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Releases: nextstrain/nextclade_data

2024-11-19--14-18-53Z

19 Nov 14:19
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2024-11-19--14-18-53Z
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This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
  • Mpox virus (All clades) (nextstrain/mpox/all-clades)
  • Mpox virus (Clade I) (nextstrain/mpox/clade-i)
  • Mpox virus (Clade IIb) (nextstrain/mpox/clade-iib)
  • Mpox virus (Lineage B.1) (nextstrain/mpox/lineage-b.1)
  • H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

Fix duplicate changelog entry, nothing else changed.

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

Fix duplicate changelog entry, nothing else changed.

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

Fix duplicate changelog entry, nothing else changed.

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

Fix duplicate changelog entry, nothing else changed.

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

Fix duplicate changelog entry, nothing else changed.

Mpox virus (All clades) (nextstrain/mpox/all-clades)

Mpox virus (Clade I) (nextstrain/mpox/clade-i)

  • Newly shared sequences are now included

Mpox virus (Clade IIb) (nextstrain/mpox/clade-iib)

  • 11 newly designated B.1 sublineages are now included. See mpxv-lineages/lineage-designation#45 for details.
  • Newly shared sequences are now included
  • The cluster QC metric's window size has been broadened to detect clusters that span a region of up to 1000bp (up from 100bp)

Mpox virus (Lineage B.1) (nextstrain/mpox/lineage-b.1)

  • 11 newly designated B.1 sublineages are now included. See mpxv-lineages/lineage-designation#45 for details.
  • Newly shared sequences are now included
  • The cluster QC metric's window size has been broadened to detect clusters that span a region of up to 1000bp (up from 100bp)

H5Nx clade 2.3.4.4 (community/moncla-lab/iav-h5/ha/2.3.4.4)

Updated tree.json to add mutation calling relative to A/American_wigeon/North_Carolina/AH0182517/2022

Assets 12
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2024-11-14--17-22-16Z

14 Nov 17:22
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2024-11-14--17-22-16Z
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2024-11-14--17-22-16Z

