "-6977A", "-6978A", "-6979C", "-6983G", "-6984C", "-6985T", "T6988C", "G6989T", "G6994A", "G6995A", "-6996T", "-6997G", "-6998G", "C6999A", "A7000G", "A7012T", "C7014T", "A7015G", "C7019A", "G7065A", "A7094G", "T7150C", "-7151G", "-7153G", "G7154A", "T7159C", "-7161G", "-7162T", "A7177G", "G7198A", "C7250T", "G7275A", "G7366A", "G7459A", "C7561T", "C7603T", "G7627A", "T7630G", "T7636C", "G7657A", "G7688C", "C7690A", "C7699T", "G7726A", "C7747A", "G7753A", "A7791G", "A7871G", "T7876G", "A7885G", "C7935A", "C7959A", "G7992A", "G8001A", "G8173A", "A8195C", "A8196G", "T8209C", "A8264G", "T8268G", "A8269G", "C8291T", "C8293A", "C8311T", "G8317A", "C8320G", "C8323T", "A8329G", "C8331T", "T8333C", "C8336A", "T8337C", "C8366T", "G8385A", "A8426C", "A8429G", "G8441A", "A8446G", "C8455A", "G8476T", "G8479A", "G8487C", "C8499T", "T8505A", "G8506T", "G8531A", "C8546T", "G8590A", "A8591G", "C8603T", "T8610C", "C8652A", "A8656G", "C8688A", "T8700C", "A8815G", "A8819T", "C8867T", "A8887G", "G8888A", "A8892G", "C8904A", "A8905G", "G8945T", "A8977G", "C8978A", "A8979C", "-8993C", "T9012C", "T9017G", "A9019T", "C9023A"], "INT": ["K14R", "V31I", "L45Q", "A98G", "T122I", "T125P", "E157H", "K160T", "V165I", "K211R", "D288N"], "RT-p51": ["K39R", "G45E", "K49R", "H121Y", "D123G", "T135I", "S162C", "K245E", "D324E", "A376S", "T386I", "E396D", "E404D", "A437V"], "RT-p66": ["K39R", "G45E", "K49R", "H121Y", "D123G", "T135I", "S162C", "K245E", "D324E", "A376S", "T386I", "E396D", "E404D", "A437V", "S468P", "H480Q", "R512K", "E514D", "R530K", "S534A"], "gp120": ["T3A", "N71S", "S107R", "N108T", "-109N", "-111N", "-112G", "-113S", "-114T", "-115T", "-116F", "-124G", "Y131F", "Q155P", "N157-", "T160S", "N161D", "V172A", "S181T", "E204K", "P210S", "V242I", "A253T", "N272S", "N273D", "T275I", "Q300L", "H302Y", "E309K", "K316Q", "E319G", "R322E", "P326G", "I332A", "T334K", "N335A", "S337L", "S365G", "-368N", "N369R", "D370A", "T371-", "-379Y", "-380T", "-381M", "-382E", "-383N", "T387M", "L388N", "L389I", "R404Q", "M424I", "-433G", "R474K"], "gp41": ["N96F", "D109E", "D129Q", "D148E", "D163S", "I190V", "I191M", "P211Q", "P219H", "G230D", "R233K", "N298R", "I321V", "A343V", "L345T"], "nef": ["A15T", "E28D", "Q35R", "A38D", "S45I", "S46N", "A49P", "P53S", "C55I", "G83E", "F90L", "Q104K", "K105R", "H116N", "Y120L", "E158G", "K182R", "K184E", "H188S", "E201D"], "p17": ["A15R", "R30Q", "S54A", "K58R", "I61M", "G62E", "I68V", "V82I", "H89Q", "R91G", "A118T", "D121A"], "p2": ["Q8T", "T10L"], "p24": ["I15L", "L83I", "H87Q", "M96L", "T110N", "S200A", "S210T", "S225G"], "p6": ["N14D", "E19G", "-26Q", "-30N", "-32D", "K42R"], "pro": ["L19I"], "rev": ["R14K", "V109I", "E116T"], "tat": ["P6L", "K19N", "A21P", "N23T", "V36R", "I69V", "P70S", "Q76K", "P84T"], "vif": ["F39L", "R47M", "H110Y", "T156A", "S186N"], "vpr": ["E25D", "T37I", "G41S", "I61T", "I63M", "Q66H", "I84T", "-86Q", "R88-"], "vpu": ["E5A", "A7V", "G11A", "V14A", "F16G", "V22I", "R37E", "K38R", "W41Q", "I43Y", "S47L", "-73R", "-74N", "-75A", "-76N", "N80-", "L82Q"]}, "labels": {"aa": "INT: K14R, V31I, L45Q, A98G, T122I, T125P, E157H, K160T, V165I, K211R, D288N; RT-p51: K39R, G45E, K49R, H121Y, D123G, T135I, S162C, K245E, D324E, A376S, T386I, E396D, E404D, A437V; RT-p66: K39R, G45E, K49R, H121Y, D123G, T135I, S162C, K245E, D324E, A376S, T386I, E396D, E404D, A437V, S468P, H480Q, R512K, E514D, R530K, S534A; gp120: T3A, N71S, S107R, N108T, -109N, -111N, -112G, -113S, -114T, -115T, -116F, -124G, Y131F, Q155P, N157-, T160S, N161D, V172A, S181T, E204K, P210S, V242I, A253T, N272S, N273D, T275I, Q300L, H302Y, E309K, K316Q, E319G, R322E, P326G, I332A, T334K, N335A, S337L, S365G, -368N, N369R, D370A, T371-, -379Y, -380T, -381M, -382E, -383N, T387M, L388N, L389I, R404Q, M424I, -433G, R474K; gp41: N96F, D109E, D129Q, D148E, D163S, I190V, I191M, P211Q, P219H, G230D, R233K, N298R, I321V, A343V, L345T; nef: A15T, E28D, Q35R, A38D, S45I, S46N, A49P, P53S, C55I, G83E, F90L, Q104K, K105R, H116N, Y120L, E158G, K182R, K184E, H188S, E201D; p17: A15R, R30Q, S54A, K58R, I61M, G62E, I68V, V82I, H89Q, R91G, A118T, D121A; p2: Q8T, T10L; p24: I15L, L83I, H87Q, M96L, T110N, S200A, S210T, S225G; p6: N14D, E19G, -26Q, -30N, -32D, K42R; pro: L19I; rev: R14K, V109I, E116T; tat: P6L, K19N, A21P, N23T, V36R, I69V, P70S, Q76K, P84T; vif: F39L, R47M, H110Y, T156A, S186N; vpr: E25D, T37I, G41S, I61T, I63M, Q66H, I84T, -86Q, R88-; vpu: E5A, A7V, G11A, V14A, F16G, V22I, R37E, K38R, W41Q, I43Y, S47L, -73R, -74N, -75A, -76N, N80-, L82Q"}}}]}]}, {"name": "results/subtype_trees/A2.nwk", "node_attrs": {"div": 0.11394, "clade_membership": {"value": "A2"}}, "branch_attrs": {"mutations": {"nuc": ["A191-", "A301T", "A380T", "C435T", "G463A", "G468T", "C471A", "T473C", "A508G", "A521G", "A540C", "T549A", "T571A", "G579A", "A585G", "C586T", "T593C", "G607A", "G920A", "T1271G", "G2332A", "A2519G", "C2615A", "A2626G", "T2632C", "C2671T", "G2683T", "A2693G", "A2713G", "C2720T", "A2727G", "C2740T", "A2794G", "T3172C", "T3505G", "A3816G", "T3962C", "A4684G", "C4914T", "A5015G", "C5091T", "A5094G", "C5095T", "T5182C", "T5188G", "T5206C", "A5215G", "C5221A", "T5228C", "A5230G", "A5248T", "T5314C", "-5363A", "T5391C", "C5397A", "C5551T", "G5556A", "A5621C", "G5629T", "T5736C", "A5787C", "-5861A", "-6169T", "-6170G", "-6171C", "-6172C", "-6173A", "-6174A", "A6276C", "A6330G", "C6482T", "C6807T", "A6821G", "T6932A", "-6958G", "-6979A", "-6983C", "-6984C", "-6996A", "-6997G", "-6998T", "-7162T", "A8184G", "C8223T", "A8228G", "T8268G", "C8366-", "C8406A", "A9026-", "G9027A", "T9028G"], "INT": ["K14R"], "RT-p51": ["I142V", "Q174K", "T200A", "K211R"], "RT-p66": ["I142V", "Q174K", "T200A", "K211R"], "gp120": ["N5-", "K141T", "P210S", "A318V", "K323E", "S360T", "-379N", "-380T", "-383N"], "gp41": ["Q294R", "T307I", "I309V"], "nef": ["E108D"], "p17": ["R43K", "A45S", "L46I", "K58R", "K69P", "F79Y", "V82I", "T84V", "C87Y", "R91K"], "p24": ["L83V"], "p6": ["F15L", "P24S"], "tat": ["N7K", "P59S"], "vif": ["K33R", "H110Y", "R130S", "T156S", "T170V"], "vpr": ["E48N", "S96P"], "vpu": ["E5A", "A7L", "A8S", "-79A"]}, "labels": {"aa": "INT: K14R; RT-p51: I142V, Q174K, T200A, K211R; RT-p66: I142V, Q174K, T200A, K211R; gp120: N5-, K141T, P210S, A318V, K323E, S360T, -379N, -380T, -383N; gp41: Q294R, T307I, I309V; nef: E108D; p17: R43K, A45S, L46I, K58R, K69P, F79Y, V82I, T84V, C87Y, R91K; p24: L83V; p6: F15L, P24S; tat: N7K, P59S; vif: K33R, H110Y, R130S, T156S, T170V; vpr: E48N, S96P; vpu: E5A, A7L, A8S, -79A", "clade": "A2"}}, "children": [{"name": "A2_NODE_0000001", "node_attrs": {"div": 0.11632, "clade_membership": {"value": "A2"}}, "branch_attrs": {"mutations": {"nuc": ["G519A", "G542A", "G706A", "C731T", "A1450G", "C1610T", "G1673A", "-1747C", "G1766A", "-1768T", "-1769G", "G2630A", "G3029A", "G3667A", "G3736A", "G4677A", "A5291T", "T5292A", "G5545A", "T5568C", "T5688C", "G5739A", "-6181C", "-6340G", "T6395A", "-6963G", "-6968T", "-6969G", "-6970G", "-6972G", "-6975C", "-6985T", "A7160G", "A7590C", "A7938G", "C8095A", "G8864T", "G8888A"], "RT-p51": ["V179I"], "RT-p66": ["V179I"], "gp120": ["S181T", "N383S"], "gp41": ["N96T"], "nef": ["E174D"], "p17": ["G62R", "S124N"], "p6": ["-30L"], "rev": ["I18T", "L83I"], "tat": ["T77A"], "vif": ["V31I"], "vpr": ["I63Y"]}, "labels": {"aa": "RT-p51: V179I; RT-p66: V179I; gp120: S181T, N383S; gp41: N96T; nef: E174D; p17: G62R, S124N; p6: -30L; rev: I18T, L83I; tat: T77A; vif: V31I; vpr: I63Y"}}, "children": [{"name": "AF286237", "node_attrs": {"div": 0.15629, "accession": "AF286237", "clade_membership": {"value": "A2"}, "country": {"value": "CY"}, "date": {"value": 1994.0}, "Strain_name": {"value": "94CY017_41"}, "LANL_subtype": {"value": "A2"}}, "branch_attrs": {"mutations": {"nuc": ["-166T", "-167G", "-172G", "-174G", "-175A", "-176A", "-179T", "T201C", "A224G", "A304T", "G317A", "G354A", "A437G", "A461G", "C473T", "T495C", "A500G", "A579G", "C583T", "T596G", "A607G", "A609G", "G614T", "A663-", "A664-", "A665-", "C666-", "A667-", "C668-", "G677A", "G686T", "A704G", "C773T", "T788G", "A797C", "C845T", "T852A", "A1079T", "A1092G", "C1094T", "T1100C", "C1118T", "C1220T", "A1226G", "C1247A", "T1262C", "A1289G", "A1327G", "T1358C", "A1359T", "A1442T", "A1459C", "G1586A", "T1724G", "G1725A", "-1746T", "-1748C", "T1752-", "C1753-", "G1754-", "C1756T", "-1770G", "-1771A", "-1772G", "-1773A", "-1774C", "-1783C", "-1784A", "-1785T", "C1831T", "A1840G", "A1846G", "C1903A", "C1910T", "T1986C", "A2038C", "T2053C", "C2149T", "T2206C", "C2326T", "T2408G", "A2422T", "A2500C", "A2593G", "A2612T", "A2617G", "C2621A", "G2626A", "A2627T", "G2681A", "T2683C", "C2694T", "T2719C", "G2727A", "A2738T", "C2739A", "A2881G", "G2884A", "C2975A", "A2995G", "G3004A", "G3019A", "C3023T", "A3030C", "A3124G", "A3130C", "A3136G", "A3142G", "A3165G", "G3188A", "A3196G", "G3221A", "A3238G", "G3264A", "A3280G", "A3302G", "A3370G", "A3583G", "G3616A", "T3628A", "T3644A", "G3694A", "T3773C", "A3805G", "T3826C", "G3859A", "A3866G", "A3979T", "A4000G", "A4012G", "G4046A", "G4063T", "C4140T", "G4178A", "G4186A", "C4321T", "T4412C", "C4501T", "T4543C", "A4661T", "T4701G", "G4708A", "C4728A", "G4737A", "T4776A", "C4806A", "C4807T", "G4838A", "G4859A", "A4862C", "A4869C", "G4870A", "T4959A", "T5043G", "G5128A", "C5214A", "G5215C", "G5230A", "C5237T", "T5239C", "G5246A", "C5280T", "A5284C", "T5294C", "A5345G", "A5444C", "G5448A", "A5461C", "A5462G", "G5463C", "A5481G", "G5482T", "C5491A", "T5517C", "G5532A", "A5533C", "G5546A", "A5547G", "A5555C", "C5621T", "T5629G", "A5652T", "A5751G", "C5787A", "A5788C", "C5789T", "A5794G", "T5807G", "A5824C", "T5836G", "C5843T", "T5851G", "G5857A", "-5866T", "A5867-", "A5868-", "T5869-", "G5907A", "G5917T", "C5922T", "C5974A", "G6020A", "C6052T", "T6085A", "T6100C", "C6101T", "T6142G", "C6153T", "-6175T", "-6176A", "-6177C", "-6178C", "-6179A", "-6180G", "A6185C", "-6187T", "-6189G", "-6198G", "-6200A", "-6201G", "-6202C", "-6203A", "-6204C", "-6205C", "-6206C", "-6207A", "-6208G", "-6209A", "-6210G", "-6211C", "-6212C", "-6213C", "-6214C", "-6215A", "-6216T", "-6217T", "-6221A", "-6222A", "-6223T", "-6225A", "T6252C", "G6253T", "G6260A", "A6261T", "A6267G", "G6280A", "C6286T", "A6303G", "A6320C", "A6326G", "G6329A", "A6336C", "-6339T", "G6368A", "T6369C", "T6382G", "A6461C", "A6462C", "A6465G", "G6525A", "G6526A", "A6576G", "G6578A", "T6579A", "G6583A", "G6605A", "A6628T", "G6638A", "A6648T", "A6654C", "C6660T", "T6733A", "T6745C", "G6771A", "G6779T", "A6780T", "T6807C", "A6823G", "C6824A", "C6826A", "T6838G", "A6844C", "A6855C", "T6876C", "A6891T", "G6906C", "A6947G", "C6949T", "-6956T", "-6957G", "-6962G", "-6964T", "-6967G", "-6971A", "-6973G", "-6974C", "-6976C", "-6977T", "-6978A", "A6979C", "-6981C", "G6982A", "G6989A", "G6994C", "G6995A", "G6997T", "T6998G", "C6999G", "A7002G", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "C7014T", "A7015C", "C7064A", "G7094A", "G7147T", "A7148-", "A7149-", "T7150-", "G7152-", "A7161G", "T7162G", "C7165T", "G7225A", "A7241C", "C7264T", "A7269G", "G7275A", "G7276A", "A7373C", "C7411T", "A7439C", "G7450A", "G7477A", "A7504G", "A7507G", "C7532A", "A7583G", "T7604A", "A7622T", "G7688A", "C7692T", "C7699T", "C7703T", "G7720A", "A7741G", "A7772G", "A7782G", "T7789C", "A7795T", "A7796T", "A7799C", "A7818G", "A7865T", "T7877A", "T7913G", "T7950C", "G7961A", "A7964G", "T7968C", "G8019A", "A8023G", "A8029C", "G8050A", "C8071T", "A8132T", "C8146T", "A8152G", "T8153A", "T8176C", "T8209C", "C8221T", "A8269G", "G8280T", "C8323A", "-8366G", "G8373C", "T8374C", "G8375A", "G8388A", "G8418A", "G8424C", "G8427A", "A8459T", "G8461A", "C8514G", "G8537A", "A8573G", "A8584T", "T8594G", "C8607T", "A8608T", "C8676A", "C8751T", "T8786A", "T8789G", "G8807A", "G8814C", "A8859G", "G8873A", "A8887G", "A8892G", "T8903A", "C8904A", "T8914G", "T8947A", "C8978A", "A8980G", "A8991G", "-8993T", "G9005A", "A9019T", "-9026A", "A9027G", "G9028T", "T9030G", "T9073C", "C9078A", "T9115C", "A9135G", "T9176A"], "INT": ["I31V", "A91T", "E96D", "T122I", "V135I"], "RT-p51": ["S105A", "P176T", "I178L", "G196S", "A200V", "R211K", "T215Y", "P294T", "D312T", "K357R", "V365I", "A376T", "R390K", "T403A"], "RT-p66": ["S105A", "P176T", "I178L", "G196S", "A200V", "R211K", "T215Y", "P294T", "D312T", "K357R", "V365I", "A376T", "R390K", "T403A", "S491L", "D511E", "L517I"], "gp120": ["R18K", "E21D", "T23I", "V56I", "H77Q", "T100I", "-107N", "N108T", "-109S", "-111H", "-112S", "-113N", "-114S", "-115S", "-116S", "-117T", "-118Q", "-119S", "-120I", "-121N", "-122E", "M133T", "E136I", "K138R", "K150R", "I156L", "N157D", "D159K", "T160N", "N161T", "V172T", "K203P", "E204R", "R224K", "E241G", "V242K", "M243I", "D251N", "E262K", "Q265L", "N267T", "T269I", "D293E", "S306N", "E309L", "V318A", "H324K", "N327K", "N334T", "L341P", "H346L", "G351A", "S365G", "-368W", "-370N", "-372P", "-381N", "-382G", "D384-", "T385-", "T387I", "V414I", "M424I", "N435G", "S436T", "T437N", "I463L", "K472R", "R474K"], "gp41": ["I24L", "K46Q", "Q77K", "T94A", "S101T", "T107S", "D129N", "T130I", "N157D", "N160S", "D163N", "T165S", "N166H", "K172R", "I188F", "S192T", "L204V", "N212S", "G220R", "R221G", "I222T", "S239N", "L242F", "Y284N", "C326F", "F340L"], "nef": ["S8R", "V11P", "V16I", "A26T", "E28Q", "G29R", "R40H", "L58V", "Y81F", "H89F", "L112M", "D149E", "E158Q", "I173V", "K182R", "K184E", "S187R", "R188S", "L191R", "F202Y"], "p17": ["V7I", "S54P", "P69Q", "I82V", "A83V", "Y87W", "K91R", "I92V", "E93D", "H111Q", "Q113T", "K114-", "T115-", "Q117H"], "p2": ["Q6H", "N9S", "-12T"], "p24": ["S41T", "N121D", "K199R", "T210S"], "p6": ["G16R", "S25L", "R31E", "-32T", "Q35P", "-36Y", "S51L"], "pro": ["D35E", "V63A"], "rev": ["M1T", "G6D", "D11S", "R14Q", "R38Q", "K39R", "I59V", "S61R", "A68T", "Q95L", "P100S", "I102E"], "tat": ["N23T", "K29R", "V36L", "L39I", "G57K", "Q60P", "S81P", "S87P"], "vif": ["F39V", "R41K", "H48N", "V51I", "L64I", "P74I", "K92N", "S95H", "L125I", "L153V", "R181K"], "vpr": ["P37H", "H45Y", "A59V"], "vpu": ["A5V", "S8A", "F16L", "T63A", "M67R", "N69-", "L70-", "D71-", "F72-", "-73H", "-74L", "-75D", "-76F", "W77G", "A79V", "L82V"]}, "labels": {"aa": "INT: I31V, A91T, E96D, T122I, V135I; RT-p51: S105A, P176T, I178L, G196S, A200V, R211K, T215Y, P294T, D312T, K357R, V365I, A376T, R390K, T403A; RT-p66: S105A, P176T, I178L, G196S, A200V, R211K, T215Y, P294T, D312T, K357R, V365I, A376T, R390K, T403A, S491L, D511E, L517I; gp120: R18K, E21D, T23I, V56I, H77Q, T100I, -107N, N108T, -109S, -111H, -112S, -113N, -114S, -115S, -116S, -117T, -118Q, -119S, -120I, -121N, -122E, M133T, E136I, K138R, K150R, I156L, N157D, D159K, T160N, N161T, V172T, K203P, E204R, R224K, E241G, V242K, M243I, D251N, E262K, Q265L, N267T, T269I, D293E, S306N, E309L, V318A, H324K, N327K, N334T, L341P, H346L, G351A, S365G, -368W, -370N, -372P, -381N, -382G, D384-, T385-, T387I, V414I, M424I, N435G, S436T, T437N, I463L, K472R, R474K; gp41: I24L, K46Q, Q77K, T94A, S101T, T107S, D129N, T130I, N157D, N160S, D163N, T165S, N166H, K172R, I188F, S192T, L204V, N212S, G220R, R221G, I222T, S239N, L242F, Y284N, C326F, F340L; nef: S8R, V11P, V16I, A26T, E28Q, G29R, R40H, L58V, Y81F, H89F, L112M, D149E, E158Q, I173V, K182R, K184E, S187R, R188S, L191R, F202Y; p17: V7I, S54P, P69Q, I82V, A83V, Y87W, K91R, I92V, E93D, H111Q, Q113T, K114-, T115-, Q117H; p2: Q6H, N9S, -12T; p24: S41T, N121D, K199R, T210S; p6: G16R, S25L, R31E, -32T, Q35P, -36Y, S51L; pro: D35E, V63A; rev: M1T, G6D, D11S, R14Q, R38Q, K39R, I59V, S61R, A68T, Q95L, P100S, I102E; tat: N23T, K29R, V36L, L39I, G57K, Q60P, S81P, S87P; vif: F39V, R41K, H48N, V51I, L64I, P74I, K92N, S95H, L125I, L153V, R181K; vpr: P37H, H45Y, A59V; vpu: A5V, S8A, F16L, T63A, M67R, N69-, L70-, D71-, F72-, -73H, -74L, -75D, -76F, W77G, A79V, L82V"}}}, {"name": "GU201516", "node_attrs": {"div": 0.15535000000000002, "accession": "GU201516", "clade_membership": {"value": "A2"}, "country": {"value": "CM"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01CM_1445MV"}, "LANL_subtype": {"value": "A2"}}, "branch_attrs": {"mutations": {"nuc": ["A412G", "C426A", "T466A", "C482T", "A497G", "G508A", "A530T", "C531T", "A541C", "A543G", "C544T", "T567C", "G595A", "G608A", "T635C", "A645T", "A653G", "A656G", "C666T", "A697C", "C707T", "A725G", "A764G", "A779G", "G821A", "C884T", "A941G", "A1202C", "G1256A", "G1271T", "C1280T", "T1329A", "C1331T", "T1335C", "A1343G", "G1354C", "A1404G", "T1421C", "G1443A", "A1448C", "C1460T", "A1461G", "G1487A", "A1492C", "C1571T", "T1646C", "T1653C", "T1676C", "T1682C", "A1709G", "T1722G", "A1743-", "C1744-", "C1745-", "-1746G", "-1748T", "C1755T", "-1770A", "-1771G", "-1772A", "-1773A", "-1774A", "-1783A", "-1784A", "-1785C", "G1791A", "A1804G", "C1853T", "T1873C", "A1900G", "C1903T", "A1926G", "T1954G", "A1993G", "G2001A", "G2065A", "A2215C", "C2266T", "C2456T", "C2485T", "C2488A", "C2499T", "C2589T", "T2737C", "A2764G", "A2839G", "A2875G", "A2918C", "G2932A", "A2937G", "C2978T", "G2980A", "A2985G", "T3072C", "A3088G", "A3091G", "A3097G", "T3170A", "C3175T", "C3222T", "A3259G", "G3304A", "T3358C", "A3386C", "C3399T", "A3448G", "G3457A", "A3522G", "C3541T", "G3556A", "T3567C", "T3598C", "A3665G", "G3674A", "G3686A", "C3712T", "T3755A", "C3756G", "G3766A", "C3908T", "G3925A", "G4060A", "G4063A", "C4072T", "G4267A", "C4288T", "G4353A", "A4354C", "T4471G", "G4549A", "C4569T", "G4696A", "T4697G", "T4706C", "A4709G", "A4717T", "G4735A", "G4766A", "G4769A", "C4820A", "G4864A", "T4868C", "A4895G", "A4968T", "G4981A", "G5099A", "G5143A", "C5168T", "G5226A", "C5228T", "C5250T", "G5330A", "G5382A", "G5418A", "A5432G", "G5448T", "A5461G", "A5462T", "G5463T", "A5471G", "T5472G", "C5491T", "A5561G", "A5581G", "C5584T", "A5587G", "G5602A", "T5611C", "A5613G", "A5655C", "G5692C", "G5700A", "A5701G", "A5704C", "G5775A", "G5864-", "A5865-", "G5902A", "T5944A", "C5958G", "G5965A", "A6001T", "A6023G", "G6029A", "G6079A", "G6099A", "A6120T", "T6134C", "T6155C", "A6167G", "T6169A", "C6171T", "C6172T", "-6175A", "-6176G", "-6177A", "-6178T", "-6179A", "-6180A", "A6186C", "-6187G", "-6189A", "C6190-", "A6191-", "A6192-", "T6193-", "A6194-", "G6195-", "C6196-", "A6197-", "T6199-", "G6224-", "A6232G", "A6248T", "A6249T", "T6250A", "A6254C", "A6281G", "A6304G", "G6311A", "G6323A", "G6330A", "A6333C", "T6334G", "A6335C", "T6337G", "-6339C", "A6353C", "A6354G", "T6382C", "G6391A", "A6466G", "A6488C", "A6489G", "C6534T", "G6573A", "G6577A", "G6593A", "T6598C", "A6599T", "G6731A", "T6735A", "T6760C", "A6776G", "A6781C", "A6789T", "C6790T", "G6809A", "A6818C", "G6819A", "A6820C", "G6821A", "A6822G", "A6823C", "-6830C", "-6831C", "-6832T", "C6833A", "C6834A", "A6836G", "A6837C", "A6840C", "A6858G", "T6860C", "A6921T", "C6938T", "T6943C", "G6952A", "-6956A", "-6957C", "-6962A", "-6964C", "-6967A", "-6971A", "-6973A", "-6974A", "-6976G", "-6977A", "-6978T", "A6980G", "-6981T", "C6983T", "A6986-", "A6987C", "C6991A", "C6993G", "C7008A", "C7020A", "G7026A", "A7036G", "C7107T", "C7114T", "T7117C", "A7126G", "A7129C", "T7150G", "-7151C", "-7153C", "A7154-", "A7155-", "C7156-", "A7163T", "A7177G", "G7256A", "T7323C", "C7324T", "A7345T", "T7462G", "C7498T", "G7517A", "G7519A", "A7553C", "C7576T", "C7597T", "G7621A", "C7623A", "G7628A", "A7629G", "G7631C", "C7658G", "A7660G", "A7672G", "C7690A", "G7701A", "G7702A", "A7714C", "T7748G", "A7791G", "G7857A", "C7869T", "A7874T", "G7883A", "A7918G", "T7921G", "A7937C", "C7960A", "G7962A", "G7970A", "G7992A", "G8001C", "G8005A", "A8006G", "C8047T", "T8089C", "T8097C", "G8117A", "A8118C", "A8143G", "C8147A", "A8204G", "G8208A", "T8213G", "A8219G", "G8231A", "T8243G", "A8264C", "G8276A", "C8277T", "G8304C", "C8323T", "A8335G", "G8349A", "G8354A", "G8356T", "A8364-", "G8365-", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "T8390C", "C8455G", "G8476T", "A8478C", "C8499T", "T8504C", "G8534T", "T8568C", "C8666A", "C8676T", "A8693G", "T8720C", "A8739G", "A8744G", "A8746T", "G8787A", "A8852G", "A8893G", "G8905A", "G8933A", "C8937T", "G8945T", "T8972C", "G8977A", "C8979A", "T9012C", "T9017G", "T9095C", "G9096T", "G9099A", "G9132A"], "INT": ["M50I", "G193D", "D232E", "A265V"], "RT-p51": ["E40D", "H121Y", "T135I", "T165I", "S173T", "K275Q", "K281R", "K297R", "D312N", "I326T", "S359T", "A376V", "K431Q", "A435V"], "RT-p66": ["E40D", "H121Y", "T135I", "T165I", "S173T", "K275Q", "K281R", "K297R", "D312N", "I326T", "S359T", "A376V", "K431Q", "A435V", "K476R", "K524E", "E527K", "V531I"], "gp120": ["D4N", "T35R", "N57D", "E59K", "S82N", "K89M", "N105E", "A106V", "-107K", "N108D", "-109N", "-111T", "-112K", "I126M", "N132L", "T134P", "K143E", "V153I", "N161Q", "S162P", "N167R", "E204K", "K212R", "A227V", "G240E", "E247K", "I249F", "D293N", "I294K", "T308A", "E309D", "D312V", "E319K", "R322H", "E323S", "-328A", "K329T", "N335S", "S336P", "Y356F", "-368T", "-370S", "-372W", "N378-", "T380E", "-381R", "-382E", "T385N", "P389Q", "R391K", "T418I", "N432K", "-433R", "N435D", "T437S", "V468I"], "gp41": ["V7A", "H53Q", "V72I", "I84L", "T107N", "D109S", "E110Q", "Q119E", "D129E", "R133K", "E137D", "L149V", "D163S", "R185K", "A189V", "I191F", "V194I", "F206L", "N212R", "P216L", "G220E", "E223K", "G230D", "R233T", "I235V", "L265S", "E272T", "L282I", "I301V", "S302N", "F304V", "T306A", "A310T", "W314G", "I321L", "A325I", "R334T"], "nef": ["G3S", "W5L", "S8-", "S9-", "I10-", "V11-", "A38G", "S45I", "S46R", "P53S", "E64S", "D108E", "I133V", "Y135F", "D149N", "K184R", "R188H", "H199Y", "E201D"], "p1": ["S8P"], "p17": ["K26R", "L31M", "F44Y", "R58K", "Q65H", "P66S", "T70V", "I104L", "H111Y", "D121A"], "p2": ["V7-", "Q8-", "N9-", "T10-", "N11-"], "p24": ["E180D", "S200T", "G208A", "S225G"], "p6": ["L15V", "T22A", "-32N", "-36H", "P37T", "A38P", "I39T", "K42R"], "p7": ["Q9P"], "pro": ["K43R", "G68E", "M89I"], "rev": ["R14K", "I16V", "K30T", "R41Q", "Q51H", "D53S", "P67S", "G90D", "R99G", "P100H"], "tat": ["K19R", "K24N", "K29V", "Y32W", "G57R", "N62S", "I69V", "P70S", "K71E", "Q76H", "P84Q", "E85K"], "vif": ["G37E", "Y44F", "R50K", "D78E", "R93K", "I128L", "R132K", "S186N"], "vpr": ["G41D", "N48D", "T49I", "A93T"], "vpu": ["E29Q", "K32E", "I33L"]}, "labels": {"aa": "INT: M50I, G193D, D232E, A265V; RT-p51: E40D, H121Y, T135I, T165I, S173T, K275Q, K281R, K297R, D312N, I326T, S359T, A376V, K431Q, A435V; RT-p66: E40D, H121Y, T135I, T165I, S173T, K275Q, K281R, K297R, D312N, I326T, S359T, A376V, K431Q, A435V, K476R, K524E, E527K, V531I; gp120: D4N, T35R, N57D, E59K, S82N, K89M, N105E, A106V, -107K, N108D, -109N, -111T, -112K, I126M, N132L, T134P, K143E, V153I, N161Q, S162P, N167R, E204K, K212R, A227V, G240E, E247K, I249F, D293N, I294K, T308A, E309D, D312V, E319K, R322H, E323S, -328A, K329T, N335S, S336P, Y356F, -368T, -370S, -372W, N378-, T380E, -381R, -382E, T385N, P389Q, R391K, T418I, N432K, -433R, N435D, T437S, V468I; gp41: V7A, H53Q, V72I, I84L, T107N, D109S, E110Q, Q119E, D129E, R133K, E137D, L149V, D163S, R185K, A189V, I191F, V194I, F206L, N212R, P216L, G220E, E223K, G230D, R233T, I235V, L265S, E272T, L282I, I301V, S302N, F304V, T306A, A310T, W314G, I321L, A325I, R334T; nef: G3S, W5L, S8-, S9-, I10-, V11-, A38G, S45I, S46R, P53S, E64S, D108E, I133V, Y135F, D149N, K184R, R188H, H199Y, E201D; p1: S8P; p17: K26R, L31M, F44Y, R58K, Q65H, P66S, T70V, I104L, H111Y, D121A; p2: V7-, Q8-, N9-, T10-, N11-; p24: E180D, S200T, G208A, S225G; p6: L15V, T22A, -32N, -36H, P37T, A38P, I39T, K42R; p7: Q9P; pro: K43R, G68E, M89I; rev: R14K, I16V, K30T, R41Q, Q51H, D53S, P67S, G90D, R99G, P100H; tat: K19R, K24N, K29V, Y32W, G57R, N62S, I69V, P70S, K71E, Q76H, P84Q, E85K; vif: G37E, Y44F, R50K, D78E, R93K, I128L, R132K, S186N; vpr: G41D, N48D, T49I, A93T; vpu: E29Q, K32E, I33L"}}}]}, {"name": "A2_NODE_0000002", "node_attrs": {"div": 0.11695, "clade_membership": {"value": "A2"}}, "branch_attrs": {"mutations": {"nuc": ["G279A", "G480A", "A562G", "C734T", "C1767-", "A2612G", "G3168A", "A3565G", "G3574A", "C4428T", "A5159G", "C5263T", "G5482A", "T5483G", "A6044G", "-6175C", "C6184T", "-6187C", "-6189C", "-6198C", "-6225A", "A6464G", "G6575A", "C6636A", "A6648C", "-6956G", "-6957A", "A6980C", "-6985A", "-7151A", "A7155G", "A7790G", "C7801A", "C8189T", "T8292G", "T8387G", "C8494A"], "RT-p51": ["S173A", "R358K"], "RT-p66": ["S173A", "R358K"], "gp120": ["N64D", "D159S", "E241K", "T261N", "Q265P", "-368E", "-381E", "-382S", "-433S"], "gp41": ["N166K", "P216L", "L330R"], "nef": ["T51N"], "p17": ["G49S", "K76R"], "rev": ["T114I"], "tat": ["V36R"], "vpr": ["M19V"]}, "labels": {"aa": "RT-p51: S173A, R358K; RT-p66: S173A, R358K; gp120: N64D, D159S, E241K, T261N, Q265P, -368E, -381E, -382S, -433S; gp41: N166K, P216L, L330R; nef: T51N; p17: G49S, K76R; rev: T114I; tat: V36R; vpr: M19V"}}, "children": [{"name": "MH705163", "node_attrs": {"div": 0.14096999999999998, "accession": "MH705163", "clade_membership": {"value": "A2"}, "country": {"value": "CD"}, "date": {"value": 1987.0}, "Strain_name": {"value": "PBS1195"}, "LANL_subtype": {"value": "A2"}}, "branch_attrs": {"mutations": {"nuc": ["T154G", "-161G", "-166A", "-172T", "-174T", "-175C", "-176T", "-179C", "-181G", "-182T", "-183G", "-184G", "-185C", "-186G", "-187C", "-188C", "-189C", "-190G", "-191A", "G256A", "C264A", "A398G", "G401A", "A412G", "C426A", "T468G", "A471C", "C482T", "T495A", "A518C", "A541C", "G595A", "G615A", "C668T", "G686T", "G696A", "C879G", "A880G", "A881T", "C892T", "T893G", "A980C", "T988C", "G998A", "T1052C", "A1097G", "G1126A", "T1181A", "T1325C", "T1385C", "A1412G", "G1476A", "T1520C", "T1679C", "C1681A", "T1722C", "G1766C", "C1775-", "A1776-", "G1777-", "G1778-", "G1779-", "A1780-", "A1781-", "C1782-", "-1785G", "A1786T", "A1900G", "T1948A", "T2066C", "G2111A", "A2114G", "A2211G", "A2500G", "T2527C", "G2530A", "G2567T", "C2605A", "G2704A", "A2767G", "A2773T", "G2914A", "A2923G", "A2937G", "A2969G", "T3002A", "A3279G", "A3439G", "C3471G", "A3474G", "A3522G", "T3559C", "A3675G", "A3814G", "A3838C", "A3871C", "G4129A", "C4140T", "G4195A", "G4353A", "T4435C", "G4459A", "T4537G", "T4543G", "C4569T", "G4685A", "A4694C", "C4715T", "C4754T", "G4760A", "G4767T", "G4769C", "G4770T", "C4824T", "G4865A", "A4878G", "G5015A", "C5019T", "A5042G", "G5087A", "G5123A", "G5195A", "C5214A", "A5238T", "G5246C", "G5257A", "T5286C", "T5292C", "C5303T", "T5356C", "G5523A", "G5531A", "A5555C", "A5561G", "G5620A", "C5621A", "A5652G", "T5666C", "A5720G", "C5763T", "G5784A", "A5845C", "G5864-", "A5865-", "G5902A", "G5917A", "T5944C", "A5962G", "A6066G", "A6087T", "C6151T", "A6174C", "-6179G", "-6180T", "-6181C", "C6183A", "A6186G", "T6199C", "-6200A", "-6201T", "-6202C", "-6221A", "-6222C", "-6223T", "T6250G", "A6251G", "G6253T", "A6257C", "A6275C", "A6282G", "A6333C", "A6335C", "T6337G", "C6338-", "A6371C", "C6373T", "A6376C", "C6427T", "T6511C", "G6547A", "T6562C", "G6578A", "C6641T", "C6660G", "A6664G", "T6733C", "G6779A", "G6803A", "A6848G", "T6856A", "C6859A", "T6860C", "A6907G", "G6936C", "A6965-", "C6966-", "-6970G", "-6971A", "-6972G", "-6973A", "-6974A", "-6975T", "-6976G", "-6977A", "-6978C", "-6981G", "A6990G", "A7113C", "A7148G", "-7153T", "A7154G", "C7156G", "T7159C", "C7170T", "A7241C", "G7366A", "G7390A", "A7427G", "A7570T", "G7594A", "G7628A", "A7629G", "C7690T", "G7702A", "A7714C", "G7735A", "A7773G", "A7782G", "G7846A", "A7865G", "A7887G", "G7896T", "C7898G", "A7899G", "C7941A", "G7979A", "C8047T", "G8170A", "A8173C", "A8196G", "G8254A", "G8276A", "C8277T", "-8366T", "G8402A", "G8407A", "G8469A", "G8502A", "G8534A", "T8568G", "A8584T", "T8595A", "T8597G", "A8701T", "A8887G", "A8944C", "G8945T", "C8978A", "-8993T"], "INT": ["T122I", "G193E", "T218I", "N254K", "D256E", "A265V"], "RT-p51": ["E6K", "T7A", "K39R", "A158S", "K281R", "I292V", "L303M", "K395R"], "RT-p66": ["E6K", "T7A", "K39R", "A158S", "K281R", "I292V", "L303M", "K395R", "T459S", "D460G", "K476R", "S491L", "E527G"], "gp120": ["D4N", "N71S", "E78V", "S104T", "N105E", "A106-", "N108-", "T110-", "N132K", "M133V", "T135P", "T141P", "K143R", "N157S", "N158S", "N161T", "S162Q", "I173L", "V242I", "P263S", "T269S", "E309K", "V317I", "I332V", "N334K", "N335K", "S336P", "G361A", "T371-", "N378K", "N420T", "M424I", "N432D", "N434G", "S436N", "T439I", "I463L"], "gp41": ["S42G", "D109S", "E137D", "N157S", "N160S", "I188V", "N195S", "R198M", "Q199G", "P213Q", "G226S", "L290F", "N298S", "A325I"], "nef": ["M20I", "R22K", "V43I", "D54N", "L76V", "Y81F", "F85M", "Y120F", "K182R", "E201A"], "p17": ["K26R", "L31M", "S45A", "I46L", "S54T", "V94I", "Q117H", "D121N"], "p2": ["-12P"], "p24": ["Q50G", "T54M", "V86A", "R132K"], "p6": ["P1H", "S25P", "K27-", "Q28-", "E29-", "R31-", "R33K", "E34Q", "Q35D", "-36V"], "p7": ["G4S"], "rev": ["G3E", "G6R", "R14Q", "I16V", "R44K", "P67S", "V108I", "I109L"], "tat": ["R52Q", "Q60P", "N62S", "Q78K"], "vif": ["K36N", "E61Y", "A62S", "H80Y", "I98V"], "vpr": ["D7N", "V31I", "P37Q", "H45L", "N48H", "I61T", "I63T", "I84T"], "vpu": ["A5K", "F16L", "I20T", "K38R", "N80H"]}, "labels": {"aa": "INT: T122I, G193E, T218I, N254K, D256E, A265V; RT-p51: E6K, T7A, K39R, A158S, K281R, I292V, L303M, K395R; RT-p66: E6K, T7A, K39R, A158S, K281R, I292V, L303M, K395R, T459S, D460G, K476R, S491L, E527G; gp120: D4N, N71S, E78V, S104T, N105E, A106-, N108-, T110-, N132K, M133V, T135P, T141P, K143R, N157S, N158S, N161T, S162Q, I173L, V242I, P263S, T269S, E309K, V317I, I332V, N334K, N335K, S336P, G361A, T371-, N378K, N420T, M424I, N432D, N434G, S436N, T439I, I463L; gp41: S42G, D109S, E137D, N157S, N160S, I188V, N195S, R198M, Q199G, P213Q, G226S, L290F, N298S, A325I; nef: M20I, R22K, V43I, D54N, L76V, Y81F, F85M, Y120F, K182R, E201A; p17: K26R, L31M, S45A, I46L, S54T, V94I, Q117H, D121N; p2: -12P; p24: Q50G, T54M, V86A, R132K; p6: P1H, S25P, K27-, Q28-, E29-, R31-, R33K, E34Q, Q35D, -36V; p7: G4S; rev: G3E, G6R, R14Q, I16V, R44K, P67S, V108I, I109L; tat: R52Q, Q60P, N62S, Q78K; vif: K36N, E61Y, A62S, H80Y, I98V; vpr: D7N, V31I, P37Q, H45L, N48H, I61T, I63T, I84T; vpu: A5K, F16L, I20T, K38R, N80H"}}}, {"name": "AF286238", "node_attrs": {"div": 0.15628999999999998, "accession": "AF286238", "clade_membership": {"value": "A2"}, "country": {"value": "CD"}, "date": {"value": 1997.0}, "Strain_name": {"value": "97CDKTB48"}, "LANL_subtype": {"value": "A2"}}, "branch_attrs": {"mutations": {"nuc": ["A152T", "C153T", "C155T", "A157C", "G159-", "C160-", "G162-", "T163-", "G164-", "T165-", "A168-", "A169-", "A170-", "A171-", "C173-", "A177-", "G178-", "A180-", "A192-", "C193-", "A194-", "G195-", "G196-", "G197-", "A198-", "C199-", "T200-", "T201-", "G202-", "A203-", "A211G", "G212T", "T213-", "T214-", "-217A", "A222G", "G240A", "G278A", "G283A", "A286G", "A359G", "G365C", "T377A", "T479C", "T495G", "C496A", "G498A", "A499C", "A511G", "A516T", "A518T", "G524A", "C540G", "G595T", "A599T", "C666T", "A667G", "G712A", "-713G", "-714C", "-715A", "-716G", "A774G", "A776G", "A812T", "A818G", "C827T", "T852A", "G978T", "T992G", "A1046G", "A1050G", "C1060A", "C1103T", "G1192A", "C1280T", "G1313A", "A1340G", "A1404G", "G1424A", "A1455-", "A1456-", "T1457-", "G1469A", "G1486A", "C1541T", "A1691G", "G1713A", "C1714T", "A1715G", "A1719-", "A1720-", "C1721-", "T1722-", "T1723-", "T1724-", "G1725-", "G1726-", "A1727-", "A1728-", "T1729-", "G1730-", "G1731-", "G1732-", "G1733-", "C1756T", "-1773A", "-1774A", "A1781G", "-1783C", "-1784G", "-1785T", "A1786C", "T1787C", "C1825T", "A1837G", "A1857G", "C1865T", "G1916T", "A1918G", "C2011T", "A2014C", "T2087C", "A2131G", "C2149T", "T2158C", "A2230G", "A2300G", "C2301A", "T2383C", "A2389G", "C2420T", "T2453C", "A2470G", "C2499T", "G2519A", "T2597C", "G2602T", "A2611G", "A2616G", "A2629G", "G2682A", "A2707G", "G2725A", "A2755G", "T2779G", "A2809G", "A2925G", "G2951A", "C2960T", "A2985G", "C3049T", "A3099G", "A3107T", "A3165G", "T3181C", "T3225C", "G3226A", "C3252T", "T3266C", "A3309G", "T3310G", "A3387C", "C3475T", "T3497C", "C3500T", "G3505A", "T3567C", "G3616A", "A3619G", "G3631C", "A3739G", "C3742T", "C3756G", "G3766A", "G3816A", "A3874C", "T3889C", "T3904G", "C3905A", "A3906G", "T3943C", "G3989A", "C3995G", "A4051G", "A4076C", "C4085T", "A4148G", "G4176A", "C4181A", "C4288T", "A4303G", "A4315G", "G4419A", "T4426C", "C4501T", "A4538G", "G4549A", "T4656C", "T4679G", "G4684A", "A4693G", "G4696A", "T4697G", "G4764A", "G4765A", "A4860G", "A4861G", "T4868C", "A4951G", "T4976G", "G4982A", "C5006T", "A5038G", "A5136C", "T5147C", "C5182A", "G5188A", "T5194A", "G5246A", "T5264A", "A5269G", "A5285G", "C5314T", "G5359C", "A5397C", "C5398T", "T5424C", "G5448T", "T5451C", "T5551G", "C5552A", "A5556G", "A5557G", "A5564C", "A5581G", "T5604G", "T5612C", "T5626C", "A5644G", "T5654C", "C5658T", "A5673G", "A5680G", "A5699G", "G5700A", "A5703G", "A5734C", "C5736T", "A5737G", "T5772C", "T5791G", "C5792A", "A5793G", "A5794G", "C5795A", "C5797T", "T5799G", "G5800T", "T5801C", "G5802A", "G5803A", "G5805A", "G5809-", "G5810-", "G5811-", 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"A7583G", "A7589G", "C7595A", "C7596G", "C7597A", "T7630G", "G7631C", "G7640A", "C7642A", "A7669G", "A7680C", "C7692T", "C7699T", "G7701T", "A7711G", "A7800G", "T7888A", "T7912A", "T7948A", "G7977A", "G8050A", "C8112T", "C8123G", "T8153C", "T8171G", "G8184A", "A8196C", "T8209A", "A8212G", "T8213C", "T8290C", "T8321C", "T8332G", "-8366A", "G8368C", "C8386A", "G8388A", "G8396A", "A8406C", "T8456C", "C8458G", "G8461A", "T8495C", "G8537A", "C8546T", "A8573G", "C8574G", "A8576G", "T8595G", "T8597A", "T8640C", "A8656G", "C8688A", "A8696G", "A8739G", "T8740C", "A8744G", "A8746T", "T8813G", "A8819G", "C8831T", "T8843C", "A8859G", "T8860C", "G8873A", "A8912G", "A8922C", "G8923T", "C8928A", "T8935A", "T8972A", "G8977A", "C8979A", "T9074G", "T9126A", "A9135G"], "INT": ["R14K", "C43W"], "RT-p51": ["T69D", "T135I", "V142I", "E169D", "K174R", "I178M", "G196D", "K277R", "A286T", "K297R", "D335G", "T338S", "K357R", "M377T", "T386I", "Y405W", "K431T"], "RT-p66": ["T69D", "T135I", "V142I", "E169D", "K174R", "I178M", "G196D", "K277R", "A286T", "K297R", "D335G", "T338S", "K357R", "M377T", "T386I", "Y405W", "K431T", "S468P", "R512S", "S554C"], "gp120": ["T3A", "E21D", "D34A", "V37K", "E59A", "E78A", "-109T", "-111N", "-112T", "-113N", "-114S", "-115T", "-116E", "T134P", "K150E", "Q155L", "I156L", "N158R", "T160K", "N167S", "F195Y", "T208K", "K212S", "T220A", "E262K", "D293N", "I294N", "K307I", "D312A", "Q315K", "N335S", "-370G", "N379Y", "P389Q", "N434I", "S436E", "E438-", "T439-", "V468I", "K472E", "E479Q"], "gp41": ["S35T", "H53Q", "L54M", "K56R", "V72L", "T94A", "N96D", "P98R", "D109E", "E110Q", "D113K", "N126T", "T130I", "R133M", "K166R", "N195K", "G225E", "T270I", "L274V", "Y284H", "L290V", "R294Q", "N298T", "S302R", "F304L", "F340L"], "nef": ["S8R", "S9T", "A15E", "V16I", "T39R", "R40H", "P78A", "F85V", "K105R", "H116N", "I133A", "Y135F", "I173A", "R194L", "L198Q"], "p17": ["D14E", "S54E", "E55T", "Q59R", "I61F", "P69E", "Y87F", "H111C"], "p24": ["I15V", "S41T", "V83L", "H87Q", "T107A", "T110N", "R154K", "S225G"], "p6": ["A12M", "N14-", "L15-", "G16-", "M17-", "G18-", "E19-", "I21E", "T22I", "S23T", "-26L", "-30N", "-32E", "R33P", "E34S", "Q35T", "P49L"], "p7": ["M1I", "R7K"], "pro": ["K20R", "G40W"], "rev": ["L13I", "S34T", "A68T", "S92C", "I102T", "V108G", "E116D"], "tat": ["K7N", "K24N", "S59D", "S61G", "K63T", "I69V", "V80D"], "vif": ["R33K", "K36R", "G37E", "G60K", "K92G", "K122R", "S130R", "K151R"], "vpr": ["Q11P", "Y15H", "W54R", "I61V", "R85P"], "vpu": ["L2S", "I13V", "F16S", "I25V", "K31R", "I43L", "K44E", "E60D", "L61T", "S62E", "T63E", "V65S", "E66K", "G68-", "N69V", "L70G", "D71M", "F72G", "-73N", "-74L", "-75G", "-76F", "A79D", "N81D", "L82V"]}, "labels": {"aa": "INT: R14K, C43W; RT-p51: T69D, T135I, V142I, E169D, K174R, I178M, G196D, K277R, A286T, K297R, D335G, T338S, K357R, M377T, T386I, Y405W, K431T; RT-p66: T69D, T135I, V142I, E169D, K174R, I178M, G196D, K277R, A286T, K297R, D335G, T338S, K357R, M377T, T386I, Y405W, K431T, S468P, R512S, S554C; gp120: T3A, E21D, D34A, V37K, E59A, E78A, -109T, -111N, -112T, -113N, -114S, -115T, -116E, T134P, K150E, Q155L, I156L, N158R, T160K, N167S, F195Y, T208K, K212S, T220A, E262K, D293N, I294N, K307I, D312A, Q315K, N335S, -370G, N379Y, P389Q, N434I, S436E, E438-, T439-, V468I, K472E, E479Q; gp41: S35T, H53Q, L54M, K56R, V72L, T94A, N96D, P98R, D109E, E110Q, D113K, N126T, T130I, R133M, K166R, N195K, G225E, T270I, L274V, Y284H, L290V, R294Q, N298T, S302R, F304L, F340L; nef: S8R, S9T, A15E, V16I, T39R, R40H, P78A, F85V, K105R, H116N, I133A, Y135F, I173A, R194L, L198Q; p17: D14E, S54E, E55T, Q59R, I61F, P69E, Y87F, H111C; p24: I15V, S41T, V83L, H87Q, T107A, T110N, R154K, S225G; p6: A12M, N14-, L15-, G16-, M17-, G18-, E19-, I21E, T22I, S23T, -26L, -30N, -32E, R33P, E34S, Q35T, P49L; p7: M1I, R7K; pro: K20R, G40W; rev: L13I, S34T, A68T, S92C, I102T, V108G, E116D; tat: K7N, K24N, S59D, S61G, K63T, I69V, V80D; vif: R33K, K36R, G37E, G60K, K92G, K122R, S130R, K151R; vpr: Q11P, Y15H, W54R, I61V, R85P; vpu: L2S, I13V, F16S, I25V, K31R, I43L, K44E, E60D, L61T, S62E, T63E, V65S, E66K, G68-, N69V, L70G, D71M, F72G, -73N, -74L, -75G, -76F, A79D, N81D, L82V"}}}]}]}]}]}, {"name": "NODE_0000898", "node_attrs": {"div": 0.06616, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-161T", "T201C", "A518G", "A606C", "-716G", "-717G", "G771T", "A899G", "G978T", "A1115C", "C1175T", "T1385C", "A1657G", "-1783A", "A2311G", "G2462A", "A2463G", "T2521C", "A2612T", "C2638T", "C2671T", "C2740T", "C2968T", "C2975A", "C3207T", "A3208G", "C3303T", "A3385G", "A3409G", "A3769G", "A3877G", "G3907A", "T3991A", "A4076C", "A4078G", "A4243G", "T4276G", "A4937C", "G5179T", "C5227A", "G5246A", "A5248C", "A5444G", "A5619G", "C5627G", "A5652G", "T5686G", "T5687G", "A5704T", "A5706G", "-5861G", "-5866A", "A6037G", "A6044G", "-6212A", "A6333G", "-6340T", "T6838C", "-6985A", "G7883A", "G7977A", "G8208A", "C8223T", "A8241G", "T8268G", "G8424A", "C8666A", "G8864T", "C8867T", "A8870G", "G8915A"], "INT": ["I101L", "D167E"], "RT-p51": ["D123S", "P294T", "A371V"], "RT-p66": ["D123S", "P294T", "A371V"], "gp120": ["D4E", "E78T", "K307R"], "gp41": ["V194I", "T307I", "E313G"], "nef": ["E174D"], "p17": ["-127K"], "p24": ["A14S", "I15L", "E128D"], "vpr": ["E48N"], "vpu": ["A7C", "F27G", "I33L", "D44E", "W77-"]}, "labels": {"aa": "INT: I101L, D167E; RT-p51: D123S, P294T, A371V; RT-p66: D123S, P294T, A371V; gp120: D4E, E78T, K307R; gp41: V194I, T307I, E313G; nef: E174D; p17: -127K; p24: A14S, I15L, E128D; vpr: E48N; vpu: A7C, F27G, I33L, D44E, W77-"}}, "children": [{"name": "results/subtype_trees/A6.nwk", "node_attrs": {"div": 0.09767, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T10G", "-49T", "A301T", "-304A", "G428A", "T434C", "A470G", "A516C", "T571A", "A680C", "G683A", "G693A", "A697G", "-713C", "-714A", "C722T", "A776G", "T890C", "A938G", "A965T", "C974T", "T988C", "T992G", "A1002T", "C1013G", "G1139A", "G1184A", "A1277G", "T1296C", "T1329A", "G1474A", "A1492C", "G1586A", "A1595C", "C1598T", "T1749C", "C1756T", "G1760A", "-1785C", "-1786A", "T1792C", "G1794A", "A2038C", "T2101A", "A2127C", "G2173A", "A2212T", "A2293G", "A2329G", "A2350G", "C2356T", "C2488T", "C2615A", "A2665C", "G2710A", "A2727G", "A2728C", "C2828A", "A2829T", "A2839T", "C3067T", "A3071G", "A3124G", "A3167G", "A3204C", "A3293G", "T3310C", "T3368C", "C3391A", "T3436C", "C3469T", "C3499T", "C3610T", "T3644A", "C3653A", "G3667A", "G3679A", "C3773T", "A3808C", "G3834A", "A3952G", "C4123T", "G4145A", "C4146G", "A4159T", "A4195G", "G4459A", "A4522G", "G4622A", "A4693G", "T4697G", "T4776C", "G4856A", "A4865G", "A4967C", "T5003C", "T5027C", "C5062A", "A5134G", "G5143A", "T5197C", "A5215G", "A5272G", "A5355-", "T5357G", "G5359A", "G5361A", "G5376A", "G5382T", "G5385A", "C5412T", "G5448A", "C5539A", "G5556C", "G5599C", "T5602A", "C5611A", "G5627A", "G5639C", "C5651T", "A5655T", "T5659A", "G5712A", "G5775A", "T5778C", "T5781G", "A5788T", "C5789T", 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-106P, -111S, -114S, -115S, -116S, I126M, Q142K, P155S, N157D, N159-, I173M, S181T, E204N, A253S, K265N, N267T, T269I, N272G, Q300K, K312N, V317I, A318S, H324Y, N334K, S360T, T385-, Q412R, T436S, G443I, L466I; gp41: V2I, V7A, M54L, L118M, N133D, E137Q, R214E, L265S, L290V, L304I, A325V; nef: T23A, E28P, A32P, I43V, Q104R, F143Y, A151D, R178K, I194R; p17: I61L, T72S, F79Y, A120T, D121G; p24: V86A, H87Q, I91F, S200T; p6: S14N, S23-, P25S, -26L, L38P, V39S; p7: R3K, G4S, Q9P; rev: S8T, R14T, P67S, V108G; tat: E2D, Q54H, Q60H, G79R, S81Q; vif: K36R, R130S, T159R, H183R, S186N; vpr: E25D, I84L, D91N, A93S, G94S; vpu: C7Y, G11A, A15V, L18I, D58E, V65-, E66-, -69V, -79D, L82V", "clade": "A6"}}, "children": [{"name": "A6_NODE_0000001", "node_attrs": {"div": 0.10724, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["-305G", "G354A", "C362T", "T851C", "T852A", "A1017C", "C1040T", "T1166C", "T1182C", "C1220T", "A1367G", "G2428A", "A2965T", "A3755T", "G4156A", "A4407G", 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"RU_ERS_3734_2019"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G256-", "A278G", "G279A", "-280G", "A303G", "G361C", "T362A", "A374G", "G378A", "A417C", "C434T", "A461C", "T479A", "C496G", "C516A", "G519A", "A530G", "C539T", "C606A", "G608A", "C623T", "T641C", "A663G", "G667A", "C672G", "C679A", "G762A", "T763C", "G770A", "G785A", "C890T", "C947T", "C950T", "G956A", "T974C", "C1091T", "T1100C", "C1115T", "G1192A", "C1211A", "C1235T", "A1292C", "G1301A", "A1329G", "T1334C", "G1339A", "A1340G", "C1350A", "A1442T", "-1455A", "-1456A", "-1457C", "-1459T", "C1460A", "A1463G", "A1475G", "G1476A", "C1492A", "A1526G", "C1535T", "C1541T", "C1595G", "G1619A", "A1642G", "A1656C", "G1657A", "G1664A", "T1676C", "G1697A", "A1701T", "A1719G", "T1724G", "G1731A", "A1742G", "A1760C", "A1771G", "A1774G", "A1780G", "A1783C", "A1786G", "C1826G", "A1837G", "A1839G", "A1867G", "A1907G", "A1927G", "G1981A", "G1998A", "A2059G", "T2086C", "A2119G", "A2161G", "A2185G", "T2195C", 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"P106L", "-107K", "-109S", "S111L", "-112I", "S114E", "S115T", "S116T", "-117N", "-119T", "-120I", "-121L", "-122Y", "-123N", "-124Q", "K127R", "L137V", "K141R", "K142E", "K150R", "-158G", "-159Q", "N160D", "S171T", "V180I", "K201R", "K203H", "N204T", "K224R", "A238S", "E240G", "E241D", "V242I", "S246F", "T250S", "T255S", "P263T", "N265K", "T267N", "I269T", "G272A", "T275I", "I281M", "Y290F", "I298T", "H302Y", "N304T", "S306N", "R307K", "T308A", "E309S", "N311K", "K316R", "S318K", "K319-", "Q320-", "L321-", "R322-", "K323E", "Y324Q", "F325L", "-326G", "-328N", "K329T", "T330K", "I332L", "K334E", "N335G", "L341V", "G351R", "N358D", "G361N", "S365E", "W367L", "-368F", "N372D", "-373T", "-374N", "-375S", "-376T", "-377S", "R391K", "I396V", "N397R", "R416N", "N433T", "N434S", "S436H", "I443T", "D446N", "K462Q", "V468I", "K474R"], "gp41": ["A21V", "S23A", "I24V", "V72I", "N96T", "D109E", "D113K", "D121E", "K122R", "N125D", "D129E", "I130L", "K172R", "M176I", "T210I", "G215D", "P219L", "E224G", "G226D", "R231K", "D232T", "A243G", "S256C", "H258R", "R261K", "F263L", "I264V", "L288I", "V290G", "I301T", "I304V", "G322V", "V325F", "H331N", "F340L"], "nef": ["E18R", "I20M", "R21T", "R22Q", "A53P", "Y81F", "R104K", "Y135F", "P150T", "D151E", "E155K", "N161T", "D174E", "K178R", "R188S", "R196K"], "p1": ["K4R", "S9H"], "p17": ["S9T", "A15T", "K28Q", "E42D", "S54G", "L61M", "E62K", "K110E", "S111N", "Q113E", "T115N"], "p2": ["Q6H", "-10T", "-12I", "I13M"], "p24": ["V11T", "L15M", "R154K", "E180D", "E187D", "T200A", "R203K", "P207T"], "p6": ["T8S", "N14D", "F15L", "G18R", "I21M", "-23P", "P24S", "S25L", "L26N", "K27Q", "Q28E", "E29Q", "Q30R", "K31G", "D32R", "R33G", "E34P", "Q35R", "P38S", "S39I"], "p7": ["P9Q"], "pro": ["L10V", "K14R", "N37D", "C67Y"], "rev": ["E11Q", "V16I", "I18V", "Q24K", "R50N", "I55L", "S61G", "S67P", "Q74L", "H82S", "S103P", "S106H", "S107P", "I109V", "T114A"], "tat": ["N12K", "G57A", "P70Q", "P75S", "V80I", "P84S"], "vif": ["R4K", "A35T", "R36K", "R67K", "R90K", "K92R", "I98V", "E117D", "Q127R", "R132S", "A137T", "T157I", "T188L"], "vpr": ["Y15F", "P37L", "G41E", "I61V", "I63T", "L84Q", "R86-", "V89G"], "vpu": ["T2Q", "P3S", "A11S", "V14I", "I20V", "I25L", "K32R", "L34R", "-72G", "-73D", "-74Y", "-75V", "-76L", "-77L"]}, "labels": {"aa": "INT: D11E, S39N, M50I, L63V, A125T, I251L, D286N; RT-p51: K39N, E40D, V60I, S68G, I135T, S173A, T200I, E203D, M245N, D248E, K281R, E312N, V326I, D335E, F346L, K357R, K374R, V435A; RT-p66: K39N, E40D, V60I, S68G, I135T, S173A, T200I, E203D, M245N, D248E, K281R, E312N, V326I, D335E, F346L, K357R, K374R, V435A, L452Q, T470P, S491T, K524E, E527N; gp120: A2V, E4G, D19E, T57I, E64D, N71S, T104S, E105K, P106L, -107K, -109S, S111L, -112I, S114E, S115T, S116T, -117N, -119T, -120I, -121L, -122Y, -123N, -124Q, K127R, L137V, K141R, K142E, K150R, -158G, -159Q, N160D, S171T, V180I, K201R, K203H, N204T, K224R, A238S, E240G, E241D, V242I, S246F, T250S, T255S, P263T, N265K, T267N, I269T, G272A, T275I, I281M, Y290F, I298T, H302Y, N304T, S306N, R307K, T308A, E309S, N311K, K316R, S318K, K319-, Q320-, L321-, R322-, K323E, Y324Q, F325L, -326G, -328N, K329T, T330K, I332L, K334E, N335G, L341V, G351R, N358D, G361N, S365E, W367L, -368F, N372D, -373T, -374N, -375S, -376T, -377S, R391K, I396V, N397R, R416N, N433T, N434S, S436H, I443T, D446N, K462Q, V468I, K474R; gp41: A21V, S23A, I24V, V72I, N96T, D109E, D113K, D121E, K122R, N125D, D129E, I130L, K172R, M176I, T210I, G215D, P219L, E224G, G226D, R231K, D232T, A243G, S256C, H258R, R261K, F263L, I264V, L288I, V290G, I301T, I304V, G322V, V325F, H331N, F340L; nef: E18R, I20M, R21T, R22Q, A53P, Y81F, R104K, Y135F, P150T, D151E, E155K, N161T, D174E, K178R, R188S, R196K; p1: K4R, S9H; p17: S9T, A15T, K28Q, E42D, S54G, L61M, E62K, K110E, S111N, Q113E, T115N; p2: Q6H, -10T, -12I, I13M; p24: V11T, L15M, R154K, E180D, E187D, T200A, R203K, P207T; p6: T8S, N14D, F15L, G18R, I21M, -23P, P24S, S25L, L26N, K27Q, Q28E, E29Q, Q30R, K31G, D32R, R33G, E34P, Q35R, P38S, S39I; p7: P9Q; pro: L10V, K14R, N37D, C67Y; rev: E11Q, V16I, I18V, Q24K, R50N, I55L, S61G, S67P, Q74L, H82S, S103P, S106H, S107P, I109V, T114A; tat: N12K, G57A, P70Q, P75S, V80I, P84S; vif: R4K, A35T, R36K, R67K, R90K, K92R, I98V, E117D, Q127R, R132S, A137T, T157I, T188L; vpr: Y15F, P37L, G41E, I61V, I63T, L84Q, R86-, V89G; vpu: T2Q, P3S, A11S, V14I, I20V, I25L, K32R, L34R, -72G, -73D, -74Y, -75V, -76L, -77L"}}}, {"name": "A6_NODE_0000002", "node_attrs": {"div": 0.11238000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G495T", "A541G", "A2020G", "G2332A", "G2947A", "A3279G", "T3638G", "A3709G", "A4225G", "C4826A", "C4967A", "A5602G", "G5635A", "A5643G", "A6008G", "A6031C", "T6046A", "C6170A", "-6201G", "-6203A", "-6204T", "-6207C", "-6209A", "A6283G", "T6321C", "G6638A", "G6716A", "A6822C", "G6871A", "-6956A", "-6957A", "-6964T", "-6974A", "-6975C", "C7078T", "C7354T", "G7633T", "A8184G", "A8323C", "C8425G", "A8503C", "A8653G", "A8813G", "G8870T"], "RT-p51": ["K395R"], "RT-p66": ["K395R", "S515A"], "gp120": ["N52D", "E59D", "T104Q", "-112Y", "I156-", "D157-", "E262K", "H280R", "A288T", "-368N", "N378-"], "gp41": ["E110D", "Q294R"], "nef": ["P28R", "D54A", "E176D", "R196Q"], "p17": ["K69R"], "p7": ["S4G"], "tat": ["N23S"], "vif": ["F39L", "H80Q"], "vpu": ["V10I"]}, "labels": {"aa": "RT-p51: K395R; RT-p66: K395R, S515A; gp120: N52D, E59D, T104Q, -112Y, I156-, D157-, E262K, H280R, A288T, -368N, N378-; gp41: E110D, Q294R; nef: P28R, D54A, E176D, R196Q; p17: K69R; p7: S4G; tat: N23S; vif: F39L, H80Q; vpu: V10I"}}, "children": [{"name": "EF545108", "node_attrs": {"div": 0.14163, "accession": "EF545108", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2000.0}, "Strain_name": {"value": "RU00051"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A261-", "A412G", "A417C", "T479G", "G480A", "G518A", "A548G", "T575C", "T596C", "A604T", "G687A", "A699G", "G706A", "G712A", "C767T", "A774C", "A986C", "T1052A", "C1094T", "C1118T", "C1169T", "T1175C", "G1199A", "T1271G", "C1304T", "C1350G", "A1400G", "A1442C", "-1455A", "-1456A", "-1457T", "A1458-", "C1460-", "G1493C", "A1494C", "A1495C", "A1496G", "G1498A", "T1501G", "T1502A", "-1503A", "-1504T", "-1505T", "A1743G", "A1786C", "C1865T", "A1963G", "A2018G", "C2038T", "A2050C", "G2074A", "A2075C", "A2190G", "A2191G", "A2203C", "T2212G", "T2257C", "G2463A", "G2509A", "A2519G", "T2542G", "G2548A", "G2567T", "A2579T", "A2592G", "A2699G", "A2713G", "A2738G", "C2749T", "A2896C", "A2925G", "A2959G", "G2980A", "C3031A", "T3139C", "C3140T", "A3367G", "G3477A", "A3478G", "T3496C", "C3541T", "G3569A", "C3589T", "G3664A", "C3691T", "A3715G", "C3751T", "A3816G", "C3826T", "G3846A", "G3859A", "G3925A", "T3928C", "G3952A", "A3955C", "A3961G", "A4096G", "T4216C", "C4396T", "T4435C", "A4475G", "C4679G", "A4683G", "A4684G", "T4701C", "T4712C", "A4735G", "T4769C", "A4904G", "C4914T", "A4956C", "C4965G", "C4976A", "C5034T", "A5061G", "A5065G", "G5075A", "T5179G", "T5206C", "-5355A", "T5356A", "G5357T", "A5359G", "C5397T", "C5454T", "G5534A", "A5547G", "A5576C", "C5599G", "A5631C", "T5651C", "T5653C", "T5788G", "A5804G", "-5824A", "T5827G", "T5831C", "C5833T", "G5857A", "A5865G", "T5870C", "T5899C", "A5957C", "T6024C", "C6052T", "C6097T", "A6119C", "A6164C", "C6165A", "T6166A", "A6169G", "A6174G", "A6179G", "C6180T", "T6181C", "T6187-", "A6188-", "A6191T", "C6193T", "G6195A", "-6205G", "A6206T", "-6208T", "-6210A", "-6211C", "-6213G", "-6216G", "-6217C", "G6218A", "-6219G", "-6220G", "-6221T", "-6223T", "A6225G", "C6263T", "A6273G", "A6279G", "T6287C", "G6323A", "A6329G", "T6331G", "A6335G", "T6337A", "A6338C", "A6339C", "T6340G", "T6382C", "A6394G", "A6395G", "C6396T", "G6457C", "G6458C", "T6460A", "A6464G", "A6489G", "A6573G", "G6575A", "G6577T", "T6582C", "G6611A", "A6636G", "A6684C", "T6747C", "A6785G", "A6786G", "T6787A", "A6791G", "T6794A", "T6795C", "C6797G", "A6800G", "A6806C", "A6818C", "G6819A", "A6823T", "-6830C", "-6831C", "-6832A", "-6835C", "A6836-", "A6837-", "C6838-", "T6849G", "C6898T", "A6936G", "G6948A", "A6950G", "T6953A", "G6955C", "-6967A", "-6968A", "-6969A", "-6970C", "-6971C", "-6972G", "-6973C", "-6976A", "C6982-", "A6983-", "A6985-", "A6986-", "A6987-", "T6988-", "A6989-", "G6990-", "C6991-", "A6992-", "C6993-", "A7007C", "C7014T", "A7036G", "G7054A", "A7063G", "A7066G", "G7089A", "G7094A", "A7096C", "T7147G", "G7152A", "C7153A", "T7159C", "A7161G", "-7166G", "-7167A", "-7168G", "-7169A", "-7170C", "-7171C", "A7300G", "G7375A", "T7403C", "G7417A", "A7471G", "C7579A", "G7594A", "A7629G", "C7645T", "A7668G", "A7676C", "C7684T", "C7712A", "A7741G", "T7805C", "A7820C", "A7880G", "A7975C", "A7977G", "G7995A", "A8069C", "G8070T", "C8097T", "G8105A", "G8143A", "T8167C", "A8196G", "A8213G", "G8328A", "T8337A", "T8366C", "G8479A", "G8554A", "G8561A", "G8654A", "A8657G", "T8685C", "A8794T", "A8829T", "A8874G", "G8882A", "A8938C", "A8944G", "A8969G", "-8993T", "G8997A", "A8998C", "C8999T", "T9002C", "A9005G", "T9028A"], "INT": ["K14R", "S24N", "M50I", "I234V"], "RT-p51": ["K32R", "E36D", "I142V", "A158S", "S162C", "K166R", "I202V", "T215A", "K277R"], "RT-p66": ["K32R", "E36D", "I142V", "A158S", "S162C", "K166R", "I202V", "T215A", "K277R", "R461K", "E492K"], "gp120": ["E4G", "T35P", "K89Q", "P106I", "-107S", "-109V", "S111N", "-117S", "-118R", "-119Y", "-124G", "K140R", "K142R", "Y145H", "N160-", "N161T", "T181V", "K201N", "D202Q", "N204D", "K212R", "E240G", "E241N", "M243T", "S253T", "N261S", "K277T", "I298T", "N311G", "T313A", "L314T", "Q315E", "K316E", "S318R", "R322Q", "K323T", "-326P", "I332S", "S365N", "T366A", "W367S", "-373R", "-374T", "-384D", "-385P", "T387I", "R412K", "V414I", "N433K", "S436G", "N437T"], "gp41": ["D109S", "K122R", "N125H", "Q137K", "I173L", "I193V", "E224D", "E225G", "R231K", "S256L", "S265L", "A268T", "N298S", "I304V", "R342K", "L345Q"], "nef": ["R46N", "R71K", "Y115H", "S163C", "K178G", "H199P", "E201G"], "p17": ["K26R", "K28Q", "G49S", "Q90L", "A118T", "T122A", "S124N", "S126N"], "p2": ["Q6H", "-10T"], "p24": ["P207A"], "p6": ["T22A"], "p7": ["K10P", "R11K", "I12R", "-13I"], "pro": ["T74A", "I93L"], "rev": ["D7N", "E11G", "I21L", "Q74P", "S86N", "G99R", "S107P"], "tat": ["R53K", "N67T"], "vif": ["K33G", "K50R", "H110Y", "E117D", "I124L", "Q127E", "S130R", "R159G", "K160R"], "vpr": ["D25E", "L84N"], "vpu": ["V15A", "F16L", "L61V", "-72G", "-73N", "-74D", "-75A", "-76F", "-77L"]}, "labels": {"aa": "INT: K14R, S24N, M50I, I234V; RT-p51: K32R, E36D, I142V, A158S, S162C, K166R, I202V, T215A, K277R; RT-p66: K32R, E36D, I142V, A158S, S162C, K166R, I202V, T215A, K277R, R461K, E492K; gp120: E4G, T35P, K89Q, P106I, -107S, -109V, S111N, -117S, -118R, -119Y, -124G, K140R, K142R, Y145H, N160-, N161T, T181V, K201N, D202Q, N204D, K212R, E240G, E241N, M243T, S253T, N261S, K277T, I298T, N311G, T313A, L314T, Q315E, K316E, S318R, R322Q, K323T, -326P, I332S, S365N, T366A, W367S, -373R, -374T, -384D, -385P, T387I, R412K, V414I, N433K, S436G, N437T; gp41: D109S, K122R, N125H, Q137K, I173L, I193V, E224D, E225G, R231K, S256L, S265L, A268T, N298S, I304V, R342K, L345Q; nef: R46N, R71K, Y115H, S163C, K178G, H199P, E201G; p17: K26R, K28Q, G49S, Q90L, A118T, T122A, S124N, S126N; p2: Q6H, -10T; p24: P207A; p6: T22A; p7: K10P, R11K, I12R, -13I; pro: T74A, I93L; rev: D7N, E11G, I21L, Q74P, S86N, G99R, S107P; tat: R53K, N67T; vif: K33G, K50R, H110Y, E117D, I124L, Q127E, S130R, R159G, K160R; vpr: D25E, L84N; vpu: V15A, F16L, L61V, -72G, -73N, -74D, -75A, -76F, -77L"}}}, {"name": "EU861977", "node_attrs": {"div": 0.14079, "accession": "EU861977", "clade_membership": {"value": "A6"}, "country": {"value": "IT"}, "date": {"value": 2002.0}, "Strain_name": {"value": "60000"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C23A", "-167A", "-280G", "T306A", "C476T", "T479C", "C507A", "A508G", "A520G", "C531T", "C558T", "A692G", "C710A", "A714C", "A774T", "G776A", "A866G", "C988T", "T1004A", "G1016A", "G1078C", "C1103T", "C1115T", "A1265C", "C1280T", "T1335C", "G1355A", "T1444C", "T1451G", "-1459A", "G1487A", "C1613T", "A1719G", "T1722C", "G1725T", "C1744A", "T1791G", "G1835A", "A1841G", "A1900G", "T1954C", "C2127A", "A2179G", "C2199A", "A2210G", "G2215A", "C2263T", "G2431A", "A2563C", "A2615C", "A2626C", "A2695G", "T2716C", "A2872G", "T2899C", "G2914A", "A2915T", "T2917A", "G2921A", "C2944T", "T2965C", "G2972A", "G2984A", "G3010A", "A3165G", "G3221A", "C3252T", "A3280G", "A3382G", "T3497C", "C3542T", "A3562G", "T3577C", "G3631A", "A3637G", "A3644G", "A3653C", "C3668T", "A3676G", "A3685G", "T3779C", "A3805G", "A3866G", "G3877A", "A3901G", "C3908T", "C4006A", "C4042T", "A4112G", "G4263T", "G4267A", "A4270G", "A4303C", "T4412C", "A4498C", "G4642A", "G4673A", "G4677A", "T4703G", "A4721C", "G4802A", "C4911T", "C4937A", "A4968T", "G4981A", "A4994T", "G4995A", "C5003T", "G5036A", "A5093G", "A5143G", "C5180A", "G5215A", "C5221T", "A5305G", "-5355T", "C5556G", "G5558A", "G5561A", "G5589C", "C5612G", "A5613C", "T5617C", "G5620C", "A5627G", "G5652A", "T5653G", "T5654G", "A5702G", "A5711G", "G5725A", "C5795A", "A5800G", "-5812G", "T5831A", "C5869T", "G5872A", "T6025G", "G6079A", "T6160C", "T6163C", "G6167A", "A6169C", "T6171G", "C6175T", "A6176G", "T6178C", "C6183G", "A6185T", "-6189A", "G6198A", "C6202T", "-6205A", "-6208A", "-6210C", "-6211A", "A6212G", "-6213C", "C6214A", "-6216T", "-6217G", "-6219C", "-6221A", "-6223G", "G6253A", "A6276C", "T6317C", "T6322A", "A6327G", "C6347T", "G6403A", "C6487T", "A6489C", "G6490A", "A6532G", "A6581G", "A6635G", "A6636C", "C6661T", "A6664G", "G6668A", "G6669A", "C6670T", "A6679G", "T6688C", "A6691C", "G6732A", "C6758T", "A6764T", "A6765T", "G6771A", "C6812A", "A6818G", "A6821G", "-6835A", "A6855G", "A6936C", "G6940A", "C6952A", "C6958T", "A6959G", "T6961A", "G6962A", "G6963A", "C6966A", "-6967C", "-6976T", "-6977A", "-6978T", "-6979C", "-6980A", "-6981G", "-6984C", "A6992G", "-6994A", "-6995G", "-6996A", "-6997G", "-6998G", "-6999A", "-7000A", "-7001A", "-7002A", "-7003T", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "A7021G", "G7072A", "C7087T", "A7088G", "G7089C", "T7095A", "A7100G", "G7101A", "A7126G", "A7149G", "A7155T", "A7181G", "T7182G", "A7183C", "T7243A", "A7255G", "G7315A", "A7373C", "T7462G", "A7590G", "T7615C", "G7627T", "A7628G", "G7640A", "G7688A", "G7700A", "A7722G", "T7762C", "T7796A", "A7832G", "A7936G", "C8071T", "G8085A", "A8093G", "A8130G", "G8158A", "G8170A", "T8182C", "A8188G", "A8204G", "T8206A", "A8208G", "T8210C", "A8263G", "A8275G", "C8342G", "A8402T", "G8453A", "T8480G", "T8483C", "A8486C", "G8487T", "G8490A", "G8502A", "C8507T", "A8531T", "A8540C", "C8640T", "A8666G", "C8699A", "T8720A", "G8738A", "G8774A", "G8796A", "A8815G", "G8875A", "A8918G", "C8934A", "G8955A", "A8970G", "G8971C"], "INT": ["I31V", "I113V", "G163V"], "RT-p51": ["T11K", "T35K", "K174Q", "E177D", "I274L", "V276I", "V293I", "E297K", "E312D", "K357R", "A376T", "T386I"], "RT-p66": ["T11K", "T35K", "K174Q", "E177D", "I274L", "V276I", "V293I", "E297K", "E312D", "K357R", "A376T", "T386I", "S468P", "H483Y", "I517V", "K520Q"], "gp120": ["T57M", "-107N", "-109D", "S114N", "-123K", "-124E", "M133I", "K141T", "S155P", "N160T", "N161G", "K212T", "M243V", "S253A", "N261A", "G272N", "G293D", "D294I", "H302Y", "N304F", "S306N", "Q320K", "R322G", "K323A", "-326K", "K334R", "G361A", "N369E", "G370S", "-373S", "-374A", "-375E", "-376E", "-377N", "M406I", "R412A", "R416E", "N432G", "N433G", "N435S", "N437I", "I443G"], "gp41": ["I24L", "H53Q", "N96S", "Q108H", "D113N", "D129N", "D133N", "N140S", "S165T", "I177V", "R261K", "I264V", "L277S", "I301V", "N302S"], "nef": ["A49S", "A50T", "A54T", "E63D", "N126K", "E152K", "E158G", "L198M", "D205N"], "p17": ["Q58R", "E62G", "P66S", "L75F", "S125R", "K127Q"], "p2": ["V7A", "Q8T", "N11-"], "p24": ["A86V", "F91L", "G116A", "E180D"], "p6": ["N14D", "F15L", "G16W", "T22N", "P36H", "S39A"], "pro": ["V13I", "I15V"], "rev": ["T14R", "A15T", "V16I", "S25T", "K30E", "H82R", "V104M", "G108S", "S112P", "T114A"], "tat": ["H60Q", "S61N", "S62N", "K71N", "Q76R"], "vif": ["R19K", "M29I", "V31I", "E45D", "I128L", "R132K", "Q136H", "A137T", "N186S"], "vpr": ["L26I", "R85Q"], "vpu": ["T2S", "E5Q", "Y7C", "F16G", "K32R", "K35R", "D40N", "T63K", "-65V", "-66E", "M67V", "V69-", "D79Y", "N80D", "N81L", "V82L"]}, "labels": {"aa": "INT: I31V, I113V, G163V; RT-p51: T11K, T35K, K174Q, E177D, I274L, V276I, V293I, E297K, E312D, K357R, A376T, T386I; RT-p66: T11K, T35K, K174Q, E177D, I274L, V276I, V293I, E297K, E312D, K357R, A376T, T386I, S468P, H483Y, I517V, K520Q; gp120: T57M, -107N, -109D, S114N, -123K, -124E, M133I, K141T, S155P, N160T, N161G, K212T, M243V, S253A, N261A, G272N, G293D, D294I, H302Y, N304F, S306N, Q320K, R322G, K323A, -326K, K334R, G361A, N369E, G370S, -373S, -374A, -375E, -376E, -377N, M406I, R412A, R416E, N432G, N433G, N435S, N437I, I443G; gp41: I24L, H53Q, N96S, Q108H, D113N, D129N, D133N, N140S, S165T, I177V, R261K, I264V, L277S, I301V, N302S; nef: A49S, A50T, A54T, E63D, N126K, E152K, E158G, L198M, D205N; p17: Q58R, E62G, P66S, L75F, S125R, K127Q; p2: V7A, Q8T, N11-; p24: A86V, F91L, G116A, E180D; p6: N14D, F15L, G16W, T22N, P36H, S39A; pro: V13I, I15V; rev: T14R, A15T, V16I, S25T, K30E, H82R, V104M, G108S, S112P, T114A; tat: H60Q, S61N, S62N, K71N, Q76R; vif: R19K, M29I, V31I, E45D, I128L, R132K, Q136H, A137T, N186S; vpr: L26I, R85Q; vpu: T2S, E5Q, Y7C, F16G, K32R, K35R, D40N, T63K, -65V, -66E, M67V, V69-, D79Y, N80D, N81L, V82L"}}}]}]}, {"name": "A6_NODE_0000003", "node_attrs": {"div": 0.10245000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A159G", "T161G", "G386A", "G534A", "T614G", "G615A", "T734C", "C1247T", "G1313A", "G1328A", "G1476A", "C1478T", "G1493A", "A1642G", "G1661A", "A1701T", "T1754C", "G1766A", "A2182G", "A2305G", "A2380C", "T2467C", "T2494A", "G2686A", "C2930T", "A2962G", "G3016A", "C3031A", "G3094A", "A3382G", "C3449A", "T3497C", "G3595A", "A3715G", "C3756A", "C3922T", "A3934G", "C3995A", "G3997A", "A4112G", "A4130C", "G4131C", "A4175G", "A4231G", "C4471T", "G4539A", "T4540C", "G4549A", "A4775G", "G4786A", "A4860G", "A4895G", "C4914T", "G4986A", "A4988C", "A4993C", "A5061G", "T5209A", "A5448T", "G5493A", "C5496A", "A5544C", "C5584T", "G5619A", "C5641T", "-5824A", "T5968C", "G6079A", "A6103C", "-6189G", "A6192G", "T6250C", "G6253A", "G6274A", "A6277G", "A6283T", "T6382C", "A6462C", "C6612G", "T6652C", "A6684C", "A6718C", "T6772C", "T6961-", "-6995G", "-6996A", "-6998G", "-6999C", "-7002A", "C7018A", "A7096T", "T7130C", "T7217C", "G7269A", "A7540G", "A7669G", "A7673G", "T7921G", "A7937C", "G7970A", "C8080A", "A8130G", "T8159G", "A8196G", "T8210C", "C8291T", "T8292G", "C8294A", "A8305G", "T8321G", "T8322C", "T8337A", "G8385C", "A8459G", "C8741T", "G8971C"], "INT": ["L74I", "I113V", "S119P", "N134D", "S255N"], "RT-p66": ["L452T", "S468P", "S554N"], "gp120": ["-112S", "M133I", "K143N", "A172T", "K203P", "K277T", "G361D"], "gp41": ["I124V", "D129N", "F206L", "N212H", "E223K", "L277S", "W286G", "N298S", "L330C", "H331N", "F340A", "L345Q"], "nef": ["E15Q"], "p1": ["K4R"], "p17": ["A67T", "D93E", "V94I"], "p24": ["L15M"], "p6": ["T8S", "P36H"], "rev": ["E10A", "K30T", "R41Q", "L78I", "V104G"], "tat": ["K24N", "N40K", "P70S", "Q76H", "V80N"], "vif": ["R67K", "H110Y", "Q127H", "E134N", "R159E"], "vpr": ["R85Q"]}, "labels": {"aa": "INT: L74I, I113V, S119P, N134D, S255N; RT-p66: L452T, S468P, S554N; gp120: -112S, M133I, K143N, A172T, K203P, K277T, G361D; gp41: I124V, D129N, F206L, N212H, E223K, L277S, W286G, N298S, L330C, H331N, F340A, L345Q; nef: E15Q; p1: K4R; p17: A67T, D93E, V94I; p24: L15M; p6: T8S, P36H; rev: E10A, K30T, R41Q, L78I, V104G; tat: K24N, N40K, P70S, Q76H, V80N; vif: R67K, H110Y, Q127H, E134N, R159E; vpr: R85Q"}}, "children": [{"name": "KU749403", "node_attrs": {"div": 0.14012000000000002, "accession": "KU749403", "clade_membership": {"value": "A6"}, "country": {"value": "UA"}, "date": {"value": 2012.0}, "Strain_name": {"value": "DEMA112UA024"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A16G", "A21G", "C96T", "G112A", "T200C", "G202T", "T214A", "-215A", "-216C", "-217A", "A302G", "A304T", "C362T", "A398G", "C456T", "G495T", "G518A", "C558G", "C606A", "A619G", "T635A", "C688T", "A692G", "A693G", "C830T", "T852A", "G906A", "G908A", "T978A", "T979C", "C1008G", "G1016A", "A1028T", "A1076T", "G1109A", "C1115G", "T1271G", "A1292T", "G1301A", "A1329T", "G1339A", "A1412G", "T1427C", "G1430A", "G1443A", "A1445G", "-1455A", "-1456A", "-1457C", "-1459T", "C1460A", "A1463G", "G1487A", "A1532G", "C1541T", "T1646C", "A1691G", "C1744T", "A1772G", "A1786G", "A1794G", "C1826A", "A1839G", "G1845A", "C1985G", "T2062C", "C2149G", "C2199A", "A2210G", "G2215A", "G2248A", "G2273A", "A2286G", "G2287A", "G2332A", "G2350A", "A2395G", "A2422G", "T2453C", "G2456C", "A2461G", "A2569C", "C2596T", "A2641G", "A2693G", "T2708C", "T2779G", "A2828G", "G2914A", "C2942A", "G3037A", 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"C8789A", "G8793A", "T8795G", "G8807A", "G8816A", "A8834G", "A8873G", "G8875A", "T8903C", "C8928T", "G8929A", "A8930C", "C8934A", "A8970C", "C8971T", "T9014C", "T9017-", "T9018-", "C9023T", "T9073C"], "INT": ["V72I", "S195T"], "RT-p51": ["T35K", "K39D", "V60I", "K64R", "D121H", "T200A", "M245V", "L283I", "V375I", "E404D", "E432D", "V435M"], "RT-p66": ["T35K", "K39D", "V60I", "K64R", "D121H", "T200A", "M245V", "L283I", "V375I", "E404D", "E432D", "V435M", "T450N", "R512S", "E514D", "N554Q"], "gp120": ["T3A", "E4D", "N5M", "L6-", "E21K", "Y33H", "N57S", "N64D", "N71D", "Q86E", "K93Q", "E105D", "-107K", "-109S", "S111I", "-117N", "-118S", "F131Y", "N132Y", "Y145H", "I153V", "I156L", "D157G", "N158T", "-159S", "N167H", "M173I", "T174K", "N204M", "V227A", "E240K", "E247Q", "N261Q", "R270K", "N273T", "S278R", "I281H", "-282I", "Q287R", "A291T", "T292H", "D297N", "I298P", "K300I", "R307S", "T308A", "E309K", "N312K", "K316G", "S318R", "K319R", "K323N", "-326T", "K334R", "L341V", "N369-", "T371-", "N378-", "-384D", "-385T", "I396V", "N397R", "R412G", "N432A", "N435S", "S436T", "I443L", "V461I", "K462Q", "I463V", "K472P", "E481Q"], "gp41": ["K90R", "N96A", "Q108Y", "D109N", "E110D", "D113N", "S125N", "N129H", "D148E", "F162L", "K172R", "I182V", "L204V", "G215E", "I222T", "I235T", "A245V", "S265L", "A310V"], "nef": ["S9N", "I10S", "V11-", "G12-", "P14A", "V16I", "I20M", "P24E", "S46R", "E63D", "R71K", "Y81F", "G83A", "F85V", "I133T", "Y135F", "L137I", "Y143F", "D149E", "D151K", "R196Y", "L198M"], "p17": ["A54S", "L75V", "K95R", "A118V", "T120A"], "p2": ["V7M", "-10T", "-12I", "I13M"], "p24": ["S41T", "V59I", "L83T", "P93A", "D128E", "E187D", "T200S", "R203K"], "p6": ["T22I", "H36R"], "pro": ["L10I", "K14R", "G16E", "L63V"], "rev": ["A15T", "D53H", "I109V", "S112A"], "tat": ["N12K", "S61N", "S87P"], "vif": ["F39C", "R41K", "H48N", "R63K", "I87L", "K92E", "R93M", "Q136S", "T155S", "G182D"], "vpr": ["R36N", "P37T", "H40Q", "I63T"], "vpu": ["T2S", "V10I", "K32R", "L34R", "-72G", "-73N", "-74D", "-75A", "-76F", "-77V", "N80D"]}, "labels": {"aa": "INT: V72I, S195T; RT-p51: T35K, K39D, V60I, K64R, D121H, T200A, M245V, L283I, V375I, E404D, E432D, V435M; RT-p66: T35K, K39D, V60I, K64R, D121H, T200A, M245V, L283I, V375I, E404D, E432D, V435M, T450N, R512S, E514D, N554Q; gp120: T3A, E4D, N5M, L6-, E21K, Y33H, N57S, N64D, N71D, Q86E, K93Q, E105D, -107K, -109S, S111I, -117N, -118S, F131Y, N132Y, Y145H, I153V, I156L, D157G, N158T, -159S, N167H, M173I, T174K, N204M, V227A, E240K, E247Q, N261Q, R270K, N273T, S278R, I281H, -282I, Q287R, A291T, T292H, D297N, I298P, K300I, R307S, T308A, E309K, N312K, K316G, S318R, K319R, K323N, -326T, K334R, L341V, N369-, T371-, N378-, -384D, -385T, I396V, N397R, R412G, N432A, N435S, S436T, I443L, V461I, K462Q, I463V, K472P, E481Q; gp41: K90R, N96A, Q108Y, D109N, E110D, D113N, S125N, N129H, D148E, F162L, K172R, I182V, L204V, G215E, I222T, I235T, A245V, S265L, A310V; nef: S9N, I10S, V11-, G12-, P14A, V16I, I20M, P24E, S46R, E63D, R71K, Y81F, G83A, F85V, I133T, Y135F, L137I, Y143F, D149E, D151K, R196Y, L198M; p17: A54S, L75V, K95R, A118V, T120A; p2: V7M, -10T, -12I, I13M; p24: S41T, V59I, L83T, P93A, D128E, E187D, T200S, R203K; p6: T22I, H36R; pro: L10I, K14R, G16E, L63V; rev: A15T, D53H, I109V, S112A; tat: N12K, S61N, S87P; vif: F39C, R41K, H48N, R63K, I87L, K92E, R93M, Q136S, T155S, G182D; vpr: R36N, P37T, H40Q, I63T; vpu: T2S, V10I, K32R, L34R, -72G, -73N, -74D, -75A, -76F, -77V, N80D"}}}, {"name": "A6_NODE_0000004", "node_attrs": {"div": 0.10733000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G762A", "A860G", "A866G", "A1151G", "G1673A", "G1835A", "A2203C", "T2212G", "G2539A", "C2613T", "A2974G", "A3136G", "A3684G", "A3768G", "T3784A", "T4959G", "A5065G", "-5355G", "G5482A", "C5958A", "G6044A", "-6177G", "T6178C", "C6183G", "A6186C", "A6636C", "A6734G", "A6780C", "A6810C", "A6881G", "-6984C", "-6994A", "-6997G", "-7000C", "C7006A", "T7095A", "A7533G", "C7712A", "T8172G", "G8276T", "A8570G", "A8597C", "A8970G"], "INT": ["D3E"], "RT-p51": ["E36D"], "RT-p66": ["E36D", "K530R", "K558R"], "gp120": ["T35K", "N160S", "N261T", "H280R", "E309A", "K319T", "-328N", "I343V", "-370S", "-380T", "V414N"], "gp41": ["Q137K", "V290G", "V325I"], "nef": ["R104K"], "pro": ["V13I"], "tat": ["N23S"], "vif": ["L125V", "K160R"], "vpr": ["L84V"], "vpu": ["-65M", "-66E", "M67V"]}, "labels": {"aa": "INT: D3E; RT-p51: E36D; RT-p66: E36D, K530R, K558R; gp120: T35K, N160S, N261T, H280R, E309A, K319T, -328N, I343V, -370S, -380T, V414N; gp41: Q137K, V290G, V325I; nef: R104K; pro: V13I; tat: N23S; vif: L125V, K160R; vpr: L84V; vpu: -65M, -66E, M67V"}}, "children": [{"name": "A6_NODE_0000005", "node_attrs": {"div": 0.11012000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A1719G", "G2215A", "T2449C", "C2728A", "A3217G", "A4861G", "T4969A", "C4988T", "G5842A", "G5881A", "A6085T", "G6336A", "C6454T", "A6776G", "C6938T", "-6967T", "-6980G", "G7102A", "A7107T", "T7147A", "C7153T", "A7373C", "T7929C", "T8047C", "G8329A", "G8388A", "A8424C", "G8522A", "C8676T", "-9109G"], "gp120": ["T308A", "D361N", "-381E", "-383S", "-384E", "E418V"], "gp41": ["I24L", "K77R", "L209P"], "nef": ["V16I"], "p6": ["N14D"], "rev": ["S67P"], "vif": ["K92G", "E117D", "I128K"]}, "labels": {"aa": "gp120: T308A, D361N, -381E, -383S, -384E, E418V; gp41: I24L, K77R, L209P; nef: V16I; p6: N14D; rev: S67P; vif: K92G, E117D, I128K"}}, "children": [{"name": "MT369952", "node_attrs": {"div": 0.14071, "accession": "MT369952", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2016.0}, "Strain_name": {"value": "RU_ERS_1033_2016"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A261G", "T301A", "A302T", "A303-", "A304-", "G317A", "G354A", "A386G", "A388G", "C435T", "T473C", "C516A", "T525C", "A527C", "C531T", "C539T", "A571T", "C606A", "G614A", "A618C", "A653G", "C707T", "G776T", "A815G", "G866A", "G899A", "C917T", "A968G", "T978A", "T979C", "G992A", "G1013A", "A1074G", "C1091T", "A1097G", "A1101G", "C1115A", "A1123G", "G1192A", "A1259G", "T1316C", "T1409C", "T1421G", "-1459G", "G1553A", "A1661G", "A1709T", "G1731A", "A1772G", "C1825A", "C1831T", "T1854A", "G1968A", "A2007G", "A2020G", "T2053C", "T2080C", "A2222G", "G2224A", "G2273A", "G2294A", "G2311A", "G2359T", "A2410G", "T2440C", "A2498G", "G2509A", "T2613C", "T2708C", "T2737A", "T2770C", "A2995G", "T2996C", "G3019A", "T3068A", "A3099G", "A3259G", "T3319C", "G3398C", "A3400G", "G3439A", "G3442A", "T3450C", "G3477A", "T3496C", "C3497T", "C3500A", "A3521C", "A3607G", "A3637C", "G3787A", "A3834G", "T3865C", "G3884A", "A4293G", "A4528C", "C4534T", "A4622G", "A4650C", "G4673A", "T4701G", "G4726C", "G4727A", "A4735G", "G4737T", "G4765A", "C4776A", "A4806G", "C4807A", "G4859A", "A4862G", "G4887A", "A4956T", "A4958G", "G4959T", "C4992A", "C5019T", "G5059A", "G5065A", "G5075A", "T5179A", "C5180A", "T5194A", "T5206C", "C5351A", "T5484G", "C5544A", "A5547G", "C5578T", "T5584C", "A5613T", "G5652A", "A5656T", "A5680C", "G5700A", "T5704A", "G5706A", "C5707A", "T5708G", "T5731C", "G5739A", "C5797A", "C5826T", "G5851A", "G5861A", "A5962G", "A5965G", "T6025G", "T6026A", "G6029A", "T6046C", "A6092G", "T6154C", "C6180A", "T6184C", "A6191T", "G6192C", "C6193T", "G6195A", "T6196C", "-6201G", "-6203A", "-6204G", "-6205T", "-6207G", "-6208T", "-6209G", "-6210T", "-6211T", "-6213A", "-6214C", "-6215A", "-6216G", "-6217T", "-6218T", "-6219G", "-6220G", "-6221A", "-6222C", "-6223T", "A6228T", "A6234G", "A6276G", "A6329G", "A6330G", "A6338C", "G6339A", "T6340G", "G6368A", "C6416T", "T6445C", "G6457T", "T6493C", "G6575A", "A6589G", "G6611A", "C6636A", "T6637A", "G6640T", "A6659G", "A6727C", "A6754T", "G6779A", "C6780A", "C6790G", "A6799G", "A6800G", "G6802C", "G6819A", "A6821C", "-6833A", "-6834A", "-6835T", "G6856A", "C6925T", "G6935A", "A6950T", "A6959-", "A6960-", "-6968G", "-6969G", "-6970A", "-6971A", "-6972A", "-6973T", "-6974A", "-6975G", "-6976C", "-6977A", "-6978G", "-6979T", "-6981A", "A7002G", "A7040G", "T7096A", "A7151G", "C7156T", "A7161G", "G7162T", "C7164A", "-7166G", "-7167A", "-7168G", "-7169A", "-7170C", "-7171C", "G7199A", "G7225A", "A7238G", "G7276A", "C7328A", "G7459A", "A7573G", "A7617G", "C7625G", "T7630G", "G7633C", "G7657A", "G7673A", "G7688A", "A7689G", "T7757C", "G7759T", "A7782G", "T7823G", "G7831A", "C7926T", "C7937A", "G7947A", "A7970G", "G8098A", "G8134C", "G8172C", "G8180A", "A8195G", "T8203C", "A8213C", "C8232T", "T8276A", "G8305A", "C8311T", "A8396C", "A8447G", "A8468G", "A8474C", "C8507T", "A8536G", "G8537A", "G8555A", "G8558A", "A8584T", "G8590C", "A8656G", "T8687C", "A8739G", "C8768T", "C8789T", "A8797C", "A8829T", "C8840T", "A8852G", "G8875A", "G8882A", "A8917C", "G8923T", "C8934A", "T8935A", "C8951T", "G8977A", "A8978C", "C8979A", "A8980G", "T9019G", "A9026-", "G9027A", "T9028G", "G9030T", "A9106G"], "INT": ["K20R", "V37I", "K173R", "S283G"], "RT-p51": ["K43E", "V60I", "D67N", "W88C", "I135V", "S211R", "F214L", "L325I", "D335G", "V435L"], "RT-p66": ["K43E", "V60I", "D67N", "W88C", "I135V", "S211R", "F214L", "L325I", "D335G", "V435L", "R461K", "P468S", "L469I", "K476Q", "E514D"], "gp120": ["N57M", "L58M", "E59K", "Q77H", "I80V", "-107N", "-109S", "-117S", "-118V", "-119N", "-120S", "-121S", "-122W", "-123T", "-124E", "E125V", "K127R", "K141R", "D157G", "-159G", "S162Q", "H188Y", "K201N", "P203T", "E241K", "T261K", "E262D", "I269V", "D294A", "K300N", "A309K", "N312K", "K316D", "R322K", "K323Q", "T366S", "-368T", "N369G", "S370N", "T371S", "-372S", "-373D", "-374T", "-379N", "-382A", "-385T", "I396V", "N414E", "N433G", "N437S", "D449N", "K462E"], "gp41": ["L9I", "N105S", "Q108E", "D109K", "E110D", "M118I", "V124I", "N129S", "N160S", "F174V", "M176I", "T208I", "H212N", "G215E", "K223E", "G290A", "G293S", "S298G", "I304L", "A310V"], "nef": ["E18D", "E65G", "Y81F", "G83A", "K105R", "I133V", "E152A", "S163C", "K192T", "R194I", "L198K"], "p17": ["V7I", "K18R", "L61M", "P66S", "Y79F", "K95Q"], "p2": ["-10T", "N11S"], "p24": ["V11I", "M15I", "L83T", "I115V", "I124V", "D128E", "K131R", "R154K", "E180D"], "p6": ["G18R", "P49H", "S51L"], "pro": ["L19Q", "R57K", "K70R"], "rev": ["A10E", "E11G", "T30K", "Q41R", "D84N", "G96Q", "G111E", "E116G"], "tat": ["V36M", "P68S", "S70P", "P73S", "H76Q"], "vif": ["N22H", "M29I", "F39V", "R47T", "K50R", "V51L", "G60E", "L64I", "T74E", "D101N", "I124L", "V125L", "Q136T", "R158K", "R160K"], "vpr": ["D25E", "L26I"], "vpu": ["I17F", "I25L", "L33I", "L34R", "E60D", "L61A", "S62E", "T63E", "M65S", "E66T", "V67I", "G68M", "V69-", "-70E", "-71V", "-72G", "-73N", "-74Y", "-75V", "-76L", "-77L", "D79N", "V82M"]}, "labels": {"aa": "INT: K20R, V37I, K173R, S283G; RT-p51: K43E, V60I, D67N, W88C, I135V, S211R, F214L, L325I, D335G, V435L; RT-p66: K43E, V60I, D67N, W88C, I135V, S211R, F214L, L325I, D335G, V435L, R461K, P468S, L469I, K476Q, E514D; gp120: N57M, L58M, E59K, Q77H, I80V, -107N, -109S, -117S, -118V, -119N, -120S, -121S, -122W, -123T, -124E, E125V, K127R, K141R, D157G, -159G, S162Q, H188Y, K201N, P203T, E241K, T261K, E262D, I269V, D294A, K300N, A309K, N312K, K316D, R322K, K323Q, T366S, -368T, N369G, S370N, T371S, -372S, -373D, -374T, -379N, -382A, -385T, I396V, N414E, N433G, N437S, D449N, K462E; gp41: L9I, N105S, Q108E, D109K, E110D, M118I, V124I, N129S, N160S, F174V, M176I, T208I, H212N, G215E, K223E, G290A, G293S, S298G, I304L, A310V; nef: E18D, E65G, Y81F, G83A, K105R, I133V, E152A, S163C, K192T, R194I, L198K; p17: V7I, K18R, L61M, P66S, Y79F, K95Q; p2: -10T, N11S; p24: V11I, M15I, L83T, I115V, I124V, D128E, K131R, R154K, E180D; p6: G18R, P49H, S51L; pro: L19Q, R57K, K70R; rev: A10E, E11G, T30K, Q41R, D84N, G96Q, G111E, E116G; tat: V36M, P68S, S70P, P73S, H76Q; vif: N22H, M29I, F39V, R47T, K50R, V51L, G60E, L64I, T74E, D101N, I124L, V125L, Q136T, R158K, R160K; vpr: D25E, L26I; vpu: I17F, I25L, L33I, L34R, E60D, L61A, S62E, T63E, M65S, E66T, V67I, G68M, V69-, -70E, -71V, -72G, -73N, -74Y, -75V, -76L, -77L, D79N, V82M"}}}, {"name": "A6_NODE_0000006", "node_attrs": {"div": 0.12971000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T396C", "C426T", "C435A", "C467T", "G470A", "G518A", "A530G", "A534G", "T536C", "A585G", "C586T", "T636C", "A693G", "G697A", "A774C", "C845T", "A941G", "A986G", "A1028G", "G1173A", "T1271A", "C1331T", "G1339A", "C1350T", "T1444C", "A1449C", "-1459A", "A1580G", "T1646C", "G1718A", "C1721T", "A1839G", "A1963G", "A2075C", "G2182A", "C2203G", "A2211T", "G2329A", "C2605A", "T2612G", "A2626G", "A2641G", "T2668G", "C2694T", "A2710G", "C2806T", "T2829C", "T2839A", "G3071A", "T3072C", "A3165G", "C3178T", "G3208A", "C3266T", "T3331C", "C3504A", "C3589T", "T3638G", "G3664A", "T3779C", "A3784C", "C3808T", "T4039C", "T4216C", "G4264A", "C4396T", "A4625G", "G4631A", "A4786C", "C4820A", "A4878C", "A4915G", "C4967A", "C4993A", "C5003T", "C5006T", "A5015G", "C5056A", "G5066A", "A5113G", "G5114C", "A5230G", "C5242T", 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["D36E", "K39M", "S173V", "T200I", "M245T", "D248E", "V326T", "K357R"], "RT-p66": ["D36E", "K39M", "S173V", "T200I", "M245T", "D248E", "V326T", "K357R", "T470N", "S515A"], "gp120": ["T23N", "N57S", "E105N", "S111N", "L137I", "N143K", "I156T", "N161D", "T172V", "A191T", "K199M", "N204L", "T216S", "S253G", "T277K", "A288T", "K300Q", "V305I", "N312S", "T319E", "Y324H", "N327-", "-368S", "-372V", "-373T", "-385N", "R412K", "N414S", "V418I", "N434E", "S436N", "N437-", "I443T", "K474R"], "gp41": ["R74G", "Q108L", "E110Q", "S125A", "N129E", "I130T", "D133N", "K137I", "S157G", "G230D", "A268V", "S277L", "G290R"], "nef": ["H40Y", "F85L", "P150Q", "M182R"], "p17": ["L34I", "T67A", "T84V", "T120A", "G121D"], "p2": ["V7A", "Q8T", "N11-"], "p24": ["M15L", "V148I", "R203K"], "pro": ["K14R", "I93L"], "rev": ["A68E", "I78L", "G108E"], "tat": ["N12K"], "vif": ["K67T", "D78E", "I98L", "Y110C", "H127Q", "T157K", "K176S"], "vpr": ["A4P", "V89G"], "vpu": ["V10A", "K32R"]}, "labels": {"aa": "INT: E3D, R284G, D286N; RT-p51: D36E, K39M, S173V, T200I, M245T, D248E, V326T, K357R; RT-p66: D36E, K39M, S173V, T200I, M245T, D248E, V326T, K357R, T470N, S515A; gp120: T23N, N57S, E105N, S111N, L137I, N143K, I156T, N161D, T172V, A191T, K199M, N204L, T216S, S253G, T277K, A288T, K300Q, V305I, N312S, T319E, Y324H, N327-, -368S, -372V, -373T, -385N, R412K, N414S, V418I, N434E, S436N, N437-, I443T, K474R; gp41: R74G, Q108L, E110Q, S125A, N129E, I130T, D133N, K137I, S157G, G230D, A268V, S277L, G290R; nef: H40Y, F85L, P150Q, M182R; p17: L34I, T67A, T84V, T120A, G121D; p2: V7A, Q8T, N11-; p24: M15L, V148I, R203K; pro: K14R, I93L; rev: A68E, I78L, G108E; tat: N12K; vif: K67T, D78E, I98L, Y110C, H127Q, T157K, K176S; vpr: A4P, V89G; vpu: V10A, K32R"}}, "children": [{"name": "MZ427720", "node_attrs": {"div": 0.14097, "accession": "MZ427720", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2018.0}, "Strain_name": {"value": "RU_ERS_2206_2018"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A276-", "G279A", "-280G", "A304G", "-305A", "A388G", "A431G", "C471G", "T473C", "G495T", "A515C", "A605T", "T746C", "A762G", "C1178T", "T1335C", "A1397G", "A1448C", "C1615A", "C1825A", "A1835G", "A1837G", "A1857G", "G1972A", "C2127A", "G2134A", "A2161G", "C2575T", "A2728T", "G2921A", "C2960T", "G3344A", "C3346T", "A3484G", "G3616A", "A3651G", "T3652C", "A3654G", "A3679G", "C4428T", "C4665T", "C4754T", "G4895A", "A4964G", "A5038T", "G5046A", "A5094G", "C5095T", "G5212A", "A5493G", "C5599G", "C5658T", "T5834C", "G5861A", "T5911G", "T5956C", "T6085G", "T6160C", "G6167A", "A6169C", "C6172A", "A6174G", "C6175T", "G6177A", "G6183C", "T6187C", "A6188C", "G6189C", "C6193T", "-6201G", "-6203A", "-6204T", "-6205C", "-6207G", "-6208T", "-6209A", "-6210A", "-6211C", "-6213T", "-6214C", "-6215A", "-6216C", "-6217T", "-6218G", "-6219A", "G6224-", "A6225-", "A6234G", "A6273G", "A6276G", "G6277C", "A6282G", "C6318A", "A6330G", "A6464C", "A6465T", 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"N80D"], "vif": ["H27Y", "K151I", "T170V"], "vpu": ["V69N", "-70Y", "-71V", "-76P", "-77L"]}, "labels": {"aa": "INT: T218I; RT-p51: T11K, V276I, V417I; RT-p66: T11K, V276I, V417I, N519S, K520R; gp120: D19E, T104S, -107V, -109T, S112P, -117I, -118S, -119N, -120I, -121T, -122E, K127R, K140R, K141S, K143R, S155Q, -159S, E240K, T255N, G293D, R307K, S336A, -379D, E381G, -382G, S383N; gp41: L108I, D113G, T210I, C253W, I307L; nef: Y135F, D149E, E155A; p17: K18R, L46V, A54S; p6: P38S, S39I, P49H; p7: T50N; pro: I13V, K20R; rev: E57Q, P72A, L73F; tat: P75S, N80D; vif: H27Y, K151I, T170V; vpu: V69N, -70Y, -71V, -76P, -77L"}}}, {"name": "MZ427738", "node_attrs": {"div": 0.14906000000000003, "accession": "MZ427738", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2019.0}, "Strain_name": {"value": "RU_ERS_3748_2019"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G285A", "-305G", "G335A", "G394A", "A500C", "A513C", "C516T", "G519C", 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V173I, S211R, K277R, Q334P, A360T; RT-p66: E122K, S162T, V173I, S211R, K277R, Q334P, A360T, R512K, N554K; gp120: T3A, Q77H, K93R, P106-, N108-, T110-, N111-, S112-, N113-, S114-, S115-, S116-, R138K, S155A, N158S, -159D, S160N, S162R, V227I, T255I, K277R, E319V, R322T, K329T, I332S, T360A, N361E, -379V, -382N, N433G, N436R, -437T, D449N, K462R, I463V, K472R; gp41: D113E, Y132H, I135L, F188M, T208I, G215E, I222T, D232T, I235V, A245T, G293S, I325L, C326G, C330R; nef: I10R, V11M, P14T, R19K, I20M, L85V, K105Q, E108D, E155K, S163R, K178G, R188H, L198M; p1: I5L; p17: R20Q, E55D, I60L, E62Q, L64M, E93V, V128D; p24: V11I, P207S; p6: T22A; p7: K20R, R29K; pro: N37D; rev: R50N, D53R, S54A, C63Y, G111E; tat: P73S, S87P; vif: V31I, D61E, V66I, D113E, K128R, T155K, P156S, R181K; vpr: P37L, H40Q, I63T, V84G, S93P; vpu: D78-, D79-, N80-, N81-, V82-"}}}]}]}, {"name": "A6_NODE_0000007", "node_attrs": {"div": 0.10821000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T1427C", "T5654C", "A6990G", "A7155G", "A7964G", "G8328A"], "RT-p66": ["T452I"], "gp120": ["-379S", "N433-"], "gp41": ["I325F", "R342K"], "p17": ["L31I"], "tat": ["V36I", "N80D"], "vif": ["Q136P"]}, "labels": {"aa": "RT-p66: T452I; gp120: -379S, N433-; gp41: I325F, R342K; p17: L31I; tat: V36I, N80D; vif: Q136P"}}, "children": [{"name": "A6_NODE_0000008", "node_attrs": {"div": 0.11145000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A509G", "C1187T", "G1718A", "C4976T", "C5050A", "C5056A", "A5482C", "A5499G", "T5704A", "A6008G", "G6189A", "A6197-", "A6206-", "A6212-", "T6317G", "G6368A", "C6812A", "A6821G", "A6932G", "A6936G", "-6961T", "-6964C", "-6977A", "-6978A", "-6980A", "T7462G", "G8172A", "A8222C", "G8762A", "C8855T", "G8977A", "A8978C", "C8979A"], "gp120": ["T3A", "N52D", "S155A", "T292-", "Q320K", "K323E", "T360A", "D361G"], "gp41": ["K77R", "R221G", "I307L"], "nef": ["K178R"], "p6": ["S39I"], "rev": ["T8P", "K39R"], "tat": ["I36L", "H54P"], "vif": ["F39L", "T155K", "T157K"], "vpu": ["L33I"]}, "labels": {"aa": "gp120: T3A, N52D, S155A, T292-, Q320K, K323E, T360A, D361G; gp41: K77R, R221G, I307L; nef: K178R; p6: S39I; rev: T8P, K39R; tat: I36L, H54P; vif: F39L, T155K, T157K; vpu: L33I"}}, "children": [{"name": "KU749400", "node_attrs": {"div": 0.14275000000000002, "accession": "KU749400", "clade_membership": {"value": "A6"}, "country": {"value": "UA"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMA111UA008"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C23T", "-24T", "C96A", "A101G", "C160A", "C201G", "G202T", "T214A", "-215A", "-216C", "-217A", "A302G", "A304T", "A417C", "C426A", "A440C", "A512G", "C516T", "A527C", "C531T", "A543G", "C606A", "A611G", "A654C", "T718C", "A762G", "G776A", "A818G", "G860A", "C947T", "G1013A", "A1079C", "C1137T", "C1385T", "-1455A", "-1456A", "-1457T", "A1458-", "C1460-", "A1476G", "A1493C", "A1494C", "A1495C", "G1498A", "T1501G", 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["E63D", "I133T", "Y135F"], "p17": ["L34I"], "p24": ["E98D"], "pro": ["G16E"], "rev": ["D53H", "I55L", "A68T"], "vif": ["V31I", "V65I"]}, "labels": {"aa": "INT: I31V; RT-p51: I135T, S162C, V276I, D335G, A376V; RT-p66: I135T, S162C, V276I, D335G, A376V; gp120: P106L, S114N, -117G, -372N, -374T, K462Q; gp41: S165T, L206F, A312G; nef: E63D, I133T, Y135F; p17: L34I; p24: E98D; pro: G16E; rev: D53H, I55L, A68T; vif: V31I, V65I"}}, "children": [{"name": "MT369978", "node_attrs": {"div": 0.15994000000000003, "accession": "MT369978", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2016.0}, "Strain_name": {"value": "RU_ERS_1098_2016"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G257T", "A261G", "A278G", "A302G", "-305G", "A380T", "A389G", "G407A", "C426A", "G455A", "C467T", "C471G", "A534T", "C537A", "A551G", "A585G", "C586T", "C668T", "G690A", "G696A", "G706A", "G712A", "C713-", "A714-", "A715-", "A725C", "C734T", "A762G", 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"A7782G", "G7790A", "C7792T", "A7799C", "T7801A", "A7822T", "C7874T", "G7921C", "C7959T", "C7960T", "A8086G", "A8099G", "G8114T", "G8134C", "G8135A", "T8155C", "T8164C", "C8165A", "G8171A", "T8176C", "G8181T", "T8182C", "G8196A", "C8222T", "G8231T", "G8255A", "A8258C", "G8292T", "C8293T", "A8328G", "G8329A", "G8365A", "G8368A", "C8369A", "G8375A", "C8413A", "T8414A", "T8440C", "A8446G", "A8455C", "A8458G", "G8469A", "T8492A", "T8495C", "T8498C", "C8507T", "G8537A", "T8595A", "C8676T", "C8684T", "C8699T", "A8739G", "A8762T", "A8770T", "C8789T", "G8793T", "A8794C", "G8796A", "A8797T", "A8834C", "C8840T", "G8870T", "A8873G", "C8913T", "A8915T", "A8917C", "C8934A", "T8947A", "C8951T", "G8970A", "C8971T", "A8980T", "T9073C", "C9078A", "-9109G"], "INT": ["K7Q", "K20R", "V32I", "D41N", "K111R", "D134N"], "RT-p51": ["V21I", "K39M", "V106I", "D121H", "T200I", "M245V", "V326I", "Q334P", "T386I", "V435L"], "RT-p66": ["V21I", "K39M", "V106I", "D121H", "T200I", "M245V", "V326I", "Q334P", "T386I", "V435L", "I452L", "P468S", "H483Y", "S491A", "K520N", "N554A", "I556V"], "gp120": ["E21D", "D29N", "I81V", "K93T", "E105T", "-107N", "N108I", "-109T", "S111P", "S112N", "S115I", "-118T", "-119A", "-120Y", "-121E", "-122E", "-123M", "E125-", "M126-", "K140R", "K141Q", "N143K", "I156T", "D157G", "-159N", "N161T", "S162Q", "N204D", "E240K", "T261N", "P263T", "N265K", "I279V", "R280H", "A288V", "Y290V", "A291T", "G293-", "D294-", "I295-", "V305I", "R307K", "Q315R", "E323G", "N327-", "K334E", "L341V", "V343I", "-368N", "-373A", "-375E", "-376V", "N378-", "S379-", "T380-", "R416S", "T427V", "N435S", "S436T", "V468I", "E481Q"], "gp41": ["N96S", "Q108L", "E110D", "D113Q", "N129D", "I130L", "D133N", "K137E", "Q147K", "A151E", "N160S", "D163N", "N166Q", "L191F", "P219L", "I266V", "V271L", "G278S", "L288I", "S298N", "A310S", "V318I", "I319L", "C330L", "K342R"], "nef": ["S8N", "S9K", "P24E", "P28T", "V33A", "Q35R", "D38A", "K39R", "V43I", "T133A", "Y143F", "D151S", "E176D", "L191F", "K192T", "L198M", "F202Y"], "p17": ["L46V", "T67S", "L68I", "T84V", "A119T", "G121S", "S124N", "S126K", "K127-", "Q130H"], "p2": ["N11A", "-12N"], "p24": ["M96L", "S120A", "T200N"], "p6": ["N14H", "M17I", "L26M", "R33Q", "P38S"], "p7": ["K3R", "S4G", "R7K", "I12T", "-13I"], "pro": ["L10V", "N37D", "L63M", "I72V", "V77I"], "rev": ["T14A", "I18T", "I21L", "R38W", "R80G", "D84G", "C89F", "G96Q", "S103P", "S106H", "G108E", "S112P"], "tat": ["N24K", "K29I", "H60R", "H65N", "N67T", "P84L"], "vif": ["R19K", "L39V", "R47S", "H48N", "K50R", "D61N", "R63K", "H80Q", "K92E", "R93T", "S95N", "E117D", "V125L", "S130R", "A137S", "K155N", "R160K", "V166I", "R167K"], "vpr": ["H28Q", "P37Q", "H45Y", "I63S", "V70I", "V89G"], "vpu": ["T2P", "E5I", "Y7F", "F16A", "I17L", "I18L", "R47S", "T63K", "M65-", "E66-", "V67M", "-72G", "-73N", "-74Y", "-75V", "-76R", "-77W"]}, "labels": {"aa": "INT: K7Q, K20R, V32I, D41N, K111R, D134N; RT-p51: V21I, K39M, V106I, D121H, T200I, M245V, V326I, Q334P, T386I, V435L; RT-p66: V21I, K39M, V106I, D121H, T200I, M245V, V326I, Q334P, T386I, V435L, I452L, P468S, H483Y, S491A, K520N, N554A, I556V; gp120: E21D, D29N, I81V, K93T, E105T, -107N, N108I, -109T, S111P, S112N, S115I, -118T, -119A, -120Y, -121E, -122E, -123M, E125-, M126-, K140R, K141Q, N143K, I156T, D157G, -159N, N161T, S162Q, N204D, E240K, T261N, P263T, N265K, I279V, R280H, A288V, Y290V, A291T, G293-, D294-, I295-, V305I, R307K, Q315R, E323G, N327-, K334E, L341V, V343I, -368N, -373A, -375E, -376V, N378-, S379-, T380-, R416S, T427V, N435S, S436T, V468I, E481Q; gp41: N96S, Q108L, E110D, D113Q, N129D, I130L, D133N, K137E, Q147K, A151E, N160S, D163N, N166Q, L191F, P219L, I266V, V271L, G278S, L288I, S298N, A310S, V318I, I319L, C330L, K342R; nef: S8N, S9K, P24E, P28T, V33A, Q35R, D38A, K39R, V43I, T133A, Y143F, D151S, E176D, L191F, K192T, L198M, F202Y; p17: L46V, T67S, L68I, T84V, A119T, G121S, S124N, S126K, K127-, Q130H; p2: N11A, -12N; p24: M96L, S120A, T200N; p6: N14H, M17I, L26M, R33Q, P38S; p7: K3R, S4G, R7K, I12T, -13I; pro: L10V, N37D, L63M, I72V, V77I; rev: T14A, I18T, I21L, R38W, R80G, D84G, C89F, G96Q, S103P, S106H, G108E, S112P; tat: N24K, K29I, H60R, H65N, N67T, P84L; vif: R19K, L39V, R47S, H48N, K50R, D61N, R63K, H80Q, K92E, R93T, S95N, E117D, V125L, S130R, A137S, K155N, R160K, V166I, R167K; vpr: H28Q, P37Q, H45Y, I63S, V70I, V89G; vpu: T2P, E5I, Y7F, F16A, I17L, I18L, R47S, T63K, M65-, E66-, V67M, -72G, -73N, -74Y, -75V, -76R, -77W"}}}, {"name": "MH330379", "node_attrs": {"div": 0.14811000000000002, "accession": "MH330379", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2014.0}, "Strain_name": {"value": "MRK086"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["-305A", "C316T", "G378T", "A398G", "G401A", "C434T", "A492T", "A521C", "T525C", "C535A", "C539T", "A562G", "A571T", "C606A", "A615G", "G629A", "T636G", "G650A", "A673C", "C680A", "A714C", "T763C", "C765T", "A873G", "G899A", "G938A", "C988T", "T1002C", "T1003A", "A1127G", "T1174C", "T1271G", "G1277A", "A1292C", "C1295G", "T1322C", "C1403T", "A1442G", "G1487A", "A1526G", "G1697A", "A1742G", "T1791C", "A1839G", "C1903T", "T1954C", "A2002G", "A2075C", "A2211C", "G2212A", "T2269C", "G2332A", "T2476C", "A2494T", "A2563G", "C2605T", "A2626C", "A2693G", "T2829A", "A2872G", "G2984A", "G2986A", "A3027G", "A3043G", "A3097G", "C3128T", "T3133G", "C3140T", "A3164C", "T3175C", "A3224C", "C3225A", "A3230T", "T3328A", "G3382A", "A3435G", "A3481G", "G3553A", "A3709G", "G3718A", "T3922A", "G4060A", "A4145G", "G4195A", "A4293G", "T4435C", "T4543G", "G4553A", "A4661C", "G4693A", "G4697A", "T4703G", "G4737A", "A4786G", "A4787G", "C4820A", "G4860A", "C4937A", "A4980C", "G4981A", "C4992T", "G4995A", "A5005G", "C5006T", "A5007C", "T5018C", "A5039G", "G5137A", "C5180A", "G5215T", "C5221A", "A5359C", "A5360G", "G5363T", "A5421G", "C5469T", "C5479G", "T5484G", "C5599A", "A5602T", "T5604G", "A5613T", "C5654T", "A5677G", "T5679A", "A5680T", "G5700A", "A5704G", "G5739A", "A5775G", "T5834A", "T5956G", "G5972A", "C5989T", "T6007C", "A6022G", "A6085C", "C6097T", "C6148T", "A6158C", "A6168C", "A6173T", "C6175G", "C6178A", "C6180A", "T6181C", "C6186G", "A6188T", "A6189C", "C6190G", "A6191G", "C6193A", "G6195A", "T6196C", "-6197T", "G6198A", "T6199C", "-6201G", "-6204G", "-6205G", "-6206G", "-6207A", "-6208T", "-6209A", "-6210C", "-6211A", "-6212G", "-6213A", "-6214A", "-6215A", "-6216T", "-6217G", "-6218G", "-6219G", "-6220T", "-6221G", "G6227-", "A6228-", "A6229-", "T6246A", "A6278C", "G6317C", "T6322A", "A6329G", "G6336A", "G6457T", "C6462G", "T6466C", "A6489G", "A6525G", "A6532G", "A6544G", "G6571A", "A6576G", "A6581G", "A6602T", "G6605A", "G6612C", "C6618T", "A6635C", "T6658C", "C6661G", "G6668A", "G6669A", "C6684A", "T6690C", "A6691G", "G6716A", "C6729T", "A6730G", "G6743A", "A6752C", "A6785G", "T6787G", "A6809G", "C6810A", "G6819A", "T6824C", "-6833C", "-6834C", "-6835T", "T6849G", "C6850T", "C6888G", "A6889G", "A6913G", "A6926G", "G6936C", "C6938A", "C6951G", "-6957C", "-6958A", "A6960C", "-6962G", "-6963G", "-6967A", "-6969A", "-6971A", "-6979G", "C6984A", "A6985G", "G6998A", "G7004A", "C7008A", "A7057G", "A7090T", "A7095T", "A7100C", "G7101A", "C7130T", "T7147A", "A7151G", "G7152A", "C7153A", "C7156T", "G7162A", "C7328A", "T7337C", "A7373G", "A7376G", "G7428A", "T7567G", "C7603T", "C7651A", "A7676G", "C7684T", "G7688A", "A7706C", "G7759A", "T7805C", "T7888A", "G7921T", "C7937T", "A7944G", "G7962A", "T7968C", "A7996C", "G7997A", "A7998C", "A8006G", "T8008G", "A8069C", "G8070T", "C8097T", "G8143A", "G8159A", "G8160A", "G8240A", "G8242A", "G8254A", "G8268T", "T8276C", "T8366C", "G8387A", "A8424C", "T8444A", "C8460T", "G8476A", "C8477T", "G8487C", "A8503C", "G8522A", "G8588A", "A8656G", "G8678A", "C8699A", "A8701T", "A8756C", "G8774A", "G8793A", "T8795G", "A8829T", "T8864G", "A8874G", "G8882A", "G8905A", "A8916C", "C8966T", "G8991A", "A9106G", "C9108-", "-9109T", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-", "G9127-", "G9128-", "C9129-", "T9130-", "A9131-", "G9132-", "C9133-", "T9134-", "A9135-", "G9136-", "G9137-", "G9138-", "A9139-", "A9140-", "C9141-", "C9142-", "C9143-", "A9144-", "C9145-", "T9146-", "G9147-", "C9148-", "T9149-", "T9150-", "A9151-"], "INT": ["S124G", "K173R", "D256E", "V260I"], "RT-p51": ["K39T", "E177D", "T200A", "M245E", "E297K", "K311R", "P345S", "F346L", "K357Q", "T377Q", "S379C"], "RT-p66": ["K39T", "E177D", "T200A", "M245E", "E297K", "K311R", "P345S", "F346L", "K357Q", "T377Q", "S379C", "N447S"], "gp120": ["D34E", "V40I", "I56M", "Q77H", "N102H", "E105A", "-107S", "-109N", "T110N", "N113G", "S115Y", "-118D", "-119T", "-120E", "-121M", "-122G", "-123D", "F131Y", "K142Q", "A155P", "I156-", "D157-", "N158-", "S160T", "N161G", "K201N", "P203R", "K212R", "K224R", "E241G", "M243V", "T250S", "D251N", "S253A", "T255I", "T261P", "I269M", "G272N", "T277K", "I279T", "A288T", "-292M", "D294E", "D297N", "K300Q", "N311E", "T319E", "R322K", "Y324H", "-326P", "N328-", "I332S", "T345R", "N358D", "G361A", "L362M", "T366S", "-368T", "N369G", "-373S", "-376T", "-377K", "-381E", "-382T", "-383N", "-384K", "-385N", "R412S", "N414V", "R416Q", "-433E", "N434S", "S436E", "N437T", "E438-", "T439-"], "gp41": ["L9I", "I24V", "T25A", "S42N", "H53Q", "S125G", "I135L", "N195K", "H212Y", "E214G", "G220E", "I222T", "R231S", "D232T", "I235V", "S256L", "S265L", "G286K", "G290E", "G313R", "F325L", "C330R"], "nef": ["H40Y", "S45N", "A49P", "D54A", "K105R", "Y120F", "D151K", "S163C", "D174E", "R178G", "R188H", "K192Q"], "p17": ["A15S", "I31L", "T53S", "E62D", "T67N", "K76R", "Y79F", "I94V", "L101V", "Q113P", "K127Q"], "p2": ["-10T"], "p24": ["V11T", "H12Y", "T48A", "A86V", "F91H", "V148A", "E187D"], "p6": ["I21M"], "pro": ["K14R", "I93L"], "rev": ["T30I", "R50H", "H53R", "S54A", "Q74P", "G99R", "G104E"], "tat": ["Q35E", "R79G", "E85K", "S87P"], "vif": ["R36K", "V51I", "K67R", "D78E", "R132Q", "P136S", "A137T", "N140S", "K141Q", "R184K"], "vpr": ["L26I", "Q85P", "R86S"], "vpu": ["T24A", "I25L", "I33V", "V69N", "-70Y", "-71V", "-72H", "-73L"]}, "labels": {"aa": "INT: S124G, K173R, D256E, V260I; RT-p51: K39T, E177D, T200A, M245E, E297K, K311R, P345S, F346L, K357Q, T377Q, S379C; RT-p66: K39T, E177D, T200A, M245E, E297K, K311R, P345S, F346L, K357Q, T377Q, S379C, N447S; gp120: D34E, V40I, I56M, Q77H, N102H, E105A, -107S, -109N, T110N, N113G, S115Y, -118D, -119T, -120E, -121M, -122G, -123D, F131Y, K142Q, A155P, I156-, D157-, N158-, S160T, N161G, K201N, P203R, K212R, K224R, E241G, M243V, T250S, D251N, S253A, T255I, T261P, I269M, G272N, T277K, I279T, A288T, -292M, D294E, D297N, K300Q, N311E, T319E, R322K, Y324H, -326P, N328-, I332S, T345R, N358D, G361A, L362M, T366S, -368T, N369G, -373S, -376T, -377K, -381E, -382T, -383N, -384K, -385N, R412S, N414V, R416Q, -433E, N434S, S436E, N437T, E438-, T439-; gp41: L9I, I24V, T25A, S42N, H53Q, S125G, I135L, N195K, H212Y, E214G, G220E, I222T, R231S, D232T, I235V, S256L, S265L, G286K, G290E, G313R, F325L, C330R; nef: H40Y, S45N, A49P, D54A, K105R, Y120F, D151K, S163C, D174E, R178G, R188H, K192Q; p17: A15S, I31L, T53S, E62D, T67N, K76R, Y79F, I94V, L101V, Q113P, K127Q; p2: -10T; p24: V11T, H12Y, T48A, A86V, F91H, V148A, E187D; p6: I21M; pro: K14R, I93L; rev: T30I, R50H, H53R, S54A, Q74P, G99R, G104E; tat: Q35E, R79G, E85K, S87P; vif: R36K, V51I, K67R, D78E, R132Q, P136S, A137T, N140S, K141Q, R184K; vpr: L26I, Q85P, R86S; vpu: T24A, I25L, I33V, V69N, -70Y, -71V, -72H, -73L"}}}]}]}, {"name": "A6_NODE_0000010", "node_attrs": {"div": 0.10996000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["-305G", "A1452G", "A2075C", "A2925G", "G4175A", "T5371G", "G6192A", "-6208C", "-6209A", "A6253G", "A6789G", "C6982-", "G7094A", "G7533A", "G7677T", "G7688A", "C8293T", "A8917C"], "INT": ["D134N"], "RT-p51": ["S173L", "K277R"], "RT-p66": ["S173L", "K277R"], "gp120": ["I133M", "T172A"], "nef": ["D151A"], "p24": ["E180D"], "pro": ["I93L"], "vpr": ["V89G"]}, "labels": {"aa": "INT: D134N; RT-p51: S173L, K277R; RT-p66: S173L, K277R; gp120: I133M, T172A; nef: D151A; p24: E180D; pro: I93L; vpr: V89G"}}, "children": [{"name": "A6_NODE_0000011", "node_attrs": {"div": 0.11223000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C201T", "C531T", "G2212T", "C2467T", "A3451G", "C3668T", "A3784T", "A3834G", "G5781A", "G5881A", "-6211C", "-6213G", "-6217G", "A6234G", "A6329G", "C6758T", "C6810T", "A6965-", "C6966-", "A6994T", "G6997C", "A7290G", "G7477A", "A7626T", "T7702G", "C8097T", "G8268T", "G8875A", "C8971-"], "INT": ["E3D", "K20R"], "RT-p51": ["K39N"], "RT-p66": ["K39N", "I452M"], "gp120": ["S111N", "S116-", "H302Y", "N312S", "K474R", "E479G"], "gp41": ["Q108L", "D133E", "S298N", "G322V"], "nef": ["P28T"], "p17": ["P66S"]}, "labels": {"aa": "INT: E3D, K20R; RT-p51: K39N; RT-p66: K39N, I452M; gp120: S111N, S116-, H302Y, N312S, K474R, E479G; gp41: Q108L, D133E, S298N, G322V; nef: P28T; p17: P66S"}}, "children": [{"name": "A6_NODE_0000012", "node_attrs": {"div": 0.11707000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G518A", "A1028C", "C1137T", "G1452A", "C1706T", "G1845A", "C2127A", "G2273A", "G3127A", "C3252T", "C3436T", "A3866G", "G3896A", "C3970T", "G4195A", "G5371T", "G5444A", "A5576C", "T5653G", "C5778T", "G5783A", "G5805A", "A5865G", "A6168C", "A6200-", "C6202-", "-6205G", "-6207T", "C6208A", "-6210C", "-6214A", "-6216T", "-6220G", "G6314A", "A6395T", "G6578A", "G6668A", "G6669A", "G6734A", "T6863A", "G6881A", "-6962A", "-6971A", "-6973C", "C6984A", "C7000A", "G7004A", "T7009A", "G7089A", "A7095T", "A7628C", "A7676T", "T7692C", "C7755A", "G8241A", "G8242A", "T8243G", "A8264G", "C8640T", "A8829T", "C8855T", "C8934A", "C8966T", "A8967G", "G8968A"], "INT": ["I31V", "D41N"], "RT-p51": ["T11K", "V60I", "T386I"], "RT-p66": ["T11K", "V60I", "T386I"], "gp120": ["E4G", "D157G", "T181S", "V242I", "G272N", "S337T", "V343I", "-372W", "-382E", "N414I"], "gp41": ["I130T", "A151E", "G313E", "W314G", "I321V"], "nef": ["S163C", "L198M"], "pro": ["G16E"], "rev": ["I21L"], "tat": ["S23N", "N67T"], "vpr": ["G89V"], "vpu": ["F16A"]}, "labels": {"aa": "INT: I31V, D41N; RT-p51: T11K, V60I, T386I; RT-p66: T11K, V60I, T386I; gp120: E4G, D157G, T181S, V242I, G272N, S337T, V343I, -372W, -382E, N414I; gp41: I130T, A151E, G313E, W314G, I321V; nef: S163C, L198M; pro: G16E; rev: I21L; tat: S23N, N67T; vpr: G89V; vpu: F16A"}}, "children": [{"name": "KY658681", "node_attrs": {"div": 0.14984, "accession": "KY658681", "clade_membership": {"value": "A6"}, "country": {"value": "UA"}, "date": {"value": 2012.0}, "Strain_name": {"value": "DEMA112UA013"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T13C", "A14G", "C23-", "-24T", "T45C", "G99A", "T100A", "T103A", "G121A", "G158A", "T201C", "G256-", "T396C", "C426A", "C434T", "G452A", "T485G", "A513G", "A515G", "C539T", "A562G", "A563G", "G607T", "A693G", "G697A", "C713T", "G717A", "C719T", "A724T", "A762G", "C767T", "G776A", "T788C", "A806G", "G866T", "C902T", "C947T", "G1019A", "G1077A", "G1078C", "G1090A", "T1148C", "G1192A", "A1346G", "-1455A", "-1456A", "-1457T", "A1458-", "C1460-", "G1472A", "A1474G", "G1486A", "C1536A", "G1553A", "A1607G", "A1661G", "T1679C", "A1689C", "A1691G", "C1692A", "A1694G", "C1785T", "A1786C", "C1831T", "A1835G", "A1849G", "T1978A", "G2027A", "A2164G", "A2179G", "T2206C", "A2290G", "G2463A", "T2467C", "T2499C", "C2521T", "C2596A", "T2612A", "A2626C", "T2737C", "A2788C", "C2845T", "G2869A", "C3023T", "T3067A", "A3103G", "C3128G", "A3160T", "A3192G", "A3224C", "C3225T", "A3226G", "T3262C", "A3280G", "A3292T", "C3415T", "G3564A", "G3630A", "A3655T", "G3664A", "A3703G", "A3709G", "A3727C", "A3736G", "T3742C", "G3796A", "G3869A", "A3949T", "G4060A", "G4063A", "A4108G", "A4175G", "T4321C", "C4428T", "T4674C", "G4693A", "A4694G", "G4696A", "G4727A", "A4786T", "C4800T", "G4860A", "C4902T", "C4937A", "T4938G", "G4959T", "G4982C", "C4992T", "A5038G", "G5060A", "G5066A", "A5119G", "C5180A", "G5185A", "G5212A", "G5215A", "A5230G", "C5251T", "T5263C", "G5272A", "G5355T", "A5432G", "T5448C", "A5462T", "T5484A", "A5537C", "C5578T", "C5612A", "A5613C", "G5668A", "A5677G", "A5680T", "T5688C", "A5689T", "C5795A", "A5800G", "-5812G", "A5824-", "C5833A", "C5862G", "A5866C", "A5867-", "A5868-", "C5869-", "C5923T", "A5952T", "T5964C", "T5980C", "A5995G", "A6008G", "T6024C", "A6031C", "T6046A", "A6050G", "A6086G", "T6091C", "C6148T", "T6154C", "T6184A", "A6185T", "C6186G", "G6189A", "A6197C", "A6206T", "C6211A", "G6213C", "-6215G", "-6218G", "-6219T", "-6221T", "-6222T", "-6223T", "A6229G", "T6246A", "A6276G", "A6282C", "T6287C", "A6302G", "A6303C", "T6307A", "A6330G", "A6335G", "T6337G", "A6338C", "G6339A", "T6340G", "G6368T", "G6391A", "G6442A", "G6451A", "A6461G", "A6471C", "C6477A", "A6525G", "G6550A", "A6574G", "G6575A", "G6605A", "G6611C", "G6612A", "C6670T", "G6716A", "G6743A", "A6746C", "T6747C", "G6767A", "C6772T", "C6777A", "C6797G", "A6798G", "G6802A", "A6803G", "A6821G", "A6936C", "-6961C", "-6963C", "-6964C", "-6965A", "-6966C", "-6967T", "-6968T", "-6969G", "-6970G", "-6972A", "A6983G", "A6996T", "C6997T", "C6999A", "A7002G", "A7005G", "A7006T", "C7016A", "G7101A", "A7132G", "A7133G", "C7134T", "A7231G", "T7264A", "A7274C", "C7320T", "G7366A", "G7375A", "T7403C", "G7440A", "A7629C", "G7640A", "C7658G", "A7743T", "T7747G", "G7765A", "A7782G", "T7796A", "G7831A", "A7880T", "C7932T", "C7937A", "G7964A", "G7992A", "C8038T", "A8069T", "A8076G", "A8099G", "G8143A", "G8245A", "G8254A", "G8255A", "A8363G", "C8425G", "A8435G", "T8492C", "T8505A", "G8506T", "C8510T", "C8543T", "G8554A", "T8595C", "A8739G", "G8762A", "G8793A", "A8794C", "T8795A", "C8809A", "C8810T", "G8822A", "A8823G", "C8828A", "G8870T", "T8903C", "T8912G", "T8946C", "C8948G", "T8949A", "A8950C", "C8951A", "A8952C", "A8954G", "G8955-", "C9039T", "A9042G", "A9082G", "T9098C", "A9099G", "C9108-", "-9109T", "T9130C"], "INT": ["V32I", "N134D", "T218I"], "RT-p51": ["S123N", "I135T", "L173I", "E177D", "D324E", "P345A", "K366R", "T377L", "E399D"], "RT-p66": ["S123N", "I135T", "L173I", "E177D", "D324E", "P345A", "K366R", "T377L", "E399D", "G490E", "R512K", "K520N"], "gp120": ["T3G", "N5-", "Y33F", "V37A", "N52D", "N57T", "E59D", "N64K", "N66D", "T78A", "E105A", "-107N", "N108S", "-109T", "T110R", "N111C", "S112N", "S115R", "-122V", "-123F", "-124E", "K127R", "F131Y", "K141R", "N143T", "Y145H", "K150A", "V154I", "-159G", "N161G", "S162Q", "A172S", "P203A", "N206T", "T208K", "K224R", "E241K", "D251N", "S253H", "A288T", "D297N", "I298P", "V305I", "T308K", "Q315G", "I317V", "T319I", "K323E", "N327-", "D361A", "S370T", "-373N", "-374E", "-381V", "-383S", "-384S", "-385T", "L388I", "R412K", "R416K", "T427V", "-433T", "N435S", "R474Q"], "gp41": ["A6V", "R46K", "D109P", "D113N", "Q119E", "S125F", "Q147L", "D148E", "N160S", "S165T", "M176I", "I193L", "T210I", "H212N", "G230D", "S256C", "H258R", "S265L", "I266V", "N298S", "V318I"], "nef": ["T28R", "C55I", "R71K", "F85L", "I133V", "A151T", "A156D", "N161D", "N162K", "E176D", "K192T", "F202L", "Y203T", "K204Q", "D205-"], "p17": ["I60V", "K76R", "R91L", "T120A", "G121D", "V128I", "Q130L"], "p2": ["-10T"], "p24": ["M15I", "E45D", "M96I", "G116T", "S120N", "R154K"], "p6": ["P5T", "H36Q", "P38S", "S39I", "S51L"], "p7": ["K3R", "R7K", "L24I"], "pro": ["I13V", "D60E", "V77I"], "rev": ["T8P", "T30K", "Q74L", "D84G", "G99R"], "tat": ["K19R", "K29M", "H54P", "P68S", "P75S", "H76Q"], "vif": ["Y30H", "R36K", "G37E", "K67I", "S118A", "V125L", "R132S", "P136S", "K151R", "Q178R"], "vpr": ["L26I", "V84L"], "vpu": ["T2N", "V21I", "T24A", "I25L", "I28L", "T63K", "M65V", "D78-", "D79-", "N80-", "N81-", "V82-"]}, "labels": {"aa": "INT: V32I, N134D, T218I; RT-p51: S123N, I135T, L173I, E177D, D324E, P345A, K366R, T377L, E399D; RT-p66: S123N, I135T, L173I, E177D, D324E, P345A, K366R, T377L, E399D, G490E, R512K, K520N; gp120: T3G, N5-, Y33F, V37A, N52D, N57T, E59D, N64K, N66D, T78A, E105A, -107N, N108S, -109T, T110R, N111C, S112N, S115R, -122V, -123F, -124E, K127R, F131Y, K141R, N143T, Y145H, K150A, V154I, -159G, N161G, S162Q, A172S, P203A, N206T, T208K, K224R, E241K, D251N, S253H, A288T, D297N, I298P, V305I, T308K, Q315G, I317V, T319I, K323E, N327-, D361A, S370T, -373N, -374E, -381V, -383S, -384S, -385T, L388I, R412K, R416K, T427V, -433T, N435S, R474Q; gp41: A6V, R46K, D109P, D113N, Q119E, S125F, Q147L, D148E, N160S, S165T, M176I, I193L, T210I, H212N, G230D, S256C, H258R, S265L, I266V, N298S, V318I; nef: T28R, C55I, R71K, F85L, I133V, A151T, A156D, N161D, N162K, E176D, K192T, F202L, Y203T, K204Q, D205-; p17: I60V, K76R, R91L, T120A, G121D, V128I, Q130L; p2: -10T; p24: M15I, E45D, M96I, G116T, S120N, R154K; p6: P5T, H36Q, P38S, S39I, S51L; p7: K3R, R7K, L24I; pro: I13V, D60E, V77I; rev: T8P, T30K, Q74L, D84G, G99R; tat: K19R, K29M, H54P, P68S, P75S, H76Q; vif: Y30H, R36K, G37E, K67I, S118A, V125L, R132S, P136S, K151R, Q178R; vpr: L26I, V84L; vpu: T2N, V21I, T24A, I25L, I28L, T63K, M65V, D78-, D79-, N80-, N81-, V82-"}}}, {"name": "MN485977", "node_attrs": {"div": 0.15592, "accession": "MN485977", "clade_membership": {"value": "A6"}, "country": {"value": "BE"}, "date": {"value": 2014.0}, "Strain_name": {"value": "AG"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T213G", "T214-", "-217A", "T227A", "G305A", "T306A", "A380T", "C435A", "A492T", "G495T", "G524A", "A534G", "A571T", "A605G", "G607A", "A619G", "A654C", "A683G", "G770A", "T771G", "G791A", "T852A", "G977A", "C1008G", "G1016A", "A1067G", "A1074G", "A1079C", "C1091T", "G1109A", "T1175C", "C1178T", "T1182C", "A1292G", "C1427T", "A1449C", "-1459A", "G1487A", "T1502C", "C1523T", "C1535T", "T1559C", "A1673G", "G1739-", "A1740-", "T1741-", "C1744T", "C1745A", "-1746A", "-1747C", "-1748C", "A1772G", "A1781G", "C1825A", "A1839G", "A1841G", "A1907G", "T1909G", "A1921G", "A1951G", "C1960T", "A1963G", "G2001A", "A2004G", "A2020G", "T2086C", "C2203A", "A2211T", "T2212G", "G2215A", "A2396C", "A2400G", "A2406G", "A2422T", "T2499A", "G2509A", "G2602T", "T2613C", "G2630A", "G2683A", "G2704A", "A2710G", "T2719C", "C2728A", "G2765A", "A2923G", "G2926A", "C2960T", "A2975C", "A3016G", "A3099G", "C3100T", "C3140T", "A3164C", "G3173A", "A3196G", "A3217G", "G3221A", "C3232T", "A3265G", "A3268G", "C3359T", "A3391G", "T3399A", "G3442C", "G3448A", "G3451A", "G3491A", "C3497T", "T3499C", "C3533T", "T3544G", "C3545A", "A3653C", "A3679G", "A3756C", "G3769A", "T3784A", "G3787A", "A3794C", "C3826T", "T3844C", "A3854C", "G3952A", "C3977T", "C4076T", "G4078A", "T4085C", "T4135C", "G4243A", "T4412C", "T4471C", "G4531A", "C4576T", "T4656A", "G4677A", "A4721T", "A4760T", "G4782A", "A4814C", "C4857A", "G4865T", "G4870A", "G4895A", "C4967A", "T5043G", "T5072C", "T5073C", "T5078C", "A5143G", "T5194C", "A5233G", "C5237T", "C5242T", "A5278G", "T5292C", "A5360G", "T5391C", "G5403A", "G5418A", "T5442C", "T5466C", "A5493C", "C5511T", "C5544T", "A5581G", "C5599A", "A5702G", "C5707T", "C5826T", "G5830A", "T5834C", "T5836A", "G5861A", "A5881G", "G5915A", "G5917T", "A5921T", "A5962G", "T5964G", "A5965C", "C5966A", "A5967C", "C5968A", "A5969C", "A6022G", "A6044G", "T6100C", "A6158C", "G6167A", "C6171T", "A6173-", "A6174-", "C6175-", "G6177A", "C6178T", "A6179G", "C6180T", "T6184C", "A6185C", "C6186A", "T6199C", "A6206C", "-6215C", "-6218A", "-6219A", "-6221A", "-6222A", "-6223A", "G6224T", "A6225G", "G6234A", "C6247T", "C6263A", "A6278C", "T6295C", "A6303G", "T6315C", "T6317C", "T6322A", "A6326G", "G6333A", "T6340C", "A6364G", "A6456G", "G6457A", "A6461C", "T6466G", "G6571A", "A6573G", "G6612C", "A6635G", "C6636A", "C6649A", "C6684A", "G6693A", "C6718A", "G6731A", "G6732A", "T6735A", "A6752C", "T6758C", "G6774A", "A6776G", "C6780A", "C6790A", "A6809G", "T6810G", "C6812A", "A6822C", "-6830A", "-6831A", "-6832T", "-6833A", "-6834A", "-6835C", "A6840C", "A6842G", "C6843T", "C6850T", "G6856C", "C6859A", "T6860C", "G6935A", "C6937A", "-6956A", "-6957A", "-6958C", "-6961A", "-6963A", "-6964T", "-6972G", "-6974A", "-6975C", "-6976T", "-6977T", "-6978G", "-6979G", "-6980G", "-6981A", "-6982C", "G6998A", "C6999T", "A7006C", "C7020A", "A7021T", "A7088G", "G7155C", "G7235A", "A7238G", "G7256A", "A7268C", "C7272G", "A7275G", "A7312G", "A7373T", "A7583G", "C7585T", "C7596T", "T7622A", "C7623G", "G7633C", "T7677C", "A7689G", "A7691T", "G7700A", "A7701C", "A7706C", "A7711G", "A7712G", "T7715G", "G7773A", "T7853C", "G7873A", "G7921T", "G7947A", "G7995A", "A8014G", "G8050A", "C8056T", "C8077T", "C8092A", "A8093G", "T8097C", "G8107A", "G8144A", "G8159T", "G8171A", "G8172A", "T8182G", "G8196A", "G8212A", "A8213C", "G8216A", "T8223C", "T8251C", "T8268G", "T8291A", "T8293G", "G8317A", "A8328G", "G8329A", "G8349A", "G8350A", "T8366C", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "G8376-", "G8377-", "A8378-", "A8400C", "C8406A", "G8409A", "C8413A", "T8414G", "C8425T", "C8460T", "T8480A", "T8495C", "A8531C", "G8537C", "G8588A", "C8597T", "A8652C", "C8661A", "A8663G", "C8676T", "C8690T", "T8740C", "A8746T", "C8775T", "A8797T", "G8807A", "C8809T", "A8821C", "G8868C", "A8869C", "A8873C", "C8917A", "A8918G", "A8922C", "G8923T", "-8971A", "G8991A", "T9097A"], "INT": ["D3E", "K7Q", "N27H"], "RT-p51": ["D36E", "N39M", "K101Q", "K102R", "K104R", "I135K", "E169D", "L173S", "V179I", "S211R", "E224K", "T294P", "D335G", "K357Q", "A360T", "A376T", "V435E"], "RT-p66": ["D36E", "N39M", "K101Q", "K102R", "K104R", "I135K", "E169D", "L173S", "V179I", "S211R", "E224K", "T294P", "D335G", "K357Q", "A360T", "A376T", "V435E", "E449D", "M452I", "V466I", "P468S", "H480Y", "H483Q", "L484I", "K520Q", "N554T"], "gp120": ["E21N", "T23S", "V37G", "H38T", "N39H", "I56M", "N57I", "N64D", "N102H", "E105T", "P106L", "-109V", "T110S", "N111H", "L137I", "K142Q", "K150R", "V154T", "S155P", "N158G", "-159D", "S160D", "K201R", "N204K", "E240G", "S253A", "T261D", "N265K", "T277K", "R280H", "A291T", "T292N", "G293N", "D294V", "K300Q", "Y302H", "R307K", "T308A", "T319G", "Q320K", "K323T", "-326N", "K329T", "T330V", "K334N", "N335K", "S336P", "D361K", "-373S", "-374T", "-376I", "-377N", "S379T", "T380Q", "-383N", "P389H", "R412E", "N432G", "-433G", "N437T", "V461I", "K462E", "V468I", "K472Q", "A473G"], "gp41": ["I24L", "T94A", "P98L", "D109H", "E110D", "N129S", "T130S", "E133T", "I135L", "K137E", "S138A", "S157N", "L206F", "G215E", "R231K", "F263L", "I264V", "G281S", "G286W", "G290K", "I304L", "D305N", "I307T", "V322G", "C330R", "K342R"], "nef": ["G3N", "S9-", "I10-", "V11-", "G12-", "I20L", "A23T", "P24E", "H40Y", "S46R", "E63D", "E65D", "K104Q", "Q107K", "I133T", "Y135F", "A151D", "E152V", "A156V", "E160A", "E176P", "E177D", "R194L"], "p17": ["I31L", "L34I", "T53S", "A54S", "T67A", "Y79F", "R91Q", "K95R", "I107L"], "p2": ["Q8T", "N11-", "I13-"], "p24": ["V11I", "S14A", "S41T", "P93A", "I115V"], "p6": ["P49H"], "pro": ["K14R", "I15V", "N37E", "G68E", "K69R"], "rev": ["A10V", "K39R", "S56G", "A68T", "P70S", "P77S", "H82S", "E87K", "G99E", "G104V", "G108E", "S112A"], "tat": ["I69V", "D80N"], "vif": ["L24I", "V31I", "E45D", "V66I", "E76D", "Q91K", "K92E", "R93S", "S95N", "E117D", "H127Q", "L153V", "N186S"], "vpr": ["H45Y", "I63T", "S96P"], "vpu": ["K32R", "V69N", "-70Y", "-71I", "-76P", "-77M"]}, "labels": {"aa": "INT: D3E, K7Q, N27H; RT-p51: D36E, N39M, K101Q, K102R, K104R, I135K, E169D, L173S, V179I, S211R, E224K, T294P, D335G, K357Q, A360T, A376T, V435E; RT-p66: D36E, N39M, K101Q, K102R, K104R, I135K, E169D, L173S, V179I, S211R, E224K, T294P, D335G, K357Q, A360T, A376T, V435E, E449D, M452I, V466I, P468S, H480Y, H483Q, L484I, K520Q, N554T; gp120: E21N, T23S, V37G, H38T, N39H, I56M, N57I, N64D, N102H, E105T, P106L, -109V, T110S, N111H, L137I, K142Q, K150R, V154T, S155P, N158G, -159D, S160D, K201R, N204K, E240G, S253A, T261D, N265K, T277K, R280H, A291T, T292N, G293N, D294V, K300Q, Y302H, R307K, T308A, T319G, Q320K, K323T, -326N, K329T, T330V, K334N, N335K, S336P, D361K, -373S, -374T, -376I, -377N, S379T, T380Q, -383N, P389H, R412E, N432G, -433G, N437T, V461I, K462E, V468I, K472Q, A473G; gp41: I24L, T94A, P98L, D109H, E110D, N129S, T130S, E133T, I135L, K137E, S138A, S157N, L206F, G215E, R231K, F263L, I264V, G281S, G286W, G290K, I304L, D305N, I307T, V322G, C330R, K342R; nef: G3N, S9-, I10-, V11-, G12-, I20L, A23T, P24E, H40Y, S46R, E63D, E65D, K104Q, Q107K, I133T, Y135F, A151D, E152V, A156V, E160A, E176P, E177D, R194L; p17: I31L, L34I, T53S, A54S, T67A, Y79F, R91Q, K95R, I107L; p2: Q8T, N11-, I13-; p24: V11I, S14A, S41T, P93A, I115V; p6: P49H; pro: K14R, I15V, N37E, G68E, K69R; rev: A10V, K39R, S56G, A68T, P70S, P77S, H82S, E87K, G99E, G104V, G108E, S112A; tat: I69V, D80N; vif: L24I, V31I, E45D, V66I, E76D, Q91K, K92E, R93S, S95N, E117D, H127Q, L153V, N186S; vpr: H45Y, I63T, S96P; vpu: K32R, V69N, -70Y, -71I, -76P, -77M"}}}]}, {"name": "A6_NODE_0000013", "node_attrs": {"div": 0.11385, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G121T", "T213C", "T214G", "-215A", "-216A", "-217A", "G354A", "A1450G", "G2389A", "G3442A", "T5831C", "-6204G", "C6636A", "T6735A", "A6959-", "A6960-", "C6999G", "A7373C", "G8196A", "A8213T", "A8770T", "T9073C"], "RT-p51": ["D335G"], "RT-p66": ["D335G"], "gp120": ["N369-", "S370-", "T371-"], "gp41": ["I24L", "S265L", "I304L"], "nef": ["Y143F"], "p17": ["V7I"]}, "labels": {"aa": "RT-p51: D335G; RT-p66: D335G; gp120: N369-, S370-, T371-; gp41: I24L, S265L, I304L; nef: Y143F; p17: V7I"}}, "children": [{"name": "KU749404", "node_attrs": {"div": 0.14268, "accession": "KU749404", "clade_membership": {"value": "A6"}, "country": {"value": "UA"}, "date": {"value": 2012.0}, "Strain_name": {"value": "DEMA112UA030"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G10T", "T30C", "G52A", "C96T", "G159A", "-280G", "A509G", "C516A", "A530G", "A557G", "A571T", "T602C", "C679A", "A714C", "C734T", "A762G", "T771C", "A839G", "G938A", "A945G", "T1037C", "A1089G", "C1137T", "A1217G", "C1235T", "T1244C", "T1271G", "G1277A", "A1292C", "C1330A", "-1459A", "T1481C", "G1487A", "-1503A", "-1504T", "-1505T", "C1536A", "T1574C", "G1640A", "C1831T", "A1839G", "A1840G", "A1907G", "G1942A", "T2041G", "T2062C", "G2074A", "C2203A", "A2275G", "G2428A", "C2464T", "T2520C", "G2567T", "A2592G", "T2612C", "T2613A", "A2626C", "C2644T", "A2710G", "G2725A", "G2727A", "C2728A", "T2829A", "G2833A", "G2878A", "A2920G", "G2932A", "G3010A", "T3067A", "G3093A", "A3099G", "A3115G", "G3221T", "T3412C", "T3550C", "A3574G", "A3655T", "T3668C", "T3721A", "T3742C", "A3755T", "A3756C", "A3760G", "G3768A", "G3796A", "G3846A", "C4006T", "A4114G", "C4140T", "G4186A", "A4273G", "C4396T", "A4519G", "C4679T", "A4721G", "T4805C", "C4826T", "T4835C", "G4860A", "A4878G", "G4887A", "G4895A", "C4943A", "G4963A", "C5006T", "T5018C", "G5060A", "G5086A", "A5090G", "T5160C", "T5179A", "C5214T", "T5224A", "C5234G", "C5242T", "T5292C", "A5336G", "A5396G", "T5424C", "T5430C", "T5467G", "G5468T", "A5537C", "A5555G", "C5556T", "T5568C", "C5599T", "C5614A", "G5620A", "A5621C", "T5624C", "C5625T", "A5627T", "T5628A", "G5652A", "T5704G", "A5781G", "A5840C", "C5862G", "C5968T", "A6008G", "A6023G", "A6030G", "A6044G", "T6046A", "A6050G", "C6170T", "C6180A", "A6185T", "G6195A", "G6198A", "T6199C", "-6201A", "-6203A", "-6205C", "-6207C", "C6208T", "A6209G", "-6210A", "C6211T", "-6214A", "-6215T", "-6216T", "-6218T", "-6219A", "-6220T", "-6221G", "-6222A", "-6223G", "G6224-", "A6225-", "A6226-", "A6229T", "A6276G", "T6317G", "G6324A", "A6327G", "T6331G", "G6333A", "C6396A", "T6412C", "G6457T", "A6461C", "T6466G", "A6471C", "C6477A", "A6535T", "G6571A", "A6574C", "G6578A", "G6611A", "C6618A", "C6641T", "A6648G", "A6659G", "G6716A", "C6726G", "G6771A", "A6773G", "A6785G", "T6808A", "A6817G", "A6823G", "-6830G", "-6831G", "-6835T", "A6840G", "T6849A", "C6850T", "A6855G", "G6856A", "C6885G", "C6937G", "T6953-", "G6954-", "G6955-", "-6970G", "-6971A", "-6972G", "-6973G", "-6974A", "-6975C", "-6976A", "-6977A", "-6978A", "-6979A", "-6980A", "-6981T", "-6982G", "A6983G", "A6986-", "A6987C", "A6989G", "G6990T", "T6994A", "G6995A", "C6997T", "G6998A", "C7008A", "A7027G", "G7101C", "G7102T", "T7144A", "G7146A", "A7148G", "G7152A", "C7153T", "A7158G", "G7190A", "G7225A", "A7237C", "A7238C", "A7275G", "C7411T", "C7436T", "G7517A", "G7519A", "T7561A", "C7597T", "G7633C", "A7676T", "A7712G", "G7759A", "A7772G", "T7774C", "T7796A", "G7873A", "G7915A", "G7921T", "G7962A", "G7964A", "A7971G", "G7980A", "A8032G", "G8085A", "G8098A", "G8172T", "T8243G", "G8245A", "G8255A", "T8265C", "A8272G", "T8276A", "G8305A", "C8311T", "C8320A", "C8351A", "C8425T", "G8469A", "T8480A", "G8522A", "T8568G", "G8590C", "A8666C", "C8676T", "G8678A", "G8762A", "A8794C", "G8807A", "G8816A", "A8834T", "A8851T", "T8864G", "A8873C", "A8876G", "A8886C", "T8887A", "G8905A", "C8921T", "-8971A", "G9095T", "G9110-", "A9111-", "G9112-", "C9113-", "C9114-", "T9115-", "G9117A"], "INT": ["S24N", "T122I"], "RT-p51": ["D36E", "I142T", "A158S", "K166R", "L173Q", "E177D", "S211K", "M245K", "D324E", "G333E", "A376S"], "RT-p66": ["D36E", "I142T", "A158S", "K166R", "L173Q", "E177D", "S211K", "M245K", "D324E", "G333E", "A376S", "K520N", "N554S", "R558K"], "gp120": ["T3G", "N52D", "N57V", "E59G", "N64E", "N66D", "-107R", "N108S", "T110-", "-116S", "-117N", "-118R", "E125-", "M126-", "K127-", "K141R", "S155A", "N158S", "-159E", "S160N", "N161S", "T181N", "K201N", "N204K", "N206T", "T208K", "E240D", "V242I", "T255N", "T261N", "P263S", "N265S", "I269V", "A288T", "A291G", "S306N", "R307G", "N311D", "S318R", "T319I", "-326G", "N328R", "K329-", "I332N", "K334R", "T344R", "D361E", "W367-", "N378-", "S379N", "T380-", "R416T", "G431D", "N432D", "N434-", "N437S", "D446N", "K462Q"], "gp41": ["V72I", "D109N", "E110D", "S125F", "K137E", "S157G", "S165T", "L206F", "G220E", "K223R", "G226D", "R261K", "G290V", "W314G", "V318I", "I321T", "F325I"], "nef": ["T28I", "V43I", "S46R", "L76V", "G83A", "E108D", "Q170L", "D174E", "E177D", "M182Q", "R188H", "K192T"], "p17": ["I31L", "L61M", "Y79F", "T115N", "K127Q"], "p2": ["N9-", "-10S", "N11A", "-12N"], "p24": ["S14P", "T72A", "S120G", "D180E", "E187D", "T200N"], "p6": ["S51L"], "p7": ["-13I", "L24I"], "pro": ["K14R", "N37D"], "rev": ["T8P", "T14V", "I18T", "T62A", "D84N"], "tat": ["N7S", "C31V", "H54P", "H60R", "E85K"], "vif": ["I98V", "D101N", "E117D", "G126E", "R167K", "C192R"], "vpr": ["M19T", "D25E", "P37L", "H40Q", "Q44E", "I63T"], "vpu": ["P3T", "E5D", "I6S", "F16S", "L33V", "D78-", "D79-", "N80-", "N81-", "V82-"]}, "labels": {"aa": "INT: S24N, T122I; RT-p51: D36E, I142T, A158S, K166R, L173Q, E177D, S211K, M245K, D324E, G333E, A376S; RT-p66: D36E, I142T, A158S, K166R, L173Q, E177D, S211K, M245K, D324E, G333E, A376S, K520N, N554S, R558K; gp120: T3G, N52D, N57V, E59G, N64E, N66D, -107R, N108S, T110-, -116S, -117N, -118R, E125-, M126-, K127-, K141R, S155A, N158S, -159E, S160N, N161S, T181N, K201N, N204K, N206T, T208K, E240D, V242I, T255N, T261N, P263S, N265S, I269V, A288T, A291G, S306N, R307G, N311D, S318R, T319I, -326G, N328R, K329-, I332N, K334R, T344R, D361E, W367-, N378-, S379N, T380-, R416T, G431D, N432D, N434-, N437S, D446N, K462Q; gp41: V72I, D109N, E110D, S125F, K137E, S157G, S165T, L206F, G220E, K223R, G226D, R261K, G290V, W314G, V318I, I321T, F325I; nef: T28I, V43I, S46R, L76V, G83A, E108D, Q170L, D174E, E177D, M182Q, R188H, K192T; p17: I31L, L61M, Y79F, T115N, K127Q; p2: N9-, -10S, N11A, -12N; p24: S14P, T72A, S120G, D180E, E187D, T200N; p6: S51L; p7: -13I, L24I; pro: K14R, N37D; rev: T8P, T14V, I18T, T62A, D84N; tat: N7S, C31V, H54P, H60R, E85K; vif: I98V, D101N, E117D, G126E, R167K, C192R; vpr: M19T, D25E, P37L, H40Q, Q44E, I63T; vpu: P3T, E5D, I6S, F16S, L33V, D78-, D79-, N80-, N81-, V82-"}}}, {"name": "A6_NODE_0000014", "node_attrs": {"div": 0.11928000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A461C", "A534G", "C606A", "G614T", "A715G", "G1192A", "A1367G", "A1449G", "-1455A", "-1456A", "G1657A", "T1724G", "A1835G", "C2075A", "G2311A", "G2463A", "A2693G", "A3265G", "G3684A", "G3715A", "C3808A", "G3952A", "G4573A", "T4674C", "A4735G", "G5134A", "G5355-", "A5359-", "C5795T", "C5826T", "T5827C", "T6024A", "A6131C", "C6148T", "-6218G", "A6280G", "T6287C", "G6336A", "A6602T", "A6714G", "T6824C", "A6983-", "C6984-", "C7016A", "G7155A", "A7470G", "T7677G", "C7932T", "A7970G", "G7992A", "C8037T", "C8051A", "T8366C", "C8699A", "T8723C"], "INT": ["D11E"], "RT-p51": ["S123N", "T200A"], "RT-p66": ["S123N", "T200A", "R530K"], "gp120": ["K93Q", "-107N", "K127R", "Y145H", "T250S", "R280S", "Q287R", "Y324H", "L388I"], "gp41": ["K56R", "T210I", "K223E", "G230D"], "p1": ["S9N"], "p17": ["E42D", "T67A"], "p2": ["N9G"], "p24": ["R154K"], "p6": ["N14S"], "pro": ["I13V", "L93I"], "rev": ["Q41R", "A68E"], "tat": ["P75S"], "vif": ["Y30H", "K50R", "V125L", "R183H"], "vpu": ["-77L"]}, "labels": {"aa": "INT: D11E; RT-p51: S123N, T200A; RT-p66: S123N, T200A, R530K; gp120: K93Q, -107N, K127R, Y145H, T250S, R280S, Q287R, Y324H, L388I; gp41: K56R, T210I, K223E, G230D; p1: S9N; p17: E42D, T67A; p2: N9G; p24: R154K; p6: N14S; pro: I13V, L93I; rev: Q41R, A68E; tat: P75S; vif: Y30H, K50R, V125L, R183H; vpu: -77L"}}, "children": [{"name": "KU749401", "node_attrs": {"div": 0.15226, "accession": "KU749401", "clade_membership": {"value": "A6"}, "country": {"value": "UA"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMA111UA009"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G11A", "T12C", "C23A", "C96G", "T227A", "G305A", "C362A", "G367A", "A417C", "A419G", "A425G", "G480A", "C510A", "C522A", "T531C", "A548G", "T549A", "C558A", "A613C", "A615G", "A654T", "A693G", "G709A", "A714G", "C719T", "G738A", "A745C", "T763C", "C765T", "G803A", "C823G", "G860A", "C872A", "A873G", "C874T", "T885A", "T974C", "C988T", "T1003A", "G1016A", "G1078C", "A1101G", "C1115T", "G1126A", "G1173A", "T1174C", "T1182C", "C1211T", "A1292G", "A1400C", "-1457T", "A1458-", "C1460-", "A1461G", "A1475T", "T1481A", "C1490T", "A1592G", "G1642A", "T1646C", "A1673G", "G1718C", "A1719C", "A1720T", "A1742G", "A1774G", "A1786G", "A1857G", "T1888C", "A1907G", "G1972A", "T1978A", "A1984C", "A2007G", "C2127A", "G2155A", "G2387T", "A2422G", "A2572T", "A2616G", "T2654C", "A2743C", "A2764G", "A2828G", "C2845T", "A3058C", "C3100A", "A3142G", "A3268G", "T3450A", "G3451T", "G3523A", "C3542T", "T3550C", "T3559C", "C3567T", "T3577C", "A3653C", "A3679G", "C3712T", "A3756C", "A4081G", "G4092C", "G4109A", "T4110C", "G4112A", "C4117T", "G4228A", "A4246G", "G4353A", "A4384G", "A4492C", "A4498T", "A4567G", "C4576T", "G4631A", "G4636A", "A4650C", "G4659A", "G4695A", "G4696A", "T4701G", "A4751G", "A4806G", "A4816G", "A4850G", "C4937A", "G4959C", "G4982T", "A5005G", "G5059A", "G5114A", "T5179G", "G5199A", "T5205A", "C5213T", "C5214G", "T5293C", "G5312A", "T5339C", "T5356-", "G5357-", "C5358-", "A5360-", "A5361G", "G5362T", "C5511T", "A5548G", "A5563C", "A5576C", "C5579T", "C5630T", "A5643T", "C5654T", "A5665G", "A5689T", "A5718G", "C5727T", "A5734C", "C5778T", "G5784A", "G5805C", "T5807G", "A5828T", "T5841C", "G5842A", "G5851T", "G5861A", "C5887T", "A5947G", "A5950T", "A5959G", "G6029A", "T6046C", "A6050G", "A6061T", "A6066G", "C6103A", "C6109T", "T6142G", "G6177A", "G6183C", "C6186T", "T6187C", "A6188C", "G6189C", "C6190T", "G6195A", "A6200G", "-6201G", "C6202T", "-6203G", "-6205T", "-6207A", "-6210G", "-6214C", "-6215G", "-6216A", "-6219T", "-6220T", "-6221A", "-6222A", "-6223A", "G6227C", "A6228T", "T6242A", "A6251G", "A6282G", "A6286G", "A6304G", "G6324A", "A6327G", "G6329A", "G6368A", "G6373A", "G6425A", "A6449G", "T6460G", "C6462A", "A6471C", "C6477A", "A6489G", "C6511T", "A6573G", "G6593A", "C6618T", "A6635G", "C6692A", "A6751G", "G6774A", "A6786C", "G6789A", "A6811G", "-6833A", "-6834A", "-6835T", "-6956A", "-6957A", "-6958C", "-6959G", "-6960G", "-6961C", "-6962A", "-6963G", "-6964C", "-6965A", "-6966A", "-6967T", "-6968A", "-6969G", "-6970C", "-6971A", "-6972C", "-6973T", "-6974G", "-6975C", "-6976C", "A6985-", "A6987T", "T6988G", "G6990A", "C6991T", "C6993G", "T6994C", "G6995T", "A6996C", "C6997A", "C7008A", "T7015C", "C7020A", "A7021C", "G7101C", "G7102A", "A7107T", "A7123G", "C7134T", "T7144G", "C7201T", "G7225A", "A7275G", "C7397A", "A7402G", "T7403C", "G7405A", "T7462A", "A7504C", "A7533G", "A7572G", "G7608C", "T7622A", "C7623A", "A7629C", "G7633A", "A7668G", "A7688G", "T7692C", "G7700C", "G7759A", "A7799C", "G7835A", "C7912A", "A7918G", "C7937A", "G7964A", "G7979A", "A7998G", "T8008A", "A8032T", "G8055A", "C8056T", "T8060A", "G8061C", "C8062T", "G8130A", "T8213C", "T8223C", "A8264G", "G8280T", "A8328T", "G8329A", "A8337T", "G8388A", "A8458G", "T8480A", "G8522A", "G8528A", "A8536G", "G8555A", "G8570A", "A8584T", "C8597T", "C8607T", "A8608T", "A8657G", "A8794C", "A8798T", "G8814A", "G8818A", "A8834C", "C8840T", "A8874G", "A8875G", "G8905A", "C8917A", "C8951T", "G8970C", "-8971T", "C9078T", "G9096A", "T9097C", "C9108A"], "INT": ["G106A", "V112T", "V113I", "G193E", "I203M", "D286N"], "RT-p51": ["T11K", "A98S", "K174R", "M245V", "G335E"], "RT-p66": ["T11K", "A98S", "K174R", "M245V", "G335E", "M452N", "H483Y", "S491L", "K520Q", "N554T"], "gp120": ["E59K", "N66D", "K69N", "N71S", "-109S", "S112T", "S114N", "-116G", "-117G", "-118N", "-119S", "-120S", "-121E", "-122V", "-123K", "-124E", "E125L", "S130T", "M133V", "N143S", "N158S", "-159N", "A172T", "M173I", "A191T", "K199E", "D202E", "P203K", "N206T", "T208K", "K212R", "E240G", "E247K", "S253G", "T255I", "T261D", "R307K", "N311T", "S312N", "T319M", "-368N", "-376G", "-377S", "-381A", "-382G", "-383N", "-384E", "-385N", "P389H", "R416T", "E418V", "T427I", "-433G"], "gp41": ["Q32K", "H53Q", "K77R", "K90R", "S102T", "S107N", "D109T", "K122R", "N129D", "I130T", "E133Q", "N166H", "V178I", "H212N", "G226S", "D232G", "A245V", "S251N", "C253T", "S277L", "I307T", "I321V", "C326F", "K342I", "Q345L"], "nef": ["V16I", "K39R", "S46R", "E65G", "Y81F", "H89F", "E152D", "E158K", "G159E", "K178G", "R188H"], "p1": ["R4K"], "p17": ["S9R", "G11E", "K28Q", "I31L", "G49S", "Q59K", "Q63K", "S66P", "S72T", "L75I", "E93A", "I94V", "I107L", "T120A", "S125N", "K127G"], "p2": ["N11A", "-12N", "I13V"], "p24": ["V3M", "N5T", "V11T", "H12Y", "A31G", "T48V", "L52I", "A86V", "F91Y", "G116A", "I124V", "R132K", "V148T"], "p6": ["E13D", "S14L", "F15L", "I21M", "D32G", "H36R"], "p7": ["K3N", "N5K"], "pro": ["K20R", "N37D", "D60E", "K70R"], "rev": ["I21L", "T30K", "R44K", "S54T", "T62S", "P70S", "V71D", "P72S"], "tat": ["T58A", "K63Q", "N67T", "P68L", "H76Q"], "vif": ["R17K", "N22H", "V25I", "G37K", "F39V", "T74A", "K77R", "K92E", "R132S", "N140S", "R158K"], "vpr": ["A4T", "D25E", "R32K", "F34Y", "P37W", "V70I", "Q85R", "R86-", "R87-"], "vpu": ["A8V", "L12F", "I20V", "I28L", "I43L", "E66D", "V67G", "V69N", "-70L", "-75A", "-76L", "D79N", "V82L"]}, "labels": {"aa": "INT: G106A, V112T, V113I, G193E, I203M, D286N; RT-p51: T11K, A98S, K174R, M245V, G335E; RT-p66: T11K, A98S, K174R, M245V, G335E, M452N, H483Y, S491L, K520Q, N554T; gp120: E59K, N66D, K69N, N71S, -109S, S112T, S114N, -116G, -117G, -118N, -119S, -120S, -121E, -122V, -123K, -124E, E125L, S130T, M133V, N143S, N158S, -159N, A172T, M173I, A191T, K199E, D202E, P203K, N206T, T208K, K212R, E240G, E247K, S253G, T255I, T261D, R307K, N311T, S312N, T319M, -368N, -376G, -377S, -381A, -382G, -383N, -384E, -385N, P389H, R416T, E418V, T427I, -433G; gp41: Q32K, H53Q, K77R, K90R, S102T, S107N, D109T, K122R, N129D, I130T, E133Q, N166H, V178I, H212N, G226S, D232G, A245V, S251N, C253T, S277L, I307T, I321V, C326F, K342I, Q345L; nef: V16I, K39R, S46R, E65G, Y81F, H89F, E152D, E158K, G159E, K178G, R188H; p1: R4K; p17: S9R, G11E, K28Q, I31L, G49S, Q59K, Q63K, S66P, S72T, L75I, E93A, I94V, I107L, T120A, S125N, K127G; p2: N11A, -12N, I13V; p24: V3M, N5T, V11T, H12Y, A31G, T48V, L52I, A86V, F91Y, G116A, I124V, R132K, V148T; p6: E13D, S14L, F15L, I21M, D32G, H36R; p7: K3N, N5K; pro: K20R, N37D, D60E, K70R; rev: I21L, T30K, R44K, S54T, T62S, P70S, V71D, P72S; tat: T58A, K63Q, N67T, P68L, H76Q; vif: R17K, N22H, V25I, G37K, F39V, T74A, K77R, K92E, R132S, N140S, R158K; vpr: A4T, D25E, R32K, F34Y, P37W, V70I, Q85R, R86-, R87-; vpu: A8V, L12F, I20V, I28L, I43L, E66D, V67G, V69N, -70L, -75A, -76L, D79N, V82L"}}}, {"name": "MZ427731", "node_attrs": {"div": 0.159, "accession": "MZ427731", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2019.0}, "Strain_name": {"value": "RU_ERS_3694_2019"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G256A", "A286G", "G317A", "T422C", "C426A", "C467T", "A500G", "C516A", "A571T", "A653G", "C657A", "A678G", "C680A", "C681-", "A682-", "A683-", "C684-", "A685-", "G686-", "G687-", "C688-", "A689-", "G716T", "C734T", "G776A", "A836G", "T852A", "T858C", "G866A", "A878G", "C890T", "T892C", "C902T", "T904C", "C950A", "C1008G", "C1115A", "T1175C", "T1229C", "A1307G", "A1340G", "A1349G", "C1385T", "A1412G", "C1427T", "T1439C", "T1444C", "-1457C", "-1459T", "C1460A", "A1463G", "A1476G", "G1486A", "G1487A", "A1495G", "G1498A", "C1550T", "A1661G", "T1682C", "A1703C", "G1725A", "G1737C", "T1741G", "A1743G", "C1744A", "-1746A", "-1747A", "-1748T", "C1751-", "T1752-", "C1753-", "C1754-", "C1755-", "T1756-", "G1757-", "A1758-", "A1759-", "A1760-", "C1761-", "A1762-", "G1763-", "G1764-", "A1765-", "A1766-", "C1767-", "A1768-", "G1769-", "A1770-", "A1771-", "A1772-", "G1773-", "A1774-", "C1775-", "A1776-", "G1777-", "G1778-", "G1779-", "A1780-", "A1781-", "C1782-", "A1783-", "G1784-", "C1785-", "A1786-", "C1826G", "G1845A", "C1853T", "G1968A", "A1969G", "A1993G", "A2023G", "A2113C", "C2203A", "A2210G", "T2302C", "G2350A", "T2392A", "A2398G", "A2399C", "A2403G", "A2422T", "G2518A", "T2608C", "A2611G", "A2629G", "G2630A", "C2653T", "G2704T", "A2710G", "G2727A", "C2728A", "G2921A", "A2989G", "A3031G", "T3067C", "A3099G", "C3140T", "A3165G", "G3168A", "G3173A", "G3221A", "T3303C", "T3358C", "C3368T", "G3385A", "T3399C", "C3405T", "T3445C", "C3475T", "T3493G", "C3545T", "T3613C", "G3631T", "G3643C", "C3649T", "A3665C", "A3675C", "A3685G", "C3688A", "G3694A", "A3745G", "T3778C", "G3834A", "A3862G", "G3877A", "T3904C", "T3909A", "A3913G", "T4177C", "A4519G", "T4656C", "T4702G", "G4708A", "C4728A", "G4766A", "G4774A", "C4776A", "A4786T", "T4799G", "G4860A", "G4865A", "C4871A", "T4910C", "T4914C", "G4959T", "C4967A", "T5016C", "G5046A", "G5065A", "G5128A", "T5188G", "C5221T", "T5239C", "-5355T", "-5359T", "G5363A", "G5375A", "G5386A", "C5397G", "T5467G", "G5468T", "C5469T", "A5481G", "A5482C", "A5493G", "G5558A", "T5562C", "C5578A", "C5579A", "A5611C", "C5612A", "A5622G", "C5625T", "G5652A", "C5678G", "T5679C", "G5699A", "G5700A", "A5702G", "G5730A", "A5751C", "C5769A", "A5796G", "A5800G", "-5812G", "A5824-", "T5834C", "A5840T", "A5884G", "G5917T", "T6026A", "A6086G", "C6087A", "A6088G", "T6154C", "A6158G", "C6171T", "G6183T", "T6184C", "A6185G", "A6194G", "T6196C", "G6198A", "-6201A", "-6203A", "-6205C", "-6207G", "-6210A", "A6212G", "G6213A", "-6214T", "-6215A", "-6216C", "-6219G", "-6220G", "-6221T", "-6222T", "-6223T", "A6226G", "C6247T", "C6250T", "A6274T", "T6283A", "T6322A", "G6323A", "T6331A", "A6335G", "A6338G", "T6340A", "A6349C", "T6361C", "A6367G", "A6376G", "G6392A", "A6395T", "G6403T", "A6456T", "G6458A", "A6461G", "A6464T", "A6465C", "G6572C", "G6575A", "T6598C", "T6637G", "G6640A", "C6666G", "A6679C", "C6684A", "G6693C", "A6706G", "A6757T", "A6764G", "A6765T", "G6771A", "C6780A", "A6785G", "T6787A", "A6791G", "C6797A", "G6802C", "A6809G", "T6810C", "C6812G", "A6820G", "A6821G", "A6822G", "T6849G", "A6854C", "T6895C", "C6898T", "G6905A", "A6936C", "G6948A", "C6949T", "A6950-", "C6951-", "T6952-", "T6953-", "G6954-", "G6955-", "-6983T", "-6984G", "A6985G", "A6989G", "G6998A", "G6999T", "C7000A", "G7004A", "A7006C", "T7009A", "A7044G", "T7045A", "A7094G", "T7096A", "T7147A", "A7149G", "T7150A", "G7152A", "C7156T", "A7161G", "G7162C", "C7165T", "-7166G", "-7167A", "-7168A", "-7169G", "-7170T", "-7171C", "A7186G", "G7197A", "G7256A", "G7270A", "G7276A", "A7280C", "G7290A", "C7373G", "G7440A", "C7460A", "C7486T", "G7513T", "A7590G", "A7628G", "T7642C", "A7712C", "G7769A", "G7773A", "A7782G", "C7874A", "T7893C", "A7936T", "A7944C", "A7977G", "G8005C", "C8033A", "G8036T", "T8047C", "C8065T", "G8144A", "T8182G", "T8200C", "G8234A", "T8235C", "G8241A", "T8243-", "G8244-", "G8245-", "A8246-", "C8247-", "A8248-", "G8249-", "A8250-", "T8251-", "A8252-", "G8253-", "G8254-", "G8255T", "A8275G", "T8276C", "T8291C", "T8293C", "C8311T", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "G8376-", "G8377-", "A8378-", "A8435G", "G8469A", "C8507T", "C8510G", "C8597G", "C8640T", "G8682A", "C8684G", "C8702T", "T8741C", "G8762A", "A8797T", "A8815T", "C8825T", "T8835C", "A8858G", "G8861A", "G8870T", "A8873G", "G8882A", "A8885G", "A8967T", "A8969C", "G8970T", "-8971G", "G8977A", "A8978C", "C8979A", "T9029C", "C9078A", "G9095T", "A9106G"], "INT": ["R20K", "L45Q"], "RT-p51": ["E6D", "D36E", "N39D", "K102Q", "K103R", "I178M", "V179I", "E203D", "S211K", "V276I", "K357R", "G358E", "A360T", "A376T", "M403T", "V435A", "A437V"], "RT-p66": ["E6D", "D36E", "N39D", "K102Q", "K103R", "I178M", "V179I", "E203D", "S211K", "V276I", "K357R", "G358E", "A360T", "A376T", "M403T", "V435A", "A437V", "R512S", "E516D", "K524Q", "E527A"], "gp120": ["E21D", "L58M", "T78E", "P106L", "-109D", "N111G", "S112F", "N113E", "S114-", "S115-", "K140N", "N143K", "D157S", "-159E", "N161D", "S162G", "V180I", "T181S", "E183D", "K201M", "D202N", "P203A", "N204S", "E240Q", "E241K", "T261K", "P271R", "T277K", "S280P", "N304V", "S306N", "A309E", "T313A", "K316N", "T319A", "Q320E", "K323G", "N327-", "I332S", "K334Q", "G351R", "D361A", "S365N", "T366W", "W367-", "-381D", "-382I", "-385T", "N397R", "N414E", "N432R", "-433N", "T439V", "R448K", "V468I", "R474K", "G479E"], "gp41": ["L24V", "R46K", "H53N", "N96S", "K137Q", "A156T", "S157N", "N160S", "L191I", "V197A", "E214A", "R221G", "E225G", "L244I", "A245F", "G281S", "V311T", "G313E", "W314F", "T315-", "D316-", "R317-", "V318-", "F325L", "C330R"], "nef": ["S9-", "I10-", "V11-", "G12-", "V43I", "F85L", "V114M", "A151D", "E152V", "E158V", "M173I", "E176D", "K192T"], "p17": ["L61M", "Y79F", "E93D", "Q108K", "T115A", "Q116-", "Q117-", "A118-", "K127S"], "p2": ["V7A", "-10A", "-12I", "I13M"], "p24": ["V11I", "M15I", "S41T", "M54T", "I58T", "P93A", "D128E"], "p6": ["F15I", "G16-", "M17-", "G18-", "E19-", "E20-", "I21-", "T22-", "P24-", "S25-", "L26-", "K27-", "Q28-", "E29-", "Q30-", "K31-", "D32-", "R33-", "E34-", "Q35-", "H36-", "P37-", "P38-", "S39-"], "p7": ["S4G", "R7K", "K10R", "R11K"], "pro": ["L10V", "G16E", "R57K"], "rev": ["A15T", "V16A", "L22I", "T30S", "R32S", "K39R", "D53H", "T62N", "C63F", "S67P", "L73F", "G99E", "S112A"], "tat": ["V4I", "N7K", "C31V", "I36L", "S61N", "P68N", "H76L"], "vif": ["F39C", "R41K", "H48N", "R63K", "L64I", "K67I", "Y110H", "E117D", "H127Q", "S144P", "V154I", "R160K", "R181K"], "vpr": ["H28Q", "V84L", "Q85L", "S94N"], "vpu": ["T2Q", "F16S", "R31K", "K32R", "E48D", "E60D", "L61A", "S62E", "T63E", "M65S", "E66-", "V67M", "G68L", "-70E", "-71V", "-72G", "-73D", "-74H", "-76P", "D78V"]}, "labels": {"aa": "INT: R20K, L45Q; RT-p51: E6D, D36E, N39D, K102Q, K103R, I178M, V179I, E203D, S211K, V276I, K357R, G358E, A360T, A376T, M403T, V435A, A437V; RT-p66: E6D, D36E, N39D, K102Q, K103R, I178M, V179I, E203D, S211K, V276I, K357R, G358E, A360T, A376T, M403T, V435A, A437V, R512S, E516D, K524Q, E527A; gp120: E21D, L58M, T78E, P106L, -109D, N111G, S112F, N113E, S114-, S115-, K140N, N143K, D157S, -159E, N161D, S162G, V180I, T181S, E183D, K201M, D202N, P203A, N204S, E240Q, E241K, T261K, P271R, T277K, S280P, N304V, S306N, A309E, T313A, K316N, T319A, Q320E, K323G, N327-, I332S, K334Q, G351R, D361A, S365N, T366W, W367-, -381D, -382I, -385T, N397R, N414E, N432R, -433N, T439V, R448K, V468I, R474K, G479E; gp41: L24V, R46K, H53N, N96S, K137Q, A156T, S157N, N160S, L191I, V197A, E214A, R221G, E225G, L244I, A245F, G281S, V311T, G313E, W314F, T315-, D316-, R317-, V318-, F325L, C330R; nef: S9-, I10-, V11-, G12-, V43I, F85L, V114M, A151D, E152V, E158V, M173I, E176D, K192T; p17: L61M, Y79F, E93D, Q108K, T115A, Q116-, Q117-, A118-, K127S; p2: V7A, -10A, -12I, I13M; p24: V11I, M15I, S41T, M54T, I58T, P93A, D128E; p6: F15I, G16-, M17-, G18-, E19-, E20-, I21-, T22-, P24-, S25-, L26-, K27-, Q28-, E29-, Q30-, K31-, D32-, R33-, E34-, Q35-, H36-, P37-, P38-, S39-; p7: S4G, R7K, K10R, R11K; pro: L10V, G16E, R57K; rev: A15T, V16A, L22I, T30S, R32S, K39R, D53H, T62N, C63F, S67P, L73F, G99E, S112A; tat: V4I, N7K, C31V, I36L, S61N, P68N, H76L; vif: F39C, R41K, H48N, R63K, L64I, K67I, Y110H, E117D, H127Q, S144P, V154I, R160K, R181K; vpr: H28Q, V84L, Q85L, S94N; vpu: T2Q, F16S, R31K, K32R, E48D, E60D, L61A, S62E, T63E, M65S, E66-, V67M, G68L, -70E, -71V, -72G, -73D, -74H, -76P, D78V"}}}]}]}]}, {"name": "A6_NODE_0000015", "node_attrs": {"div": 0.11140000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G495T", "-1459A", "A2020G", "G2567T", "A3709G", "A3755T", "C3808A", "G4696A", "C4937A", "T6321C", "A6327G", "C6618T", "A6776G", "-6833A", "-6834A", "-6835T", "-6957A", "-6962A", "A7712G", "A8576G"], "INT": ["D11E"], "RT-p51": ["A158S"], "RT-p66": ["A158S"], "gp120": ["N143K", "I156T", "N161G", "E240K", "S253G", "-368D"], "gp41": ["S125I", "K137E"], "p17": ["A54S"], "p2": ["N11A"], "vpu": ["V69N", "-76P", "-77L"]}, "labels": {"aa": "INT: D11E; RT-p51: A158S; RT-p66: A158S; gp120: N143K, I156T, N161G, E240K, S253G, -368D; gp41: S125I, K137E; p17: A54S; p2: N11A; vpu: V69N, -76P, -77L"}}, "children": [{"name": "A6_NODE_0000016", "node_attrs": {"div": 0.11223000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A1963G", "-6210G", "-6213G", "A6338G", "T6340G", "-6956G", "-6963G", "-6964C", "-6967T", "A7373C", "A8794C"], "gp120": ["N57I", "E105D", "P203T", "T255N", "D294-", "-381E", "-382T", "N437T"], "gp41": ["I24L"]}, "labels": {"aa": "gp120: N57I, E105D, P203T, T255N, D294-, -381E, -382T, N437T; gp41: I24L"}}, "children": [{"name": "A6_NODE_0000017", "node_attrs": {"div": 0.11569000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C456T", "A654C", "A762G", "G803A", "A968G", "A1073G", "G2155A", "G2459A", "G2463A", "A2710G", "C3013T", "G3221A", "G3787A", "G4060A", "A4175G", "A4806G", "C5003T", "C5180A", "A5236G", "A5462G", "G5635A", "A5865G", "T6184C", "-6203A", "-6205C", "-6218G", "-6223C", "A6276G", "T6618A", "G6881A", "T7096C", "C7134T", "T7893C", "G7992A", "G8329A", "C8507T", "G8522A", "G8970A", "C8971G"], "INT": ["E3D", "N134D"], "RT-p51": ["E122K", "A376T"], "RT-p66": ["E122K", "A376T"], "gp120": ["T110-", "S111-", "S112-", "N113-", "S114-", "S115-", "S116-", "K141R", "N312S", "V343I", "-372V", "T427I"], "gp41": ["V197A", "G230D"], "nef": ["K178R"], "p17": ["I107L"], "p2": ["-12N"], "tat": ["K29R"], "vpr": ["L26I"], "vpu": ["V10I", "V67M"]}, "labels": {"aa": "INT: E3D, N134D; RT-p51: E122K, A376T; RT-p66: E122K, A376T; gp120: T110-, S111-, S112-, N113-, S114-, S115-, S116-, K141R, N312S, V343I, -372V, T427I; gp41: V197A, G230D; nef: K178R; p17: I107L; p2: -12N; tat: K29R; vpr: L26I; vpu: V10I, V67M"}}, "children": [{"name": "MH330340", "node_attrs": {"div": 0.14641, "accession": "MH330340", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2013.0}, "Strain_name": {"value": "ARH036"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G196A", "T200-", "C201-", "G202-", "A203-", "A204-", "G208-", "A209-", "A210-", "A211-", "G212-", "T213-", "T214-", "C218-", "C219-", "A220-", "G221-", "A222-", "G223-", "A224-", "A225-", "G226-", "T227-", "T228-", "C229-", "T230-", "C231-", "T232-", "C233-", "G234-", "A235-", "A388G", "A412G", "A417C", "C426A", "C467T", "A491G", "C516T", "C590T", "A619G", "T636G", "C679A", "C680T", "G717A", "G755A", "G776A", "G837A", "T838C", "C872A", "T1001C", "G1016A", "G1078C", "C1115T", "G1192A", "A1226G", "T1253A", "G1256A", "T1322C", "A1449G", "A1450G", "A1461G", "A1586G", "C1613T", "A1691G", "G1697A", "G1733A", "A1742G", "C1850G", "A1900C", "C1960T", "G1972A", "A1993G", "A2029G", "A2032G", "C2105T", "G2134A", "G2182A", "A2211G", "G2212A", "A2233G", "T2302A", "T2315C", "G2387T", "G2389T", "A2524G", "G2530A", "T2567G", "T2597C", "G2602T", "T2612G", "T2613C", "A2618T", "C2635T", "C2665T", "G2683A", "A2686G", "A2698G", "T2708C", "C2797T", "C2885T", "A2920G", "C2944T", "G2974A", "C2978T", "G3015A", "T3022C", "A3025C", "G3136A", "A3142G", "G3409A", "G3439A", "T3445C", "A3449C", "A3529G", "C3545T", "T3550C", "T3551C", "C3589T", "G3630A", "T3755A", "G3772A", "A3784T", "A3816G", "T3865C", "T3922A", "T3976C", "A4108G", "G4146A", "G4195A", "G4276T", "A4402G", "C4428T", "C4679T", "C4690T", "G4693A", "A4696G", "G4727A", "A4748G", "A4781G", "A4784T", "C4807T", "A4861G", "A4862C", "C4890A", "C4967T", "T4969G", "T4991C", "C4992T", "T5028C", "T5147C", "A5159G", "A5167G", "C5168T", "T5179G", "A5233G", "T5314C", "C5358A", "A5359G", "G5371C", "T5424C", "A5460G", "G5471T", "A5537C", "G5561A", "C5569T", "C5578T", "A5581G", "C5599A", "A5602C", "A5623G", "T5645C", "C5654T", "A5656G", "T5688G", "A5689T", "T5704A", "G5706A", "C5795T", "G5806A", "C5826T", "T5834C", "G5851A", "G5861A", "A5908G", "T5911G", "G5915A", "G5917A", "T5944C", "A5965G", "A5995G", "A6009G", "T6025G", "T6026A", "G6037A", "A6065G", "C6067T", "A6085T", "C6116T", "T6134C", "C6148T", "C6170-", "C6171-", "C6172-", "A6173-", "A6174-", "C6175-", "A6176-", "G6177-", "C6178-", "A6179-", "C6180-", "T6181-", "A6182C", "G6183C", "C6186T", "T6187C", "-6201T", "-6204G", "-6207A", "G6210A", "-6211T", "-6214T", "-6215T", "-6216T", "-6217G", "-6219G", "-6220G", "-6221G", "-6222A", "A6225T", "G6227-", "A6228-", "A6229-", "C6256T", "C6263G", "A6282C", "T6295C", "A6304G", "G6324A", "A6354G", "G6368A", "G6457T", "T6460G", "A6461G", "T6466A", "C6511T", "G6571A", "C6636A", "T6637G", "C6641G", "A6753G", "G6779A", "C6780A", "T6794C", "A6800C", "G6819A", "A6822G", "A6823G", "A6855G", "C6859T", "C6951T", "-6958A", "-6961C", "A6962G", "C6966A", "-6980G", "-6981T", "-6982C", "G6998A", "C7020A", "G7054A", "A7090T", "A7095G", "C7127A", "G7190A", "G7197A", "A7269G", "T7309C", "C7354T", "G7390A", "G7459A", "A7492G", "A7533G", "C7544A", "A7549G", "G7627A", "A7628G", "T7630G", "T7642G", "A7676T", "A7691C", "G7700A", "A7764G", "T7796A", "T7805C", "A7936C", "C7937A", "A7938G", "G7964A", "A7998G", "G8005C", "A8014G", "G8050A", "C8062T", "A8076G", "C8123T", "G8171A", "G8172A", "A8188G", "G8212A", "G8317A", "A8328G", "A8361C", "A8402G", "A8424C", "T8480A", "A8531T", "A8584T", "T8595C", "A8666C", "G8793A", "C8855T", "A8874C", "G8882A", "T8887G", "G8909A", "C8917A", "G8929A", "C8966A", "A8967C", "C9075T"], "INT": ["K14R", "S124N", "E167D", "T218I"], "RT-p51": ["P4S", "K39R", "A98S", "S123N", "S158A", "E169D", "L173A", "N175Y", "R307K"], "RT-p66": ["P4S", "K39R", "A98S", "S123N", "S158A", "E169D", "L173A", "N175Y", "R307K", "I452L", "R512K"], "gp120": ["E4G", "D19E", "E21K", "N52S", "I57M", "L58M", "N71D", "Q77H", "D105-", "P106-", "N108-", "M126P", "L137V", "K143T", "-159S", "S162Q", "N167S", "A172T", "K201N", "D202E", "T203A", "N204K", "K240E", "T261K", "P263A", "-294A", "K300R", "T308A", "A309K", "K316Q", "R322K", "K323R", "K334R", "T366I", "D368E", "S370G", "T371N", "-373T", "-383N", "-384E", "-385T", "P389Q", "R412S", "N414S", "L425I", "-433S", "N434S", "S436E", "E438-", "T439-", "D446N", "R448K", "K472R"], "gp41": ["K77R", "L81I", "D109E", "D113E", "I125F", "I130L", "D133N", "K154R", "S165T", "H212S", "D232G", "H258R", "G290K", "K342R"], "nef": ["K7Q", "I20M", "S46R", "E63D", "Y81F", "F85L", "E108D", "A151T", "M182R", "R196Q"], "p17": ["K18R", "K26R", "K28Q", "K95R", "L101V", "T115N", "V128I"], "p2": ["N9G", "I13V"], "p24": ["M15I", "V36T", "G116A", "R154K"], "p6": ["I21M"], "pro": ["Q18E", "E34D"], "rev": ["T8P", "V16I", "T30Q", "D53H", "S56G", "A68T", "P72S", "S92F", "G108E", "T114A"], "tat": ["W32L", "H54P", "S62N", "H65Y", "P68S", "I69V", "H76P", "T77A"], "vif": ["A35V", "R36K", "T74V", "K92G", "L102M", "I128R", "P136S"], "vpr": ["Y15H", "M19V", "D25E", "Q85R", "G89A"], "vpu": ["I6V", "V13A", "I17V", "I28L", "L33I", "T63I", "-70Y", "-71V", "V82M"]}, "labels": {"aa": "INT: K14R, S124N, E167D, T218I; RT-p51: P4S, K39R, A98S, S123N, S158A, E169D, L173A, N175Y, R307K; RT-p66: P4S, K39R, A98S, S123N, S158A, E169D, L173A, N175Y, R307K, I452L, R512K; gp120: E4G, D19E, E21K, N52S, I57M, L58M, N71D, Q77H, D105-, P106-, N108-, M126P, L137V, K143T, -159S, S162Q, N167S, A172T, K201N, D202E, T203A, N204K, K240E, T261K, P263A, -294A, K300R, T308A, A309K, K316Q, R322K, K323R, K334R, T366I, D368E, S370G, T371N, -373T, -383N, -384E, -385T, P389Q, R412S, N414S, L425I, -433S, N434S, S436E, E438-, T439-, D446N, R448K, K472R; gp41: K77R, L81I, D109E, D113E, I125F, I130L, D133N, K154R, S165T, H212S, D232G, H258R, G290K, K342R; nef: K7Q, I20M, S46R, E63D, Y81F, F85L, E108D, A151T, M182R, R196Q; p17: K18R, K26R, K28Q, K95R, L101V, T115N, V128I; p2: N9G, I13V; p24: M15I, V36T, G116A, R154K; p6: I21M; pro: Q18E, E34D; rev: T8P, V16I, T30Q, D53H, S56G, A68T, P72S, S92F, G108E, T114A; tat: W32L, H54P, S62N, H65Y, P68S, I69V, H76P, T77A; vif: A35V, R36K, T74V, K92G, L102M, I128R, P136S; vpr: Y15H, M19V, D25E, Q85R, G89A; vpu: I6V, V13A, I17V, I28L, L33I, T63I, -70Y, -71V, V82M"}}}, {"name": "MH330347", "node_attrs": {"div": 0.14148000000000002, "accession": "MH330347", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2012.0}, "Strain_name": {"value": "BLG015"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T301A", "A303G", "G305T", "C362T", "G378A", "C434T", "A512G", "G519A", "A521C", "C535T", "C558G", "A585G", "C586T", "C606T", "G607A", "G608T", "A613G", "A714C", "A842T", "G860A", "T944C", "T978A", "T979C", "G987A", "A1017C", "A1089G", "G1173A", "T1174C", "A1205G", "C1211T", "C1220T", "C1350T", "T1444C", "T1451C", "A1474G", "G1718A", "C1785T", "A1786G", "A1794T", "A1835G", "A1841G", "C1903A", "T1986C", "A2014T", "G2273A", "A2462G", "G2473A", "T2488C", "A2614G", "A2626T", "A2809G", "T2829C", "G2830A", "G2925A", "G2932A", "G2951A", "G2980A", "C3023T", "T3052C", "A3058G", "T3067C", "C3178T", "G3206T", "G3250A", "A3454G", "A3607G", "G3631A", "G3709A", "A3756C", "T3757A", "G3768A", "A3784C", "G3859T", "T3962G", "A4000G", "A4255G", "A4376G", "A4591C", "G4695C", "T4730C", "A4735G", "C4761T", "A4773T", "C4833A", "T4840C", "G4860A", "G4959T", "G4995A", "G5036A", "G5226C", "A5246G", "T5293G", "T5313C", "G5355A", "A5432C", "G5444C", "A5557G", "C5625T", "C5630T", "A5643C", "G5644A", "G5673A", "A5718G", "A5804G", "T5827G", "T5831C", "G5842A", "A5848G", "T5860-", "G5861-", "C5862-", "A6008G", "T6046C", "A6085G", "G6133A", "T6154A", "A6158G", "G6167C", "C6170T", "C6171T", "C6172T", "A6185T", "G6189A", "A6200G", "-6201G", "C6202T", "-6204A", "-6207G", "-6211C", "-6214C", "-6215A", "-6216G", "-6217T", "-6219A", "-6220T", "-6221A", "-6222G", "A6281C", "T6283A", "A6332G", "G6340A", "T6361C", "A6371G", "A6376C", "C6382T", "C6446G", "A6464G", "A6470T", "A6471C", "C6483T", "A6532G", "C6563T", "G6572A", "A6581G", "G6605A", "A6608C", "A6609C", "C6613A", "C6649A", "G6693A", "A6723T", "T6738C", "C6758T", "A6765C", "G6771A", "A6773G", "G6774A", "G6776A", "G6856A", "A6931C", "G6935T", "-6958T", "-6961T", "A6983G", "C6984T", "A6996G", "C6999G", "A7001G", "G7004A", "A7005G", "C7008A", "C7016T", "A7088C", "G7102T", "T7117C", "A7129C", "T7147A", "A7148G", "A7149G", "A7151G", "C7153A", "G7155A", "C7156T", "G7160A", "C7165T", "-7166G", "-7167A", "-7168G", "-7169A", "-7170C", "-7171C", "A7255G", "A7268C", "A7269T", "A7273C", "A7275G", "T7309A", "C7328A", "G7508A", "A7626T", "C7678T", "T7692C", "T7702G", "G7712C", "A7722T", "A7799C", "T7801G", "G7831A", "T7870A", "T7879C", "C7926T", "T7929C", "G7947A", "G7952A", "C8106T", "G8110A", "G8134C", "A8222C", "A8228G", "G8241A", "T8291C", "C8296T", "C8311T", "A8354T", "C8382T", "T8390A", "G8393A", "A8400C", "C8425G", "C8460T", "A8525G", "G8576A", "C8597T", "A8746T", "G8784C", "G8793T", "G8799A", "G8816A", "A8829T", "C8855A", "T8867C", "A8886G", "C8990T", "C8992A", "-8993A", "G8997-", "T9073C", "A9101G", "A9106G"], "INT": ["L63V", "I201V"], "RT-p51": ["V60I", "S123D", "E177D", "M245T", "R277K", "A286T", "V371L"], "RT-p66": ["V60I", "S123D", "E177D", "M245T", "R277K", "A286T", "V371L", "N554S", "R558K"], "gp120": ["T3G", "E4N", "N5-", "N52D", "N102D", "P106L", "-107S", "N108E", "K143Q", "T156-", "D157-", "N158-", "S160T", "M173V", "L198V", "N204D", "N206S", "P210L", "M243V", "D251N", "N252P", "N265K", "R280H", "Y290V", "A291T", "T292-", "G293-", "I295-", "H302Y", "N304T", "S306N", "R307E", "D361Y", "E381G", "T382G", "-383D", "-384R", "-385N", "R416S", "N432G", "-433G", "S436K", "K472L", "K474R"], "gp41": ["L9I", "V69I", "Q108L", "D109N", "I130T", "D133E", "E137Q", "N140I", "N166Q", "M176I", "T208I", "L209P", "G215E", "D217N", "R221G", "A268V", "I307L", "I309V", "G313E", "C330R"], "nef": ["K4N", "P14S", "I20L", "P28R", "H40Y", "Y135F", "V148L", "A151S", "V153I", "S163C", "H171Q", "M182V", "K192T"], "p17": ["A15T", "I31L", "E62N", "T67I", "L75V", "T84V", "R91Y", "E93G", "K127Q"], "p2": ["V7A"], "p24": ["L83T", "A86T", "M96L", "S120G", "V148T", "P207S"], "p6": ["H36C"], "p7": ["K3R"], "pro": ["I13V", "I15V", "D35E", "L63P"], "rev": ["R35K", "K39R", "D88N", "G96Q"], "tat": ["K19T", "S23T", "S61G", "P73S", "D80N"], "vif": ["E2A", "G37Q", "K50R", "R63W", "T74A", "H83N", "V85A", "V125L", "A137T"], "vpr": ["G41A", "N48D", "I63M", "V70A", "V84M"], "vpu": ["A8V", "L12F", "V13I", "F16S", "M65-", "E66-", "N69V", "-72G", "-73N", "-74D", "-75A", "P76L", "D79N", "N81D"]}, "labels": {"aa": "INT: L63V, I201V; RT-p51: V60I, S123D, E177D, M245T, R277K, A286T, V371L; RT-p66: V60I, S123D, E177D, M245T, R277K, A286T, V371L, N554S, R558K; gp120: T3G, E4N, N5-, N52D, N102D, P106L, -107S, N108E, K143Q, T156-, D157-, N158-, S160T, M173V, L198V, N204D, N206S, P210L, M243V, D251N, N252P, N265K, R280H, Y290V, A291T, T292-, G293-, I295-, H302Y, N304T, S306N, R307E, D361Y, E381G, T382G, -383D, -384R, -385N, R416S, N432G, -433G, S436K, K472L, K474R; gp41: L9I, V69I, Q108L, D109N, I130T, D133E, E137Q, N140I, N166Q, M176I, T208I, L209P, G215E, D217N, R221G, A268V, I307L, I309V, G313E, C330R; nef: K4N, P14S, I20L, P28R, H40Y, Y135F, V148L, A151S, V153I, S163C, H171Q, M182V, K192T; p17: A15T, I31L, E62N, T67I, L75V, T84V, R91Y, E93G, K127Q; p2: V7A; p24: L83T, A86T, M96L, S120G, V148T, P207S; p6: H36C; p7: K3R; pro: I13V, I15V, D35E, L63P; rev: R35K, K39R, D88N, G96Q; tat: K19T, S23T, S61G, P73S, D80N; vif: E2A, G37Q, K50R, R63W, T74A, H83N, V85A, V125L, A137T; vpr: G41A, N48D, I63M, V70A, V84M; vpu: A8V, L12F, V13I, F16S, M65-, E66-, N69V, -72G, -73N, -74D, -75A, P76L, D79N, N81D"}}}]}, {"name": "A6_NODE_0000018", "node_attrs": {"div": 0.11514, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A534G", "A619G", "G1487A", "A1907G", "C2075A", "C2127A", "G3439A", "G4860A", "T5147C", "A5656G", "T5708G", "G6177A", "C6180G", "A6185G", "T6196C", "-6205T", "T6283A", "T6287C", "G6327A", "A6329G", "T6337G", "G6339A", "G6457T", "G6571A", "G6572A", "A6746C", "T6747C", "C6937A", "C7008A", "G7765A", "C8065T", "G8388A"], "RT-p51": ["T11K"], "RT-p66": ["T11K"], "gp120": ["Y145H", "D157G", "-159D", "S162E", "K201N", "I298P", "D361E", "T371-", "-383S"], "nef": ["V16I", "K192T"], "p17": ["T67A", "K95R"], "pro": ["N37D", "L93I"], "rev": ["L73F"], "vpr": ["Y15H", "D25E"], "vpu": ["I17V", "L34R"]}, "labels": {"aa": "RT-p51: T11K; RT-p66: T11K; gp120: Y145H, D157G, -159D, S162E, K201N, I298P, D361E, T371-, -383S; nef: V16I, K192T; p17: T67A, K95R; pro: N37D, L93I; rev: L73F; vpr: Y15H, D25E; vpu: I17V, L34R"}}, "children": [{"name": "DQ823366", "node_attrs": {"div": 0.13426000000000002, "accession": "DQ823366", "clade_membership": {"value": "A6"}, "country": {"value": "UA"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01UAOD35"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "C435A", "A491G", "C516T", "C558A", "T602C", "C668T", "A692G", "G697A", "T771C", "G791A", "T852A", "T1148C", "G1301A", "G1452A", "C1541T", "C1595T", "C1613T", "A1673G", "A1720T", "C1721G", "T1722-", "T1723-", "T1724-", "G1725-", "G1726-", "G1727-", "A1728-", "T1729-", "G1730-", "A1786G", "A1951G", "A2056G", "T2062C", "G2155A", "A2210G", "G2212T", "G2224A", "T2488C", "A2508C", "A2551G", "C2596A", "A2626C", "A2699G", "G2914A", "G2925A", "G3220A", "A3239T", "A3280G", "C3368T", "G3442A", "A3451G", "A3756C", "A3794C", "A3834G", "T4075C", "T4691C", "A4696G", "G4782A", "G4802A", "G4870T", "G4892A", "T4914C", "G4959A", "C4992T", "G5086A", "T5179G", "T5286C", "G5371T", "A5421G", "T5442C", "G5444A", "T5467A", "G5561A", "A5576C", "A5621T", "A5622G", "A5627G", "T5653G", "C5707A", "G5805A", "T5831C", "A5865G", "A5867G", "A5959G", "G6037A", "A6066G", "C6115T", "A6132C", "A6169C", "C6170T", "C6171T", "C6172T", "C6186T", "A6191T", "G6195A", "T6199C", "-6201G", "-6203G", "-6204A", "-6207G", "A6209T", "-6211G", "A6212G", "G6213T", "-6214T", "G6277T", "A6279G", "T6310C", "G6324A", "G6425A", "C6454T", "A6461G", "C6462T", "A6471C", "G6490A", "C6499T", "G6575C", "G6668A", "G6669A", "G6693A", "A6714G", "T6720G", "C6721G", "T6735A", "T6738C", "A6765T", "G6771A", "G6776A", "A6786G", "A6809G", "T6824C", "A6833-", "A6834-", "T6835-", "-6958T", "-6961A", "G6963A", "C6964T", "-6980G", "-6981T", "-6982C", "A6987G", "G6995C", "C7024T", "A7095G", "A7099C", "A7148G", "G7190A", "C7336T", "T7462C", "A7523G", "A7533G", "A7590C", "A7626T", "A7629G", "A7691T", "T7692C", "T7702G", "T7715G", "A7772G", "G7773A", "G7790A", "A7818G", "A7852C", "A7891G", "T7893C", "T8035C", "G8036A", "C8037T", "T8164C", "G8172T", "T8203C", "A8264T", "A8328G", "C8382T", "G8393A", "A8424C", "A8458G", "T8483C", "G8588A", "G8590C", "C8640A", "C8651T", "A8652G", "A8656G", "C8661A", "G8682A", "T8740C", "A8746T", "A8770T", "A8792C", "A8869G", "T8887A", "C8913T", "A8915C", "G8923C", "A9106G", "C9108-", "-9109T"], "INT": ["K7Q", "K20R"], "RT-p51": ["K39D", "E138A", "E177D", "I202V", "R277K", "I382L"], "RT-p66": ["K39D", "E138A", "E177D", "I202V", "R277K", "I382L", "I452M", "N554S"], "gp120": ["T3A", "E4G", "N5D", "N71S", "K93T", "-107K", "-109N", "S112F", "S114N", "K141N", "K142R", "G161R", "A191T", "T203V", "N206T", "E241Q", "N255I", "G272N", "R280H", "Q287R", "F289W", "Y290V", "A291T", "T292-", "G293-", "I295-", "N304I", "S306N", "N311S", "N312S", "T319A", "Y324H", "N327-", "N369K", "S370-", "S379D", "E381V", "-384S", "-385T", "N414S", "N432G", "-433G", "N434T", "N435D", "T437S", "D446N"], "gp41": ["R74G", "K77R", "N96T", "Q108L", "D109S", "I130S", "D133E", "S138A", "S157D", "D163N", "K172R", "V197A", "R221G", "A245I", "G290V", "I321L", "K342R"], "nef": ["P14S", "K39R", "G83A", "L100I", "K104E", "K105R", "Q107K", "V114I", "I133T", "Y135F", "Y143F", "E176G", "K178R", "M182K", "L191F", "R194T"], "p17": ["K18R", "I31L", "L34I", "L75I", "G121D"], "p2": ["-10T", "A11N"], "p24": ["V11I", "S14P", "S41T"], "p6": ["N14M", "F15G", "G16-", "M17-", "G18-", "E19-", "I21E", "T22I", "-23T", "H36R"], "rev": ["V16I", "I21L", "K39R", "C63H", "S106P"], "tat": ["S23N", "C31S", "S62N", "N67T"], "vif": ["V66I", "S95I", "Y110H", "V125I", "P136S", "R167K"], "vpr": ["I61T", "G89V"], "vpu": ["E5V", "Y7C", "F16A", "-70Y", "-75A", "P76L"]}, "labels": {"aa": "INT: K7Q, K20R; RT-p51: K39D, E138A, E177D, I202V, R277K, I382L; RT-p66: K39D, E138A, E177D, I202V, R277K, I382L, I452M, N554S; gp120: T3A, E4G, N5D, N71S, K93T, -107K, -109N, S112F, S114N, K141N, K142R, G161R, A191T, T203V, N206T, E241Q, N255I, G272N, R280H, Q287R, F289W, Y290V, A291T, T292-, G293-, I295-, N304I, S306N, N311S, N312S, T319A, Y324H, N327-, N369K, S370-, S379D, E381V, -384S, -385T, N414S, N432G, -433G, N434T, N435D, T437S, D446N; gp41: R74G, K77R, N96T, Q108L, D109S, I130S, D133E, S138A, S157D, D163N, K172R, V197A, R221G, A245I, G290V, I321L, K342R; nef: P14S, K39R, G83A, L100I, K104E, K105R, Q107K, V114I, I133T, Y135F, Y143F, E176G, K178R, M182K, L191F, R194T; p17: K18R, I31L, L34I, L75I, G121D; p2: -10T, A11N; p24: V11I, S14P, S41T; p6: N14M, F15G, G16-, M17-, G18-, E19-, I21E, T22I, -23T, H36R; rev: V16I, I21L, K39R, C63H, S106P; tat: S23N, C31S, S62N, N67T; vif: V66I, S95I, Y110H, V125I, P136S, R167K; vpr: I61T, G89V; vpu: E5V, Y7C, F16A, -70Y, -75A, P76L"}}}, {"name": "DQ823357", "node_attrs": {"div": 0.13305, "accession": "DQ823357", "clade_membership": {"value": "A6"}, "country": {"value": "UA"}, "date": {"value": 2001.0}, "Strain_name": {"value": "01UADN139"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C426A", "G480A", "T495G", "C583T", "C634G", "C680A", "A683G", "G687T", "C734T", "T763C", "G860A", "T1358C", "T1444C", "A1449G", "A1450G", "A1835G", "A1839G", "T1868C", "G2182A", "A2243G", "C2280T", "A2300T", "G2389A", "G2463A", "T2506C", "G2518A", "A3020C", "A3142G", "G3173A", "G3250A", "C3485A", "T3493G", "A3520G", "A3629C", "G3630A", "A3706G", "A3727T", "T3755G", "T3976C", "A4069T", "G4112A", "C4141T", "T4165C", "T4234C", "A4519G", "A4622G", "G4685A", "A4688G", "G4695A", "T4701G", "G4708A", "G4726T", "G4727A", "C4728A", "T4742C", "C4967A", "T5016C", "C5056T", "G5075A", "C5115T", "T5179A", "A5233G", "G5363A", "C5398A", "G5418A", "A5462G", "A5493G", "A5537C", "A5548G", "C5578A", "G5629A", "A5659T", "G5668T", "A5680G", "T5681C", "G5739A", "A5804G", "T5834C", "G5861A", "G5881A", "C5923T", "C5968T", "A6023C", "T6024C", "C6052T", "G6121A", "T6134C", "G6167A", "A6174C", "C6175G", "C6178T", "A6179T", "G6183C", "T6187A", "A6188T", "G6189C", "A6194T", "G6198C", "-6201T", "-6203T", "-6204C", "-6207A", "-6211C", "-6214C", "-6215T", "-6216T", "-6217G", "-6218T", "-6219A", "-6220T", "-6221G", "-6222A", "-6223A", "G6227-", "A6228-", "A6229-", "A6234G", "C6256A", "A6275G", "A6335G", "A6465C", "G6481A", "A6489G", "A6574T", "C6601T", "T6618A", "G6716A", "T6733A", "G6734A", "G6743A", "C6777T", "G6789A", "C6810T", "T6849C", "A6957G", "-6958C", "-6961T", "A6962G", "-6968A", "-6969T", "-6970C", "-6971A", "A6983-", "G6998A", "A7002G", "G7102T", "A7107T", "A7158C", "T7182C", "A7238G", "T7309A", "G7340A", "A7342T", "G7366A", "C7463T", "A7470G", "C7498A", "G7608A", "A7617G", "G7627T", "A7628G", "G7640A", "A7701G", "G7712A", "A7782G", "G7964A", "A7970G", "T8007C", "C8062T", "C8095A", "G8098A", "G8144A", "A8195G", "A8213C", "A8264G", "C8494A", "G8554A", "A8617G", "A8653G", "C8699A", "A8801G", "A8859G", "A8873G", "G8875A", "A8876G", "A8879G", "T8912G", "G8923T", "C8934A", "T8935A", "G8970A", "C8971G", "T9073C", "C9078A"], "INT": ["V113I", "S283G"], "RT-p51": ["I50V", "A62V", "T69S", "S123N", "I309L", "A360T"], "RT-p66": ["I50V", "A62V", "T69S", "S123N", "I309L", "A360T", "Q464K", "R512Q", "N554D"], "gp120": ["I57P", "D105K", "-107T", "-109C", "S111I", "S116L", "-117Y", "-118E", "K127R", "K141E", "N204T", "K212R", "K240N", "A288T", "-294E", "D297N", "T308V", "T319I", "I332T", "D368G", "N369E", "S370N", "-371G", "-372T", "-373I", "-374T", "-384E", "-385N", "R416S", "E418V", "N432T", "N435S", "I443T", "K462E"], "gp41": ["G13S", "K56R", "S102N", "N105S", "Q108H", "D113N", "D133G", "E137K", "N160S", "K223E", "I235T", "G281S", "S298G", "I304L", "I321V"], "nef": ["P28T", "T51N", "R71K", "K92R", "K104R", "M173V", "R194I", "L198K"], "p17": ["G49S", "S54A", "A83V", "A100G", "A118S"], "p2": ["V7A", "N9G", "-12N"], "p24": ["V11T"], "p6": ["H36Q"], "pro": ["I13V", "K14R"], "rev": ["T8P", "Q41R", "P72S", "L83I", "D84N", "G99E", "E116G"], "tat": ["L8I", "K29R", "H54P", "T58A", "P68T"], "vif": ["G37K", "F39V", "R41K", "R47I", "H48N", "H127Q", "S144P", "T157I", "P177S"], "vpr": ["A4V"], "vpu": ["A8T", "F16S", "I18L", "V21F", "I25A", "M65-", "E66-", "V67M", "N69V", "-72G", "-73N", "-74Y", "-75V"]}, "labels": {"aa": "INT: V113I, S283G; RT-p51: I50V, A62V, T69S, S123N, I309L, A360T; RT-p66: I50V, A62V, T69S, S123N, I309L, A360T, Q464K, R512Q, N554D; gp120: I57P, D105K, -107T, -109C, S111I, S116L, -117Y, -118E, K127R, K141E, N204T, K212R, K240N, A288T, -294E, D297N, T308V, T319I, I332T, D368G, N369E, S370N, -371G, -372T, -373I, -374T, -384E, -385N, R416S, E418V, N432T, N435S, I443T, K462E; gp41: G13S, K56R, S102N, N105S, Q108H, D113N, D133G, E137K, N160S, K223E, I235T, G281S, S298G, I304L, I321V; nef: P28T, T51N, R71K, K92R, K104R, M173V, R194I, L198K; p17: G49S, S54A, A83V, A100G, A118S; p2: V7A, N9G, -12N; p24: V11T; p6: H36Q; pro: I13V, K14R; rev: T8P, Q41R, P72S, L83I, D84N, G99E, E116G; tat: L8I, K29R, H54P, T58A, P68T; vif: G37K, F39V, R41K, R47I, H48N, H127Q, S144P, T157I, P177S; vpr: A4V; vpu: A8T, F16S, I18L, V21F, I25A, M65-, E66-, V67M, N69V, -72G, -73N, -74Y, -75V"}}}]}]}, {"name": "A6_NODE_0000019", "node_attrs": {"div": 0.11251000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C426A", "T763C", "T5292C", "T6024A", "G6189A", "G6324A", "A6461C", "G7375A", "A7629G", "G7831A"], "RT-p66": ["N554Y"], "gp120": ["-159N", "T255I", "T308A", "S379-", "T380-", "-433S"], "gp41": ["D109S"], "nef": ["P28I"], "p24": ["V11T"], "vif": ["G37E", "K92E"], "vpr": ["I63T"]}, "labels": {"aa": "RT-p66: N554Y; gp120: -159N, T255I, T308A, S379-, T380-, -433S; gp41: D109S; nef: P28I; p24: V11T; vif: G37E, K92E; vpr: I63T"}}, "children": [{"name": "A6_NODE_0000020", "node_attrs": {"div": 0.11366000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C2203A", "T3067A", "C4967A", "T5834C", "A6131C", "C6180-", "T6181-", "C6208-", "A6209-", "A6212-", "T6735A", "G6789A", "-6964T", "-6980G", "-6981A", "-6982C", "A7238G"], "RT-p51": ["D36E", "D324E"], "RT-p66": ["D36E", "D324E"], "gp120": ["-374N", "-375E", "N378-", "K462E"], "p6": ["H36Q"], "vif": ["H127Q"]}, "labels": {"aa": "RT-p51: D36E, D324E; RT-p66: D36E, D324E; gp120: -374N, -375E, N378-, K462E; p6: H36Q; vif: H127Q"}}, "children": [{"name": "A6_NODE_0000021", "node_attrs": {"div": 0.11654, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A513C", "G518A", "C606A", "A619G", "T852A", "T1175C", "G2463A", "C4992T", "G5060A", "G5185A", "A5627G", "T5628G", "A5656G", "G5861A", "A6169C", "C6186A", "A6371G", "A6616G", "C6636A", "T6637G", "A6809G", "C6810A", "-6961T", "-6963G", "-6967T", "G6998A", "A7689G", "T7796A", "G7992A", "A8080C", "G8196A", "G8875A"], "gp120": ["K93Q", "S115E", "E125-", "M126-", "M173V", "T261K", "T319E"], "gp41": ["S165T", "S298N"], "p17": ["I60L", "K95R"], "p24": ["S41T"], "rev": ["I78L"], "vif": ["P136S"], "vpu": ["Y7W", "F16S", "-70Y"]}, "labels": {"aa": "gp120: K93Q, S115E, E125-, M126-, M173V, T261K, T319E; gp41: S165T, S298N; p17: I60L, K95R; p24: S41T; rev: I78L; vif: P136S; vpu: Y7W, F16S, -70Y"}}, "children": [{"name": "MT370005", "node_attrs": {"div": 0.1472, "accession": "MT370005", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2017.0}, "Strain_name": {"value": "RU_ERS_1417_2017"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A278G", "-280G", "G378A", "C456T", "T485G", "A509G", "T549A", "C558G", "C587T", "A654T", "G667A", "A762G", "C763T", "C830T", "G866A", "T1002C", "T1003A", "G1277A", "A1327G", "C1330A", "C1385T", "G1404A", "T1444C", "G1452A", "T1478C", "C1490A", "G1508A", "C1595A", "G1619A", "A1673G", "G1718A", "A1720T", "T1723G", "A1786G", "A1794G", "C1825T", "C1826G", "A1835G", "A1841G", "A1855G", "A1857G", "C1979G", "A2002G", "T2062C", "T2064C", "C2075A", "T2080C", "C2127A", "C2199T", "A2210G", "A2230G", "A2243G", "T2281C", "C2296T", "A2297G", "A2422G", "G2428A", "T2499C", "A2545C", "C2605A", "A2626C", "G2647A", "T2668G", "A2686G", "A2693G", "A2710G", "A2713G", "T2770C", "A2809G", "T2908C", "G2925A", "A3027G", "T3034A", "A3067G", "G3127A", "A3165C", "C3204G", "G3206T", "G3293A", "C3352T", "G3379A", "T3399C", "G3409A", "T3424C", "C3504A", "C3542T", "C3668T", "G3709A", "T3793C", "A3834G", "A3866G", "G3869C", "A3890C", "T3922A", "T3946C", "A3995T", "T4039G", "G4112A", "A4175G", "A4178G", "T4216C", "G4243A", "G4276T", "G4573A", "T4742C", "G4775A", "C4776A", "A4786C", "G4860A", "T4914C", "G5036A", "C5056A", "C5091T", "G5140A", "T5147C", "A5223T", "A5269G", "A5278G", "T5286C", "T5448A", "C5454T", "A5482G", "A5539C", "C5544T", "A5576C", "A5587G", "G5605A", "T5606-", "A5611T", "A5621C", "C5625T", "T5645C", "T5651C", "G5652A", "T5657G", "T5684C", "G5686C", "G5687T", "G5739A", "C5769A", "C5778T", "G5781A", "G5783A", "A5787G", "C5795A", "A5800G", "C5826T", "C5862T", "C5924T", "A5959G", "A6008G", "A6020G", "A6023G", "G6029A", "C6097T", "C6148T", "A6158G", "A6164G", "C6165T", "G6167A", "C6171T", "G6177T", "C6178T", "-6180A", "-6181C", "G6183A", "T6184C", "A6189C", "C6190A", "A6192T", "C6193T", "G6195A", "T6196A", "G6198A", "T6199C", "-6201A", "-6203G", "-6204A", "-6205G", "-6207G", "-6208C", "-6209T", "-6210T", "-6211G", "-6221T", "-6222A", "-6223T", "C6241T", "C6250T", "A6268G", "A6275C", "T6283A", "G6314A", "T6317G", "A6324G", "A6332G", "T6341A", "G6345A", "A6346T", "G6392A", "G6403T", "A6465C", "C6499T", "G6572A", "A6573G", "G6575A", "G6612C", "A6617G", "A6659G", "T6660C", "G6669C", "G6693C", "T6694A", "A6714G", "T6738C", "A6822C", "T6875A", "G6881A", "A6926T", "A6931C", "A6936C", "A6957-", "A6962G", "T6964C", "G6995C", "C7008T", "G7033A", "G7102T", "A7107T", "A7126C", "A7138G", "T7147A", "A7148G", "A7149G", "A7151G", "C7153A", "G7155C", "G7160A", "G7162C", "C7164G", "-7166G", "-7167A", "-7168G", "-7169A", "-7170C", "-7171C", "G7190A", "C7217T", "G7238C", "A7533G", "A7590G", "C7625T", "G7627T", "G7669A", "A7676T", "G7712C", "A7722C", "T7757C", "C7792T", "A7816T", "A7818G", "A7831G", "T7879A", "T7893C", "A7936G", "G7991C", "C7999A", "G8136T", "G8185A", "A8213T", "A8215T", "A8222C", "T8276A", "T8293C", "A8372G", "G8373-", "T8374-", "G8375-", "C8382T", "G8388A", "A8424C", "A8458G", "C8477T", "T8480A", "T8504C", "G8576A", "G8588A", "G8590C", "G8624T", "T8636A", "A8647G", "C8648G", "A8656G", "C8676T", "A8770T", "A8797T", "C8840T", "G8870A", "A8873G", "G8945T", "C8951T", "G8970-", "G9007A", "T9018-", "C9093T", "A9106G", "-9109G"], "INT": ["K20R", "I31V", "V32L", "S39R", "I74L", "V113I", "N134D", "I135V", "E167D"], "RT-p51": ["T11K", "T35I", "K39E", "I50V", "S68G", "S123N", "I135T", "E177D", "M184I", "T200A", "R277K", "K311R", "K357T", "A370G", "V371L", "A400T", "V435A"], "RT-p66": ["T11K", "T35I", "K39E", "I50V", "S68G", "S123N", "I135T", "E177D", "M184I", "T200A", "R277K", "K311R", "K357T", "A370G", "V371L", "A400T", "V435A", "T470N", "H483Y"], "gp120": ["T3I", "N52D", "I56V", "N57D", "E59K", "N102D", "T104V", "E105N", "P106L", "-107N", "-109N", "S111I", "S112K", "S114N", "-117L", "-118Y", "-119E", "-120E", "-121M", "K141Q", "V154I", "S155A", "T156-", "D157-", "N158-", "N159-", "S160T", "V180I", "E183D", "N204T", "K240R", "E241K", "G253A", "I255V", "I269A", "G272A", "R280P", "Q287R", "Y290V", "A291T", "T292-", "G293-", "D294-", "I295-", "K323T", "L341I", "V343I", "N358Y", "D361A", "D368N", "-372Q", "-373T", "-376I", "R416S", "E418V", "N432G", "S433T", "N437S", "D446N", "E462Q"], "gp41": ["K77R", "N96S", "Q108Y", "I125F", "N129S", "E137Q", "N140T", "K172R", "V197A", "R221G", "G230H", "D232E", "G278S", "I304F", "I307L", "F325I"], "nef": ["I10M", "V11-", "P14S", "V16I", "I28P", "K39R", "S46R", "G83A", "K94N", "D98E", "Y102W", "K105R", "Y143F", "A151D", "E152V", "K192T", "E201D"], "p17": ["A15T", "S72T", "L75V", "I107L", "S111N"], "p2": ["V7A", "-10T", "A11N"], "p24": ["T11V", "F91H", "K199R", "T200N", "G225S"], "p6": ["N14I", "F15C", "Q36R", "P49L"], "pro": ["L10V", "I13V", "I15V", "K20R", "Q61E", "M89T", "L93I"], "rev": ["A10V", "I21L", "T30A", "K39R", "R48T", "Q51K", "G113R"], "tat": ["N24K", "I36V", "N67T", "K71E", "H76R"], "vif": ["L64I", "K67T", "E92K", "Y110H", "T157K", "G185E"], "vpr": ["Y15H", "H40L", "I61T"], "vpu": ["T2S", "E5A", "V13A", "V15A", "I17G", "V26A", "G27L", "T63K", "M65V", "-71V"]}, "labels": {"aa": "INT: K20R, I31V, V32L, S39R, I74L, V113I, N134D, I135V, E167D; RT-p51: T11K, T35I, K39E, I50V, S68G, S123N, I135T, E177D, M184I, T200A, R277K, K311R, K357T, A370G, V371L, A400T, V435A; RT-p66: T11K, T35I, K39E, I50V, S68G, S123N, I135T, E177D, M184I, T200A, R277K, K311R, K357T, A370G, V371L, A400T, V435A, T470N, H483Y; gp120: T3I, N52D, I56V, N57D, E59K, N102D, T104V, E105N, P106L, -107N, -109N, S111I, S112K, S114N, -117L, -118Y, -119E, -120E, -121M, K141Q, V154I, S155A, T156-, D157-, N158-, N159-, S160T, V180I, E183D, N204T, K240R, E241K, G253A, I255V, I269A, G272A, R280P, Q287R, Y290V, A291T, T292-, G293-, D294-, I295-, K323T, L341I, V343I, N358Y, D361A, D368N, -372Q, -373T, -376I, R416S, E418V, N432G, S433T, N437S, D446N, E462Q; gp41: K77R, N96S, Q108Y, I125F, N129S, E137Q, N140T, K172R, V197A, R221G, G230H, D232E, G278S, I304F, I307L, F325I; nef: I10M, V11-, P14S, V16I, I28P, K39R, S46R, G83A, K94N, D98E, Y102W, K105R, Y143F, A151D, E152V, K192T, E201D; p17: A15T, S72T, L75V, I107L, S111N; p2: V7A, -10T, A11N; p24: T11V, F91H, K199R, T200N, G225S; p6: N14I, F15C, Q36R, P49L; pro: L10V, I13V, I15V, K20R, Q61E, M89T, L93I; rev: A10V, I21L, T30A, K39R, R48T, Q51K, G113R; tat: N24K, I36V, N67T, K71E, H76R; vif: L64I, K67T, E92K, Y110H, T157K, G185E; vpr: Y15H, H40L, I61T; vpu: T2S, E5A, V13A, V15A, I17G, V26A, G27L, T63K, M65V, -71V"}}}, {"name": "KU749399", "node_attrs": {"div": 0.14361000000000002, "accession": "KU749399", "clade_membership": {"value": "A6"}, "country": {"value": "UA"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMA111UA002"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T94C", "C96T", "A101G", "A166-", "T200C", "A286G", "A304G", "G305A", "A428T", "G452A", "C531T", "A534G", "G542T", "G579A", "T662G", "C713T", "A714C", "G803A", "G860A", "C902T", "T978A", "T979C", "A1025T", "T1037C", "C1094T", "C1115A", "G1151A", "T1262C", "A1329G", "A1442G", "A1449C", "T1511C", "C1514T", "A1592G", "A1643G", "C1692A", "T1724C", "A1839G", "G1998A", "T2087C", "A2154G", "A2170C", "A2211G", "A2222G", "T2245A", "T2257C", "C2299T", "A2341G", "G2431A", "C2464A", "T2612G", "T2613C", "G2630A", "G2707A", "A2794G", "C2818A", "G2833A", "G2974A", "C2978A", "G3044A", "T3045C", "T3059A", "A3061G", "A3151G", "A3192G", "C3194G", "A3226C", "G3250A", "G3398A", "G3463T", "T3466C", "G3508A", "T3526G", "C3545T", "C3649T", "A3654G", "T3754C", "T3755C", "A3808T", "A3985C", "C4180T", "T4405C", "G4516A", "G4677A", "T4702C", "A4720C", "C4776T", "G4802A", "T4805G", "C4826T", "A4968G", "G4982A", "G4995A", "C5003T", "A5057G", "T5206C", "G5215A", "C5237T", "A5284G", "A5361-", "G5362-", "G5363-", "A5366G", "G5370A", "C5372A", "G5471T", "A5482C", "C5511T", "A5537G", "A5547G", "C5552A", "G5561A", "T5636C", "G5737A", "-5812G", "A5824-", "T5831C", "A5845G", "A5848G", "G5872A", "G5881A", "T5944C", "C6010T", "A6024G", "A6030G", "G6071A", "A6085G", "T6155C", "T6160G", "A6173-", "A6174-", "C6175-", "A6176-", "G6177-", "C6178-", "A6179-", "G6183C", "T6187C", "A6194T", "G6195C", "A6197-", "G6198-", "T6199-", "A6200-", "C6202-", "A6206-", "A6228T", "A6281G", "A6282C", "T6295A", "T6317C", "G6327A", "A6329G", "G6333A", "G6368A", "C6461A", "C6462A", "A6520G", "A6574T", "T6618C", "C6649T", "C6670T", "C6673T", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6723T", "A6754C", "G6779A", "A6800C", "A6833C", "A6854G", "A6858G", "A6868T", "A6936G", "C6949T", "-6956G", "-6958C", "-6968T", "-6969G", "-6970G", "C6984A", "A6994T", "A6996T", "G6997C", "C7000A", "A7005G", "A7006C", "T7009C", "C7020A", "G7026A", "A7044G", "T7045G", "G7101A", "G7106A", "A7107C", "C7134T", "G7155A", "T7180G", "T7182C", "G7198A", "G7199A", "C7201T", "A7241G", "G7256A", "A7307G", "C7354T", "T7403C", "G7405A", "G7417A", "A7426G", "T7433C", "T7604G", "C7605T", "A7628C", "G7629A", "T7630G", "T7681C", "C7684T", "A7688G", "A7706C", "G7712A", "T7747A", "T7762C", "A7782G", "A7826G", "T7913G", "C7937A", "G7947A", "G7964A", "A7970G", "G7997A", "A7998C", "A8011C", "C8033G", "C8037T", "T8047C", "A8076G", "C8097T", "G8134C", "A8152G", "A8213C", "G8216A", "T8223C", "C8232T", "G8329C", "G8398A", "G8407A", "C8425G", "A8435T", "C8436T", "A8474C", "T8480C", "G8490A", "C8491A", "T8492G", "G8519A", "T8595C", "A8662G", "C8699A", "C8751A", "A8794C", "A8798T", "A8813G", "C8849T", "T8903C", "C8917A", "G8929A", "T9051A", "T9179C"], "INT": ["E11D"], "RT-p51": ["K20R", "K39R", "K43E", "S123K", "L173A", "V179I", "L295M", "V317T", "S322T", "K366R", "Q367E", "V435I"], "RT-p66": ["K20R", "K39R", "K43E", "S123K", "L173A", "V179I", "L295M", "V317T", "S322T", "K366R", "Q367E", "V435I", "K520R", "Y554H"], "gp120": ["N57S", "E59G", "V73I", "N102K", "E105D", "N108-", "S111N", "S112N", "S116V", "-117M", "K143A", "S155P", "N159D", "S160N", "G161S", "A172T", "P203K", "K240D", "I255T", "S278G", "R280H", "Y290F", "K300N", "A309T", "K316Q", "-326H", "N328-", "K334E", "N335S", "D361G", "-372W", "-373D", "N374T", "-384D", "-385N", "P389Q", "R391K", "N397R", "R416K", "E418T", "T427I", "S433G", "I443T", "D449N", "I463V", "V468I"], "gp41": ["I2V", "S101V", "S109Q", "N129G", "I135L", "E137K", "D148E", "N160S", "I175V", "M176I", "L204V", "H212N", "G215E", "K223E", "G230D", "D232T", "L244V", "A245V", "H258R", "S265L", "I304L", "D305N", "I307T", "A310V", "K342N"], "nef": ["R19K", "R22Q", "I28R", "P32S", "A50K", "F85L", "Q107R", "L137I", "E152D", "R196Q"], "p17": ["P66S", "T67A", "K69N", "V82I", "N109K", "K127Q"], "p2": ["N9H", "-12N"], "p24": ["L83T", "E98D", "D128E", "T200A"], "p6": ["P5T"], "pro": ["K14R", "C67Y"], "rev": ["T8A", "E11G", "L13I", "V16I", "T30K", "Q41R", "R50N", "I55L", "T62S", "S67P", "G96Q", "I102V"], "tat": ["W32L", "I36L", "H54R", "P59H", "S62N", "H76Q", "D80N"], "vif": ["V31I", "F39S", "E45A", "H73Q", "I128V", "A137T"], "vpr": ["H45Y", "I60M", "Q85-", "R86Q", "G89R"], "vpu": ["V10A", "I17V", "E44K", "N69D", "-75A", "N80D", "N81D"]}, "labels": {"aa": "INT: E11D; RT-p51: K20R, K39R, K43E, S123K, L173A, V179I, L295M, V317T, S322T, K366R, Q367E, V435I; RT-p66: K20R, K39R, K43E, S123K, L173A, V179I, L295M, V317T, S322T, K366R, Q367E, V435I, K520R, Y554H; gp120: N57S, E59G, V73I, N102K, E105D, N108-, S111N, S112N, S116V, -117M, K143A, S155P, N159D, S160N, G161S, A172T, P203K, K240D, I255T, S278G, R280H, Y290F, K300N, A309T, K316Q, -326H, N328-, K334E, N335S, D361G, -372W, -373D, N374T, -384D, -385N, P389Q, R391K, N397R, R416K, E418T, T427I, S433G, I443T, D449N, I463V, V468I; gp41: I2V, S101V, S109Q, N129G, I135L, E137K, D148E, N160S, I175V, M176I, L204V, H212N, G215E, K223E, G230D, D232T, L244V, A245V, H258R, S265L, I304L, D305N, I307T, A310V, K342N; nef: R19K, R22Q, I28R, P32S, A50K, F85L, Q107R, L137I, E152D, R196Q; p17: P66S, T67A, K69N, V82I, N109K, K127Q; p2: N9H, -12N; p24: L83T, E98D, D128E, T200A; p6: P5T; pro: K14R, C67Y; rev: T8A, E11G, L13I, V16I, T30K, Q41R, R50N, I55L, T62S, S67P, G96Q, I102V; tat: W32L, I36L, H54R, P59H, S62N, H76Q, D80N; vif: V31I, F39S, E45A, H73Q, I128V, A137T; vpr: H45Y, I60M, Q85-, R86Q, G89R; vpu: V10A, I17V, E44K, N69D, -75A, N80D, N81D"}}}]}, {"name": "A6_NODE_0000022", "node_attrs": {"div": 0.11788000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T936C", "C1350T", "A1459G", "G1472A", "G1784-", "G2020A", "T2383C", "A2677G", "C3232T", "A4312G", "G4693A", "C4728G", "T4730G", "T4769A", "G5075A", "T5382C", "C5511T", "G5857A", "T6196C", "-6201G", "-6220G", "-6221T", "-6223T", "T6283A", "G6333A", "G6533A", "G6716A", "A6746C", "T6747C", "T6835-", "G6935A", "-6956A", "A6959G", "A6965G", "C6966A", "-6967C", "-6968A", "-6969C", "-6974A", "-6977A", "-6979T", "G7089A", "A7095T", "A7706C", "A7998G", "G8126A", "G8127A", "G8305A", "G8329A", "C8425T"], "gp120": ["T3A", "V227I", "A288T", "I298P", "D368N", "R412K", "N414I"], "gp41": ["I135L", "D232G", "G275K"], "p24": ["P207S"], "p6": ["P38S", "S39I"], "rev": ["G93E"], "vif": ["R36K", "H48E", "D61E"], "vpr": ["S93P"]}, "labels": {"aa": "gp120: T3A, V227I, A288T, I298P, D368N, R412K, N414I; gp41: I135L, D232G, G275K; p24: P207S; p6: P38S, S39I; rev: G93E; vif: R36K, H48E, D61E; vpr: S93P"}}, "children": [{"name": "KF716491", "node_attrs": {"div": 0.14657, "accession": "KF716491", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2008.0}, "Strain_name": {"value": "DEMA108RU003"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T214A", "-215G", "-216T", "-217T", "A224G", "T227C", "A304G", "G305A", "A353G", "G354A", "A417C", "G470A", "A509G", "A512G", "C516A", "A520G", "A529T", "A534T", "T596C", "C606A", "G614C", "A619G", "A660G", "G716T", "C734A", "C763T", "T771C", "G785A", "G791A", "T852A", "G860A", "G920A", "T978A", "A1025C", "C1060A", "G1151A", "A1184G", "C1211T", "A1242G", "C1243T", "G1256A", "G1301A", "A1442G", "G1487A", "A1592G", "G1640A", "A1656C", "G1657A", "A1661G", "T1676C", "A1743G", "A1781T", "A1783C", "C1785-", "A1786-", "G1845C", "A1933G", "A1963G", "C1979G", "T2062C", "A2113C", "C2127A", "A2211T", "T2257C", "C2299T", "G2332A", "C2335T", "G2350A", "A2407G", "A2419G", "G2431A", "C2485T", "T2567G", "A2579T", "A2593G", "C2694T", "G2704T", "G2755A", "A2809G", "A2827C", "T2829C", "G2830A", "C2953T", "A2989G", "G3019A", "A3027G", "G3035A", "G3071A", "A3103G", "T3207C", "A3224G", "A3280G", "A3292T", "G3379A", "T3399C", "T3412C", "C3497T", "G3523A", "A3607G", "A3644G", "A3646G", "G3684A", "G3709A", "T3755A", "A3784T", "G3877A", "C3889T", "C4021T", "T4024C", "A4175G", "A4273G", "C4540T", "G4636A", "G4642A", "A4650C", "T4702C", "G4727A", "A4769G", "A4806C", "A4816G", "A4845G", "T4868C", "C4889T", "T5016C", "C5027T", "G5215A", "C5221G", "A5246G", "C5292T", "A5301T", "T5412G", "C5454T", "A5462C", "A5482G", "G5558A", "T5653G", "T5679C", "G5686A", "G5687T", "A5702G", "A5748G", "C5778T", "G5781A", "G5783A", "T5799C", "G5839C", "C5887T", "C5923T", "A5947G", "A5958C", "A6023G", "A6024C", "A6065G", "A6066G", "A6112G", "C6131A", "A6168C", "-6180C", "-6181T", "T6184A", "A6185C", "A6188G", "T6199C", "C6202-", "A6206-", "-6222A", "A6276G", "A6279C", "T6317G", "A6335G", "G6392A", "A6456G", "A6488G", "A6489G", "G6572A", "G6578A", "G6583A", "C6636A", "T6637A", "C6649A", "C6654A", "T6660C", "G6669A", "A6689T", "T6690A", "A6691T", "G6750A", "A6751G", "C6758T", "G6779A", "A6798G", "G6802C", "A6809G", "G6819T", "T6824C", "A6833-", "A6834-", "A6855G", "A6944G", "-6958T", "-6961C", "-6963C", "-6970A", "-6971A", "-6972A", "-6973T", "-6975G", "-6976C", "-6978C", "A6996G", "C7008T", "A7032G", "A7094G", "C7164A", "C7165T", "-7166G", "-7167A", "-7168G", "-7169A", "-7170T", "-7171C", "A7241G", "A7261G", "A7275G", "C7354T", "G7440A", "G7441A", "G7517T", "T7604C", "C7605T", "A7620G", "G7633C", "A7668G", "T7675C", "G7717A", "C7723T", "T7796A", "T7825C", "A7831G", "G7921T", "G7964A", "G7992A", "A8014G", "G8017C", "C8092A", "G8116A", "A8152G", "T8206C", "G8212A", "C8232T", "A8264T", "T8276C", "T8287C", "A8367C", "A8402G", "C8460T", "T8504C", "C8510T", "G8522A", "A8531C", "G8537T", "G8554A", "G8576A", "C8597T", "G8738A", "A8739G", "T8741C", "C8789A", "C8791A", "T8795G", "G8799A", "G8814A", "A8815C", "G8816T", "A8846G", "G8870A", "T8887G", "G8905A", "C8917A", "G8929A", "G8936A", "G8942T", "T9073C", "C9078A", "A9106G"], "INT": ["E3D", "N134D"], "RT-p51": ["E6D", "T11K", "K39M", "S158A", "S162C", "T200I", "E203D", "M245T", "K311R", "V314M", "V326I", "V371A", "T377A", "E399D", "V435A"], "RT-p66": ["E6D", "T11K", "K39M", "S158A", "S162C", "T200I", "E203D", "M245T", "K311R", "V314M", "V326I", "V371A", "T377A", "E399D", "V435A", "P468S", "I517V", "R530K", "Y554N"], "gp120": ["K35T", "N57A", "N71G", "E105A", "-107N", "N108S", "-109T", "T110R", "S111P", "S112D", "S116R", "-117Y", "-118E", "K141R", "K142T", "S155A", "N158S", "S160N", "V180I", "K201R", "K212G", "V242I", "M243I", "T261K", "N265K", "T267N", "I269T", "G272D", "I279Y", "R299K", "H302Y", "A309T", "Q315R", "K316N", "T319A", "R322I", "Y324H", "N327-", "K334R", "D361N", "N364D", "-372G", "-373A", "-376I", "K393R", "I414V", "N434S", "S436E", "T439I", "I463V", "K474R"], "gp41": ["R46K", "V72L", "S101L", "K106R", "E110D", "K122R", "S165T", "L206F", "G230D", "F263L", "A310V", "I321L", "F325L"], "nef": ["S9R", "I20M", "H40Y", "E63D", "E65D", "R71K", "I133V", "D149E", "P150Q", "A151E", "V153I", "E158T", "I168M", "K178R", "M182R", "R188H", "R196Q"], "p1": ["S9H"], "p17": ["V7I", "K28Q", "L61M", "E62G", "Q65L", "T67S", "E93D", "K95R", "N109D", "K127N"], "p2": ["-12S"], "p24": ["T11I", "S14P", "S41T", "L83I", "E98D", "T110N", "T171V"], "p6": ["T22A", "E34D", "Q35P", "Q36-"], "pro": ["G16A", "Q61E"], "rev": ["A15T", "S56G", "E57Q", "H82N", "G90R", "I102V"], "tat": ["N12K", "K29T", "I36V", "S61N"], "vif": ["R17K", "R19K", "N22H", "F39S", "T74P", "K77R", "I87V", "S144P"], "vpr": ["N48D", "T63I", "Q66L"], "vpu": ["F16A", "G27I", "K32R", "N69V", "P76-", "L77-", "D78-", "D79-", "N80-", "N81-", "V82-"]}, "labels": {"aa": "INT: E3D, N134D; RT-p51: E6D, T11K, K39M, S158A, S162C, T200I, E203D, M245T, K311R, V314M, V326I, V371A, T377A, E399D, V435A; RT-p66: E6D, T11K, K39M, S158A, S162C, T200I, E203D, M245T, K311R, V314M, V326I, V371A, T377A, E399D, V435A, P468S, I517V, R530K, Y554N; gp120: K35T, N57A, N71G, E105A, -107N, N108S, -109T, T110R, S111P, S112D, S116R, -117Y, -118E, K141R, K142T, S155A, N158S, S160N, V180I, K201R, K212G, V242I, M243I, T261K, N265K, T267N, I269T, G272D, I279Y, R299K, H302Y, A309T, Q315R, K316N, T319A, R322I, Y324H, N327-, K334R, D361N, N364D, -372G, -373A, -376I, K393R, I414V, N434S, S436E, T439I, I463V, K474R; gp41: R46K, V72L, S101L, K106R, E110D, K122R, S165T, L206F, G230D, F263L, A310V, I321L, F325L; nef: S9R, I20M, H40Y, E63D, E65D, R71K, I133V, D149E, P150Q, A151E, V153I, E158T, I168M, K178R, M182R, R188H, R196Q; p1: S9H; p17: V7I, K28Q, L61M, E62G, Q65L, T67S, E93D, K95R, N109D, K127N; p2: -12S; p24: T11I, S14P, S41T, L83I, E98D, T110N, T171V; p6: T22A, E34D, Q35P, Q36-; pro: G16A, Q61E; rev: A15T, S56G, E57Q, H82N, G90R, I102V; tat: N12K, K29T, I36V, S61N; vif: R17K, R19K, N22H, F39S, T74P, K77R, I87V, S144P; vpr: N48D, T63I, Q66L; vpu: F16A, G27I, K32R, N69V, P76-, L77-, D78-, D79-, N80-, N81-, V82-"}}}, {"name": "FJ388906", "node_attrs": {"div": 0.13475, "accession": "FJ388906", "clade_membership": {"value": "A6"}, "country": {"value": "CY"}, "date": {"value": 2005.0}, "Strain_name": {"value": "CY057"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G407A", "G518A", "A557G", "T662C", "G667A", "C719T", "A828G", "G938A", "A980G", "G1109A", "T1229C", "G1452A", "A1689C", "G1718A", "-1746C", "-1747C", "-1748C", "C1749T", "T1752C", "C1753T", "C1754G", "C1755A", "T1756A", "G1757A", "A1758C", "A1760G", "C1761G", "A1771G", "A1781G", "-1784T", "A1786C", "A1835G", "A2012C", "G2215C", "C2258T", "G2389A", "A2400G", "A2617G", "A2618C", "T2770C", "C2845T", "A3058G", "G3085A", "A3096C", "A3099G", "C3194G", "A3230G", "G3236A", "A3247G", "G3556A", "C3589T", "A3654G", "G3664A", "A3760G", "A3805G", "C4021A", "C4286T", "T4510C", "T4656A", "C4826G", "A4861G", "G4913A", "A4952G", "G4959T", "A5055C", "G5212A", "A5269G", "A5287C", "G5371T", "G5418A", "T5448G", "T5483G", "A5547C", "G5561A", "C5599T", "C5612T", "G5650T", "C5654T", "A5656G", "C5974T", "A6015G", "A6044G", "T6046A", "A6050G", "A6164T", "A6179-", "G6183C", "C6186G", "T6187C", "A6188T", "A6189C", "C6190T", "G6195A", "-6203G", "-6204T", "-6205T", "-6207G", "-6208T", "-6209A", "-6210A", "-6211C", "-6212A", "-6213G", "-6214C", "-6215A", "-6216G", "-6217C", "-6218A", "-6219T", "-6222T", "A6273G", "T6287C", "A6338G", "T6340G", "T6436A", "A6465C", "A6538T", "G6575A", "G6593A", "A6609G", "G6611A", "C6613T", "G6638A", "A6800G", "A6821G", "-6835G", "A6936C", "-6958C", "A6960G", "-6961A", "-6963A", "-6970T", "-6971G", "-6972G", "-6973C", "-6975C", "-6976A", "-6978A", "G6980A", "A6981G", "A6986G", "T6988G", "A6989G", "G6990T", "C6993A", "A6994T", "C6999T", "A7005G", "C7008A", "T7009C", "G7146C", "A7157G", "A7158G", "G7190A", "A7219G", "A7307G", "T7325C", "C7463T", "A7693G", "T7702G", "T7813C", "T7879A", "T7893C", "A7972C", "G8030A", "T8047C", "C8071T", "G8079T", "C8097T", "G8107A", "C8149T", "T8167C", "T8243G", "A8284G", "A8328T", "T8355G", "G8365A", "C8382A", "G8412C"], "INT": ["H171Y"], "RT-p51": ["E40D", "P55S", "K102R", "N175H", "Q334P", "D335G", "Q367E", "S379G", "V381I"], "RT-p66": ["E40D", "P55S", "K102R", "N175H", "Q334P", "D335G", "Q367E", "S379G", "V381I", "K520R"], "gp120": ["Q54R", "N64E", "N66D", "K93Q", "T104S", "-109S", "S114N", "-117V", "-118S", "-119N", "-120S", "-121S", "-122M", "-123F", "-124E", "K140R", "Y145H", "S162Q", "N204T", "K240E", "E241K", "E247K", "N252S", "G253S", "E262K", "K316E", "K323E", "-326K", "N328-", "D361T", "-372E", "-373V", "-376V", "-377N", "-378G", "-379N", "G431A", "N432S", "S433D", "N434T", "N437S", "D446N"], "gp41": ["I2V", "F8L", "I130M", "D133E", "M176I", "V197A", "R221G", "K223N", "A243T", "R259L", "S265L", "W314G", "K342I"], "nef": ["W5G", "S8N", "P14T"], "p17": ["S111N"], "p2": ["-10T", "A11S"], "p24": ["S33G"], "p6": ["K31R", "Q35E"], "pro": ["I13V", "I72L"], "rev": ["E11A", "V16I", "K39R", "S61N", "S67P", "E87K", "Q101*", "S107P"], "tat": ["N24K", "I36S", "S62N"], "vif": ["L24I", "H80Q", "E92G", "V125L", "T157P"], "vpr": ["G89V"], "vpu": ["T2I", "V15L", "I17V", "-70Y", "-71V"]}, "labels": {"aa": "INT: H171Y; RT-p51: E40D, P55S, K102R, N175H, Q334P, D335G, Q367E, S379G, V381I; RT-p66: E40D, P55S, K102R, N175H, Q334P, D335G, Q367E, S379G, V381I, K520R; gp120: Q54R, N64E, N66D, K93Q, T104S, -109S, S114N, -117V, -118S, -119N, -120S, -121S, -122M, -123F, -124E, K140R, Y145H, S162Q, N204T, K240E, E241K, E247K, N252S, G253S, E262K, K316E, K323E, -326K, N328-, D361T, -372E, -373V, -376V, -377N, -378G, -379N, G431A, N432S, S433D, N434T, N437S, D446N; gp41: I2V, F8L, I130M, D133E, M176I, V197A, R221G, K223N, A243T, R259L, S265L, W314G, K342I; nef: W5G, S8N, P14T; p17: S111N; p2: -10T, A11S; p24: S33G; p6: K31R, Q35E; pro: I13V, I72L; rev: E11A, V16I, K39R, S61N, S67P, E87K, Q101*, S107P; tat: N24K, I36S, S62N; vif: L24I, H80Q, E92G, V125L, T157P; vpr: G89V; vpu: T2I, V15L, I17V, -70Y, -71V"}}}]}]}, {"name": "A6_NODE_0000023", "node_attrs": {"div": 0.11375000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G1697A", "G1718A", "C5778T", "G5781A", "T5831C", "-6207G", "A6276G", "A6282C", "G6368A", "G6611A", "G6716A", "A7095G", "A8746T"], "gp120": ["T3A", "N57D", "K141R", "K143T", "A172T", "A288T"], "gp41": ["M176I"], "nef": ["Y135F"], "vpu": ["P76L"]}, "labels": {"aa": "gp120: T3A, N57D, K141R, K143T, A172T, A288T; gp41: M176I; nef: Y135F; vpu: P76L"}}, "children": [{"name": "A6_NODE_0000024", "node_attrs": {"div": 0.11518000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G776A", "G1642A", "A3217G", "C4428T", "T4701G", "C5654T", "A5665G", "A6044G", "T6046A", "C6321T", "G8997-"], "INT": ["T218I"], "RT-p51": ["K39N"], "RT-p66": ["K39N"], "gp120": ["N64E", "Y145H", "T156I"], "p1": ["R4K"], "vif": ["F39V"], "vpu": ["I20V"]}, "labels": {"aa": "INT: T218I; RT-p51: K39N; RT-p66: K39N; gp120: N64E, Y145H, T156I; p1: R4K; vif: F39V; vpu: I20V"}}, "children": [{"name": "MH330374", "node_attrs": {"div": 0.14233, "accession": "MH330374", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2013.0}, "Strain_name": {"value": "MRK067"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G181A", "A263G", "A388G", "C435A", "G480A", "A494C", "A512G", "G518A", "A520G", "A534T", "G608A", "A669C", "T852A", "T858C", "G860A", "T892C", "C902T", "A941G", "G956A", "T978G", "G987A", "C1006A", "C1009A", "C1118T", "A1146C", "C1220T", "T1271G", "A1274T", "G1452A", "A1697G", "A1720T", "T1722C", "T1724C", "G1730A", "A1736G", "G1773A", "C1785T", "A1786G", "C1825A", "A2014C", "A2197G", "G2212T", "T2245C", "C2263T", "A2272T", "G2305A", "T2323C", "C2326T", "C2335T", "A2404C", "T2449C", "T2452A", "C2467T", "T2499C", "G2518A", "G2548A", "T2567G", "T2779G", "G2925A", "T3022C", "A3064G", "G3085A", "A3099G", "G3124A", "T3139C", "T3172C", "T3175C", "C3252T", "G3264A", "A3280G", "T3399C", "G3616T", "G3643A", "G3662C", "A3665G", "A3682G", "A3805C", "A3901G", "T4085C", "G4112A", "C4140T", "A4246G", "A4312G", "A4407G", "G4677A", "G4693A", "A4735G", "T4742C", "A4806G", "C4826T", "C4857A", "G4859A", "G4963A", "C4965A", "T5018G", "T5203C", "C5213A", "C5214T", "A5227G", "A5366C", "G5371T", "C5406A", "A5462G", "G5534A", "A5548T", "A5575G", "A5576T", "G5589C", "T5704C", "C5707A", "T5708G", "G5783A", "C5831T", "A5865G", "A5866G", "G5915A", "A5947G", "C6004T", "A6023G", "A6131C", "A6168C", "C6170T", "C6171T", "C6172T", "T6184C", "A6185C", "A6192G", "C6193T", "G6195A", "T6196C", "T6199C", "-6201G", "-6203G", "-6204A", "-6205T", "A6209G", "-6210A", "-6211C", "A6212T", "-6213T", "-6214G", "-6215C", "-6216T", "-6217T", "A6225C", "A6234G", "C6256T", "C6263G", "C6282T", "T6287C", "A6324G", "G6339A", "A6362G", "C6363T", "A6364G", "A6395T", "A6574G", "G6575A", "A6580G", "A6584G", "G6593A", "A6611G", "G6626A", "T6655G", "T6660C", "G6668A", "C6673T", "C6678G", "T6688C", "G6693A", "A6714G", "A6716G", "G6732A", "C6769T", "G6774A", "C6790A", "C6797T", "A6799T", "G6819A", "A6822C", "G6871A", "C6888G", "A6889C", "A6936G", "-6956G", "-6958C", "-6961T", "-6963G", "-6964C", "-6967T", "-6968T", "-6969G", "-6970G", "A6983G", "G6990A", "C6999A", "A7002G", "C7008A", "G7033A", "A7060G", "A7088G", "A7090T", "A7094G", "G7095T", "T7096G", "G7101A", "A7133G", "C7134T", "A7135C", "T7150C", "C7156T", "C7164A", "C7165T", "-7166G", "-7167A", "-7168A", "-7169A", "-7170C", "-7171C", "A7241G", "A7269G", "A7275G", "A7294G", "A7375G", "A7525C", "G7669A", "C7690A", "T7692C", "A7714G", "A7772G", "T7801G", "C7843T", "C7937A", "A7953C", "G7964A", "A7970G", "G7979A", "A7998G", "G8005A", "A8006G", "G8019A", "G8036A", "C8037T", "T8047C", "G8050A", "G8079A", "C8097T", "A8132C", "G8133T", "G8172T", "T8206C", "T8218C", "A8222C", "A8275C", "T8276G", "T8277C", "T8291C", "G8317A", "C8320T", "G8407A", "C8507T", "A8531C", "G8590C", "C8597T", "A8739G", "A8780G", "G8793A", "T8795G", "C8825T", "T8867C", "T8887A", "A8892C", "C8917G", "C8990T", "-8993A", "C9023T", "C9108-", "-9109T", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-", "G9127-", "G9128-", "C9129-", "T9130-", "A9131-", "G9132-", "C9133-", "T9134-", "A9135-", "G9136-", "G9137-", "G9138-", "A9139-", "A9140-", "C9141-", "C9142-", "C9143-", "A9144-", "C9145-", "T9146-", "G9147-", "C9148-", "T9149-", "T9150-", "A9151-"], "INT": ["E10D", "V113I", "T122I", "K211R"], "RT-p51": ["K103N", "I135T", "S158A", "R277K", "D335G", "T386I", "R390K", "V435A"], "RT-p66": ["K103N", "I135T", "S158A", "R277K", "D335G", "T386I", "R390K", "V435A", "Q507H", "E523Q", "K524E"], "gp120": ["E4G", "E21K", "K93Q", "E105A", "-107N", "S115N", "-117S", "-118R", "E125-", "M126-", "K127-", "L137V", "T143I", "D157G", "N159S", "S162E", "T170V", "T181S", "E241K", "I244V", "E247K", "V258I", "I269T", "G272S", "T275R", "R280H", "Q287R", "T288A", "A291T", "T292D", "G293A", "D294V", "R307K", "N312R", "Q315Y", "R322K", "K323T", "T345S", "D361G", "-372W", "-373A", "-380T", "-381E", "-382D", "-383S", "-384E", "-385N", "R412G", "N414V", "R416K", "T427V", "N434S", "S436E", "I463V", "K472R", "K474R"], "gp41": ["I24M", "R74S", "N129K", "I130T", "S157G", "N166K", "H212N", "K223E", "G226S", "D232G", "I235V", "S239N", "A245I", "R259Q", "S265L", "S277Y", "G290V", "I307L", "R324S", "F325A", "C330R"], "nef": ["R22Q", "I28T", "G83A", "I133V", "A151K", "M182K", "K184Q", "K192R"], "p17": ["K18R", "L34I", "G49S", "E62G", "T67S", "K112Q"], "p2": ["-10T", "A11N"], "p24": ["M15I", "S41T", "M54T", "L83V", "A86T", "P92Q", "P93Q", "N139H", "D180E"], "p6": ["N14I", "F15L", "M17I", "D32N", "H36C", "P49H"], "rev": ["D7N", "E11D", "I21F", "S25T", "Q41R", "R44K", "D53S", "C63Y", "S67P", "A68T", "Q95L"], "tat": ["K29R", "R53K", "T58S", "N67V", "K71N", "T82P"], "vif": ["V31I", "R36K", "K50R", "T74A", "Q91K", "G126E", "H127N"], "vpr": ["P37M", "R87S", "G89V"], "vpu": ["L34R", "N69V", "L76-", "L77-", "D78-", "D79-", "N80-", "N81-", "V82-"]}, "labels": {"aa": "INT: E10D, V113I, T122I, K211R; RT-p51: K103N, I135T, S158A, R277K, D335G, T386I, R390K, V435A; RT-p66: K103N, I135T, S158A, R277K, D335G, T386I, R390K, V435A, Q507H, E523Q, K524E; gp120: E4G, E21K, K93Q, E105A, -107N, S115N, -117S, -118R, E125-, M126-, K127-, L137V, T143I, D157G, N159S, S162E, T170V, T181S, E241K, I244V, E247K, V258I, I269T, G272S, T275R, R280H, Q287R, T288A, A291T, T292D, G293A, D294V, R307K, N312R, Q315Y, R322K, K323T, T345S, D361G, -372W, -373A, -380T, -381E, -382D, -383S, -384E, -385N, R412G, N414V, R416K, T427V, N434S, S436E, I463V, K472R, K474R; gp41: I24M, R74S, N129K, I130T, S157G, N166K, H212N, K223E, G226S, D232G, I235V, S239N, A245I, R259Q, S265L, S277Y, G290V, I307L, R324S, F325A, C330R; nef: R22Q, I28T, G83A, I133V, A151K, M182K, K184Q, K192R; p17: K18R, L34I, G49S, E62G, T67S, K112Q; p2: -10T, A11N; p24: M15I, S41T, M54T, L83V, A86T, P92Q, P93Q, N139H, D180E; p6: N14I, F15L, M17I, D32N, H36C, P49H; rev: D7N, E11D, I21F, S25T, Q41R, R44K, D53S, C63Y, S67P, A68T, Q95L; tat: K29R, R53K, T58S, N67V, K71N, T82P; vif: V31I, R36K, K50R, T74A, Q91K, G126E, H127N; vpr: P37M, R87S, G89V; vpu: L34R, N69V, L76-, L77-, D78-, D79-, N80-, N81-, V82-"}}}, {"name": "A6_NODE_0000025", "node_attrs": {"div": 0.11928000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G90T", "A1839G", "G2215A", "A2221G", "T2527C", "C2575T", "T3068C", "A3292G", "T3319C", "T3355C", "A3805G", "C4144T", "G4231A", "T4805G", "G4860A", "T5147C", "C5180A", "C5186A", "G5375A", "T5688C", "A6024T", "G6425A", "T6466C", "G6571A", "C6601T", "A6962-", "-6980G", "-6981T", "-6982T", "G6995C", "A7339G", "G7673A", "T7692A", "G7753A", "T7893C", "T7929C", "G7965A", "C8051A", "A8258T", "A8794C", "G8875A", "A9009G"], "gp120": ["D57I", "E105-", "S111-", "A191T", "-374T"], "gp41": ["V124I", "I130K", "V197A", "L209P", "R221E", "I319L"], "pro": ["K14R"], "rev": ["K39R", "A68E"], "tat": ["E86K"], "vif": ["H73Q"], "vpr": ["Y15H", "L26I", "H28N"]}, "labels": {"aa": "gp120: D57I, E105-, S111-, A191T, -374T; gp41: V124I, I130K, V197A, L209P, R221E, I319L; pro: K14R; rev: K39R, A68E; tat: E86K; vif: H73Q; vpr: Y15H, L26I, H28N"}}, "children": [{"name": "A6_NODE_0000026", "node_attrs": {"div": 0.12152000000000003, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C531T", "A534G", "C763T", "G2212T", "A4735G", "A5186G", "A5462G", "G5783A", "-6214T", "-6215A", "T6735A", "A6753G", "-6979A", "C7008A", "T7039C", "C7153A", "A7275G", "A7706C", "A7831G", "C7926T", "C8425G", "T8595G", "C8913T"], "gp120": ["S116-", "K300R", "N432G", "K474R"], "gp41": ["I135L", "I176M", "T208I"], "nef": ["F85V"], "p17": ["P66S", "T67A"], "p24": ["T11V", "M15I"], "tat": ["K29R", "P73S"], "vif": ["K50R"], "vpu": ["-70Y"]}, "labels": {"aa": "gp120: S116-, K300R, N432G, K474R; gp41: I135L, I176M, T208I; nef: F85V; p17: P66S, T67A; p24: T11V, M15I; tat: K29R, P73S; vif: K50R; vpu: -70Y"}}, "children": [{"name": "JQ292896", "node_attrs": {"div": 0.13516000000000003, "accession": "JQ292896", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2006.0}, "Strain_name": {"value": "RU_915_1016"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G121A", "G480A", "A1307G", "A1442G", "G1452A", "A1459G", "G1487A", "A1718G", "G1730A", "G1763A", "G1784A", "G1852A", "C2047T", "C2075A", "T2129C", "G2182A", "G2221A", "T2269C", "A2314G", "G2329A", "A2498G", "T2567G", "C2589T", "C2644T", "T2689C", "T2829C", "A2836G", "T3349C", "A3451G", "A3484G", "A3655T", "T3755A", "C3763T", "A3808C", "A3982G", "A4120G", "T4169G", "A4696G", "C4728A", "C4757T", "A4778T", "A4784G", "A4806G", "G4829A", "G4838A", "A4860G", "A4950G", "G4959A", "C4967A", "C5006T", "G5131A", 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["N28V"], "vpu": ["E5D", "V20I", "L33V", "-75A"]}, "labels": {"aa": "INT: E11D, W132G; RT-p51: I135V, S158A, T165I, M245T; RT-p66: I135V, S158A, T165I, M245T, I452M, K520N, Y554N; gp120: N5-, -105E, -107N, -109R, -111S, E125-, M126I, H145F, N159S, S162Q, K201R, P203T, N206T, T208K, K212R, K240E, G253N, G272N, T277K, D294E, I298P, T319I, K334T, D368-, N369-, S370-, T371-, -379S, -380T, -381Q, -382A, -383N, -384E, -385N, N397R, R412Q, N414I, T427V, S433T, N435R, K462E, I466L, K472E; gp41: M118I, S265L, A267V, C330R; nef: V16I, I20M, L76V, Y102H, K104Q, E108D, I133V, E176D, L191F, K192T, R194K; p17: G49S; p2: -10T, A11S; p24: V11I; p6: M17I; pro: L93I; rev: T8P, E68A; tat: H54P, T58A; vif: E37G, H48N, T74A, K122E, V125I, H127Q, G182D; vpr: N28V; vpu: E5D, V20I, L33V, -75A"}}}, {"name": "JQ292900", "node_attrs": {"div": 0.13494000000000003, "accession": "JQ292900", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2006.0}, "Strain_name": {"value": "RU_SP_B_049"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C201T", "A242G", "C606A", "A762G", "C845T", "T892C", "T904C", "A968C", "T1444C", "A1661G", "A1742-", "A1743-", "C1744-", "C1745-", "C1749-", "C1750-", "C1751-", "T1752-", "C1753-", "C1754-", "C1755-", "T1756-", "A1963G", "A1969G", "C2038T", "G2123A", "C2127A", "A2239G", "T2597C", "A2710G", "G2925A", "A3277G", "G3307A", "A3619G", "G4060A", "A4105G", "A4231G", "G4243A", "T4428C", "A4459G", "C4776T", "A4862C", "C4871T", "C4976A", "A5155G", "A5421G", "A5576C", "C5599A", "A5602C", "T5636C", "C5707T", "C5831T", "T5834C", "C5878T", "A6022G", "T6024A", "A6131C", "C6148T", "A6164G", "T6184C", "A6185T", "A6191C", "A6197C", "T6199C", "A6200G", "-6201T", "C6202T", "-6203A", "-6204A", "-6205C", "-6210A", "-6211T", "-6213A", "-6216G", "-6217C", "-6218T", "-6219T", "-6220G", "-6221T", "-6222T", "-6223T", "C6263T", "A6273G", "C6282A", "T6283G", "T6287C", "A6320C", "G6333A", "A6371G", "A6395T", "A6425G", "G6526A", 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0.13960000000000003, "accession": "MH330350", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2012.0}, "Strain_name": {"value": "BLG035"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C144T", "A149C", "C151T", "A152C", "T154G", "G159T", "G161A", "G162-", "T163-", "G164-", "T165-", "A166-", "C175T", "C179G", "A180C", "G183A", "G184-", "C185-", "G186-", "C187-", "C189T", "G190C", "A192C", "G196-", "G197-", "A198-", "C199-", "T200-", "C201-", "G202-", "A203-", "A204-", "A205-", "G206-", "C207-", "G208-", "A209-", "A210-", "A211-", "G212-", "T213-", "T214-", "C218-", "C219-", "A220-", "G221-", "A222-", "G223-", "A224-", "A225-", "G226-", "T227-", "T228-", "C229-", "T230-", "C231-", "C456T", "A461C", "C558G", "A571T", "G650A", "C694T", "T695G", "A699G", "C713T", "A762G", "C763T", "A776G", "T824C", "G866A", "C890T", "A945G", "T978G", "C1115A", "A1123G", "G1159A", "G1192A", "A1242G", "A1265G", "A1329T", "T1335C", "G1339A", "C1350T", "G1355A", "T1409C", "A1412G", "A1459G", "C1490T", "A1529C", "C1615A", "A1642G", "A1759G", "A1963G", "T1986C", "A2059G", "G2182A", "T2315C", "G2463A", "G2509A", "T2612C", "C2694T", "A2710G", "T2839C", "G2914A", "T2917C", "A3164C", "G3382A", "A3387G", "T3418C", "A3449C", "T3505A", "G3523A", "A3574G", "A3583G", "T3610C", "G3643A", "C3649T", "A3676G", "T3755A", "A3756G", "A3784C", "T3904C", "A4052T", "G4060A", "T4075C", "C4130T", "G4982T", "A5143G", "C5292T", "G5418A", "T5448G", "C5612A", "A5613C", "A5622G", "C5658T", "G5700A", "A5702G", "C5727T", "A5748T", "A6079G", "A6168C", "G6177T", "T6184C", "A6185T", "G6198C", "T6199C", "-6201T", "-6203A", "-6204A", "-6205C", "-6210A", "-6211T", "-6213G", "-6214T", "-6215A", "-6216G", "-6217C", "-6218A", "-6219T", "-6220G", "-6221G", "-6222G", "-6223T", "A6259G", "A6268T", "G6276A", "C6282A", "T6283A", "T6287C", "T6310C", "T6388C", "G6457C", "G6458A", "A6459G", "A6464G", "A6573G", "G6575A", "C6613A", "T6618C", "C6649T", "T6655G", "G6668A", "T6738C", "A6751G", "G6774A", "A6785G", "T6787C", "C6790A", "G6802C", "C6838T", "A6848G", "C6919T", "C6925T", "C6937A", "C6949T", "-6956G", "-6958C", "-6961T", "-6962A", "-6963A", "-6964C", "-6967T", "C6999A", "A7005G", "A7006C", "A7032G", "G7095A", "G7102T", "G7152C", "T7182C", "G7199A", "A7238C", "A7296G", "A7303G", "G7417A", "G7440T", "A7590C", "T7702G", "A7733C", "T7747G", "A7800G", "T7879G", "A7918G", "C7929T", "C7932T", "G7957A", "A7998T", "G8017C", "G8030A", "C8097T", "G8196A", "A8222T", "T8281G", "G8305A", "G8321A", "G8398A", "C8425T", "C8494A", "T8504C", "C8507T", "G8522A", "A8531T", "G8554A", "G8590C", "T8594G", "C8790A", "G8870A", "C8917A", "-8997G", "C9108-", "-9109T", "A9131G", "C9165G"], "INT": ["E3D", "T93S", "P119S"], "RT-p51": ["N39K", "S123N", "T200I", "K357Q", "K431R"], "RT-p66": ["N39K", "S123N", "T200I", "K357Q", "K431R", "I452L", "Y554S"], "gp120": ["-105A", "-109I", "-111N", "S116M", "-117G", "-118E", "R138S", "R141K", "T143K", "N158S", "G161S", "K201N", "D202S", "N204D", "K240G", "E241K", "G253R", "I255T", "G272S", "Y290V", "A291T", "T292-", "G293-", "D294-", "I295-", "R307K", "N311D", "N312R", "K316N", "I332V", "D361E", "N369G", "S370N", "T371N", "-372T", "-373V", "-379S", "-380T", "-381Q", "-382D", "-383N", "-384G", "-385T", "K393R", "R416S", "N432V", "S433-", "N435T", "I443T", "D449N", "K462Q", "E481G"], "gp41": ["R46M", "N96T", "D133E", "K144Q", "D148E", "N166S", "P209L", "T210I", "D232V", "A243T", "S265L", "S298N", "I307L", "C326W", "A340T"], "nef": ["R19K", "T51N", "E63D", "R71K", "G83A", "P150T"], "p1": ["K4R"], "p17": ["E42D", "L75V", "Y79F", "T120M", "T122A"], "p2": ["-12S"], "p24": ["T11V", "T72A", "L83V", "D128E", "K131R", "R143K", "R154K", "T171A", "T200S", "R203K", "P207S"], "p6": ["K27R", "P38S", "S39I"], "p7": ["E21D", "T50N"], "pro": ["L63P"], "rev": ["A37T", "R50S", "E57Q", "S61N"], "tat": ["N24K", "P75S", "G83D"], "vif": ["E92K", "R132S", "N186S"], "vpr": ["T63I"], "vpu": ["T2N", "K32R", "R47S", "-70Y", "-75A"]}, "labels": {"aa": "INT: E3D, T93S, P119S; RT-p51: N39K, S123N, T200I, K357Q, K431R; RT-p66: N39K, S123N, T200I, K357Q, K431R, I452L, Y554S; gp120: -105A, -109I, -111N, S116M, -117G, -118E, R138S, R141K, T143K, N158S, G161S, K201N, D202S, N204D, K240G, E241K, G253R, I255T, G272S, Y290V, A291T, T292-, G293-, D294-, I295-, R307K, N311D, N312R, K316N, I332V, D361E, N369G, S370N, T371N, -372T, -373V, -379S, -380T, -381Q, -382D, -383N, -384G, -385T, K393R, R416S, N432V, S433-, N435T, I443T, D449N, K462Q, E481G; gp41: R46M, N96T, D133E, K144Q, D148E, N166S, P209L, T210I, D232V, A243T, S265L, S298N, I307L, C326W, A340T; nef: R19K, T51N, E63D, R71K, G83A, P150T; p1: K4R; p17: E42D, L75V, Y79F, T120M, T122A; p2: -12S; p24: T11V, T72A, L83V, D128E, K131R, R143K, R154K, T171A, T200S, R203K, P207S; p6: K27R, P38S, S39I; p7: E21D, T50N; pro: L63P; rev: A37T, R50S, E57Q, S61N; tat: N24K, P75S, G83D; vif: E92K, R132S, N186S; vpr: T63I; vpu: T2N, K32R, R47S, -70Y, -75A"}}}, {"name": "A6_NODE_0000028", "node_attrs": {"div": 0.12153000000000003, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C2075A", "G4701T", "A5656G", "G5842-", "C6180A", "C6208T", "A6209-", "A6212-", "G6339A", "C6758T", "A7688G", "C8220A", "A8584T", "-8993A"], "gp120": ["P106-", "N159G", "S162Q", "T374N", "N378-"], "gp41": ["S157G"], "nef": ["Y81F"], "pro": ["L93I"], "vif": ["V39F"], "vpu": ["I17V", "N69V"]}, "labels": {"aa": "gp120: P106-, N159G, S162Q, T374N, N378-; gp41: S157G; nef: Y81F; pro: L93I; vif: V39F; vpu: I17V, N69V"}}, "children": [{"name": "MH330337", "node_attrs": {"div": 0.14244000000000004, "accession": "MH330337", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2013.0}, "Strain_name": {"value": "ARH028"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "A398G", "C467T", "A534C", "A548C", "A585G", "C586T", "G614C", "A704C", "A708T", "C767T", "A774C", "G860A", "A932G", "C988T", "C994T", "C1211T", "T1271G", "A1292C", "A1370C", "G1452A", "G1472A", "A1476G", "T1484C", "A1644C", "A1697G", "C1706T", "T1756C", "A1780C", "A1786G", "A1963G", "G2074A", "G2156A", "T2171C", "C2203G", "A2211G", "A2239G", "G2311A", "G2329A", "G2350A", "T2393C", "A2407G", "T2452G", "T2488G", "C2527T", "A2551G", "A2599G", "C2644T", "G2707A", "G2925A", "A2938G", "A2988G", "C3100A", "G3236A", "C3252T", "G3385A", "C3415T", "G3448A", "A3571G", "A3655T", "A3802G", "A3808T", "G3877A", "T3924C", "C3994T", "A3995G", "T4039C", "A4057G", "A4255G", "A4300G", "A4303C", "A4363T", "A4658G", "A4671G", "A4696G", "T4706C", "A4735G", "C4754T", "G4765A", "A4787G", "A4806G", "A4860G", "A4952G", "C5006T", "C5147T", "A5180C", "C5221T", "A5345G", "A5462G", "G5545A", "A5581C", "G5699A", "C5763T", "A5804G", "-5842A", "G5861A", "G5893A", "G5917C", "G6037A", "A6050G", "A6085C", "C6116T", "G6167A", "A6174G", "A6176C", "G6177A", "T6181C", "A6192G", "A6200G", "-6201G", "-6203T", "-6204T", "-6205G", "G6207T", "T6287C", "G6327A", "A6329G", "A6330G", "A6335G", "T6337G", "A6338C", "T6340G", "A6371G", "A6456G", "C6461A", "A6471C", "C6477A", "C6482T", "C6499T", "G6572A", "A6611G", "T6618C", "T6660C", "C6666T", "G6668A", "T6735A", "G6742A", "C6745T", "A6759C", "A6764G", "T6766G", "G6771A", "G6776A", "C6780T", "-6956G", "-6958C", "A6959G", "-6961A", "-6962A", "-6963A", "-6964T", "-6967T", "C7014T", "A7027G", "G7089A", "C7127A", "G7190A", "G7291A", "C7392T", "A7532C", "C7605T", "A7628G", "G7629A", "A7641G", "T7642A", "T7677G", "C7723T", "G7735A", "T7747G", "A7772G", "G7790A", "A7817C", "G7873A", "A7974G", "C7988A", "C7993A", "A8011C", "G8053A", "C8097T", "A8173G", "A8219C", "C8232T", "T8291C", "G8329A", "T8332G", "T8390A", "C8425G", "C8477T", "G8555A", "T8595C", "C8751T", "G8793A", "C8794T", "T8795G", "C8809A", "C8840T", "C8855T", "T8883C", "C8934T", "G9009-", "G9095T"], "INT": ["E11D", "M50T", "I74V"], "RT-p51": ["V21I", "D36E", "N39R", "R277K", "E298G", "D335E", "V381I", "T386I"], "RT-p66": ["V21I", "D36E", "N39R", "R277K", "E298G", "D335E", "V381I", "T386I", "K520N"], "gp120": ["A3T", "E21D", "N66D", "Q77H", "-107K", "N108P", "-109S", "T110H", "-111N", "S112T", "-117G", "-118L", "-119I", "-120E", "M173V", "K201R", "P203T", "N206T", "T208K", "P210S", "I255T", "I269T", "P271L", "G272S", "H302S", "N304E", "S306N", "A308T", "A309V", "N312S", "-372Q", "-373A", "-375E", "-385T", "T387I", "R412K", "N414S", "L425I", "N434S", "S436E", "N437T", "E438-", "T439-", "D446N"], "gp41": ["A30V", "K77Q", "S101F", "S109D", "D113G", "I125S", "N129D", "D148E", "D163N", "K172Q", "E224G", "Q229K", "S265L", "T306H", "A310V", "C330R"], "nef": ["I28R", "F85L", "A151M", "A156D", "K192T"], "p1": ["I5L"], "p17": ["K18R", "T67P", "T84V", "E93D", "S125C"], "p2": ["-10T", "A11N"], "p24": ["M15L", "A86V", "A88V", "D180E", "E187D", "E213D"], "p6": ["-23P", "P24S", "S25P", "L26-", "E34A", "H36R"], "p7": ["S4G"], "rev": ["A47E", "Q49K", "I55L", "E69K", "I109V"], "tat": ["K29R", "G57R", "I69L"], "vif": ["M29V", "E37G", "K50R", "G60E", "T74A"], "vpr": ["H15Y", "I26L"], "vpu": ["R31K", "M65-", "E66-", "V67M", "-72G", "-73N", "-74Y", "-75A", "D79N"]}, "labels": {"aa": "INT: E11D, M50T, I74V; RT-p51: V21I, D36E, N39R, R277K, E298G, D335E, V381I, T386I; RT-p66: V21I, D36E, N39R, R277K, E298G, D335E, V381I, T386I, K520N; gp120: A3T, E21D, N66D, Q77H, -107K, N108P, -109S, T110H, -111N, S112T, -117G, -118L, -119I, -120E, M173V, K201R, P203T, N206T, T208K, P210S, I255T, I269T, P271L, G272S, H302S, N304E, S306N, A308T, A309V, N312S, -372Q, -373A, -375E, -385T, T387I, R412K, N414S, L425I, N434S, S436E, N437T, E438-, T439-, D446N; gp41: A30V, K77Q, S101F, S109D, D113G, I125S, N129D, D148E, D163N, K172Q, E224G, Q229K, S265L, T306H, A310V, C330R; nef: I28R, F85L, A151M, A156D, K192T; p1: I5L; p17: K18R, T67P, T84V, E93D, S125C; p2: -10T, A11N; p24: M15L, A86V, A88V, D180E, E187D, E213D; p6: -23P, P24S, S25P, L26-, E34A, H36R; p7: S4G; rev: A47E, Q49K, I55L, E69K, I109V; tat: K29R, G57R, I69L; vif: M29V, E37G, K50R, G60E, T74A; vpr: H15Y, I26L; vpu: R31K, M65-, E66-, V67M, -72G, -73N, -74Y, -75A, D79N"}}}, {"name": "A6_NODE_0000029", "node_attrs": {"div": 0.12392000000000003, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A714C", "A1025G", "A1718G", "A1841G", "A2362G", "T2499C", "T2567G", "G3709A", "C4715T", "A5555G", "T5636C", "-5812G", "A5824-", "A5843-", "T5844-", "A6023C", "T6024C", "A6332G", "G6789A", "A7005G", "A7846G", "A7852C"], "RT-p51": ["I135T", "S158A"], "RT-p66": ["I135T", "S158A"], "gp120": ["I57P", "S112-", "N113-", "H145Y", "H302Y"], "gp41": ["N129E"], "p17": ["K127Q"], "pro": ["I15V"], "rev": ["T14A"], "tat": ["H60R"], "vif": ["E92K"], "vpu": ["V10A", "L76-", "L77-", "D78-", "D79-"]}, "labels": {"aa": "RT-p51: I135T, S158A; RT-p66: I135T, S158A; gp120: I57P, S112-, N113-, H145Y, H302Y; gp41: N129E; p17: K127Q; pro: I15V; rev: T14A; tat: H60R; vif: E92K; vpu: V10A, L76-, L77-, D78-, D79-"}}, "children": [{"name": "JQ292899", "node_attrs": {"div": 0.13603000000000004, "accession": "JQ292899", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2006.0}, "Strain_name": {"value": "RU_915_1041"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A417C", "G470A", "T473G", "T479C", "G480A", "A527T", "C531T", "A543G", "A725C", "C830T", "C890T", "T962G", "A1088C", "G1452A", "G2212T", "G2523A", "A2579T", "G2600A", "G2926A", "T3002C", "C3060T", "C3252T", "T3634C", "A3653G", "T3755C", "A3784C", "G3805A", "A3834G", "A3866G", "G3869A", "A4107G", "C4130T", "G4228A", "A4402G", "G4550A", "A4696G", "T4712C", "G4775A", "G4859A", "G4982T", "T4991C", "C4992T", "C5034T", "C5168T", "C5292T", "T5313C", "G5534A", "A5607G", "T5708G", "A5718G", "A6050G", "C6148T", "A6164G", "C6171T", "G6183C", "T6184C", "A6185T", "A6192G", "C6193T", "A6194-", "G6195-", "T6196-", "A6197-", "G6198-", "T6199-", "A6200-", "C6202-", "A6206-", "G6207-", "T6208-", "C6247T", "T6252C", "C6255G", "T6285C", "A6311G", "C6461A", "A6471C", "A6488C", "G6572A", "G6593A", "A6647G", "A6689G", "C6810T", "A6947T", "C6949-", "A6950-", "C6951-", "T6952-", "T6953-", "G6954-", "G6955-", "A6957-", "A6959-", "A6960-", "A6965-", "C6966-", "-6972G", "-6973G", "-6974A", "-6975C", "-6976G", "-6977G", "-6978A", "-6979A", "G6980A", "T6982G", "A6983G", "T6988C", "A7001G", "C7008A", "G7089A", "G7095A", "G7101C", "A7107T", "C7130T", "C7153T", "A7275G", "C7463A", "A7525C", "A7553C", "G7627C", "G7629A", "T7675A", "C7690A", "G7700A", "A7772G", "G7790A", "A7791G", "T7801G", "C7926T", "A7936C", "C8065T", "G8186A", "A8187G", "T8211A", "A8424C", "C8494A", "G8522A", "G8554A", "C8601T", "C8699A", "A8875G", "C8913T", "G8923A", "G8981A", "C8990T", "A9026-", "G9027A", "T9028G", "C9044T"], "INT": ["E3D", "K20R", "I31V", "V32I", "K111R", "P119S", "V259I"], "RT-p51": ["R143K", "S162C", "E169K", "S322L", "T386I"], "RT-p66": ["R143K", "S162C", "E169K", "S322L", "T386I", "Y554H"], "gp120": ["N66D", "T104A", "-105E", "-106L", "-107N", "N108S", "-109N", "S115N", "-117E", "-118E", "-119M", "E125-", "M126-", "M133T", "T134S", "V144A", "I153V", "P203T", "N206T", "K212Q", "E247K", "G253S", "N265D", "I279V", "D294V", "T319I", "T366-", "W367-", "D368-", "N369-", "S370-", "T371-", "-378G", "-379N", "R412K", "R416T", "E418V", "N432G", "S433G", "N434I", "N437S", "K474R"], "gp41": ["L54M", "R74S", "I84L", "Q108H", "S109N", "D133N", "D163S", "N166K", "T208I", "E295R", "L303Q", "T306N"], "nef": ["I28P", "T51N", "R71K", "L87F", "K178R", "K192T", "R194K"], "p17": ["K28Q", "G49S", "L64F", "P66S", "T70A"], "p2": ["-10T"], "p24": ["M15I"], "rev": ["D7N", "T30P", "L73F", "G113E"], "tat": ["R53K", "P73S", "H76P"], "vif": ["E37G", "R132S", "P136S"], "vpr": ["T63I"], "vpu": ["L34R", "V69-", "N80D"]}, "labels": {"aa": "INT: E3D, K20R, I31V, V32I, K111R, P119S, V259I; RT-p51: R143K, S162C, E169K, S322L, T386I; RT-p66: R143K, S162C, E169K, S322L, T386I, Y554H; gp120: N66D, T104A, -105E, -106L, -107N, N108S, -109N, S115N, -117E, -118E, -119M, E125-, M126-, M133T, T134S, V144A, I153V, P203T, N206T, K212Q, E247K, G253S, N265D, I279V, D294V, T319I, T366-, W367-, D368-, N369-, S370-, T371-, -378G, -379N, R412K, R416T, E418V, N432G, S433G, N434I, N437S, K474R; gp41: L54M, R74S, I84L, Q108H, S109N, D133N, D163S, N166K, T208I, E295R, L303Q, T306N; nef: I28P, T51N, R71K, L87F, K178R, K192T, R194K; p17: K28Q, G49S, L64F, P66S, T70A; p2: -10T; p24: M15I; rev: D7N, T30P, L73F, G113E; tat: R53K, P73S, H76P; vif: E37G, R132S, P136S; vpr: T63I; vpu: L34R, V69-, N80D"}}}, {"name": "MT222939", "node_attrs": {"div": 0.15154000000000004, "accession": "MT222939", "clade_membership": {"value": "A6"}, "country": {"value": "NG"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEURF11NG012_error"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G52A", "T90G", "C93T", "C96T", "C201T", "T227A", "A242G", "T396C", "C456T", "C516A", "G518A", "C535A", "C558A", "A613G", "A619C", "A653G", "A675C", "A749G", "G755A", "A776G", 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"A5627G", "T5628G", "G5652A", "T5653G", "T5654C", "G5665A", "C5688A", "A5689T", "T5704G", "G5737A", "G5741A", "T5834C", "A5865G", "A5908G", "A6008G", "C6097T", "A6174G", "C6175A", "A6176G", "G6177A", "C6178T", "G6183A", "G6198A", "-6201G", "C6202A", "-6203T", "-6204T", "-6205G", "A6206G", "C6282A", "A6319C", "A6320C", "A6371G", "C6397A", "T6416C", "A6430T", "G6457T", "C6466A", "G6557A", "A6571G", "G6577T", "A6611G", "A6628G", "T6637C", "C6665T", "T6694C", "A6753G", "A6764G", "T6766G", "G6771A", "A6775G", "G6776A", "C6797T", "A6799C", "G6802A", "A6803G", "A6821C", "T6835G", "-6956G", "-6958C", "-6961T", "-6962G", "-6963G", "-6964C", "-6967T", "A6983C", "C6999A", "T7009C", "C7014T", "C7020A", "T7096G", "C7217T", "A7241G", "T7309A", "T7325C", "G7366A", "A7373C", "G7390A", "C7411T", "G7417A", "C7625T", "G7627T", "G7640A", "C7678T", "C7690G", "A7701G", "A7712C", "A7744T", "G7769A", "G7773A", "A7799C", "T7853C", "T7863C", "G7921T", "C7929T", "C7939A", "C7940T", "G7964A", "A7972C", "G7997A", "A7998C", "A8018G", "G8019A", "A8032T", "A8069C", "G8070T", "G8171A", "G8172A", "A8188G", "T8203C", "A8207G", "A8219T", "A8220T", "A8275C", "T8302C", "G8393A", "C8425T", "A8447G", "G8469A", "C8477T", "T8595A", "T8610C", "C8651T", "A8652G", "G8654T", "C8661A", "C8688A", "T8740C", "T8746A", "C8751T", "G8762A", "C8794T", "A8798T", "C8855T", "A8869T", "A8885G", "C8906G", "C8917A", "C8934A", "C8990A", "A9082G", "A9101G", "A9106G", "G9137A"], "INT": ["N222T", "Q285P"], "RT-p51": ["D36E", "N39M", "S68G", "I142L", "L173S", "E177D", "T200I", "M245T", "P272L", "R277K", "K311R", "K357R", "V371L"], "RT-p66": ["D36E", "N39M", "S68G", "I142L", "L173S", "E177D", "T200I", "M245T", "P272L", "R277K", "K311R", "K357R", "V371L", "K520R", "K524E", "E527N", "E529D", "Y554S"], "gp120": ["E4G", "N52D", "N108-", "T110-", "S114-", "S115-", "S116-", "-122E", "-123P", "-124R", "T143N", "I156L", "M173V", "Y188H", "K201N", "N204K", "G235S", "K240E", "E241D", "P271S", "D294A", "K300R", "N304E", "S306N", "A308T", "Q315Y", "I317V", "K323Q", "-326K", "N328-", "-372Q", "-373D", "-375G", "-385T", "T387I", "P389Q", "N414R", "N432-", "N435S", "I463V"], "gp41": ["F8L", "I24L", "Q108Y", "D113N", "D133G", "K137Q", "Q147H", "A156T", "G157N", "N166H", "V187A", "L206F", "P209L", "H212Q", "P213S", "E221K", "K223N", "D232T", "S239D", "S256L", "G290K", "N302D", "T306F", "R324S"], "nef": ["V43I", "F85I", "F90L", "K104D", "Q107K", "H116N", "I133T", "F135Y", "A151V", "E152D", "E176V", "L198M"], "p17": ["L61I", "T67N", "L75I", "E93G", "K95T", "K114Q"], "p2": ["-12N"], "p24": ["D128E", "D180E", "T200A", "R203K", "P207S"], "p6": ["N14S", "E34G", "H36C", "S39I"], "p7": ["N5K", "R11K", "T50N"], "pro": ["V13I"], "rev": ["T8P", "P31I", "R39K", "R50N", "E57G", "T62S", "Q74P", "G108E", "T114A"], "tat": ["N24K", "I36L", "H54P", "K63Q", "T77N"], "vif": ["V31I", "Q91L", "K92R", "Y135H", "T155I", "T157K"], "vpr": ["H15Y", "I26L", "N28G", "V84I"], "vpu": ["Y7W", "F16A", "V20I", "I28L", "L33V", "E44K", "R45K", "N80-", "N81-", "V82-"]}, "labels": {"aa": "INT: N222T, Q285P; RT-p51: D36E, N39M, S68G, I142L, L173S, E177D, T200I, M245T, P272L, R277K, K311R, K357R, V371L; RT-p66: D36E, N39M, S68G, I142L, L173S, E177D, T200I, M245T, P272L, R277K, K311R, K357R, V371L, K520R, K524E, E527N, E529D, Y554S; gp120: E4G, N52D, N108-, T110-, S114-, S115-, S116-, -122E, -123P, -124R, T143N, I156L, M173V, Y188H, K201N, N204K, G235S, K240E, E241D, P271S, D294A, K300R, N304E, S306N, A308T, Q315Y, I317V, K323Q, -326K, N328-, -372Q, -373D, -375G, -385T, T387I, P389Q, N414R, N432-, N435S, I463V; gp41: F8L, I24L, Q108Y, D113N, D133G, K137Q, Q147H, A156T, G157N, N166H, V187A, L206F, P209L, H212Q, P213S, E221K, K223N, D232T, S239D, S256L, G290K, N302D, T306F, R324S; nef: V43I, F85I, F90L, K104D, Q107K, H116N, I133T, F135Y, A151V, E152D, E176V, L198M; p17: L61I, T67N, L75I, E93G, K95T, K114Q; p2: -12N; p24: D128E, D180E, T200A, R203K, P207S; p6: N14S, E34G, H36C, S39I; p7: N5K, R11K, T50N; pro: V13I; rev: T8P, P31I, R39K, R50N, E57G, T62S, Q74P, G108E, T114A; tat: N24K, I36L, H54P, K63Q, T77N; vif: V31I, Q91L, K92R, Y135H, T155I, T157K; vpr: H15Y, I26L, N28G, V84I; vpu: Y7W, F16A, V20I, I28L, L33V, E44K, R45K, N80-, N81-, V82-"}}}]}]}]}]}]}, {"name": "A6_NODE_0000030", "node_attrs": {"div": 0.11641000000000001, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G1151A", "A2032G", "G2293A", "C2296T", "C2605A", "G3136A", "T3755A", "C3908T", "G4727A", "A5482G", "C5579T", "A6023G", "C6186A", "T6187C", "-6211C", "-6220G", "-6222A", "-6223T", "G6776A", "A6965-", "G7089A", "A7238G", "T7618C", "A8152G", "T8206C", "G8212A", "T8287C", "T8291C", "T8795G", "C9181T"], "gp120": ["A308T", "-385T", "R412K", "K462E"], "nef": ["A151E"], "p6": ["H36R"], "rev": ["I102V"], "tat": ["I36V", "P68L"], "vpu": ["-75A"]}, "labels": {"aa": "gp120: A308T, -385T, R412K, K462E; nef: A151E; p6: H36R; rev: I102V; tat: I36V, P68L; vpu: -75A"}}, "children": [{"name": "A6_NODE_0000031", "node_attrs": {"div": 0.12194000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A417C", "C435A", "G480A", "G1192A", "C1350T", "G1418A", "A1774G", "A1786C", "G1845A", "A1963G", "G2215A", "G2389A", "G2459A", "G2473A", "T2612G", "T2613C", "G2755A", "A3292G", "A3979G", "A4300G", "T4426C", "C4871T", "A4937G", "C5091T", "G5375A", "G5534A", "C5544A", "C5658A", "G5783A", "G5881A", "-6203A", "-6204G", "-6205C", "-6215A", "-6216G", "-6217T", "-6219T", "-6221T", "G6276A", "G6856A", "G6935A", "C6966-", "-6971A", "-6973T", "-6974A", "-6975C", "-6976T", "-6977G", "-6979C", "G6997C", "G6998A", "C7130T", "G7225A", "A7240G", "G7256A", "A7590G", "G7673A", "G7700A", "A8006G", "T8008G", "T8167C", "A8370-", "C8425T", "C8460T", "A8770T"], "RT-p51": ["E122K", "L173A"], "RT-p66": ["E122K", "L173A"], "gp120": ["M126-", "R141K", "G161-", "K240E", "A291T", "T292-", "D361N", "N414S", "V468I"], "gp41": ["N96S", "V124I", "D133N", "I235V"], "nef": ["H40Y", "Y143F"], "p17": ["K28Q", "L34I", "G49S"], "p24": ["R154K", "P207S"], "p6": ["D32G"], "pro": ["G16E"], "rev": ["D7N", "A10E", "T14K", "S54A", "S107P"], "tat": ["R53K", "H60Q"], "vpu": ["-70Y"]}, "labels": {"aa": "RT-p51: E122K, L173A; RT-p66: E122K, L173A; gp120: M126-, R141K, G161-, K240E, A291T, T292-, D361N, N414S, V468I; gp41: N96S, V124I, D133N, I235V; nef: H40Y, Y143F; p17: K28Q, L34I, G49S; p24: R154K, P207S; p6: D32G; pro: G16E; rev: D7N, A10E, T14K, S54A, S107P; tat: R53K, H60Q; vpu: -70Y"}}, "children": [{"name": "MH330351", "node_attrs": {"div": 0.14134000000000002, "accession": "MH330351", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2012.0}, "Strain_name": {"value": "BLG038"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C173G", "C175T", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A192-", "C193-", "A194-", "G195-", "G196-", "G197-", "T200C", "C201T", "G202-", 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"A8441G", "C8471T", "T8504C", "G8519A", "G8554A", "A8584T", "G8588A", "C8684T", "G8793C", "A8794T", "A8798T", "C8810T", "G8875A", "T8947A"], "INT": ["E3D", "I31V", "S39C", "L101I"], "RT-p51": ["T11A", "S123D", "I135V", "S158A", "V179I", "D248E", "A376T", "V381I", "V435M"], "RT-p66": ["T11A", "S123D", "I135V", "S158A", "V179I", "D248E", "A376T", "V381I", "V435M", "I452R", "K454R", "Y554N"], "gp120": ["A3T", "N5K", "N52D", "E59K", "P106L", "-109S", "S114N", "-117G", "-118R", "E125-", "K127-", "T135A", "N159S", "-161S", "S162G", "R164Y", "T172A", "V180I", "P203A", "E241Q", "T261K", "-292G", "D294V", "T319A", "K323Q", "-372N", "-373S", "-374T", "-375E", "N378-", "L425I", "T427I", "S433-", "N435S", "D446N", "K474R"], "gp41": ["N129S", "D148E", "N160T", "K172R", "I173M", "V197A", "L206F", "R221G", "H258R", "V271L", "I304V", "I321L", "F325L", "C330R", "I332V"], "nef": ["S8-", "S9-", "I10-", "V11-", "I20L", "R71K", "Y81F", "E151L", "E152D", "K192T", "F202Y"], "p17": ["T122A", "Q130L"], "p2": ["-10V", "A11N"], "p24": ["S14A", "S41T", "L83V", "D128E", "S149G"], "pro": ["I13V", "R57K"], "rev": ["K14R", "I18T", "R38W", "K39R", "D53R", "T62A", "C89S"], "tat": ["C31S", "P84L"], "vif": ["E37G", "K67R", "H80Q", "E92K", "I98V", "H127Q", "C192H"], "vpr": ["Y15H", "M19T", "D25E", "N48E"], "vpu": ["A11S", "F16A", "E44K"]}, "labels": {"aa": "INT: E3D, I31V, S39C, L101I; RT-p51: T11A, S123D, I135V, S158A, V179I, D248E, A376T, V381I, V435M; RT-p66: T11A, S123D, I135V, S158A, V179I, D248E, A376T, V381I, V435M, I452R, K454R, Y554N; gp120: A3T, N5K, N52D, E59K, P106L, -109S, S114N, -117G, -118R, E125-, K127-, T135A, N159S, -161S, S162G, R164Y, T172A, V180I, P203A, E241Q, T261K, -292G, D294V, T319A, K323Q, -372N, -373S, -374T, -375E, N378-, L425I, T427I, S433-, N435S, D446N, K474R; gp41: N129S, D148E, N160T, K172R, I173M, V197A, L206F, R221G, H258R, V271L, I304V, I321L, F325L, C330R, I332V; nef: S8-, S9-, I10-, V11-, I20L, R71K, Y81F, E151L, E152D, K192T, F202Y; p17: T122A, Q130L; p2: -10V, A11N; p24: S14A, S41T, L83V, D128E, S149G; pro: I13V, R57K; rev: K14R, I18T, R38W, K39R, D53R, T62A, C89S; tat: C31S, P84L; vif: E37G, K67R, H80Q, E92K, I98V, H127Q, C192H; vpr: Y15H, M19T, D25E, N48E; vpu: A11S, F16A, E44K"}}}, {"name": "MZ427749", "node_attrs": {"div": 0.15143, "accession": "MZ427749", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2019.0}, "Strain_name": {"value": "RU_ERS_2647_2019"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G256A", "T301A", "A303G", "G305T", "A374G", "T377C", "A388G", "A426C", "A431G", "T485C", "T495G", "A509G", "G518A", "A534G", "C537T", "C603A", "G614A", "A675-", "A676-", "G677-", "A678-", "C679-", "C680-", "C681-", "A682-", "A683-", "G686A", "T695C", "G696A", "A774C", "G860A", "A1067G", "C1094T", "A1158C", "G1173A", "T1174C", "T1271G", "G1339A", "A1370G", "C1385T", "C1406T", "A1450G", "G1452A", "G1487A", "C1535T", "A1719-", "A1720-", "C1721-", "T1741C", "A1759G", "A1772G", 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"vif": ["K50R"]}, "labels": {"aa": "RT-p51: T35I, A62V; RT-p66: T35I, A62V; gp120: G253S, T319I, N328-, K472R; gp41: I24L, F325L; nef: I28T, K178R; vif: K50R"}}, "children": [{"name": "A6_NODE_0000033", "node_attrs": {"div": 0.12015000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A1158C", "A1839G", "A1963G", "G2027A", "A3007G", "C4428T", "A4806G", "C5654T", "A6024C", "-6213T", "-6214A", "-6215A", "-6219A", "-6221A", "T6287C", "A6338C", "T6340G", "C6758T", "G7238C", "A7782G"], "gp120": ["D57A", "N108-", "T110-", "Y145H", "S162Q", "N312S", "N414S", "N437T", "E462Q"], "gp41": ["N160S", "C330R"], "pro": ["K14R", "V77I"], "vpr": ["G89V"]}, "labels": {"aa": "gp120: D57A, N108-, T110-, Y145H, S162Q, N312S, N414S, N437T, E462Q; gp41: N160S, C330R; pro: K14R, V77I; vpr: G89V"}}, "children": [{"name": "A6_NODE_0000034", "node_attrs": {"div": 0.12446000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A426C", "C516T", "A571T", "G860A", "G1487A", "C2075A", "T2499C", "A3099G", "A3808C", "A4175G", "G4693A", "C4992T", "G5418A", "A5499G", "G5783A", "A5828T", "T5956C", "T6199C", "-6217C", "C6321T", "G6327A", "A6329G", "A6335G", "T6337G", "G6571A", "C6726G", "T6735A", "A6959-", "A6960-", "A6962-", "C6966-", "A6989G", "C7354T", "A7626T", "G7712A", "C7932T", "G7964A", "G8005A", "A8032T", "A8402G"], "INT": ["E11D", "N134D"], "RT-p51": ["I135T", "D335G"], "RT-p66": ["I135T", "D335G"], "gp120": ["-123F", "-124E", "N159D", "A291G", "D368-", "N369-", "S370-", "T371-"], "gp41": ["Q108L", "E137K", "T210I"], "nef": ["I20M"], "p17": ["I31L", "Y79F"], "pro": ["L93I"], "rev": ["T62S"], "tat": ["P75S"], "vif": ["R36K", "P136S"]}, "labels": {"aa": "INT: E11D, N134D; RT-p51: I135T, D335G; RT-p66: I135T, D335G; gp120: -123F, -124E, N159D, A291G, D368-, N369-, S370-, T371-; gp41: Q108L, E137K, T210I; nef: I20M; p17: I31L, Y79F; pro: L93I; rev: T62S; tat: P75S; vif: R36K, P136S"}}, "children": [{"name": "MN703135", "node_attrs": {"div": 0.15095000000000003, "accession": "MN703135", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DEMA614RU011"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C201T", "A417C", "C426T", "C435A", "A461C", "T495G", "C535G", "C537G", "G542A", "A562G", "A614T", "A615G", "G665A", "C668T", "G677A", "A678G", "G696A", "C713T", "A714-", "A715-", "G716-", "G717-", "T718-", "C719-", "A720-", "G721-", "T722-", "T728C", "C731T", "A836G", "G987A", "A1017C", "G1019A", "T1064G", "C1136T", "C1158A", "C1330A", "A1352C", "C1406T", "G1418A", "A1459G", "G1472A", "C1535T", "T1646C", "A1718G", "A1781C", "A1784G", "T1954G", "G1963A", "A1967C", "C1985A", "T1986C", "A2002G", "A2056G", "T2080C", "T2104C", "G2155A", "G2224A", "T2257C", "G2273A", "T2281A", "G2329A", "G2332A", "T2365C", "T2369C", "A2403G", "A2404C", "A2455G", "A2508C", "G2530A", "T2567G", "C2589T", "A2626C", "G2682A", "C2694T", "T2737C", "A2767G", "A2828G", "G2926A", "G3004A", "T3068C", "C3095A", "A3136G", "A3217G", "G3221A", "C3222G", "A3292G", "T3319C", "T3355C", "T3380C", "G3385A", "G3463A", "C3542T", "A3592T", "A3655C", "A3755C", "A3795G", "G3825A", "A3834G", "A3890C", "T3908G", "A4027G", "A4040C", "A4096G", "C4144T", "G4231A", "G4276C", "T4510A", "A4650C", "T4652C", "T4701G", "G4726T", "G4779A", "C4807T", "A4856G", "A4858G", "G4870T", "G4895A", "C4943A", "C4976A", "G5065A", "G5087A", "G5185A", "T5224G", "G5375A", "A5431C", "G5482A", "T5484G", "A5537C", "A5575G", "T5600C", "A5602T", "A5603-", "A5611C", "C5612A", "A5613C", "C5614T", "T5653A", "T5654C", "T5704G", "C5769T", "C5795A", "A5865G", "A5867C", "C5869A", "C5878T", "G5917T", "C5989A", "A6019G", "G6023A", "C6024G", "A6044G", "T6046A", "T6163-", "A6164-", "C6165-", "T6166-", "G6167-", "A6168-", "A6169-", "C6170-", "C6171-", "C6172-", "A6173-", "A6174-", "C6175-", "A6176-", "G6177-", "C6178-", "A6179-", "C6180-", "G6183A", "A6188C", "A6189C", "T6196C", 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"T8887G", "A8892G", "C8917A", "C8934A", "C9039T", "T9092G", "C9108T", "-9109C"], "INT": ["K7R", "S17N", "K20R", "S39R", "L45V", "I84M", "I89L", "E167D", "T218I"], "RT-p51": ["V60I", "K103S", "E138A", "S158A", "T165I", "G196E", "T200I", "M245V", "Q334K", "A376S"], "RT-p66": ["V60I", "K103S", "E138A", "S158A", "T165I", "G196E", "T200I", "M245V", "Q334K", "A376S", "H483Y", "K520N", "Y554H"], "gp120": ["E4G", "N5Q", "E21D", "A57S", "N64E", "T104N", "E105-", "P106-", "S111N", "S112P", "T156M", "D157N", "H188Y", "A191T", "K201R", "E241K", "I255T", "E262K", "I279V", "H302Y", "R307K", "T308E", "N311T", "L314I", "K316N", "K323E", "-328N", "T360A", "D361G", "-379G", "-380T", "-381E", "-382I", "-383N", "-384A", "K412R", "S414M", "R416K", "N432G", "S433R"], "gp41": ["L24I", "N96T", "I125S", "K144M", "S157G", "V190L", "S192H", "V197A", "S265L", "G278S", "S298N", "I321L", "L325F", "R330Y"], "nef": ["T28P", "A49T", "F85V", "K104T", "Q107K", "Q125H", "E151S", "M182R", "K184E", "L198M"], "p17": ["K28Q", "L34I", "E42D", "S54A", "T67S", "L68V", "K76R", "E93D", "I94V", "T115A", "G121S", "S126-", "K127-", "V128-"], "p2": ["-12S"], "p24": ["M96L", "T200N"], "p6": ["E34D", "R36H"], "pro": ["L63T"], "rev": ["T8P", "T30A", "I55L", "I78L", "T114A"], "tat": ["K19Q", "V36M", "H54P", "N67D", "H76R"], "vif": ["N22H", "F39V", "R47I", "V65I", "T74V", "Q91R", "S95I", "S130R", "R160K"], "vpr": ["H40Q"], "vpu": ["T2H", "P3S", "F16T", "L33V", "E58D", "T63K", "-70L"]}, "labels": {"aa": "INT: K7R, S17N, K20R, S39R, L45V, I84M, I89L, E167D, T218I; RT-p51: V60I, K103S, E138A, S158A, T165I, G196E, T200I, M245V, Q334K, A376S; RT-p66: V60I, K103S, E138A, S158A, T165I, G196E, T200I, M245V, Q334K, A376S, H483Y, K520N, Y554H; gp120: E4G, N5Q, E21D, A57S, N64E, T104N, E105-, P106-, S111N, S112P, T156M, D157N, H188Y, A191T, K201R, E241K, I255T, E262K, I279V, H302Y, R307K, T308E, N311T, L314I, K316N, K323E, -328N, T360A, D361G, -379G, -380T, -381E, -382I, -383N, -384A, K412R, S414M, R416K, N432G, S433R; gp41: L24I, N96T, I125S, K144M, S157G, V190L, S192H, V197A, S265L, G278S, S298N, I321L, L325F, R330Y; nef: T28P, A49T, F85V, K104T, Q107K, Q125H, E151S, M182R, K184E, L198M; p17: K28Q, L34I, E42D, S54A, T67S, L68V, K76R, E93D, I94V, T115A, G121S, S126-, K127-, V128-; p2: -12S; p24: M96L, T200N; p6: E34D, R36H; pro: L63T; rev: T8P, T30A, I55L, I78L, T114A; tat: K19Q, V36M, H54P, N67D, H76R; vif: N22H, F39V, R47I, V65I, T74V, Q91R, S95I, S130R, R160K; vpr: H40Q; vpu: T2H, P3S, F16T, L33V, E58D, T63K, -70L"}}}, {"name": "JF683763", "node_attrs": {"div": 0.14284000000000002, "accession": "JF683763", "clade_membership": {"value": "A6"}, "country": {"value": "CY"}, "date": {"value": 2007.0}, "Strain_name": {"value": "CY213"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A353C", "G378A", "C558T", "T596G", "A619G", "A661C", "G716A", "C763T", "G1232A", "T1271G", "A1329G", "G1365C", "G1390C", "-1455A", "-1456A", "-1457C", "A1459T", "C1460A", "A1463G", "A1607G", "G1642A", "T1723G", "T1724G", "G1731A", "A1786G", "A2210G", "T2770G", "G2925A", "G3037A", "A3046C", "G3236A", "A3451G", "G3631C", "A3644G", "A3679G", "G3796A", "G3965T", "G4028C", "A4107T", "A4108C", "G4151A", "T4234C", "G4243A", "G4274A", "A4323T", "G4366A", "T4428C", "A4696G", "G4735A", "C4761T", "G4806A", "C4820T", "G4860A", "T4916C", "A4937C", "G4959A", "T5018G", "C5019T", "C5056A", "A5057G", "T5147C", "C5180A", "C5221T", "A5236G", "A5247G", "C5292T", "G5330A", "G5355A", "T5371G", "A5555G", "A5563G", "A5581G", "A5613T", "T5670G", "A5703G", "A5804G", "C5826T", "T5829G", "C5833T", "G5861A", "A5866C", "C5968T", "A5995T", "A6022G", "A6168C", "T6184C", "A6185T", "A6186C", "C6187T", "-6201T", "C6202T", "-6203A", "-6204A", "-6205C", "-6210A", "T6213G", "-6216A", "-6218G", "G6220T", "A6222G", "A6234G", "C6263A", "A6324G", "A6368G", "C6397T", "A6456T", "G6457A", "C6461A", "A6465C", "C6482G", "A6489G", "A6525G", "A6565G", "G6593A", "A6672C", "C6745T", "T6758C", "G6771A", "A6781T", "G6802A", 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"P210A", "K212R", "K224R", "E247K", "N273T", "S306N", "-326G", "S337T", "V343I", "N364S", "N378-", "-384D", "N434S", "S436E", "E438-", "T439-", "V468I", "K474R"], "gp41": ["Q32K", "S42N", "K77R", "S101T", "S109E", "E110D", "D113N", "K122R", "I130T", "D133E", "D148E", "H212N", "G215E", "R231S", "I235V", "A243S", "S256L", "I307L", "A312G", "G313R", "V318I", "P333L"], "p1": ["R4K"], "p17": ["A15T", "L75F", "C87W", "K95R", "N109T"], "p2": ["-10A", "A11N", "-12I", "I13M"], "p24": ["T11I", "D180E", "T200A", "E212Q", "G220A"], "p6": ["F15W", "G18R"], "rev": ["T14A", "T30K", "D53S", "S61E", "S67P", "A68T", "Q74P", "S92F"], "tat": ["H60R", "K63E", "I69V", "H76Q", "D80N"], "vif": ["E37G", "R50K", "E92K", "E117D", "V125I", "T157K"], "vpr": ["Y15H", "L26I", "N48S", "T63I", "V84M", "V89G"], "vpu": ["M65-", "E66-", "V67M", "N69V", "-72G", "-73N", "-74L", "L76F"]}, "labels": {"aa": "INT: D64Y, E85Q, K111I, V126I, E167K, H183L; RT-p51: K39E, R277K, V381I; RT-p66: K39E, R277K, V381I, I452M, R512S, I517V, Y554N; gp120: A3T, E4D, I56M, E105A, -107N, -108S, -109T, -110S, S112N, -117N, -118R, -119N, -120D, -121S, -122M, K127R, L137I, T156I, D157G, T172A, K201I, P203T, N204T, P210A, K212R, K224R, E247K, N273T, S306N, -326G, S337T, V343I, N364S, N378-, -384D, N434S, S436E, E438-, T439-, V468I, K474R; gp41: Q32K, S42N, K77R, S101T, S109E, E110D, D113N, K122R, I130T, D133E, D148E, H212N, G215E, R231S, I235V, A243S, S256L, I307L, A312G, G313R, V318I, P333L; p1: R4K; p17: A15T, L75F, C87W, K95R, N109T; p2: -10A, A11N, -12I, I13M; p24: T11I, D180E, T200A, E212Q, G220A; p6: F15W, G18R; rev: T14A, T30K, D53S, S61E, S67P, A68T, Q74P, S92F; tat: H60R, K63E, I69V, H76Q, D80N; vif: E37G, R50K, E92K, E117D, V125I, T157K; vpr: Y15H, L26I, N48S, T63I, V84M, V89G; vpu: M65-, E66-, V67M, N69V, -72G, -73N, -74L, L76F"}}}]}, {"name": "A6_NODE_0000035", "node_attrs": {"div": 0.12083000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A1835G", "A1891G", "A3755T", "G6207-", "C6208-", "A6212T", "T6223A", "-6956G", "-6958C", "-6961T", "-6963G", "-6964T", "-6965A", "-6967T", "T7321C", "C8425G"], "INT": ["T218I"], "gp41": ["R221G"], "nef": ["T28R", "K192T"], "pro": ["I13V"], "rev": ["K39R"]}, "labels": {"aa": "INT: T218I; gp41: R221G; nef: T28R, K192T; pro: I13V; rev: K39R"}}, "children": [{"name": "A6_NODE_0000036", "node_attrs": {"div": 0.12395000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C435A", "T495G", "C606A", "A941G", "T978A", "C1115A", "A1449G", "A1450G", "T1986C", "T3303C", "G3859A", "G4860A", "C5180A", "A5576C", "T5778C", "A5781G", "A5845G", "A6050G", "G6183C", "A6189C", "G6195A", "-6201G", "T6242A", "C6461A", "G6593A", "G6771A", "A6983-", "A7005G", "C7238A", "C8494A", "A8666C", "T9028-"], "RT-p51": ["M403T"], "RT-p66": ["M403T"], "gp120": ["N66D", "S130T", "P203T", "E247K", "H302Y", "S306N", "-326K", "Q462K"], "gp41": ["S109N"], "nef": ["I10L", "T51N", "E108D"], "p17": ["L34I", "S54A"], "p2": ["N9G", "-12N"], "p24": ["D128E"], "pro": ["L63P"], "rev": ["I21L"], "tat": ["N67T"], "vif": ["E92K"], "vpr": ["L26I", "H28Q"], "vpu": ["-72G", "-73N", "N80D"]}, "labels": {"aa": "RT-p51: M403T; RT-p66: M403T; gp120: N66D, S130T, P203T, E247K, H302Y, S306N, -326K, Q462K; gp41: S109N; nef: I10L, T51N, E108D; p17: L34I, S54A; p2: N9G, -12N; p24: D128E; pro: L63P; rev: I21L; tat: N67T; vif: E92K; vpr: L26I, H28Q; vpu: -72G, -73N, N80D"}}, "children": [{"name": "MH330354", "node_attrs": {"div": 0.14404000000000003, "accession": "MH330354", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2012.0}, "Strain_name": {"value": "BLG044"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A302G", "A304T", "A305-", "A353G", "G407A", "A461G", "C531T", "G860A", "T979C", "A1079C", "A1097C", "T1143C", "G1173A", "T1174C", "A1292C", "T1316C", "A1433C", "C1536A", "A1720T", "T1723G", "A1766G", "A1846G", "G1963A", "T1987C", "T2024C", "A2340G", 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"G6333A", "C6338G", "A6339G", "G6340A", "G6425A", "A6464G", "T6466G", "T6541A", "A6572G", "G6575A", "A6616G", "G6638A", "G6668A", "G6669A", "T6738C", "A6764G", "T6766A", "C6780A", "A6800G", "A6809T", "T6810C", "A6823C", "T6835G", "G6856A", "T6863A", "G6881A", "G6935A", "A6936G", "C6958T", "T6964C", "-6982G", "-6983T", "A6986C", "T6988-", "C7014T", "G7054A", "A7089G", "T7096G", "C7130A", "G7155C", "G7162A", "G7366A", "A7531G", "A7590C", "C7625A", "A7626T", "G7633A", "G7753A", "T7825C", "T7913G", "G7921A", "T7929C", "G7956A", "C7988A", "G8005C", "A8014G", "A8032G", "T8060G", "C8097T", "A8173G", "A8222T", "C8276A", "A8370C", "G8409A", "G8425T", "C8471T", "T8498C", "T8501C", "C8552T", "G8576A", "A8739G", "G8793C", "A8804G", "G8808A", "C8855T", "G8870A", "G8882A", "G8894A", "G8905A", "G9020T", "C9023G", "G9024T", "A9026G", "G9027A", "-9028G", "C9091T", "A9106G", "G9138A"], "INT": ["E3D", "K20R", "I31V", "V32I", "V113I"], "RT-p51": ["K82R", "D121H", "I135T", "K166Q", "L173S", "T200I", "D335G", "V381I", "Q394N"], "RT-p66": ["K82R", "D121H", "I135T", "K166Q", "L173S", "T200I", "D335G", "V381I", "Q394N", "T470N", "Y554N", "R558K"], "gp120": ["N5H", "K93Q", "E105D", "P106-", "S111-", "S112-", "N113-", "S114-", "S115-", "S116-", "S155P", "Q162E", "A191T", "N204E", "K240E", "E241K", "E262K", "G272N", "Y290V", "A291T", "T292-", "G293-", "D294-", "I295-", "N304E", "A309E", "K316E", "I319S", "K323N", "S337T", "V343I", "D361S", "-379N", "-380T", "-381E", "-382A", "-383N", "-384G", "T387I", "K412R", "S414R", "L426I", "N432G", "S433G"], "gp41": ["L24M", "N96T", "Q108M", "L204V", "L209P", "R218K", "Q229K", "C253G", "S265L", "I307L", "L325I"], "nef": ["A23T", "R28I", "I133V", "E151Q", "A156T", "R188H"], "p17": ["P66S"], "p24": ["L83T", "V148T", "E187D"], "p6": ["N14I", "F15C", "R36S", "P38S", "S39I"], "p7": ["L24I"], "rev": ["A10V", "A15T", "V16I", "A47E", "D53H", "S56G", "T62A", "V71G", "I109V"], "tat": ["N12K", "S61N", "S62N", "K63Q", "G83S"], "vif": ["R17K", "N22H", "F39V", "H48N", "T74A", "I124L", "P136S", "K151R", "L153I", "K168R"], "vpr": ["P37T"], "vpu": ["I20V", "E60D", "L61A", "S62E", "T63E", "M65S", "V67L", "G68M", "N69-", "-70E", "-71V", "-74Y"]}, "labels": {"aa": "INT: E3D, K20R, I31V, V32I, V113I; RT-p51: K82R, D121H, I135T, K166Q, L173S, T200I, D335G, V381I, Q394N; RT-p66: K82R, D121H, I135T, K166Q, L173S, T200I, D335G, V381I, Q394N, T470N, Y554N, R558K; gp120: N5H, K93Q, E105D, P106-, S111-, S112-, N113-, S114-, S115-, S116-, S155P, Q162E, A191T, N204E, K240E, E241K, E262K, G272N, Y290V, A291T, T292-, G293-, D294-, I295-, N304E, A309E, K316E, I319S, K323N, S337T, V343I, D361S, -379N, -380T, -381E, -382A, -383N, -384G, T387I, K412R, S414R, L426I, N432G, S433G; gp41: L24M, N96T, Q108M, L204V, L209P, R218K, Q229K, C253G, S265L, I307L, L325I; nef: A23T, R28I, I133V, E151Q, A156T, R188H; p17: P66S; p24: L83T, V148T, E187D; p6: N14I, F15C, R36S, P38S, S39I; p7: L24I; rev: A10V, A15T, V16I, A47E, D53H, S56G, T62A, V71G, I109V; tat: N12K, S61N, S62N, K63Q, G83S; vif: R17K, N22H, F39V, H48N, T74A, I124L, P136S, K151R, L153I, K168R; vpr: P37T; vpu: I20V, E60D, L61A, S62E, T63E, M65S, V67L, G68M, N69-, -70E, -71V, -74Y"}}}, {"name": "JQ292893", "node_attrs": {"div": 0.14292000000000002, "accession": "JQ292893", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2008.0}, "Strain_name": {"value": "RUA001"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C84T", "T86C", "G88C", "A89T", "G90T", "G121A", "G159A", "G161A", "T227A", "A278G", "G279A", "-280G", "T301C", "G354A", "C362T", "C393A", "A412G", "A417C", "G480A", "A534T", "C537A", "A562G", "G621A", "A653G", "A654C", "G716T", "C731T", "C734T", "T771C", "C1040T", "A1046G", "C1187T", "G1339A", "C1350T", "G1452-", "C1453-", "A1454-", "-1455G", "-1456C", "-1457C", "C1490T", "C1595T", "G1640A", "A1661G", "A1697G", "A1718G", "A1781G", "C1785T", "A1786G", "G1839A", "C1853A", "A2050C", "A2059G", "A2182G", "A2300T", "G2389A", "G2459A", "G2463A", "C2467T", "A2551C", "T2612G", "T2829C", "T2890C", "A2923C", "C3023T", "A3096T", "G3398A", "C3497T", "G3709A", "T3779C", "A3838T", "T3962G", "G4060A", "G4063A", "T4153G", "G4354A", "C4357T", "A4369G", "G4616A", "T4652C", "A4696G", "G4806A", "G4865A", "G4959T", "C4965A", "T5016C", "A5062C", "G5086A", "T5188A", "G5215A", "C5221T", "G5312A", "G5482A", "C5556T", "T5568C", "T5579C", "C5599A", "A5623G", "C5630T", "G5635A", "A5643T", "G5644A", "T5654C", "A5656G", "G5700A", "A5718G", "G5739A", "A5796G", "A5804G", "A5828T", "C5833T", "G5861A", "G5881A", "G5882A", "A5914T", "C5924T", "A5947G", "A6030G", "A6164G", "A6186G", "A6188T", "C6190T", "T6196C", "A6206-", "A6209-", "C6211G", "-6216C", "-6217A", "-6218G", "A6219C", "G6220A", "A6222C", "A6225C", "A6226G", "A6228T", "A6229G", "G6232A", "C6263T", "A6316G", "G6323A", "G6327A", "A6329G", "A6330G", "A6335G", "T6337G", "T6355C", "A6368G", "A6395T", "T6445C", "G6451A", "C6462T", "A6489G", "G6577T", "A6589G", "A6595G", "A6611G", "G6743A", "A6764T", "G6767A", "C6769G", "C6790A", "A6822C", "T6835A", "C6862T", "T6875A", "A6931C", "T6961A", "G6963A", "A6965G", "C6966A", "T6967C", "-6968A", "-6969C", "-6970T", "-6971A", "-6972T", "-6973C", "-6974A", "-6975C", "C6984-", "A6990C", "A6992C", "C6999T", "A7040G", "G7067A", "A7129G", "C7134T", "A7158G", "A7181G", "C7201T", "C7354T", "A7373C", "T7630G", "A7688G", "C7690A", "T7702G", "T7813C", "A7818G", "T7893C", "C7912T", "G7921T", "G8019T", "C8071T", "A8213G", "A8264G", "C8291T", "A8370T", "A8447G", "G8453A", "C8460T", "T8492C", "A8584T", "T8595G", "G8909A", "C8990T", "A9026-", "G9027-", "T9029-", "G9030-", "G9031-", "G9032-", "G9033-", "G9037C"], "INT": ["L63V", "V281M"], "RT-p51": ["T69S", "E122K", "S123N", "L173V", "M245T", "Q334L", "V435I"], "RT-p66": ["T69S", "E122K", "S123N", "L173V", "M245T", "Q334L", "V435I", "P468S"], "gp120": ["A3T", "V10I", "E59G", "T104A", "-107N", "-108N", "-109S", "-110T", "S114N", "D157N", "N159G", "T172A", "T181S", "T203I", "K212R", "E241D", "S253G", "D294A", "D297N", "N304Y", "V305M", "S312R", "K323T", "L341I", "S370G", "N378-", "I396V", "A405T", "T427I", "N432E", "S433T", "N435S", "T437S", "I443V"], "gp41": ["N109K", "N129E", "D133E", "K172R", "V197A", "L206F", "S239I", "I304V", "I321V", "R330C"], "nef": ["H40Y", "Y81F", "F85V"], "p17": ["V7I", "K26R", "K28Q", "G49S", "T67S", "L68I", "K76R", "D96N", "I107L", "K127N"], "p24": ["S14P", "L83I", "R203K", "P207S"], "p6": ["R36C"], "pro": ["R14K", "L19I"], "rev": ["T14I", "I18T", "E57D"], "tat": ["V36I", "L68P"], "vif": ["E37G", "V125L", "H127N", "S144P", "E159A", "R167K"], "vpr": ["V70I"], "vpu": ["I6V", "A8V", "V10I", "L12F", "V13I", "F16S", "I17V", "M65-", "E66-", "V67M", "N69V", "-74L", "L76F"]}, "labels": {"aa": "INT: L63V, V281M; RT-p51: T69S, E122K, S123N, L173V, M245T, Q334L, V435I; RT-p66: T69S, E122K, S123N, L173V, M245T, Q334L, V435I, P468S; gp120: A3T, V10I, E59G, T104A, -107N, -108N, -109S, -110T, S114N, D157N, N159G, T172A, T181S, T203I, K212R, E241D, S253G, D294A, D297N, N304Y, V305M, S312R, K323T, L341I, S370G, N378-, I396V, A405T, T427I, N432E, S433T, N435S, T437S, I443V; gp41: N109K, N129E, D133E, K172R, V197A, L206F, S239I, I304V, I321V, R330C; nef: H40Y, Y81F, F85V; p17: V7I, K26R, K28Q, G49S, T67S, L68I, K76R, D96N, I107L, K127N; p24: S14P, L83I, R203K, P207S; p6: R36C; pro: R14K, L19I; rev: T14I, I18T, E57D; tat: V36I, L68P; vif: E37G, V125L, H127N, S144P, E159A, R167K; vpr: V70I; vpu: I6V, A8V, V10I, L12F, V13I, F16S, I17V, M65-, E66-, V67M, N69V, -74L, L76F"}}}]}, {"name": "A6_NODE_0000037", "node_attrs": {"div": 0.12135000000000003, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C1103T", "A1786C", "A6169G", "A6200-", "C6777A", "A6996-", "C8597T"], "gp120": ["T308E", "-328N", "-374T", "N434S"], "p2": ["-10V", "A11N"], "vif": ["T74A"]}, "labels": {"aa": "gp120: T308E, -328N, -374T, N434S; p2: -10V, A11N; vif: T74A"}}, "children": [{"name": "JQ292895", "node_attrs": {"div": 0.13693000000000002, "accession": "JQ292895", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2005.0}, "Strain_name": {"value": "RU_560_1125_JA"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A278G", "G279A", "-280G", "C284G", "T291G", "G298C", "A304G", "T372C", "G480A", "C531T", "A578C", "G866A", "C917T", "G1109A", "C1350T", "C1453T", "G1472A", "A1499G", "T1502A", "G1508A", "A1586G", "C1595A", "T1724G", "G1731A", "A1759T", "A1784G", "G1852A", "T1888C", "A2006C", "G2074A", "T2129C", "T2449G", "T2499C", "G2518A", "A2662C", "T2829C", "G3236A", "A3284G", "C3285T", "G3340A", "T3450A", "G3709A", "A3748G", "G3787A", "A3866G", "G3896A", "G4060A", "G4112A", "A4175G", "C4576T", "T4702G", "C4728A", "C4977A", "G5131A", "T5224G", "A5246G", "C5292T", "C5599T", "C5612T", "A5621G", "A5623C", "T5624C", "C5625T", "A5627T", "T5628A", "A5656T", "A5781G", "A5794G", "C5827T", "A5848G", "G5893A", "A5962G", "C6148T", "A6164G", "T6184C", "A6185T", "A6186C", "C6187T", "A6189G", "T6199C", "C6202-", "A6206-", "A6209-", "C6211G", "-6216C", "-6217A", "-6218G", "G6220A", "A6222C", "A6225C", "A6228C", "A6229G", "G6232A", "T6242A", "A6279G", "A6303G", "G6333A", "C6347T", "T6355C", "A6368G", "T6466A", "A6565G", "A6572G", "A6574G", "A6581G", "G6612C", "T6618C", "C6636A", "T6735A", "A6757G", "T6758C", "A6776G", "C6790A", "C6850A", "A6855C", "T6875G", "A6950T", "T6964C", "-6980G", "-6981T", "-6982C", "A6990T", "A6994-", "G6995-", "G6997A", "G6998A", "T7015C", "A7158G", "T7159C", "G7160A", "A7161G", "G7162C", "C7164A", "C7165T", "-7166G", "-7167A", "-7168G", "-7169A", "-7170C", "-7171C", "A7181C", "T7182A", "C7238A", "G7256C", "G7269A", "A7318G", "A7373C", "A7439C", "G7440A", "A7522G", "G7627A", "A7628G", "A7641G", "C7651T", "G7712A", "G7759A", "T7762C", "G7790A", "A7818G", "G7965A", "G7980A", "G7985A", "G7992A", "G8005A", "A8006G", "A8011C", "C8056T", "C8062T", "A8069C", "G8070T", "C8097T", "C8232T", "G8388A", "A8399G", "A8435G", "T8501C", "C8831T", "A8858T"], "INT": ["I31V", "D41N", "V113I", "N134D"], "RT-p51": ["I135T", "M245T", "V381I", "T397V"], "RT-p66": ["I135T", "M245T", "V381I", "T397V", "I452K"], "gp120": ["T104A", "-107N", "-108S", "-109T", "-110S", "S116-", "S130T", "K142R", "K150R", "N158S", "S160N", "G161S", "T172A", "N204K", "K240E", "M243V", "S253T", "I255T", "T261N", "S312R", "K334T", "L341V", "T366S", "N369D", "S370N", "-372T", "-373V", "-375N", "-376I", "N378T", "-379N", "-380E", "N435S", "T437N", "I443Q", "Q462K", "V468L", "R472K"], "gp41": ["R46Q", "S109D", "D113G", "E137K", "D163N", "K172R", "G221E", "G226D", "E228K", "G230D", "I235V", "S256L", "S265L", "A310V"], "nef": ["V16I"], "p17": ["G49S", "P66S"], "p24": ["P207S"], "p6": ["F15L", "G18R", "K27I", "R36G"], "pro": ["K70Q"], "rev": ["R46K", "D53S", "I55L", "P70S", "P72S", "Q74P"], "tat": ["E86K"], "vif": ["F39C", "H48N", "P131T", "G182D"], "vpr": ["H40Q", "N48D", "T63I"], "vpu": ["T2I", "E5G", "I17F", "T63A", "-70Y", "N81D"]}, "labels": {"aa": "INT: I31V, D41N, V113I, N134D; RT-p51: I135T, M245T, V381I, T397V; RT-p66: I135T, M245T, V381I, T397V, I452K; gp120: T104A, -107N, -108S, -109T, -110S, S116-, S130T, K142R, K150R, N158S, S160N, G161S, T172A, N204K, K240E, M243V, S253T, I255T, T261N, S312R, K334T, L341V, T366S, N369D, S370N, -372T, -373V, -375N, -376I, N378T, -379N, -380E, N435S, T437N, I443Q, Q462K, V468L, R472K; gp41: R46Q, S109D, D113G, E137K, D163N, K172R, G221E, G226D, E228K, G230D, I235V, S256L, S265L, A310V; nef: V16I; p17: G49S, P66S; p24: P207S; p6: F15L, G18R, K27I, R36G; pro: K70Q; rev: R46K, D53S, I55L, P70S, P72S, Q74P; tat: E86K; vif: F39C, H48N, P131T, G182D; vpr: H40Q, N48D, T63I; vpu: T2I, E5G, I17F, T63A, -70Y, N81D"}}}, {"name": "A6_NODE_0000038", "node_attrs": {"div": 0.12369000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C96T", "A353G", "C606A", "A619G", "G992A", "G2363A", "C2467T", "G2921A", "G2925A", "A3988G", "C5214A", "G5355A", "G5357A", "A6214T", "A6225G", "C6287T", "T6810C", "-6969G", "-6971A", "A6994T", "G6997-", "G6998-", "C6999-", "C7000-", "A7123T", "G7190A", "A7629G", "G8329A", "A8739G", "A8798G", "C8934A", "C9023T"], "RT-p51": ["V90I", "V276I", "R277K"], "RT-p66": ["V90I", "V276I", "R277K"], "gp120": ["H145Y", "H302Y", "I319T", "-373S", "T385-", "D446N"], "nef": ["I133V", "L198M"], "p17": ["K95R"], "p6": ["R36P", "P38S", "S39I"], "vpr": ["P37Q"]}, "labels": {"aa": "RT-p51: V90I, V276I, R277K; RT-p66: V90I, V276I, R277K; gp120: H145Y, H302Y, I319T, -373S, T385-, D446N; nef: I133V, L198M; p17: K95R; p6: R36P, P38S, S39I; vpr: P37Q"}}, "children": [{"name": "JX500696", "node_attrs": {"div": 0.1476, "accession": "JX500696", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10RU6617"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A97G", "G112A", "G121A", "A132G", "A166-", "C201T", "T214G", "-215T", "-216T", "A224T", "T227A", "G240A", "G365A", 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D446N, K474R; gp41: K172R, A189V; nef: E152A; p17: T67A, I107L; tat: L68P; vif: H48N"}}, "children": [{"name": "JQ292894", "node_attrs": {"div": 0.14096000000000003, "accession": "JQ292894", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2008.0}, "Strain_name": {"value": "RUA007"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A59C", "G62C", "A66T", "A67-", "G68-", "C69-", "C70-", "T71-", "C72-", "A73-", "A74-", "T75-", "A76-", "A77-", "A78-", "G79-", "C80-", "T81-", "T82-", "G83-", "C84-", "C85-", "T86-", "T87-", "G88-", "A89-", "G90-", "C127T", "A417C", "A426C", "G480A", "A611G", "C679A", "C713T", "A839G", "A1145G", "C1187T", "C1220T", "C1299T", "C1350T", "A1448G", "G1452A", "T1478C", "T1511C", "A1588G", "A1673G", "C1721G", "C1744A", "C1749-", "C1750-", "T1752C", "A1771G", "A1781G", "G1845A", "A1891G", "A1918G", "A1963G", "C1979G", "A1984T", "G2074A", "A2101C", "T2296C", "T2365C", "G2469A", "T2506C", "G2675A", "A2788G", 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"E228K", "G230D", "S265L", "N302T", "I321V", "I329L", "C330R"], "nef": ["V16I", "T51N", "L91F", "I133V", "F135Y", "D174E", "K192T"], "p17": ["K28Q", "I31L", "G49S", "I92M", "T115N"], "p2": ["-10T", "A11N"], "p24": ["P207S"], "p6": ["D14E", "T22N", "P24-", "S25P", "K31R", "R36H"], "p7": ["K41R"], "pro": ["G16E", "Q61E"], "rev": ["R46K", "D53N"], "tat": ["H60Y", "K63Q", "E85K"], "vif": ["E37G", "F39V", "T74A", "L102M", "P136S"], "vpr": ["V84L"], "vpu": ["T2Q", "A8S", "V13A", "F16S", "I17V", "I25L", "L33V", "-70Y", "L76V", "N80D"]}, "labels": {"aa": "INT: E3D, D270E; RT-p51: R125K, E194K, D335E, V381I; RT-p66: R125K, E194K, D335E, V381I, E516K, Y554K; gp120: D57A, E59G, E105K, N108S, S109T, T110S, S112N, -117G, -118V, -119E, -120E, -121M, -122R, K127-, S130T, M133I, T156-, D157-, N158-, N159-, S160T, V180I, K201R, E241K, S253G, P263S, D294A, H302Y, A309E, N312S, T313A, K323E, -326K, N369E, S370N, -373V, -374T, -381G, R416T, E418T, T427I, N432T, S433N, N435T, S436T, T439I, R472K; gp41: A6V, L24M, T25A, K90R, K106R, D109N, D133N, D153N, L206F, G220E, K223N, E228K, G230D, S265L, N302T, I321V, I329L, C330R; nef: V16I, T51N, L91F, I133V, F135Y, D174E, K192T; p17: K28Q, I31L, G49S, I92M, T115N; p2: -10T, A11N; p24: P207S; p6: D14E, T22N, P24-, S25P, K31R, R36H; p7: K41R; pro: G16E, Q61E; rev: R46K, D53N; tat: H60Y, K63Q, E85K; vif: E37G, F39V, T74A, L102M, P136S; vpr: V84L; vpu: T2Q, A8S, V13A, F16S, I17V, I25L, L33V, -70Y, L76V, N80D"}}}, {"name": "MH330356", "node_attrs": {"div": 0.14918, "accession": "MH330356", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2012.0}, "Strain_name": {"value": "BLG051"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C201T", "G206A", "T214A", "-215G", "-216T", "-217T", "T227C", "A261G", "A278G", "G279C", "-280G", "T301A", "A303G", "G304A", "A305T", "A353G", "A388G", "G401A", "A412G", "A615G", "A619G", "G696A", "A762G", "C763T", "C767T", "G776A", "A833G", "T851C", "T852A", 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"T7888A", "T7893C", "C7912A", "C7960A", "G7997A", "C8056T", "G8196A", "A8213G", "C8238G", "T8257C", "C8291T", "A8328G", "G8329A", "C8382T", "A8458G", "A8461G", "G8490A", "C8507T", "A8531C", "G8558A", "G8576A", "A8584T", "T8594G", "C8699T", "T8740C", "G8762A", "A8770T", "G8795T", "A8815T", "C8855T", "T8883C", "G8905A", "C8917A", "C8934A", "T8947A", "A8967T", "G8970A", "C8971G", "G9030T", "T9071C", "C9108-", "-9109T"], "INT": ["I31V", "N134D", "Q136H"], "RT-p51": ["V60I", "D121H", "S123G", "M245V", "R277K", "V317A", "E399D"], "RT-p66": ["V60I", "D121H", "S123G", "M245V", "R277K", "V317A", "E399D", "K476Q"], "gp120": ["E59K", "K93Q", "N102D", "T104I", "E105D", "L106F", "S114N", "-117S", "-118H", "-119M", "S155P", "N159S", "G161R", "S162H", "N167S", "M173V", "T181S", "D202E", "P203K", "N206T", "T208K", "P210Q", "I255T", "I269L", "P271H", "G272N", "D294E", "I298P", "K300R", "T308A", "N312R", "Q315H", "K316G", "R322K", "-326P", "I332K", "V343I", "D368E", "-372V", "-373T", "-379N", "-381N", "T385N", "M398L", "Q404R", "N414I", "E418N", "N420T", "S436E", "N437T", "E479Q"], "gp41": ["I2V", "N96A", "S101I", "Q108Y", "E110D", "D113G", "K122R", "D133G", "E137D", "N160S", "S165T", "N166S", "N195K", "V197A", "R221G", "D232N", "S298N", "I304V", "A312G", "K342R"], "nef": ["P14S", "K39R", "H40R", "A50T", "E63D", "Y81F", "I133T", "Y143F", "E151D", "E158V", "R188H", "L198M", "F202Y"], "p17": ["K18R", "K26R", "I94V", "K95R", "G121S"], "p2": ["N9G", "-12N", "I13V"], "p24": ["T11V", "M15I", "S41T", "L83T", "I124V", "D128E", "E187D", "G225S"], "p6": ["F15L", "R18K", "E19G", "T22V", "K27R"], "p7": ["K20R"], "pro": ["G16A", "N37D", "K41R", "L63P", "V77I"], "rev": ["I21L", "S25N", "K39R", "R50K", "P70S"], "tat": ["V36I", "N67T", "P84Q"], "vif": ["R36K", "F39C", "R63K", "H80Q", "S130R", "A137T", "A152V", "P161T", "P177H"], "vpr": ["V84G"], "vpu": ["V15A", "F16L", "I18L", "V21I", "Y30V", "R31S", "M65-", "E66-", "V67M", "N69V", "-72G", "-73N", "-74L", "L76F", "L77V"]}, "labels": {"aa": "INT: I31V, N134D, Q136H; RT-p51: V60I, D121H, S123G, M245V, R277K, V317A, E399D; RT-p66: V60I, D121H, S123G, M245V, R277K, V317A, E399D, K476Q; gp120: E59K, K93Q, N102D, T104I, E105D, L106F, S114N, -117S, -118H, -119M, S155P, N159S, G161R, S162H, N167S, M173V, T181S, D202E, P203K, N206T, T208K, P210Q, I255T, I269L, P271H, G272N, D294E, I298P, K300R, T308A, N312R, Q315H, K316G, R322K, -326P, I332K, V343I, D368E, -372V, -373T, -379N, -381N, T385N, M398L, Q404R, N414I, E418N, N420T, S436E, N437T, E479Q; gp41: I2V, N96A, S101I, Q108Y, E110D, D113G, K122R, D133G, E137D, N160S, S165T, N166S, N195K, V197A, R221G, D232N, S298N, I304V, A312G, K342R; nef: P14S, K39R, H40R, A50T, E63D, Y81F, I133T, Y143F, E151D, E158V, R188H, L198M, F202Y; p17: K18R, K26R, I94V, K95R, G121S; p2: N9G, -12N, I13V; p24: T11V, M15I, S41T, L83T, I124V, D128E, E187D, G225S; p6: F15L, R18K, E19G, T22V, K27R; p7: K20R; pro: G16A, N37D, K41R, L63P, V77I; rev: I21L, S25N, K39R, R50K, P70S; tat: V36I, N67T, P84Q; vif: R36K, F39C, R63K, H80Q, S130R, A137T, A152V, P161T, P177H; vpr: V84G; vpu: V15A, F16L, I18L, V21I, Y30V, R31S, M65-, E66-, V67M, N69V, -72G, -73N, -74L, L76F, L77V"}}}]}, {"name": "A6_NODE_0000041", "node_attrs": {"div": 0.12089000000000003, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T495G", "C606A", "T1741-", "C6148T", "G6177-", "A6936G", "C6999-", "A7628G", "A7831G", "A8328G", "A8370-", "A8402G", "G8576A", "C8917A"], "RT-p66": ["Y554N"], "gp120": ["S111N", "D361G", "D368N"], "gp41": ["I176M", "K342R"], "nef": ["I20M"], "p17": ["S54A"], "p2": ["-12N"], "vpu": ["F16A", "A75-", "L76-", "L77-", "D78-", "D79-", "N80-", "N81-"]}, "labels": {"aa": "RT-p66: Y554N; gp120: S111N, D361G, D368N; gp41: I176M, K342R; nef: I20M; p17: S54A; p2: -12N; vpu: F16A, A75-, L76-, L77-, D78-, D79-, N80-, N81-"}}, "children": [{"name": "A6_NODE_0000042", "node_attrs": {"div": 0.12352000000000002, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G1109A", "-1455A", "-1457T", "A1458-", "A1459-", "C1460-", "A1743-", "C1744-", "G2463A", "A5537C", "A5689T", "A5828T", "-6177T", "C6193T", "T6223A", "G6227-", "A6228-", "A6229-", "T6242A", "T6246A", "T6340G", "A6776G", "G6789A", "G6856T", "A6957-", "-6963G", "-6964C", "-6965A", "-6967T", "A6990G", "G7269A", "A7531G", "A8213T", "C8291T", "A8531C", "A8739G", "G8870A"], "RT-p51": ["S123N"], "RT-p66": ["S123N"], "gp120": ["S130T", "F131Y", "S162E", "K334N", "-373T", "-379S", "R472K"], "gp41": ["I304L"], "nef": ["I10L", "F85L"], "p6": ["E34G"], "p7": ["P9S"], "rev": ["T8P"], "tat": ["H54P"], "vif": ["E37K"], "vpr": ["G89V"], "vpu": ["I28L"]}, "labels": {"aa": "RT-p51: S123N; RT-p66: S123N; gp120: S130T, F131Y, S162E, K334N, -373T, -379S, R472K; gp41: I304L; nef: I10L, F85L; p6: E34G; p7: P9S; rev: T8P; tat: H54P; vif: E37K; vpr: G89V; vpu: I28L"}}, "children": [{"name": "MT369984", "node_attrs": {"div": 0.15120000000000003, "accession": "MT369984", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2016.0}, "Strain_name": {"value": "RU_ERS_1104_2016"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A265G", "-280A", "C281-", "C456T", "G480A", "A509G", "C516A", "C531T", "C680T", "G686A", "G687A", "G712A", "C713T", "A714-", "A715-", "G716-", "C765T", "G803A", "C823G", "A873G", "T965C", "T978G", "A980G", "A1073G", "A1101G", "A1176G", "G1192A", "A1263T", "T1271A", "A1292T", "G1301A", "T1322C", "A1340G", "-1456A", "G1472A", "T1478C", "C1491T", "G1508A", "T1511C", "C1556T", "T1559C", "T1646C", "A1673G", "A1720C", "-1741T", "-1746A", "-1747C", "-1748T", "A1772G", "G1777T", "A1783G", "A1784T", "A1786C", "A1832G", "A1835G", "A1839G", "A1907G", "G1968A", "G2027A", "G2032A", "A2059G", "C2075A", "G2111A", "C2203A", "G2212T", "G2273A", "G2311A", "T2323C", "T2347G", "C2353T", "C2420T", "G2428A", "A2437T", "T2449A", "T2499G", "T2567G", "A2611G", "A2641G", "T2689C", "G2761A", "A2764G", "G2869A", "G2902A", "G2914A", "G2925A", "C2944T", "A2969G", "T3045C", "A3091G", "C3095A", "A3097T", "T3197C", "A3280G", "C3359T", "T3418C", "C3444A", "G3448A", "T3472G", "C3497T", "A3629C", "G3630A", "G3643A", "A3644C", "G3664A", "A3670G", "A3808T", "T3904C", "T3946C", "C3970T", "C3977T", "A4175G", "T4412C", "A4427T", "C4428T", "T4450C", "T4543C", "G4695A", "T4701G", "T4703G", "C4820A", "T4914C", "G4959A", "T4960G", "T4969C", "G4981A", "C4992A", "G5014A", "T5018C", "G5036A", "A5049C", "G5059A", "G5086A", "A5122G", "A5176G", "C5180A", "G5226A", "C5292T", "A5336C", "G5355A", "G5357A", "A5359G", "T5382C", "T5448A", "G5482A", "A5493G", "A5576C", "A5607-", "A5608-", "T5609C", "A5611G", "C5612A", "G5635T", "A5656G", "T5704G", "A5718G", "G5725A", "A5775G", "A5781G", "A5794G", "C5795A", "A5796G", "G5806A", "C5831T", "T5836G", "G5851A", "T5852G", "G5861A", "C5887T", "C5974T", "A5995T", "A6050G", "A6182T", "G6183T", "A6192G", "G6195A", "T6199C", "G6201A", "A6204G", "G6207A", "A6209G", "-6210A", "C6211T", "-6213G", "-6214T", "-6215A", "-6216T", "-6217G", "-6218T", "-6219T", "-6221A", "C6241T", "A6324G", "G6327A", "A6329G", "A6330G", "A6335G", "T6337A", "A6338C", "C6358T", "A6465G", "G6490A", "A6500T", "A6525G", "A6584G", "G6593A", "A6611G", "A6616G", "C6673T", "C6745T", "C6758T", "A6775G", "C6777A", "C6797T", "A6799T", "T6810C", "T6824C", "A6833-", "A6834-", "T6835-", "C6850T", "T6863A", "A6926G", "C6937A", "-6956A", "-6957T", "-6958A", "G6995C", "-6999A", "A7005G", "T7009G", "T7045C", "T7095A", "G7102C", "A7107T", "G7238A", "A7240G", "A7275G", "A7290G", "G7375A", "G7513A", "A7583G", "G7628A", "A7629G", "C7651T", "A7688G", "G7712A", "G7831A", "C7894T", "T7930C", "A7972C", "G7997A", "A7998C", "A8128C", "G8143A", "A8173G", "G8180A", "G8240A", "G8241A", "G8242T", "G8255A", "T8279G", "A8338G", "-8370C", "C8425T", "T8483C", "T8504C", "G8522A", "G8534A", "T8595A", "C8597A", "T8723C", "A8756C", "G8795T", "A8797T", "A8823G", "A8829T", "C8904A", "G8905C", "G8929A", "T9028A", "G9030T", "G9095T", "-9109G"], "INT": ["E11D", "N134D", "T218L"], "RT-p51": ["E6K", "D36E", "K39N", "V60I", "I135R", "S158A", "R277K", "I292V", "V317A", "Q334N"], "RT-p66": ["E6K", "D36E", "K39N", "V60I", "I135R", "S158A", "R277K", "I292V", "V317A", "Q334N", "T450N", "P468S", "R512Q", "I517L"], "gp120": ["A3T", "N66D", "T110S", "S115N", "S116D", "-117S", "-118M", "-119L", "D157G", "N159G", "E162Q", "N204S", "T216S", "K224R", "I244V", "E247K", "S253G", "D294A", "H302Y", "T308E", "Q315Y", "I319T", "Y324H", "N327-", "-328N", "S337T", "N358D", "N368E", "-372V", "-381Q", "-382D", "-383N", "-384G", "R416S", "E418V", "N432S", "S433I", "N435S", "E462K", "K474R", "E479G"], "gp41": ["L24I", "T94A", "D109S", "N129D", "E137K", "M176I", "R221G", "K223N", "D232T", "G293S", "G313N", "V318I", "C326G"], "nef": ["T28I", "E63D", "L85I", "I133V", "E151D", "E152V", "N161D", "S163C", "R188T", "R196Q"], "p17": ["G49S", "P66S", "A118T", "S126N", "K127-"], "p24": ["H12Y", "A31G", "T48A", "L83V", "I124V", "S149G", "R154K", "T178S", "D180E", "E187D"], "p6": ["D14A", "R18G", "R33M"], "pro": ["T12A", "I13V", "K14R", "N37D", "R57K", "V77I", "L93I"], "rev": ["I21L", "K39R", "R50N", "T94P", "G99R", "I109V", "G111E"], "tat": ["N24K", "V36I", "N67T", "L74S"], "vif": ["F39V", "D78E", "Y110H", "V125R", "I128T", "R132K", "P136T", "G143E", "T155P", "R158K", "R167K", "K179R"], "vpr": ["L26I", "G41E", "T63I", "Q77H", "V84I", "Q85R", "S93P"], "vpu": ["T2E", "V10L", "A16S", "I17V", "L33V", "D40N", "T63E", "V67M", "-70L", "-71V", "-72L", "-79V", "-80D", "-81D", "V82N"]}, "labels": {"aa": "INT: E11D, N134D, T218L; RT-p51: E6K, D36E, K39N, V60I, I135R, S158A, R277K, I292V, V317A, Q334N; RT-p66: E6K, D36E, K39N, V60I, I135R, S158A, R277K, I292V, V317A, Q334N, T450N, P468S, R512Q, I517L; gp120: A3T, N66D, T110S, S115N, S116D, -117S, -118M, -119L, D157G, N159G, E162Q, N204S, T216S, K224R, I244V, E247K, S253G, D294A, H302Y, T308E, Q315Y, I319T, Y324H, N327-, -328N, S337T, N358D, N368E, -372V, -381Q, -382D, -383N, -384G, R416S, E418V, N432S, S433I, N435S, E462K, K474R, E479G; gp41: L24I, T94A, D109S, N129D, E137K, M176I, R221G, K223N, D232T, G293S, G313N, V318I, C326G; nef: T28I, E63D, L85I, I133V, E151D, E152V, N161D, S163C, R188T, R196Q; p17: G49S, P66S, A118T, S126N, K127-; p24: H12Y, A31G, T48A, L83V, I124V, S149G, R154K, T178S, D180E, E187D; p6: D14A, R18G, R33M; pro: T12A, I13V, K14R, N37D, R57K, V77I, L93I; rev: I21L, K39R, R50N, T94P, G99R, I109V, G111E; tat: N24K, V36I, N67T, L74S; vif: F39V, D78E, Y110H, V125R, I128T, R132K, P136T, G143E, T155P, R158K, R167K, K179R; vpr: L26I, G41E, T63I, Q77H, V84I, Q85R, S93P; vpu: T2E, V10L, A16S, I17V, L33V, D40N, T63E, V67M, -70L, -71V, -72L, -79V, -80D, -81D, V82N"}}}, {"name": "A6_NODE_0000043", "node_attrs": {"div": 0.1287, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A426C", "C435A", "A762G", "C763T", "G1562A", "T1724G", "A2693G", "A2828G", "T3445C", "A3655C", "A3784T", "G3859A", "G3916A", "A4084G", "G4228A", "T5043A", "G5620A", "A5621C", "G5747T", "T5807G", "T5899G", "A6024C", "C6115T", "A6169T", "C6178T", "T6181C", "-6210T", "-6213T", "G6224-", "A6230-", "T6231-", "G6232-", "A6233-", "T6295C", "A6338G", "G6575A", "A6689G", "C6780A", "A6800G", "T6875G", "T7147A", "C7328A", "G7633T", "A7971G", "G8161-", "G8172-", "C8287T", "T8374-", "T8595C", "T8740A", "T8741G", "T8843C", "G8875A", "C9023T"], "INT": ["E3D"], "RT-p51": ["T200A"], "RT-p66": ["T200A", "K520N"], "gp120": ["E125-", "M126-", "K127-", "E241K", "I255T", "T308A", "A309E", "K316E", "L341V"], "gp41": ["L9I", "I125S"], "nef": ["I133E", "R178K"], "p17": ["I31L", "L34I"], "p24": ["T11V", "M15I"], "vif": ["L153I"], "vpu": ["E5T", "R47I"]}, "labels": {"aa": "INT: E3D; RT-p51: T200A; RT-p66: T200A, K520N; gp120: E125-, M126-, K127-, E241K, I255T, T308A, A309E, K316E, L341V; gp41: L9I, I125S; nef: I133E, R178K; p17: I31L, L34I; p24: T11V, M15I; vif: L153I; vpu: E5T, R47I"}}, "children": [{"name": "MT369995", "node_attrs": {"div": 0.15473, "accession": "MT369995", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2016.0}, "Strain_name": {"value": "RU_ERS_1120_2016"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["G279A", "-280G", "A302G", "G304T", "A305-", "T396C", "A417C", "C471G", "T473C", "A509G", "G608A", "A614C", "A619G", "G690A", "G702A", "A714C", "A725G", "G776A", "G920A", "G992A", "T1001G", "A1093C", "A1196G", "G1232A", "-1456A", "A1461G", "A1485G", "G1487A", "A1529T", "C1615A", "A1691G", "-1741C", "-1746G", "-1747C", "-1748T", "C1749T", "T1752C", "A1772G", "G1777A", "A1780G", "A1783T", "C1785T", "C1792T", "T1795C", "C1853T", "T1986C", "A2059G", "T2104C", "A2140G", "C2149G", "G2273A", "G2329A", "A2368G", "T2392G", "A2395G", "G2459A", "G2518A", "A2788G", "T2829A", "T2930C", "G2932A", "A2965T", "G3019A", "A3142G", "G3307A", "T3355A", "G3409A", "G3442A", "A3449G", "T3450C", "T3499C", "C3500T", "T3505G", "A3521C", "G3630A", "C3691T", "A3739G", "G3989A", "G4063A", "T4234C", "G4276T", "A4641C", "T4674C", "G4693A", "A4696G", "A4733C", "G4735A", "A4786G", "T4805A", "G4860A", "A4878G", "C4967A", "C5006A", "A5007C", "A5039G", "T5078C", "G5185A", "C5221T", "A5277G", "C5292T", "T5382G", "A5461T", "G5463T", "C5491T", "A5493G", "A5539G", "C5556T", "T5604C", "G5605A", "T5606-", "C5615T", "T5651C", "G5652T", "C5654T", "C5658T", "T5708A", "G5717A", "A5720G", "A5734C", "A5781G", "A5840G", "G5842A", "G5851A", "A5866C", "A5867-", "A5868-", "C5869-", "A5884G", "T5890C", "C5924T", "A5962G", "A6020C", "T6046C", "C6097T", "C6170T", "C6171G", "A6174C", "C6175T", "A6176G", "A6179C", "G6183A", "A6192G", "T6196C", "C6208A", "C6211A", "-6214A", "-6215G", "-6216T", "-6217G", "-6218T", "-6219G", "-6221A", "-6224T", "A6225G", "C6241T", "C6321T", "G6327A", "A6335G", "T6337G", "G6403A", "A6464G", "T6466C", "A6489T", "C6499T", "C6548T", "G6571A", "G6583C", "A6594C", "T6618C", "C6636A", "T6637G", "G6668A", "G6669A", "A6752C", "G6774A", "G6779A", "A6788G", "A6789C", "A6818G", "T6824C", "-6830C", "-6831C", "-6832C", "T6835C", "A6836-", "A6837-", "C6838-", "G6936T", "A6996C", "G6997A", "-6999G", "C7019T", "A7111C", "G7155C", "G7162A", "A7177G", "G7238A", "A7268G", "A7290G", "G7291A", "A7339G", "A7373C", "G7441A", "A7533G", "A7590C", "T7622A", "A7676T", "T7677C", "A7705G", "G7712C", "C7932T", "A8018G", "A8029-", "G8030-", "C8031-", "C8037T", "C8092A", "-8161C", "G8171A", "-8172T", "G8180A", "C8221T", "T8223C", "C8238G", "G8240A", "G8241A", "G8242T", "A8263G", "C8276A", "T8293C", "G8329A", "G8356T", "G8365A", "C8369A", "-8370C", "-8374G", "C8382T", "G8402A", "C8425T", "C8460T", "T8498C", "C8507T", "G8522A", "G8555A", "G8558T", "A8584T", "A8647G", "C8648G", "A8770T", "G8787A", "A8798G", "G8807A", "G8816A", "A8873G", "T8887G", "G8888A", "C8934A", "T8935C", "C8951T", "G8991A", "T9018G", "T9073C", "T9097C", "C9108A", "-9109G"], "INT": ["V72I", "E167D"], "RT-p51": ["V60I", "E122K", "M245E"], "RT-p66": ["V60I", "E122K", "M245E", "I452A", "K476Q", "R512K"], "gp120": ["E4D", "N5-", "I56L", "D57A", "N107T", "N108F", "S112N", "T156I", "N204D", "K212M", "M243I", "E247A", "T261K", "G272N", "I279V", "A291T", "T292G", "R307K", "E309K", "N312A", "Y324H", "-326P", "N369S", "-372N", "-374T", "-376G", "-377T", "N378A", "S379D", "T380N", "-381E", "P389S", "N414I", "N434T", "S436E", "N437T", "E438-", "T439-", "E462K", "K472E", "E479G"], "gp41": ["K77R", "N96T", "S107T", "E137Q", "T210I", "R221G", "K223R", "S239G", "A243-", "A245V", "F263L", "G290I", "G293S", "I307T", "A312G", "G313N", "L325I"], "nef": ["W5L", "S8N", "S9R", "V11G", "P14S", "M20I", "T28I", "H40Y", "E63D", "Y81F", "Y102W", "Y143F", "D149N", "M182R", "L198T"], "p17": ["K28Q", "L46V", "E93D", "K95R", "A119T", "G123R", "K127Q"], "p2": ["I13V"], "p24": ["N121T"], "p6": ["F15L", "R18G", "I21T", "T22A", "-23S", "S25L", "L26-", "R33K", "Q35L", "R36Y", "P38L", "S39T"], "p7": ["R7G", "E21D", "T50N"], "pro": ["L63P"], "rev": ["T14I", "K39R", "E57G", "S61-", "H82N", "E105Q", "G108D", "G111E"], "tat": ["D2E", "K29Y", "R55G", "P75S"], "vif": ["Y30H", "R36K", "K37G", "R50K", "K67R", "H73Q", "E92K", "I98V", "H127Q", "N140K", "K141Q"], "vpr": ["E58G", "T63I", "S93A"], "vpu": ["V15A", "A16F", "L34Q", "R37K", "K38R", "I43L", "V67G", "V82L"]}, "labels": {"aa": "INT: V72I, E167D; RT-p51: V60I, E122K, M245E; RT-p66: V60I, E122K, M245E, I452A, K476Q, R512K; gp120: E4D, N5-, I56L, D57A, N107T, N108F, S112N, T156I, N204D, K212M, M243I, E247A, T261K, G272N, I279V, A291T, T292G, R307K, E309K, N312A, Y324H, -326P, N369S, -372N, -374T, -376G, -377T, N378A, S379D, T380N, -381E, P389S, N414I, N434T, S436E, N437T, E438-, T439-, E462K, K472E, E479G; gp41: K77R, N96T, S107T, E137Q, T210I, R221G, K223R, S239G, A243-, A245V, F263L, G290I, G293S, I307T, A312G, G313N, L325I; nef: W5L, S8N, S9R, V11G, P14S, M20I, T28I, H40Y, E63D, Y81F, Y102W, Y143F, D149N, M182R, L198T; p17: K28Q, L46V, E93D, K95R, A119T, G123R, K127Q; p2: I13V; p24: N121T; p6: F15L, R18G, I21T, T22A, -23S, S25L, L26-, R33K, Q35L, R36Y, P38L, S39T; p7: R7G, E21D, T50N; pro: L63P; rev: T14I, K39R, E57G, S61-, H82N, E105Q, G108D, G111E; tat: D2E, K29Y, R55G, P75S; vif: Y30H, R36K, K37G, R50K, K67R, H73Q, E92K, I98V, H127Q, N140K, K141Q; vpr: E58G, T63I, S93A; vpu: V15A, A16F, L34Q, R37K, K38R, I43L, V67G, V82L"}}}, {"name": "MH330355", "node_attrs": {"div": 0.1623, "accession": "MH330355", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2012.0}, "Strain_name": {"value": "BLG045"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["-216C", "-217A", "A222-", "G223-", "A224-", "A225-", "G226-", "T227-", "T228-", "C229-", "T230-", "C231-", "A388G", "A431G", "A437T", "A440C", "G480A", "T525A", "A534G", "C539T", "A562G", "T602G", "A615G", "A653G", "A654T", "C679A", "G776T", "T852A", "G866A", "T1002C", "G1019A", "A1067G", "G1078C", "G1090A", "C1103T", "C1137T", "T1271G", "C1280T", "A1329T", "T1331C", "G1404A", "T1444C", "A1449G", "A1450G", "-1456C", "A1475G", "C1491G", "C1492G", "A1493C", "A1494C", "A1495C", "G1498A", "T1501G", "T1502A", "-1503A", "-1504T", "-1505T", "A1565G", "A1661G", "A1673G", "A1720G", "T1723G", "G1731A", "A1742-", "C1749-", "C1750-", "C1751-", "T1752-", "C1753-", "C1754-", "C1755-", "T1756-", "G1757-", "A1758-", "A1759-", "A1760-", "C1761-", "A1786G", "A1835G", "G1845A", "A1857T", "T1954C", "C1979G", "A1990G", "A2007G", "G2027A", "C2075A", "T2199C", "G2212T", "T2323C", "A2404G", "T2449C", "T2479A", "T2567G", "A2592G", "A2710G", "A2887G", "T2908C", "G2925A", "G2947A", "C2978A", "A3079G", "C3100A", "C3178T", "C3223A", "A3224T", "G3236A", "C3252T", "G3264A", "A3274G", "A3280G", "T3303C", "G3382A", "G3439A", "G3442C", "A3451G", "A3487G", "T3496C", "C3497T", "T3535G", "T3566C", "T3610C", "G3631A", "G3643A", "G3766A", "A3808C", "A3834G", "G3846A", "T3850G", "C4076A", "G4078A", "C4162A", "G4243A", "G4267A", "A4333G", "T4640C", "G4695A", "T4702C", "G4708A", "C4728A", "A4786C", "C4826A", "T4914C", "A4937C", "T4991C", "A5015G", "G5086A", "G5128A", "T5147C", "T5179G", "C5237T", "A5246C", "C5248A", "A5359C", "T5412G", "G5437C", "T5467A", "G5482C", "T5579A", "T5584C", "C5612T", "A5622T", "G5627A", "G5629T", "G5652A", "T5653G", "T5684C", "T5689C", "G5700A", "C5707A", "T5708G", "G5730A", "G5783A", "C5797A", "G5805A", "G5842C", "A5846T", "G5857A", "G5861A", "A5865G", "G5917A", "A6022G", "G6023C", "A6131C", "C6170A", "C6180A", "A6182C", "T6184C", "A6194G", "G6195A", "C6202T", "A6203G", "C6205T", "C6208T", "C6211G", "G6220-", "A6222-", "A6223-", "A6225-", "A6226-", "A6234-", "A6235-", "A6236-", "A6237-", "C6256A", "G6276A", "C6282A", "T6287C", "A6288G", "T6301C", "A6324G", "T6328G", "G6333A", "A6339G", "A6456G", "A6574C", "G6612A", "T6618A", "G6638A", "C6665A", "A6679C", "A6683G", "C6684A", "A6686G", "C6692G", "C6718T", "A6728G", "G6731A", "G6734A", "C6758T", "T6787C", "C6797A", "A6803G", "A6805G", "A6809G", "T6810C", "A6822C", "A6848G", "T6856C", "A6858G", "G6881A", "G6935A", "C6937G", "A6950T", "-6956G", "-6957G", "-6958C", "G6997T", "-6999T", "A7005G", "C7014T", "G7033A", "A7088C", "A7089C", "T7095A", "G7101C", "G7102A", "G7106A", "A7107T", "A7133G", "C7134T", "A7148C", "T7150G", "G7152A", "C7156T", "A7158G", "G7160A", "G7162C", "-7166G", "-7167A", "-7168A", "-7169A", "-7170C", "-7171C", "T7180C", "G7197A", "G7199C", "G7375A", "T7403C", "C7584A", "C7597T", "A7626T", "G7631T", "A7641G", "C7666T", "T7677G", "G7700A", "C7703T", "G7717A", "T7747A", "A7763C", "T7774C", "G7790A", "A7818G", "G7962A", "G7964A", "A7972C", "G8005A", "T8008A", "A8032G", "A8069C", "G8070T", "A8076G", "A8128-", "C8129-", "G8130-", "C8131-", "A8132-", "G8133-", "G8134-", "G8135-", "G8136-", "G8137-", "T8138-", "G8139-", "G8140-", "G8141-", "A8142-", "G8143-", "G8144-", "G8145-", "C8146-", "C8147-", "T8148-", "C8149-", "A8150-", "A8151-", "G8152-", "T8153-", "A8154-", "T8155-", "C8156-", "T8157-", "G8158-", "G8159-", "G8160-", "A8162-", "A8163-", "T8164-", "C8165-", "T8166-", "T8167-", "C8168-", "T8169-", "G8170-", "G8171-", "A8173G", "G8196A", "T8213C", "A8264C", "C8276T", "G8305A", "G8349A", "G8350A", "T8366C", "A8367-", "G8368-", "C8369-", "T8371-", "A8372-", "G8373-", "G8375-", "G8376-", "G8377-", "A8378-", "T8411C", "C8413A", "T8414A", "A8455C", "A8458G", "G8459A", "T8504C", "C8531G", "G8558A", "A8617G", "A8666C", "C8699T", "G8738A", "A8744G", "T8745C", "A8750G", "A8794C", "G8795A", "A8815G", "C8855T", "A8869G", "A8873C", "A8917G", "C8960A", "G8970C", "C8971T", "G8977A", "A8978C", "C8979A", "T9012C", "T9014G", "G9016C", "T9017A", "T9018C", "-9109T"], "INT": ["E11D", "K20R", "S24N", "D25E", "L101I"], "RT-p51": ["I35T", "K39N", "S158A", "K166R", "M245V", "R277K", "L295M", "D335E", "T377S", "V381I", "T386I", "R390K", "I393M", "M403T"], "RT-p66": ["I35T", "K39N", "S158A", "K166R", "M245V", "R277K", "L295M", "D335E", "T377S", "V381I", "T386I", "R390K", "I393M", "M403T", "E449D", "I452M", "P468S", "H480Q", "S491P"], "gp120": ["A3T", "E4G", "I56M", "D57P", "K93Q", "N107I", "N111I", "S112T", "-117D", "-118S", "-119M", "-120I", "N128-", "R141K", "T143N", "Y145R", "D157G", "K201R", "K240N", "S253N", "T255N", "E262K", "P271T", "T277E", "S278G", "I279-", "R280-", "I281-", "G284-", "P285-", "G286-", "Q287-", "T288-", "F289-", "Y290V", "A291G", "T292I", "D294P", "H302Y", "Q315K", "I317V", "I319A", "K323T", "-328N", "I332V", "N335S", "V343I", "G361R", "T366S", "N368G", "-372V", "-381D", "-382V", "-383N", "-384G", "T387I", "K412P", "R416T", "E418I", "T427V", "N434S", "S436T", "N437S", "R448K", "D449H"], "gp41": ["L24I", "T94N", "Q108L", "E110Y", "D113G", "D133N", "D148E", "K154Q", "D163N", "K172R", "G220E", "K223S", "S256L", "H258R", "R276-", "S277-", "G278-", "W279-", "E280-", "G281-", "L282-", "K283-", "Y284-", "L285-", "G286-", "N287-", "L288-", "L289-", "G290-", "S298N", "I321L", "L325F"], "nef": ["G3N", "S9-", "L10-", "V11-", "G12-", "P24E", "D38A", "K39R", "K92R", "E108D", "F135L", "E151A", "E158G", "E176G", "E177D", "K192R", "C206*"], "p17": ["K18R", "G49S", "L64I", "T67A", "K76R", "H89Q", "I94V", "I107L", "T115N"], "p2": ["V7A", "N9G", "N12T"], "p24": ["S41T", "F91L", "M96I", "G116A", "S120N", "D180E", "T200S", "G225S"], "p6": ["D14G", "F15W", "I21K", "T22E", "-23Q", "P24K", "S25D", "L26R", "K27E", "E29R", "Q30P", "K31-", "D32-", "R33-", "G34-", "Q35-", "R36-", "P38S", "S39I"], "p7": ["S9G", "K10P", "R11K", "I12R", "-13I"], "pro": ["I13V", "G16E", "K20I", "Q61E", "I64M", "K70R", "V77I", "L93I"], "rev": ["L22I", "D53N", "S54T", "T62A", "Q74P", "T94-", "Q95-", "G96-", "V97-", "G98-", "G99-", "P100-", "Q101-", "V102-", "S103-", "G104-", "E105-", "S106-", "S107-", "G108-", "I109V"], "tat": ["N12K", "A21P", "C31S", "V36L", "L68H", "S70P", "E85K"], "vif": ["F39S", "R41K", "H48N", "K67T", "H80Q", "Y110H", "E117D", "R167K", "R181K"], "vpr": ["Y15H", "D25E", "H45Y", "N48Q", "Q85P"], "vpu": ["T2I", "C7Y", "A8S", "V26A", "L34R", "E60D", "L61E", "S62E", "T63E", "M65S", "E66T", "V67I", "G68M", "N69-", "-70E", "-71G", "-72G", "-73N", "-74L", "-75A", "-76L", "-77L", "-78D", "-79H", "-80I", "-81N"]}, "labels": {"aa": "INT: E11D, K20R, S24N, D25E, L101I; RT-p51: I35T, K39N, S158A, K166R, M245V, R277K, L295M, D335E, T377S, V381I, T386I, R390K, I393M, M403T; RT-p66: I35T, K39N, S158A, K166R, M245V, R277K, L295M, D335E, T377S, V381I, T386I, R390K, I393M, M403T, E449D, I452M, P468S, H480Q, S491P; gp120: A3T, E4G, I56M, D57P, K93Q, N107I, N111I, S112T, -117D, -118S, -119M, -120I, N128-, R141K, T143N, Y145R, D157G, K201R, K240N, S253N, T255N, E262K, P271T, T277E, S278G, I279-, R280-, I281-, G284-, P285-, G286-, Q287-, T288-, F289-, Y290V, A291G, T292I, D294P, H302Y, Q315K, I317V, I319A, K323T, -328N, I332V, N335S, V343I, G361R, T366S, N368G, -372V, -381D, -382V, -383N, -384G, T387I, K412P, R416T, E418I, T427V, N434S, S436T, N437S, R448K, D449H; gp41: L24I, T94N, Q108L, E110Y, D113G, D133N, D148E, K154Q, D163N, K172R, G220E, K223S, S256L, H258R, R276-, S277-, G278-, W279-, E280-, G281-, L282-, K283-, Y284-, L285-, G286-, N287-, L288-, L289-, G290-, S298N, I321L, L325F; nef: G3N, S9-, L10-, V11-, G12-, P24E, D38A, K39R, K92R, E108D, F135L, E151A, E158G, E176G, E177D, K192R, C206*; p17: K18R, G49S, L64I, T67A, K76R, H89Q, I94V, I107L, T115N; p2: V7A, N9G, N12T; p24: S41T, F91L, M96I, G116A, S120N, D180E, T200S, G225S; p6: D14G, F15W, I21K, T22E, -23Q, P24K, S25D, L26R, K27E, E29R, Q30P, K31-, D32-, R33-, G34-, Q35-, R36-, P38S, S39I; p7: S9G, K10P, R11K, I12R, -13I; pro: I13V, G16E, K20I, Q61E, I64M, K70R, V77I, L93I; rev: L22I, D53N, S54T, T62A, Q74P, T94-, Q95-, G96-, V97-, G98-, G99-, P100-, Q101-, V102-, S103-, G104-, E105-, S106-, S107-, G108-, I109V; tat: N12K, A21P, C31S, V36L, L68H, S70P, E85K; vif: F39S, R41K, H48N, K67T, H80Q, Y110H, E117D, R167K, R181K; vpr: Y15H, D25E, H45Y, N48Q, Q85P; vpu: T2I, C7Y, A8S, V26A, L34R, E60D, L61E, S62E, T63E, M65S, E66T, V67I, G68M, N69-, -70E, -71G, -72G, -73N, -74L, -75A, -76L, -77L, -78D, -79H, -80I, -81N"}}}]}]}, {"name": "A6_NODE_0000044", "node_attrs": {"div": 0.12171000000000003, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T978G", "G2456C", "T5653G", "C6180-", "-6221T", "C6966-", "A7590C", "G7640A"], "RT-p51": ["D121H", "M245V"], "RT-p66": ["D121H", "M245V"], "gp120": ["S370-", "N414I"], "gp41": ["N96T", "D113N", "C330R"], "vpu": ["N69V", "V82-"]}, "labels": {"aa": "RT-p51: D121H, M245V; RT-p66: D121H, M245V; gp120: S370-, N414I; gp41: N96T, D113N, C330R; vpu: N69V, V82-"}}, "children": [{"name": "A6_NODE_0000045", "node_attrs": {"div": 0.12673000000000004, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "G866A", "G1019A", "G1077A", "G1078C", "G1090A", "C1103T", "G1487A", "G1731A", "C3055T", "A3193G", "A3400G", "T3962G", "G4243A", "A4696G", "G4735A", "G4860A", "C5050A", "C5292T", "T5356G", "C5478T", "C5599A", "G5627A", "A5656G", "G5783A", "C5827T", "C6175-", "A6176-", "C6178-", "A6179-", "-6214T", "-6219T", "A6329G", "G6336A", "A6339G", "G6668A", "C6684A", "A6791G", "-6831A", "T6835C", "-6956A", "-6958T", "T6961C", "-6963C", "-6964T", "-6999G", "A7241G", "C7328A", "A7531G", "G7712A", "G7790A", "A7942G", "G7964A", "A7971G", "T8008G", "C8097T", "-8370A", "G8404A", "G8805A"], "INT": ["L63V"], "gp120": ["N113S", "-122E", "S160T", "T277K", "T313A", "-383N", "N435S", "I463V"], "gp41": ["L9I", "K223R", "S265L"], "nef": ["R21K"], "p17": ["K18R"], "p24": ["L83V", "M96I", "G116T", "S120N"], "rev": ["R32G", "S54A"], "tat": ["Q78R"], "vif": ["E37G", "R50K", "T155K"], "vpr": ["T63I", "V84G"], "vpu": ["C7Y", "I17V"]}, "labels": {"aa": "INT: L63V; gp120: N113S, -122E, S160T, T277K, T313A, -383N, N435S, I463V; gp41: L9I, K223R, S265L; nef: R21K; p17: K18R; p24: L83V, M96I, G116T, S120N; rev: R32G, S54A; tat: Q78R; vif: E37G, R50K, T155K; vpr: T63I, V84G; vpu: C7Y, I17V"}}, "children": [{"name": "MH330373", "node_attrs": {"div": 0.14996000000000004, "accession": "MH330373", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2013.0}, "Strain_name": {"value": "MRK063"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["T154G", "C155T", "G158-", "G159-", "C160-", "G161-", "G162-", "T163-", "G164-", "T165-", "A166-", "A168-", "A169-", "A170-", "A171-", "T172-", "C173-", "T174-", "C175-", "T176-", "A177-", "G178-", "C179-", "A180-", "G181-", "T182-", "G183-", "G184-", "C185-", "G186-", "C187-", "C188-", "C189-", "G190-", "A191-", "A426C", "C456T", "T473A", "G480A", "T602G", "A615G", "A619C", "A692G", "A715C", "C767T", "T771G", "C897T", "C1008G", "C1065G", "A1066C", "C1115A", "C1385T", "G1404A", "A1459C", "A1461G", "T1502A", "-1503A", "-1504T", "-1505T", "A1525G", "G1562A", "G1589A", "A1659-", "A1660-", "A1661-", "-1741T", "A1742G", "-1745C", "A1780G", "A1819G", "A1835G", "C1903T", "C1960T", "C1979G", "G1981C", "C1985G", "T1986G", "G2027A", "C2075A", "T2199C", "G2212T", "T2280C", "T2323C", "T2449C", "G2548A", "T2567G", "C2831T", "C2845T", "A2977T", "T3068C", "G3211A", "A3217G", "A3265G", "G3344A", "G3382A", "G3385A", "G3467A", "G3553A", "A3655C", "C3712T", "G3718A", "T3793C", "T3943C", "T3976C", "G4112A", "A4175G", "C4428T", "G4697A", "C4761T", "G4782A", "A4806G", "A4861G", "A4878G", "C4967A", "A4968G", "C4992T", "T5018C", "A5176G", "T5179G", "C5221A", "C5248T", "A5336C", "T5371G", "C5556G", "T5579C", "T5600-", "A5602C", "T5604-", "G5605-", "T5606-", "G5629T", "G5729A", "-5812G", "A5824-", "G5902T", "A6015G", "A6020T", "A6024T", "T6046A", "T6064C", "C6097A", "C6116T", "T6166A", "A6169C", "A6174C", "T6184C", "A6185T", "A6186C", "C6187T", "A6200T", "G6201T", "C6202G", "A6203T", "A6204C", "C6205T", "G6207A", "-6210A", "-6213G", "-6215A", "-6216C", "-6217T", "-6218T", "A6222C", "C6241T", "T6242A", "C6243G", "A6274G", "G6323A", "G6333T", "A6368G", "T6445A", "G6457T", "A6465T", "T6466A", "A6489C", "T6618A", "C6692A", "A6716G", "A6723T", "G6732C", "T6738C", "A6752G", "A6753C", "C6758T", "G6771A", "A6776G", "A6785G", "T6787G", "G6802C", "T6804C", "-6830A", "-6832G", "A6840C", "C6843T", "A6847C", "T6849A", "C6859A", "T6863A", "A6931T", "C6984T", "A6990T", "A7044G", "T7045A", "C7087T", "A7088G", "A7094G", "C7127A", "G7155C", "T7182C", "C7217T", "G7269C", "A7589G", "C7666T", "A7691G", "T7692A", "G7700A", "T7702G", "A7713T", "G7769A", "A7772G", "A7781G", "A7791C", "C7932T", "G7962A", "G7980A", "G7992A", "G8005C", "A8006G", "A8011C", "C8038T", "C8062T", "G8133C", "A8213C", "T8265C", "G8268C", "C8287T", "G8328A", "A8399G", "G8407A", "T8451C", "G8459A", "C8460T", "A8576G", "A8584T", "T8585C", "C8607T", "A8608T", "C8640T", "C8699A", "A8739G", "T8740A", "T8741G", "A8770T", "C8840T", "T8864G", "G8870A", "C8904A", "T8912G", "T8914G", "A8917C", "A9099G", "C9108A", "G9118-", "A9119-", "G9120-", "C9121-", "T9122-", "C9123-", "T9124-", "C9125-", "T9126-", "G9127-", "G9128-", "C9129-", "T9130-", "A9131-", "G9132-", "C9133-", "T9134-", "A9135-", "G9136-", "G9137-", "G9138-", "A9139-", "A9140-", "C9141-", "C9142-", "C9143-", "A9144-", "C9145-", "T9146-", "G9147-", "C9148-", "T9149-", "T9150-", "A9151-", "A9163T", "G9164A", "C9165T"], "INT": ["V113I", "N134D", "T218I"], "RT-p51": ["I35T", "K39N", "V62A", "S158A", "V417I"], "RT-p66": ["I35T", "K39N", "V62A", "S158A", "V417I", "V458I", "K520N"], "gp120": ["Q54R", "I56L", "D57V", "N64K", "N107T", "N108S", "T110N", "S114L", "S116N", "-117N", "-119T", "-121S", "T156-", "D157-", "N158-", "N159-", "G161N", "T172A", "K201N", "N204I", "K212T", "I255N", "G272S", "R280S", "T288A", "Y290F", "A291T", "T292N", "G293A", "I295T", "K300A", "H302Y", "S306N", "T308A", "N311E", "N312S", "K316N", "I317T", "-328N", "K329T", "T330I", "N335K", "S337T", "-370T", "T371V", "-372I", "-379I", "-382G", "N397R", "K412E", "I414V", "L425I", "S433-", "S436T", "I443T", "R472T"], "gp41": ["T96A", "I130E", "D133K", "E137I", "A156T", "S157G", "N160D", "D163T", "T210I", "G220E", "G226D", "G230D", "I235V", "S277T", "I304L", "I321T", "G322A", "R342K"], "nef": ["R22Q", "H40Y", "Y81F", "H89F", "I133E", "Y143F", "E155K", "D174E", "R188S", "L191R", "K192T"], "p1": ["K10-"], "p17": ["I31L", "G49S", "H89Q", "I94V", "K95T", "K127T"], "p2": ["N12T", "I13V"], "p24": ["S14A", "P93A", "Q112A", "D128E", "G225S"], "p6": ["I21M", "E34G", "N47S"], "p7": ["P9G", "K10P", "R11K", "-13I", "K20R"], "pro": ["I13V", "Q61D", "L63G", "V77I", "L93I"], "rev": ["T14R", "D53R", "I55L", "Q95H"], "tat": ["H60Q", "L68P", "P75S", "E85K"], "vif": ["V66I", "E92R", "I98V", "H127Q", "I128V", "P136S"], "vpr": ["D25E", "Q77H"], "vpu": ["A8S", "R41K", "V69-", "-78D", "-79Y", "-81L", "-82L"]}, "labels": {"aa": "INT: V113I, N134D, T218I; RT-p51: I35T, K39N, V62A, S158A, V417I; RT-p66: I35T, K39N, V62A, S158A, V417I, V458I, K520N; gp120: Q54R, I56L, D57V, N64K, N107T, N108S, T110N, S114L, S116N, -117N, -119T, -121S, T156-, D157-, N158-, N159-, G161N, T172A, K201N, N204I, K212T, I255N, G272S, R280S, T288A, Y290F, A291T, T292N, G293A, I295T, K300A, H302Y, S306N, T308A, N311E, N312S, K316N, I317T, -328N, K329T, T330I, N335K, S337T, -370T, T371V, -372I, -379I, -382G, N397R, K412E, I414V, L425I, S433-, S436T, I443T, R472T; gp41: T96A, I130E, D133K, E137I, A156T, S157G, N160D, D163T, T210I, G220E, G226D, G230D, I235V, S277T, I304L, I321T, G322A, R342K; nef: R22Q, H40Y, Y81F, H89F, I133E, Y143F, E155K, D174E, R188S, L191R, K192T; p1: K10-; p17: I31L, G49S, H89Q, I94V, K95T, K127T; p2: N12T, I13V; p24: S14A, P93A, Q112A, D128E, G225S; p6: I21M, E34G, N47S; p7: P9G, K10P, R11K, -13I, K20R; pro: I13V, Q61D, L63G, V77I, L93I; rev: T14R, D53R, I55L, Q95H; tat: H60Q, L68P, P75S, E85K; vif: V66I, E92R, I98V, H127Q, I128V, P136S; vpr: D25E, Q77H; vpu: A8S, R41K, V69-, -78D, -79Y, -81L, -82L"}}}, {"name": "MT369994", "node_attrs": {"div": 0.15707000000000004, "accession": "MT369994", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2016.0}, "Strain_name": {"value": "RU_ERS_1116_2016"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A278G", "G279C", "-280G", "G317A", "G361C", "G470A", "T473C", "A509G", "C516A", "G518A", "T525C", "A527C", "C531T", "A614G", "A692T", "G696A", "G717A", "G776A", "G860A", "G938A", "C950T", "A1202C", "C1214T", "C1350T", "G1418A", "T1646C", "A1697G", "G1719A", "G1739-", "A1740-", "C1744T", "-1745A", "-1746A", "-1747C", "-1748C", "C1826A", "G1845C", "A1907G", "A1963G", "A2012G", "T2062C", "T2104C", "A2179G", "G2215A", "G2273A", "G2329A", "T2392G", "A2419G", "G2431A", "A2462G", "G2463A", "C2464A", "C2467T", "T2479C", "C2485T", "A2539G", "A2560G", "A2686G", "G2704A", "A2710G", "A2752G", "C2806T", "A2828G", "T2839C", "G2902A", "G2926A", "G2932A", "G2984A", "G3004A", "C3006A", "A3007G", "A3070G", "A3091G", "A3099G", "T3132G", "A3145G", "A3164C", "C3222T", "A3229G", "T3303C", "G3304A", "G3307A", "C3376T", "G3448A", "G3473A", "T3505A", "A3532G", "T3566C", "C3589T", "T3638A", "C3649T", "A3679G", "G3684A", "A3794C", "A3808C", "C3826T", "A3866G", "T3895C", "T3904C", "C3940T", "A3961G", "C3970T", "A3985G", "C4021A", "T4075C", "C4132A", "A4183G", "A4372G", "T4585C", "A4688G", "G4764A", "T4769A", "G4774T", "A4786G", "T4799G", "T4805G", "A4817G", "C4833A", "A4862C", "A4956T", "G4959T", "C4976T", "G4995A", "A5004G", "C5006A", "A5007C", "T5043A", "C5056A", "T5072C", "T5162C", "T5179C", "G5212A", "G5215A", "C5221T", "C5237T", "A5290G", "C5306T", "A5335G", "T5339A", "A5432G", "C5445T", "A5462G", "T5490C", "C5491T", "A5537C", "G5558A", "A5563C", "A5581G", "A5599G", "A5619G", "T5670A", "A5677G", "G5700A", "A5702G", "A5720G", "T5731C", "C5795A", "C5797A", "T5826C", "C5831T", "G5861A", "A5866G", "G5917A", "A5962G", "A5965G", "C5974T", "A6009G", "A6022G", "G6037A", "A6043G", "C6109T", "G6133A", "C6170T", "C6171A", "T6181-", "A6182-", "G6183-", "A6189G", "A6192G", "T6196G", "T6199C", "-6210G", "A6212G", "-6213A", "-6215G", "-6216G", "-6217G", "-6218G", "A6254T", "G6276A", "C6282A", "T6307G", "C6321T", "T6322A", "T6331G", "G6547A", "G6669A", "T6735A", "G6774A", "C6780A", "G6789A", "C6797A", "A6798G", "G6802A", "G6819A", "A6820C", "A6823G", "-6830C", "-6832A", "A6836-", "A6837-", "C6838-", "C6850A", "A6855G", "G6856C", "G6936C", "A6989G", "G6995A", "A7005G", "C7008G", "A7089G", "A7129G", "T7159G", "C7201A", "A7307G", "T7309A", "G7375A", "G7501A", "G7508C", "T7537C", "G7540A", "G7633C", "A7676T", "A7706C", "T7708G", "A7782G", "T7796A", "G7831A", "T7879C", "T7929C", "C7935A", "A7936C", "A7974G", "A8006C", "G8019T", "C8037T", "A8099G", "T8113A", "G8152A", "T8153C", "T8167C", "C8221T", "C8232T", "T8256C", "A8273G", "C8276A", "C8291A", "C8320T", "G8329A", "C8351T", "G8388A", "A8458G", "T8480A", "T8483C", "T8492C", "C8507T", "T8546C", "G8570A", "T8595C", "C8699T", "T8723C", "G8732A", "A8756C", "G8762A", "A8783C", "A8804G", "A8806C", "C8855T", "T8867C", "A8873G", "G8905A", "G8982A", "C8990T", "G8994-", "C9023T", "T9029C", "T9073C", "C9078T", "A9082G", "-9109G"], "INT": ["K7Q", "E11D", "I31V"], "RT-p51": ["V60I", "S123E", "E297K", "A304E", "D335G", "F346C", "K357Q", "A376V", "M403T"], "RT-p66": ["V60I", "S123E", "E297K", "A304E", "D335G", "F346C", "K357Q", "A376V", "M403T", "D460N", "S491P", "S515T", "R530K"], "gp120": ["A3T", "N52S", "I56M", "P106Y", "T110S", "N111R", "-117D", "-118G", "-119V", "-120Y", "-121E", "-123M", "E125-", "M126-", "T134S", "R141K", "T143N", "T156I", "N159S", "S162Q", "G272N", "R307K", "A309E", "R322N", "-326Q", "K334S", "G361A", "N368-", "N369-", "T371-", "-381V", "-382T", "-384D", "K412R", "N432D", "S433N", "D449E"], "gp41": ["I2V", "L24I", "V69L", "E110D", "I125F", "I135L", "E137K", "N160S", "D163N", "S165T", "M176I", "L209P", "P211H", "E224G", "I235L", "A245V", "I266V", "Y284H", "A310V", "V318A", "R324G", "L325I", "R330S"], "nef": ["V16I", "K39R", "S46R", "F85L", "E155T", "R188H"], "p17": ["S9T", "L61I", "P66S", "G121S", "V128I"], "p24": ["M15I", "P207S"], "p6": ["D14N", "P38S", "S39I"], "pro": ["L10I", "G16A", "N37D", "I72V"], "rev": ["T8P", "A15T", "T30P", "D53A", "E57D", "D84G", "C89S", "V102T", "S107P"], "tat": ["K19R", "K29R", "H54P", "S61N", "K63Q", "I69V", "H76T"], "vif": ["G60R", "D61E", "R63M", "K67R", "H73Q", "H83N", "E92N", "I124L", "V125L", "A137T", "N140E", "K141Q", "L153I", "T157K"], "vpr": ["H45Y", "Q77R", "H78Q", "G89V"], "vpu": ["T24A", "K32R", "K38R", "T63K", "L64I"]}, "labels": {"aa": "INT: K7Q, E11D, I31V; RT-p51: V60I, S123E, E297K, A304E, D335G, F346C, K357Q, A376V, M403T; RT-p66: V60I, S123E, E297K, A304E, D335G, F346C, K357Q, A376V, M403T, D460N, S491P, S515T, R530K; gp120: A3T, N52S, I56M, P106Y, T110S, N111R, -117D, -118G, -119V, -120Y, -121E, -123M, E125-, M126-, T134S, R141K, T143N, T156I, N159S, S162Q, G272N, R307K, A309E, R322N, -326Q, K334S, G361A, N368-, N369-, T371-, -381V, -382T, -384D, K412R, N432D, S433N, D449E; gp41: I2V, L24I, V69L, E110D, I125F, I135L, E137K, N160S, D163N, S165T, M176I, L209P, P211H, E224G, I235L, A245V, I266V, Y284H, A310V, V318A, R324G, L325I, R330S; nef: V16I, K39R, S46R, F85L, E155T, R188H; p17: S9T, L61I, P66S, G121S, V128I; p24: M15I, P207S; p6: D14N, P38S, S39I; pro: L10I, G16A, N37D, I72V; rev: T8P, A15T, T30P, D53A, E57D, D84G, C89S, V102T, S107P; tat: K19R, K29R, H54P, S61N, K63Q, I69V, H76T; vif: G60R, D61E, R63M, K67R, H73Q, H83N, E92N, I124L, V125L, A137T, N140E, K141Q, L153I, T157K; vpr: H45Y, Q77R, H78Q, G89V; vpu: T24A, K32R, K38R, T63K, L64I"}}}]}, {"name": "A6_NODE_0000046", "node_attrs": {"div": 0.12328000000000003, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A614C", "G5355-", "C6187T", "T6196C", "C6208T", "A6212-", "A6932T", "C6949T", "C6991A", "G7155A", "A7373T", "C7625T", "G7627T", "C7755A", "G8329A", "T8371-", "A8834G"], "gp120": ["T360S", "-373N"], "gp41": ["Q108Y", "I130L", "A151E"], "p17": ["E93D"], "p24": ["A86T"]}, "labels": {"aa": "gp120: T360S, -373N; gp41: Q108Y, I130L, A151E; p17: E93D; p24: A86T"}}, "children": [{"name": "A6_NODE_0000047", "node_attrs": {"div": 0.13733000000000004, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A302G", "T396C", "G495T", "A534G", "A693-", "C694-", "T695-", "G696-", "G697-", "C698-", "A699-", "C700-", "A701-", "G702-", "G703-", "A704-", "G860A", "G938A", "G987A", "C1009A", "C1115A", "A1158C", "T1247C", "A1292T", "C1403T", "G1418A", "C1571T", "A1673G", "G1725-", "G1726-", "G1727-", "A1728-", "T1729-", "G1730-", "G1731-", "G1732-", "G1733-", "G1734-", "A1735-", "A1736-", "G1737-", "A1738-", "G1739-", "A1740-", "A1742-", "A1743-", "C1744-", "C1749-", "C1750-", "C1751-", "T1752G", "C1785A", "A1857G", "A1907G", "A2020G", "A2191T", "G2431A", "T2453C", "T2620C", "A2734G", "T2829C", "G2830A", "C2831T", "C2857T", "T3049C", "G3071A", "C3100T", "A3292G", "T3303C", "G3316A", "C3415T", "A3484G", "C3497T", "A3503T", "G3523A", "A3655C", "T3962C", "G3989A", "A4003C", "G4112A", "C4180T", "A4650C", "T4652C", "G4697A", "T4701G", "T4703C", "G4708T", "A4952G", "C4967A", "G5215A", "C5221T", "T5356-", "G5357-", "T5371G", "T5412G", "G5444A", "T5448C", "G5463A", "A5537C", "A5611T", "T5807G", "A5840T", "G5842A", "A6169G", "-6180A", "T6184C", "A6186C", "A6192G", "-6210T", "C6211G", "T6246A", "A6280G", "G6403A", "G6425A", "C6461A", "A6471C", "A6475G", "C6477A", "C6499T", "A6616G", "A6635T", "G6638A", "C6652T", "A6689G", "A6691G", "T6733G", "G6734A", "C6780A", "T6824C", "A6848C", "C6850T", "A6855G", "C6885A", "G6905A", "A6950G", "C6951A", "A6990C", "A6994T", "G6997-", "C7000-", "G7004-", "A7005-", "A7010-", "T7095G", "T7144G", "-7166G", "-7167A", "-7169A", "-7170C", "-7171C", "G7199A", "G7256A", "A7691C", "G7700A", "G7769A", "A7818G", "A7852G", "T7929C", "C7932T", "G7947A", "G7964A", "A7970G", "G8017A", "C8206T", "T8293C", "G8328T", "C8342T", "G8388A", "C8494A", "T8498C", "A8582T", "A8744G", "C8934A", "G8970A"], "INT": ["V72I", "V113I"], "RT-p51": ["K32N", "V245T", "V326I", "M403T"], "RT-p66": ["K32N", "V245T", "V326I", "M403T", "P468S", "T470S", "K520N"], "gp120": ["-118R", "-123Y", "-124E", "F131Y", "A191T", "P203T", "N206T", "T208K", "T261S", "E262K", "I279V", "A309E", "Y324H", "I332L", "K334R", "G351R", "T366D", "-376N", "I414S", "D449N", "V468I"], "gp41": ["D133N", "A156T", "K172R", "L209P", "T210I", "G215E", "K223E", "R342I"], "nef": ["I10-", "V16I", "T51N", "L198M"], "p17": ["A54S", "T67A", "T120S", "G121-", "T122-", "G123-", "S124-"], "p24": ["P93Q", "D128E", "E187D"], "p6": ["G16A", "M17L", "E19-", "E20-", "I21-", "T22-", "P24-", "S25-", "L26-", "P38S", "S39I"], "pro": ["K20R", "N37D"], "rev": ["T8P", "Q41R"], "tat": ["N12K", "S23N", "H54P", "P75S", "D80N"], "vif": ["N22H", "F39V", "R41I", "H127Q"], "vpr": ["Q85R"], "vpu": ["T2S", "V67G"]}, "labels": {"aa": "INT: V72I, V113I; RT-p51: K32N, V245T, V326I, M403T; RT-p66: K32N, V245T, V326I, M403T, P468S, T470S, K520N; gp120: -118R, -123Y, -124E, F131Y, A191T, P203T, N206T, T208K, T261S, E262K, I279V, A309E, Y324H, I332L, K334R, G351R, T366D, -376N, I414S, D449N, V468I; gp41: D133N, A156T, K172R, L209P, T210I, G215E, K223E, R342I; nef: I10-, V16I, T51N, L198M; p17: A54S, T67A, T120S, G121-, T122-, G123-, S124-; p24: P93Q, D128E, E187D; p6: G16A, M17L, E19-, E20-, I21-, T22-, P24-, S25-, L26-, P38S, S39I; pro: K20R, N37D; rev: T8P, Q41R; tat: N12K, S23N, H54P, P75S, D80N; vif: N22H, F39V, R41I, H127Q; vpr: Q85R; vpu: T2S, V67G"}}, "children": [{"name": "MZ427727", "node_attrs": {"div": 0.15689000000000003, "accession": "MZ427727", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2014.0}, "Strain_name": {"value": "RU_ERS_726_2014"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A255G", "T288C", "T301A", "G304A", "A305T", "G480A", "A563G", "C679A", "A725G", "A762T", "A818G", "A854G", "G978A", "T979C", "A1146C", "T1271A", "C1330A", "A1415C", "A1448C", "G1452A", "A1475G", "G1487A", "C1550T", "G1642A", "T1646C", "A1661G", "C1754T", "A1759G", "A1839G", "A1846G", "C2075A", "G2311A", "T2315C", "A2374G", "T2392G", "A2615G", "A2627T", "T2672C", "A2677G", "G2705A", "G3010A", "A3099G", "T3355G", "C3368T", "G3382A", "A3387C", "A3449T", "G3694A", "A3703G", "G3787A", "C4021T", "A4033G", "C4132A", "T4135C", "A4150T", "A4300T", "T4405C", "C4428T", "A4688G", "T4706C", "A4707C", "C4728A", "A4753G", "G4779A", "T4799C", "A4806G", "C4807T", "T4940C", "C4976A", "G4995T", "T5102C", "T5182C", "C5213T", "A5246G", "T5314A", "G5375A", "A5411G", "A5444C", "A5493C", "A5548C", "C5551T", "C5556A", "G5561A", "A5602C", "G5647A", "T5655C", "G5783A", "G5784A", "G5864C", "A5867C", "A5962G", "T5986C", "G6023A", "T6025C", "A6044G", "A6066G", "A6132T", "T6148C", "A6164G", "-6177A", "G6195A", "T6199A", "G6201A", "C6205T", "A6209T", "G6220-", "A6251G", "A6279G", "T6287C", "A6319C", "G6333A", "G6336A", "A6339G", "C6482G", "C6483A", "G6668A", "A6715G", "C6772T", "G6774A", "A6791G", "A6800C", "T6810A", "A6820G", "A6821C", "-6830G", "-6831G", "-6832G", "T6835C", "A6836-", "A6837-", "C6838-", "A6857C", "A6885G", "A6886T", "G6935A", "C6937T", "-6956A", "-6958T", "A6959G", "T6961C", "-6963C", "-6964T", "-6997T", "-6999A", "-7000A", "-7004A", "-7005T", "-7010C", "A7151G", "G7160A", "G7162T", "C7164A", "C7165T", "-7168A", "G7238C", "G7269A", "A7471G", "A7533G", "T7630G", "A7632C", "A7640G", "C7645T", "G7673A", "T7697C", "A7782G", "T7813C", "A7886C", "C7912A", "C7937A", "G7979A", "G7997A", "A7998C", "T8016C", "A8017C", "G8055A", "C8078A", "G8134C", "T8265G", "C8276T", "G8348A", "C8351T", "-8370C", "-8371C", "C8383A", "A8386G", "G8459A", "T8740C", "G8822A", "C8855T", "G8870T", "A8886C", "T8887A", "G8923T", "T8935A", "A8970C", "C8971T", "-9109G"], "INT": ["T218I"], "RT-p51": ["K174E", "I178L", "E204K", "D335G", "K431T"], "RT-p66": ["K174E", "I178L", "E204K", "D335G", "K431T", "I452L"], "gp120": ["E4Q", "N5H", "D57N", "N64D", "N71S", "K93M", "T104A", "S109-", "T110-", "N111-", "S112-", "-117N", "-119N", "-120N", "-121S", "-122L", "M133V", "K142R", "Y145H", "N158S", "S160N", "G161N", "P210E", "G272S", "R307K", "N312S", "T313A", "K316Q", "I319K", "K323Q", "-326G", "N335H", "T344S", "G361S", "N369D", "-370T", "T371V", "-372T", "-374T", "-375T", "-377D", "N378E", "-379N", "T380I", "I386L", "S433G", "E462Q", "R472K"], "gp41": ["K77R", "D109E", "E110A", "N113D", "V124I", "Y132H", "N160S", "N195H", "H212N", "G226S", "D232T", "V238A", "S251N", "S277L", "I321R", "L325F"], "nef": ["-10P", "P14H", "Q15R", "I133T", "E176D", "M182Q", "R194I", "M198K"], "p1": ["R4K"], "p17": ["G49S", "T115N"], "p2": ["Q8H", "-10T", "A11N", "N12-"], "p24": ["T11S", "L83T", "N139H", "D180E", "T200N"], "p6": ["K27-", "R36N"], "pro": ["K14R", "L93I"], "rev": ["E11D", "T14K", "V16I", "T30K", "R44K", "R50N", "E57Q", "P77Q", "G96Q"], "tat": ["K12R", "N23T", "T58P", "P59S", "H60Q", "S62N", "H76Q"], "vif": ["I41L", "H48N", "H56R", "V65I", "T74V", "S130R", "A137S"], "vpr": ["P37S", "N48D", "V84Q", "R86-"], "vpu": ["V14I", "V69N", "-74H", "-75A", "-76L", "-77L", "-78V", "-79N", "-80N", "-81N", "-82V"]}, "labels": {"aa": "INT: T218I; RT-p51: K174E, I178L, E204K, D335G, K431T; RT-p66: K174E, I178L, E204K, D335G, K431T, I452L; gp120: E4Q, N5H, D57N, N64D, N71S, K93M, T104A, S109-, T110-, N111-, S112-, -117N, -119N, -120N, -121S, -122L, M133V, K142R, Y145H, N158S, S160N, G161N, P210E, G272S, R307K, N312S, T313A, K316Q, I319K, K323Q, -326G, N335H, T344S, G361S, N369D, -370T, T371V, -372T, -374T, -375T, -377D, N378E, -379N, T380I, I386L, S433G, E462Q, R472K; gp41: K77R, D109E, E110A, N113D, V124I, Y132H, N160S, N195H, H212N, G226S, D232T, V238A, S251N, S277L, I321R, L325F; nef: -10P, P14H, Q15R, I133T, E176D, M182Q, R194I, M198K; p1: R4K; p17: G49S, T115N; p2: Q8H, -10T, A11N, N12-; p24: T11S, L83T, N139H, D180E, T200N; p6: K27-, R36N; pro: K14R, L93I; rev: E11D, T14K, V16I, T30K, R44K, R50N, E57Q, P77Q, G96Q; tat: K12R, N23T, T58P, P59S, H60Q, S62N, H76Q; vif: I41L, H48N, H56R, V65I, T74V, S130R, A137S; vpr: P37S, N48D, V84Q, R86-; vpu: V14I, V69N, -74H, -75A, -76L, -77L, -78V, -79N, -80N, -81N, -82V"}}}, {"name": "MZ427769", "node_attrs": {"div": 0.16089000000000003, "accession": "MZ427769", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2018.0}, "Strain_name": {"value": "RU_ERS_3195_2018"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A417C", "A437G", "C537G", "C539T", "A604T", "G608A", "G821A", "T852A", "T944G", "G977A", "A1184G", "A1193G", "T1229C", "G1232A", "A1241G", "C1427T", "A1474G", "G1486A", "A1607G", "G1640A", "A1694G", "A1785G", "C1825T", "G1845C", "A1891G", "G2032A", "T2281C", "C2335T", "G2578A", "T2613C", "A2617C", "A2626T", "C2635A", "C2694T", "T2839G", "A2881G", "T2908C", "C2941T", "G2951A", "A3001G", "G3015A", "A3080G", "G3124A", "A3142G", "A3165G", "A3217G", "G3221A", "A3239G", "C3252T", "T3358C", "G3385A", "G3439A", "T3505A", "T3544C", "A3547C", "G3553A", "G3631A", "A3637G", "G3684A", "T3742C", "A3755C", "G3952A", "A4305T", "T4656A", "G4677A", "G4735A", "A4819C", "T4840C", "G4865C", "G4895A", "G4959C", "C4978A", "C5003T", "G5059A", "G5065A", "G5137A", "C5213A", "T5263A", "T5286C", "A5299G", "G5312A", "T5313C", "-5355A", "-5356C", "-5357A", "A5359C", "T5415C", "A5462G", "C5478T", "C5511T", "G5558A", "T5579C", "A5587G", "C5599G", "C5612T", "A5613T", "G5620C", "G5700T", "A5781G", "C5795T", "A5796G", "T5826C", "A5828T", "T5836A", "G5857A", "G5861A", "A5865G", "T5899G", "G5902A", "T5911G", "A6022G", "G6028A", "G6029A", "A6044T", "A6060C", "A6085C", "T6155C", "A6174G", "-6177G", "C6193T", "G6198A", "A6204G", "G6207C", "T6208A", "-6212A", "-6213T", "-6214A", "-6215G", "-6216T", "-6217T", "-6219T", "A6222T", "G6323A", "G6327A", "A6329G", "A6335G", "T6337G", "A6338C", "T6340G", "T6372C", "C6396G", "C6427T", "G6442A", "A6463G", "A6484T", "C6511T", "G6547A", "A6565G", "A6576G", "A6611G", "T6618C", "C6673T", "A6682G", "G6733A", "A6753G", "C6758T", "A6765T", "G6771A", "G6789A", "A6800G", "T6808G", "A6818G", "T6835G", "-6956G", "-6958C", "A6962G", "-6963T", "-6964C", "-6965A", "-6966C", "-6967A", "-6968A", "-6969G", "-6970T", "-6971A", "-6972T", "-6973C", "-6974A", "-6975A", "-6976A", "-6977A", "-6978A", "-6979T", "T6981A", "C6982T", "T6988C", "C6990T", "G6995-", "A6996-", "G6998-", "A7001-", "A7002-", "T7003-", "A7006-", "A7007-", "C7008-", "T7009-", "T7011-", "A7012-", "A7013-", "C7014-", "T7015-", "C7130T", "A7149G", "A7154-", "A7155-", "C7156-", "-7168G", "T7182C", "C7320T", "C7379T", "A7507G", "G7543A", "C7544A", "A7553C", "C7574A", "A7602G", "G7608A", "A7616C", "A7688C", "G7717A", "A7750G", "G7831A", "A7883G", "C7898A", "G7952A", "G7961A", "G7992A", "G8005A", "A8011C", "G8050A", "A8069T", "G8085T", "G8180A", "A8191G", "G8196A", "A8207G", "A8213T", "G8216A", "T8223C", "A8264G", "A8271G", "C8276A", "G8280T", "G8305A", "G8357T", "A8372-", "G8373-", "T8374-", "G8375-", "G8376-", "G8377-", "A8378-", "G8453A", "T8483C", "T8504C", "C8690T", "G8732A", "A8797C", "G8816A", "A8829T", "T8903C", "C8971A", "T8973G", "A9042G"], "INT": ["Q177L"], "RT-p51": ["L173S", "K174N", "E177D", "T200I", "D248E", "A286T", "R307K", "I329V", "K357R", "A376T", "I382V", "T386I"], "RT-p66": ["L173S", "K174N", "E177D", "T200I", "D248E", "A286T", "R307K", "I329V", "K357R", "A376T", "I382V", "T386I", "R530K", "N554H"], "gp120": ["A3T", "E4G", "D19E", "I56M", "E59K", "N64Y", "K69T", "Q77H", "N107S", "N113S", "S114N", "-117T", "Y123F", "D157N", "N159D", "S162Q", "M173T", "T181S", "E241G", "S253G", "I255T", "K300R", "H302Y", "N304I", "S306N", "K316E", "S318R", "R322G", "-326K", "T344K", "N368D", "-370V", "-372S", "N373I", "-374K", "-375N", "N376D", "-377T", "T380-", "T385-", "N432S", "N435E", "S436T", "N437L", "I443T"], "gp41": ["A6V", "L81I", "I84L", "L91I", "N100S", "S102N", "N105H", "N129H", "M176I", "I194V", "Q199K", "D217N", "G220R", "G230D", "S256C", "R261I", "G293S", "S298N", "N302D", "I304L", "D305N", "I307T", "I321V", "Q323R", "L325I", "C326F"], "nef": ["W5C", "V11-", "G12-", "E152A", "S163C"], "p17": ["K28Q", "L68V", "Q90L"], "p24": ["S41T", "D71E"], "p6": ["R18-", "R36E", "P49L"], "p7": ["K3R", "R7K"], "pro": ["G16A"], "rev": ["A15T", "R35K", "R38Q", "D53N", "I55L", "E57K", "A68T", "Q74L", "E79D", "G111E", "K115E"], "tat": ["K29R", "S61N", "L68P", "K71E"], "vif": ["L24I", "V31I", "R50K", "D78A", "V85A", "R93S", "V125L", "P131H", "R158K", "R160K", "R184K"], "vpr": ["P37T", "I61T", "V70T", "V84T", "R85P"], "vpu": ["S2F", "E5Q", "R31S", "T63M"]}, "labels": {"aa": "INT: Q177L; RT-p51: L173S, K174N, E177D, T200I, D248E, A286T, R307K, I329V, K357R, A376T, I382V, T386I; RT-p66: L173S, K174N, E177D, T200I, D248E, A286T, R307K, I329V, K357R, A376T, I382V, T386I, R530K, N554H; gp120: A3T, E4G, D19E, I56M, E59K, N64Y, K69T, Q77H, N107S, N113S, S114N, -117T, Y123F, D157N, N159D, S162Q, M173T, T181S, E241G, S253G, I255T, K300R, H302Y, N304I, S306N, K316E, S318R, R322G, -326K, T344K, N368D, -370V, -372S, N373I, -374K, -375N, N376D, -377T, T380-, T385-, N432S, N435E, S436T, N437L, I443T; gp41: A6V, L81I, I84L, L91I, N100S, S102N, N105H, N129H, M176I, I194V, Q199K, D217N, G220R, G230D, S256C, R261I, G293S, S298N, N302D, I304L, D305N, I307T, I321V, Q323R, L325I, C326F; nef: W5C, V11-, G12-, E152A, S163C; p17: K28Q, L68V, Q90L; p24: S41T, D71E; p6: R18-, R36E, P49L; p7: K3R, R7K; pro: G16A; rev: A15T, R35K, R38Q, D53N, I55L, E57K, A68T, Q74L, E79D, G111E, K115E; tat: K29R, S61N, L68P, K71E; vif: L24I, V31I, R50K, D78A, V85A, R93S, V125L, P131H, R158K, R160K, R184K; vpr: P37T, I61T, V70T, V84T, R85P; vpu: S2F, E5Q, R31S, T63M"}}}]}, {"name": "A6_NODE_0000048", "node_attrs": {"div": 0.12881000000000004, "clade_membership": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A426C", "C537A", "A619G", "G1452A", "A1476G", "G1589A", "C1613T", "A1771G", "A1772G", "T2199C", "G2212T", "A2693G", "A2828G", "A3280G", "A3755C", "T3757G", "A3784T", "G3877A", "A4878G", "G4895A", "C5050A", "A5621T", "A5622T", "C5831T", "G5881A", "A6008G", "A6061G", "C6172-", "G6183-", "G6276A", "A6304G", "G6333A", "A6572G", "G6583A", "C6636A", "T6637G", "T6735A", "G6743A", "G6771A", "-6831T", "G6856A", "A7279G", "A7572G", "C8238G", "C8425G", "G8453A", "A8458G", "A8584T", "A8770T", "A9106G"], "INT": ["E3D"], "RT-p51": ["I35T", "K39N", "T200A"], "RT-p66": ["I35T", "K39N", "T200A", "N554Q"], "gp120": ["N52D", "T261K", "D297N", "S306N", "N437T"], "gp41": ["K90R", "R221G", "A312G"], "nef": ["T28R", "K39R", "Y81F", "Y143F"], "p17": ["I31L", "L68I", "K95R"], "p6": ["K31R"], "p7": ["S4G"], "rev": ["K39R"], "vif": ["I98V", "H127N", "T155K"], "vpr": ["D25E"], "vpu": ["E5V"]}, "labels": {"aa": "INT: E3D; RT-p51: I35T, K39N, T200A; RT-p66: I35T, K39N, T200A, N554Q; gp120: N52D, T261K, D297N, S306N, N437T; gp41: K90R, R221G, A312G; nef: T28R, K39R, Y81F, Y143F; p17: I31L, L68I, K95R; p6: K31R; p7: S4G; rev: K39R; vif: I98V, H127N, T155K; vpr: D25E; vpu: E5V"}}, "children": [{"name": "MH330346", "node_attrs": {"div": 0.15427000000000005, "accession": "MH330346", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2013.0}, "Strain_name": {"value": "ARH068"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["C201T", "G206A", "T214G", "-215A", "-216A", "-217A", "A388G", "A411C", "G413T", "C435A", "A509G", "C531T", "G542A", "G608A", "C614T", "A615G", "A660G", "A661C", "G697A", "C734T", "A762G", "C763T", "C988T", "A989G", "T1004G", "C1115A", "C1211A", "C1280T", "A1292C", "A1367G", "T1421C", "A1450G", "C1490A", "C1550T", "A1673G", "A1718G", "G1719A", "-1741T", "-1745A", "C1903T", "C2075A", "A2182G", "A2254C", "G2273A", "T2280C", "T2365C", "T2392G", "T2613C", "A2617G", "C2728T", "T2737C", "T2779G", "T2863C", "T2873C", "G2925A", "A3043G", "A3099G", "T3132A", "A3164C", "C3310T", "G3379A", "A3449G", "T3450C", "A3574G", "G3643A", "C3649T", "G3664A", "G3718A", "T3904C", "C4042T", "A4369G", "A4384G", "C4396T", "A4558C", "A4570T", "T4652C", "G4689A", "T4702C", "G4774A", "A4806G", "G4859A", "T4932G", "C4965G", "G4995A", "T5018C", "A5033C", "C5056A", "A5057G", "A5136C", "G5137A", "T5147C", "A5155G", "C5168T", "T5179A", "G5215A", "C5292T", "C5306T", "-5355T", "T5415C", "G5558A", "T5579C", "G5629T", "G5652A", "G5668A", "G5699A", "C5707A", "T5708G", "T5778C", "A5781G", "-5812G", "A5824-", "T5826C", "C5827T", "A5995G", "A6024C", "G6029A", "T6163C", "G6167A", "A6169C", "C6170T", "C6171T", "-6172G", "-6177G", "-6180A", "A6182-", "T6184-", "A6189G", "A6191G", "C6193T", "G6195A", "T6199C", "G6201A", "C6202T", "A6203G", "C6205G", "A6209T", "-6210T", "C6211G", "G6220-", "A6229G", "T6246A", "G6253A", "A6254G", "A6273G", "C6318T", "G6336A", "A6415C", "A6456G", "T6460A", "A6471G", "C6477A", "A6573G", "T6582C", "G6638A", "G6668A", "A6746C", "T6747C", "A6764G", "T6766G", "G6774A", "C6780A", "C6790A", "A6791G", "A6798G", "A6800G", "G6807A", "T6808G", "A6809G", "T6810A", "A6817G", "A6823C", "T6824A", "T6828A", "T6829C", "-6830T", "-6832T", "A6833C", "T6849A", "C6850A", "A6854G", "C6859A", "G6871A", "C6885T", "G6894C", "G6936A", "A6945C", "T6946A", "A6947C", "G6948A", "C6951A", "T6953-", "G6954-", "G6955-", "A6957-", "A6959-", "A6960-", "T6961-", "A6962-", "-6974A", "-6975T", "-6976C", "-6977A", "-6978C", "-6979A", "T6981G", "C6982G", "A6983G", "A6985C", "A6989G", "A6996G", "-6999C", "A7005G", "C7016A", "G7018A", "G7026A", "G7033A", "A7089G", "C7127T", "T7147A", "T7150G", "A7154G", "C7156G", "A7186G", "A7245G", "A7274C", "G7281A", "G7289A", "C7544A", "A7583G", "C7590A", "C7618T", "T7677A", "A7688G", "A7689G", "T7692G", "T7702G", "G7712A", "T7747G", "G7769T", "G7921T", "A7996C", "A7998C", "G8005A", "A8014G", "G8085A", "A8119C", "G8141A", "T8164C", "A8173G", "A8213C", "T8293C", "A8338G", "-8370A", "-8371T", "A8400C", "C8507T", "A8531T", "G8537T", "A8549C", "C8552T", "G8558A", "G8561A", "G8590C", "T8595G", "C8676T", "T8723C", "T8740C", "C8775T", "A8797T", "G8814C", "A8829T", "C8855T", "A8892C", "G8909A", "C8992-", "-8993T", "T9028A", "C9039T", "A9082G", "A9099G", "G9100A", "A9101G"], "INT": ["I203M"], "RT-p51": ["E53D", "V60I", "V62A", "L173S", "R277K", "D335G", "F346Y", "K357Q"], "RT-p66": ["E53D", "V60I", "V62A", "L173S", "R277K", "D335G", "F346Y", "K357Q", "I452A"], "gp120": ["D57A", "E59K", "E105N", "N107S", "T110D", "S114E", "S116L", "-117Y", "-118E", "F131Y", "M133I", "T134A", "K140R", "R141K", "S155L", "G161N", "Y163E", "R164K", "K201R", "D202E", "N206S", "T208K", "K240G", "V242N", "M243V", "E262K", "G272S", "I298P", "N304E", "R307K", "A309E", "N312R", "T313A", "Q315R", "K316E", "S318K", "I319E", "K323N", "Y324N", "F325Y", "-326F", "N327H", "-328N", "I332K", "K334E", "N335K", "T344I", "S347T", "G361D", "N364-", "S365-", "T366-", "W367-", "N368-", "N369-", "-372H", "-374I", "-375T", "-376G", "-377A", "-379E", "-381G", "-382A", "-383N", "-384G", "L388I", "R391K", "K412R", "N432K", "N434E", "S436E", "E438-", "T439-", "E464G", "K474Q", "R476K", "E479K"], "gp41": ["L81I", "T94A", "T96N", "N113K", "N114S", "M115N", "I125N", "N129G", "L130R", "D133E", "E137K", "D148E", "A156S", "L206F", "R231S", "D232A", "R261K", "E272D", "E280K", "I304L"], "nef": ["M20L", "E63D", "E65D", "G83A", "F85V", "I133T", "E152V", "E158Q", "S163C", "K184Q"], "p17": ["K18R", "K26H", "L34I", "P66S", "I94V", "N109A", "G121D"], "p2": ["N9-", "-10S", "A11T"], "p24": ["T11V", "L83V", "T86V", "F91L", "D128E", "E187D"], "p6": ["D14N", "R18G", "R36H"], "pro": ["L93I"], "rev": ["A15T", "D53N", "S56G", "T91P", "G98E", "S106P", "I109V"], "tat": ["S61N", "L68P"], "vif": ["A35T", "F39S", "R63K", "T74A", "S116A", "N127D", "A137T", "T157K", "R184Q", "N190S"], "vpr": ["Q11P", "Y15H", "T63I", "V84L", "G89V"], "vpu": ["A8S", "V21I", "R31K", "L34R"]}, "labels": {"aa": "INT: I203M; RT-p51: E53D, V60I, V62A, L173S, R277K, D335G, F346Y, K357Q; RT-p66: E53D, V60I, V62A, L173S, R277K, D335G, F346Y, K357Q, I452A; gp120: D57A, E59K, E105N, N107S, T110D, S114E, S116L, -117Y, -118E, F131Y, M133I, T134A, K140R, R141K, S155L, G161N, Y163E, R164K, K201R, D202E, N206S, T208K, K240G, V242N, M243V, E262K, G272S, I298P, N304E, R307K, A309E, N312R, T313A, Q315R, K316E, S318K, I319E, K323N, Y324N, F325Y, -326F, N327H, -328N, I332K, K334E, N335K, T344I, S347T, G361D, N364-, S365-, T366-, W367-, N368-, N369-, -372H, -374I, -375T, -376G, -377A, -379E, -381G, -382A, -383N, -384G, L388I, R391K, K412R, N432K, N434E, S436E, E438-, T439-, E464G, K474Q, R476K, E479K; gp41: L81I, T94A, T96N, N113K, N114S, M115N, I125N, N129G, L130R, D133E, E137K, D148E, A156S, L206F, R231S, D232A, R261K, E272D, E280K, I304L; nef: M20L, E63D, E65D, G83A, F85V, I133T, E152V, E158Q, S163C, K184Q; p17: K18R, K26H, L34I, P66S, I94V, N109A, G121D; p2: N9-, -10S, A11T; p24: T11V, L83V, T86V, F91L, D128E, E187D; p6: D14N, R18G, R36H; pro: L93I; rev: A15T, D53N, S56G, T91P, G98E, S106P, I109V; tat: S61N, L68P; vif: A35T, F39S, R63K, T74A, S116A, N127D, A137T, T157K, R184Q, N190S; vpr: Q11P, Y15H, T63I, V84L, G89V; vpu: A8S, V21I, R31K, L34R"}}}, {"name": "MT369955", "node_attrs": {"div": 0.16270000000000004, "accession": "MT369955", "clade_membership": {"value": "A6"}, "country": {"value": "RU"}, "date": {"value": 2016.0}, "Strain_name": {"value": "RU_ERS_1036_2016"}, "LANL_subtype": {"value": "A6"}}, "branch_attrs": {"mutations": {"nuc": ["A263C", "A278G", "G279C", "-280G", "G298A", "G304A", "A417C", "A419C", "G455A", "C467T", "G518A", "A523T", "A534T", "A537G", "A557G", "A699G", "G717A", "C767T", "G803A", "C827T", "T851C", "A854T", "G860A", "G978T", "G987A", "G992A", "T1001C", "C1008G", "A1025C", "G1078C", "C1091T", "C1103T", "C1330A", "A1343G", "G1404A", "A1415C", "G1419A", "A1459G", "G1487A", "C1541T", "T1646G", "T1682C", "A1691G", "A1697G", "G1731A", "-1741A", "-1745C", "A1783C", "A1786G", "T1796C", "C1826A", "A1835G", "G1852A", "A1857G", "A1897C", "A1918G", "A1946C", "A1963G", "C1970G", "C1985A", "T1986C", "A1988G", "A1993T", "A2002G", "G2009A", "C2010T", "T2011A", "A2012G", "A2018T", "A2020G", "A2061G", "G2074A", "G2155A", "T2206C", "G2311A", "G2363A", "A2404G", "C2456G", "G2463A", "A2498G", "A2545C", "T2567G", "C2596A", "G2602A", "A2617C", "A2645G", "A2685C", "A2734G", "G2878A", "A2920G", "C3023T", "T3034A", "G3037A", "G3085A", "C3100A", "A3103G", "A3142G", "T3303C", "G3382A", "G3385A", "A3388T", "T3399C", "G3409A", "G3442A", "A3451G", "A3529G", "T3559C", "A3670G", "G3737A", "A3775G", "T3820C", "T3865C", "G3896A", "G3925A", "T4024C", "A4096G", "T4147G", "T4216C", "C4288T", "C4501G", "A4555G", "T4640C", "A4643G", "A4644G", "C4645T", "A4696G", "G4735A", "A4786C", "A4858T", "G4860A", "A4937G", "G4959T", "C4965A", "T4991C", "G5066A", "C5091T", "G5128A", "G5170A", "T5179G", "T5182C", "T5203C", "C5214T", "T5224G", "A5233G", "C5242T", "A5246G", "T5294C", "T5354C", "-5355A", "T5356A", "G5357T", "C5358A", "A5359T", "A5361C", "G5362A", "G5363A", "T5412G", "A5576C", "C5578A", "C5612A", "A5613C", "C5614T", "T5628G", "G5629A", "G5653T", "A5680T", "G5687C", "T5704G", "C5727T", "G5730A", "A5748G", "G5783A", "G5784A", "T5807G", "A5828T", "T5829G", "A5840G", "A5866C", "A5884G", "C5924T", "T5929C", "A5962G", "T6007C", "C6052T", "A6131C", "T6148C", "C6170-", "C6171-", "A6173-", "A6174-", "C6175-", "A6176-", "C6178-", "A6179-", "T6181-", "A6182C", "-6183C", "T6187A", "A6188C", "A6189T", "A6194G", "C6196A", "G6198C", "A6203T", "A6204C", "C6205T", "G6207A", "-6210A", "-6212G", "-6213A", "-6214A", "-6215A", "-6216G", "-6217T", "-6218G", "-6219T", "T6221A", "A6222G", "A6234G", "A6275C", "A6281T", "T6317C", "G6327T", "A6335G", "A6339G", "C6382T", "T6466G", "C6487T", "C6496T", "A6525G", "G6569A", "G6593A", "T6618C", "A6691C", "G6693C", "A6714G", "A6716G", "A6723T", "A6751G", "A6764C", "A6765T", "G6789A", "T6808C", "A6820G", "-6830G", "A6833-", "A6834-", "C6838T", "T6860C", "C6861A", "T6875G", "A6927G", "T6932G", "-6956T", "-6958T", "A6962G", "-6963A", "-6964A", "-6965A", "-6966C", "-6967T", "C6982T", "C6984T", "G6995C", "G6998A", "-6999A", "A7094G", "G7101A", "C7124A", "G7152A", "A7155C", "A7161G", "C7165T", "-7166G", "-7167A", "-7168G", "-7169A", "-7170C", "-7171C", "A7181G", "T7182C", "G7238C", "G7366A", "A7372G", "T7373C", "G7517T", "A7523G", "A7553C", "T7622A", "G7633C", "A7668G", "A7691C", "A7701G", "G7773A", "A7782G", "G7790A", "A7791G", "T7796A", "T7805C", "A7818G", "A7822G", "A7826G", "T7929G", "C7932T", "G7947A", "C7960T", "C7999G", "G8005C", "A8011C", "C8051A", "A8069T", "C8097T", "A8111G", "G8134C", "G8135A", "G8172A", "A8222C", "G8240A", "G8268T", "C8276T", "T8281C", "C8286G", "A8367-", "G8368-", "C8369-", "A8372-", "G8373A", "G8375A", "C8382T", "G8388A", "T8492C", "T8495C", "T8505A", "G8522A", "C8699T", "A8739G", "A8794C", "A8798G", "C8809A", "C8810T", "A8815T", "A8852G", "A8859G", "A8873G", "G8875A", "A8917C", "G8970C", "C8971T", "T9073C", "G9095T", "C9108T", "-9109G"], "INT": ["D41N", "M50I"], "RT-p51": ["V90I", "H121D", "S123N", "I135V", "S158A", "K174N", "M184V", "Q197P", "D335E", "M403T", "K431N", "V435A"], "RT-p66": ["V90I", "H121D", "S123N", "I135V", "S158A", "K174N", "M184V", "Q197P", "D335E", "M403T", "K431N", "V435A", "I452M", "V548I"], "gp120": ["E4D", "K93Q", "N107K", "S109G", "N111S", "S114N", "S115E", "-117V", "-118S", "-119E", "-120E", "-121M", "-122R", "E125-", "M126-", "K127-", "R141Q", "T143S", "S155P", "N158I", "S160N", "N204K", "K224R", "E239K", "K240E", "E247K", "I255T", "R280P", "Q287R", "T288A", "Y290F", "N304L", "-326V", "S336H", "L341V", "N358S", "S360A", "-372Q", "-374N", "-375E", "N378-", "T380-", "I414V", "R416K", "L424I", "N434T", "S436G", "I443A", "E462Q"], "gp41": ["V72L", "R74G", "I84L", "S107T", "E110D", "K122R", "D133G", "S157N", "N160S", "D163S", "S165T", "K172R", "I173M", "I175V", "L209R", "T210I", "G215E", "D232E", "S256C", "S265L", "T270A", "G278S", "G290E", "I307L", "G313R", "L325F", "A328G"], "nef": ["S9-", "I10-", "V11I", "P14S", "V16I", "C55S", "I133V", "E151A", "A156D", "E158V", "M173V", "R178K", "K192T"], "p1": ["I5M"], "p17": ["K28H", "Q63L", "T67S", "I68V", "T122A", "V128I"], "p2": ["-10T", "A11S", "N12-"], "p24": ["P93A", "E98D", "T200N", "G225S", "V230I"], "p6": ["I21K", "Q35P"], "pro": ["L10I", "I13V", "K20R", "L33F", "I50L", "Q58E", "L63T", "I64V", "E65D", "A71I", "I72V", "T74S", "N88S"], "rev": ["I21L", "R38W", "Q51E", "D53H", "I55L", "A68E", "Q74L", "D88G", "G96Q"], "tat": ["N12K", "N67T", "L68I", "L74V", "P75S", "D80N", "P84L"], "vif": ["T20V", "E37G", "R50K", "K67T", "Q91L", "E92K", "V125L", "R181K"], "vpr": ["P37L", "H40Q", "N48D", "V84N", "Q85I", "R86Q", "G89R"], "vpu": ["T2N", "P3S", "C7W", "A8T", "I25L", "G27A", "L33V", "V67G"]}, "labels": {"aa": "INT: D41N, M50I; RT-p51: V90I, H121D, S123N, I135V, S158A, K174N, M184V, Q197P, D335E, M403T, K431N, V435A; RT-p66: V90I, H121D, S123N, I135V, S158A, K174N, M184V, Q197P, D335E, M403T, K431N, V435A, I452M, V548I; gp120: E4D, K93Q, N107K, S109G, N111S, S114N, S115E, -117V, -118S, -119E, -120E, -121M, -122R, E125-, M126-, K127-, R141Q, T143S, S155P, N158I, S160N, N204K, K224R, E239K, K240E, E247K, I255T, R280P, Q287R, T288A, Y290F, N304L, -326V, S336H, L341V, N358S, S360A, -372Q, -374N, -375E, N378-, T380-, I414V, R416K, L424I, N434T, S436G, I443A, E462Q; gp41: V72L, R74G, I84L, S107T, E110D, K122R, D133G, S157N, N160S, D163S, S165T, K172R, I173M, I175V, L209R, T210I, G215E, D232E, S256C, S265L, T270A, G278S, G290E, I307L, G313R, L325F, A328G; nef: S9-, I10-, V11I, P14S, V16I, C55S, I133V, E151A, A156D, E158V, M173V, R178K, K192T; p1: I5M; p17: K28H, Q63L, T67S, I68V, T122A, V128I; p2: -10T, A11S, N12-; p24: P93A, E98D, T200N, G225S, V230I; p6: I21K, Q35P; pro: L10I, I13V, K20R, L33F, I50L, Q58E, L63T, I64V, E65D, A71I, I72V, T74S, N88S; rev: I21L, R38W, Q51E, D53H, I55L, A68E, Q74L, D88G, G96Q; tat: N12K, N67T, L68I, L74V, P75S, D80N, P84L; vif: T20V, E37G, R50K, K67T, Q91L, E92K, V125L, R181K; vpr: P37L, H40Q, N48D, V84N, Q85I, R86Q, G89R; vpu: T2N, P3S, C7W, A8T, I25L, G27A, L33V, V67G"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, {"name": "NODE_0000948", "node_attrs": {"div": 0.07107999999999999, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["G480A", "T549A", "A774T", "T1271G", "C1350A", "A1449C", "-1459A", "A1720T", "A2380G", "T2434C", "T2499C", "G2518A", "G2630A", "A3162G", "A3200G", "C3222T", "T3550C", "A3816G", "C3994T", "G4156A", "C4883T", "C5091T", "C5478T", "C5538G", "A5613T", "A5643G", "T5653C", "G5699A", "G5907A", "T6046G", "-6189C", "T6199-", "-6222A", "-6225G", "A6855C", "-7162A", "G7315A", 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"L198K", "H199Y", "E201D", "F202W", "C206R"], "p17": ["V35I", "M61I", "P66S", "D93E", "N109K", "K110R", "S111H"], "p2": ["S5T", "T8Q", "N9H", "-11A", "-12N"], "p24": ["A6S", "E29D", "A31G", "Q50H", "I83V", "T110N", "I129M", "T207S"], "p6": ["M17R", "S23P", "V39I"], "p7": ["R3K", "R7K"], "pro": ["I15V"], "rev": ["K20R", "Q24E", "Y28F", "R38Q", "K39R", "D53N", "G65E", "A68T", "L73F", "R80G", "L83I", "-101S", "V104G", "E112*"], "tat": ["H12Q", "N23S", "K24N", "V36A", "P70R", "T77A"], "vif": ["R19K", "K33R", "N37K", "F39V", "R41K", "H56Y", "D61E", "K77R", "H80Q", "D113N", "I124L", "R132S", "K157E", "N190S"], "vpr": ["E25D", "H45Y", "I46V", "R62Q", "I84T", "V89G"], "vpu": ["T2Q", "S3A", "V10I", "L16V", "L34R", "R45K", "E60D", "L61T", "S62E", "T63E", "V65Y", "E66T", "V67L", "G68-", "-69V", "-70E", "-71V", "-72G", "-73D", "-74N", "-75I", "-76P", "-77W", "-78I", "-79D"]}, "labels": {"aa": "INT: M50K, K211Q, T218I; RT-p51: K102Q, S123G, F214L, E248D, A272P, I292V, T294V, I326V, V375I, R390K, M403T; RT-p66: K102Q, S123G, F214L, E248D, A272P, I292V, T294V, I326V, V375I, R390K, E399D, M403T, S554N; gp120: N5K, D34E, Q35R, T104H, -105N, -106V, -107T, N108K, -112S, -114S, -115N, -116S, -123P, -124G, F131Y, I133V, E136A, L137I, K141R, K143N, K150R, L151V, N158E, S181T, E204D, P210T, S228T, E240G, E241K, N261D, Q265Y, E309D, Q315Y, A318V, K319E, K329R, G335A, S336P, -368Y, -370S, -372W, -373S, -374T, -375Q, -376K, -377S, -379G, -381E, -382K, I395V, N397K, L424I, N433L, T436S, N437F, D446N, R448K; gp41: V28A, H53Q, Q108Y, N109S, I130L, D163N, K172R, A189T, Q199K, T210S, N212S, R214G, G220R, R221G, D247N, K283Q, W286G, A310T; nef: S9V, I10-, A11-, P14A, V16I, Q22K, E28K, L37P, G41R, T46E, A49-, T51N, W57R, A60E, Y102H, K105R, H116N, A156T, E158G, I168V, M173V, E176T, R178G, R196A, L198K, H199Y, E201D, F202W, C206R; p17: V35I, M61I, P66S, D93E, N109K, K110R, S111H; p2: S5T, T8Q, N9H, -11A, -12N; p24: A6S, E29D, A31G, Q50H, I83V, T110N, I129M, T207S; p6: M17R, S23P, V39I; p7: R3K, R7K; pro: I15V; rev: K20R, Q24E, Y28F, R38Q, K39R, D53N, G65E, A68T, L73F, R80G, L83I, -101S, V104G, E112*; tat: H12Q, N23S, K24N, V36A, P70R, T77A; vif: R19K, K33R, N37K, F39V, R41K, H56Y, D61E, K77R, H80Q, D113N, I124L, R132S, K157E, N190S; vpr: E25D, H45Y, I46V, R62Q, I84T, V89G; vpu: T2Q, S3A, V10I, L16V, L34R, R45K, E60D, L61T, S62E, T63E, V65Y, E66T, V67L, G68-, -69V, -70E, -71V, -72G, -73D, -74N, -75I, -76P, -77W, -78I, -79D"}}}, {"name": "A3_NODE_0000001", "node_attrs": {"div": 0.11210999999999999, "clade_membership": {"value": "A3"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "C379A", "A380G", "A417C", "C435T", "G495A", "A557G", "A562G", "T567C", "T596C", "G706A", "C722T", "C767T", "C897T", "G956A", "T1055G", "C1115A", "A1250G", "A1400G", "G1718T", "T1724G", "G1733A", "-1746T", "-1747C", "-1748C", "T1752C", "T1754-", "C1755-", "C1756-", "A1783C", "A1804G", "C1826A", "A1839G", "T2041C", "A2317G", "T2347A", "A2524G", "G2710A", "A2764G", "C2909G", "T2968C", "T3045C", "G3173T", "A3247G", "T3577C", "G3616A", "G3630A", "A3755T", "G4151A", "C4181A", "G4553A", "T4656C", "G4677A", "A4735G", "G4913A", "G4995A", "A5038G", "G5059A", "T5084C", "T5179A", "T5188G", "T5194A", "C5221A", "T5275G", "T5293G", "T5391C", "G5534A", "C5611A", "T5628G", "T5679C", "T5704G", "G5717A", "A5720G", "G5739A", "A5788T", "C5789T", "A5793T", "A5796C", "A5806G", "-5809G", "-5810G", "-5813A", "-5814T", "-5817T", "-5818A", "A5825-", "A5828-", "T5829-", "A5881G", "A6020T", "-6207G", "-6213C", "-6215A", "-6216A", "-6217G", "-6218G", "-6220C", "G6225A", "A6229G", "A6232G", "T6361C", "A6502G", "C6511T", "A6568G", "A6636T", "G6638A", "G6640T", "A6684C", "T6694C", "G6779A", "A6800C", "A6858G", "G6871A", "C6937T", "-6995G", "C7014A", "A7032G", "A7040G", "A7043C", "A7093G", "A7102C", "G7106A", "T7107C", "A7138G", "A7148G", "C7164A", "G7477A", "A7553C", "A7570G", "G7765A", "T7801A", "C7805T", "A7903T", "G7915C", "C8037T", "C8051A", "C8071T", "A8130-", "C8131-", "A8132-", "G8133-", "G8134-", "G8135-", "G8136-", "G8137-", "T8138-", "G8139-", "G8140-", "G8141-", "C8146T", "T8171C", "T8182G", "A8196G", "T8197C", "G8216A", "T8223C", "C8232T", "G8241A", "-8370C", "T8374C", "G8385A", "A8396T", "A8479C", "A8484C", "C8485A", "-8487G", "-8488C", "-8489A", "A8493-", "A8494-", "A8573G", "A8655C", "A8660G", "A8666C", "A8696G", "A8735G", "T8740C", "C8741T", "A8797C", "G8875A", "A8892C", "A8893G", "T9040C"], "INT": ["V126M", "Q136K", "V260I"], "RT-p51": ["V317A", "A360S"], "RT-p66": ["V317A", "A360S", "R512K"], "gp120": ["I56L", "I126M", "E204K", "N261V", "E262N", "K277T", "H280R", "K316Q", "N327-", "N369-", "-379N", "-381T", "K393R", "I396V", "N397H", "K416N", "V418T", "N432D"], "gp41": ["I84L", "D113E", "N166K", "A245V", "R276Q", "L277G", "G278-", "W279-", "E280-", "G281-", "N298S", "D305N", "I307T", "A310V", "G313E"], "nef": ["I10L", "E15K", "E18D", "-48Q", "A50S", "T51-", "S52-", "K105Q", "E108D", "I133T", "E152A", "R178K", "K184R"], "p17": ["A15K", "K28Q", "A54T", "K76R", "S124N"], "p24": ["D128E"], "p6": ["E13D", "Q35P", "K42R"], "pro": ["L10I", "K14R"], "rev": ["D7N", "A68E", "Q95G", "G96S", "V97*", "G98I", "G99S", "P100-", "I102-", "S103-", "V108A", "*117Q"], "tat": ["R53K"], "vif": ["V31I", "K50R", "K77Q", "A137T", "K151R", "R158K"], "vpr": ["H28Q", "I63M", "S96P"], "vpu": ["C7W", "L33V", "R37K", "K38R", "N80D"]}, "labels": {"aa": "INT: V126M, Q136K, V260I; RT-p51: V317A, A360S; RT-p66: V317A, A360S, R512K; gp120: I56L, I126M, E204K, N261V, E262N, K277T, H280R, K316Q, N327-, N369-, -379N, -381T, K393R, I396V, N397H, K416N, V418T, N432D; gp41: I84L, D113E, N166K, A245V, R276Q, L277G, G278-, W279-, E280-, G281-, N298S, D305N, I307T, A310V, G313E; nef: I10L, E15K, E18D, -48Q, A50S, T51-, S52-, K105Q, E108D, I133T, E152A, R178K, K184R; p17: A15K, K28Q, A54T, K76R, S124N; p24: D128E; p6: E13D, Q35P, K42R; pro: L10I, K14R; rev: D7N, A68E, Q95G, G96S, V97*, G98I, G99S, P100-, I102-, S103-, V108A, *117Q; tat: R53K; vif: V31I, K50R, K77Q, A137T, K151R, R158K; vpr: H28Q, I63M, S96P; vpu: C7W, L33V, R37K, K38R, N80D"}}, "children": [{"name": "AY521629", "node_attrs": {"div": 0.12905, "accession": "AY521629", "clade_membership": {"value": "A3"}, "country": {"value": "SN"}, "date": {"value": 2001.0}, "Strain_name": {"value": "DDI579"}, "LANL_subtype": {"value": "A3"}}, "branch_attrs": {"mutations": {"nuc": ["G375A", "G428A", "G519C", "T571A", "A599G", "G664A", "G667A", "G693A", "G870A", "C917T", "A980G", "G1106A", "A1142G", "G1232A", "A1271T", "A1277G", "T1409C", "G1452A", "A1461G", "C1541T", "T1646C", "G1657A", "G1673A", "A1894G", "C2029T", "G2155A", "A2212G", "G2248C", "G2374A", "A2422G", "T2494C", "G2669A", "G2707A", "A2842G", "G2878A", "A2925G", "G3098A", "A3142G", "C3292A", "G3324A", "T3328C", "G3398A", "C3504T", "T3505G", "A3629C", "A3637C", "G3676A", "C3691T", "G3772A", "A4064G", "A4694G", "A4721C", "A4722T", "T4738C", "A4775G", "A4951G", "T5003C", "A5049G", "C5052T", "A5065G", "T5182G", "T5197C", "G5448T", "G5635A", "-5820C", "T5832-", "T5836C", "G5837T", "A5839T", "G5857A", "A6019G", "T6091C", "A6131C", "T6155C", "-6165C", "-6167G", "-6169C", "-6170A", "-6171T", "-6172C", "-6173A", "-6174A", "-6175G", "-6177A", "-6178C", "-6179T", "-6180T", "A6191-", "A6192-", "C6193-", "A6194-", "A6197-", "-6205G", "-6206A", "A6212T", "-6219C", "-6221T", "G6276A", "T6283A", "G6284A", "T6325G", "A6329G", "A6330G", "G6336A", "T6337C", "C6347T", "T6460G", "A6646G", "A6654G", "A6751G", "C6777A", "A6781T", "A6786C", "A6788G", "A6790G", "G6809A", "G6819A", "A6822G", "A6857G", "A6959-", "A6960-", "T6961-", "A6965-", "A6985-", "A6989G", "-6994G", "A6996C", "-6998A", "-6999T", "-7000C", "C7002A", "A7012C", "T7015C", "A7155G", "G7171A", "G7190A", "G7197A", "G7269A", "A7279G", "A7375G", "G7517A", "G7519A", "G7608A", "A7617G", "T7618A", "A7621G", "A7628G", "T7630G", "A7641G", "A7701G", "G7717A", "A7782G", "A7801G", "A7929T", "A7942C", "G7943A", "T7950C", "G7962A", "A8011C", "G8036A", "C8047T", "C8165G", "T8206C", "G8264A", "C8296T", "A8309G", "C8369A", "T8371A", "C8374A", "C8383A", "T8414C", "A8424G", "G8454A", "A8455G", "C8471A", "G8558A", "G8796T", "G8815A", "A8823-", "A8824-", "C8825-", "A8826-", "A8827-", "C8828-", "A8829-", "G8830-", "C8831-", "A8844G", "G8868A", "T8923C", "C8934A", "G8977A", "C8979A", "T9012C"], "INT": ["T97A"], "RT-p51": ["D192N", "K277R", "D335N", "D399E", "C410Y", "V435I"], "RT-p66": ["D192N", "K277R", "D335N", "C410Y", "V435I", "T470M", "K512Q", "E514D"], "gp120": ["K93Q", "-105D", "-106I", "-107K", "-109F", "-112T", "N113-", "V144I", "K150R", "N157E", "N159G", "D202E", "N267S", "E309N", "N311T", "K312E", "R322K", "K323R", "N332I", "T371-", "N379D", "T381A", "-382I", "-383N", "-384D", "-385T", "N434S", "D446N", "R448K"], "gp41": ["I24M", "V72I", "S102N", "N105R", "N109E", "E113G", "N133S", "N160S", "H209L", "L216P", "G220E", "V245I", "L288V", "V321I", "I336V"], "nef": ["S9R", "L10Q", "A11E", "P14H", "D38S", "A152S", "N161-", "N162-", "S163-", "I168V", "E176K", "I194T", "L198M"], "p1": ["S9N"], "p17": ["D14N", "M31I", "E62Q", "F79Y", "S111N", "A120T"], "p2": ["-10V", "I13-"], "p24": ["A47T", "I83M", "E180D"], "rev": ["R32Q", "I55L", "C63Y", "P67S", "S106C"], "tat": ["N23S", "K24N", "I74L", "Q78P", "S81P", "E85K"], "vif": ["N37D", "E45D", "S46C", "V51A", "I63M", "K122R", "T155A", "P156S", "K160R"], "vpu": ["V10I", "N81D"]}, "labels": {"aa": "INT: T97A; RT-p51: D192N, K277R, D335N, D399E, C410Y, V435I; RT-p66: D192N, K277R, D335N, C410Y, V435I, T470M, K512Q, E514D; gp120: K93Q, -105D, -106I, -107K, -109F, -112T, N113-, V144I, K150R, N157E, N159G, D202E, N267S, E309N, N311T, K312E, R322K, K323R, N332I, T371-, N379D, T381A, -382I, -383N, -384D, -385T, N434S, D446N, R448K; gp41: I24M, V72I, S102N, N105R, N109E, E113G, N133S, N160S, H209L, L216P, G220E, V245I, L288V, V321I, I336V; nef: S9R, L10Q, A11E, P14H, D38S, A152S, N161-, N162-, S163-, I168V, E176K, I194T, L198M; p1: S9N; p17: D14N, M31I, E62Q, F79Y, S111N, A120T; p2: -10V, I13-; p24: A47T, I83M, E180D; rev: R32Q, I55L, C63Y, P67S, S106C; tat: N23S, K24N, I74L, Q78P, S81P, E85K; vif: N37D, E45D, S46C, V51A, I63M, K122R, T155A, P156S, K160R; vpu: V10I, N81D"}}}, {"name": "AY521630", "node_attrs": {"div": 0.12371999999999998, "accession": "AY521630", "clade_membership": {"value": "A3"}, "country": {"value": "SN"}, "date": {"value": 1996.0}, "Strain_name": {"value": "DDJ360"}, "LANL_subtype": {"value": "A3"}}, "branch_attrs": {"mutations": {"nuc": ["G438A", "A521T", "C606A", "C634T", "T662A", "A663G", "C1446A", "A1448C", "C1541A", "G1661A", "T1676C", "A1743C", "T1792C", "A1963G", "G2459A", "A2460T", "G2463A", "C2613T", "A2937G", "C3140T", "G3168A", "G3264A", "G3385A", "C3469A", "G3569A", "C3763T", "T3850C", "A3874G", "G4063A", "A4175G", "G4695A", "G4923A", "A4993C", "C5062T", "A5094G", "C5180A", "C5237T", "G5444A", "C5445T", "C5551T", "G5558A", "C5612A", "A5621G", "T5624A", "A5680T", "G5700A", "A5845G", "G6046A", "T6163-", "A6164-", "C6166-", "A6168-", "A6176-", "C6183G", "T6187C", "C6189T", "-6195G", "-6196C", "-6198C", "-6199C", "-6200A", "-6201G", "A6208T", "-6219A", "-6221A", "T6223G", "A6282G", "G6303A", "G6323A", "G6339A", "A6394T", "T6445C", "C6548T", "A6639C", "G6743A", "T6745G", "A6765C", "T6772A", "A6779C", "A6789C", "A6790C", "A6811C", "T6849A", "T6860C", "-6962A", "-6963G", "-6964C", "-6966C", "-6967T", "-6968A", "-6969C", "-6970C", "-6971A", "-6972T", "-6973C", "-6974A", "-6975A", "-6976G", "-6977C", "-6978A", "-6979G", "-6980A", "-6981A", "-6982T", "-6983T", "-6984T", "A6987C", "C6993A", "-6994T", "T7003G", "A7005G", "C7006G", "A7007G", "C7008T", "T7009A", "C7088A", "T7130C", "A7163G", "C7170A", "G7289C", "C7328T", "T7386C", "A7463T", "A7533G", "A7589G", "A7590C", "T7642G", "G7657A", "G7773A", "A8023C", "A8399G", "C8460T", "G8506C", "C8509T", "A8525T", "A8531C", "A8584T", "G8590C", "T8597C", "T8646C", "C8702T", "A8746T", "T8786G", "G8929A", "C8978A", "C9129A"], "INT": ["N134D"], "RT-p51": ["E122I", "S123N", "S173L", "K281R", "R358K", "R390K"], "RT-p66": ["E122I", "S123N", "S173L", "K281R", "R358K", "R390K", "E399D", "E492K"], "gp120": ["T104S", "N108-", "T110-", "-112I", "-114S", "-115T", "-121D", "-123K", "-124E", "K141R", "K143S", "N161S", "S162N", "N262T", "D297K", "N304T", "S306R", "E308A", "E309Q", "K312T", "K319D", "G335R", "S336P", "-368N", "-369S", "-370T", "-372I", "-373K", "-374Q", "-375N", "-376L", "-377T", "T380D", "-382G", "-383V", "T387N", "Q412K", "N437D", "T439K", "K472R", "E479Q"], "gp41": ["L9F", "V28A", "M54L", "K77R", "N96A", "S157N", "R214G"], "nef": ["E28K", "H40Y", "C55S", "T56I", "Q61H", "E63D", "Y81F", "G83A", "Y102H", "Y135F", "E158G", "R196Q"], "p17": ["V35I", "E62D", "A100V", "N109K", "K110G"], "p2": ["T8-", "-10H", "-11A", "-12N"], "p6": ["T22P", "L38S"], "rev": ["A15T", "I59L"], "tat": ["P59S", "S61N"], "vif": ["D113N", "Q136P", "T159I", "T170A"], "vpr": ["L26I", "H45Y"], "vpu": ["T2N", "E5G", "I6N", "I25L", "-69D", "-70D", "-71I", "-76P", "-77W", "-78N", "-79D"]}, "labels": {"aa": "INT: N134D; RT-p51: E122I, S123N, S173L, K281R, R358K, R390K; RT-p66: E122I, S123N, S173L, K281R, R358K, R390K, E399D, E492K; gp120: T104S, N108-, T110-, -112I, -114S, -115T, -121D, -123K, -124E, K141R, K143S, N161S, S162N, N262T, D297K, N304T, S306R, E308A, E309Q, K312T, K319D, G335R, S336P, -368N, -369S, -370T, -372I, -373K, -374Q, -375N, -376L, -377T, T380D, -382G, -383V, T387N, Q412K, N437D, T439K, K472R, E479Q; gp41: L9F, V28A, M54L, K77R, N96A, S157N, R214G; nef: E28K, H40Y, C55S, T56I, Q61H, E63D, Y81F, G83A, Y102H, Y135F, E158G, R196Q; p17: V35I, E62D, A100V, N109K, K110G; p2: T8-, -10H, -11A, -12N; p6: T22P, L38S; rev: A15T, I59L; tat: P59S, S61N; vif: D113N, Q136P, T159I, T170A; vpr: L26I, H45Y; vpu: T2N, E5G, I6N, I25L, -69D, -70D, -71I, -76P, -77W, -78N, -79D"}}}]}]}, {"name": "NODE_0000951", "node_attrs": {"div": 0.07991, "clade_membership": {"value": "other"}}, "branch_attrs": {"mutations": {"nuc": ["-49G", "T636C", "G683A", "G762A", "T851C", "T1063C", "G1192A", "A1278G", "A1279G", "C1280T", "G1313A", "G1673A", "A1963G", "G1968A", "T2071C", "A2113G", "A2211C", "A2566G", "A3217G", "C3225T", "A3226G", "G3307C", "A3682C", "A3952G", "A4112G", "C4471T", "A4858T", "G4859A", "A4968G", "G4982T", "A5134C", "G5382T", "A5432C", "G5471A", "G5472T", "T5659C", "A5787T", "C5795A", "G5811-", "T5836G", "A5856G", "C5878T", "A5881T", "T6181C", "T6187C", "-6200A", "-6221A", "-6223A", "A6268G", "C6318A", "C6347T", "G6457T", "A6464G", "C6925T", "-6964C", "-6971A", "-6978A", "A6990G", "-7000A", "-7002A", "G7773A", "T7801C", "A7948T", "G8143A", "A8152G", "A8196T", "G8242C", "G8276A", "C8277T", "A8323C", "C8485T", "A8496C", "G8499C", "G8558A", "T8568C", "T8585C", "A8653G", "A8804G", "G8805A", "C8810T", "G8880A", "T8881C", "T8903C", "C8913T", "C8978A"], "INT": ["I113V"], "RT-p51": ["K39T", "T377M", "E404D"], "RT-p66": ["K39T", "T377M", "E404D", "E529D"], "gp120": ["K1S", "T3A", "N113-", "P155Q", "N161S", "K201N", "-384D", "K472R"], "gp41": ["S157N", "N298I", "A325I"], "nef": ["T48I", "A49N", "A50H", "T51P", "A53-", "Q104R", "A151E", "E155K", "V180T", "I194R"], "p24": ["V11I", "L111P", "S120G", "R154K", "N183G"], "pro": ["R57K"], "rev": ["R32K", "T34S", "G99R", "I102V", "E116N"], "tat": ["E2D", "K19T", "W32Y", "G57R"], "vif": ["Q91L", "I128V", "R130S", "H183P"], "vpr": ["R86G", "A93S"]}, "labels": {"aa": "INT: I113V; RT-p51: K39T, T377M, E404D; RT-p66: K39T, T377M, E404D, E529D; gp120: K1S, T3A, N113-, P155Q, N161S, K201N, -384D, K472R; gp41: S157N, N298I, A325I; nef: T48I, A49N, A50H, T51P, A53-, Q104R, A151E, E155K, V180T, I194R; p24: V11I, L111P, S120G, R154K, N183G; pro: R57K; rev: R32K, T34S, G99R, I102V, E116N; tat: E2D, K19T, W32Y, G57R; vif: Q91L, I128V, R130S, H183P; vpr: R86G, A93S"}}, "children": [{"name": "results/subtype_trees/CRF35_A1D.nwk", "node_attrs": {"div": 0.12355, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "G365A", "G428A", "C467T", "G495A", "T506C", "A549T", "A562G", "T596C", "G607A", "A613C", "T614G", "G665A", "G677A", "A678G", "G712A", "A715-", "A776G", "T978A", "A980G", "A986G", "C1005G", "G1019A", "C1040T", "T1058C", "A1073G", "G1078C", "G1090A", "C1103T", "T1121C", "A1142G", "A1160G", "T1172C", "C1187T", "C1211T", "C1295A", "G1298A", "C1299T", "T1334C", "T1335C", "G1404A", "G1418A", "G1424A", "G1486A", "G1568A", "G1589A", "G1657A", "T1720G", "T1724C", "A1728T", "G1730T", "A1736G", "C1745G", "T1749C", "C1756A", "G1760A", "A1776G", "A1781G", "C1782A", "A1783T", "-1785T", "-1786A", "T1795C", "T1828C", "A1846G", "T1854A", "A1857G", "A1858G", "T1957C", "G1981A", "A2026G", "T2095C", "G2113T", "A2127G", "A2128G", "G2215A", "G2273A", "G2311A", "A2320G", "C2326T", "G2332A", "C2353T", "C2356T", "T2365C", "A2368G", "T2392C", "C2434T", "T2452C", "G2456T", "A2462G", "G2463A", "C2521T", "G2548A", "G2578A", "A2593G", "G2602A", "C2605T", "T2612A", "C2613A", "A2641G", "C2694T", "G2704A", "A2728G", "T2740C", "A2752G", "A2788T", "C2806T", "C2818A", "C2828A", "A2829T", "C2845A", "A2872G", "C2885T", 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"V60I", "D121Y", "S123D", "S173K", "T200I", "Q245M", "D250E", "A272P", "A286T", "T294P", "D312E", "R356K", "V376T", "T400A", "R512K", "I526V", "S554N"], "gp120": ["A3V", "D34E", "N57H", "N71K", "-111N", "N157D", "N158G", "N159D", "S181T", "D202E", "P210S", "T216S", "V242I", "M243I", "T250S", "P263S", "K265T", "V279I", "G293D", "D294I", "T308S", "Q315R", "K316Q", "K319T", "F325W", "N327-", "-328N", "L341I", "-370S", "V402T", "V414E", "T436E"], "gp41": ["L9I", "I24M", "N96T", "S107N", "N109S", "D129N", "I130T", "N133T", "I135L", "S138A", "S192A", "N212S", "G215D", "D232T", "R259H", "A267V", "I298T", "I301T", "L304V", "I325F", "C326G", "H331N"], "nef": ["I20M", "T23A", "P25A", "E28K", "D38E", "A56V", "H116N", "F143Y", "T157N", "I168M", "R196Q"], "p1": ["S9N"], "p17": ["T72S", "K76R", "R91Q", "D93A", "T115A", "S126K", "K127-"], "p24": ["P92A", "M96I", "G116A", "G225S"], "p6": ["M17F", "S23-", "P25S", "-26Q", "R33G", "Q35L", "P36Y", "V39T"], "p7": ["R7K"], "pro": ["L19Q", "K20R"], "rev": ["R50N", "E57Q", "S86R", "S107P", "I109V"], "tat": ["P3L", "E9D", "A21P", "K29V", "K63Q", "T77A", "V80I"], "vif": ["F39V", "R41K", "K50R", "L64I", "D113N", "R132S", "R158K", "T159I", "V166I", "T170A", "G185E"], "vpr": ["E55A", "V70I", "S96P"], "vpu": ["T2L", "E5H", "C7W", "Y30I", "K32R", "K35R", "L42I", "E44K", "R47S", "E60D", "L61T", "S62D", "T63E", "V65A", "E66K", "M67L", "G68-", "-69V", "-70E", "-71M", "-72G", "-73N", "-74Y", "-75D", "-77G", "-79D"]}, "labels": {"aa": "INT: S39N, I60M, V126F, N134S, I234L; RT-p51: E6D, K11R, V60I, D121Y, S123D, S173K, T200I, Q245M, D250E, A272P, A286T, T294P, D312E, R356K, V376T, T400A; RT-p66: E6D, K11R, V60I, D121Y, S123D, S173K, T200I, Q245M, D250E, A272P, A286T, T294P, D312E, R356K, V376T, T400A, R512K, I526V, S554N; gp120: A3V, D34E, N57H, N71K, -111N, N157D, N158G, N159D, S181T, D202E, P210S, T216S, V242I, M243I, T250S, P263S, K265T, V279I, G293D, D294I, T308S, Q315R, K316Q, K319T, F325W, N327-, -328N, L341I, -370S, V402T, V414E, T436E; gp41: L9I, I24M, N96T, S107N, N109S, D129N, I130T, N133T, I135L, S138A, S192A, N212S, G215D, D232T, R259H, A267V, I298T, I301T, L304V, I325F, C326G, H331N; nef: I20M, T23A, P25A, E28K, D38E, A56V, H116N, F143Y, T157N, I168M, R196Q; p1: S9N; p17: T72S, K76R, R91Q, D93A, T115A, S126K, K127-; p24: P92A, M96I, G116A, G225S; p6: M17F, S23-, P25S, -26Q, R33G, Q35L, P36Y, V39T; p7: R7K; pro: L19Q, K20R; rev: R50N, E57Q, S86R, S107P, I109V; tat: P3L, E9D, A21P, K29V, K63Q, T77A, V80I; vif: F39V, R41K, K50R, L64I, D113N, R132S, R158K, T159I, V166I, T170A, G185E; vpr: E55A, V70I, S96P; vpu: T2L, E5H, C7W, Y30I, K32R, K35R, L42I, E44K, R47S, E60D, L61T, S62D, T63E, V65A, E66K, M67L, G68-, -69V, -70E, -71M, -72G, -73N, -74Y, -75D, -77G, -79D", "clade": "CRF35_A1D"}}, "children": [{"name": "CRF35_A1D_NODE_0000001", "node_attrs": {"div": 0.12738, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["C435T", "G1016A", "A1437G", "G2117A", "C2499G", "A2617C", "A2828G", "C2942A", "G3250A", "A3685G", "G3878C", "C4021T", "C4180T", "A5453T", "-6165G", "-6167A", "-6169T", "-6170G", "-6172C", "-6176A", "-6177A", "-6180C", "G6693A", "A6858G", "-6958T", "T6963A", "A6965-", "A6971G", "-6974A", "-6976C", "A7151G", "C7160G", "A8188G", "A8222C", "C8323T", "T8332A", "C8597A", "C8702T", "T8795G", "G8875A"], "INT": ["E35Q"], "RT-p51": ["V8I", "T135R", "Q174H", "M245V", "L283I"], "RT-p66": ["V8I", "T135R", "Q174H", "M245V", "L283I"], "gp120": ["N335S", "N437S"], "gp41": ["I307L"], "nef": ["F85L", "R178K"], "p2": ["S5G"], "tat": ["Y26F"], "vpu": ["P3S"]}, "labels": {"aa": "INT: E35Q; RT-p51: V8I, T135R, Q174H, M245V, L283I; RT-p66: V8I, T135R, Q174H, M245V, L283I; gp120: N335S, N437S; gp41: I307L; nef: F85L, R178K; p2: S5G; tat: Y26F; vpu: P3S"}}, "children": [{"name": "AB703615", "node_attrs": {"div": 0.15448, "accession": "AB703615", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "IR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10IR.THR41F"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "T396C", "A495G", "T525A", "C539T", "G562A", "A607G", "G612A", "A665G", "C773T", "G791A", "T824C", "T852A", "T983C", "G1077A", "A1089G", "A1090G", "C1115A", "A1134G", "C1172T", "T1244C", "G1302A", "A1340G", "A1350G", "C1385T", "T1628G", "A1691G", "A1700G", "A1759C", "G1764A", "C1775A", "A1793G", "G1794A", "T1796C", "C1828T", "A1854T", "A1894G", "G1963A", "A2056T", "C2071T", "G2134A", "T2694C", "G2830A", "G2847A", "A2881G", "T2968G", "A2995G", "C3056T", "A3116G", "G3127A", "A3202G", "G3205A", "A3221G", "A3224C", "T3225A", "A3247T", "A3292C", "C3391A", "C3449T", "T3497C", "G3502A", "T3530C", "T3644C", "G3679A", "G3816A", "A3866G", "C3908A", "G4060A", "C4141T", "G4176A", "A4178G", "G4555A", "G4689A", "A4736G", "C4820T", "A4904G", "A4951G", "G4968A", "A4988C", "A5059C", "C5102T", "C5125T", "T5197G", "A5227G", "G5267A", "T5286C", "G5299A", "T5319A", "A5355G", "A5426G", "C5432G", 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["I200T", "S251N", "D291E", "P321S", "I341V", "T376A", "M377Q", "E399D", "D432E"], "RT-p66": ["I200T", "S251N", "D291E", "P321S", "I341V", "T376A", "M377Q", "E399D", "D432E", "S468P"], "gp120": ["E4D", "E34D", "E59V", "E64D", "K71N", "-105I", "-106S", "-107I", "-109A", "-112A", "-113N", "-114I", "-115T", "-116N", "-117A", "-118T", "-119D", "-120L", "-121V", "-122K", "-123T", "-124E", "L137I", "K141T", "Q142K", "Q155P", "G158N", "N160S", "S161D", "R164T", "K212G", "Q259H", "E262K", "T265P", "N272G", "A288S", "A291T", "T292D", "D293A", "Q300K", "S308A", "E309D", "K312E", "T319A", "-327N", "G361N", "N364S", "-368F", "N369I", "S370N", "T371G", "-373S", "-374G", "-375E", "-376S", "-377H", "-379K", "-380N", "-381G", "-382T", "-383N", "P389Q", "M398L", "N433V", "N434S", "S437T", "S453N"], "gp41": ["M24V", "K77R", "T96N", "N105S", "E110Q", "D148E", "N160T", "K172R", "M176I", "N195K", "R214G", "G220E", "Q229R", "G230D", "R261S", "L265S", "E272L", "L273K", "L274G", "G275L", "T298I", "L345Q"], 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"CRF35_A1D_NODE_0000002", "node_attrs": {"div": 0.13069999999999998, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["C596T", "C767T", "T992G", "A1112G", "A1350C", "A1418G", "C5251T", "A5545G", "G5652A", "G5739A", "A5907G", "G6133A", "A6192C", "-6199C", "-6202C", "G6464A", "T6482C", "G6605A", "C6807T", "A6875G", "A6981G", "C7087T", "A7241C", "A7275G", "A7470G", "C7597A", "T7912C", "A7929C", "A7964G", "G8254T", "A8744G"], "RT-p66": ["N554S"], "gp120": ["K18R", "T104S", "S210P", "D251N", "R307G", "A318V", "I341V", "-372N", "I463L", "K474R"], "gp41": ["K56R", "H209P", "R221G", "R317S"], "p24": ["H87Q", "G120H"], "p6": ["T39A", "L50S"], "rev": ["K39R"], "tat": ["R57G", "I74L"]}, "labels": {"aa": "RT-p66: N554S; gp120: K18R, T104S, S210P, D251N, R307G, A318V, I341V, -372N, I463L, K474R; gp41: K56R, H209P, R221G, R317S; p24: H87Q, G120H; p6: T39A, L50S; rev: K39R; tat: R57G, I74L"}}, "children": [{"name": "CRF35_A1D_NODE_0000003", "node_attrs": {"div": 0.13312, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G518A", "T549A", "T852A", "A1002G", "G2127A", "A2422G", "T2456C", "G2593A", "T2694C", "A3675G", "A3787G", "T5286C", "G5556A", "C5653T", "G5706T", "-6178T", "-6179G", "-6181C", "A6194G", "-6195G", "-6205C", "-6211C", "G6253A", "C6632T", "G6669A", "G6743A", "A6963G", "-6965A", "-6966C", "-6975A", "G6980A", "A7005G", "C7164G", "G7720A", "A8032G", "T8509C"], "RT-p51": ["R11K", "Y121H", "I200T"], "RT-p66": ["R11K", "Y121H", "I200T", "E527G"], "gp120": ["L260F", "D297N", "-374N", "-377S", "-380T", "-382G", "D384-"], "p17": ["M61I", "S72T"], "p24": ["S41T", "I91V"], "rev": ["R14K", "T62A"], "tat": ["N23S"], "vpr": ["I61T"], "vpu": ["L33F", "-76L"]}, "labels": {"aa": "RT-p51: R11K, Y121H, I200T; RT-p66: R11K, Y121H, I200T, E527G; gp120: L260F, D297N, -374N, -377S, -380T, -382G, D384-; p17: M61I, S72T; p24: S41T, I91V; rev: R14K, T62A; tat: N23S; vpr: I61T; vpu: L33F, -76L"}}, "children": [{"name": "GQ477448", "node_attrs": {"div": 0.15583, "accession": "GQ477448", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "AF"}, "date": {"value": 2007.0}, "Strain_name": {"value": "273H"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A365G", "A412G", "T435A", "C496A", "C506T", "G612A", "G614A", "A632G", "A644G", "A645G", "T718C", "A764G", "A978C", "A989G", "G992A", "A1017T", "A1046C", "A1089C", "C1169T", "G1232A", "C1331T", "C1350T", "T1358C", "A1359T", "A1364G", "T1520C", "A1525G", "T1547C", "C1598T", "A1709G", "A1735G", "T1741C", "A1768C", "G1777A", "G1779-", "A1780-", "G1781-", "A1782C", "A1840C", "A1908C", "C1957T", "A1969G", "A2059G", "A2117G", "G2134A", "A2341G", "T2347C", "G2499C", "A2519G", "C2617A", "T2620C", "A2704G", "T2708C", "G2765A", "T2788C", "T2829A", "A2866C", "A2884G", "G2921A", "A2937G", "C2975A", "G3046A", "A3103G", "C3178T", "G3205A", "A3268T", "G3439A", "G3442A", "C3449T", "G3494A", "G3553A", "T3644A", "G3685A", "G3770A", "C3878G", "A3891G", "C4015T", "T4021C", "T4180C", "T4558C", "A4650C", "C4724T", "G4727A", "A4781G", "G4855A", "T4868C", "G4870A", "A4878T", "C5186A", "T5209C", "C5237T", "T5251C", "A5282T", "G5289A", "A5291T", "T5313C", "G5359A", "T5371G", "G5376A", "T5453A", "C5620T", "A5621C", "A5632G", "A5640G", "A5695G", "T5862C", "A5866C", "G5956C", "A6030C", "T6034C", "A6067C", "G6076A", "T6091C", "A6158G", "C6166T", "A6167C", "T6169C", "G6170-", "C6172-", "C6180T", "A6185T", "C6189A", "C6190A", "C6193A", "-6196G", "C6198G", "-6201A", "C6202T", "-6203G", "-6204T", "-6207C", "-6208C", "-6210G", "-6213T", "-6214A", "-6215A", "-6216C", "-6217A", "-6218G", "-6219G", "-6220G", "A6223C", "G6225A", "T6252C", "A6275C", "A6276G", "T6295C", "T6298C", "C6317A", "T6322G", "T6328A", "G6333A", "A6464G", "C6483T", "A6490G", "G6575A", "A6647G", "T6652C", "A6693G", "A6732G", "C6777T", "A6778G", "A6811C", "A6818C", "-6828G", "-6829G", "A6840C", "T6946C", "-6956G", "-6957A", "-6967T", "-6968T", "-6969G", 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"-120I", "-121T", "-122G", "-123N", "-124E", "M133T", "K141R", "Q155K", "I156M", "P210L", "E241K", "T265A", "H280R", "D293G", "I294D", "G307R", "S308L", "E309D", "K329T", "-368D", "N372W", "-373Y", "-375N", "-376G", "-379S", "-381S", "-383I", "T385-", "R416K", "V418I", "N433H", "N434D", "L463I"], "gp41": ["M24V", "R46K", "H53Q", "T96A", "N107S", "S125N", "T133N", "A151T", "K154Q", "N157S", "D163S", "N166K", "K172R", "I193L", "P211L", "L254R", "G293S", "S317R", "A343V"], "nef": ["I10L", "K28E", "V56T", "E59Q", "K178R", "M182R"], "p17": ["K26R", "L34I", "A54K", "A93T", "I104V", "-127A", "V128-"], "p24": ["I11M", "I96L", "T207S", "T210S"], "p6": ["E19G", "I21T", "Q30P", "G33-"], "p7": ["K20R"], "pro": ["K14N", "N37T"], "rev": ["A68T", "R86C", "E87K", "G111E", "T114V"], "tat": ["F26Y", "Q76*", "P84Q"], "vif": ["N22H", "R90K", "S95N", "I98L"], "vpr": ["H28N", "H45Y", "I60L", "R62K", "I63F", "I70T", "R85Q", "V89G", "D91N"], "vpu": ["L2P", "H5S", "I9V", "I30V"]}, "labels": {"aa": "INT: Q35E, N39S; RT-p51: I8V, R135T, I142V, H174Q, E224K, V245E, V276I, K281R, P294T; RT-p66: I8V, R135T, I142V, H174Q, E224K, V245E, V276I, K281R, P294T, V467I, L517I, S554N, V559I; gp120: V3A, E4D, E34D, E59A, K71N, N102D, -105H, -109V, N111Y, -112K, -113T, -114G, -115S, -116N, -117V, -118T, -119S, -120I, -121T, -122G, -123N, -124E, M133T, K141R, Q155K, I156M, P210L, E241K, T265A, H280R, D293G, I294D, G307R, S308L, E309D, K329T, -368D, N372W, -373Y, -375N, -376G, -379S, -381S, -383I, T385-, R416K, V418I, N433H, N434D, L463I; gp41: M24V, R46K, H53Q, T96A, N107S, S125N, T133N, A151T, K154Q, N157S, D163S, N166K, K172R, I193L, P211L, L254R, G293S, S317R, A343V; nef: I10L, K28E, V56T, E59Q, K178R, M182R; p17: K26R, L34I, A54K, A93T, I104V, -127A, V128-; p24: I11M, I96L, T207S, T210S; p6: E19G, I21T, Q30P, G33-; p7: K20R; pro: K14N, N37T; rev: A68T, R86C, E87K, G111E, T114V; tat: F26Y, Q76*, P84Q; vif: N22H, R90K, S95N, I98L; vpr: H28N, H45Y, I60L, R62K, I63F, I70T, R85Q, V89G, D91N; vpu: L2P, H5S, I9V, I30V"}}}, {"name": "EF158040", "node_attrs": {"div": 0.15858, "accession": "EF158040", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "AF"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05AF094"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A418G", "A461T", "A480G", "A495G", "T525A", "T571A", "T596C", "A628G", "A654C", "T662G", "G686A", "G986A", "C1091T", "A1208G", "A1263T", "A1292C", "G1302A", "C1449A", "A1656C", "T1679C", "T1752C", "A1854T", "A2222C", "T2269C", "T2302C", "A2311G", "C2365A", "A2377C", "A2881G", "T2968A", "G3168A", "T3175C", "A3283G", "G3293A", "T3307C", "G3316A", "G3403A", "C3469A", "G3715A", "A3756G", "G3769A", "T4024C", "G4039A", "C4144T", "A4222G", "G4354A", "G4359C", "A4384G", "A4411G", "T4656C", "A4725C", "G4735A", "T4738C", "A4862G", "T4910C", "T4917C", "A4988C", "C5050A", "G5086A", "G5257A", "A5284T", "A5335G", "T5356C", "C5391T", "A5548T", "A5557G", "G5558A", "G5565A", "C5611A", "T5622A", "G5644A", "C5651T", "A5718G", "A5738G", "T5808G", "A5846T", "G5856A", "C5911T", "G5948A", "C6023T", "G6029A", "G6046T", "C6115T", "A6132C", "A6159C", "-6171T", "-6173A", "-6174A", "-6175C", "C6184T", "A6185G", "A6186C", "C6189G", "C6192A", "C6193T", "-6196C", "C6199T", "A6200T", "-6201T", "-6203A", "-6204A", "-6207A", "-6208T", "-6210T", "-6213C", "-6214T", "-6215G", "-6216T", "-6217C", "-6218A", "-6219A", "-6220C", "A6222T", "G6224A", "G6225C", "A6229T", "A6251G", "A6276C", "C6278A", "G6311A", "A6320C", "G6323A", "G6326A", "G6329A", "T6337C", "A6338T", "G6339A", "G6466T", "A6489G", "A6490C", "A6574C", "T6613A", "G6631T", "C6648T", "C6678G", "A6684T", "A6685T", "T6688A", "A6714G", "C6726G", "G6731A", "A6737G", "A6753G", "C6769T", "A6773G", "T6776G", "C6777A", "G6779C", "A6780G", "A6788G", "C6792T", "C6800A", "T6807C", "A6818G", "-6831G", "-6832G", "-6833A", "-6834A", "-6835A", "T6849A", "T6853C", "A6855C", "T6860C", "A6926G", "C6937T", "A6950G", "T6958-", "A6962G", "-6967C", "-6968A", "-6969A", "-6970T", "G6981T", "G6990T", "C7020A", "A7040G", "A7058G", "C7059T", "A7066G", "T7087C", "A7089C", "A7095T", "A7120C", "G7132A", "A7148C", "T7150G", "A7157G", "A7158G", "T7159G", "G7160A", "A7161G", "G7162T", "C7170T", "C7222T", "A7238C", "C7267T", "G7269A", "C7313A", "G7366A", "C7429T", "G7470A", "A7533G", "C7642T", "C7703T", "T7708A", "A7782G", "G7918A", "C7929T", "A7931G", "A7936G", "A7972C", "A7986G", "G7992A", "A8079G", "T8097C", "T8103C", "C8104A", "A8118G", "G8188A", "A8191G", "C8205T", "G8212A", "C8238G", "T8239G", "C8320T", "T8371A", "T8374G", "G8398A", "G8415A", "A8456T", "C8471T", "A8484-", "T8485-", "A8486-", "-8490G", "-8491T", "-8492G", "A8531C", "G8537C", "G8590C", "T8595A", "T8636A", "T8640C", "A8656G", "A8657G", "A8688C", "A8701T", "A8739G", "T8789G", "C8813T", "A8829T", "A8834G", "T8847A", "G8870T", "C8928T", "A8930C", "C8934A", "T8947A"], "INT": ["S195T", "I203M"], "RT-p51": ["K43Q", "D291E", "R358K", "A400T"], "RT-p66": ["K43Q", "D291E", "R358K", "A400T"], "gp120": ["S1N", "A32T", "H57Y", "E59K", "E64D", "K93T", "N102T", "S104T", "-105V", "-106N", "-107I", "N108T", "-109D", "T110-", "N111-", "M133V", "K141T", "Q142K", "V153I", "I156L", "G158S", "D159N", "N160S", "S162Y", "E204N", "K212S", "E240D", "Q259H", "T265I", "T275R", "K277I", "S278R", "Q287R", "A291G", "D293N", "I295V", "Q300R", "S308E", "E309R", "K312E", "T313I", "Q316K", "V318A", "R322G", "-326K", "-327N", "N328-", "I332N", "N334T", "S336P", "N358D", "T366A", "S370G", "-373G", "-375E", "-376M", "-379I", "-381N", "P389Q", "I396V", "T402V", "Q412P", "E414V", "N432Q", "N433D", "N435G", "E436S", "T439I", "K462Q", "R472K"], "gp41": ["L4I", "R56K", "K77R", "N160S", "P209L", "T210A", "R214G", "E223D", "E228G", "G230D", "H259R", "L265S", "V267A", "E272G", "T301I", "A312G"], "nef": ["I10K", "V11G", "R19K", "A25T", "E38D", "I48V", "V56A", "E63D", "E65D", "G83A", "L85I", "D98E", "K105R", "N116H", "Y120F", "I133V", "D149E", "S163C", "C169S", "E176D", "Q196Y", "L198M", "F202Y"], "p1": ["N9H"], "p17": ["K28R", "E42D", "S49G", "L64I", "F79Y", "K98R", "I107L", "N109K"], "p2": ["T8Q", "-10T", "-11N"], "p24": ["L83M", "H120N", "T178S", "E187D", "V191I", "T207P"], "p6": ["S25P", "L35T"], "pro": ["Q19L"], "rev": ["E11D", "A15T", "R17K", "Y28C", "K30E", "K32R", "R86S", "K115E"], "tat": ["T58S", "S61D", "Q76R"], "vif": ["R50K", "V51A", "Y111H", "E134D", "T155K", "R167K"], "vpr": ["Q77R", "I84T", "P96S"], "vpu": ["L2T", "H5Q", "V13I", "A15V", "K44R", "N80I"]}, "labels": {"aa": "INT: S195T, I203M; RT-p51: K43Q, D291E, R358K, A400T; RT-p66: K43Q, D291E, R358K, A400T; gp120: S1N, A32T, H57Y, E59K, E64D, K93T, N102T, S104T, -105V, -106N, -107I, N108T, -109D, T110-, N111-, M133V, K141T, Q142K, V153I, I156L, G158S, D159N, N160S, S162Y, E204N, K212S, E240D, Q259H, T265I, T275R, K277I, S278R, Q287R, A291G, D293N, I295V, Q300R, S308E, E309R, K312E, T313I, Q316K, V318A, R322G, -326K, -327N, N328-, I332N, N334T, S336P, N358D, T366A, S370G, -373G, -375E, -376M, -379I, -381N, P389Q, I396V, T402V, Q412P, E414V, N432Q, N433D, N435G, E436S, T439I, K462Q, R472K; gp41: L4I, R56K, K77R, N160S, P209L, T210A, R214G, E223D, E228G, G230D, H259R, L265S, V267A, E272G, T301I, A312G; nef: I10K, V11G, R19K, A25T, E38D, I48V, V56A, E63D, E65D, G83A, L85I, D98E, K105R, N116H, Y120F, I133V, D149E, S163C, C169S, E176D, Q196Y, L198M, F202Y; p1: N9H; p17: K28R, E42D, S49G, L64I, F79Y, K98R, I107L, N109K; p2: T8Q, -10T, -11N; p24: L83M, H120N, T178S, E187D, V191I, T207P; p6: S25P, L35T; pro: Q19L; rev: E11D, A15T, R17K, Y28C, K30E, K32R, R86S, K115E; tat: T58S, S61D, Q76R; vif: R50K, V51A, Y111H, E134D, T155K, R167K; vpr: Q77R, I84T, P96S; vpu: L2T, H5Q, V13I, A15V, K44R, N80I"}}}]}, {"name": "CRF35_A1D_NODE_0000004", "node_attrs": {"div": 0.13207999999999998, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G1776A", "A4708G", "G5444A", "T5467A", "G5561A", "-6171T", "C6781A", "A6960T", "T6961C", "C6964T", "C6984T", "A7977G", "A8486G", "A8746T"], "gp120": ["-124G", "E204K", "N334K"], "gp41": ["E225G"], "nef": ["I48M"], "p6": ["G33R"], "rev": ["V16I", "T114A"], "tat": ["C31S", "S62N"], "vif": ["K41R"]}, "labels": {"aa": "gp120: -124G, E204K, N334K; gp41: E225G; nef: I48M; p6: G33R; rev: V16I, T114A; tat: C31S, S62N; vif: K41R"}}, "children": [{"name": "GQ477450", "node_attrs": {"div": 0.15236999999999998, "accession": "GQ477450", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "AF"}, "date": {"value": 2006.0}, "Strain_name": {"value": "007H"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A368G", "A417C", "A480G", "A495G", "C531T", "A705-", "G706-", "C707-", "G709C", "A712G", "-713T", "-714A", "-715A", "A758G", "A815G", "G1005C", "A1090G", "A1106T", "A1230C", "T1262G", "G1328A", "C1351A", "A1452G", "T1583C", "G1794A", "T1797G", "G1846A", "A1900G", "A2038C", "G2127A", "A2210G", "C2211A", "A2212T", "A2344G", "T2393C", "A2470G", "A2524G", "C2584T", "C2615A", "T2829A", "A2839G", "A3027G", "G3065A", "T3132G", "A3192G", "T3219C", "A3221G", "C3223A", "A3229G", "C3252T", "C3359T", "G3385A", "C3394T", "G3442A", "G3556A", "A3622G", "C3649T", "A3675T", "C3754T", "A3756G", "C3908T", "C3970T", "A4027C", "C4042T", "C4144T", "T4177C", "C4475A", "G4774A", "T4799G", "T4826G", "G4864C", "G4913A", "C5056A", "A5090G", "C5102T", "T5160C", "C5237T", "T5260C", "A5395G", "G5436A", "A5447G", "G5448T", "C5469T", "T5483C", "G5545A", "T5679G", "A5695G", "T5704G", "G5711A", "G5730A", "A5738G", "T5781G", "A5816G", "C5833T", "A5848C", "T5851G", "G5963A", "T5964A", "T6026A", "G6044A", "A6067C", "T6085G", "A6164C", "G6165A", "C6166T", "G6170A", "-6173A", "-6174A", "-6175C", "A6177G", "-6178C", "-6179A", "-6181T", "C6189T", "C6190A", "C6193A", "A6194G", "-6195G", "-6196G", "C6198A", "A6200G", "-6201G", "-6203A", "-6204T", "-6205G", "A6206-", "A6209-", "A6212-", "A6221G", "T6244C", "G6268A", "G6323A", "T6328A", "G6333A", "A6450G", "G6526A", "G6532A", "A6628G", "G6631A", "A6659G", "C6660T", "G6669A", "A6685G", "C6769T", "A6773G", "A6809G", "-6828G", "-6829G", "T6856A", "-6956T", "-6957C", "-6975G", "A7089G", "G7106A", "T7117G", "T7150C", "A7152G", "A7154C", "T7156C", "G7160A", "G7162T", "C7164G", "A7225G", "C7313A", "A7373C", "A7463G", "T7604G", "C7605A", "T7606G", "A7636G", "C7678T", "A7705T", "T7757A", "A7763C", "G7790A", "G7831A", "A7936C", "G7943A", "G7956A", "G7980A", "G8019A", "C8047T", "C8092A", "T8097C", "T8100C", "T8103C", "T8164C", "C8205T", "G8304A", "C8320T", "A8329G", "G8373A", "G8375A", "G8409A", "A8424G", "A8455G", "G8476T", "C8499T", "A8519C", "G8550A", "G8588A", "T8595C", "C8705T", "A8739G", "G8795A", "A8812C", "C8813T", "T8835C", "C8934A", "T9019A"], "INT": ["L234I"], "RT-p51": ["R11K", "T39D", "H174N", "V245E", "K311R", "D324N", "F346C", "K366R", "V375A", "T376A", "T386I"], "RT-p66": ["R11K", "T39D", "H174N", "V245E", "K311R", "D324N", "F346C", "K366R", "V375A", "T376A", "T386I", "E527V"], "gp120": ["V37K", "L58M", "E64K", "K71N", "H77Q", "S104H", "-105N", "-106I", "-107N", "N108S", "-109T", "-112I", "-113T", "-114G", "-115N", "-116G", "-117M", "-118E", "D157N", "K199R", "T269V", "T319A", "N369-", "T371I", "-373G", "-374S", "-375E", "-376G", "-377L", "-379S", "-380T", "-381N", "Q412R", "V418I", "I421M", "N433E", "N434G", "E436N"], "gp41": ["L4I", "M24L", "M54V", "S101E", "I111M", "L152M", "K154Q", "D163N", "M176I", "R218K", "G226D", "S239N", "F263L", "L265S", "I266T", "V267A", "T301I", "R334K"], "nef": ["V11I", "A23T", "K28E", "E38G", "S45I", "P51S", "E59D", "V70I", "I133V", "Y135F", "N157T", "L198M"], "p17": ["V7I", "K28Q", "S49G", "P66S", "S124T"], "p2": ["T8Q", "N9H", "-11A", "-12N"], "p24": ["L83M", "A92P", "H120S", "T207Q"], "p6": ["L35M", "A39T", "S40A"], "rev": ["K30Q", "P67S", "H82N", "S106P"], "tat": ["N7D", "K24S", "V36A", "G57R", "Q76P", "G83S"], "vif": ["R63K", "H80Q", "R93T", "T157K", "C192R"], "vpr": ["M19T", "H45Y"], "vpu": ["L2P", "I30V", "L33V", "R35K", "K44R", "D58E", "E70G", "-76F", "N81H", "L82V"]}, "labels": {"aa": "INT: L234I; RT-p51: R11K, T39D, H174N, V245E, K311R, D324N, F346C, K366R, V375A, T376A, T386I; RT-p66: R11K, T39D, H174N, V245E, K311R, D324N, F346C, K366R, V375A, T376A, T386I, E527V; gp120: V37K, L58M, E64K, K71N, H77Q, S104H, -105N, -106I, -107N, N108S, -109T, -112I, -113T, -114G, -115N, -116G, -117M, -118E, D157N, K199R, T269V, T319A, N369-, T371I, -373G, -374S, -375E, -376G, -377L, -379S, -380T, -381N, Q412R, V418I, I421M, N433E, N434G, E436N; gp41: L4I, M24L, M54V, S101E, I111M, L152M, K154Q, D163N, M176I, R218K, G226D, S239N, F263L, L265S, I266T, V267A, T301I, R334K; nef: V11I, A23T, K28E, E38G, S45I, P51S, E59D, V70I, I133V, Y135F, N157T, L198M; p17: V7I, K28Q, S49G, P66S, S124T; p2: T8Q, N9H, -11A, -12N; p24: L83M, A92P, H120S, T207Q; p6: L35M, A39T, S40A; rev: K30Q, P67S, H82N, S106P; tat: N7D, K24S, V36A, G57R, Q76P, G83S; vif: R63K, H80Q, R93T, T157K, C192R; vpr: M19T, H45Y; vpu: L2P, I30V, L33V, R35K, K44R, D58E, E70G, -76F, N81H, L82V"}}}, {"name": "CRF35_A1D_NODE_0000005", "node_attrs": {"div": 0.13354999999999997, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A1089C", "T1796C", "A1969G", "G3205T", "A5481G", "G5482C", "C5612T", "T5614C", "C6183G", "-6208A", "A7589G"], "gp120": ["T110-", "A291T", "S437T"], "gp41": ["T96A"], "p24": ["I96L"], "rev": ["R86H"], "tat": ["V36L"], "vpu": ["S3P"]}, "labels": {"aa": "gp120: T110-, A291T, S437T; gp41: T96A; p24: I96L; rev: R86H; tat: V36L; vpu: S3P"}}, "children": [{"name": "GQ477451", "node_attrs": {"div": 0.15178999999999998, "accession": "GQ477451", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "AF"}, "date": {"value": 2006.0}, "Strain_name": {"value": "027H"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A410G", "T486C", "A491G", "C537T", "A810G", "C823G", "T936C", "A978C", "A1002C", "A1016C", "A1017C", "T1040C", "C1121T", "A1157G", "G1184A", "C1350A", "C1514T", "G1543A", "G1664A", "A1691G", "C1724T", "T1752C", "A1774C", "A1982G", "C1985A", "T2017G", "A2057C", "A2498C", "C2533T", "G2656A", "T2708C", "A2773C", "T2829A", "G2878A", "C2899T", "C2975T", "A3154G", "G3293A", "C3376T", "G3502A", "A3637G", "T3644G", "G3664A", "A3756G", "A3805G", "A3866G", "C4079T", "G4145A", "C4162T", "A4246G", "G4267A", "A4303G", "T4321A", "T4441C", "A4567G", "G4689A", "A4817G", "A4859G", "A4860G", "A4878C", "G4995A", "T5072G", "T5245C", "A5291T", "A5336T", "C5397T", "C5425A", "A5499G", "C5559G", "T5613G", "G5671T", "T5672C", "A5703G", "A5718G", "T5772C", "C5787T", "A5926G", "C5958A", "G5963A", "T5964G", "A6030T", "A6092G", "A6103G", "-6178T", "-6179G", "C6180T", "-6181C", "C6190G", "A6191G", "-6195A", "-6196T", "-6201C", "-6203A", "-6204T", "-6205A", "-6207C", "A6209G", "-6210A", "-6211G", "A6212G", "-6213A", "-6214C", "-6215A", "-6216T", "-6217G", "A6222T", "T6252C", "A6319G", "T6328A", "T6436G", "A6450G", "A6461G", "A6583G", "C6612T", "T6643G", "A6668G", "C6673T", "C6678G", "C6721T", "T6722G", "A6723C", "T6724A", "G6725A", "C6729A", "A6730T", "A6751G", "A6765C", "T6766G", "G6771A", "A6773G", "A6799C", "C6810T", "-6828G", "-6829G", "A6855G", "G6858A", "-6956A", "-6957G", "-6975A", "G6977A", "G6981A", "C6991T", "C7006T", "C7008A", "A7037T", "C7059T", "C7088G", "G7101C", "G7102A", "G7106A", "A7148C", "T7150G", "T7153G", "A7154G", "T7156G", "T7165C", "G7166-", "A7167-", "G7168-", "A7169-", "C7170-", "C7171-", "G7197A", "C7250T", "A7463G", "A7672G", "A7772G", "C7775T", "G7790A", "G7943A", "G7965A", "G7992A", "G8085A", "G8087A", "T8103C", "C8104A", "A8130G", "G8180A", "G8201A", "C8205T", "C8321T", "A8362G", "A8370T", "T8509C", "G8526A", "A8597C", "A8701T", "A8739G", "T8746A", "A8875G", "C8906T", "A8917C", "G8977A"], "INT": ["I31V", "A124T"], "RT-p51": ["V245E", "P294S", "E370D", "A400T"], "RT-p66": ["V245E", "P294S", "E370D", "A400T", "L517V"], "gp120": ["T35K", "V37R", "E59V", "I80V", "N108-", "-112V", "-113N", "-114V", "-115S", "-116N", "-117T", "-118A", "-119M", "-120I", "M133T", "N160S", "K199R", "K203E", "I243M", "A253V", "N272G", "T275R", "T292N", "N304T", "S306N", "R315S", "T319I", "K334S", "S335N", "-368S", "N378-", "T385N", "I395F", "T402I", "Q412E", "R416T", "V418I", "N432Q", "N433E", "N434E", "E438-", "T439-", "R448K"], "gp41": ["M54V", "N157D", "D163N", "G221E", "G230D", "R261K", "D262N", "V267A", "L277S", "G293S", "A300T", "T301I", "L340F"], "nef": ["K7R", "I10L", "V56A", "E62K", "L85F", "Y120F", "I133V", "K178R", "K192T"], "p17": ["A54T", "L68F"], "p24": ["I27V", "A31G", "I91L", "Q95H"], "p6": ["S25P", "D32A", "L35M"], "p7": ["R26K"], "pro": ["I62V", "L63I"], "rev": ["A15G", "R80K", "H86S", "G111E"], "tat": ["Q17K", "S61R", "E86K"], "vif": ["A35T", "K92E", "I98L", "A137T"], "vpr": ["I63F", "Q77H"], "vpu": ["L4P", "H5L", "V22S", "-76L"]}, "labels": {"aa": "INT: I31V, A124T; RT-p51: V245E, P294S, E370D, A400T; RT-p66: V245E, P294S, E370D, A400T, L517V; gp120: T35K, V37R, E59V, I80V, N108-, -112V, -113N, -114V, -115S, -116N, -117T, -118A, -119M, -120I, M133T, N160S, K199R, K203E, I243M, A253V, N272G, T275R, T292N, N304T, S306N, R315S, T319I, K334S, S335N, -368S, N378-, T385N, I395F, T402I, Q412E, R416T, V418I, N432Q, N433E, N434E, E438-, T439-, R448K; gp41: M54V, N157D, D163N, G221E, G230D, R261K, D262N, V267A, L277S, G293S, A300T, T301I, L340F; nef: K7R, I10L, V56A, E62K, L85F, Y120F, I133V, K178R, K192T; p17: A54T, L68F; p24: I27V, A31G, I91L, Q95H; p6: S25P, D32A, L35M; p7: R26K; pro: I62V, L63I; rev: A15G, R80K, H86S, G111E; tat: Q17K, S61R, E86K; vif: A35T, K92E, I98L, A137T; vpr: I63F, Q77H; vpu: L4P, H5L, V22S, -76L"}}}, {"name": "CRF35_A1D_NODE_0000006", "node_attrs": {"div": 0.13504999999999998, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["T662G", "G1777A", "C3222G", "G4735A", "G5461A", "T5462A", "G5463A", "T5793A", "-6173A", "G6327A", "G6329A", "A6686-", "G6687-", "A6689-", "A6691-", "A6780C", "A6974-", "A7000-", "A7001-", "A7002-"], "RT-p51": ["T376S"], "RT-p66": ["T376S"], "gp120": ["D157G", "E309A"], "nef": ["Y135F"], "p17": ["N109K"], "vif": ["R50K"], "vpu": ["N73-"]}, "labels": {"aa": "RT-p51: T376S; RT-p66: T376S; gp120: D157G, E309A; nef: Y135F; p17: N109K; vif: R50K; vpu: N73-"}}, "children": [{"name": "AB703612", "node_attrs": {"div": 0.16341999999999998, "accession": "AB703612", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "IR"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11IR.KSH31F"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "G395A", "G413T", "A418G", "C426T", "A495T", "A497G", "C613T", "A653G", "A665C", "C672A", "C691T", "-713G", "-714G", "-715T", "G716C", "A759C", "T760C", "A762G", "G791A", "G803A", "A818G", "C827T", "A978T", "G986A", "A1002G", "A1017T", "A1093C", "C1094T", "T1100C", "G1173A", "T1174C", "C1350G", "A1359T", "A1361G", "C1449A", "A1452G", "C1453T", "A1644T", "C1706A", "T1741C", "G1745A", "A1782C", "T1790C", "C1828T", "G1858A", "G1963A", "T2080G", "G2127A", "T2129C", "A2170G", "A2260G", "A2317G", "A2614G", "G2683A", "C2715A", "A2722G", "T2776C", "A2840C", "A2881G", "A2896C", "A2951T", "C3013T", "A3031G", "T3049C", "T3205A", "A3283G", "T3303C", "G3398A", "G3439A", "G3463A", "G3502A", "C3550T", "G3664A", "A3667C", "G3671A", "G3674A", "G3715A", "T3793G", "A3808G", "A3835G", "T3844G", "G3869A", "C3878G", "A3891G", "T4021C", "A4036G", "A4087G", "A4108G", "C4129T", "T4234C", "G4243A", "G4467A", "A4564G", "G4573A", "G4708A", "G4749A", "G4786A", "C4820A", "C4890G", "T4910C", "C4939T", "A4951G", "A4958T", "G5030A", "A5069C", "A5090G", "C5091T", "A5122C", "G5123A", "C5248T", "A5360G", "T5384C", "T5430C", "C5551T", "A5665G", "G5711A", "A5720G", "T5727A", "G5784A", "G5791T", "A5792C", "G5794A", "T5797C", "G5799T", "C5801T", "A5802G", "A5803G", "A5805G", "C5806A", "T5808G", "-5809G", "-5810G", "-5811G", "G5812-", "T5813-", "G5814-", "G5815-", "A5816-", "G5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "T5862C", "T5944C", "C6004T", "C6010A", "A6030C", "C6039T", "G6044A", "G6046T", "A6065C", "A6066C", "C6109T", "T6151C", "T6171C", "-6174A", "-6175C", "A6177C", "-6178A", "-6179A", "-6181A", "A6182G", "C6187T", "A6188G", "C6189T", "C6192A", "-6195T", "-6196A", "C6199A", "A6200G", "-6201G", "C6202G", "-6203G", "-6204A", "-6205C", "-6207A", "A6208C", "-6210T", "-6211G", "A6212-", "A6223T", "A6275C", "C6278A", "T6285A", "A6288C", "A6316G", "A6324G", "T6325A", "G6326A", "A6330G", "A6335-", "G6336-", "T6337-", "G6425A", "A6443C", "A6465C", "C6496T", "A6525G", "G6533A", "T6556C", "C6618T", "G6631T", "G6638A", "T6658C", "A6668G", "C6673T", "T6688-", "T6690-", "C6692G", "A6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6719A", "G6725A", "G6731A", "A6781C", "A6790C", "T6793C", "G6802A", "A6809G", "A6820G", "-6828G", "-6829G", "A6839G", "A6840G", "T6856G", "-6956C", "-6957C", "-6965G", "-6966G", "-6967T", "-6968A", "-6969G", "-6970C", "G6971A", "C6976-", "T6983A", "T6984A", "-6994A", "-6995G", "-6996A", "T7022C", "A7036G", "C7088A", "G7102A", "C7124A", "A7148G", "T7150G", "A7152G", "T7153G", "T7159C", "G7160C", "A7161G", "T7165C", "A7238G", "G7269A", "G7275A", "A7339G", "T7462G", "T7464C", "A7505C", "A7617G", "C7642T", "C7692T", "A7714T", "G7720A", "A7772G", "A7800G", "C7801A", "A7818G", "A7834C", "T7888A", "C7929T", "C7932T", "A7936G", "G7977A", "A8076G", "A8093G", "G8105A", "G8158A", "G8184A", "C8189T", "A8208G", "C8222A", "T8254G", "C8320T", "A8327G", "G8402A", "A8405G", "A8425G", "C8437A", "C8477T", "A8519C", "A8531C", "G8590C", "A8597T", "A8662G", "C8699T", "T8702C", "A8726G", "G8744A", "T8747C", "A8770T", "G8795A", "C8849T", "A8859G", "A8915G", "T8972A", "T8993G"], "INT": ["D6E", "V32I", "Q35E", "N39S", "R231K"], "RT-p51": ["R11K", "K249Q", "T286S", "M403T", "V435I"], "RT-p66": ["R11K", "K249Q", "T286S", "M403T", "V435I", "K524N", "V526I", "E527K", "S554N"], "gp120": ["V3A", "N52K", "E59A", "T62I", "E64N", "K71P", "S104T", "-105G", "-106N", "-107V", "-109I", "-110T", "N111G", "-112D", "-113N", "-114M", "-115N", "K141Q", "Q142K", "V144E", "Y145S", "G158N", "D159S", "N160S", "S161-", "A191T", "I197L", "K204T", "K224R", "V227I", "T255I", "Q259H", "E262K", "N272G", "S278G", "F289I", "D293N", "G307R", "K312N", "T319A", "K329G", "-368P", "N372D", "N378-", "C390R", "Q412K", "L424I", "N432E", "N433G", "E436R", "K462E", "R472K", "R474K"], "gp41": ["H53Q", "M54T", "N105S", "T130I", "E137D", "N157D", "N166R", "K172R", "N195K", "P209L", "T210I", "R214G", "G225E", "H258R", "I264V", "A268T", "R294Q", "N302S", "L307I", "S317R", "R342G"], "nef": ["M20I", "K28R", "A32E", "E59D", "E63D", "G83A", "L85F", "Q107R", "Y143F", "M173V"], "p1": ["I5F"], "p17": ["K18R", "K26N", "K28R", "A54S", "A93V", "K110N", "Q113K", "A119V", "-127V"], "p2": ["T8Q", "-10V", "-11N"], "p24": ["M10P", "I11V", "I91V", "N121T", "V148T", "T207A", "T210S"], "p6": ["I21T", "R33K", "S50L"], "rev": ["K30E", "K32R", "V104M", "A114V"], "tat": ["L3P", "P59S", "P75S", "Q76R"], "vif": ["R41K", "V55I", "R67K", "D78E", "L102V", "S118F", "K122R", "K179T"], "vpr": ["E6D", "D7N"], "vpu": ["I20V", "R35K", "K38R", "D40E", "D60E", "T61L", "D62S", "E63K", "A65V", "K66E", "L67M", "-68G", "V69N", "E70Y", "M71D", "G72L", "-73G", "Y74-", "D75-", "G77-"]}, "labels": {"aa": "INT: D6E, V32I, Q35E, N39S, R231K; RT-p51: R11K, K249Q, T286S, M403T, V435I; RT-p66: R11K, K249Q, T286S, M403T, V435I, K524N, V526I, E527K, S554N; gp120: V3A, N52K, E59A, T62I, E64N, K71P, S104T, -105G, -106N, -107V, -109I, -110T, N111G, -112D, -113N, -114M, -115N, K141Q, Q142K, V144E, Y145S, G158N, D159S, N160S, S161-, A191T, I197L, K204T, K224R, V227I, T255I, Q259H, E262K, N272G, S278G, F289I, D293N, G307R, K312N, T319A, K329G, -368P, N372D, N378-, C390R, Q412K, L424I, N432E, N433G, E436R, K462E, R472K, R474K; gp41: H53Q, M54T, N105S, T130I, E137D, N157D, N166R, K172R, N195K, P209L, T210I, R214G, G225E, H258R, I264V, A268T, R294Q, N302S, L307I, S317R, R342G; nef: M20I, K28R, A32E, E59D, E63D, G83A, L85F, Q107R, Y143F, M173V; p1: I5F; p17: K18R, K26N, K28R, A54S, A93V, K110N, Q113K, A119V, -127V; p2: T8Q, -10V, -11N; p24: M10P, I11V, I91V, N121T, V148T, T207A, T210S; p6: I21T, R33K, S50L; rev: K30E, K32R, V104M, A114V; tat: L3P, P59S, P75S, Q76R; vif: R41K, V55I, R67K, D78E, L102V, S118F, K122R, K179T; vpr: E6D, D7N; vpu: I20V, R35K, K38R, D40E, D60E, T61L, D62S, E63K, A65V, K66E, L67M, -68G, V69N, E70Y, M71D, G72L, -73G, Y74-, D75-, G77-"}}}, {"name": "CRF35_A1D_NODE_0000007", "node_attrs": {"div": 0.13832999999999998, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A619G", "T983C", "G992T", "T2968G", "A3675G", "A4175G", "T4543C", "G4701T", "G5299A", "G5448A", "G5702A", "A5718G", "C6023A", "G6029A", "-6217G", "A6797G", "-6831G", "-6832G", "-6833A", "-6834A", "-6835C", "C6838A", "A6840C", "G6990A", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "A7315G", "G7440A", "A7533G", "G7640A", "A7688G", "G7712A", "A8407G", "A8688C", "A8812C", "C8813T"], "INT": ["S134G"], "RT-p51": ["D291E", "E370D"], "RT-p66": ["D291E", "E370D", "E527G"], "gp120": ["E34D", "H57N", "R315G", "-327N", "N328K", "K329T", "-373G", "-376G", "-379N", "D384-", "T385-"], "gp41": ["R46K", "R74S", "K77R", "D113N", "N129D"], "nef": ["Q22R", "N116H", "N157T"], "p24": ["T207P"], "tat": ["V29K"], "vpu": ["R32K", "N81D"]}, "labels": {"aa": "INT: S134G; RT-p51: D291E, E370D; RT-p66: D291E, E370D, E527G; gp120: E34D, H57N, R315G, -327N, N328K, K329T, -373G, -376G, -379N, D384-, T385-; gp41: R46K, R74S, K77R, D113N, N129D; nef: Q22R, N116H, N157T; p24: T207P; tat: V29K; vpu: R32K, N81D"}}, "children": [{"name": "GQ477445", "node_attrs": {"div": 0.16329, "accession": "GQ477445", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "AF"}, "date": {"value": 2006.0}, "Strain_name": {"value": "073H"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "G367A", "A417C", "C426T", "G562A", "G612A", "G615A", "A683G", "T852A", "T892C", "A903G", "A968C", "A978C", "G986A", "A1007G", "A1017C", "G1031A", "A1074G", "T1100C", "G1388A", "A1404G", "T1422C", "T1451G", "G1498A", "A1529T", "C1571A", "A1606G", "T1676C", "T1682C", "G1784A", "T1868C", "G2128A", "T2369C", "A2419G", "T2456G", "G2593A", "G2682A", "G2683A", "G2710A", "A2743C", "G2833A", "A2925G", "G2932A", "A2938G", "A2969G", "C2975A", "A3165G", "G3166A", "A3193G", "G3211A", "C3252T", "G3385A", "C3415T", "G3442A", "T3505C", "A3511T", "T3551C", "G3617A", "C3763T", "G3766A", "A3866G", "C3995T", "A4178G", "T4198A", "G4244A", "A4644G", "A4692C", "A4722T", "G4727A", "T4738G", "C4757T", "A4816G", "T4832G", "T4910C", "A5021G", "T5311C", "A5336C", "A5360G", "T5384C", "C5391T", "A5402C", "A5444G", "A5467T", "T5483A", "C5536T", "A5537C", "G5545C", "G5546A", "A5548C", "A5555G", "G5556A", "A5560G", "A5576G", "C5578A", "C5585A", "T5617C", "G5619T", "G5692C", "G5717A", "G5730A", "A5739T", "T5778C", "A5788-", "C5789-", "A5790-", "G5791T", "A5792C", "A5796G", "T5797G", "T5798A", "G5799A", "G5800T", "C5801T", "A5802G", "A5803G", "A5804C", "C5806A", "T5807A", "T5808A", "-5809C", "-5810T", "-5811T", "T5851G", "G5861A", "T5862C", "G5864A", "G5907A", "C5911T", "T5929C", "G5956C", "G6076A", "A6158G", "T6160G", "-6174A", "-6175C", "-6178A", "-6179A", "-6181G", "C6190A", "C6193A", "-6195G", "-6196C", "A6197C", "-6201A", "-6203A", "-6204T", "-6205A", "-6207C", "A6209G", "-6210A", "-6211T", "-6213G", "-6214C", "-6215A", "-6216T", "A6222T", "A6251G", "A6276C", "T6287C", "T6322A", "G6326A", "C6559T", "A6571G", "G6577A", "T6590A", "C6632T", "A6647T", "G6669A", "T6688-", "T6690-", "C6692G", "A6693G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6717T", "A6728G", "A6732G", "A6773G", "A6775C", "A6855G", "G6871A", "-6956A", "-6957G", "-6974A", "-6975G", "G6977C", "T6983A", "A6992G", "C6993A", "-6994T", "T7003-", "A7037T", "C7064A", "T7107A", "A7152G", "T7153C", "A7155G", "A7157C", "T7159G", "G7162T", "C7164A", "A7268G", "G7275A", "A7373G", "C7411T", "G7441A", "G7517C", "A7525T", "A7597C", "G7629C", "C7690A", "A7714T", "C7723T", "G7754A", "G7759A", "A7763C", "G7790A", "A7791G", "A7818G", "C7929T", "G7943A", "T7948A", "C8044G", "G8050C", "A8079G", "C8080A", "A8093G", "G8105A", "A8143G", "C8189T", "A8208G", "T8209C", "T8210C", "G8213A", "A8236G", "T8276A", "G8285-", "C8286-", "T8287-", "A8288-", "T8289-", "T8290-", "C8291-", "T8292-", "C8293-", "A8294-", "A8295-", "C8296-", "A8297-", "T8298-", "A8299-", "C8300-", "C8301-", "T8302-", "A8303-", "G8304-", "A8305-", "C8321T", "G8349A", "A8405G", "C8412G", "T8414A", "G8436A", "C8504T", "G8508A", "T8509C", "A8531C", "A8558T", "A8580G", "C8581A", "A8584T", "T8594G", "T8595G", "T8640C", "T8740C", "G8744A", "T8747C", "A8770T", "C8809A", "A8859G", "C8992A", "T8993C", "G9033A"], "INT": ["I31V", "I135V", "E157K"], "RT-p51": ["Y121D", "G196E", "K277R", "I292V", "P294T", "K357R", "T386I"], "RT-p66": ["Y121D", "G196E", "K277R", "I292V", "P294T", "K357R", "T386I", "A508T", "S554N"], "gp120": ["V3T", 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["S8R", "E10D", "E11N", "R14E", "I21V", "Q24K", "S34T", "R66G", "A68P", "L78I", "H82R", "R99G", "A114V"], "tat": ["L3P", "D9A", "N23S", "S31C", "L36H", "Q54S", "G57Q", "T58P", "Q60R", "N62D", "N67S", "P68T", "P70Q", "I80N"], "vif": ["T20A", "K36Q", "V39F", "S46C", "V51G", "K77R"], "vpr": ["Q77H", "P96S"], "vpu": ["H5L", "E29Q", "R37K", "K44N", "D60E", "T61L", "D62A", "E63K", "A65V", "K66E", "L67M", "-68G", "V69N", "E70Y", "M71-", "G72-", "Y74-", "D75-", "G77-", "D78-", "D79-", "N80-"]}, "labels": {"aa": "INT: I31V, I135V, E157K; RT-p51: Y121D, G196E, K277R, I292V, P294T, K357R, T386I; RT-p66: Y121D, G196E, K277R, I292V, P294T, K357R, T386I, A508T, S554N; gp120: V3T, E4K, R18K, E59K, N102E, -105N, -106V, -107N, N108K, -109T, -110S, -112T, -113T, -114S, -115P, -116N, -117I, -118T, -119D, -120S, -121M, -122I, M133V, K141T, Y145H, S161N, S246T, L260F, T265S, S278G, A288V, T291A, T292A, D293G, I294D, K334S, N369-, T371I, -374S, -375Q, -377I, -380D, I395F, Q404K, V418E, N433D, N435G, E436S, 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{"value": "10IR.THR01F"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["T435A", "A495G", "A520C", "T525A", "C531T", "T567C", "T571A", "G614A", "A618G", "A645G", "C668T", "G678A", "-713T", "G716-", "C897T", "T944C", "A991C", "C1089A", "A1090G", "A1157C", "A1359T", "C1449A", "A1450G", "A1544G", "A1568G", "T1574C", "A1642G", "A1656C", "T1730C", "A1782C", "T1790C", "G1963A", "G2128T", "C2211T", "A2461G", "G2499T", "G2507C", "C2615A", "A2626C", "A2630G", "T2694C", "A2698G", "T2806C", "A2836G", "A2881G", "T2890C", "T2908C", "C2978T", "C3067T", "T3118A", "T3132A", "A3192G", "A3249G", "G3671A", "A3756G", "C3878G", "T3962C", "A4222G", "A4384G", "C4501T", "T4537C", "T4703A", "C4715T", "C4728A", "C4731T", "A4861G", "C4871T", "T4916C", "A4988C", "T5003C", "A5005G", "G5143A", "G5267A", "T5313C", "C5339T", "A5395G", "C5398A", "A5426G", "T5439C", "C5469T", "C5482A", "A5537G", "C5559T", "T5582A", "T5636C", "A5703G", "T5704A", "G5706T", "G5711A", "T5748A", "A5793G", 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"L36I", "Q54R", "I69K"], "vif": ["V39L", "H48N", "P49S", "K92R", "E134D", "N140S", "S186N"], "vpr": ["A55T", "I70T"], "vpu": ["V10A", "L33I", "R35K", "S47R", "D62E", "-73Y", "-76L"]}, "labels": {"aa": "INT: Q35E, I203M; RT-p51: R11S, T39I, R135I, E138Q, H174N, E177D, I179V, I200T, F346Y, K366R, K385R; RT-p66: R11S, T39I, R135I, E138Q, H174N, E177D, I179V, I200T, F346Y, K366R, K385R, V526I; gp120: E4D, T35P, I56V, E59T, -105D, -106A, -107R, N108T, N111-, I126V, S130T, L137I, G157E, G158E, D159N, A172V, A191T, N201K, E202D, K203N, E240G, I243M, N251D, T255I, S263T, N272S, I281M, T292E, G307K, H324L, S335N, S336H, V341I, G361D, N364S, -368N, N369I, S370N, T371G, N372S, -377L, -380T, -381D, -382G, -383N, I396V, N397R, E414S, R416T, N432D, N434Q, N435T, R448K, R472P, E479Q; gp41: V7M, H53Q, T128S, E137I, N157S, R214G, Y284H, V304L, L307I, S317G, F325L; nef: A23T, A25T, K28E, E65D, Q107A, E108D, I133E, N162T, C169S, M182R, K192T, Q196R, L198Q; p1: K4R, N9H; p17: L34I, E62A, L64I, P66S, F79Y, K95G, I104V, A115T, K126N; p2: T8Q, N9-, -10S, -11T, -12N; p24: L83M, Q87P, L96I, H120S, T210S; rev: S8G, Y23N, K32R, H86C, V102A; tat: N7D, L8I, Q17R, L36I, Q54R, I69K; vif: V39L, H48N, P49S, K92R, E134D, N140S, S186N; vpr: A55T, I70T; vpu: V10A, L33I, R35K, S47R, D62E, -73Y, -76L"}}}]}]}]}]}]}]}, {"name": "CRF35_A1D_NODE_0000008", "node_attrs": {"div": 0.12377999999999999, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "C845T", "A3020C", "G3770A", "C5237T", "A6573G", "A7158G"], "RT-p51": ["I309L"], "RT-p66": ["I309L", "V559I"], "gp120": ["E240G", "Q412R"], "p17": ["V7I", "A54T"], "vpr": ["H45Y"]}, "labels": {"aa": "RT-p51: I309L; RT-p66: I309L, V559I; gp120: E240G, Q412R; p17: V7I, A54T; vpr: H45Y"}}, "children": [{"name": "CRF35_A1D_NODE_0000009", "node_attrs": {"div": 0.12622, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["T1174C", "G1794A", "A2241G", "T2494C", "A2881G", "A3265G", "A3787G", "A4333G", "G5556A", "T5793-", "A6024C", "-6205G", "-6210T", "A6668G", "-6831G", "-6832G", "-6833A", "-6834A", "-6835C", "C6838A", "A6840C", "A6855G", "C6984T", "A7148G", "A7154G", "T7156G", "C7164A", "G7943A", "A8617G", "A8701T", "A8844C", "A8917G"], "RT-p51": ["K49R"], "RT-p66": ["K49R"], "gp120": ["H57P", "N272G", "I294D", "E309D", "-327N", "K329T", "N435S", "E436Q"], "nef": ["K92R", "Y120F", "M168L", "K192R"], "p24": ["L83M"]}, "labels": {"aa": "RT-p51: K49R; RT-p66: K49R; gp120: H57P, N272G, I294D, E309D, -327N, K329T, N435S, E436Q; nef: K92R, Y120F, M168L, K192R; p24: L83M"}}, "children": [{"name": "EF158043", "node_attrs": {"div": 0.14679, "accession": "EF158043", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "AF"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05AF026"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G367A", "G386A", "A388G", "G438A", "C471G", "A512G", "C613G", "A653G", "A677G", "G908A", "G956A", "A1089G", "A1090G", "C1118T", "G1173T", "T1244C", "A1292C", "G1302A", "G1339A", "A1486G", "G1745A", "A1772G", "A1774G", "C1775G", "A1782C", "T1791G", "C1828T", "A1839G", "A2210C", "C2211T", "G2380A", "A2422G", "A2579T", "A2617C", "T2779G", "G2902A", "A2962G", "G3173A", "A3192G", "A3200G", "C3201T", "C3222G", "G3250A", "G3385A", "G3477A", "A3665G", "A3675G", "C3688T", "C3857A", "G3859A", "G3869A", "A3910G", "G4186A", "A4225C", "A4384G", "A4433G", "T4441A", "A4494G", "C4501T", "C4534T", "A4570C", "G4677A", "G4701T", "A4708G", "G4774A", "C4800T", "C4820T", "T4826G", "C4937A", "A4956C", "T5043G", "T5263C", "C5294T", "G5305A", "T5313C", "A5447C", "G5461A", "T5462A", "T5483C", "A5581C", "C5611A", "C5620T", "T5669C", "T5679C", "A5699G", "A5703T", "T5704C", "T5748G", "G5791-", "A5792-", "G5794-", "A5795-", "A5796-", "T5797-", "T5798-", "G5799-", "C5801A", "A5802T", "A5803G", "A5805G", "C5806T", "T5808G", "-5809G", "-5810C", "-5811A", "G6029A", "A6031G", "T6100C", "C6148T", "T6154C", "-6165G", "A6168-", "-6176A", "-6177A", "-6178T", "-6179G", "-6180C", "-6181C", "C6183A", "A6186T", "C6187A", "C6190A", "-6195C", "-6196T", "A6197G", "-6199C", "-6201G", "-6202C", "-6203A", "-6204T", "-6207C", "-6208G", "A6209G", "-6211G", "-6213A", "-6214C", "-6215A", "-6216T", "-6217G", "A6222C", "G6225A", "A6262G", "A6276G", "A6277C", "C6278A", "T6289C", "A6303G", "C6317T", "A6318C", "G6333A", "A6376C", "G6460T", "G6463A", "G6466A", "A6489C", "C6548T", "T6641A", "G6693A", "A6732G", "C6792A", "T6793C", "C6807T", "A6837G", "A6858G", "-6966A", "-6967T", "-6968G", "-6969G", "-6970C", "A6978G", "A6981G", "A6985T", "C7008A", "T7009C", "C7024T", "C7088A", "A7149G", "A7155C", "A7268G", "C7336T", "A7348C", "A7373G", "A7396G", "A7463G", "A7470G", "A7471G", "A7589G", "A7623G", "C7658G", "C7678T", "C7801A", "A7883G", "C7926T", "G7992A", "A8023G", "C8047T", "C8051A", "C8056A", "C8077T", "C8092A", "C8104T", "G8133A", "C8167T", "A8258C", "T8265C", "C8321T", "A8325G", "A8327-", "G8328-", "A8329-", "A8432G", "G8436A", "A8455G", "A8458C", "A8461G", "G8532A", "A8533G", "G8534T", "G8537A", "A8549G", "G8793A", "A8794C", "C8831T", "A8852G", "A8879G", "G8923T", "C8934A", "T8947A", "G8955A", "C8966A", "C8975T", "G8977A"], "INT": ["L28I", "V32I", "I203M", "I220V", "N222K", "K240R"], "RT-p51": ["T39L", "S162C", "Q174H", "A360T", "K366R", "T369V", "T376S"], "RT-p66": ["T39L", "S162C", "Q174H", "A360T", "K366R", "T369V", "T376S", "R461K", "K524E", "E527G"], "gp120": ["E59K", "T104S", "-105N", "-106A", "-109I", "-112T", "-113A", "-114S", "-115M", "-116T", "-117V", "-118N", "-119M", "-120T", "-121E", "-122E", "E125-", "K141S", "Q142K", "K150R", "Q155S", "R164G", "L165N", "I166S", "N167S", "E202D", "K212T", "S263T", "D293G", "T313N", "A318V", "N328R", "N334S", "N335S", "-368F", "-372N", "N378-", "T385N", "R412K", "N432G", "N434A", "R472G"], "gp41": ["M24V", "M54V", "K56R", "T96A", "N107S", "Q119E", "N166K", "I194V", "T208I", "G230D", "S251R", "F263L", "I319L", "I321T", "L340F", "E341G", "R342A", "A343-"], "nef": ["A32T", "E38G", "K39T", "H40R", "E64S", "E151T", "R194I", "L198M", "F202Y", "D205N"], "p17": ["G11E", "K18R", "V35I", "L46V", "A93G"], "p24": ["V148S", "E187D", "V191I", "R203K"], "p6": ["D32G", "L38V"], "p7": ["K7R"], "pro": ["K14R"], "rev": ["R14K", "I59V", "P67S", "A68E", "P70T", "P77S", "H82N", "R86C", "P107S"], "tat": ["N23S", "K24T", "V29K", "V36A", "I69L", "P73S"], "vif": ["V31I", "V39F", "K41R", "R63K", "H80Q", "D117E", "I124L", "L153V"], "vpr": ["I70T"], "vpu": ["L2T", "P3S", "H5Y", "V21A", "K31R", "R32S", "S47R", "-76L"]}, "labels": {"aa": "INT: L28I, V32I, I203M, I220V, N222K, K240R; RT-p51: T39L, S162C, Q174H, A360T, K366R, T369V, T376S; RT-p66: T39L, S162C, Q174H, A360T, K366R, T369V, T376S, R461K, K524E, E527G; gp120: E59K, T104S, -105N, -106A, -109I, -112T, -113A, -114S, -115M, -116T, -117V, -118N, -119M, -120T, -121E, -122E, E125-, K141S, Q142K, K150R, Q155S, R164G, L165N, I166S, N167S, E202D, K212T, S263T, D293G, T313N, A318V, N328R, N334S, N335S, -368F, -372N, N378-, T385N, R412K, N432G, N434A, R472G; gp41: M24V, M54V, K56R, T96A, N107S, Q119E, N166K, I194V, T208I, G230D, S251R, F263L, I319L, I321T, L340F, E341G, R342A, A343-; nef: A32T, E38G, K39T, H40R, E64S, E151T, R194I, L198M, F202Y, D205N; p17: G11E, K18R, V35I, L46V, A93G; p24: V148S, E187D, V191I, R203K; p6: D32G, L38V; p7: K7R; pro: K14R; rev: R14K, I59V, P67S, A68E, P70T, P77S, H82N, R86C, P107S; tat: N23S, K24T, V29K, V36A, I69L, P73S; vif: V31I, V39F, K41R, R63K, H80Q, D117E, I124L, L153V; vpr: I70T; vpu: L2T, P3S, H5Y, V21A, K31R, R32S, S47R, -76L"}}}, {"name": "GQ477443", "node_attrs": {"div": 0.15031, "accession": "GQ477443", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "AF"}, "date": {"value": 2006.0}, "Strain_name": {"value": "047H"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A425G", "G518A", "A527G", "T549A", "C606A", "C613A", "A617G", "G650A", "G678A", "-713C", "-714A", "-715A", "C765T", "C767T", "T774A", "A941G", "C947A", "C950A", "G998A", "A1074G", "A1076G", "G1139A", "A1361C", "C1406T", "T1444C", "A1525G", "C1721T", "A1735G", "C1749T", "G1766A", "A1771G", "T1791C", "C1825A", "C1828A", "A2007G", "T2024C", "A2059G", "G2134A", "C2263T", "T2356C", "T2369C", "A2400G", "C2499T", "A2548G", "A2626G", "T2632C", "A2677G", "A2693C", "G2710A", "A2764G", "A2818G", "C2857T", "A2887G", "A2915G", "A2956G", "T2968A", "A2969G", "A3097G", "C3100A", "T3225C", "G3226A", "G3293A", "A3565C", "A3640G", "A3643G", "C3653T", "A3654T", "G3664A", "C3691T", "A3697C", "G3715A", "G3718A", "A3760T", "A3808C", "G3816A", "G3834A", "A3891G", "A4036G", "G4057A", "G4131C", "T4135C", "C4138T", "C4141T", "G4464A", "G4541A", "T4674C", "G4689A", "G4838A", "T4858G", "A4859G", "A4865C", "A4878C", "A4956G", "A5055G", "C5171T", "T5286C", "C5327T", "A5335G", "T5384C", "G5418A", "G5444A", "G5482A", "T5483G", "G5546A", "A5555C", "A5557G", "G5558A", "G5561C", "G5565A", "A5587G", "C5612T", "T5614C", "T5622C", "C5658T", "G5668A", "T5672C", "G5673A", "C5707T", "G5730A", "G5784C", "C5787T", "A5790T", "-5793A", "C5826T", "G5839A", "G5858A", "T5862C", "C5958A", "A5962G", "C6109T", "A6159C", "-6165A", "C6166T", "-6167A", "-6169C", "-6170A", "-6171T", "-6172A", "C6184A", "A6185C", "A6188C", "-6195G", "-6196A", "A6200-", "-6204G", "-6207G", "-6208A", "-6211A", "-6213C", "-6214A", "-6219T", "-6220G", "T6252C", "A6281G", "T6285C", "T6328A", "G6329A", "A6330C", "G6336A", "T6340G", "A6490C", "G6577A", "A6578G", "C6603T", "A6734G", "T6735A", "A6736T", "G6741T", "G6742A", "G6798A", "G6802A", "A6837C", "T6856G", "A6926G", "-6956A", "-6957A", "-6958T", "A6960T", "T6961C", "T6963G", "C6964T", "A6965-", "A6971G", "-6974A", "-6975G", "-6976C", "C7008T", "T7009A", "A7046C", "G7048A", "C7059T", "A7063G", "A7089G", "C7099T", "T7107A", "A7113G", "A7149T", "A7155G", "G7168A", "A7208C", "A7238G", "A7241C", "A7261T", "T7309C", "G7322A", "C7429T", "C7582T", "G7629C", "T7630A", "A7644G", "C7645A", "G7754A", "G7915A", "C7932T", "A7942C", "C8196T", "A8264T", "T8278G", "T8290C", "A8370C", "A8399G", "C8437A", "A8459G", "A8519T", "G8526C", "C8597T", "G8653A", "A8666T", "A8746T", "A8770T", "C8775T", "A8780G", "T8795G", "A8812C", "A8834G", "A8837G", "C8840T", "T8887G", "A8892G", "C8937T", "G8981A"], "INT": ["E11D", "R14K", "R20K", "N39S", "S119T", "S230N", "D256N"], "RT-p51": ["K102R", "T135I", "I200L", "I274V", "D291E", "I292V", "D335E", "M377T", "A400T"], "RT-p66": ["K102R", "T135I", "I200L", "I274V", "D291E", "I292V", "D335E", "M377T", "A400T", "Q520L"], "gp120": ["A2T", "V3A", "T35K", "N102T", "T110-", "N111-", "-123K", "-124G", "M133T", "K143E", "V144A", "D159T", "N160S", "S161N", "S162R", "K212N", "I242V", "S250L", "H280R", "R315K", "N328T", "N334R", "N358D", "-368N", "N369I", "T371G", "-372S", "-373E", "-374E", "-375L", "-376N", "-377S", "N378T", "-379N", "T385I", "M398L", "T402I", "V418E", "N420S", "N432V", "N434G", "K462E", "I463L"], "gp41": ["V7M", "S109T", "N114R", "A151T", "T210I", "T298I", "I321L", "F325L"], "nef": ["I10L", "A32E", "E59D", "E62Q", "R104K", "E108D", "Y135F", "Y143F", "N157T", "M182R", "K184E", "H199Y"], "p17": ["M61I", "S72T", "Q91K", "A93E", "A115T", "K126N", "-127T"], "p2": ["V7A"], "p24": ["H12Y", "L15M", "I115V", "G120N", "V148A"], "p6": ["E19G", "-23S", "P24S", "S25-", "K31R", "L35M", "P49H", "L50*"], "p7": ["K20R"], "pro": ["K70R"], "rev": ["E11K", "R14Q", "A15T", "V16L", "R17K", "K32Q"], "tat": ["L3P", "V36S", "R57K", "Q60P", "S61D", "S62T", "K71E", "P75S", "Q78P"], "vif": ["Y30H", "A35T", "L91R", "R93S", "I98L", "I124V", "T157A"], "vpr": ["I61T", "Q77R"], "vpu": ["V21I", "V22A", "D60E", "T61L", "D62A", "E63K", "A65V", "K66E", "L67M", "-68G", "V69N", "E70Y", "M71-", "G72-", "N73-", "Y74-", "D75-", "G77-", "D78-", "D79-", "N80D", "N81L"]}, "labels": {"aa": "INT: E11D, R14K, R20K, N39S, S119T, S230N, D256N; RT-p51: K102R, T135I, I200L, I274V, D291E, I292V, D335E, M377T, A400T; RT-p66: K102R, T135I, I200L, I274V, D291E, I292V, D335E, M377T, A400T, Q520L; gp120: A2T, V3A, T35K, N102T, T110-, N111-, -123K, -124G, M133T, K143E, V144A, D159T, N160S, S161N, S162R, K212N, I242V, S250L, H280R, R315K, N328T, N334R, N358D, -368N, N369I, T371G, -372S, -373E, -374E, -375L, -376N, -377S, N378T, -379N, T385I, M398L, T402I, V418E, N420S, N432V, N434G, K462E, I463L; gp41: V7M, S109T, N114R, A151T, T210I, T298I, I321L, F325L; nef: I10L, A32E, E59D, E62Q, R104K, E108D, Y135F, Y143F, N157T, M182R, K184E, H199Y; p17: M61I, S72T, Q91K, A93E, A115T, K126N, -127T; p2: V7A; p24: H12Y, L15M, I115V, G120N, V148A; p6: E19G, -23S, P24S, S25-, K31R, L35M, P49H, L50*; p7: K20R; pro: K70R; rev: E11K, R14Q, A15T, V16L, R17K, K32Q; tat: L3P, V36S, R57K, Q60P, S61D, S62T, K71E, P75S, Q78P; vif: Y30H, A35T, L91R, R93S, I98L, I124V, T157A; vpr: I61T, Q77R; vpu: V21I, V22A, D60E, T61L, D62A, E63K, A65V, K66E, L67M, -68G, V69N, E70Y, M71-, G72-, N73-, Y74-, D75-, G77-, D78-, D79-, N80D, N81L"}}}]}, {"name": "CRF35_A1D_NODE_0000010", "node_attrs": {"div": 0.12593, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G615A", "A978T", "A1019G", "A1230C", "A1242G", "A1782T", "A3637G", "T3793G", "T3844G", "C4890G", "G5030A", "-6215A", "-6220G", "G6333A", "-6828G", "-6829G", "T6946C", "-6967T", "-6970C", "A7089G", "A7315G", "A7669G", "A8746T"], "INT": ["D6E"], "gp41": ["R214G"], "nef": ["Y135F"], "p17": ["V94I"], "p24": ["I96M", "T171V"], "p6": ["L50S"], "rev": ["K32R"], "tat": ["C31S"], "vif": ["L102V"]}, "labels": {"aa": "INT: D6E; gp41: R214G; nef: Y135F; p17: V94I; p24: I96M, T171V; p6: L50S; rev: K32R; tat: C31S; vif: L102V"}}, "children": [{"name": "EF158041", "node_attrs": {"div": 0.14825, "accession": "EF158041", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "AF"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05AF095"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "T467C", "T549A", "C606A", "G614A", "C698T", "G740A", "A762G", "T788C", "C947T", "T1052C", "A1089G", "A1090G", "C1091T", "G1142A", "A1176G", "C1243T", "A1277G", "C1304T", "A1337G", "T1444C", "G1474A", "G1493T", "A1529C", "G1562A", "A1568G", "A1588G", "A1656C", "T1754C", "C1903T", "C1960T", "A2002G", "A2059G", "A2075C", "G2111A", "A2260C", "C2392T", "A2422G", "T2456G", "A2630G", "C2644T", "G2681A", "G2683T", "A2828G", "T2829A", "A2915G", "A2923G", "A2925G", "C2953T", "A2959G", "C3100T", "G3166A", "T3175G", "A3224C", "A3229G", "C3252T", "C3266T", "A3756C", "A3770G", "T3778C", "C3857T", "G3878C", "C3995A", "G3997A", "A4255G", "G4354A", "A4498G", "G4677A", "C4679A", "G4689A", "G4735A", "A4748G", "G4774A", "G4779A", "C4954T", "T4982C", "G4986C", "C5006T", "C5034T", "C5091T", "C5102T", "A5112G", "T5160C", "G5161A", "T5203C", "T5245C", "C5251T", "C5294T", "C5334A", "A5335G", "A5369G", "A5395G", "G5444A", "A5453T", "T5467A", "C5514A", "A5581C", "G5602C", "T5614C", "G5627T", "A5695C", "G5730A", "C5769T", "T5772C", "G5839A", "G5963A", "A6024C", "A6030G", "G6046T", "T6160A", "T6163-", "A6164-", "C6166-", "A6168-", "A6182-", "C6183-", "C6184-", "A6185-", "A6186-", "C6187T", "A6194G", "-6195C", "-6196A", "-6199C", "-6201C", "-6202C", "-6203A", "-6204A", "-6205C", "-6207T", "-6208A", "-6210C", "-6211G", "A6212G", "-6213A", "-6214G", "-6216A", "-6217C", "-6218A", "-6219T", "A6223C", "G6253A", "A6276G", "T6325G", "G6327A", "G6451A", "G6463T", "G6464A", "C6559T", "A6571C", "A6584C", "G6631T", "G6716A", "T6776G", "A6780C", "A6811C", "A6821C", "A6848G", "A6855G", "A6875G", "A6926G", "C6949T", "T6952C", "-6966C", "-6968G", "-6969A", "G6972T", "C6973A", "A6978G", "T6983C", "-6994A", "-6995A", "-6996A", "-6997T", "-6998A", "-6999G", "G7072A", "A7149C", "T7156C", "C7160-", "A7163T", "T7204C", "T7213C", "A7241C", "T7309C", "G7322A", "T7604A", "C7645A", "A7688G", "G7720A", "G7759A", "C7801A", "A7820T", "A7840G", "T7930C", "A8029G", "A8032G", "G8109A", "G8133A", "T8164C", "A8208G", "A8222T", "G8254T", "A8258G", "T8302C", "C8323T", "T8332A", "T8371A", "G8398A", "T8411C", "A8424C", "T8451C", "A8474G", "T8483C", "A8486G", "C8565T", "A8576G", "T8594C", "C8607T", "A8608T", "A8647G", "C8648G", "A8663G", "G8738A", "A8739G", "T8771C", "A8794T", "A8834G", "G8873A", "A8874G", "A8880G", "C8881T", "G8977A"], "INT": ["E35Q", "L74I"], "RT-p51": ["D6N", "Y121D", "I179V", "G196S", "M245E", "I274V", "K277R", "M377L", "T386I"], "RT-p66": ["D6N", "Y121D", "I179V", "G196S", "M245E", "I274V", "K277R", "M377L", "T386I", "N554T", "I559V"], "gp120": ["V37M", "H57P", "E59G", "E64D", "N102K", "-109A", "-112M", "-113N", "-124G", "M133I", "K141R", "D157E", "G158D", "K203N", "E204K", "E239D", "I244L", "Q259H", "N272S", "H280R", "A288T", "S308A", "E309A", "K323Q", "I332V", "N334S", "I341V", "N358D", "-368N", "-372N", "-373S", "-374T", "-375N", "N378-", "M406I", "N432T", "N435S", "E436-", "I463L"], "gp41": ["V7M", "S101T", "N114K", "N129D", "N166K", "I173L", "R269K", "N302S", "I307L", "R317S", "I319V"], "nef": ["I10K", "R19K", "K28Q", "I48M", "P75S", "H89F", "Y102W", "I133V", "E151V", "R178G", "T180V"], "p1": ["N9H"], "p17": ["S72T", "Q91K"], "p2": ["V7A"], "p24": ["I11V", "S149G"], "p6": ["T39A"], "p7": ["R3K", "Q9H", "E21D", "K41R"], "pro": ["I93L"], "rev": ["Y28H", "S61G", "T62A", "S106P"], "tat": ["N7D", "Y26F", "I69L", "I74T"], "vif": ["V31I", "A35T", "R50K", "R63K", "V65I", "A123V", "E134Q", "K176E", "C192H"], "vpr": ["Q3R", "M19T", "Q77R"], "vpu": ["L2P", "W7L", "I30L", "D60E", "T61L", "D62A", "E63K", "A65V", "K66E", "L67M", "-68G", "V69N", "E70Y", "M71-", "G72-", "N73-", "Y74-", "D75-", "G77-", "D78-", "D79-", "N80D", "N81L"]}, "labels": {"aa": "INT: E35Q, L74I; RT-p51: D6N, Y121D, I179V, G196S, M245E, I274V, K277R, M377L, T386I; RT-p66: D6N, Y121D, I179V, G196S, M245E, I274V, K277R, M377L, T386I, N554T, I559V; gp120: V37M, H57P, E59G, E64D, N102K, -109A, -112M, -113N, -124G, M133I, K141R, D157E, G158D, K203N, E204K, E239D, I244L, Q259H, N272S, H280R, A288T, S308A, E309A, K323Q, I332V, N334S, I341V, N358D, -368N, -372N, -373S, -374T, -375N, N378-, M406I, N432T, N435S, E436-, I463L; gp41: V7M, S101T, N114K, N129D, N166K, I173L, R269K, N302S, I307L, R317S, I319V; nef: I10K, R19K, K28Q, I48M, P75S, H89F, Y102W, I133V, E151V, R178G, T180V; p1: N9H; p17: S72T, Q91K; p2: V7A; p24: I11V, S149G; p6: T39A; p7: R3K, Q9H, E21D, K41R; pro: I93L; rev: Y28H, S61G, T62A, S106P; tat: N7D, Y26F, I69L, I74T; vif: V31I, A35T, R50K, R63K, V65I, A123V, E134Q, K176E, C192H; vpr: Q3R, M19T, Q77R; vpu: L2P, W7L, I30L, D60E, T61L, D62A, E63K, A65V, K66E, L67M, -68G, V69N, E70Y, M71-, G72-, N73-, Y74-, D75-, G77-, D78-, D79-, N80D, N81L"}}}, {"name": "CRF35_A1D_NODE_0000011", "node_attrs": {"div": 0.12716, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["T2369C", "A3379G", "-6165C", "-6167A", "-6169T", "C6198-", "-6211C", "-6213T", "-6214A", "-6216C", "-6217G", "-6218G", "-6219A", "G6605A", "A7373G", "A7623C", "G7715T", "G7790A", "A7791G", "G8184A", "A8338G", "T8509C"], "gp120": ["D251N", "S370-", "-379N"], "gp41": ["A138S", "D163S", "R294Q"], "nef": ["V56A"]}, "labels": {"aa": "gp120: D251N, S370-, -379N; gp41: A138S, D163S, R294Q; nef: V56A"}}, "children": [{"name": "CRF35_A1D_NODE_0000012", "node_attrs": {"div": 0.13096, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A495G", "T525A", "C596T", "T662G", "T1484C", "A2210G", "G2566A", "C3020A", "T3559C", "A5369G", "A5395G", "G5730A", "A5907G", "C5911T", "T6252C", "G6253A", "G6327A", "G6329A", "T6482C", "G6693A", "T6733A", "A6809G", "-6968G", "-6969G", "A6981G", "T7107A", "A7152G", "C7642T", "C7692T", "A7700G", "C7701A", "G8117-", "C8507T", "G8588A", "T8595G", "T8740C", "T8795G"], "RT-p51": ["T39A", "L309I"], "RT-p66": ["T39A", "L309I"], "gp120": ["K18R", "-105D", "-124G", "M133T", "S210P", "-374S", "-375E", "-376G", "-380T", "V418E"], "gp41": ["T130I", "T133D"], "nef": ["F85V", "I133T"], "p17": ["L64I", "N109K"], "tat": ["N7D"], "vpu": ["P3S"]}, "labels": {"aa": "RT-p51: T39A, L309I; RT-p66: T39A, L309I; gp120: K18R, -105D, -124G, M133T, S210P, -374S, -375E, -376G, -380T, V418E; gp41: T130I, T133D; nef: F85V, I133T; p17: L64I, N109K; tat: N7D; vpu: P3S"}}, "children": [{"name": "AB703608", "node_attrs": {"div": 0.16303, "accession": "AB703608", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "IR"}, "date": {"value": 2010.0}, "Strain_name": {"value": "10IR.THR09F"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A354G", "G378A", "C435A", "A480G", "C482T", "A491C", "A512G", "C539T", "T571A", "G612A", "A619G", "G650A", "C672G", "A677G", "A697G", "A762G", "C767T", "T774A", "G776A", "A818G", "C950T", "T983C", "A1208G", "T1211C", "C1243T", "T1296C", "T1322C", "T1329G", "C1330G", "G1388A", "A1442G", "T1451G", "C1490T", "G1493A", "A1525G", "C1536A", "G1543A", "T1559C", "G1619A", "G1664A", "A1694G", "G1733A", "A1771G", "A1772G", "G1777A", "G1779-", "A1780-", "G1781-", "T1782A", "T1787C", "T1791C", "A1793G", "G1794T", "A1832C", "A1849T", "G1912A", "A1927G", "A1932G", "T1954G", "A1984T", "T2113G", "G2127A", "A2260G", "C2365T", "T2456C", "A2461G", "C2499G", "T2672C", "G2683A", "T2806C", "C2822T", "T2829C", "G2830A", "A2842G", "T2917C", "A2923G", "A2926G", "A2951G", "G3079A", "T3219C", "A3221G", "C3232T", "C3266T", "A3340G", "G3442A", "T3497C", "A3655G", "A3658C", "G3671A", "C3682T", "C3692T", "G3793A", "A3833C", "G3844A", "A3866G", "G3869A", "A3891G", "G3896A", "G4063A", "C4117T", "T4135C", "C4141T", "A4293G", "A4397T", "A4407G", "T4543C", "T4585C", "A4650C", "T4672A", "G4677A", "G4696A", "A4711C", "C4715T", "G4727T", "C4752T", "A4863G", "A4956C", "T5062G", "A5112G", "A5136C", "G5167A", "G5299A", "G5359C", "A5360T", "T5371G", "G5376A", "C5383T", "G5427A", "C5432A", "G5444C", "T5451C", "T5467A", "C5469T", "A5555C", "C5559T", "G5561A", "A5587G", "C5611T", "A5621C", "G5627T", "G5649T", "G5702A", "A5738G", "G5739C", "C5787T", "A5805G", "A5824G", "G5839A", "T5929C", "T5964C", "A6024C", "C6110G", "T6160C", "A6182G", "C6189T", "A6192C", "-6195T", "-6196G", "-6198C", "-6199G", "-6201G", "-6202C", "-6203A", "-6204T", "-6205T", "-6207C", "-6208C", "-6210A", "T6213C", "A6221C", "A6276G", "C6278A", "C6317A", "A6319G", "G6339A", "T6454C", "A6525G", "G6569A", "G6573A", "G6640A", "T6641A", "C6648A", "A6654C", "A6659G", "C6660T", "A6668G", "C6673T", "A6684G", "A6728G", "G6731A", "A6732C", "T6735A", "A6775G", "C6781A", "A6790C", "A6797G", "A6855G", "T6860C", "A6868G", "T6963C", "-6966A", "A6987C", "T6988A", "A6989G", "G6990A", "A7002G", "A7005G", "C7008A", "C7020A", "G7072A", "G7101T", "G7106A", "G7132A", "A7148G", "A7149G", "A7151G", "C7164A", "G7269A", "G7289C", "G7322T", "G7428A", "T7432C", "A7525C", "A7533G", "C7624A", "G7629A", "A7688T", "A7713C", "G7735A", "C7801T", "A7818G", "T7876C", "A7903C", "T7913C", "G7918T", "T7930C", "A7942G", "G7944A", "T7948A", "A7953G", "C7959T", "A7997G", "C7998T", "A8023C", "T8103C", "-8117C", "A8188G", "C8205T", "T8215G", "A8264G", "T8265C", "A8275C", "C8291T", "C8300-", "C8301-", "T8302-", "A8303-", "G8304-", "A8305-", "A8306-", "G8307-", "G8313A", "C8315T", "G8317A", "C8321T", "T8333C", "G8338A", "G8354A", "T8366C", "T8371A", "T8374G", "G8393A", "G8398A", "A8424G", "C8471T", "G8522A", "G8538A", "A8564G", "G8570A", "C8581A", "G8590A", "A8591C", "A8617G", "G8619A", "A8622G", "G8682A", "A8688C", "A8701T", "T8751C", "A8770T", "T8789A", "G8799A", "C8813T", "A8834G", "T8864C", "G8870A", "G8905T", "A8915T", "C8928A", "T8947A"], "INT": ["I31V", "V32I", "N39S", "D41N", "K173R", "I208L", "K211R"], "RT-p51": ["D6E", "R11K", "Y121H", "T135R", "P243S", "M245T", "T286A", "V375A", "T376A"], "RT-p66": ["D6E", "R11K", "Y121H", "T135R", "P243S", "M245T", "T286A", "V375A", "T376A", "S468P", "V526I"], "gp120": ["V37A", "H57P", "Q86E", "-106M", "-107Q", "N108-", "T110-", "N111-", "K141R", "Q142K", "Q155K", "G158-", "S161N", "K224R", "E239K", "G240E", "S263T", "T265K", "N267T", "T269V", "N272G", "K277R", "T292A", "D293T", "I294N", "K312N", "R315G", "T319A", "N334S", "S336P", "-368N", "N369-", "-372N", "-373G", "-377S", "N378T", "N379D", "-381S", "-382G", "-383N", "D384-", "T385-", "P389Q", "M406I", "R416M", "E418K", "N432G", "N433G", "N435Q", "E436S", "N437Q", "R472K", "E479Q"], "gp41": ["V7L", "M24V", "S42N", "R74S", "K77R", "N107T", "S109N", "N129Y", "E137A", "K172R", "G214E", "D215E", "D217G", "P219L", "T232V", "V267A", "E272Q", "T301I", "I321A", "R324S", "L330F", "P333-", "R334-", "R335-"], "nef": ["I10K", "V11G", "R19K", "K28E", "V66I", "T80N", "G83D", "K92R", "E93K", "K94E", "V114I", "N116H", "Y120F", "Y143F", "D149E", "V153I", "R188L", "L191F", "Q196K", "F202Y"], "p17": ["I7V", "A15T", "L34I", "S49G", "E52D", "T54A", "F79Y", "A93T", "K95R", "Q113E", "D121G"], "p24": ["I11V", "L15I", "G120N", "S200G"], "p6": ["K31R", "G33-", "L35M", "T39S"], "p7": ["K20R", "L24I", "R26K"], "pro": ["T12P", "K45R"], "rev": ["A15V", "V16I", "Y28H", "R32G", "S34T", "N50S", "I59L", "G90A", "T114A"], "tat": ["T19K", "N23T", "Q60P", "S62N", "K71E", "I74T", "Q78R", "G79R", "I80N", "T82A", "P84S"], "vif": ["N22H", "M29K", "V31I", "G37D", "H42P", "R47S", "H56Y", "R93G", "I124L", "I159R", "K176E"], "vpr": ["Q3R", "Q11P", "R85P", "V89G", "D91N", "S93F"], "vpu": ["L2S", "W7L", "R32K", "K44S", "D60E", "T61L", "D62A", "E63K", "A65V", "K66E", "L67M", "-68G", "V69-", "E70-", "M71-", "G72-", "N73-", "Y74-", "D75-", "G77-", "D79Y", "N80D", "N81L"]}, "labels": {"aa": "INT: I31V, V32I, N39S, D41N, K173R, I208L, K211R; RT-p51: D6E, R11K, Y121H, T135R, P243S, M245T, T286A, V375A, T376A; RT-p66: D6E, R11K, Y121H, T135R, P243S, M245T, T286A, V375A, T376A, S468P, V526I; gp120: V37A, H57P, Q86E, -106M, -107Q, N108-, T110-, N111-, K141R, Q142K, Q155K, G158-, S161N, K224R, E239K, G240E, S263T, T265K, N267T, T269V, N272G, K277R, T292A, D293T, I294N, K312N, R315G, T319A, N334S, S336P, -368N, N369-, -372N, -373G, -377S, N378T, N379D, -381S, -382G, -383N, D384-, T385-, P389Q, M406I, R416M, E418K, N432G, N433G, N435Q, E436S, N437Q, R472K, E479Q; gp41: V7L, M24V, S42N, R74S, K77R, N107T, S109N, N129Y, E137A, K172R, G214E, D215E, D217G, P219L, T232V, V267A, E272Q, T301I, I321A, R324S, L330F, P333-, R334-, R335-; nef: I10K, V11G, R19K, K28E, V66I, T80N, G83D, K92R, E93K, K94E, V114I, N116H, Y120F, Y143F, D149E, V153I, R188L, L191F, Q196K, F202Y; p17: I7V, A15T, L34I, S49G, E52D, T54A, F79Y, A93T, K95R, Q113E, D121G; p24: I11V, L15I, G120N, S200G; p6: K31R, G33-, L35M, T39S; p7: K20R, L24I, R26K; pro: T12P, K45R; rev: A15V, V16I, Y28H, R32G, S34T, N50S, I59L, G90A, T114A; tat: T19K, N23T, Q60P, S62N, K71E, I74T, Q78R, G79R, I80N, T82A, P84S; vif: N22H, M29K, V31I, G37D, H42P, R47S, H56Y, R93G, I124L, I159R, K176E; vpr: Q3R, Q11P, R85P, V89G, D91N, S93F; vpu: L2S, W7L, R32K, K44S, D60E, T61L, D62A, E63K, A65V, K66E, L67M, -68G, V69-, E70-, M71-, G72-, N73-, Y74-, D75-, G77-, D79Y, N80D, N81L"}}}, {"name": "AB703614", "node_attrs": {"div": 0.15778999999999999, "accession": "AB703614", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "IR"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11IR.SYZ38F"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["T362G", "G386A", "A417C", "C426T", "C496G", "G562A", "A569G", "A711-", "A712-", "-714C", "-715A", "T944C", "A968C", "G980A", "G1016A", "A1028G", "A1089G", "A1090G", "G1173A", "T1187A", "G1271T", "G1278A", "G1279A", "C1304A", "A1349G", "C1406T", "G1430A", "C1449G", "A1450G", "-1455A", "-1456A", "-1457T", "A1458-", "A1459-", "C1460-", "A1461G", "C1478A", "A1529G", "C1571T", "T1574C", "C1598T", "A1774G", "T1792C", "C1828T", "G1858A", "A2007G", "T2087C", "G2117A", "A2186T", "A2191G", "T2244C", "T2302C", "G2320A", "G2389A", "A2422G", "C2464A", "C2485T", "C2499T", "T2597C", "T2689C", "A2704G", "G2707A", "T2788G", "A2828G", "A2839G", "T2885C", "A2919G", "A2962G", "A3028G", "A3196G", "G3205T", "G3208A", "C3252T", "A3265G", "C3271T", "T3380C", "G3385A", "G3463A", "A3592T", "A3619G", "T3644A", "G3769A", "A3808G", "A3838G", "G3859A", "A3871G", "A4025C", "G4109A", "A4174C", "A4246G", "A4384G", "A4423C", "T4477C", "T4667C", "A4693C", "A4717T", "C4728A", "T4738C", "G4774A", "T4805C", "A4806C", "G4856A", "A4861G", "A4878T", "G4890A", "T4891C", "C4977T", "C4978G", "T4982G", "A4988C", "A4993C", "C5019T", "T5043A", "G5128A", "G5267A", "T5286C", "C5294T", "T5313C", "A5335G", "C5391T", "G5444A", "G5463A", "G5534A", "A5535G", "C5563A", "C5612T", "T5622A", "A5695G", "G5706A", "A5718G", "T5781C", "C5826T", "T5841C", "T5844C", "G5917A", "A6119C", "A6158C", "C6165A", "A6167G", "-6170G", "-6171T", "-6172A", "-6173A", "-6174G", "-6175G", "-6176A", "-6177A", "-6178C", "-6179G", "-6180A", "-6181T", "C6189A", "C6190A", "A6191-", "A6192-", "C6193-", "A6194-", "A6197-", "A6200-", "-6207G", "-6208A", "-6210C", "C6216T", "G6267A", "G6311A", "T6315C", "T6322A", "G6326A", "A6330G", "A6333C", "T6361C", "T6373G", "T6382G", "A6394G", "A6442G", "A6547G", "G6575A", "A6583G", "A6604G", "T6641C", "C6648T", "A6654G", "G6669A", "C6713A", "G6771A", "A6775C", "A6780C", "A6786G", "C6810A", "G6828-", "G6829-", "-6831G", "-6832G", "-6833A", "-6834A", "-6835C", "C6838A", "A6840C", "T6863G", "A6950G", "-6966C", "-6974A", "-6975G", "-6976C", "C6984T", "C6991T", "C7059T", "G7089A", "A7095T", "A7136C", "A7154G", "T7156A", "G7158A", "C7160G", "A7186G", "G7197A", "C7201T", "A7241C", "T7308C", "G7373A", "G7508A", "C7623A", "C7645A", "C7655T", "A7688G", "A7691C", "A7693G", "A7711G", "G7720A", "C7775T", "T7864C", "C7917T", "C7932T", "G7943A", "G7961A", "A7964G", "A8032G", "C8047T", "C8051A", "C8062T", "C8104-", "G8105-", "C8106-", "G8107-", "A8108-", "G8109-", "G8110-", "A8111-", "C8112-", "T8113-", "G8114-", "T8115-", "G8116-", "A8118-", "A8119-", "C8120-", "T8121-", "T8122-", "C8123-", "T8124-", "A8143G", "T8155C", "T8172C", "A8208C", "T8209G", "G8213T", "T8223C", "A8228G", "C8320A", "C8323T", "A8370G", "A8396C", "C8416T", "A8425C", "G8436C", "C8477T", "T8480C", "A8484G", "C8499T", "G8517A", "A8519G", "G8534T", "C8552T", "C8597A", "C8603A", "A8656G", "A8823G", "C8831T", "G8977A", "A8978C", "C8979A", "A8980C", "G8981A", "G8983A", "C8985G", "T8988G", "C8990T", "G8991A", "C8992A", "T8993C", "A9005-", "G9006-", "G9007-", "G9008-", "A9009-", "G9010-", "G9011-", "T9012-", "G9013-", "T9014-", "G9015-", "G9016-", "T9017-", "T9018-", "T9019-", "G9020-", "G9021-", "G9022-", "C9023-", "G9024-", "G9025-", "A9026-", "G9027-", "T9028-", "T9029-", "G9030-", "G9031-", "G9032-", "G9033-", "A9034-", "G9035-", "T9036-", "G9037-", "G9038-", "C9039-", "T9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-", "T9060-", "A9061-", "A9062-", "G9063-", "C9064-", "A9065-"], "INT": ["I84L", "V112I", "I203M", "Q216H"], "RT-p51": ["V8I", "I31L", "I50T", "D123E", "T135I", "M245V", "K275R", "E370D", "T386I"], "RT-p66": ["V8I", "I31L", "I50T", "D123E", "T135I", "M245V", "K275R", "E370D", "T386I", "L517I"], "gp120": ["K89Q", "N102H", "T104N", "-106V", "-107R", "-109D", "-112K", "-118R", "-119T", "-120I", "-121M", "-122E", "-123K", "R138K", "V153I", "V154A", "D157K", "G158E", "I173M", "E241K", "I243M", "S263P", "T265I", "N267S", "Q287K", "A291T", "T292D", "D293E", "S306N", "R307S", "E309A", "N311S", "T319E", "-327N", "N328K", "K329T", "S337A", "T366A", "-370I", "-372G", "-373S", "-377L", "N379S", "-381N", "T402I", "R412Q", "E414V", "N434R", "N437S", "T439N", "R448K", "I463L"], "gp41": ["V2A", "V69I", "N114K", "N129D", "I130L", "S205L", "T210I", "G214R", "G220R", "R221G", "A268G", "R269H", "T270S", "V271S", "E272L", "L273K", "L274G", "G275L", "L290S", "N302T", "V304F", "I307T", "I309V"], "nef": ["I10V", "E18D", "A25V", "K28T", "A32P", "I48V", "P51S", "E59K", "E64D", "K105R", "N161D"], "p17": ["S9R", "K28Q", "T54G", "R76K", "K126-", "-127Q"], "p2": ["-10V", "I13-"], "p24": ["E79D", "V148I", "D152E", "V171A", "E180D", "G183N"], "p6": ["D32G", "L38S", "T39A", "S50L"], "pro": ["K70R"], "rev": ["D7S", "R32K", "R38Q", "K39R", "T62A", "P67S", "A68E", "P72S", "R86-", "E87-", "D88-", "C89-", "G90-", "T91-", "S92-", "R99G", "S103P"], "tat": ["S31C", "R53K", "Q63K", "P75S"], "vif": ["K36T", "Y44F", "H48N", "V51A", "R63K", "T74P", "K92R", "I98L", "V102T", "P131C", "S132R", "E134D", "Q136P", "L153I", "R181K"], "vpr": ["A55T", "I61T", "I70T", "Q77R", "P96S"], "vpu": ["H5Q", "I30V", "-76L"]}, "labels": {"aa": "INT: I84L, V112I, I203M, Q216H; RT-p51: V8I, I31L, I50T, D123E, T135I, M245V, K275R, E370D, T386I; RT-p66: V8I, I31L, I50T, D123E, T135I, M245V, K275R, E370D, T386I, L517I; gp120: K89Q, N102H, T104N, -106V, -107R, -109D, -112K, -118R, -119T, -120I, -121M, -122E, -123K, R138K, V153I, V154A, D157K, G158E, I173M, E241K, I243M, S263P, T265I, N267S, Q287K, A291T, T292D, D293E, S306N, R307S, E309A, N311S, T319E, -327N, N328K, K329T, S337A, T366A, -370I, -372G, -373S, -377L, N379S, -381N, T402I, R412Q, E414V, N434R, N437S, T439N, R448K, I463L; gp41: V2A, V69I, N114K, N129D, I130L, S205L, T210I, G214R, G220R, R221G, A268G, R269H, T270S, V271S, E272L, L273K, L274G, G275L, L290S, N302T, V304F, I307T, I309V; nef: I10V, E18D, A25V, K28T, A32P, I48V, P51S, E59K, E64D, K105R, N161D; p17: S9R, K28Q, T54G, R76K, K126-, -127Q; p2: -10V, I13-; p24: E79D, V148I, D152E, V171A, E180D, G183N; p6: D32G, L38S, T39A, S50L; pro: K70R; rev: D7S, R32K, R38Q, K39R, T62A, P67S, A68E, P72S, R86-, E87-, D88-, C89-, G90-, T91-, S92-, R99G, S103P; tat: S31C, R53K, Q63K, P75S; vif: K36T, Y44F, H48N, V51A, R63K, T74P, K92R, I98L, V102T, P131C, S132R, E134D, Q136P, L153I, R181K; vpr: A55T, I61T, I70T, Q77R, P96S; vpu: H5Q, I30V, -76L"}}}]}, {"name": "CRF35_A1D_NODE_0000013", "node_attrs": {"div": 0.12825999999999999, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A903G", "G986A", "A1123G", "G1794A", "A5431G", "G5461A", "C5469T", "-6170G", "-6171T", "-6172C", "C7164A"], "gp120": ["H280R", "T371-"], "gp41": ["M24V"], "p24": ["I58V", "G120N", "K131R"], "rev": ["R14K"], "tat": ["T19A", "N23S"], "vpu": ["-76L"]}, "labels": {"aa": "gp120: H280R, T371-; gp41: M24V; p24: I58V, G120N, K131R; rev: R14K; tat: T19A, N23S; vpu: -76L"}}, "children": [{"name": "CRF35_A1D_NODE_0000014", "node_attrs": {"div": 0.13194999999999998, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A512G", "C539T", "G614A", "T944C", "T978A", "A1034G", "A1046T", "A1074G", "C2369T", "A2722G", "T2770A", "A2915G", "A2985C", "A3631C", "T3644A", "G4109A", "G4516A", "A4878T", "G4890A", "T5614C", "C6109T", "A6194G", "G6225A", "A6840C", "-6957A", "T6961C", "C6964T", "A6965G", "T6967C", "A6971-", "G6972-", "C6973-", "-6998G", "-6999A", "G7629A", "C7645T", "A8834C", "G8875A"], "INT": ["V112I"], "RT-p51": ["I274V", "E297A"], "RT-p66": ["I274V", "E297A", "K512N", "L517I", "E527G"], "gp120": ["-105N", "K329T", "-372S", "-377S", "-380T"], "gp41": ["N107T", "S109N", "N157D"], "nef": ["I133V", "R178K"], "p24": ["I115V"], "vif": ["I98L", "V102M"]}, "labels": {"aa": "INT: V112I; RT-p51: I274V, E297A; RT-p66: I274V, E297A, K512N, L517I, E527G; gp120: -105N, K329T, -372S, -377S, -380T; gp41: N107T, S109N, N157D; nef: I133V, R178K; p24: I115V; vif: I98L, V102M"}}, "children": [{"name": "AB703610", "node_attrs": {"div": 0.15605999999999998, "accession": "AB703610", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "IR"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11IR.SYZ27F"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "A417C", "A488G", "A585G", "C586T", "A607G", "A611G", "A619G", "T635G", "G690-", "C691-", "A692-", "A839G", "A857C", "T892C", "G893T", "C902T", "C1172T", "C1178T", "G1242A", "A1327G", "A1350G", "A1404G", "C1478T", "C1523T", "C1541T", "A1642G", "G1661A", "G1852A", "A1932G", "A2112C", "A2140G", "A2215C", "T2266C", "A2341G", "T2456G", "T2476C", "A2482T", "C2499T", "G2728A", "G2752A", "A2925G", "A2951G", "A3037G", "C3067A", "C3075T", "A3099G", "G3127A", "T3197C", "T3219C", "C3223T", "A3280G", "C3376T", "T3412C", "G3442A", "T3450A", "G3494A", "T3497A", "C3541T", "A3592C", "G3664A", "A3675G", "G3679A", "G3686A", "G3718A", "G3766A", "G3769A", "G3816A", "G3825A", "A3907C", "G3916A", "C3922T", "A3923G", "G3997A", "A4399G", "C4412T", "G4622A", "G4631A", "T4674C", "T4730C", "G4735A", "A4739C", "T4769G", "G4786A", "A4816G", "C4820A", "T4891C", "A4901G", "A4923C", "C5034T", "G5137A", "A5179C", "C5251T", "G5289A", "A5291G", "G5299A", "A5324G", "G5330A", "C5342T", "C5372T", "A5461G", "T5466C", "A5480C", "G5482C", "T5484A", "C5511T", "A5548G", "C5552A", "G5565A", "A5623G", "G5629A", "C5658T", "T5748C", "C5789T", "A5790G", "A5792C", "T5793A", "G5794A", "T5797C", "G5799T", "C5801T", "A5802G", "A5803G", "A5805G", "C5806A", "T5808G", "-5809G", "-5810G", "-5811G", "G5812-", "T5813-", "G5814-", "G5815-", "A5816-", "G5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "A5866C", "A5907G", "C5911T", "C5958A", "A6024T", "G6029A", "T6085G", "T6163C", "T6169C", "G6170A", "C6172A", "C6187T", "G6194-", "A6197-", "A6200-", "A6206-", "A6209-", "C6211-", "T6246A", "A6251G", "A6277C", "A6283G", "G6311A", "A6316G", "G6326A", "G6327T", "T6361C", "A6490T", "C6511T", "G6553A", "G6575C", "A6581G", "C6721T", "G6743A", "G6774A", "G6779A", "C6781A", "A6785C", "A6788G", "A6809G", "C6810A", "A6814G", "A6841C", "C6850T", "A6855G", "T6856G", "G6913A", "A6926C", "-6956A", "-6958T", "T6963C", "-6966A", "-6968A", "-6969G", "A6978G", "A6981G", "G6990A", "-6994A", "-6995G", "-6996A", "-6997T", "A7000C", "A7002C", "C7006G", "T7009C", "C7018A", "A7021G", "G7089A", "G7101A", "G7102A", "A7126G", "A7148G", "A7152C", "T7153A", "T7159G", "C7160T", "A7161C", "G7162A", "C7171A", "G7182C", "C7201T", "G7276A", "A7296G", "G7322A", "A7372T", "G7373C", "G7428A", "A7470G", "C7642A", "A7688T", "C7701A", "A7741G", "A7772G", "G7791A", "A7936G", "C7959T", "G7987A", "G8036A", "T8097C", "A8193G", "C8205T", "T8215G", "A8228G", "A8236G", "C8293T", "C8321T", "C8323A", "A8327G", "C8507T", "C8509T", "A8584T", "C8597T", "G8653A", "A8666C", "A8739G", "A8880G", "C8881T", "T8887A", "A8917C", "A8929G", "C8934A", "G8977A", "A8978-", "C8979A", "A8980C"], "INT": ["R14K", "S17N", "Q44H", "M50V", "I208M", "G283S", "D286N"], "RT-p51": ["D6A", "E40D", "Y121D", "T135I", "K277R", "T286A", "D324E", "A327V", "D335G", "V375A"], "RT-p66": ["D6A", "E40D", "Y121D", "T135I", "K277R", "T286A", "D324E", "A327V", "D335G", "V375A", "L452Q", "V467I", "S468T", "V531I"], "gp120": ["E4D", "K18R", "T35K", "H57L", "E59K", "H77Q", "-106I", "-107T", "T110N", "N111I", "-112T", "-114D", "-115M", "-123K", "-124E", "F131Y", "M133V", "K141N", "V153I", "K212N", "E241Q", "I243V", "N272S", "D297N", "R307K", "E309K", "N311H", "K312E", "T319E", "N334R", "N358H", "-368N", "-370T", "-371D", "-373G", "-376G", "-381D", "-383T", "R412Q", "R416K", "N433T", "N435R", "E436S", "G443A", "E481G"], "gp41": ["V7M", "V24L", "S42N", "K56R", "D113E", "N129Y", "T133N", "S163N", "P219L", "A245T", "L265S", "K297R", "T301I", "I309V", "R342G"], "nef": ["A56V", "Y81F", "R104K", "E108D", "E151D", "T180V", "M182K", "K192T", "Q196R", "L198M"], "p1": ["K4R"], "p17": ["A15T", "K28Q", "T84V", "Q91R", "I92M", "K95R", "A120-"], "p24": ["M54T", "L83M", "V171T", "K199R", "T207A", "S225G"], "pro": ["K45R"], "rev": ["L13I", "K14R", "R17K", "K30E", "A47T", "C63Y"], "tat": ["S31C", "Q35P", "V36L", "T58A", "P59H", "Q76R", "P84S"], "vif": ["Y30H", "R50K", "D61E", "R67K", "K77R", "D78E", "M102T", "N113H", "R184K"], "vpr": ["E25D", "R62K", "I63V"], "vpu": ["I6V", "A8T", "E63D"]}, "labels": {"aa": "INT: R14K, S17N, Q44H, M50V, I208M, G283S, D286N; RT-p51: D6A, E40D, Y121D, T135I, K277R, T286A, D324E, A327V, D335G, V375A; RT-p66: D6A, E40D, Y121D, T135I, K277R, T286A, D324E, A327V, D335G, V375A, L452Q, V467I, S468T, V531I; gp120: E4D, K18R, T35K, H57L, E59K, H77Q, -106I, -107T, T110N, N111I, -112T, -114D, -115M, -123K, -124E, F131Y, M133V, K141N, V153I, K212N, E241Q, I243V, N272S, D297N, R307K, E309K, N311H, K312E, T319E, N334R, N358H, -368N, -370T, -371D, -373G, -376G, -381D, -383T, R412Q, R416K, N433T, N435R, E436S, G443A, E481G; gp41: V7M, V24L, S42N, K56R, D113E, N129Y, T133N, S163N, P219L, A245T, L265S, K297R, T301I, I309V, R342G; nef: A56V, Y81F, R104K, E108D, E151D, T180V, M182K, K192T, Q196R, L198M; p1: K4R; p17: A15T, K28Q, T84V, Q91R, I92M, K95R, A120-; p24: M54T, L83M, V171T, K199R, T207A, S225G; pro: K45R; rev: L13I, K14R, R17K, K30E, A47T, C63Y; tat: S31C, Q35P, V36L, T58A, P59H, Q76R, P84S; vif: Y30H, R50K, D61E, R67K, K77R, D78E, M102T, N113H, R184K; vpr: E25D, R62K, I63V; vpu: I6V, A8T, E63D"}}}, {"name": "CRF35_A1D_NODE_0000015", "node_attrs": {"div": 0.1346, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A354G", "C688T", "A968C", "C1062A", "C1063T", "C1115A", "G5036A", "T5462A", "G5556A", "-6173A", "-6177A", "-6178T", "-6179G", "-6180C", "C6193T", "-6201C", "G6218A", "C6263A", "T6331G", "A6395T", "A6668G", "C6807T", "A6858G", "T6963A", "C6984T", "C7099T", "C7511T", "A7589G", "C7642T", "T8171G", "C8323T", "C8597A", "G8818A"], "gp120": ["-106A", "-107N", "-112D", "L137I", "T181S", "N272G", "A318V", "N335S", "-370N"], "gp41": ["T96A", "L290V"], "nef": ["G159E"], "p17": ["I7V", "A118V"], "p24": ["E79D", "P111I", "D128E"], "rev": ["V108G"], "tat": ["V29K"]}, "labels": {"aa": "gp120: -106A, -107N, -112D, L137I, T181S, N272G, A318V, N335S, -370N; gp41: T96A, L290V; nef: G159E; p17: I7V, A118V; p24: E79D, P111I, D128E; rev: V108G; tat: V29K"}}, "children": [{"name": "AB703613", "node_attrs": {"div": 0.16343, "accession": "AB703613", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "IR"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11IR.SYZ33F"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["C435A", "T479C", "A495G", "T525A", "T575C", "A585G", "C586T", "T635A", "T662G", "C679T", "A699C", "A712C", "A735G", "A762G", "T771G", "G776A", "A810G", "G980A", "A986G", "G1199A", "C1214T", "G1242A", "T1280A", "A1337G", "A1340G", "T1344C", "A1350C", "A1370C", "T1444C", "T1502C", "G1725A", "A1804G", "G1835A", "A1932G", "G1972A", "G2127A", "A2140G", "C2199T", "A2233G", "C2335T", "A2374G", "A2398G", "G2431A", "T2494C", "A2519G", "T2542C", "A2592G", "C2635A", "C2653T", "T2719C", "C2720T", "A2770G", "T2829C", "G2830A", "G2932A", "C3020A", "A3037G", "G3046A", "T3118A", "A3124G", "T3207G", "A3221G", "C3252T", "A3283G", "A3292T", "T3412A", "T3436C", "G3442A", "C3653A", "G3671A", "A3675G", "G3679A", "A3756G", "A3775C", "G3793A", "G3844A", "T3856C", "T3909A", "A3979G", "C4021G", "A4054G", "T4110C", "C4144T", "A4156G", "T4282A", "A4303G", "A4333G", "G4388T", "A4399G", "A4402G", "G4631A", "G4689A", "G4695A", "G4696A", "A4708G", "A4721G", "C4728A", "G4774A", "A4951G", "G4968A", "A4988C", "T4991C", "A5005C", "A5039G", "C5050T", "A5055G", "C5102T", "G5161A", "T5237C", "T5313C", "A5335G", "A5395G", "G5448T", "G5463A", "T5467A", "A5557G", "C5563A", "C5585A", "G5602A", "C5611T", "G5692C", "A5701G", "G5712A", "T5727C", "A5737C", "T5781C", "T5808G", "T5862C", "A5866T", "A5867-", "A5868-", "T5869-", "T5878C", "T5881A", "A5926C", "G5948A", "A5957G", "G5963A", "A6159C", "T6160G", "T6171C", "C6172T", "-6174A", "-6175T", "-6176A", "-6181T", "C6187T", "A6188G", "C6190T", "-6195C", "-6196T", "-6198C", "-6199C", "-6202A", "-6203G", "-6204C", "-6205T", "-6207C", "-6208C", "-6210A", "A6222G", "T6252C", "A6275C", "A6303G", "A6318C", "T6328A", "A6330G", "A6335G", "G6336A", "C6511T", "G6550A", "G6575A", "A6596G", "T6598A", "A6647C", "T6656G", "C6661T", "T6688C", "C6717T", "C6729G", "A6730G", "T6733G", "C6758T", "A6773G", "G6774A", "C6781A", "A6797G", "A6801G", "T6808C", "A6809G", "C6810A", "T6849A", "C6850T", "A6880G", "A6934G", "G6935A", "-6956T", "-6958T", "G6965-", "C6967-", "C6970-", "-6971G", "-6972G", "-6973C", "-6974A", "-6975G", "-6976C", "G6977A", "A6992-", "C6993-", "A6999C", "A7005G", "C7008T", "C7014A", "T7015A", "C7024T", "T7047C", "T7107A", "T7147A", "A7151G", "A7155C", "G7158A", "A7164C", "G7269A", "G7307T", "G7322T", "A7328G", "C7597T", "C7603T", "A7628G", "A7713T", "T7715G", "A7772G", "A7782G", "T7796A", "A7818G", "T7827G", "A7887G", "T7888G", "G7943A", "A7978C", "G7980A", "C8104T", "G8116A", "C8123G", "A8191G", "T8209C", "G8213A", "A8264C", "T8278G", "A8284G", "T8337A", "G8338A", "T8384A", "A8396T", "A8429C", "A8459G", "G8508A", "G8534T", "A8540G", "C8568T", "A8576T", "T8595A", "C8603A", "A8617G", "C8687T", "T8740C", "A8770T", "A8780G", "T8789G", "T8795G", "A8812C", "A8837G", "G8870A", "A8929T", "A8970G", "G8981A"], "INT": ["L45Q", "I112T", "A205S", "I208M", "D286N"], "RT-p51": ["R11K", "T35I", "I142V", "K166R", "M245T", "L309I", "V371G", "T376A", "T386I", "E399D"], "RT-p66": ["R11K", "T35I", "I142V", "K166R", "M245T", "L309I", "V371G", "T376A", "T386I", "E399D", "Q520K", "V526I", "N554S"], "gp120": ["V3A", "E4D", "N5-", "A32T", "T35A", "V37M", "N102T", "-109I", "-113M", "-114R", "-115E", "M133T", "K141Q", "K150R", "Q155P", "D159G", "S161D", "E241K", "N248E", "T265P", "C268G", "A288V", "T292R", "D293E", "H302Y", "R307E", "R315G", "Q316R", "T319E", "I332N", "G361S", "-368Y", "-371G", "-373K", "-374E", "-375L", "-376N", "N378A", "T380G", "-381I", "D384-", "T385-", "T387K", "M398T", "V418E", "N433D", "N434T", "E436Q", "N437T", "R472K"], "gp41": ["V2F", "V7L", "I9V", "N109D", "E137V", "S138A", "N160S", "S165T", "K172R", "I175R", "N195R", "G214R", "E225D", "G226D", "L274V", "V304I", "I321L", "F325L", "L345Q"], "nef": ["E18D", "G31E", "V33A", "A56T", "E64D", "F85I", "K92R", "V133T", "Y143F", "D149E", "N157T", "Q196L"], "p17": ["L34I", "T54A", "L64I", "T84V", "N109K", "A115V", "T122P", "K126T"], "p2": ["V7A"], "p24": ["I2V", "I11V", "S14A", "I27V", "L83I", "V171T", "T207P", "E213D"], "p6": ["G16R", "K42R"], "pro": ["V13I", "K45R"], "rev": ["Q24K", "R32K", "R86C", "G90R", "S92C", "K115E"], "tat": ["N7D", "K24N", "S61G", "Q63K", "P70Q"], "vif": ["A35T", "G37N", "K41R", "H48N", "R63K", "K122R", "V128I", "E134D", "N140T", "T155I", "T157A", "C192Y"], "vpr": ["M19I", "Y45H", "I70T", "Q77R"], "vpu": ["L2S", "E29Q", "R32G", "K44Q"]}, "labels": {"aa": "INT: L45Q, I112T, A205S, I208M, D286N; RT-p51: R11K, T35I, I142V, K166R, M245T, L309I, V371G, T376A, T386I, E399D; RT-p66: R11K, T35I, I142V, K166R, M245T, L309I, V371G, T376A, T386I, E399D, Q520K, V526I, N554S; gp120: V3A, E4D, N5-, A32T, T35A, V37M, N102T, -109I, -113M, -114R, -115E, M133T, K141Q, K150R, Q155P, D159G, S161D, E241K, N248E, T265P, C268G, A288V, T292R, D293E, H302Y, R307E, R315G, Q316R, T319E, I332N, G361S, -368Y, -371G, -373K, -374E, -375L, -376N, N378A, T380G, -381I, D384-, T385-, T387K, M398T, V418E, N433D, N434T, E436Q, N437T, R472K; gp41: V2F, V7L, I9V, N109D, E137V, S138A, N160S, S165T, K172R, I175R, N195R, G214R, E225D, G226D, L274V, V304I, I321L, F325L, L345Q; nef: E18D, G31E, V33A, A56T, E64D, F85I, K92R, V133T, Y143F, D149E, N157T, Q196L; p17: L34I, T54A, L64I, T84V, N109K, A115V, T122P, K126T; p2: V7A; p24: I2V, I11V, S14A, I27V, L83I, V171T, T207P, E213D; p6: G16R, K42R; pro: V13I, K45R; rev: Q24K, R32K, R86C, G90R, S92C, K115E; tat: N7D, K24N, S61G, Q63K, P70Q; vif: A35T, G37N, K41R, H48N, R63K, K122R, V128I, E134D, N140T, T155I, T157A, C192Y; vpr: M19I, Y45H, I70T, Q77R; vpu: L2S, E29Q, R32G, K44Q"}}}, {"name": "EF158042", "node_attrs": {"div": 0.15244, "accession": "EF158042", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "AF"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05AF104"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A480G", "T525C", "C531T", "A554G", "A615G", "A619G", "A711-", "A712-", "G716-", "T892C", "A978C", "C1243T", "G1301A", "G1355A", "G1493A", "A1580G", "A1592G", "A1670G", "T1676C", "-1746C", "-1747C", "-1748T", "C1749-", "C1750-", "C1751-", "A1794G", "T1796C", "C1807T", "A2007G", "A2126G", "C2296T", "G2320A", "A2422G", "C2499T", "A2551G", "A2617G", "A2828G", "C2848T", "A2951G", "C3023T", "A3193G", "G3205T", "C3222G", "T3262C", "C3394A", "G3398A", "G3556A", "T3559C", "A3644G", "G3664A", "A3665G", "G3674A", "A3775G", "A4175G", "A4183C", "G4243A", "A4384G", "G4673A", "T4674C", "T4730C", "A4923C", "C4943T", "T4959G", "T4982G", "G5040A", "A5215G", "T5245C", "C5251T", "T5252C", "C5293G", "G5305A", "T5357A", "G5431A", "A5447G", "G5448A", "T5478C", "A5481G", "G5482T", "T5484G", "A5548G", "C5612T", "T5613G", "G5652A", "G5671A", "T5672C", "T5688C", "G5702A", "G5711A", "G5739A", "T5748G", "T5781A", "C5911A", "C5920T", "T5953C", "C5974T", "T6025G", "G6029A", "A6067C", "C6148T", "T6160A", "T6163C", "G6170T", "-6174C", "-6175C", "-6176T", "-6181C", "C6183A", "C6184T", "A6185T", "A6186T", "-6195A", "-6196C", "-6198A", "-6199T", "A6200T", "-6202C", "-6203A", "-6204A", "-6205C", "-6207A", "-6208G", "-6210G", "A6214T", "A6215G", "C6216A", "G6217C", "A6219T", "G6314A", "T6315C", "C6317G", "T6334G", "A6379G", "G6460A", "A6478T", "T6482C", "A6490C", "A6508G", "A6525G", "A6605G", "A6628G", "T6641A", "C6660G", "A6682G", "G6693C", "C6729T", "A6732G", "G6779A", "C6812A", "A6821G", "A6875G", "G6913A", "C6937A", "-6956A", "-6958A", "A6960T", "-6966C", "-6968A", "-6969G", "-6994A", "-6995A", "-6996A", "-6997T", "A7000C", "A7005T", "C7006A", "A7066G", "C7124A", "A7135C", "A7149G", "A7154G", "T7156A", "A7161T", "G7162A", "T7408G", "G7640A", "T7666G", "A7688G", "G7712A", "A7771G", "A7773G", "A7790G", "G7791A", "A7886C", "C8047T", "G8152A", "A8314G", "A8407G", "A8424G", "A8474C", "A8484G", "A8536G", "G8573A", "A8688C", "C8702T", "A8739G", "T8747C", "A8794T", "A8819C", "A8876G", "T8947A", "G8977A", "C9047T"], "INT": ["S134G", "Q136H", "I203M"], "RT-p51": ["R11G", "T135I", "M245V", "T286A", "E370D", "T376S", "V435I"], "RT-p66": ["R11G", "T135I", "M245V", "T286A", "E370D", "T376S", "V435I", "I517V", "K524E", "G527K"], "gp120": ["D19E", "H57Q", "E59K", "K71N", "N102K", "-109F", "-113N", "-114S", "-115N", "-116K", "-117S", "-120I", "-121D", "-122M", "-123K", "-124E", "V154T", "Q155E", "D159E", "N160K", "S210P", "K212N", "K224R", "N251D", "S263T", "T269S", "R280P", "T292I", "D293G", "I294D", "E309N", "Q320K", "K323E", "I341V", "-368K", "N369I", "-371A", "-375E", "-376E", "S377L", "N379S", "-381N", "-382D", "-383N", "D384V", "L424I", "N432R", "N433V", "N435-", "N437S"], "gp41": ["D113N", "D121E", "N129D", "E137K", "D157S", "S163D", "N195H"], "nef": ["Q22R", "K28E", "I48V", "E65G", "F85L", "N116H", "E151V", "E159D", "F202Y"], "p17": ["S49G", "P66S", "I94V", "K95R", "K126-"], "p24": ["M54T"], "p6": ["T39A", "S43L"], "pro": ["K70R"], "rev": ["P67S", "V102I"], "tat": ["A19T", "K24R", "S31C", "V36L", "T58A"], "vif": ["M29I", "Y30H", "N113H", "L125V", "S132R", "A152T"], "vpr": ["Y50H", "I63M"], "vpu": ["L4S", "H5L", "V22T", "R32K", "R35K", "S47R", "D58E"]}, "labels": {"aa": "INT: S134G, Q136H, I203M; RT-p51: R11G, T135I, M245V, T286A, E370D, T376S, V435I; RT-p66: R11G, T135I, M245V, T286A, E370D, T376S, V435I, I517V, K524E, G527K; gp120: D19E, H57Q, E59K, K71N, N102K, -109F, -113N, -114S, -115N, -116K, -117S, -120I, -121D, -122M, -123K, -124E, V154T, Q155E, D159E, N160K, S210P, K212N, K224R, N251D, S263T, T269S, R280P, T292I, D293G, I294D, E309N, Q320K, K323E, I341V, -368K, N369I, -371A, -375E, -376E, S377L, N379S, -381N, -382D, -383N, D384V, L424I, N432R, N433V, N435-, N437S; gp41: D113N, D121E, N129D, E137K, D157S, S163D, N195H; nef: Q22R, K28E, I48V, E65G, F85L, N116H, E151V, E159D, F202Y; p17: S49G, P66S, I94V, K95R, K126-; p24: M54T; p6: T39A, S43L; pro: K70R; rev: P67S, V102I; tat: A19T, K24R, S31C, V36L, T58A; vif: M29I, Y30H, N113H, L125V, S132R, A152T; vpr: Y50H, I63M; vpu: L4S, H5L, V22T, R32K, R35K, S47R, D58E"}}}]}]}, {"name": "CRF35_A1D_NODE_0000016", "node_attrs": {"div": 0.12886999999999998, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["T5384C", "T5467A", "-6173A", "-6174A", "-6175C", "C6183-", "C6189-", "-6210A", "A6283G", "A6875G", "C6949T", "T8746A"], "gp120": ["I341V"], "nef": ["F135Y"], "tat": ["L3P"]}, "labels": {"aa": "gp120: I341V; nef: F135Y; tat: L3P"}}, "children": [{"name": "GQ477446", "node_attrs": {"div": 0.15466999999999997, "accession": "GQ477446", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "AF"}, "date": {"value": 2007.0}, "Strain_name": {"value": "169H"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["T362G", "G378A", "A410G", "A428G", "A431G", "C435T", "G614A", "C636T", "C684A", "G687A", "A708G", "A818G", "C879G", "A880G", "A881T", "G911A", "T992G", "C1136A", "A1193G", "C1243T", "G1339A", "C1403T", "T1444C", "A1463C", "A1565G", "G1661C", "A1686G", "G1736A", "C1744A", "G1769A", "T1791C", "A1841T", "T1868C", "G1963A", "C1985G", "T1986C", "A2002G", "T2083C", "T2257C", "A2293G", "T2456G", "G2459A", "C2499T", "C2503T", "C2589T", "G2710A", "T2829C", "A2925G", "C2944T", "A2962G", "C2975T", "T3045C", "A3076T", "A3221G", "A3229G", "G3250A", "T3355C", "G3421A", "T3497C", "G3595A", "C3653A", "G3715A", "A3815C", "C4144T", "A4231G", "T4234C", "G4243A", "A4411G", "G4642A", "A4658G", "G4677A", "A4708G", "C4728A", "C4754A", "A4860C", "C4965G", "G4968A", "G5046A", "T5062C", "A5065G", "A5179T", "T5224G", "A5335G", "A5338T", "T5356C", "C5397T", "G5418A", "G5431C", "G5448T", "G5463A", "G5556A", "C5559G", "A5560G", "G5561A", "G5602T", "C5611A", "C5620T", "G5635A", "G5649A", "T5688C", "A5699G", "T5704G", "A5718G", "A5731T", "A5734G", "G5755A", "T5793C", "C5911A", "C5924T", "A6015G", "G6029C", "T6064C", "A6086G", "C6087A", "C6145T", "A6159C", "-6176A", "-6177C", "-6178A", "-6179A", "-6180A", "-6181T", "-6183A", "C6184T", "A6185G", "-6189G", "-6195C", "-6196A", "-6198A", "-6199T", "-6201A", "-6202T", "-6203G", "-6204A", "-6205C", "-6207G", "-6208C", "C6211A", "A6214T", "A6215G", "C6216A", "G6220C", "A6222T", "T6287C", "T6289G", "A6318C", "G6327A", "T6328C", "A6581G", "A6604T", "A6605G", "T6641A", "G6669A", "T6745C", "A6780C", "T6787G", "A6797G", "G6798A", "A6805G", "G6806A", "C6807A", "T6808G", "A6848C", "A6857G", "G6905A", "G6948A", "C6951G", "T6952C", "T6953C", "G6954T", "-6956T", "-6957T", "-6958T", "T6961C", "T6963G", "-6966G", "T6967C", "C6970-", "A6971-", "G6972-", "C6973-", "A6978G", "A6986G", "-6994A", "-6995A", "-6996A", "-6997T", "A7000-", "A7001-", "A7002-", "T7003-", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "A7148G", "A7149C", "A7154G", "T7156G", "G7158A", "C7160G", "A7164G", "C7201T", "G7269A", "G7322T", "A7372G", "G7440A", "A7470G", "G7517C", "A7533G", "C7597T", "G7629A", "G7640A", "C7655T", "A7680G", "C7747T", "G7754A", "A7818G", "T7870A", "A7929T", "A7936G", "C7941A", "A7953G", "C7960A", "G7992A", "C8038T", "A8079G", "T8094G", "G8105A", "C8106G", "C8156T", "T8209C", "G8213A", "A8263C", "A8294C", "C8321T", "C8323A", "A8327G", "C8342T", "A8363G", "T8371A", "G8373A", "T8374A", "G8377A", "G8392A", "G8398A", "G8409A", "A8424G", "G8508A", "G8520A", "G8522A", "A8531C", "A8584T", "C8585T", "T8594C", "T8595C", "A8622C", "C8676T", "C8723T", "A8794C", "C8809A", "C8813T", "G8816A", "C8832T", "A8879G", "A8915T", "A8917C", "G8923A", "A8929G", "G8994A"], "RT-p51": ["Y121D", "E122K", "T135I", "T165I", "M245T", "K277R", "P294S", "V317A", "T376A"], "RT-p66": ["Y121D", "E122K", "T135I", "T165I", "M245T", "K277R", "P294S", "V317A", "T376A", "S468P", "Q520K"], "gp120": ["D19E", "Q54R", "E59Q", "T78E", "N102T", "-105N", "-106A", "-107N", "-109D", "T110S", "-112T", "-113N", "-114N", "-115D", "-116S", "-117K", "-118I", "-119E", "-120D", "-121M", "-122V", "-124G", "Y145Q", "Q155P", "G158D", "I243V", "N251D", "S263T", "E309A", "N311K", "R315E", "A318K", "I332L", "N335D", "G351R", "S365N", "T366S", "W367L", "-368F", "-370S", "-371S", "-372G", "-373E", "-374S", "-375D", "-376S", "-377T", "N379-", "D384-", "T385-", "N432A", "N434E", "N437S", "R472K"], "gp41": ["V7L", "R46K", "K56R", "V72L", "K77R", "N107T", "S109N", "D113N", "N126S", "A151T", "K172R", "H209L", "P213Q", "D217G", "G230D", "H259R", "I264S", "A268R", "V304I", "E320D", "N331H", "R342G"], "nef": ["I10K", "V11K", "G12E", "R17K", "R19K", "A23T", "K28E", "A56T", "A60T", "E62Q", "Y81F", "F85L", "K94Q", "E151A", "A156D", "L191F", "K192T", "R194K", "Q196R"], "p1": ["K10N"], "p17": ["S9R", "A15T", "Q117K", "A118T", "S124-", "K126G", "-127K"], "p2": ["V7A"], "p24": ["Q50G", "H87Q", "R203K"], "p6": ["S3G", "T22K"], "pro": ["I15L", "L63A"], "rev": ["A15G", "V16I", "K30E", "H82Q", "R86Q", "S103F"], "tat": ["A19P", "K24N", "V29I", "S61R", "S62D", "I74L", "Q76R", "Q78K", "T82A", "P84Q"], "vif": ["R19K", "V31I", "K41R", "H48N", "H56Q", "K92Q", "Q127E", "V128I", "V154I", "I159T", "K160R"], "vpr": ["E25D", "H40Q", "Q77R", "H78L", "I84T"], "vpu": ["L2T", "P3S", "H5Y", "V10I", "K31R", "L33V", "I42L", "I43V", "A50T"]}, "labels": {"aa": "RT-p51: Y121D, E122K, T135I, T165I, M245T, K277R, P294S, V317A, T376A; RT-p66: Y121D, E122K, T135I, T165I, M245T, K277R, P294S, V317A, T376A, S468P, Q520K; gp120: D19E, Q54R, E59Q, T78E, N102T, -105N, -106A, -107N, -109D, T110S, -112T, -113N, -114N, -115D, -116S, -117K, -118I, -119E, -120D, -121M, -122V, -124G, Y145Q, Q155P, G158D, I243V, N251D, S263T, E309A, N311K, R315E, A318K, I332L, N335D, G351R, S365N, T366S, W367L, -368F, -370S, -371S, -372G, -373E, -374S, -375D, -376S, -377T, N379-, D384-, T385-, N432A, N434E, N437S, R472K; gp41: V7L, R46K, K56R, V72L, K77R, N107T, S109N, D113N, N126S, A151T, K172R, H209L, P213Q, D217G, G230D, H259R, I264S, A268R, V304I, E320D, N331H, R342G; nef: I10K, V11K, G12E, R17K, R19K, A23T, K28E, A56T, A60T, E62Q, Y81F, F85L, K94Q, E151A, A156D, L191F, K192T, R194K, Q196R; p1: K10N; p17: S9R, A15T, Q117K, A118T, S124-, K126G, -127K; p2: V7A; p24: Q50G, H87Q, R203K; p6: S3G, T22K; pro: I15L, L63A; rev: A15G, V16I, K30E, H82Q, R86Q, S103F; tat: A19P, K24N, V29I, S61R, S62D, I74L, Q76R, Q78K, T82A, P84Q; vif: R19K, V31I, K41R, H48N, H56Q, K92Q, Q127E, V128I, V154I, I159T, K160R; vpr: E25D, H40Q, Q77R, H78L, I84T; vpu: L2T, P3S, H5Y, V10I, K31R, L33V, I42L, I43V, A50T"}}}, {"name": "CRF35_A1D_NODE_0000017", "node_attrs": {"div": 0.13088999999999998, "clade_membership": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A585G", "C586T", "T1175C", "A2422G", "C2715A", "G3671A", "A3866G", "A4384G", "T5462A", "A5480C", "G5692C", "A5701G", "G5702A", "T5727C", "T6171C", "A6182-", "C6184-", "A6185-", "-6207T", "G6220A", "A6276G", "-6968G", "-6969G", "C7006T", "C8051A", "A8076G", "A8701T"], "INT": ["I31V", "I203M"], "RT-p51": ["A207D"], "RT-p66": ["A207D", "V526I"], "gp120": ["N108-", "T110-", "N111-", "-120I", "-123T", "K141R", "N369-", "N378-", "-382G", "-383S"], "gp41": ["H258R"], "nef": ["Y120F"], "p17": ["T84V"], "rev": ["A68E"], "tat": ["V29K", "Q35P"], "vpu": ["E29Q", "R32E"]}, "labels": {"aa": "INT: I31V, I203M; RT-p51: A207D; RT-p66: A207D, V526I; gp120: N108-, T110-, N111-, -120I, -123T, K141R, N369-, N378-, -382G, -383S; gp41: H258R; nef: Y120F; p17: T84V; rev: A68E; tat: V29K, Q35P; vpu: E29Q, R32E"}}, "children": [{"name": "AB703609", "node_attrs": {"div": 0.15793, "accession": "AB703609", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "IR"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11IR.KSH24F"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["A354G", "T357C", "A398G", "C435A", "A488G", "A499G", "C537T", "G542A", "G562A", "A677G", "G696A", "A699C", "T771C", "G791A", "A815G", "T845C", "A873G", "A881T", "C902T", "G920A", "G980A", "G987A", "T1143C", "A1167T", "G1173T", "T1174C", "C1243T", "G1278A", "G1279A", "C1449A", "T1484C", "C1517T", "C1541T", "G1562A", "A1566C", "C1571A", "A1670G", "T1752C", "C1767A", "A1794G", "A1832C", "G1852A", "G1858A", "A1867C", "T1873C", "C1960T", "A1982G", "G2127A", "G2128A", "G2389T", "A2419G", "G2473A", "T2597C", "G2656A", "A2704G", "G2710A", "A2827C", "A2915G", "A2962G", "A2969G", "C2975A", "A3063G", "A3154G", "A3200G", "C3266T", "G3293A", "T3358C", "G3385A", "G3442A", "G3448A", "C3545T", "G3553A", "A3703G", "G3844A", "C3863G", "A3890T", "A3891G", "T3898C", "C4079T", "T4110C", "A4150C", "A4175G", "G4252A", "A4255G", "A4433G", "C4475A", "A4643G", "C4820T", "G4856A", "T4883C", "T4985C", "C5034T", "A5055G", "C5056T", "C5102T", "A5112G", "C5134T", "C5251T", "T5263C", "C5294T", "A5324G", "A5369G", "G5427A", "G5444A", "C5445T", "C5491T", "G5556A", "A5581G", "C5612T", "G5619A", "G5635A", "A5699G", "A5703C", "C5787A", "A5788T", "C5789T", "A5790G", "A5792C", "T5793A", "G5794A", "T5797C", "G5799T", "C5801T", "A5802G", "A5803G", "A5805G", "C5806A", "T5808G", "-5809G", "-5810G", "-5811G", "G5812-", "T5813-", "G5814-", "G5815-", "A5816-", "G5817-", "A5818-", "T5819-", "G5820-", "G5821-", "G5822-", "G5823-", "T5862C", "T5964C", "T5980G", "T5992C", "C6010T", "C6023T", "A6024T", "T6072C", "C6101T", "C6109T", "C6115T", "A6158C", "T6160C", "C6165G", "C6187T", "-6189A", "A6191G", "A6192G", "C6193A", "-6195G", "-6196G", "-6198G", "-6199A", "-6208A", "A6222C", "A6223T", "G6225A", "T6252C", "G6268A", "G6283T", "G6460T", "G6464A", "C6483T", "C6487T", "A6488G", "A6525G", "C6559T", "A6568G", "G6573A", "C6612T", "T6641A", "A6686-", "G6687-", "T6688-", "A6689-", "T6690-", "A6691-", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6745C", "A6753G", "C6769T", "A6775C", "C6781G", "C6807T", "A6848G", "A6858G", "-6966A", "A6978G", "A6981G", "C6984T", "A6986G", "G6990A", "C7008A", "C7020A", "A7063G", "A7120C", "A7155G", "A7157G", "G7158A", "T7159G", "C7160A", "A7161G", "G7162T", "A7163C", "T7165G", "C7250A", "G7269A", "G7276A", "G7285A", "G7322A", "A7427G", "T7432C", "T7444C", "A7447C", "A7470G", "G7477A", "A7507G", "G7519A", "A7523G", "A7533G", "A7573G", "A7589G", "C7597T", "C7623A", "C7624T", "C7655T", "A7714G", "C7723T", "G7729A", "A7732G", "C7762T", "A7852T", "T7913C", "G7965A", "A8029G", "A8032G", "G8053A", "T8103C", "A8118G", "G8133A", "A8143G", "G8144A", "T8171G", "T8209A", "A8264T", "G8392A", "T8485C", "-8487T", "-8488C", "-8489A", "A8493-", "A8494-", "T8495-", "C8496-", "A8497-", "C8510A", "A8533G", "A8536G", "G8554T", "A8576C", "C8585T", "A8770T", "G8793A", "A8794G", "G8818A", "A8827G", "T8847A", "T8867C", "G8875A", "A8915G", "A8954G", "G8955A"], "INT": ["P30A", "N39C", "V112A", "S134G", "I220V", "L234I"], "RT-p51": ["R11K", "I274V", "I292V", "P294T", "K323R", "T369A", "A400T"], "RT-p66": ["R11K", "I274V", "I292V", "P294T", "K323R", "T369A", "A400T"], "gp120": ["V3A", "V37A", "H57F", "V73A", "N102H", "T104S", "-119I", "-121T", "-122E", "-124E", "M133T", "K143N", "E202D", "E204K", "S210L", "K212E", "K224R", "G240E", "A253V", "S263T", "N272S", "S278G", "R280H", "A291T", "T292D", "D293A", "Q300R", "R307S", "A318V", "I332V", "N335S", "-380I", "-381N", "T385N", "P389Q", "N434S", "N435E", "E436S", "N437Q", "L466I", "R472K"], "gp41": ["V7M", "S42G", "K56R", "R74G", "K77R", "T96A", "R221K", "V267A", "E272G", "G281S", "L290V", "N302K", "I321L"], "nef": ["R17K", "H50-", "P51-", "S52-", "E64G", "E65G", "R71M", "Y143F", "E151S", "G159E", "N162S", "C169S", "R178K", "D205N"], "p17": ["I7V", "L34I", "E55G", "L68F", "R76K", "D121N", "T122P"], "p2": ["T8Q", "-10T", "-11N"], "p24": ["S14P", "T48A", "Q50H", "V86I", "S146C", "V148S", "G183N"], "p6": ["S25P", "Q30K", "T39A"], "p7": ["K34Q"], "pro": ["T12P", "I62V"], "rev": ["S61G", "T62A", "E69K", "R99E", "V108G"], "tat": ["S23N", "I69V", "E86K"], "vif": ["T157V", "K176E", "P183L"], "vpr": ["Q3R"], "vpu": ["P3S", "V10I", "K31R", "E32D"]}, "labels": {"aa": "INT: P30A, N39C, V112A, S134G, I220V, L234I; RT-p51: R11K, I274V, I292V, P294T, K323R, T369A, A400T; RT-p66: R11K, I274V, I292V, P294T, K323R, T369A, A400T; gp120: V3A, V37A, H57F, V73A, N102H, T104S, -119I, -121T, -122E, -124E, M133T, K143N, E202D, E204K, S210L, K212E, K224R, G240E, A253V, S263T, N272S, S278G, R280H, A291T, T292D, D293A, Q300R, R307S, A318V, I332V, N335S, -380I, -381N, T385N, P389Q, N434S, N435E, E436S, N437Q, L466I, R472K; gp41: V7M, S42G, K56R, R74G, K77R, T96A, R221K, V267A, E272G, G281S, L290V, N302K, I321L; nef: R17K, H50-, P51-, S52-, E64G, E65G, R71M, Y143F, E151S, G159E, N162S, C169S, R178K, D205N; p17: I7V, L34I, E55G, L68F, R76K, D121N, T122P; p2: T8Q, -10T, -11N; p24: S14P, T48A, Q50H, V86I, S146C, V148S, G183N; p6: S25P, Q30K, T39A; p7: K34Q; pro: T12P, I62V; rev: S61G, T62A, E69K, R99E, V108G; tat: S23N, I69V, E86K; vif: T157V, K176E, P183L; vpr: Q3R; vpu: P3S, V10I, K31R, E32D"}}}, {"name": "AB703611", "node_attrs": {"div": 0.15282999999999997, "accession": "AB703611", "clade_membership": {"value": "CRF35_A1D"}, "country": {"value": "IR"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11IR.KSH29F"}, "LANL_subtype": {"value": "CRF35_A1D"}}, "branch_attrs": {"mutations": {"nuc": ["G452A", "C471G", "A480G", "A495G", "A576G", "C596T", "T763C", "C765T", "T774A", "T852A", "G903A", "G1123A", "C1214T", "G1242A", "G1302A", "A1350G", "T1444C", "G1498A", "A1500T", "A1588G", "A1642G", "G1857A", "A1969G", "A2002G", "A2023G", "A2038C", "C2071T", "G2074A", "A2260C", "G2363A", "T2456C", "T2467C", "T2521C", "A2592G", "A2630G", "G2686A", "A2842G", "G2902A", "G3168A", "T3170G", "T3175C", "G3205A", "G3206T", "A3340G", "C3346T", "G3427C", "G3463A", "T3493G", "A3675G", "G3701A", "C3754T", "G3836A", "C3843T", "G3989A", "A4114T", "C4129T", "G4145T", "G4243A", "C4412T", "T4444C", "A4525G", "G4549A", "T4697G", "G4701A", "T4702G", "G4735A", "C4803A", "A4817G", "C4820A", "G4971A", "G4986A", "A4988C", "A5122G", "G5185A", "G5212A", "T5281C", "G5299A", "G5308A", "C5342T", "G5361A", "G5448T", "G5463A", "T5483C", "C5508A", "G5561A", "A5576G", "C5578T", "C5584T", "T5614C", "C5620G", "G5628T", "T5704G", "T5705A", "G5725A", "A5831G", "G5864C", "A5867G", "T5871C", "G5872T", "C5911T", "A5914C", "G5917A", "C5989T", "A6065G", "A6066G", "A6186-", "C6187-", "A6188-", "C6190-", "A6191-", "C6193T", "-6195A", "-6196A", "A6197C", "-6198A", "-6199T", "-6201T", "-6202C", "-6203G", "-6204G", "-6205G", "-6208C", "A6221-", "A6222-", "A6223-", "G6224-", "G6225-", "A6226-", "G6227-", "A6228-", "A6229-", "A6230G", "T6328C", "A6335-", "G6336-", "T6337-", "T6347G", "T6355C", "A6376C", "C6412T", "A6478C", "T6482A", "C6660T", "A6685C", "C6717T", "G6779A", "A6786C", "G6798A", "C6838T", "A6839G", "A6840G", "A6857C", "A6931G", "C6937T", "A6962G", "-6966C", "-6974A", "G6977-", "A6986C", "A6992C", "C7088A", "G7089A", "T7147G", "A7148G", "A7149T", "T7156C", "T7159C", "A7189G", "G7190A", "A7237G", "T7309A", "G7366A", "G7373A", "C7429T", "G7440A", "A7622T", "A7628G", "T7630A", "C7645T", "A7688G", "G7709C", "T7715G", "G7720A", "A7721T", "A7741G", "G7754A", "A7763C", "C7801A", "A7886C", "G7943A", "T8007C", "T8008G", "C8047T", "C8063A", "C8065T", "C8080A", "T8094C", "G8170A", "C8221T", "T8276A", "T8371A", "A8408G", "T8411C", "A8469G", "A8591G", "T8594C", "A8688C", "C8699A", "A8719G", "A8805G", "G8814A", "A8874G", "G8905A", "A8912C", "C8927T"], "INT": ["A21T", "A23V", "V72I", "A124S"], "RT-p51": ["V90I", "Y121H", "K166R", "I179V", "R358K", "S359A", "V371L"], "RT-p66": ["V90I", "Y121H", "K166R", "I179V", "R358K", "S359A", "V371L", "E527G", "V536I"], "gp120": ["E4Q", "N5D", "L6S", "K71G", "-119S", "-121N", "-122I", "I126V", "S161-", "L165V", "S210T", "T269I", "A288V", "E309N", "N311T", "R315K", "K329G", "N335H", "-380V", "-381T", "R412K", "N432V", "N435S", "E436Q", "D446N"], "gp41": ["V24M", "R46K", "N107S", "N129D", "E136Q", "S138A", "N140Y", "A151T", "K154Q", "N166K", "N195H", "G214R", "I235T", "L254I", "H259Q", "I264T", "F325I"], "nef": ["I10K", "I43V", "N116H", "K155E", "E158K", "R178G", "R188H"], "p1": ["K4R"], "p17": ["L46V", "S49G", "T54A", "T81A"], "p2": ["V7A"], "p24": ["I11T", "H12Y", "L15M", "S41T", "V58I", "R131K", "V171T", "V191I", "T207A"], "p7": ["R11K", "I12F", "K41R"], "pro": ["R20K"], "rev": ["K14R", "V16I", "R32K", "S54A", "P67S", "P72H", "L73F", "L78I", "V108I"], "tat": ["K24N", "V36A", "S62N", "P68S", "P70S"], "vif": ["V39S", "R50K", "H73N", "D78E", "V129I", "E134N", "K179R"], "vpr": ["G86R"], "vpu": ["H5D", "W7C", "L33E", "D40N", "D75G"]}, "labels": {"aa": "INT: A21T, A23V, V72I, A124S; RT-p51: V90I, Y121H, K166R, I179V, R358K, S359A, V371L; RT-p66: V90I, Y121H, K166R, I179V, R358K, S359A, V371L, E527G, V536I; gp120: E4Q, N5D, L6S, K71G, -119S, -121N, -122I, I126V, S161-, L165V, S210T, T269I, A288V, E309N, N311T, R315K, K329G, N335H, -380V, -381T, R412K, N432V, N435S, E436Q, D446N; gp41: V24M, R46K, N107S, N129D, E136Q, S138A, N140Y, A151T, K154Q, N166K, N195H, G214R, I235T, L254I, H259Q, I264T, F325I; nef: I10K, I43V, N116H, K155E, E158K, R178G, R188H; p1: K4R; p17: L46V, S49G, T54A, T81A; p2: V7A; p24: I11T, H12Y, L15M, S41T, V58I, R131K, V171T, V191I, T207A; p7: R11K, I12F, K41R; pro: R20K; rev: K14R, V16I, R32K, S54A, P67S, P72H, L73F, L78I, V108I; tat: K24N, V36A, S62N, P68S, P70S; vif: V39S, R50K, H73N, D78E, V129I, E134N, K179R; vpr: G86R; vpu: H5D, W7C, L33E, D40N, D75G"}}}]}]}]}]}]}]}]}, {"name": "results/subtype_trees/A1.nwk", "node_attrs": {"div": 0.08453999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G706A", "-713C", "-714A", "A1089G", "T1752C", "T1787C", "A2524G", "A2727G", "A2728C", "C2909G", "G3264A", "A3675G", "A3755T", "A4195G", "C5611T", "C5924T", "C6193T", "-6202C", "G6575A", "G6631A", "T6637C", "-6995G", "-6996A", "-6997G", "G7168A", "C7313A", "T8498C", "T8597G", "C9108-"], "RT-p51": ["K211S", "T369A", "R390K"], "RT-p66": ["K211S", "T369A", "R390K", "E527G"], "gp120": ["E241K", "K323E", "-380T", "-383N"], "gp41": ["L4I", "M54L"], "nef": ["F85L"], "p17": ["S124N"], "p6": ["S14I"]}, "labels": {"aa": "RT-p51: K211S, T369A, R390K; RT-p66: K211S, T369A, R390K, E527G; gp120: E241K, K323E, -380T, -383N; gp41: L4I, M54L; nef: F85L; p17: S124N; p6: S14I", "clade": "A1"}}, "children": [{"name": "A1_NODE_0000001", "node_attrs": {"div": 0.08460999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T771G", "C6148T", "-6165G"]}}, "children": [{"name": "A1_NODE_0000002", "node_attrs": {"div": 0.08746, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A301T", "A2350G", "A2734G", "A2969G", "A3715G", "G3836A", "T3994C", "T4982G", "T5787C", "C6183A", "-6206A", "C6278A", "A6635G", "A6821G", "-6977A", "-6979A", "A7160G", "C7164A", "C7801T", "G8522A", "A9134G"], "INT": ["A21T"], "RT-p51": ["I292V"], "RT-p66": ["I292V"], "gp120": ["Q142K", "K312N"], "gp41": ["N133S"], "rev": ["R14T", "A68E"], "tat": ["R57G"], "vpu": ["V10I"]}, "labels": {"aa": "INT: A21T; RT-p51: I292V; RT-p66: I292V; gp120: Q142K, K312N; gp41: N133S; rev: R14T, A68E; tat: R57G; vpu: V10I"}}, "children": [{"name": "A1_NODE_0000003", "node_attrs": {"div": 0.09344999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "A412G", "G428A", "G607A", "C765T", "T774G", "C1243T", "A1743G", "A1783C", "C1903T", "G2134A", "G2389A", "A2519G", "C2797A", "C3394T", "T3757C", "G4078A", "T4799A", "T5078A", "T5162C", "G5185A", "G5385A", "A5547C", "G5556A", "A5649G", "C5659A", "T5731C", "G5737A", "-5824A", "A6023C", "C6166T", "A6168-", "-6196C", "-6204A", "-6205C", "-6209A", "-6213T", "-6220G", 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L15V, T171I; p6: Q35P, P36S; rev: E11A, V108T; tat: P73S; vpr: E25D, G94S; vpu: T2S, L18I, T63E"}}, "children": [{"name": "AB287379", "node_attrs": {"div": 0.1295, "accession": "AB287379", "clade_membership": {"value": "A1"}, "country": {"value": "RW"}, "date": {"value": 1993.0}, "Strain_name": {"value": "93RW037A"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T12C", "C23A", "C48T", "G121A", "T163A", "-304G", "-305A", "C362A", "G394A", "T396C", "G518T", "G524A", "C531T", "A566G", "T571A", "G608C", "A654C", "A674G", "A675C", "A676G", "A715C", "G716A", "A724G", "C773A", "G803A", "G822T", "T824C", "C830T", "C897T", "A914C", "T978G", "T992G", "A1017T", "T1052C", "A1079G", "A1097T", "A1145G", "T1175C", "A1188G", "A1259G", "T1296C", "A1359T", "A1367G", "T1451G", "G1487A", "A1529G", "T1574C", "C1610T", "A1673G", "A1694G", "A1719C", "-1785A", "-1786C", "T1791G", "T1792C", "G1794A", "A1839G", "A1932G", "G1963A", "A1968G", "A2127C", "C2211T", "A2212G", "C2335T", 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"A6978C", "-6981G", "-6982T", "-6994A", "G6997A", "-6998T", "A7057G", "T7059C", "G7072A", "C7088G", "T7107G", "A7108C", "A7148G", "A7149T", "C7156T", "A7158C", "T7159A", "A7161T", "G7190A", "C7201T", "T7217C", "G7225A", "G7276A", "A7313C", "A7315G", "G7428A", "G7459A", "A7505C", "A7549G", "G7631A", "A7669G", "A7701G", "T7715G", "G7729A", "G7759C", "A7773G", "T7801A", "A7937G", "G7943A", "G7962A", "A7977G", "A8011C", "C8051A", "G8079T", "G8087A", "A8143G", "T8159G", "T8164C", "C8165A", "T8166C", "T8196A", "A8204G", "T8209C", "C8213T", "A8227T", "G8234A", "G8255A", "A8264C", "G8317A", "G8335A", "T8366A", "A8459G", "C8471A", "C8477T", "A8482C", "A8484G", "T8485C", "G8561A", "T8595C", "A8666G", "C8684A", "G8738A", "A8794G", "A8806G", "G8870T", "A8873C", "A8880G", "C8881T", "A8882C", "A8886C", "T8887A", "A8892C", "A8893G", "A8924G", "C8937T", "A8965G", "G8977A", "A8978C", "C8979A", "A9048C", "T9097C", "C9133T"], "INT": ["K7R", "E11D", "R14K", "L28I", "I31V", "V37I", "A91G", "L101I", "E167D", "Q221H", "N222K", "I234V"], "RT-p51": ["K11T", "T39M", "S173L", "T200A", "E204D", "T294P", "A327V", "K390R", "V435I"], "RT-p66": ["K11T", "T39M", "S173L", "T200A", "E204D", "T294P", "A327V", "K390R", "V435I", "K454R", "K465R", "H483L", "E492A", "Q507H", "Q520N"], "gp120": ["A3V", "N102D", "T104H", "-105K", "-106Y", "-107N", "N108S", "-109T", "T110Y", "-111N", "-112G", "-113T", "-114N", "-117V", "-120R", "-121E", "-122E", "E125-", "M133I", "V144E", "Y145H", "K150R", "V153I", "N159S", "N160S", "D202E", "K203I", "V227I", "E240Q", "V242I", "Q243R", "D251N", "N261V", "E262Q", "K265E", "K277R", "D294K", "T308A", "E309K", "N312D", "Q315R", "K316E", "K319T", "H324Y", "-326K", "N334D", "N335K", "-368T", "T371-", "-379S", "-382S", "V402A", "M406I", "Q412E", "V418S", "N432V", "N435T", "T436V", "D446N"], "gp41": ["I4L", "S42N", "E110K", "S138A", "L152F", "N157S", "N166K", "N212D", "G220E", "E225G", "R259L", "D262N", "L277Q", "W286G", "L288T", "I301V", "L304F", "V311I", "V318I", "I321L", "L340F"], "nef": ["S8R", "N47T", "I48-", "N49-", "H50A", "P51N", "S52H", "-53P", "-54S", "E151G", "K155R", "E176D", "E177D", "T180V", "M182Q", "K184R", "R194M", "H199Y"], "p17": ["S9R", "R20Q", "M61I", "P66S", "F79Y", "R91H", "I107L", "K114R", "K127T", "Q130R"], "p24": ["H12Y", "A31S", "L83V", "H87Q", "M96L", "I153V", "T210S"], "p6": ["I14L", "T22A", "S36T", "L38P", "V39A"], "pro": ["K14R", "K45R", "K57R"], "rev": ["T14K", "K30R", "I55L", "R80K", "R99G", "V104G", "S106H", "T108A", "N116K"], "tat": ["D2E", "S61G", "I69V", "E85K"], "vif": ["V31I", "K36N", "G37N", "K50R", "K77R", "H83N", "L102M", "R132S", "A137T", "T159R", "K160R", "T170A", "P183H"], "vpr": ["H45Y", "I46V", "I61V", "I83T", "R85P", "G86R", "V89G", "S93T"], "vpu": ["I10A", "E44N", "E63K", "-69N", "-70Y", "-71D", "-72L", "-73G", "-79N"]}, "labels": {"aa": "INT: K7R, E11D, R14K, L28I, I31V, V37I, A91G, L101I, E167D, Q221H, N222K, I234V; RT-p51: K11T, T39M, S173L, T200A, E204D, T294P, A327V, K390R, V435I; RT-p66: K11T, T39M, S173L, T200A, E204D, T294P, A327V, K390R, V435I, K454R, K465R, H483L, E492A, Q507H, Q520N; gp120: A3V, N102D, T104H, -105K, -106Y, -107N, N108S, -109T, T110Y, -111N, -112G, -113T, -114N, -117V, -120R, -121E, -122E, E125-, M133I, V144E, Y145H, K150R, V153I, N159S, N160S, D202E, K203I, V227I, E240Q, V242I, Q243R, D251N, N261V, E262Q, K265E, K277R, D294K, T308A, E309K, N312D, Q315R, K316E, K319T, H324Y, -326K, N334D, N335K, -368T, T371-, -379S, -382S, V402A, M406I, Q412E, V418S, N432V, N435T, T436V, D446N; gp41: I4L, S42N, E110K, S138A, L152F, N157S, N166K, N212D, G220E, E225G, R259L, D262N, L277Q, W286G, L288T, I301V, L304F, V311I, V318I, I321L, L340F; nef: S8R, N47T, I48-, N49-, H50A, P51N, S52H, -53P, -54S, E151G, K155R, E176D, E177D, T180V, M182Q, K184R, R194M, H199Y; p17: S9R, R20Q, M61I, P66S, F79Y, R91H, I107L, K114R, K127T, Q130R; p24: H12Y, A31S, L83V, H87Q, M96L, I153V, T210S; p6: I14L, T22A, S36T, L38P, V39A; pro: K14R, K45R, K57R; rev: T14K, K30R, I55L, R80K, R99G, V104G, S106H, T108A, N116K; tat: D2E, S61G, I69V, E85K; vif: V31I, K36N, G37N, K50R, K77R, H83N, L102M, R132S, A137T, T159R, K160R, T170A, P183H; vpr: H45Y, I46V, I61V, I83T, R85P, G86R, V89G, S93T; vpu: I10A, E44N, E63K, -69N, -70Y, -71D, -72L, -73G, -79N"}}}, {"name": "A1_NODE_0000004", "node_attrs": {"div": 0.09761999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T662A", "A776G", "C1295T", "A1592G", "T1682C", "G2951A", "G3630A", "A3637C", "T5292C", "A5305G", "G5493A", "A5494C", "G5635A", "T5791G", "A5794G", "A6112G", "-6218G", "T6246A", "A6329G", "G6464A", "A6575G", "C6641G", "A6714G", "C6752A", "T6952C", "-6973T", "-6974A", "T6988C", "T7702G", "C8047T", "C8323T", "A8409G", "G8508A", "A8558G", "C8812A", "C9078T", "C9113T", "G9120A"], "RT-p51": ["A286T"], "RT-p66": ["A286T", "R512K", "E514D"], "gp120": ["-114S", "-124G", "F131Y", "K203A", "E204K", "K241G", "N261D", "P263A", "Q287R"], "gp41": ["S133K"], "nef": ["T23A", "A56T", "T157N"], "p17": ["N109K"], "rev": ["P67S"], "tat": ["N40R"], "vpr": ["I63T"], "vpu": ["S62D", "V65A", "-69V"]}, "labels": {"aa": "RT-p51: A286T; RT-p66: A286T, R512K, E514D; gp120: -114S, -124G, F131Y, K203A, E204K, K241G, N261D, P263A, Q287R; gp41: S133K; nef: T23A, A56T, T157N; p17: N109K; rev: P67S; tat: N40R; vpr: I63T; vpu: S62D, V65A, -69V"}}, "children": [{"name": "MT942708", "node_attrs": {"div": 0.14056999999999997, "accession": "MT942708", "clade_membership": {"value": "A1"}, "country": {"value": "RW"}, "date": {"value": 2005.0}, "Strain_name": {"value": "R53F_175005_2"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C150T", "C201T", "-304G", "-305A", "C362T", "T377G", "A388G", "C393A", "A461C", "G498A", "A499T", "G542T", "A557G", "C558A", "A584C", "C588A", "T596C", "A619G", "C636T", "A644G", "A666C", "G667A", "C668T", "A711G", "A714C", "A715C", "G716C", "A762G", "T765C", "T788C", "G837A", "A881G", "T892C", "G893A", "C902T", "G908A", "G1016A", "A1025G", "C1061A", "A1074G", "T1100C", "A1226G", "A1242G", "T1243C", "C1247T", "A1263T", "A1265G", "G1271T", "A1292C", "G1328A", "T1329A", "A1350T", "A1361C", "A1364G", "G1472A", "T1482A", "T1483A", "T1502C", "C1535T", "A1538G", "C1598T", "T1646C", "T1749C", "G1760A", "A1771G", "C1783A", "-1785G", "-1786G", "A1894T", "A1927G", "T1954C", "T1957C", "G1972A", "T1978G", "T1986C", "A2002G", "A2020T", "A2023C", "T2077C", "A2197G", "A2210G", "G2215C", "T2236C", "A2241G", "C2326T", "A2422G", "T2449C", "G2463A", "C2503T", "G2530A", "A2601G", "A2641G", "A2674G", "A2693G", "G2714A", "T2735C", "T2737G", "A2788T", "C2795T", "G2830T", "A2936C", "A2937G", "C2941T", "C2944T", "G2947A", "C2953A", "A2959C", "A2989G", "A3109G", "A3130C", "A3151G", "G3162A", "G3168A", "A3193G", "G3200A", "C3232T", "C3307T", "T3355G", "A3538T", "A3543T", "C3545T", "A3571G", "T3644A", "A3658C", "G3667A", "A3685G", "T3742C", "G3787A", "A3808C", "G3816A", "T3829C", "T3865C", "G3877A", "C3940T", "C4021A", "A4057G", "G4109A", "C4138T", "G4151T", "A4156G", "A4178G", "A4185C", "G4195A", "G4228A", "A4423C", "T4450C", "T4537C", "G4622A", "G4642A", "A4646T", "A4694C", "T4697G", "C4724T", "C4761T", "T4805C", "C4826A", "G4887A", "C4911A", "T4959G", "T4991C", "A5015G", "G5060A", "G5086A", "T5102C", "G5140A", "C5162T", "T5228C", "A5233G", "A5352C", "G5361A", "C5372A", "A5431G", "G5444C", "C5445T", "C5454T", "A5461G", "A5462T", "A5480C", "T5483C", "C5511T", "G5534A", "C5547A", "A5556C", "A5557G", "C5579T", "C5584T", "T5602G", "C5614T", "G5619A", "C5625T", "T5628G", "A5634C", "G5639C", "G5643A", "G5644A", "G5649A", "C5663T", "A5680C", "A5709T", "A5722G", "C5787T", "C5792A", "A5793T", "T5799G", "T5801C", "G5802A", "G5803A", "A5806C", "G5808T", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "C5826T", "G5838T", "A5843T", "A5848G", "T5850G", "G5853A", "G5856A", "C5859T", "C5869G", "C5884G", "A5908G", "T5911C", "T5968C", "A6022G", "A6024T", "G6029A", "A6086G", "C6087A", "T6091C", "C6097T", "A6132C", "T6148C", "T6151C", "A6176-", "C6181-", "A6183G", "A6185G", "C6189T", "A6191C", "A6192G", "-6195G", "-6198G", "-6199C", "-6201A", "-6203G", "A6204G", "-6207T", "-6208C", "-6210A", "-6211C", "-6214A", "-6215A", "-6216G", "-6217C", "-6219A", "A6221G", "A6248G", "G6267T", "G6268A", "G6303A", "A6318C", "T6322G", "T6331G", "A6335G", "T6337G", "A6338C", "G6339A", "T6340G", "C6364A", "T6382C", "G6451A", "T6457G", "A6461G", "C6477A", "G6533A", "A6576G", "G6577T", "A6581C", "C6618A", "C6632T", "T6658C", "A6679C", "A6682G", "A6683G", "A6718G", "C6721T", "T6722G", "A6723C", "G6725A", "A6728G", "C6729G", "A6730T", "T6733C", "A6737G", "G6743A", "A6751G", "A6753G", "A6754G", "C6758T", "A6773G", "C6777A", "A6781G", "A6785T", "T6787C", "A6788C", "T6793A", "C6807T", "C6812A", "A6818C", "G6819A", "G6821T", "A6822T", "C6826A", "T6827C", "T6828C", "T6829C", "-6830G", "-6831A", "-6832C", "A6833T", "A6834T", "C6855A", "A6858G", "C6885T", "A6886G", "C6919T", "A6944C", "-6956G", "-6957T", "-6958A", "-6962G", "-6963G", "-6966C", "-6967T", "-6968G", "-6970G", "-6975T", "-6976A", "A6977C", "-6981T", "-6982G", "-6983G", "-6984C", "A6989T", "G6990T", "-6994A", "A6996G", "-6998A", "C6999T", "G7056A", "A7089G", "T7144G", "A7148C", "T7150G", "A7152G", "A7161G", "G7190A", "A7237G", "A7240G", "A7258G", "G7269A", "A7294G", "G7477A", "A7504G", "C7603T", "T7615C", "T7622A", "T7642G", "G7688C", "C7690A", "A7700G", "G7735A", "A7750G", "G7790A", "C7940T", "T7950C", "A7977G", "A7996C", "A8011C", "C8051A", "A8099G", "G8170A", "T8206C", "G8254A", "C8291-", "T8292-", "C8293-", "C8294-", "A8295-", "C8296-", "A8297-", "T8298-", "A8299-", "C8300-", "C8301-", "T8302-", "G8304T", "C8315T", "T8321G", "A8327G", "C8336G", "T8337G", "G8388A", "T8414C", "A8441G", "A8459C", "A8465G", "A8469G", "A8531T", "G8554A", "G8590C", "T8595G", "T8640C", "A8660G", "C8676T", "T8740C", "A8746T", "A8762G", "G8795A", "A8797C", "A8852G", "A8916C", "T8923G", "G8955A", "A9026G"], "INT": ["E11D", "R14K", "V112I", "V126F", "I135V", "Q137P", "Q216H", "G283S"], "RT-p51": ["T39A", "E40D", "K49R", "S123N", "E169G", "T200A", "A207T", "F214L", "Q245H", "K281R", "R356K", "R358K", "A369T"], "RT-p66": ["T39A", "E40D", "K49R", "S123N", "E169G", "T200A", "A207T", "F214L", "Q245H", "K281R", "R356K", "R358K", "A369T", "H483L", "L517I"], "gp120": ["S1N", "A2V", "N5K", "I56M", "H57L", "E59K", "T78E", "K93T", "T104-", "N108-", "T110-", "T116D", "-117I", "D118R", "M119S", "-120S", "-121M", "-122E", "N132D", "R138I", "Q155P", "I156M", "N159E", "N160S", "N161G", "S162Q", "T208K", "V227I", "T255N", "L260F", "K277E", "D294G", "D297N", "Q300R", "H302Y", "R307G", "T308K", "N311Y", "N312Q", "A318V", "Q320K", "R322Q", "E323L", "H324Q", "F325P", "-326D", "N327L", "-328N", "N335S", "T344M", "N364H", "-368K", "-379F", "E381G", "-382I", "R401K", "Q412R", "V418I", "N432Q", "N433S", "T436G", "D446N", "R472K"], "gp41": ["S107T", "D113E", "D129Q", "K133E", "D163N", "P213S", "R214G", "L216P", "E225G", "R231S", "I266V", "N298I", "L330I", "H331-", "I332-", "P333-", "R334-", "Q338*", "L340V", "R342G", "L345G"], "nef": ["V16I", "K39N", "I43V", "E63D", "R71K", "G83A", "L85V", "I133T", "Y135F", "E152A", "K192Q", "D205N"], "p17": ["D14E", "K18R", "E42D", "E55I", "K69N", "L75I", "L85I", "R91Q", "K95R", "S111H", "S126G", "K127P"], "p24": ["I11V", "V36I", "M54T", "I115V", "I171A", "T178S", "E180D", "E187D", "S200T", "T207S"], "p6": ["T22A", "S23P", "K31R", "P35Q", "S36G"], "p7": ["F6N"], "pro": ["D60E", "L63P"], "rev": ["D7N", "A11E", "P31L", "K32R", "I55L", "D84G"], "tat": ["T19A", "N23T", "K29V", "Q35P", "V36A", "R40H", "R53K", "Q60H", "S61G", "P68L", "P70S", "S81P"], "vif": ["R19K", "K36N", "H80Q", "D101N", "L109M", "L125V", "R167K", "G185E"], "vpr": ["I83L", "G86R"], "vpu": ["P3S", "C7W", "G11A", "V13I", "A19V", "I25L", "I39V", "E44K", "E60D", "L61T", "E66K", "M67L", "G68-", "-70E", "-71M", "-72G", "-73N", "-74Y", "-75D", "-76L", "-77G", "-79V", "N81E"]}, "labels": {"aa": "INT: E11D, R14K, V112I, V126F, I135V, Q137P, Q216H, G283S; RT-p51: T39A, E40D, K49R, S123N, E169G, T200A, A207T, F214L, Q245H, K281R, R356K, R358K, A369T; RT-p66: T39A, E40D, K49R, S123N, E169G, T200A, A207T, F214L, Q245H, K281R, R356K, R358K, A369T, H483L, L517I; gp120: S1N, A2V, N5K, I56M, H57L, E59K, T78E, K93T, T104-, N108-, T110-, T116D, -117I, D118R, M119S, -120S, -121M, -122E, N132D, R138I, Q155P, I156M, N159E, N160S, N161G, S162Q, T208K, V227I, T255N, L260F, K277E, D294G, D297N, Q300R, H302Y, R307G, T308K, N311Y, N312Q, A318V, Q320K, R322Q, E323L, H324Q, F325P, -326D, N327L, -328N, N335S, T344M, N364H, -368K, -379F, E381G, -382I, R401K, Q412R, V418I, N432Q, N433S, T436G, D446N, R472K; gp41: S107T, D113E, D129Q, K133E, D163N, P213S, R214G, L216P, E225G, R231S, I266V, N298I, L330I, H331-, I332-, P333-, R334-, Q338*, L340V, R342G, L345G; nef: V16I, K39N, I43V, E63D, R71K, G83A, L85V, I133T, Y135F, E152A, K192Q, D205N; p17: D14E, K18R, E42D, E55I, K69N, L75I, L85I, R91Q, K95R, S111H, S126G, K127P; p24: I11V, V36I, M54T, I115V, I171A, T178S, E180D, E187D, S200T, T207S; p6: T22A, S23P, K31R, P35Q, S36G; p7: F6N; pro: D60E, L63P; rev: D7N, A11E, P31L, K32R, I55L, D84G; tat: T19A, N23T, K29V, Q35P, V36A, R40H, R53K, Q60H, S61G, P68L, P70S, S81P; vif: R19K, K36N, H80Q, D101N, L109M, L125V, R167K, G185E; vpr: I83L, G86R; vpu: P3S, C7W, G11A, V13I, A19V, I25L, I39V, E44K, E60D, L61T, E66K, M67L, G68-, -70E, -71M, -72G, -73N, -74Y, -75D, -76L, -77G, -79V, N81E"}}}, {"name": "A1_NODE_0000005", "node_attrs": {"div": 0.10372999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C467T", "A562G", "C606A", "G709A", "G774A", "G998A", "T1182C", "G1199A", "G1302A", "C1385T", "G1404A", "G1498A", "G1657A", "G2566A", "C2828A", "G2878A", "A3043G", "C3100A", "T3112C", "G3166A", "A3280G", "T3577C", "G3718A", "A4397T", "C4652T", "G4695A", "G5059A", "A5191G", "G5376A", "G5418A", "A5495G", "C5551T", "C5554T", "T5611A", "G5652A", "C5789T", "A5790G", "T5834A", "T5956C", "G5965A", "-6173A", "-6175C", "-6179G", "-6180T", "G6481A", "A6648C", "A6669G", "G6774A", "A6818G", "G6935A", "-6962A", "-6963A", "-6968T", "C7020A", "G7101A", "T7159C", "G7459A", "C7651T", "G7657A", "G8050A", "T8167C", "T8182G", "A8194G", "T8196A", "C8213G", "A8701T", "T8915C"], "INT": ["I208L"], "RT-p51": ["D335E"], "RT-p66": ["D335E"], "gp120": ["R307K", "R322G", "N334T"], "gp41": ["L304V"], "nef": ["Y120F"], "p1": ["S9N"], "p17": ["K76R", "S125N"], "p24": ["H12Y", "V15M", "V191I", "G225S"], "p7": ["R11K"], "rev": ["E68T", "S112A", "N116E"], "tat": ["N23S", "P59S"], "vif": ["R158K"], "vpr": ["D91N"]}, "labels": {"aa": "INT: I208L; RT-p51: D335E; RT-p66: D335E; gp120: R307K, R322G, N334T; gp41: L304V; nef: Y120F; p1: S9N; p17: K76R, S125N; p24: H12Y, V15M, V191I, G225S; p7: R11K; rev: E68T, S112A, N116E; tat: N23S, P59S; vif: R158K; vpr: D91N"}}, "children": [{"name": "MT942915", "node_attrs": {"div": 0.15209999999999999, "accession": "MT942915", "clade_membership": {"value": "A1"}, "country": {"value": "RW"}, "date": {"value": 2010.0}, "Strain_name": {"value": "R3469F_175090_1"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T163A", "A224G", "T227C", "A269G", "T301A", "A303-", "A353G", "A369C", "A370G", "A378G", "A411C", "G413C", "A492T", "A509G", "G518A", "A556G", "C558T", "T571A", "A599G", "T614G", "A617G", "C623T", "T635C", "A662G", "C668T", "A680G", "A714C", "G791A", "G803A", "T808C", "A820G", "A842T", "T861G", "C917T", "A938G", "T978C", "A1002G", "T1003C", "A1017C", "C1040T", "T1055C", "A1079G", "C1115A", "C1187T", "A1188G", "C1220T", "A1226G", "A1263T", "G1271C", "T1295A", "T1344C", "A1350G", "A1359T", "A1433C", "T1444C", "C1446A", "A1448C", "A1499G", "A1546G", "A1580G", "G1586A", "G1589A", "C1610T", "G1619A", "A1642G", "A1719C", "T1741C", "A1742G", "G1743A", "-1746T", "-1747C", "-1748C", "C1756T", "G1773A", "A1776G", "-1785A", "-1786G", "A1819G", "A1846G", "A1900G", "A1927G", "A1968G", "A1982G", "A1988C", "A2014T", "T2080C", "A2127C", "A2230G", "T2236C", "A2239G", "A2241G", "A2243G", "A2254G", "A2275G", "C2296T", "G2332A", "C2353T", "A2482G", "C2499T", "G2519A", "C2521T", "T2542C", "A2617G", "C2644T", "C2653T", "A2722G", "T2737G", "A2797G", "A2839T", "C2857T", "G2869A", "C2885T", "T2890C", "G2914T", "A2925G", "G2932A", "C2942A", "C2944T", "C2960T", "T2968G", "C2978A", "A3096T", "A3142G", "A3179T", "A3192G", "C3201T", "T3225C", "G3226A", "A3264G", "A3283G", "A3361G", "T3380C", "T3394C", "T3433C", "T3436C", "A3460T", "C3475T", "C3499T", "C3533T", "C3541A", "C3542G", "G3556A", "C3589T", "G3643A", "A3646G", "A3655G", "G3664A", "G3679A", "A3684G", "A3685G", "G3715A", "C3763T", "A3775G", "G3796A", "A3835G", "A3836G", "T3847C", "A3907G", "T3943C", "G3952A", "G4060A", "G4063A", "A4102T", "A4107G", "G4112A", "C4141T", "A4175G", "C4180A", "G4243A", "A4293G", "G4294A", "C4381T", "C4428T", "A4644G", "T4674C", "T4697A", "T4793C", "T4805G", "C4820A", "C4914T", "A4967C", "A4988C", "G4995T", "A5015C", "A5048G", "A5049G", "C5050A", "C5056A", "G5087T", "T5102C", "A5119G", "T5179C", "C5186A", "T5197A", "G5212A", "A5233G", "A5278G", "A5285G", "G5386A", "G5427A", "A5431G", "A5447C", "A5462G", "A5480C", "C5536T", "A5537C", "G5538C", "A5548C", "A5555C", "A5587G", "C5612A", "C5614T", "T5628G", "G5629T", "C5653G", "T5654G", "G5687C", "A5699G", "A5718G", "T5736A", "A5737G", "G5739A", "G5755A", "C5792A", "A5793T", "C5797T", "T5799G", "T5801C", "G5802A", "G5803A", "G5805A", "A5806C", "G5808T", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5827A", "A5843T", "C5859T", "A5866T", "C5884T", "C5887T", "A5908G", "A5947G", "C5989T", "T6025A", "G6044A", "G6046T", "A6050G", "C6067A", "A6103C", "C6109T", "A6119C", "A6158G", "T6160G", "-6174A", "A6176C", "-6177A", "-6178C", "A6183C", "C6187T", "-6195G", "-6198C", "-6199A", "-6201C", "-6203A", "C6205T", "-6207G", "-6208C", "-6210C", "-6211A", "T6213C", "-6214C", "-6215G", "-6216G", "-6217A", "-6219A", "A6223T", "A6226G", "A6273G", "A6276G", "G6303A", "A6316G", "A6320C", "A6323G", "A6327G", "A6332G", "G6333C", "G6336A", "T6340C", "C6369A", "C6370A", "A6395T", "T6400C", "G6431C", "T6457A", "A6465G", "C6563T", "A6574T", "G6583A", "C6591G", "C6637T", "G6638A", "G6641A", "C6642A", "C6660T", "A6684G", "G6689A", "C6692T", "A6693C", "T6694C", "C6713A", "A6718G", "C6729T", "A6730G", "T6745C", "A6753G", "A6754C", "A6776G", "A6780C", "A6788G", "C6797A", "A6820T", "A6823T", "T6829-", "-6832A", "G6835C", "C6838A", "A6839T", "A6840C", "C6859A", "T6860C", "A6865G", "G6894C", "G6936A", "C6937A", "-6956G", "-6957G", "-6958A", "T6961A", "C6964T", "-6966A", "-6967T", "G6969A", "-6970C", "A6972C", "T6973C", "-6975G", "-6976G", "A6979G", "A6980G", "-6981G", "-6982G", "-6983G", "-6984A", "-6994A", "-6998T", "C7019G", "A7021T", "C7024T", "A7025C", "G7026A", "A7046G", "C7078T", "A7093G", "A7100C", "A7106G", "A7123C", "C7124T", "C7156T", "A7238G", "T7309A", "A7313C", "A7315G", "C7324T", "C7393T", "A7396G", "A7505C", "A7531G", "T7555C", "G7629C", "C7655A", "C7658G", "A7672G", "C7678T", "A7679G", "G7688C", "C7690A", "T7699C", "A7706C", "A7750G", "A7773G", "A7819G", "A7880G", "A7882T", "G7918A", "T7921C", "G7944A", "T7950C", "G7997A", "T8016C", "G8019A", "C8071T", "C8080A", "C8092A", "T8097C", "C8103T", "A8104C", "G8105A", "T8159G", "C8171A", "T8172C", "G8231A", "G8240A", "G8241A", "T8256C", "A8264G", "G8268T", "A8273G", "G8274T", "T8279G", "A8297G", "C8311T", "C8320G", "T8321C", "T8323A", "G8330T", "G8335A", "C8415T", "T8451C", "T8456G", "C8471A", "A8474C", "C8477T", "A8522G", "A8531C", "A8533G", "A8540G", "G8558T", "G8589A", "A8591C", "T8645C", "T8675C", "T8740C", "C8741T", "A8746T", "A8823G", "A8829T", "A8834G", "T8847A", "A8879G", "G8888A", "A8893G", "T8923G", "C8928T", "C8934A", "C9129A", "G9134A", "A9144G", "T9180C", "C9181T"], "INT": ["T21A", "K111R", "V113I", "N134D", "K173R", "T218I"], "RT-p51": ["K11T", "K49R", "I50V", "T135I", "V142I", "F214L", "Q245K", "E248D", "K277R", "L283I", "D291E", "L295M", "Q334L", "T362S", "K366R", "A369V", "M377T", "K390R"], "RT-p66": ["K11T", "K49R", "I50V", "T135I", "V142I", "F214L", "Q245K", "E248D", "K277R", "L283I", "D291E", "L295M", "Q334L", "T362S", "K366R", "A369V", "M377T", "K390R", "H480Y", "H483D", "K530R"], "gp120": ["A2V", "E4D", "H57Q", "E64N", "N66D", "N71K", "K89Q", "N102E", "T104S", "-105N", "-106H", "-107V", "N108T", "-109N", "-111N", "-112T", "-113N", "S115T", "-117G", "-120N", "K140R", "K141R", "I156L", "N157D", "N158E", "N159S", "N160D", "N161A", "S162N", "A172E", "T181S", "A193P", "A203T", "K204R", "E240D", "G241E", "Q243K", "S246C", "E262K", "A263N", "K265T", "T269I", "N272S", "K277R", "V279I", "H280S", "T292M", "Q300S", "T308A", "E309A", "N312E", "Q315K", "E323D", "F325L", "-328K", "K329S", "N335K", "S336P", "S347T", "G361K", "-368G", "-370Y", "-372R", "-373K", "-374G", "-375E", "-376N", "-377S", "N378-", "-382S", "P389D", "R391Q", "M398V", "R416Q", "T436D", "K462E"], "gp41": ["I4L", "S109T", "L118I", "Q119E", "N126D", "D129Q", "I135L", "N157S", "I193V", "R214E", "L216P", "D232N", "V238A", "S239N", "F263L", "L265S", "A267V", "A268T", "W286G", "L290T", "A310T", "G313N", "V318A", "I321V", "G322V", "R324V", "C326G", "I332V", "A343S"], "nef": ["P25S", "D38E", "E63D", "E64G", "G83S", "I133T", "Y135F", "N161D", "S163C", "C169S", "M182I", "K184R", "H196Y", "L198M"], "p1": ["K4R"], "p17": ["K12R", "T15A", "T53S", "M61I", "E74G", "L75F", "F79Y", "R91K", "D93E", "K127Q"], "p2": ["V7A", "T8-", "-10H", "-11T", "-12N"], "p24": ["V26A", "K30R", "S44A", "I91A", "M96L", "D128E", "I153V", "T178S", "E180D", "T207A", "T210S"], "p6": ["I14L", "I21T", "P24S", "-26L", "D32N", "R33G", "N47S"], "p7": ["N27S"], "pro": ["K57R", "I62V", "I64L"], "rev": ["S8P", "T14Q", "K32R", "R50K", "L78I", "H82N", "S86H", "V104G", "S107P", "T108D"], "tat": ["V4I", "T19A", "K24T", "K29R", "Q35P", "Q54S", "T58P", "Q60S", "K71E", "G79R", "S81P"], "vif": ["T20A", "Y30H", "G37R", "H73Q", "D78E", "H110Y", "Q127H", "E134D", "A137S", "T155E", "T157K", "R167S", "Q178R"], "vpr": ["H28N", "I61V", "S94N"], "vpu": ["S2N", "P3S", "C7W", "A8S", "L16G", "G27A", "K31R", "A50T", "E60D", "L61M", "E66K", "M67L", "G68-", "-70E", "-71M", "-72G", "-73N", "-74N", "-75D", "-76H", "-77G", "-79V"]}, "labels": {"aa": "INT: T21A, K111R, V113I, N134D, K173R, T218I; RT-p51: K11T, K49R, I50V, T135I, V142I, F214L, Q245K, E248D, K277R, L283I, D291E, L295M, Q334L, T362S, K366R, A369V, M377T, K390R; RT-p66: K11T, K49R, I50V, T135I, V142I, F214L, Q245K, E248D, K277R, L283I, D291E, L295M, Q334L, T362S, K366R, A369V, M377T, K390R, H480Y, H483D, K530R; gp120: A2V, E4D, H57Q, E64N, N66D, N71K, K89Q, N102E, T104S, -105N, -106H, -107V, N108T, -109N, -111N, -112T, -113N, S115T, -117G, -120N, K140R, K141R, I156L, N157D, N158E, N159S, N160D, N161A, S162N, A172E, T181S, A193P, A203T, K204R, E240D, G241E, Q243K, S246C, E262K, A263N, K265T, T269I, N272S, K277R, V279I, H280S, T292M, Q300S, T308A, E309A, N312E, Q315K, E323D, F325L, -328K, K329S, N335K, S336P, S347T, G361K, -368G, -370Y, -372R, -373K, -374G, -375E, -376N, -377S, N378-, -382S, P389D, R391Q, M398V, R416Q, T436D, K462E; gp41: I4L, S109T, L118I, Q119E, N126D, D129Q, I135L, N157S, I193V, R214E, L216P, D232N, V238A, S239N, F263L, L265S, A267V, A268T, W286G, L290T, A310T, G313N, V318A, I321V, G322V, R324V, C326G, I332V, A343S; nef: P25S, D38E, E63D, E64G, G83S, I133T, Y135F, N161D, S163C, C169S, M182I, K184R, H196Y, L198M; p1: K4R; p17: K12R, T15A, T53S, M61I, E74G, L75F, F79Y, R91K, D93E, K127Q; p2: V7A, T8-, -10H, -11T, -12N; p24: V26A, K30R, S44A, I91A, M96L, D128E, I153V, T178S, E180D, T207A, T210S; p6: I14L, I21T, P24S, -26L, D32N, R33G, N47S; p7: N27S; pro: K57R, I62V, I64L; rev: S8P, T14Q, K32R, R50K, L78I, H82N, S86H, V104G, S107P, T108D; tat: V4I, T19A, K24T, K29R, Q35P, Q54S, T58P, Q60S, K71E, G79R, S81P; vif: T20A, Y30H, G37R, H73Q, D78E, H110Y, Q127H, E134D, A137S, T155E, T157K, R167S, Q178R; vpr: H28N, I61V, S94N; vpu: S2N, P3S, C7W, A8S, L16G, G27A, K31R, A50T, E60D, L61M, E66K, M67L, G68-, -70E, -71M, -72G, -73N, -74N, -75D, -76H, -77G, -79V"}}}, {"name": "MZ642267", "node_attrs": {"div": 0.16193, "accession": "MZ642267", "clade_membership": {"value": "A1"}, "country": {"value": "RW"}, "date": {"value": 2016.0}, "Strain_name": {"value": "MAS_1F_Con"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A404G", "A410G", "G412A", "A417C", "C426A", "A428G", "C435T", "G455A", "A480G", "G481A", "T486C", "T525C", "C537A", "A548G", "A605G", "A607G", "A678G", "G686A", "A706G", "C710T", "G716A", "C731T", "A735G", "G738A", "C767T", "G771A", "C772A", "C823G", "G829A", "A891T", "C902T", "T992G", "A1034G", "G1089A", "G1109A", "A1193G", "A1215C", "A1230C", "A1241G", "C1247T", "G1271A", "A1412G", "G1424A", "A1467G", "G1469A", "G1486A", "A1496C", "A1644C", "T1646C", "G1697A", "C1706T", "C1744T", "-1785C", "-1786A", "C1787A", "A1804G", "G1835A", "A1932G", "C1960T", "C1985T", "T1986C", "A1990G", "A2007G", "G2008A", "C2044T", "G2068A", "T2095C", "A2134G", "A2152T", "A2161G", "A2210G", "C2263T", "G2273A", "A2286G", "G2311A", "T2315C", "T2347C", "G2350A", "C2356T", "G2380A", "T2392C", "A2404C", "G2431A", "C2464T", "G2473A", "A2560G", "T2612G", "C2615A", "G2686A", "G2704A", "G2710A", "G2734A", "A2752G", "G2761A", "T2779C", "A2829T", "G2830A", "G2876A", "G2926A", "C2941G", "C2953A", "A2975G", "G3010A", "G3037A", "A3088G", "G3127A", "C3159G", "G3168A", "G3200A", "A3204C", "G3208A", "G3209A", "G3211A", "G3217A", "T3253C", "C3266T", "T3331C", "A3334C", "T3358C", "T3368C", "T3399C", "G3427A", "G3439A", "G3442A", "A3489G", "T3496C", "T3530C", "A3607G", "G3616T", "A3622G", "C3628T", "A3629C", "T3644G", "G3675A", "C3682T", "A3724G", "A3760G", "G3772A", "A3775C", "G3787A", "A3866G", "A3874C", "A3876G", "C3940T", "A3955C", "T3962C", "A4069C", "C4072T", "C4076A", "A4114C", "C4138T", "C4144T", "C4149T", "G4276T", "C4288T", "A4303C", "G4354A", "A4423C", "T4435C", "C4436A", "A4522G", "A4555G", "G4573A", "C4576T", "T4579C", "T4585C", "A4608C", "G4623A", "G4637A", "G4642A", "A4650C", "T4672A", "G4677A", "T4691A", "G4696A", "T4701G", "G4708A", "A4717T", "C4724T", "C4728A", "G4737A", "A4740T", "C4761T", "T4769C", "T4776C", "G4786A", "A4799T", "A4811G", "A4814G", "A4817G", "A4819C", "C4820T", "T4840C", "A4861G", "A4863G", "G4864A", "A4865G", "C4871A", "C4898T", "C4911A", "T4912C", "G4913A", "G4923A", "A4924C", "C4925T", "C4937A", "C4976A", "G4982A", "G4995A", "A5045G", "G5075A", "A5112G", "T5197G", "C5213A", "C5214T", "C5221T", "G5257A", "T5260C", "T5293A", "A5355G", "G5359C", "T5371G", "T5382C", "A5385G", "A5395G", "T5439C", "G5448A", "C5454T", "A5548T", "A5556C", "G5558A", "A5563G", "C5579A", "T5600-", "A5601-", "T5602-", "C5612G", "T5613G", "T5636C", "C5653A", "A5659T", "G5668A", "G5700A", "A5702G", "A5703G", "A5720G", "C5731T", "A5743C", "A5745C", "A5746G", "T5781G", "C5787A", "A5788T", "A5795C", "C5797A", "G5800A", "-5809G", "-5810G", "-5811G", "G5830A", "C5833T", "G5839T", "A5845G", "A5846C", "A5848G", "T5851G", "G5917T", "G5954A", "A5955C", "T5964C", "A6020C", "A6024C", "G6028A", "A6030C", "G6055A", "A6066G", "G6071A", "A6088G", "C6101T", "C6110G", "G6121A", "G6133A", "G6165C", "T6166C", "-6167G", "-6168A", "-6169C", "-6170A", "-6171A", "-6172C", "-6174T", "-6177C", "-6178T", "C6184A", "C6189A", "C6190T", "A6192C", "T6193A", "A6194G", "-6195T", "-6198A", "-6199T", "-6201A", "C6202T", "-6203G", "-6207C", "-6208A", "-6210T", "-6211C", "-6216T", "-6217G", "-6219C", "G6220A", "A6222C", "G6224T", "G6225C", "G6227C", "A6228C", "A6229G", "A6232G", "A6251G", "A6261C", "T6263G", "A6276T", "T6285A", "G6311A", "A6319G", "T6331G", "T6337A", "G6339A", "T6373G", "G6379A", "T6382C", "A6388T", "G6392A", "T6460G", "A6461G", "G6466C", "C6469T", "A6471C", "C6477A", "A6484T", "A6489G", "C6511T", "G6525A", "A6532C", "C6545T", "A6571G", "G6572A", "A6576G", "A6580G", "A6581C", "A6584G", "A6623C", "G6638C", "A6647C", "T6652C", "C6661T", "A6668G", "A6671G", "C6678G", "A6723T", "T6760C", "A6765C", "T6766G", "G6771A", "G6779A", "A6780G", "A6781C", "A6785G", "T6787A", "A6790C", "A6791G", "C6808T", "A6811G", "C6812A", "A6848G", "T6856G", "A6868G", "T6875G", "A6913G", "T6932A", "G6936T", "T6946A", "A6947G", "C6952A", "-6956C", "-6957A", "-6958T", "-6966C", "-6967A", "-6970G", "-6975A", "-6976T", "A6978C", "A6979C", "-6981C", "-6982C", "-6983A", "-6984C", "A6986C", "C6988G", "G6990A", "C6993-", "G6995-", "-6998A", "A7027G", "A7089C", "G7102A", "T7107C", "A7123G", "A7133T", "C7134T", "C7153T", "A7158G", "G7160A", "A7161C", "C7162G", "C7174T", "G7198A", "T7217C", "G7225A", "G7276A", "A7312C", "A7328C", "G7366A", "G7390A", "A7427G", "G7477A", "A7525G", "A7590C", "C7603T", "T7615C", "C7625T", "G7627T", "C7655T", "A7685T", "G7745A", "T7751C", "C7775T", "C7792G", "A7818G", "A7822C", "T7912A", "T7926C", "A7942G", "G7943A", "T7948A", "A7964G", "G8005A", "A8128G", "C8129A", "A8130G", "C8131G", "A8132-", "G8133-", "G8134-", "G8135-", "G8136-", "G8137-", "T8138-", "G8139-", "G8140-", "G8141-", "A8142-", "A8143-", "T8155C", "T8164C", "C8168A", "G8170A", "G8181T", "A8191C", "T8203A", "T8205C", "T8206C", "T8215A", "C8221A", "A8228C", "T8256G", "T8257C", "A8275G", "A8276C", "T8281G", "A8288G", "T8290G", "C8320T", "T8366C", "T8371A", "G8373A", "G8375A", "G8377A", "C8382A", "G8388A", "A8399G", "A8402G", "A8407G", "A8408C", "A8424G", "A8425C", "G8427A", "A8441C", "G8476A", "T8483C", "A8519G", "G8528A", "A8531G", "T8546C", "A8576C", "T8582C", "C8593G", "T8595G", "G8597A", "A8643G", "G8653A", "C8688A", "T8720C", "G8774A", "C8775T", "T8789G", "A8798C", "T8813C", "A8834C", "A8837G", "A8846T", "A8852G", "G8870A", "A8882C", "A8886G", "T8897C", "G8905T", "A8912C", "A8918G", "A8929G", "C8930A", "C8934T", "G8936A", "T8947A", "A8980G", "T8993A", "T9014G", "C9039T"], "INT": ["I31V", "K34R", "L101I", "A125V", "E167D", "Q216H", "Q221K", "D278A", "G283D", "D288N"], "RT-p51": ["T39A", "V60I", "K64R", "K103N", "S173A", "Q174K", "Q245I", "V261I", "T294A", "A355G", "R358K", "A369T", "E370A", "V372I", "E413D", "V435A"], "RT-p66": ["T39A", "V60I", "K64R", "K103N", "S173A", "Q174K", "Q245I", "V261I", "T294A", "A355G", "R358K", "A369T", "E370A", "V372I", "E413D", "V435A", "K465R", "Q507H", "K512Q", "L517V", "G527E"], "gp120": ["E21D", "D34T", "V37A", "I56L", "H57P", "E59A", "M67I", "N71S", "V73I", "Q86E", "-105D", "-106N", "-107I", "-109D", "-111I", "-120R", "M133V", "E136A", "L137V", "K141I", "V144E", "K150R", "V153I", "N158G", "S162E", "I173M", "V180I", "K201N", "D202E", "K204N", "N206T", "T208K", "K212R", "R224K", "E240K", "I244V", "I257L", "E262Q", "K265P", "N272G", "N273D", "T275R", "Y290F", "Q300K", "N304T", "S306N", "E309S", "N311E", "T313A", "Q320K", "-326K", "I332V", "L341V", "S360T", "G361I", "N364K", "S365G", "-368H", "-370N", "-372W", "-379N", "E381T", "-382T", "N383Q", "P389Q", "Q412P", "R416K", "V418T", "T427L", "N435S"], "gp41": ["I9L", "S42G", "N96T", "Q108Y", "T128S", "D148N", "D163E", "K172R", "I208T", "R221G", "L277G", "G278-", "W279-", "E280-", "G281-", "L289I", "G293V", "I301T", "I309L", "V318G", "I325L", "C326W", "I329V", "L340F"], "nef": ["I10K", "V11I", "G12E", "P14T", "V16I", "I20M", "Q22R", "K28A", "G29T", "S45N", "A84G", "L85V", "I101V", "R104K", "H116N", "D149E", "E152D", "M182V", "R188L", "R194I", "H196R", "F202Y"], "p1": ["I5L"], "p17": ["R26K", "K28Q", "L31M", "S49D", "L68I", "T115A", "N124S"], "p24": ["I2V", "V3M", "A14N", "A31G", "S33N", "M54L", "H87Q", "G120S"], "p6": ["T22V", "K42R"], "p7": ["M1V", "R7K", "K10N"], "pro": ["V13I", "K45R", "L63S", "I64M", "K70R"], "rev": ["A15T", "L22I", "K32E", "S34T", "K39R", "D53N", "T94E", "Q95G", "G96-", "V97-", "G98-", "R99-", "S103P", "S106P", "S107H", "K115Q"], "tat": ["N7D", "T58S", "Q60Y", "S61N", "K63E", "P68H", "S73P", "Q78R", "V80D"], "vif": ["M8L", "V13I", "R19K", "N22H", "M29K", "V31I", "G37N", "F39V", "R41K", "Y44F", "H48N", "V51I", "S52C", "R67K", "D78A", "V85A", "K92R", "R93E", "S95R", "L109T", "D113T", "D117E", "S130R", "A137T", "K176E"], "vpr": ["Q3R", "P37I", "I84V", "R85P", "V89G", "S93P", "S94G"], "vpu": ["S2R", "I10T", "L16I", "I18L", "V21I", "K32R", "K38R", "E44K", "I46L", "R47G", "D58E", "D62A", "E63A", "L64I", "A65M", "D78-", "N80-", "N81-", "L82-"]}, "labels": {"aa": "INT: I31V, K34R, L101I, A125V, E167D, Q216H, Q221K, D278A, G283D, D288N; RT-p51: T39A, V60I, K64R, K103N, S173A, Q174K, Q245I, V261I, T294A, A355G, R358K, A369T, E370A, V372I, E413D, V435A; RT-p66: T39A, V60I, K64R, K103N, S173A, Q174K, Q245I, V261I, T294A, A355G, R358K, A369T, E370A, V372I, E413D, V435A, K465R, Q507H, K512Q, L517V, G527E; gp120: E21D, D34T, V37A, I56L, H57P, E59A, M67I, N71S, V73I, Q86E, -105D, -106N, -107I, -109D, -111I, -120R, M133V, E136A, L137V, K141I, V144E, K150R, V153I, N158G, S162E, I173M, V180I, K201N, D202E, K204N, N206T, T208K, K212R, R224K, E240K, I244V, I257L, E262Q, K265P, N272G, N273D, T275R, Y290F, Q300K, N304T, S306N, E309S, N311E, T313A, Q320K, -326K, I332V, L341V, S360T, G361I, N364K, S365G, -368H, -370N, -372W, -379N, E381T, -382T, N383Q, P389Q, Q412P, R416K, V418T, T427L, N435S; gp41: I9L, S42G, N96T, Q108Y, T128S, D148N, D163E, K172R, I208T, R221G, L277G, G278-, W279-, E280-, G281-, L289I, G293V, I301T, I309L, V318G, I325L, C326W, I329V, L340F; nef: I10K, V11I, G12E, P14T, V16I, I20M, Q22R, K28A, G29T, S45N, A84G, L85V, I101V, R104K, H116N, D149E, E152D, M182V, R188L, R194I, H196R, F202Y; p1: I5L; p17: R26K, K28Q, L31M, S49D, L68I, T115A, N124S; p24: I2V, V3M, A14N, A31G, S33N, M54L, H87Q, G120S; p6: T22V, K42R; p7: M1V, R7K, K10N; pro: V13I, K45R, L63S, I64M, K70R; rev: A15T, L22I, K32E, S34T, K39R, D53N, T94E, Q95G, G96-, V97-, G98-, R99-, S103P, S106P, S107H, K115Q; tat: N7D, T58S, Q60Y, S61N, K63E, P68H, S73P, Q78R, V80D; vif: M8L, V13I, R19K, N22H, M29K, V31I, G37N, F39V, R41K, Y44F, H48N, V51I, S52C, R67K, D78A, V85A, K92R, R93E, S95R, L109T, D113T, D117E, S130R, A137T, K176E; vpr: Q3R, P37I, I84V, R85P, V89G, S93P, S94G; vpu: S2R, I10T, L16I, I18L, V21I, K32R, K38R, E44K, I46L, R47G, D58E, D62A, E63A, L64I, A65M, D78-, N80-, N81-, L82-"}}}]}]}]}, {"name": "A1_NODE_0000006", "node_attrs": {"div": 0.09791, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["-305T", "C606A", "A683G", "C722T", "T734C", "A866G", "C1094T", "A1192G", "G1278A", "G1279A", "A1313G", "T1724G", "C1752T", "C1787T", "A1968G", "A2026G", "C2071T", "G2113A", "C2211A", "C2434T", "A2462G", "C2499T", "A2630G", "G2710A", "G2909C", "A2975C", "G3217A", "T3225C", "G3226A", "A3293G", "C3307G", "G3667A", "G3675A", "C3682A", "G4112A", "G4195A", "A4859G", "C4976A", "C5134A", "T5179G", "G5444A", "C5496A", "G5538C", "T5613G", "G5644A", "C5789T", "A5795C", "-5809G", "-5810G", "-5811G", "G5836T", "G5856A", "T5881G", "T5924C", "-6169T", "-6170A", "-6172C", "-6173A", "-6175C", "A6186-", "G6268A", "A6276G", "A6631G", "T6925C", "-6962A", "-6966C", "G6990A", "-6994T", "G7101A", "A7168G", "A7315G", "G7477A", "A7590C", "A7701G", "G7944A", "A8228G", "C8242G", "A8276G", "C8323A", "G8375A", "A8424G", "A8469G", "T8485C", "A8494C", "C8496A", "C8498T", "C8499G", "C8585T", "G8597T", "A8652C", "G8653A", "A8666C", "C8688A", "A8794C", "A8805G", "A8880G", "C8881T", "A8882G"], "INT": ["V113I"], "RT-p51": ["T39K", "S123D", "T135I", "I179V", "A272P", "T294P", "M377T", "T400A", "D404E"], "RT-p66": ["T39K", "S123D", "T135I", "I179V", "A272P", "T294P", "M377T", "T400A", "D404E", "G527E", "D529E"], "gp120": ["S1N", "-124G", "K141R", "K150R", "N327-", "T380A", "R416K", "T436A"], "gp41": ["I4M", "R214E", "I309V", "I325A"], "nef": ["Q22R", "I43V", "I48T", "N49A", "H50A", "P51T", "S52N", "R104Q", "E108D", "H116N", "E151A", "K155E", "R178K", "T180V"], "p24": ["P111L", "K154R", "G183N"], "p6": ["F15L", "P24S"], "pro": ["K57R"], "rev": ["K32R"], "tat": ["N40K", "G79R"], "vif": ["S130R", "P183H"], "vpu": ["V13I", "-79D"]}, "labels": {"aa": "INT: V113I; RT-p51: T39K, S123D, T135I, I179V, A272P, T294P, M377T, T400A, D404E; RT-p66: T39K, S123D, T135I, I179V, A272P, T294P, M377T, T400A, D404E, G527E, D529E; gp120: S1N, -124G, K141R, K150R, N327-, T380A, R416K, T436A; gp41: I4M, R214E, I309V, I325A; nef: Q22R, I43V, I48T, N49A, H50A, P51T, S52N, R104Q, E108D, H116N, E151A, K155E, R178K, T180V; p24: P111L, K154R, G183N; p6: F15L, P24S; pro: K57R; rev: K32R; tat: N40K, G79R; vif: S130R, P183H; vpu: V13I, -79D"}}, "children": [{"name": "A1_NODE_0000007", "node_attrs": {"div": 0.10517, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G519A", "A685G", "G771C", "C823G", "A1772G", "C1826G", "G2008A", "G2111A", "A3165G", "G3200A", "G3859A", "C4436T", "A4692G", "A4693G", "T4697A", "T4858A", "A4878G", "A5159C", "A5291T", "A5305G", "T5371G", "T5382C", "A5461G", "A5462T", "A5471G", "T5472G", "T5628G", "G5635A", "A5718G", "C5884T", "-6171A", "-6174T", "-6177C", "-6179A", "A6191G", "-6195T", "-6198G", "-6201A", "-6203A", "-6207C", "-6208A", "-6211T", "-6215A", "G6225A", "A6273G", "G6323A", "A6329G", "A6338C", "G6339A", "C6496T", "G6572A", "A6636T", "G6638A", "-6689G", "A6765C", "G6771A", "C6797A", "C6826A", "T6828C", "T6860C", "A6996C", "G6997A", "G7102T", "A7155G", "C7354T", "G7417A", "T7642G", "A7880G", "C8047T", "G8152A", "T8196C", "G8393A", "C8406A", "C8460T"], "RT-p51": ["E6K", "K357R", "A369T"], "RT-p66": ["E6K", "K357R", "A369T"], "gp120": ["-105D", "-106I", "K140R", "E240K", "N261V", "E262K", "N304T", "S306N"], "gp41": ["D113E", "I193V", "I298T", "C326G"], "nef": ["H40Y"], "p17": ["Q117R"], "p24": ["S14P", "A31G"], "pro": ["L10V"], "rev": ["P67S", "V102I"], "tat": ["K29V", "Y32W"], "vif": ["K36G", "L91Q", "I98V"], "vpr": ["M19L", "I63F", "V89G", "S93P"], "vpu": ["C7W"]}, "labels": {"aa": "RT-p51: E6K, K357R, A369T; RT-p66: E6K, K357R, A369T; gp120: -105D, -106I, K140R, E240K, N261V, E262K, N304T, S306N; gp41: D113E, I193V, I298T, C326G; nef: H40Y; p17: Q117R; p24: S14P, A31G; pro: L10V; rev: P67S, V102I; tat: K29V, Y32W; vif: K36G, L91Q, I98V; vpr: M19L, I63F, V89G, S93P; vpu: C7W"}}, "children": [{"name": "MH705133", "node_attrs": {"div": 0.14176, "accession": "MH705133", "clade_membership": {"value": "A1"}, "country": {"value": "CD"}, "date": {"value": 1987.0}, "Strain_name": {"value": "PBS888"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A21G", "G53-", "C93T", "T94C", "G112A", "T163A", "C201T", "G206A", "T213C", "T214G", "-215A", "-216A", "-217A", "A302G", "-304A", "C362T", "A417C", "C426A", "A431G", "A461G", "A480G", "A520T", "A521G", "C531T", "C535G", "A540C", "C558T", "T559A", "A578C", "T596C", "T614G", "A715C", "G740A", "G747A", "A758G", "A762G", "T774A", "A776G", "G803A", "A810G", "A914G", "G956A", "T978A", "T983C", "C1063T", "T1064G", "G1089A", "C1136T", "G1184A", "T1229C", "G1268A", "T1280C", "T1296C", "T1322C", "A1350T", "T1422C", "A1448G", "C1449A", "G1472A", "T1484C", "C1517T", "G1619A", "A1694G", "A1719C", "A1743C", "T1749C", "-1785C", "-1786C", "A1839G", "G1845A", "A1900G", "G1998A", "A2002G", "A2020G", "G2026A", "A2203G", "T2209C", "A2230G", "G2311A", "G2332A", "G2428A", "T2499C", "G2530A", "C2533T", "A2579T", "C2596T", "C2613T", "T2632C", "T2654C", "T2689C", "C2720T", "G2734A", "T2735C", "G2830A", "C2845A", "A2925G", "C2930T", "G2947A", "T2983C", "G3010A", "C3023T", "A3136G", "A3142G", "A3151G", "C3178T", "A3251G", "G3293A", "G3316A", "T3331A", "T3535G", "A3622G", "A3661C", "A3670G", "A3709G", "G3718A", "T3755G", "A3761G", "G3796A", "G3816A", "C3857A", "A3866G", "A3880G", "G3916A", "C4015T", "G4063A", "T4075C", "C4181A", "A4183G", "G4186A", "A4195G", "G4276C", "A4303G", "C4318T", "A4319G", "T4321A", "T4412C", "A4437C", "G4549A", "A4567G", "G4642A", "C4645T", "T4691C", "T4701G", "G4708A", "C4728A", "A4735G", "A4739G", "C4757T", "G4774A", "A4784C", "C4826A", "G4829A", "A4895G", "A4901C", "C4965G", "A4966G", "A5049G", "A5055G", "A5061C", "A5065G", "G5066A", "A5094G", "A5122G", "G5123A", "G5128A", "T5188A", "A5200G", "C5221G", "A5227G", "A5230G", "A5240G", "T5263C", "A5285G", "T5314A", "G5376A", "T5436G", "G5448A", "C5454T", "G5534A", "A5535G", "G5561A", "T5602G", "T5611G", "C5612T", "C5614T", "G5620C", "A5623C", "A5655G", "C5659T", "T5704A", "G5706A", "C5713G", "G5737A", "G5784C", "T5789C", "A5796C", "-5812G", "G5830A", "T5851C", "A5856G", "G5909A", "A5914G", "A5926C", "T5929C", "T5941A", "T5956G", "C5958A", "A5995G", "A6015G", "A6031C", "A6061G", "A6073C", "-6167C", "-6178C", "-6180G", "C6181A", "-6186T", "C6187T", "-6196C", "A6197G", "-6199C", "-6204G", "-6205C", "-6209A", "-6210T", "-6213A", "-6214T", "-6216T", "-6217G", "A6222G", "A6251G", "A6261C", "C6263A", "G6267A", "A6278G", "T6322A", "A6330G", "G6336A", "T6337A", "T6340G", "G6379A", "G6464C", "C6483T", "G6490A", "C6523T", "T6551C", "A6595G", "A6599T", "A6602T", "C6661A", "A6684G", "A6685G", "G6693A", "T6745C", "A6754G", "C6758T", "T6766A", "A6780C", "A6788G", "A6796G", "A6800G", "A6810T", "A6811G", "A6818G", "A6820T", "G6821-", "-6835C", "C6859T", "C6861A", "A6865C", "A6931G", "-6956A", "-6957A", "-6958G", "A6962G", "-6963G", "-6967T", "A6971-", "-6980G", "-6981A", "-6982G", "-6983G", "-6984G", "A6989G", "-6998T", "-6999T", "A7002G", "A7040G", "A7044G", "T7045G", "G7058A", "T7059C", "A7089C", "A7108C", "A7111T", "A7123G", "C7124A", "A7138G", "A7152G", "C7156T", "A7161C", "A7162C", "G7168A", "G7190A", "G7197A", "T7217C", "C7250A", "G7278A", "A7313C", "C7463A", "A7470G", "C7561T", "A7589G", "G7688A", "C7703T", "A7714C", "G7753A", "T7757C", "C7770G", "A7818G", "T7877G", "C7935A", "A7938G", "A7989G", "A7998G", "C8038T", "C8051A", "C8080A", "T8097C", "G8134T", "G8158A", "T8223C", "A8273G", "A8323G", "A8399G", "G8404A", "-8487G", "-8488C", "-8489A", "-8490G", "-8491A", "-8492G", "A8502G", "G8503C", "T8504G", "A8584T", "T8595C", "C8651A", "C8676T", "C8687T", "C8751T", "A8777G", "G8807A", "G8868A", "G8875A", "G8909A", "T8913C", "A8915G", "T8923G", "C8934G", "T8935A", "A9106G", "-9108C", "G9138-", "C9178T"], "INT": ["R14K", "L28I", "I31V", "Q136K", "E167D", "I182V", "Q221S"], "RT-p51": ["D123G", "I135T", "S162C", "S173L", "F214L", "D250E", "K277R", "T386A", "A400T"], "RT-p66": ["D123G", "I135T", "S162C", "S173L", "F214L", "D250E", "K277R", "T386A", "A400T", "H480Q", "S554A", "I556V"], "gp120": ["N1S", "D19N", "D29E", "D34E", "T35K", "Q54R", "E59D", "-107G", "-109S", "-120I", "-121N", "-122M", "-123R", "G124E", "M133V", "E136A", "L137I", "R138K", "K142E", "I156M", "N158E", "S161G", "E204Q", "P210L", "I249F", "T250S", "K277R", "H302Y", "E309A", "N312E", "Q315K", "K316E", "K319M", "R322G", "E323-", "-328N", "N334T", "S336H", "-368K", "-370G", "-372K", "-375E", "-376G", "-377N", "N378D", "-379T", "-381K", "-382L", "N383S", "I396V", "N397R", "V402T", "Q412P", "K416N", "L424I", "N433S", "N434S", "D446N", "R448K", "L466I", "R475K"], "gp41": ["M4L", "L54M", "K56R", "N96A", "D129N", "E137D", "A156G", "K172R", "S192A", "P211Q", "N212S", "Q229R", "D232G", "L265S", "I307T", "R324G", "A325V"], "nef": ["R21K", "A50E", "-53A", "-54A", "Y81F", "E176K", "L198E"], "p17": ["K28Q", "L31M", "S49G", "E62M", "P66S", "A67G", "K69Q", "L75Y", "D93E", "K127T"], "p2": ["T8Q", "-10T", "-11N"], "p24": ["A6T", "I11V", "L15M", "I27V", "L83I", "G120S", "T207S"], "p6": ["I14L", "T22P", "S23P"], "pro": ["K14R", "G16E", "C67Y"], "rev": ["D7S", "S8T", "T14R", "V16I", "L78I", "G96*", "V104M"], "tat": ["R53K", "Q54H", "S62N", "Q76K", "T77A"], "vif": ["R19K", "T20I", "F39V", "R41K", "H48N", "K50R", "R63K", "H80Q", "Q105H", "Q127G", "T155A", "T157A", "T159P", "K160R", "T170A", "K179R", "R181K"], "vpr": ["D7N", "H28Q", "I46V", "I61V", "D91N"], "vpu": ["T2V", "P3S", "E5Q", "I6L", "L33I", "Q36E", "E44K", "-69D", "-70Y", "-71N", "-72L", "-77W"]}, "labels": {"aa": "INT: R14K, L28I, I31V, Q136K, E167D, I182V, Q221S; RT-p51: D123G, I135T, S162C, S173L, F214L, D250E, K277R, T386A, A400T; RT-p66: D123G, I135T, S162C, S173L, F214L, D250E, K277R, T386A, A400T, H480Q, S554A, I556V; gp120: N1S, D19N, D29E, D34E, T35K, Q54R, E59D, -107G, -109S, -120I, -121N, -122M, -123R, G124E, M133V, E136A, L137I, R138K, K142E, I156M, N158E, S161G, E204Q, P210L, I249F, T250S, K277R, H302Y, E309A, N312E, Q315K, K316E, K319M, R322G, E323-, -328N, N334T, S336H, -368K, -370G, -372K, -375E, -376G, -377N, N378D, -379T, -381K, -382L, N383S, I396V, N397R, V402T, Q412P, K416N, L424I, N433S, N434S, D446N, R448K, L466I, R475K; gp41: M4L, L54M, K56R, N96A, D129N, E137D, A156G, K172R, S192A, P211Q, N212S, Q229R, D232G, L265S, I307T, R324G, A325V; nef: R21K, A50E, -53A, -54A, Y81F, E176K, L198E; p17: K28Q, L31M, S49G, E62M, P66S, A67G, K69Q, L75Y, D93E, K127T; p2: T8Q, -10T, -11N; p24: A6T, I11V, L15M, I27V, L83I, G120S, T207S; p6: I14L, T22P, S23P; pro: K14R, G16E, C67Y; rev: D7S, S8T, T14R, V16I, L78I, G96*, V104M; tat: R53K, Q54H, S62N, Q76K, T77A; vif: R19K, T20I, F39V, R41K, H48N, K50R, R63K, H80Q, Q105H, Q127G, T155A, T157A, T159P, K160R, T170A, K179R, R181K; vpr: D7N, H28Q, I46V, I61V, D91N; vpu: T2V, P3S, E5Q, I6L, L33I, Q36E, E44K, -69D, -70Y, -71N, -72L, -77W"}}}, {"name": "FJ388943", "node_attrs": {"div": 0.15693000000000001, "accession": "FJ388943", "clade_membership": {"value": "A1"}, "country": {"value": "CY"}, "date": {"value": 2006.0}, "Strain_name": {"value": "CY154"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "C379A", "C435T", "A509G", "A520C", "T525A", "C539T", "A540G", "A554G", "A562G", "T575C", "G608A", "C636T", "T641A", "C657A", "C668T", "A669-", "A670-", "G671-", "C672-", "A673-", "A674-", "A675-", "A676-", "G677-", "A678-", "C679-", "A680-", "G716A", "C734A", "A735G", "G785A", "G791A", "G829A", "C851T", "G866A", "A878T", "C917T", "T926G", "C947T", "C1062A", "G1078C", "A1079G", "G1109A", "C1137T", "C1211A", "G1232A", "T1244A", "T1329G", "G1355A", "T1362C", "A1367G", "C1385T", "T1409C", "A1412G", "G1430A", "C1446G", "A1447T", "T1451A", "A1452C", "C1453A", "A1454T", "-1455A", "-1456C", "-1457A", "G1486A", "C1490A", "A1532G", "A1538G", "G1586A", "G1661A", "A1673G", "T1679C", "G1697A", "A1701T", "C1706T", "A1709C", "C1714T", "A1768T", "A1781T", "A1783C", "G1784-", "T1790C", "C1831T", "A1841G", "T1868C", "G1883A", "C1903A", "T1954C", "G1963A", "C1985A", "G2074A", "T2080A", "T2101A", "A2127C", "G2180A", "T2257C", "C2263T", "G2328A", "A2362G", "A2374G", "G2380T", "G2389A", "A2422G", "G2463A", "A2519G", "C2521T", "T2542A", "A2579G", "G2580C", "A2611G", "T2671C", "G2686A", "A2693G", "C2715A", "C2728A", "G2755A", "A2788G", "A2842G", "T2917A", "A2938G", "C2944T", "C2953T", "T2968G", "A2974G", "T2996C", "A3001G", "T3002C", "G3004A", "G3008A", "G3016A", "G3029A", "G3053A", "A3071G", "C3100T", "A3103G", "T3121C", "G3211A", "G3221A", "T3222C", "C3232T", "G3236A", "A3259G", "G3340A", "C3359T", "G3398A", "T3412A", "G3431T", "T3445C", "G3463A", "C3475T", "A3478G", "C3499A", "C3504A", "C3541T", "C3542T", "T3544C", "G3553A", "G3556A", "T3559C", "T3566C", "C3610T", "A3665G", "C3668T", "G3674A", "G3686A", "A3703G", "T3730C", "T3742C", "A3775G", "A3836G", "G3846A", "T3850C", "T3895C", "T3962G", "C3970T", "A4000G", "G4060A", "A4093G", "A4096G", "C4138T", "A4156G", "G4228A", "G4243A", "A4246G", "C4288T", "C4357T", 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RT-p66: K11T, E29K, R78K, I142V, S162A, T200A, A207D, S211R, D291E, E305K, D312N, D320N, I326V, V376T, V381I, V435I, A446S, T470N, H483Y, S491P, K524E, E527K, V531I; gp120: A3T, N5K, E59G, E64D, N71P, H77Q, D85E, K93Q, N102D, -107S, -109I, K127T, F131Y, M133I, K142Q, K143N, V144K, R150K, N159D, N160S, S161R, S162H, F195Y, V242I, S246T, D251N, T255I, K265Q, N267K, N272G, K277Q, H280R, A288S, Q300K, R307A, Q315N, K316N, A318T, R322Q, H324-, I332A, N334D, S336P, T366-, W367-; gp41: V2I, V7A, L9F, A14T, I24M, V28A, S42N, N109S, D129Y, I130L, S133T, N140H, D148E, H209L, E214R, G215E, G230D, D247E, S251N, L277N, L290S, N302S, G313E, I321L, I329L; nef: I10V, E15A, R22K, E28A, K39T; p17: A15K, E62T, L64I, K69E, K76R, D102E, Q108K, K112-, Q113-, K114-, T115-; p2: T8V, N9Q, -10H, -11T, -12N; p24: I2V, S33N, L111T, G116A, S200A; p6: T8S, A12V, Q30L, E34D, Q35P, P36-, S51L; p7: R7K; pro: I15V, D29N, D35E, L63I; rev: S8N, E11A, R32Q, S34T, D53N, R66G, E68A, R99G, P100T, Q101E, S107P; tat: T19K, N23S, K24N, P59S, Q60H, D64N, I74L, Q78P, R79G, V80N; vif: V31T, G37K, A62D, R67K, I87V, Q91H, R93K, L109I, R130S, A137P, K151R, T157K, R158K; vpr: I61T, R62K, V70T; vpu: P3L, K31R, L33V, R37K, T63A, M67V, -69N, -74H, -75A, -76L, -77L, D78G"}}}]}, {"name": "A1_NODE_0000008", "node_attrs": {"div": 0.10181, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C23-", "-24T", "G256A", "C767T", "C1598T", "T1720G", "-1786C", "C3751T", "G4267A", "C5412T", "T5478C", "-5812G", "T5878C", "C6109T", "T6341A", "G6345A", "A6346-", "T6395A", "G6716A", "G6743A", "A6809G", "-6968T", "A6985-", "A7158G", "A7628G", "T7666A", "A7706C", "A8191G", "A8402G", "C8741T", "G8870T", "C8903T", "-9109T"], "gp120": ["S181T", "A288T", "D297N"], "gp41": ["N109E", "D121E", "I135L"], "nef": ["I20M", "L85V", "Y102W"], "p6": ["I14S"], "rev": ["K115E"]}, "labels": {"aa": "gp120: S181T, A288T, D297N; gp41: N109E, D121E, I135L; nef: I20M, L85V, Y102W; p6: I14S; rev: K115E"}}, "children": [{"name": "MH705151", "node_attrs": {"div": 0.14501999999999998, "accession": "MH705151", "clade_membership": {"value": "A1"}, "country": {"value": "CD"}, "date": {"value": 1987.0}, "Strain_name": {"value": "70641"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T12G", "T94C", "C96A", "G112A", "T227A", "T258G", "A286G", "-304T", "A417C", "A419T", "G424A", "C471G", "A480G", "A491C", "A492T", "A503C", "A549T", "A562C", "A619G", "C636T", "G650A", "A654-", "T655-", "A656-", "C657-", "A658-", "A659-", "A661T", "T662A", "C688T", "G712A", "G738A", "G740A", "G747A", "A762G", "C765T", "G771A", "C772G", "G803A", "T808C", "T852A", "A873G", "C950T", "G956A", "C974T", "T978G", "C1006A", "C1063T", "G1089A", "C1115A", "G1268A", "A1278G", "A1279G", "T1322C", "T1329A", "A1350G", "C1385T", "T1502G", "-1503A", "-1504T", "-1505T", "G1508A", "C1610A", "T1616A", "G1619A", "T1646C", "A1673G", "C1693T", "A1694G", "G1718A", "G1731A", "C1756T", "G1784A", "-1785C", "C1913T", "A1932G", "G1963A", 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"V292I", "P294T", "D312E", "I326V", "I341V", "K366R", "V376S", "K390R", "K395R", "V435L", "H483Y", "R512K", "I521M"], "gp120": ["N1K", "A3T", "E4G", "N52S", "N57D", "E64K", "T78M", "N102D", "T104S", "-105H", "-106S", "-107I", "-109S", "-111T", "-112I", "-113N", "-114S", "-115N", "-116S", "-117T", "-118S", "-119D", "-120I", "-121S", "R141T", "N157D", "N158E", "S161G", "N201K", "D202E", "K203E", "E204N", "P210I", "K212R", "E240G", "K241E", "M243V", "I249F", "D251N", "T255I", "L260F", "P263S", "K265Q", "K277R", "V279F", "H280R", "D294E", "R307K", "E309D", "N311E", "N312S", "K319A", "R322G", "E323K", "H324E", "-326K", "-327T", "-328N", "K329T", "I332-", "N334A", "L341I", "G351R", "G361D", "-368R", "-370G", "-372W", "-373S", "-374N", "-375I", "-379N", "-381T", "-382S", "P389Q", "R391K", "I396V", "K416Q", "N432S", "N433S", "N435R", "K474R"], "gp41": ["V2I", "V7L", "A14T", "N96T", "K106R", "D113N", "N157S", "S165T", "R233K", "L277S", "G293V", "I307T", "G313E", "V318I", "A325L", "C326A", "H331N"], "nef": ["E15D", "T23A", "V43I", "S46R", "A50T", "-53A", "-54S", "G83A", "Y120F", "I133P", "Y135F", "L137I", "M173A", "D174E", "E176T", "K178R", "M182K", "R196Q"], "p17": ["K28H", "R30K", "L46V", "S49G", "E52D", "T53S", "T72S", "K76T", "K95R", "Q108-", "N109-", "A118V", "S126N"], "p24": ["V3I", "A6T", "I11V", "H12Y", "V26A", "S41T", "T48A", "L83V", "P92Q", "G120S", "D128E", "N183G", "S200T", "T207A"], "p6": ["P5L", "G18R", "P25L"], "p7": ["I12M", "-13I", "D48E"], "pro": ["P39S", "K45R"], "rev": ["S8P", "T14R", "Q24K", "E68A", "L73F", "Q101*", "V102I", "S103P", "S106P"], "tat": ["N7K", "T19K", "Y26H", "V36A", "Q54P", "G57R", "S61G", "P70Q", "P84Q"], "vif": ["K36Q", "V51I", "L64I", "K77R", "V85A", "L91Q", "K92R", "S116A", "Q127E", "V128I", "K141Q", "T155K", "T157K", "T159A", "R167K", "T180I"], "vpr": ["I63M", "I84V", "D91N", "G94S"], "vpu": ["T2S", "P3A", "E5V", "C7F", "A8S", "G11A", "L18I", "A19V", "R37K", "M67I", "D79Y", "N80D", "N81L"]}, "labels": {"aa": "INT: T21A, V72I, L74I, G163E; RT-p51: D121H, S173L, Q174K, I178L, A207D, S211R, E248N, K277R, V292I, P294T, D312E, I326V, I341V, K366R, V376S, K390R, K395R, V435L; RT-p66: D121H, S173L, Q174K, I178L, A207D, S211R, E248N, K277R, V292I, P294T, D312E, I326V, I341V, K366R, V376S, K390R, K395R, V435L, H483Y, R512K, I521M; gp120: N1K, A3T, E4G, N52S, N57D, E64K, T78M, N102D, T104S, -105H, -106S, -107I, -109S, -111T, -112I, -113N, -114S, -115N, -116S, -117T, -118S, -119D, -120I, -121S, R141T, N157D, N158E, S161G, N201K, D202E, K203E, E204N, P210I, K212R, E240G, K241E, M243V, I249F, D251N, T255I, L260F, P263S, K265Q, K277R, V279F, H280R, D294E, R307K, E309D, N311E, N312S, K319A, R322G, E323K, H324E, -326K, -327T, -328N, K329T, I332-, N334A, L341I, G351R, G361D, -368R, -370G, -372W, -373S, -374N, -375I, -379N, -381T, -382S, P389Q, R391K, I396V, K416Q, N432S, N433S, N435R, K474R; gp41: V2I, V7L, A14T, N96T, K106R, D113N, N157S, S165T, R233K, L277S, G293V, I307T, G313E, V318I, A325L, C326A, H331N; nef: E15D, T23A, V43I, S46R, A50T, -53A, -54S, G83A, Y120F, I133P, Y135F, L137I, M173A, D174E, E176T, K178R, M182K, R196Q; p17: K28H, R30K, L46V, S49G, E52D, T53S, T72S, K76T, K95R, Q108-, N109-, A118V, S126N; p24: V3I, A6T, I11V, H12Y, V26A, S41T, T48A, L83V, P92Q, G120S, D128E, N183G, S200T, T207A; p6: P5L, G18R, P25L; p7: I12M, -13I, D48E; pro: P39S, K45R; rev: S8P, T14R, Q24K, E68A, L73F, Q101*, V102I, S103P, S106P; tat: N7K, T19K, Y26H, V36A, Q54P, G57R, S61G, P70Q, P84Q; vif: K36Q, V51I, L64I, K77R, V85A, L91Q, K92R, S116A, Q127E, V128I, K141Q, T155K, T157K, T159A, R167K, T180I; vpr: I63M, I84V, D91N, G94S; vpu: T2S, P3A, E5V, C7F, A8S, G11A, L18I, A19V, R37K, M67I, D79Y, N80D, N81L"}}}, {"name": "A1_NODE_0000009", "node_attrs": {"div": 0.11456, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C426A", "C679A", "A680C", "T926C", "T1182C", "C1211T", "G1232A", "A1259G", "T1280C", "G1298A", "T1444C", "G1486A", "C1517T", "G1562A", "A1607G", "A1642G", "C1721T", "T1722G", "-1747C", "G1794A", "T1868C", "A2059G", "G2311A", "T2425C", "C2596T", "A2617G", "C2941A", "C3013T", "G3127A", "C3201T", "G3398A", "G3427T", "G3442A", "G3463A", "G3467A", "G3664A", "G3686A", "C3763T", "A3808C", "C3843T", "A3886G", "C4076A", "G4078A", "C4123T", "G4677A", "G4696A", "A4735G", "G4786C", "C4826T", "C5006A", "C5372A", "T5382G", "T5391C", "G5482C", "A5544C", "G5556C", "T5636C", "C5659T", "C5826T", "A5866C", "C5958A", "T6163C", "-6220G", "C6317-", "G6526A", "G6577T", "T6582C", "G6583T", "C6660T", "C6692G", "C6812A", "-6957A", "-6958T", "A6979T", "A7000-", "C7087T", "A7089C", "G7094A", "T7107A", "A7108G", "A7162G", "G7198A", "G7225A", "G7269A", "C7747G", "T7801A", "A7964G", "G7997A", "C8051A", "T8182A", "C8221T", "T8239A", "T8277C", "G8279T", "A8284G", "A8288C", "G8388A", "T8414A", "G8476T", "C8477A", "G8479A", "G8528A", "C8607T", "C8669T", "A8829T", "C8840T", "G8875A", "A8915T"], "INT": ["E11D", "A23V", "L101I"], "RT-p51": ["K11T", "A369V"], "RT-p66": ["K11T", "A369V", "V458I", "H483Q", "V531I"], "gp120": ["T35K", "T110-", "K241N", "M243T", "T269I", "S278G", "G293D", "N378-", "A380-", "N383-", "Q412P", "V414I", "V418E", "R472K"], "gp41": ["M4L", "D148E", "N166K", "R221G"], "nef": ["V16I", "S46N", "H89Y", "S163C"], "p1": ["K4R"], "p17": ["T115N"], "p2": ["V7A"], "p6": ["L15V", "V39I"], "p7": ["R7K"], "rev": ["E10A", "K39R", "S112T"], "tat": ["D2E", "V36L", "Q60H"], "vif": ["V31I", "K50R", "N140K"], "vpr": ["S93A", "S96P"], "vpu": ["I10A"]}, "labels": {"aa": "INT: E11D, A23V, L101I; RT-p51: K11T, A369V; RT-p66: K11T, A369V, V458I, H483Q, V531I; gp120: T35K, T110-, K241N, M243T, T269I, S278G, G293D, N378-, A380-, N383-, Q412P, V414I, V418E, R472K; gp41: M4L, D148E, N166K, R221G; nef: V16I, S46N, H89Y, S163C; p1: K4R; p17: T115N; p2: V7A; p6: L15V, V39I; p7: R7K; rev: E10A, K39R, S112T; tat: D2E, V36L, Q60H; vif: V31I, K50R, N140K; vpr: S93A, S96P; vpu: I10A"}}, "children": [{"name": "MT349418", "node_attrs": {"div": 0.17631, "accession": "MT349418", "clade_membership": {"value": "A1"}, "country": {"value": "CM"}, "date": {"value": 2011.0}, "Strain_name": {"value": "11CMMDC241"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "C201T", "T227A", "A261G", "-304C", "T305A", "A410C", "T422C", "G428A", "A480G", "G498C", "A515T", "G518A", "A540C", "T614G", "C636T", "T641C", "G650A", "C657A", "A669C", "A673C", "G677A", "C680T", "A697C", "A706G", "G716T", "A725C", "C741A", "A742C", "C765T", "G771A", "C772G", "G803A", "C823G", "G829A", "C845T", "C851T", "T858C", "G911A", "A941G", "G956A", "A1002G", "T1003C", "A1034G", "C1061T", "A1074G", "A1079G", "C1178T", "C1187T", "C1214T", "T1262C", "G1268A", "G1271T", "A1292G", "A1340G", "T1451G", "-1455A", "-1456A", "-1457T", "A1459T", "C1460A", "A1463G", "A1494G", "A1495G", "A1496G", "T1511C", "G1586A", "G1619A", "A1673C", "T1679C", "A1691G", "G1697A", "-1746T", "-1748C", "T1752C", "T1754-", "C1755-", "C1756-", "A1771G", "A1772G", "A1781G", "-1785G", "C1825A", "C1826G", "A1858G", "A1951G", "A1969G", "T2024C", "T2041A", "A2056G", "T2062C", "T2083C", "A2127C", "G2173A", "A2212T", "G2215A", "A2239G", "A2241G", "A2293G", "T2347C", "G2380T", "G2389A", "A2407G", "A2413G", "T2443C", "T2449G", "G2459A", "G2463A", "A2498G", "C2521T", "G2548A", "G2566A", "A2579T", "T2608C", "A2626C", "G2656A", "A2662G", "A2693G", "G2714A", "T2716G", "G2727A", "C2728A", "G2734A", "G2761A", "A2764G", "T2800C", "T2803A", "G2830A", "G2869A", "A2920G", "A2923G", "C2930T", "A2937G", "T2968G", "C2978T", "G2984A", "G3010A", "C3031A", "G3037A", "A3071G", "A3073G", "C3100G", "A3160G", "G3162A", "T3175G", "G3208A", "A3217G", "G3221A", "A3224C", "C3225T", "A3226G", "C3232T", "A3233G", "G3236A", "A3277G", "G3307A", "G3325T", "A3334G", "G3340A", "T3349C", "T3355C", "A3387G", "A3454G", "C3469T", "C3541T", "C3542A", "T3544A", "T3559C", "T3566C", "T3577C", "A3607G", "C3628T", "G3630A", "G3631A", "A3703G", "A3709G", "T3754C", "G3772A", "C3808T", "T3850G", "T3924G", "G3951A", "G3989A", "C4015T", "A4027G", "A4057G", "T4075C", "A4084G", "G4145A", "C4146A", "T4153C", "A4159G", "A4175G", "A4176G", "C4180T", "T4234C", "G4243A", "G4264A", "A4270T", "G4294A", "A4391T", "C4396T", "A4417G", "C4428T", "G4459A", "A4475G", "T4477G", "C4496T", "A4552G", "A4564G", "G4695A", "T4697A", "T4702A", "T4703C", "A4721G", "A4740T", "C4786T", "C4820A", "G4838A", "T4842G", "G4856A", "C4889T", "T4912A", "G4913A", "C4937A", "T4959C", "C4965G", "G4968A", "A4988G", "T4991C", "A5048G", "C5116A", "G5128T", "T5162A", "C5168T", "T5197C", "A5200G", "T5245C", "T5260C", "T5286C", "A5336G", "T5357A", "C5358A", "G5370A", "T5371C", "A5395G", "T5412A", "G5418A", "G5437C", "A5444C", "G5463A", "T5466C", "T5467A", "T5472C", "A5480C", "A5537T", "C5539A", "A5581G", "C5585A", "G5599A", "A5607T", "G5613A", "G5620C", "G5692C", "A5702G", "T5704A", "G5706A", "C5707T", "A5711G", "G5712A", "C5713G", "A5715T", "C5727T", "A5728T", "A5734G", "G5737A", "A5738G", "G5739A", "A5760G", "T5772C", "G5775T", "T5778C", 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"T6310-", "G6311-", "T6312-", "A6313-", "G6314-", "T6315-", "A6316-", "A6318-", "A6319-", "A6320-", "T6321-", "T6322-", "G6323-", "A6324-", "T6325-", "A6326-", "A6327-", "T6328-", "A6329-", "A6330-", "T6331-", "A6332-", "G6333-", "T6334-", "A6335-", "G6336-", "T6337-", "A6338-", "G6339-", "T6340-", "A6341-", "A6342-", "T6343-", "A6344-", "A6345-", "T6347-", "T6348-", "A6349-", "T6351C", "T6355C", "A6371C", "A6376C", "T6418C", "T6438A", "A6448T", "G6466A", "C6469T", "C6483T", "C6511T", "C6548T", "A6573G", "T6583C", "T6592G", "T6598C", "A6599C", "G6605A", "C6607T", "C6618A", "G6635A", "C6637T", "G6640A", "C6641T", "A6648C", "T6667C", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "A6695G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "T6720G", "C6721G", "A6723T", "G6779A", "A6781T", "A6786T", "A6790T", "T6793C", "C6797A", "A6801G", "T6808A", "A6810G", "A6812G", "G6821C", "-6833A", "-6834A", "-6835G", "C6843T", "C6855A", "A6858G", "C6859T", "T6895C", "T6922C", "T6932A", "G6936C", "C6951G", "-6956A", "A6959G", "T6961C", "-6963C", "C6966G", "-6967C", "T6968C", "-6969A", "-6970G", "A6971T", "-6972T", "-6973A", "-6974A", "-6975A", "-6976T", "-6980G", "-6981A", "-6982T", "-6983A", "-6984C", "-6985C", "A6987C", "A6989G", "C6993A", "G6995A", "G6997C", "C7006T", "T7015C", "C7020A", "C7024T", "G7033A", "C7114T", "C7124T", "C7127A", "G7147A", "A7151-", "A7152-", "T7153-", "A7161G", "A7164C", "T7165A", "C7174T", "T7180A", "A7238G", "A7241G", "A7273C", "A7275G", "T7309A", "A7313C", "A7373G", "A7375G", "A7402G", "C7411T", "C7463A", "A7470G", "T7489C", "G7501A", "A7504T", "A7532C", "C7590A", "A7620G", "T7622A", "A7629C", "C7658G", "A7660C", "A7668G", "G7677A", "C7690T", "T7692C", "A7693T", "T7702A", "C7703T", "A7750G", "A7756C", "A7773G", "A7791G", "A7801G", "A7828T", "T7876G", "T7879A", "A7880G", "C7926T", "A7938G", "T7968C", "C7969A", "A7977G", "A7996G", "A7998G", "G8005A", "T8007C", "T8008G", "T8016C", "G8030A", "C8047T", "G8050A", "C8071T", "C8080A", "C8147A", "T8155C", "T8171A", "A8173C", "T8176C", "G8184A", "T8196C", "A8219G", "A8222G", "G8254A", "A8264G", "A8272C", "T8281G", "C8288T", "T8290C", "T8321G", "T8322C", "G8349A", "G8350A", "G8354A", "T8366C", "C8369A", "T8371G", "A8375G", "G8393A", "A8414G", "C8415G", "C8416T", "G8424A", "A8425C", "A8446G", "T8476C", "-8487C", "-8488C", "-8489A", "-8490G", "-8491C", "-8492C", "C8500A", "T8501G", "A8502G", "G8503C", "C8543A", "G8554T", "A8558G", "T8567C", "A8570C", "G8588A", "T8595G", "A8608T", "A8643C", "T8644C", "T8645G", "A8647G", "C8648G", "C8651T", "C8666T", "C8690T", "A8701T", "A8739G", "C8751T", "T8766C", "G8767T", "T8770A", "T8786G", "T8789G", "C8791A", "C8794A", "T8795A", "G8799A", "G8805A", "G8822A", "C8831T", "A8858G", "G8868C", "A8869C", "T8870A", "A8885G", "A8886C", "T8903A", "G8905A", "G8909A", "T8913A", "T8923C", "T8947A", "C8951T", "G8991A", "T8993C", "G8994A", "T9051A"], "INT": ["D25E", "M50R", "G59E", "V72I", "I84M", "A124N", "N134G", "T206S", "T218I", "I234V"], "RT-p51": ["K39N", "K49R", "E122K", "I135V", "S162C", "E177D", "T200A", "A207T", "S211K", "K281R", "D291E", "E297K", "D312E", "I326V", "D335E", "R356K", "V376I", "T377L", "I380V", "V381I", "W410C", "K431R", "V435I"], "RT-p66": ["K39N", "K49R", "E122K", "I135V", "S162C", "E177D", "T200A", "A207T", "S211K", "K281R", "D291E", "E297K", "D312E", "I326V", "D335E", "R356K", "V376I", "T377L", "I380V", "V381I", "W410C", "K431R", "V435I", "Q483K", "S491P", "R512K"], "gp120": ["E4D", "D19E", "E21R", "D34E", "V40I", "A42V", "E59G", "E64K", "N71D", "Q86E", "N108-", "-123K", "L137I", "R141-", "K142-", "K143-", "V144-", "Y145-", "S146-", "L147-", "F148-", "Y149-", "R150-", "L151-", "D152-", "V153-", "V154-", "Q155-", "I156-", "N157-", "N158-", "N159-", "N160-", "S161-", "S162-", "Y163-", "R164-", "L165-", "I166T", "I173L", "F195Y", "P210L", "E240G", "I249L", "D251N", "T255N", "P263S", "K265T", "Y290A", "A291T", "T292G", "D294I", "E309N", "N311I", "Q315K", "K316R", "K319G", "Q320E", "E323Q", "-326K", "-327N", "T330I", "N335S", "S360T", "G361A", "T366S", "-368N", "T371-", "P389Q", "L425I", "N433-", "N435S", "A436G", "N437T", "K462E", "I463V", "K474R"], "gp41": ["I24V", "L54M", "K56R", "K77Q", "K106R", "S107T", "E109A", "Q119D", "K122R", "S125N", "I130T", "S133R", "N157S", "D163G", "I193V", "T208I", "N212S", "I222T", "E225G", "D232S", "I235T", "V238A", "A243T", "L282I", "L290I", "R294Q", "I298T", "T306A", "I307V", "I321V", "Q323H", "C326W", "I329F", "L340A"], "nef": ["G3N", "S9R", "I10R", "P25V", "E28T", "Q35R", "S45T", "A49P", "-53E", "-54A", "R71M", "Y89F", "I101P", "Y120F", "I133V", "C142L", "F143Y", "D149E", "P150Q", "A151E", "V153I", "E155K", "E176P", "M182L", "S187R", "R188H", "L191I", "R194T", "F202Y"], "p17": ["L31I", "S49G", "E55Q", "M61I", "K69Q", "D93E", "Q108K", "Q113N", "D121A", "N124S", "K127N", "Q130H"], "p2": ["T8Q", "N9Q", "-10T", "-11N", "-12I", "I13M"], "p24": ["Q4T", "H12Y", "A31G", "S33N", "I91A", "L111P", "I115V", "E180D"], "p6": ["K31R", "P36A", "P49Q"], "p7": ["K10G"], "pro": ["L10V"], "rev": ["Q24K", "R50E", "D53N", "S54A", "S61N", "P67S", "E68K", "L78I", "P100H", "S103P", "V108D", "I109L"], "tat": ["N7D", "N12K", "A21P", "N23T", "C31S", "Q35P", "Q54L", "I69V", "P70Q", "P73S", "T77A", "S87Q"], "vif": ["G37K", "F39Y", "S52C", "R67I", "D78E", "S86A", "L109Q", "D117E", "Q127E", "V128I", "P177H", "R181M", "C192*"], "vpr": ["Q8H", "L20I", "I61T", "V89T"], "vpu": ["T2S", "E5Q", "E29Q", "K32R", "L33I", "K35R", "Q36D", "R41W", "I43V", "E44R", "E56D", "-69V", "-70E", "-71M", "-72G", "-73D", "-74Y", "-75N", "-76L", "-77L"]}, "labels": {"aa": "INT: D25E, M50R, G59E, V72I, I84M, A124N, N134G, T206S, T218I, I234V; RT-p51: K39N, K49R, E122K, I135V, S162C, E177D, T200A, A207T, S211K, K281R, D291E, E297K, D312E, I326V, D335E, R356K, V376I, T377L, I380V, V381I, W410C, K431R, V435I; RT-p66: K39N, K49R, E122K, I135V, S162C, E177D, T200A, A207T, S211K, K281R, D291E, E297K, D312E, I326V, D335E, R356K, V376I, T377L, I380V, V381I, W410C, K431R, V435I, Q483K, S491P, R512K; gp120: E4D, D19E, E21R, D34E, V40I, A42V, E59G, E64K, N71D, Q86E, N108-, -123K, L137I, R141-, K142-, K143-, V144-, Y145-, S146-, L147-, F148-, Y149-, R150-, L151-, D152-, V153-, V154-, Q155-, I156-, N157-, N158-, N159-, N160-, S161-, S162-, Y163-, R164-, L165-, I166T, I173L, F195Y, P210L, E240G, I249L, D251N, T255N, P263S, K265T, Y290A, A291T, T292G, D294I, E309N, N311I, Q315K, K316R, K319G, Q320E, E323Q, -326K, -327N, T330I, N335S, S360T, G361A, T366S, -368N, T371-, P389Q, L425I, N433-, N435S, A436G, N437T, K462E, I463V, K474R; gp41: I24V, L54M, K56R, K77Q, K106R, S107T, E109A, Q119D, K122R, S125N, I130T, S133R, N157S, D163G, I193V, T208I, N212S, I222T, E225G, D232S, I235T, V238A, A243T, L282I, L290I, R294Q, I298T, T306A, I307V, I321V, Q323H, C326W, I329F, L340A; nef: G3N, S9R, I10R, P25V, E28T, Q35R, S45T, A49P, -53E, -54A, R71M, Y89F, I101P, Y120F, I133V, C142L, F143Y, D149E, P150Q, A151E, V153I, E155K, E176P, M182L, S187R, R188H, L191I, R194T, F202Y; p17: L31I, S49G, E55Q, M61I, K69Q, D93E, Q108K, Q113N, D121A, N124S, K127N, Q130H; p2: T8Q, N9Q, -10T, -11N, -12I, I13M; p24: Q4T, H12Y, A31G, S33N, I91A, L111P, I115V, E180D; p6: K31R, P36A, P49Q; p7: K10G; pro: L10V; rev: Q24K, R50E, D53N, S54A, S61N, P67S, E68K, L78I, P100H, S103P, V108D, I109L; tat: N7D, N12K, A21P, N23T, C31S, Q35P, Q54L, I69V, P70Q, P73S, T77A, S87Q; vif: G37K, F39Y, S52C, R67I, D78E, S86A, L109Q, D117E, Q127E, V128I, P177H, R181M, C192*; vpr: Q8H, L20I, I61T, V89T; vpu: T2S, E5Q, E29Q, K32R, L33I, K35R, Q36D, R41W, I43V, E44R, E56D, -69V, -70E, -71M, -72G, -73D, -74Y, -75N, -76L, -77L"}}}, {"name": "KU168256", "node_attrs": {"div": 0.16321, "accession": "KU168256", "clade_membership": {"value": "A1"}, "country": {"value": "CD"}, "date": {"value": 2002.0}, "Strain_name": {"value": "LA01AlPr"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T10G", "G49T", "A66G", "C93A", "A149G", "C150T", "G162T", "A171T", "T301A", "-304A", "C435T", "G495A", "A521C", "G524A", 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"V435M", "L452M", "T470A", "T477A", "S491L", "L517I"], "gp120": ["A3G", "E4Q", "N5-", "V16A", "E21V", "N57K", "E59V", "N71P", "S82G", "K93Q", "N102D", "T104H", "-105D", "-106N", "-107I", "-109N", "-110G", "-111N", "-112T", "-113T", "-114N", "-115S", "-116P", "-117N", "-118I", "-119T", "-120N", "-121E", "-122M", "-123G", "Y145H", "V153I", "Q155E", "N157G", "N159S", "N160S", "N201T", "D202E", "E204R", "K212R", "I256L", "N261V", "E262K", "K265N", "N267T", "V279I", "H280G", "T292A", "D294A", "Q300H", "H302Y", "N304V", "S306N", "R307K", "N312K", "K316Q", "A318V", "K319H", "Q320K", "F325W", "-328N", "N334A", "N335P", "L341I", "-368H", "-370S", "-372G", "-373N", "D384-", "T385-", "T427I", "N432I", "A436S", "N437M", "K462Q"], "gp41": ["L4F", "V28A", "S35F", "I84L", "N96A", "E110Q", "D113E", "L118Q", "D129S", "S133D", "E137D", "A156T", "S192A", "I194L", "T210I", "G220R", "R231K", "D232I", "I264V", "W286G", "I329L", "H331N", "L340F"], "nef": ["S8R", "I10M", "V11P", "P24Q", "E28V", "A32P", "H40Y", "S45I", "T48Q", "A50S", "T51-", "N52-", "W57Q", "E59D", "A60E", "E65D", "V85F", "S88G", "W102H", "Q104K", "D108Q", "E152G", "D174E", "E176D", "R188S", "L191F", "R194V"], "p1": ["S9N"], "p17": ["L31M", "A54T", "E62D", "P66S", "T84V", "N109E", "G123R", "S126G"], "p24": ["I11T", "S14A", "V26A", "I27V", "S41T", "L83V", "H87Q", "M96L", "D128E", "T171I", "E180A", "T210S", "G225S"], "p6": ["S23P", "K31-", "D32-", "R33K", "Q35P"], "pro": ["N37D", "L63Q"], "rev": ["S8A", "S34T", "R38Q", "R50N", "I55L", "I59V", "P77S", "H82R", "V104G", "T114A"], "tat": ["P3L", "E9D", "K24S", "Y32W", "K40R", "S46F", "Y47H", "Q54R", "D64N", "P75S", "V80D"], "vif": ["T20I", "N22H", "G37D", "L59I", "R63K", "R67T", "S95N", "I98V", "D113N", "Q136P", "A137T", "T155A", "P156S", "T157R", "T159I", "H183L", "R184Q", "M189R"], "vpr": ["Q11P", "N16Q", "Y50H", "A59V", "I63M"], "vpu": ["C7G", "V21I", "K31R", "K38R", "I43L", "R45K", "T63K", "D79R", "N80D", "N81F"]}, "labels": {"aa": "INT: I135V, K215R; RT-p51: T11M, K39R, D121Y, D123G, S173A, M184V, G196E, E204K, P272A, D312N, G333E, Q334H, D335G, A355G, K357R, K366R, V376G, S379G, Y405H, E413D, V435M; RT-p66: T11M, K39R, D121Y, D123G, S173A, M184V, G196E, E204K, P272A, D312N, G333E, Q334H, D335G, A355G, K357R, K366R, V376G, S379G, Y405H, E413D, V435M, L452M, T470A, T477A, S491L, L517I; gp120: A3G, E4Q, N5-, V16A, E21V, N57K, E59V, N71P, S82G, K93Q, N102D, T104H, -105D, -106N, -107I, -109N, -110G, -111N, -112T, -113T, -114N, -115S, -116P, -117N, -118I, -119T, -120N, -121E, -122M, -123G, Y145H, V153I, Q155E, N157G, N159S, N160S, N201T, D202E, E204R, K212R, I256L, N261V, E262K, K265N, N267T, V279I, H280G, T292A, D294A, Q300H, H302Y, N304V, S306N, R307K, N312K, K316Q, A318V, K319H, Q320K, F325W, -328N, N334A, N335P, L341I, -368H, -370S, -372G, -373N, D384-, T385-, T427I, N432I, A436S, N437M, K462Q; gp41: L4F, V28A, S35F, I84L, N96A, E110Q, D113E, L118Q, D129S, S133D, E137D, A156T, S192A, I194L, T210I, G220R, R231K, D232I, I264V, W286G, I329L, H331N, L340F; nef: S8R, I10M, V11P, P24Q, E28V, A32P, H40Y, S45I, T48Q, A50S, T51-, N52-, W57Q, E59D, A60E, E65D, V85F, S88G, W102H, Q104K, D108Q, E152G, D174E, E176D, R188S, L191F, R194V; p1: S9N; p17: L31M, A54T, E62D, P66S, T84V, N109E, G123R, S126G; p24: I11T, S14A, V26A, I27V, S41T, L83V, H87Q, M96L, D128E, T171I, E180A, T210S, G225S; p6: S23P, K31-, D32-, R33K, Q35P; pro: N37D, L63Q; rev: S8A, S34T, R38Q, R50N, I55L, I59V, P77S, H82R, V104G, T114A; tat: P3L, E9D, K24S, Y32W, K40R, S46F, Y47H, Q54R, D64N, P75S, V80D; vif: T20I, N22H, G37D, L59I, R63K, R67T, S95N, I98V, D113N, Q136P, A137T, T155A, P156S, T157R, T159I, H183L, R184Q, M189R; vpr: Q11P, N16Q, Y50H, A59V, I63M; vpu: C7G, V21I, K31R, K38R, I43L, R45K, T63K, D79R, N80D, N81F"}}}]}]}]}]}, {"name": "A1_NODE_0000010", "node_attrs": {"div": 0.08983999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T163A", "C362T", "A1242G", "A1350T", "-1785G", "T1790A", "T1986C", "G2902A", "T3530C", "C3542T", "G3630A", "G3631A", "A3955G", "G4151T", "T4412C", "A4717T", "C4826A", "G4923A", "C5062T", "T5102C", "T5160C", "G5161A", "T5179G", "G5545A", "A5649G", "G5652A", "T5791G", "A5794G", "G5802A", "G5805A", "-6169T", "-6170G", "-6171T", "-6172C", "-6173A", "-6174A", "-6177A", "-6179A", "C6184T", "G6339A", "G6605A", "C6618A", "A6796G", "T6808C", "A6822C", "-6833A", "-6834A", "T6875C", "T6928C", "-6973C", "-6974A", "-6983T", "-6984C", "T7059C", "G7072A", "C7127A", "T7624C", "T7642C", "C7690G", "G7992A", "C8080A", "G8279T", "T8348G", "A8469G", "T8480C", "A8657G", "C8684A", "T8740C", "A8744G", "C9078T"], "INT": ["I60M", "V126F"], "RT-p66": ["H483Y", "R512K"], "gp120": ["T104S", "-112T", "D251N", "T255N", "K265I", "K319N", "-326E", "-370N", "-373S", "M406I", "L425I"], "gp41": ["D129Q", "G230D", "L290I"], "nef": ["I43V", "I133T", "M182I", "L191F"], "p24": ["T207S"], "p6": ["P36V"], "rev": ["L78I"], "vif": ["Y44F", "H80Q", "D113N", "T159I", "C192H"], "vpr": ["M19T"], "vpu": ["T2L"]}, "labels": {"aa": "INT: I60M, V126F; RT-p66: H483Y, R512K; gp120: T104S, -112T, D251N, T255N, K265I, K319N, -326E, -370N, -373S, M406I, L425I; gp41: D129Q, G230D, L290I; nef: I43V, I133T, M182I, L191F; p24: T207S; p6: P36V; rev: L78I; vif: Y44F, H80Q, D113N, T159I, C192H; vpr: M19T; vpu: T2L"}}, "children": [{"name": "A1_NODE_0000011", "node_attrs": {"div": 0.09874, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A380G", "G518A", "C636T", "T782A", "G803A", "A820G", "C823G", "C1094T", "G1256A", "G1271T", "A1292C", "G1424A", "G1568A", "G1589A", "C1903T", "C2071T", "A2127C", "A2154G", "G2156A", "C2296T", "G2311A", "C2326T", "A2350G", "A2386T", "C2499T", "T2612G", "G2683A", "A2699G", "C2728T", "A2839C", "G2947A", "G3166A", "G3217A", "A3292G", "G3442A", "G3463A", "T3754C", "G3770A", "G3772A", "A4555G", "A4558C", "G4766A", "G5361A", "A5480C", "G5635A", "G5706A", "T5731A", "A5748T", "-5824A", "T5944A", "C5998T", "G6044A", "-6175T", "A6192C", "T6193C", "C6263T", "G6303A", "T6307G", "A6338C", "T6340G", "G6464A", "A6575G", "-6835G", "T6883A", "-6994G", "T7003C", "C7020A", "G7688C", "T7921C", "G7943A", "A8011C", "T8159G", "T8172C", "C8242G", "A8424G", "A8573G", "A8915T"], "RT-p51": ["K11T", "K20R", "V21I", "T39K", "T135I", "S173A", "I202V", "E248D"], "RT-p66": ["K11T", "K20R", "V21I", "T39K", "T135I", "S173A", "I202V", "E248D", "E514D", "V559I"], "gp120": ["N159S", "D294I", "T371-", "-381E", "-382S", "V402T", "R472K"], "gp41": ["W286G"], "nef": ["E151D", "R194I"], "p24": ["K30R", "A31G"], "pro": ["L63A"], "rev": ["V104G"], "vpr": ["G86S"], "vpu": ["L42I", "R47S", "T63K"]}, "labels": {"aa": "RT-p51: K11T, K20R, V21I, T39K, T135I, S173A, I202V, E248D; RT-p66: K11T, K20R, V21I, T39K, T135I, S173A, I202V, E248D, E514D, V559I; gp120: N159S, D294I, T371-, -381E, -382S, V402T, R472K; gp41: W286G; nef: E151D, R194I; p24: K30R, A31G; pro: L63A; rev: V104G; vpr: G86S; vpu: L42I, R47S, T63K"}}, "children": [{"name": "A1_NODE_0000012", "node_attrs": {"div": 0.10592, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "G524A", "T596C", "G785A", "G1278A", "C2353T", "G2389A", "G2566A", "A2625G", "T2728G", "T2770C", "A2809G", "A3043G", "G3168A", "A3484G", "A3637C", "G3643A", "G3675A", "A3715G", "G4228A", "G4696A", "T4697G", "A4735G", "A5094G", "C5186A", "A5431G", "C5491T", "T5636C", "A5718G", "-5813T", "-5814G", "-5815G", "-5816A", "-5820G", "-5821G", "-5822G", "-5823G", "A5846T", "G5963A", "G6029A", "A6158G", "-6167G", "-6215A", "-6219A", "A6282G", "G6323A", "G6463A", "T6738C", "G6774A", "A6790C", "-6830G", "A6854G", "-6956T", "-6972G", "-6998T", "-6999C", "A7158G", "G7269A", "A7275G", "G7289C", "A7701G", "G7765A", "T7912C", "A7929T", "A8029G", "C8095A", "G8170A", "A8276C", "C8323A", "T8366C", "T8483C", "A8684G", "C8687T", "A8746T", "G8929A"], "RT-p51": ["E177G", "S211R", "R358K"], "RT-p66": ["E177G", "S211R", "R358K", "G527E"], "gp120": ["E59K", "N102E", "-105D", "K143R", "N160S", "S161N", "R307K", "K312N", "N334A", "-368Y", "N435S", "K474R", "E479Q"], "gp41": ["H209L", "I290S", "I325L"], "nef": ["Y135F"], "p24": ["S14A", "E180D", "E187D"], "rev": ["S61G", "L83I", "V108I"], "tat": ["T19A", "Q35P", "I74L"], "vif": ["G37E", "T170A"], "vpr": ["H28N"]}, "labels": {"aa": "RT-p51: E177G, S211R, R358K; RT-p66: E177G, S211R, R358K, G527E; gp120: E59K, N102E, -105D, K143R, N160S, S161N, R307K, K312N, N334A, -368Y, N435S, K474R, E479Q; gp41: H209L, I290S, I325L; nef: Y135F; p24: S14A, E180D, E187D; rev: S61G, L83I, V108I; tat: T19A, Q35P, I74L; vif: G37E, T170A; vpr: H28N"}}, "children": [{"name": "AF484509", "node_attrs": {"div": 0.14039000000000001, "accession": "AF484509", "clade_membership": {"value": "A1"}, "country": {"value": "UG"}, "date": {"value": 1998.0}, "Strain_name": {"value": "98UG57136"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A412G", "A417C", "G424A", "A461C", "T479C", "A513G", "T525C", "C537T", "T571A", "C606A", "A654C", "G665A", "G690A", "C710T", 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"G6224A", "G6225C", "A6229C", "A6232G", "T6289C", "A6318C", "A6326G", "T6328C", "T6331C", "T6337C", "C6338A", "A6339C", "G6340C", "T6373A", "T6421C", "C6427T", "A6464G", "C6483T", "A6491G", "G6569A", "G6575A", "A6576G", "G6583A", "C6601T", "A6605G", "G6611A", "C6612T", "C6641T", "A6647G", "A6654G", "C6660T", "-6689G", "G6732A", "T6733C", "C6758T", "C6769T", "C6777G", "A6778G", "A6780G", "C6807T", "C6808T", "A6809G", "A6821G", "C6822T", "A6833-", "T6849C", "A6926G", "-6957A", "-6958T", "-6962A", "-6963C", "C6964T", "A6965T", "-6966G", "-6967G", "-6968A", "-6969A", "-6970T", "-6975C", "-6976T", "-6977G", "-6979A", "T6988A", "A7007-", "C7008-", "T7009-", "A7012T", "G7101T", "G7106A", "T7107A", "C7114T", "G7147A", "A7148G", "A7149G", "A7155G", "A7160G", "A7163C", "T7192C", "A7219G", "G7304A", "C7324G", "T7386C", "C7397G", "A7398C", "T7403C", "G7459A", "A7470G", "G7501T", "A7523G", "A7533G", "A7641G", "A7660G", "T7702C", "G7717A", "C7762T", "G7873A", "A7937G", "A7938T", "C8011A", "C8065T", "A8128G", "G8184A", "T8209C", "T8210C", "C8213T", "G8241A", "A8258G", "G8317A", "A8399G", "G8407A", "G8424A", "G8469A", "G8476T", "A8519G", "G8522A", "A8531C", "A8540G", "C8552T", "G8561A", "C8568T", "G8597T", "A8643G", "A8656G", "C8688A", "A8701T", "T8711C", "T8720C", "A8834C", "T8843C", "G8888A", "G8905A", "T8915A", "A8918G", "A8980T", "T8993-", "T9051C", "T9078C", "T9084G", "T9094C", "-9109T", "T9115C", "A9134T"], "INT": ["T97A", "R107G", "V165I", "I234V", "V249I"], "RT-p51": ["V60I", "F130S", "I178V", "I179V", "T200A", "D248N", "V376A", "K390R", "E396D", "V435E", "A437V"], "RT-p66": ["V60I", "F130S", "I178V", "I179V", "T200A", "D248N", "V376A", "K390R", "E396D", "V435E", "A437V", "Y483H", "E492G", "L517I", "Q520L"], "gp120": ["K18R", "A32S", "V37M", "N71K", "S104T", "-106M", "-107K", "T110-", "T112-", "E125-", "I126-", "K127-", "N128-", "Q155P", "N157D", "S162T", "P210L", "N213D", "E239K", "K241R", "M243I", "N251D", "A253I", "P263S", "I265E", "N267S", "T269I", "H280R", "G293D", "I295T", "H302Y", "T308R", "E309G", "A318V", "N319E", "E323V", "I332T", "N358D", "N370T", "-371W", "-372N", "-374T", "-375E", "-377S", "N378K", "-379S", "T385-", "P389Q", "T402A", "R416M", "V418K", "N432G", "N434S", "T436E", "N437P"], "gp41": ["A1T", "V28A", "Q32A", "K56R", "Q66H", "R74G", "K77R", "D113G", "N133S", "N212V", "R294Q", "L304F", "G313E", "I319V"], "nef": ["E28K", "V43I", "S45I", "E63D", "L85F", "I101V", "K105R", "H116N", "Y120F", "R188H", "F191L", "R196Q"], "p1": ["S8P"], "p17": ["K26R", "K28Q", "R30K", "E42D", "I60V", "M61I", "L68F", "F79Y", "I107L", "A119T"], "p2": ["T8Q", "-10A", "-11A", "-12S"], "p24": ["L15I", "S16T", "Q50G", "I58M", "H87Q", "T171C", "G183N", "G225S"], "p6": ["S3N", "P5L", "I14L", "V36N"], "pro": ["L10V", "G16E", "I54T", "N83D"], "rev": ["A15V", "R17K", "K30S", "L73F", "T94A"], "tat": ["N23S", "K24T", "I69V", "T77S"], "vif": ["L24V", "F39S", "R47M", "H48N", "K50G", "V65I", "V66I", "S95R", "N113K", "K160R", "S186N"], "vpr": ["H45Y"], "vpu": ["E5Q", "V10A", "K31I", "K32R", "L34R", "R37K", "I42L", "S47R", "S62A", "-69N", "-70Y", "D78-", "N80D", "N81L"]}, "labels": {"aa": "INT: T97A, R107G, V165I, I234V, V249I; RT-p51: V60I, F130S, I178V, I179V, T200A, D248N, V376A, K390R, E396D, V435E, A437V; RT-p66: V60I, F130S, I178V, I179V, T200A, D248N, V376A, K390R, E396D, V435E, A437V, Y483H, E492G, L517I, Q520L; gp120: K18R, A32S, V37M, N71K, S104T, -106M, -107K, T110-, T112-, E125-, I126-, K127-, N128-, Q155P, N157D, S162T, P210L, N213D, E239K, K241R, M243I, N251D, A253I, P263S, I265E, N267S, T269I, H280R, G293D, I295T, H302Y, T308R, E309G, A318V, N319E, E323V, I332T, N358D, N370T, -371W, -372N, -374T, -375E, -377S, N378K, -379S, T385-, P389Q, T402A, R416M, V418K, N432G, N434S, T436E, N437P; gp41: A1T, V28A, Q32A, K56R, Q66H, R74G, K77R, D113G, N133S, N212V, R294Q, L304F, G313E, I319V; nef: E28K, V43I, S45I, E63D, L85F, I101V, K105R, H116N, Y120F, R188H, F191L, R196Q; p1: S8P; p17: K26R, K28Q, R30K, E42D, I60V, M61I, L68F, F79Y, I107L, A119T; p2: T8Q, -10A, -11A, -12S; p24: L15I, S16T, Q50G, I58M, H87Q, T171C, G183N, G225S; p6: S3N, P5L, I14L, V36N; pro: L10V, G16E, I54T, N83D; rev: A15V, R17K, K30S, L73F, T94A; tat: N23S, K24T, I69V, T77S; vif: L24V, F39S, R47M, H48N, K50G, V65I, V66I, S95R, N113K, K160R, S186N; vpr: H45Y; vpu: E5Q, V10A, K31I, K32R, L34R, R37K, I42L, S47R, S62A, -69N, -70Y, D78-, N80D, N81L"}}}, {"name": "MT942795", "node_attrs": {"div": 0.15084999999999998, "accession": "MT942795", "clade_membership": {"value": "A1"}, "country": {"value": "RW"}, "date": {"value": 2006.0}, "Strain_name": {"value": "R72M_175027_4"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T154G", "C155T", "A303G", "-304A", "-305A", "T362C", "C435A", "A492T", "A512G", "A518G", "C539T", "C558A", "A563G", "T602C", "C603A", "A605G", "T614G", "A654-", "T655-", "A656-", "C657-", "A658-", "A659-", "A660-", "A661-", "T662-", "A663-", "A664-", "G665-", "G667T", "A670G", "C684A", "G686A", "C698T", "C707T", "G709A", "G712A", "A762G", "G770A", "T774C", "G823C", "T824C", "C1051G", "G1089A", "A1124G", "A1226G", "A1263T", "G1302A", "T1350C", "T1409C", "G1430A", "T1451G", "G1487A", "G1508A", "C1536T", "A1538G", "G1543A", "A1588G", "A1620C", "G1657A", "G1661A", "A1743G", "A1772G", "-1786T", "G1794A", "G1835A", "A1932G", "G1963A", "C1985A", "A2007G", "A2023G", "T2083C", "A2125G", "G2134A", "G2155A", "T2158C", "A2223G", "T2269C", "A2314G", "A2329G", "A2404G", "C2434T", "G2463A", "C2503T", "T2527C", "T2542A", "C2575T", "C2596T", "C2615A", "A2683G", "T2803C", "C2818A", "G2830A", "G2833A", "G2909C", "A2974G", "A3192G", "C3223T", "A3224T", "G3236A", "T3355A", "A3382G", "G3409A", "T3424C", "G3427A", "A3460G", "A3478G", "G3508A", "A3539G", "A3583G", "C3600T", "A3642C", "G3664A", "G3718A", "G3769A", "A3805G", "T3820C", "G3825A", "A3919G", "G3925A", "G3952A", "A4114G", "G4243A", "G4262C", "G4263A", "G4264A", "A4293G", "A4475C", "C4496T", "A4498G", "A4525G", "A4538G", "C4558A", "A4650C", "C4665T", "G4677A", "T4701A", "T4702A", "T4703G", "T4717A", "C4754T", "T4769G", "A4806C", "A4811G", "G4818A", "A4819G", "A4865G", "A4872T", "T4917C", "C4937A", "A5048G", "A5061G", "G5087A", "C5134A", "A5159G", "A5282C", "A5284C", "A5285T", "C5333T", "T5371G", "G5385A", "C5412T", "A5421G", "A5433C", "G5444A", "C5445T", "T5451C", "G5482A", "T5483G", "T5484A", "G5493A", "C5511A", "G5534A", "A5535G", "A5545C", "G5546A", "A5548C", "G5556A", "A5557G", "G5561A", "T5568C", "T5602G", "T5611A", "C5612A", "C5614T", "T5616A", "C5625T", "T5628G", "C5659T", "A5694G", "A5696G", "T5704G", "A5706G", "G5737A", "G5739A", "A5760G", "C5789-", "A5790-", "G5791-", "A5796G", "C5797G", "T5798A", "G5800T", "A5802G", "A5804C", "T5807A", "G5808A", "-5809C", "-5810T", "-5811T", "-5812C", "-5817T", "-5818G", "-5819G", "C5833T", "G5842T", "A5843T", "A5845G", "G5864A", "A5866C", "C5884T", "C5887T", "T5911C", "A5916T", "A5926G", "A5945C", "G5954A", "T5964A", "A5995T", "A6022G", "A6023G", "T6025A", "G6046T", "A6065G", "A6131C", "T6155C", "T6160A", "T6163C", "T6171C", "-6178C", "-6180A", "C6181T", "C6183G", "-6195G", "-6196T", "-6198A", "-6199C", "-6201C", "-6203A", "-6204C", "-6205C", "-6206A", "-6207G", "-6208C", "-6209C", "-6210C", "-6211C", "A6212C", "-6213C", "-6214T", "-6216T", "-6217C", "-6218G", "-6220G", "G6224T", "A6230G", "T6246A", "A6273G", "C6278A", "G6280A", "A6303G", "A6320C", "A6329G", "T6334C", "G6336A", "T6355C", "A6359G", "G6368A", "T6382C", "G6458A", "A6465C", "G6466A", "A6470G", "T6472G", "C6477A", "C6487T", "A6488G", "T6493A", "G6526A", "A6535G", "G6547A", "A6573G", "A6599T", "A6620C", "G6626A", "A6636T", "G6638A", "A6648C", "T6655C", "T6688-", "T6690-", "A6691-", "C6692-", "G6693-", "A6695G", "-6697A", "-6698C", "-6699A", "-6700C", "-6701A", "-6702T", "A6765C", "G6771A", "A6781G", "A6788G", "C6797A", "A6800G", "G6803A", "A6811C", "-6831A", "-6832A", "G6835C", "A6836-", "A6837-", "C6838-", "T6863A", "T6876C", "T6916C", "T6932A", "C6937T", "A6959-", "-6962G", "-6963T", "C6964G", "-6966A", "-6967T", "-6968G", "-6969G", "-6970C", "-6975T", "-6976G", "-6977C", "A6978T", "-6979G", "-6980G", "-6981G", "-6982G", "C6984T", "G6990A", "A6996G", "C7014T", "T7015A", "A7020C", "C7024T", "A7057G", "G7058A", "A7065G", "A7072G", "C7088A", "A7089G", "A7090T", "G7094A", "T7117A", "T7153G", "A7161C", "C7164A", "G7182T", "A7240G", "A7268G", "C7328T", "A7342T", "A7348T", "G7366A", "A7399G", "G7477A", "C7561A", "T7604A", "G7608C", "T7622A", "A7626T", "G7633A", "C7655T", "C7658G", "A7668G", "G7677A", "G7690A", "T7699C", "T7702G", "C7723T", "C7747G", "A7800G", "C7801A", "A7818G", "A7826G", "G7831A", "T7844C", "A7903T", "A7937C", "T7948A", "A7964G", "C7999A", "A8014T", "A8023G", "A8032G", "G8050A", "G8055A", "T8091G", "G8102-", "C8103-", "A8104-", "G8105-", "C8106-", "G8107-", "A8108-", "G8109-", "G8110-", "A8111-", "C8112-", "T8113-", "G8114-", "T8115-", "G8116-", "G8117-", "A8118-", "A8119-", "C8120-", "T8121-", "T8122-", "T8155C", "G8159A", "G8160A", "T8164C", "A8173C", "T8176C", "G8181T", "C8183A", "A8191G", "A8195C", "A8208G", "T8218C", "A8228G", "A8275G", "T8281C", "C8291A", "C8294A", "G8304C", "A8308G", "G8329A", "G8330A", "C8331T", "G8349A", "G8385C", "G8393A", "C8406A", "T8414C", "A8429G", "A8455C", "T8485C", "-8487G", "-8488G", "-8489T", "A8493-", "A8494-", "T8495-", "T8505A", "G8588A", "G8654A", "A8666T", "C8741T", "C8751T", "G8793C", "T8795G", "G8816A", "A8834G", "G8870A", "A8879G", "T8887A", "A8892C", "A8912C", "A8917C", "T8923C", "C8928A", "A8954G", "G8955A", "C8990T", "T9051A", "T9068C", "T9097G", "-9108A", "A9134G", "T9180C", "C9181T"], "INT": ["S17N", "M50I", "G163Q", "K173R", "I234L", "S255G"], "RT-p51": ["K39T", "K43R", "S123N", "Q174K", "A272P", "K366R", "M377L", "V381I"], "RT-p66": ["K39T", "K43R", "S123N", "Q174K", "A272P", "K366R", "M377L", "V381I", "I482V", "A502V", "E516A"], "gp120": ["E4N", "E21V", "K31Q", "D34N", "V37K", "I56M", "N57E", "E64N", "N71D", "K93Q", "-106A", "-107N", "-109N", "T110S", "-111N", "-113T", "-114S", "-115S", "-116P", "-117P", "-118I", "-119A", "-120P", "I126V", "F131Y", "K140R", "Q142K", "K150R", "I156L", "S159D", "S162Q", "N169D", "A172T", "D202N", "E204T", "N206E", "T208K", "K212E", "N213K", "E240G", "K241D", "V242K", "M243V", "I249F", "I256L", "V258I", "N261I", "E262K", "I265T", "I294A", "N304T", "S306N", "N312D", "Q315K", "K316E", "V317I", "E323T", "S337T", "L341P", "S360T", "N369V", "-371G", "-374M", "-375L", "-376G", "-377L", "-379N", "E381G", "T387I", "Q404R", "I406M", "Q412S", "V414I", "N433K", "G443V", "K472E"], "gp41": ["L9F", "S101T", "S102T", "S107T", "Q108L", "Q119E", "K122R", "S125N", "N133R", "D148E", "N166R", "K172R", "I175V", "M176I", "N212H", "R221G", "D232E", "L237F", "S251N", "F263C", "A267L", "A268G", "R269H", "T270S", "V271S", "E272L", "L273Q", "L274G", "G275L", "G286K", "G293V", "I298L", "N302S", "I309V", "L330I", "H331N", "R334T", "A343I"], "nef": ["G3S", "E15Q", "Q22R", "D38A", "I48T", "N49G", "-53S", "-54A", "C55-", "A56-", "E108D", "D151Q", "I182K", "K184Q", "K192T", "I194T", "R196K", "D205N"], "p1": ["S9N"], "p17": ["L34I", "T53S", "L75I", "Q90K", "D93E", "Q108R", "N109Q", "S111T", "K112Q", "Q113K", "K114-", "T115-", "Q116-", "Q117-", "S125N", "S126N"], "p24": ["I11V", "G31A", "T107S", "G120S", "T171A", "T178S", "G183S", "V191I", "S207P"], "p6": ["T22A", "V39I"], "p7": ["R26K", "K41R"], "pro": ["V13I", "K45R", "A63T", "K70R"], "rev": ["D7S", "E10D", "E11N", "R14K", "V16I", "I18T", "K30T", "S34T", "K39R", "Q51K", "I55L", "S56C", "I59V", "T62A", "A68T", "C85-", "S86-", "E87-", "D88-", "C89-", "G90-", "T91-", "S103P", "G104E", "S106P", "I109L", "S112*", "K115E", "N116T"], "tat": ["V36R", "R53K", "R57Q", "T58P", "S61G", "S62N", "Q76H", "V80D"], "vif": ["N22H", "H27Y", "V31I", "F39K", "F44Y", "K50R", "D61E", "T74P", "D78S", "T96S", "Y111H", "D117E", "R132S", "I159V", "P183H"], "vpr": ["T19A", "I60L", "I61L", "S86R", "V89G", "G94S"], "vpu": ["L2N", "P3S", "C7W", "V10T", "Y30C", "L33V", "E44K", "L61D", "S62L", "K63A", "L64K", "V65L", "E66L", "M67D", "-72G", "-73N", "-74Y", "-75D", "-76F", "-77G", "-79F", "N80V"]}, "labels": {"aa": "INT: S17N, M50I, G163Q, K173R, I234L, S255G; RT-p51: K39T, K43R, S123N, Q174K, A272P, K366R, M377L, V381I; RT-p66: K39T, K43R, S123N, Q174K, A272P, K366R, M377L, V381I, I482V, A502V, E516A; gp120: E4N, E21V, K31Q, D34N, V37K, I56M, N57E, E64N, N71D, K93Q, -106A, -107N, -109N, T110S, -111N, -113T, -114S, -115S, -116P, -117P, -118I, -119A, -120P, I126V, F131Y, K140R, Q142K, K150R, I156L, S159D, S162Q, N169D, A172T, D202N, E204T, N206E, T208K, K212E, N213K, E240G, K241D, V242K, M243V, I249F, I256L, V258I, N261I, E262K, I265T, I294A, N304T, S306N, N312D, Q315K, K316E, V317I, E323T, S337T, L341P, S360T, N369V, -371G, -374M, -375L, -376G, -377L, -379N, E381G, T387I, Q404R, I406M, Q412S, V414I, N433K, G443V, K472E; gp41: L9F, S101T, S102T, S107T, Q108L, Q119E, K122R, S125N, N133R, D148E, N166R, K172R, I175V, M176I, N212H, R221G, D232E, L237F, S251N, F263C, A267L, A268G, R269H, T270S, V271S, E272L, L273Q, L274G, G275L, G286K, G293V, I298L, N302S, I309V, L330I, H331N, R334T, A343I; nef: G3S, E15Q, Q22R, D38A, I48T, N49G, -53S, -54A, C55-, A56-, E108D, D151Q, I182K, K184Q, K192T, I194T, R196K, D205N; p1: S9N; p17: L34I, T53S, L75I, Q90K, D93E, Q108R, N109Q, S111T, K112Q, Q113K, K114-, T115-, Q116-, Q117-, S125N, S126N; p24: I11V, G31A, T107S, G120S, T171A, T178S, G183S, V191I, S207P; p6: T22A, V39I; p7: R26K, K41R; pro: V13I, K45R, A63T, K70R; rev: D7S, E10D, E11N, R14K, V16I, I18T, K30T, S34T, K39R, Q51K, I55L, S56C, I59V, T62A, A68T, C85-, S86-, E87-, D88-, C89-, G90-, T91-, S103P, G104E, S106P, I109L, S112*, K115E, N116T; tat: V36R, R53K, R57Q, T58P, S61G, S62N, Q76H, V80D; vif: N22H, H27Y, V31I, F39K, F44Y, K50R, D61E, T74P, D78S, T96S, Y111H, D117E, R132S, I159V, P183H; vpr: T19A, I60L, I61L, S86R, V89G, G94S; vpu: L2N, P3S, C7W, V10T, Y30C, L33V, E44K, L61D, S62L, K63A, L64K, V65L, E66L, M67D, -72G, -73N, -74Y, -75D, -76F, -77G, -79F, N80V"}}}]}, {"name": "A1_NODE_0000013", "node_attrs": {"div": 0.10313, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G378A", "C379T", "G386A", "C1062A", "T1444C", "T1451A", "G2380A", "C3589T", "G4267A", "T4805G", "G5086A", "A5335G", "T5356A", "G5363A", "G5463A", "G5619A", "T5778C", "T6148C", "C6166T", "C6187T", "-6199T", "G6311A", "A6324G", "G6451A", "A6776G", "C7156T", "A7162T", "C7574A", "C7801A", "T8008A", "A8130G", "T8171A", "A8264G", "G8354A"], "gp120": ["N5-"], "gp41": ["L91I", "N166K", "I321V"], "nef": ["I182R"], "p17": ["A15M"], "p2": ["V7A"], "p24": ["P111T"], "rev": ["S54T", "I55L", "V108D"], "vpu": ["V10I"]}, "labels": {"aa": "gp120: N5-; gp41: L91I, N166K, I321V; nef: I182R; p17: A15M; p2: V7A; p24: P111T; rev: S54T, I55L, V108D; vpu: V10I"}}, "children": [{"name": "AF484508", "node_attrs": {"div": 0.14279999999999998, "accession": "AF484508", "clade_membership": {"value": "A1"}, "country": {"value": "UG"}, "date": {"value": 1998.0}, "Strain_name": {"value": "98UG57135"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G542C", "C583T", "T635C", "T662G", "A683G", "G690A", "C698G", "C765T", "T824C", "A873G", "C1040T", "C1115T", "G1139A", "G1242A", "T1253C", "G1268A", "T1271G", "C1292A", "C1304T", "T1335C", "A1346G", "G1394A", "G1404A", "T1422C", "T1439C", "G1474A", "A1480G", "G1488A", "A1495G", "G1498A", "A1538T", "C1541A", "A1588G", "A1591G", "A1592G", "G1619A", "T1646C", "A1700G", "A1709G", "A1719C", "A1735G", "A1742G", "-1746T", "-1747C", "-1748C", "T1749C", "C1751T", "T1754G", "C1756A", "A1758G", "-1786C", "A1839G", "A1840G", "G1845A", "A1851G", "C1913T", "A1932G", "T1954G", "A1982G", "C1985G", "G2027A", "T2086C", "T2101A", "C2127A", "C2211A", "G2215A", "C2263T", "C2299T", "C2356T", "A2362G", "T2383C", "G2431A", "G2435A", "A2462G", "C2464A", "A2508C", "C2533T", "G2548A", "T2581C", "A2626C", "A2794G", "C2839T", "C2845A", "T2905C", "G2909C", "C2960T", "G2972A", "A2975C", "C3056T", "A3076G", "A3079G", "A3103G", "A3130C", "G3169A", "G3173A", "A3205G", "G3208A", "C3223T", "A3258G", "A3274T", "A3283C", "A3334C", "G3398A", "T3412A", "G3431T", "G3508A", "A3524G", "C3541A", "T3551C", "A3578G", "A3630G", "T3652C", "G3667A", "G3679A", "A3685G", "A3709T", "C3712T", "G3925A", "T3943C", "C4021A", "A4030G", "G4037C", "A4064G", "A4096G", "A4105G", "G4109A", "T4110C", "A4178G", "T4191A", "G4243A", "A4323G", "C4428T", "A4475C", "T4543G", "C4620T", "C4652T", "A4745G", "T4769G", "T4776C", "G4786C", "C4800T", "T4832C", "C4857A", "T4858A", "C4937G", "T4979C", "A4988C", "C5006T", "A5024G", "T5073C", "G5128-", "A5146G", "A5173G", "T5275A", "C5351A", "G5385A", "A5396G", "C5412G", "G5418A", "G5444A", "T5466C", "A5471T", "C5480A", "G5482A", "T5483G", "T5488G", "A5544C", "T5553G", "G5556C", "A5594G", "A5607G", "T5611C", "C5614A", "G5644A", "C5659T", "T5679C", "T5695A", "A5696T", "T5704A", "G5737A", "A5738G", "T5781C", "T5787C", "A5790G", "C5792A", "C5797T", "T5799G", "T5801C", "G5803A", "A5806C", "G5808T", "-5812G", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "T5827C", "A5843C", "A5845T", "G5856A", "T5857G", "A5867-", "G5882A", "A5914G", "A5944G", "A5947G", "T5956A", "C5958A", "A6030G", "G6076C", "A6086G", "A6092G", "C6110G", "G6165A", "-6167C", "T6169G", "A6176G", "-6178C", "A6179G", "-6180A", "C6181G", "C6183A", "A6185C", "A6191C", "C6192T", "-6195G", "-6196T", "-6198A", "-6201T", "A6212-", "G6225A", "A6226G", "A6229C", "A6230C", "A6234G", "A6261T", "A6276C", "A6277T", "T6287C", "C6317G", "T6325G", "A6330G", "T6331C", "T6355C", "G6379A", "T6382C", "T6436G", "T6457C", "C6483T", "C6496T", "A6573G", "C6632T", "C6637A", "C6641G", "A6647C", "C6660G", "A6668G", "A6669G", "-6689G", "G6693C", "-6697G", "A6703-", "C6713A", "C6752A", "A6780C", "G6796A", "A6799G", "A6800G", "C6824T", "T6860A", "T6876C", "A6880G", "T6922C", "G6935A", "A6947G", "-6962G", "-6963G", "-6966C", "-6967T", "-6968G", "-6969A", "-6970G", "-6972A", "-6975T", "-6976A", "-6977A", "A6978C", "-6979G", "-6980G", "-6981A", "-6982G", "C6993T", "G6995A", "G6997C", "A7000-", "A7001-", "A7002-", "C7003-", "A7007T", "C7014T", "T7015A", "A7089C", "G7106C", "T7107A", "G7147A", "T7153C", "A7155G", "A7158C", "T7159A", "A7163-", "C7164-", "T7165-", "T7173C", "A7186G", "T7204C", "A7241C", "A7297G", "A7313C", "C7324T", "C7328T", "C7411T", "G7508A", "A7522G", "T7530C", "A7629G", "A7660G", "C7688A", "A7689C", "G7690C", "T7702G", "A7722C", "A7734T", "G7735A", "C7742A", "C7792A", "G7835A", "G7918A", "G7947A", "G7997C", "A8032G", "G8055A", "C8092A", "A8093G", "A8099C", "A8111G", "G8133A", "G8135A", "G8137T", "C8172T", "A8173C", "A8195C", "T8206C", "C8213G", "G8255A", "C8291T", "C8293A", "C8296T", "G8317A", "A8402G", "G8407A", "T8451C", "C8460T", "G8476C", "G8508A", "T8546C", "T8583C", "C8585T", "A8586C", "T8595A", "C8648T", "G8654A", "A8666G", "A8684C", "A8701T", "T8795C", "A8834C", "A8837G", "A8846G", "A8859G", "T8887G", "G8888A", "T8889C", "A8892C", "G8905T", "A8917G", "A8922C", "G8945T", "G8982A", "T8993G", "T9097A", "-9108C"], "INT": ["M50I", "V88L", "T97A", "V112T", "I135V", "F139Y", "H183R", "T218I", "I234L", "D256E", "A282V"], "RT-p51": ["T11K", "A114T", "S123G", "E138A", "E177D", "D250E", "A272P", "V293I", "T294P", "P321S", "A360T", "K388R", "E396D", "E413D", "V435I"], "RT-p66": ["T11K", "A114T", "S123G", "E138A", "E177D", "D250E", "A272P", "V293I", "T294P", "P321S", "A360T", "K388R", "E396D", "E413D", "V435I", "A446S", "T477A", "I495V", "K512R", "D514E"], "gp120": ["S1K"], "gp41": ["I4L", "L9F", "V69I", "L76P", "N109S", "Q129T", "N133K", "N140T", "K144I", "Q147K", "D163E", "V178I", "G215D", "D232H", "S251N", "F263L", "I264V", "I266L", "T270A", "L277N", "G278S", "I298L", "L304V", "V318I", "L340F"], "nef": ["I20M", "H40Y", "S45T", "A56T", "Y81H", "K82Q", "L85M", "Y120F", "I168M", "M173V", "W183R", "K184Q", "R188L", "K192R", "I194L", "E201D"], "p17": ["M61I", "K69N", "A83V", "N109K", "A119T", "D121E"], "p24": ["H12Y", "S14A", "T48A", "G225S"], "p6": ["I14L", "E19G", "I21M", "-26Q", "K27E", "V36A"], "p7": ["R3K", "N5S", "G8S", "K10R", "R11K", "K41R", "E42G"], "pro": ["K14R", "G16E", "Q18R", "P39S", "K45R", "I62V", "V77I"], "rev": ["E10A", "L13R", "R14T", "R50T", "T62A", "H82S", "D84A", "D88G", "G96Q", "V97P", "I109L", "N116T"], "tat": ["N7S", "N12K", "Y32F", "V36S", "F38V", "Q60H", "V80I"], "vif": ["Q12*", "D61E", "R67T", "H73Q", "L91K", "D117E", "R132S", "E134D", "R167K"], "vpu": ["L2P", "P3T", "V13I", "Y30I", "L33I", "E44R", "E60D", "L61T", "S62E", "K63E", "V65A", "E66K", "M67L", "G68-", "-69V", "-70E", "-71M", "-72G", "-73N", "-74H", "-75D", "-76L", "-77G", "-79A", "N80Y"]}, "labels": {"aa": "INT: M50I, V88L, T97A, V112T, I135V, F139Y, H183R, T218I, I234L, D256E, A282V; RT-p51: T11K, A114T, S123G, E138A, E177D, D250E, A272P, V293I, T294P, P321S, A360T, K388R, E396D, E413D, V435I; RT-p66: T11K, A114T, S123G, E138A, E177D, D250E, A272P, V293I, T294P, P321S, A360T, K388R, E396D, E413D, V435I, A446S, T477A, I495V, K512R, D514E; gp120: S1K; gp41: I4L, L9F, V69I, L76P, N109S, Q129T, N133K, N140T, K144I, Q147K, D163E, V178I, G215D, D232H, S251N, F263L, I264V, I266L, T270A, L277N, G278S, I298L, L304V, V318I, L340F; nef: I20M, H40Y, S45T, A56T, Y81H, K82Q, L85M, Y120F, I168M, M173V, W183R, K184Q, R188L, K192R, I194L, E201D; p17: M61I, K69N, A83V, N109K, A119T, D121E; p24: H12Y, S14A, T48A, G225S; p6: I14L, E19G, I21M, -26Q, K27E, V36A; p7: R3K, N5S, G8S, K10R, R11K, K41R, E42G; pro: K14R, G16E, Q18R, P39S, K45R, I62V, V77I; rev: E10A, L13R, R14T, R50T, T62A, H82S, D84A, D88G, G96Q, V97P, I109L, N116T; tat: N7S, N12K, Y32F, V36S, F38V, Q60H, V80I; vif: Q12*, D61E, R67T, H73Q, L91K, D117E, R132S, E134D, R167K; vpu: L2P, P3T, V13I, Y30I, L33I, E44R, E60D, L61T, S62E, K63E, V65A, E66K, M67L, G68-, -69V, -70E, -71M, -72G, -73N, -74H, -75D, -76L, -77G, -79A, N80Y"}}}, {"name": "MN791209", "node_attrs": {"div": 0.15554, "accession": "MN791209", "clade_membership": {"value": "A1"}, "country": {"value": "UG"}, "date": {"value": 2011.0}, "Strain_name": {"value": "10220v04_01"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "T362A", "G365A", "A399C", "A419G", "T434C", "A461C", "A497C", "A499T", "A516T", "G524A", "G542A", "C558A", "A563G", "T571A", "G607A", "T614G", "A678T", "G709A", "A735G", "G771T", "T788C", "G791A", "A815G", "A836G", "A839G", "C851T", "T858C", "A869G", "C897T", "T936C", "T978G", "T983C", "A986G", "T1001C", "T1037C", "A1046G", "T1052C", "C1091T", "C1136T", "C1178T", "T1229C", "G1232A", "C1243T", "T1253A", "T1262A", "A1263T", "G1278A", "G1279A", "T1296C", "T1310C", "A1319T", "T1334C", "G1339A", "A1343G", "T1350C", "A1352G", "T1421C", "A1452C", "C1453A", "A1454G", "-1455G", "-1456T", "-1457G", "C1490T", "A1568G", "T1574C", "G1657A", "A1673G", "G1777A", "-1786A", "C1787A", "A1790C", "G1794A", "C1825T", "A1857G", "G1963A", "A1968G", "T1987C", "T2011C", "A2023G", "A2026G", "T2035C", "T2095C", "G2113A", "G2173A", "C2211G", "A2222G", "G2224C", "T2236C", "A2305G", "T2323C", "A2377C", "G2389A", "C2434T", "G2463A", "A2498G", "G2530A", "T2542A", "A2563G", "A2579T", "G2612T", "T2654C", "A2665G", "A2713G", "A2722G", "A2734G", "C2818A", "C2845T", "G2878A", "G2951A", "A2969G", "A3124G", "A3136G", "C3140T", "G3200A", "G3211A", "A3217G", "A3224C", "G3226A", "T3253A", "A3277G", "C3307T", "G3316A", "T3399A", "G3448A", "T3472G", "A3478G", "G3616A", "A3637T", "G3718A", "T3730C", "T3742C", "C3754T", "T3779C", "T3799C", "T3820C", "G3836A", "T3850C", "A3890T", "A3937G", "C3940T", "G3952A", "C4015T", "T4039G", "C4042T", "A4048T", "G4063A", "G4131C", "C4132T", "A4174G", "A4175G", "A4176G", "G4195A", "A4293G", "A4399G", "A4423T", "A4498C", "A4552G", "A4646G", "A4662-", "G4677A", "T4697G", "T4702G", "C4724T", "A4725C", "G4726C", "G4737A", "T4738C", "A4826C", "A4861G", "A4874C", "G4881A", "A4882G", "C4890T", "C4902T", "A4923G", "C4955T", "A4980G", "A5005C", "C5034T", "T5062G", "A5085C", "A5113G", "C5116A", "C5134A", "C5149T", "C5168T", "G5179A", "A5191G", "T5197C", "G5212A", "C5221A", "T5224A", "T5245C", "T5260C", "G5267A", "A5268G", "A5302G", "G5312A", "A5336G", "A5355T", "G5362C", "C5372T", "T5424C", "A5431C", "A5433G", "A5446T", "A5447C", "G5482C", "T5483A", "T5484A", "A5548T", "G5561A", "A5575G", "C5584T", "G5599T", "T5600-", "A5601-", "T5602-", "C5612T", "G5620C", "A5640C", "C5641T", "C5651T", "C5653G", "T5654G", "A5711G", "A5720G", "A5734C", "G5737C", "G5791T", "G5794A", "A5802G", "A5805G", "-5809G", "-5810G", "-5811G", "C5826T", "A5831G", "T5832C", "A5848G", "G5864-", "A5865-", "A5866-", "A5946G", "T5956C", "G5972A", "T5980C", "T5992C", "T5998C", "A6013T", "A6065G", "A6066C", "C6109T", "T6151C", "-6167A", "A6168G", "G6170A", "-6178T", "-6180C", "C6189T", "-6195C", "-6196C", "-6198G", "-6201A", "C6202T", "-6203G", "-6204C", "-6205C", "-6206A", "-6207C", "-6208T", "-6209A", "-6210T", "-6211C", "-6213C", "-6214C", "-6215A", "-6216A", "-6217T", "-6218G", "-6219A", "-6220A", "C6247T", "A6275C", "C6278A", "A6279G", "T6289C", "T6322G", "G6323A", "A6327G", "T6395A", "C6427T", "C6482G", "C6483A", "G6547A", "A6599C", "A6623C", "T6634A", "C6637T", "C6641T", "A6648T", "C6670T", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "A6695G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "C6717T", "A6728G", "G6732A", "G6743A", "T6745C", "G6779A", "A6781C", "A6786C", "A6789G", "A6801G", "A6810G", "A6811T", "C6812A", "A6817G", "A6821G", "C6822A", "A6847C", "T6849C", "C6850A", "C6855A", "A6858G", "C6875A", "-6956C", "-6957C", "-6958T", "A6959G", "T6961C", "C6964-", "A6965-", "A6971-", "C6973-", "A6974-", "A6978-", "A6989T", "G6990A", "G6994A", "-6998T", "-6999C", "G7026A", "A7027G", "G7054A", "G7058A", "A7066G", "A7096C", "C7124T", "G7147T", "A7148G", "A7149G", "T7150G", "A7151G", "A7152G", "T7153A", "T7159C", "T7165A", "G7269A", "T7309G", "T7325C", "G7343A", "A7373C", "C7463A", "A7470G", "G7477A", "A7553C", "C7597T", "G7657A", "C7658G", "A7668G", "G7717A", "A7732G", "C7747T", "A7772G", "A7773G", "G7777A", 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"K24S", "Q35P", "V36Q", "T58S", "S62N", "N67D", "P70S", "I74T", "P75S", "Q78K", "G79W", "V80D", "P84Q", "S87P"], "vif": ["K26-"], "vpr": ["H40Q", "E55R", "V70I", "Q77R", "I84Y", "S86T"], "vpu": ["L2F", "E5Q", "A15V", "L16G", "K35R", "K38R", "I43L", "E44Q", "-69N", "-70Y", "-71G", "-72L", "-73G", "-79D", "N81D"]}, "labels": {"aa": "INT: A21T, S39C, S119T, N134G, K173R, I208M, Q216H; RT-p51: K39R, K43D, S123N, I135V, S162C, A173S, A286T, I292V, A369T, M377L, V435E; RT-p66: K39R, K43D, S123N, I135V, S162C, A173S, A286T, I292V, A369T, M377L, V435E; gp120: E4N, K31R, V40I, E64K, N71A, -105S, -106I, -107P, -109A, -111I, -113N, -114E, -115M, -116E, -117G, K141Q, Q142R, V153I, I156M, N157S, N158G, S181T, E204K, P210E, K241E, I249L, I257L, P263S, S278G, A288V, T292A, G293D, D297N, T308A, E309N, N311T, K312R, K316R, N319S, Q320K, E326K, I332T, N335S, L341I, -368P, N369D, N370S, S373-, -379Y, P389Q, R391K, N432G, N433G, T436N, N437T; gp41: F8L, A14T, I24L, L54M, K56R, I84L, Q119E, K122R, N157G, K166R, T210L, P213Q, R214V, R221G, I222T, D230G, D232G, C253F, R259H, A268V, E272G, L277R, G281S, Y284I, G286K, I290T, R294Q, I298N, N302S, G322L, R324G, I325F, C326G, I329V, L330I, L340A; nef: I10L, E15Q, Q22R, A26R, G29R, G31E, L37N, D38-, V43A, T44I, I48V, -53G, -54A, C55-, W57L, L58M, A60E, E64D, L85V, E108D, H116N, T133I, T157N, S163C, C169S, R182Q, R188Y, F191Y, I194M, L198K, F202Y; p1: S9N; p17: V7I, S9R, E42D, E55V, M61L, L75I, F79Y, R91Q, D93E, K112R, T115S, S125N; p2: T8Q, N9Q, -10Q, -11V, -12N; p24: I2V, L83V, T171V, T178S, E180D, G183N, E187D, R203K, S207P; p6: R33K, V36E, V39I, P49L; pro: K20R, K57R, A63P; rev: E11D, V16I, Y28P, K32S, S34T, K39R, P67S, A68Q, I78L, D88N, G96R, R99E, V102D, G104E, D108N, K115E, N116K; tat: T19P, N23S, K24S, Q35P, V36Q, T58S, S62N, N67D, P70S, I74T, P75S, Q78K, G79W, V80D, P84Q, S87P; vif: K26-; vpr: H40Q, E55R, V70I, Q77R, I84Y, S86T; vpu: L2F, E5Q, A15V, L16G, K35R, K38R, I43L, E44Q, -69N, -70Y, -71G, -72L, -73G, -79D, N81D"}}}]}]}, {"name": "A1_NODE_0000014", "node_attrs": {"div": 0.0948, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A480G", "G495A", "G771A", "C772A", "G791A", "A1074T", "G1077C", "G1078A", "C1187T", "C1295A", "G1298A", "G1339A", "A1499G", "A1592G", "A1673G", "T2095C", "G2215A", "G2273A", "C2356T", "T2392C", "T2393C", "C2615A", "A2743C", "A2809G", "G3019A", "T3433C", "G3877A", "G4264A", "G4294A", "G4696A", "C5237T", "C5303T", "T5457C", "T5851C", "C6109T", "-6178T", "C6181T", "-6199T", "-6209A", "A6327G", "C6807T", "-6830G", "-6835C", "A6836-", "A6837-", "C6838-", "-6966A", "-6972G", "-6977C", "-6982G", "A7998G", "T8167C", "G8240A", "G8255A", "G8870T"], "RT-p51": ["V60I", "Q174K"], "RT-p66": ["V60I", "Q174K"], "gp120": ["-113N", "-119T", "K150R", "N157D", "N158S", "A318V", "K329-"], "gp41": ["D232G", "G313N", "V318I"], "p17": ["S49G"], "p24": ["S14N", "I115L", "G116Q", "G120S", "T171A", "R203K"], "rev": ["A68T", "S107P"], "vpr": ["H45Y"], "vpu": ["V65I"]}, "labels": {"aa": "RT-p51: V60I, Q174K; RT-p66: V60I, Q174K; gp120: -113N, -119T, K150R, N157D, N158S, A318V, K329-; gp41: D232G, G313N, V318I; p17: S49G; p24: S14N, I115L, G116Q, G120S, T171A, R203K; rev: A68T, S107P; vpr: H45Y; vpu: V65I"}}, "children": [{"name": "AF457086", "node_attrs": {"div": 0.13544, "accession": "AF457086", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2000.0}, "Strain_name": {"value": "MSA4079"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T372C", "A412G", "G413A", "C426A", "A431G", "G452A", "C531A", "T571A", "A585G", "C586T", "A592T", "A599T", "G608A", "G667A", "C679A", "A699G", "A706G", "G712A", "C713-", "A714-", "A715-", "G785A", "A818G", "G821A", "A840G", "C851T", "G956A", "G1089A", "C1118T", "C1137T", "A1151G", "A1192G", "C1247T", "C1403T", "G1404A", "T1427C", "A1442G", "T1451G", "A1452C", "G1472A", "G1486A", "G1487A", "G1498A", "C1536T", "G1586A", "G1619A", "C1693T", "A1694G", "G1777A", "-1786T", 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"C7940A", "G7943C", "G7947A", "T7948A", "C7960T", "C8038T", "C8047T", "G8050A", "A8080C", "T8182A", "T8196C", "A8204G", "A8208G", "C8213A", "G8231A", "C8232G", "G8241A", "A8263G", "A8264T", "A8271T", "A8276T", "C8311T", "G8348T", "G8385A", "G8393A", "A8403G", "G8404A", "C8406A", "A8424C", "A8425C", "T8444C", "C8471T", "C8477T", "C8480T", "A8484-", "T8485-", "A8486-", "-8490G", "-8491T", "-8492G", "T8495C", "G8508A", "G8555A", "C8568G", "A8573G", "G8588A", "G8590C", "T8595G", "G8597A", "T8600C", "T8636A", "A8643G", "A8666T", "C8688A", "A8794C", "A8805G", "C8832T", "T8855C", "A8859G", "G8888A", "C8906G", "A8915C", "T8923C", "C8928A", "G8929A", "A8930G", "C9039T", "T9051A", "T9097G", "-9108C", "C9129T", "A9131G", "G9132A"], "INT": ["E11D", "L63I", "T97S", "I135V", "I234L"], "RT-p51": ["P4T", "K32Q", "I142V", "I179V", "Q245V", "K275Q", "K277R", "D335G", "K350R", "A369T", "V376A", "T386I", "K390R", "V435I"], "RT-p66": ["P4T", "K32Q", "I142V", "I179V", "Q245V", "K275Q", "K277R", "D335G", "K350R", "A369T", "V376A", "T386I", "K390R", "V435I", "A446S", "K512R", "N519S", "Q520K", "K524E", "G527R", "K550R"], "gp120": ["A2T", "E4D", "D34E", "V37K", "N57H", "L58M", "E64Q", "N102E", "S104G", "-105N", "-106V", "-107T", "N108L", "-109D", "-111K", "-114I", "-115T", "-116N", "-117A", "-118T", "-120K", "-121Y", "-122L", "-123K", "-124E", "K127T", "F131Y", "M133V", "L137I", "K140R", "K141T", "Q155P", "N159G", "I173V", "S181T", "P210I", "E240G", "V242I", "M243K", "L260F", "P263S", "H280R", "D294A", "T308K", "K312T", "K316R", "E323T", "H324Y", "E326G", "-328R", "I332R", "N334A", "N335A", "L341I", "I343V", "S360T", "G361K", "-368S", "N369H", "T371D", "-374T", "-375Q", "-376E", "-377S", "-379S", "-381K", "-382S", "V414I", "V418E", "N433S", "N434T", "T436E", "N437T", "E438-", "T439-", "K457Q", "E481A"], "gp41": ["V69I", "K77R", "S107T", "Q108L", "N109S", "Q119E", "E137Q", "K172R", "P213T", "G215E", "I290L", "I298T", "I301V", "N302S", "L304I", "A310R", "I321L", "Q323L", "I325F", "L340F"], "nef": ["E15K", "R21E", "Q22R", "E28P", "I48V", "A56T", "L76V", "G83A", "L85V", "D98E", "I101V", "E108D", "H116N", "E151A", "K155E", "M173V", "E176D", "R194T", "R196K"], "p17": ["K26R", "L31M", "A54T", "P66T", "F79Y", "T84V", "Y86F", "S111N", "T115K", "T122A", "N124S", "S126K", "K127-"], "p2": ["T8Q", "N9Q", "-10P", "-11N"], "p24": ["I37V", "K154R", "G225S"], "p6": ["P5L", "R33K"], "p7": ["R7K", "R11K"], "pro": ["K45R"], "rev": ["D7N", "R14T", "P31H", "K32T", "S34T", "R38W", "P67S", "I78L", "S112T"], "tat": ["N23S", "R53K", "R57G", "Q60H", "N67D", "P68S", "Q78H", "V80N", "P84L"], "vif": ["V31I", "G37D", "E45D", "S46C", "R47K", "V66I", "R67K", "T74P", "R90K", "R132S", "I159P", "K160R", "T170A"], "vpr": ["H28N", "N48Q", "I63T", "I84S", "G94S"], "vpu": ["P3S", "L4T", "E5L", "C7W", "V13I", "L33I", "G68D", "-69Y", "-70D", "-71L", "-72G", "-79N"]}, "labels": {"aa": "INT: E11D, L63I, T97S, I135V, I234L; RT-p51: P4T, K32Q, I142V, I179V, Q245V, K275Q, K277R, D335G, K350R, A369T, V376A, T386I, K390R, V435I; RT-p66: P4T, K32Q, I142V, I179V, Q245V, K275Q, K277R, D335G, K350R, A369T, V376A, T386I, K390R, V435I, A446S, K512R, N519S, Q520K, K524E, G527R, K550R; gp120: A2T, E4D, D34E, V37K, N57H, L58M, E64Q, N102E, S104G, -105N, -106V, -107T, N108L, -109D, -111K, -114I, -115T, -116N, -117A, -118T, -120K, -121Y, -122L, -123K, -124E, K127T, F131Y, M133V, L137I, K140R, K141T, Q155P, N159G, I173V, S181T, P210I, E240G, V242I, M243K, L260F, P263S, H280R, D294A, T308K, K312T, K316R, E323T, H324Y, E326G, -328R, I332R, N334A, N335A, L341I, I343V, S360T, G361K, -368S, N369H, T371D, -374T, -375Q, -376E, -377S, -379S, -381K, -382S, V414I, V418E, N433S, N434T, T436E, N437T, E438-, T439-, K457Q, E481A; gp41: V69I, K77R, S107T, Q108L, N109S, Q119E, E137Q, K172R, P213T, G215E, I290L, I298T, I301V, N302S, L304I, A310R, I321L, Q323L, I325F, L340F; nef: E15K, R21E, Q22R, E28P, I48V, A56T, L76V, G83A, L85V, D98E, I101V, E108D, H116N, E151A, K155E, M173V, E176D, R194T, R196K; p17: K26R, L31M, A54T, P66T, F79Y, T84V, Y86F, S111N, T115K, T122A, N124S, S126K, K127-; p2: T8Q, N9Q, -10P, -11N; p24: I37V, K154R, G225S; p6: P5L, R33K; p7: R7K, R11K; pro: K45R; rev: D7N, R14T, P31H, K32T, S34T, R38W, P67S, I78L, S112T; tat: N23S, R53K, R57G, Q60H, N67D, P68S, Q78H, V80N, P84L; vif: V31I, G37D, E45D, S46C, R47K, V66I, R67K, T74P, R90K, R132S, I159P, K160R, T170A; vpr: H28N, N48Q, I63T, I84S, G94S; vpu: P3S, L4T, E5L, C7W, V13I, L33I, G68D, -69Y, -70D, -71L, -72G, -79N"}}}, {"name": "A1_NODE_0000015", "node_attrs": {"div": 0.09820999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A776G", "C1514T", "T1957C", "G2113A", "C2149T", "A2482G", "A2693G", "T2770G", "C2845A", "T3049C", "C4820T", "C5056A", "T5781A", "-5824A", "G6046T", "-6210T", "-6211G", "A6276G", "C6427T", "A6809G", "-6962G", "-6968G", "-6970C", "A6996-", "G6997-", "A8104C", "T8171A", "T8321C", "C8751T"], "RT-p51": ["T200A", "D250E"], "RT-p66": ["T200A", "D250E"], "gp120": ["T110N", "K141R", "N261T", "N383-", "V402A"], "nef": ["P25A"], "rev": ["S86H", "V108D"], "vif": ["T157K"], "vpu": ["S62A"]}, "labels": {"aa": "RT-p51: T200A, D250E; RT-p66: T200A, D250E; gp120: T110N, K141R, N261T, N383-, V402A; nef: P25A; rev: S86H, V108D; vif: T157K; vpu: S62A"}}, "children": [{"name": "A1_NODE_0000016", "node_attrs": {"div": 0.10543999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A461C", "C679A", "A815G", "C1103T", "G1424A", "G1493A", "G1657A", "C1986A", "C2335T", "A2422G", "T2494C", "C2828A", "C2930T", "A2938G", "C2944T", "T3112C", "G3385A", "G3508A", "A3775G", "G3796A", "T3844C", "G4228A", "C4412T", "G4631A", "T4717A", "T4982G", "T5062G", "C5221T", "G5556A", "A5557G", "T5611C", "T5670G", "C5727T", "G5739A", "G5839A", "T5911C", "C5923T", "T5924C", "A6179G", "C6187T", "-6195A", "-6205C", "-6213A", "-6214A", "-6217G", "G6336A", "C6487T", "A6623C", "A6765C", "G6771A", "A6821G", "A6907G", "-6963G", "-6975A", "-6999C", "A7089C", "G7101A", "A7573G", "T7702C", "A7773G", "T7870A", "G8050A", "G8105A", "G8234A", "T8235C", "G8268T", "A8276T", "T8582C", "A8666G", "C8688A", "T8870A"], "INT": ["D286N"], "gp120": ["E74D", "I257L", "N304T", "S306N", "N319D", "N370S", "N378-", "T380-", "Q412P"], "gp41": ["Q129E", "N157S", "V311T", "I321L", "G322V", "I325F"], "nef": ["H116N"], "p1": ["S9N"], "p17": ["E42D"], "pro": ["L63H"], "rev": ["R14K"], "tat": ["S61G"], "vif": ["F44Y", "T155K", "I159R"], "vpu": ["-69N", "-70Y"]}, "labels": {"aa": "INT: D286N; gp120: E74D, I257L, N304T, S306N, N319D, N370S, N378-, T380-, Q412P; gp41: Q129E, N157S, V311T, I321L, G322V, I325F; nef: H116N; p1: S9N; p17: E42D; pro: L63H; rev: R14K; tat: S61G; vif: F44Y, T155K, I159R; vpu: -69N, -70Y"}}, "children": [{"name": "KX907423", "node_attrs": {"div": 0.14708, "accession": "KX907423", "clade_membership": {"value": "A1"}, "country": {"value": "TZ"}, "date": {"value": 2006.0}, "Strain_name": {"value": "CO6830V7"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "G424A", "C426T", "C435A", "C467T", "T473C", "G480A", "A495C", "A530G", "C558A", "A599C", "A611T", "A678G", "C707T", "G709A", "C823G", "C845T", "A869G", "T892C", "G893A", "T926A", "A932G", "G987C", "T988C", "T1001C", "G1019A", "A1079G", "C1091T", "A1142G", "T1182C", "C1247T", "A1359T", "G1418A", "T1502G", "-1503A", "-1504T", "-1505T", "G1673A", "G1697A", "A1742G", "G1766A", "A1774C", "-1786T", "A1870G", "A2002G", "C2047T", "C2211T", "A2212G", "A2215G", "G2248A", "A2273G", "C2296T", "A2329G", "T2356C", "A2395G", "A2398G", "T2449C", "G2524A", "C2589T", "C2596T", "G2602A", "A2611G", "A2614G", "A2626G", "A2641G", "T2672C", "T2737A", "G2770A", "T2776C", "G2833A", "A2842G", "T2854A", "G2878A", "G2909A", "A2925G", "T2935C", "G3010A", "C3031A", "G3127A", "G3162A", "A3165G", "G3211A", "C3266T", "G3324A", "G3325T", "G3409A", "G3431T", "C3550A", "T3559C", "C3620A", "A3621T", "C3628T", "G3643A", "C3649T", "G3667A", "T3695G", "A3748G", "T3778C", "G3836A", "G3896A", "G3955A", "T3962C", "G3989A", "T3994A", "T4039A", "G4060A", "T4075C", "C4076A", "G4078A", "A4093C", "T4135C", "C4144T", "G4186A", "T4191A", "T4234A", "G4276T", "C4288T", "C4381T", "A4475G", "G4549A", "T4640C", "C4652T", "T4670C", "A4696G", "T4706C", "C4724T", "G4727A", "G4737A", "G4786A", "C4800T", "G4870A", "G4892A", "A4895T", "T4910C", "T4912A", "C4914T", "T4928C", "T4973C", "A4974T", "G5036A", "C5050A", "A5055G", "T5162C", "G5179T", "T5182C", "T5188G", "T5245C", "G5257A", "T5303A", "A5305G", "G5361A", "A5366G", "T5415C", "G5444A", "G5448C", "C5454T", "G5463A", "G5482A", "T5483G", "C5585A", "C5612A", "T5613G", "G5620A", "A5621C", "A5622T", "A5652G", "C5658T", "A5677G", "T5688C", "A5734C", "C5792A", "T5801C", "G5803A", "A5804C", "A5806C", "G5808T", "-5812A", "-5813T", "-5814T", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5840T", "C5887T", "G5902A", "G5915A", "C5998T", "A6019G", "A6030T", "G6076T", "A6086G", "C6087A", "T6100C", "A6113T", "G6114C", "T6134C", "C6145T", "T6155C", "A6157G", "C6166T", "-6167G", "-6175G", "-6180A", "A6182G", "C6183G", "C6189A", "A6191C", "T6193G", "-6196T", "-6198T", "-6201G", "C6202T", "-6203G", "-6204T", "-6206T", "-6207C", "-6208C", "T6210C", "A6212G", "-6215A", "-6216T", "A6221C", "C6263T", "A6281C", "T6287C", "A6304G", "A6318C", "G6323A", "A6329G", "G6333A", "A6339G", "T6340C", "C6364A", "G6442A", "T6457A", "T6460G", "A6461G", "G6463A", "G6464A", "G6466T", "A6471C", "T6472A", "C6477A", "C6483A", "G6547A", "A6565G", "G6572A", "A6580G", "C6601T", "C6613T", "A6636C", "G6638A", "A6647G", "-6689A", "G6693A", "G6725A", "C6729G", "A6730T", "T6733C", "C6758T", "A6759T", "G6779C", "T6787C", "A6789G", "A6790C", "C6797A", "A6800G", "A6811T", "C6824G", "A6833-", "C6835G", "-6836A", "-6837A", "-6838C", "A6839G", "A6840C", "G6871A", "G6905A", "C6951T", "-6956G", "-6957T", "-6958T", "T6961G", "A6965C", "-6967G", "-6969A", "C6970A", "-6976T", "A6992-", "C6993-", "G6995-", "-6998G", "A7013G", "C7014T", "T7015A", "A7093G", "T7095A", "A7123G", "T7153C", "A7154G", "A7155G", "C7156G", "A7158T", "T7159A", "A7162T", "A7163-", "C7164-", "T7165-", "G7440A", "G7459A", "A7470G", "A7500G", "T7537C", "C7587T", "A7589G", "A7590C", "T7622A", "G7627A", "T7656A", "C7658G", "A7660C", "T7666A", "C7678T", "A7701G", "A7722T", "G7765A", "C7801A", "G7807A", "T7813C", "A7819G", "G7831A", "C7874T", "G7918A", "C7926T", "G7943A", "A7992G", "A8069T", "C8106A", "G8134C", "A8143G", "T8159A", "A8171G", "T8172C", "A8191G", "A8222T", "G8241A", "A8255T", "A8264T", "G8274C", "T8302C", "C8320T", "C8321G", "T8322C", "C8323A", "G8330C", "C8331T", "T8334G", "G8349A", "A8370T", "T8390C", "A8399G", "A8402G", "A8409G", "C8415G", "A8424G", "C8460T", "T8505C", "G8506A", "C8507A", "C8509T", "A8519T", "G8590A", "T8595G", "G8597A", "A8663G", "A8701T", "C8702T", "G8738A", "C8740T", "A8746T", "T8770A", "T8789G", "T8795A", "C8812A", "A8834G", "A8846G", "G8873A", "T8923G", "C8927T", "C8934A", "G8982A"], "INT": ["A21T", "D41N", "M60I", "V72I", "L101I", "F139Y", "E167D", "I234V"], "RT-p51": ["T39M", "I60V", "T165I", "F214L", "Q245K", "A272T", "K277R", "D312E", "R356K", "K357R", "W410Y"], "RT-p66": ["T39M", "I60V", "T165I", "F214L", "Q245K", "A272T", "K277R", "D312E", "R356K", "K357R", "W410Y", "A446S", "Q509I", "S534A"], "gp120": ["E21K", "E59V", "E64D", "T78E", "-105D", "-106V", "-107K", "-109D", "N110G", "-111N", "T112N", "N113Q", "-114N", "-115I", "-116S", "-117V", "-118S", "-120E", "-121M", "-122Q", "-124G", "K143Q", "Y145H", "Q155P", "D157N", "N159D", "S161N", "N201K", "D202E", "K203E", "E204N", "N206T", "T208K", "P210Q", "E240K", "E262K", "I265E", "V279I", "A291T", "T292S", "D294I", "H302F", "E309Q", "K312S", "Q315K", "K316E", "E323A", "H324D", "-328A", "N334T", "G351R", "T366I", "-368V", "T371A", "-372N", "S373-", "T387V", "V414E", "R416K", "N433-", "N435G", "T436I"], "gp41": ["R46K", "K56R", "Q66R", "T95I", "N96A", "S107T", "L118Q", "Q119D", "D121E", "N133S", "N140I", "N166K", "M176I", "L191F", "T208I", "D230G", "S256C", "A268K", "W286R", "I290A", "I307L", "I318F", "R324T", "L340A", "A343L", "L344W"], "nef": ["G3S", "I10L", "I20M", "Q22R", "T23A", "H40Y", "-53Q", "-54V", "C55-", "A56-", "E59D", "G83E", "L85V", "Y120F", "T133I", "Y135F", "F143Y", "D149E", "T157N", "I168M", "I182M", "F191L", "L198M"], "p17": ["K18R", "R30K", "L34I", "G49S", "A54P", "L75I", "T115E", "S125N"], "p24": ["A31G", "M54T", "V86P", "M96I", "S120G", "T210S"], "p6": ["I21M", "D32A"], "p7": ["I12M", "-13I"], "rev": ["Q24K", "Q74L", "H86Q", "G96Q", "R99G", "V104E", "D108G", "K115E"], "tat": ["K24N", "V36S", "P70Q", "P73S"], "vif": ["V51I", "R67K", "S95N", "L109Q", "H110Y", "S130C", "K157E"], "vpr": ["E25D", "H28Q", "L67M", "G86R"], "vpu": ["L2Q", "E5T", "T24A", "I43L", "D58E", "D78-", "N80D", "N81L"]}, "labels": {"aa": "INT: A21T, D41N, M60I, V72I, L101I, F139Y, E167D, I234V; RT-p51: T39M, I60V, T165I, F214L, Q245K, A272T, K277R, D312E, R356K, K357R, W410Y; RT-p66: T39M, I60V, T165I, F214L, Q245K, A272T, K277R, D312E, R356K, K357R, W410Y, A446S, Q509I, S534A; gp120: E21K, E59V, E64D, T78E, -105D, -106V, -107K, -109D, N110G, -111N, T112N, N113Q, -114N, -115I, -116S, -117V, -118S, -120E, -121M, -122Q, -124G, K143Q, Y145H, Q155P, D157N, N159D, S161N, N201K, D202E, K203E, E204N, N206T, T208K, P210Q, E240K, E262K, I265E, V279I, A291T, T292S, D294I, H302F, E309Q, K312S, Q315K, K316E, E323A, H324D, -328A, N334T, G351R, T366I, -368V, T371A, -372N, S373-, T387V, V414E, R416K, N433-, N435G, T436I; gp41: R46K, K56R, Q66R, T95I, N96A, S107T, L118Q, Q119D, D121E, N133S, N140I, N166K, M176I, L191F, T208I, D230G, S256C, A268K, W286R, I290A, I307L, I318F, R324T, L340A, A343L, L344W; nef: G3S, I10L, I20M, Q22R, T23A, H40Y, -53Q, -54V, C55-, A56-, E59D, G83E, L85V, Y120F, T133I, Y135F, F143Y, D149E, T157N, I168M, I182M, F191L, L198M; p17: K18R, R30K, L34I, G49S, A54P, L75I, T115E, S125N; p24: A31G, M54T, V86P, M96I, S120G, T210S; p6: I21M, D32A; p7: I12M, -13I; rev: Q24K, Q74L, H86Q, G96Q, R99G, V104E, D108G, K115E; tat: K24N, V36S, P70Q, P73S; vif: V51I, R67K, S95N, L109Q, H110Y, S130C, K157E; vpr: E25D, H28Q, L67M, G86R; vpu: L2Q, E5T, T24A, I43L, D58E, D78-, N80D, N81L"}}}, {"name": "KX907348", "node_attrs": {"div": 0.14479999999999998, "accession": "KX907348", "clade_membership": {"value": "A1"}, "country": {"value": "TZ"}, "date": {"value": 2003.0}, "Strain_name": {"value": "CO0543V2"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "A359G", "G365A", "A369C", "G428A", "A509G", "G518A", "G534T", "C537A", "A562G", "C583T", "C606A", "A632G", "A653G", "G671A", "A678C", "T734G", "A735G", "C773T", "G785A", "G803A", "C827T", "C872T", "G908A", "C917T", "T944C", "T978A", "A980G", "A995G", "C1005G", "A1028G", "G1089A", "C1115A", "A1124G", "A1151G", "T1166C", "A1205G", "A1250G", "A1265C", "C1403T", "A1442G", "T1451G", "A1494C", "G1592A", "A1660G", "G1661T", "G1687A", "C1693T", "A1719C", "G1731A", "A1736G", "G1773A", "-1786G", "A1790T", "T1792C", "C1826G", "G1845A", "T1910C", "G1942A", "A1951G", "G1963A", "A1969G", "A2059G", "G2156A", "G2224A", "C2263T", "G2311A", "C2392T", "T2440C", "G2459A", "C2503T", "A2579C", "G2580A", "C2644T", "G2704A", "G2710A", "T2723C", "A2773G", "T2779A", "A2829T", "G2830A", "A2839C", "C2953T", "C2960T", "A2975C", "A3043G", "A3046G", "A3124G", "A3192G", "G3200A", "G3221A", "T3222C", "A3224C", "A3258G", "A3280G", "G3398A", "G3448A", "G3463A", "G3467A", "T3542C", "G3595A", "G3664A", "A3685G", "G3718A", "A3739G", "T3754C", "C3763T", "A3768G", "G3859A", "A3877G", "A3988G", "T4039C", "A4057G", "A4064G", "A4090G", "C4129A", "A4178G", "A4183G", "T4216C", "T4234G", "C4258T", "A4423G", "T4471C", "A4625G", "A4650C", "T4655C", "T4674C", "T4691A", "G4695A", "A4735G", "A4745G", "G4766A", "T4769G", "T4799C", "A4815C", "A4865G", "T4868C", "C4889T", "C4890T", "C4937A", "C4939T", "A4951G", "C5006T", "T5018C", "A5049G", "C5050G", "C5052T", "G5059A", "C5102T", "G5128A", "G5131A", "C5134A", "G5143A", "C5160T", "A5161G", "G5185A", "A5198C", "C5248T", "A5268C", "T5293C", "A5345G", "G5359A", "G5444C", "G5448A", "A5461G", "A5462T", "A5545G", "A5587G", "C5612T", "A5631T", "C5641T", "G5644A", "A5702G", "G5712A", "G5729A", "G5737C", "G5741A", "A5781C", "C5789T", "A5790G", "A5795C", "G5800A", "A5802T", "-5809G", "-5810G", "-5811G", "C5826T", "T5834C", "G5856A", "G5861-", "C5862-", "A5863-", "C5869T", "T5881C", "A5907G", "G5912A", "G5954A", "T5956G", "A5957G", "T5964C", "A5983G", "A6023T", "G6029A", "G6044A", "G6055A", "G6076C", "T6109C", "G6133A", "T6148C", "-6167A", "T6169C", "G6170T", "T6171-", "C6172-", "A6173-", "-6175T", "-6180G", "T6181C", "A6188G", "C6189G", "A6194C", "-6196G", "-6198A", "-6201T", "-6203A", "-6204C", "-6208A", "-6215T", "-6216G", "-6218T", "-6219A", "-6220G", "A6221-", "A6222-", "A6223-", "G6224-", "T6246A", "G6253A", "A6261T", "G6267A", "A6275G", "G6276T", "A6326G", "G6327A", "T6328C", "G6392A", "T6436C", "G6451A", "G6490T", "A6525G", "C6545T", "A6575G", "A6576G", "G6577T", "C6637G", "A6648T", "A6686-", "G6687-", "T6688-", "T6690-", "A6691-", "C6692G", "A6695G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701C", "-6702T", "A6714G", "T6735A", "G6743A", "T6766A", "A6780C", "A6788G", "A6789C", "T6794C", "A6801C", "A6811C", "C6812A", "C6822A", "-6831G", "-6832G", "A6854G", "C6855A", "C6859A", "T6860C", "T6863A", "A6889G", "C6937T", "-6956T", "A6959-", "-6967T", "-6969G", "-6976G", "A6978T", "-6979G", "-6980G", "-6981A", "-6994G", "-6996G", "-6997G", "-6998T", "A7001G", "T7003C", "C7008A", "C7020A", "A7021C", "C7024T", "G7054A", "G7102C", "G7106C", "A7148G", "T7150C", "A7158G", "A7161C", "C7164A", "C7250T", "G7291A", "A7313C", "A7315G", "G7319A", "C7324T", "T7325C", "C7328T", "A7373G", "C7397A", "A7399G", "T7403C", "G7405A", "G7477A", "G7513A", "A7533G", "G7534A", "C7624T", "A7628G", "G7640A", "C7642G", "G7677A", "A7722C", "C7723T", "G7726A", "A7734G", "G7735A", "A7744T", "A7818G", "G7868A", "A7938G", "G7947A", "G7961A", "A8014G", "C8071A", "T8094C", "C8146A", "T8182A", "T8196G", "C8213T", "G8254T", "A8264C", "C8294A", "A8308G", "C8336T", "G8354A", "G8407A", "T8414G", "C8416T", "A8425C", "G8436C", "T8504C", "A8531C", "A8584T", "C8609T", "A8643G", "G8678A", "C8699T", "G8744A", "T8751A", "G8804A", "T8813G", "T8835C", "G8888A", "C8903T", "G8905A", "C8906T", "A8915T", "A8918G", "T8923A", "G8929T", "T8947A", "A8954G", "G8955A"], "INT": ["T97A", "I135V", "R284G"], "RT-p51": ["V21I", "E122K", "S162H", "Q245I", "E248D", "T294P", "K366R", "A369T", "V376T", "M377L", "K388R", "V435I"], "RT-p66": ["V21I", "E122K", "S162H", "Q245I", "E248D", "T294P", "K366R", "A369T", "V376T", "M377L", "K388R", "V435I", "V458I", "Y483H", "K558R"], "gp120": ["S1N", "A3-", "K18R", "A20T", "D34K", "T35A", "V37A", "N57Y", "E59K", "E64N", "M67I", "-109Y", "-111G", "-114G", "-115N", "-116Q", "-117N", "F131Y", "M133I", "E136V", "R138K", "R141V", "S158N", "N159G", "N160S", "S161G", "S162Q", "V180I", "K212N", "K224R", "K241G", "T261K", "S278G", "I281L", "Q287R", "D294N", "D297N", "E309A", "K312A", "K316T", "Q320K", "E326G", "-329K", "N334D", "N335K", "S336P", "S337T", "-368Y", "-372G", "-374D", "T385N", "P389H", "R416N", "V418L", "N432D", "N435S"], "gp41": ["I4L", "A6T", "F8L", "L9F", "I24V", "Q32K", "K77R", "N109D", "D113K", "S125N", "N140T", "K144R", "Q147H", "K172R", "A189T", "N212S", "R214G", "G215D", "G220R", "S256R", "I264T", "A268T", "I298S", "L304F", "N313S", "R317S", "H331N"], "nef": ["A25L", "E28T", "A32P", "E63D", "Y81F", "I101V", "L137I", "E151D", "R188H", "R194K", "R196L", "F202Y", "D205N"], "p1": ["K10S"], "p17": ["V7I", "K12Q", "A54T", "M61I", "A67S", "L68I", "K76R", "A83V", "T115Q"], "p24": ["I2V", "L83M", "P92A", "D128E"], "p6": ["S3N", "P5L", "I14L", "G18R", "D32N", "V36G", "L38S"], "p7": ["K10Q"], "pro": ["L10V", "G16E"], "rev": ["K32R", "R38Q", "S56G", "L75I", "P100T", "S112T", "N116K"], "tat": ["N23T", "K29V", "R57G", "K71E", "T77A", "V80I"], "vif": ["N22H", "Y30H", "G37N", "K50R", "D61E", "K77Q", "D117E", "S118F", "K122R", "K155G", "P156S", "R158K", "R181K", "G182D", "P183H", "S186N", "H192C"], "vpr": ["T19M", "E55A", "R85Q"], "vpu": ["V13I", "K32R", "R41K", "E44Q", "R45K", "T63A", "-71D", "-76P", "-77G", "D78N", "-79D"]}, "labels": {"aa": "INT: T97A, I135V, R284G; RT-p51: V21I, E122K, S162H, Q245I, E248D, T294P, K366R, A369T, V376T, M377L, K388R, V435I; RT-p66: V21I, E122K, S162H, Q245I, E248D, T294P, K366R, A369T, V376T, M377L, K388R, V435I, V458I, Y483H, K558R; gp120: S1N, A3-, K18R, A20T, D34K, T35A, V37A, N57Y, E59K, E64N, M67I, -109Y, -111G, -114G, -115N, -116Q, -117N, F131Y, M133I, E136V, R138K, R141V, S158N, N159G, N160S, S161G, S162Q, V180I, K212N, K224R, K241G, T261K, S278G, I281L, Q287R, D294N, D297N, E309A, K312A, K316T, Q320K, E326G, -329K, N334D, N335K, S336P, S337T, -368Y, -372G, -374D, T385N, P389H, R416N, V418L, N432D, N435S; gp41: I4L, A6T, F8L, L9F, I24V, Q32K, K77R, N109D, D113K, S125N, N140T, K144R, Q147H, K172R, A189T, N212S, R214G, G215D, G220R, S256R, I264T, A268T, I298S, L304F, N313S, R317S, H331N; nef: A25L, E28T, A32P, E63D, Y81F, I101V, L137I, E151D, R188H, R194K, R196L, F202Y, D205N; p1: K10S; p17: V7I, K12Q, A54T, M61I, A67S, L68I, K76R, A83V, T115Q; p24: I2V, L83M, P92A, D128E; p6: S3N, P5L, I14L, G18R, D32N, V36G, L38S; p7: K10Q; pro: L10V, G16E; rev: K32R, R38Q, S56G, L75I, P100T, S112T, N116K; tat: N23T, K29V, R57G, K71E, T77A, V80I; vif: N22H, Y30H, G37N, K50R, D61E, K77Q, D117E, S118F, K122R, K155G, P156S, R158K, R181K, G182D, P183H, S186N, H192C; vpr: T19M, E55A, R85Q; vpu: V13I, K32R, R41K, E44Q, R45K, T63A, -71D, -76P, -77G, D78N, -79D"}}}]}, {"name": "A1_NODE_0000017", "node_attrs": {"div": 0.10983, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C435T", "A509G", "C606A", "T614G", "A680T", "C827T", "A839G", "G1301A", "G1355A", "G1619A", "A1719C", "-1786C", "T1828C", "A1849G", "A1857G", "A1932G", "T1954C", "T2171C", "G2463A", "G2686A", "G2704A", "G2755A", "C3031A", "T3034A", "A3454G", "T3577C", "A3607G", "A3715G", "G3772A", "C3826T", "T3904C", "A4114G", "G4131C", "G4267A", "T4543C", "A4650C", "T4691A", "T4805G", "T4910C", "A5038G", "A5049G", "G5059A", "C5134A", "C5248T", "T5281C", "T5371G", "G5376A", "A5480C", "A5548C", "A5587G", "G5700A", "T5704G", "C5792A", "G5803C", "A5806C", "G5808T", "-5813T", "-5814T", "-5815G", "-5816A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "A5840T", "T5944A", "A6158G", "A6177G", "C6183A", "A6234G", "G6379A", "C6397T", "G6481A", "A6525G", "G6578A", "A6649C", "A6654C", "A6669G", "C6752A", "G6774A", "C6824T", "-6832G", "C6855A", "A6858G", "G6935A", "-6967T", "-6975T", "-6976A", "-6979G", "-6980G", "-6981A", "A7155C", "A7162C", "C7170T", "G7269A", "A7396G", "G7608C", "C7684T", "A7734T", "G7735A", "C7747A", "A7795C", "C7932T", "A7964G", "C8051A", "T8159G", "G8180A", "A8208G", "C8294A", "G8387A", "G8407A"], "RT-p51": ["D312E"], "RT-p66": ["D312E"], "gp120": ["N102D", "-105Y", "-106N", "-107V", "-114S", "K224R", "I265N", "N267T", "Q300K", "R307K", "H324Y", "T371N", "-375Q", "-376E", "-377S", "T436N", "N437T", "T439I", "R472K"], "gp41": ["S102T", "I130L", "K144I", "D148E", "N195K", "T210I", "R214G", "R221G", "W286G", "N302S", "H331N"], "nef": ["E28S"], "p17": ["M61I", "D93E"], "p2": ["T8Q", "-11N"], "p6": ["I14L", "L50S"], "pro": ["K20R", "K45R"], "rev": ["E11D", "K32R", "K39R", "T68E"], "tat": ["Q35P", "K71E", "P75S"], "vif": ["N22H", "H73Q", "K151R", "R158K", "P183H"], "vpr": ["V89G", "D91N"], "vpu": ["L2S", "L33V", "D58E"]}, "labels": {"aa": "RT-p51: D312E; RT-p66: D312E; gp120: N102D, -105Y, -106N, -107V, -114S, K224R, I265N, N267T, Q300K, R307K, H324Y, T371N, -375Q, -376E, -377S, T436N, N437T, T439I, R472K; gp41: S102T, I130L, K144I, D148E, N195K, T210I, R214G, R221G, W286G, N302S, H331N; nef: E28S; p17: M61I, D93E; p2: T8Q, -11N; p6: I14L, L50S; pro: K20R, K45R; rev: E11D, K32R, K39R, T68E; tat: Q35P, K71E, P75S; vif: N22H, H73Q, K151R, R158K, P183H; vpr: V89G, D91N; vpu: L2S, L33V, D58E"}}, "children": [{"name": "KY496622", "node_attrs": {"div": 0.16487, "accession": "KY496622", "clade_membership": {"value": "A1"}, "country": {"value": "ES"}, "date": {"value": 2015.0}, "Strain_name": {"value": "100_117"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G90T", "C155G", "C160T", "C201T", "T214A", "-215A", "-216C", "-217A", "-304T", "T362C", "A398G", "G407A", "A419G", "G428A", "C496A", "G518A", "G524A", "A527G", "C537A", "C539T", "A540C", "T572C", "A585G", "C586T", "A592T", "T596G", "C636G", "A645T", "A653G", "T655C", "T662G", "G665A", "A676G", "G677A", "G703A", "A711G", "C713T", "G755A", "A758G", "A762G", "C767T", "T892C", "G893A", "G956A", "A1034G", "T1058C", "A1076G", "G1090C", "C1103T", "G1109A", "C1137T", "C1214T", "A1289G", "C1304T", "G1311T", "A1319T", "T1329A", "C1330G", "A1349C", "T1350A", "G1418A", "T1451G", "A1452T", "A1467G", "A1497G", "G1499A", "A1546G", "C1556T", "G1586A", "C1610T", "A1656C", "G1657A", "G1664A", "T1676C", "G1687A", "C1693T", "A1694G", "A1703T", "G1718A", "A1735G", "A1742G", "C1756T", "G1777A", "A1790G", "A1832G", "G1835A", "A1839G", "G1845A", "A1846G", "G1963A", "C1985G", "A2002G", "G2008A", "G2027A", "T2035C", "A2059G", "A2075C", "T2080A", "T2149G", "A2215C", "A2241G", "T2251C", "C2353T", "G2380A", "C2499T", "C2533T", "T2542G", "A2563C", "C2589T", "C2613T", "T2679C", "G2710A", "C2828G", "A2829T", "A2839T", "A2842G", "T2890C", "C2910G", "G2914A", "A2925G", "A2977T", "A3019G", "T3045C", "A3142G", "A3192G", "G3250A", "A3251G", "A3283G", "A3286G", "A3292G", "G3304A", "C3376T", "G3379A", "G3383A", "G3385A", "G3442A", "C3449T", "G3463A", "T3497C", "A3630G", "A3658C", "A3697G", "T3742C", "T3746C", "T3754C", "G3765A", "G3766A", "G3769A", "G3770A", "G3787A", "A3808G", "T3811C", "C3892T", "A3919G", "A3979G", "G4063A", "C4129T", "A4130C", "A4159C", "A4176G", "A4178G", "G4243A", "C4258T", "A4293G", "T4321C", "T4405C", "A4661G", "G4673A", "G4677A", "T4702G", "G4708A", "C4715T", "G4723A", "C4728A", "G4765A", "T4769G", "G4774A", "G4779A", "G4856A", "A4863G", 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"A7373C", "A7375G", "A7439C", "G7440A", "G7517C", "C7561A", "C7574A", "A7583C", "A7589G", "A7590C", "G7594T", "C7605A", "C7625T", "G7627T", "G7633T", "G7640C", "C7642A", "A7673G", "T7681C", "G7690C", "A7691C", "T7692A", "G7712A", "A7714G", "A7744G", "A7772G", "T7774C", "A7782G", "C7795T", "C7801T", "T7825C", "G7835A", "T7853C", "T7888G", "A7929T", "A7938G", "T7948A", "G7961A", "A7992G", "A7996C", "G7997A", "G8017C", "A8018G", "G8019A", "A8023G", "C8056T", "C8065T", "C8092T", "A8093G", "T8097C", "G8105A", "G8181T", "A8188G", "A8204G", "T8209C", "C8213T", "A8222T", "C8232T", "G8234A", "A8240G", "A8255G", "T8277C", "T8279G", "T8290C", "T8292G", "C8323A", "T8332G", "T8366A", "T8371G", "A8372G", "T8374A", "G8375A", "G8377A", "C8382T", "A8402G", "A8403C", "G8404A", "A8405G", "C8415G", "A8425G", "A8426T", "T8483C", "C8507T", "C8509T", "C8510A", "G8522A", "A8531C", "C8543A", "G8555A", "A8558T", "A8564G", "A8584T", "G8588A", "T8594G", "G8597T", "C8607T", "A8608T", "A8647G", "C8648G", "G8657A", 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"N319Q", "E323K", "-328N", "N335S", "T344V", "G361S", "-368E", "N369T", "-372A", "-374I", "-379S", "T385N", "M398L", "A402T", "Q412K", "R416Q", "V418I", "N433S", "N434T", "D449I", "T471S", "V478M", "E479G"], "gp41": ["G3T", "I24L", "R46Q", "V72L", "L91I", "T94P", "N96A", "S101Y", "Q108Y", "E110D", "D113Q", "I124V", "Q129D", "L130Q", "E137K", "N157D", "N160S", "V178I", "H209L", "N212S", "G220R", "D230G", "R231S", "G232S", "S239D", "I264V", "L265S", "A268T", "G293I", "I301V", "L304F", "I307L", "A310V", "V311I", "N313G", "I318V", "I325T", "C326G", "L330R"], "nef": ["S8R", "I10R", "V11E", "G12A", "P14S", "I20M", "R21Q", "A56V", "E63D", "Y81F", "L85F", "H89F", "Y102W", "E108D", "V146E", "D149E", "S163C", "E176D", "R178K", "I182R", "R188K", "F191L", "R194L", "L198K"], "p1": ["S9H"], "p17": ["A54K", "L68I", "K69Q", "T84V", "Y86F", "C87W", "L101V", "I104L", "I107T", "N109K", "K114R", "G123E", "S126G"], "p2": ["N9Q", "-10S"], "p24": ["I11V", "M54T", "S120A", "A194S", "S207T"], "p6": ["S3N", "P5L", "E19G", "I21M", "P25L", "R33K", "V36A"], "p7": ["M1V", "R11G", "N27S"], "pro": ["T12A", "V13I", "K14R", "G16E", "L63A", "V77I", "I93L"], "rev": ["V16I", "S34T", "R38Q", "R50Q", "E57R", "I59V", "P70S", "L73F", "H82C", "V104G", "G111D", "T114A"], "tat": ["V4I", "Q17R", "T19A", "K24N", "K29R", "C31S", "T58S", "S62N", "I74L", "T77A", "V80D"], "vif": ["M29I", "V31I", "G37D", "F39C", "R41K", "S46N", "H48N", "G60E", "D61E", "R63K", "V65I", "R93D", "I124L", "S130R", "R132E", "T155V", "K157R", "T170A", "R181K", "G185E"], "vpr": ["H40Q", "Y45H", "I63T", "V70I", "Q77R", "G94D"], "vpu": ["E5Q", "C7W", "L16A", "E29Q", "Y30C", "K32R", "R45K", "A62L", "T63Q", "E66D", "-79Y", "N80D", "N81L", "L82G"]}, "labels": {"aa": "INT: S119P, N134S, I135V, K173R; RT-p51: E40D, K49R, S123N, T135I, T165I, S173L, I195T, Q245V, E248D, A272G, K277R, V317A, K366R, T386A, M403I, E430K; RT-p66: E40D, K49R, S123N, T135I, T165I, S173L, I195T, Q245V, E248D, A272G, K277R, V317A, K366R, T386A, M403I, E430K, S468P, K512R, R557K, V559I; gp120: N57P, E64N, Y105H, N108T, -109L, N110K, -111G, -115T, -116N, -117T, -118S, -120P, -121N, -122M, -123K, -124E, I126V, K127R, Q142K, Y145H, R150K, Q155S, S162Q, S181T, N201R, K212R, V227A, V242I, T250S, N251D, T261K, N272G, K277T, V279I, H280R, H302Y, T308A, E309A, K316G, V318A, N319Q, E323K, -328N, N335S, T344V, G361S, -368E, N369T, -372A, -374I, -379S, T385N, M398L, A402T, Q412K, R416Q, V418I, N433S, N434T, D449I, T471S, V478M, E479G; gp41: G3T, I24L, R46Q, V72L, L91I, T94P, N96A, S101Y, Q108Y, E110D, D113Q, I124V, Q129D, L130Q, E137K, N157D, N160S, V178I, H209L, N212S, G220R, D230G, R231S, G232S, S239D, I264V, L265S, A268T, G293I, I301V, L304F, I307L, A310V, V311I, N313G, I318V, I325T, C326G, L330R; nef: S8R, I10R, V11E, G12A, P14S, I20M, R21Q, A56V, E63D, Y81F, L85F, H89F, Y102W, E108D, V146E, D149E, S163C, E176D, R178K, I182R, R188K, F191L, R194L, L198K; p1: S9H; p17: A54K, L68I, K69Q, T84V, Y86F, C87W, L101V, I104L, I107T, N109K, K114R, G123E, S126G; p2: N9Q, -10S; p24: I11V, M54T, S120A, A194S, S207T; p6: S3N, P5L, E19G, I21M, P25L, R33K, V36A; p7: M1V, R11G, N27S; pro: T12A, V13I, K14R, G16E, L63A, V77I, I93L; rev: V16I, S34T, R38Q, R50Q, E57R, I59V, P70S, L73F, H82C, V104G, G111D, T114A; tat: V4I, Q17R, T19A, K24N, K29R, C31S, T58S, S62N, I74L, T77A, V80D; vif: M29I, V31I, G37D, F39C, R41K, S46N, H48N, G60E, D61E, R63K, V65I, R93D, I124L, S130R, R132E, T155V, K157R, T170A, R181K, G185E; vpr: H40Q, Y45H, I63T, V70I, Q77R, G94D; vpu: E5Q, C7W, L16A, E29Q, Y30C, K32R, R45K, A62L, T63Q, E66D, -79Y, N80D, N81L, L82G"}}}, {"name": "JF683782", "node_attrs": {"div": 0.15607, "accession": "JF683782", "clade_membership": {"value": "A1"}, "country": {"value": "CY"}, "date": {"value": 2008.0}, "Strain_name": {"value": "CY235"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T377C", "G378T", "T396C", "C426A", "T479C", "A495G", "A497G", "G518T", "A520G", "C531T", "G542T", "T571A", "A654C", "C657A", "A692C", "A714C", "C723A", "A724G", "G770A", "G785A", "A806G", "C851T", "A891G", "G899A", "C917T", "T944C", "A968G", "A980G", "G987C", "T988C", "G1019A", "A1050G", "A1070G", "A1073C", "G1089A", "G1173C", "T1174A", "T1175G", "C1211T", "A1241G", "G1278A", "G1279A", "A1292C", "A1295C", "T1334C", "T1358C", "A1359T", "G1405C", "C1406T", "T1439C", "T1444C", "A1452G", "-1455A", "-1456A", "-1457C", "A1459T", "C1460A", "A1463G", "T1484C", "G1498A", "C1598T", "A1701T", "G1778C", "G1779-", "A1780-", "A1781-", "C1782-", "A1783-", "G1784-", "G1785C", "C1787T", "A1790C", "A1838G", "A1907G", "A1920G", "A1951G", "T1987C", "T2087C", "A2154G", "G2155A", "T2251A", "T2257C", "A2293G", "A2455G", "G2456C", "A2462G", "G2566A", "C2584T", "T2612G", "A2626C", "A2630G", "C2653T", "G2727A", "C2728A", "G2770A", "C2857T", "G2878A", "A2884G", "A2929G", "A2938G", "A2969G", "A3001G", "C3023T", "A3027G", "A3080C", "T3112C", "A3145G", "G3166T", "G3208A", "T3222C", "A3224T", "A3264G", "A3265G", "A3293C", "C3294T", "T3328C", "T3358C", "T3399C", "A3532G", "C3541T", "A3619T", "T3634C", "C3649T", "G3664A", "A3768G", "A3808T", "G3816A", "A3817G", "G3836A", "A3866G", "G3896A", "G3952A", "G3955A", "A3964G", "A3988G", "G3989A", "C4072T", "G4092C", "C4144T", "T4151G", "T4153C", "A4175G", "G4195A", "T4240C", "C4428T", "A4495G", "G4573A", "T4606C", "A4687G", "G4695A", "T4701A", "T4702A", "T4703A", "G4774C", "G4786A", "T4799G", "A4816G", "A4826C", "C4890A", "A4895G", "C4914T", "C4939G", "A4988T", "A4993C", "T5003C", "C5006T", "G5086A", "A5167G", "C5168T", "T5188A", "T5197C", "A5215G", "A5240G", "T5245C", "A5247C", "G5276C", "T5294C", "C5333T", "A5345G", "T5356C", "A5453T", "C5457T", "T5483A", "C5496A", "G5534A", "A5563G", "A5581G", "G5619A", "T5626A", "C5651T", "C5653T", "C5659A", "C5678T", "A5689T", "T5695A", "A5696T", "A5781G", "A5793T", "T5799C", "T5801C", "A5804T", "A5805G", "-5812G", "-5817G", "T5834C", "C5862T", "C5869A", "T5870A", "T5871C", "G5917A", "G5954A", "A5955C", "T5956A", "G5963A", "C5998T", "A6001G", "A6016G", 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"A21T", "I31V", "D41N", "M60I", "V72I", "G106A", "S119T", "F126V", "N134D", "T218I"], "RT-p51": ["K20R", "D121H", "S123D", "S173A", "E177D", "I179V", "S211K", "I292V", "K311R", "I329L", "K357N", "V376A", "M377L", "K390R", "T400L", "V435A"], "RT-p66": ["K20R", "D121H", "S123D", "S173A", "E177D", "I179V", "S211K", "I292V", "K311R", "I329L", "K357N", "V376A", "M377L", "K390R", "T400L", "V435A", "K558R"], "gp120": ["A3V", "N5K", "L6T", "D34T", "V37M", "N70L", "S104G", "N108S", "-109I", "-111N", "N113Y", "-115I", "E125-", "I126-", "K127-", "N132D", "M133V", "E136K", "K143N", "V153I", "Q155H", "S158-", "N159-", "N160-", "S161-", "N206S", "T208K", "Q218H", "E240N", "K241R", "V242T", "T269I", "N272S", "Y290F", "N304E", "S306N", "K307E", "T313A", "Q315T", "N319E", "E323T", "E326R", "-329K", "I332T", "N334K", "N335G", "S336P", "G361K", "S365T", "N370A", "-372G", "-374V", "N378V", "-379N", "-381A", "-382G", "-383N", "D384T", "T387F", "N397R", "V414R", "V418E", "I425L", "N432G", "N434A", "K474R", 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"Q136P", "T155A", "R167K"], "vpr": ["H28Q", "I46V", "N48T", "E58Q", "I84T"], "vpu": ["C7S", "A15V", "L18I", "T24I", "I28L", "Y30I", "E60D", "L61T", "A62D", "T63E", "I65A", "E66L", "M67L", "G68-", "-69V", "-70E", "-71M", "-72G", "-73N", "-74Y", "-75D", "-76P", "-77G", "D78V", "-79D"]}, "labels": {"aa": "INT: E11D, R14K, A21T, I31V, D41N, M60I, V72I, G106A, S119T, F126V, N134D, T218I; RT-p51: K20R, D121H, S123D, S173A, E177D, I179V, S211K, I292V, K311R, I329L, K357N, V376A, M377L, K390R, T400L, V435A; RT-p66: K20R, D121H, S123D, S173A, E177D, I179V, S211K, I292V, K311R, I329L, K357N, V376A, M377L, K390R, T400L, V435A, K558R; gp120: A3V, N5K, L6T, D34T, V37M, N70L, S104G, N108S, -109I, -111N, N113Y, -115I, E125-, I126-, K127-, N132D, M133V, E136K, K143N, V153I, Q155H, S158-, N159-, N160-, S161-, N206S, T208K, Q218H, E240N, K241R, V242T, T269I, N272S, Y290F, N304E, S306N, K307E, T313A, Q315T, N319E, E323T, E326R, -329K, I332T, N334K, N335G, S336P, G361K, S365T, N370A, -372G, -374V, N378V, -379N, -381A, -382G, -383N, D384T, T387F, N397R, V414R, V418E, I425L, N432G, N434A, K474R, E479Q; gp41: I4L, H53Q, L54M, K56R, K77G, Q108L, N109D, E110K, D113N, L118M, N133T, E137Q, A151E, N166H, K195R, I210F, E224G, D247E, S251N, L285I, L288I, G293S, R324G, L330I; nef: I10L, E15K, V16I, A25V, A26T, A27E, G29R, V33Y, S34Q, Q35N, D36-, H40D, G41E, V43S; p17: A15S, L31M, E62G, P66S, K69N, F79Y, I107L, Q108K, K127Q, Q130R; p2: V7A, N9H, -10A, -12I, I13M; p24: M54V, V86P, M96I, T107A, Q114H, V148Q, G183N, E187D, T210S, G225A; p6: T8S, R33S, E34P, Q35-, V36-; p7: R11K; pro: K14E, N37D, K41R, L63P; rev: D7N, Y28F, K30E, I55L, P67S, H86C, C89S, S103Y, V104W, S106H, G111E, K115E; tat: N23S, Y26F, V36D, N40K, R53K, T58P, K63E, I69V, Q76R; vif: V7A, K34R, G37N, F39K, R63T, R67K, K77R, Q80H, L102M, H110Y, S118C, R132S, E134D, Q136P, T155A, R167K; vpr: H28Q, I46V, N48T, E58Q, I84T; vpu: C7S, A15V, L18I, T24I, I28L, Y30I, E60D, L61T, A62D, T63E, I65A, E66L, M67L, G68-, -69V, -70E, -71M, -72G, -73N, -74Y, -75D, -76P, -77G, D78V, -79D"}}}]}]}]}]}]}, {"name": "A1_NODE_0000018", "node_attrs": {"div": 0.08848999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T161G", "A303T", "C467T", "A562G", "A762G", "A776G", "C1187T", "C1295A", "G1298A", "A1499G", "A1592G", "G1619A", "A1743G", "A1846G", "T1957C", "T2095C", "G2273A", "C2356T", "T2392C", "C2615A", "G2704A", "A2809G", "C2828A", "G2902A", "C2930T", "C2978T", "T3433C", "A4175G", "G4995A", "G5030A", "A5167G", "T5478C", "G5644A", "T5851C", "T5956G", "-6178T", "-6179G", "-6195A", "G6224-", "G6225-", "A6226-", "A6232G", "G6311A", "T6445C", "T6457G", "G6583A", "A6776T", "C6964T", "T7107A", "A7152G", "A7628G", "G7943A", "T8167C", "A8409G", "C8509T"], "RT-p51": ["V60I", "Q174K", "D250E"], "RT-p66": ["Q174K", "D250E"], "gp120": ["D34E", "I126-", "V153I", "E240G", "M243K", "T308S", "V418E", "N433S"], "nef": ["Q22R", "T23A", "E63D", "E151D"], "p17": ["K76R"], "p24": ["I11V", "T207A"], "p6": ["T22A", "P36-"], "rev": ["S107P"], "vif": ["A137T"], "vpr": ["E25D"], "vpu": ["V13I", "N81D"]}, "labels": {"aa": "RT-p51: V60I, Q174K, D250E; RT-p66: Q174K, D250E; gp120: D34E, I126-, V153I, E240G, M243K, T308S, V418E, N433S; nef: Q22R, T23A, E63D, E151D; p17: K76R; p24: I11V, T207A; p6: T22A, P36-; rev: S107P; vif: A137T; vpr: E25D; vpu: V13I, N81D"}}, "children": [{"name": "A1_NODE_0000019", "node_attrs": {"div": 0.09786999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["-216T", "T227C", "C606A", "G607A", "G803A", "C1062A", "C1063T", "C1214T", "A1263T", "G1271T", "G1278A", "T1280C", "A1292C", "A1350C", "T1451G", "T1724G", "G1963A", "T2080C", "G2215A", "G2566A", "A2881G", "A2969G", "A3142G", "C3394T", "A3684G", "T3994C", "A4293G", "G4677A", "G4737A", "G4968A", "G5185A", "T5371G", "G5448T", "G5493A", "A5581G", "T5611A", "G5668A", "T5688C", "A5702G", "A5711G", "T5787A", "A5788T", "C5789T", "G5839A", "G5963A", "A6023G", "G6044A", "T6160C", "-6167G", 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"T9130C", "G9137A"], "INT": ["N134D", "Q136K", "T218I", "K219N", "N222K"], "RT-p51": ["I50V", "E122K", "S123N", "S173L", "T200A", "F214L", "Q245K", "A272P", "K275Q", "K277R", "T294P", "E297K", "A369T", "K390R", "M403R"], "RT-p66": ["I50V", "V60I", "E122K", "S123N", "S173L", "T200A", "F214L", "Q245K", "A272P", "K275Q", "K277R", "T294P", "E297K", "A369T", "K390R", "M403R", "S468T", "I482V", "R512K", "E514D", "R527Q"], "gp120": ["A3T", "K18R", "E34D", "V37M", "E64K", "-105A", "-106I", "-107T", "-109D", "-111R", "-112G", "-113N", "-114E", "-115T", "-116G", "-117I", "-118N", "-119R", "-120T", "-121V", "-122E", "-123T", "-124T", "-126M", "K127T", "K140R", "Q142K", "Y145N", "S146A", "N157G", "N158E", "A172V", "S181T", "P210T", "K212R", "T216S", "K241Q", "T250S", "P263S", "K265P", "K277R", "V279I", "I281L", "A288T", "Y290F", "G293D", "D294I", "R307E", "E309K", "T313A", "K316E", "E323Q", "F325W", "N327-", "-328N", "N334K", "-368N", "-370D", "-372K", "-373S", "-374N", "-375E", "N378-", "T380-", "N383-", "D384-", "I396V", "M398V", "M406I", "Q412A", "E418N", "T427V", "N432A", "S433T", "N437D", "D446N"], "gp41": ["I4L", "L9I", "I24V", "T94P", "N96T", "D129Q", "I130L", "D148E", "N157S", "N166K", "K172R", "A189T", "T210P", "N212S", "R214T", "L216P", "I235T", "R259H", "A267V", "T270A", "S277N", "Y284L", "L285G", "G293S", "I301L", "L330R", "H331N", "L340A", "L344F"], "nef": ["G3S", "A23T", "G83A", "L100M", "R104K", "Y120F", "Y135N", "F143Y", "M182I", "K184R", "R194L", "L198Q", "F202Y"], "p17": ["A15T", "E42D", "E55I", "Q63A", "L75I", "F79Y", "K95R", "I104V", "S125N"], "p2": ["V7A"], "p24": ["I58V", "V86T", "H87Q", "I91F", "K131R", "A177G", "V191I", "G225S"], "p6": ["P5T", "I14L", "E19G", "A22F", "P25-", "-26Q", "K31R", "-36G", "S51L"], "p7": ["N27Q"], "pro": ["K45R"], "rev": ["E11G", "R14T", "V16I", "Y28S", "K32N", "A37T", "S54A", "A68E", "S86C", "D88G", "P100I", "V102T", "S103G", "V104L", "P107S", "V108A", "I109V", "G111E"], "tat": ["D2E", "P3L", "T19A", "A21P", "N23S", "N24S", "Q35P", "N40Q", "R52W", "Q60H", "S62N", "T77A", "G79R", "S81P", "G83D"], "vif": ["K33R", "K36T", "F39R", "R41I", "E45D", "V51I", "G60R", "R63K", "L64I", "T74P", "I124L", "Q136H", "K151R", "P156S", "M189I"], "vpr": ["Q11P", "E17Q", "D25E", "N48E", "R85P", "D91N", "S93A"], "vpu": ["E5Q", "I13V", "L18I", "L61T", "S62E", "T63E", "V65-", "E66-", "M67-", "G68-"]}, "labels": {"aa": "INT: N134D, Q136K, T218I, K219N, N222K; RT-p51: I50V, E122K, S123N, S173L, T200A, F214L, Q245K, A272P, K275Q, K277R, T294P, E297K, A369T, K390R, M403R; RT-p66: I50V, V60I, E122K, S123N, S173L, T200A, F214L, Q245K, A272P, K275Q, K277R, T294P, E297K, A369T, K390R, M403R, S468T, I482V, R512K, E514D, R527Q; gp120: A3T, K18R, E34D, V37M, E64K, -105A, -106I, -107T, -109D, -111R, -112G, -113N, -114E, -115T, -116G, -117I, -118N, -119R, -120T, -121V, -122E, -123T, -124T, -126M, K127T, K140R, Q142K, Y145N, S146A, N157G, N158E, A172V, S181T, P210T, K212R, T216S, K241Q, T250S, P263S, K265P, K277R, V279I, I281L, A288T, Y290F, G293D, D294I, R307E, E309K, T313A, K316E, E323Q, F325W, N327-, -328N, N334K, -368N, -370D, -372K, -373S, -374N, -375E, N378-, T380-, N383-, D384-, I396V, M398V, M406I, Q412A, E418N, T427V, N432A, S433T, N437D, D446N; gp41: I4L, L9I, I24V, T94P, N96T, D129Q, I130L, D148E, N157S, N166K, K172R, A189T, T210P, N212S, R214T, L216P, I235T, R259H, A267V, T270A, S277N, Y284L, L285G, G293S, I301L, L330R, H331N, L340A, L344F; nef: G3S, A23T, G83A, L100M, R104K, Y120F, Y135N, F143Y, M182I, K184R, R194L, L198Q, F202Y; p17: A15T, E42D, E55I, Q63A, L75I, F79Y, K95R, I104V, S125N; p2: V7A; p24: I58V, V86T, H87Q, I91F, K131R, A177G, V191I, G225S; p6: P5T, I14L, E19G, A22F, P25-, -26Q, K31R, -36G, S51L; p7: N27Q; pro: K45R; rev: E11G, R14T, V16I, Y28S, K32N, A37T, S54A, A68E, S86C, D88G, P100I, V102T, S103G, V104L, P107S, V108A, I109V, G111E; tat: D2E, P3L, T19A, A21P, N23S, N24S, Q35P, N40Q, R52W, Q60H, S62N, T77A, G79R, S81P, G83D; vif: K33R, K36T, F39R, R41I, E45D, V51I, G60R, R63K, L64I, T74P, I124L, Q136H, K151R, P156S, M189I; vpr: Q11P, E17Q, D25E, N48E, R85P, D91N, S93A; vpu: E5Q, I13V, L18I, L61T, S62E, T63E, V65-, E66-, M67-, G68-"}}}, {"name": "MT942889", "node_attrs": {"div": 0.14769, "accession": "MT942889", "clade_membership": {"value": "A1"}, "country": {"value": "RW"}, "date": {"value": 2008.0}, "Strain_name": {"value": "R3103M_175079_1"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G161C", "T214A", "-215G", "-217T", "A301C", "A302T", "T303-", "G386A", "A389G", "T396C", "C426A", "C471A", "G495A", "T506C", "G518A", "C537G", "A540C", "A554G", "A557G", "C558G", "A576G", "C583T", "A585G", "C586T", "T614G", "T635C", "A638G", "T662G", "G665A", "C679A", "A711G", "A714C", "A743G", "T774G", "A806G", "C823G", "G837A", "T892C", "C917T", "G920A", "A968C", "G1089A", "G1139A", "A1160G", "A1192G", "G1199A", "A1267C", "G1268A", "G1279C", "C1385T", "C1406A", "A1452C", "-1455A", "-1456A", "-1457T", "A1458-", "A1459-", "C1460-", "G1474A", "A1495G", 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"A8746T", "C8751T", "A8762G", "A8824C", "A8859G", "A8879G", "G8905A", "A8912C", "A8915C", "A8922C", "T8923A", "C8927A", "C8928A", "C8948T", "A8980T", "-9014G", "T9073C", "T9097G", "-9108C"], "INT": ["S17N", "N134G"], "RT-p51": ["K11A", "T39M", "E44D", "I60V", "S123G", "Q245V", "E250D", "R356K", "A360T", "K366R", "E370D", "K388R", "E399D", "L429V", "V435I"], "RT-p66": ["K11A", "T39M", "E44D", "S123G", "Q245V", "E250D", "R356K", "A360T", "K366R", "E370D", "K388R", "E399D", "L429V", "V435I", "V467I", "H483Y", "L517V", "N519S", "K524E", "S554Q"], "gp120": ["A2M", "E4D", "E21D", "T35K", "V37K", "I56R", "E59V", "E64N", "K69N", "N71S", "-105D", "-106M", "-107R", "T110-", "E125-", "K127-", "N128-", "L137I", "K141Q", "Q155E", "N157-", "N159D", "S162H", "K203R", "K241R", "E247K", "T255I", "V258I", "L260F", "E262N", "P263T", "K265N", "N267T", "T269V", "D294E", "R307F", "S308N", "E309Q", "K312D", "K319S", "Q320E", "R322K", "H324R", "-326R", "S347T", "-368Y", "N369H", "-370S", "T371N", "P389Q", "V402T", "Q412P", "R416K", "N432I", "N434S", "T436E", "N437S", "E479T"], "gp41": ["I24L", "V72L", "K77R", "S107T", "N109E", "D113E", "N126S", "A156S", "D163N", "S165T", "I175V", "I177V", "I193V", "T210A", "R214V", "P219L", "E228G", "G230D", "D232T", "L273R", "K280R", "W286G", "L290I", "R294Q", "I298S", "L304V", "R317S", "V318I", "I319L", "I321L", "C326G"], "nef": ["E15Q", "I20M", "P24S", "E28T", "I43V", "S52N", "-53Y", "-54V", "C55-", "A56-", "E64D", "L85V", "I133T", "Y135F", "N161T", "M173V", "R188H", "L191F", "R194Q"], "p1": ["K4R"], "p17": ["L31M", "L46I", "A54T", "M61I", "L68V", "K69Q", "L75V", "T81A", "A83V", "T84V", "N109K", "T115K", "S126G", "K127Q"], "p2": ["T8Q", "N9Q", "-10P", "-11N"], "p24": ["L15V", "A31G", "V36I", "M54T", "E79D", "G120S", "K154R", "Q179P", "N183T"], "p6": ["R33K", "E34D", "-36A", "P49L"], "p7": ["R3K", "K10R", "R26K"], "pro": ["L10I", "K70R"], "rev": ["D7N", "E10D", "Y28C", "K32S", "S34T", "R50N", "E57Q", "L78I", "T91A", "P100A", "V104G", "S106P", "V108D", "N116K"], "tat": ["L39I", "R53K", "P70S", "I74M", "G79W", "V80D", "P84S"], "vif": ["V51T", "V65I", "H110Y", "D117E", "Q127E", "T137A", "N140P", "T155K", "T157R", "T159K", "K168I", "T170A", "R181K", "S186N"], "vpr": ["H28Q", "H45Y", "Y50H"], "vpu": ["E5N", "L34R", "R37K", "I43L", "T63K", "-69N", "-70Y", "-71D", "-72L", "-73G", "-74N", "-75A", "-76N", "-77N", "D81-"]}, "labels": {"aa": "INT: S17N, N134G; RT-p51: K11A, T39M, E44D, I60V, S123G, Q245V, E250D, R356K, A360T, K366R, E370D, K388R, E399D, L429V, V435I; RT-p66: K11A, T39M, E44D, S123G, Q245V, E250D, R356K, A360T, K366R, E370D, K388R, E399D, L429V, V435I, V467I, H483Y, L517V, N519S, K524E, S554Q; gp120: A2M, E4D, E21D, T35K, V37K, I56R, E59V, E64N, K69N, N71S, -105D, -106M, -107R, T110-, E125-, K127-, N128-, L137I, K141Q, Q155E, N157-, N159D, S162H, K203R, K241R, E247K, T255I, V258I, L260F, E262N, P263T, K265N, N267T, T269V, D294E, R307F, S308N, E309Q, K312D, K319S, Q320E, R322K, H324R, -326R, S347T, -368Y, N369H, -370S, T371N, P389Q, V402T, Q412P, R416K, N432I, N434S, T436E, N437S, E479T; gp41: I24L, V72L, K77R, S107T, N109E, D113E, N126S, A156S, D163N, S165T, I175V, I177V, I193V, T210A, R214V, P219L, E228G, G230D, D232T, L273R, K280R, W286G, L290I, R294Q, I298S, L304V, R317S, V318I, I319L, I321L, C326G; nef: E15Q, I20M, P24S, E28T, I43V, S52N, -53Y, -54V, C55-, A56-, E64D, L85V, I133T, Y135F, N161T, M173V, R188H, L191F, R194Q; p1: K4R; p17: L31M, L46I, A54T, M61I, L68V, K69Q, L75V, T81A, A83V, T84V, N109K, T115K, S126G, K127Q; p2: T8Q, N9Q, -10P, -11N; p24: L15V, A31G, V36I, M54T, E79D, G120S, K154R, Q179P, N183T; p6: R33K, E34D, -36A, P49L; p7: R3K, K10R, R26K; pro: L10I, K70R; rev: D7N, E10D, Y28C, K32S, S34T, R50N, E57Q, L78I, T91A, P100A, V104G, S106P, V108D, N116K; tat: L39I, R53K, P70S, I74M, G79W, V80D, P84S; vif: V51T, V65I, H110Y, D117E, Q127E, T137A, N140P, T155K, T157R, T159K, K168I, T170A, R181K, S186N; vpr: H28Q, H45Y, Y50H; vpu: E5N, L34R, R37K, I43L, T63K, -69N, -70Y, -71D, -72L, -73G, -74N, -75A, -76N, -77N, D81-"}}}]}, {"name": "A1_NODE_0000020", "node_attrs": {"div": 0.09127999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A706G", "A1350G", "C2845A", "T3577C", "G3718A", "G3796A", "A3907G", "T3943C", "G4078A", "A5795C", "G5802T", "G6333A", "A6636C", "A6800C", "G6955-", "A6959-", "G8561A", "T8913C", "T8923G", "G8929A"], "RT-p66": ["V60I"], "gp120": ["K316Q", "N334T", "N437T"], "gp41": ["N109D", "C326G"], "nef": ["E28T"], "vpr": ["I63T"], "vpu": ["T2S"]}, "labels": {"aa": "RT-p66: V60I; gp120: K316Q, N334T, N437T; gp41: N109D, C326G; nef: E28T; vpr: I63T; vpu: T2S"}}, "children": [{"name": "A1_NODE_0000021", "node_attrs": {"div": 0.09803999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G665A", "C1005G", "C1040T", "T1451A", "G1731A", "A1772-", "T1792C", "C1825T", "G2113T", "G2311A", "T2452C", "G2821A", "G2926A", "G3340A", "G4151T", "A4178G", "T4441A", "A4522G", "G4677A", "T4776A", "A5299G", "T5339C", "G5437C", "A5480T", "T5492A", "-5809G", "-5810G", "-5811G", "-6177A", "-6180T", "C6184T", "-6224G", "-6226A", "G6323A", "G6379A", "A6575G", "A6602T", "C6613T", "-6689A", "A6810C", "T6828G", "T6829G", "T6961-", "-6984C", "C7625T", "G7627C", "T7702G", "A8104C", "C8146A", "T8159G", "A8173G", "C8213T", "T8456A", "G8528A", "C8568T"], "INT": ["V126F", "I135V", "N222K"], "RT-p51": ["E6D", "Q245K"], "RT-p66": ["E6D", "Q245K"], "gp120": ["-105D", "-126M", "K241E", "K243R", "T250S", "K265S", "V279I", "K319T", "H324Y", "F325W", "N369-", "T371-", "-381E"], "gp41": ["Q108Y", "N133K", "W286G", "L304F"], "nef": ["D38E"], "p17": ["N124S"], "p24": ["I91V", "P92A"], "p6": ["G18R", "L38S", "P49L"], "rev": ["P100T", "I109V"], "tat": ["A21P", "Q35L", "L39Q"], "vif": ["L64I"], "vpr": ["R85P"]}, "labels": {"aa": "INT: V126F, I135V, N222K; RT-p51: E6D, Q245K; RT-p66: E6D, Q245K; gp120: -105D, -126M, K241E, K243R, T250S, K265S, V279I, K319T, H324Y, F325W, N369-, T371-, -381E; gp41: Q108Y, N133K, W286G, L304F; nef: D38E; p17: N124S; p24: I91V, P92A; p6: G18R, L38S, P49L; rev: P100T, I109V; tat: A21P, Q35L, L39Q; vif: L64I; vpr: R85P"}}, "children": [{"name": "AF457063", "node_attrs": {"div": 0.1344, "accession": "AF457063", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 1999.0}, "Strain_name": {"value": "KNH1088"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "A513G", "T514C", "G519A", "A520T", "A521G", "A541G", "G542A", "C558T", "G562A", "G671A", "A675C", "G687A", "G690A", "A711-", "G712-", "C713-", "A714-", "A715-", "G716-", "G717-", "T718-", "C719-", "C748T", "C851T", "T944C", "T978C", "A1002C", "T1003C", "A1017C", "T1058C", "C1136T", "T1143C", "C1220T", "C1299T", "G1302A", "G1355A", "A1359T", "G1388A", "T1421C", "G1430A", "T1439C", "T1444C", "G1498A", "A1526G", "A1588G", "G1589A", "A1601G", "A1619G", "T1682C", "A1719C", "G1727A", "T1749C", "-1772G", "G1777A", "-1785A", "-1786A", "G1794A", "C1826A", "A1839G", "C1960T", "G2111A", "A2112G", "A2203G", "C2434T", "A2462G", "G2473A", "G2686A", "A2693G", "T2770C", "C2831T", "A2839T", "A2842G", "G2909C", "A2919G", "C2952T", "T2968G", "A2969G", "A2971G", "G3029A", "A3070G", "A3136G", "A3151G", "A3193G", "A3224C", "C3266T", "A3283G", "C3307T", "T3310C", "T3331C", "G3385A", "A3454G", "A3457G", "G3477A", "A3484G", "T3496C", "A3521C", "C3541A", "T3551C", "A3654T", "T3778C", "G3834A", "C3857T", "T3904C", "G3925A", "A3934G", "T3946C", "A3955G", "C4072T", "G4145A", "A4156G", "A4176G", "T4198C", "G4243A", "G4264A", "G4267A", "C4569T", "T4667C", "A4686G", "T4697C", "C4724T", "A4725G", "G4766A", "T4769A", "G4774A", "G4802A", "C4820G", "C4889T", "A4964G", "T4982G", "A4988C", "A5049G", "C5050A", "C5062G", "A5119G", "C5134A", "G5143A", "T5197A", "A5200G", "T5203C", "C5221T", "A5278G", "T5286C", "T5292C", "T5293C", "G5359C", "T5371C", "C5397A", "T5430C", "A5447C", "T5451C", "A5471T", "C5479G", "T5483C", "C5496A", "G5545A", "A5548G", "C5551T", "G5561A", "A5581G", "T5602G", "T5636C", "G5643C", "G5673A", "G5700A", "T5704G", "C5707T", "G5712A", "G5747C", "A5760G", "A5794G", "A5796C", "-5824A", "G5830A", "G5839T", "A5840T", "A5848G", "G5858A", "C5859A", "C5869A", "C5887T", "G5917C", "G5954A", "A5957C", "C5958G", "A5995G", "A6023G", "G6046C", "C6067A", "A6086G", "C6087A", "T6091C", "C6097T", "T6160C", "-6165G", "-6167G", "-6169T", "-6170G", "-6171T", "-6172C", "C6189A", "A6192G", "T6193C", "A6195T", "A6197-", "A6200-", "C6202-", "A6212-", "-6220G", "-6225G", "T6246A", "C6278A", "T6289C", "T6307A", "A6311G", "A6316G", "A6329G", "A6330G", "T6340C", "G6391A", "T6395A", "G6451A", "T6460C", "G6481A", "A6489G", "G6490A", "A6573G", "T6582G", "T6586C", "A6648C", "A6682G", "A6686G", "T6688A", "G6693A", "C6721T", "T6733A", "T6766C", "A6775C", "G6779A", "T6793C", "A6796G", "C6807T", "A6820G", "A6823T", "C6824T", "A6848G", "T6849C", "A6857C", "A6858C", "T6875A", "A6907G", "T6952A", "G6954A", "A6960-", "-6966G", "-6967C", "-6968T", "-6969G", "-6970G", "-6974A", "-6975C", "-6976G", "-6977A", "-6979A", "-6980C", "-6981T", "-6982G", "-6983T", "-6994A", "-6998T", "-6999C", "T7009C", "G7058A", "T7059C", "G7102A", "A7108G", "G7147T", "A7151G", "A7161C", "G7190A", "G7197A", "A7313C", "A7315G", "C7324A", "A7372C", "C7392T", "C7627T", "T7630G", "G7631C", "C7655T", "A7673G", "T7675C", "G7688C", "C7690A", "A7693G", "A7700C", "C7703T", "G7729A", "C7747T", "G7765A", "A7773G", "T7796A", "A7800G", "C7801A", "A7852G", "G7873A", "A7943G", "C8047T", "C8051A", "C8062T", "C8065T", "G8134C", "C8147A", "T8171G", "A8191G", "C8221T", "C8294A", "C8323G", "G8329A", "G8394A", "A8395G", "A8403C", "G8404A", "G8407A", "G8409A", "A8425G", "A8438G", "T8451C", "A8474G", "C8499T", "G8522A", "G8555A", "T8595C", "T8636A", "A8643G", "A8647G", "C8648G", "A8656G", "C8688A", "A8696G", "T8711C", "T8740C", "A8746T", "A8797C", "C8812A", "G8816A", "T8843C", "A8852G", "T8864G", "G8888A", "A8893G", "A8915G", "A8929G", "T8935A", "C8957T", "G8977A", "A8978C", "C8979A", "A8980G", "G8991A", "G9007A", "A9009T", "G9010-", "G9011-", "T9012-", "G9013-", "T9014-", "G9015-", "G9016-", "T9017-", "T9018-", "-9108C", "A9134T"], "INT": ["R20K", "M50I", "I60M", "A124T", "N134G", "A265V"], "RT-p51": ["D6S", "S123G", "T200A", "E248D", "A272P", "K275R", "A286V", "D291E", "I292V", "D312N", "M377L"], "RT-p66": ["D6S", "S123G", "T200A", "E248D", "A272P", "K275R", "A286V", "D291E", "I292V", "D312N", "M377L", "R461K", "K476Q", "Q520L"], "gp120": ["A2N", "N5K", "E21D", "E34K", "T35R", "N57D", "E64D", "N71K", "T78E", "T104S", "-106V", "-107N", "N108V", "-109T", "T110N", "-111N", "-112S", "-113M", "-123K", "-124G", "F131Y", "Q142K", "K150R", "I153V", "N159G", "S181T", "N201K", "K212R", "N261T", "S265T", "S278G", "D294E", "R307S", "E309K", "A318V", "E323N", "N327-", "-328N", "I332A", "N335P", "L341I", "W367Y", "-368S", "-372W", "-379S", "-382S", "V402T", "S433G", "D446N", "R448K"], "gp41": ["I4L", "A30V", "D109E", "E110Q", "I124V", "D129Q", "I130M", "K133Q", "N157S", "S165T", "N166R", "R214G", "L282I", "L290V", "H331N"], "nef": ["E18R", "R21Q", "R22Q", "A23T", "T28R", "P51S", "A56V", "D63E", "D98E", "I101V", "Y102W", "K105R", "H116N", "I133T", "Y135F", "E152A", "T157N", "D174E", "M182I", "K184R", "L198Q"], "p17": ["I60A", "E62M", "K69R", "L75F", "R76K", "K114Q", "A118T", "A119T", "S126-", "K127-", "V128-"], "p2": ["V7A"], "p24": ["A6V", "V91P", "M96L", "V191I", "T210S"], "p6": ["I14L", "S23P", "R33K", "-36N", "V39I"], "p7": ["R11K", "K41R"], "pro": ["L10I", "K14R"], "rev": ["V16I", "K32R", "P67S", "A68E", "P72S", "L73F", "S86R", "G96Q", "T100N", "V104G", "V108G", "K115E"], "tat": ["N7K", "N23S", "K24T", "Y32F", "L35V", "V36A", "N40K", "T58A", "P59S", "S62N", "I69V"], "vif": ["V31I", "K34E", "R47G", "D61E", "R63K", "D78E", "E134D", "T155E", "T159R", "Q178R", "P183H", "S186N"], "vpr": ["I61T", "V89A"], "vpu": ["V10A", "L33V", "R47T", "T63A", "D78-", "N80-"]}, "labels": {"aa": "INT: R20K, M50I, I60M, A124T, N134G, A265V; RT-p51: D6S, S123G, T200A, E248D, A272P, K275R, A286V, D291E, I292V, D312N, M377L; RT-p66: D6S, S123G, T200A, E248D, A272P, K275R, A286V, D291E, I292V, D312N, M377L, R461K, K476Q, Q520L; gp120: A2N, N5K, E21D, E34K, T35R, N57D, E64D, N71K, T78E, T104S, -106V, -107N, N108V, -109T, T110N, -111N, -112S, -113M, -123K, -124G, F131Y, Q142K, K150R, I153V, N159G, S181T, N201K, K212R, N261T, S265T, S278G, D294E, R307S, E309K, A318V, E323N, N327-, -328N, I332A, N335P, L341I, W367Y, -368S, -372W, -379S, -382S, V402T, S433G, D446N, R448K; gp41: I4L, A30V, D109E, E110Q, I124V, D129Q, I130M, K133Q, N157S, S165T, N166R, R214G, L282I, L290V, H331N; nef: E18R, R21Q, R22Q, A23T, T28R, P51S, A56V, D63E, D98E, I101V, Y102W, K105R, H116N, I133T, Y135F, E152A, T157N, D174E, M182I, K184R, L198Q; p17: I60A, E62M, K69R, L75F, R76K, K114Q, A118T, A119T, S126-, K127-, V128-; p2: V7A; p24: A6V, V91P, M96L, V191I, T210S; p6: I14L, S23P, R33K, -36N, V39I; p7: R11K, K41R; pro: L10I, K14R; rev: V16I, K32R, P67S, A68E, P72S, L73F, S86R, G96Q, T100N, V104G, V108G, K115E; tat: N7K, N23S, K24T, Y32F, L35V, V36A, N40K, T58A, P59S, S62N, I69V; vif: V31I, K34E, R47G, D61E, R63K, D78E, E134D, T155E, T159R, Q178R, P183H, S186N; vpr: I61T, V89A; vpu: V10A, L33V, R47T, T63A, D78-, N80-"}}}, {"name": "A1_NODE_0000022", "node_attrs": {"div": 0.10133999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "T771G", "G987A", "A1002G", "G1078C", "A1242G", "G1657A", "A2026G", "A4861G", "G4923A", "T5327C", "A5462C", "G5599A", "G5619A", "G5800A", "T5924C", "T6154C", "-6196T", "-6215A", "-6217G", "G6303A", "G6638A", "C6949T", "T7913C", "G8017C", "G8335A", "G8349A", "G8350A"], "gp120": ["P210L", "E262K"], "nef": ["G3N"], "p1": ["S9N"], "p24": ["V86I", "G116A"], "p6": ["K31N"], "rev": ["E57Q"], "tat": ["K29A", "R57G", "V80I"], "vif": ["K92R", "D113N"], "vpu": ["D81N"]}, "labels": {"aa": "gp120: P210L, E262K; nef: G3N; p1: S9N; p24: V86I, G116A; p6: K31N; rev: E57Q; tat: K29A, R57G, V80I; vif: K92R, D113N; vpu: D81N"}}, "children": [{"name": "A1_NODE_0000023", "node_attrs": {"div": 0.10616999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C606A", "C679A", "A1656C", "-1772C", "G1963A", "G2428A", "A2881G", "C2960T", "G3217A", "C3405T", "G3675A", "G3836A", "G4175A", "G4186A", "T4769C", "A4964G", "A5090G", "C5134A", "T5292C", "G5556A", "T5628G", "G5739A", "A5806C", "-5812G", "C5826T", "-6173A", "-6175C", "C6202T", "-6206A", "-6210T", "T6337C", "G6457T", "T6582G", "-6962A", "-6974A", "G6990A", "-6999C", "G7101A", "C7324A", "A7470G", "T7609C", "A7880G", "A8011C", "C8112T", "A8208G", "G8407A", "-8489A", "-8491T", "-8492C", "A8494C", "T8495C", "C8496-", "A8497-", "C8498-", "C8499-", "T8509C", "A8531T", "A8879G"], "INT": ["A21T"], "RT-p51": ["A437V"], "RT-p66": ["A437V", "G527E"], "gp120": ["-123K", "H280R"], "gp41": ["K56R", "I193V", "T270I", "N302S"], "nef": ["R22Q", "S52-"], "p1": ["N9H"], "p17": ["T115K"], "p24": ["Q50H", "G120S"], "rev": ["R14K", "I55L"], "vif": ["V31I", "R132S", "P183H"], "vpu": ["C7W"]}, "labels": {"aa": "INT: A21T; RT-p51: A437V; RT-p66: A437V, G527E; gp120: -123K, H280R; gp41: K56R, I193V, T270I, N302S; nef: R22Q, S52-; p1: N9H; p17: T115K; p24: Q50H, G120S; rev: R14K, I55L; vif: V31I, R132S, P183H; vpu: C7W"}}, "children": [{"name": "AF107771", "node_attrs": {"div": 0.14598, "accession": "AF107771", "clade_membership": {"value": "A1"}, "country": {"value": "SE"}, "date": {"value": 1995.0}, "Strain_name": {"value": "UGSE8131"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T200C", "G206A", "T213C", "T214G", "-215A", "-216A", "-217A", "G226T", "T227-", "G256A", "T258G", "A302T", "A380T", "A398G", "G413C", "G463A", "A480G", "A512G", "G518A", "G524A", "C531T", "T538C", "G542A", "T571A", "A653G", "C681G", "A683G", "G706A", "G738A", "G755A", "G770A", "C772T", "T774A", "A820G", "A833C", "A842T", "A881T", "G899A", "C930G", "T978A", "T979C", "C1063T", "G1089T", "G1090C", "A1101G", "A1133T", "G1139A", "G1199A", "G1271A", "A1292T", "T1334C", "C1342G", "C1385T", "G1404A", "T1444C", "G1498A", "C1550T", "G1553A", "C1613T", "A1670G", "A1694G", "A1701T", "C1721G", "T1722A", "T1724G", "G1725-", "G1726-", "G1727-", "A1728-", "T1729-", "G1730-", "A1731G", "G1769A", "G1773A", "A1776C", "G1777C", "G1778A", "G1779-", "A1780-", "A1781-", "C1782-", "A1783-", "G1784-", "C1787-", "C1826A", "A1839G", "T1895C", "C1957T", "A1968G", "C1985T", "T1987A", "T2113A", "G2215A", "A2293G", "G2294A", "C2299T", "A2300G", "C2301A", "A2304G", "A2374G", "G2380A", "A2470G", "C2503T", "G2509A", "C2605T", "A2617G", "T2638C", "G2682A", "G2683A", "A2713G", "A2734G", "A2738T", "C2739T", "A2750C", "T2996C", "G3004A", "A3124G", "A3142G", "A3151G", "G3166A", "G3168A", "A3192G", "G3208A", "A3283C", "A3292T", "T3399C", "C3475T", "T3551C", "G3630A", "T3757A", "T3946C", "G3952A", "A4064G", "G4195A", "C4210T", "G4243A", "A4293G", "A4433-", "A4441T", "A4498G", "C4501T", "A4535C", "T4537A", "G4622A", "A4692G", "A4693C", "T4703C", "A4776C", "G4779A", "A4806C", "A4816G", "C4826A", "A4966G", "C5056A", "G5128A", "T5182C", "C5237T", "T5245C", "A5246T", "A5285G", "T5331-", "G5332-", "C5333-", "C5334-", "A5335-", "A5336-", "C5337-", "A5338-", "C5339-", "A5340-", "G5341-", "C5342-", "A5343-", "G5344-", "A5345-", "A5346-", "T5347-", "A5348-", "G5349-", "G5350-", "T5371C", "G5385A", "T5415C", "G5418A", "G5444A", "G5450A", "A5453T", "C5462G", "C5479T", "A5494C", "T5568C", "A5575G", "T5611A", "C5612G", "G5652A", "T5688G", "A5689C", "G5706A", "C5707A", "T5708A", "A5711G", "T5731C", "T5787C", "G5805A", "G5858A", "C5884T", "T5899G", "T5911C", "T5944C", "C5958A", "C6004T", "A6020T", "A6023T", "G6046T", "C6067T", "C6109T", "A6131C", "-6165G", "A6168-", "-6174A", "T6193C", "A6195G", "T6196C", "-6198C", "-6199G", "-6201G", "-6203G", "-6204C", "-6205C", "-6207A", "-6208C", "-6209C", "-6211C", "-6213C", "-6214G", "-6216G", "G6217C", "-6218G", "-6219T", "-6220G", "-6225G", "A6234G", "G6253T", "C6278A", "T6289C", "C6317A", "T6328A", "T6334A", "A6338T", "G6339T", "T6340C", "T6460A", "A6461G", "G6463T", "A6478T", "C6482A", "A6489G", "A6525G", "G6547A", "G6569A", "C6632T", "G6640A", "A6647G", "A6654T", "A6682G", "C6726G", "C6729T", "A6730G", "C6752A", "G6779A", "A6788G", "C6797A", "C6800A", "A6805G", "C6810T", "C6824T", "A6840C", "C6937T", "C6951G", "-6955G", "-6956A", "-6957A", "-6958T", "-6959G", "-6961A", "-6963A", "A6965G", "-6966A", "-6967C", "A6971-", "-6975C", "-6976C", "-6977A", "-6979A", "-6980G", "-6981T", "-6982A", "-6983A", "C6984A", "A6985T", "A6986T", "T6988C", "-6994T", "-6998T", "C7020A", "G7058A", "T7059C", "T7071C", "A7089C", "A7093G", "A7100C", "G7106A", "A7107G", "A7138G", "A7148G", "A7149T", "T7150A", "G7152C", "A7162T", "C7164A", "T7222C", "A7241C", "G7269A", "A7274C", "G7289A", "A7313C", "A7315G", "G7317C", "C7328T", "C7411T", "G7428A", "C7463A", "C7511A", "C7546T", "A7573G", "C7574A", "A7589G", "A7590C", "C7597T", "G7608C", "G7628A", "A7629C", "G7631C", "G7633A", "A7700C", "G7702A", "G7720A", "A7721T", "C7742A", "A7744G", "C7747A", "C7755A", "A7798C", "A7852C", "T7877A", "T7888A", "T7921C", "C7926T", "A7936C", "A7938G", "G7947A", "T7950C", "A8032G", "C8047T", "C8051A", "T8064G", "C8095A", "T8097C", "G8105A", "A8130-", "C8131-", "A8132-", "G8133-", "G8134-", "G8135-", "G8136-", "G8137-", "T8138-", "G8139-", "G8140-", "G8141-", "A8143G", "C8167T", "G8180A", "G8181T", "A8194G", "T8218C", "C8296T", "C8311T", "C8323T", "C8351T", "A8364G", "A8367-", "G8368-", "C8369-", "A8370-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "G8376-", "G8377-", "A8378-", "G8393A", "C8412G", "C8413A", "T8414G", "A8425C", "A8484-", "T8485-", "-8487T", "-8488C", "-8490A", "G8508A", "G8522A", "T8595C", "T8636A", "A8663G", "C8702T", "G8717T", "C8831T", "C8840T", "T8843A", "A8846G", "C8849T", "G8870A", "A8901C", "G8902C", "G8905A", "C8913T", "A8915T", "C8928T", "A8929T", "A8930C", "T8947A", "C8948T", "A8954G", "G8955A", "C8960A", "C8964T", "A8969C", "A8980T", "T9068C", "T9073C", "-9108C", "A9134G", "T9176G", "T9179G", "T9180C", "C9181A"], "INT": ["T97A", "K173R", "I220-"], "RT-p51": ["D6E", "D67N", "T69D", "K70R", "G196E", "T215F", "K219Q", "R358K", "K366R", "E396D", "E399D", "V435A"], "RT-p66": ["D6E", "D67N", "T69D", "K70R", "G196E", "T215F", "K219Q", "R358K", "K366R", "E396D", "E399D", "V435A", "R512K"], "gp120": ["A2T", "T35K", "I56L", "N57Y", "E64D", "K93Q", "-106S", "-107V", "N108-", "T110-", "-124G", "K127R", "M133I", "Q142K", "Q155K", "N157-", "N159K", "S161K", "D202E", "K203D", "L210T", "K212R", "K224R", "E239K", "G240E", "L260F", "N261T", "S265E", "N267I", "A291G", "T292M", "Q300K", "E309K", "K312E", "Q315K", "Q316K", "T319I", "E323K", "N327-", "-328N", "K329T", "T366S", "-379N", "-382S", "P389Q", "V402T", "M406T", "Q412P", "R416Q", "E418R", "N432V", "S433T", "T437N", "I463L", "R472K", "K474Q", "E479K"], "gp41": ["I4L", "G5A", "L9F", "S42N", "L54M", "L70M", "L91I", "N96A", "S102T", "D109T", "E110Q", "K133Q", "N140Y", "Q147K", "D148E", "A151E", "S192T", "N195K", "T208I", "N212S", "G215D", "L216P", "L254R", "L265S", "A268T", "R276Q", "L277G", "G278-", "W279-", "E280-", "G281-", "G293I", "L340F"], "nef": ["S8-", "S9-", "I10-", "V11-", "I48-", "A56T", "D98E", "Q125H", "I168M", "S187P", "R188H", "L191F", "R196F", "F202Y", "D205N", "C206*"], "p17": ["K26N", "R43K", "S49G", "M61I", "P66S", "L68P", "F79Y", "Q116E", "S124N"], "p2": ["V7A"], "p24": ["V3M", "S14V", "L15M", "K30R", "Q67E", "L83T", "P111L", "I124V", "T171A", "E187D", "A204G", "G225S"], "p6": ["T8S", "I14M", "F15M", "G16-", "M17-", "R18G", "D32N", "R33P", "E34-", "Q35-"], "p7": ["R11K"], "pro": ["L10I", "K14R", "K57R"], "rev": ["I18T", "K30Q", "T62A", "P67S", "A68E", "L83I", "S86H", "Q95G", "G96T", "V97Q", "G98V", "R99S", "T100G", "Q101-", "V102-", "S103-", "V104-", "P107S", "G111D", "N116D"], "tat": ["C25Y", "Y26F", "A29R", "N40H", "N67D", "P73S", "Q76P", "T77A", "S81P"], "vif": ["K36A", "I64L", "V65I", "T74P", "K77R", "H80Q", "Q127R", "T157K", "R181K"], "vpr": ["H45Y", "N48Y", "I61V", "C76-", "Q77-", "H78-", "S79-", "R80-", "I81-", "G82-"], "vpu": ["I28L", "L34K", "K35R", "V65I", "M67L", "-79Y", "N80D", "N81L"]}, "labels": {"aa": "INT: T97A, K173R, I220-; RT-p51: D6E, D67N, T69D, K70R, G196E, T215F, K219Q, R358K, K366R, E396D, E399D, V435A; RT-p66: D6E, D67N, T69D, K70R, G196E, T215F, K219Q, R358K, K366R, E396D, E399D, V435A, R512K; gp120: A2T, T35K, I56L, N57Y, E64D, K93Q, -106S, -107V, N108-, T110-, -124G, K127R, M133I, Q142K, Q155K, N157-, N159K, S161K, D202E, K203D, L210T, K212R, K224R, E239K, G240E, L260F, N261T, S265E, N267I, A291G, T292M, Q300K, E309K, K312E, Q315K, Q316K, T319I, E323K, N327-, -328N, K329T, T366S, -379N, -382S, P389Q, V402T, M406T, Q412P, R416Q, E418R, N432V, S433T, T437N, I463L, R472K, K474Q, E479K; gp41: I4L, G5A, L9F, S42N, L54M, L70M, L91I, N96A, S102T, D109T, E110Q, K133Q, N140Y, Q147K, D148E, A151E, S192T, N195K, T208I, N212S, G215D, L216P, L254R, L265S, A268T, R276Q, L277G, G278-, W279-, E280-, G281-, G293I, L340F; nef: S8-, S9-, I10-, V11-, I48-, A56T, D98E, Q125H, I168M, S187P, R188H, L191F, R196F, F202Y, D205N, C206*; p17: K26N, R43K, S49G, M61I, P66S, L68P, F79Y, Q116E, S124N; p2: V7A; p24: V3M, S14V, L15M, K30R, Q67E, L83T, P111L, I124V, T171A, E187D, A204G, G225S; p6: T8S, I14M, F15M, G16-, M17-, R18G, D32N, R33P, E34-, Q35-; p7: R11K; pro: L10I, K14R, K57R; rev: I18T, K30Q, T62A, P67S, A68E, L83I, S86H, Q95G, G96T, V97Q, G98V, R99S, T100G, Q101-, V102-, S103-, V104-, P107S, G111D, N116D; tat: C25Y, Y26F, A29R, N40H, N67D, P73S, Q76P, T77A, S81P; vif: K36A, I64L, V65I, T74P, K77R, H80Q, Q127R, T157K, R181K; vpr: H45Y, N48Y, I61V, C76-, Q77-, H78-, S79-, R80-, I81-, G82-; vpu: I28L, L34K, K35R, V65I, M67L, -79Y, N80D, N81L"}}}, {"name": "AF484493", "node_attrs": {"div": 0.14354, "accession": "AF484493", "clade_membership": {"value": "A1"}, "country": {"value": "UG"}, "date": {"value": 1999.0}, "Strain_name": {"value": "99UGG03379"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "G394A", "T422C", "A423C", "C426T", "C496G", "A520G", "A540C", "G608A", "G612C", "T614C", "A619G", "C707T", "G716T", "G762A", "T763C", "G771A", "C772A", "C773T", "G803A", "G822A", "C823A", "A863C", "A881C", "T944A", "T978C", "T1004A", "G1019A", "G1089A", "T1148C", "C1243T", "T1244C", "A1274G", "T1439C", "A1448C", "G1474A", "A1492C", "G1499A", "C1517T", "C1535T", "G1586A", "A1602T", "A1607G", "A1614T", "A1619G", "T1682C", "A1740C", "C1744T", "A1781C", "-1785A", "-1786A", "T1825C", "C1831T", "A1857G", "A1920G", "G1981A", "A1982G", "T1986C", "T2113C", "G2224A", "C2263T", "A2462G", "G2463A", "C2533T", "G2566A", "T2612G", "A2630G", "A2699G", "A2704G", "G2710A", "C2715A", "T2716A", "A2828C", "C2848T", "G2878A", "G2909C", "G2914A", "G2921A", "A2975C", "G2986A", "A2995G", "G3010A", "G3094A", "C3100T", "A3120T", "G3221A", "T3222C", "A3230G", "A3264G", "A3340G", "A3522G", "C3542T", "T3544C", "C3577T", "A3619C", "A3622G", "T3644A", "G3667A", "C3668T", "A3739G", "A3744G", "G3772A", "C3857T", "C3922T", "G3925A", "A3955G", "G3989A", "C4015T", "A4078G", "A4084G", "T4191A", "G4264A", "A4315G", "G4366A", "A4407G", "A4432T", "G4553A", "C4826T", "T4979C", "A4995G", "T5003C", "G5036A", "C5041T", "A5058G", "G5086A", "A5094G", "A5110G", "G5167T", "G5170A", "T5179A", "T5197G", "A5233G", "C5242T", "C5248T", "A5287G", "A5355C", "G5359A", "A5396G", "A5421G", "C5454T", "T5457C", "A5461G", "C5479A", "A5495C", "A5499G", "A5537C", "G5538C", "A5547C", "A5548C", "A5557G", "A5563G", "A5564G", "A5599T", "T5611C", "C5612A", "T5613A", "G5668A", "G5673A", "T5704G", "T5781C", "T5791G", "C5792A", "A5793C", "A5794G", "C5795A", "C5797T", "T5799A", "A5800T", "T5801C", "T5802C", "G5803T", "A5804T", "G5809-", "G5810-", "G5811-", "-5813T", "-5814G", "-5815G", "-5816A", "-5817A", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824A", "C5851T", "G5856A", "T5860A", "G5861A", "C5862A", "A5863C", "G5864C", "A5866C", "A5867C", "A5868C", "C5869T", "T5878C", "T5881G", "T5911A", "A5916C", "G5917T", 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"G9132A"], "INT": ["M50I", "I60M", "V72I", "F139Y", "K211R", "K219N", "V260I"], "RT-p51": ["S123D", "S173A", "I179V", "I202V", "A207E", "K245Q", "A272P", "V276I", "T294P", "Y342F", "V376T", "S379G", "K390R"], "RT-p66": ["S123D", "S173A", "I179V", "I202V", "A207E", "K245Q", "A272P", "V276I", "T294P", "Y342F", "V376T", "S379G", "K390R", "K476R", "H483Y", "L517I", "K550R"], "gp120": ["S1N", "A3N", "E4H", "N5P", "D19E", "E21A", "Y33H", "E34D", "V37A", "E59V", "E64K", "T78E", "K89Q", "N102E", "T104N", "D105H", "-106T", "-107T", "-109N", "-111N", "-112D", "-113I", "-114N", "-115S", "-116T", "-117V", "-118N", "-119M", "-124E", "M126I", "I156M", "N157D", "N159S", "S161T", "S181T", "V242I", "N261V", "P263S", "S265P", "N267K", "T269I", "A288T", "T292G", "G293D", "D294V", "E309D", "Q315H", "E323-", "Y324Q", "W325Y", "-326W", "-328S", "K329S", "T330I", "S365N", "W367Y", "-368T", "-371T", "-372D", "-373S", "-374I", "-375E", "-377S", "-379D", "-382P", "N383D", "D384A", "T385N", "M406I", "R416K", 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"I84L", "P85Q"], "vpu": ["S2Q", "V21I", "L33V", "T63L", "-69N", "-70Y", "-71D", "-72L", "-73G", "-79D"]}, "labels": {"aa": "INT: M50I, I60M, V72I, F139Y, K211R, K219N, V260I; RT-p51: S123D, S173A, I179V, I202V, A207E, K245Q, A272P, V276I, T294P, Y342F, V376T, S379G, K390R; RT-p66: S123D, S173A, I179V, I202V, A207E, K245Q, A272P, V276I, T294P, Y342F, V376T, S379G, K390R, K476R, H483Y, L517I, K550R; gp120: S1N, A3N, E4H, N5P, D19E, E21A, Y33H, E34D, V37A, E59V, E64K, T78E, K89Q, N102E, T104N, D105H, -106T, -107T, -109N, -111N, -112D, -113I, -114N, -115S, -116T, -117V, -118N, -119M, -124E, M126I, I156M, N157D, N159S, S161T, S181T, V242I, N261V, P263S, S265P, N267K, T269I, A288T, T292G, G293D, D294V, E309D, Q315H, E323-, Y324Q, W325Y, -326W, -328S, K329S, T330I, S365N, W367Y, -368T, -371T, -372D, -373S, -374I, -375E, -377S, -379D, -382P, N383D, D384A, T385N, M406I, R416K, N434T, N435K, T436S, K462Q, I463V, L466I; gp41: F8L, H53Q, S101A, D109G, D129N, K154Q, N157S, S165T, N166K, L181I, F188L, R214G, G220E, I222T, G230D, D232T, I264V, R276H, L277S, G281R, K297R, F304Y, A310T, I321R, I325L, I329L, L330I; nef: E15R, A23T, T28E, V33A, N49-, W57R, A60E, E65-, H116N, D151A, K155E, A156D, E158G, R196Q; p17: R20Q, A54G, E62G, K69Q, D93H, K95R, K127N; p24: V11T, S14N, A31N, D71E, M96I, T171V; p6: I21L, A22V, E34D, -36N, S38P, V39S, L49P, S51L; p7: R3K, Q9P, M46L, T50S; pro: K20R, K41R, I62V, L63P; rev: S8P, E11A, R17G, K32R, S34T, R50N, H82R, S86C, R99K, V104G, V108A; tat: N7S, N23S, L35I, N40T, Q54P, T58P, S61G, K63G, I80D, E85K, S87P; vif: T137A, A152V, R158G, R167K, T170A, N175S; vpr: E21D, D25E, I61M, I84L, P85Q; vpu: S2Q, V21I, L33V, T63L, -69N, -70Y, -71D, -72L, -73G, -79D"}}}]}, {"name": "A1_NODE_0000024", "node_attrs": {"div": 0.10749999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A480G", "G518A", "G562A", "T774G", "T1329A", "A1451G", "G1486A", "G1743A", "A1770-", "A1771-", "G2156A", "G2686A", "T2803G", "A2842G", "A2969G", "G3162A", "A3251G", "C3542T", "A3670G", "G3834A", "G3877A", "A4176G", "G4195A", "G4774A", "A5065G", "G5359C", "A5461G", "A5621T", "G5805C", "G5954A", "A6186T", "-6198A", "-6955G", "A6965-", "G7094A", "G7190A", "A7533G", "C7561T", "A7676G", "G7677A", "C7690A", "A7818G", "A7936G", "A8032G", "C8033A", "G8114T", "T8196A", "A8264G", "C8294A", "A8364C", "G8388A", "A8402G", "G8537T", "G8870A", "T8887A", "C8904A", "A8917G", "G8923T"], "INT": ["R20K", "N134G"], "RT-p51": ["V21I", "I292V", "R356K", "T386A"], "RT-p66": ["V21I", "I292V", "R356K", "T386A", "H483Y"], "gp120": ["D105N", "-113N", "E204K", "R243I", "D446N"], "gp41": ["K77R", "S125D", "K172R", "L244I", "V271L", "I298N", "I321V", "H331N"], "nef": ["S8R", "V16I", "I20M", "M182R", "K192R", "R194L"], "p17": ["S49G", "M61L", "R76K"], "p24": ["S14A", "L15V", "S200T"], "p6": ["D32-"], "p7": ["R7K"], "rev": ["K30E", "T62D", "C89I"], "tat": ["Q76R"], "vif": ["R63K", "K160R"], "vpr": ["T63I"], "vpu": ["V65I", "E66D"]}, "labels": {"aa": "INT: R20K, N134G; RT-p51: V21I, I292V, R356K, T386A; RT-p66: V21I, I292V, R356K, T386A, H483Y; gp120: D105N, -113N, E204K, R243I, D446N; gp41: K77R, S125D, K172R, L244I, V271L, I298N, I321V, H331N; nef: S8R, V16I, I20M, M182R, K192R, R194L; p17: S49G, M61L, R76K; p24: S14A, L15V, S200T; p6: D32-; p7: R7K; rev: K30E, T62D, C89I; tat: Q76R; vif: R63K, K160R; vpr: T63I; vpu: V65I, E66D"}}, "children": [{"name": "KT022375", "node_attrs": {"div": 0.16080999999999998, "accession": "KT022375", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05KE643439V4"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "C362T", "A398G", "G452A", "A488G", "A503C", "A516T", "G519C", "A521G", "C531T", "G534A", "C535A", "A549T", "C558A", "A563G", "T571A", "T614G", "A618C", "A619T", "A631G", "A644G", "A654T", "A665G", "G686A", "G785A", "G803A", "A836G", "T890C", "A965C", "G1002A", "A1025G", "T1100C", "C1136T", 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"G6076A", "G6079A", "T6100C", "C6148T", "T6160A", "T6163C", "-6165C", "A6168-", "T6180C", "C6181T", "C6183A", "T6184A", "C6187T", "C6189T", "A6197G", "-6199G", "-6201C", "A6212-", "-6216A", "-6218T", "-6219T", "-6220T", "A6223C", "-6225A", "A6230C", "G6232A", "A6276C", "A6303G", "A6311G", "T6322A", "A6327G", "A6335G", "G6336A", "C6370T", "C6375A", "C6427T", "A6450G", "G6457T", "G6463T", "G6464A", "T6472C", "G6481A", "C6482A", "A6489C", "G6490T", "G6547A", "T6562C", "A6565G", "T6610C", "A6635G", "C6636T", "A6648G", "A6649C", "T6652C", "A6654G", "T6655A", "C6660T", "C6665G", "C6666T", "A6669G", "T6676G", "A6684C", "G6716A", "G6742A", "T6745C", "C6752G", "A6765C", "T6766G", "G6771A", "A6773G", "T6787A", "A6788G", "A6789G", "T6793A", "T6794C", "A6796T", "G6803A", "C6807T", "C6824-", "A6825-", "C6826-", "G6828A", "G6829T", "-6830T", "-6831G", "-6832G", "-6833A", "-6834A", "-6835C", "A6837C", "C6838A", "A6840C", "T6849G", "T6853C", "C6855A", "A6858G", "A6881G", "T6898C", "A6913G", "G6935A", "G6936A", "C6937A", "T6949C", "A6960-", "T6964-", "A6971-", "-6977C", "A6978C", "-6979A", "-6980C", "-6981A", "-6982G", "-6983T", "T6988C", "A6989C", "G6990A", "-6994G", "G6997A", "-6998G", "-6999A", "A7000C", "A7005G", "C7006A", "C7008A", "A7010C", "G7033A", "A7037C", "T7045C", "A7046C", "G7054A", "T7059C", "C7087A", "A7089C", "T7095A", "A7096T", "G7102T", "A7107T", "A7132G", "T7150C", "T7153G", "C7170T", "A7237G", "C7250A", "G7256A", "G7269A", "T7308C", "T7309A", "G7310C", "G7311T", "A7312T", "A7313G", "T7314C", "A7315T", "G7322T", "C7327T", "G7343A", "A7376G", "A7396G", "T7462A", "C7463T", "A7470G", "G7477A", "A7522G", "G7534A", "T7604G", "T7622A", "T7625C", "C7627G", "A7644G", "C7684T", "G7688C", "T7692C", "A7700G", "A7706C", "A7713C", "C7747G", "A7782G", "G7790A", "T7796A", "C7843A", "A7852C", "T7877G", "A7880T", "A7938G", "T7948A", "A7964G", "G7965A", "A7989C", "G7997A", "A7998C", "G8005A", "T8008A", "C8009A", "C8017G", "G8050A", "C8062T", "C8065T", "T8091G", "C8104A", "T8113C", "T8122C", "C8123T", "A8146G", "T8155C", "G8159A", "G8160A", "T8171G", "T8176C", "G8184A", "G8212A", "T8213C", "G8255A", "G8268C", "A8273G", "A8276C", "T8290C", "C8293T", "A8314G", "T8321G", "T8322C", "C8336T", "A8349G", "A8350G", "C8369T", "C8382T", "G8387A", "T8411C", "A8424G", "A8426G", "T8431C", "G8433A", "T8444C", "A8459G", "A8465G", "C8477T", "T8483C", "T8505A", "G8506A", "C8507T", "G8522A", "A8531C", "G8588A", "G8590C", "T8595G", "T8610C", "T8636A", "A8663G", "C8687T", "A8701T", "G8717A", "A8739G", "A8742C", "T8795G", "C8812A", "T8813C", "G8816A", "A8834C", "A8837G", "G8873C", "A8880G", "C8881T", "A8882G", "C8906A", "A8922T", "A8954G", "G8955A", "C8960A", "G8994A"], "INT": ["R14K", "Q216H"], "RT-p51": ["K43N", "T135I", "I142T", "I178L", "I179T", "T200A", "S211N", "K245E", "A272P", "D291E", "F346H", "K357Q", "M377T", "K395R", "V435A"], "RT-p66": ["K43N", "T135I", "I142T", "I178L", "I179T", "T200A", "S211N", "K245E", "A272P", "D291E", "F346H", "K357Q", "M377T", "K395R", "V435A", "K465R", "V467I", "E514D"], "gp120": ["A3V", "E4D", "N5K", "E34N", "T35R", "V37A", "N52D", "N57P", "N102K", "-106A", "-107K", "-109E", "-111K", "-112F", "-114E", "M126L", "K141T", "K150R", "I153V", "N159D", "N160-", "S161-", "T174K", "K199R", "K203N", "L210T", "K212T", "G240E", "N261V", "N267R", "T269I", "P271V", "N272S", "N274K", "K277T", "H280R", "A288T", "D294A", "Q300E", "N304T", "S306N", "R307G", "N311K", "K312G", "V317I", "A318V", "E323K", "-328T", "K329T", "I332S", "T334N", "N335S", "I343V", "G361K", "-368P", "-369Q", "-370S", "-379H", "-382D", "D384G", "T385N", "I386L", "I395L", "M398L", "V402A", "Q412P", "V414N", "R416S", "E418V", "S433T", "N434G", "T436N", "T439I", "L466I", "V468I", "R472K"], "gp41": ["V2A", "G3L", "I4A", "V7F", "A14T", "T25A", "H53Q", "K56R", "S101A", "S107T", "Y108Q", "N114S", "D129Q", "I130T", "K133E", "I135L", "E137A", "D148E", "N160S", "D163N", "S165T", "S192A", "I193L", "N212S", "R221E", "Q229P", "D232T", "F263C", "G286K", "L290V", "R294Q", "F304L", "V318I", "G322A", "R324G", "I325L", "L340A"], "nef": ["N3G", "P14S", "G29E", "V30G", "G31A", "A32R", "V33A", "-53N", "-54V", "C55-", "A56-", "E65D", "G83A", "L85V", "F90L", "D98E", "Y120F", "I133V", "D151E", "T157N", "E177D", "T180V", "R182K", "R196Q", "D205N", "C206*"], "p1": ["K10R"], "p17": ["V7I", "E62Q", "P66S", "A67N", "T72S", "L75I", "F79Y", "D93E", "K95L", "E99G", "I107L"], "p2": ["-10V", "I13-"], "p24": ["V91I", "K154R", "E180D", "G183N", "A207P"], "p6": ["I14L", "F15L", "M17T", "I21V", "A22I", "P25L", "-26K", "K27Q", "Q28G", "Q30P", "N31I", "R33-", "E34-", "Q35-", "P37-", "S38-", "V39-", "Q52*"], "p7": ["M1L", "I12M", "-13I"], "pro": ["T12I", "G16E", "K70R"], "rev": ["E11G", "V16I", "S34T", "K39R", "R50N", "D53N", "S54K", "Q57E", "A68T", "P72S", "L73F", "I89L", "S92L", "T100A", "S103P", "V104E", "V108G", "N116K"], "tat": ["Y26F", "N40S", "T58P", "P59S", "S62N", "P68T", "T77A", "I80D", "E86K"], "vif": ["K33R", "K36S", "V51T", "H73Q", "R92G", "I124L", "E134D", "T137A", "T159A", "R167K", "G185E", "M189K"], "vpr": ["N16Q", "H45Q", "Q77R", "D91N", "G94S"], "vpu": ["E5V", "A8S", "V10I", "I13V", "A19V", "T24I", "G27I", "Y30C", "K31R", "L34Q", "R37K", "K38R", "I43L", "R47G", "E48Q", "D78-", "N80-", "N81-"]}, "labels": {"aa": "INT: R14K, Q216H; RT-p51: K43N, T135I, I142T, I178L, I179T, T200A, S211N, K245E, A272P, D291E, F346H, K357Q, M377T, K395R, V435A; RT-p66: K43N, T135I, I142T, I178L, I179T, T200A, S211N, K245E, A272P, D291E, F346H, K357Q, M377T, K395R, V435A, K465R, V467I, E514D; gp120: A3V, E4D, N5K, E34N, T35R, V37A, N52D, N57P, N102K, -106A, -107K, -109E, -111K, -112F, -114E, M126L, K141T, K150R, I153V, N159D, N160-, S161-, T174K, K199R, K203N, L210T, K212T, G240E, N261V, N267R, T269I, P271V, N272S, N274K, K277T, H280R, A288T, D294A, Q300E, N304T, S306N, R307G, N311K, K312G, V317I, A318V, E323K, -328T, K329T, I332S, T334N, N335S, I343V, G361K, -368P, -369Q, -370S, -379H, -382D, D384G, T385N, I386L, I395L, M398L, V402A, Q412P, V414N, R416S, E418V, S433T, N434G, T436N, T439I, L466I, V468I, R472K; gp41: V2A, G3L, I4A, V7F, A14T, T25A, H53Q, K56R, S101A, S107T, Y108Q, N114S, D129Q, I130T, K133E, I135L, E137A, D148E, N160S, D163N, S165T, S192A, I193L, N212S, R221E, Q229P, D232T, F263C, G286K, L290V, R294Q, F304L, V318I, G322A, R324G, I325L, L340A; nef: N3G, P14S, G29E, V30G, G31A, A32R, V33A, -53N, -54V, C55-, A56-, E65D, G83A, L85V, F90L, D98E, Y120F, I133V, D151E, T157N, E177D, T180V, R182K, R196Q, D205N, C206*; p1: K10R; p17: V7I, E62Q, P66S, A67N, T72S, L75I, F79Y, D93E, K95L, E99G, I107L; p2: -10V, I13-; p24: V91I, K154R, E180D, G183N, A207P; p6: I14L, F15L, M17T, I21V, A22I, P25L, -26K, K27Q, Q28G, Q30P, N31I, R33-, E34-, Q35-, P37-, S38-, V39-, Q52*; p7: M1L, I12M, -13I; pro: T12I, G16E, K70R; rev: E11G, V16I, S34T, K39R, R50N, D53N, S54K, Q57E, A68T, P72S, L73F, I89L, S92L, T100A, S103P, V104E, V108G, N116K; tat: Y26F, N40S, T58P, P59S, S62N, P68T, T77A, I80D, E86K; vif: K33R, K36S, V51T, H73Q, R92G, I124L, E134D, T137A, T159A, R167K, G185E, M189K; vpr: N16Q, H45Q, Q77R, D91N, G94S; vpu: E5V, A8S, V10I, I13V, A19V, T24I, G27I, Y30C, K31R, L34Q, R37K, K38R, I43L, R47G, E48Q, D78-, N80-, N81-"}}}, {"name": "A1_NODE_0000025", "node_attrs": {"div": 0.13627999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T95G", "C96T", "G119T", "T227A", "A359G", "C426T", "A540C", "A611T", "T641C", "C657-", "A658-", "C731T", "A752G", "A759T", "G761T", "G791A", "C827T", "G899A", "C1061T", "A1067G", "A1074G", "G1090C", "A1142G", "A1193G", "A1196G", "G1350A", "G1394A", "G1404A", "A1412G", "T1444C", "G1586A", "G1664A", "T1682C", "A1736-", "C1745-", "-1746G", "-1748T", "T1749C", "A1774G", "-1785A", "-1786A", "C1903T", "T1986C", "C2326T", "T2365C", "A2386G", "T2449C", "G2463A", "A2500T", "G2509A", "G2524A", "T2527C", "T2536C", "A2579T", "G2602T", "A2699G", "G2710A", "C2715A", "T2716G", "C2728A", "G2755A", "T2873C", "G2878A", "G2914A", "A2975C", "G3094A", "A3151G", "A3165G", "T3170G", "T3207C", "G3211A", "G3221A", "C3223G", "T3253C", "A3264G", "G3398A", "T3412C", "G3448A", "G3463A", "A3481T", "G3675C", "A3685G", "A3727G", "C3889T", "C3892T", "A3979G", "G4060A", "A4084G", "C4180T", "C4181A", "C4534T", "A4546C", "A4625G", "A4650C", "T4656A", "T4697A", "T4702C", "G4723A", "A4735G", "G4786A", "C4826A", "T4868C", "T4938A", "G4968A", "G4975T", "A4980T", "A4994G", "T5003C", "A5021G", "A5048G", "C5062G", "G5075A", "G5087A", "A5093G", "G5128A", "A5136C", "G5143A", "T5203C", "T5371G", "T5391C", "C5412T", "T5439A", "C5479T", "C5496A", "T5600C", "T5604G", "C5612T", "G5620T", "C5658A", "T5670A", "A5689C", "G5700A", "G5706A", "A5709G", "T5781G", "-5812G", "G5856A", "T5986C", "G6028A", "G6044A", "A6073G", "C6097T", "T6151C", "T6155C", "T6160C", "-6169T", "A6185G", "T6193C", "-6203G", "-6205G", "-6207C", "-6208A", "-6209A", "-6210T", "-6211G", "-6213C", "-6214A", "A6215C", "-6216T", "A6221-", "A6222-", "G6253A", "C6263A", "A6318C", "T6328A", "G6345T", "A6346C", "A6379G", "T6395A", "C6396G", "C6483T", "G6578A", "A6631G", "C6636A", "A6647C", "A6685G", "G6693A", "G6743A", "C6797A", "A6809G", "C6810A", "C6812A", "A6821G", "C6826T", "C6859A", "T6860C", "G6871A", "T6932A", "-6956T", "-6958T", "-6959A", "-6962A", "-6963A", "-6969G", "-6972C", "-6976T", "-6977G", "A6996-", "T7015A", "A7046G", "G7048A", "G7072A", "C7114T", "A7120G", "A7123G", "G7152A", "A7162T", "C7164-", "G7197A", "T7217C", "A7219G", "G7307A", "A7339G", "A7348C", "A7372C", "A7373G", "A7456G", "C7463A", "T7466C", "A7525T", "G7628A", "A7691G", "C7703T", "G7735A", "A7773G", "T7774C", "T7876C", "A7942C", "G7947A", "T7950C", "G7962A", "A7989G", "G7992A", "G8019A", "C8037T", "T8113A", "A8143G", "G8159T", "T8182C", "C8183A", "A8193C", "A8194C", "T8209C", "C8232T", "A8269G", "A8288T", "T8348G", "A8370-", "T8390C", "C8406A", "A8455C", "A8456C", "G8597T", "C8607T", "A8608T", "G8738T", "T8786A", "G8822A", "C8828T", "C8831T", "T8914G", "C8927T", "A8930T", "A8969G", "G8977A", "A8978C", "C8979A", "A8980G", "C9078A", "T9095G", "-9108A", "A9134T", "T9180G", "C9181T"], "INT": ["Q136K", "R284G"], "RT-p51": ["S123N", "S162C", "E169D", "I202V", "A207E", "S211R", "T294P", "K357R", "S359A", "V371A", "V376M", "K390R", "V435I"], "RT-p66": ["S123N", "S162C", "E169D", "I202V", "A207E", "S211R", "T294P", "K357R", "S359A", "V371A", "V376M", "K390R", "V435I", "G527A"], "gp120": ["S1N", "E34K", "E64K", "-109V", "-111V", "-115S", "-117E", "M133I", "L137I", "Q155P", "N158K", "R164I", "N201K", "V242I", "D297N", "Q315K", "T319E", "Q320K", "N335K", "S336P", "S360T", "-368Y", "-369N", "-371T", "-375D", "E381-", "M398V", "M406I", "V414I", "S433-", "N435T", "T436S", "T437N", "R448K"], "gp41": ["V2I", "I24V", "L54M", "R74S", "D109N", "I130V", "N157S", "G215D", "L216P", "G220E", "Q229R", "G230D", "S239N", "A245V", "G286W", "K297T", "A310V", "I329F"], "nef": ["E38A", "L85F", "H89F", "R188S", "L191R"], "p17": ["K69Q", "Q108K"], "p2": ["V7A"], "p24": ["M10F", "I115V", "G120A", "A207T", "G225S"], "pro": ["L63H"], "rev": ["K32Q", "R99G", "S112Q", "K115N", "N116Q"], "tat": ["N40K", "Q78P", "S81P", "E85K"], "vif": ["N22H", "L24I", "F39S", "K50R", "R67K", "H80Q", "S118T", "V128I", "R132C", "T159S", "R181K", "S186N"], "vpr": ["Q11P", "V89G", "S96P"], "vpu": ["S2L", "L4P", "E5L", "I28L", "D58E", "-69D", "-77G", "-79D"]}, "labels": {"aa": "INT: Q136K, R284G; RT-p51: S123N, S162C, E169D, I202V, A207E, S211R, T294P, K357R, S359A, V371A, V376M, K390R, V435I; RT-p66: S123N, S162C, E169D, I202V, A207E, S211R, T294P, K357R, S359A, V371A, V376M, K390R, V435I, G527A; gp120: S1N, E34K, E64K, -109V, -111V, -115S, -117E, M133I, L137I, Q155P, N158K, R164I, N201K, V242I, D297N, Q315K, T319E, Q320K, N335K, S336P, S360T, -368Y, -369N, -371T, -375D, E381-, M398V, M406I, V414I, S433-, N435T, T436S, T437N, R448K; gp41: V2I, I24V, L54M, R74S, D109N, I130V, N157S, G215D, L216P, G220E, Q229R, G230D, S239N, A245V, G286W, K297T, A310V, I329F; nef: E38A, L85F, H89F, R188S, L191R; p17: K69Q, Q108K; p2: V7A; p24: M10F, I115V, G120A, A207T, G225S; pro: L63H; rev: K32Q, R99G, S112Q, K115N, N116Q; tat: N40K, Q78P, S81P, E85K; vif: N22H, L24I, F39S, K50R, R67K, H80Q, S118T, V128I, R132C, T159S, R181K, S186N; vpr: Q11P, V89G, S96P; vpu: S2L, L4P, E5L, I28L, D58E, -69D, -77G, -79D"}}, "children": [{"name": "KX232594", "node_attrs": {"div": 0.17629999999999998, "accession": "KX232594", "clade_membership": {"value": "A1"}, "country": {"value": "PK"}, "date": {"value": 2014.0}, "Strain_name": {"value": "PK001"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G2A", "C6T", "T7A", "T10G", "G15C", "C17T", "A19C", "G20T", "C23G", "-24T", "A26C", "C28A", "C29A", "G33A", "A34T", "C36A", "G49T", "G95A", "A222G", "A263G", "A302T", "A428G", "C471G", "T486G", "A516T", "A521T", "C528A", "A529G", "A653G", "-657A", "-658G", "A675C", "C707T", "G709A", "G716A", "G747A", "A758C", "G803A", "A815G", "A833C", "A860G", "T892C", "C974T", "A987G", "T992G", "G1019A", "C1091T", "A1093C", "G1173A", "T1174C", "A1205G", "A1265C", "G1271T", "A1289G", "T1439C", "G1451T", "C1490A", "C1517T", "C1536A", "G1543A", "T1559C", "C1615T", "A1622G", "G1687A", "C1693T", "C1706T", "A1709G", "C1714A", "G1734-", "A1735-", "T1741A", "A1742G", "-1745A", "-1747A", "G1766A", "A1781C", "C1787T", "G1794A", "A1920G", "C1957T", "C1985G", "A2002G", "G2008A", "T2080C", "T2086C", "A2140G", "A2152C", "A2223G", "T2257C", "G2332A", "C2434T", "C2499T", "T2631C", "C2644T", "A2693G", "A2713G", "G2727A", "A2752G", "G2803A", "A2829T", "C2831T", "T2863C", "G3019A", "C3031G", "A3043G", "A3097G", "A3190G", "C3201T", "T3225C", "G3226A", "A3235T", "A3279G", "A3283C", "A3334C", "A3340G", "T3343C", "G3385A", "A3435G", "G3508C", "T3517C", "T3544C", "A3607G", "C3628T", "C3649T", "A3651G", "G3664A", "G3769A", "A3808C", "T3829C", "G3846A", "A3866G", "C3908T", "C3943T", "G3989A", "A4033G", "T4039C", "T4075C", "C4076A", "T4085C", "G4109A", "G4112A", "C4132T", "T4151G", "T4153G", "T4216C", "A4246G", "G4276A", "A4391T", "T4405C", "A4432T", "A4498C", "G4522A", "G4539A", "T4540C", "G4637A", "C4652T", "C4665T", "A4677G", "G4695A", "G4696A", "A4697G", "G4708A", "A4723C", "A4751G", "C4820T", "C4871T", "A4923C", "C4925A", "T4975C", "A5063T", "G5066A", "G5123A", "G5212A", "C5237T", "T5260C", "C5333T", "C5384T", "C5397T", "G5444A", "A5446C", "G5448A", "G5463A", "T5483C", "G5545C", "G5561A", "G5566A", "A5581C", "T5602C", "T5606G", "T5611C", "T5620C", "T5621C", "A5622T", "C5659T", "A5699G", "T5704A", "C5707T", "A5711G", "G5737A", "G5739A", "A5751G", "T5778C", "T5791G", "A5793C", "C5833T", "A5865G", "C5869A", "G5902A", "G5917T", "T5964C", "C5974A", "C5989T", "G6029A", "A6030C", "A6086T", "A6092G", "C6101A", "A6159G", "-6165A", "-6167A", "T6184G", "C6190T", "A6191C", "A6192C", "-6199T", "-6201G", "-6204T", "-6206C", "A6223-", "G6224-", "A6226-", "G6227-", "T6246A", "C6278A", "A6279G", "A6326G", "A6328G", "G6336A", "A6376G", "G6392A", "G6425A", "C6446T", "G6466T", "G6481T", "C6487T", "T6562C", "A6573G", "G6575A", "A6583G", "C6641A", "A6646G", "C6647T", "A6648C", "A6689G", "A6693C", "A6781T", "A6790C", "A6798G", "C6824T", "A6841T", "C6937A", "-6957A", "-6961A", "-6968G", "-6970A", "-6973G", "-6974A", "-6975C", "-6979G", "-6980G", "-6981G", "-6982A", "-6983A", "-6994G", "-6996G", "-6998T", "-6999C", "A7037G", "A7089C", "A7093G", "G7147A", "A7155C", "C7156A", "A7158G", "A7163-", "T7165-", "A7241C", "G7269A", "G7270A", "A7313T", "A7315T", "G7322T", "C7348T", "T7622A", "G7633T", "C7651T", "C7678A", "A7689G", "A7690T", "T7692A", "A7701G", "C7747G", "A7817C", "T7888A", "G7918A", "T7921C", "C7932T", "A7938G", "G8005C", "A8014G", "T8028C", "G8032T", "T8035C", "G8036A", "C8047T", "C8092A", "C8095A", "C8103T", "C8104T", "G8152A", "T8164C", "T8176C", "A8204G", "A8207G", "T8214A", "G8216A", "T8223C", "C8242T", "A8252T", "G8261A", "A8263C", "T8265G", "G8280T", "A8314G", "C8323A", "C8342A", "G8348A", "-8370G", "G8377A", "A8396T", "A8406G", "G8407C", "G8409A", "T8414C", "A8425C", "G8430A", "C8471T", "T8495C", "G8503A", "T8537A", "A8564G", "G8590C", "T8594C", "C8603A", "A8604G", "T8645G", "G8653A", "A8666C", "T8675C", "G8678A", "A8701T", "T8711C", "G8732A", "C8747T", "C8751T", "A8762T", "G8804A", "A8829T", "A8834G", "C8840T", "A8846G", "G8875A", "A8882C", "A8886C", "C8900T", "A8915G", "A8924T", "A8929G", "G8933A", "T8939C", "G8942A", "T9074C", "C9075T", "G9180A"], "INT": ["E11D", "S24N", "I31V", "V72I", "L101I", "V112I", "V113I", "F126V", "T206S", "K219N", "S255N", "D288N"], "RT-p51": ["K43R", "T135I", "I179T", "T200A", "R211K", "K245M", "D312E", "A369V", "M377T", "K395R", "E396D", "E413D"], "RT-p66": ["K43R", "T135I", "I179T", "T200A", "R211K", "K245M", "D312E", "A369V", "M377T", "K395R", "E396D", "E413D", "N447S", "E471D", "N519S"], "gp120": ["E4G", "N5K", "E21D", "V37A", "E59T", "T78S", "I80V", "L83I", "N102S", "T104N", "-112T", "-114N", "-116T", "E125-", "F131Y", "Q142R", "K158E", "S161N", "V180I", "A191T", "K204D", "E241K", "I243M", "P263T", "I279V", "H280P", "E309D", "K312N", "K315R", "-326N", "K329-", "-370G", "-374T", "D375E", "-376G", "-377T", "-379S", "-381G", "-382S", "I395V", "Q412P", "I463L", "R472K"], "gp41": ["I4F", "V7F", "S107T", "E110D", "D125E", "D129G", "V130E", "K133R", "D148E", "N195K", "T210I", "N212S", "L242S", "V245I", "F263L", "A267V", "I301V", "N302D", "F304Y", "D305N", "I307T", "R317W", "E320N", "V321G", "G326V"], "nef": ["I10V", "G12E", "E18D", "R22A", "A23T", "V30I", "S52N", "A56V", "D63E", "G83A", "S88G", "I101M", "R104K", "E108D", "Y120F", "S163C", "I168M", "R178K", "R182Q", "L194I"], "p17": ["L46V", "L51V", "E62D", "Q65R", "K108R", "K114Q", "S125N"], "p24": ["A6T", "Q9H", "M54T", "I86V", "H87Q", "M96I", "N121T", "V148T", "T171A", "E180D"], "p6": ["S3N", "P5L", "A12E", "E19-", "I21K", "A22T", "S23D", "-26P", "N31G", "-32R", "R33D", "E34Q", "Q35N", "-36P", "V39I"], "p7": ["L24I", "R26K", "T50I"], "pro": ["K41R", "H63A"], "rev": ["E10D", "V16I", "D53H", "S56G", "D62Y", "C63H", "P67S", "H82N", "L83I", "S86C", "V102I", "S106P"], "tat": ["P3L", "K24Q", "V36A", "G57R", "S62N", "D64N", "I69L", "P75S", "T77A"], "vif": ["H27Y", "G37K", "R41K", "S46T", "N113Q", "S130T"], "vpr": ["D7N", "H45Y"], "vpu": ["L5P", "K31R", "L33I", "K35R", "E44K", "E60D", "L61T", "S62D", "T63D", "I65A", "D66T", "M67L", "G68I", "-71M", "-72G", "-73D", "-74Y", "-75D", "-76F"]}, "labels": {"aa": "INT: E11D, S24N, I31V, V72I, L101I, V112I, V113I, F126V, T206S, K219N, S255N, D288N; RT-p51: K43R, T135I, I179T, T200A, R211K, K245M, D312E, A369V, M377T, K395R, E396D, E413D; RT-p66: K43R, T135I, I179T, T200A, R211K, K245M, D312E, A369V, M377T, K395R, E396D, E413D, N447S, E471D, N519S; gp120: E4G, N5K, E21D, V37A, E59T, T78S, I80V, L83I, N102S, T104N, -112T, -114N, -116T, E125-, F131Y, Q142R, K158E, S161N, V180I, A191T, K204D, E241K, I243M, P263T, I279V, H280P, E309D, K312N, K315R, -326N, K329-, -370G, -374T, D375E, -376G, -377T, -379S, -381G, -382S, I395V, Q412P, I463L, R472K; gp41: I4F, V7F, S107T, E110D, D125E, D129G, V130E, K133R, D148E, N195K, T210I, N212S, L242S, V245I, F263L, A267V, I301V, N302D, F304Y, D305N, I307T, R317W, E320N, V321G, G326V; nef: I10V, G12E, E18D, R22A, A23T, V30I, S52N, A56V, D63E, G83A, S88G, I101M, R104K, E108D, Y120F, S163C, I168M, R178K, R182Q, L194I; p17: L46V, L51V, E62D, Q65R, K108R, K114Q, S125N; p24: A6T, Q9H, M54T, I86V, H87Q, M96I, N121T, V148T, T171A, E180D; p6: S3N, P5L, A12E, E19-, I21K, A22T, S23D, -26P, N31G, -32R, R33D, E34Q, Q35N, -36P, V39I; p7: L24I, R26K, T50I; pro: K41R, H63A; rev: E10D, V16I, D53H, S56G, D62Y, C63H, P67S, H82N, L83I, S86C, V102I, S106P; tat: P3L, K24Q, V36A, G57R, S62N, D64N, I69L, P75S, T77A; vif: H27Y, G37K, R41K, S46T, N113Q, S130T; vpr: D7N, H45Y; vpu: L5P, K31R, L33I, K35R, E44K, E60D, L61T, S62D, T63D, I65A, D66T, M67L, G68I, -71M, -72G, -73D, -74Y, -75D, -76F"}}}, {"name": "KU749411", "node_attrs": {"div": 0.16902999999999999, "accession": "KU749411", "clade_membership": {"value": "A1"}, "country": {"value": "PK"}, "date": {"value": 2014.0}, "Strain_name": {"value": "DEMA114PK013"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G112A", "T200C", "C207T", "-215C", "-216C", "-217A", "C218G", "C219A", "A220G", "G221A", "A286G", "-304T", "G386A", "T434C", "A460G", "A461C", "C482T", "G498A", "A508T", "T525C", "A569G", "A654-", "T655-", "A656-", "A659-", "A661T", "T662A", "G667A", "C668T", "C672A", "A676C", "G677A", "G706A", "G712A", "C713G", "A714G", "A715T", "G762A", "C773T", "A779C", "G837A", "G956T", "G960A", "C961T", "A968C", "G977A", "T978C", "T979A", "C1062A", "C1063T", "T1064C", "G1139A", "C1178T", "C1243T", "G1279T", "C1331T", "G1339A", "G1341T", "A1359T", "G1418A", "A1452C", "C1453A", "A1454T", "-1455A", "-1456C", "-1457A", "A1463G", "G1562A", "A1565G", "T1583C", "A1601G", "-1736G", "A1743-", "C1744-", "-1747C", "-1770A", "-1771A", "-1772C", "G1773A", "A1781G", "C1792T", "C1833T", "G1845A", "A1894T", "T1954G", "C1986A", "T2129C", "A2194C", "A2210G", "A2422G", "A2508C", "G2566A", "T2612G", "A2674G", "A2764G", "T2770C", "A2920G", "T3002C", "G3004A", "G3037A", "G3127A", "G3200A", "G3220C", "G3250A", "T3319C", "G3409A", "T3493G", "G3494A", "T3497A", "C3541T", "A3665G", "G3674A", "C3751T", "A3761G", "A3775G", "C3826T", "T3844C", "G3859A", "G3891A", "A3991G", "A4025C", "C4072T", "A4102C", "C4144T", "G4175A", "A4384G", "A4407G", "G4531A", "A4643G", "G4673A", "A4675T", "T4678G", "A4692G", "T4730C", "G4779A", "A4814G", "A4901T", "A4974T", "T5018C", "A5024G", "T5027C", "C5056T", "T5084G", "A5128C", "C5221A", "A5236G", "A5246G", "A5269G", "T5293G", "T5313C", "T5314C", "G5330A", "C5339T", "G5376A", "T5382G", "G5403A", "C5406T", "T5430C", "G5461T", "C5462G", "A5499G", "A5535C", "A5548C", "A5599C", "A5601T", "C5614A", "T5618C", "T5626G", "G5627C", "C5641T", "A5644G", "C5689T", "C5707A", "T5708G", "A5728T", "G5830A", "T5834C", "G5858A", "T5911C", "G5915A", "A5962G", "T5980C", "A5983G", "C5989A", "A6023G", "A6045T", "A6065G", "A6119C", "G6121A", "G6133A", "-6165C", "-6167C", "-6170T", "-6171C", "-6172G", "-6173A", "-6174G", "-6175G", "C6189G", "A6195G", "A6198G", "-6199C", "-6201A", "-6204A", "-6206A", "A6212G", "-6218G", "-6219C", "-6220A", "-6221C", "-6222T", "-6225T", "T6252C", "T6271C", "A6333C", "A6338G", "G6339A", "T6340G", "C6346T", "C6412T", "G6464A", "A6484G", "G6547A", "A6571G", "G6577A", "T6652C", "C6670T", "C6721T", "C6726G", "T6733G", "T6735C", "A6757G", "C6769T", "G6774A", "G6779T", "A6780T", "A6788G", "A6811C", "A6913G", "G6940A", "-6957T", "-6961T", "-6965A", "-6966C", "-6967T", "-6968T", "-6970G", "A6971C", "-6973T", "-6974G", "-6975A", "C6984-", "A6985-", "A6986-", "A6987-", "T6988-", "A6989-", "G6990-", "C6991-", "A6992-", "C6993-", "G6995-", "G6997-", "A7000-", "A7001-", "A7002-", "A7005T", "C7008A", "A7013G", "C7014T", "G7026A", "A7094C", "A7100C", "G7101A", "G7102A", "G7106A", "A7108C", "A7154G", "A7155G", "A7158C", "T7159A", "A7160C", "A7161T", "-7164A", "G7225A", "A7296G", "C7324G", "T7325C", "C7328A", "A7342G", "C7372T", "G7459A", "T7462G", "G7477A", "A7549G", "A7590C", "A7629G", "T7666C", "A7668G", "G7717A", "A7734G", "G7790A", "C7801T", "G7831A", "C7941T", "A7986G", "A8011C", "T8097C", "G8105A", "C8106G", "T8122-", "C8123-", "T8124-", "G8125-", "G8126-", "G8127-", "A8128-", "C8129-", "A8130-", "C8131-", "A8132-", "G8133-", "T8155C", "C8167T", "G8173A", "A8208G", "G8234A", "C8320T", "T8321G", "T8322C", "C8336A", "A8341G", "C8351T", "C8364-", "G8365-", "T8366-", "A8367-", "G8368-", "C8369-", "T8371-", "A8372-", "G8373-", "T8374-", "G8375-", "C8412A", "C8413A", "A8441C", "A8484G", "T8509C", "G8516A", "A8531C", "C8699A", "A8762G", "A8805C", "A8823G", "A8874G", "A8887G", "C8907T", "A8922C", "A8954G", "A9041T", "G9117A"], "INT": ["S39N", "I84L", "G134S", "I203M", "K211R"], "RT-p51": ["T39A", "E138A", "S173A", "A369T"], "RT-p66": ["T39A", "E138A", "S173A", "A369T", "V467I", "S468T", "K524E", "A527T", "I556V"], "gp120": ["A2T", "E21K", "N57D", "K64M", "N71D", "K89Q", "-112S", "-114S", "I133T", "N160T", "S162E", "G240E", "S265Q", "A291G", "D294T", "R307K", "E309L", "E319D", "Y324H", "N327-", "-328N", "Y368F", "-370N", "-372W", "-373P", "-374D", "-376V", "-377N", "N378-", "T380-", "N383-", "D384-", "T385-", "T387V", "R391K", "I414L", "R416Q", "E418N", "-433N", "N434G", "S436L", "E481G"], "gp41": ["F8L", "L9I", "H53Q", "N96T", "N109S", "K122R", "D129E", "K144R", "D163N", "M176I", "P213L", "E228G", "L265S", "A268R", "L274-", "G275-", "R276-", "L277-", "N302S", "V311I", "L340A", "L345I"], "nef": ["R8-", "S9-", "I10-", "V11-", "P24N", "T28K", "I48V", "E65D", "K155Q", "N161D", "R178G", "R196H"], "p17": ["E42G", "E55K", "Q58L", "L61I", "S111-", "K112-", "Q113K", "K114T", "S126K", "K127V"], "p2": ["T8Q", "N9Q", "-10H", "-11T", "-12N", "I13M"], "p24": ["V11I", "V36I", "E75D", "A77I", "E79D", "L83Q", "P111I", "T171V", "G183V", "R203K", "A204S", "T210S"], "p6": ["S23P", "-32S", "-36N", "S38L", "Q52*"], "pro": ["T12I", "G16E"], "rev": ["D7A", "E11D", "I55L", "S86Q", "S92-", "G93-", "T94-", "Q95-", "S103P", "P107S", "V109I"], "tat": ["D2E", "N23S", "A29W", "R53S", "T58P", "P78S"], "vif": ["M29I", "Y30F", "V31S", "K36E", "S46N", "V65I", "Q105H", "S130F", "T157I", "S159R", "K181T"], "vpr": ["Q8H", "N48D", "I63M", "V70A", "D91N", "S93A"], "vpu": ["L2F", "P4S", "C7A", "I13V", "L34R", "R41W", "-70Y", "-71N", "-76P"]}, "labels": {"aa": "INT: S39N, I84L, G134S, I203M, K211R; RT-p51: T39A, E138A, S173A, A369T; RT-p66: T39A, E138A, S173A, A369T, V467I, S468T, K524E, A527T, I556V; gp120: A2T, E21K, N57D, K64M, N71D, K89Q, -112S, -114S, I133T, N160T, S162E, G240E, S265Q, A291G, D294T, R307K, E309L, E319D, Y324H, N327-, -328N, Y368F, -370N, -372W, -373P, -374D, -376V, -377N, N378-, T380-, N383-, D384-, T385-, T387V, R391K, I414L, R416Q, E418N, -433N, N434G, S436L, E481G; gp41: F8L, L9I, H53Q, N96T, N109S, K122R, D129E, K144R, D163N, M176I, P213L, E228G, L265S, A268R, L274-, G275-, R276-, L277-, N302S, V311I, L340A, L345I; nef: R8-, S9-, I10-, V11-, P24N, T28K, I48V, E65D, K155Q, N161D, R178G, R196H; p17: E42G, E55K, Q58L, L61I, S111-, K112-, Q113K, K114T, S126K, K127V; p2: T8Q, N9Q, -10H, -11T, -12N, I13M; p24: V11I, V36I, E75D, A77I, E79D, L83Q, P111I, T171V, G183V, R203K, A204S, T210S; p6: S23P, -32S, -36N, S38L, Q52*; pro: T12I, G16E; rev: D7A, E11D, I55L, S86Q, S92-, G93-, T94-, Q95-, S103P, P107S, V109I; tat: D2E, N23S, A29W, R53S, T58P, P78S; vif: M29I, Y30F, V31S, K36E, S46N, V65I, Q105H, S130F, T157I, S159R, K181T; vpr: Q8H, N48D, I63M, V70A, D91N, S93A; vpu: L2F, P4S, C7A, I13V, L34R, R41W, -70Y, -71N, -76P"}}}]}]}]}]}, {"name": "A1_NODE_0000026", "node_attrs": {"div": 0.09532999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T12G", "A1694G", "T2347A", "T2393C", "T2776C", "A2794G", "G3166A", "T3530C", "G4060A", "T4579C", "G4695A", "G4696A", "G5059A", "G5376A", "A5718G", "G5737A", "G5963A", "T5964A", "A6023C", "-6169T", "-6196T", "A6222-", "A6223-", "A6326G", "T6328-", "G6339A", "T6340-", "A6635G", "-6689G", "-6834A", "T6875C", "T6883C", "C7127A", "G7459A", "C8213G", "C8323T", "A8402G", "A8408T", "A8425C", "T8595C", "A8880G", "C8881T", "T8887A"], "gp120": ["V37K", "N57H", "K150R", "Q155P", "N158E", "T255N", "H280R", "K319E", "E418K", "T436-"], "gp41": ["L304V"], "nef": ["I20M", "A56V", "T180V", "M182K"], "p2": ["T8Q"], "rev": ["P67S"], "vif": ["G37N", "R158K"], "vpr": ["D91N"], "vpu": ["E44K"]}, "labels": {"aa": "gp120: V37K, N57H, K150R, Q155P, N158E, T255N, H280R, K319E, E418K, T436-; gp41: L304V; nef: I20M, A56V, T180V, M182K; p2: T8Q; rev: P67S; vif: G37N, R158K; vpr: D91N; vpu: E44K"}}, "children": [{"name": "A1_NODE_0000027", "node_attrs": {"div": 0.09768999999999999, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A1772G", "A2828G", "A3283G", "T3757C", "A3775G", "G4175A", "A4693G", "A5065G", "T5611A", "-5824A", "C6202T", "-6209A", "G6463A", "A6684C", "G6774A", "A6788G", "-6959A", "-6962A", "-6967T", "-6968A", "-6977G", "G7106A", "T7702A", "G7918A", "G7947A", "G8255A", "G8653A"], "gp120": ["E125-", "N157D", "N261V", "K277T", "D294E", "R307K"], "gp41": ["N133Q", "V318I", "L340F"], "nef": ["R104K"], "p6": ["R33-", "E34-", "Q35-"], "rev": ["A68T"], "tat": ["V80I"], "vif": ["K36R", "K160R"], "vpu": ["-69N"]}, "labels": {"aa": "gp120: E125-, N157D, N261V, K277T, D294E, R307K; gp41: N133Q, V318I, L340F; nef: R104K; p6: R33-, E34-, Q35-; rev: A68T; tat: V80I; vif: K36R, K160R; vpu: -69N"}}, "children": [{"name": "AF069671", "node_attrs": {"div": 0.13376, "accession": "AF069671", "clade_membership": {"value": "A1"}, "country": {"value": "SE"}, "date": {"value": 1994.0}, "Strain_name": {"value": "SE7535"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A417C", "G519A", "T571A", "G612A", "A619C", "C668T", "A669G", "G706A", "G712A", "C713-", "A714-", "A715-", "T782C", "G791A", "A806G", "A839G", "C872T", "A1073G", "T1100C", "C1220T", "A1263T", "G1271T", "G1278A", "G1279A", "G1302A", "C1385T", "A1448G", "A1452C", "A1496G", "T1547C", "G1586A", "C1613T", "A1642G", "A1670G", "C1693T", "G1727A", "G1731A", "A1774G", "C1775A", "A1776C", "G1777A", "G1778A", "A1781C", "A1783C", "G1784A", "C1787-", "C1825T", "G1845A", "A1894T", "A1982G", "A2032G", "T2269C", "G2311A", "G2332A", "C2353T", "A2368G", "G2426T", "T2443C", "G2456C", "A2462G", "A2482G", "A2508C", "T2612G", "C2613A", "A2616G", "A2627G", "C2653T", "A2662G", "A2692G", "C2715A", "T2716A", "A2764G", "T2770C", "C2795G", "A2829T", "A2881G", "A2925G", "A2977C", "T3002C", "T3040C", "T3045C", "C3075T", "T3112C", "C3128A", "G3211A", "T3222C", "A3258G", "T3261C", "A3292G", "G3304T", "G3379A", "G3473A", "G3490A", "C3541T", "A3543T", "T3598C", "A3637G", "C3668T", "G3787A", "C3826T", "G3836A", "T3865C", "A3973G", "T4039C", "C4042T", "C4072T", "C4076A", "G4112A", "T4177C", "A4178G", "C4181A", "G4264A", "G4267A", "G4294A", "A4338G", "G4354A", "C4569T", "G4573A", "T4655C", "A4675G", "T4691A", "C4724T", "T4805G", "A4877G", "T4910C", "C4914T", "T4920C", "A4956C", "T4991C", "A4994C", "T5003C", "A5007C", "C5056A", "A5089T", "A5094G", 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"-6340G", "G6379A", "T6395A", "G6403A", "G6457T", "C6483T", "A6484G", "G6490C", "A6535G", "A6553G", "G6569A", "A6570C", "G6572-", "A6573-", "A6574-", "G6578A", "A6583G", "G6605A", "C6636T", "A6646G", "A6647G", "G6693C", "C6713A", "C6717T", "G6779A", "A6789C", "C6800A", "A6810T", "C6812A", "A6821G", "C6824T", "-6830G", "-6835T", "A6836G", "T6856C", "C6859A", "T6860C", "T6953A", "G6954T", "-6955T", "-6956T", "-6957T", "-6958G", "-6963G", "T6964C", "-6966C", "-6969A", "-6970G", "-6972T", "-6973G", "-6974A", "-6975A", "-6976T", "-6979C", "A6985-", "A6986-", "A6987-", "T6988A", "G6990T", "C6991G", "A6992C", "-6994A", "A6996C", "G6997A", "-6998G", "-6999G", "A7000G", "A7002G", "T7015C", "C7020A", "A7021G", "A7089G", "T7095C", "G7102A", "A7127T", "G7147A", "A7158G", "A7160-", "A7162G", "A7163T", "C7164A", "T7165C", "G7198A", "C7201T", "G7225A", "G7269A", "C7452T", "A7590C", "C7625T", "G7627C", "C7678T", "C7690A", "A7700C", "G7712A", "T7751A", "G7765A", "G7769A", "A7782C", "G7790A", "A7791G", 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"-10P", "-11N"], "p24": ["T178S", "E180D", "G183N", "V191I"], "p6": ["P5L", "G18R", "Q30P", "K31-", "D32-", "P49L"], "pro": ["G16E", "I62V"], "rev": ["D7N", "V16I", "Q24N", "S61N", "T62A", "R66G", "H82N", "S86R", "N116E"], "tat": ["V36A", "R53K", "R57G", "T58A", "S62N", "P70Q", "K71Q", "P73S", "S81P"], "vif": ["Y30C", "H73Q", "H110Y", "F112L", "I124L", "R132S", "Q136H", "K141Q", "T157K", "K168I", "T170A", "P177S", "Q178R"], "vpr": ["A4V", "H28Q", "N48D", "S93P"], "vpu": ["S2I", "E5Q", "C7W", "V10A", "V21I", "V22A", "K31E", "R37K", "K38E", "R41G", "I43V", "K44E", "R47A", "V65I", "-70Y", "D78-", "N80-"]}, "labels": {"aa": "INT: A21T, L101I, V113I, I135V, Q136K, K188R, A265V; RT-p51: V111L, D121H, S123G, E138A, S173E, K174R, I178V, A207E, L234V, Q245V, K277R, V317A, A327V, P345T, V376A, K388R, F389S, M403I; RT-p66: V111L, D121H, S123G, E138A, S173E, K174R, I178V, A207E, L234V, Q245V, K277R, V317A, A327V, P345T, V376A, K388R, F389S, M403I, D460N, H483L; gp120: A2V, E4G, E59K, E64K, N71Y, K89E, N102E, T104H, -105Y, -106N, -107I, N108T, -109V, T110K, -111N, -112I, -113T, -114V, -115S, -116S, -117N, -118R, K127-, K141Q, I153L, P155K, N160K, S162N, S181T, P210L, K212N, E239T, G240K, K241I, V242M, K243-, D251N, N255T, K265E, R280P, Q287K, A288V, E309K, K312A, Q316K, E319I, Q320K, H324Y, -326D, N327D, N335K, S336P, W367I, -368L, -370S, -372K, -373M, -374N, -375D, N378-, P389Q, Q412R, V414A, N435S, R472K; gp41: A50V, N96T, Q108Y, D129E, E137K, L150M, A156T, N160T, D163S, K172R, S192A, T208I, G215D, L216P, V238A, A243T, D247E, F263L, I298S, Q323L, I329F; nef: K4R, S9R, M20I, H40Y, I48-, S52-, E65G, I101V, Y115H, E154K, A156D, I168M, R196Q; p1: K4R; p17: K28Q, E62K, F79Y, D93N, K95T, K112E, S126K, K127-; p2: N9H, -10P, -11N; p24: T178S, E180D, G183N, V191I; p6: P5L, G18R, Q30P, K31-, D32-, P49L; pro: G16E, I62V; rev: D7N, V16I, Q24N, S61N, T62A, R66G, H82N, S86R, N116E; tat: V36A, R53K, R57G, T58A, S62N, P70Q, K71Q, P73S, S81P; vif: Y30C, H73Q, H110Y, F112L, I124L, R132S, Q136H, K141Q, T157K, K168I, T170A, P177S, Q178R; vpr: A4V, H28Q, N48D, S93P; vpu: S2I, E5Q, C7W, V10A, V21I, V22A, K31E, R37K, K38E, R41G, I43V, K44E, R47A, V65I, -70Y, D78-, N80-"}}}, {"name": "A1_NODE_0000028", "node_attrs": {"div": 0.10370999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["-215A", "C426A", "T614G", "G716T", "T771G", "C773T", "T774G", "T992G", "A1017C", "A1719C", "G1739-", "A1740-", "T1741-", "G1743-", "C1744-", "C1745-", "C1957T", "G1963A", "A2241G", "C4144T", "G4276T", "C4288T", "T4697G", "C4937A", "T4982G", "G5167A", "G5444C", "G5556C", "C5612A", "A5702G", "T5787C", "A5794G", "A5848G", "C6023T", "A6131C", "C6181-", "-6199C", "-6203G", "-6210T", "-6224G", "-6226A", "C6278A", "G6336A", "-6340C", "G6466T", "A6573G", "A6659G", "G6716A", "T6733A", "-6982G", "A7089C", "G7101A", "A7773G", "C7801G", "A8011C", "G8184A", "C8595G", "A8887G", "A9134T"], "INT": ["E167D"], "RT-p51": ["K49R"], "RT-p66": ["K49R"], "gp120": ["H57Y", "K93Q", "Q142R", "S161N", "N201R", "E204D", "A288T", "K312E", "-375E", "Q412P", "N432D"], "gp41": ["N157S", "N166K", "R294Q"], "nef": ["L85V", "K182R"], "p17": ["L31M", "D93E"], "p24": ["S14A", "L15V", "H87Q", "M96L"], "p6": ["I14L"], "rev": ["R14T", "I55L"], "vif": ["N37K", "D117E", "Q136P"], "vpu": ["K32R", "-76L", "-77G"]}, "labels": {"aa": "INT: E167D; RT-p51: K49R; RT-p66: K49R; gp120: H57Y, K93Q, Q142R, S161N, N201R, E204D, A288T, K312E, -375E, Q412P, N432D; gp41: N157S, N166K, R294Q; nef: L85V, K182R; p17: L31M, D93E; p24: S14A, L15V, H87Q, M96L; p6: I14L; rev: R14T, I55L; vif: N37K, D117E, Q136P; vpu: K32R, -76L, -77G"}}, "children": [{"name": "AB287376", "node_attrs": {"div": 0.14054, "accession": "AB287376", "clade_membership": {"value": "A1"}, "country": {"value": "RW"}, "date": {"value": 1992.0}, "Strain_name": {"value": "92RW025A"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T10A", "-24C", "G47T", "G49T", "A50G", "T95C", "C96T", "G161T", "T163A", 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{"aa": "INT: R20K, S119G, I208M; RT-p51: E40D, F171Y, E250D, D291E, I292V, D324E, V435A; RT-p66: E40D, F171Y, E250D, D291E, I292V, D324E, V435A, Q520L, K524E, G527E; gp120: A2T, E34D, K37A, T104N, -109I, -111I, -112N, -113N, -114I, -115T, -116T, -117N, -118I, -119T, -120E, -121D, -122M, -123R, -124G, -125E, -126I, F131Y, E136V, K141R, I156L, N159G, S162N, A172T, E183D, R201K, K203P, K243R, D251N, E262K, T269V, H302F, N304T, S306N, K307E, E319T, -326E, I332K, -368N, -370N, T371N, -372T, -373R, -376K, -377I, -379G, -381E, -382S, D384S, P389H, M398R, R401E, R416N, K418R, L425I, S433G, N434D, -436N, T439I, D446N, R448K, E481A; gp41: K77Q, D109S, D113E, N126S, D129G, Q133K, D163E, G215E, L216P, G220E, G281S, W286G, G293S, I301V, I321T, I325F, G326C, I329L, H331N, I332V; nef: V16I, T28K, H40F, I43V, I48M, D63E, E64T, D98E, K105Q, E108D, I133V, A156D, R178K, R196Q, L198M; p17: K18R, S49G, A54T, M61I, A83V, D121A, K127N; p2: Q8T; p24: I153V, T171I, A207T; p6: G18E, I21K, A22T, P24A, P25L, -33K, -34Q, -35D, -36P; p7: K10R, I12M, -13I; pro: I15V, K45R; rev: D7A, E10D, Y28H, S34T, S54T, S67P, L73F, R99K, V104G, P107S, V108A, G111E; tat: D2E, N23T, Q35L, R53S, Q54K, Q60H, I74T, I80N, S81P, E85K; vif: H27Y, F39L, E45D, H80Q, K92R, K122R, E134V, K141Q, T157I, R167K, K168I, P183H, S186N; vpr: P37-, W38-, L39-; vpu: L18I, R45K, E60D, L61M, S62D, T63E, V65A, E66K, M67L, G68-, N69V, -70E, -71R, -72G, -73N, -74Y, -75D, -79V"}}}, {"name": "A1_NODE_0000029", "node_attrs": {"div": 0.11255999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C435T", "T596C", "C606A", "G607A", "G791A", "G977A", "C1385T", "A1452C", "G1474A", "G1499A", "C1598T", "G1657A", "A1673G", "-1785A", "-1786C", "C1826A", "A2407G", "T2449C", "G2463A", "A3043G", "A3071G", "T3112C", "A3192G", "T3319C", "G3385A", "T3644A", "T4075C", "G4195A", "A4994C", "A5030G", "G5036A", "T5078A", "G5226A", "A5336C", "G5385A", "A5431G", "C5491T", "A5587G", "A5603T", "C5614G", "G5643A", "G5718A", 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RT-p66: S123N, Q245V, I326V, K366R, L517I; gp120: A3T, -107T, V154E, N267T, Y290F, T334N, T380-, N383S, Q404K, K474R; gp41: I4L, Q108H, V304L; nef: I133T, Y135F; p1: S9N; p17: R91K, N124S; p2: -12N; p6: -26Q; p7: R3K; pro: L10I; rev: L78I, I109V; tat: T19A, R57G, K71E; vif: D61E; vpr: T63I, Q77H, G94S; vpu: P3A, G27A, I43L, T63A"}}, "children": [{"name": "MZ642269", "node_attrs": {"div": 0.16468999999999998, "accession": "MZ642269", "clade_membership": {"value": "A1"}, "country": {"value": "RW"}, "date": {"value": 2019.0}, "Strain_name": {"value": "GWE_68F_Con"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "G378A", "C379G", "T396C", "A440G", "C477G", "C482T", "A503G", "A509G", "A592G", "T593G", "A619G", "A645G", "A654G", "T655C", "T662G", "G671A", "G686A", "A689C", "A708C", "T788A", "C827T", "C851T", "C917T", "T962G", "G998C", "G1019A", "T1052C", "C1094T", "C1220T", "G1271A", "C1299T", "T1329A", "T1422C", "C1449A", "A1450G", "C1490T", "A1495G", 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"G6079A", "C6087A", "A6088G", "C6097T", "C6101T", "A6112G", "C6116T", "T6134C", "A6158G", "T6163-", "A6164-", "C6166T", "-6167C", "-6170A", "-6171A", "-6172C", "-6173A", "-6174A", "-6175C", "-6177T", "-6180A", "-6181G", "C6184T", "A6197G", "-6201C", "-6205C", "-6206T", "-6207T", "T6210C", "-6211C", "-6213A", "-6214C", "-6217C", "-6225A", "G6227C", "A6228T", "C6256T", "G6268T", "A6273G", "G6274A", "A6279G", "G6303A", "T6315G", "A6316G", "A6318C", "T6322A", "-6328T", "T6334C", "A6336C", "C6364A", "G6368A", "A6430T", "A6463G", "A6500T", "A6507T", "C6563T", "G6577T", "T6582C", "G6593A", "C6601T", "A6602T", "C6607T", "C6612G", "C6618A", "G6638A", "A6639C", "A6646G", "A6647C", "G6659C", "C6660T", "C6684A", "A6686G", "G6693A", "-6697G", "A6703-", "C6708T", "C6713A", "A6714G", "A6728G", "C6729G", "A6730T", "G6732A", "A6733C", "G6742A", "A6765T", "C6769T", "A6770G", "G6771A", "T6776G", "A6791G", "A6798G", "A6799G", "A6821C", "A6834-", "A6858G", "C6859T", "T6876C", "A6881G", "G6905A", "A6926G", "-6955G", "-6956A", "-6957A", "-6958A", "A6959G", "T6961C", "-6963C", "-6966A", "T6967C", "-6969A", "-6970A", "-6972C", "-6973A", "-6974C", "-6975A", "-6976A", "-6979G", "-6980T", "-6981C", "G6982A", "-6983T", "-6984C", "G6995A", "G6997T", "A7000-", "A7001-", "A7002-", "T7003-", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "A7037G", "T7039C", "A7055C", "G7056A", "G7094A", "A7106G", "A7127C", "T7144A", "G7147A", "A7149G", "A7160G", "A7161G", "G7181A", "G7182C", "T7192C", "C7201T", "A7231G", "A7238C", "A7268G", "G7269A", "G7322T", "C7324T", "G7390T", "T7406G", "A7447C", "C7463A", "T7609C", "A7620G", "T7622A", "G7640A", "G7657A", "T7666C", "A7668G", "C7690A", "A7691G", "T7692A", "A7701G", "A7702G", "G7712A", "A7713T", "G7717A", "A7721G", "C7723A", "A7782C", "T7796A", "A7799C", "G7801T", "T7813C", "C7843A", "G7862A", "T7877A", "A7918G", "C7926T", "A7989C", "T8008A", "C8047T", "G8050T", "T8097C", "G8152A", "T8171C", "T8182C", "A8194G", "T8196A", "C8221T", "A8222G", "G8231A", "C8232G", "A8255G", "T8256C", "G8268C", "A8275G", "A8288T", "C8311T", "T8323C", "G8349A", "T8390C", "A8405G", "T8408C", "C8413A", "T8414G", "C8415G", "A8458G", "A8469G", "T8485C", "T8495C", "G8522A", "C8568T", "G8590C", "G8634C", "C8651G", "A8656G", "A8666C", "G8678A", "C8687T", "C8741T", "T8795G", "A8801G", "A8834G", "G8870T", "G8873C", "G8888A", "A8892G", "A8901C", "G8902C", "C8903G", "A8915G", "A8929T", "A8930T", "C8934T", "G8942T", "A8954C", "G8955A", "T8958C", "G8977A", "A8978C", "C8979A", "A8980G"], "INT": ["V32I", "I60V", "Q136K", "G193R", "R284G"], "RT-p51": ["E40D", "V118I", "E138A", "E177D", "G190A", "T200A", "F214L", "V245A", "E250D", "D291E", "K388R", "V435A"], "RT-p66": ["E40D", "V118I", "E138A", "E177D", "G190A", "T200A", "F214L", "V245A", "E250D", "D291E", "K388R", "V435A", "T470P", "H483L", "S491P", "S534A"], "gp120": ["E4K", "N5K", "V16I", "I56M", "E59A", "E64K", "N66D", "K69T", "T78K", "N102D", "-105V", "-106L", "-109I", "-111E", "-112L", "-113M", "R138S", "K140R", "R150K", "E154G", "N159R", "N160A", "N161T", "A172T", "T216S", "Q218L", "K241N", "K243T", "E247K", "T250S", "A253G", "V261A", "E262T", "K265Q", "T269L", "T277K", "S278G", "R280H", "I281M", "P285L", "Q287R", "A291Y", "E294D", "N304I", "S306D", "S308A", "T313A", "Q315R", "E323Q", "N327-", "-328N", "N335S", "L341P", "I343V", "G351R", "N358D", "-368K", "N369D", "-370T", "T371N", "-372K", "-373T", "-374Q", "-376S", "-377S", "D384M", "T385N", "I395V", "R401Q", "V414I", "R416K", "K418E", "D432S", "-436G", "G443T", "K462Q", "R472E"], "gp41": ["V7F", "Q29H", "S35A", "L54M", "K106R", "S107T", "E110D", "D113N", "K122R", "D129E", "I130E", "Q133R", "E137I", "N140E", "N160T", "S165T", "K166H", "V187I", "S192T", "T208I", "G215D", "Q229P", "L265S", "I298N", "I307V", "A310R", "I318A", "G322A", "R324G", "I329F"], "nef": ["G3S", "P24Q", "P25A", "K39R", "I43V", "I48T", "G83A", "D98H", "K105R", "E108D", "D151E", "E176D", "E177D", "K184E", "S187P", "R196L", "F202Y", "Y203N", "C206R"], "p17": ["A15R", "P48A", "Y86W", "K95R", "I104V", "I107A", "N109K", "S125R", "K127N"], "p2": ["N9-", "-10S", "-11P"], "p24": ["S200T"], "p6": ["T8S", "M17I", "E19D", "E20S", "I21H", "A22P", "S23T", "P24Q", "P25E", "E29T", "Q30P", "K31-", "D32-", "L38A", "V39I"], "p7": ["K10R", "R11K", "K34R"], "pro": ["K57R", "K69Q"], "rev": ["V16I", "S54T", "T68S", "V102I", "V108A", "S112P", "N116E"], "tat": ["D2E", "N7K", "N23T", "Q35P", "N40T", "Q60Y", "S62N", "P73S"], "vif": ["N22H", "R36K", "F39C", "R41K", "Y44F", "H48N", "V51L", "R63K", "V65I", "R67K", "H73Q", "K92N", "R93S", "D113A", "P136H", "K151R", "V154T", "T155K", "T157P", "T159I", "R173K", "G182D", "*193W"], "vpr": ["G41D", "H45Q", "V89G", "S93A"], "vpu": ["S2N", "K35R", "R47S", "-70D", "-71N", "L76P", "D78Y", "-79N", "N80H"]}, "labels": {"aa": "INT: V32I, I60V, Q136K, G193R, R284G; RT-p51: E40D, V118I, E138A, E177D, G190A, T200A, F214L, V245A, E250D, D291E, K388R, V435A; RT-p66: E40D, V118I, E138A, E177D, G190A, T200A, F214L, V245A, E250D, D291E, K388R, V435A, T470P, H483L, S491P, S534A; gp120: E4K, N5K, V16I, I56M, E59A, E64K, N66D, K69T, T78K, N102D, -105V, -106L, -109I, -111E, -112L, -113M, R138S, K140R, R150K, E154G, N159R, N160A, N161T, A172T, T216S, Q218L, K241N, K243T, E247K, T250S, A253G, V261A, E262T, K265Q, T269L, T277K, S278G, R280H, I281M, P285L, Q287R, A291Y, E294D, N304I, S306D, S308A, T313A, Q315R, E323Q, N327-, -328N, N335S, L341P, I343V, G351R, N358D, -368K, N369D, -370T, T371N, -372K, -373T, -374Q, -376S, -377S, D384M, T385N, I395V, R401Q, V414I, R416K, K418E, D432S, -436G, G443T, K462Q, R472E; gp41: V7F, Q29H, S35A, L54M, K106R, S107T, E110D, D113N, K122R, D129E, I130E, Q133R, E137I, N140E, N160T, S165T, K166H, V187I, S192T, T208I, G215D, Q229P, L265S, I298N, I307V, A310R, I318A, G322A, R324G, I329F; nef: G3S, P24Q, P25A, K39R, I43V, I48T, G83A, D98H, K105R, E108D, D151E, E176D, E177D, K184E, S187P, R196L, F202Y, Y203N, C206R; p17: A15R, P48A, Y86W, K95R, I104V, I107A, N109K, S125R, K127N; p2: N9-, -10S, -11P; p24: S200T; p6: T8S, M17I, E19D, E20S, I21H, A22P, S23T, P24Q, P25E, E29T, Q30P, K31-, D32-, L38A, V39I; p7: K10R, R11K, K34R; pro: K57R, K69Q; rev: V16I, S54T, T68S, V102I, V108A, S112P, N116E; tat: D2E, N7K, N23T, Q35P, N40T, Q60Y, S62N, P73S; vif: N22H, R36K, F39C, R41K, Y44F, H48N, V51L, R63K, V65I, R67K, H73Q, K92N, R93S, D113A, P136H, K151R, V154T, T155K, T157P, T159I, R173K, G182D, *193W; vpr: G41D, H45Q, V89G, S93A; vpu: S2N, K35R, R47S, -70D, -71N, L76P, D78Y, -79N, N80H"}}}, {"name": "MT942807", "node_attrs": {"div": 0.16587, "accession": "MT942807", "clade_membership": {"value": "A1"}, "country": {"value": "RW"}, "date": {"value": 2007.0}, "Strain_name": {"value": "R977F_175059_1"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C160T", "G161A", "C218-", "A235G", "A263G", "T303A", "G378T", "G463A", "A480G", "G481A", "G518A", "G519A", "A520T", "A521G", "A540C", "T571A", "T602C", "A654T", "A656G", "C672A", "A674G", "A675C", "C713T", "T716A", "G762A", "C765T", "C767T", "G803A", "A810G", "A836G", "A881G", "T884C", "G899A", "C902T", "T926G", "C974T", "T978C", "G998A", "A1002G", "A1079G", "T1100C", "C1136A", "T1182C", "T1187C", "A1192G", "C1211T", "T1223C", "T1229C", "A1242G", "A1259G", "T1262A", "G1268A", "G1271T", "G1278A", "G1279A", "A1295C", "T1296C", "A1298G", "T1322C", "G1339A", "G1350A", "C1403T", "G1418A", "T1439C", "A1442G", "T1451A", "C1453A", "-1455A", "-1456C", "-1457A", "C1541T", "A1580G", "G1586A", "G1592A", "A1642G", "G1694A", "G1718T", "T1724G", "-1739G", "-1740A", "-1741T", "T1749G", "A1759G", "A1771G", "A1781T", "C1825T", "G1852A", "A1857G", "C1903T", "A1907G", "G1998A", "A2007G", "A2056G", "C2095T", "A2126G", "A2127C", "G2134A", "G2224A", "C2299T", "G2311A", "A2347C", "G2380T", "G2459A", "C2584T", "T2612G", "C2613T", "A2674G", "G2682A", "G2683A", "A2734G", "A2752G", "A2829T", "A2842G", "G2909C", "A2969G", "C3031A", "A3096T", "A3151C", "A3196G", "T3222C", "A3241C", "A3251G", "C3252T", "T3253C", "C3266T", "A3280G", "T3355C", "C3405T", "T3412G", "G3442A", "C3500T", "C3504A", "G3508A", "C3530T", "A3538T", "C3542T", "C3577T", "C3589T", "C3610T", "G3616A", "A3637C", "G3675A", "G3694A", "A3727G", "C3757T", "G3787A", "A3795G", "G3834A", "G4092C", "A4105G", "T4198C", "G4264A", "A4270G", "T4276C", "A4391T", "A4429C", "A4455T", "A4492C", "G4539A", "G4549A", "C4579T", "G4689A", "A4692C", "A4694C", "A4696G", "A4722T", "G4726A", "T4738C", "C4757A", "T4769A", "G4774C", "A4784G", "T4799A", "G4802A", "A4816G", "A4819C", "T4868C", "C4890T", "C4914T", "A4937G", "A4988C", "T4991C", "A4993C", "A5049G", "C5056A", "A5061G", "G5065A", "G5086A", "T5102C", "A5112G", "G5128A", "C5134A", "G5140A", "A5159G", "T5160C", "G5161A", "T5179G", "C5186A", "T5209C", "C5213A", "C5248T", "T5260C", "T5293C", "A5302G", "C5398T", "C5406T", "C5444A", "A5446C", "G5448A", "T5451C", "C5454T", "A5461G", "A5462T", "T5492C", "G5493A", "A5494C", "A5495G", "G5534A", "A5548C", "C5556A", "A5557G", "T5602A", "A5611C", "T5613A", "T5628G", "G5635A", 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"A272P", "I292V", "D312E", "Q334L", "V376A", "T386V", "A437V"], "RT-p66": ["K11A", "E122K", "S173V", "G196E", "A272P", "I292V", "D312E", "Q334L", "V376A", "T386V", "A437V", "T470N", "H483Y", "E514D", "G527E"], "gp120": ["A2V", "E4G", "E34D", "T35P", "Q86E", "-105D", "-106A", "N108V", "-109N", "T110S", "-111N", "-112T", "S130T", "F131Y", "M133V", "L137I", "K141Q", "R142K", "K143R", "Y145R", "P155Q", "D157N", "E158K", "N159D", "N160D", "N169D", "T174A", "K203A", "K212N", "G240T", "K241R", "K243M", "I249F", "N255S", "I257L", "V261D", "K265N", "T269A", "N272S", "T288S", "A291T", "E309R", "E312T", "Q316K", "E323N", "-326G", "N327Y", "N334D", "G351Q", "S360T", "G361D", "N364K", "S365G", "W367-", "-368F", "-370D", "-372F", "-373N", "-374G", "E375T", "-376E", "-377N", "-379N", "-380L", "-381E", "-382G", "I395F", "R416Q", "L425I", "S433N", "N434T", "N435S", "-436T", "T437N", "E438D", "D446N", "R448K", "E479Q"], "gp41": ["V7L", "A14T", "H53Q", "K77R", "E110Y", "D113E", "L118M", "I130T", "I135L", 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E375T, -376E, -377N, -379N, -380L, -381E, -382G, I395F, R416Q, L425I, S433N, N434T, N435S, -436T, T437N, E438D, D446N, R448K, E479Q; gp41: V7L, A14T, H53Q, K77R, E110Y, D113E, L118M, I130T, I135L, E137A, S157G, A189V, V190M, I193V, H209L, R214E, E223G, D232T, A245F, S251N, R259Q, I266V, A267V, A268T, I298T, N302S, A310V, I321L, R324V, I325L; nef: K4N, V16I, P25S, T28A, D38A, E65D, G83Q, V85F, H89F, K104R, V114I, Y120I, F143Y, E152V, N161D, S163I, R178G, R182M, R188G, L191R, R194I; p1: K4R; p17: A15S, R43K, S49D, M61I, E62M, K69Q, F79Y, I107L, Q113K, K114Q; p2: N9Q, -10Q, -11T; p24: V11I, H12Y, I27V, I91V, K154R, T171A, E180D, G183N, R203K, A207T; p6: E13D, F15L, S23P, P25R, K27E, E29R, Q30D, K31R, -33Q, -34T, -35P, P49L; pro: K20R, N37D, C67Y, K70R; rev: D7N, E11D, T14K, K32R, S34T, R50N, C63F, S67P, T68E, D84G, S86D, V97L, R99G; tat: K24Q, K29V, L39S, N40R, R53K, T58P, S61G, I74L, G79R, I80D; vif: A35T, K37R, S46C, R47K, V51A, R63T, K77R, D78A, H110Y, E134D, T155A, T157K, T159A, R160K, R167K, K176E, R181K, P183H, G185E, C192H; vpr: Q3R, M19A, D25E, H28N, P37T, G41E; vpu: S2Q, C7W, V10T, G11A, A27V, Y30C, K31R, L33E, R47K, S62A, V65I, -74H, -75D, -79A, L82M"}}}]}]}]}, {"name": "A1_NODE_0000030", "node_attrs": {"div": 0.09888999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C698T", "G762A", "G803A", "A1839G", "A1907G", "T2062C", "T2281A", "C2296T", "A3370G", "A3478G", "A4475C", "C4826A", "G5556A", "A6194G", "A6195G", "A6212-", "G6232A", "G6323A", "A6338G", "T6385C", "-6833A", "C6850A", "T6964-", "A6978-", "-6980G", "-6981A", "C8047T", "A8208G", "A8424C", "C8471T", "C8477T", "A8484G", "C8702T", "T8740C", "A8746T", "A8834G", "T8843G", "C8849T"], "INT": ["I234L"], "RT-p66": ["K366R"], "gp120": ["T110-", "-326K", "L425I"], "nef": ["T28P", "I48V", "D63E"], "p24": ["V11I"], "rev": ["R14K"], "vif": ["H80Q"]}, "labels": {"aa": "INT: I234L; RT-p66: K366R; gp120: T110-, -326K, L425I; nef: T28P, I48V, D63E; p24: V11I; rev: R14K; vif: H80Q"}}, "children": [{"name": "A1_NODE_0000031", "node_attrs": {"div": 0.10118999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["-1785G", "T1790A", "T4691A", "C5478T", "A5649G", "A5794G", "-5812G", "-6170G", "-6171T", "-6172C", "-6173A", "-6175T", "T6382A", "C6427T", "A6505C", "C6618A", "C7690A", "A7700G", "A8549G"], "gp120": ["N108-", "N335S"], "gp41": ["D129Q"], "p6": ["-36A"], "vpu": ["T63E", "M67L", "G68-", "-79D"]}, "labels": {"aa": "gp120: N108-, N335S; gp41: D129Q; p6: -36A; vpu: T63E, M67L, G68-, -79D"}}, "children": [{"name": "A1_NODE_0000032", "node_attrs": {"div": 0.10658999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G495A", "A585G", "C586T", "A656G", "T771G", "A820G", "C823G", "C1094T", "G1256A", "A1295C", "A1298G", "G1350C", "-1455A", "-1456A", "-1457T", "A1458-", "A1459-", "C1460-", "A1461G", "G1568A", "G1589A", "G1592A", "C1610T", "G1845A", "A3192G", "T3380C", "T3754C", "G3770A", 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"A6191T", "T6193A", "G6194T", "G6195T", "A6197G", "-6198C", "-6199C", "-6201A", "-6203G", "-6204T", "-6205C", "-6206A", "-6207C", "-6208G", "A6229C", "G6253A", "A6276C", "C6278A", "T6285A", "-6328A", "A6333G", "-6340A", "A6371G", "G6403A", "G6466T", "G6572C", "A6575-", "A6576-", "G6577-", "G6578-", "C6601A", "C6613A", "C6619T", "A6623C", "G6638C", "C6641G", "T6643C", "A6646T", "A6648G", "C6673T", "T6676C", "A6723T", "G6743A", "C6769T", "A6786G", "T6787G", "A6789G", "C6800G", "C6812G", "G6819A", "A6820G", "-6831G", "-6832G", "-6835C", "A6836G", "C6838A", "A6840C", "T6849A", "A6850G", "C6855A", "C6859A", "A6947T", "G6948A", "C6951G", "T6952C", "G6954A", "-6955C", "A6960-", "T6961-", "A6965-", "-6972G", "-6973C", "-6975T", "-6976G", "-6977C", "-6978A", "-6982G", "A6989G", "G6990A", "C6991T", "-6998G", "C7020A", "G7026A", "G7033A", "T7075C", "A7100C", "G7101A", "G7147A", "A7155C", "C7156T", "A7160G", "A7161G", "T7165A", "C7170T", "G7198A", "A7216G", "A7238C", "A7241C", "G7269A", "G7291A", "G7343A", "A7373C", "A7375G", "G7390A", "A7398T", "C7460T", "C7625T", "G7627C", "G7628A", "A7629G", "G7633A", "C7645T", "A7673G", "T7681C", "A7701C", "T7702C", "G7753A", "A7791G", "C7792T", "G7871A", "G7873A", "A7880G", "T7912C", "T7948A", "C7949A", "G7997A", "A7998C", "G8019A", "G8050C", "C8095A", "T8171G", "G8181C", "A8188G", "A8204C", "C8232T", "G8255A", "A8273G", "G8274C", "T8321A", "C8331T", "T8332A", "C8351T", "G8354A", "C8406T", "C8412G", "C8424A", "G8484A", "T8485C", "A8570G", "G8590C", "C8595G", "G8597T", "C8603G", "T8675C", "A8701T", "T8720C", "A8726C", "C8740T", "T8746A", "C8751T", "T8770A", "T8789G", "G8807A", "G8875A", "A8882C", "A8886C", "A8892C", "A8917G", "C8927A", "T9040C"], "INT": ["A21T", "I31V", "L101I", "I201V", "I208L", "Q216H"], "RT-p51": ["K64R", "E138A", "I142V", "S173L", "E177D", "Q245E", "A272G", "V276I", "K277R", "K281R", "S359T", "K390R", "K395R", "E396D"], "RT-p66": ["K64R", "E138A", "I142V", "S173L", "E177D", "Q245E", "A272G", "V276I", "K277R", "K281R", "S359T", "K390R", "K395R", "E396D", "S468P", "G527E"], "gp120": ["A2T", "N5K", "K18R", "T35A", "E64N", "K69T", "N71Y", "-105D", "E125-", "M133I", "K141T", "Q142K", "V144E", "N160S", "S162E", "I173V", "N201K", "E204D", "K241-", "V242-", "K243-", "I257L", "N261A", "E262Q", "P263A", "K265R", "Y290F", "A291T", "T292G", "D294I", "D297N", "N311R", "K312R", "Q316E", "E319K", "Q320E", "R322K", "E323K", "K326G", "-328E", "K329T", "I332K", "T334N", "S335K", "S365Y", "T366S", "W367Y", "N369-", "T371-", "-373S", "-374M", "-375Q", "-379D", "-381E", "-382A", "P389Q", "R391K", "R416Q", "N434T", "-436G", "T439I", "K462Q", "I463L", "R472K"], "gp41": ["A14T", "I24L", "Q32L", "H53Y", "Q108Y", "D109S", "I124V", "N133A", "D163G", "V190I", "I193V", "L216I", "D232T", "S239N", "L290A", "G293A", "I301L", "A310V", "V318I", "R324A", "L340I", "A343V"], "nef": ["R22C", "P24A", "P28T", "V48T", "G83A", "L85V", "Y120F", "F143Y", "D149E", "R178K", "K182Q", "K184Q", "K192R"], "p17": ["S9R", "A15T", "K28T", "R30K", "S49D", "A54T", "E62G", "E73D", "D93E", "S111N", "N124S", "K127Q"], "p2": ["Q8T", "-10V", "I13-"], "p24": ["P111T", "G120N", "T178S", "E187D", "S200A"], "p6": ["F15L", "A22T", "P25L", "Q30K", "K31N", "R33G", "A36G", "L38P", "V39S"], "p7": ["R7K", "K20R"], "pro": ["L10V", "N37D", "K45R", "L63H", "K70R"], "rev": ["E10A", "K14T", "I18L", "S34N", "R50N", "A68P", "L83I", "V108G", "T114A"], "tat": ["T19A", "K24N", "Y26F", "V36S", "Q60H", "D64A", "P70S", "V80E"], "vif": ["K33R", "N37D", "D61E", "R67T", "E88V", "D117E", "I124L", "T137A", "T159I", "K160R", "T170A", "Q178R", "C192H"], "vpr": ["M19T", "D25E", "H28N", "F69L", "Q77S", "I83T", "G86R", "V89G", "G94S"], "vpu": ["V10A", "K31R", "L33V", "D58E", "S62E", "V65A", "E66K", "-73H", "-75D", "D78G"]}, "labels": {"aa": "INT: A21T, I31V, L101I, I201V, I208L, Q216H; RT-p51: K64R, E138A, I142V, S173L, E177D, Q245E, A272G, V276I, K277R, K281R, S359T, K390R, K395R, E396D; RT-p66: K64R, E138A, I142V, S173L, E177D, Q245E, A272G, V276I, K277R, K281R, S359T, K390R, K395R, E396D, S468P, G527E; gp120: A2T, N5K, K18R, T35A, E64N, K69T, N71Y, -105D, E125-, M133I, K141T, Q142K, V144E, N160S, S162E, I173V, N201K, E204D, K241-, V242-, K243-, I257L, N261A, E262Q, P263A, K265R, Y290F, A291T, T292G, D294I, D297N, N311R, K312R, Q316E, E319K, Q320E, R322K, E323K, K326G, -328E, K329T, I332K, T334N, S335K, S365Y, T366S, W367Y, N369-, T371-, -373S, -374M, -375Q, -379D, -381E, -382A, P389Q, R391K, R416Q, N434T, -436G, T439I, K462Q, I463L, R472K; gp41: A14T, I24L, Q32L, H53Y, Q108Y, D109S, I124V, N133A, D163G, V190I, I193V, L216I, D232T, S239N, L290A, G293A, I301L, A310V, V318I, R324A, L340I, A343V; nef: R22C, P24A, P28T, V48T, G83A, L85V, Y120F, F143Y, D149E, R178K, K182Q, K184Q, K192R; p17: S9R, A15T, K28T, R30K, S49D, A54T, E62G, E73D, D93E, S111N, N124S, K127Q; p2: Q8T, -10V, I13-; p24: P111T, G120N, T178S, E187D, S200A; p6: F15L, A22T, P25L, Q30K, K31N, R33G, A36G, L38P, V39S; p7: R7K, K20R; pro: L10V, N37D, K45R, L63H, K70R; rev: E10A, K14T, I18L, S34N, R50N, A68P, L83I, V108G, T114A; tat: T19A, K24N, Y26F, V36S, Q60H, D64A, P70S, V80E; vif: K33R, N37D, D61E, R67T, E88V, D117E, I124L, T137A, T159I, K160R, T170A, Q178R, C192H; vpr: M19T, D25E, H28N, F69L, Q77S, I83T, G86R, V89G, G94S; vpu: V10A, K31R, L33V, D58E, S62E, V65A, E66K, -73H, -75D, D78G"}}}, {"name": "EU110094", "node_attrs": {"div": 0.14629999999999999, "accession": "EU110094", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2002.0}, "Strain_name": {"value": "ML2014"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["-217T", "C362T", "A369C", "A380G", "A412G", "G428A", "A437G", "A460G", "A491G", "C496A", "G518A", "A520C", "C539T", "A540G", "A541G", "A548G", "C558T", "G562A", "T571A", "A576G", "T635G", "G693A", "A697C", "G706A", "C707T", "G709A", "G716T", "T774C", "G776C", "T808C", "T926C", "C1118T", "C1137T", "T1187C", "G1278A", "A1291C", "G1328A", "A1433C", "A1452G", "G1488A", "A1495G", "G1498A", "A1526G", "G1553A", "A1601G", "A1619G", "T1646C", "T1682C", "G1777A", "-1786C", "C1825T", "C1826A", "G1907A", "C1913T", "T1954C", "G1981A", "C1985T", "T1986C", "A2032G", "T2080C", "A2161G", "G2215C", "A2241G", "T2369C", "C2392A", "G2456C", "A2462G", "G2463A", "C2485T", "G2566A", "C2575T", "A2626G", "G2656A", "A2693G", "A2828C", "A2841G", "A2887G", "A2969G", "T2978C", "A3097G", "G3200A", "G3217A", "G3250A", "A3292G", "A3334G", "T3355G", "G3370A", "T3399A", "G3409A", "T3414A", "C3433T", "G3442A", "G3448A", "C3449T", "G3463A", "T3496C", "T3497A", "A3524G", "G3631A", "A3655G", "C3712T", "A3715G", "A3718G", "G3907A", "C3940T", "C3943T", "A3955G", "A3988G", "C3995T", "A4060G", "A4078G", "A4093G", "G4151T", "T4153C", "A4178G", "G4186A", "T4191A", "A4407G", "T4412C", "G4539A", "G4597A", "A4650C", "C4679T", "A4694G", "T4701C", "G4708A", "A4717T", "C4724T", "C4728A", "T4738C", "G4774A", "G4779A", "G4786A", "A4815C", "G4838A", "A4861G", "A4865C", "T4891A", "C4899A", "G4968A", "G4975A", "G4981A", "T4982A", "A4994C", "T5003C", "A5005G", "T5016C", "C5022A", "G5040A", "G5075A", "A5089T", "C5134T", "G5140A", "G5143A", "T5162C", "T5194C", "C5221T", "G5226C", "A5285G", "T5294C", "C5303T", "C5306T", "A5352C", "A5376G", "T5424C", "C5479A", "A5480C", "G5534A", "A5557G", "T5602G", "A5607G", "T5611A", "C5612A", "C5615T", "T5616G", "G5620C", "G5635A", "C5653T", "C5659A", "A5702G", "A5710G", "G5712A", "A5720G", "C5727T", "A5738G", "C5792G", "C5795G", "C5797A", "T5802C", "T5807C", "-5811G", "-5824A", "G5830A", "G5839T", "A5845G", "A5849T", "G5861A", "A5866C", "T5911C", "G5915A", "C5922G", "A5950C", "G5954C", "C6023T", "A6030C", "G6133A", "C6148T", "A6158C", "A6164G", "-6165A", "C6166A", "-6167A", "C6172T", "-6174A", "-6177A", "T6178G", "-6180G", "A6182G", "C6189T", "T6193G", "T6196G", "-6198G", "-6199T", "A6200G", "-6201G", "C6202G", "-6224G", "-6225A", "-6226A", "G6267A", "A6276G", "A6281C", "T6306C", "T6307A", "G6326A", "-6328G", "A6329G", "G6336A", "T6337C", "G6338A", "-6340G", "G6379A", "A6382G", "C6412A", "G6442A", "A6456G", "G6457A", "A6476G", "G6572A", "A6575G", "G6593A", "A6594G", "C6607T", "C6632T", "C6637T", "A6649T", "A6654C", "C6660T", "A6734G", "T6735A", "A6736C", "A6748T", "A6754G", "G6771C", "A6773G", "G6779A", "A6781T", "A6786C", "A6790G", "A6791G", "A6810C", "A6821-", "A6825T", "C6826A", "T6828G", "A6833-", "A6834-", "A6854G", "A6858G", "T6860C", "T6863G", "A6945G", "-6955G", "-6956A", "-6957G", "-6958T", "-6959A", "-6962G", "-6963A", "-6964C", "-6966C", "-6967T", "-6968A", "-6969C", "-6970C", "-6972A", "-6973A", "-6975C", "-6976A", "-6977A", "-6978T", "-6982A", "A6996T", "-6998T", "A7001G", "C7014A", "A7063G", "T7095C", "A7107C", "T7150A", "A7151G", "G7152A", "A7154G", "A7158G", "T7159G", "C7164A", "G7225A", "T7406G", "A7505C", "A7572G", "A7573G", "T7604C", "C7605A", "T7606G", "A7626T", "G7627A", "G7640A", "A7660G", "A7668G", "G7677A", "A7691C", "G7700C", "T7702A", "A7711G", "G7717A", "G7720A", "C7742A", "C7755A", "A7756G", "A7782C", "A7846G", "A7852G", "C7874T", "G7992A", "A8011C", "A8076G", "C8080A", "A8099G", "T8101G", "G8107A", "A8108C", "T8113G", "A8143G", "T8159G", "C8167T", "G8170A", "T8206C", "G8212A", "G8213C", "A8228G", "C8242G", "A8264C", "A8276C", "G8279T", "A8297G", "C8351A", "T8366C", "C8415T", "C8460T", "T8509C", "G8528A", "A8663G", "G8804A", "C8832T", "G8905A", "G8933A", "A8954G", "C9075T", "C9078T", "-9108C", "A9134-"], "INT": ["I60M", "V126F", "I135V", "F139Y", "K211R", "S255N"], "RT-p51": ["E40D", "K49R", "D121H", "S123D", "T200A", "K249R", "I292V", "A369T", "V435E", "F440Y"], "RT-p66": ["E40D", "K49R", "D121H", "S123D", "T200A", "K249R", "I292V", "A369T", "V435E", "F440Y", "S468T", "T477A"], "gp120": ["A3T", "E4D", "E21K", "T23S", "E34Q", "H57Y", "E59A", "N102H", "T104E", "-111N", "-112V", "-113N", "-114K", "-115S", "-116S", "-117G", "-118E", "R138K", "K141R", "K143Q", "L151P", "N159D", "S161N", "S162K", "N201R", "T208A", "G240K", "K241E", "E247R", "L260F", "T269I", "S306T", "R307G", "E309N", "N311T", "T313A", "E319T", "E323-", "N327-", "-328N", "T334A", "S336P", "S337A", "N364S", "-368S", "-370D", "-372T", "-373K", "-374T", "-375M", "-379S", "-381V", "-382S", "N383D", "T387N", "V414A", "K418T", "N432K", "S433D", "N434D", "N435R", "-436N", "T437N"], "gp41": ["S35A", "K90R", "S101Q", "Q108L", "D113N", "K122R", "S125N", "I130L", "N133Q", "Q147K", "A151E", "N160T", "L191F", "G230D", "H258R", "I266V", "W286G", "L290S", "V304L", "I309V", "I321L", "I325L", "G326C", "I332V", "L340F"], "nef": ["P25S", "H40Y", "V56A", "I133T", "Y135F", "R188H"], "p17": ["K12Q", "K26R", "E42G", "A54K", "M61I", "E62A", "K69G", "L75F", "R76K", "F79Y", "T81A", "A120T", "D121A", "S125N", "K127N"], "p2": ["N9H", "-11A", "-12N", "I13V"], "p24": ["V26A", "G183S", "E187A"], "p6": ["R33K", "P49L"], "p7": ["G8S", "K10R", "R11K"], "pro": ["L10I", "P39S", "L63S"], "rev": ["D7N", "I55L", "L78I", "D84G", "C85G", "E87T", "C89G", "R99G", "V104G", "P107S", "V108I"], "tat": ["Q35T", "R53K", "S61G"], "vif": ["R4K", "N22H", "F39L", "R41K", "Y44F", "H48N", "V51A", "R63K", "V65I", "R67K", "K77Q", "K92R", "R93S", "L102Q", "Q105K", "V128I", "R130K", "R132K", "Q136H", "N140S", "S144P", "Q146K", "A152T", "K168I", "P183L", "G185E", "S186N"], "vpr": ["G41A", "I61V", "I83L", "N91D"], "vpu": ["S2N", "P3L", "E5Q", "V10I", "L18I", "K32R", "K35E", "K38R", "K44R", "S62-", "-73N", "-75N", "D78Y", "N80D", "D81I"]}, "labels": {"aa": "INT: I60M, V126F, I135V, F139Y, K211R, S255N; RT-p51: E40D, K49R, D121H, S123D, T200A, K249R, I292V, A369T, V435E, F440Y; RT-p66: E40D, K49R, D121H, S123D, T200A, K249R, I292V, A369T, V435E, F440Y, S468T, T477A; gp120: A3T, E4D, E21K, T23S, E34Q, H57Y, E59A, N102H, T104E, -111N, -112V, -113N, -114K, -115S, -116S, -117G, -118E, R138K, K141R, K143Q, L151P, N159D, S161N, S162K, N201R, T208A, G240K, K241E, E247R, L260F, T269I, S306T, R307G, E309N, N311T, T313A, E319T, E323-, N327-, -328N, T334A, S336P, S337A, N364S, -368S, -370D, -372T, -373K, -374T, -375M, -379S, -381V, -382S, N383D, T387N, V414A, K418T, N432K, S433D, N434D, N435R, -436N, T437N; gp41: S35A, K90R, S101Q, Q108L, D113N, K122R, S125N, I130L, N133Q, Q147K, A151E, N160T, L191F, G230D, H258R, I266V, W286G, L290S, V304L, I309V, I321L, I325L, G326C, I332V, L340F; nef: P25S, H40Y, V56A, I133T, Y135F, R188H; p17: K12Q, K26R, E42G, A54K, M61I, E62A, K69G, L75F, R76K, F79Y, T81A, A120T, D121A, S125N, K127N; p2: N9H, -11A, -12N, I13V; p24: V26A, G183S, E187A; p6: R33K, P49L; p7: G8S, K10R, R11K; pro: L10I, P39S, L63S; rev: D7N, I55L, L78I, D84G, C85G, E87T, C89G, R99G, V104G, P107S, V108I; tat: Q35T, R53K, S61G; vif: R4K, N22H, F39L, R41K, Y44F, H48N, V51A, R63K, V65I, R67K, K77Q, K92R, R93S, L102Q, Q105K, V128I, R130K, R132K, Q136H, N140S, S144P, Q146K, A152T, K168I, P183L, G185E, S186N; vpr: G41A, I61V, I83L, N91D; vpu: S2N, P3L, E5Q, V10I, L18I, K32R, K35E, K38R, K44R, S62-, -73N, -75N, D78Y, N80D, D81I"}}}]}, {"name": "A1_NODE_0000033", "node_attrs": {"div": 0.10795999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "C435T", "G562A", "C606A", "C713T", "C767T", "C1220T", "A1289T", "C1403T", "T1439C", "C1550T", "A1719C", "G2566A", "A2693G", "G2710A", "A2829T", "A3043G", "C3475T", "C3542T", "G3630A", "G3925A", "C4579T", "A4695G", "A4995G", "A5030G", "A5059G", "G5086A", "T5102C", "T5160C", "G5161A", "G5167A", "T5179G", "G5534A", "A5548G", "A5806C", "G5956T", "G6029A", "T6196C", "-6198C", "-6201C", "-6203G", "-6206G", "-6207G", "-6215A", "-6218G", "A6333G", "G6391A", "G6457T", "G6578A", "A6583G", "A6653G", "C6758T", "G6771A", "A6821G", "A6858G", "-6962A", "-6963G", "-6966C", "-6969G", "-6970G", "-6973T", "A6985-", "C7008-", "A7160G", "G7628A", "G7677A", "A7690G", "T7796A", "C7801A", "G8050A", "C8080A", "A8104T", "T8348G", "G8388A", "G8409A", "A8469G", "C8741T", "C8812A", "G8870A", "A8929G", "C8934A", "T8947A"], "INT": ["N134D"], "RT-p51": ["T200A", "Q245V"], "RT-p66": ["T200A", "Q245V", "H483Y", "R512K"], "gp120": ["E59K", "E64D", "M133V", "E158-", "V242I", "N267D", "H302Y", "S306N", "N378-"], "gp41": ["N133D", "S165T", "N166K", "N302S"], "nef": ["V16I", "A23T", "I43V", "T157N", "L198M", "F202Y"], "p17": ["R76K"], "p6": ["I14L"], "rev": ["D7N", "L78I", "S86C"], "tat": ["N23S", "R53K", "T58A"], "vif": ["Q80H", "R132S", "T137A", "K158R", "R167K", "C192H"], "vpr": ["M19T", "D25E", "T63I"]}, "labels": {"aa": "INT: N134D; RT-p51: T200A, Q245V; RT-p66: T200A, Q245V, H483Y, R512K; gp120: E59K, E64D, M133V, E158-, V242I, N267D, H302Y, S306N, N378-; gp41: N133D, S165T, N166K, N302S; nef: V16I, A23T, I43V, T157N, L198M, F202Y; p17: R76K; p6: I14L; rev: D7N, L78I, S86C; tat: N23S, R53K, T58A; vif: Q80H, R132S, T137A, K158R, R167K, C192H; vpr: M19T, D25E, T63I"}}, "children": [{"name": "FJ623478", "node_attrs": {"div": 0.14630999999999997, "accession": "FJ623478", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06KECst_019"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "C426A", "A480G", "G498T", "A499T", "A530G", "C531T", "G542T", "A549T", "T571A", "G607A", "A619G", "A674G", "G717A", "A762G", "A818C", "C827T", "G899A", "T992A", "G1019A", "G1031A", "C1061T", "C1065G", "A1066C", "G1078C", "A1263T", "G1268A", "G1271T", "T1280G", "A1307G", "T1316C", "G1350T", "A1382C", "T1421C", "C1449A", "C1523T", "C1541T", "G1553A", "G1586A", "G1687A", "C1693T", "G1697A", "C1706T", "T1722C", "T1724C", "A1738G", "G1760A", "G1777A", "G1785A", "-1786A", "A1857G", "C1957T", "G1998A", "A2056G", "C2071A", "A2241G", "A2243G", "T2257C", "A2377C", "C2434T", "A2462G", "G2463A", "C2464T", "G2602T", "A2630G", "T2638C", "T2689C", "G2727A", "C2728A", "T2737G", "A2743C", "G2755A", "A2788G", "G2830A", "A2845T", "T2890C", "C2953T", "A2975C", "T2978A", "G3010A", "A3058T", "T3059G", "G3085A", "A3088G", "A3142G", "G3200A", "G3217A", "G3221A", "T3222C", "T3225C", "G3236A", "T3349C", "G3379A", "T3399C", "T3414A", "G3442A", "G3490A", "T3517C", "A3524G", "C3541T", "T3551C", "G3595A", "A3622G", "A3637C", "C3668T", "T3757A", "C3773T", "A3775G", "G3877A", "G3916A", "T3924C", "C4072T", "G4092C", "G4109A", "G4195A", "A4293G", "G4294A", "A4498G", "C4534T", "A4561G", "G4573A", "T4609C", "A4696G", "G4737A", "T4738C", "T4742C", "A4784T", "T4805G", "A4806C", "A4819C", "C4820T", "A4826T", "A4861G", "C4898T", "T4910C", "T4916C", "C4925T", "C5056A", "C5062G", "T5073C", "T5078A", "T5084C", "G5087A", "A5090G", "A5112G", "G5143A", "C5186A", "A5227G", "A5233G", "C5248T", "A5290G", "A5305G", "G5359C", "T5371G", "C5412T", "G5437C", "G5448A", "T5466C", "A5480C", "G5482A", "T5483A", "T5484A", "G5545A", "A5563G", "T5611C", "G5620C", "C5641T", "G5652T", "C5653G", "T5654G", "C5659A", "A5665T", "A5702G", "G5712A", "A5715G", "G5718A", "C5727T", "G5747C", "C5789A", "G5800A", "-5809G", "-5810G", "-5811G", "G5839A", "A5840T", "A5866C", "G5915A", "A5955C", "A5964G", "C5974T", "A6022G", "A6024C", "G6028A", "G6046C", "T6064C", "C6148T", "A6158C", "-6165C", "-6167A", "-6174A", "-6177A", "-6180T", "C6184T", "A6186G", "C6189G", "G6195C", "-6199T", "-6204A", "-6205A", "-6208A", "-6214A", "-6216T", "-6217G", "-6219G", "-6220G", "-6222A", "A6232G", "A6251G", "A6276G", "T6295C", "G6303A", "A6304G", "A6327G", "-6328T", "-6340C", "G6425A", "C6469T", "C6499T", "C6505T", "A6575C", "T6582G", "A6594C", "G6611A", "C6632T", "G6635A", "C6637T", "T6676C", "A6684G", "A6691G", "C6692T", "G6693C", "C6729T", "A6730G", "A6734G", "T6735A", "C6752A", "A6764C", "T6766G", "G6774A", "T6776A", "G6779C", "A6789T", "A6811C", "-6835G", "T6860C", "C6875A", "T6916C", "A6947C", "G6948A", "G6954A", "-6955C", "-6956C", "-6957T", "-6958T", "-6959A", "-6964C", "-6967T", "-6968T", "-6972A", "G6980-", "A6981-", "T6988C", "C6991T", "-6994G", "A6996G", "G6997A", "-6998T", "-6999C", "-7008G", "C7018T", "C7024T", "C7084T", "G7101A", "G7106A", "A7112G", "C7114T", "A7132G", "A7158G", "A7162T", "C7164A", "C7324T", "C7328A", "C7393T", "C7463A", "A7505C", "A7533G", "T7624C", "C7625T", "G7627T", "G7633C", "T7642C", "C7645T", "G7688C", "C7703T", "A7711G", "C7723A", "C7747G", "T7751C", "A7773G", "A7800G", "C7843T", "T7870A", "A7885C", "G7915A", "A7943G", "A7998G", "T8016C", "A8029G", "G8030A", "C8037T", "C8044G", "C8051A", "T8155C", "G8170A", "T8171C", "A8173G", "A8188G", "A8204G", "C8221T", "A8273G", "G8274C", "A8276G", "C8291A", "T8323A", "G8354A", "A8363G", "T8390C", "C8415G", "T8451C", "-8487G", "-8488G", "-8489G", "A8493-", "A8494-", "T8495-", "C8507T", "A8519G", "A8531C", "A8570G", "C8585T", "C8595T", "G8597T", "C8688A", "A8739G", "C8740T", "T8746A", "C8768T", "T8770A", "A8794C", "G8873A", "A8886C", "G8905A", "A8965-", "C8966-", "A8967-", "G8968-", "A8969-", "A8970-", "G8971-", "T8972-", "T8973-", "G8974-", "C8975-", "T8976-", "G8977-", "A8978-", "C8979-", "A8980-", "G8981-", "G8982-", "G8983-", "A8984-", "C8985-", "T8986-", "T8987-", "T8988-", "C8989-", "C8990-", "G8991-", "C8992-", "T8993-", "G8994-", "G8995-", "G8996-", "G8997-", "A8998-", "C8999-", "T9000-", "T9001-", "T9002-", "C9003-", "C9004-", "A9005-", "G9006-", "G9007-", "G9008-", "A9009-", "G9010-", "G9011-", "T9012-", "G9013-", "T9014-", "G9015-", "G9016-", "T9017-", "T9018-", "T9019-", "G9020-", "G9021-", "G9022-", "C9023-", "G9024-", "G9025-", "A9026-", "G9027-", "T9028-", "T9029-", "G9030-", "G9031-", "G9032-", "G9033-", "A9034-", "G9035-", "T9036-", "G9037-", "G9038-", "C9039-", "T9040-", "A9041-", "A9042-", "C9043-", "C9044-", "C9045-", "T9046-", "C9047-", "A9048-", "G9049-", "A9050-", "T9051-", "G9052-", "C9053-", "T9054-", "G9055-", "C9056-", "A9057-", "T9058-", "A9059-"], "INT": ["M50T", "G106A", "V112I", "K173R"], "RT-p51": ["K49R", "I50V", "S123D", "E169D", "I179V", "S211K", "F214L", "V245I", "E250D", "T294P", "L295M", "S322A", "A369T", "V376T", "M377T", "V381I", "V435A", "F440Y"], "RT-p66": ["K49R", "I50V", "S123D", "E169D", "I179V", "S211K", "F214L", "V245I", "E250D", "T294P", "L295M", "S322A", "R366K", "A369T", "V376T", "M377T", "V381I", "V435A", "F440Y", "T477A", "E514D"], "gp120": ["E4D", "E21K", "E34A", "K37R", "I56M", "H57P", "N102H", "-105N", "-106V", "-107N", "-108V", "-109T", "-110S", "-111N", "-112V", "-113T", "-114S", "-115S", "-116N", "-117A", "-118T", "-126M", "K141R", "R150K", "P155Q", "N157D", "N159-", "N160-", "S161-", "S162-", "A191T", "G240E", "K241Q", "K243R", "E247A", "A253T", "L260F", "N261T", "K277R", "R280S", "T292M", "Q300K", "N304Q", "R307K", "S308T", "E309Q", "K312I", "E319N", "S336P", "L341I", "T359S", "S360T", "G361Y", "F363P", "-368N", "-370S", "-372G", "-373S", "-374N", "T380-", "N383-", "T385S", "R416K", "N420D", "N435S", "-436D", "T437N"], "gp41": ["L9I", "L54M", "K77R", "Q108Y", "D109N", "E110D", "S125N", "N140K", "D148E", "N157S", "K166R", "R214G", "D232G", "V238A", "A243T", "A245V", "D247E", "I301V", "R324A", "I325V", "L330I"], "nef": ["P25A", "N49G", "E63D", "L85F", "H116N", "I133V", "F143Y", "D151A", "K182Q", "R188H"], "p17": ["K18R", "L31M", "S49G", "E55L", "P66S", "K69N", "T72S", "F79Y", "R91K", "K95R", "N124S", "V128I"], "p2": ["-10T", "-11N"], "p24": ["I11V", "E29D", "H87Q", "M96I", "Q112A", "G116A", "T178S", "E180D", "A207S"], "p6": ["S3N", "P5L", "F15L", "E20G", "R33K", "A36N"], "pro": ["K14R", "K20R", "N37D", "C67Y"], "rev": ["K32R", "S61D", "R66G", "A68K", "S103P", "V108T", "I109V", "T114A"], "tat": ["A21P", "Q35P", "V36K", "K63E"], "vif": ["M8T", "N37G", "V51T", "H73Q", "T74P", "D78A", "K92R", "T157K", "T159R", "K176E", "S186N"], "vpr": ["Q3R", "H28N", "R85P", "V89G"], "vpu": ["S2L", "L4P", "E5L", "L16G", "L18I", "I20L", "K32R", "R47T", "E63A", "V65I", "-68G", "D79Y", "N80D", "D81L"]}, "labels": {"aa": "INT: M50T, G106A, V112I, K173R; RT-p51: K49R, I50V, S123D, E169D, I179V, S211K, F214L, V245I, E250D, T294P, L295M, S322A, A369T, V376T, M377T, V381I, V435A, F440Y; RT-p66: K49R, I50V, S123D, E169D, I179V, S211K, F214L, V245I, E250D, T294P, L295M, S322A, R366K, A369T, V376T, M377T, V381I, V435A, F440Y, T477A, E514D; gp120: E4D, E21K, E34A, K37R, I56M, H57P, N102H, -105N, -106V, -107N, -108V, -109T, -110S, -111N, -112V, -113T, -114S, -115S, -116N, -117A, -118T, -126M, K141R, R150K, P155Q, N157D, N159-, N160-, S161-, S162-, A191T, G240E, K241Q, K243R, E247A, A253T, L260F, N261T, K277R, R280S, T292M, Q300K, N304Q, R307K, S308T, E309Q, K312I, E319N, S336P, L341I, T359S, S360T, G361Y, F363P, -368N, -370S, -372G, -373S, -374N, T380-, N383-, T385S, R416K, N420D, N435S, -436D, T437N; gp41: L9I, L54M, K77R, Q108Y, D109N, E110D, S125N, N140K, D148E, N157S, K166R, R214G, D232G, V238A, A243T, A245V, D247E, I301V, R324A, I325V, L330I; nef: P25A, N49G, E63D, L85F, H116N, I133V, F143Y, D151A, K182Q, R188H; p17: K18R, L31M, S49G, E55L, P66S, K69N, T72S, F79Y, R91K, K95R, N124S, V128I; p2: -10T, -11N; p24: I11V, E29D, H87Q, M96I, Q112A, G116A, T178S, E180D, A207S; p6: S3N, P5L, F15L, E20G, R33K, A36N; pro: K14R, K20R, N37D, C67Y; rev: K32R, S61D, R66G, A68K, S103P, V108T, I109V, T114A; tat: A21P, Q35P, V36K, K63E; vif: M8T, N37G, V51T, H73Q, T74P, D78A, K92R, T157K, T159R, K176E, S186N; vpr: Q3R, H28N, R85P, V89G; vpu: S2L, L4P, E5L, L16G, L18I, I20L, K32R, R47T, E63A, V65I, -68G, D79Y, N80D, D81L"}}}, {"name": "AY322185", "node_attrs": {"div": 0.14694999999999997, "accession": "AY322185", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 1997.0}, "Strain_name": {"value": "ML013_2"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G121T", "G272A", "T303A", "-304A", "-305A", "A371G", "G378T", "A380G", "G386A", "T467C", "A500G", "A513G", "T514C", "G524A", "A548G", "A554G", "C558A", "T596C", "T614G", "C636T", "A661G", "T662A", "T698C", "G706A", "A714C", "G1089A", "A1205G", "T1329A", "A1346G", "G1404A", "G1419A", "T1451G", "A1475G", "T1484C", "C1490T", "G1493A", "C1610A", "T1646C", "T1653C", "A1673G", "A1742G", "G1743A", "-1786C", "C1826G", "G1839A", "A1841G", "G1846A", "C1903T", "G1907A", "A1927G", "A1932G", "G1963A", "A2126G", "T2251A", "A2293G", "T2365C", "A2374G", "G2456C", "T2612G", "G2686A", "A2704G", "C2806T", "A2828G", "A2846C", "G2847A", "A2852G", "A2881G", "A3124G", "A3136G", "C3140T", "A3192G", "G3398A", "A3400G", "C3577T", "G3631A", "G3643A", "C3649T", "C3682T", "A3715G", "A3718G", "T3754C", "G3770A", "G3772A", "G3787A", "A3796G", "G3869C", "G3907A", "A3937G", "C3943T", "A3955G", "A4060G", "A4078G", "G4151T", "A4178G", "G4186A", "T4247C", "G4366A", "A4410C", "C4421A", "A4423C", "C4529A", "G4539A", "A4564G", "A4646C", "A4717T", "A4745G", "G4766A", "T4769G", "G4774A", "A4826C", "C4911T", "G4923A", "C4925A", "T5084G", "A5094G", "G5128A", "C5134A", "C5221T", "C5242T", "T5281A", "T5294C", "C5334T", "A5335C", "G5375A", "C5393A", "T5415C", "C5432A", "A5446C", "A5447C", "A5461G", "A5462T", "C5551T", "G5635A", "G5687C", "A5689C", "A5699G", "T5704G", "A5748G", "G5775A", "T5791G", "C5792A", "A5793T", "C5795A", "C5797T", "T5799G", "T5801C", "T5802A", "G5803A", "G5805A", "G5808T", "-5813T", "-5814G", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824A", "T5944G", "C5949G", "C5958A", "A5963G", "A5964T", "C5998T", "C6023G", "G6046T", "A6059G", "T6100C", "C6110G", "G6121A", "-6165G", "C6166T", "-6167G", "T6169G", "-6174T", "T6175G", "A6176G", "-6177T", "-6180C", "C6181T", "A6182G", "C6187T", "A6188G", "A6191G", "-6199C", "C6202T", "-6204C", "-6205C", "-6208T", "-6209A", "-6210C", "-6211C", "-6212A", "-6213C", "-6214C", "-6216C", "-6217T", "-6219C", "-6220C", "-6222T", "-6223T", "-6224G", "-6225G", "-6226A", "A6229G", "A6230G", "T6231A", "A6233G", "A6234T", "A6236G", "C6238G", "T6239A", "T6242G", "C6243G", "T6246G", "A6248T", "T6252C", "G6253C", "C6255G", "C6256T", "A6259G", "A6262T", "A6266T", "A6273C", "A6277T", "C6278A", "A6279C", "A6283G", "T6285A", "A6286G", "T6290G", "T6297C", "T6298A", "T6299G", "A6309T", "A6311C", "A6316T", "A6318C", "A6320C", "A6323G", "A6324C", "-6328A", "A6329G", "A6335G", "T6337G", "A6339G", "-6340G", "T6341G", "A6344T", "A6346T", "T6356A", "A6360G", "C6364T", "T6365A", "A6367C", "G6368T", "A6378C", "G6379A", "A6484G", "A6488C", "A6489G", "G6490T", "A6573G", "A6615G", "A6618G", "C6636A", "A6647G", "A6648T", "A6668G", "A6679C", "A6684C", "A6765C", "A6773G", "G6774C", "A6781G", "A6790C", "A6805G", "G6806A", "C6807G", "T6808G", "A6809G", "C6812G", "A6818C", "C6824T", "-6830G", "-6831T", "-6832G", "-6835C", "A6836-", "A6837-", "C6838-", "A6854G", "T6876C", "G6894T", "T6895G", "T6928C", "C6937T", "G6948T", "T6953-", "G6954-", "-6959G", "T6961C", "-6964A", "-6967G", "-6968G", "A6971C", "-6972C", "-6974G", "-6975A", "-6976T", "-6977G", "-6978G", "-6979C", "-6982T", "A6986-", "A6987-", "T6988-", "A6989-", "G6990-", "C6991-", "A6992-", "C6993-", "G6995-", "A6996-", "G6997-", "A7000-", "A7001-", "A7002-", "T7003-", "G7004-", "A7005-", "C7006-", "A7007-", "T7009-", "A7012T", "A7013G", "T7045A", "G7054A", "A7060G", "A7074T", "C7078T", "A7089C", "A7107T", "A7127T", "A7138G", "G7147T", "T7150C", "G7152A", "A7155C", "C7156A", "A7158T", "T7165C", "G7166-", "A7167-", "A7168-", "A7169-", "C7170-", "C7171-", "G7182A", "G7199A", "C7201T", "A7231G", "A7234G", "A7246G", "C7250A", "G7256T", "G7269A", "A7275G", "G7304-", "C7305-", "A7306-", "G7307-", "T7308-", "T7309-", "C7320T", "T7323C", "T7325C", "A7348T", "G7366A", "C7397A", "A7459G", "A7470G", "T7630G", "T7642A", "T7666A", "A7676G", "A7691G", "T7702G", "A7706C", "A7713T", "G7759A", "A7791G", "A7880G", "T7921C", "G7962A", "G7992A", "A8011C", "T8047C", "C8092A", "G8141A", "T8171A", "T8182A", "G8213C", "A8222G", "G8241C", "A8264G", "G8304T", "C8320G", "T8321C", "C8369T", "G8385A", "T8408C", "C8415T", "C8424A", "C8460T", "G8590C", "A8657G", "A8663G", "A8666G", "C8687T", "C8699T", "T8702C", "A8739C", "G8834A", "G8843T", "A8846G", "T8849C", "G8880A", "T8881C", "A8887T", "G8888A", "A8912C", "C8913T", "A8915C", "A8917C", "T9068C", "T9097G", "-9109T", "A9134G"], "INT": ["V32L", "M50I", "I60M", "V126F", "I135V", "E212A", "Q216N", "Q252K", "S255N"], "RT-p51": ["K11E", "D121H", "S173A", "S251H", "T253A", "K366R", "V435M"], "RT-p66": ["K11E", "D121H", "S173A", "S251H", "T253A", "V435M", "V559I"], "gp120": ["A32G", "E34D", "T35K", "K37V", "H57D", "K69E", "Q86E", "N102-", "C103-", "T104-", "E125-", "K127-", "F131H", "N132E", "T134S", "E136D", "R138W", "K140T", "K141N", "Q142T", "V144E", "S146A", "F148S", "Y149D", "D152V", "I153L", "-158S", "N159S", "N160T", "S161T", "Y163-", "R164-", "L165-", "I166-", "N167-", "C168-", "N169-", "T170-", "S171-", "A172-", "Q175P", "K212R", "K243M", "K254R", "N255S", "N261D", "K265V", "N272D", "K277T", "N304T", "R307A", "K312N", "A318R", "Q320E", "H324Y", "K326V", "T334A", "L341P", "S347M", "S365I", "W367D", "-368R", "N369-", "T371-", "-381G", "-382P", "N383D", "D384G", "T385D", "T387A", "N397K", "Y407F", "Q412P", "K418V", "I425L", "S433-", "N434-", "-436T", "T437I", "G443E", "D449N", "L466I", "V468L", "R472K", "K474R"], "gp41": ["A6V", "V7A", "F8L", "Q32K", "K56R", "D109K", "D113E", "D121E", "S125D", "Q129E", "I130V", "D133E", "I135L", "E137V", "D163G", "I193V", "G220E", "G230D", "F263L", "E280K", "L290I", "V304L", "I307V", "G313A", "I321V", "R334I"], "nef": ["E15K", "P25S", "P28T", "H40Y", "G83A", "I133P", "Y135F", "I168M", "V180T", "K182I", "L191F", "K192T"], "p1": ["S8P"], "p17": ["A15S", "I60A", "L75I", "D93E", "N109R", "K127Q"], "p2": ["Q8T"], "p24": ["G120S", "S200T", "G225S", "V230I"], "p6": ["I21M", "A22T"], "p7": ["D48E"], "pro": ["L10V", "I15V", "K45R"], "rev": ["I55L", "S67P", "A68T", "H82N", "G98E", "V108D", "S112T"], "tat": ["P6H", "T19K", "K24P", "K29V", "R57G", "P59S", "E85K"], "vif": ["N37D", "Y44F", "D61E", "R63K", "D113K", "T170A", "R181K", "P183H"], "vpr": ["Q77S"], "vpu": ["V10I", "G27A", "I28L", "K31R", "L33V", "E60D", "L61T", "S62D", "V65A", "E66K", "-69V", "-70E", "-71M", "-72G", "-73N", "-74Y", "-75D", "-76L", "-77G", "D81N"]}, "labels": {"aa": "INT: V32L, M50I, I60M, V126F, I135V, E212A, Q216N, Q252K, S255N; RT-p51: K11E, D121H, S173A, S251H, T253A, K366R, V435M; RT-p66: K11E, D121H, S173A, S251H, T253A, V435M, V559I; gp120: A32G, E34D, T35K, K37V, H57D, K69E, Q86E, N102-, C103-, T104-, E125-, K127-, F131H, N132E, T134S, E136D, R138W, K140T, K141N, Q142T, V144E, S146A, F148S, Y149D, D152V, I153L, -158S, N159S, N160T, S161T, Y163-, R164-, L165-, I166-, N167-, C168-, N169-, T170-, S171-, A172-, Q175P, K212R, K243M, K254R, N255S, N261D, K265V, N272D, K277T, N304T, R307A, K312N, A318R, Q320E, H324Y, K326V, T334A, L341P, S347M, S365I, W367D, -368R, N369-, T371-, -381G, -382P, N383D, D384G, T385D, T387A, N397K, Y407F, Q412P, K418V, I425L, S433-, N434-, -436T, T437I, G443E, D449N, L466I, V468L, R472K, K474R; gp41: A6V, V7A, F8L, Q32K, K56R, D109K, D113E, D121E, S125D, Q129E, I130V, D133E, I135L, E137V, D163G, I193V, G220E, G230D, F263L, E280K, L290I, V304L, I307V, G313A, I321V, R334I; nef: E15K, P25S, P28T, H40Y, G83A, I133P, Y135F, I168M, V180T, K182I, L191F, K192T; p1: S8P; p17: A15S, I60A, L75I, D93E, N109R, K127Q; p2: Q8T; p24: G120S, S200T, G225S, V230I; p6: I21M, A22T; p7: D48E; pro: L10V, I15V, K45R; rev: I55L, S67P, A68T, H82N, G98E, V108D, S112T; tat: P6H, T19K, K24P, K29V, R57G, P59S, E85K; vif: N37D, Y44F, D61E, R63K, D113K, T170A, R181K, P183H; vpr: Q77S; vpu: V10I, G27A, I28L, K31R, L33V, E60D, L61T, S62D, V65A, E66K, -69V, -70E, -71M, -72G, -73N, -74Y, -75D, -76L, -77G, D81N"}}}]}]}, {"name": "A1_NODE_0000034", "node_attrs": {"div": 0.10235999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A389G", "C435T", "C1220T", "A1442G", "A1642G", "G1687A", "C1693T", "T1723G", "C1787T", "C4006T", "A4176G", "G4264A", "G4294A", "T4585C", "T5415C", "T5436A", "G5437C", "C5491T", "T5613G", "C5659T", "G5712A", "-5809G", "-5810G", "-5811G", "-6222A", "A6318C", "G6605A", "A6809G", "-6982G", "-6984C", "G6995-", "T7642A", "G7980A", "T8323A", "T8495C", "T9097G"], "INT": ["N134G"], "gp120": ["D251N", "K418E"], "gp41": ["D109E", "G226D", "R324G"], "nef": ["P25A", "I133T", "Y135F"], "p6": ["S3N", "P5L"], "pro": ["N37D"], "tat": ["A21P", "N23S"]}, "labels": {"aa": "INT: N134G; gp120: D251N, K418E; gp41: D109E, G226D, R324G; nef: P25A, I133T, Y135F; p6: S3N, P5L; pro: N37D; tat: A21P, N23S"}}, "children": [{"name": "AF457079", "node_attrs": {"div": 0.14307999999999998, "accession": "AF457079", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2000.0}, "Strain_name": {"value": "KSM4030"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C426A", "A461C", "G495A", "A513G", "C522A", "G524A", "C558A", "A569G", "T571A", "T596C", "C606A", "T614G", "T635C", "C636T", "A669C", "A697C", "G717A", "C722T", "A762G", "C767T", "C827T", "C845A", "C851T", "T892C", "C902T", "T926G", "G1016A", "C1040T", "A1056G", "A1070G", "C1094T", "A1208G", "A1242G", "A1298G", "T1362A", "A1412G", "A1448G", "C1449A", "G1472A", "G1486A", "G1498A", "A1532G", "T1559C", "C1610T", "G1657A", "A1670G", "C1692T", "G1694A", "A1719G", "T1720A", "T1724G", "G1725A", "G1731A", "A1772C", "A1781G", "A1783C", "-1785G", "-1786A", "G1794A", "G1852A", "A1857G", "A1894T", "C1957T", "C1960T", "C2062T", "C2071T", "C2095T", "G2111A", "A2127C", "A2154G", "G2156A", "A2185G", "A2191G", "C2211A", "A2273G", "A2281T", "G2311A", "C2326T", "G2332A", "A2347T", "A2350G", "T2356C", "A2386C", "G2389A", "C2392T", "T2476C", "A2482G", "C2499T", "A2615C", "A2625G", "G2656A", "T2659C", "A2665G", "A2699G", "A2704G", "A2713G", "G2727A", "C2728T", "C2776T", "G2794A", "G2809A", "C2818A", "A2828C", "C2831T", "G2837A", "A2839C", "A2845C", "G2914A", "T2935C", "A2937G", "A2975C", "G3029A", "A3091G", "T3184C", "A3199G", "A3215G", "A3216C", "G3217A", "T3225A", "A3292G", "G3370A", "C3376T", "A3395C", "T3399A", "G3401A", "C3405T", "G3427A", "C3433T", "G3442A", "G3463A", "C3475T", "A3524G", "C3577T", "G3631A", "G3643A", "T3644A", "G3675A", "A3715G", "A3718G", "T3754C", "G3770A", "G3772A", "A3796G", "T3856C", "G3859A", "G3952A", "A3961G", "C4076A", "C4146G", "G4151T", "T4153C", "G4195A", "A4213G", "G4228A", "A4498G", "C4534T", "C4715T", "G4727A", "A4735G", 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"A8701T", "T8702C", "G8717T", "G8816A", "C8825T", "G8873A", "T8883C", "C8913T", "G8971A", "T8972G", "T9040C", "A9042G", "G9097A", "-9108C"], "INT": ["A21T", "I31V", "L45V", "P90S", "L234I", "D270N"], "RT-p51": ["K11Q", "T39A", "E40D", "F214L", "E245V", "D324E"], "RT-p66": ["K11Q", "T39A", "E40D", "F214L", "E245V", "D324E", "L452I", "Q507H", "I526V"], "gp120": ["A2T", "K37Q", "N52D", "I56L", "H57Q", "E64N", "T104S", "N105D", "-107R", "N108G", "-109E", "-110N", "-111I", "-112T", "-114I", "-115R", "-116G", "-117E", "-118N", "-119I", "-120T", "-121E", "-122L", "-123K", "-124E", "-126M", "M133I", "V144R", "P155Q", "S160Y", "S181T", "A196V", "K199R", "D202E", "K212G", "L237V", "E239T", "E241R", "K243M", "V253I", "L260F", "P263T", "E265S", "N267T", "T269I", "N272S", "T275S", "R276I", "K277E", "V279I", "A288S", "Y290H", "A291G", "Q300K", "N304V", "R307G", "K309Q", "N311E", "K312R", "Q315L", "R322S", "K323E", "H324Y", "K326E", "N358D", "G361N", "S365N", "N369-", "T371-", "-379Y", "-381E", "N383S", "D384P", "T385N", "V402T", "Q412K", "N420T", "T422S", "N432T", "S433G", "-436T", "T437S", "G443T"], "gp41": ["V2A", "G3L", "I4-", "I24M", "T25A", "Q32N", "Q39R", "V72L", "K90R", "S107T", "L118M", "D129Q", "N133D", "N160S", "S165T", "N166K", "K172R", "I193V", "D232G", "R276Q", "I307T", "G324R", "R334T", "L340F"], "nef": ["R22N", "A25S", "Y120F", "Q125H", "R196Q"], "p17": ["K26N", "L31M", "S49G", "Q59R", "I60A", "M61I", "F79Y", "Q90H", "I92M", "V94I", "I107L", "K114E", "N124D", "S126N", "Q130R"], "p2": ["V7A"], "p24": ["I11V", "S14A", "H87Q", "M96L", "P111L", "M118I", "D128N", "R132Q", "D152E", "G183A", "E187Q", "R203K", "G225S"], "p6": ["C15F", "A22T", "D32G", "N47S"], "p7": ["R7K"], "pro": ["D37N", "K57R", "L63P"], "rev": ["E10A", "K14T", "S92F", "Q95E", "K115Q"], "tat": ["Q60H", "V69I"], "vif": ["K50R", "I57V", "H73Q", "R92K", "I98V", "Q102W", "D117E", "Q127R", "T155K", "T159I", "T170A", "P183H", "G185E"], "vpr": ["R36G", "I61V"], "vpu": ["L2Q", "L5E", "V10A", "I13V", "V21I", "L33I", "R37K", "I65V", "-69N", "D78-"]}, "labels": {"aa": "INT: A21T, I31V, L45V, P90S, L234I, D270N; RT-p51: K11Q, T39A, E40D, F214L, E245V, D324E; RT-p66: K11Q, T39A, E40D, F214L, E245V, D324E, L452I, Q507H, I526V; gp120: A2T, K37Q, N52D, I56L, H57Q, E64N, T104S, N105D, -107R, N108G, -109E, -110N, -111I, -112T, -114I, -115R, -116G, -117E, -118N, -119I, -120T, -121E, -122L, -123K, -124E, -126M, M133I, V144R, P155Q, S160Y, S181T, A196V, K199R, D202E, K212G, L237V, E239T, E241R, K243M, V253I, L260F, P263T, E265S, N267T, T269I, N272S, T275S, R276I, K277E, V279I, A288S, Y290H, A291G, Q300K, N304V, R307G, K309Q, N311E, K312R, Q315L, R322S, K323E, H324Y, K326E, N358D, G361N, S365N, N369-, T371-, -379Y, -381E, N383S, D384P, T385N, V402T, Q412K, N420T, T422S, N432T, S433G, -436T, T437S, G443T; gp41: V2A, G3L, I4-, I24M, T25A, Q32N, Q39R, V72L, K90R, S107T, L118M, D129Q, N133D, N160S, S165T, N166K, K172R, I193V, D232G, R276Q, I307T, G324R, R334T, L340F; nef: R22N, A25S, Y120F, Q125H, R196Q; p17: K26N, L31M, S49G, Q59R, I60A, M61I, F79Y, Q90H, I92M, V94I, I107L, K114E, N124D, S126N, Q130R; p2: V7A; p24: I11V, S14A, H87Q, M96L, P111L, M118I, D128N, R132Q, D152E, G183A, E187Q, R203K, G225S; p6: C15F, A22T, D32G, N47S; p7: R7K; pro: D37N, K57R, L63P; rev: E10A, K14T, S92F, Q95E, K115Q; tat: Q60H, V69I; vif: K50R, I57V, H73Q, R92K, I98V, Q102W, D117E, Q127R, T155K, T159I, T170A, P183H, G185E; vpr: R36G, I61V; vpu: L2Q, L5E, V10A, I13V, V21I, L33I, R37K, I65V, -69N, D78-"}}}, {"name": "KT022370", "node_attrs": {"div": 0.15292999999999998, "accession": "KT022370", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05KE185405V4"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "A461C", "T485G", "A499T", "A516C", "A533G", "A540C", "C558G", "G562A", "C606A", "A653G", "T662G", "G686A", "G690A", "A715C", "C719T", "C765T", "C823G", "G829A", "A1022G", "C1062A", "A1074T", "G1089A", "C1118A", "C1136T", "C1243T", "T1362C", "T1422C", "T1451G", "G1476A", "C1490T", "G1498A", "T1502G", "-1503A", "-1504T", "-1505T", "A1673G", "A1709G", "G1718A", "T1724C", "C1756T", "A1771G", "G1773A", "G1794A", "T1796C", "G1845A", "A1932G", "A2059G", "A2119G", "A2170G", "C2263T", "C2299T", "G2311A", "A2317G", "T2356C", "G2389A", "A2422G", "C2456T", "A2462G", "G2463A", "T2476C", "A2482G", "G2710A", "C2776T", "A2788G", "C2831T", "G2847A", "A2881C", "C2885T", "G2914A", "A2928G", "A2975C", "T2978C", "T3002C", "C3055T", "A3091G", "G3094A", "A3099G", "C3100T", "G3127C", "C3140T", "G3226A", "A3334T", "T3343C", "C3376T", "G3385A", "T3399C", "G3439A", "G3483A", "A3522G", "A3538G", "C3541A", "A3543T", "T3544C", "C3550T", "T3638G", "A3665G", "T3742C", "G3787A", "G3859A", "G3916A", "C3922T", "A4111G", "T4135C", "G4186A", "A4213G", "A4254G", "A4315C", "A4384G", "T4412C", "C4501T", "C4650A", "T4656G", "A4664G", "A4687G", "A4696G", "T4697G", "T4701G", "T4702C", "A4733T", "T4742C", "T4799C", "A4808C", "C4820T", "G4864A", "A4891T", "A4988C", "A4995G", "T5018C", "A5024G", "A5051G", "C5056A", "G5075A", "G5094A", "A5119G", "T5194C", "T5286C", "C5292T", "C5294T", "G5359A", "C5415T", "G5418A", "G5463A", "T5466C", "T5484A", "A5499G", "G5546C", "A5563G", "-5612C", "G5613T", "G5619A", "G5620C", "A5622T", "C5625T", "G5673C", "T5688C", "A5733G", "G5747A", "C5756A", "T5781G", "T5791G", "G5805A", "-5812G", "A5843G", "C5859T", "A5865G", "T5881G", "G5893C", "T5899A", "G5917T", "A6024C", "A6086G", "G6121A", "A6131C", "T6142G", "A6158C", "A6164G", "-6165T", "A6168-", "T6169-", "-6180T", "C6184T", "A6185G", "C6190A", "-6198C", "-6199C", "-6201C", "-6202A", "-6204C", "-6205C", "-6208A", "-6210A", "-6213T", "-6214A", "-6215A", "-6216C", "-6218G", "-6219A", "-6220C", "A6222G", "-6223T", "A6226T", "A6230C", "A6234G", "A6276C", "C6278A", "A6281C", "A6283G", "T6322A", "A6323G", "A6330G", "A6333G", "A6335G", "G6336A", "-6340A", "G6368A", "G6379A", "A6388T", "C6397T", "A6456G", "A6500T", "T6562C", "C6636T", "G6640T", "A6647G", "A6664G", "C6670T", "A6684G", "G6716A", "T6733A", "G6743C", "A6744C", "T6745G", "A6754T", "A6765C", "G6774A", "A6788G", "A6789C", "C6797A", "C6800A", "A6814G", "-6831G", "T6849G", "A6850G", "C6862T", "G6871A", "A6877G", "C6949A", "A6950G", "G6954A", "G6955C", "-6957C", "-6959A", "-6963G", "-6964C", "-6966C", "-6967T", "-6968T", "-6969A", "-6970C", "-6971A", "-6972A", "-6973T", "-6974A", "-6975A", "-6976C", "-6977G", "-6978C", "-6979A", "G6982A", "-6983C", "-6994G", "-6995C", "A7000C", "C7006A", "C7064A", "G7102C", "A7107T", "A7129T", "G7147A", "A7158G", "A7160G", "A7162G", "A7163G", "T7165G", "C7170T", "A7183G", "C7201T", "C7264T", "G7269A", "A7290G", "A7297G", "A7348C", "A7373G", "A7396G", "G7534A", "C7603T", "G7628A", "A7642G", "G7657A", "A7687T", "G7729A", "A7781G", "G7790A", "C7792A", "A7801C", "C7843T", "T8008A", "A8032G", "C8103T", "A8130G", "C8146G", "C8147T", "C8149G", "A8151G", "G8152A", "T8153C", "A8154T", "T8155G", "C8156G", "T8157G", "A8173G", "T8182C", "T8196A", "G8216A", "C8232T", "G8255C", "A8273G", "C8293T", "C8320T", "T8366C", "A8372T", "C8415G", "T8450C", "T8456G", "A8469G", "G8484-", "T8485-", "A8486-", "-8490G", "-8491T", "-8492C", "C8495T", "C8498T", "C8507T", "G8528A", "A8531C", "G8588A", "C8593G", "C8595A", "G8597A", "T8611A", "A8643G", "G8732A", "A8739C", "T8766C", "G8767T", "C8771T", "A8780G", "G8807A", "A8874G", "A8882G", "G8888A", "G8905A", "A8912C", "A8917G", "A8922T", "G8923T", "A8929G", "C8934A", "T8935A", "G8936A", "T8972A"], "INT": ["K160R", "I203M"], "RT-p51": ["H121Y", "S123D", "S251N", "Q278R", "T294P", "D335G", "E344D", "M377I", "E413D", "V435A"], "RT-p66": ["H121Y", "S123D", "S251N", "Q278R", "T294P", "D335G", "E344D", "M377I", "E413D", "V435A", "R463K", "K476R", "Y483L", "S515A", "K524E"], "gp120": ["A2V", "E4G", "E21D", "H57P", "T78A", "K93Q", "N102H", "N105T", "I106A", "-107K", "-109I", "-110T", "-111G", "-112D", "-113S", "-114D", "-126L", "K127R", "K141T", "Q142K", "K143Q", "N157D", "N159S", "S161D", "A172T", "N201R", "T216S", "E239K", "N255T", "N261V", "E262D", "K277R", "A288T", "D297P", "Q300N", "N304T", "R307E", "K312A", "Q315K", "Q316K", "K326G", "I332R", "W367Y", "-368N", "-370S", "-379S", "-381Q", "-382D", "D384A", "V402A", "Q404K", "K416N", "E418V", "N432K", "N435S", "-436E", "T437G", "T439I", "R472K", "E479G"], "gp41": ["I4L", "I24V", "E109N", "G113E", "N160D", "D163K", "A267V", "L277S", "K283R", "Y284L", "L285G", "I298N", "D305N", "A310V", "V318L"], "nef": ["D38E", "I43V", "E63D", "A84G", "L85I", "F90Y", "I101V", "T133P", "C142L", "R178G", "M182I", "R188H", "K192R", "R194L", "L198K"], "p1": ["K4R"], "p17": ["E42D", "E55V", "M61L", "K69Q", "L75V", "R76K", "N109K", "A119T", "K127T"], "p2": ["H9Q"], "p24": ["H12Y", "A31G", "S33N", "P111T", "I115L", "G120S", "A171V"], "p6": ["P25L", "K31R", "D32N", "L38P", "V39S"], "p7": ["G4S", "R11K", "I12M", "-13I"], "pro": ["G16E", "K45R"], "rev": ["E11Q", "S54T", "T62A", "P100V", "Q101E", "V102T", "S103G", "I109V", "S112P", "N116K"], "tat": ["G57A", "K63E"], "vif": ["H22N", "L24V", "K34R", "N37R", "F39A", "R93K", "Q102L", "E134D", "T137A", "T157K", "Q178R"], "vpr": ["I61T", "T63I", "R85Q"], "vpu": ["L4P", "R47K", "A50E", "D58E", "E60D", "L61T", "S62D", "-79Y"]}, "labels": {"aa": "INT: K160R, I203M; RT-p51: H121Y, S123D, S251N, Q278R, T294P, D335G, E344D, M377I, E413D, V435A; RT-p66: H121Y, S123D, S251N, Q278R, T294P, D335G, E344D, M377I, E413D, V435A, R463K, K476R, Y483L, S515A, K524E; gp120: A2V, E4G, E21D, H57P, T78A, K93Q, N102H, N105T, I106A, -107K, -109I, -110T, -111G, -112D, -113S, -114D, -126L, K127R, K141T, Q142K, K143Q, N157D, N159S, S161D, A172T, N201R, T216S, E239K, N255T, N261V, E262D, K277R, A288T, D297P, Q300N, N304T, R307E, K312A, Q315K, Q316K, K326G, I332R, W367Y, -368N, -370S, -379S, -381Q, -382D, D384A, V402A, Q404K, K416N, E418V, N432K, N435S, -436E, T437G, T439I, R472K, E479G; gp41: I4L, I24V, E109N, G113E, N160D, D163K, A267V, L277S, K283R, Y284L, L285G, I298N, D305N, A310V, V318L; nef: D38E, I43V, E63D, A84G, L85I, F90Y, I101V, T133P, C142L, R178G, M182I, R188H, K192R, R194L, L198K; p1: K4R; p17: E42D, E55V, M61L, K69Q, L75V, R76K, N109K, A119T, K127T; p2: H9Q; p24: H12Y, A31G, S33N, P111T, I115L, G120S, A171V; p6: P25L, K31R, D32N, L38P, V39S; p7: G4S, R11K, I12M, -13I; pro: G16E, K45R; rev: E11Q, S54T, T62A, P100V, Q101E, V102T, S103G, I109V, S112P, N116K; tat: G57A, K63E; vif: H22N, L24V, K34R, N37R, F39A, R93K, Q102L, E134D, T137A, T157K, Q178R; vpr: I61T, T63I, R85Q; vpu: L4P, R47K, A50E, D58E, E60D, L61T, S62D, -79Y"}}}]}, {"name": "A1_NODE_0000038", "node_attrs": {"div": 0.11063999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A480G", "A697C", "G1498A", "A1783T", "T1787A", "G2710A", "C3542T", "C3682T", "A4294G", "A4878G", "G5534A", "T6193C", "A6200-", "A6221G", "A6276G", "G6336-", "G6635A", "A6647G", "G6689A", "C7124A", "A7161G", "A7641G", "G8050A", "C8595G"], "gp120": ["K141R", "N159S", "V279I", "L424I"], "gp41": ["L265S"], "nef": ["G83A", "L85V", "Y120F", "D151E"], "p1": ["K4R"], "p17": ["S49G", "D121A"], "p7": ["R11K"], "rev": ["D7S", "A68T"], "tat": ["R53K"], "vif": ["I98V"]}, "labels": {"aa": "gp120: K141R, N159S, V279I, L424I; gp41: L265S; nef: G83A, L85V, Y120F, D151E; p1: K4R; p17: S49G, D121A; p7: R11K; rev: D7S, A68T; tat: R53K; vif: I98V"}}, "children": [{"name": "FJ623475", "node_attrs": {"div": 0.15427999999999997, "accession": "FJ623475", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06KECst_006"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "C393A", "A425C", "C426A", "G438A", "A447G", "G524A", "C531T", "A554G", "A566G", "T572C", "C587T", "C588G", "A678G", "C688A", "T698C", "A715C", "C719T", "C851T", "A866G", "T992G", "G993A", "C994T", "A995G", "T1001A", "A1017C", "A1070G", "G1078C", "A1093C", "C1094G", "A1101G", "T1143C", "G1199A", "A1307G", "T1325C", "A1349T", "A1350T", "G1586A", "A1607G", "C1610T", "C1613T", "A1689G", "G1695A", "A1742G", "C1745A", "C1775T", "A1776G", "-1785C", "-1786C", "C1792T", "A1849G", "G1963A", "A1968G", "A1982G", "A2002G", "A2007G", "G2008A", "C2071T", "T2080C", "T2101A", "A2154G", "G2215A", "A2233G", "C2299T", "T2323C", "A2327C", "T2365C", "T2369C", "C2392A", "A2422G", "T2453C", "A2455G", "C2456T", "A2461G", "A2462G", "G2463A", "C2488A", "T2497C", "A2560G", "A2579T", "T2581C", "A2593G", "T2631C", "C2635T", "C2694T", "A2722G", "G2727A", "T2737C", "A2828G", "C2831T", "G2833A", "A2842G", "G2847A", "T2908C", "G2909C", "A2923T", "A2974G", "A2975G", "G2980A", "G3037A", "C3100T", "T3132A", "A3151G", "G3169A", "G3188A", "G3208A", "T3225G", "G3236A", "A3264G", "A3272G", "A3274G", "A3279G", "T3355A", "A3454G", "C3475T", "C3541T", "G3595A", "T3598C", "A3601G", "G3643A", "T3652C", "G3664A", "C3691T", "A3706G", "A3733G", "C3751T", "T3755A", "A3761G", "G3769A", "G3859A", "G3869A", "A3886G", "A3964G", "G3989A", "T3990C", "T3994C", "C3995A", "G3997A", "A4102T", "A4111G", "A4130C", "G4131C", "G4145A", "C4146G", "G4195A", "T4198C", "G4243A", "A4264G", "C4381T", "A4384G", "A4432T", "T4441A", "A4474G", "A4546T", "G4549A", "A4561G", "C4579T", "C4650A", "A4687G", "T4691A", "C4715T", "A4717T", "A4721G", "G4774A", "T4912A", "G4913A", "T4938A", "A4964G", "A4988C", "A4993C", "A5033T", "C5034T", "A5065G", "G5094A", "C5116A", "G5143A", "T5221C", "A5285G", "A5291T", "C5292T", "C5306T", "G5375A", "G5386A", "A5431G", "C5445T", "G5448C", "T5467A", "A5481G", "G5482C", "A5535G", "A5548C", "A5556G", "G5561A", "G5565A", "G5566A", "T5602G", "-5612G", "G5619A", "G5620C", "A5622C", "A5632G", "T5659A", "G5673A", "C5727T", "T5731C", "T5778C", "A5796G", "G5805A", "A5806C", "-5824A", "C5862T", "C5884A", "A5957G", "C5958A", "A5963C", "G6044A", "G6046T", "T6100C", "C6115T", "T6134C", "C6139T", "T6163C", "-6165A", "C6166G", "-6167G", "T6169G", "-6170G", "-6171T", "-6172T", "-6180T", "C6184A", "A6185G", "A6188G", "C6190A", "T6196C", "-6198C", "-6220G", "-6223A", 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"A7234G", "A7240G", "A7296G", "A7312G", "C7324T", "G7333A", "A7348C", "A7396G", "C7463A", "T7489A", "C7528T", "A7533G", "T7630G", "T7675C", "G7688C", "C7690A", "C7703T", "G7759T", "A7782C", "A7801T", "G7835A", "C7843T", "A7846G", "T7870A", "T7877G", "A7880T", "A7903G", "T7930C", "A7931C", "A7936G", "A7938G", "T7948A", "A8086G", "T8097C", "A8104C", "G8105A", "C8112T", "T8164C", "T8171G", "T8196C", "G8208A", "C8221T", "G8240A", "G8241A", "G8254A", "T8348C", "G8349A", "A8372C", "G8402A", "A8405G", "C8413A", "T8414G", "G8484A", "T8485C", "T8505G", "G8506T", "G8508A", "T8509C", "A8522G", "A8531C", "G8537C", "G8588A", "G8590C", "G8592T", "C8690T", "A8701T", "C8751T", "T8795A", "A8823G", "C8831T", "T8849C", "A8852G", "A8915T", "G8923T", "A8929G", "G8945C", "C8990T", "A8998G", "A9042G"], "INT": ["V32I", "V72T", "L74I", "S119P", "A124S", "I203M", "K219N", "N222K"], "RT-p51": ["K20R", "H121Y", "S123D", "S162C", "I179T", "T200I", "S211N", "S251N", "A272P", "T294A", "F346Y", "V365I", "M377R", "V381I", "K390R", "I393V", "K395R"], "RT-p66": ["K20R", "H121Y", "S123D", "S162C", "I179T", "T200I", "S211N", "S251N", "A272P", "T294A", "F346Y", "V365I", "R366K", "M377R", "V381I", "K390R", "I393V", "K395R", "S554T", "I556V"], "gp120": ["A3V", "T35E", "K37Q", "E64N", "T104K", "N105E", "I106V", "-109V", "-110T", "-111A", "-112A", "-113N", "-114S", "-115T", "-116E", "-117E", "-118M", "-119M", "E125-", "M133I", "L137I", "Q142K", "N157S", "S160T", "S161T", "I173V", "E183H", "N201Q", "E239G", "A253V", "N255T", "P263S", "N267D", "T269I", "K277T", "R280P", "T292I", "D297K", "Q316R", "A318V", "E319T", "H324N", "K326R", "-328T", "K329T", "N334D", "S335K", "S336P", "N358D", "-368G", "N369A", "-372D", "-373S", "-374M", "-375H", "-376G", "-377A", "-379D", "-381E", "-382S", "M398R", "E418K", "N420D", "S433-", "-436D", "T437S", "E481G"], "gp41": ["L54M", "K77R", "D129Q", "L152F", "N160T", "V178I", "S192A", "I193L", "T210P", "N212S", "D215E", "A268T", "T270I", "L290V", "I298T", "G313N", "G324R"], "nef": ["G3S", "M20I", "P24Q", "A25P", "V48T", "-53V", "-54T", "C55-", "V56-", "E63D", "E65D", "A84S", "N161D", "R194I", "E201D"], "p17": ["R30S", "L31M", "V35I", "S38G", "P66S", "L85V", "T115A", "A118E", "N124S", "K127T"], "p24": ["H87Q", "A88M", "M96L", "G116A", "N121T", "I124V", "T207S"], "p6": ["R4G", "E6K", "I21M", "R33G", "-36V"], "pro": ["K14R", "K57R", "I62V", "K70R"], "rev": ["E11D", "K14R", "V16I", "R17K", "Y28P", "K30E", "S34T", "R80G", "S86H", "S106P", "V108G"], "tat": ["V4I", "T19A", "K24N", "C31S", "V36L", "T58P", "S62N", "D64N", "I74T", "Q76R", "T77A", "I80N"], "vif": ["H22N", "K34R", "Y44F", "R63K", "L109Q", "S118T", "E134D", "Q136P", "K160R", "P177H", "S186N"], "vpr": ["I61V", "T63F", "S94N"], "vpu": ["L2W", "L4A", "I9V", "L18I", "M67L", "-69N", "-70Y", "-71D", "-72L", "-73G", "-79D", "D81N"]}, "labels": {"aa": "INT: V32I, V72T, L74I, S119P, A124S, I203M, K219N, N222K; RT-p51: K20R, H121Y, S123D, S162C, I179T, T200I, S211N, S251N, A272P, T294A, F346Y, V365I, M377R, V381I, K390R, I393V, K395R; RT-p66: K20R, H121Y, S123D, S162C, I179T, T200I, S211N, S251N, A272P, T294A, F346Y, V365I, R366K, M377R, V381I, K390R, I393V, K395R, S554T, I556V; gp120: A3V, T35E, K37Q, E64N, T104K, N105E, I106V, -109V, -110T, -111A, -112A, -113N, -114S, -115T, -116E, -117E, -118M, -119M, E125-, M133I, L137I, Q142K, N157S, S160T, S161T, I173V, E183H, N201Q, E239G, A253V, N255T, P263S, N267D, T269I, K277T, R280P, T292I, D297K, Q316R, A318V, E319T, H324N, K326R, -328T, K329T, N334D, S335K, S336P, N358D, -368G, N369A, -372D, -373S, -374M, -375H, -376G, -377A, -379D, -381E, -382S, M398R, E418K, N420D, S433-, -436D, T437S, E481G; gp41: L54M, K77R, D129Q, L152F, N160T, V178I, S192A, I193L, T210P, N212S, D215E, A268T, T270I, L290V, I298T, G313N, G324R; nef: G3S, M20I, P24Q, A25P, V48T, -53V, -54T, C55-, V56-, E63D, E65D, A84S, N161D, R194I, E201D; p17: R30S, L31M, V35I, S38G, P66S, L85V, T115A, A118E, N124S, K127T; p24: H87Q, A88M, M96L, G116A, N121T, I124V, T207S; p6: R4G, E6K, I21M, R33G, -36V; pro: K14R, K57R, I62V, K70R; rev: E11D, K14R, V16I, R17K, Y28P, K30E, S34T, R80G, S86H, S106P, V108G; tat: V4I, T19A, K24N, C31S, V36L, T58P, S62N, D64N, I74T, Q76R, T77A, I80N; vif: H22N, K34R, Y44F, R63K, L109Q, S118T, E134D, Q136P, K160R, P177H, S186N; vpr: I61V, T63F, S94N; vpu: L2W, L4A, I9V, L18I, M67L, -69N, -70Y, -71D, -72L, -73G, -79D, D81N"}}}, {"name": "A1_NODE_0000039", "node_attrs": {"div": 0.11565999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T571A", "T596C", "C1299T", "G1339A", "C1385T", "G1452C", "T1682C", "G1697A", "G1743A", "A1771G", "G1777A", "C1825T", "C2392T", "C2456G", "C2644T", "A2764G", "G2984A", "G3211A", "G3217A", "G3370A", "G3891A", "A4273G", "G4677A", "A5246G", "G5444A", "G5805C", "G5842T", "-6170A", "G6179A", "A6251G", "C6263T", "G6463A", "T6562C", "T6733A", "A6753G", "A6818G", "C7156-", "T7192C", "A8173G", "T8218C", "A8219C", "C8220A", "C8415-", "A8666G", "T8789G", "A8886C"], "INT": ["S39N"], "RT-p51": ["H121D", "E297K"], "RT-p66": ["H121D", "E297K"], "gp120": ["M133V", "D294K"], "gp41": ["N166K"], "p17": ["F79Y"], "p24": ["R203K"], "p6": ["P25L", "K31R", "R33K"], "tat": ["S23N"], "vif": ["V31I"], "vpr": ["N48D"], "vpu": ["E66D"]}, "labels": {"aa": "INT: S39N; RT-p51: H121D, E297K; RT-p66: H121D, E297K; gp120: M133V, D294K; gp41: N166K; p17: F79Y; p24: R203K; p6: P25L, K31R, R33K; tat: S23N; vif: V31I; vpr: N48D; vpu: E66D"}}, "children": [{"name": "FJ623481", "node_attrs": {"div": 0.16107999999999997, "accession": "FJ623481", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06KECst_005"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G378T", "G386A", "T473C", "G495A", "C531T", "T575C", "C606A", "A608G", "C623T", "A653G", "G706A", "A714C", "G717A", "C767T", "A820G", "A914G", "T944A", "C950T", "C1006A", "A1017C", "C1115T", "G1199A", "T1220C", "A1226G", "A1263T", "G1271T", 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"-6830A", "-6831G", "-6832G", "T6849G", "A6850C", "C6919T", "-6956A", "-6957A", "-6958T", "-6959C", "-6962A", "-6963C", "-6964T", "-6965G", "-6966A", "-6967C", "-6974A", "-6975T", "-6976A", "-6977A", "-6978A", "-6979G", "-6983T", "-6994G", "-6995G", "-6998T", "-6999C", "A7002G", "C7006A", "C7019A", "A7063G", "C7087A", "A7089C", "T7095C", "A7101G", "A7127C", "A7129C", "T7153C", "-7156G", "T7159C", "A7162C", "T7165A", "C7170T", "G7190A", "A7196C", "A7238C", "C7264T", "G7307A", "C7324A", "C7328A", "T7406A", "A7419G", "C7561A", "A7590C", "G7627T", "T7666G", "T7681C", "T7692C", "A7700G", "G7712A", "G7717A", "A7734T", "G7735A", "C7742A", "C7747T", "G7773A", "T7783C", "A7800G", "A7822T", "G7862A", "T7913C", "A7929T", "A7938G", "A7980G", "G7992A", "G7997A", "A7998C", "G8001A", "G8017C", "T8047C", "A8093G", "T8097C", "G8110A", "G8152A", "T8153C", "T8182G", "C8183A", "A8188G", "G8208A", "G8254A", "A8264G", "A8271G", "A8273G", "A8275G", "A8288C", "C8293T", "A8329G", "G8330T", "C8331T", "A8396C", "-8415G", "C8424A", "A8446G", "T8471C", "T8485C", "C8495T", "G8532A", "A8549G", "G8555A", "G8590C", "G8637A", "A8656G", "C8661A", "A8693G", "A8701T", "T8702C", "A8718G", "T8720G", "A8762C", "T8779A", "A8780G", "T8795G", "T8813A", "G8834A", "T8849C", "A8882G", "T8883C", "A8887G", "G8894A", "C8903T", "A8915G", "A8917C", "A8929G"], "INT": ["A21T", "G134N", "Q136K", "T218I", "L234I", "I251V", "V259I"], "RT-p51": ["E36D", "E177D", "S211R", "E245N", "A272P", "D312N", "D324E", "S359A", "K366R", "M377L", "V435A"], "RT-p66": ["E36D", "E177D", "S211R", "E245N", "A272P", "D312N", "D324E", "S359A", "M377L", "V435A", "S468P", "K476R", "E514D", "S534A"], "gp120": ["A3V", "E4G", "E21K", "E34D", "K37V", "E59G", "-107M", "N108G", "-109N", "-110S", "-111N", "-112S", "-113T", "-114G", "-115N", "-116S", "-117S", "-118N", "-119T", "-120K", "-121I", "-122E", "-123E", "-124I", "-126M", "Q142R", "V144E", "R150K", "L151I", "I156L", "N157D", "E204Q", "P210E", "T220A", "N251D", "N255T", "N261S", "E262K", "E265Q", "N267K", "S278G", "R280H", "I281L", "Y290F", "A291G", "G293E", "D297N", "Q300S", "K312D", "Q315K", "R322E", "K326R", "I332S", "-368N", "N369H", "-370T", "T371D", "-372I", "-373K", "-376G", "-377S", "-379S", "-381E", "-382S", "N383S", "D384E", "P389T", "Q412P", "V414A", "K416R", "I425L", "N434K", "-436S", "T439I", "D446N", "K462Q"], "gp41": ["V2I", "L9I", "S35T", "Q39R", "N96T", "Q108H", "E109D", "D121E", "I130T", "N133D", "E137K", "K144I", "Q147K", "S157N", "K166R", "V187I", "H209L", "N212S", "D226G", "G230D", "D232T", "R233K", "I264V", "Y284H", "T306H", "I321V", "Q323R", "I329L", "A343F"], "nef": ["E18D", "P28T", "Q35R", "V48-", "N49-", "H50A", "P51N", "S52H", "-53P", "-54S", "E64K", "G99R", "K105R", "Q107K", "N126E", "V146E", "D149E", "K182R", "K192T"], "p17": ["A15S", "A54T", "P66S", "K127Q", "V128I"], "p2": ["H9Q", "-10Q", "A11T"], "p24": ["K30R", "D71E", "P92Q", "M96L", "T178S", "E180D"], "p6": ["N3S", "L5P", "T8S", "I14L", "C15F", "E19-", "I21V", "A22I", "S23A", "-26P", "-36V", "L38S", "P49L"], "pro": ["K14R", "K20R"], "rev": ["S7N", "V16I", "R50N", "E57Q", "S67P", "H82R", "D88N", "V102T", "I109V", "S112E", "T114A"], "tat": ["P21A", "K29E", "G57R", "S62N", "V69I", "I74L", "T77A"], "vif": ["H27Y", "F39Y", "Y44F", "S46C", "V51A", "R67K", "T74P", "D78A", "R92K", "S95I", "L125I", "R132I", "T137A", "N140S", "T170A", "P183R"], "vpr": ["G41A", "I61V"], "vpu": ["P3S", "L4S", "C7W", "G11A", "L18I", "K32R", "D66N", "-69N", "-70Y", "-71D", "-72L", "-73G", "-79Y"]}, "labels": {"aa": "INT: A21T, G134N, Q136K, T218I, L234I, I251V, V259I; RT-p51: E36D, E177D, S211R, E245N, A272P, D312N, D324E, S359A, K366R, M377L, V435A; RT-p66: E36D, E177D, S211R, E245N, A272P, D312N, D324E, S359A, M377L, V435A, S468P, K476R, E514D, S534A; gp120: A3V, E4G, E21K, E34D, K37V, E59G, -107M, N108G, -109N, -110S, -111N, -112S, -113T, -114G, -115N, -116S, -117S, -118N, -119T, -120K, -121I, -122E, -123E, -124I, -126M, Q142R, V144E, R150K, L151I, I156L, N157D, E204Q, P210E, T220A, N251D, N255T, N261S, E262K, E265Q, N267K, S278G, R280H, I281L, Y290F, A291G, G293E, D297N, Q300S, K312D, Q315K, R322E, K326R, I332S, -368N, N369H, -370T, T371D, -372I, -373K, -376G, -377S, -379S, -381E, -382S, N383S, D384E, P389T, Q412P, V414A, K416R, I425L, N434K, -436S, T439I, D446N, K462Q; gp41: V2I, L9I, S35T, Q39R, N96T, Q108H, E109D, D121E, I130T, N133D, E137K, K144I, Q147K, S157N, K166R, V187I, H209L, N212S, D226G, G230D, D232T, R233K, I264V, Y284H, T306H, I321V, Q323R, I329L, A343F; nef: E18D, P28T, Q35R, V48-, N49-, H50A, P51N, S52H, -53P, -54S, E64K, G99R, K105R, Q107K, N126E, V146E, D149E, K182R, K192T; p17: A15S, A54T, P66S, K127Q, V128I; p2: H9Q, -10Q, A11T; p24: K30R, D71E, P92Q, M96L, T178S, E180D; p6: N3S, L5P, T8S, I14L, C15F, E19-, I21V, A22I, S23A, -26P, -36V, L38S, P49L; pro: K14R, K20R; rev: S7N, V16I, R50N, E57Q, S67P, H82R, D88N, V102T, I109V, S112E, T114A; tat: P21A, K29E, G57R, S62N, V69I, I74L, T77A; vif: H27Y, F39Y, Y44F, S46C, V51A, R67K, T74P, D78A, R92K, S95I, L125I, R132I, T137A, N140S, T170A, P183R; vpr: G41A, I61V; vpu: P3S, L4S, C7W, G11A, L18I, K32R, D66N, -69N, -70Y, -71D, -72L, -73G, -79Y"}}}, {"name": "MF109427", "node_attrs": {"div": 0.15575999999999995, "accession": "MF109427", "clade_membership": {"value": "A1"}, "country": {"value": "GB"}, "date": {"value": 2014.0}, "Strain_name": {"value": "13612_1_42.3"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A360C", "C362T", "G378A", "C379A", "G389A", "A417C", "G428A", "G481A", "C482G", "A492T", "C510A", "A511G", "A512G", "A516C", "G518A", "G542A", "C558A", "G562A", "A581T", "A585G", "C586T", "G607A", "A619G", "A654T", "G665A", "A669C", "C679A", "C691T", "G716T", "C719T", "G755A", "A764G", "T771A", "C772A", "C827T", "C830T", "A839G", "T884C", "G899A", "C902T", "A903G", "A932G", "A941G", "T1058C", "A1079G", "G1089A", "A1142G", "T1229C", "C1243T", "C1247A", "G1278A", "G1279A", "A1292C", "A1298G", "C1304T", "A1370G", "G1404A", "T1421G", "C1478T", "A1495G", "T1502C", "A1526G", "T1646C", "G1730A", "C1756T", "C1782G", "T1783G", "G1839A", "G1907A", "C1913A", "G1963A", "T1986C", "A1993G", "A2014C", "T2087C", "T2129C", "A2131G", "G2134A", "G2215T", "A2241G", "A2344G", "G2431A", "G2463A", "C2464T", "A2473G", "G2566T", "A2579G", "G2580A", "A2692G", "A2693G", "G2914A", "A2919G", "C2927G", "A2945C", "A2950G", "A2956G", "G2986A", "G3010A", "C3013T", "G3035A", "A3043T", "T3068C", "A3080G", "A3130C", "A3136G", "A3165G", "A3166G", "G3168A", "G3200A", "G3206T", "C3223T", "A3258G", "A3284G", "C3285T", "G3305A", "A3637G", "G3675A", "T3682G", "G3686A", "C3751T", "T3757A", "C3763T", "G3775A", "A3814G", "G3816A", "G3877A", "C3889T", "A3934G", "A4051G", "A4060G", "C4079T", "G4112A", "G4145A", "C4149T", "T4198A", "C4381T", "A4432T", "T4441A", "A4495G", "G4549A", "C4579T", "A4646C", "T4769-", "G4770-", "T4805C", "T4827C", "T4883C", "G4892A", "C4898T", "G4981A", "C5006A", "A5007C", "A5059G", "T5072G", "A5119G", "G5140A", "G5167T", "T5194C", "T5197G", "T5224G", "G5359C", "T5371C", "T5382C", "C5412T", "C5432T", "C5454T", "T5472C", "C5478T", "A5480C", "T5483C", "A5535G", "A5548C", "C5551T", "A5555C", "A5557G", "T5582A", "C5585G", "A5587G", "T5597-", "T5611-", "G5613-", "A5632G", "C5641T", "A5656C", "T5704A", "G5706A", "A5742G", "A5746C", "G5747A", "G5775T", "G5864-", "A5865-", "A5866-", "C5887T", "C5923T", "A5955T", "A5957C", "A6024C", "T6142C", "T6151C", "A6158C", "T6163C", "-6165A", "-6167G", "-6171A", "-6172G", "-6173G", "-6174A", "-6175C", "T6178C", "-6180T", "A6182T", "C6183A", "C6187G", "C6189T", "G6195C", "T6196G", "A6197-", "G6221-", "A6222-", "G6224-", "A6226-", "A6229C", "A6230C", "C6318A", "A6323-", "A6324-", "T6325-", "A6326-", "A6327-", "A6329-", "A6330-", "T6331-", "A6332-", "A6333-", "T6334-", "A6335-", "T6337-", "G6338-", "A6339-", "G6368A", "T6395A", "C6412T", "A6430T", "T6436G", "C6446T", "A6456G", "G6461A", "A6462C", "G6466T", "C6483T", "A6489C", "A6520G", "C6545T", "C6563T", "A6572G", "A6582C", "C6618A", "A6625G", "A6635C", "C6636T", "C6637T", "G6640A", "C6641G", "G6646A", "A6684G", "T6688C", "A6773G", "T6776C", "A6779G", "A6780C", "C6797T", "A6799C", "G6803A", "G6809A", "A6810C", "T6829C", "C6835G", "-6836A", "-6837A", "-6838C", "T6876C", "T6928C", "C6938T", "G6948T", "C6949A", "C6951A", "T6953-", "G6954-", "G6955-", "A6960-", "C6961-", "G6980-", "G6981-", "G6982-", "C6984-", "A6985-", "A6986-", "A6987-", "T6988-", "A6989-", "G6990-", "C6991-", "A6992-", "C6993-", "A6996-", "G6997-", "A7000-", "A7001-", "A7002-", "T7003-", "G7004-", "A7005-", "C7006-", "A7007-", "C7008-", "T7009-", "A7010-", "T7011-", "A7012-", "A7013-", "C7014-", "T7015-", "C7018T", "C7020A", "A7148-", "A7149-", "T7150-", "A7151-", "G7152-", "T7153-", "A7154-", "A7155-", "A7157-", "A7158-", "T7159-", "A7160-", "G7161-", "A7162-", "A7163-", "C7164-", "T7165-", "T7222C", "G7269A", "A7275G", "G7289C", "A7315G", "T7321G", "G7322T", "G7331A", "G7332C", "A7348C", "G7366A", "C7392T", "A7427G", "A7505C", "T7512A", "A7533G", "G7594A", "C7603T", "T7604A", "C7625G", "A7629C", "G7688C", "C7690A", "A7691T", "C7723T", "C7792T", "T7864C", "G7868A", "G7918A", "C7941A", "A7942G", "A7943-", "A7947G", "T7950C", "G7956A", "G7957T", "G7961A", "A7964G", "A7998G", "C8004T", "A8014G", "T8016A", "G8019A", "G8036A", "C8037T", "A8043G", "A8050C", "G8079T", "G8087A", "C8120T", "G8133A", "T8171C", "A8191G", "T8209C", "T8210C", "C8221T", "G8231A", "C8232T", "A8276G", "T8287G", "C8296T", "A8323C", "G8349A", "G8402-", "A8403-", "G8404-", "A8405-", "C8406-", "G8407-", "T8408-", "G8409-", "C8410-", "T8411-", "C8412-", "C8413-", "T8414-", "G8476A", "T8480C", "C8507T", "T8509C", "G8516A", "A8531T", "G8532-", "A8533-", "G8597A", "C8684T", "T8720C", "C8751T", "A8762G", "T8786A", "G8804A", "A8806G", "G8843A", "G8870A", "A8882C", "C8951G"], "INT": ["R14K", "V113I", "A124T", "A125V", "K219N", "N222K"], "RT-p51": ["E40D", "K49R", "S123N", "S162D", "T200A", "E245K", "K275R", "Q278E", "V314M", "I329V", "K357R", "R358K", "A369T", "V371L", "K388R", "T397V", "D404N"], "RT-p66": ["E40D", "K49R", "S123N", "S162D", "T200A", "E245K", "K275R", "Q278E", "V314M", "I329V", "K357R", "R358K", "R366K", "A369T", "V371L", "K388R", "T397V", "D404N", "G527E", "D529E", "V531I"], "gp120": ["E4N", "N5-", "E34V", "T35P", "H57P", "N102H", "N105D", "I106L", "-107K", "E125-", "K127-", "N128-", "P155Q", "N157-", "N158-", "S159-", "S160-", "S161-", "E162-", "A172T", "S181T", "N201R", "E203T", "E204D", "P210L", "K212T", "K240E", "K243T", "I257M", "N261L", "P263A", "K277R", "K294Q", "Q300R", "R307G", "S308P", "K309A", "Q315Y", "V317I", "E319T", "R322G", "L341P", "S365-", "T366-", "W367-", "N369-", "T371-", "N378-", "T380-", "N383-", "D384-", "T385-", "T387N", "P389Q", "N432-", "S433-", "N434-", "N435-", "T437-", "R472K", "K474R", "E479Q"], "gp41": ["I4M", "V7F", "G10T", "A30V", "S42G", "L70Q", "K77R", "S101T", "Q108E", "E109A", "D129Q", "I130L", "A189T", "P213Q", "R214-"], "nef": ["G3S", "R21-", "R22-", "A23-", "P24-", "A25-"], "p17": ["S9R", "A15K", "K28Q", "G49E", "T53S", "Q59R", "M61L", "L75I", "R76K", "T84V", "R91Q", "K95R", "I107L", "K112Q", "T115K", "A119V", "N124S", "K127N"], "p2": ["-10P", "A11N", "N12-"], "p24": ["I11M", "S14N", "I58V", "G120S", "A171V", "G183N", "E187D", "G225S"], "p6": ["M17I", "A22T", "Q35G"], "p7": ["K10R"], "pro": ["D37N", "P39T", "L63P"], "rev": ["E11D", "K14Q", "Y23N", "Q24E"], "tat": ["T19I", "Q35P", "V36A", "T58P", "P59S", "Q60P", "S61G", "V69E", "P70R", "K71E"], "vif": ["A62-"], "vpr": ["E21D", "H40Q", "R85P", "V89A", "S93P"], "vpu": ["P3L", "L4E", "L5-", "I9V", "I17L", "L33I", "R47Q", "E56D"]}, "labels": {"aa": "INT: R14K, V113I, A124T, A125V, K219N, N222K; RT-p51: E40D, K49R, S123N, S162D, T200A, E245K, K275R, Q278E, V314M, I329V, K357R, R358K, A369T, V371L, K388R, T397V, D404N; RT-p66: E40D, K49R, S123N, S162D, T200A, E245K, K275R, Q278E, V314M, I329V, K357R, R358K, R366K, A369T, V371L, K388R, T397V, D404N, G527E, D529E, V531I; gp120: E4N, N5-, E34V, T35P, H57P, N102H, N105D, I106L, -107K, E125-, K127-, N128-, P155Q, N157-, N158-, S159-, S160-, S161-, E162-, A172T, S181T, N201R, E203T, E204D, P210L, K212T, K240E, K243T, I257M, N261L, P263A, K277R, K294Q, Q300R, R307G, S308P, K309A, Q315Y, V317I, E319T, R322G, L341P, S365-, T366-, W367-, N369-, T371-, N378-, T380-, N383-, D384-, T385-, T387N, P389Q, N432-, S433-, N434-, N435-, T437-, R472K, K474R, E479Q; gp41: I4M, V7F, G10T, A30V, S42G, L70Q, K77R, S101T, Q108E, E109A, D129Q, I130L, A189T, P213Q, R214-; nef: G3S, R21-, R22-, A23-, P24-, A25-; p17: S9R, A15K, K28Q, G49E, T53S, Q59R, M61L, L75I, R76K, T84V, R91Q, K95R, I107L, K112Q, T115K, A119V, N124S, K127N; p2: -10P, A11N, N12-; p24: I11M, S14N, I58V, G120S, A171V, G183N, E187D, G225S; p6: M17I, A22T, Q35G; p7: K10R; pro: D37N, P39T, L63P; rev: E11D, K14Q, Y23N, Q24E; tat: T19I, Q35P, V36A, T58P, P59S, Q60P, S61G, V69E, P70R, K71E; vif: A62-; vpr: E21D, H40Q, R85P, V89A, S93P; vpu: P3L, L4E, L5-, I9V, I17L, L33I, R47Q, E56D"}}}]}]}]}, {"name": "A1_NODE_0000040", "node_attrs": {"div": 0.10897999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G1794A", "A2881G", "G5140A", "G5167T", "T5194C", "T5371G", "G5620C", "A5737G", "-6165C", "C6187T", "-6198G", "-6217G", "-6218G", "-6219A", "-6223G", "-6225A", "A6283G", "-6328A", "G6771A", "-6983T", "A7160G", "A7290G", "A7533G", "A7701G", "A8104C", "C9078T", "A9134G"], "RT-p51": ["E245M"], "RT-p66": ["E245M"], "gp120": ["-126I", "N201K", "S306N", "H324Y", "T380-", "N383-", "S433N", "-436E", "E479G"], "nef": ["V16I"], "vif": ["G185E"], "vpr": ["E21D", "V89G"], "vpu": ["K44E"]}, "labels": {"aa": "RT-p51: E245M; RT-p66: E245M; gp120: -126I, N201K, S306N, H324Y, T380-, N383-, S433N, -436E, E479G; nef: V16I; vif: G185E; vpr: E21D, V89G; vpu: K44E"}}, "children": [{"name": "A1_NODE_0000041", "node_attrs": {"div": 0.11400999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G428A", "C606A", "G667A", "C767T", "C917T", "C1247T", "C1598T", "G2215A", "G2311A", "C2353T", "A2524G", "A2626C", "G2682A", "A3043G", "A3251G", "A3280G", "G3675A", "G3686A", "G5561A", "G5627T", "A5800G", "G5805C", "-5812G", "A6176-", "T6178-", "G6179-", "C6181-", "A6188G", "-6220C", "-6340G", "C6559T", "A6605G", "G6646A", "T6776A", "A6799C", "T6849A", "A6989G", "G6990A", "A7007-", "T7009-", "A7040G", "G7058A", "A7629G", "A7903G", "A7943G", "G7997A", "T8172G", "C8232T", "A8276-", "T8321C", "G8590C", "A8701T", "T8746A", "G8816A", "G8870A"], "RT-p51": ["E177D", "G196E", "T386A"], "RT-p66": ["E177D", "G196E", "T386A", "G527E", "V531I"], "gp120": ["N251D", "S308T", "I332K", "-370S", "I396V", "V402I", "I425L"], "gp41": ["D113E", "N133S", "N166K", "R214G", "D232N", "L290R", "A310V"], "nef": ["G83A", "Y120F", "F135Y", "R196Q"], "p17": ["S111N"], "p6": ["L38P", "V39S"], "rev": ["V16I", "K32R", "R50K"], "tat": ["S62N"], "vpu": ["I65V"]}, "labels": {"aa": "RT-p51: E177D, G196E, T386A; RT-p66: E177D, G196E, T386A, G527E, V531I; gp120: N251D, S308T, I332K, -370S, I396V, V402I, I425L; gp41: D113E, N133S, N166K, R214G, D232N, L290R, A310V; nef: G83A, Y120F, F135Y, R196Q; p17: S111N; p6: L38P, V39S; rev: V16I, K32R, R50K; tat: S62N; vpu: I65V"}}, "children": [{"name": "KT022382", "node_attrs": {"div": 0.15893999999999997, "accession": "KT022382", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06KE452693V6"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G354A", "C362T", "G378A", "C379G", "C426T", "A474G", "A480G", "T486C", "G519A", "C528A", "A540C", "A557G", "G562A", "A576G", "A592G", "T593G", "T596C", "T614A", "A619G", "A642G", "A643C", "A645C", "T655G", "A675G", "G706A", "C719T", "A764T", "T824C", "C851T", "C875T", "C950T", "T962A", "G1016A", "G1089A", "C1137T", "T1143C", "A1242T", "C1243G", "G1302A", "A1350T", "A1359T", "C1403T", "A1412G", "A1452G", "G1486A", "A1495G", "A1546G", "C1550T", "G1552A", "G1562A", "G1586A", "C1721G", "T1741G", "C1756A", "A1758C", "G1763A", "-1785G", "-1786T", "G1835A", "G1963A", "G1981A", "A1993G", "C2062T", "A2126G", "T2195A", "T2302A", "A2371G", "A2419G", "T2452A", "C2464T", "G2566A", "C2575T", "C2589T", "A2641G", "C2653T", "G2656A", "T2679A", "A2680G", "A2699G", "G2727A", "T2770C", "A2828C", "C2831T", "A2872G", "G2881A", "A2884G", "C2941T", "A2959T", "T2978C", "G3010A", "A3025G", "G3029A", "A3088G", "A3103G", "A3192G", "T3222C", "G3283A", "G3316A", "A3340G", "T3399A", "G3448A", "G3523A", "C3542T", "A3547G", "C3610T", "C3628T", "G3630A", "G3643A", "T3644C", "A3654T", "C3668T", "A3706T", "C3751T", "A3768G", "T3847C", "G3907A", "A3979G", "G3989A", "A4084G", "A4105G", "G4109A", "C4144T", "C4162T", "A4270G", "G4276T", "C4288A", "G4354A", "T4435C", "C4501T", "G4549A", "C4576T", "C4650A", "T4706C", "C4715T", "C4761T", "C4807A", "A4878G", "C4914T", "C4925A", "C4939G", "A4956T", "C4978A", "G5013A", "G5014A", "A5026T", "A5033G", "A5037C", "C5050A", "C5056A", "C5062T", "C5111T", "A5113T", "A5119G", "G5143A", "A5148T", "T5260C", "A5268C", "A5284G", "A5285G", "T5354C", "A5355C", "G5359A", "T5382C", "C5384T", "A5396G", "A5436C", "G5448T", "C5479A", "A5480T", "G5482C", "T5483G", "T5484G", "T5491C", "T5492A", "A5495G", "T5515C", "G5545A", "A5548T", "C5585A", "T5611-", "G5613-", "C5614-", "C5615T", "T5617G", "T5618G", "G5619A", "C5620G", "A5621C", "A5623-", "T5624-", "C5625A", "T5626A", "G5639C", "G5652A", "C5653T", "G5673A", "C5678T", "T5684C", "G5687C", "T5695A", "A5696T", "T5705A", "G5706T", "G5718A", "G5749C", "T5791G", "C5792A", "A5794G", "C5795A", "C5797T", "T5799G", "T5801C", "T5802A", "A5804C", "A5806C", "G5808T", "G5809-", "G5810-", "G5811-", "-5813T", "-5814T", "-5815G", "-5816A", "-5817G", "-5818C", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824A", "C5826T", "T5827C", "G5839A", "T5857C", "G5858A", "A5865G", "T5878C", "C5887T", "A5907G", "T5911C", "A5957G", "C5958A", "G6044A", "G6046T", "T6064C", "G6076A", "A6113G", "G6133A", "T6154C", "-6167G", "T6169G", "A6182-", "C6183-", "C6184-", "A6185-", "A6186-", "T6187-", "A6192G", "G6195T", "T6196C", "-6199T", "A6200T", "-6201T", "-6203G", "-6204A", "-6205T", "-6206G", "-6207G", "C6256T", "C6263T", "A6281C", "A6286G", "T6322A", "A6323G", "T6325G", "A6333T", "T6334C", "G6336C", "T6337A", "A6376G", "G6379A", "G6401A", "A6402C", "A6430G", "G6530A", "T6531C", "C6545T", "A6553G", "G6572A", "A6576G", "A6582G", "T6598C", "C6612G", "C6618A", "A6625C", "A6630G", "C6636A", "G6638A", "A6648T", "A6668T", "A6734G", "T6735A", "T6738C", "G6742A", "T6745C", "C6752A", "C6758T", "A6759T", "A6764G", "T6766G", "G6767A", "G6774A", "A6775G", "A6785G", "A6788G", "C6797A", "C6800A", "G6809C", "C6812G", "C6824T", "-6830A", "-6831A", "-6832G", "-6836A", "-6837C", "-6838A", "A6840C", "A6855C", "C6875G", "G6905A", "T6943C", "C6949T", "C6951G", "T6952C", "A6960-", "C6961-", "A6981G", "G6982T", "T6983C", "-6994G", "-6995A", "G6997A", "-6998T", "-6999C", "A7001G", "G7004A", "-7007T", "-7009A", "T7011C", "A7012C", "A7044G", "T7045G", "G7056A", "C7084A", "C7088G", "A7090G", "T7095A", "G7102T", "A7107T", "A7127T", "A7148C", "G7152A", "T7153C", "C7171A", "G7197A", "C7324T", "A7339G", "A7420G", "G7428A", "G7533A", "C7579T", "C7603T", "T7622A", "G7628A", "C7690A", "C7747T", "G7862A", "A7880G", "T7921C", "T8047C", "T8094C", "C8104T", "C8106T", "A8111G", "G8158A", "T8164C", "T8171A", "G8184A", "T8196C", "G8208A", "G8212A", "C8221T", "A8233G", "A8275G", "-8276T", "C8291A", "T8337A", "T8366C", "G8430A", "T8431C", "A8446G", "T8471C", "C8507T", "G8522A", "A8531G", "G8555A", "A8570G", "A8584T", "A8647T", "C8661A", "A8666G", "G8717A", "A8718G", "T8720A", "G8738A", "C8740T", "A8753G", "A8762G", "T8770A", "T8789G", "T8795A", "G8796-", "A8797-", "A8798-", "G8799-", "T8800-", "A8801-", "G8802-", "A8803-", "G8804-", "A8805-", "A8806-", "G8807-", "G8808-", "C8809-", "T8810-", "A8811-", "C8812-", "T8813-", "G8818A", "A8827G", "T8847A", "A8859G", "T8860C", "T8864C", "G8875A", "A8882G", "A8887T", "G8936A", "T8958C", "G8983A", "A9042G"], "INT": ["V72I", "V112I", "E167D", "H171Q"], "RT-p51": ["K11E", "L34I", "T165I", "I195K", "I202V", "S211N", "M245Q", "D312N", "K366R", "V376A", "V435E"], "RT-p66": ["K11E", "L34I", "T165I", "I195K", "I202V", "S211N", "M245Q", "D312N", "V376A", "V435E", "R512K", "Q520L", "K558R"], "gp120": ["A2T", "E4G", "K18R", "T35E", "E64N", "S87G", "N105D", "N108-", "-123K", "-124E", "K143Q", "N159E", "N160K", "S161T", "S162E", "E183T", "V226T", "G240K", "K241G", "K243R", "A253G", "Q259R", "N261D", "E262K", "K265I", "N272Y", "Y290V", "A291T", "T292-", "G293-", "D294-", "I295-", "Q300K", "H302F", "N304E", "V305I", "R307K", "N311D", "K312E", "Q315N", "Q316K", "E319Q", "Q320E", "-328T", "K329T", "N334T", "L341V", "G351R", "T366S", "-368G", "-372T", "-373N", "-374Y", "N378-", "D384-", "T385-", "I386-", "N397R", "R401K", "Q412E", "V414E", "R416N", "E418V", "N432H", "R448K"], "gp41": ["S42N", "S107T", "E109S", "D129E", "V187I", "I193V", "I264T", "A268V", "T270A", "R294Q", "I298T", "G324R", "I325F", "L330I", "L345Q"], "nef": ["I16V", "A25P", "V30T", "Q35R", "Y81F", "Y102F", "Q107K", "N126E", "T133I", "F143Y", "D149E", "D151E", "V153E", "K155-", "A156-", "T157-", "E158-", "G159-", "E160-", "N162S", "C169S", "M173A", "R178K", "K182M", "F202Y", "Y203S", "C206R"], "p1": ["K4R"], "p17": ["V7I", "A15R", "N47D", "S49G", "E62K", "Q65K", "K69Q", "R76K", "T81A", "Y86W", "D93E", "K95R", "K103A", "I104L", "I107R", "K114E"], "p2": ["N9H", "-11A", "-12N"], "p24": ["G120S", "T171C", "V191I", "T207S", "T210S"], "p6": ["I14M", "I21R", "P25Q", "-26Q", "K27-", "-36V"], "p7": ["R7K", "K10R", "N27S", "R29K"], "pro": ["V13I", "K14R"], "rev": ["E11D", "Q24K", "S67P", "S86C", "D88G", "V104M", "S106P", "V108E"], "tat": ["P3L", "N7S", "K24N", "Q35I", "V36R", "L39Q", "N40S", "Y47H", "T58S", "P70Q"], "vif": ["H22N", "T74K", "I98V", "H110Y", "D113E", "S118C", "I124L", "P131H", "G143K", "Y147F", "K151Q", "T155K", "T157K", "T159I", "T170A", "K176M", "Q178R", "S186N", "T188S"], "vpr": ["Q3Y", "Y15F", "E55A", "I60M", "I61V", "I84L", "R85Q", "S93P"], "vpu": ["L2-", "P3-", "I6-", "C7-", "G11A", "T24I", "V26A", "G27A", "Y30I", "L33Y", "E48Q", "S62A", "T63A", "M67L", "-69N", "-74H", "-75D", "-76L", "-77G", "D78N", "-79D", "D81N"]}, "labels": {"aa": "INT: V72I, V112I, E167D, H171Q; RT-p51: K11E, L34I, T165I, I195K, I202V, S211N, M245Q, D312N, K366R, V376A, V435E; RT-p66: K11E, L34I, T165I, I195K, I202V, S211N, M245Q, D312N, V376A, V435E, R512K, Q520L, K558R; gp120: A2T, E4G, K18R, T35E, E64N, S87G, N105D, N108-, -123K, -124E, K143Q, N159E, N160K, S161T, S162E, E183T, V226T, G240K, K241G, K243R, A253G, Q259R, N261D, E262K, K265I, N272Y, Y290V, A291T, T292-, G293-, D294-, I295-, Q300K, H302F, N304E, V305I, R307K, N311D, K312E, Q315N, Q316K, E319Q, Q320E, -328T, K329T, N334T, L341V, G351R, T366S, -368G, -372T, -373N, -374Y, N378-, D384-, T385-, I386-, N397R, R401K, Q412E, V414E, R416N, E418V, N432H, R448K; gp41: S42N, S107T, E109S, D129E, V187I, I193V, I264T, A268V, T270A, R294Q, I298T, G324R, I325F, L330I, L345Q; nef: I16V, A25P, V30T, Q35R, Y81F, Y102F, Q107K, N126E, T133I, F143Y, D149E, D151E, V153E, K155-, A156-, T157-, E158-, G159-, E160-, N162S, C169S, M173A, R178K, K182M, F202Y, Y203S, C206R; p1: K4R; p17: V7I, A15R, N47D, S49G, E62K, Q65K, K69Q, R76K, T81A, Y86W, D93E, K95R, K103A, I104L, I107R, K114E; p2: N9H, -11A, -12N; p24: G120S, T171C, V191I, T207S, T210S; p6: I14M, I21R, P25Q, -26Q, K27-, -36V; p7: R7K, K10R, N27S, R29K; pro: V13I, K14R; rev: E11D, Q24K, S67P, S86C, D88G, V104M, S106P, V108E; tat: P3L, N7S, K24N, Q35I, V36R, L39Q, N40S, Y47H, T58S, P70Q; vif: H22N, T74K, I98V, H110Y, D113E, S118C, I124L, P131H, G143K, Y147F, K151Q, T155K, T157K, T159I, T170A, K176M, Q178R, S186N, T188S; vpr: Q3Y, Y15F, E55A, I60M, I61V, I84L, R85Q, S93P; vpu: L2-, P3-, I6-, C7-, G11A, T24I, V26A, G27A, Y30I, L33Y, E48Q, S62A, T63A, M67L, -69N, -74H, -75D, -76L, -77G, D78N, -79D, D81N"}}}, {"name": "AF457070", "node_attrs": {"div": 0.14576999999999996, "accession": "AF457070", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2000.0}, "Strain_name": {"value": "KNH1211"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C393T", "G394A", "G395T", "G424A", "G495A", "G534T", "A549T", "A566T", "G612A", "A752G", "G776A", "A815G", "A866C", "C897T", "C902T", "G908A", "C1115A", "A1193G", "G1199A", "C1214T", "T1262C", "A1361G", "A1448G", "A1622G", "G1642A", "T1653C", "G1657A", "A1687G", "C1692T", "G1694A", "G1731A", "G1784A", "-1785A", "-1786C", "G1839A", "T1864C", "A1918G", "A1932G", "A2127C", "A2281G", "G2380A", "A2422G", "T2527C", "G2710A", "A2829T", "G2878A", "T2908C", "G2909C", "A2919G", "G2926A", "T2968G", "A3028G", "A3058C", "C3112T", "A3151G", "G3283C", "T3328C", "G3370A", "G3398A", "T3399C", "A3489G", "A3529G", "G3616T", "G3631T", "C3649T", "G3694A", "A3706G", "T3757C", "A3766G", "T3779C", "A3788G", "A3866G", "C3940T", "C3943T", "A4087G", "A4114C", "A4130C", "G4131C", "T4135C", "C4138T", "C4140T", "G4195A", "C4428T", "C4475A", "G4573A", "A4688G", "A4694C", "T4697A", "T4702G", "T4703G", "G4727A", "A4735G", "G4765A", "T4832G", "G4838A", "G4864A", "C4889A", "A4900G", "G4913A", "C4976A", "G4982A", "A5049G", "C5050G", "A5055G", "C5056T", "T5084C", "T5089A", "G5094A", "G5114A", "C5134A", "T5197C", "T5263C", "T5286C", "G5359C", "A5431G", "G5463A", "C5478T", "A5480C", "T5483C", "C5551T", "A5556G", "T5604A", "-5612T", "C5614T", "T5617C", "G5619T", "A5622C", "G5638A", "A5640T", "G5650T", "T5659A", "G5668A", "A5702G", "C5707T", "G5717A", "A5720G", "G5730A", "G5803A", "T5829C", "A5846T", "C5859T", "G5861A", "A5867G", "T5924C", "C5974A", "G6037A", "C6101T", "C6116T", "C6148T", "T6155C", "-6167A", "A6182G", "T6193G", "G6194A", "G6195A", "A6197G", "-6199C", "-6201C", "-6208A", "-6209A", "-6210C", "-6211G", "-6212A", "-6213T", "-6214T", "-6215A", "-6216A", "A6221C", "T6250C", "G6253A", "A6276G", "A6277G", "C6278A", "A6279G", "G6303A", "C6318A", "A6319G", "A6326G", "C6370A", "T6395A", "C6397T", 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S163C, K184Q; p1: S8P, S9N; p17: R20Y, R30K, A54T, A67S, T72S, D93N, N124S; p2: Q8T; p24: E45D, D128E; p6: N3S, G18R, -36T; pro: K45R; rev: K14R, I59V, T62A, A68S, H82N, S86R, P107L, V108T, K115Q; tat: T19A, Q35P, V36A, R57G, P59S, V80I, S81P; vif: K36N, N37K, F39W, K50R, G60E, R93K, D101E, Q105R, S130R, T155G, T157V, I168K, P183H; vpr: A4T, I61T, R85P; vpu: P3S, C7F, G11S, A15S, L18I, V21I, K32R, R37K, K38R, E66N, -79Y, N80D, D81L"}}}]}, {"name": "A1_NODE_0000042", "node_attrs": {"div": 0.11160999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T214G", "C426A", "T698C", "A2462G", "A3808C", "A4717T", "C5585A", "-5612T", "A5622T", "C6148T", "-6177A", "C6184T", "A6192C", "G6338A", "A6339G", "-6340T", "G6490A", "G6638A", "C6729G", "A6730T", "G6732A", "T6733C", "A6779G", "C6824T", "A7107T", "A7642C", "A7801T", "A7980G", "A8273G"], "INT": ["E11D"], "RT-p51": ["S123D"], "RT-p66": ["S123D"], "gp120": ["-106V", "-112T", "N159D", "N261V", "E262K", "T292N", "G293D", "D294I", "E418V"], "gp41": ["K77R", "D226G"], "p17": ["L31M"], "tat": ["P70Q"], "vif": ["Y44F", "T170A"], "vpu": ["N80-"]}, "labels": {"aa": "INT: E11D; RT-p51: S123D; RT-p66: S123D; gp120: -106V, -112T, N159D, N261V, E262K, T292N, G293D, D294I, E418V; gp41: K77R, D226G; p17: L31M; tat: P70Q; vif: Y44F, T170A; vpu: N80-"}}, "children": [{"name": "A1_NODE_0000043", "node_attrs": {"div": 0.11726999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "G386A", "T614G", "G716-", "C719-", "G770A", "T1451-", "-1785A", "A2422G", "C2456T", "G2681A", "G3004A", "A3165G", "G3200A", "G4195A", "C4475A", "T4691A", "G4861A", "C4937A", "G5185A", "C5412T", "C5478T", "T5611C", "C5707T", "G5718A", "C5789T", "A5790G", "-6199T", "-6216T", "C6278A", "A6346G", "C6397T", "A6573G", "C6618A", "C6636T", "G6689A", "G6693A", "C6713A", "A6822C", "C6835G", "-6836A", "-6837A", "A6858G", "-6974A", "-6976T", "-6977G", "-6978A", "G6980A", "-6994T", "C7006G", 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"A7108C", "T7150C", "G7152A", "A7158G", "G7160A", "A7161C", "C7164A", "C7264T", "A7268C", "G7269A", "G7307A", "A7399G", "G7428A", "T7462A", "G7628A", "A7629G", "A7641G", "C7642G", "T7681G", "A7700G", "C7762T", "A7840G", "A7886C", "A7887G", "A7903C", "G7918A", "C8095A", "C8103T", "T8113G", "C8149T", "C8168T", "G8170C", "C8189A", "A8195T", "T8197A", "A8198G", "T8200G", "G8208A", "T8215A", "C8221T", "C8242A", "T8290C", "A8323C", "C8415G", "A8469G", "A8478G", "G8484A", "C8498T", "C8581G", "T8636A", "G8653A", "C8688A", "C8690T", "T8708C", "A8735T", "C8740T", "T8746A", "T8789C", "G8816A", "G8843A", "A8893C", "T8947A", "G8955A", "T8958A", "T8987A", "T9014G"], "INT": ["D41N", "V126F", "G134D"], "RT-p51": ["T39A", "E40D", "I202V", "S211R", "F214L", "M245K", "E250D", "K281R", "T294S", "E399D", "T400I", "V435E"], "RT-p66": ["T39A", "E40D", "I202V", "S211R", "F214L", "M245K", "E250D", "K281R", "T294S", "R366K", "E399D", "T400I", "V435E", "N447Q", "L452I", "L503I", "L517V", "S534A", "V548I"], "gp120": ["A3V", "E21K", "T23I", "A30T", "T35V", "K37M", "H44R", "M67I", "K69E", "N71D", "Q86E", "N102H", "N108-", "-113D", "-114K", "-115S", "-116G", "-123T", "-124D", "I126M", "K141R", "Q142K", "V144E", "V154L", "P155Q", "E158N", "N160E", "S161-", "S162-", "Y189F", "E204N", "K212R", "G240R", "K241E", "E247Q", "K262T", "K265Q", "A288V", "N292S", "Q300K", "N304I", "K309E", "E319T", "R322G", "N334D", "N335R", "L341I", "G351R", "-368N", "-370I", "-372Q", "-373S", "-374N", "-375E", "-376N", "N378-", "D384-", "T385-", "R391K", "M406I", "V414R", "I415V", "R416S", "N435S", "E436T", "T437N", "R472Q"], "gp41": ["V2I", "S42N", "H53Q", "E109S", "D113G", "N126K", "N133G", "N195R", "A267V", "L289F", "L296I", "I298L", "S299G", "L340F"], "nef": ["I43V", "S46G", "V48I", "T80S", "D98E", "R104K", "H116N", "T133I", "F135Y", "K184T", "R196Q", "F202Y", "D205N", "C206S"], "p1": ["K4R"], "p17": ["E42D", "P66S", "E74G", "L75I", "I107M", "Q108K", "Q116P", "N124S", "S126-", "K127-", "V128-"], "p24": ["H12F", "S14A", "A31G", "S33N", "H87Q", "G116A", "T171A"], "p6": ["P25L", "-36S", "P37S", "V39S"], "p7": ["R7G", "Q9R", "R11K"], "pro": ["L10I", "K14R", "G16E", "D37N", "P39S"], "rev": ["D7N", "S8D", "K14R", "A15V", "V16I", "I21V", "Q24A", "L83I", "C89G", "Q101*", "P107L", "V108L", "T114N", "N116I", "*117R"], "tat": ["C27G", "K29Q", "R53K", "Q54R", "R57G", "S61G", "S62N", "N67S", "Q70R"], "vif": ["H22N", "R92K", "T137A", "T155I", "T157K", "K158R"], "vpr": ["I84M", "R85Q", "G89V"], "vpu": ["L5H", "I13L", "I17L", "L18I", "I43V", "E56D", "S62A", "-69N", "-70Y", "D78-"]}, "labels": {"aa": "INT: D41N, V126F, G134D; RT-p51: T39A, E40D, I202V, S211R, F214L, M245K, E250D, K281R, T294S, E399D, T400I, V435E; RT-p66: T39A, E40D, I202V, S211R, F214L, M245K, E250D, K281R, T294S, R366K, E399D, T400I, V435E, N447Q, L452I, L503I, L517V, S534A, V548I; gp120: A3V, E21K, T23I, A30T, T35V, K37M, H44R, M67I, K69E, N71D, Q86E, N102H, N108-, -113D, -114K, -115S, -116G, -123T, -124D, I126M, K141R, Q142K, V144E, V154L, P155Q, E158N, N160E, S161-, S162-, Y189F, E204N, K212R, G240R, K241E, E247Q, K262T, K265Q, A288V, N292S, Q300K, N304I, K309E, E319T, R322G, N334D, N335R, L341I, G351R, -368N, -370I, -372Q, -373S, -374N, -375E, -376N, N378-, D384-, T385-, R391K, M406I, V414R, I415V, R416S, N435S, E436T, T437N, R472Q; gp41: V2I, S42N, H53Q, E109S, D113G, N126K, N133G, N195R, A267V, L289F, L296I, I298L, S299G, L340F; nef: I43V, S46G, V48I, T80S, D98E, R104K, H116N, T133I, F135Y, K184T, R196Q, F202Y, D205N, C206S; p1: K4R; p17: E42D, P66S, E74G, L75I, I107M, Q108K, Q116P, N124S, S126-, K127-, V128-; p24: H12F, S14A, A31G, S33N, H87Q, G116A, T171A; p6: P25L, -36S, P37S, V39S; p7: R7G, Q9R, R11K; pro: L10I, K14R, G16E, D37N, P39S; rev: D7N, S8D, K14R, A15V, V16I, I21V, Q24A, L83I, C89G, Q101*, P107L, V108L, T114N, N116I, *117R; tat: C27G, K29Q, R53K, Q54R, R57G, S61G, S62N, N67S, Q70R; vif: H22N, R92K, T137A, T155I, T157K, K158R; vpr: I84M, R85Q, G89V; vpu: L5H, I13L, I17L, L18I, I43V, E56D, S62A, -69N, -70Y, D78-"}}}, {"name": "KT022381", "node_attrs": {"div": 0.15835999999999997, "accession": "KT022381", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06KE404877V7"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G452A", "A549T", "A557G", "A576G", "A592G", "T596C", "C606A", "G607A", "A619G", "G650A", "T662G", "G667A", "C681A", "C698G", "G706A", "C707T", "G709A", "-716C", "-719G", "C722T", "A752G", "T771A", "C772A", "G785A", "C902T", "A914G", "G920A", "C1013T", "G1089A", "A1205G", "T1244G", "T1253C", "A1359T", "T1427A", "T1444C", "-1451G", "A1452G", "A1463T", "G1487A", "G1493A", "T1511C", "G1562A", "A1565G", "G1586A", "G1589A", "A1619G", "G1642A", "A1643G", "G1661A", "A1703T", "-1786C", "T1787C", "C1792T", "A1794G", "C1831T", "G1835A", "G1839A", "A1857G", "A1932G", "C1985T", "T1986C", "T2110C", "A2127T", "A2128G", "G2215A", "G2311A", "G2343A", "A2350G", "A2374G", "A2398G", "C2485T", "C2499T", "A2519G", "A2524G", "G2566A", "G2578A", "A2593G", "C2605T", "A2627C", "G2683A", "A2698G", "G2707A", "G2761A", "G2794A", "A2829C", "G2909C", "G2926A", "C2944T", "T2968G", "A2974G", "T2978A", "C3023T", "A3096C", "A3161G", "G3168A", "A3192G", "A3196G", "T3207C", "G3208A", "G3211A", "G3217A", "T3222C", "A3224T", "C3357T", "C3359T", "G3398A", "C3405T", "T3418C", "G3442A", "A3451G", "G3467A", "A3489G", "C3533T", "G3630A", "A3665C", "C3682T", "C3712T", "A3748G", "T3757C", "C3808T", "A3835G", "G3859A", "C3889T", "T3904C", "T4039C", "A4060C", "G4063C", "C4076A", "G4112A", "C4132T", "C4162A", "A4270G", "C4381T", "A4402G", "C4428T", "A4525C", "A4567G", "A4577C", "G4582A", "T4606C", "C4665T", "G4677A", "C4724T", "A4735G", "C4759T", "G4774A", "G4786A", "A4787G", "C4820T", "A4862C", "A4865C", "C4871T", "A4878G", "C4889A", "T4910C", "A4966G", "C5006T", "A5030G", "A5119G", "G5128A", "C5168T", "C5186A", "C5194T", "T5206C", "A5246C", "T5293A", "G5296A", "T5382C", "T5491C", "G5546A", "A5556C", "G5599T", "T5602A", "T5626C", "G5627T", "G5643C", "A5694G", "T5704A", "G5706A", "C5727T", "G5730A", "G5739A", "G5784A", "T5787A", "A5788T", "T5799C", "G5805C", "G5809-", "G5810-", "G5811-", "A5825-", "C5826-", "T5827-", "A5828-", "T5829-", "A5846T", "A5865G", "C5884T", "T5924C", "A5955T", "A5957C", "C5958A", "C5974A", "A6050G", "C6067G", "A6088C", "A6131C", "T6155C", "-6167A", "T6169C", "-6170A", "-6171T", "-6172C", "-6173A", "-6174C", "-6175A", "A6177G", "G6179A", "-6180G", "C6183A", "G6194T", "G6195C", "T6196A", "-6201A", "-6203A", "-6204A", "-6205C", "-6206A", "-6207C", "-6208T", "-6209G", "-6210C", "-6211C", "-6212G", "-6213G", "-6214G", "-6215G", "-6220G", "G6223C", "A6230G", "C6263A", "A6277G", "A6279G", "A6286C", "A6326C", "A6329G", "C6369T", "A6394G", "T6395A", "G6461A", "A6502G", "A6505G", "A6508G", "A6576G", "G6578A", "A6582G", "G6593A", "C6601T", "A6605G", "A6609G", "C6612G", "C6637T", "G6646A", "A6653G", "C6666T", "A6668G", "A6669G", "A6684C", "T6730A", "A6732G", "C6733T", "A6734G", "T6735A", "G6742A", "A6754G", "C6758T", "A6759T", "T6766G", "G6774A", "A6780C", "A6781T", "A6788G", "T6794C", "A6796T", "A6799C", "A6814T", "-6838C", "A6844G", "T6863A", "T6895C", "G6906C", "A6947T", "G6948A", "T6952C", "G6954-", "G6955-", "C6961T", "-6962C", "-6963C", "-6964A", "-6965T", "-6966C", "-6967A", "-6968A", "-6969A", "-6970T", "-6971C", "-6972A", "-6973C", "-6975G", "-6979T", "G6990A", "-6995A", "A6996T", "G6997A", "A7000-", "G7033A", "A7044G", "T7045A", "G7058A", "T7059C", "A7099T", "T7107A", "G7145T", "G7146T", "G7147T", "A7151G", "T7153C", "A7155C", "C7156G", "T7165C", "G7166-", "A7167-", "A7168-", "A7169-", "C7170-", "C7171-", "G7182T", "A7297G", "A7315G", "C7324A", "G7440A", "T7444A", "T7466C", "A7470G", "T7489C", "G7513T", "T7624A", "T7630G", "T7699C", "C7702A", "A7773G", "A7799C", "A7800G", "T7801G", "C7874T", "T7879A", "T7913C", "C7926T", "G7947A", "G8036A", "G8050T", "G8133A", "T8171A", "T8172G", "A8188G", "T8218C", "C8232T", "T8251C", "G8254A", "G8255A", "T8257C", "A8272G", "T8278C", "G8335A", "C8336T", "A8338G", "A8378T", "A8399G", "A8405G", "C8415T", "T8477C", "C8496A", "C8507T", "T8509C", "A8525G", "G8555A", "G8590C", "C8595G", "C8603T", "A8643G", "T8644C", "G8654A", "A8666C", "C8669A", "C8699T", "A8701T", "C8741T", "A8780G", "T8849C", "G8870T", "A8886G", "A8887T", "A8893G", "C8900T", "A8915G", "A8922C", "G8923T", "A8929G", "A8930C", "C8992T", "T9012G", "T9029C"], "INT": ["Q95H", "E96D", "L101I", "V113I", "T218I", "I268L"], "RT-p51": ["K11M", "R83K", "D123G", "T135I", "I142V", "I178L", "M245T", "A272P", "D291E", "L295M", "Q334P", "R356G", "R358K", "K366R", "V371A", "V376A", "P421L", "V435I", "A437V"], "RT-p66": ["K11M", "R83K", "D123G", "T135I", "I142V", "I178L", "M245T", "A272P", "D291E", "L295M", "Q334P", "R356G", "R358K", "V371A", "V376A", "P421L", "V435I", "A437V", "V458I", "K465R", "H480Y", "Y483H", "R512K", "K524Q"], "gp120": ["E4G", "E34V", "T35Q", "N66D", "N71K", "K93Q", "N105S", "V106S", "-107N", "-109T", "-110T", "-111S", "T112S", "-113N", "-114N", "-115T", "-116A", "-117G", "-118V", "-119E", "-120N", "-121K", "-122E", "I126V", "L137I", "Q142R", "E158Q", "A172V", "S181T", "E203K", "K241G", "V242I", "K243R", "E247K", "N251D", "N252S", "A253G", "N267D", "P271L", "N272G", "K277T", "N292R", "D293G", "I294E", "H302F", "N304K", "R307K", "K309A", "K312E", "Q315H", "Q320H", "N335S", "S337T", "G351A", "S365Y", "W367Y", "-368P", "N369-", "T371-", "-377S", "-379H", "-380S", "-381D", "-382K", "-383S", "D384N", "N397R", "V402T", "V414I", "R416K", "V418E", "G431F", "N433G", "N434T", "E438-", "T439-", "G443V"], "gp41": ["I4M", "R46K", "K56R", "N133R", "N157S", "N166R", "L191F", "T208I", "G215D", "A245T", "L290R", "N302S", "A310V", "V318I"], "nef": ["A25S", "H50-", "P51-", "S52N", "-53P", "-54S", "V56A", "G83A", "L85V", "I101A", "E108D", "Y120F", "E176D", "K182V", "K184R", "R194L"], "p17": ["T72S", "T81A", "Y86C", "R91K", "K95R", "N109K", "S111N", "Q116K", "D121E", "S125N", "K127N"], "p2": ["V7A"], "p24": ["S14N", "G120S", "T210S"], "p6": ["-36T", "S51L"], "pro": ["V13I", "K20R", "K45R"], "rev": ["E11K", "K14T", "Q24K", "C63Y", "A68S", "V108E", "T114A"], "tat": ["R57E", "Q60H", "P73S", "V80I"], "vif": ["V7A", "H27Y", "V31I", "K50R", "P58L", "R63K", "R67K", "R92N", "R93S", "I98V", "D101E", "Q127R", "Q178R", "R181K"], "vpr": ["H28N", "N48H", "S93P"], "vpu": ["L4P", "C7L", "L33I", "E66D", "G68-", "-79L", "-80G"]}, "labels": {"aa": "INT: Q95H, E96D, L101I, V113I, T218I, I268L; RT-p51: K11M, R83K, D123G, T135I, I142V, I178L, M245T, A272P, D291E, L295M, Q334P, R356G, R358K, K366R, V371A, V376A, P421L, V435I, A437V; RT-p66: K11M, R83K, D123G, T135I, I142V, I178L, M245T, A272P, D291E, L295M, Q334P, R356G, R358K, V371A, V376A, P421L, V435I, A437V, V458I, K465R, H480Y, Y483H, R512K, K524Q; gp120: E4G, E34V, T35Q, N66D, N71K, K93Q, N105S, V106S, -107N, -109T, -110T, -111S, T112S, -113N, -114N, -115T, -116A, -117G, -118V, -119E, -120N, -121K, -122E, I126V, L137I, Q142R, E158Q, A172V, S181T, E203K, K241G, V242I, K243R, E247K, N251D, N252S, A253G, N267D, P271L, N272G, K277T, N292R, D293G, I294E, H302F, N304K, R307K, K309A, K312E, Q315H, Q320H, N335S, S337T, G351A, S365Y, W367Y, -368P, N369-, T371-, -377S, -379H, -380S, -381D, -382K, -383S, D384N, N397R, V402T, V414I, R416K, V418E, G431F, N433G, N434T, E438-, T439-, G443V; gp41: I4M, R46K, K56R, N133R, N157S, N166R, L191F, T208I, G215D, A245T, L290R, N302S, A310V, V318I; nef: A25S, H50-, P51-, S52N, -53P, -54S, V56A, G83A, L85V, I101A, E108D, Y120F, E176D, K182V, K184R, R194L; p17: T72S, T81A, Y86C, R91K, K95R, N109K, S111N, Q116K, D121E, S125N, K127N; p2: V7A; p24: S14N, G120S, T210S; p6: -36T, S51L; pro: V13I, K20R, K45R; rev: E11K, K14T, Q24K, C63Y, A68S, V108E, T114A; tat: R57E, Q60H, P73S, V80I; vif: V7A, H27Y, V31I, K50R, P58L, R63K, R67K, R92N, R93S, I98V, D101E, Q127R, Q178R, R181K; vpr: H28N, N48H, S93P; vpu: L4P, C7L, L33I, E66D, G68-, -79L, -80G"}}}]}, {"name": "A1_NODE_0000044", "node_attrs": {"div": 0.11357999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T1787-", "A2693G", "G3442A", "T3644A", "C4585T", "A4826C", "G6046T", "-6167A", "-6170G", "-6171T", "-6172C", "-6173A", "G6725A", "-6962A", "-6963A", "-6964C", "A7275G", "A7998G", "A8531C", "G8875A"], "RT-p51": ["T200A"], "RT-p66": ["T200A", "L517I"], "gp120": ["E64D", "K265T", "A291T", "K326-", "K474R"], "gp41": ["D232G"], "nef": ["R178K", "L198M"], "p2": ["Q8T"], "p6": ["V39I"], "vif": ["Q80H"]}, "labels": {"aa": "RT-p51: T200A; RT-p66: T200A, L517I; gp120: E64D, K265T, A291T, K326-, K474R; gp41: D232G; nef: R178K, L198M; p2: Q8T; p6: V39I; vif: Q80H"}}, "children": [{"name": "A1_NODE_0000045", "node_attrs": {"div": 0.12624999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C23-", "A159G", "G206A", "C207G", "T213C", "-215A", "-216A", "-217A", "G495T", "A585G", "C586T", "A620G", "G706A", "G709A", "A762G", "A766T", "T771A", "T936C", "C1061T", "A1074C", "G1089A", "G1278A", "T1316C", "C1706T", "C1782-", "A1783-", "G1784-", "C1792T", "G1839A", "G2380A", "A2579T", "G2580A", "C2684A", "A2829T", "A2842G", "G2914A", "G3010A", "T3045C", "A3088G", "C3095A", "G3127A", "A3164C", "G3220A", "T3222C", "G3370A", "A3706G", "T3755A", "G3952A", "C3995A", "G3997A", "A4111G", "C4501T", "T4691A", "T4701G", "A4735G", "G4786A", "A4863G", "G5036A", "G5131A", "C5242T", "C5248T", "T5260C", "A5272G", "T5466C", "C5508A", "G5534A", "G5545A", "A5587C", "T5636C", "A5644G", "G5673A", "T5791G", "A5800C", "T5802G", "-5824A", "A5843T", "G5853A", "C5884T", "T6046C", "T6091C", "-6174A", "G6179A", "C6189T", "T6196G", "A6311G", "C6385T", "C6499T", "G6575A", "G6577A", "G6635A", "A6771G", "C6807G", "-6830G", "-6831G", "-6832G", "T6849A", "-6956G", "-6957A", "-6966C", "-6971A", "-6995G", "-6998T", "-6999C", "A7261C", "G7269A", "G7283A", "T7284C", "G7366A", "G7627A", "T7630G", "C7642G", "C7690A", "A7700C", "G7701A", "C7702A", "A7782G", "C7843A", "A7880G", "C7926T", "T7950C", "G7980A", 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K357Q, V376A; RT-p66: S162Y, Q197K, V317A, K357Q, R366K, V376A, Y483H, S554T; gp120: -107N, I153V, V261T, N306S, -326G, I332K, -380T, -381E, -382S, -383N, R416Q, R472K, V477T; gp41: D113E, D129E, N133Q, N160S, I193V, T208I, L216P, R231K, L290I, A310V, V318I; nef: I16V, E63D, R104K; p17: A54S, T84V, S125N; p24: I11V, H12L, I115L, G120S, G183S; p6: Q35-; rev: D7N, Q24N, V108D; tat: R53K, K71Q, P73S, S81P; vif: F39V, K50R, R67K, R93G, G182D; vpu: V10A, I13V, E60D, L61T, S62D, T63E, I65A, E66T, M67L, G68-, -70E, -72G, -73N, -75D, -76L, -77G, -79V, -80N"}}, "children": [{"name": "KT152839", "node_attrs": {"div": 0.15840999999999997, "accession": "KT152839", "clade_membership": {"value": "A1"}, "country": {"value": "IN"}, "date": {"value": 2009.0}, "Strain_name": {"value": "NARI_FLS_IVC19_1"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["-23A", "A59G", "C155A", "A157T", "C160A", "G386A", "T391C", "G428A", "A480G", "T495C", "G518A", "G524A", "T525A", "A576G", 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"N255T", "K262E", "T265N", "N267T", "T269I", "N272S", "K277T", "A288T", "N292S", "K309A", "Q315H", "Q316D", "A318S", "E319K", "K323T", "Y324H", "K329-", "N334A", "G351R", "-368T", "T371-", "-379N", "T387I", "K393R", "I396V", "Q412K", "N432D", "E436T", "A469S"], "gp41": ["A47E", "I48R", "E49K", "T94P", "S107T", "E109Q", "I130L", "N140T", "G220R", "R221G", "G226D", "K231N", "I235T", "F263L", "I264L", "A268Q", "R327G"], "nef": ["K105R", "F135Y", "T157N", "D174E", "K182Q"], "p17": ["I19T", "M31I", "S49G", "S54P", "M61I", "L64I", "T81A", "D93E", "D121A"], "p2": ["T8Q", "N9H", "-11A", "-12N", "I13V"], "p24": ["S14T", "S41A", "N121T", "R132K"], "p6": ["G18R"], "p7": ["F6Y", "R11K", "R26K", "N27Y"], "pro": ["I15V", "K20R"], "rev": ["E11D", "K14R", "K32E", "R38Q", "K39R", "A47T", "I52V", "T62A", "A68T", "H82T", "S86P", "K115E"], "tat": ["Q17K", "N40K", "T58P", "Q60K", "K63E", "Q78R"], "vif": ["V65E", "R90K", "S130R", "D182A", "P183H", "R184K"], "vpr": ["D21E", "P37E", "E55A", "I61V", "F69L", "V70I", "I84V", "G86R", "R87G", "G94S"], "vpu": ["L4P", "V22A", "Y30C", "K31R", "L34Q", "K35Q", "-69V", "-71R", "-74Y", "D78N"]}, "labels": {"aa": "INT: S24N, V112M, V113I, A124T, G193E, D278N, D286N; RT-p51: K11E, H121Y, M245V, I292V, I341L, M377L, V435L; RT-p66: K11E, H121Y, M245V, I292V, I341L, M377L, V435L, K524E; gp120: E34D, N71K, T104V, N105T, -113N, -114S, -115N, -116V, -123K, -124E, R138I, Y145H, E158K, D159G, N160Q, S161N, S162N, A172T, A191T, K201N, E239N, K241T, N255T, K262E, T265N, N267T, T269I, N272S, K277T, A288T, N292S, K309A, Q315H, Q316D, A318S, E319K, K323T, Y324H, K329-, N334A, G351R, -368T, T371-, -379N, T387I, K393R, I396V, Q412K, N432D, E436T, A469S; gp41: A47E, I48R, E49K, T94P, S107T, E109Q, I130L, N140T, G220R, R221G, G226D, K231N, I235T, F263L, I264L, A268Q, R327G; nef: K105R, F135Y, T157N, D174E, K182Q; p17: I19T, M31I, S49G, S54P, M61I, L64I, T81A, D93E, D121A; p2: T8Q, N9H, -11A, -12N, I13V; p24: S14T, S41A, N121T, R132K; p6: G18R; p7: F6Y, R11K, R26K, N27Y; pro: I15V, K20R; rev: E11D, K14R, K32E, R38Q, K39R, A47T, I52V, T62A, A68T, H82T, S86P, K115E; tat: Q17K, N40K, T58P, Q60K, K63E, Q78R; vif: V65E, R90K, S130R, D182A, P183H, R184K; vpr: D21E, P37E, E55A, I61V, F69L, V70I, I84V, G86R, R87G, G94S; vpu: L4P, V22A, Y30C, K31R, L34Q, K35Q, -69V, -71R, -74Y, D78N"}}}, {"name": "KT152840", "node_attrs": {"div": 0.14860999999999996, "accession": "KT152840", "clade_membership": {"value": "A1"}, "country": {"value": "IN"}, "date": {"value": 1997.0}, "Strain_name": {"value": "NARI_FLS_VB6"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["-24T", "C449T", "A494C", "T596C", "C700A", "A715C", "C772A", "G908A", "A941G", "A968C", "T992G", "A1007C", "G1019T", "T1064C", "G1078C", "C1115A", "A1176G", "G1279A", "G1474A", "A1526G", "T1574C", "C1688A", "C1826A", "G1912A", "C1979G", "A1990G", "A2203T", "G2215A", "A2422G", "A2617G", "G2707A", "C2715A", "T2917C", "C2944T", "G2951A", "G3218A", "A3292T", "G3305A", "T3368C", 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"A7100G", "G7102A", "C7114T", "C7124T", "T7150C", "A7155C", "C7156A", "A7157G", "T7159A", "T7165C", "G7166-", "A7167-", "A7168-", "A7169-", "C7170-", "C7171-", "A7224G", "A7238C", "A7258T", "G7285A", "T7309G", "G7311A", "G7428A", "G7657A", "A7668G", "G7688C", "T7801A", "G7831A", "T7913C", "A7938G", "A7943G", "G7947T", "C7960A", "G7962A", "A7977G", "G7997A", "G7998C", "A8011C", "C8080A", "A8093G", "G8127T", "A8128G", "C8129A", "A8130G", "C8131A", "A8132C", "G8133T", "G8152A", "G8170A", "G8186A", "G8208A", "A8264C", "C8311T", "G8373A", "T8374A", "C8424G", "G8427C", "G8428C", "G8430C", "T8431C", "G8434C", "T8440C", "A8469G", "T8471C", "T8477C", "G8506T", "C8507A", "T8509C", "G8534C", "A8584T", "C8595G", "T8636A", "A8666G", "C8751T", "A8823G", "A8929T", "G9037T", "G9038-"], "INT": ["D11E", "I31V", "D41N", "L45I", "P90S", "L101I", "I141V", "A205S"], "RT-p51": ["E36D", "A207D", "A286T", "Q334K", "V375I", "E399D", "D404N"], "RT-p66": ["E36D", "A207D", "A286T", "Q334K", "V375I", "E399D", "D404N", "V466I", "G527E"], "gp120": ["E4D", "D64N", "K69N", "T78E", "T104S", "-109R", "-110T", "-111N", "T112I", "-113T", "-114G", "-115W", "-116D", "-117R", "-118E", "K141R", "R164K", "S181T", "E203K", "P210L", "G240E", "E247K", "N251D", "A253V", "D297N", "K309G", "L341P", "-368E", "N369Q", "-370N", "T371A", "-373M", "-374Q", "-375E", "-377S", "-379S", "V414I", "Q416E", "N433S", "N434T", "N435E", "E438-", "T439-", "K457R", "K462Q"], "gp41": ["G3E", "S42N", "K122R", "E129Q", "N166K", "M176I", "N212S", "R214G", "G215V", "G220E", "E225G", "G232T", "G275V", "I290V", "E295K", "I321L"], "nef": ["V11K", "A25P", "P28A", "G29P", "V30P", "G31A", "V33A", "I43V", "-53L", "-54A", "C55-", "V56-", "E64D", "Y81F", "L85V", "D98E", "N161D", "R196L"], "p1": ["K4R"], "p17": ["T122K", "K127T"], "p24": ["S14N", "E79D", "H87Q", "M96I", "G116A", "D128E", "S149G", "S183N"], "p6": ["N3K"], "p7": ["R3K"], "pro": ["Q61E", "I64M"], "rev": ["K32R", "R50N", "I55L", "L78I", "T94E", "Q95T", "V102I", "D108S", "G113E"], "tat": ["S23N", "C31S", "S61G", "D64N", "T77A", "V80F", "P84Q", "E85K"], "vif": ["P131H", "R132K", "S186N", "T188I"], "vpr": ["I84T", "R88G", "G89V"], "vpu": ["L4A", "D58E", "-68L", "-71M", "-74L", "D81N"]}, "labels": {"aa": "INT: D11E, I31V, D41N, L45I, P90S, L101I, I141V, A205S; RT-p51: E36D, A207D, A286T, Q334K, V375I, E399D, D404N; RT-p66: E36D, A207D, A286T, Q334K, V375I, E399D, D404N, V466I, G527E; gp120: E4D, D64N, K69N, T78E, T104S, -109R, -110T, -111N, T112I, -113T, -114G, -115W, -116D, -117R, -118E, K141R, R164K, S181T, E203K, P210L, G240E, E247K, N251D, A253V, D297N, K309G, L341P, -368E, N369Q, -370N, T371A, -373M, -374Q, -375E, -377S, -379S, V414I, Q416E, N433S, N434T, N435E, E438-, T439-, K457R, K462Q; gp41: G3E, S42N, K122R, E129Q, N166K, M176I, N212S, R214G, G215V, G220E, E225G, G232T, G275V, I290V, E295K, I321L; nef: V11K, A25P, P28A, G29P, V30P, G31A, V33A, I43V, -53L, -54A, C55-, V56-, E64D, Y81F, L85V, D98E, N161D, R196L; p1: K4R; p17: T122K, K127T; p24: S14N, E79D, H87Q, M96I, G116A, D128E, S149G, S183N; p6: N3K; p7: R3K; pro: Q61E, I64M; rev: K32R, R50N, I55L, L78I, T94E, Q95T, V102I, D108S, G113E; tat: S23N, C31S, S61G, D64N, T77A, V80F, P84Q, E85K; vif: P131H, R132K, S186N, T188I; vpr: I84T, R88G, G89V; vpu: L4A, D58E, -68L, -71M, -74L, D81N"}}}]}, {"name": "A1_NODE_0000046", "node_attrs": {"div": 0.11751999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G389A", "T571A", "G2566A", "G4549A", "C5292T", "G5613T", "T5787C", "-6199C", "-6214A", "A6329G", "G6458A", "G6464A", "A6465C", "A6582T", "C6670T", "T7153C", "C8104A", "G8213C", "A8323G", "A8846G", "G8870T", "A8915C", "A8929G"], "gp120": ["-124E", "K201R", "D202N", "E204T", "K243I", "N255T", "K312E", "Q315R", "-370S"], "gp41": ["Q108L"], "nef": ["A25P", "I168M"], "p17": ["F79Y"], "tat": ["I74L"], "vpr": ["T63I"]}, "labels": {"aa": "gp120: -124E, K201R, D202N, E204T, K243I, N255T, K312E, Q315R, -370S; gp41: Q108L; nef: A25P, I168M; p17: F79Y; tat: I74L; vpr: T63I"}}, "children": [{"name": "A1_NODE_0000047", "node_attrs": {"div": 0.12478999999999997, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A388G", "G518A", "A683G", "G1089A", "G1232A", "A1265C", "G1302A", "T1334C", "G1487A", "G1586A", "G1661A", "A1673G", "A1738G", "C1826G", "A2161G", "C2353T", "G2462A", "G2686A", "A2828G", "A2829T", "A2937G", "A2969G", "A3142G", "G3385A", "A3454G", "C3550T", "G3556A", "C4076A", "T4444C", "A4735G", "C4914T", "G4923A", "G5128A", "G5385A", "A5544C", "G5545A", "C5614T", "T5704A", "G5706A", "A5806C", "G5842-", "A6020G", "C6165G", "-6175T", "-6203G", "-6206G", "-6209A", "G6253A", "T6382C", "A6684C", "A6788G", "-6837A", "-6956T", "-6957T", "-6973C", "-6978A", "A7129G", "A7155G", "C7156T", "C7170T", "C7324T", "G7477A", "C7584A", "G7628A", "G7720A", "G7765A", "A7782G", "C7792A", "T7796A", "A7943G", "T8155C", "A8173G", "T8209C", "A8455C", "C8507T", "C8676T", "G8678A", "T8702C", "T8849C", "T8947A", "G8955A", "G8977A", "A8978C", "C8979A"], "INT": ["L101I"], "RT-p51": ["D123S", "M245V", "K281R", "I292V"], "RT-p66": ["D123S", "M245V", "K281R", "I292V"], "gp120": ["I56V", "M133I", "K277T", "T439I"], "gp41": ["T94N", "E109N", "N160S", "S165T", "R214G", "N302S", "V304L"], "nef": ["D38A", "E63D", "F202Y", "D205N"], "p17": ["K18R", "M61I"], "p24": ["H87Q", "V191I"], "p6": ["E20G"], "pro": ["L10V"], "rev": ["E10A", "K32R", "S103P", "I109V"], "vif": ["K50R", "H110Y", "D113N", "R181K"], "vpr": ["G94S"], "vpu": ["L33I", "D81-"]}, "labels": {"aa": "INT: L101I; RT-p51: D123S, M245V, K281R, I292V; RT-p66: D123S, M245V, K281R, I292V; gp120: I56V, M133I, K277T, T439I; gp41: T94N, E109N, N160S, S165T, R214G, N302S, V304L; nef: D38A, E63D, F202Y, D205N; p17: K18R, M61I; p24: H87Q, V191I; p6: E20G; pro: L10V; rev: E10A, K32R, S103P, I109V; vif: K50R, H110Y, D113N, R181K; vpr: G94S; vpu: L33I, D81-"}}, "children": [{"name": "FJ623483", "node_attrs": {"div": 0.17579999999999996, "accession": "FJ623483", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2006.0}, "Strain_name": {"value": "06KECst_016"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G386A", "T396C", "G452A", "A480G", "A509G", "C531T", "G562A", "A605G", "T614G", "A654C", "A656G", "A659G", "G671A", "G686A", "A697C", "C698T", "C707T", "A714C", "C719T", "C823G", "C851T", "A866G", "T992G", "G1019A", "T1052C", "G1078C", "G1090A", "C1137T", "C1211T", "A1242G", "C1243T", "T1262C", "A1274T", "G1278C", "G1279A", "T1280A", "G1339A", "G1388A", "G1404A", "T1444C", "A1475G", "G1499A", "C1692T", "T1720G", "T1724G", "G1726A", "G1731A", "G1737A", "T1741C", "G1757A", "G1766T", "A1770G", "A1771G", "G1773C", "C1775G", "A1776G", "G1777A", "G1778A", "G1779C", "C1782-", "A1783-", "G1784-", "C1792T", "T1828C", "G1839A", "A1841G", "C1903A", "G1912A", "C1957T", "A1962G", "A1968G", "A2020T", "G2074A", "T2080C", "T2104C", "G2113A", "T2116A", "A2126C", "C2149G", "G2173A", "A2185G", "C2263T", "A2290G", "A2371G", "A2473G", "C2521T", "A2563G", "A2590T", "C2613T", "A2614G", "A2615C", "A2626C", "A2630G", "A2674G", "A2746C", "G2794A", "A2815G", "A2839C", "A2844G", "G2909C", "G3004A", "C3031A", "A3043G", "T3049C", "A3124G", "A3136G", "A3192G", "A3199G", "G3220A", "G3221A", "T3222C", "T3303C", "G3304A", "T3310C", "G3316A", "T3319C", "T3399C", "C3449T", "G3490A", "C3541T", "C3542T", "A3622G", "G3630A", "G3631A", "T3638G", "A3651G", "G3664A", "G3675A", "A3676C", "C3682T", "A3715G", "A3739G", "A3768G", "A3802G", "T3904C", "A3961G", "G3989A", "C4079T", "A4093C", "C4123T", "G4176A", "C4180T", "G4195A", "A4222C", "T4232A", "G4267A", "G4276C", "A4294G", "T4412C", "A4427T", "C4501G", "A4546T", "A4561G", "A4564G", "G4607A", "A4608G", "G4623A", "A4658G", "T4691A", "T4701G", "G4708A", "G4727A", "T4769A", "A4773C", "G4774A", "G4786T", "G4856A", "A4860G", "A4863G", "A4878G", "G4892A", "T4917C", "C4925A", "A4951G", "G4968A", "G4982T", "A4995T", "C5006A", "A5021T", "A5048G", "A5059G", "A5065G", "T5072C", "T5091C", "T5167A", "T5179A", "T5182C", "C5194T", "T5197C", "G5226C", "T5239C", "A5240G", "A5246G", "G5265T", "G5276C", "A5345G", "T5382C", "C5412T", "C5454T", "T5491C", "C5496A", "A5525G", "C5530T", "A5556G", "G5561A", "A5564C", "G5565A", "A5586G", "A5594G", "T5613A", "T5628G", "G5629T", "A5640G", "G5650T", "T5659C", "G5668A", "A5699T", "G5700T", "A5702G", "C5707A", "T5708G", "A5712G", "G5718A", "G5729A", "A5754G", "C5787A", "A5788T", "C5789T", "G5805C", "-5812G", "-5842T", "A5866C", "C5884T", "G5956C", "C5958A", "A5963G", "A5964T", "C6023A", "G6029A", "A6030C", "G6044A", "A6131C", "T6151C", "A6168G", "-6174C", "T6178C", "G6179A", "-6180C", "C6183G", "C6190T", "A6191G", "C6192T", "T6193C", "G6194A", "G6195A", "-6201C", "C6202A", "-6204G", "-6205T", "-6207G", "-6208T", "-6210G", "-6211G", "-6212A", "-6213A", "-6215G", "-6216T", "-6220C", "A6221C", "C6256T", "G6283A", "A6326G", "A6327G", "G6391A", "C6427T", "G6457C", "G6461A", "G6466A", "A6475G", "A6490C", "C6499T", "C6545T", "G6572C", "A6604T", "C6636T", "C6637T", "G6646A", "A6649C", "A6654C", "A6659C", "C6660T", "A6682G", "G6716A", "A6723T", "G6729A", "C6733T", "A6754G", "C6758T", "A6764G", "A6765T", "T6766G", "T6776A", "G6779C", "T6793A", "C6797T", "A6799C", "C6800A", "G6802T", "G6806T", "A6810T", "A6811G", "A6823G", "-6836A", "-6838C", "T6849G", "A6858G", "G6871A", "A6880G", "G6905A", "G6935A", "C6937A", "-6958C", "-6959C", "A6960C", "C6961T", "-6971G", "-6972G", "-6974A", "-6975C", "-6976G", "-6977C", "-6979G", "A6996-", "G6997-", "A7002G", "C7008A", "C7018T", "A7027G", "T7059C", "C7084T", "C7088A", "G7094A", "A7096G", "A7101G", "T7107A", "G7152A", "A7158C", "T7159A", "A7162G", "A7163-", "C7164-", "T7165-", "A7186G", "T7222C", "G7225A", "G7256A", "G7269C", "T7400C", "T7403C", "C7411T", "T7462A", "A7470G", "G7517C", "G7533A", "A7572G", "C7585T", "C7597T", "T7609C", "A7620G", "A7626T", "G7627A", "A7629G", "C7642T", "G7657A", "C7658G", "A7668G", "C7702A", "C7703T", "A7714C", "G7717A", "A7750G", "T7751A", "G7754T", "A7772G", "G7790C", "T7801C", "A7818G", "A7826G", "G7873A", "T7879A", "A7929T", "A7931G", "A7971G", "G7998A", "A8011C", "A8032G", "T8047C", "G8050C", "C8065T", "C8095A", "G8102-", "C8103-", "A8104-", "G8105-", "C8106-", "G8107-", "A8108-", "G8109-", "G8110-", "A8111-", "C8112-", "T8113-", "A8118G", "T8121A", "T8122C", "C8123A", "T8124G", "G8125C", "G8126A", "A8128T", "A8130T", "A8143G", "T8164C", "T8182G", "C8183A", "T8251C", "G8255A", "G8268C", "G8274C", "C8294A", "T8348A", "G8354A", "T8366C", "T8371A", "G8373C", "T8374C", "G8375A", "G8388A", "A8435G", "A8458G", "T8471A", "G8479C", "C8531T", "G8537A", "C8595T", "G8597T", "G8653A", "A8656G", "A8666C", "C8687T", "A8701T", "A8739C", "A8762G", "C8771T", "G8804A", "A8806G", "G8807A", "C8809A", "T8810A", "G8816A", "T8864G", "T8870A", "A8892C", "C8915G", "A8917G", "C8927T", "G8929T", "A8950T", "C8960A", "G8991A", "A9026-", "G9027-", "T9028-", "T9029-", "G9030-", "G9031-", "G9032-", "G9033-"], "INT": ["V72I", "G134D", "S153T", "E167D", "T218S", "D278S", "G283D"], "RT-p51": ["K11Q", "S173L", "K174Q", "E177D", "I179V", "E248D", "E250G", "A272P", "D312E", "K366R", "V376T", "M403T", "V435A"], "RT-p66": ["K11Q", "S173L", "K174Q", "E177D", "I179V", "E248D", "E250G", "A272P", "D312E", "V376T", "M403T", "V435A", "R512K", "S515A", "N519S", "G527D", "K558R"], "gp120": ["E4D", "E34D", "T35K", "K37V", "H57N", "E59T", "D64N", "K93Q", "T104S", "N105S", "-107T", "-109T", "-110S", "-111N", "-113V", "-114N", "-115S", "-116T", "-117G", "-118G", "-119R", "-120K", "-121V", "-122D", "-123Q", "I126M", "E158G", "R201N", "E203K", "K212N", "G240Q", "K241E", "T265N", "N267T", "T269L", "A288T", "Y290F", "H302Y", "N304V", "S308T", "K309Q", "R315Y", "Q316N", "A318S", "E319V", "-328N", "I332R", "N335S", "G351R", "G361R", "-368F", "N378-", "-383S", "T385N", "V402A", "Q412K", "V414M", "V418E", "I425M", "N434S", "N435T", "T437-", "V468I", "R472T"], "gp41": ["H53Q", "K56R", "V72L", "R77K", "K90R", "K106R", "N109S", "Q119E", "K122R", "N133R", "E137D", "L150M", "A151S", "N157D", "D163Q", "K172R", "I175V", "H209L", "T210A", "E223G", "G232D", "A267V", "A268G", "R269H", "T270S", "V271S", "E272L", "L273R", "L274G", "G275L", "V318I", "G322A", "G324A", "H331N"], "nef": ["I10K", "V11P", "G29A", "K39R", "S46T", "L85F", "R104K", "K105R", "E108D", "Y120F", "T133P", "K155R", "A156E", "D174E", "K184Q", "K192R", "R196L", "M198L", "Y203F", "C206*"], "p1": ["K4R"], "p17": ["S49G", "P66S", "R76K", "D93E", "I107L", "D121A", "N124S", "K127Q"], "p2": ["V7A"], "p24": ["A31G", "M96I", "G116A", "G120N", "T171V", "G183Q", "R203K", "G225S"], "p6": ["I14S", "C15W", "G16E", "G18R", "G20R", "I21T", "-26Q", "K27G", "K31-", "D32-", "R33-", "E34-", "Q35-", "L50S"], "pro": ["I15V", "D35E", "K55R", "K57R"], "rev": ["R4G", "K14R", "V16I", "R17Q", "Q24R", "Y28C", "I55L", "T62A", "S67P", "A68P", "L73F", "L83I", "S86-", "E87-", "D88-", "C89-", "G90-", "T91-", "S92-", "V97L", "R99G", "S106P", "S112E"], "tat": ["N40K", "K50R", "R52W", "S62N", "K63T"], "vif": ["M8V", "V13I", "F39V", "R41K", "D61E", "R63Q", "R67I", "R92G", "R93G", "I98V", "Y111H", "N113K", "K122R", "V128I", "R132S", "T137S", "N140K", "K158R", "K160R"], "vpr": ["D21E", "D25E", "G41A", "I46V", "N48D", "W54L", "E58Q", "S93P"], "vpu": ["P3S", "L4S", "C7W", "A8S", "A15S", "V21I", "K31I", "K32R", "L34R", "R41K", "E66D", "M67L", "-79Y", "-80D", "-81L"]}, "labels": {"aa": "INT: V72I, G134D, S153T, E167D, T218S, D278S, G283D; RT-p51: K11Q, S173L, K174Q, E177D, I179V, E248D, E250G, A272P, D312E, K366R, V376T, M403T, V435A; RT-p66: K11Q, S173L, K174Q, E177D, I179V, E248D, E250G, A272P, D312E, V376T, M403T, V435A, R512K, S515A, N519S, G527D, K558R; gp120: E4D, E34D, T35K, K37V, H57N, E59T, D64N, K93Q, T104S, N105S, -107T, -109T, -110S, -111N, -113V, -114N, -115S, -116T, -117G, -118G, -119R, -120K, -121V, -122D, -123Q, I126M, E158G, R201N, E203K, K212N, G240Q, K241E, T265N, N267T, T269L, A288T, Y290F, H302Y, N304V, S308T, K309Q, R315Y, Q316N, A318S, E319V, -328N, I332R, N335S, G351R, G361R, -368F, N378-, -383S, T385N, V402A, Q412K, V414M, V418E, I425M, N434S, N435T, T437-, V468I, R472T; gp41: H53Q, K56R, V72L, R77K, K90R, K106R, N109S, Q119E, K122R, N133R, E137D, L150M, A151S, N157D, D163Q, K172R, I175V, H209L, T210A, E223G, G232D, A267V, A268G, R269H, T270S, V271S, E272L, L273R, L274G, G275L, V318I, G322A, G324A, H331N; nef: I10K, V11P, G29A, K39R, S46T, L85F, R104K, K105R, E108D, Y120F, T133P, K155R, A156E, D174E, K184Q, K192R, R196L, M198L, Y203F, C206*; p1: K4R; p17: S49G, P66S, R76K, D93E, I107L, D121A, N124S, K127Q; p2: V7A; p24: A31G, M96I, G116A, G120N, T171V, G183Q, R203K, G225S; p6: I14S, C15W, G16E, G18R, G20R, I21T, -26Q, K27G, K31-, D32-, R33-, E34-, Q35-, L50S; pro: I15V, D35E, K55R, K57R; rev: R4G, K14R, V16I, R17Q, Q24R, Y28C, I55L, T62A, S67P, A68P, L73F, L83I, S86-, E87-, D88-, C89-, G90-, T91-, S92-, V97L, R99G, S106P, S112E; tat: N40K, K50R, R52W, S62N, K63T; vif: M8V, V13I, F39V, R41K, D61E, R63Q, R67I, R92G, R93G, I98V, Y111H, N113K, K122R, V128I, R132S, T137S, N140K, K158R, K160R; vpr: D21E, D25E, G41A, I46V, N48D, W54L, E58Q, S93P; vpu: P3S, L4S, C7W, A8S, A15S, V21I, K31I, K32R, L34R, R41K, E66D, M67L, -79Y, -80D, -81L"}}}, {"name": "KF716475", "node_attrs": {"div": 0.16785999999999995, "accession": "KF716475", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2011.0}, "Strain_name": {"value": "DEMA11KE001"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["A263G", "G317A", "G413A", "A416G", "A417G", "A418C", "T435C", "A461G", "T467C", "G542C", "T560C", "A563G", "C606A", "A653G", "C672A", "G687A", "G706A", "A708C", "G716T", "C767T", "T771A", "C772A", "G837A", "A866T", "C879T", "A881T", "C902T", "C917T", "A959G", "G977A", "T992A", "C1094T", "C1136T", "A1205G", "T1220C", "G1256A", "A1343C", "T1344C", "G1418A", "T1481C", "G1486A", "G1493A", "G1508A", "T1511C", "C1514T", "C1541T", "T1559G", "A1588G", "G1642A", "T1646C", "T1682A", "A1736C", "C1750T", "G1760A", "A1772G", "-1785G", "-1786G", "-1787T", "T1790A", "C1825A", "T1909G", "A1932G", "A1951G", "T1954C", "G1963A", "G1972A", "T1978G", "C1985G", "T2035C", "T2087C", "A2212T", "T2338C", "G2380A", "G2389A", "C2392T", "C2393T", "C2434T", "C2456G", "A2508C", "A2557G", "T2632C", "G2710A", "G2727A", "A2752G", "C2797T", "A2842G", "A2845C", "A2962G", "T2968G", "G3016A", "G3044A", "T3045C", "C3067A", "A3116G", "A3151G", "G3168A", "G3200A", "C3252T", "A3292T", "C3307T", "G3370A", "C3376T", "T3399A", "A3442G", "G3448A", "C3469A", "A3543T", "T3544C", "G3617T", "A3637G", "G3643A", "A3703G", "A3736G", "C3751T", "T3755A", "T3778C", "C3808A", "A3817G", "A3866G", "G3877A", "G3997A", "G4228A", "T4234C", "G4243A", "A4264C", "G4276A", "C4579T", "G4581A", "C4652T", "C4665T", "T4702G", "A4722T", "C4728A", "T4738C", "C4820A", "G4855A", "C4937A", "G4949A", "C4976T", "A4994T", "T5028C", "A5048T", "A5054T", "C5062T", "G5066A", "T5073C", "G5094A", "A5122G", "C5149T", "G5185A", "C5186A", "T5209A", "C5213A", "C5214T", "A5215G", "A5233G", "C5248T", "A5285G", "A5287C", "C5294T", "A5302G", "C5306T", "T5327C", "G5444A", "C5445T", "A5462G", "G5463A", "A5480C", "T5483C", "G5493A", "A5556C", "A5585C", "T5611A", "T5612A", "C5620A", "A5621C", "A5655G", "G5687C", "A5699G", "C5707T", "G5747A", "C5756A", "A5790T", "T5791G", "C5792A", "A5793T", "A5794G", "C5795A", "C5797T", "T5799G", "A5800G", "T5801C", "T5802G", "A5804C", "G5808T", "G5809T", "G5811T", "-5815G", "-5816A", "-5817G", "-5818A", "-5819T", "-5820G", "-5821G", "-5822G", "-5823G", "-5824A", "C5826T", "A5831G", "A5843-", "T5844-", "G5864C", "T5885C", "G5917C", "C5922T", "G5956A", "T5992C", "A6015G", "A6016T", "C6023T", "C6052T", "A6066G", "T6142A", "T6171C", "-6174A", "A6177G", "-6180T", "A6188G", "C6189T", "G6195T", "T6196C", "G6198A", "C6199T", "-6201A", "-6204A", "-6205G", "-6207T", "-6208C", "-6210A", "-6211C", "-6212T", "-6213T", "-6215C", "-6216G", "-6220G", "A6221G", "G6223A", "A6225G", "C6241T", "G6262A", "C6278A", "C6305T", "T6306C", "A6311G", "C6317T", "T6322G", "A6328T", "T6331G", "A6333G", "A6338G", "G6339A", "T6340G", "A6349G", "G6368A", "G6379A", "G6401C", "G6442A", "A6456G", "T6460C", "A6470G", "G6481A", "C6482T", "G6575C", "A6605G", "C6618T", "A6639G", "G6640T", "T6643C", "A6647C", "A6664G", "A6682C", "A6686-", "G6687-", "T6688-", "G6689-", "T6690-", "A6691-", "C6692G", "-6697A", "-6698C", "-6699A", "-6700T", "-6701A", "-6702T", "A6706G", "A6725G", "T6730A", "A6732C", "C6752A", "A6771G", "T6772C", "G6774A", "G6779A", "A6790C", "A6798G", "-6830A", "-6831A", "-6832A", "C6835T", "-6836G", "-6838T", "A6840C", "A6848G", "A6850G", "T6856G", "A6910G", "T6922C", "-6958T", "-6959A", "-6965A", "-6966C", "-6967T", "-6968T", "-6969G", "-6970G", "-6971T", "-6972C", "-6974C", "-6975T", "-6976T", "-6977A", "-6979C", "G6980A", "A6981G", "A6989G", "G6990A", "-6994A", "-6995G", "A6996G", "-6998A", "-6999T", "C7006T", "T7009C", "A7100C", "A7127C", "T7144G", "A7161G", "A7162C", "C7164A", "G7275A", "G7307A", "A7312T", "A7313C", "G7343A", "C7344T", "A7345G", "A7375G", "C7397A", "A7399C", "T7516C", "G7517A", "A7573G", "C7574G", "C7625T", "G7627C", "A7643G", "C7645A", "T7656A", "T7666G", "G7701A", "A7706C", "C7747T", "G7759C", "G7777A", "G7790A", "T7876C", "A7880G", "G7890A", "T7912C", "G7918A", "T7930C", "A7931C", "C7932T", "T7948A", "G8050A", "T8094C", "T8171C", "T8205C", "C8221T", "A8222G", "G8267A", "G8273A", "T8290C", "G8323T", "T8348C", "T8414C", "C8415T", "A8469G", "T8483C", "G8484A", "C8498T", "T8509C", "G8522A", "T8567C", "A8570C", "T8582A", "G8590C", "C8595A", "G8597A", "A8667C", "G8717T", "T8720C", "A8739G", "C8740T", "T8746A", "A8753G", "A8754T", "C8755G", "A8756C", "T8789C", "T8795A", "C8812A", "G8843T", "A8852G", "G8880A", "T8881C", "A8886G", "A8887T", "A8893G", "G8894A", "C8913T", "G8923C", "A8924G", "C8934A", "A8952G", "A8954G", "-9109T"], "INT": ["D11E", "I31V", "R269K"], "RT-p51": ["H121D", "E138A", "S211N", "E250D", "D291E", "V317T", "D324E", "I341V", "R358K", "A369T", "T386I", "E399D", "V435E"], "RT-p66": ["H121D", "E138A", "S211N", "E250D", "D291E", "V317T", "D324E", "I341V", "R358K", "R366K", "A369T", "T386I", "E399D", "V435E", "Y483L", "A508S", "S554T"], "gp120": ["E4Q", "Y11H", "E21D", "T23I", "Q54R", "H57Y", "N71S", "T104-", "N105-", "V106-", "N108-", "T112-", "-122E", "-123G", "E124G", "Q142K", "L151S", "I153V", "P155S", "I156M", "E158S", "D159N", "N160E", "A172T", "E183Q", "N206D", "P210S", "V242Q", "I243V", "N251D", "T255I", "V261A", "K262S", "T265Q", "R276S", "S278G", "V279I", "R280H", "T291A", "N292R", "D293N", "I294A", "Q300K", "N306S", "R307K", "E312D", "-326K", "-328D", "K329T", "I332V", "N334K", "-368S", "-372Q", "-373S", "-379D", "-380T", "-381G", "-382I", "-383N", "R416Q", "I425L", "N433V", "E436G", "T437N", "R474K"], "gp41": ["V2I", "I4G", "A14M", "I24M", "Q32N", "V72M", "L91V", "L108Y", "N114E", "L118Q", "D121E", "I135L", "L152F", "D163K", "I193V", "R196K", "T210L", "I264T", "I301T", "I307V", "G322R", "G324R", "L340F"], "nef": ["I16V", "P25S", "I43V", "V48I", "V56A", "G83A", "L85I", "I109L", "Q125H", "T133V", "F135Y", "T138C", "D151E", "T157N", "E176D", "V180T", "K182V", "K184R", "L191F", "R194T", "K204E"], "p17": ["K28A", "K69N", "Q113K", "A118T", "S125R", "K127N"], "p24": ["S14N", "V36I", "E45D", "Q50Y", "G120S"], "p6": ["E19D", "S23F", "-36G", "L38P", "I39S", "P49Q"], "p7": ["R7K", "K41R"], "pro": ["K14R", "D37E", "K45R", "D60E", "L63V"], "rev": ["K14T", "Y28P", "S34T", "A68T", "V108A"], "tat": ["S23N", "K29R", "Q35P", "V36A", "Q60H", "Q70P", "L74T", "P75S", "V80D"], "vif": ["H27Y", "F39C", "S46C", "H48N", "V51A", "D78E", "R90K", "D117E", "Q136H", "T159I", "A170T", "K179R", "T188I"], "vpr": ["H28N", "P37M", "I61V"], "vpu": ["L2N", "L4W", "L5N", "G27A", "K31R", "R47K", "A50E", "S62A", "T63A", "I65C", "-69N", "-70Y", "-71G", "-72L", "-73G", "-74D", "-75N", "-76N", "D78-"]}, "labels": {"aa": "INT: D11E, I31V, R269K; RT-p51: H121D, E138A, S211N, E250D, D291E, V317T, D324E, I341V, R358K, A369T, T386I, E399D, V435E; RT-p66: H121D, E138A, S211N, E250D, D291E, V317T, D324E, I341V, R358K, R366K, A369T, T386I, E399D, V435E, Y483L, A508S, S554T; gp120: E4Q, Y11H, E21D, T23I, Q54R, H57Y, N71S, T104-, N105-, V106-, N108-, T112-, -122E, -123G, E124G, Q142K, L151S, I153V, P155S, I156M, E158S, D159N, N160E, A172T, E183Q, N206D, P210S, V242Q, I243V, N251D, T255I, V261A, K262S, T265Q, R276S, S278G, V279I, R280H, T291A, N292R, D293N, I294A, Q300K, N306S, R307K, E312D, -326K, -328D, K329T, I332V, N334K, -368S, -372Q, -373S, -379D, -380T, -381G, -382I, -383N, R416Q, I425L, N433V, E436G, T437N, R474K; gp41: V2I, I4G, A14M, I24M, Q32N, V72M, L91V, L108Y, N114E, L118Q, D121E, I135L, L152F, D163K, I193V, R196K, T210L, I264T, I301T, I307V, G322R, G324R, L340F; nef: I16V, P25S, I43V, V48I, V56A, G83A, L85I, I109L, Q125H, T133V, F135Y, T138C, D151E, T157N, E176D, V180T, K182V, K184R, L191F, R194T, K204E; p17: K28A, K69N, Q113K, A118T, S125R, K127N; p24: S14N, V36I, E45D, Q50Y, G120S; p6: E19D, S23F, -36G, L38P, I39S, P49Q; p7: R7K, K41R; pro: K14R, D37E, K45R, D60E, L63V; rev: K14T, Y28P, S34T, A68T, V108A; tat: S23N, K29R, Q35P, V36A, Q60H, Q70P, L74T, P75S, V80D; vif: H27Y, F39C, S46C, H48N, V51A, D78E, R90K, D117E, Q136H, T159I, A170T, K179R, T188I; vpr: H28N, P37M, I61V; vpu: L2N, L4W, L5N, G27A, K31R, R47K, A50E, S62A, T63A, I65C, -69N, -70Y, -71G, -72L, -73G, -74D, -75N, -76N, D78-"}}}]}, {"name": "A1_NODE_0000048", "node_attrs": {"div": 0.13033999999999998, "clade_membership": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["C362T", "C606A", "A608G", "C679-", "A1350G", "G1404A", "G1419A", "G1442A", "T1481C", "C1491G", "A1492G", "G1493C", "A1494C", "A1496G", "G1498A", "G1499A", "T1501G", "T1502G", "-1503A", "-1504T", "-1505T", "C1598T", "G1642A", "A1719C", "G1723T", "G1777A", "-1785G", "T1796C", "A1857G", "G1963A", "G2215T", "A2241G", "G2389A", "G2463A", "A2473G", "G2707A", "A2896C", "G3004A", "C3031A", "A3192G", "G3508A", "C3542T", "G3630A", "T3757A", "A3766G", "A3890T", "G3925A", "C4146G", "A4423C", "C4650A", "T4670C", "T4702G", "G4727A", "A4806C", "A4995G", "T5167G", "C5194A", "A5480C", "T5611C", "G5652A", "G5700A", "A6024C", "C6067T", "C6109T", "C6115T", "C6166A", "-6174G", "-6175A", "-6215A", "G6223A", "A6230C", "G6262A", "G6283A", "C6318A", "T6322A", "A6323G", "A6328G", "T6395A", "C6396A", "C6427T", "A6456G", "G6461A", "G6466A", "A6490T", "A6505C", "G6640A", "A6648C", "G6729A", "C6758T", "A6773G", "A6821G", "T6943C", "A6950T", "-6969G", "-6994A", "A7005G", "C7266A", "G7269C", "A7626T", "T7630G", "G7633C", "C7775T", "G7918A", "A7929T", "G7992A", "T8047C", "C8065T", "T8094C", "T8164C", "T8171G", "G8184A", "A8288T", "C8294A", "A8329G", "G8388A", "C8424A"], "INT": ["S39C", "M50I", "A124G", "Q216H"], "RT-p51": ["E40D", "K49R", "D312E", "K366R"], "RT-p66": ["E40D", "K49R", "D312E", "R512K"], "gp120": ["H57P", "-110T", "I126L", "P155Q", "N157D", "E158K", "K212N", "H302Y", "T366S", "-373S", "N378-", "D384-", "T471N", "R472T"], "gp41": ["E110D", "H209L", "G230D", "I264T", "L290V", "R294Q", "I298T", "I329F", "H331N"], "p17": ["N124S"], "p24": ["T207A", "G225S", "V230I"], "p6": ["I14L", "C15F"], "p7": ["Q9G", "K10Q", "R11K", "I12R", "-13I"], "pro": ["K14R", "K20R"], "rev": ["S67P", "L73F", "S106P", "V108G"], "tat": ["R57G"], "vif": ["H22N", "T74P", "T137A"], "vpr": ["D21E"]}, "labels": {"aa": "INT: S39C, M50I, A124G, Q216H; RT-p51: E40D, K49R, D312E, K366R; RT-p66: E40D, K49R, D312E, R512K; gp120: H57P, -110T, I126L, P155Q, N157D, E158K, K212N, H302Y, T366S, -373S, N378-, D384-, T471N, R472T; gp41: E110D, H209L, G230D, I264T, L290V, R294Q, I298T, I329F, H331N; p17: N124S; p24: T207A, G225S, V230I; p6: I14L, C15F; p7: Q9G, K10Q, R11K, I12R, -13I; pro: K14R, K20R; rev: S67P, L73F, S106P, V108G; tat: R57G; vif: H22N, T74P, T137A; vpr: D21E"}}, "children": [{"name": "JF683767", "node_attrs": {"div": 0.16699999999999998, "accession": "JF683767", "clade_membership": {"value": "A1"}, "country": {"value": "CY"}, "date": {"value": 2008.0}, "Strain_name": {"value": "CY218"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["T396C", "A426C", "G428A", "T434C", "A461C", "A480G", "C507A", "A516T", "A520C", "A540C", "C558A", "G562A", "T641C", "A656G", "T662G", "G671-", "C672-", "A673-", "A674-", "A675-", "A676-", "G677-", "A678-", "A683G", "G696A", "A704G", "A714G", "A715C", "C731T", "A762G", "T771C", "T774A", "T824C", "A932G", "C950A", "A968T", "C1005G", "G1078C", "G1199A", "A1208G", "G1271A", "C1299T", "G1302A", "T1334C", "T1358C", "G1418A", "C1535T", "G1586A", "A1601G", "C1610A", "T1682C", "G1731A", "-1746T", "-1747C", "-1748T", "T1749-", "C1750-", "C1751-", "C1756T", "-1786A", "-1787A", "T1790C", "C1825T", "T1978G", "C1979G", "G1981A", "A1982G", "A2002C", "C2062T", "T2087C", "A2098C", "G2113A", "G2224A", "G2311A", "T2383C", "C2393T", "A2404G", "G2428A", "C2456G", "A2470G", "A2482G", "C2499T", "C2521A", "C2575T", "C2584T", "C2605A", "A2677G", "G2710A", "T2719C", "G2727A", "C2728A", "T2737C", "A2828C", "G2830T", "A2842G", 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"A7148G", "A7149G", "G7152A", "C7156T", "C7170T", "C7171T", "A7200G", "A7246C", "T7251C", "G7270A", "T7308C", "A7373G", "A7375G", "C7411T", "T7462C", "G7533A", "A7573G", "A7583C", "C7597T", "C7625A", "C7645T", "T7666G", "T7681C", "G7701A", "G7717A", "C7792A", "T7801A", "T7870A", "G7947A", "T7948A", "C7959T", "C7999T", "A8119G", "C8120A", "T8155C", "C8156T", "A8173G", "T8182C", "T8196C", "T8205C", "G8208A", "C8213T", "G8234A", "G8254A", "G8255A", "A8269G", "G8273A", "G8280T", "T8302C", "G8323T", "G8335A", "C8336T", "T8348G", "G8365A", "G8373C", "T8374C", "G8375A", "A8424G"], "RT-p51": ["H121D", "T135I", "S211K", "M245H", "A286T", "A369T", "E399D", "V435A"], "RT-p66": ["H121D", "T135I", "S211K", "M245H", "A286T", "A369T", "E399D", "V435A", "K454R"], "gp120": ["E4Q", "D64N", "K89Q", "-107R", "-109V", "-111G", "E136V", "S161N", "E203N", "T204S", "N206D", "V217D", "G240E", "V242I", "I243M", "S278I", "-282G", "-283P", "Q300R", "N304T", "R307A", "K309E", "R315E", "A318V", "K323V", "Y324H", "-326G", "I332N", "N334T", "N335K", "S336P", "-368N", "-372R", "-374N", "-375G", "-376N", "T385-", "V402T", "I425L", "N432G", "T439I", "D449G", "E464D", "L466P"], "gp41": ["V2A", "I24V", "R77K", "T94P", "L108M", "D121E", "D163E", "N166K", "G215E", "P219L", "L273I", "I301T", "V304F", "V311I", "V318I", "G324R", "G326V", "L340F"], "nef": ["S8N", "V11P", "P28R", "G29R"], "p17": ["M31L", "E42D", "S49G", "Q58K", "M61L", "E62A", "K69Q", "L75I", "R76K", "I107M", "N109K", "Q113-", "K114-", "T115-", "D121N", "K127A"], "p24": ["I11V", "S14P", "L15M", "E79D", "P92A", "G116A", "V191I"], "p6": ["G18R", "P25L", "R33K", "-36V", "L38S", "P49L"], "p7": ["D48E"], "pro": ["D60E", "Q61E", "I62V"], "rev": ["S8G", "V16I", "S34T", "Q51*", "T91D", "S103L", "I109V", "S112P"], "tat": ["S23N", "K24R", "Y26F", "C31S", "Q35I", "V36A", "Q54R", "S62N", "P68L", "V69I", "Q70P", "V80N", "P84S"], "vif": ["F39W", "H73Q", "R93K", "Q102L", "D113N", "S118T", "V128I", "R132I", "N140T", "T155A", "T157R", "K160R", "I168R", "G182D", "P183H", "S186N"], "vpu": ["L4P", "C7W", "I13V", "L16F", "I28L", "D58E", "T63A", "I65V", "E66D", "-69N", "D78-"]}, "labels": {"aa": "RT-p51: H121D, T135I, S211K, M245H, A286T, A369T, E399D, V435A; RT-p66: H121D, T135I, S211K, M245H, A286T, A369T, E399D, V435A, K454R; gp120: E4Q, D64N, K89Q, -107R, -109V, -111G, E136V, S161N, E203N, T204S, N206D, V217D, G240E, V242I, I243M, S278I, -282G, -283P, Q300R, N304T, R307A, K309E, R315E, A318V, K323V, Y324H, -326G, I332N, N334T, N335K, S336P, -368N, -372R, -374N, -375G, -376N, T385-, V402T, I425L, N432G, T439I, D449G, E464D, L466P; gp41: V2A, I24V, R77K, T94P, L108M, D121E, D163E, N166K, G215E, P219L, L273I, I301T, V304F, V311I, V318I, G324R, G326V, L340F; nef: S8N, V11P, P28R, G29R; p17: M31L, E42D, S49G, Q58K, M61L, E62A, K69Q, L75I, R76K, I107M, N109K, Q113-, K114-, T115-, D121N, K127A; p24: I11V, S14P, L15M, E79D, P92A, G116A, V191I; p6: G18R, P25L, R33K, -36V, L38S, P49L; p7: D48E; pro: D60E, Q61E, I62V; rev: S8G, V16I, S34T, Q51*, T91D, S103L, I109V, S112P; tat: S23N, K24R, Y26F, C31S, Q35I, V36A, Q54R, S62N, P68L, V69I, Q70P, V80N, P84S; vif: F39W, H73Q, R93K, Q102L, D113N, S118T, V128I, R132I, N140T, T155A, T157R, K160R, I168R, G182D, P183H, S186N; vpu: L4P, C7W, I13V, L16F, I28L, D58E, T63A, I65V, E66D, -69N, D78-"}}}, {"name": "KT022374", "node_attrs": {"div": 0.17043999999999998, "accession": "KT022374", "clade_membership": {"value": "A1"}, "country": {"value": "KE"}, "date": {"value": 2005.0}, "Strain_name": {"value": "05KE607907V4"}, "LANL_subtype": {"value": "A1"}}, "branch_attrs": {"mutations": {"nuc": ["G378C", "C379G", "A387G", "A388T", "T435C", "A585G", "C586T", "T614A", "G677A", "-679G", "G687A", "G716T", "T718C", "A735G", "A873G", "A878G", "C897T", "A903G", "G908A", "C950T", "C1062A", "C1063T", "C1115A", "A1123G", "T1187C", "C1214T", "C1247T", "G1268A", "A1274G", "G1301A", "G1388A", "A1400T", "A1448G", "T1451G", "G1486A", "G1501A", "C1514T", "A1529G", "T1547C", "A1567G", "A1619G", "G1657A", 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"T8509C", "A8518C", "G8528A", "C8531G", "A8549G", "C8585T", "T8644C", "G8654A", "A8666T", "C8741T", "T8779A", "A8794C", "C8812A", "A8882C", "A8887G", "G8888A", "C8900T", "C8913T", "A8917G", "C8928A", "G8933A", "C8934G", "T8935A", "C8948T"], "INT": ["S17T", "L101I", "V113I"], "RT-p51": ["K64R", "P243S", "M245K", "E248D", "Q334H", "M377L", "S379A", "K388R"], "RT-p66": ["K64R", "P243S", "M245K", "E248D", "Q334H", "M377L", "S379A", "K388R", "I517L", "N519S", "Q520L", "S554A", "K558R"], "gp120": ["A3G", "E4G", "N5S", "K18R", "E34D", "V40I", "N52D", "E59K", "K93Q", "V106A", "-107G", "-109D", "-111N", "-113N", "-114T", "-115T", "-116I", "E124G", "M133V", "L137I", "Y145H", "S146A", "R150K", "I153V", "D159A", "A172V", "V180I", "S181K", "E203T", "S228T", "K241E", "T250S", "V261A", "K262E", "P263S", "N272G", "R276K", "K277R", "R280H", "F289L", "D293N", "D297N", "Q300E", "N304K", "R307G", "K309Q", "E312N", "E319D", "Q320K", "K323E", "-328D", "N334K", "N335H", "N349T", "S360T", "G361K", "-368S", "-372D", "-374T", "-375D", "-376G", "R391K", "Q404R", "P409N", "V414K", "R416E", "V418A", "N433V", "N434S", "N435R", "T437N", "N471H"], "gp41": ["I4M", "I24L", "V69I", "E109Q", "L118Q", "D129E", "N133R", "N157S", "S165T", "A189T", "R196K", "N212S", "S251N", "T264A", "A267V", "G293S", "T298N", "N302S", "V304I", "A310V", "I321V", "I325L", "I336V"], "nef": ["P28T", "V48T", "N49-", "H50-", "P51-", "S52-", "C55-", "V56-", "E59A", "I101T", "E108D", "V146E", "D151A", "T157N", "E176D", "K182R", "L191F", "K192R", "M198E"], "p1": ["S9N"], "p17": ["A15R", "K18V", "T84V", "D93E", "T115R", "A118T", "K127N", "V128A"], "p24": ["I2V", "T48A", "I58V", "P111I", "D128E", "K131R"], "p6": ["R4G", "E19G", "R33Q", "-36A", "L38P", "I39S", "K42R"], "p7": ["R7K", "R12K", "K34R"], "pro": ["V13I", "D37E", "K57R", "K70R", "M89L"], "rev": ["E11D", "Q24K", "S54T", "I55L", "E57K", "T62A", "P72S", "L78I", "H82R", "V102I", "G111E", "K115E", "N116K"], "tat": ["Q35P", "T58P", "T77A"], "vif": ["V7A", "V31I", "N37G", "F39Y", "E45Q", "R92K", "I98V", "Q102S", "E134D", "R167K", "Q178R"], "vpr": ["R85Q", "S93P"], "vpu": ["L5D", "L16A", "L18I", "V21I", "K31T", "K32R", "K38R", "L42I", "E48Q", "M67L", "-69D", "-70Y", "-71D", "-72L", "-73G", "-79V", "-80N", "D81N"]}, "labels": {"aa": "INT: S17T, L101I, V113I; RT-p51: K64R, P243S, M245K, E248D, Q334H, M377L, S379A, K388R; RT-p66: K64R, P243S, M245K, E248D, Q334H, M377L, S379A, K388R, I517L, N519S, Q520L, S554A, K558R; gp120: A3G, E4G, N5S, K18R, E34D, V40I, N52D, E59K, K93Q, V106A, -107G, -109D, -111N, -113N, -114T, -115T, -116I, E124G, M133V, L137I, Y145H, S146A, R150K, I153V, D159A, A172V, V180I, S181K, E203T, S228T, K241E, T250S, V261A, K262E, P263S, N272G, R276K, K277R, R280H, F289L, D293N, D297N, Q300E, N304K, R307G, K309Q, E312N, E319D, Q320K, K323E, -328D, N334K, N335H, N349T, S360T, G361K, -368S, -372D, -374T, -375D, -376G, R391K, Q404R, P409N, V414K, R416E, V418A, N433V, N434S, N435R, T437N, N471H; gp41: I4M, I24L, V69I, E109Q, L118Q, D129E, N133R, N157S, S165T, A189T, R196K, N212S, S251N, T264A, A267V, G293S, T298N, N302S, V304I, A310V, I321V, I325L, I336V; nef: P28T, V48T, N49-, H50-, P51-, S52-, C55-, V56-, E59A, I101T, E108D, V146E, D151A, T157N, E176D, K182R, L191F, K192R, M198E; p1: S9N; p17: A15R, K18V, T84V, D93E, T115R, A118T, K127N, V128A; p24: I2V, T48A, I58V, P111I, D128E, K131R; p6: R4G, E19G, R33Q, -36A, L38P, I39S, K42R; p7: R7K, R12K, K34R; pro: V13I, D37E, K57R, K70R, M89L; rev: E11D, Q24K, S54T, I55L, E57K, T62A, P72S, L78I, H82R, V102I, G111E, K115E, N116K; tat: Q35P, T58P, T77A; vif: V7A, V31I, N37G, F39Y, E45Q, R92K, I98V, Q102S, E134D, R167K, Q178R; vpr: R85Q, S93P; vpu: L5D, L16A, L18I, V21I, K31T, K32R, K38R, L42I, E48Q, M67L, -69D, -70Y, -71D, -72L, -73G, -79V, -80N, D81N"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}, "root_sequence": {"INT": "FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED", "RT-p51": "PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETF", "RT-p66": "PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL", "gp120": "SATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKR", "gp41": "AVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERILL", "nef": "MGGKWSKSSVIGWPTVRERMRRAEPAADRVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPD*QNYTPGPGVRYPLTFGWCYKLVPVEPDKIEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*", "nuc": "GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCACCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCAGCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGAAGAATGATACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTATAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAACACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCCTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTC", "p1": "FLGKIWPSYKGRPGNF", "p17": "MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAADTGHSNQVSQNY", "p2": "AEAMSQVTNSATIM", "p24": "PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVL", "p6": "LQSRPEPTAPPEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ", "p7": "MQRGNFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQAN", "pro": "PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF", "rev": "MAGRSGDSDEELIRTVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILGTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE*", "tat": "MEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPTSQPRGDPTGPKE*", "vif": "MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*", "vpr": "MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTRQRRARNGASRS*", "vpu": "MQPIPIVAIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL*"}} \ No newline at end of file From 95b1be245b64c41f959e6f328a78b22bae1443aa Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Wed, 13 Mar 2024 15:40:56 +0000 Subject: [PATCH 2/2] chore: rebuild [skip ci] --- data/community/collection.json | 3 +- .../neherlab/hiv-1/unreleased/CHANGELOG.md | 3 + .../neherlab/hiv-1/unreleased/README.md | 35 + .../neherlab/hiv-1/unreleased/dataset.zip | Bin 0 -> 8263722 bytes .../hiv-1/unreleased/genome_annotation.gff3 | 27 + .../neherlab/hiv-1/unreleased/pathogen.json | 95 + .../neherlab/hiv-1/unreleased/reference.fasta | 155 + .../neherlab/hiv-1/unreleased/sequences.fasta | 4803 ++ .../neherlab/hiv-1/unreleased/tree.json | 1 + data_output/index.json | 38 + data_output/minimizer_index.json | 65510 ++++++++-------- 11 files changed, 38713 insertions(+), 31957 deletions(-) create mode 100644 data_output/community/neherlab/hiv-1/unreleased/CHANGELOG.md create mode 100644 data_output/community/neherlab/hiv-1/unreleased/README.md create mode 100644 data_output/community/neherlab/hiv-1/unreleased/dataset.zip create mode 100644 data_output/community/neherlab/hiv-1/unreleased/genome_annotation.gff3 create mode 100644 data_output/community/neherlab/hiv-1/unreleased/pathogen.json create mode 100644 data_output/community/neherlab/hiv-1/unreleased/reference.fasta create mode 100644 data_output/community/neherlab/hiv-1/unreleased/sequences.fasta create mode 100644 data_output/community/neherlab/hiv-1/unreleased/tree.json diff --git a/data/community/collection.json b/data/community/collection.json index ba6e5e6e..696958a3 100644 --- a/data/community/collection.json +++ b/data/community/collection.json @@ -15,6 +15,7 @@ ] }, "dataset_order": [ - "community/isuvdl/mazeller/prrsv2/orf5/yimim2023" + "community/isuvdl/mazeller/prrsv2/orf5/yimim2023", + "community/neherlab/hiv-1" ] } diff --git a/data_output/community/neherlab/hiv-1/unreleased/CHANGELOG.md b/data_output/community/neherlab/hiv-1/unreleased/CHANGELOG.md new file mode 100644 index 00000000..1f43c256 --- /dev/null +++ b/data_output/community/neherlab/hiv-1/unreleased/CHANGELOG.md @@ -0,0 +1,3 @@ +## Unreleased + +Initial release of an HIV-1 dataset for subtype classification. diff --git a/data_output/community/neherlab/hiv-1/unreleased/README.md b/data_output/community/neherlab/hiv-1/unreleased/README.md new file mode 100644 index 00000000..8d86ad0e --- /dev/null +++ b/data_output/community/neherlab/hiv-1/unreleased/README.md @@ -0,0 +1,35 @@ +# EXPERIMENTAL: HIV-1 group M subtype and CRF classification + +| Key | Value | +| ---------------------- | --------------------------------------------------------------------------------------------------------------------| +| authors | [Richard Neher (U Basel)](https://neherlab.org), [Thomas Leitner (LANL)](https://public.lanl.gov/tkl/) | +| data source | LANL database and Genbank | +| workflow | [github.com/neherlab/HIV-nextclade](https://github.com/neherlab/HIV-nextclade) | +| nextclade dataset path | neherlab/HIV-1 | +| reference | [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) | + +This Nextclade data set aligns sequences to the HXB2 reference and finds the closest match in a reference tree build from the [2021 Super filtered Alignment](https://www.hiv.lanl.gov/content/sequence/NEWALIGN/help.html#filter) provided by LANL. +Due to extensive recombination in HIV-1 group M, the tree is not a proper phylogenetic tree, but a collection of trees inferred for each subtype or recombinant form. These individuals trees are then grafted together. Rare CRFs, URFs, or subtypes represented less then 3 times in the reference alignment are labeled as subtype `other`. + +Note that the classification is **EXPERIMENTAL** and might be unreliable for sequences that lack a close representative in the tree. +The closeness to sequences in the reference set is quantified by the `private mutations` +As a general guide, the more private mutations a sequence has, the less reliable the subtype assignment will be. + +Note that alignments of sequences that are far from the subtype B HXB2 reference will have + +## Reference sequence HXB2 (NC_001802) + +This data set uses the NCBI reference sequence [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) based on the HXB2 genome [K03455](https://www.ncbi.nlm.nih.gov/nuccore/K03455.1). The primary reason for choosing it is to ensure amino acid substitutions in conserved proteins such as `Pol` are numbered consistently. +Note that this sequence as a few problems, including a premature stop-codon in `nef`. + +## Treatment of indel-rich regions + +There are multiple regions in the HIV-1 genome where deletions and insertions are common. Such regions are often not consistently aligned when aligning sequences individually to a reference. For the purposes of finding closely matching sequences in the reference tree, these regions are ignored. Specifically, tree placement ignores + + - The LTR before the beginning of `gag` (until position 336 in `NC_001802`) + - Positions 5780 until 5870 at the end of `vpu` and the beginning of `gp120` + - Positions 6160 until 6240 in `gp120`. + - Position 6940 unitl 7020 in `gp120`. + - The 5' LTR from end of `nef` (positions 9863 until the end of the genome) + + diff --git a/data_output/community/neherlab/hiv-1/unreleased/dataset.zip b/data_output/community/neherlab/hiv-1/unreleased/dataset.zip new file mode 100644 index 0000000000000000000000000000000000000000..88a28ac25514578c4575d7ca3d2ad2bd61a3f76c GIT binary patch literal 8263722 zcmeFaUvFJ!mZw+23=mkDAU8n}U~bO1W{`5HOp_uhN-lT;S>;wcRdyS)x~dC>f=yGD z#1uucNy;uK)mQlf$z5)OT;?{J`yd}6-(Zk05adhbd7iZoMbT1q1Jg4If;l|g`~9=l zZ~fM9z5Ct!9I9Mj{Nf+|aO1_3 zAOCpuS10F($A|kDhfi+Z`t;=J@@W5fwT!GzpRV>#R)6v7uioEUJ=wp+=yLV+^n7*k z@|(-=&kk1y$NLu-M^BFq_Aif4Pc~M!zIZM2qyOVy{m=gsA^m-a$d5j`|MSm2G3@G- 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b/data_output/community/neherlab/hiv-1/unreleased/genome_annotation.gff3 @@ -0,0 +1,27 @@ +##gff-version 3 +#!gff-spec-version 1.21 +#!processor NCBI annotwriter +##sequence-region NC_001802.1 1 9181 +##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=11676 +NC_001802.1 RefSeq region 1 9181 . + . ID=NC_001802.1:1..9181;Dbxref=taxon:11676;gb-acronym=HIV-1;gbkey=Src;genome=genomic;mol_type=genomic RNA;note=strain for reference annotation +NC_001802.1 RefSeq CDS 1799 2095 . + . Name=pro;gbkey=Prot;protein_id=NP_705926.1;product=aspartic peptidase;ID=id-NP_057849.4:489..587;experiment=DESCRIPTION:[PMID:2537531],DESCRIPTION:[PMID:2548279],DESCRIPTION:[PMID:3290901];Note=The proteinase domain of Gag-Pol (in the form of homodimer) mediates all the cleavages in the polyprotein. Cleaves itself from the polyprotein late in particle assembly. +NC_001802.1 RefSeq CDS 2096 3775 . + . Name=RT-p66;gbkey=Prot;product=p66 subunit;protein_id=NP_705927.1;ID=id-NP_057849.4:588..1147;experiment=DESCRIPTION:[PMID:1374166],EXISTENCE:[PMID:4316300];Note=transcribes single stranded viral RNA genome into double stranded proviral DNA%3B HIV-1 reverse transcriptase is composed of the p66 subunit (this protein) and the p51 subunit that lacks the RNAse H domain of the larger subunit +NC_001802.1 RefSeq CDS 2096 3415 . + . Name=RT-p51;gbkey=Prot;protein_id=NP_789739.1;ID=id-NP_057849.4:588..1027;product=reverse transcriptase p51 subunit;Note=HIV-1 reverse transcriptase is composed of the p66 subunit and the p51 subunit (this protein) that lacks the RNAse H domain of the larger subunit +NC_001802.1 RefSeq CDS 3776 4639 . + . Name=INT;gbkey=Prot;product=integrase;protein_id=NP_705928.1;ID=id-NP_057849.4:1148..1435;experiment=DESCRIPTION:[PMID:7983732],DESCRIPTION:[PMID:8035478];Note=mediates integration of the viral DNA into the infected cell chromosome +NC_001802.1 RefSeq CDS 336 731 . + . Name=p17;gbkey=Prot;product=matrix;protein_id=NP_579876.2;ID=id-NP_057850.1:1..132;experiment=DESCRIPTION:[PMID:12032547],DESCRIPTION:[PMID:1710290],DESCRIPTION:[PMID:8610175];Note=viral structural protein%3B forms the outer structural shell of HIV-1 virions%3B involved in the nuclear import of the HIV-1 preintegration complex +NC_001802.1 RefSeq CDS 732 1424 . + . Name=p24;gbkey=Prot;product=capsid;protein_id=NP_579880.1;ID=id-NP_057850.1:133..363;Note=viral structural protein%3B forms the core of HIV-1 virions;experiment=DESCRIPTION:[PMID:15208690],DESCRIPTION:[PMID:16041386],DESCRIPTION:[PMID:21248851] +NC_001802.1 RefSeq CDS 1425 1466 . + . Name=p2;product=p2;gbkey=Prot;protein_id=NP_579882.1;ID=id-NP_057850.1:364..377;Note=Processing of Gag-Pol by the protease domain dimer starts with cleavage between the p2 and nucleocapsid proteins. +NC_001802.1 RefSeq CDS 1467 1631 . + . Name=p7;gbkey=Prot;protein_id=NP_579881.1;product=nucleocapsid;ID=id-NP_057850.1:378..432;experiment=DESCRIPTION:[PMID:1639074],DESCRIPTION:[PMID:7666546];Note=viral structural protein%3B coats the genomic RNA inside the virion core%3B binds and delivers full-length viral RNAs into assembling HIV-1 virions +NC_001802.1 RefSeq CDS 1632 1679 . + . Name=p1;product=p1;gbkey=Prot;protein_id=NP_787042.1;ID=id-NP_057850.1:433..448;Note=important for virus infectivity%2C protein processing%2C and genomic RNA dimer stability +NC_001802.1 RefSeq CDS 1680 1835 . + . Name=p6;product=p6;gbkey=Prot;protein_id=NP_579883.1;ID=id-NP_057850.1:449..500;experiment=DESCRIPTION:[PMID:10085158],DESCRIPTION:[PMID:15527852];Note=important for incorporation of Vpr into assembling HIV-1 virions%3B helps mediate efficient virus particle release from infected cells +NC_001802.1 RefSeq CDS 4587 5165 . + 0 Name=vif;gbkey=CDS;gene=vif;product=Vif;locus_tag=HIV1gp3;protein_id=NP_057851.1;ID=cds-NP_057851.1;Dbxref=GenBank:NP_057851.1,GeneID:155459 +NC_001802.1 RefSeq CDS 5105 5319 . + 0 Name=vpr;gbkey=CDS;gene=vpr;product=Vpr;locus_tag=HIV1gp4;protein_id=NP_057852.2;ID=cds-NP_057852.2;exception=artificial frameshift;Dbxref=GenBank:NP_057852.2,GeneID:155807;Note=An artificial frameshift eliminating the orf-disrupting nucleotide at position 5320 is introduced to obtain the typical HIV-1 Vpr protein sequence. For this particular HIV-1 strain%2C HXB2%2C only a short (78 amino acid long) variant of the Vpr sequence can be obtained by translation of nucleotides 5105 through 5341 without the frameshift +NC_001802.1 RefSeq CDS 5321 5396 . + 1 Name=vpr;gbkey=CDS;gene=vpr;product=Vpr;locus_tag=HIV1gp4;protein_id=NP_057852.2;ID=cds-NP_057852.2;exception=artificial frameshift;Dbxref=GenBank:NP_057852.2,GeneID:155807;Note=An artificial frameshift eliminating the orf-disrupting nucleotide at position 5320 is introduced to obtain the typical HIV-1 Vpr protein sequence. For this particular HIV-1 strain%2C HXB2%2C only a short (78 amino acid long) variant of the Vpr sequence can be obtained by translation of nucleotides 5105 through 5341 without the frameshift +NC_001802.1 RefSeq CDS 5377 5591 . + 0 Name=tat;gbkey=CDS;gene=tat;product=Tat;locus_tag=HIV1gp5;protein_id=NP_057853.1;ID=cds-NP_057853.1;Dbxref=GenBank:NP_057853.1,GeneID:155871;Note=the length of Tat varies depending on virus strain or clade +NC_001802.1 RefSeq CDS 7925 7970 . + 1 Name=tat;gbkey=CDS;gene=tat;product=Tat;locus_tag=HIV1gp5;protein_id=NP_057853.1;ID=cds-NP_057853.1;Dbxref=GenBank:NP_057853.1,GeneID:155871;Note=the length of Tat varies depending on virus strain or clade +NC_001802.1 RefSeq CDS 5516 5591 . + 0 Name=rev;gbkey=CDS;gene=rev;product=Rev;locus_tag=HIV1gp6;protein_id=NP_057854.1;ID=cds-NP_057854.1;Dbxref=GenBank:NP_057854.1,GeneID:155908 +NC_001802.1 RefSeq CDS 7925 8199 . + 2 Name=rev;gbkey=CDS;gene=rev;product=Rev;locus_tag=HIV1gp6;protein_id=NP_057854.1;ID=cds-NP_057854.1;Dbxref=GenBank:NP_057854.1,GeneID:155908 +NC_001802.1 RefSeq CDS 5608 5856 . + 0 Name=vpu;gbkey=CDS;gene=vpu;product=Vpu;locus_tag=HIV1gp7;protein_id=NP_057855.1;ID=cds-NP_057855.1;Dbxref=GenBank:NP_057855.1,GeneID:155945;Note=Vpu and gp160 are translated from different reading frames of the same bicistronic mRNA +NC_001802.1 RefSeq CDS 5855 7303 . + . Name=gp120;gbkey=Prot;protein_id=NP_579894.2;ID=id-NP_057856.1:29..511;experiment=DESCRIPTION:[PMID:24179160];product=Envelope surface glycoprotein gp120;Note=mediates binding of HIV-1 to CD4 and cellular co-receptors%3B cooperates with gp41 to mediate fusion of viral membrane with cellular membrane during virus entry into cells +NC_001802.1 RefSeq CDS 7304 8338 . + . Name=gp41;gbkey=Prot;protein_id=NP_579895.1;ID=id-NP_057856.1:512..856;product=Envelope transmembrane domain;Note=cooperates with gp120 to mediate fusion of viral membrane with cellular membrane during virus entry into cells +NC_001802.1 RefSeq CDS 8343 8963 . + 0 Name=nef;gbkey=CDS;gene=nef;product=Nef;locus_tag=HIV1gp9;protein_id=NP_057857.2;ID=cds-NP_057857.2;transl_except=(pos:8712..8714%2Caa:Trp);Dbxref=GenBank:NP_057857.2,GeneID:156110;Note=This particular nucleotide sequence has a premature stop codon in place of a well-conserved tryptophan codon at position 8712-8714 that truncates the HIV1 Nef protein sequence to a 123 amino acids-long N-terminal portion (not shown). diff --git a/data_output/community/neherlab/hiv-1/unreleased/pathogen.json b/data_output/community/neherlab/hiv-1/unreleased/pathogen.json new file mode 100644 index 00000000..e20f8794 --- /dev/null +++ b/data_output/community/neherlab/hiv-1/unreleased/pathogen.json @@ -0,0 +1,95 @@ +{ + "alignmentParams": { + "penaltyGapOpen": 8, + "penaltyGapOpenInFrame": 12, + "penaltyGapOpenOutOfFrame": 14, + "gapAlignmentSide": "left", + "excessBandwidth": 50, + "terminalBandwidth": 50, + "kmerLength": 10, + "kmerDistance": 50, + "minMatchLength": 40, + "allowedMismatches": 8, + "windowSize": 30 + }, + "compatibility": { + "cli": "3.0.0-alpha.0", + "web": "3.0.0-alpha.0" + }, + "placementMaskRanges": [ + { + "begin": 0, + "end": 336 + }, + { + "begin": 5780, + "end": 5870 + }, + { + "begin": 6160, + "end": 6240 + }, + { + "begin": 6940, + "end": 7020 + }, + { + "begin": 8963, + "end": 9181 + } + ], + "deprecated": false, + "enabled": true, + "experimental": false, + "files": { + "pathogenJson": "pathogen.json", + "changelog": "CHANGELOG.md", + "examples": "sequences.fasta", + "genomeAnnotation": "genome_annotation.gff3", + "readme": "README.md", + "reference": "reference.fasta", + "treeJson": "tree.json" + }, + "official": true, + "qc": { + "frameShifts": { + "enabled": true, + "scoreWeight": 20 + }, + "missingData": { + "enabled": true, + "missingDataThreshold": 2000, + "scoreBias": 500 + }, + "mixedSites": { + "enabled": true, + "mixedSitesThreshold": 40 + }, + "privateMutations": { + "cutoff": 700, + "enabled": true, + "typical": 600, + "weightLabeledSubstitutions": 1, + "weightReversionSubstitutions": 2, + "weightUnlabeledSubstitutions": 1 + }, + "stopCodons": { + "enabled": true, + "ignoredStopCodons": [ + { + "cdsName": "p6", + "codon": 49 + } + ], + "scoreWeight": 40 + } + }, + "schemaVersion": "3.0.0", + "version": { + "tag": "unreleased", + "compatibility": { + "cli": "3.0.0-alpha.0", + "web": "3.0.0-alpha.0" + } + } +} diff --git a/data_output/community/neherlab/hiv-1/unreleased/reference.fasta b/data_output/community/neherlab/hiv-1/unreleased/reference.fasta new file mode 100644 index 00000000..b3c2a51c --- /dev/null +++ b/data_output/community/neherlab/hiv-1/unreleased/reference.fasta @@ -0,0 +1,155 @@ +>NC_001802 Human immunodeficiency virus 1, complete genome +GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCAC +TGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGT +GTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCA +GTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAG +GACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCC +AAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAA +GCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAAT +ATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTG +GCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTC +AGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGC +ATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAGCAAA +ACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAATCAGGTCA +GCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCAC +CTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGA +TACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAA +ACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAG +CTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGA +GAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGAT +GGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGG +GATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGAC +CAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAG +CTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAG +ATTGTAAGACTATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAG +CATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCC +AAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGA +TTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGCCAGAAATTGCAGGGCCCCTA +GGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGA +GACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTC +TTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGA +CAACAACTCCCCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCC +TCAGGTCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGA +AGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAG +ATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCA +GATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACC +TGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCAT +TAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAA +ACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGA +AAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGC +CATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAA +GAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAA +GAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGA +AGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGAT +TAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAG +TAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCA +ATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAAT +AGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCA +GAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACA +GCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGG +GAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACT +CCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGA +ACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATC +AAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTA +TCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACAC +TAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAAT +ATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACATGGTG +GACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTT +AGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGT +AGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGG +AAGACAAAAAGTTGTCACCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAAT +TTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGC +ATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAAT +AGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAAT +TGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTT +AGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAAT +GGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAA +ATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCA +ACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGG +ATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTT +AAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCAGCAATTTCAC +CGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCC +CTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTAT +AGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCAT +CCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGA +CATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAA +TTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGGAAAGGACCAGCAAAGCTCCT +CTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAG +AAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGC +AAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTT +CAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAA +GTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTC +TGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAA +AGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACT +TTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTA +GGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAG +CATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGG +ATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGAC +ACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCT +CCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGC +CATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTTCAGAATTGGGTGTCGACATA +GCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTA +GAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAA +AAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGC +AGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCT +CTATCAAAGCAGTAAGTAGTACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCA +TTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGG +AAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAA +GACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATG +GGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCAC +AGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGA +TGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCAC +AGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAA +AAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAA +GCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGAAGAATGA +TACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGATAAAAAACTG +CTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTA +TAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAA +CACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTA +TTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGG +ACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAAC +TCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGTCAATTT +CACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAATTAATTGTAC +AAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATT +TGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAA +ATGGAATAACACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAA +AACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAA +TTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAA +TAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACCCTCCC +ATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCC +TCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGA +TGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGA +CAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGC +ACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGC +TTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCCTCAATGACGCT +GACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAG +GGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCA +GGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGG +TTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAA +ATCTCTGGAACAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAA +TTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGA +ACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAA +TTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAAT +AGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTT +TCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGG +TGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTG +GGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGAT +TGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTG +GAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGC +CACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTG +TAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATA +AGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAA +TGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAAC +ATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAG +CACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGA +CTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGC +TAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCT +ACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTG +GATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAG +AGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAG +TGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATC +CGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACT +TTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATAT +AAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAG +CTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTT +C diff --git a/data_output/community/neherlab/hiv-1/unreleased/sequences.fasta b/data_output/community/neherlab/hiv-1/unreleased/sequences.fasta new file mode 100644 index 00000000..a0000b01 --- /dev/null +++ b/data_output/community/neherlab/hiv-1/unreleased/sequences.fasta @@ -0,0 +1,4803 @@ +>B.US.2013.0.505_0390a.WG12.MG196745 MG196745 +GATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATAGATGGGAAAAAATTCG +GCTAAGGCCAGGGGGAAAGAAAATGTATAAATTAAAACATATAGTATGGGCAAGCAGGGA +GCTAGAACGATTCGCAGTTAATCCCGGCCTGTTGGAAACATCAGAAGGCTGTAGACAGAT +ACTAGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAA +TACAGTAGCAACCCTCTATTGTGTACATCAAAGGATAGAAATAAAAGACACCAAGGAAGC +TTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAAGCAACAGCTGA +CACAGGAAACAACAGTCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAAGGGCA +AATGGTACATCAGGCTCTATCACCTAGGACTTTAAATGCATGGGTAAAAGTAGTAGAAGA +GAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTGTCAGAAGGAGCCACCCC +ACAAGATTTAAATACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTT +AAAAGAGACAATCAATGAGGAAGCTGCAGACTGGGATAGAGTGCATCCAGTGCATGCAGG +GCCTGTTGCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAGTTACTAG +TACCCTTCAGGAACAAATAGGATGGATGACAAGTAATCCACCTATCCCAGTGGGAGAAAT +ATATAAAAAATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGCCCCACCAG +CATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACAGGTTCTA +TAAAACTCTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTT +GTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATCTTAAAAGCATTAGGACCAGCAGC +TACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAG +AGTTTTGGCTGAAGCAATGAGCCAGGTAACAAATTCAGCTAATATAATGATGCAGAGAGG +CAATCTTGGGAACCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGTAGGACACAT +AGCCAAAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGGCA +CCAAATGAAAGATTGTAATAATGAGAAACAGGCTAATTTTTTAGGGAAAATCTGGCCTTC +CCACAGGGAAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGA +AGAGAGCCTCAGGTTCGGGGGGGAGACAACAACTTCCCCTCCGAAGCAGGAGTCGATAGA +CAAGGACCCGTATCCTTTGACCTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCACA +GTAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTA +TTAGAAGAAATGAATTTGCCAGGAAGGTGGAAACCAAAAATGATAGGGGGAATTGGAGGG +TTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAGATCTGTGGACATAAAGCTATA +GGTACAGTATTAGTAGGACCAACCCCTGTCAACATAATTGGAAGAAATCTGTTGACTCAG +ATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAG +CCAGGGATGGATGGGCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA +TTAATGGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATCTCAAAAATTGGGCCTGAA +AATCCATATAATACTCCAGTATTTGCTATAAAGAAAAAGGACAGTACTAAATGGAGAAAA +TTAGTAGATTTCAGAGAACTTAATAAGAAAACTCAAGACTTCTGGGAAGTTCAATTAGGA +ATACCACATCCCGCAGGGTTGAAAARGAAAAAATCAGTAACAGTACTGGATGTGGGTGAT +GCATATTTTTCAGTTCCCTTAGATGAAAACTTCAGGAAGTATACTGCATTTACCATACCT +AGTATAAACAATGCGACACCAGGGACTAGATATCAGTACAATGTACTTCCACAGGGATGG +AAAGGATCACCAGCAATATTCCAAAGTAGCATGATAAAAATCTTAGAGCCTTTTAGAAAA +CAAAACCCAGAAGTAGTTATCTACCAATACATGGATGATTTGTATGTAGGATCTGACCTA +GAAATAGAACGGCATAGAACAAAAGTAGAAGAACTGAGACAACATCTGTTGAAGTGGGGA +TTGACCACACCAGACAAAAAACATCAAAAGGAACCCCCATTTCTCTGGATGGGTTATGAA +CTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTACCAGAAAAAGACAGCTGGACT +GTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGA +ATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGACCCAAAGCGCTAACAGAAGTAGTA +GCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAGAGAACCA +GTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGG +CAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAG +TATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAGACAATTAACAGAGGCAGTGCAA +AAAATATCCACAGAAAGCATAGTAATATGGGGAAGGACTCCTAAATTTAAACTACCCATA +CAAAAAGAAACATGGGATATATGGTGGACAGACTATTGGCAAGCCACCTGGATCCCTGAG +TGGGAATTTGTCAATACCCCTCCTTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCC +ATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGA +AAAGCAGGATATGTTACTAACAAAGGAAGACAAAAGACTGTCACCATAACTGACACAACA +AATCAGAAAACTGAGTTACAAGCAATTCATTTAGCTTTGCAGGATTCGGGATCAGAAGTA +AACATAGTAACAGACTCACAATATGCATTAGGAATTATTCAGGCACAACCAGATAAAAGT +GAATCAGAAATAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTG +GCATGGGTACCAGCACATAAGGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGT +GCTGGAATCAGGAAAGTATTATTTTTAGATGGAATAGATAAGGCCCAAGAAGACCATGAA +AAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCA +AAAGAAATAGTAGCCAGTTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAA +GTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATC +CTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACA +GGGCAGGAAACAGCATACTTCATCTTAAAATTAGCAGGGAGATGGCCAGTAAARACAATA +CATACAGACAATGGCCCCAATTTCACCAGTACGACAGTTAAGGCCGCCTGTTGGTGGGCG +GGGATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCT +ATGAATAAAGAATTAAAGAAAATTATAGGGCAAGTGAGAGATCAGGCTGAACATCTTAAA +ACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGAG +TACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACTTACAAACTAAAGAATTA +CAAAAGCAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCC +CTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGAC +AATAGTGAAATAAAGGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAA +CAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGAATGAGGATTAGAACATGGAAAAG +TTTAGTAAAACACCATATACATATTTCAAAGAAAGCTAAGGGATGGATTTACAAACATCA +CTATGAAAACAATCATCCAAAAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAA +ATTGGTAATAACAACATATTGGGGTCTACAAACAGGAGAAAGAGACTGGCATTTGGGTCA +GGGAGTCTCCATAGAATGGAGGAAAAGGAGCTATAACACACAAGTAGACCCTAACCTAGC +AGATCAACTAATTCATCTGTATTACTTTGATTGTTTTGCAGACTCTGCTATAAGAAAGGC +CCTACTAGGACAAATAGTTAGCTCTAGGTGTGAACATCAAGCAGGACATAACAAGGTAGG +ATCGCTACAATACTTGGCACTAACAGCATTAATAGCACCAAAGCAGAAAAAGCCACCTTT +GCCTAGTGTTGCAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCA +CAGAGAGAGCCATACAATGAATGGACAATAGGGCTTTTAGAGGAGCTTAAGAATGAAGCT +GTTAGACACTTCCCCAGAGTATGGCTTCATGGCTTAGGGCAATATATCTATGAAACTTAT +GGGGATACTTGGGCAGGAGTGGAGGCCATAGTAAGAATCCTGCAACAACTGCTGTTTATT +CATTTCAGAATTGGGTGTCGACATAGCAGAATAGGAATTACCCAGAGGAGAACAAGAAAT +GGACCCAGTAGATCCTAGCCTAGATCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGC +TTGTAATACTTGCTATTGTAAACACTGTTGCCTACATTGCCAAGTTTGTTTCATGAAAAA +AGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAACGACGCAGCGCTCCTCCAGA +CAGTCAGAATAATCAAGTTCCTCTATCAAAGCAGTAAGTAATACATGTAATGTACTCTTT +ACAAATATTAGCAATAGTAGCCTTAGTAGTAGTAGCAATAATAGCAATAGTTGTATGGAC +TATAGTATTCATAGAATATAGGAAAATATTAAGACAAAAAAGAATAGACAGGTTAATTGA +TAGGATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGATGGGGACCAAGAACAACT +ATCAGCACTTATGGTGGAGATGGGGCATGATGCTCCTTGGAATGTTGATGATCTGTAGTA +CTAATCAACAATTGTGGGTCACAGTATATTATGGGGTACCTGTATGGAAGGAAGCAACCA +CAGTCCTCTTTTGTGCATCAGATGCTAAAGCACATGGTACAGAGGCACATAATGTTTGGG +CCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAATATTGGAAAATATGA +CAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAAATGCAAGAGGATATAATCA +GTTTATGGGATCAAAGCCTAAAGCCATGTGTAGAACTAACTCCACTCTGTGTCACTTTAA +ATTGCACTAAATTAAATCACAATGCCACTCAGAGTAACGAGACAGCAGAGGAAGGAGGAG +GAATGAAAAACTGCTCTTTCAATATCACCACAAGCATGAGAGATAAACAGCAAAAAGAAT +ATGGACTTTTCTATGACCTTGATATAGTACAAATAGATAATAGCACCTATAGGTTGAAAA +GTTGTAACACCTCAGTTATTAAACAAGCCTGTCCAAAGGTATCCTTTGAACCAATTCCCA +TACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATGATAAAACTTTTAATG +GATCAGGACCATGTACAAATGTCAGTACAGTACAATGTACACATGGAATTAGGCCAGTAG +TATCAACTCACCTACTGTTAAATGGCAGTCTAGCAGAAGGAGAAGATATAGTAATTAGAT +CTGAGAATTTCACAAACAATGCTAAAATCATAATAGTACAGCTGAACGAATCTGTAGTAA +TTAATTGTACAAGACCTAACAACAATACAAGAAGAGGTATAAATATAGGACCAGGGAGAG +CATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCACATTGTAACGTTAGTA +TAGTAAAATGGAACAAAACTTTAAATCTAGTAAAGGAAAAATTAAAAAAGCAGTTTAATA +ATACAACAATACTTTTTGATGAACCCTCAGGAGGGGACCCAGAAATCACAATGCACAGTT +TTAATTGTGGAGGGGAATTCTTCTACTGTAATTCAACACCACTGTTTAATGGGACTTGGC +AGAATATGACGAATATTACTGAAAACTTAAATATCACACTCCCATGCAGAATAAAGCAGA +TTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGAAGTA +TTCAATGTTCATCAAACATTACAGGGCTACTGTTAACAAGAGATGGTGGCATCACTAATA +ACACTAATAGCAGTAATGATGAGACCTTCAGACCTGGAGGGGGAGATATGAGGGACAATT +GGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCTTTAGGATTAGCACCCA +CCAGGGCAAGGAGACTAGTGGTGCAAAGAGACAAAAGAGCAGTGGGAATGGGAGCTATGT +TCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATGACGCTGACGG +TACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAAAACAACTTGCTGAAGGCTA +TTGAGGCGCAACAGCACCTGTTGCGACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAA +GAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACRGCTCCTGGGGATTTGGGGTTGCT +CTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATACTAGCTGGAGTAATAAATCTT +ACAATGACATCTGGGATAATATGACATGGATGCAGTGGGAGAGAGAAATTGACAATTACA +CAGAAGAAATATACAACTTACTAGAAAAATCGCAAAACCAGCAAGAAAAGAATGAGCAAG +AATTATTGGAATTGGATAAATGGACAAGTTTGTGGAGTTGGTTTGACATAACAAACTGGC +TGTGGTACATAAGAATATTCATAATGGTAGTAGGAGGCTTAATAGGTTTAAGAATAGCTT +TTGCTGTACTTTCTATAGCAAATAGAGTTAGGCAGGGATACTCACCCCTGTCGTTTCAGA +CCCACCACCCAAGCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAG +AAGGAGGCAAATACAGATCCAGCAGATTAGTGGATGGATTCTTAGCACTTATCTGGGACG +ATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAACAG +CGAGGACTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGGGGAACC +TCTTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTAAACGCCACAG +CTATAGCAGTAGCTGAAGGGACAGATAGGGTTATAGAAGTAGGAAGAAGAGCTTTTAGAG +CTATACTCCACATACCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAAGATG +GGTGGCAAGTGGTCAAAAAGTAGTTTCATTGGATGGCCTAGGGTAAGGGAAAGAATGAGA +CGAGCTGAGCCAGCAGCAGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTA +GAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGG +CTAGAAGCACAAGAGGAAGAGGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGA +CCAATGACTTACAAAGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTG +GAAGGGCTAATTTACTCTCAACAAAGACAAGATATTCTTGATCTGTGGGTCTACCACACA +CAAGGATACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCACTG +ACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGAGGAGGTAGAAAAGGCCAAT +GAAGGAGAGAATAACTGCCTGCTACACCCCATAAGCCAGCATGGGGTGGATGACCCAGAG +AAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCATGTGGCCCGAGAA +CTGCATCCAGAATATTATAAGAACTGATGACATATAAGAACTGCTGACATCGGAACTGCT +GACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCTG +GGCGGGACTGGGGAGTGGCGAG +>B.BR.2010.0.10BR_PE003.KT427747 KT427747 +CGTCTGTTGTATGACTCTAGTAACTAAAGATCCCTCAGACTATCTTAGCCAGTGTGAAAA +ATCTCTAGCAGTGGCGCCCGAACAGGGACCCGAAAGCGAAAGTAGAACCAGAGGAGCTCT +CTCGACGCARGACTCGGCTTGCTGAAGCGCGCACAGCAAGAGGCGAGGGGCGGCGACTGG +TGAGTACGCCAAAACTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATAGGTGCGAGAGCG +TCGGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAAAATTCAGTTAAAGCCAGGAGGA +AAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAAGGAGCTAGAACGATTCGCA +GTCAATCCTGGCCTTTTAGAGACATCAGAGGGCTGTAGACAAATACTGCAACAGCTACAA +CCATCCCTTCAAACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAGTCCTC +TAYTGTGTRCATCAAAAGATAGAKGTAAAAGACACCAAGGAAGCCTTAGATAGGATCGAG +GAAGAGCAAAACAAAAGTAAGAAAARGRCRCAGCAAGCAGCAGCTGACACAGGAAATAAG +CAAGCAGCCRCTAACACAGGAAGCAGCARCCARGTCAGCCAAAATTACCCTATAGTRCAA +AATCTTCAGGGGCAAATGGTACATCARGCCATATCACCTAGAACTTTAAATGCATRGGTA +AAAGTAGTAGAAGARAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTACAGCAYTATCA +GAAGGAGCCACCCCACARGATTTAAACACCATGYTAAACACAGTGGGRGGACATCAAGCA +GCTATGCAAATGTTAAAAGAGACCATCAATGARGAAGCTGCAGAATRGGATAGATTGCAC +CCAGCACAGGCAGGGCCTGTTGCGCCAGGCCAGATGAGAGACCCAAGGGGAAGTGACATA +GCAAGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAGTAATCCACCTATC +CCAGTAGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAAAATAGTAAGAATG +TATAGCCCTACCAGTATTCTGGACATAAAACAGGGACCAAAAGAGCCTTTTAGAGACTAT +GTAGACAGGTTCTATAAAACTTTAAGAGCAGAGCAAGCTTCACAGGATGTAAAAAATTGG +ATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGCAAGACCATTTTAAAAGCA +TTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCC +GGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGCAACAGCTACTTCAACTGCC +ATAATGATGCAGAAAGGCAATTTTAGGAATCAAAGAAAGACTGTTAAGTGTTTCAATTGT +AGTAAAGACAGGCACATAGCAAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGCTRGAAA +TGTRGAAAGGAAGGACATCAAATGAAAGATTGYACTGAGAGACAGGCTAATTTTTTARGG +AAAATCTGGCCTTCCCACAAGGGRAGGCCARGGAACTTTCTCCAGAGCAGGCCAGAGCCA +ACAGCCCCRCCAGAGCCAACAGCCCCACCAGAAGAGAGCTGCAGGTTTGGGGAAGAGACA +ACAACTCCCTCTCAGAAGCAGGGGCCAATAGACAAGGAGCTATATCCTTTAACCTCCCTC +AAATCACTCTTTGGCAACGACCCCTCGTCCCAGTAAGGATAGGGGGGCAAMTAAAGGAAG +CTCTGCTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTGCCAGGAAAAT +GGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAGCAGA +TACTCGTAGAAATCTGTGGGCACAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTG +TCAACATAATTGGAAGAAATCTGTTGACGCAGATTGGCTGCACTTTAAATTTCCCCATTA +GTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAAC +AATGGCCATTGACAGAARAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAA +AGGAAGGAAAAATTTCAAAAATTGGGCCCGAAAACCCATACAATACTCCAATATTTGCCA +TAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTGGATTTCAGAGAACTTAATAAGA +GAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAGAAGA +AAAAATCTGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAA +ACTTCAGGAAGTATACTGCCTTTACCATACCCAGTGTTAACAATGAAACACCAGGGGTTA +GATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTA +GCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTACCAAT +ACATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAG +AGGAACTGAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGA +AGGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAAC +CTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAA +AATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAACTCC +TTAGGGGAACCAAATCACTAACAGAGGTAGTACCACTAACAGTAGAAGCAGAGTTAGAGC +TGGAAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTTTACTATGACCCATCAA +AAGACTTAATAGCAGAAATACAGAAGCAAGGGCAAGGTCAGTGGACATATCAAATATATC +AAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTA +ATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAACCACAGAGAGCATAGTAATAT +GGGGAAAGATTCCTAAATTTAAACTACCCATACAAAAGGAAACATGGGAAGCATGGTGGA +TAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAG +TAAAATTATGGTACCAGTTAGAAAAGGAACCCATTGTGGGAGCAGAGACTTTCTATGTAG +ATGGAGCAGCTAGTAGGGAAACTAGATTAGGAAAAGCAGGATATGTTACTGACAGAGGAA +GACAAAAAATTGTTCCCCTAACGGACACAACGAATCAGAAGACTGAGCTACAAGCAATTC +ATCTAGCTCTGCAGGATTCGGGGTCACAAGTAAATATAGTAACAGACTCACAATATGCAT +TAGGAATTATTCAAGCACAACCAGATAAAAGTGAATCAGAGATAGTCAATCAAATAATAG +AGCAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTG +GAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAAAGTACTATTTTTAG +ATGGAATAGATAAGGCCCAAGAGGAGCATGAAAAATATCACAATAATTGGAGATCAATGA +CTAGTGAGTTTAACATACCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGACAAAT +GTCAGCAAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGC +TAGACTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGAT +ATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAAGAAACAGCATACTTTCTCTTAA +AATTAGCAGGAAGATGGCCAGTAAAAACAATACACACAGACAATGGCAGTAATTTCACCA +GTGCTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGTATTCCCT +ACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAGATTATAG +GACAGGTAAGAGATCAAGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTACTTATCC +ACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCGGGAGAAAGAATAATAGACA +TAATAGCAACAGACATACAAACCAAAGAACTACAAAAACAAATTACAAAAATACAAAATT +TTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCAGCAAAGCTTCTCT +GGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAGATAAAAGTAGTGCCAAGAA +GAAAAGCAAAGATCCTTAGGCATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAA +GTAGACAGGATGAGGATTAATACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCA +AAGAAAGCTAATAAATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGT +TCAGAAGTACACATCCCACTAGGGGATGATACCTTAGTAATAACAACATATTGGGGTCTG +CATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGG +AGATACAGTACACAAGTAGACCCTAACCTAGCAGACCAACTAATCCACATGTACTATTTT +GATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGGGATAGAGTTAGACCTAGG +TGTGAGTATCAAGCAGGACATAATAAGGTAGGATCTCTACAGTACTTGGCACTAACAGCA +TTAATAAAACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAGGAAACTGACAGAGGAT +AGATGGAACAAGCCCCACAGGACCACGGGCCGCAGAGGGAACCATACAATGAGTGGACAC +TAGAGCTTTTAGAAGAACTTAAGAATGAAGCTGTTAGACATTTCCCTAGGCCATGGCTCC +ATAACTTAGGACAATATATCTATGAAACTTATGGAGACACTTGGGCAGGAGTGGAAGCCA +TAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGATGTCAACATAGCA +GAATAGGCATTATTCGACACAGGAGAGCAAGGAATGGAGCCAGTAGATCCTAGRCTAGAG +CCCTGGCAGCATCCAGGAAGTCGGCCTACAACTCCTTGTACCAAATGCTATTGTAAAAAA +TGTTGCTTTCATTGCCAAGTTTGCTTTGTAACAAAAGGCTTAGGCATCTCCTATGGCAGG +AAGAAGCGGAGACAGCGACGAAGACCTTCTCAAGACAGTAAGACTCATCAAGCTTCTCTA +CCAAAGCAGTAAGTAGTACATGTAATGAACCCTTTAAMCATAGYATCAATAGCAGGCTTA +GTAGTAGCAGCAGTAMTAGCAATAGTTGTGTGGACTATAGTGTACCTAGAATATAGGAAA +ATATTAAAACAAAGAAAAATAGACAGGTTAATTGATAGAATAAGGGAAAGAGCAGAAGAC +AGTGGCAATGAGAGCGAGGGGGATCATGAAGAGTTGGCAACACTTGTGGAGATGGGGCAC +CATGCTCCTTGGGATGTTGATGATCTGTAATGCTACAGAACAACTGTGGGTCACAATCCA +TTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAA +AGCAGTTGAAACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCC +TAACCCACAAGAAATAAATTTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATGA +CATGGCAGAACAGATGCATCAGGATATAATCAGTTTATGGGACCAAAGCCTAAAGCCATG +TGTAAAATTAACCCCACTCTGTGTTATTTTAAATTGCACTGATGTKRGKAMTGCTAATAG +TACTACTAATGATACTAAGAGGACTGTAGAAAACAGTATGGAGGGAGAAATAAAAWAGTG +CTCTTTCAATATCACCACAGGCATAAGAGATAAGGTGCGGAAAGAATATGCATATTTTAA +TAAACTTGATGTAACACCAATAGATGATACAGGTAATAATACAGACTATACAAAATATAC +CTTAATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCTAAGACAACCTTTGAACC +AATTCCMATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATAATAAGAC +ATTCAATGGAACAGGACCATGTAAAAATGTTAGCACAGTACAATGTACACATGGAATTAG +GCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGACATAGTAAT +TAGATCTGAAAATCTCACAGACAATACTAAAACCATAATAGTACAGCTGAACTCATCTGT +AACAATTAATTGTACAAGACCCAACAACAATACAAGAAAAGGTATACATATGGGATGGGG +AAGAGCATTTTATGCAACAGGACAAATAATAGGAAATATAAGACAAGCACATTGTAACCT +TAGTACAGCAGATTGGAACAGCACTTTAGAACAGATAGCTAGAAAATTAAATGAACACTT +TAATAAAACAAYARTWKTTTTTAATCAATCCTCAGGAGGGGACCCAGAAATTGTAATGCA +CAGTTTTAATTGTGGAGGAGAATTTTTCTATTGTAATACAACACAACTGTTTAATGGTAA +TTTGAATAACAGTATTTGGACATTTAATGGTAATAATAAGACTGAGAATATCACACTCCC +ATGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCC +TCCCATCCAAGGACTAATTAGATGTTCATCAAAGATTACAGGGGTGCTATTAACAAGAGA +TGGTGGTWYAGRGAACAACGGGTCTGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGA +CAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCAATAGGAGTAGC +ACCCTCCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAACGCTAGG +AGCTATGTTCCTTGGGTTCTTGGGAACAGCAGGAAGCACTATGGGCGCAGCGTCATTGAC +GCTGACGGCACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCT +GAGGGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCT +CCAGGCAAGAGTCCTGGCTGTGGAGAGATACCTAAGGGATCAACAGCTCCTAGGGATCTG +GGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATAAGACTTGGAGTAA +TAAATCTATGCATGACATTTGGGATAACATGACCTGGATGGAGTGGGAGAGAGAAATTGA +CAATTACACACAAGTAATATACAACTTGCTTGAAGAATCGCAGAACCAACAAGAAAAAAA +TGAACAAGACTTATTGGCATTGGATAAGTGGGCAAGCTTGTGGAATTGGTTTAACATATC +AAATTGGCTGTGGTATATAAAAATATTCATCATGATAGTAGGAGGCTTAGTAGGGTTAAG +AATAGTTTTTGTTGTACTTTCACTAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTC +ATTCCAGACCCGCCTCCCAGCCCCGAGGGGACTCGCCAGGCCCGAAGGAACCGAAGAAGA +AGGTGGAGAGAGAGACAGAGACACATCAACAAGATTAGTAACTGGATTCTTAGCACTCAT +CTGGGTCGACTTGAGGAGCCTGTGCCTCTTCATCTACCACCAATTGAGAGACTTACTCTT +GATTGCAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAAYAYCT +GTGGAGYCTCCTGCAGTATTGGRGYCAGGAACTAAAGARTAGTGCTATTARTTTGCTTAA +CGCCACAGCCATAGTAGTAGGCGAGGGGACAGATAGGATTATAGAAGCAGTACAAAGACT +TGGTAGAGCTGTTCTCCACATACCTAGAAGAATAAGACAGGGCGCAGAAAGGGCTTTGCA +ATAAGATGGGGGGCAAGTGGTCAAAAAGTAGGATTGTCGGATGGTCTGCTGTGAGGGAAA +GAATGAGACGAGCTGAGCCAGCAGCGAGACGAGCTGAGCCAGCAGCAGACGGGGTGGGAG +CAGTATCTCGAGATTTAGAAAAATATGGAGCAATCACAAGTAACAACACAGCAGCTACTA +ATGCTGATTGTGCCTGGCTAGAAGCACAAGAAGAGGAGGAGGTAGGTTTTCCAGTCAGAC +CTCAGGTACCTTTAAGACCAATGACTTACAAAGCAGCTGTAGATCTTAGCCACTTTTTAA +AAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCACGAGGAGACAAGAGATCCTCGATC +TGTGGGTCTACCACACACAAGGCTTCTTCCCTGATTGGGACAACTACACACAAGGGCCAG +GGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGACCCAGAGC +AGGTAGAAAAGGCCAGTGAAGGAGAAACCAACTGCTTGTTACACCCTATGAACCAGCATG +GAGTGGATGACCCAGAGAAAGAAGTGTTGCAGTGGAAGTTTGACAGTCGCCWAGCATTTC +ATCACGTGGCCCGAGAGCTGCATCCGGAATACTACAAA +>B.US.2004.0.ES8_43.EF363126 EF363126 +TGGAAGGGCTAATTTATTCCCAGAAAAGACAAGAGATCCTTGATCTGTGGGTCTACCACA +CACAAGGCTTCTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCCC +TGACCTTCGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAAGTAGAAGAAGCCA +ATGAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCAGCATGGGATGGATGACCCAG +AGAAAGAAGTGCTAGTATGGAGGTTTGACAGCCGCCTAGCATTTCATCACTTGGCCCGAG +AGCTGCATCCGGAGTTCTACAAGGACTGCTGACACTGTGCTTTCTACAAGGGACTTTCCG +CTGGGGATTTCCAGGGGAGGCGTGACCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGAT +GCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATTTGA +GCCTGGGAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCT +TTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCT +CAGACCATTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCGGAAA +GCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACG +GCAAGAGGCGAGAGGCGGCGACTGGTGAGTACGCCGAAATTTTTGACTAGCGGAGGCTAG +AAGGAGAGAGATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTGGATAGATGGGA +GAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAAGTACAAATTAAAACATATAGTATGGGC +AAGCAGGGAGCTAGAACGATTCGCAGTCAATCCTGGCCTACTAGAAACATCAGGAGGCTG +TAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAGGAACTTAGATC +ATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGATGTAAAAGACAC +CAAAGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCA +AGCAGCAGCTGACACAGGAAACAGCAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAA +CATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAA +AGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGA +AGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGC +CATGCAGATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCC +AGTACATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGC +AGGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAATAATCCACCTATCCC +AGTAGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAAAATAGTAAGGATGTA +TAGTCCTTCCAGCATTCTGGACATAAAACAAGGACCAAAGGAACCCTTTAGGGACTATGT +AGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAAGTAAAAAATTGGAT +GACAGAAACCTTGCTGGTCCAAAATTCGAACCCAGATTGTAAAACTATTCTAAAAGCATT +GGGGCCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGC +CCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCCACCATAAT +GATGCAGAAAGGCAATTTTAGGAACCAAAGAAAGGCTGTTAAGTGTTTCAATTGCGGCAA +AGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGG +AAGGGAAGGACACCAAATGAAAGATTGTACAGAAAGACAGGCTAATTTTTTAGGGAAAAT +CTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCTTCAGAGCAGGCCAGAGCCAACAGC +CCCATCAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGATAACAACTCCCCCTCA +GAAACAGGAGACGCTGATAGACCTGGACAAGGAACTGTATCCCTCAGCCTCCCTCAAATC +ACTCTTTGGCAACGACCCCTTGTTAAAATAAAGATAGGGGGGCAAGTAAAGGAAGCTCTA +TTAGACACAGGAGCAGATGATACAGTGTTAGAAGAAATAAGTTTGCCAGGAAGATGGAAA +CCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATCAGATACCC +ATAGAAATCTGTGGGCATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAAC +ATAATTGGAAGAAATCTGTTGACTCAACTTGGTTGCACTATAAATTTTCCCATTAGTCCT +ATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGG +CCATTGACAGAAGAGAAAATAAAAGCATTAGTAGAGATCTGTACAGAAATGGAAAAAGAA +GGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAG +AAAAAAGACAGTACCAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACT +CAGGACTTCTGGGAGGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAA +GCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTC +AGGAAGTATACTGCATTTACCATACCTAGTATGAACAATGAGACACCAGGGATTAGGTAT +CAGTACAATGTGCTCCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATG +ACAAAAATCTTAGAGCCTTTTAGAAATCAAAATCCAGACATAGTTATCTATCAATACATG +GATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAA +CTGAGGGAACATCTGTTGAAATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAA +CCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTGCAGCCTATA +GTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTG +AATTGGGCAAGTCAGATATACCCAGGGATTAAAGTAAAGCAATTATGTAGACTCCTTAGG +GGAGCCAAGGCACTAACAGAAGTAATACCACTAACAAAAGAAGCAGAACTAGAACTGGCA +GAAAACAGGGAAATTCTAAAAGAGCCAGTACATGGAGTGTATTATGACCCAACAAAAGAC +TTAATAGCAGAAATACAGAAGCAGGGGCAAGACCAATGGACGTATCAAATTTATCAGGAG +CCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAAAGAGGGGTACCCACACTAATGAT +GTAAAACAGTTAACAGAGGCAGTGCAAAAAGTAAGCACAGAAAGTATAGTGATATGGGGA +AAGATTCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAG +TATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAA +TTATGGTACCAGCTAGAGAAAGAACCCATAATAGGAGCAGAAACATTCTATGTAGATGGG +GCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGGAAACAA +AAAGTTATCTCCCTAACTGACACAACAAATCAGAAAACTGAGTTACATGCAATTCATCTA +GCTTTACAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGG +ATCATTCAAGCACAGCCAGATGAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAG +TTAATAAAAAAGGACAAAGTCTACCTGACATGGGTACCAGCGCACAAAGGAATTGGAGGA +AATGAACAAGTAGATAAATTAGTCAGTACTGGAATTAGGAAAGTACTATTTTTAGACGGA +ATAGATAAAGCCCAAGAAGAACATGAGAAATATCACAGCAATTGGAGAGCAATGGCTAGT +GATTTTAACCTGCCACCTGTGGTAGCCAAAGAAATAGTAGCCAGCTGTGATAAATGTCAG +CTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGAT +TGTACACATTTAGAAGGAAAAATTATCATAGTAGCAGTTCATGTAGCCAGTGGGTATATA +GAAGCAGAAGTCATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAGGTTA +GCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTACT +ACAGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAACAGGAATTTGGCATTCCCTACAAT +CCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAG +ATAAGAGATCAGGCTGAGCATCTCAAGACAGCAGTACAAATGGCAGTATTCATTCACAAT +TTTAAAAGAAAAGGGGGGATTGGGGGGTGCAGTGCAGGGGAAAGAATAGTAGACATAATA +GCATCAGACATACAAACTAAAGAATTACAAAAACAAATTTCAAAACTTCAAAATTTTCGG +GTTTATTTCAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTCTGGAAA +GGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAAATAAAAGTAGTGCCAAGAAGAAAA +GCAAAGATACTTAGGCATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGA +CAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATATCTCAAAGAA +AGCTGACAGATGGTTTTATAGACATCATTTTGAAAGCACTCATCCAAAAATAAGTTCAGA +AGTACACATCCCATTAGGGGATGCAGAATTGGTAATAATAACATATTGGGGTCTACATAC +AGGAGAAAGAGATTGGCATTTGGGACAAGGAGTCTCCATAGAATGGAGGAAAAAGAGATA +TAGCACACAAGTAGACCCTAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTG +TTTTACAGAATCTGCCATAAGAAATGCCATCTTAGGAAATAGAGTTAGTCCTAGGTGTGA +ATATCAAGCAGGACATAACAAGGTAGGATCCCTACAGTACTTAGCACTAGCAGCATTAGT +AACACCAAAAAAGACAAAGCCACCTTTGCCTAGTGTCGCGAAACTGACAGAGGATAGATG +GAACAAGCCCCAGAGGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAG +CTTTTAGAGGAGCTTAAGAGTGAAGCTGTGAGACATTTTCCTAGGCTATGGCTCCATAGC +TTAGGGCAACATATCTATGAAACTTATGGGGACACTTGGGCAGGAGTGGAAGCCATAATA +AGAATTCTGCAACAACTGCTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGAATA +GGCATTACCCGACAGAGGAGAACAAGAAATGGAGCCAGTAGATCCTAGACTGGAGCCCTG +GAAGCATCCGGGGAGCCAGCCTAGGACTGCCTGTACCACTTGCTATTGTAAAAGGTGTTG +CTATCATTGCCAAACTTGCTTCATAACGAAAGGCTTAGGCATCTCCTATGGCAGGAAGAA +GCGGAGACAGCGACGAGGAGCTCATCAGGACAGTGAGACTCATCAAGCGTCTCTATCAGA +GCAGTAAGTAGTACATGTAATGCAACCTTTACAGATATTAGCAATAGTAGGATTAGTAGT +AGCAGCAATAATAGCAATAATTGTATGGTCTATAGTACTTATAGAATATAGGAAAATATT +AAGACAGAAAAAAATAGACAGGATAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGG +CAATGAGAGTGATGGAGACCAGGAAGAATTGGCAGCACTGGTGGTGGAAAGGGGGCATCA +TGCTCCTTGGGATGTTAATGATCTGTAATGCTGAAGAACAGTTGTGGGTCACAGTCTATT +ATGGGATACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAG +GATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCA +ACCCACAAGAAGTAGTAATGGCAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACA +TGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGTCTAAAACCATGTG +TAAAATTAACCCCACTCTGTGTCACTTTAAATTGTACTGATGTGGAGAAGAATAATACTA +CTAATACCACAACTACTAGTACCACAACTACTATTACCCCACTAATGATGGAGAAGGGAG +AAATAAAAAATTGCTCTTTCAAAATCACCACAAACATGAGAGATAAGGTGCAGAAAGAAT +TTGCACTTTTTCATAAATTTGATGTAGTACGAATGGAAGAAGATAATACTGATAATACTA +GCTATAGGTTGGTAAGTTGTAACACCTCAACCATTACACAGGCCTGTCCAAAGGTATCCT +TTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTGAAGTGTAATA +ATAAGGAGTACAATGGAACAGGACCGTGTACAAATGTTAGCACAGTACAATGTACACATG +GAATTAGGCCAGTAGTATCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATA +TAGTAATTAGCTCTGCCAATCTCACAAACAATGCTAAAATCATAATAGTGAAACTGAATG +AATCTGTAGCACTGAACTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCTATAG +GACCAGGCAGAGCATTTTATGCAACAGGAAATATAATAGGAGATATAAGACAAGCACATT +GTAACCTTAGTAGTACACAATGGAGTAACACTTTAAAAAGGGTAGCTATAAAATTAGGAG +AACAATTTAATAATAAAACAATAGCCTTTAAACAATCCTCAGGAGGGGACCCAGAAATTG +TAATGCTCAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACATCACAACTGTTTA +ATAACACTTGGAATGGTACTGAGTTAAGTAATAGTAAAGAAAATGGTAATATCACACTCC +AATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGGAAAGCAATGTATGCCC +CTCCCATCAGAGGACAAATTAGATGTGTGTCAAATATTACAGGGCTGCTATTAACAAGAG +ATGGTGGTACAAACAGCACCACCGAGACCTTCAGGCCTGCAGGAGGAAATATGAGGGACA +ATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCAC +CCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGCGGGAATAGGAGCTT +TTTTCCTTGGGTTCTTGGGACTAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGA +CGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGG +CTATTGAGGCGCAACAGCACATGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGG +CAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAGCAGCTCCTAGGGATTTGGGGTT +GCTCTGGAAAACTCATCTGCACCACTGCTGTGCCTTGGAATAGTAGTTGGAGTAATAAAA +CTATGGACCAGATTTGGAATCACACAACCTGGATGCAATGGGAAAGAGAAATTGATAATT +ATACAGACTTAATATACTCCTTAATTGAAGACTCGCAAAACCAACAAGATAAGAATGAAC +AAGAATTATTGGAATTAGATAAATGGGCAAATTTGTGGAATTGGTTTGACATAACAAACT +GGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAG +TTTTTATTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCCTTATCGTTCC +AGACCCGCCTCCCAGCTCAGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTG +GAGAGCGAGACAGAGACAGATCCGAATCCTTAGTGAATGGATTCTTAGCAATCATCTGGG +TCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTG +TGACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAGATCCTCAAATACTGGTGGA +ATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAACGCCA +CCGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTGTTACAAAGAGCTTGGA +GAGCTATTCTCCACATACCTACAAGAATAAGACAAGGCTTGGAAAGGGCTTTGCTATAAG +ATGGGTAATAAGTGGTCAAAAAGTAAGCTGGGGGGATGGTTCACTGTAAGGGAAAGAATG +AGAAGAACTGAACCAGCAGCAGATGGGGTGGGACCAGCATCTCGGGACCTAGAAAGACAT +GGAGCACTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCA +CAAGAGGAGGAGGAGGTGGGTTTTCCAATCAGACCTCAGGTACCTTTAAGACCAATGACT +TATAAGTCAGCTCTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTA +ATTTATTCCCAGAAAAGACAAGAGATCCTTGATCTGTGGGTCTACCACACACAAGGCTTC +TTCCCTGACTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCCCTGACCTTCGGA +TGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAAGTAGAAGAAGCCAATGAAGGAGAG +AACAACTGCTTGTTACACCCTATGAGCCAGCATGGGATGGATGACCCAGAGAAAGAAGTG +CTAGTATGGAGGTTTGACAGCCGCCTAGCATTTCATCACTTGGCCCGAGAGCTGCATCCG +GAGTTCTACAAGGACTGCTGACACTGTGCTTTCTACAAGGGACTTTCCGCTGGGGATTTC +CAGGGGAGGCGTGACCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAA +GCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATTTGAGCCTGGGAGCT +CTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTTGAGTGCTTC +AAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCATTTT +AGTCAGTGTGGAAAATCTCTAG +>B.US.2012.0.505_0997a.WG03.MG196879 MG196879 +CTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTAGAAAATCTCTAGCAGTGG +CGCCCGAACAGGGACTTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACT +CGGCTTGCTGAAGCGCGCACAGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAA +CTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCGGTATTAAGCGG +GGGAGAATTGGATAGATGGGAAAGAATTCGGCTAAGGCCAGGGGGAAAGAAAAAATATAG +ACTAAAACATATAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCAGTTAATCCTGGCCT +GTTAGAAACAGCAGAAGGCTGTAAACAAATACTGGAACAGCTACAACCAGCCATTCAGAC +AGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCA +AAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGATAAAATAGAGGAAGAGCAAAACAA +AAGCAAGAAAAAGGTACAGAAAGTAGCGGCTGACGCAGGAAACAGCAGCAATGTCAGCCA +AAATTACCCTATAGTGCAGAACGGCCAGGGGCAAATGGTACATCAGGCCATATCACCTAG +AACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACC +CATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACAC +AGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATTAATGAGGAGGCTGC +AGAATGGGATAGATTGCATCCAGCGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGA +ACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGAT +GACAGGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATT +AAATAAGATAGTAAGGATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAA +AGAACCCTTTAGAGATTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTC +ACAGGAGGTGAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCAAACCCAGATTG +CAAAACTATTTTAAAAGCATTGGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATG +TCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAATTTTGGCGGAAGCAATGAGCCAAGT +AACAAATTCAGCTACCATAATGATGCAGAGAGATAATTTTAGGAATCAAAGAAAGACTGT +TAAGTGCTTCAATTGTGGCAAAACAGGGCACATAGCCAAAAATTGCAGGGCTCCTAGGAA +AAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGCATTGAGAAGCA +GGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCCTCA +GAGCAGAACAGAGCCAACAGCTCCACCAGAAGAGAGCTTCGGGTTTGGGGAAGAGATAAC +AACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACGGTATCCTTTAACTTCCCTCAG +ATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAAATAGGGGGGGCAACTAAAGGAAGC +TCTATTAGATACAGGAGCAGATGATACAGTACTAGAAGCAATGAATTTGCCAGGGAGATG +GAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGAGAATATGATCAGAT +ACCCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGT +CAACATAATTGGAAGAAATCTGTTGACGCAGATTGGTTGCACTTTAAATTTTCCCATAAG +TCCTATTGAAACTGTACCAGTAAAATTAAAACCAGGAATGGATGGCCCAAAAGTTAAACA +ATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAA +GGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCAAT +AAAGAAAAAAGACAGTACTAAATGGAGARAATTAGTAGATTTCAGAGAACTTAATAAAAG +AACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAA +AAAATCAGTAACAGTATTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGA +CTTCAGGAAGTATACTGCATTCACCATACCTAGTGTAAACAATGAGACACCAGGGATTAG +ATATCAGTACAATGTGCTTCCACAGGGATGGAAGGGATCACCAGCAATATTCCAAAGTAG +CATGATAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATA +CATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGA +AGAGCTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAA +AGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCC +TATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAA +ATTAAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTTAGGCAATTATGTAAACTCCT +TAGGGGAGCCAAAGCATTAACAGAAGTAATACCATTAACAGAAGAGGCAGAACTAGAACT +GGCAGAAAATAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCTTCAAA +AGACTTAATAGCAGAAATACAGAAACAGGGGCAGGGCCAATGGACATATCAAATTTATCA +GGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTACCCACACTAA +TGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAGGCATAATAATATG +GGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAAGAAACATGGGAAATATGGTGGAC +AGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGT +AAAATTATGGTACCAGTTAGAAAAGGAACCCATAGCAGGGGCAGAAACTTTCTATGTAGA +TGGGGCAGCTAACAGGGAAACTAAATTAGGAAAAGCAGGATATGTTACTGACAAAGGAAG +ACAAAAAGTTGTCCACCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTA +TCTAGCTTTGCAAGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATT +AGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGA +GCAGTTGATAAACAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGG +AGGAAATGAACAGGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGA +TGGAATAGATAAGGCCCAGGAAGACCATGAAAAATATCACAGCAATTGGAGAGCAATGGC +TAGTGACTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATG +TCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACT +AGACTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATA +TATAGAAGCAGAAGTTATTCCAGCAGAAACGGGGCAGGAAACAGCATACTTTCTCTTAAA +ATTAGCAGGAAGATGGCCAGTAAAGACAATACATACAGACAATGGTAGCAATTTCACCAG +TGCTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAACAGGAATTTGGCATTCCCTA +CAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGG +ACAAGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCA +CAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGACAGAATAATAGACAT +AATATCATCAGATATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTT +TCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTG +GAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAG +AAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAG +TAGACAGGATGAGGATTAGAACATGGAAAAGTCTAGTAAAACACCATATGTATAGATCAA +AGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCCACATCCAAGAGTAAGCT +CAGAGGTACACATCCCAATAGGGGATGCTAGACTGGTAATAACAACATATTGGGGTCTGC +ATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCGTAGAATGGAGGACAAGGA +GATATGGAACACAAGTAGACCCTGGCCTAGCAGACCAACTAATCCATCTGTATTACTTTG +ATTGTTTTTCAGAATCTGCCATAAGAAAAGCCATATTAGGACATATAGTTAGTCCTAGTT +GTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAGTACTTGGCACTAGCAGCAT +TAGTACCACCAAAACAGAGAAAGCCACCTCTGCCTAGTGTTACAAAACTGACAGAAGACA +GATGGAACAAGCCCCAGAAAACCAAGGGCCACAGAGGGAGCCGTACAATGAGTGGACACT +AGAGCTCCTAGAGGAGCTTAAGAGTGAAGCAGTTAGACATTTTCCTAGGGTGTGGCTCCA +TGGCTTGGGGCAACATATCTATGAAACTTATGGTGATACTTGGGCAGGAGTGGAGGCCAT +AATAAGAATTTTGCAACAACTGCTTTTTATTCATTTCAGAATTGGGTGTCGACATAGCAG +AATAGGCATTATTCAACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCCTAGAGC +CCTGGAAGCATCCAGGAAGTCAGCCTAAGACTGCCTGTACCAAGTGCTATTGTAAAAAGT +GTTGCTTTCACTGCTATAAGTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGA +AGAAGCGGAGACAACGACGAAGAACTCCTCAGGACCGTCAGACTCATCAAGTTTCTCTAT +CAAAGCAGTAAGTACTAAATGTAATGAGCGCTTTAAAGATAGTAGCAATAGTAGCATTAG +TAGTAGGAGCAATAATAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAA +TATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACA +GTGGCAATGAGAGTGACGGGGATCAGGAGGAATTGTCAGCACTTGTGGAAATGGGGCACC +TTGCTCCTTGGGATGTTAATAATCTATAGTGCTGCAGATAATTTGTGGGTCACAGTCTAT +TATGGGGTACCTGTGTGGAAAGAAGCAACCACTACTTTATTTTGTGCATCAGATAGTAAA +GCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCC +AACCCACAAGAAGTAGTATTGGAAAATGTAACAGAAAATTTTAACATGTGGGAAAATAAC +ATGGTAGAACAGATGCATGGGGATATAATCAATTTATGGGATCAAAGCCTAAAGCCATGT +GTAAAATTAACCCCACTTTGTGTTACTTTAAATTGCACTGATTATGTAGGGAATAGTGCT +AAAAATGGTACTGATTCGGGGAATAGTACTGTGGCGAATAATGCTACTATTGGGGAAATA +AAAAACTGCTCTTTCAATATCACCACCAGCATAAAAGATAAGGTGCAGAAAGAAAAAGCA +TTGTTTTATAAATATGATTTAGTACAAATAACTGAAGATAAAAATAGTAATACGAGCTAT +AGTAGCTATAGGTTGGTAGGTTGCAACACCTCAGTCATTACACAAGCCTGTCCAAAAATA +TCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGT +AATGATAAAAGGTTCAATGGAAAAGGACCATGTAAAAATGTCAGCACAGTACAATGTACA +CATGGAATAAGACCAGTAGTATCAACTCAACTACTGTTAAATGGCAGCTTAGCAGAGAAA +GAAATAGTAATTAGATCTGAAAATTTCACGAGCAATACTAAAAACATAATAGTACAGTTA +AATGAATCTGTAGAGATTAAGTGTACAAGACCCAACAACAATACAAGAAAAGGTATACAT +TTAGGACCAGGAAAAGCCTTTTATGCAACAACAGACATAATAGGAGATATAAGACAAGCA +CATTGTAACATTAGTGGAACAAAATGGAATAACACATTAAAACAGATAGCTGAAAAATTA +AAAGAACAATATAATAATAATAAAACAATAGTCTTCAATCAATCCTCAGGAGGGGATCCA +GAAATTGTAATGCACAGTTTTATCTGTGGAGGGGAATTTTTCTACTGTAATACAACGCAA +CTGTTTAGGGGTAATGGTACTGGTAATGGTACTGGAGAGTCAAGTGACATTGTCACACTC +CCATGCAGAATAAAACAAATTGTAAACATGTGGCAGAAAGTAGGAAAAGCTATGTATGCC +CCTCCCATCAAAGGACTAATTAGATGTTCATCAAATATTACAGGGCTAATATTAACAAGA +GATGGTAGTAATAAAAGTAAAAGTGATCCAGAGATCTTCAGACCTGCAGGAGGAGATATG +AGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTCAACCATTAGGA +GTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATA +GGAGCTGTGTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATA +ACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTG +CTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAG +CTCCAGGCAAGAGTCATGGCTGTGGAAAGATACCTGCAGGATCAACAGCTCCTGGGAATT +TGGGGTTGCTCTGGAAAGCTCATTTGCACCACTTCTGTGCCTTGGAATGCGAGCTGGAGT +AACAAATCTCTGGAGAAAATTTGGGATAACATGACCTGGATGGAGTGGGAAAAAGAGATT +GACAATTACACAAACGAAATATACACCTTAATTGAAATAGCGCAAAACCAACAAGAAAAG +AATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATA +ACAAACTGGCTGTGGTATGTAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTA +AGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTA +TCGTTTCAGACCCGCCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAA +GAAGGTGGAGAGAGAGACAGAGACAGATTGGGACGATCAGTACCTGGATTCTTAGCAATT +ATCTGGGTCGACCTACGGAGCCTGTGCCTTTTCAGCTACCACCGCTTGAGAGACTTACTC +TGGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATAT +TGGTGGAATCTCCTGCAGTATTGGATTCAGGAACTAAAGAGTAGTGCTACTAGCTTGCTC +AACGCCACAGCCCTAGCAGTAGCCGAGGGAACAGATAGGGTTATAGAAGTAATACAAAGA +ATTGGTAGAGCTTTTCTCCATATACCTAGAAGAATAAGACAGGGCTTCGAAAGGGCTTTG +CAATAAAATGGGTGGCAAGTGGTCAAAATGTAGTATGGTTGGATGGCCTGCTGTAAGGGA +AAGAATAAGACACACTGAGCCAGCAGCAGAGGGGGTGGGAGCAGTATCTCGAGACCTGGA +AAGCCATGGAGCGATCACAAGTAGCAATACAGCTGCTAACAATGATGCTTGTGCCTGGCT +AGAAGCACAAGAGGAGGAGGAAGTGGGTTTTCCAGTCAAACCTCAGGTACCTTTAAGACC +AATGACTTACAAGGCAGCTTTGGATCTAAGCCACTTTTTAAAAGAAAAGGGGGGACTGGA +AGGGTTAATTTACTCCCAGAAGAGACAAGAGATCCTTGATCTGTGGATCTACCACACACA +AGGCTACTTCCCTGACTGGCAGAATTACACACCAGGGCCAGGGATCAGATTTCCACTGAC +CTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATGGAGGAGAGAACGACAGATT +GTTACACCCTGTGAGCCAGCATGGGATGGATGACACGGAGAGAGAAGTGTTGATGTGGAA +GTTTGATAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAA +GAACTGCTGACACCGAGCTTTCTACAAGGGACTTTCCGTTGGGGACTTTCCAGGGAGGGT +GTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGAAGCTGCATATAAGCAGCTGCTT +TTTG +>B.GB.2014.0.14592_1_57.3.MF109551 MF109551 +ATGGGTGCGAGAGCGTCGGTATTAAGCTGGGGAGAATTAGATCGATGGGAAAAAATTCGG +TTAAGGCCAGGGGGAAGGAAAAAGTATAAGTTAAAACATATAGTATGGGCAAGCAGGGAA +CTAGAACGATTTGCAGTTAACCCTGGCCTGTTAGAAACATCAGCAGGCTGTAAACAAATA +ATAAGACAGCTACAATCATCCCTTCAAACAGGATCAGAAGAGCTTAAATCATTGTATAAT +ACAGTAGCAGTCCTTTACTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCT +TTAGACAAGATAGAGGAAGAACAAAGTAAAAGTAAGAAACAGGTACAGCCAGCAGCAGCT +GACACAGGAAGCAGCAGCCAAGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGG +CAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAA +GAAAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACC +CCCGGCGATTTAAACACCATGCTAAACACAATAGGGGGACATCAAGCAGCTATGCAAATG +TTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGACTGCATCCAGTGCAGGCA +GGGCCTGTTGCACCAGGCCAGATAAGAGAACCAAGGGGAAGTGATATAGCAGGAACTACT +AGTACCCTTCAGGAACAAATAACATGGATGACAAGTAATCCACCCATCCCAGTAGGAGAA +ATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACC +AGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGATTATGTAGATCGGTTC +TATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAAGTAAAAAATTGGATGACAGAAACC +TTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGGA +GCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGGGGACCCAGCCATAAGGCA +AGAGTTTTGGCAGAAGCAATGAGCCAGGTAACAAATCCAGCCACCATAATGATGCAGAGA +GGCAATCCTAGAAACCAAAGAAAGACTATTAAATGCTTCAATTGTGGCAAAGAAGGGCAC +ACAGCCAGAAATTGCAAGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA +CACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCC +CACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCGATCAGCCCCACCAGAG +GAGAGCTTCAGGTTTGGGGAAGAGGCAGCAGCTCCCTCTCAGAGGCAGGAACCGATAGAC +AAGGAACTGTATCCTTTAGCCTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAA +TAAAGGTAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTAT +TAGAAGAAATAGATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTT +TTATCAAAGTAAGACAGTATGATCAAGTACCCATAGAAATTTGTGGACATAAAGCAATAG +GTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGC +TTGGTTGCACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGC +CAGGAATGGATGGCCCAAAAGTTAAGCAATGGCCATTGACAGAAGAAAAAATAAAAGCAT +TAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAA +ATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACGGTACTAAATGGAGGAAAT +TAGTAGATTTCAGAGAACTTAACAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAA +TACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATG +CATATTTTTCAGTTCCTTTAGATAAAGAATTCAGAAAGTACACTGCATTTACCATACCTA +GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTGCCACAAGGATGGA +AAGGATCACCAGCAATATTTCAAAGTAGCATGACAAAAATCTTAGAGCCTTTCAGAAAAC +AAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAG +AAATAGGGCAGCATAGAGCAAAAATAGAGGAACTGAGAGAACATCTGTTGAAGTGGGGGT +TTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAAC +TCCATCCTGATAAATGGACAGTACAGCCTATAACACTGCCAGAAAAGGACAGCTGGACTG +TCAATGACATACAGAAGTTAGTAGGAAAACTGAATTGGGCAAGTCAAATTTATGCAGGGA +TTAAAGTAAAGCAATTATGTAAGCTTCTTAGGGGAGCCAGAGCACTAACAGAAGTAGTAC +AACTAACAGAAGAAGCAGAACTAGAATTAGCAGAAAACAGGGAGATTCTAAGAGAACCAG +TACATGGGGTGTATTATGACCCAACAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGAC +AAGGTCAATGGTCATACCAAATTTATCAAGAGCCACATAAAAATCTGAAAACAGGAAAGT +ATGCAAGAACTAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAA +AAATAGCTACAGAGAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTGCCCATAC +AAAAGGAAACATGGGAAGCATGGTGGACGGAGTATTGGCAAGCCACCTGGATTCCTGAAT +GGGAGTTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAAAAAGAACCCA +TAGCAGGAGCAGAAACTTTCTATGTAGATGGAGCATCTAATAGGGAAACTAGAGTAGGAA +AAGCAGGATATGTTACTAACAAAGGAAGACAAAAGGTTGTCACCCTAAATGACACAACAA +ATCAGAAAACTGAGTTACAGGCAATTCAGCTAGCTTTGCAGGATTCAGGATCAGAAGTAA +ATATAGTGACAGACTCACAATATGCAATGGGAATCATTCAAGCACAACCAGATAGGAGTG +AATCAGAGATAGTCAATCAAATAATAGAGCAGCTAATAATGAAGGAAAGGGTCTATCTGG +CATGGGTACCAGCACATAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTG +CTGGAATCAGGAAAGTGCTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGA +AATATCATAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCTA +AAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAG +TAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATCC +TGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAG +GACAGGAAACAGCTTACTTCCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATCC +ATACAGACAATGGCAGCAATTTCACCAGTACTACAGTTAAAGCCGCCTGTTGGTGGGCAG +GGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTA +TGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGA +CAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGT +ACAGTGCAGGAGAAAGAATAGTAGACATAATAGCATCAGACTTACAGACTAAAGAACTAC +AGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAC +TTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATA +ATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAAC +AGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGCACAGT +ATAGTAAAACACCACATGTATATATCAAAGAAAGCTAAGAAATGGGTTTATAGACATCAC +TATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGA +TTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAG +GGGGTCTCCATAGAATGGAGGGAAAAGAGCTATAGCACACAAGTAGACCCTAACCTAGCA +GATCAACTAATTCACCTGTACTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAAAGCA +ATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGA +TCTCTACAATACTTGGCACTAACAGCATTAGTAACACCAAAAAGGGGAAAGCCACCTCTG +CCCAGTGTTACTAAATTAACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCAC +AGAGGGAACCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTG +TTAGACATTTTCCTAGGACGTGGCTTCATGGTTTAGGACAATATATCTATGCAACCTATG +GGGATACTTGGGCAGGAGTAGAAGCCCTAATAAGAATTCTGCAACAGCTGCTGTTTATTC +ATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTACGCAAAGGAGAACAAGAAATG +GAGCCCGTAGATCCTAGACTAGAGCCTTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCT +TGTAACAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAA +GGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAGACAACGACGAAGAACTCCTCAAAAC +AGTGAGACTCATCAAGTTTCTCTACCAAAGCAGTAAGTAGTGCATGTGATGNCTTTAATA +ATAGGATCAATAGTAGCATTAGTAATAGCACTAATAATAGCAATAGTTGTGTGGACCATA +GTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGATAATTGATAGA +ATAATAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGAAGGGGACCAGGAAGAATTGTCA +GCGCTTGTGGAGATGGGGCACCATGCTCCTTGGGATGTTAATGATCTGTAGTGCTGCAGA +CCAATTGTGGGTTACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTTT +ATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACA +TGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTATTGGAAAATGTGACAGAAAA +TTTTAACATGTGGAAAAATAACATGGTAAAACAAATGCATGAGGATATAATCAGTTTATG +GGATCAAAGTCTAAAACCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCAA +TGATTCTACTAACAAAACTAGCAGTAAGGGAGAAATAAAAAACTGCTCTTTTAATGTCAC +CACAAGCATAAGAGATAAGGTAAAGCAAGAATATGCACTGTTTTATAAAGTTGATATAGT +ACCAATNTATAGGTTGATAAATTGTAATACCTCAGTCATTACACAGTCCTGTCCAAAAGT +AACCTTTGAACCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTG +TAATGAAAAGAAGTTCAATGGATCAGGTCCATGTAAAAATGTCAGTACAGTACAATGTAC +ACATGGAATTAGGCCAGTAGTGTCAACTCAACTGCTGCTAAATGGCAGTCTAGCAGAAGA +TGAGGTAGTGATTAGATCTAGCAATTTCTCGGACAATACTAAAAACATAATAGTACAGCT +AAATGAAACTGTACAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACC +TATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAGTAGGAGATATAAGAAAAGC +ACATTGCATCATTAATGGAAGTGATTGGAGAAAAACTTTAGAAAAGGTAGTTGAAAAATT +AAGAGACCAATTTAACAAAACAATAACCTTTAGTCAACCATCAGGAGGGGATCCAGAAAT +TATAATGCACACTTTTAATTGTGGAGGGGAATTTTTCTACTGTGATACAACAAAACTGTT +TAATTCACACTCCCATGTAGAATAAAGCAAATTATAAACATGTGGCAAGAAGTGGGAAAA +GCTATGTATGCCCCTCCTATCCCAGGAATAATTAACTGTTTATCAAATATTACGGGGCTA +ATATTAACAAGAGATGGAGGNGAGATTTTCAGACCTGGAGGAGGAGATATGAGGGACAAT +TGGAGAAGTGAATTATATAAATATAAAGTAGTAGAAATTAAACCATTAGGAGTAGCACCC +ACCAAGGCAAAGAGAAGAGTGGTGCGGAGAGAAAAAAGAGCAGTGGGAATAGGAGCGATG +TTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACG +GTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCT +ATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATTAAGCAGCTCCAGGCA +AGAATCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTAGGGCTTTGGGGTTGC +TCTGGAAAACTCATTTGCCCCACTACTGTGCCTTGGAATACTAGTTGGAGCAATAAATCT +CTGAATAAGATTTGGAATAACATGACCTGGATGCAGTGGGAAAGAGAAATTGACAATTAT +ACAGGCCTAATATACACCTTAATTGAACAATCGCAGAACCAGCAAGAAATAAATGAACAA +GAATTATTGGAATTGGATAAGTGGGCAAATTTGTGGAATTGGTTTGACATAACAAACTGG +CTGTGGTATATAAAGATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTT +TTTGCTGTGCTTTCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTGTCATTGCAG +ACCCTCCTCCCAACCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGA +GAGAGAGGCAGAGATTCGTCCGTGAGATTAGTGAACGGATTCTTAGCGATTTTCTGGGAC +GACCTGCGGAACCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTA +GCGAGGATTCTGGGACTTCTGGGACGCAGGGGGTGGGAAGCTCTCAAATATTGGTGGAAT +CTCCTGCAGTATTGGAGTCAGGAATTAAAGAATAGTGCTGTTAGCTTGCTTAACGCCACA +GCTATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTAGTGCTAAGAGTTTATAGA +GCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGAGTTTTGCTATAAAAT +GGGTGGCAAGTGGTCAAAACTGGCTGGGTGGGCTACTGTAAGGGAAAGAATGAGAAGACA +ACAACAGAGAGGGTGGAAGCAGTATCTCGAGACCTGGAAAAACAAGGAGCAAGCGCTAGT +AGCAATACAGCAACTAATAATGCTGCTTGTGCCTGGCCAGAAGCACAAGAGGATGAAGTG +GGTTTTCCAGTCAGACCTCAGGTTCCTTTAAGACCAATGACTTACAAGGCAGCTCTAGAT +CTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCACAAAGAAGA +CAAGAGATCCTTGATCTGTGGATCTACCACACACAAGGCTACCTCCCTGATTGGCAGAAC +TACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTA +CCAATGGATCCAGAGCAAATAGAAGAGGCCAGCAAAGGAGAGAACAACTGCTTGCTACAG +GAGATGGATGACACAGAGAAAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCGTTC +CATCACATGGCCCGAGAGCTGCATCCGGAGTTTTACAACTGCTGA +>A1.RW.1993.0.93RW_024.AY713406 AY713406 +GCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGG +CCAGGGGGAAAGAAAAAATATAGAATGAAACATCTAGTGTGGGCAAGCAGGGAGCTGGAA +AGATTTGCACTTAACCCTAGCCTTTTAGAATCAACAGAAGGATGTCAACAAATAATAGAA +CAGTTACAACCAGCTCTTAAGACAGGAACAGAAGAAATTAAATCATTATATAATACAGTA +GCAACCCTCTACTGCGTACATCGAAGGATAGATGTAAAAGACACCAAGGAAGCTCTAGAT +AAAGTAGAGGAGATACAAAATAAGAGCAAGCAAAAGACTCAACAGGCAGCAGCTGACACA +GGAAACAGCAGCAGGAGCGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAA +ATGGTACACCAGCCCTTATCACCTAGGACTTTGAATGCATGGGTCAAAGTAATAGAAGAA +AAGGCTTTCAGCCCAGAAGTAATACCCATGTTCTCAGCACTATCAGAAGGAGCCACCCCA +CAAGATTTAAATATGATGCTGAATGTAGTGGGGGGACACCAGGCAGCTATGCAAATGTTA +AAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGTTACATCCAGTACATGCAGGG +CCTATTCCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGT +ACCCCTCAAGAACAAATAGGATGGATGACAGGCAATCCACCTATCCCAGTGGGAGACATC +TATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTTAGC +ATTTTGGATATAAAACAAGGGCCAAAAGAACCCTTCAGGGATTATGTAGATAGATTTTTT +AAAACACTCAGAGCTGAGCAAGCTACACAGGAGGTAAAAGGTTGGATGACAGAAACATTA +CTGGTCCAAAATGCAAATCCAGATTGTAAGTCCATTTTAAGAGCATTAGGACCAGGGGCT +TCATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGG +GTTTTAGCTGAGGCAATGAGTCAAGCACAACAGACAAACATAATGATGCAGAGAGGCAAT +TTTAGGGGCCAGAAAAAGATTAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCTAGA +AATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGGAAGGAGGGACACCAAATG +AAAGACTGCTCTGAAAGACAAGCTAATTTTTTAGGGAGAATTTGGCCTTCCAGCAAGGGG +AGGCCAGGAAATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGCTCCTT +GGGATGGGGGAAGAGATAGCCCCCCCTCCGAAGCAGGAGCAGAAAGACAGGGAACAGGGC +CCACCTTTAGTTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAATAAAAATAG +GGGGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGACACAGTTTTAGAAGACA +TAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGGGGTTTCATCAAAG +TAAGACAGTATGATCAGATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTAT +TAGTAGGACCTACACCTGTCAACATAATTGGAAGGAATATGTTGACCCAGATTGGTTGTA +CTTTAAATTTCCCAATTAGTCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGG +ATGGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAA +TTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACA +ATACTCCAATATTTGCTATAAAGAAAAAGGACAGCACTAAATGGAGAAAATTAGTAGATT +TCAGAGAGCTCAATAAAAGAACACAAGACTTTTGGGAAGTTCAATTGGGGATACCGCACC +CAGCGGGCCTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGGGACGCATATTTTT +CAGTTCCTTTAGATGAAGACTTTAGAAAATATACTGCATTTACCATACCTAGTACAAACA +ATGAGACACCAGGAATCAGGTATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCAC +CGGCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGATCAAGAAATCCAG +ACATAATTATCTATCAATACATGGATGACTTATATGTAGGATCTGATTTAGAAATAGGGC +AGCATAGAGCAAAAATAGAAGAGTTAAGAGCTCATCTATTGAGCTGGGGATTTACTACAC +CAGACAAAAAGCATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAGCTCCATCCTG +ACAAGTGGACAGTCCAGCCTATAGTGCTGCCAGAGAAGGAAAGCTGGACTGTCAATGATA +TACAGAAATTAGTAGGGAAACTAAATTGGGCAAGTCAAATTTATGCAGGAATTAAAGTAA +AGCAATTGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGAGATAGTAACATTGACTG +AGGAAGCAGAATTAGAATTGGCAGAGAACAGGGAGATTCTAAAAGAACCTGTGCATGGAG +TATATTATGATCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGCAAGACCAAT +GGACATACCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCAAGAA +AAAGGTCTGCACACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAGGTGGTCA +TGGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAGA +CATGGGAAACATGGTGGATGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTG +TCAATACCCCTCCTCTAGTAAAACTATGGTACCAGTTAGAGAAGGACCCCATAGAAGGAG +CAGAGACTTACTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGT +ATGTCACTGACAGAGGAAGACAAAAGGTTATTTCCCTAGCTGAGACAACAAATCAAAAGA +CTGAACTACATGCAATCCATCTAGCCTTGCAGGATTCAGGATCAGAAGTGAACATAGTAA +CAGACTCACAGTATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGGGT +TAGTCAATCAGATAATAGAGAAATTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTAC +CAGCACACAAGGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCCGGAATCA +GGAAGGTGCTGTTTTTAGATGGGATAGATAAAGCTCAAGAAGAACATGAAAGATATCACA +GTAATTGGAGAACAATGGCTAGTGATTTTAATCTGCCACCTGTAGTAGCAAAAGAAATAG +TAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGCA +GTCCAGGGATATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATTCTAGTAGCAG +TCCATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGA +CAGCCTACTTTCTACTAAAATTAGCAGGCAGATGGCCAGTAAAAGTAGTACACACAGACA +ATGGTAGCAATTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCAAATATCCAAC +AGGAATTTGGGATCCCCTACAATCCCCAAAGTCAAGGGGTAGTAGAATCTATGAATAAGG +AATTAAAGAAAATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTAC +AAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAG +GGGAAAGAATAATAGACATAATAGCAACAGATATACAAACTAAAGAATTACAAAAACAAA +TTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAATTTGGAAAG +GACCAGCAAAACTACTTTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGATA +TAAAGGTAGTACCAAGAAGAAAAGTAAAGATCATCAGGGATTATGGAAAACAGATGGCAG +GTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAA +CATCATATGTATGTCTCAAAGAAAACAAAGAATTGGTTTTATAGACATCACTATGAAAGC +AGACATCCAAGAGTAAGCTCAGAAGTACACATCCCACTAGGGGATGCTAGACTAATAGTA +AGAACATATTGGGGTCTGCATACAGGAGAAAAAGACTGGCACTTGGGGCATGGGGTCTCC +ATAGAATGGAGGCTAAAAAGATATAGCACACAAATAGATCCTGACCTGGCAGACCAACTA +ATTCATCTGCATTATTTTGACTGTTTTTCAGAATCTGCCATAAGGAGAGCCATATTAGGA +CAAGTAGTTAGCCCTAGTTGTGAATATCACACAGGACATAACCAGGTAGGATCCCTACAA +TATTTAGCACTGAAAGCATTAGTAACACCAACAAAGACAAGGCCACCTTTGCCTAGTGTT +AGGAAATTAGCAGAGGATAGATGGAACAAGCCCCGGAAGACCAAGGACCACAGAGGGAGC +CATACAATGAATGGATGTTAGAGCTGTTAGAAGATCTTAAGCATGAAGCCGTTAGACATT +TTCCTAGACCATGGCTTCATGGATTAGGACAACATATCTATGAAACCTATGGGGATACTC +AGGAAGGAGTTGAGGCTATAGTAAGAATTCTGCAACAACTACTGTTTGTTCATTTCAGAA +TCGGGTGCCAACATAGCAGAATAGGCATTATTCCAGGGAGAAGAGGCAGGAATGGATCCA +GTAGATCCTAACCTAGAGCCCTGGAACCATCCGGGAAGTCAGCCTACAACTGCTTGTAAC +AAGTGTTACTGTAAAAAGTGTTGCTATCATTGTCCAAGTTGCTTTTTGAACAAAGGCTTA +GGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAGGAACTCCTCAAAGCAGTAAG +GATCATCAAAATCCTATACAAAAGCAGTAAGTAATTAGCATATGTAATGCAGTCTTTGGA +AATCTGTACAATAGTAGGATTCATAGTAGCGCTAATCCTAGCAATAGTTGTGTGGACTAT +AGTAGGAATAGAATATAAGAAAGTGCTAAGACAAAGAAAAATAGACAGGATAATTGAGAG +AATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGATGGGGATACAGAGGAATTATC +AGCACTTGTTAGAATGGGGAACTATGATCTTGGGGATGATAATATTCTGTAGTGCTGTAG +AAAACTTGTGGGTTACTGTCTACTATGGGGTACCGGTGTGGAAAGATGCAGAGACCACCC +TATTTTGTGCCTCAGATGCTAAAGCATATGAGACAGAAGTGCATAATGTCTGGGCTACAC +ATGCCTGTGTGCCCACAGACCCAAACCCACAAGAAATACCTTTGGAAAATGTGACAGAAA +AGTTTAACATGTGGAAAAATTATATGGTAGAGCAGATGCATACAGATATAATCAGCCTAT +GGGATGAAAGCCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGCGTTACTTTAAATTGTA +GCGATGCCATTGGCAACTTTACAAATATCAAGGAAGAAATAACAAACTGCTCTTTCAATG +TGACCACAGAACTAAGGGATAAGACAAAGAAAGTACATTCACTTTTTTATAGACTTGATA +TAGTACCACTTAATGAATATAGTAGTAGCAATAAAAGTAGTAACAATAATAATAGTAGCC +AGGAATATGTATTAATAAATTGTAATACCTCAGCCATTACACAAGCCTGTCCAAAGGTAA +CCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATCCTAAAGTGTA +AGGACACAGATTACAATGGAACAGGGCCATGCAGGAATGTCAGCACAGTACAATGCACAC +ATGGAATCAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGCCTAGCAGAAAGAA +ATGTAACAATTAGATCTGAAAATATCACAAACAATGCCAAAACCATACTAGTACAACTTG +TCAAGCCTGTGAGAATTAATTGTACCAGACCTTATAACAATACATTCAGAAGGGTACGTA +TAGGACCAGGACAATCATTCCATGCATCAGATAACATAGTAGGGGATATAAGAAAAGCAC +ATTGTAATGTTAGTAGATCAGAATGGAATGAAACTTTACAACAGGTAGTTACTCAATTAA +GAGGGTACTTTGGGAACAAGACAATAGTCTTTACTAAGCCCTCAGGAGGGGATCTAGAAA +TCATAACACATAGTTTTAATTGTAGAGGAGAATTTTTCTATTGTAATACATCAAGCCTGT +TTAATAGCACTTGGAATAACACTGCCAGCATGCAGAAGTCAAATAGCACGGGGTCAAATG +ACACTATAACTCTCCAATGCAGAATAAAGCAAATTATAAGAATGTGGCAAAGAACAGGAC +AGGCAATGTATGCCCCTCCCATCAAAGGAGATATAAGGTGTGAATCAAACATTACAGGAC +TAATATTAACAAGAGATGGTGGGAATGATAGCAGTCCAGATGAAATCTTCAGACCTGGAG +GAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAGTACAAATTG +AACCTCTAGGAGTAGCACCCACCAAGGCAAGAAGAAGAGTGGTGCAGAGAGAGAAAAGAG +CAATTGGAATAGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCG +CGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGCATAGTGCAACAGC +AAAGCAATTTGCTGAGGGCTATAGAGGCTCAACAACATCTGTTGAAACTCACGGTCTGGG +GCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGC +TCCTAGGAATTTGGGGTTGCTCTGGGAAACTCATCTGCACCACTAATGTGCCCTGGAATA +CTAGTTGGAGTAAAAATAAATCTCTGAGTGAAATATGGGATAACATGACCTGGCTGCAAT +GGGATAAAGAAATTAGCAATTACACAAACCTAATATATAACCTAATTGAAGAATCGCAGA +ACCAGCAGGAAAAGAATGAACAAGACTTATTAGCATTGGATAAGTGGGCAAATCTTTGGA +CTTGGTTTGACATATCAAATTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAG +GCTTAATAGGATTAAGAATAGTTTTTGCTGTGCTTACTGTAATAAATAGAGTTAGGCAGG +GATACTCACCTTTGTCATTTCAGATCCATACCCCAAACCCAGGGGATCCCGACAGGCCCG +GAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAAACAGATCGATTCGATTAGTAAGCG +GATTCTTAGCGCTTGCCTGGGACGATCTGCGGAGCCTGTGCCTTTTCTGCTACCACCGCT +TGAGGGACTTCACCTTGATTGCAGCGAGGACTGTGGAACTTCTGGGACACAGCAGTCTCA +AGGGGTTGAGACTGGGGTGGGAAGGCCTCAAGTATCTTGGGAATCTCCTGTTGTATTGGG +GTCAGGAACTGAAAAATAGTGCTATTAATTTGTTTGATACCATAGCAATAGCAGTAGCTG +GCTGGACAGATAGGGTTATAGAAGTAGGACAAAGAGTTGGTAGAGCTTTGCTCCACGTAC +CTAGAAGGATCAGACAGGGCTTTGAAAGGGCTTTGCTATAACATGGGTGGCAAGTGGTCA +AAAAGTAAAATGGGCTGGCCTGAGATTAGGGAAAGAATGAGACGCGCTCCTGCTCCTTCA +GCAGCAACAGGAGTAGGAGCAGTATCTCAAGATTTAGCTAGACATGGAGCAGTCACAAGC +AGCAATACCAATCACCCTAGTTGCGTCTGGCTGGAAGCGCAAGAAGAAGAGGAGGAGGTA +GGCTTTCCAGTCAGGCCACAAGTGCCTCTAAGACCAATGACTTACAAGGCAGCTGTGGAT +CTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCAGGAGAAGA +AAAGACATCCTTGATCTGTGGGTCTACCACACACAAGGATTCTTCCCTGATTGGCAAGAA +TACACACCAGGGCCAGGGACCAGATACCCACTAACGTTTGGATGGTGCTTCAAGCTAGTA +CCAGTTGATCCAGATGAAGTAGAGAAGGAGACTGAAGGAGAGAACAACAGCCTATTACAC +CCTATATGCCAACATGGAATGGATGATGAGGAGAAAGAAGTGTTAAAGTGGGTGTTTGAC +AGCCGCCTGGCACTGAAACACAGAGCCCAAGAGCTGCATCCGGAGTTCTACAAAAACTGA +TGACACAGAAGATGCTGACAGGGACTTTCTGCTGGGGACTTTCCAGGGGAGGTGTGGTTT +GGGCGGAGTTGGGGAGTGGCTAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCT +GTACTGGGTCTCTCTTGGTAGACCAGATTGAGCCTGG +>A1.TZ.2005.0.CO0439V5.KX907347 KX907347 +GATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAGAAAATTCG +GTTAAGGCCAGGGGGAAAGAAAAAATATAGAATGAAACACCTAGTATGGGCAAGCAGGGA +GCTGGAAAGATTTGCACTTAATCCTAGCCTTTTAGAAACAACAGAAGGATGTCAACAAAT +CATGGAACAGTTACAACCAGCTCTCAAAACAGGAACAGAAGAACTTAGATCATTATTTAA +TACAGTAGCAACCCTCTATTGTGTACATCAACGGATAGGGGTAAAAGACACCAAGGAAGC +TCTAGATAAAGTAGAGGAAATGCAAAATAAGAGCAGGCAAAAGGCACAACAGGCAGCGGC +TGATACAGGAAACAGCAGCAAAGTCAGCCAAAATTATCCTGTAGTGCAGAATGCACAAGG +GCAAATGACACACCAGTCCTTGTCACCTAGGACTTTGAATGCATGGGTAAAAGTAATAGA +AGAAAAGGCTTTTAGCCCAGAAGTGATACCCATGTTTTCAGCCTTATCAGAAGGAGCCAC +CCCAGGTGATTTAAATATGATGCTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAAT +GTTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGTTACATCCAGTACATGC +AGGGCCTATTCCACCAGGCCAATTGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTAC +TAGTACCCCTCAAGAACAAATAGGGTGGATGACAGGCAACCCACCTATCCCAGTGGGAGA +CATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGT +TAGCATTTTGGATATAAGACAAGGGCCAAAAGAACCCTTCAGAGATTATGTAGACAGGTT +CTTTAAAGTTCTCAGAGCTGAGCAAGCTACACAGGAGGTAAAAAATTGGATGACAGAAAC +ATTGTTGGTCCAAAATGCAAATCCAGACTGTAAGTCCATTTTAAGAGCATTAGGACCAGG +GGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGTCATAAAGC +AAGGGTTTTGGCTGAGGCAATGAGTCAAGTACAAAATACAAACATAATGATGCAAAGGGG +CAATTTTAGGGGCCAGAAAAGGATTAAGTGTTTTAACTGTGGGAAAGAAGGACACCTAGC +CAGAAATTGCAAGGCCCCTAGGAAAAAGGGCTGTTGGAAGTGTGGAAAGGAGGGACACCA +AATGAAAGACTGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAA +GGGAAGGCCAGGAAATTTTCCTCAGAGCAGACCAGAGCCATCAGCCCCACCAGCAGAGAG +CTTCGGGATGGGGGAAGAGATAACCTCCCCTCCGAAGCAGGAACAGAAAGACAGCCCACC +TTTAACTTCCCTCAGATCACTCTTTGGCAACGACCTCTTGTCACAGTAAGGATAGGGGGA +CAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAAT +TTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAA +CAATATGATCAGATACTTATGGAAATTTGTGGAAAAAAGGCTATAGGGACAGTATTAGTA +GGACCTACACCCGTCAACATAATTGGAAGAAACATGTTGACCCAGATTGGTTGCACTTTA +AATTTCCCAATTAGTCCTATTGAGACTGTACCAGTAAAGTTAAAGCCAGGAATGGATGGC +CCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAGGCATTGACAGAAATTTGT +ACAGAAATGGAAAAGGAAGGAAAAATTTCAAAGATTGGGCCTGAAAATCCATACAATACT +CCAATATTTGCAATAAAGAAAAAAGACAGCACAAAATGGAGAAAGTTAGTAGATTTCAGG +GAGCTCAATAAAAGAACACAAGACTTTTGGGAAGTTCAATTAGGAATACCGCATCCAGCG +GGCCTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTT +CCTTTAGATGAAGAGTTTAGGAAGTATACTGCTTTCACCATACCTAGTACAAACAATGAG +ACACCAGGAATCAGGTATCAATACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCA +ATATTCCAGAGTAGCATGACAAAAATTTTAGAACCCTTTAGAGCAAAAAATCCAGAAATA +ATTATCTATCAATACATGGATGACTTGTATGTGGGATCTGATTTGGAAATAGGACAGCAC +AGGACAAAAATAGAAGAATTGAGAGCTCATCTATTGAGCTGGGGGTTTACTACACCAGAC +AAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAGCTCCATCCTGACAAG +TGGACAGTCCAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGATATACAG +AAACTAGTGGGGAAACTAAATTGGGCAAGTCAAATTTATGCAGGGATTAAAGTAAAGCAA +TTGTGTAGACTCCTCAGGGGAGCCAAGGCACTAACAGAGACAGTAACATTGACTGAAGAA +GCAGAATTAGAATTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATAC +TATGACCCATCAAAAGACTTAGTAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACA +TACCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCAAGAAAAAGG +TCTGCTCACACTAATGATGTAAAACAGTTAGCAGAAGTGGTACAAAAGGTGGTCATGGAG +AGCATAGTAATATGGGGAAAGAGTCCTAAATTTAAATTACCCATACAAAAGGAGACATGG +GAAACATGGTGGATGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTTAAT +ACCCCTCCTCTAGTAAAATTATGGTACCAATTAGAGAAAGACCCCATAATAGGAGCAGAG +ACTTTCTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTC +ACTGACAGAGGAAGACAAAAGATTGTTTCCCTAATTGAGACAACAAATCAAAAGACTGAA +CTACATGCAATCTATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAACATAGTAACAGAC +TCACAGTATGCCTTAGGAATCATTCAGGCACAGCCAGACAGGAGTGAATCAGAGCTAGTC +AGTCAAATAATAGAGAAGTTAATAGAAAAGGACAAAGTCTATCTGTCATGGGTGCCAGCA +CACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCCGGAATCAGGAAG +GTGCTGTTTTTAGATGGGATAGATAAAGCTCAAGAAGACCATGAAAGATATCACAGCAAT +TGGAGAGCAATGGCTAGTGATTTTAATCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCT +AGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGCAGTCCA +GGGATATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATTCTAGTAGCAGTTCAT +GTAGCCAGTGGCTATATAGAGGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACCGCA +TACTTTATACTAAAATTAGCAGCAAGATGGCCAGTAAAAATAATACACACAGACAATGGC +AGCAATTTCACTAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCAGATATCCAACAGGAA +TTTGGGATTCCCTACAACCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGGAATTA +AAGAAAATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTACAAATG +GCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAA +AGAATGATAGACATGATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACA +AAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCA +GCAAAACTACTTTGGAAAGGTGAAGGGGCAGTAGTGATACAGGATAATAGTGATATAAAG +GTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGAT +GATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAATAGTTTAGTAAAACATCA +TATGTATATCTCAAAGAAAGCTAGGAATTGGTTTTATAGACATCACTTTGAAAGCAGGCA +TCCAAGAGTAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAGATTAGTAGTAAAGAC +CTATTGGGGTCTACATCCAGGAGAAAAGGACTGGCAATTGGGTAATGGGGTATCCATAGA +ATGGAGGCTAAAAAGATATAACACACAAATAGATCCTGAGCTGGCAGACCAACTAATTCA +TCTGCATTATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAAGCCATATTAGGACAAGT +AGTTAGCCCTATATGTGAATATCAAGCAGGACATAGCAAGGTAGGATCTCTACAATATTT +AGCACTGAAAGCATTAGTAACCCCAACAAAGACAAAGCCACCTTTGCCTAGTGTTAGGAT +ACTAGCGGAGGATAGATGGAACAAGCCCCGCAAGACCAGGGGCCCCAGAGGGAACCCTAC +AATGAATGGATGTTAGATCTGTTAGAAGAGCTTAAGCATGAAGCCGTTAGACATTTTCCT +AGACCATGGCTTCATGGATTAGGACAACATATCTATAACACCTATGGGGATACTTGGGAA +GGAGTTGAAGCTATAGTGAGAATGCTGCAACAATTACTGTTTGTTCATTTCAGAATTGGG +TGCCAACATAGCAGAATAGGCATTATTCGGGGGAGAAGAGGCAGGAATGGACCCGGTAGA +TCCTAACCTAGAGCCTTGGAACCACCCAGGAAGTCAGCCTGCAACTCCTTGTAGCTCGTG +TTACTGTAAAGTGTGTTGCTATCATTGCCCAGTTTGCTTTTTGAACAAAGGCTTAGGCAT +CTCCTATGGCAGGAAGAAGCGGAAGCAGCGACGACGAACTCCTCAAAGCGATAAGGATCA +TCAAAATCCTATACAAAAGCAGTAAGTATATGTAATGTGGGACTCTTTGTCTATCTGTGC +AGTAGTAGGACTGATAGTAGCGCTAATCCTAGCAATAGTTGTGTGGACCATAGTAGGTAT +AGAATATAAGAAATTGCTAAAACAAAGAAAAATAGACAAGTTAATTGAAAGAATAAGAGA +AAGAGCAGAAGACAGTGGCAATGAGAGTGATGGGGATACAGAGGAATTGTCAACACTTAT +TGAGATGGGGAACCTTGATTTTGGGGTTGATAATAATCTGTAGTACTGCAGACAAGTTGT +GGGTTACTGTATACTATGGGGTACCTGTGTGGAAAGATGCAGAGACCACCTTATTCTGTG +CATCAGACGCTAAAGCATATGACAAAGAAAAGCATAATGTCTGGGCTACGCATGCCTGTG +TACCCACAGACCCTAACCCACAAGAAATACATTTGGAAAATGTGACAGAAGAGTTTAACA +TGTGGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATCAGTCTATGGGATCAAA +GCCTTAAGCCATGTGTAAAGCTAACCCCTCTCTGCGTTACTCTAAATTGTAGCCACAACA +TTACTAGGCTCAACACCAGTAGTCCCAACATCACAGGAAACGACACAAACAGTAGTCCCA +ACATCACAGAAAACGACACAGAAAACGAAAGGAAAAACTGCTCTTTCAATATAACCACAG +AATTAAGGGATAAGAGCAAACAAGTATATTCACTTTTTTATAGACTTGATATAGTACCAA +TTGATGGTAGTGACAATAGCAGTGACAATAGCAATAATTATAGATTAATAAATTGTAATA +CCTCAGCCATTACACAGGCTTGCCCAAAAGTGTCCTTTGAGCCAATTCCCATACATTATT +GTGCCCCAGCTGGTTTTGCGATTCTAAAATGTAAGGATGGAAATTTCAGTGGAAAAGGGC +CATGCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGTAGTATCAACTC +AACTGCTGTTAAATGGCAGTCTAGCAGAAGAAAAGGTAAAAATTAGATCTGAAAATATCA +GTGACAATACCAAAAACATAATAGTACAACTTGTCCAACCTGTGAAGATTAACTGTACCA +GACCTGACAACAACACAAGAAAGAGTATACATATAGGACCAGGACAAGCATTCTTTGCAA +CAGGTGCCATAATAGGGAAGATAAGACAAGCACATTGTAATGTCAGTAAAACAGAATGGA +ATAAAGCTTTAAAACAGGTAGTTGAACAATTAAGAAGAGACTTTGGAAACAAAACAATAA +TATTCAAAAACTCCTCAGGAGGAGATCTAGAAATCACAACACATAGTTTCAATTGTGGAG +GAGAATTTTTCTATTGTAATACATCAGGCCTGTTTAATAGCACTTGGCTGTCTAATAGTA +CTAACAGCACGGATAACACGGGGACAAATGACACTATAACTCTCCAATGCAGAATAAAGC +AAATTATAAATATGTGGCAAAGAGTAGGACAAGCAATGTATGCCCCTCCCATCCCAGGAG +TAATAAGGTGTGAATCAAACATTACAGGACTAATGTTAACAAGAGATGGTGGGAATAATG +CTACCAATGAAACCTTTAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAAT +TATATAAGTATAAAGTAGTAAAAATTGAACCACTAGGAGTAGCACCCACCAAGGCAAAGA +GAAGAGTGGTGGAGAGAGAAAAAAGAGCAGTTGGAATAGGAGCTGTCTTCCTTGGGTTCT +TAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGAC +AATTATTGTCTGGCATAGTGCAACAGCAAGGCAACTTGCTGAGGGCTATAGAGGCTCAAC +AACATCTGTTGAAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCGAGAGTCCTGGCTG +TGGAAAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCA +TCTGCACCACTACTGTGCCCTGGAACTCTAGCTGGAGCAATAAATCTTACGATGATATAT +GGGAGAACATGACCTGGCAGCAATGGGAGCGGGAAATTAGCAATTACACAGATATAATAT +ACAGATTGATTGAAGACTCGCAGAACCAGCAGGAAATGAATGAAAAAGACTTATTGGCAT +TAGACAAGTGGGCAAGTCTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAA +AAATATTTATAATGATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTGCTGTGCTTG +CTATAATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCGTTCCAGACCCATACCCCAA +GCCCAAGGGATCTCGACAGGCCCGGAAGAATCGAAGAAGAAGATGGAGAGCAAGACAGAA +CCAGATCGATTCGCTTAGTGAGCGGATTCTTAGCGCTTGCCTGGGACGATCTGCGGAGCC +TGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTCATCTTAATTGCCACGAGGACTGTGG +AACTTCTGGGACACAGCAGTCTCAAGGGGCTGAGACTGGGGTGGGAAGGCCTCAAGTATC +TGTGGAATCTCCTGTTATATTGGGGACGGGAACTAAAGAATAGTGCTATTAATTTGGTTG +ATACCATAGCAATAGTAGTAGCTGGCTGGACAGATAGGGTTGTAGAAATAGGACAAAGAT +TTGGTAGGGCTATCCTCTACATACCTAGAAGAATAAGACAGGGCTTAGAAGGGGCTTTGC +TATAACATGGGTGGCAAGTGGTCAAAAAGCAGCAGAGTGGGATGGGCTGAGATTAGAGAA +AGAATGAGACGTACTCCTGCAGCAGCACCAGGAGTAGGAGCAGTATCTCAAGATTTAGAT +AAGCATGGAGCAATCACAAGTACTAATGTAAATCACCCTAGTTGTGCCTGGCTGGAAGCG +CAGGAAGAGGATGAGGAGGTAGGCTTTCCGGTCAGGCCACAAGTACCTCTGAGACCCATG +ACTTACAAGGCAGCTGTTGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGG +TTAATTTACTCCAAGAAAAGACAAGACATCCTTGATCTGTGGGTCTACCACACACAAGGC +TTCTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGGAAAGATTCCCACTAACATTT +GGATGGTGCTTCAAACTAGTACCAGTTGATCCAGATGAAGTAGAGAAGGCCAATGAGGGG +GAGAACAACTGTCTATTACACCCGATATGCCAACATGGAATGGATGATGATGACAGAGAA +GTGTTAAAGTGGAAGTTTGACAGTCGCCTGGCACTAAAACACAGAGCCCGAGAGCTGCAT +CCGGACTTCTACAAAGACTGCTGACACAGAGATTGCTGACAGGGACTTTCCGCTGGGGAC +TTTCCAGGGGAGGTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAA +>A1.TZ.2012.0.30924v01_01.MN791964 MN791964 +ATGGGTGCGAGAGCGTCAATATTAAAGGGGGGAAAATTAGATGCTTTGGAGAAAATTCGA +TTAAGGCCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAATATGGGCAAGCAGGGAG +CTGGAAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAGCAAATA +ATAGGACAGTTACAATCAGCTCTCAGGACAGGGACAGAAGAATTGAGATCATTATATAAT +ACAGTAGTAACCCTTTACTGTGTACATCAAGGGATAGATGTAAAAGACACTAAGGAAGCT +CTAGATAAAATAGAAGAAATACAAACTAAGAGCAAGCAACAGACACAGCAGGCAGCAGCC +GCAGGAAGCAGCAGCCAGGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAA +ATGATGCACCAGAACTTGTCACCTAGGACTTTAAATGCATGGGTGAAAGTAATAGAAGAA +AAGGGTTTTAGCCCAGAAGTGATACCCATGTTCACAGCATTATCAGAAGGAGCTACCCCA +CAAGATTTAAATGTGATGCTAAACATAGTGGGGGGACACCAGGCAGCTATGCAGATGTTA +AAAGACACCATCAATGAAGAAGCTGCAGAATGGGACAGGTTACATCCAGTACAGGCAGGG +CCTATTCAACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGC +ACCCCTCAAGAACAAATACAATGGATGACGAACAACCCACCTATCCCAGTGGGAAACATT +TATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAAAATGTATAGCCCTGTTAGC +ATTCTGGATATAAAACAAGGGCCAAAAGAACCCTTCAGGGACTATGTAGATAGGTTCTTT +AAAACTCTCAGAGCTGAGCAGGCTACACAGGAGGTAAAAGGATGGATGACAGAAACATTA +CTGGTCCAAAATGCAAATCCAGATTGTAAGTCCATTTTAAGAGCATTAGGAGCAGGGGCT +ACATTAGAAGAGATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCACAAAGCAAGG +GTTCTGGCTGAGGCAATGAGTCAAGTACAACAGCCAAATATAATGTGGCAGAGAGGCAAT +TTTAAGGGACAGAAAAAGATTAAGTGTTTTAACTGTGGCAAAGAGGGACATCTAGCCAGA +AATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAGGGACACCGAATG +AAAGATTGCACAGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCGGCAAGGGG +AGGCCAGGGAATTTTCCTCAGAACAGACTGGAGCCAACAGCCCCACCAGCAGAGCTCTTT +GGGATGGGGGAAGAGATGACCTCCCCTCAGAAGCAGGAGCAGAGAGACAAGGAATCGACC +CCACCTTCAGTTTCCCTCAAATCACTCTTTGGCAACGACCTCTTGTCACAGTAAAAATAG +GGGGACAGCTAAAAGAGGCTCTATTGGATACAGGAGCAGATGATACAGTATTAGAAGACA +TAAATTTGCCAGGAAAATGGAGACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAG +TAAAACAGTATGATCAAATATCTATAGAAATTTGTGGGAAAAAGGTTATAGGTACAGTAT +TAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACCCAGCTTGGTTGTA +CTTTAAATTTCCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGG +ATGGCCCAAGGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAA +TTTGTACAGAGATGGAGAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACA +ATACTCCAATCTTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGGAAATTAGTAGATT +TTAGAGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTGGGAATACCGCATC +CAGCGGGCCTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTCT +CAGTCCCTTTATATGAAGACTTCAGAAAATATACTGCGTTCACCATACCTAGTACAAATA +ATGAGACACCAGGAGTTAGGTATCAGTATAATGTGCTTCCACAGGGATGGAAAGGATCAC +CAGCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGATCAAAAAATCCAG +AAATAATTATCTATCAATACATGGATGACTTGTATGTAGGATCTGATTTAGAAATAGGGC +AGCATAGAACAAAAATAGAAGAGTTAAGAGCTCATCTGTTGAGCTGGGGATTTACTACCC +CAGACAAAAAGCATCAGAAAGAACCACCATTTCTTTGGATGGGATATGAACTCCATCCTG +ACAAATGGACAGTCCAGCCTATAGAGTTGCCAGAAAAAGAAAGCTGGACTGTCAATGATA +TACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAA +AGCAGTTGTGTAAGCTCCTCAGAGGAGCCAAAGCACTAACAGATATAGTAACAATGACTG +AGGAGGCAGAATTAGAGTTGGCAGAAAACAGGGAGATTCTAAAAGACCCTGTGCATGGGG +CATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAGGGGCAGGACCAAT +GGACATATCAAATTTATCAGGAGCCATTTAAAAATCTAAAGACAGGAAAATATGCAAGAA +AAAGGTCTGCTCACACTAATGATGTAAAACAATTATCAGAAGTGGTGCAAAAGGTGGTCA +TGGAAAGCATAGTAATATGGGGAAAGACTCCCAAATTTAAATTACCCATACAAAAAGAAA +CATGGGAAACATGGTGGATGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTG +TCAATACCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGTAGGAG +CAGAGACTTTCTATGTAGATGGGGCAGCTAATAGGGAGACTAAGCTAGGAAAAGCAGGGT +ATGTCACTGACAGAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACAAATCAAAAGA +CTGAACTACATGCAATCCATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAATATAGTAA +CAGACTCACAATATGCATTAGGGATCATTCAGGCACAACCAGACAAAAGTGAATCAGAGT +TAGTCAATCAAATAATAGAGAAGCTGATAGGAAAGGACAAAGTCTACCTGTCATGGGTAC +CAGCACACAAAGGAATTGGAGGGAATGAACAGGTAGATAAATTAGTCAGCTCTGGAATCA +GAAAGGTGCTGTTTTTAGATGGGATAGATAAGGCCCAAGAAGACCATGAAAGGTATCACA +GCAATTGGAGAGCAATGGCTAGCGATTTTAATCTGCCACCTATAGTAGCAAAAGAAATAG +TAGCCAGCTGTGATAAATGTCAACTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTA +GTCCAGGGATGTGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATCTTGGTAGCAG +TCCATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGA +CAGCATACTTTCTGCTAAAATTAGCAGGTAGATGGCCAGTAAAAGTAGTACACACTGACA +ATGGTAGCAATTTCACCAGCGCTGCATTTAAAGCAGCCTGTTGGTGGGCAAATGTTCAAC +AAGAATATGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGG +AATTAAAGAAAATCATAGGGCAGGTGAGAGAGCAAGCTGAACACCTTAAGACGGCAGTAC +AAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACACTGCAG +GGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAAAATA +TTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAATTTGGAAAG +GACCAGCCAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGAGA +TAAAGGTAGTACCAAGAAGAAAAGCAAAAATCCTTAGGCATTATGGAAAACAGATGGCAG +GTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTATAGTAAAA +CATCATATATATAGCTCAAGGAGAGCTACAGGATGGTTTTATAGACATCACTTCGAAACA +AGGCATCCAAAAGTAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAGATTAGTAGTA +AAAACATATTGGGGTCTGCAACCAGGAGAACAAGATTGGCAGTTGGGTCATGGGGTCTCC +ATAGAATGGAGGCTAAGAAAGTATAGCACACAAATAGATCCTGACATGGCAGACCAACTA +ATTCATCTGCATTATTTTAATTGTTTTTCAGACTCTGCCATAAGGAAAGCCTTATTAGGA +CAAGTAGTTAGCCCTAGTTGTGACTATCAAGCAGGACATAACAAGGTAGGATCTCTACAA +TATTTGGCACTGAAAGCATTAGTAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTT +AAGAAGCTAACAGAGGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGC +CATTCAATGAATGGACATTAGAACTGTTAGAAGAGCTAAAGCATGAAGCTGTTAGACATT +TTCCTAGGCCATGGCTTCATGGGTTAGGACAATATATCTATGAGACCTATGGGGATACTT +GGGAAGGAGTTCAAGCTATAATAAGAATTTTGCAACAATTGCTGTTTATCCATTTCAGAA +TTGGGTGCCAACATAGCAGAATAGGCATTATTCCAGGGAGAAGAGGCAGGAATGGATCCA +GTAGATCCTAACCTAGAGCCCTGGAATCATCCGGGAAGTCAGCCTACAACTGCTTGTAGC +AAATGTTACTGCAAAGTGTGTTGCTATCATTGCCAAGTTTGCTTTCTGAACAAAGGCTTA +GGCATCTCCTATGGCAGGAAGAAGCGGAAACAGCGACGAGGACCTCCTCGCAGCAATAAA +GGTCATCAAAATCCTATACCAGAGCAGTAAGTAACAATAGTTAATATATGTAATGACTCT +TTTAGAAATCTGTGCAATAGTAGGACTGGTAGTAGCTTTTATCTTAGCAGTAGTTGTGTG +GGCTATAATAGGTATAGAATATAAGAAAATACTAAGGCAAAGAAAAATAGATAGGTTAAG +TGACAGAATAAGAGACAGAGCAGAAGAYAGTGGCAATGAAAGTGAGGGGGATACAGATGA +ACTCGCAGCACTTATTGAAATGGGGGGCTATGATCTTGGGAACGTTAATGATCTGTAGTG +CTGCAGATAAATTGTGGGTTACTGTCTATTATGGGGTGCCTGTGTGGAAGGATGCAGAGA +CCACCCTATTTTGTGCATCAGATGCTAAAGCATATAAGACAGAAAAGCATAATGTCTGGG +CTACGCATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATACATTTGGAAAATGTGA +CAGAAGAGTTTAACATGTGGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATCA +GTTTATGGGACCAAAGTTTAAAGCCATGTGTAAAGTTAACCCCTCTTTGTGTGACTTTAA +ATTGTAGCAACAACGTTACCATTACCAACAGCACTAATGAAGTAAGAAACTGCTCTTTCA +ATGTGACCACAGCAGTACAGGATAAGAAAGATAAAGTATGGTCACTTTTTTATAATCTTG +ATGTAGTACAAATAGGTAGTGAGAATAGTAGTCAATATAGATTAATAAATTGTAATACCT +CAGTCATTACACAGGCATGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTG +CTCCAGCTGGTTTTGCGATTCTAAAGTGTAATGATGAGAAGTTCACTGGAACAGGGTCAT +GCGATAATGTCAGCACAGTACAATGCACACATGGGATCAGGCCAGTAGTGTCAACTCAAC +TGCTGTTAAATGGCAGTCTAGCAGGAGACAAGGTAATGATTAGAACTGAAAATATCACAA +ACAATGCCAAAAACATAATAGTACAATTGAACAAGTCTGTAAAAATTAATTGTACCAGAC +CTGCCAACAATACAAGAAAAAGTATAACTATGGGACCAGGAAAGGCCTTCTTTGCAACAG +GTGGCATAATAGGGGATATAAGACAAGCACATTGTAATGTCAGTAAAACAGACTGGACTG +CAGCTTTGCACGATGTAAGCCAACAATTAAGAACATTCTTTGAGAATGAAACAACAATAA +TCTTTGCTAGCGCCTCAGGAGGGGATCTAGAAATTACAACACATAGTTTTAATTGTGGAG +GAGAATTTTTCTATTGTAACACATCAAGCCTGTTTAATAGCACCTTCAGGTCAAATAGCA +GCATAAGGGACATGGAGTTAAACGACACTATAACTCTCCAATGCAGAATAAAGCAAATTA +TAAACATGTGGCAGAGAACAGGACAAGCAATGTATGCCCCTCCCATCCCAGGAATAATAA +GGTGTGAATCCAACATTACAGGATTAATATTAACAAGAGATGGTGGGGGAGGGAATAGGA +GTAATGAAACCTTCAGACCTGTAGGAGGAGATATGAGGGATAATTGGAGAAGTGAATTAT +ATAAATATAAAGTAGTAAAAATTGAACCACTAGGAGTAGCACCCACCAGGGCGAAGAGAA +GAGTGGTGGGGAGAGAAAAAAGAGCAGTCGGACTGGGAGCTGTTTTCATTGGGTTCTTAG +GAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGGCAAT +TATTGTCTGGTATAGTGCAACAGCAAAATACTTTGCTGAGGGCTATAGAGGCTCAACAGC +ATTTGTTGAAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGACTCCTGGCTGTGG +AAAGATACCTAAAGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCATCT +GCACCACTAATGTGCCCTGGAACTCTAGTTGGAGTAATAAATCATATAGTGAGATATGGG +ATAATATGACTTGGATACAATGGGATAAAGAAATTAACAATTACACACAGATAATATATG +AGCTAATAGAAAAATCGCAGAACCAGCAGGAAATAAATGAACAAGACTTATTGGCATTGG +ACAAATGGACAAATTTGTGGAATTGGTTTGACATATCAAATTGGCTGTGGTATATAAAGA +TATTCATAATGATAGTAGGAGGCTTAATAGGGTTAAGAATAGTTTTTGCAGTGCTTTCTG +TAATAAGTAGAGTTAGGCAGGGATACTCACCTTTGTCTTTTCAGACCCATACCCCAAACC +CAACGGGACTCGACAGGCCCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGGCA +GATCCACGCGATTAGTGAACGGATTCTTAGCACTTGTCTGGGACGATCTTCGGAGCCTGT +GCCTCTTCAGCTACCACCAATTGAGGAACTTCATCTTGATTGTCGCGAGGACTGTGGAAC +TTCTGGGACGCAGCAGTCTCAAGGGGTTGAGACTGGGGTGGGAAGGCCTCAAGTATTGGG +GGAATCTCTTGATATATTGGGGTCGGGAGCTAAAAACTAGTGCTATTCATTTGTATGATA +CCATAGCAATAGTAGTAGCTGGCTGGACAGATAGGGTTATAGAACTAGGACAAAGGTTTG +GTAGAGCTATTTTACACATACCTAGAAGAATCAGACAGGGCTTAGAAAGGGCTTTGCTAT +AACATGGGGGGCAAGTGGTCAAAAAGTAGCCTAGTAGGGTGGCCTAAGATCAGGGAAAGA +ATAAGACAAACTCCCCCAACAGAAGGAGGAGATGCCCGGCTGCTGGAAGAGCAAGAAGAA +GAGGAGGTAGGCTTTCCAGTCAGGCCACAGGTACCTCTAAGACCAATGACTTGGAAGGCA +GCTATGGATATCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTAATTTACTCC +AAGAAGAGACAAGAAATCCTTGATCTGTGGGTATACAACACACAAGGTTTCTTCCCTGAC +TGGCAGAATTACACACCAGGGCCAGGGATCAGGTACCCACTAACATTTGGATGGTGCTTC +AAGCTAGTACCAGTTGATCCAGCAGAAGTGGAGAAGGCTAATGAGGGAGAGAATAACAGC +CTGTTACACCCTATATGCCAACATGGAATGGATGATGAGGAGAGAGAAACATTAATATGG +AAGTTTGACAGCAGCTTGGCATTTGTACACAAAGCCCAAGAGCTGCATCCGGAGTTCTAC +AAAGACTGCTGA +>A1.GB.2013.0.15171_1_44.3.MF109677 MF109677 +ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATACATGGGAGAAAATTCGG +TTAAGGCCAGGGGGAAAGAAAAAGTATAGATTAAAGCATCTAGTATGGGCAAGCAGGGAG +CTGGAAAGATTTGCACTTAACGCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATA +ATGAACCAGTTACAATCAGCTCTCAAGACAGGAACAGAAGACCTTAAATCATTATTTAAT +ACAGTAGCAGTCATCTATTGTGTACATCAAAGGATAGATGTAAGAGATACCAAAGAAGCT +TTAGATAAAGTAGAGGAGATACAAAACAAAAGTGCGCAAAAGACACAACAGGCAGCAGCT +GACACAGGAAGCAGCAACCAGGCCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGG +CAAATGATACACCAGGCTGTGTCACCTAGGACTTTAAATGCATGGGTGAAAGTAATAGAA +GAGAGGGCTTTCAGCCCAGAAGTGATACCCATGTTCTCAGCATTATCAGAAGGGGCCACC +CCGAGTGACTTAAATATGATGCTGAACATAGTGGGAGGACACCAGGCAGCTATGCAAATG +TTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGTTACATCCAGTACATGCA +GGGCCTATTGCACCAGGCCAGGTGAGAGAACCAAGGGGAAGTGATATAGCAGGAACTACT +AGTACCCTTCAAGAACAAATAGCATGGATGACAGCCAACCCACCTATCCCAGTGGGAGAC +ATCTATAAAAGATGGATCATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCAGTT +AGCATTTTGGATATAAAACAAGGACCAAAAGAACCCTTCAGAGATTATGTAGATAGGTTC +TTTAAAACTCTTAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAATCC +CTGCTGATCCAAAATGCAAATCCAGATTGTAAGAGCATTTTAAAAGCATTAGGAGCAGGG +GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCA +AGGGTTTTGGCTGAGGCAATGAGCCAAGCCCAACATACAAACATAATGATGCAGAAAGGC +AATTTTAGGGGCCAGAAAAGGATTAAGTGTTTCAACTGTGGCAAAGAAGGACATCTAGCC +AGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAGTGTGGGAAGGAGGGACACCAA +ATGAAAGACTGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCAGCAAG +GGGAGGCCAGGAAATTTTCCACAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGCTC +TTTGGGATGAGGGAAGAGATAGCCCCCCCTCCGAAGCAGGAGCAGAACGACAGGGACAAC +ACCTTCAGTTTCCCTCAAATCACTCTTTGGCAACGACCTCTTGTCACAGTAAAAGTAGGA +GGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATA +AATTTGCCAGGAAAATGGAAGCCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTA +AGACAGTATGATCAGATACTTATAGAAATTTGTGGGAAAAAGGCTATAGGTACAGTATTA +GTAGGACCCACACCTGTCAACATAATTGGAAGAAATATGTTGACCCAGATTGGTTGTACT +CTAAATTTTCCAATTAGTAATGTTGAGACTGTACCAGTAAAACTAAAGCCAGGAATGGAT +GGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAGAAAATAAAAGCATTAACAGAAATT +TGTACAGAGATGGAAAAAGAGGGAAAAATCTCAAAAATTGGGCCTGAAAATCCATACAAT +ACTCCAATATTTGCTATAAAGAAAAAGGACAGCACTAAATGGAGAAAATTAGTAGATTTC +AGAGAACTCAATAAAAGAACTCAGGATTTTTGGGAAGTTCAATTAGGAATACCGCATCCA +GCGGGCTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGACGCATATTTTTCA +GTGCCTTTAGATGAAAGCTTTAGAAAGTATACTGCGTTCACCATACCTAGTACAAACAAT +GAGACACCAGGAATCAGGTATCAGTACAATGTGCTTCCCCAGGGCTGGAAAGGATCACCA +GCAATATTCCAGAGTAGCATGACAAAAATCTTACAGCCCTTTAGGTCAAAAAATCCAGAA +ATAATTATCTATCAATACATGGATGACTTATATGTAGGATCTGATTTAGAAATAGGGCAG +CATAGAGCAAAAGTAGAGGAGTTGAGAGCTCATCTGTTGAGCTGGGGGTTAACTACACCA +GACAAAAAGCATCAGAAAGAACCCCCATTTCTTTGGATGGGATATGAACTCCATCCTGAC +AAGTGGACAGTCCAACCAATACAGTTGCCAGAAAAGGAAAGTTGGACTGTCAATGATATA +CAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAAATTTATACAGGAATTAAAGTAAAA +CAATTGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGATATAGTACCATTAACTGAA +GAAGCAGAATTAGAATTGGCAGAGAACAGGGAGATTCTAAAAAACCCTGTGCATGGGGTA +TATTATGACCCAGCAAAAGACTTAATAGCAGAGATACAGAAACAAGGACAAGACCAATGG +ACATATCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCAAGACAG +AAGTCTACTCACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAAGTGGTTACA +GAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAAACTACCCATACAAAAAGAAACA +TGGGAAACATGGTGGAGGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTC +AATACCCCTCCCCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGCAGGAGCA +GAGACTTTCTATGTAGATGGGGCAGCCAATAGGGAAACTAAGATAGGGAAAGCAGGGTAT +GTCACTGATAAAGGAAGACAAAAGGTTGTTTCCCTAAATGAGACAACAAATCAAAAGACT +GAATTACATGCAATCTATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAACATAGTAACA +GACTCACAGTATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGAATCAGAGATA +GTCAATCAAATAATAGAGAAGTTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTACCA +GCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTGGTCAGTTCTGGAATCAGA +AGGGTGCTATTTTTAGATGGGATAGATAAAGCTCAAGAAGATCATGAAAAATATCACAGC +AATTGGAGAACAATGGCTAGTGATTTTAATCTGCCACCTGTAATAGCAAAGGAAATAGTA +GCCAGCTGTGATAAATGCCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGCAGT +CCAGGGATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTAATTCTGGTAGCAGTC +CATGTAGCCAGTGGCTATATAGAAGCAGAAGTCATCCCAGCAGAAACAGGACAGGAGACA +GCATACTTTTTGCTAAAACTAGCAGGAAGATGGCCAGTAAAAATGGTACACACAGACAAT +GGCACCAATTTCACCAGCGCTGCCTTTAAAGCAGCCTGTTGGTGGGCAAATGTTAAACAG +GAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTGGTAGAATCTATGAATAAAGAA +TTAAAGAAAATCATAGGGCAAGTAAGAGAGCAAGCAGAACACCTTAAGACAGCAGTACAA +ATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGG +GAAAGAATAATAGACATAATAGCAACAGACATACAAACTAGAGAATTACAAAAACAAATT +ACAAATATTCAAAAATTTCGGGTCTATTACAGGGACAGCAGAGATCCAATTTGGAAAGGA +CCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTGGTCATACAGGATAATAGTGATATA +AAGGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGT +GATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACA +TCATATGTATGTCTCAAGAAAAGCTAGCAAGTGGTTTTATAGACATCACTATGAAAGCAG +GCATCCAAAAGTGAGTTCAGAAGTACACATCCCACTAGGGGACTATGTTAGTAGTAAGAA +CATATTGGGGACTGCATACAGGAGAAAAAGACTGGCACTTGGGTCATGGGGTCTCCATAG +AATGGAGGCTCAAACGATATAGCACACAAATAGACCCTGACCTGGCGGACCAACTAATTC +ATCTGCATTATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAGGCCATATTAGGACAAG +TAGTTAGCCCTAGTTGTGAATATCAAACAGGACACAGCAAGGTAGGATCTCTACAATATT +TAGCACTAAAAGCACTAGTAACACCAATAAGGGTAAAGCCACCTCTGCCTAGTGTTAGGA +AATTAGCAGAGGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCTCAAAGGGAACCATA +CAATGAATGGATGTTAGATCTGTTAGAAGATCTGAAGAATGAAGCCGTTAGACATTTCCC +TAGGCCATGGCTTCATGGATTAGGACAACACATCTACAACACCTATGGGGATACTTGGGA +AGGGGTTGAAGCTATAGTAAGAATTCTGCAACAACTACTGTTTGTTCATTTCAGAATCGG +GTGCCAACATAGCAGAATAGGCATTATTCAAGGGAGAAGAGGCAGGAATGGAGCCGGTAG +ATCCTAACCTAGAGCCCTGGAACCATCCGGGAAGTCAGCCTACAACTCCTTGTAGCAAGT +GTTACTGTAAAGTGTGTTGCTATCATTGCGTAGTTTGCTTTCAGAAAAAAGGCTTAGGCA +TCTCCTATGGCAGGAAGAAGCGGAACCAGCGACGAGGACCTCATCAAAACAGTGAGACTC +ATCAAAATCTTGTACCAAAGCAGTAAGAGTAAATGTAATGNCTTTGGAAATCTATGCAAT +AGCAGGACTAGTAGTGGCACTAATCATAGCAATAGTTGTGTGGACTATAGTAGGTATAGA +ATATAAGAGATTGCTAAAGCAAAGGAAAATAGATAGGTTAATTGAGAGAATAAGGGAAAG +AGCAGAAGACAGTGGCAATGAGAGTGAGGGGGATACAGAGGAATTGGCAGCACTTGTCGA +GATGGGGACTATAATCTTGGGTATGATAATGATCTGTAGTGCTACAAACTTGTGGGTTAC +TGTCTACTATGGGGTACCTGTGTGGAAAGATGCAGAGACCACTCTATTTTGTGCATCAGA +TGCTAAAGCACATAAGGCAGAAGTGCATAATGTATGGGCTACACATGCCTGTGTGCCCAC +AGACCCCAACCCACAAGAAATAAAGTTGGAAAATGTGACAGAAGAGTTTAACGTGTGGAA +AAACAGCATGGTAGAGCAGATGCAGACAGATATAATCAGTCTATGGGACGAAAGCCTAAA +GCCATGTGTAAAGTTAACCCCTCTCTGCGTCACTTTACAGTGTACCAATAACGTTACCAA +GAACAGCACGGGAGAAATAAAAAACTGCTCTTTCAATATGACCACAGAACTAAGGGATAA +GAAACATAAAACATATGCACTTTTTTATAGACTTGATATAGTACCCATNTATAGATTAAT +AAATTGTAATACCTCAGCCATTACACAAGCTTGTCCAAAGGTAACCTTTGAGCCAATTCC +TATACATTATTGTGCCCCAGCTGGTTTTGCAATCCTAAAGTGCAATGATGAGAAATTCAA +TGGAACAGGGCTATGCAGGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGT +AGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAAAAAACGGGGTAAAACTTAGATC +TGAAAATATCACAAACAATGCCAAAACCATAATAGTACAACTTGACAAACCTGTAAGAAT +TAATTGTACCAGACCTAACAACAATACAAGAAAAAGTATCCATATAGGGCCAGGACAAGC +ATTCTATGGAGCAGGTGATATAATAGGGGATATAAGGCAAGCACATTGTAATGTCAGTAG +TTCAGATTGGAATGAAACTCTACAAGAGGTAGTCAAACAATTAAGAGAACACTGGAACAC +AACAATAATCTTTAATAGCTCAGCAGGAGGGGATTTAGAAATTACAACACATAGTTTTAA +TTGTGGAGGAGAATTTTTCTATTGTAATACATCAAACCTGTTTAATATAACTCTTCAATG +CAGAATAAAGCAAATTATAAATATGTGGCAGAGAGCAGGACAGGCAATGTATGCCCCTCC +CATCCCAGGAATAATAAGGTGTGATTCAAACATTACAGGAATATTATTAACAAGAGATGG +TGGNGAAACCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATA +TAAGTATAAAGTAGTAAAAATTGAACCACTAGGAATAGCACCCACCAGGGCACGGAGAAG +AGTGGTGGAGAGAGAAAAAAGAGCAGTTGGACTGGGAGCTGTATTCATTGGGTTCTTAGG +AGCAGCAGGAAGCACTATGGGCGCGGCGTCAATGACGCTGACGGTACAGGCCAGACTATT +ATTGTCTGGCATAGTGCAACAGCAAAGTAATTTGCTGAGGGCTATAGAGGCTCAACAGCA +TCTGTTGAAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGA +GAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCATCTG +CACCACTAATGTGCCCTGGAACTCTAGTTGGAGTAATAAAAATCTCAGTGGGATATGGGA +TAACATGACCTGGCTGCAATGGGACAAAGAAATTAGCAATTACACAGAAGAAATATATAA +ACTGATTGAAGAGGCGCAAAACCAGCAGGAAAAGAATGAACAAGAATTATTGGCATTGGA +CAAGTGGGCAAATCTGTGGAGTTGGTTTGACATATCAAACTGGCTGTGGTATATAAGAAT +ATTTATAATGATAGTAGGAGGCTTAATAGGACTAAGAATAGTTTTTGCTGTGCTTTCTGT +AATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGACCCATACCCCGAACCC +ACGGGGTCTCGACAGGCCCGAAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGACAG +ATCGATTCGATTAGTCAGCGGCTTCTTAGCGATTGCCTGGGACGACCTGCGGAGCCTGTG +CCTCTTCAGCTACCACCGATTGAGAGACTTCACCTTGATTGCAGCGAGGACTGTGGAGGG +GTGGAAGGGACTCAAGTATCTGGGGAATCTCCTACTGTATTGGGGTCGGGAACTAAGAAT +TAGTGCTATTAGTTTGTTTGATACCATAGCAATAGTAATAGCTGGCTGGACAGACAGGGT +TATAGAAATAGGACAAAGAATTGGTAGAGCTTTTCTCAACATACCTAGAAGAATCAGACA +GGGCACCGAAAGGGCTTTACTATAAAATGGGTAACAAGTGGTCAAAGGGATGGCCTCAGG +TTAGGGAAAGAATGAGACGCAGCAGCAAAAGGAGTAGGAGCAGTATCACAAGATCTAGAA +AAACATGGAGCAATCACCAGCAGCAATATAAATCACCCTAGTTGTGTCTGGCTGGAAGCA +CAAAAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCACAAGTACCTTTAAGACCAATGACT +TACAAAGGAGCTTTTGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTA +ATTTACTCCAGGCAAAGAGCTGACATCCTTGATCTGTGGGTCTACAACACACAAGGCTAC +TTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATTAGATACCCACTAACATTTGGA +TGGTGTTTCAAGCTAGTACCAGTTGATCCAGATGAAGTAGAGAAGGCTAATGAGGGAGAG +AACAATAGCCTATTACACCCTATGTGCCAACATGGAATGGATGATGAAGAGAAAGAAACA +TTAAAGTGGGTGTTTGACAGCCGCCTGGCATTAAAACACAGAGCCCTAGAGCTGCATCCG +GAGTTCTAG +>A1.TZ.2005.0.CO3083V4.KX907364 KX907364 +GCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGG +CCAGGGGGAAAGAAAAAATATAAAATGAAACATCTAGTATGGGCAAGCAGGGAGCTGGAA +AGATTCGCACTTAACCCTAGCCTTTTAGAAACGACAGAAGGGTGTCAACAAATAATGGAA +CAGTTACATTCAGCTCTCAACACAGGAACAGAAGAACTTAAATCATTGTTTAATACAGTA +GCAACCCTCTATTGTGTACATCAAAAGATAGATGTAAGAGACACCAAAGAAGCTCTAGAT +AAAATAGAGGAAATAAAAAATAAGAGCAAGCAAAAGACACAACAAGCAGCAGCTGACACA +GGAAACAGCAGCAAGGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATG +ATACACCAGAACTTGTCACCTAGGACTTTAAATGCATGGGTGAAAGTAATAGAAGAAAAG +GCTTTCAGCCCAGAAGTAGTACCCATGTTTTCAGCATTATCAGAAGGAGCCACTCCACAA +GATTTAAATATGATGTTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAATGTTAAAA +GATACCATCAATGAGGAAGCTGCAGAATGGGACAGGCTACATCCAACACATGCAGGGCCT +ATCCCACCAGGCCAGATAAGAGAACCAAGGGGAAGTGATATAGCAGGAACTACTAGTACC +CCTCAAGAACAGCTACAATGGATGACAGGCAACCCACCTATCCCAGTGGGAGACATCTAT +AAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTGTTAGCATT +TTGGATATAAGACAAGGGCCAAAAGAACCCTTCAGAGATTATGTAGATAGGTTCTTTAAA +GCTCTCAGAGCTGAGCAAGCTTCACAAGATGTAAAAAATTGGATGACAGACACATTACTG +GTCCAAAATGCGAATCCAGATTGTAAGTCCATTTTAAAAGCATTAGGAGCAGGGGCTACA +TTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAGGCAAGGGTT +TTAGCTGAGGCAATGAGTCAAGCACAACATGCAAACATAATGATGCAGAGAGGCAATATT +AGGGGTCAAAGAAGGATTAAGTGCTTTAACTGTGGCAAAGAAGGACACCTAGCCAGAAAT +TGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGGAAAGAGGGACACCAAATGAAA +GACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGG +CCAGGGAATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGACCTCCTYGGG +ATGGGGGAAGAGATAACTTCCCCTCAGAAGGAGCAGAAAGACAGGGAACTGGGCCCACCC +TTAGTTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTTACAGTAAAAATAGGAGGAC +AGATAAAAGAAGCTCTGTTAGATACAGGAGCAGATGATACAGTATTAGAAGATATAAATT +TGCCAGGAAAATGGAAACCAAGAATGATAGGGGGAATTGGAGGGTTCATTAAGGTAAAAC +AGTATGATCAGATATCTATAGAAATTTGTGGGAAAAAGGCTATAGGTACAGTATTGGTAG +GACCCACACCTGTCAACATAATTGGAAGAAATATGTTGACCCAGATTGGTTGTACTTTAA +ATTTCCCAATTAGTCGTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGTC +CAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTA +CAGAGATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTC +CAATATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGGAAATTAGTAGATTTTAGAG +AGCTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCGCATCCAGCGG +GACTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTC +CTTTAGATGAAAGCTTTAGAAAGTACACTGCGTTCACCATACCCAGTACAAACAATGCAA +CACCTGGAGTCAGGTATCAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCGGCAA +TATTCCAGAGTAGCATGACAAAGATCTTAGAGCCCTTTAGATCAAAAAATCCAGACATAA +TCATCTATCAATACATGGATGACTTGTATGTAGGATCTGATTTAGAAATAGGGCAGCATA +GAACAAAAGTAGAAGAATTGAGGGCTCATCTATTGAGCTGGGGATTGACTACCCCAGACA +AAAAGCATCAGAAAGAACCACCATTCCTTTGGATGGGATATGAACTTCATCCTGACAAGT +GGACAGTCCAGCCTATAGAGCTGCCAAAAAAGGAAAGCTGGACTGTCAATGATATACAGA +AATTAGTGGGAAAACTAAATTGGGCAAGTCAAATTTATCCAGGGATTAAAGTAAAGCAAC +TGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGATATAGTAACAATGACTGAGGAAG +CAGAATTAGAATTGGCAGAAAACAGGGAGATTCTAAAAGACCCTGTGCATGGAGTATACT +ATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACAT +ATCAAATTTATCAAGAACCATTTAAAATTCTAAAAACAGGAAAATATGCCAGAAAGAGGT +CTGCTCACACTAATGATGTAAAACAATTAACAGATGTGGTGCAAAAGGTGGTCATGGAAA +GCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGG +AAACATGGTGGGTGGACTATTGGCAGGCTACCTGTATTCCTGAATGGGAGTTTGTCAATA +CCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGAAGGAGCAGAGA +CTTTCTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTCA +CAGACAAAGGAAGACAAAAGGTTGTTTCCCTGACTGAGACAACAAATCAAAAGACTGAGC +TACATGCAATCCATCTAGCTTTGCAGGATTCAGGATCAGAAGTAAATATAGTAACAGATT +CACAGTATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGACTCAGAGTTAGTCA +ACCAAATAATAGAGAAGCTAATAGGAAAGGACAAAGTCTACCTGGCATGGGTACCAGCAC +ACAAAGGAATTGGAGGGAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGG +TGCTGTTTTTGGATGGGATAGATAAAGCTCAAGAAGACCATGAGAAATATCACAGCAACT +GGAGAGCAATGGCTAGTGATTTTAATCTGCCACCTATAGTAGCAAAGGAAATAGTAGCCA +GCTGTGATAAATGTCAACAAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAG +GGATGTGGCAATTAGATTGCACACATTTAGAAGGAAAAGTAATTCTGGTAGCAGTCCATG +TAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACAGGAT +ACTTTCTGCTAAAATTAGCGGGAAGATGGCCAGTAAAAGTAGTACACACAGATAATGGCA +GCAATTTCACCAGCGCTGCGTTTAAAGCAGCCTGTTGGTGGGCAGGTATCCAACAGGAAT +TTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGGAATTAA +AGAAAATCATAGGACAAGTAAGAGAGCAAGCTGAGCACCTTAAAACAGCAGTACAAATGG +CAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAA +GAATAATAGACATGATAGCAACAGACATACAAACTAAAGAATTACAAAAAAATATTACAA +AAATTCAAACTTTTCAGGTTTATTACAGAGACAGCAGAGATCCGATTTGGAAAGGACCAG +CAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGATATAAAGG +TAGTACCAAGAAGAAAAGCAAAAATCATTAGGAATTATGGAAAACAGATGGCAGGTGATG +ATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCAT +ATGCATGTCTCAAAGAAAGCAAAAAATTGGTTTTATAGACATCACTTTGAAAGCAGGCAT +CCAAAAGTAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAATAGTTAGGACA +TATTGGGGTCTGCATACAGGAGAAAAAGATTGGCAATTGGGTCATGGGGTCTCCATAGAA +TGGAGGCAAAAAAGATATAGCACACAAATAGATCCTGATCTGGCAGACCAACTAATTCAT +CTGCACTATTTTCAATGTTTTTCAGACTCTGCCATAAGGAAAGCAATATTAGGACAAGTA +GTTAGCCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATATTTG +GCACTGAAAGCATTAATAACACCAAAAAGAAGAAAGCCACCTTTGCCTAGTGTTAGGAAA +TTAACAGAGGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGCCATACA +ATGAATGGGCATTAGAACTGTTAGAAGAGCTTAAGCATGAAGCTGTTAGGCACTTTCCTA +GGCCATGGTTACATGGATTAGGGCAACATATCTATAATACCTATGGGGATACTTGGGAAG +GAGTTGAAGCTATAATAAGAATGTTGCAACAATTACTGTTTGTTCATTTCAGAATTGGGT +GCCAACATAGCAGAATAGGTATTATGCGGGGGAGAAGAGTCAGGAATGGATCCAGTAGAT +CCTAACCTAGAGCCTTGGAACCACCCGGGAAGTCAGCCTGCAACTGCTTGTAGCCAGTGT +TATTGTAAAGTGTGTTGCTATCATTGCCAGTGGTGCTTTCTGCGCAAAGGCTTAGGCATC +TCCTATGGCAGGAAGAAGCGGAGACAGCGACGAGGACCTCCTCAGAGCAATAAGGATCAT +CAAAATCCTATACCAAAGCAGTAAGTATTAGCAGTTAGTATATGTAATGACTCCTTTGGA +AATCAGTGCAGTAGCAGGACTGATAGTGGCGCTAATTCTAGCAATAGTAGTGTGGACTAT +AGTAGGGATAGAATATAAGAGATTGCTAAAGCAAAGAAAAATAGATAGGTTAATTAAGAG +AATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGACGGGGACACAGATGACCTCGC +AACACTTATCAATATGGGGGACTATGATCTTGGGAATGATAATAATCTGTAATGCTACAA +CTACAGACAAGATGTGGGTTACGGTCTACTATGGGGTACCTGTGTGGAAAGATGCAGAGA +CCACCCTATTTTGTGCATCAGATGCAAAAGCATATGATCCAGAAATGCATAATGTCTGGG +CTACACATGCCTGTGTTCCTACAGACCCTAACCCACAAGAAATAAATTTGGAAAATGTGA +CAGAACAGTTTAACATGTGGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATCA +GTCTATGGGACCAAAGCCTAAAACCATGTGTAAAGTTAACCCCTCTCTGTGTTACTCTAG +AATGTACCAATGCCAATATCACCAATAATATCACCAATGCCAATGTCACCAATGACATGC +AAGAAGTAAAAAACTGCTCTTTCAATATAACCACAGAACTAAGGGATAAAAGAAAGAAAA +TATATTCACTTTTTTATAGACTTGATATAGTACAAATAAATGAAGGGGAGGATACTAATA +ATAGTAGTAATAGTAGTCAGTATAGATTAATAAACTGTAATACCTCAGCCATCACACAAG +CTTGTCCAAAGGTAACCTTTCAGCCAATCCCCATACATTATTGTGCCCCAGCTGGTTTTG +CGATTCTAAAGTGTAATGATGAGGATTTCAATGGGACAGGACTATGTAAGAATGTCAGCA +CAGTACAATGCACACATGGAATCAAGCCAGTAGTATCAACGCAACTGCTGTTAAATGGAA +GTCTAGCAGAAGGAAATGTAACAATTAGATCTGAAAATTTTACAAACAATGCCAAAAACA +TACTAGTACAATTTAAAAAGCCTGTACAAATTAATTGTACTAGACCTAGCAACAATACAA +GGACAAGTGTACGTATAGGACCAGGACAATCATTCTATGCAACAGGTGCCATAATAGGGG +ATATAAGACAAGCACATTGCAATGTCAGTGCAGCAGAATGGAATACAACTTTGAAAAGTG +TGGTTGACCAATTAAGAAAACACTTTGGAGAAAACAAAACAATAATYTTTACTAACCACT +CAGGAGGGGATCTAGAAATTACAACACATAGTTTTAATTGTGGAGGAGAATTTTTCTATT +GTAACACATCAGCCCTGTTCAATAGCAGTTGGAGTAGTGTAAATGACAGCGGGAACATTA +GCCCAGAGCCAAACAAAAATATAACCCTCCGATGCAGAATAAAGCAAATTATAAATATGT +GGCAGAGAGTAGGACAAGCAATATATGCCCCTCCCATCCAAGGAGTAATAAGGTGTGACT +CAAACATTACGGGATTAATATTAACAAGCGATTATGGAGGGACTAACAGTACACATGAAA +TCTTCAGACCTGCAGGAGGAAATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATA +AAGTAGTACAAATTGAACCAATAGGAGTAGCACCCATCAGGGCAAAGAGAAGAGTGGTGG +AGAGAGAAAAAAGAGCAGTCGGACTGGGAGCTGTCTTCCTTGGTTTCTTAGGAGCAGCAG +GAAGCACTATGGGCGCGGCGTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTG +GTATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCTCAACAGCATCTGTTGA +AACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAGAGATACC +TAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAGCTCATCTGCACCACTA +ATGTGCCCTGGAACTCTAGTTGGAATAATAAATCCTTCAATGAAATATGGGACAACATGA +CCTGGCTGCAATGGGATAAAGAAATTAGCAATTACACACAGATAATATATGACCTAATTG +AAGAATCGCAGAACCAGCAGGAAAAGAATGAACAAGATTTATTGGCATTGGACAAGTGGG +CAAATCTGTGGAATTGGTTTGACATATCAAACTGGTTGTGGTATATAAGAATATTTATAA +TAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTGTTGCAGTGTTTTCTATAATAAATA +GAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGATCCATACCCCAAACCCAGGGGGTC +CCGACAGGCCCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGGCAGATCGATTC +GATTAGTGAGCGGATTCTTAGCACTTGCGTGGGACGATCTCAGGAACCTGTGCCTCTTCA +GCTACCACCGATTGAGAGACTGCATCTTGATTGCCGCGAGGACTGTGGAACTTCTGGGAC +GCAGCAGTCTCCAGGGGTTGAGACTGGGGTGGGAAGGCCTCAAGTACCTGGGGAACCTCC +TGGAATATTGGGTTCGGGAGCTAAAAATTAGTGCTATTAATTTGCTTGATACCATAGCAA +TAGCAATAGCTAACTGGACAGATAGGGGTATAGAAATAGGACAAAGACTTTGTAGAGCGC +TTTTAAACATACCTAGAAGAATCAGACAGGGCTTTGAAAGGGCTTTGCTATAACATGGGG +GGCAAGTGGTCAAAAAGTAGCATAGTGGGCTGGCCTGAGGTTAGGGAAAGAATAAGACAA +ACTCCAGCAGCAGCAAGAGGAGTGGGAGCAGTATCTCAAGATTTAGATAAACATGGAGCA +ATCACAAGCAGCAATATAAATCACCCTAGTAACACCTGGCTGGAAGCGCAAGAGGAAGGG +GACGAAGTAGGCTTTCCAGTCAGGCCACAGGTCCCTACAAGACCAATGACTTACAAGGCA +GCTGTGGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTAATTCACTCC +AGACAGAGACAAGATATCCTTGATCTGTGGGTATACAACACACAAGGCTTCTTCCCTGAT +TGGCAGAACTACACTCCAGGGCCAGGGATTAGGTATCCACTAACATTTGGATGGTGCTTC +AAGCTAGTACCAGTTGATCCAGGAGAAGTAGAGAAGGCTACTGAGGGAGAGAACACCAGC +CTATTACACCCTATAAGTCAACATGGAATGGATGATGATGAGAAAGAAACATTAATGTGG +AAGTTTGACAGCAGGCTGGCCTTTAAACACACAGCCCGTGAGCTGCATCCGGAGTTCTAC +AAAGACTGCTGACACAGAAACTGCTGATGGGGACTTTCCGCTGGGGACTTTCCAGGGGAG +GTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAA +>A6.RU.2016.0.RU_ERS_1091_2016.MT369972 MT369972 +TGCTGAGTGCACACAGCAAGAGGCGAGGCGGCGGCGACTGGTGAGTACGCCTAAGATTTT +TGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCGGTCTTAAGCGGGGGA +AAATTAGATGCATGGGAAAAAATTCGGTTACGGCCAGGGGGAAAGAAACAATATAGAATA +AAACACCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCGCTTAACCCTAGCCTTTTA +GAAACATCAGAAGGATGTCAACAAATACTGGAGCAGTTACAATCAACGCTCAAGACAGGA +TCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCAAAGG +ATAGAAATAAAAGACACCAAGGAAGCTTTAGATAAAATAGAGGAAATACAAAATAAGAAC +AAGCAAAAGACTCAACAGGCAGCAACTGGCACAGGAAGCAACAGCAAGGTCAGTCAAAAC +TACCCCATAGTGCAAAATGCACAAGGGCAAATGACACACCAGTCCATGTCACCTAGGACT +TTGAATGCATGGGTGAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATG +TTTTCAGCATTATCAGAGGGAGCCACCCCACAAGATTTAAACATGATGTTGAACATAGTG +GGGGGACACCAGGCAGCTATGCAAATGTTAAAAGATACCATCAATGAGGAAGCTGCTGAA +TGGGATAGGATACATCCAGCACARGCAGGGCCTTTTCCACCAGGGCAGATGAGAGAACCA +AGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACA +AGCACCCCACCTATTCCAGTGGGAGAAATCTATAAAAGATGGATAATCCTAGGAYTAAAT +AAAATAGTACGAATGTATAGCCCTGTTAGCATTCTAGACATAAGACAAGGGCCAAAAGAA +CCCTTCAGAGACTATGTAGATAGATTCTTTAAAACTCTTAGAGCTGAGCAAGCTACACAG +GAGGTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCAAACCCAGATTGTAAA +AGTATTTTAAGAGCATTAGGATCAGGGGCTACATTAGAAGAAATGATGACAGCATGCCAG +GGAGTGGGAGGACCCGGCCACAAAGCAAGGGTTTTGGCCGAGGCAATGAGTCAAGTACAA +AATGCAAACATAATGATGCAGAAAAGTAATYKTAGGGGCCCAAAAAGAATTAAGTGTTTC +AACTGTGGCAAAGAAGGACACTTAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGT +TGGAAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTT +TTAGGGAGGATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTCCCTCAGAGCAGACCA +GAGCCATCAGCCCCACCAGCAGAGAACTTTGGGATAAGGGAAGAGATAACCCCCTCCCTG +AAACAGGGGCAGACAGACAGGGACCAACATCCTCCTTCAATTTCCCTCAAATCACTCTTT +GGCAACGACCCCTTGTCACAGTAAAAATAGGAGGACAGATAAAAGAAGCTCTATTAGATA +CAGGAGCAGATGATACGGTATTGGAAGACATAAATTTACCAGGAAAATGGAAACCAAAAA +TAATAGGGGGAATTGGAGGTTTTATCAAGGTAAGACAGTATGATCAGATACTCATAGAAA +TTTGTGGAAAAAAGGCTATAGGTACGGTATTAGTAGGGCCTACCCCTGTCAACATAATTG +GAAGAAATATGTTGACTCAGCTTGGTTGTACTTTAAATTTTCCAATAAGTCCTATTGAAA +CTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTAA +CAGAGGAAAAAATAAAAGCATTAATAGACATTTGTAAGGAGATGGAAAAGGAAGGAAAAA +TTTCAAAAGTTGGGCCTGAAAATCCATACAATACTCCAGTATTTGTTATAAAGAAAAAAG +ATAGCACTAAGTGGAGGAAATTAGTAGATTTCAGGGAGCTCAATAAAAGAACTCAGGACT +TTTGGGAAGTTCAATTAGGAATACCCCACCCAGCGGGCTTAAAAAAGAAAAAATCAGTAA +CAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGATAAAAACTTCAGAAAGT +ATACTGCATTCACTATACCAAGTACAAACAATGAGACACCAGGGATCAGATATCAGTACA +ATGTACTCCCACAGGGATGGAAAGGATCACCATCAATATTCCAGAGTAGCATGACAAAAA +TCTTAGAGCCATTTAGAGAAAGAAATCCAGAAATAGTTATCTATCAATACATGGATGACT +TGTATGTAGGCTCTGATTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGTTAAGAG +CTCATCTATTGAGCTGGGGATTTACTACACCAGACAAAAAGCATCAGAAAGAACCTCCAT +TTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAGCCTATAATACTAC +CAGATAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGG +CAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAATTGTGTAAACTCCTCAGGGGAGCCA +AAGCACTGACAGAKGTAGTGACACTGACTAAGGAAGCAGAATTAGAATTGGAGGAGAACA +GAGAGATTTTAAAAGAACCTGTGCATGGAGTATATTATGACCCATCAAAAGATTTAGTAG +CAGAAATACAGAAACAAGGACAAGGTCAATGGACATATCAAATTTATCAGGAGCCATTTA +AAAATCTAAAAACAGGTAAATATGCAAAAAGGGGGTCTGCTCATACGAATGACGTGAAAC +AATTAACAGCAGTRGTGCAAAAAGTGGCCACAGAAGGCATAATAATATGGGGAAAGATTC +CTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAGCATGGTGGATGGAGTATTGGC +AGGCTACCTGGATTCCTGAATGGGAGTGTATCAATACYCCTCCTCTAGTAAAACTATGGT +ACCAATTGGAAAAAGAACCCATAATGGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTA +ACAGGGAGACTAAGATAGGAAAAGCAGGGTATGTTACTGACAGAGGAAGACAAAAGATTG +TTCCTCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATCCATCTAGCTTTAC +AGGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATTATTC +AGGCACAACCAGACAGGAGTGAATCAGARATAGTCAATAAAATAATAGAGAAACTAATAG +GAAAAGAAAGAGTCTACCTGTCATGGGTACCAGCGCACAAGGGGATTGGAGGAAATGAAC +AAGTGGATAAATTAGTTAGTAATGGAATCMGGAGGGTGTTATTTTTAGAAGGRATAGATA +GGGCTCAAGAAGACCATGAAAAATATCACAGCAATTGGAAAGCAATGGCTAGTGATTTTA +ATCTGCCACCTGTAGTAGCAAAGGAAATAGTAGCTAGCTGTAATAAATGCCAATTAAAAG +GGGAAGCTATGCATGGACAGGTAGACTGTAGTCCGGGGATATGGCAATTAGATTGTACAC +ATCTAGAAGGAAAAGTAATCATAGTAGCAGTCCATGTAGCCAGTGGATATATAGAAGCAG +AAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTCCTGCTAAAATTAGCAGGAA +GATGGCCAGTAAAAGTAGTACACACAGATAATGGCCCAAATTTCACCAGCAGTGCAGTTA +AGGCTGCCTGTTGGTGGGCAAATATTCAACAGGAATTTGGGATTCCCTACAATCCCCAAA +GTCAAGGAGTAGTGGAGTCTATGAATAAGGAATTAAAGAAAATCATCGGGCAGGTAAGAG +AGCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAA +GAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAG +ACATACAAACTAAAGAATTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATT +ACAGAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAG +GGGCAGTGGTAATACAGGACAATAACGATATAAAAGTAGTACCAAGAAGAAAAGCAAAGA +TTATTAGAGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAATAGACAGGATG +AAGATTAGAACATGGCATAGTTTAGTAAAACATCATATATATGTCTCAAAGAAAGCTAGA +GAGTGGCTTTATAGACATCATTATGAAAGCAGACATCCAAGAGTAAGTTCAGAAGTACAC +ATCCCACTAGGGGATGCTAGGCTAGTAGTAAAAACATATTGGGGTCTGCATGCAGGAGAA +AGAGACTGGCACTTGGGTCATGGGGTCTCMATAGAATGGAGACAGGAAAGGTATAGCACA +CAAATAGAYCCTGACCTGGCGGACCAACTAATTCATCTGTATTATTTTGACTGTTTTTCA +GAATCTGCCATAAGGAAAGCCATAGTAGGACAAGTAGTTAGCCCTAGGTGTAACTATCCA +GCAGGACACAACCAGGTAGGACCTCTACAATATTTGGCACTGAAAGCAATAGTAACACAA +ACAAGAGAAAGGCCACCCTTGCCTAGTGTTAGGAAACTAACAGAGGATAGATGGAACAAG +CCCCAGAAGACCAGGGACCGCAGAGGGAACCATACAATGAATGGATGTTAGAACTGTTAG +AAGATCTTAAGCATGAAGCTGTCAGACATTTTCCAAGGCCRTGGCTCCATGGATTAGGAC +AACATATCTATAACACCTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGAACTT +TGCAACAACTATTGTTTGTTCATTTCAGAATTGGGTGCCAACATAGCAGAATAGGCATTG +TGCAAAGGAGAAGAGTAAGGAATGGATCCAGTAGATCCTAACCTAGAGCCCTGGAATCAT +CCGGGAAGTCAGCCTAAAACTGCTTGTAGCAATTGTTATTGTAAAATGTGTTGCTGGCAT +TGCCAAGTTTGCTTCTTAAAAAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGA +CGCAGACACGGAGYTCATCACAACAGTCAGGATCATCARAATCTTATACCAAAGCAGTGA +GTACTAAATAAATGTAATGAAACCTTTAGAAATCTGTGCAATAGCAGCATTAGTAGTAGS +ATCTGTCATAGCAATAGTTGTGTGGACTATAGTAGGTATAGAATATAGGAAATTGCTAAA +ACAAAGAAAAATAGAYAGGTTAATTGAGAGAATAAGAGAAAGAGCAGAAGACAGTGGCAA +TGAAAGCGAGGGGGATGAAGAGGAATTATCAACACTTATGGAGGTGGGGAACCATGCTCT +TTTGGATGATAATAATGTGTAAGGCTACAGGAAACTTGTGGGTCACGGTATACTATGGGG +TACCTGTGTGGAGAGATGCAGAGACCACCCTATTTTGTGCATCAGATGCTAAAGCGTATG +ATAAAGAAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAGCCCAC +AAGAAATAGATTTGGAAAATGTGACAGAAGATTTTAACATGTGGAAAAATAAYATGGTAG +AACAAATGCAGGCAGATATAATCAGTCTCTGGGACCAAAGCCTAAAGCCATGTGTAAAGT +TAACCCCTCTCTGTGTTACCTTAAATTGTACTAACCCCCAAAGCAATAACAGCAGTAGTG +GTAACAGCAAYAGCAGCGATAGTTTGTTTGAAGAAATGCAAAACTGCTCCTACAACACGA +CCACAGAACTAAGAGATAAAAAGAAAACTGTATATTCACTTTTTTATAAACTTGATATAG +TACCAACTGATAGTAATAGTARTGGGCAGTATAGACTAATAAATTGTAATACATCAGCCA +TGACACAGGCCTGTCCTAAGGTAACTTTTGAGCCAATTCCTATCCATTATTGTACCCCAG +CTGGTTTTGCGATTCTAAAATGCAAGGATATAAATTTTAATGGAACAGGGCCATGCAAGA +ATGTCAGCACAGTACAATGCACACATGGAATCAAACCAGTAGTATCAACTCAACTGCTGT +TAAATGGCAGTCTAGCAGAGAGAAATATAATGATTAGATCTAAAAATATCACAGACAATA +GCAAAATCATAATAGTACAGCTTACTAAGCCTGTAAAAATCACTTGCATCAGACCTGGCA +ACAATACAAGAACAAGTATACGTATAGGACCAGGGCAAACCTTCTATGCAACAGGTGATG +TAGTAGGGAACATAAGAAAAGCATATTGTAATGTCAGCRGAGTAAATTGGARTAACACTT +TACAAAACATAAGCGCACAATTAAGAACATATTTTAATAATAAAACAATAAACTTTAAGA +ACTCCTCAGGAGGGGATTTAGAAATTACAACACATAGTTTCAATTGTGGAGGAGAATTTT +TCTATTGCGATACAACAGACCTGTTCAATAGCACTTGGAATGTTAATGACACTRTCAATA +CCACAGAGGATGATAAAAATATAACTCTGCCATGCAGAATAAAGCAAATCATAAATATGT +GGCAGAGAGTAGGRCAAGCAATGTATGCCCCTCCTATCAGAGGAAGTATAAAGTGTGAAT +CAAACATTACAGGACTACTACTAACAAGAGATGGTGGAAATAAAACTGCKAGCAGCAGTG +AGACCTTCAGACCTATAGGAGGAGATATGAGGGAAAATTGGAGAAGTGAGCTATATAAAT +ATAAAGTAGTAAAAATTGAACCAATAGGAGTAGCACCTACCAGGGCAAAGAGAAGAGTGG +TGGAGAGAGAGAAAAGAGCAATTGGACTGGGAGCTGTCTTTCTTGGGTTCTTAGGAGCAG +CAGGAAGCACTATGGGCGCGGCGTCACTAACGCTGACGGTACAGGCCAGACAATTATTGT +CTGGCATAGTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCTCAGCAGCATCTGC +TGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGAT +ACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTGGAAGACTCATCTGCACCA +CTACTGTGCCCTGGAACTCTAGTTGGAGTAACAAATCTTATAGTGAGATATGGGAGAACA +TGACCTGGATGCAATGGGACAAGGAAGTTAATAATTACACAAGCATAATATATGATCTAA +TTGAACAATCGCAAAACCAGCAGGAAAARAATGAACAAGATTTATTGGCATTGGATAAAT +GGGCAAGTCTGTGGAATTGGTTTGATATATCAAAGTGGTTATGGTATATAAAAATATTTA +TAATAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTACTGTGCTTTCTATAATAA +ATAGAGCCAGGCAGGGATACTCACCCTTGTCATTGCAGACCCCTACCCTGCACCCAGAGG +GACCAGACAGGCCCGGAAGAATCAACGAAGAAGGTGGAAAGCAAGGCAGAGACAGATCAC +TGCGATTAGTGRGCGGATTCTTGGCACTTATCKGGGACGACCTGAGGAGTCTGTGCCTCT +TCAGTTACCACAGCTTGAGAGACTTCATCTCGATTGCAGCGAGGACGGTGGAACTTCTGG +GACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGAGCCTCAAGTATCTGGGGAATC +TCCTGAGATATTGGGGTCAGGAACTAAAGAGTAGTGCTATCAATCTAATAGATACCCTAG +CAATAGCAGTAGCTGGGGGGACAGATAGGGTTATAGMAATAGGACAAAGAKTTTGTAGAG +CCATTCGTAACATACCTAGGAGAATTAGACAGGGCGCAGAAAAGGCTTTGCAATAATATG +GGGGGTAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGGTTAGGGAAAGACTAAGG +CGAGCTCCTGCTCCAGCAGCAAGAGGAGTAGGACCAGTATCTCAAGATTTGGATARGTAT +GGAGCAGTCACAAGCAGTAATACAGCAGCTACGAATGCTGATTGTGCCTGGCTGGAGGCG +CAAGAGGACGAGGAGGTAGGCTTTCCAGTCAGGCCGCAGGTACCTTTGAGACCAATGACA +TATAAGGGAGCTCTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTA +ATTTACTCCAAGAAAAGACAAGAAATCCTTGATCTGTGGGTCTATCACACACAAGGCTAC +TTCCCTGATTGGCAGAATTATACCCCAGGGCCAGGGACTAGATTCCCACTAACCTTTGGG +TGGTGCTACAAGCTAGTGCCCGTTGACCCAGCGGACGTAGAAGAGGCCACAGAGGGAGAG +AATAACAGMCTATTACACCCTATATGCCAACATGGAATGGATGACGAAGAAAGAGAAGTG +TTAAGGTGGAAGTTTGACAGTCGCCTGGCTCTAAAACACAGAGCCCGAGAGCTGCATCCG +GAGTATTACAAAGACTGCTGACACAGACTGCTGACATGAAGTTGCTGACAGGGACTTTCT +GCGGGACTTTCCAGGGGGGGTGTGGTTTGGGTGGAGTTGGGGGAGTGGCTAACCCTCAGA +TGCTGCATATAAGCAGCTGCTTTGCACCTGTACTGGGTCTCTCTGGTTAGACCAGATCG +>A6.RU.2015.0.RU_ERS_551_2015.MT318157 MT318157 +TGCTGAAGTGCACACGGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCACATTTTTTG +ACTAGCAGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAA +ATTAGATGAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAA +ACACATAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCGCTTAACCCTGGCCTTTTAGA +AGCAGCGGAAGGATGTCAGCAGATAATGGAACAGTTACAACCATCTCTCAGGACAGGGTC +AGAAGAACTTAAGTCATTATTTAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGAT +AAAAGTAGCAGACACCAAGGAAGCTCTAGATAAAATAGAGGAAATACAAAATAAGAACAA +GCAAAAGACCCAACAGGCAGCAACTGGCACAGGAAGCAGCAGCAAGGTCAGTCAAAATTA +CCCCATAGTGCAGAATGCACAAGGGCAAATGACACACCAGTCCTTATCACCTAGGACTTT +GAATGCATGGGTGAAAGTAATAGAAGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTT +TACAGCATTGTCAGAGGGAGCCACCCCACAAGATTTAAACATGATGCTGAACATAGTGGG +GGGACACCAGGCAGCTATGCAAATGTTGAAAGATACCATCAATGAGGAAGCTGCTGAATG +GGATAGGGTACATCCAGTACAGGCAGGGCCTTTTCCAGCAGGGCAGATGAGAGAACCAAG +GGGAAGTGATATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAG +CAACCCACCTATCCCAGTGGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAA +GATAGTAAGAATGTATAGCCCTGTTAGCATTTTAGACATAAGACAAGGGCCAAAAGAACC +CTTCAGAGACTATGTAGATAGGTTCTTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGA +TGTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCAAATCCAGATTGTAAAAC +CATTTTAAAAGCATTAGGATCAGGGGCTACCTTAGAAGAAATGATGACAGCATGCCAGGG +AGTGGGAGGACCCGGCCATAAAGCAAGGGTTTTGGCCGAGGCAATGAGTCAAGTACAAAA +TGTAAACATAATGATGCAGAAAAGTAATTTTAGGGGCCCAAAAAGAATTAAGTGTTTCAA +CTGTGGCAAAGAAGGACATCTAGCCAGAAATTGCAGGGCCCCTAGGATAAGGAAAAAGGG +CTGTTGGAAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAGAGACAGGCTAA +TTTTTTAGGGAGGATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTCCCTCAGAGCAG +ACCAGAACCATCAGCCCCACCAGCAGAAAACTTTGGGATGGGGGAAAAGATAACCCCCTC +CCTGAAACAGGAACAGGAAGGCAGGGAACAGCATCCTCCTTCAATTTCCCTCAAATCACT +CTTTGGCAACGACCCCTTGTCACAGTAAGAATAGGAGGACAGCTAAAAGAAGCTCTATTA +GATACAGGAGCAGATGATACAGTATTAGAAGAAATAGATTTGCCAGGAAAATGGAAACCA +AAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTAAGACAGTATGAACAGATAACTTTA +GAAATTTGTGGAAAAAAGGCCATAGGTACGGTATTAGTAGGACCTACCCCTGTCAACATA +ATTGGAAGAAATATGTTGACTCAGCTTGGTTGTACTTTAAATTTTCCAATAAGTCCTATT +GAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCA +TTAACAGAAGAGAAAATAAAAGCATTAACAGAAATTTGTAGAGAAATGGAAAAGGAAGGA +AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCTATAAAGAAA +AAGGACGGAACTAAGTGGAGGAAATTAGTGGATTTCAGGGAGCTCAATAAAAGAACTCAG +GATTTTTGGGAAGTTCAATTAGGAATACCCCATCCAGCGGGTTTAAAAAAGAAAAAATCA +GTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCGTTAGATAAAAACTTCAGA +AAGTATACTGCATTCACTATACCAAGTATAAACAATGAGACCCCAGGGGTCAGATACCAG +TACAATGTACTTCCACAGGGATGGAAAGGGTCACCAGCAATATTTCAGAGTAGCATGACA +AAAATTTTAGAGCCCTTTAGAGAACGAAATCCAGAAATAGTGATCTATCAATACATGGAT +GATTTATACGTAGGATCTGACTTAGAAATAGGGCAGCATAGAGTAAAAATAGAAGAGTTG +AGACAACATTTATTGAAGTGGGGATTCACCACACCAGATAAAAAACATCAGAAAGAACCC +CCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTGCAGCCTATAGAC +CTGCCAGACAAGGAAAGCTGGACTGTCAATGATATACAGAAATTGGTAGGAAAACTAAAT +TGGGCAAGTCAAATTTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTCAGGGGA +GCAAAAGCACTAACAGACATAGTACCGCTAACTGCAGAAGCAGAATTAGAATTGGCAGAG +AACAGAGAAATTTTAAAAGAGCCAGTGCATGGGGTATACTATGACCCATCAAAAGACTTA +ATAGCAGAAATACAGAAACAAGGACAAGACCAATGGACATATCAAATTTATCAAGAGCCA +TTTAAGAATCTAAAAACAGGAAAATATGCAAAAAGGGGATCTGCTCACACTAATGATGTA +AAACAATTAACAGCAGTGGTGCAAAGGGTGGCCACAGAAAGCATAGTAATATGGGGAAAG +ACCCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAGACATGGTGGATGGAATAC +TGGCAGGCCACCTGGATTCCTGAATGGGAATTTGTCAATACCCCCCCTCTAGTAAAACTA +TGGTACCAGTTAGAGAAAGAACCCATACTAGGAGCAGAAACTTTCTATGTAGATGGGGCA +GCTAATAGGGAGACTAAGATAGGAAAAGCAGGGTATGTTACTGACAGAGGAAGACAAAAG +GTTGTTCCTCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATCCATCTAGCT +TTGCAGGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATT +ATTCAAGCACAACCAGACAGCAGTGAATCAGAGATAGTCAATAAAATAATAGAGAAACTA +ATAGAAAAAGATAGAGTCTACCTGTCATGGGTACCAGCGCACAAGGGGATTGGAGGAAAT +GAACAAGTAGACAAATTAGTCAGTAATGGAATCAGAAGAGTGTTATTTTTAGATGGGATA +GATAAGGCTCAAGAAGAACATGAAAAATATCACAGCAATTGGAAAGCAATGGCTAGTGAT +TTTAATCTGCCACCTATTGTAGCAAAGGAAATAGTAGCCAGCTGTGATAAATGTCAACTA +AAAGGGGAAGCTATGCATGGACAGGTAGACTGTAGTCCAGGGATATGGCAAGTAGATTGC +ACACATCTAGAAGGAAAAGTAATTATAGTAGCAGTCCATGTAGCCAGTGGCTATATAGAA +GCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTTCTGCTAAAATTAGCA +GGAAGATGGCCAGTAAAAGTAGTACACACAGATAATGGCCCCAATTTCACCAGCAGTGCA +GTTAAGGCTGCCTGTTGGTGGGCAGATATCCAACAGGAATTTGGGATTCCCTACAATCCC +CAAAGTCAAGGAGTAGTGGAGTCTATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTA +AGAGAGCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTTATTCACAATTTT +AAAAGAAAAGGGGGGATTTGTAGAGAAATGGAAAAGGAAAGAATAATAGACATAATAGCA +ACAGACATACAAACTAAAGAATTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTT +TATTACAGAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGT +GAAGGGGCAGTGGTAATACAGGACAATAATGATATAAAAGTAGTACCAAGAAGAAAAGCA +AAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAG +GATGAGGATTAAAACATGGAACAGTTTAGTAAAGCATCATATGTATGTCTCAAAGAAAGC +TAAAGAGTGGGTCTATAGACATCACTATGAAAGCAGGCATCCAAGAGTAAGTTCAGAAGT +ACACATCCCGCTAGGGGATGCTAGGCTAGTAGTAAAAACTTATTGGGGTCTGCAGACAGG +AGAAAAAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAGAGAAGGTATAG +CACACAAGTAGACCCTGACCTGGCGGACCAACTAATTCATCTGTATTATTTTGACTGTTT +TTCAGAATCTGCCATAAGGAAAGCCATAGTAGGACACGTAGTTAGCCCTAGGTGTAACTA +TCCAACAGGACACAAACAGGTAGGATCTCTACAATACTTGGCACTGAAAGCATTATTAAC +ACCAACAAGGGAAAAGCCACCTTTGCCTAGTGTTAGGAAACTAACAGAGGATAGATGGAA +CAAGCCCCAGAAGACCAAGGGCCGCAGAGGGAACCATACAATGAATGGATGTTAGAACTG +TTAGAAGATCTTAAGGGTGAAGCTGTCAGACATTTTCCAAGGCTGTGGCTTCAAGGATTA +GGACAACATATCTATAACACCTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGA +ACTTTGCAACAACTACTGTTTGTTCATTTCAGAGTTGGGTGCCAGCATAGCAGAATAGGC +ATTGTGCAAAGGAGAAGAGGCAGAAATGGATCCAGTAGATCCTAACCTAGAGCCCTGGAA +TCATCCAGGAAGTCAGCCTAAGACTGCTTGTAACAAGTGTTACTGTAAAAAGTGTTGCTG +GCATTGCCAAATTTGCTTTCTAAAAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCG +GAGACACAGACGCGGAACTCCTCAAGGCAGTAAGGATCATCAAAATCCTATATCAAAGCA +GTAAGTACTAATGACACCTTTAGAAATCTGGGCAATAGTAGCATTAGTAGTAGTGTTTAT +CATAGCAATAGTTGTGTGGACTATAGTAGGCATAGAATATAGGAGATTGTTAAAACAAAA +GAAAATAGACAGGTTAATTGAGAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAG +CGAGGGGGATGCAGAGGAATTATCAACACTTATGGAGGTGGGGGACCATGTTCCTTTGGT +TGATAATAATGTGTAAGGCTACAGAAAACTTGTGGGTCACGGTATACTATGGGGTACCTG +TGTGGAGAGATGCAGAGACCACCCTATTTTGTGCATCAGATGCTAAAGCATATAGTAAAG +AAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAGCCCACAAGAAA +TGAAATTGGAAAATGTGACAGAAGAATTTAACATGTGGAAAAATAACATGGTAGAACAAA +TGCAAACAGATATAATCAGTCTCTGGGACCAAAGCCTAAAGCCATGTGTAAAGTTAACCC +CTCTCTGCGTTACTTTAAATTGTACTGACTTCAGAAACAGTAGCGGTGAAATGAAAAACT +GCTCTTTCAACATGACCACAGAACTAAGAGATAAAAGGAAAATTGTACACTCACTTTTTT +ATAAACTTGATATAGTATCAATAGATAATACTAATAATAGTCAGTATAGACTAATAAATT +GTAATACATCAACCGTGACACAGGCTTGTCCTAAGGTATCCTTTGAGCCAATTCCTATAC +ATTATTGTACCCCAGCTGGTTTTGCGATTCTAAAGTGCAATGAAAAAAATTTTAATGGAA +CAGGGCCATGCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAGGCCAGTAGTAT +CAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAATGATTAGGTCTGAAA +ATATTACAGACAATGGAAAAATCATAATAGTACAGCTTAATGAGTCTGTAGGCATCAATT +GTATCAGACCTGGCAACAATACAAGAAGAAGTATACGTATAGGACCAGGGCAAGCTTTCT +ATGCAACAGGGGATGTAATAGGGGACATAAGAAAAGCATATTGTGAGGTTAACAAAACAG +CATGGAATAGCGCTTTACGAAAGATAAGTATGCAATTAAAAAATTACTTTAATAATAAAA +CAATAATCTTTAAGGAATCCTCAGGAGGGGATTTAGAAGTTACAACACATAGTTTCAACT +GTGGAGGAGAATTTTTCTATTGCTATACAACAGCCCTGTTCAATAGCACTTGGGACGGAA +ATGAAACTGACACTGGTACAAATAGCACACAGAACAATGAAACTATAACTCTACAATGCA +AAATAAAGCAAATTATAAGAATGTGGCAGAGAGTAGGACAAGCAATGTATGCCCCTCCTA +TCCCAGGAAATATAAATTGTACATCAAACATTACAGGACTACTACTAACAAGAGATGGTG +GAAGTAATAGCACCAATGAGACTTTCAGACCTATAGGAGGAGATATGAGGGACAATTGGA +GAAGTGAACTATATAAGTATAAAGTAGTACAAATTGAACCAATAGGCATAGCACCTACCA +AGGCAAAGAGAAGGGTGGTGGAGAGAGAAAAAAGAGCAATTGGAATAGGAGCTGCCTTCA +TTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTAC +AGGCCAGACAATTATTGTCTGGCATAGTGCAACAGCAAAGCAATTTGCTGATGGCTATAG +AGGCTCAGCAGCATCTGCTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAG +TCCTGGCTGTGGAAAGGTACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTG +GAAGACTCATCTGCACCACCAATGTGCCCTGGAACTCTAGTTGGAGTAATAAAACTTATG +ATGAGATATGGGATAACATGACCTGGATGCAATGGGACAAGGAAATTATCAATTACACAA +ACAAAATATATGATCTAATTGAACAATCGCAAAAACAGCAGGAAAAGAATGAACAAGATT +TATTATCATTGGATAAGTGGACAAGCCTGTGGAGTTGGTTTAACATAACAAATTGGTTAT +GGTATATAAAAATATTTATAATAATAGTAGGAGGCTTAATAGGCCTAAGAATAGTTTTTG +CTGTGCTTTCTATAATAAATAGAGCCAGGCAGGGATACTCACCCTTGTCGTTGCAGACCC +TTATCCCACACCCAGAGGGACCAGACAGGCCCAGAGGAATCGAAGAAGAAGGTGGAGAGC +AAGGCAGAACCAGATCGATTCGCTTAGTGAGCGGATTCTTAACACTTGTCTGGGACGACC +TGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTCATCTCGATTGCAGCGA +GGACTGTGGAACTTCTGGGACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGGGCC +TCAAATATCTGGGGAATCTTCTGGAATATTGGGGTCAGGAGCTAAAGAGTAGTGCTATTA +ATCTGATAGATAGACTAGCAATAGCAGTAGCTGAGTGGACAGATAGGGTTTTAGAAATAG +TACAAAGATTTGGTAGAGCTATTCGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAA +AGGCTTTGCAATAACATGGGGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGACTCAG +ATTAGGGAAAGAATGAGACGAGCTCCTGCTCCAGCAGCAAGAGGAGTAGGTCCAGTATCT +CAAGATTTGGATAAGCATGGAGCAGTCACAAGCAGTAACACAGCAGCAACTAATGCTGAT +TGTGCCTGGCTGGAGGCGCAAGAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCGCAGGTA +CCTTTGAGACCGATGACATTTAAGGGAGCTGTTGATCTCAGCCACTTTTTAAAAGAAAAG +GGGGGACTGGATGGGCTAATTTACTCCAAGAAAAGACAAGAAATCCTTGATCTGTGGGTC +TATCACACACAAGGCTACTTCCCTGATTGGCAGAATTATACCCCAGGGCCAGGGACTAGA +TTCCCACTAACATTTGGGTGGTGCTACAAGCTAGTACCAGTTGACCCAGCTGATGTAGAA +GAGGCCACAGAGGGAGAGAACAACAGCCTACTACATCCTATATGCCAACACGGAATGGAG +GATGAAGAAAGAGAAGTGTTAATGTGGAAGTTTGACAGTCGCCTGGCTCTAACACACAGA +GCCCGAGAGCTGCATCCGGAGTTCTACAAAGACTGCTGACACAGACTGCTGACATGAAGT +TGCTGACAGGGACTTTCCGCAGGGACTTTCCAGGGGGGTGTGGTTTGGGCGGAGTTGGGG +AGTGGCTAACCCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTC +TGGTTAGACCAGATCG +>A6.UA.2012.0.DEMA112UA040.KY658682 KY658682 +CCGTCGGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGGCGGTGTAAAA +ATCTCTAGCAGTGGCGCCCGAACAGGGACCCGAAAGCGAAAGTTCCAGAGAAGTTCTCTC +GACGCAGGACTCGGCTTGCTGAAGTGCGCACAGCAAGAGGCGAGAGCGGCGACTGGTGAG +TACGCCTAAAGATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCA +GTATTAAGCGGGGGAAAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAG +AAACAATATAGAATAAAACACCTAGTATGGGCAAGCAGGGAGCTGGACAGATTCGCGCTT +AACCCTAGCCTTTTAGAAACATCAGAAGGATGTCAACAAATACTAGAAAAACTCCAACCA +GCTCTCAATACAGGAACAGAAGAGATTAAATCATTATATAATACAGTAGCAACCCTCTAT +TGTGTACATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGATAAAATAGAGGAA +ATACAAAATAAGAGCAAGCAAAAGACCCAACAGGCAGCAGCTGGCGCAGGAAGCAGCAGT +AAGGTCAGTCAAAATTACCCCATAGTGCAAAATGCACAAGGGCAAATGGTACACCAGTCC +ATTTCACCTAGGACTTTGAATGCATGGGTGAAAGTAATAGAAGAAAAGGCTTTCAGCCCA +GAAGTAATACCCATGTTTTCAGCATTGTCAGAAGGAGCCACCCCACAAGATTTAAACATG +ATGCTGAACATAGTGGGGGGACACCAAGCAGCTATGCAAATGTTAAAAGATACCATCAAT +GAGGAAGCTGCTGAATGGGATAGGTTACATCCAGCACAGGCAGGGCCTTTTCCAGCAGGG +CAGATGAGAGAACCTAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAA +ATAGGATGGATGACAAGTAACCCACCTATCCCAGTGGGAGACATCTATAAAAGATGGATA +ATCCTAGGATTAAATAAGATAGTAAGAATGTATAGCCCTACTAGCATCTTAGACATCAGA +CAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTCTTTAAAACTCTTAGAGCT +GAGCAAGCTACACAGGAGGTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCC +AATCCAGATTGTAAAACCATTTTAAGAGCATTAGGACCAGGGGCTACATTAGAAGAAATG +ATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGGGTTTTGGCTGAGGCA +ATGAGTCAAGTACAAAATACAAGCATAATGATGCAAAAAAGTAATTTTAGAGGCCCAAAA +AGAATTAAGTGTTTCAACTGTGGTAAAGAAGGACACCTAGCCAGAAATTGCAGGGCCCCT +AGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAG +AGACAGGCTAATTTTTTAGGGAGAATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTT +CCTCAGAGCAGACCAGAGCCATCAGCCCCACCAGCAGAGGAGTTTGGGATGGGGGAAGAG +ATGACCCCCTCCCTGAGACAGGAACAGAGAGACAGGGAACAACATCCTCCTTCAATTTCC +CTCAAATCACTCTTTGGCAACGACCCATTGTCACAGTAAGAATAGAAGGACAGCTAAAAG +AAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGGAA +AATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTAAGACAGTATGATC +AAATAGTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTATTAGTAGGACCTACCC +CTGTCAACATAATTGGAAGAAATATGTTGACTCAGATTGGTTGTACTTTAAATTTTCCAA +TAAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTTA +AACAATGGCCATTATCAGAAGAGAAAATAAAAGCATTAACAGACATTTGTAATGAAATGG +AAAAAGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTG +CTATAAGGAAAAAGGACAGCACTAAGTGGAGAAAATTAGTAGATTTCAGGGAGCTCAATA +AAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCCCATCCAGCGGGCTTAAAAA +AGAAAAAATCAGTAACAGTACTAGATGTAGGGGATGCATATTTTTCAGTTCCTTTAGATG +AAAATTTCAGAAAGTATACTGCATTCACTATACCAAGTATAAACAATGAGACACCAGGGA +TCAGATATCAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAGT +GTAGCATGACAAAAATCTTAGAGCCCTTTAGATTAAAAAATCCAGAAATAGTTATCTATC +AATACATGGATGACTTGTATGTAGGCTCTGATTTAGAAATAGGGCAACATAGAACAAAAA +TAGAGGAGTTGAGAGCTCATCTATTGAGTTGGGGATTTACTACACCAGACAAAAAGCATC +AGAAAGAACCCCCATTCCTGTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTTC +AGCCTATAGTGCTGCCAGATAAAGACAGCTGGACTGTCAATGACATACAGAAACTAGTGG +GAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAATTGTGTAAAC +TCCTCAGGGGAGCCAAAGCACTGACAGATATAGTGACACTGACAGCGGAAGCAGAATTAG +AATTGGCAGAGAACAGAGAGATTCTAAAAGAACCGGTGCATGGAGTATATTATGATCCAT +CAAAAGATTTAGTAGCAGACATACAGAAACAAGGACAAGGTCAATGGACATATCAAATCT +ATCAGGAGCCATTTAAGAATCTAAAAACAGGAAAATATGCAAAAAAGGGGTCTGCTCATA +CTAATGATGTAAGACAATTAACAGCAGTGGTGCAAAAAGTGGCCACAGAAAGTATAGTAA +TATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGT +GGATGGAGTACTGGCAGGCCACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTC +TAGTAAAACTATGGTACCAGTTGGAGAAAGAACCCATAGTAGGAGCAGAGACTTTCTATG +TAGATGGGGCAGCTAATAGGGAGACTAAAATAGGAAAAGCAGGGTATGTTACTGACAGAG +GAAGACAAAAGGTTGTTCCTCTAAATGAGACAACAAATCAAAAGACTGAATTACATGCAA +TCTATCTAGCTTTACAGGATTCAGGATTAGAAGTAAATATAGTAACAGACTCACAATATG +CATTAGGAATTATTCAGGCACAACCAGACAGAAGTGAATCAGAGATAGTTAATCAAATAA +TAGAGAAGCTAATAGAAAAAGAAAGAGTCTACCTGTCATGGGTACCAGCACACAAAGGGA +TTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAGGGTGTTATTTC +TAGAAGGGATAGATAAGGCTCAAGAAGATCATGAAAAATATCACAGCAATTGGAAAGCAA +TGGCTAGTGATTTTAATCTGCCACCTATAGTAGCAAAGGAAATAGTAGCCAGCTGTGATA +AATGTCAACTAAAAGGGGAAGCTATGCATGGACAGGTAGACTGTAGTCCAGGAATATGGC +AATTAGATTGCACACATCTAGAGGGAAAAGTAATCATAGTAGCAGTCCATGTAGCCAGTG +GCTATATAGAAGCAGAGGTTATCCCAGCAGAAACAGGACAGGAGACAGCATATTTTCTGC +TAAAATTAGCAGGCAGATGGCCAGTAAAAGTAGTACACACAGATAATGGCCCCAATTTCA +CCAGCAGCGCAGTTAAGGCTGCCTGTTGGTGGGCAGATATCCAACAGGAATTTGGGATTC +CCTACAATCCCCAAAGTCAAGGAGTAGTGGAGTCTATGAATAAGGAATTAAAGAAAATCA +TAGGGCAGGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAGTTCAAATGGCAGTATTCA +TTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAG +ACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAA +ATTTTCGGGTTTATTACAGAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTAC +TCTGGAAAGGTGAAGGGGCAGTGGTAATACAGGACAATAACGATATAAAAGTAGTACCAA +GAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGG +CAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCACATGTATGTC +TCAAAGAAAGCTAGAAAGTGGTTTTATAGACATCATTATGAAAGCAGGCATCCAAAAGTA +AGTTCAGAAGTACACATCCCACTAGGGGATGCTTGTCTAGTAGTAACAACATATTGGGGT +CTGCATACAGGAGAAAAAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAA +AGAAGGTATAGCACACAAATAGACCCTGACCTGGCGGACCAACTAATTCATCTGTATTAT +TTTGAATGTTTTTCAGAATCTGCCATAAGGGGAGCCATATTAGGACAAATAGTTAGCCCT +AGGTGTAACTACTCAGCAGGACACAACAAGGTAGGATCTCTACAATACTTGGCACTGAAA +GCATTAGTTACACCAACAAGGGAAAGGCCACCTTTGCCTAGTGTTAGGAAACTAACAGAG +GATAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAACCATACAATGAATGGA +TGTTAGAACTGTTAGAAGATATTAAGCATGAAGCTGTCAGACATTTTCCAAGGCCGTGGC +TTCATGGATTAGGACAACATATCTATAACACCTATGGGGATACTTGGGAAGGGGTTGAAG +CCATAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGCCAACATA +GCAGAATAGGCATTGTGCAAAGGAGAAGAGGCAGGAATGGATCCAGTAGATCCTAACCTA +GAGCCCTGGAAGCACCCGGGAAGCCAGCCTAAAACTGCTTGTAGCAATTGTTACTGTAAA +AGATGTTGCTGGCATTGCCAAATTTGCTTTCTAAAAAAAGGCTTAGGCATTTCCTATGGC +AGGAAGAAGCGGAGACACAGACGCGGAACTCCTCACGGCAGTAAGGATCATCAAAATCCT +ATATCAAAGCAGTAAGTACTAAATGTAATGACACCTTTAGAAATCTATGCAATAATAGCA +TTAGTAGTAGTATTTGTTATAGCAATAGTTGTGTGGACTATAGTAGGCTTAGAATATAGG +AAATTACTAAAACAAAGAAAAATAAACAGGTTAATTGAAAGAATAAGAGAAAGAGCAGAA +GACAGTGGCAATGAAAGCGAGGGGGATGCAGAGGAATTATCAACACTTATGGAGGTGGGG +GACTATGCTCTTTTGGATGATAATAATGTGTAAGGCTGCAAACTTGTGGGTCACAGTATA +CTATGGGGTACCTGTGTGGAGAGATGCAGAGACCACCCTATTTTGTGCCTCAGATGCCAA +GGCTTATGATAAAGAAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCC +TAACCCACAAGAAATAATTTTAGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAA +CATGGTAGAACAAATGCACACAGATATAATCAGTCTCTGGGACCAAAGTCTAAAGCCATG +TGTACAACTAACCCCTCTCTGTGTTACTTTAAATTGTACTGAACCCACTATCGACAGTAA +CAATAACAGCACTAACACCAGCTAYAATAGAAAGATTGAAGAAATGAGAAACTGCTCTTT +CAACATAACCACAGAACTAAATGATAAACAGAAAAAAGTACATTCACTTTTTTATAAACT +TGATATAGTACCAACTGATAATGGTAGTAGTCAGTATAGACTAATAAATTGTAATACATC +AACCATGACACAGGCCTGTCCTAAGGTATCCTTTGAGCCAATTCCTATATATTATTGTAC +CCCAGCTGGTTTTGCGATTATAAAATGCAATGATGCAAATTTTACAGGAATAGGGCCATG +CAGGAATGTCAGCACAGTACAATGTACACATGGAATCAAGCCAGTAGTATCAACTCAATT +GCTGTTAAATGGTAGTCTAGCTGAGAAAGAGATAATGATTAGATCTGAGAATATCACAGA +CAATACTAAAAACATAATAGTACAGCTTACTAAGGCTGTAAACATCACTTGCTCCAGACC +TGGCAACAATACAAGAACAAGTATACCTATAGGACCAGGACGAGCCTGGTTTGCAACAGG +TGATGTAACAGGGGATCCAAGGAAAGCACATTGTAATGTCAGCAAAGCAGATTGGACTAG +CACTTTAAAAAATATAAGTATACAATTAAGAAAACACTTTAACAAAACAATAATCTTTCA +GAATTCCTCAGGAGGGGATTTAGAAGTTACAACACATAGTTTCAATTGTGGGGGAGAATT +TTTCTATTGCAATACAACAGAACTGTTCAATAGCACTTGGAATGGCACTGACACAAACAG +CACAGAGGACAATAATGTAAATATAACTATACCATGCAGAATAAAGCAAATTATAAATAT +GTGGCAGAGAGTAGGACGAGCAATGTATGCCCCTCCTATCAGAGGAAATATAACTTGTGA +ATCAAACATTACAGGACTACTACTAACAAGAGATGGTGGTAAAGAGAAAAATGACAACGA +AACCTTTAGACCTATAGGAGGAAATATGAAGGACAATTGGAGAAGTGAACTATATAAGTA +TAAAGTAGTAGAAATTAACCCAATAGGAGTAGCACCTACCCCGGCAAAGAGAAGAGTGGT +GGAGAGAGAAAAAAGAGCAGTTAGCCTAGGAGTTGCCTTCCTTGGGTTCTTAGGAGCAGC +AGGAAGTACTATGGGCGCGGCGTCACTGACGCTGACGGTACAGGCCAGACAACTATTGTC +TGGCATAGTACAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCTCAGCAGCAATTGCT +GAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATA +CCTAAGAGATCAGCAACTCCTAGGAATTTGGGGTTGCTCTGGAAAACTCATCTGCACCAC +TACTGTGCCCTGGAACTCTAGTTGGAGTAATAGATCTCAGGATGATATATGGAATAACAT +GACCTGGATGCAATGGGACAGGGAAGTTAGCAATTACACAGAATTAATATATAAGCTAAT +TGAAGAATCGCAAAACCAGCAGGAAAAGAATGAACAAGATTTATTGGCATTGGATGAGTG +GGCAAGTCTGTGGAATTGGTTTAAAATAACACAGTGGTTATGGTATATAAAAATATTTAT +AATGATAGTAGGAGGCTTAATAGGATTAAGGATAGTTTTTGCTGTGCTTTCTATAGTAAA +TAGAGTCAGGCAGGGATACTCACCCTTGTCATTGCAGACCCCAAACCCACACCCAGAGGG +ACCAGACAGGCCCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGGCAGAGACAGATCGAT +TCGATTAGTGAGCGGATTCTTAGCACTTGTCTGGGACGACCTGCGGAGCCTGTGTCTTTT +CAGCTACCACCGATTGAGAGACTTCATCTTGATTGCAACGAGGACTGTGGAACTTCTGGG +ACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGGGCCTCAAATATCTGGGGAATCT +TCTGGGATATTGGGGTCAGGAGCTAAAGAGTAGTGCTATAAGTCTGATAGATACCATAGC +AATAGTAGTAGCTGGGTGGACAGATAGGGTTTTAGAACTAGGACAGAGAATTTGTAGAGC +TATTTGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAAGAGCTTTGCAATAACATGG +GGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGATTAGGGACAGAATAAGAC +GAACTCCTGCTCCAGCAGCACCAGGAGTAGGACCAGTATCTCAAGATTTGGATAAGCATG +GAGCAGTCACAAGCAGTAATACAGCAGCTACTAATGCTGATTGCGCATGGCTGGAAGCGC +AAGAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCGCAGGTACCTTTGAGACCAATGACAT +ATAAGGGAGCTTTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAA +TTTACTCCCAGAAAAGAAGAGAAATCCTTGATCTATGGGTCTATCACACACAAGGCTACT +TCCCTGATTGGCAGAATTACACCCCAGGGCCAGGGATTAGATACCCACTAACATTTGGGT +GGTGCTACAAGCTAGTACCAGTTGACCAAGATGTGGTAGAAGAGGCCACAGTGGGAGAGA +ACAACAGCCTATTACACCCTATATGCCAACATGGAATGGATGATGAAGAGAAAGAAGTGT +TAATGTGGAAGTTTGACAGTCGCCTGGCTCTAAAACACAGAGCCCGAGAGCTGCATCCGG +AGTTCTACACAGACTGCTGACATGAGATTGCTGACAGGGACTTTCCGCGGGGACTTGGGA +CTTTCCAGGGGAGGTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAACCCTCAGATGCTGCA +TATAAGCAGCGGCTTTTCGCCTGTACTGGGTCTCTCTGGTTAGACCAGATTAGAGCCTGG +GAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTG +CTTGAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCA +CTCTAGGCGGTGTAAAAATCTCTAGC +>A6.RU.2016.0.RU_ERS_1102_2016.MT369982 MT369982 +TGCTGAGGTGCACRCAGCAAGAGGCGAGAGCGGCGGCTGGTGAGTACGCCTGATTTTTGA +CTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAA +TTAGATAAATGGGAAAAAATACGGTTAAGGCCAGGGGGAAGGAAACAATATAGAATAAAA +CACCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTTGCGATTAACCCTGGCCTTTTAGAA +ACAGCAGAAGGATGTCAACAAATACTAGAACAGTTACAACCAAGTATCAAGACAGGATCA +GAAGAAATTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGATA +GAAATAAAAGACACCAAGGAAGCTTTAGATACAATAGAGGAATTGCAAAATAAGAACAAG +CAAAAGACCCAACAGGCAGAGGCTGGCACAGGAAGCAGCAGCAAGGTCAGTCACAATTAC +CCCATAGTGCAAAATGCACAAGGGCAAATGATGCACCAGGCCATGTCACCTAGGACTTTR +AATGCATGGGTAAAAGTAATAGAAGAAAAGGCTTTTAGCCCAGAAGTAATACCCATGTTC +TCAGCATTATCAGAGGGAGCCACCCCACAAGATTTAAACATGATGCTGAACATAGTGGGG +GGACATCAGGCAGCTATGCAAATGTTAAAAGATACCATCAATGAGGAAGCTGCTGAATGG +GATAGGTTACATCCAGCACAAGCAGGGCCTTTTCCACCAGGGCAAATGAGAGAACCAAGG +GGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAGCAAATAGGATGGATGACAAGC +AACCCACCTATTCCAGTGGGAGACATCTATAAAAGATGGATAATCCTGGGATTAAATAAA +ATAGTAAGAATGTATAGCCCTGTTAGCATTTTAGACATAAGACAAGGGCCAAAAGAACCC +TTCAGAGACTATGTAGATAGGTTCTTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGAG +GTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCAAATCCAGATTGTAAAAAT +ATTTTAAGAGCATTAGGACCAGGGGCTACATTAGAAGAAATGATGACAGCATGCCAGGGA +GTGGGAGGACCCGGCCATAAAGCAAGGGTTTTGGCYGAGGCAATGAGTCAAGTACAARGT +GCAAATATAATGATGCAGAAAAGTAATTTTAGGGGCCCAAAAAGAATTAAGTGTTTCAAC +TGTGGCAAAGAAGGACACCTAGCTAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGG +AAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTA +GGGAGAATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTTCCTCAGAGCAGACCAGTA +CCATCAGCCCCACCAGCAGAAGACTTCGGGATAGGGGAAGAGATAACCCCCTCCCTGAAA +CAGGAACAGAAAGACAGGGAACAGTGTCCTCCTTCAGTTTCCCTCAAATCACTCTTTGGC +AACGACCCMTTGTCACAGTAAGAATAGGAGGACAGCTAAAAGAAGCTCTATTAGATACAG +GAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGGAAAATGGAAGCCAAAAATGA +TAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACTTATAGAAATTT +GTGGAAAAAAGGCTATAGGTACGGTATTAATAGGACCTACCCCTGTCAACATAATTGGAA +GAAATATGTTGACTCAGATTGGTTGTACTTTAAATYTKCCAATAAGTCCTATTGAAACTG +TACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTATCAG +AAGAAAAAATAAAAGCATTAATAGACATTTGTAGTGAGATGGAAAAGGAAGGAAAAATTT +CAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGTTATAAAGAAAAAAGATA +GCACTAAGTGGAGGAAATTAGTAGATTTCAGGGAGCTCAATAAAAGAACTCAGGACTTTT +GGGAAATTCAATTAGGAATACCCCATCCAGCGGGTTTAAAAAAGAAAAAATCAGTAACAG +TACTGGATGTAGGGGATGCATATTTTTCAGTTCCTTTAGATGAAAACTTCAGAAAGTATA +CTGCATTCACTATACCAAGTACAAACAATGAGACACCAGGGATCAGATATCAGTACAATG +TACTCCCACAGGGATGGAAAGGATCACCATCAATATTCCAGGCTAGCATGACAAAAATCT +TAGAGCCCTTTAGATTAAAAAATCCAAACATAGTTATCTATCAATACATGGATGACTTGT +ATGTAGGCTCTGATTTAGAAATAGGTCAGCATAGGACAAAAATAGAGGAGTTAAGAGCTC +ATCTATTGAGCTGGGGATTTACTACACCAGACAAAAAGCATCAGAAAGAACCTCCATTTC +TTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAGCCTATAGTGCTACCAG +ATAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTAGGAAAACTAAATTGGGCAA +GTCAGATTTATCCAGGGATTAAAGTAAARCAATTATGTAAACTCCTCAGGGGAGCCAAAG +CACTGACAGATATAGTGACACTGACTAAGGAAGCAGAATTAGAATTGGAAGAGAACAGAG +AGATTCTAAAAGAACCTGTGCATGGAGTATATTATGATCCATCAAAAGATTTAGTAGCAG +AAATACAGAAACAAGGARAAGACCAATGGACATATCAAATTTATCAGGAGCCATTTAAAA +ATCTGAAAACAGGAAAATATGCAAAAAAGGGGTCTGCTCACACKAATGATGTAAAACAAT +TGACAGCAGTGGTGCAAAAAGTGGCCACAGAAAGCATAGTAATATGGGGAAAGACTCCTA +AATTTAGATTACCCATACAAAAAGAAACATGGGAAGCATGGTGGATGGAGTACTGGCAGG +CTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTCTAGTAAAGCTATGGTACC +AGTTGGAGAAAGAACCCATAATAGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTAACA +GGGAGACTAAGATAGGAAAAGCAGGGTATGTTACTGACAGAGGAAGACAAAAGGTTGTTC +CTCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATCYATCTAGCTTTGCAGG +ATTCAGGACCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATTATTCAGG +CACAACCAGACAGAAGTGAGTCAGAGATAGTCAATAAAATAATAGAGAAACTAATAGAAA +AAGAAAGAGTCTACCTGTCATGGGTACCAGCRCACAAGGGGATTGGAGGAAATGAACAAG +TAGATAAATTAGTCAGTAATGGAATCAGGAGGGTGTTATTTTTAGAAGGGATAGACAAGG +CTCAAGAAGAACATGAAAAATATCACAGCAATTGGAAAGCAATGGCTAGTGATTTCAATC +TGCCACCTGTAGTAGCAAAGGAGATAGTAGCCAGCTGTGATAAATGCCAATTAAAAGGAG +AAGCTATGCATGGACAGGTAGACTGTAGTCCAGGGATATGGCAATTAGATTGCACACATC +TAGAAGGAAAAGTAATCATAGTAGCAGTCCATGTAGCCAGTGGCTATATAGAAGCAGAAG +TTATTCCAGCAGAAACAGGACAGGAGACAGCATACTTCCTGCTAAAACTAGCAGGAAGAT +GGCCAGTGAAARTAGTACACACAGATAATGGCCCAAATTTCACCAGCAGTGCAGTTAAGG +CTGCCTGTTGGTGGGCAAATATCCAACAGGAATTTGGAATTCCCTACAATCCCCAAAGTC +AAGGAGTAGTGGARTCTATGAATAAGGAATTAAAGAAAATCATAGGGCAAGTAAGAGAGC +AAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAA +AAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGRATAATAGACATAATAGCAACAGACA +TACAGACCAAAGAATTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACA +GAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGG +CAGTGGTAATACAGGACAATAACGATATAAAAGTAATACCAAGAAGAAAGGCAAAGATCA +TTAGGGATTATGGAAAACAGATGGCAGGGGATGATTGTGTGGCAAGTAGACAGGATGAGG +ATTAGAACATGGAATAGTATAGTAAAACATCATATGTATATCTCAAAGAAAGCTAGAGGG +TGGGTTTATAGACATCACTATGAAAGCAGAAATCCAAGAGTAAGTTCAGAAGTACACATC +CCACTAGGGGATGCTAGGCTAGTAGTAAAAACATATTGGGGTCTGCATACAGGAGAAGAA +GACTGGCACTTGGGTCACGGGGTCTCCATAGAATGGAGACAGGAAAGGTATAGCACACAA +GTAGACCCTGACCTGGCGGACCAACTAATTCATCTGTATTATTTTGACTGTTTTTCAGAA +TCTGCCATAAGGAARGCCATAGTAGGACACGTAGTTAGCCCTAGGTGTAACTATCCATCA +GGACACAACAAGGTAGGATCTCTACAATACTTGGCACTGAAAGCAATAGTACCACAAACA +AGGGAAAGGCCACCTTTGCCTAGTGTTAGGAAACTAACAGAGGATAGATGGAACAAGCCC +CAGAAGACCAGGGGCCGCAGAGGGAACCATACAATGAATGGATGTTAGAACTGTTAGAAG +ATCTTAAGAATGAAGCTGTCAGACATTTTCCAAGACYGTGGCTCCAKGAWTTAGGACAAC +ACATTTATAACACCTATGGGGATACTTGGACAGGGGTTGAAGCTATAATAAGAAYTTTGC +AACAACTATTGTTTGTTCATTTCAGAATTGGGTGCCAMCATAGCAGAATAGGCATTGTGC +AAAGGAGAAGAGTCAGGAATGGATCCAGTAGATCCTAACCTAGAGCCCTGGRADCATCCG +GGAAGTCAGCCTAAAACTGCTTGTAGCAATTGTTAYTGTAAAAAATGTTGCTGGCATTGT +CAAGTGTGCTTCTTAAAMAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGAAGC +AGACGCGGAACTCCTCRCAGCARTAAGGAYCATCAAAWTMTTATAYCAAAGCAGTAAGTA +CTAAATAAATGTAATGAYACCTTTAGAAATCTATGCAATAGTAGCATTAGTAGTAGTGGC +TATCATAGCAATAGTTGTGTGGACTATAGTAGGTATAGAATATAGGAAATTGTTAAAACA +AAGAAAAATAGACAGGTTAATTGAGAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGA +AAGCGAGGGGGATGAAGAAGAATTATCAACAMTTATGGATAGGGGGAACCTTGCTCTTTT +GGATATTAATAATGTGTAAGGCTACAGAAAACTTGTGGGTCACGGTATACTATGGGGTAC +CTGTGTGGAGAGATGCAGAGACCACCCTATTTTGTGCATCAGATGCTAAAGCATATGATA +AAGAAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAACCCACAAG +AAATAGATTTGGAAAATGTGACAGAAAACTTTAACATGTGGAAAAATAACATGGTAGAAC +AAATGCAAACAGATATAATCAGTCTCTGGGACCAAAGCCTAAAGCCATGTGTAARKTTRA +CCCCTCTCTGTGTYACTTTAAATTGTRYKGAACCCAACAGCACCARCTATAACAACAGTA +GCACTAATAGCAGCARCAGTGATAATTTGTATAAAGAAATGAAAAACTGCTCTTTCAACA +TGACCACAGAAGTAAGAGATAAAAGGAAAACTGTATATTCACTTTTTTATAAACTTGATA +TAGTATCAACTGATAGTAATAGTAGTAGTGGACAGTATAGACTAATAAATTGCAATACAT +CAACCATGACACAGGCATGTCCTAAGGTAACCTTTGAGCCAATTCCTATACATTATTGTG +CCCCAGCTGGTTTTGCGATTCTAAAGTGCAAGGATCCAAAATTTAATGGAACAGGGCCAT +GCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGYAGTATCAACTCAAC +TGCTGCTAAATGGCAGTCTAGCAGAGGATGTAATGATTAGATCTGAAAATATCACAGACA +ATAGCAAAATCATAATAGTACAGCTTAATGAGCCTGTAAACATCACTTGTATCAGACCTG +GCAACAATACAAGAACAAGTGTACGTATAGGACCAGGACAAACCTTCTATGCAACAGGTR +AGGTAATAGGGGACATAAGAAAAGCACATTGTGAGGTCAACAAAACAGAATGGAAKAGTG +CTCTAAGMAAGATAAGTACACAATTAAGAAAATATTTTAATAACAAAACAATAGTCTTTC +AGARMTCCTCAGGGGGGGATTTAGAAATTACAACACATAGTTTCAATTGTGGAGGAGAAT +TTTTCTATTGCAATACAACAGCCCTGTTCAATAGCACTTGGGACAAYAATAATGACACTR +TCACAAATGDCACARAKGACAATRAAAATATAACTACTCTGCCATGCAGAATAAAGCAAA +TTATAAAWATGTGGCAGAGAGTAGGACAAGCAATGTATGCCCCTCCTATCCCAGGAAGTA +TAAGGTGTGARTCAAACATTACAGGATTACTACTAAYAAGAGATGGTGGAGATARAAATA +GTAGCAATGAGACCTTCAGACCTATAGGAGGAGACATGAGGGACAATTGGAGAAGTGAAC +TATATAAGTATAAAGTAGTAAAAATTGAACCAATAGGAGTAGCACCTACCAAGGCAAAGA +GAAGAGTGGTGGAGAGAGAAAAAAGAGCAATTGGACTGGGAGCTGCCTTCCTTGGGTTCY +TAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGAC +AATTGTTGTCTGGCATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCTCAGC +AGCATCTGCTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTG +TGGAAACATACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTGGAAAACTCA +TCTGCACCACTAATGTGCCCTGGAACTCTAGTTGGAGTAACAAATCTCTGAATGAGATAT +GGGAHAACATGACCTGGATGCAATGGGACAAGGAAGTTATCAACTACACAGGCATAATAT +ATGATCTAATTGAAAAATCGCAAAACCAGCAGGAAAAGAATGAACAAGAGTTATTGGCAT +TGGATAAGTGGGCAAGTCTGTGGAATTGGTTTGACATATCAAATTGGTTATGGTATATAA +AAATATTTATAATAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTGCTGTGCTTT +CTATAATAAATAGAGTCAGGCAGGGATACTCACCCTTGTCATTGCAGATCCCTACCCCAC +ACCCAGAGGAACCAGACAGGCCCGGAAGAATCAACGAAGAAGGTGGAAAGCAAGGCAGAG +ACAGATCAGTGCGATTAGTGAGCGGATTCTTAGCACTTTTCTGGGACGATCTGAGGAGCC +TGTGCCTCTTCTGCTACCACCTATTGAGAGACTTCATCTTGGTTGTAGCGAGGACGGTGG +AACTTCTGGGACGCAACAGCCTCAAGGGACTGAGACTGGGGTGGGAGGGCCTCAAGTATC +TGGGGAATCTCCTGGAATATTGGGGTCAGGAACTAAAGAGTAGTGCTATCAATCTCATAG +ATACCATAGCAATAGTAGTAGCTGGATGGACAGATAGGGTTMTAGAATTAGGACAAAGAD +TTTGTAGAGCTATTTGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAAGAGCTTTGC +AATAAAATGGGGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGGTAAGGGAA +AGAATAAGACGAGCTCCTGCTCCAGCAGCAATAGGAGTAGGACCAGTATCACAGGATTTA +GATAAGCATGGAGCAGTTACAAGCAGTAATACAGCAGCTACTAATGCTGATTGTGCCTGG +CTGGARGCACAAGAGGACGAGGAAGTAGGCTTTCCAGTCAGGCCACAGGTACCTYTGAGA +CCAATGACATATAAGGGAGCATTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTG +GATGGGCTAATTTACTCCAAGAAAAGACAAGAAATCCTTGATCTGTGGGTCTATCACACA +CAAGGCTACTTCCCTGATTGGCAGAATTATACCCCAGGGCCAGGGATTAGATACCCACTA +ACCTTTGGGTGGTGCTACAAGCTAGTACCCGTTGACCCAGAGGWAGTAGAAGAGRCCACA +GAGGGAGAGAACAACAGCCTATTACACCCTATATGCCAACACGGAATGGATGATGAGGAA +AGAGAAGTGTTAATGTGGAAGTTTGACAGTCACCTGGCTCTAACACACARAGCCCGAGAG +MTACATCCGGAGTACTACAAAGACTGCTGACACAGACTGCTGACATGAAGTTGCTGACAG +GGACTTTCTACGGGACTTTCCGGGGAGGTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAAC +CCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTCTGGTTGGACC +AGATCG +>A6.RU.2006.0.RU_915_1035.JQ292897 JQ292897 +CTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCA +CTCTAGGCGGTGTAAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGT +TCCAGAGAAGTTCTCTCGACGCAGGGCTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGA +GAGCGGCGACTGGTGAGTACGCCTAAAGATTTTTGACTAGCGGAGGCTAGAAGGAGAGAG +ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGG +TTAAGGCCAGGGGGAAGGAAAAAATATAGAATAAAACACCTAGTATGGGCAAGCAGGGAG +TTGGAAAGATTCGCGCTTAACCCCAGCCTTTTAGAAACATCAGAAGGATGTCAACAACTA +CTGGAACAGTTACAATCAACTCTCAAGACAGGATCAGAAGAACTTAAATCATTATATAAT +ACAATAGCAACCCTCTATTGTGTACATCAACGGATAGAGATAAAAGACACCAAGGAAGCT +TTAGATAAAATAGAGGAAATACAAAATAAGAGCAGGCAAAAGACCCAACAGGCAGCAACT +GGCACAGGAAGCAGCAGCAAGGTCAGTCAAAATTACCCCATAGTGCAAAATGCACAAGGG +CAAATGGTACACCAGTCCATATCACCTAGGACTTTGAATGCATGGGTGAAAGTAATAGAA +GAAAAAGCTTTYAGCCCAGAAGTAATACCCATGTTTTCAGCATTGTCAGAGGGAGCCACC +CCACAAGATTTAAACATGATGCTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAATG +TTGAAAGATACCATCAATGAGGAAGCTGCTGAATGGGATAGGTTACATCCAGCACAGGCA +GGGCCTTTTCCACCAGGGCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACT +AGTACCCTTCAAGAACAAATAGGATGGATGACAAGCAACCCACCTATCCCAGTGGGAGAC +ATCTATAAAAGATGGATAATCCTAGGATTAAATAAGATAGTAAGAATGTATAGCCCTGTT +AGCATTTTAGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTC +TTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGATGTAAAGAACTGGATGACAGATACC +CTGCTGGTCCAAAATGCAAATCCAGATTGTAAAACCATTTTAAGAGCATTAGGACCAGGG +GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAAGCA +AGGGTTTTGGCCGAGGCAATGAGTCAAGTACAAAATGCAAACATAATGATGCAGAAAAGT +AATTTTAGAGGCCCAAAAAGAATTAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCC +AGAAAYTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGCCATCAA +ATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAG +GGGAGGCCAGGAAATTTTCCTCAGAGCAGACCAGAACCATCAGCCCCACCAGMAGAGARC +TTTGGGATGGGGGAAGAGATAACCCCCTCCCTGAAACAGGAACAGAGAGACAGGGAACAG +CATCCTCCTTCAATTTCCCTCAAATCACTCTTTGGCAACGACCCATTGTCACAATAAGAA +TAGGAGGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAG +ACATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCA +AGGTAAGACAATATGATCAGATACCCATAGAAATTTGTGGAAAAAAGGCTATAGGTACAG +TATTAGTAGGACCTACCCCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGTT +GTACTTTAAATTTTCCAATAAGTCCTATTGAAACTGTACCAGTARCATTAAAGCCAGGAA +TGGATGGCCCAAAGGTTAAACAATGGCCATTAACAGAAGAGAAAATAAAAGCATTAACAG +AAATTTGTAGGGAAATGGAAAAGGAAGGAAAAATTTCGAAAATTGGGCCTGAAAATCCAT +ACAATACTCCAGTATTTGCGATAAAGAAAAAGGACAGCACTAAGTGGAGGAAATTAGTAG +ACTTCAGGGAGCTCAATAAAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCCC +ATCCAGCGGGTTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATT +TTTCAGTTCCTTTAGATGAAAGCTTCAGAAAGTATACTGCATTCACTATACCAAGTATAA +ACAATGAAACACCAGGGATCAGATACCAGTACAATGTACTTCCACAGGGATGGAAAGGAT +CACCAGCAATATTTCAGGCTAGCATGACAAAAATCTTAGAGCCCTTTAGATCAAAAAATC +CCGAAATAGTTATCTATCAATACATGGATGACTTGTATGTAGGCTCTGATTTAAAAATAG +GGCAACATAGAACAAAAATAGAGGAGTTAAGAGCTCATCTATTGAGCTGGGGATTTACTA +CACCAGACAAAAAGCATCAGAAAGAACCTCCATTTCTTTGGATGGGATATGAACTCCATC +CTGACAAATGGACAGTCCAGCCTATAATGCTGCCAGATAAAGACAGCTGGACTGTCAATG +ATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAG +TAAAGCAATTGTGTAAACTCCTCAGGGGAGCCAAAGCACTGACAGATATAGTGACACTGA +CTGAGGAAGCAGAATTAGAATTGGCAGAGAACAGAGAGATTCTAAAAGAACCTGTGCATG +GAGCATATTATGACCCATCAAAAGATCTAGTAGCAGAAATACAGAAACAAGGACAAGACC +AATGGACATATCAAATTTATCAGGAGCCATTTAAGAATCTAAAAACAGGAAAATATGCAA +AAAAGGGGTCTGCTCACACTAATGATGTAAAACAATTAACAGCAGTGGTGCAAAAGGTGG +CCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCATACAAAAAG +AAACATGGGAGGCATGGTGGATGGAGTACTGGCAGGCCACCTGGATTCCTGAATGGGAGT +TTGTCAATACCCCCCCTCTAGTAAAACTATGGTACCAGTTGGAGAAAGAACCCATAGTAG +GAGCAGAGACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAARATAGGAAAAGCAG +GGTATGTTACTGACAGAGGAAGACAAAAGGTTGTTTCTCTAACTGAGACAACAAATCAAA +AGACTGAATTACATGCAATCCATCTAGCTTTGCAGGATTCAGGATCAGAAGTAAATATAG +TAACAGACTCACAATATGCATTAGGAATTATTCAGGCACAACCAGACAGGAGTGAATCAR +AGATAGTCAATAAAATAATAGAGAAACTAATAGAAAAAGAAAAAGTCTACCTGTCATGGG +TACCAGCRCACAAGGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAA +TCAGGAGGGTGTTATTTTTAGARGGAATAGATMAGGCTCAAGAGGAACATGAAAAATATC +ACAGCAATTGGAAAGCAATGGCTAGTGATTTTAATCTGCCACCTGTAGTAGCAAAGGAAA +TAGTAGCCAGCTGTGATAAATGTCAACTAAAAGGGGAAGCTATGCATGGACAGGTAGACT +GTAGTCCAGGGATATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATCATAGTAG +CAGTCCATGTAGCCAGKGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGG +AGACAGCATACTTTCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAGTACACACAG +ATAATGGCCCCAATTTCACCAGTAGTGCAGTTAAGGCTGCCTGTTGGKGGGCAAATATCC +ATCAGGAATTTGGRATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATA +AGGAATTAAAGAAAATCATAGGGCAGGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAG +TACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTG +CAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAAC +AAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCAATTTGGA +AAGGACCAGCAAAGCTACTCTGGAAAGGTGAAGGGGCAGTGGTAATACAAGACAATAATG +ATATAAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGG +CAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTA +AAACATCATATGTATGTCTCAAAGAAAGCTAGAGAGTGGGTTTATAGACATCACTATGAA +AGCAGGAATCCAAGAGTAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGGCTAGTA +GTAAAAACATATTGGGGTCTGCAGGCAGGAGAAAAAGACTGGCACTTGGGTCATGGGGTC +TCCATAGAATGGAGACAGAAAATGTATAGCACACAAATAGACCCTGACCTGGCGGACCAA +CTAATTCATCTGTATTATTTTGACTGTTTTTCAGAATCTGCCATAAGGAAAGCCATAGTA +GGACACATAGTTAGCCCTAAGTGTAACTATCCAGCAGGACACAACAAGGTAGGATCACTA +CAATACTTGGCACTGAAAGCACTAGTAACACCAACAAGGGAAAGGCCACCTTTGCCTAGT +GTTAGGAAACTAACAGAGGATAGATGGAACAAGCCCCAGAAGACCAGGGGCCGCAGAGGG +AACCACACAATGAATGGATGTTAGAACTGTTAGAAGATATTAAGGTTGAAGCTGTCAGAC +ATTTTCCAAGACGGTGGCTACATGGATTAGGACAACATATCTATAACACCTATGGGGATA +CTTGGGAAGGGGTTGAAGCTATAATAAGAACTTTGCAACAACTACTGTTTGTTCATTTCA +GAATTGGGTGCCAACATAGCAGAATAGGCATTGTGCAAAGGAGAAGAGGCAGAAATGGAT +CCAGTAGATCCTAACCTAGAGCCCTGGAATCATCCAGGAAGTCAGCCTAAAACTGCTTGT +AGCAATTGTTACTGTAAAAGGTGTTGCTGGCATTGCCAAATTTGCTTTCTAAAAAAAGGC +TTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACACAGACGCGGAACTCCTCACAGCAGT +AAGGATCATCAAACTCCTATATCAAAGCAGTAAGTAGTAAATAAATGTAATGACACCTTT +AGAAATCTATGCAATAGTAGCATTAGTAATAGTGTTTGTCATAGCAGTAGTTGTGTGGAC +TATAGTAGGCATAGAATATAGGAAATTGCTAAAACAAAGAAAAATAGACAGATTAATTAA +GAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGCGAGGGGGATGAAGAGGAATT +ATCAACACTTATGGAGGTGGGGGACTATGTTCCTTTGGATGATAATAATGTGTAAGGCTG +CAGAAAACTTGTGGGTCACGGTATACTATGGGGTACCTGTGTGGAGAGATGCAGAGACCA +CCCTATTCTGTGCATCGGATGCTAAAGCATATGATAAAGAAGTACACAATGTCTGGGCCA +CACATGCCTGTGTACCCACAGACCCTAACCCGCAAGAAATAATTTTGGAAAATGTGACAG +AAGAATTTAACATGTGGAAAAATAACATGGTAGAACAAATGCAAACAGATATAATCAGTC +TCTGGGACCAAAGCCTAAAGCCATGTGTACAGTTAACCCCTCTCTGCGTTACTTTAAATT +GTACTGAACCCATCAGCACTAACTCTAACAACAGTATCTTTAACTCTAACAACAGTATCT +TTAACAACAGTAGCGTTAACAGCAATAATAGCATGGTAGGAGAAATAAAAAACTGCTCTT +TCAACATGACCACAGAACTAAGAGATAAAAGGAAAACTGTACATTCACTTTTTTATAAAC +TTGATATAGTACCAATTGATAATGATAATAATAATAGTAGTCAGTATAGACTAATAAATT +GTAATACATCAACCGTGACACAGGCCTGTCCTAAGGTAAACTTTGAGCCAATTCCTATAC +ATTATTGTACCCCAGCTGGTTTTGCGATTCTAAAGTGCAGGGATCCAAACTTTACGGGAA +AAGGGCCATGCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAGGCCAGTAGTAT +CAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAAGTAATGATTAGATCTGAAA +ATATTACAGACAATGGCAAGACCATAATAGTACAGCTTACTGAGCCTGTAAACATCACTT +GTATCAGACCTGGCAACAATACAAGAACAAGTATACGTATAGGACCAGGACAAACCTTCT +ATGCAACAGGTGATGTAATAGGGGACCCAAGAAAAGCACACTGTGAAGTCAACAAAACAG +CATGGAATAACACTTTACAAAAGATAAGTATGCAATTAAGAAAATACTTTAATAACAAAA +CAATAATCTTTAAGAAATCCTCAGGAGGGGATTTAGAAGTTACAACACATAGTTTCAATT +GTGGAGGAGAATTTTTCTATTGCGATACAACAGCCCTGTTCAATAGCACTTGGGAAAATG +GCACTGTTATAAATAGCACACAGGCCAATGAGACTATAACTCTACCATGCAGAATAAAGC +AAATTATAAATATGTGGCAGAGAGTAGGACGAGCAATGTATGCCCCTCCTATCAGAGGAA +TTATAAGGTGTGAATCAAACATTACAGGACTACTACTAACAAGAGATGGTGGAGGTGGAA +ATAATAGCAGCAATGAGACCTTCAGACCTATAGGAGGAAATATGGAGGACAATTGGAGAA +GTGAACTATATAAGTATAAAGTAGTAGAAATTGAACCAATAGGAGTAGCACCTACCAAGG +CAAAGAGAAGAGTGGTGGAGAGGGAAAAAAGAGCAATTGGACTGGGAGCTGCCTTCCTTG +GGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCACTAACGCTGACGGTACAGG +CCAGACAATTATTGTCTGGCATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGG +CTCAGCAGCATCTGCTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCC +TGGCTGTGGAAAGATACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTGGAA +AACTCATCTGCACCACTACTGTGCCCTGGAACTCTAGTTGGAGTAATAAATCTCAGGATG +AGATATGGGAGAACATGACCTGGATGCAATGGGACAAGGAAATTATCAATTACACAAACA +AAATATATGATCTAATTGAAAAATCGCAAAACCAGCAGGAAAAGAATGAACAAGATTTAT +TAGCATTGGATAAGTGGGAAGGTCTGTGGAGTTGGTTTAGCATATCAAATTGGTTATGGT +ATATAAGAATATTTATAATAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTGCTG +TGCTTTCTATAATAAATAGAGCCAGGCAGGGATACTCACCCTTGTCATTGGACACCCTTA +CCCCACACCCAGAGGGACCAGACAGGCCCGGAGAAATCAAAGAAGAAGGTGGAGAGCAAG +GCAGAGACAGATCGATTCGATTAGTGAGCGGATTCTTAGCACTTGCCTGGGACGATCTGA +GGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGAGACTTCATCTCGATTGCAGCGAGGA +CTGTGGAACTTCTGGGACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGGGCCTCA +AATATCTGGGGAATCTTCTGGGATATTGGGGTCAGGAACTAAAGAGTAGTGCTATTAATC +TGGTAGATACCATAGCAATAGTAGTAGCTGGGTGGACAGATAGGGTTTTGGAAATAGGAC +AAAGATTTTGTAGAGCTATTTGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAAAGG +CTTTGCAATAACATGGGGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGATT +AGGGAAAGAATAAGACGAGCTCCTGCTCCAGCTCCTGCTCCAGCACCAACAGGAGTAGGA +CCAGTRTCTCGAGATTTGGATAAACATGGAGCAGTCACAAGCAGTAATACAGCAGCTACT +AATGCTGATTGCGCCTGGCTGGAGGCGCAAGAGGAAGAGGARGTAGGCTTTCCAGTCAAG +CCGCAGGTACCTTTGAGACCRATGACATATAAGGGAGCTTTCGATYTCAGCCACTTTTTA +AAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAGAAAAGACAAGAAATCCTTGAT +YTGTGGGTYTATCACACCCAAGGCTACTTCCCTGATTGGCAGAATTATACCCCAGGGCCA +GGGGTTAGATACCCMCTAACATTTGGGGGGTGYTCCAAGCTAGTACCAGTTGACCCAGAT +GAAGTAGAAGCAGCCCCAGAGGGAGAGAACAACTGCCTTTTACCCCCTATATGCCAGCCC +GGAATGGATGATGAGGAGAAAGAAGTGTTAATGTGGAAGTTTGACAGTCCCCTGGCTTTA +AAACCCAGAGCCCGAGARCTGCATCCGGAGTTTTACAAAGACTGCTGACACAGACTGCTG +ACATGAAGTTGCTGACAGGGACTTTCCGCAGGGACTTTCCAGGGGGGTGTGGTTTGGGCG +GAGTTGGGGAGTGGCTAACCCTCAGATGCTG +>C.MW.2009.0.DEMC09MW009.KP109526 KP109526 +CCGAACAGGGACCTGAAAGCGAAAGTAAGACCAGAGAAGATCTCTCGACGCAGGACTCGG +CTTGCTGAAAGTGCACTCGGCAAGAGGCGAGAGCGGCGGCTGGTGAGTACGCCAAATTTT +ATTTGACTAGCAGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAATATTAAGAGGG +GGAAAATTGGATAAATGGGAAAAAATTAGGTTAAGGCCAGGGGGAAAGAAACATTATATG +ATAAAACACATAGTATGGGCAAGCAGGGAGCTGGAAAGATTTGCACTTAACCCTGGCCTT +TTAGAGACAGCGGATGGCTGTAAACAAATAATAAAACAGCTACACCCAGCTCTTAAGACA +GGAACAGAGGAACTTAGATCATTATATAACACAGTAGCAACTCTCTACTGCGTACATGCA +GGGATAGAGGTACGAGACACCAAGGAAGCCTTAGACAAGATAGAGGAAGAACAAAATAAA +TGTCAGCAAAAAACACAGAAGGCACAAGCAGCTGACGAGAAAGTCAGTCAAAATTATCCA +ATAGTGCAGAATCTCCAAGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTGAAT +GCATGGGTGAAAGTGATAGAGGAAAAAGCTTTTAGCCCAGAGATAATACCCATGTTTTCA +GCATTATCAGAAGGGGCCACCCCACAAGATTTAAACACCATGTTAAATACAGTGGGGGGA +CATCAAGCAGCCATGCAAATGTTAAAGGATACTATCAATGAGGAGGCTGCAGAATGGGAT +AGGCTACATCCAGTCCATGCAGGGCCTATTGCACCAGGTCAAATGAGAGAACCAAGGGGA +AGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAAC +CCACCTATTCCAGTGGGAGACATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATA +GTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGGCCAAAGGAACCCTTT +AGAGACTATGTAGATCGGTTCTTTAAAACTCTAAGAGCTGAACAAGCTACACAAGAGGTA +AAAAATTGGATGACAGACACCTTGTTGGTCCAAAATGCGAACCCAGACTGTAAGACAATT +TTAAAAGCATTAGGACCAGGGGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTG +GGAGGACCTAGCCACAAAGCAAGGGTTTTGGCTGAGGCAATGAGTTTGGCAGGCAATACA +AACATAATGATGCAGAGAAGCAATTTTAAAGGATCTAAAAGAGTGGTTAAATGTTTCAAC +TGTGGCAAGGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAAGGCTGTTGG +AAATGTGGAAAGGAAGGACACCAAATGAAAGACTGTACTGAAAGACAGGCCAATTTTTTA +GGGAAAATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCATTCAGAACAGGCTAGAA +CCAACAGCCCCACCAGCAGAGAGCTTCAGATTCGAGGAGACAACCCCTGCTCCGAAACAG +GGACCGAAAGAAGGGGACTTAATTTCCCTCAAATCACTCTTTGGCAGCGACCCATTGTCA +CAATAAAAGTAGGGGGCCAGATAAAGGAGGCTCTCTTAGACACAGGAGCAGATGATACTG +TATTAGAAGAAATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAG +GTTTTATCAAAGTAAGACAGTATGATCAAATACTTATAGAAATTTGTGGAAAAAGGGCTA +TAGGTGCAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACTC +AGCTTGGATGCACACTAAATTTTCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAA +AGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAG +CTTTAACAGCCATTTGTGAAGAAATGGAGAGGGAAGGAAAAATTACAAAAATTGGGCCTG +AAAATCCATATAACACTCCAATATTTGCCATAAAAAAGAAAGACAGTACTAAGTGGAGAA +AATTAGTAGACTTCAGGGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAG +GAATACCACACCCAGCAGGGTTAAAAAAGAAAAAATCAGTGACAGTACTGGATGTGGGAG +ATGCATATTTTTCAGTCCCTTTAGATGAAGGTTTCAGGAAATATACTGCATTCACCATAC +CTAGTACAAACAATGAAACACCAGGGATAAGGTATCAATATAATGTGCTTCCACAGGGAT +GGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGGG +CAAGAAATCCAGAAATAGTTATCTATCAATATATGGATGACTTGTATGTAGGATCTGACT +TAGAAATAGGGCAACACAGAGCAAAAATAGAGGAGTTAAGGGAACATCTATTAAAATGGG +GATTTACCACACCAGACAAGAAGCATCAAAAGGAACCCCCATTTCTTTGGATGGGGTATG +AGCTCCATCCTGACAAATGGACAGTGCAGCCTATACAGCTGCCAGAAAAGGATAGCTGGA +CTGTCAATGATATACAGAAGTTGGTGGGAAAATTAAACTGGGCAAGTCAGATCTATGCAG +GAATTAAAGTAAAACAACTTTGTAAACTCCTTAGGGGAGCCAAAGCACTAACAGACATAA +TACCACTAACTGAAGAAGCAGAATTAGAATTAGCAGAGAATAGGGAAATACTAAGAGAAC +CAGTACATGGAGTATATTATGATCCATCAAAAGACTTAATAGCTGAAATACAGAAACAAG +GGCAGGGCCAATGGACATATCAAATTTATCAAGAACCATTCAAGAATCTGAAAACAGGGA +AGTATGCAAAAACAAGGACTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGC +AAAAAATATCCATGGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCA +TCCAAAAAGAAACATGGGAGACATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTG +AGTGGGAGTTTGTTAATACCCCTCCCCTAGTAAAATTATGGTACCAGCTGGAGAAAGACC +CCATAGCAGGGGCAGAAACTTTCTATGTAGATGGAGCAGCTAACAGAGAAACTAAACTAG +GGAAAGCAGGGTATGTTACTGACAAAGGAAGGCAGAAAATTATCTCTCTAACTGAAACAA +CAAATCAGAAGGCTGAGCTACAAGCAATTCAGCTAGCTTTACAGGATTCAGGATCAGAAG +TAAACATAGTAACAGACTCACAGTATGCATTAGGAATCATTCAAGCACAGCCAGATAGGA +GTGAATCAGAGTTAGTTAGCCAAATAATAGAGCAGTTAATAAACAAGGAAAGAATTTACC +TGTCATGGGTACCAGCACATAAAGGAATTGGAGGAAATGAACAAGTAGACAAATTAGTAA +GTAGTGGAATCAGGAAAGTGCTGTTTCTAGATGGAATAGATAAGGCTCAGGAAGAGCATG +AGAAGTATCACAGCAATTGGAGAGCAATGGCTAGTGAGTTTAATCTGCCACCCGTAGTAG +CAAAAGAAATAGTAGCTTGTTGTGATAAATGTCATCAAAAAGGGGAAGCCATACATGGAC +AAGTGGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTTA +TCCTGGTAGCAGTCCATGTAGCCAGTGGATACATAGAAGCAGAGGTTATCCCAGCAGAAA +CAGGACAAGAAACAGCATACTACATACTAAAATTAGCAGGAAGATGGCCAGTCAAAGTAA +TACATACAGACAATGGCAGTAATTTCACCAGTGCTGCAGTTAAGGCAGCCTGTTGGTGGG +CGGGTATCAAACAGGAATTTGGGATTCCCTACAATCCCCAAAGCCAAGGAGTAGTAGAAT +CCATGAATAAAGAATTAAAGAAAATCATAGGGCAAGTAAGAGATCAAGCTGAGCACCTTA +AAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAGAGGGGGGATTGGGG +GGTACAGTGCAGGGGAGAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAAT +TACAAAAACAAATTACAAAAGTTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACC +CTATTTGGAAAGGACCAGCCAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAG +ATAACAGTGACATAAAGGTAGTACCAAGGAGGAAAGTAAAAATTATTAAGGACTATGGAA +AACAAATGGCAGGTGCTGATTGTGTGGCAAGTAGACAGGATGAGAATCAGGACATGGAAT +AGTTTAGTAAAACACCATATGTATGTTTCAAGGAGAGCTAATGGATGGTTTTACAGACAT +CATTATGAAAGCAGACATCCAAAAGTAAGTTCAGAAGTACACATCCCATTAGGGGAGGCT +AGATTAGTAATAATAACATATTGGGGTTTGCAAACAGGAGAAAGAGAGTGGCATCTGGGT +CATGGAGTCTCCATAGAATGGAGATTGAGAAGATATAGCACACAAATAGACCCTGGCCTG +GCAGACCAACTAATTCATATGCATTATTTTGATTGTTTTGCAGACTCTGCCATAAGAAAA +GCCATATTAGGACATATAGTTAGACCTAGGTGTGACTATCAAGCAGGACATAATAAGGTA +GGATCTCTACAATACTTGGCACTGACAGCATTGATAAAACCAAAAAAGAGAAAGCCACCT +CTGCCTAGTGTTAGGAAATTAGTAGAGGATAGATGGAACAACCCCCAGAAAACCAGGGGC +CGCAGAGGGAACCATACAATGAATGGGCATTAGAGATTCTAGAAGAACTGAAGCAGGAAG +CTGTCAGACACTTTCCTAGACCATGGCTCCATGGCTTAGGACAATATATCTATGAAACCT +ATGGAGATACATGGGCTGGGGTTGAAGCTCTAATAAGAGTACTGCAACAATTACTGTTTG +TTCATTTCAGAATTGGGTGCCAGCATAGCAGAATAGGCATTTTGCAACAGAGGAGAGCAA +GAAATGGACCCAATAGATCCTAACCTAGAGCCCTGGAACCATCCAGGAAGTCAGCCTAAA +ACTGCTTGTAACGATTGCTATTGTAAGCACTGCTGCTACCATTGTTTAGTTTGCTTCCAG +ACAAAAGGCTTAGGCATTTACTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCT +CCGAGCAGTGAGGATCATCAAGATTCTGTATCAAAGCAGTAAGTACTCAATAGTAGATGT +AATGTTAGAGTTAATAGATTATAGATTAGCAGTAGGAGCATTAATAGTAGCATTAATCTT +AGCAATAATAGTGTGGACCATAGCATATATAGAATATAGGAAATTGGTAAGACAAAGAAA +AATAGACTGGTTAATTAAAAGAATTAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGTGA +TGGGGATACAGAAGAATTGTCAACAATGGTGGATATGGGGCATCTTGGGCTTTTGGATGC +TAATGATTTGTAATACGAAGGACAGGGACTTGTGGGTCACAGTCTACTATGGGGTGCCTG +TGTGGAAAGAAGCAAAAACTACCCTATTTTGTGCATCAGATGCTAAAGCATATGACAAAG +AAGTGCATAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAACCCACAAGAAA +TGCCTTTGGAAAATGTAACAGAAAACTTTAACATGTGGGAAAATGACATGGTAGATCAGA +TGCATGAGGATATAATCAGTCTATGGGATCAAAGCCTCAAGCCGTGTGTAGAGTTGACCC +CACTATGTGTCACTTTAAACTGTACTACCTACAATAATAACAGTGGGAACCTTAGGGAAG +ACATGGAAGGAAAAATACAAAACTGCTCTTTCAATGTAACCACAGAATTAAGAGATAAGA +AAAGTAAAGAATATGCACTTTTTTATAGAATTGATCTAGTACCACTTAATAGCTCTAGTA +ACTCTAATATAGTACCATCTAATAGCTCTAGTAACTCTAGTGAGTATAGTGAGTATAGAT +TAATAAATTGCAATACCTCAACCATAACACAAGCCTGTCCAAAGGTCTCTTTTGACCCAA +TTCCTATACATTATTGTGCTCCAGCTGGATATGCGATTCTAAAGTGTAATAATAAGACAT +TCAATGGAACAGGACCATGCAATAATGTCAGCACAGTACAATGTACACATGGAATTAAGC +CAGTGGTATCAACTCAGTTACTGTTAAATGGTAGTCTAGCAGAAGAAGAGATAATAATTA +GATCTAAAAATTTGTCAGACAATGCCCAAACAATAATAGTACATCTTAATAAATCTGTAG +AGATTAAGTGTATAAGACCCGGCAATAATACAAGGAAAAGTGTGAGGATAGGACCAGGAC +AAACATTCTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTA +GTGAAACTGATTGGAAAGAAACTTTACACAATGTTAGCAAAAAACTAAAAGAACACTTCA +ATAAAACAATAAAGTTTAGCTCATCCTCAGGAGGGGACCTAGAAATTACAACACATAGTT +TTAATTGTGGAGGAGAATTTTTCTATTGCAATACATCAGGACTGTTCAATGGCACATACA +ATAATACAAATAGTACAGAGGGTATAAATAAAACCATCACACTCCCATGCAGAATAAAAC +AAATTATAAACATGTGGCAGAAGGTAGGACGAGCAATGTATGCCCCGCCCATTGCAGGAA +ACATAATATGTAACTCAAGTATCACAGGACTACTATTGACACGTGATGGAGGAGTACATG +ACAATGAGAATGAGACGGAGACATTCAGACCTGGAGGAGGAGACATGAGGGACAATTGGA +GAAGTGAATTATATAAATATAAAGTGGTAGAAGTGGAGCCATTGGGAGTGGCACCCACTA +AGGCAAAAAGAAGAGTGGTGGAGAGAGAGAAAAGAGCAGTGGGAATAGGAGCTTTGTTCC +TTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTAC +AGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGGACAATCTGCTGAGAGCTATAG +AGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGTATTAAGCAACTCCAGGCAAGAA +TCCTGGCTATAGAAAGATACCTAAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTG +GAAAACTCATCTGCACCACTGCTGTGCCTTGGAATGATAGTTGGAGCAATAAAACTTATG +ATGAGATTTGGGAGAACATGACCTGGATGCAGTGGGATAGAGAAATTAGTAATTACACAT +ACACAATATACAGGTTGCTTGAAGACTCGCAAATCCAGCAGGAAAAAAATGAACAGGATT +TATTAGCATTGGACAGTTGGAAAAATCTGTGGAGTTGGTTTGGCATAACAAAATGGTTGT +GGTATATAAAAATATTTATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTG +CTGTACTATCCATAGTGAATAGAGTTAGGCAGGGATACTCACCTTTGTCGTTCCAGACCC +TCAGCCCGAACCCAGGGGGACCAGACAGGCTCGGAAGAATCGACGAAGAAGGTGGAGAGC +AAGACAGAAACAGATCTGTGCGCTTAGTGAACGGATTCTTAGCACTTGCCTGGGACGACC +TGCGGAGCCTGTGCCTCTTCAGCTACCGCCAATTGAGAGACTTCATATTGATTGCAGCGA +GAGCGGCGGAACTTCTGGGACGCAGCAGTCTCAGGGGACTACAGAGGGGGTGGGAAGCCC +TTAAATATCTGGGAAGTCTTGTGCAGTATTGGGGTCTGGAACTAAAAAGGAGTGCTATTA +GTCTGCTTGATACCATAGCAATAGCAGTAGCTGAAGGAACAGATAGAATTATAGAAGTAG +TACAGAGACTTTGTAGAGCTATCCTCAATATACCTAGAAGAATCAGACAGGGCTTTGAAA +CAGCTTTGCTATAAAATGGGGGGCAAGTGGTCAAAAAGCAGTCTAGTTGGATGGCCTGCT +GTCAGGGAAAGAATGAGACGTACACCAGTAGCAGAGAAAGTAGGAACAGCAGCAGAGGGA +GTAGGAACAGCGTCTCAAGACTTAGATAAGCATGGGGCACTTACAACCAGTAACACAGCC +AGCAACAATGCTGCTTGTGCCTGGCTGGAGGCACAAGAAGAGGGAGGGGGTGAAGAGGTT +GGCTTTCCAGTCAGACCTCAGGTGCCTCTAAGACCAATGACTTATAAAGCAGCATTCGAT +CTCGGCTTCTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTAATTTACTCCAAGAAAAGA +CAAGAAATCCTTGATTTGTGGGTCTATAACACACAAGGCTTCTTCCCTGATTGGCAAAAC +TACACACCAGGACCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTA +CCAGTTGACCCAAAGGAAGTCGAAGAGGCCAATGAAGGAGAGAACAACAGCCTGCTACAC +CCTATGAGCCTGCATGGAATGGAGGATGAAGAAGGAGAAGTATTAAGATGGAAGTTTGAC +AGCAGTCTCGCACGCAGACACCTAGCCCGCGAGCTACATCCGGAGTGGTACAAAGATTAA +TTGCTGACACAGACTGCTGACACAGCGGGACTTTCCGCTGGGACTTTCCACTGGGGCGTG +CCAGGAGGGGTGGTCTGGGCGGGACGGGGAGTGGCCAGCCCTCAGATGCTGCATATAAGC +AGCTGCTTTTCGCCTGTACTGGGTCTCTCTAGGTAGACCAGATCTGAGCCCGGGAGCTCT +CTGGCTATCTAGGGAACCC +>C.MW.2009.0.CH1064.PL.080409.A2.08.KY111994 KY111994 +GAGATCCCTCAGACCCTTTTGGTAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGG +ACTTGAAAGCGAAAGTAGAACCAGAGAAGATCTCTCGACGCAGGACTCGGCTTGCTGAAG +TGCACTCGGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAAAATTTTATTTGACTAG +CGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAAAGGCGGAAAATTAG +ATAAATGGGAAAAAATTAGGTTAAGGCCAGGGGGAAAGAAACATTATATGTTAAAACATT +TAATATGGGCAAGCAGAGAGCTGGAAAGATTTGCACTTAACCCTGGCCTTTTGGAAACAT +CAGAAGGCTGTAAGCAGATAATAAAACAGCTACAACCAGCTCTTCAGACAGGGACAGAGG +AACTTAGATCATTATTTAACACAGTAGCAGTTCTCTATTGTGTGCATCAAAATATAGAGG +TAAGAGACACCAAGGAAGCCTTAGACAAGATAGAGGAAGAACAAAAGAAATGTCAGCAAA +AAACACAGCAGGCACAAACGGCTGGCGGAACGGTCAGTCAAAATTATCCTATAGTGCAAA +ATCTTCAAGGGCAAATGGTACACCAGGCCATATCACCTAGAACTTTGAATGCATGGGTAA +AAGTAATAGAGGAGAAGGCCTTTAGCCCAGAGGTGATACCCATGTTTACAGCATTATCAG +AAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAG +CCATGCAAATGTTAAAGGATACCATCAATGAGGAGGCTGCAGAATGGGATAGATTACATC +CAGTACATGCAGGGCCTGTTGCACCAGGCCAAATGAGAGAACCAAGGGGAAGTGACATAG +CAGGAACTACTAGTACCCTTCAGGAACAAATAAATTGGATGACAGGTAACCCACCTATTC +CAGTGGGAGACATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGT +ATAGCCCTGTCAGTATTTTGGACATAAAACAAGGGCCAAAGGAACCTTTTAGAGACTATG +TAGACCGGTTCTTTAAATGTCTAAGAGCAGAACAGGCTTCACAAGATGTAAAAAATTGGA +TGACAGACACCTTGTTGGTCCAAAATGCAAACCCAGATTGTAGAAACATTCTAAAAGCAT +TGGGAACAGGGGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTG +GTCATAAAGCAAGAGTTTTGGCTGAGGCAATGAGCCATGTAACAAATGCAAATGCTGCTA +TAATGATGCAGAGAAACAATTTTAAGGGCCCAAAGAAAAACATTAAGTGTTTCAACTGTG +GCAAGGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAAGGCTGTTGGAAAT +GTGGAAGGGAAGGACACCAAATGAAAGACTGTACTGAAAGACAGGCTAATTTTTTAGGGA +AAATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCCTCCAGAGCAGACCAGAGCCAA +CAGCCCCACCAGCAGAGAGCTTCAGGTTCGAGGAGACAACCTCTGCTCTGAAGCAGGAGC +CGAAAGACAGGGAACCCTTAACTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCTC +AGTAAAAGTAGGGGGCCAGATAAGAGAGGCTCTCTTAGACACAGGAGCAGATGATACAGT +ATTAGAAGAAATAGATTTGCCAGGAAAATGGAAACCAAAAATGATAGGAGGAATTGGAGG +TTTTATCAAAGTAAGGCAGTATGATCAAATACTTATAGAAATTTGTGGAAAAAAGGCTAT +AGGTACAGTGTTAGTGGGACCTACACCTGTCAACATAATTGGCAGAAACATGTTGACTCA +GCTTGGATGCACACTAAATTTTCCAATTAGTCCCATTGAAACTGTACCAGTAAAATTGAA +ACCAGGAATGGATGGCCCAAAGGTTAAACAGTGGCCATTATCAGAAGAGAAAATAAAAGC +ATTAACAGCAATTTGTGACGAAATGGAGAAGGAAGGAAAAATTACAAAAATTGGGCCTGA +AAATCCATATAACACTCCAATATTTGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAA +ATTAGTAGATTTCAGAGAACTCAATAAAAGAACTCAAGACTTTTGGGAGGTTCAATTAGG +AATACCACACCCAGCAGGGTTAAAAAAGAAAAAATCAGTGACAGTACTGGATGTGGGGGA +TGCATATTTTTCAGTTCCTTTAGATGAAAACTTTAGGAAATATACTGCATTCACCATACC +TAGTAGAAACAATGAAACACCAGGGATTAGATATCAATATAATGTGCTGCCACAGGGATG +GAAAGGATCACCAGCAATATTCCAGCACAGCATGACAAAAATCTTAGAGCCCTTTAGAAC +AAAAAATCCAGAAATAATTATCTATCAATATATGGATGACTTGTATGTAGGGTCTGACCT +AGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTGAGATGGGG +ATTTACCACACCAGACAAGAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGA +ACTCCATCCTGACAAATGGACAGTACAGCCCATACAGCTGCCAGAAAAGGAAAGCTGGAC +TGTCAATGATATACAGAAGTTGGTGGGAAAATTAAACTGGGCAAGTCAGATTTACCCAGG +GATTAAAGTAAGGCAACTTTGCAAACTCCTTAGGGGGGCCAAAGCACTAACAGACATAGT +ACCACTAACTGAAGAAGCAGAATTAGAATTGGCAGAGAACAGGGAAATTCTAAAAGAACC +AGTACATGGGGTATATTATGACCCATCAAAAGACTTGATAGCTGAAATACAAAAACAGGG +TCATGATCAATGGACATATCAAATTTACCAAGAACCATTTAAAAATCTGAAAACAGGAAA +GTATGCAAAAATGAGGACTGCCCACACTAATGATGTCAAACAGTTAACAGAGGCAGTACA +AAAGATAGCCTTGGAAAGCATAGTGATATGGGGAAAGACTCCTAAATTTAGACTACCCAT +CCAAAAGGAAACATGGGAGACATGGTGGACAGATTATTGGCAAGCCACCTGGATTCCTGA +TTGGGAGTTTGTCAATACCCCTCCTCTAGTAAAATTATGGTACCAGCTAGAAAAAGAGCC +CATAGCAGGAGTAGAAACTTTCTATGTAGATGGAGCAGCTAATAGGGAAACTAAAATGGG +AAAAGCAGGGTATGTTACTGACAGAGGAAGGCAGAAAGTCATTACTCTAAATGAAACAAC +AAATCAGAAGACTGAATTACAAGCAATTCATCTAGCCTTGCAAGATTCAGGATCAGAAGT +AAACATAGTAACAGACTCACAGTATGCATTAGGAATCATCCAAGCACAACCAGATAAGAG +TGAATCAGAGTTAGTCAATCAAATAATAGAGCAGCTAATAAACAAGGAAAGGGTTTACCT +GTCATGGGTACCAGCACATAAGGGAATTGGAGGAAATGAACAAGTGGATAAATTAGTAAG +CAGTGGAATCAGGAAAGTGTTGTTTTTAGATGGAATAGATAAGGCTCAAGAAGAGCATGA +AAAATATCACAACAATTGGAGAGCAATGGCTAGTGATTTTAATCTGCCACCCATAGTAGC +AAAAGAAATAGTAGCTAGCTGTGATAAATGTCAGCAAAAAGGGGAAGCCATACATGGACA +AGTAGACTGTAGTCCAGGGATATGGCAATTAGACTGTACACATTTAGAAGGAAAAGTTAT +CCTAGTAGCAGTCCATGTAGCCAGTGGCTATATAGAAGCAGAGGTTATCCCAGCAGAAAC +AGGACAAGAAACAGCATACTATATATTAAAATTAGCAGGAAGATGGCCAGTCAAAGTAAT +ACATACAGACAATGGCAGTAATTTCACCAGTGCTGCAGTTAAGGCAGCCTGTTGGTGGGC +AGGTATCAACCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAGGGAGTAGTAGAATC +CATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTAAGAGATCAAGCTGAGCATCTTAA +AACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGG +GTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAGAGAATT +ACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGATCC +TATTTGGAAAGGACCAGCCAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGA +TAACAGTGACATAAAGGTAGTACCAAGGAGGAAAGTAAAAATCATTAAGGACTATGGAAA +ACAGATGGCAGGTGCTGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAATA +GTTTAGTAAAGCACCATATGTATGTTTCAAGGAGAGCTAGTGGGTGGTTTTACAGACATC +ATTTTGAAAGCAGACATCCAAAAACAAGTTCAGAAGTACATATACCATTAGGAGAAGCTA +GATTGATAATAAAAACATATTGGGGTTTGCAAACAGGAGAAAGAGACTGGCATTTGGGTC +ATGGAGTCTCCATAGAATGGAGACTGAGAAGATATAGCACACAAGTAGACCCTAGCCTGG +CAGACCAGCTAATTCATATTCATTATTTTGATTGTTTTGCAGAATCTGCCATAAGGAAAG +CCATATTAGGACACATAGTTAGTCCTAGGTGTGACTATCAAGCAGGACATAATAAGGTAG +GATCTCTACAATACTTGGCCCTGACAGCATTGATAAAACCAAAAAGGATAAAGCCACCTC +TGCCTAGTGTTAGCAAGTTAGTAGAGGATAGATGGAACAACCCCCAGAGGACCAGGGGCC +GCAGAGGGAACCATACAATGAATGGACACTAGAGCTTTTAGAAGAACTCAAGCAGGAAGC +TGTCAGACACTTTCCTAGAACGTGGCTCCATGGCTTGGGACAACACATCTATGAAACCTA +TGGGGATACTTGGATGGGAGTCCAAGCTATAATAAGAATTTTGCAACAACTACTGTTTGT +TCATTTCAGAATTGGGTGCCAGCACAGCAGAATAGGCATTATGCCACGTAGAAGAACAAG +AAATGGAACCAGTAGATCCTAAACTAGAGCCCTGGAACCATCCAGGAAGTCAGCCAAAAA +CCCCTTGTAATAATTGTTATTGTAAACACTGTAGCTACCATTGTTTAGTTTGCTTTCAGA +CAAAAGGCTTAGGCATTTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGCGCTCCTC +CGAGCAGTGAGGATCATCAAAATCCTCTATCAAAGCAGTAAGTAACCAATAGTAGATGTA +ATGTTTGATTTATATGCAAAAGTAGATTATAGACTAGGAGTAGGAGCATTGATAGTAGCA +CTAATCATAGCAATAATTGTGTGGACCATAGTATATATAGAATATAGGAAACTGTTAAGA +CAAAGGAAAATAGACTGGTTAATTAAAAGAATTAGGGAAAGAGCTGAAGATAGTGGCAAT +GAGAGTGATGGGGATACTGAAGAATTATCCACAATGGTGGATATGGGGCATCTTAGGCTT +TTGGATGCTAATGATTTGTAATGGGAAAGGAAACTTGTGGGTCACAGTCTATTATGGGGT +ACCAGTATGGAAAGAAGCAAAAACTACTCTGTTTTGTGCATCAGATGCCAAAGCATATGA +GAAAGAAGTGCATAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCCAGCCCACA +AGAATTGGTTTTGGAAAATGTAACAGAAAATTTTAACATGTGGAAAAATGATATGGTAGA +TCAGATGCATGAGGATATAATCAGTCTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTT +GACCCCACTCTGTGTCACTTTAAATTGTAGTAATGCTACTGTTGACAGTAGTAAAGTTTA +TGATACTAGGAGTAATGTTAATGTTACCAGTATCAATAATAACATAATGGGAGAAATGAA +AAATTGCTCTTTCAATACAACCACAGAAATAAGAGATAAGGTAAAGAAGGAATATGCACT +TTTTTATAGACCTGATGTAGTACCACTTGATGAAACAAGCAATACCAGTGAGTATAGATT +AATAAATTGTAATACCTCAGCCGTAACACAAGCCTGTCCAAAGGTCACTTTTGAACCAAT +TCCTATACATTATTGTGCTCCAGCTGGTTATGCGATTCTAAAGTGTAATAATAAGACATT +CAATGGAACAGGACCATGCAGTAATGTCAGCACAGTACAATGTACACATGGAATTAGGCC +AGTGGTATCAACCCAACTACTGTTAAATGGTAGTCTGGCAGAAAAAGAGATAGTAATTAG +ATCTGAAAACCTGACAAACAATGCCAAAATAATAATAGTCCATCTTAACACCTCTGTAGA +AATTGTGTGTACAAGGCCCGGCAATAATACAAGGAAAAGTGTGAGAATAGGACCAGGACA +AACATTCTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTAG +TGAAAAGCAATGGAATAACACTTTACAAGAGGTAGGTAAAGAATTGCAAAAACACTTCCC +TAATAAGACAATAAAGTATGAACGATCCGCAGGAGGAGACATGGAAATTGCAACACATAG +CTTTAATTGTGGAGGAGAATTTTTCTATTGCAATACATCAAATCTGTTTAATGGTACATA +CAATGGTACATACATAAGTACAAACAGTACTTCAAACATCACGCTTCAATGCAGAATAAA +ACAAATTATAAACATGTGGCAGGGGGTAGGAAGAGCAATGTATGCTCCTCCCATTGCAGG +AAACATAACATGTAAATCAAATATCACAGGGCTACTATTGACACGTGATGGAGGGACCAA +AAATAATAGCAACGAAACAGAGGAGACATTCAGGCCTGCAGGAGGAGATATGAGGGATAA +TTGGAGAAGTGAATTATATAAATATAAAGTAGTAGAAATTCAGCCATTAGGAATAGCACC +AACTGGTGCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAGCAGGACTAGGAGCTTT +GTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGAC +GGTACAGGCCAGACAATTGTTGTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAGGGC +TATAGAGGCGCAACAGCATATGTTGCAACTCACGGTCTGGGGCATCAAGCAGCTCCAGGC +AAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTAGGGATGTGGGGCTG +CTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAACACTAGTTGGAGTAATAAATC +TGAAAAGGATATTTGGGATAACATGACATGGATGCAGTGGGAGAGAGAAATTAGCAATTA +CACAGAGACAATATACATGTTGCTTGAAGACTCGCAACACCAGCAGGAAAGAAATGAAAA +AGATTTACTAGCATTGGACAGTTGGAACAGTCTGTGGAATTGGTTTAACATAACAAACTG +GCTGTGGTATATAAGAATATTCATGATGATAGTAGGGGGCTTGATAGGTTTAAGAATAAT +TTTTGCTGTGCTATCTATAGTGAATAGAGTCAGGCAGGGATACTCACCTTTGTCGTTGCA +GACCCTTACCCCAAACCCGAGGGAACCCGACAGGCTCGGAGGAATCGAAGAAGAAGGTGG +AGAGCAAGACAGAGACAGATCCATTCGATTAGTGAGCGGATTCTTGCCAATTGTCTGGGA +CGACCTGCGGAGCCTGTGCCTCTTCAGTTACCACCGATTGAGAGACTTTCTATTGCTGGC +AGCGAGAGTGGTGGAACTTCTGGGACGCAGCAGTCTCAGGGGACTGCAGAGGGGGTGGGA +AGTCCTTAAGTATCTGGGAAGTCTTGTGCAGTATTGGGGTCTGGAACTAAAAAAGAGTGC +TATTAGTCTTTTAGATACCATAGCAATAGCAGTAGCTGAAGGAACAGATAGGATTATAGA +AGTAATACAAAGATTTTGTAGAGCTATCCGCAACATACCTACAAGAATAAGACAAGGCCT +TGAAGCATCTTTGCTATAAAATGGGGAGCAAGTGGTCAAAAAGCAGTGTAGTTGGATGGC +CTGCTGTGAGAGAAAGAATAAGAAGAACTGAGCCAGCAGCAGAAGGGGTAGGAGCAGCAT +CTCGAGACTTAGAGGAACATGGGGCACTTACAACCAGTAACACAGTCAGCAACAATGCTG +CTTGTGCCTGGCTGGAGGCACAAGAGGAGGGAGAAGAAGTAGGCTTTCCAGTCAGACCTC +AGGTGCCTTTAAGACCAATGACTTATAAGGCAGCATTTGATCTCGGCTTCTTTTTAAAAG +AAAAGGGGGGACTGGAAGGGTTAATTTACTCTAAGCAAAGGCAAGACATCCTTGATTTGT +GGGTCTATAACACACAAGGTTTCTTCCCTGATTGGCAAAACTACACACCGGGACCAGGGG +TCAGATACCCACTGACCTTTGGGTGGTGCTTCAAGCTAGTGCCAGTCGACCCAAGGGAAG +TAGAAGAGGCCAATAAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCAGGGAA +TGGAGGATGAGCATGGAGAAGTATTAAGATGGAAGTTTGACAGTTCACTAGCACGGAGAC +ACATGGCCCGCGAGCTACATCCGGAGTATTACAAAGACTGCTGACACAGAAGGGACTTTC +CACTGGGACTTTCCACTGGGGCGTTCCAGGGGGAGTGGTCTGGGCGGGACTGGGAGTGGC +CAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTCTAGGTA +GACCAGATCTGAGCCTGGGAGCTCTCTGGCCTCCTAGAGAACCCACTGCTTGGGCCTCAA +TAAAGCTTGCCTTGAGTGTT +>C.ZA.2004.0.04ZASK168B1.AY878058 AY878058 +TCTGTTGTGTGACTCTGGTAATACTCTGGTAACTAGAGATCCCTCAGACCCTTGTTGGTT +GCGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGTAAAACCAG +AGGAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGTGCACTCGGCAAGAGGCGAGAGCG +GCGACTGGTGAGTACGCCGAATTTTATTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGG +TGCGAGAGCGTCAATATTAAGAGGGGAAAATTTGGATAAATGGGAGAAAATTAGGTTAAG +GCCAGGGGGGAAGAAACACTATATGTTAAAACACTTAGTTTGGGCAAGTAGGGAGCTGGA +AAAATTTGCACTTAACCCTGGCCTTTTAGAAACATCAGAAGGCTGTAAACAAATAATGCA +ACAGCTACAACCAGCTCTTCAGACAGGAACAGAGGAACTTAAATCATTATACAACACAGT +AGCAGTTCTCTATTGTGTACATAGAAAGATAGATGTAAAAGACACCAAGGAAGCCTTAGA +CAAGATAGAGGAAGAACAAAACAAAAGTCAGCAAAAAACACAGCAGGCAAAAGCGGCTGA +CGGAAAGGTCAGTCAAAATTATCCTATAGTGCAGAATCTCCAAGGGCAAATGGTACATCA +AGCCATATCACCTAGAACCTTGAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTTAG +CCCAGAGGTGATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAA +TACCATGTTAAATACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGATACCAT +CAATGACGAGGCTGCGGAATGGGATAGATTACATCCAGTACATGCGGGGCCTGTTGCACC +AGGCCAAATGAGAGAGCCAAGGGGAACTGACATAGCAGGAACTACTAGTACCCTTCAGGA +ACAAATAGCATGGATGACAAGTAATCCACCTATTCCAGTGGGAGAAATCTATAAAAGATG +GATAATTCTGGGGTTAAATAAAATAGTGAGAATGTATAGCCCTGTTAGCATTTTGGACAT +AAAACAAGGGCCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTTTAAAACTTTAAG +AGCTGAACAAGCTACACAAGAGGTAAAAGTTTGGATGACAGAAACCTTATTGGTCCAAAA +TGCGAACCCAGATTGTAAGACCATTTTAAGAGGATTAGGAGTAGGGGCTACATTAGAAGA +AATGATGACAGCATGTCAGGGAGTGGGAGGACCTAGCCACAAAGCAAGAGTGTTGGCTGA +GGCAATGAGCCAAGCAAACAATGCAAACATAATGATGCAGAGAAGCAATTTTAAAGGCCC +TAGAAGAGTTATTAAATGTTTCAACTGTGGCAAGGAAGGGCACATAGCCAAAAACTGCAG +GGCCCCTAGGAAAAAAGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGACTG +TACTGAAAGGCAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGGCCAGG +GAATTTTCTTCAGAACAGAACAGAGCCAACAGCCCCATTAGAGCCAACAGCCCCACCAGC +AGAGAGCTTCAAGTTCGAGGAGACAACCCCCACTCCGAAGCAGGGGCCGAAAGACAGGGA +ACCTTTAACTTCCCTCAAATCACTCTTTGGCAGCGACCCCTTGTCTCAATAAAAGTAGAG +GGCCAAATAAAGGAGGCTCTCTTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATA +AATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGATTTATCAAGGTA +AGACAATATGATCAGATATTAATAGAAATTTGTGGGAAAAAGGCTATAGGTACAGTATTA +GTAGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGATGCACA +CTAAATTTTCCAATTAGCCCCATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGAT +GGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAGAAAATAAAAGCATTAACAGCAATT +TGTGAAGACATGGAGAAGGAAGGAAAAATTACAAAAATCGGGCCTGAAAATCCATATAAC +ACTCCAGTATTTGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTC +AGGGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCA +GCAGGGTTAAAAAAGAAAAAATCAGTGACAGTACTAGATGTGGGGGATGCATATTTTTCA +GTGCCTTTAGATGAAGGCTTCAGGAAGTATACTGCATTCACCATACCTAGTATAAACAAT +GAAACACCAGGGATTAGATATCAATATAATGTGCTTCCACAGGGATGGAAAGGATCACCA +GCCATATTCCAAAGTAGCATGACAAAGATCTTAGAGCCCTTTAGAGCAAAAAATCCAGAA +ATAGTCATCTATCAATATATGGATGACCTGTATGTAGGATCTGACTTAGAAATGGGCAAC +ATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTAAAATGGGGATTTACCACACCAG +ACAAGAAACATCAGAAGGAACCCCCATTTCTTTGGATGGGGTATGAACTTCATCCTGACA +AATGGACAGTACAGCCTATACAGTTGCCAGAAAAGGATAGCTGGACTGTCAATGATATAC +AGAAGTTAGTGGGAAAACTAAACTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGC +AACTTTGTAAACTCCTAAGGGGAGCCAAAGCACTAACAGATATAGTACCACTAACTGAAG +AAGCAGAGTTAGAGCTAGCAGAGAACAGGGAAATTCTAAAAGAACCAGTACATGGAGCAT +ATTATGACCCAGCAAAAGACTTAATAGCTGAAATACAGAGACAGGGGTATGACCAATGGA +CATATCAAATTTACCAAGAACCATTCAAAAACCTGAAAACAGGGAAATATGCAAAAATGA +GGACTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCTATGG +AAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCATCCAAAAAGAAACAT +GGGAGACATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTA +ATACCCCTCCCCTAGTAAAATTATGGTACCAGCTAGAGAAAGAACCCATAGCAGGAGCAG +AAACTTTCTATGTAGATGGAGCAGCTAATAGGGAAACCAAAATAGGAAAAGCAGGGTATG +TTACTGACAGAGGAAGGCAGAAAATTGTTACTCTAAGTGAAACAACAAATCAGAAGACTG +AATTACAAGCAATTCAGCTAGCTTTGCAAGATTCAGGATCAGAAGTAAACATAGTAACAG +ACTCACAGTATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAATTAG +TCAACCAAATAATAGAACAATTAATAAAAAAGGAAAGGGTCTACCTGTCATGGGTACCAG +CACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTAAGTAGTGGAATCAGGA +AAGTACTGTTTCTAGATGGAATAGATAAGGCTCAAGAAGAGCATGAAAAGTATCACAGCA +ATTGGAGAGCAATGGCTAGTGGGTTTAATCTGCCACCCATAGTAGCAAAAGAAATAGTAG +CCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATACATGGACAAGTAGACTGTAGTC +CAGGGATATGGCAACTAGATTGTACACACTTAGAAGGAAAAGTCATCCTGGTAGCAGTCC +ATGTAGCCAGTGGCTACATAGAGGCAGAGGTCATCCCAGCGGAAACAGGACAAGAAACAG +CATACTATATACTAAAATTAGCAGGAAGATGGCCAGTCAAGGTAATACATACAGACAATG +GCAGTAATTTCACTAGTGCTGCAGTTAAGGCAGCCTGTTGGTGGGCAGGTATCCAACAGG +AATTTGGGATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAAT +TAAAGAAAATCATAGGGCAGGTAAGAGATCAAGCTGAACACCTTAAGACAGCAGTACAAA +TGGCAGTATTCATTCACAATTTTAAAAGAAGAGGGGGGATTGGGGGGTACAGTGCAGGGG +AAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACGAATTA +CACAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCTATTTGGAAAGGAC +CAGCCAAACTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGACAACAGTGACATAA +AAGTAGTACCAAGGAGGAAGGTAAAAATCATTAAGGACTATGGAAAACAGATGGCAGGTG +CTGATTGTGTGGCAGGTAGACAGGATGAAGATTAGAACATGGAATAGTTTAGTAAAGCAC +CATATGTATGTTTCAAGGAGAGCTAATGGATGGTTTTACAGACATCATTATGAAAGCAGA +CATCCAAAAGTAAGTTCAGAAGTACACATACCATTAGGAGAGGCTAGATTAGTAATAAAA +ACATATTGGGGTTTGCAACCAGGAGAAAGAGCTTGGCATTTGGGTCATGGAGTCTCCATA +GAATGGAGATTGAGAAAATACAGCACACAAGTAGACCCTGGCCTGGCAGACCAGCTAATT +CATATGCACTATTTTGATTGTTTTGCAGAATCCGCCATAAGAAAAGCCATATTAGGACAC +ATAGTTACCCCTAGGTGTGATTATCAAGCAGGACATAACAAGGTAGGATCTCTACAATAC +TTAGCACTGACAGCATTGATAAAGCCAAAAAGGAGAAAGCCACCTCTGCCTAGTGTTAGA +AAATTAGTAGAGGATCGATGGAACAACCTCCAGAGGATCAGGGACCGCAGAGGGAACCAT +ACAATGAATGGACACTAGAGATTCTAGAAGAACTCAAGCAGGAAGCTGTCAGACACTTTC +CTAGACCATGGCTCCATAGCTTAGGGCAGCACATCTATGAAACCTATGGGGATACTTGGA +TAGGAGTTGAAGCAATAATAAGAATACTGCAACAATTACTGTTTATTCATTTCAGAATTG +GGTGCCGGCATAGCAGAATAGGAATCTTGCGACAAAGGAGAGCAAGAAATGGAGCCGGTA +GATCCTAACCTAGAGCCCTGGAACCATCCAGGAAGTCAGCCTAAAACTCCTTGTAATAAG +TGCTATTGTAAACAGTGTAGCTACCATTGTCTAGTTTGCTTTCAGACAAAAGGCTTAGGC +ATTTCCTATGGCAGGAAGAAGCGGAGACGGCGACGAAGCGCTCCTCCAAGCAGTGAGGAT +CATCAAAATCCTATATCAAAGCAGTAAGTATATGTAATGTTAGATTTAATAGGAAAAGTA +GGTTATAGAATAGGGGTAGGAGCATTAATAGTAGCATTAATTATAGCAATAGTTGTGTGG +ACCATAGTATATATAGAATATAGGAAATTGTTAAGACAAAAAAGGATAGACTGGTTAATT +AAAAGAATTAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGAGATAATGAGGAA +TTATCAACAATGGTGGACATGGGGCATCTTAGGCTGTTGGATGTTATTGACTTGTAGTGT +GGTGGGGAACTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAAAAGC +TACTCTATTTTGTGCATCAGATGCTAAGGCATATGAGAAAGAAGTGCATAATGTCTGGGC +CACACATGCCTGTGTACCCACAGACCCCAATCCACAAGAAATGGTTTTGAAAAATGTAAC +AGAAAATTTTAATATGTGGAAAAATGACATGGTGGATCAGATGCATGAGGATATAATCAG +TTTATGGGATCAAAGTTTAAAACCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAA +TTGTACAGATGATATTAAAAGTAATGTTACCTTCAATAACAGCATGATTGGAGAAATAAA +AAATTGCTCTTTCAATACAACCACAGAAATAAGAGATAAGAAACAGAAAGCGTATGCACT +ATTTTATAGAAGTGATGTAGTGCTACTTAATAAGGATAGCAATAGCAATAGCTCTGGTGA +GTACATATTAATAAATTGCAATTCCTCAACCATAACCCAAGCTTGTCCAAAGGTCTCTTT +TGACCCAATTCCTATACATTATTGTGCTCCAGCTGGTTATACGATTCTAAAGTGTAATAA +TAAGACATTCAATGGGACAGGACCATGCAATAATGTCAGTACAGTACAATGTACACATGG +AATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAGGGGAGAT +AATAATTAGGTCTGAAGATTTGACAAAAAATGCCAAAACAATAATAGTACACCTTAAGGA +ATCTGTAGGAATTATGTGTACAAGACCCAACAATAATACAAGAAAGAGTATAAGGATAGG +ACCAGGGCAAGCATTCTATGCAACAAATGGCATAATAGGAGACATAAAACAAGCACATTG +TAACATCAGTGGAGATGAATGGAACAAAACTTTAAAAGGGGTAAGGGAAAAATTAAAGGA +ACATTTCCCTAATAGAACAATAAAATTTGAACCATCCTCAGGAGGGGACCTAGAAATTAC +AACACATAGTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACAGCATTGTTTGA +TGAAAGTATTTTTAATAAAAGTGATTCAAACAGCACCATCACCCTCCCATGCAGAATAAA +GCAAATTATAAACATGTGGCGGAAAGTAGGACGAGCAATGTATGCCCCTCCCATTGAAGG +AAACATAACATGTAAATCAAATATCACGGGACTATTATTGGAACGTGATGGAGGAAAGGT +AAATAATAAAACCGAGATATTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGAAG +TGAATTATATAAATATAAAGTGGTAGAACTTAAGCCATTGGGAGTAGCACCCACTAAGGC +AAAAAGGATAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGACTAGGAGCTGTGTTCTTTGG +GTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGC +CAGACAATTGTTGTCTGGTATAGTGCAGCAGCAAAGCAATTTGCTGAGAGCTATAGAGGC +GCAACAGCATATGTTGCAACTCACGGTCTGGGGCATTAAGCAGCTCCAGGCAAGAGTCCT +GGCTATGGAAAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAA +ACTCATCTGCACCACTACTGTGCCTTGGAACTCCAGTTGGAGTAATAAATCTGAAGCAGA +GATTTGGAATCACACGACCTGGATGCAGTGGGATAGAGAAATCAATAATTACACAGAAAC +AATATACAAGTTGCTTGAAGTCTCGCGGAACCAGCAGGAGCAAAATGAAAAGGATTTATT +AGCACTGGACAAGTGGCAAAATCTGTGGAGTTGGTTTGACATAACAAATTGGCTGTGGTA +TATAAAAATATTTATAATGATAGTAGGAGGCTTGATAGGTTTGAGAATAATTTTTGCTGT +GCTTTCTATAGTGAAAAGAGTTAGGCAGGGATACTCACCTTTGTCGTTTCAGACCCTTAT +CCCAAACCCGAGGGGACCCGACAGGCTCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGA +CAGAAACAAATCCATTCGATTGGTGAACGGATTCTTATCACTTGTCTGGGACGACCTGCG +GAGCTTGTGCCTCTTCAGCTACCACCAATTGAGAAACTTCATATTGGTAACAGCGAGAGC +AGTGGAACTTCTGGGACGCAGCAGCCTCAGGGGACTACAGAGAGGGTGGGAAGCCCTTAA +GTATCTGGGAGGTCTTGTGCAATATGGGGGTCTGGAGCTAAAAAAGAGTGCTATTAGGCT +GCTTGATCGCATAGCAATAGCAGTAGCTGAAGGAACAGATAGGATTATTGAAACAATACA +AATAATCTGGAGAGCTGTCTGCAACATACCTAGAAGAATAAGACAGGGCTTGGAAGCAGC +TTTGCTATAAAATGGGAAGCAAGTGGTCAAAAAGCAGCATAGTTGGATGGCCTAGTGTAA +GAGAAAGAATAAGACAAACTGAGCCAGCGGCAGAGGGAGTAGGAGCAGCGTCTCAAGACT +TAGATAAATATGGGGCACTCACAAGCAGCAACACAGCCCAAAGTAATGCTAATTGTGCCT +GGCTACAAGCACAAGAGGAGGAAGGAGGAGTAGGCTTTCCAGTCAGACCTCAGGTGCCTT +TAAGACCAATGATGTATAAGGCAGCATTCGATCTCAGCTTCTTTTTAAAAGAAAAGGGGG +GACTGGAAGGGTTAATTTGGTCTAAGAAAAGACAAGAAATCCTTGATTTGTGGGTCTATC +ACACACAAGGCTACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATACC +CACTGACCTTTGGATGGTGTTTCAAGCTAGTGCCAGTTGACCCAAGTGAAGTAGAAGAGG +CCAACAAAGGAGAGAACAACTGTTTACTACACCCTATGAGCCAGCATGGAATGGAGGATG +AAGAAAGAGAAGTATTAAAGTGGCAGTTTGACAGCAGTCTAGCACGCAGACACCTGGCCC +GTGAGAAACATCCGGAGTGGTACAAAGACTGCTGACACAGAAGGGACTTTCCGCCTGGGA +CTTTCCACTGGGGCGTTCCAGGGGGTGTGGTCTGGGCGGGACTGGGGAGTGGTCAACCCT +CAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGGTAGACCAGA +TCTGAGCCTGGGAGCTCTCTGGCTATCTAGGGAACCCACTGCTTAAGCCTCAATA +>C.ZA.2000.0.1214MB.AY463236 AY463236 +AGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCATTCGT +GGTAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGTGAAAGTAAGA +CCAGAGGAAATCTCTCGACGCAGGACTCGGCTTGCTGAAGTGCACTCGGCAAGAGGCGAG +AGCGGCGGCTGGTGAGTACGCCAAAATTTATTTGACTAGCGGAGGCTAGAAGGAGAGAGA +TGGGTGCGAGAGCGTCAATACTAAGAGGGGGGAAATTAGATACATGGGAAAAAATCAGGT +TAAGGCCAGGGGGAAAGAAACGTTACAGGCTAAAACACCTAGTATGGGCAAGCAGGGAGC +TGGAAAGATTTGCACTTAACCCTGGCCTTTTAGAGACAGCAGACGGCTGTAAACAAATAA +TACAACAGCTACAACCAGCTCTTCAGACAGGAACAGAGGAACTTAAATCATTATTTAACA +CAGTAGCAACTCTCTATTGTGTACATGCAAAGATAGAGGTAAAAGGCACCAAGGAAGCCT +TAGACAAGATAGAGAAAGAACAACGCAAAAGTCAGCAAAAAACACAGCAAGCGGAAGCGG +CTGACAGAGGACAGAGTAGTCAAAATTATCCTATAGTGCAGAATCTCCAAGGGCAAATGG +TACACCAGGCCATATCACCAAGAACTTTGAATGCATGGGTAAAAGTGATAGAAGAGAAGG +CTTTCAGCCCAGAGGTAATACCCATGTTTACGGCATTATCAGAAGGAGCTACCTCACAAG +ATTTAAACACCATGTTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAG +ATACCATCAATGAGGAGGCTGCAGAATGGGATAGGTTACATCCAGTACATGCAGGGCCTA +TTGCACCAGGCCAAATGAGAGAACCAAGGGGAGGTGACATAGCAGGAACTACTAGTACCC +TTCAGGAACAAATAGCATGGATGACAAGTAACCCACCTATTCCAGTAGGAGACATCTATA +AAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGTCCTGTCAGCATTT +TGGACATAAAACAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTTTAAAA +CTTTAAGAGCTGAACAATCCACACAAGAGGTAAAAAATTGGATGACAGACACCTTGTTGG +TCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAGAGCATTAGGACCAGCGGCTTCAT +TAGAAGAAATGATGACAGCATGCCAAGGAGTGGGAGGACCTAGCCACAAAGCAAGAGTTT +TAGCTGAGGCAATGAGCCAAGCAGGCAATACAAATATAATGATGCAGAGAGGCAACTTTA +AAGGCCCTAGAAGAATTATCAAATGTTTCAACTGTGGCAAGGAAGGGCACATAGCCAGAA +ATTGCAAGGCCCCTAGGAAAAAAGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGA +AAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAAGGGAAGGC +CAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGT +TCGAGGAGACAACCCCTGCTCCGAAGCAGGAGCAGAAAGACAAGGAGCCACCCTTAGCTT +CCCTCAAATCACTCTTTGGCAACGACCCCTTGTCTCAATAAAAGTAGGGGGTCAGACAAA +GGAAGCCCTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGG +AAAATGGAAACCAAAAGTGATAGGAGGAATTGGAGGTTTTATCAAAGTAAGGCAGTATGA +TCAAATAGTTATAGAAATTTGTGGAAAAAAGGCTATAGGTTCAGTATTAGTGGGACCTAC +ACCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGATGCACACTAAATTTTCC +AATTAGTCCCATTGAAACTGTACCAGTGAAATTAAAGCCAGGAATGGATGGCCCAAAAGT +TAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGCAATTTGCGAAGAAAT +GGAGAAGGAAGGAAAAATTACAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATT +TGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAA +TAAAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCACACCCAGCAGGGTTAAA +ACAGAAAAAATCAGTGACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGA +TGAGAATTTCAGGAAGTACACTGCATTCACCATACCTAGTATAAACAATGAAACACCAGG +AATTAGATATCAATATAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTCCA +AAGTAGCATGACAAAAATCTTAGAGCCCTTTAGGACAAGAAACCCAGACATAGTTATCTA +TCAATATATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAA +AATAGAGGAGTTAAGAGAACATTTATTGAAATGGGGACTCACCACTCCAGACAAGAAACA +TCAAAAAGAGCCCCCATTTCTGTGGATGGGGTATGAACTCCATCCTGATAAGTGGACAGT +ACAGCCTATACATCTGCCAGAAAAAGAGAGCTGGACTGTCAATGATATACAGAAGTTAGT +GGGAAAATTAAACTGGGCGAGTCAGATTTACGCAGGGATTAAAGTAAAACAACTATGTAA +GCTCATTAGAGGAACCAAAGCACTAACAGACATAGTACCACTGACTGAAGAGGCAGAATT +AGAATTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGATCC +ATCAAAAGACTTAATAGCTGAACTACAGAAACAGGGACATGACCAGTGGACATATCAAAT +TTACCAAGAACCATTTAAAAATCTGAAAACAGGGAAGTATGCAAGAATGAGGACTGCCCA +CACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAGATAACTATGGAAAGTATAGT +AATATGGGGAAAGACTCCTAAATTTAGACTACCCATCCAAAAAGACACATGGGAGACATG +GTGGACAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCC +CCTAGTAAAACTATGGTACCAGCTAGAGAAGGAACCCATAGCAGGAGCAGAAACTTTCTA +TGTAGATGGAGCAGCTAATAGGGATACTAAAATAGGAAAAGCAGGGTATGTTACTGACAG +AGGAAGACAGAAAATTGTTCCTCTAACTGAAACAACAAATCAGAAGACTGAACTGCAAGC +AATTCAGATAGCTTTGCAGGATTCAGGACCAGAAGTAAACATAGTAACAGATTCACAGTA +TGCATTAGGCATCATTCACGGACTACCAGATAAGAGTGAATCAGAGTTAGTTAATCAAAT +AATAGAACAATTGATAAACAAGGAAAGAGTCTACCTGTCATGGGTACCAGCACATAAAGG +AATTGGAGGAAATGAGCAAGTAGACAAATTAGTAAGTAGGGGAATTAGAAAAGTGCTGTT +TCTAGATGGGATAGATAAGGCTCAAGAAGACCATGAAAAACATCACAGCAATTGGAGAGC +AATGGCTAATGAGTTTAATCTGCCACCCATAGTAGCAAAAGAAATAGTAGCTAGCTGTGA +TAAATGTCAGATAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGGATATG +GCAATTAGATTGTACACATTTAGAAGGAAAAGTCATTCTGGTAGCAGTCCATGTAGCCAG +TGGCTACATAGAAGCAGAGGTATTCCAGCAGAAACAGGACAAGAAACAGCATACTATATA +CTAAAATTAGCAGGAAGATGGCCAGTCAAAGTAATACACACAGACAATGGCAGTAATTTC +ACCAGTACTGCAGTAAAGGCAGCTCTGTTGGTGGGCAGGTATCCAACAGGAATTTGGGAT +TCCCTACAATCCCCAAAGTCAGGGAGTGGTAGAATCCATGAATAAAGAATTGAAGAAAAT +CATAGGGCAAGTAAGAGATCAAGCTGAGCACCTTAAGACAGCAGTACAAATGGCAGTATT +CATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAAT +AGACATGATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATCATAAAAATTCA +AAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCTATTTGGAAAGGACCAGCCAAACT +ACTCTGGAAAGGTGAAGGGGCAGTAGTTATACAAGATAGCAGTGACATAAAGGTGGTACC +AAGGAGGAAAGTAAAAATCATTAAGGACTATGGAAAACAGATGGCAGGTGCTGATTGTGT +GGCAAGTAGACAGGATGAAGATTAGAACATGGAATAGTTTAGTAAAGCACCATATGTATA +TTTCAAGGAAAGCTAAGGGATGGTTTTACAGACATCATTATGAAAGCAGGCATCCAAAAG +TAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAGATTAGTAATAAAAACATATTGGG +GTTTGCAGACAGGAGAAAGAGAGTGGCATTTGGGTCATGGAGTCTCCATAGAATGGAGAT +GGAAAAGATATAGCACACAGGTAGACCCTGGCCTGGCAGACCAACTAATTCATATGCATT +ATTTTGATTGTTTTGCAGACTCTGCCATAAGACAAGCCATCTTAGGACATATAGTTAGCC +CTAGGTGTAACTATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTGA +CAGCATTGATCAAGCCAAAAAAGATAAAGCCACCTCTGCCTAGTGTTCAGAAATTGGTAG +AGGATAGATGGAACAAGCCCCAGAAGACCAGGGGCCGCAGAGGGAACCATACAATGAATG +GGCACTAGAGCTTTTAGAAGATCTTAAGCAGGAAGCTGTCAGACACTTTCCTAGACCATG +GCTCCATAGCTTAGGACAGCACATCTATGAAACCTATGGGGATACTTGGACGGGAGTCGA +AGTGATAATAAGAATTCTGCAACAATTACTGTTTATTCATTTCAGAATTGGGTGCCAGCA +TAGCAGAATAGGCATTTTGCGACAAAGAAGAGCAAGAAATGGAGCCAATAGATCCTAAAC +TAGAACCCTGGAAACATCCAGGGAGTCAGCCTAAAACTGCTTGCAATAGGTGTTATTGCA +AACGCTGCTGCTATCATTGTCTAGTTTGCTTTCAGACAAAAGGCTTAGGCATTTCCTATG +GCAGGAAGAAGCGGAGACAGCGACGAAGCGCTCCTCCAAGCAGTGAAGATCATCAAGATC +CTATACCAAAGCAGTAAGTACTAAATGGTAGATGTAATGTTAAATTTACTAGCAAGAGTA +GATTATAGATTAGGAGTAGGAGCATTGATAGTAGCACTAATTATAGCAATAGTTGTGTGG +ATCATAGCATATATAGAATATAAGAAACTGGTAAGGCAGAGAAGAATAGACAAGCTAGTT +GAAAGAATTAGGGAAAGAGAAGAAGACAGTGGCAATGAGAGTGATGGGGATGTTGAGGAA +TTGTCAACAATGGTGGATATGGAGCATCTTAGGCTTATGGATGTTAATAATTTGTAATGG +GGACAATTTGTGGGTCACTGTCTACTATGGGGTACCTGTGTGGAAAGAAGCACAAACTAC +TCTATTTTGTGCATCAGATGCTAAAGGATATGAAAAAGAAGTGCATAATGTCTGGGCTAC +ACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAATGGTTTTGGCAAATGTAACAGA +AAATTTTAATATGTGGAAAAATGACATGGTAGATCAGATGCATGAGGATATAATCAGTTT +ATGGGATCAAAGCTTAAAGCCATGTGTAAAGTTGACCCCACTCTGCGTCACTTTAAACTG +TACTAATGTCACCTGTACTGATAACAGCACCTGTAAGGGTAACACAAGTGAAATAAAAAA +TTGCTCTTTCGACACAACCTCAGAAATGGAAGATAAGAAGAAAAGACAGAATGCACTTTT +CTATGCACTTGATATAGTCCCACTTAATAACAATAGTAGTGAATATAGAATAATAAGTTG +TAATACCTCAACCATAGCACAAGCCTGTCCAAAGATCTCTTTTGACCCAATTCCTATACA +TTATTGTGCTCCAGCTGGTTATGCGATTCTAAAGTGTAATAATAAGACATTCAATGGAAC +AGGACCATGCAATAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTGGTATC +AACTCAGCTACTGTTAAATGGCAGCCTAGCAGAAGAAGAGATAATAATTAGATCTGAAAA +TATTACAGACAATGTCAAAACAATAATAGTACACCTTAAGGATGCTGTAGAAATTGTGTG +TATAAGACCCGGCAATAATACAAGAACCAGTGTGAGGATAGGCCCAGGACAGACATTCTA +TGCAACAGGAGACATAATAGGAGATATACGACAAGCACATTGTAACATTACTGAAAGCAA +GTGGAATAACACTTTAAAAAAGGTAACAGGAAAATTAGGAGAATACTTCCCTAATCGAAC +AATACAATTTGCACCATCCTCAGGAGGAGATTTAGAAATTACAACACATAGCTTTAATTG +TGGAGGAGAATTTTTCTATTGCGATACAGCAGCCCTGTTTAATGGCACATATAATGGCAC +ATATGGTAATGAGACTTCAAACATCACACTCCAATGCAGAATAAAACAGATGATAAACAT +GTGGCAGGGGGTAGGACGAGCAATGTATGCTCCTCCCATTGCAGGAAACATAACATGTAG +ATCGAATATCACAGGACTACTATTGACACGTGATGGAAGTAACGATACTGGGCCAGAGAT +ATTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAA +AGTGGTAGAAATTAAGCCATTAGGAATAGCACCCACTAAAGCAAAAAGGAGAGTGGTGGA +GAGAGAGAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTAGGAGCAGCAGG +AAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGG +TATAGTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCGCAACAGCATATGTTGCA +ACTCACAGTCTGGGGCATTAAACAGCTCCAAGCAAGAGTCCTGGCTATAGAAAGATACCT +AAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACCAC +TGTATCTTGGAACTCCAGTTGGAGTAATAAAACTTACGATGAAATTTGGGAAAACATGAC +CTGGATGCAGTGGGAGAGAGAAATCAGTAATTACACAAACACAATATATAGGTTGCTTGA +AGACTCGCAAAACCAGCAGGAAAAAAATGAACAAGATTTACTAGCATTGGACAGTTGGGC +AAGTCTGTGGAATTGGTTTAGCATAACAAAATGGCTGTGGTATATAAAAATATTCATAAT +GATAGTAGGAGGCTTGATAGGTTTAAGAATAATTTTTGCTATACTCTCTATAGTAAATAG +AGTTAGGCAGGGATACTCACCTTTGTCGTTTCAGACCCTTACCCCAAACCCGAGGGAACT +CGACAGGCCCGAAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGACAGATCCATACG +ATTAGTGAGCGGATTCTTGTCACTTGCCTGGGACGATCTGCGGAGCCTGAGCCTCTTCAG +CTACCGCCAATTGAGAGACTTCATATTGGTGATAGTGAGAGTAGTGGAACTTCTGGGACG +CAGCAGTCTCAGGGGACTACAGAAGGGGTGGGAAACCCTTAAGTATTTGGGAAGTCTTGT +ACAGTATTGGGGTTTAGAGTTAAAAAGGAGTGCTATTAGTCTGCTTGATACCATAGCAAT +AGTAGTAGCTGAGGGAACAGATAGGATTATAGAATTAATACAAAGAATTTGGAGAGCTAT +CTGCCACATACCTACAAGAATAAGACAGGGCTTTGAAGCAGCTTTGCAATAAAATGGGGG +GCAAGTGGTCAAAAAGCAGTATAGTTGGATGGCCTGCTGTAAGAGAAAGAGTCAGAAGAA +CTCAGACAGGAACAAGAATCAGAAGAACTCAGACAGCAGCAGAGGGAGTAGGAGCAGCAT +CTCAAGACCTAGATAAACATGGGGCACTTACAACCAGTAACACAGCCACTAACAATGCTG +CTTGTGCCTGGCTGGAAGCACAAGAGGAGGAAGAAGAAGTAGGTTTTCCAGTCAGACCTC +AGGTACCTCTAAGACCAATGACTTATAAGGCAGCAGTTGATCTCAGCTTCTTTTTAAAAG +AAAAGGGGGGACTGGAAGGGTTAATTTACTCCAAGAAAAGGCAAGATATCCTTGATTTAT +GGGTCTATAACACACAAGGTTTCTTCCCTGATTGGCAAAACTACACACCGGGACCAGGGG +TCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCTGTTGACCCAAGGGAAG +TAGAAGAGGCCAATGAAGGAGAAAACAACTGTTTGCTACACCCTATGAGCCAGCAGGGAA +TGGAGGATGATGACAGAGAAGTACTAATGTGGAAGTTTGACAGTCTCCTAGCACGCAGAC +ACATGGCCCGCGAGCTACATCCGGAGTATTACAAAGACTGCTGACACAGAAGGGACTTTC +CGCTGGGGCTTTCCACTGGGGCGTTCCGGGAGGTGTGGTCTGGGCGGGACTGGGGAGTGG +CCAGCCCTTGAATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTCTAGGT +AGACCAGATCTGAGCCTGGGAGCTCTCTGGCTATCTAGGGAACCCACTGCTTAAGCCTCA +ATAAAGCTTGCCTTGAGTGCTTA +>C.BR.2004.0.04BR021.AY727523 AY727523 +AAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACGCCTTT +CGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGTAAG +ACCAGAGGAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGTGCACTCGGCAAGAGGCGA +GAGCGGCGACTGGTGAGTACGCCATTTTTATTTGACTAGCGGAGGCTAGAAGGAGAGAGA +TGGGTGCGAGAGCGTCAGTATTAAGAGGCGAAAAGTTAGATAATTGGGAAAAAATTAAGT +TAAAGCCAGGGGGAAAGAAATGCTATATGATGAAACACCTAGTCTGGGCAAGCAGGGAGC +TGGAAAGATTTGCACTTGACCCTGGCCTTTTAGAGACATCAGAAGGCTGTAAACAAATAA +TAAGGCAGCTACAACCAGCTCTTCAGACAGGAACAAAGGAACTTATATCATTATATAACA +CAGTTGCAACTCTCTATTGTGTACATGCAAAGATAGAGATACGAGACACCAAGGAAGCCT +TAGACAAAATAAAGGAAGAACAAAACAAAAGTCAGCAAAAAACACAGCAGGCAGAAGCGG +CTGACAAAGGAAAGGTCAGTCAAAATTATCCTATAGTGCAGAATATCCAAGGGCAAATGG +TACACCAGCCCATATCAGCTAGAACTTTGAATGCATGGGTAAAGGTAATAGAAGAGAAGG +CTTTCAGCCCAGAGGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAG +ATTTAAACACCATGTTAAATACAGTGGGGGGACACCAAGCAGCCATGCAAATGTTAAAAG +ATACCATCAATGAAGAGGCTGCAGAATGGGATAGATTACATCCAGTGCATGCAGGGCCTG +TCGCACCAGGCCAACTGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACCAGTACCC +TTCAGGAACAAATAGCATGGATGACAAATACCCCACCTGTCCCAGTAGGAGACATCTATA +AAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTT +TGGACATAAAACAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTTTAAAT +GCTTAAGAGCAGAACAAGCTACTCAAGATGTAAAAAATTGGATGACAGATACCTTGTTGG +TCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAAGCATTAGGGACAGGGGCTACAT +TAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCACAAAGCAAGAGTGT +TGGCTGAGGCAATGAGCCAAGTAAACAATACAAACATAATGATGCAGAGAAGCAATTTTA +AGGGCCCTAAAAGAACTATCAAATGCTTCAACTGTGGTAAGGAAGGGCACTTAGCCAGAA +ATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGA +AAGACTGTACTGAGAGGCAGGCTAATTTTTTAGGGAGAATTTGGCCTTCCCACAAGGGGA +GGCCAGGAAATTTCCCCCAGAGCAGACTAGAGCCAACAGCCCCACCAGAAGAGAGCTTCA +GGTTCGAGGAGACAACCCCCTCTCCGAAGCAGGAGCCGAAAGACAGGGAACCCTTAACTT +CCCTCAAATCACTCTTTGGCAGCGACCCCTCGTTACAATAAAAGTAGGGGGACAGCTAAA +GGAGGCTCTTTTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAAATTGCCAGG +AAATTGGAAACCAAAAATGATAGGAGGAATTGGGGGTTTTATCAAAGTAAGACAGTATGA +TCAAATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTACTAGTAGGACCTAC +ACCTGTCAACATAATTGGAAGAAACATGTTGACTCAGCTTGGATGTACACTAAATTTTCC +AATCAGTCCCATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGGT +CAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGCAATTTGTGAAGAAAT +GGAAAAGGAAGGAAAAATTACAAAAATTGGTCCTGAAAATCCCTATAACACTCCAGTATT +TGCTATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAA +TAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGGATACCACACCCATCAGGGTTAAA +AAAGAAAAAATCAGTGACAGTACTGGATGTGGGGGATGCATATTTTTCAGTACCTTTAGA +TGAAAACTTTAGAAAATATACTGCATTTACCATACCTAGTATAAACAATGAAACACCAGG +GGTTAGATATCAATATAATGTGCTTCCACAGGGATGGAAAGGATCACCATCAATATTCCA +GAGTAGCATGACAAGAATCTTAGAGCCCTTTAGGGCACAAAATCCAGAAATAGTTATATA +TCAATATATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAA +AATAGAGGAGTTAAGAGAACATCTATTGAAGTGGGGATTCACCACACCAGACAAGAAACA +TCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGT +ACAGCCTATACAGCTGCCAGAAAAGGATAGCTGGACTGTCAATGATATACAGAAGTTAGT +GGGAAAATTAAACTGGGCAAGTCAGATTTACCCAGGAATTAAAGTAAGACAACTGTGTAA +ACTCCTTAGGGGAGCCAAAGCATTAACAGACATAGTACCACTGACTGAAGAAGCAGAATT +AGAATTGGCAGAGAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCC +ATCAAAAGACTTAATAGCTGAAATACAGAAACAGGGGCAGGACCAATGGACATATCAAAT +TTACCAAGAACCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGTACTGCCCA +CACTAATGATGTAAGACAGTTAACAGGGGCAGTGCAAAAAATAGCCCAGGAATGCATAGT +AATATGGGGAAAAACTCCTAAATTTAGATTACCCATCCAGAAAGAAACATGGGAGGCATG +GTGGACAGACTATTGGCAAGCCACATGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCC +CCTAGTAAAGTTATGGTACCAGCTGGAGAAAGAACCCATAGCAGGAGCAGAAACTTTCTA +TGTAGATGGAGCAGCTAATAGGGAAACTAAAATAGGAAAAGCAGGGTATGTTACTGACAG +AGGAAGGCAGAAAATTGTTCCTCTAACTGAAACAACAAATCAAAAGACTGAGTTACAAGC +AATTCAACTAGCTTTACAGGACTCAGGATCAGAAGTAAACATAGTAACAGACTCACAGTA +TGCATTAGGAATTATTCAAGCACAACCAGACAAGAGTGAGTCAGAATTAGTCAATCAAAT +AATAGAACAGTTAATAAAAAAGGAAAGGGTCTACCTGTCATGGGTACCAGCACACAAAGG +AATTGGGGGAAATGAACAAGTAGATAAATTAGTAAGTAATGGAATCAGGAAAGTGCTGTT +TCTAGATGGAATAGATAAAGCTCAAGAAGAGCATGAAAAATATCACAGCAATTGGAGAGC +AATGGCTAGTGAGTTTAATCTGCCCCCCGTAGTAGCAAAAGAAATAGTAGCTAGCTGTGA +TAAATGTCAGCTAAAAGGGGAAGCCATACATGGACAAGTAGACTGTAGTCCTGGAATATG +GCAATTAGATTGTACCCATTTAGAAGGAAAAATCATCCTGGTAGCAGTCCATGTGGCCAG +TGGATACATAGAAGCAGAGGTTATCCCAGCAGAAACAGGACAAGAAACAGCATACTTTAT +ACTCAAATTAGCAGGAAGATGGCCAGTCAAAATAATACATACAGACAATGGCAGTAATTT +CACCAGTAATACAGTTAAAGCAGCCTGTTGGTGGGCAGGTATCCAACAGGAATTTGGAAT +TCCCTACAATCCCCAAAGTCAGGGAGTAGTAGAATCAATGAATAAAGAGTTAAAGAAAAT +CATAGGACAAGTAAGAGATCAAGCTGAGCACCTTAAGACAGCAGTACAAATGGCAGTATT +CATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAAT +AGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCA +AAATTTTCGGGTTTATTACAGAGACAGCAGAGATCCTATTTGGAAAGGACCAGCCAAACT +ACTCTGGAAAGGTGAAGGGGCAGTAGTACTACAAGATAACAGTGACATAAAGGTAGTACC +AAGGAGGAAAGTAAAAATCATTAAGGACTATGGAAAACAGATGGCAGGTGCTGATTGTGT +GGCAAGTAGACAGGATGAAGATTAGAACATGGAATAGTTTAGTAAAGCACCACATGTATA +GGTCAAAGAGAGCTAGTGGATGGTATTATAGACATCATTATGAAAGCAGACATCCAAAAA +TAAGTTCAGAAGTACACATCCCATTAGGGGAGGCTAGATTAGTAATAACAACATATTGGG +GGTTGCAAACAGGAGAAAGAGATTGGCATTTGGGTCATGGAGTCTCCATAGAGTGGAGAC +TGAGAAAATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCATGTGCATT +ATTTTGATTGTTTTGCAGACTCTGCCATAAGGAAAGCCATATTAGGACATAGAGTTAGCC +CTAGGTGTGACTATCAAGCAGGACATAATAAGGTAGGATCTCTACAATACCTGGCACTGA +CAGCATTGATAAAACCAAAAAAGACAAAGCCACCTCTGCCTAGTGTTAGCAAATTAGTAG +AGGATAGATGGAACAAGCCCCAGAAGACCAGGGACCGCAGAGGGAACCATTCAATGAATG +GACACTAGAACTTTTAGAGGAACTAAAACGGGAAGCTGTCAGACACTTTCCTAGACCATG +GCTTCATAGCTTAGGACAATATATCTATGAAACCTATGGGGATACTTGGACGGGAGTGGG +AGCTATAATAAGAATTCTGCAACAACTACTGTTTGTCCATTTCAGAATTGGGTGCCAGCA +TAGCCGAATAGGCATTATAAGACAGAGAAGAGCAAGAAATGGAGCCAGTAGACCCTAACC +TAGAGCCCTGGAACCATCCAGGAAGTCAGCCTAAAACCCCTTGCAATAGGTGCTATTGTA +AAAGCTGCAGCTATCACTGTCAAGTTTGCTTTCTGACAAAAGGCTTAGGCATTTCCTATG +GCAGGAAGAAGCGGAGACAACGACGAAGCGCTCCTCCAAGCAGTGAGGATCATCAAAATC +TTATATCAAAGCAGTAAGTATTCAGTAGTAGATGCAAATATTCAGTAGTAGATGTAATGT +TAGAAGAAATAGATTATAGATTAGGAGTAGGAGCATTGATAGTAGCACTGATCATAGCAA +TAGTTGTGTGGATCATAGCTTATATAGAATATAGGAAATTGGTAAGACAAAGAAGAATAA +ACTGGTTAATTGAAAGAATTAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGTG +ATACAGAGGAATTGGAAACAATGGTGGATATGGGGAATCTTAGGCTTTTGGATGTTAATG +ATGTGTAATGTGATGGGGAACTTGTGGGTCACAGTATATTATGGGGTACCTGTGTGGAGA +GAAGCAAAAGCCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAAGTGCAC +AATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCCAATCCACAAGAAATGTTTTTG +GAAAATGTAACAGAAAATTTTAACATGTGGGACAATGACATGGTGGATCAGATGCATCAG +GATATAATCAGTTTATGGGATCAAAGCCTAAAACCATGTGTAAAGTTGACCCCACTCTGT +GTTACTTTAAACTGCACGAATGCGGAGGGTAACAGCACTACTACTAACAGAACTAGTAAC +AGCACTACTACTAACAGCACTAGTAGTAAAAATGATACCATGAGGGGAGAAATAAAAAAG +TGTTCTTTCAATATGACCACAGAACTAAAAGATAAGAGCAAAAAGGTACATGCACTTTTT +TATAGACTTGATATAGTACCAATTAATACTACGGAGAGTAATAGAACTTATGAGAATTAT +AGATTAATAAATTGTAATACCTCAACCATAGCACAAGCCTGTCCAAAGATCACTTTTGAC +CCAATTCCTATACATTATTGTGCTCCAGCGGGTTATGCGATTCTAAAGTGTAATGAGAAG +ACATTCAATGGAACAGGACCATGCAAAAATGTCAGTACAGTACAATGTACACATGGAATT +AAGCCAGTGGTATCAACTCAACTACTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAATA +ATTAGATCTAAAAATCTAACAGACAATGCTAAAACAATAATAGTACAACTTAAGGAACCT +GTAGAAATTACTTGTACAAGACCCAACAATAATACAAGAGAAAGTATAAGAATAGGACCA +GGACAAACATTCTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCATATTGTACC +CTTAATGAAACAACATGGAATAGAACTTTACAAGCAGTAGGAGAAAAATTAGCAGAGCAC +CTCAATAAAACAACAATAAAATTTGCAAACCACTCAGGAGGAGACTTAGAAGTTGTAACA +CATAGCTTTAATTGTGGAGGAGAATTTTTCTATTGTAATACAACAGGCCTGTTTAATGGT +ACATACATAAAAAATTCTAATGCAACAGGAAACATTACTAGAAACATCACAATCCCATGC +AGAATAAAACAAATTATAAACATGTGGCAGAAGGTAGGACGAGCAATGTATGCCCCTCCC +ATTCGAGGAATAATAACCTGTAGGTCAAATATCACAGGACTACTACTGACACGTGATGGA +GGAGAGAATGATACAGAGACAGTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGA +AGTGAATTATATAAATATAAAGTGGTAGAAATTAAACCATTAGGAATAGCACCCACTAAG +GCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTT +GGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAG +GCCAGACAATTGTTGTCTGGGATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAG +GCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGACAAGAGTC +CTGGCTATAGAAAGATACCTAAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGA +AAACTCATCTGCACCACTGCTGTGCCTTGGAACTCTAGTTGGAGTAATAAATCTCAAAGT +ACTATTTGGAATAACATGACCTGGATGCAGTGGGATAGAGAAATTAATAATTACACAGGC +ATAATATACAGTTTGCTTGAAGAATCGCAAAACCAGCAGGAGAAAAATGAACAGGATTTA +TTAGCATTGGACAAGTGGCAAAGTCTGTGGAATTGGTTTGGTATAACAAAATGGCTGTGG +TACATAAAAATATTCATAATGATAGTAGGAGGCTTAATAGGGTTAAGAATAATTTTTGCT +GTGCTCTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCCTTGTCGTTTCAGACCCTT +ATCCCAAACCCGAGGGGACCAGACAGGCCCGGAGGAATCGAAGAAGAAGGTGGAGAGCAA +GACAGAGACAGATCCGTTCGATTAGTGAGCGGATTCTTGGCGCTTGCCTGGGACGACCTG +CGGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGGGACTTACTATTAATTGCAGCGAGG +ACGGTGGAACTTATGGGACGCAGCAGCCTCAGGGGATTACAGAGGGGGTGGGAAATCCTT +AAGTATTTAGGAAGCCTTGTGCAGTATTGGGGTCTAGAGCTAAAAAAGAGTGCTATTAGT +GTGCTTGATGCCACAGCAATAGCAGTAGCTGAAGGAACAGATAGGATTATAGAAGCAATA +CAAAGAGTTTGGAGAGGCATCTGCAACATACCTAGAAGAATAAGTCAGGGCTTTGAAGCA +GCTTTGCAATAAAATGGGAAACAAATGGTCAAAATGTAGTCCAGTGGGATGGCCTGCTAT +AAGAGAGAGAATAAGACGAGCTGAGCCAGCAGCAGAGGGAGTAGGACCAGCGTCTCAAGA +CTTAGATAGATATGGGGCACTGACAAGCAGCAACACCCCTGCCAATAATGCTGATTGTGC +CTGGTTGGAAGCGCAACAGGAGGAAGAAGAGGTAGGCTTTGTAAGACCAATGACTTATAA +GGCAGCATTCGATCTCAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTA +CTCCAAGAAAAGGCAAGACATCCTTGATTTGTGGGTCTATAACACACAAGGCTACTTCCC +TGATTGGCAAAACTACACACCAGGACCAGGAGTCAGATTTCCCCTGACCTTTGGATGGTG +CTTCAAGCTAGTGCCAGTTGACCCAAGGGAAGTGGAAGAGGCCAATGCAGGAGAGACCAA +CTGCTTGCTACACCCTATGAGCCTACAGGGAATGGAAGATGACCACGGTGAAGTATTACA +GTGGAAGTTTGACAGTATGCTAGCACGCAGACACGTGGCCCGCGAGCTACATCCGGAGTA +TTACAAAAACTGATGACACAGAAGGGACTTTCCGCTGGGACTTTCCACTGGGGCGTTCCA +GGAGGAGTGGTCTGGCGG +>D.CM.2001.0.01CM_0009BBY.AY371155 AY371155 +GCGAGAGCGTCAGTATTAAGCGGAGGAAAATTGGATGCATGGGAGAAAATTCGGTTACGG +CCAGGGGGACGCAAAAGGTATAGGCTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAA +CGATTTGCACTTAATCCTGGCCTTTTGGAAACATCAGAGGGCTGTAAACAAATAATAAGC +CAGTTGCAGCCATCTCTTAAGACAGGATCAGAAGAGCTTAGATCATTATTTAATACAGTA +GCAACACTCTATTGTGTACATAACAGAATAGAGGTAAAAGACACCAAAGAAGCTTTAGAT +AAGATAGAGGAAGAACAGAAAAAAGCACAGCAAGCAGCAGCTAACAAAGGAAACAACAGC +CAGGTCAGCCAAAATTACCCTATAGTGCAGAACTTACAGGGACAAATGGTACATCAAGCC +ATATCACCTAGAACCTTGAACGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAACCCA +GAAGTAATACCCATGTTTTCAGCGTTAGCAGAAGGAGCCACCCCACAAGATTTAAACACC +ATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAAT +GAGGAAGCTGCAGAATGGGACAGGCTACATCCAGTGCATGCAGGGCCCGTTGCACCAGGC +CAGATGAGAGAACCAAGGGGAAGTGATATTGCAGGAACTACTAGTACCCTTCAGGAACAA +ATGGCATGGATAACAGGCAATCCACCTGTCCCGGTAGGGGAAATCTATAAGAGATGGATA +ATCTTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGTATTTTGGATATAAGA +CAAGGACCAAAAGAGCCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCC +GAACAAGCTTCACAAGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTTCAAAATGCA +AACCCAGACTGTAAAACTATCTTAAAGGCATTGGGACCAGGAGCTACATTAGAAGAAATG +ATGACAGCATGTCAGGGAGTGGGAGGGCCCAGCCATAAAGCAAGAGTCTTGGCTGAGGCA +ATGAGCCAAGCAACAGGTGCCTCTGCTGCAATAATGATGCAGAAAGGCAATTTTAAGGGC +CCAAGGAGAACTGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCACATAGCAAAAAATTGC +AGGGCTCCTAGGAAAAAGGGTTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAT +TGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCCACAAGGGAAGGCCG +GGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAATAGAGAGCTTCGGGTTT +GGGGAAGAGGTAACCCCCTCTCAGAAACAGGAGCAGAAGGACAAAGACAAGGAACTGTAT +CCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAATAAAAGTAGGGG +GACAGTTAAAAGAAGCTCTACTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAA +ATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAA +GACAGTATGATCAGGTACCTATAGAAATCTGTGGACAGAAGGCTATAGGTACAGTATTAG +TAGGACCTACACCTGTCAACATAATTGGAAGAAATTTGTTGACCCAGATTGGCTGCACTC +TAAATTTTCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATG +GCCCAAAAATTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTT +GTACAGAAATGGAAAAGGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATA +CTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAGTGGAGAAAGTTAGTAGATTTCA +GAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCGCATCCCG +CAGGGCTGAAAAAGAAAAAATCAGTAACAGTACTGGATGTAGGTGATGCATACTTTTCAG +TTCCCTTAGATAAAGATTTTAGGAAGTACACTGCATTCACCATACCTAGTACAAACAATG +AGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAGGGCTCACCAG +CAATATTCCAATGTAGTATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAAC +TAATTATCTATTCATACATGGATGATTTGTATGTAGGATCTGATTTAGAGATAGGGCAGC +ATAGATCAAAAATAGAAGAATTAAGAGAACATTTATTGAAGTGGGGACTTACCACACCAG +ATAAGAAACATCAGAAAGACCCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATA +AATGGACAGTACAGCCTATAAAACTGCCAGAAAAAGAAAGCTGGACTGTCAATGATATAC +AGAAGTTAGTGGGAAAATTAAATTGGGCAAGCCAGATTTATTCAGGAATTAAAGTAAAGC +AATTATGTAAACTCCTTAGGGGAGCTAAAGCATTAACAGAGGTAATACCACTAACAAAAG +AAGCAGAATTAGAACTAGCAGAAAACAGGGAGATTCTCAGAGAACCAGTACATGGAGTGT +ATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAACAAGGGGAAAGCCAATGGT +CTTGGCAAATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAAAATGA +AGAGTGCCCATACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAG +AAAGCATAATAATATGGGGAAAGATTCCTAAATTTAGACTACCCATACAAAAAGAAACAT +GGGAAGCATGGTGGATGGAGTATTGGCAGGCCACTTGGATTCCTGAGTGGGAGTTTGTCA +ATACCCCTCCTTTAGTGAAATTGTGGTATCAGTTAGAGAAGGAACCCATAATAGGAGCAG +AAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATG +TTACTGACAAAGGAAGACAGAAAGTTGTCCCGTTTACTGACACTACTAATCAGAAGACTG +AGTTACAAGCAATTAATCTAGCTTTGCAGGATTCGGGGTCAGAAGTGAACATAGTAACAG +ATTCACAATATGCATTAGGAATCATTCAAGCACAACCAGACAAGAGTGAATCAGAATTAG +TCAGTCAAATAATAGAAGAGTTAATAAAAAAGGAAAAGGTCTACCTAGCATGGGTACCAG +CACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAGCGGAATTAGAA +AAGTACTATTTTTGGATGGAATAGATAAAGCTCAAGAGGAACATGAAAAATATCACAGCA +ATTGGAGAGCAATGGCTAGTGATTTTAACCTACCACCTGTGGTAGCAAAAGAAATAGTAG +CTAGCTGTGATAAATGTCAACTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTC +CAGGAATATGGCAATTAGATTGTACACATCTAGAAGGAAAAGTTATCCTGGTAGCAGTTC +ATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAAGAAACAG +CATACTATCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAGTACATACAGACAATG +GCAGTAATTTTACCAGTGCTGCTGTTAAGGCCGCCTGTTGGTGGGCAGGTATCAAGCAGG +AATTCGGAATTCCCTACAATCCCCAAAGCCAAGGAGTAGTAGAATCTATGAATAAAGAAT +TAAAGAAAATTATAGGACAGGTAAGAGATCAAGCTGAACATCTTAAAACAGCAGTACAAA +TGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGG +AAAGAATAATAGACATAATAGCAACAGACATACAAACTAGAGAACTACAAAAACACATCA +CAAACATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCAATTTGGAAAGGAC +CAGCAAAGCTTCTTTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAA +AGGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTG +ATGATTGTGTGGCAAGTAGACAGGATGAGGATTAACACATGGAAAAGTTTAGTAAAATAC +CATATGCATGTTTCAAAGAAAGCTAAAGGATGGTTTTATAGACAGCACTATGAGAGCCCT +CACCCAAAAATAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAAACTGGTGGTAACA +ACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATCTGGGTCAGGGAGTCTCCATA +GAATGGAGAAAAAAGAGATATAGCACACAAGTAGACCCTGGTTTGGCAGACCAACTAATT +CATATGTATTACTTTGATTGTTTTGCAGACTCTGCTATAAGAAAAGCCATATTAGGACAT +AGAGTTAGTCCTAGGTGTGATTATCAAGCAGGACATAACAAGGTAGGATCCTTACAATAT +TTGGCACTAACAGCACTAATAGAGCCAAAAAAGATAAAACCACCTTTGCCTAGTGTTAGG +AAGTTAACAGAAGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAACCAT +ACAATGAATGGACATTAGAGATTTTAGAGGAGCTCAAGAGTGAAGCCGTTAGACATTTCC +CTAGGGTATGGCTTCATGGCTTAGGACAACATATTTATGAAACTTATGGGGATACCTGGG +CAGGAGTTGAAGCTATAACAAGAGTCCTGCAACAACTACTGTTCATTCATTTCAGAATTG +GGTGCCAACATAGCAGAATAGGCATTACTCGACAGAGAAGAGCAAGAAATGGATCCAGTA +GATCCTAACCTAGAGCCCTGGAAACATCCAGGAAGTCAGCCAAGTACTGCTTGTAACTCA +TGTTATTGTAAACAGTGTTGCTATCATTGCCAACTTTGCTTCATAAAGAAAGGCTTAGGC +ATCTCCTATGGCAGGAAGAAGAGAGGACAGCGACGAGGACCTCCTCAAGGTAGTCAGACT +CATCAAGTTCCTGTACCAAAACAGTAAGTAGTACATGTAATGCAATCTTTAGAGATATTA +GCAATAGTAGCATTAGTAGTAGCGCTAATATTAGCAATAGTTGTGTGGACCATAGCATAC +ATAGAATATAGGAAAGTAAAGAGGCAAAGAAAAATAAATCAGTTAATTGATAGAATAATA +GAAAGAGAAGAAGACAGTGGCAATGAGAGTGAGGGGGATAGAGAGGAATTATCAACACTT +ATGGAAATGGGGCACCATGCTCCTTGGGATGTTGCTGATAACATATAGTGCAGCAAGTAA +TTTGTGGGTCACAGTATATTATGGGGTGCCTGTATGGAAAGAAGCAAACGCCACTCTATT +TTGTGCATCAGATGCTAAAGCATATAAAGCAGAGGCACATAATATCTGGGCTACACATGC +CTGTGTACCCACGGACCCCAATCCACAAGAAATAGAACTGAAAAATGTCACAGAAAATTT +TAATATGTGGAAAAATAACATGGTGGAACAAATGCATGAGGATATAATCAGTTTATGGGA +ACAAAGCCTAAAACCATGTGTAAAATTAACCCCACTATGTGTCACTTTAAACTGCACTGA +TGCTAAAGTGAGCAGCACTGAGACTGAATTGAACAACAGCAGCACTGGAGAGATGAAAAA +TTGCTCTTTTAATATAACCACAGAATTAAGGGATAAGAAAAAGCAAGAATATGCACTTTT +TTATAAACTTGATATAGTAGAAATAGATAAGAAGGATAATAGTACTGATAATAGTACTGA +TGGAACTTATAGGTTAATAAATTGTAATACCTCAGCCATTACACAAGCTTGTCCAAAGGT +ATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGATTTGCAATTCTCAAATG +CAATGACAAGAGGTTCAATGGAACAGGCCCATGCACAAATGTCAGCACAGTACAATGTAC +ACATGGAATCAAGCCAGTAGTGTCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGA +AGACATTATGATTAGATCTGAAAATTTCACAGACAATGTTAAAAACATAATAGTGCAGTT +TAACACAACTATAAACATTACCTGTATAAGGCCTGGTAACAATACAAGAAAAAGTATACA +TTTCGGACCAGGGCAGGCACTCTATGCAAATGATATAATAGGAGACATAAGAAAAGCTCA +TTGTAATATTAGTGGAAAAGATTGGAATAACACTCTACAAGAGGTAGCTAGAAAATTAGG +AAATCTCTATAACAAAACAATAAGTTTTAGACCATCCTCAGGAGGGGACCCAGAAATTAC +AACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACATCAAAACTGTTTAA +TAGAACATGGAGTATTGGTACATGGGAGGATAGTACAGGGAATGATAATAATACTGCATT +AAATGATACAATAACCCTCCCATGTAGAATAAAACAAATTATAAACATGTGGCAGGAAGT +AGGAAAAGCAATGTATGCCCCTCCCATCGCAGGACAAATTAAATGTACATCAAATATTAC +AGGGCTATTATTGACAAGAGATGGTGGTAATAATAATTCTGGTAATAATTCTGGAAATTC +TACAGAGATCTTCAGGCCTGGAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATA +TAAATATAAAATAGTAAGAATTGAACCACTAGGAGTAGCACCCACCAGGGCAAAGAGAAG +AGTGGTGGAAAGAGAAAAAAGAGCAATAGGATTAGGAGCTATGTTCCTTGGGTTCTTGGG +AGCAGCAGGAAGCACGATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGACTATT +ATTGTCTGGTATAGTGCAACAGCAAAATAATTTGCTGAGAGCTATAGAGGCGCAACAACA +TCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAATCCTGGCTGTGGA +AAGATACCTGAAGGATCAACAGCTCCTAGGAATTTGGGGTTGCTCTGGAAAACACATCTG +CACCACTAATGTGCCCTGGAATTCTAGTTGGAGTAATAAATCTCTAGATGATATTTGGGA +GAACATGACCTGGATGCAATGGGAAAAAGAAATTGAGAATTACACAGGTGTGATATACAA +TTTAATTGAAGAGTCGCAAATCCAGCAAGAAAAAAATGAAAAAGAATTATTAGAATTGGA +TAAGTGGGCAAGTTTGTGGAATTGGTTTAGCATAACTAACTGGCTGTGGTATATAAGAAT +ATTCATCATGATAGTAGGAGGCTTAATAGGCTTAAGAATAGTTTTTGCTGTGCTGTCTAT +GGTAAATAGAGTTAGGCAGGGGTACTCACCTCTATCATTTCAGACCCTCCTCCCAGCCCC +GAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGCAAGACAGAGGCAC +CTCCATACGATTGGTGAACGGATTCTCAGCACTTATCTGGGACGATCTGCGGAACCTGTG +CCTCTTCAGCTACCACCGCTTGAGAGACTTAATCTTAATTGTAGCGAGGACTGTGGAACT +TCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATCTGTGGAATCTCCTACAGTATTGGGG +TCAGGAACTGAAGAATAGTGCTATTAGCTTGTATAACGCCACAGCAGTAGCAGTAGCTGA +GGGGACAGATAGGGTAATAGAACTAGGGCAAAGAGCTTTTAGAGCTGCTCTTCATATACC +CACAAGAATAAGACAAGGTTTAGAAAGGGCTTTGCTATAAAATGGGTGGCAAATGGTCAA +AAAGTAGTATAGTTGGATGGCCTGCTATAAGGGAAAAAATAAGAAGAACTAATCCTATTC +CAGCAGCAGATGGGGTAGGAGCAGTATCTAAAGATCTGGAAAAACATGGGGCAATCACAA +GTAGCAATACAGCAGATACTAATGCTGCCTGTGCCTGGCTAGAAGCACAAGAAGAGGAAG +AGGTGGGCTTTCCAGTCAGACCTCAAGTACCTTTAAGACCAATGACTTACAAGGGAGCTT +TAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAGTTTACTCCCAAA +GAAGACAAGAGATCCTTGATCTTTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGC +AGAACTACACACCAGGGCCAG +>G.BE.1996.0.DRCBL.AF084936 AF084936 +ACTTGACCTATGGGCTATAATACCAAAGGATTCTTCCCAGATTGGCAGAACTACACACCA +GGGCCAGGGACTAGATTCCCACTGACCCTTGGGTGGTGCTTCAAACTGGTACCAATGGAT +CCATCAGAGGTAGAGGAAGCCAATAAAGGAGAGAACAACAGTCTATTACACCCCATCTGC +CAGCATGGAATGGAGGACGAAGACAGAGAAGTGCTGGTGTGGAAATTTGACAGTAGCCTA +GCACGGAGACACATAGCCCGAGAGCTGCATCCGGAGTACTACAAAGACTGCTGACACAGA +AGTTGCTGACAAGGGGACTTTCCGCCTGGGACTTTCCAGGGGAGGCGCGGCCTGGGAGGG +GCTGGGGAGTGGCTAACCCTCAGAAGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGG +GTCTCTCTTGTTAGACCAGATTTGAGCCTGGGAGCTCTCTGGCTAGCAGGGGAACCCACT +GCTTAGAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGT +GTGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGATAGTGTAAAAATCTCTAGCAG +TGGCGCCCGAACAGGGACTTGAAAACGAAAGTTAATAGGGACTCGAAAGCGAAAGTTCCA +GAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGC +GGCGACTGGTGAGTACGCCAAAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGT +GCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCTTGGGAGAAAATTCGGTTGAGG +CCAGGGGGAAAGAAAAGATATAGAATGAAACATTTAGTATGGGCAAGCAGGGAGCTGGAC +AGATTTGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGTTGTCAAAAAATAATGGCA +CAGTTGCAACCAGCTCTCCAAACAGGAACAGAGGAGATTAAATCACTATTTAATACAGTA +GCAACCCTCTATTGTGTACATCAAAAGATAGAGGTAAGAGACACCAAAGAGGCTCTAGAG +GAAGTGGAAAAGATACAAAAGAAGAGTCAGCAAAAAGAAAACAGCAGCAGCCAAGTCAGT +CAAAATTACCCTATAGTGCAGAATGCACAAGGGCAAATGGTACACCAGGCCATATCACCT +AGAACTTTGAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGTCCAGAAGTAATA +CCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGCTAAAT +ACAGTGGGGGGGCATCAAGCAGCTATGCAAATGTTAAAGGAGACTATCAATGATGAAGCT +GCAGAATGGGACAGGCTACATCCACAGCAGGCAGGGCCTATTGCACCAGGCCAGATAAGG +GACCCAACGGGAAGTGATATAGCAGGAGCTACTAGTACCCTGCAGGAACAGATAAGATGG +ATGACCAGCAACCCACCTGTCCCAGTGGGAGAAATTTATAAAAGATGGATAATCCTGGGG +TTAAATAAAATAGTAAGAATGTACAGCCCTGTCAGCATTTTGGACATAAGACAGGGGCCA +AAAGAACCCTTTAGAGATTATGTGGATAGATTCTTTAAAACCCTGAGAGCTGAGCAAGCT +ACACAGGAAGTAAAAAGCTGGATGACAGACACCTTGTTGATCCAAAATGCAAACCCAGAT +TGTAAGATCATCTTAAAAGGATTAGGACAAGGAGCTACACTAGAAGAAATGATGACAGCA +TGTCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTAGCTGAGGCAATGAGCCAG +GCATCAGGTGCAGCAGCAGCCATAATGATGCAGAAAAGCAATTTCAAGGGCCCAAGAAGA +ACAATTAAATGTTTCAACTGTGGCAAGGAAGGACATCTAGCCAGAAATTGCAGGGCCCCT +AGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAGGGACATCAAATGAAAGAATGCACAGAA +AGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGGAGGCCAGGGAATTTC +CTTCAGAACAGGCCAGAGCCAACAGCCCCACCCGCAGAGAACTTCGGGTTCGGGGAGGAG +ATAGCCCCCTCCCCGAAGCAGGAGCAGAAGGAAAAGGAACTATATCCTCTATCTTCCCTC +AAATCACTCTTTGGCAACGACCAATAGTCAAAGTAAGAATAGGGGGACAGCTAATAGAAG +CCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAGATTTACCAGGAAAAT +GGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAA +TACTTATAGAAATTAGTGGAAAAAGGGCTATAGGGACAGTATTAGTAGGACCTACACCTA +TCAATATAATTGGGAGAAATATGTTGACTCAGATTGGTTGCACTTTAAATTTTCCAATTA +GTCCTATTGAAACTGTGCCAGTAAAATTAAAGCCAGGAATGGATGGGCCACGGGTTAAAC +AATGGCCATTGACAGAAGAGAAAATAAAAGCATTAACAGAAATTTGTAATGAGATGGAAA +AGGAAGGAAAAATTTCAAAGATTGGGCCTGAAAACCCATATAACACTCCAATATTTGCCA +TAAAGAAAAAAGACAGTACTAGATGGAGAAAATTGGTAGATTTCAGAGAGCTCAATAAAA +GGACTCAAGACTTCTGGGAGGTCCCATTAGGAATACCTCATCCCGGGGGGTTAAAACAGA +AAAGATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGATGAAA +ACTTTAGAAAATATACTGCATTCACTATACCTAGTACAAATAATGAGACACCAGGAATTA +GATATCAGTACATCCACAGGGATGGAAAGGATCACCAGCAATATTTCAGAGTAGCATGAC +AAAAATCTTAGAGCCCTTTAGAACACAAAATCCAGAAATAGTGATCTACCAATACATGGA +TGATTTATATGTAGGATCAGACTTAGAAATAGGGCAGCATAGAGCAAAAATAGAAGAGTT +AAGAGAACATCTACTGAGATGGGGATTTACCACACCAGATAAGAAACATCAGAAAGAACC +TCCATTTCTTTGGATGGGATATGAGCTCCATCCTGACAAATGGACAGTACAACCTATACA +GCTGCCAAACAAGGAAAACTGGACTGTTAATGATATACAAAAGTTAGTGGGAAAACTAAA +TTGGGCAAGTCAGATTTATCCAGGAATTAAAGTAAAGCAATTATGCAAACTCATTAGGGG +GGCCAAAGCATTAACAGACATAGTATCAATGACAGCAGAAGCAGAAATGGAGTTGGCAGA +GAACAGGGAGATTCTAAAAGAACCTGTACATGGAGTCTATTATGACCCATCAAAAGACCT +AATAGCAGAAGTACAGAAACAAGGGCTAGGCCAATGGACATATCAAGTTTATCAAGAGCC +ATATAAAAATCTGAAAACAGGAAAATATGCAAAAGGGGGGTCTGCCCACACTAATGATGT +AAAGCAATTAACAGAAGTAGTGCAAAAAATAGCCACAGAGGGCATAATAATATGGGGAAA +GATTCCTAAATTTAAATTACCTATAAAAAAAGAAACATGGGAAGTGTGGTGGACAGAGTA +TTGGCAGGCCACTTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGTCAAATT +ATGGTATCAGTTAGAAACAGAACCCATACCAGGAGTAGAAACTTACTATGTAGATGGGGC +AGCTAATAGGGAGACAAAATTAGGAAAGGCAGGATATGTGACTGACAAAGGAAGACAAAT +TATTATTACCCTAACTGAAACAACAAACCAAAAGGCTGAATTACATGCAATTCAGCTAGC +TCTGCAGGACTCACAATCAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAGGAAT +CATTCAAGCACAGCCAGATAGGAGTGAATCAGAAATAGTCAATCAAATAATAGAACAGCT +AATAAAAAAGGAAAAGGTCTACCTGTCATGGGTACCAGCACACAAAGGGATTGGAGGAAA +TGAACAAGTGGATAAATTAGTCAGTAGTGGAATCAGGAAAGTACTATTTTTAGATGGCAT +AGATAAAGCCCAAGAAGAGCATGAAAGATATCACAGCAATTGGAAAGCAATGGCTAGTGA +TTTTAATCTGCCACCTATAGTAGCAAAAGAAATAGTGGCCAGCTGTGATAAATGCCAGTT +AAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTGGATTG +TACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTGGCTATATAGA +AGCAGAAGTTATCCCAGCAGAAACAGGACAGGAAACAGCATACTTTATATTAAAATTAGC +AGGAAGGTGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTTACCAGTGCTGC +AGTAAAGGCAGCATGTTGGTGGGCAAGCATCACACAGGAATTTGGAATTCCCTACAATCC +CCAAAGCCAAGGAGTAGTGGAATCTATGAATAAGGAATTAAAGAAAATCATAGGACAGGT +CAGGGATCAAGCTGAACATCTTAAGACAGCAGTACAGATGGCAGTATTCATTCACAATTT +TAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGC +ATCAGATATACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGT +TTATTACAGGGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGG +TGAAGGGGCAGTAGTAATACAAGACAATAACGAAATAAAAGTAGTACCAAGAAGAAAAGC +AAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACA +GGATGAGGATTAGAACATGGAACAGTCTAGTGAAACATCATATGTATATTTCAAAGAAAG +CTAAAGGCTGGTTTTATAGACATCACTATGAAAGTAGGCACCCAAAAGTAAGTTCAGAAG +TACACATCCCACTAGGAGATGCTAAACTAGTAGTAAGAACATATTGGGGTCTGCATACAG +GAGACAAAGAATGGCACTTGGGGCATGGGGTCTCCATAGAATGGAGGCAGGGAAGATATA +GTACACAAGTAGATCCTGACCTAGCAGACCACCTAATTCATCTGCATTATTTTAATTGTT +TTTCAGAATCTGCCATAAGGAAAGCCATATTAGGACAAACAGTTAGGCCTAGTTGTGAAT +ATCCAGCAGGGCATAATAAGGTAGGATCTTTACAATATTTGGCATTAAAAGTATTAGTGG +CACCAACAAGGAGAAGGCCACCTTTGCCTAGTGTTAGGAAATTAACAGAGGATAGATGGA +ACGAGCCCCAGAAGACCAGGGGCCACAGAGAGAACCCCACAATGAATGGGCATTAGAACT +GTTAGAAGAGCTTAAACATGAAGCTGTTAGACATTTTCCTAGGCCCTGGCTCCATGGTTT +AGGACAGCTTATCTATAACACTTATGGGGATACTTGGGAGGGAGTTGAAGCCATAATAAG +AATACTACAACAACTACTGTTTATCCATTTCAGAATTGGGTGCCAACATAGCAGAATAGG +CATTATTCCACAGAGGAGAAGAGTAAGGGATGGATCCGGTAGATCCTAAACTAGAGCCCT +GGAAGCATCCGGGGAGTCAGCCTAAAACTCCCTGTAACAATTGCTATTGTAAAAGTGTTG +CTGCATTGCAAGTTTGCTTTCTGAACAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGC +GGAAGCACCGACGAGGAACTCCTCACAGCAGTAAGGATCATCAAACTCCTGTACCAAAGC +AGTAAGTAGAAATAAATAGTAGATGTAATGCAACCACTAGAAATATCTGCAATAGTAGGC +TTAATAGTAGCATCCATAGCAGCCATAGTTGTGTGGACTATAGTATTTATAGAATATAGA +AAAATAAGAAAACAGAAAAGAATAGAAAAGTTACTTGATAGGATAAGAGAAAGAGCAGAA +GACAGTGGAAATGAGAGTGAAGGGGATACAGAGGAATTGGCAACACTTATGGAACTGGGG +GATTTTGATCCTTGGGTTGGTGATAATTTGTAGTGCAGAAAAATTGTGGGTCACAGTCTA +TTATGGAGTACCTGTGTGGGAAGATGCAAATGCCCCTCTATTTTGTGCATCTGATGCTAA +AGCACATAGTACTGAAAGTCATAATATCTGGGCCACACATGCTTGTGTACCCACAGATCC +CAGCCCACAAGAAATAAATATGAGAAATGTAACAGAAAATTTTAACATGTGGAAAAATAA +CATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATGAAAGCCTAAAGCCATG +TGTAAAGCTAACCCCTCTCTGTGTTACTTTAAACTGTACTGAGATAAACAATAATAGTAC +TCGGAATATCACTGAGGAGTACAGAATGACAAACTGCTCTTTCAATATGACCACAGAACT +GAGAGATAAGAAGAAGGCAGAATACGCGCTTTTCTATAGAACTGATGTAGTACCAATTAA +TGAGATGAATAATGAAAATAATGGTACAAATAGTACATGGTATAGGCTGACAAATTGTAA +TGTCTCAACCATTAAACAGGCTTGTCCAAAGGTAACTTTTGAGCCAATTCCCATACATTA +TTGTGCTCCAGCTGGTTTTGCGATCCTAAAGTGTGTGGATAAGAAGTTCAATGGAACAGG +AACATGTAACAATGTCAGTACAGTACAATGTACACATGGAATTAAGCCAGTAGTATCAAC +TCAACTACTGCTGAATGGCAGTTTAGCAGAAAAAGATATCATAATTAGTTCTGAAAATAT +CTCAGACAATGCCAAAGTCATAATAGTGCACCTTAATAGGTCTGTAGAAATTAATTGTAC +CAGACCCAACAACAATACAAGAAGAAGTGTAGCAATTGGACCAGGACAAGCATTCTATAC +AACAGGAGAAGTAATAGGAGACATAAGAAAGGCACATTGTAATGTTAGTTGGACAAAATG +GAATGAGACGCTAAGGGATGTCCAGGCAAAACTACAGGAATACTTTATTAATAAGAGCAT +AGAATTTAACTCATCTTCAGGAGGGGACCTAGAAATTACAACACATAGTTTCAATTGTGG +AGGGGAATTTTTCTATTGTAATACATCAGGACTATTTAATAATAGTATATTAAAGAGTAA +TATATCAGAAAATAATGATACTATCACACTTAATTGTAAGATAAAACAAATTGTGAGAAT +GTGGCAGAGAGTGGGACAAGCAATGTATGCCCCTCCCATTGCAGGAAACATTACATGTAG +ATCAAACATTACAGGACTAATATTAACAAGAGATGGTGGGGATAACAATAGCACTAGTGA +GATCTTCAGACCTGGAGGAGGAGATATGAAAAACAATTGGAGAAGTGAATTATATAAGTA +TAAAACAGTAAAAATCAAATCACTAGGAATAGCACCCACCAGGGCAAGGAGAAGAGTGGT +GGAGAGAGAAAAAAGAGCAGTTGGAGTAGGAGCTATCTTCCTTGGGTTCTTAGGAACAGC +AGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGTCAGACAATTATTGTC +TGGCATAGTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCGCAGCAGCATCTGTT +GCAACTCACAGTCTGGGGCATTAAACAGCTCCGGGCAAGAGTCCTGGCTCTGGAAAGATA +CCTAAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCAC +TAATGTGCCCTGGAACACTAGTTGGAGTAATAAATCTTATAATGAGATTTGGGAGAACAT +GACTTGGATAGAATGGGAAAGGGAAATTGACAATTACACATACCACATATACAGCCTGAT +TGAACAATCGCAAATCCAGCAGGAAAAGAATGAACAAGACTTATTGGCATTGGACCAGTG +GGCAAGTCTGTGGAGTTGGTTTAGCATCTCAAACTGGCTATGGTATATAAGAATATTTGT +AATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTGCTGTGCTATCTATAGTAAA +TAGAGTTAGGCAGGGCTACTCACCTTTATCCTTTCAGACCCTTCTCCACCACCAGAGGGA +ACCCGACAGGCCCGCAGGAATCGAAGAAGGAGGTGGAGAGCAAGACAGAGACAGATCCAT +TCGATTAGTGAGCGGATTCTTAGCACTTGCCTGGGACGACCTGAGGAGCCTGTGCCTCTT +CAGCTACCACCGCTTGAGAGACTTCATCTTGATTGCAGCGAGGACGGTGGAACTTCTGGG +ACGCAACAGTCTCAAGGGACTGAGATTGGGGTGGGAAGCCCTCAAATATTTGTGGAATCT +TCTGTTGTATTGGGCTCGGGAACTAAAGAATAGTGCTATTAATTTGCTTGATACAATAGC +AATAGCAGTAGCTAACTGGACAGATAGGGTTATAGAAGTAGCACAAAGAGCTGGTAGAGC +TGTTCTCAACATACCTAGAAGAATAAGACAGGGCTTAGAAAGAGCTTTGCTATAAAATGG +GAAACAAGTGGTCAAAAAGGAAAGTAGCTGGATGGCCCGAGGTAAGGGAAAGACTAAGAC +AACACCCTGCAGCAGCAGAAGGAGTAGGAGCAGTATCTCAAGATTTAGATAGGCATGGAG +CCATCACAAGTAGAAATACAGCAGGCACCAATCCTGATTGTGCCTGGCTGGAAGCACAAG +AGGAGGACTCAGAGGTAGGCTTTCCAGTCAGACCACAGGTACCTTTAAGACCTATGACTT +ATAAGGCTGCGTTTGATCTCAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAG +TTTACTCCAAGAAAAGACAAGAGATCCTTGACCTATGGGTCTATCATACACAAGGATTCT +TCCCAGATTGGCAGAACTACACACCAGGGCCAGGGACTAGAGTCCCACTGACCTTTGGGT +GGTGCTTCAAACTGGTACCAATGGAGCCATCAGAGGTAGAGGAAGCCAATAAGGGAGAGA +ACAACAGCCTGTTACACCCCATCTGCCAGCATGGAATGGAGGACGAAGATGGAGAAGTGC +TGGTATGGAGATTTGACAGTAGCCTGGCACGGAGACACTTAGCCCGAGAGCTGCATCCGG +AGTACTACAAAGACTGCTGACACAGAAGTTGCTGACAAGGGGACTTTAAGTTGCTGACAA +AGGACTTTCCGCCCGGGACTTTCCAGGGGAGGCGCGGCCTGGGAGGGGCTGGGGAGTGGC +TAACCCTCAGAAGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGGGTCTCTCTTGTTA +GACCAGATTTGAGCCTGGGAGCTCTCTGGCTAGCAGGGGAACCACTGCTTAGAGCCTCAA +TAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAAC +TAGAGATCCCTCAGACCACTCTAGATAGTGTAAAAATCTCTAGCA +>CRF01_AE.CN.2007.0.07CNYN315.KF835502 KF835502 +GTGGCGCCCGAACAGGGACTTGAAAGTGAAAGTTAATAGGGACTCGAAAGCGGAAGTTCC +AGAGAAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAG +CGGCGACTGGTGAGTACGCCAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTG +CGAGAGCGTCGGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTACGGC +CAGGGGGAAGAAAAAAGTATCGGATGAAACATTTAGTATGGGCAAGCAGAGAGTTAGAAA +GATTTGCACTCAACCCTGGCCTTTTAGAAACAGCAGAAGGGTGCCAACAAATAATAGAAC +AAGTACAGCCAGTTCTCAAGACAGGATCAGAAGAACTTAGATCATTATTTAATTTAGTAG +TAACCCTCTGGTGCGTGCACCAAAGGATAGAGATAAAAGACACCAAGGAAGCTCTAGATA +AATTAGAGGAAGTACAAAATAAGAACAAGCAAAAGACACAGCAGGCAGCAGCTGACACAG +GAAGCAGCAGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATGG +TACATCAGCCTGTATCACCTAGAACTCTGAATGCATGGGTAAAGGTAGTAGAAGAAAAGG +GTTTTAACCCAGAAGTAATACCCATGTTCTCAGCATTATCAGAGGGAGCCACCCCACAAG +ATTTAAATATGATGCTAAATATAGTGGGGGGACACCAGGCAGCAATGCAAATGTTAAAAG +AAACCATCAATGAGGAAGCTGCAGAATGGGATAGGGTACACCCAGTACATGCAGGGCCTA +TTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCC +TTCAAGAACAAATAGGATGGATGACAAGCAATCCACCTATCCCAGTGGGAGATATCTATA +AAAGGTGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTTAGCATTT +TGGATATAAGACAAGGACCAAAAGAACCCTTCAGAGATTATGTAGATAGGTTCTATAAAA +CTCTCAGAGCAGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACCCTACTAG +TCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGAGCCACAT +TAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTAGCCATAAAGCAAGGGTTT +TGGCTGAGGCAATGAGCCACGTACAAAATACAAATATAATGATGCAGAGAGGCAATTTTA +AGGGCCCAAAAAGAATTAAGTGCTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATT +GCAGGGCCCCTAGAAAAAAGGGCTGCTGGAAATGTGGGAAGGAAGGACATCAAATGAAAG +ACTGTACTACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGAA +GGCCGGGAAATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAACTGGG +GGATGGGGGAGGAGCAGAAAGACTCTCCTCCTTCAATTTCCCTCAAATCACTCTTTGGCA +ACGACCCCTTGTCACAGTAAAAATAGGGGGACAGCTAAAAGAAGCTCTATTAGATACAGG +AGCAGATGATACAGTATTTGAAGAAATAAATTTGCCAGGGAAATGGAAACCAAAAATGAT +AGGGGGAATTGGAGGTTTTATCAAAGTAAGGCAATATGATCAGATACCTATAGAAATTTG +TGGAAAAAGAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGACG +AAACATGTTGACTCAGGTTGGTTGTACTCTAAATCTCCCAATTAGTCCTATTGACACTAT +ACCAGTAACATTAAAGCCAGGAATGGATGGACCAAAGGTTAAACAATGGCCATTGACAGA +AGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAGATGGAAGAAGAAGGAAAGATCTC +AAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAGGACAG +CACCAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAGGATTTTTG +GGAAGTTCAATTAGGGATACCGCATCCAGCAGGATTAAAAAAGAAAAAATCAGTAACAGT +ACTAGATGTGGGAGATGCATATTTTTCAGTTCCTTTAGATGAAAGCTTTAGAAAGTATAC +TGCATTCACCATACCTAGTATAAACAATGAGACACCAGGAATCAGATATCAGTACAATGT +GCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAGAGTAGCATGACAAAAATCTT +AGAGCCCTTTAGAATAAAAAATCCAGAAATGATTATCTATCAATACATGGATGATTTGTA +TGTAGGATCTGATTTAGAAATAGGGCAGCACAGGGAAAAAATAGAACAGCTAAGAGCTCA +TCTATTGAGCTGGGGATTTACTACACCAGACAAAAAGCATCAGAAGGAACCTCCATTCCT +TTGGATGGGATATGAGCTCCATCCTGACAAATGGACAGTCCAGCCTATAGAACTGCCAGA +AAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAG +TCAAATTTATGCAGGGATTAAGGTAAAACAACTGTGTAAACTCCTCAGGGGAACTAAAGC +ACTAACAGAAGTAGTACCACTGACTGAAGAAGCAGAATTAGAGTTGGCAGAGAACAGGGA +GATTCTAAAAACCCCTGTGCATGGAGTATATTATGACCCATCAAAAGACTTAGTAGCAGA +AGTACAGAAACAAGGGCAGGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAA +TCTAAAAACAGGAAAATATGCCAGAAAAAGGTCTGCTCACACTAATGATGTAAGACAATT +AACAGAAGTGGTGCAAAAAATAGCCATGGAATGCATAGTAATATGGGGAAAGACCCCTAA +ATTTAGACTACCCATACAAAGAGAAACATGGGAAACATGGTGGATGGAATATTGGCAGGC +TACCTGGATTCCTGAATGGGAGTTTGTTAATACCCCTCCTCTAGTAAAATTATGGTACCA +ATTAGAAAAAGACCCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAGTAG +GGAGACTAAGCTAGGAAAAGCAGGGTATGTCACTGACAGAGGAAGACAAAAGATAGTTTC +CCTAACTGAGACAACAAATCAAAAGACTGAATTGCGTGCTATCCAGTTAGCCTTGCAGGA +TTCAGGATCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGC +ACAACCAGACAGGAGTGAATCAGAAGTAGTCAACCAAATAATAGAAGAGCTAATAAAAAA +GGACAAGGTCTACCTGTCATGGGTGCCAGCACACAAGGGGATTGGAGGAAATGAACAAGT +AGATAAATTAGTCAGTTCAGGGATCAGGAAAGTGCTATTTTTAGATGGAATAGATAAGGC +TCAAGAAGAACATGAAAGATATCACAGCAATTGGAGGACAATGGCTAGTGATTTTAATTT +GCCACCTATAGTGGCAAAGGAAATAGTAGCCAGCTGTGATAAATGTCAACTAAAAGGGGA +AGCTATGCATGGACAAGTGGACTGTAGTCCAGGGATATGGCAATTAGATTGCACACATCT +AGAGGGAAAAGTCATCCTGGTAGCAGTCCACGTGGCCAGTGGATATATAGAAGCAGAGGT +TATCCCAGCAGAAACAGGACAAGAGACAGCATACTTTCTGCTAAAATTAGCAGGAAGATG +GCCAGTGAAAGTAATACACACAGACAACGGTAGCAATTTCACCAGCGCTGCACTTAAAGC +AGCCTGTTGGTGGGCCAATGTCCGACAGGAATTTGGGATTCCCTACAATCCCCAAAGTCA +AGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTGAGAGATCA +AGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAA +AGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACAT +ACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAG +GGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGC +AGTAGTAATACAAGACAATAGTGATATAAAAGTAGTACCAAGAAGGAAAGCAAAGATCAT +TAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGA +TCAGAACATGGAATAGTTTAGTAAAACATCATATGCATGTCTCAAAGAAAGCTAACCAGT +GGTTTTATAGACATCATTATGAAAGCCAGCATCCAAAGGTAAGTTCAGAAGTACATATCC +CAATAGGAGAAGCTAGATTAGTAATAAGAACATATTGGGGCTTGCAGACAGGAGAAAAGG +AATGGCACTTGGGTCATGGAGTCTCCATAGAATGGAGGCAGAGAAGTTATAGCACACAAA +TAGATCCTGACCTAGCAGACCAACTGATTCATCTACAATATTTTGACTGTTTTTCAGAAT +CTGCCATAAGGAAAGCCATATTAGGACAAGTAGTTAGTCGTAGGTGTGACTATCCATCAG +GACATAACAAGGTAGGATCCTTACAATATTTGGCATTGAAAGCATTAACAACACCAAAAA +GGATAAGACCACCTCTGCCTAGTGTTAAGAAATTAACAGAAGATAGATGGAACAAGCCCC +AGAAGATCAGGGGCCACAGAGACAACCCTACAATGAATGGACATTAGAACTGTTAGAGGA +GCTTAAAAATGAAGCTGTTAGACATTTTCCTAGGCCCTGGCTCCATGGCTTAGGAGAATA +CATCTATAACACTTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGAACTTTGCA +TCAACTACTGTTTGTTCATTACAGAATTGGGTGTCAGCATAGCAGAATAGGCATTATACC +AAGGAGAAGAGGCAGGAATGGAGCCGGTAGATCCTAAACTAGAGCCCTGGAATCATCCAG +GAAGTCAGCCTACAACTGCTTGTAACAAGTGTTACTGCAAAAAATGTTGCTGGCATTGCC +AAATATGCTTTCTGAAAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAAGCACC +GACGAGGAACTCCTCGCAGCAGTAAGAACCATCAGGATCCTCTACCAGAGCAGTGAGTAA +TAAGTAAATGTAATGACGCCTTTAGAAATTAGTGCAATAGTAGGACTAGTAGTAGCTCTA +ATCTTAGCAATAGTAGTGTGGACTATAGTAGCTATAGAATATAAGAAAATACTAAGGCAA +AGAAAAATAGACAGATTAATTAAAAGAATAAGAGAAAGAGAAGAAGACAGTGGAAATGAG +AGTGAGGGAGACACAGATGAATTGGCTAAACTTGTGGAAATGGGGGACTTTGATCCTTGG +GTTGGTGATAATTTGTAGTGCCTCAAACAACTTGTGGGTTACAGTTTATTATGGGGTTCC +TGTGTGGAGAGATGCAGATACCACCTTATTCTGTGCATCAGACGCCAAAGCACATGAGAC +AGAAGTGCACAATATCTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGA +AATAATCCTAGAAAATGTAACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAGCA +GATGCAGGAGGATGTAATCAGTTTATGGGATGAAAGTCTAAAACCATGTGTAAAGTTAAC +TCCTCTCTGCGTTACTCTAAAATGTACCAATGCTAATTTGAACAATGCTAATTTGACCAA +TACAACCAGTGATAGTTTGCTCAATATGACAGGCGAGGTAAAAAACTGTACTTTTAATAT +GACCACAGAAATAAGAGATAAGAAGCAGAAAGTCTACGCACTTTTTTATAGGCCTGATCT +AGTACAAATTAACAATAGCAATCCTAGAGAGTATATGTTAATAAATTGTAATACTTCAGT +CATTAAGCAGGCTTGTCCAAAGATATCCTTTGATCCAATTCCTATACATTATTGTGCTCC +AGCTGGTTATGCGATTTTAAAGTGTAATGATAAGAAATTCAATGGGACAGGGCCATGTAA +AAATGTCAGCTCAGTACAATGCACACATGGAATTAAGCCAGTGGTATCAACTCAATTGCT +GTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAA +TGCCAAAACCATAATAGTGCAACTTAATACATCTGTAGAAATCAATTGTACCAGGCCCTC +CAACAATACAATTACAAGTACACGTATAGGACCAGGACAAATGTTCTATAGAACAGGAGA +CATAAAAGGAGACATAAGGAAAGCATATTGTGAGATTAATGGAACAAAATGGAATAAAAC +GTTAGAACAAGTAAGGAAAAAATTAAATAAGCACTTTAACAAGACCATAATATTTCAACC +ACCCTCAGGAGGAGATAGAGAAATTACAACGCATCATTTTAATTGTAGAGGGGAATTTTT +CTATTGCGATACAACAAGATTGTTTAATGATACTGACATAAAAAATAGTAGCAATATCAC +AATTCCATGCAGGATAAAACAAATTATAAACATGTGGCAGAGAGTAGGACAAGCAATGTA +TGCTCCTCCCATCAGTGGAAGTATTAATTGTGTATCAAAAATTACAGGAATACTGTTGAC +AAGAGATGGTGATAATAATGATACTGAAACCTTCAGACCTATAGGAGGGAATATAAAGGA +TAATTGGAAAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCACTAGGAATAGC +ACCCACCAGGGCACAGAGAAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGC +TATGATCTTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCT +GACGGTACACGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAG +GGCTATTGAGGCGCAGCAGCATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCA +GGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAAGATCAACAGTTCCTAGGACTTTGGGG +CTGCTCTGGAAAAATCATCTGCACCACTAATGTGCCCTGGAACTCCACTTGGAGTAATAA +ATCTTATGAAGAAATTTGGAACAACATGACATGGGTAGAATGGGAGAGAGAAATTAGCAA +TTACACAACCCAGATATATGAAATACTTGTGGAATCGCAGAACCAGCAGGACAAGAATGA +AAAGGATTTATTAGAATTGGATAAATGGGCAAATCTGTGGAATTGGTTTGGCATAACAAA +TTGGCTGTGGTATATAAGAATATTTATAATAATAGTAGGAGGTTTAATAGGCTTAAGAAT +ATTTTTTGCTGTGCTTTCTATAGTAAATAGAGTTAGGCAGGGATACTCACCTTTGTCTTT +CCAGACCCTTACCCATCAGCAGAGGGAACCAGACAGACCCGAAAGAATCGAAGAAGGAGG +TGGCGAGCAAGGCAGAGACAGATCCGTGCGATTAGTGAGCGGATTCTTAGCTCTTGCTTG +GGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTCATCTTGAT +TGTAACGAGGACTGTGGAACTTCTGGGACGCAGCAGTCTCCAGGGACTGAGACGGGGGTG +GGAAGTCCTCAAATATCTGGGGAATCTTCTGTCATATTGGGGACAGGAACTAAAGATTAG +TGCTATTTCTTTGCTTAACGCTACAGCAATAACAGTAGGGGGGTGGACAGACTGGGTTAT +AGAAGTAGCACAAAGAGCTGGGAGAGCCATTATCCACATACCTAGAAGAATCAGACAAGG +CTTTGAAAGGGTTTTGCTATAACATGGGAGGCAAGTGGTCAAAAAGTAGCAAAAGGGGAT +GGCCTCAGGTCAGGGAAAGAATAAGGCAAACTCCTCCAGCAGCAGCAGAAGGAGTAGGAG +CAGTATCTCAAGATCTAGATAAACATGGAGCAGTAACAAGTAGTAATATGAATAATCCTG +ATTCTGTCTGGCTGAAAGCACAAGAGGAAGACGAAGAGGGGGTAGGCTTTCCAGTCAGGC +CACAGGTACCTCTAAGACCAATGACTTATAAGGGAGCTTTGGATCTTAGCTTCTTTTTAA +AAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAGAAAAGACAAGAGATCCTTGATT +TATGGGTCTATCATACACAAGGCTACTTCCCTGATTGGCACAACTACACACCAGGGCCAG +GGATTAGATTCCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGACCCAAAAG +ACATAGAGGAGGACAACAAAAGAGAAGACAGCTGCCTGCTACATCCCATAAGCCAGCATG +GAATAGAGGACGAAGACAGAGAAGTGCTGATGTGGAAGTTTGACAGTTCCCTAGCACGAA +GACACATAGCCCGAGAACTGCGTCCAGAGTTCTATAAAGACTGCTGACAAAGGAGTTTCT +AACTAGGACTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCGGGGCGGAATTGGGGAGT +GGTTAACCCTCAGAAGCTGCATAAAAGCAGCCGCTTCTCGCTTGTACTGGGTCTCTCTTG +TTAGACCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAGGGGAACCCACTG +>CRF01_AE.VN.2013.0.VN_474.MT635169 MT635169 +TCAATATTAACTGGGGGAAAATTAGATGCATGGGAAAAGATTAGGCATCTCCTATGGCAG +GAAGATGGCCAATAGATGCAAGTAGTGTGTGCCCGTCTGTGTTAGGACTCTGGTAACTAG +AGATCCCTCAGACCACTCTAGACGCCCGAACAGGGACTTGAAAGTGAAAGTTAATAGGGA +CTCGAAAGCGGAAGTTCCAGAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCA +CACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAATTTTTGACTAGCGGAGGCTA +GAAGGAGAGAGATGGGTGCGAGAGCGTCAATATTAACTGGGGGAAAATTAGATGCATGGG +AAAAAATTAGGTTACGGCCAGGGGGAAAGAAAAAATATCAACTAAAACATTTAGTATGGG +CAAGCAGAGAGTTGGAAAGATTCGCAATTAACCCTGGCCTTTTAGAAACAGCAGAAGGAT +GTCAACAAATATTAGAACAGTTACAGTCAACTCTCAAGACAGGGTCAGAAGAACTTAAAT +CATTATTTAACACAGTAGCAACCCTCTGGTGCGTGCACCAAAGGATAGAGATAAAAGACA +CAAAGGAAGCTTTGGATAAAATAGAGGAAGTACAAAACAAGAGCCAGCAAAAGACACAGC +AGGCAGCAGCTGGCCCAGGAAGCAGTAGCCAAGTTAGCCAAAATTATCCTATAGTGCAAA +ATGCACAAGGACAAATGGTACATCAGCCTGTATCACCTAGAACATTAAATGCATGGGTGA +AGGTAGTAGAAGAAAAGGGCTTTAATCCAGAAGTAATACCCATGTTCTCAGCATTATCAG +AGGGAGCCACCCCACAAGATTTAAATATGATGCTAAATATAGTGGGGGGACACCAGGCAG +CAATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGGGTACACC +CAGTACATGCAGGGCCTATTCCACCAGGCCAGATGAGGGAGCCAAGGGGAAGTGACATAG +CAGGAACTACCAGTACCCTTCAAGAACAAATAGGATGGATGACAAGTAATCCACCTATCC +CAGTGGGAGACATCTATAAAAGGTGGATAATCCTGGGATTGAATAAAATAGTAAGAATGT +ATAGCCCTGTTAGCATTCTGGACATAAGACAAGGGCCAAAAGAGCCCTTCAGGGACTATG +TAGATAGGTTCTATAAAACTCTCAGAGCGGAACAAGCTACACAGGAGGTAAAAAATTGGA +TGACAGAAACCTTGCTAGTCCAAAATGCAAATCCAGACTGTAAGTCCATTTTAAAAGCAT +TAGGAACAGGAGCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTA +GCCATAAAGCAAGAGTTTTGGCTGAGGCAATGAGCAACTTACAACAGGCAAATGTAATGA +TGCAGAGAGGCAATTTTAAGGGCCAGAAAAGAATTAAGTGCTTCAACTGTGGCAAAGAAG +GACATCTAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGGAAGG +AAGGACATCAGATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGAAAAATTTGGC +CTTCCCACAAGGGAAGGCCGGGAAATTTTCCCCAGAGCCGAACAGAGCCAACAGCCCCAC +CAGCAGAGAACTGGGAGATGGAGAGGGAGACAACCTCCTTACTGAAGCAGGAGCAGAAGG +ACAAGGAATATCCTCCTCCTTCAGTCTCCCTCAAATCACTCTTTGGCAGCGACCCATTGT +CACAGTAAGAATAGGGGGACAGCTGAAAGAAGCTCTATTAGATACAGGAGCAGATGATAC +AGTATTAGAAGAGATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGG +AGGTTTTATCAAAGTAAGGCAATATGATCAGATACTTATAGAAATTTGTGGAAAAAAGGC +TATAGGTACAGTGTTGGTAGGACCTACACCTATCAACATAATTGGACGAAATATGTTGAC +TCAGATTGGTTGTACTCTAAATTTCCCAATTAGTCCTATTGACACTGTACCAGTAACATT +AAAGCCAGGAATGGATGGACCAAAGGTTAAGCAATGGCCATTGACAGAAGAAAAAATAAA +AGCATTAACAGAAATTTGTGAAGAAATGGAAAAGGAAGGAAAAATATCAAAAATTGGACC +TGAAAATCCATACAATACTCCAGTGTTTGCTATAAAGAAAAAGGACAGTACTAAATGGAG +GAAGTTAGTGGATTTCAGAGAGCTCAATAAAAGAACTCAGGACTTTTGGGAAGTCCAATT +AGGAATACCGCATCCAGCAGGTTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGG +AGATGCATATTTTTCAGTTCCTTTAGATGAAAGTTTTAGAAAGTATACTGCATTTACCAT +ACCTAGTACAAACAATGAGACACCAGGAACCAGATATCAGTACAATGTGCTGCCACAAGG +ATGGAAAGGATCACCAGCAATATTTCAGTGTAGTATGACAAAAATATTAGAGCCCTTTAG +AATAAAAAATCCAGAAATAGTTATCTATCAATACATGGATGACTTGTATGTAGGATCTGA +CTTAGAAATAGGGCAGCACAGAGCAAAAATAGAGGAGCTAAGAAGTCATCTATTAAGCTG +GGGATTTACTACACCAGACAAAAAGCATCAGAAGGAACCTCCATTCCTTTGGATGGGATA +TGAACTCCATCCTGACAAATGGACAGTTCAGCCTATAGAACTGCCAGAAAAGGACAGCTG +GACTGTCAATGATATACAGAAATTAGTGGGAAAGCTAAATTGGGCAAGTCAAATTTATCC +AGGGATTAAAGTAAAGCAACTGTGTAAACTCCTCAGGGGAACTAAAGCATTAACAGACAT +AGTACCACTGACTGAAGAAGCAGAATTAGAATTGGCAGAGAATAGGGAGATTCTAAAGGC +CCCTGTGCATGGAGTATATTATGACCCATCAAAAGACTTAGTAGCAGAAGTACAGAAACA +AGGGCAGGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTAAAGACAGG +AAAATATGCCAGAAAAAGGTCTGCTCACACTAATGATGTAAGACAATTAACAGAAGTGGT +GCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACC +CATACAAAAAGAAACATGGGAAACATGGTGGATGGAGTATTGGCAGGCTACCTGGATTCC +TGAATGGGAGTTTGTTAATACCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAAAAAGA +CCCTATAGTAGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTAGTAGGGAAACTAAGCT +AGGAAAAGCAGGGTATGTCACTAACAGAGGAAGACAAAAGGTAGTTTCCCTAACTGAGAC +AACAAATCAAAAGACTGAATTACATGCGATCCATTTAGCCTTGCAGGATTCAGGATCAGA +AGTAAATATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGACAG +GAGTGAATCAGAAATAGTCAACCAAATAATAGAAGAGCTAATAAAAAAGGAAAAAGTCTA +TCTGTCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGT +CAGTGCAGGAATCAGGAAGGTGCTATTTTTAGATGGGATAGATAAAGCTCAAGAAGAACA +TGAAAGATATCACAACAATTGGAGAGCAATGGTTAGTGATTTTAATATACCACCTATAGT +AGCAAAGGAAATAGTAGCCAACTGTGATAAATGTCAACTAAAAGGGGAAGCTATGCATGG +ACAAGTGGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATCTAGAAGGAAAAGT +CATCCTGGTAGCAGTCCACGTGGCCAGTGGGTATATAGAAGCAGAAGTTATCCCAGCAGA +AACAGGACAGGAGACAGCATACTTTCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGT +AATACACACAGACAACGGTAGCAATTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTG +GGCCAATGTCCGACAAGAGTTTGGGATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGA +ATCCATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTAAGAGAGCAAGCTGAACACCT +TAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGG +GGGGTACAGTGCAGGGGAGAGAATAATAGACATAATAGCAACAGATATACAAACTAAAGA +ATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGA +CCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACA +AGACAATAGTGATATAAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGG +AAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAAAACATGGA +ACAGTTTAGTAAAACATCATATGTATGTCTCAAAGAAAGCTAAGAAGTGGGTTTATAAAC +ATCACTATGAAAGCCATCATCCAAAGGCAAGTTCAGAAGTACATATCCCACTAGAAGAGG +CTAAATTAGTAATAAAAACATATTGGGGTCTGCAGACAGGAGAAAAAGACTGGCACTTGG +GTCATGGAGTCTCCATAGAATGGAGGCAGAAAGAATATAGAACACAAATAGATCCTGACC +TAGCAGACCGACTGATTCATTTACAATATTTTGACTGTTTTTCAGACTCTGCCATAAGGA +AAGCCATATTAGGACAAGTAGTTAGACGTAGGTGTGACTATCCATCAGGACATAATAAGG +TAGGATCCCTACAATATTTGGCTCTGAAAGCATTAACAACACCAAAAAGGATAAAGCCAC +CTCTGCCTAGTGTTAAGAAATTAACAGAAGATAGATGGAACAAGCCCCAGGAGATCAGGG +GCCACAGAGAGAACCCTACATTGAATGGACATTAGAACTGTTAGAGGAGCTTAAAAATGA +AGCTGTTAGACATTTTCCTAGGACCTGGCTCCATGGCTTAGGACAGTACATCTATAACAC +TTATGGGGATACTTGGGAAGGGGTTCAAGTTATAATAAGAATTTTGCAACAACTACTGTT +TGTTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATACCAGGGAGAAGAGG +CAGGAATGGAGCCAGTAGATCCTAACCTAGAGCCCTGGAAGCATCCGGGAAGTAAACCTG +CAACTAATTGTAACAAGTGTTATTGTAAAAAATGCTGCTGGCATTGTCAACTATGCTTTC +TGAAAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAAGCACCGACGAGGAACTC +CTCAGAGCAGTAAGGATCATCAAAATCCTGTACCAGAGCAGTAAGTAATAAGTATATGTA +ATGTCACCCTTGGAAATTAGTGCCATAGTAGGATTGATAATAGCGCTAATCTTAGCAATA +GTAGTGTGGACTATAGTAGCTATAGAACTTAAGAAAATATTAAGGCAAAGAAAAATAGAT +AAGTTAATTAAGAGAATAAGAGAAAGAGAAGAAGACAGTGGAAATGAGAGTGAAGGGGAC +ACAGATGAGTTGGCCAAACTTGTGGAAATGGGGGACTTTGATCCTTGGATTGGTGATAAT +TTGTAGTGCCTCAGACAACTTGTGGGTTACAGTTTATTATGGGGTTCCTGTGTGGAGAGA +TGCAGAGACCACCCTATTTTGTGCATCAGATGCCAAAGCACATGTGACAGAAGTGCACAA +TGTCTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAAAACTGAA +AAATGTAACAGAAAATTTTAACATGTGGAACAATAACATGGTAGAGCAGATGCATGAGGA +TGTAATCAGTTTATGGGATCAAAGTCTAAAGCCATGTGTAAGGTTAACTCCTCTCTGTGT +TACTTTAAATTGTACTGTTTTGACCAATGGTTCTTTTGAAAATATAACAGAGGAAGTAAA +AAACTGTACTTTTAATATGACCACAGATATAACAGAGGAAGTAAAAAACTGTACTTTTAA +TATGACCACAGACCTAAAAGATAAGAAGCAGAAGGTCTATGCCCTTTTTTATACGCTTGA +TATAGTACCAATTCATCCTAATAGTAATAGTAGCGAGTATAGGTTAACACATTGTAATAC +CTCAGTCATTAAGCAGGCTTGTCCAAAAATAACCTTTGATCCAATTCCTATACATTATTG +TACTCCAGCTGGTTATGTGCTTTTAAAGTGTGATGATAAGAAGTTCAATGGGACAGGGCT +ATGTAAAAATGTCAGCTCAGTACAATGCACACATGGAATTAAGCCAGTGGTATCAACTCA +ACTGCTGTTAAATGGCAGTCTCGCAGAAGAAGAAATAATAATCAGGTCTGAAAATCTCAC +AAACAATGCTAAAACCATAATAGTGCACTTTAATGAATCTGTAGTAATCAATTGTACCAG +ACCCTCCAACAATACAATAACAGGTATACATATAGGACCAGGACAAATGTTCTATAGAAC +AGGAGAGATAAAAGGGGATATAAGAAAAGCATATTGTGAAATTAATGGAACAGAATGGAA +TAAAGTTTTAAAACAGGTAGCTGGAAAACTAGAAGAGCACTTTAATAATAAGAGCATAAG +ATTTCAACCACATTCAGGAGGAGATCTAGAAATTACAACACATCATTTTAATTGTAGAGG +GGAATTTTTCTATTGCAACACAACAGGACTGTTTAATAGAACTTACAAAGACAAGAACTG +TATTGAGGGGTGTGATAACACTACTAACATCATACTCCCATGCAGGATAAAACAAATTGT +AAGAATGTGGCAAGAAGTAGGACAAGCAATGTATGCCCCTCCCATCAGTGGAATAATTAA +TTGTGTATCAAATATTACAGGAGTACTATTGACAAGAGATGGTGGTCAGAATGAGAGTGA +GACTATTGAGACCTTCAGACCTGGAGGAGGAAATATAAAGGACAATTGGAGAAGTGAATT +ATATAAATATAAAGTAGTACAAATTGAACCACTAGGAATAGCACCCACCAGGGCAAAGAG +AAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTATGATCTTTGGGTTCTT +AGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACA +ATTATTGTCTGGTATAGTGCAACAGCAAAGTAATTTGCTGAGAGCTATAGAGGCGCAACA +GCATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTCT +GGAGAGATACCTAAAAGATCAAAAGTTCCTAGGACTTTGGGGCTGCTCTGGAAAAATCAT +CTGCACCACTGCTGTGCCCTGGAACTCCTCTTGGAGTAATAAATCTTATGAAGAGATTTG +GGACCACATGACATGGATACAATGGGAGAGGGAAATTAGCAATTACACAAACCAAATATA +TGATATACTCACAGGATCACAGAACCAGCAGGACAAGAATGAACAGGATCTGTTAGAATT +GGACAAATGGGCAAGTCTGTGGAATTGGTTTGACATAACAAACTGGCTATGGTATATAAA +AATATTTATAATAATAGTAGGAGGTTTAATAGGTTTAAGAATAATTTTTGCTGTGCTTTC +TATAGTAAATAGAGTTAGGCAGGGATACTCACCTTTGTCTTTCCAGACCCCTATCCACCA +GCAGAGGGAACCCGACAGACCCGAAGAAACCGAAGAAGGAGGTGGCGAGCAAGGCAGAGG +CAGATCCGTGCGATTAGTCAGCGGATTCTTAGCACTTGCTTGGGACGATCTACGGAGCCT +GTGCCTCTTCAGTTACCACCTCTTGAGAGACTCCATATCGATTGCAAAGAGGACTGTGGA +ACTTCTGGGACGCAGCAGTCTCAAGGGACTGAGACGGGGCTGGGAGGGCCTCAAATATCT +GGGGAATCTTCTGGTATATTGGGGACAGGAACTGAAAATTAGTGCTATTTCTTTGCTTGA +TACTACAGCAATAGCAGTAGCGGGGTGGACAGATAGGGTTATAGAAGTAGTACAAAGAGT +TTGGAGAGCCTTTCTCCATATACCTAGAAGAATCAGACAGGGCTTAGAAAGGGCTTTGCA +ATAACATGGGAGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGGTCAGGGAAA +GAATAAGGCGAACTCCACCAGCAGCAGAAGGAGTAGGAGCAGTATCTCAAGATTTAGCTA +AACATGGAGCAGTAACAAGTAGTAATATGAATAATGCTGATAGTGTCTGGCTAAGAGCAC +AAGAGGAAGATGATGAGGGGGTAGGCTTTCCAGTCAGGCCACAGGTACCTCTAAGACCAA +TGACTTTTAAGGCAGCTTTTGATCTTAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGATG +GGCTAATTTACTCCAAGAAAAGACAAGAGATCCTTGATTTATGGGTCTATCATACACAAG +GCTTCTTCCCTGACTGGCACAACTACACACCAGGACCAGGGACCAGATTCCCACTGTGTT +TTGGATGGTGCTTCAAGCTAGTACCACTTGACTCAAGAGAAGTAGAAGAGGACACCAAAG +GAGAAAACACCTGCCTGTTACACCCCATGAGCCAACAGGGGCAAGATGATGAAGACCGAG +AAGTGCTAATGTGGCAGTTTGACAGTGCCCTAGCACGAAGACACATAGCCCGAGAACAAC +ACCCAGAGTTCTATAAAGACTGCTGACAGAGAAGTTTCTAACTAGTGACANAGAAGTTTC +TAACTAGGACTTCCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCGGGGCGGAGTTGGGGA +GTGGCTAACCCTCAGATGCTGCATAAAAGCAGCCGCTTTCCGCTTGTACTGGGTCTCTCT +TGTTAGCCCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAGGGGAACCCACTGCTTAAGCC +TCAAGCAGTGGGTTCCC +>CRF01_AE.LA.2011.0.VI50F3912.MG760424 MG760424 +CCCCATGAGCCAGCATGGAATGGAGGGCGAAGAGAGAGAAGTGCTGATATGGAAGTTTGA +CAGTGCCCTAGCACGACAACACATAGCCCGAGAGAAGCATCCGGAGTTCTATAAAGACTG +CTGACAAAGAAGTTTCTGACTAGGACTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGTCG +GGGCGGAGTTGGGGAGTGGCTAACCCTCAGATGCTGCATAAAAGCAGCCGCTTTCTGCTT +GTACTGGGTCTCTCTTGTTAGACCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAGGGGAA +CCCACTGCTTAAAGCCTCAATAAAGCTTGCCTTGAGTGCTTAAAGTGGTGTGTGCCCATT +TGTGTCAGGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGACTGAGTAAAAATCTC +TAGCAGTGGCGCCCGAACAGGGACTTGAAAGTGAAAGTTAATAGGGACTCGAAAGCGGAA +GTTCCAGAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGC +GAGAGCGGCGACTGGTGAGTACGCCAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGAT +GGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTAGGTT +ACGGCCAGGAGGAAAGAAAAAATATAAAATAAAACATTTAGTATGGGCAAGCAGAGAATT +AGAGAGGTTTGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATAAT +AGAACAGTTACAGGCAAATCTCAAGACAGGATCAGAAGAACTTAAATCATTATTTAATAC +AGTAGTAACCCTCTGGTGCGTACACCAAAGGATAGAAGTAAAAGACACCAAGGAAGCTTT +AGATAAAGTAGAGGAAGTACAAAAGAAGAGCCAGCAAAAGACACAGCAGGCAGCAGCTGA +CAAGGGAAACAGCGGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCA +GATGGTACATCAGCCTATATCACCTAGAACTTTGAATGCATGGGTGAAAGTAGTAGAAGA +AAAGGGTTTTAATCCAGAAGTAATACCCATGTTCTCAGCATTATCAGAGGGAGCCACCCC +ACAAGATTTAAATATGATGTTGAATATAGTGGGGGGGCACCAGGCAGCAATGCAAATGTT +AAAAGAAACCATCAATGAGGAAGCTGCAGATTGGGATAGGGCACACCCAGTACATGCAGG +GCCTATTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAG +TACCCTTCAAGAACAAATAGGATGGATGACAAACAATCCACCTATCCCAGTGGGAGACAT +CTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACTAG +CATTTTGGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGATTCTA +TAAAACTCTCAGGGCAGAACAAGCTTCACAGGAAGTAAAAAATTGGATGACAGAAACTTT +GCTAGTCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGAGC +TACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAG +GGTTTTGGCTGAGGCAATGAGCCATGTACAACAGGCAAATGTAATGATGCAGAGAGGCAA +TTTTAAGGGCCAGAGAAAAATTAAGTGCTTCAACTGTGGCAAAGAAGGACACCTAGCCAG +AAATTGCAGGGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGACAGGAAGGACATCAAAT +GAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAGATTTTGGCCTTCCAACAAGGG +AAGGCCAGGGAATTTTCCTCAGAGCAGACCAGAGCCATCAGCCCCRCCAGCRGAAAACTG +GGGGATGGGGGAAGAGATGAACAAGGAACCCTCTCCTCCTTCAGTTTCCCTCAAATCACT +CTTTGGCAACGACCCCTTGTYACAGTAAAAATAGGAGGACAGCTGAAAGAAGCTCTATTA +GATACAGGAGCAGATGATACAGTATTAGAAGAGATAAATTTGCCAGGAAAATGGAAACCA +AAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGGCAATATGATCAAATACYTATA +GAAATTTGTGGAAAAAAGGCTATAGGTACAGTRTTAGTAGGACCTACACCTGTCAACATA +ATTGGACGAAATATGTTGACTCAGATTGGTTGTACTCTAAATTTCCCCATTAGTCCTATT +GACACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGACCAAAGGTTAAACAGTGGCCA +TTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAAGAGATGGAAGAGGAAGGA +AAAATCTCAAAAATTGGGCCTGAGAATCCATACAATACTCCAGTATTTGCTATAAAGAAG +AAGGACAGCACTAAATGGAGGAAATTAGTAGATTTCAGAGAGCTCAATAAAAGAACTCAG +GACTTTTGGGAAGTTCAATTAGGAATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCA +GTAACAGTACTAGATGTGGGAGATGCATATTTTTCAGTTCCTTTAGATGAAAACTTTAGA +AAATATACTGCATTCACCATACCTAGTATAAACAATGAGACACCAGGAATCAGATATCAG +TACAATGTGCTGCCACAGGGATGGAAAGGATCACCGGCAATATTCCAGAGTAGCATGACA +AAAATCTTAGAGCCCTTTAGAATAAAAAATCCAGACATAGTTATCTATCAATACATGGAT +GACTTATATGTAGGATCTGATTTAGAAATAGGGCAGCACAGAACAAAAATAGAGGAGCTA +AGAGCTCATCTATTGAGCTGGGGATTTACTACACCAGATAAAAAGCATCAGAAGGAACCC +CCATTCCTTTGGATGGGATATGAACTCCATCCTGATAGATGGACAGTCCAGCCTATAGAA +CTGCCAGAAAAGGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAAT +TGGGCAAGTCAAATTTATGCAGGGATAAAAATAAAGCAACTGTGTAAACTCCTCAGGGGA +ACTAAAGCACTAACAGAAGTAGTACCACTAACTGAAGAAGCAGAATTAGAATTGGCAGAG +AACAGGGAGATTCTAAAAACCCCTGTGCATGGAGTATATTATGACCCATCAAAAGACCTA +GTAGCAGAAGTACAGAAACAAGGGCAGGACCAATGGACATATCAAATTTATCAAGAGCCA +TTTAAGAATCTAAAAACAGGAAAATATGCCAGAAAAAGGTCTGCTCACACTAATGATGTA +AGACAATTAACAGAAGTGGTGCAAAAAATAGCCACAGAAAGCATAGTTATATGGGGAAAG +ACCCCTAAATTTAGACTACCCATACAAAGAGAAACATGGGAAACATGGTGGATGGAGTAT +TGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTTAATACCCCTCCTCTAGTAAAACTA +TGGTACCAATTAGAAAAAGACCCCATAATAGGAGCAGAGACTTTCTATGTAGATGGGGCA +GCTAGTAGGGAGACTAAGCTAGGAAAAGCAGGATATGTCACTGACAGAGGAAGGCAAAAG +GTAATTTCCCTAACTGAGACAACAAATCAAAAGACTGAATTACACGCGATCCATTTAGCC +TTGAAGGACTCAGGATCAGAAGTAAATATAGTAACAGATTCACAATATGCATTAGGAATC +ATTCAGGCACAACCAGACAGGAGTGAATCAGAAGTAGTCAACCAAATAATAGAGGAGCTA +ATAAAAAAGGAAAAGGTCTACCTATCATGGGTTCCAGCACATAAAGGGATTGGAGGAAAT +GAACAAGTAGATAAATTAGTCAGTTCAGGAATCAGGAAGGTACTGTTTTTAGATGGGATA +GATAAGGCTCAAGAAGAACATGAAAGATATCATAGCAATTGGAGAACAATGGCTAGTGAT +TTTAATTTGCCACCTATAGTAGCAAAGGAAATAGTAGCCAACTGTGATAAATGTCAATTA +AAAGGGGAAGCCATGCATGGACAAGTGGACTGCAGTCCAGGAATATGGCAACTAGATTGC +ACACATCTAGAAGGAAAAGTCATCCTGGTAGCAGTCCACGTGGCCAGTGGATATATAGAA +GCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTTCTGCTAAAGTTAGCA +GGAAGATGGCCAGTAAAAGTAATACACACAGACAATGGTAGTAATTTCACCAGCGCTGCA +GTTAAAGCAGCCTGTTGGTGGGCCAATGTCCGGCAGGAATTTGGGATCCCCTACAATCCC +CAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGCAAATCATAGGAAAGGTA +AGAGATCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTT +AAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCA +ACAGACATACAAACTAAAGAATTACAAAAGCAAATTACAAAAATTCAAAATTTTCGGGTT +TATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGT +GAAGGGGCAGTAGTAATACAGGACAATAGTGATATAAAAGTAGTACCAAGAAGAAAAGCA +AAGATCATTAGAGACTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAG +GATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCATATGTATGTCTCAAAGAAAAC +TAAAAAGTGGTCTTATAGACATCATTATGAAAGCCAGCATCCAAAGGTAAGTTCAGAAGT +GCATGTCCCACTAGGAGAGGCTATCTTAGTAATAAGAACATATTGGGGACTACAGACAGG +AGAAAAGGACTGGCAGTTGGGTCATGGAGTCTCCATAGAATGGAGACAGAGAACATATAG +TACACAAATAGATCCTGACCTAGCAGACCAACTGATTCATCTACACTATTTTGACTGTTT +TTCAGACTCTGCCATAAGAAAAGCCATATTAGGACAAGTAGTTAGACATAGGTGTGAATA +TCCATCAGGACATAACAAGGTAGGATCCCTACAATATTTGGCACTGAAAGCATTAACAAC +ACCAAAAAGAATAAGGCCACCTCTGCCTAGTGTTAAGAAATTGACAGAAGATAGATGGAA +CAAGCCCCAGAAGATCAAGGACCACAGAGAGAACCCCACAATGAATGGACATTAGAACTG +TTAGAGGAGCTTAAAAATGAAGCTGTCAGACATTTTCCTAGGCCTTGGCTCCATGGCTTA +GGACAGTACATTTATTACACTTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGA +GTTTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGC +ATTATACCAGGGAGAAGAGGCAGGAATGGAGCCAGTAGATCCTAACCTAGAGCCCTGGAA +TCATCCGGGAAGTCAGCCTACAACTGCTTGTAACAATTGTTACTGTAAAAAWTGTTGCTG +GCATTGCCAACTATGCTTTCTGAAAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCG +GAAGCACAGACGAGGAACTCCTCAGAGCCGTGAGRATCATCAATATCCTATACCAGAGCA +GTAAGTACTAAGTATATGTAATGTTACCTTTGGAAATTAGTGCAATAGTAGGACTGGTAG +TAGCTTTAATAGCAGCAATAGTAGTGTGGACTATAGTAGCTATAGAATTTAGGAGAATAC +TAAGGCAAAGAAAAATAGACAGRTTAGTTAAGAGAATAAGGGAAAGAGMAGAAGACAGTG +GAAATGAGAGTGAAGGAGACACAGATGARTTGGCCAAACTTGTGGAAATGGGGGACTTTG +ATCCTTGGGTTGGTGATAATTTGTAGTGCCTCAAACAACTTGTGGGTTACAGTTTATTAT +GGGGTTCCTGTGTGGAGAGATGCAGATACCACTCTATTTTGTGCATCAGATGCCAAAGCA +CATGAGACAGAAGTGCACAATGTCTGGGCCACACATGCCTGTGTACCCACAGACCCCAAC +CCACAAGAAATACACCTGGAAAATGTAACAGAAAATTTTAACATGTGGAAAAATAACATG +GTAGAGCAGATGCAGGAGGATATAATCAGTTTATGGGATGAAAGTCTAAAGCCATGTGTA +AAGTTAACTCCTCTCTGTGTTACTTTAAATTGTACCAATGRAAYCAAKGTCAGGAATGGA +ACCGAGGCCAACAACATAACAGGAACTAACATAACAGAAACAGATGAAGTAAAAAACTGT +ACTTTTAATGTAACCACAGAAATAAGGGATAAGAAGCAGAAGGTCCGTGCACTTTTTTAT +AAGCTTGATGTAGTACAAATGGGGAATAAGAGTAATGAGTATAGGTTAATAAATTGTAAT +ACTTCAGTCATTAAGCAGGCTTGTCCAAAGATATCCTTTGATCCAATTCCTATACATTAT +TGTACTCCAGCTGGTTATGTGATTTTAAAGTGTAATGAAAAGGATTTCAATGGGACAGGA +CCATGTAAAAATGTCAGCTCAGTACAATGCACACATGGAATTAAGCCAGTGGTATCAACT +CAATTGCTGTTAAATGGCAGTCTAGCAGAAGGCAAGATAATAATCAGATCTGAAAACCTC +ACAAACAATGCTAAAACCATAATAGTGCACCTTAATAAATCTGTAGAAATCAATTGTACC +AGACCCTCCAACAATAGAAGAACAAGTGTACGTATAGGACCAGGACAAGTATTCTATAGA +AATGGAGAAATAATAGGAGATATAAGAARAGCATCTTGTGAGGTTAATAGAACAGAATGG +AATAAAGTTTTAAAACAGGTAAAGCAAAGGTTAAGAGAGCACTTTAATAAGAATATAACC +TTTAAACCAYCTTCAGGAGGAGATCTAGAAGTCACAATGCATCATTTTAATTGTAGAGGG +GAATTTTTCTATTGTAATACAACACAACTGTTTAATAATATTGTTAATAATRCTAACAAT +AMTGGAACTATCAGACTTCCATGCAAAATAAAGCAAATTATAAACATGTGGCAGGAAGTA +GGGCAAGCAATGTATGCTCCTCCCATCAGTGGGAAAATTAATTGCATATCAAACATTACA +GGAATACTATTGACAAGAGATGGTGGTAATGCTAGTGGTAATGCTAGCGAGGAGATCTTC +AGACTTACAGGAGGAAATATAAAGGACAATTGGAGAAATGAATTATATAAATATAAAGTA +GTACAAATTGATCCACTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTAGTGGAGAGA +GAAAAAAGAGCAGTGGGAATAGGAGCTATGATCTTTGGGTTCTTAGGAGCAGCAGGAAGC +ACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATA +GTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCGCAGCAGCATCTGTTGCAACTC +ACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAA +GATCAAAGGTTCCTAGGACTTTGGGGCTGCTCTGGAAAAACCATCTGCACCACTGCTGTG +CCCTGGAACTCCACTTGGAGTAATAAATCTTTTGATGAGATTTGGAACAACATGACATGG +ATAGAATGGGAAAGAGAAATTAGCAATTACACAAGTCAAATCTATGAGATACTTACAGAA +TCGCAGAACCAGCAGGAAARGAATGAAAAGGAGTTGTTAGAATTGGATAAGTGGACAAGT +CTGTGGAATTGGTTTGACATATCAAATTGGCTGTGGTATATAAAAATATTTATAATGATA +GTAGGAGGTTTAATAGGTTTAAGAATAATTTTTGCTGTGCTTTCTATAGTAAATAGAGTT +AGGCAGGGATACTCACCTTTGTCCTTCCAGACCCCTACCCATCATCAGAGGGAGGAACCC +GACCGACCCGGAAGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAGACAGATCAGTGAGA +TTAGTGAGCGGATTCTTAGCACTTGTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCAGC +TACCACCGCTTGAGAGACTTCACCTTGATTGCAGCGAGGACTGTGGAACTTCTGGGACAC +AGCAGTCTCAAGGGACTGAGACGGGGGTGGGAAGGCCTCAAATATCTGGGGAATATTCTG +TTGTATTGGATCCAGGAACTAAAAACTAGTGCTATTTCTTTGTTTGATACTATAGCTATA +GCAGTAGCGGGGTGGACCGATAGGGTTATAGAAGYAGCACAAGGAGCTTGGAGAGCCATT +CTCCTCATACCTAGAAGAATCAGACAGGGCTTAGAAAGGGCTTTGCTATAACATGGGAGG +CAAGTGGTCAAAATGGCCTCAGGTCAGGGAAAGAATAAGACAAACTCCTCCAGCAGCAGA +AGGAGTAGGAGCAGTATCTCAAGATCTAGCTAAACATGGAGCAGTAACAAGTAGTAATAT +GAATAATGCTGATGATGTCTGGGTGAGAACACAAGAGGAAGAAGAGGAGGTAGGCTTTCC +AGTCAGGCCCCAGGTGCCCCTGAGACCAATGACTTATAAGGAAGCTTTTGATCTTAGCTT +CTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAGTTTACTCCAAGAAAAGACAAGAGAT +CCTTGATTTATGGGTCTATAATACACAGGGCTTCTTCCCTGACTGGCAWAACTACACACC +AGGGCCAGGGRTCAGATACCCACTGTGTTTTGGATGGTGCTTCAAGTTAGTACCAGTTGA +CCCAAGAGAAGTAGAGGAGGACAACAAAGGAGAAAACAACAGCCTGTTACACCCCATGAG +CCAGCATGGAATGGAGGACGAAGAGAGAGAAGTGCTGATATGGAAGTTTGACAGTGCCCT +AGCAAGACAACACATAGCCCGACAGAAGCATCCGGAGTTCTATAAAGACTGCTGACAAAG +AAGTTTCTGACTAGGACTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGTCGGGGCGGAGT +TGGGGAGTGGCTAACCCTCAGATGCTGCATAAAAGCAGCCGCTTTCTGCTTGTACTGGGT +C +>CRF01_AE.TH.2008.0.AA067a_WG12.JX447458 JX447458 +TGGTAACTAGAGATCCCTCAGACCACTCTAGACTGAGTAAAAATCTCTAGCAGTGGCGCC +CGAACAGGGACTTGAAAGCGAAAGTTAATAGGGACTCGAAAGCGAAAGTTCCAGAGAAGT +TCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGCGGCGACT +GGTGAGTACGCCAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGT +CAGTATTAAGTGGGGGGAAATTAGATGCATGGGAAAAAATTCGGTTACGGCCAGGGGGAA +GGAAAAAATATAGAATGAAACATTTAGTATGGGCAAGCAGAGAGTTAGAAAGATTCGCAC +TTAACCCTGGCCTGTTAGAAACAGCAGAAGGATGCCAACAAATCATAGAACAGTTACAGT +CAACTCTCAAGACAGGATCAGAAGAACTTAAATCCTTATTTAATACAGTAGTAACCCTCT +GGTGTGTACACCAAAGGATAGAGGTAAGAGACACCAAGGAAGCTTTAGATAAAATGGAGG +AAGCACAAAAGAGGAGCCAGCAAAAGACACAGCAGGCAGCAGCTGGCACAGGAAGCAGCA +GCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATGGTACATCAGC +CCGTATCACCTAGAACTTTGAATGCATGGGTAAAAGTAGTAGAAGAGAAGGGTTTTAACC +CAGAAGTAATACCCATGTTCTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAATA +TGATGCTAAATATAGTGGGGGGACACCAGGCAGCAATGCAAATGTTAAAAGAAACCATCA +ATGAGGAAGCTGCAGAATGGGATAGGGTACACCCAGTACATGCAGGGCCTATTCCACCAG +GCCAGATGAGGGAACCAAGAGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAAC +AAATAGGGTGGATGACAAGCAATCCATCTATCCCAGTGGGAGACATCTATAAAAGGTGGA +TAATCCTGGGATTAAATAAGATAGTAAGAATGTATAGCCCTGTTAGCATCTTGGACATAA +GACAAGGGCCAAAGGAACCCTTCAGAGACTATGTAGATAGATTCTATAAAACTCTCAGAG +CTGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACCTTGCTAGTCCAAAATG +CGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGAGCTACATTAGAAGAAA +TGATGACAGCATGCCAGGGGGTAGGAGGACCTAGCCATAAAGCAAGGGTTTTGGCTGAGG +CAATGAGCCAAGCACAAGCACAAAATGTAAATATACTGATGCAGAGAGGCAATTTTAAGG +GCCAAAAAAGAATTAAATGCTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAACTGCA +GGGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACT +GCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAAGGGAAGGCCGGGAA +ATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCTGCAGAAAACTGGAGGATGGAGG +AAGAGAGGACCTCCTTACAGAAGCAGGAACAGAAAGACAAGGAACATCCTCCTCCCTTAG +TTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAGTAAAAATAGAAGGACAGTT +GAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTGGAAGATATAAATTTGCC +AGGAAAGTGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTAAGGCAATA +TGATCAGATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTATTAGTAGGACC +TACGCCTGTCAACATAATTGGACGAAATATGTTGACTCAGATTGGTTGTACCTTAAATTT +CCCAATTAGTCCTATTGACACTGTACCAGTAACATTAAAGCCAGGAATGGATGGACCAAA +GGTTAAACAGTGGCCACTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAAGA +GATGGAAGAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGT +ATTTGCTATAAAGAAAAAGGACAGCACCAAATGGAGGAAATTAGTAGATTTCAGAGAGCT +CAATAAAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCGCATCCAGCAGGTTT +AAAAAAGAAAAAATCAGTGACAGTACTAGATGTGGGAGATGCATATTTTTCAGTTCCTTT +GGATGAAAGCTTTAGAAAGTATACTGCATTCACCATACCTAGTACAAACAATGAGACACC +AGGAATTAGATATCAATACAATGTGCTGCCACAGGGATGGAAGGGATCACCGGCAATATT +CCAGAGCAGCATGACAAAAATCTTAGAGCCCTTTAGAATAAAAAATCCAGAAATGATTAT +TTATCAATACATGGRTGACCTGTATGTAGGATCTGATTTAGAAATAGGGCAGCACAGAAT +AAAAATAGAGGAGCTAAGAGCTCATCTATTGAGCTGGGGATTTACTACACCAGACAAAAA +GCATCAGAAGGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGACAAATGGAC +AGTCCAACCTATAGAACTGCCAGAAAAAGACAGCTGGACTGTCAATGATATACAGAAATT +AGTGGGAAAACTAAATTGGGCCAGTCAAATTTATGCAGGGGTTAAGGTAAAGCAACTGTG +TAAACTCCTCAGGGGAGCTAAGGCACTAACAGACATAGTACCATTGACTGAAGAAGCAGA +ATTAGAATTGGCAGAGAACAGGGAGATTCTAAAAACCCCTGTGCATGGAGTATATTATGA +CCCATCAAAAGACTTAGTAGCAGAAGTACAGAAACAAGGGCAGGACCAATGGACATATCA +AATTTATCAAGAGACATTTAAAAATCTGAAAACAGGAAAATATGCAAGAAAAAGGTCTGC +TCACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAAATAGCCACAGAAAGCAT +AGTAATATGGGGAAAGACCCCTAAATTTAGATTACCCATACAAAGAGAAACATGGGAAAC +ATGGTGGACGGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAATTTGTCAATACCCC +TCCTCTAGTAAAATTATGGTACCAATTAGAAAAAGACCCCATAGTAGGAGCAGAGACTTT +CTATGTAGATGGGGCAGCTAATAGGGAAACTAAGCTAGGAAAAGCAGGGTATGTCACTAA +CAAAGGAAGGCAAAAGGTAGTTTCCCTAACTGAGACAACAAATCAAAAGACTGAATTACA +TGCAATCTACTTAGCCTTGCAGGATTCAGGAGCAGAAGTCGATATAGTAACAGACTCACA +ATATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGAATCAGAAGTAGTCAACCA +AATAATAGAGGAACTAATAAAAAAGGAAAAAGTCTACCTGTCATGGGTACCAGCACACAA +AGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCAGGAAYCAGGAAGGTACT +ATTTTTAGATGGGATAGATAAGGCTCAAGAAGAACATGAAAGATATCACAGCAATTGGAG +AGCAATGGCTAGTGATTATAATTTGCCACCTGTAGTAGCAAAGGAAATAGTAGCCAACTG +TGATAAATGTCAGCTAAAAGGGGAAGCTATGCATGGACAAGTAGACTGTAGTCCAGGGAT +ATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTCATCCTGGTAGCAGTTCACGTGGC +CAGTGGATATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTT +TCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAATACACACAGACAACGGTAGCAA +TTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCCAATGTCCGACAGGAATTTGG +GATCCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAA +AATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGT +ATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAAT +AATAGACATAATAGCAACAGACATACAAACTAGAGAATTACAAAAACAAATTACAAAAAT +TCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAA +ACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGACAATAGTGATATAAAAGTAGT +ACCAAGAAGAAAAGCAAAAATCATCAGGGATTATGGAAAACAGATGGCAGGTGATGATTG +TGTGGCAGGTAGACAGGATGAGGATTAAAACATGGAACAGTATAGTAAAACATCATATGT +ATATCTCAAAGAAAGCTAAAAAGTGGTCTTATAGACATCATTATGAAAGCCAGAATCCAA +AAGTAAGTTCAGAAGTACACATCCCACTAGAAGAGGCAAAATTAGTAATAAAAACATATT +GGGGTCTGCAGACAGGAGAAAAGGACTGGCAATTGGGTCATGGAGTCTCCATAGAATGGA +GGCAGAGAAACTATAGCACACAAATAGATCCTGACCTAGCAGACCGACTGATTCATCTAC +AATATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAAGCCATATTAGGACAAGTAGTTA +GACGTAGGTGTGAATATCCATCAGGACATAACAAGGTAGGATCCCTACAATATTTGGCAC +TGAGAGTATTRACGACACCAAAAAAGATAAAGCCACCTCTGCCTAGTGTGRAGAAATTAA +CAGAAGATAGATGGAACAAGCCCCAGAGGATCAGGGGCCACAGAGAGAACCCCACAATGA +ATGGGCATTAGAACTGTTAGAGGAACTTAAAAATGAAGCTGTGAGACACTTTCCTAGGCC +CTGGCTCCATGGCTTAGGACAGTACATCTATAATAATTATGGGGATACTTGGGAAGGGGT +TGAAGCTATAATAAGAATTTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCA +ACATAGCAGAATAGGCATTATGCCAGGGAGAAGAGGCAGGAATGGAGCCGGTAGATCCTA +ACCTAGAGCCCTGGAATCATCCGGGAAGTCAGCCTACAACTAATTGTAGCAATTGTTACT +GTAAAAAATGTTGCTGGCATTGCCAACTATGCTTTCTGAAAAAAGGCTTAGGCATCTCCT +ATGGCAGGAAGAAGCGGAAGCACCGACGAAGAACTCCTCAGAACAGTAAAGATCATCAGA +ATCCTATACGAAAGCAGTAAGTAATAAGTATATGTAATGACACCTTTGGAAATTAGTGCA +ATAGTAGGACTGATAGTAGCTCTAATCTTAGCAATAGTAGTGTGGACTATAGTAGCTCTA +GAATATAAGAAAATACTAAGGCAAAGAAAAATAGACAGGTTAATTAAGAGAATAGGAGAA +AGAGCAGAAGACAGTGGAAATGAAAGTGAAGGGGATATGGATGACTTGGCCAAACTTGTG +GAGATGGGTGACTTTGATCATTGGGTTGGTGATAATTAGTAGTGCCTCAGACAACTTGTG +GGTTACAGTTTATTATGGAGTTCCTGCGTGGAAAGATGCAAATACCACCCTATTTTGTGC +ATCAGATGCCAAGGCACATGAAACAGAAGTGCACAATGTCTGGGCCACATATGCCTGTGT +ACCCACAGATCCCAACCCTCAAGAAATACCCATGGAAAATGTAACAGAAAATTTTCACAT +GTGGAAAAATAACATGGTAGAGCAGATGCAGGAGGATGTAATCAGTTTATGGGATGAAAG +TCTAAAGCCATGTGTGAAGTTAACCCCTCTCTGCGTTACTTTAAATTGTACCGAGGCTAA +AATTACTTGTAATTCCACTGTCACTTCCAATATCACTTCCAATAACACTTGCATAGAATT +CATAAAAAATGAAGTAAAAAATTGTTCTTTTAATATGACCACAGAAGTGACAGATAAGAA +GAAGCAGGTCCATGCACTTTTTTATAGGCTTGATATAGTACAGATGGGAGATGAGAGTAC +GTATAGGTTAATAAATTGTAATACTTCAGTCATTAAGCAGGCTTGTCCAAAGATATCCTT +TGATCCAATTCCTATACATTATTGTACTCCAGCTGGTTATGCGATTCTAAAGTGTAATGA +GAAGAATTTCACTGGGACAGGGCCATGTAAAAATGTCAGCTCAGTACAATGCACACATGG +AATTAAGCCAGTGGTATCAACTCAATTGCTGTTAAATGGCAGCCTAGCAGAAGAGGAGAT +AGTAATCAGATCTGAAAATCTCACAAACAATGTCAAAACCATAATAGTACACCTTAATAA +ATCTGTAGAAATCAGTTGTACTAGACCCTCCAACAATACAAGAACAAGTATATCTATAGG +ACCAGGACGAGCATTCTATAGAATAGGAGACATAACAGGAGATGTAAGGAAAGCATATTG +TGAGATTAATGGAACAAAATGGAATGAAACTTTAAAGCAGGTAGCTGGAAAATTAAAAGA +GTACTTTAATAAGACAATACTCTTTGAACCACCCTCAGGAGGAGATCTAGAAATTACAAT +GCATCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACAACAAAATTGTTTAATAG +TACAGAAAATGGGACCAAGGAGGAGTTTAAGGGCACTAATGGCACTATCATACTTCCATG +CAAGATAAAGCAAATTGTAAGAATGTGGCAGGGAACAGGGCAAGCAATGTATGCTCCTCC +CATCAGTGGAGCAATTAATTGTGTATCAAATATTACAGGAATACTATTAACAAGAGATGG +TGGTAATGCTAATAACTCTAACTCTACTGAGAACTCTACTGAGATATTCAGACCTGGAGG +AGGAGATATAAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAATACAAATTGA +ACCACTAGGAATAGCACCCACCAAGGCAAGAAGAAGAGTGGTGGAGAGAGAGAAAAGAGC +AGTGGGAATAGGAGCTATGATCTTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGC +GGCGTCAATAACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCA +AAGCAATTTGCTGAGGGCTATAGAGGCGCAGCAGCATATGTTGCAACTCACAGTCTGGGG +CATTAAACAGCTTCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAAGATCAACAGTT +CCTAGGACTTTGGGGCTGCTCTGGAAAAGTCATCTGCACCACTAATGTGCCCTGGAACTC +CACTTGGAGTAATAAATCTTTGAGTGAGATTTGGGAAAACATGACATGGGTAGAATGGGA +GAGAGAAATTAGCAATTACACAAGACAAATATATGAGATACTCACAGAATCGCAGAACCA +GCAGGATAAGAATGAAAAAGATTTGTTAGAGTTGGACAAATGGGCAAGTCTGTGGAATTG +GTTTAGCATAACAAAATGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTT +AATAGGTTTAAGAATAATCTTTGCTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATA +CTCACCTTTGTCTTTCCAGATCCCTTCCCATCATCAGAGGGAACCCGACAGGCCCGAAAG +AATCGAAGAAGGAGGTGGCGAGCAAGGCAGAGGCGGATCAGGGAGATTAGTGAGCGGATT +CTTATCACTTGCCTGGGACGACCTACGGAGCCTGTGCCTCTTCTGCTACCACCTCTTGAG +AGACTTCATCTTGATTGCAGCGAGGACTCTGAGCACGGGACTGAGACGGGGGTGGGAAGT +CCTCAAATATCTGGGGAATCTTCTGTTATATTGGAGCCAGGAACTAAAAATTAGTGCTAT +TTCTTTGTTTGATGCTACAGCAATAGCAATAGCGGGGTGGACAGATAGGGTTATAGAAGT +AGTGCAAAGAGCTTGCAGAGCTGTTCTCCACATACCTAGAAGAATCAGACAGGGCTTAGA +AAGGGCTTTGCTATAACATGGGAGGCAAGTGGTCAAAAAGTAGCATAGTGGGATGGCCTC +AGGTCAGGGAAAGAATAAGGCGAACTCCTCCAGCAACAAAAGAAGTAGGAGCAGTATCTC +AAGATCTAGATAAACATGGAGCAATAACAAGTAGTAATATAACTAATGAGGATTGTGGCG +GGCTGAGAGCACAAGAGGAAGAGGACGAAGGAGTAGGCTTTCCAGTCAGGCCGCAGGTAC +CTTTAAGACCAATGACTTTTAAGGGAGCTTTTGATCTTAGCTTCTTTTTAAGAGAAAAGG +GGGGACTGGAGGGGCTAATTTACTCCAAGAGAAGACAAGAAATCCTTGACTTATGGGTCT +ATCATACACAAGGCTACTTCCCTGATTGGCACAACTATACACCAGGGCCAGGAATCAGAT +ACCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAAGAGAAGTAGAGG +AGGACAACAAAGGGGAAAACAACTGCCTGTTACACCACATGAGCCAGCATGGAATAGAGG +ACGAAGAAGGAGAAGTGCTGATGTGGAAGTTTGACAGCGCCCTAGCACGAAGACACATAG +CCCGAGAACAGCACCCAGAGTTCTATAAAGACTGCTGACAAAGAAGTTTCTAACTGGGAC +TTCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCGGGGCGGAGTTGGGGAGTGGCTAACCC +TCAGATGCTGCATAAAAGCAGCCGCTTTTCGCTTGTACTGGGTCTCTCTTGTTAGACCAG +GTCGAGCCCGGGAGCTCTCTGGCTAACAGGGAACCCACTGCTTA +>CRF01_AE.GB.2014.0.14727_1_60.3.MF109621 MF109621 +ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGG +TTACGGCCAGGGGGAAAGAAAAAATATCACATAAAACATATAGTATGGGCAAGCAGAGAG +TTGGAAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAGCAACTA +ATAGAACAGCTACAGTCAACTCTCCAGACAGGATCAGAAGAACTTAAATCATTATTTAAT +ACAATAGCAACCCTCTGGTGCGTACACCAAAGGATAGAGATAAAAGACACCAAGGAAGCT +CTAGATAAAATAGAGGAAGTACAAAGAAAGAGTCAGCAAAAGACACAGCAGGCAGCGGCT +GGCACAGGAAGCAGCAGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCGCAAGGC +GCAATGGTACATCAAGCCATGTCACCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAA +GAAAAGGGTTTTAACCCAGAAGTAATACCCATGTTCTCAGCACTATCAGAAGGAGCCACC +CCACAAGACATAAATATGATGCTAAATATAGTGGGGGGACATCAGGCAGCAATGCAAATG +TTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGGTTACACCCAGTACATGCA +GGGCCTATTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGATATAGCAGGAACTACT +AGTACCCTTCAAGAACAAATAGGATGGATGACAAGCACTCCACCTATCCCAGTAGGGGAC +ATCTATAAAAGGTGGGTAATCCTGGGATTAAATAAGATAGTAAGAATGTACAGCCCTACT +AGCATTTTGGACATAAAACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTT +TATAAAACTCTCAGGGCAGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACC +TTATTAGTCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGGACAGGA +GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTAGCCATAAGGCA +AGGGTTTTGGCTGAGGCAATGAGCACAGTACAACATACAAATATAATGATGCAGGGAGGC +AATTTTAAGGGCCAGAGAAAAATTAAGTGTTTCAATTGTGGCAAAGAAGGACACCTAGCC +AGAAATTGCAGAGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGGAAAGAAGGACATCAA +ATGAAAGACTGCAATGAAAGACAGGCTAATTTTTTAGGAAGACTTTGGCCTTCCCACAAG +GGAAGGCCAGGGAATTTTCCTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGCAGAAAAC +TGGGGGATGAGGGAAGAGATGACTTCCTCACCGAAGCAGGAGCAGAAAGACAGGGAACCT +TCCTTTAGTTTCCCTCAAATCACTCTTTGGCAACGACCCATTGTTACCGTAAAAATAGGA +GGACAGCTGAGAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATA +AATTTGCCAGGAAAATGGAAACCAAAAATGATAGGAGGAATTGGAGGTTTTATTAAAGTA +AGGCAATATGATCAGATATCTATAGAAATTTGTGGAAAAAAGGCTGAAGGTACAGTGCTA +GTAGGACCTACACCCGTCAATATAATTGGACGAAATATATTGACTCAGCTTGGTTGTACT +TTAAATTTCCCAATTAGTCCTATTGACACTGTACCAGTAACATTAAAGCCAGGAATGGAT +GGACCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAAGCATTAACAGAAATT +TGTGAGGATATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAAT +ACTCCAGTATTTGCCATAAAGAAAAAGGATGGCACCAAATGGAGGAAATTAGTAGATTTC +AGAGAACTCAATAAAAGAACTCAGGATTTTTGGGAAGTTCAATTAGGAATACCACATCCA +GCAGGTTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGAGATGCATATTTTTCA +GTTCCTTTAGATGAAAACTTTAGAAAGTATACTGCATTCACCATACCTAGTACAAACAAT +GAGACACCAGGAATCAGATATCAGTATAATGTGCTACCACAGGGATGGAAAGGATCACCA +GCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGAACAAAAAATCCAGAC +ATGGTTATCTATCAATACATGGATGACTTGTATGTAGGATCTGATTTAGAAATAGGGCAG +CACAGAGCGAAAATAGAGGAGCTAAGAGCTCATCTATTGAGCTGGGGATTTACTACCCCA +GACAAAAAACATCAGAAGGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGAC +AGATGGACAGTCCAGCCTATAGAACTGCCAGAAAAAGACAGCTGGACTGTCAATGATATA +CAGAAATTAGTGGGAAAGCTAAATTGGGCAAGTCAAATTTATGCAGGGATTAAAGTAAAG +CAACTATGTAGACTCCTCAGAGGAACTAAAGCATTAACAGACATAGTACCACTGACTGAA +GAAGCAGAATTAGAGTTGGCAGAGAACAGGGAGATTCTAAAAACCCCTGTGCATGGAGTA +TATTATGACCCAGCAAAAGACTTAGTAGCAGAAGTACAAAAACAAGGGCAGGACCAATGG +ACCTATCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCCAGAAAA +AGGTCTGCTCACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAAATAGCCACA +GAAAGCATAGTGATATGGGGAAGGACCCCTAAATTTAGATTACCTATACAAAGAGAAACA +TGGGAGACATGGTGGACAGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAATTTGTT +AATACCCCTCCTTTAGTAAAATTGTGGTACCAATTAGAAAAAGAACCCATATTAGGAGCA +GAGACTTTCTATGTAGATGGGGCAGCTAGTAGAGAGACTAAGCTAGGAAAAGCAGGGTAT +GTCACTGACAGAGGAAGGCAAAAGGTAATTCATCTAACTGAGACAACAAATCAAAAGACT +GAATTACAGGCGATCCATTTAGCCTTGCAGGATTCAGGATCAGAAGTAAATATAGTAACA +GACTCCCAATATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAGTCAGAAATA +GTCAACCAAATAATAGAGGAGCTAATAAAAAAGGAAAAGGTCTACCTGTCATGGGTACCA +GCACATAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCAGGAATCAGG +AAGGTGCTATTTTTAGATGGAATAGATAAGGCTCAAGAAGAACATGAAAGATATCACAGT +AATTGGAGAACAATGGCTAGTGATTTTAATTTGCCACCTGTAGTAGCAAAGCAAATAGTA +GCCAACTGTGATAAATGTCAACTAAAAGGGGAAGCTATGCATGGACAAGTGGACTGTAGT +CCAGGAATATGGCAATTAGATTGCACGCATCTAGAAGGAAAAGTCATCCTGGTAGCAGTC +CACGTGGCCAGTGGGTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACA +GCATACTTTCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAATACACACAGACAAC +GGTAGCAATTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCCAATGTCCATCAG +GAATTTGGGATCCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAGGAA +TTAAAGAAAATCATAGGGCAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTACAA +ATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGG +GAAAGAATAATAGATATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATT +ACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGA +CCAGCAAAACTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGACAATAGTGATATA +AAAGTGGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGT +GATGATTGTGTGGCAGGTGGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACA +TCATAAATATGTCTCAAAGAAAGCTAGAAAGTGGGTTTATAAACATCACTATGAAAGCCA +GAATCCAAAGGTAAGCTCAGAAATACATATCCCACTAGGAGACTATAATAGTAATAAAAA +CATATTGGGGTCTGCAGACAGGAGAAAAGGACTGGCACTTGGGTCATGGAGTCTCCATAG +AATGGAGGCAGACAAATTATAGCACACAAATAGATCCTGACCTAGCAGACCGACTAATTC +ATCTACAATATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAAGCTACATTAGGACAAG +TAGTTAGACATAGGTGTGAATACCCATCAGGACATAACAAGGTAGGATCCCTACAATATT +TGGCACTGAAAGCATTAACAACACCAAAAAAGATAAAGCCACCTCTGCCTAGTGTTAGGA +AATTAACAGAAGATAGATGGAACAAGCCCCAGAAGACCAGGGACCACAGAGAGAACCCCA +CAATGAATGGACACTAGAACTGTTAGAGGAGCTTAAAAATGAAGCAGTCAGACATTTTCC +TAGGCCATGGCTCCATGGCTTAGGACAATACATTTATAACACTTATGGGGATACTTGGGA +AGGGGTTGTAGCTATAATAAGAATTTTGCAACAACTGCTGTTTGTTCATTTCAGAATTGG +GTGTCAACATAGCAGAATAGGCATTTTGCCAGGGAGAAGAGGCAGGAATGGAGCCGGTAG +ACCCTAACCTAGAGCCCTGGAAACATCCAGGGAGTCAGCCTGCAACCGCTTGTAGCAAGT +GTTACTGTAAAAAATGTGTCTGGCATTGTCAACTATGCTTTCTGAAAAAAGGCTTAGGCA +TCTCCCATGGCAGGAAGAAGCGGAAGCACCGACGCGGAACTTCTCAGAACAGTAAGGATC +ATCAAGACCCTATACGAAAGCAGTAAGTGTATATGCTATGNCTTTAGAAATTAGTGCAAT +AGTAGGACTGGTAGTAGCGCTAATCTTAGCAATAGTAGTGTGGACTATAGTAGGTATAGA +ACTAAGTAAAATACTGAGACAAAGAAAAATAGACAGGATAATTGAAAGAATAAGAGAAAG +GGCAGAAGATAGTGGAAATGAGAGTGAAGGAGACACAGAGGAATTGGCCAAACTTGTGGA +AATGGGGACTTTGATCCTTGGGTTGGTGATGATGTGTAGTGCAGCAAACTTGTGGGTTAC +AGTTTATTATGGGGTTCCTGTGTGGAGAGATGCGGAAACTACCCTATTTTGTGCATCAGA +TGCTAAAGCACATGACACAGAAGCGCACAATGTCTGGGCCACACATGCCTGTGTACCCAC +AGACCCCAACCCACAAGAAATACACATGGAAAATGTAACAGAAAATTTTAACATGTGGAA +AAATAAAATGGTAGACCAGATGCAGGAGGATGTAATCAGTTTATGGGATCAAAGTCTAAA +GCCATGTGTAAAGTTAACTCCTCTCTGTGTTACTTTAAATTGTATCTTCCAGTAGTGTAA +ACAGTAGTAGAAATGAAGTAAGAAACTGTTCTTTTAATATGACCACAGAACTAAGAGATA +AGAGGAAACAGGTCTATGCACTTTTTTATAAGATTGATATAGTACCAATNTATAGGTTAA +TAAATTGTAATACTTCAGTCATTAAGCAGGCTTGCCCAAAGATGTCCTTTGAACCAATTC +CTATACATTATTGTACTCCAGCTGGTTATGCGCTTTTAAAGTGTAATGATAAAAATTTTA +ATGGGACAGGGCCATGTAAAAATGTCAGTTCAGTACAATGCACACATGGAATTAGGCCAG +TAGTATCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGAGGAGATAATAATCAGGT +CTGAAAATATCACAAACAATGCTAAAATCATAATAGTGCACCTTAATAAAACTGTAGAAA +TCAATTGTACCAGACCCTCCAACAATACAAGAACAAGTATGACTAGAGGACCAGGACACG +TATTCTATAGAACAGGAGATATAATAGGAGATATAAGAAAAGCATATTGTGAGGTCAATA +GAACAAAATGGAATGAAACTATAACACAGGTAGCTAGAAAATTAAGAGAACACTTTAATA +AGACAATAGAGTTTCAACCACCCTCAGGAGGAGATCTAGAAATTACAACACATCATTTTA +ATTGTAGAGGGGAATTTTTCTATTGCAATACAACAAACCTGTTTAATATCATACTTCCAT +GCAGAATAAAGCAAATTGTAAACATGTGGCAGGGAGTAGGACAAGCAATGTATAATCCTC +CCATCAGAGGAATAATTAATTGTGTATCAAATATCACAGGAATACTGTTGACAAGAGATG +GTGGNGAGACCTTCAGACCTGGAGGAGGAAACATAAAGGACAATTGGAGAAGTGAATTAT +ACAAATATAAAGTAGTACAAATTGAACCACTAGGAATAGCACCCTCCAAGGCAAGGAGAA +GAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTATGATCTTTGGGTTCTTAG +GAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAAGCCAGACAAT +TGTTGTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCGCAACAGC +ATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGG +AAAGATACCTAAAAGATCAAACGTTCCTAGGACTTTGGGGCTGCTCTGGAAAAACTATCT +GCACCACCAATGTGCCCTGGAACTCCACTTGGAGTAATAAATCTTATGATGATATTTGGA +ACAACATGACATGGACACAATGGGAGAGAGAAATTAGCAATTACACAAACCACATATATA +CAGTACTCACAGAATCGCAGAACCAGCAAGACAGGAATGAAAAGGATTTGCTAGAATTGG +ATAAATGGGCAAGTCTGTGGAGCTGGTTTGATATATCAAACTGGCTGTGGTATATAAAAA +TCTTTATAATGATAGTAGGAGGTTTAATAGGTCTAAGAATAATTTTTGCTGTGCTTTCTA +TAGTAAATAGAGTTAGGCAGGGATACTCACCTTTGTCTTTCCAGACCCCTACCCATCAAC +AGAGGGAGCAGACAGGCCCGAAAGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAAACAG +ATCGATTCGATTTGCGGGCGGATTCTTAGCTCTTGTCTGGGACGACCTACGGAGCCTGTG +CCTCTTCAGCTACCACCTCTTGAGAGACTTCACCTTGATTGCAGCGAGGACTGTGGAACT +CCTGGGACGCAGGGGGTGGGAAGGCCTCAAATATCTGGGGAATCTTCTGATATATTGGAG +CCAGGAATTACAAACTAGTGCTGTTTCTTTGTTTGATACTATAGCAGTAGCAGTAGCAGG +GTGGACAGATAGGGTTATAGAAGTAGCACGAGGAGCTGGAAGAGCCATTCTCCATATACC +TAGAAGAATCAGACAGGGTTTAGAAAGGGCTTTGCAATAACATGGGAAACAAGTGGTCAA +AAGGATGGTCTCAGGTCAGGGAAAGAATAAGACAAGCAGAAGGAGTAGGAGCAGTCTCTC +AAGATCTAGCTAGACATGGAGCAGTAACAAGTAGTAATATAAATAATCCTGATCTTGTCT +GGCTGGAAGCACAAGAGGAGGAGGTAGGCTTTCCGGTCAGGCCGCAAGTACCCCTAAGAC +CAATGACTTATAAAGCAGCTGTTGATCTTAGCTTCTTTTTAAAAGAAAAGGGGGGACTGG +AAGGGCTAATTTACTCTGAGAAAAGAAAAGAGATCCTTGACTTATGGGTTTATCATACAC +AAGGCTTCTTCCCTGATTGGCATAACTACACACCAGGGCCAGGGATTAGATTCCCACTGT +GTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGACCCAAGAGAAGTAGAGGAGGACACCA +AAGGAGAAAACAACTGCCTGTTACACCCCATGAGCCAACATGGACAAGAAGACGGAGAAC +GACAAGTGCTGATGTGGAAGTTTGACAGTGCCCTAGCACGAAGACACATAGCCCGAGAAC +TGCATCCAGATTACTAG +>CRF02_AG.NG.2009.0.09NG_SC61.JN248592 JN248592 +GTGCGAGAGCGTCAGTGTTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTGA +GGCCAGGAGGAAAGAAACAATATAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGG +AAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAGCTAATGG +AACAGTTACAATCAACTCTTAAGACAGGATCAGAAGAACTTAAATCATTATTTAATACAT +TAGCAACCCTTTGGTGTGTACATCAAAGGATAGACATAAGAGACACCAAGGAAGCTTTAG +ATAAAGTAGAAGAAATGCAAAAGAAGAGCAAACAAAAGACACAGCAGGCAGCCGCTGCCG +CAGGAAGCAGCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGACAAATGGTCCATC +AGCCCATGTCACCTAGGACTTTAAACGCATGGGTAAAGGTAATAGAAGAAAAGGGTTTCA +GCCCAGAAGTAATACCCATGTTTACAGCATTATCAGAGGGAGCCACCCCACAAGATTTAA +ATATGATGCTAAACATAGTGGGGGGACACCAGGCAGCAATGCAGATGTTAAAAGATACCA +TCAATGAGGAAGCTGCAGAATGGGACAGGACACATCCAGTACAAGCAGGGCCTATTCCAC +CAGGCCAGCTGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAAG +AACAAATAGGATGGATGACAGGCAATCCACCTATCCCAGTGGGAGAAATCTATAAAAGAT +GGATAGTTCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACA +TAAGACAAGGACCAAAAGAACCCTTTAGAGATTATGTAGATAGGTTCTTTAAAACTTTGA +GAGCTGAACAAGCTACGCAGGAGGTAAAAAACTGGATGACAGAAACCCTGCTGGTCCAAA +ATGCGAATCCAGACTGTAAGAACATTTTAAGAGCATTGGGACAAGGGGCTACATTAGAAG +AAATGATGACAGCATGTCAGGGAGTAGGAGGACCTGGCCATAAAGCAAAAGTTTTGGCTG +AGGCAATGAGTCAAGTACAACAGACCAACATAATGATGCAGAGAGGCAATTTTAGGGGCC +AGAGAACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAAGG +CCCCTAGGAAAAGGGGTTGTTGGAAATGTGGGAAGGAAGGACACCAAATGAAAGACTGCA +CTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGGCCAGGAA +ATTTTCCTCAGAACAGACTGGAACCAACAGCCCCACCAGCAGAGAGTGTTGGGATGAGGG +AAGAGGCAACCTCCTCTCAGAAGCCGGAACCAGGGGACAAGGATCTTTACCCTCCTTTAA +CCTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAACATAGGGGGACAGCT +AATAGAAGCTCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAGTTTACC +AGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGGGGTTTTATCAAAGTAAGACAGTA +TGATCAGATAAGTATAGAAATTTGTGGAAAAAAGGCCATAGGTACAGTATTAGTAGGACC +TACACCTGTCAACATAATTGGACGAAATATGTTGACTCAGATTGGTTGTACTTTAAATTT +TCCAATTAGTCCTATTGAAACTGTGCCAGTAAGATTAAAGCCAGGAATGGATGGCCCAAA +GGTCAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGACATTTGTACAGA +GATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGT +ATTTGCCATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACT +CAATAAGAGAACTCAAGACTTCTGGGAGGTCCAATTAGGAATACCTCATCCCGCGGGATT +AAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCCCT +AGATCCAGATTTCAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACC +AGGAATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAGGGATCACCAGCAATATT +TCAAGCAAGCATGACAAAAATCTTAGAACCCTTTAGAGCAAAAAATCCAGAGGTGGTGGT +CTACCAATATATGGATGATTTATATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGC +AAAAATAGAGGAGTTAAGAGAACATCTACTGAGATGGGGACTTACTACACCAGACAAAAA +ACATCAGAAAGAACCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGAC +AGTTCAGCCCATACAGCTGCCAGACAAGGAAAGCTGGACTGTCAATGATATACAGAAATT +AGTGGGAAAACTAAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAGGCAACTGTG +TAAACTCCTCAGGGGAGCCAAAGCCCTAACAGATATAGTACCACTGACTGAGGAAGCAGA +ATTAGAATTGGCAGAAAACAGGGAAATTCTAAAAGAACCTGTACATGGAGTGTACTATGA +CCCAACAAAAGACTTAGTAGCAGAAATACAGAAACAGGGGCAAGACCAATGGACATACCA +AATATATCAAGAGCCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGC +CCACACTAATGATGTAAAACAATTAACAGAGGTAGTGCAAAAGGTGTCTATGGAAAGCAT +AGTAATATGGGGAAAGACACCTAAATTTAGACTGCCCATACAAAAGGAAACATGGGACGC +ATGGTGGATGGAGTATTGGCAGGCTACCTGGATTCCTGATTGGGAGTTTGTCAATACCCC +CCCTCTAGTAAAATTATGGTACCAATTAGAGAAAGAACCCATAGCAGGGGCAGAAACTTT +CTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTCACTGA +TAGGGGAAGACAAAAGGTGGTTCCCCTAACTGAGACCACAAATCAAAAGACTGAATTACA +GGCAATTCATCTAGCCTTGCAGGATGCTGGATCAGAAGTAAATATAGTAACAGACTCACA +GTATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGAATCAGAGTTAGTCAATCA +AATAATAGAGGAGCTAATAAAAAAGGACAGAGTATACCTGTCATGGGTACCAGCACACAA +AGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAGTGGAATCAGGAAAGTACT +ATTTTTAGATGGTATAGATAAAGCCCAAGAAGAGCATGAAAGATATCACAGCAATTGGAG +AGCAATGGCTAGTGATTTTAATCTGCCACCTRTAGTGGCAAAAGAAATAGTGGCCAGCTG +TGATAAATGCCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAAT +ATGGCAGTTAGATTGTACACATCTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGC +CAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAAACAGCATACTT +TATATTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAATACACACAGATAATGGCAGCAA +TTTCACCAGTGCTGCAGTAAAAGCAGCATGTTGGTGGGCAGATGTCACACAAGAATTTGG +AATTCCCTATAACCCCCAAAGTCAAGGAGTAGTGGAGTCTATGAATAAAGAATTAAAGAA +AATCATTGGGCAGGTTAGAGATCAAGCTGAACACCTGAAGACAGCAGTACAGATGGCAGT +ATTCATTCACAATTTTAAAAGAAAAGGGGGGATAGGGGGGTACAGTGCAGGGGAAAGGAT +AATAGACATAATAGCATCAGATATACAAACTAAAGAACTACAAAAACAAATTACACAAAT +TCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAA +ACTACTCTGGAAAGGTGAAGGGGCGGTAGTAATACAAGACAATAACGACATAAAGGTAGT +GCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTG +TGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCATATGT +ATATCTCTAAGAAAACTCAGGGTTGGTTTTATAGACATCACTATGAAAGTAGGCATCCAA +AAGCAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAATAGTAAGAACATATT +GGGGTCTGCATACAGGGGAAAGAGATTGGCACTTGGGTCATGGGGTCTCCATAGAATGGG +AACAGAAAAGGTATAGTACACAAATAGATCCTGACCTAGCAGATCAACTGATTCACCTGC +ATTATTTTGACTGTTTTACAGACTCTGCCATAAGGAAAGCCCTATTAGGACAAGAAGTTA +GACCTAGGTGTGAATATCAAGCAGGGCATAGAAAGGTAGGATCGCTACAATATTTGGCAC +TGAAAGCATTAGTAACACCAACAAGGAGAAAGCCCCCTTTACCGAGTGTTAAGAAGTTAA +CAGAAGACAGATGGAACAAGTCCCAGAAGACCAGGGGCCACAGAGGGAGCCATTCAATGA +ATGGGCATTAGAATTGTTAGAAGAGCTTAAACATGAAGCTGTCAGACACTTTCCTAGGCC +ATGGCTCCATGGACTAGGACAACATATCTATAACACATATGGGGATACTTGGGAAGGGGT +TGGAGCTATAATAAGAATCCTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCA +ACATAGCAGAATAGGCATTATTCGAGGGAGAAGAGGCAGGAATGGAGCTGGTAGATCCTA +GCCTAGAGCCCTGGAACCATCCGGGAAGTCAGCCCACAACTGCTTGTAACAATTGCTACT +GTAAAAAATGCTGCTGGCATTGCCAATTGTGCTTTCTGAACAAGGGCTTAGGCATCTCCT +ATGGCAGGAAGAAGCGGAGACGCCGACGAGGAACTCCTAAGAGCCGTCAGGATCATCAAA +ATCCTGTACCAAAGCAGTGAGTAGTAACAATTAGTATCTGTGATGCAAGTTTTAGGAATA +GCTTCAATAGTAGGGCTAATAGTAGCATCCATAGCAGCCATAGTTGTGTGGACCATAGTA +TTCATAGAGTATAGGAAAATAAGGAAAGAGAGAAAGATAAGTAGGTTACTTGATAGAATA +AGAGAAAGAGCAGAAGATAGTGGCAACGAGAGTGATGGAGACACAGAGGAATTGGCTACT +CTTATGGAGAGGGGGGCTGATAATGTTTTGGATAATGATAATTTGTAATGCTCAACCATT +GTGGGTCACGATCTACTATGGGGTACCTGTGTGGAGAGAAGCAGAGACCACCCTATTTTG +TGCCTCAGATGCTAAGGCATATGTGAAAGAATCACATAATGTCTGGGCTACACATGCCTG +TGTACCCACAGATCCTAACCCACAAGAAATATATTTGAAAAATGTAACAGAAAATTTTAA +TATGTGGAAAAATAACATGGTAGATCAGATGCATGAAGATATAATTAGTCTATGGGACGA +AAGCCTAAAGCCATGTGTAAAATTAACCCCTCTCTGTGTTACTTTAGAGTGTAATAATTT +CAATAGTAGTAATAACAGCACCTCTGCCAACAACAGCATATCTGATGGCATGCAAGAAAT +AAAAAACTGCTCGTTCAATATGACCACAGTACTAAGAGATAAGAGACAGAAAATAGCTGC +GCTTTTTTATAGACAAGATATAGTACCAATGGATGGGAATAGCAGTAGTAGTCAGTATAG +GTTAATAAATTGTAATACCTCAGCAATTACACAGGCTTGTCCAAAGGTATCCTTTGAGCC +AATTCCCATACATTATTGTGCACCAGCTGGTTTTGCGATTCTAAAGTGTAATGATGAGAA +GTTCAATGGAACAGGGCCATGCACGAATGTCAGCACAGTACAATGCACACATGGAATCAA +GCCAGTAGCATCAACTCAGCTGCTGTTAAATGGCAGTCTAGCAGAAAAAGATGTAGTGAT +CAGATCTGAAAATATCTCAAACAATGCCAAAACCATAATAGTACAGTTAAAGAGTCCTGT +AAAAATTAATTGTACCAGACCTAACAACAATACAAGAAAAGGTGTACATATAGGACCAGG +GCAAACATTCTATGCAACAGGTGACATAATAGGAAATATAAGACAAGCACATTGTAATGT +CAGTGGAGGGGACTGGAATACTGCTTTACAACAAGTGGTTGAACAATTAGGGAAGTACTT +CAACAAATCCACAATAGTCTTTAAGAACCACTCAGGAGGGGATTTAGAAATTACAACACA +TAGTTTTAATTGTGGAGGAGAATTTTTCTATTGCAATACAACACCACTGTTTAAGAGCGT +TTGGAATAAAAATGGGAGCACTTGGAACAGCAATACCACTAACAGTACAGAGTCAAATAA +CACTATAACCCTCCAGTGCAAAATAAAGCAAATTATAAATCTGTGGCAGAGAGTAGGACA +AGCAATATATGCCCCCCCCATCCCAGGAGTAATAAGGTGTGAATCAAATATTACAGGACT +ACTATTAACAAGAGATGGGGGAAATATTGATGATGATGCAAATGAGACTTTCAGGCCGGG +AGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAGTAAAAAT +TGAACCACTAGGTGTAGCACCCACCCGTGCAAGAAGAAGAGTGGTGGGGAGAGAAAAAAG +AGCAGTTGGACTAGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGG +CGCAGCGTCAGTAACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACA +GCAAAGCAATTTGCTGAGGGCGATAGAGGCTCAACAACAGTTGTTGAAACTCACGGTCTG +GGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAGGGACCAACA +GCTCCTAGGAATTTGGGGATGCTCTGGAAGACTCATCTGCACCACCAATGTACCTTGGAA +CTATAGTTGGAGTAATAAATCTTATAATGACATATGGGATAACATGACCTGGCTACAATG +GGATAAAGAAATTAGCAATTACACAGCAATAATATATAATCTAATTGAAGAATCGCAGAA +TCAGCAGGAAAAGAATGAACAAGACTTATTGGCATTGGACAAGTGGGCAAGTCTGTGGAA +TTGGTTTGACATAACAAAATGGCTATGGTATATAAGAATATTTATAATGATAGTAGGAGG +TTTAATAGGACTAAGAATAGTTTTTGCTGTACTTGCTTTAATAAATAGAGTTAGGCAGGG +ATACTCACCCTTGTCGTTCCAGACCCTTGCCCGCCACCAGAGGGAACCCGACAGGCCCGA +AGGAATCGAAGAAGGAGGTGGAGAGCAAGACAGAAACAGATCCGTGCGATTAGTGAGCGG +ATTCTTAGCACTTGCCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGATT +GAGAGACTTTCTCTTGATTGCAGCAAGGACTGTGGAACTTCTGGGACACAGCTGTCTCAA +GGGGCTGGGACTGGGGTGGGAAGCCCTCAAATATCTGTGGAATCTTCTATCATACTGGAG +TCAGGAACTAAAGAATAGTGCAGTTAGTTTGCTTAATGCAATAGCAATAGCAGTAGCTAA +CTGGACAGACAGAATTATAGAAATAGGACAAAGAGCTGGTAGATAACATGGGTGGCAAGT +GGTCAAAAAGCAGCATAGTGGAATGGCCTAAGGTTAGGGAAAGAATAAGACAGACCCCTC +CAACAGCAACAGGAGTAGGAGCAGCATCTCAAGATTTAGATAAACATGGAGCAATCACAA +GCAGCAACACAGCAGAAACTAACCCTGATTGTGCCTGGCTAGAAGCACAAGAGGACGAGG +AGGTAGGCTTTCCAGTTAAGCCACAGGTACCTTTGAGACCAATGACTTATAAGGCAGCCT +TCGATCTCAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATATACTCCAAGA +AAAGACAAGAGATCCTTGATCTATGGGTCTATAACACACAAGGATTCTTCCCAGATTGGC +AGAACTACACCCCAGGGCCAGGGACTAGATTCCCACTGACCTTTGGGTGGTGCTTCAAAC +TAGTACCAATGGATCCAGCAGATATAGAGGAAGCCAATAAAGGAGAGAACAACAGTTTAT +TACACCCCATCTGCCAGCATGGAATGGAGGACGAAGAAAGAGAAGTGCTGGTCTGGAGAT +TTGACAGCAGCCTAGCACGGAGACACATAGCCCGAGAACTGCACCCAGAGTACTACAAGG +ACTGCTGACACAGGAGTTGCTGACACAGAAGTTGCTGACACAGTTGTTGCTGACAAGGGA +CTTTTCCGCCTGGGACTTTCCGGGGAGGCGCGGCATGGGAGGGACTGGGGAGTGGCTTGC +CCTCAGAAGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGGGTCTCTCTTGTTAGACC +AGATTTGAGCCTGGGAGCTCTCTGGCTAGCAAGGGAACCCACTGCTT +>CRF02_AG.ES.1999.0.R74_s_nt0545_9481.MF157740 MF157740 +TGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGAC +CACTCTAGACTGTGTAAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCGGAAGTTAATA +GGGACTCGAAAGCGAAAGTTCCAGAGAAGCTCTCTCGACGCACGGACTCGGCTTGCTGAG +GTGCACACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAAATTTTGACTAGCGGA +GGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCGGTATTAAGTGGGGGAAAATTAGATGC +ATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAGT +ATGGGCAAGCAGGGAGCTGGAAAGATTTGCACTAAACCCTGGCCTTTTAGAATCAGCAGA +AGGATGTCAACAACTAATGGAACAGTTACAGTCAGCTCTCGGGACAGGATCAGAAGAACT +TAAATCATTATTTAATACACTAGCAGTCCTTTGGTGTGTACATCAAAGGGTAGACATAAA +AGACACCAAGGAAGCCTTAGATAAGATAAAGGAAGTACAGAATAAGAGCAAGCAAAAGCC +ACAGCAGGCAGCAGCTGCCGCAGGAAGCAGCAGCCAAAATTACCCTATAGTGCAAAATGC +ACAAGGGCAAATGGTACATCAGTCCATGTCGCCTAGGACTTTAAATGCATGGGTAAAGGT +AATAGAAGAAAAGGGTTTCAGTCCAGAAGTAATACCCATGTTTTCAGCATTATCGGAGGG +AGCCGCCCCGCAAGATTTAAATATGATGCTAAACATAGTGGGGGGACACCAGGCAGCAAT +GCAGATGTTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGGTACATCCAGT +ACATGCAGGGCCTGCCCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGG +AACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAGCAATCCACCTATCCCAGT +GGGAGAAATCTATAAAAGATGGATAGTCCTGGGATTAAATAAAATAGTAAGAATGTATAG +CCCTGTCAGCATCTTGGACATAAGACAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGA +TAGGTTCTTTAAAACTTTAAGAGCTGAACAAGCTACACAGGAGGTAAAAGGCTGGATGAC +AGAAACCTTGCTGGTCCAAAATGCGAATCCAGACTGTAAGACCATTTTAAGAGCATTAGG +ACCAGGGGCTTCATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCA +TAAAGCAAGGGTTTTGGCTGAGGCAATGAGTCAAGCACAACAGGCCAACATAATGATGCA +GAGAGGTAATTTTAGGGGCCAGAGAACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACA +CCTAGCCAGAAATTGCAAGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGGAAGGAAGG +ACACCAAATGAAAGACTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTC +CAGCAAGGGGAGGCCAGGAAATTTTCCCCAGAGCAGACCGGAACCAACAGCCCCACCAGC +AGAGAGCGTTGGGATGGGGGAAGAGATAACCTCCTCTCCGCAGCAGGAACCGAGGGACAA +GGGGCTATATCCTCCTTTAACTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACA +GTAAGAATAGAGGGACAACTAATAGAAGCCCTATTAGACACAGGAGCAAATGATACAGTA +TTAGAAGACATAAATTTACCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGT +TTTATTAAAGTAAGACAATATGATCAGGTACTTATAGAAATTTGTGGAAAAAAGGCCATA +GGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGACGAAATATGTTGACTCAG +ATTGGTTGTACTTTAAATTTTCCAATTAGTCCTATTGAAACTGTGCCAGTAAAATTAAAG +CCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTGACAGAAAAAAAAATAAAAGCA +TTAACAGAAATTTGTGCAAAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGACCTGAA +AATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATAGTACTAAATGGAGAAAA +TTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTCTGGGAGGTCCAATTAGGA +ATTCCTCATCCCGCGGGATTAAAGAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGAT +GCATATTTTTCAGTTCCTTTAGATAAAGACTTTAGGAAGTATACTGCATTCACTATACCT +AGTGTAAATAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGG +AAAGGATCACCAGCAATATTTCAGGCAAGCATGACAAAAATCTTAGAGCCCTATAGGACA +AAAAATCCAGAGATGGTGATCTACCAATATATGGATGATTTATATGTAGGATCTGACTTA +AAAATAGGGCAGCATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTGAGATGGGGG +CTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGATATGAA +CTCCATCCTGACAAATGGACAGTCCAGACTATACAGCTGCCAGACAAAGACAGCTGGACT +GTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAGATTTATCCAGGA +ATTAAAGTAAAGCAACTGTGTAAACTCCTCAGGGGAGCCAAAGCGCTAACAGATATAGTA +ACACTAACTGAGGAAGCAGAATTAGAATTGGCAGAGAACAGAGAAATTTTAAAAGAACCT +GTACATGGAGTATATTATGACCCAACAAAGGACTTAGTAGCAGAAATACAGAAGCAGGGG +CAAGACCAATGGACATATCAAATATATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAA +TATGCAAAAAAGAGGTCTGCCCACACTAATGATGTAAAACAATTAACAGAGGTAGTGCAA +AAAGTGACTACAGAAAGCATAATAATATGGGGAAAGACCCCTAAATTTAGACTACCCATA +CAAAAAGAAACATGGGAAGCATGGTGGATGGAGTATTGGCAAGCCACCTGGATTCCTGAA +TGGGAGTTTGTCAATACCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCC +ATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGGAAACTAAGCTAGGA +AAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACA +AATCAAAAGACTGAATTACATGCAATTCATTTAGCCTTGCAGGATTCGGGATCAGAAGTA +AATATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGT +GAATCAGAGTTAGTCAATCAAATAATAGAGAAGCTAATACAGAAGGACAAAATATACCTG +TCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGT +AATGGAATCAGGAAGGTACTATTTTTAGATGGCATAGATAAAGCTCAAGAGGAGCATGAA +AGATATCACAGCAATTGGAGAGCAATGGCTAGTGATTTTAATCTGCCACCTATAGTAGCA +AAAGAAATAGTGGCCAGCTGTGACAAATGCCAGCTAAAAGGGGAAGCCATGCATGGACAA +GTAGACTGTGGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAGGGGAAAATTATC +TTAGTAGCAGTCCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATCCCAGCAGAAACA +GGACAGGAGACAGCATACTTTATATTAAAATTAGCAGGAAGATGGCCAGTAAAAATAATA +CACACAGACAATGGCAGCAATTTCACCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCA +AATGTCACACAAGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCT +ATGAATAAAGAATTAAAGAAAATTATAGGGCAGGTCAGGGATCAAGCTGAACACCTTAAG +ACAGCAGTACAGATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGG +TACAGTGCAGGGGAGAGAATAATAGATATAATAGCATCAGATATACAAACTAAAGAACTA +CAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCC +ATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGAT +AATAGTGAAATAAAGGTAGTACCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAA +CAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAG +TTTAGTAAAACATCATATGTATATCTCTAAGAAAGCTAGGAATTGGGTTTATAGACATCA +CTATGAAAGTAGGAATCCAAGAGTAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAA +ATTAGTAGTAAGAACATATTGGGGTCTGCATACAGGAAAAAGAGACTGGCACTTGGGTCA +TGGGGTCTCCATAGAATGGAAGCAGAAAAGATATAGTACACAAATAGATCCTGACCTAGC +AAACCAACTGATTCACCTACATTATTTTGACTGTTTTTCAAAATCCGCCATAAGGAAAGC +CATAATAGGAGAAATAGTTAGACCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGG +ATCACTACAATATTTGGCACTGAAAGCAATAGTAACACCAACAAAGACAAAGCCACCTTT +ACCTAGTGTTAGGAAGTTAGCAGAAGACAGATGGAAAGAGCCCCAGAAGACCAGGGGCCA +CAGAGGGAGCCGTTCAATGAATGGATGCTAGAACTGTTAGAAGAGCTTAAACATGAAGCT +GTTAGGCACTTTCCTAGGCCGTGGCTCCATGGGCTAGGACAACATATCTATGAAACATAT +GGGGATACTTGGGAAGGGGTTCAAGCTATAATAAGAATTTTGCAACAACTACTGTTTGTT +CATTTCAGAATTGGGTGTCAACATAGCAGGATAGGCATTATTCGAGGGAGAAGAGGCAGG +AATGGAGCTGGTAGATCCTAGCCTAGAGCCCTGGAACCACCCGGGAAGCCAGCCTACAAC +TGCTTGTAGCAAATGTTATTGTAAAATGTGCTGCTGGCATTGCCAATTGTGCTTTTTGAA +CAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGTGGAGACGCCGACGAGGAGCTTCTCA +GAGCCATCAGGTTCATCAAGATCCTGTACCAAAGCAGTAAGTAATAACAATTAGTATATG +TGATGCTACCTTTACATATAGCTGCAATAGTAGGACTAGTAGTAGCATTCATAGCAGCCA +TAGTTGTGTGGACCATAGTATATATAGAATATAGGGAAATAAGGAAACAGAAGAAAATAG +ACAGGTTACTTGAGAGAATAAGAGAAAGAGCAGAAGATAGTGGCAATGAGAGTGACGGGG +ATACAGAAGAATTATCCACTCTTTTGGAGATGGGGTATGATRATATTTTGGACAATGATA +ATTTGTAATGGTGAGCAGATGTGGGTCACGGTCTATTATGGGGTACCTGTGTGGAAAGAC +GCAAAGACCACCCTATTTTGTGCATCAAATGCGCAAGCATATAACCCAGAAGTACATAAT +GTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAACCCACAGAAAATACCTTTGGAA +AATGTAACAGAAAAATTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAAGAT +ATAATTAGTCTATGGGACCAAAGCCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGCGTT +ACTTTAAATTGTCGTAACCTCGACAACAAAACTAGCAACGCCAATAGTAGCAACAGCAAC +GATTTCAACAGAACCATATCTATTGACATGAAAGAGGAAATACAAAACTGCTCTTTCAAT +ATGACCACAGAATTAAGAGATAAGGAAAAGAAAATGTATGCACTTTTTTATAGACTTGAT +ATAGTACAAATTGAAAATAGCAGTAGTCTTGAAAATGGCAGTAGTCCGTATAGGTTAATA +AATTGTAATACCTCAGCCATTACACAGGCTTGTCCAAAGATAACCTTTGAGCCAATTCCC +ATACATTATTGTGCCCCAGCTGGTTTTGCAATTTTAAAGTGTAATGATAAGAAGTTCAAT +GGAACAGGGCCCTGCATGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGTA +GTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAAAGGTAGCAATTAGATCT +GAAAATATCACAAACAATGCCAAAACCATAATAGTACAGTTGATTACGCCTGTAAAAATT +AACTGTACCAGACCTGGCAACAATACAAGAAGAAGGGTGCGTATAGGACCAGGGCAAGCA +TTCCATGCATCAGATGATATAATAGGAGATATAAGAAAAGCACATTGTAATGTCAGTGAA +AAAGATTGGAATAACACTTTACACCAGGTAGCTAATCAATTAGGGGAGCACTTTAAGAAT +GCAAAAACAATAAAATTTGCTAGCTCCTCAGGAGGGGACGTAGAAATTACAACACATAGT +TTTAATTGTGGAGGAGAATTTTTCTATTGCAGTACATCAGAACTGTTTAATAGCACTTGG +AAACGGGTTAATAACACTACTACTTGGAATAGCACTGCCAACTCAACAAATGACCCTATA +ACTCTCCGGTGTAGAATAAAGCAAATTGTAAGGATGTGGCAGAGAGTAGAACAAGCAATG +TATGCCCCTCCCATCCGAGGAGAAATAAGGTGTGAGTCAAACATTACAGGATTACTATTA +ACAAGAGATGGAGGGCATGATGATGGGACAGATGAGACAGAGGAGACCTTCAGGCCTGGA +GGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAGTAAAAATT +GAACCACTAGGTGTAGCACCCACCCATGCAAAAAGAAGAGTGGTGGAGAGAGAAAAAAGA +GCAGTTGGACTGGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGC +GCGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAG +CAGAGCAATTTGCTGAGAGCTATAGAGGCTCAACAACATCTGTTGAGACTCACGGTCTGG +GGCATTAAACAGCTCCGGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAGTGATCAACAG +CTCCTAGGACTTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCCTGGAAC +TCTAGTTGGAGTAACAAAACTTATAATGACATATGGAATAACATGACCTGGCTGCAATGG +GATAGAGAAATTGACAATTACACAAACATAATATATAATCTAATTGAGGAATCGCAAAAC +CAGCAGGAAAAGAATGAACAAGACTTGTTGGCATTGGACACGTGGGCAAGCCTGTGGAAT +TGGTTTAAAATAACAAACTGGCTATGGTATATAAAAATGTTTATAATGATAGTAGGAGGT +TTAATAGGTTTAAGAATAGTTTTTGCTGTACTTACCATAATAAATAGAGTTAGGCAGGGA +TACTCACCTTTGTCGTTCCAGACCCTTACCCACCACCAGCGGGGACCCGACAGGCCCGAA +AGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAGACAGATCAGTGCGCTTAGTGAGCGGA +TTCTTAGCACTTGCCTGGGACGATCTGCGGAACCTGTGCCTCTTCAGCTACCACCGATTG +AGAGACTTAGTCTTGATTCTGGGACACAGCAGTCTCAAGGGACTGAGACTGGGGTGGGGA +GCCCTCAAATATCTGTGGAATCTTCTATCATACTGGGGTCAGGAACTAAAGAATAGTGCT +ATTAGTTTGCTTGATACAATAGCAATAGCAGTAGCTAACTGGACAGACAGGATTATAGAA +ATAGGACAGAGAGTTGGTAGAGCTATTTGCAACATACCTAGAAGAATCAGACAGGGCTTA +GAAAGGGCTTTGCTATAACATGGGTGGCAAGTGGTCAAAAAGCAGCATAGTGGGATGGCC +TCAGGTTAGGGAAAGGATAAGACAAACCCCTCCAGCGCCAGCAGCAGAAGGAGTAGGAGC +GGCATCTCAAGACTTAGATAAATATGGAGCAATTACAAACAGTAATACAACACAGAATAA +TCCTGATTGTGCCTGGCTGGAAGCACAAGAAGACGAGGAGGTAGGCTTCCCAGTCAGACC +ACAGGTACCTTTGAGACCAATGACTACCAGGGCAGCTCGAGATCTCAGCCACTTTTTAAA +AGAAAAGGGGGGACTGGATGGGTTAATTCACTCCAAGAAAAGACAAGAGATCCTTGATCT +GTGGGTCTATCACACACAAGGATTCTTCCCAGATTGGCAGAACTACACTCCAGGGCCAGG +GACTAGATACCCACTTTGCTTCGGGTGGTGCTTCAAACTAGTACCAATGGATCCAGCAGA +GGTAGAGAAAGCCAATGAAGAAGAGAACAACAGTTTATTACACCCCATCTGTCAGCATGG +AATGGAAGACGAAGACAGAGAAGTACTGGTCTGGAGGTTTGACTGTAACCTGGCATTTAG +ACACGTAGCTAAAGAGCTGCATCCGGAGTACTACAAAGACTGCTGACACAGAAGTTGCTG +ACAGGGACTTTCCACTGGGGACTTTCCGGGGAGGCGTGGTGTGGGAGGAG +>CRF02_AG.CM.2001.0.01CM_0131NY.AY371137 AY371137 +GCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGGCTAAGG +CCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAA +AGATTCGCACTTAATCCTGGTCTTTTAGAAACAGCAGAAGGATGTCAACAAATAATGGAG +CAGTTACAATCAACTCTCAGGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTA +GCAGTCCTGTATTGTGTACATCAAAGGTTAGATATAAAAGACACCAAGGAAGCCTTAGAT +AAAATAGAGGAAATGCAAAATAAGAGCAAACAAAAGGCACAGCAGGCAGCAGCTGGCACA +GGCTGCAGCCAAAATTACCCTATAGTGCAGAATGCACAAGGGCAAATGACACATCAGAAT +ATGTCACCTAGGACTTTAAATGCATGGGTGAAGGTAATAGAAGAAAAGGCTTTCAGCCCA +GAAGTAATACCCATGTTTTCAGCCTTATCAGAGGGAGCCACCCCACAAGATTTAAATATG +ATGCTAAACATAGTGGGGGGGCACCAGGCAGCAATGCAAATATTAAAAGATACCATCAAT +GAGGAAGCTGCAGACTGGGACAGGACACATCCAGTACCTGCAGGGCCTATTGCACCAGGC +CAGATAAGAGACCCAAGGGGAAGTGATATAGCAGGAACTACTAGTAACCTTGAAGAACAA +GTAAGATGGATGACAAGCAATCCACCTATCCCAGTGGGAGACATCTATAAAAGATGGATA +ATCCTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGA +CAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGATAGATTCTTTAAAACTTTGAGAGCT +GAACAAGCTACGCAGGAGGTAAAACACTGGATGACAGAAACCTTGCTGGTCCAAAATGCG +AATCCAGACTGTAAGTCTATTTTGAAGGCATTAGGAACAGGGGCTACATTAGAAGAAATG +ATGACAGCATGCCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGGGTTCTGGCTGAGGCA +ATGAGTCAAGTACAACAGACAAACATAATGATGCAGAGAGGCAATTTTAGGGGACAGAAA +ACAATAAAGTGTTTCAATTGTGGTAAAGAAGGGCACCTAGCCAGAAATTGCAAGGCCCCT +AGAAAAAAGGGCTGTTGGAAATGTGGGAAGGAAGGACACCAAATAAAAGACTGCACTGAG +AGACAGGCGAATTTTTTAGGGAGAATTTGGCCTTCCAAGGGGAGGCCAGGAAATTTTCCT +CAGAGCAGACCGGAACCAACAGCCCCACCAGCAGAGATCTTTGGGATGGGGGAAGAGACA +CCCTCCTCTCCGAAGCAGGAACCGAAGGACGAGGGAATATACCCTCCCTTAACTTCCCTC +AAATCACTCTTTGGCAACGACCCTTAGTTACAGTAAAAATAGGGGGACAGCTAATAGAAG +CCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAGTTTACCAGGAAAAT +GGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGATCAGA +TACTCATGGAAATTTATGGGAAAAAGGCTATAGGTACAGTGCTAGTAGGACCTACACCTG +TCAACATAATTGGACGAAATATGTTGACTCAGATTGGCTGTACTTTAAATTTTCCAATTA +GCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAAC +AATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTGCAGAAATGGAAA +AGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCA +TAAAGAAAAAAGATAGTACTAAATGGAGGAAATTAGTAGATTTCAGAGAACTCAATAAAA +GAACTCAAGACTTCTGGGAGGTCCAACTAGGGATACCTCATCCCGCGGGATTAAAAAAGA +AAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATGAGG +GCTTTAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACCGGGAATTA +GATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAAGCTA +GCATAACAAAAATCTTAGAGCCCTTTAGAATGAAAAATCCAGAGATAATAATTTACCAAT +ATATGGATGATTTATATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGCAAAAGTAG +AGGAGTTAAGAGAACATCTACTGAAATGGGGATTTACCACACCAGACAAAAAACATCAGA +AAGAGCCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAGC +CTATACAGCTGCCAGACAAAGACAGCTGGACTGTCAATGATATACAGAAGTTAGTGGGAA +AACTAAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAAACAACTGTGTAAACTCC +TCAGGGGAGCCAGAGCACTAACAGATATAGTAACACTGACTGAGGAAGCAGAATTAGAAT +TGGCAGAAAACAGGGAAATTCTAAAAGAACCTGTACATGGAGTCTATTATGACCCAGCAA +AAGACCTAATAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTTATC +AAGAGCCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGCTCACACTA +ATGATGTAAAACAATTAACAGAGGTAGTGCAAAAGGTGGCTACAGAAAGCATAGTAATAT +GGGGAAAGACCCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAGCCTGGTGGC +TGGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTCTAG +TAAAATTATGGTACCAATTAGAGAAAGAACCAATATTAGGGGCAGAAACTTTCTATGTAG +ATGGGGCAGCTAATAGGGAGACTAAGCTAGGGAAAGCAGGGTATGTCACTGACAGAGGAA +GACAAAAGGTTGTTTCCCTAAATGAGACAACAAATCAAAAGACTGAATTACATGCAATCC +ATCTAGCCTTGCAGGATTCAGGAACAGAAGTAAATATAGTAACAGACTCACAGTATGCAT +TAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGAGTTAGTTAATCAAATAATAG +AGAAGCTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGAATTG +GAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAGAGTACTGTTTTTAG +ATGGCATAGATAAAGCTCAAGAAGAGCATGAAAAATATCACAGTAATTGGAGAGCAATGG +CTAGTGATTTTAATCTGCCACCTATAGTAGCAAAAGAAATAGTGGCCAGCTGTGATAAAT +GCCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAAT +TAGATTGTACACATTTAGAAGGAAAAATTATCATAGTAGCAGTCCATGTAGCCAGTGGCT +ATATAGAGGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTTATATTAA +AATTAGCAGGAAGATGGCCAGTGAAAATAATACACACAGACAACGGCAGCAATTTCACCA +GTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAAATGTCACACAAGAATTTGGAATTCCCT +ACAATCCCCAAAGCCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAAATTATAG +GGCAGGTCAGGGATCAAGCTGAACACCTTAAGACAGCAGTACAGATGGCAGTGTTCATTC +ACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACA +TAATAGCATCAGATATACAAACTAAAGAACTACAAAAACAAATTATAAAAATTCAAAATT +TTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAAGCTACTCT +GGAAAGGTGAAGGGGCAGTAGTAATACAGGATAATAGTGATATAAAGGTAGTACCAAGAA +GAAAAGTAAAAATCATTAAAGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAA +GTAGACAGGATGAGAATTAGAACATGGAACAGTTTAGTAAAGCATCATATGTATGTTTCT +AAGAAAGCTAGAAATTGGTTTTATAGACACCACTATGAAAGCCGACATCCAAAAGTAAGT +TCAGAAGTACACATTCCACTAGGGGATGCTATATTGGTAATAAAAACATATTGGGGACTG +CATACAGGGGAAAGAGAGTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAGAGA +AGATACAGCACACAAGTAGATCCTGACCTAGCAGACCAACTGATTCACCTGCATTATTTT +GACTGTTTTTCAGAATCTGCCATAAGAAAAGCCATATTAGGACAAGTAGTTAGACCTAGG +TGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTACAATATTTGGCACTGAAAGCA +TTAGTAACACCAACAAGGACAAGACCACCTTTGCCTAGTGTTAAGAAATTAACAGAAGAC +AGATGGAACAAGCCCCAGAGGACCAGGGGCCGCAGAGGGAGCCGTCCAATGAATGGACAT +TAGAACTGTTAGAAGAGCTTAAACATGAAGCAGTTAGACATTTTCCTAGGCCATGGCTCC +ATGGATTAGGACAACATATCTATGAAACATATGGGGATACTTGGGAAGGGGTTGGAGCTA +TAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGCCAACATAGCA +GAATAGGCATTATTCCAGGGAGAGGAGGCAGAAATGGAGCTAATAGATCCTAGCCTAGAG +CCCTGGAACCACCCGGGAAGTCAGCCTACAACTGCTTGTAACAATTGTTACTGTAAAATA +TGCTGCTGGCATTGCCAATTATGCTTTCTGAACAAGGGCTTAGGCATTTCCTATGGCAGG +AAGAAGCGGAGACGCCGACGAGGAACTTCTCACAGCCGTCAGGATCATCAAAATCCTGTA +CCAAAGCAGTAAGTAGTAATAATTAGTATATGTGATGCAATCCTTAGAAATAGCTACAAT +AGTAGGACTAGTAGTAGCATTCATAGCAGCCATAGTTGTGTGGACCATAGTGTTCATAGA +ATATAAGAAAATAAGAAAACAGAAGAAAATAGACAGGTTACTTGATAGAATAAGGGACAG +AGCAGAAGATAGTGGCAATGAGAGTGATGGGGATACAGAGGAATTATCCACTCTTATGCA +GCTGGGGGATTATGATTTGTTTGTTAATGATAATGTGTAATGCTAACAAAAACTTATGGG +TCACAGTCTACTATGGGGTACCTGTATGGAAAGAAGCAAACACCACCCTATTTTGTGCAT +CAGATGCTAAAGCATATAACAGAGAAGCACATAATGTCTGGGCTACACATGCTTGTGTAC +CCACAGATCCCAACCCACAAGAAATACCTTTGGAAAATGTAACAGAAAAGTTTAATATGT +GGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATTAGTCTATGGGACCAAAGTC +TAAAGCCATGTGTACAGCTAACCCCTCTCTGCGTGACTCTACATTGTTCTGACAACGTCA +CTAACATCACTAACGTGTCTGAGAACATGAAAGGGGAAATAAAAAACTGCTCTTTCAATA +TGACCACAGAATTAAGAGATAAGCAAAGGAAAATGTATTCACTTTTTTATAGACTTGATG +TAGTACCAATTAATGGAGATAATGATAGTAGTCAGTATAGACTAATAAACTGTAATACCT +CAGCCATTACACAGGCTTGTCCAAAAGTATCCTTTGAGCCAATTCCCATACATTTTTGTG +CCCCAGCTGGTTTTGCGATTCTGAAGTGTAAGGATAAGAAGTTCAAGGGAACAGGGTCAT +GCCAGAATGTCAGCACAGTACAATGCACACATGGAATCAAACCAGTAGTATCAACTCAAC +TGTTACTAAATGGCAGTCTAGCAGAAGGAGAGGTAGTGATTAGATCTGAAAATATCACAA +ACAATGCCAAAATCATAATAGTACAGTTGGCTAGTCCTGTAAAAATTAATTGTACCAGAC +CTAGCAACAATACAAGAAAAAGTATACATATAGGACCAGGACGAGCATTCTATGCAACAC +ATGACATAACAGGGAATATAAGACAAGCACATTGTAATGTCAGTGAAGCAAAATGGAAGG +AAGCTTTACAACAGGTAGCTACACAATTAAGAAAGTTCTTTAAGAATAACACATCAATAA +AATTTGCTAAATCCTCAGGAGGGGATGTAGAAATTACAACACATAGTTTTAATTGTGGAG +GAGAATTTTTCTATTGCAATACATCACAACTGTTTAATAGTACTTGGAATAGTACTTATA +GCAATAATGCCAACTTAACAAATGGCACTATAACTCTCCAATGCAGAATAAAGCAAATTG +TACAGATGTGGCAGAGAGTAGGACAAGCAATGTATGCCCCTCCCATCCAAGGAGTAATAA +GGTGTGAGTCAAACATAACAGGATTACTATTAACAAGAGATGGAGGGACAAATAATACAA +ATAATACCGAGACATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAAT +TATATAAGTATAAGGTAGTACAAATTGAACCAGTGGGTGTGGCACCCACCCATGCAAAAA +GAAGAGTGGTGGAGAGAGAAAAAAGAGCAGTTGGACTGGGAGTTGCGTTCCTTGGGTTCT +TAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGAC +AATTATTGTCTGGTATAGTGCAACAGCAGAGCAATTTGCTGAAGGCTATAGAGGCTCAAC +AACATATGTTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTC +TGGAAAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCA +TCTGCACCACTACGGTGCCCTGGAACTCTAGTTGGAGTAATAAAACTTATGAGGAAATAT +GGGACAACATGACCTGGATGCAATGGGATAGAGAAATTAATAATTACACAGGGATAATAT +ATAATCTAATTGAACAATCACAGAACCAGCAGGAAAAGAATGAACAAGATTTATTGGCAT +TGGACAAGTGGGAAGGCCTGTGGAATTGGTTTAACATAACAAAATGGCTATGGTATATAA +AAATATTTATAATGATAGTAGGAGGTTTAATAGGCTTAAGAATAGTTTTTGCTGTGCTTA +ATGTAATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGACCCTTACCCACC +ACCAGAGGGAACCCGACAGGCCCGAAAGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAG +ACAGATCCGTGAGATTAGTCAGCGGGTTCTTAGCACTTGCCTGGGACGACCTGCGGAACC +TGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTAGCCTTGATTGCTGCGAGGGGTGTGG +AACTTCTGGGACACAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAAGCCCTCAAATATC +TGGGGAATCTTCTGGCATATTGGGGTCGGGAACTAAAGAATAGTGCTATTAATTTGCTTG +ATACAACAGCAATAGCAGTAGCTAACTGGACAGATAGAGTTATCGAAATAGCACAAAGAG +CTGGTAGAGCTATTATTAACATACCTACAAGAATCAGACAGGGCTTCGAAAGGGCTTTGC +TATAACATGGGTGGCAAGTGGTCAAAAAGTAGCCTAGTGGGATGGCCTCAGATTAGAGAA +CGAATGAGACAAACTCCTCCAACTCCTCCTCCAGCAGCAAAAGGGGTAGGAGCAGTATCT +CAAGATTTAGATAAACATGGAGCAATCACAAGCAGTAATACAGCAGCCACTAATGCTAGT +TGTGCCTGGCTGGAAGCACAAGAGGACGAGGAAGTAGGCTTTCCAGTCAGGCCTCAGGTA +CCGTTGAGACCAATGACTTATAAAGGAGCTGTGGATCTCAGCCACTTTTTAAAAGAAAAG +GGGGGACTGGATGGGTTAGTTTATTCTCAGAGAAGACAAGAGATCCTTGATCTGTGGGTC +TATCACACACAAGGATACTTCCCAGACTGGCAGAACTACACACCAGGACCAG +>CRF02_AG.GH.2003.0.GHNJ188.AB231896 AB231896 +TGGATGGGCTAATTTACGCCAAGAAAAGACAGGAGATCCTTGATCTATGGGTTTATCACA +CACAAGGATTCTTCCCAGATTGGCAGAACTACACACCAGGGCCAGGGGTTAGATACCCAC +TGACCTTCGGGTGGTGCTTCAAACTAGTACCAGTGGATCCAACAGAGGTAGAGGAAGCCA +ATGAAGGAGAGAACAACAGTTTATTACATCCCATCAGTCAGCATGGAATGGAGGACGAAG +ACAGAGAGACGCTGGTCTGGAGATTTGACAGCCACTTGGCCTTGAAACACAGAGCTCTAG +AGATGCATCCGGAGTTTTACAAAGACTGCTGACACAGAAGTTGCTGACACAGGAGTTGCT +GACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGTGTGGTTGGGGAGGAGTTTGGGAG +TGGCTAACCCTCAGATGCTGCATATAAGCAGCTGCTTCTCGCTTGTACTGGGTCTCTCTT +GCTAGACCAGATTTGAGCCTGGGAGCTCTCTGACTAGCAGGGGAACCCACTGCTTAAGCC +TCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGG +TAACTAGAGATCCCTCAGACTACTTTAGTCAGTGTAAAAATCTCTAGCAGTGGCGCCCGA +ACAGGGACCGGAAGTTAATAGGGACTCGAAAGCGAAAGTTCCAGAGAAGATCTCTCGACG +CACGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTAC +GCCAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTG +AGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAGG +TATAGGCTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCACTTAACCCT +GGCCTTTTAGAAACAGCAGAAGGATGTCAGCAAGCAATAGAACAGTTACAACCAGCTCTC +GGGACAGGAACAGAAGAACTCAAATCATTATTTAATACCATAGCAACCCTTTGGTGTGTA +CATAAAAGGATAGAGGTAAAAGACACCAAGGAAGCCTTAGATAAAATTGAGGAAGTACAA +AATAAGAGCAATAAGAGCAAGCAACAGACACAGCAGGCAGCAGCTGCAGCCGCCACAGGA +AGCAGCAGCCAAAATTTCCCTATAGTGCAAAATGCACAAGGGCAAATGACACATCAGTCC +ATGTCACCTAGGACTTTGAATGCATGGGTAAAGGTAATAGAAGAAAAGGCTTTCAGTCCA +GAAGTAATACCCATGTTTTCAGCATTATCAGAGGGAGCCACCCCACAAGATTTAAATATG +ATGCTAAACATAGTGGGGGGACACCAGGCAGCAATGCAGATGTTAAAAGATACCATCAAT +GAGGAAGCTGCAGAATGGGACAGGACACATCCAGTACATGCAGGGCCTATTCCACCAGGC +CAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAGCAA +GTAGGATGGATGACAAGCAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATA +GTCCTGGGATTAAATAAGATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGA +CAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGATAGGTTCTTTAAAACTTTGAGAGCT +GAACAAGCTACACAGGATGTAAAGAACTGGATGACAGAAACCTTGCTGGTCCAAAATGCG +AATCCAGACTGTAAGTCCATTTTAAGAGCAATGGGACCAGGGGCTACATTAGAAGAAATG +ATGACAGCATGTCAGGGAGTGGGAGGACCTAGCCATAAAGCAAGGGTCTTGGCTGAGGCA +ATGAGTCAAGCACAACAGGCCAACATAATGATGCAGAGAGGCAATTTTAGGGGCCAGAGA +ACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAAGGCACCT +AGGAAAAGAGGCTGTTGGAAATGTGGGAAGGAAGGACACCAAATGAAAGACTGCACTGAG +AGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGGAGGCCAGGAAATTTT +CCTCAAAGCAGGCCGGAACCAACAGCCCCTCCAGCAGAGAGCCTCGGGATGGGGGAAGAG +ATAACCTCCCCTCAGAAGCAGGAACCGAGGGACAAGGGATTATATCCTCCTTTAACTTCC +CTCAAATCACTCTTTGGCAACGACCCCTAGTCACAGTAAGAATAGGGGGACAGCCAATAG +AAGCCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTACCAGGAA +AATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGATC +AGATACTTATAGAAATTTGTGGAAAAAGGGCCATAGGTACAGTACTAGTAGGACCTACAC +CTGTCAACATAATTGGACGAAATATATTGACTCAGATTGGTTGTACTTTAAATTTTCCAA +TAAGTCCTATTGAAACTGTGCCAGTAAAATTAAAGCCAGGAATGGATGGTCCAAAGGTTA +AACAATGGCCTTTGACAGAAGAGAAAATAAAAGCCTTAACAGACATTTGTAATGAAATGG +AAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATATAACACTCCAGTATTTG +CCATAAAGAAAAAAGATAGTACCCAATGGAGAAAATTAGTAGATTTCAGGGAACTCAATA +AAAGAACTCAAGATTTCTGGGAGGTCCAATTAGGAATACCTCATCCCGCGGGGTTAAAAA +AGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTCTCAGTTCCCTTAGATA +AAGACTTTAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACCAGGGA +TTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAGG +CAAGCATGACAAAAATCTTAGAGCCCTTTAGAACAGAAAATCCAGAGATAGTGATTTACC +AATATATGGATGATTTATATGTAGGTTCTGACTTAGAGATAGGGCAACATAGAGCAAAAA +TAGAGGAGTTGAGAGAACATCTCCTGAGATGGGGGTTTACCACACCAGACAAAAAGCATC +AGAAAGAACCTCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTCC +AGCCTATACAGCTGCCAGAAAAAGACAGCTGGGCTGTCAATGATATACAGAAATTAGTGG +GAAAACTAAATTGGGCAAGTCAGATCTATGCAGGAATTAAAGTAAAACAATTGTGTAGAC +TCCTCAGGGGAGCCAAAGCGCTAACAGATATAGTACCACTGACTGAGGAGGCAGAATTAG +AATTGGCAGAGAACAGGGAAATTCTAAAAGAACCTGTACATGGGGTATACTATGACCCAA +CAAAAGACTTAATAGCAGAGATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTT +ACCAAGAGCCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGCCCACA +CTAATGATGTAAAACAGTTAACAGAGGTAGTGCAAAAAGCGGCTACAGAAAGCATAATAA +TATGGGGGAAGACCCCTAAATTTAGACTACCCATACCAAGAGAAACATGGGAAGCATGGT +GGATGGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTC +TAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAATAGGAGCAGAAACTTTCTATG +TAGATGGGGCAGCTAATAGGGAAACGAAGCTAGGAAAAGCAGGGTATGTCACTGACAGAG +GAAGACAAAAAGTTGTTTCCCTAACTGAGACAACAAACCAAAAGACTGAATTACATGCAA +TTCATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAGTATG +CATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGAGTTAGTCAATCAAATAA +TAGAGAAGCTAATAGGAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGGA +TTGGAGGAAATGAACAAGTGGATAAATTAGTCAGCAATGGAATCAGGAGAGTCCTATTTT +TAGATGGCATAGATAAAGCCCAAGAAGAGCATGAAAGATATCACAGCCATTGGAGAGCAA +TGGCCAGTGATTTTAATCTGCCACCTGTAGTAGCAAAAGAAATAGTGGCCTGCTGTGATA +AATGTCAGCTAAAAGGAGAAGCCATACATGGACAAGTAGACTGTAGTCCAGGAATATGGC +AATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTG +GCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACAGCATACTTTATAT +TAAAATTAGCAGGAAGATGGCCAGTGAAAGTAATACACACAGACAATGGCAGCAATTTCA +CCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAAGTATCACACAAGAATTTGGAATTC +CCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAGATTA +TAGGACAGGTCAGGGATCAAGCTGAACACTTGAAGACAGCAGTACAGATGGCAGTATTCA +TTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAG +ACATAATAGCCTCCGATATTCCAACTAAAGAGCTACAAAAACAAATTACAAAAATTCAAA +ATTTTCGGGTTTATTTCAGGGACAGCAGAGACCCCATTTGGAAAGGACCAGCAAAACTAC +TCTGGAAAGGTGAAGGGGCAGTAGTAATTCAAGACAATAGTGAGATAAAAGTAGTACCAA +GAAGAAAAGCAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGG +CAGGTAGACAGGATGAGGATTAGAACATGGAACAGTCTGGTAAAACATCATATGTATATC +TCTAAGAAAGCTAAAGGTTGGTTTTATAGACATCATCATGAAAGTAGGCATCCAAAAATA +TGTTCAGAAGTACACATCCCACTAGGGGATGCTATGTTAATAGTAAGAACATATTGGGGT +CTACATACAGGAGAAAGAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAG +AAAAGATACAGCACACAAATAGATCCTGACCTAGCAGACAACCTGATTCACCTGCATTAT +TTTGACTGTTTTTCAGACTCTGCCATAAGGAGAGCCATATTAGGACAAGTAGTTAGCCCT +AGATGTGAGTTTCAAGCAGGACACAATAAGGTAGGATCTCTGCAATATTTGGCACTGAAA +GCATTAGTAAAGCAGCCAAGGAGAAAGCCACCGTTGGCTAGTGTTAGGAAGTTAACAGAA +AATCGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGCCATTCAATGAATGGG +CACTAGAATTGTTAGAAGAGCTTAAACATGAAGCTGTCAGACATTTTCCTAGGCCGTGGC +TCCATGGATTAGGACAACACATCTATGAAACATATGGGGATACTTGGGAAGGGGTTGAAG +CTATAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCAACATA +GCAGAATAGGCATTATTCGAGGAAGAAGAGGCAGGAATGGAGCTGGTAGATCCTAGCCTA +GAGCCTTGGAACCACCCGGGAAGTCAGCCTACAACTGCTTGTAGCAAGTGTTACTGTAAA +ATGTGCTGCTGGCATTGCCAATTATGCTTTCTGACCAAGGGCTTAGGCATCTCCTATGGC +AGGAAGAAGCGGAGACGCCGACGAAGAACTCCTGAGAGCTGTCAGGATCATCAAAATCCT +GTATCAAAGCAGTGAGTAATAATAATCAGTATATGTAATGCAGTTTTCAGATCCTTTAAC +AATAGCTTCAATAGTAGGACTAGTAGTAGCAGTTATAGCAGCCATAGTTGTGTGGAGCAT +AGTATTGATAGAATATAGAAAAATAAGAAAACAGAAGAAAATAGACAGGATACTTAATAG +AATAAGAGAAAGAGCAGAAGATAGTGGTAATGAGAGTGATGGGGATACAGAAGAATTATC +CACCCTTCTGGAGATGGGGAATGGTGCTATTTTGGATATTGATAATTTGTAATGCTGAAA +ATTTGTGGGTCACGGTCTACTATGGGGTACCTGTGTGGAAAGAGGCAAATACCACCTTAT +TTTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTCTGGGCTACACATG +CCTGTGTACCCACAGACCCTAACCCACGAGAAATACTTATAGAAAATGTAACAGAAGAGT +TTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAAGATATAATTAGTCTATGGG +ACCAAAGCCTAATGCCATGTGTAAAGTTAACCCCTCTCTGTGTTACTTTAAATTGCTCTA +ACGTTATCAGCGGCACCTATAACAGCACCAATAATAACAGCACCTATAACATCAGCATCA +GTGCTGACATGAAAGGGGAAATAAAAAACTGCTCTTTCAATATGACCACAGAATTAAGAG +ATAAGAAACAGAATGTGTATGCACTTTTTTATAGACTTGATGTAGTACCAATTGATGCAA +AAAGTAGTAGTAATGTAAATAATAGTGATACAGGTAATAGTAGGAATACAAATAGTGGCA +GGGAGTATAGACTAATAAACTGCAATGCTTCAACCATTACACAGGCTTGTCCAAAGGTAT +CCTTTGAACCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTGAAGTGTA +ATGAGAAAACCTTCAATGGAACAGGGCCATGCAGGAATGTCAGCACAGTACAATGCACCC +ATGGAATCAAGCCAGTAGTATCAACACAACTGCTGTTGAATGGTAGTCTAGCAGAAAAAG +AGGTAGTGATTAGATCTGAAAATATCTCAGACAATGCCAAAATCATAATAGTACAGTTGA +ATGAAACTGTACAAATTAATTGTACCAGACCTGGCAACAATACAAGAAAAAGTATACATA +TAGGACCAGGGCAAGCATGGGATGCAACAACAAAAATAATAGGGGATATAAGAAAAGCAT +ATTGTAATGTCAGTAAAGCAAAATGGAATAGAACTTTACAACTGGTGGCTAGTAAATTAA +ATAAATACTTTAATAAGACAGAAATAATTTTTACTAATTCCTCAGGAGGAGATTTGGAAA +TTACAACACATAGTTTTAATTGTAGAGGAGAATTTTTCTATTGCGATACATCAGGGCTGT +TTAATAGCACTTGGGATAACATTACCAGTACAAATGGCACAAAGGTAAATGAAACTGAAA +CTATAACTCTCCCATGCAGAATAAAACAAATTGTAAGAATGTGGCAGAGAGTAGGACAAG +CAATGTATGCCCCTCCTATCCAAGGAGAACTACGGTGTGAATCAAATATTACAGGACTAC +TATTAACAAGAGATGGAGGGAATAATAATCGTACAAATGAGACCTTCAGGCCTATAGGAG +GAGATATGAAGGACAATTGGAGAAGTGAATTATATAAATATAAAGTGGTAAAAATTGAAC +CACTAGGTATAGCACCCTCCAGGGCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAG +TTGGACTGGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGCGG +CGTCATTAACGCTGACGGTACAGGCCAGACAATTATTGTCCGGTATAGTGCAACAGCAAA +GCAATTTGCTGAGGGCTATAGAGGCTCAACAACATCTGTTGAAACTCACAGTCTGGGGCA +TTAAACAGCTTCAGGCAAGAGTCCTGGCTCTGGAGAGATACCTAAGGGATCAACAGCTCC +TAGGAATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAACTCTA +GTTGGAGTAATAAAACCTATACTGACATATGGGACAACATGACCTGGCTGCAATGGGATA +AAGAAATTAGCAATTATTCAGACATAATATATAAGCTAATTGAAGACTCGCAGAGCCAGC +AGGAACAGAATGAACAAGACTTATTGGCATTGGACAAGTGGGAAAACCTGTGGAATTGGT +TTAGCATAACAAATTGGCTATGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTGA +TAGGTTTAAGAATAGTTTTTGCTGTGCTTACTATAATAAATAGAGTTAGGCAGGGATACT 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E63K","clade":"CRF21_A2D"}},"children":[{"name":"AY945737","node_attrs":{"div":0.11138999999999999,"accession":"AY945737","clade_membership":{"value":"CRF21_A2D"},"country":{"value":"KE"},"date":{"value":1991.0},"Strain_name":{"value":"KNH1254"},"LANL_subtype":{"value":"CRF21_A2D"}},"branch_attrs":{"mutations":{"nuc":["A431G","C471A","T476C","G520T","A619G","C641A","C679T","G690A","G702A","G703A","G755A","G770A","G987A","G989A","G1019A","A1112G","C1136T","T1182C","A1448G","A1450G","-1458G","-1460T","A1544G","C1613T","A1619G","A1643G","A1644G","A1762G","C1775-","A1776-","A1777-","G1794A","A1841G","C1986T","T2053C","T2215G","G2341A","G2392A","A2470G","T2476C","T2499C","A2641G","A2693G","G2704A","G2728A","G2761A","T2770A","T2776C","A2825G","G2837A","G2872A","A2881G","C2941T","A2962G","C2968A","G3004A","C3067A","A3136G","G3166C","C3252T","G3264A","G3290A","G3316A","G3334T","C3359T","A3388G","T3399C","G3564A","C3649T","G3766A","T3778C","G3869A","A3890T","G4060A","T4074G","T4075G","G4145A","C4357T","A4519T","C4534G","G4581A","A4608G","G4631A","A4684G","G4696A","T4701G","G4719C","A4763G","G4765A","G4774A","G4859A","A4863G","C4898T","C4914T","G4965A","A4966G","A4968T","G4981A","T5003C","A5005G","A5148C","A5215C","T5228C","T5286C","A5301G","A5355G","C5412T","G5437C","C5479A","G5496A","A5535C","G5557A","C5559T","G5566A","A5570C","T5577C","C5579A","A5626G","A5653G","T5686G","T5728G","G5729A","A5790G","-5809G","-5810G","C5834T","G5845A","C5850T","G5861A","C5866T","C5878T","A5907G","C5916A","A5918G","T5920C","A5921T","C5958A","C6110G","C6160T","C6163T","A6164G","T6169C","-6170T","-6172C","-6173A","-6174T","-6175C","A6177G","-6181A","-6187T","-6189C","-6194A","-6195G","-6196C","-6198C","-6199T","-6200A","-6201G","-6202C","-6203G","-6204A","-6205G","-6206C","-6207T","-6208A","C6218G","-6221G","A6223G","-6225C","A6228G","A6233C","A6251G","G6274A","A6275C","G6280A","T6285A","T6295G","T6306C","G6392A","G6451A","A6464C","A6571G","T6590A","C6603G","A6604C","A6606G","C6607G","C6612A","T6613A","C6618G","A6640G","T6648C","A6684G","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","T6719A","C6721A","A6732G","A6733T","T6735A","G6743A","G6774A","A6781T","C6797A","A6800G","A6805G","A6818G","A6837C","C6843A","T6849A","C6888A","C6919T","A6926G","T6932A","-6956T","-6958T","G6960A","A6962G","-6972C","-6975A","-6977T","-6981G","A6985C","T6988A","A6990T","T6991C","-6993A","-6994T","-6995T","-6996A","-6997A","-7003T","-7004G","-7005G","-7006C","C7020A","A7065G","A7093G","C7094A","C7096A","T7106A","C7124T","C7127A","T7153C","A7157G","G7158A","T7162A","G7168A","G7256A","G7289A","A7290C","G7375A","A7428G","A7583C","C7597T","T7622A","G7628A","G7631A","G7668A","C7678G","T7681A","C7690T","A7692C","G7735C","A7744G","A7782G","A7790G","C7801A","C7913T","G7992A","G8014A","T8047C","T8101A","C8103T","G8137A","A8138C","A8143G","T8155C","C8209T","T8239C","G8242A","A8258C","G8267T","A8275G","T8279G","A8288T","T8290C","T8366A","A8388G","A8390T","G8393A","A8405G","G8407A","C8445A","A8457C","A8461G","A8474T","A8490G","C8494A","A8525G","A8584T","C8607T","A8608T","A8653C","A8660G","T8711C","T8770A","C8809A","T8810G","G8814C","G8846A","A8859G","T8860C","T8870C","G8882A","G8888A","A8892G","C8900T","C8906A","C8911G","A8917G","A8922G","C8951T","A8967G","T8971C","T9068C","T9090C","A9095G"],"INT":["V32I","S39C","F100W","L101I","A124T","D253E","R269K","D278G","D286N"],"RT-p51":["D40E","I135T","T200A","I244V","E248K","D324E","K357N","T386I","R390K","E399K","E413D","V435A"],"RT-p66":["D40E","I135T","T200A","I244V","E248K","D324E","K357N","T386I","R390K","E399K","E413D","V435A","R476K","G490E"],"gp120":["A3T","K18R","T22A","T23S","K34T","T35K","Q86E","-111N","-112T","-115T","-117E","-118L","-122E","-123A","-124A","-125G","K127Q","I133V","R141Q","V144E","L151P","N161S","V180I","K204Q","S246T","T250S","D251R","A253E","T255S","Q277R","S278G","F289I","D297N","G307E","E309D","Q315K","R316G","N323D","-326N","N327T","N328T","T330-","T332N","T345K","N358D","K361E","N368Y","S369R","S370N","T371G","-385T","P389Q","K404R","L414I","S418T","L425I","T432N","N435D","S436K","V468I","E479T"],"gp41":["V24I","N42S","T94P","S107T","D109N","D110N","E119Q","R122K","D125E","Q130T","K144N","N160S","N163D","N166K","K172R","A267V","K279Q","G293S","I319L","V322L","C326G","I329F"],"nef":["S8R","I16V","R22K","R39Q","H40R","T50A","T51N","Y81F","H89F","Q104P","F143Y","A156E","E158Q","I173A","K184E","R188Q","A190G","K192R","I194V"],"p1":["I5V","N9H"],"p17":["G62V","K95R","D102E","A115V","A119T","G123K"],"p2":["N9S","V13A"],"p24":["V86I","M96I","S120G"],"p6":["Q28R","D32E","K33-"],"pro":["I15V"],"rev":["D7A","A15V","I19L","F21S","L22I","G56S","S67P","C85S","E97T","R99G","S103P","G111E"],"tat":["A21P","R53S","D62G","A64T","H65P","P68H"],"vif":["M8V","K33R","G37D","F39V","E45Q","G60E","R63K","R93G","E127R","R132K","N140S","I188L"],"vpr":["Y15S","P37T","I61T","Q66R","I84V"],"vpu":["I7V","T16A","F27V","C41D","-68G","P76L","D80N"]},"labels":{"aa":"INT: V32I, S39C, F100W, L101I, A124T, D253E, R269K, D278G, D286N; RT-p51: D40E, I135T, T200A, I244V, E248K, D324E, K357N, T386I, R390K, E399K, E413D, V435A; RT-p66: D40E, I135T, T200A, I244V, E248K, D324E, K357N, T386I, R390K, E399K, E413D, V435A, R476K, G490E; gp120: A3T, K18R, T22A, T23S, K34T, T35K, Q86E, -111N, -112T, -115T, -117E, -118L, -122E, -123A, -124A, -125G, K127Q, I133V, R141Q, V144E, L151P, N161S, V180I, K204Q, S246T, T250S, D251R, A253E, T255S, Q277R, S278G, F289I, D297N, G307E, E309D, Q315K, R316G, N323D, -326N, N327T, N328T, T330-, T332N, T345K, N358D, K361E, N368Y, S369R, S370N, T371G, -385T, P389Q, K404R, L414I, S418T, L425I, T432N, N435D, S436K, V468I, E479T; gp41: V24I, N42S, T94P, S107T, D109N, D110N, E119Q, R122K, D125E, Q130T, K144N, N160S, N163D, N166K, K172R, A267V, K279Q, G293S, I319L, V322L, C326G, I329F; nef: S8R, I16V, R22K, R39Q, H40R, T50A, T51N, Y81F, H89F, Q104P, F143Y, A156E, E158Q, I173A, K184E, R188Q, A190G, K192R, I194V; p1: I5V, N9H; p17: G62V, K95R, D102E, A115V, A119T, G123K; p2: N9S, V13A; p24: V86I, M96I, S120G; p6: Q28R, D32E, K33-; pro: I15V; rev: D7A, A15V, I19L, F21S, L22I, G56S, S67P, C85S, E97T, R99G, S103P, G111E; tat: A21P, R53S, D62G, A64T, H65P, P68H; vif: M8V, K33R, G37D, F39V, E45Q, G60E, R63K, R93G, E127R, R132K, N140S, I188L; vpr: Y15S, P37T, I61T, Q66R, I84V; vpu: I7V, T16A, F27V, C41D, -68G, P76L, 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A68E, L81I, V109I, G113R; tat: L8I, E9D, Q60H, P84Q; vif: Y30H, V31I, S116A, D134E, R167K, Q178R, H183R; vpr: H45Y, R85P; vpu: V5Q, V14L, K32R, 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L45I, K71Q, V112T, S119R, G163E; RT-p51: V111I, E122A, I142T, E169D, A288T, I293V, M357I, R358K, A376S, I435M; RT-p66: V111I, E122A, I142T, E169D, A288T, I293V, M357I, R358K, A376S, I435M; gp120: D4E, N5D, L6S, T22A, N52S, -107S, -109N, -110T, -111V, -112S, -116L, -118E, -119M, I156M, D157G, N158D, K212T, A253T, V264I, D293N, T308A, Q316E, K323A, S324A, N328T, T330Q, T365I, W367G, S373-, -379N, -381S, -382T, -383D, -384D, N432K, N433-, S435A, K474R; gp41: I69L, N96T, D109N, S163N, N166Q, R259Q, N305D, G326A, V329I, F340L; nef: D28E, K39R, E63G, Y81F, Y102W, C169N, M173G, E174D, R178K; p17: E15D, R20Q, R30K, R91K, E93Q, A118V, A119L, S126N, Q130H; p2: N9S; p24: V230I; p6: T39A; p7: G8N, D48E; pro: I15V, L19Q, K70T, I72V; rev: D7E, S8N, L12F, F21W, Q24K, P31T, P72S, G90E, P100S; tat: P21S, K29I, G53R, Q54K, R57G, P58L, Q63K, P68A, P70Q, P77H; vif: D61E, T67K, Y110H, H127Q, A155K; vpr: L68M, Q77R, T84Q, Q86T, R87A, S93P; vpu: S3P, V14A, R47I, E58D, E66D, 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R284G; RT-p51: I293V, K297E, V329I, G335S, R356K, I435V; RT-p66: I293V, K297E, V329I, G335S, R356K, I435V, P468S, S491P, S554N; gp120: S32A, T35A, E57I, N71D, V137L, S162R, T216S, K224R, V243I, A253V, R277-, Q300-, G307S, K309-, -378N, -381G, G431V, V468I; gp41: V24I, Q113N, E225G, I321V, V329I; nef: D24E, K151R, C169S, P176T; p17: K18S, R30K; p2: T8N; p24: G116A; p6: K31R; p7: I12T; rev: P31T, P100T; tat: K29R, L36H, Q63K, P77H; vif: V31I, K36A, K158Q; vpr: A55T, R85P; vpu: R37K"}},"children":[{"name":"JX140670","node_attrs":{"div":0.14922,"accession":"JX140670","clade_membership":{"value":"D"},"country":{"value":"CM"},"date":{"value":2010.0},"Strain_name":{"value":"DEMD10CM009"},"LANL_subtype":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["C200T","A256-","A418G","T495G","T506C","G519A","C528G","T536C","C537A","T560G","G562T","T570C","A587T","G603A","G614T","G629A","T641A","C662G","A665G","G667T","A676G","C679A","C681-","A682-","G683-","C684G","A685C","T731C","A818C","G821A","A829G","C830T","A833C","C879G","A880C","A887G","C893T","C926A","T949C","C950T","C978T","T1043C","T1052C","T1064G","A1088T","C1091T","A1115C","A1142C","C1245T","G1436A","G1458A","A1461G","A1463G","C1491T","G1496A","A1543G","A1551C","A1567G","A1642G","A1643G","G1673A","C1750T","G1766A","G1779A","A1781C","C1782A","T1783A","T1785G","C1826T","A1835G","A1907G","A1918G","G2117A","A2242G","C2263T","T2365C","A2419G","G2426A","C2452A","G2459A","T2464A","G2470A","T2479A","T2581C","A2614G","A2677G","A2705G","A2713G","A2764G","A2845T","C2857A","C2899T","C2909G","A2918C","G2926A","A2929C","A3010G","G3019A","G3027A","T3109C","T3118C","G3142A","A3145G","G3169A","A3192G","A3226G","G3238C","T3303G","G3307A","G3316A","A3391T","T3399C","A3454G","T3492C","G3523A","T3550C","C3691T","C3751T","G3770A","T3778C","A3802G","A3816G","T3850C","G3869A","T3889C","A3907G","A3985G","C4076A","G4148A","T4177G","C4192T","G4407A","C4534T","G4549A","A4555G","G4573A","A4642G","C4643G","C4645T","T4665C","T4679C","G4689A","G4774A","C4786T","A4787C","T4793C","G4829A","G4835A","G4856A","C4937A","T4988G","G5049A","C5050A","T5152C","A5159G","G5189A","A5191G","A5248C","T5281C","C5282T","C5303T","C5356T","T5451C","A5483G","T5484G","A5494T","G5496A","G5546A","C5554A","G5558A","A5564C","G5565A","G5589T","T5614C","T5626A","A5628T","G5629T","G5650A","A5707C","A5709G","G5712A","C5731T","C5756A","T5778C","A5800G","A5805C","A5840T","A6009G","G6023A","A6044C","A6045C","C6046T","G6076A","T6169A","T6171-","T6178-","A6185C","-6187C","A6188C","-6198C","A6200C","-6201A","C6202G","-6203T","-6204C","-6205G","-6206G","-6207T","-6208T","-6209A","-6210A","-6211C","-6212A","-6213C","-6214C","-6215A","-6216C","-6217C","-6218G","-6219A","-6220C","-6222C","A6226-","A6229C","A6234G","A6262G","A6266C","G6267A","A6278C","C6281A","G6284A","T6295C","G6303A","C6305A","T6307G","A6311C","A6313G","A6324G","T6328G","A6333G","G6339A","T6340G","G6379A","A6394G","A6396G","A6464C","G6526A","C6599A","C6601T","C6619T","C6632T","T6637G","A6638G","T6652C","T6655G","A6659G","T6660A","C6670T","A6683-","G6684-","A6685-","-6690G","G6712A","A6714G","G6716T","-6752A","A6754C","C6758T","A6767G","G6774-","A6776-","C6781T","A6799T","A6809G","G6810A","T6849A","T6850A","A6854G","A6856G","T6860G","C6862T","T6863G","A6887G","T6898C","T6928C","A6937C","A6947G","A6949C","-6957T","A6962G","T6964C","-6968A","-6969G","-6970G","-6972A","-6974G","-6975A","-6976C","-6977A","-6978C","-6980A","-6981G","-6982G","-6983A","-6984C","-6985T","A6989-","A6990-","T6991-","A6992-","-6998A","A7001G","A7002G","-7006T","C7014-","C7015-","A7016-","C7084T","G7088A","A7113C","A7115G","T7117G","C7127A","A7136G","G7137T","G7143A","T7144A","A7154T","A7155C","C7156G","A7158G","-7160C","-7163G","T7165G","A7167C","A7237G","C7264A","T7313C","A7315G","G7477A","A7494T","A7552G","C7597T","G7628A","A7640G","A7641G","A7678C","T7681G","T7690G","A7714C","A7744G","A7799C","A7832G","T7864C","G7882A","A7885G","G7896A","T7912C","C7913T","C8080A","T8112C","G8117A","A8184G","C8213T","A8216G","G8245A","T8265C","A8271T","G8280T","A8294C","A8299C","G8329A","T8375A","A8402G","T8414G","A8490C","T8492G","C8503A","A8636T","A8657G","T8666A","G8753A","G8762A","T8789C","A8806G","A8816G","A8827C","A8844G","A8885G","G8893A","T8897C","C8921T","A8924G","G8931C","G8942A","G9016-","T9019G","G9095A","T9098C","C9129T"],"INT":["K14R","V32I","L101I","R211K"],"RT-p51":["V8I","V111I","E122K","D123E","A200T","K204E","E250D","P272A","K275Q","Q278H","R311K","K366R","T377M","M403R","E432D","V435A"],"RT-p66":["V8I","V111I","E122K","D123E","A200T","K204E","E250D","P272A","K275Q","Q278H","R311K","K366R","T377M","M403R","E432D","V435A","V466A","I517L","V559I"],"gp120":["N52S","N64P","D105E","V106T","-107H","-109T","-110T","-111D","-112T","N113D","S114M","S115R","E125-","K127-","V136M","R138Q","K142Q","Q143K","E144K","R150K","L151M","I153L","D157G","N158K","N160S","R162K","K204Q","L249I","L260F","N261K","I269E","-277S","Q287R","A288S","-300N","H302Y","I305V","S307T","T308N","Q315H","K319E","N328K","I332K","K334E","S336A","S337A","T345A","K361Y","T365G","N368I","S370G","-372R","S373N","-374D","-375T","-376R","-377T","-379G","-384D","T387I","I388-","A412K","N420T","I421V","L425I","R428V","G430E","N434S","S436P","N437E","E438A"],"gp41":["Q64L","D109N","N113G","E125D","N126K","E137D","S165T","N166Q","I177V","M193I","R198K","I270T","Q294R","L304F","N305D","V321A","Q323L","C326F","N331H","F340L"],"nef":["I20M","T50Q","A54D","E64D","E98D","D108E","E155G","N162T","M168V","R184K","E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E197Q; p1: K4R; p17: K28R, S54A, G62S, Q65E, R76I, F79H, E90K, E93D, D102E, N109K, S111I, K114R, A115E, Q116A, Q117-; p2: M4I, S10-, A12T, I13V; p24: E29D, N33S, Q50A, I73T, E128D; p6: P11L, A12E, -23L, P24S, S25-, E34N, L35K, Y36D, T39A; p7: P9S, K26R, K34R; pro: L10F, I13V, N37D; rev: D11N, R17Q, S25I, L78I, G90E; tat: H36R, T40S, R57K, Q60K, K63T, E71D; vif: N19R, T20I, Y27H, A35T, R63K, T67I, D117E, D134E, A155K, M189T; vpr: T19A, E29K, E48D, T84I; vpu: S3P, L7I, A8S, A15T, K34Q, A50E, M65V, E66D, D78I"}}},{"name":"MN153488","node_attrs":{"div":0.14864999999999998,"accession":"MN153488","clade_membership":{"value":"D"},"country":{"value":"CM"},"date":{"value":2008.0},"Strain_name":{"value":"08CMBDSH25"},"LANL_subtype":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["A435C","T466A","A513T","G520C","A530T","G546A","A548T","C558T","A569G","G579C","G582T","A585G","C586T","A587G","T602G","A604C","C623T","T635C","A666T","G677A","A706G","G752A","C774A","C794T","T992G","G1002A","G1019A","T1094C","A1101G","A1112G","G1139A","T1187C","A1217G","C1229T","T1344A","A1404G","C1440A","A1441G","A1486G","G1487A","G1488A","C1490T","C1517T","A1656C","G1670A","C1676T","G1687A","C1692A","A1736G","T1754G","T1791A","G1794A","A1832T","A1841G","G1846A","C1853A","A1879G","A1926G","G1972A","C2044T","T2086C","A2215G","T2302A","T2323C","A2329G","T2338C","G2341A","C2452T","G2686A","A2693G","A2698G","A2727G","A2845G","G2847A","G2902A","G2968A","A2977G","G3004A","T3022C","T3121C","C3178T","A3196G","T3225C","G3388A","G3431T","A3532G","A3643C","T3644A","A3718G","G3796A","T3805G","C3814T","C3922A","A3934G","T3943C","T3970C","A3989G","T4085C","A4178G","C4318A","T4321C","G4351A","C4569T","G4581A","T4678A","T4679A","G4695A","C4726A","G4751A","G4778A","T4910C","C5018A","G5137A","A5155G","T5170C","A5213G","A5215G","G5225A","T5292C","C5303A","C5311T","A5312G","T5314C","A5360T","C5412T","G5437C","T5475C","G5538A","A5586G","A5612C","T5621A","G5652A","C5653A","A5659C","A5685C","G5711A","A5746G","G5747A","G5781T","G5784A","A5794C","C5795A","C5851A","A5853G","G5864A","A5867C","T5869G","T5871C","G5872A","A5884G","A5918G","C5920T","G6023T","G6029A","A6060G","C6097T","C6110G","C6139A","C6151T","-6170G","-6179G","-6180T","-6181G","A6182T","T6184C","-6187A","A6188G","A6191G","T6193C","G6195A","-6198G","-6201G","-6222A","-6224A","-6225G","A6230C","A6251G","A6275G","A6285C","T6287C","A6292T","A6311G","A6329C","C6336G","T6337G","T6340C","C6364T","A6388T","G6434-","A6461C","A6462C","G6463A","C6477A","C6481T","C6483A","G6532A","T6551A","G6566T","G6605A","G6628A","G6631A","A6641G","A6685G","A6689-","A6703G","C6713A","C6717T","C6719T","C6721T","T6722G","A6723C","T6724A","A6732G","-6775T","C6777A","A6779G","A6811T","G6818A","A6821G","C6835T","A6837T","A6839T","A6856C","C6857T","A6868G","A6884G","A6891T","G6906C","T6935C","C6938T","G6948C","-6957A","G6963A","A6967T","-6972G","-6974A","-6975C","-6976A","-6977G","-6978G","-6993C","-6994A","-6998T","C6999T","A7001C","A7005G","-7006A","C7008A","A7009T","T7047G","C7078T","A7089C","C7094G","A7095T","A7101G","T7106G","C7107A","C7124T","G7145A","T7147G","A7148G","A7149G","T7159G","-7160T","-7163A","T7217C","A7219G","A7238G","A7275G","T7321C","T7386C","G7441A","T7444G","G7459A","G7519A","A7542G","T7565G","T7567A","T7604A","G7608C","G7620A","A7621G","C7625G","A7629C","G7631A","T7633A","G7642T","C7702A","A7706C","A7721G","A7734C","C7770A","A7790G","G7791A","C7797G","A7801C","C7843G","G7915C","A7918G","A7984C","A7992G","G7998A","C7999T","G8001C","G8014A","A8032G","C8033A","C8051A","A8093C","G8105A","C8119A","G8173A","G8255A","A8262C","G8276A","C8277T","A8323T","T8366G","T8369C","A8378G","G8412C","A8413C","A8455C","A8458G","A8491G","C8494A","C8500A","T8501G","A8516G","A8531G","G8588A","G8643A","A8647G","C8648G","A8657C","C8687T","C8740T","G8772C","T8786A","A8793G","A8801G","G8822A","T8843C","G8848A","G8852A","C8869A","G8888A","A8909C","A8918G","A8922G","A8923C","T8939C","C8960T","C8966A","G8968A","C8971T","G9030T","C9072T"],"INT":["D10E","I72V","T125A","I135V","F181L","A265V","R269K"],"RT-p51":["K211R","S251N"],"RT-p66":["K211R","S251N","A446S","E516D"],"gp120":["D4N","N5Q","L6S","T22A","I57L","E59K","K69R","Q86E","-107K","N108V","-109D","-123K","-124R","-126L","I133V","V136I","K141E","E144A","Y145H","I153V","N159H","T161R","G194-","K203P","T208K","P210Q","L233M","A238S","D251N","E262K","T263A","I269M","S278-","I279-","T308K","-309D","K319S","G322R","K323E","N328I","T329S","K334N","P335S","T344A","H346L","G351A","K361Q","S370N","-372S","S373T","-374G","-379N","-382L","-383Q","-384G","T385N","M398R","Q414V","K416R","S418E","V431M","N432G","S435K","R462G","K474R"],"gp41":["V28A","Q80R","S88A","S101T","S102T","R106K","L108V","D109A","D110K","N133K","I135L","I140V","K144T","A156E","S163D","D230G","G232D","R233T","L244I","I264L","A268T","N272E","V318I","E320A","A325I"],"nef":["S8R","E24P","E38A","K39R","T50S","T51N","A53E","V101I","Y102W","K105N","T133I","E144Q","R151G","S169N","T176K","K194A"],"p1":["N9H"],"p17":["I34L","F44Y","I60L","G62A","Q65H","I68L","G71S","L75F","F79Y","V82L","A83S","T84V","H89Q","E90A","S111C","N124S"],"p2":["Q6R","S10A","A12-"],"p24":["L15I","H87Q","V91I","M96I","I124V","L205M","S225G"],"p6":["S3N","P5T","L38I"],"p7":["K7R","G8S"],"pro":["T12S","I15V","L19I","K43R"],"rev":["S8N","T15A","Q24R","Q51Y","G56S","T62D","A68E","N82T","S86N","P91T","V109I"],"tat":["A21P","D61G"],"vif":["I31K","G37R","P47H","R184K","N190S"],"vpr":["I37V","G41S","I63T","L67I","I70V"],"vpu":["Q2P","V5E","L16I","I18L","R35K","R4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D10E, I72V, T125A, I135V, F181L, A265V, R269K; RT-p51: K211R, S251N; RT-p66: K211R, S251N, A446S, E516D; gp120: D4N, N5Q, L6S, T22A, I57L, E59K, K69R, Q86E, -107K, N108V, -109D, -123K, -124R, -126L, I133V, V136I, K141E, E144A, Y145H, I153V, N159H, T161R, G194-, K203P, T208K, P210Q, L233M, A238S, D251N, E262K, T263A, I269M, S278-, I279-, T308K, -309D, K319S, G322R, K323E, N328I, T329S, K334N, P335S, T344A, H346L, G351A, K361Q, S370N, -372S, S373T, -374G, -379N, -382L, -383Q, -384G, T385N, M398R, Q414V, K416R, S418E, V431M, N432G, S435K, R462G, K474R; gp41: V28A, Q80R, S88A, S101T, S102T, R106K, L108V, D109A, D110K, N133K, I135L, I140V, K144T, A156E, S163D, D230G, G232D, R233T, L244I, I264L, A268T, N272E, V318I, E320A, A325I; nef: S8R, E24P, E38A, K39R, T50S, T51N, A53E, V101I, Y102W, K105N, T133I, E144Q, R151G, S169N, T176K, K194A; p1: N9H; p17: I34L, F44Y, I60L, G62A, Q65H, I68L, G71S, L75F, F79Y, V82L, A83S, T84V, H89Q, E90A, S111C, N124S; p2: Q6R, S10A, A12-; p24: L15I, H87Q, V91I, M96I, I124V, L205M, S225G; p6: S3N, P5T, L38I; p7: K7R, G8S; pro: T12S, I15V, L19I, K43R; rev: S8N, T15A, Q24R, Q51Y, G56S, T62D, A68E, N82T, S86N, P91T, V109I; tat: A21P, D61G; vif: I31K, G37R, P47H, R184K, N190S; vpr: I37V, G41S, I63T, L67I, I70V; vpu: Q2P, V5E, L16I, I18L, R35K, R47E, E58D, T63Q, D78N, 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K14R, N17S; RT-p51: I135T, E207Q, R211K; RT-p66: I135T, E207Q, R211K; gp120: A3E, S32A, -110T, -112T, -113N, -123K, V137I, R150K, I242V, I243M, A253T, H302Y, K328T, P341L, V468I; gp41: R106K, Q113E, E148D, N160T, N195K, N239T, A243S, C326G, L330I; nef: I16V, D24E, K39R; p6: S25P, E29D, K42R, L50S; pro: E35D, A71V; rev: V16I, E57N, S61E, T62S; tat: G62D; vif: Y30H, E61D, P156S; vpu: I18L, K34R, 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S24G, D25E, L28I, M50I, A91E, S119R, T122I, A124S, T218I; RT-p51: D123E, T165I, E169D, T200I, P272Q, A288S, I329L, G335E, A376S, T377L, G379C, K385R, T386I, E399D, T400L, I403V; RT-p66: D123E, T165I, E169D, T200I, P272Q, A288S, I329L, G335E, A376S, T377L, G379C, K385R, T386I, E399D, T400L, L452I, V466I, V467I, K527Q, V559I; gp120: S1N, A2G, E3K, E4K, N5D, T21S, I56M, N64S, H77Q, -106L, -107K, -109D, -111N, -114S, -115S, -116S, -117G, -118R, -119M, -120I, -121M, -122E, -124E, K127R, R138E, K142E, Q143K, P155Q, I156M, N159T, N160T, T161-, S162-, T170I, K224R, T253I, V258I, L260F, E262K, T275R, R278K, I279T, -280S, -281I, -284G, -285Q, -286G, -287Q, -288A, -289L, -290Y, -291T, -292S, -293Q, -294K, I298V, R299K, I305V, E309D, N311Q, T313M, L314I, Q316E, L325Y, T330R, T332E, P335S, T345R, S365N, S373-, N378-, T380-, I386-, T387-, L388-, I396V, M398L, G401T, K404T, I411R, A432K, N437T, T439I, R472G, E479Q, K482R; gp41: A6V, V33L, L54M, H91L, T96A, D109E, E113G, M115L, Q119E, D137K, I140T, K195R, P213S, E220D, I222T, R229L, A310V, V311T, V318I, V322A, I332V, L340A, L343F; nef: S8R, T23A, A27S, V33A, C55T, Y81F, E98D, K104Q, Y120F, I133V, Y135F, E144K, E155K, A156L, E158A, T161D, M168L, E174D, P176S, Q179E, K182Q, R184K, N186D; p17: A15K, K18G, R39N, S54A, A67S, Q69K, L75I, K76Q, E90Q, R91G, E102D, S111N, K114Q, D121G, Q127N; p2: A7V, N9G, A11T; p24: P123A, S225G; p6: P24-; p7: I12S, I13V, K26R, R41K, D48E; pro: L19I, M36I, N37D, I72E; rev: F21I, P31L, R48G, N84D, E87A, P100T, S106P, V109I; tat: R19E, A21P, H60N, V67D, I69V, K71E, K85T; vif: V31I, K36Q, F39L, E78D, R93K, M109I, K122Q, H127R, I128V, E134D, Q136P, K141Q, T159R, K181R, S186N; vpr: A55T, I70T; vpu: I7L, A8G, V13I, V14L, Y30C, I33L, R35K, E58D, K63A, H74L, D78N"}}},{"name":"KJ787683","node_attrs":{"div":0.14211,"accession":"KJ787683","clade_membership":{"value":"D"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_RJ108"},"LANL_subtype":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["C200T","A263T","A425G","A437C","C482T","C525T","A557G","A585G","C586T","A604C","G607A","G614T","G615A","A645T","A661G","G671T","G687A","A697C","G709A","G771T","A809G","A836G","C890T","C897T","T988C","T992G","T1003A","G1005C","A1007G","G1016A","G1019A","G1077A","C1091T","C1137T","G1192A","A1208G","T1214C","C1229T","C1253A","C1304A","A1328G","A1337G","G1388A","G1397A","C1406T","A1418G","G1450A","T1457C","A1464C","T1483A","G1553A","G1562A","G1670A","G1673A","T1679C","A1691G","G1725A","G1736A","T1741C","-1746C","-1747C","-1748C","C1749T","C1751T","A1781C","A1835G","G1846T","T1895C","C2071T","C2083T","A2140G","T2206A","G2241A","A2242G","C2281T","A2344G","A2491C","G2548A","A2560C","A2569T","A2627G","A2629G","C2671T","A2674G","A2722G","A2734T","A2752G","T2788G","A2818G","C2831T","A2841G","G2847T","G2869A","T2905A","A2951G","A2972T","G2984A","A3058C","C3067A","A3095G","G3166A","A3214G","G3221A","G3250A","G3280A","T3303C","G3388A","C3394T","T3436C","C3444G","G3477A","C3497T","G3523A","G3529A","T3550C","G3562A","A3571G","A3595G","A3622G","G3651A","G3664A","C3665G","C3692T","A3745G","A3808G","G3989A","C3994T","C4021A","T4024C","G4057A","A4084G","A4106C","G4112A","C4129T","T4147A","A4196G","G4252A","A4315T","A4354G","A4385C","C4534T","A4642G","T4676C","T4701A","G4708A","A4709G","C4757T","G4770A","C4771G","C4776T","G4829A","A4858C","A4863G","T4914C","A4937G","G4953A","T4967G","T4973C","A5042C","G5049A","A5122G","A5173G","T5188G","T5203C","G5212A","A5213G","A5215G","C5237T","A5284C","T5293G","C5294T","G5296A","T5303C","C5356T","C5398T","A5446C","C5452T","A5453T","G5587A","C5602T","G5650A","C5653G","T5654G","T5669C","G5700A","A5718G","T5829G","A5840T","A5907G","C5917T","T5941C","T5971C","A6020G","G6029A","A6030C","G6079A","A6092G","A6142C","T6155C","C6160T","G6167A","-6175T","A6177C","A6186G","A6194T","G6195T","T6196A","A6200G","A6212C","A6215C","A6219T","A6221C","G6224A","A6226C","A6233C","A6273G","A6320T","C6325A","A6330G","T6331C","A6333G","C6337T","T6358C","T6382G","A6430T","A6505G","A6508G","A6606G","A6661C","G6688-","A6689-","C6690-","A6691-","T6692-","C6693-","T6696C","-6697A","-6698C","-6699A","-6700A","-6701A","-6702T","G6716A","C6719T","G6774A","G6779A","A6785G","A6790T","A6791G","A6814G","A6821G","A6822G","A6854C","T6863A","C6864T","G6935A","G6936A","T6949C","A6957T","C6963G","T6964C","-6971A","-6972A","-6973T","-6974A","-6975A","-6976T","-6977A","A6984G","-6985T","A6990G","-6997T","-6998A","-6999A","-7000T","A7002G","G7004A","-7006T","A7013C","T7105C","G7132A","A7138G","G7146A","A7148G","A7149G","A7152T","A7154T","G7155C","C7158A","T7159G","-7160G","C7171T","T7172G","G7190A","A7255G","G7357A","C7407T","C7429T","C7498T","A7542G","A7589T","T7604A","T7624C","A7627G","G7628A","T7630C","A7666G","G7676A","G7701A","A7706C","A7714C","A7744G","T7748C","G7777A","A7790G","G7791A","C7792T","A7800G","A7818G","A7885G","T7888G","A7918G","A7969C","C7988A","C8005A","T8007C","G8017C","A8019T","C8028T","T8047C","A8055G","C8062T","A8076G","A8086C","T8097C","G8105A","A8118G","G8158A","G8170A","A8180G","C8221T","T8223C","A8227T","G8245A","T8257A","G8267T","G8276A","C8277T","T8293C","C8302T","G8323A","C8330G","T8331C","A8342G","C8351T","A8378G","A8503C","G8534A","A8536G","G8537A","G8540A","C8543T","C8552T","G8561A","C8590G","G8595C","A8597G"],"INT":["V72I","K111Q","V113I","I141V","I204L"],"RT-p51":["R49K","I178V","K249R","S251I","T286A","I293L","E297K","D324E","N334D","A376T","I403T","M435I"],"RT-p66":["R49K","I178V","K249R","S251I","T286A","I293L","E297K","D324E","N334D","A376T","V403T","M435I","T450S","R461K","P468S","S519N","Q524E"],"gp120":["K18R","I56V","E59T","I80V","D105S","-106A","-107N","-109C","-111S","-114L","-115T","-116G","-122P","K123R","-124L","K127Q","K140R","I156L","D157E","N159S","N160S","N251S","Q277K","G307E","E309N","N311D","E312N","T313A","K319R","N323G","T332N","K334Q","S337I","G361K","N368K","-374T","-375N","-376N","-377S","-379S","T387Q","G431D","A432G","-433I","N434S","S435K","S436D","F440V","D446N"],"gp41":["S35F","Q80R","T96S","S101T","D109N","D125N","S133N","I135L","S163D","N166R","K172R","I235T","T239I","S242L","N251S","H258R","R261S","L265S","A268T","E272G","S293G","I307T","V322L","A325I","L343A"],"nef":["D54A","E65G","A83G","V85L"],"p17":["T84V","E90A","R91K","E93D","V94I","I104L","N109S","K112N","A118T","D121A","S125N"],"p2":["M14L"],"p24":["A14S","V86A","H87Q","V91N","A92P","M96I","A116T","R154K"],"p6":["G16R","I21T","-23P","P24S","P25Q","E34D"],"p7":["F6Y"],"pro":["I13V"],"rev":["A47E","H53N","N57H","S67P","P72S","S86N","V104M","A108T","E111G"],"tat":["K24Q","H26F","Q87S"],"vif":["N19S","F39I","R41K","A62S","K91T","R93G","Y110H","A123T","H127Q","S130R","A155T","K179R"],"vpr":["S28R","I37V","H45Y","I63M","T84I"],"vpu":["A15T","L16G","V21A"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V72I, K111Q, V113I, I141V, I204L; RT-p51: R49K, I178V, K249R, S251I, T286A, I293L, E297K, D324E, N334D, A376T, I403T, M435I; RT-p66: R49K, I178V, K249R, S251I, T286A, I293L, E297K, D324E, N334D, A376T, V403T, M435I, T450S, R461K, P468S, S519N, Q524E; gp120: K18R, I56V, E59T, I80V, D105S, -106A, -107N, -109C, -111S, -114L, -115T, -116G, -122P, K123R, -124L, K127Q, K140R, I156L, D157E, N159S, N160S, N251S, Q277K, G307E, E309N, N311D, E312N, T313A, K319R, N323G, T332N, K334Q, S337I, G361K, N368K, -374T, -375N, -376N, -377S, -379S, T387Q, G431D, A432G, -433I, N434S, S435K, S436D, F440V, D446N; gp41: S35F, Q80R, T96S, S101T, D109N, D125N, S133N, I135L, S163D, N166R, K172R, I235T, T239I, S242L, N251S, H258R, R261S, L265S, A268T, E272G, S293G, I307T, V322L, A325I, L343A; nef: D54A, E65G, A83G, V85L; p17: T84V, E90A, R91K, E93D, V94I, I104L, N109S, K112N, A118T, D121A, S125N; p2: M14L; p24: A14S, V86A, H87Q, V91N, A92P, M96I, A116T, R154K; p6: G16R, I21T, -23P, P24S, P25Q, E34D; p7: F6Y; pro: I13V; rev: A47E, H53N, N57H, S67P, P72S, S86N, V104M, A108T, E111G; tat: K24Q, H26F, Q87S; vif: N19S, F39I, R41K, A62S, K91T, R93G, Y110H, A123T, H127Q, S130R, A155T, K179R; vpr: S28R, I37V, H45Y, I63M, T84I; vpu: A15T, L16G, V21A, H74Q, D78V"}}}]}]}]}]}]}]}]},{"name":"D_NODE_0000016","node_attrs":{"div":0.06387999999999999,"clade_membership":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["C23T","G32A","A152T","G702A","A1496G","T1679C","T2195C","T2369C","G2602A","A2713G","G2926A","A2962G","A3224C","C3225A","A3230T","A3364T","A3538C","T3820C","A4069C","T4703G","T4932G","C5237T","T5293C","G5370A","G5437C","C5548A","A5560G","C5679T","A5694G","A5696G","A5702G","C5763T","A5805G","C5851A","C5998A","A6076G","C6190-","T6287C","A6313G","T6337C","T6358C","T6395A","T6457C","A6640G","A6683C","C6827T","C7127T","T7222C","G7256A","A7373T","G7668A","C7690T","G7701A","T7722C","T7748C","A7918G","G8105A","G8181T","G8280T","A8432G","C8491A","C8543T","T8567A","T8603A","C8741T","G8931A","A8932T","G9015A","C9108T","G9117A"],"RT-p51":["I178M","S379C"],"RT-p66":["I178M","S379C"],"gp120":["N5K","Y145H","K277Q","A291T","G293K","-294I","N323D","-379N","V468I"],"gp41":["R122K","S133N","A268T","C326F","V329I"],"nef":["T50E","E197I"],"p17":["G123R"],"rev":["S86N"],"tat":["A21P","P58T","S61G","S62G"],"vif":["F39L","S116A"],"vpr":["H45Y","A89T"],"vpu":["Y30C","K32R","L82M"]},"labels":{"aa":"RT-p51: I178M, S379C; RT-p66: I178M, S379C; gp120: N5K, Y145H, K277Q, A291T, G293K, -294I, N323D, -379N, V468I; gp41: R122K, S133N, A268T, C326F, V329I; nef: T50E, E197I; p17: G123R; rev: S86N; tat: A21P, P58T, S61G, S62G; vif: F39L, S116A; vpr: H45Y, A89T; vpu: Y30C, K32R, 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rev: S8R, P28F, P77S, S106P; tat: E2D, N7S, T58S, S74F, *87Q; vif: R19K, L39W, K181M, G182D; vpr: Q8H, V37I, H40Q, S41N, A59T, A93S; vpu: Q2T, R32K, K34R"}}}]},{"name":"D_NODE_0000028","node_attrs":{"div":0.08793000000000001,"clade_membership":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["G518A","-6223A","G6818A","T6961-","A6962-","A7001-","T7003-","T7153A","G7315A","G8595T","C8934A"],"gp120":["N158D","G322R","K328N","N378-","T380-"],"nef":["V85L"],"p17":["M61I"]},"labels":{"aa":"gp120: N158D, G322R, K328N, N378-, T380-; nef: V85L; p17: 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H74L"}}},{"name":"AF484498","node_attrs":{"div":0.1336,"accession":"AF484498","clade_membership":{"value":"D"},"country":{"value":"UG"},"date":{"value":1999.0},"Strain_name":{"value":"99UGK09259"},"LANL_subtype":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["A360C","G367A","A380C","A387G","A388G","A425G","A435C","G455A","T495G","A516C","G520A","C525T","C558G","A571T","A585G","C586T","T591C","A592T","A604C","G608A","T635C","A660G","A673G","A702G","C723A","T731C","A742G","C747A","G771C","G829A","C830T","T858C","C890T","G1078A","A1079C","A1089G","G1205A","T1262C","G1301A","G1313A","C1316T","G1355A","T1362C","G1394A","A1404G","T1406C","C1444T","A1450C","A1453G","C1459G","A1461G","C1490T","C1492A","A1536T","A1543G","G1552A","A1664G","C1676T","-1746C","-1747C","-1748T","C1749-","C1750-","C1751-","G1766A","G1769A","G1770C","C1782A","T1785C","A1819G","G1848A","A1861G","A1907G","C1987T","A2007G","A2023G","A2119G","C2195T","T2237A","G2248T","G2363A","T2456C","C2464T","A2470G","T2499C","A2515G","A2524G","C2533T","A2627G","T2694C","A2697C","G2714A","A2722C","G2725A","T2737A","G2902A","C2909G","C2942A","A2995G","A3001G","C3023T","G3154A","T3165G","A3173G","G3238A","A3302G","A3409G","T3412C","T3493G","A3529G","A3574G","A3622G","A3630G","G3643A","T3652C","G3667A","A3674C","G3718A","C3763T","C3826T","T3850C","C3857A","G3859A","T3898C","T3904C","G3989A","A4063G","A4064G","C4069A","A4090C","A4107G","G4112A","C4146A","G4151C","C4162T","C4204T","A4222T","A4225G","G4262A","G4263A","G4354A","G4495A","A4543C","G4573A","A4644G","A4664G","G4673A","T4674C","G4677A","T4679A","C4692A","A4728C","T4772C","A4784G","A4786G","A4838G","A4859G","A4911T","T4943C","A4949G","A4952G","T4967G","T5003C","A5049G","C5053A","T5072G","A5215G","T5221C","A5225G","G5257A","A5282T","A5285C","A5291T","T5296G","C5306T","A5312G","A5369G","C5412T","A5431G","G5432A","T5436C","G5448A","A5491G","A5537T","A5544G","A5547C","A5548G","C5551T","A5555C","G5565A","A5601G","T5626G","T5627G","T5704G","A5748T","G5775A","G5781T","G5794A","T5799C","G5800A","G5805A","G5839A","T5850C","A5861G","G5957A","C5958A","A6030G","A6061G","A6065G","G6076A","C6115T","A6173G","-6175G","-6179A","-6181T","C6183A","T6184G","-6186A","A6188G","-6192C","-6196T","-6198A","-6199T","-6201C","-6202T","-6203A","-6204G","-6205T","-6206A","-6207A","-6208T","-6209G","-6210T","-6211C","-6212A","-6213C","-6214T","-6215A","-6216A","-6217T","-6220A","-6221A","-6222T","-6223A","-6224G","-6225G","A6237T","A6273G","A6288C","A6330C","T6331C","G6403A","C6412T","T6438A","A6442G","A6465C","C6469T","A6488C","G6547A","G6553A","A6571G","C6648T","C6658T","C6673T","C6683A","A6686G","T6688C","A6695G","-6697G","A6703-","C6729A","T6772C","T6794C","A6820C","G6821A","A6836C","A6855G","G6905A","T6932G","G6935A","C6938T","-6947T","G6948A","A6950G","C6951A","-6956A","-6957G","-6958T","-6963A","-6968T","-6969T","-6970A","-6971G","-6972C","-6973T","-6974A","-6975G","-6976T","-6977A","-6978C","-6979A","-6980G","-6981G","-6982G","-6986A","-6987A","-6988T","-6989G","-6990A","-6991C","-6993G","-6994T","-6995A","-6996A","-6997A","-6998G","-6999G","-7000G","-7002A","-7004G","-7005A","-7006C","-7008G","-7009T","C7089A","A7090G","A7101C","G7195A","A7198G","A7269G","G7315A","A7372C","C7429T","G7438A","G7440T","G7517C","C7609T","G7631A","C7645T","T7722C","T7774C","G7846A","A7855G","G7918A","T7921C","C7939T","T8008A","C8048T","A8105G","A8152G","G8156T","A8219G","C8221T","A8228G","G8255A","T8257C","A8273G","G8279T","G8288-","T8289-","C8291-","T8292-","A8297G","G8318A","T8321G","T8322C","A8342G","T8366C","G8368A","T8369G","A8372G","T8374G","C8382T","A8388G","A8409G","C8460T","G8479C","C8480A","A8537G","T8594A","G8666C","C8702T","C8715G","A8717T","A8739G","A8744G","G8772A","A8793G","G8796A","A8809C","T8835C","G8846A","G8870T","G8888A","A8898G","G8924A","G8929A","A8931C","T8932A","G8936A","A8954C","C8967T","T9040C","T9060A","T9068C","T9075C","C9078T"],"INT":["L28I","V72I","T97A","K111R","V113I","T124N","V126L","G163K","E256D"],"RT-p51":["S48T","V90I","D121H","I135T","M178V","I200T","K201T","E207K","F214L","P272A","L283I","M357R","T360A","T403A"],"RT-p66":["S48T","V90I","D121H","I135T","M178V","I200T","K201T","E207K","F214L","P272A","L283I","M357R","T360A","T403A","K512R","K527Q"],"gp120":["S1N","T3A","A35K","E59G","N71D","-106W","-107E","-109K","T110D","N111A","-112T","-113N","K140R","H145S","N158D","N159T","F195Y","D202N","K204T","K212Q","T265V","Q277K","I281V","L289F","T292N","I295V","E309K","Q315E","G322S","D323S","K328Q","K334R","G351R","S360A","G361R","S365Y","-366E","N369-","S370-","T371-","-377S","-381L","-382A","-383S","T385S","P389Q","K416T","M447I","R462K","I463L"],"gp41":["R46M","V72L","S107T","D109N","E110K","N113D","T268A","T306A","I309V","V318I","R324G","V326F","V329-","L330-"],"nef":["S9K","I10M","V11G","P14S","I16V","T23A","H40Y","S46T","I101V","E108D","Q125D","I133V","E144K","E152K","D156A","M168I","C169N","M182I","N186D","R196Q","I197Q","K204N","D205K"],"p17":["S9R","G11E","K18G","S54A","M61L","G62E","L75V","Y79F","T84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L28I, V72I, T97A, K111R, V113I, T124N, V126L, G163K, E256D; RT-p51: S48T, V90I, D121H, I135T, M178V, I200T, K201T, E207K, F214L, P272A, L283I, M357R, T360A, T403A; RT-p66: S48T, V90I, D121H, I135T, M178V, I200T, K201T, E207K, F214L, P272A, L283I, M357R, T360A, T403A, K512R, K527Q; gp120: S1N, T3A, A35K, E59G, N71D, -106W, -107E, -109K, T110D, N111A, -112T, -113N, K140R, H145S, N158D, N159T, F195Y, D202N, K204T, K212Q, T265V, Q277K, I281V, L289F, T292N, I295V, E309K, Q315E, G322S, D323S, K328Q, K334R, G351R, S360A, G361R, S365Y, -366E, N369-, S370-, T371-, -377S, -381L, -382A, -383S, T385S, P389Q, K416T, M447I, R462K, I463L; gp41: R46M, V72L, S107T, D109N, E110K, N113D, T268A, T306A, I309V, V318I, R324G, V326F, V329-, L330-; nef: S9K, I10M, V11G, P14S, I16V, T23A, H40Y, S46T, I101V, E108D, Q125D, I133V, E144K, E152K, D156A, M168I, C169N, M182I, N186D, R196Q, I197Q, K204N, D205K; p17: S9R, G11E, K18G, S54A, M61L, G62E, L75V, Y79F, T84V, Y86L, E90A, T109A, K113R, Q130K; p2: A7V, N9T, 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V","A93T"],"vpu":["Q2P","P3A","R32K","R35G","K38R","-69V","-70E","-71M","-72G","D78P"]},"labels":{"aa":"INT: 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I21T, E29G, K31E; p7: R10K, I12N, E21V; pro: T12A, L19P, L33V, I36M, N37S, D60E, I62V, L63P; rev: D11Q, A15V, R17Q, P28Y, E32R, S61R, S67P, Q101*, S106P, D111A; tat: N7R, R57T, T58A, P59S, Q63P, S74L, R78Q, *87Q; vif: N22H, N48H, H73N, E78D, E117D, T130I, T155A, K158Q, H192Y; vpr: T19I, S28N, I70V, A93T; vpu: Q2P, P3A, R32K, R35G, K38R, -69V, -70E, -71M, -72G, 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D80N"}}},{"name":"AF484505","node_attrs":{"div":0.13349,"accession":"AF484505","clade_membership":{"value":"D"},"country":{"value":"UG"},"date":{"value":1998.0},"Strain_name":{"value":"98UG57131"},"LANL_subtype":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["T357A","A369G","A458G","A512G","A516T","G518A","G520C","A530G","A537C","A541T","C558G","A604C","G618T","G644A","G650A","A656G","C661A","G667T","A690G","C710T","A742G","C747A","A749G","C767T","T782A","G818A","G821A","T824C","A833G","A920G","A941G","A959G","G976T","A1059T","A1073G","G1077A","G1078A","A1079C","A1089G","C1118T","A1145G","C1211T","T1263A","C1492A","A1498G","T1501C","A1503G","T1511C","A1546G","T1556C","A1588G","C1598T","A1644G","A1664G","G1673A","C1676T","G1687A","A1691G","C1692A","C1706T","-1746T","-1747C","-1748C","C1749T","T1752-","C1753-","T1754-","A1776C","G1781A","C1782T","G1858A","A1867G","A1903C","A1926G","G1988A","C1996T","C2003T","G2027A","A2119G","A2194G","G2241A","A2340G","G2341A","C2393T","C2452T","G2459A","A2461G","T2467C","T2479A","C2584T","G2705A","A2743G","C2749T","A2752G","A2764G","T2770C","A2818G","A2839C","A2845C","G2878A","G2881A","A2919G","A2929C","A2983G","A2989G","G3004A","T3049C","T3052C","A3163G","A3173G","G3238A","T3262C","T3349C","C3376T","T3399C","A3403G","T3433A","T3469C","A3529G","T3550A","A3619C","A3622G","A3651G","A3684G","A3694C","A3805G","A3808C","T3853C","G3884A","T3976C","C4015T","T4075C","G4112A","G4145A","T4147C","G4148A","A4219G","A4243G","A4273G","A4512G","A4552G","A4643C","A4661G","G4677A","A4686C","C4692A","C4730T","A4766G","A4769C","G4779A","A4820C","C4871T","T4912C","A4937C","A5033T","A5049G","C5050A","C5203T","A5215G","A5225G","A5267G","A5272T","A5299G","G5359C","A5370T","A5385C","G5432A","G5433T","T5472C","G5482T","G5543A","C5548A","C5554G","A5564C","C5569T","T5626G","T5627G","G5652A","C5659A","A5708G","T5788C","A5790C","G5805A","T5871G","A5947G","A5955G","A5956T","G5957A","A5995G","C6010T","A6016C","C6026T","A6066C","G6073A","T6085C","T6100C","A6132G","T6154C","C6165A","T6169A","-6175C","-6179A","-6181T","C6183A","-6194G","-6195G","-6196T","-6198G","-6200A","-6201C","-6202C","-6203C","-6204C","-6205T","-6207C","-6209A","-6211C","-6212T","-6213C","-6214T","-6216C","-6217T","G6218A","-6220A","-6221G","-6222A","-6223C","-6224A","-6225T","-6226A","-6227G","-6228G","-6229A","A6234C","C6241T","G6263T","G6267A","T6285C","G6313A","A6318C","G6326A","T6328G","A6329G","A6333G","-6336C","G6392A","C6396A","G6403A","C6427T","A6450G","T6457C","G6458A","T6493C","A6525G","A6574C","C6599A","C6603A","A6604G","A6605G","T6607G","G6611A","T6613A","C6648T","G6664A","A6669C","C6683A","A6685G","T6690C","T6719C","A6723T","T6735A","A6754G","C6797G","G6821A","C6843A","A6844G","A6855G","A6856C","G6871A","G6948A","C6951G","A6952T","-6957T","-6958A","A6959G","A6962G","C6966A","-6969T","A6975G","-6977A","-6978C","A6980G","-6981G","A6989G","-6990A","T6991C","-6993G","-6994T","A7000-","A7001-","T7003-","C7020A","C7045T","G7055A","A7057C","C7078T","T7095C","A7096G","A7102C","T7159A","A7161T","A7164G","T7217C","C7250A","G7270A","G7288A","A7322G","C7373G","A7382T","G7384A","G7395A","T7403A","A7427T","T7488A","A7553C","T7555G","C7574A","A7575C","T7579A","C7584G","A7627C","G7628A","A7629C","T7642G","G7676A","C7699T","A7701C","T7708C","T7722A","A7731G","A7734G","G7735A","C7754A","A7764C","T7775C","T7784G","A7796T","A7858G","G8001A","A8002C","C8048T","C8065T","C8080A","C8103T","A8104G","A8143G","T8176C","T8182C","C8223T","T8256C","G8276A","C8286G","T8287G","A8297G","A8308G","A8314G","A8354G","T8414G","A8438T","C8440T","G8446A","G8447A","G8465-","T8495A","G8540A","A8573G","A8643G","G8666T","T8677C","A8717C","G8798A","T8800C","G8808A","A8827G","T8832C","T8845A","T8847G","G8848C","C8849T","T8887A","A8904C","A8906C","A8909G","A8931G","T8932C","G8968A","G9019T","T9029G","-9033G","A9034-","A9117G","T9122C"],"INT":["E11D","V37I","V113I","A124T","A125T","E246G"],"RT-p51":["R49K","K82R","E122K","E204K","E248D","E250D","K275R","Q278H","T360A","V435A"],"RT-p66":["R49K","K82R","E122K","E204K","E248D","E250D","K275R","Q278H","T360A","V435A","K530R"],"gp120":["N5Q","L6W","K34S","E35T","Q54H","N71T","K93R","T104N","-107V","T110N","T113N","-115S","-116T","-117P","-118T","-119I","-120S","-121T","-122K","-123D","-124I","-125G","-126M","K127T","V137L","R138K","V144A","Q155P","N158K","N159D","N160G","V180I","T181N","K199R","D202N","K224R","E240D","L249I","T250K","N251E","A253T","T265I","N272S","Q277K","I279T","L289F","Y290T","K309E","Q315E","G323N","N327-","K328N","T329K","K334S","S365-","W367-","T371V","-372W","-373I","-374D","-375G","-376K","-377L","-379S","-381G","-382V","-383N","P389Q","G401S","E412A","L414P","K416N","N433D","N434T","N435R","Q436L","L466I"],"gp41":["M7V","L24V","T27S","R31K","L34M","N42Y","I62N","I84L","H91T","T94S","D109T","G113E","D125N","N133T","T140N","E143G","K144R","Q151K","K154T","W161G","T165S","R233N","A267V","T307I","V318A","A325T","A328G","I332V"],"nef":["D24E","A33V","R35Q"],"p1":["I5V"],"p17":["L8I","K12E","M61L","G62A","I68L","Q69L","L75V","E90A","A95S","T109N","S111I","T119A"],"p2":["T8S"],"p24":["Q4R","L6M","R82M","T110S","G116N","S120G","S178T"],"p6":["S3N","P5T","-23S","P24S","S25-","K33Q"],"p7":["P9Q","K11R","I12T","I13V","N27S","K41R"],"pro":["E35D","K43R","L63P","V64I","H69Y","V77I"],"rev":["E10K","D11E","R17Q","I52L","S67F","L73F","L78I","N86D","S99G","S112P"],"tat":["R19N","V36Y","R56Q","P58T","Q60E","Q63P","H65Y"],"vif":["R19S","V31I","K34Q","Q36K","V65I","E78D","I109T","E117D","T155E"],"vpr":["V37M","S41G","T55A","T84V","R85P","T89S","S94R"],"vpu":["L7G","L18I","K34R"]},"labels":{"aa":"INT: E11D, V37I, V113I, A124T, A125T, E246G; RT-p51: R49K, K82R, E122K, E204K, E248D, E250D, K275R, Q278H, T360A, V435A; RT-p66: R49K, K82R, E122K, E204K, E248D, E250D, K275R, Q278H, T360A, V435A, K530R; gp120: N5Q, L6W, K34S, E35T, Q54H, N71T, K93R, T104N, -107V, T110N, T113N, -115S, -116T, -117P, -118T, -119I, -120S, -121T, -122K, -123D, -124I, -125G, -126M, K127T, V137L, R138K, V144A, Q155P, N158K, N159D, N160G, V180I, T181N, K199R, D202N, K224R, E240D, L249I, T250K, N251E, A253T, T265I, N272S, Q277K, I279T, L289F, Y290T, K309E, Q315E, G323N, N327-, K328N, T329K, K334S, S365-, W367-, T371V, -372W, -373I, -374D, -375G, -376K, -377L, -379S, -381G, -382V, -383N, P389Q, G401S, E412A, L414P, K416N, N433D, N434T, N435R, Q436L, L466I; gp41: M7V, L24V, T27S, R31K, L34M, N42Y, I62N, I84L, H91T, T94S, D109T, G113E, D125N, N133T, T140N, E143G, K144R, Q151K, K154T, W161G, T165S, R233N, A267V, T307I, V318A, A325T, A328G, I332V; nef: D24E, A33V, R35Q; p1: I5V; p17: L8I, K12E, M61L, G62A, I68L, Q69L, L75V, E90A, A95S, T109N, S111I, T119A; p2: T8S; p24: Q4R, L6M, R82M, T110S, G116N, S120G, S178T; p6: S3N, P5T, -23S, P24S, S25-, K33Q; p7: P9Q, K11R, I12T, I13V, N27S, K41R; pro: E35D, K43R, L63P, V64I, H69Y, V77I; rev: E10K, D11E, R17Q, I52L, S67F, L73F, L78I, N86D, S99G, S112P; tat: R19N, V36Y, R56Q, P58T, Q60E, Q63P, H65Y; vif: R19S, V31I, K34Q, Q36K, V65I, E78D, I109T, E117D, T155E; vpr: V37M, S41G, T55A, T84V, R85P, T89S, S94R; vpu: L7G, L18I, 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T119A, A120-; p2: A7L, A10-, A12S; p24: L6M, I15L, S16T, A31N, Q50T, L83T, G116A, A204S, S225G; p6: T8S, S14I, I21M, -23L, S25-, L35T, Y36C; p7: R10K, K11R, I12N; pro: M36I, K45R; rev: D7V, E10D, P28Y, Q36K, R80K, N86S, T91D, H100N, I102V, V109I, T114A, K115E, E116K; tat: N7S, P21A, K29Q, R53S, P58S, P59S, G61S, H65N, I69V, K71E, S74L, P81S, T82K; vif: K22N, Q36K, P47T, E78D, T155K, R167K, R184K, T188I, M189I; vpr: E17Q, S28A, V37T, H45Y, E48A, R85L, Q86L, S96P; vpu: V5Q, A11G, V13I, T24S, F27Y, C30Y, L33I, K34R, R35K, A50E, -69Q, H73-, V79I, 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L50M, D232E; RT-p51: K20R, T39D, D121C, P243S, E248D, T386I, E399D, V435L; RT-p66: K20R, T39D, D121C, P243S, E248D, T386I, E399D, V435L, V467I, L469I, T470A, K527N, N554S; gp120: S1R, T3I, N5E, L6G, I40V, I57V, E59K, K69E, I80V, D105N, -106A, -107K, N108F, T112A, -113N, -114S, -115T, -116G, -117N, -118T, -119T, -120E, -121S, -122P, -123L, -124T; gp41: Q32E, K77R, S107T, L108I, D109E, E110Y, N113E, E119Q, L130V, E137K, T140V, Q147K, Q151E, S163D, T165S, L193I, L210F, I264L, I293S, F304L, D305N, T306A, A310T, V326A, N331H, T334R, A343V; nef: I10L, I16V, I20M, R21K, E28D, A33V, E38D, H40Y, Q50H, Q104T, P150T, P176L; p17: E15D, R20H, S26R, K28R, F44Y, K58R, M61L, Q65E, I68V, E74G, V94I, T109N; p2: T8S, A10N, A11T; p24: I27V, A31G, S33N, H87Q, V91A, S120N, T210S; p6: I21T, A39T, K42R; rev: P28L, G56S, N82T, S103P, V104L, A108T, D111E; tat: N7K, R19Q, G62S, Q63E; vif: R19N, H27Y, Y30H, K34R, H73Q, T130A, Q136P, K141Q, T155S, K160R; vpr: V37P, F72Y, T89M; vpu: Q2P, 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120G","-121M","K140R","V144E","K150R","D157-","N158-","N159-","N160-","S162-","A172T","T181N","I243V","I244V","T292N","N293R","K309D","K319R","F325Y","K334Q","S336P","S365-","W367-","N369-","S370-","T371-","N378-","T380-","M398L","I414V","K416S","T427L","G431-","N433-","N434-","N435-","S436-","N437-","R462E","I463L"],"gp41":["I2V","S101D","L108I","D109E","E119Q","G129E","I135L","E137T","Q151K","K154T","S163D","N166R","V187I","L210F","I264L","V271L","E280K","T306A","V326F","I329V","N331H"],"nef":["G3N","S9-","I10-","V11-","G12-","R22-","T23-"],"p1":["K10S"],"p17":["R20Q","S26K","K28R","A67S","I68L","K76R","E90Q","A95T","A118-"],"p24":["A14S","I15L","Q50T","K199R","P207A","A208G"],"p6":["F15L","G16R","I21T","K33S","L38I","A39T","K42R"],"p7":["N5K","K7Q","P9Q","R10K","I12N","I24T","K34R"],"pro":["N37D","D60E","V77I","I93L"],"rev":["L18I","P28L","I55L","N82T","N84D","C89L","T91A","G98E","I102V","T114A"],"tat":["E2D","V36A","P58S","A64D","H65N","P68T"],"vif":["K22N","L39V","D45E","P47T","R93G","G101D","Q105H","I109L","T130F","N140Y","I154T","V166I","G182D","S186N"],"vpr":["D7N","L42I","T84L","T89L","A93S"],"vpu":["P3L","L4V","V5-","V13I","E56D","V65A","D78N","V79I"]},"labels":{"aa":"INT: L45M, G106A, V112I, V126L, N222H, I234V; RT-p51: T107S, Y121D, D123N, I142V, K173R, E177D, I200M, P272A, C282L, V293I, P294A, E312N, Y346H, M357R, C379S, Q394T, E399D, T400A, V435E; RT-p66: T107S, Y121D, D123N, I142V, K173R, E177D, I200M, P272A, C282L, V293I, P294A, E312N, Y346H, M357R, C379S, Q394T, E399D, T400A, V435E, L452-; gp120: S1R, V2A, L6G, K57N, N102D, N108-, T110-, -113A, -114N, -115N, -116V, -117T, -118R, -119I, -120G, -121M, K140R, V144E, K150R, D157-, N158-, N159-, N160-, S162-, A172T, T181N, I243V, I244V, T292N, N293R, K309D, K319R, F325Y, K334Q, S336P, S365-, W367-, N369-, S370-, T371-, N378-, T380-, M398L, I414V, K416S, T427L, G431-, N433-, N434-, N435-, S436-, N437-, R462E, I463L; gp41: I2V, S101D, L108I, D109E, E119Q, G129E, I135L, E137T, Q151K, K154T, S163D, N166R, V187I, L210F, I264L, V271L, E280K, T306A, V326F, I329V, N331H; nef: G3N, S9-, I10-, V11-, G12-, R22-, T23-; p1: K10S; p17: R20Q, S26K, K28R, A67S, I68L, K76R, E90Q, A95T, A118-; p24: A14S, I15L, Q50T, K199R, P207A, A208G; p6: F15L, G16R, I21T, K33S, L38I, A39T, K42R; p7: N5K, K7Q, P9Q, R10K, I12N, I24T, K34R; pro: N37D, D60E, V77I, I93L; rev: L18I, P28L, I55L, N82T, N84D, C89L, T91A, G98E, I102V, T114A; tat: E2D, V36A, P58S, A64D, H65N, P68T; vif: K22N, L39V, D45E, P47T, R93G, G101D, Q105H, I109L, T130F, N140Y, I154T, V166I, G182D, S186N; vpr: D7N, L42I, T84L, T89L, A93S; vpu: P3L, L4V, V5-, V13I, E56D, V65A, D78N, 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N81I"}}},{"name":"MN153485","node_attrs":{"div":0.12229,"accession":"MN153485","clade_membership":{"value":"F2"},"country":{"value":"CM"},"date":{"value":2008.0},"Strain_name":{"value":"08CMBDSH24"},"LANL_subtype":{"value":"F2"}},"branch_attrs":{"mutations":{"nuc":["A256-","A263G","-305C","T309-","G378T","C379T","A390G","A399C","A412G","A419G","C435A","A524G","C525T","T549A","A563G","A605G","G607A","A615G","G619A","C648G","A665G","A676G","G692A","A700G","T728C","G752A","G762A","A764G","G771A","C772A","T789C","G821A","T852A","A878T","A1002C","T1003A","C1008G","T1040C","A1070G","C1094T","C1169T","T1182C","C1187T","A1205G","C1211T","C1261G","T1262C","A1271T","G1278A","G1279A","C1292T","A1339G","A1361C","G1394A","C1406T","A1446C","C1447A","-1458A","-1459C","A1476G","G1495A","T1501C","C1514T","A1543G","C1571A","A1587C","A1643G","G1661A","G1673A","T1676C","A1701T","G1731C","A1733G","-1746A","-1747C","-1748T","T1752C","C1755T","T1785C","A1786T","T1787C","C1825T","G1841A","T1864G","A1918G","G1942A","A1982G","A2005G","G2027A","G2074A","A2154G","C2206A","A2212T","T2356C","G2392A","G2417A","T2494C","C2500A","A2545G","G2567A","T2607A","T2608C","A2627T","A2637G","C2638T","A2645G","G2647A","A2674G","G2683A","G2692A","C2756T","C2845T","T2863C","C2942A","G2947A","A2956G","T2968C","C2978A","A2992G","C3013T","G3016A","C3023T","A3061G","T3067C","A3080G","G3085A","T3097C","T3112C","C3140T","A3229G","G3230A","A3249G","C3318T","T3399C","G3438A","G3442A","G3467A","G3494A","A3529G","T3541C","A3562G","T3644A","A3684G","A3703G","T3742C","C3763T","G3775A","A3816G","T3844C","C3940T","T3946C","A3988G","A4064G","C4069G","C4258T","A4315G","G4354A","G4388T","C4396T","T4405C","T4412C","A4422G","T4455A","C4471T","A4539G","G4549A","A4558C","C4665T","T4676C","G4677C","T4678G","G4689A","A4693G","A4697G","T4701A","A4721C","C4754T","G4770T","A4782G","T4799G","G4871T","G4887A","C4914T","T4932G","G4963A","T4967G","A5015C","A5056G","G5069A","G5075T","A5085C","T5147C","T5182C","G5215A","C5221T","G5269A","A5299G","C5303T","A5308C","C5314T","T5357C","C5412A","A5448C","T5515C","A5594G","G5599A","G5610A","C5614A","T5618A","G5619T","C5620A","G5629A","T5630C","A5632G","G5635A","T5642A","C5651T","C5653A","T5657C","A5668G","T5670G","T5684C","A5703G","C5704T","T5705G","T5708C","A5717G","A5728C","G5729A","G5737C","A5787T","T5788G","T5789C","G5790A","C5792A","A5793G","C5795A","C5797T","T5799G","G5801C","G5802A","G5806C","G5808T","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","C5834A","A5842G","A5846T","C5851T","T5866A","A5881G","A5914T","A5918G","G5954A","A5957C","T5964C","T5968C","T5984C","A6009G","A6020G","G6028A","A6044T","T6109A","C6110G","G6167-","A6168-","T6169-","G6170-","T6171-","T6172-","A6182C","C6183T","T6184C","A6185T","T6190C","A6191G","T6193G","T6196C","T6199C","-6203C","-6204T","-6205G","-6209G","-6210A","G6211A","A6212C","T6213A","A6214G","-6215G","-6216A","-6217G","-6220G","A6222T","G6224-","G6225-","G6226-","G6227-","A6228-","A6229-","A6232G","A6251G","C6256T","G6262A","A6263G","T6264C","G6267T","G6277A","T6287C","T6289G","G6303A","T6322G","A6327C","G6333A","A6335G","A6340T","A6354G","T6361C","C6375A","T6403G","T6445C","A6462C","A6464G","G6481A","C6482A","A6489G","G6490A","A6505C","A6526G","G6532A","T6582A","A6639C","A6648C","A6654G","C6673T","T6676C","G6687A","-6697A","-6698G","-6699G","-6700T","-6701A","-6702T","C6708G","T6722C","T6724G","A6752C","A6771G","C6777A","T6780A","T6787G","G6788A","C6790T","A6800C","A6810G","A6822G","A6825T","T6827C","-6829T","-6833A","-6834A","T6838A","A6839T","A6840C","A6844C","C6849A","C6850A","T6860G","C6874T","G6894T","T6895G","A6907G","C6933G","A6934T","A6947C","-6948A","A6949C","-6953A","-6954T","-6955A","-6956G","-6957C","-6958T","-6962G","-6963A","-6964A","-6979A","-6980G","-6981G","-6982A","-6983A","A6986G","T6988C","-6990A","-6991T","-6999G","-7002C","-7005A","-7006C","A7032G","A7037T","C7045A","A7063G","G7065A","G7088A","C7089G","T7090C","A7095G","A7096G","A7113G","C7127T","C7134T","A7151G","A7152G","G7162C","T7165G","-7168G","-7170T","C7172A","A7183G","G7186A","G7231A","G7256A","A7265T","G7281C","A7297C","A7313G","A7322G","T7325C","G7366A","T7386C","A7420G","C7429T","A7532C","A7590G","T7591A","T7604G","G7631A","A7632C","C7642A","A7669G","G7790A","A7820T","G7831A","G7868A","A7883G","T7888A","G7915A","A7918G","G7942A","A7953G","G7962A","C7988A","A7989G","A7996C","G8019A","A8032G","C8033A","T8034G","C8037T","A8050C","C8065T","A8079T","C8080A","C8119G","-8120A","-8121G","-8122G","G8125A","G8126C","G8127T","A8128G","A8132G","G8133C","C8146A","C8147A","T8155C","C8156T","G8168C","C8169T","C8171A","C8220G","A8228G","G8276C","A8288T","C8291A","G8317A","T8348A","G8349A","G8350A","A8352C","T8366A","G8368A","T8369A","A8370T","T8374C","G8376A","G8377A","A8402G","T8414C","G8441T","T8451C","A8469G","G8488C","G8489A","C8500G","T8505A","G8507A","A8525C","A8564G","A8584T","C8676T","C8741T","T8745C","A8762C","G8787C","A8801G","C8828T","T8835C","G8876A","A8885G","A8893G","C8913T","G8914-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K14R, T97A, A205S, Q216R, F227Y, N255S; RT-p51: K20R, V108I, A158T, F171Y, I178L, Y181C, M184V, H221Y, L283I, L295M, I329V, G379S, K385R, A408V, V435A; RT-p66: K20R, V108I, A158T, F171Y, I178L, Y181C, M184V, H221Y, L283I, L295M, I329V, G379S, K385R, A408V, V435A, R448K, V458I, V467I, L517I, K530R; gp120: T22A, E34K, K35Q, V37A, Y44H, N52S, I56V, N64Y, D85E, Q86E, -107L, N108Y, T110E, -113T, -114L, -115T, -116E, -117Q, -118E, -119E, -120I, -121M, E122-, G124-, E125-, I126-, I133V, I137A, R138I, Y145Q, R150K, I153V, I156M, N158T, S159N, N161D, N167S, T174K, D183E, K203T, N204E, L210I, K212R, I243K, R262T, E265A, N267S, S278N, H280R, -282G, -283I, P285R, Y290Q, E294A, K300Q, Y302H, N306S, T308K, L309Q, N311K, D312N, K316Q, -319S, E320L, K322-, -327N, N328K, K329S, T332K, N334K, S336A, S347M, R351G, T365H, -367I, -368A, -370E, -372G, -373T, -374D, -375N, -377T, -379N, K393R, I395F, N397K, R404Q, A412S, K414R, N420S, T427I, N433G, -436D, L440I, V468I, T471S, Q476P, E481D; gp41: M4V, M7V, F8L, V28A, K77Q, N96R, S101A, E110T, D113E, R133S, I173L, M176I, A189T, I194V, N195K, D217G, G220E, Q229R, K231N, S239N, L244S, A245V, H259L, D272E, K276Q, G277A, L282I, A289L, Q290K, T306S, I309V, A325L, I329F, L330I; nef: G3N, K4Q, S9K, I10L, V11A, G12K, I20M, I43V, R49A, L55I, Q61H, Y81F, S149P, K184R, R191Y, R192-, H193-, I194-, A195-, R196-, E197-, R198-, H199-, P200-, E201-, F202-, Y203-, K204-, D205-; p17: A15L, I19V, K26R, L34I, S72T, V82I, R91K, I94V, R95K, Q105E, K114R, K122R; p2: T8Q, N9H, -12T; p24: V11M, A14N, S41T, I91H, P93A, A177G, E180D, G183N, K203R; p6: T8S, S14P, G16R, F17-, G18-, E19-, I21E, T22I, P23T, S24P, -26S, Y36P, P49L; p7: S4G, R10K, I12T, K26R, K41Q; pro: V15I, I62V, L63P, V77I; rev: E32K, A47E, T62E, T68P, L73F, L78I, Q91E, E94A, R95S, P100N, S103L, H107P, A108E; tat: N12K, K24N, Y47H, R78Q, T82A, E85K; vif: H27Y, V31R, A35T, K36R, G37R, F39I, E45D, D62S, S63K, I66V, R95S, G101S, H110Y, S116A, G126E, H127Q, K157R, L163F, R167Q; vpr: Y15H; vpu: M1I, L3I, 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E11D, K14R, S24N, V32I, L45Q, M50V, P119S, T218I; RT-p51: T35S, D123E, I135T, T139A, E177D, I195L, E207A, K211A, E297G, V317A, A322T, S379G, E404D; RT-p66: T35S, D123E, I135T, T139A, E177D, I195L, E207A, K211A, E297G, V317A, S322T, S379G, E404D, S491P, Q527R; gp120: A3E, D4N, V40I, N52S, L58M, E59G, N64T, K69E, -106C, K107V, N108R, -109N, -110K, -111N, -112T, -113T, -115S, -116D, -117L, -118R, -119E, -120D, -121P, Q123A, G124-, A125-, M133A, N138T, K141R, K142Q, H145Y, R150K, P155Q, N157D, N159R, N160T, N161Y, S162R, L165I, I166L, T172V, I173V, V180I, K204T, I243V, E262K, S263T, P271H, K277E, H280R, L281I, G307R, N311R, K312D, E315D, T330-, N334Q, S335P, I347M, -367G, -370D, -371T, -372I, -373S, -374N, -382G, -383T, -384D, T385P, T387I, A412K, N414S, G431E, N432G, N433S, N435S, D436E, S437N, D446N, R448K, E464K, V468I, K479T, K482R; gp41: M7W, V28A, L91V, N96R, S102T, K106R, E110N, D113N, M115L, M118I, G125D, Q126R, Y127H, Q137D, N140K, M176I, G180S, V187A, S205P, A267V, L330F; nef: K4M, A15K, R22Q, A49V, A50T, E63D, V85I, I101V, Y120F, Y135F, D149E, E176D, K184Q, S188K, H199C, E201D, Q204R; p17: L8F, E17D, G24R, K28H, S72T, V82I, I104M, A115T, A118V, G123S, N124-, S125-, S126-; p2: N9R, A12T, V13I; p24: S149C, A194S, S225G; p6: -26R, K27-, D32S, A39D, K42R; p7: R10K, R41K; pro: I15V, K45R, L63T, I93L; rev: D7E, A15T, P31S, D61G, I102V; tat: I39V, Q60K, G61D, I67N, P68S, P77L; vif: M29I, K36Q, F39V, Y44F, S46N, I51V, E61G, S95N, A123V, R128K, T159R, N186Y; vpr: L22I, T49S, H77Q, S93P; vpu: D3N, L4F, L5I, V7I, A8V, I9T, F12Y, L16I, L33V, K44E, R47I, M71V"}}},{"name":"AF076998","node_attrs":{"div":0.10416,"accession":"AF076998","clade_membership":{"value":"CRF05_DF"},"country":{"value":"BE"},"date":{"value":1993.0},"Strain_name":{"value":"VI961"},"LANL_subtype":{"value":"CRF05_DF"}},"branch_attrs":{"mutations":{"nuc":["T200C","T305C","T308G","T467C","C471A","G607A","A673G","A674T","G677A","G703A","A711G","A715C","A730T","G821A","T852A","C893T","T978G","T988C","G989A","T992G","G1019A","G1077A","T1262C","G1271T","G1388A","A1449G","A1455C","-1460A","A1461G","G1498A","A1567G","C1615T","A1620G","A1644G","C1651T","G1664A","T1754G","A1781G","C1782A","T1783A","C1811T","T1873C","C1903A","A1906G","T1954C","T1996C","G2005T","A2012G","A2215C","A2304G","G2321A","A2329G","G2343A","G2456C","A2459G","T2464C","G2509A","A2519T","A2629G","G2693A","A2713G","A2755G","A2818G","G2837A","A2884G","G2951A","G3171A","G3398A","A3400G","A3490G","A3511C","A3571G","C3653A","A3671G","G3775A","A3781G","G3825A","T3962C","T4039C","C4181A","T4234G","A4370G","G4388T","T4477G","T4655C","G4689A","G4696C","G4766A","A4814G","G4829A","G4878A","A5036G","A5122G","A5143G","A5159G","C5160T","G5226A","T5275C","C5280T","T5286C","T5313C","T5391C","T5452C","C5536T","A5576T","T5688C","A5689T","A5699G","G5839A","A6020T","T6024C","C6122T","-6170G","-6174C","T6187C","G6188A","C6190T","A6192G","T6193C","-6195A","C6196G","C6201T","C6205T","-6207C","C6222A","T6242A","G6277T","C6278A","A6282G","C6317T","A6327G","T6331C","A6333G","T6334A","C6337A","A6338G","G6339A","-6340A","C6396G","T6457A","A6465G","G6550A","C6562T","C6603T","A6618C","A6693C","G6725A","T6733G","A6809G","T6815C","A6819G","A6820G","T6827A","C6829A","-6830G","-6831G","-6833C","A6848G","T6863G","-6947G","-6948T","-6972G","-6974A","-6975C","-6976C","-6977C","-6978A","-6979A","-7002A","C7096T","G7152T","A7155C","C7156T","-7164C","-7165A","A7289C","A7313G","T7325C","C7328A","A7375G","T7444C","A7505C","A7533G","G7534A","T7555C","C7642A","G7658C","A7679C","C7742A","A7747C","G7790A","A7791G","C7801T","G7868A","A7880G","T7921C","C7938G","C7960A","A8005C","A8019C","C8026G","G8030A","A8188G","G8365A","T8369G","A8409G","C8411A","C8412G","C8413G","T8414A","C8415G","C8499G","C8552T","A8584T","T8585C","G8588A","C8590G","G8595T","A8636T","G8664A","T8666G","C8688A","T8747C","C8828A","A8847C","G8848A","C8873T","A8874G","A8887G","A8904T","A8905C","G8917A","-8971T","C8975T","G9015A","G9033-","T9041C"],"INT":["S17N"],"RT-p51":["E40D","K70R","D76N","R83K","D121H","K122E","I142F","I178M","A200T","D248N","A286T","D335E","S359N","V435M"],"RT-p66":["E40D","K70R","D76N","R83K","D121H","K122E","I142F","I178M","A200T","D248N","A286T","S322A","D335E","S359N","V435M","Q520K","I526V"],"gp120":["I56L","V57A","E78A","P90S","-106L","N108E","S114-","S130T","M133I","N138K","K141N","K143R","P155S","N158S","N159S","N160R","N161K","S162E","S181C","N201K","K204R","N241S","S250L","N255T","H280P","A291T","-318K","-319E","K322R","-323A","I332V","S337A","S365V","N369-","N433I","N434T","S437T","K479Q"],"gp41":["L4V","M7L","F8L","L9I","I24M","K77R","N96S","Y108Q","D113E","E119Q","Q147K","E148D","D163S","A189T","I193V","A212G","N239T","F241L","A243T"],"nef":["S8N","S9R","E28G","G29A","P53A","Y81F","A83G","V85L","E98D","D108K","H116N","N162K","S169H","R178G","K182R","R192K","H199R"],"p1":["I5V","P7L"],"p17":["L46I","S62A","R91K","K113S","G123K","S126G","Q127P","Y132F"],"p2":["N9G","T11P"],"p24":["S41T","L83V","V86A","H87Q","M96I","A116T","E180D"],"p6":["L35K"],"p7":["R11K","K34R","T50I","R52G"],"pro":["L5F","D35E","I36M","Q69H","I72V"],"rev":["I21F","S30R","S53R","E57D","L60V","T114A"],"tat":["Y26H","T54S","P77A","P84Q"],"vif":["A35T","G37A","V98I","T159I","K179R","N186C","H192Y"],"vpr":["T19V","G41D","A59V","I61T","I70T","S96P"],"vpu":["V10A","I28L","K31R","D78N"]},"labels":{"aa":"INT: S17N; RT-p51: E40D, K70R, D76N, R83K, D121H, K122E, I142F, I178M, A200T, D248N, A286T, D335E, S359N, V435M; RT-p66: E40D, K70R, D76N, R83K, D121H, K122E, I142F, I178M, A200T, D248N, A286T, S322A, D335E, S359N, V435M, Q520K, I526V; gp120: I56L, V57A, E78A, P90S, -106L, N108E, S114-, S130T, M133I, N138K, K141N, K143R, P155S, N158S, N159S, N160R, N161K, S162E, S181C, N201K, K204R, N241S, S250L, N255T, H280P, A291T, -318K, -319E, K322R, -323A, I332V, S337A, S365V, N369-, N433I, N434T, S437T, K479Q; gp41: L4V, M7L, F8L, L9I, I24M, K77R, N96S, Y108Q, D113E, E119Q, Q147K, E148D, D163S, A189T, I193V, A212G, N239T, F241L, A243T; nef: S8N, S9R, E28G, G29A, P53A, Y81F, A83G, V85L, E98D, D108K, H116N, N162K, S169H, R178G, K182R, R192K, H199R; p1: I5V, P7L; p17: L46I, S62A, R91K, K113S, G123K, S126G, Q127P, Y132F; p2: N9G, T11P; p24: S41T, L83V, V86A, H87Q, M96I, A116T, E180D; p6: L35K; p7: R11K, K34R, T50I, R52G; pro: L5F, D35E, I36M, Q69H, I72V; rev: I21F, S30R, S53R, E57D, L60V, T114A; tat: Y26H, T54S, P77A, P84Q; vif: A35T, G37A, V98I, T159I, K179R, N186C, H192Y; vpr: T19V, G41D, A59V, I61T, I70T, S96P; vpu: V10A, I28L, K31R, D78N"}}}]}]},{"name":"NODE_0000078","node_attrs":{"div":0.0443,"clade_membership":{"value":"other"}},"branch_attrs":{"mutations":{"nuc":["A508G","G607A","G977A","A1022G","A1046T","G1077C","C1078A","A1109G","A1133C","T1244C","A1412G","C1478T","G1508A","C1514T","C1517T","G1968A","C1979A","A1981C","A2005C","A2023G","T2206A","A2362G","A2498G","A2626C","A2956G","C3013T","A3099G","A3217G","C3223T","C3225T","A3259G","A3276T","A3283G","A3292T","T3355C","T3368C","C3376T","T3399C","T3412C","A3755G","G3825A","C4021A","T4110C","G5086A","G5236A","T5382G","A5444C","C6160T","A6478G","C6548T","A6691-","C6721T","T6733A","A6748C","A6809-","T6849A","-7006C","G7056A","A7183G","G7190A","G7197A","C7692A","G7765A","T8883C","A8885G"],"INT":["S17N"],"RT-p51":["I135V","E177D","D335G","E399D","V435A"],"RT-p66":["I135V","E177D","D335G","T377L","Q394L","E399D","V435A","S554A"],"gp120":["I56V","E78T","D105N","K142Q","-323S","N328-","I332K","T345M","S365D","I396V","D446N","R448K"],"gp41":["Y108Q","T130E","L209H"],"nef":["S188R"],"p17":["K58R","R91K"],"p24":["A116Q"],"pro":["R57K","Q61N"],"tat":["N23T"],"vif":["R167K"],"vpr":["S93A"],"vpu":["V7I"]},"labels":{"aa":"INT: S17N; RT-p51: I135V, E177D, D335G, E399D, V435A; RT-p66: I135V, E177D, D335G, T377L, Q394L, E399D, V435A, S554A; gp120: I56V, E78T, D105N, K142Q, -323S, N328-, I332K, T345M, S365D, I396V, D446N, R448K; gp41: Y108Q, T130E, L209H; nef: S188R; p17: K58R, R91K; p24: A116Q; pro: R57K, Q61N; tat: N23T; vif: R167K; vpr: S93A; vpu: V7I"}},"children":[{"name":"NODE_0000079","node_attrs":{"div":0.06149,"clade_membership":{"value":"other"}},"branch_attrs":{"mutations":{"nuc":["G10A","C23T","G278A","A304-","A404G","C426A","A428G","A474G","T486C","A507C","C510A","A557G","G595A","A609G","A620G","T641G","A645C","A669C","A689G","C700A","A705-","A706-","C707-","A708-","C710-","G712-","A715-","C722T","G740A","G755A","C773T","A806G","A809G","C827T","A869G","C875T","C902T","A1277G","A1278G","A1279G","-1452A","G1476A","A1670C","G1673A","A2038G","A2131G","G2224A","A2311G","G2693A","G3431T","T3445C","T3449A","T3450A","A3511C","A3524G","G3770A","A3901G","T4024C","A4084G","T4147C","A4246G","A4255G","G4388T","T4444C","G4695A","A4717T","T4799G","C4820T","T4827C","A4860G","A4865G","C4871G","G4878A","A4904G","T4907C","C4911A","G4913A","T4976C","G4986A","T4988C","A5049G","A5051T","A5057G","T5062C","A5069G","T5084C","C5095T","G5099A","T5102C","A5121G","A5269G","A5290G","T5293A","C5294T","T5314C","C5371T","C5384T","C5398T","G5403T","T5424C","A5432C","G5433A","G5437C","A5461C","A5462G","C5479T","A5481C","G5482T","T5483G","T5484G","T5492C","A5499G","A5544C","C5567T","T5568A","C5614G","G5626A","C5630G","A5631G","-5806A","A6050G","G6086A","A6168-","-6204G","A6279T","A6336G","A6801G","A6810C","A6820G","A7025C","A7152G","-7164C","A7977G","A8032T","A8076G","C8095A","C8120A","T8121G","T8122G","C8123G","T8124G","G8126C","G8127T","A8128G","C8129A","C8131G","T8159G","T8169C","A8288G","C8294A","A8486T","G8487A","C8488G","C8640T","G8882A","A8909G","A8952C","-8971A","G9007A","A9009-","T9014-","T9019A"],"INT":["T124A","A205S"],"RT-p51":["A200T","Q394L"],"RT-p66":["A200T","A446S","L452K","T477A","V559I"],"gp120":["N66D","Q142L","Q316R","N369-","R472K"],"gp41":["D129N","F206L","E225G","H258R","E272D","G275L","W286G","I329V","H331N"],"nef":["A49R","K204Q"],"p17":["L31M","N47D","Q59K","C87Y","I92V","I104L","K112Q","T122K","N124-","S125-","S126-","Q127-"],"p24":["N183G"],"rev":["T62S","T91Q","S92G","G93T","T94E","Q95E","V104G"],"tat":["P3L","E9D","K19T","A21P","K29R","Q35Y","V36W","I39T"],"vif":["G37R","Y44F","R92G","S95R","V98I","L109I","V129I","T155A","T170V","K179E"],"vpr":["A89V"],"vpu":["V10A","-71M"]},"labels":{"aa":"INT: 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-71M"}},"children":[{"name":"NODE_0000080","node_attrs":{"div":0.06826,"clade_membership":{"value":"other"}},"branch_attrs":{"mutations":{"nuc":["A595T","A810G","C897T","G998A","-1455A","-1457T","A1461G","G1687A","A1691G","T3492C","T3544G","C3674A","G3766A","A3802G","A3805G","C3940T","A4021G","A4025C","G4060A","G4131C","T4207C","G4262A","G4354A","A4407G","C4428T","A4737G","T4793C","G4969A","C5478T","G5631C","G5861-","C5862-","A5863-","C6004T","C6010T","A6130G","-6207C","-6212A","-6214G","-6215G","-6216A","-6217A","A6275C","T6343C","T6688-","C6692-","A6714G","T6793A","C6800A","G6814A","C6824T","-7001A","-7005A","A7060G","G7160A","C7170T","A7691G","G7947A","C8494A","G8531A","T8789C"],"INT":["I84L","K211R","T218I"],"RT-p66":["V466A","H483Q"],"gp120":["A3-","D4E","K141Q","H280-","Q287R","K329-","-436N","T439I"],"gp41":["G215E"],"nef":["T51N"],"p17":["Y87F"],"p2":["-12V"],"p24":["I27V"],"p6":["S3N"],"tat":["L74I","D80N"],"vif":["I51V","R128K"],"vpr":["G41S"]},"labels":{"aa":"INT: I84L, 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R20K, V72I, I101L, T119A, K156N, R211K, I218T; RT-p51: D6N, M41L, E44D, V60I, D67N, K70R, L74V, L100I, K103N, V118I, C162Y, A173T, D177N, M184V, E203K, H208Y, L210W, T215Y, D218E, K219E, L228H, Q242H, N348I, L377T, D399E; RT-p66: D6N, M41L, E44D, V60I, D67N, K70R, L74V, L100I, K103N, V118I, C162Y, A173T, D177N, M184V, E203K, H208Y, L210W, T215Y, D218E, K219E, L228H, Q242H, N348I, L377T, D399E, N447S, V467I, S468T, E529D, V531I; gp120: T21N, A32S, V56E, G59V, N102D, T104I, N105G, A106V, -109T, -110T, -111N, -112A, -114T, E122L, P123N, T135A, K143Q, Y149S, L151F, I153L, I156L, N159S, N160S, S162H, N167H, N169D, D183E, E239K, I243V, S278G, -280R, Y290L, G293E, D294K, K312N, T313A, L314I, E315K, S323V, -326P, -329K, K332N, N334T, I343V, D365N, -378N, -379I, -381Q, -382S, -383K, T385I, I395V, M398L, A412E, N414I, N420S, N433G, K472G; gp41: A14T, I24M, V69L, N96A, D109K, D113E, N129K, R133N, E136A, N160S, L206F, G221E, R231K, D232G, V235I, A243S, R258H, L284F, A289T, Q290L, S293I, E313G, 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N80D"}}},{"name":"HM026458","node_attrs":{"div":0.11573,"accession":"HM026458","clade_membership":{"value":"CRF46_BF1"},"country":{"value":"BR"},"date":{"value":2007.0},"Strain_name":{"value":"07BR_FPS783"},"LANL_subtype":{"value":"CRF46_BF1"}},"branch_attrs":{"mutations":{"nuc":["A101T","A161C","T200G","G317A","G474A","C477T","T479C","A510C","G519A","C520A","C525T","G542A","G562A","A569G","A576G","C662T","C691A","A697G","G743A","C767T","G771C","T978G","A998G","T1046A","T1182C","A1193G","T1296C","C1316T","G1346A","G1404A","C1456A","C1598T","A1673G","A1772G","C1775G","C1826T","A2122C","C2211A","G2407A","C2527T","A2592G","G2602T","A2693G","C2701T","A2715C","A2794G","A2818G","C2848T","T3045C","C3067A","A3088G","G3250A","T3262C","G3264A","T3299A","G3300C","G3307A","C3346A","A3447G","C3492T","T3495C","G3524T","A3760G","A3766G","T3856C","G3891A","A3931T","G3952A","G3997A","C4025A","A4063C","C4079T","A4178G","C4181A","G4183T","C4204T","T4240C","G4252A","G4263A","A4285G","G4353A","A4354C","C4357T","A4577C","G4583C","T4585C","C4674T","T4717A","T4718C","G4737A","A4804T","T4910C","C4965G","A4969G","G4971A","A4993C","A5007C","T5018C","A5159G","C5160T","A5246G","A5285G","A5372G","C5383A","T5398C","G5427A","G5463A","T5479C","C5481A","C5487T","T5515C","T5567A","A5568C","G5575A","G5614T","T5616C","G5619A","T5620G","A5622G","G5623A","A5626-","T5627-","A5629G","G5630C","C5631T","A5632-","T5648C","C5678T","T5684C","C5704T","G5712A","A5842G","A5914C","T5923C","C5929T","A5958G","A5965C","C5989T","A6008G","A6030G","T6091C","C6115T","C6116T","-6167A","-6168A","-6171C","-6179A","-6180A","C6183G","T6184A","A6186C","-6195G","G6204-","A6206-","C6207-","-6213T","G6215T","A6217C","C6233A","A6261T","G6263A","G6267A","T6279C","T6289A","A6316G","T6328G","A6332G","T6334G","A6340C","T6361C","A6368T","A6394C","A6406G","A6438T","C6496T","G6575A","T6582C","A6589G","A6599T","A6635G","T6641C","C6647T","A6648G","C6667T","-6693C","-6697G","C6777A","A6778G","C6779G","A6781C","A6789C","T6794C","A6798G","G6801A","T6815C","A6819G","G6821T","-6833T","A6836G","A6840G","A6848C","A6944G","-6954G","-6955A","-6956A","-6957T","-6958C","-6959A","-6960A","-6961T","-6962A","-6963T","-6964T","-6985C","-6990A","-6995G","-6997C","-6998A","-6999A","-7000C","-7002G","C7008A","T7009C","G7026A","G7063A","A7085G","A7095G","T7105C","G7152A","A7160G","-7162A","T7170C","C7204T","A7289C","G7307A","A7315G","A7372G","A7373G","A7420G","A7508G","G7552A","C7561T","A7620G","A7688G","A7689G","G7709C","A7714G","G7717A","G7720A","A7733C","C7742A","A7747T","T7751C","G7759T","G7769A","C7801A","G7831A","A7921G","A7936G","G7997A","A8029C","G8128A","G8137T","A8180G","A8184G","A8188G","A8233G","G8245A","C8411T","G8432A","T8451C","C8460A","G8462A","T8486C","C8499T","C8514T","G8516A","T8595G","G8666C","C8676T","G8880A","T8881C","A8893G","C8907T","T8913C","A8917G","A8922C","G8936A","G8954A","C8967T","G8970A","-9075T","T9084C","T9180A"],"INT":["S39N","L84I","E96D","I135V","Q136N","R163K","G193D","I268L","D270H"],"RT-p51":["A39E","K166R","E169D","T200A","E207A","V317A","D324E","R390K","W402T"],"RT-p66":["A39E","K166R","E169D","T200A","E207A","V317A","D324E","R390K","W402T","K451R","A466V","V467A","A477S"],"gp120":["K35R","N52D","-107N","N108T","-109N","-110R","-111T","-112T","-114S","-116N","Q127K","E136V","V137I","R138K","L142P","H145Q","N157-","N159K","N161E","T172S","Y195F","D241N","I243T","I249F","N261D","S263P","Q265W","-280P","I281M","Y290F","T308E","Q309D","K312T","E315R","R316K","K322R","-326S","N327D","-328R","K332Q","N364D","D365-","-379N","-381D","-382N","-383S","T385N","R391Q","I411V","N414S","N436E","I439T","K472R","K479Q"],"gp41":["V2I","L4M","I24V","K106R","D109E","N129G","R133K","E136Q","N140S","K144Q","Q147K","E148D","L152F","A156T","N166K","M176I","D232N","R236G","L242F","S293G","Q294R"],"nef":["R22Q","P53S","L85V","E108D","V180T","K184R","F191L","H192R","M194L"],"p17":["D47N","P48S","K59Q","A62K","R76K","T81A","A119E","D121G"],"p2":["A11N","V13-"],"p24":["A14P","L83V"],"p6":["D32E"],"rev":["Y18T","K30E","R50K","S61R","E94K","V97L","E111G","T114A"],"tat":["L3I","Y35Q","Y47H","I64N","D67N","Q76R"],"vif":["H30Y","F44Y","V51I","H73L","H127D","K128R","V129I","Q136P","K141Q","H192Y"],"vpr":["T19V","S41G","N48D","I61V","A93D"],"vpu":["D3Y","L5V","A6I","I7-","I9-","A10-","V14A","T24I","V26A","I79V"]},"labels":{"aa":"INT: S39N, L84I, E96D, I135V, Q136N, R163K, G193D, I268L, D270H; RT-p51: A39E, K166R, E169D, T200A, E207A, V317A, D324E, R390K, W402T; RT-p66: A39E, K166R, E169D, T200A, E207A, V317A, D324E, R390K, W402T, K451R, A466V, V467A, A477S; gp120: K35R, N52D, -107N, N108T, -109N, -110R, -111T, -112T, -114S, -116N, Q127K, E136V, V137I, R138K, L142P, H145Q, N157-, N159K, N161E, T172S, Y195F, D241N, I243T, I249F, N261D, S263P, Q265W, -280P, I281M, Y290F, T308E, Q309D, K312T, E315R, R316K, K322R, -326S, N327D, -328R, K332Q, N364D, D365-, -379N, -381D, -382N, -383S, T385N, R391Q, I411V, N414S, N436E, I439T, K472R, K479Q; gp41: V2I, L4M, I24V, K106R, D109E, N129G, R133K, E136Q, N140S, K144Q, Q147K, E148D, L152F, A156T, N166K, M176I, D232N, R236G, L242F, S293G, Q294R; nef: R22Q, P53S, L85V, E108D, V180T, K184R, F191L, H192R, M194L; p17: D47N, P48S, K59Q, A62K, R76K, T81A, A119E, D121G; p2: A11N, V13-; p24: A14P, L83V; p6: D32E; rev: Y18T, K30E, R50K, S61R, E94K, V97L, E111G, T114A; tat: L3I, Y35Q, Y47H, I64N, D67N, Q76R; vif: H30Y, F44Y, V51I, H73L, H127D, K128R, V129I, Q136P, K141Q, H192Y; vpr: T19V, S41G, N48D, I61V, A93D; vpu: D3Y, L5V, A6I, I7-, I9-, A10-, V14A, T24I, V26A, I79V"}}}]},{"name":"CRF46_BF1_NODE_0000002","node_attrs":{"div":0.08199999999999999,"clade_membership":{"value":"CRF46_BF1"}},"branch_attrs":{"mutations":{"nuc":["A3058G","C5544A","-6205C"],"gp120":["-107K","H324Y","T387I"],"gp41":["V69I"]},"labels":{"aa":"gp120: -107K, H324Y, T387I; gp41: 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 E10D, N17S, S39A, V72I, G163K; RT-p51: E29K, K104R, K122Q, D177E, E207N, D248N, D250E, K275R, I329L, A376S, T386I, R390K; RT-p66: E29K, K104R, K122Q, D177E, E207N, D248N, D250E, K275R, I329L, A376S, T386I, R390K, A477S, K512Q, E516D, Q524L, S534A, I559V; gp120: N1S, A2-, -3T, N5K, K18R, E34D, V37A, V56I, L58M, N71P, N102E, T104N, N105A, -109D, -110T, -111Q, -112K, -117G, -118I, -119L, -120R, -121E, P123Q, N157G, N158D, N161S, S162T, T170S, S250T, T255I, -280Q, T308A, -319A, K322N, -326I, -328E, -366T, -376G, -377S, -378N, -379N, -380E, D384-, I395M, V396I, I411V, N432P, N433G, N435K, N436T, T437Q, E438-, N446D, V468I, K479T; gp41: M7L, S35A, S107T, E110Q, D113Q, I124V, N126S, E136T, N140S, E148D, L152F, V187I, R214E, E220R, R236G, L242F, R276K, Q290W, S293G, V318I; nef: K4I, K7R, S9R, I16V, V33A, S45N, A50D, L55V, E63D, I101T, Q107H, D149N, K155R, M168I, D177E, R188S, M194R, E201D, Y202F, D205N; p1: H9N; p17: P48S, S54P, P66S, A83V; p2: A7V, A11N, V13L; p24: A65P, D71G, T72G, D81Y, L83F, P85T, V230I; p6: G16E, F17I, G18R, P23-, S24P, P25S, -26Q; p7: K26R; pro: K20R, N61D; rev: E11D, K32R, R38Q, I52V, S61R, A108V, E111G; tat: Y35Q, T39V, R57G, T58P, G79R, K85E; vif: H30Y, F44Y, S46T, E60D, E61K, A62D, K63T, I98V, G101D, E117D, H127Q, I154V; vpr: E6G, H77Q, S94G; vpu: I9L, V26A, I28L, R31K, E44K, D78N"}}},{"name":"CRF46_BF1_NODE_0000003","node_attrs":{"div":0.08745999999999998,"clade_membership":{"value":"CRF46_BF1"}},"branch_attrs":{"mutations":{"nuc":["T595A","C698A","G2602T","A2818G","A4130C","A4262G","A5299G","-6203A","A6330G","A6807G","C6810G","A6811C","T6815G","A6817T","G6820A","C6822T","T6823C","A6825C","T6826A","C6829T","-6830C","-6831C","-6832C","G6935A","-6988T","-6989G","T7322A","A7426G","T7433C","G7627T","A7782G","A7943C","G7995A","T9084A"],"INT":["T119P"],"gp120":["A106L","N108E","N159S","S162N","N327-","-329K"],"gp41":["Q108H","N160S","R231K"],"p17":["F87Y","D121E"],"p2":["V12T"],"p24":["A14S"],"rev":["K32T"],"tat":["Q78H"]},"labels":{"aa":"INT: 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W57S, L58V, V85F, N126T, V153I, R188H, I194L, Q204K; p17: T53S, Y79F, F87Y, Q90K, V94I, K95Q, G123E; p2: V7A, N9H, A11-, V12T, -13V; p24: L83V, V191I, A194S, T210S, G225S; p6: N3S, P5L, -26Q, K31R, P49Q, Q52K; p7: Q9P, I12N, A54V; pro: L10I, T12K, L19Q, K20T, L24I, D30N, L33F, D35N, M46I, I54V, K57R, L63P, A71V, V82A, N88D; rev: E10T, Q36K, Q74L, L78I, E79D, R80Q, H82R, N84D, S86N, G98E, N99S, Q101P; tat: K24S, R29K, F32Y, W36R, T39I, R56H, Q60K, S61G, P68S, T82K; vif: N19S, T20K, F39G, K63N, R93T, I154L, A155G; vpr: L68I; vpu: V14L, R41N, E44K, E58D, L73P, V74I, I75V, P76F, N80D"}}}]},{"name":"CRF38_BF1_NODE_0000002","node_attrs":{"div":0.10174000000000001,"clade_membership":{"value":"CRF38_BF1"}},"branch_attrs":{"mutations":{"nuc":["T200C","G424A","A607G","G771C","A968C","A3543G","A4764C","T5451C","T5492C","-5812C","-5813T","-5814T","-5815G","-5816T","-5817T","-5818A","-5819T","T6155C","C6165-","-6201C","G6303A","T6337C","A7366G","G7630T","G8329A","A8887T"],"RT-p51":["A286T"],"gp120":["T104S","R150K","H324Y","-369N"],"gp41":["H258R"],"nef":["R49K"],"p17":["R30K"],"p24":["A14P","E79D"],"vif":["K60Q"]},"labels":{"aa":"RT-p51: A286T; gp120: T104S, R150K, H324Y, -369N; gp41: H258R; nef: R49K; p17: R30K; p24: A14P, E79D; vif: 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1":["N9H"],"p17":["T53S","A54S","I61M","G62A","Q63H","K91R","E93D","D102E","N109K"],"p2":["E2A","T10S"],"p24":["I153L","R154K","T171V","L172V","A177S","T200S","A217S"],"p6":["N3S","T8S","S24P","-26Q","L35M"],"p7":["S4G","Q9P","I12T"],"pro":["V15I","L63C","G68D","A71V","V77I","I93L"],"rev":["D7G","V16I","Y28F","I55L","Q101P","I102V","S106P","E111D"],"tat":["N7K","D9E","T23N","Y47H","S62N","I74V"],"vif":["F39C","R41K","A62D","R93S","G101D","K157Q","E179K"],"vpr":["G6E","Y15H","N28A","I61T","I63T","I84H"],"vpu":["D3N","A6V","A10V","K31R","L33I","M71V","G72Q"]},"labels":{"aa":"INT: 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V33A, E38D, A50D, L55V, F139M, E151D, M173A, R178K, K182V, K184R, D205N; p1: N9H; p17: T53S, A54S, I61M, G62A, Q63H, K91R, E93D, D102E, N109K; p2: E2A, T10S; p24: I153L, R154K, T171V, L172V, A177S, T200S, A217S; p6: N3S, T8S, S24P, -26Q, L35M; p7: S4G, Q9P, I12T; pro: V15I, L63C, G68D, A71V, V77I, I93L; rev: D7G, V16I, Y28F, I55L, Q101P, I102V, S106P, E111D; tat: N7K, D9E, T23N, Y47H, S62N, I74V; vif: F39C, R41K, A62D, R93S, G101D, K157Q, E179K; vpr: G6E, Y15H, N28A, I61T, I63T, I84H; vpu: D3N, A6V, A10V, K31R, L33I, M71V, 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L45V, V54I, V72I, E96D, P119T, G163R, D207E, R211K, I218T; RT-p51: K122E, I135M, D250E, T286A, T386I, R390K, Y405H; RT-p66: K122E, I135M, D250E, T286A, T386I, R390K, Y405H, K452Q, E527N, K550R; gp120: V56Q, V57F, E59K, I80V, -106A, -107T, N108D, -109A, -110T, -111T, -112T, -113A, -114S, -115S, -116S, -117L, -118K, -119E, Q142R, K143T, H145N, D159S, N160I, S162N, D202N, K203E, K204T, T216V, N234-; gp41: M4L, V72L, L81F, I84L, K106R, Q108L, E109D, E110Y, D113T, N160T, N166K, P210F, F255Y, R259L, I266S, E272G, L273H, R277W, A281V, Y291-, W292-, S293-, Q294-, E295-, L296-, K297-, N298-, S299-, A300-, I301-, S302-, L303-, L304-, N305-, T306-; nef: S8G, I10K, V11A, E15V, R19K, V33A, R39K, E63D, Y81F, V85F, H89F, L139F, V153I, N157T, S169N, R188G, L191R, I194L, R198K; p17: R76T, A83V, Q90K, E99D; p2: T12N; p24: V11M, S14P, S16T, A31T, S44A, T58S, R154K; p6: -19E, E20Q, K21T, I22T, T23P, P24-, H25-, P26-; p7: V13I, K20R; pro: N37D, R43K; rev: S8D, D9E, E11V, F21Y, A54E, L60F, D84E, Q95L, T108A; tat: L3P, Y35Q, Q54R, R57S, D61N, S62R, S68P, P75S; vif: F39S, R41K, R47S, A62D, V85A, R93S, I109V, A155G, K157R, K160R, K167S, P177H; vpr: H77N; vpu: L4E, A5V, A15V, H74D, P76L, 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N47Q, E63D, Y81F, G83E, R105K, Q107R, Y120I, E151D, A156D, N157T, N162T, K184E, R188K, R198K; p17: Q12E, R58K, I60L, P66S, P69S, L75I, R76K, E102D; p24: M6I, L15M, E128D, T171V, E180D, D187E, V191I; p6: N47S; p7: V13I, R29K, K47R; pro: D60E, Q63E, E65D, I72T; rev: E11D, R14T, Y28F, R53G, A54E, V104G, P107S, *117Q; tat: V4I, S24N, R29Q, R36H, I39V, T58P, Q60H, D67N, S68P, P81T; vif: H30Y, R37K, F39C, V51I, E61D, D62N, S118F, T159E, Q178R, G182D; vpr: N28S, I63M, S94N; vpu: P3T, A8T, L12F, L27F, N81I"}}},{"name":"MW802822","node_attrs":{"div":0.17219,"accession":"MW802822","clade_membership":{"value":"CRF89_BF1"},"country":{"value":"ES"},"date":{"value":2017.0},"Strain_name":{"value":"M1079"},"LANL_subtype":{"value":"CRF89_BF1"}},"branch_attrs":{"mutations":{"nuc":["C151T","T165-","G167A","A359G","A425G","C471G","A491G","A516T","G524A","G557A","C587T","G615A","G650A","A653G","A656G","C662T","A747G","T748C","G755C","G762A","A774C","A779G","C845T","A968T","A980G","T992G","T1052C","C1060A","C1094T","G1109A","C1220A","G1290A","A1359T","G1430A","G1472A","G1495A","A1496G","A1526G","A1529C","A1532C","A1592G","C1598T","G1697A","T1741C","A1743G","T1785G","A1786G","C1787A","G1794A","C1796T","A1804G","C1826T","A1839G","A1857T","A1894T","G1920A","A1980G","A1986C","G2008A","A2012G","A2014G","T2080G","G2134A","A2230G","T2257C","C2263T","C2281T","C2296T","T2326C","A2403G","G2602A","A2629G","C2635T","A2726G","A2794G","A2896G","G2969A","A3020C","C3067A","C3095A","T3197G","G3221T","C3225T","A3226G","A3274G","G3307A","C3322T","G3442A","C3498T","C3535T","A3543T","G3557A","G3631A","C3649A","A3655G","G3686A","A3817G","G3989A","T4039C","A4096G","C4141T","A4148G","G4263C","T4388G","C4501T","G4689A","T4702C","A4721G","A4771C","G4799A","C4803A","T4842G","A4845G","A4847G","G4862A","C4871T","A4911C","T4914C","T4965C","A4969G","T5018G","C5019T","G5069A","G5128A","A5150C","G5176A","A5191G","A5233C","C5237T","C5248T","T5354C","T5391C","T5436C","A5446G","C5461A","G5463A","C5559T","A5570G","T5584C","G5599A","A5614C","A5622G","G5653A","C5679T","C5688G","G5700A","G5729A","A5735T","A5743C","A5805G","-5825A","T5860C","G5864A","C5924T","G6020A","G6029C","A6030C","A6031T","A6079G","C6087G","A6094C","T6134C","T6154C","-6167A","-6170G","-6171T","-6172C","-6173A","-6174G","-6175T","A6182G","A6186G","C6187T","C6190T","A6194G","C6198G","-6201A","C6205T","T6213G","A6282T","A6286C","G6323A","A6324G","G6329A","C6331T","A6337C","-6340T","T6341A","C6343T","G6425A","A6464G","G6466A","G6532A","G6572A","A6659T","G6682A","-6697A","-6698C","-6699C","-6700G","-6701A","-6702T","A6733G","C6748T","C6765T","A6789C","A6790C","A6796G","A6801G","A6805G","A6809G","A6812G","T6815C","A6818C","G6820A","T6821A","C6822A","T6823A","A6833C","A6834C","A6848C","C6849A","C6925T","A6926G","T6932G","-6948A","-6949A","-6950A","-6951C","-6952A","C6991-","-6994A","-6995G","-6997C","-6999A","A7001G","-7002G","T7003G","G7004A","A7037G","T7039G","G7060A","C7064A","A7085G","A7113G","T7150C","A7160G","-7162T","A7225G","A7231G","A7268G","A7375G","A7450G","G7453A","C7463A","A7522G","C7547A","T7591C","C7625T","A7626T","G7630T","T7636C","C7651A","A7669G","G7690A","G7712A","A7713T","A7747C","A7756T","C7801A","G7862T","G7943C","A8018C","G8050A","T8155C","T8156C","G8157T","A8193G","G8194A","T8221C","A8241G","A8258T","G8274T","T8278A","G8329A","T8334G","G8373A","A8388G","G8418A","A8456C","A8531G","G8590C","C8640A","A8647G","T8648G","G8666T","C8688A","C8741T","A8746T","T8747C","C8791A","C8810T","T8860C","G8864T","A8869C","G8892C","A8901T","G8902C","G8905C","A8938G","A8953G","C8957T","A8969G","T9025G","C9041A","C9068T"],"INT":["V72I","T125A","G163A","S205A"],"RT-p51":["K103R","I178M","R211G","V292I","I309L","D324E","Q334N","L368V","T376S","T377M","I393M"],"RT-p66":["K103R","I178M","R211G","V292I","I309L","D324E","Q334N","L368V","T376S","T377M","I393M","S468F","Q483L","D488N","V531I"],"gp120":["D4N","D34E","E59P","T78R","A106V","-107S","N108T","-109N","T110A","-111S","-114A","-116N","-117N","-119D","-120N","K143I","D157S","D159N","T161S","-162S","A191T","K204E","E240K","T269S","-280P","N304I","K312T","Q316R","T319A","K320E","K322Q","S323K","T332Q","N358D","S360A","-365K","-367T","-376G","-377S","I395V","I411V","Q414H","N420S","N436D","K472E"],"gp41":["I24M","N42S","L54M","L82M","Q108F","E137I","E148D","N166K","V187F","N239H","W285L","K297R","E313G","I319L","R324I","F325L","L344W"],"nef":["V11I","I16V","A26T","E38D","G83A","L100I","Y102W","E108D","H116N","Y120F","Y135F","P150Q","M173T","E174D","E176A","K184Q","R188T","H199R","K204R"],"p17":["L46V","I61L","V94I"],"p24":["M6A","V11I","E79D","H87Q","T110N","D163E","D187N","T210S"],"p6":["I21T","T22A","-26K","Q28K","K30E","K31G","E32Q","E33G","A39T","K42R"],"p7":["R10K","E21D"],"pro":["K14R","K20M","R41K","N61S","Q63T","I72V"],"rev":["A15V","I19V","R32T","Q57A","A68T","L103P","E116K"],"tat":["S24G","H65R","S70P","Q78H"],"vif":["A35T","F39S","D62A","H73N","S86A","I87V","I109L","Y110H","Y127H","K128R","R181K"],"vpr":["N16H","H45Y","S96P"],"vpu":["A16T","R41K","Y43F","I46L","A61V","P73H"]},"labels":{"aa":"INT: V72I, T125A, G163A, S205A; RT-p51: K103R, I178M, R211G, V292I, I309L, D324E, Q334N, L368V, T376S, T377M, I393M; RT-p66: K103R, I178M, R211G, V292I, I309L, D324E, Q334N, L368V, T376S, T377M, I393M, S468F, Q483L, D488N, V531I; gp120: D4N, D34E, E59P, T78R, A106V, -107S, N108T, -109N, T110A, -111S, -114A, -116N, -117N, -119D, -120N, K143I, D157S, D159N, T161S, -162S, A191T, K204E, E240K, T269S, -280P, N304I, K312T, Q316R, T319A, K320E, K322Q, S323K, T332Q, N358D, S360A, -365K, -367T, -376G, -377S, I395V, I411V, Q414H, N420S, N436D, K472E; gp41: I24M, N42S, L54M, L82M, Q108F, E137I, E148D, N166K, V187F, N239H, W285L, K297R, E313G, I319L, R324I, F325L, L344W; nef: V11I, I16V, A26T, E38D, G83A, L100I, Y102W, E108D, H116N, Y120F, Y135F, P150Q, M173T, E174D, E176A, K184Q, R188T, H199R, K204R; p17: L46V, I61L, V94I; p24: M6A, V11I, E79D, H87Q, T110N, D163E, D187N, T210S; p6: I21T, T22A, -26K, Q28K, K30E, K31G, E32Q, E33G, A39T, K42R; p7: R10K, E21D; pro: K14R, K20M, R41K, N61S, Q63T, I72V; rev: A15V, I19V, R32T, Q57A, A68T, L103P, E116K; tat: S24G, H65R, S70P, Q78H; vif: A35T, F39S, D62A, H73N, S86A, I87V, I109L, Y110H, Y127H, K128R, R181K; vpr: N16H, H45Y, S96P; vpu: A16T, R41K, Y43F, I46L, A61V, 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N80I"}}},{"name":"MW344920","node_attrs":{"div":0.17374000000000003,"accession":"MW344920","clade_membership":{"value":"CRF89_BF1"},"country":{"value":"ES"},"date":{"value":2016.0},"Strain_name":{"value":"P4464"},"LANL_subtype":{"value":"CRF89_BF1"}},"branch_attrs":{"mutations":{"nuc":["T156-","C207T","A215G","T288C","C369A","G453A","G455A","A516T","T534A","C537A","G595A","G607A","A609G","A678G","A682G","A686G","G689A","A699C","G735A","C830T","T861G","A878G","A941G","T1001C","C1005G","T1046A","C1133T","G1192A","T1214C","A1217G","T1299C","T1310C","G1394A","T1403C","T1444C","C1447A","A1448T","A1449-","A1450-","T1451-","A1452-","C1453-","A1454-","-1459C","A1474G","A1494C","G1495A","G1498A","A1525G","G1588A","A1614G","T1646C","A1687G","G1734-","A1735-","G1736-","T1741A","A1743G","C1744T","C1745A","-1746A","-1747C","-1748C","C1825A","C1903A","G1942A","A1969G","A2149G","T2199G","A2332G","G2362A","T2434C","A2459G","A2519G","C2596T","A2665C","C2708T","C2714G","A2825G","G2830A","C2848T","G2887A","G2951A","C2958G","A2972G","A3031G","A3097G","G3158A","G3170A","G3264A","C3266T","C3346T","C3399T","T3424C","G3483A","A3490G","C3542A","G3544T","A3565G","T3566C","A3608G","A3630G","T3644A","C3653A","A3676C","G3755A","C3756A","C3857A","G3859A","G3869A","G3901A","A3910C","G3916A","G3935A","G3952A","G3989A","A4003G","T4039G","C4075T","G4176A","G4249A","G4696A","T4702G","G4727A","G4735A","C4761T","G4770A","A4773G","C4827T","C4871A","C4889T","T4910C","G5030A","A5061G","G5123A","A5186C","T5197C","G5212A","T5224A","A5233G","T5254C","G5290A","T5294C","G5365C","T5384C","T5479C","C5481A","G5483A","C5484A","C5511T","G5557A","G5575A","A5614C","T5616C","C5663T","C5688A","G5729A","A5730C","G5737C","A5748T","A5840T","A5842G","A5845G","A5861G","A5862C","G5864A","A5867G","T5870C","G5948A","C5989T","C6007T","G6020A","A6022G","T6025C","A6065G","G6121A","-6167A","-6168A","-6169T","-6170G","-6171T","-6172C","C6180T","A6185G","A6186C","C6195A","A6200-","C6202-","G6204-","C6205-","A6206-","C6207-","C6208-","G6224A","G6225A","C6228A","T6250G","C6278A","A6283G","C6287A","A6288C","C6305A","T6306C","G6323A","T6328C","C6331T","A6332G","T6334G","G6336C","G6425A","A6456G","T6457A","C6482A","C6483T","A6508G","G6530A","G6611A","C6618T","A6628G","T6721C","C6748T","G6754A","A6778C","T6787C","T6794G","A6805-","A6806G","G6808A","A6809G","C6810G","A6811C","G6814A","T6815G","A6817T","G6820A","T6821G","C6822T","T6823C","C6824T","A6825C","C6829T","A6833-","C6849A","A6910G","G6935A","G6936A","A6947G","C6949A","-6950A","-6951C","-6952A","-6953G","-6954A","-6955G","-6956T","-6957T","-6958C","-6959A","-6960A","-6961G","-6962A","-6963A","-6964T","C6991-","C7006A","A7013G","C7020T","G7079C","C7089A","A7157G","A7161C","-7162A","T7170C","A7197G","A7216G","A7225G","A7275G","G7288A","G7440T","C7498T","G7513A","G7517A","G7519A","A7532C","A7542G","G7552A","A7553C","T7579C","A7620G","A7641G","T7642G","G7701A","A7721G","C7742A","G7759A","C7801T","A7858G","G7862A","G7890A","T7913G","T7921A","A7947G","G7992A","G7997A","A7998C","C8009A","A8019G","A8023G","A8076G","G8079A","A8105G","A8118G","G8130A","A8152G","T8158G","A8170C","A8172G","G8173A","T8176C","G8208A","C8213A","C8223T","A8241G","A8255T","A8258C","T8281C","C8291T","T8292G","A8447G","A8456C","C8499G","T8505C","A8531C","G8554A","G8656A","A8666C","T8746G","C8747G","A8754T","C8755G","G8774A","T8786C","A8805C","C8840T","A8852G","T8914A","A8930G","C8960A","T8961G","A8963C","C8964T","A8965G","A8967T","T8972C","A9007G","-9009G","-9014G","G9016C"],"INT":["L28I","V32I","V54I","V72I","G134D"],"RT-p51":["V35R","K122E","I142V","Q207E","I244V","A286T","A288G","I293V","A355T","G359S","R390K","A435V"],"RT-p66":["V35R","K122E","I142V","Q207E","I244V","A286T","A288G","I293V","A355T","G359S","R390K","A435V","R463K","Q483N","S491P","I505V","K512R","L517I","Q520K","K527N","A554N"],"gp120":["N3A","D4N","N5D","A32T","V56M","E59K","N71D","-105N","-106L","-107K","N108E","T110-","T112-","G124K","A125E","N132K","K142M","H145T","L151T","D157N","N160G","A191T","N201R","P210I","V226M","A253T","T255I","L314V","S326-","N327-","-328N","T332K","G361K","N365E","-367E","-368F","-369K","-370N","-371E","T387V","P389L","A409P","A412E","N435D","N436T","I439T","K448R","K474R"],"gp41":["V72I","K77Q","Q80R","I84L","K106R","D109E","D113G","R133K","N140G","Q147K","V187I","R196K","L204V","F206L","E215G","G230D","D232T","N239S","H258R","R259H","T268A","E272G","R276H","C285W","Q290R","S302N","L304I","T307I","E313G","I318F","I319L","L330C"],"nef":["E38D","P53A","R71K","R105K","E108D","F135W","T138C","K155Q","K184E","F191Y","C206*","*207D"],"p17":["Q12K","E40K","I61L","S67T","L68I","C87Y","R91K","I92V","T115A","Q116R","K122Q"],"p2":["V7A","T8N","T10-","A11-","N12T"],"p24":["V2I","S44A","P92A","R154K"],"p6":["N3S","-23P","P24S","S25P","P49H"],"p7":["K3R","R10Q","R11K","K20R","R41K","T50A"],"pro":["D35E"],"rev":["R50N","A54E","I59V","N86S","I102V","L104V","T108P","V109I"],"tat":["L3P","Y35Q","R36Q","G61S","D67N","N80D"],"vif":["R37K","F39C","R50K","D62N","K63E","T159A"],"vp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L28I, V32I, V54I, V72I, G134D; RT-p51: V35R, K122E, I142V, Q207E, I244V, A286T, A288G, I293V, A355T, G359S, R390K, A435V; RT-p66: V35R, K122E, I142V, Q207E, I244V, A286T, A288G, I293V, A355T, G359S, R390K, A435V, R463K, Q483N, S491P, I505V, K512R, L517I, Q520K, K527N, A554N; gp120: N3A, D4N, N5D, A32T, V56M, E59K, N71D, -105N, -106L, -107K, N108E, T110-, T112-, G124K, A125E, N132K, K142M, H145T, L151T, D157N, N160G, A191T, N201R, P210I, V226M, A253T, T255I, L314V, S326-, N327-, -328N, T332K, G361K, N365E, -367E, -368F, -369K, -370N, -371E, T387V, P389L, A409P, A412E, N435D, N436T, I439T, K448R, K474R; gp41: V72I, K77Q, Q80R, I84L, K106R, D109E, D113G, R133K, N140G, Q147K, V187I, R196K, L204V, F206L, E215G, G230D, D232T, N239S, H258R, R259H, T268A, E272G, R276H, C285W, Q290R, S302N, L304I, T307I, E313G, I318F, I319L, L330C; nef: E38D, P53A, R71K, R105K, E108D, F135W, T138C, K155Q, K184E, F191Y, C206*, *207D; p17: Q12K, E40K, I61L, S67T, L68I, C87Y, R91K, I92V, T115A, Q116R, K122Q; p2: 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E11D, L28I, P30A, A125V, G134D, V165I, S205A, T206S, R211K, I220V; RT-p51: D123E, E138A, I142T, D177E, I178L, T200A, I202V, F214L, V245I, S251C, R281K, I293V, P294Q, K297R, D324E, R356K, K366R, T376A, S379G, T386I, R390K, L394Q, E436G; RT-p66: D123E, E138A, I142T, D177E, I178L, T200A, I202V, F214L, V245I, S251C, R281K, I293V, P294Q, K297R, D324E, R356K, K366R, T376A, S379G, T386I, R390K, L394Q, E436G, S446A, K452E, K465Q, A466V, D488N, K527M, K530R, V531I, I559V; gp120: N1S, A2V, E4G, D34K, V37A, N52A, V57N, E59T, N64E, N71D, T78K, D85E, -105S, -106L, -107K, N108E, L142R, I156M, N157D, D159G, N160T, S161-, S162-, D183E, Y195F, N201K, K203E, K204N, K212R, K224R, E240K, I243V, E262G, -280R, R287Q, K300R, V305I, T308E, N311G, K312Q, E315T, K318R, -319K, K322E, H324L, -328N, -329T, T330K, K332R, -367R, -368E, -369N, -370E, -371T, -372V, -373F, -374R, -375N, -376E, V396I, M398L, A409P, N414E, N433G, N434G, K436G, N446D, K448R, I463V, V468I, R472S, K479R; gp41: M4L, G13S, T25A, N42S, S101Y, 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E11D, K111R, T122I, S123N, A124T; RT-p51: T39L, V135I, Q207E, R281G, T286P, I326V, L394Q, A435E; RT-p66: T39L, V135I, Q207E, R281G, T286P, I326V, L394Q, A435E, A477T, Q524P; gp120: T22P, S32A, E34D, Q54R, V56L, E57D, I80V, -106V, -109N, -111G, -112T, -113N, -114S, -115T, -116S, -118P, -119L, -120K, -121E, -123L, A125E, Q127K, N132K, L142K, K143E, R150K, L151S, S162T, K204E, R245S, T255N, N261K, S263P, Q265W, I281L, R287Q, G307R, K312N, L314I, K320R, R322G, P326E, -328G, -329T, K332R, S335T, N364D, D365-, T366-, -384D, N420T, L425I, N432K, N434T, N435T, K436G, T437N, E464Q, R472T, K482R; gp41: Y75F, K77S, Q79H, N96D, Q108L, E110A, D113N, K122R, S125N, N126S, N140R, Q147H, A151K, D163S, K172R, I210L, D247E, R277T, L303S, A325I; nef: E15A, A23T, G83A, F143Y, E151D, E176D, K182M; p1: K4R, I5L; p17: G49D, S54A, R58Q, G62A; p2: V7A, -11A, V13-; p24: A14S, L15I, V27I, E128D, T178S; p6: E19-, I21G, T22I, P23T, S24P, P25S, -26P; pro: N37D; rev: E10D, A15T, I21S, Y28P, T91P, Q95H, T108A, V109I; tat: N7S, K24S, R29K, L36W, G61D, I74T; vif: H30Y, F39S, H48N, K122Q, H127Y, K160R, E179K, S186R, N190H; vpr: G6E, E13A, E17A, N48D; vpu: V5D, L7V, A16T, D44E, A50T, -69D, E70-, P76L"}}},{"name":"AF408630","node_attrs":{"div":0.14864000000000002,"accession":"AF408630","clade_membership":{"value":"CRF12_BF"},"country":{"value":"AR"},"date":{"value":1997.0},"Strain_name":{"value":"A32989"},"LANL_subtype":{"value":"CRF12_BF"}},"branch_attrs":{"mutations":{"nuc":["A255C","T288C","A399C","C583T","A604G","G620A","A678G","T771G","G784A","G821A","T875C","A911T","T1040C","C1060A","A1186G","C1211T","T1280G","A1328G","T1334A","A1361G","A1492C","G1503A","A1525G","A1532C","A1660G","G1697A","G1709A","T1783A","C1826A","A1918G","C1985G","A1993C","A2119G","A2221G","A2224G","T2364G","A2380G","T2479A","C2581T","A2623G","C2749T","A2815G","G2828A","A2839C","C2848T","T2873A","A3031G","A3066G","A3109G","T3165C","A3221G","C3225T","G3264A","C3275T","G3283A","C3292A","C3319T","A3367G","C3415T","A3490G","A3503C","G3508A","G3556A","G3595A","A3619G","A3637G","A3676G","G3718A","A3766G","A3770G","A3877G","G3965A","A4076T","C4110T","C4146A","G4148A","G4255A","A4264C","G4495A","G4737A","A4769G","C4771G","A4773G","A4804T","T4820A","A4969G","T5003C","A5085C","A5200G","A5293C","A5302C","A5355G","G5483A","G5484C","G5548A","T5577A","T5584C","T5641C","C5654T","A5659T","C5686T","T5707A","T5708G","G5758C","G5791T","T5870C","C5917T","A5955T","T5992C","T6004C","G6023A","G6133A","A6158C","T6163C","A6168C","T6169C","G6170C","-6171A","C6172T","A6173G","A6177C","G6179A","C6180A","C6181A","C6183A","C6187T","C6190A","G6195A","C6196T","C6198G","T6199C","-6200A","-6201C","A6203C","G6204T","T6205G","A6206G","G6207A","C6208A","A6209-","C6210-","G6220T","T6222A","C6278G","A6288G","T6310C","C6325T","A6338C","A6350T","C6370T","C6404G","C6428A","T6460G","G6466C","C6562T","G6566C","A6573G","C6601T","G6605C","G6611A","A6654C","C6660T","C6713A","C6748G","C6758T","A6765G","G6771A","A6801G","A6807G","A6809G","T6815C","C6829G","-6833C","-6834C","G6871A","T6888C","G6889A","-6989G","-6990A","-6996G","-6997A","-6998T","-6999C","C7006A","T7009C","A7032G","A7036G","A7037G","A7107G","A7148C","T7150G","A7152C","A7154G","T7156G","C7170T","G7235A","T7243A","G7256A","G7269A","G7291C","T7325C","C7328A","G7346A","G7395A","G7440A","A7641G","G7712A","G7720A","G7846A","G7873A","T7913G","A7943G","G8006A","G8008A","C8009A","A8014G","T8028C","G8045C","G8208C","C8223T","G8249A","G8269A","T8277C","G8283A","T8366C","A8370T","G8373C","T8374G","G8385C","A8458G","A8487G","C8688A","G8759T","T8786C","C8809A","G8864T","T8887G","G8905T","C8906A","C8913T","G8915T","A8922T","A8924T","G8935A","T8947A","C8948T","C9023T","C9041T","C9068T"],"INT":["D64N","I101L","T112I","A124N","A125T","G163S"],"RT-p51":["V90G","V245M","E248D","L260I","D324G","M357T","T376A","T377I","R390K","D399E"],"RT-p66":["V90G","V245M","E248D","L260I","D324G","M357T","T376A","T377I","R390K","D399E","T470P","I559V"],"gp120":["E34V","E57N","N102H","T104D","-106T","T107K","-109S","-111N","-112N","-113S","-114T","-115L","-116E","-117D","-118Q","E122-","L142V","Q145R","N160S","S161R","S162P","I166L","P184A","P192T","D202E","K204N","A238P","E240G","D251H","A253T","N267T","T269I","I298M","H302Y","N304S","S306N","Q316R","K318R","K319E","F325L","-328T","M345T","-367G","-368S","-369N","-370E","-371T","T385-","K393R","I395V","N418S","N432Q","N433T","N434G","K436Q","T439I","V461I","V468I","R472K","Q479H"],"gp41":["F8L","L9I","A15T","R31K","N42S","R46K","D113G","E137K","D163N","L204V","R214G","V235I","L242S","D248H","S302T","T307I","D316N","R327K"],"nef":["I10L","V11R","E15H","N39R","R49G","V85L","H116N","L139F","A156D","E174D","K182R","R188L","L191F","I194F","R198K","F202Y","D205G"],"p1":["K10R"],"p17":["A83V","Q90R","T115A"],"p2":["V12T"],"p24":["R18K","T110N","D152G"],"p6":["L35Q"],"p7":["Q9P","V13I","K20R"],"pro":["L10I","L63V","E65D"],"rev":["I21Y","E32G","R53H","A54K","S56G","R66P"],"tat":["K24R","R29Q","L36H","A58T","S70P"],"vif":["V51I","D62G","K63E","H73L","D78E","K128R","K167Q"],"vpr":["Q66H","I84V"],"vpu":["V5T","A16I","I18L","L27F","L34R","E51Q","D60E","A61L","E62S","E63A","A65G","A66D","L67M","-69P","E70L","M71I","G72L","P73G","L74N","P76-","G77-","N78-","I79-"]},"labels":{"aa":"INT: D64N, I101L, T112I, A124N, A125T, G163S; RT-p51: V90G, V245M, E248D, L260I, D324G, M357T, T376A, T377I, R390K, D399E; RT-p66: V90G, V245M, E248D, L260I, D324G, M357T, T376A, T377I, R390K, D399E, T470P, I559V; gp120: E34V, E57N, N102H, T104D, -106T, T107K, -109S, -111N, -112N, -113S, -114T, -115L, -116E, -117D, -118Q, E122-, L142V, Q145R, N160S, S161R, S162P, I166L, P184A, P192T, D202E, K204N, A238P, E240G, D251H, A253T, N267T, T269I, I298M, H302Y, N304S, S306N, Q316R, K318R, K319E, F325L, -328T, M345T, -367G, -368S, -369N, -370E, -371T, T385-, K393R, I395V, N418S, N432Q, N433T, N434G, K436Q, T439I, V461I, V468I, R472K, Q479H; gp41: F8L, L9I, A15T, R31K, N42S, R46K, D113G, E137K, D163N, L204V, R214G, V235I, L242S, D248H, S302T, T307I, D316N, R327K; nef: I10L, V11R, E15H, N39R, R49G, V85L, H116N, L139F, A156D, E174D, K182R, R188L, L191F, I194F, R198K, F202Y, D205G; p1: K10R; p17: A83V, Q90R, T115A; p2: V12T; p24: R18K, T110N, D152G; p6: L35Q; p7: Q9P, V13I, K20R; pro: L10I, L63V, E65D; rev: I21Y, E32G, R53H, A54K, S56G, R66P; tat: K24R, R29Q, L36H, A58T, S70P; vif: V51I, D62G, K63E, H73L, D78E, K128R, K167Q; vpr: Q66H, I84V; vpu: V5T, A16I, I18L, L27F, L34R, E51Q, D60E, A61L, E62S, E63A, A65G, A66D, L67M, -69P, E70L, M71I, G72L, P73G, L74N, P76-, G77-, N78-, I79-"}}}]},{"name":"CRF12_BF_NODE_0000007","node_attrs":{"div":0.12403000000000003,"clade_membership":{"value":"CRF12_BF"}},"branch_attrs":{"mutations":{"nuc":["G261-","C262-","T1063C","G2593A","A2725G","G2937A","C3319T","T3497C","A4060G","C4140G","G4263A","A4270G","G4407A","A4769C","T4932A","A4952T","G5548C","C5567A","A5866C","T6025A","-6171C","C6180G","T6242A","A6324G","C6343T","A6581G","-6697A","-6698C","-6699A","-6702T","G7315A","A7669G","T7913G","A7953G","G7965A","G8030T","T8035C","T8138A","C8648T","C8972G"],"INT":["T122S","R211K"],"RT-p51":["R281K"],"RT-p66":["R281K","S468P"],"gp120":["N157S","I243V","T330S"],"gp41":["M4I","N42S","L204V","D217G","G221E","A243S","W279R"],"p2":["V12T"],"p24":["L111P"],"rev":["E11D","L18I","S61I","Y63H","V97E"],"tat":["A58P","T64N","T82A","E86K"],"vif":["A61D","S116T","K122N"]},"labels":{"aa":"INT: T122S, R211K; RT-p51: R281K; RT-p66: R281K, S468P; gp120: N157S, I243V, T330S; gp41: M4I, N42S, L204V, D217G, G221E, A243S, W279R; p2: V12T; p24: L111P; rev: E11D, L18I, S61I, Y63H, V97E; tat: A58P, T64N, T82A, E86K; vif: A61D, S116T, K122N"}},"children":[{"name":"AF385935","node_attrs":{"div":0.15252000000000004,"accession":"AF385935","clade_membership":{"value":"CRF12_BF"},"country":{"value":"UY"},"date":{"value":1999.0},"Strain_name":{"value":"URTR35"},"LANL_subtype":{"value":"CRF12_BF"}},"branch_attrs":{"mutations":{"nuc":["A46G","T200C","G215A","A256G","G279A","A301G","A369G","G424A","A474G","G508A","G520C","A530G","G562A","A571T","C669A","C765T","G869A","C890T","A911G","T992A","A1193G","G1487A","A1529G","C1598T","C1670G","A1673G","T1676C","C1721T","A1733G","C1745A","-1746A","-1747C","-1748C","C1756A","C1761G","G1766A","A1774G","G1784A","G1942A","C1987T","A2161G","T2245A","C2263T","G2273A","T2383C","A2519G","G2524A","C2527T","G2530A","A2560T","T2597C","A2617G","A2665C","A2726G","G2727C","C2749T","A2773C","C2831T","T2899C","A3096T","T3121C","A3192G","A3196G","C3412T","T3431G","A3435G","G3483A","C3499T","G3595A","T3602A","G3664A","A3682G","A3715G","G3802A","A3808C","T3850C","C4075T","A4107G","C4147T","G4150A","A4178G","C4207T","A4262C","A4264C","G4267A","C4321T","T4388G","G4464A","G4495A","A4498G","C4534T","A4760T","A4774C","G4862A","G4864A","A5015G","A5085C","A5119G","G5121A","G5131A","A5191G","C5237T","G5267A","A5268C","T5384C","C5424T","G5427A","G5447A","C5461A","G5483T","G5491A","A5493G","A5494G","A5533G","A5556G","G5558A","G5561A","T5576A","C5611A","A5613C","A5621T","A5631T","C5651T","T5677A","A5704C","G5711A","T5731C","A5733T","A5734C","C5825A","C5878T","A5956C","G5958C","A5959G","T5964C","T5980A","G6020A","A6073G","T6184A","A6185C","A6186G","G6194T","G6195T","-6200C","-6201A","C6202A","G6204A","G6211C","-6212C","-6213T","-6214G","-6215A","-6216A","-6217G","T6222A","C6243G","A6288G","A6323G","C6325T","G6333A","A6335G","T6358C","T6457A","C6483T","A6488C","G6490A","C6612T","A6613G","C6619A","C6660T","C6667T","-6700G","-6701C","A6703G","A6752C","A6770G","G6771A","C6777A","A6785C","C6792A","C6800G","A6805G","A6807G","C6810A","A6812G","G6819A","-6833T","-6834C","A6836G","A6839G","A6842G","C6843A","C6876T","A6884G","-6989G","-6990A","-6992A","-6994A","-6995C","-6996A","-6997A","-6998A","-6999C","T7015C","G7040A","A7100G","A7113G","A7126G","A7148C","A7151C","A7152C","A7154G","A7160C","A7210G","T7322A","C7328A","G7426A","G7441A","C7463T","G7524A","A7525G","A7626T","A7629G","G7633T","G7642C","C7651T","G7658C","A7676G","C7684T","A7688C","T7690G","A7714G","A7722C","A7741G","A7818G","A7903G","A7921G","A7947G","C7959T","T7968C","G7992A","C8048T","T8159G","A8170C","C8189A","A8196G","G8245A","T8277C","C8320T","T8375A","T8387G","G8441A","A8459C","T8595A","C8607T","A8608T","A8636T","T8646C","G8666C","G8759T","A8794C","A8870G","C8873A","A8886C","T8887A","C8904A","T8914G","G8935A","G8942T","C8952A","G8991A","C9041T","T9071G","T9073C","A9131G"],"INT":["E11D","K111R","I135V","G163H","S205A","S230N"],"RT-p51":["V60I","I142V","R211A","Q334L","K366R"],"RT-p66":["V60I","I142V","R211A","Q334L","K366R","S446A","N447S","R463K","L503I"],"gp120":["E4D","E34D","R35T","V37A","V56I","-106L","T107K","N108E","-123Q","Q145R","D159G","N160G","S161N","S162N","N201K","P210L","K212Q","A253V","T269I","I281-","-282Q","-283L","K300Q","S306D","T308-","Q309-","W310-","N311-","K312-","T313-","L314-","E315K","V317W","K318H","R322E","S323E","Y324V","F325R","P326K","N327E","-328L","-329K","P341L","T344A","-367Q","-368T","-369N","-384D","V396I","T416A","N420S","N432H","N433P","N434D","K436H"],"gp41":["L7M","L9I","R74K","Q108L","E109G","E110D","E119Q","S125G","N129Q","N140T","K172R","E215G","P219L","I222T","G230D","W286G","L296I","N298S"],"nef":["V85I","H89F","E98D","Y102H","E108D","L139F","E151A","D177E","K182Q","R188S","L191R","R198K","Q204K"],"p17":["K12E","R30K","N47D","R58Q","G62A","R76K","Y79F","Q112K"],"p24":["H12Y","A14S","H87Q"],"p6":["P23T","S24P","P25S","-26Q","Q28E","D32G"],"rev":["K14R","A15T","V16I","P67L","V104G","T108P","T114N"],"tat":["L3P","V39M","T40A","R53G","G61D","S62N","V67D","N80D","P84S","S87P"],"vif":["K63T","R93K","K167Q","Q178R","E179K","G182D"],"vpr":["G6E","H45Y","E55T"],"vpu":["Q2N","A15V","S24T","I33L","R35K","I43L","P73H"]},"labels":{"aa":"INT: E11D, K111R, I135V, G163H, S205A, S230N; RT-p51: V60I, I142V, R211A, Q334L, K366R; RT-p66: V60I, I142V, R211A, Q334L, K366R, S446A, N447S, R463K, L503I; gp120: E4D, E34D, R35T, V37A, V56I, -106L, T107K, N108E, -123Q, Q145R, D159G, N160G, S161N, S162N, N201K, P210L, K212Q, A253V, T269I, I281-, -282Q, -283L, K300Q, S306D, T308-, Q309-, W310-, N311-, K312-, T313-, L314-, E315K, V317W, K318H, R322E, S323E, Y324V, F325R, P326K, N327E, -328L, -329K, P341L, T344A, -367Q, -368T, -369N, -384D, V396I, T416A, N420S, N432H, N433P, N434D, K436H; gp41: L7M, L9I, R74K, Q108L, E109G, E110D, E119Q, S125G, N129Q, N140T, K172R, E215G, P219L, I222T, G230D, W286G, L296I, N298S; nef: V85I, H89F, E98D, Y102H, E108D, L139F, E151A, D177E, K182Q, R188S, L191R, R198K, Q204K; p17: K12E, R30K, N47D, R58Q, G62A, R76K, Y79F, Q112K; p24: H12Y, A14S, H87Q; p6: P23T, S24P, P25S, -26Q, Q28E, D32G; rev: K14R, A15T, V16I, P67L, V104G, T108P, T114N; tat: L3P, V39M, T40A, R53G, G61D, S62N, V67D, N80D, P84S, S87P; vif: K63T, R93K, K167Q, Q178R, E179K, G182D; vpr: G6E, H45Y, E55T; vpu: Q2N, A15V, S24T, I33L, R35K, I43L, 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E60G, K63I, D78E, R95S, R128K, V166I, S186N; vpr: T19A, I83V, I84M; vpu: S2T, D3N, V10A, V14L, I18V, L33V, V34I, E44K, R45K"}}}]},{"name":"F1_NODE_0000013","node_attrs":{"div":0.08567,"clade_membership":{"value":"F1"}},"branch_attrs":{"mutations":{"nuc":["C417A","C456T","C471G","C482A","T495C","C774A","-1444C","-1446A","-1455G","-1456C","A1733-","A1740G","G1826T","A2678C","A2713G","T3013C","G3508A","A4642G","C5412T","A5567T","C5704T","C5878T","T6024G","G6204A","-6212A","G6303A","-6340C","G6808A","T6835-","A7095G","T7150G","C8741T","G8970A","A8971G","C8978-","G9011C","C9017A","C9018G"],"INT":["T218I"],"RT-p51":["I195L"],"RT-p66":["I195L"],"gp120":["-109D","-110T","R150K","R316Q"],"p17":["Q28K","L46V","S54P"],"p24":["L15I"],"tat":["N64I"]},"labels":{"aa":"INT: T218I; RT-p51: I195L; RT-p66: I195L; gp120: -109D, -110T, R150K, R316Q; p17: Q28K, L46V, S54P; p24: L15I; tat: 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R20K, I112R, G193D; RT-p51: T39A, K174R, D248N, P345T; RT-p66: T39A, K174R, D248N, P294T, P345T, K452Q, V531I; gp120: -107K, N108E, R138N, I156L, S160N, I305V, L314V, E315-, V317R, R318-, -379N, N414S, N432Q, N433-, V468I; gp41: V2A, A6L, E110Q, I135L, G215E, R277G, T307I; nef: V11-, M20I, Q35R, A83G, K104Q, D174E, I194V; p1: N9H; p17: F79Y, V82I, K91R; p24: N183G; p6: S3N; p7: R26K; pro: I72T; rev: E68A, T93A, E95R; tat: L3P, T23N, R56H, D80N; vif: V31I, F39S, I51V, D78E, R95S, E117D, H127Y, I129V, Q178R, T180I; vpu: D3H, L4V, K31R"}},"children":[{"name":"AB485658","node_attrs":{"div":0.12284,"accession":"AB485658","clade_membership":{"value":"F1"},"country":{"value":"RO"},"date":{"value":1996.0},"Strain_name":{"value":"BCI_R07"},"LANL_subtype":{"value":"F1"}},"branch_attrs":{"mutations":{"nuc":["G474A","A660C","A661G","G703T","A785G","C890T","A1093C","A1125G","T1280A","A1308C","A1343T","G1404A","G1419A","G1443A","A1452G","G1487A","A1496G","G1503A","T1676C","C1706T","A1712C","-1733G","G1736-","T1741A","-1746A","-1747C","-1748T","C1782A","A1832T","C1853T","A2029G","T2129C","A2182G","T2215C","T2257C","A2293G","C2476T","G2580A","T2581C","A2629C","G2630A","C2635T","A2698G","G2714A","A2716C","A2803G","C2952T","C2968T","C2975A","C2978T","G3019A","C3067T","A3115G","T3225C","C3322T","T3345C","A3398G","A3592G","G3595A","G3679A","T3746C","G3920A","A3989G","T3991C","G4354T","C4357T","G4590T","G4642A","A4964G","T5197C","G5199A","T5356C","A5364G","G5365C","A5447G","G5507A","G5556A","A5564C","G5565A","C5568A","G5668A","T5684C","A5733G","T5772C","G5775A","G5784T","G5790A","C5792A","C5795A","T5799G","G5802A","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","G5861A","C5866T","C5869A","A5908G","A5935C","C6010T","T6023G","G6024A","C6026T","A6030T","C6110G","T6163-","A6164-","C6165-","T6166-","G6167-","A6168-","T6169-","A6173-","A6179-","C6184T","A6194G","-6198C","A6209C","T6241C","G6253A","A6266G","A6282G","T6285C","T6289G","A6320C","A6324G","T6325C","A6330C","A6336C","C6340T","T6457G","A6464G","G6572A","G6611A","A6628G","T6655C","A6684G","C6692T","A6695T","A6715C","T6722C","G6725A","T6733G","G6754A","A6765T","G6771A","A6789C","A6790C","A6806-","G6807C","-6809A","T6822G","-6832A","-6833G","-6834G","-6835G","A6837-","T6857C","T6938C","-6947A","-6948G","-6949T","-6950A","-6951G","-6952C","-6953A","-6954C","-6955G","-6971A","-6972G","-6973C","-6974C","-6975C","-6976C","-6977G","-6978A","-6979A","-6980G","-6981G","-6982A","-6983G","-6984T","-6985G","-6986T","-6987T","-6992A","-6993C","-6994G","-6995A","-6996G","-6997C","-6998C","-6999A","T7003A","C7006A","C7008A","C7020T","A7063C","A7148C","T7153-","G7161A","A7274C","A7301C","A7313T","T7325C","A7366G","A7504C","G7630T","G7631C","A7666C","C7692T","G7701A","G7702C","A7722T","T7774C","A7782C","T7796A","T7801G","A7818G","A7846G","G7947A","G7987A","A7998G","C8009A","G8269A","A8273G","C8277T","T8278G","G8279C","G8280T","G8283C","G8288A","G8427A","C8514G","T8567G","T8569C","A8570G","C8590G","G8595C","A8617G","A8662G","C8688A","T8740C","A8750G","G8761A","G8834A","A8892C","G8917A","C8921T","T8923A","A8935G","C8966T","G9026A","C9078T"],"INT":["A49T","I72V","S124G","G272V"],"RT-p51":["C162Y","V179I","E207T","A286V","P294T","V417A"],"RT-p66":["C162Y","V179I","E207T","A286V","V417A"],"gp120":["A3T","N5K","W57D","E59V","Q86E","D105N","M133I","N138G","K143R","V144A","H145Q","N157S","N159T","N161G","S162P","Y163L","R164N","L165N","I166T","N167S","N201K","K204E","E240K","K277R","H280Y","Q287H","Y290H","A291T","G293D","D294R","N304I","S306N","K312T","S335P","-365S","-366S","-367T","-373S","-374P","-375E","-376G","-377V","-378F","-380T","-381S","-382H","-383K","-384G","T385N","P389L","-436E","K474Q"],"gp41":["I4L","F8L","E121D","T130I","R133N","N140I","N160T","S165T","N166K","K172R","D232G","R324G","A325V","G326L","R327T","V329I"],"nef":["I10L","-11A","G29R","L58V","E64D","L76P","V85L","K92R","Q107R","H116N","I133T","G140E","K184Q","R192K","V194E","K198R"],"p17":["D47N","N109R","G123V"],"p2":["A7T","N9-","T10S","-12A"],"p24":["N121T","R132G","N193H","V230I"],"p6":["I21T","L35M"],"p7":["R11K","V13I"],"pro":["T12S"],"rev":["R17Q","A47T","A54E"],"tat":["K24R","G44D","Q63P"],"vif":["E2*"],"vpr":["R32K","I84T","R87A"],"vpu":["V21I","V26A"]},"labels":{"aa":"INT: 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E11D, N17S, S24N; RT-p51: E36D, T39I, T173A, E207K, K211A, L377V, A435I; RT-p66: E36D, T39I, T173A, D177E, E207K, K211A, L377V, A435I, K452E; gp120: A3K, V57D, -59T, N105S, -106A, D251N, K322R, E401G, N418R, E464Q, V468I; gp41: K77Q, D109K, D113E, I135L, E137T, A243T, G286W, S293G, F304L, N305D, A321I, L340F; nef: I16V, T23A, R178K; p17: M31L, S54T, Q69P, E93D, V94I; p24: T178S, E180D; p6: P23T, S24P, P25S, -26P, L35Q, K42R; pro: I72V; rev: T10A, E11D, V16I, S61D, L64V, P100S, G104V, E111G; tat: T58P, S62N; vif: R37K, F39S, E61K, I66V, E179G; vpr: G41N, N48H, I60L; vpu: A10T, 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K44I"}}}]},{"name":"F1_NODE_0000028","node_attrs":{"div":0.09023,"clade_membership":{"value":"F1"}},"branch_attrs":{"mutations":{"nuc":["A256-","-280G","G404A","G424A","A426C","G508A","G585A","T586C","G641C","A678G","T748C","C767T","A959G","C1060A","G1498A","G1588A","C1730T","A1835G","A1849G","C2476T","T2499C","G2524A","C2527T","T2602G","C2605T","C2613A","A2615C","A3088G","G3100C","A3241T","C3857T","C4321A","A4407G","C4444T","A4781G","G5179A","A5225G","T5384C","A5699G","C5763T","A5863-","G6029A","-6171C","C6183A","-6203A","-6216A","T6242A","C6278A","T6337-","G6339-","-6689A","-6691A","C6745T","T6794A","A6812G","G6814A","T6829C","-6833C","-6995G","-6996A","-6999C","C7064A","A7107G","A7148C","T7150G","A7161G","C7463A","A7669G","T8205C","C8460A","A8540G","C8590G","C8595G","A8886C","C8913T","A8918G","C8921T","A8922G","A8924G","A9007G","-9014T","A9019T","-9041A","-9042G"],"INT":["K211R"],"RT-p51":["V135T","D169E","T173K","K174Q"],"RT-p66":["V135T","D169E","T173K","K174Q"],"gp120":["L106A","-112T","S130T","N159E","S160T","N161-","A291T","L314I","K320E","N432Q","-436T"],"gp41":["M4I","I301T"],"nef":["A83G","L85V","K182Q","I194V"],"p17":["R30K","M31L","V84T","T115A"],"p2":["T12V"],"p24":["L6P"],"p7":["R11K","R41K"],"pro":["I13V"],"tat":["L3P"],"vpr":["H77Q"],"vpu":["K31R"]},"labels":{"aa":"INT: K211R; RT-p51: V135T, D169E, T173K, K174Q; RT-p66: V135T, D169E, T173K, K174Q; gp120: L106A, -112T, S130T, N159E, S160T, N161-, A291T, L314I, K320E, N432Q, -436T; gp41: M4I, I301T; nef: A83G, L85V, K182Q, I194V; p17: R30K, M31L, V84T, T115A; p2: T12V; p24: L6P; p7: R11K, R41K; pro: I13V; tat: L3P; vpr: H77Q; vpu: K31R"}},"children":[{"name":"MG365764","node_attrs":{"div":0.12151,"accession":"MG365764","clade_membership":{"value":"F1"},"country":{"value":"BR"},"date":{"value":2012.0},"Strain_name":{"value":"12BRRJPR51"},"LANL_subtype":{"value":"F1"}},"branch_attrs":{"mutations":{"nuc":["A14G","C151A","A152-","C281-","A303T","A418G","A425G","C435T","G455A","T495C","C503A","C525T","A571T","G595T","A604G","G650A","C662T","C681A","A735G","C765T","T861G","G989A","A998G","A1060G","C1118T","G1256A","G1388A","A1415T","C1439A","A1448G","A1464C","A1525G","A1526G","A1536C","C1541A","A1545C","C1556A","A1589G","C1656A","G1691A","G1697A","G1720T","A1733G","T1752C","T1783A","A1839G","T1864C","C1903A","A1906G","C1913T","A1966G","T1986A","T1999C","T2013C","G2038T","C2044T","G2173A","A2212G","C2485T","C2500A","C2684A","A2713G","A2716C","A2743C","A2755G","G2837A","G2914A","A2925G","G3015A","A3079G","C3095G","G3221T","C3224T","G3250A","A3251C","A3264G","G3307C","C3415T","G3442A","C3492T","T3517C","C3567T","G3643A","T3644A","A3766G","A3808C","T3820C","G3834A","G3859A","A3877G","A3913G","G3925A","T3962C","A4076C","T4085C","A4112G","C4147T","G4150A","C4247T","G4255A","A4376G","G4622A","A4642G","A4695G","G4727A","G4735A","G4737A","G4864A","C4890T","C4902T","T4914C","A4937C","A4964G","A4970G","A4993C","A5058C","A5065G","G5128A","G5167T","G5185A","T5203C","G5226C","T5313C","T5336G","T5339C","T5356C","G5359C","G5382T","T5391C","T5479C","C5481A","A5548C","A5557G","G5565A","C5578A","T5602C","G5619A","A5632T","G5647A","T5684C","A5738G","A5806G","G5839A","A5845G","A5866C","A5957C","T5986C","T6010C","A6023T","A6031T","A6045G","T6134C","T6155C","A6167G","A6168C","-6174A","-6175T","A6179G","-6180C","A6186C","T6187C","A6195G","-6201A","C6204G","-6215G","G6220T","A6234T","T6252C","A6254G","C6255A","G6277A","T6285A","T6301C","A6311C","A6327G","A6330G","A6335G","G6336A","-6337A","-6339C","-6340A","T6403A","A6448G","A6464G","A6471C","G6475A","C6501T","G6532A","G6566T","A6568G","A6576G","A6578G","G6611A","C6618A","T6655C","C6667T","A6685G","-6693G","T6694G","T6760C","G6767A","C6777A","C6779A","G6797C","A6799C","-6821A","C6822A","T6823G","-6834A","C6925T","-6986A","-6987A","-6988T","-6989A","-6998T","A7032G","G7065A","A7097C","A7100G","T7105C","T7114C","A7152G","T7162G","A7234G","G7269A","A7275G","A7281C","G7375A","A7428G","G7552A","C7553A","T7609C","T7624C","T7627G","G7633A","T7636A","C7678T","G7688C","G7701A","A7706C","A7710G","G7714A","G7717A","C7742A","A7744G","A7747C","C7755A","G7759T","A7947G","G7956A","A7995G","C8005A","C8044A","G8122A","G8134A","T8235G","G8243T","A8294C","G8323T","G8329A","A8341G","T8348G","A8352C","A8353G","C8415A","T8451C","A8469G","A8472T","A8537C","G8666C","C8684T","T8759G","G8787A","A8851T","A8882G","C8907T","G8917A","A8954G","-9033G","-9040G","C9075T"],"INT":["E11D","R20K","M50I","I101L","I113V","I201V","G283S"],"RT-p51":["D123E","Q197K","E207D","D248N","K277R","R307K","Q334E","A376S","T386P","K390R","E404D"],"RT-p66":["D123E","Q197K","E207D","D248N","K277R","R307K","Q334E","A376S","T386P","K390R","E404D","A466V","S491L","L517I"],"gp120":["-3D","E4N","N5-","K35Q","N57F","E59N","N64S","N105A","N108T","-109A","-110N","-111T","-113N","-114S","-115N","-116S","-117N","-118S","-119T","-120L","-121K","-123D","Q127L","M133T","T134D","V144E","I153L","D183E","K204E","N206T","T216I","A238S","E240G","D241G","I242V","A253T","T255N","S280R","T292E","G293R","D294I","V305I","T308E","Q309K","E315H","K322R","S323K","P326H","D365-","T366-","N369-","-378N","-379N","-380T","-381E","-382S","-383N","K393R","R404K","I415L","T416A","N418S","N433S","N435G","T437S","K474R","Q476P"],"gp41":["M24I","N42S","L84I","Y108Q","D109E","E129Q","R133K","I135L","E136G","Q147K","E148D","A151E","L152F","E215G","R218K","K231R","D247E","V311G","G314W","N331H","L340F"],"nef":["K4R","P25T","I43V","T44S","E65D","E108D","F139L","D149N","Q170L","R192Q"],"p1":["H9N"],"p17":["K28R","S54P","R58Q","Y79F","Q90R","Q116K"],"p2":["S5R","V13L"],"p24":["I2V","H12Y","S44A","T110S","S225G"],"p6":["S14I","S24P","L35Q"],"p7":["K20R","I24L","N27H"],"pro":["K14R","D35E","I36M","P39S","L63H","I72T"],"rev":["T10A","E11D","R17K","R53S","G92R","T93A","G96R"],"tat":["E2D","Y35Q","T58P","S61G","L68I","N80D","G83S"],"vif":["N19S","R37G","R50K","V51I","R93K","Y110H","E117D","Q136P","K158Q","K160R","R181K"],"vpr":["E21D","S41A","I70T","I84T","R85P","A93S","S96P"],"vpu":["I9L","V14I","V26A","K44R","M71V","D78N","N80D"]},"labels":{"aa":"INT: E11D, R20K, M50I, I101L, I113V, I201V, G283S; RT-p51: D123E, Q197K, E207D, D248N, K277R, R307K, Q334E, A376S, T386P, K390R, E404D; RT-p66: D123E, Q197K, E207D, D248N, K277R, R307K, Q334E, A376S, T386P, K390R, E404D, A466V, S491L, L517I; gp120: -3D, E4N, N5-, K35Q, N57F, E59N, N64S, N105A, N108T, -109A, -110N, -111T, -113N, -114S, -115N, -116S, -117N, -118S, -119T, -120L, -121K, -123D, Q127L, M133T, T134D, V144E, I153L, D183E, K204E, N206T, T216I, A238S, E240G, D241G, I242V, A253T, T255N, S280R, T292E, G293R, D294I, V305I, T308E, Q309K, E315H, K322R, S323K, P326H, D365-, T366-, N369-, -378N, -379N, -380T, -381E, -382S, -383N, K393R, R404K, I415L, T416A, N418S, N433S, N435G, T437S, K474R, Q476P; gp41: M24I, N42S, L84I, Y108Q, D109E, E129Q, R133K, I135L, E136G, Q147K, E148D, A151E, L152F, E215G, R218K, K231R, D247E, V311G, G314W, N331H, L340F; nef: K4R, P25T, I43V, T44S, E65D, E108D, F139L, D149N, Q170L, R192Q; p1: H9N; p17: K28R, S54P, R58Q, Y79F, Q90R, Q116K; p2: S5R, V13L; p24: I2V, H12Y, S44A, T110S, S225G; p6: S14I, S24P, L35Q; p7: K20R, I24L, N27H; pro: K14R, D35E, I36M, P39S, L63H, I72T; rev: T10A, E11D, R17K, R53S, G92R, T93A, G96R; tat: E2D, Y35Q, T58P, S61G, L68I, N80D, G83S; vif: N19S, R37G, R50K, V51I, R93K, Y110H, E117D, Q136P, K158Q, K160R, R181K; vpr: E21D, S41A, I70T, I84T, R85P, A93S, S96P; vpu: I9L, V14I, V26A, K44R, M71V, D78N, 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N17T, L45I, I72V, F100Y, T119P, I161S; RT-p51: M39T, C162H, G196E, E207Q, K211R, A286T, Q334L, M357K, L377M, S379G; RT-p66: M39T, C162H, G196E, E207Q, K211R, A286T, T297A, Q334L, M357K, L377M, S379G, R461K, L469I, Q483H, S491P, K527N, K530R; gp120: -3T, E4G, A37V, V57W, E59K, K69N, N105S, -107K, N108E, -123P, G124D, V137L, N157-, N159G, S160T, N161G, -162N, K204S, K212R, E240G, D251N, S280T, I281L, T308S, E315G, K318R, H324Y, P326H, -328A, K329-, S336P, G361W, N364S, -367E, -368F, -370D, -371S, E401G, N432Q, -436T, T437N, N446E, K448R, Q476R, K479Q; gp41: M54L, Y108Q, D109E, E110Q, E113Q, S125N, E129N, E130D, R133K, I135L, E148D, A156T, D163N, S192A, N195R, I210L, A243S, I270T, R277G, E280Q, S293L, L345Q; nef: G3S, K4N, I16V, M20I, T23A, A27E, E28G, G29-, E38G, S45N, A50D, I101T, K104Q, Q107K, Q170L, E176G, R178G, V180T, K184V, K204Q; p17: K18R, I35V, Y79F, H89Q, V94I, T115K, Q117P, A118V, K122Q; p2: N9S, T12V, V13L; p24: L6P, V11I, H12Y, S33N, S44A, R154K; p6: S24P, L35Q, A39T; p7: S4G, R10K, I12T, I24L, K26R; pro: K14G; rev: T10E, E11D, L13I, R17K, Y28P, S61E, E68A, E95G, G98A, E111A; tat: R29K, Y35H, T58P, P59H, L68P, I74T; vif: G37R, F39C, E60K, A62D, R93K, I124L, K128R, K158Q, Q167K, M189I; vpr: E17Q, I84L, V89I; vpu: D3Y, G72E"}}},{"name":"MG365768","node_attrs":{"div":0.13815,"accession":"MG365768","clade_membership":{"value":"F1"},"country":{"value":"BR"},"date":{"value":2011.0},"Strain_name":{"value":"11BRRJPR90"},"LANL_subtype":{"value":"F1"}},"branch_attrs":{"mutations":{"nuc":["T95C","G206A","A263T","-304T","-305T","A317G","G455A","T473C","T495C","A497G","C531T","A541C","A562G","A579C","A604T","A607G","G629A","G641A","G651A","C662A","A663G","A680G","C684A","A697C","C698A","A700C","A740G","G743A","T771G","T773C","A810G","T852A","G935A","C944T","A945G","C947T","T1040C","T1064G","C1094T","G1173A","T1174C","A1190C","C1235T","A1271G","G1277A","G1278A","G1279A","A1293T","C1362T","G1388A","A1442G","A1445G","A1449C","G1455A","A1586G","G1588A","T1681C","A1687G","G1691A","C1692A","T1728A","G1731A","-1746C","-1747C","-1748A","C1749T","T1754-","C1755-","C1756-","G1784A","A1819G","C1833A","G1848A","G1852A","A1861G","C1865T","T1954G","C1985A","A1993T","A2012G","G2038A","G2074A","A2197G","A2212G","A2215G","T2237A","A2241G","C2263T","A2293G","G2311A","G2422A","C2503T","A2560G","A2578G","C2596T","A2612G","A2616G","G2686A","A2716G","A2728G","A2764G","C2839A","A2884G","T2983C","T3002C","A3028G","G3058A","A3080C","G3085A","G3094A","G3169A","A3220T","G3307T","G3340A","C3346A","A3448G","A3481G","A3490G","G3494A","G3523A","G3529A","C3567T","G3574A","A3583G","T3644A","T3668C","A3761G","A3770G","G3796A","G3805A","A3808T","A3825G","T3853C","T3909A","A3937G","T3943C","C4047A","C4058A","G4145A","T4152C","C4180T","G4183A","A4225G","C4321T","G4388T","G4475A","G4549A","A4564G","G4622A","G4637A","G4673A","A4692C","T4702A","T4703C","C4715T","G4719C","T4742C","A4765G","A4769T","C4827T","A4845G","A4850G","G4871C","A4878G","C4898T","A4911C","T4912G","T4914C","T4932A","A4952T","C4965T","G4969A","A5015G","T5043C","G5049T","T5072C","C5115T","A5121G","G5137A","A5187C","G5212A","A5225G","C5237T","G5257A","T5260C","A5293G","T5294C","C5306T","T5336A","T5384C","T5403G","C5445A","T5482C","A5491G","G5496A","G5538A","C5542T","G5543C","A5548G","T5567A","A5568C","C5584T","C5612T","T5614A","A5626C","C5636T","T5641C","A5644G","A5652G","C5663T","G5668A","G5671A","G5673A","A5699G","T5727C","G5730T","A5738G","G5747T","A5751G","A5793T","G5802A","A5806G","G5839A","A5856G","-5861G","A5866C","C5884T","C5916A","C5917G","T5920C","C5929T","T5944C","A5958G","T5980C","T6010C","G6020A","A6022G","A6065G","T6085C","C6115T","T6134A","T6151G","G6170T","C6172G","-6174G","-6175T","-6180C","T6187C","G6188A","C6190A","C6196A","-6198A","A6200G","C6209T","G6220T","C6221T","G6227A","C6233A","T6241C","A6251G","T6252C","G6267C","G6274A","C6278A","A6304G","A6320C","T6337C","-6340T","T6341A","C6343T","G6392A","T6393C","A6430G","G6451A","G6458A","T6460C","A6465C","C6469T","G6490C","G6573A","G6611A","A6616G","C6618A","A6628G","G6638C","C6693G","A6706G","G6716A","G6754A","T6769C","C6777T","G6793A","G6809A","A6818G","-6821G","-6834T","A6854G","C6856A","T6857C","G6871A","T6932G","T6946C","-6989A","-6990A","-6991C","-6992A","-6993C","-6994T","-6995G","-6996A","-6997T","-6998A","-6999A","-7000G","-7001A","-7002A","G7004A","-7005T","G7026A","A7036G","T7039C","G7040A","A7060G","A7095G","C7127A","T7147C","A7152G","T7153A","G7160T","A7161G","T7162C","A7219G","G7256A","G7269C","A7297C","G7309C","T7325C","C7328A","T7359G","G7364T","C7365T","G7369C","A7373G","A7376G","T7444C","C7463A","A7504G","A7533G","G7534A","C7625T","G7628A","G7630T","G7631A","A7632T","C7678T","T7690A","G7709C","G7720A","A7722G","A7732C","G7759A","A7782G","C7792A","A7818G","A7921G","A7929C","A8019G","A8029C","C8092A","C8103T","G8109A","G8130A","C8145T","C8146T","T8153C","A8154T","T8155C","G8170A","C8171T","A8172T","A8180G","C8221T","A8222G","C8223T","A8228G","G8234A","T8235C","G8255A","G8354A","A8364C","T8375G","C8386A","T8387A","A8390T","G8432A","G8441A","G8479A","T8492C","A8519G","G8534A","C8552T","C8651T","A8652G","G8654T","A8656G","A8662G","T8675C","A8701T","A8719G","T8770A","C8810T","C8835T","G8868C","A8869C","A8892C","C8904A","G8905C","C8978A","C8989T","A8991G","G8994C","A9007G","-9009G","A9019T","C9028T","C9068T","T9074-","C9075-","G9076-","C9077-","C9078-","T9079-","G9080-","T9081-","A9082-","C9083-","T9084-","G9085-","G9086-","G9087-","T9088-","C9089-","T9090-","C9091-","T9092-","C9093-","T9094-","A9095-","G9096-","T9097-","T9098-","A9099-","G9100-","C9102G","A9106-","T9107-","T9108-","T9109-","G9110-","A9111-","G9112-","C9113-","C9114-","T9115-","G9116-","G9117-","G9118-","A9119-","G9120-","C9121-","T9122-","C9123-","T9124-","C9125-","T9126-","G9127-","G9128-","C9129-","T9130-","A9131-","G9132-","C9133-","T9134-","A9135-","G9136-","G9137-","G9138-","A9139-","A9140-","C9141-","C9142-","C9143-","A9144-"],"INT":["E11D","N17S","L45Q","A91E","Q95K","A124T","V126A","A205S","V234I","G283S","D288N"],"RT-p51":["S48T","K49R","T173A","K174R","D248E","A297T","I329L","E404D"],"RT-p66":["S48T","K49R","T173A","K174R","D248E","I329L","E404D","V467I","S491L","L517I","I556V","I559V"],"gp120":["N1S","-3A","E4D","T21K","K35R","V56M","V57L","N71D","L94I","-107S","-109A","-110T","-111N","-112T","-113N","-114S","E122-","A125T","Q127K","M133A","R138T","Q142K","I156L","S160A","N161T","-162E","V180T","D202N","K204T","K212N","A253T","T255N","E262Q","S280R","A288T","T308V","A319T","K322G","S323A","P326L","N334E","S335P","S360A","D365N","-367D","-368K","-370I","-371T","T385-","R391Q","V396I","N414S","L425I","N433R","-436C","V468I","K472T","E481D"],"gp41":["F8L","L9I","M19R","A21L","M24V","T25A","K77R","D109N","E110M","E136Q","N140S","E143D","N160S","D163E","K172R","H209P","N239S","L242F","F263L","A267V","R269K","R276K","A281V","Y284L","Q290L","S293G","T307V","I309V","V311T","V318I"],"nef":["S8R","A15E","S46N","K104D","K105R","Q107R","Y120F","N126S","F143Y","E176P","K184Q","R188T"],"p17":["S54P","P66S","Q69P","K76R","I82L","Q90L","K91R","E106K","K110E","Q117K","D121A","K122T"],"p2":["N9H","A11-"],"p24":["S14A","I27V","S41T","M68I","T72A","V148T","G183N","T188S"],"p6":["L1P","N3S","P5T","F17I","G18R","N47S","Q52K"],"p7":["R41K"],"pro":["T12K","G17E","L63I","E65D","I72V"],"rev":["S8N","T10Q","Y18T","S61R","H82N","P100S","I102T","S103P","A108I","E111G"],"tat":["L3P","D9E","W36R","T39A","R56S","T58A","I64N","P70S","I74L"],"vif":["M29I","K36Q","F39Y","E45Q","E60G","E61D","I87V","R95S","I98V","I109R","Y110H","S116T","K122N","H127Y","A155S","P177S","K179E","R184K"],"vpr":["A4V","E6G","N28T","S41G","H45Y","I63M","H77Q"],"vpu":["S2L","D3N","I7L","A10V","I13V","A19V","V21I","V22I","K31R","R41S","K44R","R47I","M71V","D78N"]},"labels":{"aa":"INT: E11D, N17S, L45Q, A91E, Q95K, A124T, V126A, A205S, V234I, G283S, D288N; RT-p51: S48T, K49R, T173A, K174R, D248E, A297T, I329L, E404D; RT-p66: S48T, K49R, T173A, K174R, D248E, I329L, E404D, V467I, S491L, L517I, I556V, I559V; gp120: N1S, -3A, E4D, T21K, K35R, V56M, V57L, N71D, L94I, -107S, -109A, -110T, -111N, -112T, -113N, -114S, E122-, A125T, Q127K, M133A, R138T, Q142K, I156L, S160A, N161T, -162E, V180T, D202N, K204T, K212N, A253T, T255N, E262Q, S280R, A288T, T308V, A319T, K322G, S323A, P326L, N334E, S335P, S360A, D365N, -367D, -368K, -370I, -371T, T385-, R391Q, V396I, N414S, L425I, N433R, -436C, V468I, K472T, E481D; gp41: F8L, L9I, M19R, A21L, M24V, T25A, K77R, D109N, E110M, E136Q, N140S, E143D, N160S, D163E, K172R, H209P, N239S, L242F, F263L, A267V, R269K, R276K, A281V, Y284L, Q290L, S293G, T307V, I309V, V311T, V318I; nef: S8R, A15E, S46N, K104D, K105R, Q107R, Y120F, N126S, F143Y, E176P, K184Q, R188T; p17: S54P, P66S, Q69P, K76R, I82L, Q90L, K91R, E106K, K110E, Q117K, D121A, K122T; 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L84I, I135V, G163H, F181L, T206S, I218T, I251L, D270H; RT-p51: E6N, K20R, T35K, T39A, D121Y, K122E, I142V, C162Y, T173V, T200A, I202V, K275Q, A297T, G333E, Q334H, M357I, L377M, I382L, K390R; RT-p66: E6N, K20R, T35K, T39A, D121Y, K122E, I142V, C162Y, T173V, T200A, I202V, K275Q, A297T, G333E, Q334H, M357I, L377M, I382L, K390R, T470M, Q480H, E492K, I559V; gp120: V10I, K18R, N52S, V56I, V57E, E59G, D66N, N71D, T78E, N102S, -107I, N108Y, -109K, -110N, -112T, -114T, -115H, -116N, -117S, -118T, -119L, -120K, -121L, -123P, I126V, H145Y, K150R, N159G, N161G, -162E, H167N, K199R, D202N, K212R, E240G, I249M, N272S, S278G, K300Q, T308I, E315T, Q316R, K318R, H324Y, P326D, -328N, K329T, T330K, -367V, -368S, -369N, -370D, -371T, M398L, N432S, N433S, -436E, V468I, K479Q; gp41: L7V, F8L, T25A, R46K, G83S, S101T, N105S, Q108Y, D109N, E110D, D113E, E129D, R133K, I135L, E136Q, N140S, K144R, Q147K, A151E, L152F, A156T, D163N, N166S, V187F, A189T, V197A, L204V, T208I, I210T, S212N, D217G, K231N, D232G, A243T, L244V, H259Q, F263L, A267V, A268V, D272E, S293G, K297R, I319L, V329F, L345I; nef: I16V, T23A, P24R, A26R, G29R, E38S, R39N, N51T, L85M, Q125G, D149S, K155E, N157T, S169N, Q182R, K184E, Y203F, D205S; p17: A15Q, D47N, G62S, S72T, Y79F, A83V, K95R, E106K, K110E, Q112K, D121A; p2: T12V, V13L; p24: L6I, S14P, L15I, I27V, S44A, S225G; p6: L1F, A12E, E19-, I21K, T22I, P23T, S24P, P25S, -26P, K27R; p7: K3R, Q9P, R11K; pro: K20R, D35E, P39Q, I93L; rev: S8R, K14R, V16I, R17K, I52V, S61D, L78I, H82N, I83L, Q91E, A108S, E111G; tat: L3P, Q17K, T19S, S62N, V69I, K71E, P73S, S75P, A77T, T82A; vif: F44Y, E61K, K63E, L64I, I66V, D78E, G101D, I109L, Q167K; vpr: H45Y, N48G, I60L, V89G; vpu: Y3N, A11E, V21I, Y27F, R35K, 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N183A; p6: P5T, F15L, R16M, T23A, Q30P, K31R; p7: M1V, N8P, Q9R, R11T, I12-, K47L; pro: L10I, K20R, K43T, F53I, I54V, K57R, V82A; rev: A15T, I59F, S62A, L67R, N84S, G90E, P107L; tat: E2D, I39T, S61N, L74I, G79R; vif: S95R, S116A, N122H, T155A, V166L, K181T; vpr: Q8H, S28T, P37V, I61T, I63T, A93S; vpu: S8G, V26A, I28L, L33F, K38R, 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N9H; p17: I34L, E93D, Y132F; p2: I13V; p24: E71D, E180D; p6: S3T, E20G, Q26R, Q30L, K31T; p7: R11K, I12T, I24V, K26R, D48E; pro: L10I, D35E, M46I, K55R, K70R, A71V, I85V, L90M, I93M; rev: E10Q, R17S, T32K, R53C, E54Q, S61R, D88N, E94D, G96R, S106H, V109I, E111G; tat: K29L, F32Y, R56P, I64L, H78Q; vif: M29K, F39V, T47N, H48N, R63K, D78E, N122H, K158R, V166I, Q178R, M189I; vpr: P5S, E17Q, S28G, P37I, Y45H, E58K, Q77R, T84N, R85P; vpu: R41N, E44K, 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K18R, R30K, V82I, K91R, A119E, N124K, S125G, Q127P; p2: N9K, -12V; p24: I6L, A14P, S16T, L83V, H87Q, M96I, S120G, K203R, G225S; p6: P5T, I21K, Q30P, D32E, *50W, S51L; p7: I12V, K26R; pro: L10M, K14R, H69Q; rev: D9E, P31S, G65D, L103R, S106H, P107T, A108T; tat: R7K, T23N, Y26F, F32Y, V36A, K40T, R57K, S70P, P77L, K85E, P87S; vif: G37R, K63E, I66V, W70K, S95H, Y110H, H127R, S130R, I159R, K176E, S186N; vpr: Q3R, T49N, I63T; vpu: Q2T, L7S, A16G, S24T, F27L, L34R, R35K, Q36E, R37K, K38R, D40E, D44N, R47A, M67R, 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p7: R41K; vif: I31T; vpu: L64Y"}},"children":[{"name":"KJ671535","node_attrs":{"div":0.138,"accession":"KJ671535","clade_membership":{"value":"CRF72_BF1"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_MG004"},"LANL_subtype":{"value":"CRF72_BF1"}},"branch_attrs":{"mutations":{"nuc":["T45C","A50G","A66-","A67-","T154C","C161T","G167A","G407A","A410G","A455G","C456T","G508A","A562G","G579A","A599G","A686G","G716A","C749G","A815G","G818A","G821A","G822T","A833C","T852G","A932G","T988C","T992G","T1013A","G1019A","T1040C","A1089G","T1100C","C1105A","G1192A","A1205G","G1313A","A1329T","T1344A","A1359T","T1403C","G1419A","A1449C","A1474G","A1475G","C1556A","T1559C","A1562G","A1567G","A1619T","G1640A","C1670T","G1673A","T1676C","C1714A","T1722C","A1765G","A1770G","A1771G","G1773A","C1826T","A1968G","G2074A","C2098T","C2105T","A2154G","G2155A","A2212G","G2224A","A2311G","A2380G","G2392A","A2419G","T2425C","T2458C","T2464C","C2467T","C2575T","T2597C","T2602G","T2659C","T2737G","G2837A","C2839T","C2845A","A2846T","G2914A","T3049C","C3067T","G3127T","A3130G","A3205G","G3307A","G3431T","A3449T","A3450T","G3477A","C3492T","T3545A","A3571G","A3607C","A3674C","T3695A","G3755A","A3770G","G3866A","A3877G","C3892A","G3907A","A4057G","A4107C","G4174A","C4195T","A4243G","A4303G","A4376G","A4424G","G4495A","A4531G","A4535C","C4543G","T4678C","C4690T","G4735A","G4835T","A4869C","G4870A","C4871T","T4976A","A4988G","G5024A","A5033C","C5034T","C5038T","G5040A","A5046C","T5062G","A5119G","G5131A","A5137G","A5159G","T5170C","A5173G","G5179A","T5197C","G5212A","T5214C","C5227T","T5228C","A5248G","G5257A","A5277T","A5285T","C5306T","A5335G","T5354C","G5437C","A5446C","C5451T","A5462G","G5463A","T5475C","A5480T","C5490T","T5492C","A5545C","A5547C","G5557C","G5565A","C5569A","T5577G","T5584C","G5599A","C5602T","A5607G","C5612A","T5617C","T5620G","A5621C","T5626G","A5628G","T5654G","A5710G","A5734C","A5790G","C5827T","A5861-","C5862-","A5863-","A5866C","A5869C","T5932C","T5951C","T6024A","G6028A","G6029A","A6031G","A6095G","T6134C","T6160C","C6165G","A6167-","A6168-","T6169-","-6180C","A6185G","A6186C","A6191C","A6192C","A6194C","T6196A","C6198A","-6201G","G6203A","-6205C","-6207T","-6213G","-6214G","G6224A","A6254G","C6278T","A6279T","C6287T","C6293A","T6294C","T6298C","G6303A","A6326G","T6328A","A6330G","A6332G","C6347T","T6358C","G6466A","A6565G","G6575A","A6576G","T6641C","-6688T","-6689A","-6690T","-6691A","-6692C","-6693A","A6695T","C6758T","G6771A","A6786C","T6787A","A6788C","A6790C","A6796G","A6797G","A6806G","A6807G","-6809A","A6812G","C6822A","-6830C","-6831C","-6832C","-6833A","T6835C","A6836G","A6837C","T6838A","C6843T","T6846A","A6848-","A6849-","A6850-","A6854G","T6888C","A6913G","C6919T","A6945C","-6947G","-6948G","-6949C","-6950A","-6952A","-6953G","-6954T","-6955G","-6956G","-6957T","-6958C","-6959A","-6960A","-6961T","-6962G","-6963G","-6964C","-6965A","-6966C","-6967T","-6968C","-6969T","-6970C","-6971A","-6972C","-6973T","-6974A","-6975A","-6976T","-6984C","-6985C","-6987C","G6989A","-6990T","-6994T","-7001A","-7002A","A7005G","A7021C","C7084T","A7085G","A7095G","C7101A","G7107C","T7123G","T7144G","T7150G","C7164A","C7201T","A7234G","A7276G","A7279G","A7299G","C7393T","A7398T","C7553A","A7620G","C7625G","A7629C","G7642A","G7660A","A7669G","A7687T","A7689C","A7692T","G7753A","T7801C","A7818G","A7847G","G7862A","C7993G","A8007G","C8010G","A8029G","C8047T","G8070C","G8098A","A8104G","T8156G","C8167T","G8201T","C8202T","G8204A","G8255A","T8277G","C8294A","C8336G","A8341G","G8404A","C8406A","A8408G","T8426C","A8484-","C8485-","-8490T","C8491T","T8505C","C8543A","A8643G","C8666T","C8676T","C8684T","A8701T","G8798T","T8829A","C8831T","T8832C","C8869T","A8870G","G8875A","G8885A","G8888A","C8916G","T8918G","T8923A","G8968-","A8969-","G8970-","T8972-","T8973-","T8974-","C8975-","G8982A","G8983A","A8984-","C8985-","T8986-","T8987-","T8988-","C8989-","C8990-","G8991-","G8995C","G8996T","T9000A"],"INT":["V31I","S39R","K111T","I201V","I217V","N254H"],"RT-p51":["P4S","K20R","D169E","F214L","D248N","D250E","S251C","E344D"],"RT-p66":["P4S","K20R","D169E","F214L","D248N","D250E","S251C","E344D","A446S","K452L","R461K","A466V","L484I","K527Q","S534T","A554T","I559V"],"gp120":["T3D","E4N","K5-","Y33H","V57E","E59K","I81V","T104-","E122-","G124-","T125-","T134A","Q142L","H145Y","L147T","R150K","N159-","N161-","D241S","S263P","I281L","D294A","H302Y","S306N","R307G","N311T","N312H","K318G","K320E","S323Y","T330-","N334D","M345T","K361R","N364T","D365G","-367V","-368V","-370G","-371T","-372L","-373T","-379A","-381I","-382T","-383N","D384G","I411V","N414S","T416N","N418T","N432K","N433D","T437N","K482R"],"gp41":["V24M","Q32L","L84I","K106R","Q108E","D109A","D113E","D129T","E130V","K172R","I182V","V187I","D230E","E235G","S256T","H258R","I281V","W285G","A300F","V301I","V318I","A325G","H331N","L345V"],"nef":["R21K","T48F","C55R","E63D","V85L","I101V","Y120F","E152D","C163S","Q170L","E176L","R178K","M182I","H192E","V194K","D205N"],"p17":["R58K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V31I, S39R, K111T, I201V, I217V, N254H; RT-p51: P4S, K20R, D169E, F214L, D248N, D250E, S251C, E344D; RT-p66: P4S, K20R, D169E, F214L, D248N, D250E, S251C, E344D, A446S, K452L, R461K, A466V, L484I, K527Q, S534T, A554T, I559V; gp120: T3D, E4N, K5-, Y33H, V57E, E59K, I81V, T104-, E122-, G124-, T125-, T134A, Q142L, H145Y, L147T, R150K, N159-, N161-, D241S, S263P, I281L, D294A, H302Y, S306N, R307G, N311T, N312H, K318G, K320E, S323Y, T330-, N334D, M345T, K361R, N364T, D365G, -367V, -368V, -370G, -371T, -372L, -373T, -379A, -381I, -382T, -383N, D384G, I411V, N414S, T416N, N418T, N432K, N433D, T437N, K482R; gp41: V24M, Q32L, L84I, K106R, Q108E, D109A, D113E, D129T, E130V, K172R, I182V, V187I, D230E, E235G, S256T, H258R, I281V, W285G, A300F, V301I, V318I, A325G, H331N, L345V; nef: R21K, T48F, C55R, E63D, V85L, I101V, Y120F, E152D, C163S, Q170L, E176L, R178K, M182I, H192E, V194K, D205N; p17: R58K, K76R, V82I; p2: N9H; p24: I6M, A31S, S41A, V86A, H87Q, M96I, S120G, P125Q, R154K, T200S, L205M, T210S, V230I; p6: A12E, F15L, E29G, K31G, D32N, *50W; p7: K3R, S4G, K34R; pro: K57R; rev: E10D, N11T, K14N, R17K, L21R, Q49E, T54K, N61D, P67S, Q74H, D84N, N86D, L103R, P107S; tat: A21P, N24P, K29R, Q35L, I39T, R57H, D61H, H65N, S70P; vif: A35V, R50K, Q83H, S95H, S130R, A151V, A152T, I154L, I159R, Q178R, G182D, K184R; vpr: T19A, V37A, I61L, Q77R; vpu: Y5A, L7V, A16G, R35G, I43L, V65M, 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D78N"}}}]}]}]},{"name":"results/subtype_trees/CRF66_BF1.nwk","node_attrs":{"div":0.10112,"clade_membership":{"value":"CRF66_BF1"}},"branch_attrs":{"mutations":{"nuc":["C160T","T377A","G407A","C482T","T495G","A507C","C510A","C583T","G595T","A619G","A620T","A645C","G656A","A669C","A672C","G678C","C700A","A705-","A706-","C707-","A708-","C710-","G712-","A715-","C722T","G770A","A869G","A887G","C902T","G1424A","A1492C","G1673A","C1775A","T1986C","A2026G","A2038G","T2080G","C2083T","C2098A","A2131G","G2155A","T3059A","C3322T","C3499T","A3601C","A3608G","G3766A","A3787G","A3805G","A4076C","A4084G","G4150A","G4237A","G4354A","A4407G","C4471T","G4475C","A4498T","C4525A","A4642G","C4643A","A4652C","T4665C","C4674T","T4678G","T4679G","A4683G","A4684G","C4691T","C4820T","C4902T","A4951G","A5049C","G5087A","A5159G","T5197G","G5225A","T5354C","A5385C","A5421G","A5432G","T5487C","C5548G","C5563G","C5567A","C5569A","C5612A","T5620G","T5627C","T5686C","G5781A","T5828A","A5842G","C5958A","G6037A","A6044C","C6052T","A6195G","-6211C","-6212C","-6213T","-6214G","-6217A","C6278A","A6279T","T6289C","C6322T","A6324G","C6340T","A6376C","G6478A","T6545C","C6745T","G6767A","A6776G","C6777A","A6788G","A6790C","C6824T","A6937G","-6948A","-6949C","-6950A","C7016A","A7152C","C7171T","T7411A","A7492G","C7690G","G7717A","G7753A","T7852C","C7898A","A7912T","G7937A","C7938G","G7947A","A7977G","A7988C","G7989A","A7992G","T8020C","A8032T","A8036T","A8104G","C8106T","G8107A","A8118G","G8130A","G8170A","A8227C","T8232C","A8248T","G8255A","C8265T","T8266A","G8269A","C8294-","G8304-","G8373-","A8409G","C8411T","C8413A","T8414A","T8440C","A8494C","C8543T","G8882A","A8909G","T8913C","T8915G","C8916A","A8917G","T8918A","C8928A","C8934A","T8935A","G8936A","A8947T","A8952C","C8967A","-8971A","T8974G","G9007A","A9009-","T9014-","T9019A","G9026A","G9040T","A9041C","G9042A","T9075C"],"INT":["I101L","M154I","K211R","V234L","E256D"],"RT-p51":["A173T","S322T"],"RT-p66":["A173T","S322T","I505V"],"gp120":["T35K","Q142M","N157S","V305I","T308E","N311Y","H324Y","L388I","N433T"],"gp41":["D129E","A212S","G215E","E225G","R229Q","D230G","I245F","A268I","V310A","V318I","A321V"],"nef":["T23A","P24E","V33A","H192R","V194I","L198K","Y202F","K204Q"],"p17":["D14E","S54A","Q59K","A83V","C87F","Q90R","K95S","I104L","K112Q","K113Q","A115Q","T122K","N124-","S125-","S126-","Q127-"],"p6":["D32E"],"p7":["Q9P"],"rev":["L18I","P28Y","S30K","E47A","W58R","S61G","T62S","Y63F","E68A","S86D","E87K","A108T"],"tat":["K19R","D61G","Q63E","T64N","H65N","T74I","P77A","D80N"],"vif":["N19R","K22N","Y27H","H30Y","I31R","K33G","N122S","T155P"],"vpr":["T19A","G41S","S94R"],"vpu":["Q5E","E66D","-74D"]},"labels":{"aa":"INT: I101L, M154I, K211R, V234L, E256D; RT-p51: A173T, S322T; RT-p66: A173T, S322T, I505V; gp120: T35K, Q142M, N157S, V305I, T308E, N311Y, H324Y, L388I, N433T; gp41: D129E, A212S, G215E, E225G, R229Q, D230G, I245F, A268I, V310A, V318I, A321V; nef: T23A, P24E, V33A, H192R, V194I, L198K, Y202F, K204Q; p17: D14E, S54A, Q59K, A83V, C87F, Q90R, K95S, I104L, K112Q, K113Q, A115Q, T122K, N124-, S125-, S126-, Q127-; p6: D32E; p7: Q9P; rev: L18I, P28Y, S30K, E47A, W58R, S61G, T62S, Y63F, E68A, S86D, E87K, A108T; tat: K19R, D61G, Q63E, T64N, H65N, T74I, P77A, D80N; vif: N19R, K22N, Y27H, H30Y, I31R, K33G, N122S, T155P; vpr: T19A, G41S, S94R; vpu: Q5E, E66D, -74D","clade":"CRF66_BF1"}},"children":[{"name":"CRF66_BF1_NODE_0000001","node_attrs":{"div":0.10909,"clade_membership":{"value":"CRF66_BF1"}},"branch_attrs":{"mutations":{"nuc":["A1242G","C1243T","C2063A","C2613T","G4870A","T4988A","C5213A","A5233G","T5237C","A5447C","A5621T","G5626T","T5654C","A5718G","G6086A","-6172C","-6201C","C6202A","-6204G","C6222A","A6786G","C6822T","T6826A","T6888C","-6947A","-6952A","-6955A","-6957T","-6959A","-6960A","-6961T","-6995G","-6997A","-6998T","-6999C","-7000T","-7001A","-7002A","A7025C","T7489C","C7931A","G8050A","G8245A","C8412G","A8414G","T8851A","G8905C"],"gp120":["-113N","-114S","-115T","-117S","-119L","-121E","-123Q","N161S","S162N","E315K","M345T","D365N","-368L","-371T","-372E","-373S"],"gp41":["D113N"],"nef":["E176P","R188T"],"p2":["T10-"],"p24":["I6L","T171V"],"pro":["L89M"],"rev":["A68T"],"tat":["N24T"],"vif":["S95N"],"vpr":["P37I","Y45H"],"vpu":["E5V"]},"labels":{"aa":"gp120: -113N, -114S, -115T, -117S, -119L, -121E, -123Q, N161S, S162N, 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D6E, V72I, S119T, I268S; RT-p51: T173R, A200T, T369A, R390K, W410*; RT-p66: T173R, A200T, T369A, L377V, R390K, W410*, S468T, Q480E, D488E, S491P, K512Q, L517V; gp120: A2D, T3A, E4T, L6E, V56I, N64H, T104S, N105S, -106V, -107N, -109G, -110T, -111T, -112P, -116P, -118T, -120Y, M142L, R150K, I156L, N159D, N160S, N162Q, D202N, K204T, K212R, I249Y, A253T, T255N, E262Q, C268R, H280Q, A291T, D294E, R307G, E308P, Y311R, N312E, -319K, K320E, K322-, N327-, K332Q, -367I, -370S, -374N, -384D, R404K, N414K, T433I, N434D; gp41: M4V, G13A, K77Q, Q80R, Q119E, E129Q, N160S, S192A, N239S, A243S, H258R, E272R, R276Q, S293I, S302N, T306A, R334T; nef: A15T, R19K, M20L, A23D, E24G, I43L, A50S, A53P, E63D, V85I, L87F, H89F, Q107R, R178K, K182V, F191R, I194L; p1: H9R; p17: E12K, R15N, R22G, I34L, Y79F, T81A, R90K, K91H, I92V, Q112K, Q113S, K114Q; p2: T8N, N9T, A11-, -12T; p24: V27I, E180D, V191I; p6: P5T, Q30K, L35Q, A39V; p7: K20R, R41K; pro: D60E, L63T, I64L, I72T, I93L; rev: S8N, K30E, E32Q, I52V, I55L, G61I, G90E, Q95E, T108A, E111D; tat: R7K, Y26H, F32Y, S68P, Q76R, R78P; vif: H27Y, K36T, F39L, R41K, K63I, T74P, R92K, R93G, N101T, I128R, I154V, Q178R; vpr: S41G, A55T, I60L, I63T, A89G; vpu: L7S, A15V, L27I, E58D, A63T, D74H, 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-12S; p24: V11I, A14T, D187E, G208A, T210S; p6: P5T, S24L, D32N, L35Q; p7: S4G, K7Q, P9Q, I12M, E21A, K26R, R29K, R52N, A54N; pro: H69Y; rev: K14R, I18T, R39K, G61E, F63Y, N86K; tat: T23N, N65H; vif: I31V, R37K, A62E, N101T, S122N, I128R, R132S, T151V, I154R, Q178R, T188S; vpr: Y15F, E25D, E58V, A59V, I60L, I63S, R94S; vpu: L4V, V5T, I18L, D44E, R47G, D74H, D78V, V79I"}}}]}]},{"name":"CRF66_BF1_NODE_0000003","node_attrs":{"div":0.10402,"clade_membership":{"value":"CRF66_BF1"}},"branch_attrs":{"mutations":{"nuc":["T153C","T159C","G167A","G354A","T534G","G1016A","T1403C","A1607G","A1700G","A1712G","G1720T","A1733G","C1960T","G2027A","A2241G","C2296T","A2713G","C2885T","A2925G","A3097T","A3107T","A3130C","G3211A","C3275T","G3529A","C3610A","T4405C","C4883T","C5019T","T5062G","C5168T","T5170A","T5439G","A5556G","T5584C","T5731A","A5742G","T5826C","C5827G","A6020G","C6087A","A6176G","A6177-","G6179A","C6198A","C6469T","A6508G","A6544G","G6547A","G6572C","C6670T","-6697A","-6698C","-6699A","-6700G","-6702T","A6785T","A6820G","G6936A","C7006A","G7026A","T7751C","G7862A","G8285-","C8286-","T8287-","A8288-","T8289-","T8290-","C8291-","T8292-","C8293-","A8295-","C8296-","A8297-","T8298-","A8299-","C8300-","C8301-","T8302-","A8303-","A8305-","T8371-","A8503C","A8584T","T8829A","C8868A","G8871C","A8874G","T8887A","G8991A"],"RT-p51":["K49R","K277R","T338S"],"RT-p66":["K49R","K277R","T338S"],"gp120":["T78E","E240Q","R391K"],"gp41":["E137Q","V187I","R276H","A328-","I329-","L330-","H331-","I332-","P333-","R334-"],"nef":["Y81F","V85F","C163S","Q170L","D177H","R178G","F191L"],"p17":["V7I","S67A","L75F"],"p6":["S14I"],"p7":["S4G"],"pro":["L63P","V77I"],"rev":["K14R"],"tat":["S70P"],"vif":["E134D","T151A","I159R"],"vpu":["L42I"]},"labels":{"aa":"RT-p51: K49R, K277R, T338S; RT-p66: K49R, K277R, T338S; gp120: T78E, E240Q, R391K; gp41: E137Q, V187I, R276H, A328-, I329-, L330-, H331-, I332-, P333-, R334-; nef: Y81F, V85F, C163S, Q170L, D177H, R178G, F191L; p17: V7I, S67A, L75F; p6: S14I; p7: S4G; pro: L63P, V77I; rev: K14R; tat: S70P; vif: E134D, T151A, I159R; vpu: L42I"}},"children":[{"name":"OK011547","node_attrs":{"div":0.13426,"accession":"OK011547","clade_membership":{"value":"CRF66_BF1"},"country":{"value":"ES"},"date":{"value":2011.0},"Strain_name":{"value":"PV623909"},"LANL_subtype":{"value":"CRF66_BF1"}},"branch_attrs":{"mutations":{"nuc":["T201C","G224A","A304C","A305T","G369A","G379A","A380T","A388G","T396C","A399G","G401C","G424A","A435C","A499T","C558T","G579A","T595G","T596G","A604G","A606G","A609G","G614T","G677A","A689G","G818A","C871G","A903G","T992G","G1019A","T1046A","G1290A","A1418G","A1450G","-1455T","A1464C","A1474G","G1495A","A1499G","A1500G","T1501C","G1503A","A1525G","A1565G","G1588A","C1613T","C1656A","G1731A","T1741C","T1754G","G1848A","C1903T","G2008A","G2023A","A2075C","G2134A","T2269C","A2311G","A2380G","A2389G","C2452T","G2470A","C2485T","C2488A","G2665A","G2683A","T2740C","G2951A","C3095A","G3098A","G3099A","G3100T","T3121C","T3165C","A3192G","G3224A","T3225C","T3292C","G3307C","G3442A","C3475T","G3520A","A3553G","A3619C","T3634C","T3644G","C3712T","A3760G","G3805A","G3859A","A3890T","A3982G","T4039C","C4076A","T4085C","G4294A","C4428T","C4475A","T4670C","G4678A","A4694G","T4701C","G4708A","C4728A","T4826G","G4835T","C4841T","T4842G","A4888C","C4890A","T4969G","A5046C","T5047A","G5143A","G5159A","T5214C","T5260C","T5293C","T5339C","A5355C","C5356T","C5358-","C5359-","A5360-","C5361-","A5362-","G5363-","A5364T","G5370A","A5411G","G5432A","G5433A","A5461C","A5462G","G5463A","C5495A","G5558A","C5614T","G5650T","T5677A","G5737A","G5747T","G5755A","C5763T","A5796C","T5799-","G5802-","-5812G","-5813T","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","G5853A","T5857G","A5865C","A5869T","T5870C","C5884T","G6028A","A6031C","T6046A","C6116T","G6130A","-6170G","-6171C","-6172G","-6173A","-6174A","-6175C","-6177C","T6178A","-6180C","C6181G","A6182C","C6183A","T6184G","A6186G","C6190T","A6192G","T6193C","G6195A","A6197C","C6199A","-6201A","G6203A","-6204G","-6205C","-6207C","C6211G","C6212A","T6213A","C6221G","G6263T","G6277T","T6279A","G6280A","A6282C","C6287A","A6288G","C6289A","A6326G","T6328G","A6330G","T6331C","G6391A","G6425A","A6489G","G6550A","C6586T","G6638T","A6639C","A6640C","-6701T","A6706G","C6717T","T6719C","A6733G","A6742G","G6774A","G6776C","A6781G","A6789G","A6799C","-6809A","A6810G","A6818G","G6821T","T6829C","-6833A","-6834A","A6839G","A6840C","T6876C","T6904C","G6940A","-6947G","-6952A","-6953A","-6954A","-6955A","-6956A","-6957T","-6958T","-6959A","-6960A","-6961T","-6980G","-6981G","-6982C","-6983A","-6984C","-6985A","-6986A","-6987A","-6988T","-6989A","-6990A","T7039G","G7076A","C7078T","A7100G","C7101T","T7105C","A7113G","A7155G","C7170T","T7228C","G7238A","A7306T","G7307C","G7309A","A7315G","C7344A","A7411C","T7432C","A7456G","G7492A","A7504G","A7590G","C7625T","G7627T","G7631A","C7633G","G7690T","G7712C","A7714G","C7792T","T7796A","C7801A","T7876G","A7891G","C7921T","G7938T","C7960A","A8029C","G8030A","C8031G","G8118A","T8164C","T8182C","C8189T","G8204A","A8216G","C8221T","C8223T","T8267G","G8276A","G8279T","C8331T","G8335T","C8336T","T8337C","-8371A","-8373A","A8403C","G8404A","G8407A","C8412G","A8441G","T8477C","G8487T","A8537C","T8594C","A8597T","C8652A","A8656G","G8666A","A8701T","T8864G","A8868G","C8869A","C8904T","G8905A","G8917A","A8922C","G8955A","-9009G","G9011C","C9012G","-9014T","G9015C","G9016C","C9017A","C9018G","G9025T","G9052T"],"INT":["S39C","L101I","T218I","L234I"],"RT-p51":["A286T","Q334N","G335N","M357T","K366R","V377T","E404D"],"RT-p66":["A286T","Q334N","G335N","M357T","K366R","L377T","E404D","L517V"],"gp120":["N1K","E4A","K5N","E59D","N64Q","-106L","-107K","N108E","-123A","V137L","Q141H","M142K","K143T","H145R","N158E","N159G","A191T","K212R","E262S","H280-","I281-","-282Q","-283L","A288V","F289L","R307E","E308Q","N312G","E315N","-319R","K322G","-328N","K329A","L341P","G361E","-367K","-368I","-370G","-371T","-372N","-373N","-374E","I395M","A408T","T416V","N420S","N434S","T439I","E462K"],"gp41":["V2L","A14E","N96S","Q108Y","D110K","E129N","S165T","N166K","I210L","S212I","L242F","A243S","V301I","N305D","T307I","L322V","A325I","G326C","A343V","L344F","L345S"],"nef":["I10K","V11I","R21Q","R22Q","A49S","D54A","E65D","Q104K","K105R","Y120F","D174E","R188Y","R192K","I194L","D205N"],"p1":["H9N"],"p17":["E12K","R15N","K18R","R22G","R30K","I34L","E55V","V82I","F87W","K91E","I92V","E93D","Q115P"],"p2":["N9-","T10S","A11T","-12S","M14L"],"p24":["A47G","T58A","H87Q","M96I","D187N"],"p6":["G18R","I21T"],"p7":["K3R","R10K","I12A","V13I","K20R","R41K"],"pro":["G17E","I93L"],"rev":["A15T","Y28P","K30N","A54E","G61Q","S106P","S112P","T114I"],"tat":["K12R","R19K","K29R","T40K","G61D","I74T","A77S","P84Q"],"vif":["R31K","F39L","R41K","H48N","H80Q","Q83H","S86A","N101T","L102I","I128R","I154Q","S186N"],"vpr":["A19T","T84L","P85W","Q86-","R87-","A89T"],"vpu":["P3S","L7A","A15S","A16V","S24T","D44N","R47I","A50T","D66E"]},"labels":{"aa":"INT: S39C, L101I, T218I, L234I; RT-p51: A286T, Q334N, G335N, M357T, K366R, V377T, E404D; RT-p66: A286T, Q334N, G335N, M357T, K366R, L377T, E404D, L517V; gp120: N1K, E4A, K5N, E59D, N64Q, -106L, -107K, N108E, -123A, V137L, Q141H, M142K, K143T, H145R, N158E, N159G, A191T, K212R, E262S, H280-, I281-, -282Q, -283L, A288V, F289L, R307E, E308Q, N312G, E315N, -319R, K322G, -328N, K329A, L341P, G361E, -367K, -368I, -370G, -371T, -372N, -373N, -374E, I395M, A408T, T416V, N420S, N434S, T439I, E462K; gp41: V2L, A14E, N96S, Q108Y, D110K, E129N, S165T, N166K, I210L, S212I, L242F, A243S, V301I, N305D, T307I, L322V, A325I, G326C, A343V, L344F, L345S; nef: I10K, V11I, R21Q, R22Q, A49S, D54A, E65D, Q104K, K105R, Y120F, D174E, R188Y, R192K, I194L, D205N; p1: H9N; p17: E12K, R15N, K18R, R22G, R30K, I34L, E55V, V82I, F87W, K91E, I92V, E93D, Q115P; p2: N9-, T10S, A11T, -12S, M14L; p24: A47G, T58A, H87Q, M96I, D187N; p6: G18R, I21T; p7: K3R, R10K, I12A, V13I, K20R, R41K; pro: G17E, I93L; rev: A15T, Y28P, K30N, A54E, G61Q, S106P, S112P, T114I; tat: K12R, R19K, K29R, T40K, G61D, I74T, A77S, P84Q; vif: R31K, F39L, R41K, H48N, H80Q, Q83H, S86A, N101T, L102I, I128R, I154Q, S186N; vpr: A19T, T84L, P85W, Q86-, R87-, A89T; vpu: P3S, L7A, A15S, A16V, S24T, D44N, R47I, A50T, 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A66D"}}},{"name":"KJ849771","node_attrs":{"div":0.18531999999999998,"accession":"KJ849771","clade_membership":{"value":"CRF71_BF1"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_PE071"},"LANL_subtype":{"value":"CRF71_BF1"}},"branch_attrs":{"mutations":{"nuc":["G10A","T13C","-22T","-23T","-24T","-25G","-26A","-27G","-28C","-29C","-30T","-31G","-32G","-33G","-34A","-35G","-36C","-37T","-38C","-39T","-41T","-45C","-46A","-47A","-49T","-50A","C54A","A57C","A62G","G66A","-68G","-69C","-70C","-71T","-72C","-73A","-74A","-75T","-76A","-77A","-78A","-79G","-80C","-81T","-82T","-83G","-84C","-85C","-86T","-87T","-88G","-89A","-90G","-91T","-92G","-93C","-94T","-95T","-96C","-97A","G119T","A161T","T200C","C258T","A265G","-305A","A353G","A378C","T396C","T422C","A424G","T479A","A499G","A554G","G579A","G607A","A674T","-712A","C713T","T718C","A730T","C749G","G770A","A774C","G810A","C830T","T852A","C893T","C950T","A959G","A977G","T978G","T1001C","A1010G","C1013T","G1022A","A1073G","C1137T","C1244T","A1278G","G1298A","G1302A","G1313A","T1335C","C1350G","C1351G","C1447A","A1448T","A1449-","-1455G","-1457A","-1458A","-1459C","-1460T","A1461G","T1478C","G1498A","T1514C","C1523T","G1588A","A1592G","A1595G","A1607G","C1610A","T1646C","A1670G","A1694G","G1697A","A1700C","A1701C","T1741C","A1773G","A1781G","C1782A","T1783A","A1819G","G1852A","A1867T","A1980G","G2026A","A2063T","T2116A","A2188C","A2206C","C2211A","A2212T","A2215G","A2241G","C2263T","A2275C","A2344G","C2383T","G2428A","A2459G","G2498A","T2499C","G2509A","G2539A","T2542C","A2557G","T2607A","G2612A","C2626T","C2635A","C2694T","A2699G","G2707A","A2710G","G2714C","T2737C","C2749T","A2761G","T2779G","G2833A","T2935C","C2968T","C2975A","T2983C","T3013C","G3019A","T3049C","T3059A","A3080C","G3100A","G3173A","A3196G","G3221T","C3224T","G3250A","A3268G","A3277G","A3279G","A3316G","C3352T","C3444G","C3445T","A3447G","A3450G","A3451G","T3492C","T3497C","T3505C","C3533A","A3571G","A3583G","C3589T","A3619C","T3668C","A3676G","C3691T","G3694A","G3695A","T3746C","A3772C","A3796G","A3802G","A3805T","C3856T","G3869A","A3890C","G3891A","C3892A","G3925A","G3989A","A4045G","G4057A","C4140T","C4210T","G4267A","T4288C","T4291G","C4525T","G4622A","A4664G","G4677A","T4717A","A4773G","C4774T","T4776A","G4829A","A4845G","A4850G","G4864A","G4865A","G4871T","C4907T","T4912A","A4951G","T4967A","T4976A","C4978A","T4988A","A5061G","T5062G","C5091T","A5134G","A5155G","G5165A","A5166G","G5167T","A5187G","G5212A","T5228C","G5233A","C5237T","G5257A","T5293C","G5385A","A5432G","T5470A","T5472G","T5487C","A5496G","G5548C","C5567A","G5599A","T5616C","T5626A","T5636C","C5651T","A5656C","G5673T","C5688A","A5718G","A5805C","C5833A","C5851T","T5857G","C5862A","G5866A","G5867A","C5869T","G5902A","C5922T","C5958A","G5963A","C5964T","A6025T","A6030G","C6052T","A6059G","T6101A","A6112G","A6131G","T6134C","A6158C","G6167A","-6170G","-6171T","-6172A","A6174G","-6175C","A6177T","-6180C","C6183A","A6185G","A6186G","C6192G","G6195A","G6198A","G6203A","A6204G","G6205C","A6207C","A6208C","-6210G","-6213G","A6215C","T6216C","-6221G","G6225A","T6252G","A6261C","A6263T","A6277G","G6284C","C6293G","G6311A","T6315A","A6316G","C6317G","A6330G","A6333G","A6335-","A6336-","T6337-","A6338-","G6339-","C6340-","G6349A","T6351G","C6361T","G6371A","C6375A","G6379A","T6395A","C6397T","T6457C","A6461G","A6465C","A6475T","A6508G","G6533A","A6544G","C6545T","G6569A","G6572C","A6576G","G6581A","T6582A","A6583G","A6584C","A6589G","T6592C","A6594C","G6605A","T6618A","A6623C","G6634A","A6635G","T6641A","A6648T","G6669A","C6670T","C6717T","G6723A","G6724T","G6725A","A6733T","T6760C","C6766T","C6777A","A6779G","A6781G","T6787G","A6797T","A6798C","C6800A","A6814G","-6830G","-6831A","-6832A","-6835T","T6838G","A6839-","A6840-","A6841-","A6848G","T6849C","T6856G","T6860C","C6862T","G6884A","G6894C","T6895C","G6906C","T6928C","T6952C","-6956T","-6957C","-6959A","-6960A","T6961C","-6962A","-6963G","-6964T","-6965T","-6966C","-6967A","-6968A","-6969A","-6970T","-6971A","-6972T","-6973C","-6980G","-6981G","-6982C","-6990T","-6999C","-7000C","G7004-","A7007-","C7008-","A7036G","A7037T","G7055A","A7089G","A7090T","A7095C","C7124A","T7147A","T7150-","A7151-","A7152-","C7159A","A7161C","A7190G","A7252G","A7299G","T7330G","G7390A","T7432C","T7433C","C7489T","G7492A","A7589T","A7604T","T7606C","T7678A","A7687T","C7690A","C7699T","C7701G","C7702T","A7743T","A7747G","T7748C","C7755A","G7773A","A7782G","A7847G","T7852C","G7868A","A7873G","G7885A","T7888C","C7950A","A7955G","G7956A","A7971G","A7986G","A7992G","G8006A","G8050T","C8063A","T8097C","T8103C","C8149G","A8170G","G8204A","G8276T","A8284G","T8321G","T8322C","G8323A","G8329A","T8337A","A8363G","G8385C","C8386G","T8387G","A8405G","T8440C","A8456C","A8457C","-8486A","-8487G","-8488C","-8489A","-8490G","-8491C","C8503A","T8504C","T8505A","G8506T","T8507C","T8509C","A8525G","G8531C","G8537A","C8546T","C8552T","A8555G","A8580G","C8581A","T8582C","G8588A","-8595A","A8617G",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E10D, V32I, S39Q, M50I, V72I, T122I, G283S; RT-p51: T39N, K49R, K122E, V135T, F171Y, A173T, T200I, I202V, E207Q, P294T, S322T, I329L, A360T, A376S, K395R; RT-p66: T39N, K49R, K122E, V135T, F171Y, A173T, T200I, I202V, E207Q, P294T, S322T, I329L, A360T, A376S, K395R, T450S, K451R, K452R, V466A, S468P, Q480K, A534T; gp120: N1K, T3K, T23I, T35K, A37I, K57N, E59G, K69E, L83I, K93E, N102H, D105N, -106V, -107S, N108I, N111P, S115T, -116S, -117R, -118P, -119V, -120E, M121E, K123M, G124-, E125-, M126-, I133S, S136A, M137L, E144Q, L147V, V153I, T154E, P155E, -159S, I166R, V173I, T174K, S181T, K203E, K204T, V227I, E239K, E240Q, E241G, V243K, I244L, E247A, D251N, V255N, I257L, N261D, S263T, E265V, S272N, A288V, W290Y, A291T, R307G, T308K, K309E, N311K, K315S, Q316K, -326E, I332A, N334K, S336P, V344I, S347T, G351A, -368S, -370S, -379I, D384I, I395F, G401R, K412S, Q414P, L424M, N433-, N435K, N446D, K482R; gp41: M24I, T96S, T101S, D125E, D129G, T133S, Q147L, A151E, S157N, N160S, I182V, V189T, P216H, R218E, E223G, E228G, D230G, G235R, L254I, L265S, V267A, V301I, V325F, F340A, L345Q; nef: A15R, V33A, E38D, R39Q, -50A, -51N, A54D, C55I, V56A, E63D, T80D, V85I, K92R, K94E, W102H, I133V, V153I, K155E, N157Q, E158K, G159-, N162S, C163S, Q170L, V182M, R188N, L198M, D205N; p17: K30R, E55G, V82I, K113N, S126N, V128A, Y132F; p2: T9-, -11A, I13V; p24: L6M, I15L, V27I, S41T, L83V, N183G, V191I, P207G; p6: I21T, S23P, P24S, -32E, -35K, N47S; p7: R11K, R41K, D48E; pro: N61S, M89L; rev: E11D, L18I, Q36R, R53Q, T68S, P72H, Q101E, T108A; tat: K19R, F32M, A58P, T64N, P81T, G83S; vif: V31I, F44Y, T63V, L64I, I87V, R93K, R95S, I109Q, N122S, H127Q, S130R, P131H, D134E, I159G, H183R, N190S; vpr: E21S, N28S, H45Y, G94S; vpu: L7I, V10A, A15V, I17L, T24S, E60D, L61A, A62E, M67L, -69D, -71M, -72G, -73P, -74L, -75I, -76I, -77G, -78D, -79I, -80N, 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-80N"}}},{"name":"KJ849759","node_attrs":{"div":0.17903000000000002,"accession":"KJ849759","clade_membership":{"value":"CRF71_BF1"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_PE008"},"LANL_subtype":{"value":"CRF71_BF1"}},"branch_attrs":{"mutations":{"nuc":["T3G","C4A","G10A","C40-","G43T","-45A","-46C","-47A","-49A","-50A","T100C","T155G","A167G","G215A","A303G","G369A","G379A","A386G","A430G","A455G","A491G","T534G","A566C","G607T","A673G","G677A","C731T","T748A","G755A","G771C","A803T","T852A","T858C","C879T","A880C","A881T","C950A","G989A","C1013T","A1089G","C1094T","G1109A","A1115C","C1133T","A1157G","T1166C","A1176G","G1192A","T1253A","G1268A","G1277A","A1289G","T1325C","A1329G","A1339G","G1394A","A1400G","G1421A","-1444T","-1445A","-1446A","C1447A","A1448T","-1457A","-1458A","-1459C","-1460T","G1498A","T1502A","G1503A","T1514C","A1525G","C1535T","A1536C","T1547C","A1562G","A1589G","C1598T","A1642G","T1646G","A1657G","A1670C","A1709G","G1736A","A1774G","C1826T","C1833A","G1841A","A1879G","A1907G","G1918A","A1951G","T1978G","A1984G","T2035C","A2059G","T2080A","G2155A","G2173A","A2215C","A2293G","G2411A","C2420T","G2447A","T2464A","C2527T","A2693G","G2725A","T2735C","T2806C","A2830G","C2839A","C2885T","G2925A","A2984G","G3004A","C3038A","A3080C","T3132G","T3133C","A3192G","A3200G","T3225A","G3264A","A3435G","A3478G","G3544A","T3545C","T3567C","A3586G","A3637G","G3651A","A3670G","A3682G","G3686A","C3688A","G3694A","C3712T","T3754C","G3755A","T3820C","C3823T","A3880G","G3907A","A3988G","T3991C","A4033G","G4177A","A4268G","C4428T","C4462A","G4516A","A4552G","C4569T","C4667T","T4670C","T4712C","T4730C","A4740G","A4745T","A4782G","G4799C","C4841A","C4857A","A4858G","G4865A","C4890A","T4891C","T4916C","T4952A","A4956T","T4969G","T4988A","T5028C","G5030A","A5037G","A5039G","T5047C","A5049C","A5088C","T5147C","T5228C","A5236G","G5255A","A5282T","A5284G","A5285G","G5289A","G5328A","A5336G","A5355C","G5370A","A5397G","T5407C","G5408A","T5424C","T5448A","C5451T","C5457T","G5468C","T5471A","G5482A","T5483G","T5487C","A5491C","A5493G","A5545G","A5556G","G5557A","A5558G","A5560G","T5576C","A5594G","G5599A","A5612C","C5620T","T5641C","G5644A","C5654G","T5686A","A5709G","G5781T","A5787T","T5788G","T5789C","G5790A","C5792A","A5793G","C5795A","C5797T","T5799G","G5801C","G5802A","A5804C","A5806G","T5807C","G5808A","G5809A","G5810T","G5811T","-5812G","-5813G","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","T5829G","G5837A","T5841C","A5846T","A5856G","T5860C","G5866A","G5867A","C5917T","A5957G","A6009G","A6022G","G6029A","A6065G","G6070A","G6088T","C6115T","C6116T","A6173G","A6174G","-6175G","T6178C","A6186G","C6192A","A6200G","G6201A","C6202A","G6205A","-6210T","A6215-","T6216-","G6217-","A6222G","A6251G","A6254C","C6255A","A6259C","A6267G","T6276A","C6293T","T6295G","G6314A","T6315C","A6332G","A6333C","A6336G","T6337C","G6349A","T6385C","T6409C","A6455G","A6456G","T6457A","G6463A","G6466A","T6472A","C6482A","C6483A","A6490C","A6553G","C6595A","T6602A","G6604A","T6610C","T6618A","C6619T","C6632T","T6637A","G6638A","G6647A","A6664G","A6684G","G6697-","-6703A","C6712T","G6714A","T6722G","G6723C","G6724A","G6725A","A6728G","C6729G","C6766T","A6767C","A6779G","A6802G","T6815C","A6822C","-6835T","C6850T","C6862T","A6868G","G6869A","G6871A","A6877G","A6936C","-6956A","-6957A","-6960C","-6963C","-6965G","-6967A","-6968A","-6969G","-6970G","-6971A","-6972G","-6973T","A6978G","-6980A","-6981G","-6982G","A6989-","C6991-","A6992-","C6993-","T6994-","G6995-","T7003-","-7006C","C7008T","C7020G","G7058A","G7061A","G7062A","A7063G","T7075C","A7088C","G7145A","A7149G","A7151G","C7153G","A7154G","A7155G","C7156G","A7160G","G7162A","C7174T","C7201T","A7239G","G7276A","A7309G","A7322C","A7398T","G7423A","T7433C","A7456G","C7463A","A7507G","A7522G","A7533G","A7589G","T7606C","T7626A","A7629G","T7630G","T7642A","G7660A","G7668A","A7669G","C7699T","A7706C","A7729G","A7747T","G7777A","A7791G","A7798C","C7801T","A7840T","A7847G","A7873G","G7885A","A7915G","G7918A","C7939T","A7955G","A7971G","A7974G","A7986G","G7997A","G8001C","C8005T","C8010A","T8013C","C8047T","T8060A","G8070T","C8078A","T8100C","A8105G","A8163G","C8167T","T8218C","T8257C","A8262G","A8275C","C8293T","A8308G","A8338G","A8360C","A8370G","G8402A","G8453A","A8458G","A8484-","C8485-","-8490G","-8491C","C8495T","C8503A","T8567C","T8568C","A8571C","G8588A","-8595T","A8597T","T8600C","A8647G","-8648G","A8654G","C8720T","T8740C","A8746G","T8747G","G8774A","G8795A","A8805G","G8814A","G8817A","G8818A","A8819G","A8827G","T8829A","G8834A","T8864G","C8868G","G8888A","G8894A","A8909G","C8911G","C8921T","C8934T","G8955A","C8967T","G9016A","A9099-","G9100-","A9101-","C9102-","G9105A","C9141G","C9143A","A9144G","C9155A","A9158T"],"INT":["S17N","I165V","T218I","D229E","A265V"],"RT-p51":["E40D","V106I","V118I","D123E","T200A","F214L","D248E","R277K","T297A","H315N","I329L","F346C","K366R","T369A","L377Q","R390K"],"RT-p66":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S17N, I165V, T218I, D229E, A265V; RT-p51: E40D, V106I, V118I, D123E, T200A, F214L, D248E, R277K, T297A, H315N, I329L, F346C, K366R, T369A, L377Q, R390K; RT-p66: E40D, V106I, V118I, D123E, T200A, F214L, D248E, R277K, T297A, H315N, I329L, F346C, K366R, T369A, L377Q, R390K, N447S, L491S, S519N, V531I, A554T; gp120: N1S, T35A, N52S, E59K, N71D, M72I, E78D, -107G, N111S, T112N, -116E, -117G, -118K, -119M, M121-, K123R, I133V, T134H, S136D, K138R, D139N, V141E, P155Q, D157K, N158E, -159D, -160N, -161N, N201G, N206K, P210K, K212N, S250T, V255N, N261K, E262K, E265K, K277R, M281I, R287K, A291T, T292G, E294I, I305L, K309E, K319I, E323A, -328N, G339R, Q361P, -370T, -371T, -372E, -373S, -374T, -375R, -376R, -377S, -378N, T385I, P389R, V402I, G403K, K412Q, G431S, N432S, N433E, N434G, T436E, K462R; gp41: M7L, Q32L, L54M, K77R, T96A, L108Q, D109G, D113E, R122K, I135L, E148D, D163G, I182V, V194I, R218G, E223G, E224G, E228G, D232N, P236Q, L237S, C253S, S256I, R259S, I266T, T268A, N287S, E320G, R324S; nef: I10V, M20I, T48-, A49-, -50A, -51N, A54D, V85F, I133T, Y135W, K155E, E158K, G159K, N162S, C163S, Q170L, D174E, P176A, R188S, A190G, D205N; p1: K4R, I5M, H9S; p17: E12K, R15K, K32R, S67A, K91M, K113R; p2: A7V; p24: L6H, A14P, S41T, Q50S, S120G, E128D, S149G, R154K, T200A, K203R; p6: P25S, -32S, Q52K; p7: R11K, V13I, K20R; pro: T12K, V15I, N37D, D60E, I62M; rev: K14R, T15A, F21L, P31S, Q36R, R50K, R53W, P67S, T68A, V71E, P77Q, D86S, P107S; tat: W11Q, C31S, F32Y, V36S, I39L, R57G, D61S, S62G, V67A, P77L; vif: S52G, I66V, Q91R, L102T, N122K, I124L, I128R, D134E, T151A, I154T, T155P, K168Q; vpr: Y15H, G51R, I60L, I61V, R62K, G75R, I84L, A89T; vpu: Q2P, Q5Y, V13I, A16G, T24S, L27I, E58D, M67A, G68I, -69G, -75V, -77E, -79I, 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pro: K14R, E21D, E65D; rev: S30R, N62D, R66G, T68A, T82S, N86H, N99D, V104L; tat: K12N, K19R, T23N, K29R, F32L, I39M, P59S, S70P, P77A; vif: F39S, H48N, V51T, K63T, I87V, R95S, I109L, I128V, A151S, I154V, R159T, T167K, T180I; vpu: Q2N, Q5V, A15T, 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R20K, V72I, I101L, I201V; RT-p51: K11R, T35I, E40D, R49K, S68G, I135V, A173I, D291E, T296S, D324E, Q428H; RT-p66: K11R, T35I, E40D, R49K, S68G, I135V, A173I, D291E, T296S, D324E, Q428H, A534T, V559I; gp120: D64E, E78D, I80V, K93Q, T104R, D105N, -106A, -107S, N108I, T115S, -116N, G117Q, N119P, E122G, M137I, K142R, N150K, I153L, -160T, T161-, S162-, D202E, K203T, K204A, T208S, T210V, K212N, E240K, V243I, A247K, N252S, K254Q, S263T, E265K, S278G, P285L, D294E, E308G, K309Q, R322G, N334D, Q335K, S336N, P341L, I343V, T344A, G351R, -368H, -382G, -383N, -384G, G401R, R416S, R428S, G430R, N432G, N433G, N435E, A443T; gp41: L4F, G13S, A14T, I24V, L54M, K106T, N109D, Q110N, D113G, E119Q, I135L, T189V, I193V, N195H, R214G, I222T, E223A, E225G, D230G, P236T, L237S, R259H, V267A, T281I, C285W, N287S, I318V, R327G; nef: M20I, V30A, R35Q, H40R, A54D, L58V, V85L, Y102H, K105Q, H116N, L137I, P150T, K152R, Q170L; p17: E55I, Q65H, V82I, T84V, D93E, K113N; p24: A14T, I15L, L83V, V86M, H87Q, M96I, K170R, P207Q; p6: P5T, Q30P, K31R, K32Q, G34E; p7: S4G, I12N, V13I, K20R, R52G; pro: H69Q; rev: E11D, F21L, P31S, E32G, A54D, V109I; tat: A58S, V67A, P77L, S87P; vif: R37G, K63N, R93K, N122S, D134E, K155P, P156Q; vpr: T28A, S41N, H45Y, I60L, Q77R, T84N, R86Q, A89T, A93T; vpu: L4I, I6V, A15V, I18L, V21A, I25V, E48D, -71V"}}}]},{"name":"CRF71_BF1_NODE_0000009","node_attrs":{"div":0.14039,"clade_membership":{"value":"CRF71_BF1"}},"branch_attrs":{"mutations":{"nuc":["G697C","-1452A","-1455A","G1588A","C2420T","A3010G","T4976C","A4993C","A5059G","A5558G","G5725A","C5917T","-6172T","A6174C","A6186C","C6190T","-6210A","A6333-","C6336-","C6396A","G6466A","T6599C","T6602A","G6638C","T6763C","C6935A","-6996A","A7256G","G7517C","T7642G","A7962G","G8006A"],"RT-p51":["L377Q"],"RT-p66":["L377Q"],"gp120":["-118S","D139-","S181N","F249L","S250T","E262Q","Q361K","-368N","-369G","-371T","-374D","-376K","I468V"],"gp41":["V72L","D113E","E220G","G235R"],"p17":["G121A"],"p7":["R41K"],"rev":["T15A","R53Q","V104L"],"tat":["D61G","K85E"],"vif":["Q136P","K158R"],"vpu":["D40N","L82-"]},"labels":{"aa":"RT-p51: L377Q; RT-p66: L377Q; gp120: -118S, D139-, S181N, F249L, S250T, E262Q, Q361K, -368N, -369G, -371T, -374D, -376K, I468V; gp41: V72L, D113E, E220G, G235R; p17: G121A; p7: R41K; rev: T15A, R53Q, V104L; tat: D61G, K85E; vif: Q136P, K158R; vpu: D40N, L82-"}},"children":[{"name":"KJ849761","node_attrs":{"div":0.17895999999999998,"accession":"KJ849761","clade_membership":{"value":"CRF71_BF1"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_PE016"},"LANL_subtype":{"value":"CRF71_BF1"}},"branch_attrs":{"mutations":{"nuc":["-41A","G43A","G121T","A133T","G215A","G224A","T288C","A304T","G317A","C456T","C462A","C467T","G495T","A499C","T506C","C525T","A533C","G607A","T614G","A653G","C688A","C700G","A701C","G702A","G703C","A705G","-706G","C707A","-712G","-713C","G740A","A747C","G762A","A791G","G810A","T852A","A860G","C902T","C926A","C950T","T978G","G989A","C1005G","G1067A","A1145G","T1182C","A1205G","A1208G","A1242T","C1243G","G1256A","G1388A","G1404A","-1444C","-1445C","-1446C","C1447A","A1449G","-1450T","-1451A","C1453A","A1454C","-1457A","-1458A","-1459C","-1460A","T1502G","T1511C","C1541T","C1724T","A1743G","C1775G","A1839G","G1845A","T1888C","C1985G","T1986C","A1993T","G2038A","A2113G","A2230G","A2380C","G2407A","T2464G","C2503T","A2512C","C2584T","C2596A","T2608C","A2616G","A2693G","G2707A","C2715A","A2716C","C2749T","A2764G","A2837G","C2839G","C2845A","A2914G","A2925G","G2947A","A2969G","T3067C","T3080A","A3096T","G3221T","T3225A","G3250A","T3292A","T3342A","C3355T","A3382G","A3409G","C3445T","A3451G","A3478G","C3492T","G3523A","G3544T","T3550C","A3637G","C3649T","G3664A","A3787G","T3793C","G3814A","C3823T","C3825A","G3907A","T3970C","G3989A","A4036G","A4076C","C4110T","A4148G","G4183T","G4186A","G4252A","A4255G","G4267A","A4391T","G4659A","C4674T","C4691A","G4696A","A4697T","C4702T","T4703A","A4767G","A4838T","A4950C","G4995A","C5006G","A5015G","G5024A","C5034T","A5045G","C5086A","G5179A","A5236G","C5237T","A5248G","G5257A","T5314C","A5375G","T5430C","G5433A","T5442C","T5471A","G5482C","T5483A","T5487C","G5538A","C5551T","G5561A","C5567A","C5614T","T5616C","T5617A","A5622G","G5647A","T5677A","T5679C","C5688T","G5700A","G5836A","G5837T","A5840T","-5842G","-5843G","-5844G","A5858G","C5859T","G5861A","T5871C","G5882A","C5958A","A6025T","A6030G","T6046G","A6076G","G6088T","T6109C","A6132G","C6165G","A6177G","A6179G","-6180T","C6183A","C6186T","A6194G","G6195T","G6198C","C6202T","A6204G","A6208C","-6211T","T6216A","A6219G","A6248G","A6261G","G6269-","A6270-","G6274A","-6281C","-6282A","-6283A","T6294C","C6317A","T6325A","A6326G","T6328G","A6329G","-6333C","-6336A","A6370T","G6403T","T6457A","A6466C","C6483A","A6484C","A6489G","C6496T","G6525A","A6535G","C6559T","A6574C","G6588A","G6605A","G6617A","T6618A","G6631A","T6658C","G6714A","A6715G","T6745C","A6765C","T6772G","G6774A","A6780C","A6786G","T6787G","C6790A","A6791G","A6797G","T6810G","-6830A","-6831C","-6832A","-6835T","A6836-","A6837-","T6838-","A6842G","A6855C","T6856A","T6860G","A6887T","A6893C","G6894A","G6910A","A6932T","A6935G","A6936G","A6947G","T6952G","-6956A","-6957A","-6958T","-6959G","-6960A","-6961T","-6962G","-6963G","-6964T","-6965A","-6966C","-6967T","-6968T","-6969G","-6970G","-6971A","-6972A","-6973T","-6974G","-6975A","-6977A","-6978C","-6980A","-6981A","-6982A","-6983T","-6984T","-6985A","A6989G","-6990A","-6997G","T7003-","-7008A","-7009C","C7018T","C7045T","T7047G","G7056A","C7087A","A7088C","T7150C","G7152A","T7153C","T7156C","A7158C","G7162C","G7181A","A7238C","A7269G","A7275G","G7307A","T7313C","A7322G","T7330C","A7402G","A7459G","G7508A","A7522G","A7531G","A7532C","C7590A","A7604G","G7614A","A7620G","C7631T","G7642A","A7656G","G7657A","G7689A","A7706C","C7723T","A7747T","G7790A","A7791G","A7799C","T7844C","G7883A","G7885A","C7903A","C7940A","G7942C","G7965A","A7977G","A8011G","T8016C","G8018A","C8051A","G8107A","T8112C","G8173A","G8204A","T8277C","T8278C","G8402A","G8427A","G8429A","A8455G","A8482G","A8484-","C8485-","-8490G","-8491C","A8493G","A8494G","C8503A","A8519G","G8531T","A8573G","-8595C","A8597G","C8684T","G8732T","A8792C","G8795C","C8825T","A8827T","T8887A","A8909G","G8945A","G8954A","C8967T","C8971T","C9012T","A9023C"],"INT":["T17N","V72I","I101L","T112I","T125A","K136N","T206S"],"RT-p51":["D123E","K174R","T200A","A207D","N248E","D250E","K277R","I292V","L329I","Q334L","A376S","D399E","F416Y"],"RT-p66":["D123E","K174R","T200A","A207D","N248E","D250E","K277R","I292V","L329I","Q334L","A376S","D399E","F416Y","A466V","K483N"],"gp120":["N1S","T2V","A3T","N5D","L6S","V10I","T35K","E59G","D64K","E78D","K93R","T104S","D105-","S109A","T112V","-116K","M121E","E122G","N132D","Q155K","D157E","N158E","-160G","S162K","E183D","N201K","K204N","T210N","K212R","R224K","E240D","R245K","D251N","V255N","R287K","D294E","N304T","S306R","R307K","E308K","K309T","N311R","N312K","T313A","K315E","I319R","-326T","T330A","N334T","S336A","M345L","S347H","T360S","K361G","S365G","-370T","-372W","-373N","-375T","-377L","-378N","-379D","-380T","-381E","-382N","T385-","M398R","G401E","K412Q","N435T","T436N","A443T","K462Q","K472R","K474R"],"gp41":["V2I","M7V","V69I","K77Q","T96N","T101A","S104N","K106R","Q110Y","I135L","E148D","D163S","N166H","V194I","P213T","G221E","E225G","V238A","D239N","I270T","V301I"],"nef":["M20I","G29T","N47S","T48-","N49-","-50A","-51G","A54D","E63D","V85L","E151D","N162I","V182E","V194M"],"p17":["A54S","E55A","D93E","A118D","A122G","G123T","S124G","-126S"],"p2":["N8Q","T9V","-10N","-11T"],"p24":["I6L","V11I","V27I","S41T","L83V","P92A","T171C","G225S"],"p6":["T22A"],"p7":["S4G","I12M"],"pro":["K14R","G16E","L63A","E65D"],"rev":["S8N","V16I","L18I","P31H","E32Q","I55V","G57E","T68K","E87K","V109I"],"tat":["F32Y","V36H","P59S","S62N","T64N","R78P","E86K"],"vif":["V25I","H30Y","R37N","F39L","K61E","N122H","A137T","N140K","T167K"],"vpr":["H45Y"],"vpu":["P3S","L4I","V14I","S24T","-71I"]},"labels":{"aa":"INT: T17N, V72I, I101L, T112I, T125A, K136N, T206S; RT-p51: D123E, K174R, T200A, A207D, N248E, D250E, K277R, I292V, L329I, Q334L, A376S, D399E, F416Y; RT-p66: D123E, K174R, T200A, A207D, N248E, D250E, K277R, I292V, L329I, Q334L, A376S, D399E, F416Y, A466V, K483N; gp120: N1S, T2V, A3T, N5D, L6S, V10I, T35K, E59G, D64K, E78D, K93R, T104S, D105-, S109A, T112V, -116K, M121E, E122G, N132D, Q155K, D157E, N158E, -160G, S162K, E183D, N201K, K204N, T210N, K212R, R224K, E240D, R245K, D251N, V255N, R287K, D294E, N304T, S306R, R307K, E308K, K309T, N311R, N312K, T313A, K315E, I319R, -326T, T330A, N334T, S336A, M345L, S347H, T360S, K361G, S365G, -370T, -372W, -373N, -375T, -377L, -378N, -379D, -380T, -381E, -382N, T385-, M398R, G401E, K412Q, N435T, T436N, A443T, K462Q, K472R, K474R; gp41: V2I, M7V, V69I, K77Q, T96N, T101A, S104N, K106R, Q110Y, I135L, E148D, D163S, N166H, V194I, P213T, G221E, E225G, V238A, D239N, I270T, V301I; nef: M20I, G29T, N47S, T48-, N49-, -50A, -51G, A54D, E63D, V85L, E151D, N162I, V182E, V194M; p17: A54S, E55A, D93E, A118D, A122G, G123T, S124G, -126S; p2: N8Q, T9V, -10N, -11T; p24: I6L, V11I, V27I, S41T, L83V, P92A, T171C, G225S; p6: T22A; p7: S4G, I12M; pro: K14R, G16E, L63A, E65D; rev: S8N, V16I, L18I, P31H, E32Q, I55V, G57E, T68K, E87K, V109I; tat: F32Y, V36H, P59S, S62N, T64N, R78P, E86K; vif: V25I, H30Y, R37N, F39L, K61E, N122H, A137T, N140K, T167K; vpr: H45Y; vpu: P3S, L4I, V14I, S24T, 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P59S, S62G, V67A, P68T, L69I, S87Q; vif: R37K, R41S, V51I, K61T, G101S, R132S, T167K; vpr: L85P; vpu: Q5Y, V13I, A16G, K32R, G68E, P69-, L70-, I72-, G73-, N74-, 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L28I, L45Q, V165I; RT-p51: V35I, S251N, T357S, K395R, E404D; RT-p66: V35I, S251N, T357S, K395R, E404D; gp120: E74D, N109T, M398L, N435T, T437S; gp41: Q32L, L81I, L82M, D129N, V130E, Q137L, V318I, R324S, I329V; nef: A15T, A26V, E38G, A83G, V85F, H89F, R188H, H192Q; p17: S126N; p24: I6A, V11I, A14P, A47C, E128D, E180D, A194S; p7: K7R, K20R; pro: I13V; rev: P31S, S106P, A108T; tat: P77L; vif: N19S, T20K, R50K; vpu: 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N27S, V72I; RT-p51: K32N, I135R; RT-p66: K32N, I135R; gp120: K5T, D34N, L57V, -104S, -105D, -106V, -107A, N108S, T109I, T110N, T112N, -118K, -119G, -121I, N150K, V154M, E157G, S158L, D159G, S167N, I180T, N201K, N267T, K277R, S278G, K287R, F289L, D294E, R315G, R322K, -326P, N369-, T371-, -383S, K391R, N432D, N433D, E436-, K462R, R480K; gp41: V24M, V28G, D109N, S133G, A136T, N140S, K144R, A156T, N160S, K172R, A189T, Q199K, A212V, R233T, G240S, T243A, C253F, H259Q, I270T, N298K, I319L, L330I, A343T; nef: T15N, K39R, A50T, L55M, S88G, V148I, F191Y, Y203F; p1: H9N; p17: Q59K, N124S; p2: A7V, N9T; p24: I11M, V230I; p6: -26Q, Q28V, Q30G, K31Q, E32G, -33Q; p7: I12S, K34R; pro: K14I, D35E, I64V; rev: I21T, Q51H, S54T, R58Q, I59L, T68S, L78I, V104L, *117E; tat: S68P, S70P, L77F; vif: G101D, A155G, Q167K, K179G; vpr: E6G, L68M; vpu: L7F, I17V, V21I, V39I, K41N, I43L, D44A, R47I, 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V27I, P207Q; p6: P23-, S24P, -26L, A39T, *50L; p7: R11K, K41R; pro: K14R, N61D; rev: D11E, F21A, S30N, P67S, Q74L, D86E, C89S, S112P; tat: K12Q, V36K, I39T, P58A, Q63K, V67S, L69I, S70P, T74S; vif: M29K, K33R, G37E, V39E, K63R, R92K, Q105R, A137T; vpr: S28R, I37V, H40Q, Y45F, A55T; vpu: V15A, I18L, L27F, L34V, R37K, -66A, M67V, -69V, -70E"}}},{"name":"JF804812","node_attrs":{"div":0.19301000000000001,"accession":"JF804812","clade_membership":{"value":"CRF28_BF1"},"country":{"value":"BR"},"date":{"value":2005.0},"Strain_name":{"value":"0679SV"},"LANL_subtype":{"value":"CRF28_BF1"}},"branch_attrs":{"mutations":{"nuc":["T201A","G215A","C227A","G265A","A302T","A303-","G329T","A368T","A374G","A399C","A424G","A435G","A437T","C456T","C462A","C467T","G508A","T534A","C535G","A562G","A563G","C590T","G607A","A619G","T635C","T641G","G644A","G677A","A697G","G717A","T718C","C747A","G818A","G869A","T978G","G989A","A998G","T1028G","T1040C","T1046G","C1178T","A1193G","A1359T","C1362T","A1404G","T1427C","A1442T","C1444T","A1449G","A1450C","G1452A","G1455A","C1456A","G1472A","T1501A","A1526G","C1613T","A1642G","C1658G","G1673A","C1680A","A1701T","A1733G","A1735G","-1746C","-1747C","-1748T","C1749T","T1752C","T1754-","C1755-","C1756-","T1783G","T1785G","C1787T","T1790C","C1825A","C1826A","G1829A","C1831A","A1835G","A1839G","G1845A","A1849T","A1857G","A1897T","A1907G","A1932G","T1955C","A1958G","C1985A","T1986C","C2005T","C2010T","T2013C","A2014C","G2023A","T2024G","A2038G","T2043C","T2066A","A2075C","A2154G","G2156A","T2199A","A2210G","A2216C","G2224A","T2245C","A2317G","A2332G","G2358T","G2359T","C2420T","A2461G","T2499C","A2519G","G2548A","C2589T","A2645G","A2665G","A2692G","A2693G","G2702A","A2707G","T2724G","G2727A","A2738T","C2739A","A2743C","T2778A","C2845T","G2872A","G2878A","C2909T","G2914A","A2920G","A2951G","G2957T","G2972A","A3010G","C3075T","G3088A","G3094A","C3100A","A3103G","A3116G","C3174T","T3181A","A3264G","A3292C","T3303C","G3340A","C3449A","A3451G","A3521C","T3544G","A3562G","T3567C","C3613T","T3628C","C3649A","G3664A","G3667A","A3682C","G3685A","A3733G","A3787C","T3793G","G3805T","G3825A","C3843T","G3891A","T3967C","G3989A","T4039C","A4076C","A4130C","C4140T","C4146A","A4148G","G4150A","G4183A","T4234C","G4243A","G4252A","A4255G","G4303C","A4306G","G4351A","T4412C","A4474T","A4498G","C4501T","A4546T","G4582A","T4656C","C4667T","A4671G","G4673A","A4693C","A4717T","C4728A","A4737G","G4779A","T4786A","G4829A","C4833A","A4834G","G4835T","A4857G","A4877G","A4878G","C4883T","A4892G","A4901T","A4968G","G4986A","G5009A","C5050A","A5051G","T5084C","G5087A","G5131A","A5154C","G5167A","A5200G","C5221T","T5228C","T5237C","C5268T","A5282T","T5292C","A5336C","G5359C","G5370A","A5375G","C5444A","C5495A","A5545G","C5567A","A5612T","T5614C","C5620G","A5621T","A5628T","G5668A","C5679T","G5685A","T5686G","G5700A","G5737A","A5743T","G5747T","A5796G","-5805C","A5840T","G5861A","G5864C","A5866G","C5884A","G5893A","C5958A","G5972A","A6008G","G6016A","A6030G","G6037A","A6053G","A6065G","G6086A","T6109G","G6121A","T6170G","T6175C","A6180G","T6181C","T6187A","A6194G","G6198C","G6201A","-6203A","-6204G","-6205G","-6207T","-6211A","-6212A","-6213T","-6214A","-6216T","-6217T","G6218T","-6219G","T6264A","G6266A","G6269A","C6278A","G6314A","T6315A","C6318A","T6321C","T6325A","C6345T","T6351C","A6354G","T6372G","G6379T","C6387A","A6420T","G6458A","A6465C","C6477A","C6496T","T6511C","G6525A","G6577C","C6601T","G6604A","A6622T","A6628G","C6666T","C6667A","A6668G","C6670T","A6679C","A6682G","A6695C","C6707T","C6708G","G6716A","T6721G","T6745C","A6746C","T6747C","A6781T","C6790A","A6798G","A6801G","C6810T","G6819A","A6820T","G6821A","T6828A","T6829C","T6835C","T6838C","A6840G","G6848T","C6849T","A6858G","A6932T","C6938T","A6959T","A6963C","C6964T","C6966A","T6967G","T6968A","G6969T","G6970C","-6971T","-6973C","-6974A","-6977G","-6978A","A6987C","T6991G","-6995G","-6996A","-6997G","-7002A","-7005G","-7006T","A7037T","A7095T","T7114C","G7126A","C7127T","T7130A","C7153T","A7154G","A7158G","T7159C","G7160C","G7162T","A7163C","A7183G","A7373T","G7390A","A7428G","A7504G","T7516C","G7517A","A7620G","A7633T","T7642C","A7666G","A7669G","C7702T","A7711G","A7747C","T7762A","A7763T","A7764C","G7765A","T7775C","G7790A","C7874T","G7885A","T7894C","C7939T","A7941C","C7954A","A7995G","A8011C","C8051A","C8065T","C8146A","C8149G","G8170A","G8181T","C8213T","G8219T","C8220G","C8221T","C8223T","A8228G","G8264A","T8268C","A8276G","T8277C","G8280T","T8290C","A8297G","A8303G","G8304T","A8306C","T8348A","C8364T","A8367G","A8370C","G8436C","T8440C","G8453A","A8458G","A8468G","T8483C","G8528A","G8540T","C8546T","G8554A","A8555G","A8564G","A8588G","T8595G","C8646T","A8653C","G8654A","C8727A","G8802A","A8823G","T8835C","A8844C","G8846A","A8847G","G8848C","A8912G","T8915C","A8971C","A9009G"],"INT":["D6E","E10D","S17N","A23V","S39N","V72I","I101L","S119P","T122I","T124N","T125A","E256D"],"RT-p51":["K20R","V21I","V35E","T39A","M41L","W88F","I135T","I142V","T165I","M184V","T200A","E203K","L210W","R211K","T215Y","L228H","P272S","T286A","A288S","V293I","A327V","I341V","A360V","K390R","E399D","I403T"],"RT-p66":["K20R","V21I","V35E","T39A","M41L","W88F","I135T","I142V","T165I","M184V","T200A","E203K","L210W","R211K","T215Y","L228H","P272S","T286A","A288S","V293I","A327V","I341V","A360V","K390R","E399D","I40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D6E, E10D, S17N, A23V, S39N, V72I, I101L, S119P, T122I, T124N, T125A, E256D; RT-p51: K20R, V21I, V35E, T39A, M41L, W88F, I135T, I142V, T165I, M184V, T200A, E203K, L210W, R211K, T215Y, L228H, P272S, T286A, A288S, V293I, A327V, I341V, A360V, K390R, E399D, I403T; RT-p66: K20R, V21I, V35E, T39A, M41L, W88F, I135T, I142V, T165I, M184V, T200A, E203K, L210W, R211K, T215Y, L228H, P272S, T286A, A288S, V293I, A327V, I341V, A360V, K390R, E399D, I403T, L452K, K476Q, H483Q, L491S, E529D; gp120: A3T, E4Q, T35K, V40I, N52D, E59G, M67V, N71D, E78K, D85E, N105D, L106V, R109G, T112S, I137K, G138R, D139N, Q142N, V154K, P155Q, I156T, N157E, T164I, I166T, N167S, I173S, Q175H, P178Q, Y189F, D202N, K204T, T208K, R224K, E241D, P271L, N272D, I281L, P285W, A288T, I298P, T308A, K309N, N312K, K315R, Q316R, G322N, E323K, F325Y, K329R, A332F, Q335R, T360S, -370D, -372K, -373T, -374E, -375N, -376G, D384-, I395F, S412R, Q414L, L426I, N433-, N434-, T437S; gp41: V24L, N42S, V72I, K106R, S107T, D109K, E110D, E148D, D153E, K154S, D163N, L191F, Q213P, D217E, K231R, S293I, L304F, A306C, T307I, I309V, V321I, V322A, I325A, C326F, I332V, R334V; nef: R8C, S9G, M10L, D28E, G29R, A32P, K39R, R71K, L85V, H102Y, Q104P, E151D, E154K, N161D, M168L, S169A; p1: K4R, H9Q; p17: K30R, I34V, R58K, K76R, K95R, D102E, D121G, V128T; p2: A7V, N9-, S10-, V13N; p24: L83V, T210S, S225G; p6: L1I, T8S, E19G, T21I, -26Q, Q28D, Q30G, K31R, D32E, E33G, G34L, L35Y, Y36P, P49Q, S51*; p7: S4G, I12N; pro: L10I, V11I, I13V, K14R, G16E, K20R, L33F, N37D, K45R, F53L, I54V, L63T, A71V, I72T, L76V, V82A, L90M, I93L; rev: L18I, P31S, Q36K, I55L, A68E, L73F, P100T, Q101E, A108T, E111D; tat: T40K, R57G, T64N, P77L, T82K; vif: M29V, K36T, Y44F, I51V, V65I, I67K, Q83S, K91E, I98V, Q105H, I128V, D134N, T155K, G182D, N190H; vpr: E17A, Y45H, A55V, I60L, I63T, R85P, A89T; vpu: Q2L, S3P, Q5V, L7F, V21I, L27V, D44N, I46L, R47I, D60E, Q61L, E62S, E63A, L65V, -66D, -68G, M71-, G72-, 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F72Y, R77Q; vpu: Q2H, K38R, D44E, M67-, -69V, 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K154R; p6: D32E; p7: K3R, S4G, R11K, K26R, K41R; pro: I15V, K20R, N61D; rev: L13I, V16I, L18I, I55L, T68E, L73F, L78I, D86N, G88D, I102V, E111G; tat: K12Q, T23N, F32L, I39M, T40K, P59H, S62N, T64N, H65N, P77S, D80N; vif: G37K, I51V, R92E, I98V, A137T, V154T, T155K, I159T, S186N; vpr: I60L, L68M, T84N; vpu: S3A, Q5I, L7A, L27F, I42L, D60E, Q61L, E63A, L65G, -66D, -68G, M71-, G72-, H73-, D74-, A75-, P76-, W77-, D78-, V79-, N80-, 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L87I, F143Y, E151D, A156E, E158K, C163S, Y202F, Y203F; p17: K26N, G62S, K91R, V94I, K113T, S126R; p2: A11-; p24: I6L, V27I; p6: T8S, F15L, I21R, L35K, K42R; p7: K26R, D48E; pro: I15V, N61D; rev: D11E, L13I, A68T, L78I, D86S, V109I; tat: K19R, T23N, P58T, P59H, H65D, P77F; vif: I51V, A62D, K63E, R93K, Y110N, N122K, V129I, T151A, K158R, T159I, Q178R; vpr: P37I, Y45H, Q77R, I84N, R85P; vpu: L7I, L27F, K38R, D44N, Q61H, E63A, L65V, 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T125A, A205S; RT-p51: K390R; RT-p66: K390R; gp120: G124-, K127-, T134-, D159N, P285-, D294-, N312K, A332I, Q335N, V344E, R416S, T437N; gp41: A6V, D163S, S256L; nef: R19K; p2: N9G, T12V, V13-; p24: R154K; rev: Q74P; vif: K91Q, E117D, N122K, E134N, T155A, R167Q, T170V, K181R; vpr: S28N, E48N, A55E, Q77H"}},"children":[{"name":"JF804807","node_attrs":{"div":0.19555999999999998,"accession":"JF804807","clade_membership":{"value":"CRF29_BF1"},"country":{"value":"BR"},"date":{"value":2005.0},"Strain_name":{"value":"0264RI"},"LANL_subtype":{"value":"CRF29_BF1"}},"branch_attrs":{"mutations":{"nuc":["-305A","A374G","A380G","A423C","C503T","G508A","T539A","G599A","A605G","G615A","C641A","T668C","A675C","G678A","A706G","T718C","C747A","G806A","G818A","T861G","C875T","C892T","T897C","T978A","T979C","A1007G","T1046A","A1050G","C1051T","A1115C","G1126A","A1208G","C1244A","A1259G","T1262C","T1325C","T1409C","A1449G","A1452G","A1485-","A1486-","G1487-","G1488A","G1489A","C1490A","A1492C","A1500G","A1586G","A1592G","A1595G","C1680A","G1697A","A1715G","A1759G","C1761A","T1785A","C1787T","T1790C","C1833T","G1845A","C1853T","A1920G","T1975C","C1981T","A1982G","C1987T","T2013C","A2014G","A2038G","T2041G","G2068A","A2128G","C2281A","G2294A","C2301A","A2304G","C2326T","A2404C","G2417A","A2459G","A2464C","T2597C","C2626A","A2645G","G2702A","C2720T","C2749T","A2750G","A2751G","T2788C","A2808C","G2887A","C2909T","A2932G","A2937G","G2947A","C2978T","C3013T","A3028G","C3038T","G3088A","G3127A","T3165C","C3223T","A3238T","C3266T","A3274G","A3276T","A3316G","G3340A","A3454G","A3583G","T3602A","A3611C","C3649T","A3766G","G3796A","G3802A","A3835G","G3935A","A3973C","A4066C","A4107G","T4224C","A4249G","G4252A","C4258A","G4262A","G4263A","A4338G","A4403G","C4404T","A4695G","T4701G","C4728A","C4757T","G4770A","C4771A","A4956T","A4970G","G4971A","C4977A","A5036G","A5049G","A5057G","G5075T","T5083C","G5131A","T5147C","A5155G","G5199A","T5203C","T5263C","A5269G","C5281A","C5306T","G5344A","G5365C","G5396A","A5397C","A5418G","C5445A","A5460G","C5495A","C5549G","C5559T","A5574G","T5584C","A5594G","G5599T","C5602T","T5616C","G5717A","A5742G","G5747C","C5778T","A5781G","T5788C","T5789A","T5791-","G5794-","C5795-","A5796-","C5797-","T5798-","T5801A","-5804A","-5805A","-5806T","-5807T","-5808A","-5809T","-5810T","-5811G","-5812G","-5813C","-5814A","-5815G","-5816T","-5817T","-5818A","-5819T","-5820G","A5846C","T5852A","G5858A","A5926G","A5935C","A5947G","G6002A","C6010T","A6092G","A6130C","C6163T","G6172A","A6180G","A6188G","-6204G","-6205T","-6208T","-6209C","-6210T","-6211T","-6212G","-6213A","-6214A","A6215T","-6216A","-6217T","G6218A","-6219T","-6221A","C6241T","G6269A","G6314A","A6316G","A6329-","A6330-","T6331-","A6332-","A6333-","T6334-","A6346G","T6393C","A6456G","C6483T","A6484G","A6489G","A6532G","T6541C","A6544G","G6605A","T6637C","C6667T","A6668G","A6674-","A6675-","T6676-","A6682G","T6688G","A6695C","C6707A","C6708G","C6717T","T6738A","A6751G","C6752T","A6754C","T6763C","C6767G","G6774C","C6777A","G6785A","A6787G","C6790A","A6797G","G6818A","A6833-","A6834-","T6835-","C6849T","C6857T","A6858C","T6888C","G6889A","T6958-","A6959-","A6960-","A6962-","T6967A","-6968G","-6972A","-6974G","-6976C","-6980G","-6984C","A6990C","C6991T","A6996G","-6997T","T7003-","G7004-","A7033G","A7040G","G7089C","T7141C","T7150C","A7151T","C7153T","G7155C","C7159G","G7162C","C7165T","C7174T","G7182C","A7240G","C7320T","A7322C","A7373G","A7376G","T7411C","G7459A","G7484A","A7487G","G7501A","A7531G","A7532G","A7533C","A7540G","A7549G","T7555G","T7561A","A7589G","T7618C","G7628A","G7688A","A7696T","A7832G","A7880G","C7906T","G7918A","C7921T","C7931T","G7987C","C8005A","A8006G","T8008G","A8017G","G8050A","C8063A","A8069C","G8079A","A8104G","A8152G","T8155C","A8163G","T8176C","C8189A","G8255A","A8276G","T8277C","T8279G","G8280T","C8286T","A8367-","A8370G","T8371G","G8372C","G8373A","G8374A","A8409G","A8425T","A8426T","T8451C","C8480T","T8483C","G8490T","C8504A","C8593G","C8609T","C8646T","A8716G","C8720T","G8784A","G8805A","C8828T","G8834A","T8835C","G8875A","T8883C","C8904A","T8923G","C8934A","T8935A","A8947T","A8950T","A8954G","G8955A","T8966G","A8980C","C9017T","G9117A"],"INT":["V54I","K111R","V150A","G163K","K188R","T210V"],"RT-p51":["D67N","T69N","K70R","K103N","V108I","K122E","E123D","D177E","M184V","E203K","K219G","K238T","P272S","K281R","H315Y","M357T","I393M","Q394L"],"RT-p66":["D67N","T69N","K70R","K103N","V108I","K122E","E123D","D177E","M184V","E203K","K219G","K238T","P272S","K281R","H315Y","M357T","I393M","Q394L","L503I","I506L"],"gp120":["A2T","D50N","I80V","N109I","T112N","S116L","-117E","-118Y","E122-","-123K","-124E","-127T","D139N","V154M","N159-","N160-","V180T","N201S","P210L","K212R","D251N","N272D","N274-","S278R","I281L","-282G","-283R","G286-","A288V","-294G","Q300Y","L305V","G307A","T308E","K315E","G322R","N327-","N335S","M345T","-368T","N369-","T371-","-382G","-383N","I396V","S412T","N433Y","N434T","N435K","E436D","G443A"],"gp41":["I4T","M7L","T25A","G61S","I62V","K77A","I84M","T96A","D109N","G129N","K172R","I177V","I193V","L210F","E228D","I235V","L254I","R259H","N287S","L296I","V318I","I325A","G326V","A328V"],"nef":["S9-"],"p17":["K30Q","R58K","L61I","V94I","K114Q","A115T","N124S","V128A"],"p2":["T10A"],"p24":["S44A","T54I","L83T","T1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V54I, K111R, V150A, G163K, K188R, T210V; RT-p51: D67N, T69N, K70R, K103N, V108I, K122E, E123D, D177E, M184V, E203K, K219G, K238T, P272S, K281R, H315Y, M357T, I393M, Q394L; RT-p66: D67N, T69N, K70R, K103N, V108I, K122E, E123D, D177E, M184V, E203K, K219G, K238T, P272S, K281R, H315Y, M357T, I393M, Q394L, L503I, I506L; gp120: A2T, D50N, I80V, N109I, T112N, S116L, -117E, -118Y, E122-, -123K, -124E, -127T, D139N, V154M, N159-, N160-, V180T, N201S, P210L, K212R, D251N, N272D, N274-, S278R, I281L, -282G, -283R, G286-, A288V, -294G, Q300Y, L305V, G307A, T308E, K315E, G322R, N327-, N335S, M345T, -368T, N369-, T371-, -382G, -383N, I396V, S412T, N433Y, N434T, N435K, E436D, G443A; gp41: I4T, M7L, T25A, G61S, I62V, K77A, I84M, T96A, D109N, G129N, K172R, I177V, I193V, L210F, E228D, I235V, L254I, R259H, N287S, L296I, V318I, I325A, G326V, A328V; nef: S9-; p17: K30Q, R58K, L61I, V94I, K114Q, A115T, N124S, V128A; p2: T10A; p24: S44A, T54I, L83T, T107V, E128D, R132K; p6: L1I, -26R, E29K, Q30D, K31E, D32G, E33Q, G34N, Q52*; p7: G8P, Q9R, R11V, I12-; pro: T12I, G16E, K41R, I62V, I72T; rev: D11E, L12V, T15I, K20R, P28L, S31P, E47Q, H53S, S54A, R57G, A68T, P72H, I102V, T114N; tat: R7N, T40K, P58S, S70P; vif: R37G, F39V, H48N, A62N, I124L, V129I, P131T, L163F, V166A, G182D, N190S; vpr: Y15H, R32K, R80K, R87T; vpu: R37K, R47T, -66A, -67V, N80T, 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I201V; RT-p51: I60V, I292V, V317M, Q334L; RT-p66: I60V, I292V, V317M, Q334L, S519N, K527Q; gp120: E19D, V37K, I56V, Q86E, K143R, V242I, M281-, V332I, G351R; gp41: N42S, D113E, V194I, D230N; nef: A49K, A50D, I133T, Q170L, D174E, D177E, R178G; p17: S126N; p24: E128D, V148A, G225S; p6: T23S; p7: R10N, T12I, K41R; pro: L33V, Q69K; rev: R48K; tat: S62G; vif: P47H, I128R, K176D; vpr: Q3R, A4P, Y15H, I70V, R85P; vpu: E36Q, L42I"}},"children":[{"name":"KY628221","node_attrs":{"div":0.21291000000000002,"accession":"KY628221","clade_membership":{"value":"CRF90_BF1"},"country":{"value":"BR"},"date":{"value":2011.0},"Strain_name":{"value":"BRGO6043"},"LANL_subtype":{"value":"CRF90_BF1"}},"branch_attrs":{"mutations":{"nuc":["C201T","A215G","G265A","A388G","G394A","G455A","C516T","T602C","G608T","G612A","A632G","A643G","A730T","C773T","A809G","T852A","G866A","A945G","A959G","T978C","G980A","G1067A","A1093C","C1103T","C1175T","G1192A","C1265T","C1316T","T1334C","G1346A","C1362T","A1418G","T1457C","C1478G","G1486A","G1487C","G1503A","A1525G","G1532A","G1553A","C1656A","A1670G","C1693T","A1756T","C1767G","C1768A","A1793T","G1794A","C1825G","T1986A","C1996T","T2236C","C2296T","T2365C","T2464G","G2470A","A2498G","C2503T","G2539A","A2545C","A2592G","C2596T","C2626G","T2632C","A2743G","T2854G","A2884G","A2972G","T3040A","C3067T","A3080G","A3103G","G3154A","A3292G","C3358T","G3364A","G3398A","A3403G","C3496T","T3721A","T3754C","T3946C","A4012G","A4270T","A4407G","C4543T","C4569T","G4683A","T4702A","A4774G","G4835A","G4878A","G4887A","A4888G","T4952A","A5046G","C5052A","A5056G","A5057G","A5086G","A5090G","G5140A","C5162T","A5213G","T5239C","G5275A","T5293C","A5336T","A5369G","T5424C","G5427A","C5495G","G5501C","T5515A","A5545G","C5563T","A5564C","T5584C","T5616C","C5620A","A5621C","T5626A","G5729A","C5778T","C5795G","A5796G","-5805A","G5866A","A5915G","C5916T","A6019G","A6176C","A6185C","G6198C","C6201-","T6202-","G6206A","-6207G","A6208G","-6214A","-6219T","G6223T","A6229C","A6254G","A6353G","C6361T","T6395A","C6396G","T6403A","C6412A","C6427T","C6446A","A6458G","A6461G","C6469T","A6489C","C6499T","G6572A","A6574G","G6604A","G6611A","A6618G","G6647A","A6648T","A6649C","A6682G","-6700G","-6702T","A6734G","T6735A","G6773A","G6776A","A6779G","A6781C","C6787T","A6818T","A6820T","T6828-","T6829-","A6833-","A6841G","C6919T","C6935A","A6936G","A6956T","A6957T","A6962G","G6963A","A6965G","T6976-","T6979C","-6980G","-6981A","-6982G","A6990G","A6996-","-7002C","C7008A","A7009T","G7048A","A7102G","T7105C","A7151G","C7153T","A7157C","C7159A","G7160A","A7161C","G7168A","G7291A","A7312G","G7426A","A7471G","G7492A","G7552A","C7645A","A7688G","C7701A","G7712C","G7717A","A7750G","G7807A","T7913G","T7921G","C7931T","C7938T","G7947A","T7968C","G7997A","T8032G","C8065T","G8079A","A8092T","T8145C","G8219A","G8254A","T8265C","A8288G","G8303A","T8304G","T8366C","-8369T","-8370A","-8371G","-8372A","-8373T","-8374C","C8382G","C8412G","T8414A","A8415G","A8426G","A8474T","T8501C","G8534T","A8584T","T8595C","C8606T","T8648C","T8711C","C8720T","C8741T","A8746T","C8775T","A8777G","T8825C","G8846A","T8867C","A8893G","C8903T","G8905T","C8921T","G8936A","C8957T","G8991A","A9009G","G9013A","G9137A"],"INT":["K211R","A265V"],"RT-p51":["D123E","I135V","K166R","D177E","I293V","H315Q","I329V","V435I"],"RT-p66":["D123E","I135V","K166R","D177E","I293V","H315Q","I329V","V435I"],"gp120":["T21V","-106W","-107K","N109S","S115N","K123-","E125D","T134A","S167G","L198I","N202D","K203E","K212T","E240K","A253T","N255S","E265I","H280-","-282Q","-283M","E307K","K309D","K322Y","F325Y","N327-","K329R"],"gp41":["N114K","N129G","T133N","E137Q","L204V","F206L","L210F","A212V","G215E","I222T","D232N","R259H","L263F","I281T","A306T","V321A","I329V","V334R"],"nef":["-10R","-11S","P14A","Q22R","T23Q","P24N","E28A","G29A","Y81F","Y135F","M168I","K184R","R188L","M194V"],"p1":["H9N"],"p17":["K18R","R20Q","K91N","E93K","K103R","Y132F"],"p24":["S41T","T72A","N121T","R154K"],"p6":["P5L","Q26L","P30E","L38F","A39T","P49R"],"p7":["R7N","Q9P","V13I","K20R"],"pro":["L63H"],"rev":["K17Q","P28L","R50K","S62A","L73F","T82S"],"tat":["T40R","G42A","Y47N","S57G","Q63S","H65R","S70P","P77S","D80N","S87P"],"vif":["G33R","F39Y","K63R","V98I","D101S","N122K","I154V","P156T","K157R","K167R","G185E"],"vpr":["Q77H"],"vpu":["Q5T","L7I","A16T","R41K","A63G"]},"labels":{"aa":"INT: K211R, A265V; RT-p51: D123E, I135V, K166R, D177E, I293V, H315Q, I329V, V435I; RT-p66: D123E, I135V, K166R, D177E, I293V, H315Q, I329V, V435I; gp120: T21V, -106W, -107K, N109S, S115N, K123-, E125D, T134A, S167G, L198I, N202D, K203E, K212T, E240K, A253T, N255S, E265I, H280-, -282Q, -283M, E307K, K309D, K322Y, F325Y, N327-, K329R; gp41: N114K, N129G, T133N, E137Q, L204V, F206L, L210F, A212V, G215E, I222T, D232N, R259H, L263F, I281T, A306T, V321A, I329V, V334R; nef: -10R, -11S, P14A, Q22R, T23Q, P24N, E28A, G29A, Y81F, Y135F, M168I, K184R, R188L, M194V; p1: H9N; p17: K18R, R20Q, K91N, E93K, K103R, Y132F; p24: S41T, T72A, N121T, R154K; p6: P5L, Q26L, P30E, L38F, A39T, P49R; p7: R7N, Q9P, V13I, K20R; pro: L63H; rev: K17Q, P28L, R50K, S62A, L73F, T82S; tat: T40R, G42A, Y47N, S57G, Q63S, H65R, S70P, P77S, D80N, S87P; vif: G33R, F39Y, K63R, V98I, D101S, N122K, I154V, P156T, K157R, K167R, G185E; vpr: Q77H; vpu: Q5T, L7I, A16T, R41K, A63G"}}},{"name":"KY628218","node_attrs":{"div":0.21198000000000003,"accession":"KY628218","clade_membership":{"value":"CRF90_BF1"},"country":{"value":"BR"},"date":{"value":2007.0},"Strain_name":{"value":"BRGO3145"},"LANL_subtype":{"value":"CRF90_BF1"}},"branch_attrs":{"mutations":{"nuc":["A263G","T307A","A380G","G406T","A410T","A424G","A435G","G519A","T539C","A545G","A585G","C586T","G644A","G656A","A680G","T728C","T749C","G818A","G944T","A1025G","C1040T","C1089A","G1139A","C1229T","A1237T","G1301A","G1313A","T1331C","C1354G","A1479G","T1482G","C1490T","A1492G","A1496C","T1511C","A1543G","C1550T","G1552A","C1721T","A1743G","A1777G","C1787T","C1828T","A2059G","A2215T","A2227G","C2440T","A2459G","A2515G","T2521A","A2627C","C2701A","A2715C","C2720T","A2727G","C2863T","G2887A","T2935C","C2975A","C2978T","T3045C","G3046A","A3192G","G3221A","A3230T","A3265G","G3427A","T3589C","G3631A","A3644G","C3712T","A3733G","A3748G","A3808C","G3866A","C3908A","G3925A","G3950A","G3985A","A3988G","C3995A","G3997A","C4110T","G4183A","A4255C","A4408G","T4441A","A4642G","T4643G","C4645T","A4678T","G4679A","A4696C","C4715T","A4785G","C4786T","A4838G","G4856A","G4870C","C4898T","C4911T","T4916C","T4988G","T5073C","A5225G","A5248C","G5257A","A5284G","T5292C","T5303A","A5336G","A5345G","G5363A","A5400G","A5411G","G5437C","A5447G","T5475C","G5570A","A5601G","A5619G","A5628C","A5640T","A5643G","G5647A","C5651G","C5654T","T5670A","T5686G","G5794A","-5805G","C5834T","G5857A","G5861A","G5939A","A5956C","A6008G","A6059G","T6101C","T6134C","T6151C","G6167A","G6175C","A6177T","G6179A","A6191G","G6195A","T6196C","G6198A","T6199G","-6203G","-6204A","-6205G","-6207A","A6209G","A6229G","A6251G","A6275G","G6277A","T6287C","A6327C","T6328A","A6350G","C6375A","T6424C","G6425A","G6466A","T6511C","G6526A","G6547A","C6548T","A6553G","G6577T","A6584C","C6595T","G6605A","C6673T","-6700T","-6702C","T6719C","G6743A","C6767A","T6769C","C6787G","C6807T","G6809A","A6837C","A6841C","A6865T","A6960G","T6961C","G6963C","-6968G","-6969A","-6970C","-6971A","-6972C","-6973A","-6974A","-6975A","-6980A","-6981G","-6982C","A6985T","A6989G","-6994A","-6995A","-6997T","-6998A","-6999C","-7002A","G7004A","A7102T","G7126A","A7148G","T7150G","A7152G","C7156T","C7159T","C7162A","G7373A","T7433C","T7579C","A7642G","A7668G","A7672G","T7690C","A7765G","A7782G","C7792A","A7818G","T7888G","A7898G","G7918A","G7937A","C7941A","C8005A","C8026A","G8052A","G8055A","G8102A","A8111G","G8173A","C8209T","T8215G","G8245A","A8255G","T8268C","A8273G","C8274T","T8292G","T8302A","A8311C","G8317A","A8367-","G8368-","T8375-","G8376-","G8377-","A8378-","A8447G","G8490A","T8495C","T8498C","G8554A","G8588A","T8595G","G8634C","G8666T","T8708C","G8717A","C8771T","A8780G","T8829A","A8852G","T8855C","A8870C","A8887G","A8893C","G8922A","A8950T","C8967T","A9135G"],"INT":["E11D","V31I","L45I","M50I","A59T","L74I","T112I","K160N","N222K"],"RT-p51":["E40D","K122E","I178L","E207A","K211R","P294T","M317T","K366R","A376T","S379C"],"RT-p66":["E40D","K122E","I178L","E207A","K211R","P294T","M317T","K366R","A376T","S379C","I517V"],"gp120":["A3T","D29N","E34D","N52D","K69E","D105-","N109W","T110N","N111I","N114K","S115T","-116D","-117N","-118K","-119T","-120E","-121E","-122E","I133V","M141V","Y145H","N158T","I166V","T174K","E183D","A191T","E241D","I244L","D251N","-281T","F289L","E294D","D297N","L305I","T308A","N311K","A318V","E319K","N328T","K329S","-372T","-373D","-376N","N378T","N379T","T380-","N432E","N433S"],"gp41":["V24M","K122R","N129S","N160S","D163E","K172R","N195K","K199E","A212T","P213Q","F241L","R250K","S251N","A267T","I270V","I318V","V322A","T324V","L330R"],"nef":["S9-","G12-","P25T","D50N","R71K","L85V","E98Q","E108D","C163S","E176D","Q182R","K184T","Y203F"],"p17":["G24V","K30R","I34V","G62R","T84V"],"p24":["E71D","H120N","Y169F","A208G"],"p6":["T22A","K33R","S50L"],"p7":["N5D","F6V","Q9R","K11R","K26R","R29K"],"rev":["V19I","S30N","H53N","L60I","C85Y","D88G","V109I"],"tat":["K12R","A21P","N24S"],"vif":["N19R","T20I","K31I","E37A","T67V","R95T","D134E"],"vpr":["V37M","S41G","E48D","I63T","L67M"],"vpu":["L7F","V14I","A15G","A16I","F27V","A63T","P76L"]},"labels":{"aa":"INT: E11D, V31I, L45I, M50I, A59T, L74I, T112I, K160N, N222K; RT-p51: E40D, K122E, I178L, E207A, K211R, P294T, M317T, K366R, A376T, S379C; RT-p66: E40D, K122E, I178L, E207A, K211R, P294T, M317T, K366R, A376T, S379C, I517V; gp120: A3T, D29N, E34D, N52D, K69E, D105-, N109W, T110N, N111I, N114K, S115T, -116D, -117N, -118K, -119T, -120E, -121E, -122E, I133V, M141V, Y145H, N158T, I166V, T174K, E183D, A191T, E241D, I244L, D251N, -281T, F289L, E294D, D297N, L305I, T308A, N311K, A318V, E319K, N328T, K329S, -372T, -373D, -376N, N378T, N379T, T380-, N432E, N433S; gp41: V24M, K122R, N129S, N160S, D163E, K172R, N195K, K199E, A212T, P213Q, F241L, R250K, S251N, A267T, I270V, I318V, V322A, T324V, L330R; nef: S9-, G12-, P25T, D50N, R71K, L85V, E98Q, E108D, C163S, E176D, Q182R, K184T, Y203F; p17: G24V, K30R, I34V, G62R, T84V; p24: E71D, H120N, Y169F, A208G; p6: T22A, K33R, S50L; p7: N5D, F6V, Q9R, K11R, K26R, R29K; rev: V19I, S30N, H53N, L60I, C85Y, D88G, V109I; tat: K12R, A21P, N24S; vif: N19R, T20I, K31I, E37A, T67V, R95T, D134E; vpr: V37M, S41G, E48D, I63T, L67M; vpu: L7F, V14I, A15G, A16I, F27V, A63T, P76L"}}}]}]},{"name":"CRF90_BF1_NODE_0000003","node_attrs":{"div":0.17029,"clade_membership":{"value":"CRF90_BF1"}},"branch_attrs":{"mutations":{"nuc":["G3334A","C4771A","G4861A","T5188A","A6932T"],"gp120":["T360S"],"tat":["H65R","S68T"],"vif":["A62D"],"vpr":["S28R"]},"labels":{"aa":"gp120: T360S; tat: H65R, S68T; vif: A62D; vpr: 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-72G"}}},{"name":"MN467100","node_attrs":{"div":0.20706000000000002,"accession":"MN467100","clade_membership":{"value":"B"},"country":{"value":"US"},"date":{"value":2016.0},"Strain_name":{"value":"2664_TEMRA_6"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C179-","A180-","G181-","T182-","G183-","G184-","C185-","G186-","C187-","C188-","C189-","G190-","A191-","A192-","C193-","A194-","G195-","G196-","G197-","A198-","C199-","T200-","T201-","G202-","A203-","A204-","A205-","G206-","C207-","G208-","A209-","A210-","A211-","G212-","T213-","A214-","A215-","G224A","G282A","C300T","A301G","A304T","A353G","G365A","G366A","A368T","T377C","A388G","G394A","G407A","T422C","T426C","T434C","A435T","G452A","G455A","C456T","A461G","C467T","G471A","A499G","G520A","A562G","G579A","C590G","C603A","A605C","G607A","G629A","T636C","C700T","C707T","C713T","G717A","C723A","A724G","C746T","T749G","C773T","A809G","G821A","T852A","C890T","G908A","T917C","C926T","A1002C","T1003A","G1005C","G1016A","A1025T","G1078C","T1172C","C1182T","C1220T","T1238C","A1250G","C1253T","G1268A","G1271T","G1313A","T1331C","A1339G","G1346A","A1349G","C1403T","C1406T","A1475G","T1482G","T1484G","A1488G","G1495A","G1499A","A1500G","C1501T","T1502G","A1528T","G1553A","A1664G","T1676C","A1691G","A1694C","G1718A","T1752C","A1781G","T1864C","C1986T","C1996T","T2011G","A2012G","A2023G","G2027A","G2058A","A2113G","G2117A","C2149T","T2195C","T2245C","A2290G","G2387T","A2400G","G2411A","G2428A","T2443C","T2458C","T2479C","A2498T","A2579G","G2580C","A2592G","A2617G","C2644T","C2671T","G2686A","A2693G","C2714G","G2725A","G2728A","G2847A","T2908C","A2925G","T2935C","C2953T","C3002T","G3004A","A3010G","G3019A","T3040C","A3064G","A3080G","G3093A","C3129A","T3132A","G3364A","G3427A","T3433C","G3473A","G3490A","G3523A","A3592C","A3622G","A3655C","C3665G","G3694A","C3712T","T3721C","A3768G","C3773T","A3794C","C3808A","G3836A","G3841A","C3843T","T3865C","G3878C","G3891A","C3940T","T3991C","A4076C","A4109G","T4117C","C4146A","A4148G","G4177A","C4180T","G4183A","C4195T","A4243G","G4252A","G4351A","A4384G","T4412C","A4474T","G4495A","A4525G","A4561G","A4643C","T4674C","A4677G","A4683G","A4688G","C4690T","A4693G","T4716C","A4721G","G4723A","T4727A","G4735A","A4774G","G4778A","A4811G","A4850G","G4862A","T4868C","A4888G","T4910C","A4949G","T4967A","T4976A","C5019T","C5034T","G5037A","A5048G","A5057G","C5086T","G5087A","G5093A","C5111T","G5123A","A5134G","G5167A","G5213C","G5225A","G5267A","G5273A","G5275A","T5354A","G5363A","A5397G","T5439C","C5444G","T5448A","A5462G","T5492C","C5552A","A5558G","C5563G","A5574G","T5576C","T5578C","C5615A","A5623G","T5624A","T5636C","A5659T","G5668A","G5700A","C5713G","C5727A","A5742G","T5788G","A5790G","A5793G","-5800A","-5805A","T5829C","G5839A","C5867A","A5869T","A5935C","T5974C","A6019G","T6026A","A6044G","C6115T","T6134C","A6142C","A6168G","-6170G","-6171T","-6172C","A6173C","-6175G","A6186G","A6188G","T6196G","T6202G","-6203T","-6204G","-6207A","A6208C","A6209T","-6210T","-6211T","-6212C","-6213C","-6215A","-6216T","-6217G","-6219A","A6222C","A6233C","C6262T","C6278A","G6329A","A6330G","T6400C","G6401A","G6403T","A6478G","T6511C","A6514C","T6523C","T6551C","A6576G","A6583G","A6602T","C6607T","A6648C","T6652C","C6670T","T6688-","A6689-","T6690-","A6691-","C6692-","A6693-","-6697A","-6698C","-6699A","-6700A","-6701A","-6702T","-6703G","G6716A","T6720G","T6721G","A6734G","T6735A","G6743A","A6754G","C6758T","A6765G","C6766G","T6769G","G6771A","A6773G","A6786C","A6789G","A6797G","C6800A","C6807T","A6812G","A6818G","A6820G","C6824A","T6828A","T6835C","T6838A","A6840C","A6842C","C6843A","T6849A","T6856G","T6860C","T6863G","C6864T","G6871A","A6900C","C6922T","C6935A","C6951G","-6956A","-6957T","G6963A","T6964G","C6966A","-6968T","-6969G","-6970G","-6971A","-6972T","-6973T","-6980G","-6982A","-6984C","-6985A","-6997G","A7007-","T7011C","C7014T","C7020A","C7045T","G7054A","A7090T","A7095T","T7099C","G7101A","A7102C","C7107T","C7124G","A7129G","A7133G","C7134T","A7152G","A7155G","C7156T","A7157C","T7159G","A7161G","A7177G","G7190A","G7197A","G7254A","G7256A","G7276A","A7313C","A7348C","A7373G","T7433C","G7440A","T7516G","G7517A","G7519A","A7533G","C7605G","C7625T","T7626A","G7627T","G7631C","T7642A","G7658C","A7668G","T7691A","T7708A","A7714C","G7720A","G7735A","G7754A","G7760A","A7761G","A7763G","A7796T","C7801A","T7813C","A7832G","G7846A","T7852C","T7853G","T7866G","A7873G","C7874T","G7937A","C7938T","C7941A","C7960A","A7992G","A8006G","G8007T","A8009G","G8018A","T8020C","T8035C","A8036T","C8047A","C8048-","T8049-","G8050-","C8051-","G8053T","C8056T","C8057G","T8064C","C8065G"],"INT":["K7Q","A21T","M22I","A23V","L28M","E35Q","S39N","I101L","T112A","T124N","T125A","I203M"],"RT-p51":["V8I","A98S","K102R","V106I","I135L","S162A","K166R","T200A","Q207E","S251N","K277R","I329V","G333E","P345Q","F346Y"],"RT-p66":["V8I","A98S","K102R","V106I","I135L","S162A","K166R","T200A","Q207E","S251N","K277R","I329V","G333E","P345Q","F346Y","D460N","Q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K7Q, A21T, M22I, A23V, L28M, E35Q, S39N, I101L, T112A, T124N, T125A, I203M; RT-p51: V8I, A98S, K102R, V106I, I135L, S162A, K166R, T200A, Q207E, S251N, K277R, I329V, G333E, P345Q, F346Y; RT-p66: V8I, A98S, K102R, V106I, I135L, S162A, K166R, T200A, Q207E, S251N, K277R, I329V, G333E, P345Q, F346Y, D460N, Q520H, Q524E, K558R; gp120: Q5N, L58M, N64D, D105G, -106V, -107Q, N108P, N111A, S114R, -116R, -117W, -118D, -119F, -120P, -121M, K123T, K127Q, Q142K, D159S, E183N, E241G, T250S, E265T, H280-, I281-, -282Q, -283M, A288T, F289W, D297N, H302Y, N304R, S306N, R307G, N311T, N312S, K315E, Q316K, A318V, K320E, R322G, Q324K, F325Y, N327-, I331Q, N334K, S336P, S337V, N349T, Q361K, T366S, -368I, N369E, -370N, -372K, -373T, -374E, -375E, -376S, -377E, -381E, -382T, -383I, D384-, T385-, I386-, T387-, P389Q, R412S, N414I, T416N, S418L, L424V, T427V, N433S, N434S, N435Q, E436G, D446N, R448K, G467E, V468I; gp41: I4A, R46K, V72I, K77R, T101S, L108Y, D109N, E110Q, D113E, E119Q, K122R, L130I, E151K, D153S, K154E, T165S, N166K, I177V, L184V, F188C, L191F, A212I, P213Q, D230G, G235V, R236G, D239N, I245F, D248E, L249-, R250-; p17: G11S, K18R, R20Q, R30K, I34L, V46I, E55G, G62E, K76R, V82I, Q90N, T122I, V128I, Q130R; p24: S41T, V86A, I91H, A92P, G116A, E180D, K203R; p6: S25P; p7: F6V, N8D, R10K, T12V, E21V; pro: I72V, V77I, R87K; rev: D11E, L13I, T15A, I18L, K20R, F21L, S30N, S54W, G57E, W58R, Y63L, A68-; tat: T23S, N24K, K29R, P59H, N61G, Q63E, V67A, S68P, P77S, P84Q; vif: R19N, Y30H, I31V, K33G, A35V, K36R, Y44H, S46N, R50K, K63R, H127Q, S130R, T167I, H183R; vpr: Q3*, D7N, V37P, G41S, A55T, V57I; vpu: P3H, I6E, V10A, V21I, Q36E, D40E, L61V, V65M, D78N"}}}]},{"name":"B_NODE_0000004","node_attrs":{"div":0.14568,"clade_membership":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C1220T","C1996T","G2470A","C2909G","A3196G","A3264G","C3303T","A3304G","G4150A","G4723A","A4888G","C5495A","C5567A","C5614T","T5626G","G5775A","A6326G","A6602T","-6703A","-6984C","C7024T","A7158C","A7373G","A8503C","A8739G","G9016A"],"RT-p51":["P272A","K390R","T403M"],"RT-p66":["P272A","K390R","T403M"],"gp120":["T250S"],"gp41":["D113N"],"p17":["K76R"],"tat":["T40K","T64N"],"vif":["S46N"]},"labels":{"aa":"RT-p51: P272A, K390R, T403M; RT-p66: P272A, K390R, T403M; gp120: T250S; gp41: D113N; p17: K76R; tat: T40K, T64N; vif: 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28N","M345T","T359S","Q361E","S365-","T366-","W367-","N369-","T371-","N378-","N379-","T380-","D384-","T385-","M398L","L414K","T416S","N432-","N433-","N434-","N435-","E436-","T437-","D446N","R448K","K482R"],"gp41":["I4V","M7L","A14T","T18A","V24I","R46K","K77R","I84L","A96T","D109E","E110Q","N113D","E119Q","L130I","E136S","E137A","N140L","K144Q","E148K","D153N","K154T","Q199K","H209R","A212N","R231K","R233T","G235I","S251N","R259H","L264I","A268V","I270T","E272G","A281I","Q290K","N298K","L304F","N305D","V321I"],"nef":["S8-","S9-","R21-","R22-","A23-","E24-"],"p1":["K4R","H9S"],"p17":["E55G","R76K","K91R","V94I","A119T","Q127P"],"p2":["N9S","S10Q","A11S","T12A"],"p24":["I91V"],"p6":["S3N","P11L","E19G","S25P","A39T"],"p7":["T12A","T50N"],"pro":["L63Q","I64V"],"rev":["D11Q","T14A","T15A","F21V","Y23H","S30K","Q51H","R53N","T62S","P67S","T82N","S99N","I102V","A108E","*117E"],"tat":["K29R","T39M","G42A","R57T","Q60R","N61S","Q63E","V67G","L69P","S70P","P77T"],"vif":["K33R","K36N","G37K","N46S","K91T","L109I","L125V","I128R","T151A","I154R","T155K","K157I","R159T","T167A","H192R"],"vpr":["T19A","S28N","V37P","Q66T","Q77L","R85P","S94R"],"vpu":["S3L","L4Q","Q5-","L7V","A15V","L27A","R41K","I43L","E48D","V65-"]},"labels":{"aa":"INT: V31I, K111Q, T112V, S119P, S230N; RT-p51: K103Q, K122E, S162C, K211H, A272P, I329V, G333E, Q334H, F346Y, T377I, R390K; RT-p66: K103Q, K122E, S162C, K211H, A272P, I329V, G333E, Q334H, F346Y, T377I, R390K, L452S, L517I, I556V, K558R; gp120: S1N, E4N, T21N, D34S, T35A, V37A, V56E, N64D, I80V, T100N, -106A, -107N, N109A, T110N, N111A, N113-, S114-, S115-, G124R, E125D, M126I, I133V, D139N, Y149N, K150T, D157-, N158-, D159-, N160-, T161-, S162-, V172T, Q175H, D202N, K204M, T208S, V242I, Q259H, E262A, I281M, Q300R, T308E, N312K, A318V, -326G, N327H, -328N, M345T, T359S, Q361E, S365-, T366-, W367-, N369-, T371-, N378-, N379-, T380-, D384-, T385-, M398L, L414K, T416S, N432-, N433-, N434-, N435-, E436-, T437-, D446N, R448K, K482R; gp41: I4V, M7L, A14T, T18A, V24I, R46K, K77R, I84L, A96T, D109E, E110Q, N113D, E119Q, L130I, E136S, E137A, N140L, K144Q, E148K, D153N, K154T, Q199K, H209R, A212N, R231K, R233T, G235I, S251N, R259H, L264I, A268V, I270T, E272G, A281I, Q290K, N298K, L304F, N305D, V321I; nef: S8-, S9-, R21-, R22-, A23-, E24-; p1: K4R, H9S; p17: E55G, R76K, K91R, V94I, A119T, Q127P; p2: N9S, S10Q, A11S, T12A; p24: I91V; p6: S3N, P11L, E19G, S25P, A39T; p7: T12A, T50N; pro: L63Q, I64V; rev: D11Q, T14A, T15A, F21V, Y23H, S30K, Q51H, R53N, T62S, P67S, T82N, S99N, I102V, A108E, *117E; tat: K29R, T39M, G42A, R57T, Q60R, N61S, Q63E, V67G, L69P, S70P, P77T; vif: K33R, K36N, G37K, N46S, K91T, L109I, L125V, I128R, T151A, I154R, T155K, K157I, R159T, T167A, H192R; vpr: T19A, S28N, V37P, Q66T, Q77L, R85P, S94R; vpu: S3L, L4Q, Q5-, L7V, A15V, L27A, R41K, I43L, E48D, 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E11D, S24N, S39R, A91T, I113V, S119P, T206S, S230N; RT-p51: K20R, S105A, I202V, E204D, M245V, E248D, K281R, V293I, V317A, S322E, Q334E, M357T, T386V, T403I, E404D; RT-p66: K20R, S105A, I202V, E204D, M245V, E248D, K281R, V293I, V317A, S322E, Q334E, M357T, T386V, T403I, E404D, E449D, V467I, T470M, H483Y, I517V, A554N, V559I; gp120: A3G, E4N, Q5W, L6-, T35P, V57L, -107T, N108S, N113T, S136H, I137T, K143T, E144A, Y145-, K150N, V154E, T174R, N201R, K203T, E241-, I242V, S263T, N267D, T269I, H280N, A291T, T292K, G293A, D294I, S306T, R307K, N311E, N312D, R322S, -326Q, T330S, V332T, T360S, Q361K, N364H, S365K, -368N, N369S, -370S, -372K, -373T, -375E, -376A, N378S, -379N, -380G, -381N, R412A, Q414P, R416S, S418V, N435D, E436D, T439I, K462R; gp41: M54L, A101N, K106N, D109G, M115L, D125S, D129A, L130Q, T133S, Q147K, N160T, T165S, L210H, A212V, P213A, H258R, R259Q, D262N, L265S, V267A, V322G, G326W, R334T; nef: G3S, R8S, -10V, -11V, E18D, A49S, A83S, E93D, I101V, Y102W, K105R, V114I, H116N, Y135F, V148D, E155K, G159R, N161D, C163R, M168E, Q170L, R178K, M182R, K184R, H192K; p1: H9S; p17: L8I, R15K; p2: S5N, V7M, N9G, A11V, T12M, I13-; p6: T23A, E29G, P30-, I31-, K33Q, L35K, K42R, S50L; p7: R7K, K11R, T12A, N27H, K47R; pro: N37S, H69Q; rev: D9E, D11E, K14N, L18V, P31R, Q53R, T62N, L78I, R80K, D84N; tat: R7E, D61H, T64S, S68P, A74T, S75T, P77S; vif: R19K, K37N, R41K, S46N, A62S, I66V, D78E, Q105R, S118T, I124L, S130R, Y147H, R167K; vpr: S28R; vpu: P3T, L7V, L27F, A63T, E66D"}}},{"name":"KT124779","node_attrs":{"div":0.20632,"accession":"KT124779","clade_membership":{"value":"B"},"country":{"value":"DE"},"date":{"value":2010.0},"Strain_name":{"value":"556743"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["A371T","A380G","A386G","T396C","A423C","T426C","C467T","T485G","G491A","A494T","A499C","T506C","G508A","C525T","A530C","G542A","A566T","A578C","G607A","G612A","A618G","A620C","T641G","A652C","G656A","C662T","A663G","A697G","G712A","C713T","G740A","T858C","C872T","A881G","A959G","A986G","T1052C","A1151G","C1211T","C1220T","C1253T","C1316T","T1322C","A1346G","A1382T","C1406A","T1421G","T1422C","A1442G","A1458G","G1476A","T1482A","T1502A","T1511C","G1532A","C1535T","A1543G","G1562A","A1691G","A1719-","G1720-","C1721-","T1722-","T1723-","C1724-","A1725-","G1726-","G1727-","T1728-","T1729-","T1730-","G1731-","G1732-","G1733-","G1734-","A1735-","G1736-","G1737-","A1738-","G1739-","C1741T","C1744T","A1745G","T1752C","G1763A","A1781C","G1840A","C1913A","C1987T","A1988G","C1996T","T1999C","A2002G","A2023G","C2044T","C2080T","C2083T","T2101C","A2113T","G2173A","A2216T","A2242G","C2263T","T2269C","G2422A","T2440C","C2467T","G2470A","T2485C","T2494C","A2519G","T2536C","T2542C","A2579T","C2596T","T2597C","A2614G","T2638C","C2708T","C2714A","T2724G","G2728A","A2738G","C2739A","A2755G","G2828A","T2829A","G2869A","C2909G","A2920G","A3001G","A3031G","A3071G","A3096T","A3130T","G3162A","A3196G","C3223T","G3236A","T3252C","A3264G","T3266C","C3346T","G3364A","G3379A","A3400G","T3445C","A3447G","G3477A","A3487G","G3490A","T3493G","T3497A","T3550C","T3644A","A3655G","G3694A","T3778C","A3781G","A3805C","G3925A","C3940T","A3949G","G3961A","C3976T","A4012C","A4060G","T4075C","A4076C","G4150A","G4177A","T4258C","G4366A","A4432G","C4475T","A4567G","A4570T","A4643C","G4659A","G4673A","T4674C","C4728A","C4820T","G4829A","A4860G","G4861A","A4888G","C4890T","T4912A","G4913A","A4937G","T4943C","A4950C","T4952A","T4959G","G4966A","A4968T","A4976C","C5006A","C5027T","C5034T","A5042C","A5059G","A5096G","G5143A","C5145G","T5147G","C5162A","T5170G","G5187A","A5215C","T5237C","A5330G","A5355-","C5356-","T5357-","G5359A","A5362C","G5363A","A5446C","A5447C","T5487C","C5495A","A5496G","A5556G","C5563A","T5576C","G5599A","A5613C","A5622G","T5627C","G5653A","C5678G","G5685A","A5721G","G5729A","A5746G","G5747C","G5775A","C5797T","T5799-","T5801-","G5802-","G5803-","G5808-","-5812G","-5813T","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","G5858A","C5878A","G5882A","C5916A","C5956T","G5963A","T6007C","A6030G","T6049C","G6088A","T6101C","A6113G","C6153A","T6154G","-6174G","-6175G","A6179G","-6180A","G6195T","T6196G","A6200G","G6201A","-6204C","-6210T","-6214A","G6218-","G6220-","A6221-","G6224-","G6225-","A6226-","G6227-","A6228-","A6229-","A6230-","T6231-","A6232-","A6233-","A6234-","A6235-","C6238T","T6242A","C6253T","C6262A","A6263T","A6269G","A6270G","T6271G","A6273C","G6274T","A6275-","T6276-","G6277-","C6278A","A6281C","-6287A","A6288G","T6289G","A6292G","C6293A","T6299A","C6318T","G6323A","A6324G","A6330G","T6331G","A6333C","T6334A","G6339T","C6340G","G6349A","A6353C","G6354A","T6355C","A6374T","G6392A","C6397A","A6403G","T6424C","G6451A","T6493C","G6526A","G6578A","G6604A","G6647C","A6649G","A6734G","T6735A","A6736T","A6770T","T6772A","A6779C","C6790T","A6799C","A6801G","A6803G","A6820G","-6830A","-6831G","-6832G","A6836-","A6837-","T6838-","C6892T","C6894A","-6957G","G6963C","-6968T","-6969G","-6972A","-6975C","-6978C","-6979A","-6983T","-6985A","A6992-","C6993-","T6994-","G6995-","T7003-","-7004G","-7009G","C7012T","C7020A","C7024T","G7026A","A7088C","T7099A","G7101A","A7102G","C7124T","A7151G","C7153G","T7159C","A7161G","A7169G","G7181A","G7182T","G7197A","G7198A","A7237T","A7238C","G7246A","A7306G","A7315G","A7348G","A7373G","A7376G","T7433A","G7453A","C7463A","G7552A","A7604G","C7625T","T7626A","G7627T","G7628T","A7629C","G7630A","T7642A","C7651A","G7666A","T7675C","C7678T","G7688A","A7690T","A7743T","A7744C","G7759A","G7790A","C7792T","A7799G","A7832G","G7835A","A7846G","G7857A","T7888C","A7915G","C7941A","C7951A","A7963C","G8001C","A8008G","G8017A","A8032G","C8047T","T8112C","C8171A","G8204A","T8209C","T8227C","T8268C","A8276G","T8279G","A8308G","G8317A","T8321G","T8322C","G8330T","C8331T","G8354A","T8366A","-8370A","-8374G","A8396G","G8404A","C8406A","G8407A","T8426G","C8460T","G8476A","C8480T","T8505G","G8506T","T8507A","G8528A","G8554C","T8595G","C8640T","A8642G","T8646C","T8666A","T8685C","G8789T","G8795T","C8796A","G8830C","T8832C","A8851G","G8852A","T8864C","A8874G","G8882A","G8929A","A8932T"],"INT":["E10D","M50I","I101L","L234F"],"RT-p51":["E6D","M41L","I142V","S162C","Q207K","L210W","T215D","M245K","P272A","I326V","Q334L","R356K","V381I","K390R"],"RT-p66":["E6D","M41L","I142V","S162C","Q207K","L210W","T215D","M245K","P272A","I326V","Q334L","R356K","V381I","K390R","K451R","R461K","S468T"],"gp120":["A2T","V10I","T21N","V37I","E59G","S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E10D, M50I, I101L, L234F; RT-p51: E6D, M41L, I142V, S162C, Q207K, L210W, T215D, M245K, P272A, I326V, Q334L, R356K, V381I, K390R; RT-p66: E6D, M41L, I142V, S162C, Q207K, L210W, T215D, M245K, P272A, I326V, Q334L, R356K, V381I, K390R, K451R, R461K, S468T; gp120: A2T, V10I, T21N, V37I, E59G, S87G, T100K, D105N, -106V, -107R, S109D, S114M, -116D, -117T, -118S, -119M, -120T, G124-, E125-, I126-, K127-, S130T, S136K, I137L, N139G, K140T, M141K, K143-, Y145R, L147I, Y149N, P155L, D157S, D159G, N160T, S162M, S167H, T174S, V180I, E265Q, K309Q, K315N, Q316R, I317V, -326R, T347N, -368S, -370A, -372W, -373N, -375T, -376G, -384D, -385T, P389Q, R391K, R416K, N433E, E436G, T439V, G443I, R448K, K462Q; gp41: M24V, T25A, L44M, L108Y, D109S, D113E, D129N, Q147L, N157S, D163N, N166E, I177V, V178I, R185K, H209R, P213Q, E220D, R233T, G235R, I270T, Q290K, V301I, V322A, I325V, L340A, A343F; nef: -10M, -11G, R21K, R22K, D28E, H40Y, S45N, C55V, R71T, L85V, Y102H, D108E, Y115H, E151D, Q152K, C163S, Q170R, R178G, M194V, R196K, E197V; p17: E12D, R30Q, E55A, R58K, Q65H, R91K, E93K, K95D, D102E, E106A, K110E, D121G, S126N; p2: T12A; p6: S14I, F15M, R16-, F17-, G18-, E19-, E20-, T21-, T22-, S25P, E34D; p7: G4S, F6I, K26R; pro: P39T, I64V; rev: K14R, F21L, Q51H, T54A, D57N, T62D, P67S, A108E; tat: N24P, T39I, T40K, A58P, Q63K, V67A, P81Q, K85T; vif: R19N, V25I, M29I, Y30H, H48N, R92E, D101G, L109Q, N122Q, L125V, R127H, I128L, N140K, K158R, S186N, H187E, H192Q; vpr: P14R, Y15D, L20I, S28N, Y45H, T84Q, Q86R, R88A, A89R; vpu: L7A, A16T, T24S, I28L, R41K, 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D78N"}}},{"name":"AB287366","node_attrs":{"div":0.21448,"accession":"AB287366","clade_membership":{"value":"B"},"country":{"value":"JP"},"date":{"value":2005.0},"Strain_name":{"value":"DR7060"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["A47G","C152T","G206A","G265A","C281A","G354A","T396C","A419G","A435T","T495A","A521G","A530G","G542A","T635C","C747A","T749G","T824C","C827T","A839G","T852A","C926A","G963T","A968C","G987C","A1074G","G1077A","A1079C","A1090G","C1118T","A1127G","G1205A","C1220T","G1388A","A1415G","T1421C","T1444C","T1452A","G1455A","A1458G","G1477A","T1481G","A1485G","A1528T","T1559C","A1588G","C1598T","G1619C","G1621A","T1676C","G1769A","C1775A","G1784A","A1804G","A1819G","A1839G","G1846A","A1852G","A1915G","A1930G","C2003A","T2005G","G2009A","G2027A","C2080A","T2158C","A2215G","A2230G","C2281T","C2353T","A2419G","G2422A","G2428A","T2443C","A2459G","G2518A","A2519C","T2608C","A2623G","C2635T","G2656A","A2726G","A2727G","C2749T","A2764G","T2829A","G2902A","A2929T","G2984A","A3001G","G3046A","A3080G","C3095A","A3097C","A3124G","A3136G","G3173A","A3193G","C3225A","C3232T","T3252C","T3266C","T3328C","A3439G","A3443T","T3497C","G3520A","G3523A","T3530C","A3535G","C3542T","G3553A","T3613A","A3703G","A3727C","T3754C","G3755T","T3829C","C3843T","T3853C","G3859A","T3904C","T3943C","G3961A","C3976T","A3982G","A3985G","A4012T","A4060G","A4076C","A4105G","A4145G","A4174G","A4178G","G4267A","G4294A","A4306G","A4384G","C4543T","G4582A","A4683G","G4694A","T4702C","G4708A","C4726G","A4737G","G4741A","A4748G","A4760G","A4782G","A4857G","G4881A","A4882C","C4898T","T4910C","T4925C","A4937C","T4952G","A4956C","G4966A","T4969G","A4976T","T4988C","A5012G","T5016A","G5040A","A5046G","A5049G","A5059G","T5062G","T5073C","A5085G","G5086C","G5100C","A5103C","G5176A","A5179G","T5188A","T5194A","A5200G","C5213G","A5233G","C5242A","T5292C","A5312G","A5330G","A5335G","T5354C","A5355C","G5359A","G5370A","A5397T","G5427A","A5448T","T5487C","A5491T","A5493G","A5494T","G5501C","C5502A","C5511T","T5515C","C5554A","G5557A","A5558G","A5587G","A5601G","C5611T","A5612C","A5613T","T5616A","T5617C","A5619G","C5620T","A5622T","G5629A","A5643T","G5653A","T5669C","G5673A","A5680G","C5713G","G5730A","G5747C","-5800G","-5805G","C5917T","A5965G","T6007C","G6023T","A6092G","C6097A","T6100C","T6134C","T6160C","A6167G","-6170T","-6171A","-6172T","-6174A","-6180G","A6186C","C6190T","G6201A","T6202C","-6203T","-6204T","G6207A","A6209-","G6211-","-6218G","-6219A","-6222A","-6223G","T6242A","G6261T","C6262G","A6275C","T6276A","G6311A","T6315C","A6320G","A6324G","T6325G","A6326G","A6344G","T6345C","G6368A","T6369C","T6385C","A6394G","G6425A","C6427A","A6443C","G6466T","A6476T","A6489C","G6547A","C6563A","A6574T","A6584G","A6587C","A6602T","A6605G","T6637C","G6638A","A6639G","A6640G","G6644A","G6647C","A6649C","C6673T","G6743A","A6767C","A6781C","A6809G","T6810A","G6819A","-6830G","-6831G","-6832G","A6833G","-6835G","T6849A","C6850A","T6856G","A6858C","A6865G","C6894G","C6935G","A6936G","G6940A","A6947G","G6948A","C6951G","T6953A","G6954T","-6957T","T6958G","G6963A","G6970-","T6976-","A6986-","T6988-","-6997A","-6998G","-6999G","-7000T","T7003-","T7006C","-7008A","-7009C","A7010C","A7021G","G7048A","A7088C","C7124T","T7144A","T7147A","A7154G","A7155G","G7160A","G7162A","C7165T","C7171T","G7190A","G7197A","G7246A","A7256G","A7275G","G7276A","A7315G","A7376G","T7433C","G7440A","G7517A","G7519A","G7589A","A7607T","G7608C","T7622A","C7625T","T7626A","A7627T","G7631A","T7642C","G7660A","A7689G","A7690C","C7702T","T7715G","G7720A","G7759A","C7770A","A7771C","A7799C","T7813C","A7846G","A7868G","G7885A","C7906T","T7968C","A7971G","A7998G","G8001C","C8005A","A8006G","A8008G","C8044G","C8051T","G8052T","G8114C","T8155C","T8210C","T8214A","G8242A","T8268G","T8281G","A8288T","A8323C","G8365T","T8369A","G8372-","T8375-","C8383A","A8441C","G8446A","A8455C","A8468G","A8469C","G8531T","G8537C","C8590G","T8603C","C8687T","T8740C","C8809T","A8812C","A8823G","T8829G","G8830T","T8832C","G8846T","G8848A","C8849T","G8888A","G8922A","G8924C","C8975G","T8976A","T9012C","C9017T","T9051A"],"INT":["A23V","I101L","T124A","I135V","I203M"],"RT-p51":["K122E","I142L","K211G","Q278H","E297K","I329V","Q334N","A360T","T377K","I386T","T403M"],"RT-p66":["K122E","T135I","I142L","K211G","Q278H","E297K","I329V","Q334N","A360T","T377K","I386T","T403M","T450S","S468P","H483Y","A554S"],"gp120":["V57L","I80V","-106Y","-107N","N111T","-116N","-117L","-118K","-122E","-123K","S130T","S136M","K138E","M141Q","Q142K","V153I","V154A","I156V","D157G","N158G","M164A","V172T","A191T","I197L","N201K","K204N","T208S","K212T","L237I","E240D","I244V","T250S","N251D","E262R","V264I","E265H","D297N","I305L","K309D","I319E","R322K","-326G","N327E","V332K","Q335P","T347S","Q361G","S365D","T366S","W367M","-368L","-370D","-376G","-377N","-379L","I386-","T387-","R412Q","N434G","E436K","D446N","R448K","I468V","K474R"],"gp41":["T25A","R46K","V72I","A96T","A101T","S107T","L108Y","D109E","E110K","D129G","S138A","A156D","N166Q","T189A","I222T","E223G","D232G","R233T","D247E","R250L","V271L","F304Y","V322G","G326W","I329F","L340F"],"nef":["R8L","S9R","S14D","R35Q","E38A","I43L","E63D","E65D","A83G","V133T","A156V","N157T","N161D","C163V","M168I","S169N","V182I","M194I"],"p17":["V7I","I34L","S54T"],"p2":["V7A","S10T","A11T","T12A"],"p24":["L6M","S41T","A78S","E79D","V86P","I115V","A116T","N120S"],"p6":["D32E","K42R","N47S"],"p7":["G4D","N5K","R7G","E21V","K41R","E51D","R52K"],"pro":["K14R","H69K","A71T","V77I"],"rev":["T15A","Q51H","Q53R","K54A","R66G","A68V","C89S"],"tat":["R7S","K24N","I39L","T40S","G42A","Y47H","Q60K","D61S","K71E","S87P"],"vif":["K33G","V39S","R41K","T47S","I51V","S52N","I66V","K91E","S95R","D99T","E117D","N122K","I124L","R127H","I128R","S144T","A152T","I154V","T155A","K158R","I159R","R167A","D172H"],"vpr":["S28R","P37A","I63T","I70V","I84L","R85Q","A89T"],"vpu":["Q2S","P3Q","Q5Y","A8T","L12F","A16T","V21A","I25V","Q36E","R47T"]},"labels":{"aa":"INT: A23V, I101L, T124A, I135V, I203M; RT-p51: K122E, I142L, K211G, Q278H, E297K, I329V, Q334N, A360T, T377K, I386T, T403M; RT-p66: K122E, T135I, I142L, K211G, Q278H, E297K, I329V, Q334N, A360T, T377K, I386T, T403M, T450S, S468P, H483Y, A554S; gp120: V57L, I80V, -106Y, -107N, N111T, -116N, -117L, -118K, -122E, -123K, S130T, S136M, K138E, M141Q, Q142K, V153I, V154A, I156V, D157G, N158G, M164A, V172T, A191T, I197L, N201K, K204N, T208S, K212T, L237I, E240D, I244V, T250S, N251D, E262R, V264I, E265H, D297N, I305L, K309D, I319E, R322K, -326G, N327E, V332K, Q335P, T347S, Q361G, S365D, T366S, W367M, -368L, -370D, -376G, -377N, -379L, I386-, T387-, R412Q, N434G, E436K, D446N, R448K, I468V, K474R; gp41: T25A, R46K, V72I, A96T, A101T, S107T, L108Y, D109E, E110K, D129G, S138A, A156D, N166Q, T189A, I222T, E223G, D232G, R233T, D247E, R250L, V271L, F304Y, V322G, G326W, I329F, L340F; nef: R8L, S9R, S14D, R35Q, E38A, I43L, E63D, E65D, A83G, V133T, A156V, N157T, N161D, C163V, M168I, S169N, V182I, M194I; p17: V7I, I34L, S54T; p2: V7A, S10T, A11T, T12A; p24: L6M, S41T, A78S, E79D, V86P, I115V, A116T, N120S; p6: D32E, K42R, N47S; p7: G4D, N5K, R7G, E21V, K41R, E51D, R52K; pro: K14R, H69K, A71T, V77I; rev: T15A, Q51H, Q53R, K54A, R66G, A68V, C89S; tat: R7S, K24N, I39L, T40S, G42A, Y47H, Q60K, D61S, K71E, S87P; vif: K33G, V39S, R41K, T47S, I51V, S52N, I66V, K91E, S95R, D99T, E117D, N122K, I124L, R127H, I128R, S144T, A152T, I154V, T155A, K158R, I159R, R167A, D172H; vpr: S28R, P37A, I63T, I70V, I84L, R85Q, A89T; vpu: Q2S, P3Q, Q5Y, A8T, L12F, A16T, V21A, I25V, Q36E, 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R324G, A328G, I332V, T334I, A343L; nef: R8L, -10R, I43L; p17: R15K, S54A, K76R, V84T, V94I, D102E, S111R, K114-, A118T, T122A, G123A, N124D, S126N, Q127K; p2: V7I, T8I, S10T, I13T; p24: I15L, E75D, E79D, I91V, N120S, T148V, S178T; p6: S3N, T23-, S25P, I31T, K42R; p7: K11R, K20R, R29K; pro: K20R, V77I, L89M; rev: S5R, D11E, F21Q, L22I, R41Q, Q53R, S61T, A68T, E69D, P72D, D88G, I102V, E111D, S112T, K115E; tat: Y47N, P58T, V67A, S68D, L77F; vif: H27Y, M29K, I31R, K33G, K37E, A62S, I66V, S118A, N122Q, R127H, S130R, D134N, R167S; vpr: D7N, S28R, H40G, G41N, A55T, L67M, R77H, T84I, A93S; vpu: L4P, Q5E, A8T, V15A, A16I, I18L, 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D6S, K7A, S17N, V32I, I72V, V151I; RT-p51: K122E, D123N, I142V, T165I, E169D, I180V, I202V, Q207K, P294T, S322T, Q334N, G335D, R356K, A400T; RT-p66: K122E, D123N, I142V, T165I, E169D, I180V, I202V, Q207K, P294T, S322T, Q334N, G335D, R356K, A400T, T470M, H483Y, L491S, K527Q, V531I; gp120: Q5E, T21N, D34S, V37A, V57R, N64K, Q86E, T100A, D105-, S109C, T112A, N132W, S136Q, K143R, Y145H, K150A, V153I, N158S, D159S, T161N, S167N, V172I, T174K, A196S, K204Q, E240G, T255N, E265I, P285W, A288T, F289L, H302Y, K309H, E311G, N312R, K315E, R322N, -326T, Q335R, P341L, V344R, G351R, T360S, Q361K, S365G, -368Y, -370V, -372H, -373K, -375E, -376N, -377G, -379D, -380N, -381E, -385T, K404R, R412A, R416N, L425I, N433E, N434S, N435A, E436P, T437E, T439I, I468V; gp41: V2I, M24L, Q32L, M54I, E110K, D129E, L130E, N133K, E137A, E148D, N160D, D163N, N166Q, I193L, V197C, Q199E, P219L, I222T, A243P, C253F, V267L, R276H, A281I, S293G, Q294R, A306F, T307I, V321T, V322L, G326F, I329F; nef: -10R, -11D, S14A, A15N, 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D74L"}}},{"name":"KT427740","node_attrs":{"div":0.21956000000000003,"accession":"KT427740","clade_membership":{"value":"B"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_PE019"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C151A","T153C","T163G","T200C","G224A","A256-","A369C","A398G","G407A","A417C","A499G","G508A","C516A","C525T","T570C","T593C","C603A","A604T","A605G","T614C","C623T","C641T","G644A","G678A","G693A","G696A","C707T","G709A","T718G","T734C","T749C","G818A","A903G","A938G","G987C","T988C","G989A","T992G","G1019A","A1025C","T1058C","G1067A","G1077A","G1078C","A1124G","C1136T","T1148C","C1182T","A1265C","G1271T","T1335C","A1349G","C1350A","C1354G","C1362T","C1439T","C1459A","G1476A","T1481C","G1495A","A1498G","C1523T","T1547G","G1568A","G1589A","C1598T","A1622G","T1628G","A1644C","A1715G","A1746G","G1769A","T1771A","T1790C","A1839G","G1920A","A1926G","A1982G","C1987T","A2002G","C2098T","A2152G","A2200G","T2269C","G2341A","T2347G","A2350G","C2353T","C2356T","T2365G","A2396G","G2411A","C2420T","T2440C","C2464A","G2470A","C2503T","A2569G","C2596T","A2617G","C2626G","G2660A","T2672C","G2710A","A2726C","T2770C","T2829A","G2830A","T2873C","A2882G","A2884G","G2887A","T2899C","A2925G","A2950G","A2956G","A2985T","C3013T","G3016A","C3023T","T3045C","G3093A","A3103G","A3107T","A3130T","G3188A","A3196G","G3221T","G3236A","A3264G","T3266C","C3303T","C3352T","T3355C","A3367G","T3368C","T3399C","C3496T","T3497C","T3544C","T3551C","G3685A","C3692G","A3819T","A3862G","C3908A","C3922T","A3937G","T3946C","C3962T","A3988G","A4063C","T4075C","C4110G","C4132T","T4135C","C4146A","T4153C","G4183A","T4234C","A4264G","T4316C","A4376G","G4467A","T4498C","A4519G","G4539A","T4540G","G4555A","A4570C","T4606G","A4643C","C4665T","T4670C","G4684A","T4702C","T4703C","A4721C","C4726A","G4735A","A4751G","G4835A","A4838G","T4842G","G4856A","A4858G","G4887A","C4890T","C4902T","T4952A","C4965G","G4966A","T4969G","A4976C","T4988A","C5019T","G5024A","A5037G","C5062A","A5063T","A5069T","T5084C","G5086A","A5127G","A5128G","G5225A","A5282T","T5292C","C5294T","T5311C","C5321T","A5336C","C5356T","A5360G","A5376C","A5431G","C5445A","T5466C","T5484C","A5493G","C5495A","G5501C","A5560G","C5563A","A5564C","G5565A","A5566G","C5569A","T5576G","T5577C","C5602T","C5611G","A5613T","T5617A","T5636C","C5679T","C5686A","C5688A","T5689A","A5694G","T5697C","G5730A","T5731A","G5737A","A5746G","G5747T","T5778C","T5791G","-5800G","-5802G","-5804A","-5805G","-5806A","-5807T","-5809G","-5810G","C5827G","G5845A","G5856A","T5857A","A5868C","T5870C","C5924T","A6016G","G6037A","A6044G","A6066G","T6085G","G6088A","A6092G","T6166C","A6173-","-6180T","A6186C","G6198A","-6203A","-6204C","A6212G","-6213A","G6220A","G6225A","A6229G","C6253A","A6268C","G6277A","C6278A","A6282T","A6286C","A6304G","A6316G","A6327C","G6349A","T6351C","A6376C","G6466A","A6484C","C6499T","A6544G","G6604A","A6628G","G6631T","G6634C","T6637C","G6638A","A6639C","T6641A","T6643A","A6649T","A6654C","A6659G","C6660T","C6673T","G6712A","A6734C","C6752A","T6772C","A6779G","A6788G","A6803G","T6810A","A6820G","A6826C","A6833-","A6837G","G6848A","T6849G","T6856G","A6859G","A6881G","C6894G","T6896G","A6937G","T6958-","-6963A","T6964A","T6967A","A6971C","-6972T","-6973G","A6974G","-6975A","-6977G","-6978A","-6979T","-6983A","-6985T","T6988A","-6989A","-6998A","-6999C","-7000A","-7002G","-7004A","A7007-","A7032G","A7040G","C7045T","G7047A","A7088C","A7132G","A7149G","C7153A","C7156T","T7159C","C7161G","C7164G","G7182C","T7228C","A7234G","G7246A","A7275G","G7281T","G7291A","C7311G","C7313A","A7322G","A7348G","G7375A","A7376G","T7386C","G7426A","C7480T","G7492A","G7501A","G7534A","C7590G","G7594A","T7622A","C7625G","G7668A","A7689G","A7690T","G7735A","A7763C","T7844C","A7847G","A7858G","G7862A","C7898A","T7932C","C7938T","C7939T","C7951A","A7962G","A8002G","A8029C","G8050A","C8065T","A8076G","A8086C","T8103C","G8105A","T8112C","C8146T","T8155C","T8156C","G8157T","T8164C","C8165A","C8167T","A8193G","A8196C","T8206C","C8221T","T8279G","T8290C","T8292G","A8297G","A8323T","G8329A","G8330A","C8331G","G8335A","G8356T","G8368T","-8370G","-8374G","C8386T","G8402A","A8516T","T8543A","G8588A","T8595G","T8613A","C8631A","A8635G","A8636G","C8640A","T8641A","A8642C"],"INT":["Y15F","L45I","E96D","T112R","T124N","F181L","I201V","R231K","S255K"],"RT-p51":["K101E","V106I","D123E","D177E","V189I","K211Q","M245K","K263E","K277R","E297V","V317A","G333E","T338S","V365I","A376S","V381I","K390R","T403I","V435A"],"RT-p66":["K101E","V106I","D123E","D177E","V189I","K211Q","M245K","K263E","K277R","E297V","V317A","G333E","T338S","V365I","A376S","V381I","K390R","T403I","V435A","S468P","L533V"],"gp120":["S1K","Q5P","V57L","N64D","N71S","H77Q","I80V","D105N","S109V","N111T","S115N","-116S","-117T","-118R","-120E","-121G","-123K","G124E","K138N","Q142K","K143L","E144D","K150T","N158T","I166T","Q259H","E262T","S263T","E265N","N267T","T269V","K294Q","Q300K","K309D","N312D","I317V","I31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Y15F, L45I, E96D, T112R, T124N, F181L, I201V, R231K, S255K; RT-p51: K101E, V106I, D123E, D177E, V189I, K211Q, M245K, K263E, K277R, E297V, V317A, G333E, T338S, V365I, A376S, V381I, K390R, T403I, V435A; RT-p66: K101E, V106I, D123E, D177E, V189I, K211Q, M245K, K263E, K277R, E297V, V317A, G333E, T338S, V365I, A376S, V381I, K390R, T403I, V435A, S468P, L533V; gp120: S1K, Q5P, V57L, N64D, N71S, H77Q, I80V, D105N, S109V, N111T, S115N, -116S, -117T, -118R, -120E, -121G, -123K, G124E, K138N, Q142K, K143L, E144D, K150T, N158T, I166T, Q259H, E262T, S263T, E265N, N267T, T269V, K294Q, Q300K, K309D, N312D, I317V, I319K, Q324H, -326S, N327-, V332S, N334K, I343V, T347S, F348V, N369-, T371-, T374-, -379E, -380T, -381Q, -382L, -383D, -384D, -385W, K393R, I396V, R398K, R412Q, R416K, N432S, N433K, E436G, T437S, G443A, K474R, R476I; gp41: T3G, L4I, M7V, M24I, T25A, V28A, S107T, L108V, R122K, D129G, K154Q, N166K, I182V, V187I, Q199K, L210P, T212V, E220G, L242F, H258R, R261S, V267A, A268T, I270T, W285L, L288I, K297R, N298T, L330R, I332V, L340F, A343S; nef: W5L, S9I, -10G, -11G, A15V, M20I, L85V, L91I, L97M, E98G, L100N; p1: I5L; p17: K12Q, K28Q, R30K, E55G, R58K, L61M, Y79H, Q90M, A115T, A120T, D121N, S125N, V128G; p2: T12N; p24: T58A, V86P, H87Q, M96I, G116T, E180D, P207T, A208G; p6: T23A, I31K; p7: G4S, R10K, K11R, N27K; pro: K14R, R41K, K43R, I62V; rev: R17Q, F21A, P31S, I52V, S61R, A68T, L73F, S86N, P100S, L103P, S106H, P107S, E116D; tat: R19G, T40K, G42A, S62G, Q63T, T64A, H65N, V67G, S75P, P77F, P81Q, K85E; vif: V7G, R19N, H27Y, K37E, V39A, E45D, T47N, R50K, S86A, K91R, R92K, D101N, N122K, R127D, I128R, D134E, T151A, T159N, R167K, K181G; vpr: Q8R, I60L, I63T, R77H, T84I, N91H; vpu: L4I, I7V, V10A, L27I, L42I, D44N, R47V, S62A, 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H73N"}}},{"name":"MF373127","node_attrs":{"div":0.22284000000000004,"accession":"MF373127","clade_membership":{"value":"B"},"country":{"value":"SE"},"date":{"value":2003.0},"Strain_name":{"value":"005SE"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C352T","A353C","G354A","A356C","G361T","T372C","A380C","G401A","G471A","C476T","C516A","A521C","C522T","A523C","G542A","C603A","G615A","A632G","G644A","A665G","A673G","A674C","A675C","C681G","A682C","G683A","A689T","C691A","A692C","G693A","C698A","C700A","A701C","G702A","G709A","A711G","G712T","C714A","G721A","C722T","A725C","A726C","A727C","T734G","G738A","T739A","A742T","G743T","A744C","G752A","C756G","A769T","G770A","A774C","T775C","C780A","A783T","G784T","C787A","T789G","A792T","A793G","T794G","A805T","T808A","T811A","G813A","G818T","A819T","A820T","G821C","G829A","G834A","G837C","T838C","A839C","T852A","C926A","T974C","G980A","G987C","T988C","T992G","A1025C","A1090G","T1091C","T1100C","A1101G","A1127G","C1169T","G1192A","C1229T","A1242G","C1243T","G1271T","A1274G","A1367G","A1400C","T1452A","C1460T","A1475G","T1484C","A1587C","A1601G","A1642G","A1686G","G1737A","C1768T","A1772G","G1784T","G1794A","A2241G","T2335G","A2413G","A2579T","A2618C","A2813C","A2818C","T2829A","A2842G","A2866C","C2909G","G2926A","G2947A","C2978T","A2981T","A3265G","A3280G","A3291G","A3292G","G3439A","G3483A","T3497A","G3529A","C3542T","A3592C","T3602A","A3619C","T3668C","A3919G","A3985G","A4081G","T4085C","A4112G","A4145G","G4174A","G4183A","A4293G","T4316C","G4376A","A4391T","A4397C","T4678G","T4679A","G4695A","G4696A","G4701A","C4726T","C4728A","G4764A","T4776A","G4778A","A4781G","A4888G","T4910C","A4951G","A5015C","A5046G","C5050A","T5072C","A5119G","G5140A","A5154C","A5159G","A5186G","T5188A","A5248T","T5260C","T5292C","G5363A","T5454C","A5461C","G5463T","A5545G","C5563G","A5566G","A5574G","T5576C","T5617G","T5618A","A5621T","C5651T","G5653A","T5686C","G5711A","T5739A","A5748C","A5790G","T5799C","-5800A","-5805A","-5806A","-5809G","-5810G","G5845A","G5856A","C5916A","G6020A","T6024G","A6030G","G6079A","C6097T","-6171G","T6178G","C6183A","C6190T","A6191G","A6194T","C6198A","G6201A","-6203G","-6204A","-6205G","A6209C","-6215A","A6222G","A6234G","T6245G","A6249C","A6251G","T6252C","C6253T","G6261A","A6266G","G6267A","A6273G","C6278A","G6280A","A6283T","T6287G","A6292T","T6294C","T6297A","T6299C","A6304T","T6306G","A6309G","C6318A","A6322T","G6323A","A6330T","T6351G","A6352T","A6360C","C6364T","A6367T","G6368A","A6374G","A6376C","C6377G","A6378G","G6379T","G6380C","A6389T","A6390C","G6391C","T6398C","G6403T","A6406T","T6414A","A6415T","C6416T","A6417G","C6428G","G6440C","G6442T","T6447G","A6448G","G6451T","T6452G","G6463C","G6466C","T6467G","A6470G","A6471C","A6476C","A6478G","T6485A","A6488G","A6490T","A6492T","G6498C","A6500C","T6504G","A6507C","A6512G","A6516T","A6520G","G6525T","A6532G","T6534C","T6536C","A6539C","A6543T","A6544G","T6551G","A6555G","A6560C","G6561C","A6571G","G6577A","G6581A","T6585C","G6588C","A6595C","A6597T","G6604T","T6641A","G6647A","T6655C","A6664G","A6669G","C6692A","A6693C","T6763C","A6773C","G6774A","A6803G","C6810T","A6834T","G6848A","C6935A","A6936G","G6948C","-6978A","-6979G","-6980A","-6981A","-6982A","-6984C","A6989C","A6990C","A7046C","G7101A","A7102C","A7111C","G7123A","G7137C","A7149T","A7155C","A7158G","G7160A","C7164A","T7165C","G7166A","C7174T","G7182C","A7202T","A7210G","A7215G","T7217G","A7221T","T7222G","A7229G","A7231T","A7239T","A7241G","A7246G","G7256A","C7264A","A7269C","C7272A","A7273T","A7275T","G7293T","G7295C","T7308A","G7310C","G7311T","A7313C","G7316C","A7322C","C7327G","C7354G","T7357G","G7361A","A7372G","C7429T","A7439C","C7463A","C7469A","G7508A","A7532C","A7540G","C7544T","G7549A","C7553T","T7575G","T7579C","C7645T","C7699T","G7709A","A7710T","G7726A","A7755C","A7796T","C7801T","A7818G","A7887G","T7888A","G7901A","C7906T","T7919G","C7934T","C7939A","C7950A","A7963C","A8006G","G8010A","T8013C","G8017C","G8030A","C8048G","T8097C","C8123A","A8142G","G8144A","G8161C","C8167T","G8170A","T8177A","C8209T","C8232T","C8236T","G8267A","C8320A","A8340G","A8364C","-8373G","-8374G","C8382T","A8390G","G8409A","A8425C","C8440T","C8460T","A8469G","G8588A","A8597T","C8607T","A8608T","T8646C","C8648T","T8666G","T8758A","A8762G","C8771T","T8786A","C8810T","G8814A","A8815C","C8840T","T8843C","G8848A","A8879G","C8903T","T8914A","T8918A","G8924A","G8933A","G8942A"],"INT":["I113V","T124A","K173R","F181L","V201I","T206S","I208L"],"RT-p51":["K49R","S162C","N175H","T240P","V245E","P272A","T296S","E399G"],"RT-p66":["K49R","S162C","N175H","T240P","V245E","P272A","T296S","E399G","R463K","S468T","H483Y","L503I"],"gp120":["S1N","T3S","T21N","V56I","V57G","E59G","-106C","N108K","N109D","N111Y","N113W","K123R","K127R","F131V","N132T","I133A","S136D","R138E","K140R","M141R","Q142K","K143N","Y145D","L147S","F148Y","Y149H","K150N","L151R","D152G","V154I","P155Q","D157N","N159I","I166M","N169T","V172I","T174A","Q175G","A176P","K179S","F182L"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I113V, T124A, K173R, F181L, V201I, T206S, I208L; RT-p51: K49R, S162C, N175H, T240P, V245E, P272A, T296S, E399G; RT-p66: K49R, S162C, N175H, T240P, V245E, P272A, T296S, E399G, R463K, S468T, H483Y, L503I; gp120: S1N, T3S, T21N, V56I, V57G, E59G, -106C, N108K, N109D, N111Y, N113W, K123R, K127R, F131V, N132T, I133A, S136D, R138E, K140R, M141R, Q142K, K143N, Y145D, L147S, F148Y, Y149H, K150N, L151R, D152G, V154I, P155Q, D157N, N159I, I166M, N169T, V172I, T174A, Q175G, A176P, K179S, F182L, E183D, I187N, H188C, P192A, A196P, L198R, K199N, C200G, K203N, K204N, F205V, N206A, T208P, C211S, K212D, N213I, S215T, T216P, V217G, Q218P, T220A, H221L, R224M, V227A, S228P, T229P, Q230L, L233V, N234S, S236P, V243I, I244T, R245T, E247D, N248I, S263T, E265K, N272S, H280T, R307Q, I317V, A319V, N327M, V332I, Q361R, S365T, -375E, -376K, -377S, N379P, M398L, R428T, N432M, N434T, N435S, D436N, T437N, E438K, T441I, G443A, N450Y, E454G, L455V, Y456L, K459D, K462I, I463V, V468I, K472T, A473D, K474M, R480I, E481Q; gp41: V2E, G3L, I4L, G5R, M7L, F8L, S17R, R46Q, L54M, Q56K, V69I, K77Q, L81F, L84F, L91R, E136I, E151A, T165S, K172R, N195R, G200R, F206V, H209-, L210-, P211-, A212-, P216H, E220D, S235D, R236Q, L237S, A243T, L249V, L265S, A268S, L274M, E280G, A281I, W286C, W292R, A310V, V322I, L340A, L345I; nef: -11G, A23T, D28A, A33V, H40Y, I43V, L85F, H89F, Y102H, D108E, V133I, F139Y, K150Q, E158T, S169N, F191Y, H192Q; p1: K4R; p17: S6F, V7I, S9I, E15D, I34L, L61M, Q63S, Q90K, V94I, K113S, K114Q, Q116A, A119-, A120-, G123E, S125R, S126N, Q127N, S129K, Q130V; p2: N9T; p24: V3K, Q4L, N5H, L6R, Q9E, Q13L, I15P, P17-, R18-, A22V, V24A, K25W, E29K, S33N, E35K, V36P, S41T, V86P, H87Q, E98D, N120S, I124V, R154K, T171V, E180D; p6: S3G, E20K, P30L, I31M, A39T; p7: T12P, K41Q; rev: K20R, P29L, G57Q, W58R, S61D, S67R, S86I, S92Y, S99N, E105Q, P107S, A108T, L110*; tat: K29H, R57G, Q63E, T64A, V67A, P77Q, P81T, K85T; vif: I31R, G37K, V39I, T47I, H48N, G60R, L64I, N101G, L109M, N122S, T151A, I154V, T155N, Q178R, 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N27S, K111T, T124S, T125A, I204V, S230N; RT-p51: S68G, I135R, S162A, Q207K, K211A, V245T, P294A, I329L, G335D, R356K, M357L, E370D, K390R, V435E; RT-p66: S68G, I135R, S162A, Q207K, K211A, V245T, P294A, I329L, G335D, R356K, M357L, E370D, K390R, V435E, D460N, R461K, V467I, S468H, H483Q, L491P, V536I, K558R; gp120: E4D, Q5D, L6K, K31R, A32S, V37K, V40I, V57K, -106H, N108-, N109-, T110-, N111-, T112-, N113-, S114-, G124I, E125N, I126G, M141I, K143R, L147I, L151D, I153L, N160T, T161N, T164I, S181T, I197L, D202N, K204T, T208S, K212N, R224K, E247A, T255I, V264I, S278G, I281M, G286K, A288T, T292I, G293R, D294K, A308E, K315E, A318V, K319G, E323K, -328N, Q361K, -373S, -374G, N379-, -381N, -382E, Q414L, S418N, L425M, N432E, E436G, T437I; gp41: M7L, A96N, E110D, D113N, K122R, D129N, L130T, T133P, I135L, E136Q, N140I, K144N, Q147K, N166K, V194I, P213Q, R214E, D230G, S235R, R236P, C253F, R259H, A268T, S293I, N298S, V301I, V318I, V322L, A325I, F326I, L330G, H331N, L345V; nef: -10G, -11G, G12R, P14E, 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S62A"}}},{"name":"DQ837381","node_attrs":{"div":0.20063000000000003,"accession":"DQ837381","clade_membership":{"value":"B"},"country":{"value":"KR"},"date":{"value":2005.0},"Strain_name":{"value":"05CSR3"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C151A","A213G","G214A","T288C","-305T","G369C","G455A","C467T","G480A","C503T","C516A","G518T","A533G","T570C","A576G","G579A","C603A","A604G","G614T","A645G","A649C","A661G","A676C","G677A","G703C","A706G","A810G","A812G","T824C","G911A","C947A","G989A","C1118T","A1145G","T1148C","G1173A","T1174C","G1205A","C1230A","G1232A","A1241G","A1265C","A1307G","T1409C","T1421C","T1457C","G1486A","G1499A","C1501T","T1502G","T1517C","G1562A","A1607G","A1664G","T1676C","A1736G","A1743G","A1745G","C1751T","T1771C","G1883A","A1908G","G1912A","A1920G","C1985A","C1986T","C1987G","C2075A","G2117A","A2164G","C2596T","G2624A","A2677G","A2693G","G2704A","A2707C","A2818G","T2854A","A2888G","A2920G","T2922C","A2938G","C2941A","G2972A","A2977C","G2984A","G3019A","T3052C","C3055T","C3067T","A3071G","G3085A","G3094A","A3096T","A3164G","C3223T","A3249G","C3252T","C3294T","C3303T","A3304G","G3307A","A3316G","T3328C","C3415T","G3427A","G3439A","T3449G","A3454G","G3467A","T3469C","T3497A","C3542T","G3562A","A3571G","G3651A","T3668C","A3684G","G3695A","G3755A","C3756A","A3760G","G3814A","G3825C","C3843T","C3857T","A3934G","T3976C","A3982G","A4025G","T4039C","G4051A","C4159T","T4198C","G4263C","G4267A","C4321T","C4475A","A4525G","T4537C","C4543A","A4564G","A4577T","T4676C","T4679C","C4726T","A4751G","A4782G","C4820T","G4856A","A4860G","G4870A","C4871T","T4886A","A4888C","C4889A","T4912G","T4952G","G4982T","T5062C","A5085G","G5087A","C5091T","G5137A","A5159T","T5188G","A5213C","G5225A","T5251C","G5267A","C5281T","A5282T","T5293G","A5345G","T5354A","G5412T","C5425A","A5431G","G5437C","T5492C","A5495G","A5545C","G5599A","C5614T","A5619G","A5631G","A5659T","G5668A","T5670A","T5677A","A5685T","C5688T","T5707A","T5708G","C5713G","G5717A","C5727A","A5742G","A5781T","A5784G","G5794A","C5795A","-5800G","-5804A","-5805G","-5806A","-5807G","-5809G","-5810G","A5828T","C5862A","A5866G","A5869G","A5914C","C5916A","C5924T","T5953C","G5954A","A5955G","C6004T","G6037A","C6052T","G6088A","C6139T","T6160G","G6167A","T6170A","A6174T","-6180A","A6186C","T6187C","A6194G","T6196C","-6203G","-6204G","-6205A","-6207T","A6208G","A6209G","-6212A","-6214A","-6215A","-6216T","G6217A","A6219C","G6220A","C6238A","C6243A","A6265G","G6267T","C6278A","A6281G","T6295A","A6304C","A6320C","T6334G","T6337C","C6375A","G6392A","C6412A","G6425A","A6462C","G6463A","T6511C","A6535G","C6545T","G6547A","C6563T","G6577C","T6599A","C6618A","T6641C","C6642T","G6647A","G6714A","A6728G","A6730G","G6743A","T6745C","T6760C","T6769C","A6775G","G6776A","A6780G","A6781C","A6786C","A6788G","C6800A","A6820T","A6836-","A6837-","T6838-","T6856A","A6858C","A6859C","T6883A","A6900C","T6916C","A6947G","C6951A","A6957G","A6962G","T6967C","-6971A","-6972A","A6974G","-6975A","-6977C","-6978T","-6979A","T6988C","A6992T","-6998A","-6999G","-7000T","-7001T","-7002C","-7004A","-7005T","-7006A","C7008A","-7009T","C7018T","A7040G","G7089A","A7102C","A7151G","A7152G","A7155G","T7165A","C7170T","G7182C","A7239G","G7310A","G7311C","A7313C","A7315G","T7321G","G7333T","G7405A","G7426A","T7432C","G7513A","A7522G","A7533G","G7549A","G7594A","G7604T","G7614A","T7618C","A7620G","T7622A","C7623A","T7624C","A7627G","G7628A","A7629G","G7631C","G7658C","A7669G","T7682G","A7683T","C7690T","T7691G","C7701G","C7702G","C7706A","G7712A","G7773A","T7775C","C7801T","T7864C","A7912T","G7942C","G8010A","T8013C","G8018C","A8023G","C8031A","C8047T","A8069C","G8070T","A8143G","G8144A","A8152G","A8163G","C8167T","G8170A","A8216G","T8227A","T8265C","T8279G","T8280G","A8288C","T8290C","C8293T","G8323A","T8366A","A8367-","G8368-","T8369-","G8372-","T8375-","A8390G","A8403G","G8404A","C8406A","A8435G","A8458G","C8460T","A8469C","G8506T","T8507G","A8564G","T8595G","C8640T","T8646C","G8654A","A8657G","T8675C","C8676T","T8685C","A8701T","T8703C","G8717A","A8718G","A8719G","A8739G","C8775T","C8790A","C8809T","G8817A","A8827C","T8829A","T8832C","T8835C","G8846A","G8861A","T8864G","A8909G","G8924A","G8933C","G8945A","G8955A","A9005-","G9006-","G9007-","G9008-","A9009-","G9010-","G9011-","C9012-","T9014A","C9017T","T9019C","G9022A"],"INT":["S17T","A23V","I84V","G163A","L234I","D256E","I268F"],"RT-p51":["V8I","D177N","T200A","E204D","N265D","V276A","V293I","E297K","I326V","Q334L","M357V","K385R","T386I","T400I","T403M"],"RT-p66":["V8I","D177N","T200A","E204D","N265D","V276A","V293I","E297K","I326V","Q334L","M357V","K385R","T386I","T400I","T403M","S452A","V458I","S468T","H483Y","S519N","K530R","A534T","A554N"],"gp120":["T3K","T21N","D34S","N102K","D105N","-106N","-107V","N109D","N111T","K123I","N128K","S130Y","I137M","R138I","Q142K","K143E","K150N","I156L","N159S","N160L","T164A","T174K","V180I","A191T","K203T","E241D","F249I","T255N","S263L","E265K","R287K","T292A","D297N","A3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S17T, A23V, I84V, G163A, L234I, D256E, I268F; RT-p51: V8I, D177N, T200A, E204D, N265D, V276A, V293I, E297K, I326V, Q334L, M357V, K385R, T386I, T400I, T403M; RT-p66: V8I, D177N, T200A, E204D, N265D, V276A, V293I, E297K, I326V, Q334L, M357V, K385R, T386I, T400I, T403M, S452A, V458I, S468T, H483Y, S519N, K530R, A534T, A554N; gp120: T3K, T21N, D34S, N102K, D105N, -106N, -107V, N109D, N111T, K123I, N128K, S130Y, I137M, R138I, Q142K, K143E, K150N, I156L, N159S, N160L, T164A, T174K, V180I, A191T, K203T, E241D, F249I, T255N, S263L, E265K, R287K, T292A, D297N, A308K, K309S, N311T, N312D, Q316K, K319D, R322S, Q335P, N349T, S365G, T366N, N368S, -373N, -374D, -375L, T380N, -381S, -382S, D384I, T385N, I396V, R412K, R416S, L425I, N432K, N433D, E436T, T437G, T439I, G443A, K462R; gp41: G3T, I4L, K77R, A96T, A101S, S104N, K106R, S107N, D109S, E110Q, E119Q, Y127V, D129S, L130V, T133R, E137K, S157N, R236Q, L237S, D239H, A243E, S256L, A281I, N287S, N305D, V321A, F326G, I329L; nef: S9-, R21E, K39R, H40Y, I43L, C55L, L85V, Y102H, Y115H, Y120F, F121L, N126G, A156V, G159R, N162T, C163S, M168I, M173I, D174E, E197D, D205N; p17: E12Q, R30K, G49S, L61I, Y79H, T81A, V82I, Q90R, K91R, E93D, I104V, E105A, N109S, K114T, G123A, N124S; p24: L6I, I27V, V148T; p6: T22A, I31T; p7: R7K, T12M; pro: D29N, N37S, K41R, L63M, L93I; rev: E10D, E32Q, R53Q, G57A, I59V, S61R, P67S, Q74P, S99D, I102V, P107S, A108T; tat: K12N, Q17K, K19E, A21P, K40R, R78P; vif: K33R, T47I, I66V, R92G, S95N, N101T, Q109R, N122K, R132S, I159T, T167A, R184K; vpr: T19S, N28R, V37P, G41S, A55T, I60L, I63M; vpu: P3S, V21I, S24T, L27F, L34R, Q36E, R37K, D40E, E58D, A63K, M67R, H74L"}}}]}]},{"name":"B_NODE_0000029","node_attrs":{"div":0.14411000000000002,"clade_membership":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["G265A","C516T","G599A","G1271T","G1313A","A3264G","G4695A","T5062C","T6835A","C6935A","-6971A","-6973T","A6989-","-7000A","-7001A","-7002A","T7433C","G7658C","T8103C","C8277T","A8364-","T8666C","A8739G"],"RT-p51":["K390R"],"RT-p66":["K390R"],"gp120":["I317V","-370S"],"gp41":["E119Q","V267A"],"nef":["R178K"],"rev":["P31S"],"vif":["G37K","I159T"]},"labels":{"aa":"RT-p51: K390R; RT-p66: K390R; gp120: I317V, -370S; gp41: E119Q, V267A; nef: R178K; rev: P31S; vif: G37K, 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S17N, A23V, L28I, I72V, I101L, I113V, E152K, F181L, G190E, V201I, T206S, Q216H; RT-p51: D76N, V111I, I135T, F214L, V245E, P272A, T286A, V293I, E297K, M357I, A360T, A376T, E399K, T400I, T409N, V435E; RT-p66: D76N, V111I, I135T, F214L, V245E, P272A, T286A, V293I, E297K, M357I, A360T, A376T, E399K, T400I, T409N, V435E, D460S, A554T; gp120: T3S, E19D, T21K, A32G, D34E, V37M, V56I, N64D, N71D, H77Q, K93Q, N102D, T104I, -106Y, -107K, N109T, T112N, -119N, -120T, -121T, K123D, G124T, E125G, S136N, M141K, V153L, D157N, N158E, D159V, P192-; gp41: I4L, M7V, V24I, V28A, L54M, K77R, S88T, S107T, L108M, D109K, E110G, K122R, D129G, L130E, T133R, I135L, N160S, N166Q, I193L, H209R, P213Q, S235T, R236Q, V238A, D239T, I270T, R277G, A306V, A310T, V321A, V322I, A325V, I329F, H331N; nef: R8E, S9-, R21Q, E24G, P25I, N52T, D54S, C55L, Y81F, K82Q, A83G, L85W, Y102H, D108E, F139Y, E149D, E158A, R188S, H192R, D205N; p1: S8P, H9Y; p17: E12Q, K28R, R30K, L61I, G62A, K91R, E93K, D102E, A115V, Q127H; p2: T12N, M14L; p24: S41T, I91V, E180D, P207Q, A208G, T216S, V230I; p6: T23-, P25S, P30Q, L38S, S50L; p7: K41R; pro: K14R, N37D, K41R, I64V, V77I; rev: S31T, R53H, G57N, W58R, P72S, L73I, Q95R, T114A; tat: A21P, N24A, K29Y, S70P, T74A, P77H; vif: K22N, K36Q, K37R, V39I, D61E, T67I, T74A, K91E, N101H, Q105K, H127R, R132S, T151A, I154R, T159R, T167A, P177S, G185E, S186N, H187Q, N190S; vpr: A4I, Y15N, N28S, V37A, G41S, R85L, Q86R; vpu: L4E, V14L, A15V, S24T, I33T, L42I, E66G, -69V, -70E, -71M, -72G, D80A"}}}]},{"name":"B_NODE_0000031","node_attrs":{"div":0.14575000000000002,"clade_membership":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["G3364A","G3651A","G5187A","T5487C","-6205T","A6208C","A6986-","T6988-","A6990-","C7153T","T8290C","T8426G","G8875A","T8966C"],"RT-p66":["S519N"],"gp120":["E122-","D384E"],"gp41":["D109N","R236P"],"nef":["M182V"],"p24":["N120S"],"vpu":["L27F"]},"labels":{"aa":"RT-p66: S519N; gp120: E122-, D384E; gp41: D109N, R236P; nef: M182V; p24: N120S; vpu: 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V79I"}}},{"name":"KT427771","node_attrs":{"div":0.20963,"accession":"KT427771","clade_membership":{"value":"B"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_RJ067"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C150T","A161C","A213T","G214A","A216G","A220G","C233T","A303T","A304-","A371C","T422C","T426C","C456T","T495C","A507C","G518A","C535G","A548G","G579A","A585G","C586T","A599G","A619G","A676G","G709A","C714A","A715C","G716A","G743A","C749T","A779G","T782A","A803G","T858C","G944A","G956T","G989A","A1002G","A1007G","A1025G","T1091C","A1142T","T1181C","C1211A","T1244C","C1245T","A1259G","T1280C","G1301A","G1394A","A1412G","A1415T","A1449G","A1450G","G1455C","A1458G","G1487A","A1543G","A1545C","C1658G","G1661A","T1676C","G1697A","A1701T","A1715G","A1736G","A1765G","A1781G","C1782T","G1794A","G1804A","C1826G","C1828T","A1839G","A1867G","A1918G","C1996A","A2002G","G2027A","C2044T","G2074A","T2080C","T2087C","A2119G","A2155G","T2199C","T2257C","T2269C","C2296T","C2356T","T2383C","C2386T","A2446G","T2449C","A2459G","T2476C","G2509A","A2524G","C2533T","A2579T","T2653C","G2681A","G2682A","C2684G","A2727G","A2743G","T2806C","A2839T","G2869A","A2881G","G3053A","A3097C","A3115G","T3165C","C3178T","A3224T","C3232T","G3264A","C3266T","A3280G","A3293T","C3294T","C3346T","A3400G","G3427A","G3431T","A3454G","T3497C","C3499T","T3505A","T3551C","G3562A","T3628C","A3631G","A3637G","A3676T","C3692T","C3712T","A3715G","G3737A","C3751T","C3773T","A3805G","A3824G","T3826C","A3839C","G3841A","A3868G","A3890T","C3892T","C3908G","A3961G","A4021G","G4051A","G4060A","A4063T","C4146A","G4150A","G4187A","A4243C","A4246G","G4268A","C4318T","A4319G","G4354A","G4464A","G4467A","T4537G","A4564G","T4585C","A4625G","G4631A","A4650C","A4652C","T4672A","A4677G","G4684A","T4691C","G4694A","A4711C","A4721T","A4725C","T4769A","G4778A","A4781G","A4819T","G4835T","A4858G","G4861A","C4890T","T4891C","T4912A","A4966G","T4967G","A4968G","G4975T","T4976A","A5021C","T5028C","C5034T","A5059G","A5061C","G5066A","G5093A","G5167A","G5179C","T5209C","A5213C","C5221T","T5224C","G5225A","A5233G","G5246A","A5248C","G5267A","A5278G","G5279A","A5336C","G5363A","A5432G","C5444A","C5445T","T5466C","G5482C","T5483G","T5492C","G5548T","T5576C","T5577A","T5578G","C5579A","A5607C","C5614T","C5620A","C5639G","A5640T","C5654G","G5668T","C5679T","A5680T","A5702G","A5703G","T5707A","T5708G","G5711A","G5717A","A5746G","G5747C","T5778C","-5800A","-5804A","-5805A","-5806A","-5807T","-5809G","-5810G","-5812C","-5817A","-5819T","C5827A","C5862A","A5863G","A5869T","A5896G","A5907G","A5911C","C5916A","A5947G","G6023C","C6052T","T6085G","C6115T","G6121A","A6131C","-6171G","-6172G","A6174G","-6175G","-6180A","A6182-","C6183-","T6184-","A6185-","A6186-","T6187-","-6203T","T6205G","A6206G","-6207A","-6211G","G6217-","G6218-","A6219-","G6220-","C6247T","G6280C","A6286T","A6371C","A6420T","A6456G","T6457A","T6460C","A6465G","G6466A","C6483T","T6487C","A6514G","A6532G","A6535G","A6574T","A6589G","T6637A","G6638A","A6640G","T6641G","A6649C","A6654C","A6659G","C6660T","A6684G","A6693C","G6712A","G6725A","T6745C","A6753G","C6758T","A6779G","A6781C","C6790G","A6797G","A6812G","-6830G","-6831G","-6832G","A6855C","T6888C","G6889A","A6935C","A6957G","-6968G","-6977A","-6978C","-6979T","-6980G","-6981A","-6983A","-6984A","-6985T","-6986A","-6988T","-6989A","-6990G","T6994A","A7000-","A7001-","A7002-","T7003-","C7008T","A7021C","A7027G","A7037G","A7057G","A7090T","A7095T","A7100C","T7106A","A7129G","T7147G","A7148T","A7149C","T7159A","C7164G","C7170T","G7232A","A7261G","A7300G","T7308G","A7322G","G7324A","G7450T","A7458G","T7462C","C7463A","G7513A","A7532G","A7533G","T7555G","A7627C","G7628A","A7666C","G7676A","G7688C","G7689A","C7690G","A7713T","A7714T","G7717A","G7720A","A7733C","A7744G","G7745A","A7750G","C7770A","A7771C","T7775C","T7783C","G7846A","T7867A","A7868T","T7888C","T7913C","C7931T","T7932C","A7953G","G7965A","A7977G","A7988C","T8008G","G8010C","G8050A","G8061T","C8065T","T8097C","T8112C","T8153C","G8158C","A8163G","C8218T","C8220T","G8255A","G8264C","G8274C","T8279G","C8286-","T8287-","A8288-","T8289-","C8290-","C8291-","T8292-","C8293-","C8294-","A8295-","C8296-","A8297-","T8298-","A8299-","C8300-","C8301-","T8302-","A8303-","A8305-","A8306-","G8307-","A8308-","A8309-","T8310-","A8311-","A8312-","A8316G","G8317A","G8319A","C8320A","T8322G","A8327-","G8328-","G8329-","G8330-","C8331-","T8332-","T8333-","T8334-","G8335-","C8336-","T8337-","A8338-","T8366A","-8371A","T8375-","G8377A","G8412C","A8420G","G8432A","C8440T","A8455C","C8460T","C8467T","A8469G","C8488A","C8495T","G8499C","G8506T","T8507G","G8517A","A8533G","C8552T","A8555G","A8580G","C8581A","T8595C","T8596G","A8597C","C8607T","A8608T","A8636T","A8655C","C8688A","C8720T","C8741A","G8753A","T8757C","A8797G","A8815G","C8828T","A8886C","T8887A","T8913C","C8957T","C8971T","C8992A","C9017A","T9019G","T9029A"],"INT":["S17G","M22L","S39C","L45V","E96D","T124N","E138K","K156N"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S17G, M22L, S39C, L45V, E96D, T124N, E138K, K156N, V165I, I182V, S230N, R231K, N254K, R284G, D286N; RT-p51: V35A, K122E, S162C, G196K, Q197E, K211R, E248D, D320N, M357T, T377L, R390K, T400L; RT-p66: V35A, K122E, S162C, G196K, Q197E, K211R, E248D, D320N, M357T, T377L, R390K, T400L, A446S, S468P, K527N, V548I; gp120: T3K, K5N, K18R, E19D, T21N, V57L, H77Q, K93Q, -106N, -107W, N109D, T112S, N113T, S115L, -116D, -117M, S136D, I137V, Q142H, E144D, I173L, Y189F, N201R, K204R, P210L, E240D, N261K, E262K, S263A, E265N, N267T, T269V, K277R, H280P, A291T, D294Q, Q300R, H302Y, K309D, N312K, K315E, V317I, K320E, -326G, N327K, -328N, N334T, M345T, N368Q, -372G, N379S, -381E, -382N, E384S, I395V, Q414L, R416Q, S418T, N432S, N433D, N434G, N435E, T437S, T439I, V460I; gp41: V2L, I4G, M7V, E49D, Q52R, L54M, K77G, I84M, E121D, D125N, D129Q, E137V, K144Q, E148K, A156D, F188L, T189S, L210S, D217G, G221E, E225G, S235R, C253F, L265S, I270T, Y284H, W285C, N287S, A306V, V318I, V321L, R324T, F326V, A328G, I329R, L330E, H331W, I332E; nef: -10K, -11E, G12-, R22Q, E24Q, A33V, E38A, H40Y, A42V, I43V, A49E, A53P, C55L, E59K, T80D, L85R, H89F, E98D, K105Q, H116N, F139L, K152R, E158G, V182Q, F191L; p1: H9Q; p17: E12D, S54P, R58Q, V82I, T84V, K95R, K114R, S125N, Q127T; p2: N9G, A11P, T12A; p24: E75D, I91V; p6: T8S, E29G, A39T, R42K, S50L; p7: K26R, N27H; pro: L10V, K14R, V77I; rev: E11D, F21Q, L22I, P28L, S31P, E47A, R53Q, S54A, A68T, L73F, I102A, V104L; tat: K19R, T23N, V36R, A58S, V67A, S68D, S75P, T82A, E86K; vif: K22H, M29K, I31V, H42P, E45D, I47L, D61E, D78V, Q83H, K91R, R92E, N101D, L102S, L109Q, H127R, I128V, S130I, T151A, K158R, T159P; vpr: E25D, V37P, G41S, E48N, A55T, A59T, Q77H; vpu: P3S, Q5K, A11G, A16G, V21F, I25L, K32R, L34R, R35K, R37K, R47A, V65M, -69H, -70E, -71M, -72G, H74N"}}}]},{"name":"B_NODE_0000033","node_attrs":{"div":0.14863,"clade_membership":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["G3814A","G4150A","G4174A","G5167A","C5356T","C5614T","A5622T","-5804A","-6175T","-6203A","-6214G","-6215A","A6335-","T6337-","-6995A","-6999G","G7628A","T7691A","C7939T","G8010C","G8170A","T8227C","G8267T","G8323A","A8367-","G8368-"],"gp120":["G124-","M141L"],"gp41":["L130I","I135L","R259H","V322L"],"rev":["A108T"],"tat":["P77L"],"vpr":["T84I"],"vpu":["P3S","Q5H"]},"labels":{"aa":"gp120: G124-, M141L; gp41: L130I, I135L, R259H, V322L; rev: A108T; tat: P77L; vpr: T84I; vpu: P3S, 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M22I, L45Q, I101L; RT-p51: V35M, T39A, R83K, K102Q, K103N, K104R, D123E, I135R, E169D, V292I, E344K, A355S, R356K, K366R, K388R, T403A; RT-p66: V35M, T39A, R83K, K102Q, K103N, K104R, D123E, I135R, E169D, V292I, E344K, A355S, R356K, K366R, K388R, T403A, S468T, S491P, L517I, Q524E, A554S; gp120: T3V, K5N, V57L, N64D, -107T, S115N, -116T, -117T, -118E, -119E, -120Q, -121L, -122T, -124E, E125Q, I126M, S136D, I137L, E144Q, F148L, D159G, N160T, T161-, V180I, K204N, P210Q, K212T, L237R, E240D, I244L, E247S, T250S, A253V, Q259H, S263T, V264I, E265Q, N272S, R287K, Y290F, Q300R, R307K, A308E, K309D, N311E, N312R, T313N, K315Q, Q316K, K319M, R322K, -328K, K329T, I331T, V332K, N334D, Q335K, S336H, S337A, S347T, Q361N, S365Y, W367-, N368F, -372A, -373W, -377S, -381N, -382S, N383T, T385K, P389Q, I395F, M406I, R412K, R416S, E436D, T439V, G443A, V468I; gp41: I4L, S23A, L54M, E110Q, D129G, T133N, E137K, K144Q, E148D, S157N, N166Q, L191F, I193L, P213Q, E220G, S251N, C253F, A268T, L273P, W286G, L288I, 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V65M"}}},{"name":"KF384808","node_attrs":{"div":0.21112999999999998,"accession":"KF384808","clade_membership":{"value":"B"},"country":{"value":"US"},"date":{"value":2011.0},"Strain_name":{"value":"ES22_27"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C8-","T24A","G53-","C151T","C152A","G167A","C227A","A286G","-305T","G365C","G379A","A428G","A458G","G471C","T495G","A499G","A512G","G520A","C536T","C540A","T549A","A562G","A571T","T636C","A692G","C746T","C747A","C749G","G770A","A803T","C902T","A932G","G944A","C950T","C1013G","G1067A","G1078A","A1079C","C1137T","G1173T","T1174C","C1175T","G1192A","C1220T","C1230A","A1265C","T1271G","G1301A","A1313G","C1354G","A1370C","A1382T","G1443A","A1450C","G1474A","C1490T","A1497G","A1498G","C1501A","T1517C","A1529G","A1567G","T1613C","T1679C","A1712G","C1768A","T1771C","A1781T","C1825T","A1867G","G1912A","A1920G","T1975C","A1982G","C1985A","G2027A","T2035C","T2080G","A2203C","A2243G","T2257C","G2273A","A2290G","A2314G","G2359T","A2368G","C2386A","A2413G","A2459G","C2464T","T2476C","A2519G","G2600C","A2612C","C2615G","G2656A","A2680T","A2699G","A2727G","T2735C","A2752G","T2770C","T2806C","A2839G","T2885C","A2937G","G2972A","G3004T","C3055T","G3088A","G3098A","A3115G","T3118A","A3136G","T3165G","G3168A","G3171A","G3173A","A3238G","T3310C","A3347C","C3376T","G3379A","G3398A","G3427A","T3445C","A3447G","A3481G","C3500A","T3541C","T3551C","A3586T","T3613A","A3629C","A3631G","G3667A","C3691T","C3712T","C3773T","G3796A","A3808G","C3908T","C3962T","T3967C","A3985G","A3989G","C3994T","C4015T","A4066G","C4078A","A4145G","C4159A","T4276G","G4279A","A4356G","G4376A","A4391T","A4407G","A4431G","T4444C","G4464A","A4531G","G4573A","A4577C","G4583C","A4658G","A4677G","T4679G","A4686G","A4687G","A4692C","A4695G","T4703A","C4726G","T4727G","C4728A","T4742C","T4769C","A4774G","A4845G","G4856A","A4858G","G4861A","G4887A","T4910C","T4914C","A4966G","A4988T","T5018C","C5062G","T5073C","G5137A","A5213G","C5214T","T5237C","A5238T","T5263A","A5278G","A5290G","G5363A","G5370T","A5397C","G5433A","A5462G","A5491T","C5513T","G5532A","A5566G","T5576A","T5577C","A5594G","G5599A","A5607C","C5654G","A5659C","C5688T","A5703G","G5717A","C5727A","G5741A","G5747T","A5760G","T5788C","-5800G","-5805G","-5807G","A5828T","G5853A","A5866G","A5867-","A5868-","A5869-","A5881G","A5896T","G5902A","A5907G","C5916A","C5924T","G5939A","G5962A","A5965G","C6004T","A6016G","G6023A","A6030G","T6100C","A6130G","A6158C","T6160G","C6163T","C6165A","T6169G","T6170G","-6171C","-6172A","-6180T","T6181C","A6188G","C6190A","T6193A","A6194C","C6198A","T6199C","A6200G","T6202C","A6203C","-6204C","-6207A","A6209T","-6211A","-6213A","-6216A","G6217T","G6218A","A6219T","G6220T","A6222G","A6223T","G6225C","A6230G","T6250C","C6255G","C6262A","T6271A","A6275G","A6281G","A6282G","G6284A","A6286C","A6302C","A6303T","C6305G","T6306A","G6311A","A6316G","A6320G","G6323A","-6335A","-6337C","G6339A","G6345T","G6346A","T6351G","G6368A","C6382T","C6412T","T6454C","A6456G","T6457A","A6461C","G6463C","A6465T","A6476T","C6482A","A6488G","A6490C","T6493G","T6523C","C6545T","A6565G","G6577A","A6594C","A6616G","G6626A","A6648T","A6664G","C6667A","A6668G","A6682G","A6686G","T6735A","T6772C","G6776A","A6779C","C6790A","A6797T","A6799T","A6801T","A6809C","A6822G","C6824A","A6835T","A6840G","C6850T","C6874T","T6895C","T6904C","G6905A","A6932T","-6968T","-6969G","-6970G","-6972A","-6975A","-6977A","-6978A","-6979C","-6980A","-6982T","-6983A","-6984T","-6985T","-6986T","A6987G","-6988G","A6992G","-6996C","-6998C","G6999A","-7009T","C7018T","C7094G","T7106G","T7114C","A7120T","G7123A","A7154G","A7155G","C7156G","A7158G","C7164G","T7228C","G7244A","A7322G","G7375A","C7397A","A7399G","T7403C","G7450T","T7516C","G7549A","C7574A","T7579C","G7604A","C7625T","A7629C","G7633T","C7645T","A7669T","C7678A","G7689A","A7693T","A7700T","A7713C","G7720A","A7722C","A7729G","A7734T","A7800G","G7807A","T7884C","T7913A","A7915G","G7918A","T7921C","T7932G","C7938G","T7939A","A7953T","A7963C","A7988C","G7989A","G7997A","T8008A","G8017A","C8051T","C8103T","A8163G","A8170C","C8189T","G8194A","C8215T","A8222G","A8228G","G8245A","A8258G","T8265G","T8280G","T8281C","C8291T","C8294A","T8321G","T8322C","G8330C","C8331T","G8349A","G8350A","-8364A","G8365A","-8367T","-8368T","G8372-","-8373T","-8374T","G8385A","C8386G","T8387A","G8402A","C8406A","G8426A","C8440T","T8477A","G8479A","A8489G","A8494C","A8525G","G8528A","G8537A","C8552T","T8595C","C8601A","G8624T","C8666G","G8682A","T8711C","A8754T","C8755G","G8774A","G8784T","T8786A","G8789C","A8801G","C8809T","A8812C","T8832C","G8846A","G8848A","A8875G","G8888A","A8893G","G8894A","A8912C","T8915C","G8922A","C8934A","T8935A","C8948T","C8960A","G8962A","C8964G","C8966-","C8967-","G8968-","A8969-","G8970-","C8971-","T8972-","T8973-","T8974-","C8975-","T8976-","A8977-","C8978-","A8979-","A8980-","G8981-","G8982-","G8983-","A8984-","C8985-","T8986-","T8987-","T8988-","C8989-","C8990-","G8991-","C8992-","T8993-","G8994-","G89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I72V, T124A, D167E, Y194C, V201I, T206S, K211R, K219R, S230N, I268L, D270H; RT-p51: E36D, I50V, V60I, W88C, K122E, I142V, E169Q, K173Q, Q174E, I202V, K211R, K281R, V293I, G335S, M357R, R358K, G359D, A360T, N418H, V435I; RT-p66: E36D, I50V, V60I, W88C, K122E, I142V, E169Q, K173Q, Q174E, I202V, K211R, K281R, V293I, G335S, M357R, R358K, G359D, A360T, N418H, V435I, K451R, L469I, K512Q; gp120: T3A, K5-, K18R, T21N, D29N, V57I, E59G, N102Q, T104N, D105E, -107K, N109I, T110S, N111A, T112-, N113-, S114-, S115-, K123-, I126V, T134S, S136G, D139E, L141V, K143G, E144N, K150L, L151D, V153I, I156V, D157P, S162N, R164I, I166R, V172I, N201R, K203H, K204M, T208S, P210T, K212D, N213K, E247A, V258I, E265V, N272G, S278G, D294K, A308T, K309Q, N312K, K315Y, Q316M, K319Q, E323G, Q324K, -328N, K329R, G351R, T360S, Q361K, -372W, -373N, -374N, -375N, -376S, -377I, N378W, T380A, -381T, -382Q, Q414E, S418A, N434G, N435S, T437S, E464K; gp41: M7V, V24I, Q32K, E49D, L91I, A101T, N109T, E110D, K122N, D125E, T133S, E137T, N140T, K144M, N166S, V194A, L204M, H210R, A212G, D217V, E220D, R229Q, D232N, S235R, R250W, A267V, A281V, N287S, T307A, I309V, I319V, V321G, F326C, L330F, H331N, L340A, A343L; nef: G3N, R8N, -10F, A15R, M20I, D28E, A33V, S45R, S46N, N51T, L87I, K94N, D108E, V114I, T138C, V148L, A156V, N157T, M168I, S169N, K178R, V182I, K184R, V194M, L198K, C206*; p17: R15K, V46L, S54A, E55G, G62E, Q69K, S72T, K76R, Y79F; p2: V7I, N9T; p24: L6M, G116D, V148S, R154K, A208G, E213D; p6: P30Q, I31T, E34D, P49L; p7: R3K, K11G, T12N, K34R; pro: K41R, I62V, L63T, V77I; rev: G6E, F21T, S30R, S31T, E47A, R50K, S54T, G57R, A68V, T108P, T114I, E116K; tat: R7S, K29R, T39L, S46F, T64A, V67D, S68Y, T75A, L77D, T82S, K85T; vif: R19K, I31V, K33R, K34G, K36Q, K37G, V39L, T47R, H48N, K63R, I87V, K91R, R92K, Y110H, H127R, E134D, T151A, K159R, R184K; vpr: Y45L, Q86R, A89S; vpu: A16G, R37K, D40E, R45K, R47I, M67R, 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L82Q"}}},{"name":"AY561238","node_attrs":{"div":0.20234000000000002,"accession":"AY561238","clade_membership":{"value":"B"},"country":{"value":"CO"},"date":{"value":2001.0},"Strain_name":{"value":"PCM034"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["A353G","A368T","A386G","A388G","A414G","A424G","C467T","A491G","T516C","G520A","T567A","A576T","C577T","A585T","C586G","A604G","A645G","G677A","G687A","C710T","A711G","C746T","C749T","G752A","A803G","G911A","A986G","T1003C","A1025G","A1073G","C1098G","A1208G","C1245T","G1328A","A1349G","A1400G","T1444C","A1475G","T1511C","C1541A","A1560C","C1615G","A1664G","T1679C","T1682C","A1691G","A1714C","G1726A","G1804A","A1852G","A1920G","C1986T","C1987T","C1996T","G2027A","T2071C","T2092C","G2230A","G2246A","A2260G","G2273A","A2293G","G2392A","G2428A","G2470A","G2518A","C2533T","A2545G","C2584T","C2714G","C2777T","T2779G","T2829A","G2878A","G2887A","C2908T","C2941T","T3045C","G3046A","T3059A","G3091A","A3154G","A3164G","G3166A","A3238G","G3264A","A3293T","A3316G","C3376T","C3394A","A3400G","A3406G","G3431T","G3442A","T3497C","C3504A","G3529A","C3542T","A3651G","T3668C","A3703C","A3787G","A3808G","C3823T","G3866A","A3964G","G3983A","A3985G","G4060A","A4076C","T4079C","T4085C","A4107G","A4112G","C4138T","C4149T","T4153G","G4176A","C4210T","A4333G","G4335A","A4338G","T4412C","C4475G","C4501T","T4534A","T4606C","G4636A","A4652C","G4673A","T4674C","G4684A","G4694C","G4696A","C4728A","C4771A","A4782G","A4817G","T4826C","G4835C","G4856A","A4860G","G4864A","A4888G","T4910C","T4952A","C4965T","T4969G","A4988T","A5090G","A5122G","G5123A","A5134G","A5155G","G5176A","T5197C","G5212T","A5230G","G5256A","G5267A","A5277G","A5282T","T5292C","A5335G","T5354C","A5375G","A5431C","G5437C","C5478T","C5495A","A5496C","A5574G","A5637G","C5654T","G5718A","A5720G","A5751G","G5775A","A5784G","A5787T","T5788-","T5789-","A5790-","T5791-","C5792-","A5793-","G5794-","C5795-","A5796-","T5798A","T5799G","-5800G","T5801A","-5805A","-5806C","G5808A","-5809C","-5810T","-5812G","-5813T","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820A","-5821G","-5822G","-5823G","A5828T","G5837A","G5838A","A5866C","T5887C","T5899G","C5916A","G5954A","A5955G","T5964A","C5980T","C5989T","C6052T","T6134C","-6171A","-6172G","-6180C","G6201A","-6204A","A6206G","-6207C","T6210C","-6211T","-6213T","A6219G","A6226C","A6248T","A6263C","T6276C","G6277A","C6278A","T6287A","A6304C","G6311A","T6315A","A6330T","T6334-","C6336-","A6338-","G6339-","A6388C","T6395A","T6418C","T6457C","G6458A","T6460C","A6464G","A6484G","A6489C","C6559T","A6574C","G6575A","G6577C","G6578C","T6613A","A6628G","A6640C","A6679G","A6810C","A6818G","C6824A","A6825T","T6849C","A6855C","A6859C","A6913G","A6935C","C6938T","A6956T","A6960G","A6965-","C6966-","T6967-","A6971G","-6972G","-6975C","-6977C","-6978A","-6979G","-6980T","-6981G","-6982G","A6992-","C6993-","T6994-","-6996A","-7004A","-7005G","-7006C","-7009A","A7010C","A7037T","A7040G","A7090C","T7105C","A7151G","A7152G","A7155C","A7158C","G7162T","A7163G","C7164A","G7281A","A7313C","A7322T","G7331A","G7441A","G7450T","C7489T","A7504G","G7517A","T7555A","T7561A","G7568A","C7590A","G7604A","G7660T","A7668G","G7670C","A7711G","G7726A","G7759A","T7789C","G7790A","A7791G","C7792T","A7820C","A7847G","G7862A","T7879C","T7913A","T7921G","T7932G","T7968C","A7988C","C8005A","G8018A","A8019C","C8026A","C8031A","T8035C","G8050A","C8065T","C8071T","A8076G","G8079A","G8126A","A8128G","C8129A","G8130C","G8144C","G8204A","T8206C","C8213T","C8227A","G8243A","G8244A","G8253A","G8254A","G8264A","A8269G","T8279G","A8288T","G8317A","A8323C","G8330A","C8331G","G8345A","G8354A","T8366-","T8369-","-8370T","-8371T","-8373A","-8374G","G8376A","G8392A","G8402A","G8409A","G8426T","G8427A","G8428A","G8432A","A8441T","A8457G","A8461G","A8469T","C8471A","G8476C","G8490C","C8491A","C8495T","T8501A","A8503C","C8514G","G8534A","G8537A","G8540A","G8554C","A8555G","T8595G","C8640A","A8642G","A8643G","T8645A","A8647G","C8648G","C8651T","A8657G","G8659A","T8675C","G8682A","G8784C","G8789T","G8795C","A8796C","T8813C","T8829A","G8846A","A8847T","G8856A","G8861A","G8880A","T8881C","G8882A","T8914G","C8921T","C8928A","G8929A","A8932T","C8948T","C8967T","G8970A","G8981A","C8992T","G8994A","G8995A","G9010A","C9012T","T9029C","G9032A","G9040A","T9074C","G9085A","G9116A"],"INT":["V31I","G70R","I101L","K111R","I113V","T125V","G134E","R187K","K188R","L234V","D253E"],"RT-p51":["G51R","V60I","Q207E","V245E","V317A","S322T","T357A","R390K","T400S"],"RT-p66":["G51R","V60I","Q207E","V245E","V317A","S322T","T357A","R390K","T400S","A446S","S468P","T470N","H483Y","N519S"],"gp120":["E4D","T21N","D34S","V37K","-106Y","-107H","K123-","N132Y","I137L","L141T","Q142K","Y145N","K150N","V153I","V154E","D159I","T161-","S162-","S181T","D202N","K204E","K212T","E240D","E241N","V242L","E262D","D294S","V317I","K319T","R322G","Q324I","V332A","N334T","N368W","-372L","-373P","-374E","-375N","-376V","N378-","N379-","T380-","N383-","E384-","T385-"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R106K, V114I, V148L, E149D, E151D, K152Q, C163S, M168I, S169C, G172R, M173I, V180T, F191C, R196K, E197V; p17: K18R, K27E, G62E, L78I, T81L, T84C, Q90R, I104V, A118T, N124K, S126G; p2: V7A; p24: I91T, P123A, E180D; p6: E12A, R16K, R42K; p7: T50S; pro: K41R, V77I; rev: K20R, E47A, R53K, G57D, L60I, S61R, Y63H, A68T, L73F, G93E, T94D, S99T; tat: K19Q, A21P, T39I, T40N, S75A, S87P; vif: V7A, R17K, K22N, M29I, Y30H, K36N, H48N, A62D, I66V, Q83H, R92G, R93K, N101G, N122K, H127Y, I128R, E134D, T151A, K179R, H183R, N190S; vpr: D7N, R36S, V37T, G51E, A55T, E58G, I60L, I63T, Q77R, I84Q, R85I; vpu: A16V, K38R, E60D, L61Q, S62E, A63E, V65L, E66-, M67-, G68-, -69V, -70E, -71I, -72G, H74L, 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E13D, A23T, S57N, I60V, L74I, V110K, T112I, S119P, T122I, S195T, V201I, S283G; RT-p51: V21I, V35M, T39A, E40D, R83K, I135R, S162C, D177E, I178M, Q207E, R211A, S251H, V292I, E297K, V317A, I329L, G333E, Q334H, M357I, V365I, K390R; RT-p66: V21I, V35M, T39A, E40D, R83K, I135R, S162C, D177E, I178M, Q207E, R211A, S251H, V292I, E297K, V317A, I329L, G333E, Q334H, M357I, V365I, K390R, D460N, S468T, L469I, L491S, V496I, L517I, A554S; gp120: K18R, D34K, T35P, V37I, P57H, K69D, V106Y, -107P, -109D, T112S, N113T, S115N, -116S, G117S, -118N, -120I, -121L, G124E, T134S, T135G, Q142K, K143T, L147A, V153L, N160S, T161S, L165I, K204E, E240K, V243I, E247K, T250S, N251D, A253S, T255I, Q259H, V264I, Q265T, N272G, G293D, T294I, A308T, K309E, N312K, K315Q, Q316K, A318V, S319D, R322G, E323K, Q324K, F325L, -326I, -328K, T330K, V332I, M345K, G351E, N358D, T360S, Q361K, -368I, -372G, -373N, -377T, N379D, -383S, K393R, I396V, M398R, R412S, Q414Y, L424I, N433D, N434E, E436T, I463L, V468I; gp41: I4L, R46Q, K106R, L108Y, D109N, E110D, E119Q, K122R, Q147K, V190A, V194M, F206L, P213A, E220A, R229Q, R236Q, I245F, L249I, S256L, V267A, A268T, I270S, R276H, S293I, N298K, A306T, A310V, V318I, V322A, H331N, R334V, A343L; nef: G3S, W5L, S9R, -10T, -11P, P14S, A15V, V16I, D28A, S45T, L85V, D108E, Q125H, K152E, N162I, C163S, R178K, E182Q, L198K, Y202F; p17: V7I, S9T, R30Q, V82I, I92L; p2: V7A, N9A, T12S; p24: V27I, I91V, T110N, T148I; p6: S3N, T8S, T22A, T23P, S25P, P30Q, L35T, Y36H, L38M, A39T, R42K; p7: K41R; pro: L19I, K20R, M36L, N37D, L63P; rev: S8G, K14N, I21T, T31S, E47A, R53H, H63L, S67H, A68T, Q74P, S86N, D88E, I102V, E111D, *117E; tat: K19R, N24K, K40Q, Q54R, D61H, S62C, H65N, V67D, S68P, S70P, P77Q, K85Q; vif: K22N, K33R, A35T, K36S, R50K, H73Q, D78E, Q83H, V85A, K91R, V98I, V129G, S130T, P131S, A151T, T155K, K160R, A167K, Q178R, R184K; vpr: D7N, N28Q, A37S, Q77R, I84T, R85P; vpu: Q5V, L7A, V14L, S24T, I46L, R47I, E60D, L61Q, S62E, V65A, -69Y, H73-, 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E11D, A91T, S195T, S230N; RT-p51: K20R, K82R, K102Q, K122E, S162A, K173R, Q207R, R211S, E248D, P272S, K277R, A288S, Q334H, M357I, A376S, K385R, T386I, E399D, V435E; RT-p66: K20R, K82R, K102Q, K122E, S162A, K173R, Q207R, R211S, E248D, P272S, K277R, A288S, Q334H, M357I, A376S, K385R, T386I, E399D, V435E, E449D, R461K, L469I, H483L, S519N; gp120: S1N, E4D, K18R, T21N, V57K, M67A, K93R, V106L, -107N, N108A, -109T, T110-, N111-, T112-, N113-, S114-, -116I, -118S, -119N, -120M, -121T, E122L, S130T, I137K, R138N, M141K, Q142T, K143T, Y145R, L147Y, Y149N, K150R, I156M, N158D, D159N, N160S, Q175H, T208K, P210L, T250S, N261K, N267I, T269V, K277Q, S278G, I281M, A288T, E294G, H302Y, K309E, N311T, K315G, S319G, Q324R, N327-, V332I, Q335H, M345T, T360S, -370S, -372I, N378-, -381S, -382E, -383N, T387I, M398L, K404R, Q414N, R416S, S418T, L424V, S433G, E436D, S453N; gp41: K77R, T101I, L108Y, E110Q, E119Q, L130I, T133S, N140I, E143D, Q147K, E148D, N160T, I193L, P213Q, G235R, P236E, V238A, D239S, A243T, I245S, A281I, K297R, L304F, V318I, V321A, V322I, F326V, L340T; nef: -10L, H40Y, T48-, A49-, A53P, A56T, E62Q, I101V, Y102H, V114I, V133I, Y135F, E151D, H166S, D174E, E177D, R178K, K184R, Y203F; p17: V7I, E12Q, K28Q, R30K, K95R, A118T; p24: A14P, V27I, H87A, I91P, N120H, E128D, L136M; p6: T21M, T23I, S25P, L35-, A39T; p7: R3K, N8T, T12I; pro: L19I, E35D, N37D, L63C; rev: T15A, F21L, L22I, S25T, S54R, G57Q, S61D, H63Q, S86D, E87K, V97L, S99N; tat: R7K, K19R, T24A, V36K, A58T, D61S, K63E, V67A, S68H, K71D, P77H; vif: T20A, I31N, A35T, K36Q, G37R, E45D, T47P, R50K, Q105R, I120V, N122K, R132I, N140S, K141Q, I159K, K179R; vpr: T19A, V37I, R85Q, Q86R; vpu: P3S, L12I, V21I, K38R, D44E, E58D, E60D, L61H, S62E, A63E, V65A, E66T, M67L, G68-, -69V, H74D"}}},{"name":"KT124812","node_attrs":{"div":0.19226000000000001,"accession":"KT124812","clade_membership":{"value":"B"},"country":{"value":"DE"},"date":{"value":2004.0},"Strain_name":{"value":"963987"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["A374G","A423C","A424G","A440C","T486A","C516A","C531T","T571A","G608A","C641A","G644A","G709A","C746T","C830T","T861G","T884C","C902T","G944T","C1040T","A1074G","A1079T","A1090G","C1137T","G1160A","C1229T","G1271T","A1307G","A1359T","C1362T","T1444C","A1449C","T1452A","G1455-","C1456-","T1457-","C1460A","A1461G","T1484C","A1500G","A1567G","G1568A","T1613C","G1687A","C1692A","A1715G","G1739A","A1743G","A1772G","G1773A","A1776G","G1784A","G1804A","A1835G","A1852G","T1895A","C2070T","A2161G","C2386A","T2449A","T2542C","A2616G","A2617G","T2631A","G2656A","G2682A","G2710A","A2726G","A2752G","T2905C","A2968G","G2969A","A2985C","C3023T","A3027G","T3049C","A3080C","A3164T","T3165C","C3175T","C3322T","T3331C","T3412C","G3439A","A3463G","T3497C","A3503C","C3542T","T3567C","A3576G","C3577T","C3649T","C3692T","A3703C","A3706G","A3715G","A3733T","G3770A","G3866A","A3913G","T3924C","C3962T","A3964G","A3989G","A4069C","A4145G","T4153C","G4177A","G4267A","T4276C","C4321T","G4353A","A4372G","A4384G","A4397C","G4459A","G4495A","G4637A","C4665T","A4683G","A4693G","T4701G","G4708A","C4728A","A4733T","T4827C","A4857G","T4910C","T4959G","C4965A","C5019T","A5046C","T5047G","G5099A","A5119G","A5186C","A5213G","A5290G","C5294T","A5345G","A5360-","C5361-","A5362-","C5398A","G5412C","T5430C","C5444A","T5448C","A5493G","T5515C","C5567A","T5584C","A5612C","C5620T","A5622T","A5625G","G5629T","A5632G","T5677A","T5731A","G5747T","A5787G","A5804G","-5812C","-5813A","-5814C","-5815G","-5816A","-5817G","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","T5826C","G5864A","A5869T","T5929C","A5965G","G6079A","G6088T","G6167A","-6170G","-6172T","-6175G","A6177C","-6180G","C6183A","A6185G","A6186G","A6188C","C6189T","G6195A","-6203T","-6205G","-6206G","-6207G","-6210G","-6215A","G6220A","-6221G","-6222A","-6223A","A6226G","A6235G","C6247T","T6252C","G6261A","A6263G","T6271C","A6273G","G6284C","T6295A","C6318A","A6319G","T6331C","T6334C","A6335G","A6338G","G6339A","T6340A","T6351C","G6392A","G6403A","G6425A","C6446A","G6451A","A6490T","A6529G","C6545T","C6563T","G6578A","C6601A","C6647G","T6655C","A6682C","A6693C","-6703A","A6713G","T6724C","A6767C","A6781G","A6785G","T6787G","C6790A","G6806A","T6807G","A6811T","T6863A","A6877C","T6916C","C6919T","A6937C","-6956T","-6957C","T6961A","G6963A","A6965G","C6966A","-6977A","-6978A","-6979T","-6981T","T6988C","-6997T","C7008T","-7009T","C7012A","A7108C","C7124T","A7161G","A7163T","C7170T","T7217C","A7297G","T7321G","T7403C","C7463A","C7474T","A7570G","A7573G","A7604G","C7625A","T7630A","G7633C","G7640A","C7690G","T7691G","C7701G","C7702A","A7706C","A7711G","G7712A","G7720A","C7770A","A7771C","A7782G","G7790A","A7791G","G7807A","A7818G","C7869G","G7883A","G7885A","C7906T","T7913A","T7921G","T7932A","C7938G","C7940A","A7963C","G7987C","G7991A","C7999T","A8000G","A8010C","T8145C","T8218C","G8242A","G8255T","G8264A","G8267T","C8277T","C8286G","C8293T","G8304C","G8342A","G8350C","-8370G","G8388A","A8408G","G8409A","G8412A","A8413G","C8415G","G8429A","C8440T","A8458G","A8469G","T8483C","A8494C","C8495T","T8501C","C8514G","A8530G","G8534T","T8568C","T8594G","C8640A","A8642G","A8739G","T8747C","T8759C","G8795A","G8799A","A8812C","G8814A","G8818C","A8827C","C8828A","T8843C","G8858A","G8870A","A8874G","G8886C","T8887A","C8903T","G8905A","A8917G","G8955A"],"INT":["V31I","M50T","I72V","T124A","G193E","I203M","I208L","D288N"],"RT-p51":["Q174R","V179D","G196E","R211G","V292I","E297A","K311R","I329L","M357S"],"RT-p66":["Q174R","V179D","G196E","R211G","V292I","E297A","K311R","I329L","M357S","S468P","T470P","H483Y","L491S","N494S","E546D","V559I"],"gp120":["E4K","E78D","D105N","-107K","N108T","-116W","-118R","-119M","K123E","I133T","S136D","I137V","R138K","K140R","E144Q","P155Q","N158S","D159S","N160T","T161N","S162N","I166T","V180I","A191T","L198I","K212T","V242I","Q265E","R276S","H280P","R287G","E294S","I305L","N311E","N312K","K315E","V318S","S337T","A361N","-368S","-370D","-372N","-373V","-374T","-375N","-376K","-377T","N378D","T380-","T385I","E436G","T437S","T439I"],"gp41":["V24M","L54M","T101A","L108M","E110D","D113N","L130V","T133R","I135L","E137K","A156D","N160S","D163S","K172R","T189S","V194I","L204I","F206L","L210H","A212G","P213T","E220D","E228D","D230N","R233G","G235S","V318F","V321I","V322L","T325I","F326C","A328G","R334T"],"nef":["G3A","-10V","V16I","A23T","E24R","P25A","A33V","K39R","I43V","N51T","L58V","E63K","E64G","L100M","V153I","N157T","E158K","G159A","N162T","R178G","V182Q","R188H","H192R","D205N"],"p17":["L51I","L61M","P66S","F79Y","D102E","S125N"],"p2":["V7A","N9H","S10T","A11-","I13V"],"p24":["A14S","S44A","E71D","I115V","N120S","E180D","T210S"],"p6":["S3N","P5T","T22A","D32N","K33E","R42K"],"p7":["T12A","R26K","K34R"],"pro":["I13V","L33I","L63P","T91I"],"rev":["L18I","S30R","T31N","E47Q","R48K","Q51W","S86N"],"tat":["L8I","K12N","T23N","Y47H","T64N","S70P","S75T","P77E","K85T"],"vif":["H27Y","K33G","K36R","F39V","R41K","H48N","K91E","L125V","H127N","I154R","Q178R"],"vpr":["N28H","Q86-"],"vpu":["Q2P","Q5Y","I6M","A8S","I9V","S24T","L42I","R47I","E66G","-69H"]},"labels":{"aa":"INT: V31I, M50T, I72V, T124A, G193E, I203M, I208L, D288N; RT-p51: Q174R, V179D, G196E, R211G, V292I, E297A, K311R, I329L, M357S; RT-p66: Q174R, V179D, G196E, R211G, V292I, E297A, K311R, I329L, M357S, S468P, T470P, H483Y, L491S, N494S, E546D, V559I; gp120: E4K, E78D, D105N, -107K, N108T, -116W, -118R, -119M, K123E, I133T, S136D, I137V, R138K, K140R, E144Q, P155Q, N158S, D159S, N160T, T161N, S162N, I166T, V180I, A191T, L198I, K212T, V242I, Q265E, R276S, H280P, R287G, E294S, I305L, N311E, N312K, K315E, V318S, S337T, A361N, -368S, -370D, -372N, -373V, -374T, -375N, -376K, -377T, N378D, T380-, T385I, E436G, T437S, T439I; gp41: V24M, L54M, T101A, L108M, E110D, D113N, L130V, T133R, I135L, E137K, A156D, N160S, D163S, K172R, T189S, V194I, L204I, F206L, L210H, A212G, P213T, E220D, E228D, D230N, R233G, G235S, V318F, V321I, V322L, T325I, F326C, A328G, R334T; nef: G3A, -10V, V16I, A23T, E24R, P25A, A33V, K39R, I43V, N51T, L58V, E63K, E64G, L100M, V153I, N157T, E158K, G159A, N162T, R178G, V182Q, R188H, H192R, D205N; p17: L51I, L61M, P66S, F79Y, D102E, S125N; p2: V7A, N9H, S10T, A11-, I13V; p24: A14S, S44A, E71D, I115V, N120S, E180D, T210S; p6: S3N, P5T, T22A, D32N, K33E, R42K; p7: T12A, R26K, K34R; pro: I13V, L33I, L63P, T91I; rev: L18I, S30R, T31N, E47Q, R48K, Q51W, S86N; tat: L8I, K12N, T23N, Y47H, T64N, S70P, S75T, P77E, K85T; vif: H27Y, K33G, K36R, F39V, R41K, H48N, K91E, L125V, H127N, I154R, Q178R; vpr: N28H, Q86-; vpu: Q2P, Q5Y, I6M, A8S, I9V, S24T, L42I, R47I, E66G, 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L45Q, P90S, I101L, K219N, N222K, S230N; RT-p51: E29K, E36K, S48T, D121H, K122E, E123D, Q174E, Y188H, T215Y, Q334H, G335D, R356K, M357V, T377L, T400A, E404D, V435A; RT-p66: E29K, E36K, S48T, D121H, K122E, E123D, Q174E, Y188H, T215Y, Q334H, G335D, R356K, M357V, T377L, T400A, E404D, V435A, D460N, R461K, V467I, E516D, V548I; gp120: K5N, T21N, T35K, E59K, -107T, N108S, S115N, G117S, -118S, -119E, -120I, -121E, E122M, I137L, H145Q, L151Y, V154I, D159N, N160G, I166L, V180I, D202N, K204T, P210L, K212T, I244L, K254D, T255I, N267D, T269I, H280N, I281M, K315V, K319E, E323L, -326P, V332A, Q335H, S347I, -368T, N369G, -381T, D384G, T385Y, N433S, E436T, T437N, T439V, G443I, D446N, K472T; gp41: A96T, L108V, E110Y, D113N, E119Q, D125E, D129G, E137D, Q147L, E151Q, S157N, N166Q, A212T, G235R, R236P, V238A, N239H, F241L, A243T, V267A, V281L, W285C, N287S, A310V, V321M, A325I, L330I, R334T; nef: -10V, -11V, P14S, V16I, A33V, A49P, W57M, L87I, D108E, V114I, Y120F, T133V, E151D, N157T, S163C, M168L, S169N, E201D; p1: H9S; p17: E12A, R58K, L61I, G62R, V82I, V94I, S111C; p2: V7I, T8A, N9T, A11P, T12A; p24: L6M, E28K, V36I, E79D, L83V, A208G; p6: T8S, I31P; p7: R7K, T12V, N27H; pro: I64V, E65D, V77I; rev: F21R, S30N, R53Q, E57T, L60I, S61D, S99T, V104L; tat: T23N, T24Q, K29R, I39T, T40K, V67A; vif: K33G, K36R, G37K, I51T, K63E, I66V, H73N, R92N, S95R, N101D, N122Q, I124L, H127R, R132S, Q136H, N140S, T155K; vpr: I37M; vpu: Q2Y, D40N, R41K, R47I, E58D, M67R"}}},{"name":"JF320263","node_attrs":{"div":0.19997,"accession":"JF320263","clade_membership":{"value":"B"},"country":{"value":"US"},"date":{"value":2006.0},"Strain_name":{"value":"502_0839_wg01"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["A374G","G407A","A418G","T422C","A425G","C456T","T473C","A533G","A571T","C590A","A607G","G641T","G667T","A676G","C679T","G712A","C714A","A715G","G716C","C749A","A774C","C827T","C893T","C902T","A1089C","A1142G","T1143C","G1160A","G1271A","C1316T","C1459A","G1499A","G1567A","G1604A","A1642G","G1643A","C1656A","A1664G","T1730C","A1736G","A1819G","A1903C","G1920A","C1996T","T2080G","T2087C","A2182G","A2212G","G2224A","A2272T","C2281T","G2341A","C2386T","A2410G","A2416G","C2420T","T2440C","T2449A","C2464A","C2488T","A2557G","C2575T","A2579T","T2581C","C2584T","G2602A","C2626A","G2725A","G2727A","G2728A","T2788G","G2821A","G2833A","A2839C","C2857T","G2887A","T2905A","A2925G","A2932G","T2935C","A2951G","A2959G","C3013T","A3019G","G3046A","A3070G","A3080T","G3093A","T3132A","A3196G","A3226G","C3232T","T3253C","G3293A","C3319T","G3334A","G3364A","T3368C","G3383A","G3398A","A3403G","T3450C","G3490A","A3502G","G3529A","G3562A","T3628C","C3649T","A3655G","G3664A","G3694A","C3712T","T3730C","A3787C","A3805G","T3826C","A3952G","T4006C","G4057A","A4102G","C4110T","A4145G","T4147A","A4178G","G4183A","A4228G","A4273G","A4391T","T4498C","A4525T","C4576A","T4656C","A4661G","T4678G","G4684A","T4703C","C4761T","C4771A","A4774G","T4805C","T4826C","T4827C","A4874C","G4887A","T4925C","A4949G","T4969G","C5034T","A5045G","T5062G","G5075A","T5084C","G5085A","A5090G","G5093A","T5102C","A5159G","T5206C","T5239C","G5267A","A5278G","T5293A","G5363A","G5396A","T5471A","T5487C","A5496G","A5556G","C5563G","T5576G","T5577A","T5578G","C5579A","A5594G","C5602T","C5611A","C5620T","A5622C","G5629T","A5659C","T5677A","T5686C","G5711A","A5720G","G5730A","T5739G","A5742G","A5784G","A5787T","T5788-","T5789-","A5790-","T5791-","C5792-","A5793-","G5794-","C5795-","A5796-","T5798A","T5799G","T5801A","-5805A","-5806T","-5807T","G5808A","-5809C","-5810T","-5817G","C5827G","G5839A","A5869G","C5878A","T5887C","C5917A","A5983G","C5998T","G6020A","T6024A","A6025C","A6030T","C6052T","A6053G","C6097T","C6110G","A6124C","T6134C","T6151C","A6159C","G6167A","T6169C","-6172G","-6180A","A6185C","T6187G","A6188T","-6203G","-6205G","A6208-","A6209-","G6211-","A6212G","A6214C","-6215A","C6241T","A6251G","A6260G","G6261T","C6262G","T6264G","G6274A","G6275A","G6277A","C6278A","A6303G","A6304C","T6325C","A6326G","A6327G","T6328C","T6334C","C6336A","G6345T","G6346A","G6349A","T6351G","C6364A","G6368A","T6369C","A6420T","G6442A","T6445C","C6457A","A6488G","T6493C","A6595G","T6599A","C6601T","G6604A","T6637A","A6693C","-6703A","A6730G","C6758T","T6763C","A6765C","T6772A","G6773A","G6774A","G6776A","C6800G","C6807T","-6836A","-6837A","-6838T","A6936C","-6956T","-6957T","T6958A","A6962G","-6968T","-6969T","-6970G","-6971A","-6972A","-6973T","-6975A","-6977G","-6978A","-6979T","C6984-","A6985-","A6986-","A6987-","T6988-","A6989-","A6990-","C6991-","-6995G","-6996A","G6999A","C7020A","A7037T","G7055A","C7087T","G7101A","A7102C","C7134T","A7135G","A7149T","A7154C","T7156G","A7158G","C7164G","A7249T","C7267T","G7270A","G7307-","T7308-","G7309-","G7311C","A7322C","T7325G","A7420G","G7426A","C7463A","A7532C","G7549A","G7552A","C7605G","A7620G","T7622A","C7623G","G7627A","G7633T","G7640C","T7642G","G7688A","C7690T","T7691G","C7702A","G7712C","G7717A","A7741G","T7762C","T7774C","A7782G","G7790A","A7791G","A7820T","T7836G","C7939T","C7960A","A7974G","A7977G","A8006G","A8014G","T8020C","T8043A","G8050A","G8079A","A8119G","G8141A","A8142C","T8145C","G8170A","G8173A","A8180G","A8188G","G8194A","C8227A","G8242A","G8255A","T8279G","A8288G","C8291T","C8293A","A8297G","C8304G","T8323C","A8326G","G8342A","G8354A","T8366A","A8367G","-8370T","T8374G","T8375G","T8426G","C8445A","A8447G","C8450T","G8453A","C8460T","A8475-","G8476-","T8477-","-8487G","G8490T","A8494C","T8507C","A8516G","A8525G","G8531A","G8537A","T8543C","G8554A","C8565T","G8588A","C8590G","G8654A","A8693G","T8740C","A8746T","T8759C","G8798A","A8815C","G8822A","C8840T","A8851T","G8858A","C8868T","A8874G","C8904A","T8918C","G8922A","T8923G","G8945A","C8960A","T8966C","C8967A","A9005G","T9012C","T9014C"],"INT":["T112I","T124A","I135V","T206S"],"RT-p51":["S162C","D177E","R211K","E248D","K277R","T286A","I329L","G333E","F346Y","T377M","E430K","V435I"],"RT-p66":["S162C","D177E","R211K","E248D","K277R","T286A","I329L","G333E","F346Y","T377M","E430K","V435I","L452S"],"gp120":["T21K","V56I","V57D","E59V","M67V","Q86E","N102T","D105N","-107N","-109D","N111Q","T112S","-118V","-119K","I133V","S136V","I137R","V141I","Q142K","K150S","N158G","T161N","R164I","I166R","V172T","Y189F","N201K","K212A","F249I","H280P","E294N","H302Y","N304T","S306R","G307K","E308K","Q316E","A318V","-328N","Q361P","-368N","N369Y","-374T","-375D","-376P","-377L","N379D","-381L","S383N","P389Q","I395F","E401K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T112I, T124A, I135V, T206S; RT-p51: S162C, D177E, R211K, E248D, K277R, T286A, I329L, G333E, F346Y, T377M, E430K, V435I; RT-p66: S162C, D177E, R211K, E248D, K277R, T286A, I329L, G333E, F346Y, T377M, E430K, V435I, L452S; gp120: T21K, V56I, V57D, E59V, M67V, Q86E, N102T, D105N, -107N, -109D, N111Q, T112S, -118V, -119K, I133V, S136V, I137R, V141I, Q142K, K150S, N158G, T161N, R164I, I166R, V172T, Y189F, N201K, K212A, F249I, H280P, E294N, H302Y, N304T, S306R, G307K, E308K, Q316E, A318V, -328N, Q361P, -368N, N369Y, -374T, -375D, -376P, -377L, N379D, -381L, S383N, P389Q, I395F, E401K, R416N, T427M, N432I, N434Q, N435S, T437S; gp41: V2A, G3-, F8V, L54M, K77Q, T101S, K106R, E110D, D113Q, K122R, D129S, L130V, N133K, E137Q, N160S, D163S, I173L, V178G, E224G, E225G, V247D, R259H, E280T, V281A, S293G, V318I, V321I, F326G, I329V, I332V; nef: S8R, S9G, -10L, -11G, D28E, H40Y, S46-, A50S, N51T, R71K, P75S, A83G, Y135F, E158A, Q170L, P176S, R178G, R188S, V194R, C206*; p1: K4R, H9N; p17: K28R, Y79F, K91R, E102D, S111I, K114R, A115V, S126N, Q127S; p2: T12N; p24: I15L, N120H; p6: N47S; p7: R34K, M46I; pro: E35D, R41K; rev: K14R, F21E, L22I, P31S, S56G, W58R, A68T, T91A, G98D, A108T, V109I, E111G, T114A, E116K; tat: R7K, T24N, F32Y, Q63E, V67G, S68D, P77L, P84Q; vif: I31S, A62D, K63R, I128R, T151A, I159R, A167T; vpr: T19A, A55T; vpu: Q2N, Q5Y, A8S, I18L, S24T, F27L, R35K, K38R, D44E, E60D, L61Q, S62E, A63E, V65L, E66-, M67-, G68-, H74D, 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S39N, I101L, A124N, K219N; RT-p51: W88C, H121Y, D123G, I135V, S162Y, F171Y, I178M, F214L, K245T, P272A, K275R, Q278K, D324E, K356R, R358K, K366R; RT-p66: W88C, H121Y, D123G, I135V, S162Y, F171Y, I178M, F214L, K245T, P272A, K275R, Q278K, D324E, K356R, R358K, K366R, M452K, T470M, E471D, L491S, S554T; gp120: A3T, L6M, E19D, K21T, K37V, V57L, E59G, E69K, I80V, K89Q, N102D, -105D, N108-, T110-, N113-, -124G, S130T, T134A, T135E, I137S, Q142K, K143T, V144A, H145R, K150A, V153I, P155Q, D157N, N159S, -162K, I166T, N167H, T170A, T174K, S181T, K203E, N206S, P210L, A238N, E239L, E240A, -241G, V242Q, I243V, E265N, N267T, T269V, S278G, I281M, Q287R, A288G, F289M, Y290F, A291Y, T292A, G293N, T308K, R322G, H324Y, -326N, N328A, K329T, T330I, I332-, S336P, S337P, T344M, S347T, K361Q, -368T, N369W, T371N, -372N, -373S, -375A, -376I, -377V, -381N, -382G, P389Q, Q412P, V418I, N420D, R428H, V431L, -433G, N435T, -436N, N437T, -438T, T439I, T471G; gp41: M4I, F7V, F8L, A21T, S23A, I24L, R46K, E49Q, H53Q, K106R, Q108Y, D109S, E110D, M115L, D129E, D153G, K154D, S165T, N166K, P213S, R214K, L304F, N305D, R334T; nef: I10V, A23T, E24R, E28A, D38A, R39T, P53S, D54S, E64D, T80S, G83A, Q107A, E108D, Y115H, Y120F, C163S; p17: K12R, K26R, K28Q, R30K, L46I, A54S, Q59K, I61L, T72S, Y79H, V82I, E93D, D102E, K103Q, E106K, S111G, K114R, T115S, A118K, A120D, S126N; p2: A10T; p24: Q50S, A116T, P123V, K154R, E180D, P207Q, S225G; p6: P30L, D32E, S51L; p7: P9Q; pro: N37H, P39S, I72V; rev: D7A, P31L, A32Q, S54T, E57D, P67S, S86G, E87Q; tat: D2E, N7S, L8Q, K19E, N24S, L36M, R53S, T77P, G79D, D80H, *87S; vif: N19R, M29I, S46T, G101D, Q105R, K122S, K141Q, P156S, T159R, V170T, T188S; vpr: H15F, N28S, R36N, Q41N, H45Q, E58V, V89A, S93A, S96P; vpu: -6E, I13V, I18L, I20V, V21I, R37K, R47S, K63T, -75A, -77W, -78H, 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R20K, M50I, V112I, A124G, D134G, I135V, R173K, N219K; RT-p51: K103N, S107T, H121Y, I135T, S162N, I178M, P243T, V293I, K297T, A304E, D335E, A376C, A435V; RT-p66: K103N, S107T, H121Y, I135T, S162N, I178M, P243T, V293I, K297T, A304E, D335E, A376C, A435V, K454R, R463K; gp120: V3G, E34S, N52S, D71N, E74D, T78E, N102E, T104G, -106V, -107G, -109K, -111S, -114S, -115N, -116S, -117S, -118A, -119S, -120L, K127T, V136A, K140R, Q142K, H145Q, L151I, D157-, T160E, -162L, S181T, E240G, -241Q, S278G, Y290V, T292G, G293E, D294V, D297N, E307G, H315Y, K316N, T319N, N327-, K334E, T345S, S347T, K361R, -368N, T374-, N378-, N379-, T380-, R391K, R428L, G430R, G431Y, N432V, -433D, S434N, N435G, -436T, -438V, F440L, K462Q, V468I; gp41: Q108Y, S125D, V137I, A151S, A156S, I177V, V178I, V194I, R196S, I210T, P213A, G215R, D230G, I235T, N239S, L242F, P243I, E247Q, R250W, I301V, A310V, I321L; nef: K4R, S15R, M20I, A32P, N51R, D98E, I101V, Q125H, E133V, F135Y, T138C, C163S, I168M, R178K, M182V, K184R, R188H; p17: E42D, G49D, E55D, E62G, K69Q, L75I, Y79F, T84V, R91K, K98S, G102N, I104V, E105K, K114T, V128I; p2: V7M, A10M, A11N, A12T; p24: A54T, T58S, L83T, R203K, S225G; p6: S14C, S24P, P30M, D32E; p7: M1V, I12T; rev: P31R, G33E, T61H, G65A, R66G, A68V, S106P; tat: N7K, N24G, K29N, S61G, N67D, S75P; vif: Y30H, K37D, Y44F, D61E, T67I, H73N, D113N, S130Y, A137T, I154V, A155T; vpr: N28S, P37A, E55R, I61T, I70T; vpu: F16G, I18L, A19C, I28L, K35Q, R37K, K63T, M67R, L82V"}}},{"name":"KU168279","node_attrs":{"div":0.11682999999999999,"accession":"KU168279","clade_membership":{"value":"H"},"country":{"value":"CF"},"date":{"value":2002.0},"Strain_name":{"value":"LA25LeMi"},"LANL_subtype":{"value":"H"}},"branch_attrs":{"mutations":{"nuc":["A66C","A67T","G92A","T153A","T154A","T156-","A224G","T227A","G278A","G354A","A388G","A417C","C471A","T473A","A549T","T567A","G579A","G614T","G629A","A640G","G641A","C662T","A678G","A690G","G693-","C694-","T695-","G696-","A697-","T698-","A699-","A700-","A701-","T731C","A740G","C749T","A759C","T760C","T782C","A803G","G818A","T858C","C884T","A941G","T1004C","A1034G","G1109A","C1118T","A1242T","C1243G","A1263T","G1298A","T1359A","A1400G","A1450C","A1474G","C1481T","A1496G","G1588A","C1692A","G1766A","C1767T","T1768C","A1771G","C1782-","C1783-","-1785T","-1786C","A1793G","G1852A","A1870G","A1990G","C1996T","T2080C","G2224A","T2347C","C2353T","C2356T","A2398G","G2459A","A2512T","T2527C","A2563T","A2592C","T2635C","A2686G","C2715A","T2716G","G2728A","A2755G","A2887G","A2919G","A2929C","A2938G","C2968T","G2989A","G3019A","G3029A","A3030C","T3059G","A3099G","A3116G","C3133T","A3217G","C3266T","G3427A","G3439A","G3454A","A3491G","T3496C","T3497A","G3505A","T3544C","A3643G","G3680C","G3685A","T3695G","A3835G","A3910G","A3964G","G4081A","A4109G","G4145A","C4149T","G4175A","G4267A","A4303G","A4376G","T4405C","A4432T","A4474T","A4642G","T4678A","T4679G","A4692C","G4695A","A4697G","T4761G","T4769C","T4772C","C4781T","A4838T","G4856A","G4949A","A4950C","A4956T","A5015C","A5059G","A5065G","A5087C","C5116A","A5136C","G5140A","A5155G","G5167A","G5179A","G5200A","A5285G","G5296A","C5356T","C5382A","T5391C","C5397T","T5399A","A5471T","T5482G","G5538A","A5565G","G5566A","A5574G","C5579T","A5581G","C5584T","A5601C","A5602T","A5619C","G5623A","G5624C","A5625C","C5663T","G5706A","C5727T","A5733G","T5789C","C5792G","C5793A","A5795G","C5797A","G5803C","G5805C","-5809C","-5810T","-5811T","-5812G","-5813T","-5814G","-5815G","-5816A","-5817G","-5818A","-5819G","-5820G","-5821G","-5822G","-5823G","T5826G","G5853A","G5856A","C5859T","A5865G","C5869T","C5878T","A5946G","C5956A","A5957C","A5964T","G6059A","G6079A","A6124C","A6136G","A6172C","-6173A","-6174T","A6188G","C6190G","G6192T","T6196C","-6201A","C6205T","-6207C","-6208A","-6209T","T6210A","-6211C","-6212A","-6213C","-6215G","-6216A","-6217C","A6221G","G6225A","C6293G","T6298C","G6311A","T6328G","A6333G","G6379A","T6436G","T6445C","C6489T","A6505G","A6525G","A6571G","G6572-","A6573-","A6574-","C6575G","A6593G","C6607T","A6611G","C6613T","A6622C","T6643A","C6660G","A6683C","-6689G","G6693A","T6719A","G6725A","C6777G","C6779G","A6781C","A6785G","T6787G","A6791G","T6794C","A6798C","A6809C","G6819A","A6820G","-6833A","T6850A","T6853C","A6855G","A6875T","G6905A","G6940A","A6974-","T6976-","-6979C","-6980G","-6983A","-6984A","-6985C","T6988A","A6990C","A6992T","-6996G","A6997C","-6998A","-6999C","T7003C","-7005A","C7006T","-7009A","C7045G","A7066G","A7089G","A7090C","A7094G","G7106A","G7137A","G7143A","G7152T","A7154T","A7157G","A7158C","T7159A","T7162G","-7164A","-7166T","-7167T","-7171T","G7182T","T7192G","A7240G","T7321C","A7366G","A7373C","G7440A","A7492G","C7561T","A7621G","G7640A","C7678T","A7689G","T7713A","C7723T","T7796A","T7852A","T7853C","G7862T","G7915A","A7938G","A7953G","G7964A","A7974G","T8016C","C8031G","C8038A","G8044A","G8079T","G8107A","T8124A","A8152G","T8155C","A8163G","C8189T","T8197G","T8203C","G8254A","T8323A","G8330A","A8354C","A8388G","G8414A","A8423T","A8426G","A8486G","T8492C","C8510A","A8525G","C8552T","T8594C","T8595C","C8603G","A8653G","G8682A","A8744G","A8824C","C8825T","A8829T","G8846A","G8873A","C8906A","G8917C","G8923C","T8935G","T8972A","T8973-","G8991A","T9029C","A9042G","T9176A"],"INT":["A124T","A125V","D134N","I201V"],"RT-p51":["E122K","K166T","A207E","K275R","Q278H","E312T","S322A","D335G","I341V"],"RT-p66":["E122K","K166T","A207E","K275R","Q278H","E312T","S322A","D335G","I341V","I466V","S468T","E529Q","S534A"],"gp120":["S1N","T2V","E4G","K31R","T35P","K37M","E69K","T78A","E105D","-106G","-107E","N108Q","T110-","N113-","-126L","L147V","V153I","T161K","T212M","K224R","K247E","T253A","T269S","K277Q","I279V","F289I","T308R","Q309D","N311E","T313A","H315S","T319Q","R322K","K334R","I341L","G351R","-368D","S370K","-372S","-373S","-381M","N397K","Q412S","N414D","V418I","R428N","G430E","-433M","N435A","-436E","-438F","G443V","D446E"],"gp41":["I24L","R46K","D113N","D129G","V137D","N140T","S165T","V187F","N212S","D217G","G221R","E224G","V238A","P243R","R259L","L274Q","N287S","N298K","F340L","A343T"],"nef":["K4N","I16V","T48M","K104R","V114I","N161T","M182I","R192T","R194T","Q198R"],"p17":["V7I","K18R","K28Q","L46I","T72S","K76Q","L78I","V82I","E93D","T115A","T119A","A120E","D121K","K122D","E123S","D125-","S126-","K127-"],"p2":["N9T"],"p24":["M10P","T171C","T178S","S210T"],"p6":["P5T","P30S","K31R","P35S"],"p7":["K3R","R41K"],"pro":["I64M"],"rev":["S8N","K17R","K20R","R39K","T61E","L64M","E87K","I102V","S103P","A114V","*117E"],"tat":["D2E","L8Q","Y32F","L36V","D64N","P68L","I69V","P70S","T77A","T82A"],"vif":["N19R","I31K","K36Q","L59V","K122Q","I124L","K158R","K160R","R167S","P177H","G185E","N190S"],"vpr":["Q11P","E55G","I61V","T84I","P93T","S96P"],"vpu":["G6T","A19V","E60D","L61T","S62-","M67-","G68-","-69V","-70E","-71R","-72G","H73Q"]},"labels":{"aa":"INT: A124T, A125V, D134N, I201V; RT-p51: E122K, K166T, A207E, K275R, Q278H, E312T, S322A, D335G, I341V; RT-p66: E122K, K166T, A207E, K275R, Q278H, E312T, S322A, D335G, I341V, I466V, S468T, E529Q, S534A; gp120: S1N, T2V, E4G, K31R, T35P, K37M, E69K, T78A, E105D, -106G, -107E, N108Q, T110-, N113-, -126L, L147V, V153I, T161K, T212M, K224R, K247E, T253A, T269S, K277Q, I279V, F289I, T308R, Q309D, N311E, T313A, H315S, T319Q, R322K, K334R, I341L, G351R, -368D, S370K, -372S, -373S, -381M, N397K, Q412S, N414D, V418I, R428N, G430E, -433M, N435A, -436E, -438F, G443V, D446E; gp41: I24L, R46K, D113N, D129G, V137D, N140T, S165T, V187F, N212S, D217G, G221R, E224G, V238A, P243R, R259L, L274Q, N287S, N298K, F340L, A343T; nef: K4N, I16V, T48M, K104R, V114I, N161T, M182I, R192T, R194T, Q198R; p17: V7I, K18R, K28Q, L46I, T72S, K76Q, L78I, V82I, E93D, T115A, T119A, A120E, D121K, K122D, E123S, D125-, S126-, K127-; p2: N9T; p24: M10P, T171C, T178S, S210T; p6: P5T, P30S, K31R, P35S; p7: K3R, R41K; pro: I64M; rev: S8N, K17R, K20R, R39K, T61E, L64M, E87K, I102V, S103P, A114V, *117E; tat: D2E, L8Q, Y32F, L36V, D64N, P68L, I69V, P70S, T77A, T82A; vif: N19R, I31K, K36Q, L59V, K122Q, I124L, K158R, K160R, R167S, P177H, G185E, N190S; vpr: Q11P, E55G, I61V, T84I, P93T, S96P; vpu: G6T, A19V, E60D, L61T, S62-, M67-, G68-, -69V, -70E, -71R, -72G, 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A125T, A278D; RT-p51: N334D; RT-p66: N334D, I495L; gp120: E267N, G307E, -374T, -377S, -385T, T387I; gp41: Q77K, M115L, G215E, P216L, G221R, T270I; nef: I16V, H116N, Y120F; p17: Q112K, -128V; p24: K154R, P207Q, T210S; pro: I13V, G16E, M89I; rev: I78L; tat: N40K, L68P, D80N; vif: L8M, K67T, Q105K, M109L, D134E; vpu: -6I, I18L, R47A, E58D, -68G, -69N"}},"children":[{"name":"MF372645","node_attrs":{"div":0.13687,"accession":"MF372645","clade_membership":{"value":"CRF92_C2U"},"country":{"value":"CD"},"date":{"value":2008.0},"Strain_name":{"value":"DRC796"},"LANL_subtype":{"value":"CRF92_C2U"}},"branch_attrs":{"mutations":{"nuc":["A224G","G317A","A326G","G362C","A365C","G368A","A380C","G401A","C418G","A419C","A424G","C426T","A435C","G491A","A499T","T516A","A524G","C528A","C590T","A607G","G608A","G644A","A654T","G671C","A676C","C684A","G693A","C747A","A774C","G791A","A839C","A878G","C879G","A880C","G956A","T988C","T992G","T1004C","G1019A","A1101G","G1109A","C1115G","T1260G","T1263A","G1271A","A1307G","G1341A","A1459G","C1490T","A1565G","A1586G","G1589A","G1619A","T1646C","G1657A","T1658C","A1670T","G1673A","T1676C","T1679C","T1681C","C1721T","A1725C","G1733A","G1743C","A1759G","A1771-","G1772-","G1773-","C1775-","A1780T","T1781C","C1783T","T1784G","G1785C","C1786T","T1787C","C1790T","T1792G","G1794A","A1795C","T1797-","C1825T","T1831C","A1832T","T1854C","G1855A","A1894T","A1907T","A1908C","C1966G","T2035C","T2041G","T2104C","A2140G","C2281T","A2362G","G2456C","A2461G","A2462G","G2473A","C2485T","T2499G","C2533T","T2542C","G2583C","C2620T","A2674G","G2682A","G2705A","A2727G","T2737G","C2831T","T2908C","C2909T","G2926A","G2929A","G2947A","C3067A","T3068A","C3100T","G3168A","G3211A","T3225G","A3391T","C3394T","C3449T","G3477A","A3565G","G3595A","A3684G","A3733G","C3734A","T3754C","T3755A","C3773T","A3795G","G3808C","T3856A","G3878C","G3891A","C3908T","T3970C","A4003G","A4012G","G4027A","A4030G","G4060A","T4110C","G4145A","G4156A","A4246G","G4285A","C4381T","C4412T","A4433G","A4555G","G4636A","T4679C","T4702A","C4754T","T4761G","T4776C","T4800C","T4805G","T4820C","G4859A","C4890A","A4966G","G4982T","C5034T","A5057G","T5102C","A5112G","A5113G","G5143A","C5213A","C5221T","A5225G","C5251T","A5278G","C5285T","C5311T","-5359C","A5400C","T5424C","A5432G","T5457C","C5491T","G5548A","A5557G","T5612A","-5626A","T5648G","C5653A","A5659T","A5721G","A5733G","A5734G","G5737A","G5747A","T5787A","A5788T","C5789T","A5790G","-5791T","G5808-","G5842A","T5843A","T5854G","T5857G","G5882A","G5893A","G5900A","G5902A","A5935C","G5956T","A6028C","A6061C","T6072C","G6073A","A6092G","A6121G","A6136G","-6167G","-6172A","-6174C","-6175C","A6177C","-6180A","C6183G","T6184A","-6186C","C6189A","T6190A","A6194T","-6195C","-6196T","-6198C","A6200G","-6201A","-6202C","-6207C","-6208T","-6209C","-6211G","-6212T","A6253G","A6263T","A6266T","T6287C","C6293T","A6327G","G6339T","T6340A","C6347T","T6358C","A6368G","G6373A","C6397G","T6409C","C6469T","C6548T","G6550A","C6559T","G6577A","A6589G","G6611T","A6616G","G6631C","T6643A","G6644T","T6676C","-6689G","A6723T","G6732A","A6733C","A6734G","A6751G","C6787T","A6796G","A6799T","G6806A","T6815A","C6818A","C6824G","T6826A","T6827C","T6828A","C6829T","-6830T","-6831T","-6832C","-6833A","-6834A","-6835G","G6850T","A6855G","A6881G","C6895T","C6938T","A6944T","A6945C","C6951A","A6952C","C6966-","-6983A","-6989G","-6990A","-6991C","-6992A","-6993C","-6994A","-6995A","-6996A","-6997A","-6998A","-6999G","-7000C","-7001A","-7002A","-7003T","-7005A","C7009A","T7087C","A7090G","A7106G","T7114C","G7132A","C7136T","A7138G","G7145C","G7146A","-7153T","C7164G","A7169G","-7170T","A7245G","C7250A","A7256G","C7267T","A7268G","A7396G","A7402G","C7429T","A7477G","A7522G","C7590G","C7605G","C7625A","A7646C","C7690A","C7699T","A7722G","C7747A","A7750G","G7753A","A7773G","C7792A","T7801A","A7840G","G7880A","A7931G","T7932C","C7940T","A7953G","C7959T","A7977G","C8005G","T8028C","G8085C","G8093C","A8095C","G8107A","C8147T","C8155T","T8169C","G8170A","G8194A","C8221T","A8224T","G8254A","G8264A","G8267A","C8286G","T8287C","-8292A","-8309A","-8330G","G8354A","T8387G","A8400C","G8402A","C8445A","G8461A","G8465A","A8474C","A8530G","A8534G","A8555G","C8603T","C8640T","A8655C","G8666C","G8678A","C8684T","C8699A","G8738A","T8770A","T8786G","A8798C","A8804G","G8822A","T8847A","A8874G","A8885G","C8906A","A8969C","G8970T","A8971C","G8978A","T9012A"],"INT":["K7R","E11D","N17S","N27K","E35Q","S39N","M84I","V112A","A124T","I220V"],"RT-p51":["D121H","N123D","I135R","S163T","K174Q","G196E","E204K","K211R","F214L","P272S","D324E","L325I","R358K","M377R","E432D"],"RT-p66":["D121H","N123D","I135R","S163T","K174Q","G196E","E204K","K211R","F214L","P272S","D324E","L325I","L329I","R358K","M377R","E432D","R461K","K530R","Q547K","S554T"],"gp120":["N5K","V10I","V16I","E34N","L58F","K69N","V73A","I80V","N105D","A106I","-107K","-109S","-111D","-112T","-113L","-114S","I137L","R138W","Y145H","N158S","N161T","S162Q","T172A","M173I","A253F","V264L","Y290F","A291T","T292D","G293A","D294V","H302Y","E309K","Q315K","K316-","V317-","A318-","K319-","K320-","L321-","Q322-","E323-","H324-","F325-","V332I","Q334R","I343V","N364S","R365-","T366-","Y367-","-373D","-375I","-378N","-384D","I418V","R428W","G431H","-433S","N434T","T436E","N437S","T439A","K464R","L466I","I468V","K472E"],"gp41":["T96S","T101S","Q108K","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K7R, E11D, N17S, N27K, E35Q, S39N, M84I, V112A, A124T, I220V; RT-p51: D121H, N123D, I135R, S163T, K174Q, G196E, E204K, K211R, F214L, P272S, D324E, L325I, R358K, M377R, E432D; RT-p66: D121H, N123D, I135R, S163T, K174Q, G196E, E204K, K211R, F214L, P272S, D324E, L325I, L329I, R358K, M377R, E432D, R461K, K530R, Q547K, S554T; gp120: N5K, V10I, V16I, E34N, L58F, K69N, V73A, I80V, N105D, A106I, -107K, -109S, -111D, -112T, -113L, -114S, I137L, R138W, Y145H, N158S, N161T, S162Q, T172A, M173I, A253F, V264L, Y290F, A291T, T292D, G293A, D294V, H302Y, E309K, Q315K, K316-, V317-, A318-, K319-, K320-, L321-, Q322-, E323-, H324-, F325-, V332I, Q334R, I343V, N364S, R365-, T366-, Y367-, -373D, -375I, -378N, -384D, I418V, R428W, G431H, -433S, N434T, T436E, N437S, T439A, K464R, L466I, I468V, K472E; gp41: T96S, T101S, Q108K, N129K, N140S, D148E, N157S, D163E, V193I, P213S, D217G, P219L, E225G, L242S, R261T, V264L, V289A, V321I, V322I, A328G, L330Y; nef: M20L, R40H, E62Q, K105Q, E108D, F143Y, E152D, C169S, S188Q; p1: R9H; p17: T28S, K30R, I34L, L61M, T62A, Q65K, K91R, I107L, K112N, K114T, Q117K, A120T; p2: T8N, N9T, -10S; p24: L6I, I15L, Q50A, V86A, H87Q, M96I, I124V, D128E, S177A, S178T, G204S; p6: L1P, A22P, -26R, K27Q, Q28E, E29K, D32-, S40-, K42-, S43-, L44-, P49L, L51S; pro: T12S, M19T, N37S; rev: P31L, H53D, E79D, C82S, I83L, E87K, S100L, P103S, A108T, E116K; tat: K19R, A58T, S61G, S75P, P81S, T82A, P84S; vif: R17K, F39Y, L59V, H73Q, L102M, H127R, R132S, R159I, N176G, S186N; vpr: Q3R, P37T, S41G, R85P; vpu: I2N, L5I, V7-, V10A, V14G, L16I, I43V, D44N, A47E"}}},{"name":"MF372644","node_attrs":{"div":0.14259,"accession":"MF372644","clade_membership":{"value":"CRF92_C2U"},"country":{"value":"CD"},"date":{"value":2008.0},"Strain_name":{"value":"DRC768"},"LANL_subtype":{"value":"CRF92_C2U"}},"branch_attrs":{"mutations":{"nuc":["A217G","-305A","G367A","C379A","A447G","A461T","C498T","A499C","C520T","A554G","G615A","A632G","G674A","A678C","C679A","C681A","G686A","A691G","T695G","G697A","C698A","A700C","A703G","A704-","-707C","-708A","-709A","-710A","-711G","-712A","-713A","T728C","G755A","A810G","A836G","T884C","T974C","G977A","G1077A","A1079C","C1137T","T1166C","T1244C","G1256A","T1262C","T1344C","C1362T","G1400A","T1409C","-1444C","-1445C","-1446A","C1447A","C1448T","A1450-","T1451-","A1452-","C1453-","A1454-","-1456C","-1457C","A1461G","G1476A","T1501C","A1503G","G1543A","A1563G","C1680A","T1682C","G1687C","G1726A","C1756A","A1771G","-1774A","T1796C","T1828G","A1832G","T1868C","T1873C","G1901A","A1907G","C1966T","A1972G","A1984T","G2042A","T2101A","A2191G","T2365C","A2368G","A2395G","A2413G","T2449G","G2602A","C2615A","A2629G","G2704A","A2707T","A2716C","T2803A","C2839A","A2842G","A2846C","G2847A","G2869A","C2909G","A2950T","C2960T","A2977C","C2978T","A3080C","A3124G","G3169A","C3223T","A3238G","C3274T","G3334A","T3399C","C3405T","G3427A","T3433C","G3439A","A3442T","G3494A","A3538C","G3556A","T3560G","A3570C","G3574A","T3602C","G3631A","G3643A","A3651G","A3676G","G3737A","G3772T","A3805T","A3824T","C3857T","T3889C","A3907G","T3967C","T4009C","A4064G","T4177G","A4228G","A4231G","T4258C","A4366G","A4397C","C4399A","A4410C","A4427T","A4459G","G4498A","C4501T","A4525G","A4528T","A4531G","C4543T","A4552G","A4573G","C4579T","G4622A","A4644G","T4646A","C4667T","G4677A","T4678G","A4684G","G4687A","T4691A","A4693C","G4694A","A4697T","G4719C","A4721G","C4724T","A4727G","A4737G","T4742C","T4761C","A4769T","G4774A","T4799C","G4816A","G4878A","A4937C","C5006T","T5018C","A5051G","C5052A","T5062C","A5065G","T5091C","A5122G","C5125T","A5146G","A5179G","A5200G","G5233A","C5237T","C5239T","A5290G","T5303A","A5305G","A5336C","T5339C","T5356C","-5359T","A5360G","A5447G","T5448A","T5472A","A5494C","T5511C","A5513C","G5538A","A5545G","A5547C","G5548C","G5575A","C5602T","T5612C","T5613A","T5614C","A5615C","-5620G","-5621A","-5622A","A5625C","-5626T","T5627G","A5628G","G5635A","C5639G","T5641C","A5659C","C5679T","T5684C","T5686G","A5687G","A5689C","T5704A","T5707A","T5708G","A5712G","A5717G","A5718G","G5720A","T5728A","G5730A","T5739A","G5747C","G5748A","T5787C","-5791G","C5792A","A5793G","C5797T","-5799G","-5800T","-5801C","-5802A","-5803G","-5804C","-5805G","-5806C","-5807T","G5811-","A5818G","A5845C","G5861A","A5865G","C5866G","A5907G","A5926G","A5955G","G6022A","A6030G","A6044G","T6076C","A6133G","A6142T","T6145C","C6163T","T6166C","-6167A","-6172C","-6174A","-6175A","-6180C","T6181C","T6184C","-6186A","T6187A","A6188G","A6191G","-6195A","-6196A","-6198G","-6201T","-6202A","-6203G","-6204G","-6205C","-6207T","-6208A","-6209G","T6210G","-6211T","-6212A","C6213A","G6214C","G6217A","G6218-","A6219-","G6220-","C6221A","G6225A","A6230C","A6234G","T6241C","T6246A","G6268A","C6271T","A6273G","A6274G","C6275G","A6278C","A6279G","G6280A","G6284C","T6285A","G6290T","G6303A","A6313G","C6317T","A6320C","G6323A","A6338G","C6427T","A6438T","G6442A","A6525G","G6526A","G6532A","A6572G","G6577C","A6605G","G6631T","T6655C","A6682G","A6683C","T6688C","-6689A","A6691G","A6752C","T6758C","A6764C","A6780G","A6781C","A6799G","T6838C","G6841C","A6848G","G6850A","A6861C","T6863G","C6864T","C6888T","A6889G","T6892C","G6935A","C6937A","T6949A","-6953T","-6954A","-6955C","-6956A","-6957A","-6958T","-6959G","-6960T","-6961T","-6962A","-6963A","-6964T","-6965A","-6967A","-6968A","-6969A","-6970C","-6971A","-6972G","-6973T","-6974A","-6975G","-6976T","-6977T","-6978A","-6979T","-6980G","-6981A","-6982G","-6983C","-7005G","A7016C","C7018T","G7026A","A7144G","-7153A","T7165C","G7166-","A7167-","G7168-","A7169-","C7171-","A7177G","T7180A","A7297G","C7313G","G7315A","G7322A","G7341C","G7366A","G7390A","A7426G","A7427G","T7432C","T7537A","G7608C","A7620G","C7625G","T7633C","T7642G","A7646T","G7658C","A7672G","T7681C","G7702A","T7775C","G7790A","A7791G","G7807A","A7818G","G7952C","A7962G","A7996C","A7998C","A8029G","G8105A","A8111G","G8136C","G8144A","C8146T","A8151G","A8175G","G8188A","T8200G","T8203A","C8210T","C8220T","T8223C","T8280G","C8290-","T8291-","T8293-","C8294-","A8295-","T8296C","G8323A","G8324A","A8329C","C8331-","G8349A","A8367-","G8368-","T8369-","A8370-","T8371-","A8372-","G8373-","T8374-","T8375-","G8376-","G8377-","A8378-","G8407A","A8457G","G8458A","A8459G","C8492T","C8514T","G8516A","A8519G","A8522G","A8525G","T8543G","A8567C","T8568G","T8585C","G8588A","C8597T","G8604A","T8646C","A8656G","G8666T","C8699T","T8740C","C8741T","A8746T","G8753A","C8756A","G8807A","A8812G","G8830C","T8835C","G8846A","G8861A","A8868C","G8914A","C8915T","G8917C","T8924C","A8969T","C8975A","G8978C","T9029C"],"INT":["E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R192T; p17: S9R, G11E, A15E, S38G, E42D, L55S, T62V, V94I, Q113-, -125K, -126Q, -127Q; p2: -10V, I13-; p24: I27V, A116T; p6: L1I, S3T, R16K, P25-, -26Q, K31R, L50W; p7: G4S, I12T, I13V, R26K, K33E; pro: T12A, E35K, N37D, V82I; rev: S8N, E11A, S61G, S86N, D88G, S99N, D114N; tat: N24R, F32L, K40Q, Y46S, R57G, A58P, D67N, K85E; vif: T20A, V31S, K33R, R34K, K36T, E45Q, I51V, E61D, R63K, R77K, V98I, E117D, P156T, R159T, K160R, K179R, T180I, H187R; vpr: H45Y, L67M, Q77H, I84T, R85L; vpu: I2T, Y3P, L5E, V7W, V10T, A11G, V26A, Y27G, I28L, L33I, L34R, K37R, R38K, W41R, D44E, E63A, M67V, E70L, M71R, G72L, N73L, L77-, 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K44E"}}},{"name":"AY727527","node_attrs":{"div":0.12904,"accession":"AY727527","clade_membership":{"value":"CRF31_BC"},"country":{"value":"BR"},"date":{"value":2004.0},"Strain_name":{"value":"04BR142"},"LANL_subtype":{"value":"CRF31_BC"}},"branch_attrs":{"mutations":{"nuc":["G90C","C96T","A133G","C150T","T200G","A214G","A360C","A400G","C435T","G491A","C499G","G518A","A519C","C521A","A525C","C540A","A561G","T587C","C618A","C635A","T695A","A697C","C698G","A699G","A700C","A701T","A704C","-705A","-706A","-707A","-708G","-709G","-710A","-711A","-712A","-713T","A714-","A715-","G716-","C749T","T777G","A899G","G1173A","T1174C","A1259G","A1277G","G1301A","G1313A","A1329T","G1349A","C1615A","A1642G","A1673G","A1709G","A1771G","A1849G","A2029G","C2202A","G2210A","A2223G","T2257C","A2404C","A2463G","C2575T","A2738G","C2739A","C2828G","A2839T","T2845G","A2923G","G2951A","G3221A","C3274T","A3279G","G3293A","A3403G","A3491T","T3492G","A3532G","T3541C","G3544A","C3545T","A3666T","A3676C","A3682G","T3712C","T3889C","C4105T","C4141A","T4177C","A4420G","T4640C","T4761C","G4769A","T4799A","G4802A","A4845C","A4888G","C4889T","A4900G","C4937A","A5007C","A5024G","G5062T","G5099A","A5113G","T5147A","A5200G","C5237T","G5382T","C5397A","T5454C","T5484G","A5613T","T5616C","-5620C","T5621C","T5626G","G5632A","A5640C","A5644T","C5653T","T5787C","-5809A","C5824A","A5845C","A5846C","T5862G","G5866A","A5879C","A5911T","T5956G","C6004T","G6029C","C6163T","A6176-","A6179G","-6180C","C6183A","T6184C","A6186G","T6187A","C6190A","A6191C","A6193C","C6195A","A6197G","A6201C","-6213T","-6214A","A6215G","T6217G","T6242A","A6275G","A6276G","A6279G","T6325A","A6327G","A6329G","A6335T","A6338G","-6340A","T6421C","C6441T","C6465A","A6505G","A6581G","A6602T","A6635C","A6649T","A6654C","C6660T","A6661G","A6682G","A6787C","A6789G","C6875T","-6953T","-6954A","-6955C","-6968T","-6969A","-6970C","-6971A","-6972A","-6973T","-6974A","-6975G","-6976T","-6977A","-6978C","-6979A","-6980G","-6981T","-6982T","-6993C","T6994A","-7002A","-7005T","C7064A","A7094G","T7095C","A7107T","T7114C","G7146A","C7147-","A7148-","A7151-","T7156G","G7322T","C7328T","G7369A","A7394C","A7402G","G7441A","T7498C","A7519C","T7537A","T7588C","G7589A","C7590A","A7629C","G7630A","A7688G","A7689G","C7692T","T7703A","G7717A","T7801A","C7876T","T7929G","T7932C","A7938T","G7965A","A8006G","T8008G","A8069T","T8094C","T8155C","G8158A","G8159A","G8160A","T8279G","G8292A","G8368T","-8370C","-8371C","A8400C","A8432G","C8488G","C8491A","C8597T","C8651T","A8655C","C8684T","A8746T","A8762C","G8780A","C8832T","A8837T","G8868A","T8883C","A8947T","G9007T","A9009G","G9035A","G9049A","G9063A","C9078-","T9084A","G9085A"],"RT-p51":["A36E","D39N","K43R","K103N","T215D","Q245E","E248D","D250E","A286T","A376T","K395R","A400T"],"RT-p66":["A36E","D39N","K43R","K103N","T215D","Q245E","E248D","D250E","A286T","A376T","K395R","A400T","I466C","Q524L","K527N"],"gp120":["M3R","T9P","E19D","D34E","E59Q","-105D","-106A","-107N","N108R","-109T","T110H","-112G","N113T","S114I","S115V","S130T","K141G","K142R","L156-","N157-","E158-","N159-","Y163-","R164-","I166E","N167S","A196V","T204K","I243V","T250S","H259Q","K261Q","E265N","N267T","T269M","K312R","-368Y","-370S","-372V","-379N","-381T","-383D","-384V","-385N","I414A","K418I","G431D","-436D"],"gp41":["I4L","V7L","L9F","D78E","A96N","E109A","N129G","T130I","L134M","L209R","I210T","N212I","G221E","I235V","S256C","I264T","R324G","W326G","C330Y"],"nef":["S9I","-10P","I20L","G29R","P49R","A50D","K105Q","Y135F","A176T","Y202F"],"p1":["K4R"],"p17":["K22R","M61I","N62Q","Q69K","I76V","A119E","D121A","K122A","-125G","-126N"],"p24":["S16A","V148T","T200S"],"p6":["K31R"],"p7":["T50N"],"rev":["K30N","H53R","S54A","Q74L","F103L","G104K"],"tat":["E2D","N7K","L74V","S75P","T77S","E86K"],"vif":["I87L","D101G","Q105R","D117E","K141Q","R159I","K176R","H187Q"],"vpr":["Y15N","H45Y","A93S"],"vpu":["-2F","-3T","-4L","-5P","-6E","-10G","I13L","H73N","N80P"]},"labels":{"aa":"RT-p51: 