From d507f41d94750e6d3d53fde72bc090e25176a9b6 Mon Sep 17 00:00:00 2001 From: ivan-aksamentov Date: Mon, 6 May 2024 16:21:50 +0200 Subject: [PATCH 01/12] fix: path in readme --- data/community/neherlab/hiv-1/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data/community/neherlab/hiv-1/README.md b/data/community/neherlab/hiv-1/README.md index 8d86ad0e..e4e4e365 100644 --- a/data/community/neherlab/hiv-1/README.md +++ b/data/community/neherlab/hiv-1/README.md @@ -5,7 +5,7 @@ | authors | [Richard Neher (U Basel)](https://neherlab.org), [Thomas Leitner (LANL)](https://public.lanl.gov/tkl/) | | data source | LANL database and Genbank | | workflow | [github.com/neherlab/HIV-nextclade](https://github.com/neherlab/HIV-nextclade) | -| nextclade dataset path | neherlab/HIV-1 | +| nextclade dataset path | neherlab/hiv-1 | | reference | [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) | This Nextclade data set aligns sequences to the HXB2 reference and finds the closest match in a reference tree build from the [2021 Super filtered Alignment](https://www.hiv.lanl.gov/content/sequence/NEWALIGN/help.html#filter) provided by LANL. From 6fc7d4f548a268fb01d1709c6a8393e849a0bbfb Mon Sep 17 00:00:00 2001 From: ivan-aksamentov Date: Mon, 6 May 2024 16:22:03 +0200 Subject: [PATCH 02/12] fix: add attributes --- data/community/neherlab/hiv-1/pathogen.json | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/data/community/neherlab/hiv-1/pathogen.json b/data/community/neherlab/hiv-1/pathogen.json index d95e5180..7bc78d16 100644 --- a/data/community/neherlab/hiv-1/pathogen.json +++ b/data/community/neherlab/hiv-1/pathogen.json @@ -66,5 +66,10 @@ "scoreWeight": 40 } }, - "schemaVersion": "3.0.0" + "schemaVersion": "3.0.0", + "attributes": { + "name": "HIV-1 (HXB2)", + "reference accession": "NC_001802", + "reference name": "HIV-1, strain HXB2" + } } From 19463ea0b5fb47b17fb594a6f04edf035d9eaefe Mon Sep 17 00:00:00 2001 From: ivan-aksamentov Date: Mon, 6 May 2024 16:25:49 +0200 Subject: [PATCH 03/12] feat: toggle "experimental" flag on --- data/community/neherlab/hiv-1/pathogen.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data/community/neherlab/hiv-1/pathogen.json b/data/community/neherlab/hiv-1/pathogen.json index 7bc78d16..ca3e2839 100644 --- a/data/community/neherlab/hiv-1/pathogen.json +++ b/data/community/neherlab/hiv-1/pathogen.json @@ -25,7 +25,7 @@ ], "deprecated": false, "enabled": true, - "experimental": false, + "experimental": true, "files": { "pathogenJson": "pathogen.json", "changelog": "CHANGELOG.md", From 29fdce6a614c7378d4eaa8c99877bea1f18fa56d Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Mon, 6 May 2024 14:33:58 +0000 Subject: [PATCH 04/12] chore: rebuild [skip ci] --- .../neherlab/hiv-1/unreleased/README.md | 2 +- .../neherlab/hiv-1/unreleased/dataset.zip | Bin 8263722 -> 8263855 bytes .../neherlab/hiv-1/unreleased/pathogen.json | 7 ++++++- data_output/index.json | 5 +++++ 4 files changed, 12 insertions(+), 2 deletions(-) diff --git a/data_output/community/neherlab/hiv-1/unreleased/README.md b/data_output/community/neherlab/hiv-1/unreleased/README.md index 8d86ad0e..e4e4e365 100644 --- a/data_output/community/neherlab/hiv-1/unreleased/README.md +++ b/data_output/community/neherlab/hiv-1/unreleased/README.md @@ -5,7 +5,7 @@ | authors | [Richard Neher (U Basel)](https://neherlab.org), [Thomas Leitner (LANL)](https://public.lanl.gov/tkl/) | | data source | LANL database and Genbank | | workflow | [github.com/neherlab/HIV-nextclade](https://github.com/neherlab/HIV-nextclade) | -| nextclade dataset path | neherlab/HIV-1 | +| nextclade dataset path | neherlab/hiv-1 | | reference | [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) | This Nextclade data set aligns sequences to the HXB2 reference and finds the closest match in a reference tree build from the [2021 Super filtered Alignment](https://www.hiv.lanl.gov/content/sequence/NEWALIGN/help.html#filter) provided by LANL. diff --git a/data_output/community/neherlab/hiv-1/unreleased/dataset.zip b/data_output/community/neherlab/hiv-1/unreleased/dataset.zip index 88a28ac25514578c4575d7ca3d2ad2bd61a3f76c..632d7f7bfbb9268bc146589da5995a366777e6c9 100644 GIT binary patch delta 748 zcmZY7%T5z<6vy$IPPtXbyDe7KzauJ@R%hxB0WVN5MJwJBuQ=4H9hE_5rl3N{g$rGn zXml~};6_LjUAs2nB}`<)1Js@0>cSXL@>!gmlasUfeVnf=pBC!MyVudVrNz$+Zwg9N z*`CfAA7r^y%S9JE+um2F%F8X1v|LN3R7LUKO07G+q`WYF-?hgpzU67XVm2ly%`qn| zIxRmmk}*VAesnOK($arsu2r&J%PCsIEEX-#vnQR#>TqsM*Nq-M`~TiQ*V4lCUDI|% zaSE?Mg$6?XhJhu(26$1umUTgVii_n4c1~E)?))UB8~*wu?b0RMhCWF zE4D#kJ2dP-Cw5{NcB2a^>_Iou$Y3w_q4B?gEcW974&o3FqX$ROi$3(@D30McPGA6o z$l)YT;WW-5k0G4JITUan!?=KpxP;5Nf~&ZO5nRV8Zr~QCHVCHW+!+}Ilh$M~h aZ6fHCe}>-@LBISxY;6xZn(OgElB8b=lF#`7 delta 618 zcmYMyw=+Wl0D$rLyhKFriQaolbfSl7(W3XBC{cr`Z!s`%=gzq|8r?Av8H_fgKZC(P zVDzyVe)~6kkDhPo{^?t~I#=0VpKm=ER!QB~K2%`57Dc<)ta?w^-hIWLIy8dd@W$o@ zNhLNZd2iZrAn1DVJ|Hgb@QJmjMQg($*rzY)bKK`F{mjtW$w3e_;72DPX|JsQx6 zCYaHT7Ff`VHngJyov@+{-RMCt`d~vp1~7;r3}XbN7{fRwFo`KlV+OOB!#ozS2s<2D z!ZKE{3MbaEjty*L3)^sE2fNsV8~ZrGA&zkTq8LsdKK@QoEIQf!|Az9WldV2C1|?E2 Yo5UTZS1;FyQ_7`Yj`wv%%Yq>M0NIY~&j0`b diff --git a/data_output/community/neherlab/hiv-1/unreleased/pathogen.json b/data_output/community/neherlab/hiv-1/unreleased/pathogen.json index e20f8794..441565da 100644 --- a/data_output/community/neherlab/hiv-1/unreleased/pathogen.json +++ b/data_output/community/neherlab/hiv-1/unreleased/pathogen.json @@ -40,7 +40,7 @@ ], "deprecated": false, "enabled": true, - "experimental": false, + "experimental": true, "files": { "pathogenJson": "pathogen.json", "changelog": "CHANGELOG.md", @@ -85,6 +85,11 @@ } }, "schemaVersion": "3.0.0", + "attributes": { + "name": "HIV-1 (HXB2)", + "reference accession": "NC_001802", + "reference name": "HIV-1, strain HXB2" + }, "version": { "tag": "unreleased", "compatibility": { diff --git a/data_output/index.json b/data_output/index.json index 13ba73da..0bd3987b 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -2434,6 +2434,11 @@ { "path": "community/neherlab/hiv-1", "enabled": true, + "attributes": { + "name": "HIV-1 (HXB2)", + "reference accession": "NC_001802", + "reference name": "HIV-1, strain HXB2" + }, "files": { "pathogenJson": "pathogen.json", "changelog": "CHANGELOG.md", From 9a28be5fbca601aad6ce82ce0f99be124a0b4d13 Mon Sep 17 00:00:00 2001 From: ivan-aksamentov Date: Mon, 6 May 2024 16:47:03 +0200 Subject: [PATCH 05/12] feat: move `neherlab/hiv-1` to `neherlab/hiv-1/hxb2` --- data/community/neherlab/hiv-1/{ => hxb2}/CHANGELOG.md | 0 data/community/neherlab/hiv-1/{ => hxb2}/README.md | 0 data/community/neherlab/hiv-1/{ => hxb2}/genome_annotation.gff3 | 0 data/community/neherlab/hiv-1/{ => hxb2}/pathogen.json | 0 data/community/neherlab/hiv-1/{ => hxb2}/reference.fasta | 0 data/community/neherlab/hiv-1/{ => hxb2}/sequences.fasta | 0 data/community/neherlab/hiv-1/{ => hxb2}/tree.json | 0 7 files changed, 0 insertions(+), 0 deletions(-) rename data/community/neherlab/hiv-1/{ => hxb2}/CHANGELOG.md (100%) rename data/community/neherlab/hiv-1/{ => hxb2}/README.md (100%) rename data/community/neherlab/hiv-1/{ => hxb2}/genome_annotation.gff3 (100%) rename data/community/neherlab/hiv-1/{ => hxb2}/pathogen.json (100%) rename data/community/neherlab/hiv-1/{ => hxb2}/reference.fasta (100%) rename data/community/neherlab/hiv-1/{ => hxb2}/sequences.fasta (100%) rename data/community/neherlab/hiv-1/{ => hxb2}/tree.json (100%) diff --git a/data/community/neherlab/hiv-1/CHANGELOG.md b/data/community/neherlab/hiv-1/hxb2/CHANGELOG.md similarity index 100% rename from data/community/neherlab/hiv-1/CHANGELOG.md rename to data/community/neherlab/hiv-1/hxb2/CHANGELOG.md diff --git a/data/community/neherlab/hiv-1/README.md b/data/community/neherlab/hiv-1/hxb2/README.md similarity index 100% rename from data/community/neherlab/hiv-1/README.md rename to data/community/neherlab/hiv-1/hxb2/README.md diff --git a/data/community/neherlab/hiv-1/genome_annotation.gff3 b/data/community/neherlab/hiv-1/hxb2/genome_annotation.gff3 similarity index 100% rename from data/community/neherlab/hiv-1/genome_annotation.gff3 rename to data/community/neherlab/hiv-1/hxb2/genome_annotation.gff3 diff --git a/data/community/neherlab/hiv-1/pathogen.json b/data/community/neherlab/hiv-1/hxb2/pathogen.json similarity index 100% rename from data/community/neherlab/hiv-1/pathogen.json rename to data/community/neherlab/hiv-1/hxb2/pathogen.json diff --git a/data/community/neherlab/hiv-1/reference.fasta b/data/community/neherlab/hiv-1/hxb2/reference.fasta similarity index 100% rename from data/community/neherlab/hiv-1/reference.fasta rename to data/community/neherlab/hiv-1/hxb2/reference.fasta diff --git a/data/community/neherlab/hiv-1/sequences.fasta b/data/community/neherlab/hiv-1/hxb2/sequences.fasta similarity index 100% rename from data/community/neherlab/hiv-1/sequences.fasta rename to data/community/neherlab/hiv-1/hxb2/sequences.fasta diff --git a/data/community/neherlab/hiv-1/tree.json b/data/community/neherlab/hiv-1/hxb2/tree.json similarity index 100% rename from data/community/neherlab/hiv-1/tree.json rename to data/community/neherlab/hiv-1/hxb2/tree.json From e9cb401233c1c6e40f8dd8b4672faf660fb33327 Mon Sep 17 00:00:00 2001 From: ivan-aksamentov Date: Mon, 6 May 2024 16:48:51 +0200 Subject: [PATCH 06/12] feat: fix path in readme after moving --- data/community/neherlab/hiv-1/hxb2/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/data/community/neherlab/hiv-1/hxb2/README.md b/data/community/neherlab/hiv-1/hxb2/README.md index e4e4e365..d7323573 100644 --- a/data/community/neherlab/hiv-1/hxb2/README.md +++ b/data/community/neherlab/hiv-1/hxb2/README.md @@ -5,7 +5,7 @@ | authors | [Richard Neher (U Basel)](https://neherlab.org), [Thomas Leitner (LANL)](https://public.lanl.gov/tkl/) | | data source | LANL database and Genbank | | workflow | [github.com/neherlab/HIV-nextclade](https://github.com/neherlab/HIV-nextclade) | -| nextclade dataset path | neherlab/hiv-1 | +| nextclade dataset path | community/neherlab/hiv-1/hxb2 | | reference | [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) | This Nextclade data set aligns sequences to the HXB2 reference and finds the closest match in a reference tree build from the [2021 Super filtered Alignment](https://www.hiv.lanl.gov/content/sequence/NEWALIGN/help.html#filter) provided by LANL. From ad37bd3ae84b6f40c0fe91d109489d277c125007 Mon Sep 17 00:00:00 2001 From: nextstrain-bot Date: Mon, 6 May 2024 14:49:43 +0000 Subject: [PATCH 07/12] chore: rebuild [skip ci] --- data/community/collection.json | 3 +- .../hiv-1/hxb2/unreleased/CHANGELOG.md | 3 + .../neherlab/hiv-1/hxb2/unreleased/README.md | 35 + .../hiv-1/hxb2/unreleased/dataset.zip | Bin 0 -> 8263870 bytes .../hxb2/unreleased/genome_annotation.gff3 | 27 + .../hiv-1/hxb2/unreleased/pathogen.json | 100 + .../hiv-1/hxb2/unreleased/reference.fasta | 155 + .../hiv-1/hxb2/unreleased/sequences.fasta | 4803 +++++++++++++++++ .../neherlab/hiv-1/hxb2/unreleased/tree.json | 1 + data_output/index.json | 2 +- data_output/minimizer_index.json | 2 +- 11 files changed, 5128 insertions(+), 3 deletions(-) create mode 100644 data_output/community/neherlab/hiv-1/hxb2/unreleased/CHANGELOG.md create mode 100644 data_output/community/neherlab/hiv-1/hxb2/unreleased/README.md create mode 100644 data_output/community/neherlab/hiv-1/hxb2/unreleased/dataset.zip create mode 100644 data_output/community/neherlab/hiv-1/hxb2/unreleased/genome_annotation.gff3 create mode 100644 data_output/community/neherlab/hiv-1/hxb2/unreleased/pathogen.json create mode 100644 data_output/community/neherlab/hiv-1/hxb2/unreleased/reference.fasta create mode 100644 data_output/community/neherlab/hiv-1/hxb2/unreleased/sequences.fasta create mode 100644 data_output/community/neherlab/hiv-1/hxb2/unreleased/tree.json diff --git a/data/community/collection.json b/data/community/collection.json index 696958a3..fb18fd79 100644 --- a/data/community/collection.json +++ b/data/community/collection.json @@ -16,6 +16,7 @@ }, "dataset_order": [ "community/isuvdl/mazeller/prrsv2/orf5/yimim2023", - "community/neherlab/hiv-1" + "community/neherlab/hiv-1", + "community/neherlab/hiv-1/hxb2" ] } diff --git a/data_output/community/neherlab/hiv-1/hxb2/unreleased/CHANGELOG.md b/data_output/community/neherlab/hiv-1/hxb2/unreleased/CHANGELOG.md new file mode 100644 index 00000000..1f43c256 --- /dev/null +++ b/data_output/community/neherlab/hiv-1/hxb2/unreleased/CHANGELOG.md @@ -0,0 +1,3 @@ +## Unreleased + +Initial release of an HIV-1 dataset for subtype classification. diff --git a/data_output/community/neherlab/hiv-1/hxb2/unreleased/README.md b/data_output/community/neherlab/hiv-1/hxb2/unreleased/README.md new file mode 100644 index 00000000..d7323573 --- /dev/null +++ b/data_output/community/neherlab/hiv-1/hxb2/unreleased/README.md @@ -0,0 +1,35 @@ +# EXPERIMENTAL: HIV-1 group M subtype and CRF classification + +| Key | Value | +| ---------------------- | --------------------------------------------------------------------------------------------------------------------| +| authors | [Richard Neher (U Basel)](https://neherlab.org), [Thomas Leitner (LANL)](https://public.lanl.gov/tkl/) | +| data source | LANL database and Genbank | +| workflow | [github.com/neherlab/HIV-nextclade](https://github.com/neherlab/HIV-nextclade) | +| nextclade dataset path | community/neherlab/hiv-1/hxb2 | +| reference | [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) | + +This Nextclade data set aligns sequences to the HXB2 reference and finds the closest match in a reference tree build from the [2021 Super filtered Alignment](https://www.hiv.lanl.gov/content/sequence/NEWALIGN/help.html#filter) provided by LANL. +Due to extensive recombination in HIV-1 group M, the tree is not a proper phylogenetic tree, but a collection of trees inferred for each subtype or recombinant form. These individuals trees are then grafted together. Rare CRFs, URFs, or subtypes represented less then 3 times in the reference alignment are labeled as subtype `other`. + +Note that the classification is **EXPERIMENTAL** and might be unreliable for sequences that lack a close representative in the tree. +The closeness to sequences in the reference set is quantified by the `private mutations` +As a general guide, the more private mutations a sequence has, the less reliable the subtype assignment will be. + +Note that alignments of sequences that are far from the subtype B HXB2 reference will have + +## Reference sequence HXB2 (NC_001802) + +This data set uses the NCBI reference sequence [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) based on the HXB2 genome [K03455](https://www.ncbi.nlm.nih.gov/nuccore/K03455.1). The primary reason for choosing it is to ensure amino acid substitutions in conserved proteins such as `Pol` are numbered consistently. +Note that this sequence as a few problems, including a premature stop-codon in `nef`. + +## Treatment of indel-rich regions + +There are multiple regions in the HIV-1 genome where deletions and insertions are common. Such regions are often not consistently aligned when aligning sequences individually to a reference. For the purposes of finding closely matching sequences in the reference tree, these regions are ignored. 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+TACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAA +ACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAG +CTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGA +GAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGAT +GGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGG +GATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGAC +CAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAG +CTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAG +ATTGTAAGACTATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAG +CATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCC +AAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGA +TTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGCCAGAAATTGCAGGGCCCCTA +GGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGA +GACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTC +TTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGA +CAACAACTCCCCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCC 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+CAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAA +GTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTC +TGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAA +AGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACT +TTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTA +GGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAG +CATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGG +ATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGAC +ACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCT +CCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGC +CATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTTCAGAATTGGGTGTCGACATA +GCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTA +GAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAA +AAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGC +AGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCT +CTATCAAAGCAGTAAGTAGTACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCA +TTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGG +AAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAA +GACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATG +GGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCAC +AGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGA +TGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCAC +AGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAA +AAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAA +GCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGAAGAATGA +TACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGATAAAAAACTG +CTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTA +TAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAA +CACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTA +TTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGG +ACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAAC +TCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGTCAATTT +CACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAATTAATTGTAC +AAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATT +TGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAA +ATGGAATAACACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAA +AACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAA +TTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAA +TAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACCCTCCC +ATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCC +TCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGA +TGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGA +CAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGC +ACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGC +TTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCCTCAATGACGCT +GACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAG +GGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCA +GGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGG +TTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAA +ATCTCTGGAACAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAA +TTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGA +ACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAA +TTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAAT +AGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTT +TCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGG +TGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTG +GGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGAT +TGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTG +GAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGC +CACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTG +TAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATA +AGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAA +TGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAAC +ATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAG +CACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGA +CTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGC +TAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCT +ACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTG +GATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAG +AGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAG +TGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATC +CGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACT +TTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATAT +AAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAG +CTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTT +C diff --git a/data_output/community/neherlab/hiv-1/hxb2/unreleased/sequences.fasta b/data_output/community/neherlab/hiv-1/hxb2/unreleased/sequences.fasta new file mode 100644 index 00000000..a0000b01 --- /dev/null +++ b/data_output/community/neherlab/hiv-1/hxb2/unreleased/sequences.fasta @@ -0,0 +1,4803 @@ +>B.US.2013.0.505_0390a.WG12.MG196745 MG196745 +GATGGGTGCGAGAGCGTCAATATTAAGCGGGGGAAAATTAGATAGATGGGAAAAAATTCG +GCTAAGGCCAGGGGGAAAGAAAATGTATAAATTAAAACATATAGTATGGGCAAGCAGGGA +GCTAGAACGATTCGCAGTTAATCCCGGCCTGTTGGAAACATCAGAAGGCTGTAGACAGAT +ACTAGGACAGCTACAACCATCTCTTCAGACAGGATCAGAAGAACTTAAATCATTATATAA +TACAGTAGCAACCCTCTATTGTGTACATCAAAGGATAGAAATAAAAGACACCAAGGAAGC +TTTAGATAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAAGCAACAGCTGA +CACAGGAAACAACAGTCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATGCAAGGGCA +AATGGTACATCAGGCTCTATCACCTAGGACTTTAAATGCATGGGTAAAAGTAGTAGAAGA +GAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTGTCAGAAGGAGCCACCCC +ACAAGATTTAAATACCATGCTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTT +AAAAGAGACAATCAATGAGGAAGCTGCAGACTGGGATAGAGTGCATCCAGTGCATGCAGG +GCCTGTTGCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAGTTACTAG +TACCCTTCAGGAACAAATAGGATGGATGACAAGTAATCCACCTATCCCAGTGGGAGAAAT +ATATAAAAAATGGATAATCATGGGATTAAATAAAATAGTAAGGATGTATAGCCCCACCAG +CATTTTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACAGGTTCTA +TAAAACTCTAAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTT +GTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATCTTAAAAGCATTAGGACCAGCAGC +TACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCATAAAGCAAG +AGTTTTGGCTGAAGCAATGAGCCAGGTAACAAATTCAGCTAATATAATGATGCAGAGAGG +CAATCTTGGGAACCAAAGGAAGATTGTTAAGTGTTTCAATTGTGGCAAAGTAGGACACAT +AGCCAAAAATTGCAGGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGGCA +CCAAATGAAAGATTGTAATAATGAGAAACAGGCTAATTTTTTAGGGAAAATCTGGCCTTC +CCACAGGGAAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGA +AGAGAGCCTCAGGTTCGGGGGGGAGACAACAACTTCCCCTCCGAAGCAGGAGTCGATAGA +CAAGGACCCGTATCCTTTGACCTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGTCACA +GTAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGACACAGGAGCAGATGATACAGTA +TTAGAAGAAATGAATTTGCCAGGAAGGTGGAAACCAAAAATGATAGGGGGAATTGGAGGG +TTTATCAAAGTAAGACAGTATGATCAGATACCCATAGAGATCTGTGGACATAAAGCTATA +GGTACAGTATTAGTAGGACCAACCCCTGTCAACATAATTGGAAGAAATCTGTTGACTCAG +ATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAG +CCAGGGATGGATGGGCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCA +TTAATGGAAATTTGTACAGAAATGGAAAAGGAAGGAAAAATCTCAAAAATTGGGCCTGAA +AATCCATATAATACTCCAGTATTTGCTATAAAGAAAAAGGACAGTACTAAATGGAGAAAA +TTAGTAGATTTCAGAGAACTTAATAAGAAAACTCAAGACTTCTGGGAAGTTCAATTAGGA +ATACCACATCCCGCAGGGTTGAAAARGAAAAAATCAGTAACAGTACTGGATGTGGGTGAT +GCATATTTTTCAGTTCCCTTAGATGAAAACTTCAGGAAGTATACTGCATTTACCATACCT +AGTATAAACAATGCGACACCAGGGACTAGATATCAGTACAATGTACTTCCACAGGGATGG +AAAGGATCACCAGCAATATTCCAAAGTAGCATGATAAAAATCTTAGAGCCTTTTAGAAAA +CAAAACCCAGAAGTAGTTATCTACCAATACATGGATGATTTGTATGTAGGATCTGACCTA +GAAATAGAACGGCATAGAACAAAAGTAGAAGAACTGAGACAACATCTGTTGAAGTGGGGA +TTGACCACACCAGACAAAAAACATCAAAAGGAACCCCCATTTCTCTGGATGGGTTATGAA +CTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTACCAGAAAAAGACAGCTGGACT +GTCAATGACATACAGAAGTTAGTGGGAAAATTGAATTGGGCAAGTCAGATTTACCCAGGA +ATTAAAGTAAGGCAATTATGTAAACTCCTTAGGGGACCCAAAGCGCTAACAGAAGTAGTA +GCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGGGAAATTCTAAGAGAACCA +GTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGG +CAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAG +TATGCAAGAATGAGAGGTGCCCACACTAATGATGTAAGACAATTAACAGAGGCAGTGCAA +AAAATATCCACAGAAAGCATAGTAATATGGGGAAGGACTCCTAAATTTAAACTACCCATA +CAAAAAGAAACATGGGATATATGGTGGACAGACTATTGGCAAGCCACCTGGATCCCTGAG +TGGGAATTTGTCAATACCCCTCCTTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCC +ATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGA +AAAGCAGGATATGTTACTAACAAAGGAAGACAAAAGACTGTCACCATAACTGACACAACA +AATCAGAAAACTGAGTTACAAGCAATTCATTTAGCTTTGCAGGATTCGGGATCAGAAGTA +AACATAGTAACAGACTCACAATATGCATTAGGAATTATTCAGGCACAACCAGATAAAAGT +GAATCAGAAATAGTCAGTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAAGTCTACCTG +GCATGGGTACCAGCACATAAGGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGT +GCTGGAATCAGGAAAGTATTATTTTTAGATGGAATAGATAAGGCCCAAGAAGACCATGAA +AAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTGGTAGCA +AAAGAAATAGTAGCCAGTTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAA +GTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATC +CTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACA +GGGCAGGAAACAGCATACTTCATCTTAAAATTAGCAGGGAGATGGCCAGTAAARACAATA +CATACAGACAATGGCCCCAATTTCACCAGTACGACAGTTAAGGCCGCCTGTTGGTGGGCG +GGGATCAAGCAGGAATTTGGTATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCT +ATGAATAAAGAATTAAAGAAAATTATAGGGCAAGTGAGAGATCAGGCTGAACATCTTAAA +ACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGAG +TACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACTTACAAACTAAAGAATTA +CAAAAGCAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCC +CTTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGAC +AATAGTGAAATAAAGGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAA +CAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGAATGAGGATTAGAACATGGAAAAG +TTTAGTAAAACACCATATACATATTTCAAAGAAAGCTAAGGGATGGATTTACAAACATCA +CTATGAAAACAATCATCCAAAAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAA +ATTGGTAATAACAACATATTGGGGTCTACAAACAGGAGAAAGAGACTGGCATTTGGGTCA +GGGAGTCTCCATAGAATGGAGGAAAAGGAGCTATAACACACAAGTAGACCCTAACCTAGC +AGATCAACTAATTCATCTGTATTACTTTGATTGTTTTGCAGACTCTGCTATAAGAAAGGC +CCTACTAGGACAAATAGTTAGCTCTAGGTGTGAACATCAAGCAGGACATAACAAGGTAGG +ATCGCTACAATACTTGGCACTAACAGCATTAATAGCACCAAAGCAGAAAAAGCCACCTTT +GCCTAGTGTTGCAAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCA +CAGAGAGAGCCATACAATGAATGGACAATAGGGCTTTTAGAGGAGCTTAAGAATGAAGCT +GTTAGACACTTCCCCAGAGTATGGCTTCATGGCTTAGGGCAATATATCTATGAAACTTAT +GGGGATACTTGGGCAGGAGTGGAGGCCATAGTAAGAATCCTGCAACAACTGCTGTTTATT +CATTTCAGAATTGGGTGTCGACATAGCAGAATAGGAATTACCCAGAGGAGAACAAGAAAT +GGACCCAGTAGATCCTAGCCTAGATCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACTGC +TTGTAATACTTGCTATTGTAAACACTGTTGCCTACATTGCCAAGTTTGTTTCATGAAAAA +AGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAACGACGCAGCGCTCCTCCAGA +CAGTCAGAATAATCAAGTTCCTCTATCAAAGCAGTAAGTAATACATGTAATGTACTCTTT +ACAAATATTAGCAATAGTAGCCTTAGTAGTAGTAGCAATAATAGCAATAGTTGTATGGAC +TATAGTATTCATAGAATATAGGAAAATATTAAGACAAAAAAGAATAGACAGGTTAATTGA +TAGGATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGATGGGGACCAAGAACAACT +ATCAGCACTTATGGTGGAGATGGGGCATGATGCTCCTTGGAATGTTGATGATCTGTAGTA +CTAATCAACAATTGTGGGTCACAGTATATTATGGGGTACCTGTATGGAAGGAAGCAACCA +CAGTCCTCTTTTGTGCATCAGATGCTAAAGCACATGGTACAGAGGCACATAATGTTTGGG +CCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAATATTGGAAAATATGA +CAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAACAAATGCAAGAGGATATAATCA +GTTTATGGGATCAAAGCCTAAAGCCATGTGTAGAACTAACTCCACTCTGTGTCACTTTAA +ATTGCACTAAATTAAATCACAATGCCACTCAGAGTAACGAGACAGCAGAGGAAGGAGGAG +GAATGAAAAACTGCTCTTTCAATATCACCACAAGCATGAGAGATAAACAGCAAAAAGAAT +ATGGACTTTTCTATGACCTTGATATAGTACAAATAGATAATAGCACCTATAGGTTGAAAA +GTTGTAACACCTCAGTTATTAAACAAGCCTGTCCAAAGGTATCCTTTGAACCAATTCCCA +TACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATGATAAAACTTTTAATG +GATCAGGACCATGTACAAATGTCAGTACAGTACAATGTACACATGGAATTAGGCCAGTAG +TATCAACTCACCTACTGTTAAATGGCAGTCTAGCAGAAGGAGAAGATATAGTAATTAGAT +CTGAGAATTTCACAAACAATGCTAAAATCATAATAGTACAGCTGAACGAATCTGTAGTAA +TTAATTGTACAAGACCTAACAACAATACAAGAAGAGGTATAAATATAGGACCAGGGAGAG +CATTTTATACAACAGGAGAAATAATAGGAGATATAAGACAAGCACATTGTAACGTTAGTA +TAGTAAAATGGAACAAAACTTTAAATCTAGTAAAGGAAAAATTAAAAAAGCAGTTTAATA +ATACAACAATACTTTTTGATGAACCCTCAGGAGGGGACCCAGAAATCACAATGCACAGTT +TTAATTGTGGAGGGGAATTCTTCTACTGTAATTCAACACCACTGTTTAATGGGACTTGGC +AGAATATGACGAATATTACTGAAAACTTAAATATCACACTCCCATGCAGAATAAAGCAGA +TTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGAAGTA +TTCAATGTTCATCAAACATTACAGGGCTACTGTTAACAAGAGATGGTGGCATCACTAATA +ACACTAATAGCAGTAATGATGAGACCTTCAGACCTGGAGGGGGAGATATGAGGGACAATT +GGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCTTTAGGATTAGCACCCA +CCAGGGCAAGGAGACTAGTGGTGCAAAGAGACAAAAGAGCAGTGGGAATGGGAGCTATGT +TCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATGACGCTGACGG +TACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAAAACAACTTGCTGAAGGCTA +TTGAGGCGCAACAGCACCTGTTGCGACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAA +GAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACRGCTCCTGGGGATTTGGGGTTGCT +CTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATACTAGCTGGAGTAATAAATCTT +ACAATGACATCTGGGATAATATGACATGGATGCAGTGGGAGAGAGAAATTGACAATTACA +CAGAAGAAATATACAACTTACTAGAAAAATCGCAAAACCAGCAAGAAAAGAATGAGCAAG +AATTATTGGAATTGGATAAATGGACAAGTTTGTGGAGTTGGTTTGACATAACAAACTGGC +TGTGGTACATAAGAATATTCATAATGGTAGTAGGAGGCTTAATAGGTTTAAGAATAGCTT +TTGCTGTACTTTCTATAGCAAATAGAGTTAGGCAGGGATACTCACCCCTGTCGTTTCAGA +CCCACCACCCAAGCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGGAGAAGGTGGAG +AAGGAGGCAAATACAGATCCAGCAGATTAGTGGATGGATTCTTAGCACTTATCTGGGACG +ATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATAACAG +CGAGGACTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGGGGAACC +TCTTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTAAACGCCACAG +CTATAGCAGTAGCTGAAGGGACAGATAGGGTTATAGAAGTAGGAAGAAGAGCTTTTAGAG +CTATACTCCACATACCTACAAGAATAAGACAGGGCTTTGAAAGGGCTTTGCTATAAGATG +GGTGGCAAGTGGTCAAAAAGTAGTTTCATTGGATGGCCTAGGGTAAGGGAAAGAATGAGA +CGAGCTGAGCCAGCAGCAGAGCCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTA +GAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGG +CTAGAAGCACAAGAGGAAGAGGAGGTGGGTTTTCCAGTCAGACCTCAGGTACCTTTAAGA +CCAATGACTTACAAAGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTG +GAAGGGCTAATTTACTCTCAACAAAGACAAGATATTCTTGATCTGTGGGTCTACCACACA +CAAGGATACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGATCAGATATCCACTG +ACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGAGGAGGTAGAAAAGGCCAAT +GAAGGAGAGAATAACTGCCTGCTACACCCCATAAGCCAGCATGGGGTGGATGACCCAGAG +AAAGAAGTATTAATGTGGAAGTTTGACAGCCGCCTAGCATTTCATCATGTGGCCCGAGAA +CTGCATCCAGAATATTATAAGAACTGATGACATATAAGAACTGCTGACATCGGAACTGCT +GACATCGAGCTTTCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCTG +GGCGGGACTGGGGAGTGGCGAG +>B.BR.2010.0.10BR_PE003.KT427747 KT427747 +CGTCTGTTGTATGACTCTAGTAACTAAAGATCCCTCAGACTATCTTAGCCAGTGTGAAAA +ATCTCTAGCAGTGGCGCCCGAACAGGGACCCGAAAGCGAAAGTAGAACCAGAGGAGCTCT +CTCGACGCARGACTCGGCTTGCTGAAGCGCGCACAGCAAGAGGCGAGGGGCGGCGACTGG +TGAGTACGCCAAAACTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATAGGTGCGAGAGCG +TCGGTATTAAGCGGGGGAGAATTAGATAGATGGGAAAAAATTCAGTTAAAGCCAGGAGGA +AAGAAAAAATATAGATTAAAACATATAGTATGGGCAAGCAAGGAGCTAGAACGATTCGCA +GTCAATCCTGGCCTTTTAGAGACATCAGAGGGCTGTAGACAAATACTGCAACAGCTACAA +CCATCCCTTCAAACAGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAGTCCTC +TAYTGTGTRCATCAAAAGATAGAKGTAAAAGACACCAAGGAAGCCTTAGATAGGATCGAG +GAAGAGCAAAACAAAAGTAAGAAAARGRCRCAGCAAGCAGCAGCTGACACAGGAAATAAG +CAAGCAGCCRCTAACACAGGAAGCAGCARCCARGTCAGCCAAAATTACCCTATAGTRCAA +AATCTTCAGGGGCAAATGGTACATCARGCCATATCACCTAGAACTTTAAATGCATRGGTA +AAAGTAGTAGAAGARAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTACAGCAYTATCA +GAAGGAGCCACCCCACARGATTTAAACACCATGYTAAACACAGTGGGRGGACATCAAGCA +GCTATGCAAATGTTAAAAGAGACCATCAATGARGAAGCTGCAGAATRGGATAGATTGCAC +CCAGCACAGGCAGGGCCTGTTGCGCCAGGCCAGATGAGAGACCCAAGGGGAAGTGACATA +GCAAGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAGTAATCCACCTATC +CCAGTAGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAAAATAGTAAGAATG +TATAGCCCTACCAGTATTCTGGACATAAAACAGGGACCAAAAGAGCCTTTTAGAGACTAT +GTAGACAGGTTCTATAAAACTTTAAGAGCAGAGCAAGCTTCACAGGATGTAAAAAATTGG +ATGACAGAAACCTTGTTGGTCCAAAATTCAAACCCAGATTGCAAGACCATTTTAAAAGCA +TTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCC +GGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGCAACAGCTACTTCAACTGCC +ATAATGATGCAGAAAGGCAATTTTAGGAATCAAAGAAAGACTGTTAAGTGTTTCAATTGT +AGTAAAGACAGGCACATAGCAAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGCTRGAAA +TGTRGAAAGGAAGGACATCAAATGAAAGATTGYACTGAGAGACAGGCTAATTTTTTARGG +AAAATCTGGCCTTCCCACAAGGGRAGGCCARGGAACTTTCTCCAGAGCAGGCCAGAGCCA +ACAGCCCCRCCAGAGCCAACAGCCCCACCAGAAGAGAGCTGCAGGTTTGGGGAAGAGACA +ACAACTCCCTCTCAGAAGCAGGGGCCAATAGACAAGGAGCTATATCCTTTAACCTCCCTC +AAATCACTCTTTGGCAACGACCCCTCGTCCCAGTAAGGATAGGGGGGCAAMTAAAGGAAG +CTCTGCTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTGCCAGGAAAAT +GGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGAGCAGA +TACTCGTAGAAATCTGTGGGCACAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTG +TCAACATAATTGGAAGAAATCTGTTGACGCAGATTGGCTGCACTTTAAATTTCCCCATTA +GTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAAC +AATGGCCATTGACAGAARAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAA +AGGAAGGAAAAATTTCAAAAATTGGGCCCGAAAACCCATACAATACTCCAATATTTGCCA +TAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTGGATTTCAGAGAACTTAATAAGA +GAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAGAAGA +AAAAATCTGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAA +ACTTCAGGAAGTATACTGCCTTTACCATACCCAGTGTTAACAATGAAACACCAGGGGTTA +GATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTA +GCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTACCAAT +ACATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAG +AGGAACTGAGACAACATCTGTTGAAGTGGGGATTTACCACACCAGACAAAAAACATCAGA +AGGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAAC +CTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAA +AATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAACTCC +TTAGGGGAACCAAATCACTAACAGAGGTAGTACCACTAACAGTAGAAGCAGAGTTAGAGC +TGGAAGAAAACAGGGAGATTTTAAAAGAACCAGTACATGGAGTTTACTATGACCCATCAA +AAGACTTAATAGCAGAAATACAGAAGCAAGGGCAAGGTCAGTGGACATATCAAATATATC +AAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTA +ATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAACCACAGAGAGCATAGTAATAT +GGGGAAAGATTCCTAAATTTAAACTACCCATACAAAAGGAAACATGGGAAGCATGGTGGA +TAGAATATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAG +TAAAATTATGGTACCAGTTAGAAAAGGAACCCATTGTGGGAGCAGAGACTTTCTATGTAG +ATGGAGCAGCTAGTAGGGAAACTAGATTAGGAAAAGCAGGATATGTTACTGACAGAGGAA +GACAAAAAATTGTTCCCCTAACGGACACAACGAATCAGAAGACTGAGCTACAAGCAATTC +ATCTAGCTCTGCAGGATTCGGGGTCACAAGTAAATATAGTAACAGACTCACAATATGCAT +TAGGAATTATTCAAGCACAACCAGATAAAAGTGAATCAGAGATAGTCAATCAAATAATAG +AGCAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTG +GAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAAAGTACTATTTTTAG +ATGGAATAGATAAGGCCCAAGAGGAGCATGAAAAATATCACAATAATTGGAGATCAATGA +CTAGTGAGTTTAACATACCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGACAAAT +GTCAGCAAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAGC +TAGACTGTACACACTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGAT +ATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAAGAAACAGCATACTTTCTCTTAA +AATTAGCAGGAAGATGGCCAGTAAAAACAATACACACAGACAATGGCAGTAATTTCACCA +GTGCTACAGTTAAGGCCGCCTGTTGGTGGGCGGGGATCAAGCAGGAGTTTGGTATTCCCT +ACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAGATTATAG +GACAGGTAAGAGATCAAGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTACTTATCC +ACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCGGGAGAAAGAATAATAGACA +TAATAGCAACAGACATACAAACCAAAGAACTACAAAAACAAATTACAAAAATACAAAATT +TTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCAGCAAAGCTTCTCT +GGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAGATAAAAGTAGTGCCAAGAA +GAAAAGCAAAGATCCTTAGGCATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAA +GTAGACAGGATGAGGATTAATACATGGAAAAGTTTAGTAAAATACCATATGTATATTTCA +AAGAAAGCTAATAAATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGT +TCAGAAGTACACATCCCACTAGGGGATGATACCTTAGTAATAACAACATATTGGGGTCTG +CATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAGG +AGATACAGTACACAAGTAGACCCTAACCTAGCAGACCAACTAATCCACATGTACTATTTT +GATTGTTTTTCAGAATCTGCTATAAGGAATGCCATATTAGGGGATAGAGTTAGACCTAGG +TGTGAGTATCAAGCAGGACATAATAAGGTAGGATCTCTACAGTACTTGGCACTAACAGCA +TTAATAAAACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTAGGAAACTGACAGAGGAT +AGATGGAACAAGCCCCACAGGACCACGGGCCGCAGAGGGAACCATACAATGAGTGGACAC +TAGAGCTTTTAGAAGAACTTAAGAATGAAGCTGTTAGACATTTCCCTAGGCCATGGCTCC +ATAACTTAGGACAATATATCTATGAAACTTATGGAGACACTTGGGCAGGAGTGGAAGCCA +TAATAAGAATTCTGCAACAACTGCTGTTTATTCATTTCAGAATTGGATGTCAACATAGCA +GAATAGGCATTATTCGACACAGGAGAGCAAGGAATGGAGCCAGTAGATCCTAGRCTAGAG +CCCTGGCAGCATCCAGGAAGTCGGCCTACAACTCCTTGTACCAAATGCTATTGTAAAAAA +TGTTGCTTTCATTGCCAAGTTTGCTTTGTAACAAAAGGCTTAGGCATCTCCTATGGCAGG +AAGAAGCGGAGACAGCGACGAAGACCTTCTCAAGACAGTAAGACTCATCAAGCTTCTCTA +CCAAAGCAGTAAGTAGTACATGTAATGAACCCTTTAAMCATAGYATCAATAGCAGGCTTA +GTAGTAGCAGCAGTAMTAGCAATAGTTGTGTGGACTATAGTGTACCTAGAATATAGGAAA +ATATTAAAACAAAGAAAAATAGACAGGTTAATTGATAGAATAAGGGAAAGAGCAGAAGAC +AGTGGCAATGAGAGCGAGGGGGATCATGAAGAGTTGGCAACACTTGTGGAGATGGGGCAC +CATGCTCCTTGGGATGTTGATGATCTGTAATGCTACAGAACAACTGTGGGTCACAATCCA +TTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAA +AGCAGTTGAAACAGAGGCACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCC +TAACCCACAAGAAATAAATTTGGAAAATGTGACAGAAAATTTTAACATGTGGAAAAATGA +CATGGCAGAACAGATGCATCAGGATATAATCAGTTTATGGGACCAAAGCCTAAAGCCATG +TGTAAAATTAACCCCACTCTGTGTTATTTTAAATTGCACTGATGTKRGKAMTGCTAATAG +TACTACTAATGATACTAAGAGGACTGTAGAAAACAGTATGGAGGGAGAAATAAAAWAGTG +CTCTTTCAATATCACCACAGGCATAAGAGATAAGGTGCGGAAAGAATATGCATATTTTAA +TAAACTTGATGTAACACCAATAGATGATACAGGTAATAATACAGACTATACAAAATATAC +CTTAATAAATTGTAACACCTCAGTCATTACACAAGCCTGTCCTAAGACAACCTTTGAACC +AATTCCMATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGTAATAATAAGAC +ATTCAATGGAACAGGACCATGTAAAAATGTTAGCACAGTACAATGTACACATGGAATTAG +GCCAGTAGTGTCAACTCAACTACTGTTAAATGGCAGTCTAGCAGAAGAAGACATAGTAAT +TAGATCTGAAAATCTCACAGACAATACTAAAACCATAATAGTACAGCTGAACTCATCTGT +AACAATTAATTGTACAAGACCCAACAACAATACAAGAAAAGGTATACATATGGGATGGGG +AAGAGCATTTTATGCAACAGGACAAATAATAGGAAATATAAGACAAGCACATTGTAACCT +TAGTACAGCAGATTGGAACAGCACTTTAGAACAGATAGCTAGAAAATTAAATGAACACTT +TAATAAAACAAYARTWKTTTTTAATCAATCCTCAGGAGGGGACCCAGAAATTGTAATGCA +CAGTTTTAATTGTGGAGGAGAATTTTTCTATTGTAATACAACACAACTGTTTAATGGTAA +TTTGAATAACAGTATTTGGACATTTAATGGTAATAATAAGACTGAGAATATCACACTCCC +ATGCAGAATAAAACAAATTATAAACAGGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCC +TCCCATCCAAGGACTAATTAGATGTTCATCAAAGATTACAGGGGTGCTATTAACAAGAGA +TGGTGGTWYAGRGAACAACGGGTCTGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGA +CAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAGCCAATAGGAGTAGC +ACCCTCCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAATAGGAACGCTAGG +AGCTATGTTCCTTGGGTTCTTGGGAACAGCAGGAAGCACTATGGGCGCAGCGTCATTGAC +GCTGACGGCACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATTTGCT +GAGGGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCT +CCAGGCAAGAGTCCTGGCTGTGGAGAGATACCTAAGGGATCAACAGCTCCTAGGGATCTG +GGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATAAGACTTGGAGTAA +TAAATCTATGCATGACATTTGGGATAACATGACCTGGATGGAGTGGGAGAGAGAAATTGA +CAATTACACACAAGTAATATACAACTTGCTTGAAGAATCGCAGAACCAACAAGAAAAAAA +TGAACAAGACTTATTGGCATTGGATAAGTGGGCAAGCTTGTGGAATTGGTTTAACATATC +AAATTGGCTGTGGTATATAAAAATATTCATCATGATAGTAGGAGGCTTAGTAGGGTTAAG +AATAGTTTTTGTTGTACTTTCACTAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTC +ATTCCAGACCCGCCTCCCAGCCCCGAGGGGACTCGCCAGGCCCGAAGGAACCGAAGAAGA +AGGTGGAGAGAGAGACAGAGACACATCAACAAGATTAGTAACTGGATTCTTAGCACTCAT +CTGGGTCGACTTGAGGAGCCTGTGCCTCTTCATCTACCACCAATTGAGAGACTTACTCTT +GATTGCAACAAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAAYAYCT +GTGGAGYCTCCTGCAGTATTGGRGYCAGGAACTAAAGARTAGTGCTATTARTTTGCTTAA +CGCCACAGCCATAGTAGTAGGCGAGGGGACAGATAGGATTATAGAAGCAGTACAAAGACT +TGGTAGAGCTGTTCTCCACATACCTAGAAGAATAAGACAGGGCGCAGAAAGGGCTTTGCA +ATAAGATGGGGGGCAAGTGGTCAAAAAGTAGGATTGTCGGATGGTCTGCTGTGAGGGAAA +GAATGAGACGAGCTGAGCCAGCAGCGAGACGAGCTGAGCCAGCAGCAGACGGGGTGGGAG +CAGTATCTCGAGATTTAGAAAAATATGGAGCAATCACAAGTAACAACACAGCAGCTACTA +ATGCTGATTGTGCCTGGCTAGAAGCACAAGAAGAGGAGGAGGTAGGTTTTCCAGTCAGAC +CTCAGGTACCTTTAAGACCAATGACTTACAAAGCAGCTGTAGATCTTAGCCACTTTTTAA +AAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCACGAGGAGACAAGAGATCCTCGATC +TGTGGGTCTACCACACACAAGGCTTCTTCCCTGATTGGGACAACTACACACAAGGGCCAG +GGGTCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTACCAGTTGACCCAGAGC +AGGTAGAAAAGGCCAGTGAAGGAGAAACCAACTGCTTGTTACACCCTATGAACCAGCATG +GAGTGGATGACCCAGAGAAAGAAGTGTTGCAGTGGAAGTTTGACAGTCGCCWAGCATTTC +ATCACGTGGCCCGAGAGCTGCATCCGGAATACTACAAA +>B.US.2004.0.ES8_43.EF363126 EF363126 +TGGAAGGGCTAATTTATTCCCAGAAAAGACAAGAGATCCTTGATCTGTGGGTCTACCACA +CACAAGGCTTCTTCCCTGACTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCCC +TGACCTTCGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAAGTAGAAGAAGCCA +ATGAAGGAGAGAACAACTGCTTGTTACACCCTATGAGCCAGCATGGGATGGATGACCCAG +AGAAAGAAGTGCTAGTATGGAGGTTTGACAGCCGCCTAGCATTTCATCACTTGGCCCGAG +AGCTGCATCCGGAGTTCTACAAGGACTGCTGACACTGTGCTTTCTACAAGGGACTTTCCG +CTGGGGATTTCCAGGGGAGGCGTGACCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGAT +GCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATTTGA +GCCTGGGAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCT +TTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCT +CAGACCATTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCGGAAA +GCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACG +GCAAGAGGCGAGAGGCGGCGACTGGTGAGTACGCCGAAATTTTTGACTAGCGGAGGCTAG +AAGGAGAGAGATGGGTGCGAGAGCGTCGGTATTAAGCGGGGGAGAATTGGATAGATGGGA +GAAAATTCGGTTAAGGCCAGGAGGAAAGAAAAAGTACAAATTAAAACATATAGTATGGGC +AAGCAGGGAGCTAGAACGATTCGCAGTCAATCCTGGCCTACTAGAAACATCAGGAGGCTG +TAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAGGAACTTAGATC +ATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGATGTAAAAGACAC +CAAAGAAGCTTTAGAGAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCA +AGCAGCAGCTGACACAGGAAACAGCAGCCAGGTCAGCCAAAATTACCCTATAGTGCAGAA +CATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAA +AGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGA +AGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGC +CATGCAGATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCATCC +AGTACATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGC +AGGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAATAATCCACCTATCCC +AGTAGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAAAATAGTAAGGATGTA +TAGTCCTTCCAGCATTCTGGACATAAAACAAGGACCAAAGGAACCCTTTAGGGACTATGT +AGATCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAAGTAAAAAATTGGAT +GACAGAAACCTTGCTGGTCCAAAATTCGAACCCAGATTGTAAAACTATTCTAAAAGCATT +GGGGCCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGC +CCATAAAGCAAGAGTTTTGGCGGAAGCAATGAGCCAAGTAACAAATTCAGCCACCATAAT +GATGCAGAAAGGCAATTTTAGGAACCAAAGAAAGGCTGTTAAGTGTTTCAATTGCGGCAA +AGAAGGGCACATAGCCAAAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGG +AAGGGAAGGACACCAAATGAAAGATTGTACAGAAAGACAGGCTAATTTTTTAGGGAAAAT +CTGGCCTTCCCACAAGGGGAGGCCAGGGAACTTTCTTCAGAGCAGGCCAGAGCCAACAGC +CCCATCAGCCCCACCAGCAGAGAGCTTCAGGTTTGGGGAAGAGATAACAACTCCCCCTCA +GAAACAGGAGACGCTGATAGACCTGGACAAGGAACTGTATCCCTCAGCCTCCCTCAAATC +ACTCTTTGGCAACGACCCCTTGTTAAAATAAAGATAGGGGGGCAAGTAAAGGAAGCTCTA +TTAGACACAGGAGCAGATGATACAGTGTTAGAAGAAATAAGTTTGCCAGGAAGATGGAAA +CCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAACAGTATGATCAGATACCC +ATAGAAATCTGTGGGCATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAAC +ATAATTGGAAGAAATCTGTTGACTCAACTTGGTTGCACTATAAATTTTCCCATTAGTCCT +ATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGG +CCATTGACAGAAGAGAAAATAAAAGCATTAGTAGAGATCTGTACAGAAATGGAAAAAGAA +GGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAG +AAAAAAGACAGTACCAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACT +CAGGACTTCTGGGAGGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAAAAAA +GCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTC +AGGAAGTATACTGCATTTACCATACCTAGTATGAACAATGAGACACCAGGGATTAGGTAT +CAGTACAATGTGCTCCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATG +ACAAAAATCTTAGAGCCTTTTAGAAATCAAAATCCAGACATAGTTATCTATCAATACATG +GATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAA +CTGAGGGAACATCTGTTGAAATGGGGATTTACCACACCAGACAAAAAACATCAGAAAGAA +CCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTGCAGCCTATA +GTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAAATTG +AATTGGGCAAGTCAGATATACCCAGGGATTAAAGTAAAGCAATTATGTAGACTCCTTAGG +GGAGCCAAGGCACTAACAGAAGTAATACCACTAACAAAAGAAGCAGAACTAGAACTGGCA +GAAAACAGGGAAATTCTAAAAGAGCCAGTACATGGAGTGTATTATGACCCAACAAAAGAC +TTAATAGCAGAAATACAGAAGCAGGGGCAAGACCAATGGACGTATCAAATTTATCAGGAG +CCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAAAGAGGGGTACCCACACTAATGAT +GTAAAACAGTTAACAGAGGCAGTGCAAAAAGTAAGCACAGAAAGTATAGTGATATGGGGA +AAGATTCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAACATGGTGGACAGAG +TATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAA +TTATGGTACCAGCTAGAGAAAGAACCCATAATAGGAGCAGAAACATTCTATGTAGATGGG +GCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAACAGAGGGAAACAA +AAAGTTATCTCCCTAACTGACACAACAAATCAGAAAACTGAGTTACATGCAATTCATCTA +GCTTTACAGGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGG +ATCATTCAAGCACAGCCAGATGAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAG +TTAATAAAAAAGGACAAAGTCTACCTGACATGGGTACCAGCGCACAAAGGAATTGGAGGA +AATGAACAAGTAGATAAATTAGTCAGTACTGGAATTAGGAAAGTACTATTTTTAGACGGA +ATAGATAAAGCCCAAGAAGAACATGAGAAATATCACAGCAATTGGAGAGCAATGGCTAGT +GATTTTAACCTGCCACCTGTGGTAGCCAAAGAAATAGTAGCCAGCTGTGATAAATGTCAG +CTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTAGAT +TGTACACATTTAGAAGGAAAAATTATCATAGTAGCAGTTCATGTAGCCAGTGGGTATATA +GAAGCAGAAGTCATTCCAGCAGAGACAGGGCAGGAAACAGCATACTTTATCTTAAGGTTA +GCAGGAAGATGGCCAGTAAAAACAATACATACAGACAATGGCAGCAATTTCACCAGTACT +ACAGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAACAGGAATTTGGCATTCCCTACAAT +CCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAG +ATAAGAGATCAGGCTGAGCATCTCAAGACAGCAGTACAAATGGCAGTATTCATTCACAAT +TTTAAAAGAAAAGGGGGGATTGGGGGGTGCAGTGCAGGGGAAAGAATAGTAGACATAATA +GCATCAGACATACAAACTAAAGAATTACAAAAACAAATTTCAAAACTTCAAAATTTTCGG +GTTTATTTCAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAACTTCTCTGGAAA +GGTGAAGGGGCAGTAGTAATACAAGATAATAGTGAAATAAAAGTAGTGCCAAGAAGAAAA +GCAAAGATACTTAGGCATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGA +CAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATATCTCAAAGAA +AGCTGACAGATGGTTTTATAGACATCATTTTGAAAGCACTCATCCAAAAATAAGTTCAGA +AGTACACATCCCATTAGGGGATGCAGAATTGGTAATAATAACATATTGGGGTCTACATAC +AGGAGAAAGAGATTGGCATTTGGGACAAGGAGTCTCCATAGAATGGAGGAAAAAGAGATA +TAGCACACAAGTAGACCCTAACCTAGCAGACCAACTGATTCATCTGTATTACTTTGATTG +TTTTACAGAATCTGCCATAAGAAATGCCATCTTAGGAAATAGAGTTAGTCCTAGGTGTGA +ATATCAAGCAGGACATAACAAGGTAGGATCCCTACAGTACTTAGCACTAGCAGCATTAGT +AACACCAAAAAAGACAAAGCCACCTTTGCCTAGTGTCGCGAAACTGACAGAGGATAGATG +GAACAAGCCCCAGAGGACCAAGGGCCACAGAGGGAGCCATACAATGAATGGACACTAGAG +CTTTTAGAGGAGCTTAAGAGTGAAGCTGTGAGACATTTTCCTAGGCTATGGCTCCATAGC +TTAGGGCAACATATCTATGAAACTTATGGGGACACTTGGGCAGGAGTGGAAGCCATAATA +AGAATTCTGCAACAACTGCTGTTCATTCATTTCAGAATTGGGTGTCAACATAGCAGAATA +GGCATTACCCGACAGAGGAGAACAAGAAATGGAGCCAGTAGATCCTAGACTGGAGCCCTG +GAAGCATCCGGGGAGCCAGCCTAGGACTGCCTGTACCACTTGCTATTGTAAAAGGTGTTG +CTATCATTGCCAAACTTGCTTCATAACGAAAGGCTTAGGCATCTCCTATGGCAGGAAGAA +GCGGAGACAGCGACGAGGAGCTCATCAGGACAGTGAGACTCATCAAGCGTCTCTATCAGA +GCAGTAAGTAGTACATGTAATGCAACCTTTACAGATATTAGCAATAGTAGGATTAGTAGT +AGCAGCAATAATAGCAATAATTGTATGGTCTATAGTACTTATAGAATATAGGAAAATATT +AAGACAGAAAAAAATAGACAGGATAATTGATAGAATAAGAGAAAGAGCAGAAGACAGTGG +CAATGAGAGTGATGGAGACCAGGAAGAATTGGCAGCACTGGTGGTGGAAAGGGGGCATCA +TGCTCCTTGGGATGTTAATGATCTGTAATGCTGAAGAACAGTTGTGGGTCACAGTCTATT +ATGGGATACCTGTGTGGAAAGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAG +GATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCA +ACCCACAAGAAGTAGTAATGGCAAATGTGACAGAAAATTTTAACATGTGGAAAAATAACA +TGGTAGAACAGATGCATGAGGATATAATTAGTTTATGGGATCAAAGTCTAAAACCATGTG +TAAAATTAACCCCACTCTGTGTCACTTTAAATTGTACTGATGTGGAGAAGAATAATACTA +CTAATACCACAACTACTAGTACCACAACTACTATTACCCCACTAATGATGGAGAAGGGAG +AAATAAAAAATTGCTCTTTCAAAATCACCACAAACATGAGAGATAAGGTGCAGAAAGAAT +TTGCACTTTTTCATAAATTTGATGTAGTACGAATGGAAGAAGATAATACTGATAATACTA +GCTATAGGTTGGTAAGTTGTAACACCTCAACCATTACACAGGCCTGTCCAAAGGTATCCT +TTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTGAAGTGTAATA +ATAAGGAGTACAATGGAACAGGACCGTGTACAAATGTTAGCACAGTACAATGTACACATG +GAATTAGGCCAGTAGTATCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGAAGATA +TAGTAATTAGCTCTGCCAATCTCACAAACAATGCTAAAATCATAATAGTGAAACTGAATG +AATCTGTAGCACTGAACTGTACAAGACCCAACAACAATACAAGAAAAAGTATACCTATAG +GACCAGGCAGAGCATTTTATGCAACAGGAAATATAATAGGAGATATAAGACAAGCACATT +GTAACCTTAGTAGTACACAATGGAGTAACACTTTAAAAAGGGTAGCTATAAAATTAGGAG +AACAATTTAATAATAAAACAATAGCCTTTAAACAATCCTCAGGAGGGGACCCAGAAATTG +TAATGCTCAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAACACATCACAACTGTTTA +ATAACACTTGGAATGGTACTGAGTTAAGTAATAGTAAAGAAAATGGTAATATCACACTCC +AATGCAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGGAAAGCAATGTATGCCC +CTCCCATCAGAGGACAAATTAGATGTGTGTCAAATATTACAGGGCTGCTATTAACAAGAG +ATGGTGGTACAAACAGCACCACCGAGACCTTCAGGCCTGCAGGAGGAAATATGAGGGACA +ATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAATAGCAC +CCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGCGGGAATAGGAGCTT +TTTTCCTTGGGTTCTTGGGACTAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGA +CGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGG +CTATTGAGGCGCAACAGCACATGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGG +CAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAGCAGCTCCTAGGGATTTGGGGTT +GCTCTGGAAAACTCATCTGCACCACTGCTGTGCCTTGGAATAGTAGTTGGAGTAATAAAA +CTATGGACCAGATTTGGAATCACACAACCTGGATGCAATGGGAAAGAGAAATTGATAATT +ATACAGACTTAATATACTCCTTAATTGAAGACTCGCAAAACCAACAAGATAAGAATGAAC +AAGAATTATTGGAATTAGATAAATGGGCAAATTTGTGGAATTGGTTTGACATAACAAACT +GGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTAGTAGGTTTAAGAATAG +TTTTTATTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCCTTATCGTTCC +AGACCCGCCTCCCAGCTCAGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAAGAAGGTG +GAGAGCGAGACAGAGACAGATCCGAATCCTTAGTGAATGGATTCTTAGCAATCATCTGGG +TCGACCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTG +TGACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAGATCCTCAAATACTGGTGGA +ATCTCCTGCAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAACGCCA +CCGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTGTTACAAAGAGCTTGGA +GAGCTATTCTCCACATACCTACAAGAATAAGACAAGGCTTGGAAAGGGCTTTGCTATAAG +ATGGGTAATAAGTGGTCAAAAAGTAAGCTGGGGGGATGGTTCACTGTAAGGGAAAGAATG +AGAAGAACTGAACCAGCAGCAGATGGGGTGGGACCAGCATCTCGGGACCTAGAAAGACAT +GGAGCACTCACAAGTAGCAATACAGCAGCTACCAATGCTGATTGTGCCTGGCTAGAAGCA +CAAGAGGAGGAGGAGGTGGGTTTTCCAATCAGACCTCAGGTACCTTTAAGACCAATGACT +TATAAGTCAGCTCTGGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTA +ATTTATTCCCAGAAAAGACAAGAGATCCTTGATCTGTGGGTCTACCACACACAAGGCTTC +TTCCCTGACTGGCAGAACTACACACCAGGGCCAGGGACCAGATATCCCCTGACCTTCGGA +TGGTGCTTCAAGCTAGTACCAGTTGATCCAGAGAAAGTAGAAGAAGCCAATGAAGGAGAG +AACAACTGCTTGTTACACCCTATGAGCCAGCATGGGATGGATGACCCAGAGAAAGAAGTG +CTAGTATGGAGGTTTGACAGCCGCCTAGCATTTCATCACTTGGCCCGAGAGCTGCATCCG +GAGTTCTACAAGGACTGCTGACACTGTGCTTTCTACAAGGGACTTTCCGCTGGGGATTTC +CAGGGGAGGCGTGACCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATGCTGCATATAA +GCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATTTGAGCCTGGGAGCT +CTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTTGAGTGCTTC +AAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCATTTT +AGTCAGTGTGGAAAATCTCTAG +>B.US.2012.0.505_0997a.WG03.MG196879 MG196879 +CTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTAGAAAATCTCTAGCAGTGG +CGCCCGAACAGGGACTTGAAAGCGAAAGAGAAACCAGAGGAGCTCTCTCGACGCAGGACT +CGGCTTGCTGAAGCGCGCACAGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAA +CTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCGGTATTAAGCGG +GGGAGAATTGGATAGATGGGAAAGAATTCGGCTAAGGCCAGGGGGAAAGAAAAAATATAG +ACTAAAACATATAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCAGTTAATCCTGGCCT +GTTAGAAACAGCAGAAGGCTGTAAACAAATACTGGAACAGCTACAACCAGCCATTCAGAC +AGGATCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCA +AAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGATAAAATAGAGGAAGAGCAAAACAA +AAGCAAGAAAAAGGTACAGAAAGTAGCGGCTGACGCAGGAAACAGCAGCAATGTCAGCCA +AAATTACCCTATAGTGCAGAACGGCCAGGGGCAAATGGTACATCAGGCCATATCACCTAG +AACTTTAAATGCATGGGTAAAAGTAATAGAAGAGAAGGCTTTCAGCCCAGAAGTAATACC +CATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACAC +AGTGGGGGGACATCAAGCAGCTATGCAAATGTTAAAAGAAACCATTAATGAGGAGGCTGC +AGAATGGGATAGATTGCATCCAGCGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGA +ACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGAT +GACAGGTAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATAATCCTGGGATT +AAATAAGATAGTAAGGATGTATAGCCCTGTCAGCATTCTGGACATAAGACAAGGACCAAA +AGAACCCTTTAGAGATTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTC +ACAGGAGGTGAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCAAACCCAGATTG +CAAAACTATTTTAAAAGCATTGGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATG +TCAGGGAGTGGGAGGACCCGGCCATAAGGCAAGAATTTTGGCGGAAGCAATGAGCCAAGT +AACAAATTCAGCTACCATAATGATGCAGAGAGATAATTTTAGGAATCAAAGAAAGACTGT +TAAGTGCTTCAATTGTGGCAAAACAGGGCACATAGCCAAAAATTGCAGGGCTCCTAGGAA +AAGGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGCATTGAGAAGCA +GGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGAAGGCCAGGGAATTTTCCTCA +GAGCAGAACAGAGCCAACAGCTCCACCAGAAGAGAGCTTCGGGTTTGGGGAAGAGATAAC +AACTCCCTCTCAGAAGCAGGAGCCGATAGACAAGGAACGGTATCCTTTAACTTCCCTCAG +ATCACTCTTTGGCAACGACCCCTCGTCACAGTAAAAATAGGGGGGGCAACTAAAGGAAGC +TCTATTAGATACAGGAGCAGATGATACAGTACTAGAAGCAATGAATTTGCCAGGGAGATG +GAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGAGAATATGATCAGAT +ACCCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGT +CAACATAATTGGAAGAAATCTGTTGACGCAGATTGGTTGCACTTTAAATTTTCCCATAAG +TCCTATTGAAACTGTACCAGTAAAATTAAAACCAGGAATGGATGGCCCAAAAGTTAAACA +ATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAAATGGAAAA +GGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCAAT +AAAGAAAAAAGACAGTACTAAATGGAGARAATTAGTAGATTTCAGAGAACTTAATAAAAG +AACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCTGCAGGGTTAAAAAAGAA +AAAATCAGTAACAGTATTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATAAAGA +CTTCAGGAAGTATACTGCATTCACCATACCTAGTGTAAACAATGAGACACCAGGGATTAG +ATATCAGTACAATGTGCTTCCACAGGGATGGAAGGGATCACCAGCAATATTCCAAAGTAG +CATGATAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATA +CATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGA +AGAGCTGAGACAACATCTGTTAAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAA +AGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCC +TATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGAAA +ATTAAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTTAGGCAATTATGTAAACTCCT +TAGGGGAGCCAAAGCATTAACAGAAGTAATACCATTAACAGAAGAGGCAGAACTAGAACT +GGCAGAAAATAGGGAAATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCTTCAAA +AGACTTAATAGCAGAAATACAGAAACAGGGGCAGGGCCAATGGACATATCAAATTTATCA +GGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAGTGAGGGGTACCCACACTAA +TGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAGAAGGCATAATAATATG +GGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAAGAAACATGGGAAATATGGTGGAC +AGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGT +AAAATTATGGTACCAGTTAGAAAAGGAACCCATAGCAGGGGCAGAAACTTTCTATGTAGA +TGGGGCAGCTAACAGGGAAACTAAATTAGGAAAAGCAGGATATGTTACTGACAAAGGAAG +ACAAAAAGTTGTCCACCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTA +TCTAGCTTTGCAAGATTCAGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATT +AGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCAGTCAAATAATAGA +GCAGTTGATAAACAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAATTGG +AGGAAATGAACAGGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGA +TGGAATAGATAAGGCCCAGGAAGACCATGAAAAATATCACAGCAATTGGAGAGCAATGGC +TAGTGACTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATG +TCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGATTGTAGTCCAGGAATATGGCAACT +AGACTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTTCATGTAGCCAGTGGATA +TATAGAAGCAGAAGTTATTCCAGCAGAAACGGGGCAGGAAACAGCATACTTTCTCTTAAA +ATTAGCAGGAAGATGGCCAGTAAAGACAATACATACAGACAATGGTAGCAATTTCACCAG +TGCTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAACAGGAATTTGGCATTCCCTA +CAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGG +ACAAGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCA +CAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGACAGAATAATAGACAT +AATATCATCAGATATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTT +TCGGGTTTATTACAGGGACAGCAGAGATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTG +GAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAG +AAAAGTAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAG +TAGACAGGATGAGGATTAGAACATGGAAAAGTCTAGTAAAACACCATATGTATAGATCAA +AGAAAGCTAAGGGATGGTTTTATAGACATCACTATGAAAGCCCACATCCAAGAGTAAGCT +CAGAGGTACACATCCCAATAGGGGATGCTAGACTGGTAATAACAACATATTGGGGTCTGC +ATACAGGAGAAAGAGATTGGCATTTGGGTCAGGGAGTCTCCGTAGAATGGAGGACAAGGA +GATATGGAACACAAGTAGACCCTGGCCTAGCAGACCAACTAATCCATCTGTATTACTTTG +ATTGTTTTTCAGAATCTGCCATAAGAAAAGCCATATTAGGACATATAGTTAGTCCTAGTT +GTGAATATCAAGCAGGACATAACAAGGTAGGCTCTCTACAGTACTTGGCACTAGCAGCAT +TAGTACCACCAAAACAGAGAAAGCCACCTCTGCCTAGTGTTACAAAACTGACAGAAGACA +GATGGAACAAGCCCCAGAAAACCAAGGGCCACAGAGGGAGCCGTACAATGAGTGGACACT +AGAGCTCCTAGAGGAGCTTAAGAGTGAAGCAGTTAGACATTTTCCTAGGGTGTGGCTCCA +TGGCTTGGGGCAACATATCTATGAAACTTATGGTGATACTTGGGCAGGAGTGGAGGCCAT +AATAAGAATTTTGCAACAACTGCTTTTTATTCATTTCAGAATTGGGTGTCGACATAGCAG +AATAGGCATTATTCAACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGCCTAGAGC +CCTGGAAGCATCCAGGAAGTCAGCCTAAGACTGCCTGTACCAAGTGCTATTGTAAAAAGT +GTTGCTTTCACTGCTATAAGTGTTTCATAACAAAAGGCTTAGGCATCTCCTATGGCAGGA +AGAAGCGGAGACAACGACGAAGAACTCCTCAGGACCGTCAGACTCATCAAGTTTCTCTAT +CAAAGCAGTAAGTACTAAATGTAATGAGCGCTTTAAAGATAGTAGCAATAGTAGCATTAG +TAGTAGGAGCAATAATAGCAATAGTTGTGTGGTCCATAGTACTCATAGAATATAGGAAAA +TATTAAGACAAAGAAAAATAGATAGGTTAATTGATAGAATAAGAGAAAGAGCAGAAGACA +GTGGCAATGAGAGTGACGGGGATCAGGAGGAATTGTCAGCACTTGTGGAAATGGGGCACC +TTGCTCCTTGGGATGTTAATAATCTATAGTGCTGCAGATAATTTGTGGGTCACAGTCTAT +TATGGGGTACCTGTGTGGAAAGAAGCAACCACTACTTTATTTTGTGCATCAGATAGTAAA +GCATATGATACAGAAGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCC +AACCCACAAGAAGTAGTATTGGAAAATGTAACAGAAAATTTTAACATGTGGGAAAATAAC +ATGGTAGAACAGATGCATGGGGATATAATCAATTTATGGGATCAAAGCCTAAAGCCATGT +GTAAAATTAACCCCACTTTGTGTTACTTTAAATTGCACTGATTATGTAGGGAATAGTGCT +AAAAATGGTACTGATTCGGGGAATAGTACTGTGGCGAATAATGCTACTATTGGGGAAATA +AAAAACTGCTCTTTCAATATCACCACCAGCATAAAAGATAAGGTGCAGAAAGAAAAAGCA +TTGTTTTATAAATATGATTTAGTACAAATAACTGAAGATAAAAATAGTAATACGAGCTAT +AGTAGCTATAGGTTGGTAGGTTGCAACACCTCAGTCATTACACAAGCCTGTCCAAAAATA +TCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTGT +AATGATAAAAGGTTCAATGGAAAAGGACCATGTAAAAATGTCAGCACAGTACAATGTACA +CATGGAATAAGACCAGTAGTATCAACTCAACTACTGTTAAATGGCAGCTTAGCAGAGAAA +GAAATAGTAATTAGATCTGAAAATTTCACGAGCAATACTAAAAACATAATAGTACAGTTA +AATGAATCTGTAGAGATTAAGTGTACAAGACCCAACAACAATACAAGAAAAGGTATACAT +TTAGGACCAGGAAAAGCCTTTTATGCAACAACAGACATAATAGGAGATATAAGACAAGCA +CATTGTAACATTAGTGGAACAAAATGGAATAACACATTAAAACAGATAGCTGAAAAATTA +AAAGAACAATATAATAATAATAAAACAATAGTCTTCAATCAATCCTCAGGAGGGGATCCA +GAAATTGTAATGCACAGTTTTATCTGTGGAGGGGAATTTTTCTACTGTAATACAACGCAA +CTGTTTAGGGGTAATGGTACTGGTAATGGTACTGGAGAGTCAAGTGACATTGTCACACTC +CCATGCAGAATAAAACAAATTGTAAACATGTGGCAGAAAGTAGGAAAAGCTATGTATGCC +CCTCCCATCAAAGGACTAATTAGATGTTCATCAAATATTACAGGGCTAATATTAACAAGA +GATGGTAGTAATAAAAGTAAAAGTGATCCAGAGATCTTCAGACCTGCAGGAGGAGATATG +AGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTCAACCATTAGGA +GTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATA +GGAGCTGTGTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATA +ACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTG +CTGAGAGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAACAG +CTCCAGGCAAGAGTCATGGCTGTGGAAAGATACCTGCAGGATCAACAGCTCCTGGGAATT +TGGGGTTGCTCTGGAAAGCTCATTTGCACCACTTCTGTGCCTTGGAATGCGAGCTGGAGT +AACAAATCTCTGGAGAAAATTTGGGATAACATGACCTGGATGGAGTGGGAAAAAGAGATT +GACAATTACACAAACGAAATATACACCTTAATTGAAATAGCGCAAAACCAACAAGAAAAG +AATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTGACATA +ACAAACTGGCTGTGGTATGTAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTTA +AGAATAGTTTTTACTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTA +TCGTTTCAGACCCGCCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATCGAAGAA +GAAGGTGGAGAGAGAGACAGAGACAGATTGGGACGATCAGTACCTGGATTCTTAGCAATT +ATCTGGGTCGACCTACGGAGCCTGTGCCTTTTCAGCTACCACCGCTTGAGAGACTTACTC +TGGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATAT +TGGTGGAATCTCCTGCAGTATTGGATTCAGGAACTAAAGAGTAGTGCTACTAGCTTGCTC +AACGCCACAGCCCTAGCAGTAGCCGAGGGAACAGATAGGGTTATAGAAGTAATACAAAGA +ATTGGTAGAGCTTTTCTCCATATACCTAGAAGAATAAGACAGGGCTTCGAAAGGGCTTTG +CAATAAAATGGGTGGCAAGTGGTCAAAATGTAGTATGGTTGGATGGCCTGCTGTAAGGGA +AAGAATAAGACACACTGAGCCAGCAGCAGAGGGGGTGGGAGCAGTATCTCGAGACCTGGA +AAGCCATGGAGCGATCACAAGTAGCAATACAGCTGCTAACAATGATGCTTGTGCCTGGCT +AGAAGCACAAGAGGAGGAGGAAGTGGGTTTTCCAGTCAAACCTCAGGTACCTTTAAGACC +AATGACTTACAAGGCAGCTTTGGATCTAAGCCACTTTTTAAAAGAAAAGGGGGGACTGGA +AGGGTTAATTTACTCCCAGAAGAGACAAGAGATCCTTGATCTGTGGATCTACCACACACA +AGGCTACTTCCCTGACTGGCAGAATTACACACCAGGGCCAGGGATCAGATTTCCACTGAC +CTTTGGATGGTGCTTCAAGCTAGTACCAGTTGAGCCAGATGGAGGAGAGAACGACAGATT +GTTACACCCTGTGAGCCAGCATGGGATGGATGACACGGAGAGAGAAGTGTTGATGTGGAA +GTTTGATAGCCGCCTAGCATTTCATCACATGGCCCGAGAGCTGCATCCGGAGTACTACAA +GAACTGCTGACACCGAGCTTTCTACAAGGGACTTTCCGTTGGGGACTTTCCAGGGAGGGT +GTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGAAGCTGCATATAAGCAGCTGCTT +TTTG +>B.GB.2014.0.14592_1_57.3.MF109551 MF109551 +ATGGGTGCGAGAGCGTCGGTATTAAGCTGGGGAGAATTAGATCGATGGGAAAAAATTCGG +TTAAGGCCAGGGGGAAGGAAAAAGTATAAGTTAAAACATATAGTATGGGCAAGCAGGGAA +CTAGAACGATTTGCAGTTAACCCTGGCCTGTTAGAAACATCAGCAGGCTGTAAACAAATA +ATAAGACAGCTACAATCATCCCTTCAAACAGGATCAGAAGAGCTTAAATCATTGTATAAT +ACAGTAGCAGTCCTTTACTGTGTGCATCAAAGGATAGATGTAAAAGACACCAAGGAAGCT +TTAGACAAGATAGAGGAAGAACAAAGTAAAAGTAAGAAACAGGTACAGCCAGCAGCAGCT +GACACAGGAAGCAGCAGCCAAGTCAGCCAAAATTACCCTATAGTGCAGAACCTTCAGGGG +CAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAA +GAAAAGGCTTTTAGCCCAGAAGTAATACCCATGTTTTCAGCATTATCAGAAGGAGCCACC +CCCGGCGATTTAAACACCATGCTAAACACAATAGGGGGACATCAAGCAGCTATGCAAATG +TTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGACTGCATCCAGTGCAGGCA +GGGCCTGTTGCACCAGGCCAGATAAGAGAACCAAGGGGAAGTGATATAGCAGGAACTACT +AGTACCCTTCAGGAACAAATAACATGGATGACAAGTAATCCACCCATCCCAGTAGGAGAA +ATCTATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACC +AGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGATTATGTAGATCGGTTC +TATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAAGTAAAAAATTGGATGACAGAAACC +TTGTTGGTCCAGAATGCGAACCCAGATTGTAAAACTATTTTAAAAGCATTAGGACCAGGA +GCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGGGGACCCAGCCATAAGGCA +AGAGTTTTGGCAGAAGCAATGAGCCAGGTAACAAATCCAGCCACCATAATGATGCAGAGA +GGCAATCCTAGAAACCAAAGAAAGACTATTAAATGCTTCAATTGTGGCAAAGAAGGGCAC +ACAGCCAGAAATTGCAAGGCCCCTAGAAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGA +CACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCC +CACAAGGGGAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCGATCAGCCCCACCAGAG +GAGAGCTTCAGGTTTGGGGAAGAGGCAGCAGCTCCCTCTCAGAGGCAGGAACCGATAGAC +AAGGAACTGTATCCTTTAGCCTCCCTCAGATCACTCTTTGGCAACGACCCCTCGTCACAA +TAAAGGTAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTAT +TAGAAGAAATAGATTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTT +TTATCAAAGTAAGACAGTATGATCAAGTACCCATAGAAATTTGTGGACATAAAGCAATAG +GTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGC +TTGGTTGCACTTTAAATTTCCCCATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGC +CAGGAATGGATGGCCCAAAAGTTAAGCAATGGCCATTGACAGAAGAAAAAATAAAAGCAT +TAGTAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAA +ATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACGGTACTAAATGGAGGAAAT +TAGTAGATTTCAGAGAACTTAACAAGAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAA +TACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGTGATG +CATATTTTTCAGTTCCTTTAGATAAAGAATTCAGAAAGTACACTGCATTTACCATACCTA +GTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTGCCACAAGGATGGA +AAGGATCACCAGCAATATTTCAAAGTAGCATGACAAAAATCTTAGAGCCTTTCAGAAAAC +AAAATCCAGAAATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAG +AAATAGGGCAGCATAGAGCAAAAATAGAGGAACTGAGAGAACATCTGTTGAAGTGGGGGT +TTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGGTATGAAC +TCCATCCTGATAAATGGACAGTACAGCCTATAACACTGCCAGAAAAGGACAGCTGGACTG +TCAATGACATACAGAAGTTAGTAGGAAAACTGAATTGGGCAAGTCAAATTTATGCAGGGA +TTAAAGTAAAGCAATTATGTAAGCTTCTTAGGGGAGCCAGAGCACTAACAGAAGTAGTAC +AACTAACAGAAGAAGCAGAACTAGAATTAGCAGAAAACAGGGAGATTCTAAGAGAACCAG +TACATGGGGTGTATTATGACCCAACAAAAGACTTAGTAGCAGAAATACAGAAGCAGGGAC +AAGGTCAATGGTCATACCAAATTTATCAAGAGCCACATAAAAATCTGAAAACAGGAAAGT +ATGCAAGAACTAGGGGTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAA +AAATAGCTACAGAGAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTGCCCATAC +AAAAGGAAACATGGGAAGCATGGTGGACGGAGTATTGGCAAGCCACCTGGATTCCTGAAT +GGGAGTTTGTCAATACCCCTCCCTTAGTAAAATTATGGTACCAGTTAGAAAAAGAACCCA +TAGCAGGAGCAGAAACTTTCTATGTAGATGGAGCATCTAATAGGGAAACTAGAGTAGGAA +AAGCAGGATATGTTACTAACAAAGGAAGACAAAAGGTTGTCACCCTAAATGACACAACAA +ATCAGAAAACTGAGTTACAGGCAATTCAGCTAGCTTTGCAGGATTCAGGATCAGAAGTAA +ATATAGTGACAGACTCACAATATGCAATGGGAATCATTCAAGCACAACCAGATAGGAGTG +AATCAGAGATAGTCAATCAAATAATAGAGCAGCTAATAATGAAGGAAAGGGTCTATCTGG +CATGGGTACCAGCACATAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTG +CTGGAATCAGGAAAGTGCTATTTTTAGATGGAATAGATAAGGCCCAAGAAGAACATGAGA +AATATCATAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCTA +AAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAG +TAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATCC +TGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAGACAG +GACAGGAAACAGCTTACTTCCTCTTAAAATTAGCAGGAAGATGGCCAGTAACAACAATCC +ATACAGACAATGGCAGCAATTTCACCAGTACTACAGTTAAAGCCGCCTGTTGGTGGGCAG +GGATCAAGCAGGAATTTGGCATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTA +TGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGA +CAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGT +ACAGTGCAGGAGAAAGAATAGTAGACATAATAGCATCAGACTTACAGACTAAAGAACTAC +AGAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAC +TTTGGAAAGGACCAGCAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATA +ATAGTGATATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAAC +AGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGCACAGT +ATAGTAAAACACCACATGTATATATCAAAGAAAGCTAAGAAATGGGTTTATAGACATCAC +TATGAAAGCACTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGA +TTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAG +GGGGTCTCCATAGAATGGAGGGAAAAGAGCTATAGCACACAAGTAGACCCTAACCTAGCA +GATCAACTAATTCACCTGTACTATTTTGATTGTTTTTCAGAATCTGCTATAAGGAAAGCA +ATATTAGGACATAGAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGA +TCTCTACAATACTTGGCACTAACAGCATTAGTAACACCAAAAAGGGGAAAGCCACCTCTG +CCCAGTGTTACTAAATTAACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCAC +AGAGGGAACCATACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAGTGAAGCTG +TTAGACATTTTCCTAGGACGTGGCTTCATGGTTTAGGACAATATATCTATGCAACCTATG +GGGATACTTGGGCAGGAGTAGAAGCCCTAATAAGAATTCTGCAACAGCTGCTGTTTATTC +ATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTACGCAAAGGAGAACAAGAAATG +GAGCCCGTAGATCCTAGACTAGAGCCTTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCT +TGTAACAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGCTTCACAAGAAAA +GGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAGACAACGACGAAGAACTCCTCAAAAC +AGTGAGACTCATCAAGTTTCTCTACCAAAGCAGTAAGTAGTGCATGTGATGNCTTTAATA +ATAGGATCAATAGTAGCATTAGTAATAGCACTAATAATAGCAATAGTTGTGTGGACCATA +GTACTCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGATAGGATAATTGATAGA +ATAATAGAAAGAGCAGAAGACAGTGGCAATGAAAGTGAAGGGGACCAGGAAGAATTGTCA +GCGCTTGTGGAGATGGGGCACCATGCTCCTTGGGATGTTAATGATCTGTAGTGCTGCAGA +CCAATTGTGGGTTACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAACCACCACTTT +ATTCTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACA +TGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAGTATTGGAAAATGTGACAGAAAA +TTTTAACATGTGGAAAAATAACATGGTAAAACAAATGCATGAGGATATAATCAGTTTATG +GGATCAAAGTCTAAAACCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAATTGCAA +TGATTCTACTAACAAAACTAGCAGTAAGGGAGAAATAAAAAACTGCTCTTTTAATGTCAC +CACAAGCATAAGAGATAAGGTAAAGCAAGAATATGCACTGTTTTATAAAGTTGATATAGT +ACCAATNTATAGGTTGATAAATTGTAATACCTCAGTCATTACACAGTCCTGTCCAAAAGT +AACCTTTGAACCAATTCCTATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAGTG +TAATGAAAAGAAGTTCAATGGATCAGGTCCATGTAAAAATGTCAGTACAGTACAATGTAC +ACATGGAATTAGGCCAGTAGTGTCAACTCAACTGCTGCTAAATGGCAGTCTAGCAGAAGA +TGAGGTAGTGATTAGATCTAGCAATTTCTCGGACAATACTAAAAACATAATAGTACAGCT +AAATGAAACTGTACAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGTATACC +TATAGGACCAGGGAGAGCATTTTATGCAACAGGAGAAATAGTAGGAGATATAAGAAAAGC +ACATTGCATCATTAATGGAAGTGATTGGAGAAAAACTTTAGAAAAGGTAGTTGAAAAATT +AAGAGACCAATTTAACAAAACAATAACCTTTAGTCAACCATCAGGAGGGGATCCAGAAAT +TATAATGCACACTTTTAATTGTGGAGGGGAATTTTTCTACTGTGATACAACAAAACTGTT +TAATTCACACTCCCATGTAGAATAAAGCAAATTATAAACATGTGGCAAGAAGTGGGAAAA +GCTATGTATGCCCCTCCTATCCCAGGAATAATTAACTGTTTATCAAATATTACGGGGCTA +ATATTAACAAGAGATGGAGGNGAGATTTTCAGACCTGGAGGAGGAGATATGAGGGACAAT +TGGAGAAGTGAATTATATAAATATAAAGTAGTAGAAATTAAACCATTAGGAGTAGCACCC +ACCAAGGCAAAGAGAAGAGTGGTGCGGAGAGAAAAAAGAGCAGTGGGAATAGGAGCGATG +TTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAGTGACGCTGACG +GTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGAACAATCTGCTGAGGGCT +ATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATTAAGCAGCTCCAGGCA +AGAATCCTGGCTGTGGAAAGATACCTACAGGATCAACAGCTCCTAGGGCTTTGGGGTTGC +TCTGGAAAACTCATTTGCCCCACTACTGTGCCTTGGAATACTAGTTGGAGCAATAAATCT +CTGAATAAGATTTGGAATAACATGACCTGGATGCAGTGGGAAAGAGAAATTGACAATTAT +ACAGGCCTAATATACACCTTAATTGAACAATCGCAGAACCAGCAAGAAATAAATGAACAA +GAATTATTGGAATTGGATAAGTGGGCAAATTTGTGGAATTGGTTTGACATAACAAACTGG +CTGTGGTATATAAAGATATTCATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTT +TTTGCTGTGCTTTCTATAGTAAATAGAGTTAGGCAGGGATATTCACCATTGTCATTGCAG +ACCCTCCTCCCAACCCCGAGGGGACCCGACAGGCCAGAAGGAATCGAAGGAGAAGGTGGA +GAGAGAGGCAGAGATTCGTCCGTGAGATTAGTGAACGGATTCTTAGCGATTTTCTGGGAC +GACCTGCGGAACCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTA +GCGAGGATTCTGGGACTTCTGGGACGCAGGGGGTGGGAAGCTCTCAAATATTGGTGGAAT +CTCCTGCAGTATTGGAGTCAGGAATTAAAGAATAGTGCTGTTAGCTTGCTTAACGCCACA +GCTATAGCAGTAGCTGAGGGGACAGATAGGATTATAGAAGTAGTGCTAAGAGTTTATAGA +GCTATTATCCACATACCTACAAGAATAAGACAGGGCTTGGAAAGAGTTTTGCTATAAAAT +GGGTGGCAAGTGGTCAAAACTGGCTGGGTGGGCTACTGTAAGGGAAAGAATGAGAAGACA +ACAACAGAGAGGGTGGAAGCAGTATCTCGAGACCTGGAAAAACAAGGAGCAAGCGCTAGT +AGCAATACAGCAACTAATAATGCTGCTTGTGCCTGGCCAGAAGCACAAGAGGATGAAGTG +GGTTTTCCAGTCAGACCTCAGGTTCCTTTAAGACCAATGACTTACAAGGCAGCTCTAGAT +CTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTTACTCACAAAGAAGA +CAAGAGATCCTTGATCTGTGGATCTACCACACACAAGGCTACCTCCCTGATTGGCAGAAC +TACACACCAGGGCCAGGGATCAGATATCCACTGACCTTTGGATGGTGCTTCAAGCTAGTA +CCAATGGATCCAGAGCAAATAGAAGAGGCCAGCAAAGGAGAGAACAACTGCTTGCTACAG +GAGATGGATGACACAGAGAAAGAAGTGTTAGTGTGGAAGTTTGACAGCCGCCTAGCGTTC +CATCACATGGCCCGAGAGCTGCATCCGGAGTTTTACAACTGCTGA +>A1.RW.1993.0.93RW_024.AY713406 AY713406 +GCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGG +CCAGGGGGAAAGAAAAAATATAGAATGAAACATCTAGTGTGGGCAAGCAGGGAGCTGGAA +AGATTTGCACTTAACCCTAGCCTTTTAGAATCAACAGAAGGATGTCAACAAATAATAGAA +CAGTTACAACCAGCTCTTAAGACAGGAACAGAAGAAATTAAATCATTATATAATACAGTA +GCAACCCTCTACTGCGTACATCGAAGGATAGATGTAAAAGACACCAAGGAAGCTCTAGAT +AAAGTAGAGGAGATACAAAATAAGAGCAAGCAAAAGACTCAACAGGCAGCAGCTGACACA +GGAAACAGCAGCAGGAGCGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAA +ATGGTACACCAGCCCTTATCACCTAGGACTTTGAATGCATGGGTCAAAGTAATAGAAGAA +AAGGCTTTCAGCCCAGAAGTAATACCCATGTTCTCAGCACTATCAGAAGGAGCCACCCCA +CAAGATTTAAATATGATGCTGAATGTAGTGGGGGGACACCAGGCAGCTATGCAAATGTTA +AAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGTTACATCCAGTACATGCAGGG +CCTATTCCACCAGGTCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGT +ACCCCTCAAGAACAAATAGGATGGATGACAGGCAATCCACCTATCCCAGTGGGAGACATC +TATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTTAGC +ATTTTGGATATAAAACAAGGGCCAAAAGAACCCTTCAGGGATTATGTAGATAGATTTTTT +AAAACACTCAGAGCTGAGCAAGCTACACAGGAGGTAAAAGGTTGGATGACAGAAACATTA +CTGGTCCAAAATGCAAATCCAGATTGTAAGTCCATTTTAAGAGCATTAGGACCAGGGGCT +TCATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGG +GTTTTAGCTGAGGCAATGAGTCAAGCACAACAGACAAACATAATGATGCAGAGAGGCAAT +TTTAGGGGCCAGAAAAAGATTAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCTAGA +AATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGGAAGGAGGGACACCAAATG +AAAGACTGCTCTGAAAGACAAGCTAATTTTTTAGGGAGAATTTGGCCTTCCAGCAAGGGG +AGGCCAGGAAATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGCTCCTT +GGGATGGGGGAAGAGATAGCCCCCCCTCCGAAGCAGGAGCAGAAAGACAGGGAACAGGGC +CCACCTTTAGTTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAATAAAAATAG +GGGGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGACACAGTTTTAGAAGACA +TAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGGGGTTTCATCAAAG +TAAGACAGTATGATCAGATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTAT +TAGTAGGACCTACACCTGTCAACATAATTGGAAGGAATATGTTGACCCAGATTGGTTGTA +CTTTAAATTTCCCAATTAGTCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGG +ATGGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAA +TTTGTACAGAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACA +ATACTCCAATATTTGCTATAAAGAAAAAGGACAGCACTAAATGGAGAAAATTAGTAGATT +TCAGAGAGCTCAATAAAAGAACACAAGACTTTTGGGAAGTTCAATTGGGGATACCGCACC +CAGCGGGCCTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGGGACGCATATTTTT +CAGTTCCTTTAGATGAAGACTTTAGAAAATATACTGCATTTACCATACCTAGTACAAACA +ATGAGACACCAGGAATCAGGTATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCAC +CGGCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGATCAAGAAATCCAG +ACATAATTATCTATCAATACATGGATGACTTATATGTAGGATCTGATTTAGAAATAGGGC +AGCATAGAGCAAAAATAGAAGAGTTAAGAGCTCATCTATTGAGCTGGGGATTTACTACAC +CAGACAAAAAGCATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAGCTCCATCCTG +ACAAGTGGACAGTCCAGCCTATAGTGCTGCCAGAGAAGGAAAGCTGGACTGTCAATGATA +TACAGAAATTAGTAGGGAAACTAAATTGGGCAAGTCAAATTTATGCAGGAATTAAAGTAA +AGCAATTGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGAGATAGTAACATTGACTG +AGGAAGCAGAATTAGAATTGGCAGAGAACAGGGAGATTCTAAAAGAACCTGTGCATGGAG +TATATTATGATCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGCAAGACCAAT +GGACATACCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCAAGAA +AAAGGTCTGCACACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAGGTGGTCA +TGGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAGA +CATGGGAAACATGGTGGATGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTG +TCAATACCCCTCCTCTAGTAAAACTATGGTACCAGTTAGAGAAGGACCCCATAGAAGGAG +CAGAGACTTACTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGT +ATGTCACTGACAGAGGAAGACAAAAGGTTATTTCCCTAGCTGAGACAACAAATCAAAAGA +CTGAACTACATGCAATCCATCTAGCCTTGCAGGATTCAGGATCAGAAGTGAACATAGTAA +CAGACTCACAGTATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGGGT +TAGTCAATCAGATAATAGAGAAATTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTAC +CAGCACACAAGGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCCGGAATCA +GGAAGGTGCTGTTTTTAGATGGGATAGATAAAGCTCAAGAAGAACATGAAAGATATCACA +GTAATTGGAGAACAATGGCTAGTGATTTTAATCTGCCACCTGTAGTAGCAAAAGAAATAG +TAGCCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGCA +GTCCAGGGATATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATTCTAGTAGCAG +TCCATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGA +CAGCCTACTTTCTACTAAAATTAGCAGGCAGATGGCCAGTAAAAGTAGTACACACAGACA +ATGGTAGCAATTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCAAATATCCAAC +AGGAATTTGGGATCCCCTACAATCCCCAAAGTCAAGGGGTAGTAGAATCTATGAATAAGG +AATTAAAGAAAATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTAC +AAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAG +GGGAAAGAATAATAGACATAATAGCAACAGATATACAAACTAAAGAATTACAAAAACAAA +TTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAATTTGGAAAG +GACCAGCAAAACTACTTTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGATA +TAAAGGTAGTACCAAGAAGAAAAGTAAAGATCATCAGGGATTATGGAAAACAGATGGCAG +GTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAA +CATCATATGTATGTCTCAAAGAAAACAAAGAATTGGTTTTATAGACATCACTATGAAAGC +AGACATCCAAGAGTAAGCTCAGAAGTACACATCCCACTAGGGGATGCTAGACTAATAGTA +AGAACATATTGGGGTCTGCATACAGGAGAAAAAGACTGGCACTTGGGGCATGGGGTCTCC +ATAGAATGGAGGCTAAAAAGATATAGCACACAAATAGATCCTGACCTGGCAGACCAACTA +ATTCATCTGCATTATTTTGACTGTTTTTCAGAATCTGCCATAAGGAGAGCCATATTAGGA +CAAGTAGTTAGCCCTAGTTGTGAATATCACACAGGACATAACCAGGTAGGATCCCTACAA +TATTTAGCACTGAAAGCATTAGTAACACCAACAAAGACAAGGCCACCTTTGCCTAGTGTT +AGGAAATTAGCAGAGGATAGATGGAACAAGCCCCGGAAGACCAAGGACCACAGAGGGAGC +CATACAATGAATGGATGTTAGAGCTGTTAGAAGATCTTAAGCATGAAGCCGTTAGACATT +TTCCTAGACCATGGCTTCATGGATTAGGACAACATATCTATGAAACCTATGGGGATACTC +AGGAAGGAGTTGAGGCTATAGTAAGAATTCTGCAACAACTACTGTTTGTTCATTTCAGAA +TCGGGTGCCAACATAGCAGAATAGGCATTATTCCAGGGAGAAGAGGCAGGAATGGATCCA +GTAGATCCTAACCTAGAGCCCTGGAACCATCCGGGAAGTCAGCCTACAACTGCTTGTAAC +AAGTGTTACTGTAAAAAGTGTTGCTATCATTGTCCAAGTTGCTTTTTGAACAAAGGCTTA +GGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAGGAACTCCTCAAAGCAGTAAG +GATCATCAAAATCCTATACAAAAGCAGTAAGTAATTAGCATATGTAATGCAGTCTTTGGA +AATCTGTACAATAGTAGGATTCATAGTAGCGCTAATCCTAGCAATAGTTGTGTGGACTAT +AGTAGGAATAGAATATAAGAAAGTGCTAAGACAAAGAAAAATAGACAGGATAATTGAGAG +AATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGATGGGGATACAGAGGAATTATC +AGCACTTGTTAGAATGGGGAACTATGATCTTGGGGATGATAATATTCTGTAGTGCTGTAG +AAAACTTGTGGGTTACTGTCTACTATGGGGTACCGGTGTGGAAAGATGCAGAGACCACCC +TATTTTGTGCCTCAGATGCTAAAGCATATGAGACAGAAGTGCATAATGTCTGGGCTACAC +ATGCCTGTGTGCCCACAGACCCAAACCCACAAGAAATACCTTTGGAAAATGTGACAGAAA +AGTTTAACATGTGGAAAAATTATATGGTAGAGCAGATGCATACAGATATAATCAGCCTAT +GGGATGAAAGCCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGCGTTACTTTAAATTGTA +GCGATGCCATTGGCAACTTTACAAATATCAAGGAAGAAATAACAAACTGCTCTTTCAATG +TGACCACAGAACTAAGGGATAAGACAAAGAAAGTACATTCACTTTTTTATAGACTTGATA +TAGTACCACTTAATGAATATAGTAGTAGCAATAAAAGTAGTAACAATAATAATAGTAGCC +AGGAATATGTATTAATAAATTGTAATACCTCAGCCATTACACAAGCCTGTCCAAAGGTAA +CCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATCCTAAAGTGTA +AGGACACAGATTACAATGGAACAGGGCCATGCAGGAATGTCAGCACAGTACAATGCACAC +ATGGAATCAAGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGCCTAGCAGAAAGAA +ATGTAACAATTAGATCTGAAAATATCACAAACAATGCCAAAACCATACTAGTACAACTTG +TCAAGCCTGTGAGAATTAATTGTACCAGACCTTATAACAATACATTCAGAAGGGTACGTA +TAGGACCAGGACAATCATTCCATGCATCAGATAACATAGTAGGGGATATAAGAAAAGCAC +ATTGTAATGTTAGTAGATCAGAATGGAATGAAACTTTACAACAGGTAGTTACTCAATTAA +GAGGGTACTTTGGGAACAAGACAATAGTCTTTACTAAGCCCTCAGGAGGGGATCTAGAAA +TCATAACACATAGTTTTAATTGTAGAGGAGAATTTTTCTATTGTAATACATCAAGCCTGT +TTAATAGCACTTGGAATAACACTGCCAGCATGCAGAAGTCAAATAGCACGGGGTCAAATG +ACACTATAACTCTCCAATGCAGAATAAAGCAAATTATAAGAATGTGGCAAAGAACAGGAC +AGGCAATGTATGCCCCTCCCATCAAAGGAGATATAAGGTGTGAATCAAACATTACAGGAC +TAATATTAACAAGAGATGGTGGGAATGATAGCAGTCCAGATGAAATCTTCAGACCTGGAG +GAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAGTACAAATTG +AACCTCTAGGAGTAGCACCCACCAAGGCAAGAAGAAGAGTGGTGCAGAGAGAGAAAAGAG +CAATTGGAATAGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCG +CGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGCATAGTGCAACAGC +AAAGCAATTTGCTGAGGGCTATAGAGGCTCAACAACATCTGTTGAAACTCACGGTCTGGG +GCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGC +TCCTAGGAATTTGGGGTTGCTCTGGGAAACTCATCTGCACCACTAATGTGCCCTGGAATA +CTAGTTGGAGTAAAAATAAATCTCTGAGTGAAATATGGGATAACATGACCTGGCTGCAAT +GGGATAAAGAAATTAGCAATTACACAAACCTAATATATAACCTAATTGAAGAATCGCAGA +ACCAGCAGGAAAAGAATGAACAAGACTTATTAGCATTGGATAAGTGGGCAAATCTTTGGA +CTTGGTTTGACATATCAAATTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAG +GCTTAATAGGATTAAGAATAGTTTTTGCTGTGCTTACTGTAATAAATAGAGTTAGGCAGG +GATACTCACCTTTGTCATTTCAGATCCATACCCCAAACCCAGGGGATCCCGACAGGCCCG +GAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAAACAGATCGATTCGATTAGTAAGCG +GATTCTTAGCGCTTGCCTGGGACGATCTGCGGAGCCTGTGCCTTTTCTGCTACCACCGCT +TGAGGGACTTCACCTTGATTGCAGCGAGGACTGTGGAACTTCTGGGACACAGCAGTCTCA +AGGGGTTGAGACTGGGGTGGGAAGGCCTCAAGTATCTTGGGAATCTCCTGTTGTATTGGG +GTCAGGAACTGAAAAATAGTGCTATTAATTTGTTTGATACCATAGCAATAGCAGTAGCTG +GCTGGACAGATAGGGTTATAGAAGTAGGACAAAGAGTTGGTAGAGCTTTGCTCCACGTAC +CTAGAAGGATCAGACAGGGCTTTGAAAGGGCTTTGCTATAACATGGGTGGCAAGTGGTCA +AAAAGTAAAATGGGCTGGCCTGAGATTAGGGAAAGAATGAGACGCGCTCCTGCTCCTTCA +GCAGCAACAGGAGTAGGAGCAGTATCTCAAGATTTAGCTAGACATGGAGCAGTCACAAGC +AGCAATACCAATCACCCTAGTTGCGTCTGGCTGGAAGCGCAAGAAGAAGAGGAGGAGGTA +GGCTTTCCAGTCAGGCCACAAGTGCCTCTAAGACCAATGACTTACAAGGCAGCTGTGGAT +CTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTACTCCAGGAGAAGA +AAAGACATCCTTGATCTGTGGGTCTACCACACACAAGGATTCTTCCCTGATTGGCAAGAA +TACACACCAGGGCCAGGGACCAGATACCCACTAACGTTTGGATGGTGCTTCAAGCTAGTA +CCAGTTGATCCAGATGAAGTAGAGAAGGAGACTGAAGGAGAGAACAACAGCCTATTACAC +CCTATATGCCAACATGGAATGGATGATGAGGAGAAAGAAGTGTTAAAGTGGGTGTTTGAC +AGCCGCCTGGCACTGAAACACAGAGCCCAAGAGCTGCATCCGGAGTTCTACAAAAACTGA +TGACACAGAAGATGCTGACAGGGACTTTCTGCTGGGGACTTTCCAGGGGAGGTGTGGTTT +GGGCGGAGTTGGGGAGTGGCTAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCT +GTACTGGGTCTCTCTTGGTAGACCAGATTGAGCCTGG +>A1.TZ.2005.0.CO0439V5.KX907347 KX907347 +GATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAGAAAATTCG +GTTAAGGCCAGGGGGAAAGAAAAAATATAGAATGAAACACCTAGTATGGGCAAGCAGGGA +GCTGGAAAGATTTGCACTTAATCCTAGCCTTTTAGAAACAACAGAAGGATGTCAACAAAT +CATGGAACAGTTACAACCAGCTCTCAAAACAGGAACAGAAGAACTTAGATCATTATTTAA +TACAGTAGCAACCCTCTATTGTGTACATCAACGGATAGGGGTAAAAGACACCAAGGAAGC +TCTAGATAAAGTAGAGGAAATGCAAAATAAGAGCAGGCAAAAGGCACAACAGGCAGCGGC +TGATACAGGAAACAGCAGCAAAGTCAGCCAAAATTATCCTGTAGTGCAGAATGCACAAGG +GCAAATGACACACCAGTCCTTGTCACCTAGGACTTTGAATGCATGGGTAAAAGTAATAGA +AGAAAAGGCTTTTAGCCCAGAAGTGATACCCATGTTTTCAGCCTTATCAGAAGGAGCCAC +CCCAGGTGATTTAAATATGATGCTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAAT +GTTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGTTACATCCAGTACATGC +AGGGCCTATTCCACCAGGCCAATTGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTAC +TAGTACCCCTCAAGAACAAATAGGGTGGATGACAGGCAACCCACCTATCCCAGTGGGAGA +CATCTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGT +TAGCATTTTGGATATAAGACAAGGGCCAAAAGAACCCTTCAGAGATTATGTAGACAGGTT +CTTTAAAGTTCTCAGAGCTGAGCAAGCTACACAGGAGGTAAAAAATTGGATGACAGAAAC +ATTGTTGGTCCAAAATGCAAATCCAGACTGTAAGTCCATTTTAAGAGCATTAGGACCAGG +GGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGTCATAAAGC +AAGGGTTTTGGCTGAGGCAATGAGTCAAGTACAAAATACAAACATAATGATGCAAAGGGG +CAATTTTAGGGGCCAGAAAAGGATTAAGTGTTTTAACTGTGGGAAAGAAGGACACCTAGC +CAGAAATTGCAAGGCCCCTAGGAAAAAGGGCTGTTGGAAGTGTGGAAAGGAGGGACACCA +AATGAAAGACTGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAA +GGGAAGGCCAGGAAATTTTCCTCAGAGCAGACCAGAGCCATCAGCCCCACCAGCAGAGAG +CTTCGGGATGGGGGAAGAGATAACCTCCCCTCCGAAGCAGGAACAGAAAGACAGCCCACC +TTTAACTTCCCTCAGATCACTCTTTGGCAACGACCTCTTGTCACAGTAAGGATAGGGGGA +CAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAAT +TTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAAA +CAATATGATCAGATACTTATGGAAATTTGTGGAAAAAAGGCTATAGGGACAGTATTAGTA +GGACCTACACCCGTCAACATAATTGGAAGAAACATGTTGACCCAGATTGGTTGCACTTTA +AATTTCCCAATTAGTCCTATTGAGACTGTACCAGTAAAGTTAAAGCCAGGAATGGATGGC +CCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAGGCATTGACAGAAATTTGT +ACAGAAATGGAAAAGGAAGGAAAAATTTCAAAGATTGGGCCTGAAAATCCATACAATACT +CCAATATTTGCAATAAAGAAAAAAGACAGCACAAAATGGAGAAAGTTAGTAGATTTCAGG +GAGCTCAATAAAAGAACACAAGACTTTTGGGAAGTTCAATTAGGAATACCGCATCCAGCG +GGCCTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTT +CCTTTAGATGAAGAGTTTAGGAAGTATACTGCTTTCACCATACCTAGTACAAACAATGAG +ACACCAGGAATCAGGTATCAATACAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCA +ATATTCCAGAGTAGCATGACAAAAATTTTAGAACCCTTTAGAGCAAAAAATCCAGAAATA +ATTATCTATCAATACATGGATGACTTGTATGTGGGATCTGATTTGGAAATAGGACAGCAC +AGGACAAAAATAGAAGAATTGAGAGCTCATCTATTGAGCTGGGGGTTTACTACACCAGAC +AAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGATATGAGCTCCATCCTGACAAG +TGGACAGTCCAGCCTATAGTGCTGCCAGAAAAAGAAAGCTGGACTGTCAATGATATACAG +AAACTAGTGGGGAAACTAAATTGGGCAAGTCAAATTTATGCAGGGATTAAAGTAAAGCAA +TTGTGTAGACTCCTCAGGGGAGCCAAGGCACTAACAGAGACAGTAACATTGACTGAAGAA +GCAGAATTAGAATTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATAC +TATGACCCATCAAAAGACTTAGTAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACA +TACCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCAAGAAAAAGG +TCTGCTCACACTAATGATGTAAAACAGTTAGCAGAAGTGGTACAAAAGGTGGTCATGGAG +AGCATAGTAATATGGGGAAAGAGTCCTAAATTTAAATTACCCATACAAAAGGAGACATGG +GAAACATGGTGGATGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTTAAT +ACCCCTCCTCTAGTAAAATTATGGTACCAATTAGAGAAAGACCCCATAATAGGAGCAGAG +ACTTTCTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTC +ACTGACAGAGGAAGACAAAAGATTGTTTCCCTAATTGAGACAACAAATCAAAAGACTGAA +CTACATGCAATCTATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAACATAGTAACAGAC +TCACAGTATGCCTTAGGAATCATTCAGGCACAGCCAGACAGGAGTGAATCAGAGCTAGTC +AGTCAAATAATAGAGAAGTTAATAGAAAAGGACAAAGTCTATCTGTCATGGGTGCCAGCA +CACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCCGGAATCAGGAAG +GTGCTGTTTTTAGATGGGATAGATAAAGCTCAAGAAGACCATGAAAGATATCACAGCAAT +TGGAGAGCAATGGCTAGTGATTTTAATCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCT +AGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGCAGTCCA +GGGATATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATTCTAGTAGCAGTTCAT +GTAGCCAGTGGCTATATAGAGGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACCGCA +TACTTTATACTAAAATTAGCAGCAAGATGGCCAGTAAAAATAATACACACAGACAATGGC +AGCAATTTCACTAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCAGATATCCAACAGGAA +TTTGGGATTCCCTACAACCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGGAATTA +AAGAAAATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTACAAATG +GCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTATAGTGCAGGGGAA +AGAATGATAGACATGATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACA +AAACTTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCACTTTGGAAAGGACCA +GCAAAACTACTTTGGAAAGGTGAAGGGGCAGTAGTGATACAGGATAATAGTGATATAAAG +GTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGAT +GATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAATAGTTTAGTAAAACATCA +TATGTATATCTCAAAGAAAGCTAGGAATTGGTTTTATAGACATCACTTTGAAAGCAGGCA +TCCAAGAGTAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAGATTAGTAGTAAAGAC +CTATTGGGGTCTACATCCAGGAGAAAAGGACTGGCAATTGGGTAATGGGGTATCCATAGA +ATGGAGGCTAAAAAGATATAACACACAAATAGATCCTGAGCTGGCAGACCAACTAATTCA +TCTGCATTATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAAGCCATATTAGGACAAGT +AGTTAGCCCTATATGTGAATATCAAGCAGGACATAGCAAGGTAGGATCTCTACAATATTT +AGCACTGAAAGCATTAGTAACCCCAACAAAGACAAAGCCACCTTTGCCTAGTGTTAGGAT +ACTAGCGGAGGATAGATGGAACAAGCCCCGCAAGACCAGGGGCCCCAGAGGGAACCCTAC +AATGAATGGATGTTAGATCTGTTAGAAGAGCTTAAGCATGAAGCCGTTAGACATTTTCCT +AGACCATGGCTTCATGGATTAGGACAACATATCTATAACACCTATGGGGATACTTGGGAA +GGAGTTGAAGCTATAGTGAGAATGCTGCAACAATTACTGTTTGTTCATTTCAGAATTGGG +TGCCAACATAGCAGAATAGGCATTATTCGGGGGAGAAGAGGCAGGAATGGACCCGGTAGA +TCCTAACCTAGAGCCTTGGAACCACCCAGGAAGTCAGCCTGCAACTCCTTGTAGCTCGTG +TTACTGTAAAGTGTGTTGCTATCATTGCCCAGTTTGCTTTTTGAACAAAGGCTTAGGCAT +CTCCTATGGCAGGAAGAAGCGGAAGCAGCGACGACGAACTCCTCAAAGCGATAAGGATCA +TCAAAATCCTATACAAAAGCAGTAAGTATATGTAATGTGGGACTCTTTGTCTATCTGTGC +AGTAGTAGGACTGATAGTAGCGCTAATCCTAGCAATAGTTGTGTGGACCATAGTAGGTAT +AGAATATAAGAAATTGCTAAAACAAAGAAAAATAGACAAGTTAATTGAAAGAATAAGAGA +AAGAGCAGAAGACAGTGGCAATGAGAGTGATGGGGATACAGAGGAATTGTCAACACTTAT +TGAGATGGGGAACCTTGATTTTGGGGTTGATAATAATCTGTAGTACTGCAGACAAGTTGT +GGGTTACTGTATACTATGGGGTACCTGTGTGGAAAGATGCAGAGACCACCTTATTCTGTG +CATCAGACGCTAAAGCATATGACAAAGAAAAGCATAATGTCTGGGCTACGCATGCCTGTG +TACCCACAGACCCTAACCCACAAGAAATACATTTGGAAAATGTGACAGAAGAGTTTAACA +TGTGGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATCAGTCTATGGGATCAAA +GCCTTAAGCCATGTGTAAAGCTAACCCCTCTCTGCGTTACTCTAAATTGTAGCCACAACA +TTACTAGGCTCAACACCAGTAGTCCCAACATCACAGGAAACGACACAAACAGTAGTCCCA +ACATCACAGAAAACGACACAGAAAACGAAAGGAAAAACTGCTCTTTCAATATAACCACAG +AATTAAGGGATAAGAGCAAACAAGTATATTCACTTTTTTATAGACTTGATATAGTACCAA +TTGATGGTAGTGACAATAGCAGTGACAATAGCAATAATTATAGATTAATAAATTGTAATA +CCTCAGCCATTACACAGGCTTGCCCAAAAGTGTCCTTTGAGCCAATTCCCATACATTATT +GTGCCCCAGCTGGTTTTGCGATTCTAAAATGTAAGGATGGAAATTTCAGTGGAAAAGGGC +CATGCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGTAGTATCAACTC +AACTGCTGTTAAATGGCAGTCTAGCAGAAGAAAAGGTAAAAATTAGATCTGAAAATATCA +GTGACAATACCAAAAACATAATAGTACAACTTGTCCAACCTGTGAAGATTAACTGTACCA +GACCTGACAACAACACAAGAAAGAGTATACATATAGGACCAGGACAAGCATTCTTTGCAA +CAGGTGCCATAATAGGGAAGATAAGACAAGCACATTGTAATGTCAGTAAAACAGAATGGA +ATAAAGCTTTAAAACAGGTAGTTGAACAATTAAGAAGAGACTTTGGAAACAAAACAATAA +TATTCAAAAACTCCTCAGGAGGAGATCTAGAAATCACAACACATAGTTTCAATTGTGGAG +GAGAATTTTTCTATTGTAATACATCAGGCCTGTTTAATAGCACTTGGCTGTCTAATAGTA +CTAACAGCACGGATAACACGGGGACAAATGACACTATAACTCTCCAATGCAGAATAAAGC +AAATTATAAATATGTGGCAAAGAGTAGGACAAGCAATGTATGCCCCTCCCATCCCAGGAG +TAATAAGGTGTGAATCAAACATTACAGGACTAATGTTAACAAGAGATGGTGGGAATAATG +CTACCAATGAAACCTTTAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAAT +TATATAAGTATAAAGTAGTAAAAATTGAACCACTAGGAGTAGCACCCACCAAGGCAAAGA +GAAGAGTGGTGGAGAGAGAAAAAAGAGCAGTTGGAATAGGAGCTGTCTTCCTTGGGTTCT +TAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGAC +AATTATTGTCTGGCATAGTGCAACAGCAAGGCAACTTGCTGAGGGCTATAGAGGCTCAAC +AACATCTGTTGAAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCGAGAGTCCTGGCTG +TGGAAAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCA +TCTGCACCACTACTGTGCCCTGGAACTCTAGCTGGAGCAATAAATCTTACGATGATATAT +GGGAGAACATGACCTGGCAGCAATGGGAGCGGGAAATTAGCAATTACACAGATATAATAT +ACAGATTGATTGAAGACTCGCAGAACCAGCAGGAAATGAATGAAAAAGACTTATTGGCAT +TAGACAAGTGGGCAAGTCTGTGGAATTGGTTTGACATAACAAAGTGGCTGTGGTATATAA +AAATATTTATAATGATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTGCTGTGCTTG +CTATAATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCGTTCCAGACCCATACCCCAA +GCCCAAGGGATCTCGACAGGCCCGGAAGAATCGAAGAAGAAGATGGAGAGCAAGACAGAA +CCAGATCGATTCGCTTAGTGAGCGGATTCTTAGCGCTTGCCTGGGACGATCTGCGGAGCC +TGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTCATCTTAATTGCCACGAGGACTGTGG +AACTTCTGGGACACAGCAGTCTCAAGGGGCTGAGACTGGGGTGGGAAGGCCTCAAGTATC +TGTGGAATCTCCTGTTATATTGGGGACGGGAACTAAAGAATAGTGCTATTAATTTGGTTG +ATACCATAGCAATAGTAGTAGCTGGCTGGACAGATAGGGTTGTAGAAATAGGACAAAGAT +TTGGTAGGGCTATCCTCTACATACCTAGAAGAATAAGACAGGGCTTAGAAGGGGCTTTGC +TATAACATGGGTGGCAAGTGGTCAAAAAGCAGCAGAGTGGGATGGGCTGAGATTAGAGAA +AGAATGAGACGTACTCCTGCAGCAGCACCAGGAGTAGGAGCAGTATCTCAAGATTTAGAT +AAGCATGGAGCAATCACAAGTACTAATGTAAATCACCCTAGTTGTGCCTGGCTGGAAGCG +CAGGAAGAGGATGAGGAGGTAGGCTTTCCGGTCAGGCCACAAGTACCTCTGAGACCCATG +ACTTACAAGGCAGCTGTTGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGG +TTAATTTACTCCAAGAAAAGACAAGACATCCTTGATCTGTGGGTCTACCACACACAAGGC +TTCTTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGGAAAGATTCCCACTAACATTT +GGATGGTGCTTCAAACTAGTACCAGTTGATCCAGATGAAGTAGAGAAGGCCAATGAGGGG +GAGAACAACTGTCTATTACACCCGATATGCCAACATGGAATGGATGATGATGACAGAGAA +GTGTTAAAGTGGAAGTTTGACAGTCGCCTGGCACTAAAACACAGAGCCCGAGAGCTGCAT +CCGGACTTCTACAAAGACTGCTGACACAGAGATTGCTGACAGGGACTTTCCGCTGGGGAC +TTTCCAGGGGAGGTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAA +>A1.TZ.2012.0.30924v01_01.MN791964 MN791964 +ATGGGTGCGAGAGCGTCAATATTAAAGGGGGGAAAATTAGATGCTTTGGAGAAAATTCGA +TTAAGGCCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAATATGGGCAAGCAGGGAG +CTGGAAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAGCAAATA +ATAGGACAGTTACAATCAGCTCTCAGGACAGGGACAGAAGAATTGAGATCATTATATAAT +ACAGTAGTAACCCTTTACTGTGTACATCAAGGGATAGATGTAAAAGACACTAAGGAAGCT +CTAGATAAAATAGAAGAAATACAAACTAAGAGCAAGCAACAGACACAGCAGGCAGCAGCC +GCAGGAAGCAGCAGCCAGGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAA +ATGATGCACCAGAACTTGTCACCTAGGACTTTAAATGCATGGGTGAAAGTAATAGAAGAA +AAGGGTTTTAGCCCAGAAGTGATACCCATGTTCACAGCATTATCAGAAGGAGCTACCCCA +CAAGATTTAAATGTGATGCTAAACATAGTGGGGGGACACCAGGCAGCTATGCAGATGTTA +AAAGACACCATCAATGAAGAAGCTGCAGAATGGGACAGGTTACATCCAGTACAGGCAGGG +CCTATTCAACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGC +ACCCCTCAAGAACAAATACAATGGATGACGAACAACCCACCTATCCCAGTGGGAAACATT +TATAAAAGATGGATAATCTTGGGATTAAATAAAATAGTAAAAATGTATAGCCCTGTTAGC +ATTCTGGATATAAAACAAGGGCCAAAAGAACCCTTCAGGGACTATGTAGATAGGTTCTTT +AAAACTCTCAGAGCTGAGCAGGCTACACAGGAGGTAAAAGGATGGATGACAGAAACATTA +CTGGTCCAAAATGCAAATCCAGATTGTAAGTCCATTTTAAGAGCATTAGGAGCAGGGGCT +ACATTAGAAGAGATGATGACAGCATGTCAGGGAGTGGGAGGACCCGGCCACAAAGCAAGG +GTTCTGGCTGAGGCAATGAGTCAAGTACAACAGCCAAATATAATGTGGCAGAGAGGCAAT +TTTAAGGGACAGAAAAAGATTAAGTGTTTTAACTGTGGCAAAGAGGGACATCTAGCCAGA +AATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAGGGACACCGAATG +AAAGATTGCACAGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCGGCAAGGGG +AGGCCAGGGAATTTTCCTCAGAACAGACTGGAGCCAACAGCCCCACCAGCAGAGCTCTTT +GGGATGGGGGAAGAGATGACCTCCCCTCAGAAGCAGGAGCAGAGAGACAAGGAATCGACC +CCACCTTCAGTTTCCCTCAAATCACTCTTTGGCAACGACCTCTTGTCACAGTAAAAATAG +GGGGACAGCTAAAAGAGGCTCTATTGGATACAGGAGCAGATGATACAGTATTAGAAGACA +TAAATTTGCCAGGAAAATGGAGACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAG +TAAAACAGTATGATCAAATATCTATAGAAATTTGTGGGAAAAAGGTTATAGGTACAGTAT +TAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACCCAGCTTGGTTGTA +CTTTAAATTTCCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGG +ATGGCCCAAGGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAA +TTTGTACAGAGATGGAGAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACA +ATACTCCAATCTTTGCTATAAAGAAAAAAGACAGTACTAAATGGAGGAAATTAGTAGATT +TTAGAGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTGGGAATACCGCATC +CAGCGGGCCTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTCT +CAGTCCCTTTATATGAAGACTTCAGAAAATATACTGCGTTCACCATACCTAGTACAAATA +ATGAGACACCAGGAGTTAGGTATCAGTATAATGTGCTTCCACAGGGATGGAAAGGATCAC +CAGCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGATCAAAAAATCCAG +AAATAATTATCTATCAATACATGGATGACTTGTATGTAGGATCTGATTTAGAAATAGGGC +AGCATAGAACAAAAATAGAAGAGTTAAGAGCTCATCTGTTGAGCTGGGGATTTACTACCC +CAGACAAAAAGCATCAGAAAGAACCACCATTTCTTTGGATGGGATATGAACTCCATCCTG +ACAAATGGACAGTCCAGCCTATAGAGTTGCCAGAAAAAGAAAGCTGGACTGTCAATGATA +TACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAGATTTATGCAGGGATCAAAGTAA +AGCAGTTGTGTAAGCTCCTCAGAGGAGCCAAAGCACTAACAGATATAGTAACAATGACTG +AGGAGGCAGAATTAGAGTTGGCAGAAAACAGGGAGATTCTAAAAGACCCTGTGCATGGGG +CATATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAGGGGCAGGACCAAT +GGACATATCAAATTTATCAGGAGCCATTTAAAAATCTAAAGACAGGAAAATATGCAAGAA +AAAGGTCTGCTCACACTAATGATGTAAAACAATTATCAGAAGTGGTGCAAAAGGTGGTCA +TGGAAAGCATAGTAATATGGGGAAAGACTCCCAAATTTAAATTACCCATACAAAAAGAAA +CATGGGAAACATGGTGGATGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTG +TCAATACCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGTAGGAG +CAGAGACTTTCTATGTAGATGGGGCAGCTAATAGGGAGACTAAGCTAGGAAAAGCAGGGT +ATGTCACTGACAGAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACAAATCAAAAGA +CTGAACTACATGCAATCCATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAATATAGTAA +CAGACTCACAATATGCATTAGGGATCATTCAGGCACAACCAGACAAAAGTGAATCAGAGT +TAGTCAATCAAATAATAGAGAAGCTGATAGGAAAGGACAAAGTCTACCTGTCATGGGTAC +CAGCACACAAAGGAATTGGAGGGAATGAACAGGTAGATAAATTAGTCAGCTCTGGAATCA +GAAAGGTGCTGTTTTTAGATGGGATAGATAAGGCCCAAGAAGACCATGAAAGGTATCACA +GCAATTGGAGAGCAATGGCTAGCGATTTTAATCTGCCACCTATAGTAGCAAAAGAAATAG +TAGCCAGCTGTGATAAATGTCAACTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTA +GTCCAGGGATGTGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATCTTGGTAGCAG +TCCATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGA +CAGCATACTTTCTGCTAAAATTAGCAGGTAGATGGCCAGTAAAAGTAGTACACACTGACA +ATGGTAGCAATTTCACCAGCGCTGCATTTAAAGCAGCCTGTTGGTGGGCAAATGTTCAAC +AAGAATATGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGG +AATTAAAGAAAATCATAGGGCAGGTGAGAGAGCAAGCTGAACACCTTAAGACGGCAGTAC +AAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACACTGCAG +GGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAAAATA +TTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAATTTGGAAAG +GACCAGCCAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGAGA +TAAAGGTAGTACCAAGAAGAAAAGCAAAAATCCTTAGGCATTATGGAAAACAGATGGCAG +GTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTATAGTAAAA +CATCATATATATAGCTCAAGGAGAGCTACAGGATGGTTTTATAGACATCACTTCGAAACA +AGGCATCCAAAAGTAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAGATTAGTAGTA +AAAACATATTGGGGTCTGCAACCAGGAGAACAAGATTGGCAGTTGGGTCATGGGGTCTCC +ATAGAATGGAGGCTAAGAAAGTATAGCACACAAATAGATCCTGACATGGCAGACCAACTA +ATTCATCTGCATTATTTTAATTGTTTTTCAGACTCTGCCATAAGGAAAGCCTTATTAGGA +CAAGTAGTTAGCCCTAGTTGTGACTATCAAGCAGGACATAACAAGGTAGGATCTCTACAA +TATTTGGCACTGAAAGCATTAGTAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTT +AAGAAGCTAACAGAGGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGC +CATTCAATGAATGGACATTAGAACTGTTAGAAGAGCTAAAGCATGAAGCTGTTAGACATT +TTCCTAGGCCATGGCTTCATGGGTTAGGACAATATATCTATGAGACCTATGGGGATACTT +GGGAAGGAGTTCAAGCTATAATAAGAATTTTGCAACAATTGCTGTTTATCCATTTCAGAA +TTGGGTGCCAACATAGCAGAATAGGCATTATTCCAGGGAGAAGAGGCAGGAATGGATCCA +GTAGATCCTAACCTAGAGCCCTGGAATCATCCGGGAAGTCAGCCTACAACTGCTTGTAGC +AAATGTTACTGCAAAGTGTGTTGCTATCATTGCCAAGTTTGCTTTCTGAACAAAGGCTTA +GGCATCTCCTATGGCAGGAAGAAGCGGAAACAGCGACGAGGACCTCCTCGCAGCAATAAA +GGTCATCAAAATCCTATACCAGAGCAGTAAGTAACAATAGTTAATATATGTAATGACTCT +TTTAGAAATCTGTGCAATAGTAGGACTGGTAGTAGCTTTTATCTTAGCAGTAGTTGTGTG +GGCTATAATAGGTATAGAATATAAGAAAATACTAAGGCAAAGAAAAATAGATAGGTTAAG +TGACAGAATAAGAGACAGAGCAGAAGAYAGTGGCAATGAAAGTGAGGGGGATACAGATGA +ACTCGCAGCACTTATTGAAATGGGGGGCTATGATCTTGGGAACGTTAATGATCTGTAGTG +CTGCAGATAAATTGTGGGTTACTGTCTATTATGGGGTGCCTGTGTGGAAGGATGCAGAGA +CCACCCTATTTTGTGCATCAGATGCTAAAGCATATAAGACAGAAAAGCATAATGTCTGGG +CTACGCATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATACATTTGGAAAATGTGA +CAGAAGAGTTTAACATGTGGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATCA +GTTTATGGGACCAAAGTTTAAAGCCATGTGTAAAGTTAACCCCTCTTTGTGTGACTTTAA +ATTGTAGCAACAACGTTACCATTACCAACAGCACTAATGAAGTAAGAAACTGCTCTTTCA +ATGTGACCACAGCAGTACAGGATAAGAAAGATAAAGTATGGTCACTTTTTTATAATCTTG +ATGTAGTACAAATAGGTAGTGAGAATAGTAGTCAATATAGATTAATAAATTGTAATACCT +CAGTCATTACACAGGCATGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTG +CTCCAGCTGGTTTTGCGATTCTAAAGTGTAATGATGAGAAGTTCACTGGAACAGGGTCAT +GCGATAATGTCAGCACAGTACAATGCACACATGGGATCAGGCCAGTAGTGTCAACTCAAC +TGCTGTTAAATGGCAGTCTAGCAGGAGACAAGGTAATGATTAGAACTGAAAATATCACAA +ACAATGCCAAAAACATAATAGTACAATTGAACAAGTCTGTAAAAATTAATTGTACCAGAC +CTGCCAACAATACAAGAAAAAGTATAACTATGGGACCAGGAAAGGCCTTCTTTGCAACAG +GTGGCATAATAGGGGATATAAGACAAGCACATTGTAATGTCAGTAAAACAGACTGGACTG +CAGCTTTGCACGATGTAAGCCAACAATTAAGAACATTCTTTGAGAATGAAACAACAATAA +TCTTTGCTAGCGCCTCAGGAGGGGATCTAGAAATTACAACACATAGTTTTAATTGTGGAG +GAGAATTTTTCTATTGTAACACATCAAGCCTGTTTAATAGCACCTTCAGGTCAAATAGCA +GCATAAGGGACATGGAGTTAAACGACACTATAACTCTCCAATGCAGAATAAAGCAAATTA +TAAACATGTGGCAGAGAACAGGACAAGCAATGTATGCCCCTCCCATCCCAGGAATAATAA +GGTGTGAATCCAACATTACAGGATTAATATTAACAAGAGATGGTGGGGGAGGGAATAGGA +GTAATGAAACCTTCAGACCTGTAGGAGGAGATATGAGGGATAATTGGAGAAGTGAATTAT +ATAAATATAAAGTAGTAAAAATTGAACCACTAGGAGTAGCACCCACCAGGGCGAAGAGAA +GAGTGGTGGGGAGAGAAAAAAGAGCAGTCGGACTGGGAGCTGTTTTCATTGGGTTCTTAG +GAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGGCAAT +TATTGTCTGGTATAGTGCAACAGCAAAATACTTTGCTGAGGGCTATAGAGGCTCAACAGC +ATTTGTTGAAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGACTCCTGGCTGTGG +AAAGATACCTAAAGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCATCT +GCACCACTAATGTGCCCTGGAACTCTAGTTGGAGTAATAAATCATATAGTGAGATATGGG +ATAATATGACTTGGATACAATGGGATAAAGAAATTAACAATTACACACAGATAATATATG +AGCTAATAGAAAAATCGCAGAACCAGCAGGAAATAAATGAACAAGACTTATTGGCATTGG +ACAAATGGACAAATTTGTGGAATTGGTTTGACATATCAAATTGGCTGTGGTATATAAAGA +TATTCATAATGATAGTAGGAGGCTTAATAGGGTTAAGAATAGTTTTTGCAGTGCTTTCTG +TAATAAGTAGAGTTAGGCAGGGATACTCACCTTTGTCTTTTCAGACCCATACCCCAAACC +CAACGGGACTCGACAGGCCCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGGCA +GATCCACGCGATTAGTGAACGGATTCTTAGCACTTGTCTGGGACGATCTTCGGAGCCTGT +GCCTCTTCAGCTACCACCAATTGAGGAACTTCATCTTGATTGTCGCGAGGACTGTGGAAC +TTCTGGGACGCAGCAGTCTCAAGGGGTTGAGACTGGGGTGGGAAGGCCTCAAGTATTGGG +GGAATCTCTTGATATATTGGGGTCGGGAGCTAAAAACTAGTGCTATTCATTTGTATGATA +CCATAGCAATAGTAGTAGCTGGCTGGACAGATAGGGTTATAGAACTAGGACAAAGGTTTG +GTAGAGCTATTTTACACATACCTAGAAGAATCAGACAGGGCTTAGAAAGGGCTTTGCTAT +AACATGGGGGGCAAGTGGTCAAAAAGTAGCCTAGTAGGGTGGCCTAAGATCAGGGAAAGA +ATAAGACAAACTCCCCCAACAGAAGGAGGAGATGCCCGGCTGCTGGAAGAGCAAGAAGAA +GAGGAGGTAGGCTTTCCAGTCAGGCCACAGGTACCTCTAAGACCAATGACTTGGAAGGCA +GCTATGGATATCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTAATTTACTCC +AAGAAGAGACAAGAAATCCTTGATCTGTGGGTATACAACACACAAGGTTTCTTCCCTGAC +TGGCAGAATTACACACCAGGGCCAGGGATCAGGTACCCACTAACATTTGGATGGTGCTTC +AAGCTAGTACCAGTTGATCCAGCAGAAGTGGAGAAGGCTAATGAGGGAGAGAATAACAGC +CTGTTACACCCTATATGCCAACATGGAATGGATGATGAGGAGAGAGAAACATTAATATGG +AAGTTTGACAGCAGCTTGGCATTTGTACACAAAGCCCAAGAGCTGCATCCGGAGTTCTAC +AAAGACTGCTGA +>A1.GB.2013.0.15171_1_44.3.MF109677 MF109677 +ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATACATGGGAGAAAATTCGG +TTAAGGCCAGGGGGAAAGAAAAAGTATAGATTAAAGCATCTAGTATGGGCAAGCAGGGAG +CTGGAAAGATTTGCACTTAACGCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATA +ATGAACCAGTTACAATCAGCTCTCAAGACAGGAACAGAAGACCTTAAATCATTATTTAAT +ACAGTAGCAGTCATCTATTGTGTACATCAAAGGATAGATGTAAGAGATACCAAAGAAGCT +TTAGATAAAGTAGAGGAGATACAAAACAAAAGTGCGCAAAAGACACAACAGGCAGCAGCT +GACACAGGAAGCAGCAACCAGGCCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGG +CAAATGATACACCAGGCTGTGTCACCTAGGACTTTAAATGCATGGGTGAAAGTAATAGAA +GAGAGGGCTTTCAGCCCAGAAGTGATACCCATGTTCTCAGCATTATCAGAAGGGGCCACC +CCGAGTGACTTAAATATGATGCTGAACATAGTGGGAGGACACCAGGCAGCTATGCAAATG +TTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGTTACATCCAGTACATGCA +GGGCCTATTGCACCAGGCCAGGTGAGAGAACCAAGGGGAAGTGATATAGCAGGAACTACT +AGTACCCTTCAAGAACAAATAGCATGGATGACAGCCAACCCACCTATCCCAGTGGGAGAC +ATCTATAAAAGATGGATCATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCAGTT +AGCATTTTGGATATAAAACAAGGACCAAAAGAACCCTTCAGAGATTATGTAGATAGGTTC +TTTAAAACTCTTAGAGCTGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAATCC +CTGCTGATCCAAAATGCAAATCCAGATTGTAAGAGCATTTTAAAAGCATTAGGAGCAGGG +GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCA +AGGGTTTTGGCTGAGGCAATGAGCCAAGCCCAACATACAAACATAATGATGCAGAAAGGC +AATTTTAGGGGCCAGAAAAGGATTAAGTGTTTCAACTGTGGCAAAGAAGGACATCTAGCC +AGAAATTGCAGGGCCCCTAGGAAAAGGGGCTGTTGGAAGTGTGGGAAGGAGGGACACCAA +ATGAAAGACTGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTCCAGCAAG +GGGAGGCCAGGAAATTTTCCACAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGCTC +TTTGGGATGAGGGAAGAGATAGCCCCCCCTCCGAAGCAGGAGCAGAACGACAGGGACAAC +ACCTTCAGTTTCCCTCAAATCACTCTTTGGCAACGACCTCTTGTCACAGTAAAAGTAGGA +GGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGATATA +AATTTGCCAGGAAAATGGAAGCCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTA +AGACAGTATGATCAGATACTTATAGAAATTTGTGGGAAAAAGGCTATAGGTACAGTATTA +GTAGGACCCACACCTGTCAACATAATTGGAAGAAATATGTTGACCCAGATTGGTTGTACT +CTAAATTTTCCAATTAGTAATGTTGAGACTGTACCAGTAAAACTAAAGCCAGGAATGGAT +GGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAGAAAATAAAAGCATTAACAGAAATT +TGTACAGAGATGGAAAAAGAGGGAAAAATCTCAAAAATTGGGCCTGAAAATCCATACAAT +ACTCCAATATTTGCTATAAAGAAAAAGGACAGCACTAAATGGAGAAAATTAGTAGATTTC +AGAGAACTCAATAAAAGAACTCAGGATTTTTGGGAAGTTCAATTAGGAATACCGCATCCA +GCGGGCTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGACGCATATTTTTCA +GTGCCTTTAGATGAAAGCTTTAGAAAGTATACTGCGTTCACCATACCTAGTACAAACAAT +GAGACACCAGGAATCAGGTATCAGTACAATGTGCTTCCCCAGGGCTGGAAAGGATCACCA +GCAATATTCCAGAGTAGCATGACAAAAATCTTACAGCCCTTTAGGTCAAAAAATCCAGAA +ATAATTATCTATCAATACATGGATGACTTATATGTAGGATCTGATTTAGAAATAGGGCAG +CATAGAGCAAAAGTAGAGGAGTTGAGAGCTCATCTGTTGAGCTGGGGGTTAACTACACCA +GACAAAAAGCATCAGAAAGAACCCCCATTTCTTTGGATGGGATATGAACTCCATCCTGAC +AAGTGGACAGTCCAACCAATACAGTTGCCAGAAAAGGAAAGTTGGACTGTCAATGATATA +CAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAAATTTATACAGGAATTAAAGTAAAA +CAATTGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGATATAGTACCATTAACTGAA +GAAGCAGAATTAGAATTGGCAGAGAACAGGGAGATTCTAAAAAACCCTGTGCATGGGGTA +TATTATGACCCAGCAAAAGACTTAATAGCAGAGATACAGAAACAAGGACAAGACCAATGG +ACATATCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCAAGACAG +AAGTCTACTCACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAAGTGGTTACA +GAAAGCATAGTAATATGGGGAAAAACTCCTAAATTTAAACTACCCATACAAAAAGAAACA +TGGGAAACATGGTGGAGGGACTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTC +AATACCCCTCCCCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGCAGGAGCA +GAGACTTTCTATGTAGATGGGGCAGCCAATAGGGAAACTAAGATAGGGAAAGCAGGGTAT +GTCACTGATAAAGGAAGACAAAAGGTTGTTTCCCTAAATGAGACAACAAATCAAAAGACT +GAATTACATGCAATCTATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAACATAGTAACA +GACTCACAGTATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGAATCAGAGATA +GTCAATCAAATAATAGAGAAGTTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTACCA +GCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTGGTCAGTTCTGGAATCAGA +AGGGTGCTATTTTTAGATGGGATAGATAAAGCTCAAGAAGATCATGAAAAATATCACAGC +AATTGGAGAACAATGGCTAGTGATTTTAATCTGCCACCTGTAATAGCAAAGGAAATAGTA +GCCAGCTGTGATAAATGCCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGCAGT +CCAGGGATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTAATTCTGGTAGCAGTC +CATGTAGCCAGTGGCTATATAGAAGCAGAAGTCATCCCAGCAGAAACAGGACAGGAGACA +GCATACTTTTTGCTAAAACTAGCAGGAAGATGGCCAGTAAAAATGGTACACACAGACAAT +GGCACCAATTTCACCAGCGCTGCCTTTAAAGCAGCCTGTTGGTGGGCAAATGTTAAACAG +GAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTGGTAGAATCTATGAATAAAGAA +TTAAAGAAAATCATAGGGCAAGTAAGAGAGCAAGCAGAACACCTTAAGACAGCAGTACAA +ATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGG +GAAAGAATAATAGACATAATAGCAACAGACATACAAACTAGAGAATTACAAAAACAAATT +ACAAATATTCAAAAATTTCGGGTCTATTACAGGGACAGCAGAGATCCAATTTGGAAAGGA +CCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTGGTCATACAGGATAATAGTGATATA +AAGGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGT +GATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACA +TCATATGTATGTCTCAAGAAAAGCTAGCAAGTGGTTTTATAGACATCACTATGAAAGCAG +GCATCCAAAAGTGAGTTCAGAAGTACACATCCCACTAGGGGACTATGTTAGTAGTAAGAA +CATATTGGGGACTGCATACAGGAGAAAAAGACTGGCACTTGGGTCATGGGGTCTCCATAG +AATGGAGGCTCAAACGATATAGCACACAAATAGACCCTGACCTGGCGGACCAACTAATTC +ATCTGCATTATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAGGCCATATTAGGACAAG +TAGTTAGCCCTAGTTGTGAATATCAAACAGGACACAGCAAGGTAGGATCTCTACAATATT +TAGCACTAAAAGCACTAGTAACACCAATAAGGGTAAAGCCACCTCTGCCTAGTGTTAGGA +AATTAGCAGAGGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCTCAAAGGGAACCATA +CAATGAATGGATGTTAGATCTGTTAGAAGATCTGAAGAATGAAGCCGTTAGACATTTCCC +TAGGCCATGGCTTCATGGATTAGGACAACACATCTACAACACCTATGGGGATACTTGGGA +AGGGGTTGAAGCTATAGTAAGAATTCTGCAACAACTACTGTTTGTTCATTTCAGAATCGG +GTGCCAACATAGCAGAATAGGCATTATTCAAGGGAGAAGAGGCAGGAATGGAGCCGGTAG +ATCCTAACCTAGAGCCCTGGAACCATCCGGGAAGTCAGCCTACAACTCCTTGTAGCAAGT +GTTACTGTAAAGTGTGTTGCTATCATTGCGTAGTTTGCTTTCAGAAAAAAGGCTTAGGCA +TCTCCTATGGCAGGAAGAAGCGGAACCAGCGACGAGGACCTCATCAAAACAGTGAGACTC +ATCAAAATCTTGTACCAAAGCAGTAAGAGTAAATGTAATGNCTTTGGAAATCTATGCAAT +AGCAGGACTAGTAGTGGCACTAATCATAGCAATAGTTGTGTGGACTATAGTAGGTATAGA +ATATAAGAGATTGCTAAAGCAAAGGAAAATAGATAGGTTAATTGAGAGAATAAGGGAAAG +AGCAGAAGACAGTGGCAATGAGAGTGAGGGGGATACAGAGGAATTGGCAGCACTTGTCGA +GATGGGGACTATAATCTTGGGTATGATAATGATCTGTAGTGCTACAAACTTGTGGGTTAC +TGTCTACTATGGGGTACCTGTGTGGAAAGATGCAGAGACCACTCTATTTTGTGCATCAGA +TGCTAAAGCACATAAGGCAGAAGTGCATAATGTATGGGCTACACATGCCTGTGTGCCCAC +AGACCCCAACCCACAAGAAATAAAGTTGGAAAATGTGACAGAAGAGTTTAACGTGTGGAA +AAACAGCATGGTAGAGCAGATGCAGACAGATATAATCAGTCTATGGGACGAAAGCCTAAA +GCCATGTGTAAAGTTAACCCCTCTCTGCGTCACTTTACAGTGTACCAATAACGTTACCAA +GAACAGCACGGGAGAAATAAAAAACTGCTCTTTCAATATGACCACAGAACTAAGGGATAA +GAAACATAAAACATATGCACTTTTTTATAGACTTGATATAGTACCCATNTATAGATTAAT +AAATTGTAATACCTCAGCCATTACACAAGCTTGTCCAAAGGTAACCTTTGAGCCAATTCC +TATACATTATTGTGCCCCAGCTGGTTTTGCAATCCTAAAGTGCAATGATGAGAAATTCAA +TGGAACAGGGCTATGCAGGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGT +AGTATCAACTCAACTGCTGTTAAATGGTAGTCTAGCAAAAAACGGGGTAAAACTTAGATC +TGAAAATATCACAAACAATGCCAAAACCATAATAGTACAACTTGACAAACCTGTAAGAAT +TAATTGTACCAGACCTAACAACAATACAAGAAAAAGTATCCATATAGGGCCAGGACAAGC +ATTCTATGGAGCAGGTGATATAATAGGGGATATAAGGCAAGCACATTGTAATGTCAGTAG +TTCAGATTGGAATGAAACTCTACAAGAGGTAGTCAAACAATTAAGAGAACACTGGAACAC +AACAATAATCTTTAATAGCTCAGCAGGAGGGGATTTAGAAATTACAACACATAGTTTTAA +TTGTGGAGGAGAATTTTTCTATTGTAATACATCAAACCTGTTTAATATAACTCTTCAATG +CAGAATAAAGCAAATTATAAATATGTGGCAGAGAGCAGGACAGGCAATGTATGCCCCTCC +CATCCCAGGAATAATAAGGTGTGATTCAAACATTACAGGAATATTATTAACAAGAGATGG +TGGNGAAACCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATA +TAAGTATAAAGTAGTAAAAATTGAACCACTAGGAATAGCACCCACCAGGGCACGGAGAAG +AGTGGTGGAGAGAGAAAAAAGAGCAGTTGGACTGGGAGCTGTATTCATTGGGTTCTTAGG +AGCAGCAGGAAGCACTATGGGCGCGGCGTCAATGACGCTGACGGTACAGGCCAGACTATT +ATTGTCTGGCATAGTGCAACAGCAAAGTAATTTGCTGAGGGCTATAGAGGCTCAACAGCA +TCTGTTGAAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGA +GAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCATCTG +CACCACTAATGTGCCCTGGAACTCTAGTTGGAGTAATAAAAATCTCAGTGGGATATGGGA +TAACATGACCTGGCTGCAATGGGACAAAGAAATTAGCAATTACACAGAAGAAATATATAA +ACTGATTGAAGAGGCGCAAAACCAGCAGGAAAAGAATGAACAAGAATTATTGGCATTGGA +CAAGTGGGCAAATCTGTGGAGTTGGTTTGACATATCAAACTGGCTGTGGTATATAAGAAT +ATTTATAATGATAGTAGGAGGCTTAATAGGACTAAGAATAGTTTTTGCTGTGCTTTCTGT +AATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGACCCATACCCCGAACCC +ACGGGGTCTCGACAGGCCCGAAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGACAG +ATCGATTCGATTAGTCAGCGGCTTCTTAGCGATTGCCTGGGACGACCTGCGGAGCCTGTG +CCTCTTCAGCTACCACCGATTGAGAGACTTCACCTTGATTGCAGCGAGGACTGTGGAGGG +GTGGAAGGGACTCAAGTATCTGGGGAATCTCCTACTGTATTGGGGTCGGGAACTAAGAAT +TAGTGCTATTAGTTTGTTTGATACCATAGCAATAGTAATAGCTGGCTGGACAGACAGGGT +TATAGAAATAGGACAAAGAATTGGTAGAGCTTTTCTCAACATACCTAGAAGAATCAGACA +GGGCACCGAAAGGGCTTTACTATAAAATGGGTAACAAGTGGTCAAAGGGATGGCCTCAGG +TTAGGGAAAGAATGAGACGCAGCAGCAAAAGGAGTAGGAGCAGTATCACAAGATCTAGAA +AAACATGGAGCAATCACCAGCAGCAATATAAATCACCCTAGTTGTGTCTGGCTGGAAGCA +CAAAAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCACAAGTACCTTTAAGACCAATGACT +TACAAAGGAGCTTTTGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTA +ATTTACTCCAGGCAAAGAGCTGACATCCTTGATCTGTGGGTCTACAACACACAAGGCTAC +TTCCCTGATTGGCAGAATTACACACCAGGGCCAGGGATTAGATACCCACTAACATTTGGA +TGGTGTTTCAAGCTAGTACCAGTTGATCCAGATGAAGTAGAGAAGGCTAATGAGGGAGAG +AACAATAGCCTATTACACCCTATGTGCCAACATGGAATGGATGATGAAGAGAAAGAAACA +TTAAAGTGGGTGTTTGACAGCCGCCTGGCATTAAAACACAGAGCCCTAGAGCTGCATCCG +GAGTTCTAG +>A1.TZ.2005.0.CO3083V4.KX907364 KX907364 +GCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTAAGG +CCAGGGGGAAAGAAAAAATATAAAATGAAACATCTAGTATGGGCAAGCAGGGAGCTGGAA +AGATTCGCACTTAACCCTAGCCTTTTAGAAACGACAGAAGGGTGTCAACAAATAATGGAA +CAGTTACATTCAGCTCTCAACACAGGAACAGAAGAACTTAAATCATTGTTTAATACAGTA +GCAACCCTCTATTGTGTACATCAAAAGATAGATGTAAGAGACACCAAAGAAGCTCTAGAT +AAAATAGAGGAAATAAAAAATAAGAGCAAGCAAAAGACACAACAAGCAGCAGCTGACACA +GGAAACAGCAGCAAGGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATG +ATACACCAGAACTTGTCACCTAGGACTTTAAATGCATGGGTGAAAGTAATAGAAGAAAAG +GCTTTCAGCCCAGAAGTAGTACCCATGTTTTCAGCATTATCAGAAGGAGCCACTCCACAA +GATTTAAATATGATGTTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAATGTTAAAA +GATACCATCAATGAGGAAGCTGCAGAATGGGACAGGCTACATCCAACACATGCAGGGCCT +ATCCCACCAGGCCAGATAAGAGAACCAAGGGGAAGTGATATAGCAGGAACTACTAGTACC +CCTCAAGAACAGCTACAATGGATGACAGGCAACCCACCTATCCCAGTGGGAGACATCTAT +AAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGGATGTATAGCCCTGTTAGCATT +TTGGATATAAGACAAGGGCCAAAAGAACCCTTCAGAGATTATGTAGATAGGTTCTTTAAA +GCTCTCAGAGCTGAGCAAGCTTCACAAGATGTAAAAAATTGGATGACAGACACATTACTG +GTCCAAAATGCGAATCCAGATTGTAAGTCCATTTTAAAAGCATTAGGAGCAGGGGCTACA +TTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAGGCAAGGGTT +TTAGCTGAGGCAATGAGTCAAGCACAACATGCAAACATAATGATGCAGAGAGGCAATATT +AGGGGTCAAAGAAGGATTAAGTGCTTTAACTGTGGCAAAGAAGGACACCTAGCCAGAAAT +TGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGGAAAGAGGGACACCAAATGAAA +GACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGG +CCAGGGAATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGACCTCCTYGGG +ATGGGGGAAGAGATAACTTCCCCTCAGAAGGAGCAGAAAGACAGGGAACTGGGCCCACCC +TTAGTTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTTACAGTAAAAATAGGAGGAC +AGATAAAAGAAGCTCTGTTAGATACAGGAGCAGATGATACAGTATTAGAAGATATAAATT +TGCCAGGAAAATGGAAACCAAGAATGATAGGGGGAATTGGAGGGTTCATTAAGGTAAAAC +AGTATGATCAGATATCTATAGAAATTTGTGGGAAAAAGGCTATAGGTACAGTATTGGTAG +GACCCACACCTGTCAACATAATTGGAAGAAATATGTTGACCCAGATTGGTTGTACTTTAA +ATTTCCCAATTAGTCGTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGTC +CAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTA +CAGAGATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTC +CAATATTTGCTATAAAGAAAAAAGACAGCACTAAATGGAGGAAATTAGTAGATTTTAGAG +AGCTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCGCATCCAGCGG +GACTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGGGATGCATATTTTTCAGTTC +CTTTAGATGAAAGCTTTAGAAAGTACACTGCGTTCACCATACCCAGTACAAACAATGCAA +CACCTGGAGTCAGGTATCAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCGGCAA +TATTCCAGAGTAGCATGACAAAGATCTTAGAGCCCTTTAGATCAAAAAATCCAGACATAA +TCATCTATCAATACATGGATGACTTGTATGTAGGATCTGATTTAGAAATAGGGCAGCATA +GAACAAAAGTAGAAGAATTGAGGGCTCATCTATTGAGCTGGGGATTGACTACCCCAGACA +AAAAGCATCAGAAAGAACCACCATTCCTTTGGATGGGATATGAACTTCATCCTGACAAGT +GGACAGTCCAGCCTATAGAGCTGCCAAAAAAGGAAAGCTGGACTGTCAATGATATACAGA +AATTAGTGGGAAAACTAAATTGGGCAAGTCAAATTTATCCAGGGATTAAAGTAAAGCAAC +TGTGTAAACTCCTCAGGGGAGCCAAAGCACTAACAGATATAGTAACAATGACTGAGGAAG +CAGAATTAGAATTGGCAGAAAACAGGGAGATTCTAAAAGACCCTGTGCATGGAGTATACT +ATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACAT +ATCAAATTTATCAAGAACCATTTAAAATTCTAAAAACAGGAAAATATGCCAGAAAGAGGT +CTGCTCACACTAATGATGTAAAACAATTAACAGATGTGGTGCAAAAGGTGGTCATGGAAA +GCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGG +AAACATGGTGGGTGGACTATTGGCAGGCTACCTGTATTCCTGAATGGGAGTTTGTCAATA +CCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAGAAGGAGCAGAGA +CTTTCTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTCA +CAGACAAAGGAAGACAAAAGGTTGTTTCCCTGACTGAGACAACAAATCAAAAGACTGAGC +TACATGCAATCCATCTAGCTTTGCAGGATTCAGGATCAGAAGTAAATATAGTAACAGATT +CACAGTATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGACTCAGAGTTAGTCA +ACCAAATAATAGAGAAGCTAATAGGAAAGGACAAAGTCTACCTGGCATGGGTACCAGCAC +ACAAAGGAATTGGAGGGAATGAACAAGTAGATAAATTAGTCAGTTCTGGAATCAGAAAGG +TGCTGTTTTTGGATGGGATAGATAAAGCTCAAGAAGACCATGAGAAATATCACAGCAACT +GGAGAGCAATGGCTAGTGATTTTAATCTGCCACCTATAGTAGCAAAGGAAATAGTAGCCA +GCTGTGATAAATGTCAACAAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAG +GGATGTGGCAATTAGATTGCACACATTTAGAAGGAAAAGTAATTCTGGTAGCAGTCCATG +TAGCCAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACAGGAT +ACTTTCTGCTAAAATTAGCGGGAAGATGGCCAGTAAAAGTAGTACACACAGATAATGGCA +GCAATTTCACCAGCGCTGCGTTTAAAGCAGCCTGTTGGTGGGCAGGTATCCAACAGGAAT +TTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAGGAATTAA +AGAAAATCATAGGACAAGTAAGAGAGCAAGCTGAGCACCTTAAAACAGCAGTACAAATGG +CAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAA +GAATAATAGACATGATAGCAACAGACATACAAACTAAAGAATTACAAAAAAATATTACAA +AAATTCAAACTTTTCAGGTTTATTACAGAGACAGCAGAGATCCGATTTGGAAAGGACCAG +CAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGATATAAAGG +TAGTACCAAGAAGAAAAGCAAAAATCATTAGGAATTATGGAAAACAGATGGCAGGTGATG +ATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCAT +ATGCATGTCTCAAAGAAAGCAAAAAATTGGTTTTATAGACATCACTTTGAAAGCAGGCAT +CCAAAAGTAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAATAGTTAGGACA +TATTGGGGTCTGCATACAGGAGAAAAAGATTGGCAATTGGGTCATGGGGTCTCCATAGAA +TGGAGGCAAAAAAGATATAGCACACAAATAGATCCTGATCTGGCAGACCAACTAATTCAT +CTGCACTATTTTCAATGTTTTTCAGACTCTGCCATAAGGAAAGCAATATTAGGACAAGTA +GTTAGCCCTAGTTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATATTTG +GCACTGAAAGCATTAATAACACCAAAAAGAAGAAAGCCACCTTTGCCTAGTGTTAGGAAA +TTAACAGAGGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGCCATACA +ATGAATGGGCATTAGAACTGTTAGAAGAGCTTAAGCATGAAGCTGTTAGGCACTTTCCTA +GGCCATGGTTACATGGATTAGGGCAACATATCTATAATACCTATGGGGATACTTGGGAAG +GAGTTGAAGCTATAATAAGAATGTTGCAACAATTACTGTTTGTTCATTTCAGAATTGGGT +GCCAACATAGCAGAATAGGTATTATGCGGGGGAGAAGAGTCAGGAATGGATCCAGTAGAT +CCTAACCTAGAGCCTTGGAACCACCCGGGAAGTCAGCCTGCAACTGCTTGTAGCCAGTGT +TATTGTAAAGTGTGTTGCTATCATTGCCAGTGGTGCTTTCTGCGCAAAGGCTTAGGCATC +TCCTATGGCAGGAAGAAGCGGAGACAGCGACGAGGACCTCCTCAGAGCAATAAGGATCAT +CAAAATCCTATACCAAAGCAGTAAGTATTAGCAGTTAGTATATGTAATGACTCCTTTGGA +AATCAGTGCAGTAGCAGGACTGATAGTGGCGCTAATTCTAGCAATAGTAGTGTGGACTAT +AGTAGGGATAGAATATAAGAGATTGCTAAAGCAAAGAAAAATAGATAGGTTAATTAAGAG +AATAAGAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGACGGGGACACAGATGACCTCGC +AACACTTATCAATATGGGGGACTATGATCTTGGGAATGATAATAATCTGTAATGCTACAA +CTACAGACAAGATGTGGGTTACGGTCTACTATGGGGTACCTGTGTGGAAAGATGCAGAGA +CCACCCTATTTTGTGCATCAGATGCAAAAGCATATGATCCAGAAATGCATAATGTCTGGG +CTACACATGCCTGTGTTCCTACAGACCCTAACCCACAAGAAATAAATTTGGAAAATGTGA +CAGAACAGTTTAACATGTGGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATCA +GTCTATGGGACCAAAGCCTAAAACCATGTGTAAAGTTAACCCCTCTCTGTGTTACTCTAG +AATGTACCAATGCCAATATCACCAATAATATCACCAATGCCAATGTCACCAATGACATGC +AAGAAGTAAAAAACTGCTCTTTCAATATAACCACAGAACTAAGGGATAAAAGAAAGAAAA +TATATTCACTTTTTTATAGACTTGATATAGTACAAATAAATGAAGGGGAGGATACTAATA +ATAGTAGTAATAGTAGTCAGTATAGATTAATAAACTGTAATACCTCAGCCATCACACAAG +CTTGTCCAAAGGTAACCTTTCAGCCAATCCCCATACATTATTGTGCCCCAGCTGGTTTTG +CGATTCTAAAGTGTAATGATGAGGATTTCAATGGGACAGGACTATGTAAGAATGTCAGCA +CAGTACAATGCACACATGGAATCAAGCCAGTAGTATCAACGCAACTGCTGTTAAATGGAA +GTCTAGCAGAAGGAAATGTAACAATTAGATCTGAAAATTTTACAAACAATGCCAAAAACA +TACTAGTACAATTTAAAAAGCCTGTACAAATTAATTGTACTAGACCTAGCAACAATACAA +GGACAAGTGTACGTATAGGACCAGGACAATCATTCTATGCAACAGGTGCCATAATAGGGG +ATATAAGACAAGCACATTGCAATGTCAGTGCAGCAGAATGGAATACAACTTTGAAAAGTG +TGGTTGACCAATTAAGAAAACACTTTGGAGAAAACAAAACAATAATYTTTACTAACCACT +CAGGAGGGGATCTAGAAATTACAACACATAGTTTTAATTGTGGAGGAGAATTTTTCTATT +GTAACACATCAGCCCTGTTCAATAGCAGTTGGAGTAGTGTAAATGACAGCGGGAACATTA +GCCCAGAGCCAAACAAAAATATAACCCTCCGATGCAGAATAAAGCAAATTATAAATATGT +GGCAGAGAGTAGGACAAGCAATATATGCCCCTCCCATCCAAGGAGTAATAAGGTGTGACT +CAAACATTACGGGATTAATATTAACAAGCGATTATGGAGGGACTAACAGTACACATGAAA +TCTTCAGACCTGCAGGAGGAAATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATA +AAGTAGTACAAATTGAACCAATAGGAGTAGCACCCATCAGGGCAAAGAGAAGAGTGGTGG +AGAGAGAAAAAAGAGCAGTCGGACTGGGAGCTGTCTTCCTTGGTTTCTTAGGAGCAGCAG +GAAGCACTATGGGCGCGGCGTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTG +GTATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCTCAACAGCATCTGTTGA +AACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAGAGATACC +TAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAGCTCATCTGCACCACTA +ATGTGCCCTGGAACTCTAGTTGGAATAATAAATCCTTCAATGAAATATGGGACAACATGA +CCTGGCTGCAATGGGATAAAGAAATTAGCAATTACACACAGATAATATATGACCTAATTG +AAGAATCGCAGAACCAGCAGGAAAAGAATGAACAAGATTTATTGGCATTGGACAAGTGGG +CAAATCTGTGGAATTGGTTTGACATATCAAACTGGTTGTGGTATATAAGAATATTTATAA +TAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTGTTGCAGTGTTTTCTATAATAAATA +GAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGATCCATACCCCAAACCCAGGGGGTC +CCGACAGGCCCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGGCAGATCGATTC +GATTAGTGAGCGGATTCTTAGCACTTGCGTGGGACGATCTCAGGAACCTGTGCCTCTTCA +GCTACCACCGATTGAGAGACTGCATCTTGATTGCCGCGAGGACTGTGGAACTTCTGGGAC +GCAGCAGTCTCCAGGGGTTGAGACTGGGGTGGGAAGGCCTCAAGTACCTGGGGAACCTCC +TGGAATATTGGGTTCGGGAGCTAAAAATTAGTGCTATTAATTTGCTTGATACCATAGCAA +TAGCAATAGCTAACTGGACAGATAGGGGTATAGAAATAGGACAAAGACTTTGTAGAGCGC +TTTTAAACATACCTAGAAGAATCAGACAGGGCTTTGAAAGGGCTTTGCTATAACATGGGG +GGCAAGTGGTCAAAAAGTAGCATAGTGGGCTGGCCTGAGGTTAGGGAAAGAATAAGACAA +ACTCCAGCAGCAGCAAGAGGAGTGGGAGCAGTATCTCAAGATTTAGATAAACATGGAGCA +ATCACAAGCAGCAATATAAATCACCCTAGTAACACCTGGCTGGAAGCGCAAGAGGAAGGG +GACGAAGTAGGCTTTCCAGTCAGGCCACAGGTCCCTACAAGACCAATGACTTACAAGGCA +GCTGTGGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTAATTCACTCC +AGACAGAGACAAGATATCCTTGATCTGTGGGTATACAACACACAAGGCTTCTTCCCTGAT +TGGCAGAACTACACTCCAGGGCCAGGGATTAGGTATCCACTAACATTTGGATGGTGCTTC +AAGCTAGTACCAGTTGATCCAGGAGAAGTAGAGAAGGCTACTGAGGGAGAGAACACCAGC +CTATTACACCCTATAAGTCAACATGGAATGGATGATGATGAGAAAGAAACATTAATGTGG +AAGTTTGACAGCAGGCTGGCCTTTAAACACACAGCCCGTGAGCTGCATCCGGAGTTCTAC +AAAGACTGCTGACACAGAAACTGCTGATGGGGACTTTCCGCTGGGGACTTTCCAGGGGAG +GTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAA +>A6.RU.2016.0.RU_ERS_1091_2016.MT369972 MT369972 +TGCTGAGTGCACACAGCAAGAGGCGAGGCGGCGGCGACTGGTGAGTACGCCTAAGATTTT +TGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCGGTCTTAAGCGGGGGA +AAATTAGATGCATGGGAAAAAATTCGGTTACGGCCAGGGGGAAAGAAACAATATAGAATA +AAACACCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCGCTTAACCCTAGCCTTTTA +GAAACATCAGAAGGATGTCAACAAATACTGGAGCAGTTACAATCAACGCTCAAGACAGGA +TCAGAAGAACTTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCAAAGG +ATAGAAATAAAAGACACCAAGGAAGCTTTAGATAAAATAGAGGAAATACAAAATAAGAAC +AAGCAAAAGACTCAACAGGCAGCAACTGGCACAGGAAGCAACAGCAAGGTCAGTCAAAAC +TACCCCATAGTGCAAAATGCACAAGGGCAAATGACACACCAGTCCATGTCACCTAGGACT +TTGAATGCATGGGTGAAAGTAATAGAGGAAAAGGCTTTCAGCCCAGAAGTAATACCCATG +TTTTCAGCATTATCAGAGGGAGCCACCCCACAAGATTTAAACATGATGTTGAACATAGTG +GGGGGACACCAGGCAGCTATGCAAATGTTAAAAGATACCATCAATGAGGAAGCTGCTGAA +TGGGATAGGATACATCCAGCACARGCAGGGCCTTTTCCACCAGGGCAGATGAGAGAACCA +AGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACA +AGCACCCCACCTATTCCAGTGGGAGAAATCTATAAAAGATGGATAATCCTAGGAYTAAAT +AAAATAGTACGAATGTATAGCCCTGTTAGCATTCTAGACATAAGACAAGGGCCAAAAGAA +CCCTTCAGAGACTATGTAGATAGATTCTTTAAAACTCTTAGAGCTGAGCAAGCTACACAG +GAGGTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCAAACCCAGATTGTAAA +AGTATTTTAAGAGCATTAGGATCAGGGGCTACATTAGAAGAAATGATGACAGCATGCCAG +GGAGTGGGAGGACCCGGCCACAAAGCAAGGGTTTTGGCCGAGGCAATGAGTCAAGTACAA +AATGCAAACATAATGATGCAGAAAAGTAATYKTAGGGGCCCAAAAAGAATTAAGTGTTTC +AACTGTGGCAAAGAAGGACACTTAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGT +TGGAAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTT +TTAGGGAGGATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTCCCTCAGAGCAGACCA +GAGCCATCAGCCCCACCAGCAGAGAACTTTGGGATAAGGGAAGAGATAACCCCCTCCCTG +AAACAGGGGCAGACAGACAGGGACCAACATCCTCCTTCAATTTCCCTCAAATCACTCTTT +GGCAACGACCCCTTGTCACAGTAAAAATAGGAGGACAGATAAAAGAAGCTCTATTAGATA +CAGGAGCAGATGATACGGTATTGGAAGACATAAATTTACCAGGAAAATGGAAACCAAAAA +TAATAGGGGGAATTGGAGGTTTTATCAAGGTAAGACAGTATGATCAGATACTCATAGAAA +TTTGTGGAAAAAAGGCTATAGGTACGGTATTAGTAGGGCCTACCCCTGTCAACATAATTG +GAAGAAATATGTTGACTCAGCTTGGTTGTACTTTAAATTTTCCAATAAGTCCTATTGAAA +CTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTAA +CAGAGGAAAAAATAAAAGCATTAATAGACATTTGTAAGGAGATGGAAAAGGAAGGAAAAA +TTTCAAAAGTTGGGCCTGAAAATCCATACAATACTCCAGTATTTGTTATAAAGAAAAAAG +ATAGCACTAAGTGGAGGAAATTAGTAGATTTCAGGGAGCTCAATAAAAGAACTCAGGACT +TTTGGGAAGTTCAATTAGGAATACCCCACCCAGCGGGCTTAAAAAAGAAAAAATCAGTAA +CAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGATAAAAACTTCAGAAAGT +ATACTGCATTCACTATACCAAGTACAAACAATGAGACACCAGGGATCAGATATCAGTACA +ATGTACTCCCACAGGGATGGAAAGGATCACCATCAATATTCCAGAGTAGCATGACAAAAA +TCTTAGAGCCATTTAGAGAAAGAAATCCAGAAATAGTTATCTATCAATACATGGATGACT +TGTATGTAGGCTCTGATTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGTTAAGAG +CTCATCTATTGAGCTGGGGATTTACTACACCAGACAAAAAGCATCAGAAAGAACCTCCAT +TTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAGCCTATAATACTAC +CAGATAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGG +CAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAATTGTGTAAACTCCTCAGGGGAGCCA +AAGCACTGACAGAKGTAGTGACACTGACTAAGGAAGCAGAATTAGAATTGGAGGAGAACA +GAGAGATTTTAAAAGAACCTGTGCATGGAGTATATTATGACCCATCAAAAGATTTAGTAG +CAGAAATACAGAAACAAGGACAAGGTCAATGGACATATCAAATTTATCAGGAGCCATTTA +AAAATCTAAAAACAGGTAAATATGCAAAAAGGGGGTCTGCTCATACGAATGACGTGAAAC +AATTAACAGCAGTRGTGCAAAAAGTGGCCACAGAAGGCATAATAATATGGGGAAAGATTC +CTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAGCATGGTGGATGGAGTATTGGC +AGGCTACCTGGATTCCTGAATGGGAGTGTATCAATACYCCTCCTCTAGTAAAACTATGGT +ACCAATTGGAAAAAGAACCCATAATGGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTA +ACAGGGAGACTAAGATAGGAAAAGCAGGGTATGTTACTGACAGAGGAAGACAAAAGATTG +TTCCTCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATCCATCTAGCTTTAC +AGGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATTATTC +AGGCACAACCAGACAGGAGTGAATCAGARATAGTCAATAAAATAATAGAGAAACTAATAG +GAAAAGAAAGAGTCTACCTGTCATGGGTACCAGCGCACAAGGGGATTGGAGGAAATGAAC +AAGTGGATAAATTAGTTAGTAATGGAATCMGGAGGGTGTTATTTTTAGAAGGRATAGATA +GGGCTCAAGAAGACCATGAAAAATATCACAGCAATTGGAAAGCAATGGCTAGTGATTTTA +ATCTGCCACCTGTAGTAGCAAAGGAAATAGTAGCTAGCTGTAATAAATGCCAATTAAAAG +GGGAAGCTATGCATGGACAGGTAGACTGTAGTCCGGGGATATGGCAATTAGATTGTACAC +ATCTAGAAGGAAAAGTAATCATAGTAGCAGTCCATGTAGCCAGTGGATATATAGAAGCAG +AAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTCCTGCTAAAATTAGCAGGAA +GATGGCCAGTAAAAGTAGTACACACAGATAATGGCCCAAATTTCACCAGCAGTGCAGTTA +AGGCTGCCTGTTGGTGGGCAAATATTCAACAGGAATTTGGGATTCCCTACAATCCCCAAA +GTCAAGGAGTAGTGGAGTCTATGAATAAGGAATTAAAGAAAATCATCGGGCAGGTAAGAG +AGCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAA +GAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAG +ACATACAAACTAAAGAATTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATT +ACAGAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAG +GGGCAGTGGTAATACAGGACAATAACGATATAAAAGTAGTACCAAGAAGAAAAGCAAAGA +TTATTAGAGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAATAGACAGGATG +AAGATTAGAACATGGCATAGTTTAGTAAAACATCATATATATGTCTCAAAGAAAGCTAGA +GAGTGGCTTTATAGACATCATTATGAAAGCAGACATCCAAGAGTAAGTTCAGAAGTACAC +ATCCCACTAGGGGATGCTAGGCTAGTAGTAAAAACATATTGGGGTCTGCATGCAGGAGAA +AGAGACTGGCACTTGGGTCATGGGGTCTCMATAGAATGGAGACAGGAAAGGTATAGCACA +CAAATAGAYCCTGACCTGGCGGACCAACTAATTCATCTGTATTATTTTGACTGTTTTTCA +GAATCTGCCATAAGGAAAGCCATAGTAGGACAAGTAGTTAGCCCTAGGTGTAACTATCCA +GCAGGACACAACCAGGTAGGACCTCTACAATATTTGGCACTGAAAGCAATAGTAACACAA +ACAAGAGAAAGGCCACCCTTGCCTAGTGTTAGGAAACTAACAGAGGATAGATGGAACAAG +CCCCAGAAGACCAGGGACCGCAGAGGGAACCATACAATGAATGGATGTTAGAACTGTTAG +AAGATCTTAAGCATGAAGCTGTCAGACATTTTCCAAGGCCRTGGCTCCATGGATTAGGAC +AACATATCTATAACACCTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGAACTT +TGCAACAACTATTGTTTGTTCATTTCAGAATTGGGTGCCAACATAGCAGAATAGGCATTG +TGCAAAGGAGAAGAGTAAGGAATGGATCCAGTAGATCCTAACCTAGAGCCCTGGAATCAT +CCGGGAAGTCAGCCTAAAACTGCTTGTAGCAATTGTTATTGTAAAATGTGTTGCTGGCAT +TGCCAAGTTTGCTTCTTAAAAAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGA +CGCAGACACGGAGYTCATCACAACAGTCAGGATCATCARAATCTTATACCAAAGCAGTGA +GTACTAAATAAATGTAATGAAACCTTTAGAAATCTGTGCAATAGCAGCATTAGTAGTAGS +ATCTGTCATAGCAATAGTTGTGTGGACTATAGTAGGTATAGAATATAGGAAATTGCTAAA +ACAAAGAAAAATAGAYAGGTTAATTGAGAGAATAAGAGAAAGAGCAGAAGACAGTGGCAA +TGAAAGCGAGGGGGATGAAGAGGAATTATCAACACTTATGGAGGTGGGGAACCATGCTCT +TTTGGATGATAATAATGTGTAAGGCTACAGGAAACTTGTGGGTCACGGTATACTATGGGG +TACCTGTGTGGAGAGATGCAGAGACCACCCTATTTTGTGCATCAGATGCTAAAGCGTATG +ATAAAGAAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAGCCCAC +AAGAAATAGATTTGGAAAATGTGACAGAAGATTTTAACATGTGGAAAAATAAYATGGTAG +AACAAATGCAGGCAGATATAATCAGTCTCTGGGACCAAAGCCTAAAGCCATGTGTAAAGT +TAACCCCTCTCTGTGTTACCTTAAATTGTACTAACCCCCAAAGCAATAACAGCAGTAGTG +GTAACAGCAAYAGCAGCGATAGTTTGTTTGAAGAAATGCAAAACTGCTCCTACAACACGA +CCACAGAACTAAGAGATAAAAAGAAAACTGTATATTCACTTTTTTATAAACTTGATATAG +TACCAACTGATAGTAATAGTARTGGGCAGTATAGACTAATAAATTGTAATACATCAGCCA +TGACACAGGCCTGTCCTAAGGTAACTTTTGAGCCAATTCCTATCCATTATTGTACCCCAG +CTGGTTTTGCGATTCTAAAATGCAAGGATATAAATTTTAATGGAACAGGGCCATGCAAGA +ATGTCAGCACAGTACAATGCACACATGGAATCAAACCAGTAGTATCAACTCAACTGCTGT +TAAATGGCAGTCTAGCAGAGAGAAATATAATGATTAGATCTAAAAATATCACAGACAATA +GCAAAATCATAATAGTACAGCTTACTAAGCCTGTAAAAATCACTTGCATCAGACCTGGCA +ACAATACAAGAACAAGTATACGTATAGGACCAGGGCAAACCTTCTATGCAACAGGTGATG +TAGTAGGGAACATAAGAAAAGCATATTGTAATGTCAGCRGAGTAAATTGGARTAACACTT +TACAAAACATAAGCGCACAATTAAGAACATATTTTAATAATAAAACAATAAACTTTAAGA +ACTCCTCAGGAGGGGATTTAGAAATTACAACACATAGTTTCAATTGTGGAGGAGAATTTT +TCTATTGCGATACAACAGACCTGTTCAATAGCACTTGGAATGTTAATGACACTRTCAATA +CCACAGAGGATGATAAAAATATAACTCTGCCATGCAGAATAAAGCAAATCATAAATATGT +GGCAGAGAGTAGGRCAAGCAATGTATGCCCCTCCTATCAGAGGAAGTATAAAGTGTGAAT +CAAACATTACAGGACTACTACTAACAAGAGATGGTGGAAATAAAACTGCKAGCAGCAGTG +AGACCTTCAGACCTATAGGAGGAGATATGAGGGAAAATTGGAGAAGTGAGCTATATAAAT +ATAAAGTAGTAAAAATTGAACCAATAGGAGTAGCACCTACCAGGGCAAAGAGAAGAGTGG +TGGAGAGAGAGAAAAGAGCAATTGGACTGGGAGCTGTCTTTCTTGGGTTCTTAGGAGCAG +CAGGAAGCACTATGGGCGCGGCGTCACTAACGCTGACGGTACAGGCCAGACAATTATTGT +CTGGCATAGTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCTCAGCAGCATCTGC +TGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGAT +ACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTGGAAGACTCATCTGCACCA +CTACTGTGCCCTGGAACTCTAGTTGGAGTAACAAATCTTATAGTGAGATATGGGAGAACA +TGACCTGGATGCAATGGGACAAGGAAGTTAATAATTACACAAGCATAATATATGATCTAA +TTGAACAATCGCAAAACCAGCAGGAAAARAATGAACAAGATTTATTGGCATTGGATAAAT +GGGCAAGTCTGTGGAATTGGTTTGATATATCAAAGTGGTTATGGTATATAAAAATATTTA +TAATAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTACTGTGCTTTCTATAATAA +ATAGAGCCAGGCAGGGATACTCACCCTTGTCATTGCAGACCCCTACCCTGCACCCAGAGG +GACCAGACAGGCCCGGAAGAATCAACGAAGAAGGTGGAAAGCAAGGCAGAGACAGATCAC +TGCGATTAGTGRGCGGATTCTTGGCACTTATCKGGGACGACCTGAGGAGTCTGTGCCTCT +TCAGTTACCACAGCTTGAGAGACTTCATCTCGATTGCAGCGAGGACGGTGGAACTTCTGG +GACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGAGCCTCAAGTATCTGGGGAATC +TCCTGAGATATTGGGGTCAGGAACTAAAGAGTAGTGCTATCAATCTAATAGATACCCTAG +CAATAGCAGTAGCTGGGGGGACAGATAGGGTTATAGMAATAGGACAAAGAKTTTGTAGAG +CCATTCGTAACATACCTAGGAGAATTAGACAGGGCGCAGAAAAGGCTTTGCAATAATATG +GGGGGTAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGGTTAGGGAAAGACTAAGG +CGAGCTCCTGCTCCAGCAGCAAGAGGAGTAGGACCAGTATCTCAAGATTTGGATARGTAT +GGAGCAGTCACAAGCAGTAATACAGCAGCTACGAATGCTGATTGTGCCTGGCTGGAGGCG +CAAGAGGACGAGGAGGTAGGCTTTCCAGTCAGGCCGCAGGTACCTTTGAGACCAATGACA +TATAAGGGAGCTCTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTA +ATTTACTCCAAGAAAAGACAAGAAATCCTTGATCTGTGGGTCTATCACACACAAGGCTAC +TTCCCTGATTGGCAGAATTATACCCCAGGGCCAGGGACTAGATTCCCACTAACCTTTGGG +TGGTGCTACAAGCTAGTGCCCGTTGACCCAGCGGACGTAGAAGAGGCCACAGAGGGAGAG +AATAACAGMCTATTACACCCTATATGCCAACATGGAATGGATGACGAAGAAAGAGAAGTG +TTAAGGTGGAAGTTTGACAGTCGCCTGGCTCTAAAACACAGAGCCCGAGAGCTGCATCCG +GAGTATTACAAAGACTGCTGACACAGACTGCTGACATGAAGTTGCTGACAGGGACTTTCT +GCGGGACTTTCCAGGGGGGGTGTGGTTTGGGTGGAGTTGGGGGAGTGGCTAACCCTCAGA +TGCTGCATATAAGCAGCTGCTTTGCACCTGTACTGGGTCTCTCTGGTTAGACCAGATCG +>A6.RU.2015.0.RU_ERS_551_2015.MT318157 MT318157 +TGCTGAAGTGCACACGGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCACATTTTTTG +ACTAGCAGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAA +ATTAGATGAATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGATTAAA +ACACATAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCGCTTAACCCTGGCCTTTTAGA +AGCAGCGGAAGGATGTCAGCAGATAATGGAACAGTTACAACCATCTCTCAGGACAGGGTC +AGAAGAACTTAAGTCATTATTTAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGAT +AAAAGTAGCAGACACCAAGGAAGCTCTAGATAAAATAGAGGAAATACAAAATAAGAACAA +GCAAAAGACCCAACAGGCAGCAACTGGCACAGGAAGCAGCAGCAAGGTCAGTCAAAATTA +CCCCATAGTGCAGAATGCACAAGGGCAAATGACACACCAGTCCTTATCACCTAGGACTTT +GAATGCATGGGTGAAAGTAATAGAAGAAAAGGCTTTCAGCCCAGAAGTAATACCCATGTT +TACAGCATTGTCAGAGGGAGCCACCCCACAAGATTTAAACATGATGCTGAACATAGTGGG +GGGACACCAGGCAGCTATGCAAATGTTGAAAGATACCATCAATGAGGAAGCTGCTGAATG +GGATAGGGTACATCCAGTACAGGCAGGGCCTTTTCCAGCAGGGCAGATGAGAGAACCAAG +GGGAAGTGATATAGCAGGAACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAG +CAACCCACCTATCCCAGTGGGAGAAATCTATAAAAGATGGATAATCCTAGGATTAAATAA +GATAGTAAGAATGTATAGCCCTGTTAGCATTTTAGACATAAGACAAGGGCCAAAAGAACC +CTTCAGAGACTATGTAGATAGGTTCTTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGA +TGTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCAAATCCAGATTGTAAAAC +CATTTTAAAAGCATTAGGATCAGGGGCTACCTTAGAAGAAATGATGACAGCATGCCAGGG +AGTGGGAGGACCCGGCCATAAAGCAAGGGTTTTGGCCGAGGCAATGAGTCAAGTACAAAA +TGTAAACATAATGATGCAGAAAAGTAATTTTAGGGGCCCAAAAAGAATTAAGTGTTTCAA +CTGTGGCAAAGAAGGACATCTAGCCAGAAATTGCAGGGCCCCTAGGATAAGGAAAAAGGG +CTGTTGGAAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAGAGACAGGCTAA +TTTTTTAGGGAGGATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTCCCTCAGAGCAG +ACCAGAACCATCAGCCCCACCAGCAGAAAACTTTGGGATGGGGGAAAAGATAACCCCCTC +CCTGAAACAGGAACAGGAAGGCAGGGAACAGCATCCTCCTTCAATTTCCCTCAAATCACT +CTTTGGCAACGACCCCTTGTCACAGTAAGAATAGGAGGACAGCTAAAAGAAGCTCTATTA +GATACAGGAGCAGATGATACAGTATTAGAAGAAATAGATTTGCCAGGAAAATGGAAACCA +AAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTAAGACAGTATGAACAGATAACTTTA +GAAATTTGTGGAAAAAAGGCCATAGGTACGGTATTAGTAGGACCTACCCCTGTCAACATA +ATTGGAAGAAATATGTTGACTCAGCTTGGTTGTACTTTAAATTTTCCAATAAGTCCTATT +GAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCA +TTAACAGAAGAGAAAATAAAAGCATTAACAGAAATTTGTAGAGAAATGGAAAAGGAAGGA +AAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAATATTTGCTATAAAGAAA +AAGGACGGAACTAAGTGGAGGAAATTAGTGGATTTCAGGGAGCTCAATAAAAGAACTCAG +GATTTTTGGGAAGTTCAATTAGGAATACCCCATCCAGCGGGTTTAAAAAAGAAAAAATCA +GTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCGTTAGATAAAAACTTCAGA +AAGTATACTGCATTCACTATACCAAGTATAAACAATGAGACCCCAGGGGTCAGATACCAG +TACAATGTACTTCCACAGGGATGGAAAGGGTCACCAGCAATATTTCAGAGTAGCATGACA +AAAATTTTAGAGCCCTTTAGAGAACGAAATCCAGAAATAGTGATCTATCAATACATGGAT +GATTTATACGTAGGATCTGACTTAGAAATAGGGCAGCATAGAGTAAAAATAGAAGAGTTG +AGACAACATTTATTGAAGTGGGGATTCACCACACCAGATAAAAAACATCAGAAAGAACCC +CCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTGCAGCCTATAGAC +CTGCCAGACAAGGAAAGCTGGACTGTCAATGATATACAGAAATTGGTAGGAAAACTAAAT +TGGGCAAGTCAAATTTATCCAGGGATTAAAGTAAAGCAATTATGTAAACTCCTCAGGGGA +GCAAAAGCACTAACAGACATAGTACCGCTAACTGCAGAAGCAGAATTAGAATTGGCAGAG +AACAGAGAAATTTTAAAAGAGCCAGTGCATGGGGTATACTATGACCCATCAAAAGACTTA +ATAGCAGAAATACAGAAACAAGGACAAGACCAATGGACATATCAAATTTATCAAGAGCCA +TTTAAGAATCTAAAAACAGGAAAATATGCAAAAAGGGGATCTGCTCACACTAATGATGTA +AAACAATTAACAGCAGTGGTGCAAAGGGTGGCCACAGAAAGCATAGTAATATGGGGAAAG +ACCCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAGACATGGTGGATGGAATAC +TGGCAGGCCACCTGGATTCCTGAATGGGAATTTGTCAATACCCCCCCTCTAGTAAAACTA +TGGTACCAGTTAGAGAAAGAACCCATACTAGGAGCAGAAACTTTCTATGTAGATGGGGCA +GCTAATAGGGAGACTAAGATAGGAAAAGCAGGGTATGTTACTGACAGAGGAAGACAAAAG +GTTGTTCCTCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATCCATCTAGCT +TTGCAGGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATT +ATTCAAGCACAACCAGACAGCAGTGAATCAGAGATAGTCAATAAAATAATAGAGAAACTA +ATAGAAAAAGATAGAGTCTACCTGTCATGGGTACCAGCGCACAAGGGGATTGGAGGAAAT +GAACAAGTAGACAAATTAGTCAGTAATGGAATCAGAAGAGTGTTATTTTTAGATGGGATA +GATAAGGCTCAAGAAGAACATGAAAAATATCACAGCAATTGGAAAGCAATGGCTAGTGAT +TTTAATCTGCCACCTATTGTAGCAAAGGAAATAGTAGCCAGCTGTGATAAATGTCAACTA +AAAGGGGAAGCTATGCATGGACAGGTAGACTGTAGTCCAGGGATATGGCAAGTAGATTGC +ACACATCTAGAAGGAAAAGTAATTATAGTAGCAGTCCATGTAGCCAGTGGCTATATAGAA +GCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTTCTGCTAAAATTAGCA +GGAAGATGGCCAGTAAAAGTAGTACACACAGATAATGGCCCCAATTTCACCAGCAGTGCA +GTTAAGGCTGCCTGTTGGTGGGCAGATATCCAACAGGAATTTGGGATTCCCTACAATCCC +CAAAGTCAAGGAGTAGTGGAGTCTATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTA +AGAGAGCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTTATTCACAATTTT +AAAAGAAAAGGGGGGATTTGTAGAGAAATGGAAAAGGAAAGAATAATAGACATAATAGCA +ACAGACATACAAACTAAAGAATTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTT +TATTACAGAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGT +GAAGGGGCAGTGGTAATACAGGACAATAATGATATAAAAGTAGTACCAAGAAGAAAAGCA +AAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAG +GATGAGGATTAAAACATGGAACAGTTTAGTAAAGCATCATATGTATGTCTCAAAGAAAGC +TAAAGAGTGGGTCTATAGACATCACTATGAAAGCAGGCATCCAAGAGTAAGTTCAGAAGT +ACACATCCCGCTAGGGGATGCTAGGCTAGTAGTAAAAACTTATTGGGGTCTGCAGACAGG +AGAAAAAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAGAGAAGGTATAG +CACACAAGTAGACCCTGACCTGGCGGACCAACTAATTCATCTGTATTATTTTGACTGTTT +TTCAGAATCTGCCATAAGGAAAGCCATAGTAGGACACGTAGTTAGCCCTAGGTGTAACTA +TCCAACAGGACACAAACAGGTAGGATCTCTACAATACTTGGCACTGAAAGCATTATTAAC +ACCAACAAGGGAAAAGCCACCTTTGCCTAGTGTTAGGAAACTAACAGAGGATAGATGGAA +CAAGCCCCAGAAGACCAAGGGCCGCAGAGGGAACCATACAATGAATGGATGTTAGAACTG +TTAGAAGATCTTAAGGGTGAAGCTGTCAGACATTTTCCAAGGCTGTGGCTTCAAGGATTA +GGACAACATATCTATAACACCTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGA +ACTTTGCAACAACTACTGTTTGTTCATTTCAGAGTTGGGTGCCAGCATAGCAGAATAGGC +ATTGTGCAAAGGAGAAGAGGCAGAAATGGATCCAGTAGATCCTAACCTAGAGCCCTGGAA +TCATCCAGGAAGTCAGCCTAAGACTGCTTGTAACAAGTGTTACTGTAAAAAGTGTTGCTG +GCATTGCCAAATTTGCTTTCTAAAAAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCG +GAGACACAGACGCGGAACTCCTCAAGGCAGTAAGGATCATCAAAATCCTATATCAAAGCA +GTAAGTACTAATGACACCTTTAGAAATCTGGGCAATAGTAGCATTAGTAGTAGTGTTTAT +CATAGCAATAGTTGTGTGGACTATAGTAGGCATAGAATATAGGAGATTGTTAAAACAAAA +GAAAATAGACAGGTTAATTGAGAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAG +CGAGGGGGATGCAGAGGAATTATCAACACTTATGGAGGTGGGGGACCATGTTCCTTTGGT +TGATAATAATGTGTAAGGCTACAGAAAACTTGTGGGTCACGGTATACTATGGGGTACCTG +TGTGGAGAGATGCAGAGACCACCCTATTTTGTGCATCAGATGCTAAAGCATATAGTAAAG +AAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAGCCCACAAGAAA +TGAAATTGGAAAATGTGACAGAAGAATTTAACATGTGGAAAAATAACATGGTAGAACAAA +TGCAAACAGATATAATCAGTCTCTGGGACCAAAGCCTAAAGCCATGTGTAAAGTTAACCC +CTCTCTGCGTTACTTTAAATTGTACTGACTTCAGAAACAGTAGCGGTGAAATGAAAAACT +GCTCTTTCAACATGACCACAGAACTAAGAGATAAAAGGAAAATTGTACACTCACTTTTTT +ATAAACTTGATATAGTATCAATAGATAATACTAATAATAGTCAGTATAGACTAATAAATT +GTAATACATCAACCGTGACACAGGCTTGTCCTAAGGTATCCTTTGAGCCAATTCCTATAC +ATTATTGTACCCCAGCTGGTTTTGCGATTCTAAAGTGCAATGAAAAAAATTTTAATGGAA +CAGGGCCATGCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAGGCCAGTAGTAT +CAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAATGATTAGGTCTGAAA +ATATTACAGACAATGGAAAAATCATAATAGTACAGCTTAATGAGTCTGTAGGCATCAATT +GTATCAGACCTGGCAACAATACAAGAAGAAGTATACGTATAGGACCAGGGCAAGCTTTCT +ATGCAACAGGGGATGTAATAGGGGACATAAGAAAAGCATATTGTGAGGTTAACAAAACAG +CATGGAATAGCGCTTTACGAAAGATAAGTATGCAATTAAAAAATTACTTTAATAATAAAA +CAATAATCTTTAAGGAATCCTCAGGAGGGGATTTAGAAGTTACAACACATAGTTTCAACT +GTGGAGGAGAATTTTTCTATTGCTATACAACAGCCCTGTTCAATAGCACTTGGGACGGAA +ATGAAACTGACACTGGTACAAATAGCACACAGAACAATGAAACTATAACTCTACAATGCA +AAATAAAGCAAATTATAAGAATGTGGCAGAGAGTAGGACAAGCAATGTATGCCCCTCCTA +TCCCAGGAAATATAAATTGTACATCAAACATTACAGGACTACTACTAACAAGAGATGGTG +GAAGTAATAGCACCAATGAGACTTTCAGACCTATAGGAGGAGATATGAGGGACAATTGGA +GAAGTGAACTATATAAGTATAAAGTAGTACAAATTGAACCAATAGGCATAGCACCTACCA +AGGCAAAGAGAAGGGTGGTGGAGAGAGAAAAAAGAGCAATTGGAATAGGAGCTGCCTTCA +TTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTAC +AGGCCAGACAATTATTGTCTGGCATAGTGCAACAGCAAAGCAATTTGCTGATGGCTATAG +AGGCTCAGCAGCATCTGCTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAG +TCCTGGCTGTGGAAAGGTACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTG +GAAGACTCATCTGCACCACCAATGTGCCCTGGAACTCTAGTTGGAGTAATAAAACTTATG +ATGAGATATGGGATAACATGACCTGGATGCAATGGGACAAGGAAATTATCAATTACACAA +ACAAAATATATGATCTAATTGAACAATCGCAAAAACAGCAGGAAAAGAATGAACAAGATT +TATTATCATTGGATAAGTGGACAAGCCTGTGGAGTTGGTTTAACATAACAAATTGGTTAT +GGTATATAAAAATATTTATAATAATAGTAGGAGGCTTAATAGGCCTAAGAATAGTTTTTG +CTGTGCTTTCTATAATAAATAGAGCCAGGCAGGGATACTCACCCTTGTCGTTGCAGACCC +TTATCCCACACCCAGAGGGACCAGACAGGCCCAGAGGAATCGAAGAAGAAGGTGGAGAGC +AAGGCAGAACCAGATCGATTCGCTTAGTGAGCGGATTCTTAACACTTGTCTGGGACGACC +TGAGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTCATCTCGATTGCAGCGA +GGACTGTGGAACTTCTGGGACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGGGCC +TCAAATATCTGGGGAATCTTCTGGAATATTGGGGTCAGGAGCTAAAGAGTAGTGCTATTA +ATCTGATAGATAGACTAGCAATAGCAGTAGCTGAGTGGACAGATAGGGTTTTAGAAATAG +TACAAAGATTTGGTAGAGCTATTCGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAA +AGGCTTTGCAATAACATGGGGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGACTCAG +ATTAGGGAAAGAATGAGACGAGCTCCTGCTCCAGCAGCAAGAGGAGTAGGTCCAGTATCT +CAAGATTTGGATAAGCATGGAGCAGTCACAAGCAGTAACACAGCAGCAACTAATGCTGAT +TGTGCCTGGCTGGAGGCGCAAGAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCGCAGGTA +CCTTTGAGACCGATGACATTTAAGGGAGCTGTTGATCTCAGCCACTTTTTAAAAGAAAAG +GGGGGACTGGATGGGCTAATTTACTCCAAGAAAAGACAAGAAATCCTTGATCTGTGGGTC +TATCACACACAAGGCTACTTCCCTGATTGGCAGAATTATACCCCAGGGCCAGGGACTAGA +TTCCCACTAACATTTGGGTGGTGCTACAAGCTAGTACCAGTTGACCCAGCTGATGTAGAA +GAGGCCACAGAGGGAGAGAACAACAGCCTACTACATCCTATATGCCAACACGGAATGGAG +GATGAAGAAAGAGAAGTGTTAATGTGGAAGTTTGACAGTCGCCTGGCTCTAACACACAGA +GCCCGAGAGCTGCATCCGGAGTTCTACAAAGACTGCTGACACAGACTGCTGACATGAAGT +TGCTGACAGGGACTTTCCGCAGGGACTTTCCAGGGGGGTGTGGTTTGGGCGGAGTTGGGG +AGTGGCTAACCCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTC +TGGTTAGACCAGATCG +>A6.UA.2012.0.DEMA112UA040.KY658682 KY658682 +CCGTCGGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGGCGGTGTAAAA +ATCTCTAGCAGTGGCGCCCGAACAGGGACCCGAAAGCGAAAGTTCCAGAGAAGTTCTCTC +GACGCAGGACTCGGCTTGCTGAAGTGCGCACAGCAAGAGGCGAGAGCGGCGACTGGTGAG +TACGCCTAAAGATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCA +GTATTAAGCGGGGGAAAATTAGATAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAG +AAACAATATAGAATAAAACACCTAGTATGGGCAAGCAGGGAGCTGGACAGATTCGCGCTT +AACCCTAGCCTTTTAGAAACATCAGAAGGATGTCAACAAATACTAGAAAAACTCCAACCA +GCTCTCAATACAGGAACAGAAGAGATTAAATCATTATATAATACAGTAGCAACCCTCTAT +TGTGTACATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGATAAAATAGAGGAA +ATACAAAATAAGAGCAAGCAAAAGACCCAACAGGCAGCAGCTGGCGCAGGAAGCAGCAGT +AAGGTCAGTCAAAATTACCCCATAGTGCAAAATGCACAAGGGCAAATGGTACACCAGTCC +ATTTCACCTAGGACTTTGAATGCATGGGTGAAAGTAATAGAAGAAAAGGCTTTCAGCCCA +GAAGTAATACCCATGTTTTCAGCATTGTCAGAAGGAGCCACCCCACAAGATTTAAACATG +ATGCTGAACATAGTGGGGGGACACCAAGCAGCTATGCAAATGTTAAAAGATACCATCAAT +GAGGAAGCTGCTGAATGGGATAGGTTACATCCAGCACAGGCAGGGCCTTTTCCAGCAGGG +CAGATGAGAGAACCTAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAACAA +ATAGGATGGATGACAAGTAACCCACCTATCCCAGTGGGAGACATCTATAAAAGATGGATA +ATCCTAGGATTAAATAAGATAGTAAGAATGTATAGCCCTACTAGCATCTTAGACATCAGA +CAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTCTTTAAAACTCTTAGAGCT +GAGCAAGCTACACAGGAGGTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCC +AATCCAGATTGTAAAACCATTTTAAGAGCATTAGGACCAGGGGCTACATTAGAAGAAATG +ATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAAGCAAGGGTTTTGGCTGAGGCA +ATGAGTCAAGTACAAAATACAAGCATAATGATGCAAAAAAGTAATTTTAGAGGCCCAAAA +AGAATTAAGTGTTTCAACTGTGGTAAAGAAGGACACCTAGCCAGAAATTGCAGGGCCCCT +AGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAG +AGACAGGCTAATTTTTTAGGGAGAATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTT +CCTCAGAGCAGACCAGAGCCATCAGCCCCACCAGCAGAGGAGTTTGGGATGGGGGAAGAG +ATGACCCCCTCCCTGAGACAGGAACAGAGAGACAGGGAACAACATCCTCCTTCAATTTCC +CTCAAATCACTCTTTGGCAACGACCCATTGTCACAGTAAGAATAGAAGGACAGCTAAAAG +AAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGGAA +AATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTAAGACAGTATGATC +AAATAGTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTATTAGTAGGACCTACCC +CTGTCAACATAATTGGAAGAAATATGTTGACTCAGATTGGTTGTACTTTAAATTTTCCAA +TAAGTCCTATTGAAACTGTACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAAGTTA +AACAATGGCCATTATCAGAAGAGAAAATAAAAGCATTAACAGACATTTGTAATGAAATGG +AAAAAGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTG +CTATAAGGAAAAAGGACAGCACTAAGTGGAGAAAATTAGTAGATTTCAGGGAGCTCAATA +AAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCCCATCCAGCGGGCTTAAAAA +AGAAAAAATCAGTAACAGTACTAGATGTAGGGGATGCATATTTTTCAGTTCCTTTAGATG +AAAATTTCAGAAAGTATACTGCATTCACTATACCAAGTATAAACAATGAGACACCAGGGA +TCAGATATCAGTACAATGTGCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAGT +GTAGCATGACAAAAATCTTAGAGCCCTTTAGATTAAAAAATCCAGAAATAGTTATCTATC +AATACATGGATGACTTGTATGTAGGCTCTGATTTAGAAATAGGGCAACATAGAACAAAAA +TAGAGGAGTTGAGAGCTCATCTATTGAGTTGGGGATTTACTACACCAGACAAAAAGCATC +AGAAAGAACCCCCATTCCTGTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTTC +AGCCTATAGTGCTGCCAGATAAAGACAGCTGGACTGTCAATGACATACAGAAACTAGTGG +GAAAATTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAGTAAGGCAATTGTGTAAAC +TCCTCAGGGGAGCCAAAGCACTGACAGATATAGTGACACTGACAGCGGAAGCAGAATTAG +AATTGGCAGAGAACAGAGAGATTCTAAAAGAACCGGTGCATGGAGTATATTATGATCCAT +CAAAAGATTTAGTAGCAGACATACAGAAACAAGGACAAGGTCAATGGACATATCAAATCT +ATCAGGAGCCATTTAAGAATCTAAAAACAGGAAAATATGCAAAAAAGGGGTCTGCTCATA +CTAATGATGTAAGACAATTAACAGCAGTGGTGCAAAAAGTGGCCACAGAAAGTATAGTAA +TATGGGGAAAGACTCCTAAATTTAAACTACCCATACAAAAAGAAACATGGGAAGCATGGT +GGATGGAGTACTGGCAGGCCACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTC +TAGTAAAACTATGGTACCAGTTGGAGAAAGAACCCATAGTAGGAGCAGAGACTTTCTATG +TAGATGGGGCAGCTAATAGGGAGACTAAAATAGGAAAAGCAGGGTATGTTACTGACAGAG +GAAGACAAAAGGTTGTTCCTCTAAATGAGACAACAAATCAAAAGACTGAATTACATGCAA +TCTATCTAGCTTTACAGGATTCAGGATTAGAAGTAAATATAGTAACAGACTCACAATATG +CATTAGGAATTATTCAGGCACAACCAGACAGAAGTGAATCAGAGATAGTTAATCAAATAA +TAGAGAAGCTAATAGAAAAAGAAAGAGTCTACCTGTCATGGGTACCAGCACACAAAGGGA +TTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAGGGTGTTATTTC +TAGAAGGGATAGATAAGGCTCAAGAAGATCATGAAAAATATCACAGCAATTGGAAAGCAA +TGGCTAGTGATTTTAATCTGCCACCTATAGTAGCAAAGGAAATAGTAGCCAGCTGTGATA +AATGTCAACTAAAAGGGGAAGCTATGCATGGACAGGTAGACTGTAGTCCAGGAATATGGC +AATTAGATTGCACACATCTAGAGGGAAAAGTAATCATAGTAGCAGTCCATGTAGCCAGTG +GCTATATAGAAGCAGAGGTTATCCCAGCAGAAACAGGACAGGAGACAGCATATTTTCTGC +TAAAATTAGCAGGCAGATGGCCAGTAAAAGTAGTACACACAGATAATGGCCCCAATTTCA +CCAGCAGCGCAGTTAAGGCTGCCTGTTGGTGGGCAGATATCCAACAGGAATTTGGGATTC +CCTACAATCCCCAAAGTCAAGGAGTAGTGGAGTCTATGAATAAGGAATTAAAGAAAATCA +TAGGGCAGGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAGTTCAAATGGCAGTATTCA +TTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAG +ACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAA +ATTTTCGGGTTTATTACAGAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTAC +TCTGGAAAGGTGAAGGGGCAGTGGTAATACAGGACAATAACGATATAAAAGTAGTACCAA +GAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGG +CAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCACATGTATGTC +TCAAAGAAAGCTAGAAAGTGGTTTTATAGACATCATTATGAAAGCAGGCATCCAAAAGTA +AGTTCAGAAGTACACATCCCACTAGGGGATGCTTGTCTAGTAGTAACAACATATTGGGGT +CTGCATACAGGAGAAAAAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAA +AGAAGGTATAGCACACAAATAGACCCTGACCTGGCGGACCAACTAATTCATCTGTATTAT +TTTGAATGTTTTTCAGAATCTGCCATAAGGGGAGCCATATTAGGACAAATAGTTAGCCCT +AGGTGTAACTACTCAGCAGGACACAACAAGGTAGGATCTCTACAATACTTGGCACTGAAA +GCATTAGTTACACCAACAAGGGAAAGGCCACCTTTGCCTAGTGTTAGGAAACTAACAGAG +GATAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAACCATACAATGAATGGA +TGTTAGAACTGTTAGAAGATATTAAGCATGAAGCTGTCAGACATTTTCCAAGGCCGTGGC +TTCATGGATTAGGACAACATATCTATAACACCTATGGGGATACTTGGGAAGGGGTTGAAG +CCATAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGCCAACATA +GCAGAATAGGCATTGTGCAAAGGAGAAGAGGCAGGAATGGATCCAGTAGATCCTAACCTA +GAGCCCTGGAAGCACCCGGGAAGCCAGCCTAAAACTGCTTGTAGCAATTGTTACTGTAAA +AGATGTTGCTGGCATTGCCAAATTTGCTTTCTAAAAAAAGGCTTAGGCATTTCCTATGGC +AGGAAGAAGCGGAGACACAGACGCGGAACTCCTCACGGCAGTAAGGATCATCAAAATCCT +ATATCAAAGCAGTAAGTACTAAATGTAATGACACCTTTAGAAATCTATGCAATAATAGCA +TTAGTAGTAGTATTTGTTATAGCAATAGTTGTGTGGACTATAGTAGGCTTAGAATATAGG +AAATTACTAAAACAAAGAAAAATAAACAGGTTAATTGAAAGAATAAGAGAAAGAGCAGAA +GACAGTGGCAATGAAAGCGAGGGGGATGCAGAGGAATTATCAACACTTATGGAGGTGGGG +GACTATGCTCTTTTGGATGATAATAATGTGTAAGGCTGCAAACTTGTGGGTCACAGTATA +CTATGGGGTACCTGTGTGGAGAGATGCAGAGACCACCCTATTTTGTGCCTCAGATGCCAA +GGCTTATGATAAAGAAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCC +TAACCCACAAGAAATAATTTTAGAAAATGTGACAGAAAATTTTAATATGTGGAAAAATAA +CATGGTAGAACAAATGCACACAGATATAATCAGTCTCTGGGACCAAAGTCTAAAGCCATG +TGTACAACTAACCCCTCTCTGTGTTACTTTAAATTGTACTGAACCCACTATCGACAGTAA +CAATAACAGCACTAACACCAGCTAYAATAGAAAGATTGAAGAAATGAGAAACTGCTCTTT +CAACATAACCACAGAACTAAATGATAAACAGAAAAAAGTACATTCACTTTTTTATAAACT +TGATATAGTACCAACTGATAATGGTAGTAGTCAGTATAGACTAATAAATTGTAATACATC +AACCATGACACAGGCCTGTCCTAAGGTATCCTTTGAGCCAATTCCTATATATTATTGTAC +CCCAGCTGGTTTTGCGATTATAAAATGCAATGATGCAAATTTTACAGGAATAGGGCCATG +CAGGAATGTCAGCACAGTACAATGTACACATGGAATCAAGCCAGTAGTATCAACTCAATT +GCTGTTAAATGGTAGTCTAGCTGAGAAAGAGATAATGATTAGATCTGAGAATATCACAGA +CAATACTAAAAACATAATAGTACAGCTTACTAAGGCTGTAAACATCACTTGCTCCAGACC +TGGCAACAATACAAGAACAAGTATACCTATAGGACCAGGACGAGCCTGGTTTGCAACAGG +TGATGTAACAGGGGATCCAAGGAAAGCACATTGTAATGTCAGCAAAGCAGATTGGACTAG +CACTTTAAAAAATATAAGTATACAATTAAGAAAACACTTTAACAAAACAATAATCTTTCA +GAATTCCTCAGGAGGGGATTTAGAAGTTACAACACATAGTTTCAATTGTGGGGGAGAATT +TTTCTATTGCAATACAACAGAACTGTTCAATAGCACTTGGAATGGCACTGACACAAACAG +CACAGAGGACAATAATGTAAATATAACTATACCATGCAGAATAAAGCAAATTATAAATAT +GTGGCAGAGAGTAGGACGAGCAATGTATGCCCCTCCTATCAGAGGAAATATAACTTGTGA +ATCAAACATTACAGGACTACTACTAACAAGAGATGGTGGTAAAGAGAAAAATGACAACGA +AACCTTTAGACCTATAGGAGGAAATATGAAGGACAATTGGAGAAGTGAACTATATAAGTA +TAAAGTAGTAGAAATTAACCCAATAGGAGTAGCACCTACCCCGGCAAAGAGAAGAGTGGT +GGAGAGAGAAAAAAGAGCAGTTAGCCTAGGAGTTGCCTTCCTTGGGTTCTTAGGAGCAGC +AGGAAGTACTATGGGCGCGGCGTCACTGACGCTGACGGTACAGGCCAGACAACTATTGTC +TGGCATAGTACAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCTCAGCAGCAATTGCT +GAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATA +CCTAAGAGATCAGCAACTCCTAGGAATTTGGGGTTGCTCTGGAAAACTCATCTGCACCAC +TACTGTGCCCTGGAACTCTAGTTGGAGTAATAGATCTCAGGATGATATATGGAATAACAT +GACCTGGATGCAATGGGACAGGGAAGTTAGCAATTACACAGAATTAATATATAAGCTAAT +TGAAGAATCGCAAAACCAGCAGGAAAAGAATGAACAAGATTTATTGGCATTGGATGAGTG +GGCAAGTCTGTGGAATTGGTTTAAAATAACACAGTGGTTATGGTATATAAAAATATTTAT +AATGATAGTAGGAGGCTTAATAGGATTAAGGATAGTTTTTGCTGTGCTTTCTATAGTAAA +TAGAGTCAGGCAGGGATACTCACCCTTGTCATTGCAGACCCCAAACCCACACCCAGAGGG +ACCAGACAGGCCCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGGCAGAGACAGATCGAT +TCGATTAGTGAGCGGATTCTTAGCACTTGTCTGGGACGACCTGCGGAGCCTGTGTCTTTT +CAGCTACCACCGATTGAGAGACTTCATCTTGATTGCAACGAGGACTGTGGAACTTCTGGG +ACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGGGCCTCAAATATCTGGGGAATCT +TCTGGGATATTGGGGTCAGGAGCTAAAGAGTAGTGCTATAAGTCTGATAGATACCATAGC +AATAGTAGTAGCTGGGTGGACAGATAGGGTTTTAGAACTAGGACAGAGAATTTGTAGAGC +TATTTGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAAGAGCTTTGCAATAACATGG +GGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGATTAGGGACAGAATAAGAC +GAACTCCTGCTCCAGCAGCACCAGGAGTAGGACCAGTATCTCAAGATTTGGATAAGCATG +GAGCAGTCACAAGCAGTAATACAGCAGCTACTAATGCTGATTGCGCATGGCTGGAAGCGC +AAGAGGAAGAGGAGGTAGGCTTTCCAGTCAGGCCGCAGGTACCTTTGAGACCAATGACAT +ATAAGGGAGCTTTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAA +TTTACTCCCAGAAAAGAAGAGAAATCCTTGATCTATGGGTCTATCACACACAAGGCTACT +TCCCTGATTGGCAGAATTACACCCCAGGGCCAGGGATTAGATACCCACTAACATTTGGGT +GGTGCTACAAGCTAGTACCAGTTGACCAAGATGTGGTAGAAGAGGCCACAGTGGGAGAGA +ACAACAGCCTATTACACCCTATATGCCAACATGGAATGGATGATGAAGAGAAAGAAGTGT +TAATGTGGAAGTTTGACAGTCGCCTGGCTCTAAAACACAGAGCCCGAGAGCTGCATCCGG +AGTTCTACACAGACTGCTGACATGAGATTGCTGACAGGGACTTTCCGCGGGGACTTGGGA +CTTTCCAGGGGAGGTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAACCCTCAGATGCTGCA +TATAAGCAGCGGCTTTTCGCCTGTACTGGGTCTCTCTGGTTAGACCAGATTAGAGCCTGG +GAGCTCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTG +CTTGAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCA +CTCTAGGCGGTGTAAAAATCTCTAGC +>A6.RU.2016.0.RU_ERS_1102_2016.MT369982 MT369982 +TGCTGAGGTGCACRCAGCAAGAGGCGAGAGCGGCGGCTGGTGAGTACGCCTGATTTTTGA +CTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAA +TTAGATAAATGGGAAAAAATACGGTTAAGGCCAGGGGGAAGGAAACAATATAGAATAAAA +CACCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTTGCGATTAACCCTGGCCTTTTAGAA +ACAGCAGAAGGATGTCAACAAATACTAGAACAGTTACAACCAAGTATCAAGACAGGATCA +GAAGAAATTAAATCATTATATAATACAGTAGCAACCCTCTATTGTGTACATCAAAGGATA +GAAATAAAAGACACCAAGGAAGCTTTAGATACAATAGAGGAATTGCAAAATAAGAACAAG +CAAAAGACCCAACAGGCAGAGGCTGGCACAGGAAGCAGCAGCAAGGTCAGTCACAATTAC +CCCATAGTGCAAAATGCACAAGGGCAAATGATGCACCAGGCCATGTCACCTAGGACTTTR +AATGCATGGGTAAAAGTAATAGAAGAAAAGGCTTTTAGCCCAGAAGTAATACCCATGTTC +TCAGCATTATCAGAGGGAGCCACCCCACAAGATTTAAACATGATGCTGAACATAGTGGGG +GGACATCAGGCAGCTATGCAAATGTTAAAAGATACCATCAATGAGGAAGCTGCTGAATGG +GATAGGTTACATCCAGCACAAGCAGGGCCTTTTCCACCAGGGCAAATGAGAGAACCAAGG +GGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAGCAAATAGGATGGATGACAAGC +AACCCACCTATTCCAGTGGGAGACATCTATAAAAGATGGATAATCCTGGGATTAAATAAA +ATAGTAAGAATGTATAGCCCTGTTAGCATTTTAGACATAAGACAAGGGCCAAAAGAACCC +TTCAGAGACTATGTAGATAGGTTCTTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGAG +GTAAAGAACTGGATGACAGAAACCCTGCTGGTCCAAAATGCAAATCCAGATTGTAAAAAT +ATTTTAAGAGCATTAGGACCAGGGGCTACATTAGAAGAAATGATGACAGCATGCCAGGGA +GTGGGAGGACCCGGCCATAAAGCAAGGGTTTTGGCYGAGGCAATGAGTCAAGTACAARGT +GCAAATATAATGATGCAGAAAAGTAATTTTAGGGGCCCAAAAAGAATTAAGTGTTTCAAC +TGTGGCAAAGAAGGACACCTAGCTAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGG +AAATGTGGAAAGGAAGGCCATCAAATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTA +GGGAGAATTTGGCCTTCCAGCAAAGGGAGGCCAGGAAATTTTCCTCAGAGCAGACCAGTA +CCATCAGCCCCACCAGCAGAAGACTTCGGGATAGGGGAAGAGATAACCCCCTCCCTGAAA +CAGGAACAGAAAGACAGGGAACAGTGTCCTCCTTCAGTTTCCCTCAAATCACTCTTTGGC +AACGACCCMTTGTCACAGTAAGAATAGGAGGACAGCTAAAAGAAGCTCTATTAGATACAG +GAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGGAAAATGGAAGCCAAAAATGA +TAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGGTACTTATAGAAATTT +GTGGAAAAAAGGCTATAGGTACGGTATTAATAGGACCTACCCCTGTCAACATAATTGGAA +GAAATATGTTGACTCAGATTGGTTGTACTTTAAATYTKCCAATAAGTCCTATTGAAACTG +TACCAGTAACATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTATCAG +AAGAAAAAATAAAAGCATTAATAGACATTTGTAGTGAGATGGAAAAGGAAGGAAAAATTT +CAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGTTATAAAGAAAAAAGATA +GCACTAAGTGGAGGAAATTAGTAGATTTCAGGGAGCTCAATAAAAGAACTCAGGACTTTT +GGGAAATTCAATTAGGAATACCCCATCCAGCGGGTTTAAAAAAGAAAAAATCAGTAACAG +TACTGGATGTAGGGGATGCATATTTTTCAGTTCCTTTAGATGAAAACTTCAGAAAGTATA +CTGCATTCACTATACCAAGTACAAACAATGAGACACCAGGGATCAGATATCAGTACAATG +TACTCCCACAGGGATGGAAAGGATCACCATCAATATTCCAGGCTAGCATGACAAAAATCT +TAGAGCCCTTTAGATTAAAAAATCCAAACATAGTTATCTATCAATACATGGATGACTTGT +ATGTAGGCTCTGATTTAGAAATAGGTCAGCATAGGACAAAAATAGAGGAGTTAAGAGCTC +ATCTATTGAGCTGGGGATTTACTACACCAGACAAAAAGCATCAGAAAGAACCTCCATTTC +TTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAGCCTATAGTGCTACCAG +ATAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTAGGAAAACTAAATTGGGCAA +GTCAGATTTATCCAGGGATTAAAGTAAARCAATTATGTAAACTCCTCAGGGGAGCCAAAG +CACTGACAGATATAGTGACACTGACTAAGGAAGCAGAATTAGAATTGGAAGAGAACAGAG +AGATTCTAAAAGAACCTGTGCATGGAGTATATTATGATCCATCAAAAGATTTAGTAGCAG +AAATACAGAAACAAGGARAAGACCAATGGACATATCAAATTTATCAGGAGCCATTTAAAA +ATCTGAAAACAGGAAAATATGCAAAAAAGGGGTCTGCTCACACKAATGATGTAAAACAAT +TGACAGCAGTGGTGCAAAAAGTGGCCACAGAAAGCATAGTAATATGGGGAAAGACTCCTA +AATTTAGATTACCCATACAAAAAGAAACATGGGAAGCATGGTGGATGGAGTACTGGCAGG +CTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTCTAGTAAAGCTATGGTACC +AGTTGGAGAAAGAACCCATAATAGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTAACA +GGGAGACTAAGATAGGAAAAGCAGGGTATGTTACTGACAGAGGAAGACAAAAGGTTGTTC +CTCTAACTGAGACAACAAATCAAAAGACTGAATTACATGCAATCYATCTAGCTTTGCAGG +ATTCAGGACCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATTATTCAGG +CACAACCAGACAGAAGTGAGTCAGAGATAGTCAATAAAATAATAGAGAAACTAATAGAAA +AAGAAAGAGTCTACCTGTCATGGGTACCAGCRCACAAGGGGATTGGAGGAAATGAACAAG +TAGATAAATTAGTCAGTAATGGAATCAGGAGGGTGTTATTTTTAGAAGGGATAGACAAGG +CTCAAGAAGAACATGAAAAATATCACAGCAATTGGAAAGCAATGGCTAGTGATTTCAATC +TGCCACCTGTAGTAGCAAAGGAGATAGTAGCCAGCTGTGATAAATGCCAATTAAAAGGAG +AAGCTATGCATGGACAGGTAGACTGTAGTCCAGGGATATGGCAATTAGATTGCACACATC +TAGAAGGAAAAGTAATCATAGTAGCAGTCCATGTAGCCAGTGGCTATATAGAAGCAGAAG +TTATTCCAGCAGAAACAGGACAGGAGACAGCATACTTCCTGCTAAAACTAGCAGGAAGAT +GGCCAGTGAAARTAGTACACACAGATAATGGCCCAAATTTCACCAGCAGTGCAGTTAAGG +CTGCCTGTTGGTGGGCAAATATCCAACAGGAATTTGGAATTCCCTACAATCCCCAAAGTC +AAGGAGTAGTGGARTCTATGAATAAGGAATTAAAGAAAATCATAGGGCAAGTAAGAGAGC +AAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAA +AAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGRATAATAGACATAATAGCAACAGACA +TACAGACCAAAGAATTACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACA +GAGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGG +CAGTGGTAATACAGGACAATAACGATATAAAAGTAATACCAAGAAGAAAGGCAAAGATCA +TTAGGGATTATGGAAAACAGATGGCAGGGGATGATTGTGTGGCAAGTAGACAGGATGAGG +ATTAGAACATGGAATAGTATAGTAAAACATCATATGTATATCTCAAAGAAAGCTAGAGGG +TGGGTTTATAGACATCACTATGAAAGCAGAAATCCAAGAGTAAGTTCAGAAGTACACATC +CCACTAGGGGATGCTAGGCTAGTAGTAAAAACATATTGGGGTCTGCATACAGGAGAAGAA +GACTGGCACTTGGGTCACGGGGTCTCCATAGAATGGAGACAGGAAAGGTATAGCACACAA +GTAGACCCTGACCTGGCGGACCAACTAATTCATCTGTATTATTTTGACTGTTTTTCAGAA +TCTGCCATAAGGAARGCCATAGTAGGACACGTAGTTAGCCCTAGGTGTAACTATCCATCA +GGACACAACAAGGTAGGATCTCTACAATACTTGGCACTGAAAGCAATAGTACCACAAACA +AGGGAAAGGCCACCTTTGCCTAGTGTTAGGAAACTAACAGAGGATAGATGGAACAAGCCC +CAGAAGACCAGGGGCCGCAGAGGGAACCATACAATGAATGGATGTTAGAACTGTTAGAAG +ATCTTAAGAATGAAGCTGTCAGACATTTTCCAAGACYGTGGCTCCAKGAWTTAGGACAAC +ACATTTATAACACCTATGGGGATACTTGGACAGGGGTTGAAGCTATAATAAGAAYTTTGC +AACAACTATTGTTTGTTCATTTCAGAATTGGGTGCCAMCATAGCAGAATAGGCATTGTGC +AAAGGAGAAGAGTCAGGAATGGATCCAGTAGATCCTAACCTAGAGCCCTGGRADCATCCG +GGAAGTCAGCCTAAAACTGCTTGTAGCAATTGTTAYTGTAAAAAATGTTGCTGGCATTGT +CAAGTGTGCTTCTTAAAMAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGAAGC +AGACGCGGAACTCCTCRCAGCARTAAGGAYCATCAAAWTMTTATAYCAAAGCAGTAAGTA +CTAAATAAATGTAATGAYACCTTTAGAAATCTATGCAATAGTAGCATTAGTAGTAGTGGC +TATCATAGCAATAGTTGTGTGGACTATAGTAGGTATAGAATATAGGAAATTGTTAAAACA +AAGAAAAATAGACAGGTTAATTGAGAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGA +AAGCGAGGGGGATGAAGAAGAATTATCAACAMTTATGGATAGGGGGAACCTTGCTCTTTT +GGATATTAATAATGTGTAAGGCTACAGAAAACTTGTGGGTCACGGTATACTATGGGGTAC +CTGTGTGGAGAGATGCAGAGACCACCCTATTTTGTGCATCAGATGCTAAAGCATATGATA +AAGAAGTACACAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAACCCACAAG +AAATAGATTTGGAAAATGTGACAGAAAACTTTAACATGTGGAAAAATAACATGGTAGAAC +AAATGCAAACAGATATAATCAGTCTCTGGGACCAAAGCCTAAAGCCATGTGTAARKTTRA +CCCCTCTCTGTGTYACTTTAAATTGTRYKGAACCCAACAGCACCARCTATAACAACAGTA +GCACTAATAGCAGCARCAGTGATAATTTGTATAAAGAAATGAAAAACTGCTCTTTCAACA +TGACCACAGAAGTAAGAGATAAAAGGAAAACTGTATATTCACTTTTTTATAAACTTGATA +TAGTATCAACTGATAGTAATAGTAGTAGTGGACAGTATAGACTAATAAATTGCAATACAT +CAACCATGACACAGGCATGTCCTAAGGTAACCTTTGAGCCAATTCCTATACATTATTGTG +CCCCAGCTGGTTTTGCGATTCTAAAGTGCAAGGATCCAAAATTTAATGGAACAGGGCCAT +GCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGYAGTATCAACTCAAC +TGCTGCTAAATGGCAGTCTAGCAGAGGATGTAATGATTAGATCTGAAAATATCACAGACA +ATAGCAAAATCATAATAGTACAGCTTAATGAGCCTGTAAACATCACTTGTATCAGACCTG +GCAACAATACAAGAACAAGTGTACGTATAGGACCAGGACAAACCTTCTATGCAACAGGTR +AGGTAATAGGGGACATAAGAAAAGCACATTGTGAGGTCAACAAAACAGAATGGAAKAGTG +CTCTAAGMAAGATAAGTACACAATTAAGAAAATATTTTAATAACAAAACAATAGTCTTTC +AGARMTCCTCAGGGGGGGATTTAGAAATTACAACACATAGTTTCAATTGTGGAGGAGAAT +TTTTCTATTGCAATACAACAGCCCTGTTCAATAGCACTTGGGACAAYAATAATGACACTR +TCACAAATGDCACARAKGACAATRAAAATATAACTACTCTGCCATGCAGAATAAAGCAAA +TTATAAAWATGTGGCAGAGAGTAGGACAAGCAATGTATGCCCCTCCTATCCCAGGAAGTA +TAAGGTGTGARTCAAACATTACAGGATTACTACTAAYAAGAGATGGTGGAGATARAAATA +GTAGCAATGAGACCTTCAGACCTATAGGAGGAGACATGAGGGACAATTGGAGAAGTGAAC +TATATAAGTATAAAGTAGTAAAAATTGAACCAATAGGAGTAGCACCTACCAAGGCAAAGA +GAAGAGTGGTGGAGAGAGAAAAAAGAGCAATTGGACTGGGAGCTGCCTTCCTTGGGTTCY +TAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGAC +AATTGTTGTCTGGCATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCTCAGC +AGCATCTGCTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTG +TGGAAACATACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTGGAAAACTCA +TCTGCACCACTAATGTGCCCTGGAACTCTAGTTGGAGTAACAAATCTCTGAATGAGATAT +GGGAHAACATGACCTGGATGCAATGGGACAAGGAAGTTATCAACTACACAGGCATAATAT +ATGATCTAATTGAAAAATCGCAAAACCAGCAGGAAAAGAATGAACAAGAGTTATTGGCAT +TGGATAAGTGGGCAAGTCTGTGGAATTGGTTTGACATATCAAATTGGTTATGGTATATAA +AAATATTTATAATAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTGCTGTGCTTT +CTATAATAAATAGAGTCAGGCAGGGATACTCACCCTTGTCATTGCAGATCCCTACCCCAC +ACCCAGAGGAACCAGACAGGCCCGGAAGAATCAACGAAGAAGGTGGAAAGCAAGGCAGAG +ACAGATCAGTGCGATTAGTGAGCGGATTCTTAGCACTTTTCTGGGACGATCTGAGGAGCC +TGTGCCTCTTCTGCTACCACCTATTGAGAGACTTCATCTTGGTTGTAGCGAGGACGGTGG +AACTTCTGGGACGCAACAGCCTCAAGGGACTGAGACTGGGGTGGGAGGGCCTCAAGTATC +TGGGGAATCTCCTGGAATATTGGGGTCAGGAACTAAAGAGTAGTGCTATCAATCTCATAG +ATACCATAGCAATAGTAGTAGCTGGATGGACAGATAGGGTTMTAGAATTAGGACAAAGAD +TTTGTAGAGCTATTTGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAAGAGCTTTGC +AATAAAATGGGGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGGTAAGGGAA +AGAATAAGACGAGCTCCTGCTCCAGCAGCAATAGGAGTAGGACCAGTATCACAGGATTTA +GATAAGCATGGAGCAGTTACAAGCAGTAATACAGCAGCTACTAATGCTGATTGTGCCTGG +CTGGARGCACAAGAGGACGAGGAAGTAGGCTTTCCAGTCAGGCCACAGGTACCTYTGAGA +CCAATGACATATAAGGGAGCATTCGATCTCAGCCACTTTTTAAAAGAAAAGGGGGGACTG +GATGGGCTAATTTACTCCAAGAAAAGACAAGAAATCCTTGATCTGTGGGTCTATCACACA +CAAGGCTACTTCCCTGATTGGCAGAATTATACCCCAGGGCCAGGGATTAGATACCCACTA +ACCTTTGGGTGGTGCTACAAGCTAGTACCCGTTGACCCAGAGGWAGTAGAAGAGRCCACA +GAGGGAGAGAACAACAGCCTATTACACCCTATATGCCAACACGGAATGGATGATGAGGAA +AGAGAAGTGTTAATGTGGAAGTTTGACAGTCACCTGGCTCTAACACACARAGCCCGAGAG +MTACATCCGGAGTACTACAAAGACTGCTGACACAGACTGCTGACATGAAGTTGCTGACAG +GGACTTTCTACGGGACTTTCCGGGGAGGTGTGGTTTGGGCGGAGTTGGGGAGTGGCTAAC +CCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTCTGGTTGGACC +AGATCG +>A6.RU.2006.0.RU_915_1035.JQ292897 JQ292897 +CTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCA +CTCTAGGCGGTGTAAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGT +TCCAGAGAAGTTCTCTCGACGCAGGGCTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGA +GAGCGGCGACTGGTGAGTACGCCTAAAGATTTTTGACTAGCGGAGGCTAGAAGGAGAGAG +ATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCATGGGAAAAAATTCGG +TTAAGGCCAGGGGGAAGGAAAAAATATAGAATAAAACACCTAGTATGGGCAAGCAGGGAG +TTGGAAAGATTCGCGCTTAACCCCAGCCTTTTAGAAACATCAGAAGGATGTCAACAACTA +CTGGAACAGTTACAATCAACTCTCAAGACAGGATCAGAAGAACTTAAATCATTATATAAT +ACAATAGCAACCCTCTATTGTGTACATCAACGGATAGAGATAAAAGACACCAAGGAAGCT +TTAGATAAAATAGAGGAAATACAAAATAAGAGCAGGCAAAAGACCCAACAGGCAGCAACT +GGCACAGGAAGCAGCAGCAAGGTCAGTCAAAATTACCCCATAGTGCAAAATGCACAAGGG +CAAATGGTACACCAGTCCATATCACCTAGGACTTTGAATGCATGGGTGAAAGTAATAGAA +GAAAAAGCTTTYAGCCCAGAAGTAATACCCATGTTTTCAGCATTGTCAGAGGGAGCCACC +CCACAAGATTTAAACATGATGCTGAACATAGTGGGGGGACACCAGGCAGCTATGCAAATG +TTGAAAGATACCATCAATGAGGAAGCTGCTGAATGGGATAGGTTACATCCAGCACAGGCA +GGGCCTTTTCCACCAGGGCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACT +AGTACCCTTCAAGAACAAATAGGATGGATGACAAGCAACCCACCTATCCCAGTGGGAGAC +ATCTATAAAAGATGGATAATCCTAGGATTAAATAAGATAGTAAGAATGTATAGCCCTGTT +AGCATTTTAGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTC +TTTAAAACTCTTAGAGCTGAGCAAGCTACACAGGATGTAAAGAACTGGATGACAGATACC +CTGCTGGTCCAAAATGCAAATCCAGATTGTAAAACCATTTTAAGAGCATTAGGACCAGGG +GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCGGCCATAAAGCA +AGGGTTTTGGCCGAGGCAATGAGTCAAGTACAAAATGCAAACATAATGATGCAGAAAAGT +AATTTTAGAGGCCCAAAAAGAATTAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCC +AGAAAYTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGCCATCAA +ATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAG +GGGAGGCCAGGAAATTTTCCTCAGAGCAGACCAGAACCATCAGCCCCACCAGMAGAGARC +TTTGGGATGGGGGAAGAGATAACCCCCTCCCTGAAACAGGAACAGAGAGACAGGGAACAG +CATCCTCCTTCAATTTCCCTCAAATCACTCTTTGGCAACGACCCATTGTCACAATAAGAA +TAGGAGGACAGCTAAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAG +ACATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCA +AGGTAAGACAATATGATCAGATACCCATAGAAATTTGTGGAAAAAAGGCTATAGGTACAG +TATTAGTAGGACCTACCCCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGTT +GTACTTTAAATTTTCCAATAAGTCCTATTGAAACTGTACCAGTARCATTAAAGCCAGGAA +TGGATGGCCCAAAGGTTAAACAATGGCCATTAACAGAAGAGAAAATAAAAGCATTAACAG +AAATTTGTAGGGAAATGGAAAAGGAAGGAAAAATTTCGAAAATTGGGCCTGAAAATCCAT +ACAATACTCCAGTATTTGCGATAAAGAAAAAGGACAGCACTAAGTGGAGGAAATTAGTAG +ACTTCAGGGAGCTCAATAAAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCCC +ATCCAGCGGGTTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATT +TTTCAGTTCCTTTAGATGAAAGCTTCAGAAAGTATACTGCATTCACTATACCAAGTATAA +ACAATGAAACACCAGGGATCAGATACCAGTACAATGTACTTCCACAGGGATGGAAAGGAT +CACCAGCAATATTTCAGGCTAGCATGACAAAAATCTTAGAGCCCTTTAGATCAAAAAATC +CCGAAATAGTTATCTATCAATACATGGATGACTTGTATGTAGGCTCTGATTTAAAAATAG +GGCAACATAGAACAAAAATAGAGGAGTTAAGAGCTCATCTATTGAGCTGGGGATTTACTA +CACCAGACAAAAAGCATCAGAAAGAACCTCCATTTCTTTGGATGGGATATGAACTCCATC +CTGACAAATGGACAGTCCAGCCTATAATGCTGCCAGATAAAGACAGCTGGACTGTCAATG +ATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAGATTTATCCAGGGATTAAAG +TAAAGCAATTGTGTAAACTCCTCAGGGGAGCCAAAGCACTGACAGATATAGTGACACTGA +CTGAGGAAGCAGAATTAGAATTGGCAGAGAACAGAGAGATTCTAAAAGAACCTGTGCATG +GAGCATATTATGACCCATCAAAAGATCTAGTAGCAGAAATACAGAAACAAGGACAAGACC +AATGGACATATCAAATTTATCAGGAGCCATTTAAGAATCTAAAAACAGGAAAATATGCAA +AAAAGGGGTCTGCTCACACTAATGATGTAAAACAATTAACAGCAGTGGTGCAAAAGGTGG +CCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCATACAAAAAG +AAACATGGGAGGCATGGTGGATGGAGTACTGGCAGGCCACCTGGATTCCTGAATGGGAGT +TTGTCAATACCCCCCCTCTAGTAAAACTATGGTACCAGTTGGAGAAAGAACCCATAGTAG +GAGCAGAGACTTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAARATAGGAAAAGCAG +GGTATGTTACTGACAGAGGAAGACAAAAGGTTGTTTCTCTAACTGAGACAACAAATCAAA +AGACTGAATTACATGCAATCCATCTAGCTTTGCAGGATTCAGGATCAGAAGTAAATATAG +TAACAGACTCACAATATGCATTAGGAATTATTCAGGCACAACCAGACAGGAGTGAATCAR +AGATAGTCAATAAAATAATAGAGAAACTAATAGAAAAAGAAAAAGTCTACCTGTCATGGG +TACCAGCRCACAAGGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAA +TCAGGAGGGTGTTATTTTTAGARGGAATAGATMAGGCTCAAGAGGAACATGAAAAATATC +ACAGCAATTGGAAAGCAATGGCTAGTGATTTTAATCTGCCACCTGTAGTAGCAAAGGAAA +TAGTAGCCAGCTGTGATAAATGTCAACTAAAAGGGGAAGCTATGCATGGACAGGTAGACT +GTAGTCCAGGGATATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTAATCATAGTAG +CAGTCCATGTAGCCAGKGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGG +AGACAGCATACTTTCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAGTACACACAG +ATAATGGCCCCAATTTCACCAGTAGTGCAGTTAAGGCTGCCTGTTGGKGGGCAAATATCC +ATCAGGAATTTGGRATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATA +AGGAATTAAAGAAAATCATAGGGCAGGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAG +TACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTG +CAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAAC +AAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCAATTTGGA +AAGGACCAGCAAAGCTACTCTGGAAAGGTGAAGGGGCAGTGGTAATACAAGACAATAATG +ATATAAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGG +CAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTA +AAACATCATATGTATGTCTCAAAGAAAGCTAGAGAGTGGGTTTATAGACATCACTATGAA +AGCAGGAATCCAAGAGTAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGGCTAGTA +GTAAAAACATATTGGGGTCTGCAGGCAGGAGAAAAAGACTGGCACTTGGGTCATGGGGTC +TCCATAGAATGGAGACAGAAAATGTATAGCACACAAATAGACCCTGACCTGGCGGACCAA +CTAATTCATCTGTATTATTTTGACTGTTTTTCAGAATCTGCCATAAGGAAAGCCATAGTA +GGACACATAGTTAGCCCTAAGTGTAACTATCCAGCAGGACACAACAAGGTAGGATCACTA +CAATACTTGGCACTGAAAGCACTAGTAACACCAACAAGGGAAAGGCCACCTTTGCCTAGT +GTTAGGAAACTAACAGAGGATAGATGGAACAAGCCCCAGAAGACCAGGGGCCGCAGAGGG +AACCACACAATGAATGGATGTTAGAACTGTTAGAAGATATTAAGGTTGAAGCTGTCAGAC +ATTTTCCAAGACGGTGGCTACATGGATTAGGACAACATATCTATAACACCTATGGGGATA +CTTGGGAAGGGGTTGAAGCTATAATAAGAACTTTGCAACAACTACTGTTTGTTCATTTCA +GAATTGGGTGCCAACATAGCAGAATAGGCATTGTGCAAAGGAGAAGAGGCAGAAATGGAT +CCAGTAGATCCTAACCTAGAGCCCTGGAATCATCCAGGAAGTCAGCCTAAAACTGCTTGT +AGCAATTGTTACTGTAAAAGGTGTTGCTGGCATTGCCAAATTTGCTTTCTAAAAAAAGGC +TTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACACAGACGCGGAACTCCTCACAGCAGT +AAGGATCATCAAACTCCTATATCAAAGCAGTAAGTAGTAAATAAATGTAATGACACCTTT +AGAAATCTATGCAATAGTAGCATTAGTAATAGTGTTTGTCATAGCAGTAGTTGTGTGGAC +TATAGTAGGCATAGAATATAGGAAATTGCTAAAACAAAGAAAAATAGACAGATTAATTAA +GAGAATAAGAGAAAGAGCAGAAGACAGTGGCAATGAAAGCGAGGGGGATGAAGAGGAATT +ATCAACACTTATGGAGGTGGGGGACTATGTTCCTTTGGATGATAATAATGTGTAAGGCTG +CAGAAAACTTGTGGGTCACGGTATACTATGGGGTACCTGTGTGGAGAGATGCAGAGACCA +CCCTATTCTGTGCATCGGATGCTAAAGCATATGATAAAGAAGTACACAATGTCTGGGCCA +CACATGCCTGTGTACCCACAGACCCTAACCCGCAAGAAATAATTTTGGAAAATGTGACAG +AAGAATTTAACATGTGGAAAAATAACATGGTAGAACAAATGCAAACAGATATAATCAGTC +TCTGGGACCAAAGCCTAAAGCCATGTGTACAGTTAACCCCTCTCTGCGTTACTTTAAATT +GTACTGAACCCATCAGCACTAACTCTAACAACAGTATCTTTAACTCTAACAACAGTATCT +TTAACAACAGTAGCGTTAACAGCAATAATAGCATGGTAGGAGAAATAAAAAACTGCTCTT +TCAACATGACCACAGAACTAAGAGATAAAAGGAAAACTGTACATTCACTTTTTTATAAAC +TTGATATAGTACCAATTGATAATGATAATAATAATAGTAGTCAGTATAGACTAATAAATT +GTAATACATCAACCGTGACACAGGCCTGTCCTAAGGTAAACTTTGAGCCAATTCCTATAC +ATTATTGTACCCCAGCTGGTTTTGCGATTCTAAAGTGCAGGGATCCAAACTTTACGGGAA +AAGGGCCATGCAAGAATGTCAGCACAGTACAATGCACACATGGAATCAGGCCAGTAGTAT +CAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAAGTAATGATTAGATCTGAAA +ATATTACAGACAATGGCAAGACCATAATAGTACAGCTTACTGAGCCTGTAAACATCACTT +GTATCAGACCTGGCAACAATACAAGAACAAGTATACGTATAGGACCAGGACAAACCTTCT +ATGCAACAGGTGATGTAATAGGGGACCCAAGAAAAGCACACTGTGAAGTCAACAAAACAG +CATGGAATAACACTTTACAAAAGATAAGTATGCAATTAAGAAAATACTTTAATAACAAAA +CAATAATCTTTAAGAAATCCTCAGGAGGGGATTTAGAAGTTACAACACATAGTTTCAATT +GTGGAGGAGAATTTTTCTATTGCGATACAACAGCCCTGTTCAATAGCACTTGGGAAAATG +GCACTGTTATAAATAGCACACAGGCCAATGAGACTATAACTCTACCATGCAGAATAAAGC +AAATTATAAATATGTGGCAGAGAGTAGGACGAGCAATGTATGCCCCTCCTATCAGAGGAA +TTATAAGGTGTGAATCAAACATTACAGGACTACTACTAACAAGAGATGGTGGAGGTGGAA +ATAATAGCAGCAATGAGACCTTCAGACCTATAGGAGGAAATATGGAGGACAATTGGAGAA +GTGAACTATATAAGTATAAAGTAGTAGAAATTGAACCAATAGGAGTAGCACCTACCAAGG +CAAAGAGAAGAGTGGTGGAGAGGGAAAAAAGAGCAATTGGACTGGGAGCTGCCTTCCTTG +GGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCACTAACGCTGACGGTACAGG +CCAGACAATTATTGTCTGGCATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGG +CTCAGCAGCATCTGCTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCC +TGGCTGTGGAAAGATACCTAAAGGATCAGCAGCTCCTAGGAATTTGGGGTTGCTCTGGAA +AACTCATCTGCACCACTACTGTGCCCTGGAACTCTAGTTGGAGTAATAAATCTCAGGATG +AGATATGGGAGAACATGACCTGGATGCAATGGGACAAGGAAATTATCAATTACACAAACA +AAATATATGATCTAATTGAAAAATCGCAAAACCAGCAGGAAAAGAATGAACAAGATTTAT +TAGCATTGGATAAGTGGGAAGGTCTGTGGAGTTGGTTTAGCATATCAAATTGGTTATGGT +ATATAAGAATATTTATAATAATAGTAGGAGGCTTAATAGGATTAAGAATAGTTTTTGCTG +TGCTTTCTATAATAAATAGAGCCAGGCAGGGATACTCACCCTTGTCATTGGACACCCTTA +CCCCACACCCAGAGGGACCAGACAGGCCCGGAGAAATCAAAGAAGAAGGTGGAGAGCAAG +GCAGAGACAGATCGATTCGATTAGTGAGCGGATTCTTAGCACTTGCCTGGGACGATCTGA +GGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGAGACTTCATCTCGATTGCAGCGAGGA +CTGTGGAACTTCTGGGACGCAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAGGGCCTCA +AATATCTGGGGAATCTTCTGGGATATTGGGGTCAGGAACTAAAGAGTAGTGCTATTAATC +TGGTAGATACCATAGCAATAGTAGTAGCTGGGTGGACAGATAGGGTTTTGGAAATAGGAC +AAAGATTTTGTAGAGCTATTTGTAACATACCTAGGAGAATCAGACAGGGCGCAGAAAAGG +CTTTGCAATAACATGGGGGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGATT +AGGGAAAGAATAAGACGAGCTCCTGCTCCAGCTCCTGCTCCAGCACCAACAGGAGTAGGA +CCAGTRTCTCGAGATTTGGATAAACATGGAGCAGTCACAAGCAGTAATACAGCAGCTACT +AATGCTGATTGCGCCTGGCTGGAGGCGCAAGAGGAAGAGGARGTAGGCTTTCCAGTCAAG +CCGCAGGTACCTTTGAGACCRATGACATATAAGGGAGCTTTCGATYTCAGCCACTTTTTA +AAAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAGAAAAGACAAGAAATCCTTGAT +YTGTGGGTYTATCACACCCAAGGCTACTTCCCTGATTGGCAGAATTATACCCCAGGGCCA +GGGGTTAGATACCCMCTAACATTTGGGGGGTGYTCCAAGCTAGTACCAGTTGACCCAGAT +GAAGTAGAAGCAGCCCCAGAGGGAGAGAACAACTGCCTTTTACCCCCTATATGCCAGCCC +GGAATGGATGATGAGGAGAAAGAAGTGTTAATGTGGAAGTTTGACAGTCCCCTGGCTTTA +AAACCCAGAGCCCGAGARCTGCATCCGGAGTTTTACAAAGACTGCTGACACAGACTGCTG +ACATGAAGTTGCTGACAGGGACTTTCCGCAGGGACTTTCCAGGGGGGTGTGGTTTGGGCG +GAGTTGGGGAGTGGCTAACCCTCAGATGCTG +>C.MW.2009.0.DEMC09MW009.KP109526 KP109526 +CCGAACAGGGACCTGAAAGCGAAAGTAAGACCAGAGAAGATCTCTCGACGCAGGACTCGG +CTTGCTGAAAGTGCACTCGGCAAGAGGCGAGAGCGGCGGCTGGTGAGTACGCCAAATTTT +ATTTGACTAGCAGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAATATTAAGAGGG +GGAAAATTGGATAAATGGGAAAAAATTAGGTTAAGGCCAGGGGGAAAGAAACATTATATG +ATAAAACACATAGTATGGGCAAGCAGGGAGCTGGAAAGATTTGCACTTAACCCTGGCCTT +TTAGAGACAGCGGATGGCTGTAAACAAATAATAAAACAGCTACACCCAGCTCTTAAGACA +GGAACAGAGGAACTTAGATCATTATATAACACAGTAGCAACTCTCTACTGCGTACATGCA +GGGATAGAGGTACGAGACACCAAGGAAGCCTTAGACAAGATAGAGGAAGAACAAAATAAA +TGTCAGCAAAAAACACAGAAGGCACAAGCAGCTGACGAGAAAGTCAGTCAAAATTATCCA +ATAGTGCAGAATCTCCAAGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTGAAT +GCATGGGTGAAAGTGATAGAGGAAAAAGCTTTTAGCCCAGAGATAATACCCATGTTTTCA +GCATTATCAGAAGGGGCCACCCCACAAGATTTAAACACCATGTTAAATACAGTGGGGGGA +CATCAAGCAGCCATGCAAATGTTAAAGGATACTATCAATGAGGAGGCTGCAGAATGGGAT +AGGCTACATCCAGTCCATGCAGGGCCTATTGCACCAGGTCAAATGAGAGAACCAAGGGGA +AGTGACATAGCAGGAACCACTAGTACCCTTCAGGAACAAATAGCATGGATGACAAATAAC +CCACCTATTCCAGTGGGAGACATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATA +GTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGACAAGGGCCAAAGGAACCCTTT +AGAGACTATGTAGATCGGTTCTTTAAAACTCTAAGAGCTGAACAAGCTACACAAGAGGTA +AAAAATTGGATGACAGACACCTTGTTGGTCCAAAATGCGAACCCAGACTGTAAGACAATT +TTAAAAGCATTAGGACCAGGGGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTG +GGAGGACCTAGCCACAAAGCAAGGGTTTTGGCTGAGGCAATGAGTTTGGCAGGCAATACA +AACATAATGATGCAGAGAAGCAATTTTAAAGGATCTAAAAGAGTGGTTAAATGTTTCAAC +TGTGGCAAGGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAAGGCTGTTGG +AAATGTGGAAAGGAAGGACACCAAATGAAAGACTGTACTGAAAGACAGGCCAATTTTTTA +GGGAAAATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCATTCAGAACAGGCTAGAA +CCAACAGCCCCACCAGCAGAGAGCTTCAGATTCGAGGAGACAACCCCTGCTCCGAAACAG +GGACCGAAAGAAGGGGACTTAATTTCCCTCAAATCACTCTTTGGCAGCGACCCATTGTCA +CAATAAAAGTAGGGGGCCAGATAAAGGAGGCTCTCTTAGACACAGGAGCAGATGATACTG +TATTAGAAGAAATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAG +GTTTTATCAAAGTAAGACAGTATGATCAAATACTTATAGAAATTTGTGGAAAAAGGGCTA +TAGGTGCAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACTC +AGCTTGGATGCACACTAAATTTTCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAA +AGCCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAG +CTTTAACAGCCATTTGTGAAGAAATGGAGAGGGAAGGAAAAATTACAAAAATTGGGCCTG +AAAATCCATATAACACTCCAATATTTGCCATAAAAAAGAAAGACAGTACTAAGTGGAGAA +AATTAGTAGACTTCAGGGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAG +GAATACCACACCCAGCAGGGTTAAAAAAGAAAAAATCAGTGACAGTACTGGATGTGGGAG +ATGCATATTTTTCAGTCCCTTTAGATGAAGGTTTCAGGAAATATACTGCATTCACCATAC +CTAGTACAAACAATGAAACACCAGGGATAAGGTATCAATATAATGTGCTTCCACAGGGAT +GGAAAGGATCACCAGCAATATTCCAATGTAGCATGACAAAAATCTTAGAGCCTTTTAGGG +CAAGAAATCCAGAAATAGTTATCTATCAATATATGGATGACTTGTATGTAGGATCTGACT +TAGAAATAGGGCAACACAGAGCAAAAATAGAGGAGTTAAGGGAACATCTATTAAAATGGG +GATTTACCACACCAGACAAGAAGCATCAAAAGGAACCCCCATTTCTTTGGATGGGGTATG +AGCTCCATCCTGACAAATGGACAGTGCAGCCTATACAGCTGCCAGAAAAGGATAGCTGGA +CTGTCAATGATATACAGAAGTTGGTGGGAAAATTAAACTGGGCAAGTCAGATCTATGCAG +GAATTAAAGTAAAACAACTTTGTAAACTCCTTAGGGGAGCCAAAGCACTAACAGACATAA +TACCACTAACTGAAGAAGCAGAATTAGAATTAGCAGAGAATAGGGAAATACTAAGAGAAC +CAGTACATGGAGTATATTATGATCCATCAAAAGACTTAATAGCTGAAATACAGAAACAAG +GGCAGGGCCAATGGACATATCAAATTTATCAAGAACCATTCAAGAATCTGAAAACAGGGA +AGTATGCAAAAACAAGGACTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGC +AAAAAATATCCATGGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCA +TCCAAAAAGAAACATGGGAGACATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTG +AGTGGGAGTTTGTTAATACCCCTCCCCTAGTAAAATTATGGTACCAGCTGGAGAAAGACC +CCATAGCAGGGGCAGAAACTTTCTATGTAGATGGAGCAGCTAACAGAGAAACTAAACTAG +GGAAAGCAGGGTATGTTACTGACAAAGGAAGGCAGAAAATTATCTCTCTAACTGAAACAA +CAAATCAGAAGGCTGAGCTACAAGCAATTCAGCTAGCTTTACAGGATTCAGGATCAGAAG +TAAACATAGTAACAGACTCACAGTATGCATTAGGAATCATTCAAGCACAGCCAGATAGGA +GTGAATCAGAGTTAGTTAGCCAAATAATAGAGCAGTTAATAAACAAGGAAAGAATTTACC +TGTCATGGGTACCAGCACATAAAGGAATTGGAGGAAATGAACAAGTAGACAAATTAGTAA +GTAGTGGAATCAGGAAAGTGCTGTTTCTAGATGGAATAGATAAGGCTCAGGAAGAGCATG +AGAAGTATCACAGCAATTGGAGAGCAATGGCTAGTGAGTTTAATCTGCCACCCGTAGTAG +CAAAAGAAATAGTAGCTTGTTGTGATAAATGTCATCAAAAAGGGGAAGCCATACATGGAC +AAGTGGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAAGGAAAAGTTA +TCCTGGTAGCAGTCCATGTAGCCAGTGGATACATAGAAGCAGAGGTTATCCCAGCAGAAA +CAGGACAAGAAACAGCATACTACATACTAAAATTAGCAGGAAGATGGCCAGTCAAAGTAA +TACATACAGACAATGGCAGTAATTTCACCAGTGCTGCAGTTAAGGCAGCCTGTTGGTGGG +CGGGTATCAAACAGGAATTTGGGATTCCCTACAATCCCCAAAGCCAAGGAGTAGTAGAAT +CCATGAATAAAGAATTAAAGAAAATCATAGGGCAAGTAAGAGATCAAGCTGAGCACCTTA +AAACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAGAGGGGGGATTGGGG +GGTACAGTGCAGGGGAGAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAAT +TACAAAAACAAATTACAAAAGTTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACC +CTATTTGGAAAGGACCAGCCAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAG +ATAACAGTGACATAAAGGTAGTACCAAGGAGGAAAGTAAAAATTATTAAGGACTATGGAA +AACAAATGGCAGGTGCTGATTGTGTGGCAAGTAGACAGGATGAGAATCAGGACATGGAAT +AGTTTAGTAAAACACCATATGTATGTTTCAAGGAGAGCTAATGGATGGTTTTACAGACAT +CATTATGAAAGCAGACATCCAAAAGTAAGTTCAGAAGTACACATCCCATTAGGGGAGGCT +AGATTAGTAATAATAACATATTGGGGTTTGCAAACAGGAGAAAGAGAGTGGCATCTGGGT +CATGGAGTCTCCATAGAATGGAGATTGAGAAGATATAGCACACAAATAGACCCTGGCCTG +GCAGACCAACTAATTCATATGCATTATTTTGATTGTTTTGCAGACTCTGCCATAAGAAAA +GCCATATTAGGACATATAGTTAGACCTAGGTGTGACTATCAAGCAGGACATAATAAGGTA +GGATCTCTACAATACTTGGCACTGACAGCATTGATAAAACCAAAAAAGAGAAAGCCACCT +CTGCCTAGTGTTAGGAAATTAGTAGAGGATAGATGGAACAACCCCCAGAAAACCAGGGGC +CGCAGAGGGAACCATACAATGAATGGGCATTAGAGATTCTAGAAGAACTGAAGCAGGAAG +CTGTCAGACACTTTCCTAGACCATGGCTCCATGGCTTAGGACAATATATCTATGAAACCT +ATGGAGATACATGGGCTGGGGTTGAAGCTCTAATAAGAGTACTGCAACAATTACTGTTTG +TTCATTTCAGAATTGGGTGCCAGCATAGCAGAATAGGCATTTTGCAACAGAGGAGAGCAA +GAAATGGACCCAATAGATCCTAACCTAGAGCCCTGGAACCATCCAGGAAGTCAGCCTAAA +ACTGCTTGTAACGATTGCTATTGTAAGCACTGCTGCTACCATTGTTTAGTTTGCTTCCAG +ACAAAAGGCTTAGGCATTTACTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAACTCCT +CCGAGCAGTGAGGATCATCAAGATTCTGTATCAAAGCAGTAAGTACTCAATAGTAGATGT +AATGTTAGAGTTAATAGATTATAGATTAGCAGTAGGAGCATTAATAGTAGCATTAATCTT +AGCAATAATAGTGTGGACCATAGCATATATAGAATATAGGAAATTGGTAAGACAAAGAAA +AATAGACTGGTTAATTAAAAGAATTAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGTGA +TGGGGATACAGAAGAATTGTCAACAATGGTGGATATGGGGCATCTTGGGCTTTTGGATGC +TAATGATTTGTAATACGAAGGACAGGGACTTGTGGGTCACAGTCTACTATGGGGTGCCTG +TGTGGAAAGAAGCAAAAACTACCCTATTTTGTGCATCAGATGCTAAAGCATATGACAAAG +AAGTGCATAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAACCCACAAGAAA +TGCCTTTGGAAAATGTAACAGAAAACTTTAACATGTGGGAAAATGACATGGTAGATCAGA +TGCATGAGGATATAATCAGTCTATGGGATCAAAGCCTCAAGCCGTGTGTAGAGTTGACCC +CACTATGTGTCACTTTAAACTGTACTACCTACAATAATAACAGTGGGAACCTTAGGGAAG +ACATGGAAGGAAAAATACAAAACTGCTCTTTCAATGTAACCACAGAATTAAGAGATAAGA +AAAGTAAAGAATATGCACTTTTTTATAGAATTGATCTAGTACCACTTAATAGCTCTAGTA +ACTCTAATATAGTACCATCTAATAGCTCTAGTAACTCTAGTGAGTATAGTGAGTATAGAT +TAATAAATTGCAATACCTCAACCATAACACAAGCCTGTCCAAAGGTCTCTTTTGACCCAA +TTCCTATACATTATTGTGCTCCAGCTGGATATGCGATTCTAAAGTGTAATAATAAGACAT +TCAATGGAACAGGACCATGCAATAATGTCAGCACAGTACAATGTACACATGGAATTAAGC +CAGTGGTATCAACTCAGTTACTGTTAAATGGTAGTCTAGCAGAAGAAGAGATAATAATTA +GATCTAAAAATTTGTCAGACAATGCCCAAACAATAATAGTACATCTTAATAAATCTGTAG +AGATTAAGTGTATAAGACCCGGCAATAATACAAGGAAAAGTGTGAGGATAGGACCAGGAC +AAACATTCTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTA +GTGAAACTGATTGGAAAGAAACTTTACACAATGTTAGCAAAAAACTAAAAGAACACTTCA +ATAAAACAATAAAGTTTAGCTCATCCTCAGGAGGGGACCTAGAAATTACAACACATAGTT +TTAATTGTGGAGGAGAATTTTTCTATTGCAATACATCAGGACTGTTCAATGGCACATACA +ATAATACAAATAGTACAGAGGGTATAAATAAAACCATCACACTCCCATGCAGAATAAAAC +AAATTATAAACATGTGGCAGAAGGTAGGACGAGCAATGTATGCCCCGCCCATTGCAGGAA +ACATAATATGTAACTCAAGTATCACAGGACTACTATTGACACGTGATGGAGGAGTACATG +ACAATGAGAATGAGACGGAGACATTCAGACCTGGAGGAGGAGACATGAGGGACAATTGGA +GAAGTGAATTATATAAATATAAAGTGGTAGAAGTGGAGCCATTGGGAGTGGCACCCACTA +AGGCAAAAAGAAGAGTGGTGGAGAGAGAGAAAAGAGCAGTGGGAATAGGAGCTTTGTTCC +TTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTAC +AGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAGGACAATCTGCTGAGAGCTATAG +AGGCGCAACAGCATATGTTGCAACTCACAGTCTGGGGTATTAAGCAACTCCAGGCAAGAA +TCCTGGCTATAGAAAGATACCTAAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTG +GAAAACTCATCTGCACCACTGCTGTGCCTTGGAATGATAGTTGGAGCAATAAAACTTATG +ATGAGATTTGGGAGAACATGACCTGGATGCAGTGGGATAGAGAAATTAGTAATTACACAT +ACACAATATACAGGTTGCTTGAAGACTCGCAAATCCAGCAGGAAAAAAATGAACAGGATT +TATTAGCATTGGACAGTTGGAAAAATCTGTGGAGTTGGTTTGGCATAACAAAATGGTTGT +GGTATATAAAAATATTTATAATGATAGTAGGAGGCTTGATAGGTTTAAGAATAGTTTTTG +CTGTACTATCCATAGTGAATAGAGTTAGGCAGGGATACTCACCTTTGTCGTTCCAGACCC +TCAGCCCGAACCCAGGGGGACCAGACAGGCTCGGAAGAATCGACGAAGAAGGTGGAGAGC +AAGACAGAAACAGATCTGTGCGCTTAGTGAACGGATTCTTAGCACTTGCCTGGGACGACC +TGCGGAGCCTGTGCCTCTTCAGCTACCGCCAATTGAGAGACTTCATATTGATTGCAGCGA +GAGCGGCGGAACTTCTGGGACGCAGCAGTCTCAGGGGACTACAGAGGGGGTGGGAAGCCC +TTAAATATCTGGGAAGTCTTGTGCAGTATTGGGGTCTGGAACTAAAAAGGAGTGCTATTA +GTCTGCTTGATACCATAGCAATAGCAGTAGCTGAAGGAACAGATAGAATTATAGAAGTAG +TACAGAGACTTTGTAGAGCTATCCTCAATATACCTAGAAGAATCAGACAGGGCTTTGAAA +CAGCTTTGCTATAAAATGGGGGGCAAGTGGTCAAAAAGCAGTCTAGTTGGATGGCCTGCT +GTCAGGGAAAGAATGAGACGTACACCAGTAGCAGAGAAAGTAGGAACAGCAGCAGAGGGA +GTAGGAACAGCGTCTCAAGACTTAGATAAGCATGGGGCACTTACAACCAGTAACACAGCC +AGCAACAATGCTGCTTGTGCCTGGCTGGAGGCACAAGAAGAGGGAGGGGGTGAAGAGGTT +GGCTTTCCAGTCAGACCTCAGGTGCCTCTAAGACCAATGACTTATAAAGCAGCATTCGAT +CTCGGCTTCTTTTTAAAAGAAAAGGGGGGACTGGATGGGTTAATTTACTCCAAGAAAAGA +CAAGAAATCCTTGATTTGTGGGTCTATAACACACAAGGCTTCTTCCCTGATTGGCAAAAC +TACACACCAGGACCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTA +CCAGTTGACCCAAAGGAAGTCGAAGAGGCCAATGAAGGAGAGAACAACAGCCTGCTACAC +CCTATGAGCCTGCATGGAATGGAGGATGAAGAAGGAGAAGTATTAAGATGGAAGTTTGAC +AGCAGTCTCGCACGCAGACACCTAGCCCGCGAGCTACATCCGGAGTGGTACAAAGATTAA +TTGCTGACACAGACTGCTGACACAGCGGGACTTTCCGCTGGGACTTTCCACTGGGGCGTG +CCAGGAGGGGTGGTCTGGGCGGGACGGGGAGTGGCCAGCCCTCAGATGCTGCATATAAGC +AGCTGCTTTTCGCCTGTACTGGGTCTCTCTAGGTAGACCAGATCTGAGCCCGGGAGCTCT +CTGGCTATCTAGGGAACCC +>C.MW.2009.0.CH1064.PL.080409.A2.08.KY111994 KY111994 +GAGATCCCTCAGACCCTTTTGGTAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGG +ACTTGAAAGCGAAAGTAGAACCAGAGAAGATCTCTCGACGCAGGACTCGGCTTGCTGAAG +TGCACTCGGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAAAATTTTATTTGACTAG +CGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAAAGGCGGAAAATTAG +ATAAATGGGAAAAAATTAGGTTAAGGCCAGGGGGAAAGAAACATTATATGTTAAAACATT +TAATATGGGCAAGCAGAGAGCTGGAAAGATTTGCACTTAACCCTGGCCTTTTGGAAACAT +CAGAAGGCTGTAAGCAGATAATAAAACAGCTACAACCAGCTCTTCAGACAGGGACAGAGG +AACTTAGATCATTATTTAACACAGTAGCAGTTCTCTATTGTGTGCATCAAAATATAGAGG +TAAGAGACACCAAGGAAGCCTTAGACAAGATAGAGGAAGAACAAAAGAAATGTCAGCAAA +AAACACAGCAGGCACAAACGGCTGGCGGAACGGTCAGTCAAAATTATCCTATAGTGCAAA +ATCTTCAAGGGCAAATGGTACACCAGGCCATATCACCTAGAACTTTGAATGCATGGGTAA +AAGTAATAGAGGAGAAGGCCTTTAGCCCAGAGGTGATACCCATGTTTACAGCATTATCAG +AAGGAGCCACCCCACAAGATTTAAACACCATGCTAAATACAGTGGGGGGACATCAAGCAG +CCATGCAAATGTTAAAGGATACCATCAATGAGGAGGCTGCAGAATGGGATAGATTACATC +CAGTACATGCAGGGCCTGTTGCACCAGGCCAAATGAGAGAACCAAGGGGAAGTGACATAG +CAGGAACTACTAGTACCCTTCAGGAACAAATAAATTGGATGACAGGTAACCCACCTATTC +CAGTGGGAGACATCTATAAAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGT +ATAGCCCTGTCAGTATTTTGGACATAAAACAAGGGCCAAAGGAACCTTTTAGAGACTATG +TAGACCGGTTCTTTAAATGTCTAAGAGCAGAACAGGCTTCACAAGATGTAAAAAATTGGA +TGACAGACACCTTGTTGGTCCAAAATGCAAACCCAGATTGTAGAAACATTCTAAAAGCAT +TGGGAACAGGGGCTACATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTG +GTCATAAAGCAAGAGTTTTGGCTGAGGCAATGAGCCATGTAACAAATGCAAATGCTGCTA +TAATGATGCAGAGAAACAATTTTAAGGGCCCAAAGAAAAACATTAAGTGTTTCAACTGTG +GCAAGGAAGGGCACATAGCCAGAAATTGCAGGGCCCCTAGGAAAAAAGGCTGTTGGAAAT +GTGGAAGGGAAGGACACCAAATGAAAGACTGTACTGAAAGACAGGCTAATTTTTTAGGGA +AAATTTGGCCTTCCCACAAGGGGAGGCCAGGGAATTTCCTCCAGAGCAGACCAGAGCCAA +CAGCCCCACCAGCAGAGAGCTTCAGGTTCGAGGAGACAACCTCTGCTCTGAAGCAGGAGC +CGAAAGACAGGGAACCCTTAACTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCTC +AGTAAAAGTAGGGGGCCAGATAAGAGAGGCTCTCTTAGACACAGGAGCAGATGATACAGT +ATTAGAAGAAATAGATTTGCCAGGAAAATGGAAACCAAAAATGATAGGAGGAATTGGAGG +TTTTATCAAAGTAAGGCAGTATGATCAAATACTTATAGAAATTTGTGGAAAAAAGGCTAT +AGGTACAGTGTTAGTGGGACCTACACCTGTCAACATAATTGGCAGAAACATGTTGACTCA +GCTTGGATGCACACTAAATTTTCCAATTAGTCCCATTGAAACTGTACCAGTAAAATTGAA +ACCAGGAATGGATGGCCCAAAGGTTAAACAGTGGCCATTATCAGAAGAGAAAATAAAAGC +ATTAACAGCAATTTGTGACGAAATGGAGAAGGAAGGAAAAATTACAAAAATTGGGCCTGA +AAATCCATATAACACTCCAATATTTGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAA +ATTAGTAGATTTCAGAGAACTCAATAAAAGAACTCAAGACTTTTGGGAGGTTCAATTAGG +AATACCACACCCAGCAGGGTTAAAAAAGAAAAAATCAGTGACAGTACTGGATGTGGGGGA +TGCATATTTTTCAGTTCCTTTAGATGAAAACTTTAGGAAATATACTGCATTCACCATACC +TAGTAGAAACAATGAAACACCAGGGATTAGATATCAATATAATGTGCTGCCACAGGGATG +GAAAGGATCACCAGCAATATTCCAGCACAGCATGACAAAAATCTTAGAGCCCTTTAGAAC +AAAAAATCCAGAAATAATTATCTATCAATATATGGATGACTTGTATGTAGGGTCTGACCT +AGAAATAGGGCAACATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTGAGATGGGG +ATTTACCACACCAGACAAGAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGA +ACTCCATCCTGACAAATGGACAGTACAGCCCATACAGCTGCCAGAAAAGGAAAGCTGGAC +TGTCAATGATATACAGAAGTTGGTGGGAAAATTAAACTGGGCAAGTCAGATTTACCCAGG +GATTAAAGTAAGGCAACTTTGCAAACTCCTTAGGGGGGCCAAAGCACTAACAGACATAGT +ACCACTAACTGAAGAAGCAGAATTAGAATTGGCAGAGAACAGGGAAATTCTAAAAGAACC +AGTACATGGGGTATATTATGACCCATCAAAAGACTTGATAGCTGAAATACAAAAACAGGG +TCATGATCAATGGACATATCAAATTTACCAAGAACCATTTAAAAATCTGAAAACAGGAAA +GTATGCAAAAATGAGGACTGCCCACACTAATGATGTCAAACAGTTAACAGAGGCAGTACA +AAAGATAGCCTTGGAAAGCATAGTGATATGGGGAAAGACTCCTAAATTTAGACTACCCAT +CCAAAAGGAAACATGGGAGACATGGTGGACAGATTATTGGCAAGCCACCTGGATTCCTGA +TTGGGAGTTTGTCAATACCCCTCCTCTAGTAAAATTATGGTACCAGCTAGAAAAAGAGCC +CATAGCAGGAGTAGAAACTTTCTATGTAGATGGAGCAGCTAATAGGGAAACTAAAATGGG +AAAAGCAGGGTATGTTACTGACAGAGGAAGGCAGAAAGTCATTACTCTAAATGAAACAAC +AAATCAGAAGACTGAATTACAAGCAATTCATCTAGCCTTGCAAGATTCAGGATCAGAAGT +AAACATAGTAACAGACTCACAGTATGCATTAGGAATCATCCAAGCACAACCAGATAAGAG +TGAATCAGAGTTAGTCAATCAAATAATAGAGCAGCTAATAAACAAGGAAAGGGTTTACCT +GTCATGGGTACCAGCACATAAGGGAATTGGAGGAAATGAACAAGTGGATAAATTAGTAAG +CAGTGGAATCAGGAAAGTGTTGTTTTTAGATGGAATAGATAAGGCTCAAGAAGAGCATGA +AAAATATCACAACAATTGGAGAGCAATGGCTAGTGATTTTAATCTGCCACCCATAGTAGC +AAAAGAAATAGTAGCTAGCTGTGATAAATGTCAGCAAAAAGGGGAAGCCATACATGGACA +AGTAGACTGTAGTCCAGGGATATGGCAATTAGACTGTACACATTTAGAAGGAAAAGTTAT +CCTAGTAGCAGTCCATGTAGCCAGTGGCTATATAGAAGCAGAGGTTATCCCAGCAGAAAC +AGGACAAGAAACAGCATACTATATATTAAAATTAGCAGGAAGATGGCCAGTCAAAGTAAT +ACATACAGACAATGGCAGTAATTTCACCAGTGCTGCAGTTAAGGCAGCCTGTTGGTGGGC +AGGTATCAACCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAGGGAGTAGTAGAATC +CATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTAAGAGATCAAGCTGAGCATCTTAA +AACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGG +GTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACATACAAACTAGAGAATT +ACAAAAACAAATTATAAAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGATCC +TATTTGGAAAGGACCAGCCAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGA +TAACAGTGACATAAAGGTAGTACCAAGGAGGAAAGTAAAAATCATTAAGGACTATGGAAA +ACAGATGGCAGGTGCTGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAATA +GTTTAGTAAAGCACCATATGTATGTTTCAAGGAGAGCTAGTGGGTGGTTTTACAGACATC +ATTTTGAAAGCAGACATCCAAAAACAAGTTCAGAAGTACATATACCATTAGGAGAAGCTA +GATTGATAATAAAAACATATTGGGGTTTGCAAACAGGAGAAAGAGACTGGCATTTGGGTC +ATGGAGTCTCCATAGAATGGAGACTGAGAAGATATAGCACACAAGTAGACCCTAGCCTGG +CAGACCAGCTAATTCATATTCATTATTTTGATTGTTTTGCAGAATCTGCCATAAGGAAAG +CCATATTAGGACACATAGTTAGTCCTAGGTGTGACTATCAAGCAGGACATAATAAGGTAG +GATCTCTACAATACTTGGCCCTGACAGCATTGATAAAACCAAAAAGGATAAAGCCACCTC +TGCCTAGTGTTAGCAAGTTAGTAGAGGATAGATGGAACAACCCCCAGAGGACCAGGGGCC +GCAGAGGGAACCATACAATGAATGGACACTAGAGCTTTTAGAAGAACTCAAGCAGGAAGC +TGTCAGACACTTTCCTAGAACGTGGCTCCATGGCTTGGGACAACACATCTATGAAACCTA +TGGGGATACTTGGATGGGAGTCCAAGCTATAATAAGAATTTTGCAACAACTACTGTTTGT +TCATTTCAGAATTGGGTGCCAGCACAGCAGAATAGGCATTATGCCACGTAGAAGAACAAG +AAATGGAACCAGTAGATCCTAAACTAGAGCCCTGGAACCATCCAGGAAGTCAGCCAAAAA +CCCCTTGTAATAATTGTTATTGTAAACACTGTAGCTACCATTGTTTAGTTTGCTTTCAGA +CAAAAGGCTTAGGCATTTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGCGCTCCTC +CGAGCAGTGAGGATCATCAAAATCCTCTATCAAAGCAGTAAGTAACCAATAGTAGATGTA +ATGTTTGATTTATATGCAAAAGTAGATTATAGACTAGGAGTAGGAGCATTGATAGTAGCA +CTAATCATAGCAATAATTGTGTGGACCATAGTATATATAGAATATAGGAAACTGTTAAGA +CAAAGGAAAATAGACTGGTTAATTAAAAGAATTAGGGAAAGAGCTGAAGATAGTGGCAAT +GAGAGTGATGGGGATACTGAAGAATTATCCACAATGGTGGATATGGGGCATCTTAGGCTT +TTGGATGCTAATGATTTGTAATGGGAAAGGAAACTTGTGGGTCACAGTCTATTATGGGGT +ACCAGTATGGAAAGAAGCAAAAACTACTCTGTTTTGTGCATCAGATGCCAAAGCATATGA +GAAAGAAGTGCATAATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCCAGCCCACA +AGAATTGGTTTTGGAAAATGTAACAGAAAATTTTAACATGTGGAAAAATGATATGGTAGA +TCAGATGCATGAGGATATAATCAGTCTATGGGATCAAAGCCTAAAGCCATGTGTAAAGTT +GACCCCACTCTGTGTCACTTTAAATTGTAGTAATGCTACTGTTGACAGTAGTAAAGTTTA +TGATACTAGGAGTAATGTTAATGTTACCAGTATCAATAATAACATAATGGGAGAAATGAA +AAATTGCTCTTTCAATACAACCACAGAAATAAGAGATAAGGTAAAGAAGGAATATGCACT +TTTTTATAGACCTGATGTAGTACCACTTGATGAAACAAGCAATACCAGTGAGTATAGATT +AATAAATTGTAATACCTCAGCCGTAACACAAGCCTGTCCAAAGGTCACTTTTGAACCAAT +TCCTATACATTATTGTGCTCCAGCTGGTTATGCGATTCTAAAGTGTAATAATAAGACATT +CAATGGAACAGGACCATGCAGTAATGTCAGCACAGTACAATGTACACATGGAATTAGGCC +AGTGGTATCAACCCAACTACTGTTAAATGGTAGTCTGGCAGAAAAAGAGATAGTAATTAG +ATCTGAAAACCTGACAAACAATGCCAAAATAATAATAGTCCATCTTAACACCTCTGTAGA +AATTGTGTGTACAAGGCCCGGCAATAATACAAGGAAAAGTGTGAGAATAGGACCAGGACA +AACATTCTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCACATTGTAACATTAG +TGAAAAGCAATGGAATAACACTTTACAAGAGGTAGGTAAAGAATTGCAAAAACACTTCCC +TAATAAGACAATAAAGTATGAACGATCCGCAGGAGGAGACATGGAAATTGCAACACATAG +CTTTAATTGTGGAGGAGAATTTTTCTATTGCAATACATCAAATCTGTTTAATGGTACATA +CAATGGTACATACATAAGTACAAACAGTACTTCAAACATCACGCTTCAATGCAGAATAAA +ACAAATTATAAACATGTGGCAGGGGGTAGGAAGAGCAATGTATGCTCCTCCCATTGCAGG +AAACATAACATGTAAATCAAATATCACAGGGCTACTATTGACACGTGATGGAGGGACCAA +AAATAATAGCAACGAAACAGAGGAGACATTCAGGCCTGCAGGAGGAGATATGAGGGATAA +TTGGAGAAGTGAATTATATAAATATAAAGTAGTAGAAATTCAGCCATTAGGAATAGCACC +AACTGGTGCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAGCAGGACTAGGAGCTTT +GTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGAC +GGTACAGGCCAGACAATTGTTGTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAGGGC +TATAGAGGCGCAACAGCATATGTTGCAACTCACGGTCTGGGGCATCAAGCAGCTCCAGGC +AAGAGTCCTGGCTCTGGAAAGATACCTAAAGGATCAACAGCTCCTAGGGATGTGGGGCTG +CTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAACACTAGTTGGAGTAATAAATC +TGAAAAGGATATTTGGGATAACATGACATGGATGCAGTGGGAGAGAGAAATTAGCAATTA +CACAGAGACAATATACATGTTGCTTGAAGACTCGCAACACCAGCAGGAAAGAAATGAAAA +AGATTTACTAGCATTGGACAGTTGGAACAGTCTGTGGAATTGGTTTAACATAACAAACTG +GCTGTGGTATATAAGAATATTCATGATGATAGTAGGGGGCTTGATAGGTTTAAGAATAAT +TTTTGCTGTGCTATCTATAGTGAATAGAGTCAGGCAGGGATACTCACCTTTGTCGTTGCA +GACCCTTACCCCAAACCCGAGGGAACCCGACAGGCTCGGAGGAATCGAAGAAGAAGGTGG +AGAGCAAGACAGAGACAGATCCATTCGATTAGTGAGCGGATTCTTGCCAATTGTCTGGGA +CGACCTGCGGAGCCTGTGCCTCTTCAGTTACCACCGATTGAGAGACTTTCTATTGCTGGC +AGCGAGAGTGGTGGAACTTCTGGGACGCAGCAGTCTCAGGGGACTGCAGAGGGGGTGGGA +AGTCCTTAAGTATCTGGGAAGTCTTGTGCAGTATTGGGGTCTGGAACTAAAAAAGAGTGC +TATTAGTCTTTTAGATACCATAGCAATAGCAGTAGCTGAAGGAACAGATAGGATTATAGA +AGTAATACAAAGATTTTGTAGAGCTATCCGCAACATACCTACAAGAATAAGACAAGGCCT +TGAAGCATCTTTGCTATAAAATGGGGAGCAAGTGGTCAAAAAGCAGTGTAGTTGGATGGC +CTGCTGTGAGAGAAAGAATAAGAAGAACTGAGCCAGCAGCAGAAGGGGTAGGAGCAGCAT +CTCGAGACTTAGAGGAACATGGGGCACTTACAACCAGTAACACAGTCAGCAACAATGCTG +CTTGTGCCTGGCTGGAGGCACAAGAGGAGGGAGAAGAAGTAGGCTTTCCAGTCAGACCTC +AGGTGCCTTTAAGACCAATGACTTATAAGGCAGCATTTGATCTCGGCTTCTTTTTAAAAG +AAAAGGGGGGACTGGAAGGGTTAATTTACTCTAAGCAAAGGCAAGACATCCTTGATTTGT +GGGTCTATAACACACAAGGTTTCTTCCCTGATTGGCAAAACTACACACCGGGACCAGGGG +TCAGATACCCACTGACCTTTGGGTGGTGCTTCAAGCTAGTGCCAGTCGACCCAAGGGAAG +TAGAAGAGGCCAATAAAGGAGAGAACAACTGCTTGCTACACCCTATGAGCCTGCAGGGAA +TGGAGGATGAGCATGGAGAAGTATTAAGATGGAAGTTTGACAGTTCACTAGCACGGAGAC +ACATGGCCCGCGAGCTACATCCGGAGTATTACAAAGACTGCTGACACAGAAGGGACTTTC +CACTGGGACTTTCCACTGGGGCGTTCCAGGGGGAGTGGTCTGGGCGGGACTGGGAGTGGC +CAGCCCTCAGATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTCTAGGTA +GACCAGATCTGAGCCTGGGAGCTCTCTGGCCTCCTAGAGAACCCACTGCTTGGGCCTCAA +TAAAGCTTGCCTTGAGTGTT +>C.ZA.2004.0.04ZASK168B1.AY878058 AY878058 +TCTGTTGTGTGACTCTGGTAATACTCTGGTAACTAGAGATCCCTCAGACCCTTGTTGGTT +GCGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGTAAAACCAG +AGGAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGTGCACTCGGCAAGAGGCGAGAGCG +GCGACTGGTGAGTACGCCGAATTTTATTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGG +TGCGAGAGCGTCAATATTAAGAGGGGAAAATTTGGATAAATGGGAGAAAATTAGGTTAAG +GCCAGGGGGGAAGAAACACTATATGTTAAAACACTTAGTTTGGGCAAGTAGGGAGCTGGA +AAAATTTGCACTTAACCCTGGCCTTTTAGAAACATCAGAAGGCTGTAAACAAATAATGCA +ACAGCTACAACCAGCTCTTCAGACAGGAACAGAGGAACTTAAATCATTATACAACACAGT +AGCAGTTCTCTATTGTGTACATAGAAAGATAGATGTAAAAGACACCAAGGAAGCCTTAGA +CAAGATAGAGGAAGAACAAAACAAAAGTCAGCAAAAAACACAGCAGGCAAAAGCGGCTGA +CGGAAAGGTCAGTCAAAATTATCCTATAGTGCAGAATCTCCAAGGGCAAATGGTACATCA +AGCCATATCACCTAGAACCTTGAATGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTTAG +CCCAGAGGTGATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAA +TACCATGTTAAATACAGTGGGGGGACATCAAGCAGCCATGCAGATGTTAAAAGATACCAT +CAATGACGAGGCTGCGGAATGGGATAGATTACATCCAGTACATGCGGGGCCTGTTGCACC +AGGCCAAATGAGAGAGCCAAGGGGAACTGACATAGCAGGAACTACTAGTACCCTTCAGGA +ACAAATAGCATGGATGACAAGTAATCCACCTATTCCAGTGGGAGAAATCTATAAAAGATG +GATAATTCTGGGGTTAAATAAAATAGTGAGAATGTATAGCCCTGTTAGCATTTTGGACAT +AAAACAAGGGCCAAAGGAACCTTTTAGAGACTATGTAGACCGGTTCTTTAAAACTTTAAG +AGCTGAACAAGCTACACAAGAGGTAAAAGTTTGGATGACAGAAACCTTATTGGTCCAAAA +TGCGAACCCAGATTGTAAGACCATTTTAAGAGGATTAGGAGTAGGGGCTACATTAGAAGA +AATGATGACAGCATGTCAGGGAGTGGGAGGACCTAGCCACAAAGCAAGAGTGTTGGCTGA +GGCAATGAGCCAAGCAAACAATGCAAACATAATGATGCAGAGAAGCAATTTTAAAGGCCC +TAGAAGAGTTATTAAATGTTTCAACTGTGGCAAGGAAGGGCACATAGCCAAAAACTGCAG +GGCCCCTAGGAAAAAAGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGACTG +TACTGAAAGGCAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGGCCAGG +GAATTTTCTTCAGAACAGAACAGAGCCAACAGCCCCATTAGAGCCAACAGCCCCACCAGC +AGAGAGCTTCAAGTTCGAGGAGACAACCCCCACTCCGAAGCAGGGGCCGAAAGACAGGGA +ACCTTTAACTTCCCTCAAATCACTCTTTGGCAGCGACCCCTTGTCTCAATAAAAGTAGAG +GGCCAAATAAAGGAGGCTCTCTTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATA +AATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGATTTATCAAGGTA +AGACAATATGATCAGATATTAATAGAAATTTGTGGGAAAAAGGCTATAGGTACAGTATTA +GTAGGACCTACACCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGATGCACA +CTAAATTTTCCAATTAGCCCCATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGAT +GGCCCAAAGGTTAAACAATGGCCATTGACAGAAGAGAAAATAAAAGCATTAACAGCAATT +TGTGAAGACATGGAGAAGGAAGGAAAAATTACAAAAATCGGGCCTGAAAATCCATATAAC +ACTCCAGTATTTGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTC +AGGGAACTCAATAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGAATACCACATCCA +GCAGGGTTAAAAAAGAAAAAATCAGTGACAGTACTAGATGTGGGGGATGCATATTTTTCA +GTGCCTTTAGATGAAGGCTTCAGGAAGTATACTGCATTCACCATACCTAGTATAAACAAT +GAAACACCAGGGATTAGATATCAATATAATGTGCTTCCACAGGGATGGAAAGGATCACCA +GCCATATTCCAAAGTAGCATGACAAAGATCTTAGAGCCCTTTAGAGCAAAAAATCCAGAA +ATAGTCATCTATCAATATATGGATGACCTGTATGTAGGATCTGACTTAGAAATGGGCAAC +ATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTAAAATGGGGATTTACCACACCAG +ACAAGAAACATCAGAAGGAACCCCCATTTCTTTGGATGGGGTATGAACTTCATCCTGACA +AATGGACAGTACAGCCTATACAGTTGCCAGAAAAGGATAGCTGGACTGTCAATGATATAC +AGAAGTTAGTGGGAAAACTAAACTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGC +AACTTTGTAAACTCCTAAGGGGAGCCAAAGCACTAACAGATATAGTACCACTAACTGAAG +AAGCAGAGTTAGAGCTAGCAGAGAACAGGGAAATTCTAAAAGAACCAGTACATGGAGCAT +ATTATGACCCAGCAAAAGACTTAATAGCTGAAATACAGAGACAGGGGTATGACCAATGGA +CATATCAAATTTACCAAGAACCATTCAAAAACCTGAAAACAGGGAAATATGCAAAAATGA +GGACTGCCCACACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCTATGG +AAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCATCCAAAAAGAAACAT +GGGAGACATGGTGGACAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTA +ATACCCCTCCCCTAGTAAAATTATGGTACCAGCTAGAGAAAGAACCCATAGCAGGAGCAG +AAACTTTCTATGTAGATGGAGCAGCTAATAGGGAAACCAAAATAGGAAAAGCAGGGTATG +TTACTGACAGAGGAAGGCAGAAAATTGTTACTCTAAGTGAAACAACAAATCAGAAGACTG +AATTACAAGCAATTCAGCTAGCTTTGCAAGATTCAGGATCAGAAGTAAACATAGTAACAG +ACTCACAGTATGCATTAGGGATCATTCAAGCACAACCAGATAAAAGTGAATCAGAATTAG +TCAACCAAATAATAGAACAATTAATAAAAAAGGAAAGGGTCTACCTGTCATGGGTACCAG +CACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTAAGTAGTGGAATCAGGA +AAGTACTGTTTCTAGATGGAATAGATAAGGCTCAAGAAGAGCATGAAAAGTATCACAGCA +ATTGGAGAGCAATGGCTAGTGGGTTTAATCTGCCACCCATAGTAGCAAAAGAAATAGTAG +CCAGCTGTGATAAATGTCAGCTAAAAGGGGAAGCCATACATGGACAAGTAGACTGTAGTC +CAGGGATATGGCAACTAGATTGTACACACTTAGAAGGAAAAGTCATCCTGGTAGCAGTCC +ATGTAGCCAGTGGCTACATAGAGGCAGAGGTCATCCCAGCGGAAACAGGACAAGAAACAG +CATACTATATACTAAAATTAGCAGGAAGATGGCCAGTCAAGGTAATACATACAGACAATG +GCAGTAATTTCACTAGTGCTGCAGTTAAGGCAGCCTGTTGGTGGGCAGGTATCCAACAGG +AATTTGGGATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCCATGAATAAAGAAT +TAAAGAAAATCATAGGGCAGGTAAGAGATCAAGCTGAACACCTTAAGACAGCAGTACAAA +TGGCAGTATTCATTCACAATTTTAAAAGAAGAGGGGGGATTGGGGGGTACAGTGCAGGGG +AAAGAATAATAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACGAATTA +CACAAATTCAAAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCTATTTGGAAAGGAC +CAGCCAAACTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGACAACAGTGACATAA +AAGTAGTACCAAGGAGGAAGGTAAAAATCATTAAGGACTATGGAAAACAGATGGCAGGTG +CTGATTGTGTGGCAGGTAGACAGGATGAAGATTAGAACATGGAATAGTTTAGTAAAGCAC +CATATGTATGTTTCAAGGAGAGCTAATGGATGGTTTTACAGACATCATTATGAAAGCAGA +CATCCAAAAGTAAGTTCAGAAGTACACATACCATTAGGAGAGGCTAGATTAGTAATAAAA +ACATATTGGGGTTTGCAACCAGGAGAAAGAGCTTGGCATTTGGGTCATGGAGTCTCCATA +GAATGGAGATTGAGAAAATACAGCACACAAGTAGACCCTGGCCTGGCAGACCAGCTAATT +CATATGCACTATTTTGATTGTTTTGCAGAATCCGCCATAAGAAAAGCCATATTAGGACAC +ATAGTTACCCCTAGGTGTGATTATCAAGCAGGACATAACAAGGTAGGATCTCTACAATAC +TTAGCACTGACAGCATTGATAAAGCCAAAAAGGAGAAAGCCACCTCTGCCTAGTGTTAGA +AAATTAGTAGAGGATCGATGGAACAACCTCCAGAGGATCAGGGACCGCAGAGGGAACCAT +ACAATGAATGGACACTAGAGATTCTAGAAGAACTCAAGCAGGAAGCTGTCAGACACTTTC +CTAGACCATGGCTCCATAGCTTAGGGCAGCACATCTATGAAACCTATGGGGATACTTGGA +TAGGAGTTGAAGCAATAATAAGAATACTGCAACAATTACTGTTTATTCATTTCAGAATTG +GGTGCCGGCATAGCAGAATAGGAATCTTGCGACAAAGGAGAGCAAGAAATGGAGCCGGTA +GATCCTAACCTAGAGCCCTGGAACCATCCAGGAAGTCAGCCTAAAACTCCTTGTAATAAG +TGCTATTGTAAACAGTGTAGCTACCATTGTCTAGTTTGCTTTCAGACAAAAGGCTTAGGC +ATTTCCTATGGCAGGAAGAAGCGGAGACGGCGACGAAGCGCTCCTCCAAGCAGTGAGGAT +CATCAAAATCCTATATCAAAGCAGTAAGTATATGTAATGTTAGATTTAATAGGAAAAGTA +GGTTATAGAATAGGGGTAGGAGCATTAATAGTAGCATTAATTATAGCAATAGTTGTGTGG +ACCATAGTATATATAGAATATAGGAAATTGTTAAGACAAAAAAGGATAGACTGGTTAATT +AAAAGAATTAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGAGATAATGAGGAA +TTATCAACAATGGTGGACATGGGGCATCTTAGGCTGTTGGATGTTATTGACTTGTAGTGT +GGTGGGGAACTTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAAGAAGCAAAAGC +TACTCTATTTTGTGCATCAGATGCTAAGGCATATGAGAAAGAAGTGCATAATGTCTGGGC +CACACATGCCTGTGTACCCACAGACCCCAATCCACAAGAAATGGTTTTGAAAAATGTAAC +AGAAAATTTTAATATGTGGAAAAATGACATGGTGGATCAGATGCATGAGGATATAATCAG +TTTATGGGATCAAAGTTTAAAACCATGTGTAAAGTTGACCCCACTCTGTGTCACTTTAAA +TTGTACAGATGATATTAAAAGTAATGTTACCTTCAATAACAGCATGATTGGAGAAATAAA +AAATTGCTCTTTCAATACAACCACAGAAATAAGAGATAAGAAACAGAAAGCGTATGCACT +ATTTTATAGAAGTGATGTAGTGCTACTTAATAAGGATAGCAATAGCAATAGCTCTGGTGA +GTACATATTAATAAATTGCAATTCCTCAACCATAACCCAAGCTTGTCCAAAGGTCTCTTT +TGACCCAATTCCTATACATTATTGTGCTCCAGCTGGTTATACGATTCTAAAGTGTAATAA +TAAGACATTCAATGGGACAGGACCATGCAATAATGTCAGTACAGTACAATGTACACATGG +AATTAAGCCAGTAGTGTCAACTCAACTACTGTTAAATGGTAGCCTAGCAGAAGGGGAGAT +AATAATTAGGTCTGAAGATTTGACAAAAAATGCCAAAACAATAATAGTACACCTTAAGGA +ATCTGTAGGAATTATGTGTACAAGACCCAACAATAATACAAGAAAGAGTATAAGGATAGG +ACCAGGGCAAGCATTCTATGCAACAAATGGCATAATAGGAGACATAAAACAAGCACATTG +TAACATCAGTGGAGATGAATGGAACAAAACTTTAAAAGGGGTAAGGGAAAAATTAAAGGA +ACATTTCCCTAATAGAACAATAAAATTTGAACCATCCTCAGGAGGGGACCTAGAAATTAC +AACACATAGTTTTAATTGTGGAGGGGAATTTTTCTATTGTAATACAACAGCATTGTTTGA +TGAAAGTATTTTTAATAAAAGTGATTCAAACAGCACCATCACCCTCCCATGCAGAATAAA +GCAAATTATAAACATGTGGCGGAAAGTAGGACGAGCAATGTATGCCCCTCCCATTGAAGG +AAACATAACATGTAAATCAAATATCACGGGACTATTATTGGAACGTGATGGAGGAAAGGT +AAATAATAAAACCGAGATATTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGAAG +TGAATTATATAAATATAAAGTGGTAGAACTTAAGCCATTGGGAGTAGCACCCACTAAGGC +AAAAAGGATAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGACTAGGAGCTGTGTTCTTTGG +GTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGC +CAGACAATTGTTGTCTGGTATAGTGCAGCAGCAAAGCAATTTGCTGAGAGCTATAGAGGC +GCAACAGCATATGTTGCAACTCACGGTCTGGGGCATTAAGCAGCTCCAGGCAAGAGTCCT +GGCTATGGAAAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAA +ACTCATCTGCACCACTACTGTGCCTTGGAACTCCAGTTGGAGTAATAAATCTGAAGCAGA +GATTTGGAATCACACGACCTGGATGCAGTGGGATAGAGAAATCAATAATTACACAGAAAC +AATATACAAGTTGCTTGAAGTCTCGCGGAACCAGCAGGAGCAAAATGAAAAGGATTTATT +AGCACTGGACAAGTGGCAAAATCTGTGGAGTTGGTTTGACATAACAAATTGGCTGTGGTA +TATAAAAATATTTATAATGATAGTAGGAGGCTTGATAGGTTTGAGAATAATTTTTGCTGT +GCTTTCTATAGTGAAAAGAGTTAGGCAGGGATACTCACCTTTGTCGTTTCAGACCCTTAT +CCCAAACCCGAGGGGACCCGACAGGCTCGGAAGAATCGAAGAAGAAGGTGGAGAGCAAGA +CAGAAACAAATCCATTCGATTGGTGAACGGATTCTTATCACTTGTCTGGGACGACCTGCG +GAGCTTGTGCCTCTTCAGCTACCACCAATTGAGAAACTTCATATTGGTAACAGCGAGAGC +AGTGGAACTTCTGGGACGCAGCAGCCTCAGGGGACTACAGAGAGGGTGGGAAGCCCTTAA +GTATCTGGGAGGTCTTGTGCAATATGGGGGTCTGGAGCTAAAAAAGAGTGCTATTAGGCT +GCTTGATCGCATAGCAATAGCAGTAGCTGAAGGAACAGATAGGATTATTGAAACAATACA +AATAATCTGGAGAGCTGTCTGCAACATACCTAGAAGAATAAGACAGGGCTTGGAAGCAGC +TTTGCTATAAAATGGGAAGCAAGTGGTCAAAAAGCAGCATAGTTGGATGGCCTAGTGTAA +GAGAAAGAATAAGACAAACTGAGCCAGCGGCAGAGGGAGTAGGAGCAGCGTCTCAAGACT +TAGATAAATATGGGGCACTCACAAGCAGCAACACAGCCCAAAGTAATGCTAATTGTGCCT +GGCTACAAGCACAAGAGGAGGAAGGAGGAGTAGGCTTTCCAGTCAGACCTCAGGTGCCTT +TAAGACCAATGATGTATAAGGCAGCATTCGATCTCAGCTTCTTTTTAAAAGAAAAGGGGG +GACTGGAAGGGTTAATTTGGTCTAAGAAAAGACAAGAAATCCTTGATTTGTGGGTCTATC +ACACACAAGGCTACTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATACC +CACTGACCTTTGGATGGTGTTTCAAGCTAGTGCCAGTTGACCCAAGTGAAGTAGAAGAGG +CCAACAAAGGAGAGAACAACTGTTTACTACACCCTATGAGCCAGCATGGAATGGAGGATG +AAGAAAGAGAAGTATTAAAGTGGCAGTTTGACAGCAGTCTAGCACGCAGACACCTGGCCC +GTGAGAAACATCCGGAGTGGTACAAAGACTGCTGACACAGAAGGGACTTTCCGCCTGGGA +CTTTCCACTGGGGCGTTCCAGGGGGTGTGGTCTGGGCGGGACTGGGGAGTGGTCAACCCT +CAGATGCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGGTAGACCAGA +TCTGAGCCTGGGAGCTCTCTGGCTATCTAGGGAACCCACTGCTTAAGCCTCAATA +>C.ZA.2000.0.1214MB.AY463236 AY463236 +AGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCATTCGT +GGTAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGTGAAAGTAAGA +CCAGAGGAAATCTCTCGACGCAGGACTCGGCTTGCTGAAGTGCACTCGGCAAGAGGCGAG +AGCGGCGGCTGGTGAGTACGCCAAAATTTATTTGACTAGCGGAGGCTAGAAGGAGAGAGA +TGGGTGCGAGAGCGTCAATACTAAGAGGGGGGAAATTAGATACATGGGAAAAAATCAGGT +TAAGGCCAGGGGGAAAGAAACGTTACAGGCTAAAACACCTAGTATGGGCAAGCAGGGAGC +TGGAAAGATTTGCACTTAACCCTGGCCTTTTAGAGACAGCAGACGGCTGTAAACAAATAA +TACAACAGCTACAACCAGCTCTTCAGACAGGAACAGAGGAACTTAAATCATTATTTAACA +CAGTAGCAACTCTCTATTGTGTACATGCAAAGATAGAGGTAAAAGGCACCAAGGAAGCCT +TAGACAAGATAGAGAAAGAACAACGCAAAAGTCAGCAAAAAACACAGCAAGCGGAAGCGG +CTGACAGAGGACAGAGTAGTCAAAATTATCCTATAGTGCAGAATCTCCAAGGGCAAATGG +TACACCAGGCCATATCACCAAGAACTTTGAATGCATGGGTAAAAGTGATAGAAGAGAAGG +CTTTCAGCCCAGAGGTAATACCCATGTTTACGGCATTATCAGAAGGAGCTACCTCACAAG +ATTTAAACACCATGTTAAATACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAG +ATACCATCAATGAGGAGGCTGCAGAATGGGATAGGTTACATCCAGTACATGCAGGGCCTA +TTGCACCAGGCCAAATGAGAGAACCAAGGGGAGGTGACATAGCAGGAACTACTAGTACCC +TTCAGGAACAAATAGCATGGATGACAAGTAACCCACCTATTCCAGTAGGAGACATCTATA +AAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGTCCTGTCAGCATTT +TGGACATAAAACAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTTTAAAA +CTTTAAGAGCTGAACAATCCACACAAGAGGTAAAAAATTGGATGACAGACACCTTGTTGG +TCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAGAGCATTAGGACCAGCGGCTTCAT +TAGAAGAAATGATGACAGCATGCCAAGGAGTGGGAGGACCTAGCCACAAAGCAAGAGTTT +TAGCTGAGGCAATGAGCCAAGCAGGCAATACAAATATAATGATGCAGAGAGGCAACTTTA +AAGGCCCTAGAAGAATTATCAAATGTTTCAACTGTGGCAAGGAAGGGCACATAGCCAGAA +ATTGCAAGGCCCCTAGGAAAAAAGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGA +AAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAAGGGAAGGC +CAGGGAATTTCCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAGCTTCAGGT +TCGAGGAGACAACCCCTGCTCCGAAGCAGGAGCAGAAAGACAAGGAGCCACCCTTAGCTT +CCCTCAAATCACTCTTTGGCAACGACCCCTTGTCTCAATAAAAGTAGGGGGTCAGACAAA +GGAAGCCCTCTTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAAATTTGCCAGG +AAAATGGAAACCAAAAGTGATAGGAGGAATTGGAGGTTTTATCAAAGTAAGGCAGTATGA +TCAAATAGTTATAGAAATTTGTGGAAAAAAGGCTATAGGTTCAGTATTAGTGGGACCTAC +ACCTGTCAACATAATTGGAAGAAATATGTTGACTCAGCTTGGATGCACACTAAATTTTCC +AATTAGTCCCATTGAAACTGTACCAGTGAAATTAAAGCCAGGAATGGATGGCCCAAAAGT +TAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGCAATTTGCGAAGAAAT +GGAGAAGGAAGGAAAAATTACAAAAATTGGGCCTGAAAATCCATATAATACTCCAGTATT +TGCCATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAA +TAAAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCACACCCAGCAGGGTTAAA +ACAGAAAAAATCAGTGACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGA +TGAGAATTTCAGGAAGTACACTGCATTCACCATACCTAGTATAAACAATGAAACACCAGG +AATTAGATATCAATATAATGTGCTTCCACAAGGATGGAAAGGATCACCAGCAATATTCCA +AAGTAGCATGACAAAAATCTTAGAGCCCTTTAGGACAAGAAACCCAGACATAGTTATCTA +TCAATATATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAA +AATAGAGGAGTTAAGAGAACATTTATTGAAATGGGGACTCACCACTCCAGACAAGAAACA +TCAAAAAGAGCCCCCATTTCTGTGGATGGGGTATGAACTCCATCCTGATAAGTGGACAGT +ACAGCCTATACATCTGCCAGAAAAAGAGAGCTGGACTGTCAATGATATACAGAAGTTAGT +GGGAAAATTAAACTGGGCGAGTCAGATTTACGCAGGGATTAAAGTAAAACAACTATGTAA +GCTCATTAGAGGAACCAAAGCACTAACAGACATAGTACCACTGACTGAAGAGGCAGAATT +AGAATTGGCAGAAAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGATCC +ATCAAAAGACTTAATAGCTGAACTACAGAAACAGGGACATGACCAGTGGACATATCAAAT +TTACCAAGAACCATTTAAAAATCTGAAAACAGGGAAGTATGCAAGAATGAGGACTGCCCA +CACTAATGATGTAAAACAGTTAACAGAGGCAGTGCAAAAGATAACTATGGAAAGTATAGT +AATATGGGGAAAGACTCCTAAATTTAGACTACCCATCCAAAAAGACACATGGGAGACATG +GTGGACAGACTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCC +CCTAGTAAAACTATGGTACCAGCTAGAGAAGGAACCCATAGCAGGAGCAGAAACTTTCTA +TGTAGATGGAGCAGCTAATAGGGATACTAAAATAGGAAAAGCAGGGTATGTTACTGACAG +AGGAAGACAGAAAATTGTTCCTCTAACTGAAACAACAAATCAGAAGACTGAACTGCAAGC +AATTCAGATAGCTTTGCAGGATTCAGGACCAGAAGTAAACATAGTAACAGATTCACAGTA +TGCATTAGGCATCATTCACGGACTACCAGATAAGAGTGAATCAGAGTTAGTTAATCAAAT +AATAGAACAATTGATAAACAAGGAAAGAGTCTACCTGTCATGGGTACCAGCACATAAAGG +AATTGGAGGAAATGAGCAAGTAGACAAATTAGTAAGTAGGGGAATTAGAAAAGTGCTGTT +TCTAGATGGGATAGATAAGGCTCAAGAAGACCATGAAAAACATCACAGCAATTGGAGAGC +AATGGCTAATGAGTTTAATCTGCCACCCATAGTAGCAAAAGAAATAGTAGCTAGCTGTGA +TAAATGTCAGATAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGGATATG +GCAATTAGATTGTACACATTTAGAAGGAAAAGTCATTCTGGTAGCAGTCCATGTAGCCAG +TGGCTACATAGAAGCAGAGGTATTCCAGCAGAAACAGGACAAGAAACAGCATACTATATA +CTAAAATTAGCAGGAAGATGGCCAGTCAAAGTAATACACACAGACAATGGCAGTAATTTC +ACCAGTACTGCAGTAAAGGCAGCTCTGTTGGTGGGCAGGTATCCAACAGGAATTTGGGAT +TCCCTACAATCCCCAAAGTCAGGGAGTGGTAGAATCCATGAATAAAGAATTGAAGAAAAT +CATAGGGCAAGTAAGAGATCAAGCTGAGCACCTTAAGACAGCAGTACAAATGGCAGTATT +CATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAAT +AGACATGATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATCATAAAAATTCA +AAATTTTCGGGTTTATTACAGAGACAGCAGAGACCCTATTTGGAAAGGACCAGCCAAACT +ACTCTGGAAAGGTGAAGGGGCAGTAGTTATACAAGATAGCAGTGACATAAAGGTGGTACC +AAGGAGGAAAGTAAAAATCATTAAGGACTATGGAAAACAGATGGCAGGTGCTGATTGTGT +GGCAAGTAGACAGGATGAAGATTAGAACATGGAATAGTTTAGTAAAGCACCATATGTATA +TTTCAAGGAAAGCTAAGGGATGGTTTTACAGACATCATTATGAAAGCAGGCATCCAAAAG +TAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAGATTAGTAATAAAAACATATTGGG +GTTTGCAGACAGGAGAAAGAGAGTGGCATTTGGGTCATGGAGTCTCCATAGAATGGAGAT +GGAAAAGATATAGCACACAGGTAGACCCTGGCCTGGCAGACCAACTAATTCATATGCATT +ATTTTGATTGTTTTGCAGACTCTGCCATAAGACAAGCCATCTTAGGACATATAGTTAGCC +CTAGGTGTAACTATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTGA +CAGCATTGATCAAGCCAAAAAAGATAAAGCCACCTCTGCCTAGTGTTCAGAAATTGGTAG +AGGATAGATGGAACAAGCCCCAGAAGACCAGGGGCCGCAGAGGGAACCATACAATGAATG +GGCACTAGAGCTTTTAGAAGATCTTAAGCAGGAAGCTGTCAGACACTTTCCTAGACCATG +GCTCCATAGCTTAGGACAGCACATCTATGAAACCTATGGGGATACTTGGACGGGAGTCGA +AGTGATAATAAGAATTCTGCAACAATTACTGTTTATTCATTTCAGAATTGGGTGCCAGCA +TAGCAGAATAGGCATTTTGCGACAAAGAAGAGCAAGAAATGGAGCCAATAGATCCTAAAC +TAGAACCCTGGAAACATCCAGGGAGTCAGCCTAAAACTGCTTGCAATAGGTGTTATTGCA +AACGCTGCTGCTATCATTGTCTAGTTTGCTTTCAGACAAAAGGCTTAGGCATTTCCTATG +GCAGGAAGAAGCGGAGACAGCGACGAAGCGCTCCTCCAAGCAGTGAAGATCATCAAGATC +CTATACCAAAGCAGTAAGTACTAAATGGTAGATGTAATGTTAAATTTACTAGCAAGAGTA +GATTATAGATTAGGAGTAGGAGCATTGATAGTAGCACTAATTATAGCAATAGTTGTGTGG +ATCATAGCATATATAGAATATAAGAAACTGGTAAGGCAGAGAAGAATAGACAAGCTAGTT +GAAAGAATTAGGGAAAGAGAAGAAGACAGTGGCAATGAGAGTGATGGGGATGTTGAGGAA +TTGTCAACAATGGTGGATATGGAGCATCTTAGGCTTATGGATGTTAATAATTTGTAATGG +GGACAATTTGTGGGTCACTGTCTACTATGGGGTACCTGTGTGGAAAGAAGCACAAACTAC +TCTATTTTGTGCATCAGATGCTAAAGGATATGAAAAAGAAGTGCATAATGTCTGGGCTAC +ACATGCTTGTGTACCCACAGACCCCAACCCACAAGAAATGGTTTTGGCAAATGTAACAGA +AAATTTTAATATGTGGAAAAATGACATGGTAGATCAGATGCATGAGGATATAATCAGTTT +ATGGGATCAAAGCTTAAAGCCATGTGTAAAGTTGACCCCACTCTGCGTCACTTTAAACTG +TACTAATGTCACCTGTACTGATAACAGCACCTGTAAGGGTAACACAAGTGAAATAAAAAA +TTGCTCTTTCGACACAACCTCAGAAATGGAAGATAAGAAGAAAAGACAGAATGCACTTTT +CTATGCACTTGATATAGTCCCACTTAATAACAATAGTAGTGAATATAGAATAATAAGTTG +TAATACCTCAACCATAGCACAAGCCTGTCCAAAGATCTCTTTTGACCCAATTCCTATACA +TTATTGTGCTCCAGCTGGTTATGCGATTCTAAAGTGTAATAATAAGACATTCAATGGAAC +AGGACCATGCAATAATGTCAGCACAGTACAATGTACACATGGAATTAAGCCAGTGGTATC +AACTCAGCTACTGTTAAATGGCAGCCTAGCAGAAGAAGAGATAATAATTAGATCTGAAAA +TATTACAGACAATGTCAAAACAATAATAGTACACCTTAAGGATGCTGTAGAAATTGTGTG +TATAAGACCCGGCAATAATACAAGAACCAGTGTGAGGATAGGCCCAGGACAGACATTCTA +TGCAACAGGAGACATAATAGGAGATATACGACAAGCACATTGTAACATTACTGAAAGCAA +GTGGAATAACACTTTAAAAAAGGTAACAGGAAAATTAGGAGAATACTTCCCTAATCGAAC +AATACAATTTGCACCATCCTCAGGAGGAGATTTAGAAATTACAACACATAGCTTTAATTG +TGGAGGAGAATTTTTCTATTGCGATACAGCAGCCCTGTTTAATGGCACATATAATGGCAC +ATATGGTAATGAGACTTCAAACATCACACTCCAATGCAGAATAAAACAGATGATAAACAT +GTGGCAGGGGGTAGGACGAGCAATGTATGCTCCTCCCATTGCAGGAAACATAACATGTAG +ATCGAATATCACAGGACTACTATTGACACGTGATGGAAGTAACGATACTGGGCCAGAGAT +ATTCAGACCTGGAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATATAAATACAA +AGTGGTAGAAATTAAGCCATTAGGAATAGCACCCACTAAAGCAAAAAGGAGAGTGGTGGA +GAGAGAGAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTTGGGTTCTTAGGAGCAGCAGG +AAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGG +TATAGTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCGCAACAGCATATGTTGCA +ACTCACAGTCTGGGGCATTAAACAGCTCCAAGCAAGAGTCCTGGCTATAGAAAGATACCT +AAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACCAC +TGTATCTTGGAACTCCAGTTGGAGTAATAAAACTTACGATGAAATTTGGGAAAACATGAC +CTGGATGCAGTGGGAGAGAGAAATCAGTAATTACACAAACACAATATATAGGTTGCTTGA +AGACTCGCAAAACCAGCAGGAAAAAAATGAACAAGATTTACTAGCATTGGACAGTTGGGC +AAGTCTGTGGAATTGGTTTAGCATAACAAAATGGCTGTGGTATATAAAAATATTCATAAT +GATAGTAGGAGGCTTGATAGGTTTAAGAATAATTTTTGCTATACTCTCTATAGTAAATAG +AGTTAGGCAGGGATACTCACCTTTGTCGTTTCAGACCCTTACCCCAAACCCGAGGGAACT +CGACAGGCCCGAAAGAATCGAAGAAGAAGGTGGAGAGCAAGACAGAGACAGATCCATACG +ATTAGTGAGCGGATTCTTGTCACTTGCCTGGGACGATCTGCGGAGCCTGAGCCTCTTCAG +CTACCGCCAATTGAGAGACTTCATATTGGTGATAGTGAGAGTAGTGGAACTTCTGGGACG +CAGCAGTCTCAGGGGACTACAGAAGGGGTGGGAAACCCTTAAGTATTTGGGAAGTCTTGT +ACAGTATTGGGGTTTAGAGTTAAAAAGGAGTGCTATTAGTCTGCTTGATACCATAGCAAT +AGTAGTAGCTGAGGGAACAGATAGGATTATAGAATTAATACAAAGAATTTGGAGAGCTAT +CTGCCACATACCTACAAGAATAAGACAGGGCTTTGAAGCAGCTTTGCAATAAAATGGGGG +GCAAGTGGTCAAAAAGCAGTATAGTTGGATGGCCTGCTGTAAGAGAAAGAGTCAGAAGAA +CTCAGACAGGAACAAGAATCAGAAGAACTCAGACAGCAGCAGAGGGAGTAGGAGCAGCAT +CTCAAGACCTAGATAAACATGGGGCACTTACAACCAGTAACACAGCCACTAACAATGCTG +CTTGTGCCTGGCTGGAAGCACAAGAGGAGGAAGAAGAAGTAGGTTTTCCAGTCAGACCTC +AGGTACCTCTAAGACCAATGACTTATAAGGCAGCAGTTGATCTCAGCTTCTTTTTAAAAG +AAAAGGGGGGACTGGAAGGGTTAATTTACTCCAAGAAAAGGCAAGATATCCTTGATTTAT +GGGTCTATAACACACAAGGTTTCTTCCCTGATTGGCAAAACTACACACCGGGACCAGGGG +TCAGATTTCCACTGACCTTTGGATGGTGCTTCAAGCTAGTGCCTGTTGACCCAAGGGAAG +TAGAAGAGGCCAATGAAGGAGAAAACAACTGTTTGCTACACCCTATGAGCCAGCAGGGAA +TGGAGGATGATGACAGAGAAGTACTAATGTGGAAGTTTGACAGTCTCCTAGCACGCAGAC +ACATGGCCCGCGAGCTACATCCGGAGTATTACAAAGACTGCTGACACAGAAGGGACTTTC +CGCTGGGGCTTTCCACTGGGGCGTTCCGGGAGGTGTGGTCTGGGCGGGACTGGGGAGTGG +CCAGCCCTTGAATGCTGCATATAAGCAGCTGCTTTTCGCCTGTACTGGGTCTCTCTAGGT +AGACCAGATCTGAGCCTGGGAGCTCTCTGGCTATCTAGGGAACCCACTGCTTAAGCCTCA +ATAAAGCTTGCCTTGAGTGCTTA +>C.BR.2004.0.04BR021.AY727523 AY727523 +AAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACGCCTTT +CGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGTAAG +ACCAGAGGAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGTGCACTCGGCAAGAGGCGA +GAGCGGCGACTGGTGAGTACGCCATTTTTATTTGACTAGCGGAGGCTAGAAGGAGAGAGA +TGGGTGCGAGAGCGTCAGTATTAAGAGGCGAAAAGTTAGATAATTGGGAAAAAATTAAGT +TAAAGCCAGGGGGAAAGAAATGCTATATGATGAAACACCTAGTCTGGGCAAGCAGGGAGC +TGGAAAGATTTGCACTTGACCCTGGCCTTTTAGAGACATCAGAAGGCTGTAAACAAATAA +TAAGGCAGCTACAACCAGCTCTTCAGACAGGAACAAAGGAACTTATATCATTATATAACA +CAGTTGCAACTCTCTATTGTGTACATGCAAAGATAGAGATACGAGACACCAAGGAAGCCT +TAGACAAAATAAAGGAAGAACAAAACAAAAGTCAGCAAAAAACACAGCAGGCAGAAGCGG +CTGACAAAGGAAAGGTCAGTCAAAATTATCCTATAGTGCAGAATATCCAAGGGCAAATGG +TACACCAGCCCATATCAGCTAGAACTTTGAATGCATGGGTAAAGGTAATAGAAGAGAAGG +CTTTCAGCCCAGAGGTAATACCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAG +ATTTAAACACCATGTTAAATACAGTGGGGGGACACCAAGCAGCCATGCAAATGTTAAAAG +ATACCATCAATGAAGAGGCTGCAGAATGGGATAGATTACATCCAGTGCATGCAGGGCCTG +TCGCACCAGGCCAACTGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACCAGTACCC +TTCAGGAACAAATAGCATGGATGACAAATACCCCACCTGTCCCAGTAGGAGACATCTATA +AAAGATGGATAATTCTGGGGTTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTT +TGGACATAAAACAAGGGCCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTTTAAAT +GCTTAAGAGCAGAACAAGCTACTCAAGATGTAAAAAATTGGATGACAGATACCTTGTTGG +TCCAAAATGCGAACCCAGATTGTAAGACCATTTTAAAAGCATTAGGGACAGGGGCTACAT +TAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCACAAAGCAAGAGTGT +TGGCTGAGGCAATGAGCCAAGTAAACAATACAAACATAATGATGCAGAGAAGCAATTTTA +AGGGCCCTAAAAGAACTATCAAATGCTTCAACTGTGGTAAGGAAGGGCACTTAGCCAGAA +ATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGA +AAGACTGTACTGAGAGGCAGGCTAATTTTTTAGGGAGAATTTGGCCTTCCCACAAGGGGA +GGCCAGGAAATTTCCCCCAGAGCAGACTAGAGCCAACAGCCCCACCAGAAGAGAGCTTCA +GGTTCGAGGAGACAACCCCCTCTCCGAAGCAGGAGCCGAAAGACAGGGAACCCTTAACTT +CCCTCAAATCACTCTTTGGCAGCGACCCCTCGTTACAATAAAAGTAGGGGGACAGCTAAA +GGAGGCTCTTTTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAAATTGCCAGG +AAATTGGAAACCAAAAATGATAGGAGGAATTGGGGGTTTTATCAAAGTAAGACAGTATGA +TCAAATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTACTAGTAGGACCTAC +ACCTGTCAACATAATTGGAAGAAACATGTTGACTCAGCTTGGATGTACACTAAATTTTCC +AATCAGTCCCATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGGT +CAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGCAATTTGTGAAGAAAT +GGAAAAGGAAGGAAAAATTACAAAAATTGGTCCTGAAAATCCCTATAACACTCCAGTATT +TGCTATAAAAAAGAAGGACAGTACTAAGTGGAGAAAATTAGTAGATTTCAGGGAACTCAA +TAAAAGAACTCAAGACTTTTGGGAAGTTCAATTAGGGATACCACACCCATCAGGGTTAAA +AAAGAAAAAATCAGTGACAGTACTGGATGTGGGGGATGCATATTTTTCAGTACCTTTAGA +TGAAAACTTTAGAAAATATACTGCATTTACCATACCTAGTATAAACAATGAAACACCAGG +GGTTAGATATCAATATAATGTGCTTCCACAGGGATGGAAAGGATCACCATCAATATTCCA +GAGTAGCATGACAAGAATCTTAGAGCCCTTTAGGGCACAAAATCCAGAAATAGTTATATA +TCAATATATGGATGACTTGTATGTAGGATCTGACTTAGAAATAGGGCAACATAGAGCAAA +AATAGAGGAGTTAAGAGAACATCTATTGAAGTGGGGATTCACCACACCAGACAAGAAACA +TCAGAAAGAACCCCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGT +ACAGCCTATACAGCTGCCAGAAAAGGATAGCTGGACTGTCAATGATATACAGAAGTTAGT +GGGAAAATTAAACTGGGCAAGTCAGATTTACCCAGGAATTAAAGTAAGACAACTGTGTAA +ACTCCTTAGGGGAGCCAAAGCATTAACAGACATAGTACCACTGACTGAAGAAGCAGAATT +AGAATTGGCAGAGAACAGGGAAATTCTAAAAGAACCAGTACATGGAGTATATTATGACCC +ATCAAAAGACTTAATAGCTGAAATACAGAAACAGGGGCAGGACCAATGGACATATCAAAT +TTACCAAGAACCATTTAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGTACTGCCCA +CACTAATGATGTAAGACAGTTAACAGGGGCAGTGCAAAAAATAGCCCAGGAATGCATAGT +AATATGGGGAAAAACTCCTAAATTTAGATTACCCATCCAGAAAGAAACATGGGAGGCATG +GTGGACAGACTATTGGCAAGCCACATGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCC +CCTAGTAAAGTTATGGTACCAGCTGGAGAAAGAACCCATAGCAGGAGCAGAAACTTTCTA +TGTAGATGGAGCAGCTAATAGGGAAACTAAAATAGGAAAAGCAGGGTATGTTACTGACAG +AGGAAGGCAGAAAATTGTTCCTCTAACTGAAACAACAAATCAAAAGACTGAGTTACAAGC +AATTCAACTAGCTTTACAGGACTCAGGATCAGAAGTAAACATAGTAACAGACTCACAGTA +TGCATTAGGAATTATTCAAGCACAACCAGACAAGAGTGAGTCAGAATTAGTCAATCAAAT +AATAGAACAGTTAATAAAAAAGGAAAGGGTCTACCTGTCATGGGTACCAGCACACAAAGG +AATTGGGGGAAATGAACAAGTAGATAAATTAGTAAGTAATGGAATCAGGAAAGTGCTGTT +TCTAGATGGAATAGATAAAGCTCAAGAAGAGCATGAAAAATATCACAGCAATTGGAGAGC +AATGGCTAGTGAGTTTAATCTGCCCCCCGTAGTAGCAAAAGAAATAGTAGCTAGCTGTGA +TAAATGTCAGCTAAAAGGGGAAGCCATACATGGACAAGTAGACTGTAGTCCTGGAATATG +GCAATTAGATTGTACCCATTTAGAAGGAAAAATCATCCTGGTAGCAGTCCATGTGGCCAG +TGGATACATAGAAGCAGAGGTTATCCCAGCAGAAACAGGACAAGAAACAGCATACTTTAT +ACTCAAATTAGCAGGAAGATGGCCAGTCAAAATAATACATACAGACAATGGCAGTAATTT +CACCAGTAATACAGTTAAAGCAGCCTGTTGGTGGGCAGGTATCCAACAGGAATTTGGAAT +TCCCTACAATCCCCAAAGTCAGGGAGTAGTAGAATCAATGAATAAAGAGTTAAAGAAAAT +CATAGGACAAGTAAGAGATCAAGCTGAGCACCTTAAGACAGCAGTACAAATGGCAGTATT +CATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAAT +AGACATAATAGCAACAGACATACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCA +AAATTTTCGGGTTTATTACAGAGACAGCAGAGATCCTATTTGGAAAGGACCAGCCAAACT +ACTCTGGAAAGGTGAAGGGGCAGTAGTACTACAAGATAACAGTGACATAAAGGTAGTACC +AAGGAGGAAAGTAAAAATCATTAAGGACTATGGAAAACAGATGGCAGGTGCTGATTGTGT +GGCAAGTAGACAGGATGAAGATTAGAACATGGAATAGTTTAGTAAAGCACCACATGTATA +GGTCAAAGAGAGCTAGTGGATGGTATTATAGACATCATTATGAAAGCAGACATCCAAAAA +TAAGTTCAGAAGTACACATCCCATTAGGGGAGGCTAGATTAGTAATAACAACATATTGGG +GGTTGCAAACAGGAGAAAGAGATTGGCATTTGGGTCATGGAGTCTCCATAGAGTGGAGAC +TGAGAAAATATAGCACACAAGTAGACCCTGGCCTGGCAGACCAACTAATTCATGTGCATT +ATTTTGATTGTTTTGCAGACTCTGCCATAAGGAAAGCCATATTAGGACATAGAGTTAGCC +CTAGGTGTGACTATCAAGCAGGACATAATAAGGTAGGATCTCTACAATACCTGGCACTGA +CAGCATTGATAAAACCAAAAAAGACAAAGCCACCTCTGCCTAGTGTTAGCAAATTAGTAG +AGGATAGATGGAACAAGCCCCAGAAGACCAGGGACCGCAGAGGGAACCATTCAATGAATG +GACACTAGAACTTTTAGAGGAACTAAAACGGGAAGCTGTCAGACACTTTCCTAGACCATG +GCTTCATAGCTTAGGACAATATATCTATGAAACCTATGGGGATACTTGGACGGGAGTGGG +AGCTATAATAAGAATTCTGCAACAACTACTGTTTGTCCATTTCAGAATTGGGTGCCAGCA +TAGCCGAATAGGCATTATAAGACAGAGAAGAGCAAGAAATGGAGCCAGTAGACCCTAACC +TAGAGCCCTGGAACCATCCAGGAAGTCAGCCTAAAACCCCTTGCAATAGGTGCTATTGTA +AAAGCTGCAGCTATCACTGTCAAGTTTGCTTTCTGACAAAAGGCTTAGGCATTTCCTATG +GCAGGAAGAAGCGGAGACAACGACGAAGCGCTCCTCCAAGCAGTGAGGATCATCAAAATC +TTATATCAAAGCAGTAAGTATTCAGTAGTAGATGCAAATATTCAGTAGTAGATGTAATGT +TAGAAGAAATAGATTATAGATTAGGAGTAGGAGCATTGATAGTAGCACTGATCATAGCAA +TAGTTGTGTGGATCATAGCTTATATAGAATATAGGAAATTGGTAAGACAAAGAAGAATAA +ACTGGTTAATTGAAAGAATTAGGGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAGGGTG +ATACAGAGGAATTGGAAACAATGGTGGATATGGGGAATCTTAGGCTTTTGGATGTTAATG +ATGTGTAATGTGATGGGGAACTTGTGGGTCACAGTATATTATGGGGTACCTGTGTGGAGA +GAAGCAAAAGCCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAAGTGCAC +AATGTCTGGGCTACACATGCCTGTGTACCCACAGACCCCAATCCACAAGAAATGTTTTTG +GAAAATGTAACAGAAAATTTTAACATGTGGGACAATGACATGGTGGATCAGATGCATCAG +GATATAATCAGTTTATGGGATCAAAGCCTAAAACCATGTGTAAAGTTGACCCCACTCTGT +GTTACTTTAAACTGCACGAATGCGGAGGGTAACAGCACTACTACTAACAGAACTAGTAAC +AGCACTACTACTAACAGCACTAGTAGTAAAAATGATACCATGAGGGGAGAAATAAAAAAG +TGTTCTTTCAATATGACCACAGAACTAAAAGATAAGAGCAAAAAGGTACATGCACTTTTT +TATAGACTTGATATAGTACCAATTAATACTACGGAGAGTAATAGAACTTATGAGAATTAT +AGATTAATAAATTGTAATACCTCAACCATAGCACAAGCCTGTCCAAAGATCACTTTTGAC +CCAATTCCTATACATTATTGTGCTCCAGCGGGTTATGCGATTCTAAAGTGTAATGAGAAG +ACATTCAATGGAACAGGACCATGCAAAAATGTCAGTACAGTACAATGTACACATGGAATT +AAGCCAGTGGTATCAACTCAACTACTGTTAAATGGTAGTCTAGCAGAAGAAGAGGTAATA +ATTAGATCTAAAAATCTAACAGACAATGCTAAAACAATAATAGTACAACTTAAGGAACCT +GTAGAAATTACTTGTACAAGACCCAACAATAATACAAGAGAAAGTATAAGAATAGGACCA +GGACAAACATTCTATGCAACAGGAGACATAATAGGAGATATAAGACAAGCATATTGTACC +CTTAATGAAACAACATGGAATAGAACTTTACAAGCAGTAGGAGAAAAATTAGCAGAGCAC +CTCAATAAAACAACAATAAAATTTGCAAACCACTCAGGAGGAGACTTAGAAGTTGTAACA +CATAGCTTTAATTGTGGAGGAGAATTTTTCTATTGTAATACAACAGGCCTGTTTAATGGT +ACATACATAAAAAATTCTAATGCAACAGGAAACATTACTAGAAACATCACAATCCCATGC +AGAATAAAACAAATTATAAACATGTGGCAGAAGGTAGGACGAGCAATGTATGCCCCTCCC +ATTCGAGGAATAATAACCTGTAGGTCAAATATCACAGGACTACTACTGACACGTGATGGA +GGAGAGAATGATACAGAGACAGTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGA +AGTGAATTATATAAATATAAAGTGGTAGAAATTAAACCATTAGGAATAGCACCCACTAAG +GCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTGTGTTCCTT +GGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCATCAATAACGCTGACGGTACAG +GCCAGACAATTGTTGTCTGGGATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAG +GCGCAACAGCATATGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGACAAGAGTC +CTGGCTATAGAAAGATACCTAAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGA +AAACTCATCTGCACCACTGCTGTGCCTTGGAACTCTAGTTGGAGTAATAAATCTCAAAGT +ACTATTTGGAATAACATGACCTGGATGCAGTGGGATAGAGAAATTAATAATTACACAGGC +ATAATATACAGTTTGCTTGAAGAATCGCAAAACCAGCAGGAGAAAAATGAACAGGATTTA +TTAGCATTGGACAAGTGGCAAAGTCTGTGGAATTGGTTTGGTATAACAAAATGGCTGTGG +TACATAAAAATATTCATAATGATAGTAGGAGGCTTAATAGGGTTAAGAATAATTTTTGCT +GTGCTCTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCCTTGTCGTTTCAGACCCTT +ATCCCAAACCCGAGGGGACCAGACAGGCCCGGAGGAATCGAAGAAGAAGGTGGAGAGCAA +GACAGAGACAGATCCGTTCGATTAGTGAGCGGATTCTTGGCGCTTGCCTGGGACGACCTG +CGGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGGGACTTACTATTAATTGCAGCGAGG +ACGGTGGAACTTATGGGACGCAGCAGCCTCAGGGGATTACAGAGGGGGTGGGAAATCCTT +AAGTATTTAGGAAGCCTTGTGCAGTATTGGGGTCTAGAGCTAAAAAAGAGTGCTATTAGT +GTGCTTGATGCCACAGCAATAGCAGTAGCTGAAGGAACAGATAGGATTATAGAAGCAATA +CAAAGAGTTTGGAGAGGCATCTGCAACATACCTAGAAGAATAAGTCAGGGCTTTGAAGCA +GCTTTGCAATAAAATGGGAAACAAATGGTCAAAATGTAGTCCAGTGGGATGGCCTGCTAT +AAGAGAGAGAATAAGACGAGCTGAGCCAGCAGCAGAGGGAGTAGGACCAGCGTCTCAAGA +CTTAGATAGATATGGGGCACTGACAAGCAGCAACACCCCTGCCAATAATGCTGATTGTGC +CTGGTTGGAAGCGCAACAGGAGGAAGAAGAGGTAGGCTTTGTAAGACCAATGACTTATAA +GGCAGCATTCGATCTCAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATTTA +CTCCAAGAAAAGGCAAGACATCCTTGATTTGTGGGTCTATAACACACAAGGCTACTTCCC +TGATTGGCAAAACTACACACCAGGACCAGGAGTCAGATTTCCCCTGACCTTTGGATGGTG +CTTCAAGCTAGTGCCAGTTGACCCAAGGGAAGTGGAAGAGGCCAATGCAGGAGAGACCAA +CTGCTTGCTACACCCTATGAGCCTACAGGGAATGGAAGATGACCACGGTGAAGTATTACA +GTGGAAGTTTGACAGTATGCTAGCACGCAGACACGTGGCCCGCGAGCTACATCCGGAGTA +TTACAAAAACTGATGACACAGAAGGGACTTTCCGCTGGGACTTTCCACTGGGGCGTTCCA +GGAGGAGTGGTCTGGCGG +>D.CM.2001.0.01CM_0009BBY.AY371155 AY371155 +GCGAGAGCGTCAGTATTAAGCGGAGGAAAATTGGATGCATGGGAGAAAATTCGGTTACGG +CCAGGGGGACGCAAAAGGTATAGGCTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAA +CGATTTGCACTTAATCCTGGCCTTTTGGAAACATCAGAGGGCTGTAAACAAATAATAAGC +CAGTTGCAGCCATCTCTTAAGACAGGATCAGAAGAGCTTAGATCATTATTTAATACAGTA +GCAACACTCTATTGTGTACATAACAGAATAGAGGTAAAAGACACCAAAGAAGCTTTAGAT +AAGATAGAGGAAGAACAGAAAAAAGCACAGCAAGCAGCAGCTAACAAAGGAAACAACAGC +CAGGTCAGCCAAAATTACCCTATAGTGCAGAACTTACAGGGACAAATGGTACATCAAGCC +ATATCACCTAGAACCTTGAACGCATGGGTAAAAGTAATAGAGGAAAAGGCTTTCAACCCA +GAAGTAATACCCATGTTTTCAGCGTTAGCAGAAGGAGCCACCCCACAAGATTTAAACACC +ATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAAACCATCAAT +GAGGAAGCTGCAGAATGGGACAGGCTACATCCAGTGCATGCAGGGCCCGTTGCACCAGGC +CAGATGAGAGAACCAAGGGGAAGTGATATTGCAGGAACTACTAGTACCCTTCAGGAACAA +ATGGCATGGATAACAGGCAATCCACCTGTCCCGGTAGGGGAAATCTATAAGAGATGGATA +ATCTTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGTATTTTGGATATAAGA +CAAGGACCAAAAGAGCCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCC +GAACAAGCTTCACAAGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTTCAAAATGCA +AACCCAGACTGTAAAACTATCTTAAAGGCATTGGGACCAGGAGCTACATTAGAAGAAATG +ATGACAGCATGTCAGGGAGTGGGAGGGCCCAGCCATAAAGCAAGAGTCTTGGCTGAGGCA +ATGAGCCAAGCAACAGGTGCCTCTGCTGCAATAATGATGCAGAAAGGCAATTTTAAGGGC +CCAAGGAGAACTGTTAAGTGTTTCAACTGTGGCAAAGAAGGGCACATAGCAAAAAATTGC +AGGGCTCCTAGGAAAAAGGGTTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGAT +TGCACTGAAAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCCACAAGGGAAGGCCG +GGGAACTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAATAGAGAGCTTCGGGTTT +GGGGAAGAGGTAACCCCCTCTCAGAAACAGGAGCAGAAGGACAAAGACAAGGAACTGTAT +CCCTTAGCTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAATAAAAGTAGGGG +GACAGTTAAAAGAAGCTCTACTAGATACAGGAGCAGATGATACAGTATTAGAAGACATAA +ATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAA +GACAGTATGATCAGGTACCTATAGAAATCTGTGGACAGAAGGCTATAGGTACAGTATTAG +TAGGACCTACACCTGTCAACATAATTGGAAGAAATTTGTTGACCCAGATTGGCTGCACTC +TAAATTTTCCAATTAGTCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATG +GCCCAAAAATTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTT +GTACAGAAATGGAAAAGGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATA +CTCCAGTATTTGCTATAAAGAAAAAAGACAGTACTAAGTGGAGAAAGTTAGTAGATTTCA +GAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCGCATCCCG +CAGGGCTGAAAAAGAAAAAATCAGTAACAGTACTGGATGTAGGTGATGCATACTTTTCAG +TTCCCTTAGATAAAGATTTTAGGAAGTACACTGCATTCACCATACCTAGTACAAACAATG +AGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAGGGCTCACCAG +CAATATTCCAATGTAGTATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGAAC +TAATTATCTATTCATACATGGATGATTTGTATGTAGGATCTGATTTAGAGATAGGGCAGC +ATAGATCAAAAATAGAAGAATTAAGAGAACATTTATTGAAGTGGGGACTTACCACACCAG +ATAAGAAACATCAGAAAGACCCTCCATTTCTTTGGATGGGTTATGAACTCCATCCTGATA +AATGGACAGTACAGCCTATAAAACTGCCAGAAAAAGAAAGCTGGACTGTCAATGATATAC +AGAAGTTAGTGGGAAAATTAAATTGGGCAAGCCAGATTTATTCAGGAATTAAAGTAAAGC +AATTATGTAAACTCCTTAGGGGAGCTAAAGCATTAACAGAGGTAATACCACTAACAAAAG +AAGCAGAATTAGAACTAGCAGAAAACAGGGAGATTCTCAGAGAACCAGTACATGGAGTGT +ATTATGACCCATCAAAAGACTTAATAGCAGAAGTACAGAAACAAGGGGAAAGCCAATGGT +CTTGGCAAATTTATCAAGAACCATTTAAAAATCTGAAAACAGGAAAGTATGCAAAAATGA +AGAGTGCCCATACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAGCCACAG +AAAGCATAATAATATGGGGAAAGATTCCTAAATTTAGACTACCCATACAAAAAGAAACAT +GGGAAGCATGGTGGATGGAGTATTGGCAGGCCACTTGGATTCCTGAGTGGGAGTTTGTCA +ATACCCCTCCTTTAGTGAAATTGTGGTATCAGTTAGAGAAGGAACCCATAATAGGAGCAG +AAACTTTCTATGTAGATGGGGCAGCTAATAGAGAGACTAAATTAGGAAAAGCAGGATATG +TTACTGACAAAGGAAGACAGAAAGTTGTCCCGTTTACTGACACTACTAATCAGAAGACTG +AGTTACAAGCAATTAATCTAGCTTTGCAGGATTCGGGGTCAGAAGTGAACATAGTAACAG +ATTCACAATATGCATTAGGAATCATTCAAGCACAACCAGACAAGAGTGAATCAGAATTAG +TCAGTCAAATAATAGAAGAGTTAATAAAAAAGGAAAAGGTCTACCTAGCATGGGTACCAG +CACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAGCGGAATTAGAA +AAGTACTATTTTTGGATGGAATAGATAAAGCTCAAGAGGAACATGAAAAATATCACAGCA +ATTGGAGAGCAATGGCTAGTGATTTTAACCTACCACCTGTGGTAGCAAAAGAAATAGTAG +CTAGCTGTGATAAATGTCAACTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTC +CAGGAATATGGCAATTAGATTGTACACATCTAGAAGGAAAAGTTATCCTGGTAGCAGTTC +ATGTAGCCAGTGGCTATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAAGAAACAG +CATACTATCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAGTACATACAGACAATG +GCAGTAATTTTACCAGTGCTGCTGTTAAGGCCGCCTGTTGGTGGGCAGGTATCAAGCAGG +AATTCGGAATTCCCTACAATCCCCAAAGCCAAGGAGTAGTAGAATCTATGAATAAAGAAT +TAAAGAAAATTATAGGACAGGTAAGAGATCAAGCTGAACATCTTAAAACAGCAGTACAAA +TGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGG +AAAGAATAATAGACATAATAGCAACAGACATACAAACTAGAGAACTACAAAAACACATCA +CAAACATTCAAAATTTTCGGGTTTATTACAGGGACAACAGAGATCCAATTTGGAAAGGAC +CAGCAAAGCTTCTTTGGAAAGGTGAAGGGGCAGTAGTGATACAAGACAATAGTGACATAA +AGGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTG +ATGATTGTGTGGCAAGTAGACAGGATGAGGATTAACACATGGAAAAGTTTAGTAAAATAC +CATATGCATGTTTCAAAGAAAGCTAAAGGATGGTTTTATAGACAGCACTATGAGAGCCCT +CACCCAAAAATAAGTTCAGAAGTACACATCCCATTAGGGGATGCTAAACTGGTGGTAACA +ACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATCTGGGTCAGGGAGTCTCCATA +GAATGGAGAAAAAAGAGATATAGCACACAAGTAGACCCTGGTTTGGCAGACCAACTAATT +CATATGTATTACTTTGATTGTTTTGCAGACTCTGCTATAAGAAAAGCCATATTAGGACAT +AGAGTTAGTCCTAGGTGTGATTATCAAGCAGGACATAACAAGGTAGGATCCTTACAATAT +TTGGCACTAACAGCACTAATAGAGCCAAAAAAGATAAAACCACCTTTGCCTAGTGTTAGG +AAGTTAACAGAAGACAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAACCAT +ACAATGAATGGACATTAGAGATTTTAGAGGAGCTCAAGAGTGAAGCCGTTAGACATTTCC +CTAGGGTATGGCTTCATGGCTTAGGACAACATATTTATGAAACTTATGGGGATACCTGGG +CAGGAGTTGAAGCTATAACAAGAGTCCTGCAACAACTACTGTTCATTCATTTCAGAATTG +GGTGCCAACATAGCAGAATAGGCATTACTCGACAGAGAAGAGCAAGAAATGGATCCAGTA +GATCCTAACCTAGAGCCCTGGAAACATCCAGGAAGTCAGCCAAGTACTGCTTGTAACTCA +TGTTATTGTAAACAGTGTTGCTATCATTGCCAACTTTGCTTCATAAAGAAAGGCTTAGGC +ATCTCCTATGGCAGGAAGAAGAGAGGACAGCGACGAGGACCTCCTCAAGGTAGTCAGACT +CATCAAGTTCCTGTACCAAAACAGTAAGTAGTACATGTAATGCAATCTTTAGAGATATTA +GCAATAGTAGCATTAGTAGTAGCGCTAATATTAGCAATAGTTGTGTGGACCATAGCATAC +ATAGAATATAGGAAAGTAAAGAGGCAAAGAAAAATAAATCAGTTAATTGATAGAATAATA +GAAAGAGAAGAAGACAGTGGCAATGAGAGTGAGGGGGATAGAGAGGAATTATCAACACTT +ATGGAAATGGGGCACCATGCTCCTTGGGATGTTGCTGATAACATATAGTGCAGCAAGTAA +TTTGTGGGTCACAGTATATTATGGGGTGCCTGTATGGAAAGAAGCAAACGCCACTCTATT +TTGTGCATCAGATGCTAAAGCATATAAAGCAGAGGCACATAATATCTGGGCTACACATGC +CTGTGTACCCACGGACCCCAATCCACAAGAAATAGAACTGAAAAATGTCACAGAAAATTT +TAATATGTGGAAAAATAACATGGTGGAACAAATGCATGAGGATATAATCAGTTTATGGGA +ACAAAGCCTAAAACCATGTGTAAAATTAACCCCACTATGTGTCACTTTAAACTGCACTGA +TGCTAAAGTGAGCAGCACTGAGACTGAATTGAACAACAGCAGCACTGGAGAGATGAAAAA +TTGCTCTTTTAATATAACCACAGAATTAAGGGATAAGAAAAAGCAAGAATATGCACTTTT +TTATAAACTTGATATAGTAGAAATAGATAAGAAGGATAATAGTACTGATAATAGTACTGA +TGGAACTTATAGGTTAATAAATTGTAATACCTCAGCCATTACACAAGCTTGTCCAAAGGT +ATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGATTTGCAATTCTCAAATG +CAATGACAAGAGGTTCAATGGAACAGGCCCATGCACAAATGTCAGCACAGTACAATGTAC +ACATGGAATCAAGCCAGTAGTGTCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGA +AGACATTATGATTAGATCTGAAAATTTCACAGACAATGTTAAAAACATAATAGTGCAGTT +TAACACAACTATAAACATTACCTGTATAAGGCCTGGTAACAATACAAGAAAAAGTATACA +TTTCGGACCAGGGCAGGCACTCTATGCAAATGATATAATAGGAGACATAAGAAAAGCTCA +TTGTAATATTAGTGGAAAAGATTGGAATAACACTCTACAAGAGGTAGCTAGAAAATTAGG +AAATCTCTATAACAAAACAATAAGTTTTAGACCATCCTCAGGAGGGGACCCAGAAATTAC +AACACACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATACATCAAAACTGTTTAA +TAGAACATGGAGTATTGGTACATGGGAGGATAGTACAGGGAATGATAATAATACTGCATT +AAATGATACAATAACCCTCCCATGTAGAATAAAACAAATTATAAACATGTGGCAGGAAGT +AGGAAAAGCAATGTATGCCCCTCCCATCGCAGGACAAATTAAATGTACATCAAATATTAC +AGGGCTATTATTGACAAGAGATGGTGGTAATAATAATTCTGGTAATAATTCTGGAAATTC +TACAGAGATCTTCAGGCCTGGAGGAGGAAATATGAAGGACAATTGGAGAAGTGAATTATA +TAAATATAAAATAGTAAGAATTGAACCACTAGGAGTAGCACCCACCAGGGCAAAGAGAAG +AGTGGTGGAAAGAGAAAAAAGAGCAATAGGATTAGGAGCTATGTTCCTTGGGTTCTTGGG +AGCAGCAGGAAGCACGATGGGCGCAGCGTCAATGACGCTGACGGTACAGGCCAGACTATT +ATTGTCTGGTATAGTGCAACAGCAAAATAATTTGCTGAGAGCTATAGAGGCGCAACAACA +TCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAATCCTGGCTGTGGA +AAGATACCTGAAGGATCAACAGCTCCTAGGAATTTGGGGTTGCTCTGGAAAACACATCTG +CACCACTAATGTGCCCTGGAATTCTAGTTGGAGTAATAAATCTCTAGATGATATTTGGGA +GAACATGACCTGGATGCAATGGGAAAAAGAAATTGAGAATTACACAGGTGTGATATACAA +TTTAATTGAAGAGTCGCAAATCCAGCAAGAAAAAAATGAAAAAGAATTATTAGAATTGGA +TAAGTGGGCAAGTTTGTGGAATTGGTTTAGCATAACTAACTGGCTGTGGTATATAAGAAT +ATTCATCATGATAGTAGGAGGCTTAATAGGCTTAAGAATAGTTTTTGCTGTGCTGTCTAT +GGTAAATAGAGTTAGGCAGGGGTACTCACCTCTATCATTTCAGACCCTCCTCCCAGCCCC +GAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGCAAGACAGAGGCAC +CTCCATACGATTGGTGAACGGATTCTCAGCACTTATCTGGGACGATCTGCGGAACCTGTG +CCTCTTCAGCTACCACCGCTTGAGAGACTTAATCTTAATTGTAGCGAGGACTGTGGAACT +TCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATCTGTGGAATCTCCTACAGTATTGGGG +TCAGGAACTGAAGAATAGTGCTATTAGCTTGTATAACGCCACAGCAGTAGCAGTAGCTGA +GGGGACAGATAGGGTAATAGAACTAGGGCAAAGAGCTTTTAGAGCTGCTCTTCATATACC +CACAAGAATAAGACAAGGTTTAGAAAGGGCTTTGCTATAAAATGGGTGGCAAATGGTCAA +AAAGTAGTATAGTTGGATGGCCTGCTATAAGGGAAAAAATAAGAAGAACTAATCCTATTC +CAGCAGCAGATGGGGTAGGAGCAGTATCTAAAGATCTGGAAAAACATGGGGCAATCACAA +GTAGCAATACAGCAGATACTAATGCTGCCTGTGCCTGGCTAGAAGCACAAGAAGAGGAAG +AGGTGGGCTTTCCAGTCAGACCTCAAGTACCTTTAAGACCAATGACTTACAAGGGAGCTT +TAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAGTTTACTCCCAAA +GAAGACAAGAGATCCTTGATCTTTGGGTCTACCACACACAAGGCTACTTCCCTGATTGGC +AGAACTACACACCAGGGCCAG +>G.BE.1996.0.DRCBL.AF084936 AF084936 +ACTTGACCTATGGGCTATAATACCAAAGGATTCTTCCCAGATTGGCAGAACTACACACCA +GGGCCAGGGACTAGATTCCCACTGACCCTTGGGTGGTGCTTCAAACTGGTACCAATGGAT +CCATCAGAGGTAGAGGAAGCCAATAAAGGAGAGAACAACAGTCTATTACACCCCATCTGC +CAGCATGGAATGGAGGACGAAGACAGAGAAGTGCTGGTGTGGAAATTTGACAGTAGCCTA +GCACGGAGACACATAGCCCGAGAGCTGCATCCGGAGTACTACAAAGACTGCTGACACAGA +AGTTGCTGACAAGGGGACTTTCCGCCTGGGACTTTCCAGGGGAGGCGCGGCCTGGGAGGG +GCTGGGGAGTGGCTAACCCTCAGAAGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGG +GTCTCTCTTGTTAGACCAGATTTGAGCCTGGGAGCTCTCTGGCTAGCAGGGGAACCCACT +GCTTAGAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGT +GTGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGATAGTGTAAAAATCTCTAGCAG +TGGCGCCCGAACAGGGACTTGAAAACGAAAGTTAATAGGGACTCGAAAGCGAAAGTTCCA +GAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGC +GGCGACTGGTGAGTACGCCAAAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGT +GCGAGAGCGTCAGTATTAAGCGGGGGAAAATTAGATGCTTGGGAGAAAATTCGGTTGAGG +CCAGGGGGAAAGAAAAGATATAGAATGAAACATTTAGTATGGGCAAGCAGGGAGCTGGAC +AGATTTGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGTTGTCAAAAAATAATGGCA +CAGTTGCAACCAGCTCTCCAAACAGGAACAGAGGAGATTAAATCACTATTTAATACAGTA +GCAACCCTCTATTGTGTACATCAAAAGATAGAGGTAAGAGACACCAAAGAGGCTCTAGAG +GAAGTGGAAAAGATACAAAAGAAGAGTCAGCAAAAAGAAAACAGCAGCAGCCAAGTCAGT +CAAAATTACCCTATAGTGCAGAATGCACAAGGGCAAATGGTACACCAGGCCATATCACCT +AGAACTTTGAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCCTTCAGTCCAGAAGTAATA +CCCATGTTTACAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAATACCATGCTAAAT +ACAGTGGGGGGGCATCAAGCAGCTATGCAAATGTTAAAGGAGACTATCAATGATGAAGCT +GCAGAATGGGACAGGCTACATCCACAGCAGGCAGGGCCTATTGCACCAGGCCAGATAAGG +GACCCAACGGGAAGTGATATAGCAGGAGCTACTAGTACCCTGCAGGAACAGATAAGATGG +ATGACCAGCAACCCACCTGTCCCAGTGGGAGAAATTTATAAAAGATGGATAATCCTGGGG +TTAAATAAAATAGTAAGAATGTACAGCCCTGTCAGCATTTTGGACATAAGACAGGGGCCA +AAAGAACCCTTTAGAGATTATGTGGATAGATTCTTTAAAACCCTGAGAGCTGAGCAAGCT +ACACAGGAAGTAAAAAGCTGGATGACAGACACCTTGTTGATCCAAAATGCAAACCCAGAT +TGTAAGATCATCTTAAAAGGATTAGGACAAGGAGCTACACTAGAAGAAATGATGACAGCA +TGTCAGGGAGTGGGAGGACCCAGCCATAAAGCAAGAGTTTTAGCTGAGGCAATGAGCCAG +GCATCAGGTGCAGCAGCAGCCATAATGATGCAGAAAAGCAATTTCAAGGGCCCAAGAAGA +ACAATTAAATGTTTCAACTGTGGCAAGGAAGGACATCTAGCCAGAAATTGCAGGGCCCCT +AGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAGGGACATCAAATGAAAGAATGCACAGAA +AGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGGAGGCCAGGGAATTTC +CTTCAGAACAGGCCAGAGCCAACAGCCCCACCCGCAGAGAACTTCGGGTTCGGGGAGGAG +ATAGCCCCCTCCCCGAAGCAGGAGCAGAAGGAAAAGGAACTATATCCTCTATCTTCCCTC +AAATCACTCTTTGGCAACGACCAATAGTCAAAGTAAGAATAGGGGGACAGCTAATAGAAG +CCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAGATTTACCAGGAAAAT +GGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAAA +TACTTATAGAAATTAGTGGAAAAAGGGCTATAGGGACAGTATTAGTAGGACCTACACCTA +TCAATATAATTGGGAGAAATATGTTGACTCAGATTGGTTGCACTTTAAATTTTCCAATTA +GTCCTATTGAAACTGTGCCAGTAAAATTAAAGCCAGGAATGGATGGGCCACGGGTTAAAC +AATGGCCATTGACAGAAGAGAAAATAAAAGCATTAACAGAAATTTGTAATGAGATGGAAA +AGGAAGGAAAAATTTCAAAGATTGGGCCTGAAAACCCATATAACACTCCAATATTTGCCA +TAAAGAAAAAAGACAGTACTAGATGGAGAAAATTGGTAGATTTCAGAGAGCTCAATAAAA +GGACTCAAGACTTCTGGGAGGTCCCATTAGGAATACCTCATCCCGGGGGGTTAAAACAGA +AAAGATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCTTTAGATGAAA +ACTTTAGAAAATATACTGCATTCACTATACCTAGTACAAATAATGAGACACCAGGAATTA +GATATCAGTACATCCACAGGGATGGAAAGGATCACCAGCAATATTTCAGAGTAGCATGAC +AAAAATCTTAGAGCCCTTTAGAACACAAAATCCAGAAATAGTGATCTACCAATACATGGA +TGATTTATATGTAGGATCAGACTTAGAAATAGGGCAGCATAGAGCAAAAATAGAAGAGTT +AAGAGAACATCTACTGAGATGGGGATTTACCACACCAGATAAGAAACATCAGAAAGAACC +TCCATTTCTTTGGATGGGATATGAGCTCCATCCTGACAAATGGACAGTACAACCTATACA +GCTGCCAAACAAGGAAAACTGGACTGTTAATGATATACAAAAGTTAGTGGGAAAACTAAA +TTGGGCAAGTCAGATTTATCCAGGAATTAAAGTAAAGCAATTATGCAAACTCATTAGGGG +GGCCAAAGCATTAACAGACATAGTATCAATGACAGCAGAAGCAGAAATGGAGTTGGCAGA +GAACAGGGAGATTCTAAAAGAACCTGTACATGGAGTCTATTATGACCCATCAAAAGACCT +AATAGCAGAAGTACAGAAACAAGGGCTAGGCCAATGGACATATCAAGTTTATCAAGAGCC +ATATAAAAATCTGAAAACAGGAAAATATGCAAAAGGGGGGTCTGCCCACACTAATGATGT +AAAGCAATTAACAGAAGTAGTGCAAAAAATAGCCACAGAGGGCATAATAATATGGGGAAA +GATTCCTAAATTTAAATTACCTATAAAAAAAGAAACATGGGAAGTGTGGTGGACAGAGTA +TTGGCAGGCCACTTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCTTTAGTCAAATT +ATGGTATCAGTTAGAAACAGAACCCATACCAGGAGTAGAAACTTACTATGTAGATGGGGC +AGCTAATAGGGAGACAAAATTAGGAAAGGCAGGATATGTGACTGACAAAGGAAGACAAAT +TATTATTACCCTAACTGAAACAACAAACCAAAAGGCTGAATTACATGCAATTCAGCTAGC +TCTGCAGGACTCACAATCAGAAGTAAACATAGTAACAGACTCACAGTATGCATTAGGAAT +CATTCAAGCACAGCCAGATAGGAGTGAATCAGAAATAGTCAATCAAATAATAGAACAGCT +AATAAAAAAGGAAAAGGTCTACCTGTCATGGGTACCAGCACACAAAGGGATTGGAGGAAA +TGAACAAGTGGATAAATTAGTCAGTAGTGGAATCAGGAAAGTACTATTTTTAGATGGCAT +AGATAAAGCCCAAGAAGAGCATGAAAGATATCACAGCAATTGGAAAGCAATGGCTAGTGA +TTTTAATCTGCCACCTATAGTAGCAAAAGAAATAGTGGCCAGCTGTGATAAATGCCAGTT +AAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAATTGGATTG +TACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTGGCTATATAGA +AGCAGAAGTTATCCCAGCAGAAACAGGACAGGAAACAGCATACTTTATATTAAAATTAGC +AGGAAGGTGGCCAGTAAAAATAATACATACAGACAATGGCAGCAATTTTACCAGTGCTGC +AGTAAAGGCAGCATGTTGGTGGGCAAGCATCACACAGGAATTTGGAATTCCCTACAATCC +CCAAAGCCAAGGAGTAGTGGAATCTATGAATAAGGAATTAAAGAAAATCATAGGACAGGT +CAGGGATCAAGCTGAACATCTTAAGACAGCAGTACAGATGGCAGTATTCATTCACAATTT +TAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGC +ATCAGATATACAAACTAAAGAACTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGT +TTATTACAGGGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGG +TGAAGGGGCAGTAGTAATACAAGACAATAACGAAATAAAAGTAGTACCAAGAAGAAAAGC +AAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACA +GGATGAGGATTAGAACATGGAACAGTCTAGTGAAACATCATATGTATATTTCAAAGAAAG +CTAAAGGCTGGTTTTATAGACATCACTATGAAAGTAGGCACCCAAAAGTAAGTTCAGAAG +TACACATCCCACTAGGAGATGCTAAACTAGTAGTAAGAACATATTGGGGTCTGCATACAG +GAGACAAAGAATGGCACTTGGGGCATGGGGTCTCCATAGAATGGAGGCAGGGAAGATATA +GTACACAAGTAGATCCTGACCTAGCAGACCACCTAATTCATCTGCATTATTTTAATTGTT +TTTCAGAATCTGCCATAAGGAAAGCCATATTAGGACAAACAGTTAGGCCTAGTTGTGAAT +ATCCAGCAGGGCATAATAAGGTAGGATCTTTACAATATTTGGCATTAAAAGTATTAGTGG +CACCAACAAGGAGAAGGCCACCTTTGCCTAGTGTTAGGAAATTAACAGAGGATAGATGGA +ACGAGCCCCAGAAGACCAGGGGCCACAGAGAGAACCCCACAATGAATGGGCATTAGAACT +GTTAGAAGAGCTTAAACATGAAGCTGTTAGACATTTTCCTAGGCCCTGGCTCCATGGTTT +AGGACAGCTTATCTATAACACTTATGGGGATACTTGGGAGGGAGTTGAAGCCATAATAAG +AATACTACAACAACTACTGTTTATCCATTTCAGAATTGGGTGCCAACATAGCAGAATAGG +CATTATTCCACAGAGGAGAAGAGTAAGGGATGGATCCGGTAGATCCTAAACTAGAGCCCT +GGAAGCATCCGGGGAGTCAGCCTAAAACTCCCTGTAACAATTGCTATTGTAAAAGTGTTG +CTGCATTGCAAGTTTGCTTTCTGAACAAAGGCTTAGGCATCTCCTATGGCAGGAAGAAGC +GGAAGCACCGACGAGGAACTCCTCACAGCAGTAAGGATCATCAAACTCCTGTACCAAAGC +AGTAAGTAGAAATAAATAGTAGATGTAATGCAACCACTAGAAATATCTGCAATAGTAGGC +TTAATAGTAGCATCCATAGCAGCCATAGTTGTGTGGACTATAGTATTTATAGAATATAGA +AAAATAAGAAAACAGAAAAGAATAGAAAAGTTACTTGATAGGATAAGAGAAAGAGCAGAA +GACAGTGGAAATGAGAGTGAAGGGGATACAGAGGAATTGGCAACACTTATGGAACTGGGG +GATTTTGATCCTTGGGTTGGTGATAATTTGTAGTGCAGAAAAATTGTGGGTCACAGTCTA +TTATGGAGTACCTGTGTGGGAAGATGCAAATGCCCCTCTATTTTGTGCATCTGATGCTAA +AGCACATAGTACTGAAAGTCATAATATCTGGGCCACACATGCTTGTGTACCCACAGATCC +CAGCCCACAAGAAATAAATATGAGAAATGTAACAGAAAATTTTAACATGTGGAAAAATAA +CATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATGAAAGCCTAAAGCCATG +TGTAAAGCTAACCCCTCTCTGTGTTACTTTAAACTGTACTGAGATAAACAATAATAGTAC +TCGGAATATCACTGAGGAGTACAGAATGACAAACTGCTCTTTCAATATGACCACAGAACT +GAGAGATAAGAAGAAGGCAGAATACGCGCTTTTCTATAGAACTGATGTAGTACCAATTAA +TGAGATGAATAATGAAAATAATGGTACAAATAGTACATGGTATAGGCTGACAAATTGTAA +TGTCTCAACCATTAAACAGGCTTGTCCAAAGGTAACTTTTGAGCCAATTCCCATACATTA +TTGTGCTCCAGCTGGTTTTGCGATCCTAAAGTGTGTGGATAAGAAGTTCAATGGAACAGG +AACATGTAACAATGTCAGTACAGTACAATGTACACATGGAATTAAGCCAGTAGTATCAAC +TCAACTACTGCTGAATGGCAGTTTAGCAGAAAAAGATATCATAATTAGTTCTGAAAATAT +CTCAGACAATGCCAAAGTCATAATAGTGCACCTTAATAGGTCTGTAGAAATTAATTGTAC +CAGACCCAACAACAATACAAGAAGAAGTGTAGCAATTGGACCAGGACAAGCATTCTATAC +AACAGGAGAAGTAATAGGAGACATAAGAAAGGCACATTGTAATGTTAGTTGGACAAAATG +GAATGAGACGCTAAGGGATGTCCAGGCAAAACTACAGGAATACTTTATTAATAAGAGCAT +AGAATTTAACTCATCTTCAGGAGGGGACCTAGAAATTACAACACATAGTTTCAATTGTGG +AGGGGAATTTTTCTATTGTAATACATCAGGACTATTTAATAATAGTATATTAAAGAGTAA +TATATCAGAAAATAATGATACTATCACACTTAATTGTAAGATAAAACAAATTGTGAGAAT +GTGGCAGAGAGTGGGACAAGCAATGTATGCCCCTCCCATTGCAGGAAACATTACATGTAG +ATCAAACATTACAGGACTAATATTAACAAGAGATGGTGGGGATAACAATAGCACTAGTGA +GATCTTCAGACCTGGAGGAGGAGATATGAAAAACAATTGGAGAAGTGAATTATATAAGTA +TAAAACAGTAAAAATCAAATCACTAGGAATAGCACCCACCAGGGCAAGGAGAAGAGTGGT +GGAGAGAGAAAAAAGAGCAGTTGGAGTAGGAGCTATCTTCCTTGGGTTCTTAGGAACAGC +AGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGTCAGACAATTATTGTC +TGGCATAGTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCGCAGCAGCATCTGTT +GCAACTCACAGTCTGGGGCATTAAACAGCTCCGGGCAAGAGTCCTGGCTCTGGAAAGATA +CCTAAAGGATCAACAGCTCCTAGGGATTTGGGGCTGCTCTGGAAAACTCATCTGCACCAC +TAATGTGCCCTGGAACACTAGTTGGAGTAATAAATCTTATAATGAGATTTGGGAGAACAT +GACTTGGATAGAATGGGAAAGGGAAATTGACAATTACACATACCACATATACAGCCTGAT +TGAACAATCGCAAATCCAGCAGGAAAAGAATGAACAAGACTTATTGGCATTGGACCAGTG +GGCAAGTCTGTGGAGTTGGTTTAGCATCTCAAACTGGCTATGGTATATAAGAATATTTGT +AATGATAGTAGGAGGCTTAATAGGTTTAAGAATAGTTTTTGCTGTGCTATCTATAGTAAA +TAGAGTTAGGCAGGGCTACTCACCTTTATCCTTTCAGACCCTTCTCCACCACCAGAGGGA +ACCCGACAGGCCCGCAGGAATCGAAGAAGGAGGTGGAGAGCAAGACAGAGACAGATCCAT +TCGATTAGTGAGCGGATTCTTAGCACTTGCCTGGGACGACCTGAGGAGCCTGTGCCTCTT +CAGCTACCACCGCTTGAGAGACTTCATCTTGATTGCAGCGAGGACGGTGGAACTTCTGGG +ACGCAACAGTCTCAAGGGACTGAGATTGGGGTGGGAAGCCCTCAAATATTTGTGGAATCT +TCTGTTGTATTGGGCTCGGGAACTAAAGAATAGTGCTATTAATTTGCTTGATACAATAGC +AATAGCAGTAGCTAACTGGACAGATAGGGTTATAGAAGTAGCACAAAGAGCTGGTAGAGC +TGTTCTCAACATACCTAGAAGAATAAGACAGGGCTTAGAAAGAGCTTTGCTATAAAATGG +GAAACAAGTGGTCAAAAAGGAAAGTAGCTGGATGGCCCGAGGTAAGGGAAAGACTAAGAC +AACACCCTGCAGCAGCAGAAGGAGTAGGAGCAGTATCTCAAGATTTAGATAGGCATGGAG +CCATCACAAGTAGAAATACAGCAGGCACCAATCCTGATTGTGCCTGGCTGGAAGCACAAG +AGGAGGACTCAGAGGTAGGCTTTCCAGTCAGACCACAGGTACCTTTAAGACCTATGACTT +ATAAGGCTGCGTTTGATCTCAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAG +TTTACTCCAAGAAAAGACAAGAGATCCTTGACCTATGGGTCTATCATACACAAGGATTCT +TCCCAGATTGGCAGAACTACACACCAGGGCCAGGGACTAGAGTCCCACTGACCTTTGGGT +GGTGCTTCAAACTGGTACCAATGGAGCCATCAGAGGTAGAGGAAGCCAATAAGGGAGAGA +ACAACAGCCTGTTACACCCCATCTGCCAGCATGGAATGGAGGACGAAGATGGAGAAGTGC +TGGTATGGAGATTTGACAGTAGCCTGGCACGGAGACACTTAGCCCGAGAGCTGCATCCGG +AGTACTACAAAGACTGCTGACACAGAAGTTGCTGACAAGGGGACTTTAAGTTGCTGACAA +AGGACTTTCCGCCCGGGACTTTCCAGGGGAGGCGCGGCCTGGGAGGGGCTGGGGAGTGGC +TAACCCTCAGAAGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGGGTCTCTCTTGTTA +GACCAGATTTGAGCCTGGGAGCTCTCTGGCTAGCAGGGGAACCACTGCTTAGAGCCTCAA +TAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAAC +TAGAGATCCCTCAGACCACTCTAGATAGTGTAAAAATCTCTAGCA +>CRF01_AE.CN.2007.0.07CNYN315.KF835502 KF835502 +GTGGCGCCCGAACAGGGACTTGAAAGTGAAAGTTAATAGGGACTCGAAAGCGGAAGTTCC +AGAGAAGCTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAG +CGGCGACTGGTGAGTACGCCAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTG +CGAGAGCGTCGGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGGTTACGGC +CAGGGGGAAGAAAAAAGTATCGGATGAAACATTTAGTATGGGCAAGCAGAGAGTTAGAAA +GATTTGCACTCAACCCTGGCCTTTTAGAAACAGCAGAAGGGTGCCAACAAATAATAGAAC +AAGTACAGCCAGTTCTCAAGACAGGATCAGAAGAACTTAGATCATTATTTAATTTAGTAG +TAACCCTCTGGTGCGTGCACCAAAGGATAGAGATAAAAGACACCAAGGAAGCTCTAGATA +AATTAGAGGAAGTACAAAATAAGAACAAGCAAAAGACACAGCAGGCAGCAGCTGACACAG +GAAGCAGCAGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATGG +TACATCAGCCTGTATCACCTAGAACTCTGAATGCATGGGTAAAGGTAGTAGAAGAAAAGG +GTTTTAACCCAGAAGTAATACCCATGTTCTCAGCATTATCAGAGGGAGCCACCCCACAAG +ATTTAAATATGATGCTAAATATAGTGGGGGGACACCAGGCAGCAATGCAAATGTTAAAAG +AAACCATCAATGAGGAAGCTGCAGAATGGGATAGGGTACACCCAGTACATGCAGGGCCTA +TTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCC +TTCAAGAACAAATAGGATGGATGACAAGCAATCCACCTATCCCAGTGGGAGATATCTATA +AAAGGTGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTTAGCATTT +TGGATATAAGACAAGGACCAAAAGAACCCTTCAGAGATTATGTAGATAGGTTCTATAAAA +CTCTCAGAGCAGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACCCTACTAG +TCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGAGCCACAT +TAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTAGCCATAAAGCAAGGGTTT +TGGCTGAGGCAATGAGCCACGTACAAAATACAAATATAATGATGCAGAGAGGCAATTTTA +AGGGCCCAAAAAGAATTAAGTGCTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATT +GCAGGGCCCCTAGAAAAAAGGGCTGCTGGAAATGTGGGAAGGAAGGACATCAAATGAAAG +ACTGTACTACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGAA +GGCCGGGAAATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCAGCAGAGAACTGGG +GGATGGGGGAGGAGCAGAAAGACTCTCCTCCTTCAATTTCCCTCAAATCACTCTTTGGCA +ACGACCCCTTGTCACAGTAAAAATAGGGGGACAGCTAAAAGAAGCTCTATTAGATACAGG +AGCAGATGATACAGTATTTGAAGAAATAAATTTGCCAGGGAAATGGAAACCAAAAATGAT +AGGGGGAATTGGAGGTTTTATCAAAGTAAGGCAATATGATCAGATACCTATAGAAATTTG +TGGAAAAAGAGCTATAGGTACAGTGTTAGTAGGACCTACACCTGTCAACATAATTGGACG +AAACATGTTGACTCAGGTTGGTTGTACTCTAAATCTCCCAATTAGTCCTATTGACACTAT +ACCAGTAACATTAAAGCCAGGAATGGATGGACCAAAGGTTAAACAATGGCCATTGACAGA +AGAAAAAATAAAAGCATTAACAGAAATTTGTAAGGAGATGGAAGAAGAAGGAAAGATCTC +AAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCTATAAAGAAAAAGGACAG +CACCAAATGGAGAAAATTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAGGATTTTTG +GGAAGTTCAATTAGGGATACCGCATCCAGCAGGATTAAAAAAGAAAAAATCAGTAACAGT +ACTAGATGTGGGAGATGCATATTTTTCAGTTCCTTTAGATGAAAGCTTTAGAAAGTATAC +TGCATTCACCATACCTAGTATAAACAATGAGACACCAGGAATCAGATATCAGTACAATGT +GCTGCCACAGGGATGGAAAGGATCACCAGCAATATTCCAGAGTAGCATGACAAAAATCTT +AGAGCCCTTTAGAATAAAAAATCCAGAAATGATTATCTATCAATACATGGATGATTTGTA +TGTAGGATCTGATTTAGAAATAGGGCAGCACAGGGAAAAAATAGAACAGCTAAGAGCTCA +TCTATTGAGCTGGGGATTTACTACACCAGACAAAAAGCATCAGAAGGAACCTCCATTCCT +TTGGATGGGATATGAGCTCCATCCTGACAAATGGACAGTCCAGCCTATAGAACTGCCAGA +AAAAGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAG +TCAAATTTATGCAGGGATTAAGGTAAAACAACTGTGTAAACTCCTCAGGGGAACTAAAGC +ACTAACAGAAGTAGTACCACTGACTGAAGAAGCAGAATTAGAGTTGGCAGAGAACAGGGA +GATTCTAAAAACCCCTGTGCATGGAGTATATTATGACCCATCAAAAGACTTAGTAGCAGA +AGTACAGAAACAAGGGCAGGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAA +TCTAAAAACAGGAAAATATGCCAGAAAAAGGTCTGCTCACACTAATGATGTAAGACAATT +AACAGAAGTGGTGCAAAAAATAGCCATGGAATGCATAGTAATATGGGGAAAGACCCCTAA +ATTTAGACTACCCATACAAAGAGAAACATGGGAAACATGGTGGATGGAATATTGGCAGGC +TACCTGGATTCCTGAATGGGAGTTTGTTAATACCCCTCCTCTAGTAAAATTATGGTACCA +ATTAGAAAAAGACCCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAGTAG +GGAGACTAAGCTAGGAAAAGCAGGGTATGTCACTGACAGAGGAAGACAAAAGATAGTTTC +CCTAACTGAGACAACAAATCAAAAGACTGAATTGCGTGCTATCCAGTTAGCCTTGCAGGA +TTCAGGATCAGAAGTAAATATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGC +ACAACCAGACAGGAGTGAATCAGAAGTAGTCAACCAAATAATAGAAGAGCTAATAAAAAA +GGACAAGGTCTACCTGTCATGGGTGCCAGCACACAAGGGGATTGGAGGAAATGAACAAGT +AGATAAATTAGTCAGTTCAGGGATCAGGAAAGTGCTATTTTTAGATGGAATAGATAAGGC +TCAAGAAGAACATGAAAGATATCACAGCAATTGGAGGACAATGGCTAGTGATTTTAATTT +GCCACCTATAGTGGCAAAGGAAATAGTAGCCAGCTGTGATAAATGTCAACTAAAAGGGGA +AGCTATGCATGGACAAGTGGACTGTAGTCCAGGGATATGGCAATTAGATTGCACACATCT +AGAGGGAAAAGTCATCCTGGTAGCAGTCCACGTGGCCAGTGGATATATAGAAGCAGAGGT +TATCCCAGCAGAAACAGGACAAGAGACAGCATACTTTCTGCTAAAATTAGCAGGAAGATG +GCCAGTGAAAGTAATACACACAGACAACGGTAGCAATTTCACCAGCGCTGCACTTAAAGC +AGCCTGTTGGTGGGCCAATGTCCGACAGGAATTTGGGATTCCCTACAATCCCCAAAGTCA +AGGAGTAGTAGAATCCATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTGAGAGATCA +AGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAA +AGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCAACAGACAT +ACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAG +GGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGC +AGTAGTAATACAAGACAATAGTGATATAAAAGTAGTACCAAGAAGGAAAGCAAAGATCAT +TAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGA +TCAGAACATGGAATAGTTTAGTAAAACATCATATGCATGTCTCAAAGAAAGCTAACCAGT +GGTTTTATAGACATCATTATGAAAGCCAGCATCCAAAGGTAAGTTCAGAAGTACATATCC +CAATAGGAGAAGCTAGATTAGTAATAAGAACATATTGGGGCTTGCAGACAGGAGAAAAGG +AATGGCACTTGGGTCATGGAGTCTCCATAGAATGGAGGCAGAGAAGTTATAGCACACAAA +TAGATCCTGACCTAGCAGACCAACTGATTCATCTACAATATTTTGACTGTTTTTCAGAAT +CTGCCATAAGGAAAGCCATATTAGGACAAGTAGTTAGTCGTAGGTGTGACTATCCATCAG +GACATAACAAGGTAGGATCCTTACAATATTTGGCATTGAAAGCATTAACAACACCAAAAA +GGATAAGACCACCTCTGCCTAGTGTTAAGAAATTAACAGAAGATAGATGGAACAAGCCCC +AGAAGATCAGGGGCCACAGAGACAACCCTACAATGAATGGACATTAGAACTGTTAGAGGA +GCTTAAAAATGAAGCTGTTAGACATTTTCCTAGGCCCTGGCTCCATGGCTTAGGAGAATA +CATCTATAACACTTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGAACTTTGCA +TCAACTACTGTTTGTTCATTACAGAATTGGGTGTCAGCATAGCAGAATAGGCATTATACC +AAGGAGAAGAGGCAGGAATGGAGCCGGTAGATCCTAAACTAGAGCCCTGGAATCATCCAG +GAAGTCAGCCTACAACTGCTTGTAACAAGTGTTACTGCAAAAAATGTTGCTGGCATTGCC +AAATATGCTTTCTGAAAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAAGCACC +GACGAGGAACTCCTCGCAGCAGTAAGAACCATCAGGATCCTCTACCAGAGCAGTGAGTAA +TAAGTAAATGTAATGACGCCTTTAGAAATTAGTGCAATAGTAGGACTAGTAGTAGCTCTA +ATCTTAGCAATAGTAGTGTGGACTATAGTAGCTATAGAATATAAGAAAATACTAAGGCAA +AGAAAAATAGACAGATTAATTAAAAGAATAAGAGAAAGAGAAGAAGACAGTGGAAATGAG +AGTGAGGGAGACACAGATGAATTGGCTAAACTTGTGGAAATGGGGGACTTTGATCCTTGG +GTTGGTGATAATTTGTAGTGCCTCAAACAACTTGTGGGTTACAGTTTATTATGGGGTTCC +TGTGTGGAGAGATGCAGATACCACCTTATTCTGTGCATCAGACGCCAAAGCACATGAGAC +AGAAGTGCACAATATCTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGA +AATAATCCTAGAAAATGTAACAGAAAATTTTAACATGTGGAAAAATAACATGGTAGAGCA +GATGCAGGAGGATGTAATCAGTTTATGGGATGAAAGTCTAAAACCATGTGTAAAGTTAAC +TCCTCTCTGCGTTACTCTAAAATGTACCAATGCTAATTTGAACAATGCTAATTTGACCAA +TACAACCAGTGATAGTTTGCTCAATATGACAGGCGAGGTAAAAAACTGTACTTTTAATAT +GACCACAGAAATAAGAGATAAGAAGCAGAAAGTCTACGCACTTTTTTATAGGCCTGATCT +AGTACAAATTAACAATAGCAATCCTAGAGAGTATATGTTAATAAATTGTAATACTTCAGT +CATTAAGCAGGCTTGTCCAAAGATATCCTTTGATCCAATTCCTATACATTATTGTGCTCC +AGCTGGTTATGCGATTTTAAAGTGTAATGATAAGAAATTCAATGGGACAGGGCCATGTAA +AAATGTCAGCTCAGTACAATGCACACATGGAATTAAGCCAGTGGTATCAACTCAATTGCT +GTTAAATGGCAGTCTAGCAGAAGAAGAGATAATAATCAGATCTGAAAATCTCACAAACAA +TGCCAAAACCATAATAGTGCAACTTAATACATCTGTAGAAATCAATTGTACCAGGCCCTC +CAACAATACAATTACAAGTACACGTATAGGACCAGGACAAATGTTCTATAGAACAGGAGA +CATAAAAGGAGACATAAGGAAAGCATATTGTGAGATTAATGGAACAAAATGGAATAAAAC +GTTAGAACAAGTAAGGAAAAAATTAAATAAGCACTTTAACAAGACCATAATATTTCAACC +ACCCTCAGGAGGAGATAGAGAAATTACAACGCATCATTTTAATTGTAGAGGGGAATTTTT +CTATTGCGATACAACAAGATTGTTTAATGATACTGACATAAAAAATAGTAGCAATATCAC +AATTCCATGCAGGATAAAACAAATTATAAACATGTGGCAGAGAGTAGGACAAGCAATGTA +TGCTCCTCCCATCAGTGGAAGTATTAATTGTGTATCAAAAATTACAGGAATACTGTTGAC +AAGAGATGGTGATAATAATGATACTGAAACCTTCAGACCTATAGGAGGGAATATAAAGGA +TAATTGGAAAAGTGAATTATATAAATATAAAGTAGTACAAATTGAACCACTAGGAATAGC +ACCCACCAGGGCACAGAGAAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGC +TATGATCTTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCT +GACGGTACACGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAG +GGCTATTGAGGCGCAGCAGCATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCA +GGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAAGATCAACAGTTCCTAGGACTTTGGGG +CTGCTCTGGAAAAATCATCTGCACCACTAATGTGCCCTGGAACTCCACTTGGAGTAATAA +ATCTTATGAAGAAATTTGGAACAACATGACATGGGTAGAATGGGAGAGAGAAATTAGCAA +TTACACAACCCAGATATATGAAATACTTGTGGAATCGCAGAACCAGCAGGACAAGAATGA +AAAGGATTTATTAGAATTGGATAAATGGGCAAATCTGTGGAATTGGTTTGGCATAACAAA +TTGGCTGTGGTATATAAGAATATTTATAATAATAGTAGGAGGTTTAATAGGCTTAAGAAT +ATTTTTTGCTGTGCTTTCTATAGTAAATAGAGTTAGGCAGGGATACTCACCTTTGTCTTT +CCAGACCCTTACCCATCAGCAGAGGGAACCAGACAGACCCGAAAGAATCGAAGAAGGAGG +TGGCGAGCAAGGCAGAGACAGATCCGTGCGATTAGTGAGCGGATTCTTAGCTCTTGCTTG +GGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTCATCTTGAT +TGTAACGAGGACTGTGGAACTTCTGGGACGCAGCAGTCTCCAGGGACTGAGACGGGGGTG +GGAAGTCCTCAAATATCTGGGGAATCTTCTGTCATATTGGGGACAGGAACTAAAGATTAG +TGCTATTTCTTTGCTTAACGCTACAGCAATAACAGTAGGGGGGTGGACAGACTGGGTTAT +AGAAGTAGCACAAAGAGCTGGGAGAGCCATTATCCACATACCTAGAAGAATCAGACAAGG +CTTTGAAAGGGTTTTGCTATAACATGGGAGGCAAGTGGTCAAAAAGTAGCAAAAGGGGAT +GGCCTCAGGTCAGGGAAAGAATAAGGCAAACTCCTCCAGCAGCAGCAGAAGGAGTAGGAG +CAGTATCTCAAGATCTAGATAAACATGGAGCAGTAACAAGTAGTAATATGAATAATCCTG +ATTCTGTCTGGCTGAAAGCACAAGAGGAAGACGAAGAGGGGGTAGGCTTTCCAGTCAGGC +CACAGGTACCTCTAAGACCAATGACTTATAAGGGAGCTTTGGATCTTAGCTTCTTTTTAA +AAGAAAAGGGGGGACTGGATGGGCTAATTTACTCCAAGAAAAGACAAGAGATCCTTGATT +TATGGGTCTATCATACACAAGGCTACTTCCCTGATTGGCACAACTACACACCAGGGCCAG +GGATTAGATTCCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGACCCAAAAG +ACATAGAGGAGGACAACAAAAGAGAAGACAGCTGCCTGCTACATCCCATAAGCCAGCATG +GAATAGAGGACGAAGACAGAGAAGTGCTGATGTGGAAGTTTGACAGTTCCCTAGCACGAA +GACACATAGCCCGAGAACTGCGTCCAGAGTTCTATAAAGACTGCTGACAAAGGAGTTTCT +AACTAGGACTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCGGGGCGGAATTGGGGAGT +GGTTAACCCTCAGAAGCTGCATAAAAGCAGCCGCTTCTCGCTTGTACTGGGTCTCTCTTG +TTAGACCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAGGGGAACCCACTG +>CRF01_AE.VN.2013.0.VN_474.MT635169 MT635169 +TCAATATTAACTGGGGGAAAATTAGATGCATGGGAAAAGATTAGGCATCTCCTATGGCAG +GAAGATGGCCAATAGATGCAAGTAGTGTGTGCCCGTCTGTGTTAGGACTCTGGTAACTAG +AGATCCCTCAGACCACTCTAGACGCCCGAACAGGGACTTGAAAGTGAAAGTTAATAGGGA +CTCGAAAGCGGAAGTTCCAGAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCA +CACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAATTTTTGACTAGCGGAGGCTA +GAAGGAGAGAGATGGGTGCGAGAGCGTCAATATTAACTGGGGGAAAATTAGATGCATGGG +AAAAAATTAGGTTACGGCCAGGGGGAAAGAAAAAATATCAACTAAAACATTTAGTATGGG +CAAGCAGAGAGTTGGAAAGATTCGCAATTAACCCTGGCCTTTTAGAAACAGCAGAAGGAT +GTCAACAAATATTAGAACAGTTACAGTCAACTCTCAAGACAGGGTCAGAAGAACTTAAAT +CATTATTTAACACAGTAGCAACCCTCTGGTGCGTGCACCAAAGGATAGAGATAAAAGACA +CAAAGGAAGCTTTGGATAAAATAGAGGAAGTACAAAACAAGAGCCAGCAAAAGACACAGC +AGGCAGCAGCTGGCCCAGGAAGCAGTAGCCAAGTTAGCCAAAATTATCCTATAGTGCAAA +ATGCACAAGGACAAATGGTACATCAGCCTGTATCACCTAGAACATTAAATGCATGGGTGA +AGGTAGTAGAAGAAAAGGGCTTTAATCCAGAAGTAATACCCATGTTCTCAGCATTATCAG +AGGGAGCCACCCCACAAGATTTAAATATGATGCTAAATATAGTGGGGGGACACCAGGCAG +CAATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGGGTACACC +CAGTACATGCAGGGCCTATTCCACCAGGCCAGATGAGGGAGCCAAGGGGAAGTGACATAG +CAGGAACTACCAGTACCCTTCAAGAACAAATAGGATGGATGACAAGTAATCCACCTATCC +CAGTGGGAGACATCTATAAAAGGTGGATAATCCTGGGATTGAATAAAATAGTAAGAATGT +ATAGCCCTGTTAGCATTCTGGACATAAGACAAGGGCCAAAAGAGCCCTTCAGGGACTATG +TAGATAGGTTCTATAAAACTCTCAGAGCGGAACAAGCTACACAGGAGGTAAAAAATTGGA +TGACAGAAACCTTGCTAGTCCAAAATGCAAATCCAGACTGTAAGTCCATTTTAAAAGCAT +TAGGAACAGGAGCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTA +GCCATAAAGCAAGAGTTTTGGCTGAGGCAATGAGCAACTTACAACAGGCAAATGTAATGA +TGCAGAGAGGCAATTTTAAGGGCCAGAAAAGAATTAAGTGCTTCAACTGTGGCAAAGAAG +GACATCTAGCCAGAAATTGCAGGGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGGAAGG +AAGGACATCAGATGAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGAAAAATTTGGC +CTTCCCACAAGGGAAGGCCGGGAAATTTTCCCCAGAGCCGAACAGAGCCAACAGCCCCAC +CAGCAGAGAACTGGGAGATGGAGAGGGAGACAACCTCCTTACTGAAGCAGGAGCAGAAGG +ACAAGGAATATCCTCCTCCTTCAGTCTCCCTCAAATCACTCTTTGGCAGCGACCCATTGT +CACAGTAAGAATAGGGGGACAGCTGAAAGAAGCTCTATTAGATACAGGAGCAGATGATAC +AGTATTAGAAGAGATAAATTTGCCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGG +AGGTTTTATCAAAGTAAGGCAATATGATCAGATACTTATAGAAATTTGTGGAAAAAAGGC +TATAGGTACAGTGTTGGTAGGACCTACACCTATCAACATAATTGGACGAAATATGTTGAC +TCAGATTGGTTGTACTCTAAATTTCCCAATTAGTCCTATTGACACTGTACCAGTAACATT +AAAGCCAGGAATGGATGGACCAAAGGTTAAGCAATGGCCATTGACAGAAGAAAAAATAAA +AGCATTAACAGAAATTTGTGAAGAAATGGAAAAGGAAGGAAAAATATCAAAAATTGGACC +TGAAAATCCATACAATACTCCAGTGTTTGCTATAAAGAAAAAGGACAGTACTAAATGGAG +GAAGTTAGTGGATTTCAGAGAGCTCAATAAAAGAACTCAGGACTTTTGGGAAGTCCAATT +AGGAATACCGCATCCAGCAGGTTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGG +AGATGCATATTTTTCAGTTCCTTTAGATGAAAGTTTTAGAAAGTATACTGCATTTACCAT +ACCTAGTACAAACAATGAGACACCAGGAACCAGATATCAGTACAATGTGCTGCCACAAGG +ATGGAAAGGATCACCAGCAATATTTCAGTGTAGTATGACAAAAATATTAGAGCCCTTTAG +AATAAAAAATCCAGAAATAGTTATCTATCAATACATGGATGACTTGTATGTAGGATCTGA +CTTAGAAATAGGGCAGCACAGAGCAAAAATAGAGGAGCTAAGAAGTCATCTATTAAGCTG +GGGATTTACTACACCAGACAAAAAGCATCAGAAGGAACCTCCATTCCTTTGGATGGGATA +TGAACTCCATCCTGACAAATGGACAGTTCAGCCTATAGAACTGCCAGAAAAGGACAGCTG +GACTGTCAATGATATACAGAAATTAGTGGGAAAGCTAAATTGGGCAAGTCAAATTTATCC +AGGGATTAAAGTAAAGCAACTGTGTAAACTCCTCAGGGGAACTAAAGCATTAACAGACAT +AGTACCACTGACTGAAGAAGCAGAATTAGAATTGGCAGAGAATAGGGAGATTCTAAAGGC +CCCTGTGCATGGAGTATATTATGACCCATCAAAAGACTTAGTAGCAGAAGTACAGAAACA +AGGGCAGGACCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTAAAGACAGG +AAAATATGCCAGAAAAAGGTCTGCTCACACTAATGATGTAAGACAATTAACAGAAGTGGT +GCAAAAAATAGCCACAGAAAGCATAGTAATATGGGGAAAGACCCCTAAATTTAGACTACC +CATACAAAAAGAAACATGGGAAACATGGTGGATGGAGTATTGGCAGGCTACCTGGATTCC +TGAATGGGAGTTTGTTAATACCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAAAAAGA +CCCTATAGTAGGAGCAGAGACTTTCTATGTAGATGGGGCAGCTAGTAGGGAAACTAAGCT +AGGAAAAGCAGGGTATGTCACTAACAGAGGAAGACAAAAGGTAGTTTCCCTAACTGAGAC +AACAAATCAAAAGACTGAATTACATGCGATCCATTTAGCCTTGCAGGATTCAGGATCAGA +AGTAAATATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGACAG +GAGTGAATCAGAAATAGTCAACCAAATAATAGAAGAGCTAATAAAAAAGGAAAAAGTCTA +TCTGTCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGT +CAGTGCAGGAATCAGGAAGGTGCTATTTTTAGATGGGATAGATAAAGCTCAAGAAGAACA +TGAAAGATATCACAACAATTGGAGAGCAATGGTTAGTGATTTTAATATACCACCTATAGT +AGCAAAGGAAATAGTAGCCAACTGTGATAAATGTCAACTAAAAGGGGAAGCTATGCATGG +ACAAGTGGACTGTAGTCCAGGAATATGGCAATTAGATTGTACACATCTAGAAGGAAAAGT +CATCCTGGTAGCAGTCCACGTGGCCAGTGGGTATATAGAAGCAGAAGTTATCCCAGCAGA +AACAGGACAGGAGACAGCATACTTTCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGT +AATACACACAGACAACGGTAGCAATTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTG +GGCCAATGTCCGACAAGAGTTTGGGATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGA +ATCCATGAATAAAGAATTAAAGAAAATCATAGGGCAGGTAAGAGAGCAAGCTGAACACCT +TAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGG +GGGGTACAGTGCAGGGGAGAGAATAATAGACATAATAGCAACAGATATACAAACTAAAGA +ATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGA +CCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACA +AGACAATAGTGATATAAAAGTAGTACCAAGAAGAAAAGCAAAGATCATTAGGGATTATGG +AAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAAAACATGGA +ACAGTTTAGTAAAACATCATATGTATGTCTCAAAGAAAGCTAAGAAGTGGGTTTATAAAC +ATCACTATGAAAGCCATCATCCAAAGGCAAGTTCAGAAGTACATATCCCACTAGAAGAGG +CTAAATTAGTAATAAAAACATATTGGGGTCTGCAGACAGGAGAAAAAGACTGGCACTTGG +GTCATGGAGTCTCCATAGAATGGAGGCAGAAAGAATATAGAACACAAATAGATCCTGACC +TAGCAGACCGACTGATTCATTTACAATATTTTGACTGTTTTTCAGACTCTGCCATAAGGA +AAGCCATATTAGGACAAGTAGTTAGACGTAGGTGTGACTATCCATCAGGACATAATAAGG +TAGGATCCCTACAATATTTGGCTCTGAAAGCATTAACAACACCAAAAAGGATAAAGCCAC +CTCTGCCTAGTGTTAAGAAATTAACAGAAGATAGATGGAACAAGCCCCAGGAGATCAGGG +GCCACAGAGAGAACCCTACATTGAATGGACATTAGAACTGTTAGAGGAGCTTAAAAATGA +AGCTGTTAGACATTTTCCTAGGACCTGGCTCCATGGCTTAGGACAGTACATCTATAACAC +TTATGGGGATACTTGGGAAGGGGTTCAAGTTATAATAAGAATTTTGCAACAACTACTGTT +TGTTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGCATTATACCAGGGAGAAGAGG +CAGGAATGGAGCCAGTAGATCCTAACCTAGAGCCCTGGAAGCATCCGGGAAGTAAACCTG +CAACTAATTGTAACAAGTGTTATTGTAAAAAATGCTGCTGGCATTGTCAACTATGCTTTC +TGAAAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCGGAAGCACCGACGAGGAACTC +CTCAGAGCAGTAAGGATCATCAAAATCCTGTACCAGAGCAGTAAGTAATAAGTATATGTA +ATGTCACCCTTGGAAATTAGTGCCATAGTAGGATTGATAATAGCGCTAATCTTAGCAATA +GTAGTGTGGACTATAGTAGCTATAGAACTTAAGAAAATATTAAGGCAAAGAAAAATAGAT +AAGTTAATTAAGAGAATAAGAGAAAGAGAAGAAGACAGTGGAAATGAGAGTGAAGGGGAC +ACAGATGAGTTGGCCAAACTTGTGGAAATGGGGGACTTTGATCCTTGGATTGGTGATAAT +TTGTAGTGCCTCAGACAACTTGTGGGTTACAGTTTATTATGGGGTTCCTGTGTGGAGAGA +TGCAGAGACCACCCTATTTTGTGCATCAGATGCCAAAGCACATGTGACAGAAGTGCACAA +TGTCTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAATAAAACTGAA +AAATGTAACAGAAAATTTTAACATGTGGAACAATAACATGGTAGAGCAGATGCATGAGGA +TGTAATCAGTTTATGGGATCAAAGTCTAAAGCCATGTGTAAGGTTAACTCCTCTCTGTGT +TACTTTAAATTGTACTGTTTTGACCAATGGTTCTTTTGAAAATATAACAGAGGAAGTAAA +AAACTGTACTTTTAATATGACCACAGATATAACAGAGGAAGTAAAAAACTGTACTTTTAA +TATGACCACAGACCTAAAAGATAAGAAGCAGAAGGTCTATGCCCTTTTTTATACGCTTGA +TATAGTACCAATTCATCCTAATAGTAATAGTAGCGAGTATAGGTTAACACATTGTAATAC +CTCAGTCATTAAGCAGGCTTGTCCAAAAATAACCTTTGATCCAATTCCTATACATTATTG +TACTCCAGCTGGTTATGTGCTTTTAAAGTGTGATGATAAGAAGTTCAATGGGACAGGGCT +ATGTAAAAATGTCAGCTCAGTACAATGCACACATGGAATTAAGCCAGTGGTATCAACTCA +ACTGCTGTTAAATGGCAGTCTCGCAGAAGAAGAAATAATAATCAGGTCTGAAAATCTCAC +AAACAATGCTAAAACCATAATAGTGCACTTTAATGAATCTGTAGTAATCAATTGTACCAG +ACCCTCCAACAATACAATAACAGGTATACATATAGGACCAGGACAAATGTTCTATAGAAC +AGGAGAGATAAAAGGGGATATAAGAAAAGCATATTGTGAAATTAATGGAACAGAATGGAA +TAAAGTTTTAAAACAGGTAGCTGGAAAACTAGAAGAGCACTTTAATAATAAGAGCATAAG +ATTTCAACCACATTCAGGAGGAGATCTAGAAATTACAACACATCATTTTAATTGTAGAGG +GGAATTTTTCTATTGCAACACAACAGGACTGTTTAATAGAACTTACAAAGACAAGAACTG +TATTGAGGGGTGTGATAACACTACTAACATCATACTCCCATGCAGGATAAAACAAATTGT +AAGAATGTGGCAAGAAGTAGGACAAGCAATGTATGCCCCTCCCATCAGTGGAATAATTAA +TTGTGTATCAAATATTACAGGAGTACTATTGACAAGAGATGGTGGTCAGAATGAGAGTGA +GACTATTGAGACCTTCAGACCTGGAGGAGGAAATATAAAGGACAATTGGAGAAGTGAATT +ATATAAATATAAAGTAGTACAAATTGAACCACTAGGAATAGCACCCACCAGGGCAAAGAG +AAGAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTATGATCTTTGGGTTCTT +AGGAGCAGCAGGAAGCACTATGGGCGCAGCGTCAATAACGCTGACGGTACAGGCCAGACA +ATTATTGTCTGGTATAGTGCAACAGCAAAGTAATTTGCTGAGAGCTATAGAGGCGCAACA +GCATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTCT +GGAGAGATACCTAAAAGATCAAAAGTTCCTAGGACTTTGGGGCTGCTCTGGAAAAATCAT +CTGCACCACTGCTGTGCCCTGGAACTCCTCTTGGAGTAATAAATCTTATGAAGAGATTTG +GGACCACATGACATGGATACAATGGGAGAGGGAAATTAGCAATTACACAAACCAAATATA +TGATATACTCACAGGATCACAGAACCAGCAGGACAAGAATGAACAGGATCTGTTAGAATT +GGACAAATGGGCAAGTCTGTGGAATTGGTTTGACATAACAAACTGGCTATGGTATATAAA +AATATTTATAATAATAGTAGGAGGTTTAATAGGTTTAAGAATAATTTTTGCTGTGCTTTC +TATAGTAAATAGAGTTAGGCAGGGATACTCACCTTTGTCTTTCCAGACCCCTATCCACCA +GCAGAGGGAACCCGACAGACCCGAAGAAACCGAAGAAGGAGGTGGCGAGCAAGGCAGAGG +CAGATCCGTGCGATTAGTCAGCGGATTCTTAGCACTTGCTTGGGACGATCTACGGAGCCT +GTGCCTCTTCAGTTACCACCTCTTGAGAGACTCCATATCGATTGCAAAGAGGACTGTGGA +ACTTCTGGGACGCAGCAGTCTCAAGGGACTGAGACGGGGCTGGGAGGGCCTCAAATATCT +GGGGAATCTTCTGGTATATTGGGGACAGGAACTGAAAATTAGTGCTATTTCTTTGCTTGA +TACTACAGCAATAGCAGTAGCGGGGTGGACAGATAGGGTTATAGAAGTAGTACAAAGAGT +TTGGAGAGCCTTTCTCCATATACCTAGAAGAATCAGACAGGGCTTAGAAAGGGCTTTGCA +ATAACATGGGAGGCAAATGGTCAAAAAGTAGCATAGTGGGATGGCCTCAGGTCAGGGAAA +GAATAAGGCGAACTCCACCAGCAGCAGAAGGAGTAGGAGCAGTATCTCAAGATTTAGCTA +AACATGGAGCAGTAACAAGTAGTAATATGAATAATGCTGATAGTGTCTGGCTAAGAGCAC +AAGAGGAAGATGATGAGGGGGTAGGCTTTCCAGTCAGGCCACAGGTACCTCTAAGACCAA +TGACTTTTAAGGCAGCTTTTGATCTTAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGATG +GGCTAATTTACTCCAAGAAAAGACAAGAGATCCTTGATTTATGGGTCTATCATACACAAG +GCTTCTTCCCTGACTGGCACAACTACACACCAGGACCAGGGACCAGATTCCCACTGTGTT +TTGGATGGTGCTTCAAGCTAGTACCACTTGACTCAAGAGAAGTAGAAGAGGACACCAAAG +GAGAAAACACCTGCCTGTTACACCCCATGAGCCAACAGGGGCAAGATGATGAAGACCGAG +AAGTGCTAATGTGGCAGTTTGACAGTGCCCTAGCACGAAGACACATAGCCCGAGAACAAC +ACCCAGAGTTCTATAAAGACTGCTGACAGAGAAGTTTCTAACTAGTGACANAGAAGTTTC +TAACTAGGACTTCCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCGGGGCGGAGTTGGGGA +GTGGCTAACCCTCAGATGCTGCATAAAAGCAGCCGCTTTCCGCTTGTACTGGGTCTCTCT +TGTTAGCCCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAGGGGAACCCACTGCTTAAGCC +TCAAGCAGTGGGTTCCC +>CRF01_AE.LA.2011.0.VI50F3912.MG760424 MG760424 +CCCCATGAGCCAGCATGGAATGGAGGGCGAAGAGAGAGAAGTGCTGATATGGAAGTTTGA +CAGTGCCCTAGCACGACAACACATAGCCCGAGAGAAGCATCCGGAGTTCTATAAAGACTG +CTGACAAAGAAGTTTCTGACTAGGACTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGTCG +GGGCGGAGTTGGGGAGTGGCTAACCCTCAGATGCTGCATAAAAGCAGCCGCTTTCTGCTT +GTACTGGGTCTCTCTTGTTAGACCAGGTCGAGCCCGGGAGCTCTCTGGCTAGCAGGGGAA +CCCACTGCTTAAAGCCTCAATAAAGCTTGCCTTGAGTGCTTAAAGTGGTGTGTGCCCATT +TGTGTCAGGACTCTGGTAACTAGAGATCCCTCAGACCACTCTAGACTGAGTAAAAATCTC +TAGCAGTGGCGCCCGAACAGGGACTTGAAAGTGAAAGTTAATAGGGACTCGAAAGCGGAA +GTTCCAGAGAAGTTCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGC +GAGAGCGGCGACTGGTGAGTACGCCAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGAT +GGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTAGGTT +ACGGCCAGGAGGAAAGAAAAAATATAAAATAAAACATTTAGTATGGGCAAGCAGAGAATT +AGAGAGGTTTGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAAATAAT +AGAACAGTTACAGGCAAATCTCAAGACAGGATCAGAAGAACTTAAATCATTATTTAATAC +AGTAGTAACCCTCTGGTGCGTACACCAAAGGATAGAAGTAAAAGACACCAAGGAAGCTTT +AGATAAAGTAGAGGAAGTACAAAAGAAGAGCCAGCAAAAGACACAGCAGGCAGCAGCTGA +CAAGGGAAACAGCGGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCA +GATGGTACATCAGCCTATATCACCTAGAACTTTGAATGCATGGGTGAAAGTAGTAGAAGA +AAAGGGTTTTAATCCAGAAGTAATACCCATGTTCTCAGCATTATCAGAGGGAGCCACCCC +ACAAGATTTAAATATGATGTTGAATATAGTGGGGGGGCACCAGGCAGCAATGCAAATGTT +AAAAGAAACCATCAATGAGGAAGCTGCAGATTGGGATAGGGCACACCCAGTACATGCAGG +GCCTATTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAG +TACCCTTCAAGAACAAATAGGATGGATGACAAACAATCCACCTATCCCAGTGGGAGACAT +CTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACTAG +CATTTTGGACATAAGACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGATTCTA +TAAAACTCTCAGGGCAGAACAAGCTTCACAGGAAGTAAAAAATTGGATGACAGAAACTTT +GCTAGTCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGAGC +TACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCCAGCCATAAAGCAAG +GGTTTTGGCTGAGGCAATGAGCCATGTACAACAGGCAAATGTAATGATGCAGAGAGGCAA +TTTTAAGGGCCAGAGAAAAATTAAGTGCTTCAACTGTGGCAAAGAAGGACACCTAGCCAG +AAATTGCAGGGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGACAGGAAGGACATCAAAT +GAAAGACTGCACTGAGAGACAGGCTAATTTTTTAGGGAGATTTTGGCCTTCCAACAAGGG +AAGGCCAGGGAATTTTCCTCAGAGCAGACCAGAGCCATCAGCCCCRCCAGCRGAAAACTG +GGGGATGGGGGAAGAGATGAACAAGGAACCCTCTCCTCCTTCAGTTTCCCTCAAATCACT +CTTTGGCAACGACCCCTTGTYACAGTAAAAATAGGAGGACAGCTGAAAGAAGCTCTATTA +GATACAGGAGCAGATGATACAGTATTAGAAGAGATAAATTTGCCAGGAAAATGGAAACCA +AAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGGCAATATGATCAAATACYTATA +GAAATTTGTGGAAAAAAGGCTATAGGTACAGTRTTAGTAGGACCTACACCTGTCAACATA +ATTGGACGAAATATGTTGACTCAGATTGGTTGTACTCTAAATTTCCCCATTAGTCCTATT +GACACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGACCAAAGGTTAAACAGTGGCCA +TTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAAGAGATGGAAGAGGAAGGA +AAAATCTCAAAAATTGGGCCTGAGAATCCATACAATACTCCAGTATTTGCTATAAAGAAG +AAGGACAGCACTAAATGGAGGAAATTAGTAGATTTCAGAGAGCTCAATAAAAGAACTCAG +GACTTTTGGGAAGTTCAATTAGGAATACCACATCCAGCAGGGTTAAAAAAGAAAAAATCA +GTAACAGTACTAGATGTGGGAGATGCATATTTTTCAGTTCCTTTAGATGAAAACTTTAGA +AAATATACTGCATTCACCATACCTAGTATAAACAATGAGACACCAGGAATCAGATATCAG +TACAATGTGCTGCCACAGGGATGGAAAGGATCACCGGCAATATTCCAGAGTAGCATGACA +AAAATCTTAGAGCCCTTTAGAATAAAAAATCCAGACATAGTTATCTATCAATACATGGAT +GACTTATATGTAGGATCTGATTTAGAAATAGGGCAGCACAGAACAAAAATAGAGGAGCTA +AGAGCTCATCTATTGAGCTGGGGATTTACTACACCAGATAAAAAGCATCAGAAGGAACCC +CCATTCCTTTGGATGGGATATGAACTCCATCCTGATAGATGGACAGTCCAGCCTATAGAA +CTGCCAGAAAAGGACAGCTGGACTGTCAATGATATACAGAAATTAGTGGGAAAACTAAAT +TGGGCAAGTCAAATTTATGCAGGGATAAAAATAAAGCAACTGTGTAAACTCCTCAGGGGA +ACTAAAGCACTAACAGAAGTAGTACCACTAACTGAAGAAGCAGAATTAGAATTGGCAGAG +AACAGGGAGATTCTAAAAACCCCTGTGCATGGAGTATATTATGACCCATCAAAAGACCTA +GTAGCAGAAGTACAGAAACAAGGGCAGGACCAATGGACATATCAAATTTATCAAGAGCCA +TTTAAGAATCTAAAAACAGGAAAATATGCCAGAAAAAGGTCTGCTCACACTAATGATGTA +AGACAATTAACAGAAGTGGTGCAAAAAATAGCCACAGAAAGCATAGTTATATGGGGAAAG +ACCCCTAAATTTAGACTACCCATACAAAGAGAAACATGGGAAACATGGTGGATGGAGTAT +TGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTTAATACCCCTCCTCTAGTAAAACTA +TGGTACCAATTAGAAAAAGACCCCATAATAGGAGCAGAGACTTTCTATGTAGATGGGGCA +GCTAGTAGGGAGACTAAGCTAGGAAAAGCAGGATATGTCACTGACAGAGGAAGGCAAAAG +GTAATTTCCCTAACTGAGACAACAAATCAAAAGACTGAATTACACGCGATCCATTTAGCC +TTGAAGGACTCAGGATCAGAAGTAAATATAGTAACAGATTCACAATATGCATTAGGAATC +ATTCAGGCACAACCAGACAGGAGTGAATCAGAAGTAGTCAACCAAATAATAGAGGAGCTA +ATAAAAAAGGAAAAGGTCTACCTATCATGGGTTCCAGCACATAAAGGGATTGGAGGAAAT +GAACAAGTAGATAAATTAGTCAGTTCAGGAATCAGGAAGGTACTGTTTTTAGATGGGATA +GATAAGGCTCAAGAAGAACATGAAAGATATCATAGCAATTGGAGAACAATGGCTAGTGAT +TTTAATTTGCCACCTATAGTAGCAAAGGAAATAGTAGCCAACTGTGATAAATGTCAATTA +AAAGGGGAAGCCATGCATGGACAAGTGGACTGCAGTCCAGGAATATGGCAACTAGATTGC +ACACATCTAGAAGGAAAAGTCATCCTGGTAGCAGTCCACGTGGCCAGTGGATATATAGAA +GCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTTCTGCTAAAGTTAGCA +GGAAGATGGCCAGTAAAAGTAATACACACAGACAATGGTAGTAATTTCACCAGCGCTGCA +GTTAAAGCAGCCTGTTGGTGGGCCAATGTCCGGCAGGAATTTGGGATCCCCTACAATCCC +CAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGCAAATCATAGGAAAGGTA +AGAGATCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGTATTCATTCACAATTTT +AAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACATAATAGCA +ACAGACATACAAACTAAAGAATTACAAAAGCAAATTACAAAAATTCAAAATTTTCGGGTT +TATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGT +GAAGGGGCAGTAGTAATACAGGACAATAGTGATATAAAAGTAGTACCAAGAAGAAAAGCA +AAGATCATTAGAGACTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAG +GATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCATATGTATGTCTCAAAGAAAAC +TAAAAAGTGGTCTTATAGACATCATTATGAAAGCCAGCATCCAAAGGTAAGTTCAGAAGT +GCATGTCCCACTAGGAGAGGCTATCTTAGTAATAAGAACATATTGGGGACTACAGACAGG +AGAAAAGGACTGGCAGTTGGGTCATGGAGTCTCCATAGAATGGAGACAGAGAACATATAG +TACACAAATAGATCCTGACCTAGCAGACCAACTGATTCATCTACACTATTTTGACTGTTT +TTCAGACTCTGCCATAAGAAAAGCCATATTAGGACAAGTAGTTAGACATAGGTGTGAATA +TCCATCAGGACATAACAAGGTAGGATCCCTACAATATTTGGCACTGAAAGCATTAACAAC +ACCAAAAAGAATAAGGCCACCTCTGCCTAGTGTTAAGAAATTGACAGAAGATAGATGGAA +CAAGCCCCAGAAGATCAAGGACCACAGAGAGAACCCCACAATGAATGGACATTAGAACTG +TTAGAGGAGCTTAAAAATGAAGCTGTCAGACATTTTCCTAGGCCTTGGCTCCATGGCTTA +GGACAGTACATTTATTACACTTATGGGGATACTTGGGAAGGGGTTGAAGCTATAATAAGA +GTTTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCAACATAGCAGAATAGGC +ATTATACCAGGGAGAAGAGGCAGGAATGGAGCCAGTAGATCCTAACCTAGAGCCCTGGAA +TCATCCGGGAAGTCAGCCTACAACTGCTTGTAACAATTGTTACTGTAAAAAWTGTTGCTG +GCATTGCCAACTATGCTTTCTGAAAAAAGGCTTAGGCATCTCCCATGGCAGGAAGAAGCG +GAAGCACAGACGAGGAACTCCTCAGAGCCGTGAGRATCATCAATATCCTATACCAGAGCA +GTAAGTACTAAGTATATGTAATGTTACCTTTGGAAATTAGTGCAATAGTAGGACTGGTAG +TAGCTTTAATAGCAGCAATAGTAGTGTGGACTATAGTAGCTATAGAATTTAGGAGAATAC +TAAGGCAAAGAAAAATAGACAGRTTAGTTAAGAGAATAAGGGAAAGAGMAGAAGACAGTG +GAAATGAGAGTGAAGGAGACACAGATGARTTGGCCAAACTTGTGGAAATGGGGGACTTTG +ATCCTTGGGTTGGTGATAATTTGTAGTGCCTCAAACAACTTGTGGGTTACAGTTTATTAT +GGGGTTCCTGTGTGGAGAGATGCAGATACCACTCTATTTTGTGCATCAGATGCCAAAGCA +CATGAGACAGAAGTGCACAATGTCTGGGCCACACATGCCTGTGTACCCACAGACCCCAAC +CCACAAGAAATACACCTGGAAAATGTAACAGAAAATTTTAACATGTGGAAAAATAACATG +GTAGAGCAGATGCAGGAGGATATAATCAGTTTATGGGATGAAAGTCTAAAGCCATGTGTA +AAGTTAACTCCTCTCTGTGTTACTTTAAATTGTACCAATGRAAYCAAKGTCAGGAATGGA +ACCGAGGCCAACAACATAACAGGAACTAACATAACAGAAACAGATGAAGTAAAAAACTGT +ACTTTTAATGTAACCACAGAAATAAGGGATAAGAAGCAGAAGGTCCGTGCACTTTTTTAT +AAGCTTGATGTAGTACAAATGGGGAATAAGAGTAATGAGTATAGGTTAATAAATTGTAAT +ACTTCAGTCATTAAGCAGGCTTGTCCAAAGATATCCTTTGATCCAATTCCTATACATTAT +TGTACTCCAGCTGGTTATGTGATTTTAAAGTGTAATGAAAAGGATTTCAATGGGACAGGA +CCATGTAAAAATGTCAGCTCAGTACAATGCACACATGGAATTAAGCCAGTGGTATCAACT +CAATTGCTGTTAAATGGCAGTCTAGCAGAAGGCAAGATAATAATCAGATCTGAAAACCTC +ACAAACAATGCTAAAACCATAATAGTGCACCTTAATAAATCTGTAGAAATCAATTGTACC +AGACCCTCCAACAATAGAAGAACAAGTGTACGTATAGGACCAGGACAAGTATTCTATAGA +AATGGAGAAATAATAGGAGATATAAGAARAGCATCTTGTGAGGTTAATAGAACAGAATGG +AATAAAGTTTTAAAACAGGTAAAGCAAAGGTTAAGAGAGCACTTTAATAAGAATATAACC +TTTAAACCAYCTTCAGGAGGAGATCTAGAAGTCACAATGCATCATTTTAATTGTAGAGGG +GAATTTTTCTATTGTAATACAACACAACTGTTTAATAATATTGTTAATAATRCTAACAAT +AMTGGAACTATCAGACTTCCATGCAAAATAAAGCAAATTATAAACATGTGGCAGGAAGTA +GGGCAAGCAATGTATGCTCCTCCCATCAGTGGGAAAATTAATTGCATATCAAACATTACA +GGAATACTATTGACAAGAGATGGTGGTAATGCTAGTGGTAATGCTAGCGAGGAGATCTTC +AGACTTACAGGAGGAAATATAAAGGACAATTGGAGAAATGAATTATATAAATATAAAGTA +GTACAAATTGATCCACTAGGAATAGCACCCACCAAGGCAAAGAGAAGAGTAGTGGAGAGA +GAAAAAAGAGCAGTGGGAATAGGAGCTATGATCTTTGGGTTCTTAGGAGCAGCAGGAAGC +ACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATA +GTGCAACAGCAAAGCAATTTGCTGAGAGCTATAGAGGCGCAGCAGCATCTGTTGCAACTC +ACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGGAAAGATACCTAAAA +GATCAAAGGTTCCTAGGACTTTGGGGCTGCTCTGGAAAAACCATCTGCACCACTGCTGTG +CCCTGGAACTCCACTTGGAGTAATAAATCTTTTGATGAGATTTGGAACAACATGACATGG +ATAGAATGGGAAAGAGAAATTAGCAATTACACAAGTCAAATCTATGAGATACTTACAGAA +TCGCAGAACCAGCAGGAAARGAATGAAAAGGAGTTGTTAGAATTGGATAAGTGGACAAGT +CTGTGGAATTGGTTTGACATATCAAATTGGCTGTGGTATATAAAAATATTTATAATGATA +GTAGGAGGTTTAATAGGTTTAAGAATAATTTTTGCTGTGCTTTCTATAGTAAATAGAGTT +AGGCAGGGATACTCACCTTTGTCCTTCCAGACCCCTACCCATCATCAGAGGGAGGAACCC +GACCGACCCGGAAGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAGACAGATCAGTGAGA +TTAGTGAGCGGATTCTTAGCACTTGTCTGGGACGACCTGCGGAGCCTGTGTCTCTTCAGC +TACCACCGCTTGAGAGACTTCACCTTGATTGCAGCGAGGACTGTGGAACTTCTGGGACAC +AGCAGTCTCAAGGGACTGAGACGGGGGTGGGAAGGCCTCAAATATCTGGGGAATATTCTG +TTGTATTGGATCCAGGAACTAAAAACTAGTGCTATTTCTTTGTTTGATACTATAGCTATA +GCAGTAGCGGGGTGGACCGATAGGGTTATAGAAGYAGCACAAGGAGCTTGGAGAGCCATT +CTCCTCATACCTAGAAGAATCAGACAGGGCTTAGAAAGGGCTTTGCTATAACATGGGAGG +CAAGTGGTCAAAATGGCCTCAGGTCAGGGAAAGAATAAGACAAACTCCTCCAGCAGCAGA +AGGAGTAGGAGCAGTATCTCAAGATCTAGCTAAACATGGAGCAGTAACAAGTAGTAATAT +GAATAATGCTGATGATGTCTGGGTGAGAACACAAGAGGAAGAAGAGGAGGTAGGCTTTCC +AGTCAGGCCCCAGGTGCCCCTGAGACCAATGACTTATAAGGAAGCTTTTGATCTTAGCTT +CTTTTTAAAAGAAAAGGGGGGACTGGATGGGCTAGTTTACTCCAAGAAAAGACAAGAGAT +CCTTGATTTATGGGTCTATAATACACAGGGCTTCTTCCCTGACTGGCAWAACTACACACC +AGGGCCAGGGRTCAGATACCCACTGTGTTTTGGATGGTGCTTCAAGTTAGTACCAGTTGA +CCCAAGAGAAGTAGAGGAGGACAACAAAGGAGAAAACAACAGCCTGTTACACCCCATGAG +CCAGCATGGAATGGAGGACGAAGAGAGAGAAGTGCTGATATGGAAGTTTGACAGTGCCCT +AGCAAGACAACACATAGCCCGACAGAAGCATCCGGAGTTCTATAAAGACTGCTGACAAAG +AAGTTTCTGACTAGGACTTCCGCTGGGGACTTTCCAGGGGAGGTGTGGTCGGGGCGGAGT +TGGGGAGTGGCTAACCCTCAGATGCTGCATAAAAGCAGCCGCTTTCTGCTTGTACTGGGT +C +>CRF01_AE.TH.2008.0.AA067a_WG12.JX447458 JX447458 +TGGTAACTAGAGATCCCTCAGACCACTCTAGACTGAGTAAAAATCTCTAGCAGTGGCGCC +CGAACAGGGACTTGAAAGCGAAAGTTAATAGGGACTCGAAAGCGAAAGTTCCAGAGAAGT +TCTCTCGACGCAGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGCGGCGACT +GGTGAGTACGCCAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGT +CAGTATTAAGTGGGGGGAAATTAGATGCATGGGAAAAAATTCGGTTACGGCCAGGGGGAA +GGAAAAAATATAGAATGAAACATTTAGTATGGGCAAGCAGAGAGTTAGAAAGATTCGCAC +TTAACCCTGGCCTGTTAGAAACAGCAGAAGGATGCCAACAAATCATAGAACAGTTACAGT +CAACTCTCAAGACAGGATCAGAAGAACTTAAATCCTTATTTAATACAGTAGTAACCCTCT +GGTGTGTACACCAAAGGATAGAGGTAAGAGACACCAAGGAAGCTTTAGATAAAATGGAGG +AAGCACAAAAGAGGAGCCAGCAAAAGACACAGCAGGCAGCAGCTGGCACAGGAAGCAGCA +GCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATGGTACATCAGC +CCGTATCACCTAGAACTTTGAATGCATGGGTAAAAGTAGTAGAAGAGAAGGGTTTTAACC +CAGAAGTAATACCCATGTTCTCAGCATTATCAGAAGGAGCCACCCCACAAGACTTAAATA +TGATGCTAAATATAGTGGGGGGACACCAGGCAGCAATGCAAATGTTAAAAGAAACCATCA +ATGAGGAAGCTGCAGAATGGGATAGGGTACACCCAGTACATGCAGGGCCTATTCCACCAG +GCCAGATGAGGGAACCAAGAGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAAC +AAATAGGGTGGATGACAAGCAATCCATCTATCCCAGTGGGAGACATCTATAAAAGGTGGA +TAATCCTGGGATTAAATAAGATAGTAAGAATGTATAGCCCTGTTAGCATCTTGGACATAA +GACAAGGGCCAAAGGAACCCTTCAGAGACTATGTAGATAGATTCTATAAAACTCTCAGAG +CTGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACCTTGCTAGTCCAAAATG +CGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGAACAGGAGCTACATTAGAAGAAA +TGATGACAGCATGCCAGGGGGTAGGAGGACCTAGCCATAAAGCAAGGGTTTTGGCTGAGG +CAATGAGCCAAGCACAAGCACAAAATGTAAATATACTGATGCAGAGAGGCAATTTTAAGG +GCCAAAAAAGAATTAAATGCTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAACTGCA +GGGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAAGACT +GCACTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAAGGGAAGGCCGGGAA +ATTTTCCTCAGAGCAGACCAGAGCCAACAGCCCCACCTGCAGAAAACTGGAGGATGGAGG +AAGAGAGGACCTCCTTACAGAAGCAGGAACAGAAAGACAAGGAACATCCTCCTCCCTTAG +TTTCCCTCAAATCACTCTTTGGCAACGACCCCTTGTCACAGTAAAAATAGAAGGACAGTT +GAAAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTGGAAGATATAAATTTGCC +AGGAAAGTGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAGGTAAGGCAATA +TGATCAGATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTATTAGTAGGACC +TACGCCTGTCAACATAATTGGACGAAATATGTTGACTCAGATTGGTTGTACCTTAAATTT +CCCAATTAGTCCTATTGACACTGTACCAGTAACATTAAAGCCAGGAATGGATGGACCAAA +GGTTAAACAGTGGCCACTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTAAAGA +GATGGAAGAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGT +ATTTGCTATAAAGAAAAAGGACAGCACCAAATGGAGGAAATTAGTAGATTTCAGAGAGCT +CAATAAAAGAACTCAGGACTTTTGGGAAGTTCAATTAGGAATACCGCATCCAGCAGGTTT +AAAAAAGAAAAAATCAGTGACAGTACTAGATGTGGGAGATGCATATTTTTCAGTTCCTTT +GGATGAAAGCTTTAGAAAGTATACTGCATTCACCATACCTAGTACAAACAATGAGACACC +AGGAATTAGATATCAATACAATGTGCTGCCACAGGGATGGAAGGGATCACCGGCAATATT +CCAGAGCAGCATGACAAAAATCTTAGAGCCCTTTAGAATAAAAAATCCAGAAATGATTAT +TTATCAATACATGGRTGACCTGTATGTAGGATCTGATTTAGAAATAGGGCAGCACAGAAT +AAAAATAGAGGAGCTAAGAGCTCATCTATTGAGCTGGGGATTTACTACACCAGACAAAAA +GCATCAGAAGGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGACAAATGGAC +AGTCCAACCTATAGAACTGCCAGAAAAAGACAGCTGGACTGTCAATGATATACAGAAATT +AGTGGGAAAACTAAATTGGGCCAGTCAAATTTATGCAGGGGTTAAGGTAAAGCAACTGTG +TAAACTCCTCAGGGGAGCTAAGGCACTAACAGACATAGTACCATTGACTGAAGAAGCAGA +ATTAGAATTGGCAGAGAACAGGGAGATTCTAAAAACCCCTGTGCATGGAGTATATTATGA +CCCATCAAAAGACTTAGTAGCAGAAGTACAGAAACAAGGGCAGGACCAATGGACATATCA +AATTTATCAAGAGACATTTAAAAATCTGAAAACAGGAAAATATGCAAGAAAAAGGTCTGC +TCACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAAATAGCCACAGAAAGCAT +AGTAATATGGGGAAAGACCCCTAAATTTAGATTACCCATACAAAGAGAAACATGGGAAAC +ATGGTGGACGGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAATTTGTCAATACCCC +TCCTCTAGTAAAATTATGGTACCAATTAGAAAAAGACCCCATAGTAGGAGCAGAGACTTT +CTATGTAGATGGGGCAGCTAATAGGGAAACTAAGCTAGGAAAAGCAGGGTATGTCACTAA +CAAAGGAAGGCAAAAGGTAGTTTCCCTAACTGAGACAACAAATCAAAAGACTGAATTACA +TGCAATCTACTTAGCCTTGCAGGATTCAGGAGCAGAAGTCGATATAGTAACAGACTCACA +ATATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGAATCAGAAGTAGTCAACCA +AATAATAGAGGAACTAATAAAAAAGGAAAAAGTCTACCTGTCATGGGTACCAGCACACAA +AGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCAGGAAYCAGGAAGGTACT +ATTTTTAGATGGGATAGATAAGGCTCAAGAAGAACATGAAAGATATCACAGCAATTGGAG +AGCAATGGCTAGTGATTATAATTTGCCACCTGTAGTAGCAAAGGAAATAGTAGCCAACTG +TGATAAATGTCAGCTAAAAGGGGAAGCTATGCATGGACAAGTAGACTGTAGTCCAGGGAT +ATGGCAATTAGATTGCACACATCTAGAAGGAAAAGTCATCCTGGTAGCAGTTCACGTGGC +CAGTGGATATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTT +TCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAATACACACAGACAACGGTAGCAA +TTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCCAATGTCCGACAGGAATTTGG +GATCCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAA +AATCATAGGACAGGTAAGAGAGCAAGCTGAACACCTTAAGACAGCAGTACAAATGGCAGT +ATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAAT +AATAGACATAATAGCAACAGACATACAAACTAGAGAATTACAAAAACAAATTACAAAAAT +TCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAA +ACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGACAATAGTGATATAAAAGTAGT +ACCAAGAAGAAAAGCAAAAATCATCAGGGATTATGGAAAACAGATGGCAGGTGATGATTG +TGTGGCAGGTAGACAGGATGAGGATTAAAACATGGAACAGTATAGTAAAACATCATATGT +ATATCTCAAAGAAAGCTAAAAAGTGGTCTTATAGACATCATTATGAAAGCCAGAATCCAA +AAGTAAGTTCAGAAGTACACATCCCACTAGAAGAGGCAAAATTAGTAATAAAAACATATT +GGGGTCTGCAGACAGGAGAAAAGGACTGGCAATTGGGTCATGGAGTCTCCATAGAATGGA +GGCAGAGAAACTATAGCACACAAATAGATCCTGACCTAGCAGACCGACTGATTCATCTAC +AATATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAAGCCATATTAGGACAAGTAGTTA +GACGTAGGTGTGAATATCCATCAGGACATAACAAGGTAGGATCCCTACAATATTTGGCAC +TGAGAGTATTRACGACACCAAAAAAGATAAAGCCACCTCTGCCTAGTGTGRAGAAATTAA +CAGAAGATAGATGGAACAAGCCCCAGAGGATCAGGGGCCACAGAGAGAACCCCACAATGA +ATGGGCATTAGAACTGTTAGAGGAACTTAAAAATGAAGCTGTGAGACACTTTCCTAGGCC +CTGGCTCCATGGCTTAGGACAGTACATCTATAATAATTATGGGGATACTTGGGAAGGGGT +TGAAGCTATAATAAGAATTTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCA +ACATAGCAGAATAGGCATTATGCCAGGGAGAAGAGGCAGGAATGGAGCCGGTAGATCCTA +ACCTAGAGCCCTGGAATCATCCGGGAAGTCAGCCTACAACTAATTGTAGCAATTGTTACT +GTAAAAAATGTTGCTGGCATTGCCAACTATGCTTTCTGAAAAAAGGCTTAGGCATCTCCT +ATGGCAGGAAGAAGCGGAAGCACCGACGAAGAACTCCTCAGAACAGTAAAGATCATCAGA +ATCCTATACGAAAGCAGTAAGTAATAAGTATATGTAATGACACCTTTGGAAATTAGTGCA +ATAGTAGGACTGATAGTAGCTCTAATCTTAGCAATAGTAGTGTGGACTATAGTAGCTCTA +GAATATAAGAAAATACTAAGGCAAAGAAAAATAGACAGGTTAATTAAGAGAATAGGAGAA +AGAGCAGAAGACAGTGGAAATGAAAGTGAAGGGGATATGGATGACTTGGCCAAACTTGTG +GAGATGGGTGACTTTGATCATTGGGTTGGTGATAATTAGTAGTGCCTCAGACAACTTGTG +GGTTACAGTTTATTATGGAGTTCCTGCGTGGAAAGATGCAAATACCACCCTATTTTGTGC +ATCAGATGCCAAGGCACATGAAACAGAAGTGCACAATGTCTGGGCCACATATGCCTGTGT +ACCCACAGATCCCAACCCTCAAGAAATACCCATGGAAAATGTAACAGAAAATTTTCACAT +GTGGAAAAATAACATGGTAGAGCAGATGCAGGAGGATGTAATCAGTTTATGGGATGAAAG +TCTAAAGCCATGTGTGAAGTTAACCCCTCTCTGCGTTACTTTAAATTGTACCGAGGCTAA +AATTACTTGTAATTCCACTGTCACTTCCAATATCACTTCCAATAACACTTGCATAGAATT +CATAAAAAATGAAGTAAAAAATTGTTCTTTTAATATGACCACAGAAGTGACAGATAAGAA +GAAGCAGGTCCATGCACTTTTTTATAGGCTTGATATAGTACAGATGGGAGATGAGAGTAC +GTATAGGTTAATAAATTGTAATACTTCAGTCATTAAGCAGGCTTGTCCAAAGATATCCTT +TGATCCAATTCCTATACATTATTGTACTCCAGCTGGTTATGCGATTCTAAAGTGTAATGA +GAAGAATTTCACTGGGACAGGGCCATGTAAAAATGTCAGCTCAGTACAATGCACACATGG +AATTAAGCCAGTGGTATCAACTCAATTGCTGTTAAATGGCAGCCTAGCAGAAGAGGAGAT +AGTAATCAGATCTGAAAATCTCACAAACAATGTCAAAACCATAATAGTACACCTTAATAA +ATCTGTAGAAATCAGTTGTACTAGACCCTCCAACAATACAAGAACAAGTATATCTATAGG +ACCAGGACGAGCATTCTATAGAATAGGAGACATAACAGGAGATGTAAGGAAAGCATATTG +TGAGATTAATGGAACAAAATGGAATGAAACTTTAAAGCAGGTAGCTGGAAAATTAAAAGA +GTACTTTAATAAGACAATACTCTTTGAACCACCCTCAGGAGGAGATCTAGAAATTACAAT +GCATCATTTTAATTGTAGAGGGGAATTTTTCTATTGCAATACAACAAAATTGTTTAATAG +TACAGAAAATGGGACCAAGGAGGAGTTTAAGGGCACTAATGGCACTATCATACTTCCATG +CAAGATAAAGCAAATTGTAAGAATGTGGCAGGGAACAGGGCAAGCAATGTATGCTCCTCC +CATCAGTGGAGCAATTAATTGTGTATCAAATATTACAGGAATACTATTAACAAGAGATGG +TGGTAATGCTAATAACTCTAACTCTACTGAGAACTCTACTGAGATATTCAGACCTGGAGG +AGGAGATATAAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAATACAAATTGA +ACCACTAGGAATAGCACCCACCAAGGCAAGAAGAAGAGTGGTGGAGAGAGAGAAAAGAGC +AGTGGGAATAGGAGCTATGATCTTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGC +GGCGTCAATAACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACAGCA +AAGCAATTTGCTGAGGGCTATAGAGGCGCAGCAGCATATGTTGCAACTCACAGTCTGGGG +CATTAAACAGCTTCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAAGATCAACAGTT +CCTAGGACTTTGGGGCTGCTCTGGAAAAGTCATCTGCACCACTAATGTGCCCTGGAACTC +CACTTGGAGTAATAAATCTTTGAGTGAGATTTGGGAAAACATGACATGGGTAGAATGGGA +GAGAGAAATTAGCAATTACACAAGACAAATATATGAGATACTCACAGAATCGCAGAACCA +GCAGGATAAGAATGAAAAAGATTTGTTAGAGTTGGACAAATGGGCAAGTCTGTGGAATTG +GTTTAGCATAACAAAATGGCTGTGGTATATAAAAATATTTATAATGATAGTAGGAGGCTT +AATAGGTTTAAGAATAATCTTTGCTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATA +CTCACCTTTGTCTTTCCAGATCCCTTCCCATCATCAGAGGGAACCCGACAGGCCCGAAAG +AATCGAAGAAGGAGGTGGCGAGCAAGGCAGAGGCGGATCAGGGAGATTAGTGAGCGGATT +CTTATCACTTGCCTGGGACGACCTACGGAGCCTGTGCCTCTTCTGCTACCACCTCTTGAG +AGACTTCATCTTGATTGCAGCGAGGACTCTGAGCACGGGACTGAGACGGGGGTGGGAAGT +CCTCAAATATCTGGGGAATCTTCTGTTATATTGGAGCCAGGAACTAAAAATTAGTGCTAT +TTCTTTGTTTGATGCTACAGCAATAGCAATAGCGGGGTGGACAGATAGGGTTATAGAAGT +AGTGCAAAGAGCTTGCAGAGCTGTTCTCCACATACCTAGAAGAATCAGACAGGGCTTAGA +AAGGGCTTTGCTATAACATGGGAGGCAAGTGGTCAAAAAGTAGCATAGTGGGATGGCCTC +AGGTCAGGGAAAGAATAAGGCGAACTCCTCCAGCAACAAAAGAAGTAGGAGCAGTATCTC +AAGATCTAGATAAACATGGAGCAATAACAAGTAGTAATATAACTAATGAGGATTGTGGCG +GGCTGAGAGCACAAGAGGAAGAGGACGAAGGAGTAGGCTTTCCAGTCAGGCCGCAGGTAC +CTTTAAGACCAATGACTTTTAAGGGAGCTTTTGATCTTAGCTTCTTTTTAAGAGAAAAGG +GGGGACTGGAGGGGCTAATTTACTCCAAGAGAAGACAAGAAATCCTTGACTTATGGGTCT +ATCATACACAAGGCTACTTCCCTGATTGGCACAACTATACACCAGGGCCAGGAATCAGAT +ACCCACTGTGTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGATCCAAGAGAAGTAGAGG +AGGACAACAAAGGGGAAAACAACTGCCTGTTACACCACATGAGCCAGCATGGAATAGAGG +ACGAAGAAGGAGAAGTGCTGATGTGGAAGTTTGACAGCGCCCTAGCACGAAGACACATAG +CCCGAGAACAGCACCCAGAGTTCTATAAAGACTGCTGACAAAGAAGTTTCTAACTGGGAC +TTCCGCTGGGGACTTTCCAGGGGAGGTGTGGCCGGGGCGGAGTTGGGGAGTGGCTAACCC +TCAGATGCTGCATAAAAGCAGCCGCTTTTCGCTTGTACTGGGTCTCTCTTGTTAGACCAG +GTCGAGCCCGGGAGCTCTCTGGCTAACAGGGAACCCACTGCTTA +>CRF01_AE.GB.2014.0.14727_1_60.3.MF109621 MF109621 +ATGGGTGCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGG +TTACGGCCAGGGGGAAAGAAAAAATATCACATAAAACATATAGTATGGGCAAGCAGAGAG +TTGGAAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAGCAACTA +ATAGAACAGCTACAGTCAACTCTCCAGACAGGATCAGAAGAACTTAAATCATTATTTAAT +ACAATAGCAACCCTCTGGTGCGTACACCAAAGGATAGAGATAAAAGACACCAAGGAAGCT +CTAGATAAAATAGAGGAAGTACAAAGAAAGAGTCAGCAAAAGACACAGCAGGCAGCGGCT +GGCACAGGAAGCAGCAGCAAAGTCAGCCAAAATTACCCTATAGTGCAAAATGCGCAAGGC +GCAATGGTACATCAAGCCATGTCACCTAGAACTTTAAATGCATGGGTGAAAGTAGTAGAA +GAAAAGGGTTTTAACCCAGAAGTAATACCCATGTTCTCAGCACTATCAGAAGGAGCCACC +CCACAAGACATAAATATGATGCTAAATATAGTGGGGGGACATCAGGCAGCAATGCAAATG +TTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGGTTACACCCAGTACATGCA +GGGCCTATTCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGATATAGCAGGAACTACT +AGTACCCTTCAAGAACAAATAGGATGGATGACAAGCACTCCACCTATCCCAGTAGGGGAC +ATCTATAAAAGGTGGGTAATCCTGGGATTAAATAAGATAGTAAGAATGTACAGCCCTACT +AGCATTTTGGACATAAAACAAGGGCCAAAAGAACCCTTCAGAGACTATGTAGATAGGTTT +TATAAAACTCTCAGGGCAGAACAAGCTACACAGGAGGTAAAAAACTGGATGACAGAAACC +TTATTAGTCCAAAATGCGAATCCAGACTGTAAGTCCATTTTAAAAGCATTAGGGACAGGA +GCTACATTAGAAGAAATGATGACAGCATGCCAGGGAGTGGGAGGACCTAGCCATAAGGCA +AGGGTTTTGGCTGAGGCAATGAGCACAGTACAACATACAAATATAATGATGCAGGGAGGC +AATTTTAAGGGCCAGAGAAAAATTAAGTGTTTCAATTGTGGCAAAGAAGGACACCTAGCC +AGAAATTGCAGAGCCCCTAGAAAAAAGGGTTGTTGGAAATGTGGGAAAGAAGGACATCAA +ATGAAAGACTGCAATGAAAGACAGGCTAATTTTTTAGGAAGACTTTGGCCTTCCCACAAG +GGAAGGCCAGGGAATTTTCCTCAGAGCAGGCCAGAGCCAACAGCCCCACCAGCAGAAAAC +TGGGGGATGAGGGAAGAGATGACTTCCTCACCGAAGCAGGAGCAGAAAGACAGGGAACCT +TCCTTTAGTTTCCCTCAAATCACTCTTTGGCAACGACCCATTGTTACCGTAAAAATAGGA +GGACAGCTGAGAGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATA +AATTTGCCAGGAAAATGGAAACCAAAAATGATAGGAGGAATTGGAGGTTTTATTAAAGTA +AGGCAATATGATCAGATATCTATAGAAATTTGTGGAAAAAAGGCTGAAGGTACAGTGCTA +GTAGGACCTACACCCGTCAATATAATTGGACGAAATATATTGACTCAGCTTGGTTGTACT +TTAAATTTCCCAATTAGTCCTATTGACACTGTACCAGTAACATTAAAGCCAGGAATGGAT +GGACCAAAGGTTAAACAATGGCCATTAACAGAAGAAAAAATAAAAGCATTAACAGAAATT +TGTGAGGATATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAAT +ACTCCAGTATTTGCCATAAAGAAAAAGGATGGCACCAAATGGAGGAAATTAGTAGATTTC +AGAGAACTCAATAAAAGAACTCAGGATTTTTGGGAAGTTCAATTAGGAATACCACATCCA +GCAGGTTTAAAAAAGAAAAAATCAGTAACAGTACTAGATGTAGGAGATGCATATTTTTCA +GTTCCTTTAGATGAAAACTTTAGAAAGTATACTGCATTCACCATACCTAGTACAAACAAT +GAGACACCAGGAATCAGATATCAGTATAATGTGCTACCACAGGGATGGAAAGGATCACCA +GCAATATTCCAGAGTAGCATGACAAAAATCTTAGAGCCCTTTAGAACAAAAAATCCAGAC +ATGGTTATCTATCAATACATGGATGACTTGTATGTAGGATCTGATTTAGAAATAGGGCAG +CACAGAGCGAAAATAGAGGAGCTAAGAGCTCATCTATTGAGCTGGGGATTTACTACCCCA +GACAAAAAACATCAGAAGGAACCTCCATTCCTTTGGATGGGATATGAACTCCATCCTGAC +AGATGGACAGTCCAGCCTATAGAACTGCCAGAAAAAGACAGCTGGACTGTCAATGATATA +CAGAAATTAGTGGGAAAGCTAAATTGGGCAAGTCAAATTTATGCAGGGATTAAAGTAAAG +CAACTATGTAGACTCCTCAGAGGAACTAAAGCATTAACAGACATAGTACCACTGACTGAA +GAAGCAGAATTAGAGTTGGCAGAGAACAGGGAGATTCTAAAAACCCCTGTGCATGGAGTA +TATTATGACCCAGCAAAAGACTTAGTAGCAGAAGTACAAAAACAAGGGCAGGACCAATGG +ACCTATCAAATTTATCAAGAGCCATTTAAAAATCTAAAAACAGGAAAATATGCCAGAAAA +AGGTCTGCTCACACTAATGATGTAAGACAATTAGCAGAAGTGGTGCAAAAAATAGCCACA +GAAAGCATAGTGATATGGGGAAGGACCCCTAAATTTAGATTACCTATACAAAGAGAAACA +TGGGAGACATGGTGGACAGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAATTTGTT +AATACCCCTCCTTTAGTAAAATTGTGGTACCAATTAGAAAAAGAACCCATATTAGGAGCA +GAGACTTTCTATGTAGATGGGGCAGCTAGTAGAGAGACTAAGCTAGGAAAAGCAGGGTAT +GTCACTGACAGAGGAAGGCAAAAGGTAATTCATCTAACTGAGACAACAAATCAAAAGACT +GAATTACAGGCGATCCATTTAGCCTTGCAGGATTCAGGATCAGAAGTAAATATAGTAACA +GACTCCCAATATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAGTCAGAAATA +GTCAACCAAATAATAGAGGAGCTAATAAAAAAGGAAAAGGTCTACCTGTCATGGGTACCA +GCACATAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTTCAGGAATCAGG +AAGGTGCTATTTTTAGATGGAATAGATAAGGCTCAAGAAGAACATGAAAGATATCACAGT +AATTGGAGAACAATGGCTAGTGATTTTAATTTGCCACCTGTAGTAGCAAAGCAAATAGTA +GCCAACTGTGATAAATGTCAACTAAAAGGGGAAGCTATGCATGGACAAGTGGACTGTAGT +CCAGGAATATGGCAATTAGATTGCACGCATCTAGAAGGAAAAGTCATCCTGGTAGCAGTC +CACGTGGCCAGTGGGTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACA +GCATACTTTCTGCTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAATACACACAGACAAC +GGTAGCAATTTCACCAGCGCTGCAGTTAAAGCAGCCTGTTGGTGGGCCAATGTCCATCAG +GAATTTGGGATCCCCTACAATCCTCAAAGTCAAGGAGTAGTAGAATCTATGAATAAGGAA +TTAAAGAAAATCATAGGGCAGGTAAGAGAGCAAGCTGAACACCTTAAAACAGCAGTACAA +ATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGG +GAAAGAATAATAGATATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATT +ACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGA +CCAGCAAAACTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGACAATAGTGATATA +AAAGTGGTGCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGT +GATGATTGTGTGGCAGGTGGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACA +TCATAAATATGTCTCAAAGAAAGCTAGAAAGTGGGTTTATAAACATCACTATGAAAGCCA +GAATCCAAAGGTAAGCTCAGAAATACATATCCCACTAGGAGACTATAATAGTAATAAAAA +CATATTGGGGTCTGCAGACAGGAGAAAAGGACTGGCACTTGGGTCATGGAGTCTCCATAG +AATGGAGGCAGACAAATTATAGCACACAAATAGATCCTGACCTAGCAGACCGACTAATTC +ATCTACAATATTTTGACTGTTTTTCAGACTCTGCCATAAGGAAAGCTACATTAGGACAAG +TAGTTAGACATAGGTGTGAATACCCATCAGGACATAACAAGGTAGGATCCCTACAATATT +TGGCACTGAAAGCATTAACAACACCAAAAAAGATAAAGCCACCTCTGCCTAGTGTTAGGA +AATTAACAGAAGATAGATGGAACAAGCCCCAGAAGACCAGGGACCACAGAGAGAACCCCA +CAATGAATGGACACTAGAACTGTTAGAGGAGCTTAAAAATGAAGCAGTCAGACATTTTCC +TAGGCCATGGCTCCATGGCTTAGGACAATACATTTATAACACTTATGGGGATACTTGGGA +AGGGGTTGTAGCTATAATAAGAATTTTGCAACAACTGCTGTTTGTTCATTTCAGAATTGG +GTGTCAACATAGCAGAATAGGCATTTTGCCAGGGAGAAGAGGCAGGAATGGAGCCGGTAG +ACCCTAACCTAGAGCCCTGGAAACATCCAGGGAGTCAGCCTGCAACCGCTTGTAGCAAGT +GTTACTGTAAAAAATGTGTCTGGCATTGTCAACTATGCTTTCTGAAAAAAGGCTTAGGCA +TCTCCCATGGCAGGAAGAAGCGGAAGCACCGACGCGGAACTTCTCAGAACAGTAAGGATC +ATCAAGACCCTATACGAAAGCAGTAAGTGTATATGCTATGNCTTTAGAAATTAGTGCAAT +AGTAGGACTGGTAGTAGCGCTAATCTTAGCAATAGTAGTGTGGACTATAGTAGGTATAGA +ACTAAGTAAAATACTGAGACAAAGAAAAATAGACAGGATAATTGAAAGAATAAGAGAAAG +GGCAGAAGATAGTGGAAATGAGAGTGAAGGAGACACAGAGGAATTGGCCAAACTTGTGGA +AATGGGGACTTTGATCCTTGGGTTGGTGATGATGTGTAGTGCAGCAAACTTGTGGGTTAC +AGTTTATTATGGGGTTCCTGTGTGGAGAGATGCGGAAACTACCCTATTTTGTGCATCAGA +TGCTAAAGCACATGACACAGAAGCGCACAATGTCTGGGCCACACATGCCTGTGTACCCAC +AGACCCCAACCCACAAGAAATACACATGGAAAATGTAACAGAAAATTTTAACATGTGGAA +AAATAAAATGGTAGACCAGATGCAGGAGGATGTAATCAGTTTATGGGATCAAAGTCTAAA +GCCATGTGTAAAGTTAACTCCTCTCTGTGTTACTTTAAATTGTATCTTCCAGTAGTGTAA +ACAGTAGTAGAAATGAAGTAAGAAACTGTTCTTTTAATATGACCACAGAACTAAGAGATA +AGAGGAAACAGGTCTATGCACTTTTTTATAAGATTGATATAGTACCAATNTATAGGTTAA +TAAATTGTAATACTTCAGTCATTAAGCAGGCTTGCCCAAAGATGTCCTTTGAACCAATTC +CTATACATTATTGTACTCCAGCTGGTTATGCGCTTTTAAAGTGTAATGATAAAAATTTTA +ATGGGACAGGGCCATGTAAAAATGTCAGTTCAGTACAATGCACACATGGAATTAGGCCAG +TAGTATCAACTCAATTGCTGTTAAATGGCAGTCTAGCAGAAGAGGAGATAATAATCAGGT +CTGAAAATATCACAAACAATGCTAAAATCATAATAGTGCACCTTAATAAAACTGTAGAAA +TCAATTGTACCAGACCCTCCAACAATACAAGAACAAGTATGACTAGAGGACCAGGACACG +TATTCTATAGAACAGGAGATATAATAGGAGATATAAGAAAAGCATATTGTGAGGTCAATA +GAACAAAATGGAATGAAACTATAACACAGGTAGCTAGAAAATTAAGAGAACACTTTAATA +AGACAATAGAGTTTCAACCACCCTCAGGAGGAGATCTAGAAATTACAACACATCATTTTA +ATTGTAGAGGGGAATTTTTCTATTGCAATACAACAAACCTGTTTAATATCATACTTCCAT +GCAGAATAAAGCAAATTGTAAACATGTGGCAGGGAGTAGGACAAGCAATGTATAATCCTC +CCATCAGAGGAATAATTAATTGTGTATCAAATATCACAGGAATACTGTTGACAAGAGATG +GTGGNGAGACCTTCAGACCTGGAGGAGGAAACATAAAGGACAATTGGAGAAGTGAATTAT +ACAAATATAAAGTAGTACAAATTGAACCACTAGGAATAGCACCCTCCAAGGCAAGGAGAA +GAGTGGTGGAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTATGATCTTTGGGTTCTTAG +GAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAAGCCAGACAAT +TGTTGTCTGGTATAGTGCAACAGCAAAGCAATTTGCTGAGGGCTATAGAGGCGCAACAGC +ATCTGTTGCAACTCACAGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTGTGG +AAAGATACCTAAAAGATCAAACGTTCCTAGGACTTTGGGGCTGCTCTGGAAAAACTATCT +GCACCACCAATGTGCCCTGGAACTCCACTTGGAGTAATAAATCTTATGATGATATTTGGA +ACAACATGACATGGACACAATGGGAGAGAGAAATTAGCAATTACACAAACCACATATATA +CAGTACTCACAGAATCGCAGAACCAGCAAGACAGGAATGAAAAGGATTTGCTAGAATTGG +ATAAATGGGCAAGTCTGTGGAGCTGGTTTGATATATCAAACTGGCTGTGGTATATAAAAA +TCTTTATAATGATAGTAGGAGGTTTAATAGGTCTAAGAATAATTTTTGCTGTGCTTTCTA +TAGTAAATAGAGTTAGGCAGGGATACTCACCTTTGTCTTTCCAGACCCCTACCCATCAAC +AGAGGGAGCAGACAGGCCCGAAAGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAAACAG +ATCGATTCGATTTGCGGGCGGATTCTTAGCTCTTGTCTGGGACGACCTACGGAGCCTGTG +CCTCTTCAGCTACCACCTCTTGAGAGACTTCACCTTGATTGCAGCGAGGACTGTGGAACT +CCTGGGACGCAGGGGGTGGGAAGGCCTCAAATATCTGGGGAATCTTCTGATATATTGGAG +CCAGGAATTACAAACTAGTGCTGTTTCTTTGTTTGATACTATAGCAGTAGCAGTAGCAGG +GTGGACAGATAGGGTTATAGAAGTAGCACGAGGAGCTGGAAGAGCCATTCTCCATATACC +TAGAAGAATCAGACAGGGTTTAGAAAGGGCTTTGCAATAACATGGGAAACAAGTGGTCAA +AAGGATGGTCTCAGGTCAGGGAAAGAATAAGACAAGCAGAAGGAGTAGGAGCAGTCTCTC +AAGATCTAGCTAGACATGGAGCAGTAACAAGTAGTAATATAAATAATCCTGATCTTGTCT +GGCTGGAAGCACAAGAGGAGGAGGTAGGCTTTCCGGTCAGGCCGCAAGTACCCCTAAGAC +CAATGACTTATAAAGCAGCTGTTGATCTTAGCTTCTTTTTAAAAGAAAAGGGGGGACTGG +AAGGGCTAATTTACTCTGAGAAAAGAAAAGAGATCCTTGACTTATGGGTTTATCATACAC +AAGGCTTCTTCCCTGATTGGCATAACTACACACCAGGGCCAGGGATTAGATTCCCACTGT +GTTTTGGATGGTGCTTCAAGCTAGTACCAGTTGACCCAAGAGAAGTAGAGGAGGACACCA +AAGGAGAAAACAACTGCCTGTTACACCCCATGAGCCAACATGGACAAGAAGACGGAGAAC +GACAAGTGCTGATGTGGAAGTTTGACAGTGCCCTAGCACGAAGACACATAGCCCGAGAAC +TGCATCCAGATTACTAG +>CRF02_AG.NG.2009.0.09NG_SC61.JN248592 JN248592 +GTGCGAGAGCGTCAGTGTTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTGA +GGCCAGGAGGAAAGAAACAATATAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGG +AAAGATTCGCACTTAACCCTGGCCTTTTAGAAACAGCAGAAGGATGTCAACAGCTAATGG +AACAGTTACAATCAACTCTTAAGACAGGATCAGAAGAACTTAAATCATTATTTAATACAT +TAGCAACCCTTTGGTGTGTACATCAAAGGATAGACATAAGAGACACCAAGGAAGCTTTAG +ATAAAGTAGAAGAAATGCAAAAGAAGAGCAAACAAAAGACACAGCAGGCAGCCGCTGCCG +CAGGAAGCAGCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGACAAATGGTCCATC +AGCCCATGTCACCTAGGACTTTAAACGCATGGGTAAAGGTAATAGAAGAAAAGGGTTTCA +GCCCAGAAGTAATACCCATGTTTACAGCATTATCAGAGGGAGCCACCCCACAAGATTTAA +ATATGATGCTAAACATAGTGGGGGGACACCAGGCAGCAATGCAGATGTTAAAAGATACCA +TCAATGAGGAAGCTGCAGAATGGGACAGGACACATCCAGTACAAGCAGGGCCTATTCCAC +CAGGCCAGCTGAGGGAACCAAGGGGAAGTGACATAGCAGGAACCACTAGTACCCTTCAAG +AACAAATAGGATGGATGACAGGCAATCCACCTATCCCAGTGGGAGAAATCTATAAAAGAT +GGATAGTTCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACA +TAAGACAAGGACCAAAAGAACCCTTTAGAGATTATGTAGATAGGTTCTTTAAAACTTTGA +GAGCTGAACAAGCTACGCAGGAGGTAAAAAACTGGATGACAGAAACCCTGCTGGTCCAAA +ATGCGAATCCAGACTGTAAGAACATTTTAAGAGCATTGGGACAAGGGGCTACATTAGAAG +AAATGATGACAGCATGTCAGGGAGTAGGAGGACCTGGCCATAAAGCAAAAGTTTTGGCTG +AGGCAATGAGTCAAGTACAACAGACCAACATAATGATGCAGAGAGGCAATTTTAGGGGCC +AGAGAACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAAGG +CCCCTAGGAAAAGGGGTTGTTGGAAATGTGGGAAGGAAGGACACCAAATGAAAGACTGCA +CTGAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGGCCAGGAA +ATTTTCCTCAGAACAGACTGGAACCAACAGCCCCACCAGCAGAGAGTGTTGGGATGAGGG +AAGAGGCAACCTCCTCTCAGAAGCCGGAACCAGGGGACAAGGATCTTTACCCTCCTTTAA +CCTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACAGTAAACATAGGGGGACAGCT +AATAGAAGCTCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAGTTTACC +AGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGGGGTTTTATCAAAGTAAGACAGTA +TGATCAGATAAGTATAGAAATTTGTGGAAAAAAGGCCATAGGTACAGTATTAGTAGGACC +TACACCTGTCAACATAATTGGACGAAATATGTTGACTCAGATTGGTTGTACTTTAAATTT +TCCAATTAGTCCTATTGAAACTGTGCCAGTAAGATTAAAGCCAGGAATGGATGGCCCAAA +GGTCAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGACATTTGTACAGA +GATGGAAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGT +ATTTGCCATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACT +CAATAAGAGAACTCAAGACTTCTGGGAGGTCCAATTAGGAATACCTCATCCCGCGGGATT +AAAAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCCCT +AGATCCAGATTTCAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACC +AGGAATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAGGGATCACCAGCAATATT +TCAAGCAAGCATGACAAAAATCTTAGAACCCTTTAGAGCAAAAAATCCAGAGGTGGTGGT +CTACCAATATATGGATGATTTATATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGC +AAAAATAGAGGAGTTAAGAGAACATCTACTGAGATGGGGACTTACTACACCAGACAAAAA +ACATCAGAAAGAACCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGAC +AGTTCAGCCCATACAGCTGCCAGACAAGGAAAGCTGGACTGTCAATGATATACAGAAATT +AGTGGGAAAACTAAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAGGCAACTGTG +TAAACTCCTCAGGGGAGCCAAAGCCCTAACAGATATAGTACCACTGACTGAGGAAGCAGA +ATTAGAATTGGCAGAAAACAGGGAAATTCTAAAAGAACCTGTACATGGAGTGTACTATGA +CCCAACAAAAGACTTAGTAGCAGAAATACAGAAACAGGGGCAAGACCAATGGACATACCA +AATATATCAAGAGCCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGC +CCACACTAATGATGTAAAACAATTAACAGAGGTAGTGCAAAAGGTGTCTATGGAAAGCAT +AGTAATATGGGGAAAGACACCTAAATTTAGACTGCCCATACAAAAGGAAACATGGGACGC +ATGGTGGATGGAGTATTGGCAGGCTACCTGGATTCCTGATTGGGAGTTTGTCAATACCCC +CCCTCTAGTAAAATTATGGTACCAATTAGAGAAAGAACCCATAGCAGGGGCAGAAACTTT +CTATGTAGATGGGGCAGCCAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTCACTGA +TAGGGGAAGACAAAAGGTGGTTCCCCTAACTGAGACCACAAATCAAAAGACTGAATTACA +GGCAATTCATCTAGCCTTGCAGGATGCTGGATCAGAAGTAAATATAGTAACAGACTCACA +GTATGCATTAGGAATCATTCAGGCACAACCAGACAGAAGTGAATCAGAGTTAGTCAATCA +AATAATAGAGGAGCTAATAAAAAAGGACAGAGTATACCTGTCATGGGTACCAGCACACAA +AGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTAGTGGAATCAGGAAAGTACT +ATTTTTAGATGGTATAGATAAAGCCCAAGAAGAGCATGAAAGATATCACAGCAATTGGAG +AGCAATGGCTAGTGATTTTAATCTGCCACCTRTAGTGGCAAAAGAAATAGTGGCCAGCTG +TGATAAATGCCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAAT +ATGGCAGTTAGATTGTACACATCTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGC +CAGTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAAACAGCATACTT +TATATTAAAATTAGCAGGAAGATGGCCAGTAAAAGTAATACACACAGATAATGGCAGCAA +TTTCACCAGTGCTGCAGTAAAAGCAGCATGTTGGTGGGCAGATGTCACACAAGAATTTGG +AATTCCCTATAACCCCCAAAGTCAAGGAGTAGTGGAGTCTATGAATAAAGAATTAAAGAA +AATCATTGGGCAGGTTAGAGATCAAGCTGAACACCTGAAGACAGCAGTACAGATGGCAGT +ATTCATTCACAATTTTAAAAGAAAAGGGGGGATAGGGGGGTACAGTGCAGGGGAAAGGAT +AATAGACATAATAGCATCAGATATACAAACTAAAGAACTACAAAAACAAATTACACAAAT +TCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAA +ACTACTCTGGAAAGGTGAAGGGGCGGTAGTAATACAAGACAATAACGACATAAAGGTAGT +GCCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTG +TGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAGTTTAGTAAAACATCATATGT +ATATCTCTAAGAAAACTCAGGGTTGGTTTTATAGACATCACTATGAAAGTAGGCATCCAA +AAGCAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTAATAGTAAGAACATATT +GGGGTCTGCATACAGGGGAAAGAGATTGGCACTTGGGTCATGGGGTCTCCATAGAATGGG +AACAGAAAAGGTATAGTACACAAATAGATCCTGACCTAGCAGATCAACTGATTCACCTGC +ATTATTTTGACTGTTTTACAGACTCTGCCATAAGGAAAGCCCTATTAGGACAAGAAGTTA +GACCTAGGTGTGAATATCAAGCAGGGCATAGAAAGGTAGGATCGCTACAATATTTGGCAC +TGAAAGCATTAGTAACACCAACAAGGAGAAAGCCCCCTTTACCGAGTGTTAAGAAGTTAA +CAGAAGACAGATGGAACAAGTCCCAGAAGACCAGGGGCCACAGAGGGAGCCATTCAATGA +ATGGGCATTAGAATTGTTAGAAGAGCTTAAACATGAAGCTGTCAGACACTTTCCTAGGCC +ATGGCTCCATGGACTAGGACAACATATCTATAACACATATGGGGATACTTGGGAAGGGGT +TGGAGCTATAATAAGAATCCTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCA +ACATAGCAGAATAGGCATTATTCGAGGGAGAAGAGGCAGGAATGGAGCTGGTAGATCCTA +GCCTAGAGCCCTGGAACCATCCGGGAAGTCAGCCCACAACTGCTTGTAACAATTGCTACT +GTAAAAAATGCTGCTGGCATTGCCAATTGTGCTTTCTGAACAAGGGCTTAGGCATCTCCT +ATGGCAGGAAGAAGCGGAGACGCCGACGAGGAACTCCTAAGAGCCGTCAGGATCATCAAA +ATCCTGTACCAAAGCAGTGAGTAGTAACAATTAGTATCTGTGATGCAAGTTTTAGGAATA +GCTTCAATAGTAGGGCTAATAGTAGCATCCATAGCAGCCATAGTTGTGTGGACCATAGTA +TTCATAGAGTATAGGAAAATAAGGAAAGAGAGAAAGATAAGTAGGTTACTTGATAGAATA +AGAGAAAGAGCAGAAGATAGTGGCAACGAGAGTGATGGAGACACAGAGGAATTGGCTACT +CTTATGGAGAGGGGGGCTGATAATGTTTTGGATAATGATAATTTGTAATGCTCAACCATT +GTGGGTCACGATCTACTATGGGGTACCTGTGTGGAGAGAAGCAGAGACCACCCTATTTTG +TGCCTCAGATGCTAAGGCATATGTGAAAGAATCACATAATGTCTGGGCTACACATGCCTG +TGTACCCACAGATCCTAACCCACAAGAAATATATTTGAAAAATGTAACAGAAAATTTTAA +TATGTGGAAAAATAACATGGTAGATCAGATGCATGAAGATATAATTAGTCTATGGGACGA +AAGCCTAAAGCCATGTGTAAAATTAACCCCTCTCTGTGTTACTTTAGAGTGTAATAATTT +CAATAGTAGTAATAACAGCACCTCTGCCAACAACAGCATATCTGATGGCATGCAAGAAAT +AAAAAACTGCTCGTTCAATATGACCACAGTACTAAGAGATAAGAGACAGAAAATAGCTGC +GCTTTTTTATAGACAAGATATAGTACCAATGGATGGGAATAGCAGTAGTAGTCAGTATAG +GTTAATAAATTGTAATACCTCAGCAATTACACAGGCTTGTCCAAAGGTATCCTTTGAGCC +AATTCCCATACATTATTGTGCACCAGCTGGTTTTGCGATTCTAAAGTGTAATGATGAGAA +GTTCAATGGAACAGGGCCATGCACGAATGTCAGCACAGTACAATGCACACATGGAATCAA +GCCAGTAGCATCAACTCAGCTGCTGTTAAATGGCAGTCTAGCAGAAAAAGATGTAGTGAT +CAGATCTGAAAATATCTCAAACAATGCCAAAACCATAATAGTACAGTTAAAGAGTCCTGT +AAAAATTAATTGTACCAGACCTAACAACAATACAAGAAAAGGTGTACATATAGGACCAGG +GCAAACATTCTATGCAACAGGTGACATAATAGGAAATATAAGACAAGCACATTGTAATGT +CAGTGGAGGGGACTGGAATACTGCTTTACAACAAGTGGTTGAACAATTAGGGAAGTACTT +CAACAAATCCACAATAGTCTTTAAGAACCACTCAGGAGGGGATTTAGAAATTACAACACA +TAGTTTTAATTGTGGAGGAGAATTTTTCTATTGCAATACAACACCACTGTTTAAGAGCGT +TTGGAATAAAAATGGGAGCACTTGGAACAGCAATACCACTAACAGTACAGAGTCAAATAA +CACTATAACCCTCCAGTGCAAAATAAAGCAAATTATAAATCTGTGGCAGAGAGTAGGACA +AGCAATATATGCCCCCCCCATCCCAGGAGTAATAAGGTGTGAATCAAATATTACAGGACT +ACTATTAACAAGAGATGGGGGAAATATTGATGATGATGCAAATGAGACTTTCAGGCCGGG +AGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAGTAAAAAT +TGAACCACTAGGTGTAGCACCCACCCGTGCAAGAAGAAGAGTGGTGGGGAGAGAAAAAAG +AGCAGTTGGACTAGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGG +CGCAGCGTCAGTAACGCTGACGGTACAAGCCAGACAATTATTGTCTGGTATAGTGCAACA +GCAAAGCAATTTGCTGAGGGCGATAGAGGCTCAACAACAGTTGTTGAAACTCACGGTCTG +GGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAGGGACCAACA +GCTCCTAGGAATTTGGGGATGCTCTGGAAGACTCATCTGCACCACCAATGTACCTTGGAA +CTATAGTTGGAGTAATAAATCTTATAATGACATATGGGATAACATGACCTGGCTACAATG +GGATAAAGAAATTAGCAATTACACAGCAATAATATATAATCTAATTGAAGAATCGCAGAA +TCAGCAGGAAAAGAATGAACAAGACTTATTGGCATTGGACAAGTGGGCAAGTCTGTGGAA +TTGGTTTGACATAACAAAATGGCTATGGTATATAAGAATATTTATAATGATAGTAGGAGG +TTTAATAGGACTAAGAATAGTTTTTGCTGTACTTGCTTTAATAAATAGAGTTAGGCAGGG +ATACTCACCCTTGTCGTTCCAGACCCTTGCCCGCCACCAGAGGGAACCCGACAGGCCCGA +AGGAATCGAAGAAGGAGGTGGAGAGCAAGACAGAAACAGATCCGTGCGATTAGTGAGCGG +ATTCTTAGCACTTGCCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGATT +GAGAGACTTTCTCTTGATTGCAGCAAGGACTGTGGAACTTCTGGGACACAGCTGTCTCAA +GGGGCTGGGACTGGGGTGGGAAGCCCTCAAATATCTGTGGAATCTTCTATCATACTGGAG +TCAGGAACTAAAGAATAGTGCAGTTAGTTTGCTTAATGCAATAGCAATAGCAGTAGCTAA +CTGGACAGACAGAATTATAGAAATAGGACAAAGAGCTGGTAGATAACATGGGTGGCAAGT +GGTCAAAAAGCAGCATAGTGGAATGGCCTAAGGTTAGGGAAAGAATAAGACAGACCCCTC +CAACAGCAACAGGAGTAGGAGCAGCATCTCAAGATTTAGATAAACATGGAGCAATCACAA +GCAGCAACACAGCAGAAACTAACCCTGATTGTGCCTGGCTAGAAGCACAAGAGGACGAGG +AGGTAGGCTTTCCAGTTAAGCCACAGGTACCTTTGAGACCAATGACTTATAAGGCAGCCT +TCGATCTCAGCTTCTTTTTAAAAGAAAAGGGGGGACTGGAAGGGTTAATATACTCCAAGA +AAAGACAAGAGATCCTTGATCTATGGGTCTATAACACACAAGGATTCTTCCCAGATTGGC +AGAACTACACCCCAGGGCCAGGGACTAGATTCCCACTGACCTTTGGGTGGTGCTTCAAAC +TAGTACCAATGGATCCAGCAGATATAGAGGAAGCCAATAAAGGAGAGAACAACAGTTTAT +TACACCCCATCTGCCAGCATGGAATGGAGGACGAAGAAAGAGAAGTGCTGGTCTGGAGAT +TTGACAGCAGCCTAGCACGGAGACACATAGCCCGAGAACTGCACCCAGAGTACTACAAGG +ACTGCTGACACAGGAGTTGCTGACACAGAAGTTGCTGACACAGTTGTTGCTGACAAGGGA +CTTTTCCGCCTGGGACTTTCCGGGGAGGCGCGGCATGGGAGGGACTGGGGAGTGGCTTGC +CCTCAGAAGCTGCATATAAGCAGCCGCTTCTCGCCTGTACTGGGTCTCTCTTGTTAGACC +AGATTTGAGCCTGGGAGCTCTCTGGCTAGCAAGGGAACCCACTGCTT +>CRF02_AG.ES.1999.0.R74_s_nt0545_9481.MF157740 MF157740 +TGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGAC +CACTCTAGACTGTGTAAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCGGAAGTTAATA +GGGACTCGAAAGCGAAAGTTCCAGAGAAGCTCTCTCGACGCACGGACTCGGCTTGCTGAG +GTGCACACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTACGCCAAATTTTGACTAGCGGA +GGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCGGTATTAAGTGGGGGAAAATTAGATGC +ATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAGT +ATGGGCAAGCAGGGAGCTGGAAAGATTTGCACTAAACCCTGGCCTTTTAGAATCAGCAGA +AGGATGTCAACAACTAATGGAACAGTTACAGTCAGCTCTCGGGACAGGATCAGAAGAACT +TAAATCATTATTTAATACACTAGCAGTCCTTTGGTGTGTACATCAAAGGGTAGACATAAA +AGACACCAAGGAAGCCTTAGATAAGATAAAGGAAGTACAGAATAAGAGCAAGCAAAAGCC +ACAGCAGGCAGCAGCTGCCGCAGGAAGCAGCAGCCAAAATTACCCTATAGTGCAAAATGC +ACAAGGGCAAATGGTACATCAGTCCATGTCGCCTAGGACTTTAAATGCATGGGTAAAGGT +AATAGAAGAAAAGGGTTTCAGTCCAGAAGTAATACCCATGTTTTCAGCATTATCGGAGGG +AGCCGCCCCGCAAGATTTAAATATGATGCTAAACATAGTGGGGGGACACCAGGCAGCAAT +GCAGATGTTAAAAGATACCATCAATGAGGAAGCTGCAGAATGGGACAGGGTACATCCAGT +ACATGCAGGGCCTGCCCCACCAGGCCAGATGAGGGAACCAAGGGGAAGTGACATAGCAGG +AACTACTAGTACCCTTCAAGAACAAATAGGATGGATGACAAGCAATCCACCTATCCCAGT +GGGAGAAATCTATAAAAGATGGATAGTCCTGGGATTAAATAAAATAGTAAGAATGTATAG +CCCTGTCAGCATCTTGGACATAAGACAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGA +TAGGTTCTTTAAAACTTTAAGAGCTGAACAAGCTACACAGGAGGTAAAAGGCTGGATGAC +AGAAACCTTGCTGGTCCAAAATGCGAATCCAGACTGTAAGACCATTTTAAGAGCATTAGG +ACCAGGGGCTTCATTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGAGGACCTGGCCA +TAAAGCAAGGGTTTTGGCTGAGGCAATGAGTCAAGCACAACAGGCCAACATAATGATGCA +GAGAGGTAATTTTAGGGGCCAGAGAACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACA +CCTAGCCAGAAATTGCAAGGCCCCTAGGAAAAGGGGCTGTTGGAAATGTGGGAAGGAAGG +ACACCAAATGAAAGACTGTACTGAAAGACAGGCTAATTTTTTAGGGAAAATCTGGCCTTC +CAGCAAGGGGAGGCCAGGAAATTTTCCCCAGAGCAGACCGGAACCAACAGCCCCACCAGC +AGAGAGCGTTGGGATGGGGGAAGAGATAACCTCCTCTCCGCAGCAGGAACCGAGGGACAA +GGGGCTATATCCTCCTTTAACTTCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCACA +GTAAGAATAGAGGGACAACTAATAGAAGCCCTATTAGACACAGGAGCAAATGATACAGTA +TTAGAAGACATAAATTTACCAGGAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGT +TTTATTAAAGTAAGACAATATGATCAGGTACTTATAGAAATTTGTGGAAAAAAGGCCATA +GGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGACGAAATATGTTGACTCAG +ATTGGTTGTACTTTAAATTTTCCAATTAGTCCTATTGAAACTGTGCCAGTAAAATTAAAG +CCAGGAATGGATGGCCCAAAGGTTAAACAATGGCCATTGACAGAAAAAAAAATAAAAGCA +TTAACAGAAATTTGTGCAAAAATGGAAAAGGAAGGAAAAATTTCAAAAATTGGACCTGAA +AATCCATACAATACTCCAGTGTTTGCCATAAAGAAAAAAGATAGTACTAAATGGAGAAAA +TTAGTAGATTTCAGAGAACTCAATAAGAGAACTCAAGACTTCTGGGAGGTCCAATTAGGA +ATTCCTCATCCCGCGGGATTAAAGAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGAT +GCATATTTTTCAGTTCCTTTAGATAAAGACTTTAGGAAGTATACTGCATTCACTATACCT +AGTGTAAATAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGG +AAAGGATCACCAGCAATATTTCAGGCAAGCATGACAAAAATCTTAGAGCCCTATAGGACA +AAAAATCCAGAGATGGTGATCTACCAATATATGGATGATTTATATGTAGGATCTGACTTA +AAAATAGGGCAGCATAGAGCAAAAATAGAGGAGTTAAGAGAACATCTATTGAGATGGGGG +CTTACCACACCAGACAAAAAACATCAGAAAGAACCCCCATTTCTTTGGATGGGATATGAA +CTCCATCCTGACAAATGGACAGTCCAGACTATACAGCTGCCAGACAAAGACAGCTGGACT +GTCAATGATATACAGAAATTAGTGGGAAAACTAAATTGGGCAAGTCAGATTTATCCAGGA +ATTAAAGTAAAGCAACTGTGTAAACTCCTCAGGGGAGCCAAAGCGCTAACAGATATAGTA +ACACTAACTGAGGAAGCAGAATTAGAATTGGCAGAGAACAGAGAAATTTTAAAAGAACCT +GTACATGGAGTATATTATGACCCAACAAAGGACTTAGTAGCAGAAATACAGAAGCAGGGG +CAAGACCAATGGACATATCAAATATATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAA +TATGCAAAAAAGAGGTCTGCCCACACTAATGATGTAAAACAATTAACAGAGGTAGTGCAA +AAAGTGACTACAGAAAGCATAATAATATGGGGAAAGACCCCTAAATTTAGACTACCCATA +CAAAAAGAAACATGGGAAGCATGGTGGATGGAGTATTGGCAAGCCACCTGGATTCCTGAA +TGGGAGTTTGTCAATACCCCTCCTCTAGTAAAATTATGGTACCAGTTAGAGAAAGACCCC +ATAATAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGGAAACTAAGCTAGGA +AAAGCAGGATATGTCACTGACAGAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACA +AATCAAAAGACTGAATTACATGCAATTCATTTAGCCTTGCAGGATTCGGGATCAGAAGTA +AATATAGTAACAGACTCACAATATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGT +GAATCAGAGTTAGTCAATCAAATAATAGAGAAGCTAATACAGAAGGACAAAATATACCTG +TCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGT +AATGGAATCAGGAAGGTACTATTTTTAGATGGCATAGATAAAGCTCAAGAGGAGCATGAA +AGATATCACAGCAATTGGAGAGCAATGGCTAGTGATTTTAATCTGCCACCTATAGTAGCA +AAAGAAATAGTGGCCAGCTGTGACAAATGCCAGCTAAAAGGGGAAGCCATGCATGGACAA +GTAGACTGTGGTCCAGGAATATGGCAATTAGATTGTACACATTTAGAGGGGAAAATTATC +TTAGTAGCAGTCCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATCCCAGCAGAAACA +GGACAGGAGACAGCATACTTTATATTAAAATTAGCAGGAAGATGGCCAGTAAAAATAATA +CACACAGACAATGGCAGCAATTTCACCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCA +AATGTCACACAAGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCT +ATGAATAAAGAATTAAAGAAAATTATAGGGCAGGTCAGGGATCAAGCTGAACACCTTAAG +ACAGCAGTACAGATGGCAGTATTCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGG +TACAGTGCAGGGGAGAGAATAATAGATATAATAGCATCAGATATACAAACTAAAGAACTA +CAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGACCCC +ATTTGGAAAGGACCAGCAAAACTACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGAT +AATAGTGAAATAAAGGTAGTACCAAGAAGAAAAGCAAAAATCATTAGGGATTATGGAAAA +CAGATGGCAGGTGATGATTGTGTGGCAGGTAGACAGGATGAGGATTAGAACATGGAACAG +TTTAGTAAAACATCATATGTATATCTCTAAGAAAGCTAGGAATTGGGTTTATAGACATCA +CTATGAAAGTAGGAATCCAAGAGTAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAA +ATTAGTAGTAAGAACATATTGGGGTCTGCATACAGGAAAAAGAGACTGGCACTTGGGTCA +TGGGGTCTCCATAGAATGGAAGCAGAAAAGATATAGTACACAAATAGATCCTGACCTAGC +AAACCAACTGATTCACCTACATTATTTTGACTGTTTTTCAAAATCCGCCATAAGGAAAGC +CATAATAGGAGAAATAGTTAGACCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGG +ATCACTACAATATTTGGCACTGAAAGCAATAGTAACACCAACAAAGACAAAGCCACCTTT +ACCTAGTGTTAGGAAGTTAGCAGAAGACAGATGGAAAGAGCCCCAGAAGACCAGGGGCCA +CAGAGGGAGCCGTTCAATGAATGGATGCTAGAACTGTTAGAAGAGCTTAAACATGAAGCT +GTTAGGCACTTTCCTAGGCCGTGGCTCCATGGGCTAGGACAACATATCTATGAAACATAT +GGGGATACTTGGGAAGGGGTTCAAGCTATAATAAGAATTTTGCAACAACTACTGTTTGTT +CATTTCAGAATTGGGTGTCAACATAGCAGGATAGGCATTATTCGAGGGAGAAGAGGCAGG +AATGGAGCTGGTAGATCCTAGCCTAGAGCCCTGGAACCACCCGGGAAGCCAGCCTACAAC +TGCTTGTAGCAAATGTTATTGTAAAATGTGCTGCTGGCATTGCCAATTGTGCTTTTTGAA +CAAGGGCTTAGGCATCTCCTATGGCAGGAAGAAGTGGAGACGCCGACGAGGAGCTTCTCA +GAGCCATCAGGTTCATCAAGATCCTGTACCAAAGCAGTAAGTAATAACAATTAGTATATG +TGATGCTACCTTTACATATAGCTGCAATAGTAGGACTAGTAGTAGCATTCATAGCAGCCA +TAGTTGTGTGGACCATAGTATATATAGAATATAGGGAAATAAGGAAACAGAAGAAAATAG +ACAGGTTACTTGAGAGAATAAGAGAAAGAGCAGAAGATAGTGGCAATGAGAGTGACGGGG +ATACAGAAGAATTATCCACTCTTTTGGAGATGGGGTATGATRATATTTTGGACAATGATA +ATTTGTAATGGTGAGCAGATGTGGGTCACGGTCTATTATGGGGTACCTGTGTGGAAAGAC +GCAAAGACCACCCTATTTTGTGCATCAAATGCGCAAGCATATAACCCAGAAGTACATAAT +GTCTGGGCTACACATGCCTGTGTACCCACAGACCCTAACCCACAGAAAATACCTTTGGAA +AATGTAACAGAAAAATTTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAAGAT +ATAATTAGTCTATGGGACCAAAGCCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGCGTT +ACTTTAAATTGTCGTAACCTCGACAACAAAACTAGCAACGCCAATAGTAGCAACAGCAAC +GATTTCAACAGAACCATATCTATTGACATGAAAGAGGAAATACAAAACTGCTCTTTCAAT +ATGACCACAGAATTAAGAGATAAGGAAAAGAAAATGTATGCACTTTTTTATAGACTTGAT +ATAGTACAAATTGAAAATAGCAGTAGTCTTGAAAATGGCAGTAGTCCGTATAGGTTAATA +AATTGTAATACCTCAGCCATTACACAGGCTTGTCCAAAGATAACCTTTGAGCCAATTCCC +ATACATTATTGTGCCCCAGCTGGTTTTGCAATTTTAAAGTGTAATGATAAGAAGTTCAAT +GGAACAGGGCCCTGCATGAATGTCAGCACAGTACAATGCACACATGGAATCAAGCCAGTA +GTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAAAGGTAGCAATTAGATCT +GAAAATATCACAAACAATGCCAAAACCATAATAGTACAGTTGATTACGCCTGTAAAAATT +AACTGTACCAGACCTGGCAACAATACAAGAAGAAGGGTGCGTATAGGACCAGGGCAAGCA +TTCCATGCATCAGATGATATAATAGGAGATATAAGAAAAGCACATTGTAATGTCAGTGAA +AAAGATTGGAATAACACTTTACACCAGGTAGCTAATCAATTAGGGGAGCACTTTAAGAAT +GCAAAAACAATAAAATTTGCTAGCTCCTCAGGAGGGGACGTAGAAATTACAACACATAGT +TTTAATTGTGGAGGAGAATTTTTCTATTGCAGTACATCAGAACTGTTTAATAGCACTTGG +AAACGGGTTAATAACACTACTACTTGGAATAGCACTGCCAACTCAACAAATGACCCTATA +ACTCTCCGGTGTAGAATAAAGCAAATTGTAAGGATGTGGCAGAGAGTAGAACAAGCAATG +TATGCCCCTCCCATCCGAGGAGAAATAAGGTGTGAGTCAAACATTACAGGATTACTATTA +ACAAGAGATGGAGGGCATGATGATGGGACAGATGAGACAGAGGAGACCTTCAGGCCTGGA +GGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAGTATAAAGTAGTAAAAATT +GAACCACTAGGTGTAGCACCCACCCATGCAAAAAGAAGAGTGGTGGAGAGAGAAAAAAGA +GCAGTTGGACTGGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGC +GCGGCGTCAATAACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAG +CAGAGCAATTTGCTGAGAGCTATAGAGGCTCAACAACATCTGTTGAGACTCACGGTCTGG +GGCATTAAACAGCTCCGGGCAAGAGTCCTGGCTCTGGAAAGATACCTAAGTGATCAACAG +CTCCTAGGACTTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCCTGGAAC +TCTAGTTGGAGTAACAAAACTTATAATGACATATGGAATAACATGACCTGGCTGCAATGG +GATAGAGAAATTGACAATTACACAAACATAATATATAATCTAATTGAGGAATCGCAAAAC +CAGCAGGAAAAGAATGAACAAGACTTGTTGGCATTGGACACGTGGGCAAGCCTGTGGAAT +TGGTTTAAAATAACAAACTGGCTATGGTATATAAAAATGTTTATAATGATAGTAGGAGGT +TTAATAGGTTTAAGAATAGTTTTTGCTGTACTTACCATAATAAATAGAGTTAGGCAGGGA +TACTCACCTTTGTCGTTCCAGACCCTTACCCACCACCAGCGGGGACCCGACAGGCCCGAA +AGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAGACAGATCAGTGCGCTTAGTGAGCGGA +TTCTTAGCACTTGCCTGGGACGATCTGCGGAACCTGTGCCTCTTCAGCTACCACCGATTG +AGAGACTTAGTCTTGATTCTGGGACACAGCAGTCTCAAGGGACTGAGACTGGGGTGGGGA +GCCCTCAAATATCTGTGGAATCTTCTATCATACTGGGGTCAGGAACTAAAGAATAGTGCT +ATTAGTTTGCTTGATACAATAGCAATAGCAGTAGCTAACTGGACAGACAGGATTATAGAA +ATAGGACAGAGAGTTGGTAGAGCTATTTGCAACATACCTAGAAGAATCAGACAGGGCTTA +GAAAGGGCTTTGCTATAACATGGGTGGCAAGTGGTCAAAAAGCAGCATAGTGGGATGGCC +TCAGGTTAGGGAAAGGATAAGACAAACCCCTCCAGCGCCAGCAGCAGAAGGAGTAGGAGC +GGCATCTCAAGACTTAGATAAATATGGAGCAATTACAAACAGTAATACAACACAGAATAA +TCCTGATTGTGCCTGGCTGGAAGCACAAGAAGACGAGGAGGTAGGCTTCCCAGTCAGACC +ACAGGTACCTTTGAGACCAATGACTACCAGGGCAGCTCGAGATCTCAGCCACTTTTTAAA +AGAAAAGGGGGGACTGGATGGGTTAATTCACTCCAAGAAAAGACAAGAGATCCTTGATCT +GTGGGTCTATCACACACAAGGATTCTTCCCAGATTGGCAGAACTACACTCCAGGGCCAGG +GACTAGATACCCACTTTGCTTCGGGTGGTGCTTCAAACTAGTACCAATGGATCCAGCAGA +GGTAGAGAAAGCCAATGAAGAAGAGAACAACAGTTTATTACACCCCATCTGTCAGCATGG +AATGGAAGACGAAGACAGAGAAGTACTGGTCTGGAGGTTTGACTGTAACCTGGCATTTAG +ACACGTAGCTAAAGAGCTGCATCCGGAGTACTACAAAGACTGCTGACACAGAAGTTGCTG +ACAGGGACTTTCCACTGGGGACTTTCCGGGGAGGCGTGGTGTGGGAGGAG +>CRF02_AG.CM.2001.0.01CM_0131NY.AY371137 AY371137 +GCGAGAGCGTCAGTATTAAGTGGGGGAAAATTAGATGCATGGGAAAAAATTCGGCTAAGG +CCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAA +AGATTCGCACTTAATCCTGGTCTTTTAGAAACAGCAGAAGGATGTCAACAAATAATGGAG +CAGTTACAATCAACTCTCAGGACAGGATCAGAAGAACTTAAATCATTATATAATACAGTA +GCAGTCCTGTATTGTGTACATCAAAGGTTAGATATAAAAGACACCAAGGAAGCCTTAGAT +AAAATAGAGGAAATGCAAAATAAGAGCAAACAAAAGGCACAGCAGGCAGCAGCTGGCACA +GGCTGCAGCCAAAATTACCCTATAGTGCAGAATGCACAAGGGCAAATGACACATCAGAAT +ATGTCACCTAGGACTTTAAATGCATGGGTGAAGGTAATAGAAGAAAAGGCTTTCAGCCCA +GAAGTAATACCCATGTTTTCAGCCTTATCAGAGGGAGCCACCCCACAAGATTTAAATATG +ATGCTAAACATAGTGGGGGGGCACCAGGCAGCAATGCAAATATTAAAAGATACCATCAAT +GAGGAAGCTGCAGACTGGGACAGGACACATCCAGTACCTGCAGGGCCTATTGCACCAGGC +CAGATAAGAGACCCAAGGGGAAGTGATATAGCAGGAACTACTAGTAACCTTGAAGAACAA +GTAAGATGGATGACAAGCAATCCACCTATCCCAGTGGGAGACATCTATAAAAGATGGATA +ATCCTGGGACTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGA +CAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGATAGATTCTTTAAAACTTTGAGAGCT +GAACAAGCTACGCAGGAGGTAAAACACTGGATGACAGAAACCTTGCTGGTCCAAAATGCG +AATCCAGACTGTAAGTCTATTTTGAAGGCATTAGGAACAGGGGCTACATTAGAAGAAATG +ATGACAGCATGCCAGGGAGTGGGAGGACCTGGCCATAAAGCAAGGGTTCTGGCTGAGGCA +ATGAGTCAAGTACAACAGACAAACATAATGATGCAGAGAGGCAATTTTAGGGGACAGAAA +ACAATAAAGTGTTTCAATTGTGGTAAAGAAGGGCACCTAGCCAGAAATTGCAAGGCCCCT +AGAAAAAAGGGCTGTTGGAAATGTGGGAAGGAAGGACACCAAATAAAAGACTGCACTGAG +AGACAGGCGAATTTTTTAGGGAGAATTTGGCCTTCCAAGGGGAGGCCAGGAAATTTTCCT +CAGAGCAGACCGGAACCAACAGCCCCACCAGCAGAGATCTTTGGGATGGGGGAAGAGACA +CCCTCCTCTCCGAAGCAGGAACCGAAGGACGAGGGAATATACCCTCCCTTAACTTCCCTC +AAATCACTCTTTGGCAACGACCCTTAGTTACAGTAAAAATAGGGGGACAGCTAATAGAAG +CCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAGTTTACCAGGAAAAT +GGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGATCAGA +TACTCATGGAAATTTATGGGAAAAAGGCTATAGGTACAGTGCTAGTAGGACCTACACCTG +TCAACATAATTGGACGAAATATGTTGACTCAGATTGGCTGTACTTTAAATTTTCCAATTA +GCCCTATTGAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAGGTTAAAC +AATGGCCATTGACAGAAGAAAAAATAAAAGCATTAACAGAAATTTGTGCAGAAATGGAAA +AGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCA +TAAAGAAAAAAGATAGTACTAAATGGAGGAAATTAGTAGATTTCAGAGAACTCAATAAAA +GAACTCAAGACTTCTGGGAGGTCCAACTAGGGATACCTCATCCCGCGGGATTAAAAAAGA +AAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCCTTAGATGAGG +GCTTTAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACCGGGAATTA +GATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAAGCTA +GCATAACAAAAATCTTAGAGCCCTTTAGAATGAAAAATCCAGAGATAATAATTTACCAAT +ATATGGATGATTTATATGTAGGATCTGACTTAGAGATAGGGCAGCATAGAGCAAAAGTAG +AGGAGTTAAGAGAACATCTACTGAAATGGGGATTTACCACACCAGACAAAAAACATCAGA +AAGAGCCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAGTCCAGC +CTATACAGCTGCCAGACAAAGACAGCTGGACTGTCAATGATATACAGAAGTTAGTGGGAA +AACTAAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAAACAACTGTGTAAACTCC +TCAGGGGAGCCAGAGCACTAACAGATATAGTAACACTGACTGAGGAAGCAGAATTAGAAT +TGGCAGAAAACAGGGAAATTCTAAAAGAACCTGTACATGGAGTCTATTATGACCCAGCAA +AAGACCTAATAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTTATC +AAGAGCCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGCTCACACTA +ATGATGTAAAACAATTAACAGAGGTAGTGCAAAAGGTGGCTACAGAAAGCATAGTAATAT +GGGGAAAGACCCCTAAATTTAGACTACCCATACAAAAAGAAACATGGGAAGCCTGGTGGC +TGGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTCTAG +TAAAATTATGGTACCAATTAGAGAAAGAACCAATATTAGGGGCAGAAACTTTCTATGTAG +ATGGGGCAGCTAATAGGGAGACTAAGCTAGGGAAAGCAGGGTATGTCACTGACAGAGGAA +GACAAAAGGTTGTTTCCCTAAATGAGACAACAAATCAAAAGACTGAATTACATGCAATCC +ATCTAGCCTTGCAGGATTCAGGAACAGAAGTAAATATAGTAACAGACTCACAGTATGCAT +TAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGAGTTAGTTAATCAAATAATAG +AGAAGCTAATAGAAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGAATTG +GAGGAAATGAACAAGTAGATAAATTAGTCAGTAATGGAATCAGGAGAGTACTGTTTTTAG +ATGGCATAGATAAAGCTCAAGAAGAGCATGAAAAATATCACAGTAATTGGAGAGCAATGG +CTAGTGATTTTAATCTGCCACCTATAGTAGCAAAAGAAATAGTGGCCAGCTGTGATAAAT +GCCAGCTAAAAGGGGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAAT +TAGATTGTACACATTTAGAAGGAAAAATTATCATAGTAGCAGTCCATGTAGCCAGTGGCT +ATATAGAGGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATACTTTATATTAA +AATTAGCAGGAAGATGGCCAGTGAAAATAATACACACAGACAACGGCAGCAATTTCACCA +GTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAAATGTCACACAAGAATTTGGAATTCCCT +ACAATCCCCAAAGCCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAAATTATAG +GGCAGGTCAGGGATCAAGCTGAACACCTTAAGACAGCAGTACAGATGGCAGTGTTCATTC +ACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAGACA +TAATAGCATCAGATATACAAACTAAAGAACTACAAAAACAAATTATAAAAATTCAAAATT +TTCGGGTTTATTACAGGGACAGCAGAGACCCAATTTGGAAAGGACCAGCAAAGCTACTCT +GGAAAGGTGAAGGGGCAGTAGTAATACAGGATAATAGTGATATAAAGGTAGTACCAAGAA +GAAAAGTAAAAATCATTAAAGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAA +GTAGACAGGATGAGAATTAGAACATGGAACAGTTTAGTAAAGCATCATATGTATGTTTCT +AAGAAAGCTAGAAATTGGTTTTATAGACACCACTATGAAAGCCGACATCCAAAAGTAAGT +TCAGAAGTACACATTCCACTAGGGGATGCTATATTGGTAATAAAAACATATTGGGGACTG +CATACAGGGGAAAGAGAGTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAGAGA +AGATACAGCACACAAGTAGATCCTGACCTAGCAGACCAACTGATTCACCTGCATTATTTT +GACTGTTTTTCAGAATCTGCCATAAGAAAAGCCATATTAGGACAAGTAGTTAGACCTAGG +TGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTACAATATTTGGCACTGAAAGCA +TTAGTAACACCAACAAGGACAAGACCACCTTTGCCTAGTGTTAAGAAATTAACAGAAGAC +AGATGGAACAAGCCCCAGAGGACCAGGGGCCGCAGAGGGAGCCGTCCAATGAATGGACAT +TAGAACTGTTAGAAGAGCTTAAACATGAAGCAGTTAGACATTTTCCTAGGCCATGGCTCC +ATGGATTAGGACAACATATCTATGAAACATATGGGGATACTTGGGAAGGGGTTGGAGCTA +TAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGCCAACATAGCA +GAATAGGCATTATTCCAGGGAGAGGAGGCAGAAATGGAGCTAATAGATCCTAGCCTAGAG +CCCTGGAACCACCCGGGAAGTCAGCCTACAACTGCTTGTAACAATTGTTACTGTAAAATA +TGCTGCTGGCATTGCCAATTATGCTTTCTGAACAAGGGCTTAGGCATTTCCTATGGCAGG +AAGAAGCGGAGACGCCGACGAGGAACTTCTCACAGCCGTCAGGATCATCAAAATCCTGTA +CCAAAGCAGTAAGTAGTAATAATTAGTATATGTGATGCAATCCTTAGAAATAGCTACAAT +AGTAGGACTAGTAGTAGCATTCATAGCAGCCATAGTTGTGTGGACCATAGTGTTCATAGA +ATATAAGAAAATAAGAAAACAGAAGAAAATAGACAGGTTACTTGATAGAATAAGGGACAG +AGCAGAAGATAGTGGCAATGAGAGTGATGGGGATACAGAGGAATTATCCACTCTTATGCA +GCTGGGGGATTATGATTTGTTTGTTAATGATAATGTGTAATGCTAACAAAAACTTATGGG +TCACAGTCTACTATGGGGTACCTGTATGGAAAGAAGCAAACACCACCCTATTTTGTGCAT +CAGATGCTAAAGCATATAACAGAGAAGCACATAATGTCTGGGCTACACATGCTTGTGTAC +CCACAGATCCCAACCCACAAGAAATACCTTTGGAAAATGTAACAGAAAAGTTTAATATGT +GGAAAAATAACATGGTAGAGCAGATGCATACAGATATAATTAGTCTATGGGACCAAAGTC +TAAAGCCATGTGTACAGCTAACCCCTCTCTGCGTGACTCTACATTGTTCTGACAACGTCA +CTAACATCACTAACGTGTCTGAGAACATGAAAGGGGAAATAAAAAACTGCTCTTTCAATA +TGACCACAGAATTAAGAGATAAGCAAAGGAAAATGTATTCACTTTTTTATAGACTTGATG +TAGTACCAATTAATGGAGATAATGATAGTAGTCAGTATAGACTAATAAACTGTAATACCT +CAGCCATTACACAGGCTTGTCCAAAAGTATCCTTTGAGCCAATTCCCATACATTTTTGTG +CCCCAGCTGGTTTTGCGATTCTGAAGTGTAAGGATAAGAAGTTCAAGGGAACAGGGTCAT +GCCAGAATGTCAGCACAGTACAATGCACACATGGAATCAAACCAGTAGTATCAACTCAAC +TGTTACTAAATGGCAGTCTAGCAGAAGGAGAGGTAGTGATTAGATCTGAAAATATCACAA +ACAATGCCAAAATCATAATAGTACAGTTGGCTAGTCCTGTAAAAATTAATTGTACCAGAC +CTAGCAACAATACAAGAAAAAGTATACATATAGGACCAGGACGAGCATTCTATGCAACAC +ATGACATAACAGGGAATATAAGACAAGCACATTGTAATGTCAGTGAAGCAAAATGGAAGG +AAGCTTTACAACAGGTAGCTACACAATTAAGAAAGTTCTTTAAGAATAACACATCAATAA +AATTTGCTAAATCCTCAGGAGGGGATGTAGAAATTACAACACATAGTTTTAATTGTGGAG +GAGAATTTTTCTATTGCAATACATCACAACTGTTTAATAGTACTTGGAATAGTACTTATA +GCAATAATGCCAACTTAACAAATGGCACTATAACTCTCCAATGCAGAATAAAGCAAATTG +TACAGATGTGGCAGAGAGTAGGACAAGCAATGTATGCCCCTCCCATCCAAGGAGTAATAA +GGTGTGAGTCAAACATAACAGGATTACTATTAACAAGAGATGGAGGGACAAATAATACAA +ATAATACCGAGACATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAAT +TATATAAGTATAAGGTAGTACAAATTGAACCAGTGGGTGTGGCACCCACCCATGCAAAAA +GAAGAGTGGTGGAGAGAGAAAAAAGAGCAGTTGGACTGGGAGTTGCGTTCCTTGGGTTCT +TAGGAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGTACAGGCCAGAC +AATTATTGTCTGGTATAGTGCAACAGCAGAGCAATTTGCTGAAGGCTATAGAGGCTCAAC +AACATATGTTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTC +TGGAAAGATACCTAAGGGATCAACAGCTCCTAGGAATTTGGGGCTGCTCTGGAAAACTCA +TCTGCACCACTACGGTGCCCTGGAACTCTAGTTGGAGTAATAAAACTTATGAGGAAATAT +GGGACAACATGACCTGGATGCAATGGGATAGAGAAATTAATAATTACACAGGGATAATAT +ATAATCTAATTGAACAATCACAGAACCAGCAGGAAAAGAATGAACAAGATTTATTGGCAT +TGGACAAGTGGGAAGGCCTGTGGAATTGGTTTAACATAACAAAATGGCTATGGTATATAA +AAATATTTATAATGATAGTAGGAGGTTTAATAGGCTTAAGAATAGTTTTTGCTGTGCTTA +ATGTAATAAATAGAGTTAGGCAGGGATACTCACCTTTGTCATTCCAGACCCTTACCCACC +ACCAGAGGGAACCCGACAGGCCCGAAAGAATCGAAGAAGGAGGTGGCGAGCAAGACAGAG +ACAGATCCGTGAGATTAGTCAGCGGGTTCTTAGCACTTGCCTGGGACGACCTGCGGAACC +TGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTAGCCTTGATTGCTGCGAGGGGTGTGG +AACTTCTGGGACACAGCAGTCTCAAGGGACTGAGACTGGGGTGGGAAGCCCTCAAATATC +TGGGGAATCTTCTGGCATATTGGGGTCGGGAACTAAAGAATAGTGCTATTAATTTGCTTG +ATACAACAGCAATAGCAGTAGCTAACTGGACAGATAGAGTTATCGAAATAGCACAAAGAG +CTGGTAGAGCTATTATTAACATACCTACAAGAATCAGACAGGGCTTCGAAAGGGCTTTGC +TATAACATGGGTGGCAAGTGGTCAAAAAGTAGCCTAGTGGGATGGCCTCAGATTAGAGAA +CGAATGAGACAAACTCCTCCAACTCCTCCTCCAGCAGCAAAAGGGGTAGGAGCAGTATCT +CAAGATTTAGATAAACATGGAGCAATCACAAGCAGTAATACAGCAGCCACTAATGCTAGT +TGTGCCTGGCTGGAAGCACAAGAGGACGAGGAAGTAGGCTTTCCAGTCAGGCCTCAGGTA +CCGTTGAGACCAATGACTTATAAAGGAGCTGTGGATCTCAGCCACTTTTTAAAAGAAAAG +GGGGGACTGGATGGGTTAGTTTATTCTCAGAGAAGACAAGAGATCCTTGATCTGTGGGTC +TATCACACACAAGGATACTTCCCAGACTGGCAGAACTACACACCAGGACCAG +>CRF02_AG.GH.2003.0.GHNJ188.AB231896 AB231896 +TGGATGGGCTAATTTACGCCAAGAAAAGACAGGAGATCCTTGATCTATGGGTTTATCACA +CACAAGGATTCTTCCCAGATTGGCAGAACTACACACCAGGGCCAGGGGTTAGATACCCAC +TGACCTTCGGGTGGTGCTTCAAACTAGTACCAGTGGATCCAACAGAGGTAGAGGAAGCCA +ATGAAGGAGAGAACAACAGTTTATTACATCCCATCAGTCAGCATGGAATGGAGGACGAAG +ACAGAGAGACGCTGGTCTGGAGATTTGACAGCCACTTGGCCTTGAAACACAGAGCTCTAG +AGATGCATCCGGAGTTTTACAAAGACTGCTGACACAGAAGTTGCTGACACAGGAGTTGCT +GACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGTGTGGTTGGGGAGGAGTTTGGGAG +TGGCTAACCCTCAGATGCTGCATATAAGCAGCTGCTTCTCGCTTGTACTGGGTCTCTCTT +GCTAGACCAGATTTGAGCCTGGGAGCTCTCTGACTAGCAGGGGAACCCACTGCTTAAGCC +TCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGG +TAACTAGAGATCCCTCAGACTACTTTAGTCAGTGTAAAAATCTCTAGCAGTGGCGCCCGA +ACAGGGACCGGAAGTTAATAGGGACTCGAAAGCGAAAGTTCCAGAGAAGATCTCTCGACG +CACGGACTCGGCTTGCTGAGGTGCACACAGCAAGAGGCGAGAGCGGCGACTGGTGAGTAC +GCCAATTTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTG +AGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAGG +TATAGGCTAAAACATCTAGTATGGGCAAGCAGGGAGCTGGAAAGATTCGCACTTAACCCT +GGCCTTTTAGAAACAGCAGAAGGATGTCAGCAAGCAATAGAACAGTTACAACCAGCTCTC +GGGACAGGAACAGAAGAACTCAAATCATTATTTAATACCATAGCAACCCTTTGGTGTGTA +CATAAAAGGATAGAGGTAAAAGACACCAAGGAAGCCTTAGATAAAATTGAGGAAGTACAA +AATAAGAGCAATAAGAGCAAGCAACAGACACAGCAGGCAGCAGCTGCAGCCGCCACAGGA +AGCAGCAGCCAAAATTTCCCTATAGTGCAAAATGCACAAGGGCAAATGACACATCAGTCC +ATGTCACCTAGGACTTTGAATGCATGGGTAAAGGTAATAGAAGAAAAGGCTTTCAGTCCA +GAAGTAATACCCATGTTTTCAGCATTATCAGAGGGAGCCACCCCACAAGATTTAAATATG +ATGCTAAACATAGTGGGGGGACACCAGGCAGCAATGCAGATGTTAAAAGATACCATCAAT +GAGGAAGCTGCAGAATGGGACAGGACACATCCAGTACATGCAGGGCCTATTCCACCAGGC +CAGATGAGGGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAGCAA +GTAGGATGGATGACAAGCAATCCACCTATCCCAGTAGGAGAAATCTATAAAAGATGGATA +GTCCTGGGATTAAATAAGATAGTAAGAATGTATAGCCCTGTCAGCATTTTGGACATAAGA +CAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGATAGGTTCTTTAAAACTTTGAGAGCT +GAACAAGCTACACAGGATGTAAAGAACTGGATGACAGAAACCTTGCTGGTCCAAAATGCG +AATCCAGACTGTAAGTCCATTTTAAGAGCAATGGGACCAGGGGCTACATTAGAAGAAATG +ATGACAGCATGTCAGGGAGTGGGAGGACCTAGCCATAAAGCAAGGGTCTTGGCTGAGGCA +ATGAGTCAAGCACAACAGGCCAACATAATGATGCAGAGAGGCAATTTTAGGGGCCAGAGA +ACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAAGGCACCT +AGGAAAAGAGGCTGTTGGAAATGTGGGAAGGAAGGACACCAAATGAAAGACTGCACTGAG +AGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAACAAGGGGAGGCCAGGAAATTTT +CCTCAAAGCAGGCCGGAACCAACAGCCCCTCCAGCAGAGAGCCTCGGGATGGGGGAAGAG +ATAACCTCCCCTCAGAAGCAGGAACCGAGGGACAAGGGATTATATCCTCCTTTAACTTCC +CTCAAATCACTCTTTGGCAACGACCCCTAGTCACAGTAAGAATAGGGGGACAGCCAATAG +AAGCCCTATTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTACCAGGAA +AATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAATATGATC +AGATACTTATAGAAATTTGTGGAAAAAGGGCCATAGGTACAGTACTAGTAGGACCTACAC +CTGTCAACATAATTGGACGAAATATATTGACTCAGATTGGTTGTACTTTAAATTTTCCAA +TAAGTCCTATTGAAACTGTGCCAGTAAAATTAAAGCCAGGAATGGATGGTCCAAAGGTTA +AACAATGGCCTTTGACAGAAGAGAAAATAAAAGCCTTAACAGACATTTGTAATGAAATGG +AAAAGGAAGGAAAAATTTCAAAAATTGGGCCTGAAAATCCATATAACACTCCAGTATTTG +CCATAAAGAAAAAAGATAGTACCCAATGGAGAAAATTAGTAGATTTCAGGGAACTCAATA +AAAGAACTCAAGATTTCTGGGAGGTCCAATTAGGAATACCTCATCCCGCGGGGTTAAAAA +AGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTCTCAGTTCCCTTAGATA +AAGACTTTAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACCAGGGA +TTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTCAGG +CAAGCATGACAAAAATCTTAGAGCCCTTTAGAACAGAAAATCCAGAGATAGTGATTTACC +AATATATGGATGATTTATATGTAGGTTCTGACTTAGAGATAGGGCAACATAGAGCAAAAA +TAGAGGAGTTGAGAGAACATCTCCTGAGATGGGGGTTTACCACACCAGACAAAAAGCATC +AGAAAGAACCTCCATTTCTTTGGATGGGGTATGAACTCCATCCTGACAAATGGACAGTCC +AGCCTATACAGCTGCCAGAAAAAGACAGCTGGGCTGTCAATGATATACAGAAATTAGTGG +GAAAACTAAATTGGGCAAGTCAGATCTATGCAGGAATTAAAGTAAAACAATTGTGTAGAC +TCCTCAGGGGAGCCAAAGCGCTAACAGATATAGTACCACTGACTGAGGAGGCAGAATTAG +AATTGGCAGAGAACAGGGAAATTCTAAAAGAACCTGTACATGGGGTATACTATGACCCAA +CAAAAGACTTAATAGCAGAGATACAGAAACAAGGGCAAGACCAATGGACATATCAAATTT +ACCAAGAGCCATTTAAAAATTTAAAAACAGGAAAATATGCAAAAAAGAGGTCTGCCCACA +CTAATGATGTAAAACAGTTAACAGAGGTAGTGCAAAAAGCGGCTACAGAAAGCATAATAA +TATGGGGGAAGACCCCTAAATTTAGACTACCCATACCAAGAGAAACATGGGAAGCATGGT +GGATGGAGTATTGGCAGGCTACCTGGATTCCTGAATGGGAGTTTGTCAATACCCCTCCTC +TAGTAAAATTATGGTACCAGTTAGAGAAAGACCCCATAATAGGAGCAGAAACTTTCTATG +TAGATGGGGCAGCTAATAGGGAAACGAAGCTAGGAAAAGCAGGGTATGTCACTGACAGAG +GAAGACAAAAAGTTGTTTCCCTAACTGAGACAACAAACCAAAAGACTGAATTACATGCAA +TTCATCTAGCCTTGCAGGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAGTATG +CATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGAGTTAGTCAATCAAATAA +TAGAGAAGCTAATAGGAAAGGACAAAGTCTACCTGTCATGGGTACCAGCACACAAAGGGA +TTGGAGGAAATGAACAAGTGGATAAATTAGTCAGCAATGGAATCAGGAGAGTCCTATTTT +TAGATGGCATAGATAAAGCCCAAGAAGAGCATGAAAGATATCACAGCCATTGGAGAGCAA +TGGCCAGTGATTTTAATCTGCCACCTGTAGTAGCAAAAGAAATAGTGGCCTGCTGTGATA +AATGTCAGCTAAAAGGAGAAGCCATACATGGACAAGTAGACTGTAGTCCAGGAATATGGC +AATTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTAGCAGTCCATGTAGCCAGTG +GCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAAGAGACAGCATACTTTATAT +TAAAATTAGCAGGAAGATGGCCAGTGAAAGTAATACACACAGACAATGGCAGCAATTTCA +CCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAAGTATCACACAAGAATTTGGAATTC +CCTACAATCCCCAAAGTCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAGATTA +TAGGACAGGTCAGGGATCAAGCTGAACACTTGAAGACAGCAGTACAGATGGCAGTATTCA +TTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAATAG +ACATAATAGCCTCCGATATTCCAACTAAAGAGCTACAAAAACAAATTACAAAAATTCAAA +ATTTTCGGGTTTATTTCAGGGACAGCAGAGACCCCATTTGGAAAGGACCAGCAAAACTAC +TCTGGAAAGGTGAAGGGGCAGTAGTAATTCAAGACAATAGTGAGATAAAAGTAGTACCAA +GAAGAAAAGCAAAAATTATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGG +CAGGTAGACAGGATGAGGATTAGAACATGGAACAGTCTGGTAAAACATCATATGTATATC +TCTAAGAAAGCTAAAGGTTGGTTTTATAGACATCATCATGAAAGTAGGCATCCAAAAATA +TGTTCAGAAGTACACATCCCACTAGGGGATGCTATGTTAATAGTAAGAACATATTGGGGT +CTACATACAGGAGAAAGAGACTGGCACTTGGGTCATGGGGTCTCCATAGAATGGAGACAG +AAAAGATACAGCACACAAATAGATCCTGACCTAGCAGACAACCTGATTCACCTGCATTAT +TTTGACTGTTTTTCAGACTCTGCCATAAGGAGAGCCATATTAGGACAAGTAGTTAGCCCT +AGATGTGAGTTTCAAGCAGGACACAATAAGGTAGGATCTCTGCAATATTTGGCACTGAAA +GCATTAGTAAAGCAGCCAAGGAGAAAGCCACCGTTGGCTAGTGTTAGGAAGTTAACAGAA +AATCGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGCCATTCAATGAATGGG +CACTAGAATTGTTAGAAGAGCTTAAACATGAAGCTGTCAGACATTTTCCTAGGCCGTGGC +TCCATGGATTAGGACAACACATCTATGAAACATATGGGGATACTTGGGAAGGGGTTGAAG +CTATAATAAGAATCTTGCAACAACTACTGTTTGTTCATTTCAGAATTGGGTGTCAACATA +GCAGAATAGGCATTATTCGAGGAAGAAGAGGCAGGAATGGAGCTGGTAGATCCTAGCCTA +GAGCCTTGGAACCACCCGGGAAGTCAGCCTACAACTGCTTGTAGCAAGTGTTACTGTAAA +ATGTGCTGCTGGCATTGCCAATTATGCTTTCTGACCAAGGGCTTAGGCATCTCCTATGGC +AGGAAGAAGCGGAGACGCCGACGAAGAACTCCTGAGAGCTGTCAGGATCATCAAAATCCT +GTATCAAAGCAGTGAGTAATAATAATCAGTATATGTAATGCAGTTTTCAGATCCTTTAAC +AATAGCTTCAATAGTAGGACTAGTAGTAGCAGTTATAGCAGCCATAGTTGTGTGGAGCAT +AGTATTGATAGAATATAGAAAAATAAGAAAACAGAAGAAAATAGACAGGATACTTAATAG +AATAAGAGAAAGAGCAGAAGATAGTGGTAATGAGAGTGATGGGGATACAGAAGAATTATC +CACCCTTCTGGAGATGGGGAATGGTGCTATTTTGGATATTGATAATTTGTAATGCTGAAA +ATTTGTGGGTCACGGTCTACTATGGGGTACCTGTGTGGAAAGAGGCAAATACCACCTTAT +TTTGTGCATCAGATGCTAAAGCATATGATACAGAAGTACATAATGTCTGGGCTACACATG +CCTGTGTACCCACAGACCCTAACCCACGAGAAATACTTATAGAAAATGTAACAGAAGAGT +TTAACATGTGGAAAAATAACATGGTAGAACAGATGCATGAAGATATAATTAGTCTATGGG +ACCAAAGCCTAATGCCATGTGTAAAGTTAACCCCTCTCTGTGTTACTTTAAATTGCTCTA +ACGTTATCAGCGGCACCTATAACAGCACCAATAATAACAGCACCTATAACATCAGCATCA +GTGCTGACATGAAAGGGGAAATAAAAAACTGCTCTTTCAATATGACCACAGAATTAAGAG +ATAAGAAACAGAATGTGTATGCACTTTTTTATAGACTTGATGTAGTACCAATTGATGCAA +AAAGTAGTAGTAATGTAAATAATAGTGATACAGGTAATAGTAGGAATACAAATAGTGGCA +GGGAGTATAGACTAATAAACTGCAATGCTTCAACCATTACACAGGCTTGTCCAAAGGTAT +CCTTTGAACCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATTCTGAAGTGTA +ATGAGAAAACCTTCAATGGAACAGGGCCATGCAGGAATGTCAGCACAGTACAATGCACCC +ATGGAATCAAGCCAGTAGTATCAACACAACTGCTGTTGAATGGTAGTCTAGCAGAAAAAG +AGGTAGTGATTAGATCTGAAAATATCTCAGACAATGCCAAAATCATAATAGTACAGTTGA +ATGAAACTGTACAAATTAATTGTACCAGACCTGGCAACAATACAAGAAAAAGTATACATA +TAGGACCAGGGCAAGCATGGGATGCAACAACAAAAATAATAGGGGATATAAGAAAAGCAT +ATTGTAATGTCAGTAAAGCAAAATGGAATAGAACTTTACAACTGGTGGCTAGTAAATTAA +ATAAATACTTTAATAAGACAGAAATAATTTTTACTAATTCCTCAGGAGGAGATTTGGAAA +TTACAACACATAGTTTTAATTGTAGAGGAGAATTTTTCTATTGCGATACATCAGGGCTGT +TTAATAGCACTTGGGATAACATTACCAGTACAAATGGCACAAAGGTAAATGAAACTGAAA +CTATAACTCTCCCATGCAGAATAAAACAAATTGTAAGAATGTGGCAGAGAGTAGGACAAG +CAATGTATGCCCCTCCTATCCAAGGAGAACTACGGTGTGAATCAAATATTACAGGACTAC +TATTAACAAGAGATGGAGGGAATAATAATCGTACAAATGAGACCTTCAGGCCTATAGGAG +GAGATATGAAGGACAATTGGAGAAGTGAATTATATAAATATAAAGTGGTAAAAATTGAAC +CACTAGGTATAGCACCCTCCAGGGCAAAAAGGAGAGTGGTGGAGAGAGAAAAAAGAGCAG +TTGGACTGGGAGCTGTCTTCCTTGGGTTCTTAGGAGCAGCAGGAAGCACTATGGGCGCGG +CGTCATTAACGCTGACGGTACAGGCCAGACAATTATTGTCCGGTATAGTGCAACAGCAAA +GCAATTTGCTGAGGGCTATAGAGGCTCAACAACATCTGTTGAAACTCACAGTCTGGGGCA +TTAAACAGCTTCAGGCAAGAGTCCTGGCTCTGGAGAGATACCTAAGGGATCAACAGCTCC +TAGGAATTTGGGGCTGCTCTGGAAAACTCATCTGCACCACTACTGTGCCTTGGAACTCTA +GTTGGAGTAATAAAACCTATACTGACATATGGGACAACATGACCTGGCTGCAATGGGATA +AAGAAATTAGCAATTATTCAGACATAATATATAAGCTAATTGAAGACTCGCAGAGCCAGC +AGGAACAGAATGAACAAGACTTATTGGCATTGGACAAGTGGGAAAACCTGTGGAATTGGT +TTAGCATAACAAATTGGCTATGGTATATAAAAATATTTATAATGATAGTAGGAGGCTTGA +TAGGTTTAAGAATAGTTTTTGCTGTGCTTACTATAATAAATAGAGTTAGGCAGGGATACT +CACCTTTGTCGTTCCAGACCCTTCCCCACCACCAGAGGGAACCCGACAGGCCCGAAAGAA +TCGAAGAAGGAGGTGGAGAGCAAGACAGAGACAGATCCGTGCGCTTAGTGAGCGGATTCT +TAGCACTTGCCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGATTGAGAG +ACTTTGTCTTGATTGCAGTGAGGGCGGTGGAGCTTCTGGGGGAAGCCCTCAAATATCTGT +GGAACCTTCTGATATACTGGGGTCAGGAACTGAAGAATAGTGCTATTAGTTTGCTTGATA +CAATAGCAATAGCAGTAGCTAACTGGACAGATAGAGTTATAGAAATAGGACAAGGAGCTA +TTAGAGCTATTCGCAACGTACCTAGAAGAATAAGACAAGGCGCCGAAAGGTTTTTGCTAT +AACATGGGTGGAAAGTGGTCAAAAAGCAGCATAGTGGGATGGCCTAAGGTTAGGGAAAGA +ATAAGACAAACCCCTGTAGCAGCAGACACCCCTGGAGCAGCAAAAGGAGTAGGAGCAGCA +TCTCGAGATTTAGATAGACATGGAGCAATAACAAACAGCAATACATCAGCTACTAATGCT +GATGTTGCCTGGCTGGAAGCACAAGAGGATGAGGACGTAGGCTTTCCAGTCAGGCCACAG +GTACCTTTAAGACCAATGACTTATAAGGCAGCCTTCGATCTCAGCCACTTTTTAAAAGAA +AAGGGGGGACTGGAAGGGCTAGTTTACTCCAAGAAAAGACAGGAGATCCTTGATCTATGG +GTTTATCACACACAAGGATTCTTCCCAGATTGGCAGAACTACACACCAGGGCCAGGGGTT +AGATACCCACTGACCTTCGGGTGGTGCTTCAAACTAGTACCAGTGGATCCAACAGAGGTA +GAGGAAGCCAATGAAGGAGAGAACAACAGTTTATTACATCCCATCAGTCAGCATGGAATG +GAGGACGAAGACAGAGAGACGCTGGTCTGGAGATTTGACAGCCACTTGGCCTTGAAACAC +AGAGCTCTAGAGATGCATCCGGAGTTTTACAAAGACTGCTGACACAGAAGTTGCTGACAC +AGGAGTTGCTGACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGTGTGGTTGGGGAGG +AGTTTGGGAGTGGCTAACCCTCAGATGCTGCATATAAGCAGCTGCTTCTCGCTTGTACTG +GGTCTCTCTTGCTAGACCAGATTTGAGCCTGGGAGCTCTCTGACTAGCAGGGGAACCCAC +TGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGC +>CRF02_AG.CM.2001.0.01CM_0005BBY.AY371123 AY371123 +GCGAGAGCGTCAGTGTTAAGTGGGGGAAAATTAGATGCATGGGAGAAAATTCGGTTAAGG +CCAGGGGGAAAGAAAAAATATAGACTAAAACATCTAGTATGGGCAAGCAGAGAGCTGGAA +AGATTCGCACTTAACCCTGGCCTTTTAGAAACAACAGAAGGATGTCAACAAATAATAGAA +CAGTTACAATCAAATCTCAAGACAGGATCAGAAGAAATTAAATCATTATACAATACAGTA +GTAGTCCTTTGGTGCGTACATCAAAAGATAGAGATAAAAGACACCAAGGAAGCCTTAGAT +AAATTAGAGGAAAAGCAAAATAAGAGCAAGCAACAGGCACAGCAGGCAGCAGCTGGCACA +GGAAGCTGCAGCCAAAATTACCCTATAGTGCAAAATGCACAAGGGCAAATGGTACATAAC +CCCATGTCACCTAGGACTTTGAATGCATGGGTAAAGGTAGTAGAAGAAAAGGGATTCAGC +CCAGAAGTAATACCCATGTTTTCAGCATTATCAGAGGGAGCCACCCCACAAGATCTAAAT +ATGATGCTAAACATAGTGGGGGGACACCAGGCAGCAATGCAGATGTTAAAAGATACCATC +AATGAGGAAGCTGTAGAATGGGATAGAGCACATCCAGTACATGCAGGGCCTATTCCACCA +GGTCAAATGAGAGAGCCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAAGAG +CAAATGGGATGGATGACATCCAATCCACCTATCCCAGTGGGAGAAATCTATAAAAGATGG +ATAATCTTAGGATTAAATAAAATAGTAAGAATGTATAGCCCTGTCAGCATCTTGGACATA +AGACAAGGGCCAAAAGAACCCTTTAGAGATTATGTAGATAGGTTCTTTAAAACTTTGAGA +GCTGAACAAGCTTCGCAGGAGGTAAAAAACTGGATGACAGAAACCTTGCTGGTCCAAAAT +GCGAATCCAGACTGTAAGTCCATTTTAAGAGCATTAGGATCAGGGGCTACATTAGAAGAA +ATGATGACAGCATGCCAGGGAGTGGGAGGACCTGGTCATAAAGCAAGGGTTCTGGCTGAG +GCAATGAGCCAAGTACAACAGACAAATGTAATGATGCAGAGAAGCAACTTTAGGGGCCAA +AGAACAATAAAGTGTTTCAACTGTGGCAAAGAAGGACACCTAGCCAGAAATTGCAAGGCC +CCTAGGAAAAGGGGTTGTTGGAAATGTGGGAAGGAAGGACACCAAATGAAAGACTGCACT +GAGAGACAGGCTAATTTTTTAGGGAAAATTTGGCCTTCCAGCAAGGGGAGGCCAGGGAAT +TTTCCTCAGAGCAGACCGGAGCCAACAGCCCCACCAGCAGAGAGCTTTGGGATGGGGGAA +GAGATATCCTCCTCTCCGAAGGAGGAACCGAGGGACAAGGGATTATATCCTCCCTTAGTT +TCCCTCAAATCACTCTTTGGCAACGACCCTTAGTCAAAGTAAAAATAGGGGGACAGCTGA +TAGAAGCCCTGTTAGACACAGGAGCAGATGATACAGTATTAGAAGAAATAAATTTACCAG +GAAAATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATTAAAGTGAGACAATATG +ATCAGATACTTATAGAAATTTGTGGAAAAAAGGCTATAGGTACAGTGTTAGTAGGACCTA +CACCTGTCAACATAATTGGACGAAATATGTTGACTCAGATTGGTTGTACTTTAAATTTTC +CAATTAGTCCTATTGAAACTGTGCCAGTAAAATTAAAGCCAGGAATGGATGGTCCAAAGA +TTAAACAATGGCCATTGTCAGAGGAAAAAATAAAAGCATTAACAGACATTTGTATGGAGA +TGGAAAAGGAAGGAAAAATTTCAAGAATTGGGCCTGAAAATCCATACAATACTCCAGTAT +TCGCCATAAAGAAAAAAGATAGTACTAAATGGAGAAAATTAGTAGATTTTAGAGAACTCA +ATAAAAGAACTCAAGACTTCTGGGAGGTCCAATTAGGAATACCTCATCCCGCAGGATTAA +AAAAGAAAAAATCAGTAACAGTACTAGATGTGGGGGATGCATATTTTTCAGTTCCCTTAG +ATAAAGAATTTAGAAAGTATACTGCATTCACTATACCTAGTGTAAATAATGAGACACCAG +GAATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTTC +AGGCTAGTATGACAAAAATCTTAGAGCCCTTTAGAACAAACAATCCAGAAATAGTGATTT +ACCAATATATGGATGATTTATATGTAGGTTCTGACTTAGAGATAGGGCAACATAGAGCAA +AAATAGAGGAGTTAAGAGAACATCTATTGAGATGGGGATTTACCACACCAGACAAAAAAC +ATCAGAAAGAACCTCCATTTCTTTGGATGGGATATGAACTCCATCCTGACAAATGGACAG +TCCAGCCTATACATCTGCCAGAAAAAGACAGCTGGACTGTCAATGATATACAGAAATTGG +TGGGAAAACTAAATTGGGCAAGTCAGATTTATGCAGGAATTAAAGTAAAGCAACTGTGTA +GACTCCTCAGGGGAGCCAAAGCACTGACAGATATAGTACCACTGACTGAGGAAGCAGAAT +TAGAATTGGCAGAGAACAGGGAAATTTTAAAAGAGCCTGTACATGGAGTCTATTATGACC +CAGCAAAAGACCTAGTAGCAGAAATACAGAAACAAGGGCAAGACCAATGGACGTATCAAA +TCTATCAAGAACCATTTAAAAATCTAAAAACAGGGAAATATGCAAAAAAGAGGTCTACTC +ACACTAATGATGTAAAACAATTAGCAGAAGTAGTGCAAAAAGTGACTACAGAAAGCATAG +TAATATGGGGAAAGGCCCCTAAGTTTAGACTACCCATACAAAAAGAAACATGGGAGGCAT +GGTGGATGGAGTATTGGCAGGCTACCTGGCTTCCTGACTGGGAATTTGTCAATACCCCTC +CTCTAGTAAAATTATGGTACCAGTTAGAGAAAGATCCAATAGTAGGGGCAGAAACTTTCT +ATGTAGATGGGGCAGCTAATAGGGAGACTAAGCTAGGAAAAGCAGGGTATGTCACTGACA +AAGGAAGACAAAAGGTTGTTTCCCTAACTGAGACAACAAATCAAAAGACTGAATTACATG +CAATTCATCTAGCCTTGCAAGATTCAGGATCAGAAGTAAATATAGTAACAGACTCACAGT +ATGCATTAGGAATCATTCAGGCACAACCAGACAGGAGTGAATCAGAGATAGTCAATCAAA +TAATAGAGAAGCTAATAGAAAAGGACAAAGTATATCTGTCATGGGTACCAGCACACAAAG +GAATTGGAGGTAATGAACAAGTAGATAAATTAGTCAGTAGTGGAATCAGGAAGGTATTAT +TTTTAGATGGCATAGATAGAGCCCAAGAAGAACATGAAAGATATCACAGCAATTGGAGAG +CAATGGCTAGTGATTTTAATCTGCCCCCTATAGTAGCAAAAGAAATAGTGGCCAGCTGTG +ATAAATGTCAGCTAAAAGGGGAAGCTATGCATGGACAAGTAGACTGTAGTCCAGGAATAT +GGCAATTAGATTGTACACATTTAGAAGGAAAAATTATCATGGTAGCAGTCCATGTAGCCA +GTGGCTATATAGAAGCAGAAGTTATCCCAGCAGAAACAGGACAGGAGACAGCATATTTTA +TATTAAAATTAGCAGGAAGATGGCCAGTGAAAGTAATACACACAGACAATGGCAGCAATT +TCACCAGTGCTGCAGTAAAGGCAGCATGTTGGTGGGCAAATGTCACACAAGAATTTGGAA +TTCCTTATAATCCCCAAAGCCAAGGAGTAGTGGAATCTATGAATAAAGAATTAAAGAAAA +TTATAGTGCAGGTTAGGGATCAAGCTGAACACCTTAAGACAGCAGTACAGATGGCAGTAT +TCATTCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAA +TAGACATAATAGCATCAGATATACAAACTAAAGAACTACAAAAACAAATTATAAAAATTC +AAAATTTTCGGGTTTATTACAGGGACAGCAGAGATCCAATTTGGAAAGGACCAGCAAAAC +TACTCTGGAAAGGTGAAGGGGCAGTAGTAATACAGGACAATAGTGATATAAAGGTAGTTC +CAAGAAGAAAAGCAAAAATTATTAAGGATTATGGAAAACAGATGGCAGGTGATGATTGTA +TGGCAGGTAGACAGGATGAGAATTAGAACATGGAACAGTTTAGTAAAGCATCATATGTAT +GTCTCTAAGAAAGCTAAAAATTGGTTTTACAGACATCACTATGAAAGTAGGCATCCAAAA +TTAAGTTCAGAAGTACACATCCCACTAGGAGATGCTAGATTAGTAATAAGAACATATTGG +GGTCTGAATACAGGAGAAAGAGACTGGCACTTGGGTAGTGGGGTCTCCATAGAATGGAGA +CAGAGAAGATATAGCACACAAATAGATCCTGACCTAGCAGACCAACTGATTCACCTGCAT +TATTTTCACTGTTTTTCAGAATCTGCCATAAGGAAAGCCATATTAGGACAAGTAGTTAGA +CCTAGGTGTGAATATCAAGCAGGACATAATAAGGTAGGATCTCTACAATATTTGGCACTG +AAAGCATTAGTAACCCCAACAAAGATAAGGCCACCTTTGCCTAGTGTTAAGAAATTAACA +GAAGATAGATGGAACAAGCCCCAGAAGACCAGGGGCCACAGAGGGAGCCATTCAATGAAT +GGACATTAGAATTGTTAGAAGAGCTTAAACATGAAGCTGTTAGACATTTCCCTAGGCCAT +GGCTTCATGGATTAGGACAACATATCTATAACACATATGGGGACACTTGGGAAGGGGTTG +AAGCTATAATAAGAATATTACAACAGCTACTGTTTGTTCATTTCAGAATTGGGTGCCAAC +ATAGCAGAATAGGCATTATTCAGAGGAGAAGAGGCAGAAATGGATCCAGTAGATCCTAGA +CTAGAGCCCTGGAACCACCCGGGAAGTCAGCCTACAACTGCTTGTAGCAAATGTCATTGT +AAAGTGTGTTGCTGGCATTGCCAATTGTGCTTTCTGAACAAGGGCTTAGGCATCTCCTAT +GGCAGGAAGAAGCGGAGACGCCGACGAGGAACTCCTCAGAATCATCAGGACTATCAAAAT +CCTGTACCAGAGCAGTGAGTAGTATTAATTAGTATATGTGATGCAATCTTTACATATAGC +TGCCATAGTAGGACTAGTAGTAGCAGTCATAGCAGCCATAGTTGTGTGGACCATAGTAAT +TATAGAGTATAGGAAGATAAGAAAACAGAAGAAAATAGACAGGTTACTTGATAGAATAAG +TGAAAGAGCAGAAGATAGTGGCAATGAGAGTGAGGGGGACACAGAGGAATTATCCAAGCT +TATGGAAATGGGGAACTATGGTTTTTTGGGTAATAATAATTTGTAGTGCTGAAGATTTGT +GGGTCACGGTCTACTATGGGGTACCGGTGTGGAAAGACGCAGAGACCACCCTATTTTGTG +CATCAGATGCTAAAGCATATGAGAGAGAAGCACATAATGTCTGGGCTACACATGCCTGTG +TACCCACAGACCCCAGCCCACAAGAAATATATTTGGAAAATGTAACAGAACAGTTTAACA +TGTGGAAAAATAACATGGTAGAGCAGATGCATATAGATATAATTAGTCTATGGGACCAAA +GCCTAAAGCCATGTGTAAAGTTAACCCCTCTCTGCGTTACTTTAGATTGTCACCCCCTTA +GCAAAAACATAACTACTGAAATGCAGGGGGAAATAAACAACTGCACTTTCAATATGACCA +CAGTATTAAGAGATAAGAAACAGAAAATGAGCGCACTTTTTTATAGACTTGATATAGAAA +AAATTAATGGAAATAATGATAGTGGAAAGAATGATAGTGGTCAGTATAGGTTAATAAATT +GTAATACCTCAGCCATTACACAGGCTTGTCCAAAAGTATCCTTTGAGCCAATTCCCATAC +ATTTTTGTGCTCCAGCTGGTTTTGCAATTCTGAAGTGTAATGAGGAGAAGTTCAATGGAA +CAGGGCTGTGCAAGAATGTCAGCACAGTACAATGCACACATGGAATTAAACCAGTAGTAT +CAACTCAACTGCTATTAAATGGCAGTCTAGCAGGAAAAGAAGTAATGATTAGATCTGAAA +ATATCACAAACAATGCCAAAACCATAATCGTACAGTTGAGTGAGCCTGTAAAAATTGAGT +GTACCAGACCTGGCAACAATACAAGAAAAAGTGTACGCATAGGACCAGGACAAACATTCT +ATGCAACAGGTGACATAATAGGGGATATAAGAAAAGCACATTGTAATGTCAATAAAACAG +AATGGGATAGAACTTTACAACAGGTAGCTACACAATTAAAAAAGTACTTTCGGAATGCCA +CAATAGCCTTTGCTAACTCCTCAGGAGGAGATGTAGAAATTACAACACATAGTTTTAATT +GTGGAGGAGAATTTTTCTATTGCAATACAACAGACCTATTTAATAGCACTTGGAACGAAA +CCACAGAGTCAAATGGCAATATGAATCTAACAATCCCATGCAGAATAAAACAATTTGTGA +ATTTGTGGCAGAAAGTAGGACAAGCAATGTATGCCCCTCCCATCCAAGGAGAAATAAGGT +GTGAATCAAACATTACAGGATTACTATTAACAAGAGATGGAGGGGTAAATAATAATAATA +GTACGGAGATATTCAGGCCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTAT +ATAAGTATAAGGTAGTTCAAATTAAACCACTAGGTGTGGCACCTACCCATGCAAAACGAA +GAGTGGTGGAGAGAGAAAAAAGAGCAGTTGGAATAGGAGCTGTTTTCCTTGGGTTCTTAG +GAGCAGCAGGAAGCACTATGGGCGCGGCGTCAATAACGCTGACGGCACAGGCCAGACAAT +TATTGTCTGGTATAGTGCAACAGCAGAGCAATCTGCTGAGGGCTATAGAGGCTCAACAAC +ATCTGTTGAAACTCACGGTCTGGGGCATTAAACAGCTCCAGGCAAGAGTCCTGGCTCTGG 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A21T, G134N, G163T, I234L, D278S; RT-p51: D121H, I135T, S162A, T173S, V179I, E207A, R211S, Q245V, P272A, A286T, P294T, E312D, K356R, M357N, A371V, I375V, T397P, T403M, E404D, E432D, V435E; RT-p66: D121H, I135T, S162A, T173S, V179I, E207A, R211S, Q245V, P272A, A286T, P294T, E312D, K356R, M357N, A371V, I375V, T397P, E404D, E432D, V435E, Q480H, K512R, Q524K, K527G, E529D; gp120: A2V, D4E, N5Q, A32S, E57D, N71D, N102Q, T104S, -105N, -106I, -107T, -109N, -111N, F131Y, I137L, K142Q, V144I, A146S, V154T, D157G, N160S, N161S, E241D, D251N, N261D, E262S, S263P, T265N, N267S, T269V, H280R, A288T, I305V, G307R, T308S, F325L, T345M, K361G, -379S, -381E, -382L, -383N, -384D, -385N, P389Q, -436Q, I463L, V468I, K472R, K474R; gp41: R74S, S101T, D109Q, M118I, V187I, D230G, D232G, N251S, A268T, L273V, R276H, L282I, L304F, N305D, T307I, A310V, E313G, G314W, V322G, A325I, C326G, F340A, L345I; nef: A15E, I20M, T23A, E28P, E38A, T48I, A49N, T51P, N52S, P53-, D54-, E63D, G83A, D149E, K151E, E155K, E174D, R178K, K182Q; p1: N9H; p17: V7I, P48S, G49D, K58Q, I61M, G62D, Q69R, S72T, K76R, Y79F, E107V, S111R, Q116P, N124S, V128A; p2: A7V, T8Q, A11-; p24: S120N, E180D, G208A, S225G, V230I; p6: I21V, L50S; p7: R10K, I13-, I24L, K26R, R41K; pro: I15V, P39Q, L63P; rev: D7N, V16I, I21F, T91S, S92P, P100N, S103L; tat: K19T, A21P, N23T, Q35P, V36A, T40N, R53K, S61G, S62D, D67V; vif: M8V, G37N, F39V, Y44F, R77K, Q91L, V98I, G101E, L102Q, H127Q, I128V, T151K, I154V, K157T, K158R, T159I, K168I, T170A, H183P, M189I, H192C; vpr: E17Q, T19M, E21D, E25D, N28H, P37T, I63T, I70V, Q86G, A89G; vpu: V14I, I18L, Y30C, K34R, L61R, V65S, E66T, -68L, -70E, -71M, -72G, 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K14R, T21A, S39N, V72I, R166K, R284G; RT-p51: E28R, K32E, D40E, H121D, D123S, T165I, I178M, I257V, T286A, I292V, L295M, P397T; RT-p66: E28R, K32E, D40E, H121D, D123S, T165I, I178M, I257V, T286A, I292V, L295M, P397T; gp120: Q102N, N105D, T107S, N111K, -112V, -114V, -115S, -120I, -121E, -123K, -124E, E125A, I126M, Y131F, K141S, I144T, N158D, S162E, T172A, N201K, V269I, N272G, Y290F, K312E, Q316K, G322M, N323G, N327-, K334L, P335N, -372G, -375Q, -376G, -377S, S379G, E381G, N385T, S418L, N434S, N435S, Q436H, D449E, I468L; gp41: S74R, K90R, S107T, L108F, N114S, E119Q, G129D, E148D, N166Q, L210F, G230D, S251N, S256L, I264L, I301V, Q323L; nef: I10R, I16V, A32S, A42T, I43V, T44K, S45C, I48L, N49Y, A56I, R71T, M79I, K82G, F85W, K105Q, L137I, C163S, L191F, K192T; p17: I60L, D62E, I104V, T115P, P116Q, D121A, A128V; p2: N9P, S10T, -12T; p7: Q9K, K10R, R11N, K33R, D48E, T50S; pro: V13I, K41R, V77I; rev: D11E, L12I, K14R, I16V, I19L, F21I, P28L, P31T, Q74P, N82T, N84D, S86N; tat: A36V, P58N, G61S, D62G, H65P, V67D, I69L, P77H; vif: V7A, V31I, V39F, F44Y, D61E, Q105K, N140T, I159R, T180I, P183H; vpr: R36Q, I60L, I61T; vpu: P3A, V5G, A50E, R61K, V79A, D81E"}}},{"name":"CRF50_A1D_NODE_0000001","node_attrs":{"div":0.08933,"clade_membership":{"value":"CRF50_A1D"}},"branch_attrs":{"mutations":{"nef":["T50H"]},"labels":{"aa":"nef: 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A68E, L81I, V109I, G113R; tat: L8I, E9D, Q60H, P84Q; vif: Y30H, V31I, S116A, D134E, R167K, Q178R, H183R; vpr: H45Y, R85P; vpu: V5Q, V14L, K32R, 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L45I, K71Q, V112T, S119R, G163E; RT-p51: V111I, E122A, I142T, E169D, A288T, I293V, M357I, R358K, A376S, I435M; RT-p66: V111I, E122A, I142T, E169D, A288T, I293V, M357I, R358K, A376S, I435M; gp120: D4E, N5D, L6S, T22A, N52S, -107S, -109N, -110T, -111V, -112S, -116L, -118E, -119M, I156M, D157G, N158D, K212T, A253T, V264I, D293N, T308A, Q316E, K323A, S324A, N328T, T330Q, T365I, W367G, S373-, -379N, -381S, -382T, -383D, -384D, N432K, N433-, S435A, K474R; gp41: I69L, N96T, D109N, S163N, N166Q, R259Q, N305D, G326A, V329I, F340L; nef: D28E, K39R, E63G, Y81F, Y102W, C169N, M173G, E174D, R178K; p17: E15D, R20Q, R30K, R91K, E93Q, A118V, A119L, S126N, Q130H; p2: N9S; p24: V230I; p6: T39A; p7: G8N, D48E; pro: I15V, L19Q, K70T, I72V; rev: D7E, S8N, L12F, F21W, Q24K, P31T, P72S, G90E, P100S; tat: P21S, K29I, G53R, Q54K, R57G, P58L, Q63K, P68A, P70Q, P77H; vif: D61E, T67K, Y110H, H127Q, A155K; vpr: L68M, Q77R, T84Q, Q86T, R87A, S93P; vpu: S3P, V14A, R47I, E58D, E66D, 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R284G; RT-p51: I293V, K297E, V329I, G335S, R356K, I435V; RT-p66: I293V, K297E, V329I, G335S, R356K, I435V, P468S, S491P, S554N; gp120: S32A, T35A, E57I, N71D, V137L, S162R, T216S, K224R, V243I, A253V, R277-, Q300-, G307S, K309-, -378N, -381G, G431V, V468I; gp41: V24I, Q113N, E225G, I321V, V329I; nef: D24E, K151R, C169S, P176T; p17: K18S, R30K; p2: T8N; p24: G116A; p6: K31R; p7: I12T; rev: P31T, P100T; tat: K29R, L36H, Q63K, P77H; vif: V31I, K36A, K158Q; vpr: A55T, R85P; vpu: R37K"}},"children":[{"name":"JX140670","node_attrs":{"div":0.14922,"accession":"JX140670","clade_membership":{"value":"D"},"country":{"value":"CM"},"date":{"value":2010.0},"Strain_name":{"value":"DEMD10CM009"},"LANL_subtype":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["C200T","A256-","A418G","T495G","T506C","G519A","C528G","T536C","C537A","T560G","G562T","T570C","A587T","G603A","G614T","G629A","T641A","C662G","A665G","G667T","A676G","C679A","C681-","A682-","G683-","C684G","A685C","T731C","A818C","G821A","A829G","C830T","A833C","C879G","A880C","A887G","C893T","C926A","T949C","C950T","C978T","T1043C","T1052C","T1064G","A1088T","C1091T","A1115C","A1142C","C1245T","G1436A","G1458A","A1461G","A1463G","C1491T","G1496A","A1543G","A1551C","A1567G","A1642G","A1643G","G1673A","C1750T","G1766A","G1779A","A1781C","C1782A","T1783A","T1785G","C1826T","A1835G","A1907G","A1918G","G2117A","A2242G","C2263T","T2365C","A2419G","G2426A","C2452A","G2459A","T2464A","G2470A","T2479A","T2581C","A2614G","A2677G","A2705G","A2713G","A2764G","A2845T","C2857A","C2899T","C2909G","A2918C","G2926A","A2929C","A3010G","G3019A","G3027A","T3109C","T3118C","G3142A","A3145G","G3169A","A3192G","A3226G","G3238C","T3303G","G3307A","G3316A","A3391T","T3399C","A3454G","T3492C","G3523A","T3550C","C3691T","C3751T","G3770A","T3778C","A3802G","A3816G","T3850C","G3869A","T3889C","A3907G","A3985G","C4076A","G4148A","T4177G","C4192T","G4407A","C4534T","G4549A","A4555G","G4573A","A4642G","C4643G","C4645T","T4665C","T4679C","G4689A","G4774A","C4786T","A4787C","T4793C","G4829A","G4835A","G4856A","C4937A","T4988G","G5049A","C5050A","T5152C","A5159G","G5189A","A5191G","A5248C","T5281C","C5282T","C5303T","C5356T","T5451C","A5483G","T5484G","A5494T","G5496A","G5546A","C5554A","G5558A","A5564C","G5565A","G5589T","T5614C","T5626A","A5628T","G5629T","G5650A","A5707C","A5709G","G5712A","C5731T","C5756A","T5778C","A5800G","A5805C","A5840T","A6009G","G6023A","A6044C","A6045C","C6046T","G6076A","T6169A","T6171-","T6178-","A6185C","-6187C","A6188C","-6198C","A6200C","-6201A","C6202G","-6203T","-6204C","-6205G","-6206G","-6207T","-6208T","-6209A","-6210A","-6211C","-6212A","-6213C","-6214C","-6215A","-6216C","-6217C","-6218G","-6219A","-6220C","-6222C","A6226-","A6229C","A6234G","A6262G","A6266C","G6267A","A6278C","C6281A","G6284A","T6295C","G6303A","C6305A","T6307G","A6311C","A6313G","A6324G","T6328G","A6333G","G6339A","T6340G","G6379A","A6394G","A6396G","A6464C","G6526A","C6599A","C6601T","C6619T","C6632T","T6637G","A6638G","T6652C","T6655G","A6659G","T6660A","C6670T","A6683-","G6684-","A6685-","-6690G","G6712A","A6714G","G6716T","-6752A","A6754C","C6758T","A6767G","G6774-","A6776-","C6781T","A6799T","A6809G","G6810A","T6849A","T6850A","A6854G","A6856G","T6860G","C6862T","T6863G","A6887G","T6898C","T6928C","A6937C","A6947G","A6949C","-6957T","A6962G","T6964C","-6968A","-6969G","-6970G","-6972A","-6974G","-6975A","-6976C","-6977A","-6978C","-6980A","-6981G","-6982G","-6983A","-6984C","-6985T","A6989-","A6990-","T6991-","A6992-","-6998A","A7001G","A7002G","-7006T","C7014-","C7015-","A7016-","C7084T","G7088A","A7113C","A7115G","T7117G","C7127A","A7136G","G7137T","G7143A","T7144A","A7154T","A7155C","C7156G","A7158G","-7160C","-7163G","T7165G","A7167C","A7237G","C7264A","T7313C","A7315G","G7477A","A7494T","A7552G","C7597T","G7628A","A7640G","A7641G","A7678C","T7681G","T7690G","A7714C","A7744G","A7799C","A7832G","T7864C","G7882A","A7885G","G7896A","T7912C","C7913T","C8080A","T8112C","G8117A","A8184G","C8213T","A8216G","G8245A","T8265C","A8271T","G8280T","A8294C","A8299C","G8329A","T8375A","A8402G","T8414G","A8490C","T8492G","C8503A","A8636T","A8657G","T8666A","G8753A","G8762A","T8789C","A8806G","A8816G","A8827C","A8844G","A8885G","G8893A","T8897C","C8921T","A8924G","G8931C","G8942A","G9016-","T9019G","G9095A","T9098C","C9129T"],"INT":["K14R","V32I","L101I","R211K"],"RT-p51":["V8I","V111I","E122K","D123E","A200T","K204E","E250D","P272A","K275Q","Q278H","R311K","K366R","T377M","M403R","E432D","V435A"],"RT-p66":["V8I","V111I","E122K","D123E","A200T","K204E","E250D","P272A","K275Q","Q278H","R311K","K366R","T377M","M403R","E432D","V435A","V466A","I517L","V559I"],"gp120":["N52S","N64P","D105E","V106T","-107H","-109T","-110T","-111D","-112T","N113D","S114M","S115R","E125-","K127-","V136M","R138Q","K142Q","Q143K","E144K","R150K","L151M","I153L","D157G","N158K","N160S","R162K","K204Q","L249I","L260F","N261K","I269E","-277S","Q287R","A288S","-300N","H302Y","I305V","S307T","T308N","Q315H","K319E","N328K","I332K","K334E","S336A","S337A","T345A","K361Y","T365G","N368I","S370G","-372R","S373N","-374D","-375T","-376R","-377T","-379G","-384D","T387I","I388-","A412K","N420T","I421V","L425I","R428V","G430E","N434S","S436P","N437E","E438A"],"gp41":["Q64L","D109N","N113G","E125D","N126K","E137D","S165T","N166Q","I177V","M193I","R198K","I270T","Q294R","L304F","N305D","V321A","Q323L","C326F","N331H","F340L"],"nef":["I20M","T50Q","A54D","E64D","E98D","D108E","E155G","N162T","M168V","R184K","E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E197Q; p1: K4R; p17: K28R, S54A, G62S, Q65E, R76I, F79H, E90K, E93D, D102E, N109K, S111I, K114R, A115E, Q116A, Q117-; p2: M4I, S10-, A12T, I13V; p24: E29D, N33S, Q50A, I73T, E128D; p6: P11L, A12E, -23L, P24S, S25-, E34N, L35K, Y36D, T39A; p7: P9S, K26R, K34R; pro: L10F, I13V, N37D; rev: D11N, R17Q, S25I, L78I, G90E; tat: H36R, T40S, R57K, Q60K, K63T, E71D; vif: N19R, T20I, Y27H, A35T, R63K, T67I, D117E, D134E, A155K, M189T; vpr: T19A, E29K, E48D, T84I; vpu: S3P, L7I, A8S, A15T, K34Q, A50E, M65V, E66D, D78I"}}},{"name":"MN153488","node_attrs":{"div":0.14864999999999998,"accession":"MN153488","clade_membership":{"value":"D"},"country":{"value":"CM"},"date":{"value":2008.0},"Strain_name":{"value":"08CMBDSH25"},"LANL_subtype":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["A435C","T466A","A513T","G520C","A530T","G546A","A548T","C558T","A569G","G579C","G582T","A585G","C586T","A587G","T602G","A604C","C623T","T635C","A666T","G677A","A706G","G752A","C774A","C794T","T992G","G1002A","G1019A","T1094C","A1101G","A1112G","G1139A","T1187C","A1217G","C1229T","T1344A","A1404G","C1440A","A1441G","A1486G","G1487A","G1488A","C1490T","C1517T","A1656C","G1670A","C1676T","G1687A","C1692A","A1736G","T1754G","T1791A","G1794A","A1832T","A1841G","G1846A","C1853A","A1879G","A1926G","G1972A","C2044T","T2086C","A2215G","T2302A","T2323C","A2329G","T2338C","G2341A","C2452T","G2686A","A2693G","A2698G","A2727G","A2845G","G2847A","G2902A","G2968A","A2977G","G3004A","T3022C","T3121C","C3178T","A3196G","T3225C","G3388A","G3431T","A3532G","A3643C","T3644A","A3718G","G3796A","T3805G","C3814T","C3922A","A3934G","T3943C","T3970C","A3989G","T4085C","A4178G","C4318A","T4321C","G4351A","C4569T","G4581A","T4678A","T4679A","G4695A","C4726A","G4751A","G4778A","T4910C","C5018A","G5137A","A5155G","T5170C","A5213G","A5215G","G5225A","T5292C","C5303A","C5311T","A5312G","T5314C","A5360T","C5412T","G5437C","T5475C","G5538A","A5586G","A5612C","T5621A","G5652A","C5653A","A5659C","A5685C","G5711A","A5746G","G5747A","G5781T","G5784A","A5794C","C5795A","C5851A","A5853G","G5864A","A5867C","T5869G","T5871C","G5872A","A5884G","A5918G","C5920T","G6023T","G6029A","A6060G","C6097T","C6110G","C6139A","C6151T","-6170G","-6179G","-6180T","-6181G","A6182T","T6184C","-6187A","A6188G","A6191G","T6193C","G6195A","-6198G","-6201G","-6222A","-6224A","-6225G","A6230C","A6251G","A6275G","A6285C","T6287C","A6292T","A6311G","A6329C","C6336G","T6337G","T6340C","C6364T","A6388T","G6434-","A6461C","A6462C","G6463A","C6477A","C6481T","C6483A","G6532A","T6551A","G6566T","G6605A","G6628A","G6631A","A6641G","A6685G","A6689-","A6703G","C6713A","C6717T","C6719T","C6721T","T6722G","A6723C","T6724A","A6732G","-6775T","C6777A","A6779G","A6811T","G6818A","A6821G","C6835T","A6837T","A6839T","A6856C","C6857T","A6868G","A6884G","A6891T","G6906C","T6935C","C6938T","G6948C","-6957A","G6963A","A6967T","-6972G","-6974A","-6975C","-6976A","-6977G","-6978G","-6993C","-6994A","-6998T","C6999T","A7001C","A7005G","-7006A","C7008A","A7009T","T7047G","C7078T","A7089C","C7094G","A7095T","A7101G","T7106G","C7107A","C7124T","G7145A","T7147G","A7148G","A7149G","T7159G","-7160T","-7163A","T7217C","A7219G","A7238G","A7275G","T7321C","T7386C","G7441A","T7444G","G7459A","G7519A","A7542G","T7565G","T7567A","T7604A","G7608C","G7620A","A7621G","C7625G","A7629C","G7631A","T7633A","G7642T","C7702A","A7706C","A7721G","A7734C","C7770A","A7790G","G7791A","C7797G","A7801C","C7843G","G7915C","A7918G","A7984C","A7992G","G7998A","C7999T","G8001C","G8014A","A8032G","C8033A","C8051A","A8093C","G8105A","C8119A","G8173A","G8255A","A8262C","G8276A","C8277T","A8323T","T8366G","T8369C","A8378G","G8412C","A8413C","A8455C","A8458G","A8491G","C8494A","C8500A","T8501G","A8516G","A8531G","G8588A","G8643A","A8647G","C8648G","A8657C","C8687T","C8740T","G8772C","T8786A","A8793G","A8801G","G8822A","T8843C","G8848A","G8852A","C8869A","G8888A","A8909C","A8918G","A8922G","A8923C","T8939C","C8960T","C8966A","G8968A","C8971T","G9030T","C9072T"],"INT":["D10E","I72V","T125A","I135V","F181L","A265V","R269K"],"RT-p51":["K211R","S251N"],"RT-p66":["K211R","S251N","A446S","E516D"],"gp120":["D4N","N5Q","L6S","T22A","I57L","E59K","K69R","Q86E","-107K","N108V","-109D","-123K","-124R","-126L","I133V","V136I","K141E","E144A","Y145H","I153V","N159H","T161R","G194-","K203P","T208K","P210Q","L233M","A238S","D251N","E262K","T263A","I269M","S278-","I279-","T308K","-309D","K319S","G322R","K323E","N328I","T329S","K334N","P335S","T344A","H346L","G351A","K361Q","S370N","-372S","S373T","-374G","-379N","-382L","-383Q","-384G","T385N","M398R","Q414V","K416R","S418E","V431M","N432G","S435K","R462G","K474R"],"gp41":["V28A","Q80R","S88A","S101T","S102T","R106K","L108V","D109A","D110K","N133K","I135L","I140V","K144T","A156E","S163D","D230G","G232D","R233T","L244I","I264L","A268T","N272E","V318I","E320A","A325I"],"nef":["S8R","E24P","E38A","K39R","T50S","T51N","A53E","V101I","Y102W","K105N","T133I","E144Q","R151G","S169N","T176K","K194A"],"p1":["N9H"],"p17":["I34L","F44Y","I60L","G62A","Q65H","I68L","G71S","L75F","F79Y","V82L","A83S","T84V","H89Q","E90A","S111C","N124S"],"p2":["Q6R","S10A","A12-"],"p24":["L15I","H87Q","V91I","M96I","I124V","L205M","S225G"],"p6":["S3N","P5T","L38I"],"p7":["K7R","G8S"],"pro":["T12S","I15V","L19I","K43R"],"rev":["S8N","T15A","Q24R","Q51Y","G56S","T62D","A68E","N82T","S86N","P91T","V109I"],"tat":["A21P","D61G"],"vif":["I31K","G37R","P47H","R184K","N190S"],"vpr":["I37V","G41S","I63T","L67I","I70V"],"vpu":["Q2P","V5E","L16I","I18L","R35K","R4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D10E, I72V, T125A, I135V, F181L, A265V, R269K; RT-p51: K211R, S251N; RT-p66: K211R, S251N, A446S, E516D; gp120: D4N, N5Q, L6S, T22A, I57L, E59K, K69R, Q86E, -107K, N108V, -109D, -123K, -124R, -126L, I133V, V136I, K141E, E144A, Y145H, I153V, N159H, T161R, G194-, K203P, T208K, P210Q, L233M, A238S, D251N, E262K, T263A, I269M, S278-, I279-, T308K, -309D, K319S, G322R, K323E, N328I, T329S, K334N, P335S, T344A, H346L, G351A, K361Q, S370N, -372S, S373T, -374G, -379N, -382L, -383Q, -384G, T385N, M398R, Q414V, K416R, S418E, V431M, N432G, S435K, R462G, K474R; gp41: V28A, Q80R, S88A, S101T, S102T, R106K, L108V, D109A, D110K, N133K, I135L, I140V, K144T, A156E, S163D, D230G, G232D, R233T, L244I, I264L, A268T, N272E, V318I, E320A, A325I; nef: S8R, E24P, E38A, K39R, T50S, T51N, A53E, V101I, Y102W, K105N, T133I, E144Q, R151G, S169N, T176K, K194A; p1: N9H; p17: I34L, F44Y, I60L, G62A, Q65H, I68L, G71S, L75F, F79Y, V82L, A83S, T84V, H89Q, E90A, S111C, N124S; p2: Q6R, S10A, A12-; p24: L15I, H87Q, V91I, M96I, I124V, L205M, S225G; p6: S3N, P5T, L38I; p7: K7R, G8S; pro: T12S, I15V, L19I, K43R; rev: S8N, T15A, Q24R, Q51Y, G56S, T62D, A68E, N82T, S86N, P91T, V109I; tat: A21P, D61G; vif: I31K, G37R, P47H, R184K, N190S; vpr: I37V, G41S, I63T, L67I, I70V; vpu: Q2P, V5E, L16I, I18L, R35K, R47E, E58D, T63Q, D78N, 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K14R, N17S; RT-p51: I135T, E207Q, R211K; RT-p66: I135T, E207Q, R211K; gp120: A3E, S32A, -110T, -112T, -113N, -123K, V137I, R150K, I242V, I243M, A253T, H302Y, K328T, P341L, V468I; gp41: R106K, Q113E, E148D, N160T, N195K, N239T, A243S, C326G, L330I; nef: I16V, D24E, K39R; p6: S25P, E29D, K42R, L50S; pro: E35D, A71V; rev: V16I, E57N, S61E, T62S; tat: G62D; vif: Y30H, E61D, P156S; vpu: I18L, K34R, 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S24G, D25E, L28I, M50I, A91E, S119R, T122I, A124S, T218I; RT-p51: D123E, T165I, E169D, T200I, P272Q, A288S, I329L, G335E, A376S, T377L, G379C, K385R, T386I, E399D, T400L, I403V; RT-p66: D123E, T165I, E169D, T200I, P272Q, A288S, I329L, G335E, A376S, T377L, G379C, K385R, T386I, E399D, T400L, L452I, V466I, V467I, K527Q, V559I; gp120: S1N, A2G, E3K, E4K, N5D, T21S, I56M, N64S, H77Q, -106L, -107K, -109D, -111N, -114S, -115S, -116S, -117G, -118R, -119M, -120I, -121M, -122E, -124E, K127R, R138E, K142E, Q143K, P155Q, I156M, N159T, N160T, T161-, S162-, T170I, K224R, T253I, V258I, L260F, E262K, T275R, R278K, I279T, -280S, -281I, -284G, -285Q, -286G, -287Q, -288A, -289L, -290Y, -291T, -292S, -293Q, -294K, I298V, R299K, I305V, E309D, N311Q, T313M, L314I, Q316E, L325Y, T330R, T332E, P335S, T345R, S365N, S373-, N378-, T380-, I386-, T387-, L388-, I396V, M398L, G401T, K404T, I411R, A432K, N437T, T439I, R472G, E479Q, K482R; gp41: A6V, V33L, L54M, H91L, T96A, D109E, E113G, M115L, Q119E, D137K, I140T, K195R, P213S, E220D, I222T, R229L, A310V, V311T, V318I, V322A, I332V, L340A, L343F; nef: S8R, T23A, A27S, V33A, C55T, Y81F, E98D, K104Q, Y120F, I133V, Y135F, E144K, E155K, A156L, E158A, T161D, M168L, E174D, P176S, Q179E, K182Q, R184K, N186D; p17: A15K, K18G, R39N, S54A, A67S, Q69K, L75I, K76Q, E90Q, R91G, E102D, S111N, K114Q, D121G, Q127N; p2: A7V, N9G, A11T; p24: P123A, S225G; p6: P24-; p7: I12S, I13V, K26R, R41K, D48E; pro: L19I, M36I, N37D, I72E; rev: F21I, P31L, R48G, N84D, E87A, P100T, S106P, V109I; tat: R19E, A21P, H60N, V67D, I69V, K71E, K85T; vif: V31I, K36Q, F39L, E78D, R93K, M109I, K122Q, H127R, I128V, E134D, Q136P, K141Q, T159R, K181R, S186N; vpr: A55T, I70T; vpu: I7L, A8G, V13I, V14L, Y30C, I33L, R35K, E58D, K63A, H74L, D78N"}}},{"name":"KJ787683","node_attrs":{"div":0.14211,"accession":"KJ787683","clade_membership":{"value":"D"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_RJ108"},"LANL_subtype":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["C200T","A263T","A425G","A437C","C482T","C525T","A557G","A585G","C586T","A604C","G607A","G614T","G615A","A645T","A661G","G671T","G687A","A697C","G709A","G771T","A809G","A836G","C890T","C897T","T988C","T992G","T1003A","G1005C","A1007G","G1016A","G1019A","G1077A","C1091T","C1137T","G1192A","A1208G","T1214C","C1229T","C1253A","C1304A","A1328G","A1337G","G1388A","G1397A","C1406T","A1418G","G1450A","T1457C","A1464C","T1483A","G1553A","G1562A","G1670A","G1673A","T1679C","A1691G","G1725A","G1736A","T1741C","-1746C","-1747C","-1748C","C1749T","C1751T","A1781C","A1835G","G1846T","T1895C","C2071T","C2083T","A2140G","T2206A","G2241A","A2242G","C2281T","A2344G","A2491C","G2548A","A2560C","A2569T","A2627G","A2629G","C2671T","A2674G","A2722G","A2734T","A2752G","T2788G","A2818G","C2831T","A2841G","G2847T","G2869A","T2905A","A2951G","A2972T","G2984A","A3058C","C3067A","A3095G","G3166A","A3214G","G3221A","G3250A","G3280A","T3303C","G3388A","C3394T","T3436C","C3444G","G3477A","C3497T","G3523A","G3529A","T3550C","G3562A","A3571G","A3595G","A3622G","G3651A","G3664A","C3665G","C3692T","A3745G","A3808G","G3989A","C3994T","C4021A","T4024C","G4057A","A4084G","A4106C","G4112A","C4129T","T4147A","A4196G","G4252A","A4315T","A4354G","A4385C","C4534T","A4642G","T4676C","T4701A","G4708A","A4709G","C4757T","G4770A","C4771G","C4776T","G4829A","A4858C","A4863G","T4914C","A4937G","G4953A","T4967G","T4973C","A5042C","G5049A","A5122G","A5173G","T5188G","T5203C","G5212A","A5213G","A5215G","C5237T","A5284C","T5293G","C5294T","G5296A","T5303C","C5356T","C5398T","A5446C","C5452T","A5453T","G5587A","C5602T","G5650A","C5653G","T5654G","T5669C","G5700A","A5718G","T5829G","A5840T","A5907G","C5917T","T5941C","T5971C","A6020G","G6029A","A6030C","G6079A","A6092G","A6142C","T6155C","C6160T","G6167A","-6175T","A6177C","A6186G","A6194T","G6195T","T6196A","A6200G","A6212C","A6215C","A6219T","A6221C","G6224A","A6226C","A6233C","A6273G","A6320T","C6325A","A6330G","T6331C","A6333G","C6337T","T6358C","T6382G","A6430T","A6505G","A6508G","A6606G","A6661C","G6688-","A6689-","C6690-","A6691-","T6692-","C6693-","T6696C","-6697A","-6698C","-6699A","-6700A","-6701A","-6702T","G6716A","C6719T","G6774A","G6779A","A6785G","A6790T","A6791G","A6814G","A6821G","A6822G","A6854C","T6863A","C6864T","G6935A","G6936A","T6949C","A6957T","C6963G","T6964C","-6971A","-6972A","-6973T","-6974A","-6975A","-6976T","-6977A","A6984G","-6985T","A6990G","-6997T","-6998A","-6999A","-7000T","A7002G","G7004A","-7006T","A7013C","T7105C","G7132A","A7138G","G7146A","A7148G","A7149G","A7152T","A7154T","G7155C","C7158A","T7159G","-7160G","C7171T","T7172G","G7190A","A7255G","G7357A","C7407T","C7429T","C7498T","A7542G","A7589T","T7604A","T7624C","A7627G","G7628A","T7630C","A7666G","G7676A","G7701A","A7706C","A7714C","A7744G","T7748C","G7777A","A7790G","G7791A","C7792T","A7800G","A7818G","A7885G","T7888G","A7918G","A7969C","C7988A","C8005A","T8007C","G8017C","A8019T","C8028T","T8047C","A8055G","C8062T","A8076G","A8086C","T8097C","G8105A","A8118G","G8158A","G8170A","A8180G","C8221T","T8223C","A8227T","G8245A","T8257A","G8267T","G8276A","C8277T","T8293C","C8302T","G8323A","C8330G","T8331C","A8342G","C8351T","A8378G","A8503C","G8534A","A8536G","G8537A","G8540A","C8543T","C8552T","G8561A","C8590G","G8595C","A8597G"],"INT":["V72I","K111Q","V113I","I141V","I204L"],"RT-p51":["R49K","I178V","K249R","S251I","T286A","I293L","E297K","D324E","N334D","A376T","I403T","M435I"],"RT-p66":["R49K","I178V","K249R","S251I","T286A","I293L","E297K","D324E","N334D","A376T","V403T","M435I","T450S","R461K","P468S","S519N","Q524E"],"gp120":["K18R","I56V","E59T","I80V","D105S","-106A","-107N","-109C","-111S","-114L","-115T","-116G","-122P","K123R","-124L","K127Q","K140R","I156L","D157E","N159S","N160S","N251S","Q277K","G307E","E309N","N311D","E312N","T313A","K319R","N323G","T332N","K334Q","S337I","G361K","N368K","-374T","-375N","-376N","-377S","-379S","T387Q","G431D","A432G","-433I","N434S","S435K","S436D","F440V","D446N"],"gp41":["S35F","Q80R","T96S","S101T","D109N","D125N","S133N","I135L","S163D","N166R","K172R","I235T","T239I","S242L","N251S","H258R","R261S","L265S","A268T","E272G","S293G","I307T","V322L","A325I","L343A"],"nef":["D54A","E65G","A83G","V85L"],"p17":["T84V","E90A","R91K","E93D","V94I","I104L","N109S","K112N","A118T","D121A","S125N"],"p2":["M14L"],"p24":["A14S","V86A","H87Q","V91N","A92P","M96I","A116T","R154K"],"p6":["G16R","I21T","-23P","P24S","P25Q","E34D"],"p7":["F6Y"],"pro":["I13V"],"rev":["A47E","H53N","N57H","S67P","P72S","S86N","V104M","A108T","E111G"],"tat":["K24Q","H26F","Q87S"],"vif":["N19S","F39I","R41K","A62S","K91T","R93G","Y110H","A123T","H127Q","S130R","A155T","K179R"],"vpr":["S28R","I37V","H45Y","I63M","T84I"],"vpu":["A15T","L16G","V21A"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V72I, K111Q, V113I, I141V, I204L; RT-p51: R49K, I178V, K249R, S251I, T286A, I293L, E297K, D324E, N334D, A376T, I403T, M435I; RT-p66: R49K, I178V, K249R, S251I, T286A, I293L, E297K, D324E, N334D, A376T, V403T, M435I, T450S, R461K, P468S, S519N, Q524E; gp120: K18R, I56V, E59T, I80V, D105S, -106A, -107N, -109C, -111S, -114L, -115T, -116G, -122P, K123R, -124L, K127Q, K140R, I156L, D157E, N159S, N160S, N251S, Q277K, G307E, E309N, N311D, E312N, T313A, K319R, N323G, T332N, K334Q, S337I, G361K, N368K, -374T, -375N, -376N, -377S, -379S, T387Q, G431D, A432G, -433I, N434S, S435K, S436D, F440V, D446N; gp41: S35F, Q80R, T96S, S101T, D109N, D125N, S133N, I135L, S163D, N166R, K172R, I235T, T239I, S242L, N251S, H258R, R261S, L265S, A268T, E272G, S293G, I307T, V322L, A325I, L343A; nef: D54A, E65G, A83G, V85L; p17: T84V, E90A, R91K, E93D, V94I, I104L, N109S, K112N, A118T, D121A, S125N; p2: M14L; p24: A14S, V86A, H87Q, V91N, A92P, M96I, A116T, R154K; p6: G16R, I21T, -23P, P24S, P25Q, E34D; p7: F6Y; pro: I13V; rev: A47E, H53N, N57H, S67P, P72S, S86N, V104M, A108T, E111G; tat: K24Q, H26F, Q87S; vif: N19S, F39I, R41K, A62S, K91T, R93G, Y110H, A123T, H127Q, S130R, A155T, K179R; vpr: S28R, I37V, H45Y, I63M, T84I; vpu: A15T, L16G, V21A, H74Q, D78V"}}}]}]}]}]}]}]}]},{"name":"D_NODE_0000016","node_attrs":{"div":0.06387999999999999,"clade_membership":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["C23T","G32A","A152T","G702A","A1496G","T1679C","T2195C","T2369C","G2602A","A2713G","G2926A","A2962G","A3224C","C3225A","A3230T","A3364T","A3538C","T3820C","A4069C","T4703G","T4932G","C5237T","T5293C","G5370A","G5437C","C5548A","A5560G","C5679T","A5694G","A5696G","A5702G","C5763T","A5805G","C5851A","C5998A","A6076G","C6190-","T6287C","A6313G","T6337C","T6358C","T6395A","T6457C","A6640G","A6683C","C6827T","C7127T","T7222C","G7256A","A7373T","G7668A","C7690T","G7701A","T7722C","T7748C","A7918G","G8105A","G8181T","G8280T","A8432G","C8491A","C8543T","T8567A","T8603A","C8741T","G8931A","A8932T","G9015A","C9108T","G9117A"],"RT-p51":["I178M","S379C"],"RT-p66":["I178M","S379C"],"gp120":["N5K","Y145H","K277Q","A291T","G293K","-294I","N323D","-379N","V468I"],"gp41":["R122K","S133N","A268T","C326F","V329I"],"nef":["T50E","E197I"],"p17":["G123R"],"rev":["S86N"],"tat":["A21P","P58T","S61G","S62G"],"vif":["F39L","S116A"],"vpr":["H45Y","A89T"],"vpu":["Y30C","K32R","L82M"]},"labels":{"aa":"RT-p51: I178M, S379C; RT-p66: I178M, S379C; gp120: N5K, Y145H, K277Q, A291T, G293K, -294I, N323D, -379N, V468I; gp41: R122K, S133N, A268T, C326F, V329I; nef: T50E, E197I; p17: G123R; rev: S86N; tat: A21P, P58T, S61G, S62G; vif: F39L, S116A; vpr: H45Y, A89T; vpu: Y30C, K32R, 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rev: S8R, P28F, P77S, S106P; tat: E2D, N7S, T58S, S74F, *87Q; vif: R19K, L39W, K181M, G182D; vpr: Q8H, V37I, H40Q, S41N, A59T, A93S; vpu: Q2T, R32K, K34R"}}}]},{"name":"D_NODE_0000028","node_attrs":{"div":0.08793000000000001,"clade_membership":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["G518A","-6223A","G6818A","T6961-","A6962-","A7001-","T7003-","T7153A","G7315A","G8595T","C8934A"],"gp120":["N158D","G322R","K328N","N378-","T380-"],"nef":["V85L"],"p17":["M61I"]},"labels":{"aa":"gp120: N158D, G322R, K328N, N378-, T380-; nef: V85L; p17: 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H74L"}}},{"name":"AF484498","node_attrs":{"div":0.1336,"accession":"AF484498","clade_membership":{"value":"D"},"country":{"value":"UG"},"date":{"value":1999.0},"Strain_name":{"value":"99UGK09259"},"LANL_subtype":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["A360C","G367A","A380C","A387G","A388G","A425G","A435C","G455A","T495G","A516C","G520A","C525T","C558G","A571T","A585G","C586T","T591C","A592T","A604C","G608A","T635C","A660G","A673G","A702G","C723A","T731C","A742G","C747A","G771C","G829A","C830T","T858C","C890T","G1078A","A1079C","A1089G","G1205A","T1262C","G1301A","G1313A","C1316T","G1355A","T1362C","G1394A","A1404G","T1406C","C1444T","A1450C","A1453G","C1459G","A1461G","C1490T","C1492A","A1536T","A1543G","G1552A","A1664G","C1676T","-1746C","-1747C","-1748T","C1749-","C1750-","C1751-","G1766A","G1769A","G1770C","C1782A","T1785C","A1819G","G1848A","A1861G","A1907G","C1987T","A2007G","A2023G","A2119G","C2195T","T2237A","G2248T","G2363A","T2456C","C2464T","A2470G","T2499C","A2515G","A2524G","C2533T","A2627G","T2694C","A2697C","G2714A","A2722C","G2725A","T2737A","G2902A","C2909G","C2942A","A2995G","A3001G","C3023T","G3154A","T3165G","A3173G","G3238A","A3302G","A3409G","T3412C","T3493G","A3529G","A3574G","A3622G","A3630G","G3643A","T3652C","G3667A","A3674C","G3718A","C3763T","C3826T","T3850C","C3857A","G3859A","T3898C","T3904C","G3989A","A4063G","A4064G","C4069A","A4090C","A4107G","G4112A","C4146A","G4151C","C4162T","C4204T","A4222T","A4225G","G4262A","G4263A","G4354A","G4495A","A4543C","G4573A","A4644G","A4664G","G4673A","T4674C","G4677A","T4679A","C4692A","A4728C","T4772C","A4784G","A4786G","A4838G","A4859G","A4911T","T4943C","A4949G","A4952G","T4967G","T5003C","A5049G","C5053A","T5072G","A5215G","T5221C","A5225G","G5257A","A5282T","A5285C","A5291T","T5296G","C5306T","A5312G","A5369G","C5412T","A5431G","G5432A","T5436C","G5448A","A5491G","A5537T","A5544G","A5547C","A5548G","C5551T","A5555C","G5565A","A5601G","T5626G","T5627G","T5704G","A5748T","G5775A","G5781T","G5794A","T5799C","G5800A","G5805A","G5839A","T5850C","A5861G","G5957A","C5958A","A6030G","A6061G","A6065G","G6076A","C6115T","A6173G","-6175G","-6179A","-6181T","C6183A","T6184G","-6186A","A6188G","-6192C","-6196T","-6198A","-6199T","-6201C","-6202T","-6203A","-6204G","-6205T","-6206A","-6207A","-6208T","-6209G","-6210T","-6211C","-6212A","-6213C","-6214T","-6215A","-6216A","-6217T","-6220A","-6221A","-6222T","-6223A","-6224G","-6225G","A6237T","A6273G","A6288C","A6330C","T6331C","G6403A","C6412T","T6438A","A6442G","A6465C","C6469T","A6488C","G6547A","G6553A","A6571G","C6648T","C6658T","C6673T","C6683A","A6686G","T6688C","A6695G","-6697G","A6703-","C6729A","T6772C","T6794C","A6820C","G6821A","A6836C","A6855G","G6905A","T6932G","G6935A","C6938T","-6947T","G6948A","A6950G","C6951A","-6956A","-6957G","-6958T","-6963A","-6968T","-6969T","-6970A","-6971G","-6972C","-6973T","-6974A","-6975G","-6976T","-6977A","-6978C","-6979A","-6980G","-6981G","-6982G","-6986A","-6987A","-6988T","-6989G","-6990A","-6991C","-6993G","-6994T","-6995A","-6996A","-6997A","-6998G","-6999G","-7000G","-7002A","-7004G","-7005A","-7006C","-7008G","-7009T","C7089A","A7090G","A7101C","G7195A","A7198G","A7269G","G7315A","A7372C","C7429T","G7438A","G7440T","G7517C","C7609T","G7631A","C7645T","T7722C","T7774C","G7846A","A7855G","G7918A","T7921C","C7939T","T8008A","C8048T","A8105G","A8152G","G8156T","A8219G","C8221T","A8228G","G8255A","T8257C","A8273G","G8279T","G8288-","T8289-","C8291-","T8292-","A8297G","G8318A","T8321G","T8322C","A8342G","T8366C","G8368A","T8369G","A8372G","T8374G","C8382T","A8388G","A8409G","C8460T","G8479C","C8480A","A8537G","T8594A","G8666C","C8702T","C8715G","A8717T","A8739G","A8744G","G8772A","A8793G","G8796A","A8809C","T8835C","G8846A","G8870T","G8888A","A8898G","G8924A","G8929A","A8931C","T8932A","G8936A","A8954C","C8967T","T9040C","T9060A","T9068C","T9075C","C9078T"],"INT":["L28I","V72I","T97A","K111R","V113I","T124N","V126L","G163K","E256D"],"RT-p51":["S48T","V90I","D121H","I135T","M178V","I200T","K201T","E207K","F214L","P272A","L283I","M357R","T360A","T403A"],"RT-p66":["S48T","V90I","D121H","I135T","M178V","I200T","K201T","E207K","F214L","P272A","L283I","M357R","T360A","T403A","K512R","K527Q"],"gp120":["S1N","T3A","A35K","E59G","N71D","-106W","-107E","-109K","T110D","N111A","-112T","-113N","K140R","H145S","N158D","N159T","F195Y","D202N","K204T","K212Q","T265V","Q277K","I281V","L289F","T292N","I295V","E309K","Q315E","G322S","D323S","K328Q","K334R","G351R","S360A","G361R","S365Y","-366E","N369-","S370-","T371-","-377S","-381L","-382A","-383S","T385S","P389Q","K416T","M447I","R462K","I463L"],"gp41":["R46M","V72L","S107T","D109N","E110K","N113D","T268A","T306A","I309V","V318I","R324G","V326F","V329-","L330-"],"nef":["S9K","I10M","V11G","P14S","I16V","T23A","H40Y","S46T","I101V","E108D","Q125D","I133V","E144K","E152K","D156A","M168I","C169N","M182I","N186D","R196Q","I197Q","K204N","D205K"],"p17":["S9R","G11E","K18G","S54A","M61L","G62E","L75V","Y79F","T84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L28I, V72I, T97A, K111R, V113I, T124N, V126L, G163K, E256D; RT-p51: S48T, V90I, D121H, I135T, M178V, I200T, K201T, E207K, F214L, P272A, L283I, M357R, T360A, T403A; RT-p66: S48T, V90I, D121H, I135T, M178V, I200T, K201T, E207K, F214L, P272A, L283I, M357R, T360A, T403A, K512R, K527Q; gp120: S1N, T3A, A35K, E59G, N71D, -106W, -107E, -109K, T110D, N111A, -112T, -113N, K140R, H145S, N158D, N159T, F195Y, D202N, K204T, K212Q, T265V, Q277K, I281V, L289F, T292N, I295V, E309K, Q315E, G322S, D323S, K328Q, K334R, G351R, S360A, G361R, S365Y, -366E, N369-, S370-, T371-, -377S, -381L, -382A, -383S, T385S, P389Q, K416T, M447I, R462K, I463L; gp41: R46M, V72L, S107T, D109N, E110K, N113D, T268A, T306A, I309V, V318I, R324G, V326F, V329-, L330-; nef: S9K, I10M, V11G, P14S, I16V, T23A, H40Y, S46T, I101V, E108D, Q125D, I133V, E144K, E152K, D156A, M168I, C169N, M182I, N186D, R196Q, I197Q, K204N, D205K; p17: S9R, G11E, K18G, S54A, M61L, G62E, L75V, Y79F, T84V, Y86L, E90A, T109A, K113R, Q130K; p2: A7V, N9T, 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V","A93T"],"vpu":["Q2P","P3A","R32K","R35G","K38R","-69V","-70E","-71M","-72G","D78P"]},"labels":{"aa":"INT: 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I21T, E29G, K31E; p7: R10K, I12N, E21V; pro: T12A, L19P, L33V, I36M, N37S, D60E, I62V, L63P; rev: D11Q, A15V, R17Q, P28Y, E32R, S61R, S67P, Q101*, S106P, D111A; tat: N7R, R57T, T58A, P59S, Q63P, S74L, R78Q, *87Q; vif: N22H, N48H, H73N, E78D, E117D, T130I, T155A, K158Q, H192Y; vpr: T19I, S28N, I70V, A93T; vpu: Q2P, P3A, R32K, R35G, K38R, -69V, -70E, -71M, -72G, 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D80N"}}},{"name":"AF484505","node_attrs":{"div":0.13349,"accession":"AF484505","clade_membership":{"value":"D"},"country":{"value":"UG"},"date":{"value":1998.0},"Strain_name":{"value":"98UG57131"},"LANL_subtype":{"value":"D"}},"branch_attrs":{"mutations":{"nuc":["T357A","A369G","A458G","A512G","A516T","G518A","G520C","A530G","A537C","A541T","C558G","A604C","G618T","G644A","G650A","A656G","C661A","G667T","A690G","C710T","A742G","C747A","A749G","C767T","T782A","G818A","G821A","T824C","A833G","A920G","A941G","A959G","G976T","A1059T","A1073G","G1077A","G1078A","A1079C","A1089G","C1118T","A1145G","C1211T","T1263A","C1492A","A1498G","T1501C","A1503G","T1511C","A1546G","T1556C","A1588G","C1598T","A1644G","A1664G","G1673A","C1676T","G1687A","A1691G","C1692A","C1706T","-1746T","-1747C","-1748C","C1749T","T1752-","C1753-","T1754-","A1776C","G1781A","C1782T","G1858A","A1867G","A1903C","A1926G","G1988A","C1996T","C2003T","G2027A","A2119G","A2194G","G2241A","A2340G","G2341A","C2393T","C2452T","G2459A","A2461G","T2467C","T2479A","C2584T","G2705A","A2743G","C2749T","A2752G","A2764G","T2770C","A2818G","A2839C","A2845C","G2878A","G2881A","A2919G","A2929C","A2983G","A2989G","G3004A","T3049C","T3052C","A3163G","A3173G","G3238A","T3262C","T3349C","C3376T","T3399C","A3403G","T3433A","T3469C","A3529G","T3550A","A3619C","A3622G","A3651G","A3684G","A3694C","A3805G","A3808C","T3853C","G3884A","T3976C","C4015T","T4075C","G4112A","G4145A","T4147C","G4148A","A4219G","A4243G","A4273G","A4512G","A4552G","A4643C","A4661G","G4677A","A4686C","C4692A","C4730T","A4766G","A4769C","G4779A","A4820C","C4871T","T4912C","A4937C","A5033T","A5049G","C5050A","C5203T","A5215G","A5225G","A5267G","A5272T","A5299G","G5359C","A5370T","A5385C","G5432A","G5433T","T5472C","G5482T","G5543A","C5548A","C5554G","A5564C","C5569T","T5626G","T5627G","G5652A","C5659A","A5708G","T5788C","A5790C","G5805A","T5871G","A5947G","A5955G","A5956T","G5957A","A5995G","C6010T","A6016C","C6026T","A6066C","G6073A","T6085C","T6100C","A6132G","T6154C","C6165A","T6169A","-6175C","-6179A","-6181T","C6183A","-6194G","-6195G","-6196T","-6198G","-6200A","-6201C","-6202C","-6203C","-6204C","-6205T","-6207C","-6209A","-6211C","-6212T","-6213C","-6214T","-6216C","-6217T","G6218A","-6220A","-6221G","-6222A","-6223C","-6224A","-6225T","-6226A","-6227G","-6228G","-6229A","A6234C","C6241T","G6263T","G6267A","T6285C","G6313A","A6318C","G6326A","T6328G","A6329G","A6333G","-6336C","G6392A","C6396A","G6403A","C6427T","A6450G","T6457C","G6458A","T6493C","A6525G","A6574C","C6599A","C6603A","A6604G","A6605G","T6607G","G6611A","T6613A","C6648T","G6664A","A6669C","C6683A","A6685G","T6690C","T6719C","A6723T","T6735A","A6754G","C6797G","G6821A","C6843A","A6844G","A6855G","A6856C","G6871A","G6948A","C6951G","A6952T","-6957T","-6958A","A6959G","A6962G","C6966A","-6969T","A6975G","-6977A","-6978C","A6980G","-6981G","A6989G","-6990A","T6991C","-6993G","-6994T","A7000-","A7001-","T7003-","C7020A","C7045T","G7055A","A7057C","C7078T","T7095C","A7096G","A7102C","T7159A","A7161T","A7164G","T7217C","C7250A","G7270A","G7288A","A7322G","C7373G","A7382T","G7384A","G7395A","T7403A","A7427T","T7488A","A7553C","T7555G","C7574A","A7575C","T7579A","C7584G","A7627C","G7628A","A7629C","T7642G","G7676A","C7699T","A7701C","T7708C","T7722A","A7731G","A7734G","G7735A","C7754A","A7764C","T7775C","T7784G","A7796T","A7858G","G8001A","A8002C","C8048T","C8065T","C8080A","C8103T","A8104G","A8143G","T8176C","T8182C","C8223T","T8256C","G8276A","C8286G","T8287G","A8297G","A8308G","A8314G","A8354G","T8414G","A8438T","C8440T","G8446A","G8447A","G8465-","T8495A","G8540A","A8573G","A8643G","G8666T","T8677C","A8717C","G8798A","T8800C","G8808A","A8827G","T8832C","T8845A","T8847G","G8848C","C8849T","T8887A","A8904C","A8906C","A8909G","A8931G","T8932C","G8968A","G9019T","T9029G","-9033G","A9034-","A9117G","T9122C"],"INT":["E11D","V37I","V113I","A124T","A125T","E246G"],"RT-p51":["R49K","K82R","E122K","E204K","E248D","E250D","K275R","Q278H","T360A","V435A"],"RT-p66":["R49K","K82R","E122K","E204K","E248D","E250D","K275R","Q278H","T360A","V435A","K530R"],"gp120":["N5Q","L6W","K34S","E35T","Q54H","N71T","K93R","T104N","-107V","T110N","T113N","-115S","-116T","-117P","-118T","-119I","-120S","-121T","-122K","-123D","-124I","-125G","-126M","K127T","V137L","R138K","V144A","Q155P","N158K","N159D","N160G","V180I","T181N","K199R","D202N","K224R","E240D","L249I","T250K","N251E","A253T","T265I","N272S","Q277K","I279T","L289F","Y290T","K309E","Q315E","G323N","N327-","K328N","T329K","K334S","S365-","W367-","T371V","-372W","-373I","-374D","-375G","-376K","-377L","-379S","-381G","-382V","-383N","P389Q","G401S","E412A","L414P","K416N","N433D","N434T","N435R","Q436L","L466I"],"gp41":["M7V","L24V","T27S","R31K","L34M","N42Y","I62N","I84L","H91T","T94S","D109T","G113E","D125N","N133T","T140N","E143G","K144R","Q151K","K154T","W161G","T165S","R233N","A267V","T307I","V318A","A325T","A328G","I332V"],"nef":["D24E","A33V","R35Q"],"p1":["I5V"],"p17":["L8I","K12E","M61L","G62A","I68L","Q69L","L75V","E90A","A95S","T109N","S111I","T119A"],"p2":["T8S"],"p24":["Q4R","L6M","R82M","T110S","G116N","S120G","S178T"],"p6":["S3N","P5T","-23S","P24S","S25-","K33Q"],"p7":["P9Q","K11R","I12T","I13V","N27S","K41R"],"pro":["E35D","K43R","L63P","V64I","H69Y","V77I"],"rev":["E10K","D11E","R17Q","I52L","S67F","L73F","L78I","N86D","S99G","S112P"],"tat":["R19N","V36Y","R56Q","P58T","Q60E","Q63P","H65Y"],"vif":["R19S","V31I","K34Q","Q36K","V65I","E78D","I109T","E117D","T155E"],"vpr":["V37M","S41G","T55A","T84V","R85P","T89S","S94R"],"vpu":["L7G","L18I","K34R"]},"labels":{"aa":"INT: E11D, V37I, V113I, A124T, A125T, E246G; RT-p51: R49K, K82R, E122K, E204K, E248D, E250D, K275R, Q278H, T360A, V435A; RT-p66: R49K, K82R, E122K, E204K, E248D, E250D, K275R, Q278H, T360A, V435A, K530R; gp120: N5Q, L6W, K34S, E35T, Q54H, N71T, K93R, T104N, -107V, T110N, T113N, -115S, -116T, -117P, -118T, -119I, -120S, -121T, -122K, -123D, -124I, -125G, -126M, K127T, V137L, R138K, V144A, Q155P, N158K, N159D, N160G, V180I, T181N, K199R, D202N, K224R, E240D, L249I, T250K, N251E, A253T, T265I, N272S, Q277K, I279T, L289F, Y290T, K309E, Q315E, G323N, N327-, K328N, T329K, K334S, S365-, W367-, T371V, -372W, -373I, -374D, -375G, -376K, -377L, -379S, -381G, -382V, -383N, P389Q, G401S, E412A, L414P, K416N, N433D, N434T, N435R, Q436L, L466I; gp41: M7V, L24V, T27S, R31K, L34M, N42Y, I62N, I84L, H91T, T94S, D109T, G113E, D125N, N133T, T140N, E143G, K144R, Q151K, K154T, W161G, T165S, R233N, A267V, T307I, V318A, A325T, A328G, I332V; nef: D24E, A33V, R35Q; p1: I5V; p17: L8I, K12E, M61L, G62A, I68L, Q69L, L75V, E90A, A95S, T109N, S111I, T119A; p2: T8S; p24: Q4R, L6M, R82M, T110S, G116N, S120G, S178T; p6: S3N, P5T, -23S, P24S, S25-, K33Q; p7: P9Q, K11R, I12T, I13V, N27S, K41R; pro: E35D, K43R, L63P, V64I, H69Y, V77I; rev: E10K, D11E, R17Q, I52L, S67F, L73F, L78I, N86D, S99G, S112P; tat: R19N, V36Y, R56Q, P58T, Q60E, Q63P, H65Y; vif: R19S, V31I, K34Q, Q36K, V65I, E78D, I109T, E117D, T155E; vpr: V37M, S41G, T55A, T84V, R85P, T89S, S94R; vpu: L7G, L18I, 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T119A, A120-; p2: A7L, A10-, A12S; p24: L6M, I15L, S16T, A31N, Q50T, L83T, G116A, A204S, S225G; p6: T8S, S14I, I21M, -23L, S25-, L35T, Y36C; p7: R10K, K11R, I12N; pro: M36I, K45R; rev: D7V, E10D, P28Y, Q36K, R80K, N86S, T91D, H100N, I102V, V109I, T114A, K115E, E116K; tat: N7S, P21A, K29Q, R53S, P58S, P59S, G61S, H65N, I69V, K71E, S74L, P81S, T82K; vif: K22N, Q36K, P47T, E78D, T155K, R167K, R184K, T188I, M189I; vpr: E17Q, S28A, V37T, H45Y, E48A, R85L, Q86L, S96P; vpu: V5Q, A11G, V13I, T24S, F27Y, C30Y, L33I, K34R, R35K, A50E, -69Q, H73-, V79I, 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L50M, D232E; RT-p51: K20R, T39D, D121C, P243S, E248D, T386I, E399D, V435L; RT-p66: K20R, T39D, D121C, P243S, E248D, T386I, E399D, V435L, V467I, L469I, T470A, K527N, N554S; gp120: S1R, T3I, N5E, L6G, I40V, I57V, E59K, K69E, I80V, D105N, -106A, -107K, N108F, T112A, -113N, -114S, -115T, -116G, -117N, -118T, -119T, -120E, -121S, -122P, -123L, -124T; gp41: Q32E, K77R, S107T, L108I, D109E, E110Y, N113E, E119Q, L130V, E137K, T140V, Q147K, Q151E, S163D, T165S, L193I, L210F, I264L, I293S, F304L, D305N, T306A, A310T, V326A, N331H, T334R, A343V; nef: I10L, I16V, I20M, R21K, E28D, A33V, E38D, H40Y, Q50H, Q104T, P150T, P176L; p17: E15D, R20H, S26R, K28R, F44Y, K58R, M61L, Q65E, I68V, E74G, V94I, T109N; p2: T8S, A10N, A11T; p24: I27V, A31G, S33N, H87Q, V91A, S120N, T210S; p6: I21T, A39T, K42R; rev: P28L, G56S, N82T, S103P, V104L, A108T, D111E; tat: N7K, R19Q, G62S, Q63E; vif: R19N, H27Y, Y30H, K34R, H73Q, T130A, Q136P, K141Q, T155S, K160R; vpr: V37P, F72Y, T89M; vpu: Q2P, 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120G","-121M","K140R","V144E","K150R","D157-","N158-","N159-","N160-","S162-","A172T","T181N","I243V","I244V","T292N","N293R","K309D","K319R","F325Y","K334Q","S336P","S365-","W367-","N369-","S370-","T371-","N378-","T380-","M398L","I414V","K416S","T427L","G431-","N433-","N434-","N435-","S436-","N437-","R462E","I463L"],"gp41":["I2V","S101D","L108I","D109E","E119Q","G129E","I135L","E137T","Q151K","K154T","S163D","N166R","V187I","L210F","I264L","V271L","E280K","T306A","V326F","I329V","N331H"],"nef":["G3N","S9-","I10-","V11-","G12-","R22-","T23-"],"p1":["K10S"],"p17":["R20Q","S26K","K28R","A67S","I68L","K76R","E90Q","A95T","A118-"],"p24":["A14S","I15L","Q50T","K199R","P207A","A208G"],"p6":["F15L","G16R","I21T","K33S","L38I","A39T","K42R"],"p7":["N5K","K7Q","P9Q","R10K","I12N","I24T","K34R"],"pro":["N37D","D60E","V77I","I93L"],"rev":["L18I","P28L","I55L","N82T","N84D","C89L","T91A","G98E","I102V","T114A"],"tat":["E2D","V36A","P58S","A64D","H65N","P68T"],"vif":["K22N","L39V","D45E","P47T","R93G","G101D","Q105H","I109L","T130F","N140Y","I154T","V166I","G182D","S186N"],"vpr":["D7N","L42I","T84L","T89L","A93S"],"vpu":["P3L","L4V","V5-","V13I","E56D","V65A","D78N","V79I"]},"labels":{"aa":"INT: L45M, G106A, V112I, V126L, N222H, I234V; RT-p51: T107S, Y121D, D123N, I142V, K173R, E177D, I200M, P272A, C282L, V293I, P294A, E312N, Y346H, M357R, C379S, Q394T, E399D, T400A, V435E; RT-p66: T107S, Y121D, D123N, I142V, K173R, E177D, I200M, P272A, C282L, V293I, P294A, E312N, Y346H, M357R, C379S, Q394T, E399D, T400A, V435E, L452-; gp120: S1R, V2A, L6G, K57N, N102D, N108-, T110-, -113A, -114N, -115N, -116V, -117T, -118R, -119I, -120G, -121M, K140R, V144E, K150R, D157-, N158-, N159-, N160-, S162-, A172T, T181N, I243V, I244V, T292N, N293R, K309D, K319R, F325Y, K334Q, S336P, S365-, W367-, N369-, S370-, T371-, N378-, T380-, M398L, I414V, K416S, T427L, G431-, N433-, N434-, N435-, S436-, N437-, R462E, I463L; gp41: I2V, S101D, L108I, D109E, E119Q, G129E, I135L, E137T, Q151K, K154T, S163D, N166R, V187I, L210F, I264L, V271L, E280K, T306A, V326F, I329V, N331H; nef: G3N, S9-, I10-, V11-, G12-, R22-, T23-; p1: K10S; p17: R20Q, S26K, K28R, A67S, I68L, K76R, E90Q, A95T, A118-; p24: A14S, I15L, Q50T, K199R, P207A, A208G; p6: F15L, G16R, I21T, K33S, L38I, A39T, K42R; p7: N5K, K7Q, P9Q, R10K, I12N, I24T, K34R; pro: N37D, D60E, V77I, I93L; rev: L18I, P28L, I55L, N82T, N84D, C89L, T91A, G98E, I102V, T114A; tat: E2D, V36A, P58S, A64D, H65N, P68T; vif: K22N, L39V, D45E, P47T, R93G, G101D, Q105H, I109L, T130F, N140Y, I154T, V166I, G182D, S186N; vpr: D7N, L42I, T84L, T89L, A93S; vpu: P3L, L4V, V5-, V13I, E56D, V65A, D78N, 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N81I"}}},{"name":"MN153485","node_attrs":{"div":0.12229,"accession":"MN153485","clade_membership":{"value":"F2"},"country":{"value":"CM"},"date":{"value":2008.0},"Strain_name":{"value":"08CMBDSH24"},"LANL_subtype":{"value":"F2"}},"branch_attrs":{"mutations":{"nuc":["A256-","A263G","-305C","T309-","G378T","C379T","A390G","A399C","A412G","A419G","C435A","A524G","C525T","T549A","A563G","A605G","G607A","A615G","G619A","C648G","A665G","A676G","G692A","A700G","T728C","G752A","G762A","A764G","G771A","C772A","T789C","G821A","T852A","A878T","A1002C","T1003A","C1008G","T1040C","A1070G","C1094T","C1169T","T1182C","C1187T","A1205G","C1211T","C1261G","T1262C","A1271T","G1278A","G1279A","C1292T","A1339G","A1361C","G1394A","C1406T","A1446C","C1447A","-1458A","-1459C","A1476G","G1495A","T1501C","C1514T","A1543G","C1571A","A1587C","A1643G","G1661A","G1673A","T1676C","A1701T","G1731C","A1733G","-1746A","-1747C","-1748T","T1752C","C1755T","T1785C","A1786T","T1787C","C1825T","G1841A","T1864G","A1918G","G1942A","A1982G","A2005G","G2027A","G2074A","A2154G","C2206A","A2212T","T2356C","G2392A","G2417A","T2494C","C2500A","A2545G","G2567A","T2607A","T2608C","A2627T","A2637G","C2638T","A2645G","G2647A","A2674G","G2683A","G2692A","C2756T","C2845T","T2863C","C2942A","G2947A","A2956G","T2968C","C2978A","A2992G","C3013T","G3016A","C3023T","A3061G","T3067C","A3080G","G3085A","T3097C","T3112C","C3140T","A3229G","G3230A","A3249G","C3318T","T3399C","G3438A","G3442A","G3467A","G3494A","A3529G","T3541C","A3562G","T3644A","A3684G","A3703G","T3742C","C3763T","G3775A","A3816G","T3844C","C3940T","T3946C","A3988G","A4064G","C4069G","C4258T","A4315G","G4354A","G4388T","C4396T","T4405C","T4412C","A4422G","T4455A","C4471T","A4539G","G4549A","A4558C","C4665T","T4676C","G4677C","T4678G","G4689A","A4693G","A4697G","T4701A","A4721C","C4754T","G4770T","A4782G","T4799G","G4871T","G4887A","C4914T","T4932G","G4963A","T4967G","A5015C","A5056G","G5069A","G5075T","A5085C","T5147C","T5182C","G5215A","C5221T","G5269A","A5299G","C5303T","A5308C","C5314T","T5357C","C5412A","A5448C","T5515C","A5594G","G5599A","G5610A","C5614A","T5618A","G5619T","C5620A","G5629A","T5630C","A5632G","G5635A","T5642A","C5651T","C5653A","T5657C","A5668G","T5670G","T5684C","A5703G","C5704T","T5705G","T5708C","A5717G","A5728C","G5729A","G5737C","A5787T","T5788G","T5789C","G5790A","C5792A","A5793G","C5795A","C5797T","T5799G","G5801C","G5802A","G5806C","G5808T","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","C5834A","A5842G","A5846T","C5851T","T5866A","A5881G","A5914T","A5918G","G5954A","A5957C","T5964C","T5968C","T5984C","A6009G","A6020G","G6028A","A6044T","T6109A","C6110G","G6167-","A6168-","T6169-","G6170-","T6171-","T6172-","A6182C","C6183T","T6184C","A6185T","T6190C","A6191G","T6193G","T6196C","T6199C","-6203C","-6204T","-6205G","-6209G","-6210A","G6211A","A6212C","T6213A","A6214G","-6215G","-6216A","-6217G","-6220G","A6222T","G6224-","G6225-","G6226-","G6227-","A6228-","A6229-","A6232G","A6251G","C6256T","G6262A","A6263G","T6264C","G6267T","G6277A","T6287C","T6289G","G6303A","T6322G","A6327C","G6333A","A6335G","A6340T","A6354G","T6361C","C6375A","T6403G","T6445C","A6462C","A6464G","G6481A","C6482A","A6489G","G6490A","A6505C","A6526G","G6532A","T6582A","A6639C","A6648C","A6654G","C6673T","T6676C","G6687A","-6697A","-6698G","-6699G","-6700T","-6701A","-6702T","C6708G","T6722C","T6724G","A6752C","A6771G","C6777A","T6780A","T6787G","G6788A","C6790T","A6800C","A6810G","A6822G","A6825T","T6827C","-6829T","-6833A","-6834A","T6838A","A6839T","A6840C","A6844C","C6849A","C6850A","T6860G","C6874T","G6894T","T6895G","A6907G","C6933G","A6934T","A6947C","-6948A","A6949C","-6953A","-6954T","-6955A","-6956G","-6957C","-6958T","-6962G","-6963A","-6964A","-6979A","-6980G","-6981G","-6982A","-6983A","A6986G","T6988C","-6990A","-6991T","-6999G","-7002C","-7005A","-7006C","A7032G","A7037T","C7045A","A7063G","G7065A","G7088A","C7089G","T7090C","A7095G","A7096G","A7113G","C7127T","C7134T","A7151G","A7152G","G7162C","T7165G","-7168G","-7170T","C7172A","A7183G","G7186A","G7231A","G7256A","A7265T","G7281C","A7297C","A7313G","A7322G","T7325C","G7366A","T7386C","A7420G","C7429T","A7532C","A7590G","T7591A","T7604G","G7631A","A7632C","C7642A","A7669G","G7790A","A7820T","G7831A","G7868A","A7883G","T7888A","G7915A","A7918G","G7942A","A7953G","G7962A","C7988A","A7989G","A7996C","G8019A","A8032G","C8033A","T8034G","C8037T","A8050C","C8065T","A8079T","C8080A","C8119G","-8120A","-8121G","-8122G","G8125A","G8126C","G8127T","A8128G","A8132G","G8133C","C8146A","C8147A","T8155C","C8156T","G8168C","C8169T","C8171A","C8220G","A8228G","G8276C","A8288T","C8291A","G8317A","T8348A","G8349A","G8350A","A8352C","T8366A","G8368A","T8369A","A8370T","T8374C","G8376A","G8377A","A8402G","T8414C","G8441T","T8451C","A8469G","G8488C","G8489A","C8500G","T8505A","G8507A","A8525C","A8564G","A8584T","C8676T","C8741T","T8745C","A8762C","G8787C","A8801G","C8828T","T8835C","G8876A","A8885G","A8893G","C8913T","G8914-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K14R, T97A, A205S, Q216R, F227Y, N255S; RT-p51: K20R, V108I, A158T, F171Y, I178L, Y181C, M184V, H221Y, L283I, L295M, I329V, G379S, K385R, A408V, V435A; RT-p66: K20R, V108I, A158T, F171Y, I178L, Y181C, M184V, H221Y, L283I, L295M, I329V, G379S, K385R, A408V, V435A, R448K, V458I, V467I, L517I, K530R; gp120: T22A, E34K, K35Q, V37A, Y44H, N52S, I56V, N64Y, D85E, Q86E, -107L, N108Y, T110E, -113T, -114L, -115T, -116E, -117Q, -118E, -119E, -120I, -121M, E122-, G124-, E125-, I126-, I133V, I137A, R138I, Y145Q, R150K, I153V, I156M, N158T, S159N, N161D, N167S, T174K, D183E, K203T, N204E, L210I, K212R, I243K, R262T, E265A, N267S, S278N, H280R, -282G, -283I, P285R, Y290Q, E294A, K300Q, Y302H, N306S, T308K, L309Q, N311K, D312N, K316Q, -319S, E320L, K322-, -327N, N328K, K329S, T332K, N334K, S336A, S347M, R351G, T365H, -367I, -368A, -370E, -372G, -373T, -374D, -375N, -377T, -379N, K393R, I395F, N397K, R404Q, A412S, K414R, N420S, T427I, N433G, -436D, L440I, V468I, T471S, Q476P, E481D; gp41: M4V, M7V, F8L, V28A, K77Q, N96R, S101A, E110T, D113E, R133S, I173L, M176I, A189T, I194V, N195K, D217G, G220E, Q229R, K231N, S239N, L244S, A245V, H259L, D272E, K276Q, G277A, L282I, A289L, Q290K, T306S, I309V, A325L, I329F, L330I; nef: G3N, K4Q, S9K, I10L, V11A, G12K, I20M, I43V, R49A, L55I, Q61H, Y81F, S149P, K184R, R191Y, R192-, H193-, I194-, A195-, R196-, E197-, R198-, H199-, P200-, E201-, F202-, Y203-, K204-, D205-; p17: A15L, I19V, K26R, L34I, S72T, V82I, R91K, I94V, R95K, Q105E, K114R, K122R; p2: T8Q, N9H, -12T; p24: V11M, A14N, S41T, I91H, P93A, A177G, E180D, G183N, K203R; p6: T8S, S14P, G16R, F17-, G18-, E19-, I21E, T22I, P23T, S24P, -26S, Y36P, P49L; p7: S4G, R10K, I12T, K26R, K41Q; pro: V15I, I62V, L63P, V77I; rev: E32K, A47E, T62E, T68P, L73F, L78I, Q91E, E94A, R95S, P100N, S103L, H107P, A108E; tat: N12K, K24N, Y47H, R78Q, T82A, E85K; vif: H27Y, V31R, A35T, K36R, G37R, F39I, E45D, D62S, S63K, I66V, R95S, G101S, H110Y, S116A, G126E, H127Q, K157R, L163F, R167Q; vpr: Y15H; vpu: M1I, L3I, 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E11D, K14R, S24N, V32I, L45Q, M50V, P119S, T218I; RT-p51: T35S, D123E, I135T, T139A, E177D, I195L, E207A, K211A, E297G, V317A, A322T, S379G, E404D; RT-p66: T35S, D123E, I135T, T139A, E177D, I195L, E207A, K211A, E297G, V317A, S322T, S379G, E404D, S491P, Q527R; gp120: A3E, D4N, V40I, N52S, L58M, E59G, N64T, K69E, -106C, K107V, N108R, -109N, -110K, -111N, -112T, -113T, -115S, -116D, -117L, -118R, -119E, -120D, -121P, Q123A, G124-, A125-, M133A, N138T, K141R, K142Q, H145Y, R150K, P155Q, N157D, N159R, N160T, N161Y, S162R, L165I, I166L, T172V, I173V, V180I, K204T, I243V, E262K, S263T, P271H, K277E, H280R, L281I, G307R, N311R, K312D, E315D, T330-, N334Q, S335P, I347M, -367G, -370D, -371T, -372I, -373S, -374N, -382G, -383T, -384D, T385P, T387I, A412K, N414S, G431E, N432G, N433S, N435S, D436E, S437N, D446N, R448K, E464K, V468I, K479T, K482R; gp41: M7W, V28A, L91V, N96R, S102T, K106R, E110N, D113N, M115L, M118I, G125D, Q126R, Y127H, Q137D, N140K, M176I, G180S, V187A, S205P, A267V, L330F; nef: K4M, A15K, R22Q, A49V, A50T, E63D, V85I, I101V, Y120F, Y135F, D149E, E176D, K184Q, S188K, H199C, E201D, Q204R; p17: L8F, E17D, G24R, K28H, S72T, V82I, I104M, A115T, A118V, G123S, N124-, S125-, S126-; p2: N9R, A12T, V13I; p24: S149C, A194S, S225G; p6: -26R, K27-, D32S, A39D, K42R; p7: R10K, R41K; pro: I15V, K45R, L63T, I93L; rev: D7E, A15T, P31S, D61G, I102V; tat: I39V, Q60K, G61D, I67N, P68S, P77L; vif: M29I, K36Q, F39V, Y44F, S46N, I51V, E61G, S95N, A123V, R128K, T159R, N186Y; vpr: L22I, T49S, H77Q, S93P; vpu: D3N, L4F, L5I, V7I, A8V, I9T, F12Y, L16I, L33V, K44E, R47I, M71V"}}},{"name":"AF076998","node_attrs":{"div":0.10416,"accession":"AF076998","clade_membership":{"value":"CRF05_DF"},"country":{"value":"BE"},"date":{"value":1993.0},"Strain_name":{"value":"VI961"},"LANL_subtype":{"value":"CRF05_DF"}},"branch_attrs":{"mutations":{"nuc":["T200C","T305C","T308G","T467C","C471A","G607A","A673G","A674T","G677A","G703A","A711G","A715C","A730T","G821A","T852A","C893T","T978G","T988C","G989A","T992G","G1019A","G1077A","T1262C","G1271T","G1388A","A1449G","A1455C","-1460A","A1461G","G1498A","A1567G","C1615T","A1620G","A1644G","C1651T","G1664A","T1754G","A1781G","C1782A","T1783A","C1811T","T1873C","C1903A","A1906G","T1954C","T1996C","G2005T","A2012G","A2215C","A2304G","G2321A","A2329G","G2343A","G2456C","A2459G","T2464C","G2509A","A2519T","A2629G","G2693A","A2713G","A2755G","A2818G","G2837A","A2884G","G2951A","G3171A","G3398A","A3400G","A3490G","A3511C","A3571G","C3653A","A3671G","G3775A","A3781G","G3825A","T3962C","T4039C","C4181A","T4234G","A4370G","G4388T","T4477G","T4655C","G4689A","G4696C","G4766A","A4814G","G4829A","G4878A","A5036G","A5122G","A5143G","A5159G","C5160T","G5226A","T5275C","C5280T","T5286C","T5313C","T5391C","T5452C","C5536T","A5576T","T5688C","A5689T","A5699G","G5839A","A6020T","T6024C","C6122T","-6170G","-6174C","T6187C","G6188A","C6190T","A6192G","T6193C","-6195A","C6196G","C6201T","C6205T","-6207C","C6222A","T6242A","G6277T","C6278A","A6282G","C6317T","A6327G","T6331C","A6333G","T6334A","C6337A","A6338G","G6339A","-6340A","C6396G","T6457A","A6465G","G6550A","C6562T","C6603T","A6618C","A6693C","G6725A","T6733G","A6809G","T6815C","A6819G","A6820G","T6827A","C6829A","-6830G","-6831G","-6833C","A6848G","T6863G","-6947G","-6948T","-6972G","-6974A","-6975C","-6976C","-6977C","-6978A","-6979A","-7002A","C7096T","G7152T","A7155C","C7156T","-7164C","-7165A","A7289C","A7313G","T7325C","C7328A","A7375G","T7444C","A7505C","A7533G","G7534A","T7555C","C7642A","G7658C","A7679C","C7742A","A7747C","G7790A","A7791G","C7801T","G7868A","A7880G","T7921C","C7938G","C7960A","A8005C","A8019C","C8026G","G8030A","A8188G","G8365A","T8369G","A8409G","C8411A","C8412G","C8413G","T8414A","C8415G","C8499G","C8552T","A8584T","T8585C","G8588A","C8590G","G8595T","A8636T","G8664A","T8666G","C8688A","T8747C","C8828A","A8847C","G8848A","C8873T","A8874G","A8887G","A8904T","A8905C","G8917A","-8971T","C8975T","G9015A","G9033-","T9041C"],"INT":["S17N"],"RT-p51":["E40D","K70R","D76N","R83K","D121H","K122E","I142F","I178M","A200T","D248N","A286T","D335E","S359N","V435M"],"RT-p66":["E40D","K70R","D76N","R83K","D121H","K122E","I142F","I178M","A200T","D248N","A286T","S322A","D335E","S359N","V435M","Q520K","I526V"],"gp120":["I56L","V57A","E78A","P90S","-106L","N108E","S114-","S130T","M133I","N138K","K141N","K143R","P155S","N158S","N159S","N160R","N161K","S162E","S181C","N201K","K204R","N241S","S250L","N255T","H280P","A291T","-318K","-319E","K322R","-323A","I332V","S337A","S365V","N369-","N433I","N434T","S437T","K479Q"],"gp41":["L4V","M7L","F8L","L9I","I24M","K77R","N96S","Y108Q","D113E","E119Q","Q147K","E148D","D163S","A189T","I193V","A212G","N239T","F241L","A243T"],"nef":["S8N","S9R","E28G","G29A","P53A","Y81F","A83G","V85L","E98D","D108K","H116N","N162K","S169H","R178G","K182R","R192K","H199R"],"p1":["I5V","P7L"],"p17":["L46I","S62A","R91K","K113S","G123K","S126G","Q127P","Y132F"],"p2":["N9G","T11P"],"p24":["S41T","L83V","V86A","H87Q","M96I","A116T","E180D"],"p6":["L35K"],"p7":["R11K","K34R","T50I","R52G"],"pro":["L5F","D35E","I36M","Q69H","I72V"],"rev":["I21F","S30R","S53R","E57D","L60V","T114A"],"tat":["Y26H","T54S","P77A","P84Q"],"vif":["A35T","G37A","V98I","T159I","K179R","N186C","H192Y"],"vpr":["T19V","G41D","A59V","I61T","I70T","S96P"],"vpu":["V10A","I28L","K31R","D78N"]},"labels":{"aa":"INT: S17N; RT-p51: E40D, K70R, D76N, R83K, D121H, K122E, I142F, I178M, A200T, D248N, A286T, D335E, S359N, V435M; RT-p66: E40D, K70R, D76N, R83K, D121H, K122E, I142F, I178M, A200T, D248N, A286T, S322A, D335E, S359N, V435M, Q520K, I526V; gp120: I56L, V57A, E78A, P90S, -106L, N108E, S114-, S130T, M133I, N138K, K141N, K143R, P155S, N158S, N159S, N160R, N161K, S162E, S181C, N201K, K204R, N241S, S250L, N255T, H280P, A291T, -318K, -319E, K322R, -323A, I332V, S337A, S365V, N369-, N433I, N434T, S437T, K479Q; gp41: L4V, M7L, F8L, L9I, I24M, K77R, N96S, Y108Q, D113E, E119Q, Q147K, E148D, D163S, A189T, I193V, A212G, N239T, F241L, A243T; nef: S8N, S9R, E28G, G29A, P53A, Y81F, A83G, V85L, E98D, D108K, H116N, N162K, S169H, R178G, K182R, R192K, H199R; p1: I5V, P7L; p17: L46I, S62A, R91K, K113S, G123K, S126G, Q127P, Y132F; p2: N9G, T11P; p24: S41T, L83V, V86A, H87Q, M96I, A116T, E180D; p6: L35K; p7: R11K, K34R, T50I, R52G; pro: L5F, D35E, I36M, Q69H, I72V; rev: I21F, S30R, S53R, E57D, L60V, T114A; tat: Y26H, T54S, P77A, P84Q; vif: A35T, G37A, V98I, T159I, K179R, N186C, H192Y; vpr: T19V, G41D, A59V, I61T, I70T, S96P; vpu: V10A, I28L, K31R, D78N"}}}]}]},{"name":"NODE_0000078","node_attrs":{"div":0.0443,"clade_membership":{"value":"other"}},"branch_attrs":{"mutations":{"nuc":["A508G","G607A","G977A","A1022G","A1046T","G1077C","C1078A","A1109G","A1133C","T1244C","A1412G","C1478T","G1508A","C1514T","C1517T","G1968A","C1979A","A1981C","A2005C","A2023G","T2206A","A2362G","A2498G","A2626C","A2956G","C3013T","A3099G","A3217G","C3223T","C3225T","A3259G","A3276T","A3283G","A3292T","T3355C","T3368C","C3376T","T3399C","T3412C","A3755G","G3825A","C4021A","T4110C","G5086A","G5236A","T5382G","A5444C","C6160T","A6478G","C6548T","A6691-","C6721T","T6733A","A6748C","A6809-","T6849A","-7006C","G7056A","A7183G","G7190A","G7197A","C7692A","G7765A","T8883C","A8885G"],"INT":["S17N"],"RT-p51":["I135V","E177D","D335G","E399D","V435A"],"RT-p66":["I135V","E177D","D335G","T377L","Q394L","E399D","V435A","S554A"],"gp120":["I56V","E78T","D105N","K142Q","-323S","N328-","I332K","T345M","S365D","I396V","D446N","R448K"],"gp41":["Y108Q","T130E","L209H"],"nef":["S188R"],"p17":["K58R","R91K"],"p24":["A116Q"],"pro":["R57K","Q61N"],"tat":["N23T"],"vif":["R167K"],"vpr":["S93A"],"vpu":["V7I"]},"labels":{"aa":"INT: S17N; RT-p51: I135V, E177D, D335G, E399D, V435A; RT-p66: I135V, E177D, D335G, T377L, Q394L, E399D, V435A, S554A; gp120: I56V, E78T, D105N, K142Q, -323S, N328-, I332K, T345M, S365D, I396V, D446N, R448K; gp41: Y108Q, T130E, L209H; nef: S188R; p17: K58R, R91K; p24: A116Q; pro: R57K, Q61N; tat: N23T; vif: R167K; vpr: S93A; vpu: V7I"}},"children":[{"name":"NODE_0000079","node_attrs":{"div":0.06149,"clade_membership":{"value":"other"}},"branch_attrs":{"mutations":{"nuc":["G10A","C23T","G278A","A304-","A404G","C426A","A428G","A474G","T486C","A507C","C510A","A557G","G595A","A609G","A620G","T641G","A645C","A669C","A689G","C700A","A705-","A706-","C707-","A708-","C710-","G712-","A715-","C722T","G740A","G755A","C773T","A806G","A809G","C827T","A869G","C875T","C902T","A1277G","A1278G","A1279G","-1452A","G1476A","A1670C","G1673A","A2038G","A2131G","G2224A","A2311G","G2693A","G3431T","T3445C","T3449A","T3450A","A3511C","A3524G","G3770A","A3901G","T4024C","A4084G","T4147C","A4246G","A4255G","G4388T","T4444C","G4695A","A4717T","T4799G","C4820T","T4827C","A4860G","A4865G","C4871G","G4878A","A4904G","T4907C","C4911A","G4913A","T4976C","G4986A","T4988C","A5049G","A5051T","A5057G","T5062C","A5069G","T5084C","C5095T","G5099A","T5102C","A5121G","A5269G","A5290G","T5293A","C5294T","T5314C","C5371T","C5384T","C5398T","G5403T","T5424C","A5432C","G5433A","G5437C","A5461C","A5462G","C5479T","A5481C","G5482T","T5483G","T5484G","T5492C","A5499G","A5544C","C5567T","T5568A","C5614G","G5626A","C5630G","A5631G","-5806A","A6050G","G6086A","A6168-","-6204G","A6279T","A6336G","A6801G","A6810C","A6820G","A7025C","A7152G","-7164C","A7977G","A8032T","A8076G","C8095A","C8120A","T8121G","T8122G","C8123G","T8124G","G8126C","G8127T","A8128G","C8129A","C8131G","T8159G","T8169C","A8288G","C8294A","A8486T","G8487A","C8488G","C8640T","G8882A","A8909G","A8952C","-8971A","G9007A","A9009-","T9014-","T9019A"],"INT":["T124A","A205S"],"RT-p51":["A200T","Q394L"],"RT-p66":["A200T","A446S","L452K","T477A","V559I"],"gp120":["N66D","Q142L","Q316R","N369-","R472K"],"gp41":["D129N","F206L","E225G","H258R","E272D","G275L","W286G","I329V","H331N"],"nef":["A49R","K204Q"],"p17":["L31M","N47D","Q59K","C87Y","I92V","I104L","K112Q","T122K","N124-","S125-","S126-","Q127-"],"p24":["N183G"],"rev":["T62S","T91Q","S92G","G93T","T94E","Q95E","V104G"],"tat":["P3L","E9D","K19T","A21P","K29R","Q35Y","V36W","I39T"],"vif":["G37R","Y44F","R92G","S95R","V98I","L109I","V129I","T155A","T170V","K179E"],"vpr":["A89V"],"vpu":["V10A","-71M"]},"labels":{"aa":"INT: 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-71M"}},"children":[{"name":"NODE_0000080","node_attrs":{"div":0.06826,"clade_membership":{"value":"other"}},"branch_attrs":{"mutations":{"nuc":["A595T","A810G","C897T","G998A","-1455A","-1457T","A1461G","G1687A","A1691G","T3492C","T3544G","C3674A","G3766A","A3802G","A3805G","C3940T","A4021G","A4025C","G4060A","G4131C","T4207C","G4262A","G4354A","A4407G","C4428T","A4737G","T4793C","G4969A","C5478T","G5631C","G5861-","C5862-","A5863-","C6004T","C6010T","A6130G","-6207C","-6212A","-6214G","-6215G","-6216A","-6217A","A6275C","T6343C","T6688-","C6692-","A6714G","T6793A","C6800A","G6814A","C6824T","-7001A","-7005A","A7060G","G7160A","C7170T","A7691G","G7947A","C8494A","G8531A","T8789C"],"INT":["I84L","K211R","T218I"],"RT-p66":["V466A","H483Q"],"gp120":["A3-","D4E","K141Q","H280-","Q287R","K329-","-436N","T439I"],"gp41":["G215E"],"nef":["T51N"],"p17":["Y87F"],"p2":["-12V"],"p24":["I27V"],"p6":["S3N"],"tat":["L74I","D80N"],"vif":["I51V","R128K"],"vpr":["G41S"]},"labels":{"aa":"INT: I84L, 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R20K, V72I, I101L, T119A, K156N, R211K, I218T; RT-p51: D6N, M41L, E44D, V60I, D67N, K70R, L74V, L100I, K103N, V118I, C162Y, A173T, D177N, M184V, E203K, H208Y, L210W, T215Y, D218E, K219E, L228H, Q242H, N348I, L377T, D399E; RT-p66: D6N, M41L, E44D, V60I, D67N, K70R, L74V, L100I, K103N, V118I, C162Y, A173T, D177N, M184V, E203K, H208Y, L210W, T215Y, D218E, K219E, L228H, Q242H, N348I, L377T, D399E, N447S, V467I, S468T, E529D, V531I; gp120: T21N, A32S, V56E, G59V, N102D, T104I, N105G, A106V, -109T, -110T, -111N, -112A, -114T, E122L, P123N, T135A, K143Q, Y149S, L151F, I153L, I156L, N159S, N160S, S162H, N167H, N169D, D183E, E239K, I243V, S278G, -280R, Y290L, G293E, D294K, K312N, T313A, L314I, E315K, S323V, -326P, -329K, K332N, N334T, I343V, D365N, -378N, -379I, -381Q, -382S, -383K, T385I, I395V, M398L, A412E, N414I, N420S, N433G, K472G; gp41: A14T, I24M, V69L, N96A, D109K, D113E, N129K, R133N, E136A, N160S, L206F, G221E, R231K, D232G, V235I, A243S, R258H, L284F, A289T, Q290L, S293I, E313G, 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N80D"}}},{"name":"HM026458","node_attrs":{"div":0.11573,"accession":"HM026458","clade_membership":{"value":"CRF46_BF1"},"country":{"value":"BR"},"date":{"value":2007.0},"Strain_name":{"value":"07BR_FPS783"},"LANL_subtype":{"value":"CRF46_BF1"}},"branch_attrs":{"mutations":{"nuc":["A101T","A161C","T200G","G317A","G474A","C477T","T479C","A510C","G519A","C520A","C525T","G542A","G562A","A569G","A576G","C662T","C691A","A697G","G743A","C767T","G771C","T978G","A998G","T1046A","T1182C","A1193G","T1296C","C1316T","G1346A","G1404A","C1456A","C1598T","A1673G","A1772G","C1775G","C1826T","A2122C","C2211A","G2407A","C2527T","A2592G","G2602T","A2693G","C2701T","A2715C","A2794G","A2818G","C2848T","T3045C","C3067A","A3088G","G3250A","T3262C","G3264A","T3299A","G3300C","G3307A","C3346A","A3447G","C3492T","T3495C","G3524T","A3760G","A3766G","T3856C","G3891A","A3931T","G3952A","G3997A","C4025A","A4063C","C4079T","A4178G","C4181A","G4183T","C4204T","T4240C","G4252A","G4263A","A4285G","G4353A","A4354C","C4357T","A4577C","G4583C","T4585C","C4674T","T4717A","T4718C","G4737A","A4804T","T4910C","C4965G","A4969G","G4971A","A4993C","A5007C","T5018C","A5159G","C5160T","A5246G","A5285G","A5372G","C5383A","T5398C","G5427A","G5463A","T5479C","C5481A","C5487T","T5515C","T5567A","A5568C","G5575A","G5614T","T5616C","G5619A","T5620G","A5622G","G5623A","A5626-","T5627-","A5629G","G5630C","C5631T","A5632-","T5648C","C5678T","T5684C","C5704T","G5712A","A5842G","A5914C","T5923C","C5929T","A5958G","A5965C","C5989T","A6008G","A6030G","T6091C","C6115T","C6116T","-6167A","-6168A","-6171C","-6179A","-6180A","C6183G","T6184A","A6186C","-6195G","G6204-","A6206-","C6207-","-6213T","G6215T","A6217C","C6233A","A6261T","G6263A","G6267A","T6279C","T6289A","A6316G","T6328G","A6332G","T6334G","A6340C","T6361C","A6368T","A6394C","A6406G","A6438T","C6496T","G6575A","T6582C","A6589G","A6599T","A6635G","T6641C","C6647T","A6648G","C6667T","-6693C","-6697G","C6777A","A6778G","C6779G","A6781C","A6789C","T6794C","A6798G","G6801A","T6815C","A6819G","G6821T","-6833T","A6836G","A6840G","A6848C","A6944G","-6954G","-6955A","-6956A","-6957T","-6958C","-6959A","-6960A","-6961T","-6962A","-6963T","-6964T","-6985C","-6990A","-6995G","-6997C","-6998A","-6999A","-7000C","-7002G","C7008A","T7009C","G7026A","G7063A","A7085G","A7095G","T7105C","G7152A","A7160G","-7162A","T7170C","C7204T","A7289C","G7307A","A7315G","A7372G","A7373G","A7420G","A7508G","G7552A","C7561T","A7620G","A7688G","A7689G","G7709C","A7714G","G7717A","G7720A","A7733C","C7742A","A7747T","T7751C","G7759T","G7769A","C7801A","G7831A","A7921G","A7936G","G7997A","A8029C","G8128A","G8137T","A8180G","A8184G","A8188G","A8233G","G8245A","C8411T","G8432A","T8451C","C8460A","G8462A","T8486C","C8499T","C8514T","G8516A","T8595G","G8666C","C8676T","G8880A","T8881C","A8893G","C8907T","T8913C","A8917G","A8922C","G8936A","G8954A","C8967T","G8970A","-9075T","T9084C","T9180A"],"INT":["S39N","L84I","E96D","I135V","Q136N","R163K","G193D","I268L","D270H"],"RT-p51":["A39E","K166R","E169D","T200A","E207A","V317A","D324E","R390K","W402T"],"RT-p66":["A39E","K166R","E169D","T200A","E207A","V317A","D324E","R390K","W402T","K451R","A466V","V467A","A477S"],"gp120":["K35R","N52D","-107N","N108T","-109N","-110R","-111T","-112T","-114S","-116N","Q127K","E136V","V137I","R138K","L142P","H145Q","N157-","N159K","N161E","T172S","Y195F","D241N","I243T","I249F","N261D","S263P","Q265W","-280P","I281M","Y290F","T308E","Q309D","K312T","E315R","R316K","K322R","-326S","N327D","-328R","K332Q","N364D","D365-","-379N","-381D","-382N","-383S","T385N","R391Q","I411V","N414S","N436E","I439T","K472R","K479Q"],"gp41":["V2I","L4M","I24V","K106R","D109E","N129G","R133K","E136Q","N140S","K144Q","Q147K","E148D","L152F","A156T","N166K","M176I","D232N","R236G","L242F","S293G","Q294R"],"nef":["R22Q","P53S","L85V","E108D","V180T","K184R","F191L","H192R","M194L"],"p17":["D47N","P48S","K59Q","A62K","R76K","T81A","A119E","D121G"],"p2":["A11N","V13-"],"p24":["A14P","L83V"],"p6":["D32E"],"rev":["Y18T","K30E","R50K","S61R","E94K","V97L","E111G","T114A"],"tat":["L3I","Y35Q","Y47H","I64N","D67N","Q76R"],"vif":["H30Y","F44Y","V51I","H73L","H127D","K128R","V129I","Q136P","K141Q","H192Y"],"vpr":["T19V","S41G","N48D","I61V","A93D"],"vpu":["D3Y","L5V","A6I","I7-","I9-","A10-","V14A","T24I","V26A","I79V"]},"labels":{"aa":"INT: S39N, L84I, E96D, I135V, Q136N, R163K, G193D, I268L, D270H; RT-p51: A39E, K166R, E169D, T200A, E207A, V317A, D324E, R390K, W402T; RT-p66: A39E, K166R, E169D, T200A, E207A, V317A, D324E, R390K, W402T, K451R, A466V, V467A, A477S; gp120: K35R, N52D, -107N, N108T, -109N, -110R, -111T, -112T, -114S, -116N, Q127K, E136V, V137I, R138K, L142P, H145Q, N157-, N159K, N161E, T172S, Y195F, D241N, I243T, I249F, N261D, S263P, Q265W, -280P, I281M, Y290F, T308E, Q309D, K312T, E315R, R316K, K322R, -326S, N327D, -328R, K332Q, N364D, D365-, -379N, -381D, -382N, -383S, T385N, R391Q, I411V, N414S, N436E, I439T, K472R, K479Q; gp41: V2I, L4M, I24V, K106R, D109E, N129G, R133K, E136Q, N140S, K144Q, Q147K, E148D, L152F, A156T, N166K, M176I, D232N, R236G, L242F, S293G, Q294R; nef: R22Q, P53S, L85V, E108D, V180T, K184R, F191L, H192R, M194L; p17: D47N, P48S, K59Q, A62K, R76K, T81A, A119E, D121G; p2: A11N, V13-; p24: A14P, L83V; p6: D32E; rev: Y18T, K30E, R50K, S61R, E94K, V97L, E111G, T114A; tat: L3I, Y35Q, Y47H, I64N, D67N, Q76R; vif: H30Y, F44Y, V51I, H73L, H127D, K128R, V129I, Q136P, K141Q, H192Y; vpr: T19V, S41G, N48D, I61V, A93D; vpu: D3Y, L5V, A6I, I7-, I9-, A10-, V14A, T24I, V26A, I79V"}}}]},{"name":"CRF46_BF1_NODE_0000002","node_attrs":{"div":0.08199999999999999,"clade_membership":{"value":"CRF46_BF1"}},"branch_attrs":{"mutations":{"nuc":["A3058G","C5544A","-6205C"],"gp120":["-107K","H324Y","T387I"],"gp41":["V69I"]},"labels":{"aa":"gp120: -107K, H324Y, T387I; gp41: 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 E10D, N17S, S39A, V72I, G163K; RT-p51: E29K, K104R, K122Q, D177E, E207N, D248N, D250E, K275R, I329L, A376S, T386I, R390K; RT-p66: E29K, K104R, K122Q, D177E, E207N, D248N, D250E, K275R, I329L, A376S, T386I, R390K, A477S, K512Q, E516D, Q524L, S534A, I559V; gp120: N1S, A2-, -3T, N5K, K18R, E34D, V37A, V56I, L58M, N71P, N102E, T104N, N105A, -109D, -110T, -111Q, -112K, -117G, -118I, -119L, -120R, -121E, P123Q, N157G, N158D, N161S, S162T, T170S, S250T, T255I, -280Q, T308A, -319A, K322N, -326I, -328E, -366T, -376G, -377S, -378N, -379N, -380E, D384-, I395M, V396I, I411V, N432P, N433G, N435K, N436T, T437Q, E438-, N446D, V468I, K479T; gp41: M7L, S35A, S107T, E110Q, D113Q, I124V, N126S, E136T, N140S, E148D, L152F, V187I, R214E, E220R, R236G, L242F, R276K, Q290W, S293G, V318I; nef: K4I, K7R, S9R, I16V, V33A, S45N, A50D, L55V, E63D, I101T, Q107H, D149N, K155R, M168I, D177E, R188S, M194R, E201D, Y202F, D205N; p1: H9N; p17: P48S, S54P, P66S, A83V; p2: A7V, A11N, V13L; p24: A65P, D71G, T72G, D81Y, L83F, P85T, V230I; p6: G16E, F17I, G18R, P23-, S24P, P25S, -26Q; p7: K26R; pro: K20R, N61D; rev: E11D, K32R, R38Q, I52V, S61R, A108V, E111G; tat: Y35Q, T39V, R57G, T58P, G79R, K85E; vif: H30Y, F44Y, S46T, E60D, E61K, A62D, K63T, I98V, G101D, E117D, H127Q, I154V; vpr: E6G, H77Q, S94G; vpu: I9L, V26A, I28L, R31K, E44K, D78N"}}},{"name":"CRF46_BF1_NODE_0000003","node_attrs":{"div":0.08745999999999998,"clade_membership":{"value":"CRF46_BF1"}},"branch_attrs":{"mutations":{"nuc":["T595A","C698A","G2602T","A2818G","A4130C","A4262G","A5299G","-6203A","A6330G","A6807G","C6810G","A6811C","T6815G","A6817T","G6820A","C6822T","T6823C","A6825C","T6826A","C6829T","-6830C","-6831C","-6832C","G6935A","-6988T","-6989G","T7322A","A7426G","T7433C","G7627T","A7782G","A7943C","G7995A","T9084A"],"INT":["T119P"],"gp120":["A106L","N108E","N159S","S162N","N327-","-329K"],"gp41":["Q108H","N160S","R231K"],"p17":["F87Y","D121E"],"p2":["V12T"],"p24":["A14S"],"rev":["K32T"],"tat":["Q78H"]},"labels":{"aa":"INT: 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W57S, L58V, V85F, N126T, V153I, R188H, I194L, Q204K; p17: T53S, Y79F, F87Y, Q90K, V94I, K95Q, G123E; p2: V7A, N9H, A11-, V12T, -13V; p24: L83V, V191I, A194S, T210S, G225S; p6: N3S, P5L, -26Q, K31R, P49Q, Q52K; p7: Q9P, I12N, A54V; pro: L10I, T12K, L19Q, K20T, L24I, D30N, L33F, D35N, M46I, I54V, K57R, L63P, A71V, V82A, N88D; rev: E10T, Q36K, Q74L, L78I, E79D, R80Q, H82R, N84D, S86N, G98E, N99S, Q101P; tat: K24S, R29K, F32Y, W36R, T39I, R56H, Q60K, S61G, P68S, T82K; vif: N19S, T20K, F39G, K63N, R93T, I154L, A155G; vpr: L68I; vpu: V14L, R41N, E44K, E58D, L73P, V74I, I75V, P76F, N80D"}}}]},{"name":"CRF38_BF1_NODE_0000002","node_attrs":{"div":0.10174000000000001,"clade_membership":{"value":"CRF38_BF1"}},"branch_attrs":{"mutations":{"nuc":["T200C","G424A","A607G","G771C","A968C","A3543G","A4764C","T5451C","T5492C","-5812C","-5813T","-5814T","-5815G","-5816T","-5817T","-5818A","-5819T","T6155C","C6165-","-6201C","G6303A","T6337C","A7366G","G7630T","G8329A","A8887T"],"RT-p51":["A286T"],"gp120":["T104S","R150K","H324Y","-369N"],"gp41":["H258R"],"nef":["R49K"],"p17":["R30K"],"p24":["A14P","E79D"],"vif":["K60Q"]},"labels":{"aa":"RT-p51: A286T; gp120: T104S, R150K, H324Y, -369N; gp41: H258R; nef: R49K; p17: R30K; p24: A14P, E79D; vif: 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1":["N9H"],"p17":["T53S","A54S","I61M","G62A","Q63H","K91R","E93D","D102E","N109K"],"p2":["E2A","T10S"],"p24":["I153L","R154K","T171V","L172V","A177S","T200S","A217S"],"p6":["N3S","T8S","S24P","-26Q","L35M"],"p7":["S4G","Q9P","I12T"],"pro":["V15I","L63C","G68D","A71V","V77I","I93L"],"rev":["D7G","V16I","Y28F","I55L","Q101P","I102V","S106P","E111D"],"tat":["N7K","D9E","T23N","Y47H","S62N","I74V"],"vif":["F39C","R41K","A62D","R93S","G101D","K157Q","E179K"],"vpr":["G6E","Y15H","N28A","I61T","I63T","I84H"],"vpu":["D3N","A6V","A10V","K31R","L33I","M71V","G72Q"]},"labels":{"aa":"INT: 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V33A, E38D, A50D, L55V, F139M, E151D, M173A, R178K, K182V, K184R, D205N; p1: N9H; p17: T53S, A54S, I61M, G62A, Q63H, K91R, E93D, D102E, N109K; p2: E2A, T10S; p24: I153L, R154K, T171V, L172V, A177S, T200S, A217S; p6: N3S, T8S, S24P, -26Q, L35M; p7: S4G, Q9P, I12T; pro: V15I, L63C, G68D, A71V, V77I, I93L; rev: D7G, V16I, Y28F, I55L, Q101P, I102V, S106P, E111D; tat: N7K, D9E, T23N, Y47H, S62N, I74V; vif: F39C, R41K, A62D, R93S, G101D, K157Q, E179K; vpr: G6E, Y15H, N28A, I61T, I63T, I84H; vpu: D3N, A6V, A10V, K31R, L33I, M71V, 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L45V, V54I, V72I, E96D, P119T, G163R, D207E, R211K, I218T; RT-p51: K122E, I135M, D250E, T286A, T386I, R390K, Y405H; RT-p66: K122E, I135M, D250E, T286A, T386I, R390K, Y405H, K452Q, E527N, K550R; gp120: V56Q, V57F, E59K, I80V, -106A, -107T, N108D, -109A, -110T, -111T, -112T, -113A, -114S, -115S, -116S, -117L, -118K, -119E, Q142R, K143T, H145N, D159S, N160I, S162N, D202N, K203E, K204T, T216V, N234-; gp41: M4L, V72L, L81F, I84L, K106R, Q108L, E109D, E110Y, D113T, N160T, N166K, P210F, F255Y, R259L, I266S, E272G, L273H, R277W, A281V, Y291-, W292-, S293-, Q294-, E295-, L296-, K297-, N298-, S299-, A300-, I301-, S302-, L303-, L304-, N305-, T306-; nef: S8G, I10K, V11A, E15V, R19K, V33A, R39K, E63D, Y81F, V85F, H89F, L139F, V153I, N157T, S169N, R188G, L191R, I194L, R198K; p17: R76T, A83V, Q90K, E99D; p2: T12N; p24: V11M, S14P, S16T, A31T, S44A, T58S, R154K; p6: -19E, E20Q, K21T, I22T, T23P, P24-, H25-, P26-; p7: V13I, K20R; pro: N37D, R43K; rev: S8D, D9E, E11V, F21Y, A54E, L60F, D84E, Q95L, T108A; tat: L3P, Y35Q, Q54R, R57S, D61N, S62R, S68P, P75S; vif: F39S, R41K, R47S, A62D, V85A, R93S, I109V, A155G, K157R, K160R, K167S, P177H; vpr: H77N; vpu: L4E, A5V, A15V, H74D, P76L, 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N47Q, E63D, Y81F, G83E, R105K, Q107R, Y120I, E151D, A156D, N157T, N162T, K184E, R188K, R198K; p17: Q12E, R58K, I60L, P66S, P69S, L75I, R76K, E102D; p24: M6I, L15M, E128D, T171V, E180D, D187E, V191I; p6: N47S; p7: V13I, R29K, K47R; pro: D60E, Q63E, E65D, I72T; rev: E11D, R14T, Y28F, R53G, A54E, V104G, P107S, *117Q; tat: V4I, S24N, R29Q, R36H, I39V, T58P, Q60H, D67N, S68P, P81T; vif: H30Y, R37K, F39C, V51I, E61D, D62N, S118F, T159E, Q178R, G182D; vpr: N28S, I63M, S94N; vpu: P3T, A8T, L12F, L27F, N81I"}}},{"name":"MW802822","node_attrs":{"div":0.17219,"accession":"MW802822","clade_membership":{"value":"CRF89_BF1"},"country":{"value":"ES"},"date":{"value":2017.0},"Strain_name":{"value":"M1079"},"LANL_subtype":{"value":"CRF89_BF1"}},"branch_attrs":{"mutations":{"nuc":["C151T","T165-","G167A","A359G","A425G","C471G","A491G","A516T","G524A","G557A","C587T","G615A","G650A","A653G","A656G","C662T","A747G","T748C","G755C","G762A","A774C","A779G","C845T","A968T","A980G","T992G","T1052C","C1060A","C1094T","G1109A","C1220A","G1290A","A1359T","G1430A","G1472A","G1495A","A1496G","A1526G","A1529C","A1532C","A1592G","C1598T","G1697A","T1741C","A1743G","T1785G","A1786G","C1787A","G1794A","C1796T","A1804G","C1826T","A1839G","A1857T","A1894T","G1920A","A1980G","A1986C","G2008A","A2012G","A2014G","T2080G","G2134A","A2230G","T2257C","C2263T","C2281T","C2296T","T2326C","A2403G","G2602A","A2629G","C2635T","A2726G","A2794G","A2896G","G2969A","A3020C","C3067A","C3095A","T3197G","G3221T","C3225T","A3226G","A3274G","G3307A","C3322T","G3442A","C3498T","C3535T","A3543T","G3557A","G3631A","C3649A","A3655G","G3686A","A3817G","G3989A","T4039C","A4096G","C4141T","A4148G","G4263C","T4388G","C4501T","G4689A","T4702C","A4721G","A4771C","G4799A","C4803A","T4842G","A4845G","A4847G","G4862A","C4871T","A4911C","T4914C","T4965C","A4969G","T5018G","C5019T","G5069A","G5128A","A5150C","G5176A","A5191G","A5233C","C5237T","C5248T","T5354C","T5391C","T5436C","A5446G","C5461A","G5463A","C5559T","A5570G","T5584C","G5599A","A5614C","A5622G","G5653A","C5679T","C5688G","G5700A","G5729A","A5735T","A5743C","A5805G","-5825A","T5860C","G5864A","C5924T","G6020A","G6029C","A6030C","A6031T","A6079G","C6087G","A6094C","T6134C","T6154C","-6167A","-6170G","-6171T","-6172C","-6173A","-6174G","-6175T","A6182G","A6186G","C6187T","C6190T","A6194G","C6198G","-6201A","C6205T","T6213G","A6282T","A6286C","G6323A","A6324G","G6329A","C6331T","A6337C","-6340T","T6341A","C6343T","G6425A","A6464G","G6466A","G6532A","G6572A","A6659T","G6682A","-6697A","-6698C","-6699C","-6700G","-6701A","-6702T","A6733G","C6748T","C6765T","A6789C","A6790C","A6796G","A6801G","A6805G","A6809G","A6812G","T6815C","A6818C","G6820A","T6821A","C6822A","T6823A","A6833C","A6834C","A6848C","C6849A","C6925T","A6926G","T6932G","-6948A","-6949A","-6950A","-6951C","-6952A","C6991-","-6994A","-6995G","-6997C","-6999A","A7001G","-7002G","T7003G","G7004A","A7037G","T7039G","G7060A","C7064A","A7085G","A7113G","T7150C","A7160G","-7162T","A7225G","A7231G","A7268G","A7375G","A7450G","G7453A","C7463A","A7522G","C7547A","T7591C","C7625T","A7626T","G7630T","T7636C","C7651A","A7669G","G7690A","G7712A","A7713T","A7747C","A7756T","C7801A","G7862T","G7943C","A8018C","G8050A","T8155C","T8156C","G8157T","A8193G","G8194A","T8221C","A8241G","A8258T","G8274T","T8278A","G8329A","T8334G","G8373A","A8388G","G8418A","A8456C","A8531G","G8590C","C8640A","A8647G","T8648G","G8666T","C8688A","C8741T","A8746T","T8747C","C8791A","C8810T","T8860C","G8864T","A8869C","G8892C","A8901T","G8902C","G8905C","A8938G","A8953G","C8957T","A8969G","T9025G","C9041A","C9068T"],"INT":["V72I","T125A","G163A","S205A"],"RT-p51":["K103R","I178M","R211G","V292I","I309L","D324E","Q334N","L368V","T376S","T377M","I393M"],"RT-p66":["K103R","I178M","R211G","V292I","I309L","D324E","Q334N","L368V","T376S","T377M","I393M","S468F","Q483L","D488N","V531I"],"gp120":["D4N","D34E","E59P","T78R","A106V","-107S","N108T","-109N","T110A","-111S","-114A","-116N","-117N","-119D","-120N","K143I","D157S","D159N","T161S","-162S","A191T","K204E","E240K","T269S","-280P","N304I","K312T","Q316R","T319A","K320E","K322Q","S323K","T332Q","N358D","S360A","-365K","-367T","-376G","-377S","I395V","I411V","Q414H","N420S","N436D","K472E"],"gp41":["I24M","N42S","L54M","L82M","Q108F","E137I","E148D","N166K","V187F","N239H","W285L","K297R","E313G","I319L","R324I","F325L","L344W"],"nef":["V11I","I16V","A26T","E38D","G83A","L100I","Y102W","E108D","H116N","Y120F","Y135F","P150Q","M173T","E174D","E176A","K184Q","R188T","H199R","K204R"],"p17":["L46V","I61L","V94I"],"p24":["M6A","V11I","E79D","H87Q","T110N","D163E","D187N","T210S"],"p6":["I21T","T22A","-26K","Q28K","K30E","K31G","E32Q","E33G","A39T","K42R"],"p7":["R10K","E21D"],"pro":["K14R","K20M","R41K","N61S","Q63T","I72V"],"rev":["A15V","I19V","R32T","Q57A","A68T","L103P","E116K"],"tat":["S24G","H65R","S70P","Q78H"],"vif":["A35T","F39S","D62A","H73N","S86A","I87V","I109L","Y110H","Y127H","K128R","R181K"],"vpr":["N16H","H45Y","S96P"],"vpu":["A16T","R41K","Y43F","I46L","A61V","P73H"]},"labels":{"aa":"INT: V72I, T125A, G163A, S205A; RT-p51: K103R, I178M, R211G, V292I, I309L, D324E, Q334N, L368V, T376S, T377M, I393M; RT-p66: K103R, I178M, R211G, V292I, I309L, D324E, Q334N, L368V, T376S, T377M, I393M, S468F, Q483L, D488N, V531I; gp120: D4N, D34E, E59P, T78R, A106V, -107S, N108T, -109N, T110A, -111S, -114A, -116N, -117N, -119D, -120N, K143I, D157S, D159N, T161S, -162S, A191T, K204E, E240K, T269S, -280P, N304I, K312T, Q316R, T319A, K320E, K322Q, S323K, T332Q, N358D, S360A, -365K, -367T, -376G, -377S, I395V, I411V, Q414H, N420S, N436D, K472E; gp41: I24M, N42S, L54M, L82M, Q108F, E137I, E148D, N166K, V187F, N239H, W285L, K297R, E313G, I319L, R324I, F325L, L344W; nef: V11I, I16V, A26T, E38D, G83A, L100I, Y102W, E108D, H116N, Y120F, Y135F, P150Q, M173T, E174D, E176A, K184Q, R188T, H199R, K204R; p17: L46V, I61L, V94I; p24: M6A, V11I, E79D, H87Q, T110N, D163E, D187N, T210S; p6: I21T, T22A, -26K, Q28K, K30E, K31G, E32Q, E33G, A39T, K42R; p7: R10K, E21D; pro: K14R, K20M, R41K, N61S, Q63T, I72V; rev: A15V, I19V, R32T, Q57A, A68T, L103P, E116K; tat: S24G, H65R, S70P, Q78H; vif: A35T, F39S, D62A, H73N, S86A, I87V, I109L, Y110H, Y127H, K128R, R181K; vpr: N16H, H45Y, S96P; vpu: A16T, R41K, Y43F, I46L, A61V, 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N80I"}}},{"name":"MW344920","node_attrs":{"div":0.17374000000000003,"accession":"MW344920","clade_membership":{"value":"CRF89_BF1"},"country":{"value":"ES"},"date":{"value":2016.0},"Strain_name":{"value":"P4464"},"LANL_subtype":{"value":"CRF89_BF1"}},"branch_attrs":{"mutations":{"nuc":["T156-","C207T","A215G","T288C","C369A","G453A","G455A","A516T","T534A","C537A","G595A","G607A","A609G","A678G","A682G","A686G","G689A","A699C","G735A","C830T","T861G","A878G","A941G","T1001C","C1005G","T1046A","C1133T","G1192A","T1214C","A1217G","T1299C","T1310C","G1394A","T1403C","T1444C","C1447A","A1448T","A1449-","A1450-","T1451-","A1452-","C1453-","A1454-","-1459C","A1474G","A1494C","G1495A","G1498A","A1525G","G1588A","A1614G","T1646C","A1687G","G1734-","A1735-","G1736-","T1741A","A1743G","C1744T","C1745A","-1746A","-1747C","-1748C","C1825A","C1903A","G1942A","A1969G","A2149G","T2199G","A2332G","G2362A","T2434C","A2459G","A2519G","C2596T","A2665C","C2708T","C2714G","A2825G","G2830A","C2848T","G2887A","G2951A","C2958G","A2972G","A3031G","A3097G","G3158A","G3170A","G3264A","C3266T","C3346T","C3399T","T3424C","G3483A","A3490G","C3542A","G3544T","A3565G","T3566C","A3608G","A3630G","T3644A","C3653A","A3676C","G3755A","C3756A","C3857A","G3859A","G3869A","G3901A","A3910C","G3916A","G3935A","G3952A","G3989A","A4003G","T4039G","C4075T","G4176A","G4249A","G4696A","T4702G","G4727A","G4735A","C4761T","G4770A","A4773G","C4827T","C4871A","C4889T","T4910C","G5030A","A5061G","G5123A","A5186C","T5197C","G5212A","T5224A","A5233G","T5254C","G5290A","T5294C","G5365C","T5384C","T5479C","C5481A","G5483A","C5484A","C5511T","G5557A","G5575A","A5614C","T5616C","C5663T","C5688A","G5729A","A5730C","G5737C","A5748T","A5840T","A5842G","A5845G","A5861G","A5862C","G5864A","A5867G","T5870C","G5948A","C5989T","C6007T","G6020A","A6022G","T6025C","A6065G","G6121A","-6167A","-6168A","-6169T","-6170G","-6171T","-6172C","C6180T","A6185G","A6186C","C6195A","A6200-","C6202-","G6204-","C6205-","A6206-","C6207-","C6208-","G6224A","G6225A","C6228A","T6250G","C6278A","A6283G","C6287A","A6288C","C6305A","T6306C","G6323A","T6328C","C6331T","A6332G","T6334G","G6336C","G6425A","A6456G","T6457A","C6482A","C6483T","A6508G","G6530A","G6611A","C6618T","A6628G","T6721C","C6748T","G6754A","A6778C","T6787C","T6794G","A6805-","A6806G","G6808A","A6809G","C6810G","A6811C","G6814A","T6815G","A6817T","G6820A","T6821G","C6822T","T6823C","C6824T","A6825C","C6829T","A6833-","C6849A","A6910G","G6935A","G6936A","A6947G","C6949A","-6950A","-6951C","-6952A","-6953G","-6954A","-6955G","-6956T","-6957T","-6958C","-6959A","-6960A","-6961G","-6962A","-6963A","-6964T","C6991-","C7006A","A7013G","C7020T","G7079C","C7089A","A7157G","A7161C","-7162A","T7170C","A7197G","A7216G","A7225G","A7275G","G7288A","G7440T","C7498T","G7513A","G7517A","G7519A","A7532C","A7542G","G7552A","A7553C","T7579C","A7620G","A7641G","T7642G","G7701A","A7721G","C7742A","G7759A","C7801T","A7858G","G7862A","G7890A","T7913G","T7921A","A7947G","G7992A","G7997A","A7998C","C8009A","A8019G","A8023G","A8076G","G8079A","A8105G","A8118G","G8130A","A8152G","T8158G","A8170C","A8172G","G8173A","T8176C","G8208A","C8213A","C8223T","A8241G","A8255T","A8258C","T8281C","C8291T","T8292G","A8447G","A8456C","C8499G","T8505C","A8531C","G8554A","G8656A","A8666C","T8746G","C8747G","A8754T","C8755G","G8774A","T8786C","A8805C","C8840T","A8852G","T8914A","A8930G","C8960A","T8961G","A8963C","C8964T","A8965G","A8967T","T8972C","A9007G","-9009G","-9014G","G9016C"],"INT":["L28I","V32I","V54I","V72I","G134D"],"RT-p51":["V35R","K122E","I142V","Q207E","I244V","A286T","A288G","I293V","A355T","G359S","R390K","A435V"],"RT-p66":["V35R","K122E","I142V","Q207E","I244V","A286T","A288G","I293V","A355T","G359S","R390K","A435V","R463K","Q483N","S491P","I505V","K512R","L517I","Q520K","K527N","A554N"],"gp120":["N3A","D4N","N5D","A32T","V56M","E59K","N71D","-105N","-106L","-107K","N108E","T110-","T112-","G124K","A125E","N132K","K142M","H145T","L151T","D157N","N160G","A191T","N201R","P210I","V226M","A253T","T255I","L314V","S326-","N327-","-328N","T332K","G361K","N365E","-367E","-368F","-369K","-370N","-371E","T387V","P389L","A409P","A412E","N435D","N436T","I439T","K448R","K474R"],"gp41":["V72I","K77Q","Q80R","I84L","K106R","D109E","D113G","R133K","N140G","Q147K","V187I","R196K","L204V","F206L","E215G","G230D","D232T","N239S","H258R","R259H","T268A","E272G","R276H","C285W","Q290R","S302N","L304I","T307I","E313G","I318F","I319L","L330C"],"nef":["E38D","P53A","R71K","R105K","E108D","F135W","T138C","K155Q","K184E","F191Y","C206*","*207D"],"p17":["Q12K","E40K","I61L","S67T","L68I","C87Y","R91K","I92V","T115A","Q116R","K122Q"],"p2":["V7A","T8N","T10-","A11-","N12T"],"p24":["V2I","S44A","P92A","R154K"],"p6":["N3S","-23P","P24S","S25P","P49H"],"p7":["K3R","R10Q","R11K","K20R","R41K","T50A"],"pro":["D35E"],"rev":["R50N","A54E","I59V","N86S","I102V","L104V","T108P","V109I"],"tat":["L3P","Y35Q","R36Q","G61S","D67N","N80D"],"vif":["R37K","F39C","R50K","D62N","K63E","T159A"],"vp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L28I, V32I, V54I, V72I, G134D; RT-p51: V35R, K122E, I142V, Q207E, I244V, A286T, A288G, I293V, A355T, G359S, R390K, A435V; RT-p66: V35R, K122E, I142V, Q207E, I244V, A286T, A288G, I293V, A355T, G359S, R390K, A435V, R463K, Q483N, S491P, I505V, K512R, L517I, Q520K, K527N, A554N; gp120: N3A, D4N, N5D, A32T, V56M, E59K, N71D, -105N, -106L, -107K, N108E, T110-, T112-, G124K, A125E, N132K, K142M, H145T, L151T, D157N, N160G, A191T, N201R, P210I, V226M, A253T, T255I, L314V, S326-, N327-, -328N, T332K, G361K, N365E, -367E, -368F, -369K, -370N, -371E, T387V, P389L, A409P, A412E, N435D, N436T, I439T, K448R, K474R; gp41: V72I, K77Q, Q80R, I84L, K106R, D109E, D113G, R133K, N140G, Q147K, V187I, R196K, L204V, F206L, E215G, G230D, D232T, N239S, H258R, R259H, T268A, E272G, R276H, C285W, Q290R, S302N, L304I, T307I, E313G, I318F, I319L, L330C; nef: E38D, P53A, R71K, R105K, E108D, F135W, T138C, K155Q, K184E, F191Y, C206*, *207D; p17: Q12K, E40K, I61L, S67T, L68I, C87Y, R91K, I92V, T115A, Q116R, K122Q; p2: 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E11D, L28I, P30A, A125V, G134D, V165I, S205A, T206S, R211K, I220V; RT-p51: D123E, E138A, I142T, D177E, I178L, T200A, I202V, F214L, V245I, S251C, R281K, I293V, P294Q, K297R, D324E, R356K, K366R, T376A, S379G, T386I, R390K, L394Q, E436G; RT-p66: D123E, E138A, I142T, D177E, I178L, T200A, I202V, F214L, V245I, S251C, R281K, I293V, P294Q, K297R, D324E, R356K, K366R, T376A, S379G, T386I, R390K, L394Q, E436G, S446A, K452E, K465Q, A466V, D488N, K527M, K530R, V531I, I559V; gp120: N1S, A2V, E4G, D34K, V37A, N52A, V57N, E59T, N64E, N71D, T78K, D85E, -105S, -106L, -107K, N108E, L142R, I156M, N157D, D159G, N160T, S161-, S162-, D183E, Y195F, N201K, K203E, K204N, K212R, K224R, E240K, I243V, E262G, -280R, R287Q, K300R, V305I, T308E, N311G, K312Q, E315T, K318R, -319K, K322E, H324L, -328N, -329T, T330K, K332R, -367R, -368E, -369N, -370E, -371T, -372V, -373F, -374R, -375N, -376E, V396I, M398L, A409P, N414E, N433G, N434G, K436G, N446D, K448R, I463V, V468I, R472S, K479R; gp41: M4L, G13S, T25A, N42S, S101Y, 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E11D, K111R, T122I, S123N, A124T; RT-p51: T39L, V135I, Q207E, R281G, T286P, I326V, L394Q, A435E; RT-p66: T39L, V135I, Q207E, R281G, T286P, I326V, L394Q, A435E, A477T, Q524P; gp120: T22P, S32A, E34D, Q54R, V56L, E57D, I80V, -106V, -109N, -111G, -112T, -113N, -114S, -115T, -116S, -118P, -119L, -120K, -121E, -123L, A125E, Q127K, N132K, L142K, K143E, R150K, L151S, S162T, K204E, R245S, T255N, N261K, S263P, Q265W, I281L, R287Q, G307R, K312N, L314I, K320R, R322G, P326E, -328G, -329T, K332R, S335T, N364D, D365-, T366-, -384D, N420T, L425I, N432K, N434T, N435T, K436G, T437N, E464Q, R472T, K482R; gp41: Y75F, K77S, Q79H, N96D, Q108L, E110A, D113N, K122R, S125N, N126S, N140R, Q147H, A151K, D163S, K172R, I210L, D247E, R277T, L303S, A325I; nef: E15A, A23T, G83A, F143Y, E151D, E176D, K182M; p1: K4R, I5L; p17: G49D, S54A, R58Q, G62A; p2: V7A, -11A, V13-; p24: A14S, L15I, V27I, E128D, T178S; p6: E19-, I21G, T22I, P23T, S24P, P25S, -26P; pro: N37D; rev: E10D, A15T, I21S, Y28P, T91P, Q95H, T108A, V109I; tat: N7S, K24S, R29K, L36W, G61D, I74T; vif: H30Y, F39S, H48N, K122Q, H127Y, K160R, E179K, S186R, N190H; vpr: G6E, E13A, E17A, N48D; vpu: V5D, L7V, A16T, D44E, A50T, -69D, E70-, P76L"}}},{"name":"AF408630","node_attrs":{"div":0.14864000000000002,"accession":"AF408630","clade_membership":{"value":"CRF12_BF"},"country":{"value":"AR"},"date":{"value":1997.0},"Strain_name":{"value":"A32989"},"LANL_subtype":{"value":"CRF12_BF"}},"branch_attrs":{"mutations":{"nuc":["A255C","T288C","A399C","C583T","A604G","G620A","A678G","T771G","G784A","G821A","T875C","A911T","T1040C","C1060A","A1186G","C1211T","T1280G","A1328G","T1334A","A1361G","A1492C","G1503A","A1525G","A1532C","A1660G","G1697A","G1709A","T1783A","C1826A","A1918G","C1985G","A1993C","A2119G","A2221G","A2224G","T2364G","A2380G","T2479A","C2581T","A2623G","C2749T","A2815G","G2828A","A2839C","C2848T","T2873A","A3031G","A3066G","A3109G","T3165C","A3221G","C3225T","G3264A","C3275T","G3283A","C3292A","C3319T","A3367G","C3415T","A3490G","A3503C","G3508A","G3556A","G3595A","A3619G","A3637G","A3676G","G3718A","A3766G","A3770G","A3877G","G3965A","A4076T","C4110T","C4146A","G4148A","G4255A","A4264C","G4495A","G4737A","A4769G","C4771G","A4773G","A4804T","T4820A","A4969G","T5003C","A5085C","A5200G","A5293C","A5302C","A5355G","G5483A","G5484C","G5548A","T5577A","T5584C","T5641C","C5654T","A5659T","C5686T","T5707A","T5708G","G5758C","G5791T","T5870C","C5917T","A5955T","T5992C","T6004C","G6023A","G6133A","A6158C","T6163C","A6168C","T6169C","G6170C","-6171A","C6172T","A6173G","A6177C","G6179A","C6180A","C6181A","C6183A","C6187T","C6190A","G6195A","C6196T","C6198G","T6199C","-6200A","-6201C","A6203C","G6204T","T6205G","A6206G","G6207A","C6208A","A6209-","C6210-","G6220T","T6222A","C6278G","A6288G","T6310C","C6325T","A6338C","A6350T","C6370T","C6404G","C6428A","T6460G","G6466C","C6562T","G6566C","A6573G","C6601T","G6605C","G6611A","A6654C","C6660T","C6713A","C6748G","C6758T","A6765G","G6771A","A6801G","A6807G","A6809G","T6815C","C6829G","-6833C","-6834C","G6871A","T6888C","G6889A","-6989G","-6990A","-6996G","-6997A","-6998T","-6999C","C7006A","T7009C","A7032G","A7036G","A7037G","A7107G","A7148C","T7150G","A7152C","A7154G","T7156G","C7170T","G7235A","T7243A","G7256A","G7269A","G7291C","T7325C","C7328A","G7346A","G7395A","G7440A","A7641G","G7712A","G7720A","G7846A","G7873A","T7913G","A7943G","G8006A","G8008A","C8009A","A8014G","T8028C","G8045C","G8208C","C8223T","G8249A","G8269A","T8277C","G8283A","T8366C","A8370T","G8373C","T8374G","G8385C","A8458G","A8487G","C8688A","G8759T","T8786C","C8809A","G8864T","T8887G","G8905T","C8906A","C8913T","G8915T","A8922T","A8924T","G8935A","T8947A","C8948T","C9023T","C9041T","C9068T"],"INT":["D64N","I101L","T112I","A124N","A125T","G163S"],"RT-p51":["V90G","V245M","E248D","L260I","D324G","M357T","T376A","T377I","R390K","D399E"],"RT-p66":["V90G","V245M","E248D","L260I","D324G","M357T","T376A","T377I","R390K","D399E","T470P","I559V"],"gp120":["E34V","E57N","N102H","T104D","-106T","T107K","-109S","-111N","-112N","-113S","-114T","-115L","-116E","-117D","-118Q","E122-","L142V","Q145R","N160S","S161R","S162P","I166L","P184A","P192T","D202E","K204N","A238P","E240G","D251H","A253T","N267T","T269I","I298M","H302Y","N304S","S306N","Q316R","K318R","K319E","F325L","-328T","M345T","-367G","-368S","-369N","-370E","-371T","T385-","K393R","I395V","N418S","N432Q","N433T","N434G","K436Q","T439I","V461I","V468I","R472K","Q479H"],"gp41":["F8L","L9I","A15T","R31K","N42S","R46K","D113G","E137K","D163N","L204V","R214G","V235I","L242S","D248H","S302T","T307I","D316N","R327K"],"nef":["I10L","V11R","E15H","N39R","R49G","V85L","H116N","L139F","A156D","E174D","K182R","R188L","L191F","I194F","R198K","F202Y","D205G"],"p1":["K10R"],"p17":["A83V","Q90R","T115A"],"p2":["V12T"],"p24":["R18K","T110N","D152G"],"p6":["L35Q"],"p7":["Q9P","V13I","K20R"],"pro":["L10I","L63V","E65D"],"rev":["I21Y","E32G","R53H","A54K","S56G","R66P"],"tat":["K24R","R29Q","L36H","A58T","S70P"],"vif":["V51I","D62G","K63E","H73L","D78E","K128R","K167Q"],"vpr":["Q66H","I84V"],"vpu":["V5T","A16I","I18L","L27F","L34R","E51Q","D60E","A61L","E62S","E63A","A65G","A66D","L67M","-69P","E70L","M71I","G72L","P73G","L74N","P76-","G77-","N78-","I79-"]},"labels":{"aa":"INT: D64N, I101L, T112I, A124N, A125T, G163S; RT-p51: V90G, V245M, E248D, L260I, D324G, M357T, T376A, T377I, R390K, D399E; RT-p66: V90G, V245M, E248D, L260I, D324G, M357T, T376A, T377I, R390K, D399E, T470P, I559V; gp120: E34V, E57N, N102H, T104D, -106T, T107K, -109S, -111N, -112N, -113S, -114T, -115L, -116E, -117D, -118Q, E122-, L142V, Q145R, N160S, S161R, S162P, I166L, P184A, P192T, D202E, K204N, A238P, E240G, D251H, A253T, N267T, T269I, I298M, H302Y, N304S, S306N, Q316R, K318R, K319E, F325L, -328T, M345T, -367G, -368S, -369N, -370E, -371T, T385-, K393R, I395V, N418S, N432Q, N433T, N434G, K436Q, T439I, V461I, V468I, R472K, Q479H; gp41: F8L, L9I, A15T, R31K, N42S, R46K, D113G, E137K, D163N, L204V, R214G, V235I, L242S, D248H, S302T, T307I, D316N, R327K; nef: I10L, V11R, E15H, N39R, R49G, V85L, H116N, L139F, A156D, E174D, K182R, R188L, L191F, I194F, R198K, F202Y, D205G; p1: K10R; p17: A83V, Q90R, T115A; p2: V12T; p24: R18K, T110N, D152G; p6: L35Q; p7: Q9P, V13I, K20R; pro: L10I, L63V, E65D; rev: I21Y, E32G, R53H, A54K, S56G, R66P; tat: K24R, R29Q, L36H, A58T, S70P; vif: V51I, D62G, K63E, H73L, D78E, K128R, K167Q; vpr: Q66H, I84V; vpu: V5T, A16I, I18L, L27F, L34R, E51Q, D60E, A61L, E62S, E63A, A65G, A66D, L67M, -69P, E70L, M71I, G72L, P73G, L74N, P76-, G77-, N78-, I79-"}}}]},{"name":"CRF12_BF_NODE_0000007","node_attrs":{"div":0.12403000000000003,"clade_membership":{"value":"CRF12_BF"}},"branch_attrs":{"mutations":{"nuc":["G261-","C262-","T1063C","G2593A","A2725G","G2937A","C3319T","T3497C","A4060G","C4140G","G4263A","A4270G","G4407A","A4769C","T4932A","A4952T","G5548C","C5567A","A5866C","T6025A","-6171C","C6180G","T6242A","A6324G","C6343T","A6581G","-6697A","-6698C","-6699A","-6702T","G7315A","A7669G","T7913G","A7953G","G7965A","G8030T","T8035C","T8138A","C8648T","C8972G"],"INT":["T122S","R211K"],"RT-p51":["R281K"],"RT-p66":["R281K","S468P"],"gp120":["N157S","I243V","T330S"],"gp41":["M4I","N42S","L204V","D217G","G221E","A243S","W279R"],"p2":["V12T"],"p24":["L111P"],"rev":["E11D","L18I","S61I","Y63H","V97E"],"tat":["A58P","T64N","T82A","E86K"],"vif":["A61D","S116T","K122N"]},"labels":{"aa":"INT: T122S, R211K; RT-p51: R281K; RT-p66: R281K, S468P; gp120: N157S, I243V, T330S; gp41: M4I, N42S, L204V, D217G, G221E, A243S, W279R; p2: V12T; p24: L111P; rev: E11D, L18I, S61I, Y63H, V97E; tat: A58P, T64N, T82A, E86K; vif: A61D, S116T, K122N"}},"children":[{"name":"AF385935","node_attrs":{"div":0.15252000000000004,"accession":"AF385935","clade_membership":{"value":"CRF12_BF"},"country":{"value":"UY"},"date":{"value":1999.0},"Strain_name":{"value":"URTR35"},"LANL_subtype":{"value":"CRF12_BF"}},"branch_attrs":{"mutations":{"nuc":["A46G","T200C","G215A","A256G","G279A","A301G","A369G","G424A","A474G","G508A","G520C","A530G","G562A","A571T","C669A","C765T","G869A","C890T","A911G","T992A","A1193G","G1487A","A1529G","C1598T","C1670G","A1673G","T1676C","C1721T","A1733G","C1745A","-1746A","-1747C","-1748C","C1756A","C1761G","G1766A","A1774G","G1784A","G1942A","C1987T","A2161G","T2245A","C2263T","G2273A","T2383C","A2519G","G2524A","C2527T","G2530A","A2560T","T2597C","A2617G","A2665C","A2726G","G2727C","C2749T","A2773C","C2831T","T2899C","A3096T","T3121C","A3192G","A3196G","C3412T","T3431G","A3435G","G3483A","C3499T","G3595A","T3602A","G3664A","A3682G","A3715G","G3802A","A3808C","T3850C","C4075T","A4107G","C4147T","G4150A","A4178G","C4207T","A4262C","A4264C","G4267A","C4321T","T4388G","G4464A","G4495A","A4498G","C4534T","A4760T","A4774C","G4862A","G4864A","A5015G","A5085C","A5119G","G5121A","G5131A","A5191G","C5237T","G5267A","A5268C","T5384C","C5424T","G5427A","G5447A","C5461A","G5483T","G5491A","A5493G","A5494G","A5533G","A5556G","G5558A","G5561A","T5576A","C5611A","A5613C","A5621T","A5631T","C5651T","T5677A","A5704C","G5711A","T5731C","A5733T","A5734C","C5825A","C5878T","A5956C","G5958C","A5959G","T5964C","T5980A","G6020A","A6073G","T6184A","A6185C","A6186G","G6194T","G6195T","-6200C","-6201A","C6202A","G6204A","G6211C","-6212C","-6213T","-6214G","-6215A","-6216A","-6217G","T6222A","C6243G","A6288G","A6323G","C6325T","G6333A","A6335G","T6358C","T6457A","C6483T","A6488C","G6490A","C6612T","A6613G","C6619A","C6660T","C6667T","-6700G","-6701C","A6703G","A6752C","A6770G","G6771A","C6777A","A6785C","C6792A","C6800G","A6805G","A6807G","C6810A","A6812G","G6819A","-6833T","-6834C","A6836G","A6839G","A6842G","C6843A","C6876T","A6884G","-6989G","-6990A","-6992A","-6994A","-6995C","-6996A","-6997A","-6998A","-6999C","T7015C","G7040A","A7100G","A7113G","A7126G","A7148C","A7151C","A7152C","A7154G","A7160C","A7210G","T7322A","C7328A","G7426A","G7441A","C7463T","G7524A","A7525G","A7626T","A7629G","G7633T","G7642C","C7651T","G7658C","A7676G","C7684T","A7688C","T7690G","A7714G","A7722C","A7741G","A7818G","A7903G","A7921G","A7947G","C7959T","T7968C","G7992A","C8048T","T8159G","A8170C","C8189A","A8196G","G8245A","T8277C","C8320T","T8375A","T8387G","G8441A","A8459C","T8595A","C8607T","A8608T","A8636T","T8646C","G8666C","G8759T","A8794C","A8870G","C8873A","A8886C","T8887A","C8904A","T8914G","G8935A","G8942T","C8952A","G8991A","C9041T","T9071G","T9073C","A9131G"],"INT":["E11D","K111R","I135V","G163H","S205A","S230N"],"RT-p51":["V60I","I142V","R211A","Q334L","K366R"],"RT-p66":["V60I","I142V","R211A","Q334L","K366R","S446A","N447S","R463K","L503I"],"gp120":["E4D","E34D","R35T","V37A","V56I","-106L","T107K","N108E","-123Q","Q145R","D159G","N160G","S161N","S162N","N201K","P210L","K212Q","A253V","T269I","I281-","-282Q","-283L","K300Q","S306D","T308-","Q309-","W310-","N311-","K312-","T313-","L314-","E315K","V317W","K318H","R322E","S323E","Y324V","F325R","P326K","N327E","-328L","-329K","P341L","T344A","-367Q","-368T","-369N","-384D","V396I","T416A","N420S","N432H","N433P","N434D","K436H"],"gp41":["L7M","L9I","R74K","Q108L","E109G","E110D","E119Q","S125G","N129Q","N140T","K172R","E215G","P219L","I222T","G230D","W286G","L296I","N298S"],"nef":["V85I","H89F","E98D","Y102H","E108D","L139F","E151A","D177E","K182Q","R188S","L191R","R198K","Q204K"],"p17":["K12E","R30K","N47D","R58Q","G62A","R76K","Y79F","Q112K"],"p24":["H12Y","A14S","H87Q"],"p6":["P23T","S24P","P25S","-26Q","Q28E","D32G"],"rev":["K14R","A15T","V16I","P67L","V104G","T108P","T114N"],"tat":["L3P","V39M","T40A","R53G","G61D","S62N","V67D","N80D","P84S","S87P"],"vif":["K63T","R93K","K167Q","Q178R","E179K","G182D"],"vpr":["G6E","H45Y","E55T"],"vpu":["Q2N","A15V","S24T","I33L","R35K","I43L","P73H"]},"labels":{"aa":"INT: E11D, K111R, I135V, G163H, S205A, S230N; RT-p51: V60I, I142V, R211A, Q334L, K366R; RT-p66: V60I, I142V, R211A, Q334L, K366R, S446A, N447S, R463K, L503I; gp120: E4D, E34D, R35T, V37A, V56I, -106L, T107K, N108E, -123Q, Q145R, D159G, N160G, S161N, S162N, N201K, P210L, K212Q, A253V, T269I, I281-, -282Q, -283L, K300Q, S306D, T308-, Q309-, W310-, N311-, K312-, T313-, L314-, E315K, V317W, K318H, R322E, S323E, Y324V, F325R, P326K, N327E, -328L, -329K, P341L, T344A, -367Q, -368T, -369N, -384D, V396I, T416A, N420S, N432H, N433P, N434D, K436H; gp41: L7M, L9I, R74K, Q108L, E109G, E110D, E119Q, S125G, N129Q, N140T, K172R, E215G, P219L, I222T, G230D, W286G, L296I, N298S; nef: V85I, H89F, E98D, Y102H, E108D, L139F, E151A, D177E, K182Q, R188S, L191R, R198K, Q204K; p17: K12E, R30K, N47D, R58Q, G62A, R76K, Y79F, Q112K; p24: H12Y, A14S, H87Q; p6: P23T, S24P, P25S, -26Q, Q28E, D32G; rev: K14R, A15T, V16I, P67L, V104G, T108P, T114N; tat: L3P, V39M, T40A, R53G, G61D, S62N, V67D, N80D, P84S, S87P; vif: K63T, R93K, K167Q, Q178R, E179K, G182D; vpr: G6E, H45Y, E55T; vpu: Q2N, A15V, S24T, I33L, R35K, I43L, 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E60G, K63I, D78E, R95S, R128K, V166I, S186N; vpr: T19A, I83V, I84M; vpu: S2T, D3N, V10A, V14L, I18V, L33V, V34I, E44K, R45K"}}}]},{"name":"F1_NODE_0000013","node_attrs":{"div":0.08567,"clade_membership":{"value":"F1"}},"branch_attrs":{"mutations":{"nuc":["C417A","C456T","C471G","C482A","T495C","C774A","-1444C","-1446A","-1455G","-1456C","A1733-","A1740G","G1826T","A2678C","A2713G","T3013C","G3508A","A4642G","C5412T","A5567T","C5704T","C5878T","T6024G","G6204A","-6212A","G6303A","-6340C","G6808A","T6835-","A7095G","T7150G","C8741T","G8970A","A8971G","C8978-","G9011C","C9017A","C9018G"],"INT":["T218I"],"RT-p51":["I195L"],"RT-p66":["I195L"],"gp120":["-109D","-110T","R150K","R316Q"],"p17":["Q28K","L46V","S54P"],"p24":["L15I"],"tat":["N64I"]},"labels":{"aa":"INT: T218I; RT-p51: I195L; RT-p66: I195L; gp120: -109D, -110T, R150K, R316Q; p17: Q28K, L46V, S54P; p24: L15I; tat: 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R20K, I112R, G193D; RT-p51: T39A, K174R, D248N, P345T; RT-p66: T39A, K174R, D248N, P294T, P345T, K452Q, V531I; gp120: -107K, N108E, R138N, I156L, S160N, I305V, L314V, E315-, V317R, R318-, -379N, N414S, N432Q, N433-, V468I; gp41: V2A, A6L, E110Q, I135L, G215E, R277G, T307I; nef: V11-, M20I, Q35R, A83G, K104Q, D174E, I194V; p1: N9H; p17: F79Y, V82I, K91R; p24: N183G; p6: S3N; p7: R26K; pro: I72T; rev: E68A, T93A, E95R; tat: L3P, T23N, R56H, D80N; vif: V31I, F39S, I51V, D78E, R95S, E117D, H127Y, I129V, Q178R, T180I; vpu: D3H, L4V, K31R"}},"children":[{"name":"AB485658","node_attrs":{"div":0.12284,"accession":"AB485658","clade_membership":{"value":"F1"},"country":{"value":"RO"},"date":{"value":1996.0},"Strain_name":{"value":"BCI_R07"},"LANL_subtype":{"value":"F1"}},"branch_attrs":{"mutations":{"nuc":["G474A","A660C","A661G","G703T","A785G","C890T","A1093C","A1125G","T1280A","A1308C","A1343T","G1404A","G1419A","G1443A","A1452G","G1487A","A1496G","G1503A","T1676C","C1706T","A1712C","-1733G","G1736-","T1741A","-1746A","-1747C","-1748T","C1782A","A1832T","C1853T","A2029G","T2129C","A2182G","T2215C","T2257C","A2293G","C2476T","G2580A","T2581C","A2629C","G2630A","C2635T","A2698G","G2714A","A2716C","A2803G","C2952T","C2968T","C2975A","C2978T","G3019A","C3067T","A3115G","T3225C","C3322T","T3345C","A3398G","A3592G","G3595A","G3679A","T3746C","G3920A","A3989G","T3991C","G4354T","C4357T","G4590T","G4642A","A4964G","T5197C","G5199A","T5356C","A5364G","G5365C","A5447G","G5507A","G5556A","A5564C","G5565A","C5568A","G5668A","T5684C","A5733G","T5772C","G5775A","G5784T","G5790A","C5792A","C5795A","T5799G","G5802A","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","G5861A","C5866T","C5869A","A5908G","A5935C","C6010T","T6023G","G6024A","C6026T","A6030T","C6110G","T6163-","A6164-","C6165-","T6166-","G6167-","A6168-","T6169-","A6173-","A6179-","C6184T","A6194G","-6198C","A6209C","T6241C","G6253A","A6266G","A6282G","T6285C","T6289G","A6320C","A6324G","T6325C","A6330C","A6336C","C6340T","T6457G","A6464G","G6572A","G6611A","A6628G","T6655C","A6684G","C6692T","A6695T","A6715C","T6722C","G6725A","T6733G","G6754A","A6765T","G6771A","A6789C","A6790C","A6806-","G6807C","-6809A","T6822G","-6832A","-6833G","-6834G","-6835G","A6837-","T6857C","T6938C","-6947A","-6948G","-6949T","-6950A","-6951G","-6952C","-6953A","-6954C","-6955G","-6971A","-6972G","-6973C","-6974C","-6975C","-6976C","-6977G","-6978A","-6979A","-6980G","-6981G","-6982A","-6983G","-6984T","-6985G","-6986T","-6987T","-6992A","-6993C","-6994G","-6995A","-6996G","-6997C","-6998C","-6999A","T7003A","C7006A","C7008A","C7020T","A7063C","A7148C","T7153-","G7161A","A7274C","A7301C","A7313T","T7325C","A7366G","A7504C","G7630T","G7631C","A7666C","C7692T","G7701A","G7702C","A7722T","T7774C","A7782C","T7796A","T7801G","A7818G","A7846G","G7947A","G7987A","A7998G","C8009A","G8269A","A8273G","C8277T","T8278G","G8279C","G8280T","G8283C","G8288A","G8427A","C8514G","T8567G","T8569C","A8570G","C8590G","G8595C","A8617G","A8662G","C8688A","T8740C","A8750G","G8761A","G8834A","A8892C","G8917A","C8921T","T8923A","A8935G","C8966T","G9026A","C9078T"],"INT":["A49T","I72V","S124G","G272V"],"RT-p51":["C162Y","V179I","E207T","A286V","P294T","V417A"],"RT-p66":["C162Y","V179I","E207T","A286V","V417A"],"gp120":["A3T","N5K","W57D","E59V","Q86E","D105N","M133I","N138G","K143R","V144A","H145Q","N157S","N159T","N161G","S162P","Y163L","R164N","L165N","I166T","N167S","N201K","K204E","E240K","K277R","H280Y","Q287H","Y290H","A291T","G293D","D294R","N304I","S306N","K312T","S335P","-365S","-366S","-367T","-373S","-374P","-375E","-376G","-377V","-378F","-380T","-381S","-382H","-383K","-384G","T385N","P389L","-436E","K474Q"],"gp41":["I4L","F8L","E121D","T130I","R133N","N140I","N160T","S165T","N166K","K172R","D232G","R324G","A325V","G326L","R327T","V329I"],"nef":["I10L","-11A","G29R","L58V","E64D","L76P","V85L","K92R","Q107R","H116N","I133T","G140E","K184Q","R192K","V194E","K198R"],"p17":["D47N","N109R","G123V"],"p2":["A7T","N9-","T10S","-12A"],"p24":["N121T","R132G","N193H","V230I"],"p6":["I21T","L35M"],"p7":["R11K","V13I"],"pro":["T12S"],"rev":["R17Q","A47T","A54E"],"tat":["K24R","G44D","Q63P"],"vif":["E2*"],"vpr":["R32K","I84T","R87A"],"vpu":["V21I","V26A"]},"labels":{"aa":"INT: 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E11D, N17S, S24N; RT-p51: E36D, T39I, T173A, E207K, K211A, L377V, A435I; RT-p66: E36D, T39I, T173A, D177E, E207K, K211A, L377V, A435I, K452E; gp120: A3K, V57D, -59T, N105S, -106A, D251N, K322R, E401G, N418R, E464Q, V468I; gp41: K77Q, D109K, D113E, I135L, E137T, A243T, G286W, S293G, F304L, N305D, A321I, L340F; nef: I16V, T23A, R178K; p17: M31L, S54T, Q69P, E93D, V94I; p24: T178S, E180D; p6: P23T, S24P, P25S, -26P, L35Q, K42R; pro: I72V; rev: T10A, E11D, V16I, S61D, L64V, P100S, G104V, E111G; tat: T58P, S62N; vif: R37K, F39S, E61K, I66V, E179G; vpr: G41N, N48H, I60L; vpu: A10T, 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K44I"}}}]},{"name":"F1_NODE_0000028","node_attrs":{"div":0.09023,"clade_membership":{"value":"F1"}},"branch_attrs":{"mutations":{"nuc":["A256-","-280G","G404A","G424A","A426C","G508A","G585A","T586C","G641C","A678G","T748C","C767T","A959G","C1060A","G1498A","G1588A","C1730T","A1835G","A1849G","C2476T","T2499C","G2524A","C2527T","T2602G","C2605T","C2613A","A2615C","A3088G","G3100C","A3241T","C3857T","C4321A","A4407G","C4444T","A4781G","G5179A","A5225G","T5384C","A5699G","C5763T","A5863-","G6029A","-6171C","C6183A","-6203A","-6216A","T6242A","C6278A","T6337-","G6339-","-6689A","-6691A","C6745T","T6794A","A6812G","G6814A","T6829C","-6833C","-6995G","-6996A","-6999C","C7064A","A7107G","A7148C","T7150G","A7161G","C7463A","A7669G","T8205C","C8460A","A8540G","C8590G","C8595G","A8886C","C8913T","A8918G","C8921T","A8922G","A8924G","A9007G","-9014T","A9019T","-9041A","-9042G"],"INT":["K211R"],"RT-p51":["V135T","D169E","T173K","K174Q"],"RT-p66":["V135T","D169E","T173K","K174Q"],"gp120":["L106A","-112T","S130T","N159E","S160T","N161-","A291T","L314I","K320E","N432Q","-436T"],"gp41":["M4I","I301T"],"nef":["A83G","L85V","K182Q","I194V"],"p17":["R30K","M31L","V84T","T115A"],"p2":["T12V"],"p24":["L6P"],"p7":["R11K","R41K"],"pro":["I13V"],"tat":["L3P"],"vpr":["H77Q"],"vpu":["K31R"]},"labels":{"aa":"INT: K211R; RT-p51: V135T, D169E, T173K, K174Q; RT-p66: V135T, D169E, T173K, K174Q; gp120: L106A, -112T, S130T, N159E, S160T, N161-, A291T, L314I, K320E, N432Q, -436T; gp41: M4I, I301T; nef: A83G, L85V, K182Q, I194V; p17: R30K, M31L, V84T, T115A; p2: T12V; p24: L6P; p7: R11K, R41K; pro: I13V; tat: L3P; vpr: H77Q; vpu: K31R"}},"children":[{"name":"MG365764","node_attrs":{"div":0.12151,"accession":"MG365764","clade_membership":{"value":"F1"},"country":{"value":"BR"},"date":{"value":2012.0},"Strain_name":{"value":"12BRRJPR51"},"LANL_subtype":{"value":"F1"}},"branch_attrs":{"mutations":{"nuc":["A14G","C151A","A152-","C281-","A303T","A418G","A425G","C435T","G455A","T495C","C503A","C525T","A571T","G595T","A604G","G650A","C662T","C681A","A735G","C765T","T861G","G989A","A998G","A1060G","C1118T","G1256A","G1388A","A1415T","C1439A","A1448G","A1464C","A1525G","A1526G","A1536C","C1541A","A1545C","C1556A","A1589G","C1656A","G1691A","G1697A","G1720T","A1733G","T1752C","T1783A","A1839G","T1864C","C1903A","A1906G","C1913T","A1966G","T1986A","T1999C","T2013C","G2038T","C2044T","G2173A","A2212G","C2485T","C2500A","C2684A","A2713G","A2716C","A2743C","A2755G","G2837A","G2914A","A2925G","G3015A","A3079G","C3095G","G3221T","C3224T","G3250A","A3251C","A3264G","G3307C","C3415T","G3442A","C3492T","T3517C","C3567T","G3643A","T3644A","A3766G","A3808C","T3820C","G3834A","G3859A","A3877G","A3913G","G3925A","T3962C","A4076C","T4085C","A4112G","C4147T","G4150A","C4247T","G4255A","A4376G","G4622A","A4642G","A4695G","G4727A","G4735A","G4737A","G4864A","C4890T","C4902T","T4914C","A4937C","A4964G","A4970G","A4993C","A5058C","A5065G","G5128A","G5167T","G5185A","T5203C","G5226C","T5313C","T5336G","T5339C","T5356C","G5359C","G5382T","T5391C","T5479C","C5481A","A5548C","A5557G","G5565A","C5578A","T5602C","G5619A","A5632T","G5647A","T5684C","A5738G","A5806G","G5839A","A5845G","A5866C","A5957C","T5986C","T6010C","A6023T","A6031T","A6045G","T6134C","T6155C","A6167G","A6168C","-6174A","-6175T","A6179G","-6180C","A6186C","T6187C","A6195G","-6201A","C6204G","-6215G","G6220T","A6234T","T6252C","A6254G","C6255A","G6277A","T6285A","T6301C","A6311C","A6327G","A6330G","A6335G","G6336A","-6337A","-6339C","-6340A","T6403A","A6448G","A6464G","A6471C","G6475A","C6501T","G6532A","G6566T","A6568G","A6576G","A6578G","G6611A","C6618A","T6655C","C6667T","A6685G","-6693G","T6694G","T6760C","G6767A","C6777A","C6779A","G6797C","A6799C","-6821A","C6822A","T6823G","-6834A","C6925T","-6986A","-6987A","-6988T","-6989A","-6998T","A7032G","G7065A","A7097C","A7100G","T7105C","T7114C","A7152G","T7162G","A7234G","G7269A","A7275G","A7281C","G7375A","A7428G","G7552A","C7553A","T7609C","T7624C","T7627G","G7633A","T7636A","C7678T","G7688C","G7701A","A7706C","A7710G","G7714A","G7717A","C7742A","A7744G","A7747C","C7755A","G7759T","A7947G","G7956A","A7995G","C8005A","C8044A","G8122A","G8134A","T8235G","G8243T","A8294C","G8323T","G8329A","A8341G","T8348G","A8352C","A8353G","C8415A","T8451C","A8469G","A8472T","A8537C","G8666C","C8684T","T8759G","G8787A","A8851T","A8882G","C8907T","G8917A","A8954G","-9033G","-9040G","C9075T"],"INT":["E11D","R20K","M50I","I101L","I113V","I201V","G283S"],"RT-p51":["D123E","Q197K","E207D","D248N","K277R","R307K","Q334E","A376S","T386P","K390R","E404D"],"RT-p66":["D123E","Q197K","E207D","D248N","K277R","R307K","Q334E","A376S","T386P","K390R","E404D","A466V","S491L","L517I"],"gp120":["-3D","E4N","N5-","K35Q","N57F","E59N","N64S","N105A","N108T","-109A","-110N","-111T","-113N","-114S","-115N","-116S","-117N","-118S","-119T","-120L","-121K","-123D","Q127L","M133T","T134D","V144E","I153L","D183E","K204E","N206T","T216I","A238S","E240G","D241G","I242V","A253T","T255N","S280R","T292E","G293R","D294I","V305I","T308E","Q309K","E315H","K322R","S323K","P326H","D365-","T366-","N369-","-378N","-379N","-380T","-381E","-382S","-383N","K393R","R404K","I415L","T416A","N418S","N433S","N435G","T437S","K474R","Q476P"],"gp41":["M24I","N42S","L84I","Y108Q","D109E","E129Q","R133K","I135L","E136G","Q147K","E148D","A151E","L152F","E215G","R218K","K231R","D247E","V311G","G314W","N331H","L340F"],"nef":["K4R","P25T","I43V","T44S","E65D","E108D","F139L","D149N","Q170L","R192Q"],"p1":["H9N"],"p17":["K28R","S54P","R58Q","Y79F","Q90R","Q116K"],"p2":["S5R","V13L"],"p24":["I2V","H12Y","S44A","T110S","S225G"],"p6":["S14I","S24P","L35Q"],"p7":["K20R","I24L","N27H"],"pro":["K14R","D35E","I36M","P39S","L63H","I72T"],"rev":["T10A","E11D","R17K","R53S","G92R","T93A","G96R"],"tat":["E2D","Y35Q","T58P","S61G","L68I","N80D","G83S"],"vif":["N19S","R37G","R50K","V51I","R93K","Y110H","E117D","Q136P","K158Q","K160R","R181K"],"vpr":["E21D","S41A","I70T","I84T","R85P","A93S","S96P"],"vpu":["I9L","V14I","V26A","K44R","M71V","D78N","N80D"]},"labels":{"aa":"INT: E11D, R20K, M50I, I101L, I113V, I201V, G283S; RT-p51: D123E, Q197K, E207D, D248N, K277R, R307K, Q334E, A376S, T386P, K390R, E404D; RT-p66: D123E, Q197K, E207D, D248N, K277R, R307K, Q334E, A376S, T386P, K390R, E404D, A466V, S491L, L517I; gp120: -3D, E4N, N5-, K35Q, N57F, E59N, N64S, N105A, N108T, -109A, -110N, -111T, -113N, -114S, -115N, -116S, -117N, -118S, -119T, -120L, -121K, -123D, Q127L, M133T, T134D, V144E, I153L, D183E, K204E, N206T, T216I, A238S, E240G, D241G, I242V, A253T, T255N, S280R, T292E, G293R, D294I, V305I, T308E, Q309K, E315H, K322R, S323K, P326H, D365-, T366-, N369-, -378N, -379N, -380T, -381E, -382S, -383N, K393R, R404K, I415L, T416A, N418S, N433S, N435G, T437S, K474R, Q476P; gp41: M24I, N42S, L84I, Y108Q, D109E, E129Q, R133K, I135L, E136G, Q147K, E148D, A151E, L152F, E215G, R218K, K231R, D247E, V311G, G314W, N331H, L340F; nef: K4R, P25T, I43V, T44S, E65D, E108D, F139L, D149N, Q170L, R192Q; p1: H9N; p17: K28R, S54P, R58Q, Y79F, Q90R, Q116K; p2: S5R, V13L; p24: I2V, H12Y, S44A, T110S, S225G; p6: S14I, S24P, L35Q; p7: K20R, I24L, N27H; pro: K14R, D35E, I36M, P39S, L63H, I72T; rev: T10A, E11D, R17K, R53S, G92R, T93A, G96R; tat: E2D, Y35Q, T58P, S61G, L68I, N80D, G83S; vif: N19S, R37G, R50K, V51I, R93K, Y110H, E117D, Q136P, K158Q, K160R, R181K; vpr: E21D, S41A, I70T, I84T, R85P, A93S, S96P; vpu: I9L, V14I, V26A, K44R, M71V, D78N, 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N17T, L45I, I72V, F100Y, T119P, I161S; RT-p51: M39T, C162H, G196E, E207Q, K211R, A286T, Q334L, M357K, L377M, S379G; RT-p66: M39T, C162H, G196E, E207Q, K211R, A286T, T297A, Q334L, M357K, L377M, S379G, R461K, L469I, Q483H, S491P, K527N, K530R; gp120: -3T, E4G, A37V, V57W, E59K, K69N, N105S, -107K, N108E, -123P, G124D, V137L, N157-, N159G, S160T, N161G, -162N, K204S, K212R, E240G, D251N, S280T, I281L, T308S, E315G, K318R, H324Y, P326H, -328A, K329-, S336P, G361W, N364S, -367E, -368F, -370D, -371S, E401G, N432Q, -436T, T437N, N446E, K448R, Q476R, K479Q; gp41: M54L, Y108Q, D109E, E110Q, E113Q, S125N, E129N, E130D, R133K, I135L, E148D, A156T, D163N, S192A, N195R, I210L, A243S, I270T, R277G, E280Q, S293L, L345Q; nef: G3S, K4N, I16V, M20I, T23A, A27E, E28G, G29-, E38G, S45N, A50D, I101T, K104Q, Q107K, Q170L, E176G, R178G, V180T, K184V, K204Q; p17: K18R, I35V, Y79F, H89Q, V94I, T115K, Q117P, A118V, K122Q; p2: N9S, T12V, V13L; p24: L6P, V11I, H12Y, S33N, S44A, R154K; p6: S24P, L35Q, A39T; p7: S4G, R10K, I12T, I24L, K26R; pro: K14G; rev: T10E, E11D, L13I, R17K, Y28P, S61E, E68A, E95G, G98A, E111A; tat: R29K, Y35H, T58P, P59H, L68P, I74T; vif: G37R, F39C, E60K, A62D, R93K, I124L, K128R, K158Q, Q167K, M189I; vpr: E17Q, I84L, V89I; vpu: D3Y, G72E"}}},{"name":"MG365768","node_attrs":{"div":0.13815,"accession":"MG365768","clade_membership":{"value":"F1"},"country":{"value":"BR"},"date":{"value":2011.0},"Strain_name":{"value":"11BRRJPR90"},"LANL_subtype":{"value":"F1"}},"branch_attrs":{"mutations":{"nuc":["T95C","G206A","A263T","-304T","-305T","A317G","G455A","T473C","T495C","A497G","C531T","A541C","A562G","A579C","A604T","A607G","G629A","G641A","G651A","C662A","A663G","A680G","C684A","A697C","C698A","A700C","A740G","G743A","T771G","T773C","A810G","T852A","G935A","C944T","A945G","C947T","T1040C","T1064G","C1094T","G1173A","T1174C","A1190C","C1235T","A1271G","G1277A","G1278A","G1279A","A1293T","C1362T","G1388A","A1442G","A1445G","A1449C","G1455A","A1586G","G1588A","T1681C","A1687G","G1691A","C1692A","T1728A","G1731A","-1746C","-1747C","-1748A","C1749T","T1754-","C1755-","C1756-","G1784A","A1819G","C1833A","G1848A","G1852A","A1861G","C1865T","T1954G","C1985A","A1993T","A2012G","G2038A","G2074A","A2197G","A2212G","A2215G","T2237A","A2241G","C2263T","A2293G","G2311A","G2422A","C2503T","A2560G","A2578G","C2596T","A2612G","A2616G","G2686A","A2716G","A2728G","A2764G","C2839A","A2884G","T2983C","T3002C","A3028G","G3058A","A3080C","G3085A","G3094A","G3169A","A3220T","G3307T","G3340A","C3346A","A3448G","A3481G","A3490G","G3494A","G3523A","G3529A","C3567T","G3574A","A3583G","T3644A","T3668C","A3761G","A3770G","G3796A","G3805A","A3808T","A3825G","T3853C","T3909A","A3937G","T3943C","C4047A","C4058A","G4145A","T4152C","C4180T","G4183A","A4225G","C4321T","G4388T","G4475A","G4549A","A4564G","G4622A","G4637A","G4673A","A4692C","T4702A","T4703C","C4715T","G4719C","T4742C","A4765G","A4769T","C4827T","A4845G","A4850G","G4871C","A4878G","C4898T","A4911C","T4912G","T4914C","T4932A","A4952T","C4965T","G4969A","A5015G","T5043C","G5049T","T5072C","C5115T","A5121G","G5137A","A5187C","G5212A","A5225G","C5237T","G5257A","T5260C","A5293G","T5294C","C5306T","T5336A","T5384C","T5403G","C5445A","T5482C","A5491G","G5496A","G5538A","C5542T","G5543C","A5548G","T5567A","A5568C","C5584T","C5612T","T5614A","A5626C","C5636T","T5641C","A5644G","A5652G","C5663T","G5668A","G5671A","G5673A","A5699G","T5727C","G5730T","A5738G","G5747T","A5751G","A5793T","G5802A","A5806G","G5839A","A5856G","-5861G","A5866C","C5884T","C5916A","C5917G","T5920C","C5929T","T5944C","A5958G","T5980C","T6010C","G6020A","A6022G","A6065G","T6085C","C6115T","T6134A","T6151G","G6170T","C6172G","-6174G","-6175T","-6180C","T6187C","G6188A","C6190A","C6196A","-6198A","A6200G","C6209T","G6220T","C6221T","G6227A","C6233A","T6241C","A6251G","T6252C","G6267C","G6274A","C6278A","A6304G","A6320C","T6337C","-6340T","T6341A","C6343T","G6392A","T6393C","A6430G","G6451A","G6458A","T6460C","A6465C","C6469T","G6490C","G6573A","G6611A","A6616G","C6618A","A6628G","G6638C","C6693G","A6706G","G6716A","G6754A","T6769C","C6777T","G6793A","G6809A","A6818G","-6821G","-6834T","A6854G","C6856A","T6857C","G6871A","T6932G","T6946C","-6989A","-6990A","-6991C","-6992A","-6993C","-6994T","-6995G","-6996A","-6997T","-6998A","-6999A","-7000G","-7001A","-7002A","G7004A","-7005T","G7026A","A7036G","T7039C","G7040A","A7060G","A7095G","C7127A","T7147C","A7152G","T7153A","G7160T","A7161G","T7162C","A7219G","G7256A","G7269C","A7297C","G7309C","T7325C","C7328A","T7359G","G7364T","C7365T","G7369C","A7373G","A7376G","T7444C","C7463A","A7504G","A7533G","G7534A","C7625T","G7628A","G7630T","G7631A","A7632T","C7678T","T7690A","G7709C","G7720A","A7722G","A7732C","G7759A","A7782G","C7792A","A7818G","A7921G","A7929C","A8019G","A8029C","C8092A","C8103T","G8109A","G8130A","C8145T","C8146T","T8153C","A8154T","T8155C","G8170A","C8171T","A8172T","A8180G","C8221T","A8222G","C8223T","A8228G","G8234A","T8235C","G8255A","G8354A","A8364C","T8375G","C8386A","T8387A","A8390T","G8432A","G8441A","G8479A","T8492C","A8519G","G8534A","C8552T","C8651T","A8652G","G8654T","A8656G","A8662G","T8675C","A8701T","A8719G","T8770A","C8810T","C8835T","G8868C","A8869C","A8892C","C8904A","G8905C","C8978A","C8989T","A8991G","G8994C","A9007G","-9009G","A9019T","C9028T","C9068T","T9074-","C9075-","G9076-","C9077-","C9078-","T9079-","G9080-","T9081-","A9082-","C9083-","T9084-","G9085-","G9086-","G9087-","T9088-","C9089-","T9090-","C9091-","T9092-","C9093-","T9094-","A9095-","G9096-","T9097-","T9098-","A9099-","G9100-","C9102G","A9106-","T9107-","T9108-","T9109-","G9110-","A9111-","G9112-","C9113-","C9114-","T9115-","G9116-","G9117-","G9118-","A9119-","G9120-","C9121-","T9122-","C9123-","T9124-","C9125-","T9126-","G9127-","G9128-","C9129-","T9130-","A9131-","G9132-","C9133-","T9134-","A9135-","G9136-","G9137-","G9138-","A9139-","A9140-","C9141-","C9142-","C9143-","A9144-"],"INT":["E11D","N17S","L45Q","A91E","Q95K","A124T","V126A","A205S","V234I","G283S","D288N"],"RT-p51":["S48T","K49R","T173A","K174R","D248E","A297T","I329L","E404D"],"RT-p66":["S48T","K49R","T173A","K174R","D248E","I329L","E404D","V467I","S491L","L517I","I556V","I559V"],"gp120":["N1S","-3A","E4D","T21K","K35R","V56M","V57L","N71D","L94I","-107S","-109A","-110T","-111N","-112T","-113N","-114S","E122-","A125T","Q127K","M133A","R138T","Q142K","I156L","S160A","N161T","-162E","V180T","D202N","K204T","K212N","A253T","T255N","E262Q","S280R","A288T","T308V","A319T","K322G","S323A","P326L","N334E","S335P","S360A","D365N","-367D","-368K","-370I","-371T","T385-","R391Q","V396I","N414S","L425I","N433R","-436C","V468I","K472T","E481D"],"gp41":["F8L","L9I","M19R","A21L","M24V","T25A","K77R","D109N","E110M","E136Q","N140S","E143D","N160S","D163E","K172R","H209P","N239S","L242F","F263L","A267V","R269K","R276K","A281V","Y284L","Q290L","S293G","T307V","I309V","V311T","V318I"],"nef":["S8R","A15E","S46N","K104D","K105R","Q107R","Y120F","N126S","F143Y","E176P","K184Q","R188T"],"p17":["S54P","P66S","Q69P","K76R","I82L","Q90L","K91R","E106K","K110E","Q117K","D121A","K122T"],"p2":["N9H","A11-"],"p24":["S14A","I27V","S41T","M68I","T72A","V148T","G183N","T188S"],"p6":["L1P","N3S","P5T","F17I","G18R","N47S","Q52K"],"p7":["R41K"],"pro":["T12K","G17E","L63I","E65D","I72V"],"rev":["S8N","T10Q","Y18T","S61R","H82N","P100S","I102T","S103P","A108I","E111G"],"tat":["L3P","D9E","W36R","T39A","R56S","T58A","I64N","P70S","I74L"],"vif":["M29I","K36Q","F39Y","E45Q","E60G","E61D","I87V","R95S","I98V","I109R","Y110H","S116T","K122N","H127Y","A155S","P177S","K179E","R184K"],"vpr":["A4V","E6G","N28T","S41G","H45Y","I63M","H77Q"],"vpu":["S2L","D3N","I7L","A10V","I13V","A19V","V21I","V22I","K31R","R41S","K44R","R47I","M71V","D78N"]},"labels":{"aa":"INT: E11D, N17S, L45Q, A91E, Q95K, A124T, V126A, A205S, V234I, G283S, D288N; RT-p51: S48T, K49R, T173A, K174R, D248E, A297T, I329L, E404D; RT-p66: S48T, K49R, T173A, K174R, D248E, I329L, E404D, V467I, S491L, L517I, I556V, I559V; gp120: N1S, -3A, E4D, T21K, K35R, V56M, V57L, N71D, L94I, -107S, -109A, -110T, -111N, -112T, -113N, -114S, E122-, A125T, Q127K, M133A, R138T, Q142K, I156L, S160A, N161T, -162E, V180T, D202N, K204T, K212N, A253T, T255N, E262Q, S280R, A288T, T308V, A319T, K322G, S323A, P326L, N334E, S335P, S360A, D365N, -367D, -368K, -370I, -371T, T385-, R391Q, V396I, N414S, L425I, N433R, -436C, V468I, K472T, E481D; gp41: F8L, L9I, M19R, A21L, M24V, T25A, K77R, D109N, E110M, E136Q, N140S, E143D, N160S, D163E, K172R, H209P, N239S, L242F, F263L, A267V, R269K, R276K, A281V, Y284L, Q290L, S293G, T307V, I309V, V311T, V318I; nef: S8R, A15E, S46N, K104D, K105R, Q107R, Y120F, N126S, F143Y, E176P, K184Q, R188T; p17: S54P, P66S, Q69P, K76R, I82L, Q90L, K91R, E106K, K110E, Q117K, D121A, K122T; 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L84I, I135V, G163H, F181L, T206S, I218T, I251L, D270H; RT-p51: E6N, K20R, T35K, T39A, D121Y, K122E, I142V, C162Y, T173V, T200A, I202V, K275Q, A297T, G333E, Q334H, M357I, L377M, I382L, K390R; RT-p66: E6N, K20R, T35K, T39A, D121Y, K122E, I142V, C162Y, T173V, T200A, I202V, K275Q, A297T, G333E, Q334H, M357I, L377M, I382L, K390R, T470M, Q480H, E492K, I559V; gp120: V10I, K18R, N52S, V56I, V57E, E59G, D66N, N71D, T78E, N102S, -107I, N108Y, -109K, -110N, -112T, -114T, -115H, -116N, -117S, -118T, -119L, -120K, -121L, -123P, I126V, H145Y, K150R, N159G, N161G, -162E, H167N, K199R, D202N, K212R, E240G, I249M, N272S, S278G, K300Q, T308I, E315T, Q316R, K318R, H324Y, P326D, -328N, K329T, T330K, -367V, -368S, -369N, -370D, -371T, M398L, N432S, N433S, -436E, V468I, K479Q; gp41: L7V, F8L, T25A, R46K, G83S, S101T, N105S, Q108Y, D109N, E110D, D113E, E129D, R133K, I135L, E136Q, N140S, K144R, Q147K, A151E, L152F, A156T, D163N, N166S, V187F, A189T, V197A, L204V, T208I, I210T, S212N, D217G, K231N, D232G, A243T, L244V, H259Q, F263L, A267V, A268V, D272E, S293G, K297R, I319L, V329F, L345I; nef: I16V, T23A, P24R, A26R, G29R, E38S, R39N, N51T, L85M, Q125G, D149S, K155E, N157T, S169N, Q182R, K184E, Y203F, D205S; p17: A15Q, D47N, G62S, S72T, Y79F, A83V, K95R, E106K, K110E, Q112K, D121A; p2: T12V, V13L; p24: L6I, S14P, L15I, I27V, S44A, S225G; p6: L1F, A12E, E19-, I21K, T22I, P23T, S24P, P25S, -26P, K27R; p7: K3R, Q9P, R11K; pro: K20R, D35E, P39Q, I93L; rev: S8R, K14R, V16I, R17K, I52V, S61D, L78I, H82N, I83L, Q91E, A108S, E111G; tat: L3P, Q17K, T19S, S62N, V69I, K71E, P73S, S75P, A77T, T82A; vif: F44Y, E61K, K63E, L64I, I66V, D78E, G101D, I109L, Q167K; vpr: H45Y, N48G, I60L, V89G; vpu: Y3N, A11E, V21I, Y27F, R35K, 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N183A; p6: P5T, F15L, R16M, T23A, Q30P, K31R; p7: M1V, N8P, Q9R, R11T, I12-, K47L; pro: L10I, K20R, K43T, F53I, I54V, K57R, V82A; rev: A15T, I59F, S62A, L67R, N84S, G90E, P107L; tat: E2D, I39T, S61N, L74I, G79R; vif: S95R, S116A, N122H, T155A, V166L, K181T; vpr: Q8H, S28T, P37V, I61T, I63T, A93S; vpu: S8G, V26A, I28L, L33F, K38R, 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N9H; p17: I34L, E93D, Y132F; p2: I13V; p24: E71D, E180D; p6: S3T, E20G, Q26R, Q30L, K31T; p7: R11K, I12T, I24V, K26R, D48E; pro: L10I, D35E, M46I, K55R, K70R, A71V, I85V, L90M, I93M; rev: E10Q, R17S, T32K, R53C, E54Q, S61R, D88N, E94D, G96R, S106H, V109I, E111G; tat: K29L, F32Y, R56P, I64L, H78Q; vif: M29K, F39V, T47N, H48N, R63K, D78E, N122H, K158R, V166I, Q178R, M189I; vpr: P5S, E17Q, S28G, P37I, Y45H, E58K, Q77R, T84N, R85P; vpu: R41N, E44K, 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K18R, R30K, V82I, K91R, A119E, N124K, S125G, Q127P; p2: N9K, -12V; p24: I6L, A14P, S16T, L83V, H87Q, M96I, S120G, K203R, G225S; p6: P5T, I21K, Q30P, D32E, *50W, S51L; p7: I12V, K26R; pro: L10M, K14R, H69Q; rev: D9E, P31S, G65D, L103R, S106H, P107T, A108T; tat: R7K, T23N, Y26F, F32Y, V36A, K40T, R57K, S70P, P77L, K85E, P87S; vif: G37R, K63E, I66V, W70K, S95H, Y110H, H127R, S130R, I159R, K176E, S186N; vpr: Q3R, T49N, I63T; vpu: Q2T, L7S, A16G, S24T, F27L, L34R, R35K, Q36E, R37K, K38R, D40E, D44N, R47A, M67R, 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p7: R41K; vif: I31T; vpu: L64Y"}},"children":[{"name":"KJ671535","node_attrs":{"div":0.138,"accession":"KJ671535","clade_membership":{"value":"CRF72_BF1"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_MG004"},"LANL_subtype":{"value":"CRF72_BF1"}},"branch_attrs":{"mutations":{"nuc":["T45C","A50G","A66-","A67-","T154C","C161T","G167A","G407A","A410G","A455G","C456T","G508A","A562G","G579A","A599G","A686G","G716A","C749G","A815G","G818A","G821A","G822T","A833C","T852G","A932G","T988C","T992G","T1013A","G1019A","T1040C","A1089G","T1100C","C1105A","G1192A","A1205G","G1313A","A1329T","T1344A","A1359T","T1403C","G1419A","A1449C","A1474G","A1475G","C1556A","T1559C","A1562G","A1567G","A1619T","G1640A","C1670T","G1673A","T1676C","C1714A","T1722C","A1765G","A1770G","A1771G","G1773A","C1826T","A1968G","G2074A","C2098T","C2105T","A2154G","G2155A","A2212G","G2224A","A2311G","A2380G","G2392A","A2419G","T2425C","T2458C","T2464C","C2467T","C2575T","T2597C","T2602G","T2659C","T2737G","G2837A","C2839T","C2845A","A2846T","G2914A","T3049C","C3067T","G3127T","A3130G","A3205G","G3307A","G3431T","A3449T","A3450T","G3477A","C3492T","T3545A","A3571G","A3607C","A3674C","T3695A","G3755A","A3770G","G3866A","A3877G","C3892A","G3907A","A4057G","A4107C","G4174A","C4195T","A4243G","A4303G","A4376G","A4424G","G4495A","A4531G","A4535C","C4543G","T4678C","C4690T","G4735A","G4835T","A4869C","G4870A","C4871T","T4976A","A4988G","G5024A","A5033C","C5034T","C5038T","G5040A","A5046C","T5062G","A5119G","G5131A","A5137G","A5159G","T5170C","A5173G","G5179A","T5197C","G5212A","T5214C","C5227T","T5228C","A5248G","G5257A","A5277T","A5285T","C5306T","A5335G","T5354C","G5437C","A5446C","C5451T","A5462G","G5463A","T5475C","A5480T","C5490T","T5492C","A5545C","A5547C","G5557C","G5565A","C5569A","T5577G","T5584C","G5599A","C5602T","A5607G","C5612A","T5617C","T5620G","A5621C","T5626G","A5628G","T5654G","A5710G","A5734C","A5790G","C5827T","A5861-","C5862-","A5863-","A5866C","A5869C","T5932C","T5951C","T6024A","G6028A","G6029A","A6031G","A6095G","T6134C","T6160C","C6165G","A6167-","A6168-","T6169-","-6180C","A6185G","A6186C","A6191C","A6192C","A6194C","T6196A","C6198A","-6201G","G6203A","-6205C","-6207T","-6213G","-6214G","G6224A","A6254G","C6278T","A6279T","C6287T","C6293A","T6294C","T6298C","G6303A","A6326G","T6328A","A6330G","A6332G","C6347T","T6358C","G6466A","A6565G","G6575A","A6576G","T6641C","-6688T","-6689A","-6690T","-6691A","-6692C","-6693A","A6695T","C6758T","G6771A","A6786C","T6787A","A6788C","A6790C","A6796G","A6797G","A6806G","A6807G","-6809A","A6812G","C6822A","-6830C","-6831C","-6832C","-6833A","T6835C","A6836G","A6837C","T6838A","C6843T","T6846A","A6848-","A6849-","A6850-","A6854G","T6888C","A6913G","C6919T","A6945C","-6947G","-6948G","-6949C","-6950A","-6952A","-6953G","-6954T","-6955G","-6956G","-6957T","-6958C","-6959A","-6960A","-6961T","-6962G","-6963G","-6964C","-6965A","-6966C","-6967T","-6968C","-6969T","-6970C","-6971A","-6972C","-6973T","-6974A","-6975A","-6976T","-6984C","-6985C","-6987C","G6989A","-6990T","-6994T","-7001A","-7002A","A7005G","A7021C","C7084T","A7085G","A7095G","C7101A","G7107C","T7123G","T7144G","T7150G","C7164A","C7201T","A7234G","A7276G","A7279G","A7299G","C7393T","A7398T","C7553A","A7620G","C7625G","A7629C","G7642A","G7660A","A7669G","A7687T","A7689C","A7692T","G7753A","T7801C","A7818G","A7847G","G7862A","C7993G","A8007G","C8010G","A8029G","C8047T","G8070C","G8098A","A8104G","T8156G","C8167T","G8201T","C8202T","G8204A","G8255A","T8277G","C8294A","C8336G","A8341G","G8404A","C8406A","A8408G","T8426C","A8484-","C8485-","-8490T","C8491T","T8505C","C8543A","A8643G","C8666T","C8676T","C8684T","A8701T","G8798T","T8829A","C8831T","T8832C","C8869T","A8870G","G8875A","G8885A","G8888A","C8916G","T8918G","T8923A","G8968-","A8969-","G8970-","T8972-","T8973-","T8974-","C8975-","G8982A","G8983A","A8984-","C8985-","T8986-","T8987-","T8988-","C8989-","C8990-","G8991-","G8995C","G8996T","T9000A"],"INT":["V31I","S39R","K111T","I201V","I217V","N254H"],"RT-p51":["P4S","K20R","D169E","F214L","D248N","D250E","S251C","E344D"],"RT-p66":["P4S","K20R","D169E","F214L","D248N","D250E","S251C","E344D","A446S","K452L","R461K","A466V","L484I","K527Q","S534T","A554T","I559V"],"gp120":["T3D","E4N","K5-","Y33H","V57E","E59K","I81V","T104-","E122-","G124-","T125-","T134A","Q142L","H145Y","L147T","R150K","N159-","N161-","D241S","S263P","I281L","D294A","H302Y","S306N","R307G","N311T","N312H","K318G","K320E","S323Y","T330-","N334D","M345T","K361R","N364T","D365G","-367V","-368V","-370G","-371T","-372L","-373T","-379A","-381I","-382T","-383N","D384G","I411V","N414S","T416N","N418T","N432K","N433D","T437N","K482R"],"gp41":["V24M","Q32L","L84I","K106R","Q108E","D109A","D113E","D129T","E130V","K172R","I182V","V187I","D230E","E235G","S256T","H258R","I281V","W285G","A300F","V301I","V318I","A325G","H331N","L345V"],"nef":["R21K","T48F","C55R","E63D","V85L","I101V","Y120F","E152D","C163S","Q170L","E176L","R178K","M182I","H192E","V194K","D205N"],"p17":["R58K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V31I, S39R, K111T, I201V, I217V, N254H; RT-p51: P4S, K20R, D169E, F214L, D248N, D250E, S251C, E344D; RT-p66: P4S, K20R, D169E, F214L, D248N, D250E, S251C, E344D, A446S, K452L, R461K, A466V, L484I, K527Q, S534T, A554T, I559V; gp120: T3D, E4N, K5-, Y33H, V57E, E59K, I81V, T104-, E122-, G124-, T125-, T134A, Q142L, H145Y, L147T, R150K, N159-, N161-, D241S, S263P, I281L, D294A, H302Y, S306N, R307G, N311T, N312H, K318G, K320E, S323Y, T330-, N334D, M345T, K361R, N364T, D365G, -367V, -368V, -370G, -371T, -372L, -373T, -379A, -381I, -382T, -383N, D384G, I411V, N414S, T416N, N418T, N432K, N433D, T437N, K482R; gp41: V24M, Q32L, L84I, K106R, Q108E, D109A, D113E, D129T, E130V, K172R, I182V, V187I, D230E, E235G, S256T, H258R, I281V, W285G, A300F, V301I, V318I, A325G, H331N, L345V; nef: R21K, T48F, C55R, E63D, V85L, I101V, Y120F, E152D, C163S, Q170L, E176L, R178K, M182I, H192E, V194K, D205N; p17: R58K, K76R, V82I; p2: N9H; p24: I6M, A31S, S41A, V86A, H87Q, M96I, S120G, P125Q, R154K, T200S, L205M, T210S, V230I; p6: A12E, F15L, E29G, K31G, D32N, *50W; p7: K3R, S4G, K34R; pro: K57R; rev: E10D, N11T, K14N, R17K, L21R, Q49E, T54K, N61D, P67S, Q74H, D84N, N86D, L103R, P107S; tat: A21P, N24P, K29R, Q35L, I39T, R57H, D61H, H65N, S70P; vif: A35V, R50K, Q83H, S95H, S130R, A151V, A152T, I154L, I159R, Q178R, G182D, K184R; vpr: T19A, V37A, I61L, Q77R; vpu: Y5A, L7V, A16G, R35G, I43L, V65M, 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D78N"}}}]}]}]},{"name":"results/subtype_trees/CRF66_BF1.nwk","node_attrs":{"div":0.10112,"clade_membership":{"value":"CRF66_BF1"}},"branch_attrs":{"mutations":{"nuc":["C160T","T377A","G407A","C482T","T495G","A507C","C510A","C583T","G595T","A619G","A620T","A645C","G656A","A669C","A672C","G678C","C700A","A705-","A706-","C707-","A708-","C710-","G712-","A715-","C722T","G770A","A869G","A887G","C902T","G1424A","A1492C","G1673A","C1775A","T1986C","A2026G","A2038G","T2080G","C2083T","C2098A","A2131G","G2155A","T3059A","C3322T","C3499T","A3601C","A3608G","G3766A","A3787G","A3805G","A4076C","A4084G","G4150A","G4237A","G4354A","A4407G","C4471T","G4475C","A4498T","C4525A","A4642G","C4643A","A4652C","T4665C","C4674T","T4678G","T4679G","A4683G","A4684G","C4691T","C4820T","C4902T","A4951G","A5049C","G5087A","A5159G","T5197G","G5225A","T5354C","A5385C","A5421G","A5432G","T5487C","C5548G","C5563G","C5567A","C5569A","C5612A","T5620G","T5627C","T5686C","G5781A","T5828A","A5842G","C5958A","G6037A","A6044C","C6052T","A6195G","-6211C","-6212C","-6213T","-6214G","-6217A","C6278A","A6279T","T6289C","C6322T","A6324G","C6340T","A6376C","G6478A","T6545C","C6745T","G6767A","A6776G","C6777A","A6788G","A6790C","C6824T","A6937G","-6948A","-6949C","-6950A","C7016A","A7152C","C7171T","T7411A","A7492G","C7690G","G7717A","G7753A","T7852C","C7898A","A7912T","G7937A","C7938G","G7947A","A7977G","A7988C","G7989A","A7992G","T8020C","A8032T","A8036T","A8104G","C8106T","G8107A","A8118G","G8130A","G8170A","A8227C","T8232C","A8248T","G8255A","C8265T","T8266A","G8269A","C8294-","G8304-","G8373-","A8409G","C8411T","C8413A","T8414A","T8440C","A8494C","C8543T","G8882A","A8909G","T8913C","T8915G","C8916A","A8917G","T8918A","C8928A","C8934A","T8935A","G8936A","A8947T","A8952C","C8967A","-8971A","T8974G","G9007A","A9009-","T9014-","T9019A","G9026A","G9040T","A9041C","G9042A","T9075C"],"INT":["I101L","M154I","K211R","V234L","E256D"],"RT-p51":["A173T","S322T"],"RT-p66":["A173T","S322T","I505V"],"gp120":["T35K","Q142M","N157S","V305I","T308E","N311Y","H324Y","L388I","N433T"],"gp41":["D129E","A212S","G215E","E225G","R229Q","D230G","I245F","A268I","V310A","V318I","A321V"],"nef":["T23A","P24E","V33A","H192R","V194I","L198K","Y202F","K204Q"],"p17":["D14E","S54A","Q59K","A83V","C87F","Q90R","K95S","I104L","K112Q","K113Q","A115Q","T122K","N124-","S125-","S126-","Q127-"],"p6":["D32E"],"p7":["Q9P"],"rev":["L18I","P28Y","S30K","E47A","W58R","S61G","T62S","Y63F","E68A","S86D","E87K","A108T"],"tat":["K19R","D61G","Q63E","T64N","H65N","T74I","P77A","D80N"],"vif":["N19R","K22N","Y27H","H30Y","I31R","K33G","N122S","T155P"],"vpr":["T19A","G41S","S94R"],"vpu":["Q5E","E66D","-74D"]},"labels":{"aa":"INT: I101L, M154I, K211R, V234L, E256D; RT-p51: A173T, S322T; RT-p66: A173T, S322T, I505V; gp120: T35K, Q142M, N157S, V305I, T308E, N311Y, H324Y, L388I, N433T; gp41: D129E, A212S, G215E, E225G, R229Q, D230G, I245F, A268I, V310A, V318I, A321V; nef: T23A, P24E, V33A, H192R, V194I, L198K, Y202F, K204Q; p17: D14E, S54A, Q59K, A83V, C87F, Q90R, K95S, I104L, K112Q, K113Q, A115Q, T122K, N124-, S125-, S126-, Q127-; p6: D32E; p7: Q9P; rev: L18I, P28Y, S30K, E47A, W58R, S61G, T62S, Y63F, E68A, S86D, E87K, A108T; tat: K19R, D61G, Q63E, T64N, H65N, T74I, P77A, D80N; vif: N19R, K22N, Y27H, H30Y, I31R, K33G, N122S, T155P; vpr: T19A, G41S, S94R; vpu: Q5E, E66D, -74D","clade":"CRF66_BF1"}},"children":[{"name":"CRF66_BF1_NODE_0000001","node_attrs":{"div":0.10909,"clade_membership":{"value":"CRF66_BF1"}},"branch_attrs":{"mutations":{"nuc":["A1242G","C1243T","C2063A","C2613T","G4870A","T4988A","C5213A","A5233G","T5237C","A5447C","A5621T","G5626T","T5654C","A5718G","G6086A","-6172C","-6201C","C6202A","-6204G","C6222A","A6786G","C6822T","T6826A","T6888C","-6947A","-6952A","-6955A","-6957T","-6959A","-6960A","-6961T","-6995G","-6997A","-6998T","-6999C","-7000T","-7001A","-7002A","A7025C","T7489C","C7931A","G8050A","G8245A","C8412G","A8414G","T8851A","G8905C"],"gp120":["-113N","-114S","-115T","-117S","-119L","-121E","-123Q","N161S","S162N","E315K","M345T","D365N","-368L","-371T","-372E","-373S"],"gp41":["D113N"],"nef":["E176P","R188T"],"p2":["T10-"],"p24":["I6L","T171V"],"pro":["L89M"],"rev":["A68T"],"tat":["N24T"],"vif":["S95N"],"vpr":["P37I","Y45H"],"vpu":["E5V"]},"labels":{"aa":"gp120: -113N, -114S, -115T, -117S, -119L, -121E, -123Q, N161S, S162N, 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D6E, V72I, S119T, I268S; RT-p51: T173R, A200T, T369A, R390K, W410*; RT-p66: T173R, A200T, T369A, L377V, R390K, W410*, S468T, Q480E, D488E, S491P, K512Q, L517V; gp120: A2D, T3A, E4T, L6E, V56I, N64H, T104S, N105S, -106V, -107N, -109G, -110T, -111T, -112P, -116P, -118T, -120Y, M142L, R150K, I156L, N159D, N160S, N162Q, D202N, K204T, K212R, I249Y, A253T, T255N, E262Q, C268R, H280Q, A291T, D294E, R307G, E308P, Y311R, N312E, -319K, K320E, K322-, N327-, K332Q, -367I, -370S, -374N, -384D, R404K, N414K, T433I, N434D; gp41: M4V, G13A, K77Q, Q80R, Q119E, E129Q, N160S, S192A, N239S, A243S, H258R, E272R, R276Q, S293I, S302N, T306A, R334T; nef: A15T, R19K, M20L, A23D, E24G, I43L, A50S, A53P, E63D, V85I, L87F, H89F, Q107R, R178K, K182V, F191R, I194L; p1: H9R; p17: E12K, R15N, R22G, I34L, Y79F, T81A, R90K, K91H, I92V, Q112K, Q113S, K114Q; p2: T8N, N9T, A11-, -12T; p24: V27I, E180D, V191I; p6: P5T, Q30K, L35Q, A39V; p7: K20R, R41K; pro: D60E, L63T, I64L, I72T, I93L; rev: S8N, K30E, E32Q, I52V, I55L, G61I, G90E, Q95E, T108A, E111D; tat: R7K, Y26H, F32Y, S68P, Q76R, R78P; vif: H27Y, K36T, F39L, R41K, K63I, T74P, R92K, R93G, N101T, I128R, I154V, Q178R; vpr: S41G, A55T, I60L, I63T, A89G; vpu: L7S, A15V, L27I, E58D, A63T, D74H, 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-12S; p24: V11I, A14T, D187E, G208A, T210S; p6: P5T, S24L, D32N, L35Q; p7: S4G, K7Q, P9Q, I12M, E21A, K26R, R29K, R52N, A54N; pro: H69Y; rev: K14R, I18T, R39K, G61E, F63Y, N86K; tat: T23N, N65H; vif: I31V, R37K, A62E, N101T, S122N, I128R, R132S, T151V, I154R, Q178R, T188S; vpr: Y15F, E25D, E58V, A59V, I60L, I63S, R94S; vpu: L4V, V5T, I18L, D44E, R47G, D74H, D78V, V79I"}}}]}]},{"name":"CRF66_BF1_NODE_0000003","node_attrs":{"div":0.10402,"clade_membership":{"value":"CRF66_BF1"}},"branch_attrs":{"mutations":{"nuc":["T153C","T159C","G167A","G354A","T534G","G1016A","T1403C","A1607G","A1700G","A1712G","G1720T","A1733G","C1960T","G2027A","A2241G","C2296T","A2713G","C2885T","A2925G","A3097T","A3107T","A3130C","G3211A","C3275T","G3529A","C3610A","T4405C","C4883T","C5019T","T5062G","C5168T","T5170A","T5439G","A5556G","T5584C","T5731A","A5742G","T5826C","C5827G","A6020G","C6087A","A6176G","A6177-","G6179A","C6198A","C6469T","A6508G","A6544G","G6547A","G6572C","C6670T","-6697A","-6698C","-6699A","-6700G","-6702T","A6785T","A6820G","G6936A","C7006A","G7026A","T7751C","G7862A","G8285-","C8286-","T8287-","A8288-","T8289-","T8290-","C8291-","T8292-","C8293-","A8295-","C8296-","A8297-","T8298-","A8299-","C8300-","C8301-","T8302-","A8303-","A8305-","T8371-","A8503C","A8584T","T8829A","C8868A","G8871C","A8874G","T8887A","G8991A"],"RT-p51":["K49R","K277R","T338S"],"RT-p66":["K49R","K277R","T338S"],"gp120":["T78E","E240Q","R391K"],"gp41":["E137Q","V187I","R276H","A328-","I329-","L330-","H331-","I332-","P333-","R334-"],"nef":["Y81F","V85F","C163S","Q170L","D177H","R178G","F191L"],"p17":["V7I","S67A","L75F"],"p6":["S14I"],"p7":["S4G"],"pro":["L63P","V77I"],"rev":["K14R"],"tat":["S70P"],"vif":["E134D","T151A","I159R"],"vpu":["L42I"]},"labels":{"aa":"RT-p51: K49R, K277R, T338S; RT-p66: K49R, K277R, T338S; gp120: T78E, E240Q, R391K; gp41: E137Q, V187I, R276H, A328-, I329-, L330-, H331-, I332-, P333-, R334-; nef: Y81F, V85F, C163S, Q170L, D177H, R178G, F191L; p17: V7I, S67A, L75F; p6: S14I; p7: S4G; pro: L63P, V77I; rev: K14R; tat: S70P; vif: E134D, T151A, I159R; vpu: L42I"}},"children":[{"name":"OK011547","node_attrs":{"div":0.13426,"accession":"OK011547","clade_membership":{"value":"CRF66_BF1"},"country":{"value":"ES"},"date":{"value":2011.0},"Strain_name":{"value":"PV623909"},"LANL_subtype":{"value":"CRF66_BF1"}},"branch_attrs":{"mutations":{"nuc":["T201C","G224A","A304C","A305T","G369A","G379A","A380T","A388G","T396C","A399G","G401C","G424A","A435C","A499T","C558T","G579A","T595G","T596G","A604G","A606G","A609G","G614T","G677A","A689G","G818A","C871G","A903G","T992G","G1019A","T1046A","G1290A","A1418G","A1450G","-1455T","A1464C","A1474G","G1495A","A1499G","A1500G","T1501C","G1503A","A1525G","A1565G","G1588A","C1613T","C1656A","G1731A","T1741C","T1754G","G1848A","C1903T","G2008A","G2023A","A2075C","G2134A","T2269C","A2311G","A2380G","A2389G","C2452T","G2470A","C2485T","C2488A","G2665A","G2683A","T2740C","G2951A","C3095A","G3098A","G3099A","G3100T","T3121C","T3165C","A3192G","G3224A","T3225C","T3292C","G3307C","G3442A","C3475T","G3520A","A3553G","A3619C","T3634C","T3644G","C3712T","A3760G","G3805A","G3859A","A3890T","A3982G","T4039C","C4076A","T4085C","G4294A","C4428T","C4475A","T4670C","G4678A","A4694G","T4701C","G4708A","C4728A","T4826G","G4835T","C4841T","T4842G","A4888C","C4890A","T4969G","A5046C","T5047A","G5143A","G5159A","T5214C","T5260C","T5293C","T5339C","A5355C","C5356T","C5358-","C5359-","A5360-","C5361-","A5362-","G5363-","A5364T","G5370A","A5411G","G5432A","G5433A","A5461C","A5462G","G5463A","C5495A","G5558A","C5614T","G5650T","T5677A","G5737A","G5747T","G5755A","C5763T","A5796C","T5799-","G5802-","-5812G","-5813T","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","G5853A","T5857G","A5865C","A5869T","T5870C","C5884T","G6028A","A6031C","T6046A","C6116T","G6130A","-6170G","-6171C","-6172G","-6173A","-6174A","-6175C","-6177C","T6178A","-6180C","C6181G","A6182C","C6183A","T6184G","A6186G","C6190T","A6192G","T6193C","G6195A","A6197C","C6199A","-6201A","G6203A","-6204G","-6205C","-6207C","C6211G","C6212A","T6213A","C6221G","G6263T","G6277T","T6279A","G6280A","A6282C","C6287A","A6288G","C6289A","A6326G","T6328G","A6330G","T6331C","G6391A","G6425A","A6489G","G6550A","C6586T","G6638T","A6639C","A6640C","-6701T","A6706G","C6717T","T6719C","A6733G","A6742G","G6774A","G6776C","A6781G","A6789G","A6799C","-6809A","A6810G","A6818G","G6821T","T6829C","-6833A","-6834A","A6839G","A6840C","T6876C","T6904C","G6940A","-6947G","-6952A","-6953A","-6954A","-6955A","-6956A","-6957T","-6958T","-6959A","-6960A","-6961T","-6980G","-6981G","-6982C","-6983A","-6984C","-6985A","-6986A","-6987A","-6988T","-6989A","-6990A","T7039G","G7076A","C7078T","A7100G","C7101T","T7105C","A7113G","A7155G","C7170T","T7228C","G7238A","A7306T","G7307C","G7309A","A7315G","C7344A","A7411C","T7432C","A7456G","G7492A","A7504G","A7590G","C7625T","G7627T","G7631A","C7633G","G7690T","G7712C","A7714G","C7792T","T7796A","C7801A","T7876G","A7891G","C7921T","G7938T","C7960A","A8029C","G8030A","C8031G","G8118A","T8164C","T8182C","C8189T","G8204A","A8216G","C8221T","C8223T","T8267G","G8276A","G8279T","C8331T","G8335T","C8336T","T8337C","-8371A","-8373A","A8403C","G8404A","G8407A","C8412G","A8441G","T8477C","G8487T","A8537C","T8594C","A8597T","C8652A","A8656G","G8666A","A8701T","T8864G","A8868G","C8869A","C8904T","G8905A","G8917A","A8922C","G8955A","-9009G","G9011C","C9012G","-9014T","G9015C","G9016C","C9017A","C9018G","G9025T","G9052T"],"INT":["S39C","L101I","T218I","L234I"],"RT-p51":["A286T","Q334N","G335N","M357T","K366R","V377T","E404D"],"RT-p66":["A286T","Q334N","G335N","M357T","K366R","L377T","E404D","L517V"],"gp120":["N1K","E4A","K5N","E59D","N64Q","-106L","-107K","N108E","-123A","V137L","Q141H","M142K","K143T","H145R","N158E","N159G","A191T","K212R","E262S","H280-","I281-","-282Q","-283L","A288V","F289L","R307E","E308Q","N312G","E315N","-319R","K322G","-328N","K329A","L341P","G361E","-367K","-368I","-370G","-371T","-372N","-373N","-374E","I395M","A408T","T416V","N420S","N434S","T439I","E462K"],"gp41":["V2L","A14E","N96S","Q108Y","D110K","E129N","S165T","N166K","I210L","S212I","L242F","A243S","V301I","N305D","T307I","L322V","A325I","G326C","A343V","L344F","L345S"],"nef":["I10K","V11I","R21Q","R22Q","A49S","D54A","E65D","Q104K","K105R","Y120F","D174E","R188Y","R192K","I194L","D205N"],"p1":["H9N"],"p17":["E12K","R15N","K18R","R22G","R30K","I34L","E55V","V82I","F87W","K91E","I92V","E93D","Q115P"],"p2":["N9-","T10S","A11T","-12S","M14L"],"p24":["A47G","T58A","H87Q","M96I","D187N"],"p6":["G18R","I21T"],"p7":["K3R","R10K","I12A","V13I","K20R","R41K"],"pro":["G17E","I93L"],"rev":["A15T","Y28P","K30N","A54E","G61Q","S106P","S112P","T114I"],"tat":["K12R","R19K","K29R","T40K","G61D","I74T","A77S","P84Q"],"vif":["R31K","F39L","R41K","H48N","H80Q","Q83H","S86A","N101T","L102I","I128R","I154Q","S186N"],"vpr":["A19T","T84L","P85W","Q86-","R87-","A89T"],"vpu":["P3S","L7A","A15S","A16V","S24T","D44N","R47I","A50T","D66E"]},"labels":{"aa":"INT: S39C, L101I, T218I, L234I; RT-p51: A286T, Q334N, G335N, M357T, K366R, V377T, E404D; RT-p66: A286T, Q334N, G335N, M357T, K366R, L377T, E404D, L517V; gp120: N1K, E4A, K5N, E59D, N64Q, -106L, -107K, N108E, -123A, V137L, Q141H, M142K, K143T, H145R, N158E, N159G, A191T, K212R, E262S, H280-, I281-, -282Q, -283L, A288V, F289L, R307E, E308Q, N312G, E315N, -319R, K322G, -328N, K329A, L341P, G361E, -367K, -368I, -370G, -371T, -372N, -373N, -374E, I395M, A408T, T416V, N420S, N434S, T439I, E462K; gp41: V2L, A14E, N96S, Q108Y, D110K, E129N, S165T, N166K, I210L, S212I, L242F, A243S, V301I, N305D, T307I, L322V, A325I, G326C, A343V, L344F, L345S; nef: I10K, V11I, R21Q, R22Q, A49S, D54A, E65D, Q104K, K105R, Y120F, D174E, R188Y, R192K, I194L, D205N; p1: H9N; p17: E12K, R15N, K18R, R22G, R30K, I34L, E55V, V82I, F87W, K91E, I92V, E93D, Q115P; p2: N9-, T10S, A11T, -12S, M14L; p24: A47G, T58A, H87Q, M96I, D187N; p6: G18R, I21T; p7: K3R, R10K, I12A, V13I, K20R, R41K; pro: G17E, I93L; rev: A15T, Y28P, K30N, A54E, G61Q, S106P, S112P, T114I; tat: K12R, R19K, K29R, T40K, G61D, I74T, A77S, P84Q; vif: R31K, F39L, R41K, H48N, H80Q, Q83H, S86A, N101T, L102I, I128R, I154Q, S186N; vpr: A19T, T84L, P85W, Q86-, R87-, A89T; vpu: P3S, L7A, A15S, A16V, S24T, D44N, R47I, A50T, 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A66D"}}},{"name":"KJ849771","node_attrs":{"div":0.18531999999999998,"accession":"KJ849771","clade_membership":{"value":"CRF71_BF1"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_PE071"},"LANL_subtype":{"value":"CRF71_BF1"}},"branch_attrs":{"mutations":{"nuc":["G10A","T13C","-22T","-23T","-24T","-25G","-26A","-27G","-28C","-29C","-30T","-31G","-32G","-33G","-34A","-35G","-36C","-37T","-38C","-39T","-41T","-45C","-46A","-47A","-49T","-50A","C54A","A57C","A62G","G66A","-68G","-69C","-70C","-71T","-72C","-73A","-74A","-75T","-76A","-77A","-78A","-79G","-80C","-81T","-82T","-83G","-84C","-85C","-86T","-87T","-88G","-89A","-90G","-91T","-92G","-93C","-94T","-95T","-96C","-97A","G119T","A161T","T200C","C258T","A265G","-305A","A353G","A378C","T396C","T422C","A424G","T479A","A499G","A554G","G579A","G607A","A674T","-712A","C713T","T718C","A730T","C749G","G770A","A774C","G810A","C830T","T852A","C893T","C950T","A959G","A977G","T978G","T1001C","A1010G","C1013T","G1022A","A1073G","C1137T","C1244T","A1278G","G1298A","G1302A","G1313A","T1335C","C1350G","C1351G","C1447A","A1448T","A1449-","-1455G","-1457A","-1458A","-1459C","-1460T","A1461G","T1478C","G1498A","T1514C","C1523T","G1588A","A1592G","A1595G","A1607G","C1610A","T1646C","A1670G","A1694G","G1697A","A1700C","A1701C","T1741C","A1773G","A1781G","C1782A","T1783A","A1819G","G1852A","A1867T","A1980G","G2026A","A2063T","T2116A","A2188C","A2206C","C2211A","A2212T","A2215G","A2241G","C2263T","A2275C","A2344G","C2383T","G2428A","A2459G","G2498A","T2499C","G2509A","G2539A","T2542C","A2557G","T2607A","G2612A","C2626T","C2635A","C2694T","A2699G","G2707A","A2710G","G2714C","T2737C","C2749T","A2761G","T2779G","G2833A","T2935C","C2968T","C2975A","T2983C","T3013C","G3019A","T3049C","T3059A","A3080C","G3100A","G3173A","A3196G","G3221T","C3224T","G3250A","A3268G","A3277G","A3279G","A3316G","C3352T","C3444G","C3445T","A3447G","A3450G","A3451G","T3492C","T3497C","T3505C","C3533A","A3571G","A3583G","C3589T","A3619C","T3668C","A3676G","C3691T","G3694A","G3695A","T3746C","A3772C","A3796G","A3802G","A3805T","C3856T","G3869A","A3890C","G3891A","C3892A","G3925A","G3989A","A4045G","G4057A","C4140T","C4210T","G4267A","T4288C","T4291G","C4525T","G4622A","A4664G","G4677A","T4717A","A4773G","C4774T","T4776A","G4829A","A4845G","A4850G","G4864A","G4865A","G4871T","C4907T","T4912A","A4951G","T4967A","T4976A","C4978A","T4988A","A5061G","T5062G","C5091T","A5134G","A5155G","G5165A","A5166G","G5167T","A5187G","G5212A","T5228C","G5233A","C5237T","G5257A","T5293C","G5385A","A5432G","T5470A","T5472G","T5487C","A5496G","G5548C","C5567A","G5599A","T5616C","T5626A","T5636C","C5651T","A5656C","G5673T","C5688A","A5718G","A5805C","C5833A","C5851T","T5857G","C5862A","G5866A","G5867A","C5869T","G5902A","C5922T","C5958A","G5963A","C5964T","A6025T","A6030G","C6052T","A6059G","T6101A","A6112G","A6131G","T6134C","A6158C","G6167A","-6170G","-6171T","-6172A","A6174G","-6175C","A6177T","-6180C","C6183A","A6185G","A6186G","C6192G","G6195A","G6198A","G6203A","A6204G","G6205C","A6207C","A6208C","-6210G","-6213G","A6215C","T6216C","-6221G","G6225A","T6252G","A6261C","A6263T","A6277G","G6284C","C6293G","G6311A","T6315A","A6316G","C6317G","A6330G","A6333G","A6335-","A6336-","T6337-","A6338-","G6339-","C6340-","G6349A","T6351G","C6361T","G6371A","C6375A","G6379A","T6395A","C6397T","T6457C","A6461G","A6465C","A6475T","A6508G","G6533A","A6544G","C6545T","G6569A","G6572C","A6576G","G6581A","T6582A","A6583G","A6584C","A6589G","T6592C","A6594C","G6605A","T6618A","A6623C","G6634A","A6635G","T6641A","A6648T","G6669A","C6670T","C6717T","G6723A","G6724T","G6725A","A6733T","T6760C","C6766T","C6777A","A6779G","A6781G","T6787G","A6797T","A6798C","C6800A","A6814G","-6830G","-6831A","-6832A","-6835T","T6838G","A6839-","A6840-","A6841-","A6848G","T6849C","T6856G","T6860C","C6862T","G6884A","G6894C","T6895C","G6906C","T6928C","T6952C","-6956T","-6957C","-6959A","-6960A","T6961C","-6962A","-6963G","-6964T","-6965T","-6966C","-6967A","-6968A","-6969A","-6970T","-6971A","-6972T","-6973C","-6980G","-6981G","-6982C","-6990T","-6999C","-7000C","G7004-","A7007-","C7008-","A7036G","A7037T","G7055A","A7089G","A7090T","A7095C","C7124A","T7147A","T7150-","A7151-","A7152-","C7159A","A7161C","A7190G","A7252G","A7299G","T7330G","G7390A","T7432C","T7433C","C7489T","G7492A","A7589T","A7604T","T7606C","T7678A","A7687T","C7690A","C7699T","C7701G","C7702T","A7743T","A7747G","T7748C","C7755A","G7773A","A7782G","A7847G","T7852C","G7868A","A7873G","G7885A","T7888C","C7950A","A7955G","G7956A","A7971G","A7986G","A7992G","G8006A","G8050T","C8063A","T8097C","T8103C","C8149G","A8170G","G8204A","G8276T","A8284G","T8321G","T8322C","G8323A","G8329A","T8337A","A8363G","G8385C","C8386G","T8387G","A8405G","T8440C","A8456C","A8457C","-8486A","-8487G","-8488C","-8489A","-8490G","-8491C","C8503A","T8504C","T8505A","G8506T","T8507C","T8509C","A8525G","G8531C","G8537A","C8546T","C8552T","A8555G","A8580G","C8581A","T8582C","G8588A","-8595A","A8617G",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E10D, V32I, S39Q, M50I, V72I, T122I, G283S; RT-p51: T39N, K49R, K122E, V135T, F171Y, A173T, T200I, I202V, E207Q, P294T, S322T, I329L, A360T, A376S, K395R; RT-p66: T39N, K49R, K122E, V135T, F171Y, A173T, T200I, I202V, E207Q, P294T, S322T, I329L, A360T, A376S, K395R, T450S, K451R, K452R, V466A, S468P, Q480K, A534T; gp120: N1K, T3K, T23I, T35K, A37I, K57N, E59G, K69E, L83I, K93E, N102H, D105N, -106V, -107S, N108I, N111P, S115T, -116S, -117R, -118P, -119V, -120E, M121E, K123M, G124-, E125-, M126-, I133S, S136A, M137L, E144Q, L147V, V153I, T154E, P155E, -159S, I166R, V173I, T174K, S181T, K203E, K204T, V227I, E239K, E240Q, E241G, V243K, I244L, E247A, D251N, V255N, I257L, N261D, S263T, E265V, S272N, A288V, W290Y, A291T, R307G, T308K, K309E, N311K, K315S, Q316K, -326E, I332A, N334K, S336P, V344I, S347T, G351A, -368S, -370S, -379I, D384I, I395F, G401R, K412S, Q414P, L424M, N433-, N435K, N446D, K482R; gp41: M24I, T96S, T101S, D125E, D129G, T133S, Q147L, A151E, S157N, N160S, I182V, V189T, P216H, R218E, E223G, E228G, D230G, G235R, L254I, L265S, V267A, V301I, V325F, F340A, L345Q; nef: A15R, V33A, E38D, R39Q, -50A, -51N, A54D, C55I, V56A, E63D, T80D, V85I, K92R, K94E, W102H, I133V, V153I, K155E, N157Q, E158K, G159-, N162S, C163S, Q170L, V182M, R188N, L198M, D205N; p17: K30R, E55G, V82I, K113N, S126N, V128A, Y132F; p2: T9-, -11A, I13V; p24: L6M, I15L, V27I, S41T, L83V, N183G, V191I, P207G; p6: I21T, S23P, P24S, -32E, -35K, N47S; p7: R11K, R41K, D48E; pro: N61S, M89L; rev: E11D, L18I, Q36R, R53Q, T68S, P72H, Q101E, T108A; tat: K19R, F32M, A58P, T64N, P81T, G83S; vif: V31I, F44Y, T63V, L64I, I87V, R93K, R95S, I109Q, N122S, H127Q, S130R, P131H, D134E, I159G, H183R, N190S; vpr: E21S, N28S, H45Y, G94S; vpu: L7I, V10A, A15V, I17L, T24S, E60D, L61A, A62E, M67L, -69D, -71M, -72G, -73P, -74L, -75I, -76I, -77G, -78D, -79I, -80N, 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-80N"}}},{"name":"KJ849759","node_attrs":{"div":0.17903000000000002,"accession":"KJ849759","clade_membership":{"value":"CRF71_BF1"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_PE008"},"LANL_subtype":{"value":"CRF71_BF1"}},"branch_attrs":{"mutations":{"nuc":["T3G","C4A","G10A","C40-","G43T","-45A","-46C","-47A","-49A","-50A","T100C","T155G","A167G","G215A","A303G","G369A","G379A","A386G","A430G","A455G","A491G","T534G","A566C","G607T","A673G","G677A","C731T","T748A","G755A","G771C","A803T","T852A","T858C","C879T","A880C","A881T","C950A","G989A","C1013T","A1089G","C1094T","G1109A","A1115C","C1133T","A1157G","T1166C","A1176G","G1192A","T1253A","G1268A","G1277A","A1289G","T1325C","A1329G","A1339G","G1394A","A1400G","G1421A","-1444T","-1445A","-1446A","C1447A","A1448T","-1457A","-1458A","-1459C","-1460T","G1498A","T1502A","G1503A","T1514C","A1525G","C1535T","A1536C","T1547C","A1562G","A1589G","C1598T","A1642G","T1646G","A1657G","A1670C","A1709G","G1736A","A1774G","C1826T","C1833A","G1841A","A1879G","A1907G","G1918A","A1951G","T1978G","A1984G","T2035C","A2059G","T2080A","G2155A","G2173A","A2215C","A2293G","G2411A","C2420T","G2447A","T2464A","C2527T","A2693G","G2725A","T2735C","T2806C","A2830G","C2839A","C2885T","G2925A","A2984G","G3004A","C3038A","A3080C","T3132G","T3133C","A3192G","A3200G","T3225A","G3264A","A3435G","A3478G","G3544A","T3545C","T3567C","A3586G","A3637G","G3651A","A3670G","A3682G","G3686A","C3688A","G3694A","C3712T","T3754C","G3755A","T3820C","C3823T","A3880G","G3907A","A3988G","T3991C","A4033G","G4177A","A4268G","C4428T","C4462A","G4516A","A4552G","C4569T","C4667T","T4670C","T4712C","T4730C","A4740G","A4745T","A4782G","G4799C","C4841A","C4857A","A4858G","G4865A","C4890A","T4891C","T4916C","T4952A","A4956T","T4969G","T4988A","T5028C","G5030A","A5037G","A5039G","T5047C","A5049C","A5088C","T5147C","T5228C","A5236G","G5255A","A5282T","A5284G","A5285G","G5289A","G5328A","A5336G","A5355C","G5370A","A5397G","T5407C","G5408A","T5424C","T5448A","C5451T","C5457T","G5468C","T5471A","G5482A","T5483G","T5487C","A5491C","A5493G","A5545G","A5556G","G5557A","A5558G","A5560G","T5576C","A5594G","G5599A","A5612C","C5620T","T5641C","G5644A","C5654G","T5686A","A5709G","G5781T","A5787T","T5788G","T5789C","G5790A","C5792A","A5793G","C5795A","C5797T","T5799G","G5801C","G5802A","A5804C","A5806G","T5807C","G5808A","G5809A","G5810T","G5811T","-5812G","-5813G","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","T5829G","G5837A","T5841C","A5846T","A5856G","T5860C","G5866A","G5867A","C5917T","A5957G","A6009G","A6022G","G6029A","A6065G","G6070A","G6088T","C6115T","C6116T","A6173G","A6174G","-6175G","T6178C","A6186G","C6192A","A6200G","G6201A","C6202A","G6205A","-6210T","A6215-","T6216-","G6217-","A6222G","A6251G","A6254C","C6255A","A6259C","A6267G","T6276A","C6293T","T6295G","G6314A","T6315C","A6332G","A6333C","A6336G","T6337C","G6349A","T6385C","T6409C","A6455G","A6456G","T6457A","G6463A","G6466A","T6472A","C6482A","C6483A","A6490C","A6553G","C6595A","T6602A","G6604A","T6610C","T6618A","C6619T","C6632T","T6637A","G6638A","G6647A","A6664G","A6684G","G6697-","-6703A","C6712T","G6714A","T6722G","G6723C","G6724A","G6725A","A6728G","C6729G","C6766T","A6767C","A6779G","A6802G","T6815C","A6822C","-6835T","C6850T","C6862T","A6868G","G6869A","G6871A","A6877G","A6936C","-6956A","-6957A","-6960C","-6963C","-6965G","-6967A","-6968A","-6969G","-6970G","-6971A","-6972G","-6973T","A6978G","-6980A","-6981G","-6982G","A6989-","C6991-","A6992-","C6993-","T6994-","G6995-","T7003-","-7006C","C7008T","C7020G","G7058A","G7061A","G7062A","A7063G","T7075C","A7088C","G7145A","A7149G","A7151G","C7153G","A7154G","A7155G","C7156G","A7160G","G7162A","C7174T","C7201T","A7239G","G7276A","A7309G","A7322C","A7398T","G7423A","T7433C","A7456G","C7463A","A7507G","A7522G","A7533G","A7589G","T7606C","T7626A","A7629G","T7630G","T7642A","G7660A","G7668A","A7669G","C7699T","A7706C","A7729G","A7747T","G7777A","A7791G","A7798C","C7801T","A7840T","A7847G","A7873G","G7885A","A7915G","G7918A","C7939T","A7955G","A7971G","A7974G","A7986G","G7997A","G8001C","C8005T","C8010A","T8013C","C8047T","T8060A","G8070T","C8078A","T8100C","A8105G","A8163G","C8167T","T8218C","T8257C","A8262G","A8275C","C8293T","A8308G","A8338G","A8360C","A8370G","G8402A","G8453A","A8458G","A8484-","C8485-","-8490G","-8491C","C8495T","C8503A","T8567C","T8568C","A8571C","G8588A","-8595T","A8597T","T8600C","A8647G","-8648G","A8654G","C8720T","T8740C","A8746G","T8747G","G8774A","G8795A","A8805G","G8814A","G8817A","G8818A","A8819G","A8827G","T8829A","G8834A","T8864G","C8868G","G8888A","G8894A","A8909G","C8911G","C8921T","C8934T","G8955A","C8967T","G9016A","A9099-","G9100-","A9101-","C9102-","G9105A","C9141G","C9143A","A9144G","C9155A","A9158T"],"INT":["S17N","I165V","T218I","D229E","A265V"],"RT-p51":["E40D","V106I","V118I","D123E","T200A","F214L","D248E","R277K","T297A","H315N","I329L","F346C","K366R","T369A","L377Q","R390K"],"RT-p66":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S17N, I165V, T218I, D229E, A265V; RT-p51: E40D, V106I, V118I, D123E, T200A, F214L, D248E, R277K, T297A, H315N, I329L, F346C, K366R, T369A, L377Q, R390K; RT-p66: E40D, V106I, V118I, D123E, T200A, F214L, D248E, R277K, T297A, H315N, I329L, F346C, K366R, T369A, L377Q, R390K, N447S, L491S, S519N, V531I, A554T; gp120: N1S, T35A, N52S, E59K, N71D, M72I, E78D, -107G, N111S, T112N, -116E, -117G, -118K, -119M, M121-, K123R, I133V, T134H, S136D, K138R, D139N, V141E, P155Q, D157K, N158E, -159D, -160N, -161N, N201G, N206K, P210K, K212N, S250T, V255N, N261K, E262K, E265K, K277R, M281I, R287K, A291T, T292G, E294I, I305L, K309E, K319I, E323A, -328N, G339R, Q361P, -370T, -371T, -372E, -373S, -374T, -375R, -376R, -377S, -378N, T385I, P389R, V402I, G403K, K412Q, G431S, N432S, N433E, N434G, T436E, K462R; gp41: M7L, Q32L, L54M, K77R, T96A, L108Q, D109G, D113E, R122K, I135L, E148D, D163G, I182V, V194I, R218G, E223G, E224G, E228G, D232N, P236Q, L237S, C253S, S256I, R259S, I266T, T268A, N287S, E320G, R324S; nef: I10V, M20I, T48-, A49-, -50A, -51N, A54D, V85F, I133T, Y135W, K155E, E158K, G159K, N162S, C163S, Q170L, D174E, P176A, R188S, A190G, D205N; p1: K4R, I5M, H9S; p17: E12K, R15K, K32R, S67A, K91M, K113R; p2: A7V; p24: L6H, A14P, S41T, Q50S, S120G, E128D, S149G, R154K, T200A, K203R; p6: P25S, -32S, Q52K; p7: R11K, V13I, K20R; pro: T12K, V15I, N37D, D60E, I62M; rev: K14R, T15A, F21L, P31S, Q36R, R50K, R53W, P67S, T68A, V71E, P77Q, D86S, P107S; tat: W11Q, C31S, F32Y, V36S, I39L, R57G, D61S, S62G, V67A, P77L; vif: S52G, I66V, Q91R, L102T, N122K, I124L, I128R, D134E, T151A, I154T, T155P, K168Q; vpr: Y15H, G51R, I60L, I61V, R62K, G75R, I84L, A89T; vpu: Q2P, Q5Y, V13I, A16G, T24S, L27I, E58D, M67A, G68I, -69G, -75V, -77E, -79I, 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pro: K14R, E21D, E65D; rev: S30R, N62D, R66G, T68A, T82S, N86H, N99D, V104L; tat: K12N, K19R, T23N, K29R, F32L, I39M, P59S, S70P, P77A; vif: F39S, H48N, V51T, K63T, I87V, R95S, I109L, I128V, A151S, I154V, R159T, T167K, T180I; vpu: Q2N, Q5V, A15T, 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R20K, V72I, I101L, I201V; RT-p51: K11R, T35I, E40D, R49K, S68G, I135V, A173I, D291E, T296S, D324E, Q428H; RT-p66: K11R, T35I, E40D, R49K, S68G, I135V, A173I, D291E, T296S, D324E, Q428H, A534T, V559I; gp120: D64E, E78D, I80V, K93Q, T104R, D105N, -106A, -107S, N108I, T115S, -116N, G117Q, N119P, E122G, M137I, K142R, N150K, I153L, -160T, T161-, S162-, D202E, K203T, K204A, T208S, T210V, K212N, E240K, V243I, A247K, N252S, K254Q, S263T, E265K, S278G, P285L, D294E, E308G, K309Q, R322G, N334D, Q335K, S336N, P341L, I343V, T344A, G351R, -368H, -382G, -383N, -384G, G401R, R416S, R428S, G430R, N432G, N433G, N435E, A443T; gp41: L4F, G13S, A14T, I24V, L54M, K106T, N109D, Q110N, D113G, E119Q, I135L, T189V, I193V, N195H, R214G, I222T, E223A, E225G, D230G, P236T, L237S, R259H, V267A, T281I, C285W, N287S, I318V, R327G; nef: M20I, V30A, R35Q, H40R, A54D, L58V, V85L, Y102H, K105Q, H116N, L137I, P150T, K152R, Q170L; p17: E55I, Q65H, V82I, T84V, D93E, K113N; p24: A14T, I15L, L83V, V86M, H87Q, M96I, K170R, P207Q; p6: P5T, Q30P, K31R, K32Q, G34E; p7: S4G, I12N, V13I, K20R, R52G; pro: H69Q; rev: E11D, F21L, P31S, E32G, A54D, V109I; tat: A58S, V67A, P77L, S87P; vif: R37G, K63N, R93K, N122S, D134E, K155P, P156Q; vpr: T28A, S41N, H45Y, I60L, Q77R, T84N, R86Q, A89T, A93T; vpu: L4I, I6V, A15V, I18L, V21A, I25V, E48D, -71V"}}}]},{"name":"CRF71_BF1_NODE_0000009","node_attrs":{"div":0.14039,"clade_membership":{"value":"CRF71_BF1"}},"branch_attrs":{"mutations":{"nuc":["G697C","-1452A","-1455A","G1588A","C2420T","A3010G","T4976C","A4993C","A5059G","A5558G","G5725A","C5917T","-6172T","A6174C","A6186C","C6190T","-6210A","A6333-","C6336-","C6396A","G6466A","T6599C","T6602A","G6638C","T6763C","C6935A","-6996A","A7256G","G7517C","T7642G","A7962G","G8006A"],"RT-p51":["L377Q"],"RT-p66":["L377Q"],"gp120":["-118S","D139-","S181N","F249L","S250T","E262Q","Q361K","-368N","-369G","-371T","-374D","-376K","I468V"],"gp41":["V72L","D113E","E220G","G235R"],"p17":["G121A"],"p7":["R41K"],"rev":["T15A","R53Q","V104L"],"tat":["D61G","K85E"],"vif":["Q136P","K158R"],"vpu":["D40N","L82-"]},"labels":{"aa":"RT-p51: L377Q; RT-p66: L377Q; gp120: -118S, D139-, S181N, F249L, S250T, E262Q, Q361K, -368N, -369G, -371T, -374D, -376K, I468V; gp41: V72L, D113E, E220G, G235R; p17: G121A; p7: R41K; rev: T15A, R53Q, V104L; tat: D61G, K85E; vif: Q136P, K158R; vpu: D40N, L82-"}},"children":[{"name":"KJ849761","node_attrs":{"div":0.17895999999999998,"accession":"KJ849761","clade_membership":{"value":"CRF71_BF1"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_PE016"},"LANL_subtype":{"value":"CRF71_BF1"}},"branch_attrs":{"mutations":{"nuc":["-41A","G43A","G121T","A133T","G215A","G224A","T288C","A304T","G317A","C456T","C462A","C467T","G495T","A499C","T506C","C525T","A533C","G607A","T614G","A653G","C688A","C700G","A701C","G702A","G703C","A705G","-706G","C707A","-712G","-713C","G740A","A747C","G762A","A791G","G810A","T852A","A860G","C902T","C926A","C950T","T978G","G989A","C1005G","G1067A","A1145G","T1182C","A1205G","A1208G","A1242T","C1243G","G1256A","G1388A","G1404A","-1444C","-1445C","-1446C","C1447A","A1449G","-1450T","-1451A","C1453A","A1454C","-1457A","-1458A","-1459C","-1460A","T1502G","T1511C","C1541T","C1724T","A1743G","C1775G","A1839G","G1845A","T1888C","C1985G","T1986C","A1993T","G2038A","A2113G","A2230G","A2380C","G2407A","T2464G","C2503T","A2512C","C2584T","C2596A","T2608C","A2616G","A2693G","G2707A","C2715A","A2716C","C2749T","A2764G","A2837G","C2839G","C2845A","A2914G","A2925G","G2947A","A2969G","T3067C","T3080A","A3096T","G3221T","T3225A","G3250A","T3292A","T3342A","C3355T","A3382G","A3409G","C3445T","A3451G","A3478G","C3492T","G3523A","G3544T","T3550C","A3637G","C3649T","G3664A","A3787G","T3793C","G3814A","C3823T","C3825A","G3907A","T3970C","G3989A","A4036G","A4076C","C4110T","A4148G","G4183T","G4186A","G4252A","A4255G","G4267A","A4391T","G4659A","C4674T","C4691A","G4696A","A4697T","C4702T","T4703A","A4767G","A4838T","A4950C","G4995A","C5006G","A5015G","G5024A","C5034T","A5045G","C5086A","G5179A","A5236G","C5237T","A5248G","G5257A","T5314C","A5375G","T5430C","G5433A","T5442C","T5471A","G5482C","T5483A","T5487C","G5538A","C5551T","G5561A","C5567A","C5614T","T5616C","T5617A","A5622G","G5647A","T5677A","T5679C","C5688T","G5700A","G5836A","G5837T","A5840T","-5842G","-5843G","-5844G","A5858G","C5859T","G5861A","T5871C","G5882A","C5958A","A6025T","A6030G","T6046G","A6076G","G6088T","T6109C","A6132G","C6165G","A6177G","A6179G","-6180T","C6183A","C6186T","A6194G","G6195T","G6198C","C6202T","A6204G","A6208C","-6211T","T6216A","A6219G","A6248G","A6261G","G6269-","A6270-","G6274A","-6281C","-6282A","-6283A","T6294C","C6317A","T6325A","A6326G","T6328G","A6329G","-6333C","-6336A","A6370T","G6403T","T6457A","A6466C","C6483A","A6484C","A6489G","C6496T","G6525A","A6535G","C6559T","A6574C","G6588A","G6605A","G6617A","T6618A","G6631A","T6658C","G6714A","A6715G","T6745C","A6765C","T6772G","G6774A","A6780C","A6786G","T6787G","C6790A","A6791G","A6797G","T6810G","-6830A","-6831C","-6832A","-6835T","A6836-","A6837-","T6838-","A6842G","A6855C","T6856A","T6860G","A6887T","A6893C","G6894A","G6910A","A6932T","A6935G","A6936G","A6947G","T6952G","-6956A","-6957A","-6958T","-6959G","-6960A","-6961T","-6962G","-6963G","-6964T","-6965A","-6966C","-6967T","-6968T","-6969G","-6970G","-6971A","-6972A","-6973T","-6974G","-6975A","-6977A","-6978C","-6980A","-6981A","-6982A","-6983T","-6984T","-6985A","A6989G","-6990A","-6997G","T7003-","-7008A","-7009C","C7018T","C7045T","T7047G","G7056A","C7087A","A7088C","T7150C","G7152A","T7153C","T7156C","A7158C","G7162C","G7181A","A7238C","A7269G","A7275G","G7307A","T7313C","A7322G","T7330C","A7402G","A7459G","G7508A","A7522G","A7531G","A7532C","C7590A","A7604G","G7614A","A7620G","C7631T","G7642A","A7656G","G7657A","G7689A","A7706C","C7723T","A7747T","G7790A","A7791G","A7799C","T7844C","G7883A","G7885A","C7903A","C7940A","G7942C","G7965A","A7977G","A8011G","T8016C","G8018A","C8051A","G8107A","T8112C","G8173A","G8204A","T8277C","T8278C","G8402A","G8427A","G8429A","A8455G","A8482G","A8484-","C8485-","-8490G","-8491C","A8493G","A8494G","C8503A","A8519G","G8531T","A8573G","-8595C","A8597G","C8684T","G8732T","A8792C","G8795C","C8825T","A8827T","T8887A","A8909G","G8945A","G8954A","C8967T","C8971T","C9012T","A9023C"],"INT":["T17N","V72I","I101L","T112I","T125A","K136N","T206S"],"RT-p51":["D123E","K174R","T200A","A207D","N248E","D250E","K277R","I292V","L329I","Q334L","A376S","D399E","F416Y"],"RT-p66":["D123E","K174R","T200A","A207D","N248E","D250E","K277R","I292V","L329I","Q334L","A376S","D399E","F416Y","A466V","K483N"],"gp120":["N1S","T2V","A3T","N5D","L6S","V10I","T35K","E59G","D64K","E78D","K93R","T104S","D105-","S109A","T112V","-116K","M121E","E122G","N132D","Q155K","D157E","N158E","-160G","S162K","E183D","N201K","K204N","T210N","K212R","R224K","E240D","R245K","D251N","V255N","R287K","D294E","N304T","S306R","R307K","E308K","K309T","N311R","N312K","T313A","K315E","I319R","-326T","T330A","N334T","S336A","M345L","S347H","T360S","K361G","S365G","-370T","-372W","-373N","-375T","-377L","-378N","-379D","-380T","-381E","-382N","T385-","M398R","G401E","K412Q","N435T","T436N","A443T","K462Q","K472R","K474R"],"gp41":["V2I","M7V","V69I","K77Q","T96N","T101A","S104N","K106R","Q110Y","I135L","E148D","D163S","N166H","V194I","P213T","G221E","E225G","V238A","D239N","I270T","V301I"],"nef":["M20I","G29T","N47S","T48-","N49-","-50A","-51G","A54D","E63D","V85L","E151D","N162I","V182E","V194M"],"p17":["A54S","E55A","D93E","A118D","A122G","G123T","S124G","-126S"],"p2":["N8Q","T9V","-10N","-11T"],"p24":["I6L","V11I","V27I","S41T","L83V","P92A","T171C","G225S"],"p6":["T22A"],"p7":["S4G","I12M"],"pro":["K14R","G16E","L63A","E65D"],"rev":["S8N","V16I","L18I","P31H","E32Q","I55V","G57E","T68K","E87K","V109I"],"tat":["F32Y","V36H","P59S","S62N","T64N","R78P","E86K"],"vif":["V25I","H30Y","R37N","F39L","K61E","N122H","A137T","N140K","T167K"],"vpr":["H45Y"],"vpu":["P3S","L4I","V14I","S24T","-71I"]},"labels":{"aa":"INT: T17N, V72I, I101L, T112I, T125A, K136N, T206S; RT-p51: D123E, K174R, T200A, A207D, N248E, D250E, K277R, I292V, L329I, Q334L, A376S, D399E, F416Y; RT-p66: D123E, K174R, T200A, A207D, N248E, D250E, K277R, I292V, L329I, Q334L, A376S, D399E, F416Y, A466V, K483N; gp120: N1S, T2V, A3T, N5D, L6S, V10I, T35K, E59G, D64K, E78D, K93R, T104S, D105-, S109A, T112V, -116K, M121E, E122G, N132D, Q155K, D157E, N158E, -160G, S162K, E183D, N201K, K204N, T210N, K212R, R224K, E240D, R245K, D251N, V255N, R287K, D294E, N304T, S306R, R307K, E308K, K309T, N311R, N312K, T313A, K315E, I319R, -326T, T330A, N334T, S336A, M345L, S347H, T360S, K361G, S365G, -370T, -372W, -373N, -375T, -377L, -378N, -379D, -380T, -381E, -382N, T385-, M398R, G401E, K412Q, N435T, T436N, A443T, K462Q, K472R, K474R; gp41: V2I, M7V, V69I, K77Q, T96N, T101A, S104N, K106R, Q110Y, I135L, E148D, D163S, N166H, V194I, P213T, G221E, E225G, V238A, D239N, I270T, V301I; nef: M20I, G29T, N47S, T48-, N49-, -50A, -51G, A54D, E63D, V85L, E151D, N162I, V182E, V194M; p17: A54S, E55A, D93E, A118D, A122G, G123T, S124G, -126S; p2: N8Q, T9V, -10N, -11T; p24: I6L, V11I, V27I, S41T, L83V, P92A, T171C, G225S; p6: T22A; p7: S4G, I12M; pro: K14R, G16E, L63A, E65D; rev: S8N, V16I, L18I, P31H, E32Q, I55V, G57E, T68K, E87K, V109I; tat: F32Y, V36H, P59S, S62N, T64N, R78P, E86K; vif: V25I, H30Y, R37N, F39L, K61E, N122H, A137T, N140K, T167K; vpr: H45Y; vpu: P3S, L4I, V14I, S24T, 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P59S, S62G, V67A, P68T, L69I, S87Q; vif: R37K, R41S, V51I, K61T, G101S, R132S, T167K; vpr: L85P; vpu: Q5Y, V13I, A16G, K32R, G68E, P69-, L70-, I72-, G73-, N74-, 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L28I, L45Q, V165I; RT-p51: V35I, S251N, T357S, K395R, E404D; RT-p66: V35I, S251N, T357S, K395R, E404D; gp120: E74D, N109T, M398L, N435T, T437S; gp41: Q32L, L81I, L82M, D129N, V130E, Q137L, V318I, R324S, I329V; nef: A15T, A26V, E38G, A83G, V85F, H89F, R188H, H192Q; p17: S126N; p24: I6A, V11I, A14P, A47C, E128D, E180D, A194S; p7: K7R, K20R; pro: I13V; rev: P31S, S106P, A108T; tat: P77L; vif: N19S, T20K, R50K; vpu: 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N27S, V72I; RT-p51: K32N, I135R; RT-p66: K32N, I135R; gp120: K5T, D34N, L57V, -104S, -105D, -106V, -107A, N108S, T109I, T110N, T112N, -118K, -119G, -121I, N150K, V154M, E157G, S158L, D159G, S167N, I180T, N201K, N267T, K277R, S278G, K287R, F289L, D294E, R315G, R322K, -326P, N369-, T371-, -383S, K391R, N432D, N433D, E436-, K462R, R480K; gp41: V24M, V28G, D109N, S133G, A136T, N140S, K144R, A156T, N160S, K172R, A189T, Q199K, A212V, R233T, G240S, T243A, C253F, H259Q, I270T, N298K, I319L, L330I, A343T; nef: T15N, K39R, A50T, L55M, S88G, V148I, F191Y, Y203F; p1: H9N; p17: Q59K, N124S; p2: A7V, N9T; p24: I11M, V230I; p6: -26Q, Q28V, Q30G, K31Q, E32G, -33Q; p7: I12S, K34R; pro: K14I, D35E, I64V; rev: I21T, Q51H, S54T, R58Q, I59L, T68S, L78I, V104L, *117E; tat: S68P, S70P, L77F; vif: G101D, A155G, Q167K, K179G; vpr: E6G, L68M; vpu: L7F, I17V, V21I, V39I, K41N, I43L, D44A, R47I, 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V27I, P207Q; p6: P23-, S24P, -26L, A39T, *50L; p7: R11K, K41R; pro: K14R, N61D; rev: D11E, F21A, S30N, P67S, Q74L, D86E, C89S, S112P; tat: K12Q, V36K, I39T, P58A, Q63K, V67S, L69I, S70P, T74S; vif: M29K, K33R, G37E, V39E, K63R, R92K, Q105R, A137T; vpr: S28R, I37V, H40Q, Y45F, A55T; vpu: V15A, I18L, L27F, L34V, R37K, -66A, M67V, -69V, -70E"}}},{"name":"JF804812","node_attrs":{"div":0.19301000000000001,"accession":"JF804812","clade_membership":{"value":"CRF28_BF1"},"country":{"value":"BR"},"date":{"value":2005.0},"Strain_name":{"value":"0679SV"},"LANL_subtype":{"value":"CRF28_BF1"}},"branch_attrs":{"mutations":{"nuc":["T201A","G215A","C227A","G265A","A302T","A303-","G329T","A368T","A374G","A399C","A424G","A435G","A437T","C456T","C462A","C467T","G508A","T534A","C535G","A562G","A563G","C590T","G607A","A619G","T635C","T641G","G644A","G677A","A697G","G717A","T718C","C747A","G818A","G869A","T978G","G989A","A998G","T1028G","T1040C","T1046G","C1178T","A1193G","A1359T","C1362T","A1404G","T1427C","A1442T","C1444T","A1449G","A1450C","G1452A","G1455A","C1456A","G1472A","T1501A","A1526G","C1613T","A1642G","C1658G","G1673A","C1680A","A1701T","A1733G","A1735G","-1746C","-1747C","-1748T","C1749T","T1752C","T1754-","C1755-","C1756-","T1783G","T1785G","C1787T","T1790C","C1825A","C1826A","G1829A","C1831A","A1835G","A1839G","G1845A","A1849T","A1857G","A1897T","A1907G","A1932G","T1955C","A1958G","C1985A","T1986C","C2005T","C2010T","T2013C","A2014C","G2023A","T2024G","A2038G","T2043C","T2066A","A2075C","A2154G","G2156A","T2199A","A2210G","A2216C","G2224A","T2245C","A2317G","A2332G","G2358T","G2359T","C2420T","A2461G","T2499C","A2519G","G2548A","C2589T","A2645G","A2665G","A2692G","A2693G","G2702A","A2707G","T2724G","G2727A","A2738T","C2739A","A2743C","T2778A","C2845T","G2872A","G2878A","C2909T","G2914A","A2920G","A2951G","G2957T","G2972A","A3010G","C3075T","G3088A","G3094A","C3100A","A3103G","A3116G","C3174T","T3181A","A3264G","A3292C","T3303C","G3340A","C3449A","A3451G","A3521C","T3544G","A3562G","T3567C","C3613T","T3628C","C3649A","G3664A","G3667A","A3682C","G3685A","A3733G","A3787C","T3793G","G3805T","G3825A","C3843T","G3891A","T3967C","G3989A","T4039C","A4076C","A4130C","C4140T","C4146A","A4148G","G4150A","G4183A","T4234C","G4243A","G4252A","A4255G","G4303C","A4306G","G4351A","T4412C","A4474T","A4498G","C4501T","A4546T","G4582A","T4656C","C4667T","A4671G","G4673A","A4693C","A4717T","C4728A","A4737G","G4779A","T4786A","G4829A","C4833A","A4834G","G4835T","A4857G","A4877G","A4878G","C4883T","A4892G","A4901T","A4968G","G4986A","G5009A","C5050A","A5051G","T5084C","G5087A","G5131A","A5154C","G5167A","A5200G","C5221T","T5228C","T5237C","C5268T","A5282T","T5292C","A5336C","G5359C","G5370A","A5375G","C5444A","C5495A","A5545G","C5567A","A5612T","T5614C","C5620G","A5621T","A5628T","G5668A","C5679T","G5685A","T5686G","G5700A","G5737A","A5743T","G5747T","A5796G","-5805C","A5840T","G5861A","G5864C","A5866G","C5884A","G5893A","C5958A","G5972A","A6008G","G6016A","A6030G","G6037A","A6053G","A6065G","G6086A","T6109G","G6121A","T6170G","T6175C","A6180G","T6181C","T6187A","A6194G","G6198C","G6201A","-6203A","-6204G","-6205G","-6207T","-6211A","-6212A","-6213T","-6214A","-6216T","-6217T","G6218T","-6219G","T6264A","G6266A","G6269A","C6278A","G6314A","T6315A","C6318A","T6321C","T6325A","C6345T","T6351C","A6354G","T6372G","G6379T","C6387A","A6420T","G6458A","A6465C","C6477A","C6496T","T6511C","G6525A","G6577C","C6601T","G6604A","A6622T","A6628G","C6666T","C6667A","A6668G","C6670T","A6679C","A6682G","A6695C","C6707T","C6708G","G6716A","T6721G","T6745C","A6746C","T6747C","A6781T","C6790A","A6798G","A6801G","C6810T","G6819A","A6820T","G6821A","T6828A","T6829C","T6835C","T6838C","A6840G","G6848T","C6849T","A6858G","A6932T","C6938T","A6959T","A6963C","C6964T","C6966A","T6967G","T6968A","G6969T","G6970C","-6971T","-6973C","-6974A","-6977G","-6978A","A6987C","T6991G","-6995G","-6996A","-6997G","-7002A","-7005G","-7006T","A7037T","A7095T","T7114C","G7126A","C7127T","T7130A","C7153T","A7154G","A7158G","T7159C","G7160C","G7162T","A7163C","A7183G","A7373T","G7390A","A7428G","A7504G","T7516C","G7517A","A7620G","A7633T","T7642C","A7666G","A7669G","C7702T","A7711G","A7747C","T7762A","A7763T","A7764C","G7765A","T7775C","G7790A","C7874T","G7885A","T7894C","C7939T","A7941C","C7954A","A7995G","A8011C","C8051A","C8065T","C8146A","C8149G","G8170A","G8181T","C8213T","G8219T","C8220G","C8221T","C8223T","A8228G","G8264A","T8268C","A8276G","T8277C","G8280T","T8290C","A8297G","A8303G","G8304T","A8306C","T8348A","C8364T","A8367G","A8370C","G8436C","T8440C","G8453A","A8458G","A8468G","T8483C","G8528A","G8540T","C8546T","G8554A","A8555G","A8564G","A8588G","T8595G","C8646T","A8653C","G8654A","C8727A","G8802A","A8823G","T8835C","A8844C","G8846A","A8847G","G8848C","A8912G","T8915C","A8971C","A9009G"],"INT":["D6E","E10D","S17N","A23V","S39N","V72I","I101L","S119P","T122I","T124N","T125A","E256D"],"RT-p51":["K20R","V21I","V35E","T39A","M41L","W88F","I135T","I142V","T165I","M184V","T200A","E203K","L210W","R211K","T215Y","L228H","P272S","T286A","A288S","V293I","A327V","I341V","A360V","K390R","E399D","I403T"],"RT-p66":["K20R","V21I","V35E","T39A","M41L","W88F","I135T","I142V","T165I","M184V","T200A","E203K","L210W","R211K","T215Y","L228H","P272S","T286A","A288S","V293I","A327V","I341V","A360V","K390R","E399D","I40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D6E, E10D, S17N, A23V, S39N, V72I, I101L, S119P, T122I, T124N, T125A, E256D; RT-p51: K20R, V21I, V35E, T39A, M41L, W88F, I135T, I142V, T165I, M184V, T200A, E203K, L210W, R211K, T215Y, L228H, P272S, T286A, A288S, V293I, A327V, I341V, A360V, K390R, E399D, I403T; RT-p66: K20R, V21I, V35E, T39A, M41L, W88F, I135T, I142V, T165I, M184V, T200A, E203K, L210W, R211K, T215Y, L228H, P272S, T286A, A288S, V293I, A327V, I341V, A360V, K390R, E399D, I403T, L452K, K476Q, H483Q, L491S, E529D; gp120: A3T, E4Q, T35K, V40I, N52D, E59G, M67V, N71D, E78K, D85E, N105D, L106V, R109G, T112S, I137K, G138R, D139N, Q142N, V154K, P155Q, I156T, N157E, T164I, I166T, N167S, I173S, Q175H, P178Q, Y189F, D202N, K204T, T208K, R224K, E241D, P271L, N272D, I281L, P285W, A288T, I298P, T308A, K309N, N312K, K315R, Q316R, G322N, E323K, F325Y, K329R, A332F, Q335R, T360S, -370D, -372K, -373T, -374E, -375N, -376G, D384-, I395F, S412R, Q414L, L426I, N433-, N434-, T437S; gp41: V24L, N42S, V72I, K106R, S107T, D109K, E110D, E148D, D153E, K154S, D163N, L191F, Q213P, D217E, K231R, S293I, L304F, A306C, T307I, I309V, V321I, V322A, I325A, C326F, I332V, R334V; nef: R8C, S9G, M10L, D28E, G29R, A32P, K39R, R71K, L85V, H102Y, Q104P, E151D, E154K, N161D, M168L, S169A; p1: K4R, H9Q; p17: K30R, I34V, R58K, K76R, K95R, D102E, D121G, V128T; p2: A7V, N9-, S10-, V13N; p24: L83V, T210S, S225G; p6: L1I, T8S, E19G, T21I, -26Q, Q28D, Q30G, K31R, D32E, E33G, G34L, L35Y, Y36P, P49Q, S51*; p7: S4G, I12N; pro: L10I, V11I, I13V, K14R, G16E, K20R, L33F, N37D, K45R, F53L, I54V, L63T, A71V, I72T, L76V, V82A, L90M, I93L; rev: L18I, P31S, Q36K, I55L, A68E, L73F, P100T, Q101E, A108T, E111D; tat: T40K, R57G, T64N, P77L, T82K; vif: M29V, K36T, Y44F, I51V, V65I, I67K, Q83S, K91E, I98V, Q105H, I128V, D134N, T155K, G182D, N190H; vpr: E17A, Y45H, A55V, I60L, I63T, R85P, A89T; vpu: Q2L, S3P, Q5V, L7F, V21I, L27V, D44N, I46L, R47I, D60E, Q61L, E62S, E63A, L65V, -66D, -68G, M71-, G72-, 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F72Y, R77Q; vpu: Q2H, K38R, D44E, M67-, -69V, 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K154R; p6: D32E; p7: K3R, S4G, R11K, K26R, K41R; pro: I15V, K20R, N61D; rev: L13I, V16I, L18I, I55L, T68E, L73F, L78I, D86N, G88D, I102V, E111G; tat: K12Q, T23N, F32L, I39M, T40K, P59H, S62N, T64N, H65N, P77S, D80N; vif: G37K, I51V, R92E, I98V, A137T, V154T, T155K, I159T, S186N; vpr: I60L, L68M, T84N; vpu: S3A, Q5I, L7A, L27F, I42L, D60E, Q61L, E63A, L65G, -66D, -68G, M71-, G72-, H73-, D74-, A75-, P76-, W77-, D78-, V79-, N80-, 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L87I, F143Y, E151D, A156E, E158K, C163S, Y202F, Y203F; p17: K26N, G62S, K91R, V94I, K113T, S126R; p2: A11-; p24: I6L, V27I; p6: T8S, F15L, I21R, L35K, K42R; p7: K26R, D48E; pro: I15V, N61D; rev: D11E, L13I, A68T, L78I, D86S, V109I; tat: K19R, T23N, P58T, P59H, H65D, P77F; vif: I51V, A62D, K63E, R93K, Y110N, N122K, V129I, T151A, K158R, T159I, Q178R; vpr: P37I, Y45H, Q77R, I84N, R85P; vpu: L7I, L27F, K38R, D44N, Q61H, E63A, L65V, 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T125A, A205S; RT-p51: K390R; RT-p66: K390R; gp120: G124-, K127-, T134-, D159N, P285-, D294-, N312K, A332I, Q335N, V344E, R416S, T437N; gp41: A6V, D163S, S256L; nef: R19K; p2: N9G, T12V, V13-; p24: R154K; rev: Q74P; vif: K91Q, E117D, N122K, E134N, T155A, R167Q, T170V, K181R; vpr: S28N, E48N, A55E, Q77H"}},"children":[{"name":"JF804807","node_attrs":{"div":0.19555999999999998,"accession":"JF804807","clade_membership":{"value":"CRF29_BF1"},"country":{"value":"BR"},"date":{"value":2005.0},"Strain_name":{"value":"0264RI"},"LANL_subtype":{"value":"CRF29_BF1"}},"branch_attrs":{"mutations":{"nuc":["-305A","A374G","A380G","A423C","C503T","G508A","T539A","G599A","A605G","G615A","C641A","T668C","A675C","G678A","A706G","T718C","C747A","G806A","G818A","T861G","C875T","C892T","T897C","T978A","T979C","A1007G","T1046A","A1050G","C1051T","A1115C","G1126A","A1208G","C1244A","A1259G","T1262C","T1325C","T1409C","A1449G","A1452G","A1485-","A1486-","G1487-","G1488A","G1489A","C1490A","A1492C","A1500G","A1586G","A1592G","A1595G","C1680A","G1697A","A1715G","A1759G","C1761A","T1785A","C1787T","T1790C","C1833T","G1845A","C1853T","A1920G","T1975C","C1981T","A1982G","C1987T","T2013C","A2014G","A2038G","T2041G","G2068A","A2128G","C2281A","G2294A","C2301A","A2304G","C2326T","A2404C","G2417A","A2459G","A2464C","T2597C","C2626A","A2645G","G2702A","C2720T","C2749T","A2750G","A2751G","T2788C","A2808C","G2887A","C2909T","A2932G","A2937G","G2947A","C2978T","C3013T","A3028G","C3038T","G3088A","G3127A","T3165C","C3223T","A3238T","C3266T","A3274G","A3276T","A3316G","G3340A","A3454G","A3583G","T3602A","A3611C","C3649T","A3766G","G3796A","G3802A","A3835G","G3935A","A3973C","A4066C","A4107G","T4224C","A4249G","G4252A","C4258A","G4262A","G4263A","A4338G","A4403G","C4404T","A4695G","T4701G","C4728A","C4757T","G4770A","C4771A","A4956T","A4970G","G4971A","C4977A","A5036G","A5049G","A5057G","G5075T","T5083C","G5131A","T5147C","A5155G","G5199A","T5203C","T5263C","A5269G","C5281A","C5306T","G5344A","G5365C","G5396A","A5397C","A5418G","C5445A","A5460G","C5495A","C5549G","C5559T","A5574G","T5584C","A5594G","G5599T","C5602T","T5616C","G5717A","A5742G","G5747C","C5778T","A5781G","T5788C","T5789A","T5791-","G5794-","C5795-","A5796-","C5797-","T5798-","T5801A","-5804A","-5805A","-5806T","-5807T","-5808A","-5809T","-5810T","-5811G","-5812G","-5813C","-5814A","-5815G","-5816T","-5817T","-5818A","-5819T","-5820G","A5846C","T5852A","G5858A","A5926G","A5935C","A5947G","G6002A","C6010T","A6092G","A6130C","C6163T","G6172A","A6180G","A6188G","-6204G","-6205T","-6208T","-6209C","-6210T","-6211T","-6212G","-6213A","-6214A","A6215T","-6216A","-6217T","G6218A","-6219T","-6221A","C6241T","G6269A","G6314A","A6316G","A6329-","A6330-","T6331-","A6332-","A6333-","T6334-","A6346G","T6393C","A6456G","C6483T","A6484G","A6489G","A6532G","T6541C","A6544G","G6605A","T6637C","C6667T","A6668G","A6674-","A6675-","T6676-","A6682G","T6688G","A6695C","C6707A","C6708G","C6717T","T6738A","A6751G","C6752T","A6754C","T6763C","C6767G","G6774C","C6777A","G6785A","A6787G","C6790A","A6797G","G6818A","A6833-","A6834-","T6835-","C6849T","C6857T","A6858C","T6888C","G6889A","T6958-","A6959-","A6960-","A6962-","T6967A","-6968G","-6972A","-6974G","-6976C","-6980G","-6984C","A6990C","C6991T","A6996G","-6997T","T7003-","G7004-","A7033G","A7040G","G7089C","T7141C","T7150C","A7151T","C7153T","G7155C","C7159G","G7162C","C7165T","C7174T","G7182C","A7240G","C7320T","A7322C","A7373G","A7376G","T7411C","G7459A","G7484A","A7487G","G7501A","A7531G","A7532G","A7533C","A7540G","A7549G","T7555G","T7561A","A7589G","T7618C","G7628A","G7688A","A7696T","A7832G","A7880G","C7906T","G7918A","C7921T","C7931T","G7987C","C8005A","A8006G","T8008G","A8017G","G8050A","C8063A","A8069C","G8079A","A8104G","A8152G","T8155C","A8163G","T8176C","C8189A","G8255A","A8276G","T8277C","T8279G","G8280T","C8286T","A8367-","A8370G","T8371G","G8372C","G8373A","G8374A","A8409G","A8425T","A8426T","T8451C","C8480T","T8483C","G8490T","C8504A","C8593G","C8609T","C8646T","A8716G","C8720T","G8784A","G8805A","C8828T","G8834A","T8835C","G8875A","T8883C","C8904A","T8923G","C8934A","T8935A","A8947T","A8950T","A8954G","G8955A","T8966G","A8980C","C9017T","G9117A"],"INT":["V54I","K111R","V150A","G163K","K188R","T210V"],"RT-p51":["D67N","T69N","K70R","K103N","V108I","K122E","E123D","D177E","M184V","E203K","K219G","K238T","P272S","K281R","H315Y","M357T","I393M","Q394L"],"RT-p66":["D67N","T69N","K70R","K103N","V108I","K122E","E123D","D177E","M184V","E203K","K219G","K238T","P272S","K281R","H315Y","M357T","I393M","Q394L","L503I","I506L"],"gp120":["A2T","D50N","I80V","N109I","T112N","S116L","-117E","-118Y","E122-","-123K","-124E","-127T","D139N","V154M","N159-","N160-","V180T","N201S","P210L","K212R","D251N","N272D","N274-","S278R","I281L","-282G","-283R","G286-","A288V","-294G","Q300Y","L305V","G307A","T308E","K315E","G322R","N327-","N335S","M345T","-368T","N369-","T371-","-382G","-383N","I396V","S412T","N433Y","N434T","N435K","E436D","G443A"],"gp41":["I4T","M7L","T25A","G61S","I62V","K77A","I84M","T96A","D109N","G129N","K172R","I177V","I193V","L210F","E228D","I235V","L254I","R259H","N287S","L296I","V318I","I325A","G326V","A328V"],"nef":["S9-"],"p17":["K30Q","R58K","L61I","V94I","K114Q","A115T","N124S","V128A"],"p2":["T10A"],"p24":["S44A","T54I","L83T","T1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V54I, K111R, V150A, G163K, K188R, T210V; RT-p51: D67N, T69N, K70R, K103N, V108I, K122E, E123D, D177E, M184V, E203K, K219G, K238T, P272S, K281R, H315Y, M357T, I393M, Q394L; RT-p66: D67N, T69N, K70R, K103N, V108I, K122E, E123D, D177E, M184V, E203K, K219G, K238T, P272S, K281R, H315Y, M357T, I393M, Q394L, L503I, I506L; gp120: A2T, D50N, I80V, N109I, T112N, S116L, -117E, -118Y, E122-, -123K, -124E, -127T, D139N, V154M, N159-, N160-, V180T, N201S, P210L, K212R, D251N, N272D, N274-, S278R, I281L, -282G, -283R, G286-, A288V, -294G, Q300Y, L305V, G307A, T308E, K315E, G322R, N327-, N335S, M345T, -368T, N369-, T371-, -382G, -383N, I396V, S412T, N433Y, N434T, N435K, E436D, G443A; gp41: I4T, M7L, T25A, G61S, I62V, K77A, I84M, T96A, D109N, G129N, K172R, I177V, I193V, L210F, E228D, I235V, L254I, R259H, N287S, L296I, V318I, I325A, G326V, A328V; nef: S9-; p17: K30Q, R58K, L61I, V94I, K114Q, A115T, N124S, V128A; p2: T10A; p24: S44A, T54I, L83T, T107V, E128D, R132K; p6: L1I, -26R, E29K, Q30D, K31E, D32G, E33Q, G34N, Q52*; p7: G8P, Q9R, R11V, I12-; pro: T12I, G16E, K41R, I62V, I72T; rev: D11E, L12V, T15I, K20R, P28L, S31P, E47Q, H53S, S54A, R57G, A68T, P72H, I102V, T114N; tat: R7N, T40K, P58S, S70P; vif: R37G, F39V, H48N, A62N, I124L, V129I, P131T, L163F, V166A, G182D, N190S; vpr: Y15H, R32K, R80K, R87T; vpu: R37K, R47T, -66A, -67V, N80T, 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I201V; RT-p51: I60V, I292V, V317M, Q334L; RT-p66: I60V, I292V, V317M, Q334L, S519N, K527Q; gp120: E19D, V37K, I56V, Q86E, K143R, V242I, M281-, V332I, G351R; gp41: N42S, D113E, V194I, D230N; nef: A49K, A50D, I133T, Q170L, D174E, D177E, R178G; p17: S126N; p24: E128D, V148A, G225S; p6: T23S; p7: R10N, T12I, K41R; pro: L33V, Q69K; rev: R48K; tat: S62G; vif: P47H, I128R, K176D; vpr: Q3R, A4P, Y15H, I70V, R85P; vpu: E36Q, L42I"}},"children":[{"name":"KY628221","node_attrs":{"div":0.21291000000000002,"accession":"KY628221","clade_membership":{"value":"CRF90_BF1"},"country":{"value":"BR"},"date":{"value":2011.0},"Strain_name":{"value":"BRGO6043"},"LANL_subtype":{"value":"CRF90_BF1"}},"branch_attrs":{"mutations":{"nuc":["C201T","A215G","G265A","A388G","G394A","G455A","C516T","T602C","G608T","G612A","A632G","A643G","A730T","C773T","A809G","T852A","G866A","A945G","A959G","T978C","G980A","G1067A","A1093C","C1103T","C1175T","G1192A","C1265T","C1316T","T1334C","G1346A","C1362T","A1418G","T1457C","C1478G","G1486A","G1487C","G1503A","A1525G","G1532A","G1553A","C1656A","A1670G","C1693T","A1756T","C1767G","C1768A","A1793T","G1794A","C1825G","T1986A","C1996T","T2236C","C2296T","T2365C","T2464G","G2470A","A2498G","C2503T","G2539A","A2545C","A2592G","C2596T","C2626G","T2632C","A2743G","T2854G","A2884G","A2972G","T3040A","C3067T","A3080G","A3103G","G3154A","A3292G","C3358T","G3364A","G3398A","A3403G","C3496T","T3721A","T3754C","T3946C","A4012G","A4270T","A4407G","C4543T","C4569T","G4683A","T4702A","A4774G","G4835A","G4878A","G4887A","A4888G","T4952A","A5046G","C5052A","A5056G","A5057G","A5086G","A5090G","G5140A","C5162T","A5213G","T5239C","G5275A","T5293C","A5336T","A5369G","T5424C","G5427A","C5495G","G5501C","T5515A","A5545G","C5563T","A5564C","T5584C","T5616C","C5620A","A5621C","T5626A","G5729A","C5778T","C5795G","A5796G","-5805A","G5866A","A5915G","C5916T","A6019G","A6176C","A6185C","G6198C","C6201-","T6202-","G6206A","-6207G","A6208G","-6214A","-6219T","G6223T","A6229C","A6254G","A6353G","C6361T","T6395A","C6396G","T6403A","C6412A","C6427T","C6446A","A6458G","A6461G","C6469T","A6489C","C6499T","G6572A","A6574G","G6604A","G6611A","A6618G","G6647A","A6648T","A6649C","A6682G","-6700G","-6702T","A6734G","T6735A","G6773A","G6776A","A6779G","A6781C","C6787T","A6818T","A6820T","T6828-","T6829-","A6833-","A6841G","C6919T","C6935A","A6936G","A6956T","A6957T","A6962G","G6963A","A6965G","T6976-","T6979C","-6980G","-6981A","-6982G","A6990G","A6996-","-7002C","C7008A","A7009T","G7048A","A7102G","T7105C","A7151G","C7153T","A7157C","C7159A","G7160A","A7161C","G7168A","G7291A","A7312G","G7426A","A7471G","G7492A","G7552A","C7645A","A7688G","C7701A","G7712C","G7717A","A7750G","G7807A","T7913G","T7921G","C7931T","C7938T","G7947A","T7968C","G7997A","T8032G","C8065T","G8079A","A8092T","T8145C","G8219A","G8254A","T8265C","A8288G","G8303A","T8304G","T8366C","-8369T","-8370A","-8371G","-8372A","-8373T","-8374C","C8382G","C8412G","T8414A","A8415G","A8426G","A8474T","T8501C","G8534T","A8584T","T8595C","C8606T","T8648C","T8711C","C8720T","C8741T","A8746T","C8775T","A8777G","T8825C","G8846A","T8867C","A8893G","C8903T","G8905T","C8921T","G8936A","C8957T","G8991A","A9009G","G9013A","G9137A"],"INT":["K211R","A265V"],"RT-p51":["D123E","I135V","K166R","D177E","I293V","H315Q","I329V","V435I"],"RT-p66":["D123E","I135V","K166R","D177E","I293V","H315Q","I329V","V435I"],"gp120":["T21V","-106W","-107K","N109S","S115N","K123-","E125D","T134A","S167G","L198I","N202D","K203E","K212T","E240K","A253T","N255S","E265I","H280-","-282Q","-283M","E307K","K309D","K322Y","F325Y","N327-","K329R"],"gp41":["N114K","N129G","T133N","E137Q","L204V","F206L","L210F","A212V","G215E","I222T","D232N","R259H","L263F","I281T","A306T","V321A","I329V","V334R"],"nef":["-10R","-11S","P14A","Q22R","T23Q","P24N","E28A","G29A","Y81F","Y135F","M168I","K184R","R188L","M194V"],"p1":["H9N"],"p17":["K18R","R20Q","K91N","E93K","K103R","Y132F"],"p24":["S41T","T72A","N121T","R154K"],"p6":["P5L","Q26L","P30E","L38F","A39T","P49R"],"p7":["R7N","Q9P","V13I","K20R"],"pro":["L63H"],"rev":["K17Q","P28L","R50K","S62A","L73F","T82S"],"tat":["T40R","G42A","Y47N","S57G","Q63S","H65R","S70P","P77S","D80N","S87P"],"vif":["G33R","F39Y","K63R","V98I","D101S","N122K","I154V","P156T","K157R","K167R","G185E"],"vpr":["Q77H"],"vpu":["Q5T","L7I","A16T","R41K","A63G"]},"labels":{"aa":"INT: K211R, A265V; RT-p51: D123E, I135V, K166R, D177E, I293V, H315Q, I329V, V435I; RT-p66: D123E, I135V, K166R, D177E, I293V, H315Q, I329V, V435I; gp120: T21V, -106W, -107K, N109S, S115N, K123-, E125D, T134A, S167G, L198I, N202D, K203E, K212T, E240K, A253T, N255S, E265I, H280-, -282Q, -283M, E307K, K309D, K322Y, F325Y, N327-, K329R; gp41: N114K, N129G, T133N, E137Q, L204V, F206L, L210F, A212V, G215E, I222T, D232N, R259H, L263F, I281T, A306T, V321A, I329V, V334R; nef: -10R, -11S, P14A, Q22R, T23Q, P24N, E28A, G29A, Y81F, Y135F, M168I, K184R, R188L, M194V; p1: H9N; p17: K18R, R20Q, K91N, E93K, K103R, Y132F; p24: S41T, T72A, N121T, R154K; p6: P5L, Q26L, P30E, L38F, A39T, P49R; p7: R7N, Q9P, V13I, K20R; pro: L63H; rev: K17Q, P28L, R50K, S62A, L73F, T82S; tat: T40R, G42A, Y47N, S57G, Q63S, H65R, S70P, P77S, D80N, S87P; vif: G33R, F39Y, K63R, V98I, D101S, N122K, I154V, P156T, K157R, K167R, G185E; vpr: Q77H; vpu: Q5T, L7I, A16T, R41K, A63G"}}},{"name":"KY628218","node_attrs":{"div":0.21198000000000003,"accession":"KY628218","clade_membership":{"value":"CRF90_BF1"},"country":{"value":"BR"},"date":{"value":2007.0},"Strain_name":{"value":"BRGO3145"},"LANL_subtype":{"value":"CRF90_BF1"}},"branch_attrs":{"mutations":{"nuc":["A263G","T307A","A380G","G406T","A410T","A424G","A435G","G519A","T539C","A545G","A585G","C586T","G644A","G656A","A680G","T728C","T749C","G818A","G944T","A1025G","C1040T","C1089A","G1139A","C1229T","A1237T","G1301A","G1313A","T1331C","C1354G","A1479G","T1482G","C1490T","A1492G","A1496C","T1511C","A1543G","C1550T","G1552A","C1721T","A1743G","A1777G","C1787T","C1828T","A2059G","A2215T","A2227G","C2440T","A2459G","A2515G","T2521A","A2627C","C2701A","A2715C","C2720T","A2727G","C2863T","G2887A","T2935C","C2975A","C2978T","T3045C","G3046A","A3192G","G3221A","A3230T","A3265G","G3427A","T3589C","G3631A","A3644G","C3712T","A3733G","A3748G","A3808C","G3866A","C3908A","G3925A","G3950A","G3985A","A3988G","C3995A","G3997A","C4110T","G4183A","A4255C","A4408G","T4441A","A4642G","T4643G","C4645T","A4678T","G4679A","A4696C","C4715T","A4785G","C4786T","A4838G","G4856A","G4870C","C4898T","C4911T","T4916C","T4988G","T5073C","A5225G","A5248C","G5257A","A5284G","T5292C","T5303A","A5336G","A5345G","G5363A","A5400G","A5411G","G5437C","A5447G","T5475C","G5570A","A5601G","A5619G","A5628C","A5640T","A5643G","G5647A","C5651G","C5654T","T5670A","T5686G","G5794A","-5805G","C5834T","G5857A","G5861A","G5939A","A5956C","A6008G","A6059G","T6101C","T6134C","T6151C","G6167A","G6175C","A6177T","G6179A","A6191G","G6195A","T6196C","G6198A","T6199G","-6203G","-6204A","-6205G","-6207A","A6209G","A6229G","A6251G","A6275G","G6277A","T6287C","A6327C","T6328A","A6350G","C6375A","T6424C","G6425A","G6466A","T6511C","G6526A","G6547A","C6548T","A6553G","G6577T","A6584C","C6595T","G6605A","C6673T","-6700T","-6702C","T6719C","G6743A","C6767A","T6769C","C6787G","C6807T","G6809A","A6837C","A6841C","A6865T","A6960G","T6961C","G6963C","-6968G","-6969A","-6970C","-6971A","-6972C","-6973A","-6974A","-6975A","-6980A","-6981G","-6982C","A6985T","A6989G","-6994A","-6995A","-6997T","-6998A","-6999C","-7002A","G7004A","A7102T","G7126A","A7148G","T7150G","A7152G","C7156T","C7159T","C7162A","G7373A","T7433C","T7579C","A7642G","A7668G","A7672G","T7690C","A7765G","A7782G","C7792A","A7818G","T7888G","A7898G","G7918A","G7937A","C7941A","C8005A","C8026A","G8052A","G8055A","G8102A","A8111G","G8173A","C8209T","T8215G","G8245A","A8255G","T8268C","A8273G","C8274T","T8292G","T8302A","A8311C","G8317A","A8367-","G8368-","T8375-","G8376-","G8377-","A8378-","A8447G","G8490A","T8495C","T8498C","G8554A","G8588A","T8595G","G8634C","G8666T","T8708C","G8717A","C8771T","A8780G","T8829A","A8852G","T8855C","A8870C","A8887G","A8893C","G8922A","A8950T","C8967T","A9135G"],"INT":["E11D","V31I","L45I","M50I","A59T","L74I","T112I","K160N","N222K"],"RT-p51":["E40D","K122E","I178L","E207A","K211R","P294T","M317T","K366R","A376T","S379C"],"RT-p66":["E40D","K122E","I178L","E207A","K211R","P294T","M317T","K366R","A376T","S379C","I517V"],"gp120":["A3T","D29N","E34D","N52D","K69E","D105-","N109W","T110N","N111I","N114K","S115T","-116D","-117N","-118K","-119T","-120E","-121E","-122E","I133V","M141V","Y145H","N158T","I166V","T174K","E183D","A191T","E241D","I244L","D251N","-281T","F289L","E294D","D297N","L305I","T308A","N311K","A318V","E319K","N328T","K329S","-372T","-373D","-376N","N378T","N379T","T380-","N432E","N433S"],"gp41":["V24M","K122R","N129S","N160S","D163E","K172R","N195K","K199E","A212T","P213Q","F241L","R250K","S251N","A267T","I270V","I318V","V322A","T324V","L330R"],"nef":["S9-","G12-","P25T","D50N","R71K","L85V","E98Q","E108D","C163S","E176D","Q182R","K184T","Y203F"],"p17":["G24V","K30R","I34V","G62R","T84V"],"p24":["E71D","H120N","Y169F","A208G"],"p6":["T22A","K33R","S50L"],"p7":["N5D","F6V","Q9R","K11R","K26R","R29K"],"rev":["V19I","S30N","H53N","L60I","C85Y","D88G","V109I"],"tat":["K12R","A21P","N24S"],"vif":["N19R","T20I","K31I","E37A","T67V","R95T","D134E"],"vpr":["V37M","S41G","E48D","I63T","L67M"],"vpu":["L7F","V14I","A15G","A16I","F27V","A63T","P76L"]},"labels":{"aa":"INT: E11D, V31I, L45I, M50I, A59T, L74I, T112I, K160N, N222K; RT-p51: E40D, K122E, I178L, E207A, K211R, P294T, M317T, K366R, A376T, S379C; RT-p66: E40D, K122E, I178L, E207A, K211R, P294T, M317T, K366R, A376T, S379C, I517V; gp120: A3T, D29N, E34D, N52D, K69E, D105-, N109W, T110N, N111I, N114K, S115T, -116D, -117N, -118K, -119T, -120E, -121E, -122E, I133V, M141V, Y145H, N158T, I166V, T174K, E183D, A191T, E241D, I244L, D251N, -281T, F289L, E294D, D297N, L305I, T308A, N311K, A318V, E319K, N328T, K329S, -372T, -373D, -376N, N378T, N379T, T380-, N432E, N433S; gp41: V24M, K122R, N129S, N160S, D163E, K172R, N195K, K199E, A212T, P213Q, F241L, R250K, S251N, A267T, I270V, I318V, V322A, T324V, L330R; nef: S9-, G12-, P25T, D50N, R71K, L85V, E98Q, E108D, C163S, E176D, Q182R, K184T, Y203F; p17: G24V, K30R, I34V, G62R, T84V; p24: E71D, H120N, Y169F, A208G; p6: T22A, K33R, S50L; p7: N5D, F6V, Q9R, K11R, K26R, R29K; rev: V19I, S30N, H53N, L60I, C85Y, D88G, V109I; tat: K12R, A21P, N24S; vif: N19R, T20I, K31I, E37A, T67V, R95T, D134E; vpr: V37M, S41G, E48D, I63T, L67M; vpu: L7F, V14I, A15G, A16I, F27V, A63T, P76L"}}}]}]},{"name":"CRF90_BF1_NODE_0000003","node_attrs":{"div":0.17029,"clade_membership":{"value":"CRF90_BF1"}},"branch_attrs":{"mutations":{"nuc":["G3334A","C4771A","G4861A","T5188A","A6932T"],"gp120":["T360S"],"tat":["H65R","S68T"],"vif":["A62D"],"vpr":["S28R"]},"labels":{"aa":"gp120: T360S; tat: H65R, S68T; vif: A62D; vpr: 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-72G"}}},{"name":"MN467100","node_attrs":{"div":0.20706000000000002,"accession":"MN467100","clade_membership":{"value":"B"},"country":{"value":"US"},"date":{"value":2016.0},"Strain_name":{"value":"2664_TEMRA_6"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C179-","A180-","G181-","T182-","G183-","G184-","C185-","G186-","C187-","C188-","C189-","G190-","A191-","A192-","C193-","A194-","G195-","G196-","G197-","A198-","C199-","T200-","T201-","G202-","A203-","A204-","A205-","G206-","C207-","G208-","A209-","A210-","A211-","G212-","T213-","A214-","A215-","G224A","G282A","C300T","A301G","A304T","A353G","G365A","G366A","A368T","T377C","A388G","G394A","G407A","T422C","T426C","T434C","A435T","G452A","G455A","C456T","A461G","C467T","G471A","A499G","G520A","A562G","G579A","C590G","C603A","A605C","G607A","G629A","T636C","C700T","C707T","C713T","G717A","C723A","A724G","C746T","T749G","C773T","A809G","G821A","T852A","C890T","G908A","T917C","C926T","A1002C","T1003A","G1005C","G1016A","A1025T","G1078C","T1172C","C1182T","C1220T","T1238C","A1250G","C1253T","G1268A","G1271T","G1313A","T1331C","A1339G","G1346A","A1349G","C1403T","C1406T","A1475G","T1482G","T1484G","A1488G","G1495A","G1499A","A1500G","C1501T","T1502G","A1528T","G1553A","A1664G","T1676C","A1691G","A1694C","G1718A","T1752C","A1781G","T1864C","C1986T","C1996T","T2011G","A2012G","A2023G","G2027A","G2058A","A2113G","G2117A","C2149T","T2195C","T2245C","A2290G","G2387T","A2400G","G2411A","G2428A","T2443C","T2458C","T2479C","A2498T","A2579G","G2580C","A2592G","A2617G","C2644T","C2671T","G2686A","A2693G","C2714G","G2725A","G2728A","G2847A","T2908C","A2925G","T2935C","C2953T","C3002T","G3004A","A3010G","G3019A","T3040C","A3064G","A3080G","G3093A","C3129A","T3132A","G3364A","G3427A","T3433C","G3473A","G3490A","G3523A","A3592C","A3622G","A3655C","C3665G","G3694A","C3712T","T3721C","A3768G","C3773T","A3794C","C3808A","G3836A","G3841A","C3843T","T3865C","G3878C","G3891A","C3940T","T3991C","A4076C","A4109G","T4117C","C4146A","A4148G","G4177A","C4180T","G4183A","C4195T","A4243G","G4252A","G4351A","A4384G","T4412C","A4474T","G4495A","A4525G","A4561G","A4643C","T4674C","A4677G","A4683G","A4688G","C4690T","A4693G","T4716C","A4721G","G4723A","T4727A","G4735A","A4774G","G4778A","A4811G","A4850G","G4862A","T4868C","A4888G","T4910C","A4949G","T4967A","T4976A","C5019T","C5034T","G5037A","A5048G","A5057G","C5086T","G5087A","G5093A","C5111T","G5123A","A5134G","G5167A","G5213C","G5225A","G5267A","G5273A","G5275A","T5354A","G5363A","A5397G","T5439C","C5444G","T5448A","A5462G","T5492C","C5552A","A5558G","C5563G","A5574G","T5576C","T5578C","C5615A","A5623G","T5624A","T5636C","A5659T","G5668A","G5700A","C5713G","C5727A","A5742G","T5788G","A5790G","A5793G","-5800A","-5805A","T5829C","G5839A","C5867A","A5869T","A5935C","T5974C","A6019G","T6026A","A6044G","C6115T","T6134C","A6142C","A6168G","-6170G","-6171T","-6172C","A6173C","-6175G","A6186G","A6188G","T6196G","T6202G","-6203T","-6204G","-6207A","A6208C","A6209T","-6210T","-6211T","-6212C","-6213C","-6215A","-6216T","-6217G","-6219A","A6222C","A6233C","C6262T","C6278A","G6329A","A6330G","T6400C","G6401A","G6403T","A6478G","T6511C","A6514C","T6523C","T6551C","A6576G","A6583G","A6602T","C6607T","A6648C","T6652C","C6670T","T6688-","A6689-","T6690-","A6691-","C6692-","A6693-","-6697A","-6698C","-6699A","-6700A","-6701A","-6702T","-6703G","G6716A","T6720G","T6721G","A6734G","T6735A","G6743A","A6754G","C6758T","A6765G","C6766G","T6769G","G6771A","A6773G","A6786C","A6789G","A6797G","C6800A","C6807T","A6812G","A6818G","A6820G","C6824A","T6828A","T6835C","T6838A","A6840C","A6842C","C6843A","T6849A","T6856G","T6860C","T6863G","C6864T","G6871A","A6900C","C6922T","C6935A","C6951G","-6956A","-6957T","G6963A","T6964G","C6966A","-6968T","-6969G","-6970G","-6971A","-6972T","-6973T","-6980G","-6982A","-6984C","-6985A","-6997G","A7007-","T7011C","C7014T","C7020A","C7045T","G7054A","A7090T","A7095T","T7099C","G7101A","A7102C","C7107T","C7124G","A7129G","A7133G","C7134T","A7152G","A7155G","C7156T","A7157C","T7159G","A7161G","A7177G","G7190A","G7197A","G7254A","G7256A","G7276A","A7313C","A7348C","A7373G","T7433C","G7440A","T7516G","G7517A","G7519A","A7533G","C7605G","C7625T","T7626A","G7627T","G7631C","T7642A","G7658C","A7668G","T7691A","T7708A","A7714C","G7720A","G7735A","G7754A","G7760A","A7761G","A7763G","A7796T","C7801A","T7813C","A7832G","G7846A","T7852C","T7853G","T7866G","A7873G","C7874T","G7937A","C7938T","C7941A","C7960A","A7992G","A8006G","G8007T","A8009G","G8018A","T8020C","T8035C","A8036T","C8047A","C8048-","T8049-","G8050-","C8051-","G8053T","C8056T","C8057G","T8064C","C8065G"],"INT":["K7Q","A21T","M22I","A23V","L28M","E35Q","S39N","I101L","T112A","T124N","T125A","I203M"],"RT-p51":["V8I","A98S","K102R","V106I","I135L","S162A","K166R","T200A","Q207E","S251N","K277R","I329V","G333E","P345Q","F346Y"],"RT-p66":["V8I","A98S","K102R","V106I","I135L","S162A","K166R","T200A","Q207E","S251N","K277R","I329V","G333E","P345Q","F346Y","D460N","Q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K7Q, A21T, M22I, A23V, L28M, E35Q, S39N, I101L, T112A, T124N, T125A, I203M; RT-p51: V8I, A98S, K102R, V106I, I135L, S162A, K166R, T200A, Q207E, S251N, K277R, I329V, G333E, P345Q, F346Y; RT-p66: V8I, A98S, K102R, V106I, I135L, S162A, K166R, T200A, Q207E, S251N, K277R, I329V, G333E, P345Q, F346Y, D460N, Q520H, Q524E, K558R; gp120: Q5N, L58M, N64D, D105G, -106V, -107Q, N108P, N111A, S114R, -116R, -117W, -118D, -119F, -120P, -121M, K123T, K127Q, Q142K, D159S, E183N, E241G, T250S, E265T, H280-, I281-, -282Q, -283M, A288T, F289W, D297N, H302Y, N304R, S306N, R307G, N311T, N312S, K315E, Q316K, A318V, K320E, R322G, Q324K, F325Y, N327-, I331Q, N334K, S336P, S337V, N349T, Q361K, T366S, -368I, N369E, -370N, -372K, -373T, -374E, -375E, -376S, -377E, -381E, -382T, -383I, D384-, T385-, I386-, T387-, P389Q, R412S, N414I, T416N, S418L, L424V, T427V, N433S, N434S, N435Q, E436G, D446N, R448K, G467E, V468I; gp41: I4A, R46K, V72I, K77R, T101S, L108Y, D109N, E110Q, D113E, E119Q, K122R, L130I, E151K, D153S, K154E, T165S, N166K, I177V, L184V, F188C, L191F, A212I, P213Q, D230G, G235V, R236G, D239N, I245F, D248E, L249-, R250-; p17: G11S, K18R, R20Q, R30K, I34L, V46I, E55G, G62E, K76R, V82I, Q90N, T122I, V128I, Q130R; p24: S41T, V86A, I91H, A92P, G116A, E180D, K203R; p6: S25P; p7: F6V, N8D, R10K, T12V, E21V; pro: I72V, V77I, R87K; rev: D11E, L13I, T15A, I18L, K20R, F21L, S30N, S54W, G57E, W58R, Y63L, A68-; tat: T23S, N24K, K29R, P59H, N61G, Q63E, V67A, S68P, P77S, P84Q; vif: R19N, Y30H, I31V, K33G, A35V, K36R, Y44H, S46N, R50K, K63R, H127Q, S130R, T167I, H183R; vpr: Q3*, D7N, V37P, G41S, A55T, V57I; vpu: P3H, I6E, V10A, V21I, Q36E, D40E, L61V, V65M, D78N"}}}]},{"name":"B_NODE_0000004","node_attrs":{"div":0.14568,"clade_membership":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C1220T","C1996T","G2470A","C2909G","A3196G","A3264G","C3303T","A3304G","G4150A","G4723A","A4888G","C5495A","C5567A","C5614T","T5626G","G5775A","A6326G","A6602T","-6703A","-6984C","C7024T","A7158C","A7373G","A8503C","A8739G","G9016A"],"RT-p51":["P272A","K390R","T403M"],"RT-p66":["P272A","K390R","T403M"],"gp120":["T250S"],"gp41":["D113N"],"p17":["K76R"],"tat":["T40K","T64N"],"vif":["S46N"]},"labels":{"aa":"RT-p51: P272A, K390R, T403M; RT-p66: P272A, K390R, T403M; gp120: T250S; gp41: D113N; p17: K76R; tat: T40K, T64N; vif: 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28N","M345T","T359S","Q361E","S365-","T366-","W367-","N369-","T371-","N378-","N379-","T380-","D384-","T385-","M398L","L414K","T416S","N432-","N433-","N434-","N435-","E436-","T437-","D446N","R448K","K482R"],"gp41":["I4V","M7L","A14T","T18A","V24I","R46K","K77R","I84L","A96T","D109E","E110Q","N113D","E119Q","L130I","E136S","E137A","N140L","K144Q","E148K","D153N","K154T","Q199K","H209R","A212N","R231K","R233T","G235I","S251N","R259H","L264I","A268V","I270T","E272G","A281I","Q290K","N298K","L304F","N305D","V321I"],"nef":["S8-","S9-","R21-","R22-","A23-","E24-"],"p1":["K4R","H9S"],"p17":["E55G","R76K","K91R","V94I","A119T","Q127P"],"p2":["N9S","S10Q","A11S","T12A"],"p24":["I91V"],"p6":["S3N","P11L","E19G","S25P","A39T"],"p7":["T12A","T50N"],"pro":["L63Q","I64V"],"rev":["D11Q","T14A","T15A","F21V","Y23H","S30K","Q51H","R53N","T62S","P67S","T82N","S99N","I102V","A108E","*117E"],"tat":["K29R","T39M","G42A","R57T","Q60R","N61S","Q63E","V67G","L69P","S70P","P77T"],"vif":["K33R","K36N","G37K","N46S","K91T","L109I","L125V","I128R","T151A","I154R","T155K","K157I","R159T","T167A","H192R"],"vpr":["T19A","S28N","V37P","Q66T","Q77L","R85P","S94R"],"vpu":["S3L","L4Q","Q5-","L7V","A15V","L27A","R41K","I43L","E48D","V65-"]},"labels":{"aa":"INT: V31I, K111Q, T112V, S119P, S230N; RT-p51: K103Q, K122E, S162C, K211H, A272P, I329V, G333E, Q334H, F346Y, T377I, R390K; RT-p66: K103Q, K122E, S162C, K211H, A272P, I329V, G333E, Q334H, F346Y, T377I, R390K, L452S, L517I, I556V, K558R; gp120: S1N, E4N, T21N, D34S, T35A, V37A, V56E, N64D, I80V, T100N, -106A, -107N, N109A, T110N, N111A, N113-, S114-, S115-, G124R, E125D, M126I, I133V, D139N, Y149N, K150T, D157-, N158-, D159-, N160-, T161-, S162-, V172T, Q175H, D202N, K204M, T208S, V242I, Q259H, E262A, I281M, Q300R, T308E, N312K, A318V, -326G, N327H, -328N, M345T, T359S, Q361E, S365-, T366-, W367-, N369-, T371-, N378-, N379-, T380-, D384-, T385-, M398L, L414K, T416S, N432-, N433-, N434-, N435-, E436-, T437-, D446N, R448K, K482R; gp41: I4V, M7L, A14T, T18A, V24I, R46K, K77R, I84L, A96T, D109E, E110Q, N113D, E119Q, L130I, E136S, E137A, N140L, K144Q, E148K, D153N, K154T, Q199K, H209R, A212N, R231K, R233T, G235I, S251N, R259H, L264I, A268V, I270T, E272G, A281I, Q290K, N298K, L304F, N305D, V321I; nef: S8-, S9-, R21-, R22-, A23-, E24-; p1: K4R, H9S; p17: E55G, R76K, K91R, V94I, A119T, Q127P; p2: N9S, S10Q, A11S, T12A; p24: I91V; p6: S3N, P11L, E19G, S25P, A39T; p7: T12A, T50N; pro: L63Q, I64V; rev: D11Q, T14A, T15A, F21V, Y23H, S30K, Q51H, R53N, T62S, P67S, T82N, S99N, I102V, A108E, *117E; tat: K29R, T39M, G42A, R57T, Q60R, N61S, Q63E, V67G, L69P, S70P, P77T; vif: K33R, K36N, G37K, N46S, K91T, L109I, L125V, I128R, T151A, I154R, T155K, K157I, R159T, T167A, H192R; vpr: T19A, S28N, V37P, Q66T, Q77L, R85P, S94R; vpu: S3L, L4Q, Q5-, L7V, A15V, L27A, R41K, I43L, E48D, 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E11D, S24N, S39R, A91T, I113V, S119P, T206S, S230N; RT-p51: K20R, S105A, I202V, E204D, M245V, E248D, K281R, V293I, V317A, S322E, Q334E, M357T, T386V, T403I, E404D; RT-p66: K20R, S105A, I202V, E204D, M245V, E248D, K281R, V293I, V317A, S322E, Q334E, M357T, T386V, T403I, E404D, E449D, V467I, T470M, H483Y, I517V, A554N, V559I; gp120: A3G, E4N, Q5W, L6-, T35P, V57L, -107T, N108S, N113T, S136H, I137T, K143T, E144A, Y145-, K150N, V154E, T174R, N201R, K203T, E241-, I242V, S263T, N267D, T269I, H280N, A291T, T292K, G293A, D294I, S306T, R307K, N311E, N312D, R322S, -326Q, T330S, V332T, T360S, Q361K, N364H, S365K, -368N, N369S, -370S, -372K, -373T, -375E, -376A, N378S, -379N, -380G, -381N, R412A, Q414P, R416S, S418V, N435D, E436D, T439I, K462R; gp41: M54L, A101N, K106N, D109G, M115L, D125S, D129A, L130Q, T133S, Q147K, N160T, T165S, L210H, A212V, P213A, H258R, R259Q, D262N, L265S, V267A, V322G, G326W, R334T; nef: G3S, R8S, -10V, -11V, E18D, A49S, A83S, E93D, I101V, Y102W, K105R, V114I, H116N, Y135F, V148D, E155K, G159R, N161D, C163R, M168E, Q170L, R178K, M182R, K184R, H192K; p1: H9S; p17: L8I, R15K; p2: S5N, V7M, N9G, A11V, T12M, I13-; p6: T23A, E29G, P30-, I31-, K33Q, L35K, K42R, S50L; p7: R7K, K11R, T12A, N27H, K47R; pro: N37S, H69Q; rev: D9E, D11E, K14N, L18V, P31R, Q53R, T62N, L78I, R80K, D84N; tat: R7E, D61H, T64S, S68P, A74T, S75T, P77S; vif: R19K, K37N, R41K, S46N, A62S, I66V, D78E, Q105R, S118T, I124L, S130R, Y147H, R167K; vpr: S28R; vpu: P3T, L7V, L27F, A63T, E66D"}}},{"name":"KT124779","node_attrs":{"div":0.20632,"accession":"KT124779","clade_membership":{"value":"B"},"country":{"value":"DE"},"date":{"value":2010.0},"Strain_name":{"value":"556743"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["A371T","A380G","A386G","T396C","A423C","T426C","C467T","T485G","G491A","A494T","A499C","T506C","G508A","C525T","A530C","G542A","A566T","A578C","G607A","G612A","A618G","A620C","T641G","A652C","G656A","C662T","A663G","A697G","G712A","C713T","G740A","T858C","C872T","A881G","A959G","A986G","T1052C","A1151G","C1211T","C1220T","C1253T","C1316T","T1322C","A1346G","A1382T","C1406A","T1421G","T1422C","A1442G","A1458G","G1476A","T1482A","T1502A","T1511C","G1532A","C1535T","A1543G","G1562A","A1691G","A1719-","G1720-","C1721-","T1722-","T1723-","C1724-","A1725-","G1726-","G1727-","T1728-","T1729-","T1730-","G1731-","G1732-","G1733-","G1734-","A1735-","G1736-","G1737-","A1738-","G1739-","C1741T","C1744T","A1745G","T1752C","G1763A","A1781C","G1840A","C1913A","C1987T","A1988G","C1996T","T1999C","A2002G","A2023G","C2044T","C2080T","C2083T","T2101C","A2113T","G2173A","A2216T","A2242G","C2263T","T2269C","G2422A","T2440C","C2467T","G2470A","T2485C","T2494C","A2519G","T2536C","T2542C","A2579T","C2596T","T2597C","A2614G","T2638C","C2708T","C2714A","T2724G","G2728A","A2738G","C2739A","A2755G","G2828A","T2829A","G2869A","C2909G","A2920G","A3001G","A3031G","A3071G","A3096T","A3130T","G3162A","A3196G","C3223T","G3236A","T3252C","A3264G","T3266C","C3346T","G3364A","G3379A","A3400G","T3445C","A3447G","G3477A","A3487G","G3490A","T3493G","T3497A","T3550C","T3644A","A3655G","G3694A","T3778C","A3781G","A3805C","G3925A","C3940T","A3949G","G3961A","C3976T","A4012C","A4060G","T4075C","A4076C","G4150A","G4177A","T4258C","G4366A","A4432G","C4475T","A4567G","A4570T","A4643C","G4659A","G4673A","T4674C","C4728A","C4820T","G4829A","A4860G","G4861A","A4888G","C4890T","T4912A","G4913A","A4937G","T4943C","A4950C","T4952A","T4959G","G4966A","A4968T","A4976C","C5006A","C5027T","C5034T","A5042C","A5059G","A5096G","G5143A","C5145G","T5147G","C5162A","T5170G","G5187A","A5215C","T5237C","A5330G","A5355-","C5356-","T5357-","G5359A","A5362C","G5363A","A5446C","A5447C","T5487C","C5495A","A5496G","A5556G","C5563A","T5576C","G5599A","A5613C","A5622G","T5627C","G5653A","C5678G","G5685A","A5721G","G5729A","A5746G","G5747C","G5775A","C5797T","T5799-","T5801-","G5802-","G5803-","G5808-","-5812G","-5813T","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","G5858A","C5878A","G5882A","C5916A","C5956T","G5963A","T6007C","A6030G","T6049C","G6088A","T6101C","A6113G","C6153A","T6154G","-6174G","-6175G","A6179G","-6180A","G6195T","T6196G","A6200G","G6201A","-6204C","-6210T","-6214A","G6218-","G6220-","A6221-","G6224-","G6225-","A6226-","G6227-","A6228-","A6229-","A6230-","T6231-","A6232-","A6233-","A6234-","A6235-","C6238T","T6242A","C6253T","C6262A","A6263T","A6269G","A6270G","T6271G","A6273C","G6274T","A6275-","T6276-","G6277-","C6278A","A6281C","-6287A","A6288G","T6289G","A6292G","C6293A","T6299A","C6318T","G6323A","A6324G","A6330G","T6331G","A6333C","T6334A","G6339T","C6340G","G6349A","A6353C","G6354A","T6355C","A6374T","G6392A","C6397A","A6403G","T6424C","G6451A","T6493C","G6526A","G6578A","G6604A","G6647C","A6649G","A6734G","T6735A","A6736T","A6770T","T6772A","A6779C","C6790T","A6799C","A6801G","A6803G","A6820G","-6830A","-6831G","-6832G","A6836-","A6837-","T6838-","C6892T","C6894A","-6957G","G6963C","-6968T","-6969G","-6972A","-6975C","-6978C","-6979A","-6983T","-6985A","A6992-","C6993-","T6994-","G6995-","T7003-","-7004G","-7009G","C7012T","C7020A","C7024T","G7026A","A7088C","T7099A","G7101A","A7102G","C7124T","A7151G","C7153G","T7159C","A7161G","A7169G","G7181A","G7182T","G7197A","G7198A","A7237T","A7238C","G7246A","A7306G","A7315G","A7348G","A7373G","A7376G","T7433A","G7453A","C7463A","G7552A","A7604G","C7625T","T7626A","G7627T","G7628T","A7629C","G7630A","T7642A","C7651A","G7666A","T7675C","C7678T","G7688A","A7690T","A7743T","A7744C","G7759A","G7790A","C7792T","A7799G","A7832G","G7835A","A7846G","G7857A","T7888C","A7915G","C7941A","C7951A","A7963C","G8001C","A8008G","G8017A","A8032G","C8047T","T8112C","C8171A","G8204A","T8209C","T8227C","T8268C","A8276G","T8279G","A8308G","G8317A","T8321G","T8322C","G8330T","C8331T","G8354A","T8366A","-8370A","-8374G","A8396G","G8404A","C8406A","G8407A","T8426G","C8460T","G8476A","C8480T","T8505G","G8506T","T8507A","G8528A","G8554C","T8595G","C8640T","A8642G","T8646C","T8666A","T8685C","G8789T","G8795T","C8796A","G8830C","T8832C","A8851G","G8852A","T8864C","A8874G","G8882A","G8929A","A8932T"],"INT":["E10D","M50I","I101L","L234F"],"RT-p51":["E6D","M41L","I142V","S162C","Q207K","L210W","T215D","M245K","P272A","I326V","Q334L","R356K","V381I","K390R"],"RT-p66":["E6D","M41L","I142V","S162C","Q207K","L210W","T215D","M245K","P272A","I326V","Q334L","R356K","V381I","K390R","K451R","R461K","S468T"],"gp120":["A2T","V10I","T21N","V37I","E59G","S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E10D, M50I, I101L, L234F; RT-p51: E6D, M41L, I142V, S162C, Q207K, L210W, T215D, M245K, P272A, I326V, Q334L, R356K, V381I, K390R; RT-p66: E6D, M41L, I142V, S162C, Q207K, L210W, T215D, M245K, P272A, I326V, Q334L, R356K, V381I, K390R, K451R, R461K, S468T; gp120: A2T, V10I, T21N, V37I, E59G, S87G, T100K, D105N, -106V, -107R, S109D, S114M, -116D, -117T, -118S, -119M, -120T, G124-, E125-, I126-, K127-, S130T, S136K, I137L, N139G, K140T, M141K, K143-, Y145R, L147I, Y149N, P155L, D157S, D159G, N160T, S162M, S167H, T174S, V180I, E265Q, K309Q, K315N, Q316R, I317V, -326R, T347N, -368S, -370A, -372W, -373N, -375T, -376G, -384D, -385T, P389Q, R391K, R416K, N433E, E436G, T439V, G443I, R448K, K462Q; gp41: M24V, T25A, L44M, L108Y, D109S, D113E, D129N, Q147L, N157S, D163N, N166E, I177V, V178I, R185K, H209R, P213Q, E220D, R233T, G235R, I270T, Q290K, V301I, V322A, I325V, L340A, A343F; nef: -10M, -11G, R21K, R22K, D28E, H40Y, S45N, C55V, R71T, L85V, Y102H, D108E, Y115H, E151D, Q152K, C163S, Q170R, R178G, M194V, R196K, E197V; p17: E12D, R30Q, E55A, R58K, Q65H, R91K, E93K, K95D, D102E, E106A, K110E, D121G, S126N; p2: T12A; p6: S14I, F15M, R16-, F17-, G18-, E19-, E20-, T21-, T22-, S25P, E34D; p7: G4S, F6I, K26R; pro: P39T, I64V; rev: K14R, F21L, Q51H, T54A, D57N, T62D, P67S, A108E; tat: N24P, T39I, T40K, A58P, Q63K, V67A, P81Q, K85T; vif: R19N, V25I, M29I, Y30H, H48N, R92E, D101G, L109Q, N122Q, L125V, R127H, I128L, N140K, K158R, S186N, H187E, H192Q; vpr: P14R, Y15D, L20I, S28N, Y45H, T84Q, Q86R, R88A, A89R; vpu: L7A, A16T, T24S, I28L, R41K, 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D78N"}}},{"name":"AB287366","node_attrs":{"div":0.21448,"accession":"AB287366","clade_membership":{"value":"B"},"country":{"value":"JP"},"date":{"value":2005.0},"Strain_name":{"value":"DR7060"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["A47G","C152T","G206A","G265A","C281A","G354A","T396C","A419G","A435T","T495A","A521G","A530G","G542A","T635C","C747A","T749G","T824C","C827T","A839G","T852A","C926A","G963T","A968C","G987C","A1074G","G1077A","A1079C","A1090G","C1118T","A1127G","G1205A","C1220T","G1388A","A1415G","T1421C","T1444C","T1452A","G1455A","A1458G","G1477A","T1481G","A1485G","A1528T","T1559C","A1588G","C1598T","G1619C","G1621A","T1676C","G1769A","C1775A","G1784A","A1804G","A1819G","A1839G","G1846A","A1852G","A1915G","A1930G","C2003A","T2005G","G2009A","G2027A","C2080A","T2158C","A2215G","A2230G","C2281T","C2353T","A2419G","G2422A","G2428A","T2443C","A2459G","G2518A","A2519C","T2608C","A2623G","C2635T","G2656A","A2726G","A2727G","C2749T","A2764G","T2829A","G2902A","A2929T","G2984A","A3001G","G3046A","A3080G","C3095A","A3097C","A3124G","A3136G","G3173A","A3193G","C3225A","C3232T","T3252C","T3266C","T3328C","A3439G","A3443T","T3497C","G3520A","G3523A","T3530C","A3535G","C3542T","G3553A","T3613A","A3703G","A3727C","T3754C","G3755T","T3829C","C3843T","T3853C","G3859A","T3904C","T3943C","G3961A","C3976T","A3982G","A3985G","A4012T","A4060G","A4076C","A4105G","A4145G","A4174G","A4178G","G4267A","G4294A","A4306G","A4384G","C4543T","G4582A","A4683G","G4694A","T4702C","G4708A","C4726G","A4737G","G4741A","A4748G","A4760G","A4782G","A4857G","G4881A","A4882C","C4898T","T4910C","T4925C","A4937C","T4952G","A4956C","G4966A","T4969G","A4976T","T4988C","A5012G","T5016A","G5040A","A5046G","A5049G","A5059G","T5062G","T5073C","A5085G","G5086C","G5100C","A5103C","G5176A","A5179G","T5188A","T5194A","A5200G","C5213G","A5233G","C5242A","T5292C","A5312G","A5330G","A5335G","T5354C","A5355C","G5359A","G5370A","A5397T","G5427A","A5448T","T5487C","A5491T","A5493G","A5494T","G5501C","C5502A","C5511T","T5515C","C5554A","G5557A","A5558G","A5587G","A5601G","C5611T","A5612C","A5613T","T5616A","T5617C","A5619G","C5620T","A5622T","G5629A","A5643T","G5653A","T5669C","G5673A","A5680G","C5713G","G5730A","G5747C","-5800G","-5805G","C5917T","A5965G","T6007C","G6023T","A6092G","C6097A","T6100C","T6134C","T6160C","A6167G","-6170T","-6171A","-6172T","-6174A","-6180G","A6186C","C6190T","G6201A","T6202C","-6203T","-6204T","G6207A","A6209-","G6211-","-6218G","-6219A","-6222A","-6223G","T6242A","G6261T","C6262G","A6275C","T6276A","G6311A","T6315C","A6320G","A6324G","T6325G","A6326G","A6344G","T6345C","G6368A","T6369C","T6385C","A6394G","G6425A","C6427A","A6443C","G6466T","A6476T","A6489C","G6547A","C6563A","A6574T","A6584G","A6587C","A6602T","A6605G","T6637C","G6638A","A6639G","A6640G","G6644A","G6647C","A6649C","C6673T","G6743A","A6767C","A6781C","A6809G","T6810A","G6819A","-6830G","-6831G","-6832G","A6833G","-6835G","T6849A","C6850A","T6856G","A6858C","A6865G","C6894G","C6935G","A6936G","G6940A","A6947G","G6948A","C6951G","T6953A","G6954T","-6957T","T6958G","G6963A","G6970-","T6976-","A6986-","T6988-","-6997A","-6998G","-6999G","-7000T","T7003-","T7006C","-7008A","-7009C","A7010C","A7021G","G7048A","A7088C","C7124T","T7144A","T7147A","A7154G","A7155G","G7160A","G7162A","C7165T","C7171T","G7190A","G7197A","G7246A","A7256G","A7275G","G7276A","A7315G","A7376G","T7433C","G7440A","G7517A","G7519A","G7589A","A7607T","G7608C","T7622A","C7625T","T7626A","A7627T","G7631A","T7642C","G7660A","A7689G","A7690C","C7702T","T7715G","G7720A","G7759A","C7770A","A7771C","A7799C","T7813C","A7846G","A7868G","G7885A","C7906T","T7968C","A7971G","A7998G","G8001C","C8005A","A8006G","A8008G","C8044G","C8051T","G8052T","G8114C","T8155C","T8210C","T8214A","G8242A","T8268G","T8281G","A8288T","A8323C","G8365T","T8369A","G8372-","T8375-","C8383A","A8441C","G8446A","A8455C","A8468G","A8469C","G8531T","G8537C","C8590G","T8603C","C8687T","T8740C","C8809T","A8812C","A8823G","T8829G","G8830T","T8832C","G8846T","G8848A","C8849T","G8888A","G8922A","G8924C","C8975G","T8976A","T9012C","C9017T","T9051A"],"INT":["A23V","I101L","T124A","I135V","I203M"],"RT-p51":["K122E","I142L","K211G","Q278H","E297K","I329V","Q334N","A360T","T377K","I386T","T403M"],"RT-p66":["K122E","T135I","I142L","K211G","Q278H","E297K","I329V","Q334N","A360T","T377K","I386T","T403M","T450S","S468P","H483Y","A554S"],"gp120":["V57L","I80V","-106Y","-107N","N111T","-116N","-117L","-118K","-122E","-123K","S130T","S136M","K138E","M141Q","Q142K","V153I","V154A","I156V","D157G","N158G","M164A","V172T","A191T","I197L","N201K","K204N","T208S","K212T","L237I","E240D","I244V","T250S","N251D","E262R","V264I","E265H","D297N","I305L","K309D","I319E","R322K","-326G","N327E","V332K","Q335P","T347S","Q361G","S365D","T366S","W367M","-368L","-370D","-376G","-377N","-379L","I386-","T387-","R412Q","N434G","E436K","D446N","R448K","I468V","K474R"],"gp41":["T25A","R46K","V72I","A96T","A101T","S107T","L108Y","D109E","E110K","D129G","S138A","A156D","N166Q","T189A","I222T","E223G","D232G","R233T","D247E","R250L","V271L","F304Y","V322G","G326W","I329F","L340F"],"nef":["R8L","S9R","S14D","R35Q","E38A","I43L","E63D","E65D","A83G","V133T","A156V","N157T","N161D","C163V","M168I","S169N","V182I","M194I"],"p17":["V7I","I34L","S54T"],"p2":["V7A","S10T","A11T","T12A"],"p24":["L6M","S41T","A78S","E79D","V86P","I115V","A116T","N120S"],"p6":["D32E","K42R","N47S"],"p7":["G4D","N5K","R7G","E21V","K41R","E51D","R52K"],"pro":["K14R","H69K","A71T","V77I"],"rev":["T15A","Q51H","Q53R","K54A","R66G","A68V","C89S"],"tat":["R7S","K24N","I39L","T40S","G42A","Y47H","Q60K","D61S","K71E","S87P"],"vif":["K33G","V39S","R41K","T47S","I51V","S52N","I66V","K91E","S95R","D99T","E117D","N122K","I124L","R127H","I128R","S144T","A152T","I154V","T155A","K158R","I159R","R167A","D172H"],"vpr":["S28R","P37A","I63T","I70V","I84L","R85Q","A89T"],"vpu":["Q2S","P3Q","Q5Y","A8T","L12F","A16T","V21A","I25V","Q36E","R47T"]},"labels":{"aa":"INT: A23V, I101L, T124A, I135V, I203M; RT-p51: K122E, I142L, K211G, Q278H, E297K, I329V, Q334N, A360T, T377K, I386T, T403M; RT-p66: K122E, T135I, I142L, K211G, Q278H, E297K, I329V, Q334N, A360T, T377K, I386T, T403M, T450S, S468P, H483Y, A554S; gp120: V57L, I80V, -106Y, -107N, N111T, -116N, -117L, -118K, -122E, -123K, S130T, S136M, K138E, M141Q, Q142K, V153I, V154A, I156V, D157G, N158G, M164A, V172T, A191T, I197L, N201K, K204N, T208S, K212T, L237I, E240D, I244V, T250S, N251D, E262R, V264I, E265H, D297N, I305L, K309D, I319E, R322K, -326G, N327E, V332K, Q335P, T347S, Q361G, S365D, T366S, W367M, -368L, -370D, -376G, -377N, -379L, I386-, T387-, R412Q, N434G, E436K, D446N, R448K, I468V, K474R; gp41: T25A, R46K, V72I, A96T, A101T, S107T, L108Y, D109E, E110K, D129G, S138A, A156D, N166Q, T189A, I222T, E223G, D232G, R233T, D247E, R250L, V271L, F304Y, V322G, G326W, I329F, L340F; nef: R8L, S9R, S14D, R35Q, E38A, I43L, E63D, E65D, A83G, V133T, A156V, N157T, N161D, C163V, M168I, S169N, V182I, M194I; p17: V7I, I34L, S54T; p2: V7A, S10T, A11T, T12A; p24: L6M, S41T, A78S, E79D, V86P, I115V, A116T, N120S; p6: D32E, K42R, N47S; p7: G4D, N5K, R7G, E21V, K41R, E51D, R52K; pro: K14R, H69K, A71T, V77I; rev: T15A, Q51H, Q53R, K54A, R66G, A68V, C89S; tat: R7S, K24N, I39L, T40S, G42A, Y47H, Q60K, D61S, K71E, S87P; vif: K33G, V39S, R41K, T47S, I51V, S52N, I66V, K91E, S95R, D99T, E117D, N122K, I124L, R127H, I128R, S144T, A152T, I154V, T155A, K158R, I159R, R167A, D172H; vpr: S28R, P37A, I63T, I70V, I84L, R85Q, A89T; vpu: Q2S, P3Q, Q5Y, A8T, L12F, A16T, V21A, I25V, Q36E, 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R324G, A328G, I332V, T334I, A343L; nef: R8L, -10R, I43L; p17: R15K, S54A, K76R, V84T, V94I, D102E, S111R, K114-, A118T, T122A, G123A, N124D, S126N, Q127K; p2: V7I, T8I, S10T, I13T; p24: I15L, E75D, E79D, I91V, N120S, T148V, S178T; p6: S3N, T23-, S25P, I31T, K42R; p7: K11R, K20R, R29K; pro: K20R, V77I, L89M; rev: S5R, D11E, F21Q, L22I, R41Q, Q53R, S61T, A68T, E69D, P72D, D88G, I102V, E111D, S112T, K115E; tat: Y47N, P58T, V67A, S68D, L77F; vif: H27Y, M29K, I31R, K33G, K37E, A62S, I66V, S118A, N122Q, R127H, S130R, D134N, R167S; vpr: D7N, S28R, H40G, G41N, A55T, L67M, R77H, T84I, A93S; vpu: L4P, Q5E, A8T, V15A, A16I, I18L, 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D6S, K7A, S17N, V32I, I72V, V151I; RT-p51: K122E, D123N, I142V, T165I, E169D, I180V, I202V, Q207K, P294T, S322T, Q334N, G335D, R356K, A400T; RT-p66: K122E, D123N, I142V, T165I, E169D, I180V, I202V, Q207K, P294T, S322T, Q334N, G335D, R356K, A400T, T470M, H483Y, L491S, K527Q, V531I; gp120: Q5E, T21N, D34S, V37A, V57R, N64K, Q86E, T100A, D105-, S109C, T112A, N132W, S136Q, K143R, Y145H, K150A, V153I, N158S, D159S, T161N, S167N, V172I, T174K, A196S, K204Q, E240G, T255N, E265I, P285W, A288T, F289L, H302Y, K309H, E311G, N312R, K315E, R322N, -326T, Q335R, P341L, V344R, G351R, T360S, Q361K, S365G, -368Y, -370V, -372H, -373K, -375E, -376N, -377G, -379D, -380N, -381E, -385T, K404R, R412A, R416N, L425I, N433E, N434S, N435A, E436P, T437E, T439I, I468V; gp41: V2I, M24L, Q32L, M54I, E110K, D129E, L130E, N133K, E137A, E148D, N160D, D163N, N166Q, I193L, V197C, Q199E, P219L, I222T, A243P, C253F, V267L, R276H, A281I, S293G, Q294R, A306F, T307I, V321T, V322L, G326F, I329F; nef: -10R, -11D, S14A, A15N, 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D74L"}}},{"name":"KT427740","node_attrs":{"div":0.21956000000000003,"accession":"KT427740","clade_membership":{"value":"B"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_PE019"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C151A","T153C","T163G","T200C","G224A","A256-","A369C","A398G","G407A","A417C","A499G","G508A","C516A","C525T","T570C","T593C","C603A","A604T","A605G","T614C","C623T","C641T","G644A","G678A","G693A","G696A","C707T","G709A","T718G","T734C","T749C","G818A","A903G","A938G","G987C","T988C","G989A","T992G","G1019A","A1025C","T1058C","G1067A","G1077A","G1078C","A1124G","C1136T","T1148C","C1182T","A1265C","G1271T","T1335C","A1349G","C1350A","C1354G","C1362T","C1439T","C1459A","G1476A","T1481C","G1495A","A1498G","C1523T","T1547G","G1568A","G1589A","C1598T","A1622G","T1628G","A1644C","A1715G","A1746G","G1769A","T1771A","T1790C","A1839G","G1920A","A1926G","A1982G","C1987T","A2002G","C2098T","A2152G","A2200G","T2269C","G2341A","T2347G","A2350G","C2353T","C2356T","T2365G","A2396G","G2411A","C2420T","T2440C","C2464A","G2470A","C2503T","A2569G","C2596T","A2617G","C2626G","G2660A","T2672C","G2710A","A2726C","T2770C","T2829A","G2830A","T2873C","A2882G","A2884G","G2887A","T2899C","A2925G","A2950G","A2956G","A2985T","C3013T","G3016A","C3023T","T3045C","G3093A","A3103G","A3107T","A3130T","G3188A","A3196G","G3221T","G3236A","A3264G","T3266C","C3303T","C3352T","T3355C","A3367G","T3368C","T3399C","C3496T","T3497C","T3544C","T3551C","G3685A","C3692G","A3819T","A3862G","C3908A","C3922T","A3937G","T3946C","C3962T","A3988G","A4063C","T4075C","C4110G","C4132T","T4135C","C4146A","T4153C","G4183A","T4234C","A4264G","T4316C","A4376G","G4467A","T4498C","A4519G","G4539A","T4540G","G4555A","A4570C","T4606G","A4643C","C4665T","T4670C","G4684A","T4702C","T4703C","A4721C","C4726A","G4735A","A4751G","G4835A","A4838G","T4842G","G4856A","A4858G","G4887A","C4890T","C4902T","T4952A","C4965G","G4966A","T4969G","A4976C","T4988A","C5019T","G5024A","A5037G","C5062A","A5063T","A5069T","T5084C","G5086A","A5127G","A5128G","G5225A","A5282T","T5292C","C5294T","T5311C","C5321T","A5336C","C5356T","A5360G","A5376C","A5431G","C5445A","T5466C","T5484C","A5493G","C5495A","G5501C","A5560G","C5563A","A5564C","G5565A","A5566G","C5569A","T5576G","T5577C","C5602T","C5611G","A5613T","T5617A","T5636C","C5679T","C5686A","C5688A","T5689A","A5694G","T5697C","G5730A","T5731A","G5737A","A5746G","G5747T","T5778C","T5791G","-5800G","-5802G","-5804A","-5805G","-5806A","-5807T","-5809G","-5810G","C5827G","G5845A","G5856A","T5857A","A5868C","T5870C","C5924T","A6016G","G6037A","A6044G","A6066G","T6085G","G6088A","A6092G","T6166C","A6173-","-6180T","A6186C","G6198A","-6203A","-6204C","A6212G","-6213A","G6220A","G6225A","A6229G","C6253A","A6268C","G6277A","C6278A","A6282T","A6286C","A6304G","A6316G","A6327C","G6349A","T6351C","A6376C","G6466A","A6484C","C6499T","A6544G","G6604A","A6628G","G6631T","G6634C","T6637C","G6638A","A6639C","T6641A","T6643A","A6649T","A6654C","A6659G","C6660T","C6673T","G6712A","A6734C","C6752A","T6772C","A6779G","A6788G","A6803G","T6810A","A6820G","A6826C","A6833-","A6837G","G6848A","T6849G","T6856G","A6859G","A6881G","C6894G","T6896G","A6937G","T6958-","-6963A","T6964A","T6967A","A6971C","-6972T","-6973G","A6974G","-6975A","-6977G","-6978A","-6979T","-6983A","-6985T","T6988A","-6989A","-6998A","-6999C","-7000A","-7002G","-7004A","A7007-","A7032G","A7040G","C7045T","G7047A","A7088C","A7132G","A7149G","C7153A","C7156T","T7159C","C7161G","C7164G","G7182C","T7228C","A7234G","G7246A","A7275G","G7281T","G7291A","C7311G","C7313A","A7322G","A7348G","G7375A","A7376G","T7386C","G7426A","C7480T","G7492A","G7501A","G7534A","C7590G","G7594A","T7622A","C7625G","G7668A","A7689G","A7690T","G7735A","A7763C","T7844C","A7847G","A7858G","G7862A","C7898A","T7932C","C7938T","C7939T","C7951A","A7962G","A8002G","A8029C","G8050A","C8065T","A8076G","A8086C","T8103C","G8105A","T8112C","C8146T","T8155C","T8156C","G8157T","T8164C","C8165A","C8167T","A8193G","A8196C","T8206C","C8221T","T8279G","T8290C","T8292G","A8297G","A8323T","G8329A","G8330A","C8331G","G8335A","G8356T","G8368T","-8370G","-8374G","C8386T","G8402A","A8516T","T8543A","G8588A","T8595G","T8613A","C8631A","A8635G","A8636G","C8640A","T8641A","A8642C"],"INT":["Y15F","L45I","E96D","T112R","T124N","F181L","I201V","R231K","S255K"],"RT-p51":["K101E","V106I","D123E","D177E","V189I","K211Q","M245K","K263E","K277R","E297V","V317A","G333E","T338S","V365I","A376S","V381I","K390R","T403I","V435A"],"RT-p66":["K101E","V106I","D123E","D177E","V189I","K211Q","M245K","K263E","K277R","E297V","V317A","G333E","T338S","V365I","A376S","V381I","K390R","T403I","V435A","S468P","L533V"],"gp120":["S1K","Q5P","V57L","N64D","N71S","H77Q","I80V","D105N","S109V","N111T","S115N","-116S","-117T","-118R","-120E","-121G","-123K","G124E","K138N","Q142K","K143L","E144D","K150T","N158T","I166T","Q259H","E262T","S263T","E265N","N267T","T269V","K294Q","Q300K","K309D","N312D","I317V","I31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Y15F, L45I, E96D, T112R, T124N, F181L, I201V, R231K, S255K; RT-p51: K101E, V106I, D123E, D177E, V189I, K211Q, M245K, K263E, K277R, E297V, V317A, G333E, T338S, V365I, A376S, V381I, K390R, T403I, V435A; RT-p66: K101E, V106I, D123E, D177E, V189I, K211Q, M245K, K263E, K277R, E297V, V317A, G333E, T338S, V365I, A376S, V381I, K390R, T403I, V435A, S468P, L533V; gp120: S1K, Q5P, V57L, N64D, N71S, H77Q, I80V, D105N, S109V, N111T, S115N, -116S, -117T, -118R, -120E, -121G, -123K, G124E, K138N, Q142K, K143L, E144D, K150T, N158T, I166T, Q259H, E262T, S263T, E265N, N267T, T269V, K294Q, Q300K, K309D, N312D, I317V, I319K, Q324H, -326S, N327-, V332S, N334K, I343V, T347S, F348V, N369-, T371-, T374-, -379E, -380T, -381Q, -382L, -383D, -384D, -385W, K393R, I396V, R398K, R412Q, R416K, N432S, N433K, E436G, T437S, G443A, K474R, R476I; gp41: T3G, L4I, M7V, M24I, T25A, V28A, S107T, L108V, R122K, D129G, K154Q, N166K, I182V, V187I, Q199K, L210P, T212V, E220G, L242F, H258R, R261S, V267A, A268T, I270T, W285L, L288I, K297R, N298T, L330R, I332V, L340F, A343S; nef: W5L, S9I, -10G, -11G, A15V, M20I, L85V, L91I, L97M, E98G, L100N; p1: I5L; p17: K12Q, K28Q, R30K, E55G, R58K, L61M, Y79H, Q90M, A115T, A120T, D121N, S125N, V128G; p2: T12N; p24: T58A, V86P, H87Q, M96I, G116T, E180D, P207T, A208G; p6: T23A, I31K; p7: G4S, R10K, K11R, N27K; pro: K14R, R41K, K43R, I62V; rev: R17Q, F21A, P31S, I52V, S61R, A68T, L73F, S86N, P100S, L103P, S106H, P107S, E116D; tat: R19G, T40K, G42A, S62G, Q63T, T64A, H65N, V67G, S75P, P77F, P81Q, K85E; vif: V7G, R19N, H27Y, K37E, V39A, E45D, T47N, R50K, S86A, K91R, R92K, D101N, N122K, R127D, I128R, D134E, T151A, T159N, R167K, K181G; vpr: Q8R, I60L, I63T, R77H, T84I, N91H; vpu: L4I, I7V, V10A, L27I, L42I, D44N, R47V, S62A, 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H73N"}}},{"name":"MF373127","node_attrs":{"div":0.22284000000000004,"accession":"MF373127","clade_membership":{"value":"B"},"country":{"value":"SE"},"date":{"value":2003.0},"Strain_name":{"value":"005SE"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C352T","A353C","G354A","A356C","G361T","T372C","A380C","G401A","G471A","C476T","C516A","A521C","C522T","A523C","G542A","C603A","G615A","A632G","G644A","A665G","A673G","A674C","A675C","C681G","A682C","G683A","A689T","C691A","A692C","G693A","C698A","C700A","A701C","G702A","G709A","A711G","G712T","C714A","G721A","C722T","A725C","A726C","A727C","T734G","G738A","T739A","A742T","G743T","A744C","G752A","C756G","A769T","G770A","A774C","T775C","C780A","A783T","G784T","C787A","T789G","A792T","A793G","T794G","A805T","T808A","T811A","G813A","G818T","A819T","A820T","G821C","G829A","G834A","G837C","T838C","A839C","T852A","C926A","T974C","G980A","G987C","T988C","T992G","A1025C","A1090G","T1091C","T1100C","A1101G","A1127G","C1169T","G1192A","C1229T","A1242G","C1243T","G1271T","A1274G","A1367G","A1400C","T1452A","C1460T","A1475G","T1484C","A1587C","A1601G","A1642G","A1686G","G1737A","C1768T","A1772G","G1784T","G1794A","A2241G","T2335G","A2413G","A2579T","A2618C","A2813C","A2818C","T2829A","A2842G","A2866C","C2909G","G2926A","G2947A","C2978T","A2981T","A3265G","A3280G","A3291G","A3292G","G3439A","G3483A","T3497A","G3529A","C3542T","A3592C","T3602A","A3619C","T3668C","A3919G","A3985G","A4081G","T4085C","A4112G","A4145G","G4174A","G4183A","A4293G","T4316C","G4376A","A4391T","A4397C","T4678G","T4679A","G4695A","G4696A","G4701A","C4726T","C4728A","G4764A","T4776A","G4778A","A4781G","A4888G","T4910C","A4951G","A5015C","A5046G","C5050A","T5072C","A5119G","G5140A","A5154C","A5159G","A5186G","T5188A","A5248T","T5260C","T5292C","G5363A","T5454C","A5461C","G5463T","A5545G","C5563G","A5566G","A5574G","T5576C","T5617G","T5618A","A5621T","C5651T","G5653A","T5686C","G5711A","T5739A","A5748C","A5790G","T5799C","-5800A","-5805A","-5806A","-5809G","-5810G","G5845A","G5856A","C5916A","G6020A","T6024G","A6030G","G6079A","C6097T","-6171G","T6178G","C6183A","C6190T","A6191G","A6194T","C6198A","G6201A","-6203G","-6204A","-6205G","A6209C","-6215A","A6222G","A6234G","T6245G","A6249C","A6251G","T6252C","C6253T","G6261A","A6266G","G6267A","A6273G","C6278A","G6280A","A6283T","T6287G","A6292T","T6294C","T6297A","T6299C","A6304T","T6306G","A6309G","C6318A","A6322T","G6323A","A6330T","T6351G","A6352T","A6360C","C6364T","A6367T","G6368A","A6374G","A6376C","C6377G","A6378G","G6379T","G6380C","A6389T","A6390C","G6391C","T6398C","G6403T","A6406T","T6414A","A6415T","C6416T","A6417G","C6428G","G6440C","G6442T","T6447G","A6448G","G6451T","T6452G","G6463C","G6466C","T6467G","A6470G","A6471C","A6476C","A6478G","T6485A","A6488G","A6490T","A6492T","G6498C","A6500C","T6504G","A6507C","A6512G","A6516T","A6520G","G6525T","A6532G","T6534C","T6536C","A6539C","A6543T","A6544G","T6551G","A6555G","A6560C","G6561C","A6571G","G6577A","G6581A","T6585C","G6588C","A6595C","A6597T","G6604T","T6641A","G6647A","T6655C","A6664G","A6669G","C6692A","A6693C","T6763C","A6773C","G6774A","A6803G","C6810T","A6834T","G6848A","C6935A","A6936G","G6948C","-6978A","-6979G","-6980A","-6981A","-6982A","-6984C","A6989C","A6990C","A7046C","G7101A","A7102C","A7111C","G7123A","G7137C","A7149T","A7155C","A7158G","G7160A","C7164A","T7165C","G7166A","C7174T","G7182C","A7202T","A7210G","A7215G","T7217G","A7221T","T7222G","A7229G","A7231T","A7239T","A7241G","A7246G","G7256A","C7264A","A7269C","C7272A","A7273T","A7275T","G7293T","G7295C","T7308A","G7310C","G7311T","A7313C","G7316C","A7322C","C7327G","C7354G","T7357G","G7361A","A7372G","C7429T","A7439C","C7463A","C7469A","G7508A","A7532C","A7540G","C7544T","G7549A","C7553T","T7575G","T7579C","C7645T","C7699T","G7709A","A7710T","G7726A","A7755C","A7796T","C7801T","A7818G","A7887G","T7888A","G7901A","C7906T","T7919G","C7934T","C7939A","C7950A","A7963C","A8006G","G8010A","T8013C","G8017C","G8030A","C8048G","T8097C","C8123A","A8142G","G8144A","G8161C","C8167T","G8170A","T8177A","C8209T","C8232T","C8236T","G8267A","C8320A","A8340G","A8364C","-8373G","-8374G","C8382T","A8390G","G8409A","A8425C","C8440T","C8460T","A8469G","G8588A","A8597T","C8607T","A8608T","T8646C","C8648T","T8666G","T8758A","A8762G","C8771T","T8786A","C8810T","G8814A","A8815C","C8840T","T8843C","G8848A","A8879G","C8903T","T8914A","T8918A","G8924A","G8933A","G8942A"],"INT":["I113V","T124A","K173R","F181L","V201I","T206S","I208L"],"RT-p51":["K49R","S162C","N175H","T240P","V245E","P272A","T296S","E399G"],"RT-p66":["K49R","S162C","N175H","T240P","V245E","P272A","T296S","E399G","R463K","S468T","H483Y","L503I"],"gp120":["S1N","T3S","T21N","V56I","V57G","E59G","-106C","N108K","N109D","N111Y","N113W","K123R","K127R","F131V","N132T","I133A","S136D","R138E","K140R","M141R","Q142K","K143N","Y145D","L147S","F148Y","Y149H","K150N","L151R","D152G","V154I","P155Q","D157N","N159I","I166M","N169T","V172I","T174A","Q175G","A176P","K179S","F182L"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I113V, T124A, K173R, F181L, V201I, T206S, I208L; RT-p51: K49R, S162C, N175H, T240P, V245E, P272A, T296S, E399G; RT-p66: K49R, S162C, N175H, T240P, V245E, P272A, T296S, E399G, R463K, S468T, H483Y, L503I; gp120: S1N, T3S, T21N, V56I, V57G, E59G, -106C, N108K, N109D, N111Y, N113W, K123R, K127R, F131V, N132T, I133A, S136D, R138E, K140R, M141R, Q142K, K143N, Y145D, L147S, F148Y, Y149H, K150N, L151R, D152G, V154I, P155Q, D157N, N159I, I166M, N169T, V172I, T174A, Q175G, A176P, K179S, F182L, E183D, I187N, H188C, P192A, A196P, L198R, K199N, C200G, K203N, K204N, F205V, N206A, T208P, C211S, K212D, N213I, S215T, T216P, V217G, Q218P, T220A, H221L, R224M, V227A, S228P, T229P, Q230L, L233V, N234S, S236P, V243I, I244T, R245T, E247D, N248I, S263T, E265K, N272S, H280T, R307Q, I317V, A319V, N327M, V332I, Q361R, S365T, -375E, -376K, -377S, N379P, M398L, R428T, N432M, N434T, N435S, D436N, T437N, E438K, T441I, G443A, N450Y, E454G, L455V, Y456L, K459D, K462I, I463V, V468I, K472T, A473D, K474M, R480I, E481Q; gp41: V2E, G3L, I4L, G5R, M7L, F8L, S17R, R46Q, L54M, Q56K, V69I, K77Q, L81F, L84F, L91R, E136I, E151A, T165S, K172R, N195R, G200R, F206V, H209-, L210-, P211-, A212-, P216H, E220D, S235D, R236Q, L237S, A243T, L249V, L265S, A268S, L274M, E280G, A281I, W286C, W292R, A310V, V322I, L340A, L345I; nef: -11G, A23T, D28A, A33V, H40Y, I43V, L85F, H89F, Y102H, D108E, V133I, F139Y, K150Q, E158T, S169N, F191Y, H192Q; p1: K4R; p17: S6F, V7I, S9I, E15D, I34L, L61M, Q63S, Q90K, V94I, K113S, K114Q, Q116A, A119-, A120-, G123E, S125R, S126N, Q127N, S129K, Q130V; p2: N9T; p24: V3K, Q4L, N5H, L6R, Q9E, Q13L, I15P, P17-, R18-, A22V, V24A, K25W, E29K, S33N, E35K, V36P, S41T, V86P, H87Q, E98D, N120S, I124V, R154K, T171V, E180D; p6: S3G, E20K, P30L, I31M, A39T; p7: T12P, K41Q; rev: K20R, P29L, G57Q, W58R, S61D, S67R, S86I, S92Y, S99N, E105Q, P107S, A108T, L110*; tat: K29H, R57G, Q63E, T64A, V67A, P77Q, P81T, K85T; vif: I31R, G37K, V39I, T47I, H48N, G60R, L64I, N101G, L109M, N122S, T151A, I154V, T155N, Q178R, 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N27S, K111T, T124S, T125A, I204V, S230N; RT-p51: S68G, I135R, S162A, Q207K, K211A, V245T, P294A, I329L, G335D, R356K, M357L, E370D, K390R, V435E; RT-p66: S68G, I135R, S162A, Q207K, K211A, V245T, P294A, I329L, G335D, R356K, M357L, E370D, K390R, V435E, D460N, R461K, V467I, S468H, H483Q, L491P, V536I, K558R; gp120: E4D, Q5D, L6K, K31R, A32S, V37K, V40I, V57K, -106H, N108-, N109-, T110-, N111-, T112-, N113-, S114-, G124I, E125N, I126G, M141I, K143R, L147I, L151D, I153L, N160T, T161N, T164I, S181T, I197L, D202N, K204T, T208S, K212N, R224K, E247A, T255I, V264I, S278G, I281M, G286K, A288T, T292I, G293R, D294K, A308E, K315E, A318V, K319G, E323K, -328N, Q361K, -373S, -374G, N379-, -381N, -382E, Q414L, S418N, L425M, N432E, E436G, T437I; gp41: M7L, A96N, E110D, D113N, K122R, D129N, L130T, T133P, I135L, E136Q, N140I, K144N, Q147K, N166K, V194I, P213Q, R214E, D230G, S235R, R236P, C253F, R259H, A268T, S293I, N298S, V301I, V318I, V322L, A325I, F326I, L330G, H331N, L345V; nef: -10G, -11G, G12R, P14E, 