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Add newly designated Nextstrain clades 24H (LF.7) and 24I (MV.1)
  • Add all 128 Pango lineages newly designated between 2024-10-19 and 2024-11-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • LF.7.1 (2024-10-19)
  • LF.7.1.1 (2024-10-19)
  • LF.7.2 (2024-10-19)
  • LF.7.2.1 (2024-10-19)
  • LF.7.3 (2024-10-19)
  • LF.7.4 (2024-10-19)
  • JN.1.49.3 (2024-10-20)
  • MV.2 (2024-10-20)
  • MB.1.1.2 (2024-10-20)
  • MB.1.1.3 (2024-10-20)
  • NA.1 (2024-10-20)
  • NA.1.1 (2024-10-20)
  • XDV.1.5.1 (2024-10-20)
  • NB.1 (2024-10-20)
  • KS.1.1.1 (2024-10-20)
  • KS.1.1.2 (2024-10-20)
  • LF.3.1.2 (2024-10-20)
  • XEL (2024-10-20)
  • NC.1 (2024-10-20)
  • ND.1 (2024-10-20)
  • ND.1.1 (2024-10-20)
  • ND.2 (2024-10-20)
  • ND.3 (2024-10-20)
  • MC.10.1 (2024-10-20)
  • KP.2.2.1 (2024-10-20)
  • KP.2.25.1 (2024-10-20)
  • KP.2.25.2 (2024-10-20)
  • KP.2.25.3 (2024-10-20)
  • MD.3.1.1 (2024-10-20)
  • MD.3.1.2 (2024-10-20)
  • MD.3.1.3 (2024-10-20)
  • MD.3.1.4 (2024-10-20)
  • MD.1.2 (2024-10-20)
  • MD.1.1.1 (2024-10-20)
  • KP.3.2.6 (2024-10-21)
  • MC.1.1 (2024-10-21)
  • MC.18 (2024-10-21)
  • KP.2.27 (2024-10-22)
  • KP.2.3.8 (2024-10-22)
  • KP.2.2.2 (2024-10-22)
  • XEM (2024-10-22)
  • KP.3.1.9 (2024-10-22)
  • KP.1.1.6 (2024-10-23)
  • NE.1 (2024-10-23)
  • XEN (2024-10-23)
  • NF.1 (2024-10-24)
  • KP.2.3.9 (2024-10-24)
  • NG.1 (2024-10-24)
  • NH.1 (2024-10-24)
  • NH.2 (2024-10-24)
  • NH.3 (2024-10-24)
  • JN.1.11.2 (2024-10-25)
  • NJ.1 (2024-10-25)
  • KP.2.3.10 (2024-10-25)
  • NK.1 (2024-10-25)
  • LP.5 (2024-10-25)
  • LP.6 (2024-10-25)
  • LP.7 (2024-10-25)
  • KP.2.3.11 (2024-10-25)
  • LD.2 (2024-10-25)
  • KP.3.1.10 (2024-10-25)
  • NL.1 (2024-10-25)
  • MU.2 (2024-10-25)
  • MU.2.1 (2024-10-25)
  • KP.3.7 (2024-10-25)
  • LZ.2.1.2 (2024-10-27)
  • LZ.2.1.1 (2024-10-27)
  • KR.1.4 (2024-10-27)
  • KP.2.3.12 (2024-10-27)
  • NM.1 (2024-10-27)
  • LP.8 (2024-10-27)
  • LP.7.1.2 (2024-10-27)
  • KP.4.2.5 (2024-10-27)
  • KP.4.2.4 (2024-10-27)
  • LF.7.1.2 (2024-10-27)
  • MC.19 (2024-11-01)
  • KP.2.6.1 (2024-11-01)
  • MC.20 (2024-11-01)
  • MC.10.2 (2024-11-01)
  • KP.3.2.7 (2024-11-01)
  • KP.3.2.8 (2024-11-01)
  • KP.3.2.9 (2024-11-01)
  • XEC.3 (2024-11-01)
  • XEC.4 (2024-11-01)
  • XEC.5 (2024-11-01)
  • XEC.6 (2024-11-01)
  • XEC.7 (2024-11-01)
  • MJ.2 (2024-11-05)
  • MJ.2.1 (2024-11-05)
  • MJ.2.1.1 (2024-11-05)
  • MJ.1.1 (2024-11-05)
  • LF.10 (2024-11-05)