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Y15N, H45Y, A93S; vpu: -2F, -3T, -4L, -5P, -6E, -10G, I13L, H73N, 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I104V, T115I; p2: A7T, -10V, I13-; p24: T210S; p6: A25V, S40A; pro: K20R, E35D, D60E, V82I; rev: R38Q, K39R, T91A, Q95R, V109I, A114T; tat: V4I, K29H, I69V; vif: L8M, K50R, V51A, R63S, H127Q, I159R, K176E; vpr: Q3R, P37Y, I60L, I63T, R85Q, A89V, A93T, S94N; vpu: L4I, -5N, -6L, V7A, I9R, L12F, T24I, I43V, E58D, D60E, T61L, E62S, E63T, L64M, S65V, T66D, -68G, V69N, D70L, M71R, G72L, H73L, L74-, R75-, L76-, L77-, D78-, A79-, N80D, 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M50I, K269R; RT-p51: K211R, K275R; RT-p66: K211R, K275R, V531I; gp120: R150K, N334K, S336A, P389Q; gp41: R133K; nef: V16I, E98D, Y120F, M168I, M194L; p17: T15K; p24: I15L, S225G; p6: P30Q, T39I; pro: D60E; rev: K39R; vif: K17R; vpr: L22I, L42I"}},"children":[{"name":"KR820342","node_attrs":{"div":0.14219,"accession":"KR820342","clade_membership":{"value":"C"},"country":{"value":"ZM"},"date":{"value":2009.0},"Strain_name":{"value":"Z3618F_11Jul09_PL_NFLG_SGA11"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["C152A","T157G","G159T","T160-","T200C","T201C","-280G","G286A","A302T","G365C","C379A","G394A","C417A","A418G","G424A","G425A","C426T","C435T","G480A","A491G","T495A","C496A","A500C","A508G","A519C","C540A","T560A","A601T","A604C","A606G","C641T","A686G","G690A","T695G","A697C","C698T","A699G","A701C","T734A","C772T","T788C","C827T","T858C","C879A","A880C","G1002A","G1109A","G1139A","T1335C","G1339A","A1349G","T1359A","T1421G","C1453T","-1455A","-1456A","-1457T","C1460-","A1461G","G1474A","T1646C","A1700T","C1753T","G1766A","G1778A","T1864C","A1903C","A1907G","A1932G","C1960T","T1978A","A2056C","C2083T","A2140G","A2154G","G2173A","A2203C","G2293A","C2335T","T2369C","A2419G","G2463A","C2464T","C2467T","T2499C","A2508C","T2542C","A2579T","T2581G","C2620T","C2626A","G2630A","T2632C","T2638C","A2677G","G2707A","G2725A","A2764G","A2773G","A2839C","G2842A","A2883G","A2884G","A2918C","A2923G","C2927A","A2929C","A2937G","A2950G","C3013T","A3061G","A3088G","G3094A","T3112C","G3173A","T3181A","G3196A","G3205A","T3253C","C3274T","A3277G","G3292A","G3340A","T3349C","A3449C","T3450A","C3500T","G3556A","A3619T","T3628C","T3652C","G3667A","C3676T","G3685A","C3742T","A3769G","G3772A","G3775A","G3808T","G3846A","A3866G","A3876G","G3907A","C3908T","G3952A","A3955T","T3970C","A4057G","A4069T","A4108G","T4153C","T4165C","A4183G","C4204T","A4246G","T4247C","A4270G","A4519G","T4537C","T4633G","A4661G","G4677A","T4691C","C4728A","A4735G","G4737A","G4799T","A4811G","T4827C","A4850G","G4861A","C4937A","A4950C","C4976A","C5034T","T5062G","T5102C","A5112G","G5128A","A5159G","A5173G","C5182T","A5248G","T5275C","A5282C","A5284G","T5293C","C5294T","T5314C","C5333T","G5386A","C5397A","A5453T","T5454C","A5462G","A5467T","T5490C","A5537G","G5538A","G5546A","C5547G","G5548A","G5565A","C5579T","G5599T","T5600C","A5601T","A5603T","T5604A","G5605A","A5608G","A5611G","T5612A","A5613T","A5614T","A5615T","T5617C","-5620G","G5624A","-5626G","C5653T","A5685G","G5700A","G5711A","A5712G","A5734G","T5736G","A5739G","A5742G","T5789C","A5790T","C5792A","A5793G","C5795A","A5797T","-5801C","-5802A","-5803A","-5804C","-5805A","T5826-","A5830-","G5831-","T5836A","T5837G","G5839C","A5840T","G5842T","T5844G","A5845G","T5851A","T5859G","-5867A","-5868A","-5869C","T5870A","C5924T","A5959G","C5974T","T5980C","A6020T","G6022A","T6024C","G6029A","A6032G","T6034G","A6043G","A6118T","A6158G","T6163C","-6169G","-6172T","-6175T","G6179C","-6180A","T6181G","-6186T","-6198G","-6218G","-6219A","-6220G","-6221T","-6225A","-6226A","G6251A","A6253G","G6263T","A6275C","A6278G","G6280A","A6285T","A6287C","C6317A","C6318A","A6319T","A6324G","T6325A","T6331C","C6333G","T6334C","G6336A","T6337C","A6339G","-6340C","A6413C","A6475T","C6496T","C6545T","A6573G","G6577T","C6612T","G6653A","T6654A","G6655T","C6667T","A6686-","G6687-","T6688-","G6689-","T6690-","G6691-","A6692G","G6694T","-6697A","-6698G","-6699G","-6700G","-6701A","-6702T","C6766T","A6773G","A6776T","A6788G","G6803A","G6809A","A6823G","-6830C","-6831C","-6832C","C6833A","C6834A","A6836-","A6837-","T6838-","A6848G","T6883C","T6916C","C6919T","C6938T","T6949G","-6953T","-6954T","-6955T","-6956A","-6957A","A6959G","A6960G","G6963C","T6964A","C6966A","-6967T","C6970G","-6973T","-6981G","-6982T","-6983T","C6984A","-6986T","-6988A","-6992A","-6993T","-6994C","-6995A","-6996A","-6997A","-6998G","-6999G","-7000C","-7001A","C7008A","A7027G","C7079T","A7095G","A7100G","C7101T","A7108T","T7130C","G7132A","A7144G","A7151G","-7153C","T7156G","-7162T","G7199A","G7234A","G7246A","A7252G","G7270C","G7309A","T7325C","T7403C","A7420G","G7428A","T7432C","G7441A","A7517C","A7532C","A7553C","A7590G","A7605T","G7608C","T7609G","T7624A","C7625A","G7628C","T7630A","T7633C","A7688G","C7699T","A7734G","C7771A","A7782G","A7796T","T7801C","T7852C","T7913C","A7938C","C7941A","G7947A","G7995A","A7996C","G7997A","A8014G","G8019A","A8029G","G8030C","G8036A","C8037T","G8050A","A8069T","T8115C","T8122C","C8189T","T8203C","G8216A","T8223C","C8232T","A8284G","T8291A","G8292T","A8294C","C8320T","T8321G","C8328T","A8337T","A8370G","C8382T","A8390T","A8399G","A8402G","G8414A","C8483T","G8490C","G8491A","C8514T","A8519G","A8522G","A8534G","T8563C","T8672G","A8688C","T8708A","T8711C","G8729A","G8739A","T8740C","C8751T","A8793C","G8794A","G8805A","A8806G","C8835T","C8840T","G8861A","C8873A","A8892C","G8905T","C8906G","C8930T","G8933A","T8935A","T8947G","T8948G","T8993C","G8994T","C9028A"],"INT":["E11D","S24N","I31V","K34R","D286E"],"RT-p51":["K20R","S123N","I135T","E138A","S162W","D177E","V179I","E248D","K263R","Q278N","K281R","A360T","M377I"],"RT-p66":["K20R","S123N","I135T","E138A","S162W","V179I","E248D","K263R","Q278N","K281R","A360T","M377I","I452Q","V466I"],"gp120"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E11D, S24N, I31V, K34R, D286E; RT-p51: K20R, S123N, I135T, E138A, S162W, D177E, V179I, E248D, K263R, Q278N, K281R, A360T, M377I; RT-p66: K20R, S123N, I135T, E138A, S162W, V179I, E248D, K263R, Q278N, K281R, A360T, M377I, I452Q, V466I; gp120: V2G, -5N, L6M, M56L, V57A, E59K, N60E, N102D, -105K, -106V, -107N, N108V, -109S, T110A, -112Q, N114S, -115S, -122E, -123Y, -124E, V133M, K141Q, K142E, E144V, Y145H, P155N, D157G, N159S, N160S, -161N, I187L, E240G, E241D, A253V, V267N, S278G, V279I, R280G, D294A, K307E, -308Y, V317I, K332E, G361N, S365R, -367F, -368N, N369G, -370T, T371N, -372W, -373I, P409S, N414S, T416V, K418N, N434G, E436D, D449N, E472D; gp41: F8L, S42N, I72L, K77Q, I84L, N96S, S101I, S102T, S107T, Q108K, D109Q, E110D, N129D, K144R, N156K, N160S, T165S, N212T, P213Q, R231N, D232N, A243P, A245I, S256C, V271A, D305N, I307T, A310V, V321L, I322V, R330I, N331H, F340V, A342V, Q345L; nef: I10V, P14S, I20M, S50H, V74A, E108D, N116H, V133T, R151Q, E155R, M173I, D177E, K184Q, S188M, L198Q, F202W; p17: R20K, Q28S, R30K, G49S, S54K, E55D, K58R, K62Q, Q69K, H89L, E90A, K91E, A119K, D121A, K122D; p2: -10I, -11N, -12V, I13-; p24: A14V, Q50T, V91I, R203K; p6: A25V; p7: R3K; pro: E35D, N37D, K45R; rev: S8D, A11R, R17K, K30N, R50Q, S56G, S61A, C63Y, A68T, Q74L, S92P, A114V; tat: V4I, N7K, Y26F, K29S, S31C, Q54R, S57K, A58T, P68L, T77P, D80N; vif: M16R, V31I, H48N, K50R, V51I, R92K, D117E, K122Q, S130R, I159R, K176E, R181K; vpr: Q3R, T19A, I60L, S94N; vpu: R35K, I43V, S65A, A79-, N80-, L82I"}}},{"name":"MT194138","node_attrs":{"div":0.14327,"accession":"MT194138","clade_membership":{"value":"C"},"country":{"value":"ZM"},"date":{"value":2011.0},"Strain_name":{"value":"ZM1044M_16Aug2011_1A_23_N"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["C152T","T155G","G224A","T263A","-281C","A354G","A356G","A362G","G367A","A369C","T377A","C379G","A399C","C419A","A516C","A518G","A519G","A521C","C525A","A530T","C537A","G554A","C575T","A638G","G651A","G654A","A655G","A656G","T666A","A674G","G683A","-705A","-706A","-707T","-708A","-709C","-710C","-711A","-712G","-713T","A714-","A715-","G716-","G717-","T718-","C719-","A720-","G721-","T722-","G740A","G771C","A776G","G821A","C823G","G829A","C876T","A881G","A1089G","T1091C","T1103C","C1137T","T1143C","C1175T","A1192G","C1229T","G1271A","G1301A","C1304T","C1330A","A1367G","A1418G","T1421A","A1433C","C1439T","C1444T","A1450G","-1458A","-1459A","A1464C","T1484C","C1492A","A1500G","T1501C","T1505G","C1541T","G1552A","G1568A","C1610T","A1691G","G1697A","C1706A","T1722C","C1749T","C1751T","A1781G","T1797G","G1819A","T1832A","G1852A","G1861A","T1868C","G1972A","T1978G","C1979G","A1981C","C1985A","T1986C","A2018G","A2029G","A2059G","C2071A","G2221A","A2371G","T2449G","A2455G","A2462G","T2542A","C2589T","C2605A","C2615A","T2644C","T2654C","G2682A","G2683T","A2699G","C2720T","T2737C","C2806T","G2925A","A2929T","G2947A","A2992T","G3016A","A3070G","T3118C","C3121T","G3154A","A3224C","A3283C","G3324A","G3325C","G3379A","A3395C","A3397G","C3399A","C3405T","A3421G","A3449G","A3491G","G3494A","T3497A","A3535G","T3541C","A3565G","C3567T","A3571G","A3583G","A3601C","G3643A","A3646G","G3684A","C3763T","T3778C","A3817G","G3825A","A3901G","C3940T","T3943C","T3946C","A3989G","G4036A","A4066C","A4076C","C4079T","G4092C","G4103A","C4210T","A4225G","A4267G","T4276G","C4381T","A4420G","T4674C","G4677C","T4678G","T4679G","A4683G","A4688G","A4692C","T4702A","A4717T","G4723C","C4757T","T4769A","A4817G","T4820G","G4829A","T4857C","A4901G","T4967C","G4975C","C4976T","C5006T","T5018A","G5045A","A5058C","A5090G","G5131A","C5149T","A5150C","T5152G","G5188A","C5221T","A5248C","G5269A","T5293A","C5342T","T5439C","T5442C","A5444C","A5446G","C5463A","C5495A","C5579A","A5614G","-5620C","C5621A","-5626T","G5632A","T5684C","A5703G","T5705G","G5707T","A5716C","G5717A","A5718T","A5720G","G5725A","G5730T","G5781T","T5787A","A5788T","G5791T","A5793C","G5794A","-5801T","-5802G","-5803G","-5804A","-5805T","-5809G","-5810G","-5811G","G5812-","T5813-","G5814-","G5815-","A5816-","T5817-","A5818-","T5819-","G5820-","G5821-","G5822C","C5824T","-5827T","-5828A","-5829G","A5830G","G5831C","C5833T","T5834C","T5836-","T5837-","T5843C","G5866C","C5884A","T5887C","A5918G","G5965C","G5972A","A5995G","A6030G","C6097T","A6124C","T6166A","-6169T","-6172C","A6176-","A6177-","T6178-","G6179-","A6182G","T6184A","-6186A","T6189C","C6190T","A6192C","T6193A","A6197-","T6199-","-6205G","-6206T","-6207A","-6208A","-6209A","-6210T","-6211G","-6212T","-6213A","-6214A","-6215C","-6216T","-6217G","-6225C","-6226T","A6234G","A6235G","A6285C","A6287T","A6304G","C6320A","T6325G","A6329G","T6331G","A6338G","-6340G","G6345T","A6346G","T6365A","G6368A","C6370T","A6371G","T6395A","T6436G","A6471G","C6477A","T6598C","C6613T","A6640G","A6649G","T6658C","A6682G","A6734G","T6735A","G6743A","T6769C","A6774G","A6777G","A6781T","A6786C","A6789G","A6790G","T6794C","A6819G","G6821A","A6840G","A6848C","T6853C","A6856G","C6857T","C6888T","A6889G","G6906A","A6935T","A6936C","-6956T","-6957T","A6962G","-6967A","G6969A","-6973G","-6974A","-6975A","-6976T","-6977G","-6978C","-6979T","-6980A","-6981C","-6982A","-6983A","-6986G","-6988T","-6992T","-6993C","-6994A","A7021G","G7026A","A7040G","A7056G","G7065A","A7129C","G7152C","-7153A","A7154G","T7156A","A7161G","-7162C","A7169G","C7170T","T7222C","T7228C","A7256G","C7264T","T7267C","G7268T","A7269C","G7271T","A7275G","G7366A","G7369A","C7393T","C7429T","G7502A","A7519C","C7595T","C7596A","C7603T","A7604G","T7606A","T7618C","C7623G","C7625T","A7627T","G7628A","T7633A","T7636C","A7689C","A7722C","A7735T","T7747C","G7764A","T7765A","G7777A","C7792T","T7801G","G7835A","C7874A","C7876A","T7879C","G7918A","T7921C","A7953G","C8005G","C8103T","A8104G","G8105A","G8144A","C8145T","C8183T","A8185G","A8191G","A8204G","A8207G","G8208A","C8238G","G8261-","A8262-","A8263-","T8264-","T8265-","A8266-","G8267-","T8268-","A8269-","C8270-","A8271-","A8272-","A8273-","G8274-","A8275-","A8276-","T8277-","T8278-","T8279-","G8280-","T8281-","A8288T","C8296T","T8298G","C8300-","T8302A","G8304T","A8309C","T8310A","A8311G","A8312G","C8320A","G8324A","A8325C","G8412-","A8413-","G8414-","A8417T","G8418C","G8427A","C8437A","A8438G","A8446G","A8458G","T8462G","T8470C","C8488A","G8490A","T8511A","G8513A","T8515C","G8516A","C8521T","A8534T","G8537A","T8558A","C8590G","C8651T","C8666A","C8684G","C8705T","T8766C","G8767T","T8770A","C8775T","T8832C","T8843C","A8851T","A8886C","C8911G","-8970G","-8971A","-8972C","-8973T"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S17N, I72V, I101L, G106A, V110I, D167E; RT-p51: S123G, T165I, Q174K, G196D, I202V, R277K, Q278H, M377L, E396D, W410Y, I434L, A435E, A437V; RT-p66: S123G, T165I, Q174K, E177D, G196D, I202V, R277K, Q278H, M377L, E396D, W410Y, I434L, A435E, A437V, I452V, V467I, S468T, S491L, R530K; gp120: T22A, V40I, E59G, N108-, T110-, -112V, N114A, -124A, K127R, L137V, E144A, L156I, D157E, N159G, N160T, -161S, S162E, R164M, S171T, A172T, I173V, S181T, N206S, T208K, D294E, D297N, K307R, -308S, K309N, N311T, E312R, K319E, K322R, E323K, -328R, K329-, K332Q, P335S, T345M, R351K, G361S, -368F, -370G, -372Y, -373M, -381T, -382D, -383N, -384S, -385T, R391K, I396V, E401G, R404Q, S433T, N434E, E436G, T439V, I468V, E472S, A473S, K474R; gp41: A67T, P98Y, S101E, Q108Y, D109N, N129T, N140T, K144N, S154K, N166K, V178I, L191I, E215G, D217G, N239S, A267V, A268T, A281I, I301V, S302D, A312G, E320R, V321A, I322F, Q323C, R324N, I325R, P333-; nef: E24P, A27E, E28-, G29R, A32E, Q35R, K39R, H40Q, L43P, A49D, W57R, L58P, A60V, A83G, C142L, F143Y, Q170L, K182Q, A190G; p17: I7V, G11E, K12Q, D14E, K15R, I61L, K62D, L64I, Q65H, L68I, E106K, E107R, C111S, A119E, K124N, -125T, V128-; p2: A7V, N8-, -10S, -11T, -12N, M14L; p24: A14P, A31G, S33N, P49S, S120G, K154R, T200N, T210S; p6: F15L, P24S, S40A, S47N; p7: P9H, I12A, R29K; pro: S12T, Q61D, L63T, T74A; rev: L22I, H53D, S86D, S99N, S112F, R113G, K115E; tat: N23T, K24E, T40K, P68H, T82A; vif: Y30H, V31R, R33G, K36Q, F39Y, Y44F, S46T, D61E, D78E, S130T, K158Q, G182D, T188I, M189R; vpr: N16Q, E48D; vpu: -2Q, -3A, L4R, -5V, -6R, V7L, V10G, V26A, L33W, V34L, R37H, K38R, D40N, W41C, E58D, T61V, V69-, D70-, M71-, G72-, L77-"}}}]}]}]}]},{"name":"C_NODE_0000009","node_attrs":{"div":0.08019,"clade_membership":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["-281C","C773T","G5257A","T5355A","C5461T","-5600T","-5601A","-5620C","T5728A","C6562T","T6778G","G7366A","G7790A","G7918A","G8152A","C8406A","G8414T"],"gp120":["N160S","-308K","-370S"],"gp41":["D163N"],"p2":["-11N"],"rev":["V102I"],"vif":["V51I"],"vpu":["W41R"]},"labels":{"aa":"gp120: N160S, -308K, -370S; gp41: D163N; p2: -11N; rev: V102I; vif: V51I; vpu: 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A124S, G134D, V165I, D167E, I218T, R269K; RT-p51: T48S, A98S, K102Q, V118L, A173T, E177D, K211R, T215S, T216R, K219Q, H221Q, K249R, D250E, I257L, L264I, C280G, V293I, L310I, A371V, A376V, T386A, K431T; RT-p66: T48S, A98S, K102Q, V118L, A173T, E177D, K211R, T215S, T216R, K219Q, H221Q, K249R, D250E, I257L, L264I, C280G, V293I, L310I, A371V, A376V, T386A, K431T, L469I, L517I; gp120: M3G, K18R, A32G, D50N, N52D, E59G, I80V, S87G, N102T, T104I, -109A, -111I, -112F, -114G, -115S, -122E, -123I, -124D, M126A, N132S, T133M, T135A, L137V, K140S, K141T, K142I, K143N, Y145S, A146S, L147V, F148Y, S160K, N161T, A172T, I173V, I185F, I243V, E247K, T255I, N261K, E262K, V267I, T269I, P271T, N272G, H302Y, S306N, K307E, D309T, K312D, R316E, S318A, K322H, -328S, K329T, T330N, K332R, N334A, S336P, N358D, K361N, S365M, -368L, N369F, S370N, T371D, -372W, -373S, -374Y, -375E, -376H, -377S, -380T, -381D, -382S, -383D, -384F, -385I, T387M, L388I, P389R, K393T, Q394H, E401V, G403R, R404A, A405V, M406L, P410A, 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N80P"}}},{"name":"MF373131","node_attrs":{"div":0.1612,"accession":"MF373131","clade_membership":{"value":"C"},"country":{"value":"SE"},"date":{"value":2005.0},"Strain_name":{"value":"010BI"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["A359T","G363A","C365G","A378C","C379A","G394A","C419T","G480A","T495G","A500T","A516T","A519C","C540A","G542T","C575T","T602C","G603A","A604G","A605G","G615A","C618A","C641T","G671A","A677G","-700A","-714A","C749A","C774T","G818A","G821A","C875T","T884C","T978A","G987T","T988C","A989T","T992G","G1019A","A1025C","T1058C","A1070G","G1077C","C1078A","C1115A","C1118T","A1263T","G1313A","-1452C","-1459A","C1598T","T1646C","C1656A","G1664A","A1725C","-1729T","-1730C","-1731G","-1732G","-1733G","-1734G","T1735A","C1736G","G1737-","A1738-","G1739-","G1740-","A1741-","G1742-","A1746C","C1751T","C1756T","C1761A","C1767A","C1795T","T1853C","T1854A","G1912A","T1987C","A2063C","A2242G","C2266T","C2296T","A2368G","A2398G","G2459C","A2460C","C2464T","C2528T","A2529G","A2530C","C2596T","C2615A","A2734G","T2737C","A2929G","C2975G","C2976T","A2977G","T3002C","C3023T","T3100C","A3103G","C3140T","A3151G","G3154A","A3192G","A3230T","T3253C","C3274T","A3293T","T3346A","G3379A","G3398A","C3399T","C3415T","G3431T","G3439A","T3469A","G3491A","G3523A","A3583G","G3631A","A3675G","A3718G","C3773T","A3816G","G3846A","G3859A","A3880G","T3904C","T3924C","A4060G","A4076C","C4079T","T4276A","A4397T","A4420C","A4427C","T4441A","A4525G","G4561A","T4606C","G4607A","A4625G","C4645A","C4665T","G4695A","G4696A","T4701C","T4703G","A4721T","T4769A","T4800C","G4861A","G4864A","G4870A","A4952G","T4967C","T4976C","A4993C","T5006C","A5026T","T5062A","A5090G","A5173G","C5251A","C5268G","A5275G","A5282C","T5293G","A5302G","C5306A","A5324G","C5358T","G5359T","A5360G","A5453T","T5457C","A5461G","A5462T","G5563A","A5564C","C5579T","T5584C","T5600C","-5602T","T5604G","T5616A","T5618C","A5623T","G5624T","A5644T","G5662A","A5689T","A5728C","G5748A","C5763T","G5775A","-5803A","-5805C","T5843C","C5949G","G5956T","T6024G","T6025C","A6044T","T6076G","A6092G","T6101A","A6113G","A6119C","G6165C","T6166A","-6167A","-6168A","-6169T","-6170G","-6171T","-6172G","-6174C","G6179A","-6180A","T6181G","T6193C","T6196G","-6198C","-6201G","-6204G","-6205G","-6207G","-6209T","-6210C","-6211G","-6212A","-6213G","-6214G","-6215A","-6216T","-6217G","-6219T","-6220G","-6222C","-6223G","-6225G","-6226A","G6232A","A6262G","A6311G","A6330G","G6336A","C6337T","A6339G","T6340C","A6456C","T6457A","A6461G","C6469T","C6487T","C6489A","G6561A","A6568G","G6569C","C6599T","A6602G","A6615T","A6620C","G6638A","T6643A","A6648G","A6669C","A6672G","T6673A","A6683G","C6721T","T6722G","A6723C","T6724C","G6725A","C6729G","G6732A","A6781T","A6785C","T6787G","A6788G","T6793C","T6794C","G6802T","A6805C","G6807A","G6821A","A6822C","-6830G","-6831G","T6835A","A6840T","A6845-","T6846-","A6847-","A6848-","A6850-","A6856C","A6859T","C6895T","T6898C","A6935C","A6947G","C6951T","-6952T","-6953T","-6954T","-6955T","-6956A","-6957A","A6959G","G6963C","T6964A","-6967T","-6968A","-6969A","-6970T","-6972A","-6973T","-6974A","-6975C","-6976T","T7011G","C7016A","C7018T","A7021C","G7026C","A7027T","A7031T","A7033C","C7034A","A7035G","A7036G","T7039A","A7042G","A7043G","G7048A","T7049A","G7054A","G7058A","A7060G","G7061T","A7063G","G7065C","A7070C","T7071C","C7078A","C7082A","C7083T","C7084G","A7090C","G7091C","A7093C","A7095C","A7099T","T7103A","T7105A","A7107C","A7108G","A7113C","T7114A","G7121A","A7126T","A7129T","G7132A","C7134G","A7135G","C7136A","G7137A","T7141G","G7142A","G7143C","A7147T","A7151-","A7154G","T7156G","-7162G","G7168C","C7170T","T7173G","C7174A","G7176C","A7183C","G7184A","G7188A","A7189C","G7190A","T7194G","G7198A","G7199A","C7201T","A7210G","G7212A","T7213A","A7216T","T7220C","T7222G","A7223G","A7224C","A7229G","T7236C","G7238T","A7239C","A7241C","A7244G","A7245G","C7247G","T7250A","G7253A","G7254C","A7261G","C7264G","C7266A","T7267G","A7269G","G7270A","C7272A","A7273T","A7276G","G7279A","G7281C","T7287-","G7288-","G7289-","G7293A","A7296C","A7298G","A7301G","-7307C","G7309A","A7312C","A7315T","G7316C","G7324T","T7325C","T7329G","G7332C","G7333A","T7337G","G7340A","G7343C","C7344T","A7345T","G7346C","A7351G","T7403C","C7436G","T7462C","C7574T","C7579G","G7589A","C7590A","C7625T","A7627C","G7628A","G7657A","T7666A","G7668A","A7672G","A7732G","A7742C","C7771A","A7796G","T7801C","T7852A","T7888C","G7890A","A7937C","C7940T","A7992G","A8006G","T8008G","G8019A","G8032A","C8065T","A8076G","C8080A","C8103T","G8131C","G8137T","T8176C","G8181T","C8183T","A8242G","G8254A","G8267C","A8284G","G8292T","A8297G","A8309G","T8323G","G8330T","A8337T","G8348A","G8398A","G8421A","A8426C","G8427A","A8446G","C8489A","C8491G","A8522G","A8537G","T8558C","G8561A","T8567C","A8584T","C8597T","A8636T","G8654A","A8655G","A8656G","T8676C","G8739A","T8740C","T8745C","A8746T","T8747C","G8794C","C8809A","C8810G","G8814A","G8875A","T8903C","C8915T","C8921T","A8922C","G8924T",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K14R, S24N, M50T, I101L, D167E, I208L, N222K, A278T, R284G; RT-p51: E122P, Q145C, P294V, R358K, K366R, S379C, T400S, A435I; RT-p66: E122P, Q145C, P294V, R358K, K366R, S379C, T400S, A435I, A446S, V466I, N527S; gp120: A32G, E34D, L56I, V57G, N64Y, I80V, L83I, S87G, K89Q, -105N, -106V, -107T, -109K, -111N, -112T, -114K, -115T, -122M, -123T, -124G, M126I, T133I, L137I, I153V, S162D, N201T, K203E, T212N, S236N, E239Q, T250A, K254I, I256L, E262K, E265G, N272T, N273R, K277E, K307R, N311Q, K312E, R316N, S318K, K322E, E323T, N327G, T330N, K332T, P335H, K361Q, N366D, -368F, S370D, -372T, -378N, -379N, -380T, -385T, I386S, L388I, R391T, K393Y, Q394R, I396M, N397D, M398I, W399R, V402M, G403W, R404P, M406P, P410M, G413R, N414T, C417R, K418T, S420T, G423S, T427R, R428N, D429E, G430T, -433E, N435E, E436T, G444R, G445D, D446N, M447R, D449N, S453K, E454D, Y456Q, K457A, K459E, V461A, E462S, I463L, K464G, P465A, L466I, G467T, T471K, K472R, A473D, R476T, V478E, E479K, R480A, K482G; gp41: V2L, G5R, F8L, L9R, G10A, L12V, G13R, A14L, A15P, L45V, L91F, I92M, A96N, Q108Y, D109N, M118I, R122K, K147Q, T165A, R196K, N212H, P213S, D230G, I235V, H258R, A267V, G293V, V322L, R324G, R330L, I332V, I336V, A343S, Q345L; nef: R19K, E24D, A27T, E28D, G29R, Q35R, A50G, Y81F, E98D, K105G, V133T, Y135L, R151T, A156E, E158K, R178K, M194L; p1: H9N; p17: L8F, G10R, T15H, R20K, G49S, S54A, I61L, K62Q, Q69N, E90R, V94I; p2: -10P; p24: L83I, V86S, H87Q, M96I, E98D, A116Q, D128E, T178S; p6: P11L, A12E, -18G, -19E, E20-, E21-, T23P, P26L, Q28K, Q30K, T39I; pro: L19Q, L63P, M89L; rev: K30T, P31L, H53R, S54A, L73F, L78I, E95Q, V97L, S99N, S106P, S112F; tat: Y26F, K29V, E63T, S70P, Q76H; vif: V7A, T20K, H27Y, G37K, F39L, E45D, R92K, R93K, S95N, Q136P, Y147F, R159K, R167S; vpr: T55R, I60L, I63M, L68M, R85L; vpu: L4-, A8-, A19T, I28L, V79A, 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p24: I15L, L83V, V86P, H87Q, E98D, D128E, D180E, V191I, R203K, T210S; p6: S3N, A25T, S30A, R33K, -35P, -36Y, K42R, S51L; p7: V13I, R29K, K41E, E51G; pro: S12T, K14T, V15I, I36M, N37S, Q61H, L63P, I64L; rev: I21T, P67S, A68E, Q95E; tat: L8I, K24N, K29C, T40R, I69V, P81Q, S84P; vif: V31I, R34K, R63K, H73Q, P131H, R167Q, D172N; vpr: N41D, L60I, Q77H, A89S, A93P; vpu: -3K, -5L, -6A, A8G, R37K, K38R, K44N, E56D, 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E25D, F100Y; RT-p51: I434M; RT-p66: I434M, V466I, T477A; gp120: A32T, M56I, E125-, M126-, K127-, N167S, K308R, H324L, -368N, -385T, S453N; gp41: F8L, Q108K, N156D, G221R, A267V, I325F; nef: F85V, F89W, S188H; p17: R43K; p6: A12I; pro: S12T; rev: E10A, R50K, K105Q; tat: P21A; vif: I51L, R167S; vpr: T19A, T55M; vpu: S65L"}},"children":[{"name":"KU319542","node_attrs":{"div":0.14418,"accession":"KU319542","clade_membership":{"value":"C"},"country":{"value":"ET"},"date":{"value":2008.0},"Strain_name":{"value":"ET148"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["A353G","A354G","T355C","A362G","G363A","A369-","A370-","A371-","C379T","A380G","A388G","A410G","C434T","A500T","A520G","A530C","T587C","G612A","G614T","C641T","A666T","A682C","G686A","G695A","T698G","-700A","C701A","-705G","-706C","-707A","T731C","G771T","A774C","T788C","C845T","C872A","A968G","T978A","T983C","G1002A","C1078A","A1079T","T1091C","T1103C","C1115A","C1118T","C1169T","A1217G","G1313A","T1322C","C1331T","A1359T","T1421G","-1455A","-1456A","-1457T","C1460-","A1487G","G1489C","C1492T","T1493A","A1495G","A1497G","G1498A","A1499G","T1511C","C1523A","G1543A","T1547C","C1598T","A1642G","C1656T","A1657G","G1742A","C1750T","G1852A","A2059G","A2131G","T2171C","G2173A","C2199A","C2202A","C2281T","G2293A","C2326T","C2353T","T2365A","A2380C","C2467T","A2473G","C2615A","C2635T","T2644C","C2694A","A2698G","A2699G","C2720T","A2727G","A2773G","G2837A","A2839C","A2920G","A2938G","C2960T","G2972A","A3043G","T3045C","C3095A","A3145G","A3224C","T3225A","T3343C","A3367G","C3380T","A3449G","T3450C","A3481G","T3496G","G3523A","T3530C","G3544A","A3565G","A3651G","G3685A","G3686A","C3688T","A3715G","C3779T","A3787G","A3794C","T3829C","A3931G","T3967C","A3985G","A3989G","C4021A","G4036A","C4058T","A4059C","C4123T","C4141T","T4153G","T4224C","T4428C","A4498G","T4537C","C4667T","T4769A","A4817G","G4887A","G4932A","C4937A","T4973C","C4988T","A5051G","A5059G","C5182T","G5185A","A5247C","T5282C","A5284G","T5292C","T5314A","A5336G","A5355T","G5357A","G5359A","T5424C","A5433C","A5447C","A5467T","C5469T","C5479G","T5483C","C5491T","A5492C","C5513G","T5568C","A5581G","C5599G","-5602A","T5611G","G5630C","C5678T","G5700A","A5720G","G5734A","T5736C","A5742G","C5763T","A5792G","-5800A","-5802C","-5805C","-5807A","G5808T","-5809G","-5810G","-5811G","T5836C","A5867G","C5884G","A5907G","A5918G","T5920C","A5921C","C5974T","A6008G","T6024C","G6029A","A6045G","G6073A","A6118G","G6165A","A6173-","G6179T","C6183A","G6188A","A6197G","-6201A","-6204C","-6205A","-6210T","T6211A","A6212C","-6216C","-6220A","-6221C","A6222T","T6223A","G6224A","-6225G","-6226A","A6234C","A6236C","-6238G","A6263T","A6265G","A6282C","A6283T","G6303A","A6311G","A6327G","-6340T","G6346A","C6394T","C6446T","A6488G","T6490A","G6526A","G6532A","A6544G","G6572-","A6573-","A6574-","T6586C","G6588A","A6649T","G6694A","G6743A","C6752G","A6773G","C6790T","A6806G","C6818A","A6848G","A6849C","A6907G","T6932A","G6947A","-6967A","-6968A","-6969A","-6970C","-6972G","-6973T","-6977T","-6978C","-6979A","-6981A","-6982T","-6983T","C7016A","T7018C","G7056A","A7108C","A7113C","C7117T","C7124A","G7132A","A7152T","A7155C","T7159C","G7166A","A7175T","G7176T","G7197T","G7199A","G7212A","A7225T","T7242A","G7246A","A7261T","C7264T","A7269G","G7270T","A7276G","G7293A","G7295A","G7307A","T7323C","G7333T","G7339A","G7340C","A7373T","A7396G","G7459A","G7502A","C7561A","C7574A","C7596T","T7604A","T7633A","T7642A","G7712A","A7713T","A7733G","G7760A","G7764A","T7765G","A7781T","A7782C","A7790G","A7799C","A7818G","T7894C","A7938G","G7962A","C7969A","G7995A","C8047T","G8079A","A8104G","C8106G","G8158A","G8163A","T8203C","C8213T","A8242G","T8268C","T8279G","C8286G","C8291A","C8293G","C8296T","A8338G","A8342T","A8364T","-8365C","-8367A","-8368G","-8370A","-8372A","-8373G","-8374T","A8378G","G8404A","A8405G","G8458A","G8476C","A8486C","G8490A","C8503A","A8525G","G8529C","G8554A","G8588A","A8653G","C8669T","T8685C","G8729A","A8792C","G8794A","G8888A","A8909G","C8921T"],"INT":["K7Q","I72V","Q95S","V150A","I218T"],"RT-p51":["T35K","A36E","Q174K","A200E","I202V","K211R","E248N","V293I","V317A","H334N","M377Q","E413D"],"RT-p66":["T35K","A36E","Q174K","A200E","I202V","K211R","E248N","V293I","V317A","H334N","M377Q","E413D","I452A","N519S","V531I","S554N"],"gp120":["N5D","K18R","T22A","T23P","N52D","V57A","E59K","N64S","S104N","-105D","-106T","-107Y","-109T","-111N","K143T","R150K","I153V","L156-","D157-","N158-","N159-","S160-","Y163-","R164-","I166N","N212E","E241I","I242V","I243-","R245K","E265D","D297N","Q300E","K307E","S318G","K323E","K332A","S360T","G365S","-373S","-374T","-375S","-376N","-377S","L388I","G401E","K418N","N420T","L424I","T432N","-433I","N434T","N436D","E438K","R441L","R448M","D449N","K457N","I463N","E472S","R480K","E481K"],"gp41":["V2I","V7A","G13R","V24L","A67T","L91I","P98L","S101T","D109E","D113E","D137I","K144E","D153N","S154K","N160S","N163D","N166H","K172R","N212S","G220E","R231K","D232N","R259Q","A268G","R277S","S287N","L304F","V322A","C326G","A328G"],"nef":["-11V","R21K","Q35R","S45T","A50T","A54D","E63Q","R71K","K104R","Y115H","R151K","R182K"],"p1":["K4R","H9C"],"p17":["I7A","G10S","K12-","T15M","K18R","E55D","K62R","Q65H","E93N","S111C","Q116P","A119K","K122E","K124A"],"p24":["A14S","I15L","L83I","V91I","A116N","D1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K7Q, I72V, Q95S, V150A, I218T; RT-p51: T35K, A36E, Q174K, A200E, I202V, K211R, E248N, V293I, V317A, H334N, M377Q, E413D; RT-p66: T35K, A36E, Q174K, A200E, I202V, K211R, E248N, V293I, V317A, H334N, M377Q, E413D, I452A, N519S, V531I, S554N; gp120: N5D, K18R, T22A, T23P, N52D, V57A, E59K, N64S, S104N, -105D, -106T, -107Y, -109T, -111N, K143T, R150K, I153V, L156-, D157-, N158-, N159-, S160-, Y163-, R164-, I166N, N212E, E241I, I242V, I243-, R245K, E265D, D297N, Q300E, K307E, S318G, K323E, K332A, S360T, G365S, -373S, -374T, -375S, -376N, -377S, L388I, G401E, K418N, N420T, L424I, T432N, -433I, N434T, N436D, E438K, R441L, R448M, D449N, K457N, I463N, E472S, R480K, E481K; gp41: V2I, V7A, G13R, V24L, A67T, L91I, P98L, S101T, D109E, D113E, D137I, K144E, D153N, S154K, N160S, N163D, N166H, K172R, N212S, G220E, R231K, D232N, R259Q, A268G, R277S, S287N, L304F, V322A, C326G, A328G; nef: -11V, R21K, Q35R, S45T, A50T, A54D, E63Q, R71K, K104R, Y115H, R151K, R182K; p1: K4R, H9C; p17: I7A, G10S, K12-, T15M, 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N163Y, I164F, W169R, K172M, I173L, V178I, V190E, L191I, V194T, R196K, V197I, R198M, P203T, L204I, N212T, R218G, L219I, G220V, I222V, G226D, E228D, D232S, R233S, S234W, I235M, F241I, L249I, R250L, L252M, S256I, F263V, I266V, V267I, A270T, L273V, G278S, W279R, G293A, L303I, L304I, T306A, I307L, A310T, A328T, R330L; nef: G3N, S9-, I10-, G12-, P14R, E18D, T23S, Q35*, K39R, L43I, A53E, A60E, E98D, L100I, V114M, F120Y, N126C, R151G, N157T, M168I, S169N, E174D, K184Q, E197D, F202Y; p17: R9S, G11-, K12E, T15A, G49D, S54A, Q59R, I61L, Q69P, Y79F, E90K, N109K, K110E, A119T, K122G, K124N; p2: T10N, N11A, -12H; p24: S33N, V36I, V86A, H87Q, M96I, A116T, D187E; p6: I12M, R16K, L38S, K42R; p7: I12T, V13I, I24L, T50N; pro: G16E, I19T, L63S, M89L; rev: S8N, Q14R, I21L, Y28H, K30H, Q36R, A37H, N40S, A47S, I52L, H53D, S54A, E57K, I59N, T62A, P67H, A68P, P70H, P72S, Q74H, R80G, L81R, D84G, C85D, S88D, T91G, T94A, G96E, V97*, G104W, S106P, S112F, A114V, K115E; tat: K19R, A21D, Y26H, K29V, Q39R, T40P, A58P, 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E10A, K14R, S17N, Q136R, I201V, I220L, I268L, K269R; RT-p51: V8I, K101R, H121Y, K166R, A173T, K174Q, E207R, K211R, D250E, A286T, P294S, V317A, P345Q, F346Y, T359A, V365I, M377I, A435I; RT-p66: V8I, K101R, H121Y, K166R, A173T, K174Q, E207R, K211R, D250E, A286T, P294S, V317A, P345Q, F346Y, T359A, V365I, M377I, A435I, L452I, Y483S, S491P, K527G, E529K, V548I, S554N; gp120: G4S, E34D, V57P, N64E, V80I, E102K, C103-, T104-, N108-, T110-, I126M, E136V, I137V, R138E, K140R, Y145H, Y163E, R164K, A191T, N202D, K203N, N212H, K277T, D294E, K307E, -308A, K319E, K332N, S365G, -368M, -370G, -372N, -373S, I388L, I395F, E401G, A412E, K418N, N420I, T427E, N432E, -433T, N435S, E436S, I439T, D449N, K457R, A472T; gp41: A1V, V28A, A50V, K77T, K106I, D109E, E110D, D113N, Q119E, E123Q, D129G, N156K, N160S, L191I, S192A, P216L, R231K, D232T, E272G, S287N, E320I, R324G, R330C; nef: A15N, S45T, A56T, Y81F, E98D, K104R, H116N, V133T, Y135L, C163S, M168L, E174D, E176D, V180I, K182Q, M194L, Y202F; p17: G11K, K18R, K26R, H28R, M30R, T72S, R95Q, K114R, K119-, G123-, -127Q, Y132F; p2: A7-, N8T, -10S, -12T, M14L; p24: I2L, L15I, M96I, S120N, D128E, K154R; p6: S3N, P26L, S47N; p7: R29K; pro: V15I, I36L, N37D, K41R; rev: E10D, A11D, Q14R, E30K, R50N, R80G, G89S, S103P; tat: N24T, Y26H, H29I, S46Y, S57R, A58P, L68P, S70P, R76Q, P81S; vif: R34K, K36N, F39V, E45D, L91M, R93G, S95N, D134E, T151I, K157E, I159R, V166I, N176K, K179R, T180I, G182D, R183H, N186S; vpr: P4A, T49N, I70T; vpu: I2L, S3E, L4I, V26A, R35Q, T61S, H73S, N80I, 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S94R"}}},{"name":"FJ496209","node_attrs":{"div":0.15899999999999997,"accession":"FJ496209","clade_membership":{"value":"C"},"country":{"value":"ZM"},"date":{"value":2003.0},"Strain_name":{"value":"ZM249M_flC1"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["C152-","G157A","T159G","-160T","T200C","G216A","A354G","A362C","T377C","A378T","A393C","C417A","T419A","T424G","C435A","C456A","G481A","C482G","A492T","A507C","A508T","A509G","A515T","A516C","C525A","C537A","G554A","G562A","C572T","C575T","A603C","A605G","G606A","G615A","C618A","C623T","G654A","A655T","C672A","A678G","-695T","C697A","-699C","-701A","G740A","C767T","T771C","G791A","G815A","T827C","A869T","A932G","G956A","T1003A","A1022G","A1025G","A1079C","G1109A","T1136C","G1139A","G1142A","T1172A","A1192G","G1199A","G1205A","C1229T","C1230A","T1271G","C1304T","A1367G","A1404G","A1418G","C1444T","A1464C","A1503G","C1517T","C1535T","G1568A","C1656A","G1673A","C1679T","T1682C","C1755T","G1852A","T1986G","A2023G","T2035C","C2087T","G2117A","C2149G","G2210A","A2211G","A2227G","A2242G","T2257C","T2263C","G2293A","T2353C","A2419G","G2422A","G2462A","T2533C","G2548A","C2575T","A2593G","A2611G","C2615A","T2668A","T2719C","A2727G","G2728A","G2752A","A2755G","A2764G","A2773G","T2791C","C2831T","G2837A","T2845G","G2914A","G2925A","T2932G","C2953T","A3020G","T3068C","T3097G","C3100T","C3133T","A3148G","A3202T","A3208G","A3229G","G3334A","T3346C","G3398T","C3399T","T3497G","A3529G","C3545A","C3577T","A3667G","G3756A","C3763T","G3766A","C3826T","T3856C","A3871G","G3896A","C4024T","C4072T","A4189G","A4264G","T4381C","A4495G","G4549A","C4569T","T4799G","A4865G","C4883T","T4910C","G4981A","A5021G","C5027T","T5028C","G5030A","C5114A","A5155G","A5159G","G5246A","A5248C","G5257A","T5275C","C5303T","C5333T","T5354C","T5355C","A5366G","G5370A","C5393A","C5397T","G5403C","A5446C","C5547T","G5548A","C5579T","A5615G","T5616C","G5643A","A5655G","T5684C","G5707T","T5789C","A5806C","G5822A","T5836C","T5850A","G5858-","T5859-","G5860-","T5862-","G5863-","C5884T","T5920C","G6023A","C6067T","G6165A","A6166T","A6167-","A6168-","T6169-","A6173-","-6180T","C6183A","A6185G","T6191C","T6196C","-6201C","-6203T","-6204A","-6205C","-6207A","-6208C","-6209A","-6210A","-6211T","-6212A","-6213C","-6214A","-6218G","-6219A","-6220G","-6221G","-6222G","-6223T","G6227C","C6252T","C6256T","A6262G","G6303A","T6310C","G6314T","A6329G","-6333G","A6338G","-6340G","T6436C","C6477A","C6487T","A6505G","G6519A","T6559C","C6563T","G6572A","A6595G","C6599A","G6601A","C6612T","C6618T","C6632T","A6646G","G6653A","T6654A","G6655C","A6662C","C6670T","A6734G","T6735A","C6745A","C6752G","T6778A","A6798T","A6801G","G6808T","A6819G","A6820G","T6824C","C6829T","A6836G","A6837G","A6842G","A6854G","C6862T","C6895T","A6913G","A6927C","A6934G","-6956A","-6957A","A6959C","A6960C","-6986A","-6988T","-6989G","-6991C","-6993C","-6994A","-6995G","C6996A","-6998A","-7000T","G7002A","A7010C","C7019A","G7026A","A7036G","C7078T","T7081C","C7089A","A7095G","A7108C","A7113C","C7117T","C7124T","A7126G","-7147C","A7149G","T7150C","-7152A","-7153A","T7159C","A7161C","-7162A","A7163G","C7164A","A7183G","G7197A","T7228C","T7243C","T7250C","A7261G","A7315G","C7328T","T7330G","C7429T","T7516C","C7589T","A7621G","A7629C","T7633A","C7645T","C7684T","G7688C","A7720G","A7722G","A7735G","T7751C","C7755A","T7765C","C7825T","C7843G","T7876A","A7903G","T7912A","G7918T","C7926T","T8016C","C8044A","G8055A","C8069T","A8119G","G8126A","G8180A","A8195G","C8210T","T8215G","G8216A","T8277G","A8297G","T8302C","G8304C","C8320T","T8323A","G8327A","C8328G","A8402C","C8440T","A8441G","A8453G","A8458G","A8461T","C8469G","T8471C","C8483T","C8489A","A8494C","T8505G","G8506T","G8513T","C8517G","A8534G","A8537G","C8543A","G8564A","T8568C","G8589T","A8594G","T8595G","T8640C","A8643G","C8666T","C8669T","T8676C","T8711C","G8729A","G8739A","C8741T","A8742C","T8747C","C8751T","A8762G","C8775T","T8786G","C8789T","A8801G","C8813T","A8826T","A8827T","C8828A","T8829A","T8831C","C8835T","A8847T","G8861A","T8867C","G8868A","A8869C","C8873G","C8882G","T8883C","A8885G","A8887T","G8888A","A8904C","G8905A","C8921T","C8934A","T8948C","T9039C","C9040T","A9041G","T9051A","C9078T","A9095T"],"INT":["D41N","A265V"],"RT-p51":["V8I","E39R","D123N","Q174K","K211R","E248K","D250E","I309V","H334Q","A435L"],"RT-p66":["V8I","E39R","D123N","Q174K","K211R","E248K","D250E","R277K","I309V","H334Q","A435L","L452I","S468A","L484I","S554N"],"gp120":["V2G","V3N","G4-","N5-","T104-","-109N","T110V","-111N","-112V","-113T","-114H","-115N","-116S","-117T","-118Y","-119N","-120N","-121T","-122E","-123G","-124E","E125Q","T133I","R150K","V154L","D157N","N159D","N160S","S162E","T208K","G222E","E240K","L249I","A253V","T255I","V267N","D294E","D297K","Q300E","-308E","Q315L","K322R","Y324H","N327G","T330A","N358T","-368N","T371N","-372N","-375E","-385T","I386L","P389T","R391K","A412E","N414S","K418N","N420T","N432S","-433K","R448K"],"gp41":["S101T","Q108K","D109A","K129Q","N140S","A151E","T2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D41N, A265V; RT-p51: V8I, E39R, D123N, Q174K, K211R, E248K, D250E, I309V, H334Q, A435L; RT-p66: V8I, E39R, D123N, Q174K, K211R, E248K, D250E, R277K, I309V, H334Q, A435L, L452I, S468A, L484I, S554N; gp120: V2G, V3N, G4-, N5-, T104-, -109N, T110V, -111N, -112V, -113T, -114H, -115N, -116S, -117T, -118Y, -119N, -120N, -121T, -122E, -123G, -124E, E125Q, T133I, R150K, V154L, D157N, N159D, N160S, S162E, T208K, G222E, E240K, L249I, A253V, T255I, V267N, D294E, D297K, Q300E, -308E, Q315L, K322R, Y324H, N327G, T330A, N358T, -368N, T371N, -372N, -375E, -385T, I386L, P389T, R391K, A412E, N414S, K418N, N420T, N432S, -433K, R448K; gp41: S101T, Q108K, D109A, K129Q, N140S, A151E, T208I, V238A, D247E, S251N, L256F, G275R, G293S, K298E, D305N, A325G, I332V, R334T, F340L, A342R; nef: A33V, K39R, Y40F, L43V, N51T, C55V, W57C, Q59E, A83S, F85V, I101V, Y120F, V133I, N162L, C163S, S169C, M173I, E176T, D177E, K182I, S188H, L198I; p1: H9N; p17: I7V, R9S, T15S, H28K, M30R, L34I, L41M, G49E, T53S, K58L, I61L, L64I, L68I, R76K, K90Q, G91R, V94I, Q95K, E107I, Q113K, T115A, K119E, A121D, E122Q; p2: A7V, M14L; p24: S14P, V91N, K154R, D180E, S225G; p6: P26S; p7: I13V; pro: V63G; rev: A11V, Q74L, T91A, T92A, G93E, E95D, G111E, K116R; tat: P6H, E9D, K24Q, A58T, P73S; vif: K36N, R132K, N176K, N190S; vpr: P4T, T19A, E48N, A89T; vpu: -7S, -8L, -10E, I21V, V26A, V34L, E58D, G72E, 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K34R, V112I, A124N, T206S, I234L, M275V, A278S; RT-p51: T27S, K35I, K103N, D123S, E138K, T139A, A173T, Y181C, I202V, E207D, E248S, I274V, Q278N, K281R, H334N, A360T, M377Q, I434M; RT-p66: T27S, K35I, K103N, D123S, E138K, T139A, A173T, Y181C, I202V, E207D, E248S, I274V, Q278N, K281R, H334N, A360T, M377Q, I434M, L452A, K454R, K476Q, Q480K, Q524L, I526V, K527Q, E529D; gp120: V3M, N5S, K18Q, E19D, A32G, M56L, E59G, D105T, -106E, -107N, N108E, -109D, -111T, -112T, -113I, -114N, -115S, -116T, -117G, -118N, -119Y, -120S, -121I, -122A, -123R, G124E, I126M, K127R, K141Q, Q142K, R150K, V153T, N159K, -161S, A172T, T174S, V180I, Y195F, N212Q, A238S, E240K, L249I, S263Y, E265K, V267T, N272G, K277Q, D294A, -308Q, K309D, K312R, Q315Y, G318T, -328T, K329-, I343V, K361G, -372A, S373Y, -375N, -376T, -377G, -378N, -379N, -380T, -381E, -383S, -384K, -385N, I392L, N414H, K418V, T427V, N432I, N435K, T436S, T437K, I439T, K474H; gp41: V69I, L81F, G83S, I84L, S96N, Q108K, T109E, E110Y, R122K, D129G, T130I, R133S, N140I, K144Q, S154R, S163G, K166N, T210I, R214G, L219P, R221G, R231K, R233K, A245F, H258R, R276Q, K298R, L304F, T306A, I307T, V321L, Q323L, I325G, I332V, A342T; nef: S9C, I20L, T23A, G29A, K39R, Y40H, A50H, A53E, A83G, F85I, R151G, A156D, R192I, L194V, E197Q, Y202F; p2: T10-, N11A, -12H; p24: N183K; p6: S3N, T8S, -18G, -19E, E20-, E21-, P26Q, P30S, K31Q, R33-, E34-, P37-, T39I; p7: S4G, P9G, R10P, R11K, I12R, I24L; pro: I19V, T63P; rev: S8P, I18T, E32R, K39R, S54Q, C63V, I78L, T94A, Q95E, V102I, S106P, K115*; tat: E2D, N12K, K24N, T40R, Q54P, P60S, N67D, K71E, P75S, S84P; vif: V7A, R19K, R33K, G37K, R41K, H48N, P58S, R63K, R93S, G101D, M109I, P131H, Q136P, N140S, K157R, K158R, I159R, K176E, T180I; vpr: Q3R, L22I, H40Y, R85P, A93S; vpu: -2I, -3E, L4W, -5L, -7G, V10A, I18L, T24I, L33I, R35K, K44E, R47E, T61I, H73R, V79N, N80I, D81-, L82-"}}},{"name":"AF443101","node_attrs":{"div":0.14986,"accession":"AF443101","clade_membership":{"value":"C"},"country":{"value":"BW"},"date":{"value":2000.0},"Strain_name":{"value":"00BW192113"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["G216A","G224A","A227T","A278G","-280G","-305A","A379C","G438A","G444A","-473A","G481A","A519C","-527T","-614A","-695G","-699G","-700C","-701C","-705A","-706A","-707A","C774A","G791A","A797G","G815A","G818A","T858C","A920G","G959A","T974C","G1002A","-1004A","-1017T","A1022G","G1090A","A1101G","T1136C","G1139A","G1142A","T1172C","T1182C","G1205A","C1230A","G1232A","C1235T","-1260T","-1263T","A1265G","A1268G","-1271A","A1274G","T1420C","-1452A","G1474A","A1503G","C1556T","G1562A","C1706T","A1840G","A1882G","T1957C","T1996A","A2018G","A2026G","A2059G","C2080T","A2086C","A2203G","A2260T","T2263C","G2273A","A2287G","C2296T","A2327G","T2335C","T2365C","A2455G","T2527C","C2575T","A2626T","A2727G","A2818G","T2824C","C2828A","A2829T","G2830T","A2840C","T2845A","C2890T","C2908T","C2909G","A2923G","G2926A","C2930T","T2932G","C2941T","G2947A","G2950A","C2953T","C2968T","A2980G","T2996C","A3046T","C3067A","T3097A","A3107T","G3142A","G3151A","A3170T","G3205A","A3217G","C3223T","G3340A","G3382A","G3385A","A3388G","C3399T","T3412C","A3427G","G3439A","A3449C","T3469C","C3475T","G3477A","G3484A","T3497A","T3541A","A3619G","G3631A","C3665G","G3808A","G3850A","T3856C","A4003C","G4036A","T4165C","A4225G","C4258T","A4264G","C4396T","A4402G","A4432C","T4441A","T4537C","A4544G","A4573G","G4623A","C4667T","T4706C","A4737G","G4859A","G4870A","C4871A","C4937A","A4950C","C5019T","T5072A","A5085C","C5182T","C5203T","C5213A","G5226A","G5246C","G5257A","T5281C","A5282C","T5304C","T5355A","T5356C","G5357T","A5362C","G5363A","C5397A","T5415C","A5433C","A5444C","T5445C","A5446C","A5447C","T5451C","G5581C","-5602A","A5611T","T5616C","A5620G","T5621C","G5626A","G5629A","G5630C","T5645C","G5647A","A5652C","C5653T","A5656T","T5684C","A5689C","T5704C","A5712G","T5728A","T5789C","A5793G","A5797T","T5801C","-5802A","A5804C","-5805A","-5815G","-5816A","-5817T","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","-5824C","-5825A","-5826G","-5827C","-5828T","-5829T","T5840G","T5843-","G5845C","A5849G","T5850C","T5941C","A5958C","C6010T","T6024C","T6101C","A6167G","-6171C","-6175G","A6177G","G6179A","A6182G","A6185-","T6187-","A6194G","T6196A","A6197G","-6201A","-6203A","-6205G","-6207C","-6208T","A6276G","A6281C","A6311G","C6318A","T6322G","A6329-","A6330-","A6332-","C6334-","A6338G","-6340G","C6394T","T6395A","T6397A","T6490C","T6551C","C6562T","T6624C","C6632T","T6634G","G6638C","T6641G","T6654A","C6670T","T6747C","A6767G","A6774C","A6777G","A6780C","A6812G","A6819G","G6821A","T6824C","G6894C","C6895T","A6935C","T6943C","A6959G","-6965T","-6966A","-6967C","-6968A","-6971G","-6972G","-6975C","-6976A","-6977G","-6978A","-6980A","-6982T","-6993A","-6994T","-6995T","-6998G","-6999G","-7000T","G7002A","-7004T","A7005C","-7009T","A7056G","A7135G","T7138G","A7147G","T7150A","A7151G","-7153G","A7157G","G7160A","A7161C","A7163G","G7182A","G7197A","G7199A","G7234A","A7245G","A7256G","G7268A","G7270A","G7307-","T7308-","G7309-","G7311C","T7411A","G7440A","A7441G","A7463C","T7537C","C7544A","A7589T","T7618C","A7626T","G7628A","A7629C","T7633A","C7684T","C7690A","C7699T","A7714C","A7735G","A7744G","C7771T","T7783C","G7790A","G7831A","G7835A","A7840G","G7846A","A7855G","T7879C","G7942C","G7947A","A7998G","C8005A","G8030C","C8044A","C8051A","C8092A","A8099G","T8101G","G8113A","G8185A","G8234A","T8235C","G8254A","A8284G","C8286T","G8304C","T8337A","A8342G","T8366C","A8402G","G8407A","G8414A","A8441T","A8446G","C8488T","G8490A","A8494C","G8501C","A8522G","G8529A","A8536G","A8537G","C8702T","G8774A","T8786G","G8794A","A8816G","G8844T","T8855A","C8882A","C8906A","A8918G","C8930T","C8934A","T8935A","T8947G","T8948G","A9012T","-9029A","T9115C","A9135G"],"INT":["A124T","K219N","N222K","I257V","G283D"],"RT-p51":["V60I","R78G","E177D","K211R","Q245I","K249Q","D250E","P272A","D324E","H334Q","T338S","R357K","T359S","A435V"],"RT-p66":["V60I","R78G","E177D","K211R","Q245I","K249Q","D250E","P272A","D324E","H334Q","T338S","R357K","T359S","A435V","R461K","S468T","Q524E"],"gp120":["K35T","V57A","N102K","-106A","-107K","-109R","K141R","K143Q","P155Q","D157N","N159S","N160E","S162-","S181T","I257T","E262Q","S263A","V267E","D297N","I298T","I305V","E307A","-308G","K309A","K320E","K322R","E323K","Y324H","S347T","K361Q","-368N","T371G","-372N","N374T","E401G","N432K","S433G","N435D","T437A","G443E","R448K","D449N","K464R","I468V","E472K"],"gp41":["V2A","G3L","I4-","R46K","M54L","L81I","Q108L","D129E","E137D","M176I","V178I","G215E","D232G","A243P","A245V","D247E","F263L","I266V","R277S","V311T","A328V","R334T","L345Q"],"nef":["I20M","R22K","Q35R","A49V","A50T","N51T","E63K","E65G","R151K","A168L","H171Q","H188Q","L198K","Y202W"],"p17":["K15T","V35I","A37T","G49D","K62Q","K119E","E122A"],"p24":["L15I","V91I","M96L","S120N","I124V","A177S","T178S","D180E","V230A"],"p7":["R3K","I13V"],"pro":["T74A"],"rev":["S8N","E32Q","H53N","S61T","A68E","H82N","D84G","C85G","G89S","G113R","T114A"],"tat":["N7K","K19N","N23T","K24P","V69L","Q78P","D80N"],"vif":["V13I","S36N","I51V","S95K","D117E","K122Q","R167Q"],"vpr":["P37T","S41N","E48Q","I60L","L67P","L84T","R85L","Q86P"],"vpu":["-2L","-3D","-5A","I6A","-7I","V13A","V14I","I17F","V26A","I28L","W41R","V69-","D70-","M71-","G72-","H73-","L74-","R75-","L76-","L77-","D78-","N80D","D81M"]},"labels":{"aa":"INT: A124T, K219N, N222K, I257V, G283D; RT-p51: V60I, R78G, E177D, K211R, Q245I, K249Q, D250E, P272A, D324E, H334Q, T338S, R357K, T359S, A435V; RT-p66: V60I, R78G, E177D, K211R, Q245I, K249Q, D250E, P272A, D324E, H334Q, T338S, R357K, T359S, A435V, R461K, S468T, Q524E; gp120: K35T, V57A, N102K, -106A, -107K, -109R, K141R, K143Q, P155Q, D157N, N159S, N160E, S162-, S181T, I257T, E262Q, S263A, V267E, D297N, I298T, I305V, E307A, -308G, K309A, K320E, K322R, E323K, Y324H, S347T, K361Q, -368N, T371G, -372N, N374T, E401G, N432K, S433G, N435D, T437A, G443E, R448K, D449N, K464R, I468V, E472K; gp41: V2A, G3L, I4-, R46K, M54L, L81I, Q108L, D129E, E137D, M176I, V178I, G215E, D232G, A243P, A245V, D247E, F263L, I266V, R277S, V311T, A328V, R334T, L345Q; nef: I20M, R22K, Q35R, A49V, A50T, N51T, E63K, E65G, R151K, A168L, H171Q, H188Q, L198K, Y202W; p17: K15T, V35I, A37T, G49D, K62Q, K119E, E122A; p24: L15I, V91I, M96L, S120N, I124V, A177S, T178S, D180E, V230A; p7: R3K, I13V; pro: T74A; rev: S8N, E32Q, H53N, S61T, A68E, H82N, D84G, C85G, G89S, G113R, T114A; tat: N7K, K19N, N23T, K24P, V69L, Q78P, D80N; vif: V13I, S36N, I51V, S95K, D117E, K122Q, R167Q; vpr: P37T, S41N, E48Q, I60L, L67P, L84T, R85L, Q86P; vpu: -2L, -3D, -5A, I6A, -7I, V13A, V14I, I17F, V26A, I28L, W41R, V69-, D70-, M71-, G72-, H73-, L74-, R75-, L76-, L77-, D78-, N80D, D81M"}}}]}]}]}]}]},{"name":"C_NODE_0000031","node_attrs":{"div":0.08626999999999999,"clade_membership":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["A73-","A74-","T75-","A76-","A77-","A78-","G79-","C80-","T81-","T82-","G83-","C84-","C85-","T86-","T87-","G88-","A89-","G90-","T91-","G367A","G702-","G703-","A704-","A3817G","T4074A","T5062G","C5168A","T5684C","G6165C","G6179A","-6209A","T6285A","G6368A","G7190A","G7677A","A8372-","A8892C","T8903C","T8947A","T9132C"],"INT":["F100Y"],"RT-p51":["H334Q"],"RT-p66":["H334Q"],"gp120":["V144E","A172T","T371-","D446N"],"gp41":["S125N"],"nef":["K184Q"],"p17":["G11E"],"vif":["I159R"],"vpr":["L22I"]},"labels":{"aa":"INT: 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E25D, I84V, K156N, R187K, D253E; RT-p51: E39D, L234P, Q245K, D324E, R358K, T359A, I434M; RT-p66: E39D, L234P, Q245K, D324E, R358K, T359A, S554K; gp120: -3G, -4E, K18R, T22A, Q54L, Q86E, N102S, -106V, -107N, -109K, -110D, -111N, -112T, N113T, -114C, R138K, Q142N, R150K, N159-, S162-, V173A, T174A, S181N, Y195C, H212Q, S236G, L249M, L260F, N261K, E265T, V267N, N272S, I279V, I281L, K307N, -308K, K312R, R316E, K322A, H324Y, -328R, K329-, K332N, -368Y, -370S, -371T, L388I, P389Q, K393R, I395F, E401K, R404K, K418E, N432P, N436A, T437A; gp41: V7L, I24L, R46Q, Q66R, K77R, L91F, Q108E, E110Y, D113G, R122K, N125E, N140I, A151E, D163S, N166H, T210I, L219P, G220R, Q229P, I235V, F263C, A267V, A270V, V271L, F321Y, R327N, I329F, P333H, R334-; nef: K4N, R10A, -12G, A15N, E24R, G29R, G31Q, A32-, A33-, S34-, Q35-, D36-, L37-, D38-, K39-, H40-, G41-, T48-, A49-, A50-, T51-, N52-, A53-, D54-, C55-, A56-, W57-, L58-, Q59-, A60-, Q61-, H116N, R151E, N162K, S169H; p1: H9Q; p17: K15N, K18R, M30R, I61M, Q62V, K69R, L85I, N109K, K114N, A119K, D121A, E122N, K123E, -124K, Y132F; p2: A7T, N8Q, S9H, -10N; p24: H87Q, K154R, F161-; p6: S3N, F17S, R33K, S40A, K42R; p7: K33E, E51N; pro: V63L; rev: E32K, R38Q, H53R, S54E, I78L, G89A, V102I; tat: N7S, Y26F, H29R, T40K, I69V, P75S, R78Q, S84P; vif: I31T, R33K, G37N, F39V, K67T, T74P, R93K, I124L, N176K, P177S, H187L; vpr: P4V, H40N, S41N, G43N, Q44-, Y45-, I46-, Y47-, T49I; vpu: -3N, V14A, I18L, V22A, S65A, G72D, H73M, L74G, R75N, L77R, D78L, V79L, N80D, L82I"}}},{"name":"MF109607","node_attrs":{"div":0.15163,"accession":"MF109607","clade_membership":{"value":"C"},"country":{"value":"GB"},"date":{"value":2014.0},"Strain_name":{"value":"14727_1_42.3"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["C365G","A367G","C417T","T419C","C435A","G452A","A508G","A512G","A516T","A540G","A606G","A607G","G686A","A691C","A692G","A700G","G716A","T777A","G815A","T824C","G836A","T974C","G1031A","G1139A","C1220T","C1229T","G1232A","C1292A","G1313A","G1328A","G1339A","A1346G","A1349G","G1354C","G1355A","A1359T","A1450G","A1458-","C1460A","G1469A","T1481C","G1562A","C1610A","G1619A","G1622A","G1640A","T1646C","C1693-","A1694-","G1695-","A1696-","G1697-","C1698-","C1699-","A1701-","C1702-","A1703-","G1704-","C1705-","C1706-","C1707-","C1708-","A1709-","C1710-","C1711-","A1712-","G1713-","C1714-","A1715-","G1716-","A1717-","G1720T","G1726A","C1751T","G1760A","G1779-","A1780-","-1786A","-1787A","G1846A","C1849T","G1852A","G1912A","A1921G","T1987C","A2059G","A2063T","A2140G","G2221A","A2286G","G2290A","C2353T","G2413T","G2470A","A2482C","A2509G","A2512T","G2578A","A2592G","C2605T","A2611G","G2704A","A2715G","C2828G","C2831T","G2869A","C2890T","C2909G","A2925G","C2927T","A2928G","A2929C","A2962G","G3010A","T3097A","T3112C","A3130T","A3136G","G3166A","T3172A","G3173A","A3190G","T3197C","G3205A","G3250A","T3253C","A3280G","A3283G","T3349C","C3380T","G3385A","A3388G","A3442T","G3487A","G3494A","C3500G","A3592T","T3602C","T3644A","C3652T","G3684A","G3685A","C3688A","C3691T","T3721A","G3796A","C3826T","G3850A","T3853C","T3856C","C3865T","A3901G","T3904C","T3909A","G3925A","A3955C","C4042T","A4051G","T4085C","G4131C","G4145A","C4181A","T4240C","A4420G","T4428C","A4495G","A4498T","G4583C","G4623A","T4640C","T4715C","C4724T","G4737A","C4757T","G4765A","A4769T","G4774A","A4787G","C4841T","C4937A","A4950C","A4958T","C4988A","T5006C","T5043C","A5058C","A5113G","A5119G","T5209C","A5215C","T5237C","C5275T","T5356C","G5363A","G5370A","G5386A","G5403A","A5448T","C5463T","C5479T","G5538A","G5543-","A5544-","A5556T","A5576C","A5594G","-5600G","-5601T","-5602A","A5607-","A5608-","T5609-","G5610-","T5612-","A5614-","A5615-","T5617-","A5623G","G5624C","A5625G","A5628G","A5656G","A5664T","A5668T","T5704C","A5720G","G5775A","G5784T","G5791T","G5808-","-5811G","T5817A","G5856A","G5861A","G5863A","G5864-","A5866-","T5871C","C5884A","T5980C","C6145T","A6158G","C6160A","T6163C","A6176-","A6177-","T6178-","A6182-","T6184-","A6185-","T6187-","A6188-","A6192T","-6198G","-6201A","-6202T","-6203G","-6205G","-6207C","-6208T","-6210A","-6225A","A6226G","A6232G","A6276G","A6279G","C6280A","G6323-","A6324-","T6325-","A6330-","A6332-","A6335-","A6338-","T6343C","T6385C","A6388G","T6424C","G6425A","T6436G","G6451A","C6469T","C6499T","A6535G","A6553G","C6563A","G6572A","T6598C","A6605G","G6611A","C6612T","A6668G","G6669C","G6725A","C6729A","A6730T","G6732A","C6752A","C6758T","T6763C","A6764T","A6765T","G6771A","A6773G","A6777G","G6779C","A6780T","A6788G","A6799C","A6800C","G6806A","G6818A","-6830C","-6831C","-6832A","C6833A","C6834A","A6836-","A6837-","T6838-","A6854C","A6856G","T6863-","C6864-","T6892C","C6895T","C6925T","A6947-","G6948-","T6949-","A6950-","C6951-","A7007-","G7076A","C7077A","C7124A","A7144T","A7155-","G7182C","A7216G","A7231G","A7306-","G7309A","C7344T","T7386C","C7400G","G7477A","G7517A","A7532C","T7588C","G7589T","A7626T","G7628A","G7640-","T7666G","A7689G","C7692T","A7700C","G7701A","A7713T","A7753G","A7771G","A7773G","T7801G","G7818A","G7846A","G7883A","T7913C","G7997A","A7998G","T8016C","A8029G","G8030T","C8037T","C8038G","C8047T","G8050A","T8060A","G8079A","C8112G","A8128G","C8183T","A8284G","A8297C","G8304C","-8369C","-8373A","-8374A","-8375A","G8376A","A8402G","A8403G","G8404A","G8407-","A8408-","C8410-","T8411-","G8414-","C8415-","C8416-","A8417-","G8418-","C8419-","A8420-","G8421-","C8422-","A8458G","G8516A","G8517C","A8531-","G8532-","C8543T","A8591C","C8603A","A8636T","T8645C","A8652C","T8690C","A8729G","T8770A","A8823G","A8844C","A8858G","G8861A","G8868A","G8882A","T8883C","G8945A","A8952-","A8953-","A8954-","G8955-","A8956-","C8957-","T8958-","G8959-","T8961-","G8962-","A8963-","A8965-","A8967-","G8968-","A8969-","A8980-","G8981-","G8982-","G8983-","A8984-","C8985-","T8986-","T8987-","T8988-","C8989-","C8990-","G8991-","C8992-","T8993-","G8994-","G8995-","G8996-","A8998-","C8999-","T9000-","T9001-","T9002-","C9003-","C9004-","A9005-","C9006-","G9008-","G9010-","G9011-","C9012-","G9013-","T9014-","G9015-","G9016-","T9017-","C9018-","T9019-","G9020-","G9021-","G9022-","C9023-","G9024-","G9025-","G9026-","A9027-","C9028-","T9029-","G9030-","G9031-","G9032-","A9034-","G9035-","T9036-","G9037-","G9038-","T9039-","C9040-","A9041-","A9042-","C9043-","C9044-","C9045-","T9046-","C9047-","A9048-","G9049-","A9050-","T9051-","G9052-","C9053-","T9054-","G9055-","C9056-","A9057-","T9058-","A9059-","T9060-","A9061-","A9062-","G9063-","C9064-","A9065-","G9066-","C9067-","T9068-","G90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D70E"}}}]}]}]}]},{"name":"C_NODE_0000036","node_attrs":{"div":0.08810999999999998,"clade_membership":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["-1459A","A2032G","T4537C","T5237C","-5620C","G5707T","-6331C","-6333C","A6338G","C6758T","-7009C","G7589A","G7995A","G9030A","-9033G"],"RT-p66":["V466I"],"gp120":["-161S","H302Y"],"gp41":["A96N","E110D","R231K","Q345L"],"nef":["Y120F"],"p17":["E122D"],"tat":["L68P"],"vif":["K36S"],"vpr":["Y45H"],"vpu":["V34L"]},"labels":{"aa":"RT-p66: V466I; gp120: -161S, H302Y; gp41: A96N, E110D, R231K, Q345L; nef: Y120F; p17: E122D; tat: L68P; vif: K36S; vpr: Y45H; vpu: 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I31V, I72V, Y100Q, V165I, I201L, A205T, A265V; RT-p51: A36E, T48S, D123G, I135K, I142V, S162Y, A173T, I178M, A200T, E207K, E248D, D250E, A288T, P294T, E297A, R358K, T359N, S379G, A435M; RT-p66: A36E, T48S, D123G, I135K, I142V, S162Y, A173T, I178M, A200T, E207K, E248D, D250E, R277K, A288T, P294T, E297A, R358K, T359N, S379G, A435M, K454N, T470S, T477A, D488E, S491P, K527N, V531I; gp120: N5Q, D29N, E59G, Q86E, N102I, N108-, T110-, -112V, -114H, -115S, -116S, -117T, -118R, -119E, F131Y, A133S, R138W, L156I, D157N, N160A, T174K, S181T, D183E, K203Q, N206D, N212T, R245S, T255I, N261K, E262D, S263P, E265R, S306D, -308G, K309A, K322Q, N327G, S365N, -368Y, -370G, -371T, -372G, -378N, -379A, -380N, -381S, -382T, -383H, -384E, -385N, N397R, E401K, R404Q, K418T, T427V, N432E, -433A, T437I, N446D, K464Q; gp41: V7M, I24M, T25A, A30S, Q66R, L70V, I72L, K77Q, K106R, Q108A, D110-, M115L, D121E, R122K, R133Q, D137E, N140I, K147Q, D153N, N156D, N157S, D163S, N166K, V178I, G220E, E225G, A245I, V271A, S287N, I301V, R324A, C326G, R334T; nef: G3N, S8C, S9-, I10-, V11-, R22Q, A27E, E28G, G29-, A32P, D38A, A49V, R151A, E152D, A156S, N157S, S169N, M173T, K182Q, S188L, A190G, L198K, Y203F; p17: K26R, H28R, M30R, L31I, Q69K, S111C; p2: N9S, -10N; p24: A116N, S120A, V191I, S225G; p6: L1F, S3N, A12V, F15S, F17P, -18G, -19F, E20K, K27R, P30T, K31R, T39I, S47N; p7: S4G, T50S; pro: I19T, E35D, K43R; rev: V16A, R17K, I18A, R50G, C63Y, A68T, L73F, S99G, K115E; tat: N12K, K19Q, A21P, K24S, D64G, P81Q, E85K; vif: N22H, Y30H, V31I, R34K, K67T, R92K, I130F, R183H, G185E; vpr: S41N, E48A, I60L, I63M, Q77H, L84M; vpu: M1K, -2F, -3A, -4I, -5Q, 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p7: S9A, I12T, T50I; pro: L63H; rev: E10A, I21L, R50K, T62A, R66G, S88N, P100S, V102I, C107Y, A108T; tat: P3L, N7K, K19E, H29R, E63T, N67T, L68P; vif: V51I; vpr: Q28R, N41S, V57A, I61M, L84W, S94G; vpu: -2L, -3N, -4L, -5L, -8A, -9R, -10V, I24T, A65S"}}}]}]},{"name":"C_NODE_0000045","node_attrs":{"div":0.10273999999999998,"clade_membership":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["C152T","T1491C","C3095A","C3504G","C5221T","T5843A","G5848A","C6115T","G6121A","-6225A","G6328T","A6605G","A6669G","A6716G","C6729A","A6733C","A6789C","A6854G","T6932A","-6948A","A7995G","G8152A","C8386A","G8780A"],"RT-p51":["Q334N"],"RT-p66":["Q334N","T470S"],"gp120":["N251D","E293N","K312A","S360T","S365N","N369-"],"gp41":["K231R"],"nef":["A15D","M194L"],"p17":["D122-"],"p7":["S9P"],"rev":["V102I"],"vpu":["V79D","D81N"]},"labels":{"aa":"RT-p51: Q334N; RT-p66: Q334N, T470S; gp120: N251D, E293N, K312A, S360T, S365N, N369-; gp41: K231R; nef: A15D, M194L; p17: D122-; p7: S9P; rev: V102I; vpu: V79D, 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D6E; RT-p51: K11R, T27S, A36E, D39N, T48S, E169D, V179D, Y181C, M184V, R277K, I292V, L310I, D324E; RT-p66: K11R, T27S, A36E, D39N, T48S, E169D, V179D, Y181C, M184V, R277K, I292V, L310I, D324E, I452M, Q524E, R530K, V531I, K558R; gp120: T35A, V57D, E59V, D71G, D74E, E102N, -106K, -107V, N108T, N109Y, T110N, -111Q, -112T, E125-, I126-, A133V, E136D, Y145H, I153V, V154I, P155E, L156F, N160T, S161E, N201K, K203E, E239K, R245S, S246Y, L249K, T250S, N251D, T255A, E262Q, K277E, T288A, D294A, K307A, -308Y, N311K, Q315L, R316N, H324D, N327G, T330N, K332T, N358Y, -368M, -370S, I388L, E401G, R404Q, M406I, G443I, D446N, R448K, D449N, I463V, E472A; gp41: T67A, D109N, K144I, N160S, N166H, K172R, G214E, G220R, D232G, A245V, F263L, A268T, V270A, L294S, S302N, G314R, V321L, Q323L, H331L; nef: M20I, E38A, A49P, E59A, F81Y, L100I, R151T, E155K, A156D, C163S, E174D, S187I, R192H, R194K; p17: A67S, L68F, T90Q, V94I, I111M, Q112K, A118Q, K119A, E120K, A121E; p2: -7T, -10N; p24: I15L, F32Y, T107S; p6: -18G, -19E, K27R, R33K; p7: S4G, K41Q; pro: K45R, Q92H; rev: I21V, R38Q, K50R, I55L, L64V, A68E, L73F, H82N, S86N, *101Q, S112F; tat: A21D, Y26F, S62G, N67S, G79R, P81Q; vif: Y30H, N36K, F39V, H48N, E61D, R63K, I66V, T74P, R92G, R93S, Y111H, K158R, I159R, K167Q, N176K, R181K, R184K, H187Q, T188S, H192Q; vpr: S4A, Y15I, L20I, Q77R; vpu: -2Y, -3D, -6I, -7L, -9V, L16F, I20V, V26A, I28L, W41R, L74V, 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R76Q"}},"children":[{"name":"KU820840","node_attrs":{"div":0.15859,"accession":"KU820840","clade_membership":{"value":"CRF08_BC"},"country":{"value":"MM"},"date":{"value":2013.0},"Strain_name":{"value":"mSSDU220"},"LANL_subtype":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["C482A","G491A","G498A","A507C","A518G","A578T","C583T","A584G","G607A","A614C","A645G","A666T","-699A","-700C","G740A","A797G","T851C","G980A","A1001G","A1007G","T1061A","T1100C","C1103T","A1259G","G1313A","T1335C","C1439T","A1442G","G1450A","T1482G","G1543A","A1580G","T1613C","A1644C","T1646G","T1681C","C1693T","T1722C","G1727A","C1790T","G1841A","A1857G","C2087T","C2199A","A2200G","C2202A","A2215G","A2241G","A2260G","T2269C","A2287G","A2311G","A2341G","A2374G","G2392T","T2431G","A2461G","C2464G","C2503T","G2530A","C2671T","G2683A","A2716G","A2734G","T2737C","G2926A","A2938G","G2947A","T2983C","A3088G","C3100T","C3121T","A3127G","T3181C","A3192G","A3217G","A3239G","A3280G","G3292T","A3364G","T3368C","C3380T","C3399T","A3400G","G3532A","T3542C","A3574G","G3607A","G3643A","T3644A","A3675G","T3712C","G3817A","C3857T","G4027A","A4096G","G4148A","C4210T","A4246G","T4247C","G4252A","A4254G","G4335A","A4338G","G4516A","A4636G","A4661G","T4676C","A4684G","G4689A","C4721A","C4728A","A4733T","T4761G","T4907C","T4917C","A4974T","T4991C","T5028C","G5140A","T5147C","C5171T","C5203T","C5250A","G5257A","A5287C","A5299G","G5370A","C5406T","C5412G","A5418G","C5463T","C5472T","G5548A","G5565A","A5576G","-5601G","T5604-","G5620-","A5622-","T5623G","-5626T","-5628G","C5658T","C5663T","G5668A","A5687T","T5688G","T5704G","A5760G","A5787T","T5788A","T5789C","A5790-","C5792G","A5794G","C5795G","-5799T","-5800G","-5801T","-5802C","-5803A","-5804A","-5805C","-5806A","-5807A","-5808T","A5825G","T5851A","G5853C","A5856G","G5882A","A5907G","A5911C","T5941G","C5974T","T6024A","T6025G","A6026T","T6034C","C6151T","G6158A","A6160C","-6165C","-6167G","-6174A","-6175A","A6180G","A6183C","T6186A","A6192G","-6195C","-6198G","-6201C","-6203C","-6204A","-6205C","-6207A","-6208T","-6209T","-6210G","-6211G","-6213T","-6220G","-6225A","-6226T","C6241T","G6251A","T6263G","G6267C","A6273G","G6277A","T6301C","A6304G","A6330G","G6331A","C6334T","T6403C","A6425G","A6430C","C6441T","A6448G","T6460C","C6483A","T6511C","A6535G","A6581G","T6598C","A6628G","A6640G","T6654A","A6655T","A6689G","C6736G","C6758T","A6774G","A6775T","A6779C","T6793C","A6806G","G6807C","A6825T","C6833A","T6835A","A6837C","A6848G","A6849T","C6855A","T6860C","C6861A","C6919T","G6935A","G6936A","C6937A","T6943C","G6947A","T6949G","C6955G","-6956C","-6957T","G6962A","G6963A","-6964G","-6967A","-6968G","-6969A","-6970A","-6971A","-6972A","-6973T","-6983A","-6989A","-6992T","-6997C","-7004G","-7005A","-7006T","-7007A","-7008A","-7009C","A7016C","A7040G","G7057A","A7063G","A7069T","C7096T","A7107G","A7149C","-7156T","G7160A","A7161C","T7162A","A7165T","G7182A","G7199A","A7265T","G7285A","G7309A","-7311C","C7313-","T7314-","A7315-","G7322A","G7340T","G7341C","G7343T","C7344T","A7373G","A7375G","A7420C","C7421A","A7422G","G7423C","C7424A","A7426G","A7427-","G7428-","C7429-","A7430C","G7492A","A7522G","A7532C","T7537A","G7552A","C7590T","C7625T","A7627T","A7630T","G7633A","G7640A","T7642A","A7685T","C7690T","G7717A","A7720G","A7722T","A7733C","A7769G","A7771T","A7773G","A7791G","T7801A","G7915A","G7918A","A7998G","C8005G","A8019G","A8055G","G8105A","G8133C","G8158A","T8184A","G8185A","T8203A","C8221A","T8239A","A8261G","C8291T","A8303G","G8304T","G8317A","T8323G","C8328T","G8330A","C8331T","C8406A","T8426G","G8453A","T8492C","G8528A","G8531T","C8606T","T8651C"],"INT":["M84I","A125T","K160R","R187K","K188R"],"RT-p51":["T35K","A36E","K49R","D324E","K366R","I382V","E399D","A435V"],"RT-p66":["T35K","A36E","K49R","D324E","K366R","I382V","E399D","A435V","Y483H","L517I","K527R"],"gp120":["N1S","V10I","K18R","E19D","D29E","V57E","E102N","-105D","-106V","-107K","-109G","-112T","-114N","-115S","-116T","-117S","-118T","-119H","-120N","-121W","-122M","-123K","-124D","A133T","L137V","R138T","K140R","N160G","S161N","T191A","A196V","P210Q","I243V","T267N","I279V","D294E","H302Y","E307G","-308D","K309Q","S318A","H324L","P326K","N327T","K332V","A334K","S336H","G361K","G365R","-368M","-370T","-372N","-374S","-375D","-384D","-385N","I388L","I396V","K418R","N432T","G443E","D449N","T471S"],"gp41":["G3A","V7M","G13S","A14L","I24V","Q39H","Q40S","Q41K","S42H","N43-","K77Q","D78E","A96V","Q108Y","D113K","T128S","N140I","K144Q","K156D","N157S","D163S","N166K","D232S","N239S","N251S","A268T","S277N","L294Q","N320D","R330C","R334V","A342I","A343I"],"nef":["D28E","E63D"],"p1":["I5L"],"p17":["E55K","K58Q","I61M","A83V","G91E","E93D","I104V","I111F"],"p2":["-7T","T8N","S10-"],"p6":["L1P","P5L","F15L"],"p7":["F6V","R26K"],"pro":["V15I","K20R"],"rev":["R17K","I21V","H53D","S86N","G104R","G113R"],"tat":["A58T","N67S","L68P"],"vif":["K17R","K33R","A35T","K36N","D45E","H48N","L59V","Y111H","I130F","G185E"],"vpr":["Y15H","T49N","A89T"],"vpu":[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R17K, I21V, H53D, S86N, G104R, G113R; tat: A58T, N67S, L68P; vif: K17R, K33R, A35T, K36N, D45E, H48N, L59V, Y111H, I130F, G185E; vpr: Y15H, T49N, A89T; vpu: A5V, A19V, V21I, Y27L, L33V, V34I, L82I"}}},{"name":"KU820846","node_attrs":{"div":0.15647,"accession":"KU820846","clade_membership":{"value":"CRF08_BC"},"country":{"value":"MM"},"date":{"value":2013.0},"Strain_name":{"value":"mSSDU91"},"LANL_subtype":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["G367A","A379G","T396C","C419A","T467C","C482T","T495G","C525T","C604A","C623T","C635T","T662G","G686A","G687A","C688A","A690G","A692G","A694C","G695T","C697A","T698C","C774A","A815G","A887G","G1002A","A1034G","A1089G","C1098G","C1099T","A1115T","T1172C","C1174G","A1307G","G1388A","G1430A","A1458G","C1679T","C1706T","C1721T","A1781G","G1804A","A1835G","C1960T","A2059G","T2062C","C2083T","A2131G","A2154G","A2164G","C2254A","T2323C","A2344G","A2350G","A2362G","A2459G","C2464A","C2575T","G2602A","G2710A","C2828G","C2848T","G2869A","T2905C","G2950A","C2968G","A3001G","T3002C","A3010G","C3013T","T3049C","A3067C","A3103G","A3127C","A3241C","A3251G","A3271G","G3385A","A3449C","G3454A","G3487C","A3611C","T3644C","T3649A","A3674C","A3676G","G3685A","T3721A","A3814G","A3816G","G3952A","A3973G","G4109A","T4110C","C4138T","A4178G","G4263T","G4376A","T4428A","A4433G","T4534C","C4576T","G4607A","A4625G","T4640C","G4687A","T4694G","T4701C","C4757T","G4769A","G4774A","G4779A","G4799A","G4829A","G4859A","G4864A","A4870G","C4902A","A4904G","G4953A","A4968G","A5021C","A5049G","T5084C","A5090G","C5114A","A5143G","A5164T","C5197T","G5240A","A5279G","A5284C","A5291G","G5336T","C5351T","G5355A","G5363A","A5372G","C5412A","A5453T","C5461A","A5495G","C5513T","G5523A","G5534A","G5556A","A5575G","C5579T","C5600-","-5603A","T5612C","T5616A","-5621C","-5626G","-5628A","G5629-","C5630-","A5631-","G5636T","A5640C","G5643T","A5644G","C5653T","T5654C","G5700A","T5708A","A5716G","G5717A","G5725A","T5728A","G5781T","A5793C","A5830G","G5832C","A5840G","G5861A","G5862C","C5869A","T5899C","G5935A","A5938G","G5948T","G5954A","A5955G","G5956T","A6009G","G6023C","A6130G","-6165G","A6168-","T6169-","G6170-","T6171-","T6172-","A6173-","A6180T","T6181A","A6185G","A6189G","T6193A","-6195G","T6196G","A6197G","-6198T","-6201A","-6205G","-6207G","-6208A","-6209C","-6210C","-6211A","-6213C","-6214G","-6215A","-6216T","-6217A","-6218G","-6219C","-6220A","-6225G","-6226G","T6261A","A6276T","A6324G","G6326A","A6333G","T6341A","A6344G","G6345A","A6346G","A6374G","A6395T","A6458G","T6460G","C6465A","A6502G","A6535T","C6567T","G6569A","A6574T","A6589C","C6599T","C6612T","T6654C","A6661G","A6664G","T6688C","A6777G","G6801T","G6818A","C6819A","A6836G","A6837G","T6838A","A6848C","C6855G","A6856C","A6905G","-6956A","-6957A","A6959G","G6962-","G6963-","A6965-","C6966-","-6977T","-6978A","-6979C","-6980G","-6981A","-6982G","-6983C","C6984T","-6989G","-6992A","-6997A","-6998A","-6999G","-7000T","-7001A","-7002A","-7003T","-7004A","-7005G","-7006C","-7007T","-7008T","-7009A","G7054A","G7055A","G7088C","C7089A","A7099T","G7132A","-7151C","-7152A","-7153G","A7155C","-7156A","C7170T","A7177G","G7190A","G7197A","T7250G","G7252A","A7261C","T7308C","G7310-","A7312-","A7498C","A7502G","C7603T","T7604G","C7605T","T7622A","C7623A","A7626T","G7628A","A7629C","A7655C","T7675C","A7676G","G7677A","A7693T","A7700C","G7701A","A7735G","A7741G","A7742C","A7769C","T7783C","T7852C","C7874A","T7876C","A7880G","A7895G","C7929T","A7942G","G7944A","A7953G","A7964G","G7976A","A8011C","T8060A","A8069C","G8070T","T8071C","G8079A","C8103T","G8134C","G8144A","G8170T","G8188A","C8210T","A8271T","T8279G","T8323A","C8328A","G8349A","G8350A","A8378G","T8440C","A8458G","T8504C","C8552A","G8554A","T8584A"],"INT":["K14R","V112T","I135V","G163V","V201I","I218K","I220V","A278T","R284G"],"RT-p51":["K20R","D53E","K122E","Q245E","D291E","E344D","I386V"],"RT-p66":["K20R","D53E","K122E","Q245E","D291E","E344D","I386V","I452L","K464N","I506L","K527Q"],"gp120":["G3T","N5K","A32S","E34S","N52S","V57L","L58M","-109E","-112Q","N113-","V136E","K141M","-157S","D159E","N160S","T174A","T181S","N202E","T204K","A238V","E239K","E240D","R245S","A253V","-308G","R316M","A322K","P326H","N327G","K332Q","A334S","R351G","-368N","-370G","-372E","-374N","-383S","-384S","-385L","E401K","A412Q","-433Q","N434T","T436D","T439I","D446N","R448K","L466V"],"gp41":["V2A","G3L","T67A","S101V","S107N","Q108L","D109T","M118L","S125D","R133Q","K147Q","K156Q","D163N","L191I","I193V","R198G","P209L","G214E","D217G","R221G","E225K","D232N","C253S","S256L","R259H","T267I","A281T","Q323L","C326G","A342K"],"nef":["G3N","V33A","K39R","R71K","F81Y"],"p17":["G11E","K15R","H28Q","S54A","A90E","N109K","A118K","E120A","A121D"],"p2":["-11A","T12-"],"p24":["L15I","V91I","S120G","P123V","E128D","T148S"],"p6":["R42K"],"pro":["I13V"],"rev":["G3E","D7N","R14K","R32G","K39R","R43K","I55L","V71E","Q74P","G96R","S99N","A108S","A114T"],"tat":["Y26F","R29S","K40R","S46F","R53K","N67D","Q78R","G79R","T82A"],"vif":["R34K","F39L","R63K","V65I","S93N","N95S","L106M","A123T","I128V","K155E","N176K","N186S","*193L"],"vpr":["P4T","V46I","T59A","I63V","Q77H","V84M"],"vpu":["L2S","D3E","-7V","A8-","G10V",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K14R, V112T, I135V, G163V, V201I, I218K, I220V, A278T, R284G; RT-p51: K20R, D53E, K122E, Q245E, D291E, E344D, I386V; RT-p66: K20R, D53E, K122E, Q245E, D291E, E344D, I386V, I452L, K464N, I506L, K527Q; gp120: G3T, N5K, A32S, E34S, N52S, V57L, L58M, -109E, -112Q, N113-, V136E, K141M, -157S, D159E, N160S, T174A, T181S, N202E, T204K, A238V, E239K, E240D, R245S, A253V, -308G, R316M, A322K, P326H, N327G, K332Q, A334S, R351G, -368N, -370G, -372E, -374N, -383S, -384S, -385L, E401K, A412Q, -433Q, N434T, T436D, T439I, D446N, R448K, L466V; gp41: V2A, G3L, T67A, S101V, S107N, Q108L, D109T, M118L, S125D, R133Q, K147Q, K156Q, D163N, L191I, I193V, R198G, P209L, G214E, D217G, R221G, E225K, D232N, C253S, S256L, R259H, T267I, A281T, Q323L, C326G, A342K; nef: G3N, V33A, K39R, R71K, F81Y; p17: G11E, K15R, H28Q, S54A, A90E, N109K, A118K, E120A, A121D; p2: -11A, T12-; p24: L15I, V91I, S120G, P123V, E128D, T148S; p6: R42K; pro: I13V; rev: G3E, D7N, R14K, R32G, K39R, R43K, I55L, V71E, Q74P, G96R, S99N, A108S, A114T; tat: Y26F, R29S, K40R, S46F, R53K, N67D, Q78R, G79R, T82A; vif: R34K, F39L, R63K, V65I, S93N, N95S, L106M, A123T, I128V, K155E, N176K, N186S, *193L; vpr: P4T, V46I, T59A, I63V, Q77H, V84M; vpu: L2S, D3E, -7V, A8-, G10V, L12F, I13V, L16S, V34K, R37E, D40N, W41R, E58D, R73H, R75G, D78G"}}}]},{"name":"CRF08_BC_NODE_0000002","node_attrs":{"div":0.11501,"clade_membership":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["G2693A","-5621A","T5627-","-6167A","-6174A","-6175C","A6488C","C6857T","-6967A","-6971A","T7150G","-7152C","A8273G"],"RT-p51":["A200T"],"RT-p66":["A200T","V466I"],"gp120":["N212H"],"gp41":["M54L","R324G"],"p17":["-122E"],"vpu":["I9V"]},"labels":{"aa":"RT-p51: A200T; RT-p66: A200T, V466I; gp120: N212H; gp41: M54L, R324G; p17: -122E; vpu: 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G220R, R221G; nef: K39R; p6: K31-, D32-, R33K, S47N; p7: K10R; rev: R38Q, K39R, G88R; tat: K19E, P75S; vif: R34K, K36N, 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A91S, A125T, I218T, K269R; RT-p51: P4T, V8I, K43R, D67N, K70R, K104R, V106A, V135I, I178L, M184V, E203K, D218E, K219Q, F227L, I292V, P294T, A317V, Q334N, A435T; RT-p66: P4T, V8I, K43R, D67N, K70R, K104R, V106A, V135I, I178L, M184V, E203K, D218E, K219Q, F227L, I292V, P294T, A317V, Q334N, A435T, K527N, R530K; gp120: E19D, D74N, V80I, Q86E, T104R, N108-, -116S, -117V, -118T, -119Y, -120D, E125-, L137I, K141Q, K142N, Y145D, -157D, N158D, D159R, V180I, T181D, T191S, I197L, P210Q, H212S, N252T, A253V, E265Q, T269A, T292A, K309Q, Q315H, R316M, A322S, K332Q, S335N, S336A, G361R, -368N, -370S, P409S, N432E, -433G, T436G, T439I, K464E, E472K, A473S; gp41: T109P, M118I, D137E, K144N, K156N, D163S, T165S, D217G, G221E, F263C, L265S, F304V, A310T, A312G, I319L, G324R, I332T, A343S, Q345L; nef: S8R, V11P, R22Q, P25R, F81Y, F139Y, R151S, A156V, N162S, V180I, S187I, R192K, R194W; p17: Q65H, Q69K, A118T; p2: -7T, T8N, N9G, S10-; p24: L6I, H87Q, A92P, I124V; p6: -35G, -36P; p7: R11K; rev: I55L, Q95L, S106P, G113R; tat: A21P, L35I, K40T, Y47N, N67D, T82A, E86K; vif: N22H, F39V, H56Y, D78E, R92G, I159R, I166V, K167V; vpr: I74F; vpu: V21I"}}}]},{"name":"CRF08_BC_NODE_0000005","node_attrs":{"div":0.11803000000000001,"clade_membership":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["A1192G","G1430A","G1527A","A1528C","T1854C","G3250A","T4694G","T5062G","T5731C","A6573G","A6774G","A6781-","-6957T","A7782G","T7796A"],"gp120":["-110T","-112N","E240G","N432E","-433P"],"gp41":["N160S"],"nef":["H191R"],"p24":["K154R"],"p7":["E21T"],"pro":["I19T"],"tat":["L68P"],"vif":["I159R"]},"labels":{"aa":"gp120: -110T, -112N, E240G, N432E, -433P; gp41: N160S; nef: H191R; p24: K154R; p7: E21T; pro: I19T; tat: L68P; vif: 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V79A"}}},{"name":"KF835512","node_attrs":{"div":0.14995999999999998,"accession":"KF835512","clade_membership":{"value":"CRF08_BC"},"country":{"value":"CN"},"date":{"value":2007.0},"Strain_name":{"value":"07CNYN325"},"LANL_subtype":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["C179A","G224A","A286G","G401A","C417T","A418G","C419T","A497G","C525T","A530C","C572T","C679T","A680G","-699A","-700C","G740A","C747G","T748C","C773A","C830T","G1002A","G1004A","T1064G","G1078C","G1090A","A1115C","C1316T","G1388A","A1443T","C1491T","A1495G","A1500C","T1501C","A1508G","C1541A","G1543A","C1571T","C1680A","A1689C","A1709G","C1768T","A1879G","A1904G","A1966G","T2041C","C2071T","A2154G","A2202C","A2216T","G2248A","T2315G","T2338C","A2404T","C2419A","G2498A","A2637G","A2645G","T2672C","A2677G","C2756T","G2869A","A2884G","G2925A","G2946A","A2959G","A3007G","T3040G","G3098A","A3099G","G3151A","T3172A","G3221T","G3292A","C3322T","T3346C","A3421G","G3477A","A3491G","T3497A","A3538G","G3607A","A3651G","A3739C","A3802G","A3985G","G4036A","G4145A","C4146A","G4539A","C4543G","T4674C","A4684G","T4694A","C4721A","A4763G","A4870G","T4919C","T5006A","T5028C","C5043T","A5051G","G5060A","A5082G","T5091C","C5250A","T5263C","T5303C","T5314C","G5370A","A5377C","C5412T","T5424C","A5432C","T5439C","C5448T","T5568C","A5576C","A5581G","A5621G","G5668A","A5718G","G5781T","G5784A","A5849G","T5851G","A5896G","A5946G","G5956T","C5958A","C5974A","A6044C","G6158A","A6160C","-6165C","A6174G","A6180T","T6184C","A6192G","-6195G","-6196C","-6198A","-6202T","-6212T","-6217G","-6218C","-6219T","-6220G","-6221A","-6222T","G6277A","A6283G","T6285A","A6304G","T6310C","T6325G","A6327G","A6330G","T6331A","C6424T","T6436G","C6446A","C6477A","C6483A","A6535G","C6599A","G6601A","C6612T","G6638C","C6736A","G6773A","C6774A","T6778G","T6857G","-6956A","-6957T","-6958G","G6962A","C6966G","A6967C","-6968T","-6969C","-6970A","-6977C","-6979A","-6980C","-6981C","-6982A","-6983G","C6984T","-6986G","-6987C","-6988T","-6989C","-6990A","-6998A","-6999C","A7063G","C7064T","A7066G","A7149C","A7155C","-7156A","A7161C","G7168A","G7190A","G7197A","A7345T","A7373G","A7375G","G7402A","T7403C","C7463A","G7477A","T7615C","C7625A","A7626T","G7628T","T7642A","G7677A","G7688A","C7714A","A7722C","A7742C","A7800G","T7801A","G7835A","A7840G","T7921C","G7936A","G7944A","G7956A","A8006G","T8008G","C8047T","A8055G","G8109A","A8262G","C8290A","A8309C","G8357C","T8426C","G8453A","G8531A","G8588A","A8653G","T8672A","A8701T","A8717C","A8804G","T8831C","T8845C","T8847A","T8883C","G8902T","G8917A","G8923T","T8947G","T8948G","C8964T","-8970A","-8971C","-8972T","-8973T","-8974T","-8975C","-8976T","-8977G","-8978C","-8979A","T9014G","G9016C","T9029-","-9033G"],"INT":["A124N","S255N","D256E"],"RT-p51":["K20R","E36A","M41L","L74V","K103N","V135I","Y181C","M184V","H221Y","R277K","R284K","H315Q","D335S","A376S"],"RT-p66":["K20R","E36A","M41L","L74V","K103N","V135I","Y181C","M184V","H221Y","R277K","R284K","H315Q","D335S","A376S","R461K","I466V","S468T","N519S"],"gp120":["K31R","E34D","T35K","N64H","E102N","-105N","-106V","-107S","-109V","-110S","-111S","V144E","N158G","D159G","L198I","T208K","P210Q","L249I","A253V","E262Q","D294E","A307K","D308E","S335A","-368M","N369T","-370N","T371S","-372S","-373S","R404W","A412E","N432T","-433N","N434T","T436A","D446N","R448K"],"gp41":["I24V","L54M","Q108I","D109S","D113E","S125N","D129N","D137E","N140T","K147Q","N166R","V178I","G214E","R218K","I235V","N251S","R269K","N320S","I336L"],"nef":["W5C","K104R","Y120F","Q125H","R151S","V168A","C169S","S187I","R192K","R194M","F202W"],"p17":["H28C","Q65H"],"p2":["-7S","T8-"],"p24":["L6A","V91I","G116A","S120N","E128D"],"p6":["L1I","P30L"],"p7":["P9S","K10R","I12P","R26K"],"pro":["I36V"],"rev":["I18T","I21L","E30K","H53R","S54A","P67S"],"tat":["M1L","K19A","N67T","I69V","R76Q","G79R","G83S"],"vif":["Y30H","K33R","N95S","I166V"],"vpr":["T49N","A89T","N91T"],"vpu":["A5G","V21I","E58D","D81G","L82V"]},"labels":{"aa":"INT: A124N, S255N, D256E; RT-p51: K20R, E36A, M41L, L74V, K103N, V135I, Y181C, M184V, H221Y, R277K, R284K, H315Q, D335S, A376S; RT-p66: K20R, E36A, M41L, L74V, K103N, V135I, Y181C, M184V, H221Y, R277K, R284K, H315Q, D335S, A376S, R461K, I466V, S468T, N519S; gp120: K31R, E34D, T35K, N64H, E102N, -105N, -106V, -107S, -109V, -110S, -111S, V144E, N158G, D159G, L198I, T208K, P210Q, L249I, A253V, E262Q, D294E, A307K, D308E, S335A, -368M, N369T, -370N, T371S, -372S, -373S, R404W, A412E, N432T, -433N, N434T, T436A, D446N, R448K; gp41: I24V, L54M, Q108I, D109S, D113E, S125N, D129N, D137E, N140T, K147Q, N166R, V178I, G214E, R218K, I235V, N251S, R269K, N320S, I336L; nef: W5C, K104R, Y120F, Q125H, R151S, V168A, C169S, S187I, R192K, R194M, F202W; p17: H28C, Q65H; p2: -7S, T8-; p24: L6A, V91I, G116A, S120N, E128D; p6: L1I, P30L; p7: P9S, K10R, I12P, R26K; pro: I36V; rev: I18T, I21L, E30K, H53R, S54A, P67S; tat: M1L, K19A, N67T, I69V, R76Q, G79R, G83S; vif: Y30H, K33R, N95S, I166V; vpr: T49N, A89T, N91T; vpu: A5G, V21I, E58D, D81G, L82V"}}}]},{"name":"CRF08_BC_NODE_0000011","node_attrs":{"div":0.12625999999999998,"clade_membership":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["A694C","G695T","C697A","T698C","C1098G","C1118T","A1568G","T1628G","A1709T","-1732G","-1733G","-1734T","A1759G","G1819A","G2498A","T2542C","C3129A","A3192G","T3391C","A3486G","A3674G","A3675G","G3916A","A4084G","A4178G","G4687A","T4701G","G4774A","T5424C","A5718G","T5728A","A5849G","G6029A","G6179A","A6182G","A6333G","C6334T","T6337G","A6576G","G6588A","G6593A","G7160A","G7212A","A7713T","A7734G","T7921C","A8378G","C8406A","G8453A","A8793G","A8936G","-8972T","-8973T","-8975C","-8976T","-8979A"],"INT":["I135V"],"RT-p51":["V135I","P345Q","K366R"],"RT-p66":["V135I","P345Q","K366R","I452L","K464R","K527G"],"gp120":["E59K","H212Q","R245K","E247K","S453N"],"gp41":["D137V"],"nef":["R151G"],"p17":["E120A","A121D"],"p24":["P123A"],"p6":["S47N"],"vif":["R34K","F39V","R63K"],"vpu":["W41R","D81G"]},"labels":{"aa":"INT: I135V; RT-p51: 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D81G"}},"children":[{"name":"KF835501","node_attrs":{"div":0.15657,"accession":"KF835501","clade_membership":{"value":"CRF08_BC"},"country":{"value":"CN"},"date":{"value":2007.0},"Strain_name":{"value":"07CNYN314"},"LANL_subtype":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["T200G","T201C","A214G","T305-","G365C","G367A","A388G","C419T","C434T","A461T","G498C","A500G","T539C","C558A","T571A","C575T","G607A","G644A","A690G","C747A","C749G","C872T","C890T","A941G","G1004A","T1061C","G1067A","C1136T","T1172C","G1205A","A1242G","C1243T","A1263T","A1268G","A1274C","C1330T","G1339A","C1342G","A1349C","C1350T","T1359A","G1421A","T1501C","A1529G","A1601G","A1643G","T1728A","-1729C","-1730A","-1731G","A1738C","A1746G","C1788G","A1855C","A1920G","C1979G","T2041A","C2101A","C2199A","T2206A","C2254T","T2356C","A2459G","T2485C","T2497C","C2575T","T2581C","A2593G","A2617G","A2627C","A2662G","A2693G","T2770C","C2828G","G2869A","T2885C","T2917C","A3046C","A3067G","G3094C","C3095A","G3097T","A3127T","G3151A","A3164T","G3221T","C3222G","A3224T","G3264A","G3442A","A3449C","A3529G","G3553A","G3643A","G3679A","A3703G","A3718G","A3775G","A3787G","A3816G","C3922T","A4090G","A4333G","G4376A","T4412C","C4471T","G4549A","A4625G","G4642A","C4728A","A4781G","G4799A","T4800C","C4844T","A4845G","A4860G","T4914C","A5005G","T5006C","A5057G","G5059A","T5062C","A5065G","A5085C","G5104A","A5122G","G5134A","A5249C","C5250A","A5279G","A5282C","A5291C","A5312G","C5333T","T5378C","A5432C","A5496C","C5547A","T5568C","A5575G","A5587G","C5600-","-5602C","-5603C","T5612C","A5621C","A5640T","A5687T","T5704A","G5706A","A5711G","T5731G","G5748A","G5781T","A5787T","T5788A","T5789C","A5790-","C5792G","A5794G","C5795G","-5799T","-5800G","-5801T","-5802C","-5803A","-5804A","-5805C","-5806A","-5807T","-5808T","T5851G","G5853A","G5907A","A5918G","A6031G","A6051C","G6073A","-6165A","A6174C","A6176T","T6178C","T6184G","G6186C","A6188T","A6189C","T6190C","A6194-","A6197-","T6199-","A6278C","G6323A","G6329A","T6335G","C6336G","A6338T","G6339A","C6424T","A6425G","A6438T","T6490A","A6500T","A6502T","G6575A","T6586C","G6638C","C6736T","G6776A","A6781C","A6786C","G6799T","G6806A","C6819A","C6824T","A6840G","A6854G","T6857C","A6905G","G6962A","G6963A","-6968G","-6969G","-6970A","-6972G","-6973T","C6975A","-6977T","A6978C","-6979A","-6980A","-6981A","-6982C","-6983T","-7007A","-7008C","-7009C","G7057A","C7089A","C7124A","G7150C","-7153G","A7155C","-7156A","G7252A","G7256A","A7297G","T7323C","A7342T","G7343T","C7344T","A7373G","A7375G","C7463A","A7533G","T7537C","T7615C","C7629A","G7640C","T7642A","A7655C","C7658G","G7660A","A7777C","A7782G","T7796A","A7814T","G7885A","C7917T","T8008A","C8009A","A8014G","A8032G","C8092T","A8093C","T8097C","G8180T","C8183T","A8261T","A8264C","G8317A","T8323A","G8349A","G8356T","G8357A","G8368A","C8369A","C8382T","A8393G","G8476C","C8483T","C8491A","T8492A","T8505C","G8506A","T8507G","A8516G","G8526C","T8568C","A8617G","T8795G","G8823A","T8829A","C8904A","A8905T","A8906G","A8914G","G8923T","C8966T","A8967G","G8968A","-8970G","-8971C","-8974T","-8977G","-8978C","-8993C","-8994C","G9007T","A9009G","T9012C","A9082G"],"INT":["K14R","V201I","R284G"],"RT-p51":["T35K","K122E","I178L","T200A","Q245E","Q334N","E344D","M357L","A376C","M377L","R390K"],"RT-p66":["T35K","K122E","I178L","T200A","Q245E","Q334N","E344D","M357L","A376C","M377L","R390K"],"gp120":["R18K","T22A","N66T","T104-","-107K","-109V","-110T","-111Y","-112N","N113G","-114T","K142Q","N160K","S161G","Y163G","R164K","L165N","I166S","N167S","T191A","Y195F","T216S","E241R","E262Q","D308N","K309N","N311T","Q315H","G318S","A322E","H324Y","-328R","K329-","T334A","S335P","R351G","-368N","-372G","-373S","-374N","-375S","-376N","-377S","-385T","A412E","L424I","-433K","T437E","V468I"],"gp41":["V7A","A14L","I24V","L54M","K77R","D109E","D113Q","M118L","Q119E","K144R","N160S","S165T","I171L","S205L","I264L","L265S","R277S","G293C","N320Y","I321L","F340L"],"nef":["G3S","W5L","S9K","P14S","S45T","A50E","C55Q","K92R","D161N","C163S","Q188M","H191R","R194M"],"p17":["G11E","K18R","E42D","D55Q","L75I","F79Y","G91E","M115T","E122-"],"p24":["L6M","T171V","T178S","T200I","R203K","A204G","P207S","S210T"],"p6":["F17T","E21P","T23A","A25P","P26A","K27E","-35A","P37-"],"p7":["I12T"],"pro":["K41R","Q61E"],"rev":["A11E","I18T","S54K","S56G","T62A","H82S","G111V","S112F"],"tat":["M1T","K19A","K40N","S57R","N67D","K71E"],"vif":["R19K","K36N","H48N","I87V","R92G","Y110H","N140S","R158K","I159T","K160R","K167Q","R173K","K179R","R183H"],"vpr":["T49H","T59A","I60L","I63L","I70V"],"vpu":["L2S","Y27F","L33I","K35R","L42V","E58D","L82V"]},"labels":{"aa":"INT: K14R, V201I, R284G; RT-p51: T35K, K122E, I178L, T200A, Q245E, Q334N, E344D, M357L, A376C, M377L, R390K; RT-p66: T35K, K122E, I178L, T200A, Q245E, Q334N, E344D, M357L, A376C, M377L, R390K; gp120: R18K, T22A, N66T, T104-, -107K, -109V, -110T, -111Y, -112N, N113G, -114T, K142Q, N160K, S161G, Y163G, R164K, L165N, I166S, N167S, T191A, Y195F, T216S, E241R, E262Q, D308N, K309N, N311T, Q315H, G318S, A322E, H324Y, -328R, K329-, T334A, S335P, R351G, -368N, -372G, -373S, -374N, -375S, -376N, -377S, -385T, A412E, L424I, -433K, T437E, V468I; gp41: V7A, A14L, I24V, L54M, K77R, D109E, D113Q, M118L, Q119E, K144R, N160S, S165T, I171L, S205L, I264L, L265S, R277S, G293C, N320Y, I321L, F340L; nef: G3S, W5L, S9K, P14S, S45T, A50E, C55Q, K92R, D161N, C163S, Q188M, H191R, R194M; p17: G11E, K18R, E42D, D55Q, L75I, F79Y, G91E, M115T, E122-; p24: L6M, T171V, T178S, T200I, R203K, A204G, P207S, S210T; p6: F17T, E21P, T23A, A25P, P26A, K27E, -35A, P37-; p7: I12T; pro: K41R, Q61E; rev: A11E, I18T, S54K, S56G, T62A, H82S, G111V, S112F; tat: M1T, K19A, K40N, S57R, N67D, K71E; vif: R19K, K36N, H48N, I87V, R92G, Y110H, N140S, R158K, I159T, K160R, K167Q, R173K, K179R, R183H; vpr: T49H, T59A, I60L, I63L, I70V; vpu: L2S, Y27F, L33I, K35R, L42V, E58D, L82V"}}},{"name":"KF835534","node_attrs":{"div":0.15471999999999997,"accession":"KF835534","clade_membership":{"value":"CRF08_BC"},"country":{"value":"CN"},"date":{"value":2007.0},"Strain_name":{"value":"07CNYN355"},"LANL_subtype":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["T200C","G224A","A278G","A410G","G413A","A418G","C435T","A500C","G603T","T662C","A666T","T667G","C679T","A680G","C688A","G701-","G702-","G703-","A704-","-711G","-712A","-713G","-714A","G717A","C747G","T748C","C749T","T767C","T902C","T992G","G1005C","A1112G","C1229T","A1307G","T1322C","G1450A","A1461G","A1588G","A1712T","-1729T","-1730G","-1731A","G1760A","A1766G","G1804A","C1826A","T1828G","A1982G","C1986A","T1987G","A2018G","G2182A","T2209C","G2210A","T2269A","C2301G","C2326T","C2419T","T2579A","C2671T","A2716G","C2749T","T2824C","T2845G","A2875G","A2884G","G2925A","A2962G","C2968A","G3004A","T3040G","A3079G","G3091A","G3154A","A3247G","A3379G","A3449T","T3496C","C3499A","C3504A","A3508C","G3532A","C3610T","G3685A","G3737A","T3754C","G3756A","T3976C","T3977C","C4021A","G4027A","A4114C","A4181C","A4183C","T4405A","C4608A","T4679C","G4689A","T4694G","C4754A","T4827C","A4870G","T4976C","C5019T","T5028C","A5082G","G5140A","A5267G","A5272G","T5311C","T5319A","G5336A","A5426G","G5431A","C5448A","A5495C","C5508A","T5584C","G5614A","A5622T","-5626G","-5627T","-5628A","T5670A","A5685G","T5704C","T5727C","A5824C","A5825G","A5830G","T5850C","T5857C","G5858A","G5862A","G5865A","C5911T","G5935A","T6024C","A6026C","T6076G","C6097T","A6119G","G6158A","A6160T","-6165C","A6167G","A6174T","A6177G","T6178G","T6187C","A6189G","-6195G","-6196A","-6198C","-6200T","-6201G","-6202C","-6203T","-6204G","-6205G","-6206G","-6207A","-6208T","-6209C","-6210T","-6211A","-6212C","-6213A","-6214A","-6215T","-6216G","-6217G","-6218G","-6219A","-6220G","-6221C","-6222A","-6223T","-6224G","-6225C","-6226A","C6247T","C6252T","T6263G","A6265G","G6274A","A6278G","A6288C","T6307G","A6319C","T6335A","T6340C","A6395T","A6413C","C6441T","A6458G","A6462C","G6463A","C6465T","A6466G","C6483A","C6488A","T6490G","G6498C","A6502G","G6577C","A6648C","G6653A","T6654C","A6684C","C6774G","T6778G","A6785C","G6801A","A6811G","A6849C","A6850C","G6871A","G6947A","C6955G","-6956T","-6957C","-6958T","-6968T","-6969A","-6970C","-6972T","-6973G","A6974C","-6977A","-6979T","-6980G","-6981G","-6982T","-6983A","-6998G","-6999G","-7000A","-7001A","-7002C","-7003A","-7004A","-7005A","-7006C","C7018T","G7033A","A7108G","C7124T","A7129C","A7152G","-7153A","-7156T","G7198A","A7244C","G7268A","G7309A","A7390G","T7400C","G7440A","A7542G","C7574G","C7576T","C7606T","C7625T","A7627T","G7628A","G7677A","A7732G","A7735C","A7744G","G7764A","T7765A","A7771C","A7773G","G7790A","C7926T","G7936A","G7947A","A8055G","G8130A","C8131G","C8210T","A8219T","C8220T","G8243A","T8257C","G8273A","A8295G","A8297G","T8366A","G8432A","T8440C","A8461G","A8465G","T8505A","T8597G","A8643G","T8711C","A8726G","G8729A","A8780G","A8801G","A8804G","G8808A","C8813T","A8837G","A8906T","G8917C","G8923A","C8930T","C8934T","C8966-","A8967C","-8970A","-8971A","-8974G","-8977A","-8978G","-8994G","C9006G","T9068C"],"INT":["M84I","K136H","A278D"],"RT-p51":["D39N","T69S","C162S","D250E","R277K","D291E","H315Q"],"RT-p66":["D39N","T69S","C162S","D250E","R277K","D291E","H315Q","T470N","E471D","V548I","S554N"],"gp120":["V2M","G3E","G4E","V57A","M58L","D74E","K89E","E102N","-105D","-106V","-107I","N108R","-109N","-110G","-111S","-112S","-114R","A133V","L137V","K142E","Y145S","-157D","N158D","D159E","T181S","I187L","A196V","N202D","K203T","T204M","P210Q","Q212K","S215T","E241G","E265A","V267T","K277T","A307G","D308E","N311H","R316K","K332T","G365S","-368M","T371-","N432K","-433R","T436N","K464Q","G472R"],"gp41":["R46K","Q80R","L91V","Q108Y","D109T","S125N","K144S","S154K","K156N","N157S","D163N","T208I","G215E","N251S","R276Q","T306F","G314R","G324R","N331S","I332V"],"nef":["S8R","V33A","H40R","C55S","F85L","I101V","A156T","Q188H","R192T","R194K"],"p17":["H28R","A90S","I111C","A118E","-124I","-125S","V128-","S129-"],"p2":["-7T","T8N","S10A","A11V","I13-"],"p24":["L6A","H87Q","A92P"],"p6":["F17L","-18P","-19T","K27R","R42K","L50W"],"p7":["K41R"],"pro":["L10M","I62V","P63Q","T74A"],"rev":["E30K","Q95E"],"tat":["Q17R","N24K","K40T","S70P","P73S","R76Q","D80N"],"vif":["L8M","A35T","H56Q","N95S","I166V","G185E"],"vpr":["T55A","F72Y"],"vpu":["D3N","A5D","-7G","A8L","V9A","G10V","N73R","R75G"]},"labels":{"aa":"INT: 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I166V, G185E; vpr: T55A, F72Y; vpu: D3N, A5D, -7G, A8L, V9A, G10V, N73R, R75G"}}}]}]}]},{"name":"CRF08_BC_NODE_0000012","node_attrs":{"div":0.11724,"clade_membership":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["-281C","C3405T","G4027A","A4684G","C5579T","G6773A","G6947A","-6957T","-6977A","G7150A","A7155C","A7269C","T8213G","A8746T"],"INT":["M84I"],"RT-p51":["A437V"],"RT-p66":["A437V"],"gp120":["E307K","G365S","-368F","T436D","E472A"],"gp41":["F304V"],"p2":["S10-"],"vif":["K33R"]},"labels":{"aa":"INT: M84I; RT-p51: A437V; RT-p66: A437V; gp120: E307K, G365S, -368F, T436D, E472A; gp41: F304V; p2: S10-; vif: 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I63M, Q77H; vpu: D3N, -7G, I20V, W41R, K44Q, R73N, D81E"}}}]}]},{"name":"CRF08_BC_NODE_0000017","node_attrs":{"div":0.12085,"clade_membership":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["G695T","-697A","T698C","-712A","-713G","-714A","A812G","T1628G","C2301A","G3004A","A3508C","G3756A","G3916A","A4677G","A5825G","A6061T","G6186A","-6198C","-6200A","-6201C","-6203A","-6208A","-6209G","-6212A","-6215A","-6217G","G6227-","A6319C","A6458G","A6502G","-7153A","G7212A","A8032G","T8711C","G8729A","A8823G"],"RT-p51":["T69S"],"RT-p66":["T69S","E471D","S554N"],"gp120":["K69N","N202D","F368N","-370S","S453N"],"nef":["N161D"],"rev":["T62A"],"vif":["I31V"],"vpu":["A5E"]},"labels":{"aa":"RT-p51: T69S; RT-p66: T69S, E471D, S554N; gp120: K69N, N202D, F368N, -370S, S453N; nef: N161D; rev: T62A; vif: I31V; vpu: 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p17: E93D, A121D, E122K; p6: S14G; rev: P100H; tat: 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V112A, I162T, G163A; RT-p51: T27A, V106A, K173N, V179D, D324E, S376A, M377Q; RT-p66: T27A, V106A, K173N, V179D, D324E, S376A, M377Q; gp120: V37M, L57P, K69E, E102Q, -124G, N128K, A133V, K141Q, Q142K, K143R, Y145E, L147F, R150K, N159K, S161Q, A176T, N201R, N202D, A253V, Q259H, Q262E, I279V, D297N, Q300L, K309Q, R316K, S318G, K320T, K332R, R351G, G361K, Y367L, N368F, -370G, -371T, -372N, -373S, -374S, -375S, -376D, -377S, -378I, L388I, K418R, N420K, N432T, E433T, N435G, T437N, T439I, K474R; gp41: S107T, H108L, T109Q, T128S, S165T, A245V, A268T, V301I, D305N, A306V, V321A; nef: E24R, G31E, A60T, K104Q, Q107R, P150Q, R151G, H171Y, R194M; p17: V35L, R43K, E52K, S54P, E55K, Q65H, E73K, A90Q, I111S, Q117K; p2: S10N; p24: T116A, S120N, T148S; pro: V15I, G16E, I62V; rev: E10D, I21F, T62S, S86N, C89G, S106P; tat: M1L, K19E, K40T, N67I, I69V; vif: I64M, R92K, L109M, A129G, R159I; vpr: Y45H, T59A, I63L, N91P; vpu: A3T, R37K, I46L, 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A15V"}},"children":[{"name":"MZ063029","node_attrs":{"div":0.19908,"accession":"MZ063029","clade_membership":{"value":"CRF118_BC"},"country":{"value":"CN"},"date":{"value":2017.0},"Strain_name":{"value":"YN287_168"},"LANL_subtype":{"value":"CRF118_BC"}},"branch_attrs":{"mutations":{"nuc":["A368G","G480A","T539C","A548G","G579A","C590T","G603A","A653G","T777A","T782C","A860G","A932G","C968T","T974C","A980G","C1118T","A1307G","G1313A","A1346G","A1433G","-1449A","-1450G","A1495G","G1498A","A1543G","A1644C","A1725G","-1729T","-1730C","-1731G","-1732G","-1733G","-1734G","T1735A","C1736G","G1737-","A1738-","G1739-","G1740-","A1741-","G1742-","C1744T","C1753T","A1772G","C1903A","G1906A","A1982G","C1985T","T2013C","T2158C","T2257C","C2326T","T2494C","A2551G","C2584T","C2589T","A2612C","C2626A","A2767G","G2788A","G2875A","G2925A","G2946A","A2951G","A3001G","G3016A","A3019G","T3022C","A3031G","G3091A","T3133C","C3140T","A3200G","G3264A","A3265G","A3283G","C3294T","T3349C","G3385A","G3494A","C3499T","G3523A","G3529A","T3559C","T3628C","A3684G","T3721A","C3779T","G3791A","A3805G","G3825A","T3844A","A3866G","C4015T","A4078C","T4085C","C4141T","G4145A","T4153C","A4213G","A4528C","A4555G","A4571C","G4582A","T4640C","A4643G","G4802A","A4862G","C4898T","T4907C","T4911C","C4937T","A4952T","C4967G","C4972G","C4996T","A5050G","C5052A","G5140A","A5148T","A5159G","C5160T","G5167A","C5275T","A5293G","A5360G","C5397T","T5466C","T5480C","T5483C","A5492T","A5495C","C5513A","C5536A","A5537G","G5538A","A5545G","A5602T","A5612C","C5621T","C5679T","T5686A","A5689T","T5707C","G5784A","A5790-","C5792G","C5795G","-5799T","-5800A","-5801T","-5802C","-5803A","-5804A","-5805C","-5806A","-5807A","-5808T","C5827A","A5935G","G5948A","A5957G","C5958A","A5962G","T5964G","A6030G","T6046C","T6101A","A6160C","-6165C","-6167G","-6177A","T6181G","A6183C","T6184C","T6187A","C6189T","A6192G","A6194G","-6195G","T6199-","-6205G","A6209C","-6210C","-6211G","G6212A","A6214G","-6215C","C6216A","-6217A","G6221A","A6222T","G6263T","A6268G","A6281C","A6288C","G6323A","T6325G","T6328C","G6329T","A6330C","A6333G","A6335G","T6337G","T6340C","A6395T","A6425G","G6451A","G6569A","C6592T","G6601A","C6612T","T6643A","A6646T","A6655G","A6659G","A6661C","A6723T","G6743A","A6780G","T6787G","G6801A","G6802T","G6806A","A6840C","A6847C","A6855C","C6888T","T6892C","A6934G","T6958-","G6963A","-6968A","A6969G","-6973G","-6974T","-6980G","-6981C","A6992T","G6993C","T6994A","G7026A","C7089A","A7144G","A7153C","A7154C","-7162G","G7166-","A7167-","G7168-","A7169-","T7170-","A7171-","G7197A","G7256A","A7268C","G7285A","G7428A","G7628A","T7642G","G7677A","T7681C","T7774C","T7796A","C7825T","T7876A","A7929T","C7932T","A7938C","A7950C","A8006G","T8008G","A8018C","T8035C","T8097C","T8103C","A8118C","G8130A","A8152G","T8164C","A8188G","C8196T","G8208A","T8215C","G8216A","T8292G","A8305G","G8385A","A8396T","G8404A","G8407A","A8413C","C8460T","G8479A","C8483T","A8488C","A8494C","T8501C","A8517C","G8518A","T8672G","C8747T","T8789C","A8793C","G8794A","A8824C","C8853T","G8888A","G8923A","G9037C"],"INT":["D6N","S17N","I31V","A124T","K266Q"],"RT-p51":["T165I","K173Q","D177E","R277K","R284K","T286A","T369A","R390K","T400I"],"RT-p66":["T165I","K173Q","D177E","R277K","R284K","T286A","T369A","R390K","T400I","V467I","K530R"],"gp120":["A32T","T35D","V37G","E59G","L83I","E102D","-104T","-105D","-112G","-113T","-114K","V137L","K143Q","Y145S","D157K","E158N","N159S","S161G","T181S","T191A","N212T","E239K","A253V","T269A","Y290F","D294E","D297N","K309R","N311K","R316N","-328T","K329-","K332R","N334A","S335P","T345I","N369D","-374T","-375S","-376R","-377Y","-378N","-379A","-380T","-381N","-382S","R391K","A412E","N434T","N435G","T436R","T437G","R448K","V468I","T472P"],"gp41":["S42N","H108Q","D113E","S125N","S165T","H209L","T210I","N212T","H216P","I235V","N239H","L265S","V267A","E272A","R276H","T298I","S302N","D305N","L330R"],"nef":["A15T","E18D","R21K","R22Q","E24A","H40Y","S46N","D49A","N51T","R59Q","R151Q","D161A","H171Y","R194K"],"p1":["I5L"],"p17":["H28R","G49S","V82I","A90K"],"p2":["G9S","S10N"],"p24":["S16T"],"p6":["R16G","-18G","-19E","E20I","E21T","T22P","T23V","A25-","P26-"],"p7":["K10R","R11K","K26R"],"pro":["D35E","M36I","I62V","P63S","I72T"],"rev":["D7E","S8D","E30D","H53R","S54A","E57A","F63L","I102V","S106P","T114A"],"tat":["L35P","V36A","Q39L","K40T","S46Y","Q54R","R57G","I74L","P75S","T77P","T81P"],"vif":["K122N","H127Q","A129G","A137V","K155R","P156T","G185E","T188S","H192Y"],"vpr":["Y15F","T19V","I63M"],"vpu":["Q2P","T5I","I28L","L74I"]},"labels":{"aa":"INT: 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E30D, H53R, S54A, E57A, F63L, I102V, S106P, T114A; tat: L35P, V36A, Q39L, K40T, S46Y, Q54R, R57G, I74L, P75S, T77P, T81P; vif: K122N, H127Q, A129G, A137V, K155R, P156T, G185E, T188S, H192Y; vpr: Y15F, T19V, I63M; vpu: Q2P, T5I, I28L, 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P119S, I135V, T218I; RT-p51: Q245T, P272Q, E312D, E404D; RT-p66: Q245T, P272Q, E312D, E404D, Q520H; gp120: T3A, D4E, S109D, T115S, -125E, -126I, K141R, H302Y, S306N, K308T, Q315-, T330-, -368D, -371T, -373G, -374T, -376G, -379N, P389Q, R397N, R412E; gp41: Y108F, S192A, V194L, I210T, I266V, Y284H, G326I; nef: A50S, P53E, F143Y, S151A, N157T, F202Y; p17: L34I, I61M, K69N, L107M, N109K, Q127K; p24: M96L; p6: S24P, P25S, -26L; p7: K7R; rev: V102T; tat: T57A, S75P; vif: K36T, D61E, T155N, T180I; vpu: I13V, A19V"}},"children":[{"name":"AF377959","node_attrs":{"div":0.11784999999999998,"accession":"AF377959","clade_membership":{"value":"CRF18_cpx"},"country":{"value":"CM"},"date":{"value":1997.0},"Strain_name":{"value":"CM53379"},"LANL_subtype":{"value":"CRF18_cpx"}},"branch_attrs":{"mutations":{"nuc":["A374G","A386G","A390G","A412G","C471A","A492C","C493A","G495A","A500G","G519A","G524A","A562G","A585G","C586T","A656G","G665C","A666-","G667-","C668-","A689G","C771A","C772G","A815G","T852A","C947T","A1002T","A1097T","C1103T","T1229C","G1271A","A1278G","A1279G","G1313T","C1350G","-1455G","-1456C","-1457C","C1514T","G1690A","C1745-","-1747C","-1748C","C1751T","T1752C","G1760A","T1792C","A1793G","A1839G","A2007G","G2155A","G2173A","C2199A","T2338C","A2395G","A2419G","C2575T","A2578G","A2626G","A2710T","A2727G","A2743G","C2822T","A2842G","G2921A","C2985A","A3151G","G3168A","A3230G","C3252T","C3266T","A3280G","C3294T","T3358C","G3398T","T3449A","T3541C","C3688G","G3756A","T3757G","A3768G","G3880A","G3891A","A4225G","T4234C","A4255G","A4376G","G4388T","A4423G","A4427T","A4608G","G4616A","A4692G","A5187T","C5221T","G5305A","A5312G","C5383T","A5396G","T5424C","A5460G","C5480A","A5545G","C5551T","A5622C","T5641C","T5687A","C5704G","-5739A","A5792G","G5793A","A5795G","T5797A","A5803T","C5806-","T5807-","-5809C","-5810T","-5811T","A5863G","G5948T","A6001G","C6116T","C6165T","-6167A","-6170A","-6171T","-6172A","-6175C","A6176T","-6180A","A6182G","A6186C","C6189A","T6193G","-6198C","-6208T","A6209G","-6215G","-6216A","-6217G","-6218A","-6219A","-6220C","-6221A","-6222G","-6223A","T6252C","A6263C","A6273G","C6318A","A6324G","A6326G","T6328G","A6333G","T6340A","A6471G","A6505C","A6648T","A6664G","A6693G","C6721T","C6752A","A6759C","T6766G","G6774A","A6791G","C6797T","G6821A","A6822C","C6850T","C6919T","A6944-","A6945-","T6946-","A6947-","G6948-","T6949-","C6952A","-6960G","-6961C","-6963C","T6964C","-6969A","-6970T","A6971G","-6976C","-6977A","-6982C","-6988C","-6989T","-6991C","-6993C","-6994A","-6996T","G6998A","A7000T","-7004G","-7005A","-7006T","-7007A","-7008C","-7009T","G7040A","T7075C","C7078T","A7095G","A7106G","A7115G","A7153G","-7154T","T7156A","-7159A","-7162G","-7163G","-7164A","-7165G","A7186G","G7198A","C7411T","C7561A","A7570G","T7604A","C7645T","T7666G","C7688G","C7762T","A7782G","T7801C","A7891G","G7892A","C8005T","C8048G","A8099G","G8110A","G8130A","C8146T","C8149T","T8164C","C8165T","T8166A","G8173A","G8185A","G8222A","G8264A","A8271G","T8280C","A8284G","T8292G","T8384C","T8451C","C8500A","T8501G","T8507C","A8653G","T8675C","G8816A","C8913A","G8917A","A8928C","G8933A","G8968A","A9082G"],"INT":["S39N","V112I","I201V","A205S","I218L","D278G","V281M"],"RT-p51":["T35K","K211R","P243S","V276I","A297E","R358K","S379G","T386I","T400I","V435L"],"RT-p66":["T35K","K211R","P243S","V276I","A297E","R358K","S379G","T386I","T400I","V435L","L452I","S554K","K558R"],"gp120":["A32S","T104I","-105N","-106I","T112K","-116E","-121M","-122E","-123N","-124R","I133T","I137L","K140R","P155Q","N159-","N206S","K265V","H280R","Q300K","Y302S","N304K","R307K","T313A","E316-","V317-","V318-","T319S","Q320K","L321V","G322A","K323T","H324Q","-326G","-328K","-330K","I332N","N364-","S365-","-369S","-370T","-372N","-375N","-377S","-378N","-384D","V396I","N414S","I421V","-434S","-437E","-438V","-439T"],"gp41":["S101T","D110E","D121E","Q129E","N160S","V197I","L249V","L288Y","V307I","V321I","Q323R","I326T","L330R"],"nef":["I10V","Q104R"],"p17":["I19V","K26R","L46I","T53Q","A54T","E62K","K76R","T84V","K109-","S111N"],"p2":["N9H","-12N"],"p24":["V11I","S41T","I91F","N183G"],"p6":["R4K"],"pro":["K14R","K70R"],"rev":["R53C","P67R","D84G","D88N","P100S","Q101*","S106L","V109I","G113R"],"tat":["P3S","N7S","P59S","L68P","Q87*"],"vif":["M8V","T36A","I154L"],"vpr":["N28I","I70V","A93V"],"vpu":["-5H","F27Y","L33V","E60D","L61T","S62-","N69V","-70E","-71M","-72G","-73N"]},"labels":{"aa":"INT: S39N, V112I, I201V, A205S, I218L, D278G, V281M; RT-p51: T35K, K211R, P243S, V276I, A297E, R358K, S379G, T386I, T400I, V435L; RT-p66: T35K, K211R, P243S, V276I, A297E, R358K, S379G, T386I, T400I, V435L, L452I, S554K, K558R; gp120: A32S, T104I, -105N, -106I, T112K, -116E, -121M, -122E, -123N, -124R, I133T, I137L, K140R, P155Q, N159-, N206S, K265V, H280R, Q300K, Y302S, N304K, R307K, T313A, E316-, V317-, V318-, T319S, Q320K, L321V, G322A, K323T, H324Q, -326G, -328K, -330K, I332N, N364-, S365-, -369S, -370T, -372N, -375N, -377S, -378N, -384D, V396I, N414S, I421V, -434S, -437E, -438V, -439T; gp41: S101T, D110E, D121E, Q129E, N160S, V197I, L249V, L288Y, V307I, V321I, Q323R, I326T, L330R; nef: I10V, Q104R; p17: I19V, K26R, L46I, T53Q, A54T, E62K, K76R, T84V, K109-, S111N; p2: N9H, -12N; p24: V11I, S41T, I91F, N183G; p6: R4K; pro: K14R, K70R; rev: R53C, P67R, D84G, D88N, P100S, Q101*, S106L, V109I, G113R; tat: P3S, N7S, P59S, L68P, Q87*; vif: M8V, T36A, I154L; vpr: N28I, I70V, A93V; vpu: -5H, 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F15-, G16-, F17S, E19V, I21E, A22I, -23A, K33Q, L38M, S51L; p7: R11K; pro: L10I, K14R, I15V, G16E, E35T, I62V, C67Y; rev: I59V, P67S, D84G, P100S, T102E, V104L, A108T; tat: Q35P, E71K, P73S, T77A; vif: T67I, M109L, D113A, T151R, I154L, R167K, M189T; vpr: N48D, E58I, I70T, I83V; vpu: -5Q, F27L, I28V, L34R, K37R, E44D, -67V, -68G, -70Y, -71N, -72L, -73G, H74Y, N75-, P76-, G77-, 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S16T, I58V, A177G, T178S, E180D, R203K, A207S; p6: F17V, E29D, T39A, K42R, S47N; pro: I36-; rev: Y28C, R48K, R50K, D88N, S92-, G93-, T94-, Q95-, T102S, V104M, S107P; tat: P6F, E9A, K29E; vif: V31I, K33R, A35V, F39S, E45Q, E61K, K63T, E78K, K92E, E117D, I120V, N140S, R167Q, Q178R, G182D; vpr: N28T, E58G, H77Q, V84I, S96F; vpu: -5M, V10I, V21I, I28L, D40E, L42-, I43-, E44-, R45-, I46-, R47-, D48-, 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D6E, E13D, L74I, I201V; RT-p51: D123E, T173K, K174E, L283I, A286T, H334Y, R390K, N418S, H421Y, V435A; RT-p66: D123E, T173K, K174E, L283I, A286T, H334Y, R390K, N418S, H421Y, V435A, L452I, L469I, S491T; gp120: D21N, A32S, K37S, -105N, -106V, I133V, I137L, K143Q, -157S, -161N, E183D, N203Q, R307K, Q315H, K323E, -328K, I332V, V402T, I411S, K433Q, -437N; gp41: K172R, N195K, I222T, I264L; nef: V30A, G31-, V33E, D36E, L37E, D38Q, A42S, I43V, S45N, C55Y, A60E, Q61-, Y115F, F121L, Y135F; p17: L68V, D121A; p24: M96I, G116R, E128D, S200N, A207P; p6: N3K, F15L, -23P, L35K, L38F, T39S, *50S; pro: E35D; rev: A15T, K30E, E54A, N82T, A108V; tat: Q24N, G61D, Q76R; vif: M109L, K122N; vpu: P3D, F27Y, L33I, -67M, -68G"}},"children":[{"name":"AY586540","node_attrs":{"div":0.12968,"accession":"AY586540","clade_membership":{"value":"CRF18_cpx"},"country":{"value":"CU"},"date":{"value":1999.0},"Strain_name":{"value":"CU76"},"LANL_subtype":{"value":"CRF18_cpx"}},"branch_attrs":{"mutations":{"nuc":["G301A","G378A","C379A","G407A","A437G","A461G","T485G","A509G","C531T","G534T","G537A","C558A","A605G","A606G","A699G","A762G","G776A","C917T","G977A","A992G","C1005G","C1040T","G1090A","C1115T","C1211T","G1298A","A1370G","G1404A","C1415T","G1430A","A1442T","C1449A","-1452A","-1453C","-1454C","C1536A","G1589A","T1598C","G1619A","A1691G","C1767T","A1775G","A1776G","G1779A","G1781A","A1782-","A1784-","A1840G","G1981A","A2007G","A2215G","A2242G","A2368G","G2498A","T2521C","G2714C","T2824G","A2887G","G2902A","C2985T","G3004A","G3010A","A3037G","G3094A","A3136G","G3169A","A3193G","A3196G","C3253T","C3266T","T3355G","A3357T","A3364G","T3368C","A3463G","G3477A","G3494A","G3523A","C3533G","A3556G","A3562G","A3565G","T3566C","C3567A","A3568G","C3682A","T3754C","G3766A","A3768G","G3772A","C3773T","T3946C","T3968C","T3985G","T4015C","T4073C","C4075T","A4076C","A4162T","G4228A","T4276C","A4303C","A4391T","C4396A","A4414C","T4537C","A4546T","T4656A","G4695A","G4696A","G4769T","A4774C","G4784A","G4816A","A4861G","C4914T","A5030T","A5140G","T5203C","G5212A","C5237T","C5336A","G5363A","A5462G","C5480A","G5548A","A5566C","C5579T","T5600-","A5607G","A5611G","T5612G","A5613G","A5619T","-5620G","A5629G","C5631T","G5635A","A5652T","G5668T","T5669G","A5706T","A5728G","A5734T","A5770T","T5781G","A5787C","-5791G","C5792A","C5793G","C5797T","T5799A","G5800T","T5801C","G5803A","G5808T","-5812A","-5813T","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","C5851G","-5866T","A5867C","G5907A","A5916T","T5917A","A6008G","A6030G","C6100T","-6175T","A6176T","A6182G","A6183G","T6184A","T6187C","C6189A","A6194T","-6197G","-6198C","-6200A","-6201G","-6202C","-6203A","-6204A","-6205T","-6206A","-6207G","-6208T","-6209A","-6210G","-6211C","-6212A","-6213T","-6214A","-6215A","-6218G","-6219C","-6220T","-6221A","-6222C","-6223A","-6225A","-6226A","-6228A","-6229A","A6248T","A6249T","A6263G","A6275C","C6289T","T6307A","C6317T","T6322A","A6323G","-6327G","A6332T","G6339A","T6382C","G6391A","A6395T","C6463A","A6464C","C6489G","C6496T","C6545T","A6616G","A6637G","A6639C","A6649C","A6654C","A6669G","A6684G","T6772C","G6774A","G6781T","A6800G","A6822G","G6848T","A6935G","A6936C","C6938T","-6961T","A6962G","-6966C","-6968T","-6969G","-6970G","-6971A","-6972T","-6973A","-6974A","-6975A","-6976A","-6977C","-6978T","-6979A","-6980G","-6981A","-6982T","-6983A","-6984A","-6985C","-6986A","-6987C","-6988T","-6989A","-6990C","-6991A","-6993A","-6994T","-6995A","-6996C","-6997G","-6998C","-6999A","A7004G","A7005G","C7020A","T7107C","A7123G","T7142C","G7145A","A7148C","-7154G","A7183G","G7198A","T7222C","G7285A","A7306C","A7315G","G7366A","G7369A","C7463A","A7591G","T7622A","T7627C","G7640A","A7691T","A7701C","T7702A","A7782C","T7796A","T7888G","T7921C","G7944T","A7974G","C8005A","G8030A","C8044G","T8097G","C8123T","C8146T","A8152G","T8155C","T8171G","G8234A","T8235C","G8264A","G8276A","G8329A","C8342T","G8354A","A8370C","C8413A","T8414A","C8415G","C8416A","G8418C","C8419T","G8421C","A8423T","A8425G","G8427A","G8428C","A8429T","G8430C","A8432T","G8433C","A8434C","A8455G","C8456A","A8459G","A8465G","T8470G","A8482G","G8502A","T8505C","T8507C","C8509G","T8511C","G8513A","-8521A","-8522G","-8523G","T8546C","G8558C","A8576T","A8647T","C8650T","A8652C","A8660G","A8662C","C8676T","C8684T","C8702T","A8739G","A8750C","A8756C","G8774A","C8790T","C8831T","G8852A","T8887A","A8904G","G8933A","G8936A","A8977G","C8978A","A8979C","C9155T","A9159T","T9160A"],"INT":["C65R","F100L","I101L","T206S","D207E","L213F"],"RT-p51":["V135I","E207Q","A297V","Y421F"],"RT-p66":["V135I","E207Q","A297V","Y421F","R461K","V467I","Q480E","T491Q","D529E","K558R"],"gp120":["N5H","R18K","N21V","N52D","E59G","T110G","T112N","N113T","T115A","-116S","-117N","-118S","-119S","-120I","N159D","T181S","T204P","T212R","K261T","K262T","K265N","N267T","N272S","K277R","K307E","E309D","V318A","E323G","V332Y","N361A","-378N","-379K","-380T","-382G","-383T","-384W","P389Q","V418S","F430L","V431I","Q433H","-438V","-439T","K474R"],"gp41":["L54M","S107T","D113N","I130L","N133T","N160T","S165T","R214L","E224G","A243T","D247E","L265W","L277S","L290V","V311T","V321I","A325T"],"nef":["I10L","P24Q","P25E","A26L","A27P","K28R","G29T","A30P","-31P","Q38R","V43G","N47S","A54T","Y55H","A56G","W57R","-61E","Y102F","S103F","Q107P","I133V","P150S","S151N","M182K","T188A","K192R"],"p17":["A15K","P66S","A67S","V68I","L75I","R91G","L107I","T122A"],"p2":["Q6H","-10T","A11N"],"p24":["M15I","P92A","E98D","S120N","G225S"],"p6":["P30S","K33-"],"p7":["L24I"],"pro":["K70R"],"rev":["R17S","T32A","R53S","S61N","R66G","S92F","P100S","S103P","V108G"],"tat":["K29R","A58T","N64H","N78S","G79W"],"vif":["L24I","G37N","K63T","R77K","K92R","H110Y","T151A","E185G"],"vpr":["H45Y","H77Q"],"vpu":["L4F","-5E","S8G","V10I","V21C","R41G","I43F","N55Y","D58E","V65M","L82V"]},"labels":{"aa":"INT: C65R, F100L, I101L, T206S, D207E, L213F; RT-p51: V135I, E207Q, A297V, Y421F; RT-p66: V135I, E207Q, A297V, Y421F, R461K, V467I, Q480E, T491Q, D529E, K558R; gp120: N5H, R18K, N21V, N52D, E59G, T110G, T112N, N113T, T115A, -116S, -117N, -118S, -119S, -120I, N159D, T181S, T204P, T212R, K261T, K262T, K265N, N267T, N272S, K277R, K307E, E309D, V318A, E323G, V332Y, N361A, -378N, -379K, -380T, -382G, -383T, -384W, P389Q, V418S, F430L, V431I, Q433H, -438V, -439T, K474R; gp41: L54M, S107T, D113N, I130L, N133T, N160T, S165T, R214L, E224G, A243T, D247E, L265W, L277S, L290V, V311T, V321I, A325T; nef: I10L, P24Q, P25E, A26L, A27P, K28R, G29T, A30P, -31P, Q38R, V43G, N47S, A54T, Y55H, A56G, W57R, -61E, Y102F, S103F, Q107P, I133V, P150S, S151N, M182K, T188A, K192R; p17: A15K, P66S, A67S, V68I, L75I, R91G, L107I, T122A; p2: Q6H, -10T, A11N; p24: M15I, P92A, E98D, S120N, G225S; p6: P30S, K33-; p7: L24I; pro: K70R; rev: R17S, T32A, R53S, S61N, R66G, S92F, P100S, S103P, V108G; tat: K29R, A58T, N64H, N78S, G79W; vif: L24I, G37N, K63T, R77K, K92R, H110Y, T151A, E185G; vpr: H45Y, H77Q; vpu: L4F, -5E, S8G, V10I, V21C, R41G, I43F, N55Y, D58E, V65M, 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N18K, I72V, L74I, I84M, I101L, K111T, I135V, Q136R, D167E, I203M; RT-p51: E6T, K11N, K20R, K22R, C38F, D123N, I135V, S162Y, T173A, K174N, D251A, K275Q, K277R, Q278H, K281R, D324E, S359A; RT-p66: E6T, K11N, K20R, K22R, C38F, D123N, I135V, S162Y, T173A, K174N, D251A, K275Q, K277R, Q278H, K281R, D324E, S359A, K461R, V466I, T468S, N519S, Q524E; gp120: L6M, D29N, V40I, N57I, H77Q, -111V, -112S, S114T, S115G, S116C, -117T, T118N, -119N, -120N, -121C, -122T, -123V, -124S, N128E, S130H, T135G, -137G, K139R, V154A, P155L, N157K, N158D, N159R, S160P, E162N, N167K, D251N, E262N, I281T, L289V, Y290V, A291-, T292-, G293-, I295-, N297D, I305V, G307R, T308K, D309N, N311T, N312D, R315H, A318T, R322K, K329T, K334Q, G338A, K361G, S365K, W367L, N368L, N372S, S373N, -375D, -376G, -377A, -378N, -379N, -380T, P389T, N432Y, N436T, R441T, G445R, D446N, E462K, L466I, E479G; gp41: V7M, A14T, K56R, R68K, V69I, W99*, D109N, E119D, N126K, E129D, I130T, N140S, A151S, D163S, K172R, A216V, R231K, D247E, Y257C, V264A, 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D62-"}}},{"name":"HQ385477","node_attrs":{"div":0.13649,"accession":"HQ385477","clade_membership":{"value":"CRF49_cpx"},"country":{"value":"GM"},"date":{"value":2002.0},"Strain_name":{"value":"N18380"},"LANL_subtype":{"value":"CRF49_cpx"}},"branch_attrs":{"mutations":{"nuc":["-152T","A304T","A356G","G394A","G407A","C417A","G452A","G455A","C467T","C531T","G534A","T536C","C537A","C539T","A557G","G582T","C603A","G612C","C626A","C679T","G687A","A705-","A706-","C707-","A708-","C710-","A711-","G712-","C713-","G715-","T716-","C734T","C773A","A774G","A869G","G906A","T936C","T974C","A1028G","T1063C","G1090C","A1176G","G1192A","G1232A","A1263T","G1271A","C1330A","C1351T","G1404A","C1406T","G1443A","T1444C","C1453-","C1454-","-1455G","-1456G","-1457C","-1459G","G1508A","T1547C","G1625A","A1657G","T1676C","C1682T","C1714T","A1740G","G1763A","T1791G","G1839A","G1845C","G1852A","G1927A","G1972A","A2002G","C2062T","A2154G","A2155G","A2161G","T2195C","C2199T","G2224A","A2226G","A2230G","C2238T","A2239C","A2317G","A2374G","A2395G","A2422G","C2449T","G2459A","A2463G","G2530A","C2575T","A2612G","A2615G","A2626C","A2627C","A2692G","A2794-","A2881C","A2918C","A2920G","A2938G","C2968A","G2972A","C3002A","A3103G","G3127A","G3151C","G3169A","G3173A","A3193G","T3260A","A3286C","T3399C","C3449T","A3454G","C3499T","T3542C","T3577C","C3688T","C3691T","A3709G","G3787A","G3859A","A3931G","A3989G","A4036G","C4043T","T4075C","A4096G","T4153C","A4372G","C4543G","A4567G","G4581A","T4656C","A4687G","A4775G","G4864A","G4975A","G5087T","C5162T","C5182A","A5210C","C5227T","T5239C","G5257A","A5268G","A5282T","A5290G","C5336T","G5448A","A5462G","A5463G","G5499A","C5513A","A5586G","T5604G","T5616C","C5627T","T5705A","G5737A","A5748T","A5760G","T5778C","-5790G","-5791G","-5792A","-5793C","G5803C","A5805G","G5808C","-5809C","-5811T","G5812A","-5816G","-5819T","A5839G","T5857G","C5859T","A5914G","A5935C","G5948T","G5963A","G5972A","A5995T","G6029A","T6046G","A6061C","T6067C","C6083T","T6166A","G6170T","C6177G","A6179G","A6182T","T6184A","C6190A","A6194T","-6195C","-6202T","-6203G","-6209A","-6214A","-6215C","-6216T","-6217G","-6219A","-6220C","-6223A","-6225A","A6253G","T6271C","A6272C","A6286G","C6289T","C6293A","T6295C","A6311G","C6317T","T6321G","C6401G","T6409C","C6483T","A6488T","A6489C","G6498C","T6504C","G6526C","T6531C","G6569A","G6575C","G6593C","A6594C","T6600C","G6605A","A6638G","A6640G","G6647C","G6655T","C6666T","T6745C","C6752A","C6758T","A6765C","G6771A","A6780C","A6820G","A6848C","A6850C","G6860C","A6862C","A6863G","C6864A","A6868G","C6874T","T6883G","G6886A","A6887C","C6888A","-6956T","-6961T","-6963G","-6965A","-6966G","-6967T","-6968T","-6969G","-6970G","G6972A","-6975G","A6989G","C6993G","T7087C","A7152G","A7153G","A7154G","A7157G","T7159G","A7163G","C7164A","G7195A","G7269A","G7281T","G7324A","G7343A","G7349A","C7393T","G7395A","C7597T","T7609C","G7658C","G7666A","G7669C","A7700T","A7722G","A7744C","A7761G","G7765A","C7874A","A7880G","T7912C","G7957A","G8050C","G8107A","A8130T","T8172A","T8176C","G8216A","G8219A","G8231A","G8234A","G8267A","T8280G","G8287A","T8302C","G8348T","C8354A","A8396G","G8402A","A8408T","C8491G","G8534A","T8568G","A8584T"],"INT":["I72V","P90S","R269K"],"RT-p51":["K20R","T35I","E44G","S48F","E122K","D123S","T173A","K174E","E177D","I178L"],"RT-p66":["K20R","T35I","E44G","S48F","E122K","D123S","T173A","K174E","E177D","I178L"],"gp120":["S1R","A2V","A32S","G37S","V40I","E59K","N64K","K69N","H77Y","-106L","-107N","N108S","A109T","-111N","-112T","S115T","-117A","-124D","I133M","-137G","R138Q","L147I","I153V","P155S","I156S","N161S","Q183E","P210L","E239K","E241Q","I242V","E247P","I249T","D251N","E265P","K267N","P271L","A288V","-294A","Q300K","H302Y","N304T","S306N","D309T","R315N","E332H","A336P","S337N","I343M","M344I","T345Q","S366T","N368Y","E370S","T371S","N372W","S373N","T374G","-375N","-376D","-377S","-385T","T433S","N434R","N435D","N436E","N437D","M447I","R472K","R476I"],"gp41":["A14T","G16R","R31K","E119Q","N122S","N140S","Q147H","D153G","L191I","I193V","F263L","H276L","D305N","A306T","A310T","V311I","A322T","F326C"],"nef":["N4K","M20I","A50S","L76V","Y81F"],"p1":["N9S"],"p17":["A15E","R20Q","Q28K","P66S","A67T","L68I","A83S","Q90K","E93Q","T115M","A118T","N124I","S126-","S127-","I128-","S129-"],"p2":["V7T","T10G","N11S"],"p24":["I15V","V59I","L111P","G120A","S149G","R154K","T178S","T200N","G225S"],"p6":["A12V","I21V","L38V"],"pro":["R14K","G16A"],"rev":["K24R","A37T","A68P","E87K"],"tat":["K29R","S46Y","G83D"],"vif":["K34R","R93K","R130K","R167N"],"vpr":["E55G","I60L"],"vpu":["A7V","L33Q","D44N","R47S","V65Q","E66N","N78D"]},"labels":{"aa":"INT: I72V, P90S, R269K; RT-p51: K20R, T35I, E44G, S48F, E122K, D123S, T173A, K174E, E177D, I178L; RT-p66: K20R, T35I, E44G, S48F, E122K, D123S, T173A, K174E, E177D, I178L; gp120: S1R, A2V, A32S, G37S, V40I, E59K, N64K, K69N, H77Y, -106L, -107N, N108S, A109T, -111N, -112T, S115T, -117A, -124D, I133M, -137G, R138Q, L147I, I153V, P155S, I156S, N161S, Q183E, P210L, E239K, E241Q, I242V, E247P, I249T, D251N, E265P, K267N, P271L, A288V, -294A, Q300K, H302Y, N304T, S306N, D309T, R315N, E332H, A336P, S337N, I343M, M344I, T345Q, S366T, N368Y, E370S, T371S, N372W, S373N, T374G, -375N, -376D, -377S, -385T, T433S, N434R, N435D, N436E, N437D, M447I, R472K, R476I; gp41: A14T, G16R, R31K, E119Q, N122S, N140S, Q147H, D153G, L191I, I193V, F263L, H276L, D305N, A306T, A310T, V311I, A322T, F326C; nef: N4K, M20I, A50S, L76V, Y81F; p1: N9S; p17: A15E, R20Q, Q28K, P66S, A67T, L68I, A83S, Q90K, E93Q, T115M, A118T, N124I, S126-, S127-, I128-, S129-; p2: V7T, T10G, N11S; p24: I15V, V59I, L111P, G120A, S149G, R154K, T178S, T200N, G225S; p6: A12V, I21V, L38V; pro: R14K, G16A; rev: K24R, A37T, A68P, E87K; tat: K29R, S46Y, G83D; vif: K34R, R93K, R130K, R167N; vpr: E55G, I60L; vpu: A7V, L33Q, D44N, R47S, V65Q, E66N, N78D"}}}]}]}]},{"name":"results/subtype_trees/J.nwk","node_attrs":{"div":0.08751999999999999,"clade_membership":{"value":"J"}},"branch_attrs":{"mutations":{"nuc":["C153T","-166G","-167G","A278G","-280G","A398G","A425G","A461C","T486C","A491G","A492T","A503C","A516C","A520T","T525C","A527C","C539T","A540C","T549A","C558A","A605G","G615A","T641C","A644G","A656T","T662C","G665A","A674G","C684-","G686-","A689-","C691-","C700A","G702A","G703A","A705G","G709A","C713T","-714C","C731T","A743G","C748T","A749G","A759C","T760C","A774C","A818G","G821A","T892C","G893C","T904C","C917T","G920A","C947T","C1005G","C1040T","A1067G","G1109A","C1118T","C1136T","T1143C","T1175C","G1199A","C1211T","C1247A","A1292T","C1299T","T1325C","G1339A","G1355A","C1406T","C1446A","A1448C","-1452A","-1459A","G1472A","C1478T","T1481C","G1489A","-1503G","-1504T","-1505T","A1529G","C1536A","C1541A","G1543A","T1547C","A1643G","A1657G","T1676C","A1776-","A1903C","G2201C","A2210G","C2263T","A2275G","C2326T","G2456T","T2476C","T2521C","A2579T","C2605T","T2620C","A2641G","T2653C","A2662G","A2674G","G2682A","G2683A","C2694T","A2707G","A2710G","A2713G","A2716G","C2749T","A2794G","G2821A","C2839A","G2842A","C2978T","A3019G","G3221T","C3224T","A3226G","A3280G","A3334G","G3379A","A3388G","G3398A","A3400G","T3436C","C3449A","A3487G","T3493G","T3497A","A3508C","T3530C","A3538C","C3545T","A3565G","C3567T","A3607G","C3610T","C3665G","A3676G","G3796A","G3859A","A4071T","C4072T","C4079T","T4135C","A4150T","C4181A","A4183G","G4264A","T4276A","G4354A","G4582A","G4642A","A4643T","T4652A","C4665T","T4674A","G4696A","T4701C","G4726A","G4766A","A4820T","A5085C","A5187G","T5281C","T5357A","A5717G","-5791G","-5792A","-5793A","G5856A","C6134A","C6160T","G6170A","A6172C","A6192C","-6195G","-6198A","-6202T","-6203A","-6204G","-6205T","A6228-","A6276G","A6311G","A6323G","G6578A","A6602T","A6653G","T6733A","T6766C","T6943C","C6951G","G7026A","A7042G","-7165T","G7197A","A7240G","C7511T","A7552G","G7657A","A7689G","C8171T","G8216A","A8367-","G8368-","A8426T","A8458G","A8531G","C8603T","A8794G","C8810T","C9073T","C9078T","A9095G","T9180C"],"INT":["Y99F","Q136K"],"RT-p51":["E36Q","T39A","S162C","G196E","T200R","D324E","A376S","E404D","V435M"],"RT-p66":["E36Q","T39A","D121Y","S162C","G196E","T200R","D248E","D324E","A376S","E404D","V435M","L452I","E471D","S491L","Q524E"],"gp120":["S1N","L94I","K141R","K150R","I153V","N157D","T250S","K267E","A288V","D294E","L341I","-370S","R391K","R448K"],"gp41":["E129G","Q290C","D305N"],"nef":["P24A","E28D","K39R"],"p1":["N9S"],"p17":["E42D","T53S","I61L","E62V","K69Q","S72T","L75I","V94I","T115A","Q117K","A119-","T122K","G123K","S125N"],"p24":["A6L","M10P","I15L","M54T","I58T","P92A","E187D","R203K"],"p6":["D32E"],"p7":["G8N","-13V","L24I","R26K"],"pro":["E35D"],"vif":["R19N","N22K","H27Y","Y30N","R37K","R47N","E78D","R167Q"],"vpu":["K37R"]},"labels":{"aa":"INT: Y99F, Q136K; RT-p51: E36Q, T39A, S162C, G196E, T200R, D324E, A376S, E404D, V435M; RT-p66: E36Q, T39A, D121Y, S162C, G196E, T200R, D248E, D324E, A376S, E404D, V435M, L452I, E471D, S491L, Q524E; gp120: S1N, L94I, K141R, K150R, I153V, N157D, T250S, K267E, A288V, D294E, L341I, -370S, R391K, R448K; gp41: E129G, Q290C, D305N; nef: P24A, E28D, K39R; p1: N9S; p17: E42D, T53S, I61L, E62V, K69Q, S72T, L75I, V94I, T115A, Q117K, A119-, T122K, G123K, S125N; p24: A6L, M10P, I15L, M54T, I58T, P92A, E187D, R203K; p6: D32E; p7: G8N, -13V, L24I, R26K; pro: E35D; vif: R19N, N22K, H27Y, Y30N, R37K, R47N, E78D, R167Q; vpu: 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Q28P, P30T, K31G, P49Q, S51*, Q52K; pro: L10I, T12K, D35N, M46L, R57K; rev: I21L, E32T, T62S, P103S, C107F, G111E; tat: E2D, C31S, Y32F, V36N, L39V, D67A, I69L, R78N; vif: Y30H, L39M, E63A, L81M, K92E, K122E, T159P, K160R, G185E, M189V, N190S; vpr: N16S, N48H, A93S; vpu: P3T, A19V, V21I, V26A, K37R, D40E, E58D, W77G"}}},{"name":"KP109503","node_attrs":{"div":0.15567999999999999,"accession":"KP109503","clade_membership":{"value":"CRF11_cpx"},"country":{"value":"CM"},"date":{"value":2011.0},"Strain_name":{"value":"DEURF11CM015"},"LANL_subtype":{"value":"CRF11_cpx"}},"branch_attrs":{"mutations":{"nuc":["A368G","G407A","G425A","A431G","C471G","C476T","A499G","A500G","A592T","A654C","A656G","G686A","G712A","C767T","A774T","G791A","T824G","A836G","T944G","G977A","G978C","T992G","A998G","G1019A","T1063C","A1079T","C1095A","C1096A","A1097C","C1187T","A1192G","A1208G","G1271T","A1277G","C1280T","C1295A","C1299A","C1322T","T1329A","T1334C","T1362C","A1367G","G1404A","G1430A","T1444C","C1449A","A1461G","A1494-","A1495-","A1496-","G1498A","A1499G","T1501G","T1502A","-1503A","-1504T","-1505T","G1619A","T1646C","G1673A","T1681C","C1682A","A1733G","A1735C","G1736C","T1741G","A1742G","G1743A","C1744G","C1745A","-1746T","-1747A","-1748G","T1752C","C1754T","C1756A","A1758G","G1769A","G1771C","G1772A","G1781A","T1791A","A1794G","C1825T","T1828A","C1831T","A1835G","C1845G","G1846A","G1849A","G1855A","G1858A","A1861G","G1907A","G1920A","A1945G","G1972A","G1979C","A1981G","G1985C","C1987T","A1990T","G1997T","A1998G","G1999T","A2014C","G2023A","A2057C","G2059A","C2062T","T2071C","T2086A","A2108G","A2113C","G2134T","C2149G","A2155G","A2215C","A2241G","A2243G","A2344G","T2383C","A2413G","C2464T","C2467T","T2476C","G2566A","T2632C","G2656A","G2662A","G2705A","A2714G","T2735C","A2752G","C2756T","T2758C","A2764G","G2830A","C2885T","A2938G","C2968A","A3027G","C3067A","T3096C","A3103G","A3115G","A3116G","C3129A","T3172C","A3211C","A3217G","A3268G","G3279A","A3387C","T3399C","T3414A","A3477G","G3483A","G3494A","G3553A","G3564A","T3613C","A3658C","T3757A","A3760G","A3775G","T3793C","A3794C","C3829T","A3901G","T3924C","G4109A","A4111G","G4145A","C4146G","A4189T","G4228A","G4243A","G4276T","C4396T","T4397A","G4573A","G4622A","G4677A","A4694C","A4701G","C4728A","T4738C","A4820C","G4859A","A4861G","G4870A","G4888A","T4916C","C4923A","T4940C","A4956C","A5005G","A5049C","A5066C","T5072G","A5119G","G5128A","C5149T","A5159G","T5182C","C5213A","C5251A","T5292C","G5437C","C5446A","T5457C","A5460G","A5482G","T5484A","A5495G","G5496T","A5499G","G5538A","-5603C","G5619A","C5620A","A5621C","A5652C","A5659C","A5685G","G5686T","G5687A","T5708A","A5720G","G5775A","G5794-","A5795-","A5796-","T5798-","C5801A","A5802G","A5805G","C5806T","T5808G","-5809G","-5810C","-5811A","A5907G","T5923C","A5926C","G5944A","A5947G","G5948T","C5989T","T6025G","G6029-","A6030-","A6031-","A6051C","C6052T","A6092G","C6097T","G6170-","T6171-","A6172-","A6173-","A6174-","A6176-","A6177-","T6178-","G6179-","A6182-","C6183-","T6184-","A6185-","T6187-","A6188-","-6191C","-6192A","-6193T","-6194A","-6195A","-6196T","-6197A","-6198G","-6199C","-6200A","-6201C","-6202T","-6203G","-6205A","-6208A","-6209A","-6210A","-6212G","-6216G","-6219A","A6251G","A6263G","A6275C","G6280A","A6281C","A6283G","C6289T","G6303A","A6320C","T6325G","A6326G","G6362A","A6376G","C6397T","G6458C","T6460A","A6471C","A6489C","G6572A","G6573A","A6574G","G6605A","C6637T","A6638G","A6646T","A6647G","A6668G","A6669G","-6686A","-6687G","-6688T","-6689A","-6690T","-6691A","G6693A","A6695G","T6719A","C6729T","G6732A","T6733G","A6734G","A6737G","T6760G","A6775C","C6777A","A6780C","G6781T","A6786G","T6787C","C6790A","C6792T","C6797G","A6798G","A6809C","C6812A","G6819A","A6824G","-6828A","-6833A","T6835C","A6837C","C6838A","A6840C","C6843A","A6858G","G6905C","G6906A","A6947G","-6958A","-6961T","-6963G","-6966C","-6968T","-6969G","-6972G","-6973T","-6974A","-6975C","-6976T","-6977T","-6978G","-6979G","-6980G","-6981T","-6982A","-6983A","-6984A","C6993A","-6994C","A6996G","-6997T","A7001G","C7006A","C7008A","T7045A","C7087T","A7089C","A7094G","G7101A","A7107G","A7133G","C7134T","A7148T","A7149G","T7150C","A7152G","T7153G","-7165C","A7181G","T7192C","G7225A","C7266A","A7275G","A7276G","A7277C","A7297G","A7313C","C7325T","C7328T","T7370G","A7375G","C7411T","A7440G","G7501A","G7534A","C7597T","C7603T","C7658G","A7666G","A7673G","A7676G","C7688A","A7690C","C7701G","C7702G","A7722T","G7726A","G7765A","G7790A","A7791G","T7796A","G7801A","C7843T","A7862G","C7874T","T7892G","G7893T","C7912T","A7931G","T7932C","C7935A","A7936C","A7937C","C7939G","A7942G","A7944G","G7965A","C7969A","A7992G","A7997G","C7998A","G8005C","A8011C","C8017G","A8051C","A8108C","A8111G","A8152G","T8168C","A8172G","T8209A","C8213T","A8216G","G8219A","C8232T","G8234A","T8277C","G8330A","C8331G","T8348A","A8375G","A8388G","T8390C","A8405G","G8407A","A8409G","T8414A","C8415A","A8425C","C8440T","A8445C","T8451C","A8455C","C8471A","C8477T","A8484T","C8485T","G8487-","A8489-","C8494A","T8505A","G8506A","C8507G","C8509T","A8531T","G8537T","T8582C","A8584T","G8588A","G8590C","T8600C","A8653G","C8675T","T8701A","A8793G","G8795T","G8805A","C8828A","T8835C","T8847A","A8858C","A8870G","G8875A","G8882A","T8883C","A8885G","T8897C","C8934A","G8942A","T8947A","C8966T","A8970G","G89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K7Q, M50T, V112M, A124S, E138D, E167D, L208I, G283S; RT-p51: I5V, K13N, E40D, K49R, I50V, E204K, K207E, F214L, H221Y, D291E, K311R, D324E, L334P, I341V, P345Q, R395K, K431T, I435T, F440Y; RT-p66: I5V, E6D, K13N, E40D, K49R, I50V, E204K, K207E, F214L, H221Y, D291E, K311R, D324E, L334P, I341V, P345Q, R395K, K431T, I435T, F440Y, M452I, K461R, R463K, V467I, G490E; gp120: K18R, A32S, E59-, N66T, I80V, V106H, N108-, T110-, -115S, -116T, -118R, -119N, -120V, -121G, -122D, -123Q, -124A, I133V, I137V, K141Q, K143Q, R150K, I156L, N157K, N158D, N161S, V170I, D202Q, N206T, K212T, G240K, D251N, N272G, I281V, F289-, Y290-, A291-, T292-, G293-, D294-, H302Q, K307S, T308K, E309A, N311S, N312K, T313I, Q315G, K319Q, Q320K, R322K, -324E, -326N, -327T, N328T, T330-, N335S, G351Q, S365G, N368K, -374T, -375W, -376V, -377K, T380N, K381S, N383D, -384E, T385N, Q412P, K414E, R416K, T427V, N432C, -433R, N435D, T443A, T471N, K474R; gp41: I4L, L8F, L9F, S23A, I24M, K46R, D113E, N114S, M115N, I124V, S125G, Q129N, T133R, N140I, D163S, S165T, I187V, L191F, C197V, I210A, P211H, N212Q, G221E, D230G, T232D, I270V, R277Q, Q290R, L304F, N305D, A306T, A310V, V311I, A343S; nef: I16V, R22Q, T23A, P25T, E28A, A33V, K35Q, E38A, T48L, A49N, C55K, A56V, E63D, E65D, Y81F, G83A, F120Y, R151D, E155K, N162K, C169S, R178K, L198M, F202Y; p17: L46V, E55G, Y86F, I107L, S126N; p2: V7A, T8Q, -10T, -11N, -12V, I13-; p24: I15L, D71E, H87Q, M96I, L111P, P122N, K154R, E180D, L190M, S200T, G225S; p6: L1P, -26Q, K27E, K31T, L38I, T39A, P49L, L50*, S51L; pro: I13V, A16G, D37N, R41K, E60D, E61Q, V63L, E67C; rev: S8N, Y28C, K30P, P31A, N50R, D53H, I55L, Q57E, E68A, E87A, D88G, I102V, C107S, D108E; tat: A21P, Q24K, K40S, S75P, Q76T, T77S, R79G, E86K, S87*; vif: V31I, K36N, L39V, H48N, I51T, E78D, K92R, R95K, G101D, H113N, I124L, N140S, T155P, K160N, Q178R, R181K, T188I; vpr: M19V, P37T, I63T; vpu: Q5T, I18L, G27Y, L34Q, K38R, Q66K"}}}]}]},{"name":"CRF11_cpx_NODE_0000003","node_attrs":{"div":0.07991999999999999,"clade_membership":{"value":"CRF11_cpx"}},"branch_attrs":{"mutations":{"nuc":["A518G","T734C","T1978G","T2206C","T2776C","A5293T","-6175G","T6582G","C6797A","C8296T","T8456A"],"gp120":["N204E"],"gp41":["S101V","N239S"],"p17":["I61M"]},"labels":{"aa":"gp120: N204E; gp41: S101V, N239S; p17: 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I101L, Q136K, L208I, K211R, Y227F, S255N, D256E; RT-p51: D6E, I135T, V202I, K207Q, R211K, Q245K, D248E, R307K, A360T, V372A, E413D, V417I; RT-p66: I135T, V202I, K207Q, R211K, Q245K, D248E, R307K, A360T, V372A, E413D, V417I, V458I, H483Y, L517I, S519N, K527N, K530R; gp120: A2V, D4G, N5K, P57V, N64K, H77Y, -109S, T110S, -111A, -112T, -113A, -114R, -115G, -116S, R138K, L147I, N159S, T172A, K212H, G240E, D251N, P263T, Y290F, K307R, T308A, E309K, Q315Y, -324S, -326S, -327N, N328-, N334A, S336H, I343V, K361I, S365N, T366I, W367R, -368F, -370G, -371T, -372T, -373W, -374E, -375N, -376G, N379T, N383-, T385-, V396I, R397N, K414R, N418V, N420D, L425V, N432V, N435T, R472N; gp41: I4M, A14T, A30V, E49D, L81F, V101N, D125E, Q129H, N195R, C197V, Q213P, E215G, G220E, R231K, T232D, I235V, N251S, H258R, R259H, I270T, T273L, R276H, R277S, E280G, T281A, I321L, Q323R, A325V, I329L; nef: E15D, I20M, P25A, K35R, K39R, -50L, A54D, E62T, G88S, K104Q, E108D, C138T, R151E, E155K, N157T, I168M, C169N, D174E, 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Q66K"}}},{"name":"AF492624","node_attrs":{"div":0.12415999999999999,"accession":"AF492624","clade_membership":{"value":"CRF11_cpx"},"country":{"value":"CM"},"date":{"value":1995.0},"Strain_name":{"value":"95CM_1816"},"LANL_subtype":{"value":"CRF11_cpx"}},"branch_attrs":{"mutations":{"nuc":["A168T","T200C","T201C","A263G","A303T","G317A","C379A","A412G","G413A","A417C","A520T","T525A","G540A","G541A","G542T","A562G","T572C","A605G","G607A","A619G","G762A","A774C","G810A","A860G","G956A","A980G","T992G","A1017C","C1040T","T1063C","C1187T","A1192G","C1211T","C1220T","C1235T","T1238C","A1242T","C1243G","A1278C","C1280A","C1294G","A1307G","G1328A","C1331T","G1394A","T1451G","G1472A","C1511T","T1574C","A1607G","C1756A","G1775-","A1776-","A1777-","A1794G","C1826A","T1828C","A1835G","G1846A","A1857G","G1907A","G1912A","G1920A","A1985C","G1999A","T2041C","T2080A","A2108G","A2113C","A2155G","T2257C","C2281T","A2389G","T2597C","G2686A","T2758C","A2815T","C2828G","G2921A","A2925G","C2960T","A2995G","G3010A","A3037C","C3056T","G3065A","A3066G","G3085A","G3151A","A3196G","G3209A","C3224A","T3225C","C3346T","A3367G","A3388G","A3449G","A3477G","G3484A","T3566C","A3583T","T3755C","C3756A","C3763T","A3768G","G3772A","G3787A","T3820C","T3853C","A3874G","C3892T","C3908T","G3925T","A3973C","A3989G","A3991G","G3997A","G4148A","C4149T","T4198C","G4228A","T4234A","G4252A","A4255G","G4264A","A4376G","A4378G","C4426T","T4441A","A4475C","G4549A","G4553A","C4650A","G4677A","G4689A","A4694C","T4701A","T4702G","G4767C","A4768C","A4774C","A4781G","A4814G","G4835A","C4914T","T4932A","T4976A","A4993C","T5027C","G5059A","G5060A","C5062T","G5086A","G5140A","G5143A","A5164G","G5179A","T5197C","T5263A","A5268T","T5294C","G5359C","A5375G","C5412T","T5424C","T5466C","T5483A","C5487T","T5491C","C5514A","G5538A","C5551T","C5579A","A5601T","C5614T","G5619A","G5635A","T5655C","C5663T","T5688G","A5689C","C5704T","A5717G","A5751G","G5794-","A5795-","A5796-","T5798-","C5801A","C5806T","-5810C","-5811A","A5866C","A5907G","A5921C","G5939A","T6024A","A6059G","T6067C","G6079A","A6157G","G6167A","A6172G","-6180A","-6181T","-6186A","-6189G","-6190C","-6191A","-6192A","-6193C","-6194T","-6195G","-6196C","-6197A","-6198C","-6199T","-6200A","-6201G","-6202C","-6203A","-6204A","-6205T","-6210C","-6213T","-6214G","-6215G","-6216A","-6217G","-6219G","-6220C","-6221C","-6222A","-6223A","-6225C","C6238T","A6275C","A6281C","C6289T","A6311G","A6320C","T6322C","A6323G","A6329G","G6336C","T6337A","G6391A","T6438A","G6463A","G6464A","G6466A","A6489C","C6523T","A6524C","A6525G","C6545T","G6583A","G6593A","G6631A","C6632T","A6639G","A6647C","A6649C","T6694G","A6764G","A6765T","T6766A","G6771A","A6773G","G6774C","A6780T","A6801G","C6807T","A6809G","A6820G","G6821C","A6824G","T6827A","T6829C","-6830T","-6831T","-6832T","-6835T","C6838A","A6840C","A6858G","T6882C","-6963G","-6964C","-6966A","-6968G","-6975C","-6978T","-6980G","A6990G","-6995A","-6996T","-6997A","-6998G","-6999G","C7008A","T7015A","C7019T","G7026A","T7045G","A7096G","G7101T","A7108C","A7113C","A7155G","A7157T","T7159A","-7165A","C7182T","T7400C","G7517A","A7604G","T7624A","G7705A","A7711G","A7782C","T7796A","T7913G","A7942C","G7957T","C8065T","T8067A","C8092A","C8103T","G8105A","G8114C","A8118G","G8168A","G8180A","T8209C","T8210C","G8219A","C8232T","A8263G","A8264G","G8267A","C8268T","A8272T","A8288G","T8348A","C8369A","C8412T","G8418A","A8425C","A8469G","C8477T","A8489G","-8490G","-8491A","C8514T","A8522G","T8597C","G8678A","C8756T","T8786G","A8794G","A8815C","A8844T","T8860C","A8909C","G8945C","A9060T"],"INT":["M50I","I72V","A125I","I201V","N222K","I234L","V260I"],"RT-p51":["I5V","Q245E","V276I","K277R","P321S","D324S","V372I","L377T"],"RT-p66":["I5V","E6D","Q245E","V276I","K277R","P321S","D324S","V372I","L377T","I452V","K461R","S554H","K558R"],"gp120":["K18R","T23P","D29N","P57H","K69E","D105N","-109C","-111N","-112V","-122E","-123K","-124N","K141Q","K143Q","I153V","I156L","N159D","N161T","F195Y","E204K","K212T","K224R","E247K","L260F","E262S","E265H","H280R","D294A","N304V","S306N","K307A","E309I","Q315K","K316R","A318V","K319E","E323Q","-324I","F325E","-326I","-327F","N335S","I343T","-368N","N369-","N379G","E381V","-382G","-384S","P389S","R391K","R416M","N420T","N432K","N434S","N435S","T436K","N437T","T443I"],"gp41":["V72I","D125N","N160T","S165T","L204V","Q213H","R214K","P216A","R218S","F255Y","F263L","A267V","A268T","V271L","E272G","A289T","G293S","A306T","A310V","I321V","A322I","Q323H","I329V"],"nef":["S9R","P24S","E28P","I43V","-50E","E158A","I168L","C169S","M173T","E201D"],"p17":["A15K","K26R","K28Q","E62V","L64I","G69N","K76R","R91Q","K95R"],"p24":["V11I","I15L","V27I","L83M","H87Q","M96L","L111P","K154R","T171C","G183Q","T188S"],"p6":["I21V","-26Q","K33-","T39A","L50S"],"pro":["L10I","I13V","K20R","D37N","R41K","V63L"],"rev":["S8N","L22I","E32Q","A37S","H82N","S86N","C89S","C107Y","G111E"],"tat":["R29K","V36H","P68H","R78T","G83V"],"vif":["H22N","V31I","A35T","K36N","L39R","D61P","H110Y","S116T","S130R","Q136P","R158K","T159V","R167K","G185E","S186N","*193W"],"vpr":["E55V","R85P"],"vpu":["P3S","V10I","A19V","I28L","K37R"]},"labels":{"aa":"INT: M50I, I72V, A125I, I201V, N222K, I234L, V260I; RT-p51: I5V, Q245E, V276I, K277R, P321S, D324S, V372I, L377T; RT-p66: I5V, E6D, Q245E, V276I, K277R, P321S, D324S, V372I, L377T, I452V, K461R, S554H, K558R; gp120: K18R, T23P, D29N, P57H, K69E, D105N, -109C, -111N, -112V, -122E, -123K, -124N, K141Q, K143Q, I153V, I156L, N159D, N161T, F195Y, E204K, K212T, K224R, E247K, L260F, E262S, E265H, H280R, D294A, N304V, S306N, K307A, E309I, Q315K, K316R, A318V, K319E, E323Q, -324I, F325E, -326I, -327F, N335S, I343T, -368N, N369-, N379G, E381V, -382G, -384S, P389S, R391K, R416M, N420T, N432K, N434S, N435S, T436K, N437T, T443I; gp41: V72I, D125N, N160T, S165T, L204V, Q213H, R214K, P216A, R218S, F255Y, F263L, A267V, A268T, V271L, E272G, A289T, G293S, A306T, A310V, I321V, A322I, Q323H, I329V; nef: S9R, P24S, E28P, I43V, -50E, E158A, I168L, C169S, M173T, E201D; p17: A15K, K26R, K28Q, E62V, L64I, G69N, K76R, R91Q, K95R; p24: V11I, I15L, V27I, L83M, H87Q, M96L, L111P, K154R, T171C, G183Q, T188S; p6: I21V, -26Q, K33-, T39A, L50S; pro: L10I, I13V, K20R, D37N, R41K, V63L; rev: S8N, L22I, E32Q, A37S, H82N, S86N, C89S, C107Y, G111E; tat: R29K, V36H, P68H, R78T, G83V; vif: H22N, V31I, A35T, K36N, L39R, D61P, H110Y, S116T, S130R, Q136P, R158K, T159V, R167K, G185E, S186N, *193W; vpr: E55V, R85P; vpu: P3S, V10I, A19V, I28L, K37R"}}}]},{"name":"CRF11_cpx_NODE_0000005","node_attrs":{"div":0.08417999999999999,"clade_membership":{"value":"CRF11_cpx"}},"branch_attrs":{"mutations":{"nuc":["A50G","A605C","G712A","C1235T","T1385C","G1476A","A1841G","A2002G","T2080C","A2113C","G2463A","A3103G","T3139C","T3221G","G3222C","T3252C","C3328T","A3388G","A3643G","G3907A","A4376G","A5094G","T5483A","C5707T","G5803C","C6385T","A6639G","A6767G","G6774A","T6787C","A6800C","G6821A","A6826G","-6996A","A7094G","A7106G","A7155C","C7158A","C7603T","C8047T","C8080A","C8103T","C8146T","A8469G","A8558G","A8794G"],"INT":["I201V"],"RT-p51":["S123N","C376A","I386T"],"RT-p66":["E6D","C376A","I386T"],"gp120":["N160S","E262S","E265K","I305V","K316Q","E323-","-324K","K414E","N418D"],"gp41":["P216A","A267V","T281I"],"p17":["S126N"],"p7":["G4S"],"pro":["I15V"],"rev":["E32K","P67S","P100S"],"tat":["V36Y"],"vif":["T170A"],"vpu":["V13I"]},"labels":{"aa":"INT: I201V; RT-p51: S123N, C376A, I386T; RT-p66: E6D, C376A, I386T; gp120: N160S, E262S, E265K, I305V, K316Q, E323-, -324K, K414E, N418D; gp41: P216A, A267V, T281I; p17: S126N; p7: G4S; pro: I15V; rev: E32K, P67S, P100S; tat: V36Y; vif: T170A; vpu: 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S57G, G283S; RT-p51: I5V, V8I, K49R, E169D, K207Q, L283I, D291E, A376T; RT-p66: I5V, V8I, K49R, S123N, E169D, K207Q, L283I, D291E, A376T, V452I, E516K; gp120: V10I, N52S, D105E, -109C, -111E, -112A, -115N, -116S, R138K, N157D, N159D, T161S, R164K, V170G, V173F, K174T, A176T, K179R, V180L, H188P, K199N, C200R, R201K, N206D, P210A, S215N, T216A, H221R, V227P, Q230P, N234K, E239Q, E241K, V242G, R245K, D251F, T255A, R265A, N272G, K277Q, A291T, G293K, D294V, N304T, S306N, N311K, N312K, T313A, Q315H, T319D, K324E, F325Y, -327N, N328S, K329T, I332N, N334A, G351R, -368N, N369F, -370N, -371D, -372S, -374T, -375N, -376G, -377E, N379D, E381N, -382G, P389L, R391K, K393R, V396I, R397N, G403R, I411V, R416T, D418I, N420Y, -433G, N434T, N435P, T436N, R441I, G445*, K464*, P465S, R472K, K474R, E479Q; gp41: L9V, H53Q, D109S, I118M, N125K, N126D, S157D, D163S, K172R, L204I, F206L, K214E, E215A, G220R, I222T, R231N, T232N, S256C, F263S, I264A, I281T, Y284F, G293S, N305D, A306T, T307I, I309V, A322V; nef: 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Q66H"}}},{"name":"AJ291719","node_attrs":{"div":0.14048999999999998,"accession":"AJ291719","clade_membership":{"value":"CRF11_cpx"},"country":{"value":"FR"},"date":{"value":1999.0},"Strain_name":{"value":"MP1298"},"LANL_subtype":{"value":"CRF11_cpx"}},"branch_attrs":{"mutations":{"nuc":["C44T","G52A","C96T","G112A","A286G","-305A","G325A","G344C","G354A","A398G","A431G","A515T","A516C","A520G","A548G","T572C","T636C","A656C","G683A","C694G","G709A","G716T","G755A","G771A","A776G","G803A","A866G","C1061T","A1073G","G1089A","C1137T","A1292C","G1298A","A1367G","G1418A","T1427A","A1445C","C1446A","A1447G","T1451A","A1461G","G1474A","A1475G","A1476G","A1495G","C1511T","A1580G","G1664A","C1680A","A1733G","-1754C","-1755C","-1756C","G1852T","A1918G","A1985C","G2002A","T2083C","A2131G","A2174T","A2179G","C2199A","C2206T","T2263C","A2311G","T2425C","G2459A","A2462G","C2464A","T2499C","T2527C","A2579T","G2686A","G2699A","T2749C","C2909T","G2921A","G2950A","A3031G","T3045C","C3067A","T3068A","G3085A","C3095T","A3124G","A3145G","A3154G","G3206A","G3208A","A3268G","G3340A","C3352A","A3421G","G3484A","A3490G","T3550C","G3556A","T3589C","T3602C","G3631A","A3733G","T3754C","T3755A","C3756A","A3808G","T3844C","A3866G","G3869A","T3904C","C3908T","A3931G","A3985G","A3989G","C4072T","A4083G","A4084G","G4109A","A4111G","T4234C","A4285G","T4288C","C4426T","G4573A","T4640C","G4677A","G4735A","G4749A","G4764A","G4784A","A4820T","T4932A","A4937C","A4946C","A4951C","C4965T","T4991C","C5006T","T5027C","A5049G","G5143A","A5151C","T5239C","C5280T","T5281C","C5397A","G5415T","T5451C","A5453T","A5462G","A5463G","T5482A","A5483T","T5491C","C5552A","A5581C","G5599-","T5601A","-5603T","A5611G","T5617C","T5636C","T5679C","G5686T","G5687T","C5704T","T5705G","G5711A","T5727A","G5729A","A5760G","-5791G","-5792A","-5793G","-5797T","-5799G","A5906C","A5907G","T5951G","A5952T","T5986C","C6023T","A6136G","C6145T","G6167A","G6170C","A6173-","A6174-","C6175-","A6179G","-6180T","-6181A","T6184C","C6189G","A6192C","-6193G","-6194T","-6198G","-6199G","-6203A","-6204G","-6205A","-6206A","-6207G","-6208C","-6209A","-6210T","-6211G","-6212A","-6214T","-6216A","-6217A","-6220A","-6223G","A6233G","A6249G","T6250G","A6251G","A6262G","A6263G","G6267C","G6269T","G6277T","A6278G","C6281G","A6282T","G6303A","T6306A","A6311G","T6322-","A6323-","A6324-","A6330T","T6331G","G6336C","G6339C","G6346A","A6352T","A6353C","A6354G","C6370T","G6457T","A6461G","G6480A","G6530A","T6551A","G6569A","A6628T","T6634A","A6648T","A6649G","A6686G","-6688G","C6692-","G6693-","T6694-","A6695-","T6696-","-6698C","-6699A","-6700G","-6701A","-6702T","A6714G","G6716A","T6719G","T6745C","A6751G","C6752A","G6767A","A6773G","A6774G","A6776-","C6777-","A6778-","G6779-","A6780-","A6781-","A6797G","C6810T","A6811G","A6824C","C6838A","C6843A","C6859T","T6860A","A6926G","-6956A","-6957G","A6962G","-6963A","-6964G","A6966C","-6968A","-6972A","-6975C","A6985-","A6989G","A6994T","-6997A","-6998T","A7001G","A7002C","C7008A","T7045A","A7063G","A7089C","G7094A","G7102T","C7108T","A7113G","C7124T","A7152C","A7158G","G7166-","A7167-","C7170-","C7171-","C7174T","G7190A","T7222C","G7324A","G7366A","G7391A","A7396G","A7440G","G7441A","T7447C","A7462C","C7474T","A7525T","A7533G","T7603C","T7609C","T7624A","G7640A","A7666T","A7691C","C7692T","G7705A","A7722C","C7747A","A7800G","A7807C","A7822T","A7832G","A7847G","C7942G","G7949A","G7979A","C7998G","G8019A","C8062T","C8065T","T8067G","A8069C","G8070T","G8098C","T8113A","G8130A","G8143A","C8145T","T8153C","C8155T","G8168C","C8169T","A8172T","C8213T","T8278C","G8288T","T8321C","A8323C","C8342G","A8367G","C8413T","T8460C","T8461A","G8479C","A8484-","C8488A","C8490-","A8491-","A8493-","C8494-","T8505A","G8508A","C8510A","G8528A","G8558A","G8561A","T8600C","T8829A","T8835C","C8840T","G8852A","A8874G","T8903C","G8917A","G8945C","G8974A","T9072C","C9073T","C9129T","A9135G","G9137A","C9181T"],"INT":["I31V","V32I","I72V","K103R","V112M"],"RT-p51":["T27S","T35K","E122K","N123E","I135T","S162C","V202I","P272S","V276I","V317A","D324E","L325I","V371I"],"RT-p66":["T27S","T35K","E122K","S123E","I135T","S162C","V202I","P272S","V276I","V317A","D324E","L325I","V371I","S554N"],"gp120":["K18R","Y33V","P57F","D105N","V106L","-111V","-112T","-119M","-120I","-121E","-122E","-123K","-124G","K127E","N132R","I133V","I137V","R138T","D139Y","K141N","K142E","Q143V","R150K","L151H","I153V","N158V","E162-","N167R","R201N","K203E","G209E","V226I","L233I","E239K","R265M","S278G","R280Q","Q287R","A288T","F289V","D294A","Q300K","V305I","K307G","T308W","E309K","W310-","N311-","Q315E","T319M","K324Q","N335S","S336T","N358D","N369-","-374W","Q412P","E414K","R416S","D418N","N420S","N432P","-433N","N435T","N437S","D446N","K457R"],"gp41":["A30T","K46R","R74S","K77R","V101I","D109N","D113N","E119Q","E121D","T130L","N140T","D148E","N166S","I177V","I182V","H213Q","A216T","G226S","T232S","S239N","N251S","F255C","S256L","L265F","R276H","Y284L","A289L","Q290L","L304F","V329F"],"nef":["S9G","P24R","F40H","S46T","T48-","Q50-","T51-","C55S","A56T","C163S","R178G","R192K","E201D"],"p17":["V7I","M61L","E62G","Q90H","A120G","S125N","K127N"],"p2":["-10V","I13-"],"p24":["A14T","I15M","L83I","G120S","E187D"],"p6":["L1I"],"p7":["R3K","S4G","K10R"],"pro":["Q18H","V63L"],"rev":["L13I","K32E","S34N","R44K","P72S","Q74P","D84H","C89S","D99N","I102T","P103S","C107S"],"tat":["N7K","Q13H","Y26F","Y36I","S59Y","I69L","T78R"],"vif":["V31I","R50K","V55I","G60R","S116T","E117D","K122T","H127Y","T155A","S186N","M189L"],"vpr":["N16T","A59V"],"vpu":["I2V","V10A","G27F","L33W","R35K","D40E","R41K"]},"labels":{"aa":"INT: I31V, V32I, I72V, K103R, V112M; RT-p51: T27S, T35K, E122K, N123E, I135T, S162C, V202I, P272S, V276I, V317A, D324E, L325I, V371I; RT-p66: T27S, T35K, E122K, S123E, I135T, S162C, V202I, P272S, V276I, V317A, D324E, L325I, V371I, S554N; gp120: K18R, Y33V, P57F, D105N, V106L, -111V, -112T, -119M, -120I, -121E, -122E, -123K, -124G, K127E, N132R, I133V, I137V, R138T, D139Y, K141N, K142E, Q143V, R150K, L151H, I153V, N158V, E162-, N167R, R201N, K203E, G209E, V226I, L233I, E239K, R265M, S278G, R280Q, Q287R, A288T, F289V, D294A, Q300K, V305I, K307G, T308W, E309K, W310-, N311-, Q315E, T319M, K324Q, N335S, S336T, N358D, N369-, -374W, Q412P, E414K, R416S, D418N, N420S, N432P, -433N, N435T, N437S, D446N, K457R; gp41: A30T, K46R, R74S, K77R, V101I, D109N, D113N, E119Q, E121D, T130L, N140T, D148E, N166S, I177V, I182V, H213Q, A216T, G226S, T232S, S239N, N251S, F255C, S256L, L265F, R276H, Y284L, A289L, Q290L, L304F, V329F; nef: S9G, P24R, F40H, S46T, T48-, Q50-, T51-, C55S, A56T, C163S, R178G, R192K, E201D; p17: V7I, M61L, E62G, Q90H, A120G, S125N, K127N; p2: -10V, I13-; p24: A14T, I15M, L83I, G120S, E187D; p6: L1I; p7: R3K, S4G, K10R; pro: Q18H, V63L; rev: L13I, K32E, S34N, R44K, P72S, Q74P, D84H, C89S, D99N, I102T, P103S, C107S; tat: N7K, Q13H, Y26F, Y36I, S59Y, I69L, T78R; vif: V31I, R50K, V55I, G60R, S116T, E117D, K122T, H127Y, T155A, S186N, M189L; vpr: N16T, A59V; vpu: I2V, V10A, G27F, L33W, R35K, D40E, 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L83V, I91A, S109G, T110N, K154R, T178S, A207V, G225S; p6: I21T, A22T, L38I; p7: S4G, W37*; pro: L10V, T12P, I13V, I36M, D37S, R57K, E61D, V63T; rev: E10A, V16A, N26S, K32A, S34T, R41Q, I52L, D53H, Q74P, D99E; tat: V4G, P6I, E9D, K29R, Y36H, R52W, T77A, T78S, K80N, S87P; vif: D14A, G60E, D61E, A62D, E63M, L91R, G101E, Q136P, H139R, T157K, A170T, H183R, S186N, M189V; vpr: N16S, S94R, P96Y; vpu: P3T, Q5R, I6T, I17L, V20I, V21I, V26A, K32R, Q36H, I39-, I43-, D44R, R45I, I46-, R47-, E48-, 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E55K, Q59P, M61I, E62K, Q65K, C87W, Q90S, I92V, V94G, D96E, S111N, A118G, A120T, K127Q, V128G; p24: A14S, I15M, R18K, E35G, G116A, V148T, K154R, A194S, S200N; p6: L50S; p7: G8E; pro: V15I, K20R, E35G, K45R, V77I; rev: T14A, I18V, Y28H, K32T, S34N, R44K, T62S, R66G, E68A, R80K; tat: E2D, N64S, L74S, P75S, T78N, K80E, E85K; vif: H27Y, V31N, A35T, L59V, E117D, R132K, A137T, N140T, K141Q, T155P, T159P, G185E; vpr: L22V, E25D, P37T, E55T, I61V, Q85P, A93S; vpu: I18L, L33R, K37R, A50E, 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I101L, V126M, N134G, T136K, K211R, I234V, I268L, R269K, D270H; RT-p51: T35V, K64R, V106I, E122K, D248E, K281R, P294S, A297E, K311R, E324D, A359C, V365I, R366K, V372M, S377T, K388R; RT-p66: T35V, K64R, V106I, E122K, E207A, D248E, K281R, P294S, A297E, K311R, E324D, A359C, V365I, R366K, T369A, V372M, S377T, K388R, E404D, R461K, I467V, Q509R; gp120: A2V, K3Q, E4G, P15S, D19E, V37A, I57L, E59D, K69R, V73A, K93R, L97F, -105D, -106V, -109T, -111R, N112I, N113H, -114D, -115S, -117N, -118T, -122T, K123T, G124E, V144L, H145Q, Y149E, K150S, I156M, N158K, N159S, T160S, V180T, Y189F, N204K, K224R, Q230H, R245K, A253T, S272F, V279-, S280-, I281-, G284-, P285-, G286-, Q287-, A288-, F289-, Y290V, T292L, D294P, H302Y, T308K, N312G, A318V, R322G, K323R, -326N, I332N, K334Q, S336P, V343I, N358D, T360K, -368N, N369K, -370S, K372N, -373G, -374T, -375W, -376T, S377K, -381T, -382G, -383E, -384T, T385G, P389Q, M406I, V414I, N416Q, K418E, L424I, G430R, G431H, N433H, N434T, G436E, E438-, T439-, D446N, R448K, S453N, Q462E, K472R; gp41: M7L, Q29H, D109E, E110A, N114K, D129K, A189T, L191F, T208I, P219L, D230G, R231K, D232S, N239S, S256L, R261K, F263C, V264A, H269R, S270T, L290Q, V311T, V322A, L330I, F340A, L345Q; nef: K7Q, I10P, R19K, T23A, S45N, S46N, E64D, Y102W, Q105K, Y135F, F139L, Y143F, C169S, Q170L, K192R, I194V, M198K; p1: P7S, S8P; p17: K26R, Q28K, L31M, T53A, E55D, Q58L, G62R, K69Q, Y79F, I107V, S111R, A119E, K120-, D121-, T122-, N124S, V128A; p2: A11V, A12T; p24: Q4H, I15L, V27I, P86Q, P92A, I96M, D98E, S120N, D187S; p6: S3N, F15L, F17I, G18M, I21M, P23S, S24Y, P30L, T39V; p7: S4G, R10K, T12I, K41R; pro: P39Q, K57R, Q61E, V63T, E65D; rev: S5N, G7D, V16I, Q24K, R50E, E57K, I59V, T68A, F73L, Q74P, I78L, G99R; tat: I8L, L36H, S62N, P70Q, K71E, N80D, P84S; vif: V7G, V31K, R36K, R37G, F39H, N47H, R50K, H73Q, E78D, E134D, Q136P, K141Q, T159I, P162S, V170T, H192Q; vpr: L20I, H45Y, E58V, R85P, S93P, S96P; vpu: Q2I, A3S, E5K, I6T, V7I, V10A, I17L, K38R, I43L, D48E, E58D, K66R, W77G, G79D"}}},{"name":"CRF27_cpx_NODE_0000001","node_attrs":{"div":0.09158999999999999,"clade_membership":{"value":"CRF27_cpx"}},"branch_attrs":{"mutations":{"nuc":["T3170G","G6466T","G6779C","C8415G"],"RT-p51":["Q334L"],"RT-p66":["Q334L"],"gp41":["E137K","A267L","A268G","V271S","E272L","L273K","L274G","G275L"],"p17":["Q90R"],"rev":["C85-","S86-","E87-","D88-","C89-","G90-","T91-","I102T"],"tat":["Y47H"]},"labels":{"aa":"RT-p51: Q334L; RT-p66: Q334L; gp41: E137K, A267L, A268G, V271S, E272L, L273K, L274G, G275L; p17: Q90R; rev: C85-, S86-, E87-, D88-, C89-, G90-, T91-, I102T; tat: Y47H"}},"children":[{"name":"MN116204","node_attrs":{"div":0.13843,"accession":"MN116204","clade_membership":{"value":"CRF27_cpx"},"country":{"value":"CD"},"date":{"value":2003.0},"Strain_name":{"value":"CG_0077_01"},"LANL_subtype":{"value":"CRF27_cpx"}},"branch_attrs":{"mutations":{"nuc":["T128G","G130C","A132T","C134-","T135-","A136-","G137-","A138-","G139-","A140-","T141-","C142-","C143-","C144-","T145-","C146-","A147-","G148-","A149-","C150-","C151-","T153-","T154-","T155-","T156-","A157-","G158-","T159-","C160-","A161-","G162-","T163-","G164-","T165-","A168-","A169-","A170-","A171-","T172-","C173-","T174-","C175-","T176-","C185G","G186T","C187T","C189-","G190-","T200C","T201C","-214G","A216G","A426C","G452A","C471A","C503A","T508A","C516A","C539T","C558T","A562G","T572C","C603A","G614T","A656G","A664G","-694T","G696A","C698T","C713T","G837A","T852A","A891T","C904T","G911A","A945G","T947C","G956T","A978T","C988A","T1001C","C1005G","G1016A","A1025T","G1030C","G1031A","G1064A","C1065G","A1066C","G1077A","C1078G","G1109A","T1238C","T1253A","A1271T","A1277G","C1292T","A1359T","C1406A","A1418G","G1442A","C1444T","T1446A","C1492A","A1544G","G1619A","A1656C","T1679C","G1691A","T1741C","G1742C","A1743-","C1744-","C1745-","C1768T","T1783C","C1831T","G1835A","A1882T","A1927G","A1966T","G1968A","G1972A","A1981G","A2007G","G2074A","A2380C","A2403G","A2463G","G2548A","T2579A","C2589T","C2615A","A2626G","G2682A","G2686A","G2693A","G2704A","C2715A","A2809G","A2821G","G2833A","A2869G","T2905C","C2909G","A2918C","G2951A","G3010A","A3103G","C3139T","G3193A","A3200G","G3206T","A3279G","A3307C","A3334G","T3399C","T3412C","G3463A","G3493A","C3589T","G3686A","A3703G","G3718A","G3756A","A3769G","G3825A","C3857A","G3859T","A3866G","A3876G","T3904C","G3907A","G3925A","A3955C","A3985G","T4009C","C4021A","A4036G","G4145A","C4146G","G4268A","C4270T","A4387G","G4388-","C4389-","A4393T","G4394T","A4395G","A4397T","C4400T","A4401G","A4403T","A4406-","A4407T","A4408T","A4498G","T4585G","T4606G","A4658G","T4701C","T4702G","A4725T","A4737G","A4804T","G4838A","G4864A","A4871G","T4907C","G4913A","C4919T","T4932G","G4969A","C5034T","C5050A","T5072C","T5073C","G5099A","G5176A","A5223T","G5236A","A5246G","G5269A","A5277G","C5342T","A5352G","T5354G","A5355G","T5382G","G5415A","T5430C","A5461C","G5462A","G5463A","G5468C","T5484A","G5526A","A5527C","A5533G","C5536A","C5539A","G5557A","G5558A","A5574G","G5599A","C5602A","-5603A","G5614A","C5615A","G5620C","A5629G","A5644G","A5659T","C5679T","T5684C","C5704T","T5705G","T5708C","A5716C","A5720G","-5797T","-5798T","-5799G","T5800G","T5801C","G5802A","G5803A","C5804A","A5806C","G5808T","C5833A","G5842A","G5843T","C5869A","G5907A","T5911A","G5915A","A5916C","C6004T","C6007T","A6019G","C6026A","A6030G","A6060C","A6073G","G6079A","C6097T","A6136G","A6159C","A6167G","T6169G","-6174A","-6175G","A6182G","C6183G","A6186C","A6194G","T6201C","-6208A","-6209A","-6210T","-6211A","-6212A","-6213C","-6214A","-6215A","-6216T","-6217G","-6218A","-6219T","C6230G","A6233C","A6268T","A6281C","G6284A","T6295C","C6305G","G6311A","A6313G","C6317T","G6323A","A6326G","T6328G","A6330C","-6333T","T6334A","A6335G","A6336G","T6337G","T6340G","A6394G","T6418C","T6427A","C6446T","G6463A","C6469T","A6471C","C6496T","G6532A","G6550A","T6562C","C6599A","G6611T","C6612T","A6616G","C6618A","T6643G","A6647C","A6648C","A6653G","A6654T","C6667T","G6681T","A6683G","A6686G","C6758T","G6774C","A6776G","A6780T","G6781A","G6788A","A6789C","T6797G","A6801G","G6803A","G6809A","C6812A","A6818G","A6820C","C6827A","G6829-","C6832A","C6850T","A6855G","T6860G","A6877G","G6905A","T6916C","G6935C","A6937T","A6944C","A6957C","A6989G","C6993G","-6995G","-6996A","-6997C","-6998A","-6999G","-7000A","-7001A","-7002A","-7003T","-7004G","-7005A","-7006C","-7007A","-7008C","-7009T","C7014T","G7026A","A7036G","G7040A","A7044G","C7045A","G7054A","C7078T","A7090G","T7095C","T7099C","A7100G","G7106A","C7127A","G7142A","G7146C","A7148G","A7149G","A7158G","A7163T","T7192C","G7309A","T7604A","C7605T","T7606G","T7622A","T7624A","A7633C","C7651A","T7666G","A7688G","A7696T","A7701G","G7709A","G7712A","A7744G","G7753A","C7792A","A7800G","T7801A","T7825C","A7826C","T7827A","A7834C","G7835A","G7873A","T7876G","A7937C","A7944C","G7947A","A7948C","G7961A","A7964G","G7992A","G8019A","C8047T","G8050A","C8065T","G8079A","C8080A","T8092A","G8141A","A8154T","T8159G","G8170A","T8197C","T8203C","T8205C","A8222G","G8255A","A8263G","G8264A","G8267A","A8288G","A8297G","G8308A","T8332A","C8386A","G8388A","G8402A","C8406A","C8412G","T8414A","C8419T","A8420T","T8426A","T8451C","C8471A","T8501A","C8514G","A8534T","C8552T","G8554A","C8609T","C8640A","A8642G","A8647G","C8648G","A8652C","T8740A","T8770A","A8793G","A8798G","G8805A","C8825T","C8831A","A8859G","G8864C","G8868A","A8869C","A8873G","G8875A","G8894A","G8917A","T8923G","G8945T","C8993T","C9108T","T9109G"],"INT":["S17N","L28I","I31V","K34R","M50I","A124S","V165I","I204M","A205-","K211-","D270E"],"RT-p51":["K103R","D123S","C162S","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S17N, L28I, I31V, K34R, M50I, A124S, V165I, I204M, A205-, K211-, D270E; RT-p51: K103R, D123S, C162S, T165I, Q174K, G196E, A200T, A207D, P272A, K275Q, A286T, V371L, K395R, V435A; RT-p66: K103R, D123S, C162S, T165I, Q174K, G196E, A200T, E207D, P272A, K275Q, A286T, T369A, V371L, K395R, E404D, V435A, V531I, S554N; gp120: N5E, R18K, D19E, D21T, L58M, E59G, K69T, N102T, -105E, -106A, -107K, -109N, T110G, -111T, -114A, -115T, -122V, L126V, K127Q, K138N, K143Q, V144I, K150R, L151V, V153M, P155S, N158E, N159T, T160I, N161G, N206T, L249I, A253F, T255N, K265P, N267V, R276I, K277E, S278G, A288V, S291R, H302Y, N306S, R307A, T308E, E309L, N312T, Y315E, K316R, V317I, A319T, Q320K, R322G, L325I, K334R, S336A, I341M, G351R, E361P, N364H, N369-, -373N, -374D, -375S, -376D, N378H, T380W, -381M, -382K, -383N, -384D, T387I, R391K, V396I, N397R, V414A, N416E, L425I, G430S, G431P, N432G, N435S, T437S, K472R; gp41: S101M, S107T, E110D, D121E, D129E, E133G, D163E, N166R, I175Q, V178I, H209L, N212H, E214A, G215D, G220R, R221G, E225G, N251S, R259Q, F263L, E280K, Y284L, W286G, I301T, V318I, V321I, V322I, I329V, I332V; nef: A15E, V16I, M20I, T23A, P24E, P25G, A26-, A27-, D28-, G29-, N51T, R71K, V85F, L100M, Y102W, K104Q, E108D, K151E, E155K, S163R, M173V, E174D, E176T, R178K, I194R, E201D; p1: N9H; p17: L61I, L75F, K76R, Y79F, I107M, N110S, E118A, K120M, D121N; p2: A7V, S8T; p24: V36I, S41T, T54S, T58I, T72A, E75D, P86Q, P92A, R100T, Q112A, A116R, E180D, T210S, S225G; p6: I21T, T22P, P23S, S24P, P25-, P30L, T39A, S51L; pro: V13I, E65D, K70R; rev: R4N, S8R, A15T, K20R, K30T, R32S, T34P, R38Q, K39R, P67S, C82S, G98E, V104G, S106P, A108T, *117Q; tat: D2E, R29Q, C31S, K51Q, R53G, Q54K, G61N, S73P, I74L, Q76H, N80T; vif: V7G, F39R, N47Y, I51V, H73L, R93K, S116A, Y127H, R128K, T151A, T155N, T159I; vpr: H40L, N48D, E58G, I83V, I84V, S93A; vpu: Q2I, A3N, E5Q, S8G, I13V, I18L, V19A, V26A, L33W, L34S, K37Q, K38R, L76I, G79I, N80D"}}},{"name":"AJ404325","node_attrs":{"div":0.13047999999999998,"accession":"AJ404325","clade_membership":{"value":"CRF27_cpx"},"country":{"value":"CD"},"date":{"value":1997.0},"Strain_name":{"value":"97CDKTB49"},"LANL_subtype":{"value":"CRF27_cpx"}},"branch_attrs":{"mutations":{"nuc":["T355A","A369C","G394A","G395T","G428A","C512T","C539T","T560C","T571A","A661G","C669A","C688A","-694A","C700A","A701G","A706T","G709A","C719T","G770A","T777A","C974T","T979C","A1002G","C1013G","A1025C","C1088T","G1090A","C1094T","G1199A","T1253A","A1263T","G1339A","C1350T","A1367G","G1394A","A1400G","G1404A","A1424G","G1430A","A1445C","G1498A","A1567G","A1580G","C1613T","A1701T","G1725A","A1740G","G1760A","C1782G","T1790C","G1794A","A1804G","G1852A","G1857A","A1903C","G1968A","C1993A","G2074A","T2101C","T2104C","A2140G","T2171C","A2191G","A2311G","A2498G","G2518A","T2536C","A2563C","G2610T","T2657C","G2675C","G2686A","A2713G","G2714A","G2725A","A2755C","A2815G","C2828A","C2839A","G2980A","G3004A","G3053A","A3130G","A3230T","G3250A","A3292G","T3450A","G3477A","G3544A","C3545T","A3592C","T3613A","C3623T","A3655G","A3724G","A3727T","A3733G","G3770A","C3787T","G3808T","G3825C","C3857T","A3934G","G4046A","T4085C","C4132A","G4145A","T4165C","T4216C","T4282A","C4396T","A4555C","G4581A","G4644A","A4646T","C4674T","G4677A","A4697G","A4774T","A4784G","G4829A","G4859A","A4861G","A4900G","T4912C","C4965T","C4976T","G4981A","T4991C","G5030A","C5034T","A5056G","T5062C","G5086A","A5096G","A5134T","A5187C","G5226A","C5242T","C5294T","A5296G","C5333T","A5336C","G5357A","C5397T","T5436A","G5463C","T5472C","C5478T","T5484G","G5538A","A5545G","A5547G","G5548A","G5599-","-5603T","A5611C","T5612A","T5658C","C5663T","G5699A","A5717G","T5731A","T5807G","-5809C","-5810T","-5811T","T5836G","T5844C","G5845A","A5896G","T5929C","A5935C","G5954A","A5955C","C6004T","T6134C","C6139T","C6145A","C6160T","A6173-","A6179G","A6180C","T6181A","C6184A","C6190T","A6191C","-6208A","-6209A","-6210T","-6211G","-6212A","-6213C","-6214A","-6215A","-6216C","-6217A","-6219T","A6253G","A6275C","C6289T","G6303A","C6318A","A6324G","A6329G","-6333C","A6349G","A6352C","T6395A","T6427C","C6446T","A6465C","G6526A","G6547A","G6566T","A6578G","A6584G","C6591T","G6605A","G6638A","A6648T","A6684C","C6721A","A6723T","T6724C","A6725T","G6726A","A6727T","C6729G","G6732C","G6771A","G6774A","A6777C","A6785G","T6787G","A6799T","T6815C","-6830A","-6831A","C6835G","T6837G","G6838C","A6842T","A6848T","T6851-","T6852-","T6853-","G6856A","G6905A","G6906T","A6907G","G6935A","C6938T","A6959G","-6961T","-6962A","-6963C","-6964C","-6965A","-6966C","-6967T","-6968A","-6969A","-6970G","-6971G","-6972G","-6973C","-6974A","-6975G","-6976C","-6977A","-6978A","-6979T","-6980G","-6981A","-6982G","-6983A","-6984C","A6985C","A6990G","C6991T","A7033G","A7065G","C7078T","A7090T","A7102T","A7107C","A7136C","C7145G","T7172C","G7190A","A7216G","T7217C","C7250T","G7269A","G7276A","G7291C","T7321C","G7366A","A7402G","A7471G","C7474T","A7540G","C7597T","T7630G","A7646C","G7668A","A7689G","A7690C","C7710T","G7712A","C7747T","G7753A","G7807A","C7843G","T7866G","T7875G","C7913G","C7926T","T7929A","A7948T","G7952A","A7971G","G7977A","T8007C","A8014G","T8016C","G8019A","C8037T","G8050A","G8055A","C8065T","C8080A","C8165A","T8167C","G8173A","T8176C","A8184G","G8328T","A8342C","A8348G","T8366A","G8387T","G8405A","G8407A","C8416T","A8458G","A8469G","C8480A","G8490A","C8494A","G8526C","T8595G","T8597C","C8609T","T8644C","T8770A","A8793C","G8814A","A8827G","C8828T","C8832T","G8846A","A8869G","A8873C","A8874G","G8882A","T8887A","A8892G","A8893T","G8917A","A8922C","T8935C","T9028G","C9181T"],"INT":["E11D","S17T","A91T","S119R","A124T","R269K"],"RT-p51":["D123N","I135V","R172I","Y188H","E194Q","A207T","K220N","Q245K","D248E","D320N","A369T","S379C","D404E"],"RT-p66":["D123N","I135V","R172I","Y188H","E194Q","E207T","K220N","Q245K","D248E","D320N","S379C","I452K","R461K","P510S","V559I"],"gp120":["N5D","E34T","-109A","T110N","-111A","N112T","-114N","-115H","K141Q","P155Q","N157G","N159D","S181T","N204T","A238S","I242V","I244V","S246F","D251N","E262K","K265I","K277T","Q287R","F289G","Y290D","S291I","T292I","G296-","D297-","I298-","R307E","E309Q","N311E","N312D","M328K","T330S","I331S","G351M","E361T","-368N","N369D","-370T","-376G","S379E","-381N","-382S","Q404R","R412S","K418A","F440L","D446N","E479D"],"gp41":["D109E","M115L","R122K","D129S","T136V","F188C","L191C","L204V","T208I","D217N","E223G","D230G","I235T","V238A","A245V","R276K","Y284H","L288I","Q294R","V307I","R342I"],"nef":["S8R","R22Q","P25V","K39R","I43V","S46R","A50T","V58L","E62Q","I101T","E108D","E133V","K151Q","E158K","N162S","M168I","E176G","E177D","R178G","M182K","K184V","I194L","M198T"],"p17":["V7E","K12Q","R20H","L31I","I46L","Q58L","K76Q","D93E","K109R","Q112K","T122K","N124I","S125N"],"p24":["S16T","L83T","I91V","S120N","T178S","R203K","P207S"],"p6":["T8S","G16R","I21V","P35V","K42R"],"p7":["Q9P","R11K","K34R"],"pro":["R20K","E35D"],"rev":["S8N","Q11R",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E11D, S17T, A91T, S119R, A124T, R269K; RT-p51: D123N, I135V, R172I, Y188H, E194Q, A207T, K220N, Q245K, D248E, D320N, A369T, S379C, D404E; RT-p66: D123N, I135V, R172I, Y188H, E194Q, E207T, K220N, Q245K, D248E, D320N, S379C, I452K, R461K, P510S, V559I; gp120: N5D, E34T, -109A, T110N, -111A, N112T, -114N, -115H, K141Q, P155Q, N157G, N159D, S181T, N204T, A238S, I242V, I244V, S246F, D251N, E262K, K265I, K277T, Q287R, F289G, Y290D, S291I, T292I, G296-, D297-, I298-, R307E, E309Q, N311E, N312D, M328K, T330S, I331S, G351M, E361T, -368N, N369D, -370T, -376G, S379E, -381N, -382S, Q404R, R412S, K418A, F440L, D446N, E479D; gp41: D109E, M115L, R122K, D129S, T136V, F188C, L191C, L204V, T208I, D217N, E223G, D230G, I235T, V238A, A245V, R276K, Y284H, L288I, Q294R, V307I, R342I; nef: S8R, R22Q, P25V, K39R, I43V, S46R, A50T, V58L, E62Q, I101T, E108D, E133V, K151Q, E158K, N162S, M168I, E176G, E177D, R178G, M182K, K184V, I194L, M198T; p17: V7E, K12Q, R20H, L31I, I46L, Q58L, K76Q, D93E, K109R, Q112K, T122K, N124I, S125N; p24: S16T, L83T, I91V, S120N, T178S, R203K, P207S; p6: T8S, G16R, I21V, P35V, K42R; p7: Q9P, R11K, K34R; pro: R20K, E35D; rev: S8N, Q11R, T34S, R35Q, S56G, S106H, S107P, V109I; tat: R29S, T57A, A58T, N80V; vif: A20T, H30Y, V31I, E63V, K92R, Q105R, I109T, R132K, T151A, K157R, R167K, H183L; vpr: N28T, G41D, Q77H; vpu: R31K, K37R, L42I, K66R, W77G"}}}]}]},{"name":"results/subtype_trees/CRF13_cpx.nwk","node_attrs":{"div":0.09082,"clade_membership":{"value":"CRF13_cpx"}},"branch_attrs":{"mutations":{"nuc":["G10A","C96T","A133T","-166G","-167G","T213C","G256-","T258C","A261G","A286G","G378A","A398G","G455A","A461G","G495A","C503T","A518G","A527G","G534T","A540C","A557G","A654G","T655C","-694G","C698T","A699G","C700A","G712A","C722T","A869G","C872T","A1002C","T1052C","G1077A","T1229C","T1280C","G1430A","G1493A","G1495A","T1646C","A1657G","G1691A","A1770-","A1771-","G1772-","G1773-","A1774-","G1794A","T1797G","T1828A","A1840G","G1848A","G1858A","T1864C","G1898A","A1920G","C1979A","A1981C","A1984G","T1986G","T1987C","T1997G","G1998A","T1999G","G2027A","G2155A","T2206C","C2281T","G2530A","A2542G","T2632G","C2635T","C2694A","A2698G","A2699G","G2707A","A2710G","G2714A","A2716G","A2727G","C2749T","T2776C","C2831T","G2914A","G2998A","G3016A","C3023T","A3034T","A3046C","T3059G","C3060A","A3061G","G3094A","C3100A","T3132A","A3167G","T3181A","T3197C","A3217G","A3218G","A3220G","A3229G","C3252T","A3268C","A3276G","A3293G","C3294T","A3334T","G3340A","T3368C","A3378G","A3387C","G3391A","G3398C","T3414A","T3445A","C3449T","A3457G","G3483A","G3491A","T3517C","A3630G","G3664A","T3668C","A3676G","C3751T","G3756A","A3772G","T3793A","A3866G","C3892T","T3904C","C4138T","G4156A","C4204T","T4391A","T4405A","G4549A","A4692G","A4784G","G4818A","A4847T","C5050A","T5062C","T5084G","G5086A","G5087A","G5131A","A5186C","C5215T","A5352G","A5355G","G5363A","G5372T","C5397A","A5471T","C5478T","T5490C","T5491A","A5495C","G5496A","C5551T","G5557A","A5563C","C5579T","A5594G","G5599T","C5602T","A5613T","A5621T","G5711A","A5718G","G5729A","A5734T","T5736G","A5748G","A5751G","C5769A","A5781G","C5797T","-5799G","T5801C","G5802A","G5803A","A5806C","G5808T","-5817A","-5824A","C5827T","T5860C","C5884T","A5896T","G5963A","T6024A","C6026T","A6030T","A6031C","A6037G","T6064C","C6067G","A6076G","G6086A","A6087C","G6088A","T6101C","G6110C","A6132G","G6133T","T6148C","T6154C","C6160T","T6169C","-6174C","-6175C","T6178C","T6181C","T6187C","T6193C","-6225A","T6246A","C6247T","A6253G","A6263T","A6273G","A6276G","G6277A","G6290T","G6311A","T6325G","A6326G","A6327G","T6328A","G6346A","C6347T","A6354G","T6395A","T6427C","A6430G","A6464G","A6490G","T6523C","G6532A","T6562C","G6577A","T6582A","A6583G","T6598C","A6602T","G6605A","C6613T","A6636C","G6638A","A6640G","T6641C","A6648G","C6667T","A6742G","T6766C","T6769C","G6773A","C6810A","C6824T","-6835T","A6840C","A6854G","A6855C","C6857A","C6858A","A6859T","T6860C","C6861A","C6874T","C6875T","T6949C","-6952T","A7015T","A7033G","A7037T","C7045T","G7088C","T7099A","A7101G","A7102G","T7114C","G7132A","G7160A","C7266G","A7290C","G7309T","A7373C","A7426G","G7428A","T7433C","G7453T","C7469A","A7477G","G7517A","G7519A","C7561A","C7597T","T7609C","T7625C","T7627G","G7628A","A7629G","T7636A","A7655C","G7658C","G7668A","A7688G","A7690C","C7691A","A7701G","A7741G","A7763C","G7790A","C7792T","T7801A","C7843T","T7888G","C7935A","A7936C","A7937C","C7951A","C8171T","G8173A","A8184G","G8194A","A8208C","A8221T","C8242G","A8263G","T8268G","G8276A","C8277T","T8281G","C8286G","A8311C","T8323C","T8337A","A8342C","A8348T","T8375G","T8384A","G8387T","C8406A","G8424A","A8425C","A8469G","C8480T","C8485T","C8491-","A8493-","T8495-","C8500A","T8501G","T8507C","G8516A","G8537A","T8567A","C8603T","A8604G","T8675C","C8690T","A8754T","C8755G","C8756T","A8792C","G8795A","A8804G","G8822A","A8829T","T8843A","T8847A","G8864T","G8882A","G8915A","C8966A","A8970G","G8971-","G8981A","C9073T","C9078T","C9181T"],"INT":["D6E","I31V"],"RT-p51":["A200E","I202V","E207K","K211R","S322E","D335E","F346Y","R358G","I375V","T386I","Q394R","T400V","E413D","Q428R","K431T","V435L","F440Y"],"RT-p66":["A200E","I202V","E207K","K211R","S322E","D335E","F346Y","R358G","I375V","T386I","Q394R","T400V","E413D","Q428R","K431T","V435L","F440Y","R463K","V466I","K512R"],"gp120":["E59G","E78T","E86Q","K93S","-105N","-107T","F131Y","I133M","I137L","K140R","K141R","A146S","D157E","N158G","N167S","S181T","N204E","I243K","I249F","T250S","D251N","N261T","S263P","K265R","H280R","H324Y","N334A","P335N","S336H","-370D","-373S","-376G","I395F","T416R","K418E","T471S","K474R","E479T"],"gp41":["I24L","S42N","Q56K","V72I","Y108Q","D109S","I118L","E119Q","R122K","N133R","K154Q","D163N","N166K","N195K","P211H","N212H","N239S","N251S","Q294R","V322G","A325I","A328G","L345Q"],"nef":["E28T","I43V","T48M","A49-","A50-","P53E","A56T","S88G","I133V","T138C","C169S","E174D"],"p1":["N9S"],"p17":["L31M","A54T","G62R","A67S","K69Q","I107A","K120R","T122E","S126N"],"p24":["A116T"],"p6":["K31-","D32-","S40A"],"p7":["Q9P","R10K"],"pro":["G17E","E34K","K41R","Q61N","I62M","L63S","C67E","V77I"],"rev":["K30P","A108V","V109I","E116N"],"tat":["N7K","Y32F","L39I","K40T","T57R","P59S","G61S","K63Q","P68L","I69V","Q76T","P81Q"],"vif":["K36G","E78K","T155N","R167K","G182D"],"vpr":["N28H","I83V","I84V"],"vpu":["Q2N","E5Q","D40E","R41K","I43L","-73N","-74F"]},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E6D, I101L, G163T, E256D; RT-p51: K39Q, E40D, K49R, A122V, I135T, P176Q, E177N, P243S, S251I, E335G, R390K; RT-p66: K39Q, E40D, K49R, A122V, I135T, P176Q, E177N, P243S, S251I, E335G, R390K, T468S, L517I; gp120: N5K, N57K, A59P, N64E, N71K, T107N, -109F, -111I, -114N, -115S, -116T, -117M, -118R, E124G, R138S, Q142L, I156L, E157G, G158E, E240G, A261K, K262D, A288T, R307K, E309D, -326N, K329T, T330K, N369G, -375Q, M398I, N434-, N435-, N437-, S471T, R474K; gp41: V2A, G3L, L4-, L24I, N42S, R46M, E49Q, L54M, S102T, N105K, S107N, I130E, I135L, N163D, K166N, R214E, W286G, G293V, K297R, I298N, I301V, T306A, E313G, I318V, I321T, I325V, A343V; nef: D38G, -49S, T51-, Y81F, A156N, S188A, M198L; p1: S8P; p17: K15Q, L46I, Q59R, C62V, R91K, K95R, N110S; p24: V11I, V27I, I91V, S102G, R154K, T178S, T200I, R203K, A204G, P207S, T210S, G225S; p6: P23S; p7: K10R, S12N; pro: R14K, E17G, I20L, K34T, I72T; rev: T14R, E32G, H53N, S54T, T62A, L73F, L78I, G99R, P100S, S103P, V104G, S107P, I109V, N116K; tat: Q13H, I39T, T40K, R60S, N64D, G79R; vif: K20T, T67A, R93K, H127D, Q187H; vpr: N15H, H45L, T49N; vpu: A7V, I18L, E29Q, K32R, Q36E, L42I, E62D"}}}]},{"name":"CRF13_cpx_NODE_0000005","node_attrs":{"div":0.10629999999999999,"clade_membership":{"value":"CRF13_cpx"}},"branch_attrs":{"mutations":{"nuc":["A980G","C1002T","C2596T","C4645A","A4774G","A5462G","T5600A","-5603T","T5787C","-6218G","G6345A","A6682G","G6809A","A6821G","-6831A","G6935A","A7152G","T7156A","T7165C","G7166-","A7167-","G7168-","A7169-","C7170-","C7171-","G8017C","G8105A","C8202T","A8922G","C8934A","T8988-"],"gp120":["-122E","R164K","-433S"],"gp41":["A268T"],"nef":["I194V"],"p2":["S8T"],"p24":["L83M","I91F","I96L"],"rev":["E57Q","S86N"],"tat":["K29R"],"vif":["K63R"]},"labels":{"aa":"gp120: -122E, R164K, -433S; gp41: A268T; nef: I194V; p2: S8T; p24: L83M, I91F, I96L; rev: E57Q, S86N; tat: K29R; vif: K63R"}},"children":[{"name":"KP718926","node_attrs":{"div":0.14093,"accession":"KP718926","clade_membership":{"value":"CRF13_cpx"},"country":{"value":"CM"},"date":{"value":2008.0},"Strain_name":{"value":"833_62"},"LANL_subtype":{"value":"CRF13_cpx"}},"branch_attrs":{"mutations":{"nuc":["C213T","G278A","G280-","G286A","A304T","A378C","A417C","A563G","A576T","C577T","A585G","C586T","A592C","A604G","G641T","A677C","C713T","A716G","T788A","T917C","A1017T","T1037C","G1090A","T1100A","C1103T","C1187T","A1196G","C1295T","T1322C","A1367G","T1446A","A1457T","G1458-","C1459-","C1460-","T1484C","C1491T","G1526A","G1562A","A1588G","A1607G","A1616T","G1619A","G1673A","G1690A","-1746C","-1747C","-1748T","T1752G","C1754-","C1755-","C1756-","A1762C","A1828C","G1840A","T1895C","A1990G","T2087C","A2212T","A2215T","G2221A","A2248G","G2275A","A2311G","T2440C","C2453T","T2608C","A2612G","A2626C","G2662A","A2713G","C2720T","T2749C","C2806T","C2822T","T2863C","G2926A","C2927A","A2929T","C3006A","G3085A","A3088G","T3112C","C3133T","C3140T","A3151G","G3173A","A3192G","A3200T","G3236A","G3334A","T3505G","G3617T","A3655G","C3691T","A3793C","A3794C","G3836A","A3876G","T3967C","C3995A","G4268A","A4397T","A4549G","G4622A","T4676C","G4677A","T4678A","T4679G","G4696A","A4737G","T4769G","C4914T","T5006A","C5051T","G5069A","T5072C","A5085G","C5162T","C5237T","T5275G","A5282T","A5293G","C5306T","A5312G","A5345G","A5397C","G5448A","T5492C","G5535A","C5556A","G5561A","A5587G","A5611C","T5616C","C5621A","A5628T","G5635A","T5641C","A5643T","C5663T","A5664G","G5665A","G5736A","T5739G","G5741A","G5781T","G5791-","A5792-","G5793-","G5794-","A5795-","A5796-","T5797-","T5798-","G5799-","C5801A","A5802G","A5803G","A5805G","C5806T","T5808G","-5809G","-5810C","-5811A","A5848G","G5858A","T5861G","C5866A","G5917A","A5918G","C5920T","C5924T","T5956A","T6025A","T6030A","G6055A","A6059G","A6066C","C6110G","T6133G","C6148T","T6163-","A6164-","A6165-","T6166-","A6167-","A6168-","C6169-","T6171-","C6172-","A6173-","C6174-","C6175-","A6176-","A6177-","C6178T","A6179G","C6181G","-6183A","C6186T","-6189C","A6192C","-6195A","-6196C","-6198G","-6200A","-6201C","-6203A","-6204C","-6205T","-6206A","-6207A","-6208C","-6209A","-6210T","-6211C","T6213C","-6214T","A6259G","G6267A","G6273A","G6276A","A6303G","G6325T","G6326A","A6328T","A6336G","T6337A","A6338G","G6339A","T6340A","T6409C","A6450G","T6460G","G6466C","G6569A","A6574T","A6576G","A6577G","G6583A","G6593A","A6606G","C6619T","C6636A","T6643C","A6647G","C6660T","C6692A","G6716A","T6763C","A6776G","C6790T","A6810C","C6812A","-6830G","-6832T","C6840A","A6841T","G6854A","C6855A","T6856A","A6877G","A6881G","G6905A","T6916C","T6932A","C6936A","C6937A","A6958C","T6961C","G6962T","-6967G","-6977C","-6978A","G6996A","T7003-","A7007C","A7013G","C7014T","G7048A","G7072A","G7101A","G7102T","G7106A","A7107G","G7145A","T7153G","A7154G","A7155C","A7216G","A7269G","C7313A","G7322C","A7428G","A7519T","A7522G","C7582T","T7618C","C7655T","A7685T","G7702A","A7773G","A7782G","T7796A","A7799C","A7801G","A7822C","A7837G","T7877G","T7879C","A7887G","A7903T","C7936A","A7962G","G7977A","G7992A","G7995A","A8023G","C8047T","C8146G","T8155C","T8164C","T8172C","T8182A","G8201A","T8214A","A8222C","G8228A","G8263A","T8290C","A8326G","G8329A","G8349A","G8354A","T8366C","C8386A","T8387G","A8400T","A8409G","A8447G","A8502C","G8503A","G8506A","A8536G","C8543T","A8652C","C8661A","G8666T","A8701T","A8718G","A8719G","A8739G","C8747T","T8775C","C8792T","A8851T","G8861A","T8864A","T8887A","C8906T","A8915G","C8921T","T8939C","G8942A","A8947T","-8971G","-8974T","-8975C","-8976T","-8978A","-8979C","-8980C","G8983A","T8986A","C8992T","C9028T"],"INT":["E6D","K7Q","A21T","K34R","L74M","V165I","I208L","G283S"],"RT-p51":["K39N","E40D","T173A","E177D","P243S","Q278N","A304E","A360T","K366R","T369S","V381I"],"RT-p66":["K39N","E40D","T173A","E177D","P243S","Q278N","A304E","A360T","K366R","T369S","V381I","A508S"],"gp120":["A2T","S3A","D4E","T22A","D34E","N57K","A59D","M67I","K69E","N71T","Q86E","S93R","N104E","N108-","T110-","N112T","-114S","-115T","-116T","-117N","-118I","-119T","-120M","-121S","-123R","R138K","R140K","R141K","K150R","K199R","D202E","E204D","E239K","E240D","E241G","E247K","F249I","N251S","A261D","R265G","T269I","A288T","K308E","K319T","T323A","L325F","-326D","K329N","A334K","I343V","G351R","S360T","A361K","E368D","D370Y","-372Q","S373-","G381E","T385P","T387V","M398I","M406I","R416N","D418S","G430N","G431D","N432E","N435R","-436A","K472R"],"gp41":["L4I","V7L","N42S","T128S","N157S","N160S","S165T","K166Q","S192A","K195R","H211Q","E220G","G225E","R231K","L290S","A300I","L304Y","I307L","V309I"],"nef":["G3S","A15E","I20L","T23A","S54H","C55Y","E65G","K104Q","Q107K","E108D","Y120F","N126G","Q170L","M173I","D174E","M182K","Y202F"],"p17":["K15Q","K28Q","C62G","T81L","T84V","Y86S","Q90R","E102D","K114N"],"p2":["A12-"],"p24":["S120N"],"p6":["R4K","P23-","S24P","-26A","Q28P","*50S"],"p7":["P9S","K41R"],"pro":["I64M"],"rev":["G7D","T14K","V16I","P30T","I59V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E6D, K7Q, A21T, K34R, L74M, V165I, I208L, G283S; RT-p51: K39N, E40D, T173A, E177D, P243S, Q278N, A304E, A360T, K366R, T369S, V381I; RT-p66: K39N, E40D, T173A, E177D, P243S, Q278N, A304E, A360T, K366R, T369S, V381I, A508S; gp120: A2T, S3A, D4E, T22A, D34E, N57K, A59D, M67I, K69E, N71T, Q86E, S93R, N104E, N108-, T110-, N112T, -114S, -115T, -116T, -117N, -118I, -119T, -120M, -121S, -123R, R138K, R140K, R141K, K150R, K199R, D202E, E204D, E239K, E240D, E241G, E247K, F249I, N251S, A261D, R265G, T269I, A288T, K308E, K319T, T323A, L325F, -326D, K329N, A334K, I343V, G351R, S360T, A361K, E368D, D370Y, -372Q, S373-, G381E, T385P, T387V, M398I, M406I, R416N, D418S, G430N, G431D, N432E, N435R, -436A, K472R; gp41: L4I, V7L, N42S, T128S, N157S, N160S, S165T, K166Q, S192A, K195R, H211Q, E220G, G225E, R231K, L290S, A300I, L304Y, I307L, V309I; nef: G3S, A15E, I20L, T23A, S54H, C55Y, E65G, K104Q, Q107K, E108D, Y120F, N126G, Q170L, M173I, D174E, M182K, Y202F; p17: K15Q, K28Q, C62G, T81L, T84V, Y86S, Q90R, E102D, K114N; p2: A12-; p24: S120N; p6: R4K, P23-, S24P, -26A, Q28P, *50S; p7: P9S, K41R; pro: I64M; rev: G7D, T14K, V16I, P30T, I59V, T62A, P67S, P100A, S103P, S106P, S112T; tat: K7N, I39T, R60Q, S62N, K71E, T76N, K85E; vif: V31K, G37E, I51V, D61E, H110Y, N140K, K167E; vpr: H45Y, I60L, I63M, I70V; vpu: N2H, V10I, A19V, V20I, D44E, R45K, E58D, N81D"}}},{"name":"AF460974","node_attrs":{"div":0.12930999999999998,"accession":"AF460974","clade_membership":{"value":"CRF13_cpx"},"country":{"value":"CM"},"date":{"value":1996.0},"Strain_name":{"value":"96CM_4164"},"LANL_subtype":{"value":"CRF13_cpx"}},"branch_attrs":{"mutations":{"nuc":["G202A","G481C","G519T","A521C","G647A","A658G","G755A","T788C","G977A","C988A","A1017C","A1077G","A1097C","A1101G","C1136T","A1157G","G1184A","G1247A","A1433C","C1456T","G1458A","C1460A","C1478T","A1497G","T1502G","C1536G","A1616G","T1653C","G1727C","T1782C","C1853T","A1966C","A1982T","G1984A","G2156A","T2158C","T2315C","C2460T","T2476C","C2536T","A2715G","G2716T","C2822G","A2825G","C2848T","C2885T","A2989G","A3043G","G3093A","A3099G","C3174T","G3221A","G3264A","G3293A","T3294C","C3307A","C3346T","A3370G","G3427A","G3439A","A3568C","T3628C","A3727G","A3805T","G3816A","G3834A","G3925A","A4051G","A4130G","C4140T","C4428T","T4606G","A4688G","T4727G","C4761T","T4805C","G4856A","T4912C","A4952T","A5015G","A5058C","T5081C","G5199A","T5203C","G5225A","A5277T","T5311C","A5360G","A5415C","T5457C","A5555G","G5565A","A5567G","C5590T","C5620T","C5639G","A5659G","T5660C","A5700G","G5712T","G5748A","A5865G","A5907G","G5954A","A5955C","T6025C","T6026A","A6061C","G6067T","A6086G","C6087A","T6151G","-6170G","-6183T","A6188-","C6190-","A6191-","A6192-","C6193-","A6194-","A6197-","C6199-","C6202-","-6214A","A6215T","T6216C","G6222A","A6226T","T6385C","A6406T","G6464A","A6578G","A6582T","A6599T","A6605G","C6612T","C6637T","G6644A","T6733A","C6758T","G6774A","T6793G","C6800G","C6822A","T6824C","T6827C","-6830A","-6832C","T6838G","A6848G","G6875A","A6957C","G6980A","G6981A","T6983G","-6998T","-6999C","-7000A","-7001A","-7002A","T7047A","G7054A","G7067T","G7094A","T7095C","T7144G","T7153C","A7154C","A7155T","G7289A","T7309G","A7318G","G7423A","A7533G","T7622A","A7676G","G7677A","A7679C","T7681G","G7688A","T7692C","T7783C","A7801C","G7873A","C7874A","A7880G","G7888T","A7903G","A7935G","C7937A","A7964G","G7965A","C8033A","G8055A","C8065T","C8131G","T8167C","G8317A","G8388A","C8437T","G8479A","G8501A","A8537T","T8646C","G8666A","G8732A","C8853T","G8875A","A8918G","C8948T","G8970A","-8971C","T8972A","A8977-","A8981-","G8982-","G8983-","A8984-","C8985-","T8986-","T8987-"],"INT":["E10D","R14K","R20K","M50I","S119G","T122I","T218I"],"RT-p51":["V21I","A122V","K207S","P243A","I244V","G333E","E335G","A360V","A376T","R390K","V400T","D404E"],"RT-p66":["V21I","A122V","K207S","P243A","I244V","G333E","E335G","A360V","A376T","R390K","V400T","D404E"],"gp120":["D4G","K18R","D34T","L58M","A59V","K69N","T78E","N105-","I106-","T107-","-109V","-111N","N113I","-114T","-115I","-116S","-123K","E124D","E204K","I242V","K243M","N251D","A253V","V264I","A291T","T292G","D294I","H302Y","R307K","Q316E","K320Q","T323E","Y324H","I332V","V341I","A361T","E368A","-372K","S373A","G376-","S377-","-382S","-383N","M398K","A405S","V414T","N434L","-436E","N437T","E438-","T439-","A479T"],"gp41":["K77R","S107T","S125D","N126Q","D129N","I130T","K166N","L191I","I193V","K195N","H211R","P212T","R221E","D230G","L244I","S251N","A300V","L304F"],"nef":["V16I","A32V","S46N","E65D","Y102H","V133I","H171Y","R178K"],"p1":["S8P"],"p17":["G49A","Q108R"],"p2":["A7V","G9-","A10-"],"p24":["P86Q","T116A","I124V"],"p7":["R11G","S12R","L24V"],"pro":["M62L"],"rev":["T14A","R17K","I18V","P30H","K39R","T62D","L73F","Q95E","S107P"],"tat":["Q13H","N64S","Q72*","T76A","E86K"],"vif":["V7G","N47K","M109T","K122N","K158Q"],"vpr":["R32K","G41S","E58V"],"vpu":["Q5S","A11G","I18A","K35N"]},"labels":{"aa":"INT: E10D, R14K, R20K, M50I, S119G, T122I, T218I; RT-p51: V21I, A122V, K207S, P243A, I244V, G333E, E335G, A360V, A376T, R390K, V400T, D404E; RT-p66: V21I, A122V, K207S, P243A, I244V, G333E, E335G, A360V, A376T, R390K, V400T, D404E; gp120: D4G, K18R, D34T, L58M, A59V, K69N, T78E, N105-, I106-, T107-, -109V, -111N, N113I, -114T, -115I, -116S, -123K, E124D, E204K, I242V, K243M, N251D, A253V, V264I, A291T, T292G, D294I, H302Y, R307K, Q316E, K320Q, T323E, Y324H, I332V, V341I, A361T, E368A, -372K, S373A, G376-, S377-, -382S, -383N, M398K, A405S, V414T, N434L, -436E, N437T, E438-, T439-, A479T; gp41: K77R, S107T, S125D, N126Q, D129N, I130T, K166N, L191I, I193V, K195N, H211R, P212T, R221E, D230G, L244I, S251N, A300V, L304F; nef: V16I, A32V, S46N, E65D, Y102H, V133I, H171Y, R178K; p1: S8P; p17: G49A, Q108R; p2: A7V, G9-, A10-; p24: P86Q, T116A, I124V; p7: R11G, S12R, L24V; pro: M62L; rev: T14A, R17K, I18V, P30H, K39R, T62D, L73F, Q95E, S107P; tat: Q13H, N64S, Q72*, T76A, E86K; vif: V7G, N47K, M109T, K122N, K158Q; vpr: R32K, G41S, E58V; vpu: Q5S, A11G, I18A, K35N"}}}]}]},{"name":"CRF13_cpx_NODE_0000006","node_attrs":{"div":0.10004,"clade_membership":{"value":"CRF13_cpx"}},"branch_attrs":{"mutations":{"nuc":["G519A","G2459A","A3211G","G5199A","G5712T","-6170A","-6189T","-6218G","A6599T","T6793C","-6831G","-6832A","-6967T","-6970C","-6971A","-6972G","-6973C","-6974A","-6975C","G7440T","G7992A","C8220G","C8992T"],"RT-p51":["E122K"],"RT-p66":["E122K"],"gp120":["K329T","-374T","-433N"],"gp41":["R46M","I130T","L290V","T306S"],"nef":["T51-"],"vpr":["R32K"]},"labels":{"aa":"RT-p51: E122K; RT-p66: E122K; gp120: K329T, -374T, -433N; gp41: R46M, I130T, L290V, T306S; nef: T51-; vpr: 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I101L; RT-p51: E40D, K49R, P170T, A200T, D335G; RT-p66: E40D, K49R, P170T, A200T, D335G; gp120: K37A, G57E, K93Q, N105T, -107N, -109S, R201K, D251N, E265T, -372A, P412Q, L425I, G431A, S453N, K462R; gp41: Y108F, S133N, E137Q, L209H, S277L; nef: V16I, Q22R, F120Y; p1: N9S; p17: T84V; p24: T110N; p6: A22T, -23P, E32D, L38M; p7: K3R; tat: Q60P, L74I; vif: R37K, K63E, Q105R, N140K; vpu: I20V, Y30I, A48T, K63T, -69D"}},"children":[{"name":"AY371169","node_attrs":{"div":0.13337000000000002,"accession":"AY371169","clade_membership":{"value":"CRF25_cpx"},"country":{"value":"CM"},"date":{"value":2002.0},"Strain_name":{"value":"1918LE"},"LANL_subtype":{"value":"CRF25_cpx"}},"branch_attrs":{"mutations":{"nuc":["G354A","A370G","A398G","A404G","A411C","A412G","A418G","G480A","T485C","C496G","A516C","A520G","G524A","C539T","A605G","G667A","C679A","G690A","G755A","A758G","A759C","T760C","G761A","G762A","C779A","T884C","G908A","A932G","A978C","A1025G","G1031A","T1040C","A1046G","G1090A","G1109A","C1292T","A1343G","T1385C","T1422C","T1427A","T1505C","G1508A","G1553A","T1559A","G1592T","A1642G","T1646C","T1682C","T1722C","A1733G","C1768A","G1846A","C1888T","C1903T","C1979G","C1985G","T1987C","A1988T","G2056A","G2065A","T2080C","T2269C","A2290G","C2296T","G2392T","T2393C","G2406A","A2414T","A2455G","A2545G","G2583C","A2601G","A2611G","C2615A","G2707A","C2720T","C2740T","G2821A","G2830A","A2839G","C2909G","A2918C","A2925G","C2985T","G3029A","C3067A","A3080G","C3095G","A3097C","G3124A","A3164G","G3169A","A3200G","A3204C","A3217G","A3230G","C3266T","A3268G","C3322A","C3391A","A3456G","C3787T","T3793C","C3908T","A3979G","T3991C","T4039A","A4112G","T4140C","T4147C","G4228A","G4262A","G4263C","T4441C","C4471T","A4495G","A4567G","A4725C","G4766A","G4856A","A4862G","G4981A","A4988T","A5038G","A5057G","A5090G","A5112G","G5128A","T5194C","T5197C","G5212A","A5233G","C5237T","A5278G","C5333T","C5356T","C5412T","C5415T","G5427A","A5431G","A5432G","G5437C","T5462G","C5478T","C5491A","C5496G","A5535T","G5556A","G5557A","T5562C","T5602A","C5614T","C5627T","C5660T","T5687A","A5689C","A5727T","G5775A","C5833G","C5869A","G5893A","G5915A","C5923T","A5926G","G5955A","T5956A","G5972A","T5980C","C6026A","A6065G","C6165G","G6170A","-6175C","A6177T","T6178C","G6180A","T6184A","T6187C","A6195G","T6196C","A6200-","A6212G","G6215A","T6216A","-6217T","-6220C","A6222G","-6225A","C6241T","A6251G","A6320C","A6338T","G6339C","T6340A","C6347T","A6350C","A6354G","G6368A","C6412T","G6466T","A6476G","A6489C","A6525G","G6526A","A6532G","C6613T","A6623C","G6640A","C6648T","A6649G","G6693A","G6706A","A6716G","T6733A","G6767A","C6776T","A6801G","C6807T","A6809G","-6830A","-6832G","-6835C","A6840T","A6848T","C6850A","T6856C","A6858G","A6881G","G6894T","T6916C","G6935A","A6974-","A6985T","-6989G","-6991G","-6994A","-6995G","-6996A","-6997T","-6998G","-6999G","-7000C","-7008A","C7020A","A7032G","A7101G","G7102A","A7106T","T7146C","A7152C","T7153A","A7154G","A7155C","G7160A","A7162C","C7170T","C7171A","C7264T","A7279G","A7282G","G7307A","T7309C","T7323C","A7339G","G7343A","T7403C","A7427G","T7432C","T7627C","G7628A","A7666G","A7690G","A7713T","A7726G","T7774C","A7782G","G7790A","A7791G","G7868A","C7874A","A7931C","A8011C","G8019A","A8029G","C8044A","A8152G","G8159T","T8167C","T8171C","T8172A","T8182A","G8234A","T8235C","A8240G","G8264A","T8268C","T8291C","G8292T","A8297G","A8303G","G8304T","G8365A","T8366C","C8369A","A8370G","A8372-","G8373-","T8374-","A8409G","C8411A","A8412G","T8440C","T8450C","G8458A","C8471T","A8489G","T8492C","C8503A","C8510T","G8570A","G8588A","T8636A","A8643G","A8647G","C8648G","A8652C","A8657G","C8666A","G8682A","A8726G"],"INT":["I113V","I122T","G163T"],"RT-p51":["R104K","T107S","S163T","E169G","P272A","K275Q","K277R","A297V","D324E","I329V","Q334D","R357G","T369A","E370A","S379G","T386I","D432E"],"RT-p66":["R104K","T107S","S163T","E169G","P272A","K275Q","K277R","A297V","D324E","I329V","Q334D","R357G","T369A","E370A","S379G","T386I","D432E","K454R"],"gp120":["N5K","E21K","S34K","V40I","E57D","L58I","N71D","V106N","N111V","N114R","S115E","I133V","N158D","-159D","N161S","I166L","N167S","A172T","T208A","K212T","K224R","T255N","I257L","T265M","T288A","V305I","T308S","E316G","A318V","K319A","N328T","K329I","I332S","I343V","S347I","G361S","-370S","-379G","-380T","-381D","-382G","T385N","P389Q","K393R","T418S","-433T","N434A","-436N","N437T","T439I"],"gp41":["V2I","V7A","A14T","S42G","D109N","Q137L","N160S","D163S","A189T","L191I","T210P","E220G","S239N","D247E","G286W","L290Q","V311T","N313D","V321I","V322A","Y330L","I332V","R334V"],"nef":["S8N","S9R","I10V","V11-","A28E","V33A","R39K","D98E","I101V","H102W","K104Q","V114I"],"p1":["K4R"],"p17":["V7I","K12R","K26R","K28R","G49S","A54G","M61L","E62G","S111N","T115K","A119T"],"p24":["M10P","V11I","I83L","S120N"],"p6":["F15L","P30Q"],"p7":["E42D"],"pro":["Q61E","L63V","I64L","M89I"],"rev":["D7V","R14Q","V16A","Y28S","I55L","T61A","I102V","G104V","S107P","V108A","S112T"],"tat":["K19G","A21P","K29R","L39I","N40K","R53S","G61S"],"vif":["N47H","R132K","E134D","K151R","K176E","R181K"],"vpr":["Q3R","H45Y","T84I"],"vpu":["P3S","S7F","A18V","F27Y","I28L","E40D","-72A"]},"labels":{"aa":"INT: I113V, I122T, G163T; RT-p51: R104K, T107S, S163T, E169G, P272A, K275Q, K277R, A297V, D324E, I329V, Q334D, R357G, T369A, E370A, S379G, T386I, D432E; RT-p66: R104K, T107S, S163T, E169G, P272A, K275Q, K277R, A297V, D324E, I329V, Q334D, R357G, T369A, E370A, S379G, T386I, D432E, K454R; gp120: N5K, E21K, S34K, V40I, E57D, L58I, N71D, V106N, N111V, N114R, S115E, I133V, N158D, -159D, N161S, I166L, N167S, A172T, T208A, K212T, K224R, T255N, I257L, T265M, T288A, V305I, T308S, E316G, A318V, K319A, N328T, K329I, I332S, I343V, S347I, G361S, -370S, -379G, -380T, -381D, -382G, T385N, P389Q, K393R, T418S, -433T, N434A, -436N, N437T, T439I; gp41: V2I, V7A, A14T, S42G, D109N, Q137L, N160S, D163S, A189T, L191I, T210P, E220G, S239N, D247E, G286W, L290Q, V311T, N313D, V321I, V322A, Y330L, I332V, R334V; nef: S8N, S9R, I10V, V11-, A28E, V33A, R39K, D98E, I101V, H102W, K104Q, V114I; p1: K4R; p17: V7I, K12R, K26R, K28R, G49S, A54G, M61L, E62G, S111N, T115K, A119T; p24: M10P, V11I, I83L, S120N; p6: F15L, P30Q; p7: E42D; pro: Q61E, L63V, I64L, M89I; rev: D7V, R14Q, V16A, Y28S, I55L, T61A, I102V, G104V, S107P, V108A, S112T; tat: K19G, A21P, K29R, L39I, N40K, R53S, G61S; vif: N47H, R132K, E134D, K151R, K176E, R181K; vpr: Q3R, H45Y, T84I; vpu: P3S, S7F, A18V, F27Y, I28L, E40D, 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vpr: P37L, I70T, Q86R, S96P; vpu: P3S, I21V, K63T, 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Q2T"}},"children":[{"name":"EU697909","node_attrs":{"div":0.14382999999999999,"accession":"EU697909","clade_membership":{"value":"CRF43_02G"},"country":{"value":"SA"},"date":{"value":2003.0},"Strain_name":{"value":"J11456"},"LANL_subtype":{"value":"CRF43_02G"}},"branch_attrs":{"mutations":{"nuc":["C44T","G46A","T71C","A311C","C362T","G378A","G424A","G438A","A440T","A509G","A515G","G541A","A543G","C558A","C583T","A619G","C623T","G687A","C707T","A708G","T771C","C827T","A932G","C988A","A1025G","C1060A","C1330A","A1352G","G1498A","A1501T","T1535C","T1559C","A1588G","A1776G","G1779A","C1826T","G1828A","T1987C","A2127G","C2263T","C2499A","G2704A","T2776C","A2975C","C3178T","G3220T","G3221T","A3230G","C3449A","G3477A","A3489G","T3497A","C3498A","A3619T","A3737G","A3835G","G3859A","C3994T","T4039A","C4132T","C4149T","G4244C","C4288T","A4303T","C4471A","T4670C","A4684G","A4694T","A4760T","A4775G","T4827C","G4855A","A4865C","C4898T","A4936G","T4957C","A4958G","A4968T","A5048G","C5056T","C5148T","A5282C","C5306A","G5385A","A5433T","T5584C","C5612T","A5621C","A5644G","T5686C","G5700A","G5720A","C5734A","G5858A","A5867C","C5869A","T5911C","T5941C","A5965G","T5992C","A6023T","T6025C","G6029A","T6085G","C6160A","-6170A","-6177C","-6179T","-6180G","A6182C","A6191G","T6193C","-6196T","-6202G","-6205G","-6206A","-6208A","T6210C","T6212C","-6213T","-6214A","-6215C","A6216G","-6217T","-6219T","A6234C","T6242A","A6281G","G6292T","T6310C","A6329G","G6333A","A6336G","T6337G","A6456G","G6457A","T6460A","A6461G","A6462G","G6463A","A6471G","C6482G","A6535G","C6551T","A6573G","C6598T","G6605A","T6618A","A6648C","G6743A","C6758T","G6767A","T6787G","A6791G","A6800-","A6801-","T6802-","G6803-","T6804-","A6805-","A6806-","A6811-","A6814T","C6815G","A6820G","A6821G","A6822C","G6824C","C6826A","T6827C","T6829A","-6830G","-6831G","-6832A","T6841C","T6844A","C6856A","T6857C","T6860C","C6861A","A6863G","A6889T","A6926G","G6936A","C6951-","-6958C","T6961C","-6963G","-6964A","-6967T","C6984T","-6990C","-6991A","-6992T","-6994A","-6995G","-6996G","-6997A","-6998T","-6999C","-7000T","-7001A","-7002A","-7003T","-7004G","-7005A","-7006T","-7007A","-7008C","-7009T","T7099C","-7162T","-7164C","A7169G","C7170T","T7213C","G7322T","G7343A","C7684T","C7691G","C7702G","G7729A","A7741G","G7759A","A7782G","T7796A","G7818A","A7935G","C7940T","A7941G","C8047T","A8069T","A8099G","T8101G","G8102A","C8103T","A8152G","G8173A","G8213A","T8321C","A8386C","A8396G","A8435G","T8507C","G8528A","T8531C","G8554A","C8676T","T8687C","A8739G","G8799A","A8834G","G8917A","A8918C","T8923G","C8957T","A8970T","G8991A","A8998G"],"INT":["A125V","E157Q","D232E"],"RT-p51":["K11R","T135K","T294P","A376S","S379G"],"RT-p66":["K11R","T135K","T294P","A376S","S379G","L452I","R461K","K465R","S468N","I548V"],"gp120":["A2T","N5Q","T57S","E59K","H77Q","N102K","-106I","-107T","N108C","-109P","-111G","T112D","C113S","-114T","K127T","S130T","T143A","N158G","-159A","D162S","K201R","D202E","K203G","N206S","Q210E","E240G","D251N","I255N","E265A","A291T","T292G","D294I","D297N","H302Y","V305I","E312N","M313T","L314-","K315-","N316-","V317-","Q320-","L321-","K323-","F325-","N328I","T330N","N334K","S335P","S336H","T337A","N358D","G361E","-379N","-380T","-381S","-382G","-383S","-384D","-385T","T439V"],"gp41":["V7F","A14T","Q130E","S133R","N160S","S165T","R172K","H211R","Q213W","S256C","I266V","A267I","V304I"],"nef":["E15A","R71K","I133V","V153I","R192N","I194R"],"p17":["A15T","R30K","V35I","R69K","T70A","L75I","A83V","K95R","A118T","S125G"],"p24":["S14P","T110N","T200N","S207T"],"p6":["K33E","E34K","W50*"],"p7":["R11K","N12I","K41R"],"rev":["P31L","H67F","Q74L","D84G","C85D","I102V","V109I"],"tat":["K29M","S70P","I76A","R78G"],"vif":["K33R","K36N","R90K","R93S","E117G","I124T","I128L","T157I","P188S"],"vpr":["Y15F","I60L","L68M","G94S"],"vpu":["T2I","E5A","I13V","V21I","F27L","L43I"]},"labels":{"aa":"INT: 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R269K, D278G; RT-p66: S123D; gp120: T35S, S37K, T57V, A253T, R280S, -318T, S366N, -368S, -370S, -371T, -372N, -374T; gp41: I264V, C326G, F340L; nef: I194L; p17: A15S, R30K, M31L, L34I, K76R, S126N; p24: V11I; p6: A39T; rev: H82S, I102V, S107P; tat: K19T, A21P, K53R; vif: M8V, D117E, Q127E, R130S; vpr: H45Y"}},"children":[{"name":"AY371121","node_attrs":{"div":0.14734999999999998,"accession":"AY371121","clade_membership":{"value":"G"},"country":{"value":"CM"},"date":{"value":2001.0},"Strain_name":{"value":"01CM_4049HAN"},"LANL_subtype":{"value":"G"}},"branch_attrs":{"mutations":{"nuc":["G398A","A423C","C456A","G481A","T503A","A513G","T514C","A519G","T525A","G527A","C558A","T570C","G579C","A585G","C586T","G607A","A664G","C665A","T668C","A694G","G695A","A705G","G717A","T718G","T731C","C773A","T777A","T782C","A839C","A878C","C879T","A880C","A881C","A938T","G968A","A978T","A988C","A1115T","G1192A","T1229C","G1256A","G1268A","C1292T","G1339A","A1361G","G1450C","T1451A","G1452A","G1455A","T1501C","T1559C","A1601G","A1619G","A1642G","T1646C","G1661A","G1691C","T1728G","A1771G","A1793G","G1794A","T1796C","G1839A","A1840G","A1867G","A1903C","G1997A","A2026G","T2080A","G2111A","C2149T","G2182A","A2194G","A2212T","G2317A","C2353T","A2395G","A2406G","A2422G","T2425C","A2461G","G2473A","G2518A","A2612G","G2629A","G2714A","A2726G","A2752G","A2881G","G2914A","C2930T","A2938G","C2941T","G3001A","G3015A","G3165A","A3196G","T3253C","A3370G","G3439A","A3497G","A3544T","T3566C","C3649T","A3655G","G3737A","G3770A","T3778C","G3808C","C3823T","G3836A","G3859A","T3976C","C4068G","G4096A","A4108G","T4117C","C4141T","A4162C","G4263C","T4291C","C4471T","T4477C","A4498C","A4531G","A4555G","A4564G","T4672A","T4674C","G4677A","G4689A","A4693G","G4695C","G4696A","C4697T","G4735A","G4737A","A4774T","A4775G","G4779A","A4817G","G4838A","C4844T","T4868C","C4883T","C4914T","C4976T","C4993A","T5018C","G5030A","A5049C","G5087T","A5099G","C5115T","A5167G","G5236A","G5257A","A5305G","A5312G","C5351T","C5432T","C5445T","A5448C","G5461A","T5462A","T5478C","G5482T","T5483A","A5535C","C5539A","A5544G","G5545A","C5551T","A5555C","G5556A","A5564C","G5565A","A5601G","A5602T","-5626G","G5673A","A5694G","A5727C","T5739G","A5781G","-5799T","G5812-","-5824A","A5896C","T5911A","G5915A","A5918C","C5921A","T5932C","T5948G","C6024T","G6086C","C6097T","T6154G","T6155C","-6172C","-6174C","-6177C","T6178C","-6179A","-6180C","T6181C","A6188G","C6189G","C6190T","A6192C","-6195T","-6196A","A6197G","-6198A","-6200A","-6201A","-6202T","-6203A","-6204G","-6205C","-6206A","-6207A","-6208T","-6209A","-6210A","-6211T","-6213T","-6214C","-6215A","-6216C","-6217G","A6219T","-6220G","A6234C","A6235C","C6238T","C6241T","T6244C","G6274A","A6276T","G6277A","A6279G","A6281C","A6283G","T6337A","G6345T","A6368T","G6391A","A6395G","C6403A","A6430G","G6457A","G6466T","C6482T","A6489G","G6575A","G6617A","A6653G","C6660T","A6695T","A6744G","G6774A","A6775G","A6776G","G6788A","A6789C","G6790A","-6808A","A6811C","A6813C","C6815T","T6816C","A6817T","G6819C","A6821T","A6824G","T6825A","C6826A","T6827-","-6832A","A6833T","C6849T","C6856G","A6877G","A6886C","T6895C","G6936A","-6948T","T6955A","A6956T","T6957C","T6958A","-6966G","-6983A","-6984C","-6985A","-6986A","-6987A","-6988T","-6989A","-6990G","-6991T","-6992A","-6993C","-6994T","-6995G","-6996A","-6997G","-7005A","-7006A","G7042A","C7084T","A7090C","G7100A","G7147A","A7152G","T7153G","A7154G","C7156T","A7161C","-7162C","A7163T","-7164C","-7165A","C7170T","T7192A","G7198A","G7212A","G7225T","C7250T","C7313A","G7315A","G7428A","A7519G","A7527T","T7618C","A7626T","G7633A","G7640A","C7678T","G7712A","A7713T","A7722G","C7747A","C7770A","A7771C","T7775C","A7782G","C7801A","T7843G","A7885G","A7891G","G7892A","G7957A","A7962G","G7977A","C7984A","G7995A","G7997A","T8008A","G8032A","G8050A","C8080A","T8091G","C8092T","T8115C","G8130A","T8157G","G8158T","T8159G","T8171C","T8174C","G8184A","T8203C","A8222C","C8242T","A8273G","T8279G","A8294C","G8308A","-8364A","-8367A","-8370A","-8372A","C8385A","G8388A","G8393A","G8415A","G8428A","T8431A","G8434C","T8440C","T8442-","C8443-","T8444-","C8445-","A8446-","A8447-","G8448-","A8449-","T8450-","T8451-","T8452-","A8453-","G8454-","C8455-","T8456-","A8457-","G8458-","G8459-","C8460-","A8461-","T8462-","G8463-","G8464-","A8465-","G8466-","C8467-","A8468-","A8469-","T8470-","C8471-","A8472-","C8473G","A8474G","C8477T","C8480G","A8481-","A8482-","T8483-","A8484-","C8485-","T8505A","C8534T","T8568C","G8570A","A8643G","A8688C","T8711C","A8718T","A8719G"],"INT":["E11D","A21T","A98G","G163A"],"RT-p51":["E6K","K39N","K104R","T173A","M178I","E207K","K211E","R307K","R357K"],"RT-p66":["E6K","K39N","K104R","T173A","M178I","E207K","K211E","R307K","R357K","T468A","Q483H","S491P","V548I","V559I"],"gp120":["D19E","D21N","T22P","P23T","S32A","E78Q","-106V","-107T","-108T","-109T","K123-","E124G","K127T","K141I","K142R","K143Q","N161R","R164M","T172S","N181D","D183E","P210S","K212R","E241K","V255I","S263T","N267D","T269I","S280T","I281F","D297G","T308A","R311K","E312T","T332I","N334K","G361E","N365I","-367I","-373S","-375E","-376N","-377E","-385T","-433T","N434R","T439I","D446E","S453N","K457N"],"gp41":["L4I","S42N","Y75F","Y108F","D113N","E137I","N140S","D148E","A156D","N160S","N166K","V197I","E220G","G225E","R231K","D23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E11D, A21T, A98G, G163A; RT-p51: E6K, K39N, K104R, T173A, M178I, E207K, K211E, R307K, R357K; RT-p66: E6K, K39N, K104R, T173A, M178I, E207K, K211E, R307K, R357K, T468A, Q483H, S491P, V548I, V559I; gp120: D19E, D21N, T22P, P23T, S32A, E78Q, -106V, -107T, -108T, -109T, K123-, E124G, K127T, K141I, K142R, K143Q, N161R, R164M, T172S, N181D, D183E, P210S, K212R, E241K, V255I, S263T, N267D, T269I, S280T, I281F, D297G, T308A, R311K, E312T, T332I, N334K, G361E, N365I, -367I, -373S, -375E, -376N, -377E, -385T, -433T, N434R, T439I, D446E, S453N, K457N; gp41: L4I, S42N, Y75F, Y108F, D113N, E137I, N140S, D148E, A156D, N160S, N166K, V197I, E220G, G225E, R231K, D232N, F263C, V271A, S277L, L285C, W286G, Y291H, R294Q, I307L, R324G, N331H; nef: Q15K, V16I, V25I, G29E, V30E, G31A, V33A, S34-, Q35-, D36-, L37-, A38-, R39-, H40-, G41-, A42-, I43-, T44-, N47-, T48-, C55S, I101V, N116H, N126C; p1: K4R; p17: K30Q, L41M, G49D, I60A, K62G, L64I, L75I, F79L, V82L, T84V, R91K, N110R, K120R, N124D, V128S; p2: G9A, A10T, A11T; p24: S16T, Q50S, I83L, Q86P, E128D, R154K, R203K; p6: R4S, F17V, K31R; p7: I12T; pro: R14K, E35D; rev: S7A, E10G, R14Q, R17Q, A37T, R50K, S54T, A62T, A68T, L78I, S82C, G99R, V104W, V108A, V109A; tat: T19I, K24N, V29K, V36Y, R53S, G57R, P59S, Q60P, K63T, G83D, K85E; vif: M29K, Y30H, V31I, A35T, K36R, G37H, R50K, V51I, K63M, V65I, H110Y, T155P, R167S, P177S; vpr: A4V, I70V; vpu: T24S, E40D, D44E, T61L, E62A, E63A, A65M, T66E, -68G, V69N, E70F, M71D, G72-, D73-, F74-, 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N125S, Q130E, E137V, S138A, N140T, K144Q, A151S, N160D, N166H, T208I, T210P, G220E, S239N, A267V, F304L, I309V, V322G; nef: G3A, S8V, V16I, I20L, P24R, P25Q, V33A, S46R, D64E, R71K, A83G, D98E, I101V, Q107R, F120Y, T133I, F135Y, D149E, V153I, N157T, K158I, Q170L, E201D; p1: N9H; p17: P23Q, M31L, R43K, D49G, T53S, A54T, Q63K, L68V, F79Y, R91K, K95R, S111G; p2: A7V, S8T; p24: Q86P, E98D, T119A, I124V, V148T, G183N; p6: T8S, I21T, *50S; p7: S4G, K41R; pro: D35E, K70R; rev: A15T, Y28P, A37T, G99R; tat: S61N, P73S, L74S, P81Q, G83D, P84Q, E85K; vif: M8V, R67T, K77R, N95H, S130R, T140N, T155P, P156Q, T157K, A159T, P187H; vpr: E25D, N48S, I63M, F72Y, P93S, G94S; vpu: Q2L, E5Q, A7F, V10A, V14L, D69N, N81I"}}},{"name":"FR846408","node_attrs":{"div":0.1588,"accession":"FR846408","clade_membership":{"value":"G"},"country":{"value":"PT"},"Strain_name":{"value":"PT3037"},"LANL_subtype":{"value":"G"}},"branch_attrs":{"mutations":{"nuc":["T200C","C217T","T250C","A263T","A268G","-304A","-305A","C362T","G378T","C456A","A461C","T479C","T485C","G520A","G534T","C540A","C558A","T572C","A584C","A605T","G614T","A643T","A672G","G699A","A704G","A759C","T760C","G761A","T789C","A869G","C950T","G954A","A980G","C988A","T1001C","A1024G","A1112G","A1115C","G1218A","C1292A","T1299C","G1301A","A1391C","G1442C","G1487A","C1535T","A1567G","C1610T","C1712A","-1775C","G1819A","G1839A","C1864T","C1913T","A1982G","G2074A","T2107C","T2116A","A2191G","A2221G","T2380C","G2389A","G2473A","A2498G","A2500C","G2539A","A2599G","A2612G","A2614C","T2653C","T2689C","A2714C","C2728A","C2740T","T2803C","A2838T","A2846G","G2998A","C3006A","C3133T","G3173A","G3229A","T3240A","G3243A","G3244T","A3247G","A3248G","G3378A","G3428A","G3440A","A3483G","A3508T","C3517T","T3541C","A3583C","A3643G","G3679A","G3737A","G3808T","G3816A","C3857T","T3967C","T3970C","T3977G","A4090T","C4258T","G4267A","G4388T","A4513G","G4549A","A4643G","T4691A","A4694G","C4757T","C4776A","G4786A","G4829A","G4859A","C4914T","G4923A","C4925T","A4951G","T4959A","A4988C","A4993C","A4997G","A5059G","C5062T","A5134G","T5203C","C5242T","A5336T","C5351T","G5363A","G5370A","T5439C","C5445T","A5547G","C5556T","T5568C","A5576C","A5613G","A5622C","T5626G","A5652G","C5685T","A5693T","A5694G","A5727C","A5729G","G5747A","C5833G","G5908A","T5911G","T5992C","A6022C","A6029G","G6088A","C6165A","T6166A","A6177G","T6178C","A6180C","C6183A","A6188G","G6189C","C6190A","A6192C","-6195C","A6197C","-6201C","-6205A","C6210T","-6215A","-6216A","-6217G","-6222C","A6225G","G6280A","A6286G","C6289T","G6329A","G6330A","A6336C","T6337A","G6339A","G6392A","A6464G","C6548T","G6583A","A6605G","G6628A","A6639C","A6644G","A6648G","G6669A","A6692C","G6693C","T6695A","C6758T","A6789G","T6792C","A6800G","T6808A","G6809A","C6810A","C6815T","A6818-","A6819-","A6820-","A6824C","T6825A","C6826A","T6829C","-6830T","-6831T","-6832T","A6836G","C6844A","C6857T","A6913G","-6953A","-6954G","-6955T","T6956C","T6958G","A6959G","A6960C","-6966A","T6967C","-6969A","-6971A","-6972G","-6974A","-6975A","-6976T","-6977G","-6978A","-6979A","G7004-","A7005-","C7008A","G7026A","C7077T","G7088A","C7089G","A7090G","A7094G","C7096A","T7107A","T7150A","A7158C","T7159A","G7160A","G7162T","A7163-","T7165-","T7170C","G7256A","G7269A","A7274C","G7295A","T7309G","G7340A","A7342C","G7495A","T7509C","A7532C","A7590C","T7609C","A7633T","C7658G","G7677A","A7690C","A7693G","A7701G","C7703T","A7722T","C7723T","A7782G","C7801T","C7805T","A7832G","T7968C","C7969A","G7977A","G7997A","T8171G","A8191G","G8194A","A8208G","G8222A","T8265C","G8267A","G8276T","T8290G","T8292G","A8297G","A8299G","G8303A","T8304G","T8321G","T8322C","A8323C","A8329G","G8330C","G8354A","G8385A","A8396T","G8407A","G8436C","G8458A","A8469G","G8490A","G8537A","G8590C","T8645A","C8676T","T8745C","C8771T","A8783C","G8787A","G8798A","G8818A","G8861A","G8868C","C8873T","A8875G","A8922C","C8945G","T8973C","A8998G","C9017T","A9034C","C9078T","T9146C","G9175T"],"INT":["R14K","L68V","A205S"],"RT-p51":["I173D","K207Q","S211R","D248V","S251G","A304E","A360T","I382K","W383Y","K385E","R428Q"],"RT-p66":["I173D","K207Q","S211R","D248V","S251G","A304E","A360T","I382K","W383Y","K385E","R428Q","A445T","E449K","K463R","E471D","V548I"],"gp120":["D19E","T23I","-105S","-106L","-107M","N108K","V109D","N113-","S115-","N160G","N161T","S162N","V180M","M243I","N251D","E262T","I264V","N265S","S280P","F281I","H302Y","N312S","M313T","N316D","-324Q","-326F","-327N","N328G","T330K","S337A","G361E","-367S","-368L","-369A","-371N","-372N","-375E","N378-","T385-","R391K","A408V","A412R","N414E","E432K","N433-","I439T","V468I","R472K","E481K"],"gp41":["G13S","V69A","N96T","E110D","D113N","Q119E","Q129H","N133S","N140I","N160S","I177V","I222T","G225E","D232N","K233R","L290V","N302S","V307I","V321A","V322I","V325F","F329L","L330R","I332V","V334R","L340A","A343L"],"nef":["E15K","E18D","R22Q","A32P","R39K","I43V","A50T","F135L","D149N","G159E","M173I","A176P","K178R","I194L"],"p17":["A15S","L41M","E42D","G62E","A67S","Q69K","L75I","Q90H","E93D","E103V","K113E","E122K"],"p2":["Q6H"],"p24":["M10P","E75K","I83M","E98G","E128D","D163N","D187E"],"p6":["E32D","S47N"],"p7":["K34R"],"pro":["R14K","P39S","I62V"],"rev":["E11G","T14I","I18T","I21L","R50K","V108G","K115E","E116K"],"tat":["N67T","S87Q"],"vif":["L64I","R67K","H110Y","D113N","K122R","L125I","E134D","Q136P","K158R","A159V","H183R"],"vpr":["Q77H","V89I"],"vpu":["E5D","A7V","Q29L","E40D","K41R","R47K","-72A","P76-"]},"labels":{"aa":"INT: R14K, L68V, A205S; RT-p51: I173D, K207Q, S211R, D248V, S251G, A304E, A360T, I382K, W383Y, K385E, R428Q; RT-p66: I173D, K207Q, S211R, D248V, S251G, A304E, A360T, I382K, W383Y, K385E, R428Q, A445T, E449K, K463R, E471D, V548I; gp120: D19E, T23I, -105S, -106L, -107M, N108K, V109D, N113-, S115-, N160G, N161T, S162N, V180M, M243I, N251D, E262T, I264V, N265S, S280P, F281I, H302Y, N312S, M313T, N316D, -324Q, -326F, -327N, N328G, T330K, S337A, G361E, -367S, -368L, -369A, -371N, -372N, -375E, N378-, T385-, R391K, A408V, A412R, N414E, E432K, N433-, I439T, V468I, R472K, E481K; gp41: G13S, V69A, N96T, E110D, D113N, Q119E, Q129H, N133S, N140I, N160S, I177V, I222T, G225E, D232N, K233R, L290V, N302S, V307I, V321A, V322I, V325F, F329L, L330R, I332V, V334R, L340A, A343L; nef: E15K, E18D, R22Q, A32P, R39K, I43V, A50T, F135L, D149N, G159E, M173I, A176P, K178R, I194L; p17: A15S, L41M, E42D, G62E, A67S, Q69K, L75I, Q90H, E93D, E103V, K113E, E122K; p2: Q6H; p24: M10P, E75K, I83M, E98G, E128D, D163N, D187E; p6: E32D, S47N; p7: K34R; pro: R14K, P39S, I62V; rev: E11G, T14I, I18T, I21L, R50K, V108G, K115E, E116K; tat: N67T, S87Q; vif: L64I, R67K, H110Y, D113N, K122R, L125I, E134D, Q136P, K158R, A159V, H183R; vpr: Q77H, V89I; vpu: E5D, A7V, Q29L, E40D, K41R, R47K, -72A, P76-"}}}]},{"name":"G_NODE_0000019","node_attrs":{"div":0.12697999999999998,"clade_membership":{"value":"G"}},"branch_attrs":{"mutations":{"nuc":["C160T","-304A","-305A","C587A","T1787C","A1867G","T2499C","A2613T","A3103G","A3524G","G3808C","C3826T","A3866G","A3961G","T4261C","A4717T","A4966G","A5159G","C5556G","C5678T","G5725C","T5787C","C5792A","C5795A","C5797-","T5798-","G5800T","A5804C","T5807C","G5808C","G5809C","G5810T","G5811T","-5813T","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","-5824G","A6159C","C6183G","C6198G","C6482T","T6618A","G6799A","-6955G","-7006C","A7155C","T7156A","-7164C","G7628A","C7651A","C7898A","C8123T","A8269G","A8323G","A8342C","A8876G","A8879G","G8943A"],"INT":["I31V"],"RT-p51":["V135T","Q334P"],"RT-p66":["V135T","Q334P","R461K","T477A"],"gp120":["N102T","-112N","-116S","I255N","-322K","-324I","S335P","G361K","-377S","-384D"],"gp41":["D109N","N125S","Q199K","G226D","F329I"],"nef":["S8C","A83S","E201N"],"rev":["P92L"],"vif":["Y44F","E127G"],"vpr":["T19A"],"vpu":["T24I","E40Q","E60D","L61T","A62E","A63E","V65A","E66T","M67L","G68-","D69V","F70E","D71M","-72G","-73D","-74F","-75D"]},"labels":{"aa":"INT: I31V; RT-p51: V135T, Q334P; RT-p66: V135T, Q334P, R461K, T477A; gp120: N102T, -112N, -116S, I255N, -322K, -324I, S335P, G361K, -377S, -384D; gp41: D109N, N125S, Q199K, G226D, F329I; nef: S8C, A83S, E201N; rev: P92L; vif: Y44F, E127G; vpr: T19A; vpu: T24I, E40Q, E60D, L61T, A62E, A63E, V65A, E66T, M67L, G68-, D69V, F70E, D71M, -72G, -73D, -74F, -75D"}},"children":[{"name":"AY612637","node_attrs":{"div":0.14611999999999997,"accession":"AY612637","clade_membership":{"value":"G"},"country":{"value":"PT"},"Strain_name":{"value":"PT2695"},"LANL_subtype":{"value":"G"}},"branch_attrs":{"mutations":{"nuc":["C179A","C217A","A286G","T302A","G463A","G519A","G527A","G654A","A675C","C950T","C988A","T1299C","A1359T","T1481C","T1598C","A1694C","-1775C","-1782T","G1794A","C1960T","T2104C","G2182A","A2233G","C2266T","G2389A","G2428A","A2611G","T2689C","G2727A","G2761A","T2803C","A2809G","A2842G","G2921A","G3010A","G3016A","T3096C","A3099G","T3121C","G3398A","C3399T","A3448G","G3477A","A3491G","A3523G","G3563A","T3566C","C3577T","G3626A","G3630A","G3816A","G3834A","A3868G","T3967C","A3988G","A4107G","T4123C","A4175G","A4420G","A4466C","A4644G","T4702C","G4726T","A4748C","T4835C","G4913A","A4956T","T5047C","C5221T","G5302A","C5303T","G5308A","T5356C","A5461G","T5562C","A5564C","C5585G","T5604G","C5614T","A5621G","C5627T","A5718C","A5793C","C5808T","G5839A","T5980C","C6026A","A6031G","T6151C","A6177T","A6186G","-6195G","A6200G","-6201T","C6202A","-6204C","-6205C","T6213G","A6214C","-6215A","-6216C","-6217T","A6219T","C6220G","-6222G","G6267A","A6273G","A6276G","C6298T","G6323A","T6334G","A6464G","C6483T","A6553G","T6556C","A6574G","A6604G","G6628A","T6634C","A6644G","A6647C","A6648C","A6655G","A6659G","C6673T","C6697T","G6732A","C6777T","G6779A","A6780G","A6785G","T6787A","T6795A","A6818G","G6821A","C6826A","-6830A","-6831A","-6832A","C6835G","A6839-","A6840-","G6841-","A6842-","C6844-","T6860C","C6862T","A6900T","A6912G","C6919T","A6936C","-6953A","-6954G","T6957C","-6966A","-6969G","-6971A","-6972G","-6974A","-6975A","-6976T","T7009C","C7089A","C7114T","G7147T","A7151G","A7152G","C7182T","G7259A","T7432C","A7572G","C7582T","G7631C","A7701C","A7711G","G7753A","A7772G","G7773A","A7800G","C7801A","G7957A","G7980A","G8001A","A8023G","C8047T","G8050A","G8079A","G8137T","A8184G","T8213A","T8256C","T8288A","G8330C","C8336T","A8364T","A8409G","C8415T","G8526A","A8528T","G8570A","G8589A","T8597G","T8636A","A8663G","C8723T","C8921T","C8945T","C9017T"],"INT":["R14K","R20K","K111R","N134D"],"RT-p51":["S211N","V276I","D335G","A435I"],"RT-p66":["S211N","V276I","D335G","A435I","I466V","G490R","S491P","D511N","R512K"],"gp120":["L58M","E59K","-111I","N113V","-114T","-117G","-118S","-119T","-120A","-121G","-122Y","-123R","G124E","R138K","K140R","K141R","D157N","N159G","N160R","P210L","I264V","N265P","T269A","N272S","S280R","A291T","T292D","G293A","D294I","T308I","E309R","N311E","I314K","K319A","K322E","E323K","-326K","-327K","K329I","I331-","T332-","S336P","S337A","N349I","E353G","K361A","-371S","-372L","-375S","N378S","-379N","A412E","K418M","T436E","N437T","A443V","A469T"],"gp41":["K90R","E110Q","N133T","S157D","N166R","R259H","Q294R","F304I","V318A","A343L"],"nef":["T23A","P25S","E62N","F85L","D98E"],"p17":["R43K","G62R","A107T","K114Q"],"p24":["T210S"],"p6":["E32D","A39T"],"rev":["V16A","Q24E","A37T","I59V","A68T","V97L"],"tat":["K63T","P70R","G83D"],"vif":["T20A","F39S","R47M","E54D","I124L","V154A"],"vpr":["I84T"],"vpu":["P3S","E5G","A7F","K37N","E62D","V78I"]},"labels":{"aa":"INT: R14K, R20K, K111R, N134D; RT-p51: S211N, V276I, D335G, A435I; RT-p66: S211N, V276I, D335G, A435I, I466V, G490R, S491P, D511N, R512K; gp120: L58M, E59K, -111I, N113V, -114T, -117G, -118S, -119T, -120A, -121G, -122Y, -123R, G124E, R138K, K140R, K141R, D157N, N159G, N160R, P210L, I264V, N265P, T269A, N272S, S280R, A291T, T292D, G293A, D294I, T308I, E309R, N311E, I314K, K319A, K322E, E323K, -326K, -327K, K329I, I331-, T332-, S336P, S337A, N349I, E353G, K361A, -371S, -372L, -375S, N378S, -379N, A412E, K418M, T436E, N437T, A443V, A469T; gp41: K90R, E110Q, N133T, S157D, N166R, R259H, Q294R, F304I, V318A, A343L; nef: T23A, P25S, E62N, F85L, D98E; p17: R43K, G62R, A107T, K114Q; p24: T210S; p6: E32D, A39T; rev: V16A, Q24E, A37T, I59V, A68T, V97L; tat: K63T, P70R, G83D; vif: T20A, F39S, R47M, E54D, I124L, V154A; vpr: I84T; vpu: P3S, E5G, A7F, K37N, E62D, 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L74I, I101L, A124Q, N134S, S206T, I267V, I268L; RT-p51: E122K, G196E, E207G, S251I, K281R, A286T, D335E, R357K, T377V; RT-p66: E122K, S123D, G196E, E207G, S251I, K281R, A286T, D335E, R357K, T377V, I467V, H480Q, Q509I, K527N, S554N; gp120: S1N, T22A, A32S, K37R, V40I, T57I, E59K, N71P, N102K, -105D, -106Y, -109G, -111V, -112T, -113N, -114K, -115T, -116T, -117V, -119N, -120A, -121R, -122E, K127T, I133V, K141R, K142R, K143T, K150R, D157N, N158E, N159D, N160T, N161S, S162D, S181N, L198I, N206T, P210T, K212R, K224R, R245S, Q259R, L260F, E265K, N267K, T269I, I281F, K309E, N311E, E312G, Q315K, -318K, -319E, -322S, E323N, -324I, -326H, -327N, N328-, R351A, G361L, S365R, S366T, -367G, -368E, K391N, R401K, A412E, N432K, T436S, N437S, T439I, R472K, E479G; gp41: T101A, D109S, Q147H, D153N, K154N, N160S, S165T, N166K, K172R, I175V, L204V, T208I, L209P, E215D, E220R, R221G, G225E, D232G, R233K, I235V, F263L, I264L, L265S, A267V, A268V, V271L, S277L, W286K, N287S, V290E, I309V, V321I, V322A, A325T, 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L102I, Q105H, D117E, K122Q, R130S, E134D, T170A, *193W; vpr: P85L, S96P; vpu: I6V, Y30A, K41S, 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I31V, K42R, S57G, I101L, V112M, N124G, T125A, N134D, T136K, Q137H, D207E; RT-p51: E122K, E207D, S251D, P272A, P294T, V329I, L334P, K356R, S359A, S379G, P435L; RT-p66: E122K, E207D, S251D, P272A, P294T, V329I, L334P, K356R, S359A, S379G, P435L, V458I, I466V, H480Q, Q524E, S554N; gp120: A2T, S3A, N5K, D19E, S57N, E74D, -111N, -125E, -126I, K127L, C129Y, I133M, I137V, P155Q, L156M, S161D, V170I, R201N, T210N, I249F, D251S, E262D, N267T, T269I, T308A, K309N, N311T, E312R, M313I, K316V, K329E, N330K, N334D, S336P, N349T, S365M, -367L, -370T, -379N, -380E, -381T, -382T, -383S, -385N, E436G, -437T, T439I, I468V, K472P, R474K; gp41: F8L, L9F, V72L, K77Q, I84L, D113N, S125N, S133N, E137I, D153G, K154E, W169R, K172Q, I222T, R231K, I235V, G290E, Q294R, A322V, R324G, C326G; nef: E15T, I20M, E28A, E63D, M79I, G83A, Q105K, D108E, N116H, C142P; p1: K4R; p17: G49D, T53S, G54A, K62I, Q65K, T81A, T84V, V104I, K110S, E114K, A115N, Q116S, K117Q, G123E, S125N; p2: G9S, A11S, A12T; p24: S14A, L83V, I91V, 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L340A, R342K, L345N; nef: S8N, E15R, Q50A, Q62E, G83E, Y120I, N126C, A151T, S163C, D205N, C206*; p1: N9H; p17: K18R, M31I, V35I, T53S, Q58K, K62Q, L68I, V82L, T84V, R91K, I107M, K110N, S121G, K122Q, N124-, S125-, S126-; p2: A10S; p24: L91I, P92A, T110N; p6: L1P, N3S, P5L, E19-, E20-, P25-, P30L, T35I; p7: K7R, R11K, R41K; pro: D37E, I82V; rev: V16I, S61T, S67P, H82T, D84N, D88A, S89T, R90G, P92S, T94S, G99R, V104G, S106H; tat: D2E, P6S, R57G, S62N; vif: H48D, L64I, D78E, H110Y, S116A, D117E, I128V, N140K, K151T, T157K, R160K, R167K, G182D, *193W; vpr: P10S, P37V, I61L, S93A, S96F; vpu: Q2H, S3A, I6V, A7S, A18T, K32R, 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R20K, I31V, N124T, N255S; RT-p51: W88C, A98S, K104R, D121H, S123D, I135K, I142V, S163T, I178L, E207Q, P272S, K390R, P435L; RT-p66: W88C, A98S, K104R, D121H, S123D, I135K, I142V, S163T, I178L, E207Q, P272S, K390R, P435L, Q470P, Q483L, V531I; gp120: T22A, D105N, -109L, S130T, I137L, K141S, L147I, K150R, L151S, P155Q, D157G, N158D, -160S, -161T, S162K, V170I, S181T, R201N, K203E, T208K, T246S, I249F, D251N, I255T, I257L, E262K, T263S, N272G, R280S, F289L, D294A, G296I, D297-, I298-, R299-, Q300-, A301-, H302-, C303-, N304-, V305-, S306-, K307-, T308-, K309-, W310-, T313-, L314-, Q315-, K316-, V317-, L321-, F325-, -326G, N328I, K329T, S337T, I343V, T344V, S347M, R351G, N358D, G361E, -365D, S366T, -367R, N369-, -378N, -379S, -381N, -382T, -383S, L425I, N432E, N433E, T436E, N437T, T439I, R472K; gp41: V2I, L4M, I24L, K77R, D113G, Q119E, S125N, Q129K, N160T, K172R, E223G, G225E, D230G, R231K, S256I, F263L, I264V, G281S, Q294R, I307T, I309V, V321L, N331H, L340A; nef: S9K, I10R, V11A, G12Q, P14S, E18A, R19K, I20M, A26T, G31E, R39K, G83A, Y135F, P150I, E152D, C169S, I173L, D177N, R178G, R184K, R196K, L198Q; p1: K4R, I5F, G11E; p17: A15K, M31L, E42D, A54G, Q58R, M61L, K62T, R91G, K95R, K110N, E114G, K117A, T120M, S125N; p2: A7V, A11S, I13M; p24: L91F, T116A, T210S, V230I; p6: L1I, S14N, P25S, P30Q, E32D; p7: K3R, S4-, P9T, R11G, N12K, E21D, E51Q, R52G; pro: L10I, D37N; rev: S56G, E57Q, Q74H, H82S, G99E, I102V; tat: K24N, V29K, T58A, P59S, G61S, K71E; vif: H27Y, I31R, G37N, L59V, D61E, K63M, R67K, K77R, Q91L, R92K, S116T, I128V, P131H, A152V, I159A, R160K, G182D, R184K, N186-, P187-, T188-, M189-, S190N, *193W; vpr: D7N, P14-, Y15-, N16-, E17-, P37I, I84L, P85L, R86Q, V89G, D91N; vpu: Q2T, E5V, I28V, R38K, D40E, K41Q, L43I, A50T, T66K, M71F, V72E, D73Q, 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P76H"}}},{"name":"KT276261","node_attrs":{"div":0.17796999999999996,"accession":"KT276261","clade_membership":{"value":"G"},"country":{"value":"ES"},"date":{"value":2014.0},"Strain_name":{"value":"ARP1201"},"LANL_subtype":{"value":"G"}},"branch_attrs":{"mutations":{"nuc":["A161T","T165G","T201C","-217T","A263G","-280G","A371G","A419G","G424A","A426T","A437G","G461T","A516T","A519C","G524A","G554A","T560C","A563G","A566T","G608A","C636G","G641T","G642A","A651C","A654T","A665C","G675A","A678G","A684G","-693A","-694C","-695A","G696A","A706G","C722T","T734C","A776G","A779G","A791G","A809C","A818G","G821A","C824T","A836G","A860G","T974C","C978A","A980G","T983C","C988A","A989G","G992A","T1058C","C1060A","A1077G","G1090A","C1103T","A1133C","G1247A","C1292G","G1313A","A1355G","A1388G","C1403T","A1404G","G1419A","A1476G","A1486G","G1495A","A1586T","A1670G","T1676C","C1680G","C1693T","G1720T","A1733G","C1768A","-1782T","T1790C","C1825A","C1831T","A1832G","A1841G","A1851G","A1933G","T2080C","C2149A","A2164G","C2211A","A2212T","C2326T","C2335T","C2452T","C2464T","T2467C","C2485T","T2488C","G2518A","A2524G","A2545C","A2560G","A2616G","A2627T","G2632A","G2675A","A2698G","A2755G","A2821G","A2869G","A2872G","A2925G","A2929G","A2974G","A2989G","A3043G","C3067A","G3080A","A3230G","G3293C","C3322T","T3349C","T3355C","A3370G","T3376C","A3386C","A3451G","A3477G","A3491G","T3541C","A3565G","G3569A","A3607G","A3622G","C3665A","C3668T","G3679A","C3688T","C3691T","A3703G","T3721A","A3727T","T3742C","T3746C","G3816A","G3825A","A3835G","A3866G","G3919A","C3940T","T3943C","A4030G","A4178G","A4186G","T4192C","G4306A","G4366A","G4372A","A4397C","A4410C","A4414C","A4543C","A4546T","A4555G","A4564G","T4585C","G4636A","A4644G","A4693G","G4735A","A4816G","G4848A","A4860G","G4870A","G4896A","G4935A","A4968T","C5018T","A5021G","A5049C","A5051G","C5052T","T5062C","G5123A","A5140G","G5159A","A5187G","T5203C","C5213A","C5214T","C5221A","A5224G","A5284C","T5292G","A5293C","A5296G","A5312G","-5320T","A5335G","T5357C","G5385A","A5448G","C5451T","T5483C","C5491T","C5502G","G5557A","A5563C","A5594G","G5599A","A5611C","A5621T","C5627T","G5629T","A5644G","A5652T","C5664A","G5715A","T5731A","C5763T","A5781G","-5799T","-5811G","G5902A","T5911A","A5950C","A5957C","C5989A","C6004T","A6023G","C6024A","G6028A","A6030T","A6037G","T6163C","A6167G","-6170T","A6176-","A6177-","T6178-","A6182-","A6188G","C6189G","C6190G","T6196C","G6203C","-6205C","-6207G","A6208C","-6211G","A6212C","A6214G","-6215A","-6217G","-6218G","-6219A","-6220A","-6221G","-6222A","-6223A","-6224C","-6225C","-6226A","-6227A","-6229A","-6230T","C6238T","T6242A","G6267A","A6268C","A6275C","G6280A","A6286G","T6287C","C6318A","A6330G","-6332G","-6337T","G6391A","C6396G","A6406T","G6436A","A6461G","A6483T","A6488C","G6532A","G6533A","A6544G","C6551T","T6563G","G6566A","G6572A","A6578G","G6588A","A6594C","A6602T","T6618A","G6628A","G6631A","A6635G","G6638A","A6641G","G6647A","A6649C","A6654C","C6670T","A6684G","A6685G","A6694G","T6745C","C6758T","T6760C","A6764T","A6765G","T6766G","G6771A","-6774A","-6785C","A6786T","G6790C","A6796G","C6797G","-6806C","G6821C","G6823A","T6827C","-6830A","-6831A","-6832C","T6835C","-6841A","A6905G","-6949G","-6950A","-6951G","-6952C","-6953A","-6955A","-6956T","-6957C","-6962A","-6963T","-6964C","-6968A","-6970A","-6984C","-6985A","-6988C","-6989A","C7014T","G7060A","T7096C","G7107T","A7108G","T7127A","G7145A","G7146T","A7147T","A7151G","A7155G","T7156C","-7158C","-7161G","-7162A","-7163G","-7164G","-7165T","G7182C","G7198A","C7201T","G7225A","C7250T","G7303A","A7339G","C7429T","A7459C","T7555C","C7605G","T7630G","A7666T","C7678T","A7693C","C7702A","A7713C","G7765A","C7770A","A7771C","T7775C","C7921T","A7931C","G7970A","A7992G","A7998G","G8019A","C8048T","C8051A","C8092T","A8093G","G8117C","T8164C","T8171G","A8191G","T8197G","T8203A","A8208G","G8212A","C8213G","A8222T","A8233T","T8279G","T8290C","C8293T","C8320G","T8321G","T8322C","T8337A","G8365A","G8373T","G8385A","G8388A","A8396G","A8402G","G8458A","C8471G","C8480T","C8490G","T8505G","G8506T","A8531T","G8537T","C8543G","G8561A","T8567C","G8570A","T8582C","G8588A","T8591A","T8600C","A8604G","A8643G","C8655A","C8666G","A8678C","C8684T","G8730A","G8731A","G8732A","A8739G","C8740T","T8746A","G8786A","G8808A","C8809A","G8818A","T8832C","A8879G","G8945C","T9019G","C9068T"],"INT":["R14K","S17N","I31V","I135V","I208L","E212A","E256D"],"RT-p51":["T39N","K174R","I178L","E194K","E207D","K277R","D324E","V329I","S379G","V400L","T431P"],"RT-p66":["T39N","K174R","I178L","E194K","E207D","K277R","D324E","V329I","S379G","V400L","T431P","K461R","I466V","E492K"],"gp120":["D19E","T35P","-57D","E59V","V106S","K107-","N108-","-111N","-112G","-113N","-114S","-115T","-116S","-122E","-123E","-124P","-125K","-126L","S130T","R138N","K141Q","Y145H","P155Q","N159S","-160D","R201K","K203E","Q210I","K212Q","V227I","L237V","A238T","E240K","I242V","R245K","E247A","T250S","I255N","N261D","E262K","T263A","E265N","N267T","K277R","V288A","T292K","H302Y","N304W","S306N","-311L","-312N","T313M","Q315E","-318Q","-322K","-324Q","F325V","-326L","-327N","T330N","R351G","-367I","-368S","-370I","-379N","-381T","-382N","T387I","R418M","L425I","G431I","N433S","N434T","-435G","-436G","G443A"],"gp41":["V2A","Q52H","T101S","D109E","E121D","Q130H","S133T","E137A","A156D","T210P","E223K","D230G","D232G","S239N","I264V","E272Q","N298K","N302S","L304V","I307L","C326G","L340A","L345Q"],"nef":["S8N","E15K","V16I","I20M","R39K","Q50E","C55V","E63D","S88G","I101V","Q105K","D108E","G130K","I133V","A156N","G159E","E201D"],"p17":["R30K","E42D","M61L","K62R","L101V","E102D","E103K","K106Q","I107L","K110N","E114K","T115A","K117E","N124S"],"p24":["L83M","T110N","T116A","S120N","D187E","S225G","V230I"],"p6":["L1V","P5L","S14I","P24S","P30Q","T35S","P49Q","S51L"],"p7":["S4G","K7R","R10K"],"pro":["L10I","T12A","I15V","Q18R"],"rev":["Y28S","R41Q","S67L","A68E","H82C","R90T","G99R","S106P","K115E","*117E"],"tat":["V36A","G61S","K63Q","L74F"],"vif":["R17K","T20A","K36R","R50K","K77R","E88K","R92G","S95N","D104N","E117K","I128L","T155P","P156S","I159T","E185G"],"vpr":["D7N","A19T","N28S","P37I","I63S","I70V","Q77R","G94S"],"vpu":["E5V","A7F","A8S","I13V","L42I"]},"labels":{"aa":"INT: R14K, S17N, I31V, I135V, I208L, E212A, E256D; RT-p51: T39N, K174R, I178L, E194K, E207D, K277R, D324E, V329I, S379G, V400L, T431P; RT-p66: T39N, K174R, I178L, E194K, E207D, K277R, D324E, V329I, S379G, V400L, T431P, K461R, I466V, E492K; gp120: D19E, T35P, -57D, E59V, V106S, K107-, N108-, -111N, -112G, -113N, -114S, -115T, -116S, -122E, -123E, -124P, -125K, -126L, S130T, R138N, K141Q, Y145H, P155Q, N159S, -160D, R201K, K203E, Q210I, K212Q, V227I, L237V, A238T, E240K, I242V, R245K, E247A, T250S, I255N, N261D, E262K, T263A, E265N, N267T, K277R, V288A, T292K, H302Y, N304W, S306N, -311L, -312N, T313M, Q315E, -318Q, -322K, -324Q, F325V, -326L, -327N, T330N, R351G, -367I, -368S, -370I, -379N, -381T, -382N, T387I, R418M, L425I, G431I, N433S, N434T, -435G, -436G, G443A; gp41: V2A, Q52H, T101S, D109E, E121D, Q130H, S133T, E137A, A156D, T210P, E223K, D230G, D232G, S239N, I264V, E272Q, N298K, N302S, L304V, I307L, C326G, L340A, L345Q; nef: S8N, E15K, V16I, I20M, R39K, Q50E, C55V, E63D, S88G, I101V, Q105K, D108E, G130K, I133V, A156N, G159E, E201D; p17: R30K, E42D, M61L, K62R, L101V, E102D, E103K, K106Q, I107L, K110N, E114K, T115A, K117E, N124S; p24: L83M, T110N, T116A, S120N, D187E, S225G, V230I; p6: L1V, P5L, S14I, P24S, P30Q, T35S, P49Q, S51L; p7: S4G, K7R, R10K; pro: L10I, T12A, I15V, Q18R; rev: Y28S, R41Q, S67L, A68E, H82C, R90T, G99R, S106P, K115E, *117E; tat: V36A, G61S, K63Q, L74F; vif: R17K, T20A, K36R, R50K, K77R, E88K, R92G, S95N, D104N, E117K, I128L, T155P, P156S, I159T, E185G; vpr: D7N, A19T, N28S, P37I, I63S, I70V, Q77R, G94S; vpu: E5V, A7F, A8S, I13V, 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V14A"}}},{"name":"CRF116_0108_NODE_0000001","node_attrs":{"div":0.11486999999999999,"clade_membership":{"value":"CRF116_0108"}},"branch_attrs":{"mutations":{"nuc":["G463A","G519A","A540C","A618C","A663G","C1061T","A1359T","C1491T","C1680A","A1861G","T2062C","A2170C","A2202C","T2440C","G2459A","T2631A","G2830T","A3124G","T3492G","G3631A","A4000G","G4464A","C4826A","A4900G","G5087A","A5302G","G5531T","A5711G","A6167T","A6168C","T6184A","A6185G","C6189A","A6275C","A6338G","A6394G","A6430G","C6692A","A6785T","A6810G","A6891T","T7059C","A7297G","A7542C","T7801A","A7880G","G8036T","A8076G","A8739G","G8864T","A8967C","C8990T"],"INT":["S230N"],"RT-p51":["E36A","E122K","V179D","E245H"],"RT-p66":["E36A","E122K","V179D","E245H","L452I","I466C"],"gp120":["K141Q","K150R","S162E","I180M","H280T","N311Y","Q316K","H346L"],"gp41":["M54L","K80T","N166K","I193V","V245F","H258R"],"nef":["E174D"],"p17":["R43K","E62K","K69Q","K110E"],"p24":["T210S"],"p6":["L1I"],"rev":["C63F"],"vif":["H80Q","Q105R"],"vpu":["K35R","K44E"]},"labels":{"aa":"INT: 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K66R"}}},{"name":"MT624748","node_attrs":{"div":0.12785,"accession":"MT624748","clade_membership":{"value":"CRF116_0108"},"country":{"value":"CN"},"date":{"value":2014.0},"Strain_name":{"value":"14YN264"},"LANL_subtype":{"value":"CRF116_0108"}},"branch_attrs":{"mutations":{"nuc":["A613C","G651A","A908T","T988C","T992G","A1101G","A1142G","G1151A","T1262C","G1354C","A1476G","T1482C","G1715A","G1720A","A1804G","A2113C","A2127G","A2925G","T2935C","C3128A","G3151A","A3264G","G3280A","C3307A","A3448G","C3466T","T3544C","A3622G","C3665G","G3684A","G3697A","T3904C","G3952A","T4117C","T4198C","A4239C","A4498G","A4677G","A4689G","A4695C","A4760G","G4769A","C4820T","G4869A","A4913G","G4966A","A4994C","A5124G","C5147T","A5154C","A5223T","G5236A","G5312A","T5354C","G5385A","G5418A","A5453T","A5499G","A5545G","A5611T","A5622G","A5623C","G5700A","G5729A","A6113G","C6187T","A6194T","A6195C","G6197A","A6198C","C6201A","T6202C","-6204T","C6205A","A6206G","T6210A","A6211T","G6212C","G6213T","A6225G","G6234A","G6277A","A6317C","A6333G","G6375A","C6563T","A6581G","A6638G","A6806G","C6824A","-6833C","-6834C","-6835T","A6839G","A6849G","A6850C","T6876C","A6937T","G6951A","A6960G","-6985A","G6986A","A6988T","A6989G","C6990A","C6991A","T6993C","G6994C","G6995A","G6997A","T6998G","T7000G","A7001T","A7002G","A7005G","C7019A","C7020T","A7152T","-7162G","A7269G","C7631G","A7655G","T7708C","A8032T","G8055A","T8113A","G8239A","A8271G","A8294C","A8337T","T8366G","A8400T","A8458G","A8469G","G8738A","T8746A","C8809A","G8823A","T8829A","T8831C","A8844G","G8914A","A8922G","-8972C","-8974G","T9012A"],"INT":["N155T"],"RT-p51":["E6D","K11R","K277R","P345T","K390R","D404E"],"RT-p66":["E6D","K11R","K277R","P345T","K390R","D404E","Q524E","R530K"],"gp120":["S87G","N105D","-106S","N107T","-109I","T110G","-112L","N113T","D124G","R127K","K155Q","N160S","R174K","I243V","K262E","T318A","K319G","H324N","-326P","N328E","K329-","K332S","L341P","K361N","S366-","C367-","N369-","-378N","-379N","-380C","E381T","C382R","D384E","P389I","K414I","-433I","S435N","T436K","K472R"],"gp41":["Q110E","I118V","S251N","R277L","Q323R","N331H","Q345L"],"nef":["S8R","I20L","G29A","K39R","I43V","F135Y","A156D","D161N","C163S","I168V","R191H","I194V"],"p17":["E93A","E106K"],"p24":["V86A","H87Q","I124V","G208A"],"p6":["S14N","K42R"],"p7":["S4G","F6L"],"rev":["T62S","C89S"],"tat":["Y26F","R57G"],"vif":["I31V","T35A","K37Q","G95S","R127Q","I180V","N190H"],"vpr":["D7G","H15Y","E17A","H40L","V70I","G94S"],"vpu":["T2S","I6L","R41K"]},"labels":{"aa":"INT: 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K42R; p7: R10G, S50T; pro: K41R, I72V; rev: T8N, I18V, Y28P, S31A, H82S, V108G, I109V, T114A; tat: Q17R, H54Q, D64S, L74P, P75S, I77S, P84Q; vif: Q47R, E61K, I63T, D78G, R105Q, T155A, Q178H, E185D; vpr: E6Q, E13Q, H40L, N48S; vpu: E29Q, Y30L, Q36E, I43V, D73E"}}}]},{"name":"CRF69_01B_NODE_0000002","node_attrs":{"div":0.11526,"clade_membership":{"value":"CRF69_01B"}},"branch_attrs":{"mutations":{"nuc":["T3497C","C4754T","-6222A","-6225A","-6226T","-6229A","-6230G","C6692A","G6806A","-6955C","-6999G","-7000T","-7002A","-7005G","G7964A"],"RT-p66":["S468P"],"gp120":["-123K","-124D","N158D","A318T","I332N"],"gp41":["G221R","R324G"],"p17":["A107V"]},"labels":{"aa":"RT-p66: S468P; gp120: -123K, -124D, N158D, A318T, I332N; gp41: G221R, R324G; p17: 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L82V"}},"children":[{"name":"MW018130","node_attrs":{"div":0.18243,"accession":"MW018130","clade_membership":{"value":"other"},"country":{"value":"CN"},"date":{"value":2018.0},"Strain_name":{"value":"18110456"},"LANL_subtype":{"value":"CRF112_01B"}},"branch_attrs":{"mutations":{"nuc":["-179T","-180A","-217T","A278G","G279A","-280G","T396C","A398T","T485G","A497T","A518G","A576G","T636C","A644G","G716C","A725C","C771G","A797C","T824C","T917C","A944G","G977A","A980G","C983T","A989G","T1003A","C1005G","A1017C","G1022A","A1049C","A1070G","G1078C","G1090A","G1127A","G1139A","G1192A","C1235T","G1271A","A1278C","G1313A","T1322C","T1451A","-1452A","-1455A","-1456A","G1493C","A1495G","A1497G","G1498T","T1628G","A1642G","A1657G","G1661A","T1676C","A1701T","G1718A","A1719G","G1727A","-1730G","A1745C","C1749T","C1767A","-1776C","-1781T","-1783A","-1784T","-1785C","-1786C","T1854A","A1855G","A1857G","A1969G","C1985A","C1986T","T1987G","A1993G","A2008G","G2042A","T2095C","T2104C","G2155A","C2199T","G2210A","A2230G","A2273G","G2293A","C2335T","A2341G","C2353T","T2356C","A2380G","A2398G","G2401A","A2404G","G2422A","T2443C","G2462A","A2463G","C2467T","G2470A","T2499C","T2521C","C2540T","A2560G","A2579G","G2580C","C2605T","T2632C","G2660A","A2665C","C2684G","T2689C","C2694T","G2710A","A2715G","A2716T","G2722A","G2728C","T2735C","T2737G","C2740A","A2743C","A2755G","T2776C","G2828A","G2830A","A2839G","A2887G","C2909G","A2918C","C2930T","A3001G","A3073T","C3129A","T3132A","A3167G","A3200G","A3204C","T3253C","A3279G","A3302T","C3319T","C3322A","T3359C","C3415T","G3438A","C3449A","T3450C","A3451G","G3508T","A3562C","T3566C","A3583G","C3589T","C3610T","G3631C","A3671G","A3685G","G3694A","G3766A","G3770A","C3773T","A3808C","G3825C","C3826T","A3845G","G3846A","T3850A","T3856C","A3866G","A3868G","C3922A","A3923T","G3952A","T3962C","C3991T","C4006T","A4057G","G4063A","A4076C","C4079T","A4084G","A4107G","G4109A","T4110C","A4112G","T4129C","G4145A","A4159C","T4177G","G4178A","C4181A","A4183G","G4264A","G4268A","A4279G","A4376G","A4384G","T4412C","A4420G","A4427T","C4471T","A4475C","A4495G","A4498C","C4534T","A4555G","G4622A","G4631A","G4642A","A4644G","G4677T","T4678G","C4679T","A4697T","T4702C","G4708A","T4715C","C4724T","A4726T","A4727T","G4737A","A4766G","G4769C","A4778G","A4785G","A4786T","G4799A","A4805T","T4820C","G4855A","C4857A","G4859A","A4860G","G4861A","A4862G","G4887A","C4889A","T4912A","T4919C","G4949A","A4952G","T4967C","A4968T","G4981T","G4982T","A5024G","G5036A","A5037G","T5043C","A5051G","A5059G","T5062A","A5069G","C5073T","A5086C","G5087A","A5093G","A5122G","G5128A","A5143G","C5146A","A5150G","A5151C","A5200G","T5209C","C5213G","C5214T","C5215G","C5221T","G5236A","C5239T","C5248A","T5251C","G5272A","T5275G","T5281C","T5294C","A5305G","C5306A","G5312A","T5314C","T5327G","G5330A","T5333C","A5345G","T5354C","T5356C","G5357T","C5359G","G5361C","G5362A","A5366G","G5371C","C5372A","G5375A","G5382A","T5391C","A5396G","C5432A","A5433G","G5444C","A5446T","A5447C","T5451C","C5454T","A5463G","G5471A","G5472T","A5480C","C5482G","A5484T","C5491A","G5493A","A5494T","A5495C","A5537G","A5581G","G5599C","G5620C","C5641T","G5643A","A5644G","T5660C","A5670T","G5686C","C5687T","A5706T","G5717A","A5718G","A5742G","T5793C","A5848G","T5870C","T5899A","G5915A","C5944T","A5955T","C5984T","C5989T","C6004T","T6024C","C6026A","C6052T","C6097T","T6142C","C6145A","C6148T","A6159G","T6160A","A6167G","-6172G","A6179C","T6181C","A6185G","T6187G","C6189A","A6192C","T6193A","G6195C","A6197T","-6198T","-6202C","G6207A","-6210C","-6211A","A6212G","T6213G","-6217G","A6219T","-6222A","-6225A","-6226A","-6229T","-6230G","T6241C","T6250C","G6260T","A6266T","A6303G","C6317T","A6326G","T6328G","A6329T","A6330C","A6333G","A6335G","A6338G","-6340G","G6376A","T6395A","T6421C","C6496T","C6548T","C6559A","C6563T","T6598C","C6599A","C6632T","T6634G","G6644A","G6693C","-6697G","A6703-","C6713A","A6734G","T6735A","A6736C","G6743A","A6754G","A6757C","G6773A","G6774A","A6780T","A6797G","A6798G","A6818C","C6826T","T6853C","A6856G","A6859G","C6861A","A6868G","T6943C","-6956G","-6957A","-6958A","-6959A","-6960A","-6961T","-6968G","-6969G","-6970G","-6971A","-6972T","-6973C","-6974A","-6975T","-6976G","-6977A","-6978A","-6979G","-6980G","-6981G","-6982G","-6983G","-6984G","-6985T","-6986A","-6987A","-6988T","-6989G","-6991C","-6993C","-6994T","-6995A","T7000C","-7002A","-7005C","C7008T","T7009A","C7012A","A7013-","T7014-","A7015-","G7054A","A7063G","T7081C","A7094G","A7095T","A7152C","A7155G","T7156C","A7157G","A7160C","A7161C","-7164G","A7193C","A7225G","G7269A","G7276A","A7313C","A7373T","A7399T","G7534A","A7570C","C7597T","A7646C","T7675C","C7691A","A7703T","A7705G","A7721G","G7750A","T7757C","G7759T","T7774C","A7800G","A7818G","A7847G","T7865G","C7874T","G7915A","C7926T","A7931T","T7932C","A7977G","G8001A","A8002G","A8023G","G8036A","C8092A","A8093C","C8106T","G8130A","C8131A","C8149G","T8196C","T8206C","G8219A","G8231A","C8232T","C8268T","A8273G","T8279G","A8284G","T828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E11D, S17T, S24D, D25E, I31V, M50L, K111R, I113V, A124T, V165I, I201V, I203M, T218S, I234L, G283S, D286N; RT-p51: T35V, I60V, D123S, I135T, S162A, V189I, Q197E, T200I, Q207G, R211S, F214L, E245K, K275Q, E312N, P345Q, F346Y, R358G, T369A, E370A, K395R, T403S; RT-p66: T35V, I60V, D123S, I135T, S162A, V189I, Q197E, T200I, Q207G, R211S, F214L, E245K, K275Q, E312N, P345Q, F346Y, R358G, T369A, E370A, K395R, T403S, R448K, L452T, E471D, S491P, K512S, I526V, V559I; gp120: D21N, E34V, H44Y, L58M, N102R, -105D, -106V, -107N, -109K, N113-, -124G, R138S, K150R, P155S, N158E, N159S, N160S, S161G, S181T, L249I, V264I, H280P, I281M, Q287K, D297N, G307K, K309I, K315G, K322Q, K332R, P336H, K361N, -368E, -369N, -382G, -383I, -384M, N414V, -433T, N434S, N435D, T436P, N437S, I447L, R472K; gp41: I4L, I24L, Q32H, M115L, Q130K, I134L, N140D, N166S, K172R, I182V, F188V, L191F, T208I, T210S, E225G, R233K, A245I, F263L, I264L, A268V, A306T, T307V, A310I, A322V, R324G, W326G; nef: I10V, T23A, C55M, R59E, K82R, G83A, F85L, F89H, E98D, G99R, E108D, Q125D, D149E, P150V, R151-, E152-, V153-, S169N, E174D, E176P, A188S, R191F, K192H, I194K, K204T, D205N; p1: K4R, N9S; p17: I61M, T81A, E93D, K127N, Q130H; p24: P14A, I91N, P92A, M96L, G116A, S120N, R154K, N183H; p6: T8S, S14D, T23S, Q26-, P30K, K33Q, -36P; p7: Q9H, K10R, R11V; pro: L19Q, K20R, P63M, V82I; rev: S7N, T8A, Y28F, I52V, I59V, C63Y, H82T, Q95K, Q101E; tat: N7S, N12K, T19K, S23T, N24S, W32Y, Q35P, L36V, L39I, K40S, H54R, I69V, P73S, S75P; vif: R19K, T20A, V31C, F39S, R41K, R47I, V51I, E61D, R67V, Q73H, R90K, Q91K, R92E, D101K, L109Q, I128L, R130S, R132I, T151A, K158R, I159K, K167T, K179R, R181K, N186S, P187H, M189L; vpr: N16A, P37V, N48E, E55A, L68M, V70I, I74M, I84T, P85R, G86Q, G89A, A93T, S96P; vpu: E5Q, I13V, L18S, A27L, R37K, 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P76H"}}},{"name":"MK397789","node_attrs":{"div":0.25556999999999996,"accession":"MK397789","clade_membership":{"value":"other"},"country":{"value":"CN"},"date":{"value":2017.0},"Strain_name":{"value":"17ZJ075"},"LANL_subtype":{"value":"CRF117_0107"}},"branch_attrs":{"mutations":{"nuc":["A168-","A169-","A170-","T172-","C173-","G181-","T182-","T200G","T201C","A224G","A278G","-280G","A286G","A302T","-305A","G365C","A418G","C419T","T424G","G463A","A497G","T571A","T572C","C618A","G619T","C635T","T668C","A678G","A701-","G702-","G703-","A704-","-711A","-712A","-713G","-714A","A852T","A1010G","A1029-","G1089A","A1092-","C1187-","G1298A","G1313A","A1340G","T1451G","G1458A","G1469A","A1475T","C1514T","A1580G","T1652C","T1676C","A1743G","G1760A","A1770G","C1826A","T1828G","A2006C","T2035A","C2202A","T2212G","A2230G","G2329A","A2374G","T2383C","T2456C","C2467T","T2494C","C2533T","G2602A","A2629G","A2665G","T2737C","T2779G","C2806T","A2836G","T3045C","G3085A","C3133T","A3148G","A3268G","A3280G","G3292A","C3358T","C3399T","T3492C","C3500T","T3505G","A3562C","T3602C","C3618T","T3628C","T3668C","C3688T","T3754C","A3874G","T3970C","A4027G","C4042T","T4075C","T4444C","C4445T","T4476G","A4546C","G4687A","T4701G","G4737A","T4761G","G4855T","G4861A","C4878T","T4911A","C4937A","T5006C","T5028C","A5059G","T5062C","T5072C","T5081C","A5134G","G5137A","G5257A","C5268A","A5269G","T5314G","T5457C","T5492C","G5546C","T5568C","A5581C","G5599T","T5600-","A5601-","C5613T","T5616C","G5619A","G5692C","A5694G","T5695G","A5696C","A5699G","A5701G","A5720G","G5734A","C5756A","A5757G","C5763T","A5781G","-5799G","G5851T","G5856A","A5947G","G5956T","T5964C","G5972A","T6023C","C6026A","A6044T","T6076G","A6103G","A6119C","A6158C","T6166C","-6180T","T6181A","A6188G","C6189T","C6191T","A6192C","-6198T","-6199A","-6201C","-6203G","-6204G","-6205A","-6208T","T6210C","-6211T","-6213T","-6218G","A6219G","A6230G","T6242A","G6267A","T6271C","G6274A","T6287C","T6289G","G6290T","T6301C","A6303G","G6304A","T6307A","A6311C","A6333G","G6339A","T6340G","G6346A","A6394G","C6416T","A6438T","A6443C","C6496T","C6618T","C6619T","C6631T","G6638A","A6689G","A6695T","-6697T","A6703-","A6725C","G6726A","A6752G","A6753C","A6764G","A6786G","T6787G","A6788G","A6806G","A6825G","C6833A","C6849T","A6854C","G6906A","T6925C","T6928C","A6931T","A6947T","T6949C","-6956C","T6957A","-6961T","-6962G","-6963G","-6964A","-6965A","-6966C","-6967C","A6990T","C6993A","-6995G","-6996G","-6997G","C7006A","C7012T","C7016A","G7026A","G7027A","A7030C","G7055A","G7058A","T7059C","G7072A","G7089A","G7132A","-7147T","-7148G","-7149T","A7155G","A7158C","T7159A","A7161T","C7164A","A7165T","T7180G","G7190A","G7195A","T7204C","A7275G","G7276A","G7289C","G7441A","A7463C","A7471G","C7474A","C7561A","A7630G","A7689G","A7691C","C7692A","C7706A","G7712C","A7721G","A7753G","G7769A","G7773A","G7790A","C7825T","C7843T","T7879C","G7885A","C7959T","A8032G","C8037T","C8044G","T8112G","G8159-","T8164G","C8165T","A8196G","T8321C","T8332G","G8373A","A8385G","A8386C","A8400T","G8402A","A8446G","T8462C","A8469G","G8520A","G8528A","G8561A","A8576C","G8590C","T8636A","T8740C","G8795T","C8903G","C8913A","G8914A","A8922T","C8930T","C9068T","T9097C","A9099G","T9160A"],"INT":["R224W","I234S"],"RT-p51":["A36E","D39E","Y121H","I178M","V317A","A435V"],"RT-p66":["A36E","D39E","Y121H","I178M","V317A","A435V","V466A"],"gp120":["S1N","E34D","V37A","V40I","F57L","L58M","N64Y","K89Q","N102H","-105Q","-107N","-111D","I126V","S130T","E136V","R138K","Y145Q","A146S","K150R","I153L","N157G","N161S","V180M","H188Y","Y195F","I197L","T255I","E262K","I279-","I281-","G284-","P285-","G286-","Q287-","F289-","Y290V","R291T","T292F","D294P","K300A","N311R","K312E","T318A","Q324R","-328N","T332I","K334Q","R351K","-365Y","-368Q","-369S","-370G","-371T","-372I","-373N","-376G","-377D","-378N","-379G","-380T","L388I","R391K","G401R","V402T","M406I","S412K","N414K","N432V","N434S","-435T","-436V","D446N","M447I","K474R","E479Q"],"gp41":["M54L","N129S","T130Q","D133E","L135I","E137Q","N140D","K144R","A156T","S157N","D163N","P219L","A245V","D247E","V270G","G286-"],"nef":["V11I","M20L","Q35R","I43V","A60T","G83A","I133T","R151S","S187R","R191N","R194W"],"p17":["H28R","M30R","R43K","F79Y","R95I","T115A","-122K","-123K"],"p2":["-7T","T8N","N9R","S10-","-12T"],"p24":["T41S","R100-"],"p6":["I21T","T22A","I31V","L50W"],"p7":["M1I","R3S"],"pro":["L10M","K70Q"],"rev":["E11Q","I18T","T62A","R66G","S67P","S88R"],"tat":["I39T","R57T","I69L","P84S"],"vif":["R34K","K36N","F39V","V51I","L59V","R90I","R92K","L109M","D117E","K158R","I159T","H183R","R184K"],"vpr":["A55E"],"vpu":["E29Q","Y30A","K31R","K32E","K38R","V43I","A50E","V82L"]},"labels":{"aa":"INT: R224W, I234S; RT-p51: A36E, D39E, Y121H, I178M, V317A, A435V; RT-p66: A36E, D39E, Y121H, I178M, V317A, A435V, V466A; gp120: S1N, E34D, V37A, V40I, F57L, L58M, N64Y, K89Q, N102H, -105Q, -107N, -111D, I126V, S130T, E136V, R138K, Y145Q, A146S, K150R, I153L, N157G, N161S, V180M, H188Y, Y195F, I197L, T255I, E262K, I279-, I281-, G284-, P285-, G286-, Q287-, F289-, Y290V, R291T, T292F, D294P, K300A, N311R, K312E, T318A, Q324R, -328N, T332I, K334Q, R351K, -365Y, -368Q, -369S, -370G, -371T, -372I, -373N, -376G, -377D, -378N, -379G, -380T, L388I, R391K, G401R, V402T, M406I, S412K, N414K, N432V, N434S, -435T, -436V, D446N, M447I, K474R, E479Q; gp41: M54L, N129S, T130Q, D133E, L135I, E137Q, N140D, K144R, A156T, S157N, D163N, P219L, A245V, D247E, V270G, G286-; nef: V11I, M20L, Q35R, I43V, A60T, G83A, I133T, R151S, S187R, R191N, R194W; p17: H28R, M30R, R43K, F79Y, R95I, T115A, -122K, -123K; p2: -7T, T8N, N9R, S10-, -12T; p24: T41S, R100-; p6: I21T, T22A, I31V, L50W; p7: M1I, R3S; pro: L10M, K70Q; rev: E11Q, I18T, T62A, R66G, S67P, S88R; tat: I39T, R57T, I69L, P84S; vif: R34K, K36N, F39V, V51I, L59V, R90I, R92K, L109M, D117E, K158R, I159T, H183R, R184K; vpr: A55E; vpu: E29Q, Y30A, K31R, K32E, K38R, V43I, A50E, 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I21V, R38Q, R50N, A62S, R80G, P100S, T114A; tat: Y26F, K40T, N67S, P68L, P70S, P81T; vif: E45D, K63R, I87V, R93K, K160R, N176K; vpr: G41S, I46V, E48D, T49N, A55T, F72Y, Q77H, I84V; vpu: T2L, P3D, I6S, S7A, A8L, I9A, A19V, F27Y, I33L, L34V, D62E, A65S, K66T, E70D, F74L, D75R, P76L, W77L, 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pro: K41R, I62V, L63S, I64V, M89L; rev: A15T, I21L, T34S, A47E, Q51H, E57D, C63Y, D88G, I102V, A108P; tat: K19G, A21P, N23T, K24A, W32F, L39I, G42A, S61D, K63E, P68S, D80E; vif: K77Q, H80Q, R93G, R130I, P131H, K158R, T188I, N190H; vpr: E17A, F72Y, S96P; vpu: T2S, E5D, V21I, T24S, R47A"}},"children":[{"name":"KJ485697","node_attrs":{"div":0.17234000000000002,"accession":"KJ485697","clade_membership":{"value":"other"},"country":{"value":"MY"},"date":{"value":2011.0},"Strain_name":{"value":"11MYKL055"},"LANL_subtype":{"value":"CRF51_01B"}},"branch_attrs":{"mutations":{"nuc":["A425G","A435T","A437G","T571A","G712A","A715C","C719T","G818A","G1090A","C1175T","A1340G","A1343C","G1346A","A1359T","T1363C","T1484C","G1498A","A1587C","G1589A","G1736A","A1832G","G1845A","A2075C","T2077C","A2368G","G2422A","C2589T","C2671T","T2689C","C2714G","A2734G","A2755G","A2829T","A2925G","C2942A","G3044A","C3346T","T3359C","A3435G","C3499T","C3542T","G3643T","A3748G","A4076C","G4148A","A4243T","G4607A","G4727A","T4776A","G4855A","A4951G","A4966G","T4975C","C4993A","A5005G","C5047T","C5050A","A5051G","G5131A","G5137A","A5142C","A5159G","G5170A","G5179A","C5221A","C5248A","C5306A","A5385G","A5411G","T5439C","T5484C","A5548G","T5614-","C5615-","T5616-","A5619G","G5620T","G5629A","G5644A","C5651T","C5659A","A5702G","A5711G","A5784G","T5788C","T5789A","C5792A","C5795A","C5797T","G5802A","A5804T","G5808T","-5812G","-5813T","-5814G","-5815G","-5816A","-5817G","-5818A","-5819G","-5820G","-5821G","-5822G","-5823G","G5839A","-5861A","C5878A","T5956C","A6044G","A6076G","T6166C","A6168C","-6170G","C6172T","C6189T","A6197C","-6201A","T6250G","A6263T","A6324G","A6326G","G6458A","G6466T","A6471C","A6489C","C6673A","C6684T","A6689T","G6790T","A6820T","A6823G","-6833A","-6834A","-6835T","T6838G","A6840C","-6956C","-6957T","-6958T","-6959A","-6961A","-6964C","-6967T","A7002G","A7005G","T7008A","A7033G","A7037G","A7044G","G7092A","A7123G","C7201T","A7275G","A7303G","A7313C","A7315G","C7322T","G7440A","G7441A","G7517T","A7589T","A7590C","G7628A","A7629C","T7631C","G7657A","C7691A","T7692C","A7747T","A7755G","A7763C","C7801T","C7906T","C7969A","A7998G","C8033A","C8080A","A8163G","T8176C","G8181T","A8184G","G8255A","G8276A","C8294A","G8304A","T8310A","A8312G","A8314C","T8321C"],"INT":["A125T","K156N","D278N"],"RT-p51":["T165I","Q207E","E245V","K277R","L283I","A317T"],"RT-p66":["T165I","Q207E","R211K","E245V","K277R","L283I","A317T","N447S","H483Y","E516D"],"gp120":["-3T","P57R","N64D","-106L","-109T","N111Q","N115T","-118S","-119H","-120D","N121S","-122G","T123I","-124G","N132K","I137L","T158R","S161T","D202N","K204N","N206T","K212T","N273K","T277I","T279S","E312D","R322S","N328K","K329T","-368L","-369K","-382G","-383S","-384G","T385N","I395V","N397S","G413E","K474R"],"gp41":["I4L","R46K","V72L","N96S","D109T","M118I","L130T","E151G","K154Q","D232G","S236P","L244I","N287S","S293I","Q294R","V325I","H331N","R334K","I336K","R337G"],"p17":["S126N","Q127P"],"p24":["S120N","T210S","L211P"],"p7":["R11K","K41Q"],"pro":["T12A","G16E","I93L"],"rev":["L21F","T62N","L78I","E111D"],"tat":["N12R","T58A","S87*"],"vif":["L64I","R90K","K122R","Q127R","I130T","N140S","T154I","T155K","K181R","G182D","R184K","N186H"],"vpr":["E13A","T19A","L68M","S94G"],"vpu":["S2L","S3Y","L4I","D5I","I6T","V7-","A8-","V13I","A15V","L18I","K32R","K35R","L61Q","V65A","E66V","-69V","-70E","-71R","-72G","D78N"]},"labels":{"aa":"INT: A125T, K156N, D278N; RT-p51: T165I, Q207E, E245V, K277R, L283I, A317T; RT-p66: T165I, Q207E, R211K, E245V, K277R, L283I, A317T, N447S, H483Y, E516D; gp120: -3T, P57R, N64D, -106L, -109T, N111Q, N115T, -118S, -119H, -120D, N121S, -122G, T123I, -124G, N132K, I137L, T158R, S161T, D202N, K204N, N206T, K212T, N273K, T277I, T279S, E312D, R322S, N328K, K329T, -368L, -369K, -382G, -383S, -384G, T385N, I395V, N397S, G413E, K474R; gp41: I4L, R46K, V72L, N96S, D109T, M118I, L130T, E151G, K154Q, D232G, S236P, L244I, N287S, S293I, Q294R, V325I, H331N, R334K, I336K, R337G; p17: S126N, Q127P; p24: S120N, T210S, L211P; p7: R11K, K41Q; pro: T12A, G16E, I93L; rev: L21F, T62N, L78I, E111D; tat: N12R, T58A, S87*; vif: L64I, R90K, K122R, Q127R, I130T, N140S, T154I, T155K, K181R, G182D, R184K, N186H; vpr: E13A, T19A, L68M, S94G; vpu: S2L, S3Y, L4I, D5I, I6T, V7-, A8-, V13I, A15V, L18I, K32R, K35R, L61Q, V65A, E66V, -69V, -70E, -71R, -72G, D78N"}}},{"name":"JN029801","node_attrs":{"div":0.17174,"accession":"JN029801","clade_membership":{"value":"other"},"country":{"value":"SG"},"date":{"value":2011.0},"Strain_name":{"value":"11SG_HM021"},"LANL_subtype":{"value":"CRF51_01B"}},"branch_attrs":{"mutations":{"nuc":["A416G","C426T","T635C","A797C","A857C","T1003C","C1060A","G1184A","C1229T","G1388A","C1406T","G1543A","T1796C","A1907G","A1993T","A2023G","A2059G","T2071C","T2087C","G2134A","C2281T","C2584T","G2686A","A2698G","A2727G","T2803C","A2980G","A3071G","C3376T","A3387G","A3535G","C3653A","C3688T","T3865G","C3994T","C4078A","A4107C","T4152C","A4225G","G4268A","T4291C","A4385G","G4464A","C4754T","G4767A","G4769A","A4774G","G4864A","A4865C","G4870A","C4925A","C4978A","A4994C","G4995T","G5040A","A5065G","T5072C","G5128A","A5233G","T5292C","G5412T","A5462G","T5467A","T5483C","C5552A","T5576C","-5611T","-5612C","-5613C","A5626G","A5643G","A5704T","G5717A","A5718G","T5787A","G5799T","C5801T","C5806A","T5807G","-5809G","-5810G","-5811G","C5831T","T5836G","G5842A","T5860-","C5862-","A5946G","A6020T","G6024C","A6065T","T6072C","T6169A","-6170T","A6173G","A6191T","-6201T","A6230G","T6287C","A6325G","A6327G","A6425G","G6463A","A6535G","A6706G","A6723T","C6752A","G6809A","A6810G","A6841G","A6855G","C6864T","A6884G","C6885T","A6936G","C6951A","-6961C","-6964G","A6966G","-6967A","-6968T","-6969G","-6970A","-6971A","-6972A","-6973A","-6974T","-6975G","-6976T","-6977G","-6978A","-6979C","-6980G","-6981G","-6982G","-6983G","-6984C","-6985A","-6994T","-6995G","-6996G","-6997G","G7055A","T7059C","T7144G","A7148G","A7158G","G7168T","G7195A","G7212A","G7235A","C7289G","G7291A","T7308C","T7325A","G7339A","A7366G","A7396G","A7456G","T7466C","G7534A","A7604G","G7633T","T7642G","G7668A","G7735A","G7773A","G7790A","A7796T","C8009T","A8011G","C8020T","A8076G","T8215C","A8228G","A8306C","G8945T"],"INT":["L101I","K111T","V126A","V165I","I204V","S230N"],"RT-p51":["K211R","I326V","K431R"],"RT-p66":["I326V","K431R","Q520K"],"gp120":["K31R","I56L","N71Y","V73A","-106A","N107K","Q108F","-109E","N113Y","I116V","N117S","-118G","-119I","-120G","-122I","-124D","I126V","Y145H","D157G","K159Q","N160T","S162E","T191A","Y290F","Q300K","E319R","N327-","Q334R","S337L","T344V","K361R","T366N","-384D","T385I","G401R","V402A","N432D","N435S","E438D","M447I","S453N","V461I","Q479E"],"gp41":["V2A","F8I","T101A","Q110Y","D113E","R122K","D148E","S157N","D163N","T165S","H258R","I309V","I318V"],"nef":["E201D"],"p17":["L34I","Y79F"],"p24":["I91T","T110N"],"p7":["R26K"],"pro":["N37D","E65D"],"rev":["L13I","A54V","I55V","R58W"],"tat":["K29R","C31S","V36A","P59H","V67A"],"vif":["E61K","K63R","G93D","S95N","D113E","Q136P","A137S","A152T","K160R"],"vpr":["E48D","I63T"],"vpu":["I33L","R37K","D60E","E62A","E63A","L67R","-68G","A75V","W77G","V79I"]},"labels":{"aa":"INT: L101I, K111T, V126A, V165I, I204V, S230N; RT-p51: K211R, I326V, K431R; RT-p66: I326V, K431R, Q520K; gp120: K31R, I56L, N71Y, V73A, -106A, N107K, Q108F, -109E, N113Y, I116V, N117S, -118G, -119I, -120G, -122I, -124D, I126V, Y145H, D157G, K159Q, N160T, S162E, T191A, Y290F, Q300K, E319R, N327-, Q334R, S337L, T344V, K361R, T366N, -384D, T385I, G401R, V402A, N432D, N435S, E438D, M447I, S453N, V461I, Q479E; gp41: V2A, F8I, T101A, Q110Y, D113E, R122K, D148E, S157N, D163N, T165S, H258R, I309V, I318V; nef: E201D; p17: L34I, Y79F; p24: I91T, T110N; p7: R26K; pro: N37D, E65D; rev: L13I, A54V, I55V, R58W; tat: K29R, C31S, V36A, P59H, V67A; vif: E61K, K63R, G93D, S95N, D113E, Q136P, A137S, A152T, K160R; vpr: E48D, I63T; vpu: I33L, R37K, D60E, E62A, E63A, L67R, -68G, A75V, W77G, 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E11D, R20K, L28I, V37I, S39C, I84L, A125V, G163E, I234V, G283S; RT-p51: A39S, I135T, T200I, E207Q, K211R, F214L, P272A, A355G, S379G, K385R, T386I, T403I, E432D; RT-p66: A39S, I135T, T200I, E207Q, K211R, F214L, P272A, A355G, S379G, K385R, T386I, T403I, E432D, L517I, S554T; gp120: L57V, E59V, N105D, -106K, -107L, -109S, N111E, -112E, N113I, -123K, -124N, I133V, T135L, E136G, R138K, D139S, K141M, K142Q, K150R, L151S, D159K; gp41: I24V, R46K, S107T, L108Y, D109Q, D113G, R122K, T128S, G129Q, L130E, N133R, E137D, E151A, I182V, L210H, Q229R, G235R, S256I, V267A, S293R, I318V, R334T; nef: I10L, R22K, E28V, A32P, V33A, Q35R, I43L, S45T, A50T, N51K, D54A, F85L, V114I, D149E, P150Q, E155K, N157T, N162T, P176T, M182V, R188K, R196H; p1: H9C; p17: K12E, R30K, L61M, S67A, S126N; p2: N9G, -10T, -13L; p24: I27V, S44A, M96I, T110N, N183G; p6: S3N, P23-, S24P, P25S, Q26L, E29G, Y36C, A39T; p7: R11K, R26K; pro: G17E, L19I, D35E, I36M, K41R, L63S, I93L; rev: E11T, L21R, A47E, H53Q, I55F, S61N, Q74H, I102V, S112T; tat: V4I, K12E, N23T, K24N, K40R, R57N, K63E, S75T; vif: R47T, V51I, D62G, K63R, V65I, D101N, K122N, A123T, I128R, K141Q; vpr: A59V, Q77R, T84N, R85I, Q86R, S94N; vpu: I18V, D44K, R47S, E58D, L74H, 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K7Q, T124A, A125T, I135V, V165I, A205S, T206S, T218I, D256E; RT-p51: D123E, I135V, S162C, E169D, K173A, Q174K, Q245V, K277R, T286A, E291D, E297T, V317A, S322A, T386P, Q394L, E399D, K431T, V435A; RT-p66: D123E, I135V, S162C, E169D, K173A, Q174K, Q245V, K277R, T286A, E291D, E297T, V317A, S322A, T386P, Q394L, E399D, K431T, V435A, A446S, L452K, K527N, S554A; gp120: S1N, E59Q, N64D, E78T, -107N, -109N, -112S, -114S, -115S, -116S, -118E, -119K, I126M, E136N, K141V, K142T, V154I, N158S, F182W, E240G, E241D, I243V, E247Q, L249I, T250S, Q259H, E262Q, I281M, Q287K, I305L, G307R, K309Q, A318V, T344V, K361Q, -368T, -369N, -371T, M398L, N414L, N432Q, -433N, R448K, I468V, R476Q, Q479G, E481Q; gp41: Q32L, L81R, S88T, T94P, N96S, S101T, E110Q, I124V, Q147K, E148D, N160S, F188C, L191I, Q199K, E220G, R233T, R236C, C253F, A268T, I301V, A306T, A310V, E313Q, V321A, T325I, H331N; nef: I10M, V11G, E24P, A26T, G29R, K39R, H40R, N51T, A53P, L58V, Y81S, K82R, G83A, F85R, Y102H, D151Q, E174D, R178K, Y203F; p17: E17K, S54A, G62E, Q69K, Y79F, K91H, D121A; p2: N9H, -10A; p24: I124V; p6: I21R, P25Q; p7: R3K, I12N; pro: K20R, I72T; rev: G6R, P31S, Q51H, H53R, S54L, I55L, I59L, S61D, S86D, A108P; tat: K7R, K19R, R52Q, K63Q, T64I, K85E; vif: R19N, N22K, H27Y, Y30H, V31I, G37R, Y39R, Y44F, G60E, D61T, K63T, I66V, K67T, R92G, K122Q, H127R, I128L, S130N, E134N, T155K, K176E, Q178R; vpr: Q3R, E48N, F72Y; vpu: V5Q, L7A, A11G, M67R"}},"children":[{"name":"GU595149","node_attrs":{"div":0.23809,"accession":"GU595149","clade_membership":{"value":"other"},"country":{"value":"IT"},"date":{"value":2001.0},"Strain_name":{"value":"53143"},"LANL_subtype":{"value":"CRF75_BF1"}},"branch_attrs":{"mutations":{"nuc":["G257C","G259C","A265C","G270A","G272A","G275C","G277A","G282C","G285C","T288C","G298C","-304A","-305A","G367A","G379A","A417C","C483G","A488G","A562C","C626G","C641G","C713T","A735G","C875T","C897T","A1046G","A1089G","G1090A","A1124G","C1171T","T1172G","G1173A","T1174C","C1175T","T1181C","A1196G","G1199A","G1206A","T1212C","T1234C","C1235T","T1237A","A1259G","A1271G","G1272T","G1404A","G1443A","A1670G","A1709G","C1754G","A1768C","G1848A","G1912A","A2293G","A2311G","A2386T","C2671T","A2722T","A2755G","C2797T","G2821C","G2887A","A2914G","G2969A","A2980G","A3070G","A3100G","A3409G","A3478G","G3523A","G3544A","T3567C","T3613C","G3631A","A3744G","G3796A","A3805G","A3808C","G3836T","G3869A","A4016G","C4162T","A4222G","T4355A","A4356C","C4471A","G4549A","T4679C","G4727A","A4735G","A4737G","G4774C","G4887A","A5059G","T5062C","G5075A","A5093C","T5102C","A5187G","C5280T","A5463C","C5548G","T5562C","A5623G","C5651T","C5763T","A5907G","A6009G","A6050G","A6179G","A6186C","C6189A","A6198G","-6200A","-6201G","-6202C","-6203G","-6204G","-6205G","-6206G","-6207A","-6208A","-6209A","-6210A","-6211G","A6222C","A6235G","C6238T","A6304G","A6329G","A6335T","A6402G","T6436G","A6463T","A6464G","A6475G","A6535T","A6693C","A6723T","G6725A","G6743A","T6793C","A6797G","G6803A","A6811G","C6826A","-6835A","-6836G","-6838T","T6932G","-6958G","-6977G","-6978A","-6979A","-6980C","-6981A","-6982G","-6983A","-6984C","-6985A","-6986A","-6987A","-6988T","-6989A","-6990G","-6992A","-6993C","-6994T","-6995A","-6996T","-6997A","-6998G","-6999G","-7000A","-7002A","G7026A","G7065A","T7087C","A7101G","A7154G","A7158C","C7164A","G7519A","A7549G","C7630A","G7640A","C7658G","A7714G","G7753A","A7782C","C7801T","A7818G","C7843T","A8006G","A8184T","A8236G","G8280T","A8305G","A8323G","G8388A","A8409T","G8454A","A8469G","C8565T","A8584C","A8587G","C8607T","G8654A","T8740C","A8801G","C8869T","A8870G","A8886G","G8888A","A8954G","C8989T","C9003T"],"INT":["E11D","S17N","A21S","V32I","S81G","Y194T","D232E"],"RT-p51":["V292I"],"RT-p66":["V292I","L491S","K550R"],"gp120":["K18R","N52S","N66D","-106V","N109D","-117G","-121M","-122E","-123A","-124G","E183G","T204E","H280P","Y290F","A291T","D294S","D297N","T308A","N312K","K315E","V317I","H324Q","-326K","N327D","S360A","S370G","-372E","S373Q","-378N","-379S","-380T","-381I","-382G","-383N","R391K","K416R","N435D","T437K"],"gp41":["D109E","D113N","S160T","K172R","Q294L","G326V"],"nef":["V16I","Q35P","E38K","I43V","P75S","H89Y","R105K","I133T","P176L","M182V","H192Q"],"p17":["G11E","R15K","K28Q","L50V","K76T","D102E"],"p2":["A7T"],"p24":["I2V","S120D","P147L","V148T","E159K","F161L","F168S","F169Y","V181L","G225S"],"p6":["Q30P"],"pro":["L10F","G17E"],"rev":["V16A","L18F"],"tat":["R29S","P58A","P77L"],"vif":["K50R","D101N","K158R","I159T"],"vpr":["N28S","A59V"],"vpu":["I6V","A15V"]},"labels":{"aa":"INT: E11D, S17N, A21S, V32I, S81G, Y194T, D232E; RT-p51: V292I; RT-p66: V292I, L491S, K550R; gp120: K18R, N52S, N66D, -106V, N109D, -117G, -121M, -122E, -123A, -124G, E183G, T204E, H280P, Y290F, A291T, D294S, D297N, T308A, N312K, K315E, V317I, H324Q, -326K, N327D, S360A, S370G, -372E, S373Q, -378N, -379S, -380T, -381I, -382G, -383N, R391K, K416R, N435D, T437K; gp41: D109E, D113N, S160T, K172R, Q294L, G326V; nef: V16I, Q35P, E38K, I43V, P75S, H89Y, R105K, I133T, P176L, M182V, H192Q; p17: G11E, R15K, K28Q, L50V, K76T, D102E; p2: A7T; p24: I2V, S120D, P147L, V148T, E159K, F161L, F168S, F169Y, V181L, G225S; p6: Q30P; pro: L10F, G17E; rev: V16A, L18F; tat: R29S, P58A, P77L; vif: K50R, D101N, K158R, I159T; vpr: N28S, A59V; vpu: I6V, A15V"}}},{"name":"MK341078","node_attrs":{"div":0.25315,"accession":"MK341078","clade_membership":{"value":"other"},"country":{"value":"ES"},"date":{"value":2017.0},"Strain_name":{"value":"P4837"},"LANL_subtype":{"value":"CRF75_BF1"}},"branch_attrs":{"mutations":{"nuc":["G278A","A302T","A303-","T426C","A435T","G481C","A485G","A500G","T516C","G524A","T534G","A566G","A581T","C583T","A645G","G656A","A672C","G709A","T718C","T978G","C1013T","C1061T","C1091T","A1115C","T1182C","G1184A","C1220T","A1242G","C1243T","G1256A","G1277A","G1328A","G1354C","A1367G","T1457A","C1481T","G1495A","T1547C","A1565G","A1673G","C1721T","C1746T","C1782A","C1787T","T1790C","T1826G","C1828A","G1845A","G1917A","C1985G","T2087C","G2422A","T2443C","C2452T","A2557G","A2629G","A2693G","A2715C","C2749T","G2926A","T2935C","C2942A","C2968T","C2975A","C3002T","G3059A","A3218G","A3264G","C3266T","T3368C","A3370G","A3391G","G3442T","A3484G","C3492T","T3493G","T3497C","C3499T","T3505G","G3529A","T3541C","G3595A","C3649T","A3684G","A3787G","A3816G","A3825C","G3834A","A3868G","A3973C","G3989A","A4012G","A4066T","C4123T","G4177A","G4183A","C4471T","A4555G","G4573A","G4673A","C4674A","G4703A","C4757T","C4761T","T4940A","T4968C","C5052A","G5060A","A5061G","C5125T","G5143A","C5213A","T5357C","G5363A","T5391C","A5447C","G5448A","A5461C","G5462A","G5538A","G5557A","T5567G","C5581G","T5614C","A5622T","C5654G","G5673A","A5718G","G5783A","A5790G","C5792A","A5793T","T5857A","C5862A","A5866C","A5869G","C5878A","T5899G","C5917T","T5956C","A6025C","T6026A","A6030C","G6079A","A6158C","G6170A","T6171A","A6172G","G6175T","A6180C","A6182G","A6186G","T6187G","A6188G","C6190T","A6192G","T6193C","G6217A","G6218A","G6224C","G6225A","A6226G","A6261G","A6303T","C6305A","T6306G","T6310C","G6311A","T6315C","C6317A","C6318A","A6326G","A6333G","C6336G","T6337C","A6403T","T6438A","G6458A","A6465C","G6466C","C6477T","G6532A","A6538C","G6611A","G6634A","G6647A","A6648C","A6691C","A6713G","A6714C","T6724C","A6734G","T6735A","C6752A","A6765C","G6776A","A6790C","T6794C","G6809A","-6830G","-6831G","-6832G","-6835T","A6837-","C6919T","A6931T","C6957T","-6958C","G6962A","C6966T","-6968T","-6969G","-6970G","-6971A","-6972G","-6973C","-6974A","-6975A","-6976T","C6991-","A7001-","T7003-","C7014T","C7018T","A7032G","T7095C","A7096T","G7132A","A7148C","T7150G","A7152G","T7159C","A7160G","G7190A","A7241C","G7286A","G7288A","A7312G","A7318C","A7372G","A7373C","A7375G","G7390A","T7444C","G7451A","C7452T","G7459A","C7469A","C7489T","A7507G","G7552A","T7555C","A7572G","T7622A","C7623A","T7624C","G7628A","A7629G","C7645T","G7657A","G7689A","T7691A","T7692C","G7717A","A7734G","A7756G","A7763C","A7782G","T7867C","A7874G","T7939A","C7988A","A7990C","G7997A","C7999T","C8005A","T8016C","T8035C","T8155C","T8164C","T8206C","G8208A","A8258T","A8276C","A8288G","T8290C","G8328T","G8329A","T8348A","A8354G","G8365A","T8371A","T8375G","T8411C","G8418A","G8427A","C8450T","A8455C","A8459C","G8462A","A8519G","C8523G","A8533G","G8534A","G8561A","T8583A","A8586C","A8623T","A8636T","A8656G","G8678C","G8682A","T8687C","T8759G","G8784C","G8798A","A8829T","G8834A","G8846A","A8876T","G8882A","A8901C","G8902C","G8918C","G8970A"],"INT":["K14R","S17T","R20K","V72I"],"RT-p51":["I178M","T200A","L283I","P294T","A322T","I375V","K390R"],"RT-p66":["I178M","T200A","L283I","P294T","A322T","I375V","K390R","E449D","A466V","S468P","K530R"],"gp120":["N1K","T3N","E4D","L57F","L58M","Q59P","N102H","N107K","N111A","S112R","N113A","S116N","-117I","E118K","K119E","-120Q","N136S","K150I","L151S","V153I","I154T","P155K","S158G","D159N","N160S","E183D","F195Y","D202N","T208M","A253T","E265T","K287A","D294E","Q300K","N304T","E319K","-326G","T368I","T371I","-372W","T374N","T387I","K393R","K404R","L414P","N433S","T436E","D446N","I463L","V478I"],"gp41":["I24L","A50M","Q56K","K90R","S107N","D109S","M118I","E119Q","G129D","L130T","K144R","K154Q","I191V","Q229N","D232N","G235S","V238A","S302N","I319L","I325L","I329V","R342I"],"nef":["S8N","E38A","R39S","Q61E","E64G","S81N","R82Q","K94M","E98D","V114I","F139L","V148L","S163C","M168I","K178N","S187P"],"p17":["I34L","G49A","S67A","A83V","I104V","K113Q","A121G","S125N","V128A"],"p24":["L83V","E128D","T171V","G208A"],"p6":["P23S","Q25H","L35M","S50*"],"p7":["R10K"],"pro":["L10V","G16E","G40E","L63V"],"rev":["S8N","E11D","L18V","S31T","A47E","R50K","H51Y","R53K","Y63H","S106P"],"tat":["K24T","R29Q","D61N","I64S","L69V","P77H"],"vif":["M29I","H30N","V51I","T63S","P156T","I159V","T180I","S186N"],"vpr":["P37T","S96P"],"vpu":["S3P","Q5H","A16G","G59E","S62Y"]},"labels":{"aa":"INT: K14R, S17T, R20K, V72I; RT-p51: I178M, T200A, L283I, P294T, A322T, I375V, K390R; RT-p66: I178M, T200A, L283I, P294T, A322T, I375V, K390R, E449D, A466V, S468P, K530R; gp120: N1K, T3N, E4D, L57F, L58M, Q59P, N102H, N107K, N111A, S112R, N113A, S116N, -117I, E118K, K119E, -120Q, N136S, K150I, L151S, V153I, I154T, P155K, S158G, D159N, N160S, E183D, F195Y, D202N, T208M, A253T, E265T, K287A, D294E, Q300K, N304T, E319K, -326G, T368I, T371I, -372W, T374N, T387I, K393R, K404R, L414P, N433S, T436E, D446N, I463L, V478I; gp41: I24L, A50M, Q56K, K90R, S107N, D109S, M118I, E119Q, G129D, L130T, K144R, K154Q, I191V, Q229N, D232N, G235S, V238A, S302N, I319L, I325L, I329V, R342I; nef: S8N, E38A, R39S, Q61E, E64G, S81N, R82Q, K94M, E98D, V114I, F139L, V148L, S163C, M168I, K178N, S187P; p17: I34L, G49A, S67A, A83V, I104V, K113Q, A121G, S125N, V128A; p24: L83V, E128D, T171V, G208A; p6: P23S, Q25H, L35M, S50*; p7: R10K; pro: L10V, G16E, G40E, L63V; rev: S8N, E11D, L18V, S31T, A47E, R50K, H51Y, R53K, Y63H, S106P; tat: K24T, R29Q, D61N, I64S, L69V, P77H; vif: M29I, H30N, V51I, T63S, P156T, I159V, T180I, S186N; vpr: P37T, S96P; vpu: S3P, Q5H, A16G, G59E, 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S106P, P107C, A108T; tat: L8I, H13Q, K24Q, V36I, R57T, Q60Y, T64N; vif: F39Y, K63E, K67T, K91L, S95R, I128R, T155A, I159T, L163V, R167K, T170V, K181R; vpr: L22I, N28R, G41N, Y45H, E48N, Q77H, A89G; vpu: Q2V, E5A, A8G, A16L, I18L, V21I, F27Y, L34V, R37K, K38R, D40N, R41W, V65A, M67L, -71L, A75I, P76L, W77G, 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L83M, H87Q, M96I, A116T, K170R, T171V, D187E, K199R, P207S; p6: S3N, E19-, I21K, T22I, P23T, S24P, P25S, Q26L, K27R, T30M, K33Q, S36G, N47S; p7: V13I, I24L, T50S; pro: I10V, L63C, I64M; rev: D9E, E10Q, T15P, H53R, S54E, E57Q, I59V, T62S, A68T, K91Q, G96E, S103P, C107D, E111G, T114D; tat: I36L, K40Q, S46C, K50E, R56T, S61A, Q66K, L69I, S75P, P77A; vif: Y39R, E45D, R47N, D78E, R93K, D101G, I124L, N140T, K141Q, K167Q, N190S, H192Q; vpr: L20I, N41D, T49N, I84L, R90G; vpu: S3P, A5T, I6-, V10I, V14A, V26A, I28L, I33V, K35R, I43F, A61T, E66A, L71T, D80N"}}},{"name":"AJ249239","node_attrs":{"div":0.2466,"accession":"AJ249239","clade_membership":{"value":"other"},"country":{"value":"CM"},"date":{"value":1996.0},"Strain_name":{"value":"96CM_MP535"},"LANL_subtype":{"value":"K"}},"branch_attrs":{"mutations":{"nuc":["A389G","G424A","A428G","T473C","G520C","C525A","A530G","C537A","C558A","G579A","A585G","C586T","G595T","G607A","A673G","G683A","A806G","A815G","T852A","T885C","G956T","T1040C","T1055C","A1101G","A1112G","T1148C","T1244C","A1277G","A1359T","A1370G","G1404A","G1419A","T1452C","C1456T","G1474A","A1493T","G1498A","A1532G","G1769C","A1786C","G1835A","A2057C","A2063C","G2173A","A2254G","C2263T","G2392A","G2509A","A2519G","G2548A","G2580A","A2613T","G2656A","A2688C","A2932G","C2978T","A3019G","A3031G","G3088A","C3095A","C3097T","G3099A","T3131C","G3169A","A3193G","A3230G","C3352T","A3403G","T3418C","A3434C","C3449A","A3456G","A3490G","A3524G","C3542T","A3543G","A3622G","A3643T","G3686A","C3823T","T3829C","G3866A","A3874C","T3898C","T4018C","G4060A","G4131C","T4144C","G4145A","A4150G","A4178G","A4195G","T4291C","G4294A","A4376G","A4427T","C4428T","A4432C","T4441A","T4537C","T4674C","G4677A","A4695C","A4775G","A4804T","C4883A","T4943A","A4944G","A4952G","A4990G","A5036C","A5046G","A5056G","A5059G","A5061C","T5147A","A5173G","G5225A","C5227T","T5228C","A5247C","G5273C","T5333C","G5359C","A5372G","G5382T","T5412C","A5461C","A5462G","T5515A","A5537C","G5538C","G5557A","A5563G","T5568C","C5585G","A5613G","T5616C","-5625T","T5627-","A5628-","G5629T","C5659T","G5673A","A5704T","T5736A","A5784G","C5792A","A5793G","C5795A","C5797T","T5799G","G5802A","A5805C","G5808T","-5815G","-5816A","-5817A","-5818C","-5819T","-5820G","-5821G","-5822G","-5823G","G5839A","G5858A","C5859A","C5869A","A5918C","A5956G","C5958A","A5959G","A5983C","T6026A","T6046C","A6124T","A6131G","A6167G","-6170T","T6171A","-6172C","G6175A","A6176G","A6177G","C6178A","A6180C","T6181C","C6183A","A6186G","T6187C","A6197G","T6199A","-6200A","-6201C","-6202T","-6203A","-6204G","-6205C","-6206A","-6207C","-6208T","-6209G","-6210T","-6211G","G6214A","-6216G","-6217C","A6221C","-6226A","G6280A","A6283G","A6303G","G6314C","A6320C","A6322T","T6328C","A6330G","C6333G","-6338G","G6339A","T6343C","G6380A","G6391A","T6395A","T6457G","A6465G","A6475G","G6481A","G6647C","-6697G","G6725A","T6763C","T6787C","A6789T","A6790G","A6798G","C6800A","A6801G","A6814G","T6815C","G6819A","C6826T","-6833A","-6834A","-6835G","-6838T","A6839G","A6840G","T6849C","T6863C","G6871A","A6884C","C6885T","T6895G","G6906C","T6925C","T6949G","-6953G","-6955G","-6956G","-6957A","-6958G","-6959A","-6960A","-6961T","-6962G","-6963G","-6964T","-6965A","-6966C","-6967T","C6991-","A7007-","C7008-","A7033G","C7064A","C7087T","A7095G","C7096T","A7108C","A7155C","A7157C","-7162T","A7219G","A7273C","A7313T","C7328T","G7333A","A7428G","G7508A","C7625T","T7630A","G7640A","C7658G","A7685T","G7689A","G7717A","T7722C","C7747T","T7796A","C7801A","G7835A","T7863C","C7921T","C7940T","C7949G","C7951A","G7957A","G7997A","C8005A","A8023C","C8080A","G8087A","C8103T","T8113C","A8168G","A8241G","T8268G","C8320T","T8321C","G8388A","A8409G","T8414A","T8426C","G8427A","A8455C","A8458G","G8487T","-8491A","G8590C","G8666A","C8699T","A8762G","G8794C","G8808A","T8813A","A8823G","T8843C","G8880A","G8945C"],"RT-p51":["I142V","C162H","R173I","H198P","H334N","G335D","S379G"],"RT-p66":["I142V","C162H","R173I","H198P","H334N","G335D","S379G","N447H","Q452K","K454R","T477A","H483C","E516D","V531I","S554A"],"gp120":["A2N","N5K","T22P","T35K","L58M","K93E","N105D","-106Y","-109A","N111S","N113V","-114V","T115S","-116P","-117A","K150R","V154L","I156L","A176T","S181T","N201K","K204R","E265Q","I281M","A291T","K312M","N315S","Q316R","G322K","-326K","N328G","K329-","I332T","S336P","S337N","T344L","G351A","-365E","-367G","-368E","-369N","-370G","-371T","T385-","N414S","N435T","T436H"],"gp41":["I4L","L9F","N42S","V69I","L108W","D109E","D113N","D125G","T128S","I140T","S165T","N166K","V178I","V187A","P216A","D232N","H259Q","D262N","A267V","I289V","E313G","V322G"],"nef":["V16I","T23A","P24R","G29R","D38A","K39R","A49S","G83A","R151A","A156T","N161D","V180I","E201D"],"p17":["R30K","R62T","L64I","L68I","L75I","V82I","T84V","K113R"],"p2":["S10P","A11V"],"p24":["S41T","E75D","I124V","T210S","G225S","V230I"],"p6":["Q26R","K27-"],"p7":["R3K","Q9H","R11K"],"pro":["V13I","M89L"],"rev":["S8P","I18T","Q24E","K30N","P31L","T34S","A37T","R50K","H53S","I59L","T62A","L78I","R80K","S82N","S89P"],"tat":["E2D","K29R","Y47N","Q54P","S61N","K63E","P70R","D80E","P81Q","G83D"],"vif":["Y30H","V31I","H73L","D99E","I120V","Y135C","I154V","K157R","K158R","T159P","H187Q"],"vpr":["Y15N","N48T","V57L","R85P","A93S"],"vpu":["V7S","G8-","I33L","E66D","L67I","D78N"]},"labels":{"aa":"RT-p51: I142V, C162H, R173I, H198P, H334N, G335D, S379G; RT-p66: I142V, C162H, R173I, H198P, H334N, G335D, S379G, N447H, Q452K, K454R, T477A, H483C, E516D, V531I, S554A; gp120: A2N, N5K, T22P, T35K, L58M, K93E, N105D, -106Y, -109A, N111S, N113V, -114V, T115S, -116P, -117A, K150R, V154L, I156L, A176T, S181T, N201K, K204R, E265Q, I281M, A291T, K312M, N315S, Q316R, G322K, -326K, N328G, K329-, I332T, S336P, S337N, T344L, G351A, -365E, -367G, -368E, -369N, -370G, -371T, T385-, N414S, N435T, T436H; gp41: I4L, L9F, N42S, V69I, L108W, D109E, D113N, D125G, T128S, I140T, S165T, N166K, V178I, V187A, P216A, D232N, H259Q, D262N, A267V, I289V, E313G, V322G; nef: V16I, T23A, P24R, G29R, D38A, K39R, A49S, G83A, R151A, A156T, N161D, V180I, E201D; p17: R30K, R62T, L64I, L68I, L75I, V82I, T84V, K113R; p2: S10P, A11V; p24: S41T, E75D, I124V, T210S, G225S, V230I; p6: Q26R, K27-; p7: R3K, Q9H, R11K; pro: V13I, M89L; rev: S8P, I18T, Q24E, K30N, P31L, T34S, A37T, R50K, H53S, I59L, T62A, L78I, R80K, S82N, S89P; tat: E2D, K29R, Y47N, Q54P, S61N, K63E, P70R, D80E, P81Q, G83D; vif: Y30H, V31I, H73L, D99E, I120V, Y135C, I154V, K157R, K158R, T159P, H187Q; vpr: Y15N, N48T, V57L, R85P, A93S; vpu: V7S, G8-, I33L, E66D, L67I, 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K277R, T286A; RT-p66: K277R, T286A; gp120: N111-, I242V, G307R, G322R, K416R, T436-, I468V; gp41: D125N, E151A, V235I, G314W, I318V, V321I, V322G, H331N; nef: E28A, E98D, S169C; p17: R58Q, L61M, G62E, S67A, Q69K, E107I, K113Q; p2: T8Q, -13I; p24: L6A, T54M, T58I, K203R; p6: L1P, Q26-; p7: R10K, V13-, I24L; pro: H69K; tat: 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E38A, V43I, A53P, A56S, E64D, F85L, M173I, D174E, E176P, Q198E; p1: N9S; p17: A15S, R20Q, K26S, K28R, G49C, M61I, L64I, A67V, Y79F, I104L, K109E, N124D, S126N; p2: N9G, -12S; p24: A14P, V59I, I91V, T110N, T210S; p6: L15W, M17I, G18R, I21M; p7: Q9K; pro: K69Q; rev: E11D, R43K, R66G, H82R, T94V, V104G, S112P; tat: A21P, Q35P, L39V, T40A, T58P, P59S; vif: R19K, S52C, T68A, L109M, E117D, P131T, Q136P, T155A, T157A, R159T, K160R; vpr: A4T, I61T, Q86G; vpu: P3-, L4I, Q5L, V6A, V7I, A8G, I28L, L33W, R34K, F43Y, D44N, R47I, E66A, H73P"}}},{"name":"KX389622","node_attrs":{"div":0.28815999999999997,"accession":"KX389622","clade_membership":{"value":"other"},"country":{"value":"NG"},"date":{"value":2009.0},"Strain_name":{"value":"09NG010499"},"LANL_subtype":{"value":"A7"}},"branch_attrs":{"mutations":{"nuc":["A369C","G378A","C379A","G386A","A418C","A423C","A425G","G428A","C435A","G452A","C471G","T473C","C476T","C496G","A516C","A530G","C537A","A562G","T572C","A605C","A644G","A654C","A663C","A669C","A673G","A674G","A692C","A706G","C713T","C731T","T774A","T782C","G791A","C827T","G977A","T992A","T1001G","A1017C","G1022A","A1089G","C1137T","T1182C","C1211T","G1268A","C1330A","C1331T","T1334C","A1352G","T1385C","G1388A","-1455C","-1456A","-1457A","A1458-","C1460-","A1461G","G1474A","T1481C","G1486A","A1495G","A1499C","T1502C","T1559C","A1588G","G1589A","A1592G","A1607G","G1720T","C1721A","C1722-","G1724-","G1725-","G1726-","G1727-","A1728-","T1729-","G1730-","A1743G","T1749C","C1761T","A1762C","C1825A","A1826G","C1831T","A1857G","A1915G","A1926G","C1985A","T1986C","C2044T","G2134A","A2212T","G2215A","T2257C","A2260T","G2273A","A2311G","T2353C","A2416G","A2455G","G2456C","A2519G","G2524A","C2613A","A2615G","C2635A","C2740T","A2767G","A2830G","A2881G","C2909G","T2968G","A2974T","G3010A","A3031G","A3071G","T3121C","A3142G","A3196G","G3211A","A3217G","A3238G","A3247C","A3249G","A3265G","A3280G","C3322A","T3349C","C3359T","A3370G","G3398T","G3427A","T3469C","C3504A","T3535A","T3566C","A3578G","A3622G","T3644C","A3646G","G3679A","A3715G","C3751T","G3766A","G3772A","A3781G","T3793C","A3808G","G3816A","C3857T","G3866A","A3877G","T3967C","A3979G","A3982G","A4084G","G4092C","G4276A","T4288C","A4391T","C4396A","A4397T","A4498G","A4525G","G4573A","T4667C","G4677A","C4679A","A4684G","T4702C","C4761G","A4768T","A4773C","G4774A","A4775C","T4776C","A4784G","G4786A","G4816A","A4819C","C4820T","T4827C","T4858A","A4862T","A4863G","T4917C","C4937A","T5018C","C5053T","A5055C","A5059G","A5065C","A5069G","G5075A","G5086A","A5094G","T5147C","C5168T","G5176A","C5213G","C5214T","G5276C","A5285G","G5359C","G5362A","C5392T","C5393A","G5403T","T5412C","C5437G","T5472C","G5482A","T5483A","T5484G","C5491T","T5515C","C5554T","A5557G","T5562C","A5581T","A5587G","G5599T","T5602G","A5603-","-5611T","-5612A","-5613C","-5614G","T5620C","A5626G","G5647A","A5659C","G5671A","T5672C","G5673T","A5701C","T5704C","A5707G","G5708T","A5709G","C5727T","C5763T","A5788G","C5792A","A5793G","C5795A","A5796G","C5797T","T5799G","T5801C","G5802A","A5806C","G5808T","-5815G","-5816A","-5817G","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","G5842A","T5857A","-5866C","T5899G","G5902A","C5924T","T5951C","G5954C","T5964C","C5989T","A6008G","T6026C","G6044A","T6046G","C6067G","G6076T","A6088G","C6101A","T6148C","-6164A","-6165G","-6169G","-6170G","-6171T","-6172C","A6174C","-6175A","G6179A","C6183A","A6186G","A6192C","A6194C","-6196C","C6198A","T6199C","-6201C","-6203G","-6205C","-6206C","-6207C","C6209A","T6210A","-6211C","T6213A","A6214C","C6216A","T6217C","-6218A","G6225A","C6241T","T6242A","T6244C","T6246A","A6253G","A6263G","G6267T","T6287C","A6304G","A6305C","G6311A","T6322A","G6323A","A6324C","T6325A","A6329G","T6331A","T6334C","A6336C","T6337G","C6340T","T6385C","T6395A","C6396A","C6397T","C6412A","G6451A","T6457G","G6466T","C6482A","A6489G","A6535C","A6568G","A6571G","G6573A","G6575A","A6577C","T6582G","A6583G","A6589C","T6599C","C6607T","C6618T","T6634A","C6641T","A6648C","C6661T","A6669G","A6683G","-6693G","A6728G","T6745C","-6778T","A6810G","A6811C","C6812G","G6819A","G6821A","A6822G","C6826T","A6837C","A6848G","A6854C","T6856A","A6859T","A6877G","C6938T","C6951A","T6957C","-6958A","C6964G","C6966A","-6971A","-6972C","-6973A","-6974A","-6975A","-6976T","-6981G","-6984T","A6986G","A6987G","-6994G","A7000T","A7036G","A7044G","T7045A","C7088A","A7093G","C7114T","C7124A","C7127A","A7133G","C7134T","T7150G","T7159A","-7162C","-7164A","-7165G","T7217C","T7222C","G7225A","C7250T","A7269G","G7276A","A7345G","G7459A","T7516G","T7597C","C7625T","A7627T","A7633C","G7640A","C7658G","A7673G","C7678T","G7688A","A7690C","A7700T","A7701C","A7705G","T7783C","A7799C","A7818G","A7840G","A7846G","A7880G","T7894C","T7913C","A7921G","G7995A","A8011C","C8047T","C8112T","T8138A","C8168G","T8169C","A8180G","G8216A","G8268C","A8275C","T8287C","C8291A","T8332A","G8349A","G8350A","A8364G","G8373A","T8374A","A8405G","T8444C","A8446G","T8456G","G8490T","C8499G","G8516A","A8525T","A8531T","C8552T","T8582C","A8584T","A8591G","A8597C","C8607T","A8608T","C8651T","C8676T","C8699A","T8740C","A8746T","C8747T","C8775T","G8784A","A8786G","A8794G","G8807A","C8831T","G8834A","T8835C","G8862-","A8863-","G8864-","G8868A","A8874G","T8883C","A8885G","G8888A","A8893G","G8894A","G8936A","A8950T","G8971-","T8972-","C8978A","C9023A","T9028C","T9029A","A9042G"],"INT":["R14K","V31I","G106A","N134D","T206S","D207E","I208L"],"RT-p51":["K39N","V60I","D121H","I142V","K174E","P272A","D291E","I326V","K385R","V435L"],"RT-p66":["K39N","V60I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R14K, V31I, G106A, N134D, T206S, D207E, I208L; RT-p51: K39N, V60I, D121H, I142V, K174E, P272A, D291E, I326V, K385R, V435L; RT-p66: K39N, V60I, D121H, I142V, K174E, P272A, I326V, K385R, V435L, T470N, H480Q, S491P, I495V, R512K; gp120: S1R, E4D, Y33H, D34H, V37A, N52D, P57N, D64K, N71K, E74D, L83I, N105K, -106V, -107T, -109N, -110N, -111N, -112T, -113I, -114E, -115K, -116E, -117M, -118R, E125-, M126-, K127-, S130T, F131Y, V133M, I137V, R138I, I151L, S157T, N159E, N161T, S162N, S181N, N201K, E204N, P210T, K212R, G240E, E241N, V242I, I243R, R245S, T255I, Q265P, N272S, K277E, H280R, T292A, K309E, E319G, Q320E, R322K, E323R, -327N, -328T, K329T, I332V, N334Q, Q335N, N361D, T366N, -368T, T371N, -372W, -376G, -377I, -378G, -379S, -381E, -382T, N397R, L424I, L425I, T427V, N432K, N435T, E436D, T437K, K472R; gp41: N96T, Q108Y, E110D, D113N, Q119E, I124V, Q129N, N166H, K172R, I193V, R231K, T270I, R276H, W279R, L289A, S293G, D305N, G322A, R324S, L330I; nef: G3N, S8G, V11K, Q35R, A50S, Q61H, E63D, Y81F, H89F, I133T, Y135F, V148M, K151R, D175T, E176-, R178G, K184R, R194I, Y203F; p17: K12Q, A15K, K28T, K30Q, L34I, L46V, A54G, M61L, L68I, K76R, Q90H, I107L, K110Q, K112Q, Q113R, N124S; p2: -12Q, I13V; p24: L15I, H87Q, M96L, S120G, T200N; p6: S14I, L15G, G16-, M17-, G18-, E19-, I21E, S23A, S24P, P25S, -26P, Q28S, P49Q, S51L; p7: R3K, R7K, K10R, T11N, K41R; pro: I10V, K20R, K43R, L63T; rev: V16A, I55L, P67S, V97E, S107C, E111G; tat: P6Y, E9D, V36K, Y47H, H60Y, N61D, I69L, K71E; vif: V31I, K33R, F39S, L59V, D61V, R63H, R67K, R77K, D78A, L91Q, K92N, R93G, Y111H, P156L, T157P, K158R, K160T, R167K, T170A; vpr: Y15H, N28Q, P37V, E58Q, I61V, R85P, S96L; vpu: -2Y, P3A, V14I, I18L, V22T, K32Q, R34V, T61A, 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T12R, L19I, D35E, N37D, K69H, V82I; rev: S8A, E10A, F73L, K115E, E116K; tat: N7S, K19T, A21P, N23S, Y32W, K40Q, K53R, Q54R, T58A, P59S, P68L, L74I, S75P, P81S, P84Q; vif: V31I, F39Y, V66I, R77K, D99E, S116A, E117D, H127E, S130R, N140T, K141Q, T155K, T157K, R159I, R167K; vpr: N28Q, H40Q, H45Y, Q86R, N91D, S94G; vpu: I13V, A15V, I25L, F27G, L33V, R34L, M67V, 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G4R, V32I, W108*; RT-p51: T35E, G45R, G51R, W88*, G112K, G190R, W212*, G213R, M230I, K311R, I326V, I377V, W383*, G384E, W398*, M403I, I435M; RT-p66: T35E, G45R, G51R, W88*, G112K, G190R, W212*, G213R, M230I, K311R, I326V, I377V, W383*, G384E, W398*, M403I, I435M, E449K, G462R, E516D, E529K, W535*, G541K, G555R; gp120: A20S, K35A, E59D, N102E, T104N, -107N, -109T, -115S, -116S, -117N, -118S, -119N, -120I, -121A, -122K, -123K, K143Q, Y145H, N159D, N161K, K164I, N167S, A191T, T216S, Q265S, S272G, N273I, N274K, T275Q, R276K, S278I, Y290H, A291T, G296-, D297-, I298-, N304T, S306N, R307G, T313A, I332V, K335T, S336P, G351R, S365N, -368F, T374S, S377H, -379T, N381K, D384G, T387I, K412Q, R416S, -433S, N434T, E438-, T439-; gp41: D113N, E143D, V187I, G221R, G225E, L304V, A310V, I321L, G322A, L325F, R334T, F340L; nef: S8R, L10V, V11P, P14A, K39R, H40Y, C55L, E59Q, G83A, N126C, N157T, R188H; p17: I68V, Y79H, D93E, M107L, Q108R; p2: V7A; p24: D187E; p6: G16E, E19-, I21G, T22I, S23T, -26L, L38P, V39S, P49L; pro: G86R; rev: A10T, I21L, R39K, P67S; tat: P3L, D5E, R56H, N67T, P70S, R78Q; vif: K33R, L109M, I128L, S186N; vpr: T19A, Q77H, I83V, I84L, V89G, S96T; vpu: V10I, I20V, V26A, K37R, K38R, I43L, E48D, E58D, L61T, S62-, G68-, -69V, -70E, -71V, -72G, -73E, -74Y, -75D, -76L, -77L, -78V, -79G"}}},{"name":"MW353967","node_attrs":{"div":0.29044,"accession":"MW353967","clade_membership":{"value":"other"},"country":{"value":"CV"},"date":{"value":2010.0},"Strain_name":{"value":"CV.10.126"},"LANL_subtype":{"value":"A8"}},"branch_attrs":{"mutations":{"nuc":["A419G","A470C","G495T","A576G","G614T","A619G","C623T","C679A","G712A","C713A","A714C","T722C","T774A","T789C","G803A","A818G","C827T","A839G","A866G","C917T","T944C","G977A","C1060A","G1078C","A1196G","G1199A","G1313A","T1316C","C1403T","G1424A","-1455C","-1456C","-1457A","G1486A","G1489A","C1514T","A1592G","-1719C","-1720T","-1721G","C1722A","G1736A","C1755T","G1760A","G1772A","G1777A","T1796C","T1854C","T1873C","G2065A","A2203G","A2230G","A2293G","G2328A","A2422G","A2545G","G2602A","C2613T","C2941T","A2992T","G3016A","C3023A","A3031C","C3067T","A3167G","C3171G","A3200T","G3211A","A3229G","G3250A","A3367G","G3523A","A3592G","A3642C","C3653G","A3682T","A3715G","A3757G","A3833C","G3866A","C3892T","G3965A","T4144C","G4145T","A4176G","G4186A","G4220A","G4228A","G4244A","A4293G","G4301C","A4427T","C4428T","A4432C","T4441A","T4656C","G4695A","G4696A","T4738C","A4878G","C4911T","G4913A","A5049G","A5061G","G5087A","G5140A","C5168G","G5170A","A5247G","A5305T","G5308A","A5357G","C5358A","T5515C","G5546A","A5547C","A5575G","A5611T","T5613A","C5684T","T5688A","A5709C","C5787A","A5788T","C5789T","A5793C","G5794A","A5796T","T5799G","G5830A","A5861G","C5869A","A5946G","T5956G","C5958A","C6097T","C6115T","A6131C","T6154C","G6158A","-6165C","A6174T","-6175G","A6176-","C6178-","T6181-","A6186C","T6187A","C6189T","A6194T","-6196C","-6201G","-6202C","-6203G","-6205A","-6206C","-6207C","-6208A","T6210C","-6211T","-6212C","-6215C","A6222C","A6230G","A6282G","G6323A","T6341A","A6342G","T6343C","A6346G","C6347A","A6349G","G6403A","T6457G","A6462G","C6482A","T6634C","A6636C","A6639T","A6684G","A6685G","T6690-","-6733A","-6734G","-6735A","-6736T","C6758T","A6776G","A6780C","A6790G","A6800G","T6932A","G6935C","C6958T","-6969T","A6971C","-6972A","-6973T","-6975C","-6976A","-6981T","-6982G","-6983A","-6984G","C6988T","A6997C","T7009A","C7015G","A7089G","A7094G","T7127A","T7150G","A7290G","T7462C","A7533G","A7583C","C7605T","T7606G","T7609C","A7691C","T7796A","A7807G","A7887G","C7906T","T7930C","A7931C","A7971G","C7993A","C8080A","G8110A","C8120-","T8121-","T8122-","T8124G","A8130T","C8131G","T8155C","T8164C","T8200C","T8278G","A8323T","G8370T","G8469A","T8640C","A8656G","A8660G","C8688A","C8699T","T8770A","A8794G","G8795T","C8812A","A8823G","G8830A","A8859G","G8871C","C8921T","A8922C","A8954G","C8960A","A8980G","C9003T"],"INT":["V31I","D64N","A124S","D134G","G149R","E157K","K173R","V176L","T218L","K219N","N222K"],"RT-p51":["R78K","A173V","L310I","E312D","R358G","S359C","T369S"],"RT-p66":["R78K","A173V","L310I","E312D","R358G","S359C","T369S","R512K","E516A","Q520E","E529D"],"gp120":["T3A","N5K","K31R","D34E","K93Q","-107M","-109M","-110T","I126V","K143R","D157N","Y163S","N201K","K203R","P210T","D261A","E262V","H302Y","T308A","K309A","K316E","S360T","G361Q","-367F","-368N","T371F","-379S","K412R","L425I","N432Q","E436T","T437N","E479G"],"gp41":["K77R","T94P","T101M","Q129K","I130L","S165T","K195R","T210P","E223G","L273R","L274G","G275L"],"nef":["V43I","K105R","H116N","F143Y","E151G","N161D","S163N","M173V","D177H","R194L","C206*"],"p17":["A54S","T81A","K95R","T115K"],"p2":["N11P","-12N"],"p24":["L15I","T110N","G116A"],"p6":["S24P","P25L","R33K"],"p7":["R7K","S8N"],"pro":["I19T","H69Q","M89I"],"rev":["E11T","Y28P","R32G","Q49K","L78I","D88N","S92G","G93T","T94E","Q95T","S103P","S106P"],"tat":["Y47H","R57N","N67D","I74T"],"vif":["G37K","V51A","I98V","K155E","I159V","G185E"],"vpr":["L22V","N48S","I84M"],"vpu":["T2S","D60E","N80-","N81D"]},"labels":{"aa":"INT: V31I, D64N, A124S, D134G, G149R, E157K, K173R, V176L, T218L, K219N, N222K; RT-p51: R78K, A173V, L310I, E312D, R358G, S359C, T369S; RT-p66: R78K, A173V, L310I, E312D, R358G, S359C, T369S, R512K, E516A, Q520E, E529D; gp120: T3A, N5K, K31R, D34E, K93Q, -107M, -109M, -110T, I126V, K143R, D157N, Y163S, N201K, K203R, P210T, D261A, E262V, H302Y, T308A, K309A, K316E, S360T, G361Q, -367F, -368N, T371F, -379S, K412R, L425I, N432Q, E436T, T437N, E479G; gp41: K77R, T94P, T101M, Q129K, I130L, S165T, K195R, T210P, E223G, L273R, L274G, G275L; nef: V43I, K105R, H116N, F143Y, E151G, N161D, S163N, M173V, D177H, R194L, C206*; p17: A54S, T81A, K95R, T115K; p2: N11P, -12N; p24: L15I, T110N, G116A; p6: S24P, P25L, R33K; p7: R7K, S8N; pro: I19T, H69Q, M89I; rev: E11T, Y28P, R32G, Q49K, L78I, D88N, S92G, G93T, T94E, Q95T, S103P, S106P; tat: Y47H, R57N, N67D, I74T; vif: G37K, V51A, I98V, K155E, I159V, G185E; vpr: L22V, N48S, I84M; vpu: T2S, D60E, N80-, N81D"}}}]}]}]}]},{"name":"other_NODE_0000047","node_attrs":{"div":0.18525999999999998,"clade_membership":{"value":"other"}},"branch_attrs":{"mutations":{"nuc":["G43A","A50G","-159A","G166A","A214T","A571T","G716-","C1245T","G1474A","G1476A","G1687A","A1691G","A1743G","T1754C","C1775A","G1784A","T1828A","A1839G","A1857T","T1864C","T1873C","G1912A","A3787C","A3886G","A4182C","T4412C","T4543A","A5236G","G5359C","C5371G","G5448A","A5581G","-5612A","T5616A","T5627C","A5628T","C5639G","A5655C","A5659G","T5660C","A5664C","G5692C","A5701G","A5715G","C5727A","A5734C","C5769A","C5827T","A5840T","A6024C","C6198G","A6456G","G6481A","G6547A","-6833A","-6834A","A7040G","A7152-","-7162G","T7604G","C7938A","A8143G","C8171T","A8180G","C8221A","C8223T","G8240A","G8242C","G8280T","A8459G","G8590C","A8591T","T8786G","A8893G","T9017C","-9109T"],"INT":["K136T","D256E"],"gp120":["H324Q","K361Q","I396V"],"gp41":["S101A","T212H","S293G","T307I","E313N","G326F"],"nef":["G83A","K184R"],"p17":["Y79F"],"p6":["S3N","T22A","Q30P","D32E","L50*"],"p7":["G4S"],"pro":["K14R","K20I"],"rev":["A108V","E111G"],"tat":["I69V","P77T"],"vpr":["R85P","A89G"],"vpu":["V7A","A11G","I18A","E29Q","I43L","H73-"]},"labels":{"aa":"INT: K136T, D256E; gp120: H324Q, K361Q, I396V; gp41: S101A, T212H, S293G, T307I, E313N, G326F; nef: G83A, K184R; p17: Y79F; p6: S3N, T22A, Q30P, D32E, L50*; p7: G4S; pro: K14R, K20I; rev: A108V, E111G; tat: I69V, P77T; vpr: R85P, A89G; vpu: V7A, A11G, I18A, E29Q, I43L, 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R20K, S119P; RT-p51: T35V, D123E, S162C, E207Q, Q245V, K356R, R358K, T377Q, T403M; RT-p66: T35V, D123E, S162C, K207Q, Q245V, K356R, R358K, T377Q, T403M, R463K, N519S, S534A; gp120: T3S, E4D, K18E, E19D, T21D, T23P, D34S, V37S, Q86E, N108-, N113-, E125D, N158-, N159-, S162-, T170V, T174K, E183D, N201R, K204E, V242I, I243M, D251N, T255V, E262K, V264I, Q300K, H302Y, N304E, S306N, K312E, L314I, K315Q, A318K, E319A, R322A, Q324S, F325Y, -326N, K329I, I331S, S336P, P341L, M345T, G351R, Q361E, T366S, W367N, -368N, -372N, N397R, E401R, K404Q, S412A, R416T, L425I, L426I, -433S, N434T, G443A, E464K, K474R, Q479E; gp41: N42S, I84L, M118I, L130H, E148D, D232G, A243P, F263L, R277S, V318I, A325G, N331H; nef: G3S, I10V, K39R, E158N, E176D; p1: I5L; p17: G62S, D93E, I107L, T115M, D121G; p2: -10A, -12S; p24: M10P; p6: P5L, E29G, K33-, E34-, Y36-, P37-, T39I; pro: L63P; rev: S61T, A68P; tat: N24K, K29R, Q54H, S61G; vif: F39C, R41K, R47T, H48N, K50R, V51I, D61E, D101G, L109Q, I128R, R132S, I154V, G185D; vpr: Y15H, I84S, Q86R; vpu: A16G, T24A, D44E, E66D, P76-, D78V, V79G, D81N"}},"children":[{"name":"AY900571","node_attrs":{"div":0.27465,"accession":"AY900571","clade_membership":{"value":"other"},"country":{"value":"CU"},"date":{"value":2003.0},"Strain_name":{"value":"CB118"},"LANL_subtype":{"value":"CRF23_BG"}},"branch_attrs":{"mutations":{"nuc":["A461C","C558A","A576G","A653G","G706A","A711G","T824C","C988A","G992A","C1005G","T1052C","G1090A","A1208G","C1211T","C1220T","G1232A","C1360G","A1361T","G1394A","G1443A","A1474G","A1529T","C1571A","G1592T","G1664A","T1676C","G1727A","A1776C","T2043C","A2216T","A2293G","G2294A","T2383C","G2392T","T2597C","A2627T","C2680T","G2725A","G2925A","G2951A","G3173A","T3197C","C3207T","G3316A","T4216C","A4243G","A4522G","A4536G","A4650C","T4672A","G4677A","A4736G","G4779A","C4820T","A4951G","G5062T","G5141C","C5234G","A5235T","G5296A","C5306T","T5313C","C5397T","G5403C","A5448G","G5462T","C5496A","A5499G","C5508A","A5545G","A5556G","G5558A","A5576T","T5604G","A5613C","A5632G","A5691T","A5693T","G5701C","T5844G","C5911T","G5915T","C5998T","T6026C","A6065C","T6155C","-6167A","-6169G","-6170G","-6172A","-6173G","-6175C","A6176T","A6177G","A6181G","A6188T","A6189G","A6192C","A6198C","-6208A","-6210T","-6211G","-6212G","-6214A","-6215C","-6218T","-6220A","-6222C","-6225C","C6229T","A6276G","G6277T","G6314A","A6326G","T6331G","A6338G","G6368A","A6430G","G6442A","A6489G","A6574G","C6619T","A6639G","A6640C","G6647A","A6648C","A6695T","A6733T","G6743A","A6752G","A6759T","A6765T","A6780C","A6781C","A6796G","C6826A","T6827C","-6832G","A6833C","A6835C","A6837G","-6838A","A6842-","C6843-","A6844C","A6854G","A6855G","A6900T","A6936G","T6949C","G6954-","G6968A","G6970T","-6972G","-6974A","-6975A","-6976T","A7095G","A7106G","T7147G","A7148C","A7149C","-7152A","A7155G","A7158G","G7160A","G7162T","A7163-","C7179T","A7296G","A7313C","A7315G","C7392T","G7517C","T7622A","T7630A","C7651T","A7666G","G7688C","G7689A","A7721C","C7723A","A7743G","T7783C","G7831A","T7865A","T7867G","A7912C","T8016C","G8017C","A8029G","C8033A","C8037T","G8114T","A8130G","G8134C","T8171C","A8222G","T8243G","G8350A","A8367-","G8368-","C8369-","T8371-","A8372-","G8373-","T8374-","T8375-","G8376-","G8377-","A8378-","C8382G","A8409G","C8499G","T8505C","C8514G","T8567C","A8647G","C8648G","C8747T","G8786A","G8798T","A8812G","C8869A","G8875A","A8876G","T8935G","-8971G","-8974G","A9015T","T9036-","T9054G"],"INT":["T124A","N134D","N254S"],"RT-p51":["M41L","D67N","I178L","R277K","A286T","A360T","A371V"],"RT-p66":["M41L","D67N","I178L","R277K","A286T","A360T","A371V"],"gp120":["D21Y","N71H","N105K","-106V","-107D","-108C","-109E","-111R","-112N","-113C","-114T","-115T","-124A","K141S","V154M","-158D","-159K","-162G","K212R","K262S","E265T","I281F","D297N","K300E","Y302F","E304V","E309A","I314M","T330-","N334G","Q335P","N349I","E361G","-371S","N414S","S418V","E438-","T439-","P442L","E481G"],"gp41":["I4L","M24I","A30V","V72L","S107T","D109E","E119Q","G129H","H130Q","N140Q","Q147R","M176I","F188M","E225G","V238A","L244I","A245V","V271L","I307V","W314G","L340F"],"nef":["S3N","S9-","V10-","V11-","G12-","P14A","T23A","C55R","L58V","Y102W","E152D","N157S","E177D","R178K","L198R"],"p17":["E42D","L75I","T81A","S124N","S126G"],"p2":["V7I","S8P"],"p24":["P86Q","P92A","S120N","T210S"],"p6":["-33Q","-34D","-36I","L38-","I39-"],"p7":["E21D","E42D"],"pro":["I82T"],"rev":["K14R","A15T","I21F","E57Q","T61A","A62D","S89I","G96Q","S107P","V108A"],"tat":["E9D","R29M","R57G","G61D","N67I"],"vif":["N22H","M29K","V31I","V65I","N122S","R159I"],"vpr":["E13Q","Q44V","I70T"],"vpu":["Q2H","I9V","Q29L","E32Q","D60E","E62A","E63A","V69D","D70F","-71D","-72H"]},"labels":{"aa":"INT: 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S24N, L63I, L74I, I101L, T124G, E256D; RT-p51: K20R, A158S, E177D, A200T, E204K, Q245E, P272A, A297R, D324E, G333E, Q334L, I341V, S359G, T377Q, K385R, E399D, T400A; RT-p66: K20R, A158S, E177D, A200T, E204K, Q245E, P272A, A297R, D324E, G333E, Q334L, I341V, S359G, T377Q, K385R, E399D, T400A, D460N, R461K, V467I, S468C, H483N, N519S, S534A, S554A; gp120: N5K, D34N, P57G, K69Q, N105D, -106F, -107K, -109D, -111S, -114N, -115S, -116S, -117E, -118R, -119I, -122E, -123R, -124G, E136S, I137R, D139G, K141L, K142Q, D157T, N160S, N161Y, I166V, N167S, T172V, F195Y, K212T, K224R, V227I, I243V, S246Y, E247K, L249V, D251N, T255I, H280P, I281M, Q287R, F289V, D297N, V305L, S306N, R307G, N311K, K315R, -326R, S336T, S337T, I343V, T344V, S347N, S360T, -368I, -369W, S370N, -373S, -374T, -375E, -376E, -377S, -378N, -379N, -380N, -381D, -382S, I386L, M398R, N414Q, S418L, T437S, G443A, K462R; gp41: Q32L, V69I, N96A, D109N, N125S, L130V, N133T, E137N, N140S, A151E, M176I, G215E, S251N, S256T, H258R, D305N, 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D73N"}}},{"name":"DQ366663","node_attrs":{"div":0.12834999999999996,"accession":"DQ366663","clade_membership":{"value":"CRF53_01B"},"country":{"value":"MY"},"date":{"value":2004.0},"Strain_name":{"value":"04MYKL016_1"},"LANL_subtype":{"value":"CRF53_01B"}},"branch_attrs":{"mutations":{"nuc":["A426C","A464G","C471G","C583T","C587T","T635A","T636C","C655T","A664G","G667A","A678C","G709A","C710T","A725G","C731T","T858C","C979T","T1052C","C1137T","T1335C","T1362C","C1444T","G1586A","G1621A","C1627T","C1689A","A1691G","T1791G","G1845A","A2002G","A2007G","T2245A","C2356T","C2386A","C2575T","G2707A","G2909C","A2918C","A2925G","C2978T","A2985G","C3129A","C3178T","T3181C","A3200G","A3241C","G3307A","G3431T","T3668C","A3866G","A3955G","A4083G","A4182G","A4228G","A4695C","C4761A","G4769A","T4772A","C4826A","T4865A","A5112G","A5246C","T5294C","C5384T","T5412G","C5438A","A5626T","T5628G","T5695G","T5696C","G5734A","C5801G","G5812C","T5884G","T5917G","A6024C","C6166T","A6167G","A6168T","T6169G","-6170A","-6171C","-6172C","-6174A","-6175A","T6178C","T6180A","C6181T","C6183G","T6184C","A6186C","T6187A","A6194G","A6197T","G6201A","-6203A","-6204G","-6205A","-6217A","G6224A","-6225T","-6226A","-6229A","-6230A","T6241C","A6251G","G6253A","A6276C","T6287A","A6303G","T6328C","A6330G","T6337C","T6427G","T6446C","G6463A","T6466G","G6577A","G6605A","G6647A","A6659T","C6660T","A6692T","A6734G","T6735A","G6764C","G6788A","A6818G","C6824A","A6840G","T6849G","T6888C","G6889A","A6937C","-6955C","-6956A","-6957T","-6958A","-6959A","-6960A","-6985A","-6986A","-6987A","-6988T","-6989A","-6990A","-6991C","-6993C","-6994G","-6995G","-6996G","-6998G","-7000G","-7001T","-7002G","T7039C","T7059C","T7090G","A7101C","A7152T","A7155G","A7158G","A7161C","C7164A","A7175C","A7190G","A7195G","A7197G","A7540G","A7542C","A7626T","G7734A","T7801A","A7935T","G7977A","G8019C","G8055A","T8097C","G8145T","C8223T","G8330T","T8366C","G8421A","G8469A","G8534T","C8568T","G8588A","A8647G","C8648G","T8700C","T8708C","A8827G","G8871C","A8873C","G8875A","T8935G","G8936T","A8947T","G8983A"],"INT":["I31V","I60M","K103R","Q136R"],"RT-p51":["A272P","K275Q","K277R","E297G","P345Q","T369A"],"RT-p66":["A272P","K275Q","K277R","E297G","P345Q","T369A","A446S"],"gp120":["D21E","H57P","V126I","K127R","M133V","K141T","Y145N","K150R","N159S","S162N","N204K","D251N","T269F","T280S","E304Q","E312K","E319K","K322E","H324N","K329R","M345T","K361N","S365N","-368I","-369K","-378N","-379N","E381G","-382G","-383C","V402A","S412R","S414N","N416T","N433I","N434S","N435S","E436A","N446D","I447M","K448R"],"gp41":["M54L","K80T","Y108F","R144K","N166K","H211L","G225E","S239T","S251N","L265S","G281V","A307V","A343S"],"nef":["A27T","V43I","S55C","T56A","Y102W","F120L","Q125H","N162S","E177H","R178K","S188A","L198R","Y202F"],"p17":["M31L","L46V","A83V","K110R","S111N","T115P","S125N"],"p2":["Q6H","A7V","-10T","A11G"],"p24":["E71D","T83V"],"p6":["L38V"],"p7":["R52K","A54V"],"pro":["G16E","K70R"],"rev":["E57D","R99S"],"tat":["P3L","N12K","A21D","I76F"],"vif":["K37Q","L59I","H80Q","N93K","K176E"],"vpr":["Q3R","N48H"],"vpu":["S7W","F30A","K35R","V43I","A65G","-68L","V69-"]},"labels":{"aa":"INT: I31V, I60M, K103R, Q136R; RT-p51: A272P, K275Q, K277R, E297G, P345Q, T369A; RT-p66: A272P, K275Q, K277R, E297G, P345Q, T369A, A446S; gp120: D21E, H57P, V126I, K127R, M133V, K141T, Y145N, K150R, N159S, S162N, N204K, D251N, T269F, T280S, E304Q, E312K, E319K, K322E, H324N, K329R, M345T, K361N, S365N, -368I, -369K, -378N, -379N, E381G, -382G, -383C, V402A, S412R, S414N, N416T, N433I, N434S, N435S, E436A, N446D, I447M, K448R; gp41: M54L, K80T, Y108F, R144K, N166K, H211L, G225E, S239T, S251N, L265S, G281V, A307V, A343S; nef: A27T, V43I, S55C, T56A, Y102W, F120L, Q125H, N162S, E177H, R178K, S188A, L198R, Y202F; p17: M31L, L46V, A83V, K110R, S111N, T115P, S125N; p2: Q6H, A7V, -10T, A11G; p24: E71D, T83V; p6: L38V; p7: R52K, A54V; pro: G16E, K70R; rev: E57D, R99S; tat: P3L, N12K, A21D, I76F; vif: K37Q, L59I, H80Q, N93K, K176E; vpr: Q3R, N48H; vpu: S7W, F30A, K35R, V43I, A65G, -68L, V69-"}}}]},{"name":"CRF53_01B_NODE_0000002","node_attrs":{"div":0.11541999999999998,"clade_membership":{"value":"CRF53_01B"}},"branch_attrs":{"mutations":{"nuc":["A665G","T668C","G697A","G1078C","C1247T","G1418A","T1752C","A2230G","C2236T","G2350A","T2392G","G2727A","T2873C","G4243A","C4679A","T4701G","A4774G","T5237C","C5651T","T5695A","A6185G","G6195A","A6212G","T6242A","T6634C","G6716A","-6955C","-6959A","-6961A","-6986A","-6987A","-6988T","-6989A","-6990C","-6993C","-6995G","-6998T","-7000T","-7002C","C7008A","T7014C","G7106A","T7162G","G7456A","G7534A","A7957G","A8130G"],"RT-p51":["S211N"],"RT-p66":["S211N"],"gp120":["S130T","-378N","-379T","-382C","T385N","I387T"],"gp41":["L263F"],"p17":["G121D"],"p2":["-10T"],"p24":["G116A"],"p6":["S25P"],"rev":["T37A"],"tat":["D83G"],"vif":["F39V","K63R"],"vpr":["Y45H"],"vpu":["A15V","F30I"]},"labels":{"aa":"RT-p51: S211N; RT-p66: S211N; gp120: S130T, -378N, -379T, -382C, T385N, I387T; gp41: L263F; p17: G121D; p2: -10T; p24: G116A; p6: S25P; rev: T37A; tat: D83G; vif: F39V, K63R; vpr: Y45H; vpu: A15V, F30I"}},"children":[{"name":"JX390612","node_attrs":{"div":0.14971999999999996,"accession":"JX390612","clade_membership":{"value":"CRF53_01B"},"country":{"value":"MY"},"date":{"value":2010.0},"Strain_name":{"value":"10MYKJ067"},"LANL_subtype":{"value":"CRF53_01B"}},"branch_attrs":{"mutations":{"nuc":["G256-","A278G","G279A","-280G","T307C","T434C","G530A","T572C","A579G","A605G","G614T","A644G","G654A","C655T","G667A","G740A","A806G","C830T","A833T","C917T","C968T","G978A","G1019A","A1079G","C1118T","C1136A","C1178T","G1232A","A1337G","C1442A","G1455A","G1472A","A1475G","G1508A","C1541T","A1642G","G1643A","C1676T","C1679T","C1680A","A1685G","G1687A","C1689A","A1691G","G1715A","T1728C","A1736G","G1778A","A1780G","T1792C","C1795T","A1838G","G1840A","G1845A","A1897G","A1907G","A1982G","G1991A","T2104C","A2113T","C2120T","T2209C","A2211C","G2222A","T2269C","G2332A","C2353T","C2356T","T2440C","A2524G","A2560G","A2579T","T2613G","G2656A","A2665G","A2710G","T2723A","C2776T","G2808A","C2831T","A2902G","C2944T","G2980A","G3001A","A3070G","G3071A","A3103G","A3124G","C3266T","G3279A","G3316A","G3438A","G3490A","A3583G","A3682C","T3755G","A3761G","C3843T","A3866G","C3892T","G3952A","T3962G","C3995A","G3997A","C4042T","G4063T","C4126T","C4162A","G4178A","T4216C","A4270G","C4318T","C4357T","A4391T","G4623A","G4642A","A4735G","T4742C","T4754G","C4820A","G4978A","G5065A","A5086G","G5128A","A5142T","G5155A","A5269G","T5292C","A5462T","G5599-","T5600-","A5601-","T5602C","T5606A","T5617C","G5652A","T5659A","C5687G","G5699A","G5734A","G5739A","C5802T","C5866T","T5878C","G5915C","T5917A","T5992C","A6008G","C6023T","A6030G","G6085T","T6115C","G6133A","T6148C","A6159T","A6167C","A6168C","T6169C","-6170A","-6171A","-6172T","A6173G","-6174T","-6175T","A6177C","A6182T","A6188C","C6189T","C6196G","T6199A","G6201A","C6202A","-6203G","-6204G","-6205C","A6206G","-6217G","G6227-","A6228-","T6252C","G6253A","C6263A","A6275G","A6281C","T6285C","T6331C","A6336G","T6340G","T6343C","T6364C","T6382G","A6388G","G6547A","G6572A","G6577T","G6588A","G6605A","A6609G","C6618A","T6637C","A6639G","T6655G","C6660T","C6673T","A6686-","G6687-","T6688-","A6689-","T6690-","A6691-","A6692G","C6693G","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","A6718G","A6734G","T6735A","G6743A","A6752C","G6764A","A6765C","A6767G","G6773A","A6791G","C6792T","A6797G","A6798G","A6799G","A6809G","A6812G","G6821A","C6843G","A6844C","T6849C","C6854A","C6885T","A6886G","T6888C","A6935G","A6948G","C6951A","-6956A","-6957C","-6958A","-6960T","-6962A","-6963A","-6964G","-6991C","-6994G","-6996G","-7001G","T7003G","C7012T","A7027G","G7055A","T7059C","A7060G","A7095T","T7107A","A7111G","A7112G","A7152T","A7154G","A7155G","G7160C","A7163C","G7168A","A7190G","G7212A","T7217C","C7238G","G7269A","G7390A","A7396G","G7441A","T7444C","T7489C","A7570G","C7597T","A7721G","C7732A","A7735G","T7748C","A7755C","G7807A","A7818G","A7820T","A7862G","G7885A","T7913G","T7930G","T7932A","G7939T","G7992A","G8002A","C8033A","C8037T","C8038G","C8077T","A8092T","A8093G","C8103T","T8164C","A8188G","C8196T","G8219A","G8255A","A8273G","G8274C","C8277T","A8337T","G8354A","T8366C"],"INT":["A23V","I31V","L63V","L74I","E96D","V135I","T206S","G283D"],"RT-p51":["E6D","P9S","K39T","E43K","S162C","I173R","L210M","R238K","V326I","R395K"],"RT-p66":["E6D","P9S","K39T","E43K","S162C","I173R","L210M","R238K","V326I","R395K","R448K","E529D","S554A","I556V"],"gp120":["D21Q","N52D","H57Y","E59G","Q77H","N102I","K127R","M133T","L137I","K141E","K143Q","V144A","N161S","S162K","E240K","E241D","R245K","D251N","N252S","T255N","K262R","N267K","T269I","S278G","T280H","V288M","D294E","D297N","K300Q","E304T","I305V","G307R","T313V","K315G","K320E","E323K","T330S","I332T","Q334K","T344M","M345T","K361E","T366N","-368T","-369I","-370K","E381G","-383A","G401R","V402A","S414I","V418K","N420D","N433I","N434G","E436N","N437Q","N446D","S453N","Q462E","R472K"],"gp41":["M54L","N140D","D143E","E151A","K172R","I173L","I187V","L204V","I210N","Q212H","G230D","L244I","A245V","I264V","A267V","R277S","T298I","A306T","V318I","R324A","A325V","Q345L"],"p1":["K4R"],"p17":["I82V","E93D","V107I","S111N"],"p2":["A11S"],"p24":["M96I"],"p6":["L1I","S3N","F17L","E34G","L38S","A39V"],"pro":["K14E","G16E","N37D","I62V","E65K"],"rev":["Y28E","A31S","V52I","L64V","P77S","H82C","S106P","T114A"],"tat":["K29I","L74R","S75T","S77I"],"vif":["V13I","R19K","K50R","H56Q","D78E","R131H","R160K","K167R","R181K","N186Y","S190N"],"vpr":["E13V","I63T"],"vpu":["L18I","A27G","R31K","V43I"]},"labels":{"aa":"INT: A23V, I31V, L63V, L74I, E96D, V135I, T206S, G283D; RT-p51: E6D, P9S, K39T, E43K, S162C, I173R, L210M, R238K, V326I, R395K; RT-p66: E6D, P9S, K39T, E43K, S162C, I173R, L210M, R238K, V326I, R395K, R448K, E529D, S554A, I556V; gp120: D21Q, N52D, H57Y, E59G, Q77H, N102I, K127R, M133T, L137I, K141E, K143Q, V144A, N161S, S162K, E240K, E241D, R245K, D251N, N252S, T255N, K262R, N267K, T269I, S278G, T280H, V288M, D294E, D297N, K300Q, E304T, I305V, G307R, T313V, K315G, K320E, E323K, T330S, I332T, Q334K, T344M, M345T, K361E, T366N, -368T, -369I, -370K, E381G, -383A, G401R, V402A, S414I, V418K, N420D, N433I, N434G, E436N, N437Q, N446D, S453N, Q462E, R472K; gp41: M54L, N140D, D143E, E151A, K172R, I173L, I187V, L204V, I210N, Q212H, G230D, L244I, A245V, I264V, A267V, R277S, T298I, A306T, V318I, R324A, A325V, Q345L; p1: K4R; p17: I82V, E93D, V107I, S111N; p2: A11S; p24: M96I; p6: L1I, S3N, F17L, E34G, L38S, A39V; pro: K14E, G16E, N37D, I62V, E65K; rev: Y28E, A31S, V52I, L64V, P77S, H82C, S106P, T114A; tat: K29I, L74R, S75T, S77I; vif: V13I, R19K, K50R, H56Q, D78E, R131H, R160K, K167R, R181K, N186Y, S190N; vpr: E13V, I63T; vpu: L18I, A27G, R31K, 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E61D, Q127R, R131H, S137A, N140S, Y147F, I159V, V166T, K176E; vpr: Q3R, P37N; vpu: M1I, T2S, E5Q, F30C, Q31L, F74V"}}}]}]}]}]}]}]}]},{"name":"NODE_0000689","node_attrs":{"div":0.09856,"clade_membership":{"value":"other"}},"branch_attrs":{"mutations":{"nuc":["T851C","G1455A","G1664A","C1676T","C1679T","G1858A","A1963G","C2098A","T2199C","C2211A","A2215G","A2222G","T2299C","A2380G","G3279A","G6234A","A6336G","A7195G","A8794G"],"RT-p51":["V35T","T39K","K43E","M178I","R395K"],"RT-p66":["V35T","T39K","K43E","M178I","R395K"],"gp120":["I447M"],"gp41":["N113D","D230G"],"nef":["K151R","S188A"],"p6":["Y36P"],"tat":["S75P"]},"labels":{"aa":"RT-p51: V35T, T39K, K43E, M178I, R395K; RT-p66: V35T, T39K, K43E, M178I, R395K; gp120: I447M; gp41: N113D, D230G; nef: K151R, S188A; p6: Y36P; tat: 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A23V; RT-p51: S123D, V179T, E245Q, A272P, T369A, I382T, M403T; RT-p66: S123D, V179T, E245Q, A272P, T369A, I382T, M403T, R461K; gp120: N108-, T110-, T313V, -384D; gp41: K106R, T208I, H212Q, R221G, S239N, G293V, A325V; nef: A27T, R59E, N157T, M173I, E174D; p17: V107A, N109K, K110R; p6: G18-, E19-, T21E, P25A, -26P, K33R, L35T, P36-, P37-, N47S; p7: K7R, G8N, Q9P, K10R, R11K, I12T, -13V, L24I; pro: I15V, L19I, I93L; rev: S31A, K39R, T62A, T68A; tat: S23N, P73S, I77S; vif: R131S; vpu: K35Q","clade":"CRF78_cpx"}},"children":[{"name":"KU161145","node_attrs":{"div":0.15943,"accession":"KU161145","clade_membership":{"value":"CRF78_cpx"},"country":{"value":"CN"},"date":{"value":2013.0},"Strain_name":{"value":"YNTC88"},"LANL_subtype":{"value":"CRF78_cpx"}},"branch_attrs":{"mutations":{"nuc":["A412G","G424A","C471A","A503G","G542A","A562G","G607A","C626T","-655A","A656G","A664G","A699G","T773C","T774A","A776C","G810A","C871G","A881G","T902C","C922G","G978A","A1142G","G1268A","C1280T","G1302A","T1316C","T1329G","G1388A","T1422C","G1424A","C1446A","A1448C","C1449A","A1450G","T1451G","G1452-","C1453-","A1454-","A1455-","T1457-","-1458A","-1459A","-1460T","C1491T","A1500C","C1535T","A1643G","T1681C","A1709G","C1788A","A1804G","T1828C","A1832T","A1839G","A1857G","G1963A","G1969A","T2035C","A2286G","C2335T","C2353T","G2459A","C2584T","C2596T","A2612T","A2615C","A2665G","T2672C","G2683A","C2694T","T2719C","T2737G","C2806T","A2827T","C2857T","G2951A","C3013T","C3056T","G3094A","A3115G","A3164C","C3201T","A3224T","C3225T","A3274G","T3358C","G3398A","T3496C","G3538A","T3544C","T3551C","T3559C","C3628T","G3685A","T3778C","T3811C","A3813G","G3925A","A3985G","G3989A","A4087G","A4130C","G4131C","T4135C","A4222T","A4254G","A4306G","A4407G","T4477C","C4501T","C4724T","C4761A","G4769A","A4774C","A4790C","G4805A","C4826T","A4845G","T4940C","A4977G","G4978A","A4988C","A4994T","G5036A","C5041T","C5047T","A5057G","T5062G","G5065A","A5112G","T5147C","G5225A","G5226A","A5246G","T5254C","A5282C","T5293G","G5312A","C5351A","G5385A","C5397T","C5438A","C5454T","T5467G","G5468T","A5557G","G5561A","A5599T","A5611T","G5620C","G5668A","G5699A","A5781G","G5824A","A5848G","G5907A","T5917G","G5972A","C6026A","C6052T","G6076T","G6092A","T6142C","C6148T","A6164G","C6166T","A6168C","-6170T","-6172C","-6174T","A6185G","A6186T","A6188G","A6189G","A6194G","-6198G","-6201C","-6202A","-6204T","-6207G","T6210A","-6211T","A6212T","-6216C","-6217A","-6220T","A6221G","-6222A","G6224-","G6227-","A6228-","A6232G","T6242A","A6262C","C6263A","G6277A","C6278A","T6287C","T6289G","G6304T","G6323A","T6325C","A6326C","T6328G","A6330G","A6333G","A6338G","-6340A","T6347C","T6355C","T6358C","T6385C","C6441T","T6466G","A6508G","G6532A","C6559A","A6595G","G6628A","A6638G","C6652T","C6692T","A6693C","A6733G","A6751G","A6785G","T6787C","G6788A","C6792T","T6794C","G6806A","C6807A","T6808A","A6810G","C6824T","C6850A","T6863G","T6888C","A6900C","A6947G","G6948A","C6951G","G6954A","-6955T","-6956T","-6957A","-6958T","-6959A","-6960A","-6961T","T7014G","A7036G","G7054A","T7078C","A7085G","T7090G","A7095G","A7096G","T7114C","A7152C","A7155C","A7157G","A7158C","T7159A","A7160G","A7163G","G7182C","C7238G","G7269A","G7276A","G7289C","A7348C","G7390A","A7399G","T7403C","C7463A","A7533G","A7570G","C7590A","T7624C","T7625A","A7626T","T7627A","G7640A","C7645T","A7689G","C7691T","A7693C","G7702T","A7703C","A7705G","G7712A","A7713T","G7720A","A7721G","A7722G","A7734G","G7735A","T7747G","A7753G","T7774C","A7816C","A7880G","T7919C","A7931T","C7932T","A7935T","T7936C","C7960A","A8023G","T8047C","G8050T","T8064G","A8069C","G8070T","G8079T","C8106T","T8171G","T8172C","G8181T","T8209C","C8213G","A8222G","C8223T","G8276A","T8279G","C8294A","G8304C","A8323C","G8329A","G8349A","A8367T","C8369G","A8370C","T8371C","A8372T","G8373C","A8386G","G8387A","A8397C","G8398C","A8400C","T8401C","A8402T","A8403C","G8404C","A8407C","T8411G","C8416G","C8422G","G8430T","T8431C","G8433C","C8437A","A8438T","G8439C","G8448C","C8451G","A8457G","A8458T","A8461C","G8466A","G8469A","A8474G","A8475-","G8476-","T8477-","A8478-","G8479-","T8480-","T8485A","G8486T","-8487G","-8488C","-8489T","-8490A","-8491A","-8492T","A8494C","A8497C","T8498C","C8500G","T8501G","G8506C","T8507A","G8508A","T8509C","T8511C","C8514T","G8516A","G8518A","C8521A","A8522T","C8523G","A8525G","G8528A","G8534C","G8537T","A8540C","C8543G","A8553C","G8554C","G8561A","T8563C","T8567G","T8569C","A8570T","A8571T","G8572T","A8577G","T8578G","A8584T","A8586G","G8588T","G8590T","T8597C","A8599T","T8603C","G8605A","T8608A","T8613G","T8614G","A8615G","A8616G","A8617G","G8619C","A8621G","A8622G","G8624T","G8634T","T8636C","G8638C","G8639C","A8656T","A8657C","A8658C","G8659T","C8661G","A8663T","T8668G","T8679A","A8686G","C8688T","A8689T","T8690C","C8692T","A8693C","A8695C","A8696T","T8701G","T8711C","A8716C","A8719G","A8724-","C8725-","A8726-","C8727-","C8728-","A8729-","G8730-","G8731-","G8732-","C8733-","C8734-","A8735-"],"INT":["E13G","M50I","V72I","S119P","K160R","K211R"],"RT-p51":["K64R","E122K","I173L","K174Q","T200I","F214L","A286T","P321S","K357Q","A369V","T377L","I393M","V435I"],"RT-p66":["K64R","E122K","I173L","K174Q","T200I","F214L","A286T","P321S","K357Q","A369V","T377L","I393M","V435I"],"gp120":["R18K","D21E","V40I","L58M","E74D","V80I","V126M","S130T","E136D","L137I","Q142K","Y145Q","K150N","D157N","N158Q","N159S","N160S","S162E","A196V","N204K","K262E","H280S","N311D","E312K","A318K","E319G","H324Y","N327-","S337A","M345T","N34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E13G, M50I, V72I, S119P, K160R, K211R; RT-p51: K64R, E122K, I173L, K174Q, T200I, F214L, A286T, P321S, K357Q, A369V, T377L, I393M, V435I; RT-p66: K64R, E122K, I173L, K174Q, T200I, F214L, A286T, P321S, K357Q, A369V, T377L, I393M, V435I; gp120: R18K, D21E, V40I, L58M, E74D, V80I, V126M, S130T, E136D, L137I, Q142K, Y145Q, K150N, D157N, N158Q, N159S, N160S, S162E, A196V, N204K, K262E, H280S, N311D, E312K, A318K, E319G, H324Y, N327-, S337A, M345T, N349T, S365D, T366S, -367Y, -368Y, -369N, I387R, I411V, S412R, N414R, -433T, N434T, N435A, T436D, N437S, G443A, Q462E, R472K, E479Q; gp41: K77R, A96D, Y108I, D113N, N129S, Q130Y, E133D, I134L, E137I, N140G, K144R, D148E, I193V, F206L, T210F, H211L, L254R, S256L, R259L, A268V, R277S, L290A, L304V, T307V, V325I, W326G, H331N, R334T, L340F; nef: G3S, S9W, I10P, V11L, Q15R, R19P, I20P, R21-, Q22-, T23-, P24-, A26P, E28P, G29R, V30A, G31R, A32E, V33G, Q35R, D38S, K39Q, A42T, V43I, S45-, S46-, M48N, N49A, -50N, -51T, N52T, A53G, C55S, V56T, W57R, A60D, Q61E, E64D, E65D, R71P, V74A, L76P, R77L, M79G, Y81F, K82D, G83V, D86V, S88N, F89Y, L91G, K92G, E93Q, K94D, D98Y, G99A, K105I, R106L, Q107D, I109S, W113R, Y115C, H116F, T117I, Q118P, F120C, Q125P, N126S, T128G, P129I, G130R; p17: K26R, R30K, L46I, K76R, R91K, A107E, T122A; p2: Q8N, N9R, -10N; p24: L15I, V27I, A47G, A64G, V83I, V191I, S200A; p6: L1P, K42R, L50S; p7: P9S, T12P; pro: T12S, K14R, K20R; rev: V16I, Y28F, S30P, I59V, S67P, A68S, Q74P, V108G; tat: A21D, C31V, L36I, S61G, S62N, P75S, I76S, P84Q; vif: L59I, K63T, I87V, S131D, E134D, A152V, T154I, I159R, R160K, K176E; vpr: Q3R, Y15H, G41N, N48D, I60L, I63M, V70I, G94S; vpu: T2S, E5Q, V21I, R31K, D73N, 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I33F"}}},{"name":"CRF79_0107_NODE_0000001","node_attrs":{"div":0.17160999999999998,"clade_membership":{"value":"CRF79_0107"}},"branch_attrs":{"mutations":{"nuc":["T570C","C688T","C1453T","A1486G","G1489C","A1500-","T1501-","T1502-","-1504T","-1505T","G1508A","A1718G","A2007G","T2499C","C2694T","T2735C","G3473A","G3869A","G4060A","G4870A","A5357G","T5515C","A5702G","C5984T","A6192G","A6219G","A6232G","C6238T","T6331C","C6499T","A6520G","G6605A","G6631T","A6669G","A6779G","C6850A","A6854G","-6974A","-6976T","-6978A","A7108G","T7153G","A7154T","A7268G","A7373G","C7392T","A7477G","A7574C","G7668A","C8051A","G8528A"],"INT":["V32I"],"RT-p51":["I135T","T200I","F214L"],"RT-p66":["I135T","T200I","F214L","D460N"],"gp120":["H44Y","D251N","D272G","T385-","R472E"],"gp41":["A30V","I91L","R122K","D133K"],"p17":["Y79H","A107E","A118V"],"p2":["-10V"],"p7":["I12-"],"pro":["K70R"],"tat":["Y47H"],"vif":["I31V","S95N"],"vpu":["K32R"]},"labels":{"aa":"INT: V32I; RT-p51: I135T, T200I, F214L; RT-p66: I135T, 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K32R"}},"children":[{"name":"KY216146","node_attrs":{"div":0.18683,"accession":"KY216146","clade_membership":{"value":"CRF79_0107"},"country":{"value":"CN"},"date":{"value":2015.0},"Strain_name":{"value":"SX15DT013"},"LANL_subtype":{"value":"CRF79_0107"}},"branch_attrs":{"mutations":{"nuc":["T200C","T201C","G279A","-280G","A303T","-304T","G354A","A410G","G665A","A685C","A692C","T979C","C1115A","T1334A","T1335C","A1359T","T1409C","A1719G","A1738G","C1783T","A1921G","A1998G","C2127A","A2254G","A2400G","A2422G","G2566A","G2580A","T2613C","C2665A","T2770C","G2881A","A3136G","A3637C","A3676G","A3761G","A3768G","G3770A","T3793C","A3883C","T3976C","A4694C","G4802A","A4838G","G4976A","C5004A","A5045G","G5048A","G5066A","A5112C","T5237C","G5566A","A5567G","G5619A","A5644G","C5802T","A5864G","C5866A","T5917G","A5962G","A5983C","C6023T","C6026T","G6029A","A6030C","A6044G","C6067A","G6076T","A6158C","C6160T","G6167A","G6195A","-6211G","A6216C","G6217A","T6222G","G6223-","C6224-","A6260G","C6317G","A6325C","T6328G","T6395A","T6427C","T6430C","C6488A","A6730G","A6742G","C6790A","G6807C","C6819A","A6848C","T6857G","C6888T","A6889G","A6926G","G6935A","T6949G","A6954G","C6955G","A6956G","-6957C","-6969A","T6970A","A6971T","-6972T","-6973C","-6975T","-6977T","-6979A","-6980G","-6981G","-6982A","-6983T","-6984A","-6985A","A6987T","T6988C","-6991C","T6994-","T7003-","C7008A","A7026G","G7057A","A7144G","T7150C","A7151G","A7152G","A7157G","A7163C","C7164A","C7170T","G7234A","A7517C","T7555G","A7617C","A7629C","G7640A","A7644G","T7647C","A7655T","C7690A","A7701G","T7713C","G7729T","A7771T","T7959C","C8011A","A8035T","A8098G","G8159A","A8216G","C8451T","G8554A","T8584A","A8604G","A8656G","C8747T","A8780G","A8793G","G8796A","A8815C","G8834A","A8947T","G9006C"],"RT-p51":["T11K","K102R","C162Y","I173T"],"RT-p66":["T11K","K102R","C162Y","I173T","E514D","I556V","K558R","V559I"],"gp120":["N4E","D21E","L57F","E59T","N64D","N71K","E74D","N102H","D105N","N107S","S110G","-118S","-119T","I136V","Q155E","N158K","S181T","R212S","D312E","S318T","A322E","K332Q","T334A","S335A","T345M","N358D","G361S","S365R","K368R","-370G","-385N","K391R","K404Q","N433G","N435D","T437Q","T439I"],"gp41":["I72L","I84M","N105T","N109T","D113N","N114S","M115T","M118L","D129E","K133R","V137A","Q142H","K156N","N166K","G286R","N305D"],"nef":["G3S","E64D","R71K","F81Y","S88G","K105R","R151G","E152K","E158A","Y202F"],"p17":["V7I","Q117P"],"p2":["H6Q"],"p24":["I83T","D128E","T210S"],"p6":["N14D","E19-","T21G","S23T","P24S","-26L","H35L","L38P","V39S"],"pro":["Y67C"],"rev":["T18A","L55I","I63F","S84G","G104E"],"tat":["D64S","S84P"],"vif":["K36N","K176Q"],"vpr":["Q3P","Y45H"],"vpu":["I13V","F30I"]},"labels":{"aa":"RT-p51: T11K, K102R, C162Y, I173T; RT-p66: T11K, K102R, C162Y, I173T, E514D, I556V, K558R, V559I; gp120: N4E, D21E, L57F, E59T, N64D, N71K, E74D, N102H, D105N, N107S, S110G, -118S, -119T, I136V, Q155E, N158K, S181T, R212S, D312E, S318T, A322E, K332Q, T334A, S335A, T345M, N358D, G361S, S365R, K368R, -370G, -385N, K391R, K404Q, N433G, N435D, T437Q, T439I; gp41: I72L, I84M, N105T, N109T, D113N, N114S, M115T, M118L, D129E, K133R, V137A, Q142H, K156N, N166K, G286R, N305D; nef: G3S, E64D, R71K, F81Y, S88G, K105R, R151G, E152K, E158A, Y202F; p17: V7I, Q117P; p2: H6Q; p24: I83T, D128E, T210S; p6: N14D, E19-, T21G, S23T, P24S, -26L, H35L, L38P, V39S; pro: Y67C; rev: T18A, L55I, I63F, S84G, G104E; tat: D64S, S84P; vif: K36N, K176Q; vpr: Q3P, Y45H; vpu: I13V, F30I"}}},{"name":"KY216147","node_attrs":{"div":0.18667999999999998,"accession":"KY216147","clade_membership":{"value":"CRF79_0107"},"country":{"value":"CN"},"date":{"value":2015.0},"Strain_name":{"value":"SX15JC06"},"LANL_subtype":{"value":"CRF79_0107"}},"branch_attrs":{"mutations":{"nuc":["G310A","G425A","T494C","T506C","G579A","G581A","G761A","G803A","C884T","T1117C","C1211T","A1253G","A1442C","A1619G","G1646C","A1700G","C1721T","G1727A","C1755T","G1760A","C1783A","C1792T","A2012G","G2219A","G2398A","A2403G","C2521T","G2764A","A2884G","A2995G","T3045C","A3094G","A3249C","T3399C","A3430T","G3435A","G3448A","C3628T","G3816A","T3850A","A3907G","G3997A","A4686G","G4727A","C4992T","A5061C","A5065G","T5102C","T5147C","A5154C","G5236A","C5239T","A5246T","A5278G","T5286C","T5292C","C5425A","C5599A","A5603-","C5692G","A5695T","A5745C","C5826T","G5845A","A5848G","A5907G","A6061G","G6121A","A6137G","G6174A","G6189A","C6190T","G6201A","T6210G","-6211T","T6213C","A6214C","A6215T","G6217T","C6220G","-6225A","-6226G","C6241T","A6251G","A6327T","T6345G","G6397A","A6425G","C6441T","T6454C","T6460C","G6465A","G6489A","A6584G","C6612T","T6676C","T6778A","C6790T","A6797C","A6798T","T6802G","T6808C","C6829T","C6830A","C6831G","A6832C","A6834G","T6835C","-6836G","-6837C","-6838T","A6842G","C6843A","A6845C","C6855A","A6947T","G6948A","-6957A","T6958G","A6960C","G6962A","G6963A","A6965G","C6966A","A6967T","T6968A","-6969G","-6972G","-6973G","-6975C","-6977A","-6979T","T6986A","A6990C","-6991A","-6992G","-6993C","-6995G","-6996A","-6997G","-6998G","-6999A","-7000T","-7001A","-7002C","-7004A","-7005A","C7006T","A7007T","C7009G","A7036G","A7065G","T7114C","A7149C","T7150A","A7161G","G7199A","C7684T","A7689C","A7801T","C7938A","T8112G","G8133A","G8241A","A8263G","A8349G","G8388A","A8469G","T8505A","G8510A","C8568T","A8693G","C8715G","A8717C","A8746T","G8794A","A8844G","G8888A","G8914A","T8923G","G9019T","C9023T","T9072C","T9074G","T9078C","C9108-","-9109T"],"INT":["R14K","D25E"],"RT-p51":["E42K","K103R","V317A","K385T","V435A"],"RT-p66":["E42K","K103R","V317A","K385T","V435A","S447N"],"gp120":["K18R","T95A","N117S","-118T","-119Y","-120G","T133A","D157N","N158-","N159-","S160-","S161-","E162S","I164R","T191A","A196V","R204K","R212H","I244V","A253V","N308K","N315L","N316K","P326S","N327S","-328A","T330E","I331L","T334E","S365Y","-370S","-372V","K404R","N432T","N433K","N436S","D449N"],"gp41":["N109K","D129A","T212N","P219L","V270G","R277N","G313E"],"nef":["V16I","I43V","C55S","Q125D","Y135F","R151K","M168V","M182I","R191H","M194R"],"p17":["V82I"],"p24":["I129T"],"p6":["P25L"],"pro":["I72V"],"rev":["D30E","S88R"],"tat":["Q17K","P77T"],"vif":["K34E","P136S","N140H","I159L","K160R","N190H"],"vpr":["F15L","E17A","N48Y","I61T","M63T"],"vpu":["Q29E","D80N","N81D"]},"labels":{"aa":"INT: 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E63D"}}},{"name":"DQ354120","node_attrs":{"div":0.16099999999999998,"accession":"DQ354120","clade_membership":{"value":"CRF15_01B"},"country":{"value":"TH"},"date":{"value":1996.0},"Strain_name":{"value":"M169"},"LANL_subtype":{"value":"CRF15_01B"}},"branch_attrs":{"mutations":{"nuc":["G361C","A513C","A557G","C583T","A619G","A647G","G696A","G803A","G821A","T827C","T858C","A944T","A968C","C1040T","G1090A","G1139A","A1176G","T1182C","A1359T","A1412G","A1442C","A1448G","G1452A","G1586A","C1610T","C1615A","A1656C","A1691G","C1741T","A1742G","C1753T","T1756C","T1792C","T2035C","G2215A","G2222A","T2425C","C2485T","A2592G","G2682A","A2710G","G2909C","A2915G","C2968A","G2984A","A2986G","A3007T","C3129A","A3218G","C3285T","T3358C","A3502C","T3517C","G3538A","A3866G","A3868G","C4076A","G4078A","T4129G","T4135C","A4333G","A4492C","G4616A","T4667C","G4677A","T4702C","C4728A","T4776A","C4826T","A4863C","G4870A","T4883C","C4937A","C5149T","G5179A","A5247C","C5306T","G5382C","C5482T","T5636C","C5658T","T5659G","T5660C","T5688A","A5689T","T5695G","G5711A","A5760G","T5851C","T5878C","G5963A","T5964C","T6151C","A6173G","-6175A","A6180C","A6192G","-6196T","-6200A","-6201C","-6202T","-6204C","-6207G","-6208T","T6210G","-6211T","A6212C","T6213C","A6214G","A6215C","G6222A","G6224A","A6248G","T6250C","G6261C","A6265G","A6268T","A6332G","A6354G","C6412A","G6430T","C6446A","A6465G","T6541C","C6607T","G6617A","A6639T","A6695C","C6708A","C6758T","C6767A","T6772C","A6803G","G6806A","-6835C","A6859C","-6957A","A6960C","A6965G","-6986A","A6989T","C7014G","G7040A","A7095T","C7156G","A7160-","A7161-","C7162-","G7182C","A7269G","G7291A","G7440A","C7486T","C7489T","T7622A","T7626A","G7627T","G7633C","G7640A","G7677A","T7775C","G7790A","A7791G","A7796T","A7818G","G7835A","A7847G","C7926-","C7927-","C7928-","C7929-","T7930-","A7935C","C7937A","A7938C","G7939C","C7951A","G8017C","A8050G","G8052A","C8080A","G8137T","A8143G","A8248G","G8255A","A8260T","A8282G","G8335A","C8336G","G8388A","A8407G","G8421A","T8505A","T8582A","T8584A","A8617G","A8657G","A8717C","A8917C","T8923G","C8928A"],"INT":["I31V","L101I","V281M"],"RT-p51":["E43K","K166R","G196E","A272P","I274V","D291E","E297K","P345Q","I375V","T397I"],"RT-p66":["E43K","K166R","G196E","A272P","I274V","D291E","E297K","P345Q","I375V","T397I"],"gp120":["V37T","-107E","N109A","T110N","N113S","-116P","-117L","-123E","G124R","N132D","S136T","I137M","K138N","N160D","N167S","L198I","K204R","V255I","E262V","I281L","P285Q","H302Y","L305I","K315R","I317V","Q335H","-368N","N369G","-374T","-375S","-376A","-377W","-379Y","-381T","-382E","-383N","T387R","V396I","Q414L","N434T","T437-","G443A","K472R"],"gp41":["R46K","M54L","S107T","L108H","N109D","E110D","D113N","S125D","D163S","T165S","K172R","V178I","I182V","T208I","P209-","S210-","H211P","Q212T","Q213H","R250Q","V318I","R327G","L345V"],"nef":["V16I","K21R","Q22R","A27T","C55S","Q61H","F81Y","K92R","Q125H","I173L","K192T","I194R"],"p1":["N9H"],"p17":["S9T","I60L","A83V","K95R","I104M","G121S"],"p2":["A7H","Q8T"],"p24":["E71D","S120N","S149G","T210S"],"p6":["T21M","L38S"],"p7":["T50N"],"rev":["E57Q","T68A","L78I","V97L","R99G"],"tat":["E2D","P73S","N80G","P81N"],"vif":["F39S","H48N","L64I","N93Q","S95N","D117E","T188I"],"vpr":["N48T","A93P"],"vpu":["V10A","L18A","I28L","Y30V","R35K"]},"labels":{"aa":"INT: 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I28L, Y30V, R35K"}}}]},{"name":"CRF15_01B_NODE_0000006","node_attrs":{"div":0.13968999999999998,"clade_membership":{"value":"CRF15_01B"}},"branch_attrs":{"mutations":{"nuc":["G425A","G428A","G821A","-1752T","C1783A","T1986C","C2353T","A2566G","A2808G","G3001A","A4864G","C5250A","C5653A","C5707T","G5711A","C5866A","T5878C","T5884C","C6025A","-6175G","-6211G","A6311G","G6806A","A7005G","A7032G","T7579C","A7885G","T8182C","G8349A","G8404A","T8505A","G8558A","A8981G"],"RT-p51":["K238R"],"RT-p66":["K238R"],"gp120":["M126I","I153V","-371T","K393R","N434T"],"gp41":["M54L","L340F"],"nef":["G3S"],"p17":["M31L"],"p2":["Q6H"],"p6":["P25L","P35H"],"pro":["L63P"],"rev":["H82S","S112P"],"vpr":["T49N"],"vpu":["L16I","R35K"]},"labels":{"aa":"RT-p51: K238R; RT-p66: K238R; gp120: M126I, I153V, -371T, K393R, N434T; gp41: M54L, L340F; nef: G3S; p17: M31L; p2: Q6H; p6: P25L, P35H; pro: L63P; rev: H82S, S112P; vpr: T49N; vpu: L16I, 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V31I, V32I, A124G, K160R, T218S; RT-p51: S123D, I135R, A286T, D291E, I292V, P294A, E297T, T377L, S379C; RT-p66: S123D, I135R, A286T, D291E, I292V, P294A, E297T, T377L, S379C, R461K, H483Y, E514D, V517I; gp120: D4N, A37M, N102D, N108K, T110G, -113T, -114D, -123T, -124D, M133V, R138N, K150R, Q155H, N159S, N160S, S161E, S162K, D251N, I279M, Q287R, G307Q, K309N, N311Y, K315R, A318T, K322E, N327-, I331V, I332V, N349T, K361N, S365N, -367C, -368L, -369N, -370E, -371T, -372K, -373E, -376C, -377N, -379I, -381K, R391K, I396V, M398L, T414R, N432I, N435A, I463L, K474R; gp41: M54L, A96N, I118V, E133A, N160S, D163S, M176I, R221G, L265S, A267V, A268T, W285C, D305N, V321I, A322V, A325T; nef: S9M, V10A, V33A, K39R, A50E, D54A, L58V; p1: N9H; p17: M31L, L34I, A54T, L75V, T84V, K103R; p24: I2L, Q4R, A6V, V83I, M96L, S149G, T178S; p6: T8S, I21M, L25M, K33R, P38L; pro: L10I; rev: R14A, I18T, K39R, I55L, T62S, S86N, V104L; tat: N12K, T19A, K24N, K29R, C31S, L36I, Q60R, S61R, N67D, K71E; vif: Y30H, H80Q, R92K, I93T, K122E, I124T, V128I, R131S; vpr: N28S, I61M, I84L, P85R; vpu: L4F, E29Q, F30I, R31K, R35Q, V43I"}}},{"name":"CRF52_01B_NODE_0000001","node_attrs":{"div":0.13178999999999996,"clade_membership":{"value":"CRF52_01B"}},"branch_attrs":{"mutations":{"nuc":["C426A","T774G","A1841G","C2485T","A2808G","G3491A","T3779C","A4650C","T4701G","A5159G","C5250A","T5636C","G5907A","T5964C","A6186T","G6323A","G6392A","-6833A","-6834A","-6974A","-6976A","G7132A","C7463A","T7843C","C7929T","T8047C","G8107A","C8112T","A8151G","-8492T"],"RT-p51":["K211R","K238R"],"RT-p66":["K211R","K238R","V466I"],"gp120":["R18K","E125-","D157N","V180I"],"gp41":["P209L","T270I","K283R"],"p24":["L15V"],"p6":["V39S"],"pro":["I15V"],"rev":["S67P","E87K"],"tat":["K29I","L74F"],"vif":["N22H","F39V"],"vpr":["T19A","T49N"],"vpu":["V10A"]},"labels":{"aa":"RT-p51: K211R, K238R; RT-p66: K211R, K238R, V466I; gp120: R18K, E125-, D157N, V180I; gp41: P209L, T270I, K283R; p24: L15V; p6: V39S; pro: I15V; rev: S67P, E87K; tat: K29I, L74F; vif: N22H, F39V; vpr: T19A, T49N; vpu: V10A"}},"children":[{"name":"DQ366664","node_attrs":{"div":0.15575999999999995,"accession":"DQ366664","clade_membership":{"value":"CRF52_01B"},"country":{"value":"MY"},"date":{"value":2003.0},"Strain_name":{"value":"03MYKL018_1"},"LANL_subtype":{"value":"CRF52_01B"}},"branch_attrs":{"mutations":{"nuc":["A303T","T357C","T571A","C583T","G585A","A605G","G614T","A647G","T655C","C669A","C672T","A674C","G706A","A716G","A975C","G1127A","C1136A","A1253G","A1350T","A1355T","T1451A","G1452C","C1453A","A1454T","A1456C","T1457A","-1458A","-1459A","-1460T","A1492C","G1493A","T1574C","A1580G","A1587C","T1616G","G1661A","A1691G","A1772G","A1781T","A1783C","A1819G","C1831T","A1857G","G1963A","T2071C","C2199T","G2350C","A2371G","T2453C","A2498G","A2510G","C2944T","A2969G","C3129A","A3136G","G3169A","G3173T","A3217G","A3292T","T3303C","T3346C","T3505A","A3521C","C3550A","G3667A","C3712T","A3836G","G3869A","C3991T","A4333G","T4656G","A4677G","A4688G","A4782G","A4860G","A4863C","T4932G","G4978A","G4982A","T5084C","A5093G","G5128A","G5131A","A5142C","C5146A","T5182C","C5222T","A5247C","T5293C","A5345G","T5356C","G5385A","A5446T","A5447C","C5482T","T5515C","A5581G","A5587G","A5611C","C5612A","G5619A","A5644G","G5699A","A5720G","G5739A","T5797-","T5798-","G5799-","G5800T","C5801T","C5802G","A5803G","A5804C","A5805C","C5806A","T5807C","T5808A","-5809C","-5810T","-5811T","C5866A","T6046C","C6067A","T6072C","T6134C","C6148T","-6170G","T6171C","-6172T","C6175A","G6179A","T6181A","A6191T","A6192C","G6194A","G6195A","C6196A","-6198C","T6199A","-6201T","-6202A","A6203G","-6205A","A6208T","A6209C","-6211A","-6213C","A6221-","A6223-","A6249G","A6266C","G6267A","A6268G","A6273G","G6284A","T6289G","T6322G","A6327G","G6336A","A6339G","-6340T","G6376A","T6446C","C6599A","C6607T","G6611A","A6649G","A6692G","C6693G","-6697G","A6703-","A6714G","A6723T","C6736A","A6759T","C6792T","C6807A","T6808G","-6835T","A6848G","T6849A","T6888C","G6889A","A6935C","A6936T","G6948A","C6951A","-6955C","-6975C","G6979A","G6980A","-6982T","T6983G","T6985A","A6987C","A6990G","C6991G","-6994G","-6995G","-6996G","-6997G","-6998T","-6999G","-7000T","-7001A","-7002A","-7003T","-7004G","-7005A","C7006A","A7057T","C7084T","A7095T","G7106A","A7138C","G7146A","T7150A","A7152G","T7156A","C7158A","A7160G","T7162C","A7164G","C7170T","A7195G","A7265T","G7269A","A7373C","T7466C","G7534A","C7597T","T7625C","A7630T","C7645G","G7655A","G7658C","A7688G","C7691A","A7703C","A7742C","G7744A","T7747G","T7774C","T7825C","A7996C","A8029T","C8038G","G8070T","T8138G","A8150C","G8255A","C8268T","C8323A","G8370-","T8371-","G8372-","A8386G","A8413G","T8440C","A8458G","A8494C","C8503A","A8540G","C8543T","G8588A","T8594C","T8603C","A8617G","C8675T","A8827G","G8846A","A8859C","T8860A","G8861A","A8874G","A8917C","A9042G","A9135G"],"INT":["T21A","V32I"],"RT-p51":["T35I","Q85H","I135V","T139A","I292V","P345Q","A360S","E399D","M403T"],"RT-p66":["T35I","Q85H","I135V","T139A","I292V","P345Q","A360S","E399D","M403T","K476Q"],"gp120":["D4E","N71K","V73A","L106A","T107K","G109K","N111I","-113S","-114K","-115T","-116I","-118N","-120T","-121D","-122E","-123V","-124R","V126-","K127-","N132S","R138Q","K140R","V144I","H145Q","N158S","N160S","S161N","L249I","A253T","T280G","I281M","Q287R","Y290F","D294E","Y302F","A318K","I332D","M345T","K361L","S365N","T366N","-367C","-374T","-376N","-377E","N378T","-379G","-381G","-382C","-383N","-384E","A402V","T414I","V418I","R428S","G431D","N432K","N433S","N434K","T436D","N437S","T439I","I447M","T471S","R472K"],"gp41":["I24L","Y108H","E109D","N114K","E119Q","N129D","Q130K","I134L","K147Q","D148E","R231S","L242F","S256L","W279G","V318I","A322V","F340L"],"nef":["V10-","E24G","V33A","K39R","N51T","K92R","N162S","M168I","M173Q","R178G","K192T"],"p17":["P66S","F79Y","A83V","E93D","I104M","V107A","Q112K","Q113Y","S124N"],"p2":["H9Q","-10H"],"p24":["T207S"],"p6":["E34D","H35P","N47S","S51L"],"p7":["Q9P","K41Q"],"pro":["K20R"],"rev":["S61C","L64V","Q74P","V97G","Q101P"],"tat":["K24S","Y47H","I69V","K71E"],"vif":["L24V","I31V","I66V","R92G","I93L","S116A","R131H","R181K","G182D","N186H","P187H"],"vpr":["E13A","H40Y","N48T","I84T","G94S"],"vpu":["T2Q","I13V","R31K","K38R","K66T"]},"labels":{"aa":"INT: 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K24S, Y47H, I69V, K71E; vif: L24V, I31V, I66V, R92G, I93L, S116A, R131H, R181K, G182D, N186H, P187H; vpr: E13A, H40Y, N48T, I84T, G94S; vpu: T2Q, I13V, R31K, K38R, K66T"}}},{"name":"DQ354113","node_attrs":{"div":0.15212999999999996,"accession":"DQ354113","clade_membership":{"value":"CRF52_01B"},"country":{"value":"TH"},"date":{"value":1996.0},"Strain_name":{"value":"M043"},"LANL_subtype":{"value":"CRF52_01B"}},"branch_attrs":{"mutations":{"nuc":["T372C","T479C","T531C","T596C","G608A","T635C","G697A","A715C","A724G","G762A","T763C","C947T","A989C","A1208G","G1232A","G1388A","G1508A","A1664G","G1670A","A1694G","G1739-","A1740-","T1741-","C1744T","C1745A","-1746A","-1747C","-1748C","T1752G","C1753T","A1754T","T1796C","A2075C","T2116G","A2127C","A2154G","A2210T","C2211T","G2380A","A2599G","A2614G","G2878A","C2910G","C2960T","G3071A","A3124G","A3151G","G3221T","A3230G","G3340A","A3474G","T3545C","C3600T","C3628T","A3637G","C3649A","A3682T","G3685A","T3778C","A3845G","A3868G","G3877A","G3878C","G3891A","C4009T","T4126C","G4145A","C4198T","G4264A","A4285G","A4384G","T4678C","C4728A","C4761A","T4772C","C4937A","G4975T","A4987G","A5005G","G5176A","C5242T","G5279A","T5293G","C5384T","G5493A","C5511T","A5548C","G5561A","T5568G","A5607T","A5611T","G5620A","A5621C","T5708A","G5711A","C5727T","G5791A","G5839A","A6164-","C6165-","C6166-","A6167-","A6168-","T6169-","T6171-","A6180C","A6185T","T6187G","-6198A","-6201A","-6202C","-6205T","A6207G","T6210G","-6211G","-6213A","-6215T","-6216T","-6217T","-6218A","-6219A","-6220C","-6222G","A6225G","T6226A","G6227-","A6228-","C6263A","T6328G","T6331C","G6333A","A6338G","-6340G","A6375G","G6481A","A6574T","A6581G","G6605A","C6612T","T6745C","A6748T","A6767G","A6806G","A6810G","-6835A","T6896G","C6951T","T6953-","G6954-","-6964C","-6965A","-6966C","-6967A","-6968T","-6969G","-6970G","-6971A","-6972C","-6973T","-6975T","A6981G","-6982A","T7018G","G7026A","T7059C","A7085G","A7095C","G7106T","A7148G","A7149C","A7154G","T7159G","A7160C","T7162A","A7249G","A7322G","A7541C","A7626T","G7640A","T7656C","G7702T","G7857A","A7885G","A7891G","T7920C","C7926T","C8005A","C8069A","C8103T","G8105A","T8215C","G8216A","A8219G","C8220T","T8221C","T8281C","C8294A","G8349A","-8373G","-8374T","-8375T","G8387T","C8406A","A8438G","A8465G","G8490A","A8536G","A8656G","G8666C","C8688A","A8793G","A8824C","T8887G","G8888A","A8892C","T8947A","C9023T","A9026G","C9129T"],"INT":["S24G","E35Q","S39N","A124T","I203M"],"RT-p51":["K11T","K20R","T39L","A272G","V326I","A376S","S379G"],"RT-p66":["K11T","K20R","T39L","A272G","V326I","A376S","S379G","N460S","A502V","E529D"],"gp120":["T104N","T110N","-113P","-114T","-115G","-116P","K127R","L137I","M156I","N158K","S162E","K174R","E240D","I243V","D251N","A253V","I305V","V313A","K319G","-326K","N328-","F348V","-376G","-377Y","-379D","R391K","I411V","V418L","N432A","N434D","N435T","T436Q"],"gp41":["M7V","K80Q","Y108F","D113N","I118A","E133D","R185K","F206S","T208I","A267V","A268T","D305N","T306V","H331N"],"nef":["G3S","-11V","R15N","A50T","D54A","E65G","K105R","E108D","H116N","K151E","N161T","M182R","K184Q","F202Y"],"p17":["T84A","G121D","K127T","Q130R"],"p24":["V11T"],"p6":["S24V"],"pro":["I93L"],"rev":["E11D","V16I","I18S","R53S","S86N"],"tat":["P3L","T58P","S62N","D64E","P73S"],"vif":["I31T","H48N","L59I","D117E","R130I","E134G","N140S"],"vpr":["A59T","I63M","I84M"],"vpu":["T2S","E5T","L34Q","R35K","D62N","V78I"]},"labels":{"aa":"INT: 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L74I, V165I, K215N, D279G, G283S; RT-p51: V8I, E44G, E169D, G196E, Q207T, T312N, Q334H, R366K, T403A; RT-p66: V8I, E44G, E169D, G196E, Q207T, T312N, Q334H, R366K, T403A, L469I, L479F, H480Q, S491P, E514D, E516A; gp120: H33Q, E34D, T35P, P57L, L58M, N66D, N102D, T104S, D105A, -109V, -111L, -112T, -113N, -114S, -115T, -116Y, -117P, -118T, -119N, -120A, -121P, -122E, -123K, -124I, K140R, K141E, Q142K, Q155E, D157E, N158G, N160S, K174R, V180M, I197M, F205V, E262S, I266V, I279V, H280S, T313K, H324K, I332K, H346L, -368P, -376G, -377N, N378E, -380I, -381T, -382G, -383S, -384G, V396I, G401E, V402T, N414H, V418A, N437T; gp41: M54L, V69I, K77R, F81L, I91T, Y108F, N113E, E119Q, N140I, D148E, A156T, D163N, T165S, N166K, F188S, D232G, R233K, V235I, H258R, L264G, I290A, A306T; nef: S8N, S9K, E63D, C163S, E174D, E176D, E197Q; p17: V7I, K18R, K26R, M61I, S66P, T67A, T81L, R91K, S124K, N125-, S126-, K127-; p2: Q6H, T8Q, N9G, -11A, -12G; p24: L15I, E71D, E79D, P123A, A204S, T210S; p6: G18E, S24P, K31I, P37-, P38-, I39-; pro: K45R, K70R; rev: K20R, Y28E, K39R, R53H, A54T, T62A, T82R, D108G, K115E; tat: A21P, P59S, S62C, L74R; vif: I9V, V31I, S39F, R41K, R67K, H80Q, N95S, D117E, S137A, K167R, N190H; vpr: A4T, N28A, E58V, I84L; vpu: T2S, V21I, K35R, R37K, K38R, V43I, R47E, D69N"}}},{"name":"CRF100_01C_NODE_0000001","node_attrs":{"div":0.14014,"clade_membership":{"value":"CRF100_01C"}},"branch_attrs":{"mutations":{"nuc":["A3120T","T7159A","G7702C","G8253C","T9097G"],"RT-p51":["Y342F"],"RT-p66":["Y342F"],"gp120":["H259Q"],"gp41":["R317T"],"nef":["I133T"],"vif":["R131H"]},"labels":{"aa":"RT-p51: Y342F; RT-p66: Y342F; gp120: H259Q; gp41: R317T; nef: I133T; vif: 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E11D, R14K, T218S; RT-p51: V8I, E36K, I173V, C280R, K311Q, T312N, R356K, R366K, K374R; RT-p66: V8I, E36K, I173V, C280R, K311Q, T312N, R356K, R366K, K374R; gp120: D21E, E34V, A37V, E59K, D79G, K89Q, D105N, -106L, -107G, -109R, -111D, M133I, K141Q, Q142K, I153L, D157E, N158S, N160S, N167K, T170A, E265K, R291K, D294A, I305V, T308A, E312K, S319D, K322R, N327-, K329G, K361N, -368R, -369R, -370N, -371E, -372S, -373I, -374T, -375D, -376D, -377S, N379K, -380N, T385-, P389T, A405T, N416S, N420D, N433T, N435T, N436G, I463L; gp41: A6T, K80R, F81L, I118V, N129T, S157N, V178A, A189T, G200E, P209L, N210T, P219L, G221R, A245L, L265S, I298T, T307S, A343S; nef: R22Q, K32Q, V70I, G83A, Y120F, K151R, V153A, D156N, N157S, G159D, N162S, E176D, S188A, E197D, Y203F; p17: K32E, V46I, V82I, E93D, I107M; p2: Q6N; p24: L15V, V83L, H84N, E98D, E128D, S146C, S149G, R154K, T178S; p6: M21I, T22-, P30Q, -32D, -33H, -34P, -35P, P38S; p7: Q9P; pro: E16A, Q61E, L63C, E65G; rev: K20R, R53S, I55L, C63F, S106P; tat: T24K, 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R41K"}}},{"name":"MH909570","node_attrs":{"div":0.16357999999999998,"accession":"MH909570","clade_membership":{"value":"CRF100_01C"},"country":{"value":"CN"},"date":{"value":2013.0},"Strain_name":{"value":"YNLC30"},"LANL_subtype":{"value":"CRF100_01C"}},"branch_attrs":{"mutations":{"nuc":["G354A","A426C","A492T","A503G","G524A","A534T","A569G","G579A","G614A","A715C","T861G","A873T","A878T","C879G","A880G","A881T","A1017C","G1022A","C1115A","G1127A","C1136T","C1137T","G1298A","C1385T","G1415A","T1421C","C1442A","G1452A","A1538G","A1657G","G1734-","A1735-","G1736-","A1740G","T1741A","C1744T","C1745G","-1746A","-1747C","-1748C","C1752T","A1771G","T1791G","A2012G","T2041C","A2149G","C2236T","G2248A","C2453T","C2499T","G2507A","T2527C","T2613C","C2714G","A2734G","A2752G","T2770C","C2890T","T2935C","C2942A","G2951A","C2960T","C3023T","A3136G","C3160A","C3222T","A3251C","C3266T","C3500T","C3541T","G3685A","C3712T","G3769A","G3787A","A3880G","T4126C","T4153C","C4210T","T4234C","G4243A","C4396T","A4528C","A4567G","G4573A","A4656C","A4696G","A4751G","G4769A","G4870A","C4937A","G4978A","A5045G","G5131A","T5237C","G5246A","A5247G","T5260C","T5355A","C5397T","G5418A","G5444A","T5451C","A5462T","A5482T","T5515C","G5556C","G5574A","A5576T","T5577A","A5581G","G5635A","T5636C","A5640G","G5699A","G5711A","C5727T","C5731T","A5805G","T5899A","A6001T","A6030T","A6094G","A6158C","G6167-","A6168-","T6169-","A6187G","A6194G","A6201C","-6202C","-6203G","G6205C","A6207C","A6208C","T6217G","G6253A","C6263A","G6280A","C6286A","C6317A","A6320C","G6327A","A6330G","G6336A","A6338G","A6443C","T6460G","A6471C","A6476G","C6477A","C6482A","A6553G","C6631A","T6641C","A6686-","G6687-","T6688-","A6689-","T6690-","A6691-","A6692G","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","C6721T","A6774G","G6821A","-6833A","-6834A","-6835T","C6861A","A6900T","A6932T","-6972G","-6973T","-6974A","-6975G","-6976G","-6977A","-6978G","G6980T","-6985A","A6986C","-6994G","-6995T","-6996A","-6997A","-6998G","-6999G","-7000C","-7001A","-7002A","-7003T","-7004G","-7005A","C7024T","C7084T","T7090A","T7102G","G7123A","C7165T","A7269G","A7322T","G7366A","A7373G","A7375G","C7544T","A7633T","G7640A","T7656C","T7681C","C7691A","A7692T","G7701A","G7717A","A7753G","A7820T","T7843C","T7913C","T7930G","C7932A","A7962G","C7984A","T8047C","G8110A","T8113G","A8128C","C8129A","C8131G","A8132C","T8167G","A8204G","G8216A","G8219A","G8239A","G8241A","C8321T","A8329G","C8369T","G8388A","T8414C","A8531C","A8643G","G8738A","G8762A","C8789T","G8794A","G8818C","A8823G","A8827C","A8837G","G8888A","C8917T","C8948T","A8969C","A8970G","A8980G","T9012C","G9016T","G9132A"],"RT-p51":["T135I","E138K","I173A","Q207E","L283I","A286T","T297A","A376V","T386P"],"RT-p66":["T135I","E138K","I173A","Q207E","L283I","A286T","T297A","A376V","T386P"],"gp120":["E59V","N102H","N108-","T110-","M133I","L137I","Q155K","I156L","N159R","S161N","K162N","V180I","I197L","D202E","N206T","T208E","P210T","S263P","S278G","E307G","E323K","P336H","N349I","T360S","-384D","S412R","N416K","V432D","N435T","K472R"],"gp41":["M7L","I24V","M54L","Y108F","E110D","I118T","Q130I","G133D","I173L","E220G","A245V","I301V","D305N","A306T","G313E"],"nef":["V16I","T56A","E63D","I101V","G159A","N161D","N162T","M182I","T192I"],"p1":["N9S"],"p17":["V7I","M31L","T53S","T67S","V82I","K127T"],"p24":["S44A","T48S","Q50G","M96L"],"p6":["K31-","P38A"],"pro":["I72V"],"rev":["R14T","I21Y","Y28E","K39R","S67P","D88N","C89G","T94Q","Q95G","S107A"],"tat":["S23N","K29I","I36L","Y47H","Q60H","N67I","I69V","L74R","K85E"],"vif":["I24L","K37R","D117E","G182D","N190H"],"vpr":["Y45H","D48S"],"vpu":["V10T"]},"labels":{"aa":"RT-p51: 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K20R, D35E, L63V, I93L; rev: E6D, T8A, F21L, T25S, R53H, A54T, E57D, L83I, C85S; tat: I19R, A21E, Y47H, K53Q, H54R, I67A, L69I, N71K, G79R, E85K; vif: M29I, Y30H, E37K, S137A, K176E, G182D, T188I, H192Q; vpr: Q3R, L20I, G41S, I46V; vpu: T2N, P3S, L18A, R31M, -68L, V69-, 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S39T; RT-p51: V142I, A376S; RT-p66: V142I, A376S, R463K; gp120: D4E, -113N, K140R, K141Q, Y145Q, K201N, D202E, S308N, G361L, T385-, V432T; gp41: Q80R, D113G, E119Q, S157N, G226D, L288I; nef: R21K, N49D, D156E, N161D, N162R, I168M; p17: M104L, K109S; p2: A10T; p24: A78V; pro: K20I, K70R; rev: P72S, L73F, R80G, S106Y; vpr: 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V31I, V135I, K215T, D279E; RT-p51: R20K, G51R, G190R, G196R, G231R, V276I, G316R, Q367P; RT-p66: R20K, G51R, G190R, G196R, G231R, V276I, G316R, Q367P; gp120: E59G, N107-, -109D, T112A, -114I, -115S, V126I, M133V, T134D, D139G, Q145R, A146T, K150T, N158K, N159S, N160D, S161T, K212R, K224M, E265A, H302Y, N308E, N311K, Q315H, E322Q, I332R, A334E, P341L, T359G, S360T, L361F, S365G, -368N, -373S, -374T, -375G, -376T, -377H, -379K, -381E, -382N, T416Q, K418N, N420S, N435T, T436E, N437S; gp41: I135L, N160T, K172R, S210T, R214G, D232N, C256S, G286W, L290I, L304F, V311I; nef: T23A, M48I, V56A, E64D, Y81F, H116N, I133T, Y135F, Q198L; p17: I60L, V82I, V83A; p24: E71D, I83M, G89R, G137R, R203K, P207T, G208E, R229K; p6: G16R, G18R, K33E, S51P; p7: G40R; pro: V11A, I64M, G68R; rev: F28Y, E32G, R50K, A54T, I55L, R58W, L74Q, G104V, A108D; tat: S16-, I19-, Y47H, K63E; vif: R4K, I9S, I98V, S165C; vpr: N28I, D48E, I63T; vpu: L16I, C30Y, R31K, R41K, R47G"}}},{"name":"MT624755","node_attrs":{"div":0.18392999999999998,"accession":"MT624755","clade_membership":{"value":"CRF111_01C"},"country":{"value":"CN"},"date":{"value":2016.0},"Strain_name":{"value":"16YN732"},"LANL_subtype":{"value":"CRF111_01C"}},"branch_attrs":{"mutations":{"nuc":["A265C","T396C","A417C","A543G","A674C","A675-","A676-","G677-","C679-","A680-","A776T","A1002T","A1134G","G1298A","G1313A","A1346G","G1354C","T1358C","A1463G","G1474A","G1661A","A1754G","A1900G","T2146C","A2612G","T2613A","A2618C","C2749T","G2932A","A2937G","C3180G","A3214G","G3398A","C3449A","A3454G","C3688T","G3952A","C4234T","C4288T","A4787G","G4978A","A5059C","G5065A","C5239T","A5240G","C5438A","G5565A","A5575T","T5686C","A5737G","A6001C","A6019G","A6024G","G6085T","G6088A","G6092A","A6112G","A6158C","T6160G","T6170G","T6171C","G6172T","A6177G","T6181G","A6192G","A6194T","A6203T","A6204C","T6213G","C6222A","A6323C","A6324C","T6325A","A6333G","G6425A","T6446A","A6573G","A6583G","G6626A","A6639G","A6649T","A6668G","A6669G","A6715G","G6773A","A6774G","A6800G","T6876C","G6936T","C6951T","T6953G","A6954G","G6962A","A6987-","T6991C","-6994T","-6995G","-6996G","-6997T","-6998A","-6999C","-7000A","-7001G","-7002G","-7003A","A7007-","C7009-","T7114C","T7144G","T7153C","A7155C","T7156C","T7159C","A7162C","A7164C","G7269A","T7321C","C7597T","A7630T","C7651T","T7675C","A7717G","A7799C","G7873A","T7919C","G8017C","A8018G","C8020G","G8137A","A8222G","A8228G","G8274C","A8288C","T8334G","C8460T","T8485G","-8488C","-8489A","A8496-","A8497-","T8498-","G8499-","C8500-","T8501-","G8502-","A8503-","T8504-","A8505-","G8506-","T8507-","G8508-","C8510-","T8511-","G8512-","G8513-","T8514-","T8515-","G8516-","A8517C","G8518A","C8521A","A8522G","C8523G","G8526A","G8528T","T8640C","A8652G","C8661A","G8868A","A8873G","T9019C","T9040A","A9042-"],"RT-p51":["I173E","N175H","K281R","T362S","V435M"],"RT-p66":["I173E","N175H","K281R","T362S","V435M","L452I"],"gp120":["H57R","Q77H","V80I","N102Q","N107S","-109A","T110S","N111S","-114S","-115T","-116I","-117G","-118N","-119I","-123K","-124D","N157P","N160S","S162N","A191T","L198I","E240G","I243M","V258I","Q262R","E265D","N272G","E307R","N316D","T366I","Y367G","-369N","-370S","-371T","-372Y","-373N","-374G","-375T","-376G","-377D","N378-","T380-","T432N","N433D","N437T","R472K"],"gp41":["E109D","N166H","F206L","N239E","T307V","I309V","R324T","I329L","L344W"],"nef":["H40Y","M48R","D49A","N52-","A53-","D54-","S55-","V56-","W57-","L58-","R59-","A60-","K104E","Q107K","E176K"],"p17":["K28Q","T70A","K114-","A115-"],"p2":["I13M"],"p24":["L15F","I91F","I135V","G208A"],"p7":["R3K"],"pro":["I93V"],"rev":["R17K","K20N","E57R","R58G","D86N","V97M"],"tat":["A21D","I67F"],"vif":["M29I","R131H","K158T","R160K"],"vpr":["I46V"],"vpu":["F27L","K44E"]},"labels":{"aa":"RT-p51: 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K44E"}}}]}]},{"name":"CRF111_01C_NODE_0000003","node_attrs":{"div":0.16457,"clade_membership":{"value":"CRF111_01C"}},"branch_attrs":{"mutations":{"nuc":["C179-","A180-","G181-","T182-","G183-","G184-","C185-","G186-","C187-","C188-","C189-","G190-","A191-","A192-","C193-","A194-","G195-","A215-","A216-","T1229C","A1448G","C1979G","A2273G","G3891A","A5462G","A5563G","-6174C","-6175C","T6181C","C6184T","C6205A","G6230-","A6947G","-6955C","A7148G","A7149T","T7919C","T8337A","A8739G","A8935G","A9065-"],"INT":["S39N"],"RT-p51":["I60V"],"RT-p66":["I60V"],"gp120":["-109I","N327-","S365G"],"gp41":["F206L","T307I","L345Q"],"nef":["M48L","Q198R"],"p17":["A115Q"],"pro":["Q61E"],"tat":["K63E"],"vpr":["G94S"]},"labels":{"aa":"INT: S39N; RT-p51: I60V; RT-p66: I60V; gp120: -109I, N327-, S365G; gp41: F206L, T307I, L345Q; nef: M48L, Q198R; p17: A115Q; pro: Q61E; tat: K63E; vpr: 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R136K, I203M, T206S, Q216H, N254K, S255G, I267V; RT-p51: P4H, D6E, K11T, S123T, I142V, I173A, A207K, A272G, A286T, E297V, T312N, D324E, L325I, V326I, V329I, I375V, T377M, T386V, R390K; RT-p66: P4H, D6E, K11T, S123T, I142V, I173A, A207K, A272G, A286T, E297V, T312N, D324E, L325I, V326I, V329I, I375V, T377M, T386V, R390K, H483Q, E524K, K527E; gp120: D4E, N5D, D21K, N52D, H57Y, L97I, D105N, -107K, -109L, M133V, R138W, K141Q, K143R, H145R, L151D, I153L, Q155S, I156L, N158D, S161T, S162E, S181T, D202N, D251N, V264I, N273K, T275I, I279V, H280R, Q287R, F289W, -291T, T292D, D294I, -295E, Y302F, I305V, T308A, E312K, A318V, K319A, K322R, L341P, H347S, K361A, -367W, -368N, -369I, -370S, -371T, I396V, M398L, K414V, I415V, V418R, I424L, N432R, -433D, T436E, M447I, R472K, K474R; gp41: I4L, S42G, A96T, T102S, E109Q, I118T, S125D, Q130L, E133D, I134L, E151A, A156T, N160S, T165S, K172R, V194I, F206V, P209L, T210P, H212Q, R214G, I222T, D232N, R233G, V235I, A243T, D247E, R259L, G286W, L290K, A306T, T307V, A310T, V318A, V321I, A325V; nef: S8R, I10T, V11A, P14T, R19Q, I20M, P25V, E28A, D54A, V56A, R71T, L76V, Y81F, G83A, S88G, I133T, F143Y, R151K, D156A, K158E, H171Q, E174D, R178G, S187T, A188S, K192R, I194L, Y202F; p17: K12Q, E42D, E55A, S66P, T67S, L68I, V82I, R91K, E93D, Q112K, G121S, G123K, K127Q; p2: A7V, N9Q, -10P, -11N; p24: V27I, E71D, E79D, V83T, V86I, I91F, D128E, Y169F; p6: A12L, N14S, W15L, M17I, S24F, -26Q, K27E, E29P, Q30P, K31-, D32-, K33-, E34-, H35-, P36-, P38S, P49L, S51L; p7: K7Q; pro: L10V, G16E, K20R, I72V; rev: I21L, Y28P, S30P, S31A, E32G, R50K, Q51R, R53H, A54S, I55L, S61N, R66G, S67P, Q95E, V97L, G104V, V108E; tat: P3L, N7K, K29V, K40N, G57R, T58G, P59T, N67T, L74S, I76T, I77S, S87Q; vif: R19K, K36Q, H48N, L59V, V65I, R67K, Q73H, R92K, N93T, Y94F, Q105R, Q110H, R131P, Y135F, S137T, K141Q, T154A, R160K, K167S, N186Y, *193W; vpr: E13V, N28L, Y45H; vpu: T2L, E5Q, S7C, A27I, R31K, V43I, K44E, R47S"}}},{"name":"MG989495","node_attrs":{"div":0.14165,"accession":"MG989495","clade_membership":{"value":"CRF01_AE"},"country":{"value":"TH"},"date":{"value":2011.0},"Strain_name":{"value":"2543513P000FL_Sj"},"LANL_subtype":{"value":"CRF01_AE"}},"branch_attrs":{"mutations":{"nuc":["G378C","C379A","T422C","T525C","C544T","T571A","G582A","A599G","A647G","G654A","T662G","C668T","G697C","A724T","T734C","C771T","G803A","G821A","C897T","C917T","C1040T","T1055C","G1109A","C1115T","A1124G","T1182C","C1220T","G1313A","T1335C","G1388A","T1484C","C1490G","C1491G","A1492G","G1493C","A1494C","A1495C","A1496G","G1498A","T1501G","T1502A","-1503A","-1504T","-1505T","T1583C","A1642G","A1656C","A1670G","A1709G","A1719G","T1729G","A1738G","A1772G","A1777G","A1783C","G1794A","G1835A","A1867G","C1960T","C1979G","T1986C","A2005G","T2011C","A2075C","T2083C","G2273A","A2341G","C2353T","A2404G","A2422G","T2440C","C2503T","G2539A","G2542A","G2578A","A2618T","G2656A","A2693G","A2698G","C2776T","A2827C","C2857T","T2935C","G3004A","A3025C","C3067T","A3361G","T3445C","G3477A","G3490A","G3538A","C3542T","A3651G","A3682C","C3734A","T3755A","G3772A","G3796A","T3799A","A3808T","T3857C","A3891G","A3985G","G4243A","C4381T","A4474C","A4498G","A4564G","C4576T","T4585C","G4637A","T4640C","C4652T","G4737A","C4757T","C4800T","G4805A","C4826T","A4847G","A4860G","A4865T","C4937A","A4951G","G4978A","T4991C","A5049G","G5059A","A5112G","G5128A","C5149T","A5159G","A5288G","T5294C","A5305G","G5312A","T5319A","A5431C","G5444A","A5447C","G5448A","T5515C","G5558A","A5575C","A5587G","C5612A","A5613C","C5658T","T5659G","T5660C","A5710C","G5712C","G5734C","C5756A","G5775A","T5808G","A5817G","A5848G","C5860T","T5861G","T5929C","A5955C","G5956A","C6004T","A6019G","A6024C","C6025A","A6031G","C6166T","A6168C","T6171A","-6172A","A6173T","-6174T","-6175G","T6181G","T6184C","T6187A","A6191G","-6198C","A6200G","T6213G","G6218A","A6219T","-6225A","-6226T","A6232G","T6242A","A6303T","C6318A","T6322G","T6328C","A6330G","T6334G","G6336A","A6338C","-6340G","A6349G","T6358C","A6462G","A6471C","C6482A","C6499T","G6566A","G6572-","A6573-","A6574-","A6589C","C6599A","T6637G","T6641C","A6648C","A6679G","A6686-","G6687-","T6688-","A6689-","T6690-","A6691-","A6692G","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","C6721A","G6732C","A6781G","A6797G","G6806A","C6807A","T6808G","G6821C","C6826A","T6827G","A6839C","A6859T","T6888C","A6932T","A6935C","T6943C","A6947T","G6948C","C6951-","T6952-","T6953-","G6954-","-6985A","-6986C","-6987A","-6988T","-6989A","-6990A","-6991C","-6993G","-6994A","-6995G","-6997A","C7016A","A7129G","A7148G","A7152G","A7158T","A7161C","A7186G","T7204C","C7264T","A7294G","G7508A","A7541C","T7575C","C7590A","C7603T","A7641G","C7642A","C7645T","A7655G","A7698T","A7711G","A7722T","G7744A","T7747C","G7750A","C7775T","T7825C","G7831A","G7841A","G7868A","C7932T","C7949A","C7984A","C8009A","A8032T","G8079A","C8103T","G8141A","C8146T","T8155C","T8196C","G8216A","A8273G","G8274C","G8330A","G8388A","A8407G","T8507G","G8554A","G8558A","C8640T","C8648T","A8656G","T8675C","A8678G","C8688A","T8711C","C8741T","G8868A","A8870C","T8923C","G8945A","C9039T","T9078C","T9097G","G9132A"],"INT":["E11D","N39S","D288N"],"RT-p51":["V60I","N175Y","T200A"],"RT-p66":["V60I","N175Y","T200A","R461K","H483Y","N519S","E529D","Q547K","S554T"],"gp120":["S3A","D21N","E34A","H57P","D105I","-107E","N108L","-109N","T110E","-111T","-112E","-113T","-114D","-115S","-116S","-117A","-118R","-119L","-120G","-121N","-122M","-123T","-124D","S130T","K150M","I156M","N159S","N160K","S161N","S162Q","K203R","N206T","P210T","A238T","E241I","I243-","R245S","L249I","N261K","S263P","E265A","S278G","V288A","F289I","Y290V","T292-","G293-","D294-","K315E","A318K","K319E","E323Q","H324Q","F325V","K329Q","M345T","T360S","K361Q","L388I","N432E","-433S","N435I"],"gp41":["M54L","V69I","K80Q","I91T","A96N","D113G","I118V","Y132F","N140I","M176I","G180S","A189T","T210I","P216T","R259H","A267V","R277Q","E280K","I298T","D305N","R324A","A343T"],"nef":["V16I","Q22R","M48I","C55W","R71K","K105R","H116N","E176N","I194T"],"p1":["K4R","N9H"],"p17":["A15Q","T70I","F79Y","A83T","I104M","V107I","N109K","G121A","Q130L"],"p2":["N9H","-11A","-12N"],"p24":["P14S"],"p6":["N14D","M17R","E19-","I21G","T22I","S23T","-26L","K33R","H35Y","V39S"],"p7":["Q9G","K10P","R11K","I12R","-13I"],"pro":["V13I","Q61E","L63P","I93L"],"rev":["A15T","K20N","T34N","A54E","T62S","G98E","P100S","S103P"],"tat":["T19P","S23N","K24T","Y47H","S61N","N67H","K71E","P75S","N80K"],"vif":["V51I","I87M","R92G","D117E","K122R","R131H","T155A","R158K","K176E","R181K","T188I"],"vpr":["Q3R","T19A","R62G","V70I","F72Y"],"vpu":["T2N","L18A","V43L","A50E","N81D"]},"labels":{"aa":"INT: E11D, N39S, D288N; RT-p51: V60I, N175Y, T200A; RT-p66: V60I, N175Y, T200A, R461K, H483Y, N519S, E529D, Q547K, S554T; gp120: S3A, D21N, E34A, H57P, D105I, -107E, N108L, -109N, T110E, -111T, -112E, -113T, -114D, -115S, -116S, -117A, -118R, -119L, -120G, -121N, -122M, -123T, -124D, S130T, K150M, I156M, N159S, N160K, S161N, S162Q, K203R, N206T, P210T, A238T, E241I, I243-, R245S, L249I, N261K, S263P, E265A, S278G, V288A, F289I, Y290V, T292-, G293-, D294-, K315E, A318K, K319E, E323Q, H324Q, F325V, K329Q, M345T, T360S, K361Q, L388I, N432E, -433S, N435I; gp41: M54L, V69I, K80Q, I91T, A96N, D113G, I118V, Y132F, N140I, M176I, G180S, A189T, T210I, P216T, R259H, A267V, R277Q, E280K, I298T, D305N, R324A, A343T; nef: V16I, Q22R, M48I, C55W, R71K, K105R, H116N, E176N, I194T; p1: K4R, N9H; p17: A15Q, T70I, F79Y, A83T, I104M, V107I, N109K, G121A, Q130L; p2: N9H, -11A, -12N; p24: P14S; p6: N14D, M17R, E19-, I21G, T22I, S23T, -26L, K33R, H35Y, V39S; p7: Q9G, K10P, R11K, I12R, -13I; pro: V13I, Q61E, L63P, I93L; rev: A15T, K20N, T34N, A54E, T62S, G98E, P100S, S103P; tat: T19P, S23N, K24T, Y47H, S61N, N67H, K71E, P75S, N80K; vif: V51I, I87M, R92G, D117E, K122R, R131H, T155A, R158K, K176E, R181K, T188I; vpr: Q3R, T19A, R62G, V70I, F72Y; vpu: T2N, L18A, V43L, A50E, N81D"}}}]},{"name":"CRF01_AE_NODE_0000002","node_attrs":{"div":0.10805999999999999,"clade_membership":{"value":"CRF01_AE"}},"branch_attrs":{"mutations":{"nuc":["G1090A","C1745-","C1753-","T4126C","C6148T","-6220A","-6989A","-6990A","A7160G"],"gp120":["N328-"],"p24":["S120N"]},"labels":{"aa":"gp120: N328-; p24: 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T102S, M176I, G180S, I298T; nef: C55S, N157T, S169N; p17: N109K; p2: A7V; rev: A54E; tat: S23N, K24T; vif: R160K; vpu: 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E34P, H35P, P49Q, L50*; p7: Q9P, K10R, R11K; pro: L10M, V11I, I93L; rev: K20N, Y28L, A31P, K39R, T62S, P100S, I109V, G111E, P112S; tat: P3L, N24P, I45L, N67Y, P68S, L74P, S77T; vif: R41K, K63R, R92G, N93T, S95I, Q127N, V128I, R130S, R131S, Q146R, R158K; vpr: T19A, V70I, F72Y, A93T; vpu: E5V, V10I, L42I, V43I, A50E, E63D, 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Q8T, M14L; p24: P14S, A78V, V83L, N120S; p6: S3N, P5L, G18K, K31R, K33N, E34P, H35P, P36-, L38S; p7: K10R, R11N; pro: K14R, I15V; rev: F28L, A37T, A54E, T68A, H82Q, K115E; tat: P3L, N7K, Q17R, A21P, N24K, K29Q, Y47H, P75T, P81Q, G83D, K85E; vif: K36N, Q47R, V51I, I59L, I63T, R67I, N93R, S95R, Y111H, R132E, K176N, P177L, N186C; vpr: A4P, N48Y, R62T, I63F, S96P; vpu: I13V, V14I, L16A, A27F, A30V, R31K, K32R, L34Q, R37K, R47S, E58D, E63D, 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V13I, G16E, K20R, D35E, P39S, K41R, L63P, I93L; rev: K39R, I55L, T62S, H82N, S106P, V108D; tat: E2D, S23N, K29S, E71K; vif: F39C, V51A, N93E, S95N, H110Y, V128I, K151R, T155A, R160K, N186Y; vpr: Q44E, I63T, F72Y, I84R, A93P; vpu: L12V, A27G, I33L, R35K, V69-, N81D"}}}]},{"name":"CRF01_AE_NODE_0000030","node_attrs":{"div":0.11834999999999998,"clade_membership":{"value":"CRF01_AE"}},"branch_attrs":{"mutations":{"nuc":["G697A","G2273A","A2881G","G3685A","C4761A","C5168T","T5333C","G5668A","C5713G","T5851G","G5956T","A6201C","T6213A","-6226T","T6849C","A6856G","-6960A","-6962A","G7026A","T8032G","C8213T","G8239A","G8404A","G8666T","G8753A","G8848A"],"RT-p51":["V60I"],"RT-p66":["V60I"],"gp120":["E34D","-379N"],"gp41":["L304F"],"nef":["R21K","Y81F","Y102H","E108D","S169N"],"p17":["S121D"],"rev":["T62A"],"vpu":["V21I","Q36E","L82V"]},"labels":{"aa":"RT-p51: V60I; RT-p66: V60I; gp120: E34D, -379N; gp41: L304F; nef: R21K, Y81F, Y102H, E108D, S169N; p17: S121D; rev: T62A; vpu: V21I, Q36E, 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P68L"}},"children":[{"name":"MW079300","node_attrs":{"div":0.16308,"accession":"MW079300","clade_membership":{"value":"CRF01_AE"},"country":{"value":"CN"},"date":{"value":2005.0},"Strain_name":{"value":"05GXD033"},"LANL_subtype":{"value":"CRF01_AE"}},"branch_attrs":{"mutations":{"nuc":["A388G","C602A","C645T","C668T","A711G","A716G","T774G","G821A","G977A","G1016A","C1098G","A1145G","T1172C","G1173A","G1268A","C1406T","A1461G","A1495G","G1498A","A1562G","C1610A","A1614T","C1615T","A1624G","C1627G","A1656C","T1682C","A1700T","A1701T","A1719G","G1739C","A1740T","C1775A","A1776C","-1778T","C1831T","G1835A","G2273A","G2386A","T2449C","G2580A","A2626G","T2694C","A2752G","G2808A","A2815G","A2825G","T2899C","G2909C","C2975A","G3010A","A3027G","A3124G","G3127A","T3172A","A3277G","G3279A","G3307C","T3368C","T3433C","G3538A","A3574G","A3684G","G3715A","A3727G","A3808T","A3854G","A3855G","G3989A","T4015C","C4126T","G4268A","A4333G","T4412C","A4498G","G4573A","T4585G","T4656C","T4715C","G4859A","T4868C","A4870G","C4889A","A4976G","A5049G","T5052C","G5087A","G5123A","T5125C","C5213A","A5285G","A5287G","G5289A","A5357G","C5397T","A5446G","C5451T","A5499G","G5652T","T5658C","G5673T","A5784G","A5817G","C5860T","G5954A","A5955G","G5956T","G5965A","A5972G","C6024T","G6029C","A6030C","C6067A","T6166C","A6167G","T6170G","G6172T","C6175G","T6181G","C6184T","T6185A","C6186A","A6194G","A6195T","T6196C","G6197C","-6203A","-6206G","A6275C","T6285C","T6301C","A6303G","C6317T","G6322A","A6330C","A6333G","G6336C","-6340G","A6362T","A6489C","C6499T","G6503A","G6628A","T6641C","C6678G","G6681A","A6686C","G6688T","G6726C","C6729A","G6732A","G6734A","A6735T","A6737G","C6763T","C6764G","A6767G","G6773A","A6779G","T6785A","T6786A","A6788G","A6799C","C6807T","G6810A","A6822G","G6849C","A6891T","C6955T","-6956C","-6957T","-6958A","-6984C","A6996C","G6999A","A7001G","A7037G","G7056A","A7085G","A7088G","G7089A","T7090G","T7156A","C7165T","T7466C","A7532C","G7534A","T7622A","C7623A","G7628A","A7629G","A7630T","G7633C","A7640G","C7645A","T7656C","A7688G","G7702T","G7717A","A7769G","A7790G","G7791A","T7801A","T7888A","A7977G","C7984A","C8009A","G8019C","G8030T","C8112T","C8120A","A8128G","T8171C","A8173G","G8191A","T8196C","C8287A","A8288T","C8311T","G8329A","G8330A","C8331G","G8356T","T8366C","A8367-","G8368-","C8369-","A8370-","T8371-","A8372-","G8373-","T8374-","G8375-","G8376-","G8377-","A8378-","G8393A","C8406A","A8407G","C8415G","A8497G","T8567G","G8588A","A8617G","A8621T","G8666A","T8711C","G8738A","T8756C","A8794G","A8795C","A8798T","G8808A","G8871C","G8904T","C8934A","T8939C","A8947T","A8981C","C9017T","A9131G"],"INT":["E11D","N27G","V72I","V165I","D270E"],"RT-p51":["V60I","S162N","I200T","R238K","I244V","A272P","P294T","K311R","R395K","E404D"],"RT-p66":["V60I","S162N","I200T","R238K","I244V","A272P","P294T","K311R","R395K","E404D","K530R"],"gp120":["E34S","I40V","P57L","E59P","N71K","N105D","A106V","-107T","-108W","-109T","T110N","-111V","-112T","-114S","-115T","-116N","-117V","-118P","S119N","-120I","-121G","-122N","-124T","K141Q","V144A","K150R","P155S","M156I","N158G","N160K","S161T","Y163T","I164K","T170S","K212T","V217I","S263P","T275R","R276K","M279-","T280-","I281-","G284-","P285-","G286-","R287-","V288-","F289-","Y290V","K291T","T292M","E294P","I295G","I305V","N309D","F311N","K312E","K315N","A318V","E323G","S332T","H346L","N365M","-368L","-369A","-379K","-381A","G382E","-383D","I395V","G401E","I411V","S412E","G434K","E436D"],"gp41":["K77Q","S107N","E109S","E110D","N113D","N114K","I118T","N129D","E133D","T156A","S163D","N166K","N195K","E225G","S239T","A243S","T270I","R273K","I298T","I329F","A343S"],"nef":["W5L","S9-","I10-","V11-","G12-","Q22R","P25A","-50S","N52-","K92R","E93D","R151S","E152D","D156N","D177H","A188S","L198M","Y202F"],"p1":["N9H"],"p17":["K18R","H89Q","S126G"],"p2":["I13V"],"p24":["L15V","P123A","V148I"],"p6":["T8S","N14D","-23K","-24Q","-25E","-26Q","Q28E","E29H","-31P","S51L"],"p7":["K10R","R11K","D48E","T50F","Q53R","A54G"],"pro":["V13I"],"rev":["A54E","E57D","S61I","T91Q","V108A","I109V"],"tat":["T24A","N80R"],"vif":["N95S","D101E","T155A","S156P","I180T"],"vpr":["D7N","P37T","I61V","R62K","I84M"]},"labels":{"aa":"INT: 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p17: K18R, H89Q, S126G; p2: I13V; p24: L15V, P123A, V148I; p6: T8S, N14D, -23K, -24Q, -25E, -26Q, Q28E, E29H, -31P, S51L; p7: K10R, R11K, D48E, T50F, Q53R, A54G; pro: V13I; rev: A54E, E57D, S61I, T91Q, V108A, I109V; tat: T24A, N80R; vif: N95S, D101E, T155A, S156P, I180T; vpr: D7N, P37T, I61V, R62K, 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-26P, S36A, V39I, N47S, L51S; p7: N12T, K41Q; pro: L10V, L90M; rev: D7N, D8E, R14N, R17K, R41Q, P67S, C85-, G86-, E87-, G88-, C89-, G90-, T91-, V108N, K115E, *117E; tat: N23T, K29I, L36M, N53K, S61R, P68S, P70S; vif: H56Y, V66I, G71S, D78E, R132K, S144P, K155R, K157T, H192Y; vpr: T19I, R36G, G41E, I46V, E58I; vpu: Q2L, V5G, V10A, V14I, K35R, -69D, 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D80A"}}}]},{"name":"CRF45_cpx_NODE_0000002","node_attrs":{"div":0.08338000000000001,"clade_membership":{"value":"CRF45_cpx"}},"branch_attrs":{"mutations":{"nuc":["-305A","T1724C","C2694T","A3151G","T3225A","G5087C","A5707G","G5864A","T6582G","A6605G","-6689A","G6693A","A6778C","-6831G","G7160A","A7373T","C7597T","T7642C","C8223T","A8531G","T8770A","G8868C","C8978A"],"RT-p51":["A200I","A272P","M377Q"],"RT-p66":["A200I","A272P","M377Q"],"gp120":["D4N","M243R","N251D","-373N","-377S"],"gp41":["T307I"],"nef":["F143Y"],"vif":["R167S"]},"labels":{"aa":"RT-p51: A200I, A272P, M377Q; RT-p66: A200I, A272P, M377Q; gp120: D4N, M243R, N251D, -373N, -377S; gp41: T307I; nef: F143Y; vif: 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I74L, V112T, D134G, Q136H, E167D, T206S, D207E, I220V, A265V; RT-p51: E6N, V8I, K11Q, K49R, K122E, D123N, F171Y, K174R, E177D, K277R, A286T, P294S, A297T, S322A, Y346H, I357T, S359A, V375I; RT-p66: E6N, V8I, K11Q, K49R, D123N, F171Y, K174R, E177D, K277R, A286T, P294S, A297T, S322A, Y346H, I357T, S359A, V375I; gp120: N4S, T35A, E59V, H77Q, N102E, T104H, -108N, -109I, -112N, -114T, -115G, -116I, -123K, -124E, K127R, F131Y, L151I, Q155P, N161I, S162L, K201N, E240D, E241D, R243K, A253V, L260F, N261A, E262T, N272G, Q287K, A291T, T292D, G293D, D294I, S306T, K307A, T308S, N309S, N311K, T313A, K316N, A318T, A319K, K320E, -328T, K329-, -368F, -370E, -372A, -374V, -375T, -376G, N397R, Q404K, V414E, N420T, N435V, E479Q; gp41: L9F, I24L, R74A, T96N, S102N, N105S, S107A, Q108Y, D113G, S125N, Q129G, D148E, A151E, S165T, N166K, M176I, S239N, A245V, N298K, I309V; nef: T23A, D38A, V43I, S46R, G83A, V85F, V101I, Y120F, M148I, E152D, I168M, S169N, R178G, K184T, K198E; p1: S9N; p17: K30T, L31M, L46I, G49S, L64I, A67T, K76R, Y79F, D93K, I107L, S124N; p2: T10V; p24: I15V, S16T, I27V, V83T, I124V, E128D, T178S, E187D, R203K, G220A; p6: T22S, Q30L, P36A, V39I, S51L; p7: R3K, G4S, T50S; pro: V13I, V15I, E35D, I85V; rev: S7-, T8S, D9T, I21L, L64V, A68E, A98G, K115E, *117E; tat: E2D, V36A, L39I, N40T, R56G, G57T, T58P, P59H, H60G, S61-, N67T, I69V, K71E; vif: R17K, K33R, G37D, V98I, H127D, Q136P, T137A, N140S, S144T, Y147F, T155K, T159R, K160R, R181K, G182D, H187R, M189I; vpr: E17Q, T19A, H28Q, T49N, I63M, Q77N, R85P, A93S; vpu: Q2N, P3A, E5V, L7T, A8-, V14A, I21G, T24I, I25L, V26A, K37E, I75A, G77I, D78N, I79N, D80-, 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N160S, D163S, K172R, L273I; nef: R21K, E62G, E65P, Y102H, V114I; p1: K4R; p17: S9T, K28Q, K95R, S111Q, Q113T, K114-, T115-, D121G, S126C, V128I; p2: S5T, -10T; p24: V11I, A14S, E45D, Q50H, M54A, I58V, E79D, I91H, M96L, I115V, G116A, A177S; p6: M17V, -30G, D32-; p7: I12N; pro: R70K; rev: V15A, G90R, T91D, V97L, S107P; tat: N12K, P59A, H65N, P68S; vif: Y30H, H48D, K50R, D61E, K63W, T67R, H73Q, T74P, L124I, Q127R, V128I, Q136P, N140S, R167K; vpr: R62K; vpu: A7Y, A8S, F27L, R31K, K37R, E40D, 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Y","R41K"]},"labels":{"aa":"INT: R14K, G106A, Q221S; RT-p51: E169D, T173K, A200T, K211R, Q245T, D248E, D250E, A272S, K277R, D291E, I292V, V293I, I329V, R357M, S359G, V375I, T377L, M403R, V435M; RT-p66: E169D, T173K, A200T, K211R, Q245T, D248E, D250E, A272S, K277R, D291E, I292V, V293I, I329V, R357M, S359G, V375I, T377L, M403R, V435M, E471D, H480Q, H483N, S491L, R512K, N519S, K524Q, E527K, K530R, S534A; gp120: N108-, N160-, N161-, S162-, K201N, P210K, K212R, E241K, A288V, N369-; gp41: N109K, P219H, V235I, L265S, V290L, D305N, A310V, A322I, F340L; nef: Q15K, I20M, R21Q, P24E, Q35R, D38E, F85V, D98E, I101V, Y102W, K144E, A151E, A156D, I168A, E174D, E176P, R178K, M182V, K184R, D186N, L191F, K192E, I194K, E197I, L198M; p1: S9H; p17: A119T, G123R, S124N, K127Q; p2: Q8T, -10S, -12T; p24: A6L, S33N, M54T, I58T, D71E, V83L, P92A, G116A, F169Y, T178S, E180D, S200T, G225S; p6: P1L, M17F, S23-, S24P, P25S, -26Q, E29D, R31K, *50L; p7: R3K, Q9L, R11K, I12V, I13V, L24I; pro: K69Q, M89L; rev: V16I, R53H, G96Q; tat: N24T, V36L, R62H, P84T; vif: G37K, H48N, K50R, R67K, R77K, H80Q, T159S; vpr: I46V, E48T, I84T; vpu: P3A, E5Q, F27Y, 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R14K, Y227F, S255N; RT-p51: P4S, R104K, D123N, I135V, I178M, P243S, K281R, S322T, I329L, A376T, V435I; RT-p66: P4S, R104K, D123N, I135V, I178M, P243S, K281R, S322T, I329L, A376T, V435I, S491P, K554R; gp120: D4N, D57N, Q104H, -112S, N113T, -123K, G124E, L137I, Q142H, P155Q, N158A, N161T, S162T, I173M, E183D, K212T, E241G, I256L, I258V, V261A, K262S, N272G, A291S, -293D, D297N, H302Y, K307E, E309D, Q315K, Q319G, K323E, H324Y, I344T, G351R, -368Y, -372T, -373M, -382N, N397R, R401K, I414E, L424I, N432Q, N433E, V460I, E464K, R472P; gp41: Q29R, I37T, R46K, K56R, N96T, D109E, D113N, Q119E, S125D, Q129H, Q147R, A156D, A189T, V193I, T210P, R221G, T307V, V321I, A325V; nef: V11P, I28P, A50T, C55R, L58V, G64E, G83A, K105Q, H116N, Q125H, P129S, G159R, M173I; p1: S9N; p17: K28R, M31L, L46I, T81A, S109R, N110K, K114R; p24: E79D, V83T, N121D, Q179R, N183G; p6: F15L, R31G; p7: S4G, R7K, K34R; pro: N37D, K70R; rev: D7V, A8T, V15I, V16A, Y28S, S31P, K39R, A54E, F67P, G96Q, L103P, I109V; tat: N7K, C34-; vif: K36T, D37G, G60R, D117E, K122T, A123V, I124T, D134N, A137S, R159I, K167R, N190H; vpr: E17A, E24D; vpu: Q5H, A18V, V21I, I28L, R34V, D40N, R41K, E66K, 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R14K, V72I, S119P, F185L, R187E, R284G; RT-p51: E28A, K39D, K49R, V60I, S322T, V375A, D432E, V435A; RT-p66: E28A, K39D, K49R, V60I, S322T, V375A, D432E, V435A, I495V, E514D, L517I, K530R, K558R; gp120: S1L, A2E, S3A, N4S, -5K, L6F, T9I, V10F, Y12F, V14G, V16G, D21N, T22A, C26G, A27Y, D29Y, A30P, A32T, Y33H, D34K, T35N, E36*, V37P, H38T, N39K, V40D, T43G, A45G, T49F, D50Y, Q54K, E55*, V59A, N60I, T62-, E63-, E78-, D79-, I80-, I81-, S82-, L83-, W84-, D85-, Q86-, S87-, L88-, K89-, P90-, C91-, V92-, K93-, L94-, T95-, P96-, L97-, C98-, V99-, T100-, L101-, N102-, C103-, T104-, -122E, -123P, -124G, E125A, R127Q, M133I, K141Q, R142K, N159T, N160D, S162K, A176G, K201R, K212N, E241D, N261T, I269M, T275A, R276K, K277I, S278R, I279H, R280-, -282H, -283I, A288V, Y290H, A291T, R292N, G293N, D294-, I295-, Q300K, H302Y, N304E, S306N, K307G, Q315R, Q319E, R322-, H324Q, W325K, -326Y, -327W, K329N, I332N, N335K, S336P, L343I, N358Y, G361K, S365G, W367L, -368H, -370G, T371N, -372W, -373S, T374M, -375P, -382G, -383K, -384G, P389Q, R391K, V402T, I414V, R416K, N432G, T436E, N437T, D446N, R448K, E479Q; gp41: S35T, K90R, S107N, Q108L, D109T, N114K, S125N, D148E, G215D, R233K, L237F, L244I, C253F, L265S, R276H, L277S, W286K, G293V, T302S, L304F, A310V, V311I, I321T, G326C, H331N, F340L, E341K; nef: S8N, S9R, I10L, V11E, P14S, R19I, E28K, V33P, D36G, L37V, D38G, H40L, G41S, A42P, I43-, T44-; p1: S9H; p17: R30K, L34I, V35I, L46I, E62G, V82I, D93E, N109Q, K114Q, K127N; p2: Q8H, -12S; p24: V27I, H87Q, E187D; p6: P5T, S23P, R31K; p7: Q9K, R11T, D48E, T50P; pro: L10I, K69Q; rev: T8P, R32K, D53N, I55V, S56C, T62D, S67P, A68T, V104E, E105K, I109V; tat: E2D, W32Y, V36A, H54P, P70S, V80I; vif: R19K, T20S, L24I, G37N, V51I, R63K, R67T, H73Q, K77Q, H80Q, L102M, D113K, I124L, R130I, Q136P, N140S, V166I, R181K, N190S, *193W; vpr: Y15H; vpu: V10I, G11R, V14I, A15S, A19T, V21I, I25M, V26L, A27I, Y30F, R34K, Q36H, R37N, D40C, L42F, E44G, R45T, R47*, E48K, A50S, E51K, D52C, S53G, S57L, E58*, D62Y, E63*, 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I31V, I50M, I113V, T218I, R284G; RT-p51: E6D, T11Q, K49R, Y121H, G123D, A173T, N175Y, P243A, Q245E, D248E, E297K, D312E, I329V, S379A, K388R, V435I; RT-p66: E6D, T11Q, K49R, Y121H, G123D, A173T, N175Y, P243A, Q245E, D248E, E297K, D312E, I329V, S379A, K388R, V435I, N447S, R461K; gp120: N4-, -5K, R18K, D21E, N57E, M67I, N71K, K93Q, N102K, -105A, -106N, -122E, -123I, -124N, -126I, K141Q, L151V, N160I, N161S, S162E, V226M, I269V, S278G, I281M, Q287K, A288V, R292Q, H302Y, W325Y, N335K, -368N, -370D, -372V, -377N, N379D, I387T, P389Q, I414V, L424I, N433D, N434S, T436-, R448K, E479Q; gp41: V2I, V7F, I24L, S42N, H53Q, S107T, D109K, S133G, L152F, T157N, R172K, I193V, T210V, T232G, V238A, D247E, C253L, L254I, F263L, I264V, V290T, T302S, I309V; nef: G3N, Q22R, A53P, G83A, L100M, F139P, G140A, Y143F, R151V, E154G, N156D, E174D, R178G, S187T, I194V, M198L; p17: M31L, E42D, A54G, Q58L, T67A, S72T, L75I, S124N, S125N, K127Q; p24: V3M, V15L, M83V; p6: S14N, F15W, P36V; p7: K7N; pro: L10I, N35D, L63S, 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D80N"}}},{"name":"MN153487","node_attrs":{"div":0.17154000000000003,"accession":"MN153487","clade_membership":{"value":"CRF22_01A1"},"country":{"value":"CM"},"date":{"value":2008.0},"Strain_name":{"value":"08CMBDSH138"},"LANL_subtype":{"value":"CRF22_01A1"}},"branch_attrs":{"mutations":{"nuc":["C193T","A374G","G386A","G407A","C496G","C531G","C532T","A541G","A585G","C586T","A654C","G671A","A678C","C679A","G697A","A699G","-714C","G738A","T824C","A989C","G1016A","C1061T","A1089G","G1109A","A1157G","G1199A","T1223C","G1298A","G1313A","C1322T","C1331T","C1385T","G1388A","G1403A","G1430A","A1452C","G1455A","G1472A","A1565G","G1619A","A1703T","C1706T","G1771A","A1772G","A1819G","C1868T","A1927G","G1963A","A1982G","T1986C","A2190T","C2296T","A2297G","C2299T","C2353A","A2508C","G2539A","A2626C","A2693G","A2808C","T2873C","G2914A","G2929A","G2951A","C2960T","T2978C","C3023T","A3145G","G3162A","A3165G","T3175C","A3192G","A3199G","A3200G","C3201T","G3203A","A3205T","G3208A","G3230A","C3252T","C3266T","A3400G","G3409A","T3433C","C3469A","T3602C","G3631A","T3644A","A3682C","A3709G","A3768G","G3769A","A3836G","T3843C","T3865A","A3896G","A3907G","A3973C","G3991A","C4021T","A4048G","A4071T","A4130C","G4131C","C4140T","C4144T","G4243A","A4270T","A4407G","T4537C","A4625G","A4721C","C4761T","G4774A","T4793C","C4800T","G4802A","A4811G","A4815C","C4826A","G4864A","A4865G","G4870A","T4883C","C4899A","A4968G","G5049A","C5050A","T5084C","T5102C","C5125T","G5128A","T5147C","C5149T","A5159G","A5161C","G5226A","T5228C","A5230G","A5246G","A5277T","C5280T","G5359C","G5403T","A5426G","G5482A","T5490C","A5548C","G5556A","G5566A","G5599C","T5600C","A5601G","T5602C","C5611A","C5614T","G5619T","G5620A","G5628A","G5683A","G5686C","A5689-","T5690-","A5691-","G5692-","A5693-","A5694-","T5697-","A5698-","G5699-","G5700-","G5712A","C5713G","A5719-","A5720-","A5721-","A5722-","T5723-","A5724-","G5725-","A5726-","C5727-","A5728-","G5729-","G5730-","T5731-","T5732-","A5733-","C5734-","T5735-","T5736-","G5737-","A5738-","A5739-","A5740-","G5741-","A5742-","A5743-","T5744-","A5745-","A5746-","G5747-","A5748-","G5749-","A5750-","A5751-","A5752-","G5753-","A5754-","G5755-","C5756-","A5757-","G5758-","A5759-","G5767A","G5768A","G5775A","G5779A","G5812T","A5818G","C5826T","C5833T","A5849T","T5857G","-5864A","-5866C","G5909A","G5915A","C5922T","C5944T","A5983T","A6008G","A6037G","T6046G","C6052T","C6165T","-6169G","-6171T","-6174A","-6175A","A6182T","T6187C","A6188C","C6189G","C6190A","-6191G","-6192G","-6193A","-6195A","-6197G","-6198A","-6199C","-6201C","C6202A","-6203G","-6204C","-6205G","A6206G","-6207A","-6211G","-6217T","-6219A","-6220C","-6221A","-6222C","-6223A","-6225C","-6226G","G6230A","G6234A","T6241C","T6242A","C6263A","A6273G","A6282G","T6298C","G6317A","A6320T","-6322G","A6327G","T6340C","G6345T","A6346G","C6347T","A6350G","T6418C","C6446T","T6460C","C6483T","C6511T","G6547A","G6593A","A6605G","T6649A","T6660C","A6683G","T6787C","G6802T","A6808C","A6821G","A6823T","A6840C","A6848G","T6860C","C6861A","T6875A","A6881G","A6926G","G6935A","C6937A","-6963T","-6964G","-6968T","-6969G","-6970G","-6971A","-6972A","-6973T","-6974A","-6975C","-6976G","G7004A","-7005A","T7014G","T7015A","G7072A","G7102T","C7124T","C7127T","A7135G","T7150C","A7155G","T7159C","G7160A","C7161G","A7162T","C7201T","T7222C","C7250T","G7276A","A7348T","A7396G","T7591C","T7606A","T7622A","C7625T","G7627T","A7630T","A7641G","T7642C","G7677A","C7690A","G7701A","C7782A","G7790A","G7862A","G7873A","T7921C","G7980A","G7995A","A8069C","G8070T","C8080A","T8094G","C8106T","A8119G","T8138A","G8145C","C8149T","T8172A","C8213T","G8216A","C8293T","C8369T","A8400C","C8416T","A8420G","G8439A","T8456C","T8505C","G8506T","G8535-","A8536-","G8537-","G8558A","A8584T","G8590C","A8663G","G8666T","T8672G","G8682A","G8738A","G8804A","A8808G","A8812C","T8813C","A8827C","T8829A","A8859G","T8860C","T8887G","G8888A","A8893C","C8934A","C9068T","C9075T","T9084A"],"INT":["T21A","V23A","N41D","Y99F","S119P","T122I","K211R","R284G"],"RT-p51":["K32I","S68G","D86E","E138A","E177D","K238T","A286T","R356K","K357R","K366R","T369V","E370N","T386I","I435M"],"RT-p66":["K32I","S68G","D86E","E138A","E177D","K238T","A286T","R356K","K357R","K366R","T369V","E370N","T386I","I435M","L517I","E529D","K558R"],"gp120":["S1R","-5N","D19N","T23I","N52D","N64K","T104I","-105E","A106V","-108N","-109D","-111A","-112E","-113M","-123K","-124K","-126V","-127K","S130T","M133I","L137I","K140R","K143R","I156L","N158S","N159S","I166V","P210L","E247K","N251D","N265K","N272S","K277E","D294E","Q316D","E323D","K329T","I332V","S336H","L341I","I343V","N358D","G361R","-370M","-372W","-373S","-375T","-377S","G382N","I387R","M406I","N434S","T436S"],"gp41":["S107T","Q108Y","D113G","S125N","D129E","S133N","T160N","D163N","V187I","G226D","R231K","S256L","I264S","A268V","W279R","G281A","V290K","L304F","D305N","W326C"],"nef":["I20L","A25V","V33I","C55L","E65-","Y81F","G83A","E108D","V114I","N156D","N157T","N162T","C163S","M173A","M182R","K184T"],"p17"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T21A, V23A, N41D, Y99F, S119P, T122I, K211R, R284G; RT-p51: K32I, S68G, D86E, E138A, E177D, K238T, A286T, R356K, K357R, K366R, T369V, E370N, T386I, I435M; RT-p66: K32I, S68G, D86E, E138A, E177D, K238T, A286T, R356K, K357R, K366R, T369V, E370N, T386I, I435M, L517I, E529D, K558R; gp120: S1R, -5N, D19N, T23I, N52D, N64K, T104I, -105E, A106V, -108N, -109D, -111A, -112E, -113M, -123K, -124K, -126V, -127K, S130T, M133I, L137I, K140R, K143R, I156L, N158S, N159S, I166V, P210L, E247K, N251D, N265K, N272S, K277E, D294E, Q316D, E323D, K329T, I332V, S336H, L341I, I343V, N358D, G361R, -370M, -372W, -373S, -375T, -377S, G382N, I387R, M406I, N434S, T436S; gp41: S107T, Q108Y, D113G, S125N, D129E, S133N, T160N, D163N, V187I, G226D, R231K, S256L, I264S, A268V, W279R, G281A, V290K, L304F, D305N, W326C; nef: I20L, A25V, V33I, C55L, E65-, Y81F, G83A, E108D, V114I, N156D, N157T, N162T, C163S, M173A, M182R, K184T; p17: A54G, P66V, S67N, K69R, T84V, I107L, T115Q, A118E, G121D, T122A, K127Q; p2: T10P, G11S; p24: V3M, S120G; p6: R31K, N47S; pro: I62V, L63P; rev: E11D, R14K, Q74P, L78I, H82Q, T91A, V97E, R99S, Q101*, L103F, D108E; tat: E9D, Q17R, V36I, T58P, D64N; vif: E45D, R63K, K77Q, H80Q, R93K, S95N, Q105K, I128V, A155K, T180I, R181K, T188I, H192P; vpr: Y15H, T19A, G41D, N48D, E58V, A59V, R85P; vpu: P3S, L4F, E5D, W7*, V26-, A27-, I28-, E29-, Y30-, R31-, K32-, Q36I, R37I, K38-, I39-, D40-, R41-, L42-, L43-, E44-, R45-, I46-, R47-, E48-, R49-, A50-, 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R62H, K71E, E86K; vif: R36S, F39V, S46N, R47G, R67T, Q73H, T74P, R77K, H80L, I87M, R90T, Q91L, K92R, R93S, S95K, D101A, V166I; vpr: T19A, H45Y, I63T; vpu: V14I, K38N, -70Y, -71D, 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D78A, K92E, L125V, E127Q; vpr: R32K, S94G; vpu: V21A, K37E, D40N, N69D, -73H, -74V, -75P, 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V245F, F340L; rev: C63F; vif: M29I; vpr: H45Y, 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S24N, S119T, A124S, I208L, T218I, N222Q; RT-p51: T39A, S68G, E177G, A272P, K277R, L279M, R307K, V375I, T377Q, V435R; RT-p66: T39A, S68G, E177G, A272P, K277R, L279M, R307K, V375I, T377Q, V435R, V466I, T470D, E471G, H483Y, E514D, L517I, S534A; gp120: -3N, E4-, -5K, K18R, I56M, H57N, L58I, E59T, T104S, -105N, -106I, -107K, N108K, -109D, -110V, -112S, -114I, -115S, -116C, -117G, -118K, -119R, -120L, -121T, -122E, -123H, V133A, T135A, E136D, K141Q, K143E, A146S, R150K, V153I, Q155P, N157Q, N159H, S162I, Y163F, N167I, A191T, F195Y, T216S, Q259H, K262E, P263T, N272G, V279I, T292A, D297N, Q300K, V305I, T308G, N312K, K316R, K323E, -326P, T330I, I332M, N335S, S347I, N349S, -368D, N369G, -370T, T371A, -372Q, -373S, -381D, -382D, N383D, T387L, Q389P, C390R, K393N, Q394I, V396I, W399R, Q400R, Q404L, A405S, M406I, Y407S, I411R, Q412R, E414T, I415R, E418T, N420I, G423V, R428G, D429G, G431S, N432T, N433T, N435T, T436N, N437D, E438D, F440L, R441P, P442A, G445E, D446K, R448N, D449Y, N450C, W451R, S453-, 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R14K, I72V, T136K, G163T, I234-, P238-, V281M; RT-p51: K20R, T35I, K104E, V135I, N137S, A158S, A162S, T165I, T173A, V326I, K366R, T369A, V375A, T377M, K395R, A400T, V435A; RT-p66: K20R, T35I, K104E, V135I, N137S, A158S, A162S, T165I, T173A, V326I, K366R, T369A, V375A, T377M, K395R, A400T, V435A; gp120: N1S, -5K, H57K, H77N, -109I, -110T, N113-, -116S, -117G, -118N, -119N, -120I, -121K, -122E, I126T, E136D, K141E, L151I, V153I, I156F, N157K, N161V, F195Y, N201R, K203E, K224R, E240K, L260F, K262Q, P263S, K265T, N272S, T292A, Q300R, K307G, A308S, E309K, N312S, T319Q, K323D, H324N, F325Y, -326F, N327Q, A334D, N335K, S336H, S365G, S370G, -372S, -373S, -377S, -379H, -381W, -382V, Q404R, R416K, E418V, T471Y; gp41: L4I, F8L, I24M, K46R, R77K, N109K, N133D, E137Q, A156D, N160S, D163N, N166K, L191I, H211Q, G225E, D230G, R231K, V235I, F263L, A264L, L277R, N287S, Q294R, I307V, V311T, I321L, G322V, R324G, R330L; nef: W5C, S9I, I10V, V11-, T23G, P24A, P25G, F85V, E152D, V153I, G159E, K192T, R196K; 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D81N"}}},{"name":"CRF02_AG_NODE_0000018","node_attrs":{"div":0.14386000000000002,"clade_membership":{"value":"CRF02_AG"}},"branch_attrs":{"mutations":{"nuc":["T117G","A159-","-167A","A356G","C482T","A509C","G518A","A527G","A540G","A541G","C558A","C583T","T596C","A605G","T646G","G667A","A670G","A673G","A674G","A675C","G706A","-711A","-712G","-713T","A762G","A878G","C897T","G908A","G932A","A968C","A1025G","G1192A","G1199A","T1214C","G1247A","T1262C","G1268A","C1295T","G1301A","T1421C","-1456A","A1458-","C1460-","A1529G","T1613C","T1682C","G1727A","A1736G","A1740G","C1752T","G1760T","A1766G","T1790G","C1873T","A1906T","C1985T","T1986C","A2179G","G2215A","A2329G","G2362A","C2464A","T2476C","T2479G","G2498A","T2499A","G2518A","G2530A","A2616G","A2699G","G2714A","A2726C","G2727A","A2728C","C2740T","A2743C","A2788G","C2845T","T2908C","G2932A","T2935C","G3029C","A3043G","C3055T","C3067T","T3118A","T3132A","A3192G","G3264A","G3293A","T3303C","A3400G","T3412C","G3448A","A3532G","C3542T","A3574G","A3583G","G3595A","C3649T","T3652C","G3664A","C3712T","C3751T","G3756C","T3757C","A3768G","G3869A","G3907A","A3944G","A3953G","A3973T","G4156A","A4162C","G4306A","C4428T","T4450C","A4522T","A4558G","C4576T","G4637A","A4650C","T4703G","A4787G","C4800T","G4802A","C4820T","A4862T","A4865C","T4886C","C4902T","C4911T","A4956C","G4968A","G4981A","G5018A","C5034A","G5036A","A5049G","C5050A","G5060A","A5065G","T5078A","A5119G","C5125T","G5143A","G5179A","T5203C","C5213G","C5214T","A5215G","A5227T","T5239G","G5246A","A5248C","A5277T","T5293C","C5397A","C5398A","C5412T","T5448C","T5462A","G5537C","C5572A","A5602T","A5665T","G5668A","C5678G","T5739G","T5778C","G5784A","G5839C","A5848G","A5856G","G5881A","C5884A","T5899G","G5954C","A5957C","T5964C","C5974T","C6023G","T6064C","G6076A","G6079A","A6087G","C6109T","A6119C","T6154A","-6167G","-6169C","T6181C","C6183A","-6192A","-6197A","-6199C","-6200A","-6202C","-6205T","-6220G","A6235G","T6242A","G6260C","A6261T","A6262C","T6337C","A6394G","C6446T","T6454C","T6457G","G6572A","A6578G","A6580G","A6602T","A6605G","C6612G","C6618T","A6648G","G6669A","A6684C","A6691C","G6742A","T6760C","A6775T","C6800G","T6808C","C6838T","C6840A","C6855A","T6856G","A6857G","C6859A","T6860C","C6861A","C6862T","T6875G","A6881G","T6952C","A6986-","A6987-","T6988-","A6992-","A7005-","C7006A","A7010C","A7012C","A7020C","T7039C","G7040A","C7089A","G7094A","G7101A","G7102A","G7106A","A7108T","C7124T","A7129G","A7136C","A7138G","T7153C","T7159-","A7161-","A7265T","G7315A","C7463A","A7470G","A7532C","A7552C","C7590A","C7597A","C7623G","C7651A","A7668G","C7684T","A7700C","C7792T","T7801A","A7807G","A7822C","G7868A","A7880T","A7943G","A7953G","G8001C","C8038T","T8094C","C8095A","A8118G","T8122-","C8123-","T8124-","G8125-","G8126-","G8127-","A8128-","C8129-","A8130-","C8131-","A8132-","G8133-","C8165G","T8171G","A8208G","C8251T","G8279A","G8280T","A8308G","C8321T","G8354A","A8385G","G8388A","T8390C","A8402G","A8407G","A8409G","C8411A","C8412G","C8413A","T8414G","C8415T","A8441G","A8455C","A8474C","G8528A","G8537A","C8543A","A8573G","T8585C","T8594A","A8812C","A8879G","T8897C","C8906A","G8929A","C8957T","C8964T","G8977A","A8978G","C8979A","G9005A","G9006C","G9007T","A9009G","T9012G","G9013C","G9016T","T9017C","T9018C","T9019G","A9023T","G9025T","A9026G","T9036-","G9037-","G9038-","C9039-","T9040-","A9041-","A9042-","C9043-","C9044-","C9045-","T9046-","C9047-","A9048-","G9049-","A9050-","T9051-","G9052-","C9053-","T9054-","G9055-","C9056-","A9057-","T9058-","A9059-","T9060-","A9061-","A9062-","G9063-","C9064-","A9065-","G9066-","C9067-","C9068-","G9069-","C9070-","T9071-","T9072-","C9073-","T9074-","C9075-","G9076-","C9077-","C9078-","T9079-","G9080-","T9081-","A9082-","C9083-","T9084-","G9085-","G9086-","G9087-","T9088-","C9089-","T9090-","C9091-","T9092-","C9093-","T9094-","T9095-","G9096-","C9097-","T9098-","A9099-","G9100-","A9101-","C9102-","C9103-","A9104-","G9105-","A9106-","T9107-","T9108-","T9109-","G9110-","A9111-","G9112-","C9113-","C9114-","T9115-","G9116-","G9117-","C9121T"],"INT":["V32I","S57G","I60V","T218I","D288N"],"RT-p51":["D123E","V135K","K174R","I202V","E207K","R211H","E312Q","F346Y","K366R","R390K","A400T","M403T","V435M"],"RT-p66":["D123E","V135K","K174R","I202V","E207K","R211H","E312Q","F346Y","K366R","R390K","A400T","M403T","V435M","H483Y","S554T","K558R"],"gp120":["N1S","-3N","E4-","D34Q","T35P","V37A","H57N","E78G","K89Q","T104H","-115S","-116S","-118S","-121M","S130T","E136L","S162Q","E240K","I242V","T250S","N251D","A253G","T255I","N261T","K265R","K277T","Q316E","N327-","T329K","A334K","N335E","S336H","L341V","I343V","I386L","Q389P","V396I","P412Q","V414I","R416K","E418N","N435-","T471S"],"gp41":["L54M","K56R","R77Q","T96N","T107S","K122R","I130T","N166K","A189T","I193L","D217G","R233T","V264A","E272G","L274-","G275-","R276-","L277-","L288V","S290T","N302S","G326I"],"nef":["V16I","I20M","Q22R","P24R","P25V","D38A","C55S","N157T","R196K"],"p17":["Q58H","M61I","L75I","A83V","I104R","S111N","K112R","Q113R","K114Q","S124N"],"p2":["Q8T","Q9N","S10V","S11-"],"p24":["R154K"],"p6":["I21V","-26N","K27-"],"pro":["L63S"],"rev":["A8P","E32G","Q51H","A68E","L83I","S92-","G93-","T94-","Q95-","S106C","I108S"],"tat":["S7R","L8I","R54P","Q66K","T82A"],"vif":["N22H","F39L","K92N","R93S","I124L","V128I","R132K","L150I","T155E","Q178R","T180I","S186N"],"vpr":["P37V","H45Q","E48N","Q58I"],"vpu":["I20L","V21I","T24S","D44E","-74F","-75N","D78-","N79-"]},"labels":{"aa":"INT: V32I, S57G, I60V, T218I, D288N; RT-p51: D123E, V135K, K174R, I202V, E207K, R211H, E312Q, F346Y, K366R, R390K, A400T, M403T, V435M; RT-p66: D123E, V135K, K174R, I202V, E207K, R211H, E312Q, F346Y, K366R, R390K, A400T, M403T, V435M, H483Y, S554T, K558R; gp120: N1S, -3N, E4-, D34Q, T35P, V37A, H57N, E78G, K89Q, T104H, -115S, -116S, -118S, -121M, S130T, E136L, S162Q, E240K, I242V, T250S, N251D, A253G, T255I, N261T, K265R, K277T, Q316E, N327-, T329K, A334K, N335E, S336H, L341V, I343V, I386L, Q389P, V396I, P412Q, V414I, R416K, E418N, N435-, T471S; gp41: L54M, K56R, R77Q, T96N, T107S, K122R, I130T, N166K, A189T, I193L, D217G, R233T, V264A, E272G, L274-, G275-, R276-, L277-, L288V, S290T, N302S, G326I; nef: V16I, I20M, Q22R, P24R, P25V, D38A, C55S, N157T, R196K; p17: Q58H, M61I, L75I, A83V, I104R, S111N, K112R, Q113R, K114Q, S124N; p2: Q8T, Q9N, S10V, S11-; p24: R154K; p6: I21V, -26N, K27-; pro: L63S; rev: A8P, E32G, Q51H, A68E, L83I, S92-, G93-, T94-, Q95-, S106C, I108S; tat: S7R, L8I, R54P, Q66K, T82A; vif: N22H, F39L, K92N, R93S, I124L, V128I, R132K, L150I, T155E, Q178R, T180I, S186N; vpr: P37V, H45Q, E48N, Q58I; vpu: I20L, V21I, T24S, D44E, -74F, -75N, D78-, N79-"}},"children":[{"name":"MK177826","node_attrs":{"div":0.1587,"accession":"MK177826","clade_membership":{"value":"CRF02_AG"},"country":{"value":"ES"},"date":{"value":2012.0},"Strain_name":{"value":"P3075"},"LANL_subtype":{"value":"CRF02_AG"}},"branch_attrs":{"mutations":{"nuc":["G164A","C200T","C456T","G687A","-714C","-715A","-716A","-717A","-718T","-719C","T788A","G791A","C1060A","G1078C","A1089G","C1098G","A1134G","A1142G","C1342G","A1442C","-1452A","G1553A","G1562A","A1657G","G1848A","A1903C","A1920G","A1990G","T2087C","A2194C","G2224A","A2512T","C2533T","A2557G","C2694A","C2806T","T2873C","T2968C","A2975G","C2976T","A3019G","C3100T","G3188A","G3206T","T3577C","A3685G","G3816A","C3826T","A3982G","A4130G","C4140T","C4288T","G4550A","G4695A","T4701G","A4901C","A4997G","C5221A","T5356C","T5467G","G5468T","C5478T","T5482A","C5559T","C5611A","G5629T","-5824T","C5839T","A5840T","-5861A","G5899A","G5972A","T6025G","-6164C","-6165A","-6166C","G6167A","-6170T","-6171T","-6172C","-6173A","-6174A","-6175C","-6177G","-6178T","-6179A","-6180C","C6189A","A6192G","A6194T","-6195C","-6203A","-6204G","-6207G","-6208C","-6209G","-6210A","-6211A","-6212A","-6213A","-6214A","-6215A","-6216T","-6217G","-6218G","A6221G","G6226A","T6328C","G6329A","A6330G","-6331T","-6333A","-6340C","A6544T","T6694C","A6727G","G6767A","A6790C","C6807T","G6823A","A6858G","-6956G","-6957A","T6958G","A6962G","-6963A","-6964A","-6966A","-6968A","-6969A","-6970C","-6971A","-6972C","-6973T","-6974A","-6975C","-6976C","-6977A","-6978A","-6979C","-6980T","-6981C","-6982A","-6992T","-6994T","-6996C","-6997A","-6998G","-6999A","-7000G","-7005T","A7037G","T7130C","C7155A","A7158C","-7159A","-7161C","T7222C","C7268T","T7462A","T7609C","T7615C","G7688A","T7692C","C7700T","A7701C","G7717A","G8050T","A8152G","A8271T","G8385C","G8387A","T8483C","C8491A","T8506G","C8590A","T8646C","A8652C","A8655G","A8660G","C8740T","A8784G","G8808C","C8809T","G8861A","G8864C","G8868C","A8869C","C8873A","T8923C","A8932T","T8964A","C8990T","A8991G","C8992A","T8993C","G8994A","G9008A"],"INT":["R14K","S119G","T122I","V259I"],"RT-p51":["A200E","T294V","V365I","V371L"],"RT-p66":["A200E","T294V","V365I","V371L"],"gp120":["N3K","-4N","Q34H","V40I","N57E","-105N","-106F","-109S","-110T","-112N","S116T","-119S","-120E","-122E","-123E","Q230H","V305I","K307S","A318V","E335G","-368E","-370E","-379N","-381T","-382N","N383S","-384N","I395V","-435T","H472Y"],"gp41":["H53Q","D129N","N133S","R214G","T290A","Q323L","L340F"],"nef":["A50D","A83E","Y102H","K104Q","K105E","T133I","M148V","A156L","M173I","E174D","E176P","D177E","R194T","E197V"],"p17":["K69G","A118T","-126S","-127Q","-128I"],"p2":["Q6H"],"p24":["T110N","G116A","S120G","P123A","I135V","S200T","A204G"],"pro":["G17E","E35D","K41R","I64M"],"rev":["A15V","E68S","I102V"],"tat":["C31V","L36I"],"vif":["D37N","L39V","Q105H","K160R"],"vpr":["I84T"],"vpu":["Q2K","A8S"]},"labels":{"aa":"INT: R14K, S119G, T122I, V259I; RT-p51: A200E, T294V, V365I, V371L; RT-p66: A200E, T294V, V365I, V371L; gp120: N3K, -4N, Q34H, V40I, N57E, -105N, -106F, -109S, -110T, -112N, S116T, -119S, -120E, -122E, -123E, Q230H, V305I, K307S, A318V, E335G, -368E, -370E, -379N, -381T, -382N, N383S, -384N, I395V, -435T, H472Y; gp41: H53Q, D129N, N133S, R214G, T290A, Q323L, L340F; nef: A50D, A83E, Y102H, K104Q, K105E, T133I, M148V, A156L, M173I, E174D, E176P, D177E, R194T, E197V; p17: K69G, A118T, -126S, -127Q, -128I; p2: Q6H; p24: T110N, G116A, S120G, P123A, I135V, S200T, A204G; pro: G17E, E35D, K41R, I64M; rev: A15V, E68S, I102V; tat: C31V, L36I; vif: D37N, L39V, Q105H, K160R; vpr: I84T; vpu: Q2K, 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L63I; RT-p51: D123S, V135I, E138A, F171Y, R211S, S251N, A272G, V276T, K357R, T369A, V371A, K395R; RT-p66: D123S, V135I, E138A, F171Y, R211S, S251N, A272G, V276T, K357R, T369A, V371A, K395R, Q520L, K524G, E527G; gp120: A2G, -3Q, E4N, S52R, H57P, -105K, -106N, -107T, N108S, -109D, -110A, -111N, -112M, -115N, -116E, -126I, Y145H, K150R, N158Q, A172T, K265R, A291T, T292N, G293D, D294I, D297N, T312S, T319I, H324Y, A334D, N335E, S336P, G351R, E361G, -379N, T380P, -382P, -384D, -386H, Q389T, Q412E, N437K; gp41: I24M, D109E, D113S, K122R, I124V, S125N, D133K, S157G, N166Q, I193V, I222T, F263L, L265S, A267L, A268G, G270S, V271S, E272L, L273K, L274G, G275L, S290A, I311T, W314G, V318I, I321V, I332T, L345I; nef: I10L, A33V, A49P, A50T, D54A, R71K, Y81F, H89F, P150S, E155K, D177E, V182I, R184T, S187R, R188S, F191V, R194K; p17: P66S, Y86F, M107L; p24: L83M, D128E, V191I, V230I; p6: S24A; pro: E35D, L63P, K70R; rev: S5G, E10A, E11D, C82S, C85-, C86-, E87-, G88-, C89-, G90-, T91-, S99G, I108S, S112T; tat: P3L, V29M, K51R, G57R, T58S, V69I, S87Q; vif: K36H, N37K, S46C, R47K, R92K, H110Y, K122Q, R130S, P156L, T159A, K167Q, K179R; vpu: S3P, A7S, V14I, K35I, K37R, R41K, D44N, R45K, -70Y, -71H, -76P, -77L"}}}]},{"name":"CRF02_AG_NODE_0000029","node_attrs":{"div":0.12235,"clade_membership":{"value":"CRF02_AG"}},"branch_attrs":{"mutations":{"nuc":["C467T","T602C","A978T","G1265A","A1278G","A1279G","A1461G","T1676C","G2363A","G3217A","G3220A","A3646G","C5062T","C5168T","G5537A","G5594A","T5796C","-6223A","A6581G","G6668A","-8104T","-8112G","A8424G","T8636A","A8904C","G8915T","T8947A"],"RT-p51":["V90I"],"RT-p66":["V90I"],"gp120":["-105D","N159E","M243V"],"gp41":["D133E","N166K"],"nef":["T28E","F85L","F202Y"],"p2":["I13-"],"p24":["N183G"],"pro":["K70R"],"tat":["R54H"],"vif":["N37G","T159I"],"vpu":["F27Y"]},"labels":{"aa":"RT-p51: V90I; RT-p66: V90I; gp120: -105D, N159E, M243V; gp41: D133E, N166K; nef: T28E, F85L, F202Y; p2: I13-; p24: N183G; pro: K70R; tat: R54H; vif: N37G, T159I; vpu: F27Y"}},"children":[{"name":"MN153486","node_attrs":{"div":0.172,"accession":"MN153486","clade_membership":{"value":"CRF02_AG"},"country":{"value":"CM"},"date":{"value":2008.0},"Strain_name":{"value":"08CMBDSH131"},"LANL_subtype":{"value":"CRF02_AG"}},"branch_attrs":{"mutations":{"nuc":["C193T","T201C","G205A","C213T","G214T","A286G","-303T","-304T","T308G","G365A","T396C","C456T","A470G","C471G","T485G","A500C","A509G","G518A","T525C","A576G","A592G","T593G","T596C","A609T","T641A","A645T","T655C","G656A","G696A","A704C","A705T","G785A","A1088T","A1093C","G1109A","A1142G","C1181A","G1192A","T1244C","A1292T","T1334C","T1335C","T1362C","A1382C","C1385T","-1455A","-1456G","-1457T","T1481C","C1490A","G1553A","G1562A","T1574C","G1589A","C1610A","A1673G","G1687A","C1693T","A1694G","A1701T","T1741C","-1746T","-1747C","-1748C","T1752C","T1754-","C1755-","C1756-","A1766G","G1839A","A1841T","C1865T","A1903C","A1988T","A2038G","A2056G","G2074A","T2083C","T2104C","A2113C","A2203G","G2215A","A2293G","C2335T","C2386T","C2452A","T2453C","A2459G","G2462A","T2488C","G2518A","G2539A","A2545G","C2596T","A2599G","A2629G","T2654C","G2686A","G2707A","G2710A","A2715G","C2749T","C2797A","G2837A","A2839C","C2930T","C2953T","A3028G","A3031C","C3100T","A3165-","T3170G","T3175A","A3230G","C3232T","G3236A","C3253T","A3302C","T3303A","C3322A","T3358G","C3359T","T3380C","T3399C","C3405G","T3433C","T3436C","G3439A","G3448A","T3450A","C3525G","C3542T","T3644A","C3649T","G3664A","G3667A","C3692T","A3703G","G3718A","C3751T","G3768A","A3781T","G3808T","G3846A","C3889T","A3901G","T3904C","T3962A","T3970C","G4063C","T4079C","G4105A","C4123T","G4264A","C4288T","T4428C","A4525G","T4656C","C4679G","T4682C","A4696G","T4702A","A4721G","A4722T","T4724C","G4726A","A4736G","T4738C","T4757C","C4761T","G4855A","T4940G","T4957C","G4968A","T4985C","A5005G","T5018C","A5055G","C5056T","C5102T","G5140A","G5146A","A5161T","A5268C","G5276C","T5314C","T5356A","G5382T","G5385A","C5393A","G5396A","C5412T","G5444A","C5454T","T5462A","G5463A","A5484G","C5491T","C5538T","A5544C","C5559T","C5563G","G5566A","A5567G","T5568C","C5569T","A5574G","A5587G","A5603T","G5620T","A5621G","G5626C","C5627T","G5668A","T5670A","T5687A","G5700A","A5711G","A5728T","G5729T","T5739A","G5748T","C5793T","A5804G","A5806G","-5812G","C5833G","G5838T","A5840T","T5847C","G5848C","T5857-","G5858-","C5859-","T5860-","-5862C","-5863A","-5864G","-5869A","T5911A","G5915A","G5954A","A5957C","G5972A","G6009A","T6025A","A6030T","C6052T","G6055A","A6065G","T6151A","-6163T","-6164A","-6165C","-6166T","-6167G","-6169T","C6181-","A6186-","C6190-","-6222A","-6225G","-6226A","-6229T","A6232G","C6256T","A6262G","C6263A","T6271C","G6274A","G6284A","A6323G","T6325A","-6331G","-6333A","T6343C","C6369T","A6371G","G6392A","A6430C","G6451A","G6463A","A6465G","G6490A","A6500G","G6503A","G6575A","A6578G","A6580G","A6602T","A6604T","A6625G","A6635G","A6636T","A6639C","G6640A","A6648G","A6649G","G6669A","A6682G","G6689A","G6693A","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","T6733A","A6773G","A6775G","C6777A","G6779A","A6788G","A6789C","A6791G","T6793C","C6797T","A6799C","A6809G","A6810T","A6821G","G6823A","T6824A","C6826G","T6827G","-6834A","-6835T","C6838G","A6841C","C6855A","C6859A","C6862T","G6894T","T6896G","C6925T","-6956A","-6957C","-6980G","-6981A","-6982G","-6983A","A6989C","A6992G","-6996C","-6997T","-6998A","-6999G","-7000C","A7005C","C7006A","T7009A","A7030T","G7044A","G7054A","G7072A","T7130C","A7149C","T7150A","A7155G","A7157T","A7158C","T7159A","G7160A","A7162T","A7269C","A7313G","G7315A","G7322T","C7324T","T7325A","G7390A","G7440A","A7462T","T7604A","T7630G","G7640A","C7655T","A7668G","A7673G","G7688C","G7702A","G7712A","G7717A","A7763G","T7774C","C7775T","T7783C","G7790A","A7791G","T7843G","G7846A","A7880G","C7921T","C7936T","C7959T","T7968C","G7977A","C8005A","T8007G","C8009A","A8032T","C8037T","T8047C","C8048A","G8050A","C8051A","C8062T","T8092A","C8106T","G8133A","G8144A","T8167G","A8170G","G8184A","T8205C","C8213T","A8222T","T8256C","A8275G","T8287C","A8288T","T8290C","C8311T","G8354A","G8388A","C8425A","A8446G","G8476C","T8480C","T8483C","C8488G","A8489G","G8490A","G8499A","T8505G","G8506T","G8528A","A8531T","T8568C","G8570A","T8600C","C8601A","A8666C","G8753A","A8754T","C8755G","C8756T","G8762A","A8780T","T8789C","A8795T","G8798T","A8806C","A8812C","T8832C","G8868A","A8869C","C8873A","A8879G","G8885A","A8916G","A8922G","T8923C","A8930C","G8931A","G8933C","C8957T","T8972C","G8977A","A8978C","C8979A","G8991A"],"INT":["L2F","E11D","S24N","L63I","E96D","I218T"],"RT-p51":["E6D","K122E","D123N","I178M","E207G","E248N","E312D","S359A","S379G","V381I","M403Q","V435A","A437G"],"RT-p66":["E6D","K122E","D123N","I178M","E207G","E248N","E312D","S359A","S379G","V381I","M403Q","V435A","A437G","L452Q","T477S","H483Y","L517M","R558K"],"gp120":["A2-","D19E","E21K","D34N","T35P","V40I","S52N","H57Q","E59V","M67I","N71D","T78I","N108-","L137I","V144M","N157E","S160G","A172V","I173V","V180I","E204G","T216A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L2F, E11D, S24N, L63I, E96D, I218T; RT-p51: E6D, K122E, D123N, I178M, E207G, E248N, E312D, S359A, S379G, V381I, M403Q, V435A, A437G; RT-p66: E6D, K122E, D123N, I178M, E207G, E248N, E312D, S359A, S379G, V381I, M403Q, V435A, A437G, L452Q, T477S, H483Y, L517M, R558K; gp120: A2-, D19E, E21K, D34N, T35P, V40I, S52N, H57Q, E59V, M67I, N71D, T78I, N108-, L137I, V144M, N157E, S160G, A172V, I173V, V180I, E204G, T216A, V217I, E241K, I242V, T250S, I257M, N261V, K262T, K265R, V279I, R280H, -282H, -283I, K307E, T308K, E309K, K312A, T313A, Q315Y, T319V, K323E, H324K, F325V, -328K, A334D, N335K, S347I, F348V, -368T, -369N, -370E, -371T, -372N, -373H, -374A, -375A, -379A, E381D, -382R, T385-, R397N, M406I, N432T, N434S, N435S, T436N, H472P; gp41: I4V, V7F, F8I, S101T, D109E, D113N, K122R, I124V, E129Q, E137K, K154E, D163S, I193V, P219L, I222T, G225E, V235G, A245V, L249I, F263L, A268V, A281T, I301T, L304F, I307L, V318A, I329F, L340F; nef: Q15K, V16I, Q35R, S45T, A49G, A50T, A53T, C55V, E63D, L87I, E108D, T138C, E152D, E155A, N157T, E176T, D177E, K192E, R194A, E197N; p1: S9N; p17: L46V, E55D, M61I, T81A, Y86W, I92L, D102E, I104L, M107T, A121S, S124C, S129-; p2: -12V; p24: S14N, N121T, R154K, E187D; p6: S3N, P5L, T8S, I21T; p7: D48E; pro: R14K, I15L, E35D, I64L; rev: A8I, E10A, A15V, I18A, K20R, P30S, A54E, T62S, S67H, A68K, P72S, C82S, S99N, S107A, I108V; tat: E2D, P6H, S7N, Q63E, D64S, H65Y, K71E, T76I, P84S, S87P; vif: F39Y, S46C, R47K, V51A, R90K, I124T, V128I, N140S, T157V, G185E, R187H, H192L; vpr: E55A, I84N, A93S, G94S; vpu: E5*, A7L, V21I, K35R, R41L, D44E, R47S, L61Q, S62E, T63E, M65S, E66T, N69V, -72G, -73D, -74Y, -75D, -76V, -77F, D78V, 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E11D, S24N, M50I, I60V, D167E; RT-p51: V60I, E122K, D123E, I142V, P294T, D335G, K357R, A371V, E399D; RT-p66: V60I, E122K, D123E, I142V, P294T, D335G, K357R, A371V, E399D, V467I, V548I; gp120: K1N, E59T, N64Y, E78T, -106Y, -112T, -115T, E136V, Q142E, Y145H, S146A, K150R, S162E, K203E, E204N, M243K, I244V, I249F, E262K, A288S, D297N, K307R, I332T, N335Q, T345M, G351R, -370S, -372W, -374T, -379N, -380T, -381N, I396V, R401G, V414M, R416Q, E418V, D446N, R448K, K462Q; gp41: L4M, V7L, A14T, Q108W, E137I, S138A, S192T, N212S, P216V, D217A, R221G, D232N, S239N, D247E, S251N, L290A, N298K, I309V, G322A; nef: Q35R, A49P, A50F, G83A, Q107K, E108D, H116N, Y120F, T157N, E158K, I168M, C169S, Q170L, P176S, R178G, L191R; p17: L31M, L68I, T84V, S111K, Q113-; p24: S41T, E180D, S200T, A204G, P207Q, T210S; p6: S3N, P5L, E19-, I21G, S23T, -26P, P36S; p7: -13I; pro: V13I, K20R, P39S, I62V, L63T, E65D; rev: K39R, R50K, R66G, A68P, S107P, V108G, I109L, *117E; tat: L39I, N40T, P59S, T77A, V80E, T82P; vif: N22H, V31I, V66I, H73Q, K92R, I98V, H110Q, V129I, R130I, P131H, T157K, R181K, G185E; vpr: Q77N, V89G; vpu: F16L, T24S, F27L, I43L, E48D, T63A, -74H, -75N, -76P, D78G, -79Y, N81V","clade":"CRF26_A5U"}},"children":[{"name":"CRF26_A5U_NODE_0000001","node_attrs":{"div":0.11493,"clade_membership":{"value":"CRF26_A5U"}},"branch_attrs":{"mutations":{"p17":["K114-","T115-"]},"labels":{"aa":"p17: K114-, 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A21T, N24S, Q136K, G193E, I208L, D256E, D270N; RT-p51: K39N, T107S, A158S, S162A, S173A, A207D, E248D, A272P, K281R, D324E, R357K, A360T, K366R, A376V, V435A, F440Y; RT-p66: K39N, T107S, A158S, S162A, S173A, A207D, E248D, A272P, K281R, D324E, R357K, A360T, K366R, A376V, V435A, F440Y, T450S, E471D; gp120: N1S, T3N, D4-, N5-, I56V, T59P, Y64N, T104N, -107G, -109T, -111A, N113E, -114M, T115N, -124G, N132S, R150K, L151V, P155S, N157D, D159G, N160S, N161G, E183D, K201N, F205Y, P210Q, K212R, T216S, E240K, D251N, N261D, K265N, N267T, N272G, T275R, -282R, -283R, G284-, P285-, G286-, Q287-, S288-, F289-, Y290-, A291-, T292-, G293-, D294-, I295-, G296-, N297-, I298-, R299-, Q300-, R307K, E309D, K312M, K319T, Q320E, N334T, L341P, N358D, T366S, -368P, T371S, -373P, T380S, N381E, -382T, -383N, -384E, A412E, M414E, V418I, L424I, N434S, T437-, T439I, T471S, K472E, K474R, E479Q; gp41: G5A, A6T, Q32K, R46K, K77R, W108F, E110D, D113G, D129E, N133R, I137T, K154Q, D163S, F188C, V190I, I191M, S212Y, G215E, E225G, A245I, F263S, I264L, A290I, I301V, I321L, A325V, C326F, I329V, L330I; nef: E15A, T23A, P24I, D38E, F50D, L58V, E59Q, L76V, S88G, H89F, I133V, A151T, M168L, E174D, R188S, K192R, I194V; p1: N9H; p17: A15S, K28Q, E42D, G49S, E62G, F79Y, V84T, I107L, K111R, K112T, A119T, D121A, S126-, V128-; p2: -12V, I13-; p24: E75D, H87Q, I91V, A105P, T107S, T171A, D187E, R203K; p6: L5I, F15Y, -30P, K31R, -32E, S36N, L38P, V39S, N47K, L50W; p7: Q9P, I12V, K41Q; pro: L10M, I13V, S39A, K69H, K70R; rev: A15T, K30I, T62A, C63H, H82T, Q95I, S103P, G108D, E115K; tat: N7K, Y26H, K29V, P54S, S61N, I69V, K71E, Q76H, A77T, E80K; vif: T20A, K36Q, L59I, G60Q, A62G, I66V, T74P, D78E, H80Q, S86A, R93K, I128N, I130K, A137T, A155E, K157R, T159V, K179R, T188S; vpr: Y15F, P37L, H40Q, E48G, E55V, I61V; vpu: T2P, E5D, V13I, V21I, R37K, L82F"}}},{"name":"FM877777","node_attrs":{"div":0.15237,"accession":"FM877777","clade_membership":{"value":"CRF26_A5U"},"country":{"value":"CD"},"date":{"value":1997.0},"Strain_name":{"value":"97CD_KTB119"},"LANL_subtype":{"value":"CRF26_A5U"}},"branch_attrs":{"mutations":{"nuc":["T12G","G47A","A50G","G52A","T202G","C233T","A305T","G329A","C362T","G428A","C467T","C496G","A497G","A518G","A537C","A554G","C558A","A576G","A592T","T614G","A645G","G667A","-668G","-670A","C679-","C688T","A697G","G706A","G709A","-714A","-716G","-717G","G762A","G791A","A797G","G815A","T861G","A881T","A968G","C974T","G1085A","A1142G","T1143C","G1192A","A1205G","C1235T","C1330T","A1382G","T1421G","T1444C","-1459A","A1475G","C1490A","T1501C","-1503A","A1526G","C1556T","A1562G","G1568A","A1656C","A1692T","G1718C","A1720G","T1729C","C1767A","-1768T","-1783A","-1785T","-1786C","T1791C","A1889C","C1903T","G1912A","A1926G","A2018T","C2129T","A2140T","T2146C","A2203G","A2212G","A2273G","T2278C","C2299T","A2311G","A2419G","C2485T","G2519A","T2542G","A2548G","A2557G","G2567T","T2608C","G2612T","G2683A","G2725A","G2755A","G2833A","G2878A","A2896C","C2909G","G2914C","A2975C","A2984G","A3025G","A3028G","G3029A","C3055T","C3067A","G3097T","G3099A","G3127A","A3216G","A3241C","G3264A","A3293G","G3316A","T3319C","A3481G","T3505G","A3556G","A3578G","A3604G","A3607G","C3610T","G3631A","T3644G","A3684G","C3692T","A3733G","A3768G","T3865C","T3874C","A3925G","A3952G","A3955G","C4006T","A4060G","G4063A","A4219G","G4228A","A4376G","C4381T","A4403T","A4423C","A4433C","G4489T","G4631A","G4673A","T4674C","A4677G","A4693G","A4694G","G4695-","G4696-","T4702A","C4724T","T4769C","A4802G","G4805T","G4855A","C4871T","A4888G","C4890T","T4891C","A4900G","C4902T","G4982T","A5065G","C5091T","C5168T","G5330T","A5355C","C5358A","G5382T","T5391C","C5406T","T5415C","T5466C","C5478T","A5480C","A5491G","C5495A","C5530T","C5537A","C5538G","A5547C","A5548G","A5555G","G5556A","G5565A","C5585A","G5599T","C5611A","C5625T","T5653G","T5654C","T5659A","T5677G","T5686A","A5689G","A5703G","C5751A","-5812G","-5861A","C5862A","-5866A","C5869T","G6002A","A6008G","A6023G","A6024C","C6030T","-6171A","-6173A","-6175G","T6181G","A6185C","C6186A","-6187A","-6189C","C6190-","A6191-","A6192-","A6194-","-6200G","-6201T","-6202A","-6203G","-6204G","-6205G","-6206A","-6207C","-6208C","-6209A","-6210C","-6211A","-6212G","-6213C","-6214A","-6215G","-6216A","-6217G","-6218A","-6219A","-6220C","A6222T","-6223A","-6225C","A6229C","C6241T","G6267A","G6280A","A6335G","-6340T","A6349G","A6403T","C6412T","T6454C","G6463A","T6466C","A6476T","A6478G","G6480A","C6483T","A6488C","A6525G","A6553G","G6569A","A6576G","G6583A","A6595G","A6636C","A6638C","A6648G","T6652C","A6682G","A6734G","T6735A","G6743A","A6751G","C6769T","T6781G","A6800C","G6803A","A6820G","-6833T","A6844G","C6849T","A6858C","T6932A","G6935A","G6936A","C6937A","A6956C","-6966C","-6972A","-6973T","-6976G","-6977A","-6978C","-6979C","-6980C","-6981A","-6982G","-6983G","-6984C","-6985A","C6991T","G7094A","A7124C","A7126G","A7148G","T7150C","A7155G","A7158G","C7164A","A7177G","T7204C","G7225A","A7255G","G7315A","C7322A","T7324G","A7396G","A7463C","C7486T","G7495A","G7513T","G7524A","A7525G","A7531G","A7590C","A7629G","C7678T","A7687T","C7690G","A7700G","G7717A","G7720A","A7722T","A7741G","G7807A","A7818G","A7820G","T7821C","A7832G","A7834G","G7862A","A7885G","G7949C","C7953A","G7962A","G7985A","A8023G","G8036T","C8037T","T8159A","G8160A","T8172C","T8203C","A8219G","A8271G","T8281G","A8282G","G8283C","A8288T","C8291A","C8293T","A8305G","C8351A","T8387G","A8400T","G8402A","A8406C","G8446A","T8456G","A8465G","-8490T","C8491T","T8492C","T8495C","A8564G","C8594G","T8640C","T8700A","A8718T","A8719G","T8720C","A8739G","T8786A","C8794A","A8858G","G8864T","T8870C","T8887A","G8888A","A8892C","C8904A","A8906G","A8909G","G8914T","A8922T","A8924G","T8935A","G8936A","T8939C","C8966A","A8967G","A8970C","G8971T","A8980G","C8989T","T8993C","G8994A","T9019G","T9097G","A9128G","G9132A","A9135G","G9137A"],"INT":["I50M","I201V","T210S","Q216H","I220L","D286N"],"RT-p51":["I60V","V142I","A158S","S251N","T294P","K297E","D312N","D324E","Q334H","G335E","K374R","R390K","T400A","V435I"],"RT-p66":["I60V","V142I","A158S","S251N","T294P","K297E","D312N","D324E","Q334H","G335E","K374R","R390K","T400A","V435I","I495V","L517V","K530R","K558R"],"gp120":["T3K","D4E","D50N","N52D","N57A","T59I","-107K","-109K","-111Q","N113V","-114G","-116T","-117A","-118E","-119N","-120I","-121T","-122D","E125-","R138K","N157D","N161D","E162S","E183D","T208S","G209E","P210L","K212Q","K224R","E239K","E241G","N261A","K262Q","K265R","H280R","D294E","Q315H","K316Q","V317I","P326S","T332I","Q335P","S360T","G361K","-368L","-373N","-375T","-376Q","-377A","-382E","-383N","T385-","N432D","N434S","N435S","T436N","T437N","T471N"],"gp41":["M4I","L7M","M54L","R74K","N96T","D109S","D129E","N133D","N140I","K172R","I173A","I177V","V187I","T192A","V216L","A217D","G220E","E228K","A245F","W286K","T306A","I321V","A322V","Q323R","C326W","R327A","I329F","L330I","F340L"],"nef":["M20L","P24T","R35K","D38E","P49S","L58V","F120I","N126C","I133V","A151D","E174D","M182K","K184Q","R188K","R191L","I194L","L198Q"],"p1":["N9H"],"p17":["M31I","A54G","I61M","I68L","L75I","T81A","Y86F","D93E","I104V","A118V","D121G","S124N","S125N","-127T"],"p2":["V7A"],"p24":["V11I","S44A","Q50H","M118I","R154K","T200I"],"p6":["E13D","N14S","M17T","T22I","-30M","-32E"],"p7":["I12T"],"pro":["T31P","K43R","T74S"],"rev":["P8S","E11A","R14E","R17K","Q24K","S34T","R46K","I59V","C63F","V104E"],"tat":["E2D","Q35P","I39V","T40N","R52W","P54Q","T58A","Q60R","P70Q","E80D","P82T","E85K"],"vif":["M29I","Y30H","I31V","K36R","G37-","F39Y","Q73H","R90K","D101G","L102S","Q105R","R132S","K160R"],"vpr":["I84L","A93S","S96P"],"vpu":["A7S","L16A","L18I","S24A","L27I","I28V","D48E","N69D"]},"labels":{"aa":"INT: I50M, I201V, T210S, Q216H, I220L, D286N; RT-p51: I60V, V142I, A158S, S251N, T294P, K297E, D312N, D324E, Q334H, G335E, K374R, R390K, T400A, V435I; RT-p66: I60V, V142I, A158S, S251N, T294P, K297E, D312N, D324E, Q334H, G335E, K374R, R390K, T400A, V435I, I495V, L517V, K530R, K558R; gp120: T3K, D4E, D50N, N52D, N57A, T59I, -107K, -109K, -111Q, N113V, -114G, -116T, -117A, -118E, -119N, -120I, -121T, -122D, E125-, R138K, N157D, N161D, E162S, E183D, T208S, G209E, P210L, K212Q, K224R, E239K, E241G, N261A, K262Q, K265R, H280R, D294E, Q315H, K316Q, V317I, P326S, T332I, Q335P, S360T, G361K, -368L, -373N, -375T, -376Q, -377A, -382E, -383N, T385-, N432D, N434S, N435S, T436N, T437N, T471N; gp41: M4I, L7M, M54L, R74K, N96T, D109S, D129E, N133D, N140I, K172R, I173A, I177V, V187I, T192A, V216L, A217D, G220E, E228K, A245F, W286K, T306A, I321V, A322V, Q323R, C326W, R327A, I329F, L330I, F340L; nef: M20L, P24T, R35K, D38E, P49S, L58V, F120I, N126C, I133V, A151D, E174D, M182K, K184Q, R188K, R191L, I194L, L198Q; p1: N9H; p17: M31I, A54G, I61M, I68L, L75I, T81A, Y86F, D93E, I104V, A118V, D121G, S124N, S125N, -127T; p2: V7A; p24: V11I, S44A, Q50H, M118I, R154K, T200I; p6: E13D, N14S, M17T, T22I, -30M, -32E; p7: I12T; pro: T31P, K43R, T74S; rev: P8S, E11A, R14E, R17K, Q24K, S34T, R46K, I59V, C63F, V104E; tat: E2D, Q35P, I39V, T40N, R52W, P54Q, T58A, Q60R, P70Q, E80D, P82T, E85K; vif: M29I, Y30H, I31V, K36R, G37-, F39Y, Q73H, R90K, D101G, L102S, Q105R, R132S, K160R; vpr: I84L, A93S, S96P; vpu: A7S, L16A, L18I, S24A, L27I, I28V, D48E, 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I31V, A91T, E96D, T122I, V135I; RT-p51: S105A, P176T, I178L, G196S, A200V, R211K, T215Y, P294T, D312T, K357R, V365I, A376T, R390K, T403A; RT-p66: S105A, P176T, I178L, G196S, A200V, R211K, T215Y, P294T, D312T, K357R, V365I, A376T, R390K, T403A, S491L, D511E, L517I; gp120: R18K, E21D, T23I, V56I, H77Q, T100I, -107N, N108T, -109S, -111H, -112S, -113N, -114S, -115S, -116S, -117T, -118Q, -119S, -120I, -121N, -122E, M133T, E136I, K138R, K150R, I156L, N157D, D159K, T160N, N161T, V172T, K203P, E204R, R224K, E241G, V242K, M243I, D251N, E262K, Q265L, N267T, T269I, D293E, S306N, E309L, V318A, H324K, N327K, N334T, L341P, H346L, G351A, S365G, -368W, -370N, -372P, -381N, -382G, D384-, T385-, T387I, V414I, M424I, N435G, S436T, T437N, I463L, K472R, R474K; gp41: I24L, K46Q, Q77K, T94A, S101T, T107S, D129N, T130I, N157D, N160S, D163N, T165S, N166H, K172R, I188F, S192T, L204V, N212S, G220R, R221G, I222T, S239N, L242F, Y284N, C326F, F340L; nef: S8R, V11P, V16I, A26T, E28Q, G29R, R40H, L58V, Y81F, H89F, 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L82V"}}},{"name":"GU201516","node_attrs":{"div":0.15535000000000002,"accession":"GU201516","clade_membership":{"value":"A2"},"country":{"value":"CM"},"date":{"value":2001.0},"Strain_name":{"value":"01CM_1445MV"},"LANL_subtype":{"value":"A2"}},"branch_attrs":{"mutations":{"nuc":["A412G","C426A","T466A","C482T","A497G","G508A","A530T","C531T","A541C","A543G","C544T","T567C","G595A","G608A","T635C","A645T","A653G","A656G","C666T","A697C","C707T","A725G","A764G","A779G","G821A","C884T","A941G","A1202C","G1256A","G1271T","C1280T","T1329A","C1331T","T1335C","A1343G","G1354C","A1404G","T1421C","G1443A","A1448C","C1460T","A1461G","G1487A","A1492C","C1571T","T1646C","T1653C","T1676C","T1682C","A1709G","T1722G","A1743-","C1744-","C1745-","-1746G","-1748T","C1755T","-1770A","-1771G","-1772A","-1773A","-1774A","-1783A","-1784A","-1785C","G1791A","A1804G","C1853T","T1873C","A1900G","C1903T","A1926G","T1954G","A1993G","G2001A","G2065A","A2215C","C2266T","C2456T","C2485T","C2488A","C2499T","C2589T","T2737C","A2764G","A2839G","A2875G","A2918C","G2932A","A2937G","C2978T","G2980A","A2985G","T3072C","A3088G","A3091G","A3097G","T3170A","C3175T","C3222T","A3259G","G3304A","T3358C","A3386C","C3399T","A3448G","G3457A","A3522G","C3541T","G3556A","T3567C","T3598C","A3665G","G3674A","G3686A","C3712T","T3755A","C3756G","G3766A","C3908T","G3925A","G4060A","G4063A","C4072T","G4267A","C4288T","G4353A","A4354C","T4471G","G4549A","C4569T","G4696A","T4697G","T4706C","A4709G","A4717T","G4735A","G4766A","G4769A","C4820A","G4864A","T4868C","A4895G","A4968T","G4981A","G5099A","G5143A","C5168T","G5226A","C5228T","C5250T","G5330A","G5382A","G5418A","A5432G","G5448T","A5461G","A5462T","G5463T","A5471G","T5472G","C5491T","A5561G","A5581G","C5584T","A5587G","G5602A","T5611C","A5613G","A5655C","G5692C","G5700A","A5701G","A5704C","G5775A","G5864-","A5865-","G5902A","T5944A","C5958G","G5965A","A6001T","A6023G","G6029A","G6079A","G6099A","A6120T","T6134C","T6155C","A6167G","T6169A","C6171T","C6172T","-6175A","-6176G","-6177A","-6178T","-6179A","-6180A","A6186C","-6187G","-6189A","C6190-","A6191-","A6192-","T6193-","A6194-","G6195-","C6196-","A6197-","T6199-","G6224-","A6232G","A6248T","A6249T","T6250A","A6254C","A6281G","A6304G","G6311A","G6323A","G6330A","A6333C","T6334G","A6335C","T6337G","-6339C","A6353C","A6354G","T6382C","G6391A","A6466G","A6488C","A6489G","C6534T","G6573A","G6577A","G6593A","T6598C","A6599T","G6731A","T6735A","T6760C","A6776G","A6781C","A6789T","C6790T","G6809A","A6818C","G6819A","A6820C","G6821A","A6822G","A6823C","-6830C","-6831C","-6832T","C6833A","C6834A","A6836G","A6837C","A6840C","A6858G","T6860C","A6921T","C6938T","T6943C","G6952A","-6956A","-6957C","-6962A","-6964C","-6967A","-6971A","-6973A","-6974A","-6976G","-6977A","-6978T","A6980G","-6981T","C6983T","A6986-","A6987C","C6991A","C6993G","C7008A","C7020A","G7026A","A7036G","C7107T","C7114T","T7117C","A7126G","A7129C","T7150G","-7151C","-7153C","A7154-","A7155-","C7156-","A7163T","A7177G","G7256A","T7323C","C7324T","A7345T","T7462G","C7498T","G7517A","G7519A","A7553C","C7576T","C7597T","G7621A","C7623A","G7628A","A7629G","G7631C","C7658G","A7660G","A7672G","C7690A","G7701A","G7702A","A7714C","T7748G","A7791G","G7857A","C7869T","A7874T","G7883A","A7918G","T7921G","A7937C","C7960A","G7962A","G7970A","G7992A","G8001C","G8005A","A8006G","C8047T","T8089C","T8097C","G8117A","A8118C","A8143G","C8147A","A8204G","G8208A","T8213G","A8219G","G8231A","T8243G","A8264C","G8276A","C8277T","G8304C","C8323T","A8335G","G8349A","G8354A","G8356T","A8364-","G8365-","A8367-","G8368-","C8369-","A8370-","T8371-","A8372-","G8373-","T8374-","G8375-","T8390C","C8455G","G8476T","A8478C","C8499T","T8504C","G8534T","T8568C","C8666A","C8676T","A8693G","T8720C","A8739G","A8744G","A8746T","G8787A","A8852G","A8893G","G8905A","G8933A","C8937T","G8945T","T8972C","G8977A","C8979A","T9012C","T9017G","T9095C","G9096T","G9099A","G9132A"],"INT":["M50I","G193D","D232E","A265V"],"RT-p51":["E40D","H121Y","T135I","T165I","S173T","K275Q","K281R","K297R","D312N","I326T","S359T","A376V","K431Q","A435V"],"RT-p66":["E40D","H121Y","T135I","T165I","S173T","K275Q","K281R","K297R","D312N","I326T","S359T","A376V","K431Q","A435V","K476R","K524E","E527K","V531I"],"gp120":["D4N","T35R","N57D","E59K","S82N","K89M","N105E","A106V","-107K","N108D","-109N","-111T","-112K","I126M","N132L","T134P","K143E","V153I","N161Q","S162P","N167R","E204K","K212R","A227V","G240E","E247K","I249F","D293N","I294K","T308A","E309D","D312V","E319K","R322H","E323S","-328A","K329T","N335S","S336P","Y356F","-368T","-370S","-372W","N378-","T380E","-381R","-382E","T385N","P389Q","R391K","T418I","N432K","-433R","N435D","T437S","V468I"],"gp41":["V7A","H53Q","V72I","I84L","T107N","D109S","E110Q","Q119E","D129E","R133K","E137D","L149V","D163S","R185K","A189V","I191F","V194I","F206L","N212R","P216L","G220E","E223K","G230D","R233T","I235V","L265S","E272T","L282I","I301V","S302N","F304V","T306A","A310T","W314G","I321L","A325I","R334T"],"nef":["G3S","W5L","S8-","S9-","I10-","V11-","A38G","S45I","S46R","P53S","E64S","D108E","I133V","Y135F","D149N","K184R","R188H","H199Y","E201D"],"p1":["S8P"],"p17":["K26R","L31M","F44Y","R58K","Q65H","P66S","T70V","I104L","H111Y","D121A"],"p2":["V7-","Q8-","N9-","T10-","N11-"],"p24":["E180D","S200T","G208A","S225G"],"p6":["L15V","T22A","-32N","-36H","P37T","A38P","I39T","K42R"],"p7":["Q9P"],"pro":["K43R","G68E","M89I"],"rev":["R14K","I16V","K30T","R41Q","Q51H","D53S","P67S","G90D","R99G","P100H"],"tat":["K19R","K24N","K29V","Y32W","G57R","N62S","I69V","P70S","K71E","Q76H","P84Q","E85K"],"vif":["G37E","Y44F","R50K","D78E","R93K","I128L","R132K","S186N"],"vpr":["G41D","N48D","T49I","A93T"],"vpu":["E29Q","K32E","I33L"]},"labels":{"aa":"INT: 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Y135F, D149N, K184R, R188H, H199Y, E201D; p1: S8P; p17: K26R, L31M, F44Y, R58K, Q65H, P66S, T70V, I104L, H111Y, D121A; p2: V7-, Q8-, N9-, T10-, N11-; p24: E180D, S200T, G208A, S225G; p6: L15V, T22A, -32N, -36H, P37T, A38P, I39T, K42R; p7: Q9P; pro: K43R, G68E, M89I; rev: R14K, I16V, K30T, R41Q, Q51H, D53S, P67S, G90D, R99G, P100H; tat: K19R, K24N, K29V, Y32W, G57R, N62S, I69V, P70S, K71E, Q76H, P84Q, E85K; vif: G37E, Y44F, R50K, D78E, R93K, I128L, R132K, S186N; vpr: G41D, N48D, T49I, A93T; vpu: E29Q, K32E, I33L"}}}]},{"name":"A2_NODE_0000002","node_attrs":{"div":0.11695,"clade_membership":{"value":"A2"}},"branch_attrs":{"mutations":{"nuc":["G279A","G480A","A562G","C734T","C1767-","A2612G","G3168A","A3565G","G3574A","C4428T","A5159G","C5263T","G5482A","T5483G","A6044G","-6175C","C6184T","-6187C","-6189C","-6198C","-6225A","A6464G","G6575A","C6636A","A6648C","-6956G","-6957A","A6980C","-6985A","-7151A","A7155G","A7790G","C7801A","C8189T","T8292G","T8387G","C8494A"],"RT-p51":["S173A","R358K"],"RT-p66":["S173A","R358K"],"gp120":["N64D","D159S","E241K","T261N","Q265P","-368E","-381E","-382S","-433S"],"gp41":["N166K","P216L","L330R"],"nef":["T51N"],"p17":["G49S","K76R"],"rev":["T114I"],"tat":["V36R"],"vpr":["M19V"]},"labels":{"aa":"RT-p51: S173A, R358K; RT-p66: S173A, R358K; gp120: N64D, D159S, E241K, T261N, Q265P, -368E, -381E, -382S, -433S; gp41: N166K, P216L, L330R; nef: T51N; p17: G49S, K76R; rev: T114I; tat: V36R; vpr: 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T91-, S92-, R99G, S103P; tat: S31C, R53K, Q63K, P75S; vif: K36T, Y44F, H48N, V51A, R63K, T74P, K92R, I98L, V102T, P131C, S132R, E134D, Q136P, L153I, R181K; vpr: A55T, I61T, I70T, Q77R, P96S; vpu: H5Q, I30V, -76L"}}}]},{"name":"CRF35_A1D_NODE_0000013","node_attrs":{"div":0.12825999999999999,"clade_membership":{"value":"CRF35_A1D"}},"branch_attrs":{"mutations":{"nuc":["A903G","G986A","A1123G","G1794A","A5431G","G5461A","C5469T","-6170G","-6171T","-6172C","C7164A"],"gp120":["H280R","T371-"],"gp41":["M24V"],"p24":["I58V","G120N","K131R"],"rev":["R14K"],"tat":["T19A","N23S"],"vpu":["-76L"]},"labels":{"aa":"gp120: H280R, T371-; gp41: M24V; p24: I58V, G120N, K131R; rev: R14K; tat: T19A, N23S; vpu: 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V29K"}},"children":[{"name":"AB703613","node_attrs":{"div":0.16343,"accession":"AB703613","clade_membership":{"value":"CRF35_A1D"},"country":{"value":"IR"},"date":{"value":2011.0},"Strain_name":{"value":"11IR.SYZ33F"},"LANL_subtype":{"value":"CRF35_A1D"}},"branch_attrs":{"mutations":{"nuc":["C435A","T479C","A495G","T525A","T575C","A585G","C586T","T635A","T662G","C679T","A699C","A712C","A735G","A762G","T771G","G776A","A810G","G980A","A986G","G1199A","C1214T","G1242A","T1280A","A1337G","A1340G","T1344C","A1350C","A1370C","T1444C","T1502C","G1725A","A1804G","G1835A","A1932G","G1972A","G2127A","A2140G","C2199T","A2233G","C2335T","A2374G","A2398G","G2431A","T2494C","A2519G","T2542C","A2592G","C2635A","C2653T","T2719C","C2720T","A2770G","T2829C","G2830A","G2932A","C3020A","A3037G","G3046A","T3118A","A3124G","T3207G","A3221G","C3252T","A3283G","A3292T","T3412A","T3436C","G3442A","C3653A","G3671A","A3675G","G3679A","A3756G","A3775C","G3793A","G3844A","T3856C","T3909A","A3979G","C4021G","A4054G","T4110C","C4144T","A4156G","T4282A","A4303G","A4333G","G4388T","A4399G","A4402G","G4631A","G4689A","G4695A","G4696A","A4708G","A4721G","C4728A","G4774A","A4951G","G4968A","A4988C","T4991C","A5005C","A5039G","C5050T","A5055G","C5102T","G5161A","T5237C","T5313C","A5335G","A5395G","G5448T","G5463A","T5467A","A5557G","C5563A","C5585A","G5602A","C5611T","G5692C","A5701G","G5712A","T5727C","A5737C","T5781C","T5808G","T5862C","A5866T","A5867-","A5868-","T5869-","T5878C","T5881A","A5926C","G5948A","A5957G","G5963A","A6159C","T6160G","T6171C","C6172T","-6174A","-6175T","-6176A","-6181T","C6187T","A6188G","C6190T","-6195C","-6196T","-6198C","-6199C","-6202A","-6203G","-6204C","-6205T","-6207C","-6208C","-6210A","A6222G","T6252C","A6275C","A6303G","A6318C","T6328A","A6330G","A6335G","G6336A","C6511T","G6550A","G6575A","A6596G","T6598A","A6647C","T6656G","C6661T","T6688C","C6717T","C6729G","A6730G","T6733G","C6758T","A6773G","G6774A","C6781A","A6797G","A6801G","T6808C","A6809G","C6810A","T6849A","C6850T","A6880G","A6934G","G6935A","-6956T","-6958T","G6965-","C6967-","C6970-","-6971G","-6972G","-6973C","-6974A","-6975G","-6976C","G6977A","A6992-","C6993-","A6999C","A7005G","C7008T","C7014A","T7015A","C7024T","T7047C","T7107A","T7147A","A7151G","A7155C","G7158A","A7164C","G7269A","G7307T","G7322T","A7328G","C7597T","C7603T","A7628G","A7713T","T7715G","A7772G","A7782G","T7796A","A7818G","T7827G","A7887G","T7888G","G7943A","A7978C","G7980A","C8104T","G8116A","C8123G","A8191G","T8209C","G8213A","A8264C","T8278G","A8284G","T8337A","G8338A","T8384A","A8396T","A8429C","A8459G","G8508A","G8534T","A8540G","C8568T","A8576T","T8595A","C8603A","A8617G","C8687T","T8740C","A8770T","A8780G","T8789G","T8795G","A8812C","A8837G","G8870A","A8929T","A8970G","G8981A"],"INT":["L45Q","I112T","A205S","I208M","D286N"],"RT-p51":["R11K","T35I","I142V","K166R","M245T","L309I","V371G","T376A","T386I","E399D"],"RT-p66":["R11K","T35I","I142V","K166R","M245T","L309I","V371G","T376A","T386I","E399D","Q520K","V526I","N554S"],"gp120":["V3A","E4D","N5-","A32T","T35A","V37M","N102T","-109I","-113M","-114R","-115E","M133T","K141Q","K150R","Q155P","D159G","S161D","E241K","N248E","T265P","C268G","A288V","T292R","D293E","H302Y","R307E","R315G","Q316R","T319E","I332N","G361S","-368Y","-371G","-373K","-374E","-375L","-376N","N378A","T380G","-381I","D384-","T385-","T387K","M398T","V418E","N433D","N434T","E436Q","N437T","R472K"],"gp41":["V2F","V7L","I9V","N109D","E137V","S138A","N160S","S165T","K172R","I175R","N195R","G214R","E225D","G226D","L274V","V304I","I321L","F325L","L345Q"],"nef":["E18D","G31E","V33A","A56T","E64D","F85I","K92R","V133T","Y143F","D149E","N157T","Q196L"],"p17":["L34I","T54A","L64I","T84V","N109K","A115V","T122P","K126T"],"p2":["V7A"],"p24":["I2V","I11V","S14A","I27V","L83I","V171T","T207P","E213D"],"p6":["G16R","K42R"],"pro":["V13I","K45R"],"rev":["Q24K","R32K","R86C","G90R","S92C","K115E"],"tat":["N7D","K24N","S61G","Q63K","P70Q"],"vif":["A35T","G37N","K41R","H48N","R63K","K122R","V128I","E134D","N140T","T155I","T157A","C192Y"],"vpr":["M19I","Y45H","I70T","Q77R"],"vpu":["L2S","E29Q","R32G","K44Q"]},"labels":{"aa":"INT: L45Q, I112T, A205S, I208M, D286N; RT-p51: R11K, T35I, I142V, K166R, M245T, L309I, V371G, T376A, T386I, E399D; RT-p66: R11K, T35I, I142V, K166R, M245T, L309I, V371G, T376A, T386I, E399D, Q520K, V526I, N554S; gp120: V3A, E4D, N5-, A32T, T35A, V37M, N102T, -109I, -113M, -114R, -115E, M133T, K141Q, K150R, Q155P, D159G, S161D, E241K, N248E, T265P, C268G, A288V, T292R, D293E, H302Y, R307E, R315G, Q316R, T319E, I332N, G361S, -368Y, -371G, -373K, -374E, -375L, -376N, N378A, T380G, -381I, D384-, T385-, T387K, M398T, V418E, N433D, N434T, E436Q, N437T, R472K; gp41: V2F, V7L, I9V, N109D, E137V, S138A, N160S, S165T, K172R, I175R, N195R, G214R, E225D, G226D, L274V, V304I, I321L, F325L, L345Q; nef: E18D, G31E, V33A, A56T, E64D, F85I, K92R, V133T, Y143F, D149E, N157T, Q196L; p17: L34I, T54A, L64I, T84V, N109K, A115V, T122P, K126T; p2: V7A; p24: I2V, I11V, S14A, I27V, L83I, V171T, T207P, E213D; p6: G16R, K42R; pro: V13I, K45R; rev: Q24K, R32K, R86C, G90R, S92C, K115E; tat: N7D, K24N, S61G, Q63K, P70Q; vif: A35T, G37N, K41R, H48N, R63K, K122R, V128I, E134D, N140T, T155I, T157A, C192Y; vpr: M19I, Y45H, I70T, Q77R; vpu: L2S, E29Q, R32G, K44Q"}}},{"name":"EF158042","node_attrs":{"div":0.15244,"accession":"EF158042","clade_membership":{"value":"CRF35_A1D"},"country":{"value":"AF"},"date":{"value":2005.0},"Strain_name":{"value":"05AF104"},"LANL_subtype":{"value":"CRF35_A1D"}},"branch_attrs":{"mutations":{"nuc":["A480G","T525C","C531T","A554G","A615G","A619G","A711-","A712-","G716-","T892C","A978C","C1243T","G1301A","G1355A","G1493A","A1580G","A1592G","A1670G","T1676C","-1746C","-1747C","-1748T","C1749-","C1750-","C1751-","A1794G","T1796C","C1807T","A2007G","A2126G","C2296T","G2320A","A2422G","C2499T","A2551G","A2617G","A2828G","C2848T","A2951G","C3023T","A3193G","G3205T","C3222G","T3262C","C3394A","G3398A","G3556A","T3559C","A3644G","G3664A","A3665G","G3674A","A3775G","A4175G","A4183C","G4243A","A4384G","G4673A","T4674C","T4730C","A4923C","C4943T","T4959G","T4982G","G5040A","A5215G","T5245C","C5251T","T5252C","C5293G","G5305A","T5357A","G5431A","A5447G","G5448A","T5478C","A5481G","G5482T","T5484G","A5548G","C5612T","T5613G","G5652A","G5671A","T5672C","T5688C","G5702A","G5711A","G5739A","T5748G","T5781A","C5911A","C5920T","T5953C","C5974T","T6025G","G6029A","A6067C","C6148T","T6160A","T6163C","G6170T","-6174C","-6175C","-6176T","-6181C","C6183A","C6184T","A6185T","A6186T","-6195A","-6196C","-6198A","-6199T","A6200T","-6202C","-6203A","-6204A","-6205C","-6207A","-6208G","-6210G","A6214T","A6215G","C6216A","G6217C","A6219T","G6314A","T6315C","C6317G","T6334G","A6379G","G6460A","A6478T","T6482C","A6490C","A6508G","A6525G","A6605G","A6628G","T6641A","C6660G","A6682G","G6693C","C6729T","A6732G","G6779A","C6812A","A6821G","A6875G","G6913A","C6937A","-6956A","-6958A","A6960T","-6966C","-6968A","-6969G","-6994A","-6995A","-6996A","-6997T","A7000C","A7005T","C7006A","A7066G","C7124A","A7135C","A7149G","A7154G","T7156A","A7161T","G7162A","T7408G","G7640A","T7666G","A7688G","G7712A","A7771G","A7773G","A7790G","G7791A","A7886C","C8047T","G8152A","A8314G","A8407G","A8424G","A8474C","A8484G","A8536G","G8573A","A8688C","C8702T","A8739G","T8747C","A8794T","A8819C","A8876G","T8947A","G8977A","C9047T"],"INT":["S134G","Q136H","I203M"],"RT-p51":["R11G","T135I","M245V","T286A","E370D","T376S","V435I"],"RT-p66":["R11G","T135I","M245V","T286A","E370D","T376S","V435I","I517V","K524E","G527K"],"gp120":["D19E","H57Q","E59K","K71N","N102K","-109F","-113N","-114S","-115N","-116K","-117S","-120I","-121D","-122M","-123K","-124E","V154T","Q155E","D159E","N160K","S210P","K212N","K224R","N251D","S263T","T269S","R280P","T292I","D293G","I294D","E309N","Q320K","K323E","I341V","-368K","N369I","-371A","-375E","-376E","S377L","N379S","-381N","-382D","-383N","D384V","L424I","N432R","N433V","N435-","N437S"],"gp41":["D113N","D121E","N129D","E137K","D157S","S163D","N195H"],"nef":["Q22R","K28E","I48V","E65G","F85L","N116H","E151V","E159D","F202Y"],"p17":["S49G","P66S","I94V","K95R","K126-"],"p24":["M54T"],"p6":["T39A","S43L"],"pro":["K70R"],"rev":["P67S","V102I"],"tat":["A19T","K24R","S31C","V36L","T58A"],"vif":["M29I","Y30H","N113H","L125V","S132R","A152T"],"vpr":["Y50H","I63M"],"vpu":["L4S","H5L","V22T","R32K","R35K","S47R","D58E"]},"labels":{"aa":"INT: 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D58E"}}}]}]},{"name":"CRF35_A1D_NODE_0000016","node_attrs":{"div":0.12886999999999998,"clade_membership":{"value":"CRF35_A1D"}},"branch_attrs":{"mutations":{"nuc":["T5384C","T5467A","-6173A","-6174A","-6175C","C6183-","C6189-","-6210A","A6283G","A6875G","C6949T","T8746A"],"gp120":["I341V"],"nef":["F135Y"],"tat":["L3P"]},"labels":{"aa":"gp120: I341V; nef: F135Y; tat: 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Y121D, E122K, T135I, T165I, M245T, K277R, P294S, V317A, T376A; RT-p66: Y121D, E122K, T135I, T165I, M245T, K277R, P294S, V317A, T376A, S468P, Q520K; gp120: D19E, Q54R, E59Q, T78E, N102T, -105N, -106A, -107N, -109D, T110S, -112T, -113N, -114N, -115D, -116S, -117K, -118I, -119E, -120D, -121M, -122V, -124G, Y145Q, Q155P, G158D, I243V, N251D, S263T, E309A, N311K, R315E, A318K, I332L, N335D, G351R, S365N, T366S, W367L, -368F, -370S, -371S, -372G, -373E, -374S, -375D, -376S, -377T, N379-, D384-, T385-, N432A, N434E, N437S, R472K; gp41: V7L, R46K, K56R, V72L, K77R, N107T, S109N, D113N, N126S, A151T, K172R, H209L, P213Q, D217G, G230D, H259R, I264S, A268R, V304I, E320D, N331H, R342G; nef: I10K, V11K, G12E, R17K, R19K, A23T, K28E, A56T, A60T, E62Q, Y81F, F85L, K94Q, E151A, A156D, L191F, K192T, R194K, Q196R; p1: K10N; p17: S9R, A15T, Q117K, A118T, S124-, K126G, -127K; p2: V7A; p24: Q50G, H87Q, R203K; p6: S3G, T22K; pro: I15L, L63A; rev: A15G, V16I, K30E, H82Q, R86Q, S103F; tat: A19P, K24N, V29I, 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I10K, V11I, G12E, P14T, V16I, I20M, Q22R, K28A, G29T, S45N, A84G, L85V, I101V, R104K, H116N, D149E, E152D, M182V, R188L, R194I, H196R, F202Y; p1: I5L; p17: R26K, K28Q, L31M, S49D, L68I, T115A, N124S; p24: I2V, V3M, A14N, A31G, S33N, M54L, H87Q, G120S; p6: T22V, K42R; p7: M1V, R7K, K10N; pro: V13I, K45R, L63S, I64M, K70R; rev: A15T, L22I, K32E, S34T, K39R, D53N, T94E, Q95G, G96-, V97-, G98-, R99-, S103P, S106P, S107H, K115Q; tat: N7D, T58S, Q60Y, S61N, K63E, P68H, S73P, Q78R, V80D; vif: M8L, V13I, R19K, N22H, M29K, V31I, G37N, F39V, R41K, Y44F, H48N, V51I, S52C, R67K, D78A, V85A, K92R, R93E, S95R, L109T, D113T, D117E, S130R, A137T, K176E; vpr: Q3R, P37I, I84V, R85P, V89G, S93P, S94G; vpu: S2R, I10T, L16I, I18L, V21I, K32R, K38R, E44K, I46L, R47G, D58E, D62A, E63A, L64I, A65M, D78-, N80-, N81-, 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V113I; RT-p51: T39K, S123D, T135I, I179V, A272P, T294P, M377T, T400A, D404E; RT-p66: T39K, S123D, T135I, I179V, A272P, T294P, M377T, T400A, D404E, G527E, D529E; gp120: S1N, -124G, K141R, K150R, N327-, T380A, R416K, T436A; gp41: I4M, R214E, I309V, I325A; nef: Q22R, I43V, I48T, N49A, H50A, P51T, S52N, R104Q, E108D, H116N, E151A, K155E, R178K, T180V; p24: P111L, K154R, G183N; p6: F15L, P24S; pro: K57R; rev: K32R; tat: N40K, G79R; vif: S130R, P183H; vpu: V13I, 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D25E, M50R, G59E, V72I, I84M, A124N, N134G, T206S, T218I, I234V; RT-p51: K39N, K49R, E122K, I135V, S162C, E177D, T200A, A207T, S211K, K281R, D291E, E297K, D312E, I326V, D335E, R356K, V376I, T377L, I380V, V381I, W410C, K431R, V435I; RT-p66: K39N, K49R, E122K, I135V, S162C, E177D, T200A, A207T, S211K, K281R, D291E, E297K, D312E, I326V, D335E, R356K, V376I, T377L, I380V, V381I, W410C, K431R, V435I, Q483K, S491P, R512K; gp120: E4D, D19E, E21R, D34E, V40I, A42V, E59G, E64K, N71D, Q86E, N108-, -123K, L137I, R141-, K142-, K143-, V144-, Y145-, S146-, L147-, F148-, Y149-, R150-, L151-, D152-, V153-, V154-, Q155-, I156-, N157-, N158-, N159-, N160-, S161-, S162-, Y163-, R164-, L165-, I166T, I173L, F195Y, P210L, E240G, I249L, D251N, T255N, P263S, K265T, Y290A, A291T, T292G, D294I, E309N, N311I, Q315K, K316R, K319G, Q320E, E323Q, -326K, -327N, T330I, N335S, S360T, G361A, T366S, -368N, T371-, P389Q, L425I, N433-, N435S, A436G, N437T, K462E, I463V, K474R; gp41: I24V, L54M, K56R, K77Q, K106R, S107T, E109A, Q119D, K122R, S125N, I130T, S133R, N157S, D163G, I193V, T208I, N212S, I222T, E225G, D232S, I235T, V238A, A243T, L282I, L290I, R294Q, I298T, T306A, I307V, I321V, Q323H, C326W, I329F, L340A; nef: G3N, S9R, I10R, P25V, E28T, Q35R, S45T, A49P, -53E, -54A, R71M, Y89F, I101P, Y120F, I133V, C142L, F143Y, D149E, P150Q, A151E, V153I, E155K, E176P, M182L, S187R, R188H, L191I, R194T, F202Y; p17: L31I, S49G, E55Q, M61I, K69Q, D93E, Q108K, Q113N, D121A, N124S, K127N, Q130H; p2: T8Q, N9Q, -10T, -11N, -12I, I13M; p24: Q4T, H12Y, A31G, S33N, I91A, L111P, I115V, E180D; p6: K31R, P36A, P49Q; p7: K10G; pro: L10V; rev: Q24K, R50E, D53N, S54A, S61N, P67S, E68K, L78I, P100H, S103P, V108D, I109L; tat: N7D, N12K, A21P, N23T, C31S, Q35P, Q54L, I69V, P70Q, P73S, T77A, S87Q; vif: G37K, F39Y, S52C, R67I, D78E, S86A, L109Q, D117E, Q127E, V128I, P177H, R181M, C192*; vpr: Q8H, L20I, I61T, V89T; vpu: T2S, E5Q, E29Q, K32R, L33I, K35R, Q36D, R41W, I43V, E44R, E56D, -69V, -70E, -71M, -72G, -73D, -74Y, -75N, -76L, -77L"}}},{"name":"KU168256","node_attrs":{"div":0.16321,"accession":"KU168256","clade_membership":{"value":"A1"},"country":{"value":"CD"},"date":{"value":2002.0},"Strain_name":{"value":"LA01AlPr"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["T10G","G49T","A66G","C93A","A149G","C150T","G162T","A171T","T301A","-304A","C435T","G495A","A521C","G524A","C531T","A548G","A585G","C586T","A653G","A660G","T662G","G702A","A725G","T763C","T808C","A810G","G821A","T852A","G908A","C974T","T978G","T992G","A1017C","A1022G","C1063T","T1094C","G1109A","C1115A","C1137T","T1181C","A1196G","C1220T","C1243T","G1256A","A1270C","G1271A","G1313T","T1334C","T1358C","A1359T","G1388A","G1404A","C1449G","A1450G","T1481C","A1499G","G1586C","C1613T","G1657A","A1670G","G1724T","-1746C","-1748T","T1749-","C1750-","C1751-","C1775G","A1776-","G1777-","G1778-","G1779-","A1780-","A1781-","A1783C","G1784T","-1785C","A1846G","A1907G","G1963A","A1966G","T1986A","T1987A","A2023C","T2071A","A2113G","A2127T","A2128G","A2211G","A2254G","C2299T","C2326T","T2365C","A2422G","T2440C","G2456T","G2509A","T2542C","T2581C","T2612G","C2635T","A2645G","A2665C","G2682A","G2705A","A2710G","T2776C","C2806T","G2833A","C2909G","G3029A","A3046C","G3093A","G3094A","A3097C","A3099G","C3159G","A3165G","C3178T","A3192G","T3222G","A3230G","G3250A","T3308C","A3334C","T3358C","G3385A","A3400G","G3448A","C3449A","A3451G","A3484G","G3490A","A3503G","T3517C","A3524G","T3544G","C3550T","C3567T","A3637G","T3644A","A3685G","G3694A","C3773T","T3779C","T3844C","T3904C","A3919G","T3943C","G3952A","A3964G","A3991G","C3995T","G3997A","T4135C","A4178G","C4201T","C4258A","A4419G","T4471C","A4567G","A4570T","G4573A","G4582A","C4645T","A4650C","A4694G","A4760G","C4761A","G4774A","A4781G","C4820T","G4870A","C4871T","A4878G","C4898T","C4911T","G4923A","C4925T","A4993C","G4995A","A5000C","T5018C","C5034T","A5049G","C5052T","C5056G","C5062T","T5084C","A5134T","A5136C","G5137A","A5150C","T5152G","G5179A","G5185A","A5191G","T5203C","A5210C","C5221T","C5242T","T5252C","C5280T","T5293G","C5303T","G5308A","G5330A","C5342T","C5384T","G5403T","A5447G","G5448C","A5471G","T5472G","A5494C","A5495G","A5496C","C5513T","T5515C","A5537G","G5566A","T5600C","T5611A","C5625T","T5626G","G5668A","A5699G","A5703G","A5720G","A5734C","G5741A","C5795A","T5827C","A5828G","C5833T","A5840C","A5843G","G5861-","C5862-","A5863-","A5865G","A5867C","C5869A","T5901C","A5916T","T5944C","C5974T","T5980C","C6004T","T6025A","A6030T","A6031T","G6037A","C6052T","A6065C","A6066C","A6098G","C6116T","A6131C","T6154C","A6158G","A6164C","G6165A","C6166T","-6167G","-6171T","-6174C","-6177G","-6178T","-6179G","-6180A","C6184T","-6186T","-6195A","-6196T","-6198A","-6199T","-6201G","C6202T","-6203C","-6204C","-6205C","-6207A","-6208C","-6209A","-6210T","-6211C","-6213C","-6214A","-6215A","-6216A","-6217T","-6218G","-6219A","A6222T","A6277G","T6287C","G6311A","-6317G","T6322C","A6324G","A6330G","-6346T","A6456C","T6457A","T6460G","G6463A","G6464A","A6465G","A6489G","A6544G","G6547A","C6563T","T6586C","C6613A","C6619A","A6620T","A6628G","A6636T","G6638A","A6649T","A6654C","A6686G","-6689A","A6706T","A6718C","A6728G","G6732A","A6748C","A6754C","C6758T","A6764G","A6765T","T6766G","G6771A","G6774A","A6800C","C6807T","T6808G","G6809C","A6811C","C6826T","T6828G","T6829G","A6841G","A6854G","A6857C","A6858C","A6868G","T6875A","T6916C","-6956C","-6963A","C6964T","-6967A","-6969C","-6970A","-6972G","-6973C","-6974C","-6975T","-6976G","A6977G","A6978T","A6990G","A6996G","A7001-","A7002-","T7003-","G7004-","A7005-","C7006-","C7008A","T7009C","C7084T","A7132G","C7134T","G7147T","G7160A","A7161T","A7238C","C7264T","A7313T","G7315T","T7386C","C7407T","A7505C","A7553C","A7589G","C7597T","T7618C","G7627A","T7630G","G7631C","T7642A","T7656A","C7678T","G7688A","A7689G","A7700G","G7701A","A7714C","G7769A","A7816T","T7877G","A7882C","A7883T","A7903T","G7918A","C7932T","T7948A","G7961A","G7995A","A7998T","A8011C","A8023G","C8077T","A8093G","T8159G","A8188G","C8294A","C8311A","A8323C","A8338G","T8348A","A8364C","A8372G","G8373C","T8374C","C8413A","A8425T","G8436C","C8460T","A8484-","C8485-","A8486-","A8493-","C8494-","T8495-","A8496C","T8498G","C8507T","T8511C","G8512A","A8519C","C8521A","A8531G","G8537T","C8552T","G8561A","C8568T","A8604G","T8646C","C8652A","G8664C","C8666G","A8797G","A8834G","T8864A","G8894A","C8904A","A8918G","A8922G","A8930T","T8939C","G8977A","A8978C","C8979A","T9014G","A9042G","T9095G","G9134T","A9151G","C9178A"],"INT":["I135V","K215R"],"RT-p51":["T11M","K39R","D121Y","D123G","S173A","M184V","G196E","E204K","P272A","D312N","G333E","Q334H","D335G","A355G","K357R","K366R","V376G","S379G","Y405H","E413D","V435M"],"RT-p66":["T11M","K39R","D121Y","D123G","S173A","M184V","G196E","E204K","P272A","D312N","G333E","Q334H","D335G","A355G","K357R","K366R","V376G","S379G","Y405H","E413D","V435M","L452M","T470A","T477A","S491L","L517I"],"gp120":["A3G","E4Q","N5-","V16A","E21V","N57K","E59V","N71P","S82G","K93Q","N102D","T104H","-10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I135V, K215R; RT-p51: T11M, K39R, D121Y, D123G, S173A, M184V, G196E, E204K, P272A, D312N, G333E, Q334H, D335G, A355G, K357R, K366R, V376G, S379G, Y405H, E413D, V435M; RT-p66: T11M, K39R, D121Y, D123G, S173A, M184V, G196E, E204K, P272A, D312N, G333E, Q334H, D335G, A355G, K357R, K366R, V376G, S379G, Y405H, E413D, V435M, L452M, T470A, T477A, S491L, L517I; gp120: A3G, E4Q, N5-, V16A, E21V, N57K, E59V, N71P, S82G, K93Q, N102D, T104H, -105D, -106N, -107I, -109N, -110G, -111N, -112T, -113T, -114N, -115S, -116P, -117N, -118I, -119T, -120N, -121E, -122M, -123G, Y145H, V153I, Q155E, N157G, N159S, N160S, N201T, D202E, E204R, K212R, I256L, N261V, E262K, K265N, N267T, V279I, H280G, T292A, D294A, Q300H, H302Y, N304V, S306N, R307K, N312K, K316Q, A318V, K319H, Q320K, F325W, -328N, N334A, N335P, L341I, -368H, -370S, -372G, -373N, D384-, T385-, T427I, N432I, A436S, N437M, K462Q; gp41: L4F, V28A, S35F, I84L, N96A, E110Q, D113E, L118Q, D129S, S133D, E137D, A156T, S192A, I194L, T210I, G220R, R231K, D232I, I264V, W286G, I329L, H331N, L340F; nef: S8R, I10M, V11P, P24Q, E28V, A32P, H40Y, S45I, T48Q, A50S, T51-, N52-, W57Q, E59D, A60E, E65D, V85F, S88G, W102H, Q104K, D108Q, E152G, D174E, E176D, R188S, L191F, R194V; p1: S9N; p17: L31M, A54T, E62D, P66S, T84V, N109E, G123R, S126G; p24: I11T, S14A, V26A, I27V, S41T, L83V, H87Q, M96L, D128E, T171I, E180A, T210S, G225S; p6: S23P, K31-, D32-, R33K, Q35P; pro: N37D, L63Q; rev: S8A, S34T, R38Q, R50N, I55L, I59V, P77S, H82R, V104G, T114A; tat: P3L, E9D, K24S, Y32W, K40R, S46F, Y47H, Q54R, D64N, P75S, V80D; vif: T20I, N22H, G37D, L59I, R63K, R67T, S95N, I98V, D113N, Q136P, A137T, T155A, P156S, T157R, T159I, H183L, R184Q, M189R; vpr: Q11P, N16Q, Y50H, A59V, I63M; vpu: C7G, V21I, K31R, K38R, I43L, R45K, T63K, D79R, N80D, 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T2L"}},"children":[{"name":"A1_NODE_0000011","node_attrs":{"div":0.09874,"clade_membership":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["A380G","G518A","C636T","T782A","G803A","A820G","C823G","C1094T","G1256A","G1271T","A1292C","G1424A","G1568A","G1589A","C1903T","C2071T","A2127C","A2154G","G2156A","C2296T","G2311A","C2326T","A2350G","A2386T","C2499T","T2612G","G2683A","A2699G","C2728T","A2839C","G2947A","G3166A","G3217A","A3292G","G3442A","G3463A","T3754C","G3770A","G3772A","A4555G","A4558C","G4766A","G5361A","A5480C","G5635A","G5706A","T5731A","A5748T","-5824A","T5944A","C5998T","G6044A","-6175T","A6192C","T6193C","C6263T","G6303A","T6307G","A6338C","T6340G","G6464A","A6575G","-6835G","T6883A","-6994G","T7003C","C7020A","G7688C","T7921C","G7943A","A8011C","T8159G","T8172C","C8242G","A8424G","A8573G","A8915T"],"RT-p51":["K11T","K20R","V21I","T39K","T135I","S173A","I202V","E248D"],"RT-p66":["K11T","K20R","V21I","T39K","T135I","S173A","I202V","E248D","E514D","V559I"],"gp120":["N159S","D294I","T371-","-381E","-382S","V402T","R472K"],"gp41":["W286G"],"nef":["E151D","R194I"],"p24":["K30R","A31G"],"pro":["L63A"],"rev":["V104G"],"vpr":["G86S"],"vpu":["L42I","R47S","T63K"]},"labels":{"aa":"RT-p51: K11T, K20R, V21I, T39K, T135I, S173A, I202V, E248D; RT-p66: K11T, K20R, V21I, T39K, T135I, S173A, I202V, E248D, E514D, V559I; gp120: N159S, D294I, T371-, -381E, -382S, V402T, R472K; gp41: W286G; nef: E151D, R194I; p24: K30R, A31G; pro: L63A; rev: V104G; vpr: G86S; vpu: L42I, R47S, 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D312E; RT-p66: D312E; gp120: N102D, -105Y, -106N, -107V, -114S, K224R, I265N, N267T, Q300K, R307K, H324Y, T371N, -375Q, -376E, -377S, T436N, N437T, T439I, R472K; gp41: S102T, I130L, K144I, D148E, N195K, T210I, R214G, R221G, W286G, N302S, H331N; nef: E28S; p17: M61I, D93E; p2: T8Q, -11N; p6: I14L, L50S; pro: K20R, K45R; rev: E11D, K32R, K39R, T68E; tat: Q35P, K71E, P75S; vif: N22H, H73Q, K151R, R158K, P183H; vpr: V89G, D91N; vpu: L2S, L33V, D58E"}},"children":[{"name":"KY496622","node_attrs":{"div":0.16487,"accession":"KY496622","clade_membership":{"value":"A1"},"country":{"value":"ES"},"date":{"value":2015.0},"Strain_name":{"value":"100_117"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["G90T","C155G","C160T","C201T","T214A","-215A","-216C","-217A","-304T","T362C","A398G","G407A","A419G","G428A","C496A","G518A","G524A","A527G","C537A","C539T","A540C","T572C","A585G","C586T","A592T","T596G","C636G","A645T","A653G","T655C","T662G","G665A","A676G","G677A","G703A","A711G","C713T","G755A","A758G","A762G","C767T","T892C","G893A","G956A","A1034G","T1058C","A1076G","G1090C","C1103T","G1109A","C1137T","C1214T","A1289G","C1304T","G1311T","A1319T","T1329A","C1330G","A1349C","T1350A","G1418A","T1451G","A1452T","A1467G","A1497G","G1499A","A1546G","C1556T","G1586A","C1610T","A1656C","G1657A","G1664A","T1676C","G1687A","C1693T","A1694G","A1703T","G1718A","A1735G","A1742G","C1756T","G1777A","A1790G","A1832G","G1835A","A1839G","G1845A","A1846G","G1963A","C1985G","A2002G","G2008A","G2027A","T2035C","A2059G","A2075C","T2080A","T2149G","A2215C","A2241G","T2251C","C2353T","G2380A","C2499T","C2533T","T2542G","A2563C","C2589T","C2613T","T2679C","G2710A","C2828G","A2829T","A2839T","A2842G","T2890C","C2910G","G2914A","A2925G","A2977T","A3019G","T3045C","A3142G","A3192G","G3250A","A3251G","A3283G","A3286G","A3292G","G3304A","C3376T","G3379A","G3383A","G3385A","G3442A","C3449T","G3463A","T3497C","A3630G","A3658C","A3697G","T3742C","T3746C","T3754C","G3765A","G3766A","G3769A","G3770A","G3787A","A3808G","T3811C","C3892T","A3919G","A3979G","G4063A","C4129T","A4130C","A4159C","A4176G","A4178G","G4243A","C4258T","A4293G","T4321C","T4405C","A4661G","G4673A","G4677A","T4702G","G4708A","C4715T","G4723A","C4728A","G4765A","T4769G","G4774A","G4779A","G4856A","A4863G","G4864A","A4865T","C4890T","A4956C","C4976A","T4979A","A4980G","G4981A","T4982G","A5000G","C5050T","A5054C","A5056G","G5060A","T5072C","A5094G","C5102T","G5128A","G5140A","G5179A","T5203C","C5221A","T5224G","T5228C","T5237C","T5260C","T5292C","G5312A","A5335G","G5386A","C5412T","G5418A","A5426G","A5431G","T5436A","G5444A","C5445T","G5448T","T5451C","A5462G","G5463A","T5467A","C5469T","T5478C","C5548T","G5561A","T5602C","G5620C","T5628G","C5653G","T5654C","T5670A","T5688C","G5692C","A5694G","A5696G","A5702G","G5741A","T5778C","A5793G","G5800T","-5812A","-5817C","A5824G","T5829C","G5839A","A5849T","C5851G","A5866G","C5887T","T5956C","C5974T","A6023C","A6024C","T6025A","G6044A","C6101T","G6121A","A6130G","T6154C","-6167C","G6170C","-6175G","A6176G","T6178C","-6180C","T6184C","A6186G","-6195C","-6196T","-6198G","T6199C","-6201C","-6203C","-6204C","-6205T","-6206A","-6207A","-6208T","A6212-","G6225A","A6230G","C6247T","T6250C","A6275C","C6278A","A6286G","T6287C","A6292G","G6303A","C6317T","A6318C","G6333A","A6338C","T6340G","T6395A","G6442A","T6445C","A6456G","T6457A","C6487T","A6489G","G6490A","T6534C","C6559T","G6577A","C6603G","A6604T","A6605G","C6637G","T6643C","A6668G","A6684C","-6689A","A6715G","C6758T","T6763C","A6776G","A6780C","A6800G","A6801G","T6807C","G6809C","A6811G","C6822A","-6831A","-6836A","-6837A","-6838T","A6839-","A6840-","A6841-","C6850T","A6884G","C6885T","-6956G","-6957A","-6958G","A6960C","T6961C","G6962A","-6963A","C6964T","-6969C","-6994A","G6995-","A7000-","A7001-","A7002-","T7003-","C7008A","T7015C","A7046C","A7057G","G7058A","C7084T","C7088A","A7100C","G7101A","G7106A","C7114T","G7147T","A7152G","C7156T","A7168G","G7198A","G7199A","A7200T","C7201T","A7237T","T7243A","A7246G","C7264T","A7265T","G7285A","G7286A","A7290G","A7306G","G7310A","G7311C","A7373C","A7375G","A7439C","G7440A","G7517C","C7561A","C7574A","A7583C","A7589G","A7590C","G7594T","C7605A","C7625T","G7627T","G7633T","G7640C","C7642A","A7673G","T7681C","G7690C","A7691C","T7692A","G7712A","A7714G","A7744G","A7772G","T7774C","A7782G","C7795T","C7801T","T7825C","G7835A","T7853C","T7888G","A7929T","A7938G","T7948A","G7961A","A7992G","A7996C","G7997A","G8017C","A8018G","G8019A","A8023G","C8056T","C8065T","C8092T","A8093G","T8097C","G8105A","G8181T","A8188G","A8204G","T8209C","C8213T","A8222T","C8232T","G8234A","A8240G","A8255G","T8277C","T8279G","T8290C","T8292G","C8323A","T8332G","T8366A","T8371G","A8372G","T8374A","G8375A","G8377A","C8382T","A8402G","A8403C","G8404A","A8405G","C8415G","A8425G","A8426T","T8483C","C8507T","C8509T","C8510A","G8522A","A8531C","C8543A","G8555A","A8558T","A8564G","A8584T","G8588A","T8594G","G8597T","C8607T","A8608T","A8647G","C8648G","G8657A","A8666C","T8672A","C8676T","A8684T","G8744A","T8779A","T8789G","T8795A","G8816A","A8829T","A8834G","G8875A","A8879G","T8887G","C8904A","G8905A","C8906G","A8918G","C8921T","A8922C","C8934A","T8935A","G8936A","A8980T"],"INT":["S119P","N134S","I135V","K173R"],"RT-p51":["E40D","K49R","S123N","T135I","T165I","S173L","I195T","Q245V","E248D","A272G","K277R","V317A","K366R","T386A","M403I","E430K"],"RT-p66":["E40D","K49R","S123N","T135I","T165I","S173L","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S119P, N134S, I135V, K173R; RT-p51: E40D, K49R, S123N, T135I, T165I, S173L, I195T, Q245V, E248D, A272G, K277R, V317A, K366R, T386A, M403I, E430K; RT-p66: E40D, K49R, S123N, T135I, T165I, S173L, I195T, Q245V, E248D, A272G, K277R, V317A, K366R, T386A, M403I, E430K, S468P, K512R, R557K, V559I; gp120: N57P, E64N, Y105H, N108T, -109L, N110K, -111G, -115T, -116N, -117T, -118S, -120P, -121N, -122M, -123K, -124E, I126V, K127R, Q142K, Y145H, R150K, Q155S, S162Q, S181T, N201R, K212R, V227A, V242I, T250S, N251D, T261K, N272G, K277T, V279I, H280R, H302Y, T308A, E309A, K316G, V318A, N319Q, E323K, -328N, N335S, T344V, G361S, -368E, N369T, -372A, -374I, -379S, T385N, M398L, A402T, Q412K, R416Q, V418I, N433S, N434T, D449I, T471S, V478M, E479G; gp41: G3T, I24L, R46Q, V72L, L91I, T94P, N96A, S101Y, Q108Y, E110D, D113Q, I124V, Q129D, L130Q, E137K, N157D, N160S, V178I, H209L, N212S, G220R, D230G, R231S, G232S, S239D, I264V, L265S, A268T, G293I, I301V, L304F, I307L, A310V, V311I, N313G, I318V, I325T, C326G, L330R; nef: S8R, I10R, V11E, G12A, P14S, I20M, R21Q, A56V, E63D, Y81F, L85F, H89F, Y102W, E108D, V146E, D149E, S163C, E176D, R178K, I182R, R188K, F191L, R194L, L198K; p1: S9H; p17: A54K, L68I, K69Q, T84V, Y86F, C87W, L101V, I104L, I107T, N109K, K114R, G123E, S126G; p2: N9Q, -10S; p24: I11V, M54T, S120A, A194S, S207T; p6: S3N, P5L, E19G, I21M, P25L, R33K, V36A; p7: M1V, R11G, N27S; pro: T12A, V13I, K14R, G16E, L63A, V77I, I93L; rev: V16I, S34T, R38Q, R50Q, E57R, I59V, P70S, L73F, H82C, V104G, G111D, T114A; tat: V4I, Q17R, T19A, K24N, K29R, C31S, T58S, S62N, I74L, T77A, V80D; vif: M29I, V31I, G37D, F39C, R41K, S46N, H48N, G60E, D61E, R63K, V65I, R93D, I124L, S130R, R132E, T155V, K157R, T170A, R181K, G185E; vpr: H40Q, Y45H, I63T, V70I, Q77R, G94D; vpu: E5Q, C7W, L16A, E29Q, Y30C, K32R, R45K, A62L, T63Q, E66D, -79Y, N80D, N81L, L82G"}}},{"name":"JF683782","node_attrs":{"div":0.15607,"accession":"JF683782","clade_membership":{"value":"A1"},"country":{"value":"CY"},"date":{"value":2008.0},"Strain_name":{"value":"CY235"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["T377C","G378T","T396C","C426A","T479C","A495G","A497G","G518T","A520G","C531T","G542T","T571A","A654C","C657A","A692C","A714C","C723A","A724G","G770A","G785A","A806G","C851T","A891G","G899A","C917T","T944C","A968G","A980G","G987C","T988C","G1019A","A1050G","A1070G","A1073C","G1089A","G1173C","T1174A","T1175G","C1211T","A1241G","G1278A","G1279A","A1292C","A1295C","T1334C","T1358C","A1359T","G1405C","C1406T","T1439C","T1444C","A1452G","-1455A","-1456A","-1457C","A1459T","C1460A","A1463G","T1484C","G1498A","C1598T","A1701T","G1778C","G1779-","A1780-","A1781-","C1782-","A1783-","G1784-","G1785C","C1787T","A1790C","A1838G","A1907G","A1920G","A1951G","T1987C","T2087C","A2154G","G2155A","T2251A","T2257C","A2293G","A2455G","G2456C","A2462G","G2566A","C2584T","T2612G","A2626C","A2630G","C2653T","G2727A","C2728A","G2770A","C2857T","G2878A","A2884G","A2929G","A2938G","A2969G","A3001G","C3023T","A3027G","A3080C","T3112C","A3145G","G3166T","G3208A","T3222C","A3224T","A3264G","A3265G","A3293C","C3294T","T3328C","T3358C","T3399C","A3532G","C3541T","A3619T","T3634C","C3649T","G3664A","A3768G","A3808T","G3816A","A3817G","G3836A","A3866G","G3896A","G3952A","G3955A","A3964G","A3988G","G3989A","C4072T","G4092C","C4144T","T4151G","T4153C","A4175G","G4195A","T4240C","C4428T","A4495G","G4573A","T4606C","A4687G","G4695A","T4701A","T4702A","T4703A","G4774C","G4786A","T4799G","A4816G","A4826C","C4890A","A4895G","C4914T","C4939G","A4988T","A4993C","T5003C","C5006T","G5086A","A5167G","C5168T","T5188A","T5197C","A5215G","A5240G","T5245C","A5247C","G5276C","T5294C","C5333T","A5345G","T5356C","A5453T","C5457T","T5483A","C5496A","G5534A","A5563G","A5581G","G5619A","T5626A","C5651T","C5653T","C5659A","C5678T","A5689T","T5695A","A5696T","A5781G","A5793T","T5799C","T5801C","A5804T","A5805G","-5812G","-5817G","T5834C","C5862T","C5869A","T5870A","T5871C","G5917A","G5954A","A5955C","T5956A","G5963A","C5998T","A6001G","A6016G","T6046A","A6062C","A6063T","G6079A","T6151C","A6164G","C6166A","-6167T","G6170A","T6171A","C6172T","A6173G","A6174T","-6175C","-6180T","A6191T","-6195G","-6196C","-6198T","T6199A","A6200-","C6202-","-6208A","-6213T","-6214A","-6215C","-6216C","-6217A","-6218T","-6219G","-6220G","G6224-","G6225C","A6229T","A6230T","A6248G","A6251G","G6253A","A6259G","G6260A","C6263T","A6283T","G6311A","A6319C","G6336A","G6403A","C6412T","A6471G","C6477A","C6496T","A6502G","A6508T","G6572A","A6574T","A6576G","T6579C","A6636C","C6637T","C6660T","-6689G","G6693A","A6723T","A6734G","T6735A","A6736T","T6745C","A6757C","A6764G","T6766G","G6771A","A6773G","A6791G","G6796A","C6797A","A6798C","C6808T","G6830A","-6831G","T6849C","T6856A","A6857G","T6860C","C6928T","G6936A","C6937A","C6938T","G6948C","C6949A","-6963C","-6969G","A6974G","A6986G","A6987T","T6988C","G6990A","-6994T","-6996C","-6997A","-6998G","-6999G","A7000C","T7003C","G7004A","A7005C","C7006T","A7013T","C7014T","A7044G","T7045G","A7090G","G7094A","T7095G","T7107A","A7127C","A7129G","G7147A","A7148G","A7149G","A7154G","C7156A","T7159C","T7165A","C7174T","T7228C","A7231G","A7275G","G7289C","A7313C","A7447T","T7462G","C7463A","A7470G","A7532G","A7533G","A7626T","A7628G","G7631A","G7640A","C7655A","T7666C","G7688C","G7690A","A7691T","A7701C","G7712C","C7755A","A7799C","C7805T","A7886C","A7887G","A7891G","G7918A","A7931T","A7936G","A7974G","A8011C","C8044A","C8047T","G8055A","C8104T","T8113A","C8156A","G8158T","T8164C","C8165A","A8191G","G8241A","G8254A","A8273G","C8291A","C8323T","A8370T","G8385A","G8388A","T8390C","C8412-","C8413-","T8414-","A8417T","C8419T","G8421A","A8424G","A8426G","G8427A","A8429T","G8430A","T8431G","G8434T","C8437G","T8440C","C8443A","G8448A","T8451C","C8460G","G8464A","G8469A","T8470G"],"INT":["E11D","R14K","A21T","I31V","D41N","M60I","V72I","G106A","S119T","F126V","N134D","T218I"],"RT-p51":["K20R","D121H","S123D","S173A","E177D","I179V","S211K","I292V","K311R","I329L","K357N","V376A","M377L","K390R","T400L","V435A"],"RT-p66":["K20R","D121H","S123D","S173A","E177D","I179V","S211K","I292V","K311R","I329L","K357N","V376A","M377L","K390R","T400L","V435A","K558R"],"gp120":["A3V","N5K","L6T","D34T","V37M","N70L","S104G","N108S","-109I","-111N","N113Y","-115I","E125-","I126-","K127-","N132D","M133V","E136K","K143N","V153I","Q155H","S158-","N159-","N160-","S161-","N206S","T208K","Q218H","E240N","K241R","V242T","T269I","N272S","Y290F","N304E","S306N","K307E","T313A","Q315T","N319E","E323T","E326R","-329K","I332T","N334K","N335G","S336P","G361K","S365T","N370A","-372G","-374V","N378V","-379N","-381A","-382G","-383N","D384T","T387F","N397R","V414R","V418E","I425L","N432G","N434A","K474R","E479Q"],"gp41":["I4L","H53Q","L54M","K56R","K77G","Q108L","N109D","E110K","D113N","L118M","N133T","E137Q","A151E","N166H","K195R","I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E11D, R14K, A21T, I31V, D41N, M60I, V72I, G106A, S119T, F126V, N134D, T218I; RT-p51: K20R, D121H, S123D, S173A, E177D, I179V, S211K, I292V, K311R, I329L, K357N, V376A, M377L, K390R, T400L, V435A; RT-p66: K20R, D121H, S123D, S173A, E177D, I179V, S211K, I292V, K311R, I329L, K357N, V376A, M377L, K390R, T400L, V435A, K558R; gp120: A3V, N5K, L6T, D34T, V37M, N70L, S104G, N108S, -109I, -111N, N113Y, -115I, E125-, I126-, K127-, N132D, M133V, E136K, K143N, V153I, Q155H, S158-, N159-, N160-, S161-, N206S, T208K, Q218H, E240N, K241R, V242T, T269I, N272S, Y290F, N304E, S306N, K307E, T313A, Q315T, N319E, E323T, E326R, -329K, I332T, N334K, N335G, S336P, G361K, S365T, N370A, -372G, -374V, N378V, -379N, -381A, -382G, -383N, D384T, T387F, N397R, V414R, V418E, I425L, N432G, N434A, K474R, E479Q; gp41: I4L, H53Q, L54M, K56R, K77G, Q108L, N109D, E110K, D113N, L118M, N133T, E137Q, A151E, N166H, K195R, I210F, E224G, D247E, S251N, L285I, L288I, G293S, R324G, L330I; nef: I10L, E15K, V16I, A25V, A26T, A27E, G29R, V33Y, S34Q, Q35N, D36-, H40D, G41E, V43S; p17: A15S, L31M, E62G, P66S, K69N, F79Y, I107L, Q108K, K127Q, Q130R; p2: V7A, N9H, -10A, -12I, I13M; p24: M54V, V86P, M96I, T107A, Q114H, V148Q, G183N, E187D, T210S, G225A; p6: T8S, R33S, E34P, Q35-, V36-; p7: R11K; pro: K14E, N37D, K41R, L63P; rev: D7N, Y28F, K30E, I55L, P67S, H86C, C89S, S103Y, V104W, S106H, G111E, K115E; tat: N23S, Y26F, V36D, N40K, R53K, T58P, K63E, I69V, Q76R; vif: V7A, K34R, G37N, F39K, R63T, R67K, K77R, Q80H, L102M, H110Y, S118C, R132S, E134D, Q136P, T155A, R167K; vpr: H28Q, I46V, N48T, E58Q, I84T; vpu: C7S, A15V, L18I, T24I, I28L, Y30I, E60D, L61T, A62D, T63E, I65A, E66L, M67L, G68-, -69V, -70E, -71M, -72G, -73N, -74Y, -75D, -76P, -77G, D78V, 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Q174K, D250E; gp120: D34E, I126-, V153I, E240G, M243K, T308S, V418E, N433S; nef: Q22R, T23A, E63D, E151D; p17: K76R; p24: I11V, T207A; p6: T22A, P36-; rev: S107P; vif: A137T; vpr: E25D; vpu: V13I, 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G68-"}}},{"name":"MT942889","node_attrs":{"div":0.14769,"accession":"MT942889","clade_membership":{"value":"A1"},"country":{"value":"RW"},"date":{"value":2008.0},"Strain_name":{"value":"R3103M_175079_1"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["G161C","T214A","-215G","-217T","A301C","A302T","T303-","G386A","A389G","T396C","C426A","C471A","G495A","T506C","G518A","C537G","A540C","A554G","A557G","C558G","A576G","C583T","A585G","C586T","T614G","T635C","A638G","T662G","G665A","C679A","A711G","A714C","A743G","T774G","A806G","C823G","G837A","T892C","C917T","G920A","A968C","G1089A","G1139A","A1160G","A1192G","G1199A","A1267C","G1268A","G1279C","C1385T","C1406A","A1452C","-1455A","-1456A","-1457T","A1458-","A1459-","C1460-","G1474A","A1495G","G1508A","C1535T","G1543A","T1559C","A1642G","T1646C","G1661A","A1673G","A1694G","A1772G","G1777A","A1781T","-1785T","-1786C","C1787A","C1825T","C1826A","C1853T","A1894G","C1957T","A2002G","A2007G","C2095T","A2126G","A2127C","G2134A","A2185G","C2211T","A2212G","A2221G","A2227C","T2236C","A2273G","A2275G","C2326T","C2392T","T2393C","C2434T","T2443C","A2462G","C2503T","T2542G","A2617G","A2665C","A2734G","G2761A","T2776C","A2794G","G2809A","C2818A","A2828G","A2829T","C2831T","A2842G","A2884G","T2917C","G3010A","C3023T","A3058C","G3094A","G3162A","G3173A","A3192G","A3205C","G3211A","A3258G","A3292C","T3380G","G3398A","T3493C","G3494A","G3508A","T3517C","T3530C","C3542T","T3551C","T3634C","T3644G","A3651G","G3664A","A3665G","G3674A","T3746C","T3755C","C3756A","T3757G","G3772A","G3787A","T3799C","T3820C","G3825A","C3826T","T3844C","G3859A","T3865A","A3910G","C3977T","G3997A","T4024C","T4039C","G4060A","A4176G","T4177G","G4195A","A4213G","C4258T","A4285G","C4288T","T4412C","G4549A","G4573A","T4697G","T4738C","A4760T","G4779A","T4799A","C4826T","T4868C","A4877G","T4910C","C4914T","C4937A","C4965G","A4995G","A5004C","A5005C","T5018C","A5021C","G5036A","C5050A","C5056G","C5062A","A5089T","A5094G","A5096T","T5102C","G5128A","G5143A","T5162C","T5188A","G5212A","C5221T","C5237T","T5252C","A5269G","G5296A","A5302G","C5303T","A5400G","A5433C","G5444A","C5445T","T5466C","C5491A","C5496T","G5534A","G5545C","C5584T","A5607G","C5614T","G5620A","A5621C","A5622T","C5625T","C5659T","G5700A","C5707A","T5708G","G5717A","A5718G","A5734C","A5751G","T5781C","-5809G","-5810G","-5811G","-5824A","A5843C","G5858A","C5859T","T5860G","A5866C","C5869T","C5884A","T5911C","G5917T","T5924C","T5929C","C5958A","T5964A","G5965A","T6021G","A6022G","G6028A","A6030T","G6037A","G6046T","A6061C","A6066G","C6097T","C6116T","T6154C","-6165T","-6180T","A6186T","C6187T","C6189T","A6192C","-6196C","-6199C","-6201C","-6204C","-6205C","-6208T","-6210T","-6211C","-6214T","-6215A","-6216A","-6217T","-6220G","A6229C","A6234G","C6263A","T6271C","A6275C","A6286G","C6317G","T6322-","G6323-","A6324-","A6329G","T6337C","A6338C","G6339A","T6418C","C6445T","G6451A","G6457A","A6462G","G6463A","G6481A","A6576G","A6583G","G6593A","C6601A","C6618T","G6626A","C6632T","G6638A","G6640C","C6641A","A6646G","A6649C","T6652C","A6654C","A6659G","C6660T","A6695G","-6700C","-6701A","T6733A","A6773T","G6774T","A6775C","T6776A","C6777A","A6778C","G6779C","A6788G","A6790T","T6808C","A6810G","A6811T","C6812G","G6819A","A6821G","A6825G","C6826T","T6829C","-6830A","-6831G","-6832G","-6833A","-6834A","-6835C","A6836-","A6837-","C6838-","G6871A","G6894C","T6946C","-6956T","-6957A","-6958T","A6959C","-6963G","-6968T","A6971-","-6979A","-6980G","-6983T","-6984G","A6986C","A6987G","T6988A","A6989C","C6991G","A6992C","C6993T","-6994T","G6997A","C7020A","T7045C","G7058A","T7059C","A7066G","G7101A","T7117A","A7135C","A7149T","T7150A","T7153C","A7155G","A7160G","G7198A","G7225A","A7279G","G7289A","A7290C","A7373C","C7411T","C7429T","G7459A","G7517C","A7533G","T7609C","T7622A","G7627A","T7630A","T7642A","C7645T","C7678T","A7680G","A7711G","G7769T","G7790A","T7796A","A7826G","A7832G","A7880G","A7903G","G7918A","A7931G","A7943G","G7944T","T7948A","C7959T","A7986G","G7992A","G7997A","A7998C","G8017C","C8080A","A8119G","T8121G","A8142G","C8146G","T8159G","T8164C","T8171A","G8184A","T8196G","T8203C","G8212A","C8213G","G8254T","G8255A","A8258C","A8264T","C8323A","G8385C","T8390C","A8402G","A8408T","T8411A","C8412T","A8425C","T8462C","A8469G","G8503A","G8506A","C8507T","G8516A","G8522A","A8531T","G8534T","C8568T","T8595G","T8740C","A8746T","C8751T","A8762G","A8824C","A8859G","A8879G","G8905A","A8912C","A8915C","A8922C","T8923A","C8927A","C8928A","C8948T","A8980T","-9014G","T9073C","T9097G","-9108C"],"INT":["S17N","N134G"],"RT-p51":["K11A","T39M","E44D","I60V","S123G","Q245V","E250D","R356K","A360T","K366R","E370D","K388R","E399D","L429V","V435I"],"RT-p66":["K11A","T39M","E44D","S123G","Q245V","E250D","R356K","A360T","K366R","E370D","K388R","E399D","L429V","V435I","V467I","H483Y","L517V","N519S","K524E","S554Q"],"gp120":["A2M","E4D","E21D","T35K","V37K","I56R","E59V","E64N","K69N","N71S","-105D","-106M","-107R","T110-","E125-","K127-","N128-","L137I"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S17N, N134G; RT-p51: K11A, T39M, E44D, I60V, S123G, Q245V, E250D, R356K, A360T, K366R, E370D, K388R, E399D, L429V, V435I; RT-p66: K11A, T39M, E44D, S123G, Q245V, E250D, R356K, A360T, K366R, E370D, K388R, E399D, L429V, V435I, V467I, H483Y, L517V, N519S, K524E, S554Q; gp120: A2M, E4D, E21D, T35K, V37K, I56R, E59V, E64N, K69N, N71S, -105D, -106M, -107R, T110-, E125-, K127-, N128-, L137I, K141Q, Q155E, N157-, N159D, S162H, K203R, K241R, E247K, T255I, V258I, L260F, E262N, P263T, K265N, N267T, T269V, D294E, R307F, S308N, E309Q, K312D, K319S, Q320E, R322K, H324R, -326R, S347T, -368Y, N369H, -370S, T371N, P389Q, V402T, Q412P, R416K, N432I, N434S, T436E, N437S, E479T; gp41: I24L, V72L, K77R, S107T, N109E, D113E, N126S, A156S, D163N, S165T, I175V, I177V, I193V, T210A, R214V, P219L, E228G, G230D, D232T, L273R, K280R, W286G, L290I, R294Q, I298S, L304V, R317S, V318I, I319L, I321L, C326G; nef: E15Q, I20M, P24S, E28T, I43V, S52N, -53Y, -54V, C55-, A56-, E64D, L85V, I133T, Y135F, N161T, M173V, R188H, L191F, R194Q; p1: K4R; p17: L31M, L46I, A54T, M61I, L68V, K69Q, L75V, T81A, A83V, T84V, N109K, T115K, S126G, K127Q; p2: T8Q, N9Q, -10P, -11N; p24: L15V, A31G, V36I, M54T, E79D, G120S, K154R, Q179P, N183T; p6: R33K, E34D, -36A, P49L; p7: R3K, K10R, R26K; pro: L10I, K70R; rev: D7N, E10D, Y28C, K32S, S34T, R50N, E57Q, L78I, T91A, P100A, V104G, S106P, V108D, N116K; tat: L39I, R53K, P70S, I74M, G79W, V80D, P84S; vif: V51T, V65I, H110Y, D117E, Q127E, T137A, N140P, T155K, T157R, T159K, K168I, T170A, R181K, S186N; vpr: H28Q, H45Y, Y50H; vpu: E5N, L34R, R37K, I43L, T63K, -69N, -70Y, -71D, -72L, -73G, -74N, -75A, -76N, -77N, D81-"}}}]},{"name":"A1_NODE_0000020","node_attrs":{"div":0.09127999999999999,"clade_membership":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["A706G","A1350G","C2845A","T3577C","G3718A","G3796A","A3907G","T3943C","G4078A","A5795C","G5802T","G6333A","A6636C","A6800C","G6955-","A6959-","G8561A","T8913C","T8923G","G8929A"],"RT-p66":["V60I"],"gp120":["K316Q","N334T","N437T"],"gp41":["N109D","C326G"],"nef":["E28T"],"vpr":["I63T"],"vpu":["T2S"]},"labels":{"aa":"RT-p66: V60I; gp120: K316Q, N334T, N437T; gp41: N109D, C326G; nef: E28T; vpr: I63T; vpu: 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R20K, N134G; RT-p51: V21I, I292V, R356K, T386A; RT-p66: V21I, I292V, R356K, T386A, H483Y; gp120: D105N, -113N, E204K, R243I, D446N; gp41: K77R, S125D, K172R, L244I, V271L, I298N, I321V, H331N; nef: S8R, V16I, I20M, M182R, K192R, R194L; p17: S49G, M61L, R76K; p24: S14A, L15V, S200T; p6: D32-; p7: R7K; rev: K30E, T62D, C89I; tat: Q76R; vif: R63K, K160R; vpr: T63I; vpu: V65I, 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R14K, Q216H; RT-p51: K43N, T135I, I142T, I178L, I179T, T200A, S211N, K245E, A272P, D291E, F346H, K357Q, M377T, K395R, V435A; RT-p66: K43N, T135I, I142T, I178L, I179T, T200A, S211N, K245E, A272P, D291E, F346H, K357Q, M377T, K395R, V435A, K465R, V467I, E514D; gp120: A3V, E4D, N5K, E34N, T35R, V37A, N52D, N57P, N102K, -106A, -107K, -109E, -111K, -112F, -114E, M126L, K141T, K150R, I153V, N159D, N160-, S161-, T174K, K199R, K203N, L210T, K212T, G240E, N261V, N267R, T269I, P271V, N272S, N274K, K277T, H280R, A288T, D294A, Q300E, N304T, S306N, R307G, N311K, K312G, V317I, A318V, E323K, -328T, K329T, I332S, T334N, N335S, I343V, G361K, -368P, -369Q, -370S, -379H, -382D, D384G, T385N, I386L, I395L, M398L, V402A, Q412P, V414N, R416S, E418V, S433T, N434G, T436N, T439I, L466I, V468I, R472K; gp41: V2A, G3L, I4A, V7F, A14T, T25A, H53Q, K56R, S101A, S107T, Y108Q, N114S, D129Q, I130T, K133E, I135L, E137A, D148E, N160S, D163N, S165T, S192A, I193L, N212S, R221E, Q229P, D232T, F263C, G286K, L290V, R294Q, 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N81-"}}},{"name":"A1_NODE_0000025","node_attrs":{"div":0.13627999999999998,"clade_membership":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["T95G","C96T","G119T","T227A","A359G","C426T","A540C","A611T","T641C","C657-","A658-","C731T","A752G","A759T","G761T","G791A","C827T","G899A","C1061T","A1067G","A1074G","G1090C","A1142G","A1193G","A1196G","G1350A","G1394A","G1404A","A1412G","T1444C","G1586A","G1664A","T1682C","A1736-","C1745-","-1746G","-1748T","T1749C","A1774G","-1785A","-1786A","C1903T","T1986C","C2326T","T2365C","A2386G","T2449C","G2463A","A2500T","G2509A","G2524A","T2527C","T2536C","A2579T","G2602T","A2699G","G2710A","C2715A","T2716G","C2728A","G2755A","T2873C","G2878A","G2914A","A2975C","G3094A","A3151G","A3165G","T3170G","T3207C","G3211A","G3221A","C3223G","T3253C","A3264G","G3398A","T3412C","G3448A","G3463A","A3481T","G3675C","A3685G","A3727G","C3889T","C3892T","A3979G","G4060A","A4084G","C4180T","C4181A","C4534T","A4546C","A4625G","A4650C","T4656A","T4697A","T4702C","G4723A","A4735G","G4786A","C4826A","T4868C","T4938A","G4968A","G4975T","A4980T","A4994G","T5003C","A5021G","A5048G","C5062G","G5075A","G5087A","A5093G","G5128A","A5136C","G5143A","T5203C","T5371G","T5391C","C5412T","T5439A","C5479T","C5496A","T5600C","T5604G","C5612T","G5620T","C5658A","T5670A","A5689C","G5700A","G5706A","A5709G","T5781G","-5812G","G5856A","T5986C","G6028A","G6044A","A6073G","C6097T","T6151C","T6155C","T6160C","-6169T","A6185G","T6193C","-6203G","-6205G","-6207C","-6208A","-6209A","-6210T","-6211G","-6213C","-6214A","A6215C","-6216T","A6221-","A6222-","G6253A","C6263A","A6318C","T6328A","G6345T","A6346C","A6379G","T6395A","C6396G","C6483T","G6578A","A6631G","C6636A","A6647C","A6685G","G6693A","G6743A","C6797A","A6809G","C6810A","C6812A","A6821G","C6826T","C6859A","T6860C","G6871A","T6932A","-6956T","-6958T","-6959A","-6962A","-6963A","-6969G","-6972C","-6976T","-6977G","A6996-","T7015A","A7046G","G7048A","G7072A","C7114T","A7120G","A7123G","G7152A","A7162T","C7164-","G7197A","T7217C","A7219G","G7307A","A7339G","A7348C","A7372C","A7373G","A7456G","C7463A","T7466C","A7525T","G7628A","A7691G","C7703T","G7735A","A7773G","T7774C","T7876C","A7942C","G7947A","T7950C","G7962A","A7989G","G7992A","G8019A","C8037T","T8113A","A8143G","G8159T","T8182C","C8183A","A8193C","A8194C","T8209C","C8232T","A8269G","A8288T","T8348G","A8370-","T8390C","C8406A","A8455C","A8456C","G8597T","C8607T","A8608T","G8738T","T8786A","G8822A","C8828T","C8831T","T8914G","C8927T","A8930T","A8969G","G8977A","A8978C","C8979A","A8980G","C9078A","T9095G","-9108A","A9134T","T9180G","C9181T"],"INT":["Q136K","R284G"],"RT-p51":["S123N","S162C","E169D","I202V","A207E","S211R","T294P","K357R","S359A","V371A","V376M","K390R","V435I"],"RT-p66":["S123N","S162C","E169D","I202V","A207E","S211R","T294P","K357R","S359A","V371A","V376M","K390R","V435I","G527A"],"gp120":["S1N","E34K","E64K","-109V","-111V","-115S","-117E","M133I","L137I","Q155P","N158K","R164I","N201K","V242I","D297N","Q315K","T319E","Q320K","N335K","S336P","S360T","-368Y","-369N","-371T","-375D","E381-","M398V","M406I","V414I","S433-","N435T","T436S","T437N","R448K"],"gp41":["V2I","I24V","L54M","R74S","D109N","I130V","N157S","G215D","L216P","G220E","Q229R","G230D","S239N","A245V","G286W","K297T","A310V","I329F"],"nef":["E38A","L85F","H89F","R188S","L191R"],"p17":["K69Q","Q108K"],"p2":["V7A"],"p24":["M10F","I115V","G120A","A207T","G225S"],"pro":["L63H"],"rev":["K32Q","R99G","S112Q","K115N","N116Q"],"tat":["N40K","Q78P","S81P","E85K"],"vif":["N22H","L24I","F39S","K50R","R67K","H80Q","S118T","V128I","R132C","T159S","R181K","S186N"],"vpr":["Q11P","V89G","S96P"],"vpu":["S2L","L4P","E5L","I28L","D58E","-69D","-77G","-79D"]},"labels":{"aa":"INT: Q136K, R284G; RT-p51: S123N, S162C, E169D, I202V, A207E, S211R, T294P, K357R, S359A, V371A, V376M, K390R, V435I; RT-p66: S123N, S162C, E169D, I202V, A207E, S211R, T294P, K357R, S359A, V371A, V376M, K390R, V435I, G527A; gp120: S1N, E34K, E64K, -109V, -111V, -115S, -117E, M133I, L137I, Q155P, N158K, R164I, N201K, V242I, D297N, Q315K, T319E, Q320K, N335K, S336P, S360T, -368Y, -369N, -371T, -375D, E381-, M398V, M406I, V414I, S433-, N435T, T436S, T437N, R448K; gp41: V2I, I24V, L54M, R74S, D109N, I130V, N157S, G215D, L216P, G220E, Q229R, G230D, S239N, A245V, G286W, K297T, A310V, I329F; nef: E38A, L85F, H89F, R188S, L191R; p17: K69Q, Q108K; p2: V7A; p24: M10F, I115V, G120A, A207T, G225S; pro: L63H; rev: K32Q, R99G, S112Q, K115N, N116Q; tat: N40K, Q78P, S81P, E85K; vif: N22H, L24I, F39S, K50R, R67K, H80Q, S118T, V128I, R132C, T159S, R181K, S186N; vpr: Q11P, V89G, S96P; vpu: S2L, L4P, E5L, I28L, D58E, -69D, -77G, -79D"}},"children":[{"name":"KX232594","node_attrs":{"div":0.17629999999999998,"accession":"KX232594","clade_membership":{"value":"A1"},"country":{"value":"PK"},"date":{"value":2014.0},"Strain_name":{"value":"PK001"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["G2A","C6T","T7A","T10G","G15C","C17T","A19C","G20T","C23G","-24T","A26C","C28A","C29A","G33A","A34T","C36A","G49T","G95A","A222G","A263G","A302T","A428G","C471G","T486G","A516T","A521T","C528A","A529G","A653G","-657A","-658G","A675C","C707T","G709A","G716A","G747A","A758C","G803A","A815G","A833C","A860G","T892C","C974T","A987G","T992G","G1019A","C1091T","A1093C","G1173A","T1174C","A1205G","A1265C","G1271T","A1289G","T1439C","G1451T","C1490A","C1517T","C1536A","G1543A","T1559C","C1615T","A1622G","G1687A","C1693T","C1706T","A1709G","C1714A","G1734-","A1735-","T1741A","A1742G","-1745A","-1747A","G1766A","A1781C","C1787T","G1794A","A1920G","C1957T","C1985G","A2002G","G2008A","T2080C","T2086C","A2140G","A2152C","A2223G","T2257C","G2332A","C2434T","C2499T","T2631C","C2644T","A2693G","A2713G","G2727A","A2752G","G2803A","A2829T","C2831T","T2863C","G3019A","C3031G","A3043G","A3097G","A3190G","C3201T","T3225C","G3226A","A3235T","A3279G","A3283C","A3334C","A3340G","T3343C","G3385A","A3435G","G3508C","T3517C","T3544C","A3607G","C3628T","C3649T","A3651G","G3664A","G3769A","A3808C","T3829C","G3846A","A3866G","C3908T","C3943T","G3989A","A4033G","T4039C","T4075C","C4076A","T4085C","G4109A","G4112A","C4132T","T4151G","T4153G","T4216C","A4246G","G4276A","A4391T","T4405C","A4432T","A4498C","G4522A","G4539A","T4540C","G4637A","C4652T","C4665T","A4677G","G4695A","G4696A","A4697G","G4708A","A4723C","A4751G","C4820T","C4871T","A4923C","C4925A","T4975C","A5063T","G5066A","G5123A","G5212A","C5237T","T5260C","C5333T","C5384T","C5397T","G5444A","A5446C","G5448A","G5463A","T5483C","G5545C","G5561A","G5566A","A5581C","T5602C","T5606G","T5611C","T5620C","T5621C","A5622T","C5659T","A5699G","T5704A","C5707T","A5711G","G5737A","G5739A","A5751G","T5778C","T5791G","A5793C","C5833T","A5865G","C5869A","G5902A","G5917T","T5964C","C5974A","C5989T","G6029A","A6030C","A6086T","A6092G","C6101A","A6159G","-6165A","-6167A","T6184G","C6190T","A6191C","A6192C","-6199T","-6201G","-6204T","-6206C","A6223-","G6224-","A6226-","G6227-","T6246A","C6278A","A6279G","A6326G","A6328G","G6336A","A6376G","G6392A","G6425A","C6446T","G6466T","G6481T","C6487T","T6562C","A6573G","G6575A","A6583G","C6641A","A6646G","C6647T","A6648C","A6689G","A6693C","A6781T","A6790C","A6798G","C6824T","A6841T","C6937A","-6957A","-6961A","-6968G","-6970A","-6973G","-6974A","-6975C","-6979G","-6980G","-6981G","-6982A","-6983A","-6994G","-6996G","-6998T","-6999C","A7037G","A7089C","A7093G","G7147A","A7155C","C7156A","A7158G","A7163-","T7165-","A7241C","G7269A","G7270A","A7313T","A7315T","G7322T","C7348T","T7622A","G7633T","C7651T","C7678A","A7689G","A7690T","T7692A","A7701G","C7747G","A7817C","T7888A","G7918A","T7921C","C7932T","A7938G","G8005C","A8014G","T8028C","G8032T","T8035C","G8036A","C8047T","C8092A","C8095A","C8103T","C8104T","G8152A","T8164C","T8176C","A8204G","A8207G","T8214A","G8216A","T8223C","C8242T","A8252T","G8261A","A8263C","T8265G","G8280T","A8314G","C8323A","C8342A","G8348A","-8370G","G8377A","A8396T","A8406G","G8407C","G8409A","T8414C","A8425C","G8430A","C8471T","T8495C","G8503A","T8537A","A8564G","G8590C","T8594C","C8603A","A8604G","T8645G","G8653A","A8666C","T8675C","G8678A","A8701T","T8711C","G8732A","C8747T","C8751T","A8762T","G8804A","A8829T","A8834G","C8840T","A8846G","G8875A","A8882C","A8886C","C8900T","A8915G","A8924T","A8929G","G8933A","T8939C","G8942A","T9074C","C9075T","G9180A"],"INT":["E11D","S24N","I31V","V72I","L101I","V112I","V113I","F126V","T206S","K219N","S255N","D288N"],"RT-p51":["K43R","T135I","I179T","T200A","R211K","K245M","D312E","A369V","M377T","K395R","E396D","E413D"],"RT-p66":["K43R","T135I","I179T","T200A","R211K","K245M","D312E","A369V","M377T","K395R","E396D","E413D","N447S","E471D","N519S"],"gp120":["E4G","N5K","E21D","V37A","E59T","T78S","I80V","L83I","N102S","T104N","-112T","-114N","-116T","E125-","F131Y","Q142R","K158E","S161N","V180I","A191T","K204D","E241K","I243M","P263T","I279V","H280P","E309D","K312N","K315R","-326N","K329-","-370G","-374T","D375E","-376G","-377T","-379S","-381G","-382S","I395V","Q412P","I463L","R472K"],"gp41":["I4F","V7F","S107T","E110D","D125E","D129G","V130E","K133R","D148E","N195K","T210I","N212S","L242S","V245I","F263L","A267V","I301V","N302D","F304Y","D305N","I307T","R317W","E320N","V321G","G326V"],"nef":["I10V","G12E","E18D","R22A","A23T","V30I","S52N","A56V","D63E","G83A","S88G","I101M","R104K","E108D","Y120F","S163C","I168M","R178K","R182Q","L194I"],"p17":["L46V","L51V","E62D","Q65R","K108R","K114Q","S125N"],"p24":["A6T","Q9H","M54T","I86V","H87Q","M96I","N121T","V148T","T171A","E180D"],"p6":["S3N","P5L","A12E","E19-","I21K","A22T","S23D","-26P","N31G","-32R","R33D","E34Q","Q35N","-36P","V39I"],"p7":["L24I","R26K","T50I"],"pro"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p7: G4S, R11K, I12M, -13I; pro: G16E, K45R; rev: E11Q, S54T, T62A, P100V, Q101E, V102T, S103G, I109V, S112P, N116K; tat: G57A, K63E; vif: H22N, L24V, K34R, N37R, F39A, R93K, Q102L, E134D, T137A, T157K, Q178R; vpr: I61T, T63I, R85Q; vpu: L4P, R47K, A50E, D58E, E60D, L61T, S62D, -79Y"}}}]},{"name":"A1_NODE_0000038","node_attrs":{"div":0.11063999999999997,"clade_membership":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["A480G","A697C","G1498A","A1783T","T1787A","G2710A","C3542T","C3682T","A4294G","A4878G","G5534A","T6193C","A6200-","A6221G","A6276G","G6336-","G6635A","A6647G","G6689A","C7124A","A7161G","A7641G","G8050A","C8595G"],"gp120":["K141R","N159S","V279I","L424I"],"gp41":["L265S"],"nef":["G83A","L85V","Y120F","D151E"],"p1":["K4R"],"p17":["S49G","D121A"],"p7":["R11K"],"rev":["D7S","A68T"],"tat":["R53K"],"vif":["I98V"]},"labels":{"aa":"gp120: K141R, N159S, V279I, L424I; gp41: L265S; nef: G83A, L85V, Y120F, D151E; p1: K4R; p17: S49G, D121A; p7: R11K; rev: D7S, A68T; tat: R53K; 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V32I, V72T, L74I, S119P, A124S, I203M, K219N, N222K; RT-p51: K20R, H121Y, S123D, S162C, I179T, T200I, S211N, S251N, A272P, T294A, F346Y, V365I, M377R, V381I, K390R, I393V, K395R; RT-p66: K20R, H121Y, S123D, S162C, I179T, T200I, S211N, S251N, A272P, T294A, F346Y, V365I, R366K, M377R, V381I, K390R, I393V, K395R, S554T, I556V; gp120: A3V, T35E, K37Q, E64N, T104K, N105E, I106V, -109V, -110T, -111A, -112A, -113N, -114S, -115T, -116E, -117E, -118M, -119M, E125-, M133I, L137I, Q142K, N157S, S160T, S161T, I173V, E183H, N201Q, E239G, A253V, N255T, P263S, N267D, T269I, K277T, R280P, T292I, D297K, Q316R, A318V, E319T, H324N, K326R, -328T, K329T, N334D, S335K, S336P, N358D, -368G, N369A, -372D, -373S, -374M, -375H, -376G, -377A, -379D, -381E, -382S, M398R, E418K, N420D, S433-, -436D, T437S, E481G; gp41: L54M, K77R, D129Q, L152F, N160T, V178I, S192A, I193L, T210P, N212S, D215E, A268T, T270I, L290V, I298T, G313N, G324R; nef: G3S, M20I, P24Q, A25P, V48T, -53V, -54T, C55-, V56-, E63D, E65D, A84S, 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A25S, H50-, P51-, S52N, -53P, -54S, V56A, G83A, L85V, I101A, E108D, Y120F, E176D, K182V, K184R, R194L; p17: T72S, T81A, Y86C, R91K, K95R, N109K, S111N, Q116K, D121E, S125N, K127N; p2: V7A; p24: S14N, G120S, T210S; p6: -36T, S51L; pro: V13I, K20R, K45R; rev: E11K, K14T, Q24K, C63Y, A68S, V108E, T114A; tat: R57E, Q60H, P73S, V80I; vif: V7A, H27Y, V31I, K50R, P58L, R63K, R67K, R92N, R93S, I98V, D101E, Q127R, Q178R, R181K; vpr: H28N, N48H, S93P; vpu: L4P, C7L, L33I, E66D, G68-, -79L, -80G"}}}]},{"name":"A1_NODE_0000044","node_attrs":{"div":0.11357999999999997,"clade_membership":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["T1787-","A2693G","G3442A","T3644A","C4585T","A4826C","G6046T","-6167A","-6170G","-6171T","-6172C","-6173A","G6725A","-6962A","-6963A","-6964C","A7275G","A7998G","A8531C","G8875A"],"RT-p51":["T200A"],"RT-p66":["T200A","L517I"],"gp120":["E64D","K265T","A291T","K326-","K474R"],"gp41":["D232G"],"nef":["R178K","L198M"],"p2":["Q8T"],"p6":["V39I"],"vif":["Q80H"]},"labels":{"aa":"RT-p51: T200A; RT-p66: T200A, L517I; gp120: E64D, K265T, A291T, K326-, K474R; gp41: D232G; nef: R178K, L198M; p2: Q8T; p6: V39I; vif: 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V72I, G134D, S153T, E167D, T218S, D278S, G283D; RT-p51: K11Q, S173L, K174Q, E177D, I179V, E248D, E250G, A272P, D312E, K366R, V376T, M403T, V435A; RT-p66: K11Q, S173L, K174Q, E177D, I179V, E248D, E250G, A272P, D312E, V376T, M403T, V435A, R512K, S515A, N519S, G527D, K558R; gp120: E4D, E34D, T35K, K37V, H57N, E59T, D64N, K93Q, T104S, N105S, -107T, -109T, -110S, -111N, -113V, -114N, -115S, -116T, -117G, -118G, -119R, -120K, -121V, -122D, -123Q, I126M, E158G, R201N, E203K, K212N, G240Q, K241E, T265N, N267T, T269L, A288T, Y290F, H302Y, N304V, S308T, K309Q, R315Y, Q316N, A318S, E319V, -328N, I332R, N335S, G351R, G361R, -368F, N378-, -383S, T385N, V402A, Q412K, V414M, V418E, I425M, N434S, N435T, T437-, V468I, R472T; gp41: H53Q, K56R, V72L, R77K, K90R, K106R, N109S, Q119E, K122R, N133R, E137D, L150M, A151S, N157D, D163Q, K172R, I175V, H209L, T210A, E223G, G232D, A267V, A268G, R269H, T270S, V271S, E272L, L273R, L274G, G275L, V318I, G322A, G324A, H331N; nef: I10K, V11P, G29A, K39R, S46T, L85F, 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-81L"}}},{"name":"KF716475","node_attrs":{"div":0.16785999999999995,"accession":"KF716475","clade_membership":{"value":"A1"},"country":{"value":"KE"},"date":{"value":2011.0},"Strain_name":{"value":"DEMA11KE001"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["A263G","G317A","G413A","A416G","A417G","A418C","T435C","A461G","T467C","G542C","T560C","A563G","C606A","A653G","C672A","G687A","G706A","A708C","G716T","C767T","T771A","C772A","G837A","A866T","C879T","A881T","C902T","C917T","A959G","G977A","T992A","C1094T","C1136T","A1205G","T1220C","G1256A","A1343C","T1344C","G1418A","T1481C","G1486A","G1493A","G1508A","T1511C","C1514T","C1541T","T1559G","A1588G","G1642A","T1646C","T1682A","A1736C","C1750T","G1760A","A1772G","-1785G","-1786G","-1787T","T1790A","C1825A","T1909G","A1932G","A1951G","T1954C","G1963A","G1972A","T1978G","C1985G","T2035C","T2087C","A2212T","T2338C","G2380A","G2389A","C2392T","C2393T","C2434T","C2456G","A2508C","A2557G","T2632C","G2710A","G2727A","A2752G","C2797T","A2842G","A2845C","A2962G","T2968G","G3016A","G3044A","T3045C","C3067A","A3116G","A3151G","G3168A","G3200A","C3252T","A3292T","C3307T","G3370A","C3376T","T3399A","A3442G","G3448A","C3469A","A3543T","T3544C","G3617T","A3637G","G3643A","A3703G","A3736G","C3751T","T3755A","T3778C","C3808A","A3817G","A3866G","G3877A","G3997A","G4228A","T4234C","G4243A","A4264C","G4276A","C4579T","G4581A","C4652T","C4665T","T4702G","A4722T","C4728A","T4738C","C4820A","G4855A","C4937A","G4949A","C4976T","A4994T","T5028C","A5048T","A5054T","C5062T","G5066A","T5073C","G5094A","A5122G","C5149T","G5185A","C5186A","T5209A","C5213A","C5214T","A5215G","A5233G","C5248T","A5285G","A5287C","C5294T","A5302G","C5306T","T5327C","G5444A","C5445T","A5462G","G5463A","A5480C","T5483C","G5493A","A5556C","A5585C","T5611A","T5612A","C5620A","A5621C","A5655G","G5687C","A5699G","C5707T","G5747A","C5756A","A5790T","T5791G","C5792A","A5793T","A5794G","C5795A","C5797T","T5799G","A5800G","T5801C","T5802G","A5804C","G5808T","G5809T","G5811T","-5815G","-5816A","-5817G","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","-5824A","C5826T","A5831G","A5843-","T5844-","G5864C","T5885C","G5917C","C5922T","G5956A","T5992C","A6015G","A6016T","C6023T","C6052T","A6066G","T6142A","T6171C","-6174A","A6177G","-6180T","A6188G","C6189T","G6195T","T6196C","G6198A","C6199T","-6201A","-6204A","-6205G","-6207T","-6208C","-6210A","-6211C","-6212T","-6213T","-6215C","-6216G","-6220G","A6221G","G6223A","A6225G","C6241T","G6262A","C6278A","C6305T","T6306C","A6311G","C6317T","T6322G","A6328T","T6331G","A6333G","A6338G","G6339A","T6340G","A6349G","G6368A","G6379A","G6401C","G6442A","A6456G","T6460C","A6470G","G6481A","C6482T","G6575C","A6605G","C6618T","A6639G","G6640T","T6643C","A6647C","A6664G","A6682C","A6686-","G6687-","T6688-","G6689-","T6690-","A6691-","C6692G","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","A6706G","A6725G","T6730A","A6732C","C6752A","A6771G","T6772C","G6774A","G6779A","A6790C","A6798G","-6830A","-6831A","-6832A","C6835T","-6836G","-6838T","A6840C","A6848G","A6850G","T6856G","A6910G","T6922C","-6958T","-6959A","-6965A","-6966C","-6967T","-6968T","-6969G","-6970G","-6971T","-6972C","-6974C","-6975T","-6976T","-6977A","-6979C","G6980A","A6981G","A6989G","G6990A","-6994A","-6995G","A6996G","-6998A","-6999T","C7006T","T7009C","A7100C","A7127C","T7144G","A7161G","A7162C","C7164A","G7275A","G7307A","A7312T","A7313C","G7343A","C7344T","A7345G","A7375G","C7397A","A7399C","T7516C","G7517A","A7573G","C7574G","C7625T","G7627C","A7643G","C7645A","T7656A","T7666G","G7701A","A7706C","C7747T","G7759C","G7777A","G7790A","T7876C","A7880G","G7890A","T7912C","G7918A","T7930C","A7931C","C7932T","T7948A","G8050A","T8094C","T8171C","T8205C","C8221T","A8222G","G8267A","G8273A","T8290C","G8323T","T8348C","T8414C","C8415T","A8469G","T8483C","G8484A","C8498T","T8509C","G8522A","T8567C","A8570C","T8582A","G8590C","C8595A","G8597A","A8667C","G8717T","T8720C","A8739G","C8740T","T8746A","A8753G","A8754T","C8755G","A8756C","T8789C","T8795A","C8812A","G8843T","A8852G","G8880A","T8881C","A8886G","A8887T","A8893G","G8894A","C8913T","G8923C","A8924G","C8934A","A8952G","A8954G","-9109T"],"INT":["D11E","I31V","R269K"],"RT-p51":["H121D","E138A","S211N","E250D","D291E","V317T","D324E","I341V","R358K","A369T","T386I","E399D","V435E"],"RT-p66":["H121D","E138A","S211N","E250D","D291E","V317T","D324E","I341V","R358K","R366K","A369T","T386I","E399D","V435E","Y483L","A508S","S554T"],"gp120":["E4Q","Y11H","E21D","T23I","Q54R","H57Y","N71S","T104-","N105-","V106-","N108-","T112-","-122E","-123G","E124G","Q142K","L151S","I153V","P155S","I156M","E158S","D159N","N160E","A172T","E183Q","N206D","P210S","V242Q","I243V","N251D","T255I","V261A","K262S","T265Q","R276S","S278G","V279I","R280H","T291A","N292R","D293N","I294A","Q300K","N306S","R307K","E312D","-326K","-328D","K329T","I332V","N334K","-368S","-372Q","-373S","-379D","-380T","-381G","-382I","-383N","R416Q","I425L","N433V","E436G","T437N","R474K"],"gp4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D11E, I31V, R269K; RT-p51: H121D, E138A, S211N, E250D, D291E, V317T, D324E, I341V, R358K, A369T, T386I, E399D, V435E; RT-p66: H121D, E138A, S211N, E250D, D291E, V317T, D324E, I341V, R358K, R366K, A369T, T386I, E399D, V435E, Y483L, A508S, S554T; gp120: E4Q, Y11H, E21D, T23I, Q54R, H57Y, N71S, T104-, N105-, V106-, N108-, T112-, -122E, -123G, E124G, Q142K, L151S, I153V, P155S, I156M, E158S, D159N, N160E, A172T, E183Q, N206D, P210S, V242Q, I243V, N251D, T255I, V261A, K262S, T265Q, R276S, S278G, V279I, R280H, T291A, N292R, D293N, I294A, Q300K, N306S, R307K, E312D, -326K, -328D, K329T, I332V, N334K, -368S, -372Q, -373S, -379D, -380T, -381G, -382I, -383N, R416Q, I425L, N433V, E436G, T437N, R474K; gp41: V2I, I4G, A14M, I24M, Q32N, V72M, L91V, L108Y, N114E, L118Q, D121E, I135L, L152F, D163K, I193V, R196K, T210L, I264T, I301T, I307V, G322R, G324R, L340F; nef: I16V, P25S, I43V, V48I, V56A, G83A, L85I, I109L, Q125H, T133V, F135Y, T138C, D151E, T157N, E176D, V180T, K182V, K184R, L191F, R194T, K204E; p17: K28A, K69N, Q113K, A118T, S125R, K127N; p24: S14N, V36I, E45D, Q50Y, G120S; p6: E19D, S23F, -36G, L38P, I39S, P49Q; p7: R7K, K41R; pro: K14R, D37E, K45R, D60E, L63V; rev: K14T, Y28P, S34T, A68T, V108A; tat: S23N, K29R, Q35P, V36A, Q60H, Q70P, L74T, P75S, V80D; vif: H27Y, F39C, S46C, H48N, V51A, D78E, R90K, D117E, Q136H, T159I, A170T, K179R, T188I; vpr: H28N, P37M, I61V; vpu: L2N, L4W, L5N, G27A, K31R, R47K, A50E, S62A, T63A, I65C, -69N, -70Y, -71G, -72L, -73G, -74D, -75N, -76N, 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S39C, M50I, A124G, Q216H; RT-p51: E40D, K49R, D312E, K366R; RT-p66: E40D, K49R, D312E, R512K; gp120: H57P, -110T, I126L, P155Q, N157D, E158K, K212N, H302Y, T366S, -373S, N378-, D384-, T471N, R472T; gp41: E110D, H209L, G230D, I264T, L290V, R294Q, I298T, I329F, H331N; p17: N124S; p24: T207A, G225S, V230I; p6: I14L, C15F; p7: Q9G, K10Q, R11K, I12R, -13I; pro: K14R, K20R; rev: S67P, L73F, S106P, V108G; tat: R57G; vif: H22N, T74P, T137A; vpr: 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S17T, L101I, V113I; RT-p51: K64R, P243S, M245K, E248D, Q334H, M377L, S379A, K388R; RT-p66: K64R, P243S, M245K, E248D, Q334H, M377L, S379A, K388R, I517L, N519S, Q520L, S554A, K558R; gp120: A3G, E4G, N5S, K18R, E34D, V40I, N52D, E59K, K93Q, V106A, -107G, -109D, -111N, -113N, -114T, -115T, -116I, E124G, M133V, L137I, Y145H, S146A, R150K, I153V, D159A, A172V, V180I, S181K, E203T, S228T, K241E, T250S, V261A, K262E, P263S, N272G, R276K, K277R, R280H, F289L, D293N, D297N, Q300E, N304K, R307G, K309Q, E312N, E319D, Q320K, K323E, -328D, N334K, N335H, N349T, S360T, G361K, -368S, -372D, -374T, -375D, -376G, R391K, Q404R, P409N, V414K, R416E, V418A, N433V, N434S, N435R, T437N, N471H; gp41: I4M, I24L, V69I, E109Q, L118Q, D129E, N133R, N157S, S165T, A189T, R196K, N212S, S251N, T264A, A267V, G293S, T298N, N302S, V304I, A310V, I321V, I325L, I336V; nef: P28T, V48T, N49-, H50-, P51-, S52-, C55-, V56-, E59A, I101T, E108D, V146E, D151A, T157N, E176D, K182R, L191F, K192R, M198E; p1: S9N; p17: A15R, K18V, T84V, D93E, T115R, A118T, K127N, V128A; p24: I2V, T48A, I58V, P111I, D128E, K131R; p6: R4G, E19G, R33Q, -36A, L38P, I39S, K42R; p7: R7K, R12K, K34R; pro: V13I, D37E, K57R, K70R, M89L; rev: E11D, Q24K, S54T, I55L, E57K, T62A, P72S, L78I, H82R, V102I, G111E, K115E, N116K; tat: Q35P, T58P, T77A; vif: V7A, V31I, N37G, F39Y, E45Q, R92K, I98V, Q102S, E134D, R167K, Q178R; vpr: R85Q, S93P; vpu: L5D, L16A, L18I, V21I, K31T, K32R, K38R, L42I, E48Q, M67L, -69D, -70Y, -71D, -72L, -73G, -79V, -80N, D81N"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]},"root_sequence":{"INT":"FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED","RT-p51":"PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETF","RT-p66":"PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL","gp120":"SATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKR","gp41":"AVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERILL","nef":"MGGKWSKSSVIGWPTVRERMRRAEPAADRVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPD*QNYTPGPGVRYPLTFGWCYKLVPVEPDKIEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*","nuc":"GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCACCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCAGCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGAAGAATGATACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTATAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAACACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCCTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTC","p1":"FLGKIWPSYKGRPGNF","p17":"MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAADTGHSNQVSQNY","p2":"AEAMSQVTNSATIM","p24":"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVL","p6":"LQSRPEPTAPPEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ","p7":"MQRGNFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQAN","pro":"PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF","rev":"MAGRSGDSDEELIRTVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILGTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE*","tat":"MEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPTSQPRGDPTGPKE*","vif":"MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*","vpr":"MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTRQRRARNGASRS*","vpu":"MQPIPIVAIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL*"}} \ No newline at end of file diff --git a/data_output/index.json b/data_output/index.json index 5f055a51..57fdbdac 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -2262,6 +2262,44 @@ "web": "3.0.0-alpha.0" } } + }, + { + "path": "community/neherlab/hiv-1", + "enabled": true, + "files": { + "pathogenJson": "pathogen.json", + "changelog": "CHANGELOG.md", + "examples": "sequences.fasta", + "genomeAnnotation": "genome_annotation.gff3", + "readme": "README.md", + "reference": "reference.fasta", + "treeJson": "tree.json" + }, + "capabilities": { + "qc": [ + "frameShifts", + "missingData", + "mixedSites", + "privateMutations", + "stopCodons" + ] + }, + "versions": [ + { + "tag": "unreleased", + "compatibility": { + "cli": "3.0.0-alpha.0", + "web": "3.0.0-alpha.0" + } + } + ], + "version": { + "tag": "unreleased", + "compatibility": { + "cli": "3.0.0-alpha.0", + "web": "3.0.0-alpha.0" + } + } } ] } diff --git a/data_output/minimizer_index.json 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