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S62A"}}},{"name":"DQ837381","node_attrs":{"div":0.20063000000000003,"accession":"DQ837381","clade_membership":{"value":"B"},"country":{"value":"KR"},"date":{"value":2005.0},"Strain_name":{"value":"05CSR3"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C151A","A213G","G214A","T288C","-305T","G369C","G455A","C467T","G480A","C503T","C516A","G518T","A533G","T570C","A576G","G579A","C603A","A604G","G614T","A645G","A649C","A661G","A676C","G677A","G703C","A706G","A810G","A812G","T824C","G911A","C947A","G989A","C1118T","A1145G","T1148C","G1173A","T1174C","G1205A","C1230A","G1232A","A1241G","A1265C","A1307G","T1409C","T1421C","T1457C","G1486A","G1499A","C1501T","T1502G","T1517C","G1562A","A1607G","A1664G","T1676C","A1736G","A1743G","A1745G","C1751T","T1771C","G1883A","A1908G","G1912A","A1920G","C1985A","C1986T","C1987G","C2075A","G2117A","A2164G","C2596T","G2624A","A2677G","A2693G","G2704A","A2707C","A2818G","T2854A","A2888G","A2920G","T2922C","A2938G","C2941A","G2972A","A2977C","G2984A","G3019A","T3052C","C3055T","C3067T","A3071G","G3085A","G3094A","A3096T","A3164G","C3223T","A3249G","C3252T","C3294T","C3303T","A3304G","G3307A","A3316G","T3328C","C3415T","G3427A","G3439A","T3449G","A3454G","G3467A","T3469C","T3497A","C3542T","G3562A","A3571G","G3651A","T3668C","A3684G","G3695A","G3755A","C3756A","A3760G","G3814A","G3825C","C3843T","C3857T","A3934G","T3976C","A3982G","A4025G","T4039C","G4051A","C4159T","T4198C","G4263C","G4267A","C4321T","C4475A","A4525G","T4537C","C4543A","A4564G","A4577T","T4676C","T4679C","C4726T","A4751G","A4782G","C4820T","G4856A","A4860G","G4870A","C4871T","T4886A","A4888C","C4889A","T4912G","T4952G","G4982T","T5062C","A5085G","G5087A","C5091T","G5137A","A5159T","T5188G","A5213C","G5225A","T5251C","G5267A","C5281T","A5282T","T5293G","A5345G","T5354A","G5412T","C5425A","A5431G","G5437C","T5492C","A5495G","A5545C","G5599A","C5614T","A5619G","A5631G","A5659T","G5668A","T5670A","T5677A","A5685T","C5688T","T5707A","T5708G","C5713G","G5717A","C5727A","A5742G","A5781T","A5784G","G5794A","C5795A","-5800G","-5804A","-5805G","-5806A","-5807G","-5809G","-5810G","A5828T","C5862A","A5866G","A5869G","A5914C","C5916A","C5924T","T5953C","G5954A","A5955G","C6004T","G6037A","C6052T","G6088A","C6139T","T6160G","G6167A","T6170A","A6174T","-6180A","A6186C","T6187C","A6194G","T6196C","-6203G","-6204G","-6205A","-6207T","A6208G","A6209G","-6212A","-6214A","-6215A","-6216T","G6217A","A6219C","G6220A","C6238A","C6243A","A6265G","G6267T","C6278A","A6281G","T6295A","A6304C","A6320C","T6334G","T6337C","C6375A","G6392A","C6412A","G6425A","A6462C","G6463A","T6511C","A6535G","C6545T","G6547A","C6563T","G6577C","T6599A","C6618A","T6641C","C6642T","G6647A","G6714A","A6728G","A6730G","G6743A","T6745C","T6760C","T6769C","A6775G","G6776A","A6780G","A6781C","A6786C","A6788G","C6800A","A6820T","A6836-","A6837-","T6838-","T6856A","A6858C","A6859C","T6883A","A6900C","T6916C","A6947G","C6951A","A6957G","A6962G","T6967C","-6971A","-6972A","A6974G","-6975A","-6977C","-6978T","-6979A","T6988C","A6992T","-6998A","-6999G","-7000T","-7001T","-7002C","-7004A","-7005T","-7006A","C7008A","-7009T","C7018T","A7040G","G7089A","A7102C","A7151G","A7152G","A7155G","T7165A","C7170T","G7182C","A7239G","G7310A","G7311C","A7313C","A7315G","T7321G","G7333T","G7405A","G7426A","T7432C","G7513A","A7522G","A7533G","G7549A","G7594A","G7604T","G7614A","T7618C","A7620G","T7622A","C7623A","T7624C","A7627G","G7628A","A7629G","G7631C","G7658C","A7669G","T7682G","A7683T","C7690T","T7691G","C7701G","C7702G","C7706A","G7712A","G7773A","T7775C","C7801T","T7864C","A7912T","G7942C","G8010A","T8013C","G8018C","A8023G","C8031A","C8047T","A8069C","G8070T","A8143G","G8144A","A8152G","A8163G","C8167T","G8170A","A8216G","T8227A","T8265C","T8279G","T8280G","A8288C","T8290C","C8293T","G8323A","T8366A","A8367-","G8368-","T8369-","G8372-","T8375-","A8390G","A8403G","G8404A","C8406A","A8435G","A8458G","C8460T","A8469C","G8506T","T8507G","A8564G","T8595G","C8640T","T8646C","G8654A","A8657G","T8675C","C8676T","T8685C","A8701T","T8703C","G8717A","A8718G","A8719G","A8739G","C8775T","C8790A","C8809T","G8817A","A8827C","T8829A","T8832C","T8835C","G8846A","G8861A","T8864G","A8909G","G8924A","G8933C","G8945A","G8955A","A9005-","G9006-","G9007-","G9008-","A9009-","G9010-","G9011-","C9012-","T9014A","C9017T","T9019C","G9022A"],"INT":["S17T","A23V","I84V","G163A","L234I","D256E","I268F"],"RT-p51":["V8I","D177N","T200A","E204D","N265D","V276A","V293I","E297K","I326V","Q334L","M357V","K385R","T386I","T400I","T403M"],"RT-p66":["V8I","D177N","T200A","E204D","N265D","V276A","V293I","E297K","I326V","Q334L","M357V","K385R","T386I","T400I","T403M","S452A","V458I","S468T","H483Y","S519N","K530R","A534T","A554N"],"gp120":["T3K","T21N","D34S","N102K","D105N","-106N","-107V","N109D","N111T","K123I","N128K","S130Y","I137M","R138I","Q142K","K143E","K150N","I156L","N159S","N160L","T164A","T174K","V180I","A191T","K203T","E241D","F249I","T255N","S263L","E265K","R287K","T292A","D297N","A3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S17T, A23V, I84V, G163A, L234I, D256E, I268F; RT-p51: V8I, D177N, T200A, E204D, N265D, V276A, V293I, E297K, I326V, Q334L, M357V, K385R, T386I, T400I, T403M; RT-p66: V8I, D177N, T200A, E204D, N265D, V276A, V293I, E297K, I326V, Q334L, M357V, K385R, T386I, T400I, T403M, S452A, V458I, S468T, H483Y, S519N, K530R, A534T, A554N; gp120: T3K, T21N, D34S, N102K, D105N, -106N, -107V, N109D, N111T, K123I, N128K, S130Y, I137M, R138I, Q142K, K143E, K150N, I156L, N159S, N160L, T164A, T174K, V180I, A191T, K203T, E241D, F249I, T255N, S263L, E265K, R287K, T292A, D297N, A308K, K309S, N311T, N312D, Q316K, K319D, R322S, Q335P, N349T, S365G, T366N, N368S, -373N, -374D, -375L, T380N, -381S, -382S, D384I, T385N, I396V, R412K, R416S, L425I, N432K, N433D, E436T, T437G, T439I, G443A, K462R; gp41: G3T, I4L, K77R, A96T, A101S, S104N, K106R, S107N, D109S, E110Q, E119Q, Y127V, D129S, L130V, T133R, E137K, S157N, R236Q, L237S, D239H, A243E, S256L, A281I, N287S, N305D, V321A, F326G, I329L; nef: S9-, R21E, K39R, H40Y, I43L, C55L, L85V, Y102H, Y115H, Y120F, F121L, N126G, A156V, G159R, N162T, C163S, M168I, M173I, D174E, E197D, D205N; p17: E12Q, R30K, G49S, L61I, Y79H, T81A, V82I, Q90R, K91R, E93D, I104V, E105A, N109S, K114T, G123A, N124S; p24: L6I, I27V, V148T; p6: T22A, I31T; p7: R7K, T12M; pro: D29N, N37S, K41R, L63M, L93I; rev: E10D, E32Q, R53Q, G57A, I59V, S61R, P67S, Q74P, S99D, I102V, P107S, A108T; tat: K12N, Q17K, K19E, A21P, K40R, R78P; vif: K33R, T47I, I66V, R92G, S95N, N101T, Q109R, N122K, R132S, I159T, T167A, R184K; vpr: T19S, N28R, V37P, G41S, A55T, I60L, I63M; vpu: P3S, V21I, S24T, L27F, L34R, Q36E, R37K, D40E, E58D, A63K, M67R, H74L"}}}]}]},{"name":"B_NODE_0000029","node_attrs":{"div":0.14411000000000002,"clade_membership":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["G265A","C516T","G599A","G1271T","G1313A","A3264G","G4695A","T5062C","T6835A","C6935A","-6971A","-6973T","A6989-","-7000A","-7001A","-7002A","T7433C","G7658C","T8103C","C8277T","A8364-","T8666C","A8739G"],"RT-p51":["K390R"],"RT-p66":["K390R"],"gp120":["I317V","-370S"],"gp41":["E119Q","V267A"],"nef":["R178K"],"rev":["P31S"],"vif":["G37K","I159T"]},"labels":{"aa":"RT-p51: K390R; RT-p66: K390R; gp120: I317V, -370S; gp41: E119Q, V267A; nef: R178K; rev: P31S; vif: G37K, 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S17N, A23V, L28I, I72V, I101L, I113V, E152K, F181L, G190E, V201I, T206S, Q216H; RT-p51: D76N, V111I, I135T, F214L, V245E, P272A, T286A, V293I, E297K, M357I, A360T, A376T, E399K, T400I, T409N, V435E; RT-p66: D76N, V111I, I135T, F214L, V245E, P272A, T286A, V293I, E297K, M357I, A360T, A376T, E399K, T400I, T409N, V435E, D460S, A554T; gp120: T3S, E19D, T21K, A32G, D34E, V37M, V56I, N64D, N71D, H77Q, K93Q, N102D, T104I, -106Y, -107K, N109T, T112N, -119N, -120T, -121T, K123D, G124T, E125G, S136N, M141K, V153L, D157N, N158E, D159V, P192-; gp41: I4L, M7V, V24I, V28A, L54M, K77R, S88T, S107T, L108M, D109K, E110G, K122R, D129G, L130E, T133R, I135L, N160S, N166Q, I193L, H209R, P213Q, S235T, R236Q, V238A, D239T, I270T, R277G, A306V, A310T, V321A, V322I, A325V, I329F, H331N; nef: R8E, S9-, R21Q, E24G, P25I, N52T, D54S, C55L, Y81F, K82Q, A83G, L85W, Y102H, D108E, F139Y, E149D, E158A, R188S, H192R, D205N; p1: S8P, H9Y; p17: E12Q, K28R, R30K, L61I, G62A, K91R, E93K, D102E, A115V, Q127H; p2: T12N, M14L; p24: S41T, I91V, E180D, P207Q, A208G, T216S, V230I; p6: T23-, P25S, P30Q, L38S, S50L; p7: K41R; pro: K14R, N37D, K41R, I64V, V77I; rev: S31T, R53H, G57N, W58R, P72S, L73I, Q95R, T114A; tat: A21P, N24A, K29Y, S70P, T74A, P77H; vif: K22N, K36Q, K37R, V39I, D61E, T67I, T74A, K91E, N101H, Q105K, H127R, R132S, T151A, I154R, T159R, T167A, P177S, G185E, S186N, H187Q, N190S; vpr: A4I, Y15N, N28S, V37A, G41S, R85L, Q86R; vpu: L4E, V14L, A15V, S24T, I33T, L42I, E66G, -69V, -70E, -71M, -72G, D80A"}}}]},{"name":"B_NODE_0000031","node_attrs":{"div":0.14575000000000002,"clade_membership":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["G3364A","G3651A","G5187A","T5487C","-6205T","A6208C","A6986-","T6988-","A6990-","C7153T","T8290C","T8426G","G8875A","T8966C"],"RT-p66":["S519N"],"gp120":["E122-","D384E"],"gp41":["D109N","R236P"],"nef":["M182V"],"p24":["N120S"],"vpu":["L27F"]},"labels":{"aa":"RT-p66: S519N; gp120: E122-, D384E; gp41: D109N, R236P; nef: M182V; p24: N120S; vpu: 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V79I"}}},{"name":"KT427771","node_attrs":{"div":0.20963,"accession":"KT427771","clade_membership":{"value":"B"},"country":{"value":"BR"},"date":{"value":2010.0},"Strain_name":{"value":"10BR_RJ067"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C150T","A161C","A213T","G214A","A216G","A220G","C233T","A303T","A304-","A371C","T422C","T426C","C456T","T495C","A507C","G518A","C535G","A548G","G579A","A585G","C586T","A599G","A619G","A676G","G709A","C714A","A715C","G716A","G743A","C749T","A779G","T782A","A803G","T858C","G944A","G956T","G989A","A1002G","A1007G","A1025G","T1091C","A1142T","T1181C","C1211A","T1244C","C1245T","A1259G","T1280C","G1301A","G1394A","A1412G","A1415T","A1449G","A1450G","G1455C","A1458G","G1487A","A1543G","A1545C","C1658G","G1661A","T1676C","G1697A","A1701T","A1715G","A1736G","A1765G","A1781G","C1782T","G1794A","G1804A","C1826G","C1828T","A1839G","A1867G","A1918G","C1996A","A2002G","G2027A","C2044T","G2074A","T2080C","T2087C","A2119G","A2155G","T2199C","T2257C","T2269C","C2296T","C2356T","T2383C","C2386T","A2446G","T2449C","A2459G","T2476C","G2509A","A2524G","C2533T","A2579T","T2653C","G2681A","G2682A","C2684G","A2727G","A2743G","T2806C","A2839T","G2869A","A2881G","G3053A","A3097C","A3115G","T3165C","C3178T","A3224T","C3232T","G3264A","C3266T","A3280G","A3293T","C3294T","C3346T","A3400G","G3427A","G3431T","A3454G","T3497C","C3499T","T3505A","T3551C","G3562A","T3628C","A3631G","A3637G","A3676T","C3692T","C3712T","A3715G","G3737A","C3751T","C3773T","A3805G","A3824G","T3826C","A3839C","G3841A","A3868G","A3890T","C3892T","C3908G","A3961G","A4021G","G4051A","G4060A","A4063T","C4146A","G4150A","G4187A","A4243C","A4246G","G4268A","C4318T","A4319G","G4354A","G4464A","G4467A","T4537G","A4564G","T4585C","A4625G","G4631A","A4650C","A4652C","T4672A","A4677G","G4684A","T4691C","G4694A","A4711C","A4721T","A4725C","T4769A","G4778A","A4781G","A4819T","G4835T","A4858G","G4861A","C4890T","T4891C","T4912A","A4966G","T4967G","A4968G","G4975T","T4976A","A5021C","T5028C","C5034T","A5059G","A5061C","G5066A","G5093A","G5167A","G5179C","T5209C","A5213C","C5221T","T5224C","G5225A","A5233G","G5246A","A5248C","G5267A","A5278G","G5279A","A5336C","G5363A","A5432G","C5444A","C5445T","T5466C","G5482C","T5483G","T5492C","G5548T","T5576C","T5577A","T5578G","C5579A","A5607C","C5614T","C5620A","C5639G","A5640T","C5654G","G5668T","C5679T","A5680T","A5702G","A5703G","T5707A","T5708G","G5711A","G5717A","A5746G","G5747C","T5778C","-5800A","-5804A","-5805A","-5806A","-5807T","-5809G","-5810G","-5812C","-5817A","-5819T","C5827A","C5862A","A5863G","A5869T","A5896G","A5907G","A5911C","C5916A","A5947G","G6023C","C6052T","T6085G","C6115T","G6121A","A6131C","-6171G","-6172G","A6174G","-6175G","-6180A","A6182-","C6183-","T6184-","A6185-","A6186-","T6187-","-6203T","T6205G","A6206G","-6207A","-6211G","G6217-","G6218-","A6219-","G6220-","C6247T","G6280C","A6286T","A6371C","A6420T","A6456G","T6457A","T6460C","A6465G","G6466A","C6483T","T6487C","A6514G","A6532G","A6535G","A6574T","A6589G","T6637A","G6638A","A6640G","T6641G","A6649C","A6654C","A6659G","C6660T","A6684G","A6693C","G6712A","G6725A","T6745C","A6753G","C6758T","A6779G","A6781C","C6790G","A6797G","A6812G","-6830G","-6831G","-6832G","A6855C","T6888C","G6889A","A6935C","A6957G","-6968G","-6977A","-6978C","-6979T","-6980G","-6981A","-6983A","-6984A","-6985T","-6986A","-6988T","-6989A","-6990G","T6994A","A7000-","A7001-","A7002-","T7003-","C7008T","A7021C","A7027G","A7037G","A7057G","A7090T","A7095T","A7100C","T7106A","A7129G","T7147G","A7148T","A7149C","T7159A","C7164G","C7170T","G7232A","A7261G","A7300G","T7308G","A7322G","G7324A","G7450T","A7458G","T7462C","C7463A","G7513A","A7532G","A7533G","T7555G","A7627C","G7628A","A7666C","G7676A","G7688C","G7689A","C7690G","A7713T","A7714T","G7717A","G7720A","A7733C","A7744G","G7745A","A7750G","C7770A","A7771C","T7775C","T7783C","G7846A","T7867A","A7868T","T7888C","T7913C","C7931T","T7932C","A7953G","G7965A","A7977G","A7988C","T8008G","G8010C","G8050A","G8061T","C8065T","T8097C","T8112C","T8153C","G8158C","A8163G","C8218T","C8220T","G8255A","G8264C","G8274C","T8279G","C8286-","T8287-","A8288-","T8289-","C8290-","C8291-","T8292-","C8293-","C8294-","A8295-","C8296-","A8297-","T8298-","A8299-","C8300-","C8301-","T8302-","A8303-","A8305-","A8306-","G8307-","A8308-","A8309-","T8310-","A8311-","A8312-","A8316G","G8317A","G8319A","C8320A","T8322G","A8327-","G8328-","G8329-","G8330-","C8331-","T8332-","T8333-","T8334-","G8335-","C8336-","T8337-","A8338-","T8366A","-8371A","T8375-","G8377A","G8412C","A8420G","G8432A","C8440T","A8455C","C8460T","C8467T","A8469G","C8488A","C8495T","G8499C","G8506T","T8507G","G8517A","A8533G","C8552T","A8555G","A8580G","C8581A","T8595C","T8596G","A8597C","C8607T","A8608T","A8636T","A8655C","C8688A","C8720T","C8741A","G8753A","T8757C","A8797G","A8815G","C8828T","A8886C","T8887A","T8913C","C8957T","C8971T","C8992A","C9017A","T9019G","T9029A"],"INT":["S17G","M22L","S39C","L45V","E96D","T124N","E138K","K156N"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S17G, M22L, S39C, L45V, E96D, T124N, E138K, K156N, V165I, I182V, S230N, R231K, N254K, R284G, D286N; RT-p51: V35A, K122E, S162C, G196K, Q197E, K211R, E248D, D320N, M357T, T377L, R390K, T400L; RT-p66: V35A, K122E, S162C, G196K, Q197E, K211R, E248D, D320N, M357T, T377L, R390K, T400L, A446S, S468P, K527N, V548I; gp120: T3K, K5N, K18R, E19D, T21N, V57L, H77Q, K93Q, -106N, -107W, N109D, T112S, N113T, S115L, -116D, -117M, S136D, I137V, Q142H, E144D, I173L, Y189F, N201R, K204R, P210L, E240D, N261K, E262K, S263A, E265N, N267T, T269V, K277R, H280P, A291T, D294Q, Q300R, H302Y, K309D, N312K, K315E, V317I, K320E, -326G, N327K, -328N, N334T, M345T, N368Q, -372G, N379S, -381E, -382N, E384S, I395V, Q414L, R416Q, S418T, N432S, N433D, N434G, N435E, T437S, T439I, V460I; gp41: V2L, I4G, M7V, E49D, Q52R, L54M, K77G, I84M, E121D, D125N, D129Q, E137V, K144Q, E148K, A156D, F188L, T189S, L210S, D217G, G221E, E225G, S235R, C253F, L265S, I270T, Y284H, W285C, N287S, A306V, V318I, V321L, R324T, F326V, A328G, I329R, L330E, H331W, I332E; nef: -10K, -11E, G12-, R22Q, E24Q, A33V, E38A, H40Y, A42V, I43V, A49E, A53P, C55L, E59K, T80D, L85R, H89F, E98D, K105Q, H116N, F139L, K152R, E158G, V182Q, F191L; p1: H9Q; p17: E12D, S54P, R58Q, V82I, T84V, K95R, K114R, S125N, Q127T; p2: N9G, A11P, T12A; p24: E75D, I91V; p6: T8S, E29G, A39T, R42K, S50L; p7: K26R, N27H; pro: L10V, K14R, V77I; rev: E11D, F21Q, L22I, P28L, S31P, E47A, R53Q, S54A, A68T, L73F, I102A, V104L; tat: K19R, T23N, V36R, A58S, V67A, S68D, S75P, T82A, E86K; vif: K22H, M29K, I31V, H42P, E45D, I47L, D61E, D78V, Q83H, K91R, R92E, N101D, L102S, L109Q, H127R, I128V, S130I, T151A, K158R, T159P; vpr: E25D, V37P, G41S, E48N, A55T, A59T, Q77H; vpu: P3S, Q5K, A11G, A16G, V21F, I25L, K32R, L34R, R35K, R37K, R47A, V65M, -69H, -70E, -71M, -72G, H74N"}}}]},{"name":"B_NODE_0000033","node_attrs":{"div":0.14863,"clade_membership":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["G3814A","G4150A","G4174A","G5167A","C5356T","C5614T","A5622T","-5804A","-6175T","-6203A","-6214G","-6215A","A6335-","T6337-","-6995A","-6999G","G7628A","T7691A","C7939T","G8010C","G8170A","T8227C","G8267T","G8323A","A8367-","G8368-"],"gp120":["G124-","M141L"],"gp41":["L130I","I135L","R259H","V322L"],"rev":["A108T"],"tat":["P77L"],"vpr":["T84I"],"vpu":["P3S","Q5H"]},"labels":{"aa":"gp120: G124-, M141L; gp41: L130I, I135L, R259H, V322L; rev: A108T; tat: P77L; vpr: T84I; vpu: P3S, 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M22I, L45Q, I101L; RT-p51: V35M, T39A, R83K, K102Q, K103N, K104R, D123E, I135R, E169D, V292I, E344K, A355S, R356K, K366R, K388R, T403A; RT-p66: V35M, T39A, R83K, K102Q, K103N, K104R, D123E, I135R, E169D, V292I, E344K, A355S, R356K, K366R, K388R, T403A, S468T, S491P, L517I, Q524E, A554S; gp120: T3V, K5N, V57L, N64D, -107T, S115N, -116T, -117T, -118E, -119E, -120Q, -121L, -122T, -124E, E125Q, I126M, S136D, I137L, E144Q, F148L, D159G, N160T, T161-, V180I, K204N, P210Q, K212T, L237R, E240D, I244L, E247S, T250S, A253V, Q259H, S263T, V264I, E265Q, N272S, R287K, Y290F, Q300R, R307K, A308E, K309D, N311E, N312R, T313N, K315Q, Q316K, K319M, R322K, -328K, K329T, I331T, V332K, N334D, Q335K, S336H, S337A, S347T, Q361N, S365Y, W367-, N368F, -372A, -373W, -377S, -381N, -382S, N383T, T385K, P389Q, I395F, M406I, R412K, R416S, E436D, T439V, G443A, V468I; gp41: I4L, S23A, L54M, E110Q, D129G, T133N, E137K, K144Q, E148D, S157N, N166Q, L191F, I193L, P213Q, E220G, S251N, C253F, A268T, L273P, W286G, L288I, 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V65M"}}},{"name":"KF384808","node_attrs":{"div":0.21112999999999998,"accession":"KF384808","clade_membership":{"value":"B"},"country":{"value":"US"},"date":{"value":2011.0},"Strain_name":{"value":"ES22_27"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["C8-","T24A","G53-","C151T","C152A","G167A","C227A","A286G","-305T","G365C","G379A","A428G","A458G","G471C","T495G","A499G","A512G","G520A","C536T","C540A","T549A","A562G","A571T","T636C","A692G","C746T","C747A","C749G","G770A","A803T","C902T","A932G","G944A","C950T","C1013G","G1067A","G1078A","A1079C","C1137T","G1173T","T1174C","C1175T","G1192A","C1220T","C1230A","A1265C","T1271G","G1301A","A1313G","C1354G","A1370C","A1382T","G1443A","A1450C","G1474A","C1490T","A1497G","A1498G","C1501A","T1517C","A1529G","A1567G","T1613C","T1679C","A1712G","C1768A","T1771C","A1781T","C1825T","A1867G","G1912A","A1920G","T1975C","A1982G","C1985A","G2027A","T2035C","T2080G","A2203C","A2243G","T2257C","G2273A","A2290G","A2314G","G2359T","A2368G","C2386A","A2413G","A2459G","C2464T","T2476C","A2519G","G2600C","A2612C","C2615G","G2656A","A2680T","A2699G","A2727G","T2735C","A2752G","T2770C","T2806C","A2839G","T2885C","A2937G","G2972A","G3004T","C3055T","G3088A","G3098A","A3115G","T3118A","A3136G","T3165G","G3168A","G3171A","G3173A","A3238G","T3310C","A3347C","C3376T","G3379A","G3398A","G3427A","T3445C","A3447G","A3481G","C3500A","T3541C","T3551C","A3586T","T3613A","A3629C","A3631G","G3667A","C3691T","C3712T","C3773T","G3796A","A3808G","C3908T","C3962T","T3967C","A3985G","A3989G","C3994T","C4015T","A4066G","C4078A","A4145G","C4159A","T4276G","G4279A","A4356G","G4376A","A4391T","A4407G","A4431G","T4444C","G4464A","A4531G","G4573A","A4577C","G4583C","A4658G","A4677G","T4679G","A4686G","A4687G","A4692C","A4695G","T4703A","C4726G","T4727G","C4728A","T4742C","T4769C","A4774G","A4845G","G4856A","A4858G","G4861A","G4887A","T4910C","T4914C","A4966G","A4988T","T5018C","C5062G","T5073C","G5137A","A5213G","C5214T","T5237C","A5238T","T5263A","A5278G","A5290G","G5363A","G5370T","A5397C","G5433A","A5462G","A5491T","C5513T","G5532A","A5566G","T5576A","T5577C","A5594G","G5599A","A5607C","C5654G","A5659C","C5688T","A5703G","G5717A","C5727A","G5741A","G5747T","A5760G","T5788C","-5800G","-5805G","-5807G","A5828T","G5853A","A5866G","A5867-","A5868-","A5869-","A5881G","A5896T","G5902A","A5907G","C5916A","C5924T","G5939A","G5962A","A5965G","C6004T","A6016G","G6023A","A6030G","T6100C","A6130G","A6158C","T6160G","C6163T","C6165A","T6169G","T6170G","-6171C","-6172A","-6180T","T6181C","A6188G","C6190A","T6193A","A6194C","C6198A","T6199C","A6200G","T6202C","A6203C","-6204C","-6207A","A6209T","-6211A","-6213A","-6216A","G6217T","G6218A","A6219T","G6220T","A6222G","A6223T","G6225C","A6230G","T6250C","C6255G","C6262A","T6271A","A6275G","A6281G","A6282G","G6284A","A6286C","A6302C","A6303T","C6305G","T6306A","G6311A","A6316G","A6320G","G6323A","-6335A","-6337C","G6339A","G6345T","G6346A","T6351G","G6368A","C6382T","C6412T","T6454C","A6456G","T6457A","A6461C","G6463C","A6465T","A6476T","C6482A","A6488G","A6490C","T6493G","T6523C","C6545T","A6565G","G6577A","A6594C","A6616G","G6626A","A6648T","A6664G","C6667A","A6668G","A6682G","A6686G","T6735A","T6772C","G6776A","A6779C","C6790A","A6797T","A6799T","A6801T","A6809C","A6822G","C6824A","A6835T","A6840G","C6850T","C6874T","T6895C","T6904C","G6905A","A6932T","-6968T","-6969G","-6970G","-6972A","-6975A","-6977A","-6978A","-6979C","-6980A","-6982T","-6983A","-6984T","-6985T","-6986T","A6987G","-6988G","A6992G","-6996C","-6998C","G6999A","-7009T","C7018T","C7094G","T7106G","T7114C","A7120T","G7123A","A7154G","A7155G","C7156G","A7158G","C7164G","T7228C","G7244A","A7322G","G7375A","C7397A","A7399G","T7403C","G7450T","T7516C","G7549A","C7574A","T7579C","G7604A","C7625T","A7629C","G7633T","C7645T","A7669T","C7678A","G7689A","A7693T","A7700T","A7713C","G7720A","A7722C","A7729G","A7734T","A7800G","G7807A","T7884C","T7913A","A7915G","G7918A","T7921C","T7932G","C7938G","T7939A","A7953T","A7963C","A7988C","G7989A","G7997A","T8008A","G8017A","C8051T","C8103T","A8163G","A8170C","C8189T","G8194A","C8215T","A8222G","A8228G","G8245A","A8258G","T8265G","T8280G","T8281C","C8291T","C8294A","T8321G","T8322C","G8330C","C8331T","G8349A","G8350A","-8364A","G8365A","-8367T","-8368T","G8372-","-8373T","-8374T","G8385A","C8386G","T8387A","G8402A","C8406A","G8426A","C8440T","T8477A","G8479A","A8489G","A8494C","A8525G","G8528A","G8537A","C8552T","T8595C","C8601A","G8624T","C8666G","G8682A","T8711C","A8754T","C8755G","G8774A","G8784T","T8786A","G8789C","A8801G","C8809T","A8812C","T8832C","G8846A","G8848A","A8875G","G8888A","A8893G","G8894A","A8912C","T8915C","G8922A","C8934A","T8935A","C8948T","C8960A","G8962A","C8964G","C8966-","C8967-","G8968-","A8969-","G8970-","C8971-","T8972-","T8973-","T8974-","C8975-","T8976-","A8977-","C8978-","A8979-","A8980-","G8981-","G8982-","G8983-","A8984-","C8985-","T8986-","T8987-","T8988-","C8989-","C8990-","G8991-","C8992-","T8993-","G8994-","G89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I72V, T124A, D167E, Y194C, V201I, T206S, K211R, K219R, S230N, I268L, D270H; RT-p51: E36D, I50V, V60I, W88C, K122E, I142V, E169Q, K173Q, Q174E, I202V, K211R, K281R, V293I, G335S, M357R, R358K, G359D, A360T, N418H, V435I; RT-p66: E36D, I50V, V60I, W88C, K122E, I142V, E169Q, K173Q, Q174E, I202V, K211R, K281R, V293I, G335S, M357R, R358K, G359D, A360T, N418H, V435I, K451R, L469I, K512Q; gp120: T3A, K5-, K18R, T21N, D29N, V57I, E59G, N102Q, T104N, D105E, -107K, N109I, T110S, N111A, T112-, N113-, S114-, S115-, K123-, I126V, T134S, S136G, D139E, L141V, K143G, E144N, K150L, L151D, V153I, I156V, D157P, S162N, R164I, I166R, V172I, N201R, K203H, K204M, T208S, P210T, K212D, N213K, E247A, V258I, E265V, N272G, S278G, D294K, A308T, K309Q, N312K, K315Y, Q316M, K319Q, E323G, Q324K, -328N, K329R, G351R, T360S, Q361K, -372W, -373N, -374N, -375N, -376S, -377I, N378W, T380A, -381T, -382Q, Q414E, S418A, N434G, N435S, T437S, E464K; gp41: M7V, V24I, Q32K, E49D, L91I, A101T, N109T, E110D, K122N, D125E, T133S, E137T, N140T, K144M, N166S, V194A, L204M, H210R, A212G, D217V, E220D, R229Q, D232N, S235R, R250W, A267V, A281V, N287S, T307A, I309V, I319V, V321G, F326C, L330F, H331N, L340A, A343L; nef: G3N, R8N, -10F, A15R, M20I, D28E, A33V, S45R, S46N, N51T, L87I, K94N, D108E, V114I, T138C, V148L, A156V, N157T, M168I, S169N, K178R, V182I, K184R, V194M, L198K, C206*; p17: R15K, V46L, S54A, E55G, G62E, Q69K, S72T, K76R, Y79F; p2: V7I, N9T; p24: L6M, G116D, V148S, R154K, A208G, E213D; p6: P30Q, I31T, E34D, P49L; p7: R3K, K11G, T12N, K34R; pro: K41R, I62V, L63T, V77I; rev: G6E, F21T, S30R, S31T, E47A, R50K, S54T, G57R, A68V, T108P, T114I, E116K; tat: R7S, K29R, T39L, S46F, T64A, V67D, S68Y, T75A, L77D, T82S, K85T; vif: R19K, I31V, K33R, K34G, K36Q, K37G, V39L, T47R, H48N, K63R, I87V, K91R, R92K, Y110H, H127R, E134D, T151A, K159R, R184K; vpr: Y45L, Q86R, A89S; vpu: A16G, R37K, D40E, R45K, R47I, M67R, 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L82Q"}}},{"name":"AY561238","node_attrs":{"div":0.20234000000000002,"accession":"AY561238","clade_membership":{"value":"B"},"country":{"value":"CO"},"date":{"value":2001.0},"Strain_name":{"value":"PCM034"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["A353G","A368T","A386G","A388G","A414G","A424G","C467T","A491G","T516C","G520A","T567A","A576T","C577T","A585T","C586G","A604G","A645G","G677A","G687A","C710T","A711G","C746T","C749T","G752A","A803G","G911A","A986G","T1003C","A1025G","A1073G","C1098G","A1208G","C1245T","G1328A","A1349G","A1400G","T1444C","A1475G","T1511C","C1541A","A1560C","C1615G","A1664G","T1679C","T1682C","A1691G","A1714C","G1726A","G1804A","A1852G","A1920G","C1986T","C1987T","C1996T","G2027A","T2071C","T2092C","G2230A","G2246A","A2260G","G2273A","A2293G","G2392A","G2428A","G2470A","G2518A","C2533T","A2545G","C2584T","C2714G","C2777T","T2779G","T2829A","G2878A","G2887A","C2908T","C2941T","T3045C","G3046A","T3059A","G3091A","A3154G","A3164G","G3166A","A3238G","G3264A","A3293T","A3316G","C3376T","C3394A","A3400G","A3406G","G3431T","G3442A","T3497C","C3504A","G3529A","C3542T","A3651G","T3668C","A3703C","A3787G","A3808G","C3823T","G3866A","A3964G","G3983A","A3985G","G4060A","A4076C","T4079C","T4085C","A4107G","A4112G","C4138T","C4149T","T4153G","G4176A","C4210T","A4333G","G4335A","A4338G","T4412C","C4475G","C4501T","T4534A","T4606C","G4636A","A4652C","G4673A","T4674C","G4684A","G4694C","G4696A","C4728A","C4771A","A4782G","A4817G","T4826C","G4835C","G4856A","A4860G","G4864A","A4888G","T4910C","T4952A","C4965T","T4969G","A4988T","A5090G","A5122G","G5123A","A5134G","A5155G","G5176A","T5197C","G5212T","A5230G","G5256A","G5267A","A5277G","A5282T","T5292C","A5335G","T5354C","A5375G","A5431C","G5437C","C5478T","C5495A","A5496C","A5574G","A5637G","C5654T","G5718A","A5720G","A5751G","G5775A","A5784G","A5787T","T5788-","T5789-","A5790-","T5791-","C5792-","A5793-","G5794-","C5795-","A5796-","T5798A","T5799G","-5800G","T5801A","-5805A","-5806C","G5808A","-5809C","-5810T","-5812G","-5813T","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820A","-5821G","-5822G","-5823G","A5828T","G5837A","G5838A","A5866C","T5887C","T5899G","C5916A","G5954A","A5955G","T5964A","C5980T","C5989T","C6052T","T6134C","-6171A","-6172G","-6180C","G6201A","-6204A","A6206G","-6207C","T6210C","-6211T","-6213T","A6219G","A6226C","A6248T","A6263C","T6276C","G6277A","C6278A","T6287A","A6304C","G6311A","T6315A","A6330T","T6334-","C6336-","A6338-","G6339-","A6388C","T6395A","T6418C","T6457C","G6458A","T6460C","A6464G","A6484G","A6489C","C6559T","A6574C","G6575A","G6577C","G6578C","T6613A","A6628G","A6640C","A6679G","A6810C","A6818G","C6824A","A6825T","T6849C","A6855C","A6859C","A6913G","A6935C","C6938T","A6956T","A6960G","A6965-","C6966-","T6967-","A6971G","-6972G","-6975C","-6977C","-6978A","-6979G","-6980T","-6981G","-6982G","A6992-","C6993-","T6994-","-6996A","-7004A","-7005G","-7006C","-7009A","A7010C","A7037T","A7040G","A7090C","T7105C","A7151G","A7152G","A7155C","A7158C","G7162T","A7163G","C7164A","G7281A","A7313C","A7322T","G7331A","G7441A","G7450T","C7489T","A7504G","G7517A","T7555A","T7561A","G7568A","C7590A","G7604A","G7660T","A7668G","G7670C","A7711G","G7726A","G7759A","T7789C","G7790A","A7791G","C7792T","A7820C","A7847G","G7862A","T7879C","T7913A","T7921G","T7932G","T7968C","A7988C","C8005A","G8018A","A8019C","C8026A","C8031A","T8035C","G8050A","C8065T","C8071T","A8076G","G8079A","G8126A","A8128G","C8129A","G8130C","G8144C","G8204A","T8206C","C8213T","C8227A","G8243A","G8244A","G8253A","G8254A","G8264A","A8269G","T8279G","A8288T","G8317A","A8323C","G8330A","C8331G","G8345A","G8354A","T8366-","T8369-","-8370T","-8371T","-8373A","-8374G","G8376A","G8392A","G8402A","G8409A","G8426T","G8427A","G8428A","G8432A","A8441T","A8457G","A8461G","A8469T","C8471A","G8476C","G8490C","C8491A","C8495T","T8501A","A8503C","C8514G","G8534A","G8537A","G8540A","G8554C","A8555G","T8595G","C8640A","A8642G","A8643G","T8645A","A8647G","C8648G","C8651T","A8657G","G8659A","T8675C","G8682A","G8784C","G8789T","G8795C","A8796C","T8813C","T8829A","G8846A","A8847T","G8856A","G8861A","G8880A","T8881C","G8882A","T8914G","C8921T","C8928A","G8929A","A8932T","C8948T","C8967T","G8970A","G8981A","C8992T","G8994A","G8995A","G9010A","C9012T","T9029C","G9032A","G9040A","T9074C","G9085A","G9116A"],"INT":["V31I","G70R","I101L","K111R","I113V","T125V","G134E","R187K","K188R","L234V","D253E"],"RT-p51":["G51R","V60I","Q207E","V245E","V317A","S322T","T357A","R390K","T400S"],"RT-p66":["G51R","V60I","Q207E","V245E","V317A","S322T","T357A","R390K","T400S","A446S","S468P","T470N","H483Y","N519S"],"gp120":["E4D","T21N","D34S","V37K","-106Y","-107H","K123-","N132Y","I137L","L141T","Q142K","Y145N","K150N","V153I","V154E","D159I","T161-","S162-","S181T","D202N","K204E","K212T","E240D","E241N","V242L","E262D","D294S","V317I","K319T","R322G","Q324I","V332A","N334T","N368W","-372L","-373P","-374E","-375N","-376V","N378-","N379-","T380-","N383-","E384-","T385-"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R106K, V114I, V148L, E149D, E151D, K152Q, C163S, M168I, S169C, G172R, M173I, V180T, F191C, R196K, E197V; p17: K18R, K27E, G62E, L78I, T81L, T84C, Q90R, I104V, A118T, N124K, S126G; p2: V7A; p24: I91T, P123A, E180D; p6: E12A, R16K, R42K; p7: T50S; pro: K41R, V77I; rev: K20R, E47A, R53K, G57D, L60I, S61R, Y63H, A68T, L73F, G93E, T94D, S99T; tat: K19Q, A21P, T39I, T40N, S75A, S87P; vif: V7A, R17K, K22N, M29I, Y30H, K36N, H48N, A62D, I66V, Q83H, R92G, R93K, N101G, N122K, H127Y, I128R, E134D, T151A, K179R, H183R, N190S; vpr: D7N, R36S, V37T, G51E, A55T, E58G, I60L, I63T, Q77R, I84Q, R85I; vpu: A16V, K38R, E60D, L61Q, S62E, A63E, V65L, E66-, M67-, G68-, -69V, -70E, -71I, -72G, H74L, 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E13D, A23T, S57N, I60V, L74I, V110K, T112I, S119P, T122I, S195T, V201I, S283G; RT-p51: V21I, V35M, T39A, E40D, R83K, I135R, S162C, D177E, I178M, Q207E, R211A, S251H, V292I, E297K, V317A, I329L, G333E, Q334H, M357I, V365I, K390R; RT-p66: V21I, V35M, T39A, E40D, R83K, I135R, S162C, D177E, I178M, Q207E, R211A, S251H, V292I, E297K, V317A, I329L, G333E, Q334H, M357I, V365I, K390R, D460N, S468T, L469I, L491S, V496I, L517I, A554S; gp120: K18R, D34K, T35P, V37I, P57H, K69D, V106Y, -107P, -109D, T112S, N113T, S115N, -116S, G117S, -118N, -120I, -121L, G124E, T134S, T135G, Q142K, K143T, L147A, V153L, N160S, T161S, L165I, K204E, E240K, V243I, E247K, T250S, N251D, A253S, T255I, Q259H, V264I, Q265T, N272G, G293D, T294I, A308T, K309E, N312K, K315Q, Q316K, A318V, S319D, R322G, E323K, Q324K, F325L, -326I, -328K, T330K, V332I, M345K, G351E, N358D, T360S, Q361K, -368I, -372G, -373N, -377T, N379D, -383S, K393R, I396V, M398R, R412S, Q414Y, L424I, N433D, N434E, E436T, I463L, V468I; gp41: I4L, R46Q, K106R, L108Y, D109N, E110D, E119Q, K122R, Q147K, V190A, V194M, F206L, P213A, E220A, R229Q, R236Q, I245F, L249I, S256L, V267A, A268T, I270S, R276H, S293I, N298K, A306T, A310V, V318I, V322A, H331N, R334V, A343L; nef: G3S, W5L, S9R, -10T, -11P, P14S, A15V, V16I, D28A, S45T, L85V, D108E, Q125H, K152E, N162I, C163S, R178K, E182Q, L198K, Y202F; p17: V7I, S9T, R30Q, V82I, I92L; p2: V7A, N9A, T12S; p24: V27I, I91V, T110N, T148I; p6: S3N, T8S, T22A, T23P, S25P, P30Q, L35T, Y36H, L38M, A39T, R42K; p7: K41R; pro: L19I, K20R, M36L, N37D, L63P; rev: S8G, K14N, I21T, T31S, E47A, R53H, H63L, S67H, A68T, Q74P, S86N, D88E, I102V, E111D, *117E; tat: K19R, N24K, K40Q, Q54R, D61H, S62C, H65N, V67D, S68P, S70P, P77Q, K85Q; vif: K22N, K33R, A35T, K36S, R50K, H73Q, D78E, Q83H, V85A, K91R, V98I, V129G, S130T, P131S, A151T, T155K, K160R, A167K, Q178R, R184K; vpr: D7N, N28Q, A37S, Q77R, I84T, R85P; vpu: Q5V, L7A, V14L, S24T, I46L, R47I, E60D, L61Q, S62E, V65A, -69Y, H73-, 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E11D, A91T, S195T, S230N; RT-p51: K20R, K82R, K102Q, K122E, S162A, K173R, Q207R, R211S, E248D, P272S, K277R, A288S, Q334H, M357I, A376S, K385R, T386I, E399D, V435E; RT-p66: K20R, K82R, K102Q, K122E, S162A, K173R, Q207R, R211S, E248D, P272S, K277R, A288S, Q334H, M357I, A376S, K385R, T386I, E399D, V435E, E449D, R461K, L469I, H483L, S519N; gp120: S1N, E4D, K18R, T21N, V57K, M67A, K93R, V106L, -107N, N108A, -109T, T110-, N111-, T112-, N113-, S114-, -116I, -118S, -119N, -120M, -121T, E122L, S130T, I137K, R138N, M141K, Q142T, K143T, Y145R, L147Y, Y149N, K150R, I156M, N158D, D159N, N160S, Q175H, T208K, P210L, T250S, N261K, N267I, T269V, K277Q, S278G, I281M, A288T, E294G, H302Y, K309E, N311T, K315G, S319G, Q324R, N327-, V332I, Q335H, M345T, T360S, -370S, -372I, N378-, -381S, -382E, -383N, T387I, M398L, K404R, Q414N, R416S, S418T, L424V, S433G, E436D, S453N; gp41: K77R, T101I, L108Y, E110Q, E119Q, L130I, T133S, N140I, E143D, Q147K, E148D, N160T, I193L, P213Q, G235R, P236E, V238A, D239S, A243T, I245S, A281I, K297R, L304F, V318I, V321A, V322I, F326V, L340T; nef: -10L, H40Y, T48-, A49-, A53P, A56T, E62Q, I101V, Y102H, V114I, V133I, Y135F, E151D, H166S, D174E, E177D, R178K, K184R, Y203F; p17: V7I, E12Q, K28Q, R30K, K95R, A118T; p24: A14P, V27I, H87A, I91P, N120H, E128D, L136M; p6: T21M, T23I, S25P, L35-, A39T; p7: R3K, N8T, T12I; pro: L19I, E35D, N37D, L63C; rev: T15A, F21L, L22I, S25T, S54R, G57Q, S61D, H63Q, S86D, E87K, V97L, S99N; tat: R7K, K19R, T24A, V36K, A58T, D61S, K63E, V67A, S68H, K71D, P77H; vif: T20A, I31N, A35T, K36Q, G37R, E45D, T47P, R50K, Q105R, I120V, N122K, R132I, N140S, K141Q, I159K, K179R; vpr: T19A, V37I, R85Q, Q86R; vpu: P3S, L12I, V21I, K38R, D44E, E58D, E60D, L61H, S62E, A63E, V65A, E66T, M67L, G68-, -69V, H74D"}}},{"name":"KT124812","node_attrs":{"div":0.19226000000000001,"accession":"KT124812","clade_membership":{"value":"B"},"country":{"value":"DE"},"date":{"value":2004.0},"Strain_name":{"value":"963987"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["A374G","A423C","A424G","A440C","T486A","C516A","C531T","T571A","G608A","C641A","G644A","G709A","C746T","C830T","T861G","T884C","C902T","G944T","C1040T","A1074G","A1079T","A1090G","C1137T","G1160A","C1229T","G1271T","A1307G","A1359T","C1362T","T1444C","A1449C","T1452A","G1455-","C1456-","T1457-","C1460A","A1461G","T1484C","A1500G","A1567G","G1568A","T1613C","G1687A","C1692A","A1715G","G1739A","A1743G","A1772G","G1773A","A1776G","G1784A","G1804A","A1835G","A1852G","T1895A","C2070T","A2161G","C2386A","T2449A","T2542C","A2616G","A2617G","T2631A","G2656A","G2682A","G2710A","A2726G","A2752G","T2905C","A2968G","G2969A","A2985C","C3023T","A3027G","T3049C","A3080C","A3164T","T3165C","C3175T","C3322T","T3331C","T3412C","G3439A","A3463G","T3497C","A3503C","C3542T","T3567C","A3576G","C3577T","C3649T","C3692T","A3703C","A3706G","A3715G","A3733T","G3770A","G3866A","A3913G","T3924C","C3962T","A3964G","A3989G","A4069C","A4145G","T4153C","G4177A","G4267A","T4276C","C4321T","G4353A","A4372G","A4384G","A4397C","G4459A","G4495A","G4637A","C4665T","A4683G","A4693G","T4701G","G4708A","C4728A","A4733T","T4827C","A4857G","T4910C","T4959G","C4965A","C5019T","A5046C","T5047G","G5099A","A5119G","A5186C","A5213G","A5290G","C5294T","A5345G","A5360-","C5361-","A5362-","C5398A","G5412C","T5430C","C5444A","T5448C","A5493G","T5515C","C5567A","T5584C","A5612C","C5620T","A5622T","A5625G","G5629T","A5632G","T5677A","T5731A","G5747T","A5787G","A5804G","-5812C","-5813A","-5814C","-5815G","-5816A","-5817G","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","T5826C","G5864A","A5869T","T5929C","A5965G","G6079A","G6088T","G6167A","-6170G","-6172T","-6175G","A6177C","-6180G","C6183A","A6185G","A6186G","A6188C","C6189T","G6195A","-6203T","-6205G","-6206G","-6207G","-6210G","-6215A","G6220A","-6221G","-6222A","-6223A","A6226G","A6235G","C6247T","T6252C","G6261A","A6263G","T6271C","A6273G","G6284C","T6295A","C6318A","A6319G","T6331C","T6334C","A6335G","A6338G","G6339A","T6340A","T6351C","G6392A","G6403A","G6425A","C6446A","G6451A","A6490T","A6529G","C6545T","C6563T","G6578A","C6601A","C6647G","T6655C","A6682C","A6693C","-6703A","A6713G","T6724C","A6767C","A6781G","A6785G","T6787G","C6790A","G6806A","T6807G","A6811T","T6863A","A6877C","T6916C","C6919T","A6937C","-6956T","-6957C","T6961A","G6963A","A6965G","C6966A","-6977A","-6978A","-6979T","-6981T","T6988C","-6997T","C7008T","-7009T","C7012A","A7108C","C7124T","A7161G","A7163T","C7170T","T7217C","A7297G","T7321G","T7403C","C7463A","C7474T","A7570G","A7573G","A7604G","C7625A","T7630A","G7633C","G7640A","C7690G","T7691G","C7701G","C7702A","A7706C","A7711G","G7712A","G7720A","C7770A","A7771C","A7782G","G7790A","A7791G","G7807A","A7818G","C7869G","G7883A","G7885A","C7906T","T7913A","T7921G","T7932A","C7938G","C7940A","A7963C","G7987C","G7991A","C7999T","A8000G","A8010C","T8145C","T8218C","G8242A","G8255T","G8264A","G8267T","C8277T","C8286G","C8293T","G8304C","G8342A","G8350C","-8370G","G8388A","A8408G","G8409A","G8412A","A8413G","C8415G","G8429A","C8440T","A8458G","A8469G","T8483C","A8494C","C8495T","T8501C","C8514G","A8530G","G8534T","T8568C","T8594G","C8640A","A8642G","A8739G","T8747C","T8759C","G8795A","G8799A","A8812C","G8814A","G8818C","A8827C","C8828A","T8843C","G8858A","G8870A","A8874G","G8886C","T8887A","C8903T","G8905A","A8917G","G8955A"],"INT":["V31I","M50T","I72V","T124A","G193E","I203M","I208L","D288N"],"RT-p51":["Q174R","V179D","G196E","R211G","V292I","E297A","K311R","I329L","M357S"],"RT-p66":["Q174R","V179D","G196E","R211G","V292I","E297A","K311R","I329L","M357S","S468P","T470P","H483Y","L491S","N494S","E546D","V559I"],"gp120":["E4K","E78D","D105N","-107K","N108T","-116W","-118R","-119M","K123E","I133T","S136D","I137V","R138K","K140R","E144Q","P155Q","N158S","D159S","N160T","T161N","S162N","I166T","V180I","A191T","L198I","K212T","V242I","Q265E","R276S","H280P","R287G","E294S","I305L","N311E","N312K","K315E","V318S","S337T","A361N","-368S","-370D","-372N","-373V","-374T","-375N","-376K","-377T","N378D","T380-","T385I","E436G","T437S","T439I"],"gp41":["V24M","L54M","T101A","L108M","E110D","D113N","L130V","T133R","I135L","E137K","A156D","N160S","D163S","K172R","T189S","V194I","L204I","F206L","L210H","A212G","P213T","E220D","E228D","D230N","R233G","G235S","V318F","V321I","V322L","T325I","F326C","A328G","R334T"],"nef":["G3A","-10V","V16I","A23T","E24R","P25A","A33V","K39R","I43V","N51T","L58V","E63K","E64G","L100M","V153I","N157T","E158K","G159A","N162T","R178G","V182Q","R188H","H192R","D205N"],"p17":["L51I","L61M","P66S","F79Y","D102E","S125N"],"p2":["V7A","N9H","S10T","A11-","I13V"],"p24":["A14S","S44A","E71D","I115V","N120S","E180D","T210S"],"p6":["S3N","P5T","T22A","D32N","K33E","R42K"],"p7":["T12A","R26K","K34R"],"pro":["I13V","L33I","L63P","T91I"],"rev":["L18I","S30R","T31N","E47Q","R48K","Q51W","S86N"],"tat":["L8I","K12N","T23N","Y47H","T64N","S70P","S75T","P77E","K85T"],"vif":["H27Y","K33G","K36R","F39V","R41K","H48N","K91E","L125V","H127N","I154R","Q178R"],"vpr":["N28H","Q86-"],"vpu":["Q2P","Q5Y","I6M","A8S","I9V","S24T","L42I","R47I","E66G","-69H"]},"labels":{"aa":"INT: V31I, M50T, I72V, T124A, G193E, I203M, I208L, D288N; RT-p51: Q174R, V179D, G196E, R211G, V292I, E297A, K311R, I329L, M357S; RT-p66: Q174R, V179D, G196E, R211G, V292I, E297A, K311R, I329L, M357S, S468P, T470P, H483Y, L491S, N494S, E546D, V559I; gp120: E4K, E78D, D105N, -107K, N108T, -116W, -118R, -119M, K123E, I133T, S136D, I137V, R138K, K140R, E144Q, P155Q, N158S, D159S, N160T, T161N, S162N, I166T, V180I, A191T, L198I, K212T, V242I, Q265E, R276S, H280P, R287G, E294S, I305L, N311E, N312K, K315E, V318S, S337T, A361N, -368S, -370D, -372N, -373V, -374T, -375N, -376K, -377T, N378D, T380-, T385I, E436G, T437S, T439I; gp41: V24M, L54M, T101A, L108M, E110D, D113N, L130V, T133R, I135L, E137K, A156D, N160S, D163S, K172R, T189S, V194I, L204I, F206L, L210H, A212G, P213T, E220D, E228D, D230N, R233G, G235S, V318F, V321I, V322L, T325I, F326C, A328G, R334T; nef: G3A, -10V, V16I, A23T, E24R, P25A, A33V, K39R, I43V, N51T, L58V, E63K, E64G, L100M, V153I, N157T, E158K, G159A, N162T, R178G, V182Q, R188H, H192R, D205N; p17: L51I, L61M, P66S, F79Y, D102E, S125N; p2: V7A, N9H, S10T, A11-, I13V; p24: A14S, S44A, E71D, I115V, N120S, E180D, T210S; p6: S3N, P5T, T22A, D32N, K33E, R42K; p7: T12A, R26K, K34R; pro: I13V, L33I, L63P, T91I; rev: L18I, S30R, T31N, E47Q, R48K, Q51W, S86N; tat: L8I, K12N, T23N, Y47H, T64N, S70P, S75T, P77E, K85T; vif: H27Y, K33G, K36R, F39V, R41K, H48N, K91E, L125V, H127N, I154R, Q178R; vpr: N28H, Q86-; vpu: Q2P, Q5Y, I6M, A8S, I9V, S24T, L42I, R47I, E66G, 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L45Q, P90S, I101L, K219N, N222K, S230N; RT-p51: E29K, E36K, S48T, D121H, K122E, E123D, Q174E, Y188H, T215Y, Q334H, G335D, R356K, M357V, T377L, T400A, E404D, V435A; RT-p66: E29K, E36K, S48T, D121H, K122E, E123D, Q174E, Y188H, T215Y, Q334H, G335D, R356K, M357V, T377L, T400A, E404D, V435A, D460N, R461K, V467I, E516D, V548I; gp120: K5N, T21N, T35K, E59K, -107T, N108S, S115N, G117S, -118S, -119E, -120I, -121E, E122M, I137L, H145Q, L151Y, V154I, D159N, N160G, I166L, V180I, D202N, K204T, P210L, K212T, I244L, K254D, T255I, N267D, T269I, H280N, I281M, K315V, K319E, E323L, -326P, V332A, Q335H, S347I, -368T, N369G, -381T, D384G, T385Y, N433S, E436T, T437N, T439V, G443I, D446N, K472T; gp41: A96T, L108V, E110Y, D113N, E119Q, D125E, D129G, E137D, Q147L, E151Q, S157N, N166Q, A212T, G235R, R236P, V238A, N239H, F241L, A243T, V267A, V281L, W285C, N287S, A310V, V321M, A325I, L330I, R334T; nef: -10V, -11V, P14S, V16I, A33V, A49P, W57M, L87I, D108E, V114I, Y120F, T133V, E151D, N157T, S163C, M168L, S169N, E201D; p1: H9S; p17: E12A, R58K, L61I, G62R, V82I, V94I, S111C; p2: V7I, T8A, N9T, A11P, T12A; p24: L6M, E28K, V36I, E79D, L83V, A208G; p6: T8S, I31P; p7: R7K, T12V, N27H; pro: I64V, E65D, V77I; rev: F21R, S30N, R53Q, E57T, L60I, S61D, S99T, V104L; tat: T23N, T24Q, K29R, I39T, T40K, V67A; vif: K33G, K36R, G37K, I51T, K63E, I66V, H73N, R92N, S95R, N101D, N122Q, I124L, H127R, R132S, Q136H, N140S, T155K; vpr: I37M; vpu: Q2Y, D40N, R41K, R47I, E58D, M67R"}}},{"name":"JF320263","node_attrs":{"div":0.19997,"accession":"JF320263","clade_membership":{"value":"B"},"country":{"value":"US"},"date":{"value":2006.0},"Strain_name":{"value":"502_0839_wg01"},"LANL_subtype":{"value":"B"}},"branch_attrs":{"mutations":{"nuc":["A374G","G407A","A418G","T422C","A425G","C456T","T473C","A533G","A571T","C590A","A607G","G641T","G667T","A676G","C679T","G712A","C714A","A715G","G716C","C749A","A774C","C827T","C893T","C902T","A1089C","A1142G","T1143C","G1160A","G1271A","C1316T","C1459A","G1499A","G1567A","G1604A","A1642G","G1643A","C1656A","A1664G","T1730C","A1736G","A1819G","A1903C","G1920A","C1996T","T2080G","T2087C","A2182G","A2212G","G2224A","A2272T","C2281T","G2341A","C2386T","A2410G","A2416G","C2420T","T2440C","T2449A","C2464A","C2488T","A2557G","C2575T","A2579T","T2581C","C2584T","G2602A","C2626A","G2725A","G2727A","G2728A","T2788G","G2821A","G2833A","A2839C","C2857T","G2887A","T2905A","A2925G","A2932G","T2935C","A2951G","A2959G","C3013T","A3019G","G3046A","A3070G","A3080T","G3093A","T3132A","A3196G","A3226G","C3232T","T3253C","G3293A","C3319T","G3334A","G3364A","T3368C","G3383A","G3398A","A3403G","T3450C","G3490A","A3502G","G3529A","G3562A","T3628C","C3649T","A3655G","G3664A","G3694A","C3712T","T3730C","A3787C","A3805G","T3826C","A3952G","T4006C","G4057A","A4102G","C4110T","A4145G","T4147A","A4178G","G4183A","A4228G","A4273G","A4391T","T4498C","A4525T","C4576A","T4656C","A4661G","T4678G","G4684A","T4703C","C4761T","C4771A","A4774G","T4805C","T4826C","T4827C","A4874C","G4887A","T4925C","A4949G","T4969G","C5034T","A5045G","T5062G","G5075A","T5084C","G5085A","A5090G","G5093A","T5102C","A5159G","T5206C","T5239C","G5267A","A5278G","T5293A","G5363A","G5396A","T5471A","T5487C","A5496G","A5556G","C5563G","T5576G","T5577A","T5578G","C5579A","A5594G","C5602T","C5611A","C5620T","A5622C","G5629T","A5659C","T5677A","T5686C","G5711A","A5720G","G5730A","T5739G","A5742G","A5784G","A5787T","T5788-","T5789-","A5790-","T5791-","C5792-","A5793-","G5794-","C5795-","A5796-","T5798A","T5799G","T5801A","-5805A","-5806T","-5807T","G5808A","-5809C","-5810T","-5817G","C5827G","G5839A","A5869G","C5878A","T5887C","C5917A","A5983G","C5998T","G6020A","T6024A","A6025C","A6030T","C6052T","A6053G","C6097T","C6110G","A6124C","T6134C","T6151C","A6159C","G6167A","T6169C","-6172G","-6180A","A6185C","T6187G","A6188T","-6203G","-6205G","A6208-","A6209-","G6211-","A6212G","A6214C","-6215A","C6241T","A6251G","A6260G","G6261T","C6262G","T6264G","G6274A","G6275A","G6277A","C6278A","A6303G","A6304C","T6325C","A6326G","A6327G","T6328C","T6334C","C6336A","G6345T","G6346A","G6349A","T6351G","C6364A","G6368A","T6369C","A6420T","G6442A","T6445C","C6457A","A6488G","T6493C","A6595G","T6599A","C6601T","G6604A","T6637A","A6693C","-6703A","A6730G","C6758T","T6763C","A6765C","T6772A","G6773A","G6774A","G6776A","C6800G","C6807T","-6836A","-6837A","-6838T","A6936C","-6956T","-6957T","T6958A","A6962G","-6968T","-6969T","-6970G","-6971A","-6972A","-6973T","-6975A","-6977G","-6978A","-6979T","C6984-","A6985-","A6986-","A6987-","T6988-","A6989-","A6990-","C6991-","-6995G","-6996A","G6999A","C7020A","A7037T","G7055A","C7087T","G7101A","A7102C","C7134T","A7135G","A7149T","A7154C","T7156G","A7158G","C7164G","A7249T","C7267T","G7270A","G7307-","T7308-","G7309-","G7311C","A7322C","T7325G","A7420G","G7426A","C7463A","A7532C","G7549A","G7552A","C7605G","A7620G","T7622A","C7623G","G7627A","G7633T","G7640C","T7642G","G7688A","C7690T","T7691G","C7702A","G7712C","G7717A","A7741G","T7762C","T7774C","A7782G","G7790A","A7791G","A7820T","T7836G","C7939T","C7960A","A7974G","A7977G","A8006G","A8014G","T8020C","T8043A","G8050A","G8079A","A8119G","G8141A","A8142C","T8145C","G8170A","G8173A","A8180G","A8188G","G8194A","C8227A","G8242A","G8255A","T8279G","A8288G","C8291T","C8293A","A8297G","C8304G","T8323C","A8326G","G8342A","G8354A","T8366A","A8367G","-8370T","T8374G","T8375G","T8426G","C8445A","A8447G","C8450T","G8453A","C8460T","A8475-","G8476-","T8477-","-8487G","G8490T","A8494C","T8507C","A8516G","A8525G","G8531A","G8537A","T8543C","G8554A","C8565T","G8588A","C8590G","G8654A","A8693G","T8740C","A8746T","T8759C","G8798A","A8815C","G8822A","C8840T","A8851T","G8858A","C8868T","A8874G","C8904A","T8918C","G8922A","T8923G","G8945A","C8960A","T8966C","C8967A","A9005G","T9012C","T9014C"],"INT":["T112I","T124A","I135V","T206S"],"RT-p51":["S162C","D177E","R211K","E248D","K277R","T286A","I329L","G333E","F346Y","T377M","E430K","V435I"],"RT-p66":["S162C","D177E","R211K","E248D","K277R","T286A","I329L","G333E","F346Y","T377M","E430K","V435I","L452S"],"gp120":["T21K","V56I","V57D","E59V","M67V","Q86E","N102T","D105N","-107N","-109D","N111Q","T112S","-118V","-119K","I133V","S136V","I137R","V141I","Q142K","K150S","N158G","T161N","R164I","I166R","V172T","Y189F","N201K","K212A","F249I","H280P","E294N","H302Y","N304T","S306R","G307K","E308K","Q316E","A318V","-328N","Q361P","-368N","N369Y","-374T","-375D","-376P","-377L","N379D","-381L","S383N","P389Q","I395F","E401K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T112I, T124A, I135V, T206S; RT-p51: S162C, D177E, R211K, E248D, K277R, T286A, I329L, G333E, F346Y, T377M, E430K, V435I; RT-p66: S162C, D177E, R211K, E248D, K277R, T286A, I329L, G333E, F346Y, T377M, E430K, V435I, L452S; gp120: T21K, V56I, V57D, E59V, M67V, Q86E, N102T, D105N, -107N, -109D, N111Q, T112S, -118V, -119K, I133V, S136V, I137R, V141I, Q142K, K150S, N158G, T161N, R164I, I166R, V172T, Y189F, N201K, K212A, F249I, H280P, E294N, H302Y, N304T, S306R, G307K, E308K, Q316E, A318V, -328N, Q361P, -368N, N369Y, -374T, -375D, -376P, -377L, N379D, -381L, S383N, P389Q, I395F, E401K, R416N, T427M, N432I, N434Q, N435S, T437S; gp41: V2A, G3-, F8V, L54M, K77Q, T101S, K106R, E110D, D113Q, K122R, D129S, L130V, N133K, E137Q, N160S, D163S, I173L, V178G, E224G, E225G, V247D, R259H, E280T, V281A, S293G, V318I, V321I, F326G, I329V, I332V; nef: S8R, S9G, -10L, -11G, D28E, H40Y, S46-, A50S, N51T, R71K, P75S, A83G, Y135F, E158A, Q170L, P176S, R178G, R188S, V194R, C206*; p1: K4R, H9N; p17: K28R, Y79F, K91R, E102D, S111I, K114R, A115V, S126N, Q127S; p2: T12N; p24: I15L, N120H; p6: N47S; p7: R34K, M46I; pro: E35D, R41K; rev: K14R, F21E, L22I, P31S, S56G, W58R, A68T, T91A, G98D, A108T, V109I, E111G, T114A, E116K; tat: R7K, T24N, F32Y, Q63E, V67G, S68D, P77L, P84Q; vif: I31S, A62D, K63R, I128R, T151A, I159R, A167T; vpr: T19A, A55T; vpu: Q2N, Q5Y, A8S, I18L, S24T, F27L, R35K, K38R, D44E, E60D, L61Q, S62E, A63E, V65L, E66-, M67-, G68-, H74D, 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S39N, I101L, A124N, K219N; RT-p51: W88C, H121Y, D123G, I135V, S162Y, F171Y, I178M, F214L, K245T, P272A, K275R, Q278K, D324E, K356R, R358K, K366R; RT-p66: W88C, H121Y, D123G, I135V, S162Y, F171Y, I178M, F214L, K245T, P272A, K275R, Q278K, D324E, K356R, R358K, K366R, M452K, T470M, E471D, L491S, S554T; gp120: A3T, L6M, E19D, K21T, K37V, V57L, E59G, E69K, I80V, K89Q, N102D, -105D, N108-, T110-, N113-, -124G, S130T, T134A, T135E, I137S, Q142K, K143T, V144A, H145R, K150A, V153I, P155Q, D157N, N159S, -162K, I166T, N167H, T170A, T174K, S181T, K203E, N206S, P210L, A238N, E239L, E240A, -241G, V242Q, I243V, E265N, N267T, T269V, S278G, I281M, Q287R, A288G, F289M, Y290F, A291Y, T292A, G293N, T308K, R322G, H324Y, -326N, N328A, K329T, T330I, I332-, S336P, S337P, T344M, S347T, K361Q, -368T, N369W, T371N, -372N, -373S, -375A, -376I, -377V, -381N, -382G, P389Q, Q412P, V418I, N420D, R428H, V431L, -433G, N435T, -436N, N437T, -438T, T439I, T471G; gp41: M4I, F7V, F8L, A21T, S23A, I24L, R46K, E49Q, H53Q, K106R, Q108Y, D109S, E110D, M115L, D129E, D153G, K154D, S165T, N166K, P213S, R214K, L304F, N305D, R334T; nef: I10V, A23T, E24R, E28A, D38A, R39T, P53S, D54S, E64D, T80S, G83A, Q107A, E108D, Y115H, Y120F, C163S; p17: K12R, K26R, K28Q, R30K, L46I, A54S, Q59K, I61L, T72S, Y79H, V82I, E93D, D102E, K103Q, E106K, S111G, K114R, T115S, A118K, A120D, S126N; p2: A10T; p24: Q50S, A116T, P123V, K154R, E180D, P207Q, S225G; p6: P30L, D32E, S51L; p7: P9Q; pro: N37H, P39S, I72V; rev: D7A, P31L, A32Q, S54T, E57D, P67S, S86G, E87Q; tat: D2E, N7S, L8Q, K19E, N24S, L36M, R53S, T77P, G79D, D80H, *87S; vif: N19R, M29I, S46T, G101D, Q105R, K122S, K141Q, P156S, T159R, V170T, T188S; vpr: H15F, N28S, R36N, Q41N, H45Q, E58V, V89A, S93A, S96P; vpu: -6E, I13V, I18L, I20V, V21I, R37K, R47S, K63T, -75A, -77W, -78H, 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R20K, M50I, V112I, A124G, D134G, I135V, R173K, N219K; RT-p51: K103N, S107T, H121Y, I135T, S162N, I178M, P243T, V293I, K297T, A304E, D335E, A376C, A435V; RT-p66: K103N, S107T, H121Y, I135T, S162N, I178M, P243T, V293I, K297T, A304E, D335E, A376C, A435V, K454R, R463K; gp120: V3G, E34S, N52S, D71N, E74D, T78E, N102E, T104G, -106V, -107G, -109K, -111S, -114S, -115N, -116S, -117S, -118A, -119S, -120L, K127T, V136A, K140R, Q142K, H145Q, L151I, D157-, T160E, -162L, S181T, E240G, -241Q, S278G, Y290V, T292G, G293E, D294V, D297N, E307G, H315Y, K316N, T319N, N327-, K334E, T345S, S347T, K361R, -368N, T374-, N378-, N379-, T380-, R391K, R428L, G430R, G431Y, N432V, -433D, S434N, N435G, -436T, -438V, F440L, K462Q, V468I; gp41: Q108Y, S125D, V137I, A151S, A156S, I177V, V178I, V194I, R196S, I210T, P213A, G215R, D230G, I235T, N239S, L242F, P243I, E247Q, R250W, I301V, A310V, I321L; nef: K4R, S15R, M20I, A32P, N51R, D98E, I101V, Q125H, E133V, F135Y, T138C, C163S, I168M, R178K, M182V, K184R, R188H; p17: E42D, G49D, E55D, E62G, K69Q, L75I, Y79F, T84V, R91K, K98S, G102N, I104V, E105K, K114T, V128I; p2: V7M, A10M, A11N, A12T; p24: A54T, T58S, L83T, R203K, S225G; p6: S14C, S24P, P30M, D32E; p7: M1V, I12T; rev: P31R, G33E, T61H, G65A, R66G, A68V, S106P; tat: N7K, N24G, K29N, S61G, N67D, S75P; vif: Y30H, K37D, Y44F, D61E, T67I, H73N, D113N, S130Y, A137T, I154V, A155T; vpr: N28S, P37A, E55R, I61T, I70T; vpu: F16G, I18L, A19C, I28L, K35Q, R37K, K63T, M67R, L82V"}}},{"name":"KU168279","node_attrs":{"div":0.11682999999999999,"accession":"KU168279","clade_membership":{"value":"H"},"country":{"value":"CF"},"date":{"value":2002.0},"Strain_name":{"value":"LA25LeMi"},"LANL_subtype":{"value":"H"}},"branch_attrs":{"mutations":{"nuc":["A66C","A67T","G92A","T153A","T154A","T156-","A224G","T227A","G278A","G354A","A388G","A417C","C471A","T473A","A549T","T567A","G579A","G614T","G629A","A640G","G641A","C662T","A678G","A690G","G693-","C694-","T695-","G696-","A697-","T698-","A699-","A700-","A701-","T731C","A740G","C749T","A759C","T760C","T782C","A803G","G818A","T858C","C884T","A941G","T1004C","A1034G","G1109A","C1118T","A1242T","C1243G","A1263T","G1298A","T1359A","A1400G","A1450C","A1474G","C1481T","A1496G","G1588A","C1692A","G1766A","C1767T","T1768C","A1771G","C1782-","C1783-","-1785T","-1786C","A1793G","G1852A","A1870G","A1990G","C1996T","T2080C","G2224A","T2347C","C2353T","C2356T","A2398G","G2459A","A2512T","T2527C","A2563T","A2592C","T2635C","A2686G","C2715A","T2716G","G2728A","A2755G","A2887G","A2919G","A2929C","A2938G","C2968T","G2989A","G3019A","G3029A","A3030C","T3059G","A3099G","A3116G","C3133T","A3217G","C3266T","G3427A","G3439A","G3454A","A3491G","T3496C","T3497A","G3505A","T3544C","A3643G","G3680C","G3685A","T3695G","A3835G","A3910G","A3964G","G4081A","A4109G","G4145A","C4149T","G4175A","G4267A","A4303G","A4376G","T4405C","A4432T","A4474T","A4642G","T4678A","T4679G","A4692C","G4695A","A4697G","T4761G","T4769C","T4772C","C4781T","A4838T","G4856A","G4949A","A4950C","A4956T","A5015C","A5059G","A5065G","A5087C","C5116A","A5136C","G5140A","A5155G","G5167A","G5179A","G5200A","A5285G","G5296A","C5356T","C5382A","T5391C","C5397T","T5399A","A5471T","T5482G","G5538A","A5565G","G5566A","A5574G","C5579T","A5581G","C5584T","A5601C","A5602T","A5619C","G5623A","G5624C","A5625C","C5663T","G5706A","C5727T","A5733G","T5789C","C5792G","C5793A","A5795G","C5797A","G5803C","G5805C","-5809C","-5810T","-5811T","-5812G","-5813T","-5814G","-5815G","-5816A","-5817G","-5818A","-5819G","-5820G","-5821G","-5822G","-5823G","T5826G","G5853A","G5856A","C5859T","A5865G","C5869T","C5878T","A5946G","C5956A","A5957C","A5964T","G6059A","G6079A","A6124C","A6136G","A6172C","-6173A","-6174T","A6188G","C6190G","G6192T","T6196C","-6201A","C6205T","-6207C","-6208A","-6209T","T6210A","-6211C","-6212A","-6213C","-6215G","-6216A","-6217C","A6221G","G6225A","C6293G","T6298C","G6311A","T6328G","A6333G","G6379A","T6436G","T6445C","C6489T","A6505G","A6525G","A6571G","G6572-","A6573-","A6574-","C6575G","A6593G","C6607T","A6611G","C6613T","A6622C","T6643A","C6660G","A6683C","-6689G","G6693A","T6719A","G6725A","C6777G","C6779G","A6781C","A6785G","T6787G","A6791G","T6794C","A6798C","A6809C","G6819A","A6820G","-6833A","T6850A","T6853C","A6855G","A6875T","G6905A","G6940A","A6974-","T6976-","-6979C","-6980G","-6983A","-6984A","-6985C","T6988A","A6990C","A6992T","-6996G","A6997C","-6998A","-6999C","T7003C","-7005A","C7006T","-7009A","C7045G","A7066G","A7089G","A7090C","A7094G","G7106A","G7137A","G7143A","G7152T","A7154T","A7157G","A7158C","T7159A","T7162G","-7164A","-7166T","-7167T","-7171T","G7182T","T7192G","A7240G","T7321C","A7366G","A7373C","G7440A","A7492G","C7561T","A7621G","G7640A","C7678T","A7689G","T7713A","C7723T","T7796A","T7852A","T7853C","G7862T","G7915A","A7938G","A7953G","G7964A","A7974G","T8016C","C8031G","C8038A","G8044A","G8079T","G8107A","T8124A","A8152G","T8155C","A8163G","C8189T","T8197G","T8203C","G8254A","T8323A","G8330A","A8354C","A8388G","G8414A","A8423T","A8426G","A8486G","T8492C","C8510A","A8525G","C8552T","T8594C","T8595C","C8603G","A8653G","G8682A","A8744G","A8824C","C8825T","A8829T","G8846A","G8873A","C8906A","G8917C","G8923C","T8935G","T8972A","T8973-","G8991A","T9029C","A9042G","T9176A"],"INT":["A124T","A125V","D134N","I201V"],"RT-p51":["E122K","K166T","A207E","K275R","Q278H","E312T","S322A","D335G","I341V"],"RT-p66":["E122K","K166T","A207E","K275R","Q278H","E312T","S322A","D335G","I341V","I466V","S468T","E529Q","S534A"],"gp120":["S1N","T2V","E4G","K31R","T35P","K37M","E69K","T78A","E105D","-106G","-107E","N108Q","T110-","N113-","-126L","L147V","V153I","T161K","T212M","K224R","K247E","T253A","T269S","K277Q","I279V","F289I","T308R","Q309D","N311E","T313A","H315S","T319Q","R322K","K334R","I341L","G351R","-368D","S370K","-372S","-373S","-381M","N397K","Q412S","N414D","V418I","R428N","G430E","-433M","N435A","-436E","-438F","G443V","D446E"],"gp41":["I24L","R46K","D113N","D129G","V137D","N140T","S165T","V187F","N212S","D217G","G221R","E224G","V238A","P243R","R259L","L274Q","N287S","N298K","F340L","A343T"],"nef":["K4N","I16V","T48M","K104R","V114I","N161T","M182I","R192T","R194T","Q198R"],"p17":["V7I","K18R","K28Q","L46I","T72S","K76Q","L78I","V82I","E93D","T115A","T119A","A120E","D121K","K122D","E123S","D125-","S126-","K127-"],"p2":["N9T"],"p24":["M10P","T171C","T178S","S210T"],"p6":["P5T","P30S","K31R","P35S"],"p7":["K3R","R41K"],"pro":["I64M"],"rev":["S8N","K17R","K20R","R39K","T61E","L64M","E87K","I102V","S103P","A114V","*117E"],"tat":["D2E","L8Q","Y32F","L36V","D64N","P68L","I69V","P70S","T77A","T82A"],"vif":["N19R","I31K","K36Q","L59V","K122Q","I124L","K158R","K160R","R167S","P177H","G185E","N190S"],"vpr":["Q11P","E55G","I61V","T84I","P93T","S96P"],"vpu":["G6T","A19V","E60D","L61T","S62-","M67-","G68-","-69V","-70E","-71R","-72G","H73Q"]},"labels":{"aa":"INT: A124T, A125V, D134N, I201V; RT-p51: E122K, K166T, A207E, K275R, Q278H, E312T, S322A, D335G, I341V; RT-p66: E122K, K166T, A207E, K275R, Q278H, E312T, S322A, D335G, I341V, I466V, S468T, E529Q, S534A; gp120: S1N, T2V, E4G, K31R, T35P, K37M, E69K, T78A, E105D, -106G, -107E, N108Q, T110-, N113-, -126L, L147V, V153I, T161K, T212M, K224R, K247E, T253A, T269S, K277Q, I279V, F289I, T308R, Q309D, N311E, T313A, H315S, T319Q, R322K, K334R, I341L, G351R, -368D, S370K, -372S, -373S, -381M, N397K, Q412S, N414D, V418I, R428N, G430E, -433M, N435A, -436E, -438F, G443V, D446E; gp41: I24L, R46K, D113N, D129G, V137D, N140T, S165T, V187F, N212S, D217G, G221R, E224G, V238A, P243R, R259L, L274Q, N287S, N298K, F340L, A343T; nef: K4N, I16V, T48M, K104R, V114I, N161T, M182I, R192T, R194T, Q198R; p17: V7I, K18R, K28Q, L46I, T72S, K76Q, L78I, V82I, E93D, T115A, T119A, A120E, D121K, K122D, E123S, D125-, S126-, K127-; p2: N9T; p24: M10P, T171C, T178S, S210T; p6: P5T, P30S, K31R, P35S; p7: K3R, R41K; pro: I64M; rev: S8N, K17R, K20R, R39K, T61E, L64M, E87K, I102V, S103P, A114V, *117E; tat: D2E, L8Q, Y32F, L36V, D64N, P68L, I69V, P70S, T77A, T82A; vif: N19R, I31K, K36Q, L59V, K122Q, I124L, K158R, K160R, R167S, P177H, G185E, N190S; vpr: Q11P, E55G, I61V, T84I, P93T, S96P; vpu: G6T, A19V, E60D, L61T, S62-, M67-, G68-, -69V, -70E, -71R, -72G, 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A125T, A278D; RT-p51: N334D; RT-p66: N334D, I495L; gp120: E267N, G307E, -374T, -377S, -385T, T387I; gp41: Q77K, M115L, G215E, P216L, G221R, T270I; nef: I16V, H116N, Y120F; p17: Q112K, -128V; p24: K154R, P207Q, T210S; pro: I13V, G16E, M89I; rev: I78L; tat: N40K, L68P, D80N; vif: L8M, K67T, Q105K, M109L, D134E; vpu: -6I, I18L, R47A, E58D, -68G, -69N"}},"children":[{"name":"MF372645","node_attrs":{"div":0.13687,"accession":"MF372645","clade_membership":{"value":"CRF92_C2U"},"country":{"value":"CD"},"date":{"value":2008.0},"Strain_name":{"value":"DRC796"},"LANL_subtype":{"value":"CRF92_C2U"}},"branch_attrs":{"mutations":{"nuc":["A224G","G317A","A326G","G362C","A365C","G368A","A380C","G401A","C418G","A419C","A424G","C426T","A435C","G491A","A499T","T516A","A524G","C528A","C590T","A607G","G608A","G644A","A654T","G671C","A676C","C684A","G693A","C747A","A774C","G791A","A839C","A878G","C879G","A880C","G956A","T988C","T992G","T1004C","G1019A","A1101G","G1109A","C1115G","T1260G","T1263A","G1271A","A1307G","G1341A","A1459G","C1490T","A1565G","A1586G","G1589A","G1619A","T1646C","G1657A","T1658C","A1670T","G1673A","T1676C","T1679C","T1681C","C1721T","A1725C","G1733A","G1743C","A1759G","A1771-","G1772-","G1773-","C1775-","A1780T","T1781C","C1783T","T1784G","G1785C","C1786T","T1787C","C1790T","T1792G","G1794A","A1795C","T1797-","C1825T","T1831C","A1832T","T1854C","G1855A","A1894T","A1907T","A1908C","C1966G","T2035C","T2041G","T2104C","A2140G","C2281T","A2362G","G2456C","A2461G","A2462G","G2473A","C2485T","T2499G","C2533T","T2542C","G2583C","C2620T","A2674G","G2682A","G2705A","A2727G","T2737G","C2831T","T2908C","C2909T","G2926A","G2929A","G2947A","C3067A","T3068A","C3100T","G3168A","G3211A","T3225G","A3391T","C3394T","C3449T","G3477A","A3565G","G3595A","A3684G","A3733G","C3734A","T3754C","T3755A","C3773T","A3795G","G3808C","T3856A","G3878C","G3891A","C3908T","T3970C","A4003G","A4012G","G4027A","A4030G","G4060A","T4110C","G4145A","G4156A","A4246G","G4285A","C4381T","C4412T","A4433G","A4555G","G4636A","T4679C","T4702A","C4754T","T4761G","T4776C","T4800C","T4805G","T4820C","G4859A","C4890A","A4966G","G4982T","C5034T","A5057G","T5102C","A5112G","A5113G","G5143A","C5213A","C5221T","A5225G","C5251T","A5278G","C5285T","C5311T","-5359C","A5400C","T5424C","A5432G","T5457C","C5491T","G5548A","A5557G","T5612A","-5626A","T5648G","C5653A","A5659T","A5721G","A5733G","A5734G","G5737A","G5747A","T5787A","A5788T","C5789T","A5790G","-5791T","G5808-","G5842A","T5843A","T5854G","T5857G","G5882A","G5893A","G5900A","G5902A","A5935C","G5956T","A6028C","A6061C","T6072C","G6073A","A6092G","A6121G","A6136G","-6167G","-6172A","-6174C","-6175C","A6177C","-6180A","C6183G","T6184A","-6186C","C6189A","T6190A","A6194T","-6195C","-6196T","-6198C","A6200G","-6201A","-6202C","-6207C","-6208T","-6209C","-6211G","-6212T","A6253G","A6263T","A6266T","T6287C","C6293T","A6327G","G6339T","T6340A","C6347T","T6358C","A6368G","G6373A","C6397G","T6409C","C6469T","C6548T","G6550A","C6559T","G6577A","A6589G","G6611T","A6616G","G6631C","T6643A","G6644T","T6676C","-6689G","A6723T","G6732A","A6733C","A6734G","A6751G","C6787T","A6796G","A6799T","G6806A","T6815A","C6818A","C6824G","T6826A","T6827C","T6828A","C6829T","-6830T","-6831T","-6832C","-6833A","-6834A","-6835G","G6850T","A6855G","A6881G","C6895T","C6938T","A6944T","A6945C","C6951A","A6952C","C6966-","-6983A","-6989G","-6990A","-6991C","-6992A","-6993C","-6994A","-6995A","-6996A","-6997A","-6998A","-6999G","-7000C","-7001A","-7002A","-7003T","-7005A","C7009A","T7087C","A7090G","A7106G","T7114C","G7132A","C7136T","A7138G","G7145C","G7146A","-7153T","C7164G","A7169G","-7170T","A7245G","C7250A","A7256G","C7267T","A7268G","A7396G","A7402G","C7429T","A7477G","A7522G","C7590G","C7605G","C7625A","A7646C","C7690A","C7699T","A7722G","C7747A","A7750G","G7753A","A7773G","C7792A","T7801A","A7840G","G7880A","A7931G","T7932C","C7940T","A7953G","C7959T","A7977G","C8005G","T8028C","G8085C","G8093C","A8095C","G8107A","C8147T","C8155T","T8169C","G8170A","G8194A","C8221T","A8224T","G8254A","G8264A","G8267A","C8286G","T8287C","-8292A","-8309A","-8330G","G8354A","T8387G","A8400C","G8402A","C8445A","G8461A","G8465A","A8474C","A8530G","A8534G","A8555G","C8603T","C8640T","A8655C","G8666C","G8678A","C8684T","C8699A","G8738A","T8770A","T8786G","A8798C","A8804G","G8822A","T8847A","A8874G","A8885G","C8906A","A8969C","G8970T","A8971C","G8978A","T9012A"],"INT":["K7R","E11D","N17S","N27K","E35Q","S39N","M84I","V112A","A124T","I220V"],"RT-p51":["D121H","N123D","I135R","S163T","K174Q","G196E","E204K","K211R","F214L","P272S","D324E","L325I","R358K","M377R","E432D"],"RT-p66":["D121H","N123D","I135R","S163T","K174Q","G196E","E204K","K211R","F214L","P272S","D324E","L325I","L329I","R358K","M377R","E432D","R461K","K530R","Q547K","S554T"],"gp120":["N5K","V10I","V16I","E34N","L58F","K69N","V73A","I80V","N105D","A106I","-107K","-109S","-111D","-112T","-113L","-114S","I137L","R138W","Y145H","N158S","N161T","S162Q","T172A","M173I","A253F","V264L","Y290F","A291T","T292D","G293A","D294V","H302Y","E309K","Q315K","K316-","V317-","A318-","K319-","K320-","L321-","Q322-","E323-","H324-","F325-","V332I","Q334R","I343V","N364S","R365-","T366-","Y367-","-373D","-375I","-378N","-384D","I418V","R428W","G431H","-433S","N434T","T436E","N437S","T439A","K464R","L466I","I468V","K472E"],"gp41":["T96S","T101S","Q108K","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K7R, E11D, N17S, N27K, E35Q, S39N, M84I, V112A, A124T, I220V; RT-p51: D121H, N123D, I135R, S163T, K174Q, G196E, E204K, K211R, F214L, P272S, D324E, L325I, R358K, M377R, E432D; RT-p66: D121H, N123D, I135R, S163T, K174Q, G196E, E204K, K211R, F214L, P272S, D324E, L325I, L329I, R358K, M377R, E432D, R461K, K530R, Q547K, S554T; gp120: N5K, V10I, V16I, E34N, L58F, K69N, V73A, I80V, N105D, A106I, -107K, -109S, -111D, -112T, -113L, -114S, I137L, R138W, Y145H, N158S, N161T, S162Q, T172A, M173I, A253F, V264L, Y290F, A291T, T292D, G293A, D294V, H302Y, E309K, Q315K, K316-, V317-, A318-, K319-, K320-, L321-, Q322-, E323-, H324-, F325-, V332I, Q334R, I343V, N364S, R365-, T366-, Y367-, -373D, -375I, -378N, -384D, I418V, R428W, G431H, -433S, N434T, T436E, N437S, T439A, K464R, L466I, I468V, K472E; gp41: T96S, T101S, Q108K, N129K, N140S, D148E, N157S, D163E, V193I, P213S, D217G, P219L, E225G, L242S, R261T, V264L, V289A, V321I, V322I, A328G, L330Y; nef: M20L, R40H, E62Q, K105Q, E108D, F143Y, E152D, C169S, S188Q; p1: R9H; p17: T28S, K30R, I34L, L61M, T62A, Q65K, K91R, I107L, K112N, K114T, Q117K, A120T; p2: T8N, N9T, -10S; p24: L6I, I15L, Q50A, V86A, H87Q, M96I, I124V, D128E, S177A, S178T, G204S; p6: L1P, A22P, -26R, K27Q, Q28E, E29K, D32-, S40-, K42-, S43-, L44-, P49L, L51S; pro: T12S, M19T, N37S; rev: P31L, H53D, E79D, C82S, I83L, E87K, S100L, P103S, A108T, E116K; tat: K19R, A58T, S61G, S75P, P81S, T82A, P84S; vif: R17K, F39Y, L59V, H73Q, L102M, H127R, R132S, R159I, N176G, S186N; vpr: Q3R, P37T, S41G, R85P; vpu: I2N, L5I, V7-, V10A, V14G, L16I, I43V, D44N, A47E"}}},{"name":"MF372644","node_attrs":{"div":0.14259,"accession":"MF372644","clade_membership":{"value":"CRF92_C2U"},"country":{"value":"CD"},"date":{"value":2008.0},"Strain_name":{"value":"DRC768"},"LANL_subtype":{"value":"CRF92_C2U"}},"branch_attrs":{"mutations":{"nuc":["A217G","-305A","G367A","C379A","A447G","A461T","C498T","A499C","C520T","A554G","G615A","A632G","G674A","A678C","C679A","C681A","G686A","A691G","T695G","G697A","C698A","A700C","A703G","A704-","-707C","-708A","-709A","-710A","-711G","-712A","-713A","T728C","G755A","A810G","A836G","T884C","T974C","G977A","G1077A","A1079C","C1137T","T1166C","T1244C","G1256A","T1262C","T1344C","C1362T","G1400A","T1409C","-1444C","-1445C","-1446A","C1447A","C1448T","A1450-","T1451-","A1452-","C1453-","A1454-","-1456C","-1457C","A1461G","G1476A","T1501C","A1503G","G1543A","A1563G","C1680A","T1682C","G1687C","G1726A","C1756A","A1771G","-1774A","T1796C","T1828G","A1832G","T1868C","T1873C","G1901A","A1907G","C1966T","A1972G","A1984T","G2042A","T2101A","A2191G","T2365C","A2368G","A2395G","A2413G","T2449G","G2602A","C2615A","A2629G","G2704A","A2707T","A2716C","T2803A","C2839A","A2842G","A2846C","G2847A","G2869A","C2909G","A2950T","C2960T","A2977C","C2978T","A3080C","A3124G","G3169A","C3223T","A3238G","C3274T","G3334A","T3399C","C3405T","G3427A","T3433C","G3439A","A3442T","G3494A","A3538C","G3556A","T3560G","A3570C","G3574A","T3602C","G3631A","G3643A","A3651G","A3676G","G3737A","G3772T","A3805T","A3824T","C3857T","T3889C","A3907G","T3967C","T4009C","A4064G","T4177G","A4228G","A4231G","T4258C","A4366G","A4397C","C4399A","A4410C","A4427T","A4459G","G4498A","C4501T","A4525G","A4528T","A4531G","C4543T","A4552G","A4573G","C4579T","G4622A","A4644G","T4646A","C4667T","G4677A","T4678G","A4684G","G4687A","T4691A","A4693C","G4694A","A4697T","G4719C","A4721G","C4724T","A4727G","A4737G","T4742C","T4761C","A4769T","G4774A","T4799C","G4816A","G4878A","A4937C","C5006T","T5018C","A5051G","C5052A","T5062C","A5065G","T5091C","A5122G","C5125T","A5146G","A5179G","A5200G","G5233A","C5237T","C5239T","A5290G","T5303A","A5305G","A5336C","T5339C","T5356C","-5359T","A5360G","A5447G","T5448A","T5472A","A5494C","T5511C","A5513C","G5538A","A5545G","A5547C","G5548C","G5575A","C5602T","T5612C","T5613A","T5614C","A5615C","-5620G","-5621A","-5622A","A5625C","-5626T","T5627G","A5628G","G5635A","C5639G","T5641C","A5659C","C5679T","T5684C","T5686G","A5687G","A5689C","T5704A","T5707A","T5708G","A5712G","A5717G","A5718G","G5720A","T5728A","G5730A","T5739A","G5747C","G5748A","T5787C","-5791G","C5792A","A5793G","C5797T","-5799G","-5800T","-5801C","-5802A","-5803G","-5804C","-5805G","-5806C","-5807T","G5811-","A5818G","A5845C","G5861A","A5865G","C5866G","A5907G","A5926G","A5955G","G6022A","A6030G","A6044G","T6076C","A6133G","A6142T","T6145C","C6163T","T6166C","-6167A","-6172C","-6174A","-6175A","-6180C","T6181C","T6184C","-6186A","T6187A","A6188G","A6191G","-6195A","-6196A","-6198G","-6201T","-6202A","-6203G","-6204G","-6205C","-6207T","-6208A","-6209G","T6210G","-6211T","-6212A","C6213A","G6214C","G6217A","G6218-","A6219-","G6220-","C6221A","G6225A","A6230C","A6234G","T6241C","T6246A","G6268A","C6271T","A6273G","A6274G","C6275G","A6278C","A6279G","G6280A","G6284C","T6285A","G6290T","G6303A","A6313G","C6317T","A6320C","G6323A","A6338G","C6427T","A6438T","G6442A","A6525G","G6526A","G6532A","A6572G","G6577C","A6605G","G6631T","T6655C","A6682G","A6683C","T6688C","-6689A","A6691G","A6752C","T6758C","A6764C","A6780G","A6781C","A6799G","T6838C","G6841C","A6848G","G6850A","A6861C","T6863G","C6864T","C6888T","A6889G","T6892C","G6935A","C6937A","T6949A","-6953T","-6954A","-6955C","-6956A","-6957A","-6958T","-6959G","-6960T","-6961T","-6962A","-6963A","-6964T","-6965A","-6967A","-6968A","-6969A","-6970C","-6971A","-6972G","-6973T","-6974A","-6975G","-6976T","-6977T","-6978A","-6979T","-6980G","-6981A","-6982G","-6983C","-7005G","A7016C","C7018T","G7026A","A7144G","-7153A","T7165C","G7166-","A7167-","G7168-","A7169-","C7171-","A7177G","T7180A","A7297G","C7313G","G7315A","G7322A","G7341C","G7366A","G7390A","A7426G","A7427G","T7432C","T7537A","G7608C","A7620G","C7625G","T7633C","T7642G","A7646T","G7658C","A7672G","T7681C","G7702A","T7775C","G7790A","A7791G","G7807A","A7818G","G7952C","A7962G","A7996C","A7998C","A8029G","G8105A","A8111G","G8136C","G8144A","C8146T","A8151G","A8175G","G8188A","T8200G","T8203A","C8210T","C8220T","T8223C","T8280G","C8290-","T8291-","T8293-","C8294-","A8295-","T8296C","G8323A","G8324A","A8329C","C8331-","G8349A","A8367-","G8368-","T8369-","A8370-","T8371-","A8372-","G8373-","T8374-","T8375-","G8376-","G8377-","A8378-","G8407A","A8457G","G8458A","A8459G","C8492T","C8514T","G8516A","A8519G","A8522G","A8525G","T8543G","A8567C","T8568G","T8585C","G8588A","C8597T","G8604A","T8646C","A8656G","G8666T","C8699T","T8740C","C8741T","A8746T","G8753A","C8756A","G8807A","A8812G","G8830C","T8835C","G8846A","G8861A","A8868C","G8914A","C8915T","G8917C","T8924C","A8969T","C8975A","G8978C","T9029C"],"INT":["E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R192T; p17: S9R, G11E, A15E, S38G, E42D, L55S, T62V, V94I, Q113-, -125K, -126Q, -127Q; p2: -10V, I13-; p24: I27V, A116T; p6: L1I, S3T, R16K, P25-, -26Q, K31R, L50W; p7: G4S, I12T, I13V, R26K, K33E; pro: T12A, E35K, N37D, V82I; rev: S8N, E11A, S61G, S86N, D88G, S99N, D114N; tat: N24R, F32L, K40Q, Y46S, R57G, A58P, D67N, K85E; vif: T20A, V31S, K33R, R34K, K36T, E45Q, I51V, E61D, R63K, R77K, V98I, E117D, P156T, R159T, K160R, K179R, T180I, H187R; vpr: H45Y, L67M, Q77H, I84T, R85L; vpu: I2T, Y3P, L5E, V7W, V10T, A11G, V26A, Y27G, I28L, L33I, L34R, K37R, R38K, W41R, D44E, E63A, M67V, E70L, M71R, G72L, N73L, L77-, 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K44E"}}},{"name":"AY727527","node_attrs":{"div":0.12904,"accession":"AY727527","clade_membership":{"value":"CRF31_BC"},"country":{"value":"BR"},"date":{"value":2004.0},"Strain_name":{"value":"04BR142"},"LANL_subtype":{"value":"CRF31_BC"}},"branch_attrs":{"mutations":{"nuc":["G90C","C96T","A133G","C150T","T200G","A214G","A360C","A400G","C435T","G491A","C499G","G518A","A519C","C521A","A525C","C540A","A561G","T587C","C618A","C635A","T695A","A697C","C698G","A699G","A700C","A701T","A704C","-705A","-706A","-707A","-708G","-709G","-710A","-711A","-712A","-713T","A714-","A715-","G716-","C749T","T777G","A899G","G1173A","T1174C","A1259G","A1277G","G1301A","G1313A","A1329T","G1349A","C1615A","A1642G","A1673G","A1709G","A1771G","A1849G","A2029G","C2202A","G2210A","A2223G","T2257C","A2404C","A2463G","C2575T","A2738G","C2739A","C2828G","A2839T","T2845G","A2923G","G2951A","G3221A","C3274T","A3279G","G3293A","A3403G","A3491T","T3492G","A3532G","T3541C","G3544A","C3545T","A3666T","A3676C","A3682G","T3712C","T3889C","C4105T","C4141A","T4177C","A4420G","T4640C","T4761C","G4769A","T4799A","G4802A","A4845C","A4888G","C4889T","A4900G","C4937A","A5007C","A5024G","G5062T","G5099A","A5113G","T5147A","A5200G","C5237T","G5382T","C5397A","T5454C","T5484G","A5613T","T5616C","-5620C","T5621C","T5626G","G5632A","A5640C","A5644T","C5653T","T5787C","-5809A","C5824A","A5845C","A5846C","T5862G","G5866A","A5879C","A5911T","T5956G","C6004T","G6029C","C6163T","A6176-","A6179G","-6180C","C6183A","T6184C","A6186G","T6187A","C6190A","A6191C","A6193C","C6195A","A6197G","A6201C","-6213T","-6214A","A6215G","T6217G","T6242A","A6275G","A6276G","A6279G","T6325A","A6327G","A6329G","A6335T","A6338G","-6340A","T6421C","C6441T","C6465A","A6505G","A6581G","A6602T","A6635C","A6649T","A6654C","C6660T","A6661G","A6682G","A6787C","A6789G","C6875T","-6953T","-6954A","-6955C","-6968T","-6969A","-6970C","-6971A","-6972A","-6973T","-6974A","-6975G","-6976T","-6977A","-6978C","-6979A","-6980G","-6981T","-6982T","-6993C","T6994A","-7002A","-7005T","C7064A","A7094G","T7095C","A7107T","T7114C","G7146A","C7147-","A7148-","A7151-","T7156G","G7322T","C7328T","G7369A","A7394C","A7402G","G7441A","T7498C","A7519C","T7537A","T7588C","G7589A","C7590A","A7629C","G7630A","A7688G","A7689G","C7692T","T7703A","G7717A","T7801A","C7876T","T7929G","T7932C","A7938T","G7965A","A8006G","T8008G","A8069T","T8094C","T8155C","G8158A","G8159A","G8160A","T8279G","G8292A","G8368T","-8370C","-8371C","A8400C","A8432G","C8488G","C8491A","C8597T","C8651T","A8655C","C8684T","A8746T","A8762C","G8780A","C8832T","A8837T","G8868A","T8883C","A8947T","G9007T","A9009G","G9035A","G9049A","G9063A","C9078-","T9084A","G9085A"],"RT-p51":["A36E","D39N","K43R","K103N","T215D","Q245E","E248D","D250E","A286T","A376T","K395R","A400T"],"RT-p66":["A36E","D39N","K43R","K103N","T215D","Q245E","E248D","D250E","A286T","A376T","K395R","A400T","I466C","Q524L","K527N"],"gp120":["M3R","T9P","E19D","D34E","E59Q","-105D","-106A","-107N","N108R","-109T","T110H","-112G","N113T","S114I","S115V","S130T","K141G","K142R","L156-","N157-","E158-","N159-","Y163-","R164-","I166E","N167S","A196V","T204K","I243V","T250S","H259Q","K261Q","E265N","N267T","T269M","K312R","-368Y","-370S","-372V","-379N","-381T","-383D","-384V","-385N","I414A","K418I","G431D","-436D"],"gp41":["I4L","V7L","L9F","D78E","A96N","E109A","N129G","T130I","L134M","L209R","I210T","N212I","G221E","I235V","S256C","I264T","R324G","W326G","C330Y"],"nef":["S9I","-10P","I20L","G29R","P49R","A50D","K105Q","Y135F","A176T","Y202F"],"p1":["K4R"],"p17":["K22R","M61I","N62Q","Q69K","I76V","A119E","D121A","K122A","-125G","-126N"],"p24":["S16A","V148T","T200S"],"p6":["K31R"],"p7":["T50N"],"rev":["K30N","H53R","S54A","Q74L","F103L","G104K"],"tat":["E2D","N7K","L74V","S75P","T77S","E86K"],"vif":["I87L","D101G","Q105R","D117E","K141Q","R159I","K176R","H187Q"],"vpr":["Y15N","H45Y","A93S"],"vpu":["-2F","-3T","-4L","-5P","-6E","-10G","I13L","H73N","N80P"]},"labels":{"aa":"RT-p51: 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Y15N, H45Y, A93S; vpu: -2F, -3T, -4L, -5P, -6E, -10G, I13L, H73N, 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I104V, T115I; p2: A7T, -10V, I13-; p24: T210S; p6: A25V, S40A; pro: K20R, E35D, D60E, V82I; rev: R38Q, K39R, T91A, Q95R, V109I, A114T; tat: V4I, K29H, I69V; vif: L8M, K50R, V51A, R63S, H127Q, I159R, K176E; vpr: Q3R, P37Y, I60L, I63T, R85Q, A89V, A93T, S94N; vpu: L4I, -5N, -6L, V7A, I9R, L12F, T24I, I43V, E58D, D60E, T61L, E62S, E63T, L64M, S65V, T66D, -68G, V69N, D70L, M71R, G72L, H73L, L74-, R75-, L76-, L77-, D78-, A79-, N80D, 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M50I, K269R; RT-p51: K211R, K275R; RT-p66: K211R, K275R, V531I; gp120: R150K, N334K, S336A, P389Q; gp41: R133K; nef: V16I, E98D, Y120F, M168I, M194L; p17: T15K; p24: I15L, S225G; p6: P30Q, T39I; pro: D60E; rev: K39R; vif: K17R; vpr: L22I, L42I"}},"children":[{"name":"KR820342","node_attrs":{"div":0.14219,"accession":"KR820342","clade_membership":{"value":"C"},"country":{"value":"ZM"},"date":{"value":2009.0},"Strain_name":{"value":"Z3618F_11Jul09_PL_NFLG_SGA11"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["C152A","T157G","G159T","T160-","T200C","T201C","-280G","G286A","A302T","G365C","C379A","G394A","C417A","A418G","G424A","G425A","C426T","C435T","G480A","A491G","T495A","C496A","A500C","A508G","A519C","C540A","T560A","A601T","A604C","A606G","C641T","A686G","G690A","T695G","A697C","C698T","A699G","A701C","T734A","C772T","T788C","C827T","T858C","C879A","A880C","G1002A","G1109A","G1139A","T1335C","G1339A","A1349G","T1359A","T1421G","C1453T","-1455A","-1456A","-1457T","C1460-","A1461G","G1474A","T1646C","A1700T","C1753T","G1766A","G1778A","T1864C","A1903C","A1907G","A1932G","C1960T","T1978A","A2056C","C2083T","A2140G","A2154G","G2173A","A2203C","G2293A","C2335T","T2369C","A2419G","G2463A","C2464T","C2467T","T2499C","A2508C","T2542C","A2579T","T2581G","C2620T","C2626A","G2630A","T2632C","T2638C","A2677G","G2707A","G2725A","A2764G","A2773G","A2839C","G2842A","A2883G","A2884G","A2918C","A2923G","C2927A","A2929C","A2937G","A2950G","C3013T","A3061G","A3088G","G3094A","T3112C","G3173A","T3181A","G3196A","G3205A","T3253C","C3274T","A3277G","G3292A","G3340A","T3349C","A3449C","T3450A","C3500T","G3556A","A3619T","T3628C","T3652C","G3667A","C3676T","G3685A","C3742T","A3769G","G3772A","G3775A","G3808T","G3846A","A3866G","A3876G","G3907A","C3908T","G3952A","A3955T","T3970C","A4057G","A4069T","A4108G","T4153C","T4165C","A4183G","C4204T","A4246G","T4247C","A4270G","A4519G","T4537C","T4633G","A4661G","G4677A","T4691C","C4728A","A4735G","G4737A","G4799T","A4811G","T4827C","A4850G","G4861A","C4937A","A4950C","C4976A","C5034T","T5062G","T5102C","A5112G","G5128A","A5159G","A5173G","C5182T","A5248G","T5275C","A5282C","A5284G","T5293C","C5294T","T5314C","C5333T","G5386A","C5397A","A5453T","T5454C","A5462G","A5467T","T5490C","A5537G","G5538A","G5546A","C5547G","G5548A","G5565A","C5579T","G5599T","T5600C","A5601T","A5603T","T5604A","G5605A","A5608G","A5611G","T5612A","A5613T","A5614T","A5615T","T5617C","-5620G","G5624A","-5626G","C5653T","A5685G","G5700A","G5711A","A5712G","A5734G","T5736G","A5739G","A5742G","T5789C","A5790T","C5792A","A5793G","C5795A","A5797T","-5801C","-5802A","-5803A","-5804C","-5805A","T5826-","A5830-","G5831-","T5836A","T5837G","G5839C","A5840T","G5842T","T5844G","A5845G","T5851A","T5859G","-5867A","-5868A","-5869C","T5870A","C5924T","A5959G","C5974T","T5980C","A6020T","G6022A","T6024C","G6029A","A6032G","T6034G","A6043G","A6118T","A6158G","T6163C","-6169G","-6172T","-6175T","G6179C","-6180A","T6181G","-6186T","-6198G","-6218G","-6219A","-6220G","-6221T","-6225A","-6226A","G6251A","A6253G","G6263T","A6275C","A6278G","G6280A","A6285T","A6287C","C6317A","C6318A","A6319T","A6324G","T6325A","T6331C","C6333G","T6334C","G6336A","T6337C","A6339G","-6340C","A6413C","A6475T","C6496T","C6545T","A6573G","G6577T","C6612T","G6653A","T6654A","G6655T","C6667T","A6686-","G6687-","T6688-","G6689-","T6690-","G6691-","A6692G","G6694T","-6697A","-6698G","-6699G","-6700G","-6701A","-6702T","C6766T","A6773G","A6776T","A6788G","G6803A","G6809A","A6823G","-6830C","-6831C","-6832C","C6833A","C6834A","A6836-","A6837-","T6838-","A6848G","T6883C","T6916C","C6919T","C6938T","T6949G","-6953T","-6954T","-6955T","-6956A","-6957A","A6959G","A6960G","G6963C","T6964A","C6966A","-6967T","C6970G","-6973T","-6981G","-6982T","-6983T","C6984A","-6986T","-6988A","-6992A","-6993T","-6994C","-6995A","-6996A","-6997A","-6998G","-6999G","-7000C","-7001A","C7008A","A7027G","C7079T","A7095G","A7100G","C7101T","A7108T","T7130C","G7132A","A7144G","A7151G","-7153C","T7156G","-7162T","G7199A","G7234A","G7246A","A7252G","G7270C","G7309A","T7325C","T7403C","A7420G","G7428A","T7432C","G7441A","A7517C","A7532C","A7553C","A7590G","A7605T","G7608C","T7609G","T7624A","C7625A","G7628C","T7630A","T7633C","A7688G","C7699T","A7734G","C7771A","A7782G","A7796T","T7801C","T7852C","T7913C","A7938C","C7941A","G7947A","G7995A","A7996C","G7997A","A8014G","G8019A","A8029G","G8030C","G8036A","C8037T","G8050A","A8069T","T8115C","T8122C","C8189T","T8203C","G8216A","T8223C","C8232T","A8284G","T8291A","G8292T","A8294C","C8320T","T8321G","C8328T","A8337T","A8370G","C8382T","A8390T","A8399G","A8402G","G8414A","C8483T","G8490C","G8491A","C8514T","A8519G","A8522G","A8534G","T8563C","T8672G","A8688C","T8708A","T8711C","G8729A","G8739A","T8740C","C8751T","A8793C","G8794A","G8805A","A8806G","C8835T","C8840T","G8861A","C8873A","A8892C","G8905T","C8906G","C8930T","G8933A","T8935A","T8947G","T8948G","T8993C","G8994T","C9028A"],"INT":["E11D","S24N","I31V","K34R","D286E"],"RT-p51":["K20R","S123N","I135T","E138A","S162W","D177E","V179I","E248D","K263R","Q278N","K281R","A360T","M377I"],"RT-p66":["K20R","S123N","I135T","E138A","S162W","V179I","E248D","K263R","Q278N","K281R","A360T","M377I","I452Q","V466I"],"gp120"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E11D, S24N, I31V, K34R, D286E; RT-p51: K20R, S123N, I135T, E138A, S162W, D177E, V179I, E248D, K263R, Q278N, K281R, A360T, M377I; RT-p66: K20R, S123N, I135T, E138A, S162W, V179I, E248D, K263R, Q278N, K281R, A360T, M377I, I452Q, V466I; gp120: V2G, -5N, L6M, M56L, V57A, E59K, N60E, N102D, -105K, -106V, -107N, N108V, -109S, T110A, -112Q, N114S, -115S, -122E, -123Y, -124E, V133M, K141Q, K142E, E144V, Y145H, P155N, D157G, N159S, N160S, -161N, I187L, E240G, E241D, A253V, V267N, S278G, V279I, R280G, D294A, K307E, -308Y, V317I, K332E, G361N, S365R, -367F, -368N, N369G, -370T, T371N, -372W, -373I, P409S, N414S, T416V, K418N, N434G, E436D, D449N, E472D; gp41: F8L, S42N, I72L, K77Q, I84L, N96S, S101I, S102T, S107T, Q108K, D109Q, E110D, N129D, K144R, N156K, N160S, T165S, N212T, P213Q, R231N, D232N, A243P, A245I, S256C, V271A, D305N, I307T, A310V, V321L, I322V, R330I, N331H, F340V, A342V, Q345L; nef: I10V, P14S, I20M, S50H, V74A, E108D, N116H, V133T, R151Q, E155R, M173I, D177E, K184Q, S188M, L198Q, F202W; p17: R20K, Q28S, R30K, G49S, S54K, E55D, K58R, K62Q, Q69K, H89L, E90A, K91E, A119K, D121A, K122D; p2: -10I, -11N, -12V, I13-; p24: A14V, Q50T, V91I, R203K; p6: A25V; p7: R3K; pro: E35D, N37D, K45R; rev: S8D, A11R, R17K, K30N, R50Q, S56G, S61A, C63Y, A68T, Q74L, S92P, A114V; tat: V4I, N7K, Y26F, K29S, S31C, Q54R, S57K, A58T, P68L, T77P, D80N; vif: M16R, V31I, H48N, K50R, V51I, R92K, D117E, K122Q, S130R, I159R, K176E, R181K; vpr: Q3R, T19A, I60L, S94N; vpu: R35K, I43V, S65A, A79-, N80-, L82I"}}},{"name":"MT194138","node_attrs":{"div":0.14327,"accession":"MT194138","clade_membership":{"value":"C"},"country":{"value":"ZM"},"date":{"value":2011.0},"Strain_name":{"value":"ZM1044M_16Aug2011_1A_23_N"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["C152T","T155G","G224A","T263A","-281C","A354G","A356G","A362G","G367A","A369C","T377A","C379G","A399C","C419A","A516C","A518G","A519G","A521C","C525A","A530T","C537A","G554A","C575T","A638G","G651A","G654A","A655G","A656G","T666A","A674G","G683A","-705A","-706A","-707T","-708A","-709C","-710C","-711A","-712G","-713T","A714-","A715-","G716-","G717-","T718-","C719-","A720-","G721-","T722-","G740A","G771C","A776G","G821A","C823G","G829A","C876T","A881G","A1089G","T1091C","T1103C","C1137T","T1143C","C1175T","A1192G","C1229T","G1271A","G1301A","C1304T","C1330A","A1367G","A1418G","T1421A","A1433C","C1439T","C1444T","A1450G","-1458A","-1459A","A1464C","T1484C","C1492A","A1500G","T1501C","T1505G","C1541T","G1552A","G1568A","C1610T","A1691G","G1697A","C1706A","T1722C","C1749T","C1751T","A1781G","T1797G","G1819A","T1832A","G1852A","G1861A","T1868C","G1972A","T1978G","C1979G","A1981C","C1985A","T1986C","A2018G","A2029G","A2059G","C2071A","G2221A","A2371G","T2449G","A2455G","A2462G","T2542A","C2589T","C2605A","C2615A","T2644C","T2654C","G2682A","G2683T","A2699G","C2720T","T2737C","C2806T","G2925A","A2929T","G2947A","A2992T","G3016A","A3070G","T3118C","C3121T","G3154A","A3224C","A3283C","G3324A","G3325C","G3379A","A3395C","A3397G","C3399A","C3405T","A3421G","A3449G","A3491G","G3494A","T3497A","A3535G","T3541C","A3565G","C3567T","A3571G","A3583G","A3601C","G3643A","A3646G","G3684A","C3763T","T3778C","A3817G","G3825A","A3901G","C3940T","T3943C","T3946C","A3989G","G4036A","A4066C","A4076C","C4079T","G4092C","G4103A","C4210T","A4225G","A4267G","T4276G","C4381T","A4420G","T4674C","G4677C","T4678G","T4679G","A4683G","A4688G","A4692C","T4702A","A4717T","G4723C","C4757T","T4769A","A4817G","T4820G","G4829A","T4857C","A4901G","T4967C","G4975C","C4976T","C5006T","T5018A","G5045A","A5058C","A5090G","G5131A","C5149T","A5150C","T5152G","G5188A","C5221T","A5248C","G5269A","T5293A","C5342T","T5439C","T5442C","A5444C","A5446G","C5463A","C5495A","C5579A","A5614G","-5620C","C5621A","-5626T","G5632A","T5684C","A5703G","T5705G","G5707T","A5716C","G5717A","A5718T","A5720G","G5725A","G5730T","G5781T","T5787A","A5788T","G5791T","A5793C","G5794A","-5801T","-5802G","-5803G","-5804A","-5805T","-5809G","-5810G","-5811G","G5812-","T5813-","G5814-","G5815-","A5816-","T5817-","A5818-","T5819-","G5820-","G5821-","G5822C","C5824T","-5827T","-5828A","-5829G","A5830G","G5831C","C5833T","T5834C","T5836-","T5837-","T5843C","G5866C","C5884A","T5887C","A5918G","G5965C","G5972A","A5995G","A6030G","C6097T","A6124C","T6166A","-6169T","-6172C","A6176-","A6177-","T6178-","G6179-","A6182G","T6184A","-6186A","T6189C","C6190T","A6192C","T6193A","A6197-","T6199-","-6205G","-6206T","-6207A","-6208A","-6209A","-6210T","-6211G","-6212T","-6213A","-6214A","-6215C","-6216T","-6217G","-6225C","-6226T","A6234G","A6235G","A6285C","A6287T","A6304G","C6320A","T6325G","A6329G","T6331G","A6338G","-6340G","G6345T","A6346G","T6365A","G6368A","C6370T","A6371G","T6395A","T6436G","A6471G","C6477A","T6598C","C6613T","A6640G","A6649G","T6658C","A6682G","A6734G","T6735A","G6743A","T6769C","A6774G","A6777G","A6781T","A6786C","A6789G","A6790G","T6794C","A6819G","G6821A","A6840G","A6848C","T6853C","A6856G","C6857T","C6888T","A6889G","G6906A","A6935T","A6936C","-6956T","-6957T","A6962G","-6967A","G6969A","-6973G","-6974A","-6975A","-6976T","-6977G","-6978C","-6979T","-6980A","-6981C","-6982A","-6983A","-6986G","-6988T","-6992T","-6993C","-6994A","A7021G","G7026A","A7040G","A7056G","G7065A","A7129C","G7152C","-7153A","A7154G","T7156A","A7161G","-7162C","A7169G","C7170T","T7222C","T7228C","A7256G","C7264T","T7267C","G7268T","A7269C","G7271T","A7275G","G7366A","G7369A","C7393T","C7429T","G7502A","A7519C","C7595T","C7596A","C7603T","A7604G","T7606A","T7618C","C7623G","C7625T","A7627T","G7628A","T7633A","T7636C","A7689C","A7722C","A7735T","T7747C","G7764A","T7765A","G7777A","C7792T","T7801G","G7835A","C7874A","C7876A","T7879C","G7918A","T7921C","A7953G","C8005G","C8103T","A8104G","G8105A","G8144A","C8145T","C8183T","A8185G","A8191G","A8204G","A8207G","G8208A","C8238G","G8261-","A8262-","A8263-","T8264-","T8265-","A8266-","G8267-","T8268-","A8269-","C8270-","A8271-","A8272-","A8273-","G8274-","A8275-","A8276-","T8277-","T8278-","T8279-","G8280-","T8281-","A8288T","C8296T","T8298G","C8300-","T8302A","G8304T","A8309C","T8310A","A8311G","A8312G","C8320A","G8324A","A8325C","G8412-","A8413-","G8414-","A8417T","G8418C","G8427A","C8437A","A8438G","A8446G","A8458G","T8462G","T8470C","C8488A","G8490A","T8511A","G8513A","T8515C","G8516A","C8521T","A8534T","G8537A","T8558A","C8590G","C8651T","C8666A","C8684G","C8705T","T8766C","G8767T","T8770A","C8775T","T8832C","T8843C","A8851T","A8886C","C8911G","-8970G","-8971A","-8972C","-8973T"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S17N, I72V, I101L, G106A, V110I, D167E; RT-p51: S123G, T165I, Q174K, G196D, I202V, R277K, Q278H, M377L, E396D, W410Y, I434L, A435E, A437V; RT-p66: S123G, T165I, Q174K, E177D, G196D, I202V, R277K, Q278H, M377L, E396D, W410Y, I434L, A435E, A437V, I452V, V467I, S468T, S491L, R530K; gp120: T22A, V40I, E59G, N108-, T110-, -112V, N114A, -124A, K127R, L137V, E144A, L156I, D157E, N159G, N160T, -161S, S162E, R164M, S171T, A172T, I173V, S181T, N206S, T208K, D294E, D297N, K307R, -308S, K309N, N311T, E312R, K319E, K322R, E323K, -328R, K329-, K332Q, P335S, T345M, R351K, G361S, -368F, -370G, -372Y, -373M, -381T, -382D, -383N, -384S, -385T, R391K, I396V, E401G, R404Q, S433T, N434E, E436G, T439V, I468V, E472S, A473S, K474R; gp41: A67T, P98Y, S101E, Q108Y, D109N, N129T, N140T, K144N, S154K, N166K, V178I, L191I, E215G, D217G, N239S, A267V, A268T, A281I, I301V, S302D, A312G, E320R, V321A, I322F, Q323C, R324N, I325R, P333-; nef: E24P, A27E, E28-, G29R, A32E, Q35R, K39R, H40Q, L43P, A49D, W57R, L58P, A60V, A83G, C142L, F143Y, Q170L, K182Q, A190G; p17: I7V, G11E, K12Q, D14E, K15R, I61L, K62D, L64I, Q65H, L68I, E106K, E107R, C111S, A119E, K124N, -125T, V128-; p2: A7V, N8-, -10S, -11T, -12N, M14L; p24: A14P, A31G, S33N, P49S, S120G, K154R, T200N, T210S; p6: F15L, P24S, S40A, S47N; p7: P9H, I12A, R29K; pro: S12T, Q61D, L63T, T74A; rev: L22I, H53D, S86D, S99N, S112F, R113G, K115E; tat: N23T, K24E, T40K, P68H, T82A; vif: Y30H, V31R, R33G, K36Q, F39Y, Y44F, S46T, D61E, D78E, S130T, K158Q, G182D, T188I, M189R; vpr: N16Q, E48D; vpu: -2Q, -3A, L4R, -5V, -6R, V7L, V10G, V26A, L33W, V34L, R37H, K38R, D40N, W41C, E58D, T61V, V69-, D70-, M71-, G72-, L77-"}}}]}]}]}]},{"name":"C_NODE_0000009","node_attrs":{"div":0.08019,"clade_membership":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["-281C","C773T","G5257A","T5355A","C5461T","-5600T","-5601A","-5620C","T5728A","C6562T","T6778G","G7366A","G7790A","G7918A","G8152A","C8406A","G8414T"],"gp120":["N160S","-308K","-370S"],"gp41":["D163N"],"p2":["-11N"],"rev":["V102I"],"vif":["V51I"],"vpu":["W41R"]},"labels":{"aa":"gp120: N160S, -308K, -370S; gp41: D163N; p2: -11N; rev: V102I; vif: V51I; vpu: 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A124S, G134D, V165I, D167E, I218T, R269K; RT-p51: T48S, A98S, K102Q, V118L, A173T, E177D, K211R, T215S, T216R, K219Q, H221Q, K249R, D250E, I257L, L264I, C280G, V293I, L310I, A371V, A376V, T386A, K431T; RT-p66: T48S, A98S, K102Q, V118L, A173T, E177D, K211R, T215S, T216R, K219Q, H221Q, K249R, D250E, I257L, L264I, C280G, V293I, L310I, A371V, A376V, T386A, K431T, L469I, L517I; gp120: M3G, K18R, A32G, D50N, N52D, E59G, I80V, S87G, N102T, T104I, -109A, -111I, -112F, -114G, -115S, -122E, -123I, -124D, M126A, N132S, T133M, T135A, L137V, K140S, K141T, K142I, K143N, Y145S, A146S, L147V, F148Y, S160K, N161T, A172T, I173V, I185F, I243V, E247K, T255I, N261K, E262K, V267I, T269I, P271T, N272G, H302Y, S306N, K307E, D309T, K312D, R316E, S318A, K322H, -328S, K329T, T330N, K332R, N334A, S336P, N358D, K361N, S365M, -368L, N369F, S370N, T371D, -372W, -373S, -374Y, -375E, -376H, -377S, -380T, -381D, -382S, -383D, -384F, -385I, T387M, L388I, P389R, K393T, Q394H, E401V, G403R, R404A, A405V, M406L, P410A, 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N80P"}}},{"name":"MF373131","node_attrs":{"div":0.1612,"accession":"MF373131","clade_membership":{"value":"C"},"country":{"value":"SE"},"date":{"value":2005.0},"Strain_name":{"value":"010BI"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["A359T","G363A","C365G","A378C","C379A","G394A","C419T","G480A","T495G","A500T","A516T","A519C","C540A","G542T","C575T","T602C","G603A","A604G","A605G","G615A","C618A","C641T","G671A","A677G","-700A","-714A","C749A","C774T","G818A","G821A","C875T","T884C","T978A","G987T","T988C","A989T","T992G","G1019A","A1025C","T1058C","A1070G","G1077C","C1078A","C1115A","C1118T","A1263T","G1313A","-1452C","-1459A","C1598T","T1646C","C1656A","G1664A","A1725C","-1729T","-1730C","-1731G","-1732G","-1733G","-1734G","T1735A","C1736G","G1737-","A1738-","G1739-","G1740-","A1741-","G1742-","A1746C","C1751T","C1756T","C1761A","C1767A","C1795T","T1853C","T1854A","G1912A","T1987C","A2063C","A2242G","C2266T","C2296T","A2368G","A2398G","G2459C","A2460C","C2464T","C2528T","A2529G","A2530C","C2596T","C2615A","A2734G","T2737C","A2929G","C2975G","C2976T","A2977G","T3002C","C3023T","T3100C","A3103G","C3140T","A3151G","G3154A","A3192G","A3230T","T3253C","C3274T","A3293T","T3346A","G3379A","G3398A","C3399T","C3415T","G3431T","G3439A","T3469A","G3491A","G3523A","A3583G","G3631A","A3675G","A3718G","C3773T","A3816G","G3846A","G3859A","A3880G","T3904C","T3924C","A4060G","A4076C","C4079T","T4276A","A4397T","A4420C","A4427C","T4441A","A4525G","G4561A","T4606C","G4607A","A4625G","C4645A","C4665T","G4695A","G4696A","T4701C","T4703G","A4721T","T4769A","T4800C","G4861A","G4864A","G4870A","A4952G","T4967C","T4976C","A4993C","T5006C","A5026T","T5062A","A5090G","A5173G","C5251A","C5268G","A5275G","A5282C","T5293G","A5302G","C5306A","A5324G","C5358T","G5359T","A5360G","A5453T","T5457C","A5461G","A5462T","G5563A","A5564C","C5579T","T5584C","T5600C","-5602T","T5604G","T5616A","T5618C","A5623T","G5624T","A5644T","G5662A","A5689T","A5728C","G5748A","C5763T","G5775A","-5803A","-5805C","T5843C","C5949G","G5956T","T6024G","T6025C","A6044T","T6076G","A6092G","T6101A","A6113G","A6119C","G6165C","T6166A","-6167A","-6168A","-6169T","-6170G","-6171T","-6172G","-6174C","G6179A","-6180A","T6181G","T6193C","T6196G","-6198C","-6201G","-6204G","-6205G","-6207G","-6209T","-6210C","-6211G","-6212A","-6213G","-6214G","-6215A","-6216T","-6217G","-6219T","-6220G","-6222C","-6223G","-6225G","-6226A","G6232A","A6262G","A6311G","A6330G","G6336A","C6337T","A6339G","T6340C","A6456C","T6457A","A6461G","C6469T","C6487T","C6489A","G6561A","A6568G","G6569C","C6599T","A6602G","A6615T","A6620C","G6638A","T6643A","A6648G","A6669C","A6672G","T6673A","A6683G","C6721T","T6722G","A6723C","T6724C","G6725A","C6729G","G6732A","A6781T","A6785C","T6787G","A6788G","T6793C","T6794C","G6802T","A6805C","G6807A","G6821A","A6822C","-6830G","-6831G","T6835A","A6840T","A6845-","T6846-","A6847-","A6848-","A6850-","A6856C","A6859T","C6895T","T6898C","A6935C","A6947G","C6951T","-6952T","-6953T","-6954T","-6955T","-6956A","-6957A","A6959G","G6963C","T6964A","-6967T","-6968A","-6969A","-6970T","-6972A","-6973T","-6974A","-6975C","-6976T","T7011G","C7016A","C7018T","A7021C","G7026C","A7027T","A7031T","A7033C","C7034A","A7035G","A7036G","T7039A","A7042G","A7043G","G7048A","T7049A","G7054A","G7058A","A7060G","G7061T","A7063G","G7065C","A7070C","T7071C","C7078A","C7082A","C7083T","C7084G","A7090C","G7091C","A7093C","A7095C","A7099T","T7103A","T7105A","A7107C","A7108G","A7113C","T7114A","G7121A","A7126T","A7129T","G7132A","C7134G","A7135G","C7136A","G7137A","T7141G","G7142A","G7143C","A7147T","A7151-","A7154G","T7156G","-7162G","G7168C","C7170T","T7173G","C7174A","G7176C","A7183C","G7184A","G7188A","A7189C","G7190A","T7194G","G7198A","G7199A","C7201T","A7210G","G7212A","T7213A","A7216T","T7220C","T7222G","A7223G","A7224C","A7229G","T7236C","G7238T","A7239C","A7241C","A7244G","A7245G","C7247G","T7250A","G7253A","G7254C","A7261G","C7264G","C7266A","T7267G","A7269G","G7270A","C7272A","A7273T","A7276G","G7279A","G7281C","T7287-","G7288-","G7289-","G7293A","A7296C","A7298G","A7301G","-7307C","G7309A","A7312C","A7315T","G7316C","G7324T","T7325C","T7329G","G7332C","G7333A","T7337G","G7340A","G7343C","C7344T","A7345T","G7346C","A7351G","T7403C","C7436G","T7462C","C7574T","C7579G","G7589A","C7590A","C7625T","A7627C","G7628A","G7657A","T7666A","G7668A","A7672G","A7732G","A7742C","C7771A","A7796G","T7801C","T7852A","T7888C","G7890A","A7937C","C7940T","A7992G","A8006G","T8008G","G8019A","G8032A","C8065T","A8076G","C8080A","C8103T","G8131C","G8137T","T8176C","G8181T","C8183T","A8242G","G8254A","G8267C","A8284G","G8292T","A8297G","A8309G","T8323G","G8330T","A8337T","G8348A","G8398A","G8421A","A8426C","G8427A","A8446G","C8489A","C8491G","A8522G","A8537G","T8558C","G8561A","T8567C","A8584T","C8597T","A8636T","G8654A","A8655G","A8656G","T8676C","G8739A","T8740C","T8745C","A8746T","T8747C","G8794C","C8809A","C8810G","G8814A","G8875A","T8903C","C8915T","C8921T","A8922C","G8924T",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K14R, S24N, M50T, I101L, D167E, I208L, N222K, A278T, R284G; RT-p51: E122P, Q145C, P294V, R358K, K366R, S379C, T400S, A435I; RT-p66: E122P, Q145C, P294V, R358K, K366R, S379C, T400S, A435I, A446S, V466I, N527S; gp120: A32G, E34D, L56I, V57G, N64Y, I80V, L83I, S87G, K89Q, -105N, -106V, -107T, -109K, -111N, -112T, -114K, -115T, -122M, -123T, -124G, M126I, T133I, L137I, I153V, S162D, N201T, K203E, T212N, S236N, E239Q, T250A, K254I, I256L, E262K, E265G, N272T, N273R, K277E, K307R, N311Q, K312E, R316N, S318K, K322E, E323T, N327G, T330N, K332T, P335H, K361Q, N366D, -368F, S370D, -372T, -378N, -379N, -380T, -385T, I386S, L388I, R391T, K393Y, Q394R, I396M, N397D, M398I, W399R, V402M, G403W, R404P, M406P, P410M, G413R, N414T, C417R, K418T, S420T, G423S, T427R, R428N, D429E, G430T, -433E, N435E, E436T, G444R, G445D, D446N, M447R, D449N, S453K, E454D, Y456Q, K457A, K459E, V461A, E462S, I463L, K464G, P465A, L466I, G467T, T471K, K472R, A473D, R476T, V478E, E479K, R480A, K482G; gp41: V2L, G5R, F8L, L9R, G10A, L12V, G13R, A14L, A15P, L45V, L91F, I92M, A96N, Q108Y, D109N, M118I, R122K, K147Q, T165A, R196K, N212H, P213S, D230G, I235V, H258R, A267V, G293V, V322L, R324G, R330L, I332V, I336V, A343S, Q345L; nef: R19K, E24D, A27T, E28D, G29R, Q35R, A50G, Y81F, E98D, K105G, V133T, Y135L, R151T, A156E, E158K, R178K, M194L; p1: H9N; p17: L8F, G10R, T15H, R20K, G49S, S54A, I61L, K62Q, Q69N, E90R, V94I; p2: -10P; p24: L83I, V86S, H87Q, M96I, E98D, A116Q, D128E, T178S; p6: P11L, A12E, -18G, -19E, E20-, E21-, T23P, P26L, Q28K, Q30K, T39I; pro: L19Q, L63P, M89L; rev: K30T, P31L, H53R, S54A, L73F, L78I, E95Q, V97L, S99N, S106P, S112F; tat: Y26F, K29V, E63T, S70P, Q76H; vif: V7A, T20K, H27Y, G37K, F39L, E45D, R92K, R93K, S95N, Q136P, Y147F, R159K, R167S; vpr: T55R, I60L, I63M, L68M, R85L; vpu: L4-, A8-, A19T, I28L, V79A, 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p24: I15L, L83V, V86P, H87Q, E98D, D128E, D180E, V191I, R203K, T210S; p6: S3N, A25T, S30A, R33K, -35P, -36Y, K42R, S51L; p7: V13I, R29K, K41E, E51G; pro: S12T, K14T, V15I, I36M, N37S, Q61H, L63P, I64L; rev: I21T, P67S, A68E, Q95E; tat: L8I, K24N, K29C, T40R, I69V, P81Q, S84P; vif: V31I, R34K, R63K, H73Q, P131H, R167Q, D172N; vpr: N41D, L60I, Q77H, A89S, A93P; vpu: -3K, -5L, -6A, A8G, R37K, K38R, K44N, E56D, 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E25D, F100Y; RT-p51: I434M; RT-p66: I434M, V466I, T477A; gp120: A32T, M56I, E125-, M126-, K127-, N167S, K308R, H324L, -368N, -385T, S453N; gp41: F8L, Q108K, N156D, G221R, A267V, I325F; nef: F85V, F89W, S188H; p17: R43K; p6: A12I; pro: S12T; rev: E10A, R50K, K105Q; tat: P21A; vif: I51L, R167S; vpr: T19A, T55M; vpu: S65L"}},"children":[{"name":"KU319542","node_attrs":{"div":0.14418,"accession":"KU319542","clade_membership":{"value":"C"},"country":{"value":"ET"},"date":{"value":2008.0},"Strain_name":{"value":"ET148"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["A353G","A354G","T355C","A362G","G363A","A369-","A370-","A371-","C379T","A380G","A388G","A410G","C434T","A500T","A520G","A530C","T587C","G612A","G614T","C641T","A666T","A682C","G686A","G695A","T698G","-700A","C701A","-705G","-706C","-707A","T731C","G771T","A774C","T788C","C845T","C872A","A968G","T978A","T983C","G1002A","C1078A","A1079T","T1091C","T1103C","C1115A","C1118T","C1169T","A1217G","G1313A","T1322C","C1331T","A1359T","T1421G","-1455A","-1456A","-1457T","C1460-","A1487G","G1489C","C1492T","T1493A","A1495G","A1497G","G1498A","A1499G","T1511C","C1523A","G1543A","T1547C","C1598T","A1642G","C1656T","A1657G","G1742A","C1750T","G1852A","A2059G","A2131G","T2171C","G2173A","C2199A","C2202A","C2281T","G2293A","C2326T","C2353T","T2365A","A2380C","C2467T","A2473G","C2615A","C2635T","T2644C","C2694A","A2698G","A2699G","C2720T","A2727G","A2773G","G2837A","A2839C","A2920G","A2938G","C2960T","G2972A","A3043G","T3045C","C3095A","A3145G","A3224C","T3225A","T3343C","A3367G","C3380T","A3449G","T3450C","A3481G","T3496G","G3523A","T3530C","G3544A","A3565G","A3651G","G3685A","G3686A","C3688T","A3715G","C3779T","A3787G","A3794C","T3829C","A3931G","T3967C","A3985G","A3989G","C4021A","G4036A","C4058T","A4059C","C4123T","C4141T","T4153G","T4224C","T4428C","A4498G","T4537C","C4667T","T4769A","A4817G","G4887A","G4932A","C4937A","T4973C","C4988T","A5051G","A5059G","C5182T","G5185A","A5247C","T5282C","A5284G","T5292C","T5314A","A5336G","A5355T","G5357A","G5359A","T5424C","A5433C","A5447C","A5467T","C5469T","C5479G","T5483C","C5491T","A5492C","C5513G","T5568C","A5581G","C5599G","-5602A","T5611G","G5630C","C5678T","G5700A","A5720G","G5734A","T5736C","A5742G","C5763T","A5792G","-5800A","-5802C","-5805C","-5807A","G5808T","-5809G","-5810G","-5811G","T5836C","A5867G","C5884G","A5907G","A5918G","T5920C","A5921C","C5974T","A6008G","T6024C","G6029A","A6045G","G6073A","A6118G","G6165A","A6173-","G6179T","C6183A","G6188A","A6197G","-6201A","-6204C","-6205A","-6210T","T6211A","A6212C","-6216C","-6220A","-6221C","A6222T","T6223A","G6224A","-6225G","-6226A","A6234C","A6236C","-6238G","A6263T","A6265G","A6282C","A6283T","G6303A","A6311G","A6327G","-6340T","G6346A","C6394T","C6446T","A6488G","T6490A","G6526A","G6532A","A6544G","G6572-","A6573-","A6574-","T6586C","G6588A","A6649T","G6694A","G6743A","C6752G","A6773G","C6790T","A6806G","C6818A","A6848G","A6849C","A6907G","T6932A","G6947A","-6967A","-6968A","-6969A","-6970C","-6972G","-6973T","-6977T","-6978C","-6979A","-6981A","-6982T","-6983T","C7016A","T7018C","G7056A","A7108C","A7113C","C7117T","C7124A","G7132A","A7152T","A7155C","T7159C","G7166A","A7175T","G7176T","G7197T","G7199A","G7212A","A7225T","T7242A","G7246A","A7261T","C7264T","A7269G","G7270T","A7276G","G7293A","G7295A","G7307A","T7323C","G7333T","G7339A","G7340C","A7373T","A7396G","G7459A","G7502A","C7561A","C7574A","C7596T","T7604A","T7633A","T7642A","G7712A","A7713T","A7733G","G7760A","G7764A","T7765G","A7781T","A7782C","A7790G","A7799C","A7818G","T7894C","A7938G","G7962A","C7969A","G7995A","C8047T","G8079A","A8104G","C8106G","G8158A","G8163A","T8203C","C8213T","A8242G","T8268C","T8279G","C8286G","C8291A","C8293G","C8296T","A8338G","A8342T","A8364T","-8365C","-8367A","-8368G","-8370A","-8372A","-8373G","-8374T","A8378G","G8404A","A8405G","G8458A","G8476C","A8486C","G8490A","C8503A","A8525G","G8529C","G8554A","G8588A","A8653G","C8669T","T8685C","G8729A","A8792C","G8794A","G8888A","A8909G","C8921T"],"INT":["K7Q","I72V","Q95S","V150A","I218T"],"RT-p51":["T35K","A36E","Q174K","A200E","I202V","K211R","E248N","V293I","V317A","H334N","M377Q","E413D"],"RT-p66":["T35K","A36E","Q174K","A200E","I202V","K211R","E248N","V293I","V317A","H334N","M377Q","E413D","I452A","N519S","V531I","S554N"],"gp120":["N5D","K18R","T22A","T23P","N52D","V57A","E59K","N64S","S104N","-105D","-106T","-107Y","-109T","-111N","K143T","R150K","I153V","L156-","D157-","N158-","N159-","S160-","Y163-","R164-","I166N","N212E","E241I","I242V","I243-","R245K","E265D","D297N","Q300E","K307E","S318G","K323E","K332A","S360T","G365S","-373S","-374T","-375S","-376N","-377S","L388I","G401E","K418N","N420T","L424I","T432N","-433I","N434T","N436D","E438K","R441L","R448M","D449N","K457N","I463N","E472S","R480K","E481K"],"gp41":["V2I","V7A","G13R","V24L","A67T","L91I","P98L","S101T","D109E","D113E","D137I","K144E","D153N","S154K","N160S","N163D","N166H","K172R","N212S","G220E","R231K","D232N","R259Q","A268G","R277S","S287N","L304F","V322A","C326G","A328G"],"nef":["-11V","R21K","Q35R","S45T","A50T","A54D","E63Q","R71K","K104R","Y115H","R151K","R182K"],"p1":["K4R","H9C"],"p17":["I7A","G10S","K12-","T15M","K18R","E55D","K62R","Q65H","E93N","S111C","Q116P","A119K","K122E","K124A"],"p24":["A14S","I15L","L83I","V91I","A116N","D1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K7Q, I72V, Q95S, V150A, I218T; RT-p51: T35K, A36E, Q174K, A200E, I202V, K211R, E248N, V293I, V317A, H334N, M377Q, E413D; RT-p66: T35K, A36E, Q174K, A200E, I202V, K211R, E248N, V293I, V317A, H334N, M377Q, E413D, I452A, N519S, V531I, S554N; gp120: N5D, K18R, T22A, T23P, N52D, V57A, E59K, N64S, S104N, -105D, -106T, -107Y, -109T, -111N, K143T, R150K, I153V, L156-, D157-, N158-, N159-, S160-, Y163-, R164-, I166N, N212E, E241I, I242V, I243-, R245K, E265D, D297N, Q300E, K307E, S318G, K323E, K332A, S360T, G365S, -373S, -374T, -375S, -376N, -377S, L388I, G401E, K418N, N420T, L424I, T432N, -433I, N434T, N436D, E438K, R441L, R448M, D449N, K457N, I463N, E472S, R480K, E481K; gp41: V2I, V7A, G13R, V24L, A67T, L91I, P98L, S101T, D109E, D113E, D137I, K144E, D153N, S154K, N160S, N163D, N166H, K172R, N212S, G220E, R231K, D232N, R259Q, A268G, R277S, S287N, L304F, V322A, C326G, A328G; nef: -11V, R21K, Q35R, S45T, A50T, A54D, E63Q, R71K, K104R, Y115H, R151K, R182K; p1: K4R, H9C; p17: I7A, G10S, K12-, T15M, 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N163Y, I164F, W169R, K172M, I173L, V178I, V190E, L191I, V194T, R196K, V197I, R198M, P203T, L204I, N212T, R218G, L219I, G220V, I222V, G226D, E228D, D232S, R233S, S234W, I235M, F241I, L249I, R250L, L252M, S256I, F263V, I266V, V267I, A270T, L273V, G278S, W279R, G293A, L303I, L304I, T306A, I307L, A310T, A328T, R330L; nef: G3N, S9-, I10-, G12-, P14R, E18D, T23S, Q35*, K39R, L43I, A53E, A60E, E98D, L100I, V114M, F120Y, N126C, R151G, N157T, M168I, S169N, E174D, K184Q, E197D, F202Y; p17: R9S, G11-, K12E, T15A, G49D, S54A, Q59R, I61L, Q69P, Y79F, E90K, N109K, K110E, A119T, K122G, K124N; p2: T10N, N11A, -12H; p24: S33N, V36I, V86A, H87Q, M96I, A116T, D187E; p6: I12M, R16K, L38S, K42R; p7: I12T, V13I, I24L, T50N; pro: G16E, I19T, L63S, M89L; rev: S8N, Q14R, I21L, Y28H, K30H, Q36R, A37H, N40S, A47S, I52L, H53D, S54A, E57K, I59N, T62A, P67H, A68P, P70H, P72S, Q74H, R80G, L81R, D84G, C85D, S88D, T91G, T94A, G96E, V97*, G104W, S106P, S112F, A114V, K115E; tat: K19R, A21D, Y26H, K29V, Q39R, T40P, A58P, 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E10A, K14R, S17N, Q136R, I201V, I220L, I268L, K269R; RT-p51: V8I, K101R, H121Y, K166R, A173T, K174Q, E207R, K211R, D250E, A286T, P294S, V317A, P345Q, F346Y, T359A, V365I, M377I, A435I; RT-p66: V8I, K101R, H121Y, K166R, A173T, K174Q, E207R, K211R, D250E, A286T, P294S, V317A, P345Q, F346Y, T359A, V365I, M377I, A435I, L452I, Y483S, S491P, K527G, E529K, V548I, S554N; gp120: G4S, E34D, V57P, N64E, V80I, E102K, C103-, T104-, N108-, T110-, I126M, E136V, I137V, R138E, K140R, Y145H, Y163E, R164K, A191T, N202D, K203N, N212H, K277T, D294E, K307E, -308A, K319E, K332N, S365G, -368M, -370G, -372N, -373S, I388L, I395F, E401G, A412E, K418N, N420I, T427E, N432E, -433T, N435S, E436S, I439T, D449N, K457R, A472T; gp41: A1V, V28A, A50V, K77T, K106I, D109E, E110D, D113N, Q119E, E123Q, D129G, N156K, N160S, L191I, S192A, P216L, R231K, D232T, E272G, S287N, E320I, R324G, R330C; nef: A15N, S45T, A56T, Y81F, E98D, K104R, H116N, V133T, Y135L, C163S, M168L, E174D, E176D, V180I, K182Q, M194L, Y202F; p17: G11K, K18R, K26R, H28R, M30R, T72S, R95Q, K114R, K119-, G123-, -127Q, Y132F; p2: A7-, N8T, -10S, -12T, M14L; p24: I2L, L15I, M96I, S120N, D128E, K154R; p6: S3N, P26L, S47N; p7: R29K; pro: V15I, I36L, N37D, K41R; rev: E10D, A11D, Q14R, E30K, R50N, R80G, G89S, S103P; tat: N24T, Y26H, H29I, S46Y, S57R, A58P, L68P, S70P, R76Q, P81S; vif: R34K, K36N, F39V, E45D, L91M, R93G, S95N, D134E, T151I, K157E, I159R, V166I, N176K, K179R, T180I, G182D, R183H, N186S; vpr: P4A, T49N, I70T; vpu: I2L, S3E, L4I, V26A, R35Q, T61S, H73S, N80I, 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S94R"}}},{"name":"FJ496209","node_attrs":{"div":0.15899999999999997,"accession":"FJ496209","clade_membership":{"value":"C"},"country":{"value":"ZM"},"date":{"value":2003.0},"Strain_name":{"value":"ZM249M_flC1"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["C152-","G157A","T159G","-160T","T200C","G216A","A354G","A362C","T377C","A378T","A393C","C417A","T419A","T424G","C435A","C456A","G481A","C482G","A492T","A507C","A508T","A509G","A515T","A516C","C525A","C537A","G554A","G562A","C572T","C575T","A603C","A605G","G606A","G615A","C618A","C623T","G654A","A655T","C672A","A678G","-695T","C697A","-699C","-701A","G740A","C767T","T771C","G791A","G815A","T827C","A869T","A932G","G956A","T1003A","A1022G","A1025G","A1079C","G1109A","T1136C","G1139A","G1142A","T1172A","A1192G","G1199A","G1205A","C1229T","C1230A","T1271G","C1304T","A1367G","A1404G","A1418G","C1444T","A1464C","A1503G","C1517T","C1535T","G1568A","C1656A","G1673A","C1679T","T1682C","C1755T","G1852A","T1986G","A2023G","T2035C","C2087T","G2117A","C2149G","G2210A","A2211G","A2227G","A2242G","T2257C","T2263C","G2293A","T2353C","A2419G","G2422A","G2462A","T2533C","G2548A","C2575T","A2593G","A2611G","C2615A","T2668A","T2719C","A2727G","G2728A","G2752A","A2755G","A2764G","A2773G","T2791C","C2831T","G2837A","T2845G","G2914A","G2925A","T2932G","C2953T","A3020G","T3068C","T3097G","C3100T","C3133T","A3148G","A3202T","A3208G","A3229G","G3334A","T3346C","G3398T","C3399T","T3497G","A3529G","C3545A","C3577T","A3667G","G3756A","C3763T","G3766A","C3826T","T3856C","A3871G","G3896A","C4024T","C4072T","A4189G","A4264G","T4381C","A4495G","G4549A","C4569T","T4799G","A4865G","C4883T","T4910C","G4981A","A5021G","C5027T","T5028C","G5030A","C5114A","A5155G","A5159G","G5246A","A5248C","G5257A","T5275C","C5303T","C5333T","T5354C","T5355C","A5366G","G5370A","C5393A","C5397T","G5403C","A5446C","C5547T","G5548A","C5579T","A5615G","T5616C","G5643A","A5655G","T5684C","G5707T","T5789C","A5806C","G5822A","T5836C","T5850A","G5858-","T5859-","G5860-","T5862-","G5863-","C5884T","T5920C","G6023A","C6067T","G6165A","A6166T","A6167-","A6168-","T6169-","A6173-","-6180T","C6183A","A6185G","T6191C","T6196C","-6201C","-6203T","-6204A","-6205C","-6207A","-6208C","-6209A","-6210A","-6211T","-6212A","-6213C","-6214A","-6218G","-6219A","-6220G","-6221G","-6222G","-6223T","G6227C","C6252T","C6256T","A6262G","G6303A","T6310C","G6314T","A6329G","-6333G","A6338G","-6340G","T6436C","C6477A","C6487T","A6505G","G6519A","T6559C","C6563T","G6572A","A6595G","C6599A","G6601A","C6612T","C6618T","C6632T","A6646G","G6653A","T6654A","G6655C","A6662C","C6670T","A6734G","T6735A","C6745A","C6752G","T6778A","A6798T","A6801G","G6808T","A6819G","A6820G","T6824C","C6829T","A6836G","A6837G","A6842G","A6854G","C6862T","C6895T","A6913G","A6927C","A6934G","-6956A","-6957A","A6959C","A6960C","-6986A","-6988T","-6989G","-6991C","-6993C","-6994A","-6995G","C6996A","-6998A","-7000T","G7002A","A7010C","C7019A","G7026A","A7036G","C7078T","T7081C","C7089A","A7095G","A7108C","A7113C","C7117T","C7124T","A7126G","-7147C","A7149G","T7150C","-7152A","-7153A","T7159C","A7161C","-7162A","A7163G","C7164A","A7183G","G7197A","T7228C","T7243C","T7250C","A7261G","A7315G","C7328T","T7330G","C7429T","T7516C","C7589T","A7621G","A7629C","T7633A","C7645T","C7684T","G7688C","A7720G","A7722G","A7735G","T7751C","C7755A","T7765C","C7825T","C7843G","T7876A","A7903G","T7912A","G7918T","C7926T","T8016C","C8044A","G8055A","C8069T","A8119G","G8126A","G8180A","A8195G","C8210T","T8215G","G8216A","T8277G","A8297G","T8302C","G8304C","C8320T","T8323A","G8327A","C8328G","A8402C","C8440T","A8441G","A8453G","A8458G","A8461T","C8469G","T8471C","C8483T","C8489A","A8494C","T8505G","G8506T","G8513T","C8517G","A8534G","A8537G","C8543A","G8564A","T8568C","G8589T","A8594G","T8595G","T8640C","A8643G","C8666T","C8669T","T8676C","T8711C","G8729A","G8739A","C8741T","A8742C","T8747C","C8751T","A8762G","C8775T","T8786G","C8789T","A8801G","C8813T","A8826T","A8827T","C8828A","T8829A","T8831C","C8835T","A8847T","G8861A","T8867C","G8868A","A8869C","C8873G","C8882G","T8883C","A8885G","A8887T","G8888A","A8904C","G8905A","C8921T","C8934A","T8948C","T9039C","C9040T","A9041G","T9051A","C9078T","A9095T"],"INT":["D41N","A265V"],"RT-p51":["V8I","E39R","D123N","Q174K","K211R","E248K","D250E","I309V","H334Q","A435L"],"RT-p66":["V8I","E39R","D123N","Q174K","K211R","E248K","D250E","R277K","I309V","H334Q","A435L","L452I","S468A","L484I","S554N"],"gp120":["V2G","V3N","G4-","N5-","T104-","-109N","T110V","-111N","-112V","-113T","-114H","-115N","-116S","-117T","-118Y","-119N","-120N","-121T","-122E","-123G","-124E","E125Q","T133I","R150K","V154L","D157N","N159D","N160S","S162E","T208K","G222E","E240K","L249I","A253V","T255I","V267N","D294E","D297K","Q300E","-308E","Q315L","K322R","Y324H","N327G","T330A","N358T","-368N","T371N","-372N","-375E","-385T","I386L","P389T","R391K","A412E","N414S","K418N","N420T","N432S","-433K","R448K"],"gp41":["S101T","Q108K","D109A","K129Q","N140S","A151E","T2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D41N, A265V; RT-p51: V8I, E39R, D123N, Q174K, K211R, E248K, D250E, I309V, H334Q, A435L; RT-p66: V8I, E39R, D123N, Q174K, K211R, E248K, D250E, R277K, I309V, H334Q, A435L, L452I, S468A, L484I, S554N; gp120: V2G, V3N, G4-, N5-, T104-, -109N, T110V, -111N, -112V, -113T, -114H, -115N, -116S, -117T, -118Y, -119N, -120N, -121T, -122E, -123G, -124E, E125Q, T133I, R150K, V154L, D157N, N159D, N160S, S162E, T208K, G222E, E240K, L249I, A253V, T255I, V267N, D294E, D297K, Q300E, -308E, Q315L, K322R, Y324H, N327G, T330A, N358T, -368N, T371N, -372N, -375E, -385T, I386L, P389T, R391K, A412E, N414S, K418N, N420T, N432S, -433K, R448K; gp41: S101T, Q108K, D109A, K129Q, N140S, A151E, T208I, V238A, D247E, S251N, L256F, G275R, G293S, K298E, D305N, A325G, I332V, R334T, F340L, A342R; nef: A33V, K39R, Y40F, L43V, N51T, C55V, W57C, Q59E, A83S, F85V, I101V, Y120F, V133I, N162L, C163S, S169C, M173I, E176T, D177E, K182I, S188H, L198I; p1: H9N; p17: I7V, R9S, T15S, H28K, M30R, L34I, L41M, G49E, T53S, K58L, I61L, L64I, L68I, R76K, K90Q, G91R, V94I, Q95K, E107I, Q113K, T115A, K119E, A121D, E122Q; p2: A7V, M14L; p24: S14P, V91N, K154R, D180E, S225G; p6: P26S; p7: I13V; pro: V63G; rev: A11V, Q74L, T91A, T92A, G93E, E95D, G111E, K116R; tat: P6H, E9D, K24Q, A58T, P73S; vif: K36N, R132K, N176K, N190S; vpr: P4T, T19A, E48N, A89T; vpu: -7S, -8L, -10E, I21V, V26A, V34L, E58D, G72E, 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K34R, V112I, A124N, T206S, I234L, M275V, A278S; RT-p51: T27S, K35I, K103N, D123S, E138K, T139A, A173T, Y181C, I202V, E207D, E248S, I274V, Q278N, K281R, H334N, A360T, M377Q, I434M; RT-p66: T27S, K35I, K103N, D123S, E138K, T139A, A173T, Y181C, I202V, E207D, E248S, I274V, Q278N, K281R, H334N, A360T, M377Q, I434M, L452A, K454R, K476Q, Q480K, Q524L, I526V, K527Q, E529D; gp120: V3M, N5S, K18Q, E19D, A32G, M56L, E59G, D105T, -106E, -107N, N108E, -109D, -111T, -112T, -113I, -114N, -115S, -116T, -117G, -118N, -119Y, -120S, -121I, -122A, -123R, G124E, I126M, K127R, K141Q, Q142K, R150K, V153T, N159K, -161S, A172T, T174S, V180I, Y195F, N212Q, A238S, E240K, L249I, S263Y, E265K, V267T, N272G, K277Q, D294A, -308Q, K309D, K312R, Q315Y, G318T, -328T, K329-, I343V, K361G, -372A, S373Y, -375N, -376T, -377G, -378N, -379N, -380T, -381E, -383S, -384K, -385N, I392L, N414H, K418V, T427V, N432I, N435K, T436S, T437K, I439T, K474H; gp41: V69I, L81F, G83S, I84L, S96N, Q108K, T109E, E110Y, R122K, D129G, T130I, R133S, N140I, K144Q, S154R, S163G, K166N, T210I, R214G, L219P, R221G, R231K, R233K, A245F, H258R, R276Q, K298R, L304F, T306A, I307T, V321L, Q323L, I325G, I332V, A342T; nef: S9C, I20L, T23A, G29A, K39R, Y40H, A50H, A53E, A83G, F85I, R151G, A156D, R192I, L194V, E197Q, Y202F; p2: T10-, N11A, -12H; p24: N183K; p6: S3N, T8S, -18G, -19E, E20-, E21-, P26Q, P30S, K31Q, R33-, E34-, P37-, T39I; p7: S4G, P9G, R10P, R11K, I12R, I24L; pro: I19V, T63P; rev: S8P, I18T, E32R, K39R, S54Q, C63V, I78L, T94A, Q95E, V102I, S106P, K115*; tat: E2D, N12K, K24N, T40R, Q54P, P60S, N67D, K71E, P75S, S84P; vif: V7A, R19K, R33K, G37K, R41K, H48N, P58S, R63K, R93S, G101D, M109I, P131H, Q136P, N140S, K157R, K158R, I159R, K176E, T180I; vpr: Q3R, L22I, H40Y, R85P, A93S; vpu: -2I, -3E, L4W, -5L, -7G, V10A, I18L, T24I, L33I, R35K, K44E, R47E, T61I, H73R, V79N, N80I, D81-, L82-"}}},{"name":"AF443101","node_attrs":{"div":0.14986,"accession":"AF443101","clade_membership":{"value":"C"},"country":{"value":"BW"},"date":{"value":2000.0},"Strain_name":{"value":"00BW192113"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["G216A","G224A","A227T","A278G","-280G","-305A","A379C","G438A","G444A","-473A","G481A","A519C","-527T","-614A","-695G","-699G","-700C","-701C","-705A","-706A","-707A","C774A","G791A","A797G","G815A","G818A","T858C","A920G","G959A","T974C","G1002A","-1004A","-1017T","A1022G","G1090A","A1101G","T1136C","G1139A","G1142A","T1172C","T1182C","G1205A","C1230A","G1232A","C1235T","-1260T","-1263T","A1265G","A1268G","-1271A","A1274G","T1420C","-1452A","G1474A","A1503G","C1556T","G1562A","C1706T","A1840G","A1882G","T1957C","T1996A","A2018G","A2026G","A2059G","C2080T","A2086C","A2203G","A2260T","T2263C","G2273A","A2287G","C2296T","A2327G","T2335C","T2365C","A2455G","T2527C","C2575T","A2626T","A2727G","A2818G","T2824C","C2828A","A2829T","G2830T","A2840C","T2845A","C2890T","C2908T","C2909G","A2923G","G2926A","C2930T","T2932G","C2941T","G2947A","G2950A","C2953T","C2968T","A2980G","T2996C","A3046T","C3067A","T3097A","A3107T","G3142A","G3151A","A3170T","G3205A","A3217G","C3223T","G3340A","G3382A","G3385A","A3388G","C3399T","T3412C","A3427G","G3439A","A3449C","T3469C","C3475T","G3477A","G3484A","T3497A","T3541A","A3619G","G3631A","C3665G","G3808A","G3850A","T3856C","A4003C","G4036A","T4165C","A4225G","C4258T","A4264G","C4396T","A4402G","A4432C","T4441A","T4537C","A4544G","A4573G","G4623A","C4667T","T4706C","A4737G","G4859A","G4870A","C4871A","C4937A","A4950C","C5019T","T5072A","A5085C","C5182T","C5203T","C5213A","G5226A","G5246C","G5257A","T5281C","A5282C","T5304C","T5355A","T5356C","G5357T","A5362C","G5363A","C5397A","T5415C","A5433C","A5444C","T5445C","A5446C","A5447C","T5451C","G5581C","-5602A","A5611T","T5616C","A5620G","T5621C","G5626A","G5629A","G5630C","T5645C","G5647A","A5652C","C5653T","A5656T","T5684C","A5689C","T5704C","A5712G","T5728A","T5789C","A5793G","A5797T","T5801C","-5802A","A5804C","-5805A","-5815G","-5816A","-5817T","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","-5824C","-5825A","-5826G","-5827C","-5828T","-5829T","T5840G","T5843-","G5845C","A5849G","T5850C","T5941C","A5958C","C6010T","T6024C","T6101C","A6167G","-6171C","-6175G","A6177G","G6179A","A6182G","A6185-","T6187-","A6194G","T6196A","A6197G","-6201A","-6203A","-6205G","-6207C","-6208T","A6276G","A6281C","A6311G","C6318A","T6322G","A6329-","A6330-","A6332-","C6334-","A6338G","-6340G","C6394T","T6395A","T6397A","T6490C","T6551C","C6562T","T6624C","C6632T","T6634G","G6638C","T6641G","T6654A","C6670T","T6747C","A6767G","A6774C","A6777G","A6780C","A6812G","A6819G","G6821A","T6824C","G6894C","C6895T","A6935C","T6943C","A6959G","-6965T","-6966A","-6967C","-6968A","-6971G","-6972G","-6975C","-6976A","-6977G","-6978A","-6980A","-6982T","-6993A","-6994T","-6995T","-6998G","-6999G","-7000T","G7002A","-7004T","A7005C","-7009T","A7056G","A7135G","T7138G","A7147G","T7150A","A7151G","-7153G","A7157G","G7160A","A7161C","A7163G","G7182A","G7197A","G7199A","G7234A","A7245G","A7256G","G7268A","G7270A","G7307-","T7308-","G7309-","G7311C","T7411A","G7440A","A7441G","A7463C","T7537C","C7544A","A7589T","T7618C","A7626T","G7628A","A7629C","T7633A","C7684T","C7690A","C7699T","A7714C","A7735G","A7744G","C7771T","T7783C","G7790A","G7831A","G7835A","A7840G","G7846A","A7855G","T7879C","G7942C","G7947A","A7998G","C8005A","G8030C","C8044A","C8051A","C8092A","A8099G","T8101G","G8113A","G8185A","G8234A","T8235C","G8254A","A8284G","C8286T","G8304C","T8337A","A8342G","T8366C","A8402G","G8407A","G8414A","A8441T","A8446G","C8488T","G8490A","A8494C","G8501C","A8522G","G8529A","A8536G","A8537G","C8702T","G8774A","T8786G","G8794A","A8816G","G8844T","T8855A","C8882A","C8906A","A8918G","C8930T","C8934A","T8935A","T8947G","T8948G","A9012T","-9029A","T9115C","A9135G"],"INT":["A124T","K219N","N222K","I257V","G283D"],"RT-p51":["V60I","R78G","E177D","K211R","Q245I","K249Q","D250E","P272A","D324E","H334Q","T338S","R357K","T359S","A435V"],"RT-p66":["V60I","R78G","E177D","K211R","Q245I","K249Q","D250E","P272A","D324E","H334Q","T338S","R357K","T359S","A435V","R461K","S468T","Q524E"],"gp120":["K35T","V57A","N102K","-106A","-107K","-109R","K141R","K143Q","P155Q","D157N","N159S","N160E","S162-","S181T","I257T","E262Q","S263A","V267E","D297N","I298T","I305V","E307A","-308G","K309A","K320E","K322R","E323K","Y324H","S347T","K361Q","-368N","T371G","-372N","N374T","E401G","N432K","S433G","N435D","T437A","G443E","R448K","D449N","K464R","I468V","E472K"],"gp41":["V2A","G3L","I4-","R46K","M54L","L81I","Q108L","D129E","E137D","M176I","V178I","G215E","D232G","A243P","A245V","D247E","F263L","I266V","R277S","V311T","A328V","R334T","L345Q"],"nef":["I20M","R22K","Q35R","A49V","A50T","N51T","E63K","E65G","R151K","A168L","H171Q","H188Q","L198K","Y202W"],"p17":["K15T","V35I","A37T","G49D","K62Q","K119E","E122A"],"p24":["L15I","V91I","M96L","S120N","I124V","A177S","T178S","D180E","V230A"],"p7":["R3K","I13V"],"pro":["T74A"],"rev":["S8N","E32Q","H53N","S61T","A68E","H82N","D84G","C85G","G89S","G113R","T114A"],"tat":["N7K","K19N","N23T","K24P","V69L","Q78P","D80N"],"vif":["V13I","S36N","I51V","S95K","D117E","K122Q","R167Q"],"vpr":["P37T","S41N","E48Q","I60L","L67P","L84T","R85L","Q86P"],"vpu":["-2L","-3D","-5A","I6A","-7I","V13A","V14I","I17F","V26A","I28L","W41R","V69-","D70-","M71-","G72-","H73-","L74-","R75-","L76-","L77-","D78-","N80D","D81M"]},"labels":{"aa":"INT: A124T, K219N, N222K, I257V, G283D; RT-p51: V60I, R78G, E177D, K211R, Q245I, K249Q, D250E, P272A, D324E, H334Q, T338S, R357K, T359S, A435V; RT-p66: V60I, R78G, E177D, K211R, Q245I, K249Q, D250E, P272A, D324E, H334Q, T338S, R357K, T359S, A435V, R461K, S468T, Q524E; gp120: K35T, V57A, N102K, -106A, -107K, -109R, K141R, K143Q, P155Q, D157N, N159S, N160E, S162-, S181T, I257T, E262Q, S263A, V267E, D297N, I298T, I305V, E307A, -308G, K309A, K320E, K322R, E323K, Y324H, S347T, K361Q, -368N, T371G, -372N, N374T, E401G, N432K, S433G, N435D, T437A, G443E, R448K, D449N, K464R, I468V, E472K; gp41: V2A, G3L, I4-, R46K, M54L, L81I, Q108L, D129E, E137D, M176I, V178I, G215E, D232G, A243P, A245V, D247E, F263L, I266V, R277S, V311T, A328V, R334T, L345Q; nef: I20M, R22K, Q35R, A49V, A50T, N51T, E63K, E65G, R151K, A168L, H171Q, H188Q, L198K, Y202W; p17: K15T, V35I, A37T, G49D, K62Q, K119E, E122A; p24: L15I, V91I, M96L, S120N, I124V, A177S, T178S, D180E, V230A; p7: R3K, I13V; pro: T74A; rev: S8N, E32Q, H53N, S61T, A68E, H82N, D84G, C85G, G89S, G113R, T114A; tat: N7K, K19N, N23T, K24P, V69L, Q78P, D80N; vif: V13I, S36N, I51V, S95K, D117E, K122Q, R167Q; vpr: P37T, S41N, E48Q, I60L, L67P, L84T, R85L, Q86P; vpu: -2L, -3D, -5A, I6A, -7I, V13A, V14I, I17F, V26A, I28L, W41R, V69-, D70-, M71-, G72-, H73-, L74-, R75-, L76-, L77-, D78-, N80D, D81M"}}}]}]}]}]}]},{"name":"C_NODE_0000031","node_attrs":{"div":0.08626999999999999,"clade_membership":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["A73-","A74-","T75-","A76-","A77-","A78-","G79-","C80-","T81-","T82-","G83-","C84-","C85-","T86-","T87-","G88-","A89-","G90-","T91-","G367A","G702-","G703-","A704-","A3817G","T4074A","T5062G","C5168A","T5684C","G6165C","G6179A","-6209A","T6285A","G6368A","G7190A","G7677A","A8372-","A8892C","T8903C","T8947A","T9132C"],"INT":["F100Y"],"RT-p51":["H334Q"],"RT-p66":["H334Q"],"gp120":["V144E","A172T","T371-","D446N"],"gp41":["S125N"],"nef":["K184Q"],"p17":["G11E"],"vif":["I159R"],"vpr":["L22I"]},"labels":{"aa":"INT: 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E25D, I84V, K156N, R187K, D253E; RT-p51: E39D, L234P, Q245K, D324E, R358K, T359A, I434M; RT-p66: E39D, L234P, Q245K, D324E, R358K, T359A, S554K; gp120: -3G, -4E, K18R, T22A, Q54L, Q86E, N102S, -106V, -107N, -109K, -110D, -111N, -112T, N113T, -114C, R138K, Q142N, R150K, N159-, S162-, V173A, T174A, S181N, Y195C, H212Q, S236G, L249M, L260F, N261K, E265T, V267N, N272S, I279V, I281L, K307N, -308K, K312R, R316E, K322A, H324Y, -328R, K329-, K332N, -368Y, -370S, -371T, L388I, P389Q, K393R, I395F, E401K, R404K, K418E, N432P, N436A, T437A; gp41: V7L, I24L, R46Q, Q66R, K77R, L91F, Q108E, E110Y, D113G, R122K, N125E, N140I, A151E, D163S, N166H, T210I, L219P, G220R, Q229P, I235V, F263C, A267V, A270V, V271L, F321Y, R327N, I329F, P333H, R334-; nef: K4N, R10A, -12G, A15N, E24R, G29R, G31Q, A32-, A33-, S34-, Q35-, D36-, L37-, D38-, K39-, H40-, G41-, T48-, A49-, A50-, T51-, N52-, A53-, D54-, C55-, A56-, W57-, L58-, Q59-, A60-, Q61-, H116N, R151E, N162K, S169H; p1: H9Q; p17: K15N, K18R, M30R, I61M, Q62V, K69R, L85I, N109K, K114N, A119K, D121A, E122N, K123E, -124K, Y132F; p2: A7T, N8Q, S9H, -10N; p24: H87Q, K154R, F161-; p6: S3N, F17S, R33K, S40A, K42R; p7: K33E, E51N; pro: V63L; rev: E32K, R38Q, H53R, S54E, I78L, G89A, V102I; tat: N7S, Y26F, H29R, T40K, I69V, P75S, R78Q, S84P; vif: I31T, R33K, G37N, F39V, K67T, T74P, R93K, I124L, N176K, P177S, H187L; vpr: P4V, H40N, S41N, G43N, Q44-, Y45-, I46-, Y47-, T49I; vpu: -3N, V14A, I18L, V22A, S65A, G72D, H73M, L74G, R75N, L77R, D78L, V79L, N80D, L82I"}}},{"name":"MF109607","node_attrs":{"div":0.15163,"accession":"MF109607","clade_membership":{"value":"C"},"country":{"value":"GB"},"date":{"value":2014.0},"Strain_name":{"value":"14727_1_42.3"},"LANL_subtype":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["C365G","A367G","C417T","T419C","C435A","G452A","A508G","A512G","A516T","A540G","A606G","A607G","G686A","A691C","A692G","A700G","G716A","T777A","G815A","T824C","G836A","T974C","G1031A","G1139A","C1220T","C1229T","G1232A","C1292A","G1313A","G1328A","G1339A","A1346G","A1349G","G1354C","G1355A","A1359T","A1450G","A1458-","C1460A","G1469A","T1481C","G1562A","C1610A","G1619A","G1622A","G1640A","T1646C","C1693-","A1694-","G1695-","A1696-","G1697-","C1698-","C1699-","A1701-","C1702-","A1703-","G1704-","C1705-","C1706-","C1707-","C1708-","A1709-","C1710-","C1711-","A1712-","G1713-","C1714-","A1715-","G1716-","A1717-","G1720T","G1726A","C1751T","G1760A","G1779-","A1780-","-1786A","-1787A","G1846A","C1849T","G1852A","G1912A","A1921G","T1987C","A2059G","A2063T","A2140G","G2221A","A2286G","G2290A","C2353T","G2413T","G2470A","A2482C","A2509G","A2512T","G2578A","A2592G","C2605T","A2611G","G2704A","A2715G","C2828G","C2831T","G2869A","C2890T","C2909G","A2925G","C2927T","A2928G","A2929C","A2962G","G3010A","T3097A","T3112C","A3130T","A3136G","G3166A","T3172A","G3173A","A3190G","T3197C","G3205A","G3250A","T3253C","A3280G","A3283G","T3349C","C3380T","G3385A","A3388G","A3442T","G3487A","G3494A","C3500G","A3592T","T3602C","T3644A","C3652T","G3684A","G3685A","C3688A","C3691T","T3721A","G3796A","C3826T","G3850A","T3853C","T3856C","C3865T","A3901G","T3904C","T3909A","G3925A","A3955C","C4042T","A4051G","T4085C","G4131C","G4145A","C4181A","T4240C","A4420G","T4428C","A4495G","A4498T","G4583C","G4623A","T4640C","T4715C","C4724T","G4737A","C4757T","G4765A","A4769T","G4774A","A4787G","C4841T","C4937A","A4950C","A4958T","C4988A","T5006C","T5043C","A5058C","A5113G","A5119G","T5209C","A5215C","T5237C","C5275T","T5356C","G5363A","G5370A","G5386A","G5403A","A5448T","C5463T","C5479T","G5538A","G5543-","A5544-","A5556T","A5576C","A5594G","-5600G","-5601T","-5602A","A5607-","A5608-","T5609-","G5610-","T5612-","A5614-","A5615-","T5617-","A5623G","G5624C","A5625G","A5628G","A5656G","A5664T","A5668T","T5704C","A5720G","G5775A","G5784T","G5791T","G5808-","-5811G","T5817A","G5856A","G5861A","G5863A","G5864-","A5866-","T5871C","C5884A","T5980C","C6145T","A6158G","C6160A","T6163C","A6176-","A6177-","T6178-","A6182-","T6184-","A6185-","T6187-","A6188-","A6192T","-6198G","-6201A","-6202T","-6203G","-6205G","-6207C","-6208T","-6210A","-6225A","A6226G","A6232G","A6276G","A6279G","C6280A","G6323-","A6324-","T6325-","A6330-","A6332-","A6335-","A6338-","T6343C","T6385C","A6388G","T6424C","G6425A","T6436G","G6451A","C6469T","C6499T","A6535G","A6553G","C6563A","G6572A","T6598C","A6605G","G6611A","C6612T","A6668G","G6669C","G6725A","C6729A","A6730T","G6732A","C6752A","C6758T","T6763C","A6764T","A6765T","G6771A","A6773G","A6777G","G6779C","A6780T","A6788G","A6799C","A6800C","G6806A","G6818A","-6830C","-6831C","-6832A","C6833A","C6834A","A6836-","A6837-","T6838-","A6854C","A6856G","T6863-","C6864-","T6892C","C6895T","C6925T","A6947-","G6948-","T6949-","A6950-","C6951-","A7007-","G7076A","C7077A","C7124A","A7144T","A7155-","G7182C","A7216G","A7231G","A7306-","G7309A","C7344T","T7386C","C7400G","G7477A","G7517A","A7532C","T7588C","G7589T","A7626T","G7628A","G7640-","T7666G","A7689G","C7692T","A7700C","G7701A","A7713T","A7753G","A7771G","A7773G","T7801G","G7818A","G7846A","G7883A","T7913C","G7997A","A7998G","T8016C","A8029G","G8030T","C8037T","C8038G","C8047T","G8050A","T8060A","G8079A","C8112G","A8128G","C8183T","A8284G","A8297C","G8304C","-8369C","-8373A","-8374A","-8375A","G8376A","A8402G","A8403G","G8404A","G8407-","A8408-","C8410-","T8411-","G8414-","C8415-","C8416-","A8417-","G8418-","C8419-","A8420-","G8421-","C8422-","A8458G","G8516A","G8517C","A8531-","G8532-","C8543T","A8591C","C8603A","A8636T","T8645C","A8652C","T8690C","A8729G","T8770A","A8823G","A8844C","A8858G","G8861A","G8868A","G8882A","T8883C","G8945A","A8952-","A8953-","A8954-","G8955-","A8956-","C8957-","T8958-","G8959-","T8961-","G8962-","A8963-","A8965-","A8967-","G8968-","A8969-","A8980-","G8981-","G8982-","G8983-","A8984-","C8985-","T8986-","T8987-","T8988-","C8989-","C8990-","G8991-","C8992-","T8993-","G8994-","G8995-","G8996-","A8998-","C8999-","T9000-","T9001-","T9002-","C9003-","C9004-","A9005-","C9006-","G9008-","G9010-","G9011-","C9012-","G9013-","T9014-","G9015-","G9016-","T9017-","C9018-","T9019-","G9020-","G9021-","G9022-","C9023-","G9024-","G9025-","G9026-","A9027-","C9028-","T9029-","G9030-","G9031-","G9032-","A9034-","G9035-","T9036-","G9037-","G9038-","T9039-","C9040-","A9041-","A9042-","C9043-","C9044-","C9045-","T9046-","C9047-","A9048-","G9049-","A9050-","T9051-","G9052-","C9053-","T9054-","G9055-","C9056-","A9057-","T9058-","A9059-","T9060-","A9061-","A9062-","G9063-","C9064-","A9065-","G9066-","C9067-","T9068-","G90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D70E"}}}]}]}]}]},{"name":"C_NODE_0000036","node_attrs":{"div":0.08810999999999998,"clade_membership":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["-1459A","A2032G","T4537C","T5237C","-5620C","G5707T","-6331C","-6333C","A6338G","C6758T","-7009C","G7589A","G7995A","G9030A","-9033G"],"RT-p66":["V466I"],"gp120":["-161S","H302Y"],"gp41":["A96N","E110D","R231K","Q345L"],"nef":["Y120F"],"p17":["E122D"],"tat":["L68P"],"vif":["K36S"],"vpr":["Y45H"],"vpu":["V34L"]},"labels":{"aa":"RT-p66: V466I; gp120: -161S, H302Y; gp41: A96N, E110D, R231K, Q345L; nef: Y120F; p17: E122D; tat: L68P; vif: K36S; vpr: Y45H; vpu: 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I31V, I72V, Y100Q, V165I, I201L, A205T, A265V; RT-p51: A36E, T48S, D123G, I135K, I142V, S162Y, A173T, I178M, A200T, E207K, E248D, D250E, A288T, P294T, E297A, R358K, T359N, S379G, A435M; RT-p66: A36E, T48S, D123G, I135K, I142V, S162Y, A173T, I178M, A200T, E207K, E248D, D250E, R277K, A288T, P294T, E297A, R358K, T359N, S379G, A435M, K454N, T470S, T477A, D488E, S491P, K527N, V531I; gp120: N5Q, D29N, E59G, Q86E, N102I, N108-, T110-, -112V, -114H, -115S, -116S, -117T, -118R, -119E, F131Y, A133S, R138W, L156I, D157N, N160A, T174K, S181T, D183E, K203Q, N206D, N212T, R245S, T255I, N261K, E262D, S263P, E265R, S306D, -308G, K309A, K322Q, N327G, S365N, -368Y, -370G, -371T, -372G, -378N, -379A, -380N, -381S, -382T, -383H, -384E, -385N, N397R, E401K, R404Q, K418T, T427V, N432E, -433A, T437I, N446D, K464Q; gp41: V7M, I24M, T25A, A30S, Q66R, L70V, I72L, K77Q, K106R, Q108A, D110-, M115L, D121E, R122K, R133Q, D137E, N140I, K147Q, D153N, N156D, N157S, D163S, N166K, V178I, G220E, E225G, A245I, V271A, S287N, I301V, R324A, C326G, R334T; nef: G3N, S8C, S9-, I10-, V11-, R22Q, A27E, E28G, G29-, A32P, D38A, A49V, R151A, E152D, A156S, N157S, S169N, M173T, K182Q, S188L, A190G, L198K, Y203F; p17: K26R, H28R, M30R, L31I, Q69K, S111C; p2: N9S, -10N; p24: A116N, S120A, V191I, S225G; p6: L1F, S3N, A12V, F15S, F17P, -18G, -19F, E20K, K27R, P30T, K31R, T39I, S47N; p7: S4G, T50S; pro: I19T, E35D, K43R; rev: V16A, R17K, I18A, R50G, C63Y, A68T, L73F, S99G, K115E; tat: N12K, K19Q, A21P, K24S, D64G, P81Q, E85K; vif: N22H, Y30H, V31I, R34K, K67T, R92K, I130F, R183H, G185E; vpr: S41N, E48A, I60L, I63M, Q77H, L84M; vpu: M1K, -2F, -3A, -4I, -5Q, 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p7: S9A, I12T, T50I; pro: L63H; rev: E10A, I21L, R50K, T62A, R66G, S88N, P100S, V102I, C107Y, A108T; tat: P3L, N7K, K19E, H29R, E63T, N67T, L68P; vif: V51I; vpr: Q28R, N41S, V57A, I61M, L84W, S94G; vpu: -2L, -3N, -4L, -5L, -8A, -9R, -10V, I24T, A65S"}}}]}]},{"name":"C_NODE_0000045","node_attrs":{"div":0.10273999999999998,"clade_membership":{"value":"C"}},"branch_attrs":{"mutations":{"nuc":["C152T","T1491C","C3095A","C3504G","C5221T","T5843A","G5848A","C6115T","G6121A","-6225A","G6328T","A6605G","A6669G","A6716G","C6729A","A6733C","A6789C","A6854G","T6932A","-6948A","A7995G","G8152A","C8386A","G8780A"],"RT-p51":["Q334N"],"RT-p66":["Q334N","T470S"],"gp120":["N251D","E293N","K312A","S360T","S365N","N369-"],"gp41":["K231R"],"nef":["A15D","M194L"],"p17":["D122-"],"p7":["S9P"],"rev":["V102I"],"vpu":["V79D","D81N"]},"labels":{"aa":"RT-p51: Q334N; RT-p66: Q334N, T470S; gp120: N251D, E293N, K312A, S360T, S365N, N369-; gp41: K231R; nef: A15D, M194L; p17: D122-; p7: S9P; rev: V102I; vpu: V79D, 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D6E; RT-p51: K11R, T27S, A36E, D39N, T48S, E169D, V179D, Y181C, M184V, R277K, I292V, L310I, D324E; RT-p66: K11R, T27S, A36E, D39N, T48S, E169D, V179D, Y181C, M184V, R277K, I292V, L310I, D324E, I452M, Q524E, R530K, V531I, K558R; gp120: T35A, V57D, E59V, D71G, D74E, E102N, -106K, -107V, N108T, N109Y, T110N, -111Q, -112T, E125-, I126-, A133V, E136D, Y145H, I153V, V154I, P155E, L156F, N160T, S161E, N201K, K203E, E239K, R245S, S246Y, L249K, T250S, N251D, T255A, E262Q, K277E, T288A, D294A, K307A, -308Y, N311K, Q315L, R316N, H324D, N327G, T330N, K332T, N358Y, -368M, -370S, I388L, E401G, R404Q, M406I, G443I, D446N, R448K, D449N, I463V, E472A; gp41: T67A, D109N, K144I, N160S, N166H, K172R, G214E, G220R, D232G, A245V, F263L, A268T, V270A, L294S, S302N, G314R, V321L, Q323L, H331L; nef: M20I, E38A, A49P, E59A, F81Y, L100I, R151T, E155K, A156D, C163S, E174D, S187I, R192H, R194K; p17: A67S, L68F, T90Q, V94I, I111M, Q112K, A118Q, K119A, E120K, A121E; p2: -7T, -10N; p24: I15L, F32Y, T107S; p6: -18G, -19E, K27R, R33K; p7: S4G, K41Q; pro: K45R, Q92H; rev: I21V, R38Q, K50R, I55L, L64V, A68E, L73F, H82N, S86N, *101Q, S112F; tat: A21D, Y26F, S62G, N67S, G79R, P81Q; vif: Y30H, N36K, F39V, H48N, E61D, R63K, I66V, T74P, R92G, R93S, Y111H, K158R, I159R, K167Q, N176K, R181K, R184K, H187Q, T188S, H192Q; vpr: S4A, Y15I, L20I, Q77R; vpu: -2Y, -3D, -6I, -7L, -9V, L16F, I20V, V26A, I28L, W41R, L74V, 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R76Q"}},"children":[{"name":"KU820840","node_attrs":{"div":0.15859,"accession":"KU820840","clade_membership":{"value":"CRF08_BC"},"country":{"value":"MM"},"date":{"value":2013.0},"Strain_name":{"value":"mSSDU220"},"LANL_subtype":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["C482A","G491A","G498A","A507C","A518G","A578T","C583T","A584G","G607A","A614C","A645G","A666T","-699A","-700C","G740A","A797G","T851C","G980A","A1001G","A1007G","T1061A","T1100C","C1103T","A1259G","G1313A","T1335C","C1439T","A1442G","G1450A","T1482G","G1543A","A1580G","T1613C","A1644C","T1646G","T1681C","C1693T","T1722C","G1727A","C1790T","G1841A","A1857G","C2087T","C2199A","A2200G","C2202A","A2215G","A2241G","A2260G","T2269C","A2287G","A2311G","A2341G","A2374G","G2392T","T2431G","A2461G","C2464G","C2503T","G2530A","C2671T","G2683A","A2716G","A2734G","T2737C","G2926A","A2938G","G2947A","T2983C","A3088G","C3100T","C3121T","A3127G","T3181C","A3192G","A3217G","A3239G","A3280G","G3292T","A3364G","T3368C","C3380T","C3399T","A3400G","G3532A","T3542C","A3574G","G3607A","G3643A","T3644A","A3675G","T3712C","G3817A","C3857T","G4027A","A4096G","G4148A","C4210T","A4246G","T4247C","G4252A","A4254G","G4335A","A4338G","G4516A","A4636G","A4661G","T4676C","A4684G","G4689A","C4721A","C4728A","A4733T","T4761G","T4907C","T4917C","A4974T","T4991C","T5028C","G5140A","T5147C","C5171T","C5203T","C5250A","G5257A","A5287C","A5299G","G5370A","C5406T","C5412G","A5418G","C5463T","C5472T","G5548A","G5565A","A5576G","-5601G","T5604-","G5620-","A5622-","T5623G","-5626T","-5628G","C5658T","C5663T","G5668A","A5687T","T5688G","T5704G","A5760G","A5787T","T5788A","T5789C","A5790-","C5792G","A5794G","C5795G","-5799T","-5800G","-5801T","-5802C","-5803A","-5804A","-5805C","-5806A","-5807A","-5808T","A5825G","T5851A","G5853C","A5856G","G5882A","A5907G","A5911C","T5941G","C5974T","T6024A","T6025G","A6026T","T6034C","C6151T","G6158A","A6160C","-6165C","-6167G","-6174A","-6175A","A6180G","A6183C","T6186A","A6192G","-6195C","-6198G","-6201C","-6203C","-6204A","-6205C","-6207A","-6208T","-6209T","-6210G","-6211G","-6213T","-6220G","-6225A","-6226T","C6241T","G6251A","T6263G","G6267C","A6273G","G6277A","T6301C","A6304G","A6330G","G6331A","C6334T","T6403C","A6425G","A6430C","C6441T","A6448G","T6460C","C6483A","T6511C","A6535G","A6581G","T6598C","A6628G","A6640G","T6654A","A6655T","A6689G","C6736G","C6758T","A6774G","A6775T","A6779C","T6793C","A6806G","G6807C","A6825T","C6833A","T6835A","A6837C","A6848G","A6849T","C6855A","T6860C","C6861A","C6919T","G6935A","G6936A","C6937A","T6943C","G6947A","T6949G","C6955G","-6956C","-6957T","G6962A","G6963A","-6964G","-6967A","-6968G","-6969A","-6970A","-6971A","-6972A","-6973T","-6983A","-6989A","-6992T","-6997C","-7004G","-7005A","-7006T","-7007A","-7008A","-7009C","A7016C","A7040G","G7057A","A7063G","A7069T","C7096T","A7107G","A7149C","-7156T","G7160A","A7161C","T7162A","A7165T","G7182A","G7199A","A7265T","G7285A","G7309A","-7311C","C7313-","T7314-","A7315-","G7322A","G7340T","G7341C","G7343T","C7344T","A7373G","A7375G","A7420C","C7421A","A7422G","G7423C","C7424A","A7426G","A7427-","G7428-","C7429-","A7430C","G7492A","A7522G","A7532C","T7537A","G7552A","C7590T","C7625T","A7627T","A7630T","G7633A","G7640A","T7642A","A7685T","C7690T","G7717A","A7720G","A7722T","A7733C","A7769G","A7771T","A7773G","A7791G","T7801A","G7915A","G7918A","A7998G","C8005G","A8019G","A8055G","G8105A","G8133C","G8158A","T8184A","G8185A","T8203A","C8221A","T8239A","A8261G","C8291T","A8303G","G8304T","G8317A","T8323G","C8328T","G8330A","C8331T","C8406A","T8426G","G8453A","T8492C","G8528A","G8531T","C8606T","T8651C"],"INT":["M84I","A125T","K160R","R187K","K188R"],"RT-p51":["T35K","A36E","K49R","D324E","K366R","I382V","E399D","A435V"],"RT-p66":["T35K","A36E","K49R","D324E","K366R","I382V","E399D","A435V","Y483H","L517I","K527R"],"gp120":["N1S","V10I","K18R","E19D","D29E","V57E","E102N","-105D","-106V","-107K","-109G","-112T","-114N","-115S","-116T","-117S","-118T","-119H","-120N","-121W","-122M","-123K","-124D","A133T","L137V","R138T","K140R","N160G","S161N","T191A","A196V","P210Q","I243V","T267N","I279V","D294E","H302Y","E307G","-308D","K309Q","S318A","H324L","P326K","N327T","K332V","A334K","S336H","G361K","G365R","-368M","-370T","-372N","-374S","-375D","-384D","-385N","I388L","I396V","K418R","N432T","G443E","D449N","T471S"],"gp41":["G3A","V7M","G13S","A14L","I24V","Q39H","Q40S","Q41K","S42H","N43-","K77Q","D78E","A96V","Q108Y","D113K","T128S","N140I","K144Q","K156D","N157S","D163S","N166K","D232S","N239S","N251S","A268T","S277N","L294Q","N320D","R330C","R334V","A342I","A343I"],"nef":["D28E","E63D"],"p1":["I5L"],"p17":["E55K","K58Q","I61M","A83V","G91E","E93D","I104V","I111F"],"p2":["-7T","T8N","S10-"],"p6":["L1P","P5L","F15L"],"p7":["F6V","R26K"],"pro":["V15I","K20R"],"rev":["R17K","I21V","H53D","S86N","G104R","G113R"],"tat":["A58T","N67S","L68P"],"vif":["K17R","K33R","A35T","K36N","D45E","H48N","L59V","Y111H","I130F","G185E"],"vpr":["Y15H","T49N","A89T"],"vpu":[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R17K, I21V, H53D, S86N, G104R, G113R; tat: A58T, N67S, L68P; vif: K17R, K33R, A35T, K36N, D45E, H48N, L59V, Y111H, I130F, G185E; vpr: Y15H, T49N, A89T; vpu: A5V, A19V, V21I, Y27L, L33V, V34I, L82I"}}},{"name":"KU820846","node_attrs":{"div":0.15647,"accession":"KU820846","clade_membership":{"value":"CRF08_BC"},"country":{"value":"MM"},"date":{"value":2013.0},"Strain_name":{"value":"mSSDU91"},"LANL_subtype":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["G367A","A379G","T396C","C419A","T467C","C482T","T495G","C525T","C604A","C623T","C635T","T662G","G686A","G687A","C688A","A690G","A692G","A694C","G695T","C697A","T698C","C774A","A815G","A887G","G1002A","A1034G","A1089G","C1098G","C1099T","A1115T","T1172C","C1174G","A1307G","G1388A","G1430A","A1458G","C1679T","C1706T","C1721T","A1781G","G1804A","A1835G","C1960T","A2059G","T2062C","C2083T","A2131G","A2154G","A2164G","C2254A","T2323C","A2344G","A2350G","A2362G","A2459G","C2464A","C2575T","G2602A","G2710A","C2828G","C2848T","G2869A","T2905C","G2950A","C2968G","A3001G","T3002C","A3010G","C3013T","T3049C","A3067C","A3103G","A3127C","A3241C","A3251G","A3271G","G3385A","A3449C","G3454A","G3487C","A3611C","T3644C","T3649A","A3674C","A3676G","G3685A","T3721A","A3814G","A3816G","G3952A","A3973G","G4109A","T4110C","C4138T","A4178G","G4263T","G4376A","T4428A","A4433G","T4534C","C4576T","G4607A","A4625G","T4640C","G4687A","T4694G","T4701C","C4757T","G4769A","G4774A","G4779A","G4799A","G4829A","G4859A","G4864A","A4870G","C4902A","A4904G","G4953A","A4968G","A5021C","A5049G","T5084C","A5090G","C5114A","A5143G","A5164T","C5197T","G5240A","A5279G","A5284C","A5291G","G5336T","C5351T","G5355A","G5363A","A5372G","C5412A","A5453T","C5461A","A5495G","C5513T","G5523A","G5534A","G5556A","A5575G","C5579T","C5600-","-5603A","T5612C","T5616A","-5621C","-5626G","-5628A","G5629-","C5630-","A5631-","G5636T","A5640C","G5643T","A5644G","C5653T","T5654C","G5700A","T5708A","A5716G","G5717A","G5725A","T5728A","G5781T","A5793C","A5830G","G5832C","A5840G","G5861A","G5862C","C5869A","T5899C","G5935A","A5938G","G5948T","G5954A","A5955G","G5956T","A6009G","G6023C","A6130G","-6165G","A6168-","T6169-","G6170-","T6171-","T6172-","A6173-","A6180T","T6181A","A6185G","A6189G","T6193A","-6195G","T6196G","A6197G","-6198T","-6201A","-6205G","-6207G","-6208A","-6209C","-6210C","-6211A","-6213C","-6214G","-6215A","-6216T","-6217A","-6218G","-6219C","-6220A","-6225G","-6226G","T6261A","A6276T","A6324G","G6326A","A6333G","T6341A","A6344G","G6345A","A6346G","A6374G","A6395T","A6458G","T6460G","C6465A","A6502G","A6535T","C6567T","G6569A","A6574T","A6589C","C6599T","C6612T","T6654C","A6661G","A6664G","T6688C","A6777G","G6801T","G6818A","C6819A","A6836G","A6837G","T6838A","A6848C","C6855G","A6856C","A6905G","-6956A","-6957A","A6959G","G6962-","G6963-","A6965-","C6966-","-6977T","-6978A","-6979C","-6980G","-6981A","-6982G","-6983C","C6984T","-6989G","-6992A","-6997A","-6998A","-6999G","-7000T","-7001A","-7002A","-7003T","-7004A","-7005G","-7006C","-7007T","-7008T","-7009A","G7054A","G7055A","G7088C","C7089A","A7099T","G7132A","-7151C","-7152A","-7153G","A7155C","-7156A","C7170T","A7177G","G7190A","G7197A","T7250G","G7252A","A7261C","T7308C","G7310-","A7312-","A7498C","A7502G","C7603T","T7604G","C7605T","T7622A","C7623A","A7626T","G7628A","A7629C","A7655C","T7675C","A7676G","G7677A","A7693T","A7700C","G7701A","A7735G","A7741G","A7742C","A7769C","T7783C","T7852C","C7874A","T7876C","A7880G","A7895G","C7929T","A7942G","G7944A","A7953G","A7964G","G7976A","A8011C","T8060A","A8069C","G8070T","T8071C","G8079A","C8103T","G8134C","G8144A","G8170T","G8188A","C8210T","A8271T","T8279G","T8323A","C8328A","G8349A","G8350A","A8378G","T8440C","A8458G","T8504C","C8552A","G8554A","T8584A"],"INT":["K14R","V112T","I135V","G163V","V201I","I218K","I220V","A278T","R284G"],"RT-p51":["K20R","D53E","K122E","Q245E","D291E","E344D","I386V"],"RT-p66":["K20R","D53E","K122E","Q245E","D291E","E344D","I386V","I452L","K464N","I506L","K527Q"],"gp120":["G3T","N5K","A32S","E34S","N52S","V57L","L58M","-109E","-112Q","N113-","V136E","K141M","-157S","D159E","N160S","T174A","T181S","N202E","T204K","A238V","E239K","E240D","R245S","A253V","-308G","R316M","A322K","P326H","N327G","K332Q","A334S","R351G","-368N","-370G","-372E","-374N","-383S","-384S","-385L","E401K","A412Q","-433Q","N434T","T436D","T439I","D446N","R448K","L466V"],"gp41":["V2A","G3L","T67A","S101V","S107N","Q108L","D109T","M118L","S125D","R133Q","K147Q","K156Q","D163N","L191I","I193V","R198G","P209L","G214E","D217G","R221G","E225K","D232N","C253S","S256L","R259H","T267I","A281T","Q323L","C326G","A342K"],"nef":["G3N","V33A","K39R","R71K","F81Y"],"p17":["G11E","K15R","H28Q","S54A","A90E","N109K","A118K","E120A","A121D"],"p2":["-11A","T12-"],"p24":["L15I","V91I","S120G","P123V","E128D","T148S"],"p6":["R42K"],"pro":["I13V"],"rev":["G3E","D7N","R14K","R32G","K39R","R43K","I55L","V71E","Q74P","G96R","S99N","A108S","A114T"],"tat":["Y26F","R29S","K40R","S46F","R53K","N67D","Q78R","G79R","T82A"],"vif":["R34K","F39L","R63K","V65I","S93N","N95S","L106M","A123T","I128V","K155E","N176K","N186S","*193L"],"vpr":["P4T","V46I","T59A","I63V","Q77H","V84M"],"vpu":["L2S","D3E","-7V","A8-","G10V",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K14R, V112T, I135V, G163V, V201I, I218K, I220V, A278T, R284G; RT-p51: K20R, D53E, K122E, Q245E, D291E, E344D, I386V; RT-p66: K20R, D53E, K122E, Q245E, D291E, E344D, I386V, I452L, K464N, I506L, K527Q; gp120: G3T, N5K, A32S, E34S, N52S, V57L, L58M, -109E, -112Q, N113-, V136E, K141M, -157S, D159E, N160S, T174A, T181S, N202E, T204K, A238V, E239K, E240D, R245S, A253V, -308G, R316M, A322K, P326H, N327G, K332Q, A334S, R351G, -368N, -370G, -372E, -374N, -383S, -384S, -385L, E401K, A412Q, -433Q, N434T, T436D, T439I, D446N, R448K, L466V; gp41: V2A, G3L, T67A, S101V, S107N, Q108L, D109T, M118L, S125D, R133Q, K147Q, K156Q, D163N, L191I, I193V, R198G, P209L, G214E, D217G, R221G, E225K, D232N, C253S, S256L, R259H, T267I, A281T, Q323L, C326G, A342K; nef: G3N, V33A, K39R, R71K, F81Y; p17: G11E, K15R, H28Q, S54A, A90E, N109K, A118K, E120A, A121D; p2: -11A, T12-; p24: L15I, V91I, S120G, P123V, E128D, T148S; p6: R42K; pro: I13V; rev: G3E, D7N, R14K, R32G, K39R, R43K, I55L, V71E, Q74P, G96R, S99N, A108S, A114T; tat: Y26F, R29S, K40R, S46F, R53K, N67D, Q78R, G79R, T82A; vif: R34K, F39L, R63K, V65I, S93N, N95S, L106M, A123T, I128V, K155E, N176K, N186S, *193L; vpr: P4T, V46I, T59A, I63V, Q77H, V84M; vpu: L2S, D3E, -7V, A8-, G10V, L12F, I13V, L16S, V34K, R37E, D40N, W41R, E58D, R73H, R75G, D78G"}}}]},{"name":"CRF08_BC_NODE_0000002","node_attrs":{"div":0.11501,"clade_membership":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["G2693A","-5621A","T5627-","-6167A","-6174A","-6175C","A6488C","C6857T","-6967A","-6971A","T7150G","-7152C","A8273G"],"RT-p51":["A200T"],"RT-p66":["A200T","V466I"],"gp120":["N212H"],"gp41":["M54L","R324G"],"p17":["-122E"],"vpu":["I9V"]},"labels":{"aa":"RT-p51: A200T; RT-p66: A200T, V466I; gp120: N212H; gp41: M54L, R324G; p17: -122E; vpu: 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G220R, R221G; nef: K39R; p6: K31-, D32-, R33K, S47N; p7: K10R; rev: R38Q, K39R, G88R; tat: K19E, P75S; vif: R34K, K36N, 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A91S, A125T, I218T, K269R; RT-p51: P4T, V8I, K43R, D67N, K70R, K104R, V106A, V135I, I178L, M184V, E203K, D218E, K219Q, F227L, I292V, P294T, A317V, Q334N, A435T; RT-p66: P4T, V8I, K43R, D67N, K70R, K104R, V106A, V135I, I178L, M184V, E203K, D218E, K219Q, F227L, I292V, P294T, A317V, Q334N, A435T, K527N, R530K; gp120: E19D, D74N, V80I, Q86E, T104R, N108-, -116S, -117V, -118T, -119Y, -120D, E125-, L137I, K141Q, K142N, Y145D, -157D, N158D, D159R, V180I, T181D, T191S, I197L, P210Q, H212S, N252T, A253V, E265Q, T269A, T292A, K309Q, Q315H, R316M, A322S, K332Q, S335N, S336A, G361R, -368N, -370S, P409S, N432E, -433G, T436G, T439I, K464E, E472K, A473S; gp41: T109P, M118I, D137E, K144N, K156N, D163S, T165S, D217G, G221E, F263C, L265S, F304V, A310T, A312G, I319L, G324R, I332T, A343S, Q345L; nef: S8R, V11P, R22Q, P25R, F81Y, F139Y, R151S, A156V, N162S, V180I, S187I, R192K, R194W; p17: Q65H, Q69K, A118T; p2: -7T, T8N, N9G, S10-; p24: L6I, H87Q, A92P, I124V; p6: -35G, -36P; p7: R11K; rev: I55L, Q95L, S106P, G113R; tat: A21P, L35I, K40T, Y47N, N67D, T82A, E86K; vif: N22H, F39V, H56Y, D78E, R92G, I159R, I166V, K167V; vpr: I74F; vpu: V21I"}}}]},{"name":"CRF08_BC_NODE_0000005","node_attrs":{"div":0.11803000000000001,"clade_membership":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["A1192G","G1430A","G1527A","A1528C","T1854C","G3250A","T4694G","T5062G","T5731C","A6573G","A6774G","A6781-","-6957T","A7782G","T7796A"],"gp120":["-110T","-112N","E240G","N432E","-433P"],"gp41":["N160S"],"nef":["H191R"],"p24":["K154R"],"p7":["E21T"],"pro":["I19T"],"tat":["L68P"],"vif":["I159R"]},"labels":{"aa":"gp120: -110T, -112N, E240G, N432E, -433P; gp41: N160S; nef: H191R; p24: K154R; p7: E21T; pro: I19T; tat: L68P; vif: 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V79A"}}},{"name":"KF835512","node_attrs":{"div":0.14995999999999998,"accession":"KF835512","clade_membership":{"value":"CRF08_BC"},"country":{"value":"CN"},"date":{"value":2007.0},"Strain_name":{"value":"07CNYN325"},"LANL_subtype":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["C179A","G224A","A286G","G401A","C417T","A418G","C419T","A497G","C525T","A530C","C572T","C679T","A680G","-699A","-700C","G740A","C747G","T748C","C773A","C830T","G1002A","G1004A","T1064G","G1078C","G1090A","A1115C","C1316T","G1388A","A1443T","C1491T","A1495G","A1500C","T1501C","A1508G","C1541A","G1543A","C1571T","C1680A","A1689C","A1709G","C1768T","A1879G","A1904G","A1966G","T2041C","C2071T","A2154G","A2202C","A2216T","G2248A","T2315G","T2338C","A2404T","C2419A","G2498A","A2637G","A2645G","T2672C","A2677G","C2756T","G2869A","A2884G","G2925A","G2946A","A2959G","A3007G","T3040G","G3098A","A3099G","G3151A","T3172A","G3221T","G3292A","C3322T","T3346C","A3421G","G3477A","A3491G","T3497A","A3538G","G3607A","A3651G","A3739C","A3802G","A3985G","G4036A","G4145A","C4146A","G4539A","C4543G","T4674C","A4684G","T4694A","C4721A","A4763G","A4870G","T4919C","T5006A","T5028C","C5043T","A5051G","G5060A","A5082G","T5091C","C5250A","T5263C","T5303C","T5314C","G5370A","A5377C","C5412T","T5424C","A5432C","T5439C","C5448T","T5568C","A5576C","A5581G","A5621G","G5668A","A5718G","G5781T","G5784A","A5849G","T5851G","A5896G","A5946G","G5956T","C5958A","C5974A","A6044C","G6158A","A6160C","-6165C","A6174G","A6180T","T6184C","A6192G","-6195G","-6196C","-6198A","-6202T","-6212T","-6217G","-6218C","-6219T","-6220G","-6221A","-6222T","G6277A","A6283G","T6285A","A6304G","T6310C","T6325G","A6327G","A6330G","T6331A","C6424T","T6436G","C6446A","C6477A","C6483A","A6535G","C6599A","G6601A","C6612T","G6638C","C6736A","G6773A","C6774A","T6778G","T6857G","-6956A","-6957T","-6958G","G6962A","C6966G","A6967C","-6968T","-6969C","-6970A","-6977C","-6979A","-6980C","-6981C","-6982A","-6983G","C6984T","-6986G","-6987C","-6988T","-6989C","-6990A","-6998A","-6999C","A7063G","C7064T","A7066G","A7149C","A7155C","-7156A","A7161C","G7168A","G7190A","G7197A","A7345T","A7373G","A7375G","G7402A","T7403C","C7463A","G7477A","T7615C","C7625A","A7626T","G7628T","T7642A","G7677A","G7688A","C7714A","A7722C","A7742C","A7800G","T7801A","G7835A","A7840G","T7921C","G7936A","G7944A","G7956A","A8006G","T8008G","C8047T","A8055G","G8109A","A8262G","C8290A","A8309C","G8357C","T8426C","G8453A","G8531A","G8588A","A8653G","T8672A","A8701T","A8717C","A8804G","T8831C","T8845C","T8847A","T8883C","G8902T","G8917A","G8923T","T8947G","T8948G","C8964T","-8970A","-8971C","-8972T","-8973T","-8974T","-8975C","-8976T","-8977G","-8978C","-8979A","T9014G","G9016C","T9029-","-9033G"],"INT":["A124N","S255N","D256E"],"RT-p51":["K20R","E36A","M41L","L74V","K103N","V135I","Y181C","M184V","H221Y","R277K","R284K","H315Q","D335S","A376S"],"RT-p66":["K20R","E36A","M41L","L74V","K103N","V135I","Y181C","M184V","H221Y","R277K","R284K","H315Q","D335S","A376S","R461K","I466V","S468T","N519S"],"gp120":["K31R","E34D","T35K","N64H","E102N","-105N","-106V","-107S","-109V","-110S","-111S","V144E","N158G","D159G","L198I","T208K","P210Q","L249I","A253V","E262Q","D294E","A307K","D308E","S335A","-368M","N369T","-370N","T371S","-372S","-373S","R404W","A412E","N432T","-433N","N434T","T436A","D446N","R448K"],"gp41":["I24V","L54M","Q108I","D109S","D113E","S125N","D129N","D137E","N140T","K147Q","N166R","V178I","G214E","R218K","I235V","N251S","R269K","N320S","I336L"],"nef":["W5C","K104R","Y120F","Q125H","R151S","V168A","C169S","S187I","R192K","R194M","F202W"],"p17":["H28C","Q65H"],"p2":["-7S","T8-"],"p24":["L6A","V91I","G116A","S120N","E128D"],"p6":["L1I","P30L"],"p7":["P9S","K10R","I12P","R26K"],"pro":["I36V"],"rev":["I18T","I21L","E30K","H53R","S54A","P67S"],"tat":["M1L","K19A","N67T","I69V","R76Q","G79R","G83S"],"vif":["Y30H","K33R","N95S","I166V"],"vpr":["T49N","A89T","N91T"],"vpu":["A5G","V21I","E58D","D81G","L82V"]},"labels":{"aa":"INT: A124N, S255N, D256E; RT-p51: K20R, E36A, M41L, L74V, K103N, V135I, Y181C, M184V, H221Y, R277K, R284K, H315Q, D335S, A376S; RT-p66: K20R, E36A, M41L, L74V, K103N, V135I, Y181C, M184V, H221Y, R277K, R284K, H315Q, D335S, A376S, R461K, I466V, S468T, N519S; gp120: K31R, E34D, T35K, N64H, E102N, -105N, -106V, -107S, -109V, -110S, -111S, V144E, N158G, D159G, L198I, T208K, P210Q, L249I, A253V, E262Q, D294E, A307K, D308E, S335A, -368M, N369T, -370N, T371S, -372S, -373S, R404W, A412E, N432T, -433N, N434T, T436A, D446N, R448K; gp41: I24V, L54M, Q108I, D109S, D113E, S125N, D129N, D137E, N140T, K147Q, N166R, V178I, G214E, R218K, I235V, N251S, R269K, N320S, I336L; nef: W5C, K104R, Y120F, Q125H, R151S, V168A, C169S, S187I, R192K, R194M, F202W; p17: H28C, Q65H; p2: -7S, T8-; p24: L6A, V91I, G116A, S120N, E128D; p6: L1I, P30L; p7: P9S, K10R, I12P, R26K; pro: I36V; rev: I18T, I21L, E30K, H53R, S54A, P67S; tat: M1L, K19A, N67T, I69V, R76Q, G79R, G83S; vif: Y30H, K33R, N95S, I166V; vpr: T49N, A89T, N91T; vpu: A5G, V21I, E58D, D81G, L82V"}}}]},{"name":"CRF08_BC_NODE_0000011","node_attrs":{"div":0.12625999999999998,"clade_membership":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["A694C","G695T","C697A","T698C","C1098G","C1118T","A1568G","T1628G","A1709T","-1732G","-1733G","-1734T","A1759G","G1819A","G2498A","T2542C","C3129A","A3192G","T3391C","A3486G","A3674G","A3675G","G3916A","A4084G","A4178G","G4687A","T4701G","G4774A","T5424C","A5718G","T5728A","A5849G","G6029A","G6179A","A6182G","A6333G","C6334T","T6337G","A6576G","G6588A","G6593A","G7160A","G7212A","A7713T","A7734G","T7921C","A8378G","C8406A","G8453A","A8793G","A8936G","-8972T","-8973T","-8975C","-8976T","-8979A"],"INT":["I135V"],"RT-p51":["V135I","P345Q","K366R"],"RT-p66":["V135I","P345Q","K366R","I452L","K464R","K527G"],"gp120":["E59K","H212Q","R245K","E247K","S453N"],"gp41":["D137V"],"nef":["R151G"],"p17":["E120A","A121D"],"p24":["P123A"],"p6":["S47N"],"vif":["R34K","F39V","R63K"],"vpu":["W41R","D81G"]},"labels":{"aa":"INT: I135V; RT-p51: 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D81G"}},"children":[{"name":"KF835501","node_attrs":{"div":0.15657,"accession":"KF835501","clade_membership":{"value":"CRF08_BC"},"country":{"value":"CN"},"date":{"value":2007.0},"Strain_name":{"value":"07CNYN314"},"LANL_subtype":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["T200G","T201C","A214G","T305-","G365C","G367A","A388G","C419T","C434T","A461T","G498C","A500G","T539C","C558A","T571A","C575T","G607A","G644A","A690G","C747A","C749G","C872T","C890T","A941G","G1004A","T1061C","G1067A","C1136T","T1172C","G1205A","A1242G","C1243T","A1263T","A1268G","A1274C","C1330T","G1339A","C1342G","A1349C","C1350T","T1359A","G1421A","T1501C","A1529G","A1601G","A1643G","T1728A","-1729C","-1730A","-1731G","A1738C","A1746G","C1788G","A1855C","A1920G","C1979G","T2041A","C2101A","C2199A","T2206A","C2254T","T2356C","A2459G","T2485C","T2497C","C2575T","T2581C","A2593G","A2617G","A2627C","A2662G","A2693G","T2770C","C2828G","G2869A","T2885C","T2917C","A3046C","A3067G","G3094C","C3095A","G3097T","A3127T","G3151A","A3164T","G3221T","C3222G","A3224T","G3264A","G3442A","A3449C","A3529G","G3553A","G3643A","G3679A","A3703G","A3718G","A3775G","A3787G","A3816G","C3922T","A4090G","A4333G","G4376A","T4412C","C4471T","G4549A","A4625G","G4642A","C4728A","A4781G","G4799A","T4800C","C4844T","A4845G","A4860G","T4914C","A5005G","T5006C","A5057G","G5059A","T5062C","A5065G","A5085C","G5104A","A5122G","G5134A","A5249C","C5250A","A5279G","A5282C","A5291C","A5312G","C5333T","T5378C","A5432C","A5496C","C5547A","T5568C","A5575G","A5587G","C5600-","-5602C","-5603C","T5612C","A5621C","A5640T","A5687T","T5704A","G5706A","A5711G","T5731G","G5748A","G5781T","A5787T","T5788A","T5789C","A5790-","C5792G","A5794G","C5795G","-5799T","-5800G","-5801T","-5802C","-5803A","-5804A","-5805C","-5806A","-5807T","-5808T","T5851G","G5853A","G5907A","A5918G","A6031G","A6051C","G6073A","-6165A","A6174C","A6176T","T6178C","T6184G","G6186C","A6188T","A6189C","T6190C","A6194-","A6197-","T6199-","A6278C","G6323A","G6329A","T6335G","C6336G","A6338T","G6339A","C6424T","A6425G","A6438T","T6490A","A6500T","A6502T","G6575A","T6586C","G6638C","C6736T","G6776A","A6781C","A6786C","G6799T","G6806A","C6819A","C6824T","A6840G","A6854G","T6857C","A6905G","G6962A","G6963A","-6968G","-6969G","-6970A","-6972G","-6973T","C6975A","-6977T","A6978C","-6979A","-6980A","-6981A","-6982C","-6983T","-7007A","-7008C","-7009C","G7057A","C7089A","C7124A","G7150C","-7153G","A7155C","-7156A","G7252A","G7256A","A7297G","T7323C","A7342T","G7343T","C7344T","A7373G","A7375G","C7463A","A7533G","T7537C","T7615C","C7629A","G7640C","T7642A","A7655C","C7658G","G7660A","A7777C","A7782G","T7796A","A7814T","G7885A","C7917T","T8008A","C8009A","A8014G","A8032G","C8092T","A8093C","T8097C","G8180T","C8183T","A8261T","A8264C","G8317A","T8323A","G8349A","G8356T","G8357A","G8368A","C8369A","C8382T","A8393G","G8476C","C8483T","C8491A","T8492A","T8505C","G8506A","T8507G","A8516G","G8526C","T8568C","A8617G","T8795G","G8823A","T8829A","C8904A","A8905T","A8906G","A8914G","G8923T","C8966T","A8967G","G8968A","-8970G","-8971C","-8974T","-8977G","-8978C","-8993C","-8994C","G9007T","A9009G","T9012C","A9082G"],"INT":["K14R","V201I","R284G"],"RT-p51":["T35K","K122E","I178L","T200A","Q245E","Q334N","E344D","M357L","A376C","M377L","R390K"],"RT-p66":["T35K","K122E","I178L","T200A","Q245E","Q334N","E344D","M357L","A376C","M377L","R390K"],"gp120":["R18K","T22A","N66T","T104-","-107K","-109V","-110T","-111Y","-112N","N113G","-114T","K142Q","N160K","S161G","Y163G","R164K","L165N","I166S","N167S","T191A","Y195F","T216S","E241R","E262Q","D308N","K309N","N311T","Q315H","G318S","A322E","H324Y","-328R","K329-","T334A","S335P","R351G","-368N","-372G","-373S","-374N","-375S","-376N","-377S","-385T","A412E","L424I","-433K","T437E","V468I"],"gp41":["V7A","A14L","I24V","L54M","K77R","D109E","D113Q","M118L","Q119E","K144R","N160S","S165T","I171L","S205L","I264L","L265S","R277S","G293C","N320Y","I321L","F340L"],"nef":["G3S","W5L","S9K","P14S","S45T","A50E","C55Q","K92R","D161N","C163S","Q188M","H191R","R194M"],"p17":["G11E","K18R","E42D","D55Q","L75I","F79Y","G91E","M115T","E122-"],"p24":["L6M","T171V","T178S","T200I","R203K","A204G","P207S","S210T"],"p6":["F17T","E21P","T23A","A25P","P26A","K27E","-35A","P37-"],"p7":["I12T"],"pro":["K41R","Q61E"],"rev":["A11E","I18T","S54K","S56G","T62A","H82S","G111V","S112F"],"tat":["M1T","K19A","K40N","S57R","N67D","K71E"],"vif":["R19K","K36N","H48N","I87V","R92G","Y110H","N140S","R158K","I159T","K160R","K167Q","R173K","K179R","R183H"],"vpr":["T49H","T59A","I60L","I63L","I70V"],"vpu":["L2S","Y27F","L33I","K35R","L42V","E58D","L82V"]},"labels":{"aa":"INT: K14R, V201I, R284G; RT-p51: T35K, K122E, I178L, T200A, Q245E, Q334N, E344D, M357L, A376C, M377L, R390K; RT-p66: T35K, K122E, I178L, T200A, Q245E, Q334N, E344D, M357L, A376C, M377L, R390K; gp120: R18K, T22A, N66T, T104-, -107K, -109V, -110T, -111Y, -112N, N113G, -114T, K142Q, N160K, S161G, Y163G, R164K, L165N, I166S, N167S, T191A, Y195F, T216S, E241R, E262Q, D308N, K309N, N311T, Q315H, G318S, A322E, H324Y, -328R, K329-, T334A, S335P, R351G, -368N, -372G, -373S, -374N, -375S, -376N, -377S, -385T, A412E, L424I, -433K, T437E, V468I; gp41: V7A, A14L, I24V, L54M, K77R, D109E, D113Q, M118L, Q119E, K144R, N160S, S165T, I171L, S205L, I264L, L265S, R277S, G293C, N320Y, I321L, F340L; nef: G3S, W5L, S9K, P14S, S45T, A50E, C55Q, K92R, D161N, C163S, Q188M, H191R, R194M; p17: G11E, K18R, E42D, D55Q, L75I, F79Y, G91E, M115T, E122-; p24: L6M, T171V, T178S, T200I, R203K, A204G, P207S, S210T; p6: F17T, E21P, T23A, A25P, P26A, K27E, -35A, P37-; p7: I12T; pro: K41R, Q61E; rev: A11E, I18T, S54K, S56G, T62A, H82S, G111V, S112F; tat: M1T, K19A, K40N, S57R, N67D, K71E; vif: R19K, K36N, H48N, I87V, R92G, Y110H, N140S, R158K, I159T, K160R, K167Q, R173K, K179R, R183H; vpr: T49H, T59A, I60L, I63L, I70V; vpu: L2S, Y27F, L33I, K35R, L42V, E58D, L82V"}}},{"name":"KF835534","node_attrs":{"div":0.15471999999999997,"accession":"KF835534","clade_membership":{"value":"CRF08_BC"},"country":{"value":"CN"},"date":{"value":2007.0},"Strain_name":{"value":"07CNYN355"},"LANL_subtype":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["T200C","G224A","A278G","A410G","G413A","A418G","C435T","A500C","G603T","T662C","A666T","T667G","C679T","A680G","C688A","G701-","G702-","G703-","A704-","-711G","-712A","-713G","-714A","G717A","C747G","T748C","C749T","T767C","T902C","T992G","G1005C","A1112G","C1229T","A1307G","T1322C","G1450A","A1461G","A1588G","A1712T","-1729T","-1730G","-1731A","G1760A","A1766G","G1804A","C1826A","T1828G","A1982G","C1986A","T1987G","A2018G","G2182A","T2209C","G2210A","T2269A","C2301G","C2326T","C2419T","T2579A","C2671T","A2716G","C2749T","T2824C","T2845G","A2875G","A2884G","G2925A","A2962G","C2968A","G3004A","T3040G","A3079G","G3091A","G3154A","A3247G","A3379G","A3449T","T3496C","C3499A","C3504A","A3508C","G3532A","C3610T","G3685A","G3737A","T3754C","G3756A","T3976C","T3977C","C4021A","G4027A","A4114C","A4181C","A4183C","T4405A","C4608A","T4679C","G4689A","T4694G","C4754A","T4827C","A4870G","T4976C","C5019T","T5028C","A5082G","G5140A","A5267G","A5272G","T5311C","T5319A","G5336A","A5426G","G5431A","C5448A","A5495C","C5508A","T5584C","G5614A","A5622T","-5626G","-5627T","-5628A","T5670A","A5685G","T5704C","T5727C","A5824C","A5825G","A5830G","T5850C","T5857C","G5858A","G5862A","G5865A","C5911T","G5935A","T6024C","A6026C","T6076G","C6097T","A6119G","G6158A","A6160T","-6165C","A6167G","A6174T","A6177G","T6178G","T6187C","A6189G","-6195G","-6196A","-6198C","-6200T","-6201G","-6202C","-6203T","-6204G","-6205G","-6206G","-6207A","-6208T","-6209C","-6210T","-6211A","-6212C","-6213A","-6214A","-6215T","-6216G","-6217G","-6218G","-6219A","-6220G","-6221C","-6222A","-6223T","-6224G","-6225C","-6226A","C6247T","C6252T","T6263G","A6265G","G6274A","A6278G","A6288C","T6307G","A6319C","T6335A","T6340C","A6395T","A6413C","C6441T","A6458G","A6462C","G6463A","C6465T","A6466G","C6483A","C6488A","T6490G","G6498C","A6502G","G6577C","A6648C","G6653A","T6654C","A6684C","C6774G","T6778G","A6785C","G6801A","A6811G","A6849C","A6850C","G6871A","G6947A","C6955G","-6956T","-6957C","-6958T","-6968T","-6969A","-6970C","-6972T","-6973G","A6974C","-6977A","-6979T","-6980G","-6981G","-6982T","-6983A","-6998G","-6999G","-7000A","-7001A","-7002C","-7003A","-7004A","-7005A","-7006C","C7018T","G7033A","A7108G","C7124T","A7129C","A7152G","-7153A","-7156T","G7198A","A7244C","G7268A","G7309A","A7390G","T7400C","G7440A","A7542G","C7574G","C7576T","C7606T","C7625T","A7627T","G7628A","G7677A","A7732G","A7735C","A7744G","G7764A","T7765A","A7771C","A7773G","G7790A","C7926T","G7936A","G7947A","A8055G","G8130A","C8131G","C8210T","A8219T","C8220T","G8243A","T8257C","G8273A","A8295G","A8297G","T8366A","G8432A","T8440C","A8461G","A8465G","T8505A","T8597G","A8643G","T8711C","A8726G","G8729A","A8780G","A8801G","A8804G","G8808A","C8813T","A8837G","A8906T","G8917C","G8923A","C8930T","C8934T","C8966-","A8967C","-8970A","-8971A","-8974G","-8977A","-8978G","-8994G","C9006G","T9068C"],"INT":["M84I","K136H","A278D"],"RT-p51":["D39N","T69S","C162S","D250E","R277K","D291E","H315Q"],"RT-p66":["D39N","T69S","C162S","D250E","R277K","D291E","H315Q","T470N","E471D","V548I","S554N"],"gp120":["V2M","G3E","G4E","V57A","M58L","D74E","K89E","E102N","-105D","-106V","-107I","N108R","-109N","-110G","-111S","-112S","-114R","A133V","L137V","K142E","Y145S","-157D","N158D","D159E","T181S","I187L","A196V","N202D","K203T","T204M","P210Q","Q212K","S215T","E241G","E265A","V267T","K277T","A307G","D308E","N311H","R316K","K332T","G365S","-368M","T371-","N432K","-433R","T436N","K464Q","G472R"],"gp41":["R46K","Q80R","L91V","Q108Y","D109T","S125N","K144S","S154K","K156N","N157S","D163N","T208I","G215E","N251S","R276Q","T306F","G314R","G324R","N331S","I332V"],"nef":["S8R","V33A","H40R","C55S","F85L","I101V","A156T","Q188H","R192T","R194K"],"p17":["H28R","A90S","I111C","A118E","-124I","-125S","V128-","S129-"],"p2":["-7T","T8N","S10A","A11V","I13-"],"p24":["L6A","H87Q","A92P"],"p6":["F17L","-18P","-19T","K27R","R42K","L50W"],"p7":["K41R"],"pro":["L10M","I62V","P63Q","T74A"],"rev":["E30K","Q95E"],"tat":["Q17R","N24K","K40T","S70P","P73S","R76Q","D80N"],"vif":["L8M","A35T","H56Q","N95S","I166V","G185E"],"vpr":["T55A","F72Y"],"vpu":["D3N","A5D","-7G","A8L","V9A","G10V","N73R","R75G"]},"labels":{"aa":"INT: 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I166V, G185E; vpr: T55A, F72Y; vpu: D3N, A5D, -7G, A8L, V9A, G10V, N73R, R75G"}}}]}]}]},{"name":"CRF08_BC_NODE_0000012","node_attrs":{"div":0.11724,"clade_membership":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["-281C","C3405T","G4027A","A4684G","C5579T","G6773A","G6947A","-6957T","-6977A","G7150A","A7155C","A7269C","T8213G","A8746T"],"INT":["M84I"],"RT-p51":["A437V"],"RT-p66":["A437V"],"gp120":["E307K","G365S","-368F","T436D","E472A"],"gp41":["F304V"],"p2":["S10-"],"vif":["K33R"]},"labels":{"aa":"INT: M84I; RT-p51: A437V; RT-p66: A437V; gp120: E307K, G365S, -368F, T436D, E472A; gp41: F304V; p2: S10-; vif: 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I63M, Q77H; vpu: D3N, -7G, I20V, W41R, K44Q, R73N, D81E"}}}]}]},{"name":"CRF08_BC_NODE_0000017","node_attrs":{"div":0.12085,"clade_membership":{"value":"CRF08_BC"}},"branch_attrs":{"mutations":{"nuc":["G695T","-697A","T698C","-712A","-713G","-714A","A812G","T1628G","C2301A","G3004A","A3508C","G3756A","G3916A","A4677G","A5825G","A6061T","G6186A","-6198C","-6200A","-6201C","-6203A","-6208A","-6209G","-6212A","-6215A","-6217G","G6227-","A6319C","A6458G","A6502G","-7153A","G7212A","A8032G","T8711C","G8729A","A8823G"],"RT-p51":["T69S"],"RT-p66":["T69S","E471D","S554N"],"gp120":["K69N","N202D","F368N","-370S","S453N"],"nef":["N161D"],"rev":["T62A"],"vif":["I31V"],"vpu":["A5E"]},"labels":{"aa":"RT-p51: T69S; RT-p66: T69S, E471D, S554N; gp120: K69N, N202D, F368N, -370S, S453N; nef: N161D; rev: T62A; vif: I31V; vpu: 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p17: E93D, A121D, E122K; p6: S14G; rev: P100H; tat: 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V112A, I162T, G163A; RT-p51: T27A, V106A, K173N, V179D, D324E, S376A, M377Q; RT-p66: T27A, V106A, K173N, V179D, D324E, S376A, M377Q; gp120: V37M, L57P, K69E, E102Q, -124G, N128K, A133V, K141Q, Q142K, K143R, Y145E, L147F, R150K, N159K, S161Q, A176T, N201R, N202D, A253V, Q259H, Q262E, I279V, D297N, Q300L, K309Q, R316K, S318G, K320T, K332R, R351G, G361K, Y367L, N368F, -370G, -371T, -372N, -373S, -374S, -375S, -376D, -377S, -378I, L388I, K418R, N420K, N432T, E433T, N435G, T437N, T439I, K474R; gp41: S107T, H108L, T109Q, T128S, S165T, A245V, A268T, V301I, D305N, A306V, V321A; nef: E24R, G31E, A60T, K104Q, Q107R, P150Q, R151G, H171Y, R194M; p17: V35L, R43K, E52K, S54P, E55K, Q65H, E73K, A90Q, I111S, Q117K; p2: S10N; p24: T116A, S120N, T148S; pro: V15I, G16E, I62V; rev: E10D, I21F, T62S, S86N, C89G, S106P; tat: M1L, K19E, K40T, N67I, I69V; vif: I64M, R92K, L109M, A129G, R159I; vpr: Y45H, T59A, I63L, N91P; vpu: A3T, R37K, I46L, 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A15V"}},"children":[{"name":"MZ063029","node_attrs":{"div":0.19908,"accession":"MZ063029","clade_membership":{"value":"CRF118_BC"},"country":{"value":"CN"},"date":{"value":2017.0},"Strain_name":{"value":"YN287_168"},"LANL_subtype":{"value":"CRF118_BC"}},"branch_attrs":{"mutations":{"nuc":["A368G","G480A","T539C","A548G","G579A","C590T","G603A","A653G","T777A","T782C","A860G","A932G","C968T","T974C","A980G","C1118T","A1307G","G1313A","A1346G","A1433G","-1449A","-1450G","A1495G","G1498A","A1543G","A1644C","A1725G","-1729T","-1730C","-1731G","-1732G","-1733G","-1734G","T1735A","C1736G","G1737-","A1738-","G1739-","G1740-","A1741-","G1742-","C1744T","C1753T","A1772G","C1903A","G1906A","A1982G","C1985T","T2013C","T2158C","T2257C","C2326T","T2494C","A2551G","C2584T","C2589T","A2612C","C2626A","A2767G","G2788A","G2875A","G2925A","G2946A","A2951G","A3001G","G3016A","A3019G","T3022C","A3031G","G3091A","T3133C","C3140T","A3200G","G3264A","A3265G","A3283G","C3294T","T3349C","G3385A","G3494A","C3499T","G3523A","G3529A","T3559C","T3628C","A3684G","T3721A","C3779T","G3791A","A3805G","G3825A","T3844A","A3866G","C4015T","A4078C","T4085C","C4141T","G4145A","T4153C","A4213G","A4528C","A4555G","A4571C","G4582A","T4640C","A4643G","G4802A","A4862G","C4898T","T4907C","T4911C","C4937T","A4952T","C4967G","C4972G","C4996T","A5050G","C5052A","G5140A","A5148T","A5159G","C5160T","G5167A","C5275T","A5293G","A5360G","C5397T","T5466C","T5480C","T5483C","A5492T","A5495C","C5513A","C5536A","A5537G","G5538A","A5545G","A5602T","A5612C","C5621T","C5679T","T5686A","A5689T","T5707C","G5784A","A5790-","C5792G","C5795G","-5799T","-5800A","-5801T","-5802C","-5803A","-5804A","-5805C","-5806A","-5807A","-5808T","C5827A","A5935G","G5948A","A5957G","C5958A","A5962G","T5964G","A6030G","T6046C","T6101A","A6160C","-6165C","-6167G","-6177A","T6181G","A6183C","T6184C","T6187A","C6189T","A6192G","A6194G","-6195G","T6199-","-6205G","A6209C","-6210C","-6211G","G6212A","A6214G","-6215C","C6216A","-6217A","G6221A","A6222T","G6263T","A6268G","A6281C","A6288C","G6323A","T6325G","T6328C","G6329T","A6330C","A6333G","A6335G","T6337G","T6340C","A6395T","A6425G","G6451A","G6569A","C6592T","G6601A","C6612T","T6643A","A6646T","A6655G","A6659G","A6661C","A6723T","G6743A","A6780G","T6787G","G6801A","G6802T","G6806A","A6840C","A6847C","A6855C","C6888T","T6892C","A6934G","T6958-","G6963A","-6968A","A6969G","-6973G","-6974T","-6980G","-6981C","A6992T","G6993C","T6994A","G7026A","C7089A","A7144G","A7153C","A7154C","-7162G","G7166-","A7167-","G7168-","A7169-","T7170-","A7171-","G7197A","G7256A","A7268C","G7285A","G7428A","G7628A","T7642G","G7677A","T7681C","T7774C","T7796A","C7825T","T7876A","A7929T","C7932T","A7938C","A7950C","A8006G","T8008G","A8018C","T8035C","T8097C","T8103C","A8118C","G8130A","A8152G","T8164C","A8188G","C8196T","G8208A","T8215C","G8216A","T8292G","A8305G","G8385A","A8396T","G8404A","G8407A","A8413C","C8460T","G8479A","C8483T","A8488C","A8494C","T8501C","A8517C","G8518A","T8672G","C8747T","T8789C","A8793C","G8794A","A8824C","C8853T","G8888A","G8923A","G9037C"],"INT":["D6N","S17N","I31V","A124T","K266Q"],"RT-p51":["T165I","K173Q","D177E","R277K","R284K","T286A","T369A","R390K","T400I"],"RT-p66":["T165I","K173Q","D177E","R277K","R284K","T286A","T369A","R390K","T400I","V467I","K530R"],"gp120":["A32T","T35D","V37G","E59G","L83I","E102D","-104T","-105D","-112G","-113T","-114K","V137L","K143Q","Y145S","D157K","E158N","N159S","S161G","T181S","T191A","N212T","E239K","A253V","T269A","Y290F","D294E","D297N","K309R","N311K","R316N","-328T","K329-","K332R","N334A","S335P","T345I","N369D","-374T","-375S","-376R","-377Y","-378N","-379A","-380T","-381N","-382S","R391K","A412E","N434T","N435G","T436R","T437G","R448K","V468I","T472P"],"gp41":["S42N","H108Q","D113E","S125N","S165T","H209L","T210I","N212T","H216P","I235V","N239H","L265S","V267A","E272A","R276H","T298I","S302N","D305N","L330R"],"nef":["A15T","E18D","R21K","R22Q","E24A","H40Y","S46N","D49A","N51T","R59Q","R151Q","D161A","H171Y","R194K"],"p1":["I5L"],"p17":["H28R","G49S","V82I","A90K"],"p2":["G9S","S10N"],"p24":["S16T"],"p6":["R16G","-18G","-19E","E20I","E21T","T22P","T23V","A25-","P26-"],"p7":["K10R","R11K","K26R"],"pro":["D35E","M36I","I62V","P63S","I72T"],"rev":["D7E","S8D","E30D","H53R","S54A","E57A","F63L","I102V","S106P","T114A"],"tat":["L35P","V36A","Q39L","K40T","S46Y","Q54R","R57G","I74L","P75S","T77P","T81P"],"vif":["K122N","H127Q","A129G","A137V","K155R","P156T","G185E","T188S","H192Y"],"vpr":["Y15F","T19V","I63M"],"vpu":["Q2P","T5I","I28L","L74I"]},"labels":{"aa":"INT: 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E30D, H53R, S54A, E57A, F63L, I102V, S106P, T114A; tat: L35P, V36A, Q39L, K40T, S46Y, Q54R, R57G, I74L, P75S, T77P, T81P; vif: K122N, H127Q, A129G, A137V, K155R, P156T, G185E, T188S, H192Y; vpr: Y15F, T19V, I63M; vpu: Q2P, T5I, I28L, 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P119S, I135V, T218I; RT-p51: Q245T, P272Q, E312D, E404D; RT-p66: Q245T, P272Q, E312D, E404D, Q520H; gp120: T3A, D4E, S109D, T115S, -125E, -126I, K141R, H302Y, S306N, K308T, Q315-, T330-, -368D, -371T, -373G, -374T, -376G, -379N, P389Q, R397N, R412E; gp41: Y108F, S192A, V194L, I210T, I266V, Y284H, G326I; nef: A50S, P53E, F143Y, S151A, N157T, F202Y; p17: L34I, I61M, K69N, L107M, N109K, Q127K; p24: M96L; p6: S24P, P25S, -26L; p7: K7R; rev: V102T; tat: T57A, S75P; vif: K36T, D61E, T155N, T180I; vpu: I13V, A19V"}},"children":[{"name":"AF377959","node_attrs":{"div":0.11784999999999998,"accession":"AF377959","clade_membership":{"value":"CRF18_cpx"},"country":{"value":"CM"},"date":{"value":1997.0},"Strain_name":{"value":"CM53379"},"LANL_subtype":{"value":"CRF18_cpx"}},"branch_attrs":{"mutations":{"nuc":["A374G","A386G","A390G","A412G","C471A","A492C","C493A","G495A","A500G","G519A","G524A","A562G","A585G","C586T","A656G","G665C","A666-","G667-","C668-","A689G","C771A","C772G","A815G","T852A","C947T","A1002T","A1097T","C1103T","T1229C","G1271A","A1278G","A1279G","G1313T","C1350G","-1455G","-1456C","-1457C","C1514T","G1690A","C1745-","-1747C","-1748C","C1751T","T1752C","G1760A","T1792C","A1793G","A1839G","A2007G","G2155A","G2173A","C2199A","T2338C","A2395G","A2419G","C2575T","A2578G","A2626G","A2710T","A2727G","A2743G","C2822T","A2842G","G2921A","C2985A","A3151G","G3168A","A3230G","C3252T","C3266T","A3280G","C3294T","T3358C","G3398T","T3449A","T3541C","C3688G","G3756A","T3757G","A3768G","G3880A","G3891A","A4225G","T4234C","A4255G","A4376G","G4388T","A4423G","A4427T","A4608G","G4616A","A4692G","A5187T","C5221T","G5305A","A5312G","C5383T","A5396G","T5424C","A5460G","C5480A","A5545G","C5551T","A5622C","T5641C","T5687A","C5704G","-5739A","A5792G","G5793A","A5795G","T5797A","A5803T","C5806-","T5807-","-5809C","-5810T","-5811T","A5863G","G5948T","A6001G","C6116T","C6165T","-6167A","-6170A","-6171T","-6172A","-6175C","A6176T","-6180A","A6182G","A6186C","C6189A","T6193G","-6198C","-6208T","A6209G","-6215G","-6216A","-6217G","-6218A","-6219A","-6220C","-6221A","-6222G","-6223A","T6252C","A6263C","A6273G","C6318A","A6324G","A6326G","T6328G","A6333G","T6340A","A6471G","A6505C","A6648T","A6664G","A6693G","C6721T","C6752A","A6759C","T6766G","G6774A","A6791G","C6797T","G6821A","A6822C","C6850T","C6919T","A6944-","A6945-","T6946-","A6947-","G6948-","T6949-","C6952A","-6960G","-6961C","-6963C","T6964C","-6969A","-6970T","A6971G","-6976C","-6977A","-6982C","-6988C","-6989T","-6991C","-6993C","-6994A","-6996T","G6998A","A7000T","-7004G","-7005A","-7006T","-7007A","-7008C","-7009T","G7040A","T7075C","C7078T","A7095G","A7106G","A7115G","A7153G","-7154T","T7156A","-7159A","-7162G","-7163G","-7164A","-7165G","A7186G","G7198A","C7411T","C7561A","A7570G","T7604A","C7645T","T7666G","C7688G","C7762T","A7782G","T7801C","A7891G","G7892A","C8005T","C8048G","A8099G","G8110A","G8130A","C8146T","C8149T","T8164C","C8165T","T8166A","G8173A","G8185A","G8222A","G8264A","A8271G","T8280C","A8284G","T8292G","T8384C","T8451C","C8500A","T8501G","T8507C","A8653G","T8675C","G8816A","C8913A","G8917A","A8928C","G8933A","G8968A","A9082G"],"INT":["S39N","V112I","I201V","A205S","I218L","D278G","V281M"],"RT-p51":["T35K","K211R","P243S","V276I","A297E","R358K","S379G","T386I","T400I","V435L"],"RT-p66":["T35K","K211R","P243S","V276I","A297E","R358K","S379G","T386I","T400I","V435L","L452I","S554K","K558R"],"gp120":["A32S","T104I","-105N","-106I","T112K","-116E","-121M","-122E","-123N","-124R","I133T","I137L","K140R","P155Q","N159-","N206S","K265V","H280R","Q300K","Y302S","N304K","R307K","T313A","E316-","V317-","V318-","T319S","Q320K","L321V","G322A","K323T","H324Q","-326G","-328K","-330K","I332N","N364-","S365-","-369S","-370T","-372N","-375N","-377S","-378N","-384D","V396I","N414S","I421V","-434S","-437E","-438V","-439T"],"gp41":["S101T","D110E","D121E","Q129E","N160S","V197I","L249V","L288Y","V307I","V321I","Q323R","I326T","L330R"],"nef":["I10V","Q104R"],"p17":["I19V","K26R","L46I","T53Q","A54T","E62K","K76R","T84V","K109-","S111N"],"p2":["N9H","-12N"],"p24":["V11I","S41T","I91F","N183G"],"p6":["R4K"],"pro":["K14R","K70R"],"rev":["R53C","P67R","D84G","D88N","P100S","Q101*","S106L","V109I","G113R"],"tat":["P3S","N7S","P59S","L68P","Q87*"],"vif":["M8V","T36A","I154L"],"vpr":["N28I","I70V","A93V"],"vpu":["-5H","F27Y","L33V","E60D","L61T","S62-","N69V","-70E","-71M","-72G","-73N"]},"labels":{"aa":"INT: S39N, V112I, I201V, A205S, I218L, D278G, V281M; RT-p51: T35K, K211R, P243S, V276I, A297E, R358K, S379G, T386I, T400I, V435L; RT-p66: T35K, K211R, P243S, V276I, A297E, R358K, S379G, T386I, T400I, V435L, L452I, S554K, K558R; gp120: A32S, T104I, -105N, -106I, T112K, -116E, -121M, -122E, -123N, -124R, I133T, I137L, K140R, P155Q, N159-, N206S, K265V, H280R, Q300K, Y302S, N304K, R307K, T313A, E316-, V317-, V318-, T319S, Q320K, L321V, G322A, K323T, H324Q, -326G, -328K, -330K, I332N, N364-, S365-, -369S, -370T, -372N, -375N, -377S, -378N, -384D, V396I, N414S, I421V, -434S, -437E, -438V, -439T; gp41: S101T, D110E, D121E, Q129E, N160S, V197I, L249V, L288Y, V307I, V321I, Q323R, I326T, L330R; nef: I10V, Q104R; p17: I19V, K26R, L46I, T53Q, A54T, E62K, K76R, T84V, K109-, S111N; p2: N9H, -12N; p24: V11I, S41T, I91F, N183G; p6: R4K; pro: K14R, K70R; rev: R53C, P67R, D84G, D88N, P100S, Q101*, S106L, V109I, G113R; tat: P3S, N7S, P59S, L68P, Q87*; vif: M8V, T36A, I154L; vpr: N28I, I70V, A93V; vpu: -5H, 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F15-, G16-, F17S, E19V, I21E, A22I, -23A, K33Q, L38M, S51L; p7: R11K; pro: L10I, K14R, I15V, G16E, E35T, I62V, C67Y; rev: I59V, P67S, D84G, P100S, T102E, V104L, A108T; tat: Q35P, E71K, P73S, T77A; vif: T67I, M109L, D113A, T151R, I154L, R167K, M189T; vpr: N48D, E58I, I70T, I83V; vpu: -5Q, F27L, I28V, L34R, K37R, E44D, -67V, -68G, -70Y, -71N, -72L, -73G, H74Y, N75-, P76-, G77-, 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S16T, I58V, A177G, T178S, E180D, R203K, A207S; p6: F17V, E29D, T39A, K42R, S47N; pro: I36-; rev: Y28C, R48K, R50K, D88N, S92-, G93-, T94-, Q95-, T102S, V104M, S107P; tat: P6F, E9A, K29E; vif: V31I, K33R, A35V, F39S, E45Q, E61K, K63T, E78K, K92E, E117D, I120V, N140S, R167Q, Q178R, G182D; vpr: N28T, E58G, H77Q, V84I, S96F; vpu: -5M, V10I, V21I, I28L, D40E, L42-, I43-, E44-, R45-, I46-, R47-, D48-, 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D6E, E13D, L74I, I201V; RT-p51: D123E, T173K, K174E, L283I, A286T, H334Y, R390K, N418S, H421Y, V435A; RT-p66: D123E, T173K, K174E, L283I, A286T, H334Y, R390K, N418S, H421Y, V435A, L452I, L469I, S491T; gp120: D21N, A32S, K37S, -105N, -106V, I133V, I137L, K143Q, -157S, -161N, E183D, N203Q, R307K, Q315H, K323E, -328K, I332V, V402T, I411S, K433Q, -437N; gp41: K172R, N195K, I222T, I264L; nef: V30A, G31-, V33E, D36E, L37E, D38Q, A42S, I43V, S45N, C55Y, A60E, Q61-, Y115F, F121L, Y135F; p17: L68V, D121A; p24: M96I, G116R, E128D, S200N, A207P; p6: N3K, F15L, -23P, L35K, L38F, T39S, *50S; pro: E35D; rev: A15T, K30E, E54A, N82T, A108V; tat: Q24N, G61D, Q76R; vif: M109L, K122N; vpu: P3D, F27Y, L33I, -67M, -68G"}},"children":[{"name":"AY586540","node_attrs":{"div":0.12968,"accession":"AY586540","clade_membership":{"value":"CRF18_cpx"},"country":{"value":"CU"},"date":{"value":1999.0},"Strain_name":{"value":"CU76"},"LANL_subtype":{"value":"CRF18_cpx"}},"branch_attrs":{"mutations":{"nuc":["G301A","G378A","C379A","G407A","A437G","A461G","T485G","A509G","C531T","G534T","G537A","C558A","A605G","A606G","A699G","A762G","G776A","C917T","G977A","A992G","C1005G","C1040T","G1090A","C1115T","C1211T","G1298A","A1370G","G1404A","C1415T","G1430A","A1442T","C1449A","-1452A","-1453C","-1454C","C1536A","G1589A","T1598C","G1619A","A1691G","C1767T","A1775G","A1776G","G1779A","G1781A","A1782-","A1784-","A1840G","G1981A","A2007G","A2215G","A2242G","A2368G","G2498A","T2521C","G2714C","T2824G","A2887G","G2902A","C2985T","G3004A","G3010A","A3037G","G3094A","A3136G","G3169A","A3193G","A3196G","C3253T","C3266T","T3355G","A3357T","A3364G","T3368C","A3463G","G3477A","G3494A","G3523A","C3533G","A3556G","A3562G","A3565G","T3566C","C3567A","A3568G","C3682A","T3754C","G3766A","A3768G","G3772A","C3773T","T3946C","T3968C","T3985G","T4015C","T4073C","C4075T","A4076C","A4162T","G4228A","T4276C","A4303C","A4391T","C4396A","A4414C","T4537C","A4546T","T4656A","G4695A","G4696A","G4769T","A4774C","G4784A","G4816A","A4861G","C4914T","A5030T","A5140G","T5203C","G5212A","C5237T","C5336A","G5363A","A5462G","C5480A","G5548A","A5566C","C5579T","T5600-","A5607G","A5611G","T5612G","A5613G","A5619T","-5620G","A5629G","C5631T","G5635A","A5652T","G5668T","T5669G","A5706T","A5728G","A5734T","A5770T","T5781G","A5787C","-5791G","C5792A","C5793G","C5797T","T5799A","G5800T","T5801C","G5803A","G5808T","-5812A","-5813T","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","C5851G","-5866T","A5867C","G5907A","A5916T","T5917A","A6008G","A6030G","C6100T","-6175T","A6176T","A6182G","A6183G","T6184A","T6187C","C6189A","A6194T","-6197G","-6198C","-6200A","-6201G","-6202C","-6203A","-6204A","-6205T","-6206A","-6207G","-6208T","-6209A","-6210G","-6211C","-6212A","-6213T","-6214A","-6215A","-6218G","-6219C","-6220T","-6221A","-6222C","-6223A","-6225A","-6226A","-6228A","-6229A","A6248T","A6249T","A6263G","A6275C","C6289T","T6307A","C6317T","T6322A","A6323G","-6327G","A6332T","G6339A","T6382C","G6391A","A6395T","C6463A","A6464C","C6489G","C6496T","C6545T","A6616G","A6637G","A6639C","A6649C","A6654C","A6669G","A6684G","T6772C","G6774A","G6781T","A6800G","A6822G","G6848T","A6935G","A6936C","C6938T","-6961T","A6962G","-6966C","-6968T","-6969G","-6970G","-6971A","-6972T","-6973A","-6974A","-6975A","-6976A","-6977C","-6978T","-6979A","-6980G","-6981A","-6982T","-6983A","-6984A","-6985C","-6986A","-6987C","-6988T","-6989A","-6990C","-6991A","-6993A","-6994T","-6995A","-6996C","-6997G","-6998C","-6999A","A7004G","A7005G","C7020A","T7107C","A7123G","T7142C","G7145A","A7148C","-7154G","A7183G","G7198A","T7222C","G7285A","A7306C","A7315G","G7366A","G7369A","C7463A","A7591G","T7622A","T7627C","G7640A","A7691T","A7701C","T7702A","A7782C","T7796A","T7888G","T7921C","G7944T","A7974G","C8005A","G8030A","C8044G","T8097G","C8123T","C8146T","A8152G","T8155C","T8171G","G8234A","T8235C","G8264A","G8276A","G8329A","C8342T","G8354A","A8370C","C8413A","T8414A","C8415G","C8416A","G8418C","C8419T","G8421C","A8423T","A8425G","G8427A","G8428C","A8429T","G8430C","A8432T","G8433C","A8434C","A8455G","C8456A","A8459G","A8465G","T8470G","A8482G","G8502A","T8505C","T8507C","C8509G","T8511C","G8513A","-8521A","-8522G","-8523G","T8546C","G8558C","A8576T","A8647T","C8650T","A8652C","A8660G","A8662C","C8676T","C8684T","C8702T","A8739G","A8750C","A8756C","G8774A","C8790T","C8831T","G8852A","T8887A","A8904G","G8933A","G8936A","A8977G","C8978A","A8979C","C9155T","A9159T","T9160A"],"INT":["C65R","F100L","I101L","T206S","D207E","L213F"],"RT-p51":["V135I","E207Q","A297V","Y421F"],"RT-p66":["V135I","E207Q","A297V","Y421F","R461K","V467I","Q480E","T491Q","D529E","K558R"],"gp120":["N5H","R18K","N21V","N52D","E59G","T110G","T112N","N113T","T115A","-116S","-117N","-118S","-119S","-120I","N159D","T181S","T204P","T212R","K261T","K262T","K265N","N267T","N272S","K277R","K307E","E309D","V318A","E323G","V332Y","N361A","-378N","-379K","-380T","-382G","-383T","-384W","P389Q","V418S","F430L","V431I","Q433H","-438V","-439T","K474R"],"gp41":["L54M","S107T","D113N","I130L","N133T","N160T","S165T","R214L","E224G","A243T","D247E","L265W","L277S","L290V","V311T","V321I","A325T"],"nef":["I10L","P24Q","P25E","A26L","A27P","K28R","G29T","A30P","-31P","Q38R","V43G","N47S","A54T","Y55H","A56G","W57R","-61E","Y102F","S103F","Q107P","I133V","P150S","S151N","M182K","T188A","K192R"],"p17":["A15K","P66S","A67S","V68I","L75I","R91G","L107I","T122A"],"p2":["Q6H","-10T","A11N"],"p24":["M15I","P92A","E98D","S120N","G225S"],"p6":["P30S","K33-"],"p7":["L24I"],"pro":["K70R"],"rev":["R17S","T32A","R53S","S61N","R66G","S92F","P100S","S103P","V108G"],"tat":["K29R","A58T","N64H","N78S","G79W"],"vif":["L24I","G37N","K63T","R77K","K92R","H110Y","T151A","E185G"],"vpr":["H45Y","H77Q"],"vpu":["L4F","-5E","S8G","V10I","V21C","R41G","I43F","N55Y","D58E","V65M","L82V"]},"labels":{"aa":"INT: C65R, F100L, I101L, T206S, D207E, L213F; RT-p51: V135I, E207Q, A297V, Y421F; RT-p66: V135I, E207Q, A297V, Y421F, R461K, V467I, Q480E, T491Q, D529E, K558R; gp120: N5H, R18K, N21V, N52D, E59G, T110G, T112N, N113T, T115A, -116S, -117N, -118S, -119S, -120I, N159D, T181S, T204P, T212R, K261T, K262T, K265N, N267T, N272S, K277R, K307E, E309D, V318A, E323G, V332Y, N361A, -378N, -379K, -380T, -382G, -383T, -384W, P389Q, V418S, F430L, V431I, Q433H, -438V, -439T, K474R; gp41: L54M, S107T, D113N, I130L, N133T, N160T, S165T, R214L, E224G, A243T, D247E, L265W, L277S, L290V, V311T, V321I, A325T; nef: I10L, P24Q, P25E, A26L, A27P, K28R, G29T, A30P, -31P, Q38R, V43G, N47S, A54T, Y55H, A56G, W57R, -61E, Y102F, S103F, Q107P, I133V, P150S, S151N, M182K, T188A, K192R; p17: A15K, P66S, A67S, V68I, L75I, R91G, L107I, T122A; p2: Q6H, -10T, A11N; p24: M15I, P92A, E98D, S120N, G225S; p6: P30S, K33-; p7: L24I; pro: K70R; rev: R17S, T32A, R53S, S61N, R66G, S92F, P100S, S103P, V108G; tat: K29R, A58T, N64H, N78S, G79W; vif: L24I, G37N, K63T, R77K, K92R, H110Y, T151A, E185G; vpr: H45Y, H77Q; vpu: L4F, -5E, S8G, V10I, V21C, R41G, I43F, N55Y, D58E, V65M, 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N18K, I72V, L74I, I84M, I101L, K111T, I135V, Q136R, D167E, I203M; RT-p51: E6T, K11N, K20R, K22R, C38F, D123N, I135V, S162Y, T173A, K174N, D251A, K275Q, K277R, Q278H, K281R, D324E, S359A; RT-p66: E6T, K11N, K20R, K22R, C38F, D123N, I135V, S162Y, T173A, K174N, D251A, K275Q, K277R, Q278H, K281R, D324E, S359A, K461R, V466I, T468S, N519S, Q524E; gp120: L6M, D29N, V40I, N57I, H77Q, -111V, -112S, S114T, S115G, S116C, -117T, T118N, -119N, -120N, -121C, -122T, -123V, -124S, N128E, S130H, T135G, -137G, K139R, V154A, P155L, N157K, N158D, N159R, S160P, E162N, N167K, D251N, E262N, I281T, L289V, Y290V, A291-, T292-, G293-, I295-, N297D, I305V, G307R, T308K, D309N, N311T, N312D, R315H, A318T, R322K, K329T, K334Q, G338A, K361G, S365K, W367L, N368L, N372S, S373N, -375D, -376G, -377A, -378N, -379N, -380T, P389T, N432Y, N436T, R441T, G445R, D446N, E462K, L466I, E479G; gp41: V7M, A14T, K56R, R68K, V69I, W99*, D109N, E119D, N126K, E129D, I130T, N140S, A151S, D163S, K172R, A216V, R231K, D247E, Y257C, V264A, 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D62-"}}},{"name":"HQ385477","node_attrs":{"div":0.13649,"accession":"HQ385477","clade_membership":{"value":"CRF49_cpx"},"country":{"value":"GM"},"date":{"value":2002.0},"Strain_name":{"value":"N18380"},"LANL_subtype":{"value":"CRF49_cpx"}},"branch_attrs":{"mutations":{"nuc":["-152T","A304T","A356G","G394A","G407A","C417A","G452A","G455A","C467T","C531T","G534A","T536C","C537A","C539T","A557G","G582T","C603A","G612C","C626A","C679T","G687A","A705-","A706-","C707-","A708-","C710-","A711-","G712-","C713-","G715-","T716-","C734T","C773A","A774G","A869G","G906A","T936C","T974C","A1028G","T1063C","G1090C","A1176G","G1192A","G1232A","A1263T","G1271A","C1330A","C1351T","G1404A","C1406T","G1443A","T1444C","C1453-","C1454-","-1455G","-1456G","-1457C","-1459G","G1508A","T1547C","G1625A","A1657G","T1676C","C1682T","C1714T","A1740G","G1763A","T1791G","G1839A","G1845C","G1852A","G1927A","G1972A","A2002G","C2062T","A2154G","A2155G","A2161G","T2195C","C2199T","G2224A","A2226G","A2230G","C2238T","A2239C","A2317G","A2374G","A2395G","A2422G","C2449T","G2459A","A2463G","G2530A","C2575T","A2612G","A2615G","A2626C","A2627C","A2692G","A2794-","A2881C","A2918C","A2920G","A2938G","C2968A","G2972A","C3002A","A3103G","G3127A","G3151C","G3169A","G3173A","A3193G","T3260A","A3286C","T3399C","C3449T","A3454G","C3499T","T3542C","T3577C","C3688T","C3691T","A3709G","G3787A","G3859A","A3931G","A3989G","A4036G","C4043T","T4075C","A4096G","T4153C","A4372G","C4543G","A4567G","G4581A","T4656C","A4687G","A4775G","G4864A","G4975A","G5087T","C5162T","C5182A","A5210C","C5227T","T5239C","G5257A","A5268G","A5282T","A5290G","C5336T","G5448A","A5462G","A5463G","G5499A","C5513A","A5586G","T5604G","T5616C","C5627T","T5705A","G5737A","A5748T","A5760G","T5778C","-5790G","-5791G","-5792A","-5793C","G5803C","A5805G","G5808C","-5809C","-5811T","G5812A","-5816G","-5819T","A5839G","T5857G","C5859T","A5914G","A5935C","G5948T","G5963A","G5972A","A5995T","G6029A","T6046G","A6061C","T6067C","C6083T","T6166A","G6170T","C6177G","A6179G","A6182T","T6184A","C6190A","A6194T","-6195C","-6202T","-6203G","-6209A","-6214A","-6215C","-6216T","-6217G","-6219A","-6220C","-6223A","-6225A","A6253G","T6271C","A6272C","A6286G","C6289T","C6293A","T6295C","A6311G","C6317T","T6321G","C6401G","T6409C","C6483T","A6488T","A6489C","G6498C","T6504C","G6526C","T6531C","G6569A","G6575C","G6593C","A6594C","T6600C","G6605A","A6638G","A6640G","G6647C","G6655T","C6666T","T6745C","C6752A","C6758T","A6765C","G6771A","A6780C","A6820G","A6848C","A6850C","G6860C","A6862C","A6863G","C6864A","A6868G","C6874T","T6883G","G6886A","A6887C","C6888A","-6956T","-6961T","-6963G","-6965A","-6966G","-6967T","-6968T","-6969G","-6970G","G6972A","-6975G","A6989G","C6993G","T7087C","A7152G","A7153G","A7154G","A7157G","T7159G","A7163G","C7164A","G7195A","G7269A","G7281T","G7324A","G7343A","G7349A","C7393T","G7395A","C7597T","T7609C","G7658C","G7666A","G7669C","A7700T","A7722G","A7744C","A7761G","G7765A","C7874A","A7880G","T7912C","G7957A","G8050C","G8107A","A8130T","T8172A","T8176C","G8216A","G8219A","G8231A","G8234A","G8267A","T8280G","G8287A","T8302C","G8348T","C8354A","A8396G","G8402A","A8408T","C8491G","G8534A","T8568G","A8584T"],"INT":["I72V","P90S","R269K"],"RT-p51":["K20R","T35I","E44G","S48F","E122K","D123S","T173A","K174E","E177D","I178L"],"RT-p66":["K20R","T35I","E44G","S48F","E122K","D123S","T173A","K174E","E177D","I178L"],"gp120":["S1R","A2V","A32S","G37S","V40I","E59K","N64K","K69N","H77Y","-106L","-107N","N108S","A109T","-111N","-112T","S115T","-117A","-124D","I133M","-137G","R138Q","L147I","I153V","P155S","I156S","N161S","Q183E","P210L","E239K","E241Q","I242V","E247P","I249T","D251N","E265P","K267N","P271L","A288V","-294A","Q300K","H302Y","N304T","S306N","D309T","R315N","E332H","A336P","S337N","I343M","M344I","T345Q","S366T","N368Y","E370S","T371S","N372W","S373N","T374G","-375N","-376D","-377S","-385T","T433S","N434R","N435D","N436E","N437D","M447I","R472K","R476I"],"gp41":["A14T","G16R","R31K","E119Q","N122S","N140S","Q147H","D153G","L191I","I193V","F263L","H276L","D305N","A306T","A310T","V311I","A322T","F326C"],"nef":["N4K","M20I","A50S","L76V","Y81F"],"p1":["N9S"],"p17":["A15E","R20Q","Q28K","P66S","A67T","L68I","A83S","Q90K","E93Q","T115M","A118T","N124I","S126-","S127-","I128-","S129-"],"p2":["V7T","T10G","N11S"],"p24":["I15V","V59I","L111P","G120A","S149G","R154K","T178S","T200N","G225S"],"p6":["A12V","I21V","L38V"],"pro":["R14K","G16A"],"rev":["K24R","A37T","A68P","E87K"],"tat":["K29R","S46Y","G83D"],"vif":["K34R","R93K","R130K","R167N"],"vpr":["E55G","I60L"],"vpu":["A7V","L33Q","D44N","R47S","V65Q","E66N","N78D"]},"labels":{"aa":"INT: I72V, P90S, R269K; RT-p51: K20R, T35I, E44G, S48F, E122K, D123S, T173A, K174E, E177D, I178L; RT-p66: K20R, T35I, E44G, S48F, E122K, D123S, T173A, K174E, E177D, I178L; gp120: S1R, A2V, A32S, G37S, V40I, E59K, N64K, K69N, H77Y, -106L, -107N, N108S, A109T, -111N, -112T, S115T, -117A, -124D, I133M, -137G, R138Q, L147I, I153V, P155S, I156S, N161S, Q183E, P210L, E239K, E241Q, I242V, E247P, I249T, D251N, E265P, K267N, P271L, A288V, -294A, Q300K, H302Y, N304T, S306N, D309T, R315N, E332H, A336P, S337N, I343M, M344I, T345Q, S366T, N368Y, E370S, T371S, N372W, S373N, T374G, -375N, -376D, -377S, -385T, T433S, N434R, N435D, N436E, N437D, M447I, R472K, R476I; gp41: A14T, G16R, R31K, E119Q, N122S, N140S, Q147H, D153G, L191I, I193V, F263L, H276L, D305N, A306T, A310T, V311I, A322T, F326C; nef: N4K, M20I, A50S, L76V, Y81F; p1: N9S; p17: A15E, R20Q, Q28K, P66S, A67T, L68I, A83S, Q90K, E93Q, T115M, A118T, N124I, S126-, S127-, I128-, S129-; p2: V7T, T10G, N11S; p24: I15V, V59I, L111P, G120A, S149G, R154K, T178S, T200N, G225S; p6: A12V, I21V, L38V; pro: R14K, G16A; rev: K24R, A37T, A68P, E87K; tat: K29R, S46Y, G83D; vif: K34R, R93K, R130K, R167N; vpr: E55G, I60L; vpu: A7V, L33Q, D44N, R47S, V65Q, E66N, N78D"}}}]}]}]},{"name":"results/subtype_trees/J.nwk","node_attrs":{"div":0.08751999999999999,"clade_membership":{"value":"J"}},"branch_attrs":{"mutations":{"nuc":["C153T","-166G","-167G","A278G","-280G","A398G","A425G","A461C","T486C","A491G","A492T","A503C","A516C","A520T","T525C","A527C","C539T","A540C","T549A","C558A","A605G","G615A","T641C","A644G","A656T","T662C","G665A","A674G","C684-","G686-","A689-","C691-","C700A","G702A","G703A","A705G","G709A","C713T","-714C","C731T","A743G","C748T","A749G","A759C","T760C","A774C","A818G","G821A","T892C","G893C","T904C","C917T","G920A","C947T","C1005G","C1040T","A1067G","G1109A","C1118T","C1136T","T1143C","T1175C","G1199A","C1211T","C1247A","A1292T","C1299T","T1325C","G1339A","G1355A","C1406T","C1446A","A1448C","-1452A","-1459A","G1472A","C1478T","T1481C","G1489A","-1503G","-1504T","-1505T","A1529G","C1536A","C1541A","G1543A","T1547C","A1643G","A1657G","T1676C","A1776-","A1903C","G2201C","A2210G","C2263T","A2275G","C2326T","G2456T","T2476C","T2521C","A2579T","C2605T","T2620C","A2641G","T2653C","A2662G","A2674G","G2682A","G2683A","C2694T","A2707G","A2710G","A2713G","A2716G","C2749T","A2794G","G2821A","C2839A","G2842A","C2978T","A3019G","G3221T","C3224T","A3226G","A3280G","A3334G","G3379A","A3388G","G3398A","A3400G","T3436C","C3449A","A3487G","T3493G","T3497A","A3508C","T3530C","A3538C","C3545T","A3565G","C3567T","A3607G","C3610T","C3665G","A3676G","G3796A","G3859A","A4071T","C4072T","C4079T","T4135C","A4150T","C4181A","A4183G","G4264A","T4276A","G4354A","G4582A","G4642A","A4643T","T4652A","C4665T","T4674A","G4696A","T4701C","G4726A","G4766A","A4820T","A5085C","A5187G","T5281C","T5357A","A5717G","-5791G","-5792A","-5793A","G5856A","C6134A","C6160T","G6170A","A6172C","A6192C","-6195G","-6198A","-6202T","-6203A","-6204G","-6205T","A6228-","A6276G","A6311G","A6323G","G6578A","A6602T","A6653G","T6733A","T6766C","T6943C","C6951G","G7026A","A7042G","-7165T","G7197A","A7240G","C7511T","A7552G","G7657A","A7689G","C8171T","G8216A","A8367-","G8368-","A8426T","A8458G","A8531G","C8603T","A8794G","C8810T","C9073T","C9078T","A9095G","T9180C"],"INT":["Y99F","Q136K"],"RT-p51":["E36Q","T39A","S162C","G196E","T200R","D324E","A376S","E404D","V435M"],"RT-p66":["E36Q","T39A","D121Y","S162C","G196E","T200R","D248E","D324E","A376S","E404D","V435M","L452I","E471D","S491L","Q524E"],"gp120":["S1N","L94I","K141R","K150R","I153V","N157D","T250S","K267E","A288V","D294E","L341I","-370S","R391K","R448K"],"gp41":["E129G","Q290C","D305N"],"nef":["P24A","E28D","K39R"],"p1":["N9S"],"p17":["E42D","T53S","I61L","E62V","K69Q","S72T","L75I","V94I","T115A","Q117K","A119-","T122K","G123K","S125N"],"p24":["A6L","M10P","I15L","M54T","I58T","P92A","E187D","R203K"],"p6":["D32E"],"p7":["G8N","-13V","L24I","R26K"],"pro":["E35D"],"vif":["R19N","N22K","H27Y","Y30N","R37K","R47N","E78D","R167Q"],"vpu":["K37R"]},"labels":{"aa":"INT: Y99F, Q136K; RT-p51: E36Q, T39A, S162C, G196E, T200R, D324E, A376S, E404D, V435M; RT-p66: E36Q, T39A, D121Y, S162C, G196E, T200R, D248E, D324E, A376S, E404D, V435M, L452I, E471D, S491L, Q524E; gp120: S1N, L94I, K141R, K150R, I153V, N157D, T250S, K267E, A288V, D294E, L341I, -370S, R391K, R448K; gp41: E129G, Q290C, D305N; nef: P24A, E28D, K39R; p1: N9S; p17: E42D, T53S, I61L, E62V, K69Q, S72T, L75I, V94I, T115A, Q117K, A119-, T122K, G123K, S125N; p24: A6L, M10P, I15L, M54T, I58T, P92A, E187D, R203K; p6: D32E; p7: G8N, -13V, L24I, R26K; pro: E35D; vif: R19N, N22K, H27Y, Y30N, R37K, R47N, E78D, R167Q; vpu: 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Q28P, P30T, K31G, P49Q, S51*, Q52K; pro: L10I, T12K, D35N, M46L, R57K; rev: I21L, E32T, T62S, P103S, C107F, G111E; tat: E2D, C31S, Y32F, V36N, L39V, D67A, I69L, R78N; vif: Y30H, L39M, E63A, L81M, K92E, K122E, T159P, K160R, G185E, M189V, N190S; vpr: N16S, N48H, A93S; vpu: P3T, A19V, V21I, V26A, K37R, D40E, E58D, W77G"}}},{"name":"KP109503","node_attrs":{"div":0.15567999999999999,"accession":"KP109503","clade_membership":{"value":"CRF11_cpx"},"country":{"value":"CM"},"date":{"value":2011.0},"Strain_name":{"value":"DEURF11CM015"},"LANL_subtype":{"value":"CRF11_cpx"}},"branch_attrs":{"mutations":{"nuc":["A368G","G407A","G425A","A431G","C471G","C476T","A499G","A500G","A592T","A654C","A656G","G686A","G712A","C767T","A774T","G791A","T824G","A836G","T944G","G977A","G978C","T992G","A998G","G1019A","T1063C","A1079T","C1095A","C1096A","A1097C","C1187T","A1192G","A1208G","G1271T","A1277G","C1280T","C1295A","C1299A","C1322T","T1329A","T1334C","T1362C","A1367G","G1404A","G1430A","T1444C","C1449A","A1461G","A1494-","A1495-","A1496-","G1498A","A1499G","T1501G","T1502A","-1503A","-1504T","-1505T","G1619A","T1646C","G1673A","T1681C","C1682A","A1733G","A1735C","G1736C","T1741G","A1742G","G1743A","C1744G","C1745A","-1746T","-1747A","-1748G","T1752C","C1754T","C1756A","A1758G","G1769A","G1771C","G1772A","G1781A","T1791A","A1794G","C1825T","T1828A","C1831T","A1835G","C1845G","G1846A","G1849A","G1855A","G1858A","A1861G","G1907A","G1920A","A1945G","G1972A","G1979C","A1981G","G1985C","C1987T","A1990T","G1997T","A1998G","G1999T","A2014C","G2023A","A2057C","G2059A","C2062T","T2071C","T2086A","A2108G","A2113C","G2134T","C2149G","A2155G","A2215C","A2241G","A2243G","A2344G","T2383C","A2413G","C2464T","C2467T","T2476C","G2566A","T2632C","G2656A","G2662A","G2705A","A2714G","T2735C","A2752G","C2756T","T2758C","A2764G","G2830A","C2885T","A2938G","C2968A","A3027G","C3067A","T3096C","A3103G","A3115G","A3116G","C3129A","T3172C","A3211C","A3217G","A3268G","G3279A","A3387C","T3399C","T3414A","A3477G","G3483A","G3494A","G3553A","G3564A","T3613C","A3658C","T3757A","A3760G","A3775G","T3793C","A3794C","C3829T","A3901G","T3924C","G4109A","A4111G","G4145A","C4146G","A4189T","G4228A","G4243A","G4276T","C4396T","T4397A","G4573A","G4622A","G4677A","A4694C","A4701G","C4728A","T4738C","A4820C","G4859A","A4861G","G4870A","G4888A","T4916C","C4923A","T4940C","A4956C","A5005G","A5049C","A5066C","T5072G","A5119G","G5128A","C5149T","A5159G","T5182C","C5213A","C5251A","T5292C","G5437C","C5446A","T5457C","A5460G","A5482G","T5484A","A5495G","G5496T","A5499G","G5538A","-5603C","G5619A","C5620A","A5621C","A5652C","A5659C","A5685G","G5686T","G5687A","T5708A","A5720G","G5775A","G5794-","A5795-","A5796-","T5798-","C5801A","A5802G","A5805G","C5806T","T5808G","-5809G","-5810C","-5811A","A5907G","T5923C","A5926C","G5944A","A5947G","G5948T","C5989T","T6025G","G6029-","A6030-","A6031-","A6051C","C6052T","A6092G","C6097T","G6170-","T6171-","A6172-","A6173-","A6174-","A6176-","A6177-","T6178-","G6179-","A6182-","C6183-","T6184-","A6185-","T6187-","A6188-","-6191C","-6192A","-6193T","-6194A","-6195A","-6196T","-6197A","-6198G","-6199C","-6200A","-6201C","-6202T","-6203G","-6205A","-6208A","-6209A","-6210A","-6212G","-6216G","-6219A","A6251G","A6263G","A6275C","G6280A","A6281C","A6283G","C6289T","G6303A","A6320C","T6325G","A6326G","G6362A","A6376G","C6397T","G6458C","T6460A","A6471C","A6489C","G6572A","G6573A","A6574G","G6605A","C6637T","A6638G","A6646T","A6647G","A6668G","A6669G","-6686A","-6687G","-6688T","-6689A","-6690T","-6691A","G6693A","A6695G","T6719A","C6729T","G6732A","T6733G","A6734G","A6737G","T6760G","A6775C","C6777A","A6780C","G6781T","A6786G","T6787C","C6790A","C6792T","C6797G","A6798G","A6809C","C6812A","G6819A","A6824G","-6828A","-6833A","T6835C","A6837C","C6838A","A6840C","C6843A","A6858G","G6905C","G6906A","A6947G","-6958A","-6961T","-6963G","-6966C","-6968T","-6969G","-6972G","-6973T","-6974A","-6975C","-6976T","-6977T","-6978G","-6979G","-6980G","-6981T","-6982A","-6983A","-6984A","C6993A","-6994C","A6996G","-6997T","A7001G","C7006A","C7008A","T7045A","C7087T","A7089C","A7094G","G7101A","A7107G","A7133G","C7134T","A7148T","A7149G","T7150C","A7152G","T7153G","-7165C","A7181G","T7192C","G7225A","C7266A","A7275G","A7276G","A7277C","A7297G","A7313C","C7325T","C7328T","T7370G","A7375G","C7411T","A7440G","G7501A","G7534A","C7597T","C7603T","C7658G","A7666G","A7673G","A7676G","C7688A","A7690C","C7701G","C7702G","A7722T","G7726A","G7765A","G7790A","A7791G","T7796A","G7801A","C7843T","A7862G","C7874T","T7892G","G7893T","C7912T","A7931G","T7932C","C7935A","A7936C","A7937C","C7939G","A7942G","A7944G","G7965A","C7969A","A7992G","A7997G","C7998A","G8005C","A8011C","C8017G","A8051C","A8108C","A8111G","A8152G","T8168C","A8172G","T8209A","C8213T","A8216G","G8219A","C8232T","G8234A","T8277C","G8330A","C8331G","T8348A","A8375G","A8388G","T8390C","A8405G","G8407A","A8409G","T8414A","C8415A","A8425C","C8440T","A8445C","T8451C","A8455C","C8471A","C8477T","A8484T","C8485T","G8487-","A8489-","C8494A","T8505A","G8506A","C8507G","C8509T","A8531T","G8537T","T8582C","A8584T","G8588A","G8590C","T8600C","A8653G","C8675T","T8701A","A8793G","G8795T","G8805A","C8828A","T8835C","T8847A","A8858C","A8870G","G8875A","G8882A","T8883C","A8885G","T8897C","C8934A","G8942A","T8947A","C8966T","A8970G","G89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K7Q, M50T, V112M, A124S, E138D, E167D, L208I, G283S; RT-p51: I5V, K13N, E40D, K49R, I50V, E204K, K207E, F214L, H221Y, D291E, K311R, D324E, L334P, I341V, P345Q, R395K, K431T, I435T, F440Y; RT-p66: I5V, E6D, K13N, E40D, K49R, I50V, E204K, K207E, F214L, H221Y, D291E, K311R, D324E, L334P, I341V, P345Q, R395K, K431T, I435T, F440Y, M452I, K461R, R463K, V467I, G490E; gp120: K18R, A32S, E59-, N66T, I80V, V106H, N108-, T110-, -115S, -116T, -118R, -119N, -120V, -121G, -122D, -123Q, -124A, I133V, I137V, K141Q, K143Q, R150K, I156L, N157K, N158D, N161S, V170I, D202Q, N206T, K212T, G240K, D251N, N272G, I281V, F289-, Y290-, A291-, T292-, G293-, D294-, H302Q, K307S, T308K, E309A, N311S, N312K, T313I, Q315G, K319Q, Q320K, R322K, -324E, -326N, -327T, N328T, T330-, N335S, G351Q, S365G, N368K, -374T, -375W, -376V, -377K, T380N, K381S, N383D, -384E, T385N, Q412P, K414E, R416K, T427V, N432C, -433R, N435D, T443A, T471N, K474R; gp41: I4L, L8F, L9F, S23A, I24M, K46R, D113E, N114S, M115N, I124V, S125G, Q129N, T133R, N140I, D163S, S165T, I187V, L191F, C197V, I210A, P211H, N212Q, G221E, D230G, T232D, I270V, R277Q, Q290R, L304F, N305D, A306T, A310V, V311I, A343S; nef: I16V, R22Q, T23A, P25T, E28A, A33V, K35Q, E38A, T48L, A49N, C55K, A56V, E63D, E65D, Y81F, G83A, F120Y, R151D, E155K, N162K, C169S, R178K, L198M, F202Y; p17: L46V, E55G, Y86F, I107L, S126N; p2: V7A, T8Q, -10T, -11N, -12V, I13-; p24: I15L, D71E, H87Q, M96I, L111P, P122N, K154R, E180D, L190M, S200T, G225S; p6: L1P, -26Q, K27E, K31T, L38I, T39A, P49L, L50*, S51L; pro: I13V, A16G, D37N, R41K, E60D, E61Q, V63L, E67C; rev: S8N, Y28C, K30P, P31A, N50R, D53H, I55L, Q57E, E68A, E87A, D88G, I102V, C107S, D108E; tat: A21P, Q24K, K40S, S75P, Q76T, T77S, R79G, E86K, S87*; vif: V31I, K36N, L39V, H48N, I51T, E78D, K92R, R95K, G101D, H113N, I124L, N140S, T155P, K160N, Q178R, R181K, T188I; vpr: M19V, P37T, I63T; vpu: Q5T, I18L, G27Y, L34Q, K38R, Q66K"}}}]}]},{"name":"CRF11_cpx_NODE_0000003","node_attrs":{"div":0.07991999999999999,"clade_membership":{"value":"CRF11_cpx"}},"branch_attrs":{"mutations":{"nuc":["A518G","T734C","T1978G","T2206C","T2776C","A5293T","-6175G","T6582G","C6797A","C8296T","T8456A"],"gp120":["N204E"],"gp41":["S101V","N239S"],"p17":["I61M"]},"labels":{"aa":"gp120: N204E; gp41: S101V, N239S; p17: 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I101L, Q136K, L208I, K211R, Y227F, S255N, D256E; RT-p51: D6E, I135T, V202I, K207Q, R211K, Q245K, D248E, R307K, A360T, V372A, E413D, V417I; RT-p66: I135T, V202I, K207Q, R211K, Q245K, D248E, R307K, A360T, V372A, E413D, V417I, V458I, H483Y, L517I, S519N, K527N, K530R; gp120: A2V, D4G, N5K, P57V, N64K, H77Y, -109S, T110S, -111A, -112T, -113A, -114R, -115G, -116S, R138K, L147I, N159S, T172A, K212H, G240E, D251N, P263T, Y290F, K307R, T308A, E309K, Q315Y, -324S, -326S, -327N, N328-, N334A, S336H, I343V, K361I, S365N, T366I, W367R, -368F, -370G, -371T, -372T, -373W, -374E, -375N, -376G, N379T, N383-, T385-, V396I, R397N, K414R, N418V, N420D, L425V, N432V, N435T, R472N; gp41: I4M, A14T, A30V, E49D, L81F, V101N, D125E, Q129H, N195R, C197V, Q213P, E215G, G220E, R231K, T232D, I235V, N251S, H258R, R259H, I270T, T273L, R276H, R277S, E280G, T281A, I321L, Q323R, A325V, I329L; nef: E15D, I20M, P25A, K35R, K39R, -50L, A54D, E62T, G88S, K104Q, E108D, C138T, R151E, E155K, N157T, I168M, C169N, D174E, 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Q66K"}}},{"name":"AF492624","node_attrs":{"div":0.12415999999999999,"accession":"AF492624","clade_membership":{"value":"CRF11_cpx"},"country":{"value":"CM"},"date":{"value":1995.0},"Strain_name":{"value":"95CM_1816"},"LANL_subtype":{"value":"CRF11_cpx"}},"branch_attrs":{"mutations":{"nuc":["A168T","T200C","T201C","A263G","A303T","G317A","C379A","A412G","G413A","A417C","A520T","T525A","G540A","G541A","G542T","A562G","T572C","A605G","G607A","A619G","G762A","A774C","G810A","A860G","G956A","A980G","T992G","A1017C","C1040T","T1063C","C1187T","A1192G","C1211T","C1220T","C1235T","T1238C","A1242T","C1243G","A1278C","C1280A","C1294G","A1307G","G1328A","C1331T","G1394A","T1451G","G1472A","C1511T","T1574C","A1607G","C1756A","G1775-","A1776-","A1777-","A1794G","C1826A","T1828C","A1835G","G1846A","A1857G","G1907A","G1912A","G1920A","A1985C","G1999A","T2041C","T2080A","A2108G","A2113C","A2155G","T2257C","C2281T","A2389G","T2597C","G2686A","T2758C","A2815T","C2828G","G2921A","A2925G","C2960T","A2995G","G3010A","A3037C","C3056T","G3065A","A3066G","G3085A","G3151A","A3196G","G3209A","C3224A","T3225C","C3346T","A3367G","A3388G","A3449G","A3477G","G3484A","T3566C","A3583T","T3755C","C3756A","C3763T","A3768G","G3772A","G3787A","T3820C","T3853C","A3874G","C3892T","C3908T","G3925T","A3973C","A3989G","A3991G","G3997A","G4148A","C4149T","T4198C","G4228A","T4234A","G4252A","A4255G","G4264A","A4376G","A4378G","C4426T","T4441A","A4475C","G4549A","G4553A","C4650A","G4677A","G4689A","A4694C","T4701A","T4702G","G4767C","A4768C","A4774C","A4781G","A4814G","G4835A","C4914T","T4932A","T4976A","A4993C","T5027C","G5059A","G5060A","C5062T","G5086A","G5140A","G5143A","A5164G","G5179A","T5197C","T5263A","A5268T","T5294C","G5359C","A5375G","C5412T","T5424C","T5466C","T5483A","C5487T","T5491C","C5514A","G5538A","C5551T","C5579A","A5601T","C5614T","G5619A","G5635A","T5655C","C5663T","T5688G","A5689C","C5704T","A5717G","A5751G","G5794-","A5795-","A5796-","T5798-","C5801A","C5806T","-5810C","-5811A","A5866C","A5907G","A5921C","G5939A","T6024A","A6059G","T6067C","G6079A","A6157G","G6167A","A6172G","-6180A","-6181T","-6186A","-6189G","-6190C","-6191A","-6192A","-6193C","-6194T","-6195G","-6196C","-6197A","-6198C","-6199T","-6200A","-6201G","-6202C","-6203A","-6204A","-6205T","-6210C","-6213T","-6214G","-6215G","-6216A","-6217G","-6219G","-6220C","-6221C","-6222A","-6223A","-6225C","C6238T","A6275C","A6281C","C6289T","A6311G","A6320C","T6322C","A6323G","A6329G","G6336C","T6337A","G6391A","T6438A","G6463A","G6464A","G6466A","A6489C","C6523T","A6524C","A6525G","C6545T","G6583A","G6593A","G6631A","C6632T","A6639G","A6647C","A6649C","T6694G","A6764G","A6765T","T6766A","G6771A","A6773G","G6774C","A6780T","A6801G","C6807T","A6809G","A6820G","G6821C","A6824G","T6827A","T6829C","-6830T","-6831T","-6832T","-6835T","C6838A","A6840C","A6858G","T6882C","-6963G","-6964C","-6966A","-6968G","-6975C","-6978T","-6980G","A6990G","-6995A","-6996T","-6997A","-6998G","-6999G","C7008A","T7015A","C7019T","G7026A","T7045G","A7096G","G7101T","A7108C","A7113C","A7155G","A7157T","T7159A","-7165A","C7182T","T7400C","G7517A","A7604G","T7624A","G7705A","A7711G","A7782C","T7796A","T7913G","A7942C","G7957T","C8065T","T8067A","C8092A","C8103T","G8105A","G8114C","A8118G","G8168A","G8180A","T8209C","T8210C","G8219A","C8232T","A8263G","A8264G","G8267A","C8268T","A8272T","A8288G","T8348A","C8369A","C8412T","G8418A","A8425C","A8469G","C8477T","A8489G","-8490G","-8491A","C8514T","A8522G","T8597C","G8678A","C8756T","T8786G","A8794G","A8815C","A8844T","T8860C","A8909C","G8945C","A9060T"],"INT":["M50I","I72V","A125I","I201V","N222K","I234L","V260I"],"RT-p51":["I5V","Q245E","V276I","K277R","P321S","D324S","V372I","L377T"],"RT-p66":["I5V","E6D","Q245E","V276I","K277R","P321S","D324S","V372I","L377T","I452V","K461R","S554H","K558R"],"gp120":["K18R","T23P","D29N","P57H","K69E","D105N","-109C","-111N","-112V","-122E","-123K","-124N","K141Q","K143Q","I153V","I156L","N159D","N161T","F195Y","E204K","K212T","K224R","E247K","L260F","E262S","E265H","H280R","D294A","N304V","S306N","K307A","E309I","Q315K","K316R","A318V","K319E","E323Q","-324I","F325E","-326I","-327F","N335S","I343T","-368N","N369-","N379G","E381V","-382G","-384S","P389S","R391K","R416M","N420T","N432K","N434S","N435S","T436K","N437T","T443I"],"gp41":["V72I","D125N","N160T","S165T","L204V","Q213H","R214K","P216A","R218S","F255Y","F263L","A267V","A268T","V271L","E272G","A289T","G293S","A306T","A310V","I321V","A322I","Q323H","I329V"],"nef":["S9R","P24S","E28P","I43V","-50E","E158A","I168L","C169S","M173T","E201D"],"p17":["A15K","K26R","K28Q","E62V","L64I","G69N","K76R","R91Q","K95R"],"p24":["V11I","I15L","V27I","L83M","H87Q","M96L","L111P","K154R","T171C","G183Q","T188S"],"p6":["I21V","-26Q","K33-","T39A","L50S"],"pro":["L10I","I13V","K20R","D37N","R41K","V63L"],"rev":["S8N","L22I","E32Q","A37S","H82N","S86N","C89S","C107Y","G111E"],"tat":["R29K","V36H","P68H","R78T","G83V"],"vif":["H22N","V31I","A35T","K36N","L39R","D61P","H110Y","S116T","S130R","Q136P","R158K","T159V","R167K","G185E","S186N","*193W"],"vpr":["E55V","R85P"],"vpu":["P3S","V10I","A19V","I28L","K37R"]},"labels":{"aa":"INT: M50I, I72V, A125I, I201V, N222K, I234L, V260I; RT-p51: I5V, Q245E, V276I, K277R, P321S, D324S, V372I, L377T; RT-p66: I5V, E6D, Q245E, V276I, K277R, P321S, D324S, V372I, L377T, I452V, K461R, S554H, K558R; gp120: K18R, T23P, D29N, P57H, K69E, D105N, -109C, -111N, -112V, -122E, -123K, -124N, K141Q, K143Q, I153V, I156L, N159D, N161T, F195Y, E204K, K212T, K224R, E247K, L260F, E262S, E265H, H280R, D294A, N304V, S306N, K307A, E309I, Q315K, K316R, A318V, K319E, E323Q, -324I, F325E, -326I, -327F, N335S, I343T, -368N, N369-, N379G, E381V, -382G, -384S, P389S, R391K, R416M, N420T, N432K, N434S, N435S, T436K, N437T, T443I; gp41: V72I, D125N, N160T, S165T, L204V, Q213H, R214K, P216A, R218S, F255Y, F263L, A267V, A268T, V271L, E272G, A289T, G293S, A306T, A310V, I321V, A322I, Q323H, I329V; nef: S9R, P24S, E28P, I43V, -50E, E158A, I168L, C169S, M173T, E201D; p17: A15K, K26R, K28Q, E62V, L64I, G69N, K76R, R91Q, K95R; p24: V11I, I15L, V27I, L83M, H87Q, M96L, L111P, K154R, T171C, G183Q, T188S; p6: I21V, -26Q, K33-, T39A, L50S; pro: L10I, I13V, K20R, D37N, R41K, V63L; rev: S8N, L22I, E32Q, A37S, H82N, S86N, C89S, C107Y, G111E; tat: R29K, V36H, P68H, R78T, G83V; vif: H22N, V31I, A35T, K36N, L39R, D61P, H110Y, S116T, S130R, Q136P, R158K, T159V, R167K, G185E, S186N, *193W; vpr: E55V, R85P; vpu: P3S, V10I, A19V, I28L, K37R"}}}]},{"name":"CRF11_cpx_NODE_0000005","node_attrs":{"div":0.08417999999999999,"clade_membership":{"value":"CRF11_cpx"}},"branch_attrs":{"mutations":{"nuc":["A50G","A605C","G712A","C1235T","T1385C","G1476A","A1841G","A2002G","T2080C","A2113C","G2463A","A3103G","T3139C","T3221G","G3222C","T3252C","C3328T","A3388G","A3643G","G3907A","A4376G","A5094G","T5483A","C5707T","G5803C","C6385T","A6639G","A6767G","G6774A","T6787C","A6800C","G6821A","A6826G","-6996A","A7094G","A7106G","A7155C","C7158A","C7603T","C8047T","C8080A","C8103T","C8146T","A8469G","A8558G","A8794G"],"INT":["I201V"],"RT-p51":["S123N","C376A","I386T"],"RT-p66":["E6D","C376A","I386T"],"gp120":["N160S","E262S","E265K","I305V","K316Q","E323-","-324K","K414E","N418D"],"gp41":["P216A","A267V","T281I"],"p17":["S126N"],"p7":["G4S"],"pro":["I15V"],"rev":["E32K","P67S","P100S"],"tat":["V36Y"],"vif":["T170A"],"vpu":["V13I"]},"labels":{"aa":"INT: I201V; RT-p51: S123N, C376A, I386T; RT-p66: E6D, C376A, I386T; gp120: N160S, E262S, E265K, I305V, K316Q, E323-, -324K, K414E, N418D; gp41: P216A, A267V, T281I; p17: S126N; p7: G4S; pro: I15V; rev: E32K, P67S, P100S; tat: V36Y; vif: T170A; vpu: 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S57G, G283S; RT-p51: I5V, V8I, K49R, E169D, K207Q, L283I, D291E, A376T; RT-p66: I5V, V8I, K49R, S123N, E169D, K207Q, L283I, D291E, A376T, V452I, E516K; gp120: V10I, N52S, D105E, -109C, -111E, -112A, -115N, -116S, R138K, N157D, N159D, T161S, R164K, V170G, V173F, K174T, A176T, K179R, V180L, H188P, K199N, C200R, R201K, N206D, P210A, S215N, T216A, H221R, V227P, Q230P, N234K, E239Q, E241K, V242G, R245K, D251F, T255A, R265A, N272G, K277Q, A291T, G293K, D294V, N304T, S306N, N311K, N312K, T313A, Q315H, T319D, K324E, F325Y, -327N, N328S, K329T, I332N, N334A, G351R, -368N, N369F, -370N, -371D, -372S, -374T, -375N, -376G, -377E, N379D, E381N, -382G, P389L, R391K, K393R, V396I, R397N, G403R, I411V, R416T, D418I, N420Y, -433G, N434T, N435P, T436N, R441I, G445*, K464*, P465S, R472K, K474R, E479Q; gp41: L9V, H53Q, D109S, I118M, N125K, N126D, S157D, D163S, K172R, L204I, F206L, K214E, E215A, G220R, I222T, R231N, T232N, S256C, F263S, I264A, I281T, Y284F, G293S, N305D, A306T, T307I, I309V, A322V; nef: 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Q66H"}}},{"name":"AJ291719","node_attrs":{"div":0.14048999999999998,"accession":"AJ291719","clade_membership":{"value":"CRF11_cpx"},"country":{"value":"FR"},"date":{"value":1999.0},"Strain_name":{"value":"MP1298"},"LANL_subtype":{"value":"CRF11_cpx"}},"branch_attrs":{"mutations":{"nuc":["C44T","G52A","C96T","G112A","A286G","-305A","G325A","G344C","G354A","A398G","A431G","A515T","A516C","A520G","A548G","T572C","T636C","A656C","G683A","C694G","G709A","G716T","G755A","G771A","A776G","G803A","A866G","C1061T","A1073G","G1089A","C1137T","A1292C","G1298A","A1367G","G1418A","T1427A","A1445C","C1446A","A1447G","T1451A","A1461G","G1474A","A1475G","A1476G","A1495G","C1511T","A1580G","G1664A","C1680A","A1733G","-1754C","-1755C","-1756C","G1852T","A1918G","A1985C","G2002A","T2083C","A2131G","A2174T","A2179G","C2199A","C2206T","T2263C","A2311G","T2425C","G2459A","A2462G","C2464A","T2499C","T2527C","A2579T","G2686A","G2699A","T2749C","C2909T","G2921A","G2950A","A3031G","T3045C","C3067A","T3068A","G3085A","C3095T","A3124G","A3145G","A3154G","G3206A","G3208A","A3268G","G3340A","C3352A","A3421G","G3484A","A3490G","T3550C","G3556A","T3589C","T3602C","G3631A","A3733G","T3754C","T3755A","C3756A","A3808G","T3844C","A3866G","G3869A","T3904C","C3908T","A3931G","A3985G","A3989G","C4072T","A4083G","A4084G","G4109A","A4111G","T4234C","A4285G","T4288C","C4426T","G4573A","T4640C","G4677A","G4735A","G4749A","G4764A","G4784A","A4820T","T4932A","A4937C","A4946C","A4951C","C4965T","T4991C","C5006T","T5027C","A5049G","G5143A","A5151C","T5239C","C5280T","T5281C","C5397A","G5415T","T5451C","A5453T","A5462G","A5463G","T5482A","A5483T","T5491C","C5552A","A5581C","G5599-","T5601A","-5603T","A5611G","T5617C","T5636C","T5679C","G5686T","G5687T","C5704T","T5705G","G5711A","T5727A","G5729A","A5760G","-5791G","-5792A","-5793G","-5797T","-5799G","A5906C","A5907G","T5951G","A5952T","T5986C","C6023T","A6136G","C6145T","G6167A","G6170C","A6173-","A6174-","C6175-","A6179G","-6180T","-6181A","T6184C","C6189G","A6192C","-6193G","-6194T","-6198G","-6199G","-6203A","-6204G","-6205A","-6206A","-6207G","-6208C","-6209A","-6210T","-6211G","-6212A","-6214T","-6216A","-6217A","-6220A","-6223G","A6233G","A6249G","T6250G","A6251G","A6262G","A6263G","G6267C","G6269T","G6277T","A6278G","C6281G","A6282T","G6303A","T6306A","A6311G","T6322-","A6323-","A6324-","A6330T","T6331G","G6336C","G6339C","G6346A","A6352T","A6353C","A6354G","C6370T","G6457T","A6461G","G6480A","G6530A","T6551A","G6569A","A6628T","T6634A","A6648T","A6649G","A6686G","-6688G","C6692-","G6693-","T6694-","A6695-","T6696-","-6698C","-6699A","-6700G","-6701A","-6702T","A6714G","G6716A","T6719G","T6745C","A6751G","C6752A","G6767A","A6773G","A6774G","A6776-","C6777-","A6778-","G6779-","A6780-","A6781-","A6797G","C6810T","A6811G","A6824C","C6838A","C6843A","C6859T","T6860A","A6926G","-6956A","-6957G","A6962G","-6963A","-6964G","A6966C","-6968A","-6972A","-6975C","A6985-","A6989G","A6994T","-6997A","-6998T","A7001G","A7002C","C7008A","T7045A","A7063G","A7089C","G7094A","G7102T","C7108T","A7113G","C7124T","A7152C","A7158G","G7166-","A7167-","C7170-","C7171-","C7174T","G7190A","T7222C","G7324A","G7366A","G7391A","A7396G","A7440G","G7441A","T7447C","A7462C","C7474T","A7525T","A7533G","T7603C","T7609C","T7624A","G7640A","A7666T","A7691C","C7692T","G7705A","A7722C","C7747A","A7800G","A7807C","A7822T","A7832G","A7847G","C7942G","G7949A","G7979A","C7998G","G8019A","C8062T","C8065T","T8067G","A8069C","G8070T","G8098C","T8113A","G8130A","G8143A","C8145T","T8153C","C8155T","G8168C","C8169T","A8172T","C8213T","T8278C","G8288T","T8321C","A8323C","C8342G","A8367G","C8413T","T8460C","T8461A","G8479C","A8484-","C8488A","C8490-","A8491-","A8493-","C8494-","T8505A","G8508A","C8510A","G8528A","G8558A","G8561A","T8600C","T8829A","T8835C","C8840T","G8852A","A8874G","T8903C","G8917A","G8945C","G8974A","T9072C","C9073T","C9129T","A9135G","G9137A","C9181T"],"INT":["I31V","V32I","I72V","K103R","V112M"],"RT-p51":["T27S","T35K","E122K","N123E","I135T","S162C","V202I","P272S","V276I","V317A","D324E","L325I","V371I"],"RT-p66":["T27S","T35K","E122K","S123E","I135T","S162C","V202I","P272S","V276I","V317A","D324E","L325I","V371I","S554N"],"gp120":["K18R","Y33V","P57F","D105N","V106L","-111V","-112T","-119M","-120I","-121E","-122E","-123K","-124G","K127E","N132R","I133V","I137V","R138T","D139Y","K141N","K142E","Q143V","R150K","L151H","I153V","N158V","E162-","N167R","R201N","K203E","G209E","V226I","L233I","E239K","R265M","S278G","R280Q","Q287R","A288T","F289V","D294A","Q300K","V305I","K307G","T308W","E309K","W310-","N311-","Q315E","T319M","K324Q","N335S","S336T","N358D","N369-","-374W","Q412P","E414K","R416S","D418N","N420S","N432P","-433N","N435T","N437S","D446N","K457R"],"gp41":["A30T","K46R","R74S","K77R","V101I","D109N","D113N","E119Q","E121D","T130L","N140T","D148E","N166S","I177V","I182V","H213Q","A216T","G226S","T232S","S239N","N251S","F255C","S256L","L265F","R276H","Y284L","A289L","Q290L","L304F","V329F"],"nef":["S9G","P24R","F40H","S46T","T48-","Q50-","T51-","C55S","A56T","C163S","R178G","R192K","E201D"],"p17":["V7I","M61L","E62G","Q90H","A120G","S125N","K127N"],"p2":["-10V","I13-"],"p24":["A14T","I15M","L83I","G120S","E187D"],"p6":["L1I"],"p7":["R3K","S4G","K10R"],"pro":["Q18H","V63L"],"rev":["L13I","K32E","S34N","R44K","P72S","Q74P","D84H","C89S","D99N","I102T","P103S","C107S"],"tat":["N7K","Q13H","Y26F","Y36I","S59Y","I69L","T78R"],"vif":["V31I","R50K","V55I","G60R","S116T","E117D","K122T","H127Y","T155A","S186N","M189L"],"vpr":["N16T","A59V"],"vpu":["I2V","V10A","G27F","L33W","R35K","D40E","R41K"]},"labels":{"aa":"INT: I31V, V32I, I72V, K103R, V112M; RT-p51: T27S, T35K, E122K, N123E, I135T, S162C, V202I, P272S, V276I, V317A, D324E, L325I, V371I; RT-p66: T27S, T35K, E122K, S123E, I135T, S162C, V202I, P272S, V276I, V317A, D324E, L325I, V371I, S554N; gp120: K18R, Y33V, P57F, D105N, V106L, -111V, -112T, -119M, -120I, -121E, -122E, -123K, -124G, K127E, N132R, I133V, I137V, R138T, D139Y, K141N, K142E, Q143V, R150K, L151H, I153V, N158V, E162-, N167R, R201N, K203E, G209E, V226I, L233I, E239K, R265M, S278G, R280Q, Q287R, A288T, F289V, D294A, Q300K, V305I, K307G, T308W, E309K, W310-, N311-, Q315E, T319M, K324Q, N335S, S336T, N358D, N369-, -374W, Q412P, E414K, R416S, D418N, N420S, N432P, -433N, N435T, N437S, D446N, K457R; gp41: A30T, K46R, R74S, K77R, V101I, D109N, D113N, E119Q, E121D, T130L, N140T, D148E, N166S, I177V, I182V, H213Q, A216T, G226S, T232S, S239N, N251S, F255C, S256L, L265F, R276H, Y284L, A289L, Q290L, L304F, V329F; nef: S9G, P24R, F40H, S46T, T48-, Q50-, T51-, C55S, A56T, C163S, R178G, R192K, E201D; p17: V7I, M61L, E62G, Q90H, A120G, S125N, K127N; p2: -10V, I13-; p24: A14T, I15M, L83I, G120S, E187D; p6: L1I; p7: R3K, S4G, K10R; pro: Q18H, V63L; rev: L13I, K32E, S34N, R44K, P72S, Q74P, D84H, C89S, D99N, I102T, P103S, C107S; tat: N7K, Q13H, Y26F, Y36I, S59Y, I69L, T78R; vif: V31I, R50K, V55I, G60R, S116T, E117D, K122T, H127Y, T155A, S186N, M189L; vpr: N16T, A59V; vpu: I2V, V10A, G27F, L33W, R35K, D40E, 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L83V, I91A, S109G, T110N, K154R, T178S, A207V, G225S; p6: I21T, A22T, L38I; p7: S4G, W37*; pro: L10V, T12P, I13V, I36M, D37S, R57K, E61D, V63T; rev: E10A, V16A, N26S, K32A, S34T, R41Q, I52L, D53H, Q74P, D99E; tat: V4G, P6I, E9D, K29R, Y36H, R52W, T77A, T78S, K80N, S87P; vif: D14A, G60E, D61E, A62D, E63M, L91R, G101E, Q136P, H139R, T157K, A170T, H183R, S186N, M189V; vpr: N16S, S94R, P96Y; vpu: P3T, Q5R, I6T, I17L, V20I, V21I, V26A, K32R, Q36H, I39-, I43-, D44R, R45I, I46-, R47-, E48-, 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E55K, Q59P, M61I, E62K, Q65K, C87W, Q90S, I92V, V94G, D96E, S111N, A118G, A120T, K127Q, V128G; p24: A14S, I15M, R18K, E35G, G116A, V148T, K154R, A194S, S200N; p6: L50S; p7: G8E; pro: V15I, K20R, E35G, K45R, V77I; rev: T14A, I18V, Y28H, K32T, S34N, R44K, T62S, R66G, E68A, R80K; tat: E2D, N64S, L74S, P75S, T78N, K80E, E85K; vif: H27Y, V31N, A35T, L59V, E117D, R132K, A137T, N140T, K141Q, T155P, T159P, G185E; vpr: L22V, E25D, P37T, E55T, I61V, Q85P, A93S; vpu: I18L, L33R, K37R, A50E, 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I101L, V126M, N134G, T136K, K211R, I234V, I268L, R269K, D270H; RT-p51: T35V, K64R, V106I, E122K, D248E, K281R, P294S, A297E, K311R, E324D, A359C, V365I, R366K, V372M, S377T, K388R; RT-p66: T35V, K64R, V106I, E122K, E207A, D248E, K281R, P294S, A297E, K311R, E324D, A359C, V365I, R366K, T369A, V372M, S377T, K388R, E404D, R461K, I467V, Q509R; gp120: A2V, K3Q, E4G, P15S, D19E, V37A, I57L, E59D, K69R, V73A, K93R, L97F, -105D, -106V, -109T, -111R, N112I, N113H, -114D, -115S, -117N, -118T, -122T, K123T, G124E, V144L, H145Q, Y149E, K150S, I156M, N158K, N159S, T160S, V180T, Y189F, N204K, K224R, Q230H, R245K, A253T, S272F, V279-, S280-, I281-, G284-, P285-, G286-, Q287-, A288-, F289-, Y290V, T292L, D294P, H302Y, T308K, N312G, A318V, R322G, K323R, -326N, I332N, K334Q, S336P, V343I, N358D, T360K, -368N, N369K, -370S, K372N, -373G, -374T, -375W, -376T, S377K, -381T, -382G, -383E, -384T, T385G, P389Q, M406I, V414I, N416Q, K418E, L424I, G430R, G431H, N433H, N434T, G436E, E438-, T439-, D446N, R448K, S453N, Q462E, K472R; gp41: M7L, Q29H, D109E, E110A, N114K, D129K, A189T, L191F, T208I, P219L, D230G, R231K, D232S, N239S, S256L, R261K, F263C, V264A, H269R, S270T, L290Q, V311T, V322A, L330I, F340A, L345Q; nef: K7Q, I10P, R19K, T23A, S45N, S46N, E64D, Y102W, Q105K, Y135F, F139L, Y143F, C169S, Q170L, K192R, I194V, M198K; p1: P7S, S8P; p17: K26R, Q28K, L31M, T53A, E55D, Q58L, G62R, K69Q, Y79F, I107V, S111R, A119E, K120-, D121-, T122-, N124S, V128A; p2: A11V, A12T; p24: Q4H, I15L, V27I, P86Q, P92A, I96M, D98E, S120N, D187S; p6: S3N, F15L, F17I, G18M, I21M, P23S, S24Y, P30L, T39V; p7: S4G, R10K, T12I, K41R; pro: P39Q, K57R, Q61E, V63T, E65D; rev: S5N, G7D, V16I, Q24K, R50E, E57K, I59V, T68A, F73L, Q74P, I78L, G99R; tat: I8L, L36H, S62N, P70Q, K71E, N80D, P84S; vif: V7G, V31K, R36K, R37G, F39H, N47H, R50K, H73Q, E78D, E134D, Q136P, K141Q, T159I, P162S, V170T, H192Q; vpr: L20I, H45Y, E58V, R85P, S93P, S96P; vpu: Q2I, A3S, E5K, I6T, V7I, V10A, I17L, K38R, I43L, D48E, E58D, K66R, W77G, G79D"}}},{"name":"CRF27_cpx_NODE_0000001","node_attrs":{"div":0.09158999999999999,"clade_membership":{"value":"CRF27_cpx"}},"branch_attrs":{"mutations":{"nuc":["T3170G","G6466T","G6779C","C8415G"],"RT-p51":["Q334L"],"RT-p66":["Q334L"],"gp41":["E137K","A267L","A268G","V271S","E272L","L273K","L274G","G275L"],"p17":["Q90R"],"rev":["C85-","S86-","E87-","D88-","C89-","G90-","T91-","I102T"],"tat":["Y47H"]},"labels":{"aa":"RT-p51: Q334L; RT-p66: Q334L; gp41: E137K, A267L, A268G, V271S, E272L, L273K, L274G, G275L; p17: Q90R; rev: C85-, S86-, E87-, D88-, C89-, G90-, T91-, I102T; tat: Y47H"}},"children":[{"name":"MN116204","node_attrs":{"div":0.13843,"accession":"MN116204","clade_membership":{"value":"CRF27_cpx"},"country":{"value":"CD"},"date":{"value":2003.0},"Strain_name":{"value":"CG_0077_01"},"LANL_subtype":{"value":"CRF27_cpx"}},"branch_attrs":{"mutations":{"nuc":["T128G","G130C","A132T","C134-","T135-","A136-","G137-","A138-","G139-","A140-","T141-","C142-","C143-","C144-","T145-","C146-","A147-","G148-","A149-","C150-","C151-","T153-","T154-","T155-","T156-","A157-","G158-","T159-","C160-","A161-","G162-","T163-","G164-","T165-","A168-","A169-","A170-","A171-","T172-","C173-","T174-","C175-","T176-","C185G","G186T","C187T","C189-","G190-","T200C","T201C","-214G","A216G","A426C","G452A","C471A","C503A","T508A","C516A","C539T","C558T","A562G","T572C","C603A","G614T","A656G","A664G","-694T","G696A","C698T","C713T","G837A","T852A","A891T","C904T","G911A","A945G","T947C","G956T","A978T","C988A","T1001C","C1005G","G1016A","A1025T","G1030C","G1031A","G1064A","C1065G","A1066C","G1077A","C1078G","G1109A","T1238C","T1253A","A1271T","A1277G","C1292T","A1359T","C1406A","A1418G","G1442A","C1444T","T1446A","C1492A","A1544G","G1619A","A1656C","T1679C","G1691A","T1741C","G1742C","A1743-","C1744-","C1745-","C1768T","T1783C","C1831T","G1835A","A1882T","A1927G","A1966T","G1968A","G1972A","A1981G","A2007G","G2074A","A2380C","A2403G","A2463G","G2548A","T2579A","C2589T","C2615A","A2626G","G2682A","G2686A","G2693A","G2704A","C2715A","A2809G","A2821G","G2833A","A2869G","T2905C","C2909G","A2918C","G2951A","G3010A","A3103G","C3139T","G3193A","A3200G","G3206T","A3279G","A3307C","A3334G","T3399C","T3412C","G3463A","G3493A","C3589T","G3686A","A3703G","G3718A","G3756A","A3769G","G3825A","C3857A","G3859T","A3866G","A3876G","T3904C","G3907A","G3925A","A3955C","A3985G","T4009C","C4021A","A4036G","G4145A","C4146G","G4268A","C4270T","A4387G","G4388-","C4389-","A4393T","G4394T","A4395G","A4397T","C4400T","A4401G","A4403T","A4406-","A4407T","A4408T","A4498G","T4585G","T4606G","A4658G","T4701C","T4702G","A4725T","A4737G","A4804T","G4838A","G4864A","A4871G","T4907C","G4913A","C4919T","T4932G","G4969A","C5034T","C5050A","T5072C","T5073C","G5099A","G5176A","A5223T","G5236A","A5246G","G5269A","A5277G","C5342T","A5352G","T5354G","A5355G","T5382G","G5415A","T5430C","A5461C","G5462A","G5463A","G5468C","T5484A","G5526A","A5527C","A5533G","C5536A","C5539A","G5557A","G5558A","A5574G","G5599A","C5602A","-5603A","G5614A","C5615A","G5620C","A5629G","A5644G","A5659T","C5679T","T5684C","C5704T","T5705G","T5708C","A5716C","A5720G","-5797T","-5798T","-5799G","T5800G","T5801C","G5802A","G5803A","C5804A","A5806C","G5808T","C5833A","G5842A","G5843T","C5869A","G5907A","T5911A","G5915A","A5916C","C6004T","C6007T","A6019G","C6026A","A6030G","A6060C","A6073G","G6079A","C6097T","A6136G","A6159C","A6167G","T6169G","-6174A","-6175G","A6182G","C6183G","A6186C","A6194G","T6201C","-6208A","-6209A","-6210T","-6211A","-6212A","-6213C","-6214A","-6215A","-6216T","-6217G","-6218A","-6219T","C6230G","A6233C","A6268T","A6281C","G6284A","T6295C","C6305G","G6311A","A6313G","C6317T","G6323A","A6326G","T6328G","A6330C","-6333T","T6334A","A6335G","A6336G","T6337G","T6340G","A6394G","T6418C","T6427A","C6446T","G6463A","C6469T","A6471C","C6496T","G6532A","G6550A","T6562C","C6599A","G6611T","C6612T","A6616G","C6618A","T6643G","A6647C","A6648C","A6653G","A6654T","C6667T","G6681T","A6683G","A6686G","C6758T","G6774C","A6776G","A6780T","G6781A","G6788A","A6789C","T6797G","A6801G","G6803A","G6809A","C6812A","A6818G","A6820C","C6827A","G6829-","C6832A","C6850T","A6855G","T6860G","A6877G","G6905A","T6916C","G6935C","A6937T","A6944C","A6957C","A6989G","C6993G","-6995G","-6996A","-6997C","-6998A","-6999G","-7000A","-7001A","-7002A","-7003T","-7004G","-7005A","-7006C","-7007A","-7008C","-7009T","C7014T","G7026A","A7036G","G7040A","A7044G","C7045A","G7054A","C7078T","A7090G","T7095C","T7099C","A7100G","G7106A","C7127A","G7142A","G7146C","A7148G","A7149G","A7158G","A7163T","T7192C","G7309A","T7604A","C7605T","T7606G","T7622A","T7624A","A7633C","C7651A","T7666G","A7688G","A7696T","A7701G","G7709A","G7712A","A7744G","G7753A","C7792A","A7800G","T7801A","T7825C","A7826C","T7827A","A7834C","G7835A","G7873A","T7876G","A7937C","A7944C","G7947A","A7948C","G7961A","A7964G","G7992A","G8019A","C8047T","G8050A","C8065T","G8079A","C8080A","T8092A","G8141A","A8154T","T8159G","G8170A","T8197C","T8203C","T8205C","A8222G","G8255A","A8263G","G8264A","G8267A","A8288G","A8297G","G8308A","T8332A","C8386A","G8388A","G8402A","C8406A","C8412G","T8414A","C8419T","A8420T","T8426A","T8451C","C8471A","T8501A","C8514G","A8534T","C8552T","G8554A","C8609T","C8640A","A8642G","A8647G","C8648G","A8652C","T8740A","T8770A","A8793G","A8798G","G8805A","C8825T","C8831A","A8859G","G8864C","G8868A","A8869C","A8873G","G8875A","G8894A","G8917A","T8923G","G8945T","C8993T","C9108T","T9109G"],"INT":["S17N","L28I","I31V","K34R","M50I","A124S","V165I","I204M","A205-","K211-","D270E"],"RT-p51":["K103R","D123S","C162S","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S17N, L28I, I31V, K34R, M50I, A124S, V165I, I204M, A205-, K211-, D270E; RT-p51: K103R, D123S, C162S, T165I, Q174K, G196E, A200T, A207D, P272A, K275Q, A286T, V371L, K395R, V435A; RT-p66: K103R, D123S, C162S, T165I, Q174K, G196E, A200T, E207D, P272A, K275Q, A286T, T369A, V371L, K395R, E404D, V435A, V531I, S554N; gp120: N5E, R18K, D19E, D21T, L58M, E59G, K69T, N102T, -105E, -106A, -107K, -109N, T110G, -111T, -114A, -115T, -122V, L126V, K127Q, K138N, K143Q, V144I, K150R, L151V, V153M, P155S, N158E, N159T, T160I, N161G, N206T, L249I, A253F, T255N, K265P, N267V, R276I, K277E, S278G, A288V, S291R, H302Y, N306S, R307A, T308E, E309L, N312T, Y315E, K316R, V317I, A319T, Q320K, R322G, L325I, K334R, S336A, I341M, G351R, E361P, N364H, N369-, -373N, -374D, -375S, -376D, N378H, T380W, -381M, -382K, -383N, -384D, T387I, R391K, V396I, N397R, V414A, N416E, L425I, G430S, G431P, N432G, N435S, T437S, K472R; gp41: S101M, S107T, E110D, D121E, D129E, E133G, D163E, N166R, I175Q, V178I, H209L, N212H, E214A, G215D, G220R, R221G, E225G, N251S, R259Q, F263L, E280K, Y284L, W286G, I301T, V318I, V321I, V322I, I329V, I332V; nef: A15E, V16I, M20I, T23A, P24E, P25G, A26-, A27-, D28-, G29-, N51T, R71K, V85F, L100M, Y102W, K104Q, E108D, K151E, E155K, S163R, M173V, E174D, E176T, R178K, I194R, E201D; p1: N9H; p17: L61I, L75F, K76R, Y79F, I107M, N110S, E118A, K120M, D121N; p2: A7V, S8T; p24: V36I, S41T, T54S, T58I, T72A, E75D, P86Q, P92A, R100T, Q112A, A116R, E180D, T210S, S225G; p6: I21T, T22P, P23S, S24P, P25-, P30L, T39A, S51L; pro: V13I, E65D, K70R; rev: R4N, S8R, A15T, K20R, K30T, R32S, T34P, R38Q, K39R, P67S, C82S, G98E, V104G, S106P, A108T, *117Q; tat: D2E, R29Q, C31S, K51Q, R53G, Q54K, G61N, S73P, I74L, Q76H, N80T; vif: V7G, F39R, N47Y, I51V, H73L, R93K, S116A, Y127H, R128K, T151A, T155N, T159I; vpr: H40L, N48D, E58G, I83V, I84V, S93A; vpu: Q2I, A3N, E5Q, S8G, I13V, I18L, V19A, V26A, L33W, L34S, K37Q, K38R, L76I, G79I, N80D"}}},{"name":"AJ404325","node_attrs":{"div":0.13047999999999998,"accession":"AJ404325","clade_membership":{"value":"CRF27_cpx"},"country":{"value":"CD"},"date":{"value":1997.0},"Strain_name":{"value":"97CDKTB49"},"LANL_subtype":{"value":"CRF27_cpx"}},"branch_attrs":{"mutations":{"nuc":["T355A","A369C","G394A","G395T","G428A","C512T","C539T","T560C","T571A","A661G","C669A","C688A","-694A","C700A","A701G","A706T","G709A","C719T","G770A","T777A","C974T","T979C","A1002G","C1013G","A1025C","C1088T","G1090A","C1094T","G1199A","T1253A","A1263T","G1339A","C1350T","A1367G","G1394A","A1400G","G1404A","A1424G","G1430A","A1445C","G1498A","A1567G","A1580G","C1613T","A1701T","G1725A","A1740G","G1760A","C1782G","T1790C","G1794A","A1804G","G1852A","G1857A","A1903C","G1968A","C1993A","G2074A","T2101C","T2104C","A2140G","T2171C","A2191G","A2311G","A2498G","G2518A","T2536C","A2563C","G2610T","T2657C","G2675C","G2686A","A2713G","G2714A","G2725A","A2755C","A2815G","C2828A","C2839A","G2980A","G3004A","G3053A","A3130G","A3230T","G3250A","A3292G","T3450A","G3477A","G3544A","C3545T","A3592C","T3613A","C3623T","A3655G","A3724G","A3727T","A3733G","G3770A","C3787T","G3808T","G3825C","C3857T","A3934G","G4046A","T4085C","C4132A","G4145A","T4165C","T4216C","T4282A","C4396T","A4555C","G4581A","G4644A","A4646T","C4674T","G4677A","A4697G","A4774T","A4784G","G4829A","G4859A","A4861G","A4900G","T4912C","C4965T","C4976T","G4981A","T4991C","G5030A","C5034T","A5056G","T5062C","G5086A","A5096G","A5134T","A5187C","G5226A","C5242T","C5294T","A5296G","C5333T","A5336C","G5357A","C5397T","T5436A","G5463C","T5472C","C5478T","T5484G","G5538A","A5545G","A5547G","G5548A","G5599-","-5603T","A5611C","T5612A","T5658C","C5663T","G5699A","A5717G","T5731A","T5807G","-5809C","-5810T","-5811T","T5836G","T5844C","G5845A","A5896G","T5929C","A5935C","G5954A","A5955C","C6004T","T6134C","C6139T","C6145A","C6160T","A6173-","A6179G","A6180C","T6181A","C6184A","C6190T","A6191C","-6208A","-6209A","-6210T","-6211G","-6212A","-6213C","-6214A","-6215A","-6216C","-6217A","-6219T","A6253G","A6275C","C6289T","G6303A","C6318A","A6324G","A6329G","-6333C","A6349G","A6352C","T6395A","T6427C","C6446T","A6465C","G6526A","G6547A","G6566T","A6578G","A6584G","C6591T","G6605A","G6638A","A6648T","A6684C","C6721A","A6723T","T6724C","A6725T","G6726A","A6727T","C6729G","G6732C","G6771A","G6774A","A6777C","A6785G","T6787G","A6799T","T6815C","-6830A","-6831A","C6835G","T6837G","G6838C","A6842T","A6848T","T6851-","T6852-","T6853-","G6856A","G6905A","G6906T","A6907G","G6935A","C6938T","A6959G","-6961T","-6962A","-6963C","-6964C","-6965A","-6966C","-6967T","-6968A","-6969A","-6970G","-6971G","-6972G","-6973C","-6974A","-6975G","-6976C","-6977A","-6978A","-6979T","-6980G","-6981A","-6982G","-6983A","-6984C","A6985C","A6990G","C6991T","A7033G","A7065G","C7078T","A7090T","A7102T","A7107C","A7136C","C7145G","T7172C","G7190A","A7216G","T7217C","C7250T","G7269A","G7276A","G7291C","T7321C","G7366A","A7402G","A7471G","C7474T","A7540G","C7597T","T7630G","A7646C","G7668A","A7689G","A7690C","C7710T","G7712A","C7747T","G7753A","G7807A","C7843G","T7866G","T7875G","C7913G","C7926T","T7929A","A7948T","G7952A","A7971G","G7977A","T8007C","A8014G","T8016C","G8019A","C8037T","G8050A","G8055A","C8065T","C8080A","C8165A","T8167C","G8173A","T8176C","A8184G","G8328T","A8342C","A8348G","T8366A","G8387T","G8405A","G8407A","C8416T","A8458G","A8469G","C8480A","G8490A","C8494A","G8526C","T8595G","T8597C","C8609T","T8644C","T8770A","A8793C","G8814A","A8827G","C8828T","C8832T","G8846A","A8869G","A8873C","A8874G","G8882A","T8887A","A8892G","A8893T","G8917A","A8922C","T8935C","T9028G","C9181T"],"INT":["E11D","S17T","A91T","S119R","A124T","R269K"],"RT-p51":["D123N","I135V","R172I","Y188H","E194Q","A207T","K220N","Q245K","D248E","D320N","A369T","S379C","D404E"],"RT-p66":["D123N","I135V","R172I","Y188H","E194Q","E207T","K220N","Q245K","D248E","D320N","S379C","I452K","R461K","P510S","V559I"],"gp120":["N5D","E34T","-109A","T110N","-111A","N112T","-114N","-115H","K141Q","P155Q","N157G","N159D","S181T","N204T","A238S","I242V","I244V","S246F","D251N","E262K","K265I","K277T","Q287R","F289G","Y290D","S291I","T292I","G296-","D297-","I298-","R307E","E309Q","N311E","N312D","M328K","T330S","I331S","G351M","E361T","-368N","N369D","-370T","-376G","S379E","-381N","-382S","Q404R","R412S","K418A","F440L","D446N","E479D"],"gp41":["D109E","M115L","R122K","D129S","T136V","F188C","L191C","L204V","T208I","D217N","E223G","D230G","I235T","V238A","A245V","R276K","Y284H","L288I","Q294R","V307I","R342I"],"nef":["S8R","R22Q","P25V","K39R","I43V","S46R","A50T","V58L","E62Q","I101T","E108D","E133V","K151Q","E158K","N162S","M168I","E176G","E177D","R178G","M182K","K184V","I194L","M198T"],"p17":["V7E","K12Q","R20H","L31I","I46L","Q58L","K76Q","D93E","K109R","Q112K","T122K","N124I","S125N"],"p24":["S16T","L83T","I91V","S120N","T178S","R203K","P207S"],"p6":["T8S","G16R","I21V","P35V","K42R"],"p7":["Q9P","R11K","K34R"],"pro":["R20K","E35D"],"rev":["S8N","Q11R",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E11D, S17T, A91T, S119R, A124T, R269K; RT-p51: D123N, I135V, R172I, Y188H, E194Q, A207T, K220N, Q245K, D248E, D320N, A369T, S379C, D404E; RT-p66: D123N, I135V, R172I, Y188H, E194Q, E207T, K220N, Q245K, D248E, D320N, S379C, I452K, R461K, P510S, V559I; gp120: N5D, E34T, -109A, T110N, -111A, N112T, -114N, -115H, K141Q, P155Q, N157G, N159D, S181T, N204T, A238S, I242V, I244V, S246F, D251N, E262K, K265I, K277T, Q287R, F289G, Y290D, S291I, T292I, G296-, D297-, I298-, R307E, E309Q, N311E, N312D, M328K, T330S, I331S, G351M, E361T, -368N, N369D, -370T, -376G, S379E, -381N, -382S, Q404R, R412S, K418A, F440L, D446N, E479D; gp41: D109E, M115L, R122K, D129S, T136V, F188C, L191C, L204V, T208I, D217N, E223G, D230G, I235T, V238A, A245V, R276K, Y284H, L288I, Q294R, V307I, R342I; nef: S8R, R22Q, P25V, K39R, I43V, S46R, A50T, V58L, E62Q, I101T, E108D, E133V, K151Q, E158K, N162S, M168I, E176G, E177D, R178G, M182K, K184V, I194L, M198T; p17: V7E, K12Q, R20H, L31I, I46L, Q58L, K76Q, D93E, K109R, Q112K, T122K, N124I, S125N; p24: S16T, L83T, I91V, S120N, T178S, R203K, P207S; p6: T8S, G16R, I21V, P35V, K42R; p7: Q9P, R11K, K34R; pro: R20K, E35D; rev: S8N, Q11R, T34S, R35Q, S56G, S106H, S107P, V109I; tat: R29S, T57A, A58T, N80V; vif: A20T, H30Y, V31I, E63V, K92R, Q105R, I109T, R132K, T151A, K157R, R167K, H183L; vpr: N28T, G41D, Q77H; vpu: R31K, K37R, L42I, K66R, W77G"}}}]}]},{"name":"results/subtype_trees/CRF13_cpx.nwk","node_attrs":{"div":0.09082,"clade_membership":{"value":"CRF13_cpx"}},"branch_attrs":{"mutations":{"nuc":["G10A","C96T","A133T","-166G","-167G","T213C","G256-","T258C","A261G","A286G","G378A","A398G","G455A","A461G","G495A","C503T","A518G","A527G","G534T","A540C","A557G","A654G","T655C","-694G","C698T","A699G","C700A","G712A","C722T","A869G","C872T","A1002C","T1052C","G1077A","T1229C","T1280C","G1430A","G1493A","G1495A","T1646C","A1657G","G1691A","A1770-","A1771-","G1772-","G1773-","A1774-","G1794A","T1797G","T1828A","A1840G","G1848A","G1858A","T1864C","G1898A","A1920G","C1979A","A1981C","A1984G","T1986G","T1987C","T1997G","G1998A","T1999G","G2027A","G2155A","T2206C","C2281T","G2530A","A2542G","T2632G","C2635T","C2694A","A2698G","A2699G","G2707A","A2710G","G2714A","A2716G","A2727G","C2749T","T2776C","C2831T","G2914A","G2998A","G3016A","C3023T","A3034T","A3046C","T3059G","C3060A","A3061G","G3094A","C3100A","T3132A","A3167G","T3181A","T3197C","A3217G","A3218G","A3220G","A3229G","C3252T","A3268C","A3276G","A3293G","C3294T","A3334T","G3340A","T3368C","A3378G","A3387C","G3391A","G3398C","T3414A","T3445A","C3449T","A3457G","G3483A","G3491A","T3517C","A3630G","G3664A","T3668C","A3676G","C3751T","G3756A","A3772G","T3793A","A3866G","C3892T","T3904C","C4138T","G4156A","C4204T","T4391A","T4405A","G4549A","A4692G","A4784G","G4818A","A4847T","C5050A","T5062C","T5084G","G5086A","G5087A","G5131A","A5186C","C5215T","A5352G","A5355G","G5363A","G5372T","C5397A","A5471T","C5478T","T5490C","T5491A","A5495C","G5496A","C5551T","G5557A","A5563C","C5579T","A5594G","G5599T","C5602T","A5613T","A5621T","G5711A","A5718G","G5729A","A5734T","T5736G","A5748G","A5751G","C5769A","A5781G","C5797T","-5799G","T5801C","G5802A","G5803A","A5806C","G5808T","-5817A","-5824A","C5827T","T5860C","C5884T","A5896T","G5963A","T6024A","C6026T","A6030T","A6031C","A6037G","T6064C","C6067G","A6076G","G6086A","A6087C","G6088A","T6101C","G6110C","A6132G","G6133T","T6148C","T6154C","C6160T","T6169C","-6174C","-6175C","T6178C","T6181C","T6187C","T6193C","-6225A","T6246A","C6247T","A6253G","A6263T","A6273G","A6276G","G6277A","G6290T","G6311A","T6325G","A6326G","A6327G","T6328A","G6346A","C6347T","A6354G","T6395A","T6427C","A6430G","A6464G","A6490G","T6523C","G6532A","T6562C","G6577A","T6582A","A6583G","T6598C","A6602T","G6605A","C6613T","A6636C","G6638A","A6640G","T6641C","A6648G","C6667T","A6742G","T6766C","T6769C","G6773A","C6810A","C6824T","-6835T","A6840C","A6854G","A6855C","C6857A","C6858A","A6859T","T6860C","C6861A","C6874T","C6875T","T6949C","-6952T","A7015T","A7033G","A7037T","C7045T","G7088C","T7099A","A7101G","A7102G","T7114C","G7132A","G7160A","C7266G","A7290C","G7309T","A7373C","A7426G","G7428A","T7433C","G7453T","C7469A","A7477G","G7517A","G7519A","C7561A","C7597T","T7609C","T7625C","T7627G","G7628A","A7629G","T7636A","A7655C","G7658C","G7668A","A7688G","A7690C","C7691A","A7701G","A7741G","A7763C","G7790A","C7792T","T7801A","C7843T","T7888G","C7935A","A7936C","A7937C","C7951A","C8171T","G8173A","A8184G","G8194A","A8208C","A8221T","C8242G","A8263G","T8268G","G8276A","C8277T","T8281G","C8286G","A8311C","T8323C","T8337A","A8342C","A8348T","T8375G","T8384A","G8387T","C8406A","G8424A","A8425C","A8469G","C8480T","C8485T","C8491-","A8493-","T8495-","C8500A","T8501G","T8507C","G8516A","G8537A","T8567A","C8603T","A8604G","T8675C","C8690T","A8754T","C8755G","C8756T","A8792C","G8795A","A8804G","G8822A","A8829T","T8843A","T8847A","G8864T","G8882A","G8915A","C8966A","A8970G","G8971-","G8981A","C9073T","C9078T","C9181T"],"INT":["D6E","I31V"],"RT-p51":["A200E","I202V","E207K","K211R","S322E","D335E","F346Y","R358G","I375V","T386I","Q394R","T400V","E413D","Q428R","K431T","V435L","F440Y"],"RT-p66":["A200E","I202V","E207K","K211R","S322E","D335E","F346Y","R358G","I375V","T386I","Q394R","T400V","E413D","Q428R","K431T","V435L","F440Y","R463K","V466I","K512R"],"gp120":["E59G","E78T","E86Q","K93S","-105N","-107T","F131Y","I133M","I137L","K140R","K141R","A146S","D157E","N158G","N167S","S181T","N204E","I243K","I249F","T250S","D251N","N261T","S263P","K265R","H280R","H324Y","N334A","P335N","S336H","-370D","-373S","-376G","I395F","T416R","K418E","T471S","K474R","E479T"],"gp41":["I24L","S42N","Q56K","V72I","Y108Q","D109S","I118L","E119Q","R122K","N133R","K154Q","D163N","N166K","N195K","P211H","N212H","N239S","N251S","Q294R","V322G","A325I","A328G","L345Q"],"nef":["E28T","I43V","T48M","A49-","A50-","P53E","A56T","S88G","I133V","T138C","C169S","E174D"],"p1":["N9S"],"p17":["L31M","A54T","G62R","A67S","K69Q","I107A","K120R","T122E","S126N"],"p24":["A116T"],"p6":["K31-","D32-","S40A"],"p7":["Q9P","R10K"],"pro":["G17E","E34K","K41R","Q61N","I62M","L63S","C67E","V77I"],"rev":["K30P","A108V","V109I","E116N"],"tat":["N7K","Y32F","L39I","K40T","T57R","P59S","G61S","K63Q","P68L","I69V","Q76T","P81Q"],"vif":["K36G","E78K","T155N","R167K","G182D"],"vpr":["N28H","I83V","I84V"],"vpu":["Q2N","E5Q","D40E","R41K","I43L","-73N","-74F"]},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E6D, I101L, G163T, E256D; RT-p51: K39Q, E40D, K49R, A122V, I135T, P176Q, E177N, P243S, S251I, E335G, R390K; RT-p66: K39Q, E40D, K49R, A122V, I135T, P176Q, E177N, P243S, S251I, E335G, R390K, T468S, L517I; gp120: N5K, N57K, A59P, N64E, N71K, T107N, -109F, -111I, -114N, -115S, -116T, -117M, -118R, E124G, R138S, Q142L, I156L, E157G, G158E, E240G, A261K, K262D, A288T, R307K, E309D, -326N, K329T, T330K, N369G, -375Q, M398I, N434-, N435-, N437-, S471T, R474K; gp41: V2A, G3L, L4-, L24I, N42S, R46M, E49Q, L54M, S102T, N105K, S107N, I130E, I135L, N163D, K166N, R214E, W286G, G293V, K297R, I298N, I301V, T306A, E313G, I318V, I321T, I325V, A343V; nef: D38G, -49S, T51-, Y81F, A156N, S188A, M198L; p1: S8P; p17: K15Q, L46I, Q59R, C62V, R91K, K95R, N110S; p24: V11I, V27I, I91V, S102G, R154K, T178S, T200I, R203K, A204G, P207S, T210S, G225S; p6: P23S; p7: K10R, S12N; pro: R14K, E17G, I20L, K34T, I72T; rev: T14R, E32G, H53N, S54T, T62A, L73F, L78I, G99R, P100S, S103P, V104G, S107P, I109V, N116K; tat: Q13H, I39T, T40K, R60S, N64D, G79R; vif: K20T, T67A, R93K, H127D, Q187H; vpr: N15H, H45L, T49N; vpu: A7V, I18L, E29Q, K32R, Q36E, L42I, E62D"}}}]},{"name":"CRF13_cpx_NODE_0000005","node_attrs":{"div":0.10629999999999999,"clade_membership":{"value":"CRF13_cpx"}},"branch_attrs":{"mutations":{"nuc":["A980G","C1002T","C2596T","C4645A","A4774G","A5462G","T5600A","-5603T","T5787C","-6218G","G6345A","A6682G","G6809A","A6821G","-6831A","G6935A","A7152G","T7156A","T7165C","G7166-","A7167-","G7168-","A7169-","C7170-","C7171-","G8017C","G8105A","C8202T","A8922G","C8934A","T8988-"],"gp120":["-122E","R164K","-433S"],"gp41":["A268T"],"nef":["I194V"],"p2":["S8T"],"p24":["L83M","I91F","I96L"],"rev":["E57Q","S86N"],"tat":["K29R"],"vif":["K63R"]},"labels":{"aa":"gp120: -122E, R164K, -433S; gp41: A268T; nef: I194V; p2: S8T; p24: L83M, I91F, I96L; rev: E57Q, S86N; tat: K29R; vif: K63R"}},"children":[{"name":"KP718926","node_attrs":{"div":0.14093,"accession":"KP718926","clade_membership":{"value":"CRF13_cpx"},"country":{"value":"CM"},"date":{"value":2008.0},"Strain_name":{"value":"833_62"},"LANL_subtype":{"value":"CRF13_cpx"}},"branch_attrs":{"mutations":{"nuc":["C213T","G278A","G280-","G286A","A304T","A378C","A417C","A563G","A576T","C577T","A585G","C586T","A592C","A604G","G641T","A677C","C713T","A716G","T788A","T917C","A1017T","T1037C","G1090A","T1100A","C1103T","C1187T","A1196G","C1295T","T1322C","A1367G","T1446A","A1457T","G1458-","C1459-","C1460-","T1484C","C1491T","G1526A","G1562A","A1588G","A1607G","A1616T","G1619A","G1673A","G1690A","-1746C","-1747C","-1748T","T1752G","C1754-","C1755-","C1756-","A1762C","A1828C","G1840A","T1895C","A1990G","T2087C","A2212T","A2215T","G2221A","A2248G","G2275A","A2311G","T2440C","C2453T","T2608C","A2612G","A2626C","G2662A","A2713G","C2720T","T2749C","C2806T","C2822T","T2863C","G2926A","C2927A","A2929T","C3006A","G3085A","A3088G","T3112C","C3133T","C3140T","A3151G","G3173A","A3192G","A3200T","G3236A","G3334A","T3505G","G3617T","A3655G","C3691T","A3793C","A3794C","G3836A","A3876G","T3967C","C3995A","G4268A","A4397T","A4549G","G4622A","T4676C","G4677A","T4678A","T4679G","G4696A","A4737G","T4769G","C4914T","T5006A","C5051T","G5069A","T5072C","A5085G","C5162T","C5237T","T5275G","A5282T","A5293G","C5306T","A5312G","A5345G","A5397C","G5448A","T5492C","G5535A","C5556A","G5561A","A5587G","A5611C","T5616C","C5621A","A5628T","G5635A","T5641C","A5643T","C5663T","A5664G","G5665A","G5736A","T5739G","G5741A","G5781T","G5791-","A5792-","G5793-","G5794-","A5795-","A5796-","T5797-","T5798-","G5799-","C5801A","A5802G","A5803G","A5805G","C5806T","T5808G","-5809G","-5810C","-5811A","A5848G","G5858A","T5861G","C5866A","G5917A","A5918G","C5920T","C5924T","T5956A","T6025A","T6030A","G6055A","A6059G","A6066C","C6110G","T6133G","C6148T","T6163-","A6164-","A6165-","T6166-","A6167-","A6168-","C6169-","T6171-","C6172-","A6173-","C6174-","C6175-","A6176-","A6177-","C6178T","A6179G","C6181G","-6183A","C6186T","-6189C","A6192C","-6195A","-6196C","-6198G","-6200A","-6201C","-6203A","-6204C","-6205T","-6206A","-6207A","-6208C","-6209A","-6210T","-6211C","T6213C","-6214T","A6259G","G6267A","G6273A","G6276A","A6303G","G6325T","G6326A","A6328T","A6336G","T6337A","A6338G","G6339A","T6340A","T6409C","A6450G","T6460G","G6466C","G6569A","A6574T","A6576G","A6577G","G6583A","G6593A","A6606G","C6619T","C6636A","T6643C","A6647G","C6660T","C6692A","G6716A","T6763C","A6776G","C6790T","A6810C","C6812A","-6830G","-6832T","C6840A","A6841T","G6854A","C6855A","T6856A","A6877G","A6881G","G6905A","T6916C","T6932A","C6936A","C6937A","A6958C","T6961C","G6962T","-6967G","-6977C","-6978A","G6996A","T7003-","A7007C","A7013G","C7014T","G7048A","G7072A","G7101A","G7102T","G7106A","A7107G","G7145A","T7153G","A7154G","A7155C","A7216G","A7269G","C7313A","G7322C","A7428G","A7519T","A7522G","C7582T","T7618C","C7655T","A7685T","G7702A","A7773G","A7782G","T7796A","A7799C","A7801G","A7822C","A7837G","T7877G","T7879C","A7887G","A7903T","C7936A","A7962G","G7977A","G7992A","G7995A","A8023G","C8047T","C8146G","T8155C","T8164C","T8172C","T8182A","G8201A","T8214A","A8222C","G8228A","G8263A","T8290C","A8326G","G8329A","G8349A","G8354A","T8366C","C8386A","T8387G","A8400T","A8409G","A8447G","A8502C","G8503A","G8506A","A8536G","C8543T","A8652C","C8661A","G8666T","A8701T","A8718G","A8719G","A8739G","C8747T","T8775C","C8792T","A8851T","G8861A","T8864A","T8887A","C8906T","A8915G","C8921T","T8939C","G8942A","A8947T","-8971G","-8974T","-8975C","-8976T","-8978A","-8979C","-8980C","G8983A","T8986A","C8992T","C9028T"],"INT":["E6D","K7Q","A21T","K34R","L74M","V165I","I208L","G283S"],"RT-p51":["K39N","E40D","T173A","E177D","P243S","Q278N","A304E","A360T","K366R","T369S","V381I"],"RT-p66":["K39N","E40D","T173A","E177D","P243S","Q278N","A304E","A360T","K366R","T369S","V381I","A508S"],"gp120":["A2T","S3A","D4E","T22A","D34E","N57K","A59D","M67I","K69E","N71T","Q86E","S93R","N104E","N108-","T110-","N112T","-114S","-115T","-116T","-117N","-118I","-119T","-120M","-121S","-123R","R138K","R140K","R141K","K150R","K199R","D202E","E204D","E239K","E240D","E241G","E247K","F249I","N251S","A261D","R265G","T269I","A288T","K308E","K319T","T323A","L325F","-326D","K329N","A334K","I343V","G351R","S360T","A361K","E368D","D370Y","-372Q","S373-","G381E","T385P","T387V","M398I","M406I","R416N","D418S","G430N","G431D","N432E","N435R","-436A","K472R"],"gp41":["L4I","V7L","N42S","T128S","N157S","N160S","S165T","K166Q","S192A","K195R","H211Q","E220G","G225E","R231K","L290S","A300I","L304Y","I307L","V309I"],"nef":["G3S","A15E","I20L","T23A","S54H","C55Y","E65G","K104Q","Q107K","E108D","Y120F","N126G","Q170L","M173I","D174E","M182K","Y202F"],"p17":["K15Q","K28Q","C62G","T81L","T84V","Y86S","Q90R","E102D","K114N"],"p2":["A12-"],"p24":["S120N"],"p6":["R4K","P23-","S24P","-26A","Q28P","*50S"],"p7":["P9S","K41R"],"pro":["I64M"],"rev":["G7D","T14K","V16I","P30T","I59V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E6D, K7Q, A21T, K34R, L74M, V165I, I208L, G283S; RT-p51: K39N, E40D, T173A, E177D, P243S, Q278N, A304E, A360T, K366R, T369S, V381I; RT-p66: K39N, E40D, T173A, E177D, P243S, Q278N, A304E, A360T, K366R, T369S, V381I, A508S; gp120: A2T, S3A, D4E, T22A, D34E, N57K, A59D, M67I, K69E, N71T, Q86E, S93R, N104E, N108-, T110-, N112T, -114S, -115T, -116T, -117N, -118I, -119T, -120M, -121S, -123R, R138K, R140K, R141K, K150R, K199R, D202E, E204D, E239K, E240D, E241G, E247K, F249I, N251S, A261D, R265G, T269I, A288T, K308E, K319T, T323A, L325F, -326D, K329N, A334K, I343V, G351R, S360T, A361K, E368D, D370Y, -372Q, S373-, G381E, T385P, T387V, M398I, M406I, R416N, D418S, G430N, G431D, N432E, N435R, -436A, K472R; gp41: L4I, V7L, N42S, T128S, N157S, N160S, S165T, K166Q, S192A, K195R, H211Q, E220G, G225E, R231K, L290S, A300I, L304Y, I307L, V309I; nef: G3S, A15E, I20L, T23A, S54H, C55Y, E65G, K104Q, Q107K, E108D, Y120F, N126G, Q170L, M173I, D174E, M182K, Y202F; p17: K15Q, K28Q, C62G, T81L, T84V, Y86S, Q90R, E102D, K114N; p2: A12-; p24: S120N; p6: R4K, P23-, S24P, -26A, Q28P, *50S; p7: P9S, K41R; pro: I64M; rev: G7D, T14K, V16I, P30T, I59V, T62A, P67S, P100A, S103P, S106P, S112T; tat: K7N, I39T, R60Q, S62N, K71E, T76N, K85E; vif: V31K, G37E, I51V, D61E, H110Y, N140K, K167E; vpr: H45Y, I60L, I63M, I70V; vpu: N2H, V10I, A19V, V20I, D44E, R45K, E58D, N81D"}}},{"name":"AF460974","node_attrs":{"div":0.12930999999999998,"accession":"AF460974","clade_membership":{"value":"CRF13_cpx"},"country":{"value":"CM"},"date":{"value":1996.0},"Strain_name":{"value":"96CM_4164"},"LANL_subtype":{"value":"CRF13_cpx"}},"branch_attrs":{"mutations":{"nuc":["G202A","G481C","G519T","A521C","G647A","A658G","G755A","T788C","G977A","C988A","A1017C","A1077G","A1097C","A1101G","C1136T","A1157G","G1184A","G1247A","A1433C","C1456T","G1458A","C1460A","C1478T","A1497G","T1502G","C1536G","A1616G","T1653C","G1727C","T1782C","C1853T","A1966C","A1982T","G1984A","G2156A","T2158C","T2315C","C2460T","T2476C","C2536T","A2715G","G2716T","C2822G","A2825G","C2848T","C2885T","A2989G","A3043G","G3093A","A3099G","C3174T","G3221A","G3264A","G3293A","T3294C","C3307A","C3346T","A3370G","G3427A","G3439A","A3568C","T3628C","A3727G","A3805T","G3816A","G3834A","G3925A","A4051G","A4130G","C4140T","C4428T","T4606G","A4688G","T4727G","C4761T","T4805C","G4856A","T4912C","A4952T","A5015G","A5058C","T5081C","G5199A","T5203C","G5225A","A5277T","T5311C","A5360G","A5415C","T5457C","A5555G","G5565A","A5567G","C5590T","C5620T","C5639G","A5659G","T5660C","A5700G","G5712T","G5748A","A5865G","A5907G","G5954A","A5955C","T6025C","T6026A","A6061C","G6067T","A6086G","C6087A","T6151G","-6170G","-6183T","A6188-","C6190-","A6191-","A6192-","C6193-","A6194-","A6197-","C6199-","C6202-","-6214A","A6215T","T6216C","G6222A","A6226T","T6385C","A6406T","G6464A","A6578G","A6582T","A6599T","A6605G","C6612T","C6637T","G6644A","T6733A","C6758T","G6774A","T6793G","C6800G","C6822A","T6824C","T6827C","-6830A","-6832C","T6838G","A6848G","G6875A","A6957C","G6980A","G6981A","T6983G","-6998T","-6999C","-7000A","-7001A","-7002A","T7047A","G7054A","G7067T","G7094A","T7095C","T7144G","T7153C","A7154C","A7155T","G7289A","T7309G","A7318G","G7423A","A7533G","T7622A","A7676G","G7677A","A7679C","T7681G","G7688A","T7692C","T7783C","A7801C","G7873A","C7874A","A7880G","G7888T","A7903G","A7935G","C7937A","A7964G","G7965A","C8033A","G8055A","C8065T","C8131G","T8167C","G8317A","G8388A","C8437T","G8479A","G8501A","A8537T","T8646C","G8666A","G8732A","C8853T","G8875A","A8918G","C8948T","G8970A","-8971C","T8972A","A8977-","A8981-","G8982-","G8983-","A8984-","C8985-","T8986-","T8987-"],"INT":["E10D","R14K","R20K","M50I","S119G","T122I","T218I"],"RT-p51":["V21I","A122V","K207S","P243A","I244V","G333E","E335G","A360V","A376T","R390K","V400T","D404E"],"RT-p66":["V21I","A122V","K207S","P243A","I244V","G333E","E335G","A360V","A376T","R390K","V400T","D404E"],"gp120":["D4G","K18R","D34T","L58M","A59V","K69N","T78E","N105-","I106-","T107-","-109V","-111N","N113I","-114T","-115I","-116S","-123K","E124D","E204K","I242V","K243M","N251D","A253V","V264I","A291T","T292G","D294I","H302Y","R307K","Q316E","K320Q","T323E","Y324H","I332V","V341I","A361T","E368A","-372K","S373A","G376-","S377-","-382S","-383N","M398K","A405S","V414T","N434L","-436E","N437T","E438-","T439-","A479T"],"gp41":["K77R","S107T","S125D","N126Q","D129N","I130T","K166N","L191I","I193V","K195N","H211R","P212T","R221E","D230G","L244I","S251N","A300V","L304F"],"nef":["V16I","A32V","S46N","E65D","Y102H","V133I","H171Y","R178K"],"p1":["S8P"],"p17":["G49A","Q108R"],"p2":["A7V","G9-","A10-"],"p24":["P86Q","T116A","I124V"],"p7":["R11G","S12R","L24V"],"pro":["M62L"],"rev":["T14A","R17K","I18V","P30H","K39R","T62D","L73F","Q95E","S107P"],"tat":["Q13H","N64S","Q72*","T76A","E86K"],"vif":["V7G","N47K","M109T","K122N","K158Q"],"vpr":["R32K","G41S","E58V"],"vpu":["Q5S","A11G","I18A","K35N"]},"labels":{"aa":"INT: E10D, R14K, R20K, M50I, S119G, T122I, T218I; RT-p51: V21I, A122V, K207S, P243A, I244V, G333E, E335G, A360V, A376T, R390K, V400T, D404E; RT-p66: V21I, A122V, K207S, P243A, I244V, G333E, E335G, A360V, A376T, R390K, V400T, D404E; gp120: D4G, K18R, D34T, L58M, A59V, K69N, T78E, N105-, I106-, T107-, -109V, -111N, N113I, -114T, -115I, -116S, -123K, E124D, E204K, I242V, K243M, N251D, A253V, V264I, A291T, T292G, D294I, H302Y, R307K, Q316E, K320Q, T323E, Y324H, I332V, V341I, A361T, E368A, -372K, S373A, G376-, S377-, -382S, -383N, M398K, A405S, V414T, N434L, -436E, N437T, E438-, T439-, A479T; gp41: K77R, S107T, S125D, N126Q, D129N, I130T, K166N, L191I, I193V, K195N, H211R, P212T, R221E, D230G, L244I, S251N, A300V, L304F; nef: V16I, A32V, S46N, E65D, Y102H, V133I, H171Y, R178K; p1: S8P; p17: G49A, Q108R; p2: A7V, G9-, A10-; p24: P86Q, T116A, I124V; p7: R11G, S12R, L24V; pro: M62L; rev: T14A, R17K, I18V, P30H, K39R, T62D, L73F, Q95E, S107P; tat: Q13H, N64S, Q72*, T76A, E86K; vif: V7G, N47K, M109T, K122N, K158Q; vpr: R32K, G41S, E58V; vpu: Q5S, A11G, I18A, K35N"}}}]}]},{"name":"CRF13_cpx_NODE_0000006","node_attrs":{"div":0.10004,"clade_membership":{"value":"CRF13_cpx"}},"branch_attrs":{"mutations":{"nuc":["G519A","G2459A","A3211G","G5199A","G5712T","-6170A","-6189T","-6218G","A6599T","T6793C","-6831G","-6832A","-6967T","-6970C","-6971A","-6972G","-6973C","-6974A","-6975C","G7440T","G7992A","C8220G","C8992T"],"RT-p51":["E122K"],"RT-p66":["E122K"],"gp120":["K329T","-374T","-433N"],"gp41":["R46M","I130T","L290V","T306S"],"nef":["T51-"],"vpr":["R32K"]},"labels":{"aa":"RT-p51: E122K; RT-p66: E122K; gp120: K329T, -374T, -433N; gp41: R46M, I130T, L290V, T306S; nef: T51-; vpr: 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I101L; RT-p51: E40D, K49R, P170T, A200T, D335G; RT-p66: E40D, K49R, P170T, A200T, D335G; gp120: K37A, G57E, K93Q, N105T, -107N, -109S, R201K, D251N, E265T, -372A, P412Q, L425I, G431A, S453N, K462R; gp41: Y108F, S133N, E137Q, L209H, S277L; nef: V16I, Q22R, F120Y; p1: N9S; p17: T84V; p24: T110N; p6: A22T, -23P, E32D, L38M; p7: K3R; tat: Q60P, L74I; vif: R37K, K63E, Q105R, N140K; vpu: I20V, Y30I, A48T, K63T, -69D"}},"children":[{"name":"AY371169","node_attrs":{"div":0.13337000000000002,"accession":"AY371169","clade_membership":{"value":"CRF25_cpx"},"country":{"value":"CM"},"date":{"value":2002.0},"Strain_name":{"value":"1918LE"},"LANL_subtype":{"value":"CRF25_cpx"}},"branch_attrs":{"mutations":{"nuc":["G354A","A370G","A398G","A404G","A411C","A412G","A418G","G480A","T485C","C496G","A516C","A520G","G524A","C539T","A605G","G667A","C679A","G690A","G755A","A758G","A759C","T760C","G761A","G762A","C779A","T884C","G908A","A932G","A978C","A1025G","G1031A","T1040C","A1046G","G1090A","G1109A","C1292T","A1343G","T1385C","T1422C","T1427A","T1505C","G1508A","G1553A","T1559A","G1592T","A1642G","T1646C","T1682C","T1722C","A1733G","C1768A","G1846A","C1888T","C1903T","C1979G","C1985G","T1987C","A1988T","G2056A","G2065A","T2080C","T2269C","A2290G","C2296T","G2392T","T2393C","G2406A","A2414T","A2455G","A2545G","G2583C","A2601G","A2611G","C2615A","G2707A","C2720T","C2740T","G2821A","G2830A","A2839G","C2909G","A2918C","A2925G","C2985T","G3029A","C3067A","A3080G","C3095G","A3097C","G3124A","A3164G","G3169A","A3200G","A3204C","A3217G","A3230G","C3266T","A3268G","C3322A","C3391A","A3456G","C3787T","T3793C","C3908T","A3979G","T3991C","T4039A","A4112G","T4140C","T4147C","G4228A","G4262A","G4263C","T4441C","C4471T","A4495G","A4567G","A4725C","G4766A","G4856A","A4862G","G4981A","A4988T","A5038G","A5057G","A5090G","A5112G","G5128A","T5194C","T5197C","G5212A","A5233G","C5237T","A5278G","C5333T","C5356T","C5412T","C5415T","G5427A","A5431G","A5432G","G5437C","T5462G","C5478T","C5491A","C5496G","A5535T","G5556A","G5557A","T5562C","T5602A","C5614T","C5627T","C5660T","T5687A","A5689C","A5727T","G5775A","C5833G","C5869A","G5893A","G5915A","C5923T","A5926G","G5955A","T5956A","G5972A","T5980C","C6026A","A6065G","C6165G","G6170A","-6175C","A6177T","T6178C","G6180A","T6184A","T6187C","A6195G","T6196C","A6200-","A6212G","G6215A","T6216A","-6217T","-6220C","A6222G","-6225A","C6241T","A6251G","A6320C","A6338T","G6339C","T6340A","C6347T","A6350C","A6354G","G6368A","C6412T","G6466T","A6476G","A6489C","A6525G","G6526A","A6532G","C6613T","A6623C","G6640A","C6648T","A6649G","G6693A","G6706A","A6716G","T6733A","G6767A","C6776T","A6801G","C6807T","A6809G","-6830A","-6832G","-6835C","A6840T","A6848T","C6850A","T6856C","A6858G","A6881G","G6894T","T6916C","G6935A","A6974-","A6985T","-6989G","-6991G","-6994A","-6995G","-6996A","-6997T","-6998G","-6999G","-7000C","-7008A","C7020A","A7032G","A7101G","G7102A","A7106T","T7146C","A7152C","T7153A","A7154G","A7155C","G7160A","A7162C","C7170T","C7171A","C7264T","A7279G","A7282G","G7307A","T7309C","T7323C","A7339G","G7343A","T7403C","A7427G","T7432C","T7627C","G7628A","A7666G","A7690G","A7713T","A7726G","T7774C","A7782G","G7790A","A7791G","G7868A","C7874A","A7931C","A8011C","G8019A","A8029G","C8044A","A8152G","G8159T","T8167C","T8171C","T8172A","T8182A","G8234A","T8235C","A8240G","G8264A","T8268C","T8291C","G8292T","A8297G","A8303G","G8304T","G8365A","T8366C","C8369A","A8370G","A8372-","G8373-","T8374-","A8409G","C8411A","A8412G","T8440C","T8450C","G8458A","C8471T","A8489G","T8492C","C8503A","C8510T","G8570A","G8588A","T8636A","A8643G","A8647G","C8648G","A8652C","A8657G","C8666A","G8682A","A8726G"],"INT":["I113V","I122T","G163T"],"RT-p51":["R104K","T107S","S163T","E169G","P272A","K275Q","K277R","A297V","D324E","I329V","Q334D","R357G","T369A","E370A","S379G","T386I","D432E"],"RT-p66":["R104K","T107S","S163T","E169G","P272A","K275Q","K277R","A297V","D324E","I329V","Q334D","R357G","T369A","E370A","S379G","T386I","D432E","K454R"],"gp120":["N5K","E21K","S34K","V40I","E57D","L58I","N71D","V106N","N111V","N114R","S115E","I133V","N158D","-159D","N161S","I166L","N167S","A172T","T208A","K212T","K224R","T255N","I257L","T265M","T288A","V305I","T308S","E316G","A318V","K319A","N328T","K329I","I332S","I343V","S347I","G361S","-370S","-379G","-380T","-381D","-382G","T385N","P389Q","K393R","T418S","-433T","N434A","-436N","N437T","T439I"],"gp41":["V2I","V7A","A14T","S42G","D109N","Q137L","N160S","D163S","A189T","L191I","T210P","E220G","S239N","D247E","G286W","L290Q","V311T","N313D","V321I","V322A","Y330L","I332V","R334V"],"nef":["S8N","S9R","I10V","V11-","A28E","V33A","R39K","D98E","I101V","H102W","K104Q","V114I"],"p1":["K4R"],"p17":["V7I","K12R","K26R","K28R","G49S","A54G","M61L","E62G","S111N","T115K","A119T"],"p24":["M10P","V11I","I83L","S120N"],"p6":["F15L","P30Q"],"p7":["E42D"],"pro":["Q61E","L63V","I64L","M89I"],"rev":["D7V","R14Q","V16A","Y28S","I55L","T61A","I102V","G104V","S107P","V108A","S112T"],"tat":["K19G","A21P","K29R","L39I","N40K","R53S","G61S"],"vif":["N47H","R132K","E134D","K151R","K176E","R181K"],"vpr":["Q3R","H45Y","T84I"],"vpu":["P3S","S7F","A18V","F27Y","I28L","E40D","-72A"]},"labels":{"aa":"INT: I113V, I122T, G163T; RT-p51: R104K, T107S, S163T, E169G, P272A, K275Q, K277R, A297V, D324E, I329V, Q334D, R357G, T369A, E370A, S379G, T386I, D432E; RT-p66: R104K, T107S, S163T, E169G, P272A, K275Q, K277R, A297V, D324E, I329V, Q334D, R357G, T369A, E370A, S379G, T386I, D432E, K454R; gp120: N5K, E21K, S34K, V40I, E57D, L58I, N71D, V106N, N111V, N114R, S115E, I133V, N158D, -159D, N161S, I166L, N167S, A172T, T208A, K212T, K224R, T255N, I257L, T265M, T288A, V305I, T308S, E316G, A318V, K319A, N328T, K329I, I332S, I343V, S347I, G361S, -370S, -379G, -380T, -381D, -382G, T385N, P389Q, K393R, T418S, -433T, N434A, -436N, N437T, T439I; gp41: V2I, V7A, A14T, S42G, D109N, Q137L, N160S, D163S, A189T, L191I, T210P, E220G, S239N, D247E, G286W, L290Q, V311T, N313D, V321I, V322A, Y330L, I332V, R334V; nef: S8N, S9R, I10V, V11-, A28E, V33A, R39K, D98E, I101V, H102W, K104Q, V114I; p1: K4R; p17: V7I, K12R, K26R, K28R, G49S, A54G, M61L, E62G, S111N, T115K, A119T; p24: M10P, V11I, I83L, S120N; p6: F15L, P30Q; p7: E42D; pro: Q61E, L63V, I64L, M89I; rev: D7V, R14Q, V16A, Y28S, I55L, T61A, I102V, G104V, S107P, V108A, S112T; tat: K19G, A21P, K29R, L39I, N40K, R53S, G61S; vif: N47H, R132K, E134D, K151R, K176E, R181K; vpr: Q3R, H45Y, T84I; vpu: P3S, S7F, A18V, F27Y, I28L, E40D, 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vpr: P37L, I70T, Q86R, S96P; vpu: P3S, I21V, K63T, 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Q2T"}},"children":[{"name":"EU697909","node_attrs":{"div":0.14382999999999999,"accession":"EU697909","clade_membership":{"value":"CRF43_02G"},"country":{"value":"SA"},"date":{"value":2003.0},"Strain_name":{"value":"J11456"},"LANL_subtype":{"value":"CRF43_02G"}},"branch_attrs":{"mutations":{"nuc":["C44T","G46A","T71C","A311C","C362T","G378A","G424A","G438A","A440T","A509G","A515G","G541A","A543G","C558A","C583T","A619G","C623T","G687A","C707T","A708G","T771C","C827T","A932G","C988A","A1025G","C1060A","C1330A","A1352G","G1498A","A1501T","T1535C","T1559C","A1588G","A1776G","G1779A","C1826T","G1828A","T1987C","A2127G","C2263T","C2499A","G2704A","T2776C","A2975C","C3178T","G3220T","G3221T","A3230G","C3449A","G3477A","A3489G","T3497A","C3498A","A3619T","A3737G","A3835G","G3859A","C3994T","T4039A","C4132T","C4149T","G4244C","C4288T","A4303T","C4471A","T4670C","A4684G","A4694T","A4760T","A4775G","T4827C","G4855A","A4865C","C4898T","A4936G","T4957C","A4958G","A4968T","A5048G","C5056T","C5148T","A5282C","C5306A","G5385A","A5433T","T5584C","C5612T","A5621C","A5644G","T5686C","G5700A","G5720A","C5734A","G5858A","A5867C","C5869A","T5911C","T5941C","A5965G","T5992C","A6023T","T6025C","G6029A","T6085G","C6160A","-6170A","-6177C","-6179T","-6180G","A6182C","A6191G","T6193C","-6196T","-6202G","-6205G","-6206A","-6208A","T6210C","T6212C","-6213T","-6214A","-6215C","A6216G","-6217T","-6219T","A6234C","T6242A","A6281G","G6292T","T6310C","A6329G","G6333A","A6336G","T6337G","A6456G","G6457A","T6460A","A6461G","A6462G","G6463A","A6471G","C6482G","A6535G","C6551T","A6573G","C6598T","G6605A","T6618A","A6648C","G6743A","C6758T","G6767A","T6787G","A6791G","A6800-","A6801-","T6802-","G6803-","T6804-","A6805-","A6806-","A6811-","A6814T","C6815G","A6820G","A6821G","A6822C","G6824C","C6826A","T6827C","T6829A","-6830G","-6831G","-6832A","T6841C","T6844A","C6856A","T6857C","T6860C","C6861A","A6863G","A6889T","A6926G","G6936A","C6951-","-6958C","T6961C","-6963G","-6964A","-6967T","C6984T","-6990C","-6991A","-6992T","-6994A","-6995G","-6996G","-6997A","-6998T","-6999C","-7000T","-7001A","-7002A","-7003T","-7004G","-7005A","-7006T","-7007A","-7008C","-7009T","T7099C","-7162T","-7164C","A7169G","C7170T","T7213C","G7322T","G7343A","C7684T","C7691G","C7702G","G7729A","A7741G","G7759A","A7782G","T7796A","G7818A","A7935G","C7940T","A7941G","C8047T","A8069T","A8099G","T8101G","G8102A","C8103T","A8152G","G8173A","G8213A","T8321C","A8386C","A8396G","A8435G","T8507C","G8528A","T8531C","G8554A","C8676T","T8687C","A8739G","G8799A","A8834G","G8917A","A8918C","T8923G","C8957T","A8970T","G8991A","A8998G"],"INT":["A125V","E157Q","D232E"],"RT-p51":["K11R","T135K","T294P","A376S","S379G"],"RT-p66":["K11R","T135K","T294P","A376S","S379G","L452I","R461K","K465R","S468N","I548V"],"gp120":["A2T","N5Q","T57S","E59K","H77Q","N102K","-106I","-107T","N108C","-109P","-111G","T112D","C113S","-114T","K127T","S130T","T143A","N158G","-159A","D162S","K201R","D202E","K203G","N206S","Q210E","E240G","D251N","I255N","E265A","A291T","T292G","D294I","D297N","H302Y","V305I","E312N","M313T","L314-","K315-","N316-","V317-","Q320-","L321-","K323-","F325-","N328I","T330N","N334K","S335P","S336H","T337A","N358D","G361E","-379N","-380T","-381S","-382G","-383S","-384D","-385T","T439V"],"gp41":["V7F","A14T","Q130E","S133R","N160S","S165T","R172K","H211R","Q213W","S256C","I266V","A267I","V304I"],"nef":["E15A","R71K","I133V","V153I","R192N","I194R"],"p17":["A15T","R30K","V35I","R69K","T70A","L75I","A83V","K95R","A118T","S125G"],"p24":["S14P","T110N","T200N","S207T"],"p6":["K33E","E34K","W50*"],"p7":["R11K","N12I","K41R"],"rev":["P31L","H67F","Q74L","D84G","C85D","I102V","V109I"],"tat":["K29M","S70P","I76A","R78G"],"vif":["K33R","K36N","R90K","R93S","E117G","I124T","I128L","T157I","P188S"],"vpr":["Y15F","I60L","L68M","G94S"],"vpu":["T2I","E5A","I13V","V21I","F27L","L43I"]},"labels":{"aa":"INT: 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R269K, D278G; RT-p66: S123D; gp120: T35S, S37K, T57V, A253T, R280S, -318T, S366N, -368S, -370S, -371T, -372N, -374T; gp41: I264V, C326G, F340L; nef: I194L; p17: A15S, R30K, M31L, L34I, K76R, S126N; p24: V11I; p6: A39T; rev: H82S, I102V, S107P; tat: K19T, A21P, K53R; vif: M8V, D117E, Q127E, R130S; vpr: H45Y"}},"children":[{"name":"AY371121","node_attrs":{"div":0.14734999999999998,"accession":"AY371121","clade_membership":{"value":"G"},"country":{"value":"CM"},"date":{"value":2001.0},"Strain_name":{"value":"01CM_4049HAN"},"LANL_subtype":{"value":"G"}},"branch_attrs":{"mutations":{"nuc":["G398A","A423C","C456A","G481A","T503A","A513G","T514C","A519G","T525A","G527A","C558A","T570C","G579C","A585G","C586T","G607A","A664G","C665A","T668C","A694G","G695A","A705G","G717A","T718G","T731C","C773A","T777A","T782C","A839C","A878C","C879T","A880C","A881C","A938T","G968A","A978T","A988C","A1115T","G1192A","T1229C","G1256A","G1268A","C1292T","G1339A","A1361G","G1450C","T1451A","G1452A","G1455A","T1501C","T1559C","A1601G","A1619G","A1642G","T1646C","G1661A","G1691C","T1728G","A1771G","A1793G","G1794A","T1796C","G1839A","A1840G","A1867G","A1903C","G1997A","A2026G","T2080A","G2111A","C2149T","G2182A","A2194G","A2212T","G2317A","C2353T","A2395G","A2406G","A2422G","T2425C","A2461G","G2473A","G2518A","A2612G","G2629A","G2714A","A2726G","A2752G","A2881G","G2914A","C2930T","A2938G","C2941T","G3001A","G3015A","G3165A","A3196G","T3253C","A3370G","G3439A","A3497G","A3544T","T3566C","C3649T","A3655G","G3737A","G3770A","T3778C","G3808C","C3823T","G3836A","G3859A","T3976C","C4068G","G4096A","A4108G","T4117C","C4141T","A4162C","G4263C","T4291C","C4471T","T4477C","A4498C","A4531G","A4555G","A4564G","T4672A","T4674C","G4677A","G4689A","A4693G","G4695C","G4696A","C4697T","G4735A","G4737A","A4774T","A4775G","G4779A","A4817G","G4838A","C4844T","T4868C","C4883T","C4914T","C4976T","C4993A","T5018C","G5030A","A5049C","G5087T","A5099G","C5115T","A5167G","G5236A","G5257A","A5305G","A5312G","C5351T","C5432T","C5445T","A5448C","G5461A","T5462A","T5478C","G5482T","T5483A","A5535C","C5539A","A5544G","G5545A","C5551T","A5555C","G5556A","A5564C","G5565A","A5601G","A5602T","-5626G","G5673A","A5694G","A5727C","T5739G","A5781G","-5799T","G5812-","-5824A","A5896C","T5911A","G5915A","A5918C","C5921A","T5932C","T5948G","C6024T","G6086C","C6097T","T6154G","T6155C","-6172C","-6174C","-6177C","T6178C","-6179A","-6180C","T6181C","A6188G","C6189G","C6190T","A6192C","-6195T","-6196A","A6197G","-6198A","-6200A","-6201A","-6202T","-6203A","-6204G","-6205C","-6206A","-6207A","-6208T","-6209A","-6210A","-6211T","-6213T","-6214C","-6215A","-6216C","-6217G","A6219T","-6220G","A6234C","A6235C","C6238T","C6241T","T6244C","G6274A","A6276T","G6277A","A6279G","A6281C","A6283G","T6337A","G6345T","A6368T","G6391A","A6395G","C6403A","A6430G","G6457A","G6466T","C6482T","A6489G","G6575A","G6617A","A6653G","C6660T","A6695T","A6744G","G6774A","A6775G","A6776G","G6788A","A6789C","G6790A","-6808A","A6811C","A6813C","C6815T","T6816C","A6817T","G6819C","A6821T","A6824G","T6825A","C6826A","T6827-","-6832A","A6833T","C6849T","C6856G","A6877G","A6886C","T6895C","G6936A","-6948T","T6955A","A6956T","T6957C","T6958A","-6966G","-6983A","-6984C","-6985A","-6986A","-6987A","-6988T","-6989A","-6990G","-6991T","-6992A","-6993C","-6994T","-6995G","-6996A","-6997G","-7005A","-7006A","G7042A","C7084T","A7090C","G7100A","G7147A","A7152G","T7153G","A7154G","C7156T","A7161C","-7162C","A7163T","-7164C","-7165A","C7170T","T7192A","G7198A","G7212A","G7225T","C7250T","C7313A","G7315A","G7428A","A7519G","A7527T","T7618C","A7626T","G7633A","G7640A","C7678T","G7712A","A7713T","A7722G","C7747A","C7770A","A7771C","T7775C","A7782G","C7801A","T7843G","A7885G","A7891G","G7892A","G7957A","A7962G","G7977A","C7984A","G7995A","G7997A","T8008A","G8032A","G8050A","C8080A","T8091G","C8092T","T8115C","G8130A","T8157G","G8158T","T8159G","T8171C","T8174C","G8184A","T8203C","A8222C","C8242T","A8273G","T8279G","A8294C","G8308A","-8364A","-8367A","-8370A","-8372A","C8385A","G8388A","G8393A","G8415A","G8428A","T8431A","G8434C","T8440C","T8442-","C8443-","T8444-","C8445-","A8446-","A8447-","G8448-","A8449-","T8450-","T8451-","T8452-","A8453-","G8454-","C8455-","T8456-","A8457-","G8458-","G8459-","C8460-","A8461-","T8462-","G8463-","G8464-","A8465-","G8466-","C8467-","A8468-","A8469-","T8470-","C8471-","A8472-","C8473G","A8474G","C8477T","C8480G","A8481-","A8482-","T8483-","A8484-","C8485-","T8505A","C8534T","T8568C","G8570A","A8643G","A8688C","T8711C","A8718T","A8719G"],"INT":["E11D","A21T","A98G","G163A"],"RT-p51":["E6K","K39N","K104R","T173A","M178I","E207K","K211E","R307K","R357K"],"RT-p66":["E6K","K39N","K104R","T173A","M178I","E207K","K211E","R307K","R357K","T468A","Q483H","S491P","V548I","V559I"],"gp120":["D19E","D21N","T22P","P23T","S32A","E78Q","-106V","-107T","-108T","-109T","K123-","E124G","K127T","K141I","K142R","K143Q","N161R","R164M","T172S","N181D","D183E","P210S","K212R","E241K","V255I","S263T","N267D","T269I","S280T","I281F","D297G","T308A","R311K","E312T","T332I","N334K","G361E","N365I","-367I","-373S","-375E","-376N","-377E","-385T","-433T","N434R","T439I","D446E","S453N","K457N"],"gp41":["L4I","S42N","Y75F","Y108F","D113N","E137I","N140S","D148E","A156D","N160S","N166K","V197I","E220G","G225E","R231K","D23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E11D, A21T, A98G, G163A; RT-p51: E6K, K39N, K104R, T173A, M178I, E207K, K211E, R307K, R357K; RT-p66: E6K, K39N, K104R, T173A, M178I, E207K, K211E, R307K, R357K, T468A, Q483H, S491P, V548I, V559I; gp120: D19E, D21N, T22P, P23T, S32A, E78Q, -106V, -107T, -108T, -109T, K123-, E124G, K127T, K141I, K142R, K143Q, N161R, R164M, T172S, N181D, D183E, P210S, K212R, E241K, V255I, S263T, N267D, T269I, S280T, I281F, D297G, T308A, R311K, E312T, T332I, N334K, G361E, N365I, -367I, -373S, -375E, -376N, -377E, -385T, -433T, N434R, T439I, D446E, S453N, K457N; gp41: L4I, S42N, Y75F, Y108F, D113N, E137I, N140S, D148E, A156D, N160S, N166K, V197I, E220G, G225E, R231K, D232N, F263C, V271A, S277L, L285C, W286G, Y291H, R294Q, I307L, R324G, N331H; nef: Q15K, V16I, V25I, G29E, V30E, G31A, V33A, S34-, Q35-, D36-, L37-, A38-, R39-, H40-, G41-, A42-, I43-, T44-, N47-, T48-, C55S, I101V, N116H, N126C; p1: K4R; p17: K30Q, L41M, G49D, I60A, K62G, L64I, L75I, F79L, V82L, T84V, R91K, N110R, K120R, N124D, V128S; p2: G9A, A10T, A11T; p24: S16T, Q50S, I83L, Q86P, E128D, R154K, R203K; p6: R4S, F17V, K31R; p7: I12T; pro: R14K, E35D; rev: S7A, E10G, R14Q, R17Q, A37T, R50K, S54T, A62T, A68T, L78I, S82C, G99R, V104W, V108A, V109A; tat: T19I, K24N, V29K, V36Y, R53S, G57R, P59S, Q60P, K63T, G83D, K85E; vif: M29K, Y30H, V31I, A35T, K36R, G37H, R50K, V51I, K63M, V65I, H110Y, T155P, R167S, P177S; vpr: A4V, I70V; vpu: T24S, E40D, D44E, T61L, E62A, E63A, A65M, T66E, -68G, V69N, E70F, M71D, G72-, D73-, F74-, 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N125S, Q130E, E137V, S138A, N140T, K144Q, A151S, N160D, N166H, T208I, T210P, G220E, S239N, A267V, F304L, I309V, V322G; nef: G3A, S8V, V16I, I20L, P24R, P25Q, V33A, S46R, D64E, R71K, A83G, D98E, I101V, Q107R, F120Y, T133I, F135Y, D149E, V153I, N157T, K158I, Q170L, E201D; p1: N9H; p17: P23Q, M31L, R43K, D49G, T53S, A54T, Q63K, L68V, F79Y, R91K, K95R, S111G; p2: A7V, S8T; p24: Q86P, E98D, T119A, I124V, V148T, G183N; p6: T8S, I21T, *50S; p7: S4G, K41R; pro: D35E, K70R; rev: A15T, Y28P, A37T, G99R; tat: S61N, P73S, L74S, P81Q, G83D, P84Q, E85K; vif: M8V, R67T, K77R, N95H, S130R, T140N, T155P, P156Q, T157K, A159T, P187H; vpr: E25D, N48S, I63M, F72Y, P93S, G94S; vpu: Q2L, E5Q, A7F, V10A, V14L, D69N, N81I"}}},{"name":"FR846408","node_attrs":{"div":0.1588,"accession":"FR846408","clade_membership":{"value":"G"},"country":{"value":"PT"},"Strain_name":{"value":"PT3037"},"LANL_subtype":{"value":"G"}},"branch_attrs":{"mutations":{"nuc":["T200C","C217T","T250C","A263T","A268G","-304A","-305A","C362T","G378T","C456A","A461C","T479C","T485C","G520A","G534T","C540A","C558A","T572C","A584C","A605T","G614T","A643T","A672G","G699A","A704G","A759C","T760C","G761A","T789C","A869G","C950T","G954A","A980G","C988A","T1001C","A1024G","A1112G","A1115C","G1218A","C1292A","T1299C","G1301A","A1391C","G1442C","G1487A","C1535T","A1567G","C1610T","C1712A","-1775C","G1819A","G1839A","C1864T","C1913T","A1982G","G2074A","T2107C","T2116A","A2191G","A2221G","T2380C","G2389A","G2473A","A2498G","A2500C","G2539A","A2599G","A2612G","A2614C","T2653C","T2689C","A2714C","C2728A","C2740T","T2803C","A2838T","A2846G","G2998A","C3006A","C3133T","G3173A","G3229A","T3240A","G3243A","G3244T","A3247G","A3248G","G3378A","G3428A","G3440A","A3483G","A3508T","C3517T","T3541C","A3583C","A3643G","G3679A","G3737A","G3808T","G3816A","C3857T","T3967C","T3970C","T3977G","A4090T","C4258T","G4267A","G4388T","A4513G","G4549A","A4643G","T4691A","A4694G","C4757T","C4776A","G4786A","G4829A","G4859A","C4914T","G4923A","C4925T","A4951G","T4959A","A4988C","A4993C","A4997G","A5059G","C5062T","A5134G","T5203C","C5242T","A5336T","C5351T","G5363A","G5370A","T5439C","C5445T","A5547G","C5556T","T5568C","A5576C","A5613G","A5622C","T5626G","A5652G","C5685T","A5693T","A5694G","A5727C","A5729G","G5747A","C5833G","G5908A","T5911G","T5992C","A6022C","A6029G","G6088A","C6165A","T6166A","A6177G","T6178C","A6180C","C6183A","A6188G","G6189C","C6190A","A6192C","-6195C","A6197C","-6201C","-6205A","C6210T","-6215A","-6216A","-6217G","-6222C","A6225G","G6280A","A6286G","C6289T","G6329A","G6330A","A6336C","T6337A","G6339A","G6392A","A6464G","C6548T","G6583A","A6605G","G6628A","A6639C","A6644G","A6648G","G6669A","A6692C","G6693C","T6695A","C6758T","A6789G","T6792C","A6800G","T6808A","G6809A","C6810A","C6815T","A6818-","A6819-","A6820-","A6824C","T6825A","C6826A","T6829C","-6830T","-6831T","-6832T","A6836G","C6844A","C6857T","A6913G","-6953A","-6954G","-6955T","T6956C","T6958G","A6959G","A6960C","-6966A","T6967C","-6969A","-6971A","-6972G","-6974A","-6975A","-6976T","-6977G","-6978A","-6979A","G7004-","A7005-","C7008A","G7026A","C7077T","G7088A","C7089G","A7090G","A7094G","C7096A","T7107A","T7150A","A7158C","T7159A","G7160A","G7162T","A7163-","T7165-","T7170C","G7256A","G7269A","A7274C","G7295A","T7309G","G7340A","A7342C","G7495A","T7509C","A7532C","A7590C","T7609C","A7633T","C7658G","G7677A","A7690C","A7693G","A7701G","C7703T","A7722T","C7723T","A7782G","C7801T","C7805T","A7832G","T7968C","C7969A","G7977A","G7997A","T8171G","A8191G","G8194A","A8208G","G8222A","T8265C","G8267A","G8276T","T8290G","T8292G","A8297G","A8299G","G8303A","T8304G","T8321G","T8322C","A8323C","A8329G","G8330C","G8354A","G8385A","A8396T","G8407A","G8436C","G8458A","A8469G","G8490A","G8537A","G8590C","T8645A","C8676T","T8745C","C8771T","A8783C","G8787A","G8798A","G8818A","G8861A","G8868C","C8873T","A8875G","A8922C","C8945G","T8973C","A8998G","C9017T","A9034C","C9078T","T9146C","G9175T"],"INT":["R14K","L68V","A205S"],"RT-p51":["I173D","K207Q","S211R","D248V","S251G","A304E","A360T","I382K","W383Y","K385E","R428Q"],"RT-p66":["I173D","K207Q","S211R","D248V","S251G","A304E","A360T","I382K","W383Y","K385E","R428Q","A445T","E449K","K463R","E471D","V548I"],"gp120":["D19E","T23I","-105S","-106L","-107M","N108K","V109D","N113-","S115-","N160G","N161T","S162N","V180M","M243I","N251D","E262T","I264V","N265S","S280P","F281I","H302Y","N312S","M313T","N316D","-324Q","-326F","-327N","N328G","T330K","S337A","G361E","-367S","-368L","-369A","-371N","-372N","-375E","N378-","T385-","R391K","A408V","A412R","N414E","E432K","N433-","I439T","V468I","R472K","E481K"],"gp41":["G13S","V69A","N96T","E110D","D113N","Q119E","Q129H","N133S","N140I","N160S","I177V","I222T","G225E","D232N","K233R","L290V","N302S","V307I","V321A","V322I","V325F","F329L","L330R","I332V","V334R","L340A","A343L"],"nef":["E15K","E18D","R22Q","A32P","R39K","I43V","A50T","F135L","D149N","G159E","M173I","A176P","K178R","I194L"],"p17":["A15S","L41M","E42D","G62E","A67S","Q69K","L75I","Q90H","E93D","E103V","K113E","E122K"],"p2":["Q6H"],"p24":["M10P","E75K","I83M","E98G","E128D","D163N","D187E"],"p6":["E32D","S47N"],"p7":["K34R"],"pro":["R14K","P39S","I62V"],"rev":["E11G","T14I","I18T","I21L","R50K","V108G","K115E","E116K"],"tat":["N67T","S87Q"],"vif":["L64I","R67K","H110Y","D113N","K122R","L125I","E134D","Q136P","K158R","A159V","H183R"],"vpr":["Q77H","V89I"],"vpu":["E5D","A7V","Q29L","E40D","K41R","R47K","-72A","P76-"]},"labels":{"aa":"INT: R14K, L68V, A205S; RT-p51: I173D, K207Q, S211R, D248V, S251G, A304E, A360T, I382K, W383Y, K385E, R428Q; RT-p66: I173D, K207Q, S211R, D248V, S251G, A304E, A360T, I382K, W383Y, K385E, R428Q, A445T, E449K, K463R, E471D, V548I; gp120: D19E, T23I, -105S, -106L, -107M, N108K, V109D, N113-, S115-, N160G, N161T, S162N, V180M, M243I, N251D, E262T, I264V, N265S, S280P, F281I, H302Y, N312S, M313T, N316D, -324Q, -326F, -327N, N328G, T330K, S337A, G361E, -367S, -368L, -369A, -371N, -372N, -375E, N378-, T385-, R391K, A408V, A412R, N414E, E432K, N433-, I439T, V468I, R472K, E481K; gp41: G13S, V69A, N96T, E110D, D113N, Q119E, Q129H, N133S, N140I, N160S, I177V, I222T, G225E, D232N, K233R, L290V, N302S, V307I, V321A, V322I, V325F, F329L, L330R, I332V, V334R, L340A, A343L; nef: E15K, E18D, R22Q, A32P, R39K, I43V, A50T, F135L, D149N, G159E, M173I, A176P, K178R, I194L; p17: A15S, L41M, E42D, G62E, A67S, Q69K, L75I, Q90H, E93D, E103V, K113E, E122K; p2: Q6H; p24: M10P, E75K, I83M, E98G, E128D, D163N, D187E; p6: E32D, S47N; p7: K34R; pro: R14K, P39S, I62V; rev: E11G, T14I, I18T, I21L, R50K, V108G, K115E, E116K; tat: N67T, S87Q; vif: L64I, R67K, H110Y, D113N, K122R, L125I, E134D, Q136P, K158R, A159V, H183R; vpr: Q77H, V89I; vpu: E5D, A7V, Q29L, E40D, K41R, R47K, -72A, P76-"}}}]},{"name":"G_NODE_0000019","node_attrs":{"div":0.12697999999999998,"clade_membership":{"value":"G"}},"branch_attrs":{"mutations":{"nuc":["C160T","-304A","-305A","C587A","T1787C","A1867G","T2499C","A2613T","A3103G","A3524G","G3808C","C3826T","A3866G","A3961G","T4261C","A4717T","A4966G","A5159G","C5556G","C5678T","G5725C","T5787C","C5792A","C5795A","C5797-","T5798-","G5800T","A5804C","T5807C","G5808C","G5809C","G5810T","G5811T","-5813T","-5814G","-5815G","-5816A","-5817A","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","-5824G","A6159C","C6183G","C6198G","C6482T","T6618A","G6799A","-6955G","-7006C","A7155C","T7156A","-7164C","G7628A","C7651A","C7898A","C8123T","A8269G","A8323G","A8342C","A8876G","A8879G","G8943A"],"INT":["I31V"],"RT-p51":["V135T","Q334P"],"RT-p66":["V135T","Q334P","R461K","T477A"],"gp120":["N102T","-112N","-116S","I255N","-322K","-324I","S335P","G361K","-377S","-384D"],"gp41":["D109N","N125S","Q199K","G226D","F329I"],"nef":["S8C","A83S","E201N"],"rev":["P92L"],"vif":["Y44F","E127G"],"vpr":["T19A"],"vpu":["T24I","E40Q","E60D","L61T","A62E","A63E","V65A","E66T","M67L","G68-","D69V","F70E","D71M","-72G","-73D","-74F","-75D"]},"labels":{"aa":"INT: I31V; RT-p51: V135T, Q334P; RT-p66: V135T, Q334P, R461K, T477A; gp120: N102T, -112N, -116S, I255N, -322K, -324I, S335P, G361K, -377S, -384D; gp41: D109N, N125S, Q199K, G226D, F329I; nef: S8C, A83S, E201N; rev: P92L; vif: Y44F, E127G; vpr: T19A; vpu: T24I, E40Q, E60D, L61T, A62E, A63E, V65A, E66T, M67L, G68-, D69V, F70E, D71M, -72G, -73D, -74F, -75D"}},"children":[{"name":"AY612637","node_attrs":{"div":0.14611999999999997,"accession":"AY612637","clade_membership":{"value":"G"},"country":{"value":"PT"},"Strain_name":{"value":"PT2695"},"LANL_subtype":{"value":"G"}},"branch_attrs":{"mutations":{"nuc":["C179A","C217A","A286G","T302A","G463A","G519A","G527A","G654A","A675C","C950T","C988A","T1299C","A1359T","T1481C","T1598C","A1694C","-1775C","-1782T","G1794A","C1960T","T2104C","G2182A","A2233G","C2266T","G2389A","G2428A","A2611G","T2689C","G2727A","G2761A","T2803C","A2809G","A2842G","G2921A","G3010A","G3016A","T3096C","A3099G","T3121C","G3398A","C3399T","A3448G","G3477A","A3491G","A3523G","G3563A","T3566C","C3577T","G3626A","G3630A","G3816A","G3834A","A3868G","T3967C","A3988G","A4107G","T4123C","A4175G","A4420G","A4466C","A4644G","T4702C","G4726T","A4748C","T4835C","G4913A","A4956T","T5047C","C5221T","G5302A","C5303T","G5308A","T5356C","A5461G","T5562C","A5564C","C5585G","T5604G","C5614T","A5621G","C5627T","A5718C","A5793C","C5808T","G5839A","T5980C","C6026A","A6031G","T6151C","A6177T","A6186G","-6195G","A6200G","-6201T","C6202A","-6204C","-6205C","T6213G","A6214C","-6215A","-6216C","-6217T","A6219T","C6220G","-6222G","G6267A","A6273G","A6276G","C6298T","G6323A","T6334G","A6464G","C6483T","A6553G","T6556C","A6574G","A6604G","G6628A","T6634C","A6644G","A6647C","A6648C","A6655G","A6659G","C6673T","C6697T","G6732A","C6777T","G6779A","A6780G","A6785G","T6787A","T6795A","A6818G","G6821A","C6826A","-6830A","-6831A","-6832A","C6835G","A6839-","A6840-","G6841-","A6842-","C6844-","T6860C","C6862T","A6900T","A6912G","C6919T","A6936C","-6953A","-6954G","T6957C","-6966A","-6969G","-6971A","-6972G","-6974A","-6975A","-6976T","T7009C","C7089A","C7114T","G7147T","A7151G","A7152G","C7182T","G7259A","T7432C","A7572G","C7582T","G7631C","A7701C","A7711G","G7753A","A7772G","G7773A","A7800G","C7801A","G7957A","G7980A","G8001A","A8023G","C8047T","G8050A","G8079A","G8137T","A8184G","T8213A","T8256C","T8288A","G8330C","C8336T","A8364T","A8409G","C8415T","G8526A","A8528T","G8570A","G8589A","T8597G","T8636A","A8663G","C8723T","C8921T","C8945T","C9017T"],"INT":["R14K","R20K","K111R","N134D"],"RT-p51":["S211N","V276I","D335G","A435I"],"RT-p66":["S211N","V276I","D335G","A435I","I466V","G490R","S491P","D511N","R512K"],"gp120":["L58M","E59K","-111I","N113V","-114T","-117G","-118S","-119T","-120A","-121G","-122Y","-123R","G124E","R138K","K140R","K141R","D157N","N159G","N160R","P210L","I264V","N265P","T269A","N272S","S280R","A291T","T292D","G293A","D294I","T308I","E309R","N311E","I314K","K319A","K322E","E323K","-326K","-327K","K329I","I331-","T332-","S336P","S337A","N349I","E353G","K361A","-371S","-372L","-375S","N378S","-379N","A412E","K418M","T436E","N437T","A443V","A469T"],"gp41":["K90R","E110Q","N133T","S157D","N166R","R259H","Q294R","F304I","V318A","A343L"],"nef":["T23A","P25S","E62N","F85L","D98E"],"p17":["R43K","G62R","A107T","K114Q"],"p24":["T210S"],"p6":["E32D","A39T"],"rev":["V16A","Q24E","A37T","I59V","A68T","V97L"],"tat":["K63T","P70R","G83D"],"vif":["T20A","F39S","R47M","E54D","I124L","V154A"],"vpr":["I84T"],"vpu":["P3S","E5G","A7F","K37N","E62D","V78I"]},"labels":{"aa":"INT: R14K, R20K, K111R, N134D; RT-p51: S211N, V276I, D335G, A435I; RT-p66: S211N, V276I, D335G, A435I, I466V, G490R, S491P, D511N, R512K; gp120: L58M, E59K, -111I, N113V, -114T, -117G, -118S, -119T, -120A, -121G, -122Y, -123R, G124E, R138K, K140R, K141R, D157N, N159G, N160R, P210L, I264V, N265P, T269A, N272S, S280R, A291T, T292D, G293A, D294I, T308I, E309R, N311E, I314K, K319A, K322E, E323K, -326K, -327K, K329I, I331-, T332-, S336P, S337A, N349I, E353G, K361A, -371S, -372L, -375S, N378S, -379N, A412E, K418M, T436E, N437T, A443V, A469T; gp41: K90R, E110Q, N133T, S157D, N166R, R259H, Q294R, F304I, V318A, A343L; nef: T23A, P25S, E62N, F85L, D98E; p17: R43K, G62R, A107T, K114Q; p24: T210S; p6: E32D, A39T; rev: V16A, Q24E, A37T, I59V, A68T, V97L; tat: K63T, P70R, G83D; vif: T20A, F39S, R47M, E54D, I124L, V154A; vpr: I84T; vpu: P3S, E5G, A7F, K37N, E62D, 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L74I, I101L, A124Q, N134S, S206T, I267V, I268L; RT-p51: E122K, G196E, E207G, S251I, K281R, A286T, D335E, R357K, T377V; RT-p66: E122K, S123D, G196E, E207G, S251I, K281R, A286T, D335E, R357K, T377V, I467V, H480Q, Q509I, K527N, S554N; gp120: S1N, T22A, A32S, K37R, V40I, T57I, E59K, N71P, N102K, -105D, -106Y, -109G, -111V, -112T, -113N, -114K, -115T, -116T, -117V, -119N, -120A, -121R, -122E, K127T, I133V, K141R, K142R, K143T, K150R, D157N, N158E, N159D, N160T, N161S, S162D, S181N, L198I, N206T, P210T, K212R, K224R, R245S, Q259R, L260F, E265K, N267K, T269I, I281F, K309E, N311E, E312G, Q315K, -318K, -319E, -322S, E323N, -324I, -326H, -327N, N328-, R351A, G361L, S365R, S366T, -367G, -368E, K391N, R401K, A412E, N432K, T436S, N437S, T439I, R472K, E479G; gp41: T101A, D109S, Q147H, D153N, K154N, N160S, S165T, N166K, K172R, I175V, L204V, T208I, L209P, E215D, E220R, R221G, G225E, D232G, R233K, I235V, F263L, I264L, L265S, A267V, A268V, V271L, S277L, W286K, N287S, V290E, I309V, V321I, V322A, A325T, 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L102I, Q105H, D117E, K122Q, R130S, E134D, T170A, *193W; vpr: P85L, S96P; vpu: I6V, Y30A, K41S, 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I31V, K42R, S57G, I101L, V112M, N124G, T125A, N134D, T136K, Q137H, D207E; RT-p51: E122K, E207D, S251D, P272A, P294T, V329I, L334P, K356R, S359A, S379G, P435L; RT-p66: E122K, E207D, S251D, P272A, P294T, V329I, L334P, K356R, S359A, S379G, P435L, V458I, I466V, H480Q, Q524E, S554N; gp120: A2T, S3A, N5K, D19E, S57N, E74D, -111N, -125E, -126I, K127L, C129Y, I133M, I137V, P155Q, L156M, S161D, V170I, R201N, T210N, I249F, D251S, E262D, N267T, T269I, T308A, K309N, N311T, E312R, M313I, K316V, K329E, N330K, N334D, S336P, N349T, S365M, -367L, -370T, -379N, -380E, -381T, -382T, -383S, -385N, E436G, -437T, T439I, I468V, K472P, R474K; gp41: F8L, L9F, V72L, K77Q, I84L, D113N, S125N, S133N, E137I, D153G, K154E, W169R, K172Q, I222T, R231K, I235V, G290E, Q294R, A322V, R324G, C326G; nef: E15T, I20M, E28A, E63D, M79I, G83A, Q105K, D108E, N116H, C142P; p1: K4R; p17: G49D, T53S, G54A, K62I, Q65K, T81A, T84V, V104I, K110S, E114K, A115N, Q116S, K117Q, G123E, S125N; p2: G9S, A11S, A12T; p24: S14A, L83V, I91V, 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L340A, R342K, L345N; nef: S8N, E15R, Q50A, Q62E, G83E, Y120I, N126C, A151T, S163C, D205N, C206*; p1: N9H; p17: K18R, M31I, V35I, T53S, Q58K, K62Q, L68I, V82L, T84V, R91K, I107M, K110N, S121G, K122Q, N124-, S125-, S126-; p2: A10S; p24: L91I, P92A, T110N; p6: L1P, N3S, P5L, E19-, E20-, P25-, P30L, T35I; p7: K7R, R11K, R41K; pro: D37E, I82V; rev: V16I, S61T, S67P, H82T, D84N, D88A, S89T, R90G, P92S, T94S, G99R, V104G, S106H; tat: D2E, P6S, R57G, S62N; vif: H48D, L64I, D78E, H110Y, S116A, D117E, I128V, N140K, K151T, T157K, R160K, R167K, G182D, *193W; vpr: P10S, P37V, I61L, S93A, S96F; vpu: Q2H, S3A, I6V, A7S, A18T, K32R, 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R20K, I31V, N124T, N255S; RT-p51: W88C, A98S, K104R, D121H, S123D, I135K, I142V, S163T, I178L, E207Q, P272S, K390R, P435L; RT-p66: W88C, A98S, K104R, D121H, S123D, I135K, I142V, S163T, I178L, E207Q, P272S, K390R, P435L, Q470P, Q483L, V531I; gp120: T22A, D105N, -109L, S130T, I137L, K141S, L147I, K150R, L151S, P155Q, D157G, N158D, -160S, -161T, S162K, V170I, S181T, R201N, K203E, T208K, T246S, I249F, D251N, I255T, I257L, E262K, T263S, N272G, R280S, F289L, D294A, G296I, D297-, I298-, R299-, Q300-, A301-, H302-, C303-, N304-, V305-, S306-, K307-, T308-, K309-, W310-, T313-, L314-, Q315-, K316-, V317-, L321-, F325-, -326G, N328I, K329T, S337T, I343V, T344V, S347M, R351G, N358D, G361E, -365D, S366T, -367R, N369-, -378N, -379S, -381N, -382T, -383S, L425I, N432E, N433E, T436E, N437T, T439I, R472K; gp41: V2I, L4M, I24L, K77R, D113G, Q119E, S125N, Q129K, N160T, K172R, E223G, G225E, D230G, R231K, S256I, F263L, I264V, G281S, Q294R, I307T, I309V, V321L, N331H, L340A; nef: S9K, I10R, V11A, G12Q, P14S, E18A, R19K, I20M, A26T, G31E, R39K, G83A, Y135F, P150I, E152D, C169S, I173L, D177N, R178G, R184K, R196K, L198Q; p1: K4R, I5F, G11E; p17: A15K, M31L, E42D, A54G, Q58R, M61L, K62T, R91G, K95R, K110N, E114G, K117A, T120M, S125N; p2: A7V, A11S, I13M; p24: L91F, T116A, T210S, V230I; p6: L1I, S14N, P25S, P30Q, E32D; p7: K3R, S4-, P9T, R11G, N12K, E21D, E51Q, R52G; pro: L10I, D37N; rev: S56G, E57Q, Q74H, H82S, G99E, I102V; tat: K24N, V29K, T58A, P59S, G61S, K71E; vif: H27Y, I31R, G37N, L59V, D61E, K63M, R67K, K77R, Q91L, R92K, S116T, I128V, P131H, A152V, I159A, R160K, G182D, R184K, N186-, P187-, T188-, M189-, S190N, *193W; vpr: D7N, P14-, Y15-, N16-, E17-, P37I, I84L, P85L, R86Q, V89G, D91N; vpu: Q2T, E5V, I28V, R38K, D40E, K41Q, L43I, A50T, T66K, M71F, V72E, D73Q, 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P76H"}}},{"name":"KT276261","node_attrs":{"div":0.17796999999999996,"accession":"KT276261","clade_membership":{"value":"G"},"country":{"value":"ES"},"date":{"value":2014.0},"Strain_name":{"value":"ARP1201"},"LANL_subtype":{"value":"G"}},"branch_attrs":{"mutations":{"nuc":["A161T","T165G","T201C","-217T","A263G","-280G","A371G","A419G","G424A","A426T","A437G","G461T","A516T","A519C","G524A","G554A","T560C","A563G","A566T","G608A","C636G","G641T","G642A","A651C","A654T","A665C","G675A","A678G","A684G","-693A","-694C","-695A","G696A","A706G","C722T","T734C","A776G","A779G","A791G","A809C","A818G","G821A","C824T","A836G","A860G","T974C","C978A","A980G","T983C","C988A","A989G","G992A","T1058C","C1060A","A1077G","G1090A","C1103T","A1133C","G1247A","C1292G","G1313A","A1355G","A1388G","C1403T","A1404G","G1419A","A1476G","A1486G","G1495A","A1586T","A1670G","T1676C","C1680G","C1693T","G1720T","A1733G","C1768A","-1782T","T1790C","C1825A","C1831T","A1832G","A1841G","A1851G","A1933G","T2080C","C2149A","A2164G","C2211A","A2212T","C2326T","C2335T","C2452T","C2464T","T2467C","C2485T","T2488C","G2518A","A2524G","A2545C","A2560G","A2616G","A2627T","G2632A","G2675A","A2698G","A2755G","A2821G","A2869G","A2872G","A2925G","A2929G","A2974G","A2989G","A3043G","C3067A","G3080A","A3230G","G3293C","C3322T","T3349C","T3355C","A3370G","T3376C","A3386C","A3451G","A3477G","A3491G","T3541C","A3565G","G3569A","A3607G","A3622G","C3665A","C3668T","G3679A","C3688T","C3691T","A3703G","T3721A","A3727T","T3742C","T3746C","G3816A","G3825A","A3835G","A3866G","G3919A","C3940T","T3943C","A4030G","A4178G","A4186G","T4192C","G4306A","G4366A","G4372A","A4397C","A4410C","A4414C","A4543C","A4546T","A4555G","A4564G","T4585C","G4636A","A4644G","A4693G","G4735A","A4816G","G4848A","A4860G","G4870A","G4896A","G4935A","A4968T","C5018T","A5021G","A5049C","A5051G","C5052T","T5062C","G5123A","A5140G","G5159A","A5187G","T5203C","C5213A","C5214T","C5221A","A5224G","A5284C","T5292G","A5293C","A5296G","A5312G","-5320T","A5335G","T5357C","G5385A","A5448G","C5451T","T5483C","C5491T","C5502G","G5557A","A5563C","A5594G","G5599A","A5611C","A5621T","C5627T","G5629T","A5644G","A5652T","C5664A","G5715A","T5731A","C5763T","A5781G","-5799T","-5811G","G5902A","T5911A","A5950C","A5957C","C5989A","C6004T","A6023G","C6024A","G6028A","A6030T","A6037G","T6163C","A6167G","-6170T","A6176-","A6177-","T6178-","A6182-","A6188G","C6189G","C6190G","T6196C","G6203C","-6205C","-6207G","A6208C","-6211G","A6212C","A6214G","-6215A","-6217G","-6218G","-6219A","-6220A","-6221G","-6222A","-6223A","-6224C","-6225C","-6226A","-6227A","-6229A","-6230T","C6238T","T6242A","G6267A","A6268C","A6275C","G6280A","A6286G","T6287C","C6318A","A6330G","-6332G","-6337T","G6391A","C6396G","A6406T","G6436A","A6461G","A6483T","A6488C","G6532A","G6533A","A6544G","C6551T","T6563G","G6566A","G6572A","A6578G","G6588A","A6594C","A6602T","T6618A","G6628A","G6631A","A6635G","G6638A","A6641G","G6647A","A6649C","A6654C","C6670T","A6684G","A6685G","A6694G","T6745C","C6758T","T6760C","A6764T","A6765G","T6766G","G6771A","-6774A","-6785C","A6786T","G6790C","A6796G","C6797G","-6806C","G6821C","G6823A","T6827C","-6830A","-6831A","-6832C","T6835C","-6841A","A6905G","-6949G","-6950A","-6951G","-6952C","-6953A","-6955A","-6956T","-6957C","-6962A","-6963T","-6964C","-6968A","-6970A","-6984C","-6985A","-6988C","-6989A","C7014T","G7060A","T7096C","G7107T","A7108G","T7127A","G7145A","G7146T","A7147T","A7151G","A7155G","T7156C","-7158C","-7161G","-7162A","-7163G","-7164G","-7165T","G7182C","G7198A","C7201T","G7225A","C7250T","G7303A","A7339G","C7429T","A7459C","T7555C","C7605G","T7630G","A7666T","C7678T","A7693C","C7702A","A7713C","G7765A","C7770A","A7771C","T7775C","C7921T","A7931C","G7970A","A7992G","A7998G","G8019A","C8048T","C8051A","C8092T","A8093G","G8117C","T8164C","T8171G","A8191G","T8197G","T8203A","A8208G","G8212A","C8213G","A8222T","A8233T","T8279G","T8290C","C8293T","C8320G","T8321G","T8322C","T8337A","G8365A","G8373T","G8385A","G8388A","A8396G","A8402G","G8458A","C8471G","C8480T","C8490G","T8505G","G8506T","A8531T","G8537T","C8543G","G8561A","T8567C","G8570A","T8582C","G8588A","T8591A","T8600C","A8604G","A8643G","C8655A","C8666G","A8678C","C8684T","G8730A","G8731A","G8732A","A8739G","C8740T","T8746A","G8786A","G8808A","C8809A","G8818A","T8832C","A8879G","G8945C","T9019G","C9068T"],"INT":["R14K","S17N","I31V","I135V","I208L","E212A","E256D"],"RT-p51":["T39N","K174R","I178L","E194K","E207D","K277R","D324E","V329I","S379G","V400L","T431P"],"RT-p66":["T39N","K174R","I178L","E194K","E207D","K277R","D324E","V329I","S379G","V400L","T431P","K461R","I466V","E492K"],"gp120":["D19E","T35P","-57D","E59V","V106S","K107-","N108-","-111N","-112G","-113N","-114S","-115T","-116S","-122E","-123E","-124P","-125K","-126L","S130T","R138N","K141Q","Y145H","P155Q","N159S","-160D","R201K","K203E","Q210I","K212Q","V227I","L237V","A238T","E240K","I242V","R245K","E247A","T250S","I255N","N261D","E262K","T263A","E265N","N267T","K277R","V288A","T292K","H302Y","N304W","S306N","-311L","-312N","T313M","Q315E","-318Q","-322K","-324Q","F325V","-326L","-327N","T330N","R351G","-367I","-368S","-370I","-379N","-381T","-382N","T387I","R418M","L425I","G431I","N433S","N434T","-435G","-436G","G443A"],"gp41":["V2A","Q52H","T101S","D109E","E121D","Q130H","S133T","E137A","A156D","T210P","E223K","D230G","D232G","S239N","I264V","E272Q","N298K","N302S","L304V","I307L","C326G","L340A","L345Q"],"nef":["S8N","E15K","V16I","I20M","R39K","Q50E","C55V","E63D","S88G","I101V","Q105K","D108E","G130K","I133V","A156N","G159E","E201D"],"p17":["R30K","E42D","M61L","K62R","L101V","E102D","E103K","K106Q","I107L","K110N","E114K","T115A","K117E","N124S"],"p24":["L83M","T110N","T116A","S120N","D187E","S225G","V230I"],"p6":["L1V","P5L","S14I","P24S","P30Q","T35S","P49Q","S51L"],"p7":["S4G","K7R","R10K"],"pro":["L10I","T12A","I15V","Q18R"],"rev":["Y28S","R41Q","S67L","A68E","H82C","R90T","G99R","S106P","K115E","*117E"],"tat":["V36A","G61S","K63Q","L74F"],"vif":["R17K","T20A","K36R","R50K","K77R","E88K","R92G","S95N","D104N","E117K","I128L","T155P","P156S","I159T","E185G"],"vpr":["D7N","A19T","N28S","P37I","I63S","I70V","Q77R","G94S"],"vpu":["E5V","A7F","A8S","I13V","L42I"]},"labels":{"aa":"INT: R14K, S17N, I31V, I135V, I208L, E212A, E256D; RT-p51: T39N, K174R, I178L, E194K, E207D, K277R, D324E, V329I, S379G, V400L, T431P; RT-p66: T39N, K174R, I178L, E194K, E207D, K277R, D324E, V329I, S379G, V400L, T431P, K461R, I466V, E492K; gp120: D19E, T35P, -57D, E59V, V106S, K107-, N108-, -111N, -112G, -113N, -114S, -115T, -116S, -122E, -123E, -124P, -125K, -126L, S130T, R138N, K141Q, Y145H, P155Q, N159S, -160D, R201K, K203E, Q210I, K212Q, V227I, L237V, A238T, E240K, I242V, R245K, E247A, T250S, I255N, N261D, E262K, T263A, E265N, N267T, K277R, V288A, T292K, H302Y, N304W, S306N, -311L, -312N, T313M, Q315E, -318Q, -322K, -324Q, F325V, -326L, -327N, T330N, R351G, -367I, -368S, -370I, -379N, -381T, -382N, T387I, R418M, L425I, G431I, N433S, N434T, -435G, -436G, G443A; gp41: V2A, Q52H, T101S, D109E, E121D, Q130H, S133T, E137A, A156D, T210P, E223K, D230G, D232G, S239N, I264V, E272Q, N298K, N302S, L304V, I307L, C326G, L340A, L345Q; nef: S8N, E15K, V16I, I20M, R39K, Q50E, C55V, E63D, S88G, I101V, Q105K, D108E, G130K, I133V, A156N, G159E, E201D; p17: R30K, E42D, M61L, K62R, L101V, E102D, E103K, K106Q, I107L, K110N, E114K, T115A, K117E, N124S; p24: L83M, T110N, T116A, S120N, D187E, S225G, V230I; p6: L1V, P5L, S14I, P24S, P30Q, T35S, P49Q, S51L; p7: S4G, K7R, R10K; pro: L10I, T12A, I15V, Q18R; rev: Y28S, R41Q, S67L, A68E, H82C, R90T, G99R, S106P, K115E, *117E; tat: V36A, G61S, K63Q, L74F; vif: R17K, T20A, K36R, R50K, K77R, E88K, R92G, S95N, D104N, E117K, I128L, T155P, P156S, I159T, E185G; vpr: D7N, A19T, N28S, P37I, I63S, I70V, Q77R, G94S; vpu: E5V, A7F, A8S, I13V, 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V14A"}}},{"name":"CRF116_0108_NODE_0000001","node_attrs":{"div":0.11486999999999999,"clade_membership":{"value":"CRF116_0108"}},"branch_attrs":{"mutations":{"nuc":["G463A","G519A","A540C","A618C","A663G","C1061T","A1359T","C1491T","C1680A","A1861G","T2062C","A2170C","A2202C","T2440C","G2459A","T2631A","G2830T","A3124G","T3492G","G3631A","A4000G","G4464A","C4826A","A4900G","G5087A","A5302G","G5531T","A5711G","A6167T","A6168C","T6184A","A6185G","C6189A","A6275C","A6338G","A6394G","A6430G","C6692A","A6785T","A6810G","A6891T","T7059C","A7297G","A7542C","T7801A","A7880G","G8036T","A8076G","A8739G","G8864T","A8967C","C8990T"],"INT":["S230N"],"RT-p51":["E36A","E122K","V179D","E245H"],"RT-p66":["E36A","E122K","V179D","E245H","L452I","I466C"],"gp120":["K141Q","K150R","S162E","I180M","H280T","N311Y","Q316K","H346L"],"gp41":["M54L","K80T","N166K","I193V","V245F","H258R"],"nef":["E174D"],"p17":["R43K","E62K","K69Q","K110E"],"p24":["T210S"],"p6":["L1I"],"rev":["C63F"],"vif":["H80Q","Q105R"],"vpu":["K35R","K44E"]},"labels":{"aa":"INT: 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K66R"}}},{"name":"MT624748","node_attrs":{"div":0.12785,"accession":"MT624748","clade_membership":{"value":"CRF116_0108"},"country":{"value":"CN"},"date":{"value":2014.0},"Strain_name":{"value":"14YN264"},"LANL_subtype":{"value":"CRF116_0108"}},"branch_attrs":{"mutations":{"nuc":["A613C","G651A","A908T","T988C","T992G","A1101G","A1142G","G1151A","T1262C","G1354C","A1476G","T1482C","G1715A","G1720A","A1804G","A2113C","A2127G","A2925G","T2935C","C3128A","G3151A","A3264G","G3280A","C3307A","A3448G","C3466T","T3544C","A3622G","C3665G","G3684A","G3697A","T3904C","G3952A","T4117C","T4198C","A4239C","A4498G","A4677G","A4689G","A4695C","A4760G","G4769A","C4820T","G4869A","A4913G","G4966A","A4994C","A5124G","C5147T","A5154C","A5223T","G5236A","G5312A","T5354C","G5385A","G5418A","A5453T","A5499G","A5545G","A5611T","A5622G","A5623C","G5700A","G5729A","A6113G","C6187T","A6194T","A6195C","G6197A","A6198C","C6201A","T6202C","-6204T","C6205A","A6206G","T6210A","A6211T","G6212C","G6213T","A6225G","G6234A","G6277A","A6317C","A6333G","G6375A","C6563T","A6581G","A6638G","A6806G","C6824A","-6833C","-6834C","-6835T","A6839G","A6849G","A6850C","T6876C","A6937T","G6951A","A6960G","-6985A","G6986A","A6988T","A6989G","C6990A","C6991A","T6993C","G6994C","G6995A","G6997A","T6998G","T7000G","A7001T","A7002G","A7005G","C7019A","C7020T","A7152T","-7162G","A7269G","C7631G","A7655G","T7708C","A8032T","G8055A","T8113A","G8239A","A8271G","A8294C","A8337T","T8366G","A8400T","A8458G","A8469G","G8738A","T8746A","C8809A","G8823A","T8829A","T8831C","A8844G","G8914A","A8922G","-8972C","-8974G","T9012A"],"INT":["N155T"],"RT-p51":["E6D","K11R","K277R","P345T","K390R","D404E"],"RT-p66":["E6D","K11R","K277R","P345T","K390R","D404E","Q524E","R530K"],"gp120":["S87G","N105D","-106S","N107T","-109I","T110G","-112L","N113T","D124G","R127K","K155Q","N160S","R174K","I243V","K262E","T318A","K319G","H324N","-326P","N328E","K329-","K332S","L341P","K361N","S366-","C367-","N369-","-378N","-379N","-380C","E381T","C382R","D384E","P389I","K414I","-433I","S435N","T436K","K472R"],"gp41":["Q110E","I118V","S251N","R277L","Q323R","N331H","Q345L"],"nef":["S8R","I20L","G29A","K39R","I43V","F135Y","A156D","D161N","C163S","I168V","R191H","I194V"],"p17":["E93A","E106K"],"p24":["V86A","H87Q","I124V","G208A"],"p6":["S14N","K42R"],"p7":["S4G","F6L"],"rev":["T62S","C89S"],"tat":["Y26F","R57G"],"vif":["I31V","T35A","K37Q","G95S","R127Q","I180V","N190H"],"vpr":["D7G","H15Y","E17A","H40L","V70I","G94S"],"vpu":["T2S","I6L","R41K"]},"labels":{"aa":"INT: 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K42R; p7: R10G, S50T; pro: K41R, I72V; rev: T8N, I18V, Y28P, S31A, H82S, V108G, I109V, T114A; tat: Q17R, H54Q, D64S, L74P, P75S, I77S, P84Q; vif: Q47R, E61K, I63T, D78G, R105Q, T155A, Q178H, E185D; vpr: E6Q, E13Q, H40L, N48S; vpu: E29Q, Y30L, Q36E, I43V, D73E"}}}]},{"name":"CRF69_01B_NODE_0000002","node_attrs":{"div":0.11526,"clade_membership":{"value":"CRF69_01B"}},"branch_attrs":{"mutations":{"nuc":["T3497C","C4754T","-6222A","-6225A","-6226T","-6229A","-6230G","C6692A","G6806A","-6955C","-6999G","-7000T","-7002A","-7005G","G7964A"],"RT-p66":["S468P"],"gp120":["-123K","-124D","N158D","A318T","I332N"],"gp41":["G221R","R324G"],"p17":["A107V"]},"labels":{"aa":"RT-p66: S468P; gp120: -123K, -124D, N158D, A318T, I332N; gp41: G221R, R324G; p17: 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L82V"}},"children":[{"name":"MW018130","node_attrs":{"div":0.18243,"accession":"MW018130","clade_membership":{"value":"other"},"country":{"value":"CN"},"date":{"value":2018.0},"Strain_name":{"value":"18110456"},"LANL_subtype":{"value":"CRF112_01B"}},"branch_attrs":{"mutations":{"nuc":["-179T","-180A","-217T","A278G","G279A","-280G","T396C","A398T","T485G","A497T","A518G","A576G","T636C","A644G","G716C","A725C","C771G","A797C","T824C","T917C","A944G","G977A","A980G","C983T","A989G","T1003A","C1005G","A1017C","G1022A","A1049C","A1070G","G1078C","G1090A","G1127A","G1139A","G1192A","C1235T","G1271A","A1278C","G1313A","T1322C","T1451A","-1452A","-1455A","-1456A","G1493C","A1495G","A1497G","G1498T","T1628G","A1642G","A1657G","G1661A","T1676C","A1701T","G1718A","A1719G","G1727A","-1730G","A1745C","C1749T","C1767A","-1776C","-1781T","-1783A","-1784T","-1785C","-1786C","T1854A","A1855G","A1857G","A1969G","C1985A","C1986T","T1987G","A1993G","A2008G","G2042A","T2095C","T2104C","G2155A","C2199T","G2210A","A2230G","A2273G","G2293A","C2335T","A2341G","C2353T","T2356C","A2380G","A2398G","G2401A","A2404G","G2422A","T2443C","G2462A","A2463G","C2467T","G2470A","T2499C","T2521C","C2540T","A2560G","A2579G","G2580C","C2605T","T2632C","G2660A","A2665C","C2684G","T2689C","C2694T","G2710A","A2715G","A2716T","G2722A","G2728C","T2735C","T2737G","C2740A","A2743C","A2755G","T2776C","G2828A","G2830A","A2839G","A2887G","C2909G","A2918C","C2930T","A3001G","A3073T","C3129A","T3132A","A3167G","A3200G","A3204C","T3253C","A3279G","A3302T","C3319T","C3322A","T3359C","C3415T","G3438A","C3449A","T3450C","A3451G","G3508T","A3562C","T3566C","A3583G","C3589T","C3610T","G3631C","A3671G","A3685G","G3694A","G3766A","G3770A","C3773T","A3808C","G3825C","C3826T","A3845G","G3846A","T3850A","T3856C","A3866G","A3868G","C3922A","A3923T","G3952A","T3962C","C3991T","C4006T","A4057G","G4063A","A4076C","C4079T","A4084G","A4107G","G4109A","T4110C","A4112G","T4129C","G4145A","A4159C","T4177G","G4178A","C4181A","A4183G","G4264A","G4268A","A4279G","A4376G","A4384G","T4412C","A4420G","A4427T","C4471T","A4475C","A4495G","A4498C","C4534T","A4555G","G4622A","G4631A","G4642A","A4644G","G4677T","T4678G","C4679T","A4697T","T4702C","G4708A","T4715C","C4724T","A4726T","A4727T","G4737A","A4766G","G4769C","A4778G","A4785G","A4786T","G4799A","A4805T","T4820C","G4855A","C4857A","G4859A","A4860G","G4861A","A4862G","G4887A","C4889A","T4912A","T4919C","G4949A","A4952G","T4967C","A4968T","G4981T","G4982T","A5024G","G5036A","A5037G","T5043C","A5051G","A5059G","T5062A","A5069G","C5073T","A5086C","G5087A","A5093G","A5122G","G5128A","A5143G","C5146A","A5150G","A5151C","A5200G","T5209C","C5213G","C5214T","C5215G","C5221T","G5236A","C5239T","C5248A","T5251C","G5272A","T5275G","T5281C","T5294C","A5305G","C5306A","G5312A","T5314C","T5327G","G5330A","T5333C","A5345G","T5354C","T5356C","G5357T","C5359G","G5361C","G5362A","A5366G","G5371C","C5372A","G5375A","G5382A","T5391C","A5396G","C5432A","A5433G","G5444C","A5446T","A5447C","T5451C","C5454T","A5463G","G5471A","G5472T","A5480C","C5482G","A5484T","C5491A","G5493A","A5494T","A5495C","A5537G","A5581G","G5599C","G5620C","C5641T","G5643A","A5644G","T5660C","A5670T","G5686C","C5687T","A5706T","G5717A","A5718G","A5742G","T5793C","A5848G","T5870C","T5899A","G5915A","C5944T","A5955T","C5984T","C5989T","C6004T","T6024C","C6026A","C6052T","C6097T","T6142C","C6145A","C6148T","A6159G","T6160A","A6167G","-6172G","A6179C","T6181C","A6185G","T6187G","C6189A","A6192C","T6193A","G6195C","A6197T","-6198T","-6202C","G6207A","-6210C","-6211A","A6212G","T6213G","-6217G","A6219T","-6222A","-6225A","-6226A","-6229T","-6230G","T6241C","T6250C","G6260T","A6266T","A6303G","C6317T","A6326G","T6328G","A6329T","A6330C","A6333G","A6335G","A6338G","-6340G","G6376A","T6395A","T6421C","C6496T","C6548T","C6559A","C6563T","T6598C","C6599A","C6632T","T6634G","G6644A","G6693C","-6697G","A6703-","C6713A","A6734G","T6735A","A6736C","G6743A","A6754G","A6757C","G6773A","G6774A","A6780T","A6797G","A6798G","A6818C","C6826T","T6853C","A6856G","A6859G","C6861A","A6868G","T6943C","-6956G","-6957A","-6958A","-6959A","-6960A","-6961T","-6968G","-6969G","-6970G","-6971A","-6972T","-6973C","-6974A","-6975T","-6976G","-6977A","-6978A","-6979G","-6980G","-6981G","-6982G","-6983G","-6984G","-6985T","-6986A","-6987A","-6988T","-6989G","-6991C","-6993C","-6994T","-6995A","T7000C","-7002A","-7005C","C7008T","T7009A","C7012A","A7013-","T7014-","A7015-","G7054A","A7063G","T7081C","A7094G","A7095T","A7152C","A7155G","T7156C","A7157G","A7160C","A7161C","-7164G","A7193C","A7225G","G7269A","G7276A","A7313C","A7373T","A7399T","G7534A","A7570C","C7597T","A7646C","T7675C","C7691A","A7703T","A7705G","A7721G","G7750A","T7757C","G7759T","T7774C","A7800G","A7818G","A7847G","T7865G","C7874T","G7915A","C7926T","A7931T","T7932C","A7977G","G8001A","A8002G","A8023G","G8036A","C8092A","A8093C","C8106T","G8130A","C8131A","C8149G","T8196C","T8206C","G8219A","G8231A","C8232T","C8268T","A8273G","T8279G","A8284G","T828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E11D, S17T, S24D, D25E, I31V, M50L, K111R, I113V, A124T, V165I, I201V, I203M, T218S, I234L, G283S, D286N; RT-p51: T35V, I60V, D123S, I135T, S162A, V189I, Q197E, T200I, Q207G, R211S, F214L, E245K, K275Q, E312N, P345Q, F346Y, R358G, T369A, E370A, K395R, T403S; RT-p66: T35V, I60V, D123S, I135T, S162A, V189I, Q197E, T200I, Q207G, R211S, F214L, E245K, K275Q, E312N, P345Q, F346Y, R358G, T369A, E370A, K395R, T403S, R448K, L452T, E471D, S491P, K512S, I526V, V559I; gp120: D21N, E34V, H44Y, L58M, N102R, -105D, -106V, -107N, -109K, N113-, -124G, R138S, K150R, P155S, N158E, N159S, N160S, S161G, S181T, L249I, V264I, H280P, I281M, Q287K, D297N, G307K, K309I, K315G, K322Q, K332R, P336H, K361N, -368E, -369N, -382G, -383I, -384M, N414V, -433T, N434S, N435D, T436P, N437S, I447L, R472K; gp41: I4L, I24L, Q32H, M115L, Q130K, I134L, N140D, N166S, K172R, I182V, F188V, L191F, T208I, T210S, E225G, R233K, A245I, F263L, I264L, A268V, A306T, T307V, A310I, A322V, R324G, W326G; nef: I10V, T23A, C55M, R59E, K82R, G83A, F85L, F89H, E98D, G99R, E108D, Q125D, D149E, P150V, R151-, E152-, V153-, S169N, E174D, E176P, A188S, R191F, K192H, I194K, K204T, D205N; p1: K4R, N9S; p17: I61M, T81A, E93D, K127N, Q130H; p24: P14A, I91N, P92A, M96L, G116A, S120N, R154K, N183H; p6: T8S, S14D, T23S, Q26-, P30K, K33Q, -36P; p7: Q9H, K10R, R11V; pro: L19Q, K20R, P63M, V82I; rev: S7N, T8A, Y28F, I52V, I59V, C63Y, H82T, Q95K, Q101E; tat: N7S, N12K, T19K, S23T, N24S, W32Y, Q35P, L36V, L39I, K40S, H54R, I69V, P73S, S75P; vif: R19K, T20A, V31C, F39S, R41K, R47I, V51I, E61D, R67V, Q73H, R90K, Q91K, R92E, D101K, L109Q, I128L, R130S, R132I, T151A, K158R, I159K, K167T, K179R, R181K, N186S, P187H, M189L; vpr: N16A, P37V, N48E, E55A, L68M, V70I, I74M, I84T, P85R, G86Q, G89A, A93T, S96P; vpu: E5Q, I13V, L18S, A27L, R37K, 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P76H"}}},{"name":"MK397789","node_attrs":{"div":0.25556999999999996,"accession":"MK397789","clade_membership":{"value":"other"},"country":{"value":"CN"},"date":{"value":2017.0},"Strain_name":{"value":"17ZJ075"},"LANL_subtype":{"value":"CRF117_0107"}},"branch_attrs":{"mutations":{"nuc":["A168-","A169-","A170-","T172-","C173-","G181-","T182-","T200G","T201C","A224G","A278G","-280G","A286G","A302T","-305A","G365C","A418G","C419T","T424G","G463A","A497G","T571A","T572C","C618A","G619T","C635T","T668C","A678G","A701-","G702-","G703-","A704-","-711A","-712A","-713G","-714A","A852T","A1010G","A1029-","G1089A","A1092-","C1187-","G1298A","G1313A","A1340G","T1451G","G1458A","G1469A","A1475T","C1514T","A1580G","T1652C","T1676C","A1743G","G1760A","A1770G","C1826A","T1828G","A2006C","T2035A","C2202A","T2212G","A2230G","G2329A","A2374G","T2383C","T2456C","C2467T","T2494C","C2533T","G2602A","A2629G","A2665G","T2737C","T2779G","C2806T","A2836G","T3045C","G3085A","C3133T","A3148G","A3268G","A3280G","G3292A","C3358T","C3399T","T3492C","C3500T","T3505G","A3562C","T3602C","C3618T","T3628C","T3668C","C3688T","T3754C","A3874G","T3970C","A4027G","C4042T","T4075C","T4444C","C4445T","T4476G","A4546C","G4687A","T4701G","G4737A","T4761G","G4855T","G4861A","C4878T","T4911A","C4937A","T5006C","T5028C","A5059G","T5062C","T5072C","T5081C","A5134G","G5137A","G5257A","C5268A","A5269G","T5314G","T5457C","T5492C","G5546C","T5568C","A5581C","G5599T","T5600-","A5601-","C5613T","T5616C","G5619A","G5692C","A5694G","T5695G","A5696C","A5699G","A5701G","A5720G","G5734A","C5756A","A5757G","C5763T","A5781G","-5799G","G5851T","G5856A","A5947G","G5956T","T5964C","G5972A","T6023C","C6026A","A6044T","T6076G","A6103G","A6119C","A6158C","T6166C","-6180T","T6181A","A6188G","C6189T","C6191T","A6192C","-6198T","-6199A","-6201C","-6203G","-6204G","-6205A","-6208T","T6210C","-6211T","-6213T","-6218G","A6219G","A6230G","T6242A","G6267A","T6271C","G6274A","T6287C","T6289G","G6290T","T6301C","A6303G","G6304A","T6307A","A6311C","A6333G","G6339A","T6340G","G6346A","A6394G","C6416T","A6438T","A6443C","C6496T","C6618T","C6619T","C6631T","G6638A","A6689G","A6695T","-6697T","A6703-","A6725C","G6726A","A6752G","A6753C","A6764G","A6786G","T6787G","A6788G","A6806G","A6825G","C6833A","C6849T","A6854C","G6906A","T6925C","T6928C","A6931T","A6947T","T6949C","-6956C","T6957A","-6961T","-6962G","-6963G","-6964A","-6965A","-6966C","-6967C","A6990T","C6993A","-6995G","-6996G","-6997G","C7006A","C7012T","C7016A","G7026A","G7027A","A7030C","G7055A","G7058A","T7059C","G7072A","G7089A","G7132A","-7147T","-7148G","-7149T","A7155G","A7158C","T7159A","A7161T","C7164A","A7165T","T7180G","G7190A","G7195A","T7204C","A7275G","G7276A","G7289C","G7441A","A7463C","A7471G","C7474A","C7561A","A7630G","A7689G","A7691C","C7692A","C7706A","G7712C","A7721G","A7753G","G7769A","G7773A","G7790A","C7825T","C7843T","T7879C","G7885A","C7959T","A8032G","C8037T","C8044G","T8112G","G8159-","T8164G","C8165T","A8196G","T8321C","T8332G","G8373A","A8385G","A8386C","A8400T","G8402A","A8446G","T8462C","A8469G","G8520A","G8528A","G8561A","A8576C","G8590C","T8636A","T8740C","G8795T","C8903G","C8913A","G8914A","A8922T","C8930T","C9068T","T9097C","A9099G","T9160A"],"INT":["R224W","I234S"],"RT-p51":["A36E","D39E","Y121H","I178M","V317A","A435V"],"RT-p66":["A36E","D39E","Y121H","I178M","V317A","A435V","V466A"],"gp120":["S1N","E34D","V37A","V40I","F57L","L58M","N64Y","K89Q","N102H","-105Q","-107N","-111D","I126V","S130T","E136V","R138K","Y145Q","A146S","K150R","I153L","N157G","N161S","V180M","H188Y","Y195F","I197L","T255I","E262K","I279-","I281-","G284-","P285-","G286-","Q287-","F289-","Y290V","R291T","T292F","D294P","K300A","N311R","K312E","T318A","Q324R","-328N","T332I","K334Q","R351K","-365Y","-368Q","-369S","-370G","-371T","-372I","-373N","-376G","-377D","-378N","-379G","-380T","L388I","R391K","G401R","V402T","M406I","S412K","N414K","N432V","N434S","-435T","-436V","D446N","M447I","K474R","E479Q"],"gp41":["M54L","N129S","T130Q","D133E","L135I","E137Q","N140D","K144R","A156T","S157N","D163N","P219L","A245V","D247E","V270G","G286-"],"nef":["V11I","M20L","Q35R","I43V","A60T","G83A","I133T","R151S","S187R","R191N","R194W"],"p17":["H28R","M30R","R43K","F79Y","R95I","T115A","-122K","-123K"],"p2":["-7T","T8N","N9R","S10-","-12T"],"p24":["T41S","R100-"],"p6":["I21T","T22A","I31V","L50W"],"p7":["M1I","R3S"],"pro":["L10M","K70Q"],"rev":["E11Q","I18T","T62A","R66G","S67P","S88R"],"tat":["I39T","R57T","I69L","P84S"],"vif":["R34K","K36N","F39V","V51I","L59V","R90I","R92K","L109M","D117E","K158R","I159T","H183R","R184K"],"vpr":["A55E"],"vpu":["E29Q","Y30A","K31R","K32E","K38R","V43I","A50E","V82L"]},"labels":{"aa":"INT: R224W, I234S; RT-p51: A36E, D39E, Y121H, I178M, V317A, A435V; RT-p66: A36E, D39E, Y121H, I178M, V317A, A435V, V466A; gp120: S1N, E34D, V37A, V40I, F57L, L58M, N64Y, K89Q, N102H, -105Q, -107N, -111D, I126V, S130T, E136V, R138K, Y145Q, A146S, K150R, I153L, N157G, N161S, V180M, H188Y, Y195F, I197L, T255I, E262K, I279-, I281-, G284-, P285-, G286-, Q287-, F289-, Y290V, R291T, T292F, D294P, K300A, N311R, K312E, T318A, Q324R, -328N, T332I, K334Q, R351K, -365Y, -368Q, -369S, -370G, -371T, -372I, -373N, -376G, -377D, -378N, -379G, -380T, L388I, R391K, G401R, V402T, M406I, S412K, N414K, N432V, N434S, -435T, -436V, D446N, M447I, K474R, E479Q; gp41: M54L, N129S, T130Q, D133E, L135I, E137Q, N140D, K144R, A156T, S157N, D163N, P219L, A245V, D247E, V270G, G286-; nef: V11I, M20L, Q35R, I43V, A60T, G83A, I133T, R151S, S187R, R191N, R194W; p17: H28R, M30R, R43K, F79Y, R95I, T115A, -122K, -123K; p2: -7T, T8N, N9R, S10-, -12T; p24: T41S, R100-; p6: I21T, T22A, I31V, L50W; p7: M1I, R3S; pro: L10M, K70Q; rev: E11Q, I18T, T62A, R66G, S67P, S88R; tat: I39T, R57T, I69L, P84S; vif: R34K, K36N, F39V, V51I, L59V, R90I, R92K, L109M, D117E, K158R, I159T, H183R, R184K; vpr: A55E; vpu: E29Q, Y30A, K31R, K32E, K38R, V43I, A50E, 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I21V, R38Q, R50N, A62S, R80G, P100S, T114A; tat: Y26F, K40T, N67S, P68L, P70S, P81T; vif: E45D, K63R, I87V, R93K, K160R, N176K; vpr: G41S, I46V, E48D, T49N, A55T, F72Y, Q77H, I84V; vpu: T2L, P3D, I6S, S7A, A8L, I9A, A19V, F27Y, I33L, L34V, D62E, A65S, K66T, E70D, F74L, D75R, P76L, W77L, 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pro: K41R, I62V, L63S, I64V, M89L; rev: A15T, I21L, T34S, A47E, Q51H, E57D, C63Y, D88G, I102V, A108P; tat: K19G, A21P, N23T, K24A, W32F, L39I, G42A, S61D, K63E, P68S, D80E; vif: K77Q, H80Q, R93G, R130I, P131H, K158R, T188I, N190H; vpr: E17A, F72Y, S96P; vpu: T2S, E5D, V21I, T24S, R47A"}},"children":[{"name":"KJ485697","node_attrs":{"div":0.17234000000000002,"accession":"KJ485697","clade_membership":{"value":"other"},"country":{"value":"MY"},"date":{"value":2011.0},"Strain_name":{"value":"11MYKL055"},"LANL_subtype":{"value":"CRF51_01B"}},"branch_attrs":{"mutations":{"nuc":["A425G","A435T","A437G","T571A","G712A","A715C","C719T","G818A","G1090A","C1175T","A1340G","A1343C","G1346A","A1359T","T1363C","T1484C","G1498A","A1587C","G1589A","G1736A","A1832G","G1845A","A2075C","T2077C","A2368G","G2422A","C2589T","C2671T","T2689C","C2714G","A2734G","A2755G","A2829T","A2925G","C2942A","G3044A","C3346T","T3359C","A3435G","C3499T","C3542T","G3643T","A3748G","A4076C","G4148A","A4243T","G4607A","G4727A","T4776A","G4855A","A4951G","A4966G","T4975C","C4993A","A5005G","C5047T","C5050A","A5051G","G5131A","G5137A","A5142C","A5159G","G5170A","G5179A","C5221A","C5248A","C5306A","A5385G","A5411G","T5439C","T5484C","A5548G","T5614-","C5615-","T5616-","A5619G","G5620T","G5629A","G5644A","C5651T","C5659A","A5702G","A5711G","A5784G","T5788C","T5789A","C5792A","C5795A","C5797T","G5802A","A5804T","G5808T","-5812G","-5813T","-5814G","-5815G","-5816A","-5817G","-5818A","-5819G","-5820G","-5821G","-5822G","-5823G","G5839A","-5861A","C5878A","T5956C","A6044G","A6076G","T6166C","A6168C","-6170G","C6172T","C6189T","A6197C","-6201A","T6250G","A6263T","A6324G","A6326G","G6458A","G6466T","A6471C","A6489C","C6673A","C6684T","A6689T","G6790T","A6820T","A6823G","-6833A","-6834A","-6835T","T6838G","A6840C","-6956C","-6957T","-6958T","-6959A","-6961A","-6964C","-6967T","A7002G","A7005G","T7008A","A7033G","A7037G","A7044G","G7092A","A7123G","C7201T","A7275G","A7303G","A7313C","A7315G","C7322T","G7440A","G7441A","G7517T","A7589T","A7590C","G7628A","A7629C","T7631C","G7657A","C7691A","T7692C","A7747T","A7755G","A7763C","C7801T","C7906T","C7969A","A7998G","C8033A","C8080A","A8163G","T8176C","G8181T","A8184G","G8255A","G8276A","C8294A","G8304A","T8310A","A8312G","A8314C","T8321C"],"INT":["A125T","K156N","D278N"],"RT-p51":["T165I","Q207E","E245V","K277R","L283I","A317T"],"RT-p66":["T165I","Q207E","R211K","E245V","K277R","L283I","A317T","N447S","H483Y","E516D"],"gp120":["-3T","P57R","N64D","-106L","-109T","N111Q","N115T","-118S","-119H","-120D","N121S","-122G","T123I","-124G","N132K","I137L","T158R","S161T","D202N","K204N","N206T","K212T","N273K","T277I","T279S","E312D","R322S","N328K","K329T","-368L","-369K","-382G","-383S","-384G","T385N","I395V","N397S","G413E","K474R"],"gp41":["I4L","R46K","V72L","N96S","D109T","M118I","L130T","E151G","K154Q","D232G","S236P","L244I","N287S","S293I","Q294R","V325I","H331N","R334K","I336K","R337G"],"p17":["S126N","Q127P"],"p24":["S120N","T210S","L211P"],"p7":["R11K","K41Q"],"pro":["T12A","G16E","I93L"],"rev":["L21F","T62N","L78I","E111D"],"tat":["N12R","T58A","S87*"],"vif":["L64I","R90K","K122R","Q127R","I130T","N140S","T154I","T155K","K181R","G182D","R184K","N186H"],"vpr":["E13A","T19A","L68M","S94G"],"vpu":["S2L","S3Y","L4I","D5I","I6T","V7-","A8-","V13I","A15V","L18I","K32R","K35R","L61Q","V65A","E66V","-69V","-70E","-71R","-72G","D78N"]},"labels":{"aa":"INT: A125T, K156N, D278N; RT-p51: T165I, Q207E, E245V, K277R, L283I, A317T; RT-p66: T165I, Q207E, R211K, E245V, K277R, L283I, A317T, N447S, H483Y, E516D; gp120: -3T, P57R, N64D, -106L, -109T, N111Q, N115T, -118S, -119H, -120D, N121S, -122G, T123I, -124G, N132K, I137L, T158R, S161T, D202N, K204N, N206T, K212T, N273K, T277I, T279S, E312D, R322S, N328K, K329T, -368L, -369K, -382G, -383S, -384G, T385N, I395V, N397S, G413E, K474R; gp41: I4L, R46K, V72L, N96S, D109T, M118I, L130T, E151G, K154Q, D232G, S236P, L244I, N287S, S293I, Q294R, V325I, H331N, R334K, I336K, R337G; p17: S126N, Q127P; p24: S120N, T210S, L211P; p7: R11K, K41Q; pro: T12A, G16E, I93L; rev: L21F, T62N, L78I, E111D; tat: N12R, T58A, S87*; vif: L64I, R90K, K122R, Q127R, I130T, N140S, T154I, T155K, K181R, G182D, R184K, N186H; vpr: E13A, T19A, L68M, S94G; vpu: S2L, S3Y, L4I, D5I, I6T, V7-, A8-, V13I, A15V, L18I, K32R, K35R, L61Q, V65A, E66V, -69V, -70E, -71R, -72G, D78N"}}},{"name":"JN029801","node_attrs":{"div":0.17174,"accession":"JN029801","clade_membership":{"value":"other"},"country":{"value":"SG"},"date":{"value":2011.0},"Strain_name":{"value":"11SG_HM021"},"LANL_subtype":{"value":"CRF51_01B"}},"branch_attrs":{"mutations":{"nuc":["A416G","C426T","T635C","A797C","A857C","T1003C","C1060A","G1184A","C1229T","G1388A","C1406T","G1543A","T1796C","A1907G","A1993T","A2023G","A2059G","T2071C","T2087C","G2134A","C2281T","C2584T","G2686A","A2698G","A2727G","T2803C","A2980G","A3071G","C3376T","A3387G","A3535G","C3653A","C3688T","T3865G","C3994T","C4078A","A4107C","T4152C","A4225G","G4268A","T4291C","A4385G","G4464A","C4754T","G4767A","G4769A","A4774G","G4864A","A4865C","G4870A","C4925A","C4978A","A4994C","G4995T","G5040A","A5065G","T5072C","G5128A","A5233G","T5292C","G5412T","A5462G","T5467A","T5483C","C5552A","T5576C","-5611T","-5612C","-5613C","A5626G","A5643G","A5704T","G5717A","A5718G","T5787A","G5799T","C5801T","C5806A","T5807G","-5809G","-5810G","-5811G","C5831T","T5836G","G5842A","T5860-","C5862-","A5946G","A6020T","G6024C","A6065T","T6072C","T6169A","-6170T","A6173G","A6191T","-6201T","A6230G","T6287C","A6325G","A6327G","A6425G","G6463A","A6535G","A6706G","A6723T","C6752A","G6809A","A6810G","A6841G","A6855G","C6864T","A6884G","C6885T","A6936G","C6951A","-6961C","-6964G","A6966G","-6967A","-6968T","-6969G","-6970A","-6971A","-6972A","-6973A","-6974T","-6975G","-6976T","-6977G","-6978A","-6979C","-6980G","-6981G","-6982G","-6983G","-6984C","-6985A","-6994T","-6995G","-6996G","-6997G","G7055A","T7059C","T7144G","A7148G","A7158G","G7168T","G7195A","G7212A","G7235A","C7289G","G7291A","T7308C","T7325A","G7339A","A7366G","A7396G","A7456G","T7466C","G7534A","A7604G","G7633T","T7642G","G7668A","G7735A","G7773A","G7790A","A7796T","C8009T","A8011G","C8020T","A8076G","T8215C","A8228G","A8306C","G8945T"],"INT":["L101I","K111T","V126A","V165I","I204V","S230N"],"RT-p51":["K211R","I326V","K431R"],"RT-p66":["I326V","K431R","Q520K"],"gp120":["K31R","I56L","N71Y","V73A","-106A","N107K","Q108F","-109E","N113Y","I116V","N117S","-118G","-119I","-120G","-122I","-124D","I126V","Y145H","D157G","K159Q","N160T","S162E","T191A","Y290F","Q300K","E319R","N327-","Q334R","S337L","T344V","K361R","T366N","-384D","T385I","G401R","V402A","N432D","N435S","E438D","M447I","S453N","V461I","Q479E"],"gp41":["V2A","F8I","T101A","Q110Y","D113E","R122K","D148E","S157N","D163N","T165S","H258R","I309V","I318V"],"nef":["E201D"],"p17":["L34I","Y79F"],"p24":["I91T","T110N"],"p7":["R26K"],"pro":["N37D","E65D"],"rev":["L13I","A54V","I55V","R58W"],"tat":["K29R","C31S","V36A","P59H","V67A"],"vif":["E61K","K63R","G93D","S95N","D113E","Q136P","A137S","A152T","K160R"],"vpr":["E48D","I63T"],"vpu":["I33L","R37K","D60E","E62A","E63A","L67R","-68G","A75V","W77G","V79I"]},"labels":{"aa":"INT: L101I, K111T, V126A, V165I, I204V, S230N; RT-p51: K211R, I326V, K431R; RT-p66: I326V, K431R, Q520K; gp120: K31R, I56L, N71Y, V73A, -106A, N107K, Q108F, -109E, N113Y, I116V, N117S, -118G, -119I, -120G, -122I, -124D, I126V, Y145H, D157G, K159Q, N160T, S162E, T191A, Y290F, Q300K, E319R, N327-, Q334R, S337L, T344V, K361R, T366N, -384D, T385I, G401R, V402A, N432D, N435S, E438D, M447I, S453N, V461I, Q479E; gp41: V2A, F8I, T101A, Q110Y, D113E, R122K, D148E, S157N, D163N, T165S, H258R, I309V, I318V; nef: E201D; p17: L34I, Y79F; p24: I91T, T110N; p7: R26K; pro: N37D, E65D; rev: L13I, A54V, I55V, R58W; tat: K29R, C31S, V36A, P59H, V67A; vif: E61K, K63R, G93D, S95N, D113E, Q136P, A137S, A152T, K160R; vpr: E48D, I63T; vpu: I33L, R37K, D60E, E62A, E63A, L67R, -68G, A75V, W77G, 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E11D, R20K, L28I, V37I, S39C, I84L, A125V, G163E, I234V, G283S; RT-p51: A39S, I135T, T200I, E207Q, K211R, F214L, P272A, A355G, S379G, K385R, T386I, T403I, E432D; RT-p66: A39S, I135T, T200I, E207Q, K211R, F214L, P272A, A355G, S379G, K385R, T386I, T403I, E432D, L517I, S554T; gp120: L57V, E59V, N105D, -106K, -107L, -109S, N111E, -112E, N113I, -123K, -124N, I133V, T135L, E136G, R138K, D139S, K141M, K142Q, K150R, L151S, D159K; gp41: I24V, R46K, S107T, L108Y, D109Q, D113G, R122K, T128S, G129Q, L130E, N133R, E137D, E151A, I182V, L210H, Q229R, G235R, S256I, V267A, S293R, I318V, R334T; nef: I10L, R22K, E28V, A32P, V33A, Q35R, I43L, S45T, A50T, N51K, D54A, F85L, V114I, D149E, P150Q, E155K, N157T, N162T, P176T, M182V, R188K, R196H; p1: H9C; p17: K12E, R30K, L61M, S67A, S126N; p2: N9G, -10T, -13L; p24: I27V, S44A, M96I, T110N, N183G; p6: S3N, P23-, S24P, P25S, Q26L, E29G, Y36C, A39T; p7: R11K, R26K; pro: G17E, L19I, D35E, I36M, K41R, L63S, I93L; rev: E11T, L21R, A47E, H53Q, I55F, S61N, Q74H, I102V, S112T; tat: V4I, K12E, N23T, K24N, K40R, R57N, K63E, S75T; vif: R47T, V51I, D62G, K63R, V65I, D101N, K122N, A123T, I128R, K141Q; vpr: A59V, Q77R, T84N, R85I, Q86R, S94N; vpu: I18V, D44K, R47S, E58D, L74H, 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K7Q, T124A, A125T, I135V, V165I, A205S, T206S, T218I, D256E; RT-p51: D123E, I135V, S162C, E169D, K173A, Q174K, Q245V, K277R, T286A, E291D, E297T, V317A, S322A, T386P, Q394L, E399D, K431T, V435A; RT-p66: D123E, I135V, S162C, E169D, K173A, Q174K, Q245V, K277R, T286A, E291D, E297T, V317A, S322A, T386P, Q394L, E399D, K431T, V435A, A446S, L452K, K527N, S554A; gp120: S1N, E59Q, N64D, E78T, -107N, -109N, -112S, -114S, -115S, -116S, -118E, -119K, I126M, E136N, K141V, K142T, V154I, N158S, F182W, E240G, E241D, I243V, E247Q, L249I, T250S, Q259H, E262Q, I281M, Q287K, I305L, G307R, K309Q, A318V, T344V, K361Q, -368T, -369N, -371T, M398L, N414L, N432Q, -433N, R448K, I468V, R476Q, Q479G, E481Q; gp41: Q32L, L81R, S88T, T94P, N96S, S101T, E110Q, I124V, Q147K, E148D, N160S, F188C, L191I, Q199K, E220G, R233T, R236C, C253F, A268T, I301V, A306T, A310V, E313Q, V321A, T325I, H331N; nef: I10M, V11G, E24P, A26T, G29R, K39R, H40R, N51T, A53P, L58V, Y81S, K82R, G83A, F85R, Y102H, D151Q, E174D, R178K, Y203F; p17: E17K, S54A, G62E, Q69K, Y79F, K91H, D121A; p2: N9H, -10A; p24: I124V; p6: I21R, P25Q; p7: R3K, I12N; pro: K20R, I72T; rev: G6R, P31S, Q51H, H53R, S54L, I55L, I59L, S61D, S86D, A108P; tat: K7R, K19R, R52Q, K63Q, T64I, K85E; vif: R19N, N22K, H27Y, Y30H, V31I, G37R, Y39R, Y44F, G60E, D61T, K63T, I66V, K67T, R92G, K122Q, H127R, I128L, S130N, E134N, T155K, K176E, Q178R; vpr: Q3R, E48N, F72Y; vpu: V5Q, L7A, A11G, M67R"}},"children":[{"name":"GU595149","node_attrs":{"div":0.23809,"accession":"GU595149","clade_membership":{"value":"other"},"country":{"value":"IT"},"date":{"value":2001.0},"Strain_name":{"value":"53143"},"LANL_subtype":{"value":"CRF75_BF1"}},"branch_attrs":{"mutations":{"nuc":["G257C","G259C","A265C","G270A","G272A","G275C","G277A","G282C","G285C","T288C","G298C","-304A","-305A","G367A","G379A","A417C","C483G","A488G","A562C","C626G","C641G","C713T","A735G","C875T","C897T","A1046G","A1089G","G1090A","A1124G","C1171T","T1172G","G1173A","T1174C","C1175T","T1181C","A1196G","G1199A","G1206A","T1212C","T1234C","C1235T","T1237A","A1259G","A1271G","G1272T","G1404A","G1443A","A1670G","A1709G","C1754G","A1768C","G1848A","G1912A","A2293G","A2311G","A2386T","C2671T","A2722T","A2755G","C2797T","G2821C","G2887A","A2914G","G2969A","A2980G","A3070G","A3100G","A3409G","A3478G","G3523A","G3544A","T3567C","T3613C","G3631A","A3744G","G3796A","A3805G","A3808C","G3836T","G3869A","A4016G","C4162T","A4222G","T4355A","A4356C","C4471A","G4549A","T4679C","G4727A","A4735G","A4737G","G4774C","G4887A","A5059G","T5062C","G5075A","A5093C","T5102C","A5187G","C5280T","A5463C","C5548G","T5562C","A5623G","C5651T","C5763T","A5907G","A6009G","A6050G","A6179G","A6186C","C6189A","A6198G","-6200A","-6201G","-6202C","-6203G","-6204G","-6205G","-6206G","-6207A","-6208A","-6209A","-6210A","-6211G","A6222C","A6235G","C6238T","A6304G","A6329G","A6335T","A6402G","T6436G","A6463T","A6464G","A6475G","A6535T","A6693C","A6723T","G6725A","G6743A","T6793C","A6797G","G6803A","A6811G","C6826A","-6835A","-6836G","-6838T","T6932G","-6958G","-6977G","-6978A","-6979A","-6980C","-6981A","-6982G","-6983A","-6984C","-6985A","-6986A","-6987A","-6988T","-6989A","-6990G","-6992A","-6993C","-6994T","-6995A","-6996T","-6997A","-6998G","-6999G","-7000A","-7002A","G7026A","G7065A","T7087C","A7101G","A7154G","A7158C","C7164A","G7519A","A7549G","C7630A","G7640A","C7658G","A7714G","G7753A","A7782C","C7801T","A7818G","C7843T","A8006G","A8184T","A8236G","G8280T","A8305G","A8323G","G8388A","A8409T","G8454A","A8469G","C8565T","A8584C","A8587G","C8607T","G8654A","T8740C","A8801G","C8869T","A8870G","A8886G","G8888A","A8954G","C8989T","C9003T"],"INT":["E11D","S17N","A21S","V32I","S81G","Y194T","D232E"],"RT-p51":["V292I"],"RT-p66":["V292I","L491S","K550R"],"gp120":["K18R","N52S","N66D","-106V","N109D","-117G","-121M","-122E","-123A","-124G","E183G","T204E","H280P","Y290F","A291T","D294S","D297N","T308A","N312K","K315E","V317I","H324Q","-326K","N327D","S360A","S370G","-372E","S373Q","-378N","-379S","-380T","-381I","-382G","-383N","R391K","K416R","N435D","T437K"],"gp41":["D109E","D113N","S160T","K172R","Q294L","G326V"],"nef":["V16I","Q35P","E38K","I43V","P75S","H89Y","R105K","I133T","P176L","M182V","H192Q"],"p17":["G11E","R15K","K28Q","L50V","K76T","D102E"],"p2":["A7T"],"p24":["I2V","S120D","P147L","V148T","E159K","F161L","F168S","F169Y","V181L","G225S"],"p6":["Q30P"],"pro":["L10F","G17E"],"rev":["V16A","L18F"],"tat":["R29S","P58A","P77L"],"vif":["K50R","D101N","K158R","I159T"],"vpr":["N28S","A59V"],"vpu":["I6V","A15V"]},"labels":{"aa":"INT: E11D, S17N, A21S, V32I, S81G, Y194T, D232E; RT-p51: V292I; RT-p66: V292I, L491S, K550R; gp120: K18R, N52S, N66D, -106V, N109D, -117G, -121M, -122E, -123A, -124G, E183G, T204E, H280P, Y290F, A291T, D294S, D297N, T308A, N312K, K315E, V317I, H324Q, -326K, N327D, S360A, S370G, -372E, S373Q, -378N, -379S, -380T, -381I, -382G, -383N, R391K, K416R, N435D, T437K; gp41: D109E, D113N, S160T, K172R, Q294L, G326V; nef: V16I, Q35P, E38K, I43V, P75S, H89Y, R105K, I133T, P176L, M182V, H192Q; p17: G11E, R15K, K28Q, L50V, K76T, D102E; p2: A7T; p24: I2V, S120D, P147L, V148T, E159K, F161L, F168S, F169Y, V181L, G225S; p6: Q30P; pro: L10F, G17E; rev: V16A, L18F; tat: R29S, P58A, P77L; vif: K50R, D101N, K158R, I159T; vpr: N28S, A59V; vpu: I6V, A15V"}}},{"name":"MK341078","node_attrs":{"div":0.25315,"accession":"MK341078","clade_membership":{"value":"other"},"country":{"value":"ES"},"date":{"value":2017.0},"Strain_name":{"value":"P4837"},"LANL_subtype":{"value":"CRF75_BF1"}},"branch_attrs":{"mutations":{"nuc":["G278A","A302T","A303-","T426C","A435T","G481C","A485G","A500G","T516C","G524A","T534G","A566G","A581T","C583T","A645G","G656A","A672C","G709A","T718C","T978G","C1013T","C1061T","C1091T","A1115C","T1182C","G1184A","C1220T","A1242G","C1243T","G1256A","G1277A","G1328A","G1354C","A1367G","T1457A","C1481T","G1495A","T1547C","A1565G","A1673G","C1721T","C1746T","C1782A","C1787T","T1790C","T1826G","C1828A","G1845A","G1917A","C1985G","T2087C","G2422A","T2443C","C2452T","A2557G","A2629G","A2693G","A2715C","C2749T","G2926A","T2935C","C2942A","C2968T","C2975A","C3002T","G3059A","A3218G","A3264G","C3266T","T3368C","A3370G","A3391G","G3442T","A3484G","C3492T","T3493G","T3497C","C3499T","T3505G","G3529A","T3541C","G3595A","C3649T","A3684G","A3787G","A3816G","A3825C","G3834A","A3868G","A3973C","G3989A","A4012G","A4066T","C4123T","G4177A","G4183A","C4471T","A4555G","G4573A","G4673A","C4674A","G4703A","C4757T","C4761T","T4940A","T4968C","C5052A","G5060A","A5061G","C5125T","G5143A","C5213A","T5357C","G5363A","T5391C","A5447C","G5448A","A5461C","G5462A","G5538A","G5557A","T5567G","C5581G","T5614C","A5622T","C5654G","G5673A","A5718G","G5783A","A5790G","C5792A","A5793T","T5857A","C5862A","A5866C","A5869G","C5878A","T5899G","C5917T","T5956C","A6025C","T6026A","A6030C","G6079A","A6158C","G6170A","T6171A","A6172G","G6175T","A6180C","A6182G","A6186G","T6187G","A6188G","C6190T","A6192G","T6193C","G6217A","G6218A","G6224C","G6225A","A6226G","A6261G","A6303T","C6305A","T6306G","T6310C","G6311A","T6315C","C6317A","C6318A","A6326G","A6333G","C6336G","T6337C","A6403T","T6438A","G6458A","A6465C","G6466C","C6477T","G6532A","A6538C","G6611A","G6634A","G6647A","A6648C","A6691C","A6713G","A6714C","T6724C","A6734G","T6735A","C6752A","A6765C","G6776A","A6790C","T6794C","G6809A","-6830G","-6831G","-6832G","-6835T","A6837-","C6919T","A6931T","C6957T","-6958C","G6962A","C6966T","-6968T","-6969G","-6970G","-6971A","-6972G","-6973C","-6974A","-6975A","-6976T","C6991-","A7001-","T7003-","C7014T","C7018T","A7032G","T7095C","A7096T","G7132A","A7148C","T7150G","A7152G","T7159C","A7160G","G7190A","A7241C","G7286A","G7288A","A7312G","A7318C","A7372G","A7373C","A7375G","G7390A","T7444C","G7451A","C7452T","G7459A","C7469A","C7489T","A7507G","G7552A","T7555C","A7572G","T7622A","C7623A","T7624C","G7628A","A7629G","C7645T","G7657A","G7689A","T7691A","T7692C","G7717A","A7734G","A7756G","A7763C","A7782G","T7867C","A7874G","T7939A","C7988A","A7990C","G7997A","C7999T","C8005A","T8016C","T8035C","T8155C","T8164C","T8206C","G8208A","A8258T","A8276C","A8288G","T8290C","G8328T","G8329A","T8348A","A8354G","G8365A","T8371A","T8375G","T8411C","G8418A","G8427A","C8450T","A8455C","A8459C","G8462A","A8519G","C8523G","A8533G","G8534A","G8561A","T8583A","A8586C","A8623T","A8636T","A8656G","G8678C","G8682A","T8687C","T8759G","G8784C","G8798A","A8829T","G8834A","G8846A","A8876T","G8882A","A8901C","G8902C","G8918C","G8970A"],"INT":["K14R","S17T","R20K","V72I"],"RT-p51":["I178M","T200A","L283I","P294T","A322T","I375V","K390R"],"RT-p66":["I178M","T200A","L283I","P294T","A322T","I375V","K390R","E449D","A466V","S468P","K530R"],"gp120":["N1K","T3N","E4D","L57F","L58M","Q59P","N102H","N107K","N111A","S112R","N113A","S116N","-117I","E118K","K119E","-120Q","N136S","K150I","L151S","V153I","I154T","P155K","S158G","D159N","N160S","E183D","F195Y","D202N","T208M","A253T","E265T","K287A","D294E","Q300K","N304T","E319K","-326G","T368I","T371I","-372W","T374N","T387I","K393R","K404R","L414P","N433S","T436E","D446N","I463L","V478I"],"gp41":["I24L","A50M","Q56K","K90R","S107N","D109S","M118I","E119Q","G129D","L130T","K144R","K154Q","I191V","Q229N","D232N","G235S","V238A","S302N","I319L","I325L","I329V","R342I"],"nef":["S8N","E38A","R39S","Q61E","E64G","S81N","R82Q","K94M","E98D","V114I","F139L","V148L","S163C","M168I","K178N","S187P"],"p17":["I34L","G49A","S67A","A83V","I104V","K113Q","A121G","S125N","V128A"],"p24":["L83V","E128D","T171V","G208A"],"p6":["P23S","Q25H","L35M","S50*"],"p7":["R10K"],"pro":["L10V","G16E","G40E","L63V"],"rev":["S8N","E11D","L18V","S31T","A47E","R50K","H51Y","R53K","Y63H","S106P"],"tat":["K24T","R29Q","D61N","I64S","L69V","P77H"],"vif":["M29I","H30N","V51I","T63S","P156T","I159V","T180I","S186N"],"vpr":["P37T","S96P"],"vpu":["S3P","Q5H","A16G","G59E","S62Y"]},"labels":{"aa":"INT: K14R, S17T, R20K, V72I; RT-p51: I178M, T200A, L283I, P294T, A322T, I375V, K390R; RT-p66: I178M, T200A, L283I, P294T, A322T, I375V, K390R, E449D, A466V, S468P, K530R; gp120: N1K, T3N, E4D, L57F, L58M, Q59P, N102H, N107K, N111A, S112R, N113A, S116N, -117I, E118K, K119E, -120Q, N136S, K150I, L151S, V153I, I154T, P155K, S158G, D159N, N160S, E183D, F195Y, D202N, T208M, A253T, E265T, K287A, D294E, Q300K, N304T, E319K, -326G, T368I, T371I, -372W, T374N, T387I, K393R, K404R, L414P, N433S, T436E, D446N, I463L, V478I; gp41: I24L, A50M, Q56K, K90R, S107N, D109S, M118I, E119Q, G129D, L130T, K144R, K154Q, I191V, Q229N, D232N, G235S, V238A, S302N, I319L, I325L, I329V, R342I; nef: S8N, E38A, R39S, Q61E, E64G, S81N, R82Q, K94M, E98D, V114I, F139L, V148L, S163C, M168I, K178N, S187P; p17: I34L, G49A, S67A, A83V, I104V, K113Q, A121G, S125N, V128A; p24: L83V, E128D, T171V, G208A; p6: P23S, Q25H, L35M, S50*; p7: R10K; pro: L10V, G16E, G40E, L63V; rev: S8N, E11D, L18V, S31T, A47E, R50K, H51Y, R53K, Y63H, S106P; tat: K24T, R29Q, D61N, I64S, L69V, P77H; vif: M29I, H30N, V51I, T63S, P156T, I159V, T180I, S186N; vpr: P37T, S96P; vpu: S3P, Q5H, A16G, G59E, 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S106P, P107C, A108T; tat: L8I, H13Q, K24Q, V36I, R57T, Q60Y, T64N; vif: F39Y, K63E, K67T, K91L, S95R, I128R, T155A, I159T, L163V, R167K, T170V, K181R; vpr: L22I, N28R, G41N, Y45H, E48N, Q77H, A89G; vpu: Q2V, E5A, A8G, A16L, I18L, V21I, F27Y, L34V, R37K, K38R, D40N, R41W, V65A, M67L, -71L, A75I, P76L, W77G, 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L83M, H87Q, M96I, A116T, K170R, T171V, D187E, K199R, P207S; p6: S3N, E19-, I21K, T22I, P23T, S24P, P25S, Q26L, K27R, T30M, K33Q, S36G, N47S; p7: V13I, I24L, T50S; pro: I10V, L63C, I64M; rev: D9E, E10Q, T15P, H53R, S54E, E57Q, I59V, T62S, A68T, K91Q, G96E, S103P, C107D, E111G, T114D; tat: I36L, K40Q, S46C, K50E, R56T, S61A, Q66K, L69I, S75P, P77A; vif: Y39R, E45D, R47N, D78E, R93K, D101G, I124L, N140T, K141Q, K167Q, N190S, H192Q; vpr: L20I, N41D, T49N, I84L, R90G; vpu: S3P, A5T, I6-, V10I, V14A, V26A, I28L, I33V, K35R, I43F, A61T, E66A, L71T, D80N"}}},{"name":"AJ249239","node_attrs":{"div":0.2466,"accession":"AJ249239","clade_membership":{"value":"other"},"country":{"value":"CM"},"date":{"value":1996.0},"Strain_name":{"value":"96CM_MP535"},"LANL_subtype":{"value":"K"}},"branch_attrs":{"mutations":{"nuc":["A389G","G424A","A428G","T473C","G520C","C525A","A530G","C537A","C558A","G579A","A585G","C586T","G595T","G607A","A673G","G683A","A806G","A815G","T852A","T885C","G956T","T1040C","T1055C","A1101G","A1112G","T1148C","T1244C","A1277G","A1359T","A1370G","G1404A","G1419A","T1452C","C1456T","G1474A","A1493T","G1498A","A1532G","G1769C","A1786C","G1835A","A2057C","A2063C","G2173A","A2254G","C2263T","G2392A","G2509A","A2519G","G2548A","G2580A","A2613T","G2656A","A2688C","A2932G","C2978T","A3019G","A3031G","G3088A","C3095A","C3097T","G3099A","T3131C","G3169A","A3193G","A3230G","C3352T","A3403G","T3418C","A3434C","C3449A","A3456G","A3490G","A3524G","C3542T","A3543G","A3622G","A3643T","G3686A","C3823T","T3829C","G3866A","A3874C","T3898C","T4018C","G4060A","G4131C","T4144C","G4145A","A4150G","A4178G","A4195G","T4291C","G4294A","A4376G","A4427T","C4428T","A4432C","T4441A","T4537C","T4674C","G4677A","A4695C","A4775G","A4804T","C4883A","T4943A","A4944G","A4952G","A4990G","A5036C","A5046G","A5056G","A5059G","A5061C","T5147A","A5173G","G5225A","C5227T","T5228C","A5247C","G5273C","T5333C","G5359C","A5372G","G5382T","T5412C","A5461C","A5462G","T5515A","A5537C","G5538C","G5557A","A5563G","T5568C","C5585G","A5613G","T5616C","-5625T","T5627-","A5628-","G5629T","C5659T","G5673A","A5704T","T5736A","A5784G","C5792A","A5793G","C5795A","C5797T","T5799G","G5802A","A5805C","G5808T","-5815G","-5816A","-5817A","-5818C","-5819T","-5820G","-5821G","-5822G","-5823G","G5839A","G5858A","C5859A","C5869A","A5918C","A5956G","C5958A","A5959G","A5983C","T6026A","T6046C","A6124T","A6131G","A6167G","-6170T","T6171A","-6172C","G6175A","A6176G","A6177G","C6178A","A6180C","T6181C","C6183A","A6186G","T6187C","A6197G","T6199A","-6200A","-6201C","-6202T","-6203A","-6204G","-6205C","-6206A","-6207C","-6208T","-6209G","-6210T","-6211G","G6214A","-6216G","-6217C","A6221C","-6226A","G6280A","A6283G","A6303G","G6314C","A6320C","A6322T","T6328C","A6330G","C6333G","-6338G","G6339A","T6343C","G6380A","G6391A","T6395A","T6457G","A6465G","A6475G","G6481A","G6647C","-6697G","G6725A","T6763C","T6787C","A6789T","A6790G","A6798G","C6800A","A6801G","A6814G","T6815C","G6819A","C6826T","-6833A","-6834A","-6835G","-6838T","A6839G","A6840G","T6849C","T6863C","G6871A","A6884C","C6885T","T6895G","G6906C","T6925C","T6949G","-6953G","-6955G","-6956G","-6957A","-6958G","-6959A","-6960A","-6961T","-6962G","-6963G","-6964T","-6965A","-6966C","-6967T","C6991-","A7007-","C7008-","A7033G","C7064A","C7087T","A7095G","C7096T","A7108C","A7155C","A7157C","-7162T","A7219G","A7273C","A7313T","C7328T","G7333A","A7428G","G7508A","C7625T","T7630A","G7640A","C7658G","A7685T","G7689A","G7717A","T7722C","C7747T","T7796A","C7801A","G7835A","T7863C","C7921T","C7940T","C7949G","C7951A","G7957A","G7997A","C8005A","A8023C","C8080A","G8087A","C8103T","T8113C","A8168G","A8241G","T8268G","C8320T","T8321C","G8388A","A8409G","T8414A","T8426C","G8427A","A8455C","A8458G","G8487T","-8491A","G8590C","G8666A","C8699T","A8762G","G8794C","G8808A","T8813A","A8823G","T8843C","G8880A","G8945C"],"RT-p51":["I142V","C162H","R173I","H198P","H334N","G335D","S379G"],"RT-p66":["I142V","C162H","R173I","H198P","H334N","G335D","S379G","N447H","Q452K","K454R","T477A","H483C","E516D","V531I","S554A"],"gp120":["A2N","N5K","T22P","T35K","L58M","K93E","N105D","-106Y","-109A","N111S","N113V","-114V","T115S","-116P","-117A","K150R","V154L","I156L","A176T","S181T","N201K","K204R","E265Q","I281M","A291T","K312M","N315S","Q316R","G322K","-326K","N328G","K329-","I332T","S336P","S337N","T344L","G351A","-365E","-367G","-368E","-369N","-370G","-371T","T385-","N414S","N435T","T436H"],"gp41":["I4L","L9F","N42S","V69I","L108W","D109E","D113N","D125G","T128S","I140T","S165T","N166K","V178I","V187A","P216A","D232N","H259Q","D262N","A267V","I289V","E313G","V322G"],"nef":["V16I","T23A","P24R","G29R","D38A","K39R","A49S","G83A","R151A","A156T","N161D","V180I","E201D"],"p17":["R30K","R62T","L64I","L68I","L75I","V82I","T84V","K113R"],"p2":["S10P","A11V"],"p24":["S41T","E75D","I124V","T210S","G225S","V230I"],"p6":["Q26R","K27-"],"p7":["R3K","Q9H","R11K"],"pro":["V13I","M89L"],"rev":["S8P","I18T","Q24E","K30N","P31L","T34S","A37T","R50K","H53S","I59L","T62A","L78I","R80K","S82N","S89P"],"tat":["E2D","K29R","Y47N","Q54P","S61N","K63E","P70R","D80E","P81Q","G83D"],"vif":["Y30H","V31I","H73L","D99E","I120V","Y135C","I154V","K157R","K158R","T159P","H187Q"],"vpr":["Y15N","N48T","V57L","R85P","A93S"],"vpu":["V7S","G8-","I33L","E66D","L67I","D78N"]},"labels":{"aa":"RT-p51: I142V, C162H, R173I, H198P, H334N, G335D, S379G; RT-p66: I142V, C162H, R173I, H198P, H334N, G335D, S379G, N447H, Q452K, K454R, T477A, H483C, E516D, V531I, S554A; gp120: A2N, N5K, T22P, T35K, L58M, K93E, N105D, -106Y, -109A, N111S, N113V, -114V, T115S, -116P, -117A, K150R, V154L, I156L, A176T, S181T, N201K, K204R, E265Q, I281M, A291T, K312M, N315S, Q316R, G322K, -326K, N328G, K329-, I332T, S336P, S337N, T344L, G351A, -365E, -367G, -368E, -369N, -370G, -371T, T385-, N414S, N435T, T436H; gp41: I4L, L9F, N42S, V69I, L108W, D109E, D113N, D125G, T128S, I140T, S165T, N166K, V178I, V187A, P216A, D232N, H259Q, D262N, A267V, I289V, E313G, V322G; nef: V16I, T23A, P24R, G29R, D38A, K39R, A49S, G83A, R151A, A156T, N161D, V180I, E201D; p17: R30K, R62T, L64I, L68I, L75I, V82I, T84V, K113R; p2: S10P, A11V; p24: S41T, E75D, I124V, T210S, G225S, V230I; p6: Q26R, K27-; p7: R3K, Q9H, R11K; pro: V13I, M89L; rev: S8P, I18T, Q24E, K30N, P31L, T34S, A37T, R50K, H53S, I59L, T62A, L78I, R80K, S82N, S89P; tat: E2D, K29R, Y47N, Q54P, S61N, K63E, P70R, D80E, P81Q, G83D; vif: Y30H, V31I, H73L, D99E, I120V, Y135C, I154V, K157R, K158R, T159P, H187Q; vpr: Y15N, N48T, V57L, R85P, A93S; vpu: V7S, G8-, I33L, E66D, L67I, 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K277R, T286A; RT-p66: K277R, T286A; gp120: N111-, I242V, G307R, G322R, K416R, T436-, I468V; gp41: D125N, E151A, V235I, G314W, I318V, V321I, V322G, H331N; nef: E28A, E98D, S169C; p17: R58Q, L61M, G62E, S67A, Q69K, E107I, K113Q; p2: T8Q, -13I; p24: L6A, T54M, T58I, K203R; p6: L1P, Q26-; p7: R10K, V13-, I24L; pro: H69K; tat: 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E38A, V43I, A53P, A56S, E64D, F85L, M173I, D174E, E176P, Q198E; p1: N9S; p17: A15S, R20Q, K26S, K28R, G49C, M61I, L64I, A67V, Y79F, I104L, K109E, N124D, S126N; p2: N9G, -12S; p24: A14P, V59I, I91V, T110N, T210S; p6: L15W, M17I, G18R, I21M; p7: Q9K; pro: K69Q; rev: E11D, R43K, R66G, H82R, T94V, V104G, S112P; tat: A21P, Q35P, L39V, T40A, T58P, P59S; vif: R19K, S52C, T68A, L109M, E117D, P131T, Q136P, T155A, T157A, R159T, K160R; vpr: A4T, I61T, Q86G; vpu: P3-, L4I, Q5L, V6A, V7I, A8G, I28L, L33W, R34K, F43Y, D44N, R47I, E66A, H73P"}}},{"name":"KX389622","node_attrs":{"div":0.28815999999999997,"accession":"KX389622","clade_membership":{"value":"other"},"country":{"value":"NG"},"date":{"value":2009.0},"Strain_name":{"value":"09NG010499"},"LANL_subtype":{"value":"A7"}},"branch_attrs":{"mutations":{"nuc":["A369C","G378A","C379A","G386A","A418C","A423C","A425G","G428A","C435A","G452A","C471G","T473C","C476T","C496G","A516C","A530G","C537A","A562G","T572C","A605C","A644G","A654C","A663C","A669C","A673G","A674G","A692C","A706G","C713T","C731T","T774A","T782C","G791A","C827T","G977A","T992A","T1001G","A1017C","G1022A","A1089G","C1137T","T1182C","C1211T","G1268A","C1330A","C1331T","T1334C","A1352G","T1385C","G1388A","-1455C","-1456A","-1457A","A1458-","C1460-","A1461G","G1474A","T1481C","G1486A","A1495G","A1499C","T1502C","T1559C","A1588G","G1589A","A1592G","A1607G","G1720T","C1721A","C1722-","G1724-","G1725-","G1726-","G1727-","A1728-","T1729-","G1730-","A1743G","T1749C","C1761T","A1762C","C1825A","A1826G","C1831T","A1857G","A1915G","A1926G","C1985A","T1986C","C2044T","G2134A","A2212T","G2215A","T2257C","A2260T","G2273A","A2311G","T2353C","A2416G","A2455G","G2456C","A2519G","G2524A","C2613A","A2615G","C2635A","C2740T","A2767G","A2830G","A2881G","C2909G","T2968G","A2974T","G3010A","A3031G","A3071G","T3121C","A3142G","A3196G","G3211A","A3217G","A3238G","A3247C","A3249G","A3265G","A3280G","C3322A","T3349C","C3359T","A3370G","G3398T","G3427A","T3469C","C3504A","T3535A","T3566C","A3578G","A3622G","T3644C","A3646G","G3679A","A3715G","C3751T","G3766A","G3772A","A3781G","T3793C","A3808G","G3816A","C3857T","G3866A","A3877G","T3967C","A3979G","A3982G","A4084G","G4092C","G4276A","T4288C","A4391T","C4396A","A4397T","A4498G","A4525G","G4573A","T4667C","G4677A","C4679A","A4684G","T4702C","C4761G","A4768T","A4773C","G4774A","A4775C","T4776C","A4784G","G4786A","G4816A","A4819C","C4820T","T4827C","T4858A","A4862T","A4863G","T4917C","C4937A","T5018C","C5053T","A5055C","A5059G","A5065C","A5069G","G5075A","G5086A","A5094G","T5147C","C5168T","G5176A","C5213G","C5214T","G5276C","A5285G","G5359C","G5362A","C5392T","C5393A","G5403T","T5412C","C5437G","T5472C","G5482A","T5483A","T5484G","C5491T","T5515C","C5554T","A5557G","T5562C","A5581T","A5587G","G5599T","T5602G","A5603-","-5611T","-5612A","-5613C","-5614G","T5620C","A5626G","G5647A","A5659C","G5671A","T5672C","G5673T","A5701C","T5704C","A5707G","G5708T","A5709G","C5727T","C5763T","A5788G","C5792A","A5793G","C5795A","A5796G","C5797T","T5799G","T5801C","G5802A","A5806C","G5808T","-5815G","-5816A","-5817G","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","G5842A","T5857A","-5866C","T5899G","G5902A","C5924T","T5951C","G5954C","T5964C","C5989T","A6008G","T6026C","G6044A","T6046G","C6067G","G6076T","A6088G","C6101A","T6148C","-6164A","-6165G","-6169G","-6170G","-6171T","-6172C","A6174C","-6175A","G6179A","C6183A","A6186G","A6192C","A6194C","-6196C","C6198A","T6199C","-6201C","-6203G","-6205C","-6206C","-6207C","C6209A","T6210A","-6211C","T6213A","A6214C","C6216A","T6217C","-6218A","G6225A","C6241T","T6242A","T6244C","T6246A","A6253G","A6263G","G6267T","T6287C","A6304G","A6305C","G6311A","T6322A","G6323A","A6324C","T6325A","A6329G","T6331A","T6334C","A6336C","T6337G","C6340T","T6385C","T6395A","C6396A","C6397T","C6412A","G6451A","T6457G","G6466T","C6482A","A6489G","A6535C","A6568G","A6571G","G6573A","G6575A","A6577C","T6582G","A6583G","A6589C","T6599C","C6607T","C6618T","T6634A","C6641T","A6648C","C6661T","A6669G","A6683G","-6693G","A6728G","T6745C","-6778T","A6810G","A6811C","C6812G","G6819A","G6821A","A6822G","C6826T","A6837C","A6848G","A6854C","T6856A","A6859T","A6877G","C6938T","C6951A","T6957C","-6958A","C6964G","C6966A","-6971A","-6972C","-6973A","-6974A","-6975A","-6976T","-6981G","-6984T","A6986G","A6987G","-6994G","A7000T","A7036G","A7044G","T7045A","C7088A","A7093G","C7114T","C7124A","C7127A","A7133G","C7134T","T7150G","T7159A","-7162C","-7164A","-7165G","T7217C","T7222C","G7225A","C7250T","A7269G","G7276A","A7345G","G7459A","T7516G","T7597C","C7625T","A7627T","A7633C","G7640A","C7658G","A7673G","C7678T","G7688A","A7690C","A7700T","A7701C","A7705G","T7783C","A7799C","A7818G","A7840G","A7846G","A7880G","T7894C","T7913C","A7921G","G7995A","A8011C","C8047T","C8112T","T8138A","C8168G","T8169C","A8180G","G8216A","G8268C","A8275C","T8287C","C8291A","T8332A","G8349A","G8350A","A8364G","G8373A","T8374A","A8405G","T8444C","A8446G","T8456G","G8490T","C8499G","G8516A","A8525T","A8531T","C8552T","T8582C","A8584T","A8591G","A8597C","C8607T","A8608T","C8651T","C8676T","C8699A","T8740C","A8746T","C8747T","C8775T","G8784A","A8786G","A8794G","G8807A","C8831T","G8834A","T8835C","G8862-","A8863-","G8864-","G8868A","A8874G","T8883C","A8885G","G8888A","A8893G","G8894A","G8936A","A8950T","G8971-","T8972-","C8978A","C9023A","T9028C","T9029A","A9042G"],"INT":["R14K","V31I","G106A","N134D","T206S","D207E","I208L"],"RT-p51":["K39N","V60I","D121H","I142V","K174E","P272A","D291E","I326V","K385R","V435L"],"RT-p66":["K39N","V60I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R14K, V31I, G106A, N134D, T206S, D207E, I208L; RT-p51: K39N, V60I, D121H, I142V, K174E, P272A, D291E, I326V, K385R, V435L; RT-p66: K39N, V60I, D121H, I142V, K174E, P272A, I326V, K385R, V435L, T470N, H480Q, S491P, I495V, R512K; gp120: S1R, E4D, Y33H, D34H, V37A, N52D, P57N, D64K, N71K, E74D, L83I, N105K, -106V, -107T, -109N, -110N, -111N, -112T, -113I, -114E, -115K, -116E, -117M, -118R, E125-, M126-, K127-, S130T, F131Y, V133M, I137V, R138I, I151L, S157T, N159E, N161T, S162N, S181N, N201K, E204N, P210T, K212R, G240E, E241N, V242I, I243R, R245S, T255I, Q265P, N272S, K277E, H280R, T292A, K309E, E319G, Q320E, R322K, E323R, -327N, -328T, K329T, I332V, N334Q, Q335N, N361D, T366N, -368T, T371N, -372W, -376G, -377I, -378G, -379S, -381E, -382T, N397R, L424I, L425I, T427V, N432K, N435T, E436D, T437K, K472R; gp41: N96T, Q108Y, E110D, D113N, Q119E, I124V, Q129N, N166H, K172R, I193V, R231K, T270I, R276H, W279R, L289A, S293G, D305N, G322A, R324S, L330I; nef: G3N, S8G, V11K, Q35R, A50S, Q61H, E63D, Y81F, H89F, I133T, Y135F, V148M, K151R, D175T, E176-, R178G, K184R, R194I, Y203F; p17: K12Q, A15K, K28T, K30Q, L34I, L46V, A54G, M61L, L68I, K76R, Q90H, I107L, K110Q, K112Q, Q113R, N124S; p2: -12Q, I13V; p24: L15I, H87Q, M96L, S120G, T200N; p6: S14I, L15G, G16-, M17-, G18-, E19-, I21E, S23A, S24P, P25S, -26P, Q28S, P49Q, S51L; p7: R3K, R7K, K10R, T11N, K41R; pro: I10V, K20R, K43R, L63T; rev: V16A, I55L, P67S, V97E, S107C, E111G; tat: P6Y, E9D, V36K, Y47H, H60Y, N61D, I69L, K71E; vif: V31I, K33R, F39S, L59V, D61V, R63H, R67K, R77K, D78A, L91Q, K92N, R93G, Y111H, P156L, T157P, K158R, K160T, R167K, T170A; vpr: Y15H, N28Q, P37V, E58Q, I61V, R85P, S96L; vpu: -2Y, P3A, V14I, I18L, V22T, K32Q, R34V, T61A, 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T12R, L19I, D35E, N37D, K69H, V82I; rev: S8A, E10A, F73L, K115E, E116K; tat: N7S, K19T, A21P, N23S, Y32W, K40Q, K53R, Q54R, T58A, P59S, P68L, L74I, S75P, P81S, P84Q; vif: V31I, F39Y, V66I, R77K, D99E, S116A, E117D, H127E, S130R, N140T, K141Q, T155K, T157K, R159I, R167K; vpr: N28Q, H40Q, H45Y, Q86R, N91D, S94G; vpu: I13V, A15V, I25L, F27G, L33V, R34L, M67V, 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G4R, V32I, W108*; RT-p51: T35E, G45R, G51R, W88*, G112K, G190R, W212*, G213R, M230I, K311R, I326V, I377V, W383*, G384E, W398*, M403I, I435M; RT-p66: T35E, G45R, G51R, W88*, G112K, G190R, W212*, G213R, M230I, K311R, I326V, I377V, W383*, G384E, W398*, M403I, I435M, E449K, G462R, E516D, E529K, W535*, G541K, G555R; gp120: A20S, K35A, E59D, N102E, T104N, -107N, -109T, -115S, -116S, -117N, -118S, -119N, -120I, -121A, -122K, -123K, K143Q, Y145H, N159D, N161K, K164I, N167S, A191T, T216S, Q265S, S272G, N273I, N274K, T275Q, R276K, S278I, Y290H, A291T, G296-, D297-, I298-, N304T, S306N, R307G, T313A, I332V, K335T, S336P, G351R, S365N, -368F, T374S, S377H, -379T, N381K, D384G, T387I, K412Q, R416S, -433S, N434T, E438-, T439-; gp41: D113N, E143D, V187I, G221R, G225E, L304V, A310V, I321L, G322A, L325F, R334T, F340L; nef: S8R, L10V, V11P, P14A, K39R, H40Y, C55L, E59Q, G83A, N126C, N157T, R188H; p17: I68V, Y79H, D93E, M107L, Q108R; p2: V7A; p24: D187E; p6: G16E, E19-, I21G, T22I, S23T, -26L, L38P, V39S, P49L; pro: G86R; rev: A10T, I21L, R39K, P67S; tat: P3L, D5E, R56H, N67T, P70S, R78Q; vif: K33R, L109M, I128L, S186N; vpr: T19A, Q77H, I83V, I84L, V89G, S96T; vpu: V10I, I20V, V26A, K37R, K38R, I43L, E48D, E58D, L61T, S62-, G68-, -69V, -70E, -71V, -72G, -73E, -74Y, -75D, -76L, -77L, -78V, -79G"}}},{"name":"MW353967","node_attrs":{"div":0.29044,"accession":"MW353967","clade_membership":{"value":"other"},"country":{"value":"CV"},"date":{"value":2010.0},"Strain_name":{"value":"CV.10.126"},"LANL_subtype":{"value":"A8"}},"branch_attrs":{"mutations":{"nuc":["A419G","A470C","G495T","A576G","G614T","A619G","C623T","C679A","G712A","C713A","A714C","T722C","T774A","T789C","G803A","A818G","C827T","A839G","A866G","C917T","T944C","G977A","C1060A","G1078C","A1196G","G1199A","G1313A","T1316C","C1403T","G1424A","-1455C","-1456C","-1457A","G1486A","G1489A","C1514T","A1592G","-1719C","-1720T","-1721G","C1722A","G1736A","C1755T","G1760A","G1772A","G1777A","T1796C","T1854C","T1873C","G2065A","A2203G","A2230G","A2293G","G2328A","A2422G","A2545G","G2602A","C2613T","C2941T","A2992T","G3016A","C3023A","A3031C","C3067T","A3167G","C3171G","A3200T","G3211A","A3229G","G3250A","A3367G","G3523A","A3592G","A3642C","C3653G","A3682T","A3715G","A3757G","A3833C","G3866A","C3892T","G3965A","T4144C","G4145T","A4176G","G4186A","G4220A","G4228A","G4244A","A4293G","G4301C","A4427T","C4428T","A4432C","T4441A","T4656C","G4695A","G4696A","T4738C","A4878G","C4911T","G4913A","A5049G","A5061G","G5087A","G5140A","C5168G","G5170A","A5247G","A5305T","G5308A","A5357G","C5358A","T5515C","G5546A","A5547C","A5575G","A5611T","T5613A","C5684T","T5688A","A5709C","C5787A","A5788T","C5789T","A5793C","G5794A","A5796T","T5799G","G5830A","A5861G","C5869A","A5946G","T5956G","C5958A","C6097T","C6115T","A6131C","T6154C","G6158A","-6165C","A6174T","-6175G","A6176-","C6178-","T6181-","A6186C","T6187A","C6189T","A6194T","-6196C","-6201G","-6202C","-6203G","-6205A","-6206C","-6207C","-6208A","T6210C","-6211T","-6212C","-6215C","A6222C","A6230G","A6282G","G6323A","T6341A","A6342G","T6343C","A6346G","C6347A","A6349G","G6403A","T6457G","A6462G","C6482A","T6634C","A6636C","A6639T","A6684G","A6685G","T6690-","-6733A","-6734G","-6735A","-6736T","C6758T","A6776G","A6780C","A6790G","A6800G","T6932A","G6935C","C6958T","-6969T","A6971C","-6972A","-6973T","-6975C","-6976A","-6981T","-6982G","-6983A","-6984G","C6988T","A6997C","T7009A","C7015G","A7089G","A7094G","T7127A","T7150G","A7290G","T7462C","A7533G","A7583C","C7605T","T7606G","T7609C","A7691C","T7796A","A7807G","A7887G","C7906T","T7930C","A7931C","A7971G","C7993A","C8080A","G8110A","C8120-","T8121-","T8122-","T8124G","A8130T","C8131G","T8155C","T8164C","T8200C","T8278G","A8323T","G8370T","G8469A","T8640C","A8656G","A8660G","C8688A","C8699T","T8770A","A8794G","G8795T","C8812A","A8823G","G8830A","A8859G","G8871C","C8921T","A8922C","A8954G","C8960A","A8980G","C9003T"],"INT":["V31I","D64N","A124S","D134G","G149R","E157K","K173R","V176L","T218L","K219N","N222K"],"RT-p51":["R78K","A173V","L310I","E312D","R358G","S359C","T369S"],"RT-p66":["R78K","A173V","L310I","E312D","R358G","S359C","T369S","R512K","E516A","Q520E","E529D"],"gp120":["T3A","N5K","K31R","D34E","K93Q","-107M","-109M","-110T","I126V","K143R","D157N","Y163S","N201K","K203R","P210T","D261A","E262V","H302Y","T308A","K309A","K316E","S360T","G361Q","-367F","-368N","T371F","-379S","K412R","L425I","N432Q","E436T","T437N","E479G"],"gp41":["K77R","T94P","T101M","Q129K","I130L","S165T","K195R","T210P","E223G","L273R","L274G","G275L"],"nef":["V43I","K105R","H116N","F143Y","E151G","N161D","S163N","M173V","D177H","R194L","C206*"],"p17":["A54S","T81A","K95R","T115K"],"p2":["N11P","-12N"],"p24":["L15I","T110N","G116A"],"p6":["S24P","P25L","R33K"],"p7":["R7K","S8N"],"pro":["I19T","H69Q","M89I"],"rev":["E11T","Y28P","R32G","Q49K","L78I","D88N","S92G","G93T","T94E","Q95T","S103P","S106P"],"tat":["Y47H","R57N","N67D","I74T"],"vif":["G37K","V51A","I98V","K155E","I159V","G185E"],"vpr":["L22V","N48S","I84M"],"vpu":["T2S","D60E","N80-","N81D"]},"labels":{"aa":"INT: V31I, D64N, A124S, D134G, G149R, E157K, K173R, V176L, T218L, K219N, N222K; RT-p51: R78K, A173V, L310I, E312D, R358G, S359C, T369S; RT-p66: R78K, A173V, L310I, E312D, R358G, S359C, T369S, R512K, E516A, Q520E, E529D; gp120: T3A, N5K, K31R, D34E, K93Q, -107M, -109M, -110T, I126V, K143R, D157N, Y163S, N201K, K203R, P210T, D261A, E262V, H302Y, T308A, K309A, K316E, S360T, G361Q, -367F, -368N, T371F, -379S, K412R, L425I, N432Q, E436T, T437N, E479G; gp41: K77R, T94P, T101M, Q129K, I130L, S165T, K195R, T210P, E223G, L273R, L274G, G275L; nef: V43I, K105R, H116N, F143Y, E151G, N161D, S163N, M173V, D177H, R194L, C206*; p17: A54S, T81A, K95R, T115K; p2: N11P, -12N; p24: L15I, T110N, G116A; p6: S24P, P25L, R33K; p7: R7K, S8N; pro: I19T, H69Q, M89I; rev: E11T, Y28P, R32G, Q49K, L78I, D88N, S92G, G93T, T94E, Q95T, S103P, S106P; tat: Y47H, R57N, N67D, I74T; vif: G37K, V51A, I98V, K155E, I159V, G185E; vpr: L22V, N48S, I84M; vpu: T2S, D60E, N80-, N81D"}}}]}]}]}]},{"name":"other_NODE_0000047","node_attrs":{"div":0.18525999999999998,"clade_membership":{"value":"other"}},"branch_attrs":{"mutations":{"nuc":["G43A","A50G","-159A","G166A","A214T","A571T","G716-","C1245T","G1474A","G1476A","G1687A","A1691G","A1743G","T1754C","C1775A","G1784A","T1828A","A1839G","A1857T","T1864C","T1873C","G1912A","A3787C","A3886G","A4182C","T4412C","T4543A","A5236G","G5359C","C5371G","G5448A","A5581G","-5612A","T5616A","T5627C","A5628T","C5639G","A5655C","A5659G","T5660C","A5664C","G5692C","A5701G","A5715G","C5727A","A5734C","C5769A","C5827T","A5840T","A6024C","C6198G","A6456G","G6481A","G6547A","-6833A","-6834A","A7040G","A7152-","-7162G","T7604G","C7938A","A8143G","C8171T","A8180G","C8221A","C8223T","G8240A","G8242C","G8280T","A8459G","G8590C","A8591T","T8786G","A8893G","T9017C","-9109T"],"INT":["K136T","D256E"],"gp120":["H324Q","K361Q","I396V"],"gp41":["S101A","T212H","S293G","T307I","E313N","G326F"],"nef":["G83A","K184R"],"p17":["Y79F"],"p6":["S3N","T22A","Q30P","D32E","L50*"],"p7":["G4S"],"pro":["K14R","K20I"],"rev":["A108V","E111G"],"tat":["I69V","P77T"],"vpr":["R85P","A89G"],"vpu":["V7A","A11G","I18A","E29Q","I43L","H73-"]},"labels":{"aa":"INT: K136T, D256E; gp120: H324Q, K361Q, I396V; gp41: S101A, T212H, S293G, T307I, E313N, G326F; nef: G83A, K184R; p17: Y79F; p6: S3N, T22A, Q30P, D32E, L50*; p7: G4S; pro: K14R, K20I; rev: A108V, E111G; tat: I69V, P77T; vpr: R85P, A89G; vpu: V7A, A11G, I18A, E29Q, I43L, 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R20K, S119P; RT-p51: T35V, D123E, S162C, E207Q, Q245V, K356R, R358K, T377Q, T403M; RT-p66: T35V, D123E, S162C, K207Q, Q245V, K356R, R358K, T377Q, T403M, R463K, N519S, S534A; gp120: T3S, E4D, K18E, E19D, T21D, T23P, D34S, V37S, Q86E, N108-, N113-, E125D, N158-, N159-, S162-, T170V, T174K, E183D, N201R, K204E, V242I, I243M, D251N, T255V, E262K, V264I, Q300K, H302Y, N304E, S306N, K312E, L314I, K315Q, A318K, E319A, R322A, Q324S, F325Y, -326N, K329I, I331S, S336P, P341L, M345T, G351R, Q361E, T366S, W367N, -368N, -372N, N397R, E401R, K404Q, S412A, R416T, L425I, L426I, -433S, N434T, G443A, E464K, K474R, Q479E; gp41: N42S, I84L, M118I, L130H, E148D, D232G, A243P, F263L, R277S, V318I, A325G, N331H; nef: G3S, I10V, K39R, E158N, E176D; p1: I5L; p17: G62S, D93E, I107L, T115M, D121G; p2: -10A, -12S; p24: M10P; p6: P5L, E29G, K33-, E34-, Y36-, P37-, T39I; pro: L63P; rev: S61T, A68P; tat: N24K, K29R, Q54H, S61G; vif: F39C, R41K, R47T, H48N, K50R, V51I, D61E, D101G, L109Q, I128R, R132S, I154V, G185D; vpr: Y15H, I84S, Q86R; vpu: A16G, T24A, D44E, E66D, P76-, D78V, V79G, D81N"}},"children":[{"name":"AY900571","node_attrs":{"div":0.27465,"accession":"AY900571","clade_membership":{"value":"other"},"country":{"value":"CU"},"date":{"value":2003.0},"Strain_name":{"value":"CB118"},"LANL_subtype":{"value":"CRF23_BG"}},"branch_attrs":{"mutations":{"nuc":["A461C","C558A","A576G","A653G","G706A","A711G","T824C","C988A","G992A","C1005G","T1052C","G1090A","A1208G","C1211T","C1220T","G1232A","C1360G","A1361T","G1394A","G1443A","A1474G","A1529T","C1571A","G1592T","G1664A","T1676C","G1727A","A1776C","T2043C","A2216T","A2293G","G2294A","T2383C","G2392T","T2597C","A2627T","C2680T","G2725A","G2925A","G2951A","G3173A","T3197C","C3207T","G3316A","T4216C","A4243G","A4522G","A4536G","A4650C","T4672A","G4677A","A4736G","G4779A","C4820T","A4951G","G5062T","G5141C","C5234G","A5235T","G5296A","C5306T","T5313C","C5397T","G5403C","A5448G","G5462T","C5496A","A5499G","C5508A","A5545G","A5556G","G5558A","A5576T","T5604G","A5613C","A5632G","A5691T","A5693T","G5701C","T5844G","C5911T","G5915T","C5998T","T6026C","A6065C","T6155C","-6167A","-6169G","-6170G","-6172A","-6173G","-6175C","A6176T","A6177G","A6181G","A6188T","A6189G","A6192C","A6198C","-6208A","-6210T","-6211G","-6212G","-6214A","-6215C","-6218T","-6220A","-6222C","-6225C","C6229T","A6276G","G6277T","G6314A","A6326G","T6331G","A6338G","G6368A","A6430G","G6442A","A6489G","A6574G","C6619T","A6639G","A6640C","G6647A","A6648C","A6695T","A6733T","G6743A","A6752G","A6759T","A6765T","A6780C","A6781C","A6796G","C6826A","T6827C","-6832G","A6833C","A6835C","A6837G","-6838A","A6842-","C6843-","A6844C","A6854G","A6855G","A6900T","A6936G","T6949C","G6954-","G6968A","G6970T","-6972G","-6974A","-6975A","-6976T","A7095G","A7106G","T7147G","A7148C","A7149C","-7152A","A7155G","A7158G","G7160A","G7162T","A7163-","C7179T","A7296G","A7313C","A7315G","C7392T","G7517C","T7622A","T7630A","C7651T","A7666G","G7688C","G7689A","A7721C","C7723A","A7743G","T7783C","G7831A","T7865A","T7867G","A7912C","T8016C","G8017C","A8029G","C8033A","C8037T","G8114T","A8130G","G8134C","T8171C","A8222G","T8243G","G8350A","A8367-","G8368-","C8369-","T8371-","A8372-","G8373-","T8374-","T8375-","G8376-","G8377-","A8378-","C8382G","A8409G","C8499G","T8505C","C8514G","T8567C","A8647G","C8648G","C8747T","G8786A","G8798T","A8812G","C8869A","G8875A","A8876G","T8935G","-8971G","-8974G","A9015T","T9036-","T9054G"],"INT":["T124A","N134D","N254S"],"RT-p51":["M41L","D67N","I178L","R277K","A286T","A360T","A371V"],"RT-p66":["M41L","D67N","I178L","R277K","A286T","A360T","A371V"],"gp120":["D21Y","N71H","N105K","-106V","-107D","-108C","-109E","-111R","-112N","-113C","-114T","-115T","-124A","K141S","V154M","-158D","-159K","-162G","K212R","K262S","E265T","I281F","D297N","K300E","Y302F","E304V","E309A","I314M","T330-","N334G","Q335P","N349I","E361G","-371S","N414S","S418V","E438-","T439-","P442L","E481G"],"gp41":["I4L","M24I","A30V","V72L","S107T","D109E","E119Q","G129H","H130Q","N140Q","Q147R","M176I","F188M","E225G","V238A","L244I","A245V","V271L","I307V","W314G","L340F"],"nef":["S3N","S9-","V10-","V11-","G12-","P14A","T23A","C55R","L58V","Y102W","E152D","N157S","E177D","R178K","L198R"],"p17":["E42D","L75I","T81A","S124N","S126G"],"p2":["V7I","S8P"],"p24":["P86Q","P92A","S120N","T210S"],"p6":["-33Q","-34D","-36I","L38-","I39-"],"p7":["E21D","E42D"],"pro":["I82T"],"rev":["K14R","A15T","I21F","E57Q","T61A","A62D","S89I","G96Q","S107P","V108A"],"tat":["E9D","R29M","R57G","G61D","N67I"],"vif":["N22H","M29K","V31I","V65I","N122S","R159I"],"vpr":["E13Q","Q44V","I70T"],"vpu":["Q2H","I9V","Q29L","E32Q","D60E","E62A","E63A","V69D","D70F","-71D","-72H"]},"labels":{"aa":"INT: 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S24N, L63I, L74I, I101L, T124G, E256D; RT-p51: K20R, A158S, E177D, A200T, E204K, Q245E, P272A, A297R, D324E, G333E, Q334L, I341V, S359G, T377Q, K385R, E399D, T400A; RT-p66: K20R, A158S, E177D, A200T, E204K, Q245E, P272A, A297R, D324E, G333E, Q334L, I341V, S359G, T377Q, K385R, E399D, T400A, D460N, R461K, V467I, S468C, H483N, N519S, S534A, S554A; gp120: N5K, D34N, P57G, K69Q, N105D, -106F, -107K, -109D, -111S, -114N, -115S, -116S, -117E, -118R, -119I, -122E, -123R, -124G, E136S, I137R, D139G, K141L, K142Q, D157T, N160S, N161Y, I166V, N167S, T172V, F195Y, K212T, K224R, V227I, I243V, S246Y, E247K, L249V, D251N, T255I, H280P, I281M, Q287R, F289V, D297N, V305L, S306N, R307G, N311K, K315R, -326R, S336T, S337T, I343V, T344V, S347N, S360T, -368I, -369W, S370N, -373S, -374T, -375E, -376E, -377S, -378N, -379N, -380N, -381D, -382S, I386L, M398R, N414Q, S418L, T437S, G443A, K462R; gp41: Q32L, V69I, N96A, D109N, N125S, L130V, N133T, E137N, N140S, A151E, M176I, G215E, S251N, S256T, H258R, D305N, 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D73N"}}},{"name":"DQ366663","node_attrs":{"div":0.12834999999999996,"accession":"DQ366663","clade_membership":{"value":"CRF53_01B"},"country":{"value":"MY"},"date":{"value":2004.0},"Strain_name":{"value":"04MYKL016_1"},"LANL_subtype":{"value":"CRF53_01B"}},"branch_attrs":{"mutations":{"nuc":["A426C","A464G","C471G","C583T","C587T","T635A","T636C","C655T","A664G","G667A","A678C","G709A","C710T","A725G","C731T","T858C","C979T","T1052C","C1137T","T1335C","T1362C","C1444T","G1586A","G1621A","C1627T","C1689A","A1691G","T1791G","G1845A","A2002G","A2007G","T2245A","C2356T","C2386A","C2575T","G2707A","G2909C","A2918C","A2925G","C2978T","A2985G","C3129A","C3178T","T3181C","A3200G","A3241C","G3307A","G3431T","T3668C","A3866G","A3955G","A4083G","A4182G","A4228G","A4695C","C4761A","G4769A","T4772A","C4826A","T4865A","A5112G","A5246C","T5294C","C5384T","T5412G","C5438A","A5626T","T5628G","T5695G","T5696C","G5734A","C5801G","G5812C","T5884G","T5917G","A6024C","C6166T","A6167G","A6168T","T6169G","-6170A","-6171C","-6172C","-6174A","-6175A","T6178C","T6180A","C6181T","C6183G","T6184C","A6186C","T6187A","A6194G","A6197T","G6201A","-6203A","-6204G","-6205A","-6217A","G6224A","-6225T","-6226A","-6229A","-6230A","T6241C","A6251G","G6253A","A6276C","T6287A","A6303G","T6328C","A6330G","T6337C","T6427G","T6446C","G6463A","T6466G","G6577A","G6605A","G6647A","A6659T","C6660T","A6692T","A6734G","T6735A","G6764C","G6788A","A6818G","C6824A","A6840G","T6849G","T6888C","G6889A","A6937C","-6955C","-6956A","-6957T","-6958A","-6959A","-6960A","-6985A","-6986A","-6987A","-6988T","-6989A","-6990A","-6991C","-6993C","-6994G","-6995G","-6996G","-6998G","-7000G","-7001T","-7002G","T7039C","T7059C","T7090G","A7101C","A7152T","A7155G","A7158G","A7161C","C7164A","A7175C","A7190G","A7195G","A7197G","A7540G","A7542C","A7626T","G7734A","T7801A","A7935T","G7977A","G8019C","G8055A","T8097C","G8145T","C8223T","G8330T","T8366C","G8421A","G8469A","G8534T","C8568T","G8588A","A8647G","C8648G","T8700C","T8708C","A8827G","G8871C","A8873C","G8875A","T8935G","G8936T","A8947T","G8983A"],"INT":["I31V","I60M","K103R","Q136R"],"RT-p51":["A272P","K275Q","K277R","E297G","P345Q","T369A"],"RT-p66":["A272P","K275Q","K277R","E297G","P345Q","T369A","A446S"],"gp120":["D21E","H57P","V126I","K127R","M133V","K141T","Y145N","K150R","N159S","S162N","N204K","D251N","T269F","T280S","E304Q","E312K","E319K","K322E","H324N","K329R","M345T","K361N","S365N","-368I","-369K","-378N","-379N","E381G","-382G","-383C","V402A","S412R","S414N","N416T","N433I","N434S","N435S","E436A","N446D","I447M","K448R"],"gp41":["M54L","K80T","Y108F","R144K","N166K","H211L","G225E","S239T","S251N","L265S","G281V","A307V","A343S"],"nef":["A27T","V43I","S55C","T56A","Y102W","F120L","Q125H","N162S","E177H","R178K","S188A","L198R","Y202F"],"p17":["M31L","L46V","A83V","K110R","S111N","T115P","S125N"],"p2":["Q6H","A7V","-10T","A11G"],"p24":["E71D","T83V"],"p6":["L38V"],"p7":["R52K","A54V"],"pro":["G16E","K70R"],"rev":["E57D","R99S"],"tat":["P3L","N12K","A21D","I76F"],"vif":["K37Q","L59I","H80Q","N93K","K176E"],"vpr":["Q3R","N48H"],"vpu":["S7W","F30A","K35R","V43I","A65G","-68L","V69-"]},"labels":{"aa":"INT: I31V, I60M, K103R, Q136R; RT-p51: A272P, K275Q, K277R, E297G, P345Q, T369A; RT-p66: A272P, K275Q, K277R, E297G, P345Q, T369A, A446S; gp120: D21E, H57P, V126I, K127R, M133V, K141T, Y145N, K150R, N159S, S162N, N204K, D251N, T269F, T280S, E304Q, E312K, E319K, K322E, H324N, K329R, M345T, K361N, S365N, -368I, -369K, -378N, -379N, E381G, -382G, -383C, V402A, S412R, S414N, N416T, N433I, N434S, N435S, E436A, N446D, I447M, K448R; gp41: M54L, K80T, Y108F, R144K, N166K, H211L, G225E, S239T, S251N, L265S, G281V, A307V, A343S; nef: A27T, V43I, S55C, T56A, Y102W, F120L, Q125H, N162S, E177H, R178K, S188A, L198R, Y202F; p17: M31L, L46V, A83V, K110R, S111N, T115P, S125N; p2: Q6H, A7V, -10T, A11G; p24: E71D, T83V; p6: L38V; p7: R52K, A54V; pro: G16E, K70R; rev: E57D, R99S; tat: P3L, N12K, A21D, I76F; vif: K37Q, L59I, H80Q, N93K, K176E; vpr: Q3R, N48H; vpu: S7W, F30A, K35R, V43I, A65G, -68L, V69-"}}}]},{"name":"CRF53_01B_NODE_0000002","node_attrs":{"div":0.11541999999999998,"clade_membership":{"value":"CRF53_01B"}},"branch_attrs":{"mutations":{"nuc":["A665G","T668C","G697A","G1078C","C1247T","G1418A","T1752C","A2230G","C2236T","G2350A","T2392G","G2727A","T2873C","G4243A","C4679A","T4701G","A4774G","T5237C","C5651T","T5695A","A6185G","G6195A","A6212G","T6242A","T6634C","G6716A","-6955C","-6959A","-6961A","-6986A","-6987A","-6988T","-6989A","-6990C","-6993C","-6995G","-6998T","-7000T","-7002C","C7008A","T7014C","G7106A","T7162G","G7456A","G7534A","A7957G","A8130G"],"RT-p51":["S211N"],"RT-p66":["S211N"],"gp120":["S130T","-378N","-379T","-382C","T385N","I387T"],"gp41":["L263F"],"p17":["G121D"],"p2":["-10T"],"p24":["G116A"],"p6":["S25P"],"rev":["T37A"],"tat":["D83G"],"vif":["F39V","K63R"],"vpr":["Y45H"],"vpu":["A15V","F30I"]},"labels":{"aa":"RT-p51: S211N; RT-p66: S211N; gp120: S130T, -378N, -379T, -382C, T385N, I387T; gp41: L263F; p17: G121D; p2: -10T; p24: G116A; p6: S25P; rev: T37A; tat: D83G; vif: F39V, K63R; vpr: Y45H; vpu: A15V, F30I"}},"children":[{"name":"JX390612","node_attrs":{"div":0.14971999999999996,"accession":"JX390612","clade_membership":{"value":"CRF53_01B"},"country":{"value":"MY"},"date":{"value":2010.0},"Strain_name":{"value":"10MYKJ067"},"LANL_subtype":{"value":"CRF53_01B"}},"branch_attrs":{"mutations":{"nuc":["G256-","A278G","G279A","-280G","T307C","T434C","G530A","T572C","A579G","A605G","G614T","A644G","G654A","C655T","G667A","G740A","A806G","C830T","A833T","C917T","C968T","G978A","G1019A","A1079G","C1118T","C1136A","C1178T","G1232A","A1337G","C1442A","G1455A","G1472A","A1475G","G1508A","C1541T","A1642G","G1643A","C1676T","C1679T","C1680A","A1685G","G1687A","C1689A","A1691G","G1715A","T1728C","A1736G","G1778A","A1780G","T1792C","C1795T","A1838G","G1840A","G1845A","A1897G","A1907G","A1982G","G1991A","T2104C","A2113T","C2120T","T2209C","A2211C","G2222A","T2269C","G2332A","C2353T","C2356T","T2440C","A2524G","A2560G","A2579T","T2613G","G2656A","A2665G","A2710G","T2723A","C2776T","G2808A","C2831T","A2902G","C2944T","G2980A","G3001A","A3070G","G3071A","A3103G","A3124G","C3266T","G3279A","G3316A","G3438A","G3490A","A3583G","A3682C","T3755G","A3761G","C3843T","A3866G","C3892T","G3952A","T3962G","C3995A","G3997A","C4042T","G4063T","C4126T","C4162A","G4178A","T4216C","A4270G","C4318T","C4357T","A4391T","G4623A","G4642A","A4735G","T4742C","T4754G","C4820A","G4978A","G5065A","A5086G","G5128A","A5142T","G5155A","A5269G","T5292C","A5462T","G5599-","T5600-","A5601-","T5602C","T5606A","T5617C","G5652A","T5659A","C5687G","G5699A","G5734A","G5739A","C5802T","C5866T","T5878C","G5915C","T5917A","T5992C","A6008G","C6023T","A6030G","G6085T","T6115C","G6133A","T6148C","A6159T","A6167C","A6168C","T6169C","-6170A","-6171A","-6172T","A6173G","-6174T","-6175T","A6177C","A6182T","A6188C","C6189T","C6196G","T6199A","G6201A","C6202A","-6203G","-6204G","-6205C","A6206G","-6217G","G6227-","A6228-","T6252C","G6253A","C6263A","A6275G","A6281C","T6285C","T6331C","A6336G","T6340G","T6343C","T6364C","T6382G","A6388G","G6547A","G6572A","G6577T","G6588A","G6605A","A6609G","C6618A","T6637C","A6639G","T6655G","C6660T","C6673T","A6686-","G6687-","T6688-","A6689-","T6690-","A6691-","A6692G","C6693G","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","A6718G","A6734G","T6735A","G6743A","A6752C","G6764A","A6765C","A6767G","G6773A","A6791G","C6792T","A6797G","A6798G","A6799G","A6809G","A6812G","G6821A","C6843G","A6844C","T6849C","C6854A","C6885T","A6886G","T6888C","A6935G","A6948G","C6951A","-6956A","-6957C","-6958A","-6960T","-6962A","-6963A","-6964G","-6991C","-6994G","-6996G","-7001G","T7003G","C7012T","A7027G","G7055A","T7059C","A7060G","A7095T","T7107A","A7111G","A7112G","A7152T","A7154G","A7155G","G7160C","A7163C","G7168A","A7190G","G7212A","T7217C","C7238G","G7269A","G7390A","A7396G","G7441A","T7444C","T7489C","A7570G","C7597T","A7721G","C7732A","A7735G","T7748C","A7755C","G7807A","A7818G","A7820T","A7862G","G7885A","T7913G","T7930G","T7932A","G7939T","G7992A","G8002A","C8033A","C8037T","C8038G","C8077T","A8092T","A8093G","C8103T","T8164C","A8188G","C8196T","G8219A","G8255A","A8273G","G8274C","C8277T","A8337T","G8354A","T8366C"],"INT":["A23V","I31V","L63V","L74I","E96D","V135I","T206S","G283D"],"RT-p51":["E6D","P9S","K39T","E43K","S162C","I173R","L210M","R238K","V326I","R395K"],"RT-p66":["E6D","P9S","K39T","E43K","S162C","I173R","L210M","R238K","V326I","R395K","R448K","E529D","S554A","I556V"],"gp120":["D21Q","N52D","H57Y","E59G","Q77H","N102I","K127R","M133T","L137I","K141E","K143Q","V144A","N161S","S162K","E240K","E241D","R245K","D251N","N252S","T255N","K262R","N267K","T269I","S278G","T280H","V288M","D294E","D297N","K300Q","E304T","I305V","G307R","T313V","K315G","K320E","E323K","T330S","I332T","Q334K","T344M","M345T","K361E","T366N","-368T","-369I","-370K","E381G","-383A","G401R","V402A","S414I","V418K","N420D","N433I","N434G","E436N","N437Q","N446D","S453N","Q462E","R472K"],"gp41":["M54L","N140D","D143E","E151A","K172R","I173L","I187V","L204V","I210N","Q212H","G230D","L244I","A245V","I264V","A267V","R277S","T298I","A306T","V318I","R324A","A325V","Q345L"],"p1":["K4R"],"p17":["I82V","E93D","V107I","S111N"],"p2":["A11S"],"p24":["M96I"],"p6":["L1I","S3N","F17L","E34G","L38S","A39V"],"pro":["K14E","G16E","N37D","I62V","E65K"],"rev":["Y28E","A31S","V52I","L64V","P77S","H82C","S106P","T114A"],"tat":["K29I","L74R","S75T","S77I"],"vif":["V13I","R19K","K50R","H56Q","D78E","R131H","R160K","K167R","R181K","N186Y","S190N"],"vpr":["E13V","I63T"],"vpu":["L18I","A27G","R31K","V43I"]},"labels":{"aa":"INT: A23V, I31V, L63V, L74I, E96D, V135I, T206S, G283D; RT-p51: E6D, P9S, K39T, E43K, S162C, I173R, L210M, R238K, V326I, R395K; RT-p66: E6D, P9S, K39T, E43K, S162C, I173R, L210M, R238K, V326I, R395K, R448K, E529D, S554A, I556V; gp120: D21Q, N52D, H57Y, E59G, Q77H, N102I, K127R, M133T, L137I, K141E, K143Q, V144A, N161S, S162K, E240K, E241D, R245K, D251N, N252S, T255N, K262R, N267K, T269I, S278G, T280H, V288M, D294E, D297N, K300Q, E304T, I305V, G307R, T313V, K315G, K320E, E323K, T330S, I332T, Q334K, T344M, M345T, K361E, T366N, -368T, -369I, -370K, E381G, -383A, G401R, V402A, S414I, V418K, N420D, N433I, N434G, E436N, N437Q, N446D, S453N, Q462E, R472K; gp41: M54L, N140D, D143E, E151A, K172R, I173L, I187V, L204V, I210N, Q212H, G230D, L244I, A245V, I264V, A267V, R277S, T298I, A306T, V318I, R324A, A325V, Q345L; p1: K4R; p17: I82V, E93D, V107I, S111N; p2: A11S; p24: M96I; p6: L1I, S3N, F17L, E34G, L38S, A39V; pro: K14E, G16E, N37D, I62V, E65K; rev: Y28E, A31S, V52I, L64V, P77S, H82C, S106P, T114A; tat: K29I, L74R, S75T, S77I; vif: V13I, R19K, K50R, H56Q, D78E, R131H, R160K, K167R, R181K, N186Y, S190N; vpr: E13V, I63T; vpu: L18I, A27G, R31K, 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E61D, Q127R, R131H, S137A, N140S, Y147F, I159V, V166T, K176E; vpr: Q3R, P37N; vpu: M1I, T2S, E5Q, F30C, Q31L, F74V"}}}]}]}]}]}]}]}]},{"name":"NODE_0000689","node_attrs":{"div":0.09856,"clade_membership":{"value":"other"}},"branch_attrs":{"mutations":{"nuc":["T851C","G1455A","G1664A","C1676T","C1679T","G1858A","A1963G","C2098A","T2199C","C2211A","A2215G","A2222G","T2299C","A2380G","G3279A","G6234A","A6336G","A7195G","A8794G"],"RT-p51":["V35T","T39K","K43E","M178I","R395K"],"RT-p66":["V35T","T39K","K43E","M178I","R395K"],"gp120":["I447M"],"gp41":["N113D","D230G"],"nef":["K151R","S188A"],"p6":["Y36P"],"tat":["S75P"]},"labels":{"aa":"RT-p51: V35T, T39K, K43E, M178I, R395K; RT-p66: V35T, T39K, K43E, M178I, R395K; gp120: I447M; gp41: N113D, D230G; nef: K151R, S188A; p6: Y36P; tat: 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A23V; RT-p51: S123D, V179T, E245Q, A272P, T369A, I382T, M403T; RT-p66: S123D, V179T, E245Q, A272P, T369A, I382T, M403T, R461K; gp120: N108-, T110-, T313V, -384D; gp41: K106R, T208I, H212Q, R221G, S239N, G293V, A325V; nef: A27T, R59E, N157T, M173I, E174D; p17: V107A, N109K, K110R; p6: G18-, E19-, T21E, P25A, -26P, K33R, L35T, P36-, P37-, N47S; p7: K7R, G8N, Q9P, K10R, R11K, I12T, -13V, L24I; pro: I15V, L19I, I93L; rev: S31A, K39R, T62A, T68A; tat: S23N, P73S, I77S; vif: R131S; vpu: K35Q","clade":"CRF78_cpx"}},"children":[{"name":"KU161145","node_attrs":{"div":0.15943,"accession":"KU161145","clade_membership":{"value":"CRF78_cpx"},"country":{"value":"CN"},"date":{"value":2013.0},"Strain_name":{"value":"YNTC88"},"LANL_subtype":{"value":"CRF78_cpx"}},"branch_attrs":{"mutations":{"nuc":["A412G","G424A","C471A","A503G","G542A","A562G","G607A","C626T","-655A","A656G","A664G","A699G","T773C","T774A","A776C","G810A","C871G","A881G","T902C","C922G","G978A","A1142G","G1268A","C1280T","G1302A","T1316C","T1329G","G1388A","T1422C","G1424A","C1446A","A1448C","C1449A","A1450G","T1451G","G1452-","C1453-","A1454-","A1455-","T1457-","-1458A","-1459A","-1460T","C1491T","A1500C","C1535T","A1643G","T1681C","A1709G","C1788A","A1804G","T1828C","A1832T","A1839G","A1857G","G1963A","G1969A","T2035C","A2286G","C2335T","C2353T","G2459A","C2584T","C2596T","A2612T","A2615C","A2665G","T2672C","G2683A","C2694T","T2719C","T2737G","C2806T","A2827T","C2857T","G2951A","C3013T","C3056T","G3094A","A3115G","A3164C","C3201T","A3224T","C3225T","A3274G","T3358C","G3398A","T3496C","G3538A","T3544C","T3551C","T3559C","C3628T","G3685A","T3778C","T3811C","A3813G","G3925A","A3985G","G3989A","A4087G","A4130C","G4131C","T4135C","A4222T","A4254G","A4306G","A4407G","T4477C","C4501T","C4724T","C4761A","G4769A","A4774C","A4790C","G4805A","C4826T","A4845G","T4940C","A4977G","G4978A","A4988C","A4994T","G5036A","C5041T","C5047T","A5057G","T5062G","G5065A","A5112G","T5147C","G5225A","G5226A","A5246G","T5254C","A5282C","T5293G","G5312A","C5351A","G5385A","C5397T","C5438A","C5454T","T5467G","G5468T","A5557G","G5561A","A5599T","A5611T","G5620C","G5668A","G5699A","A5781G","G5824A","A5848G","G5907A","T5917G","G5972A","C6026A","C6052T","G6076T","G6092A","T6142C","C6148T","A6164G","C6166T","A6168C","-6170T","-6172C","-6174T","A6185G","A6186T","A6188G","A6189G","A6194G","-6198G","-6201C","-6202A","-6204T","-6207G","T6210A","-6211T","A6212T","-6216C","-6217A","-6220T","A6221G","-6222A","G6224-","G6227-","A6228-","A6232G","T6242A","A6262C","C6263A","G6277A","C6278A","T6287C","T6289G","G6304T","G6323A","T6325C","A6326C","T6328G","A6330G","A6333G","A6338G","-6340A","T6347C","T6355C","T6358C","T6385C","C6441T","T6466G","A6508G","G6532A","C6559A","A6595G","G6628A","A6638G","C6652T","C6692T","A6693C","A6733G","A6751G","A6785G","T6787C","G6788A","C6792T","T6794C","G6806A","C6807A","T6808A","A6810G","C6824T","C6850A","T6863G","T6888C","A6900C","A6947G","G6948A","C6951G","G6954A","-6955T","-6956T","-6957A","-6958T","-6959A","-6960A","-6961T","T7014G","A7036G","G7054A","T7078C","A7085G","T7090G","A7095G","A7096G","T7114C","A7152C","A7155C","A7157G","A7158C","T7159A","A7160G","A7163G","G7182C","C7238G","G7269A","G7276A","G7289C","A7348C","G7390A","A7399G","T7403C","C7463A","A7533G","A7570G","C7590A","T7624C","T7625A","A7626T","T7627A","G7640A","C7645T","A7689G","C7691T","A7693C","G7702T","A7703C","A7705G","G7712A","A7713T","G7720A","A7721G","A7722G","A7734G","G7735A","T7747G","A7753G","T7774C","A7816C","A7880G","T7919C","A7931T","C7932T","A7935T","T7936C","C7960A","A8023G","T8047C","G8050T","T8064G","A8069C","G8070T","G8079T","C8106T","T8171G","T8172C","G8181T","T8209C","C8213G","A8222G","C8223T","G8276A","T8279G","C8294A","G8304C","A8323C","G8329A","G8349A","A8367T","C8369G","A8370C","T8371C","A8372T","G8373C","A8386G","G8387A","A8397C","G8398C","A8400C","T8401C","A8402T","A8403C","G8404C","A8407C","T8411G","C8416G","C8422G","G8430T","T8431C","G8433C","C8437A","A8438T","G8439C","G8448C","C8451G","A8457G","A8458T","A8461C","G8466A","G8469A","A8474G","A8475-","G8476-","T8477-","A8478-","G8479-","T8480-","T8485A","G8486T","-8487G","-8488C","-8489T","-8490A","-8491A","-8492T","A8494C","A8497C","T8498C","C8500G","T8501G","G8506C","T8507A","G8508A","T8509C","T8511C","C8514T","G8516A","G8518A","C8521A","A8522T","C8523G","A8525G","G8528A","G8534C","G8537T","A8540C","C8543G","A8553C","G8554C","G8561A","T8563C","T8567G","T8569C","A8570T","A8571T","G8572T","A8577G","T8578G","A8584T","A8586G","G8588T","G8590T","T8597C","A8599T","T8603C","G8605A","T8608A","T8613G","T8614G","A8615G","A8616G","A8617G","G8619C","A8621G","A8622G","G8624T","G8634T","T8636C","G8638C","G8639C","A8656T","A8657C","A8658C","G8659T","C8661G","A8663T","T8668G","T8679A","A8686G","C8688T","A8689T","T8690C","C8692T","A8693C","A8695C","A8696T","T8701G","T8711C","A8716C","A8719G","A8724-","C8725-","A8726-","C8727-","C8728-","A8729-","G8730-","G8731-","G8732-","C8733-","C8734-","A8735-"],"INT":["E13G","M50I","V72I","S119P","K160R","K211R"],"RT-p51":["K64R","E122K","I173L","K174Q","T200I","F214L","A286T","P321S","K357Q","A369V","T377L","I393M","V435I"],"RT-p66":["K64R","E122K","I173L","K174Q","T200I","F214L","A286T","P321S","K357Q","A369V","T377L","I393M","V435I"],"gp120":["R18K","D21E","V40I","L58M","E74D","V80I","V126M","S130T","E136D","L137I","Q142K","Y145Q","K150N","D157N","N158Q","N159S","N160S","S162E","A196V","N204K","K262E","H280S","N311D","E312K","A318K","E319G","H324Y","N327-","S337A","M345T","N34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E13G, M50I, V72I, S119P, K160R, K211R; RT-p51: K64R, E122K, I173L, K174Q, T200I, F214L, A286T, P321S, K357Q, A369V, T377L, I393M, V435I; RT-p66: K64R, E122K, I173L, K174Q, T200I, F214L, A286T, P321S, K357Q, A369V, T377L, I393M, V435I; gp120: R18K, D21E, V40I, L58M, E74D, V80I, V126M, S130T, E136D, L137I, Q142K, Y145Q, K150N, D157N, N158Q, N159S, N160S, S162E, A196V, N204K, K262E, H280S, N311D, E312K, A318K, E319G, H324Y, N327-, S337A, M345T, N349T, S365D, T366S, -367Y, -368Y, -369N, I387R, I411V, S412R, N414R, -433T, N434T, N435A, T436D, N437S, G443A, Q462E, R472K, E479Q; gp41: K77R, A96D, Y108I, D113N, N129S, Q130Y, E133D, I134L, E137I, N140G, K144R, D148E, I193V, F206L, T210F, H211L, L254R, S256L, R259L, A268V, R277S, L290A, L304V, T307V, V325I, W326G, H331N, R334T, L340F; nef: G3S, S9W, I10P, V11L, Q15R, R19P, I20P, R21-, Q22-, T23-, P24-, A26P, E28P, G29R, V30A, G31R, A32E, V33G, Q35R, D38S, K39Q, A42T, V43I, S45-, S46-, M48N, N49A, -50N, -51T, N52T, A53G, C55S, V56T, W57R, A60D, Q61E, E64D, E65D, R71P, V74A, L76P, R77L, M79G, Y81F, K82D, G83V, D86V, S88N, F89Y, L91G, K92G, E93Q, K94D, D98Y, G99A, K105I, R106L, Q107D, I109S, W113R, Y115C, H116F, T117I, Q118P, F120C, Q125P, N126S, T128G, P129I, G130R; p17: K26R, R30K, L46I, K76R, R91K, A107E, T122A; p2: Q8N, N9R, -10N; p24: L15I, V27I, A47G, A64G, V83I, V191I, S200A; p6: L1P, K42R, L50S; p7: P9S, T12P; pro: T12S, K14R, K20R; rev: V16I, Y28F, S30P, I59V, S67P, A68S, Q74P, V108G; tat: A21D, C31V, L36I, S61G, S62N, P75S, I76S, P84Q; vif: L59I, K63T, I87V, S131D, E134D, A152V, T154I, I159R, R160K, K176E; vpr: Q3R, Y15H, G41N, N48D, I60L, I63M, V70I, G94S; vpu: T2S, E5Q, V21I, R31K, D73N, 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I33F"}}},{"name":"CRF79_0107_NODE_0000001","node_attrs":{"div":0.17160999999999998,"clade_membership":{"value":"CRF79_0107"}},"branch_attrs":{"mutations":{"nuc":["T570C","C688T","C1453T","A1486G","G1489C","A1500-","T1501-","T1502-","-1504T","-1505T","G1508A","A1718G","A2007G","T2499C","C2694T","T2735C","G3473A","G3869A","G4060A","G4870A","A5357G","T5515C","A5702G","C5984T","A6192G","A6219G","A6232G","C6238T","T6331C","C6499T","A6520G","G6605A","G6631T","A6669G","A6779G","C6850A","A6854G","-6974A","-6976T","-6978A","A7108G","T7153G","A7154T","A7268G","A7373G","C7392T","A7477G","A7574C","G7668A","C8051A","G8528A"],"INT":["V32I"],"RT-p51":["I135T","T200I","F214L"],"RT-p66":["I135T","T200I","F214L","D460N"],"gp120":["H44Y","D251N","D272G","T385-","R472E"],"gp41":["A30V","I91L","R122K","D133K"],"p17":["Y79H","A107E","A118V"],"p2":["-10V"],"p7":["I12-"],"pro":["K70R"],"tat":["Y47H"],"vif":["I31V","S95N"],"vpu":["K32R"]},"labels":{"aa":"INT: V32I; RT-p51: I135T, T200I, F214L; RT-p66: I135T, 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K32R"}},"children":[{"name":"KY216146","node_attrs":{"div":0.18683,"accession":"KY216146","clade_membership":{"value":"CRF79_0107"},"country":{"value":"CN"},"date":{"value":2015.0},"Strain_name":{"value":"SX15DT013"},"LANL_subtype":{"value":"CRF79_0107"}},"branch_attrs":{"mutations":{"nuc":["T200C","T201C","G279A","-280G","A303T","-304T","G354A","A410G","G665A","A685C","A692C","T979C","C1115A","T1334A","T1335C","A1359T","T1409C","A1719G","A1738G","C1783T","A1921G","A1998G","C2127A","A2254G","A2400G","A2422G","G2566A","G2580A","T2613C","C2665A","T2770C","G2881A","A3136G","A3637C","A3676G","A3761G","A3768G","G3770A","T3793C","A3883C","T3976C","A4694C","G4802A","A4838G","G4976A","C5004A","A5045G","G5048A","G5066A","A5112C","T5237C","G5566A","A5567G","G5619A","A5644G","C5802T","A5864G","C5866A","T5917G","A5962G","A5983C","C6023T","C6026T","G6029A","A6030C","A6044G","C6067A","G6076T","A6158C","C6160T","G6167A","G6195A","-6211G","A6216C","G6217A","T6222G","G6223-","C6224-","A6260G","C6317G","A6325C","T6328G","T6395A","T6427C","T6430C","C6488A","A6730G","A6742G","C6790A","G6807C","C6819A","A6848C","T6857G","C6888T","A6889G","A6926G","G6935A","T6949G","A6954G","C6955G","A6956G","-6957C","-6969A","T6970A","A6971T","-6972T","-6973C","-6975T","-6977T","-6979A","-6980G","-6981G","-6982A","-6983T","-6984A","-6985A","A6987T","T6988C","-6991C","T6994-","T7003-","C7008A","A7026G","G7057A","A7144G","T7150C","A7151G","A7152G","A7157G","A7163C","C7164A","C7170T","G7234A","A7517C","T7555G","A7617C","A7629C","G7640A","A7644G","T7647C","A7655T","C7690A","A7701G","T7713C","G7729T","A7771T","T7959C","C8011A","A8035T","A8098G","G8159A","A8216G","C8451T","G8554A","T8584A","A8604G","A8656G","C8747T","A8780G","A8793G","G8796A","A8815C","G8834A","A8947T","G9006C"],"RT-p51":["T11K","K102R","C162Y","I173T"],"RT-p66":["T11K","K102R","C162Y","I173T","E514D","I556V","K558R","V559I"],"gp120":["N4E","D21E","L57F","E59T","N64D","N71K","E74D","N102H","D105N","N107S","S110G","-118S","-119T","I136V","Q155E","N158K","S181T","R212S","D312E","S318T","A322E","K332Q","T334A","S335A","T345M","N358D","G361S","S365R","K368R","-370G","-385N","K391R","K404Q","N433G","N435D","T437Q","T439I"],"gp41":["I72L","I84M","N105T","N109T","D113N","N114S","M115T","M118L","D129E","K133R","V137A","Q142H","K156N","N166K","G286R","N305D"],"nef":["G3S","E64D","R71K","F81Y","S88G","K105R","R151G","E152K","E158A","Y202F"],"p17":["V7I","Q117P"],"p2":["H6Q"],"p24":["I83T","D128E","T210S"],"p6":["N14D","E19-","T21G","S23T","P24S","-26L","H35L","L38P","V39S"],"pro":["Y67C"],"rev":["T18A","L55I","I63F","S84G","G104E"],"tat":["D64S","S84P"],"vif":["K36N","K176Q"],"vpr":["Q3P","Y45H"],"vpu":["I13V","F30I"]},"labels":{"aa":"RT-p51: T11K, K102R, C162Y, I173T; RT-p66: T11K, K102R, C162Y, I173T, E514D, I556V, K558R, V559I; gp120: N4E, D21E, L57F, E59T, N64D, N71K, E74D, N102H, D105N, N107S, S110G, -118S, -119T, I136V, Q155E, N158K, S181T, R212S, D312E, S318T, A322E, K332Q, T334A, S335A, T345M, N358D, G361S, S365R, K368R, -370G, -385N, K391R, K404Q, N433G, N435D, T437Q, T439I; gp41: I72L, I84M, N105T, N109T, D113N, N114S, M115T, M118L, D129E, K133R, V137A, Q142H, K156N, N166K, G286R, N305D; nef: G3S, E64D, R71K, F81Y, S88G, K105R, R151G, E152K, E158A, Y202F; p17: V7I, Q117P; p2: H6Q; p24: I83T, D128E, T210S; p6: N14D, E19-, T21G, S23T, P24S, -26L, H35L, L38P, V39S; pro: Y67C; rev: T18A, L55I, I63F, S84G, G104E; tat: D64S, S84P; vif: K36N, K176Q; vpr: Q3P, Y45H; vpu: I13V, F30I"}}},{"name":"KY216147","node_attrs":{"div":0.18667999999999998,"accession":"KY216147","clade_membership":{"value":"CRF79_0107"},"country":{"value":"CN"},"date":{"value":2015.0},"Strain_name":{"value":"SX15JC06"},"LANL_subtype":{"value":"CRF79_0107"}},"branch_attrs":{"mutations":{"nuc":["G310A","G425A","T494C","T506C","G579A","G581A","G761A","G803A","C884T","T1117C","C1211T","A1253G","A1442C","A1619G","G1646C","A1700G","C1721T","G1727A","C1755T","G1760A","C1783A","C1792T","A2012G","G2219A","G2398A","A2403G","C2521T","G2764A","A2884G","A2995G","T3045C","A3094G","A3249C","T3399C","A3430T","G3435A","G3448A","C3628T","G3816A","T3850A","A3907G","G3997A","A4686G","G4727A","C4992T","A5061C","A5065G","T5102C","T5147C","A5154C","G5236A","C5239T","A5246T","A5278G","T5286C","T5292C","C5425A","C5599A","A5603-","C5692G","A5695T","A5745C","C5826T","G5845A","A5848G","A5907G","A6061G","G6121A","A6137G","G6174A","G6189A","C6190T","G6201A","T6210G","-6211T","T6213C","A6214C","A6215T","G6217T","C6220G","-6225A","-6226G","C6241T","A6251G","A6327T","T6345G","G6397A","A6425G","C6441T","T6454C","T6460C","G6465A","G6489A","A6584G","C6612T","T6676C","T6778A","C6790T","A6797C","A6798T","T6802G","T6808C","C6829T","C6830A","C6831G","A6832C","A6834G","T6835C","-6836G","-6837C","-6838T","A6842G","C6843A","A6845C","C6855A","A6947T","G6948A","-6957A","T6958G","A6960C","G6962A","G6963A","A6965G","C6966A","A6967T","T6968A","-6969G","-6972G","-6973G","-6975C","-6977A","-6979T","T6986A","A6990C","-6991A","-6992G","-6993C","-6995G","-6996A","-6997G","-6998G","-6999A","-7000T","-7001A","-7002C","-7004A","-7005A","C7006T","A7007T","C7009G","A7036G","A7065G","T7114C","A7149C","T7150A","A7161G","G7199A","C7684T","A7689C","A7801T","C7938A","T8112G","G8133A","G8241A","A8263G","A8349G","G8388A","A8469G","T8505A","G8510A","C8568T","A8693G","C8715G","A8717C","A8746T","G8794A","A8844G","G8888A","G8914A","T8923G","G9019T","C9023T","T9072C","T9074G","T9078C","C9108-","-9109T"],"INT":["R14K","D25E"],"RT-p51":["E42K","K103R","V317A","K385T","V435A"],"RT-p66":["E42K","K103R","V317A","K385T","V435A","S447N"],"gp120":["K18R","T95A","N117S","-118T","-119Y","-120G","T133A","D157N","N158-","N159-","S160-","S161-","E162S","I164R","T191A","A196V","R204K","R212H","I244V","A253V","N308K","N315L","N316K","P326S","N327S","-328A","T330E","I331L","T334E","S365Y","-370S","-372V","K404R","N432T","N433K","N436S","D449N"],"gp41":["N109K","D129A","T212N","P219L","V270G","R277N","G313E"],"nef":["V16I","I43V","C55S","Q125D","Y135F","R151K","M168V","M182I","R191H","M194R"],"p17":["V82I"],"p24":["I129T"],"p6":["P25L"],"pro":["I72V"],"rev":["D30E","S88R"],"tat":["Q17K","P77T"],"vif":["K34E","P136S","N140H","I159L","K160R","N190H"],"vpr":["F15L","E17A","N48Y","I61T","M63T"],"vpu":["Q29E","D80N","N81D"]},"labels":{"aa":"INT: 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E63D"}}},{"name":"DQ354120","node_attrs":{"div":0.16099999999999998,"accession":"DQ354120","clade_membership":{"value":"CRF15_01B"},"country":{"value":"TH"},"date":{"value":1996.0},"Strain_name":{"value":"M169"},"LANL_subtype":{"value":"CRF15_01B"}},"branch_attrs":{"mutations":{"nuc":["G361C","A513C","A557G","C583T","A619G","A647G","G696A","G803A","G821A","T827C","T858C","A944T","A968C","C1040T","G1090A","G1139A","A1176G","T1182C","A1359T","A1412G","A1442C","A1448G","G1452A","G1586A","C1610T","C1615A","A1656C","A1691G","C1741T","A1742G","C1753T","T1756C","T1792C","T2035C","G2215A","G2222A","T2425C","C2485T","A2592G","G2682A","A2710G","G2909C","A2915G","C2968A","G2984A","A2986G","A3007T","C3129A","A3218G","C3285T","T3358C","A3502C","T3517C","G3538A","A3866G","A3868G","C4076A","G4078A","T4129G","T4135C","A4333G","A4492C","G4616A","T4667C","G4677A","T4702C","C4728A","T4776A","C4826T","A4863C","G4870A","T4883C","C4937A","C5149T","G5179A","A5247C","C5306T","G5382C","C5482T","T5636C","C5658T","T5659G","T5660C","T5688A","A5689T","T5695G","G5711A","A5760G","T5851C","T5878C","G5963A","T5964C","T6151C","A6173G","-6175A","A6180C","A6192G","-6196T","-6200A","-6201C","-6202T","-6204C","-6207G","-6208T","T6210G","-6211T","A6212C","T6213C","A6214G","A6215C","G6222A","G6224A","A6248G","T6250C","G6261C","A6265G","A6268T","A6332G","A6354G","C6412A","G6430T","C6446A","A6465G","T6541C","C6607T","G6617A","A6639T","A6695C","C6708A","C6758T","C6767A","T6772C","A6803G","G6806A","-6835C","A6859C","-6957A","A6960C","A6965G","-6986A","A6989T","C7014G","G7040A","A7095T","C7156G","A7160-","A7161-","C7162-","G7182C","A7269G","G7291A","G7440A","C7486T","C7489T","T7622A","T7626A","G7627T","G7633C","G7640A","G7677A","T7775C","G7790A","A7791G","A7796T","A7818G","G7835A","A7847G","C7926-","C7927-","C7928-","C7929-","T7930-","A7935C","C7937A","A7938C","G7939C","C7951A","G8017C","A8050G","G8052A","C8080A","G8137T","A8143G","A8248G","G8255A","A8260T","A8282G","G8335A","C8336G","G8388A","A8407G","G8421A","T8505A","T8582A","T8584A","A8617G","A8657G","A8717C","A8917C","T8923G","C8928A"],"INT":["I31V","L101I","V281M"],"RT-p51":["E43K","K166R","G196E","A272P","I274V","D291E","E297K","P345Q","I375V","T397I"],"RT-p66":["E43K","K166R","G196E","A272P","I274V","D291E","E297K","P345Q","I375V","T397I"],"gp120":["V37T","-107E","N109A","T110N","N113S","-116P","-117L","-123E","G124R","N132D","S136T","I137M","K138N","N160D","N167S","L198I","K204R","V255I","E262V","I281L","P285Q","H302Y","L305I","K315R","I317V","Q335H","-368N","N369G","-374T","-375S","-376A","-377W","-379Y","-381T","-382E","-383N","T387R","V396I","Q414L","N434T","T437-","G443A","K472R"],"gp41":["R46K","M54L","S107T","L108H","N109D","E110D","D113N","S125D","D163S","T165S","K172R","V178I","I182V","T208I","P209-","S210-","H211P","Q212T","Q213H","R250Q","V318I","R327G","L345V"],"nef":["V16I","K21R","Q22R","A27T","C55S","Q61H","F81Y","K92R","Q125H","I173L","K192T","I194R"],"p1":["N9H"],"p17":["S9T","I60L","A83V","K95R","I104M","G121S"],"p2":["A7H","Q8T"],"p24":["E71D","S120N","S149G","T210S"],"p6":["T21M","L38S"],"p7":["T50N"],"rev":["E57Q","T68A","L78I","V97L","R99G"],"tat":["E2D","P73S","N80G","P81N"],"vif":["F39S","H48N","L64I","N93Q","S95N","D117E","T188I"],"vpr":["N48T","A93P"],"vpu":["V10A","L18A","I28L","Y30V","R35K"]},"labels":{"aa":"INT: 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I28L, Y30V, R35K"}}}]},{"name":"CRF15_01B_NODE_0000006","node_attrs":{"div":0.13968999999999998,"clade_membership":{"value":"CRF15_01B"}},"branch_attrs":{"mutations":{"nuc":["G425A","G428A","G821A","-1752T","C1783A","T1986C","C2353T","A2566G","A2808G","G3001A","A4864G","C5250A","C5653A","C5707T","G5711A","C5866A","T5878C","T5884C","C6025A","-6175G","-6211G","A6311G","G6806A","A7005G","A7032G","T7579C","A7885G","T8182C","G8349A","G8404A","T8505A","G8558A","A8981G"],"RT-p51":["K238R"],"RT-p66":["K238R"],"gp120":["M126I","I153V","-371T","K393R","N434T"],"gp41":["M54L","L340F"],"nef":["G3S"],"p17":["M31L"],"p2":["Q6H"],"p6":["P25L","P35H"],"pro":["L63P"],"rev":["H82S","S112P"],"vpr":["T49N"],"vpu":["L16I","R35K"]},"labels":{"aa":"RT-p51: K238R; RT-p66: K238R; gp120: M126I, I153V, -371T, K393R, N434T; gp41: M54L, L340F; nef: G3S; p17: M31L; p2: Q6H; p6: P25L, P35H; pro: L63P; rev: H82S, S112P; vpr: T49N; vpu: L16I, 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V31I, V32I, A124G, K160R, T218S; RT-p51: S123D, I135R, A286T, D291E, I292V, P294A, E297T, T377L, S379C; RT-p66: S123D, I135R, A286T, D291E, I292V, P294A, E297T, T377L, S379C, R461K, H483Y, E514D, V517I; gp120: D4N, A37M, N102D, N108K, T110G, -113T, -114D, -123T, -124D, M133V, R138N, K150R, Q155H, N159S, N160S, S161E, S162K, D251N, I279M, Q287R, G307Q, K309N, N311Y, K315R, A318T, K322E, N327-, I331V, I332V, N349T, K361N, S365N, -367C, -368L, -369N, -370E, -371T, -372K, -373E, -376C, -377N, -379I, -381K, R391K, I396V, M398L, T414R, N432I, N435A, I463L, K474R; gp41: M54L, A96N, I118V, E133A, N160S, D163S, M176I, R221G, L265S, A267V, A268T, W285C, D305N, V321I, A322V, A325T; nef: S9M, V10A, V33A, K39R, A50E, D54A, L58V; p1: N9H; p17: M31L, L34I, A54T, L75V, T84V, K103R; p24: I2L, Q4R, A6V, V83I, M96L, S149G, T178S; p6: T8S, I21M, L25M, K33R, P38L; pro: L10I; rev: R14A, I18T, K39R, I55L, T62S, S86N, V104L; tat: N12K, T19A, K24N, K29R, C31S, L36I, Q60R, S61R, N67D, K71E; vif: Y30H, H80Q, R92K, I93T, K122E, I124T, V128I, R131S; vpr: N28S, I61M, I84L, P85R; vpu: L4F, E29Q, F30I, R31K, R35Q, V43I"}}},{"name":"CRF52_01B_NODE_0000001","node_attrs":{"div":0.13178999999999996,"clade_membership":{"value":"CRF52_01B"}},"branch_attrs":{"mutations":{"nuc":["C426A","T774G","A1841G","C2485T","A2808G","G3491A","T3779C","A4650C","T4701G","A5159G","C5250A","T5636C","G5907A","T5964C","A6186T","G6323A","G6392A","-6833A","-6834A","-6974A","-6976A","G7132A","C7463A","T7843C","C7929T","T8047C","G8107A","C8112T","A8151G","-8492T"],"RT-p51":["K211R","K238R"],"RT-p66":["K211R","K238R","V466I"],"gp120":["R18K","E125-","D157N","V180I"],"gp41":["P209L","T270I","K283R"],"p24":["L15V"],"p6":["V39S"],"pro":["I15V"],"rev":["S67P","E87K"],"tat":["K29I","L74F"],"vif":["N22H","F39V"],"vpr":["T19A","T49N"],"vpu":["V10A"]},"labels":{"aa":"RT-p51: K211R, K238R; RT-p66: K211R, K238R, V466I; gp120: R18K, E125-, D157N, V180I; gp41: P209L, T270I, K283R; p24: L15V; p6: V39S; pro: I15V; rev: S67P, E87K; tat: K29I, L74F; vif: N22H, F39V; vpr: T19A, T49N; vpu: V10A"}},"children":[{"name":"DQ366664","node_attrs":{"div":0.15575999999999995,"accession":"DQ366664","clade_membership":{"value":"CRF52_01B"},"country":{"value":"MY"},"date":{"value":2003.0},"Strain_name":{"value":"03MYKL018_1"},"LANL_subtype":{"value":"CRF52_01B"}},"branch_attrs":{"mutations":{"nuc":["A303T","T357C","T571A","C583T","G585A","A605G","G614T","A647G","T655C","C669A","C672T","A674C","G706A","A716G","A975C","G1127A","C1136A","A1253G","A1350T","A1355T","T1451A","G1452C","C1453A","A1454T","A1456C","T1457A","-1458A","-1459A","-1460T","A1492C","G1493A","T1574C","A1580G","A1587C","T1616G","G1661A","A1691G","A1772G","A1781T","A1783C","A1819G","C1831T","A1857G","G1963A","T2071C","C2199T","G2350C","A2371G","T2453C","A2498G","A2510G","C2944T","A2969G","C3129A","A3136G","G3169A","G3173T","A3217G","A3292T","T3303C","T3346C","T3505A","A3521C","C3550A","G3667A","C3712T","A3836G","G3869A","C3991T","A4333G","T4656G","A4677G","A4688G","A4782G","A4860G","A4863C","T4932G","G4978A","G4982A","T5084C","A5093G","G5128A","G5131A","A5142C","C5146A","T5182C","C5222T","A5247C","T5293C","A5345G","T5356C","G5385A","A5446T","A5447C","C5482T","T5515C","A5581G","A5587G","A5611C","C5612A","G5619A","A5644G","G5699A","A5720G","G5739A","T5797-","T5798-","G5799-","G5800T","C5801T","C5802G","A5803G","A5804C","A5805C","C5806A","T5807C","T5808A","-5809C","-5810T","-5811T","C5866A","T6046C","C6067A","T6072C","T6134C","C6148T","-6170G","T6171C","-6172T","C6175A","G6179A","T6181A","A6191T","A6192C","G6194A","G6195A","C6196A","-6198C","T6199A","-6201T","-6202A","A6203G","-6205A","A6208T","A6209C","-6211A","-6213C","A6221-","A6223-","A6249G","A6266C","G6267A","A6268G","A6273G","G6284A","T6289G","T6322G","A6327G","G6336A","A6339G","-6340T","G6376A","T6446C","C6599A","C6607T","G6611A","A6649G","A6692G","C6693G","-6697G","A6703-","A6714G","A6723T","C6736A","A6759T","C6792T","C6807A","T6808G","-6835T","A6848G","T6849A","T6888C","G6889A","A6935C","A6936T","G6948A","C6951A","-6955C","-6975C","G6979A","G6980A","-6982T","T6983G","T6985A","A6987C","A6990G","C6991G","-6994G","-6995G","-6996G","-6997G","-6998T","-6999G","-7000T","-7001A","-7002A","-7003T","-7004G","-7005A","C7006A","A7057T","C7084T","A7095T","G7106A","A7138C","G7146A","T7150A","A7152G","T7156A","C7158A","A7160G","T7162C","A7164G","C7170T","A7195G","A7265T","G7269A","A7373C","T7466C","G7534A","C7597T","T7625C","A7630T","C7645G","G7655A","G7658C","A7688G","C7691A","A7703C","A7742C","G7744A","T7747G","T7774C","T7825C","A7996C","A8029T","C8038G","G8070T","T8138G","A8150C","G8255A","C8268T","C8323A","G8370-","T8371-","G8372-","A8386G","A8413G","T8440C","A8458G","A8494C","C8503A","A8540G","C8543T","G8588A","T8594C","T8603C","A8617G","C8675T","A8827G","G8846A","A8859C","T8860A","G8861A","A8874G","A8917C","A9042G","A9135G"],"INT":["T21A","V32I"],"RT-p51":["T35I","Q85H","I135V","T139A","I292V","P345Q","A360S","E399D","M403T"],"RT-p66":["T35I","Q85H","I135V","T139A","I292V","P345Q","A360S","E399D","M403T","K476Q"],"gp120":["D4E","N71K","V73A","L106A","T107K","G109K","N111I","-113S","-114K","-115T","-116I","-118N","-120T","-121D","-122E","-123V","-124R","V126-","K127-","N132S","R138Q","K140R","V144I","H145Q","N158S","N160S","S161N","L249I","A253T","T280G","I281M","Q287R","Y290F","D294E","Y302F","A318K","I332D","M345T","K361L","S365N","T366N","-367C","-374T","-376N","-377E","N378T","-379G","-381G","-382C","-383N","-384E","A402V","T414I","V418I","R428S","G431D","N432K","N433S","N434K","T436D","N437S","T439I","I447M","T471S","R472K"],"gp41":["I24L","Y108H","E109D","N114K","E119Q","N129D","Q130K","I134L","K147Q","D148E","R231S","L242F","S256L","W279G","V318I","A322V","F340L"],"nef":["V10-","E24G","V33A","K39R","N51T","K92R","N162S","M168I","M173Q","R178G","K192T"],"p17":["P66S","F79Y","A83V","E93D","I104M","V107A","Q112K","Q113Y","S124N"],"p2":["H9Q","-10H"],"p24":["T207S"],"p6":["E34D","H35P","N47S","S51L"],"p7":["Q9P","K41Q"],"pro":["K20R"],"rev":["S61C","L64V","Q74P","V97G","Q101P"],"tat":["K24S","Y47H","I69V","K71E"],"vif":["L24V","I31V","I66V","R92G","I93L","S116A","R131H","R181K","G182D","N186H","P187H"],"vpr":["E13A","H40Y","N48T","I84T","G94S"],"vpu":["T2Q","I13V","R31K","K38R","K66T"]},"labels":{"aa":"INT: 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K24S, Y47H, I69V, K71E; vif: L24V, I31V, I66V, R92G, I93L, S116A, R131H, R181K, G182D, N186H, P187H; vpr: E13A, H40Y, N48T, I84T, G94S; vpu: T2Q, I13V, R31K, K38R, K66T"}}},{"name":"DQ354113","node_attrs":{"div":0.15212999999999996,"accession":"DQ354113","clade_membership":{"value":"CRF52_01B"},"country":{"value":"TH"},"date":{"value":1996.0},"Strain_name":{"value":"M043"},"LANL_subtype":{"value":"CRF52_01B"}},"branch_attrs":{"mutations":{"nuc":["T372C","T479C","T531C","T596C","G608A","T635C","G697A","A715C","A724G","G762A","T763C","C947T","A989C","A1208G","G1232A","G1388A","G1508A","A1664G","G1670A","A1694G","G1739-","A1740-","T1741-","C1744T","C1745A","-1746A","-1747C","-1748C","T1752G","C1753T","A1754T","T1796C","A2075C","T2116G","A2127C","A2154G","A2210T","C2211T","G2380A","A2599G","A2614G","G2878A","C2910G","C2960T","G3071A","A3124G","A3151G","G3221T","A3230G","G3340A","A3474G","T3545C","C3600T","C3628T","A3637G","C3649A","A3682T","G3685A","T3778C","A3845G","A3868G","G3877A","G3878C","G3891A","C4009T","T4126C","G4145A","C4198T","G4264A","A4285G","A4384G","T4678C","C4728A","C4761A","T4772C","C4937A","G4975T","A4987G","A5005G","G5176A","C5242T","G5279A","T5293G","C5384T","G5493A","C5511T","A5548C","G5561A","T5568G","A5607T","A5611T","G5620A","A5621C","T5708A","G5711A","C5727T","G5791A","G5839A","A6164-","C6165-","C6166-","A6167-","A6168-","T6169-","T6171-","A6180C","A6185T","T6187G","-6198A","-6201A","-6202C","-6205T","A6207G","T6210G","-6211G","-6213A","-6215T","-6216T","-6217T","-6218A","-6219A","-6220C","-6222G","A6225G","T6226A","G6227-","A6228-","C6263A","T6328G","T6331C","G6333A","A6338G","-6340G","A6375G","G6481A","A6574T","A6581G","G6605A","C6612T","T6745C","A6748T","A6767G","A6806G","A6810G","-6835A","T6896G","C6951T","T6953-","G6954-","-6964C","-6965A","-6966C","-6967A","-6968T","-6969G","-6970G","-6971A","-6972C","-6973T","-6975T","A6981G","-6982A","T7018G","G7026A","T7059C","A7085G","A7095C","G7106T","A7148G","A7149C","A7154G","T7159G","A7160C","T7162A","A7249G","A7322G","A7541C","A7626T","G7640A","T7656C","G7702T","G7857A","A7885G","A7891G","T7920C","C7926T","C8005A","C8069A","C8103T","G8105A","T8215C","G8216A","A8219G","C8220T","T8221C","T8281C","C8294A","G8349A","-8373G","-8374T","-8375T","G8387T","C8406A","A8438G","A8465G","G8490A","A8536G","A8656G","G8666C","C8688A","A8793G","A8824C","T8887G","G8888A","A8892C","T8947A","C9023T","A9026G","C9129T"],"INT":["S24G","E35Q","S39N","A124T","I203M"],"RT-p51":["K11T","K20R","T39L","A272G","V326I","A376S","S379G"],"RT-p66":["K11T","K20R","T39L","A272G","V326I","A376S","S379G","N460S","A502V","E529D"],"gp120":["T104N","T110N","-113P","-114T","-115G","-116P","K127R","L137I","M156I","N158K","S162E","K174R","E240D","I243V","D251N","A253V","I305V","V313A","K319G","-326K","N328-","F348V","-376G","-377Y","-379D","R391K","I411V","V418L","N432A","N434D","N435T","T436Q"],"gp41":["M7V","K80Q","Y108F","D113N","I118A","E133D","R185K","F206S","T208I","A267V","A268T","D305N","T306V","H331N"],"nef":["G3S","-11V","R15N","A50T","D54A","E65G","K105R","E108D","H116N","K151E","N161T","M182R","K184Q","F202Y"],"p17":["T84A","G121D","K127T","Q130R"],"p24":["V11T"],"p6":["S24V"],"pro":["I93L"],"rev":["E11D","V16I","I18S","R53S","S86N"],"tat":["P3L","T58P","S62N","D64E","P73S"],"vif":["I31T","H48N","L59I","D117E","R130I","E134G","N140S"],"vpr":["A59T","I63M","I84M"],"vpu":["T2S","E5T","L34Q","R35K","D62N","V78I"]},"labels":{"aa":"INT: 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L74I, V165I, K215N, D279G, G283S; RT-p51: V8I, E44G, E169D, G196E, Q207T, T312N, Q334H, R366K, T403A; RT-p66: V8I, E44G, E169D, G196E, Q207T, T312N, Q334H, R366K, T403A, L469I, L479F, H480Q, S491P, E514D, E516A; gp120: H33Q, E34D, T35P, P57L, L58M, N66D, N102D, T104S, D105A, -109V, -111L, -112T, -113N, -114S, -115T, -116Y, -117P, -118T, -119N, -120A, -121P, -122E, -123K, -124I, K140R, K141E, Q142K, Q155E, D157E, N158G, N160S, K174R, V180M, I197M, F205V, E262S, I266V, I279V, H280S, T313K, H324K, I332K, H346L, -368P, -376G, -377N, N378E, -380I, -381T, -382G, -383S, -384G, V396I, G401E, V402T, N414H, V418A, N437T; gp41: M54L, V69I, K77R, F81L, I91T, Y108F, N113E, E119Q, N140I, D148E, A156T, D163N, T165S, N166K, F188S, D232G, R233K, V235I, H258R, L264G, I290A, A306T; nef: S8N, S9K, E63D, C163S, E174D, E176D, E197Q; p17: V7I, K18R, K26R, M61I, S66P, T67A, T81L, R91K, S124K, N125-, S126-, K127-; p2: Q6H, T8Q, N9G, -11A, -12G; p24: L15I, E71D, E79D, P123A, A204S, T210S; p6: G18E, S24P, K31I, P37-, P38-, I39-; pro: K45R, K70R; rev: K20R, Y28E, K39R, R53H, A54T, T62A, T82R, D108G, K115E; tat: A21P, P59S, S62C, L74R; vif: I9V, V31I, S39F, R41K, R67K, H80Q, N95S, D117E, S137A, K167R, N190H; vpr: A4T, N28A, E58V, I84L; vpu: T2S, V21I, K35R, R37K, K38R, V43I, R47E, D69N"}}},{"name":"CRF100_01C_NODE_0000001","node_attrs":{"div":0.14014,"clade_membership":{"value":"CRF100_01C"}},"branch_attrs":{"mutations":{"nuc":["A3120T","T7159A","G7702C","G8253C","T9097G"],"RT-p51":["Y342F"],"RT-p66":["Y342F"],"gp120":["H259Q"],"gp41":["R317T"],"nef":["I133T"],"vif":["R131H"]},"labels":{"aa":"RT-p51: Y342F; RT-p66: Y342F; gp120: H259Q; gp41: R317T; nef: I133T; vif: 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E11D, R14K, T218S; RT-p51: V8I, E36K, I173V, C280R, K311Q, T312N, R356K, R366K, K374R; RT-p66: V8I, E36K, I173V, C280R, K311Q, T312N, R356K, R366K, K374R; gp120: D21E, E34V, A37V, E59K, D79G, K89Q, D105N, -106L, -107G, -109R, -111D, M133I, K141Q, Q142K, I153L, D157E, N158S, N160S, N167K, T170A, E265K, R291K, D294A, I305V, T308A, E312K, S319D, K322R, N327-, K329G, K361N, -368R, -369R, -370N, -371E, -372S, -373I, -374T, -375D, -376D, -377S, N379K, -380N, T385-, P389T, A405T, N416S, N420D, N433T, N435T, N436G, I463L; gp41: A6T, K80R, F81L, I118V, N129T, S157N, V178A, A189T, G200E, P209L, N210T, P219L, G221R, A245L, L265S, I298T, T307S, A343S; nef: R22Q, K32Q, V70I, G83A, Y120F, K151R, V153A, D156N, N157S, G159D, N162S, E176D, S188A, E197D, Y203F; p17: K32E, V46I, V82I, E93D, I107M; p2: Q6N; p24: L15V, V83L, H84N, E98D, E128D, S146C, S149G, R154K, T178S; p6: M21I, T22-, P30Q, -32D, -33H, -34P, -35P, P38S; p7: Q9P; pro: E16A, Q61E, L63C, E65G; rev: K20R, R53S, I55L, C63F, S106P; tat: T24K, 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R41K"}}},{"name":"MH909570","node_attrs":{"div":0.16357999999999998,"accession":"MH909570","clade_membership":{"value":"CRF100_01C"},"country":{"value":"CN"},"date":{"value":2013.0},"Strain_name":{"value":"YNLC30"},"LANL_subtype":{"value":"CRF100_01C"}},"branch_attrs":{"mutations":{"nuc":["G354A","A426C","A492T","A503G","G524A","A534T","A569G","G579A","G614A","A715C","T861G","A873T","A878T","C879G","A880G","A881T","A1017C","G1022A","C1115A","G1127A","C1136T","C1137T","G1298A","C1385T","G1415A","T1421C","C1442A","G1452A","A1538G","A1657G","G1734-","A1735-","G1736-","A1740G","T1741A","C1744T","C1745G","-1746A","-1747C","-1748C","C1752T","A1771G","T1791G","A2012G","T2041C","A2149G","C2236T","G2248A","C2453T","C2499T","G2507A","T2527C","T2613C","C2714G","A2734G","A2752G","T2770C","C2890T","T2935C","C2942A","G2951A","C2960T","C3023T","A3136G","C3160A","C3222T","A3251C","C3266T","C3500T","C3541T","G3685A","C3712T","G3769A","G3787A","A3880G","T4126C","T4153C","C4210T","T4234C","G4243A","C4396T","A4528C","A4567G","G4573A","A4656C","A4696G","A4751G","G4769A","G4870A","C4937A","G4978A","A5045G","G5131A","T5237C","G5246A","A5247G","T5260C","T5355A","C5397T","G5418A","G5444A","T5451C","A5462T","A5482T","T5515C","G5556C","G5574A","A5576T","T5577A","A5581G","G5635A","T5636C","A5640G","G5699A","G5711A","C5727T","C5731T","A5805G","T5899A","A6001T","A6030T","A6094G","A6158C","G6167-","A6168-","T6169-","A6187G","A6194G","A6201C","-6202C","-6203G","G6205C","A6207C","A6208C","T6217G","G6253A","C6263A","G6280A","C6286A","C6317A","A6320C","G6327A","A6330G","G6336A","A6338G","A6443C","T6460G","A6471C","A6476G","C6477A","C6482A","A6553G","C6631A","T6641C","A6686-","G6687-","T6688-","A6689-","T6690-","A6691-","A6692G","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","C6721T","A6774G","G6821A","-6833A","-6834A","-6835T","C6861A","A6900T","A6932T","-6972G","-6973T","-6974A","-6975G","-6976G","-6977A","-6978G","G6980T","-6985A","A6986C","-6994G","-6995T","-6996A","-6997A","-6998G","-6999G","-7000C","-7001A","-7002A","-7003T","-7004G","-7005A","C7024T","C7084T","T7090A","T7102G","G7123A","C7165T","A7269G","A7322T","G7366A","A7373G","A7375G","C7544T","A7633T","G7640A","T7656C","T7681C","C7691A","A7692T","G7701A","G7717A","A7753G","A7820T","T7843C","T7913C","T7930G","C7932A","A7962G","C7984A","T8047C","G8110A","T8113G","A8128C","C8129A","C8131G","A8132C","T8167G","A8204G","G8216A","G8219A","G8239A","G8241A","C8321T","A8329G","C8369T","G8388A","T8414C","A8531C","A8643G","G8738A","G8762A","C8789T","G8794A","G8818C","A8823G","A8827C","A8837G","G8888A","C8917T","C8948T","A8969C","A8970G","A8980G","T9012C","G9016T","G9132A"],"RT-p51":["T135I","E138K","I173A","Q207E","L283I","A286T","T297A","A376V","T386P"],"RT-p66":["T135I","E138K","I173A","Q207E","L283I","A286T","T297A","A376V","T386P"],"gp120":["E59V","N102H","N108-","T110-","M133I","L137I","Q155K","I156L","N159R","S161N","K162N","V180I","I197L","D202E","N206T","T208E","P210T","S263P","S278G","E307G","E323K","P336H","N349I","T360S","-384D","S412R","N416K","V432D","N435T","K472R"],"gp41":["M7L","I24V","M54L","Y108F","E110D","I118T","Q130I","G133D","I173L","E220G","A245V","I301V","D305N","A306T","G313E"],"nef":["V16I","T56A","E63D","I101V","G159A","N161D","N162T","M182I","T192I"],"p1":["N9S"],"p17":["V7I","M31L","T53S","T67S","V82I","K127T"],"p24":["S44A","T48S","Q50G","M96L"],"p6":["K31-","P38A"],"pro":["I72V"],"rev":["R14T","I21Y","Y28E","K39R","S67P","D88N","C89G","T94Q","Q95G","S107A"],"tat":["S23N","K29I","I36L","Y47H","Q60H","N67I","I69V","L74R","K85E"],"vif":["I24L","K37R","D117E","G182D","N190H"],"vpr":["Y45H","D48S"],"vpu":["V10T"]},"labels":{"aa":"RT-p51: 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K20R, D35E, L63V, I93L; rev: E6D, T8A, F21L, T25S, R53H, A54T, E57D, L83I, C85S; tat: I19R, A21E, Y47H, K53Q, H54R, I67A, L69I, N71K, G79R, E85K; vif: M29I, Y30H, E37K, S137A, K176E, G182D, T188I, H192Q; vpr: Q3R, L20I, G41S, I46V; vpu: T2N, P3S, L18A, R31M, -68L, V69-, 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S39T; RT-p51: V142I, A376S; RT-p66: V142I, A376S, R463K; gp120: D4E, -113N, K140R, K141Q, Y145Q, K201N, D202E, S308N, G361L, T385-, V432T; gp41: Q80R, D113G, E119Q, S157N, G226D, L288I; nef: R21K, N49D, D156E, N161D, N162R, I168M; p17: M104L, K109S; p2: A10T; p24: A78V; pro: K20I, K70R; rev: P72S, L73F, R80G, S106Y; vpr: 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V31I, V135I, K215T, D279E; RT-p51: R20K, G51R, G190R, G196R, G231R, V276I, G316R, Q367P; RT-p66: R20K, G51R, G190R, G196R, G231R, V276I, G316R, Q367P; gp120: E59G, N107-, -109D, T112A, -114I, -115S, V126I, M133V, T134D, D139G, Q145R, A146T, K150T, N158K, N159S, N160D, S161T, K212R, K224M, E265A, H302Y, N308E, N311K, Q315H, E322Q, I332R, A334E, P341L, T359G, S360T, L361F, S365G, -368N, -373S, -374T, -375G, -376T, -377H, -379K, -381E, -382N, T416Q, K418N, N420S, N435T, T436E, N437S; gp41: I135L, N160T, K172R, S210T, R214G, D232N, C256S, G286W, L290I, L304F, V311I; nef: T23A, M48I, V56A, E64D, Y81F, H116N, I133T, Y135F, Q198L; p17: I60L, V82I, V83A; p24: E71D, I83M, G89R, G137R, R203K, P207T, G208E, R229K; p6: G16R, G18R, K33E, S51P; p7: G40R; pro: V11A, I64M, G68R; rev: F28Y, E32G, R50K, A54T, I55L, R58W, L74Q, G104V, A108D; tat: S16-, I19-, Y47H, K63E; vif: R4K, I9S, I98V, S165C; vpr: N28I, D48E, I63T; vpu: L16I, C30Y, R31K, R41K, R47G"}}},{"name":"MT624755","node_attrs":{"div":0.18392999999999998,"accession":"MT624755","clade_membership":{"value":"CRF111_01C"},"country":{"value":"CN"},"date":{"value":2016.0},"Strain_name":{"value":"16YN732"},"LANL_subtype":{"value":"CRF111_01C"}},"branch_attrs":{"mutations":{"nuc":["A265C","T396C","A417C","A543G","A674C","A675-","A676-","G677-","C679-","A680-","A776T","A1002T","A1134G","G1298A","G1313A","A1346G","G1354C","T1358C","A1463G","G1474A","G1661A","A1754G","A1900G","T2146C","A2612G","T2613A","A2618C","C2749T","G2932A","A2937G","C3180G","A3214G","G3398A","C3449A","A3454G","C3688T","G3952A","C4234T","C4288T","A4787G","G4978A","A5059C","G5065A","C5239T","A5240G","C5438A","G5565A","A5575T","T5686C","A5737G","A6001C","A6019G","A6024G","G6085T","G6088A","G6092A","A6112G","A6158C","T6160G","T6170G","T6171C","G6172T","A6177G","T6181G","A6192G","A6194T","A6203T","A6204C","T6213G","C6222A","A6323C","A6324C","T6325A","A6333G","G6425A","T6446A","A6573G","A6583G","G6626A","A6639G","A6649T","A6668G","A6669G","A6715G","G6773A","A6774G","A6800G","T6876C","G6936T","C6951T","T6953G","A6954G","G6962A","A6987-","T6991C","-6994T","-6995G","-6996G","-6997T","-6998A","-6999C","-7000A","-7001G","-7002G","-7003A","A7007-","C7009-","T7114C","T7144G","T7153C","A7155C","T7156C","T7159C","A7162C","A7164C","G7269A","T7321C","C7597T","A7630T","C7651T","T7675C","A7717G","A7799C","G7873A","T7919C","G8017C","A8018G","C8020G","G8137A","A8222G","A8228G","G8274C","A8288C","T8334G","C8460T","T8485G","-8488C","-8489A","A8496-","A8497-","T8498-","G8499-","C8500-","T8501-","G8502-","A8503-","T8504-","A8505-","G8506-","T8507-","G8508-","C8510-","T8511-","G8512-","G8513-","T8514-","T8515-","G8516-","A8517C","G8518A","C8521A","A8522G","C8523G","G8526A","G8528T","T8640C","A8652G","C8661A","G8868A","A8873G","T9019C","T9040A","A9042-"],"RT-p51":["I173E","N175H","K281R","T362S","V435M"],"RT-p66":["I173E","N175H","K281R","T362S","V435M","L452I"],"gp120":["H57R","Q77H","V80I","N102Q","N107S","-109A","T110S","N111S","-114S","-115T","-116I","-117G","-118N","-119I","-123K","-124D","N157P","N160S","S162N","A191T","L198I","E240G","I243M","V258I","Q262R","E265D","N272G","E307R","N316D","T366I","Y367G","-369N","-370S","-371T","-372Y","-373N","-374G","-375T","-376G","-377D","N378-","T380-","T432N","N433D","N437T","R472K"],"gp41":["E109D","N166H","F206L","N239E","T307V","I309V","R324T","I329L","L344W"],"nef":["H40Y","M48R","D49A","N52-","A53-","D54-","S55-","V56-","W57-","L58-","R59-","A60-","K104E","Q107K","E176K"],"p17":["K28Q","T70A","K114-","A115-"],"p2":["I13M"],"p24":["L15F","I91F","I135V","G208A"],"p7":["R3K"],"pro":["I93V"],"rev":["R17K","K20N","E57R","R58G","D86N","V97M"],"tat":["A21D","I67F"],"vif":["M29I","R131H","K158T","R160K"],"vpr":["I46V"],"vpu":["F27L","K44E"]},"labels":{"aa":"RT-p51: 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K44E"}}}]}]},{"name":"CRF111_01C_NODE_0000003","node_attrs":{"div":0.16457,"clade_membership":{"value":"CRF111_01C"}},"branch_attrs":{"mutations":{"nuc":["C179-","A180-","G181-","T182-","G183-","G184-","C185-","G186-","C187-","C188-","C189-","G190-","A191-","A192-","C193-","A194-","G195-","A215-","A216-","T1229C","A1448G","C1979G","A2273G","G3891A","A5462G","A5563G","-6174C","-6175C","T6181C","C6184T","C6205A","G6230-","A6947G","-6955C","A7148G","A7149T","T7919C","T8337A","A8739G","A8935G","A9065-"],"INT":["S39N"],"RT-p51":["I60V"],"RT-p66":["I60V"],"gp120":["-109I","N327-","S365G"],"gp41":["F206L","T307I","L345Q"],"nef":["M48L","Q198R"],"p17":["A115Q"],"pro":["Q61E"],"tat":["K63E"],"vpr":["G94S"]},"labels":{"aa":"INT: S39N; RT-p51: I60V; RT-p66: I60V; gp120: -109I, N327-, S365G; gp41: F206L, T307I, L345Q; nef: M48L, Q198R; p17: A115Q; pro: Q61E; tat: K63E; vpr: 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R136K, I203M, T206S, Q216H, N254K, S255G, I267V; RT-p51: P4H, D6E, K11T, S123T, I142V, I173A, A207K, A272G, A286T, E297V, T312N, D324E, L325I, V326I, V329I, I375V, T377M, T386V, R390K; RT-p66: P4H, D6E, K11T, S123T, I142V, I173A, A207K, A272G, A286T, E297V, T312N, D324E, L325I, V326I, V329I, I375V, T377M, T386V, R390K, H483Q, E524K, K527E; gp120: D4E, N5D, D21K, N52D, H57Y, L97I, D105N, -107K, -109L, M133V, R138W, K141Q, K143R, H145R, L151D, I153L, Q155S, I156L, N158D, S161T, S162E, S181T, D202N, D251N, V264I, N273K, T275I, I279V, H280R, Q287R, F289W, -291T, T292D, D294I, -295E, Y302F, I305V, T308A, E312K, A318V, K319A, K322R, L341P, H347S, K361A, -367W, -368N, -369I, -370S, -371T, I396V, M398L, K414V, I415V, V418R, I424L, N432R, -433D, T436E, M447I, R472K, K474R; gp41: I4L, S42G, A96T, T102S, E109Q, I118T, S125D, Q130L, E133D, I134L, E151A, A156T, N160S, T165S, K172R, V194I, F206V, P209L, T210P, H212Q, R214G, I222T, D232N, R233G, V235I, A243T, D247E, R259L, G286W, L290K, A306T, T307V, A310T, V318A, V321I, A325V; nef: S8R, I10T, V11A, P14T, R19Q, I20M, P25V, E28A, D54A, V56A, R71T, L76V, Y81F, G83A, S88G, I133T, F143Y, R151K, D156A, K158E, H171Q, E174D, R178G, S187T, A188S, K192R, I194L, Y202F; p17: K12Q, E42D, E55A, S66P, T67S, L68I, V82I, R91K, E93D, Q112K, G121S, G123K, K127Q; p2: A7V, N9Q, -10P, -11N; p24: V27I, E71D, E79D, V83T, V86I, I91F, D128E, Y169F; p6: A12L, N14S, W15L, M17I, S24F, -26Q, K27E, E29P, Q30P, K31-, D32-, K33-, E34-, H35-, P36-, P38S, P49L, S51L; p7: K7Q; pro: L10V, G16E, K20R, I72V; rev: I21L, Y28P, S30P, S31A, E32G, R50K, Q51R, R53H, A54S, I55L, S61N, R66G, S67P, Q95E, V97L, G104V, V108E; tat: P3L, N7K, K29V, K40N, G57R, T58G, P59T, N67T, L74S, I76T, I77S, S87Q; vif: R19K, K36Q, H48N, L59V, V65I, R67K, Q73H, R92K, N93T, Y94F, Q105R, Q110H, R131P, Y135F, S137T, K141Q, T154A, R160K, K167S, N186Y, *193W; vpr: E13V, N28L, Y45H; vpu: T2L, E5Q, S7C, A27I, R31K, V43I, K44E, R47S"}}},{"name":"MG989495","node_attrs":{"div":0.14165,"accession":"MG989495","clade_membership":{"value":"CRF01_AE"},"country":{"value":"TH"},"date":{"value":2011.0},"Strain_name":{"value":"2543513P000FL_Sj"},"LANL_subtype":{"value":"CRF01_AE"}},"branch_attrs":{"mutations":{"nuc":["G378C","C379A","T422C","T525C","C544T","T571A","G582A","A599G","A647G","G654A","T662G","C668T","G697C","A724T","T734C","C771T","G803A","G821A","C897T","C917T","C1040T","T1055C","G1109A","C1115T","A1124G","T1182C","C1220T","G1313A","T1335C","G1388A","T1484C","C1490G","C1491G","A1492G","G1493C","A1494C","A1495C","A1496G","G1498A","T1501G","T1502A","-1503A","-1504T","-1505T","T1583C","A1642G","A1656C","A1670G","A1709G","A1719G","T1729G","A1738G","A1772G","A1777G","A1783C","G1794A","G1835A","A1867G","C1960T","C1979G","T1986C","A2005G","T2011C","A2075C","T2083C","G2273A","A2341G","C2353T","A2404G","A2422G","T2440C","C2503T","G2539A","G2542A","G2578A","A2618T","G2656A","A2693G","A2698G","C2776T","A2827C","C2857T","T2935C","G3004A","A3025C","C3067T","A3361G","T3445C","G3477A","G3490A","G3538A","C3542T","A3651G","A3682C","C3734A","T3755A","G3772A","G3796A","T3799A","A3808T","T3857C","A3891G","A3985G","G4243A","C4381T","A4474C","A4498G","A4564G","C4576T","T4585C","G4637A","T4640C","C4652T","G4737A","C4757T","C4800T","G4805A","C4826T","A4847G","A4860G","A4865T","C4937A","A4951G","G4978A","T4991C","A5049G","G5059A","A5112G","G5128A","C5149T","A5159G","A5288G","T5294C","A5305G","G5312A","T5319A","A5431C","G5444A","A5447C","G5448A","T5515C","G5558A","A5575C","A5587G","C5612A","A5613C","C5658T","T5659G","T5660C","A5710C","G5712C","G5734C","C5756A","G5775A","T5808G","A5817G","A5848G","C5860T","T5861G","T5929C","A5955C","G5956A","C6004T","A6019G","A6024C","C6025A","A6031G","C6166T","A6168C","T6171A","-6172A","A6173T","-6174T","-6175G","T6181G","T6184C","T6187A","A6191G","-6198C","A6200G","T6213G","G6218A","A6219T","-6225A","-6226T","A6232G","T6242A","A6303T","C6318A","T6322G","T6328C","A6330G","T6334G","G6336A","A6338C","-6340G","A6349G","T6358C","A6462G","A6471C","C6482A","C6499T","G6566A","G6572-","A6573-","A6574-","A6589C","C6599A","T6637G","T6641C","A6648C","A6679G","A6686-","G6687-","T6688-","A6689-","T6690-","A6691-","A6692G","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","C6721A","G6732C","A6781G","A6797G","G6806A","C6807A","T6808G","G6821C","C6826A","T6827G","A6839C","A6859T","T6888C","A6932T","A6935C","T6943C","A6947T","G6948C","C6951-","T6952-","T6953-","G6954-","-6985A","-6986C","-6987A","-6988T","-6989A","-6990A","-6991C","-6993G","-6994A","-6995G","-6997A","C7016A","A7129G","A7148G","A7152G","A7158T","A7161C","A7186G","T7204C","C7264T","A7294G","G7508A","A7541C","T7575C","C7590A","C7603T","A7641G","C7642A","C7645T","A7655G","A7698T","A7711G","A7722T","G7744A","T7747C","G7750A","C7775T","T7825C","G7831A","G7841A","G7868A","C7932T","C7949A","C7984A","C8009A","A8032T","G8079A","C8103T","G8141A","C8146T","T8155C","T8196C","G8216A","A8273G","G8274C","G8330A","G8388A","A8407G","T8507G","G8554A","G8558A","C8640T","C8648T","A8656G","T8675C","A8678G","C8688A","T8711C","C8741T","G8868A","A8870C","T8923C","G8945A","C9039T","T9078C","T9097G","G9132A"],"INT":["E11D","N39S","D288N"],"RT-p51":["V60I","N175Y","T200A"],"RT-p66":["V60I","N175Y","T200A","R461K","H483Y","N519S","E529D","Q547K","S554T"],"gp120":["S3A","D21N","E34A","H57P","D105I","-107E","N108L","-109N","T110E","-111T","-112E","-113T","-114D","-115S","-116S","-117A","-118R","-119L","-120G","-121N","-122M","-123T","-124D","S130T","K150M","I156M","N159S","N160K","S161N","S162Q","K203R","N206T","P210T","A238T","E241I","I243-","R245S","L249I","N261K","S263P","E265A","S278G","V288A","F289I","Y290V","T292-","G293-","D294-","K315E","A318K","K319E","E323Q","H324Q","F325V","K329Q","M345T","T360S","K361Q","L388I","N432E","-433S","N435I"],"gp41":["M54L","V69I","K80Q","I91T","A96N","D113G","I118V","Y132F","N140I","M176I","G180S","A189T","T210I","P216T","R259H","A267V","R277Q","E280K","I298T","D305N","R324A","A343T"],"nef":["V16I","Q22R","M48I","C55W","R71K","K105R","H116N","E176N","I194T"],"p1":["K4R","N9H"],"p17":["A15Q","T70I","F79Y","A83T","I104M","V107I","N109K","G121A","Q130L"],"p2":["N9H","-11A","-12N"],"p24":["P14S"],"p6":["N14D","M17R","E19-","I21G","T22I","S23T","-26L","K33R","H35Y","V39S"],"p7":["Q9G","K10P","R11K","I12R","-13I"],"pro":["V13I","Q61E","L63P","I93L"],"rev":["A15T","K20N","T34N","A54E","T62S","G98E","P100S","S103P"],"tat":["T19P","S23N","K24T","Y47H","S61N","N67H","K71E","P75S","N80K"],"vif":["V51I","I87M","R92G","D117E","K122R","R131H","T155A","R158K","K176E","R181K","T188I"],"vpr":["Q3R","T19A","R62G","V70I","F72Y"],"vpu":["T2N","L18A","V43L","A50E","N81D"]},"labels":{"aa":"INT: E11D, N39S, D288N; RT-p51: V60I, N175Y, T200A; RT-p66: V60I, N175Y, T200A, R461K, H483Y, N519S, E529D, Q547K, S554T; gp120: S3A, D21N, E34A, H57P, D105I, -107E, N108L, -109N, T110E, -111T, -112E, -113T, -114D, -115S, -116S, -117A, -118R, -119L, -120G, -121N, -122M, -123T, -124D, S130T, K150M, I156M, N159S, N160K, S161N, S162Q, K203R, N206T, P210T, A238T, E241I, I243-, R245S, L249I, N261K, S263P, E265A, S278G, V288A, F289I, Y290V, T292-, G293-, D294-, K315E, A318K, K319E, E323Q, H324Q, F325V, K329Q, M345T, T360S, K361Q, L388I, N432E, -433S, N435I; gp41: M54L, V69I, K80Q, I91T, A96N, D113G, I118V, Y132F, N140I, M176I, G180S, A189T, T210I, P216T, R259H, A267V, R277Q, E280K, I298T, D305N, R324A, A343T; nef: V16I, Q22R, M48I, C55W, R71K, K105R, H116N, E176N, I194T; p1: K4R, N9H; p17: A15Q, T70I, F79Y, A83T, I104M, V107I, N109K, G121A, Q130L; p2: N9H, -11A, -12N; p24: P14S; p6: N14D, M17R, E19-, I21G, T22I, S23T, -26L, K33R, H35Y, V39S; p7: Q9G, K10P, R11K, I12R, -13I; pro: V13I, Q61E, L63P, I93L; rev: A15T, K20N, T34N, A54E, T62S, G98E, P100S, S103P; tat: T19P, S23N, K24T, Y47H, S61N, N67H, K71E, P75S, N80K; vif: V51I, I87M, R92G, D117E, K122R, R131H, T155A, R158K, K176E, R181K, T188I; vpr: Q3R, T19A, R62G, V70I, F72Y; vpu: T2N, L18A, V43L, A50E, N81D"}}}]},{"name":"CRF01_AE_NODE_0000002","node_attrs":{"div":0.10805999999999999,"clade_membership":{"value":"CRF01_AE"}},"branch_attrs":{"mutations":{"nuc":["G1090A","C1745-","C1753-","T4126C","C6148T","-6220A","-6989A","-6990A","A7160G"],"gp120":["N328-"],"p24":["S120N"]},"labels":{"aa":"gp120: N328-; p24: 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T102S, M176I, G180S, I298T; nef: C55S, N157T, S169N; p17: N109K; p2: A7V; rev: A54E; tat: S23N, K24T; vif: R160K; vpu: 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E34P, H35P, P49Q, L50*; p7: Q9P, K10R, R11K; pro: L10M, V11I, I93L; rev: K20N, Y28L, A31P, K39R, T62S, P100S, I109V, G111E, P112S; tat: P3L, N24P, I45L, N67Y, P68S, L74P, S77T; vif: R41K, K63R, R92G, N93T, S95I, Q127N, V128I, R130S, R131S, Q146R, R158K; vpr: T19A, V70I, F72Y, A93T; vpu: E5V, V10I, L42I, V43I, A50E, E63D, 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Q8T, M14L; p24: P14S, A78V, V83L, N120S; p6: S3N, P5L, G18K, K31R, K33N, E34P, H35P, P36-, L38S; p7: K10R, R11N; pro: K14R, I15V; rev: F28L, A37T, A54E, T68A, H82Q, K115E; tat: P3L, N7K, Q17R, A21P, N24K, K29Q, Y47H, P75T, P81Q, G83D, K85E; vif: K36N, Q47R, V51I, I59L, I63T, R67I, N93R, S95R, Y111H, R132E, K176N, P177L, N186C; vpr: A4P, N48Y, R62T, I63F, S96P; vpu: I13V, V14I, L16A, A27F, A30V, R31K, K32R, L34Q, R37K, R47S, E58D, E63D, 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V13I, G16E, K20R, D35E, P39S, K41R, L63P, I93L; rev: K39R, I55L, T62S, H82N, S106P, V108D; tat: E2D, S23N, K29S, E71K; vif: F39C, V51A, N93E, S95N, H110Y, V128I, K151R, T155A, R160K, N186Y; vpr: Q44E, I63T, F72Y, I84R, A93P; vpu: L12V, A27G, I33L, R35K, V69-, N81D"}}}]},{"name":"CRF01_AE_NODE_0000030","node_attrs":{"div":0.11834999999999998,"clade_membership":{"value":"CRF01_AE"}},"branch_attrs":{"mutations":{"nuc":["G697A","G2273A","A2881G","G3685A","C4761A","C5168T","T5333C","G5668A","C5713G","T5851G","G5956T","A6201C","T6213A","-6226T","T6849C","A6856G","-6960A","-6962A","G7026A","T8032G","C8213T","G8239A","G8404A","G8666T","G8753A","G8848A"],"RT-p51":["V60I"],"RT-p66":["V60I"],"gp120":["E34D","-379N"],"gp41":["L304F"],"nef":["R21K","Y81F","Y102H","E108D","S169N"],"p17":["S121D"],"rev":["T62A"],"vpu":["V21I","Q36E","L82V"]},"labels":{"aa":"RT-p51: V60I; RT-p66: V60I; gp120: E34D, -379N; gp41: L304F; nef: R21K, Y81F, Y102H, E108D, S169N; p17: S121D; rev: T62A; vpu: V21I, Q36E, 