  • LP.8.1 (2024-11-08)
  • LP.8.2 (2024-11-08)
  • LF.7.1.3 (2024-11-08)
  • NL.2 (2024-11-08)
  • NL.3 (2024-11-08)
  • NL.4 (2024-11-08)
  • NL.5 (2024-11-08)
  • NL.6 (2024-11-08)
  • NL.7 (2024-11-08)
  • NM.2 (2024-11-12)
  • LP.9 (2024-11-12)
  • LP.9.1 (2024-11-12)
  • NN.1 (2024-11-12)
  • NN.1.1 (2024-11-12)
  • NN.2 (2024-11-12)
  • LP.1.2.1 (2024-11-12)
  • NC.1.1 (2024-11-12)
  • NC.1.2 (2024-11-12)
  • LB.1.10 (2024-11-12)
  • NP.1 (2024-11-12)
  • NP.2 (2024-11-12)
  • XEP (2024-11-12)
  • MC.13.2 (2024-11-12)
  • MC.21 (2024-11-12)
  • MC.21.1 (2024-11-12)
  • MC.22 (2024-11-12)
  • XDY.1 (2024-11-12)
  • LP.10 (2024-11-12)
  • LP.10.1 (2024-11-12)
  • NQ.1 (2024-11-12)
  • NH.4 (2024-11-12)
  • MU.3 (2024-11-12)
  • KP.2.3.13 (2024-11-13)
  • MG.2 (2024-11-13)
  • MG.3 (2024-11-13)
  • MG.4 (2024-11-14)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Add newly designated Nextstrain clades 24H (LF.7) and 24I (MV.1)
  • Add all 128 Pango lineages newly designated between 2024-10-19 and 2024-11-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • LF.7.1 (2024-10-19)
  • LF.7.1.1 (2024-10-19)
  • LF.7.2 (2024-10-19)
  • LF.7.2.1 (2024-10-19)
  • LF.7.3 (2024-10-19)
  • LF.7.4 (2024-10-19)
  • JN.1.49.3 (2024-10-20)
  • MV.2 (2024-10-20)
  • MB.1.1.2 (2024-10-20)
  • MB.1.1.3 (2024-10-20)
  • NA.1 (2024-10-20)
  • NA.1.1 (2024-10-20)
  • XDV.1.5.1 (2024-10-20)
  • NB.1 (2024-10-20)
  • KS.1.1.1 (2024-10-20)
  • KS.1.1.2 (2024-10-20)
  • LF.3.1.2 (2024-10-20)
  • XEL (2024-10-20)
  • NC.1 (2024-10-20)
  • ND.1 (2024-10-20)
  • ND.1.1 (2024-10-20)
  • ND.2 (2024-10-20)
  • ND.3 (2024-10-20)
  • MC.10.1 (2024-10-20)
  • KP.2.2.1 (2024-10-20)
  • KP.2.25.1 (2024-10-20)
  • KP.2.25.2 (2024-10-20)
  • KP.2.25.3 (2024-10-20)
  • MD.3.1.1 (2024-10-20)
  • MD.3.1.2 (2024-10-20)
  • MD.3.1.3 (2024-10-20)
  • MD.3.1.4 (2024-10-20)
  • MD.1.2 (2024-10-20)
  • MD.1.1.1 (2024-10-20)
  • KP.3.2.6 (2024-10-21)
  • MC.1.1 (2024-10-21)
  • MC.18 (2024-10-21)
  • KP.2.27 (2024-10-22)
  • KP.2.3.8 (2024-10-22)
  • KP.2.2.2 (2024-10-22)
  • XEM (2024-10-22)
  • KP.3.1.9 (2024-10-22)
  • KP.1.1.6 (2024-10-23)
  • NE.1 (2024-10-23)
  • XEN (2024-10-23)
  • NF.1 (2024-10-24)
  • KP.2.3.9 (2024-10-24)
  • NG.1 (2024-10-24)
  • NH.1 (2024-10-24)
  • NH.2 (2024-10-24)
  • NH.3 (2024-10-24)
  • JN.1.11.2 (2024-10-25)
  • NJ.1 (2024-10-25)
  • KP.2.3.10 (2024-10-25)
  • NK.1 (2024-10-25)
  • LP.5 (2024-10-25)
  • LP.6 (2024-10-25)
  • LP.7 (2024-10-25)
  • KP.2.3.11 (2024-10-25)
  • LD.2 (2024-10-25)
  • KP.3.1.10 (2024-10-25)
  • NL.1 (2024-10-25)
  • MU.2 (2024-10-25)
  • MU.2.1 (2024-10-25)
  • KP.3.7 (2024-10-25)
  • LZ.2.1.2 (2024-10-27)
  • LZ.2.1.1 (2024-10-27)
  • KR.1.4 (2024-10-27)
  • KP.2.3.12 (2024-10-27)
  • NM.1 (2024-10-27)
  • LP.8 (2024-10-27)
  • LP.7.1.2 (2024-10-27)
  • KP.4.2.5 (2024-10-27)
  • KP.4.2.4 (2024-10-27)
  • LF.7.1.2 (2024-10-27)
  • MC.19 (2024-11-01)
  • KP.2.6.1 (2024-11-01)
  • MC.20 (2024-11-01)
  • MC.10.2 (2024-11-01)
  • KP.3.2.7 (2024-11-01)
  • KP.3.2.8 (2024-11-01)
  • KP.3.2.9 (2024-11-01)
  • XEC.3 (2024-11-01)
  • XEC.4 (2024-11-01)
  • XEC.5 (2024-11-01)
  • XEC.6 (2024-11-01)
  • XEC.7 (2024-11-01)
  • MJ.2 (2024-11-05)
  • MJ.2.1 (2024-11-05)
  • MJ.2.1.1 (2024-11-05)
  • MJ.1.1 (2024-11-05)
  • LF.10 (2024-11-05)
  • LP.8.1 (2024-11-08)
  • LP.8.2 (2024-11-08)
  • LF.7.1.3 (2024-11-08)
  • NL.2 (2024-11-08)
  • NL.3 (2024-11-08)
  • NL.4 (2024-11-08)
  • NL.5 (2024-11-08)
  • NL.6 (2024-11-08)
  • NL.7 (2024-11-08)
  • NM.2 (2024-11-12)
  • LP.9 (2024-11-12)
  • LP.9.1 (2024-11-12)
  • NN.1 (2024-11-12)
  • NN.1.1 (2024-11-12)
  • NN.2 (2024-11-12)
  • LP.1.2.1 (2024-11-12)
  • NC.1.1 (2024-11-12)
  • NC.1.2 (2024-11-12)
  • LB.1.10 (2024-11-12)
  • NP.1 (2024-11-12)
  • NP.2 (2024-11-12)
  • XEP (2024-11-12)
  • MC.13.2 (2024-11-12)
  • MC.21 (2024-11-12)
  • MC.21.1 (2024-11-12)
  • MC.22 (2024-11-12)
  • XDY.1 (2024-11-12)
  • LP.10 (2024-11-12)
  • LP.10.1 (2024-11-12)
  • NQ.1 (2024-11-12)
  • NH.4 (2024-11-12)
  • MU.3 (2024-11-12)
  • KP.2.3.13 (2024-11-13)
  • MG.2 (2024-11-13)
  • MG.3 (2024-11-13)
  • MG.4 (2024-11-14)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Add newly designated Nextstrain clades 24H (LF.7) and 24I (MV.1)
  • Add all 128 Pango lineages newly designated between 2024-10-19 and 2024-11-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • LF.7.1 (2024-10-19)
  • LF.7.1.1 (2024-10-19)
  • LF.7.2 (2024-10-19)
  • LF.7.2.1 (2024-10-19)
  • LF.7.3 (2024-10-19)
  • LF.7.4 (2024-10-19)
  • JN.1.49.3 (2024-10-20)
  • MV.2 (2024-10-20)
  • MB.1.1.2 (2024-10-20)
  • MB.1.1.3 (2024-10-20)
  • NA.1 (2024-10-20)
  • NA.1.1 (2024-10-20)
  • XDV.1.5.1 (2024-10-20)
  • NB.1 (2024-10-20)
  • KS.1.1.1 (2024-10-20)
  • KS.1.1.2 (2024-10-20)
  • LF.3.1.2 (2024-10-20)
  • XEL (2024-10-20)
  • NC.1 (2024-10-20)
  • ND.1 (2024-10-20)
  • ND.1.1 (2024-10-20)
  • ND.2 (2024-10-20)
  • ND.3 (2024-10-20)
  • MC.10.1 (2024-10-20)