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P68L"}},"children":[{"name":"MW079300","node_attrs":{"div":0.16308,"accession":"MW079300","clade_membership":{"value":"CRF01_AE"},"country":{"value":"CN"},"date":{"value":2005.0},"Strain_name":{"value":"05GXD033"},"LANL_subtype":{"value":"CRF01_AE"}},"branch_attrs":{"mutations":{"nuc":["A388G","C602A","C645T","C668T","A711G","A716G","T774G","G821A","G977A","G1016A","C1098G","A1145G","T1172C","G1173A","G1268A","C1406T","A1461G","A1495G","G1498A","A1562G","C1610A","A1614T","C1615T","A1624G","C1627G","A1656C","T1682C","A1700T","A1701T","A1719G","G1739C","A1740T","C1775A","A1776C","-1778T","C1831T","G1835A","G2273A","G2386A","T2449C","G2580A","A2626G","T2694C","A2752G","G2808A","A2815G","A2825G","T2899C","G2909C","C2975A","G3010A","A3027G","A3124G","G3127A","T3172A","A3277G","G3279A","G3307C","T3368C","T3433C","G3538A","A3574G","A3684G","G3715A","A3727G","A3808T","A3854G","A3855G","G3989A","T4015C","C4126T","G4268A","A4333G","T4412C","A4498G","G4573A","T4585G","T4656C","T4715C","G4859A","T4868C","A4870G","C4889A","A4976G","A5049G","T5052C","G5087A","G5123A","T5125C","C5213A","A5285G","A5287G","G5289A","A5357G","C5397T","A5446G","C5451T","A5499G","G5652T","T5658C","G5673T","A5784G","A5817G","C5860T","G5954A","A5955G","G5956T","G5965A","A5972G","C6024T","G6029C","A6030C","C6067A","T6166C","A6167G","T6170G","G6172T","C6175G","T6181G","C6184T","T6185A","C6186A","A6194G","A6195T","T6196C","G6197C","-6203A","-6206G","A6275C","T6285C","T6301C","A6303G","C6317T","G6322A","A6330C","A6333G","G6336C","-6340G","A6362T","A6489C","C6499T","G6503A","G6628A","T6641C","C6678G","G6681A","A6686C","G6688T","G6726C","C6729A","G6732A","G6734A","A6735T","A6737G","C6763T","C6764G","A6767G","G6773A","A6779G","T6785A","T6786A","A6788G","A6799C","C6807T","G6810A","A6822G","G6849C","A6891T","C6955T","-6956C","-6957T","-6958A","-6984C","A6996C","G6999A","A7001G","A7037G","G7056A","A7085G","A7088G","G7089A","T7090G","T7156A","C7165T","T7466C","A7532C","G7534A","T7622A","C7623A","G7628A","A7629G","A7630T","G7633C","A7640G","C7645A","T7656C","A7688G","G7702T","G7717A","A7769G","A7790G","G7791A","T7801A","T7888A","A7977G","C7984A","C8009A","G8019C","G8030T","C8112T","C8120A","A8128G","T8171C","A8173G","G8191A","T8196C","C8287A","A8288T","C8311T","G8329A","G8330A","C8331G","G8356T","T8366C","A8367-","G8368-","C8369-","A8370-","T8371-","A8372-","G8373-","T8374-","G8375-","G8376-","G8377-","A8378-","G8393A","C8406A","A8407G","C8415G","A8497G","T8567G","G8588A","A8617G","A8621T","G8666A","T8711C","G8738A","T8756C","A8794G","A8795C","A8798T","G8808A","G8871C","G8904T","C8934A","T8939C","A8947T","A8981C","C9017T","A9131G"],"INT":["E11D","N27G","V72I","V165I","D270E"],"RT-p51":["V60I","S162N","I200T","R238K","I244V","A272P","P294T","K311R","R395K","E404D"],"RT-p66":["V60I","S162N","I200T","R238K","I244V","A272P","P294T","K311R","R395K","E404D","K530R"],"gp120":["E34S","I40V","P57L","E59P","N71K","N105D","A106V","-107T","-108W","-109T","T110N","-111V","-112T","-114S","-115T","-116N","-117V","-118P","S119N","-120I","-121G","-122N","-124T","K141Q","V144A","K150R","P155S","M156I","N158G","N160K","S161T","Y163T","I164K","T170S","K212T","V217I","S263P","T275R","R276K","M279-","T280-","I281-","G284-","P285-","G286-","R287-","V288-","F289-","Y290V","K291T","T292M","E294P","I295G","I305V","N309D","F311N","K312E","K315N","A318V","E323G","S332T","H346L","N365M","-368L","-369A","-379K","-381A","G382E","-383D","I395V","G401E","I411V","S412E","G434K","E436D"],"gp41":["K77Q","S107N","E109S","E110D","N113D","N114K","I118T","N129D","E133D","T156A","S163D","N166K","N195K","E225G","S239T","A243S","T270I","R273K","I298T","I329F","A343S"],"nef":["W5L","S9-","I10-","V11-","G12-","Q22R","P25A","-50S","N52-","K92R","E93D","R151S","E152D","D156N","D177H","A188S","L198M","Y202F"],"p1":["N9H"],"p17":["K18R","H89Q","S126G"],"p2":["I13V"],"p24":["L15V","P123A","V148I"],"p6":["T8S","N14D","-23K","-24Q","-25E","-26Q","Q28E","E29H","-31P","S51L"],"p7":["K10R","R11K","D48E","T50F","Q53R","A54G"],"pro":["V13I"],"rev":["A54E","E57D","S61I","T91Q","V108A","I109V"],"tat":["T24A","N80R"],"vif":["N95S","D101E","T155A","S156P","I180T"],"vpr":["D7N","P37T","I61V","R62K","I84M"]},"labels":{"aa":"INT: 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p17: K18R, H89Q, S126G; p2: I13V; p24: L15V, P123A, V148I; p6: T8S, N14D, -23K, -24Q, -25E, -26Q, Q28E, E29H, -31P, S51L; p7: K10R, R11K, D48E, T50F, Q53R, A54G; pro: V13I; rev: A54E, E57D, S61I, T91Q, V108A, I109V; tat: T24A, N80R; vif: N95S, D101E, T155A, S156P, I180T; vpr: D7N, P37T, I61V, R62K, 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-26P, S36A, V39I, N47S, L51S; p7: N12T, K41Q; pro: L10V, L90M; rev: D7N, D8E, R14N, R17K, R41Q, P67S, C85-, G86-, E87-, G88-, C89-, G90-, T91-, V108N, K115E, *117E; tat: N23T, K29I, L36M, N53K, S61R, P68S, P70S; vif: H56Y, V66I, G71S, D78E, R132K, S144P, K155R, K157T, H192Y; vpr: T19I, R36G, G41E, I46V, E58I; vpu: Q2L, V5G, V10A, V14I, K35R, -69D, 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D80A"}}}]},{"name":"CRF45_cpx_NODE_0000002","node_attrs":{"div":0.08338000000000001,"clade_membership":{"value":"CRF45_cpx"}},"branch_attrs":{"mutations":{"nuc":["-305A","T1724C","C2694T","A3151G","T3225A","G5087C","A5707G","G5864A","T6582G","A6605G","-6689A","G6693A","A6778C","-6831G","G7160A","A7373T","C7597T","T7642C","C8223T","A8531G","T8770A","G8868C","C8978A"],"RT-p51":["A200I","A272P","M377Q"],"RT-p66":["A200I","A272P","M377Q"],"gp120":["D4N","M243R","N251D","-373N","-377S"],"gp41":["T307I"],"nef":["F143Y"],"vif":["R167S"]},"labels":{"aa":"RT-p51: A200I, A272P, M377Q; RT-p66: A200I, A272P, M377Q; gp120: D4N, M243R, N251D, -373N, -377S; gp41: T307I; nef: F143Y; vif: 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I74L, V112T, D134G, Q136H, E167D, T206S, D207E, I220V, A265V; RT-p51: E6N, V8I, K11Q, K49R, K122E, D123N, F171Y, K174R, E177D, K277R, A286T, P294S, A297T, S322A, Y346H, I357T, S359A, V375I; RT-p66: E6N, V8I, K11Q, K49R, D123N, F171Y, K174R, E177D, K277R, A286T, P294S, A297T, S322A, Y346H, I357T, S359A, V375I; gp120: N4S, T35A, E59V, H77Q, N102E, T104H, -108N, -109I, -112N, -114T, -115G, -116I, -123K, -124E, K127R, F131Y, L151I, Q155P, N161I, S162L, K201N, E240D, E241D, R243K, A253V, L260F, N261A, E262T, N272G, Q287K, A291T, T292D, G293D, D294I, S306T, K307A, T308S, N309S, N311K, T313A, K316N, A318T, A319K, K320E, -328T, K329-, -368F, -370E, -372A, -374V, -375T, -376G, N397R, Q404K, V414E, N420T, N435V, E479Q; gp41: L9F, I24L, R74A, T96N, S102N, N105S, S107A, Q108Y, D113G, S125N, Q129G, D148E, A151E, S165T, N166K, M176I, S239N, A245V, N298K, I309V; nef: T23A, D38A, V43I, S46R, G83A, V85F, V101I, Y120F, M148I, E152D, I168M, S169N, R178G, K184T, K198E; p1: S9N; p17: K30T, L31M, L46I, G49S, L64I, A67T, K76R, Y79F, D93K, I107L, S124N; p2: T10V; p24: I15V, S16T, I27V, V83T, I124V, E128D, T178S, E187D, R203K, G220A; p6: T22S, Q30L, P36A, V39I, S51L; p7: R3K, G4S, T50S; pro: V13I, V15I, E35D, I85V; rev: S7-, T8S, D9T, I21L, L64V, A68E, A98G, K115E, *117E; tat: E2D, V36A, L39I, N40T, R56G, G57T, T58P, P59H, H60G, S61-, N67T, I69V, K71E; vif: R17K, K33R, G37D, V98I, H127D, Q136P, T137A, N140S, S144T, Y147F, T155K, T159R, K160R, R181K, G182D, H187R, M189I; vpr: E17Q, T19A, H28Q, T49N, I63M, Q77N, R85P, A93S; vpu: Q2N, P3A, E5V, L7T, A8-, V14A, I21G, T24I, I25L, V26A, K37E, I75A, G77I, D78N, I79N, D80-, 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N160S, D163S, K172R, L273I; nef: R21K, E62G, E65P, Y102H, V114I; p1: K4R; p17: S9T, K28Q, K95R, S111Q, Q113T, K114-, T115-, D121G, S126C, V128I; p2: S5T, -10T; p24: V11I, A14S, E45D, Q50H, M54A, I58V, E79D, I91H, M96L, I115V, G116A, A177S; p6: M17V, -30G, D32-; p7: I12N; pro: R70K; rev: V15A, G90R, T91D, V97L, S107P; tat: N12K, P59A, H65N, P68S; vif: Y30H, H48D, K50R, D61E, K63W, T67R, H73Q, T74P, L124I, Q127R, V128I, Q136P, N140S, R167K; vpr: R62K; vpu: A7Y, A8S, F27L, R31K, K37R, E40D, 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Y","R41K"]},"labels":{"aa":"INT: R14K, G106A, Q221S; RT-p51: E169D, T173K, A200T, K211R, Q245T, D248E, D250E, A272S, K277R, D291E, I292V, V293I, I329V, R357M, S359G, V375I, T377L, M403R, V435M; RT-p66: E169D, T173K, A200T, K211R, Q245T, D248E, D250E, A272S, K277R, D291E, I292V, V293I, I329V, R357M, S359G, V375I, T377L, M403R, V435M, E471D, H480Q, H483N, S491L, R512K, N519S, K524Q, E527K, K530R, S534A; gp120: N108-, N160-, N161-, S162-, K201N, P210K, K212R, E241K, A288V, N369-; gp41: N109K, P219H, V235I, L265S, V290L, D305N, A310V, A322I, F340L; nef: Q15K, I20M, R21Q, P24E, Q35R, D38E, F85V, D98E, I101V, Y102W, K144E, A151E, A156D, I168A, E174D, E176P, R178K, M182V, K184R, D186N, L191F, K192E, I194K, E197I, L198M; p1: S9H; p17: A119T, G123R, S124N, K127Q; p2: Q8T, -10S, -12T; p24: A6L, S33N, M54T, I58T, D71E, V83L, P92A, G116A, F169Y, T178S, E180D, S200T, G225S; p6: P1L, M17F, S23-, S24P, P25S, -26Q, E29D, R31K, *50L; p7: R3K, Q9L, R11K, I12V, I13V, L24I; pro: K69Q, M89L; rev: V16I, R53H, G96Q; tat: N24T, V36L, R62H, P84T; vif: G37K, H48N, K50R, R67K, R77K, H80Q, T159S; vpr: I46V, E48T, I84T; vpu: P3A, E5Q, F27Y, 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R14K, Y227F, S255N; RT-p51: P4S, R104K, D123N, I135V, I178M, P243S, K281R, S322T, I329L, A376T, V435I; RT-p66: P4S, R104K, D123N, I135V, I178M, P243S, K281R, S322T, I329L, A376T, V435I, S491P, K554R; gp120: D4N, D57N, Q104H, -112S, N113T, -123K, G124E, L137I, Q142H, P155Q, N158A, N161T, S162T, I173M, E183D, K212T, E241G, I256L, I258V, V261A, K262S, N272G, A291S, -293D, D297N, H302Y, K307E, E309D, Q315K, Q319G, K323E, H324Y, I344T, G351R, -368Y, -372T, -373M, -382N, N397R, R401K, I414E, L424I, N432Q, N433E, V460I, E464K, R472P; gp41: Q29R, I37T, R46K, K56R, N96T, D109E, D113N, Q119E, S125D, Q129H, Q147R, A156D, A189T, V193I, T210P, R221G, T307V, V321I, A325V; nef: V11P, I28P, A50T, C55R, L58V, G64E, G83A, K105Q, H116N, Q125H, P129S, G159R, M173I; p1: S9N; p17: K28R, M31L, L46I, T81A, S109R, N110K, K114R; p24: E79D, V83T, N121D, Q179R, N183G; p6: F15L, R31G; p7: S4G, R7K, K34R; pro: N37D, K70R; rev: D7V, A8T, V15I, V16A, Y28S, S31P, K39R, A54E, F67P, G96Q, L103P, I109V; tat: N7K, C34-; vif: K36T, D37G, G60R, D117E, K122T, A123V, I124T, D134N, A137S, R159I, K167R, N190H; vpr: E17A, E24D; vpu: Q5H, A18V, V21I, I28L, R34V, D40N, R41K, E66K, 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R14K, V72I, S119P, F185L, R187E, R284G; RT-p51: E28A, K39D, K49R, V60I, S322T, V375A, D432E, V435A; RT-p66: E28A, K39D, K49R, V60I, S322T, V375A, D432E, V435A, I495V, E514D, L517I, K530R, K558R; gp120: S1L, A2E, S3A, N4S, -5K, L6F, T9I, V10F, Y12F, V14G, V16G, D21N, T22A, C26G, A27Y, D29Y, A30P, A32T, Y33H, D34K, T35N, E36*, V37P, H38T, N39K, V40D, T43G, A45G, T49F, D50Y, Q54K, E55*, V59A, N60I, T62-, E63-, E78-, D79-, I80-, I81-, S82-, L83-, W84-, D85-, Q86-, S87-, L88-, K89-, P90-, C91-, V92-, K93-, L94-, T95-, P96-, L97-, C98-, V99-, T100-, L101-, N102-, C103-, T104-, -122E, -123P, -124G, E125A, R127Q, M133I, K141Q, R142K, N159T, N160D, S162K, A176G, K201R, K212N, E241D, N261T, I269M, T275A, R276K, K277I, S278R, I279H, R280-, -282H, -283I, A288V, Y290H, A291T, R292N, G293N, D294-, I295-, Q300K, H302Y, N304E, S306N, K307G, Q315R, Q319E, R322-, H324Q, W325K, -326Y, -327W, K329N, I332N, N335K, S336P, L343I, N358Y, G361K, S365G, W367L, -368H, -370G, T371N, -372W, -373S, T374M, -375P, -382G, -383K, -384G, P389Q, R391K, V402T, I414V, R416K, N432G, T436E, N437T, D446N, R448K, E479Q; gp41: S35T, K90R, S107N, Q108L, D109T, N114K, S125N, D148E, G215D, R233K, L237F, L244I, C253F, L265S, R276H, L277S, W286K, G293V, T302S, L304F, A310V, V311I, I321T, G326C, H331N, F340L, E341K; nef: S8N, S9R, I10L, V11E, P14S, R19I, E28K, V33P, D36G, L37V, D38G, H40L, G41S, A42P, I43-, T44-; p1: S9H; p17: R30K, L34I, V35I, L46I, E62G, V82I, D93E, N109Q, K114Q, K127N; p2: Q8H, -12S; p24: V27I, H87Q, E187D; p6: P5T, S23P, R31K; p7: Q9K, R11T, D48E, T50P; pro: L10I, K69Q; rev: T8P, R32K, D53N, I55V, S56C, T62D, S67P, A68T, V104E, E105K, I109V; tat: E2D, W32Y, V36A, H54P, P70S, V80I; vif: R19K, T20S, L24I, G37N, V51I, R63K, R67T, H73Q, K77Q, H80Q, L102M, D113K, I124L, R130I, Q136P, N140S, V166I, R181K, N190S, *193W; vpr: Y15H; vpu: V10I, G11R, V14I, A15S, A19T, V21I, I25M, V26L, A27I, Y30F, R34K, Q36H, R37N, D40C, L42F, E44G, R45T, R47*, E48K, A50S, E51K, D52C, S53G, S57L, E58*, D62Y, E63*, 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I31V, I50M, I113V, T218I, R284G; RT-p51: E6D, T11Q, K49R, Y121H, G123D, A173T, N175Y, P243A, Q245E, D248E, E297K, D312E, I329V, S379A, K388R, V435I; RT-p66: E6D, T11Q, K49R, Y121H, G123D, A173T, N175Y, P243A, Q245E, D248E, E297K, D312E, I329V, S379A, K388R, V435I, N447S, R461K; gp120: N4-, -5K, R18K, D21E, N57E, M67I, N71K, K93Q, N102K, -105A, -106N, -122E, -123I, -124N, -126I, K141Q, L151V, N160I, N161S, S162E, V226M, I269V, S278G, I281M, Q287K, A288V, R292Q, H302Y, W325Y, N335K, -368N, -370D, -372V, -377N, N379D, I387T, P389Q, I414V, L424I, N433D, N434S, T436-, R448K, E479Q; gp41: V2I, V7F, I24L, S42N, H53Q, S107T, D109K, S133G, L152F, T157N, R172K, I193V, T210V, T232G, V238A, D247E, C253L, L254I, F263L, I264V, V290T, T302S, I309V; nef: G3N, Q22R, A53P, G83A, L100M, F139P, G140A, Y143F, R151V, E154G, N156D, E174D, R178G, S187T, I194V, M198L; p17: M31L, E42D, A54G, Q58L, T67A, S72T, L75I, S124N, S125N, K127Q; p24: V3M, V15L, M83V; p6: S14N, F15W, P36V; p7: K7N; pro: L10I, N35D, L63S, 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D80N"}}},{"name":"MN153487","node_attrs":{"div":0.17154000000000003,"accession":"MN153487","clade_membership":{"value":"CRF22_01A1"},"country":{"value":"CM"},"date":{"value":2008.0},"Strain_name":{"value":"08CMBDSH138"},"LANL_subtype":{"value":"CRF22_01A1"}},"branch_attrs":{"mutations":{"nuc":["C193T","A374G","G386A","G407A","C496G","C531G","C532T","A541G","A585G","C586T","A654C","G671A","A678C","C679A","G697A","A699G","-714C","G738A","T824C","A989C","G1016A","C1061T","A1089G","G1109A","A1157G","G1199A","T1223C","G1298A","G1313A","C1322T","C1331T","C1385T","G1388A","G1403A","G1430A","A1452C","G1455A","G1472A","A1565G","G1619A","A1703T","C1706T","G1771A","A1772G","A1819G","C1868T","A1927G","G1963A","A1982G","T1986C","A2190T","C2296T","A2297G","C2299T","C2353A","A2508C","G2539A","A2626C","A2693G","A2808C","T2873C","G2914A","G2929A","G2951A","C2960T","T2978C","C3023T","A3145G","G3162A","A3165G","T3175C","A3192G","A3199G","A3200G","C3201T","G3203A","A3205T","G3208A","G3230A","C3252T","C3266T","A3400G","G3409A","T3433C","C3469A","T3602C","G3631A","T3644A","A3682C","A3709G","A3768G","G3769A","A3836G","T3843C","T3865A","A3896G","A3907G","A3973C","G3991A","C4021T","A4048G","A4071T","A4130C","G4131C","C4140T","C4144T","G4243A","A4270T","A4407G","T4537C","A4625G","A4721C","C4761T","G4774A","T4793C","C4800T","G4802A","A4811G","A4815C","C4826A","G4864A","A4865G","G4870A","T4883C","C4899A","A4968G","G5049A","C5050A","T5084C","T5102C","C5125T","G5128A","T5147C","C5149T","A5159G","A5161C","G5226A","T5228C","A5230G","A5246G","A5277T","C5280T","G5359C","G5403T","A5426G","G5482A","T5490C","A5548C","G5556A","G5566A","G5599C","T5600C","A5601G","T5602C","C5611A","C5614T","G5619T","G5620A","G5628A","G5683A","G5686C","A5689-","T5690-","A5691-","G5692-","A5693-","A5694-","T5697-","A5698-","G5699-","G5700-","G5712A","C5713G","A5719-","A5720-","A5721-","A5722-","T5723-","A5724-","G5725-","A5726-","C5727-","A5728-","G5729-","G5730-","T5731-","T5732-","A5733-","C5734-","T5735-","T5736-","G5737-","A5738-","A5739-","A5740-","G5741-","A5742-","A5743-","T5744-","A5745-","A5746-","G5747-","A5748-","G5749-","A5750-","A5751-","A5752-","G5753-","A5754-","G5755-","C5756-","A5757-","G5758-","A5759-","G5767A","G5768A","G5775A","G5779A","G5812T","A5818G","C5826T","C5833T","A5849T","T5857G","-5864A","-5866C","G5909A","G5915A","C5922T","C5944T","A5983T","A6008G","A6037G","T6046G","C6052T","C6165T","-6169G","-6171T","-6174A","-6175A","A6182T","T6187C","A6188C","C6189G","C6190A","-6191G","-6192G","-6193A","-6195A","-6197G","-6198A","-6199C","-6201C","C6202A","-6203G","-6204C","-6205G","A6206G","-6207A","-6211G","-6217T","-6219A","-6220C","-6221A","-6222C","-6223A","-6225C","-6226G","G6230A","G6234A","T6241C","T6242A","C6263A","A6273G","A6282G","T6298C","G6317A","A6320T","-6322G","A6327G","T6340C","G6345T","A6346G","C6347T","A6350G","T6418C","C6446T","T6460C","C6483T","C6511T","G6547A","G6593A","A6605G","T6649A","T6660C","A6683G","T6787C","G6802T","A6808C","A6821G","A6823T","A6840C","A6848G","T6860C","C6861A","T6875A","A6881G","A6926G","G6935A","C6937A","-6963T","-6964G","-6968T","-6969G","-6970G","-6971A","-6972A","-6973T","-6974A","-6975C","-6976G","G7004A","-7005A","T7014G","T7015A","G7072A","G7102T","C7124T","C7127T","A7135G","T7150C","A7155G","T7159C","G7160A","C7161G","A7162T","C7201T","T7222C","C7250T","G7276A","A7348T","A7396G","T7591C","T7606A","T7622A","C7625T","G7627T","A7630T","A7641G","T7642C","G7677A","C7690A","G7701A","C7782A","G7790A","G7862A","G7873A","T7921C","G7980A","G7995A","A8069C","G8070T","C8080A","T8094G","C8106T","A8119G","T8138A","G8145C","C8149T","T8172A","C8213T","G8216A","C8293T","C8369T","A8400C","C8416T","A8420G","G8439A","T8456C","T8505C","G8506T","G8535-","A8536-","G8537-","G8558A","A8584T","G8590C","A8663G","G8666T","T8672G","G8682A","G8738A","G8804A","A8808G","A8812C","T8813C","A8827C","T8829A","A8859G","T8860C","T8887G","G8888A","A8893C","C8934A","C9068T","C9075T","T9084A"],"INT":["T21A","V23A","N41D","Y99F","S119P","T122I","K211R","R284G"],"RT-p51":["K32I","S68G","D86E","E138A","E177D","K238T","A286T","R356K","K357R","K366R","T369V","E370N","T386I","I435M"],"RT-p66":["K32I","S68G","D86E","E138A","E177D","K238T","A286T","R356K","K357R","K366R","T369V","E370N","T386I","I435M","L517I","E529D","K558R"],"gp120":["S1R","-5N","D19N","T23I","N52D","N64K","T104I","-105E","A106V","-108N","-109D","-111A","-112E","-113M","-123K","-124K","-126V","-127K","S130T","M133I","L137I","K140R","K143R","I156L","N158S","N159S","I166V","P210L","E247K","N251D","N265K","N272S","K277E","D294E","Q316D","E323D","K329T","I332V","S336H","L341I","I343V","N358D","G361R","-370M","-372W","-373S","-375T","-377S","G382N","I387R","M406I","N434S","T436S"],"gp41":["S107T","Q108Y","D113G","S125N","D129E","S133N","T160N","D163N","V187I","G226D","R231K","S256L","I264S","A268V","W279R","G281A","V290K","L304F","D305N","W326C"],"nef":["I20L","A25V","V33I","C55L","E65-","Y81F","G83A","E108D","V114I","N156D","N157T","N162T","C163S","M173A","M182R","K184T"],"p17"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T21A, V23A, N41D, Y99F, S119P, T122I, K211R, R284G; RT-p51: K32I, S68G, D86E, E138A, E177D, K238T, A286T, R356K, K357R, K366R, T369V, E370N, T386I, I435M; RT-p66: K32I, S68G, D86E, E138A, E177D, K238T, A286T, R356K, K357R, K366R, T369V, E370N, T386I, I435M, L517I, E529D, K558R; gp120: S1R, -5N, D19N, T23I, N52D, N64K, T104I, -105E, A106V, -108N, -109D, -111A, -112E, -113M, -123K, -124K, -126V, -127K, S130T, M133I, L137I, K140R, K143R, I156L, N158S, N159S, I166V, P210L, E247K, N251D, N265K, N272S, K277E, D294E, Q316D, E323D, K329T, I332V, S336H, L341I, I343V, N358D, G361R, -370M, -372W, -373S, -375T, -377S, G382N, I387R, M406I, N434S, T436S; gp41: S107T, Q108Y, D113G, S125N, D129E, S133N, T160N, D163N, V187I, G226D, R231K, S256L, I264S, A268V, W279R, G281A, V290K, L304F, D305N, W326C; nef: I20L, A25V, V33I, C55L, E65-, Y81F, G83A, E108D, V114I, N156D, N157T, N162T, C163S, M173A, M182R, K184T; p17: A54G, P66V, S67N, K69R, T84V, I107L, T115Q, A118E, G121D, T122A, K127Q; p2: T10P, G11S; p24: V3M, S120G; p6: R31K, N47S; pro: I62V, L63P; rev: E11D, R14K, Q74P, L78I, H82Q, T91A, V97E, R99S, Q101*, L103F, D108E; tat: E9D, Q17R, V36I, T58P, D64N; vif: E45D, R63K, K77Q, H80Q, R93K, S95N, Q105K, I128V, A155K, T180I, R181K, T188I, H192P; vpr: Y15H, T19A, G41D, N48D, E58V, A59V, R85P; vpu: P3S, L4F, E5D, W7*, V26-, A27-, I28-, E29-, Y30-, R31-, K32-, Q36I, R37I, K38-, I39-, D40-, R41-, L42-, L43-, E44-, R45-, I46-, R47-, E48-, R49-, A50-, 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R62H, K71E, E86K; vif: R36S, F39V, S46N, R47G, R67T, Q73H, T74P, R77K, H80L, I87M, R90T, Q91L, K92R, R93S, S95K, D101A, V166I; vpr: T19A, H45Y, I63T; vpu: V14I, K38N, -70Y, -71D, 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D78A, K92E, L125V, E127Q; vpr: R32K, S94G; vpu: V21A, K37E, D40N, N69D, -73H, -74V, -75P, 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V245F, F340L; rev: C63F; vif: M29I; vpr: H45Y, 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S24N, S119T, A124S, I208L, T218I, N222Q; RT-p51: T39A, S68G, E177G, A272P, K277R, L279M, R307K, V375I, T377Q, V435R; RT-p66: T39A, S68G, E177G, A272P, K277R, L279M, R307K, V375I, T377Q, V435R, V466I, T470D, E471G, H483Y, E514D, L517I, S534A; gp120: -3N, E4-, -5K, K18R, I56M, H57N, L58I, E59T, T104S, -105N, -106I, -107K, N108K, -109D, -110V, -112S, -114I, -115S, -116C, -117G, -118K, -119R, -120L, -121T, -122E, -123H, V133A, T135A, E136D, K141Q, K143E, A146S, R150K, V153I, Q155P, N157Q, N159H, S162I, Y163F, N167I, A191T, F195Y, T216S, Q259H, K262E, P263T, N272G, V279I, T292A, D297N, Q300K, V305I, T308G, N312K, K316R, K323E, -326P, T330I, I332M, N335S, S347I, N349S, -368D, N369G, -370T, T371A, -372Q, -373S, -381D, -382D, N383D, T387L, Q389P, C390R, K393N, Q394I, V396I, W399R, Q400R, Q404L, A405S, M406I, Y407S, I411R, Q412R, E414T, I415R, E418T, N420I, G423V, R428G, D429G, G431S, N432T, N433T, N435T, T436N, N437D, E438D, F440L, R441P, P442A, G445E, D446K, R448N, D449Y, N450C, W451R, S453-, 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R14K, I72V, T136K, G163T, I234-, P238-, V281M; RT-p51: K20R, T35I, K104E, V135I, N137S, A158S, A162S, T165I, T173A, V326I, K366R, T369A, V375A, T377M, K395R, A400T, V435A; RT-p66: K20R, T35I, K104E, V135I, N137S, A158S, A162S, T165I, T173A, V326I, K366R, T369A, V375A, T377M, K395R, A400T, V435A; gp120: N1S, -5K, H57K, H77N, -109I, -110T, N113-, -116S, -117G, -118N, -119N, -120I, -121K, -122E, I126T, E136D, K141E, L151I, V153I, I156F, N157K, N161V, F195Y, N201R, K203E, K224R, E240K, L260F, K262Q, P263S, K265T, N272S, T292A, Q300R, K307G, A308S, E309K, N312S, T319Q, K323D, H324N, F325Y, -326F, N327Q, A334D, N335K, S336H, S365G, S370G, -372S, -373S, -377S, -379H, -381W, -382V, Q404R, R416K, E418V, T471Y; gp41: L4I, F8L, I24M, K46R, R77K, N109K, N133D, E137Q, A156D, N160S, D163N, N166K, L191I, H211Q, G225E, D230G, R231K, V235I, F263L, A264L, L277R, N287S, Q294R, I307V, V311T, I321L, G322V, R324G, R330L; nef: W5C, S9I, I10V, V11-, T23G, P24A, P25G, F85V, E152D, V153I, G159E, K192T, R196K; 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D81N"}}},{"name":"CRF02_AG_NODE_0000018","node_attrs":{"div":0.14386000000000002,"clade_membership":{"value":"CRF02_AG"}},"branch_attrs":{"mutations":{"nuc":["T117G","A159-","-167A","A356G","C482T","A509C","G518A","A527G","A540G","A541G","C558A","C583T","T596C","A605G","T646G","G667A","A670G","A673G","A674G","A675C","G706A","-711A","-712G","-713T","A762G","A878G","C897T","G908A","G932A","A968C","A1025G","G1192A","G1199A","T1214C","G1247A","T1262C","G1268A","C1295T","G1301A","T1421C","-1456A","A1458-","C1460-","A1529G","T1613C","T1682C","G1727A","A1736G","A1740G","C1752T","G1760T","A1766G","T1790G","C1873T","A1906T","C1985T","T1986C","A2179G","G2215A","A2329G","G2362A","C2464A","T2476C","T2479G","G2498A","T2499A","G2518A","G2530A","A2616G","A2699G","G2714A","A2726C","G2727A","A2728C","C2740T","A2743C","A2788G","C2845T","T2908C","G2932A","T2935C","G3029C","A3043G","C3055T","C3067T","T3118A","T3132A","A3192G","G3264A","G3293A","T3303C","A3400G","T3412C","G3448A","A3532G","C3542T","A3574G","A3583G","G3595A","C3649T","T3652C","G3664A","C3712T","C3751T","G3756C","T3757C","A3768G","G3869A","G3907A","A3944G","A3953G","A3973T","G4156A","A4162C","G4306A","C4428T","T4450C","A4522T","A4558G","C4576T","G4637A","A4650C","T4703G","A4787G","C4800T","G4802A","C4820T","A4862T","A4865C","T4886C","C4902T","C4911T","A4956C","G4968A","G4981A","G5018A","C5034A","G5036A","A5049G","C5050A","G5060A","A5065G","T5078A","A5119G","C5125T","G5143A","G5179A","T5203C","C5213G","C5214T","A5215G","A5227T","T5239G","G5246A","A5248C","A5277T","T5293C","C5397A","C5398A","C5412T","T5448C","T5462A","G5537C","C5572A","A5602T","A5665T","G5668A","C5678G","T5739G","T5778C","G5784A","G5839C","A5848G","A5856G","G5881A","C5884A","T5899G","G5954C","A5957C","T5964C","C5974T","C6023G","T6064C","G6076A","G6079A","A6087G","C6109T","A6119C","T6154A","-6167G","-6169C","T6181C","C6183A","-6192A","-6197A","-6199C","-6200A","-6202C","-6205T","-6220G","A6235G","T6242A","G6260C","A6261T","A6262C","T6337C","A6394G","C6446T","T6454C","T6457G","G6572A","A6578G","A6580G","A6602T","A6605G","C6612G","C6618T","A6648G","G6669A","A6684C","A6691C","G6742A","T6760C","A6775T","C6800G","T6808C","C6838T","C6840A","C6855A","T6856G","A6857G","C6859A","T6860C","C6861A","C6862T","T6875G","A6881G","T6952C","A6986-","A6987-","T6988-","A6992-","A7005-","C7006A","A7010C","A7012C","A7020C","T7039C","G7040A","C7089A","G7094A","G7101A","G7102A","G7106A","A7108T","C7124T","A7129G","A7136C","A7138G","T7153C","T7159-","A7161-","A7265T","G7315A","C7463A","A7470G","A7532C","A7552C","C7590A","C7597A","C7623G","C7651A","A7668G","C7684T","A7700C","C7792T","T7801A","A7807G","A7822C","G7868A","A7880T","A7943G","A7953G","G8001C","C8038T","T8094C","C8095A","A8118G","T8122-","C8123-","T8124-","G8125-","G8126-","G8127-","A8128-","C8129-","A8130-","C8131-","A8132-","G8133-","C8165G","T8171G","A8208G","C8251T","G8279A","G8280T","A8308G","C8321T","G8354A","A8385G","G8388A","T8390C","A8402G","A8407G","A8409G","C8411A","C8412G","C8413A","T8414G","C8415T","A8441G","A8455C","A8474C","G8528A","G8537A","C8543A","A8573G","T8585C","T8594A","A8812C","A8879G","T8897C","C8906A","G8929A","C8957T","C8964T","G8977A","A8978G","C8979A","G9005A","G9006C","G9007T","A9009G","T9012G","G9013C","G9016T","T9017C","T9018C","T9019G","A9023T","G9025T","A9026G","T9036-","G9037-","G9038-","C9039-","T9040-","A9041-","A9042-","C9043-","C9044-","C9045-","T9046-","C9047-","A9048-","G9049-","A9050-","T9051-","G9052-","C9053-","T9054-","G9055-","C9056-","A9057-","T9058-","A9059-","T9060-","A9061-","A9062-","G9063-","C9064-","A9065-","G9066-","C9067-","C9068-","G9069-","C9070-","T9071-","T9072-","C9073-","T9074-","C9075-","G9076-","C9077-","C9078-","T9079-","G9080-","T9081-","A9082-","C9083-","T9084-","G9085-","G9086-","G9087-","T9088-","C9089-","T9090-","C9091-","T9092-","C9093-","T9094-","T9095-","G9096-","C9097-","T9098-","A9099-","G9100-","A9101-","C9102-","C9103-","A9104-","G9105-","A9106-","T9107-","T9108-","T9109-","G9110-","A9111-","G9112-","C9113-","C9114-","T9115-","G9116-","G9117-","C9121T"],"INT":["V32I","S57G","I60V","T218I","D288N"],"RT-p51":["D123E","V135K","K174R","I202V","E207K","R211H","E312Q","F346Y","K366R","R390K","A400T","M403T","V435M"],"RT-p66":["D123E","V135K","K174R","I202V","E207K","R211H","E312Q","F346Y","K366R","R390K","A400T","M403T","V435M","H483Y","S554T","K558R"],"gp120":["N1S","-3N","E4-","D34Q","T35P","V37A","H57N","E78G","K89Q","T104H","-115S","-116S","-118S","-121M","S130T","E136L","S162Q","E240K","I242V","T250S","N251D","A253G","T255I","N261T","K265R","K277T","Q316E","N327-","T329K","A334K","N335E","S336H","L341V","I343V","I386L","Q389P","V396I","P412Q","V414I","R416K","E418N","N435-","T471S"],"gp41":["L54M","K56R","R77Q","T96N","T107S","K122R","I130T","N166K","A189T","I193L","D217G","R233T","V264A","E272G","L274-","G275-","R276-","L277-","L288V","S290T","N302S","G326I"],"nef":["V16I","I20M","Q22R","P24R","P25V","D38A","C55S","N157T","R196K"],"p17":["Q58H","M61I","L75I","A83V","I104R","S111N","K112R","Q113R","K114Q","S124N"],"p2":["Q8T","Q9N","S10V","S11-"],"p24":["R154K"],"p6":["I21V","-26N","K27-"],"pro":["L63S"],"rev":["A8P","E32G","Q51H","A68E","L83I","S92-","G93-","T94-","Q95-","S106C","I108S"],"tat":["S7R","L8I","R54P","Q66K","T82A"],"vif":["N22H","F39L","K92N","R93S","I124L","V128I","R132K","L150I","T155E","Q178R","T180I","S186N"],"vpr":["P37V","H45Q","E48N","Q58I"],"vpu":["I20L","V21I","T24S","D44E","-74F","-75N","D78-","N79-"]},"labels":{"aa":"INT: V32I, S57G, I60V, T218I, D288N; RT-p51: D123E, V135K, K174R, I202V, E207K, R211H, E312Q, F346Y, K366R, R390K, A400T, M403T, V435M; RT-p66: D123E, V135K, K174R, I202V, E207K, R211H, E312Q, F346Y, K366R, R390K, A400T, M403T, V435M, H483Y, S554T, K558R; gp120: N1S, -3N, E4-, D34Q, T35P, V37A, H57N, E78G, K89Q, T104H, -115S, -116S, -118S, -121M, S130T, E136L, S162Q, E240K, I242V, T250S, N251D, A253G, T255I, N261T, K265R, K277T, Q316E, N327-, T329K, A334K, N335E, S336H, L341V, I343V, I386L, Q389P, V396I, P412Q, V414I, R416K, E418N, N435-, T471S; gp41: L54M, K56R, R77Q, T96N, T107S, K122R, I130T, N166K, A189T, I193L, D217G, R233T, V264A, E272G, L274-, G275-, R276-, L277-, L288V, S290T, N302S, G326I; nef: V16I, I20M, Q22R, P24R, P25V, D38A, C55S, N157T, R196K; p17: Q58H, M61I, L75I, A83V, I104R, S111N, K112R, Q113R, K114Q, S124N; p2: Q8T, Q9N, S10V, S11-; p24: R154K; p6: I21V, -26N, K27-; pro: L63S; rev: A8P, E32G, Q51H, A68E, L83I, S92-, G93-, T94-, Q95-, S106C, I108S; tat: S7R, L8I, R54P, Q66K, T82A; vif: N22H, F39L, K92N, R93S, I124L, V128I, R132K, L150I, T155E, Q178R, T180I, S186N; vpr: P37V, H45Q, E48N, Q58I; vpu: I20L, V21I, T24S, D44E, -74F, -75N, D78-, N79-"}},"children":[{"name":"MK177826","node_attrs":{"div":0.1587,"accession":"MK177826","clade_membership":{"value":"CRF02_AG"},"country":{"value":"ES"},"date":{"value":2012.0},"Strain_name":{"value":"P3075"},"LANL_subtype":{"value":"CRF02_AG"}},"branch_attrs":{"mutations":{"nuc":["G164A","C200T","C456T","G687A","-714C","-715A","-716A","-717A","-718T","-719C","T788A","G791A","C1060A","G1078C","A1089G","C1098G","A1134G","A1142G","C1342G","A1442C","-1452A","G1553A","G1562A","A1657G","G1848A","A1903C","A1920G","A1990G","T2087C","A2194C","G2224A","A2512T","C2533T","A2557G","C2694A","C2806T","T2873C","T2968C","A2975G","C2976T","A3019G","C3100T","G3188A","G3206T","T3577C","A3685G","G3816A","C3826T","A3982G","A4130G","C4140T","C4288T","G4550A","G4695A","T4701G","A4901C","A4997G","C5221A","T5356C","T5467G","G5468T","C5478T","T5482A","C5559T","C5611A","G5629T","-5824T","C5839T","A5840T","-5861A","G5899A","G5972A","T6025G","-6164C","-6165A","-6166C","G6167A","-6170T","-6171T","-6172C","-6173A","-6174A","-6175C","-6177G","-6178T","-6179A","-6180C","C6189A","A6192G","A6194T","-6195C","-6203A","-6204G","-6207G","-6208C","-6209G","-6210A","-6211A","-6212A","-6213A","-6214A","-6215A","-6216T","-6217G","-6218G","A6221G","G6226A","T6328C","G6329A","A6330G","-6331T","-6333A","-6340C","A6544T","T6694C","A6727G","G6767A","A6790C","C6807T","G6823A","A6858G","-6956G","-6957A","T6958G","A6962G","-6963A","-6964A","-6966A","-6968A","-6969A","-6970C","-6971A","-6972C","-6973T","-6974A","-6975C","-6976C","-6977A","-6978A","-6979C","-6980T","-6981C","-6982A","-6992T","-6994T","-6996C","-6997A","-6998G","-6999A","-7000G","-7005T","A7037G","T7130C","C7155A","A7158C","-7159A","-7161C","T7222C","C7268T","T7462A","T7609C","T7615C","G7688A","T7692C","C7700T","A7701C","G7717A","G8050T","A8152G","A8271T","G8385C","G8387A","T8483C","C8491A","T8506G","C8590A","T8646C","A8652C","A8655G","A8660G","C8740T","A8784G","G8808C","C8809T","G8861A","G8864C","G8868C","A8869C","C8873A","T8923C","A8932T","T8964A","C8990T","A8991G","C8992A","T8993C","G8994A","G9008A"],"INT":["R14K","S119G","T122I","V259I"],"RT-p51":["A200E","T294V","V365I","V371L"],"RT-p66":["A200E","T294V","V365I","V371L"],"gp120":["N3K","-4N","Q34H","V40I","N57E","-105N","-106F","-109S","-110T","-112N","S116T","-119S","-120E","-122E","-123E","Q230H","V305I","K307S","A318V","E335G","-368E","-370E","-379N","-381T","-382N","N383S","-384N","I395V","-435T","H472Y"],"gp41":["H53Q","D129N","N133S","R214G","T290A","Q323L","L340F"],"nef":["A50D","A83E","Y102H","K104Q","K105E","T133I","M148V","A156L","M173I","E174D","E176P","D177E","R194T","E197V"],"p17":["K69G","A118T","-126S","-127Q","-128I"],"p2":["Q6H"],"p24":["T110N","G116A","S120G","P123A","I135V","S200T","A204G"],"pro":["G17E","E35D","K41R","I64M"],"rev":["A15V","E68S","I102V"],"tat":["C31V","L36I"],"vif":["D37N","L39V","Q105H","K160R"],"vpr":["I84T"],"vpu":["Q2K","A8S"]},"labels":{"aa":"INT: R14K, S119G, T122I, V259I; RT-p51: A200E, T294V, V365I, V371L; RT-p66: A200E, T294V, V365I, V371L; gp120: N3K, -4N, Q34H, V40I, N57E, -105N, -106F, -109S, -110T, -112N, S116T, -119S, -120E, -122E, -123E, Q230H, V305I, K307S, A318V, E335G, -368E, -370E, -379N, -381T, -382N, N383S, -384N, I395V, -435T, H472Y; gp41: H53Q, D129N, N133S, R214G, T290A, Q323L, L340F; nef: A50D, A83E, Y102H, K104Q, K105E, T133I, M148V, A156L, M173I, E174D, E176P, D177E, R194T, E197V; p17: K69G, A118T, -126S, -127Q, -128I; p2: Q6H; p24: T110N, G116A, S120G, P123A, I135V, S200T, A204G; pro: G17E, E35D, K41R, I64M; rev: A15V, E68S, I102V; tat: C31V, L36I; vif: D37N, L39V, Q105H, K160R; vpr: I84T; vpu: Q2K, 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L63I; RT-p51: D123S, V135I, E138A, F171Y, R211S, S251N, A272G, V276T, K357R, T369A, V371A, K395R; RT-p66: D123S, V135I, E138A, F171Y, R211S, S251N, A272G, V276T, K357R, T369A, V371A, K395R, Q520L, K524G, E527G; gp120: A2G, -3Q, E4N, S52R, H57P, -105K, -106N, -107T, N108S, -109D, -110A, -111N, -112M, -115N, -116E, -126I, Y145H, K150R, N158Q, A172T, K265R, A291T, T292N, G293D, D294I, D297N, T312S, T319I, H324Y, A334D, N335E, S336P, G351R, E361G, -379N, T380P, -382P, -384D, -386H, Q389T, Q412E, N437K; gp41: I24M, D109E, D113S, K122R, I124V, S125N, D133K, S157G, N166Q, I193V, I222T, F263L, L265S, A267L, A268G, G270S, V271S, E272L, L273K, L274G, G275L, S290A, I311T, W314G, V318I, I321V, I332T, L345I; nef: I10L, A33V, A49P, A50T, D54A, R71K, Y81F, H89F, P150S, E155K, D177E, V182I, R184T, S187R, R188S, F191V, R194K; p17: P66S, Y86F, M107L; p24: L83M, D128E, V191I, V230I; p6: S24A; pro: E35D, L63P, K70R; rev: S5G, E10A, E11D, C82S, C85-, C86-, E87-, G88-, C89-, G90-, T91-, S99G, I108S, S112T; tat: P3L, V29M, K51R, G57R, T58S, V69I, S87Q; vif: K36H, N37K, S46C, R47K, R92K, H110Y, K122Q, R130S, P156L, T159A, K167Q, K179R; vpu: S3P, A7S, V14I, K35I, K37R, R41K, D44N, R45K, -70Y, -71H, -76P, -77L"}}}]},{"name":"CRF02_AG_NODE_0000029","node_attrs":{"div":0.12235,"clade_membership":{"value":"CRF02_AG"}},"branch_attrs":{"mutations":{"nuc":["C467T","T602C","A978T","G1265A","A1278G","A1279G","A1461G","T1676C","G2363A","G3217A","G3220A","A3646G","C5062T","C5168T","G5537A","G5594A","T5796C","-6223A","A6581G","G6668A","-8104T","-8112G","A8424G","T8636A","A8904C","G8915T","T8947A"],"RT-p51":["V90I"],"RT-p66":["V90I"],"gp120":["-105D","N159E","M243V"],"gp41":["D133E","N166K"],"nef":["T28E","F85L","F202Y"],"p2":["I13-"],"p24":["N183G"],"pro":["K70R"],"tat":["R54H"],"vif":["N37G","T159I"],"vpu":["F27Y"]},"labels":{"aa":"RT-p51: V90I; RT-p66: V90I; gp120: -105D, N159E, M243V; gp41: D133E, N166K; nef: T28E, F85L, F202Y; p2: I13-; p24: N183G; pro: K70R; tat: R54H; vif: N37G, T159I; vpu: F27Y"}},"children":[{"name":"MN153486","node_attrs":{"div":0.172,"accession":"MN153486","clade_membership":{"value":"CRF02_AG"},"country":{"value":"CM"},"date":{"value":2008.0},"Strain_name":{"value":"08CMBDSH131"},"LANL_subtype":{"value":"CRF02_AG"}},"branch_attrs":{"mutations":{"nuc":["C193T","T201C","G205A","C213T","G214T","A286G","-303T","-304T","T308G","G365A","T396C","C456T","A470G","C471G","T485G","A500C","A509G","G518A","T525C","A576G","A592G","T593G","T596C","A609T","T641A","A645T","T655C","G656A","G696A","A704C","A705T","G785A","A1088T","A1093C","G1109A","A1142G","C1181A","G1192A","T1244C","A1292T","T1334C","T1335C","T1362C","A1382C","C1385T","-1455A","-1456G","-1457T","T1481C","C1490A","G1553A","G1562A","T1574C","G1589A","C1610A","A1673G","G1687A","C1693T","A1694G","A1701T","T1741C","-1746T","-1747C","-1748C","T1752C","T1754-","C1755-","C1756-","A1766G","G1839A","A1841T","C1865T","A1903C","A1988T","A2038G","A2056G","G2074A","T2083C","T2104C","A2113C","A2203G","G2215A","A2293G","C2335T","C2386T","C2452A","T2453C","A2459G","G2462A","T2488C","G2518A","G2539A","A2545G","C2596T","A2599G","A2629G","T2654C","G2686A","G2707A","G2710A","A2715G","C2749T","C2797A","G2837A","A2839C","C2930T","C2953T","A3028G","A3031C","C3100T","A3165-","T3170G","T3175A","A3230G","C3232T","G3236A","C3253T","A3302C","T3303A","C3322A","T3358G","C3359T","T3380C","T3399C","C3405G","T3433C","T3436C","G3439A","G3448A","T3450A","C3525G","C3542T","T3644A","C3649T","G3664A","G3667A","C3692T","A3703G","G3718A","C3751T","G3768A","A3781T","G3808T","G3846A","C3889T","A3901G","T3904C","T3962A","T3970C","G4063C","T4079C","G4105A","C4123T","G4264A","C4288T","T4428C","A4525G","T4656C","C4679G","T4682C","A4696G","T4702A","A4721G","A4722T","T4724C","G4726A","A4736G","T4738C","T4757C","C4761T","G4855A","T4940G","T4957C","G4968A","T4985C","A5005G","T5018C","A5055G","C5056T","C5102T","G5140A","G5146A","A5161T","A5268C","G5276C","T5314C","T5356A","G5382T","G5385A","C5393A","G5396A","C5412T","G5444A","C5454T","T5462A","G5463A","A5484G","C5491T","C5538T","A5544C","C5559T","C5563G","G5566A","A5567G","T5568C","C5569T","A5574G","A5587G","A5603T","G5620T","A5621G","G5626C","C5627T","G5668A","T5670A","T5687A","G5700A","A5711G","A5728T","G5729T","T5739A","G5748T","C5793T","A5804G","A5806G","-5812G","C5833G","G5838T","A5840T","T5847C","G5848C","T5857-","G5858-","C5859-","T5860-","-5862C","-5863A","-5864G","-5869A","T5911A","G5915A","G5954A","A5957C","G5972A","G6009A","T6025A","A6030T","C6052T","G6055A","A6065G","T6151A","-6163T","-6164A","-6165C","-6166T","-6167G","-6169T","C6181-","A6186-","C6190-","-6222A","-6225G","-6226A","-6229T","A6232G","C6256T","A6262G","C6263A","T6271C","G6274A","G6284A","A6323G","T6325A","-6331G","-6333A","T6343C","C6369T","A6371G","G6392A","A6430C","G6451A","G6463A","A6465G","G6490A","A6500G","G6503A","G6575A","A6578G","A6580G","A6602T","A6604T","A6625G","A6635G","A6636T","A6639C","G6640A","A6648G","A6649G","G6669A","A6682G","G6689A","G6693A","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","T6733A","A6773G","A6775G","C6777A","G6779A","A6788G","A6789C","A6791G","T6793C","C6797T","A6799C","A6809G","A6810T","A6821G","G6823A","T6824A","C6826G","T6827G","-6834A","-6835T","C6838G","A6841C","C6855A","C6859A","C6862T","G6894T","T6896G","C6925T","-6956A","-6957C","-6980G","-6981A","-6982G","-6983A","A6989C","A6992G","-6996C","-6997T","-6998A","-6999G","-7000C","A7005C","C7006A","T7009A","A7030T","G7044A","G7054A","G7072A","T7130C","A7149C","T7150A","A7155G","A7157T","A7158C","T7159A","G7160A","A7162T","A7269C","A7313G","G7315A","G7322T","C7324T","T7325A","G7390A","G7440A","A7462T","T7604A","T7630G","G7640A","C7655T","A7668G","A7673G","G7688C","G7702A","G7712A","G7717A","A7763G","T7774C","C7775T","T7783C","G7790A","A7791G","T7843G","G7846A","A7880G","C7921T","C7936T","C7959T","T7968C","G7977A","C8005A","T8007G","C8009A","A8032T","C8037T","T8047C","C8048A","G8050A","C8051A","C8062T","T8092A","C8106T","G8133A","G8144A","T8167G","A8170G","G8184A","T8205C","C8213T","A8222T","T8256C","A8275G","T8287C","A8288T","T8290C","C8311T","G8354A","G8388A","C8425A","A8446G","G8476C","T8480C","T8483C","C8488G","A8489G","G8490A","G8499A","T8505G","G8506T","G8528A","A8531T","T8568C","G8570A","T8600C","C8601A","A8666C","G8753A","A8754T","C8755G","C8756T","G8762A","A8780T","T8789C","A8795T","G8798T","A8806C","A8812C","T8832C","G8868A","A8869C","C8873A","A8879G","G8885A","A8916G","A8922G","T8923C","A8930C","G8931A","G8933C","C8957T","T8972C","G8977A","A8978C","C8979A","G8991A"],"INT":["L2F","E11D","S24N","L63I","E96D","I218T"],"RT-p51":["E6D","K122E","D123N","I178M","E207G","E248N","E312D","S359A","S379G","V381I","M403Q","V435A","A437G"],"RT-p66":["E6D","K122E","D123N","I178M","E207G","E248N","E312D","S359A","S379G","V381I","M403Q","V435A","A437G","L452Q","T477S","H483Y","L517M","R558K"],"gp120":["A2-","D19E","E21K","D34N","T35P","V40I","S52N","H57Q","E59V","M67I","N71D","T78I","N108-","L137I","V144M","N157E","S160G","A172V","I173V","V180I","E204G","T216A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L2F, E11D, S24N, L63I, E96D, I218T; RT-p51: E6D, K122E, D123N, I178M, E207G, E248N, E312D, S359A, S379G, V381I, M403Q, V435A, A437G; RT-p66: E6D, K122E, D123N, I178M, E207G, E248N, E312D, S359A, S379G, V381I, M403Q, V435A, A437G, L452Q, T477S, H483Y, L517M, R558K; gp120: A2-, D19E, E21K, D34N, T35P, V40I, S52N, H57Q, E59V, M67I, N71D, T78I, N108-, L137I, V144M, N157E, S160G, A172V, I173V, V180I, E204G, T216A, V217I, E241K, I242V, T250S, I257M, N261V, K262T, K265R, V279I, R280H, -282H, -283I, K307E, T308K, E309K, K312A, T313A, Q315Y, T319V, K323E, H324K, F325V, -328K, A334D, N335K, S347I, F348V, -368T, -369N, -370E, -371T, -372N, -373H, -374A, -375A, -379A, E381D, -382R, T385-, R397N, M406I, N432T, N434S, N435S, T436N, H472P; gp41: I4V, V7F, F8I, S101T, D109E, D113N, K122R, I124V, E129Q, E137K, K154E, D163S, I193V, P219L, I222T, G225E, V235G, A245V, L249I, F263L, A268V, A281T, I301T, L304F, I307L, V318A, I329F, L340F; nef: Q15K, V16I, Q35R, S45T, A49G, A50T, A53T, C55V, E63D, L87I, E108D, T138C, E152D, E155A, N157T, E176T, D177E, K192E, R194A, E197N; p1: S9N; p17: L46V, E55D, M61I, T81A, Y86W, I92L, D102E, I104L, M107T, A121S, S124C, S129-; p2: -12V; p24: S14N, N121T, R154K, E187D; p6: S3N, P5L, T8S, I21T; p7: D48E; pro: R14K, I15L, E35D, I64L; rev: A8I, E10A, A15V, I18A, K20R, P30S, A54E, T62S, S67H, A68K, P72S, C82S, S99N, S107A, I108V; tat: E2D, P6H, S7N, Q63E, D64S, H65Y, K71E, T76I, P84S, S87P; vif: F39Y, S46C, R47K, V51A, R90K, I124T, V128I, N140S, T157V, G185E, R187H, H192L; vpr: E55A, I84N, A93S, G94S; vpu: E5*, A7L, V21I, K35R, R41L, D44E, R47S, L61Q, S62E, T63E, M65S, E66T, N69V, -72G, -73D, -74Y, -75D, -76V, -77F, D78V, 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E11D, S24N, M50I, I60V, D167E; RT-p51: V60I, E122K, D123E, I142V, P294T, D335G, K357R, A371V, E399D; RT-p66: V60I, E122K, D123E, I142V, P294T, D335G, K357R, A371V, E399D, V467I, V548I; gp120: K1N, E59T, N64Y, E78T, -106Y, -112T, -115T, E136V, Q142E, Y145H, S146A, K150R, S162E, K203E, E204N, M243K, I244V, I249F, E262K, A288S, D297N, K307R, I332T, N335Q, T345M, G351R, -370S, -372W, -374T, -379N, -380T, -381N, I396V, R401G, V414M, R416Q, E418V, D446N, R448K, K462Q; gp41: L4M, V7L, A14T, Q108W, E137I, S138A, S192T, N212S, P216V, D217A, R221G, D232N, S239N, D247E, S251N, L290A, N298K, I309V, G322A; nef: Q35R, A49P, A50F, G83A, Q107K, E108D, H116N, Y120F, T157N, E158K, I168M, C169S, Q170L, P176S, R178G, L191R; p17: L31M, L68I, T84V, S111K, Q113-; p24: S41T, E180D, S200T, A204G, P207Q, T210S; p6: S3N, P5L, E19-, I21G, S23T, -26P, P36S; p7: -13I; pro: V13I, K20R, P39S, I62V, L63T, E65D; rev: K39R, R50K, R66G, A68P, S107P, V108G, I109L, *117E; tat: L39I, N40T, P59S, T77A, V80E, T82P; vif: N22H, V31I, V66I, H73Q, K92R, I98V, H110Q, V129I, R130I, P131H, T157K, R181K, G185E; vpr: Q77N, V89G; vpu: F16L, T24S, F27L, I43L, E48D, T63A, -74H, -75N, -76P, D78G, -79Y, N81V","clade":"CRF26_A5U"}},"children":[{"name":"CRF26_A5U_NODE_0000001","node_attrs":{"div":0.11493,"clade_membership":{"value":"CRF26_A5U"}},"branch_attrs":{"mutations":{"p17":["K114-","T115-"]},"labels":{"aa":"p17: K114-, 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A21T, N24S, Q136K, G193E, I208L, D256E, D270N; RT-p51: K39N, T107S, A158S, S162A, S173A, A207D, E248D, A272P, K281R, D324E, R357K, A360T, K366R, A376V, V435A, F440Y; RT-p66: K39N, T107S, A158S, S162A, S173A, A207D, E248D, A272P, K281R, D324E, R357K, A360T, K366R, A376V, V435A, F440Y, T450S, E471D; gp120: N1S, T3N, D4-, N5-, I56V, T59P, Y64N, T104N, -107G, -109T, -111A, N113E, -114M, T115N, -124G, N132S, R150K, L151V, P155S, N157D, D159G, N160S, N161G, E183D, K201N, F205Y, P210Q, K212R, T216S, E240K, D251N, N261D, K265N, N267T, N272G, T275R, -282R, -283R, G284-, P285-, G286-, Q287-, S288-, F289-, Y290-, A291-, T292-, G293-, D294-, I295-, G296-, N297-, I298-, R299-, Q300-, R307K, E309D, K312M, K319T, Q320E, N334T, L341P, N358D, T366S, -368P, T371S, -373P, T380S, N381E, -382T, -383N, -384E, A412E, M414E, V418I, L424I, N434S, T437-, T439I, T471S, K472E, K474R, E479Q; gp41: G5A, A6T, Q32K, R46K, K77R, W108F, E110D, D113G, D129E, N133R, I137T, K154Q, D163S, F188C, V190I, I191M, S212Y, G215E, E225G, A245I, F263S, I264L, A290I, I301V, I321L, A325V, C326F, I329V, L330I; nef: E15A, T23A, P24I, D38E, F50D, L58V, E59Q, L76V, S88G, H89F, I133V, A151T, M168L, E174D, R188S, K192R, I194V; p1: N9H; p17: A15S, K28Q, E42D, G49S, E62G, F79Y, V84T, I107L, K111R, K112T, A119T, D121A, S126-, V128-; p2: -12V, I13-; p24: E75D, H87Q, I91V, A105P, T107S, T171A, D187E, R203K; p6: L5I, F15Y, -30P, K31R, -32E, S36N, L38P, V39S, N47K, L50W; p7: Q9P, I12V, K41Q; pro: L10M, I13V, S39A, K69H, K70R; rev: A15T, K30I, T62A, C63H, H82T, Q95I, S103P, G108D, E115K; tat: N7K, Y26H, K29V, P54S, S61N, I69V, K71E, Q76H, A77T, E80K; vif: T20A, K36Q, L59I, G60Q, A62G, I66V, T74P, D78E, H80Q, S86A, R93K, I128N, I130K, A137T, A155E, K157R, T159V, K179R, T188S; vpr: Y15F, P37L, H40Q, E48G, E55V, I61V; vpu: T2P, E5D, V13I, V21I, R37K, L82F"}}},{"name":"FM877777","node_attrs":{"div":0.15237,"accession":"FM877777","clade_membership":{"value":"CRF26_A5U"},"country":{"value":"CD"},"date":{"value":1997.0},"Strain_name":{"value":"97CD_KTB119"},"LANL_subtype":{"value":"CRF26_A5U"}},"branch_attrs":{"mutations":{"nuc":["T12G","G47A","A50G","G52A","T202G","C233T","A305T","G329A","C362T","G428A","C467T","C496G","A497G","A518G","A537C","A554G","C558A","A576G","A592T","T614G","A645G","G667A","-668G","-670A","C679-","C688T","A697G","G706A","G709A","-714A","-716G","-717G","G762A","G791A","A797G","G815A","T861G","A881T","A968G","C974T","G1085A","A1142G","T1143C","G1192A","A1205G","C1235T","C1330T","A1382G","T1421G","T1444C","-1459A","A1475G","C1490A","T1501C","-1503A","A1526G","C1556T","A1562G","G1568A","A1656C","A1692T","G1718C","A1720G","T1729C","C1767A","-1768T","-1783A","-1785T","-1786C","T1791C","A1889C","C1903T","G1912A","A1926G","A2018T","C2129T","A2140T","T2146C","A2203G","A2212G","A2273G","T2278C","C2299T","A2311G","A2419G","C2485T","G2519A","T2542G","A2548G","A2557G","G2567T","T2608C","G2612T","G2683A","G2725A","G2755A","G2833A","G2878A","A2896C","C2909G","G2914C","A2975C","A2984G","A3025G","A3028G","G3029A","C3055T","C3067A","G3097T","G3099A","G3127A","A3216G","A3241C","G3264A","A3293G","G3316A","T3319C","A3481G","T3505G","A3556G","A3578G","A3604G","A3607G","C3610T","G3631A","T3644G","A3684G","C3692T","A3733G","A3768G","T3865C","T3874C","A3925G","A3952G","A3955G","C4006T","A4060G","G4063A","A4219G","G4228A","A4376G","C4381T","A4403T","A4423C","A4433C","G4489T","G4631A","G4673A","T4674C","A4677G","A4693G","A4694G","G4695-","G4696-","T4702A","C4724T","T4769C","A4802G","G4805T","G4855A","C4871T","A4888G","C4890T","T4891C","A4900G","C4902T","G4982T","A5065G","C5091T","C5168T","G5330T","A5355C","C5358A","G5382T","T5391C","C5406T","T5415C","T5466C","C5478T","A5480C","A5491G","C5495A","C5530T","C5537A","C5538G","A5547C","A5548G","A5555G","G5556A","G5565A","C5585A","G5599T","C5611A","C5625T","T5653G","T5654C","T5659A","T5677G","T5686A","A5689G","A5703G","C5751A","-5812G","-5861A","C5862A","-5866A","C5869T","G6002A","A6008G","A6023G","A6024C","C6030T","-6171A","-6173A","-6175G","T6181G","A6185C","C6186A","-6187A","-6189C","C6190-","A6191-","A6192-","A6194-","-6200G","-6201T","-6202A","-6203G","-6204G","-6205G","-6206A","-6207C","-6208C","-6209A","-6210C","-6211A","-6212G","-6213C","-6214A","-6215G","-6216A","-6217G","-6218A","-6219A","-6220C","A6222T","-6223A","-6225C","A6229C","C6241T","G6267A","G6280A","A6335G","-6340T","A6349G","A6403T","C6412T","T6454C","G6463A","T6466C","A6476T","A6478G","G6480A","C6483T","A6488C","A6525G","A6553G","G6569A","A6576G","G6583A","A6595G","A6636C","A6638C","A6648G","T6652C","A6682G","A6734G","T6735A","G6743A","A6751G","C6769T","T6781G","A6800C","G6803A","A6820G","-6833T","A6844G","C6849T","A6858C","T6932A","G6935A","G6936A","C6937A","A6956C","-6966C","-6972A","-6973T","-6976G","-6977A","-6978C","-6979C","-6980C","-6981A","-6982G","-6983G","-6984C","-6985A","C6991T","G7094A","A7124C","A7126G","A7148G","T7150C","A7155G","A7158G","C7164A","A7177G","T7204C","G7225A","A7255G","G7315A","C7322A","T7324G","A7396G","A7463C","C7486T","G7495A","G7513T","G7524A","A7525G","A7531G","A7590C","A7629G","C7678T","A7687T","C7690G","A7700G","G7717A","G7720A","A7722T","A7741G","G7807A","A7818G","A7820G","T7821C","A7832G","A7834G","G7862A","A7885G","G7949C","C7953A","G7962A","G7985A","A8023G","G8036T","C8037T","T8159A","G8160A","T8172C","T8203C","A8219G","A8271G","T8281G","A8282G","G8283C","A8288T","C8291A","C8293T","A8305G","C8351A","T8387G","A8400T","G8402A","A8406C","G8446A","T8456G","A8465G","-8490T","C8491T","T8492C","T8495C","A8564G","C8594G","T8640C","T8700A","A8718T","A8719G","T8720C","A8739G","T8786A","C8794A","A8858G","G8864T","T8870C","T8887A","G8888A","A8892C","C8904A","A8906G","A8909G","G8914T","A8922T","A8924G","T8935A","G8936A","T8939C","C8966A","A8967G","A8970C","G8971T","A8980G","C8989T","T8993C","G8994A","T9019G","T9097G","A9128G","G9132A","A9135G","G9137A"],"INT":["I50M","I201V","T210S","Q216H","I220L","D286N"],"RT-p51":["I60V","V142I","A158S","S251N","T294P","K297E","D312N","D324E","Q334H","G335E","K374R","R390K","T400A","V435I"],"RT-p66":["I60V","V142I","A158S","S251N","T294P","K297E","D312N","D324E","Q334H","G335E","K374R","R390K","T400A","V435I","I495V","L517V","K530R","K558R"],"gp120":["T3K","D4E","D50N","N52D","N57A","T59I","-107K","-109K","-111Q","N113V","-114G","-116T","-117A","-118E","-119N","-120I","-121T","-122D","E125-","R138K","N157D","N161D","E162S","E183D","T208S","G209E","P210L","K212Q","K224R","E239K","E241G","N261A","K262Q","K265R","H280R","D294E","Q315H","K316Q","V317I","P326S","T332I","Q335P","S360T","G361K","-368L","-373N","-375T","-376Q","-377A","-382E","-383N","T385-","N432D","N434S","N435S","T436N","T437N","T471N"],"gp41":["M4I","L7M","M54L","R74K","N96T","D109S","D129E","N133D","N140I","K172R","I173A","I177V","V187I","T192A","V216L","A217D","G220E","E228K","A245F","W286K","T306A","I321V","A322V","Q323R","C326W","R327A","I329F","L330I","F340L"],"nef":["M20L","P24T","R35K","D38E","P49S","L58V","F120I","N126C","I133V","A151D","E174D","M182K","K184Q","R188K","R191L","I194L","L198Q"],"p1":["N9H"],"p17":["M31I","A54G","I61M","I68L","L75I","T81A","Y86F","D93E","I104V","A118V","D121G","S124N","S125N","-127T"],"p2":["V7A"],"p24":["V11I","S44A","Q50H","M118I","R154K","T200I"],"p6":["E13D","N14S","M17T","T22I","-30M","-32E"],"p7":["I12T"],"pro":["T31P","K43R","T74S"],"rev":["P8S","E11A","R14E","R17K","Q24K","S34T","R46K","I59V","C63F","V104E"],"tat":["E2D","Q35P","I39V","T40N","R52W","P54Q","T58A","Q60R","P70Q","E80D","P82T","E85K"],"vif":["M29I","Y30H","I31V","K36R","G37-","F39Y","Q73H","R90K","D101G","L102S","Q105R","R132S","K160R"],"vpr":["I84L","A93S","S96P"],"vpu":["A7S","L16A","L18I","S24A","L27I","I28V","D48E","N69D"]},"labels":{"aa":"INT: I50M, I201V, T210S, Q216H, I220L, D286N; RT-p51: I60V, V142I, A158S, S251N, T294P, K297E, D312N, D324E, Q334H, G335E, K374R, R390K, T400A, V435I; RT-p66: I60V, V142I, A158S, S251N, T294P, K297E, D312N, D324E, Q334H, G335E, K374R, R390K, T400A, V435I, I495V, L517V, K530R, K558R; gp120: T3K, D4E, D50N, N52D, N57A, T59I, -107K, -109K, -111Q, N113V, -114G, -116T, -117A, -118E, -119N, -120I, -121T, -122D, E125-, R138K, N157D, N161D, E162S, E183D, T208S, G209E, P210L, K212Q, K224R, E239K, E241G, N261A, K262Q, K265R, H280R, D294E, Q315H, K316Q, V317I, P326S, T332I, Q335P, S360T, G361K, -368L, -373N, -375T, -376Q, -377A, -382E, -383N, T385-, N432D, N434S, N435S, T436N, T437N, T471N; gp41: M4I, L7M, M54L, R74K, N96T, D109S, D129E, N133D, N140I, K172R, I173A, I177V, V187I, T192A, V216L, A217D, G220E, E228K, A245F, W286K, T306A, I321V, A322V, Q323R, C326W, R327A, I329F, L330I, F340L; nef: M20L, P24T, R35K, D38E, P49S, L58V, F120I, N126C, I133V, A151D, E174D, M182K, K184Q, R188K, R191L, I194L, L198Q; p1: N9H; p17: M31I, A54G, I61M, I68L, L75I, T81A, Y86F, D93E, I104V, A118V, D121G, S124N, S125N, -127T; p2: V7A; p24: V11I, S44A, Q50H, M118I, R154K, T200I; p6: E13D, N14S, M17T, T22I, -30M, -32E; p7: I12T; pro: T31P, K43R, T74S; rev: P8S, E11A, R14E, R17K, Q24K, S34T, R46K, I59V, C63F, V104E; tat: E2D, Q35P, I39V, T40N, R52W, P54Q, T58A, Q60R, P70Q, E80D, P82T, E85K; vif: M29I, Y30H, I31V, K36R, G37-, F39Y, Q73H, R90K, D101G, L102S, Q105R, R132S, K160R; vpr: I84L, A93S, S96P; vpu: A7S, L16A, L18I, S24A, L27I, I28V, D48E, 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I31V, A91T, E96D, T122I, V135I; RT-p51: S105A, P176T, I178L, G196S, A200V, R211K, T215Y, P294T, D312T, K357R, V365I, A376T, R390K, T403A; RT-p66: S105A, P176T, I178L, G196S, A200V, R211K, T215Y, P294T, D312T, K357R, V365I, A376T, R390K, T403A, S491L, D511E, L517I; gp120: R18K, E21D, T23I, V56I, H77Q, T100I, -107N, N108T, -109S, -111H, -112S, -113N, -114S, -115S, -116S, -117T, -118Q, -119S, -120I, -121N, -122E, M133T, E136I, K138R, K150R, I156L, N157D, D159K, T160N, N161T, V172T, K203P, E204R, R224K, E241G, V242K, M243I, D251N, E262K, Q265L, N267T, T269I, D293E, S306N, E309L, V318A, H324K, N327K, N334T, L341P, H346L, G351A, S365G, -368W, -370N, -372P, -381N, -382G, D384-, T385-, T387I, V414I, M424I, N435G, S436T, T437N, I463L, K472R, R474K; gp41: I24L, K46Q, Q77K, T94A, S101T, T107S, D129N, T130I, N157D, N160S, D163N, T165S, N166H, K172R, I188F, S192T, L204V, N212S, G220R, R221G, I222T, S239N, L242F, Y284N, C326F, F340L; nef: S8R, V11P, V16I, A26T, E28Q, G29R, R40H, L58V, Y81F, H89F, 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L82V"}}},{"name":"GU201516","node_attrs":{"div":0.15535000000000002,"accession":"GU201516","clade_membership":{"value":"A2"},"country":{"value":"CM"},"date":{"value":2001.0},"Strain_name":{"value":"01CM_1445MV"},"LANL_subtype":{"value":"A2"}},"branch_attrs":{"mutations":{"nuc":["A412G","C426A","T466A","C482T","A497G","G508A","A530T","C531T","A541C","A543G","C544T","T567C","G595A","G608A","T635C","A645T","A653G","A656G","C666T","A697C","C707T","A725G","A764G","A779G","G821A","C884T","A941G","A1202C","G1256A","G1271T","C1280T","T1329A","C1331T","T1335C","A1343G","G1354C","A1404G","T1421C","G1443A","A1448C","C1460T","A1461G","G1487A","A1492C","C1571T","T1646C","T1653C","T1676C","T1682C","A1709G","T1722G","A1743-","C1744-","C1745-","-1746G","-1748T","C1755T","-1770A","-1771G","-1772A","-1773A","-1774A","-1783A","-1784A","-1785C","G1791A","A1804G","C1853T","T1873C","A1900G","C1903T","A1926G","T1954G","A1993G","G2001A","G2065A","A2215C","C2266T","C2456T","C2485T","C2488A","C2499T","C2589T","T2737C","A2764G","A2839G","A2875G","A2918C","G2932A","A2937G","C2978T","G2980A","A2985G","T3072C","A3088G","A3091G","A3097G","T3170A","C3175T","C3222T","A3259G","G3304A","T3358C","A3386C","C3399T","A3448G","G3457A","A3522G","C3541T","G3556A","T3567C","T3598C","A3665G","G3674A","G3686A","C3712T","T3755A","C3756G","G3766A","C3908T","G3925A","G4060A","G4063A","C4072T","G4267A","C4288T","G4353A","A4354C","T4471G","G4549A","C4569T","G4696A","T4697G","T4706C","A4709G","A4717T","G4735A","G4766A","G4769A","C4820A","G4864A","T4868C","A4895G","A4968T","G4981A","G5099A","G5143A","C5168T","G5226A","C5228T","C5250T","G5330A","G5382A","G5418A","A5432G","G5448T","A5461G","A5462T","G5463T","A5471G","T5472G","C5491T","A5561G","A5581G","C5584T","A5587G","G5602A","T5611C","A5613G","A5655C","G5692C","G5700A","A5701G","A5704C","G5775A","G5864-","A5865-","G5902A","T5944A","C5958G","G5965A","A6001T","A6023G","G6029A","G6079A","G6099A","A6120T","T6134C","T6155C","A6167G","T6169A","C6171T","C6172T","-6175A","-6176G","-6177A","-6178T","-6179A","-6180A","A6186C","-6187G","-6189A","C6190-","A6191-","A6192-","T6193-","A6194-","G6195-","C6196-","A6197-","T6199-","G6224-","A6232G","A6248T","A6249T","T6250A","A6254C","A6281G","A6304G","G6311A","G6323A","G6330A","A6333C","T6334G","A6335C","T6337G","-6339C","A6353C","A6354G","T6382C","G6391A","A6466G","A6488C","A6489G","C6534T","G6573A","G6577A","G6593A","T6598C","A6599T","G6731A","T6735A","T6760C","A6776G","A6781C","A6789T","C6790T","G6809A","A6818C","G6819A","A6820C","G6821A","A6822G","A6823C","-6830C","-6831C","-6832T","C6833A","C6834A","A6836G","A6837C","A6840C","A6858G","T6860C","A6921T","C6938T","T6943C","G6952A","-6956A","-6957C","-6962A","-6964C","-6967A","-6971A","-6973A","-6974A","-6976G","-6977A","-6978T","A6980G","-6981T","C6983T","A6986-","A6987C","C6991A","C6993G","C7008A","C7020A","G7026A","A7036G","C7107T","C7114T","T7117C","A7126G","A7129C","T7150G","-7151C","-7153C","A7154-","A7155-","C7156-","A7163T","A7177G","G7256A","T7323C","C7324T","A7345T","T7462G","C7498T","G7517A","G7519A","A7553C","C7576T","C7597T","G7621A","C7623A","G7628A","A7629G","G7631C","C7658G","A7660G","A7672G","C7690A","G7701A","G7702A","A7714C","T7748G","A7791G","G7857A","C7869T","A7874T","G7883A","A7918G","T7921G","A7937C","C7960A","G7962A","G7970A","G7992A","G8001C","G8005A","A8006G","C8047T","T8089C","T8097C","G8117A","A8118C","A8143G","C8147A","A8204G","G8208A","T8213G","A8219G","G8231A","T8243G","A8264C","G8276A","C8277T","G8304C","C8323T","A8335G","G8349A","G8354A","G8356T","A8364-","G8365-","A8367-","G8368-","C8369-","A8370-","T8371-","A8372-","G8373-","T8374-","G8375-","T8390C","C8455G","G8476T","A8478C","C8499T","T8504C","G8534T","T8568C","C8666A","C8676T","A8693G","T8720C","A8739G","A8744G","A8746T","G8787A","A8852G","A8893G","G8905A","G8933A","C8937T","G8945T","T8972C","G8977A","C8979A","T9012C","T9017G","T9095C","G9096T","G9099A","G9132A"],"INT":["M50I","G193D","D232E","A265V"],"RT-p51":["E40D","H121Y","T135I","T165I","S173T","K275Q","K281R","K297R","D312N","I326T","S359T","A376V","K431Q","A435V"],"RT-p66":["E40D","H121Y","T135I","T165I","S173T","K275Q","K281R","K297R","D312N","I326T","S359T","A376V","K431Q","A435V","K476R","K524E","E527K","V531I"],"gp120":["D4N","T35R","N57D","E59K","S82N","K89M","N105E","A106V","-107K","N108D","-109N","-111T","-112K","I126M","N132L","T134P","K143E","V153I","N161Q","S162P","N167R","E204K","K212R","A227V","G240E","E247K","I249F","D293N","I294K","T308A","E309D","D312V","E319K","R322H","E323S","-328A","K329T","N335S","S336P","Y356F","-368T","-370S","-372W","N378-","T380E","-381R","-382E","T385N","P389Q","R391K","T418I","N432K","-433R","N435D","T437S","V468I"],"gp41":["V7A","H53Q","V72I","I84L","T107N","D109S","E110Q","Q119E","D129E","R133K","E137D","L149V","D163S","R185K","A189V","I191F","V194I","F206L","N212R","P216L","G220E","E223K","G230D","R233T","I235V","L265S","E272T","L282I","I301V","S302N","F304V","T306A","A310T","W314G","I321L","A325I","R334T"],"nef":["G3S","W5L","S8-","S9-","I10-","V11-","A38G","S45I","S46R","P53S","E64S","D108E","I133V","Y135F","D149N","K184R","R188H","H199Y","E201D"],"p1":["S8P"],"p17":["K26R","L31M","F44Y","R58K","Q65H","P66S","T70V","I104L","H111Y","D121A"],"p2":["V7-","Q8-","N9-","T10-","N11-"],"p24":["E180D","S200T","G208A","S225G"],"p6":["L15V","T22A","-32N","-36H","P37T","A38P","I39T","K42R"],"p7":["Q9P"],"pro":["K43R","G68E","M89I"],"rev":["R14K","I16V","K30T","R41Q","Q51H","D53S","P67S","G90D","R99G","P100H"],"tat":["K19R","K24N","K29V","Y32W","G57R","N62S","I69V","P70S","K71E","Q76H","P84Q","E85K"],"vif":["G37E","Y44F","R50K","D78E","R93K","I128L","R132K","S186N"],"vpr":["G41D","N48D","T49I","A93T"],"vpu":["E29Q","K32E","I33L"]},"labels":{"aa":"INT: 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Y135F, D149N, K184R, R188H, H199Y, E201D; p1: S8P; p17: K26R, L31M, F44Y, R58K, Q65H, P66S, T70V, I104L, H111Y, D121A; p2: V7-, Q8-, N9-, T10-, N11-; p24: E180D, S200T, G208A, S225G; p6: L15V, T22A, -32N, -36H, P37T, A38P, I39T, K42R; p7: Q9P; pro: K43R, G68E, M89I; rev: R14K, I16V, K30T, R41Q, Q51H, D53S, P67S, G90D, R99G, P100H; tat: K19R, K24N, K29V, Y32W, G57R, N62S, I69V, P70S, K71E, Q76H, P84Q, E85K; vif: G37E, Y44F, R50K, D78E, R93K, I128L, R132K, S186N; vpr: G41D, N48D, T49I, A93T; vpu: E29Q, K32E, I33L"}}}]},{"name":"A2_NODE_0000002","node_attrs":{"div":0.11695,"clade_membership":{"value":"A2"}},"branch_attrs":{"mutations":{"nuc":["G279A","G480A","A562G","C734T","C1767-","A2612G","G3168A","A3565G","G3574A","C4428T","A5159G","C5263T","G5482A","T5483G","A6044G","-6175C","C6184T","-6187C","-6189C","-6198C","-6225A","A6464G","G6575A","C6636A","A6648C","-6956G","-6957A","A6980C","-6985A","-7151A","A7155G","A7790G","C7801A","C8189T","T8292G","T8387G","C8494A"],"RT-p51":["S173A","R358K"],"RT-p66":["S173A","R358K"],"gp120":["N64D","D159S","E241K","T261N","Q265P","-368E","-381E","-382S","-433S"],"gp41":["N166K","P216L","L330R"],"nef":["T51N"],"p17":["G49S","K76R"],"rev":["T114I"],"tat":["V36R"],"vpr":["M19V"]},"labels":{"aa":"RT-p51: S173A, R358K; RT-p66: S173A, R358K; gp120: N64D, D159S, E241K, T261N, Q265P, -368E, -381E, -382S, -433S; gp41: N166K, P216L, L330R; nef: T51N; p17: G49S, K76R; rev: T114I; tat: V36R; vpr: 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T91-, S92-, R99G, S103P; tat: S31C, R53K, Q63K, P75S; vif: K36T, Y44F, H48N, V51A, R63K, T74P, K92R, I98L, V102T, P131C, S132R, E134D, Q136P, L153I, R181K; vpr: A55T, I61T, I70T, Q77R, P96S; vpu: H5Q, I30V, -76L"}}}]},{"name":"CRF35_A1D_NODE_0000013","node_attrs":{"div":0.12825999999999999,"clade_membership":{"value":"CRF35_A1D"}},"branch_attrs":{"mutations":{"nuc":["A903G","G986A","A1123G","G1794A","A5431G","G5461A","C5469T","-6170G","-6171T","-6172C","C7164A"],"gp120":["H280R","T371-"],"gp41":["M24V"],"p24":["I58V","G120N","K131R"],"rev":["R14K"],"tat":["T19A","N23S"],"vpu":["-76L"]},"labels":{"aa":"gp120: H280R, T371-; gp41: M24V; p24: I58V, G120N, K131R; rev: R14K; tat: T19A, N23S; vpu: 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V29K"}},"children":[{"name":"AB703613","node_attrs":{"div":0.16343,"accession":"AB703613","clade_membership":{"value":"CRF35_A1D"},"country":{"value":"IR"},"date":{"value":2011.0},"Strain_name":{"value":"11IR.SYZ33F"},"LANL_subtype":{"value":"CRF35_A1D"}},"branch_attrs":{"mutations":{"nuc":["C435A","T479C","A495G","T525A","T575C","A585G","C586T","T635A","T662G","C679T","A699C","A712C","A735G","A762G","T771G","G776A","A810G","G980A","A986G","G1199A","C1214T","G1242A","T1280A","A1337G","A1340G","T1344C","A1350C","A1370C","T1444C","T1502C","G1725A","A1804G","G1835A","A1932G","G1972A","G2127A","A2140G","C2199T","A2233G","C2335T","A2374G","A2398G","G2431A","T2494C","A2519G","T2542C","A2592G","C2635A","C2653T","T2719C","C2720T","A2770G","T2829C","G2830A","G2932A","C3020A","A3037G","G3046A","T3118A","A3124G","T3207G","A3221G","C3252T","A3283G","A3292T","T3412A","T3436C","G3442A","C3653A","G3671A","A3675G","G3679A","A3756G","A3775C","G3793A","G3844A","T3856C","T3909A","A3979G","C4021G","A4054G","T4110C","C4144T","A4156G","T4282A","A4303G","A4333G","G4388T","A4399G","A4402G","G4631A","G4689A","G4695A","G4696A","A4708G","A4721G","C4728A","G4774A","A4951G","G4968A","A4988C","T4991C","A5005C","A5039G","C5050T","A5055G","C5102T","G5161A","T5237C","T5313C","A5335G","A5395G","G5448T","G5463A","T5467A","A5557G","C5563A","C5585A","G5602A","C5611T","G5692C","A5701G","G5712A","T5727C","A5737C","T5781C","T5808G","T5862C","A5866T","A5867-","A5868-","T5869-","T5878C","T5881A","A5926C","G5948A","A5957G","G5963A","A6159C","T6160G","T6171C","C6172T","-6174A","-6175T","-6176A","-6181T","C6187T","A6188G","C6190T","-6195C","-6196T","-6198C","-6199C","-6202A","-6203G","-6204C","-6205T","-6207C","-6208C","-6210A","A6222G","T6252C","A6275C","A6303G","A6318C","T6328A","A6330G","A6335G","G6336A","C6511T","G6550A","G6575A","A6596G","T6598A","A6647C","T6656G","C6661T","T6688C","C6717T","C6729G","A6730G","T6733G","C6758T","A6773G","G6774A","C6781A","A6797G","A6801G","T6808C","A6809G","C6810A","T6849A","C6850T","A6880G","A6934G","G6935A","-6956T","-6958T","G6965-","C6967-","C6970-","-6971G","-6972G","-6973C","-6974A","-6975G","-6976C","G6977A","A6992-","C6993-","A6999C","A7005G","C7008T","C7014A","T7015A","C7024T","T7047C","T7107A","T7147A","A7151G","A7155C","G7158A","A7164C","G7269A","G7307T","G7322T","A7328G","C7597T","C7603T","A7628G","A7713T","T7715G","A7772G","A7782G","T7796A","A7818G","T7827G","A7887G","T7888G","G7943A","A7978C","G7980A","C8104T","G8116A","C8123G","A8191G","T8209C","G8213A","A8264C","T8278G","A8284G","T8337A","G8338A","T8384A","A8396T","A8429C","A8459G","G8508A","G8534T","A8540G","C8568T","A8576T","T8595A","C8603A","A8617G","C8687T","T8740C","A8770T","A8780G","T8789G","T8795G","A8812C","A8837G","G8870A","A8929T","A8970G","G8981A"],"INT":["L45Q","I112T","A205S","I208M","D286N"],"RT-p51":["R11K","T35I","I142V","K166R","M245T","L309I","V371G","T376A","T386I","E399D"],"RT-p66":["R11K","T35I","I142V","K166R","M245T","L309I","V371G","T376A","T386I","E399D","Q520K","V526I","N554S"],"gp120":["V3A","E4D","N5-","A32T","T35A","V37M","N102T","-109I","-113M","-114R","-115E","M133T","K141Q","K150R","Q155P","D159G","S161D","E241K","N248E","T265P","C268G","A288V","T292R","D293E","H302Y","R307E","R315G","Q316R","T319E","I332N","G361S","-368Y","-371G","-373K","-374E","-375L","-376N","N378A","T380G","-381I","D384-","T385-","T387K","M398T","V418E","N433D","N434T","E436Q","N437T","R472K"],"gp41":["V2F","V7L","I9V","N109D","E137V","S138A","N160S","S165T","K172R","I175R","N195R","G214R","E225D","G226D","L274V","V304I","I321L","F325L","L345Q"],"nef":["E18D","G31E","V33A","A56T","E64D","F85I","K92R","V133T","Y143F","D149E","N157T","Q196L"],"p17":["L34I","T54A","L64I","T84V","N109K","A115V","T122P","K126T"],"p2":["V7A"],"p24":["I2V","I11V","S14A","I27V","L83I","V171T","T207P","E213D"],"p6":["G16R","K42R"],"pro":["V13I","K45R"],"rev":["Q24K","R32K","R86C","G90R","S92C","K115E"],"tat":["N7D","K24N","S61G","Q63K","P70Q"],"vif":["A35T","G37N","K41R","H48N","R63K","K122R","V128I","E134D","N140T","T155I","T157A","C192Y"],"vpr":["M19I","Y45H","I70T","Q77R"],"vpu":["L2S","E29Q","R32G","K44Q"]},"labels":{"aa":"INT: L45Q, I112T, A205S, I208M, D286N; RT-p51: R11K, T35I, I142V, K166R, M245T, L309I, V371G, T376A, T386I, E399D; RT-p66: R11K, T35I, I142V, K166R, M245T, L309I, V371G, T376A, T386I, E399D, Q520K, V526I, N554S; gp120: V3A, E4D, N5-, A32T, T35A, V37M, N102T, -109I, -113M, -114R, -115E, M133T, K141Q, K150R, Q155P, D159G, S161D, E241K, N248E, T265P, C268G, A288V, T292R, D293E, H302Y, R307E, R315G, Q316R, T319E, I332N, G361S, -368Y, -371G, -373K, -374E, -375L, -376N, N378A, T380G, -381I, D384-, T385-, T387K, M398T, V418E, N433D, N434T, E436Q, N437T, R472K; gp41: V2F, V7L, I9V, N109D, E137V, S138A, N160S, S165T, K172R, I175R, N195R, G214R, E225D, G226D, L274V, V304I, I321L, F325L, L345Q; nef: E18D, G31E, V33A, A56T, E64D, F85I, K92R, V133T, Y143F, D149E, N157T, Q196L; p17: L34I, T54A, L64I, T84V, N109K, A115V, T122P, K126T; p2: V7A; p24: I2V, I11V, S14A, I27V, L83I, V171T, T207P, E213D; p6: G16R, K42R; pro: V13I, K45R; rev: Q24K, R32K, R86C, G90R, S92C, K115E; tat: N7D, K24N, S61G, Q63K, P70Q; vif: A35T, G37N, K41R, H48N, R63K, K122R, V128I, E134D, N140T, T155I, T157A, C192Y; vpr: M19I, Y45H, I70T, Q77R; vpu: L2S, E29Q, R32G, K44Q"}}},{"name":"EF158042","node_attrs":{"div":0.15244,"accession":"EF158042","clade_membership":{"value":"CRF35_A1D"},"country":{"value":"AF"},"date":{"value":2005.0},"Strain_name":{"value":"05AF104"},"LANL_subtype":{"value":"CRF35_A1D"}},"branch_attrs":{"mutations":{"nuc":["A480G","T525C","C531T","A554G","A615G","A619G","A711-","A712-","G716-","T892C","A978C","C1243T","G1301A","G1355A","G1493A","A1580G","A1592G","A1670G","T1676C","-1746C","-1747C","-1748T","C1749-","C1750-","C1751-","A1794G","T1796C","C1807T","A2007G","A2126G","C2296T","G2320A","A2422G","C2499T","A2551G","A2617G","A2828G","C2848T","A2951G","C3023T","A3193G","G3205T","C3222G","T3262C","C3394A","G3398A","G3556A","T3559C","A3644G","G3664A","A3665G","G3674A","A3775G","A4175G","A4183C","G4243A","A4384G","G4673A","T4674C","T4730C","A4923C","C4943T","T4959G","T4982G","G5040A","A5215G","T5245C","C5251T","T5252C","C5293G","G5305A","T5357A","G5431A","A5447G","G5448A","T5478C","A5481G","G5482T","T5484G","A5548G","C5612T","T5613G","G5652A","G5671A","T5672C","T5688C","G5702A","G5711A","G5739A","T5748G","T5781A","C5911A","C5920T","T5953C","C5974T","T6025G","G6029A","A6067C","C6148T","T6160A","T6163C","G6170T","-6174C","-6175C","-6176T","-6181C","C6183A","C6184T","A6185T","A6186T","-6195A","-6196C","-6198A","-6199T","A6200T","-6202C","-6203A","-6204A","-6205C","-6207A","-6208G","-6210G","A6214T","A6215G","C6216A","G6217C","A6219T","G6314A","T6315C","C6317G","T6334G","A6379G","G6460A","A6478T","T6482C","A6490C","A6508G","A6525G","A6605G","A6628G","T6641A","C6660G","A6682G","G6693C","C6729T","A6732G","G6779A","C6812A","A6821G","A6875G","G6913A","C6937A","-6956A","-6958A","A6960T","-6966C","-6968A","-6969G","-6994A","-6995A","-6996A","-6997T","A7000C","A7005T","C7006A","A7066G","C7124A","A7135C","A7149G","A7154G","T7156A","A7161T","G7162A","T7408G","G7640A","T7666G","A7688G","G7712A","A7771G","A7773G","A7790G","G7791A","A7886C","C8047T","G8152A","A8314G","A8407G","A8424G","A8474C","A8484G","A8536G","G8573A","A8688C","C8702T","A8739G","T8747C","A8794T","A8819C","A8876G","T8947A","G8977A","C9047T"],"INT":["S134G","Q136H","I203M"],"RT-p51":["R11G","T135I","M245V","T286A","E370D","T376S","V435I"],"RT-p66":["R11G","T135I","M245V","T286A","E370D","T376S","V435I","I517V","K524E","G527K"],"gp120":["D19E","H57Q","E59K","K71N","N102K","-109F","-113N","-114S","-115N","-116K","-117S","-120I","-121D","-122M","-123K","-124E","V154T","Q155E","D159E","N160K","S210P","K212N","K224R","N251D","S263T","T269S","R280P","T292I","D293G","I294D","E309N","Q320K","K323E","I341V","-368K","N369I","-371A","-375E","-376E","S377L","N379S","-381N","-382D","-383N","D384V","L424I","N432R","N433V","N435-","N437S"],"gp41":["D113N","D121E","N129D","E137K","D157S","S163D","N195H"],"nef":["Q22R","K28E","I48V","E65G","F85L","N116H","E151V","E159D","F202Y"],"p17":["S49G","P66S","I94V","K95R","K126-"],"p24":["M54T"],"p6":["T39A","S43L"],"pro":["K70R"],"rev":["P67S","V102I"],"tat":["A19T","K24R","S31C","V36L","T58A"],"vif":["M29I","Y30H","N113H","L125V","S132R","A152T"],"vpr":["Y50H","I63M"],"vpu":["L4S","H5L","V22T","R32K","R35K","S47R","D58E"]},"labels":{"aa":"INT: 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D58E"}}}]}]},{"name":"CRF35_A1D_NODE_0000016","node_attrs":{"div":0.12886999999999998,"clade_membership":{"value":"CRF35_A1D"}},"branch_attrs":{"mutations":{"nuc":["T5384C","T5467A","-6173A","-6174A","-6175C","C6183-","C6189-","-6210A","A6283G","A6875G","C6949T","T8746A"],"gp120":["I341V"],"nef":["F135Y"],"tat":["L3P"]},"labels":{"aa":"gp120: I341V; nef: F135Y; tat: 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Y121D, E122K, T135I, T165I, M245T, K277R, P294S, V317A, T376A; RT-p66: Y121D, E122K, T135I, T165I, M245T, K277R, P294S, V317A, T376A, S468P, Q520K; gp120: D19E, Q54R, E59Q, T78E, N102T, -105N, -106A, -107N, -109D, T110S, -112T, -113N, -114N, -115D, -116S, -117K, -118I, -119E, -120D, -121M, -122V, -124G, Y145Q, Q155P, G158D, I243V, N251D, S263T, E309A, N311K, R315E, A318K, I332L, N335D, G351R, S365N, T366S, W367L, -368F, -370S, -371S, -372G, -373E, -374S, -375D, -376S, -377T, N379-, D384-, T385-, N432A, N434E, N437S, R472K; gp41: V7L, R46K, K56R, V72L, K77R, N107T, S109N, D113N, N126S, A151T, K172R, H209L, P213Q, D217G, G230D, H259R, I264S, A268R, V304I, E320D, N331H, R342G; nef: I10K, V11K, G12E, R17K, R19K, A23T, K28E, A56T, A60T, E62Q, Y81F, F85L, K94Q, E151A, A156D, L191F, K192T, R194K, Q196R; p1: K10N; p17: S9R, A15T, Q117K, A118T, S124-, K126G, -127K; p2: V7A; p24: Q50G, H87Q, R203K; p6: S3G, T22K; pro: I15L, L63A; rev: A15G, V16I, K30E, H82Q, R86Q, S103F; tat: A19P, K24N, V29I, 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I10K, V11I, G12E, P14T, V16I, I20M, Q22R, K28A, G29T, S45N, A84G, L85V, I101V, R104K, H116N, D149E, E152D, M182V, R188L, R194I, H196R, F202Y; p1: I5L; p17: R26K, K28Q, L31M, S49D, L68I, T115A, N124S; p24: I2V, V3M, A14N, A31G, S33N, M54L, H87Q, G120S; p6: T22V, K42R; p7: M1V, R7K, K10N; pro: V13I, K45R, L63S, I64M, K70R; rev: A15T, L22I, K32E, S34T, K39R, D53N, T94E, Q95G, G96-, V97-, G98-, R99-, S103P, S106P, S107H, K115Q; tat: N7D, T58S, Q60Y, S61N, K63E, P68H, S73P, Q78R, V80D; vif: M8L, V13I, R19K, N22H, M29K, V31I, G37N, F39V, R41K, Y44F, H48N, V51I, S52C, R67K, D78A, V85A, K92R, R93E, S95R, L109T, D113T, D117E, S130R, A137T, K176E; vpr: Q3R, P37I, I84V, R85P, V89G, S93P, S94G; vpu: S2R, I10T, L16I, I18L, V21I, K32R, K38R, E44K, I46L, R47G, D58E, D62A, E63A, L64I, A65M, D78-, N80-, N81-, 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V113I; RT-p51: T39K, S123D, T135I, I179V, A272P, T294P, M377T, T400A, D404E; RT-p66: T39K, S123D, T135I, I179V, A272P, T294P, M377T, T400A, D404E, G527E, D529E; gp120: S1N, -124G, K141R, K150R, N327-, T380A, R416K, T436A; gp41: I4M, R214E, I309V, I325A; nef: Q22R, I43V, I48T, N49A, H50A, P51T, S52N, R104Q, E108D, H116N, E151A, K155E, R178K, T180V; p24: P111L, K154R, G183N; p6: F15L, P24S; pro: K57R; rev: K32R; tat: N40K, G79R; vif: S130R, P183H; vpu: V13I, 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D25E, M50R, G59E, V72I, I84M, A124N, N134G, T206S, T218I, I234V; RT-p51: K39N, K49R, E122K, I135V, S162C, E177D, T200A, A207T, S211K, K281R, D291E, E297K, D312E, I326V, D335E, R356K, V376I, T377L, I380V, V381I, W410C, K431R, V435I; RT-p66: K39N, K49R, E122K, I135V, S162C, E177D, T200A, A207T, S211K, K281R, D291E, E297K, D312E, I326V, D335E, R356K, V376I, T377L, I380V, V381I, W410C, K431R, V435I, Q483K, S491P, R512K; gp120: E4D, D19E, E21R, D34E, V40I, A42V, E59G, E64K, N71D, Q86E, N108-, -123K, L137I, R141-, K142-, K143-, V144-, Y145-, S146-, L147-, F148-, Y149-, R150-, L151-, D152-, V153-, V154-, Q155-, I156-, N157-, N158-, N159-, N160-, S161-, S162-, Y163-, R164-, L165-, I166T, I173L, F195Y, P210L, E240G, I249L, D251N, T255N, P263S, K265T, Y290A, A291T, T292G, D294I, E309N, N311I, Q315K, K316R, K319G, Q320E, E323Q, -326K, -327N, T330I, N335S, S360T, G361A, T366S, -368N, T371-, P389Q, L425I, N433-, N435S, A436G, N437T, K462E, I463V, K474R; gp41: I24V, L54M, K56R, K77Q, K106R, S107T, E109A, Q119D, K122R, S125N, I130T, S133R, N157S, D163G, I193V, T208I, N212S, I222T, E225G, D232S, I235T, V238A, A243T, L282I, L290I, R294Q, I298T, T306A, I307V, I321V, Q323H, C326W, I329F, L340A; nef: G3N, S9R, I10R, P25V, E28T, Q35R, S45T, A49P, -53E, -54A, R71M, Y89F, I101P, Y120F, I133V, C142L, F143Y, D149E, P150Q, A151E, V153I, E155K, E176P, M182L, S187R, R188H, L191I, R194T, F202Y; p17: L31I, S49G, E55Q, M61I, K69Q, D93E, Q108K, Q113N, D121A, N124S, K127N, Q130H; p2: T8Q, N9Q, -10T, -11N, -12I, I13M; p24: Q4T, H12Y, A31G, S33N, I91A, L111P, I115V, E180D; p6: K31R, P36A, P49Q; p7: K10G; pro: L10V; rev: Q24K, R50E, D53N, S54A, S61N, P67S, E68K, L78I, P100H, S103P, V108D, I109L; tat: N7D, N12K, A21P, N23T, C31S, Q35P, Q54L, I69V, P70Q, P73S, T77A, S87Q; vif: G37K, F39Y, S52C, R67I, D78E, S86A, L109Q, D117E, Q127E, V128I, P177H, R181M, C192*; vpr: Q8H, L20I, I61T, V89T; vpu: T2S, E5Q, E29Q, K32R, L33I, K35R, Q36D, R41W, I43V, E44R, E56D, -69V, -70E, -71M, -72G, -73D, -74Y, -75N, -76L, -77L"}}},{"name":"KU168256","node_attrs":{"div":0.16321,"accession":"KU168256","clade_membership":{"value":"A1"},"country":{"value":"CD"},"date":{"value":2002.0},"Strain_name":{"value":"LA01AlPr"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["T10G","G49T","A66G","C93A","A149G","C150T","G162T","A171T","T301A","-304A","C435T","G495A","A521C","G524A","C531T","A548G","A585G","C586T","A653G","A660G","T662G","G702A","A725G","T763C","T808C","A810G","G821A","T852A","G908A","C974T","T978G","T992G","A1017C","A1022G","C1063T","T1094C","G1109A","C1115A","C1137T","T1181C","A1196G","C1220T","C1243T","G1256A","A1270C","G1271A","G1313T","T1334C","T1358C","A1359T","G1388A","G1404A","C1449G","A1450G","T1481C","A1499G","G1586C","C1613T","G1657A","A1670G","G1724T","-1746C","-1748T","T1749-","C1750-","C1751-","C1775G","A1776-","G1777-","G1778-","G1779-","A1780-","A1781-","A1783C","G1784T","-1785C","A1846G","A1907G","G1963A","A1966G","T1986A","T1987A","A2023C","T2071A","A2113G","A2127T","A2128G","A2211G","A2254G","C2299T","C2326T","T2365C","A2422G","T2440C","G2456T","G2509A","T2542C","T2581C","T2612G","C2635T","A2645G","A2665C","G2682A","G2705A","A2710G","T2776C","C2806T","G2833A","C2909G","G3029A","A3046C","G3093A","G3094A","A3097C","A3099G","C3159G","A3165G","C3178T","A3192G","T3222G","A3230G","G3250A","T3308C","A3334C","T3358C","G3385A","A3400G","G3448A","C3449A","A3451G","A3484G","G3490A","A3503G","T3517C","A3524G","T3544G","C3550T","C3567T","A3637G","T3644A","A3685G","G3694A","C3773T","T3779C","T3844C","T3904C","A3919G","T3943C","G3952A","A3964G","A3991G","C3995T","G3997A","T4135C","A4178G","C4201T","C4258A","A4419G","T4471C","A4567G","A4570T","G4573A","G4582A","C4645T","A4650C","A4694G","A4760G","C4761A","G4774A","A4781G","C4820T","G4870A","C4871T","A4878G","C4898T","C4911T","G4923A","C4925T","A4993C","G4995A","A5000C","T5018C","C5034T","A5049G","C5052T","C5056G","C5062T","T5084C","A5134T","A5136C","G5137A","A5150C","T5152G","G5179A","G5185A","A5191G","T5203C","A5210C","C5221T","C5242T","T5252C","C5280T","T5293G","C5303T","G5308A","G5330A","C5342T","C5384T","G5403T","A5447G","G5448C","A5471G","T5472G","A5494C","A5495G","A5496C","C5513T","T5515C","A5537G","G5566A","T5600C","T5611A","C5625T","T5626G","G5668A","A5699G","A5703G","A5720G","A5734C","G5741A","C5795A","T5827C","A5828G","C5833T","A5840C","A5843G","G5861-","C5862-","A5863-","A5865G","A5867C","C5869A","T5901C","A5916T","T5944C","C5974T","T5980C","C6004T","T6025A","A6030T","A6031T","G6037A","C6052T","A6065C","A6066C","A6098G","C6116T","A6131C","T6154C","A6158G","A6164C","G6165A","C6166T","-6167G","-6171T","-6174C","-6177G","-6178T","-6179G","-6180A","C6184T","-6186T","-6195A","-6196T","-6198A","-6199T","-6201G","C6202T","-6203C","-6204C","-6205C","-6207A","-6208C","-6209A","-6210T","-6211C","-6213C","-6214A","-6215A","-6216A","-6217T","-6218G","-6219A","A6222T","A6277G","T6287C","G6311A","-6317G","T6322C","A6324G","A6330G","-6346T","A6456C","T6457A","T6460G","G6463A","G6464A","A6465G","A6489G","A6544G","G6547A","C6563T","T6586C","C6613A","C6619A","A6620T","A6628G","A6636T","G6638A","A6649T","A6654C","A6686G","-6689A","A6706T","A6718C","A6728G","G6732A","A6748C","A6754C","C6758T","A6764G","A6765T","T6766G","G6771A","G6774A","A6800C","C6807T","T6808G","G6809C","A6811C","C6826T","T6828G","T6829G","A6841G","A6854G","A6857C","A6858C","A6868G","T6875A","T6916C","-6956C","-6963A","C6964T","-6967A","-6969C","-6970A","-6972G","-6973C","-6974C","-6975T","-6976G","A6977G","A6978T","A6990G","A6996G","A7001-","A7002-","T7003-","G7004-","A7005-","C7006-","C7008A","T7009C","C7084T","A7132G","C7134T","G7147T","G7160A","A7161T","A7238C","C7264T","A7313T","G7315T","T7386C","C7407T","A7505C","A7553C","A7589G","C7597T","T7618C","G7627A","T7630G","G7631C","T7642A","T7656A","C7678T","G7688A","A7689G","A7700G","G7701A","A7714C","G7769A","A7816T","T7877G","A7882C","A7883T","A7903T","G7918A","C7932T","T7948A","G7961A","G7995A","A7998T","A8011C","A8023G","C8077T","A8093G","T8159G","A8188G","C8294A","C8311A","A8323C","A8338G","T8348A","A8364C","A8372G","G8373C","T8374C","C8413A","A8425T","G8436C","C8460T","A8484-","C8485-","A8486-","A8493-","C8494-","T8495-","A8496C","T8498G","C8507T","T8511C","G8512A","A8519C","C8521A","A8531G","G8537T","C8552T","G8561A","C8568T","A8604G","T8646C","C8652A","G8664C","C8666G","A8797G","A8834G","T8864A","G8894A","C8904A","A8918G","A8922G","A8930T","T8939C","G8977A","A8978C","C8979A","T9014G","A9042G","T9095G","G9134T","A9151G","C9178A"],"INT":["I135V","K215R"],"RT-p51":["T11M","K39R","D121Y","D123G","S173A","M184V","G196E","E204K","P272A","D312N","G333E","Q334H","D335G","A355G","K357R","K366R","V376G","S379G","Y405H","E413D","V435M"],"RT-p66":["T11M","K39R","D121Y","D123G","S173A","M184V","G196E","E204K","P272A","D312N","G333E","Q334H","D335G","A355G","K357R","K366R","V376G","S379G","Y405H","E413D","V435M","L452M","T470A","T477A","S491L","L517I"],"gp120":["A3G","E4Q","N5-","V16A","E21V","N57K","E59V","N71P","S82G","K93Q","N102D","T104H","-10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I135V, K215R; RT-p51: T11M, K39R, D121Y, D123G, S173A, M184V, G196E, E204K, P272A, D312N, G333E, Q334H, D335G, A355G, K357R, K366R, V376G, S379G, Y405H, E413D, V435M; RT-p66: T11M, K39R, D121Y, D123G, S173A, M184V, G196E, E204K, P272A, D312N, G333E, Q334H, D335G, A355G, K357R, K366R, V376G, S379G, Y405H, E413D, V435M, L452M, T470A, T477A, S491L, L517I; gp120: A3G, E4Q, N5-, V16A, E21V, N57K, E59V, N71P, S82G, K93Q, N102D, T104H, -105D, -106N, -107I, -109N, -110G, -111N, -112T, -113T, -114N, -115S, -116P, -117N, -118I, -119T, -120N, -121E, -122M, -123G, Y145H, V153I, Q155E, N157G, N159S, N160S, N201T, D202E, E204R, K212R, I256L, N261V, E262K, K265N, N267T, V279I, H280G, T292A, D294A, Q300H, H302Y, N304V, S306N, R307K, N312K, K316Q, A318V, K319H, Q320K, F325W, -328N, N334A, N335P, L341I, -368H, -370S, -372G, -373N, D384-, T385-, T427I, N432I, A436S, N437M, K462Q; gp41: L4F, V28A, S35F, I84L, N96A, E110Q, D113E, L118Q, D129S, S133D, E137D, A156T, S192A, I194L, T210I, G220R, R231K, D232I, I264V, W286G, I329L, H331N, L340F; nef: S8R, I10M, V11P, P24Q, E28V, A32P, H40Y, S45I, T48Q, A50S, T51-, N52-, W57Q, E59D, A60E, E65D, V85F, S88G, W102H, Q104K, D108Q, E152G, D174E, E176D, R188S, L191F, R194V; p1: S9N; p17: L31M, A54T, E62D, P66S, T84V, N109E, G123R, S126G; p24: I11T, S14A, V26A, I27V, S41T, L83V, H87Q, M96L, D128E, T171I, E180A, T210S, G225S; p6: S23P, K31-, D32-, R33K, Q35P; pro: N37D, L63Q; rev: S8A, S34T, R38Q, R50N, I55L, I59V, P77S, H82R, V104G, T114A; tat: P3L, E9D, K24S, Y32W, K40R, S46F, Y47H, Q54R, D64N, P75S, V80D; vif: T20I, N22H, G37D, L59I, R63K, R67T, S95N, I98V, D113N, Q136P, A137T, T155A, P156S, T157R, T159I, H183L, R184Q, M189R; vpr: Q11P, N16Q, Y50H, A59V, I63M; vpu: C7G, V21I, K31R, K38R, I43L, R45K, T63K, D79R, N80D, 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T2L"}},"children":[{"name":"A1_NODE_0000011","node_attrs":{"div":0.09874,"clade_membership":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["A380G","G518A","C636T","T782A","G803A","A820G","C823G","C1094T","G1256A","G1271T","A1292C","G1424A","G1568A","G1589A","C1903T","C2071T","A2127C","A2154G","G2156A","C2296T","G2311A","C2326T","A2350G","A2386T","C2499T","T2612G","G2683A","A2699G","C2728T","A2839C","G2947A","G3166A","G3217A","A3292G","G3442A","G3463A","T3754C","G3770A","G3772A","A4555G","A4558C","G4766A","G5361A","A5480C","G5635A","G5706A","T5731A","A5748T","-5824A","T5944A","C5998T","G6044A","-6175T","A6192C","T6193C","C6263T","G6303A","T6307G","A6338C","T6340G","G6464A","A6575G","-6835G","T6883A","-6994G","T7003C","C7020A","G7688C","T7921C","G7943A","A8011C","T8159G","T8172C","C8242G","A8424G","A8573G","A8915T"],"RT-p51":["K11T","K20R","V21I","T39K","T135I","S173A","I202V","E248D"],"RT-p66":["K11T","K20R","V21I","T39K","T135I","S173A","I202V","E248D","E514D","V559I"],"gp120":["N159S","D294I","T371-","-381E","-382S","V402T","R472K"],"gp41":["W286G"],"nef":["E151D","R194I"],"p24":["K30R","A31G"],"pro":["L63A"],"rev":["V104G"],"vpr":["G86S"],"vpu":["L42I","R47S","T63K"]},"labels":{"aa":"RT-p51: K11T, K20R, V21I, T39K, T135I, S173A, I202V, E248D; RT-p66: K11T, K20R, V21I, T39K, T135I, S173A, I202V, E248D, E514D, V559I; gp120: N159S, D294I, T371-, -381E, -382S, V402T, R472K; gp41: W286G; nef: E151D, R194I; p24: K30R, A31G; pro: L63A; rev: V104G; vpr: G86S; vpu: L42I, R47S, 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D312E; RT-p66: D312E; gp120: N102D, -105Y, -106N, -107V, -114S, K224R, I265N, N267T, Q300K, R307K, H324Y, T371N, -375Q, -376E, -377S, T436N, N437T, T439I, R472K; gp41: S102T, I130L, K144I, D148E, N195K, T210I, R214G, R221G, W286G, N302S, H331N; nef: E28S; p17: M61I, D93E; p2: T8Q, -11N; p6: I14L, L50S; pro: K20R, K45R; rev: E11D, K32R, K39R, T68E; tat: Q35P, K71E, P75S; vif: N22H, H73Q, K151R, R158K, P183H; vpr: V89G, D91N; vpu: L2S, L33V, D58E"}},"children":[{"name":"KY496622","node_attrs":{"div":0.16487,"accession":"KY496622","clade_membership":{"value":"A1"},"country":{"value":"ES"},"date":{"value":2015.0},"Strain_name":{"value":"100_117"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["G90T","C155G","C160T","C201T","T214A","-215A","-216C","-217A","-304T","T362C","A398G","G407A","A419G","G428A","C496A","G518A","G524A","A527G","C537A","C539T","A540C","T572C","A585G","C586T","A592T","T596G","C636G","A645T","A653G","T655C","T662G","G665A","A676G","G677A","G703A","A711G","C713T","G755A","A758G","A762G","C767T","T892C","G893A","G956A","A1034G","T1058C","A1076G","G1090C","C1103T","G1109A","C1137T","C1214T","A1289G","C1304T","G1311T","A1319T","T1329A","C1330G","A1349C","T1350A","G1418A","T1451G","A1452T","A1467G","A1497G","G1499A","A1546G","C1556T","G1586A","C1610T","A1656C","G1657A","G1664A","T1676C","G1687A","C1693T","A1694G","A1703T","G1718A","A1735G","A1742G","C1756T","G1777A","A1790G","A1832G","G1835A","A1839G","G1845A","A1846G","G1963A","C1985G","A2002G","G2008A","G2027A","T2035C","A2059G","A2075C","T2080A","T2149G","A2215C","A2241G","T2251C","C2353T","G2380A","C2499T","C2533T","T2542G","A2563C","C2589T","C2613T","T2679C","G2710A","C2828G","A2829T","A2839T","A2842G","T2890C","C2910G","G2914A","A2925G","A2977T","A3019G","T3045C","A3142G","A3192G","G3250A","A3251G","A3283G","A3286G","A3292G","G3304A","C3376T","G3379A","G3383A","G3385A","G3442A","C3449T","G3463A","T3497C","A3630G","A3658C","A3697G","T3742C","T3746C","T3754C","G3765A","G3766A","G3769A","G3770A","G3787A","A3808G","T3811C","C3892T","A3919G","A3979G","G4063A","C4129T","A4130C","A4159C","A4176G","A4178G","G4243A","C4258T","A4293G","T4321C","T4405C","A4661G","G4673A","G4677A","T4702G","G4708A","C4715T","G4723A","C4728A","G4765A","T4769G","G4774A","G4779A","G4856A","A4863G","G4864A","A4865T","C4890T","A4956C","C4976A","T4979A","A4980G","G4981A","T4982G","A5000G","C5050T","A5054C","A5056G","G5060A","T5072C","A5094G","C5102T","G5128A","G5140A","G5179A","T5203C","C5221A","T5224G","T5228C","T5237C","T5260C","T5292C","G5312A","A5335G","G5386A","C5412T","G5418A","A5426G","A5431G","T5436A","G5444A","C5445T","G5448T","T5451C","A5462G","G5463A","T5467A","C5469T","T5478C","C5548T","G5561A","T5602C","G5620C","T5628G","C5653G","T5654C","T5670A","T5688C","G5692C","A5694G","A5696G","A5702G","G5741A","T5778C","A5793G","G5800T","-5812A","-5817C","A5824G","T5829C","G5839A","A5849T","C5851G","A5866G","C5887T","T5956C","C5974T","A6023C","A6024C","T6025A","G6044A","C6101T","G6121A","A6130G","T6154C","-6167C","G6170C","-6175G","A6176G","T6178C","-6180C","T6184C","A6186G","-6195C","-6196T","-6198G","T6199C","-6201C","-6203C","-6204C","-6205T","-6206A","-6207A","-6208T","A6212-","G6225A","A6230G","C6247T","T6250C","A6275C","C6278A","A6286G","T6287C","A6292G","G6303A","C6317T","A6318C","G6333A","A6338C","T6340G","T6395A","G6442A","T6445C","A6456G","T6457A","C6487T","A6489G","G6490A","T6534C","C6559T","G6577A","C6603G","A6604T","A6605G","C6637G","T6643C","A6668G","A6684C","-6689A","A6715G","C6758T","T6763C","A6776G","A6780C","A6800G","A6801G","T6807C","G6809C","A6811G","C6822A","-6831A","-6836A","-6837A","-6838T","A6839-","A6840-","A6841-","C6850T","A6884G","C6885T","-6956G","-6957A","-6958G","A6960C","T6961C","G6962A","-6963A","C6964T","-6969C","-6994A","G6995-","A7000-","A7001-","A7002-","T7003-","C7008A","T7015C","A7046C","A7057G","G7058A","C7084T","C7088A","A7100C","G7101A","G7106A","C7114T","G7147T","A7152G","C7156T","A7168G","G7198A","G7199A","A7200T","C7201T","A7237T","T7243A","A7246G","C7264T","A7265T","G7285A","G7286A","A7290G","A7306G","G7310A","G7311C","A7373C","A7375G","A7439C","G7440A","G7517C","C7561A","C7574A","A7583C","A7589G","A7590C","G7594T","C7605A","C7625T","G7627T","G7633T","G7640C","C7642A","A7673G","T7681C","G7690C","A7691C","T7692A","G7712A","A7714G","A7744G","A7772G","T7774C","A7782G","C7795T","C7801T","T7825C","G7835A","T7853C","T7888G","A7929T","A7938G","T7948A","G7961A","A7992G","A7996C","G7997A","G8017C","A8018G","G8019A","A8023G","C8056T","C8065T","C8092T","A8093G","T8097C","G8105A","G8181T","A8188G","A8204G","T8209C","C8213T","A8222T","C8232T","G8234A","A8240G","A8255G","T8277C","T8279G","T8290C","T8292G","C8323A","T8332G","T8366A","T8371G","A8372G","T8374A","G8375A","G8377A","C8382T","A8402G","A8403C","G8404A","A8405G","C8415G","A8425G","A8426T","T8483C","C8507T","C8509T","C8510A","G8522A","A8531C","C8543A","G8555A","A8558T","A8564G","A8584T","G8588A","T8594G","G8597T","C8607T","A8608T","A8647G","C8648G","G8657A","A8666C","T8672A","C8676T","A8684T","G8744A","T8779A","T8789G","T8795A","G8816A","A8829T","A8834G","G8875A","A8879G","T8887G","C8904A","G8905A","C8906G","A8918G","C8921T","A8922C","C8934A","T8935A","G8936A","A8980T"],"INT":["S119P","N134S","I135V","K173R"],"RT-p51":["E40D","K49R","S123N","T135I","T165I","S173L","I195T","Q245V","E248D","A272G","K277R","V317A","K366R","T386A","M403I","E430K"],"RT-p66":["E40D","K49R","S123N","T135I","T165I","S173L","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S119P, N134S, I135V, K173R; RT-p51: E40D, K49R, S123N, T135I, T165I, S173L, I195T, Q245V, E248D, A272G, K277R, V317A, K366R, T386A, M403I, E430K; RT-p66: E40D, K49R, S123N, T135I, T165I, S173L, I195T, Q245V, E248D, A272G, K277R, V317A, K366R, T386A, M403I, E430K, S468P, K512R, R557K, V559I; gp120: N57P, E64N, Y105H, N108T, -109L, N110K, -111G, -115T, -116N, -117T, -118S, -120P, -121N, -122M, -123K, -124E, I126V, K127R, Q142K, Y145H, R150K, Q155S, S162Q, S181T, N201R, K212R, V227A, V242I, T250S, N251D, T261K, N272G, K277T, V279I, H280R, H302Y, T308A, E309A, K316G, V318A, N319Q, E323K, -328N, N335S, T344V, G361S, -368E, N369T, -372A, -374I, -379S, T385N, M398L, A402T, Q412K, R416Q, V418I, N433S, N434T, D449I, T471S, V478M, E479G; gp41: G3T, I24L, R46Q, V72L, L91I, T94P, N96A, S101Y, Q108Y, E110D, D113Q, I124V, Q129D, L130Q, E137K, N157D, N160S, V178I, H209L, N212S, G220R, D230G, R231S, G232S, S239D, I264V, L265S, A268T, G293I, I301V, L304F, I307L, A310V, V311I, N313G, I318V, I325T, C326G, L330R; nef: S8R, I10R, V11E, G12A, P14S, I20M, R21Q, A56V, E63D, Y81F, L85F, H89F, Y102W, E108D, V146E, D149E, S163C, E176D, R178K, I182R, R188K, F191L, R194L, L198K; p1: S9H; p17: A54K, L68I, K69Q, T84V, Y86F, C87W, L101V, I104L, I107T, N109K, K114R, G123E, S126G; p2: N9Q, -10S; p24: I11V, M54T, S120A, A194S, S207T; p6: S3N, P5L, E19G, I21M, P25L, R33K, V36A; p7: M1V, R11G, N27S; pro: T12A, V13I, K14R, G16E, L63A, V77I, I93L; rev: V16I, S34T, R38Q, R50Q, E57R, I59V, P70S, L73F, H82C, V104G, G111D, T114A; tat: V4I, Q17R, T19A, K24N, K29R, C31S, T58S, S62N, I74L, T77A, V80D; vif: M29I, V31I, G37D, F39C, R41K, S46N, H48N, G60E, D61E, R63K, V65I, R93D, I124L, S130R, R132E, T155V, K157R, T170A, R181K, G185E; vpr: H40Q, Y45H, I63T, V70I, Q77R, G94D; vpu: E5Q, C7W, L16A, E29Q, Y30C, K32R, R45K, A62L, T63Q, E66D, -79Y, N80D, N81L, L82G"}}},{"name":"JF683782","node_attrs":{"div":0.15607,"accession":"JF683782","clade_membership":{"value":"A1"},"country":{"value":"CY"},"date":{"value":2008.0},"Strain_name":{"value":"CY235"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["T377C","G378T","T396C","C426A","T479C","A495G","A497G","G518T","A520G","C531T","G542T","T571A","A654C","C657A","A692C","A714C","C723A","A724G","G770A","G785A","A806G","C851T","A891G","G899A","C917T","T944C","A968G","A980G","G987C","T988C","G1019A","A1050G","A1070G","A1073C","G1089A","G1173C","T1174A","T1175G","C1211T","A1241G","G1278A","G1279A","A1292C","A1295C","T1334C","T1358C","A1359T","G1405C","C1406T","T1439C","T1444C","A1452G","-1455A","-1456A","-1457C","A1459T","C1460A","A1463G","T1484C","G1498A","C1598T","A1701T","G1778C","G1779-","A1780-","A1781-","C1782-","A1783-","G1784-","G1785C","C1787T","A1790C","A1838G","A1907G","A1920G","A1951G","T1987C","T2087C","A2154G","G2155A","T2251A","T2257C","A2293G","A2455G","G2456C","A2462G","G2566A","C2584T","T2612G","A2626C","A2630G","C2653T","G2727A","C2728A","G2770A","C2857T","G2878A","A2884G","A2929G","A2938G","A2969G","A3001G","C3023T","A3027G","A3080C","T3112C","A3145G","G3166T","G3208A","T3222C","A3224T","A3264G","A3265G","A3293C","C3294T","T3328C","T3358C","T3399C","A3532G","C3541T","A3619T","T3634C","C3649T","G3664A","A3768G","A3808T","G3816A","A3817G","G3836A","A3866G","G3896A","G3952A","G3955A","A3964G","A3988G","G3989A","C4072T","G4092C","C4144T","T4151G","T4153C","A4175G","G4195A","T4240C","C4428T","A4495G","G4573A","T4606C","A4687G","G4695A","T4701A","T4702A","T4703A","G4774C","G4786A","T4799G","A4816G","A4826C","C4890A","A4895G","C4914T","C4939G","A4988T","A4993C","T5003C","C5006T","G5086A","A5167G","C5168T","T5188A","T5197C","A5215G","A5240G","T5245C","A5247C","G5276C","T5294C","C5333T","A5345G","T5356C","A5453T","C5457T","T5483A","C5496A","G5534A","A5563G","A5581G","G5619A","T5626A","C5651T","C5653T","C5659A","C5678T","A5689T","T5695A","A5696T","A5781G","A5793T","T5799C","T5801C","A5804T","A5805G","-5812G","-5817G","T5834C","C5862T","C5869A","T5870A","T5871C","G5917A","G5954A","A5955C","T5956A","G5963A","C5998T","A6001G","A6016G","T6046A","A6062C","A6063T","G6079A","T6151C","A6164G","C6166A","-6167T","G6170A","T6171A","C6172T","A6173G","A6174T","-6175C","-6180T","A6191T","-6195G","-6196C","-6198T","T6199A","A6200-","C6202-","-6208A","-6213T","-6214A","-6215C","-6216C","-6217A","-6218T","-6219G","-6220G","G6224-","G6225C","A6229T","A6230T","A6248G","A6251G","G6253A","A6259G","G6260A","C6263T","A6283T","G6311A","A6319C","G6336A","G6403A","C6412T","A6471G","C6477A","C6496T","A6502G","A6508T","G6572A","A6574T","A6576G","T6579C","A6636C","C6637T","C6660T","-6689G","G6693A","A6723T","A6734G","T6735A","A6736T","T6745C","A6757C","A6764G","T6766G","G6771A","A6773G","A6791G","G6796A","C6797A","A6798C","C6808T","G6830A","-6831G","T6849C","T6856A","A6857G","T6860C","C6928T","G6936A","C6937A","C6938T","G6948C","C6949A","-6963C","-6969G","A6974G","A6986G","A6987T","T6988C","G6990A","-6994T","-6996C","-6997A","-6998G","-6999G","A7000C","T7003C","G7004A","A7005C","C7006T","A7013T","C7014T","A7044G","T7045G","A7090G","G7094A","T7095G","T7107A","A7127C","A7129G","G7147A","A7148G","A7149G","A7154G","C7156A","T7159C","T7165A","C7174T","T7228C","A7231G","A7275G","G7289C","A7313C","A7447T","T7462G","C7463A","A7470G","A7532G","A7533G","A7626T","A7628G","G7631A","G7640A","C7655A","T7666C","G7688C","G7690A","A7691T","A7701C","G7712C","C7755A","A7799C","C7805T","A7886C","A7887G","A7891G","G7918A","A7931T","A7936G","A7974G","A8011C","C8044A","C8047T","G8055A","C8104T","T8113A","C8156A","G8158T","T8164C","C8165A","A8191G","G8241A","G8254A","A8273G","C8291A","C8323T","A8370T","G8385A","G8388A","T8390C","C8412-","C8413-","T8414-","A8417T","C8419T","G8421A","A8424G","A8426G","G8427A","A8429T","G8430A","T8431G","G8434T","C8437G","T8440C","C8443A","G8448A","T8451C","C8460G","G8464A","G8469A","T8470G"],"INT":["E11D","R14K","A21T","I31V","D41N","M60I","V72I","G106A","S119T","F126V","N134D","T218I"],"RT-p51":["K20R","D121H","S123D","S173A","E177D","I179V","S211K","I292V","K311R","I329L","K357N","V376A","M377L","K390R","T400L","V435A"],"RT-p66":["K20R","D121H","S123D","S173A","E177D","I179V","S211K","I292V","K311R","I329L","K357N","V376A","M377L","K390R","T400L","V435A","K558R"],"gp120":["A3V","N5K","L6T","D34T","V37M","N70L","S104G","N108S","-109I","-111N","N113Y","-115I","E125-","I126-","K127-","N132D","M133V","E136K","K143N","V153I","Q155H","S158-","N159-","N160-","S161-","N206S","T208K","Q218H","E240N","K241R","V242T","T269I","N272S","Y290F","N304E","S306N","K307E","T313A","Q315T","N319E","E323T","E326R","-329K","I332T","N334K","N335G","S336P","G361K","S365T","N370A","-372G","-374V","N378V","-379N","-381A","-382G","-383N","D384T","T387F","N397R","V414R","V418E","I425L","N432G","N434A","K474R","E479Q"],"gp41":["I4L","H53Q","L54M","K56R","K77G","Q108L","N109D","E110K","D113N","L118M","N133T","E137Q","A151E","N166H","K195R","I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E11D, R14K, A21T, I31V, D41N, M60I, V72I, G106A, S119T, F126V, N134D, T218I; RT-p51: K20R, D121H, S123D, S173A, E177D, I179V, S211K, I292V, K311R, I329L, K357N, V376A, M377L, K390R, T400L, V435A; RT-p66: K20R, D121H, S123D, S173A, E177D, I179V, S211K, I292V, K311R, I329L, K357N, V376A, M377L, K390R, T400L, V435A, K558R; gp120: A3V, N5K, L6T, D34T, V37M, N70L, S104G, N108S, -109I, -111N, N113Y, -115I, E125-, I126-, K127-, N132D, M133V, E136K, K143N, V153I, Q155H, S158-, N159-, N160-, S161-, N206S, T208K, Q218H, E240N, K241R, V242T, T269I, N272S, Y290F, N304E, S306N, K307E, T313A, Q315T, N319E, E323T, E326R, -329K, I332T, N334K, N335G, S336P, G361K, S365T, N370A, -372G, -374V, N378V, -379N, -381A, -382G, -383N, D384T, T387F, N397R, V414R, V418E, I425L, N432G, N434A, K474R, E479Q; gp41: I4L, H53Q, L54M, K56R, K77G, Q108L, N109D, E110K, D113N, L118M, N133T, E137Q, A151E, N166H, K195R, I210F, E224G, D247E, S251N, L285I, L288I, G293S, R324G, L330I; nef: I10L, E15K, V16I, A25V, A26T, A27E, G29R, V33Y, S34Q, Q35N, D36-, H40D, G41E, V43S; p17: A15S, L31M, E62G, P66S, K69N, F79Y, I107L, Q108K, K127Q, Q130R; p2: V7A, N9H, -10A, -12I, I13M; p24: M54V, V86P, M96I, T107A, Q114H, V148Q, G183N, E187D, T210S, G225A; p6: T8S, R33S, E34P, Q35-, V36-; p7: R11K; pro: K14E, N37D, K41R, L63P; rev: D7N, Y28F, K30E, I55L, P67S, H86C, C89S, S103Y, V104W, S106H, G111E, K115E; tat: N23S, Y26F, V36D, N40K, R53K, T58P, K63E, I69V, Q76R; vif: V7A, K34R, G37N, F39K, R63T, R67K, K77R, Q80H, L102M, H110Y, S118C, R132S, E134D, Q136P, T155A, R167K; vpr: H28Q, I46V, N48T, E58Q, I84T; vpu: C7S, A15V, L18I, T24I, I28L, Y30I, E60D, L61T, A62D, T63E, I65A, E66L, M67L, G68-, -69V, -70E, -71M, -72G, -73N, -74Y, -75D, -76P, -77G, D78V, 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Q174K, D250E; gp120: D34E, I126-, V153I, E240G, M243K, T308S, V418E, N433S; nef: Q22R, T23A, E63D, E151D; p17: K76R; p24: I11V, T207A; p6: T22A, P36-; rev: S107P; vif: A137T; vpr: E25D; vpu: V13I, 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G68-"}}},{"name":"MT942889","node_attrs":{"div":0.14769,"accession":"MT942889","clade_membership":{"value":"A1"},"country":{"value":"RW"},"date":{"value":2008.0},"Strain_name":{"value":"R3103M_175079_1"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["G161C","T214A","-215G","-217T","A301C","A302T","T303-","G386A","A389G","T396C","C426A","C471A","G495A","T506C","G518A","C537G","A540C","A554G","A557G","C558G","A576G","C583T","A585G","C586T","T614G","T635C","A638G","T662G","G665A","C679A","A711G","A714C","A743G","T774G","A806G","C823G","G837A","T892C","C917T","G920A","A968C","G1089A","G1139A","A1160G","A1192G","G1199A","A1267C","G1268A","G1279C","C1385T","C1406A","A1452C","-1455A","-1456A","-1457T","A1458-","A1459-","C1460-","G1474A","A1495G","G1508A","C1535T","G1543A","T1559C","A1642G","T1646C","G1661A","A1673G","A1694G","A1772G","G1777A","A1781T","-1785T","-1786C","C1787A","C1825T","C1826A","C1853T","A1894G","C1957T","A2002G","A2007G","C2095T","A2126G","A2127C","G2134A","A2185G","C2211T","A2212G","A2221G","A2227C","T2236C","A2273G","A2275G","C2326T","C2392T","T2393C","C2434T","T2443C","A2462G","C2503T","T2542G","A2617G","A2665C","A2734G","G2761A","T2776C","A2794G","G2809A","C2818A","A2828G","A2829T","C2831T","A2842G","A2884G","T2917C","G3010A","C3023T","A3058C","G3094A","G3162A","G3173A","A3192G","A3205C","G3211A","A3258G","A3292C","T3380G","G3398A","T3493C","G3494A","G3508A","T3517C","T3530C","C3542T","T3551C","T3634C","T3644G","A3651G","G3664A","A3665G","G3674A","T3746C","T3755C","C3756A","T3757G","G3772A","G3787A","T3799C","T3820C","G3825A","C3826T","T3844C","G3859A","T3865A","A3910G","C3977T","G3997A","T4024C","T4039C","G4060A","A4176G","T4177G","G4195A","A4213G","C4258T","A4285G","C4288T","T4412C","G4549A","G4573A","T4697G","T4738C","A4760T","G4779A","T4799A","C4826T","T4868C","A4877G","T4910C","C4914T","C4937A","C4965G","A4995G","A5004C","A5005C","T5018C","A5021C","G5036A","C5050A","C5056G","C5062A","A5089T","A5094G","A5096T","T5102C","G5128A","G5143A","T5162C","T5188A","G5212A","C5221T","C5237T","T5252C","A5269G","G5296A","A5302G","C5303T","A5400G","A5433C","G5444A","C5445T","T5466C","C5491A","C5496T","G5534A","G5545C","C5584T","A5607G","C5614T","G5620A","A5621C","A5622T","C5625T","C5659T","G5700A","C5707A","T5708G","G5717A","A5718G","A5734C","A5751G","T5781C","-5809G","-5810G","-5811G","-5824A","A5843C","G5858A","C5859T","T5860G","A5866C","C5869T","C5884A","T5911C","G5917T","T5924C","T5929C","C5958A","T5964A","G5965A","T6021G","A6022G","G6028A","A6030T","G6037A","G6046T","A6061C","A6066G","C6097T","C6116T","T6154C","-6165T","-6180T","A6186T","C6187T","C6189T","A6192C","-6196C","-6199C","-6201C","-6204C","-6205C","-6208T","-6210T","-6211C","-6214T","-6215A","-6216A","-6217T","-6220G","A6229C","A6234G","C6263A","T6271C","A6275C","A6286G","C6317G","T6322-","G6323-","A6324-","A6329G","T6337C","A6338C","G6339A","T6418C","C6445T","G6451A","G6457A","A6462G","G6463A","G6481A","A6576G","A6583G","G6593A","C6601A","C6618T","G6626A","C6632T","G6638A","G6640C","C6641A","A6646G","A6649C","T6652C","A6654C","A6659G","C6660T","A6695G","-6700C","-6701A","T6733A","A6773T","G6774T","A6775C","T6776A","C6777A","A6778C","G6779C","A6788G","A6790T","T6808C","A6810G","A6811T","C6812G","G6819A","A6821G","A6825G","C6826T","T6829C","-6830A","-6831G","-6832G","-6833A","-6834A","-6835C","A6836-","A6837-","C6838-","G6871A","G6894C","T6946C","-6956T","-6957A","-6958T","A6959C","-6963G","-6968T","A6971-","-6979A","-6980G","-6983T","-6984G","A6986C","A6987G","T6988A","A6989C","C6991G","A6992C","C6993T","-6994T","G6997A","C7020A","T7045C","G7058A","T7059C","A7066G","G7101A","T7117A","A7135C","A7149T","T7150A","T7153C","A7155G","A7160G","G7198A","G7225A","A7279G","G7289A","A7290C","A7373C","C7411T","C7429T","G7459A","G7517C","A7533G","T7609C","T7622A","G7627A","T7630A","T7642A","C7645T","C7678T","A7680G","A7711G","G7769T","G7790A","T7796A","A7826G","A7832G","A7880G","A7903G","G7918A","A7931G","A7943G","G7944T","T7948A","C7959T","A7986G","G7992A","G7997A","A7998C","G8017C","C8080A","A8119G","T8121G","A8142G","C8146G","T8159G","T8164C","T8171A","G8184A","T8196G","T8203C","G8212A","C8213G","G8254T","G8255A","A8258C","A8264T","C8323A","G8385C","T8390C","A8402G","A8408T","T8411A","C8412T","A8425C","T8462C","A8469G","G8503A","G8506A","C8507T","G8516A","G8522A","A8531T","G8534T","C8568T","T8595G","T8740C","A8746T","C8751T","A8762G","A8824C","A8859G","A8879G","G8905A","A8912C","A8915C","A8922C","T8923A","C8927A","C8928A","C8948T","A8980T","-9014G","T9073C","T9097G","-9108C"],"INT":["S17N","N134G"],"RT-p51":["K11A","T39M","E44D","I60V","S123G","Q245V","E250D","R356K","A360T","K366R","E370D","K388R","E399D","L429V","V435I"],"RT-p66":["K11A","T39M","E44D","S123G","Q245V","E250D","R356K","A360T","K366R","E370D","K388R","E399D","L429V","V435I","V467I","H483Y","L517V","N519S","K524E","S554Q"],"gp120":["A2M","E4D","E21D","T35K","V37K","I56R","E59V","E64N","K69N","N71S","-105D","-106M","-107R","T110-","E125-","K127-","N128-","L137I"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S17N, N134G; RT-p51: K11A, T39M, E44D, I60V, S123G, Q245V, E250D, R356K, A360T, K366R, E370D, K388R, E399D, L429V, V435I; RT-p66: K11A, T39M, E44D, S123G, Q245V, E250D, R356K, A360T, K366R, E370D, K388R, E399D, L429V, V435I, V467I, H483Y, L517V, N519S, K524E, S554Q; gp120: A2M, E4D, E21D, T35K, V37K, I56R, E59V, E64N, K69N, N71S, -105D, -106M, -107R, T110-, E125-, K127-, N128-, L137I, K141Q, Q155E, N157-, N159D, S162H, K203R, K241R, E247K, T255I, V258I, L260F, E262N, P263T, K265N, N267T, T269V, D294E, R307F, S308N, E309Q, K312D, K319S, Q320E, R322K, H324R, -326R, S347T, -368Y, N369H, -370S, T371N, P389Q, V402T, Q412P, R416K, N432I, N434S, T436E, N437S, E479T; gp41: I24L, V72L, K77R, S107T, N109E, D113E, N126S, A156S, D163N, S165T, I175V, I177V, I193V, T210A, R214V, P219L, E228G, G230D, D232T, L273R, K280R, W286G, L290I, R294Q, I298S, L304V, R317S, V318I, I319L, I321L, C326G; nef: E15Q, I20M, P24S, E28T, I43V, S52N, -53Y, -54V, C55-, A56-, E64D, L85V, I133T, Y135F, N161T, M173V, R188H, L191F, R194Q; p1: K4R; p17: L31M, L46I, A54T, M61I, L68V, K69Q, L75V, T81A, A83V, T84V, N109K, T115K, S126G, K127Q; p2: T8Q, N9Q, -10P, -11N; p24: L15V, A31G, V36I, M54T, E79D, G120S, K154R, Q179P, N183T; p6: R33K, E34D, -36A, P49L; p7: R3K, K10R, R26K; pro: L10I, K70R; rev: D7N, E10D, Y28C, K32S, S34T, R50N, E57Q, L78I, T91A, P100A, V104G, S106P, V108D, N116K; tat: L39I, R53K, P70S, I74M, G79W, V80D, P84S; vif: V51T, V65I, H110Y, D117E, Q127E, T137A, N140P, T155K, T157R, T159K, K168I, T170A, R181K, S186N; vpr: H28Q, H45Y, Y50H; vpu: E5N, L34R, R37K, I43L, T63K, -69N, -70Y, -71D, -72L, -73G, -74N, -75A, -76N, -77N, D81-"}}}]},{"name":"A1_NODE_0000020","node_attrs":{"div":0.09127999999999999,"clade_membership":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["A706G","A1350G","C2845A","T3577C","G3718A","G3796A","A3907G","T3943C","G4078A","A5795C","G5802T","G6333A","A6636C","A6800C","G6955-","A6959-","G8561A","T8913C","T8923G","G8929A"],"RT-p66":["V60I"],"gp120":["K316Q","N334T","N437T"],"gp41":["N109D","C326G"],"nef":["E28T"],"vpr":["I63T"],"vpu":["T2S"]},"labels":{"aa":"RT-p66: V60I; gp120: K316Q, N334T, N437T; gp41: N109D, C326G; nef: E28T; vpr: I63T; vpu: 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R20K, N134G; RT-p51: V21I, I292V, R356K, T386A; RT-p66: V21I, I292V, R356K, T386A, H483Y; gp120: D105N, -113N, E204K, R243I, D446N; gp41: K77R, S125D, K172R, L244I, V271L, I298N, I321V, H331N; nef: S8R, V16I, I20M, M182R, K192R, R194L; p17: S49G, M61L, R76K; p24: S14A, L15V, S200T; p6: D32-; p7: R7K; rev: K30E, T62D, C89I; tat: Q76R; vif: R63K, K160R; vpr: T63I; vpu: V65I, 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R14K, Q216H; RT-p51: K43N, T135I, I142T, I178L, I179T, T200A, S211N, K245E, A272P, D291E, F346H, K357Q, M377T, K395R, V435A; RT-p66: K43N, T135I, I142T, I178L, I179T, T200A, S211N, K245E, A272P, D291E, F346H, K357Q, M377T, K395R, V435A, K465R, V467I, E514D; gp120: A3V, E4D, N5K, E34N, T35R, V37A, N52D, N57P, N102K, -106A, -107K, -109E, -111K, -112F, -114E, M126L, K141T, K150R, I153V, N159D, N160-, S161-, T174K, K199R, K203N, L210T, K212T, G240E, N261V, N267R, T269I, P271V, N272S, N274K, K277T, H280R, A288T, D294A, Q300E, N304T, S306N, R307G, N311K, K312G, V317I, A318V, E323K, -328T, K329T, I332S, T334N, N335S, I343V, G361K, -368P, -369Q, -370S, -379H, -382D, D384G, T385N, I386L, I395L, M398L, V402A, Q412P, V414N, R416S, E418V, S433T, N434G, T436N, T439I, L466I, V468I, R472K; gp41: V2A, G3L, I4A, V7F, A14T, T25A, H53Q, K56R, S101A, S107T, Y108Q, N114S, D129Q, I130T, K133E, I135L, E137A, D148E, N160S, D163N, S165T, S192A, I193L, N212S, R221E, Q229P, D232T, F263C, G286K, L290V, R294Q, 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N81-"}}},{"name":"A1_NODE_0000025","node_attrs":{"div":0.13627999999999998,"clade_membership":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["T95G","C96T","G119T","T227A","A359G","C426T","A540C","A611T","T641C","C657-","A658-","C731T","A752G","A759T","G761T","G791A","C827T","G899A","C1061T","A1067G","A1074G","G1090C","A1142G","A1193G","A1196G","G1350A","G1394A","G1404A","A1412G","T1444C","G1586A","G1664A","T1682C","A1736-","C1745-","-1746G","-1748T","T1749C","A1774G","-1785A","-1786A","C1903T","T1986C","C2326T","T2365C","A2386G","T2449C","G2463A","A2500T","G2509A","G2524A","T2527C","T2536C","A2579T","G2602T","A2699G","G2710A","C2715A","T2716G","C2728A","G2755A","T2873C","G2878A","G2914A","A2975C","G3094A","A3151G","A3165G","T3170G","T3207C","G3211A","G3221A","C3223G","T3253C","A3264G","G3398A","T3412C","G3448A","G3463A","A3481T","G3675C","A3685G","A3727G","C3889T","C3892T","A3979G","G4060A","A4084G","C4180T","C4181A","C4534T","A4546C","A4625G","A4650C","T4656A","T4697A","T4702C","G4723A","A4735G","G4786A","C4826A","T4868C","T4938A","G4968A","G4975T","A4980T","A4994G","T5003C","A5021G","A5048G","C5062G","G5075A","G5087A","A5093G","G5128A","A5136C","G5143A","T5203C","T5371G","T5391C","C5412T","T5439A","C5479T","C5496A","T5600C","T5604G","C5612T","G5620T","C5658A","T5670A","A5689C","G5700A","G5706A","A5709G","T5781G","-5812G","G5856A","T5986C","G6028A","G6044A","A6073G","C6097T","T6151C","T6155C","T6160C","-6169T","A6185G","T6193C","-6203G","-6205G","-6207C","-6208A","-6209A","-6210T","-6211G","-6213C","-6214A","A6215C","-6216T","A6221-","A6222-","G6253A","C6263A","A6318C","T6328A","G6345T","A6346C","A6379G","T6395A","C6396G","C6483T","G6578A","A6631G","C6636A","A6647C","A6685G","G6693A","G6743A","C6797A","A6809G","C6810A","C6812A","A6821G","C6826T","C6859A","T6860C","G6871A","T6932A","-6956T","-6958T","-6959A","-6962A","-6963A","-6969G","-6972C","-6976T","-6977G","A6996-","T7015A","A7046G","G7048A","G7072A","C7114T","A7120G","A7123G","G7152A","A7162T","C7164-","G7197A","T7217C","A7219G","G7307A","A7339G","A7348C","A7372C","A7373G","A7456G","C7463A","T7466C","A7525T","G7628A","A7691G","C7703T","G7735A","A7773G","T7774C","T7876C","A7942C","G7947A","T7950C","G7962A","A7989G","G7992A","G8019A","C8037T","T8113A","A8143G","G8159T","T8182C","C8183A","A8193C","A8194C","T8209C","C8232T","A8269G","A8288T","T8348G","A8370-","T8390C","C8406A","A8455C","A8456C","G8597T","C8607T","A8608T","G8738T","T8786A","G8822A","C8828T","C8831T","T8914G","C8927T","A8930T","A8969G","G8977A","A8978C","C8979A","A8980G","C9078A","T9095G","-9108A","A9134T","T9180G","C9181T"],"INT":["Q136K","R284G"],"RT-p51":["S123N","S162C","E169D","I202V","A207E","S211R","T294P","K357R","S359A","V371A","V376M","K390R","V435I"],"RT-p66":["S123N","S162C","E169D","I202V","A207E","S211R","T294P","K357R","S359A","V371A","V376M","K390R","V435I","G527A"],"gp120":["S1N","E34K","E64K","-109V","-111V","-115S","-117E","M133I","L137I","Q155P","N158K","R164I","N201K","V242I","D297N","Q315K","T319E","Q320K","N335K","S336P","S360T","-368Y","-369N","-371T","-375D","E381-","M398V","M406I","V414I","S433-","N435T","T436S","T437N","R448K"],"gp41":["V2I","I24V","L54M","R74S","D109N","I130V","N157S","G215D","L216P","G220E","Q229R","G230D","S239N","A245V","G286W","K297T","A310V","I329F"],"nef":["E38A","L85F","H89F","R188S","L191R"],"p17":["K69Q","Q108K"],"p2":["V7A"],"p24":["M10F","I115V","G120A","A207T","G225S"],"pro":["L63H"],"rev":["K32Q","R99G","S112Q","K115N","N116Q"],"tat":["N40K","Q78P","S81P","E85K"],"vif":["N22H","L24I","F39S","K50R","R67K","H80Q","S118T","V128I","R132C","T159S","R181K","S186N"],"vpr":["Q11P","V89G","S96P"],"vpu":["S2L","L4P","E5L","I28L","D58E","-69D","-77G","-79D"]},"labels":{"aa":"INT: Q136K, R284G; RT-p51: S123N, S162C, E169D, I202V, A207E, S211R, T294P, K357R, S359A, V371A, V376M, K390R, V435I; RT-p66: S123N, S162C, E169D, I202V, A207E, S211R, T294P, K357R, S359A, V371A, V376M, K390R, V435I, G527A; gp120: S1N, E34K, E64K, -109V, -111V, -115S, -117E, M133I, L137I, Q155P, N158K, R164I, N201K, V242I, D297N, Q315K, T319E, Q320K, N335K, S336P, S360T, -368Y, -369N, -371T, -375D, E381-, M398V, M406I, V414I, S433-, N435T, T436S, T437N, R448K; gp41: V2I, I24V, L54M, R74S, D109N, I130V, N157S, G215D, L216P, G220E, Q229R, G230D, S239N, A245V, G286W, K297T, A310V, I329F; nef: E38A, L85F, H89F, R188S, L191R; p17: K69Q, Q108K; p2: V7A; p24: M10F, I115V, G120A, A207T, G225S; pro: L63H; rev: K32Q, R99G, S112Q, K115N, N116Q; tat: N40K, Q78P, S81P, E85K; vif: N22H, L24I, F39S, K50R, R67K, H80Q, S118T, V128I, R132C, T159S, R181K, S186N; vpr: Q11P, V89G, S96P; vpu: S2L, L4P, E5L, I28L, D58E, -69D, -77G, -79D"}},"children":[{"name":"KX232594","node_attrs":{"div":0.17629999999999998,"accession":"KX232594","clade_membership":{"value":"A1"},"country":{"value":"PK"},"date":{"value":2014.0},"Strain_name":{"value":"PK001"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["G2A","C6T","T7A","T10G","G15C","C17T","A19C","G20T","C23G","-24T","A26C","C28A","C29A","G33A","A34T","C36A","G49T","G95A","A222G","A263G","A302T","A428G","C471G","T486G","A516T","A521T","C528A","A529G","A653G","-657A","-658G","A675C","C707T","G709A","G716A","G747A","A758C","G803A","A815G","A833C","A860G","T892C","C974T","A987G","T992G","G1019A","C1091T","A1093C","G1173A","T1174C","A1205G","A1265C","G1271T","A1289G","T1439C","G1451T","C1490A","C1517T","C1536A","G1543A","T1559C","C1615T","A1622G","G1687A","C1693T","C1706T","A1709G","C1714A","G1734-","A1735-","T1741A","A1742G","-1745A","-1747A","G1766A","A1781C","C1787T","G1794A","A1920G","C1957T","C1985G","A2002G","G2008A","T2080C","T2086C","A2140G","A2152C","A2223G","T2257C","G2332A","C2434T","C2499T","T2631C","C2644T","A2693G","A2713G","G2727A","A2752G","G2803A","A2829T","C2831T","T2863C","G3019A","C3031G","A3043G","A3097G","A3190G","C3201T","T3225C","G3226A","A3235T","A3279G","A3283C","A3334C","A3340G","T3343C","G3385A","A3435G","G3508C","T3517C","T3544C","A3607G","C3628T","C3649T","A3651G","G3664A","G3769A","A3808C","T3829C","G3846A","A3866G","C3908T","C3943T","G3989A","A4033G","T4039C","T4075C","C4076A","T4085C","G4109A","G4112A","C4132T","T4151G","T4153G","T4216C","A4246G","G4276A","A4391T","T4405C","A4432T","A4498C","G4522A","G4539A","T4540C","G4637A","C4652T","C4665T","A4677G","G4695A","G4696A","A4697G","G4708A","A4723C","A4751G","C4820T","C4871T","A4923C","C4925A","T4975C","A5063T","G5066A","G5123A","G5212A","C5237T","T5260C","C5333T","C5384T","C5397T","G5444A","A5446C","G5448A","G5463A","T5483C","G5545C","G5561A","G5566A","A5581C","T5602C","T5606G","T5611C","T5620C","T5621C","A5622T","C5659T","A5699G","T5704A","C5707T","A5711G","G5737A","G5739A","A5751G","T5778C","T5791G","A5793C","C5833T","A5865G","C5869A","G5902A","G5917T","T5964C","C5974A","C5989T","G6029A","A6030C","A6086T","A6092G","C6101A","A6159G","-6165A","-6167A","T6184G","C6190T","A6191C","A6192C","-6199T","-6201G","-6204T","-6206C","A6223-","G6224-","A6226-","G6227-","T6246A","C6278A","A6279G","A6326G","A6328G","G6336A","A6376G","G6392A","G6425A","C6446T","G6466T","G6481T","C6487T","T6562C","A6573G","G6575A","A6583G","C6641A","A6646G","C6647T","A6648C","A6689G","A6693C","A6781T","A6790C","A6798G","C6824T","A6841T","C6937A","-6957A","-6961A","-6968G","-6970A","-6973G","-6974A","-6975C","-6979G","-6980G","-6981G","-6982A","-6983A","-6994G","-6996G","-6998T","-6999C","A7037G","A7089C","A7093G","G7147A","A7155C","C7156A","A7158G","A7163-","T7165-","A7241C","G7269A","G7270A","A7313T","A7315T","G7322T","C7348T","T7622A","G7633T","C7651T","C7678A","A7689G","A7690T","T7692A","A7701G","C7747G","A7817C","T7888A","G7918A","T7921C","C7932T","A7938G","G8005C","A8014G","T8028C","G8032T","T8035C","G8036A","C8047T","C8092A","C8095A","C8103T","C8104T","G8152A","T8164C","T8176C","A8204G","A8207G","T8214A","G8216A","T8223C","C8242T","A8252T","G8261A","A8263C","T8265G","G8280T","A8314G","C8323A","C8342A","G8348A","-8370G","G8377A","A8396T","A8406G","G8407C","G8409A","T8414C","A8425C","G8430A","C8471T","T8495C","G8503A","T8537A","A8564G","G8590C","T8594C","C8603A","A8604G","T8645G","G8653A","A8666C","T8675C","G8678A","A8701T","T8711C","G8732A","C8747T","C8751T","A8762T","G8804A","A8829T","A8834G","C8840T","A8846G","G8875A","A8882C","A8886C","C8900T","A8915G","A8924T","A8929G","G8933A","T8939C","G8942A","T9074C","C9075T","G9180A"],"INT":["E11D","S24N","I31V","V72I","L101I","V112I","V113I","F126V","T206S","K219N","S255N","D288N"],"RT-p51":["K43R","T135I","I179T","T200A","R211K","K245M","D312E","A369V","M377T","K395R","E396D","E413D"],"RT-p66":["K43R","T135I","I179T","T200A","R211K","K245M","D312E","A369V","M377T","K395R","E396D","E413D","N447S","E471D","N519S"],"gp120":["E4G","N5K","E21D","V37A","E59T","T78S","I80V","L83I","N102S","T104N","-112T","-114N","-116T","E125-","F131Y","Q142R","K158E","S161N","V180I","A191T","K204D","E241K","I243M","P263T","I279V","H280P","E309D","K312N","K315R","-326N","K329-","-370G","-374T","D375E","-376G","-377T","-379S","-381G","-382S","I395V","Q412P","I463L","R472K"],"gp41":["I4F","V7F","S107T","E110D","D125E","D129G","V130E","K133R","D148E","N195K","T210I","N212S","L242S","V245I","F263L","A267V","I301V","N302D","F304Y","D305N","I307T","R317W","E320N","V321G","G326V"],"nef":["I10V","G12E","E18D","R22A","A23T","V30I","S52N","A56V","D63E","G83A","S88G","I101M","R104K","E108D","Y120F","S163C","I168M","R178K","R182Q","L194I"],"p17":["L46V","L51V","E62D","Q65R","K108R","K114Q","S125N"],"p24":["A6T","Q9H","M54T","I86V","H87Q","M96I","N121T","V148T","T171A","E180D"],"p6":["S3N","P5L","A12E","E19-","I21K","A22T","S23D","-26P","N31G","-32R","R33D","E34Q","Q35N","-36P","V39I"],"p7":["L24I","R26K","T50I"],"pro"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p7: G4S, R11K, I12M, -13I; pro: G16E, K45R; rev: E11Q, S54T, T62A, P100V, Q101E, V102T, S103G, I109V, S112P, N116K; tat: G57A, K63E; vif: H22N, L24V, K34R, N37R, F39A, R93K, Q102L, E134D, T137A, T157K, Q178R; vpr: I61T, T63I, R85Q; vpu: L4P, R47K, A50E, D58E, E60D, L61T, S62D, -79Y"}}}]},{"name":"A1_NODE_0000038","node_attrs":{"div":0.11063999999999997,"clade_membership":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["A480G","A697C","G1498A","A1783T","T1787A","G2710A","C3542T","C3682T","A4294G","A4878G","G5534A","T6193C","A6200-","A6221G","A6276G","G6336-","G6635A","A6647G","G6689A","C7124A","A7161G","A7641G","G8050A","C8595G"],"gp120":["K141R","N159S","V279I","L424I"],"gp41":["L265S"],"nef":["G83A","L85V","Y120F","D151E"],"p1":["K4R"],"p17":["S49G","D121A"],"p7":["R11K"],"rev":["D7S","A68T"],"tat":["R53K"],"vif":["I98V"]},"labels":{"aa":"gp120: K141R, N159S, V279I, L424I; gp41: L265S; nef: G83A, L85V, Y120F, D151E; p1: K4R; p17: S49G, D121A; p7: R11K; rev: D7S, A68T; tat: R53K; 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V32I, V72T, L74I, S119P, A124S, I203M, K219N, N222K; RT-p51: K20R, H121Y, S123D, S162C, I179T, T200I, S211N, S251N, A272P, T294A, F346Y, V365I, M377R, V381I, K390R, I393V, K395R; RT-p66: K20R, H121Y, S123D, S162C, I179T, T200I, S211N, S251N, A272P, T294A, F346Y, V365I, R366K, M377R, V381I, K390R, I393V, K395R, S554T, I556V; gp120: A3V, T35E, K37Q, E64N, T104K, N105E, I106V, -109V, -110T, -111A, -112A, -113N, -114S, -115T, -116E, -117E, -118M, -119M, E125-, M133I, L137I, Q142K, N157S, S160T, S161T, I173V, E183H, N201Q, E239G, A253V, N255T, P263S, N267D, T269I, K277T, R280P, T292I, D297K, Q316R, A318V, E319T, H324N, K326R, -328T, K329T, N334D, S335K, S336P, N358D, -368G, N369A, -372D, -373S, -374M, -375H, -376G, -377A, -379D, -381E, -382S, M398R, E418K, N420D, S433-, -436D, T437S, E481G; gp41: L54M, K77R, D129Q, L152F, N160T, V178I, S192A, I193L, T210P, N212S, D215E, A268T, T270I, L290V, I298T, G313N, G324R; nef: G3S, M20I, P24Q, A25P, V48T, -53V, -54T, C55-, V56-, E63D, E65D, A84S, 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A25S, H50-, P51-, S52N, -53P, -54S, V56A, G83A, L85V, I101A, E108D, Y120F, E176D, K182V, K184R, R194L; p17: T72S, T81A, Y86C, R91K, K95R, N109K, S111N, Q116K, D121E, S125N, K127N; p2: V7A; p24: S14N, G120S, T210S; p6: -36T, S51L; pro: V13I, K20R, K45R; rev: E11K, K14T, Q24K, C63Y, A68S, V108E, T114A; tat: R57E, Q60H, P73S, V80I; vif: V7A, H27Y, V31I, K50R, P58L, R63K, R67K, R92N, R93S, I98V, D101E, Q127R, Q178R, R181K; vpr: H28N, N48H, S93P; vpu: L4P, C7L, L33I, E66D, G68-, -79L, -80G"}}}]},{"name":"A1_NODE_0000044","node_attrs":{"div":0.11357999999999997,"clade_membership":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["T1787-","A2693G","G3442A","T3644A","C4585T","A4826C","G6046T","-6167A","-6170G","-6171T","-6172C","-6173A","G6725A","-6962A","-6963A","-6964C","A7275G","A7998G","A8531C","G8875A"],"RT-p51":["T200A"],"RT-p66":["T200A","L517I"],"gp120":["E64D","K265T","A291T","K326-","K474R"],"gp41":["D232G"],"nef":["R178K","L198M"],"p2":["Q8T"],"p6":["V39I"],"vif":["Q80H"]},"labels":{"aa":"RT-p51: T200A; RT-p66: T200A, L517I; gp120: E64D, K265T, A291T, K326-, K474R; gp41: D232G; nef: R178K, L198M; p2: Q8T; p6: V39I; vif: 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V72I, G134D, S153T, E167D, T218S, D278S, G283D; RT-p51: K11Q, S173L, K174Q, E177D, I179V, E248D, E250G, A272P, D312E, K366R, V376T, M403T, V435A; RT-p66: K11Q, S173L, K174Q, E177D, I179V, E248D, E250G, A272P, D312E, V376T, M403T, V435A, R512K, S515A, N519S, G527D, K558R; gp120: E4D, E34D, T35K, K37V, H57N, E59T, D64N, K93Q, T104S, N105S, -107T, -109T, -110S, -111N, -113V, -114N, -115S, -116T, -117G, -118G, -119R, -120K, -121V, -122D, -123Q, I126M, E158G, R201N, E203K, K212N, G240Q, K241E, T265N, N267T, T269L, A288T, Y290F, H302Y, N304V, S308T, K309Q, R315Y, Q316N, A318S, E319V, -328N, I332R, N335S, G351R, G361R, -368F, N378-, -383S, T385N, V402A, Q412K, V414M, V418E, I425M, N434S, N435T, T437-, V468I, R472T; gp41: H53Q, K56R, V72L, R77K, K90R, K106R, N109S, Q119E, K122R, N133R, E137D, L150M, A151S, N157D, D163Q, K172R, I175V, H209L, T210A, E223G, G232D, A267V, A268G, R269H, T270S, V271S, E272L, L273R, L274G, G275L, V318I, G322A, G324A, H331N; nef: I10K, V11P, G29A, K39R, S46T, L85F, 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-81L"}}},{"name":"KF716475","node_attrs":{"div":0.16785999999999995,"accession":"KF716475","clade_membership":{"value":"A1"},"country":{"value":"KE"},"date":{"value":2011.0},"Strain_name":{"value":"DEMA11KE001"},"LANL_subtype":{"value":"A1"}},"branch_attrs":{"mutations":{"nuc":["A263G","G317A","G413A","A416G","A417G","A418C","T435C","A461G","T467C","G542C","T560C","A563G","C606A","A653G","C672A","G687A","G706A","A708C","G716T","C767T","T771A","C772A","G837A","A866T","C879T","A881T","C902T","C917T","A959G","G977A","T992A","C1094T","C1136T","A1205G","T1220C","G1256A","A1343C","T1344C","G1418A","T1481C","G1486A","G1493A","G1508A","T1511C","C1514T","C1541T","T1559G","A1588G","G1642A","T1646C","T1682A","A1736C","C1750T","G1760A","A1772G","-1785G","-1786G","-1787T","T1790A","C1825A","T1909G","A1932G","A1951G","T1954C","G1963A","G1972A","T1978G","C1985G","T2035C","T2087C","A2212T","T2338C","G2380A","G2389A","C2392T","C2393T","C2434T","C2456G","A2508C","A2557G","T2632C","G2710A","G2727A","A2752G","C2797T","A2842G","A2845C","A2962G","T2968G","G3016A","G3044A","T3045C","C3067A","A3116G","A3151G","G3168A","G3200A","C3252T","A3292T","C3307T","G3370A","C3376T","T3399A","A3442G","G3448A","C3469A","A3543T","T3544C","G3617T","A3637G","G3643A","A3703G","A3736G","C3751T","T3755A","T3778C","C3808A","A3817G","A3866G","G3877A","G3997A","G4228A","T4234C","G4243A","A4264C","G4276A","C4579T","G4581A","C4652T","C4665T","T4702G","A4722T","C4728A","T4738C","C4820A","G4855A","C4937A","G4949A","C4976T","A4994T","T5028C","A5048T","A5054T","C5062T","G5066A","T5073C","G5094A","A5122G","C5149T","G5185A","C5186A","T5209A","C5213A","C5214T","A5215G","A5233G","C5248T","A5285G","A5287C","C5294T","A5302G","C5306T","T5327C","G5444A","C5445T","A5462G","G5463A","A5480C","T5483C","G5493A","A5556C","A5585C","T5611A","T5612A","C5620A","A5621C","A5655G","G5687C","A5699G","C5707T","G5747A","C5756A","A5790T","T5791G","C5792A","A5793T","A5794G","C5795A","C5797T","T5799G","A5800G","T5801C","T5802G","A5804C","G5808T","G5809T","G5811T","-5815G","-5816A","-5817G","-5818A","-5819T","-5820G","-5821G","-5822G","-5823G","-5824A","C5826T","A5831G","A5843-","T5844-","G5864C","T5885C","G5917C","C5922T","G5956A","T5992C","A6015G","A6016T","C6023T","C6052T","A6066G","T6142A","T6171C","-6174A","A6177G","-6180T","A6188G","C6189T","G6195T","T6196C","G6198A","C6199T","-6201A","-6204A","-6205G","-6207T","-6208C","-6210A","-6211C","-6212T","-6213T","-6215C","-6216G","-6220G","A6221G","G6223A","A6225G","C6241T","G6262A","C6278A","C6305T","T6306C","A6311G","C6317T","T6322G","A6328T","T6331G","A6333G","A6338G","G6339A","T6340G","A6349G","G6368A","G6379A","G6401C","G6442A","A6456G","T6460C","A6470G","G6481A","C6482T","G6575C","A6605G","C6618T","A6639G","G6640T","T6643C","A6647C","A6664G","A6682C","A6686-","G6687-","T6688-","G6689-","T6690-","A6691-","C6692G","-6697A","-6698C","-6699A","-6700T","-6701A","-6702T","A6706G","A6725G","T6730A","A6732C","C6752A","A6771G","T6772C","G6774A","G6779A","A6790C","A6798G","-6830A","-6831A","-6832A","C6835T","-6836G","-6838T","A6840C","A6848G","A6850G","T6856G","A6910G","T6922C","-6958T","-6959A","-6965A","-6966C","-6967T","-6968T","-6969G","-6970G","-6971T","-6972C","-6974C","-6975T","-6976T","-6977A","-6979C","G6980A","A6981G","A6989G","G6990A","-6994A","-6995G","A6996G","-6998A","-6999T","C7006T","T7009C","A7100C","A7127C","T7144G","A7161G","A7162C","C7164A","G7275A","G7307A","A7312T","A7313C","G7343A","C7344T","A7345G","A7375G","C7397A","A7399C","T7516C","G7517A","A7573G","C7574G","C7625T","G7627C","A7643G","C7645A","T7656A","T7666G","G7701A","A7706C","C7747T","G7759C","G7777A","G7790A","T7876C","A7880G","G7890A","T7912C","G7918A","T7930C","A7931C","C7932T","T7948A","G8050A","T8094C","T8171C","T8205C","C8221T","A8222G","G8267A","G8273A","T8290C","G8323T","T8348C","T8414C","C8415T","A8469G","T8483C","G8484A","C8498T","T8509C","G8522A","T8567C","A8570C","T8582A","G8590C","C8595A","G8597A","A8667C","G8717T","T8720C","A8739G","C8740T","T8746A","A8753G","A8754T","C8755G","A8756C","T8789C","T8795A","C8812A","G8843T","A8852G","G8880A","T8881C","A8886G","A8887T","A8893G","G8894A","C8913T","G8923C","A8924G","C8934A","A8952G","A8954G","-9109T"],"INT":["D11E","I31V","R269K"],"RT-p51":["H121D","E138A","S211N","E250D","D291E","V317T","D324E","I341V","R358K","A369T","T386I","E399D","V435E"],"RT-p66":["H121D","E138A","S211N","E250D","D291E","V317T","D324E","I341V","R358K","R366K","A369T","T386I","E399D","V435E","Y483L","A508S","S554T"],"gp120":["E4Q","Y11H","E21D","T23I","Q54R","H57Y","N71S","T104-","N105-","V106-","N108-","T112-","-122E","-123G","E124G","Q142K","L151S","I153V","P155S","I156M","E158S","D159N","N160E","A172T","E183Q","N206D","P210S","V242Q","I243V","N251D","T255I","V261A","K262S","T265Q","R276S","S278G","V279I","R280H","T291A","N292R","D293N","I294A","Q300K","N306S","R307K","E312D","-326K","-328D","K329T","I332V","N334K","-368S","-372Q","-373S","-379D","-380T","-381G","-382I","-383N","R416Q","I425L","N433V","E436G","T437N","R474K"],"gp4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D11E, I31V, R269K; RT-p51: H121D, E138A, S211N, E250D, D291E, V317T, D324E, I341V, R358K, A369T, T386I, E399D, V435E; RT-p66: H121D, E138A, S211N, E250D, D291E, V317T, D324E, I341V, R358K, R366K, A369T, T386I, E399D, V435E, Y483L, A508S, S554T; gp120: E4Q, Y11H, E21D, T23I, Q54R, H57Y, N71S, T104-, N105-, V106-, N108-, T112-, -122E, -123G, E124G, Q142K, L151S, I153V, P155S, I156M, E158S, D159N, N160E, A172T, E183Q, N206D, P210S, V242Q, I243V, N251D, T255I, V261A, K262S, T265Q, R276S, S278G, V279I, R280H, T291A, N292R, D293N, I294A, Q300K, N306S, R307K, E312D, -326K, -328D, K329T, I332V, N334K, -368S, -372Q, -373S, -379D, -380T, -381G, -382I, -383N, R416Q, I425L, N433V, E436G, T437N, R474K; gp41: V2I, I4G, A14M, I24M, Q32N, V72M, L91V, L108Y, N114E, L118Q, D121E, I135L, L152F, D163K, I193V, R196K, T210L, I264T, I301T, I307V, G322R, G324R, L340F; nef: I16V, P25S, I43V, V48I, V56A, G83A, L85I, I109L, Q125H, T133V, F135Y, T138C, D151E, T157N, E176D, V180T, K182V, K184R, L191F, R194T, K204E; p17: K28A, K69N, Q113K, A118T, S125R, K127N; p24: S14N, V36I, E45D, Q50Y, G120S; p6: E19D, S23F, -36G, L38P, I39S, P49Q; p7: R7K, K41R; pro: K14R, D37E, K45R, D60E, L63V; rev: K14T, Y28P, S34T, A68T, V108A; tat: S23N, K29R, Q35P, V36A, Q60H, Q70P, L74T, P75S, V80D; vif: H27Y, F39C, S46C, H48N, V51A, D78E, R90K, D117E, Q136H, T159I, A170T, K179R, T188I; vpr: H28N, P37M, I61V; vpu: L2N, L4W, L5N, G27A, K31R, R47K, A50E, S62A, T63A, I65C, -69N, -70Y, -71G, -72L, -73G, -74D, -75N, -76N, 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S39C, M50I, A124G, Q216H; RT-p51: E40D, K49R, D312E, K366R; RT-p66: E40D, K49R, D312E, R512K; gp120: H57P, -110T, I126L, P155Q, N157D, E158K, K212N, H302Y, T366S, -373S, N378-, D384-, T471N, R472T; gp41: E110D, H209L, G230D, I264T, L290V, R294Q, I298T, I329F, H331N; p17: N124S; p24: T207A, G225S, V230I; p6: I14L, C15F; p7: Q9G, K10Q, R11K, I12R, -13I; pro: K14R, K20R; rev: S67P, L73F, S106P, V108G; tat: R57G; vif: H22N, T74P, T137A; vpr: 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S17T, L101I, V113I; RT-p51: K64R, P243S, M245K, E248D, Q334H, M377L, S379A, K388R; RT-p66: K64R, P243S, M245K, E248D, Q334H, M377L, S379A, K388R, I517L, N519S, Q520L, S554A, K558R; gp120: A3G, E4G, N5S, K18R, E34D, V40I, N52D, E59K, K93Q, V106A, -107G, -109D, -111N, -113N, -114T, -115T, -116I, E124G, M133V, L137I, Y145H, S146A, R150K, I153V, D159A, A172V, V180I, S181K, E203T, S228T, K241E, T250S, V261A, K262E, P263S, N272G, R276K, K277R, R280H, F289L, D293N, D297N, Q300E, N304K, R307G, K309Q, E312N, E319D, Q320K, K323E, -328D, N334K, N335H, N349T, S360T, G361K, -368S, -372D, -374T, -375D, -376G, R391K, Q404R, P409N, V414K, R416E, V418A, N433V, N434S, N435R, T437N, N471H; gp41: I4M, I24L, V69I, E109Q, L118Q, D129E, N133R, N157S, S165T, A189T, R196K, N212S, S251N, T264A, A267V, G293S, T298N, N302S, V304I, A310V, I321V, I325L, I336V; nef: P28T, V48T, N49-, H50-, P51-, S52-, C55-, V56-, E59A, I101T, E108D, V146E, D151A, T157N, E176D, K182R, L191F, K192R, M198E; p1: S9N; p17: A15R, K18V, T84V, D93E, T115R, A118T, K127N, V128A; p24: I2V, T48A, I58V, P111I, D128E, K131R; p6: R4G, E19G, R33Q, -36A, L38P, I39S, K42R; p7: R7K, R12K, K34R; pro: V13I, D37E, K57R, K70R, M89L; rev: E11D, Q24K, S54T, I55L, E57K, T62A, P72S, L78I, H82R, V102I, G111E, K115E, N116K; tat: Q35P, T58P, T77A; vif: V7A, V31I, N37G, F39Y, E45Q, R92K, I98V, Q102S, E134D, R167K, Q178R; vpr: R85Q, S93P; vpu: L5D, L16A, L18I, V21I, K31T, K32R, K38R, L42I, E48Q, M67L, -69D, -70Y, -71D, -72L, -73G, -79V, -80N, D81N"}}}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]}]},"root_sequence":{"INT":"FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTGATVRAACWWAGIKQEFGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIATDIQTKELQKQITKIQNFRVYYRDSRNPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED","RT-p51":"PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETF","RT-p66":"PISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVIPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETWETWWTEYWQATWIPEWEFVNTPPLVKLWYQLEKEPIVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTLTDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIIQAQPDQSESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVL","gp120":"SATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKR","gp41":"AVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERILL","nef":"MGGKWSKSSVIGWPTVRERMRRAEPAADRVGAASRDLEKHGAITSSNTAATNAACAWLEAQEEEEVGFPVTPQVPLRPMTYKAAVDLSHFLKEKGGLEGLIHSQRRQDILDLWIYHTQGYFPD*QNYTPGPGVRYPLTFGWCYKLVPVEPDKIEEANKGENTSLLHPVSLHGMDDPEREVLEWRFDSRLAFHHVARELHPEYFKNC*","nuc":"GGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAACTAGAGATCCCTCAGACCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACCTGAAAGCGAAAGGGAAACCAGAGGAGCTCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACTGGTGAGTACGCCAAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTATTAAGCGGGGGAGAATTAGATCGATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATAAATTAAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCAGAAGGCTGTAGACAAATACTGGGACAGCTACAACCATCCCTTCAGACAGGATCAGAAGAACTTAGATCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGGATAGAGATAAAAGACACCAAGGAAGCTTTAGACAAGATAGAGGAAGAGCAAAACAAAAGTAAGAAAAAAGCACAGCAAGCAGCAGCTGACACAGGACACAGCAATCAGGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAGAAGGCTTTCAGCCCAGAAGTGATACCCATGTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACATCAAGCAGCCATGCAAATGTTAAAAGAGACCATCAATGAGGAAGCTGCAGAATGGGATAGAGTGCATCCAGTGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAGTACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATTTATAAAAGATGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGACATAAGACAAGGACCAAAGGAACCCTTTAGAGACTATGTAGACCGGTTCTATAAAACTCTAAGAGCCGAGCAAGCTTCACAGGAGGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAACCCAGATTGTAAGACTATTTTAAAAGCATTGGGACCAGCGGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTAGGAGGACCCGGCCATAAGGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAAATTCAGCTACCATAATGATGCAGAGAGGCAATTTTAGGAACCAAAGAAAGATTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACACAGCCAGAAATTGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACACCAAATGAAAGATTGTACTGAGAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCTACAAGGGAAGGCCAGGGAATTTTCTTCAGAGCAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTCTGGGGTAGAGACAACAACTCCCCCTCAGAAGCAGGAGCCGATAGACAAGGAACTGTATCCTTTAACTTCCCTCAGGTCACTCTTTGGCAACGACCCCTCGTCACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTATTAGAAGAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGGGGAATTGGAGGTTTTATCAAAGTAAGACAGTATGATCAGATACTCATAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACCTGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGCCCTATTGAGACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAGAAAAAATAAAAGCATTAGTAGAAATTTGTACAGAGATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCCTGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAAGACAGTACTAAATGGAGAAAATTAGTAGATTTCAGAGAACTTAATAAGAGAACTCAAGACTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAGGGTTAAAAAAGAAAAAATCAGTAACAGTACTGGATGTGGGTGATGCATATTTTTCAGTTCCCTTAGATGAAGACTTCAGGAAGTATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAGTACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAGAGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGACTTAGAAATAGGGCAGCATAGAACAAAAATAGAGGAGCTGAGACAACATCTGTTGAGGTGGGGACTTACCACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAATGGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGGGAAATTGAATTGGGCAAGTCAGATTTACCCAGGGATTAAAGTAAGGCAATTATGTAAACTCCTTAGAGGAACCAAAGCACTAACAGAAGTAATACCACTAACAGAAGAAGCAGAGCTAGAACTGGCAGAAAACAGAGAGATTCTAAAAGAACCAGTACATGGAGTGTATTATGACCCATCAAAAGACTTAATAGCAGAAATACAGAAGCAGGGGCAAGGCCAATGGACATATCAAATTTATCAAGAGCCATTTAAAAATCTGAAAACAGGAAAATATGCAAGAATGAGGGGTGCCCACACTAATGATGTAAAACAATTAACAGAGGCAGTGCAAAAAATAACCACAGAAAGCATAGTAATATGGGGAAAGACTCCTAAATTTAAACTGCCCATACAAAAGGAAACATGGGAAACATGGTGGACAGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTTAATACCCCTCCCTTAGTGAAATTATGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACCTTCTATGTAGATGGGGCAGCTAACAGGGAGACTAAATTAGGAAAAGCAGGATATGTTACTAATAGAGGAAGACAAAAAGTTGTCACCCTAACTGACACAACAAATCAGAAGACTGAGTTACAAGCAATTTATCTAGCTTTGCAGGATTCGGGATTAGAAGTAAACATAGTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATCAAAGTGAATCAGAGTTAGTCAATCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTATCTGGCATGGGTACCAGCACACAAAGGAATTGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGGAAAGTACTATTTTTAGATGGAATAGATAAGGCCCAAGATGAACATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAGTGATTTTAACCTGCCACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGGACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAGTTATCCTGGTAGCAGTTCATGTAGCCAGTGGATATATAGAAGCAGAAGTTATTCCAGCAGAAACAGGGCAGGAAACAGCATATTTTCTTTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAATACATACTGACAATGGCAGCAATTTCACCGGTGCTACGGTTAGGGCCGCCTGTTGGTGGGCGGGAATCAAGCAGGAATTTGGAATTCCCTACAATCCCCAAAGTCAAGGAGTAGTAGAATCTATGAATAAAGAATTAAAGAAAATTATAGGACAGGTAAGAGATCAGGCTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGGGGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAACAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAAATCCACTTTGGAAAGGACCAGCAAAGCTCCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAGAAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGCAGGTGATGATTGTGTGGCAAGTAGACAGGATGAGGATTAGAACATGGAAAAGTTTAGTAAAACACCATATGTATGTTTCAGGGAAAGCTAGGGGATGGTTTTATAGACATCACTATGAAAGCCCTCATCCAAGAATAAGTTCAGAAGTACACATCCCACTAGGGGATGCTAGATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGTCAGGGAGTCTCCATAGAATGGAGGAAAAAGAGATATAGCACACAAGTAGACCCTGAACTAGCAGACCAACTAATTCATCTGTATTACTTTGACTGTTTTTCAGACTCTGCTATAAGAAAGGCCTTATTAGGACACATAGTTAGCCCTAGGTGTGAATATCAAGCAGGACATAACAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAATAACACCAAAAAAGATAAAGCCACCTTTGCCTAGTGTTACGAAACTGACAGAGGATAGATGGAACAAGCCCCAGAAGACCAAGGGCCACAGAGGGAGCCACACAATGAATGGACACTAGAGCTTTTAGAGGAGCTTAAGAATGAAGCTGTTAGACATTTTCCTAGGATTTGGCTCCATGGCTTAGGGCAACATATCTATGAAACTTATGGGGATACTTGGGCAGGAGTGGAAGCCATAATAAGAATTCTGCAACAACTGCTGTTTATCCATTTTCAGAATTGGGTGTCGACATAGCAGAATAGGCGTTACTCGACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAGAGCCCTGGAAGCATCCAGGAAGTCAGCCTAAAACTGCTTGTACCAATTGCTATTGTAAAAAGTGTTGCTTTCATTGCCAAGTTTGTTTCATAACAAAAGCCTTAGGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGACGAAGAGCTCATCAGAACAGTCAGACTCATCAAGCTTCTCTATCAAAGCAGTAAGTAGTACATGTAATGCAACCTATACCAATAGTAGCAATAGTAGCATTAGTAGTAGCAATAATAATAGCAATAGTTGTGTGGTCCATAGTAATCATAGAATATAGGAAAATATTAAGACAAAGAAAAATAGACAGGTTAATTGATAGACTAATAGAAAGAGCAGAAGACAGTGGCAATGAGAGTGAAGGAGAAATATCAGCACTTGTGGAGATGGGGGTGGAGATGGGGCACCATGCTCCTTGGGATGTTGATGATCTGTAGTGCTACAGAAAAATTGTGGGTCACAGTCTATTATGGGGTACCTGTGTGGAAGGAAGCAACCACCACTCTATTTTGTGCATCAGATGCTAAAGCATATGATACAGAGGTACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTATTGGTAAATGTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCATGAGGATATAATCAGTTTATGGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTAGTTTAAAGTGCACTGATTTGAAGAATGATACTAATACCAATAGTAGTAGCGGGAGAATGATAATGGAGAAAGGAGAGATAAAAAACTGCTCTTTCAATATCAGCACAAGCATAAGAGGTAAGGTGCAGAAAGAATATGCATTTTTTTATAAACTTGATATAATACCAATAGATAATGATACTACCAGCTATAAGTTGACAAGTTGTAACACCTCAGTCATTACACAGGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCGGCTGGTTTTGCGATTCTAAAATGTAATAATAAGACGTTCAATGGAACAGGACCATGTACAAATGTCAGCACAGTACAATGTACACATGGAATTAGGCCAGTAGTATCAACTCAACTGCTGTTAAATGGCAGTCTAGCAGAAGAAGAGGTAGTAATTAGATCTGTCAATTTCACGGACAATGCTAAAACCATAATAGTACAGCTGAACACATCTGTAGAAATTAATTGTACAAGACCCAACAACAATACAAGAAAAAGAATCCGTATCCAGAGAGGACCAGGGAGAGCATTTGTTACAATAGGAAAAATAGGAAATATGAGACAAGCACATTGTAACATTAGTAGAGCAAAATGGAATAACACTTTAAAACAGATAGCTAGCAAATTAAGAGAACAATTTGGAAATAATAAAACAATAATCTTTAAGCAATCCTCAGGAGGGGACCCAGAAATTGTAACGCACAGTTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACACAACTGTTTAATAGTACTTGGTTTAATAGTACTTGGAGTACTGAAGGGTCAAATAACACTGAAGGAAGTGACACAATCACCCTCCCATGCAGAATAAAACAAATTATAAACATGTGGCAGAAAGTAGGAAAAGCAATGTATGCCCCTCCCATCAGTGGACAAATTAGATGTTCATCAAATATTACAGGGCTGCTATTAACAAGAGATGGTGGTAATAGCAACAATGAGTCCGAGATCTTCAGACCTGGAGGAGGAGATATGAGGGACAATTGGAGAAGTGAATTATATAAATATAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAAAAAAGAGCAGTGGGAATAGGAGCTTTGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCGCAGCCTCAATGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAGCAGCAGAACAATTTGCTGAGGGCTATTGAGGCGCAACAGCATCTGTTGCAACTCACAGTCTGGGGCATCAAGCAGCTCCAGGCAAGAATCCTGGCTGTGGAAAGATACCTAAAGGATCAACAGCTCCTGGGGATTTGGGGTTGCTCTGGAAAACTCATTTGCACCACTGCTGTGCCTTGGAATGCTAGTTGGAGTAATAAATCTCTGGAACAGATTTGGAATCACACGACCTGGATGGAGTGGGACAGAGAAATTAACAATTACACAAGCTTAATACACTCCTTAATTGAAGAATCGCAAAACCAGCAAGAAAAGAATGAACAAGAATTATTGGAATTAGATAAATGGGCAAGTTTGTGGAATTGGTTTAACATAACAAATTGGCTGTGGTATATAAAATTATTCATAATGATAGTAGGAGGCTTGGTAGGTTTAAGAATAGTTTTTGCTGTACTTTCTATAGTGAATAGAGTTAGGCAGGGATATTCACCATTATCGTTTCAGACCCACCTCCCAACCCCGAGGGGACCCGACAGGCCCGAAGGAATAGAAGAAGAAGGTGGAGAGAGAGACAGAGACAGATCCATTCGATTAGTGAACGGATCCTTGGCACTTATCTGGGACGATCTGCGGAGCCTGTGCCTCTTCAGCTACCACCGCTTGAGAGACTTACTCTTGATTGTAACGAGGATTGTGGAACTTCTGGGACGCAGGGGGTGGGAAGCCCTCAAATATTGGTGGAATCTCCTACAGTATTGGAGTCAGGAACTAAAGAATAGTGCTGTTAGCTTGCTCAATGCCACAGCCATAGCAGTAGCTGAGGGGACAGATAGGGTTATAGAAGTAGTACAAGGAGCTTGTAGAGCTATTCGCCACATACCTAGAAGAATAAGACAGGGCTTGGAAAGGATTTTGCTATAAGATGGGTGGCAAGTGGTCAAAAAGTAGTGTGATTGGATGGCCTACTGTAAGGGAAAGAATGAGACGAGCTGAGCCAGCAGCAGATAGGGTGGGAGCAGCATCTCGAGACCTGGAAAAACATGGAGCAATCACAAGTAGCAATACAGCAGCTACCAATGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAGGAGGAGGTGGGTTTTCCAGTCACACCTCAGGTACCTTTAAGACCAATGACTTACAAGGCAGCTGTAGATCTTAGCCACTTTTTAAAAGAAAAGGGGGGACTGGAAGGGCTAATTCACTCCCAAAGAAGACAAGATATCCTTGATCTGTGGATCTACCACACACAAGGCTACTTCCCTGATTAGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATGGTGCTACAAGCTAGTACCAGTTGAGCCAGATAAGATAGAAGAGGCCAATAAAGGAGAGAACACCAGCTTGTTACACCCTGTGAGCCTGCATGGGATGGATGACCCGGAGAGAGAAGTGTTAGAGTGGAGGTTTGACAGCCGCCTAGCATTTCATCACGTGGCCCGAGAGCTGCATCCGGAGTACTTCAAGAACTGCTGACATCGAGCTTGCTACAAGGGACTTTCCGCTGGGGACTTTCCAGGGAGGCGTGGCCTGGGCGGGACTGGGGAGTGGCGAGCCCTCAGATCCTGCATATAAGCAGCTGCTTTTTGCCTGTACTGGGTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAACTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTTGAGTGCTTC","p1":"FLGKIWPSYKGRPGNF","p17":"MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQTGSEELRSLYNTVATLYCVHQRIEIKDTKEALDKIEEEQNKSKKKAQQAAADTGHSNQVSQNY","p2":"AEAMSQVTNSATIM","p24":"PIVQNIQGQMVHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVL","p6":"LQSRPEPTAPPEESFRSGVETTTPPQKQEPIDKELYPLTSLRSLFGNDPSSQ","p7":"MQRGNFRNQRKIVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQAN","pro":"PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNF","rev":"MAGRSGDSDEELIRTVRLIKLLYQSNPPPNPEGTRQARRNRRRRWRERQRQIHSISERILGTYLGRSAEPVPLQLPPLERLTLDCNEDCGTSGTQGVGSPQILVESPTVLESGTKE*","tat":"MEPVDPRLEPWKHPGSQPKTACTNCYCKKCCFHCQVCFITKALGISYGRKKRRQRRRAHQNSQTHQASLSKQPTSQPRGDPTGPKE*","vif":"MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH*","vpr":"MEQAPEDQGPQREPHNEWTLELLEELKNEAVRHFPRIWLHGLGQHIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGVTRQRRARNGASRS*","vpu":"MQPIPIVAIVALVVAIIIAIVVWSIVIIEYRKILRQRKIDRLIDRLIERAEDSGNESEGEISALVEMGVEMGHHAPWDVDDL*"}} \ No newline at end of file diff --git a/data_output/index.json b/data_output/index.json index 0bd3987b..59c8fcfd 100644 --- a/data_output/index.json +++ b/data_output/index.json @@ -2432,7 +2432,7 @@ } }, { - "path": "community/neherlab/hiv-1", + "path": "community/neherlab/hiv-1/hxb2", "enabled": true, "attributes": { "name": "HIV-1 (HXB2)", diff --git a/data_output/minimizer_index.json b/data_output/minimizer_index.json index d9b495b9..1c3bbf01 100644 --- a/data_output/minimizer_index.json +++ b/data_output/minimizer_index.json @@ -85835,7 +85835,7 @@ "nMinimizers": 44 }, { - "name": "community/neherlab/hiv-1", + "name": "community/neherlab/hiv-1/hxb2", "length": 9181, "nMinimizers": 544 }, From 8f4e1422f7b79d8ceaa27509f13da5c4e06f603d Mon Sep 17 00:00:00 2001 From: ivan-aksamentov Date: Mon, 6 May 2024 16:49:46 +0200 Subject: [PATCH 08/12] chore: remove old data output leftover after renaming --- .../neherlab/hiv-1/unreleased/CHANGELOG.md | 3 - .../neherlab/hiv-1/unreleased/README.md | 35 - .../neherlab/hiv-1/unreleased/dataset.zip | Bin 8263855 -> 0 bytes .../hiv-1/unreleased/genome_annotation.gff3 | 27 - .../neherlab/hiv-1/unreleased/pathogen.json | 100 - .../neherlab/hiv-1/unreleased/reference.fasta | 155 - .../neherlab/hiv-1/unreleased/sequences.fasta | 4803 ----------------- .../neherlab/hiv-1/unreleased/tree.json | 1 - 8 files changed, 5124 deletions(-) delete mode 100644 data_output/community/neherlab/hiv-1/unreleased/CHANGELOG.md delete mode 100644 data_output/community/neherlab/hiv-1/unreleased/README.md delete mode 100644 data_output/community/neherlab/hiv-1/unreleased/dataset.zip delete mode 100644 data_output/community/neherlab/hiv-1/unreleased/genome_annotation.gff3 delete mode 100644 data_output/community/neherlab/hiv-1/unreleased/pathogen.json delete mode 100644 data_output/community/neherlab/hiv-1/unreleased/reference.fasta delete mode 100644 data_output/community/neherlab/hiv-1/unreleased/sequences.fasta delete mode 100644 data_output/community/neherlab/hiv-1/unreleased/tree.json diff --git a/data_output/community/neherlab/hiv-1/unreleased/CHANGELOG.md b/data_output/community/neherlab/hiv-1/unreleased/CHANGELOG.md deleted file mode 100644 index 1f43c256..00000000 --- a/data_output/community/neherlab/hiv-1/unreleased/CHANGELOG.md +++ /dev/null @@ -1,3 +0,0 @@ -## Unreleased - -Initial release of an HIV-1 dataset for subtype classification. diff --git a/data_output/community/neherlab/hiv-1/unreleased/README.md b/data_output/community/neherlab/hiv-1/unreleased/README.md deleted file mode 100644 index e4e4e365..00000000 --- a/data_output/community/neherlab/hiv-1/unreleased/README.md +++ /dev/null @@ -1,35 +0,0 @@ -# EXPERIMENTAL: HIV-1 group M subtype and CRF classification - -| Key | Value | -| ---------------------- | --------------------------------------------------------------------------------------------------------------------| -| authors | [Richard Neher (U Basel)](https://neherlab.org), [Thomas Leitner (LANL)](https://public.lanl.gov/tkl/) | -| data source | LANL database and Genbank | -| workflow | [github.com/neherlab/HIV-nextclade](https://github.com/neherlab/HIV-nextclade) | -| nextclade dataset path | neherlab/hiv-1 | -| reference | [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) | - -This Nextclade data set aligns sequences to the HXB2 reference and finds the closest match in a reference tree build from the [2021 Super filtered Alignment](https://www.hiv.lanl.gov/content/sequence/NEWALIGN/help.html#filter) provided by LANL. -Due to extensive recombination in HIV-1 group M, the tree is not a proper phylogenetic tree, but a collection of trees inferred for each subtype or recombinant form. These individuals trees are then grafted together. Rare CRFs, URFs, or subtypes represented less then 3 times in the reference alignment are labeled as subtype `other`. - -Note that the classification is **EXPERIMENTAL** and might be unreliable for sequences that lack a close representative in the tree. -The closeness to sequences in the reference set is quantified by the `private mutations` -As a general guide, the more private mutations a sequence has, the less reliable the subtype assignment will be. - -Note that alignments of sequences that are far from the subtype B HXB2 reference will have - -## Reference sequence HXB2 (NC_001802) - -This data set uses the NCBI reference sequence [NC_001802](https://www.ncbi.nlm.nih.gov/nuccore/NC_001802) based on the HXB2 genome [K03455](https://www.ncbi.nlm.nih.gov/nuccore/K03455.1). The primary reason for choosing it is to ensure amino acid substitutions in conserved proteins such as `Pol` are numbered consistently. -Note that this sequence as a few problems, including a premature stop-codon in `nef`. - -## Treatment of indel-rich regions - -There are multiple regions in the HIV-1 genome where deletions and insertions are common. Such regions are often not consistently aligned when aligning sequences individually to a reference. For the purposes of finding closely matching sequences in the reference tree, these regions are ignored. 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