  • KP.2.2.1 (2024-10-20)
  • KP.2.25.1 (2024-10-20)
  • KP.2.25.2 (2024-10-20)
  • KP.2.25.3 (2024-10-20)
  • MD.3.1.1 (2024-10-20)
  • MD.3.1.2 (2024-10-20)
  • MD.3.1.3 (2024-10-20)
  • MD.3.1.4 (2024-10-20)
  • MD.1.2 (2024-10-20)
  • MD.1.1.1 (2024-10-20)
  • KP.3.2.6 (2024-10-21)
  • MC.1.1 (2024-10-21)
  • MC.18 (2024-10-21)
  • KP.2.27 (2024-10-22)
  • KP.2.3.8 (2024-10-22)
  • KP.2.2.2 (2024-10-22)
  • XEM (2024-10-22)
  • KP.3.1.9 (2024-10-22)
  • KP.1.1.6 (2024-10-23)
  • NE.1 (2024-10-23)
  • XEN (2024-10-23)
  • NF.1 (2024-10-24)
  • KP.2.3.9 (2024-10-24)
  • NG.1 (2024-10-24)
  • NH.1 (2024-10-24)
  • NH.2 (2024-10-24)
  • NH.3 (2024-10-24)
  • JN.1.11.2 (2024-10-25)
  • NJ.1 (2024-10-25)
  • KP.2.3.10 (2024-10-25)
  • NK.1 (2024-10-25)
  • LP.5 (2024-10-25)
  • LP.6 (2024-10-25)
  • LP.7 (2024-10-25)
  • KP.2.3.11 (2024-10-25)
  • LD.2 (2024-10-25)
  • KP.3.1.10 (2024-10-25)
  • NL.1 (2024-10-25)
  • MU.2 (2024-10-25)
  • MU.2.1 (2024-10-25)
  • KP.3.7 (2024-10-25)
  • LZ.2.1.2 (2024-10-27)
  • LZ.2.1.1 (2024-10-27)
  • KR.1.4 (2024-10-27)
  • KP.2.3.12 (2024-10-27)
  • NM.1 (2024-10-27)
  • LP.8 (2024-10-27)
  • LP.7.1.2 (2024-10-27)
  • KP.4.2.5 (2024-10-27)
  • KP.4.2.4 (2024-10-27)
  • LF.7.1.2 (2024-10-27)
  • MC.19 (2024-11-01)
  • KP.2.6.1 (2024-11-01)
  • MC.20 (2024-11-01)
  • MC.10.2 (2024-11-01)
  • KP.3.2.7 (2024-11-01)
  • KP.3.2.8 (2024-11-01)
  • KP.3.2.9 (2024-11-01)
  • XEC.3 (2024-11-01)
  • XEC.4 (2024-11-01)
  • XEC.5 (2024-11-01)
  • XEC.6 (2024-11-01)
  • XEC.7 (2024-11-01)
  • MJ.2 (2024-11-05)
  • MJ.2.1 (2024-11-05)
  • MJ.2.1.1 (2024-11-05)
  • MJ.1.1 (2024-11-05)
  • LF.10 (2024-11-05)
  • LP.8.1 (2024-11-08)
  • LP.8.2 (2024-11-08)
  • LF.7.1.3 (2024-11-08)
  • NL.2 (2024-11-08)
  • NL.3 (2024-11-08)
  • NL.4 (2024-11-08)
  • NL.5 (2024-11-08)
  • NL.6 (2024-11-08)
  • NL.7 (2024-11-08)
  • NM.2 (2024-11-12)
  • LP.9 (2024-11-12)
  • LP.9.1 (2024-11-12)
  • NN.1 (2024-11-12)
  • NN.1.1 (2024-11-12)
  • NN.2 (2024-11-12)
  • LP.1.2.1 (2024-11-12)
  • NC.1.1 (2024-11-12)
  • NC.1.2 (2024-11-12)
  • LB.1.10 (2024-11-12)
  • NP.1 (2024-11-12)
  • NP.2 (2024-11-12)
  • XEP (2024-11-12)
  • MC.13.2 (2024-11-12)
  • MC.21 (2024-11-12)
  • MC.21.1 (2024-11-12)
  • MC.22 (2024-11-12)
  • XDY.1 (2024-11-12)
  • LP.10 (2024-11-12)
  • LP.10.1 (2024-11-12)
  • NQ.1 (2024-11-12)
  • NH.4 (2024-11-12)
  • MU.3 (2024-11-12)
  • KP.2.3.13 (2024-11-13)
  • MG.2 (2024-11-13)
  • MG.3 (2024-11-13)
  • MG.4 (2024-11-14)

SARS-Co...

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Assets 7
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2024-11-05--09-19-52Z

05 Nov 09:20
@github-actions github-actions
2024-11-05--09-19-52Z
4a5dc35
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2024-11-05--09-19-52Z

This release contains changes for datasets:

  • Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)
  • Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)
  • Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)
  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)
  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)
  • Influenza A H3N2 NA (nextstrain/flu/h3n2/na/EPI1857215)
  • Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)
  • Influenza B Victoria NA (nextstrain/flu/vic/na/CY073894)
  • Yellow fever virus (YFV) prM-E region (nextstrain/yellow-fever/prM-E)
  • Orthomarburgvirus marburgense (community/genspectrum/marburg/HK1980/all-lineages)

Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/CY121680)

  • update reference trees
  • include subclade proposals

Influenza A H1N1pdm HA (nextstrain/flu/h1n1pdm/ha/MW626062)

  • update reference trees
  • include subclade proposals

Influenza A H1N1pdm NA (nextstrain/flu/h1n1pdm/na/MW626056)

  • update reference trees

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/CY163680)

  • update reference trees
  • include subclade proposals

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)

  • update reference trees
  • include subclade proposals

Influenza A H3N2 NA (nextstrain/flu/h3n2/na/EPI1857215)

  • update reference trees

Influenza B Victoria HA (nextstrain/flu/vic/ha/KX058884)

  • update reference trees

Influenza B Victoria NA (nextstrain/flu/vic/na/CY073894)

  • update reference trees

Yellow fever virus (YFV) prM-E region (nextstrain/yellow-fever/prM-E)

Initial release of yellow fever virus (prM-E region only) dataset.

Orthomarburgvirus marburgense (community/genspectrum/marburg/HK1980/all-lineages)

First release of Marburg virus dataset.

Assets 12
Loading

2024-10-17--16-48-48Z

17 Oct 16:49
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2024-10-17--16-48-48Z
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2024-10-17--16-48-48Z

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)
  • DENV-1 (community/v-gen-lab/dengue/denv1)
  • DENV-2 (community/v-gen-lab/dengue/denv2)
  • DENV-3 (community/v-gen-lab/dengue/denv3)
  • DENV-4 (community/v-gen-lab/dengue/denv4)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Add newly designated Nextstrain clades 24F (XEC) and 24G (KP.2.3)
  • Add all 4 Pango lineages designated between 2024-09-26 and 2024-10-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEH (2024-09-28)
  • XEJ (2024-09-28)
  • XEC.2 (2024-09-28)
  • XEK (2024-09-28)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Add newly designated Nextstrain clades 24F (XEC) and 24G (KP.2.3)
  • Add all 4 Pango lineages designated between 2024-09-26 and 2024-10-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEH (2024-09-28)
  • XEJ (2024-09-28)
  • XEC.2 (2024-09-28)
  • XEK (2024-09-28)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Add newly designated Nextstrain clades 24F (XEC) and 24G (KP.2.3)
  • Add all 4 Pango lineages designated between 2024-09-26 and 2024-10-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEH (2024-09-28)
  • XEJ (2024-09-28)
  • XEC.2 (2024-09-28)
  • XEK (2024-09-28)

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

  • Add newly designated Nextstrain clades 24F (XEC) and 24G (KP.2.3)
  • Add all 4 Pango lineages designated between 2024-09-26 and 2024-10-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEH (2024-09-28)
  • XEJ (2024-09-28)
  • XEC.2 (2024-09-28)
  • XEK (2024-09-28)

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

  • Add newly designated Nextstrain clades 24F (XEC) and 24G (KP.2.3)
  • Add all 4 Pango lineages designated between 2024-09-26 and 2024-10-14. Unfold below to see a list of all newly included lineages with their designation dates:
Newly included lineages, with designation date in parentheses
  • XEH (2024-09-28)
  • XEJ (2024-09-28)
  • XEC.2 (2024-09-28)
  • XEK (2024-09-28)

DENV-1 (community/v-gen-lab/dengue/denv1)

  • Update of the reference tree to avoid subclassification errors detected in other tools; We have added more representative sequences to some of the lineages.

DENV-2 (community/v-gen-lab/dengue/denv2)

  • Update of the reference tree to avoid subclassification errors detected in other tools; We have added more representative sequences to some of the lineages.

DENV-3 (community/v-gen-lab/dengue/denv3)

  • Update of the reference tree to avoid subclassification errors detected in other tools; We have added more representative sequences to some of the lineages.

DENV-4 (community/v-gen-lab/dengue/denv4)

  • Update of the reference tree to avoid subclassification errors detected in other tools; We have added more representative sequences to some of the lineages.
Assets 11
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2024-09-25--21-50-30Z

25 Sep 21:50
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2024-09-25--21-50-30Z
0812396
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2024-09-25--21-50-30Z

This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
  • All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • XEC (2024-08-07)
  • KP.2.3.5 (2024-08-07)
  • KP.2.3.6 (2024-08-07)
  • LP.4 (2024-08-07)
  • LP.1.2 (2024-08-07)
  • LB.1.2.2 (2024-08-07)
  • LB.1.2.3 (2024-08-07)
  • KP.2.18 (2024-08-07)
  • KP.2.14.1 (2024-08-07)
  • MC.2 (2024-08-08)
  • MC.2.1 (2024-08-08)
  • KR.1.3 (2024-08-08)
  • MP.1 (2024-08-08)
  • MP.1.1 (2024-08-08)
  • JQ.2.1.2 (2024-08-08)
  • MC.4 (2024-08-08)
  • MC.3 (2024-08-08)
  • LB.1.3.3 (2024-08-08)
  • KP.2.15.1 (2024-08-08)
  • KP.3.1.7 (2024-08-08)
  • MQ.1 (2024-08-08)
  • MQ.2 (2024-08-08)
  • KP.3.3.4 (2024-08-08)
  • MR.1 (2024-08-08)
  • MK.3 (2024-08-08)
  • XED (2024-08-08)
  • LZ.2 (2024-08-12)
  • XEC.1 (2024-08-14)
  • MS.1 (2024-08-15)
  • KU.2.1 (2024-08-15)
  • KU.2.2 (2024-08-15)
  • MA.1.1 (2024-08-15)
  • MA.1.1.1 (2024-08-15)
  • JN.1.18.8 (2024-08-15)
  • JN.1.59.1 (2024-08-15)
  • JN.1.16.4 (2024-08-15)
  • LU.2.1 (2024-08-15)
  • LU.2.1.1 (2024-08-15)
  • MT.1 (2024-08-15)
  • KP.2.19 (2024-08-15)
  • LF.6 (2024-08-15)
  • LR.3 (2024-08-15)
  • XDV.1.1 (2024-08-15)
  • XDV.1.2 (2024-08-15)
  • XDV.1.2.1 (2024-08-15)
  • XDV.1.3 (2024-08-15)
  • XDV.1.4 (2024-08-15)
  • XDV.1.5 (2024-08-15)
  • XDV.1.6 (2024-08-15)
  • LF.7 (2024-08-15)
  • MU.1 (2024-08-15)
  • JN.1.4.9 (2024-08-15)
  • JN.1.38.1 (2024-08-15)
  • MC.5 (2024-08-15)
  • MC.6 (2024-08-15)
  • MC.7 (2024-08-15)
  • MC.8 (2024-08-15)
  • MC.8.1 (2024-08-15)
  • MC.9 (2024-08-15)
  • MC.10 (2024-08-15)
  • MC.11 (2024-08-15)
  • MC.11.1 (2024-08-15)
  • MC.12 (2024-08-15)
  • MC.13 (2024-08-15)
  • MC.13.1 (2024-08-15)
  • MC.14 (2024-08-15)
  • MC.15 (2024-08-15)
  • MC.16 (2024-08-15)
  • MB.1.1.1 (2024-08-15)
  • MV.1 (2024-08-15)
  • KP.2.20 (2024-08-15)
  • KP.2.20.1 (2024-08-15)
  • JN.1.67 (2024-08-15)
  • JN.1.67.1 (2024-08-15)
  • XEF (2024-08-15)
  • KP.2.22 (2024-08-16)
  • KP.2.24 (2024-08-16)
  • KP.2.25 (2024-08-16)
  • KP.2.26 (2024-08-16)
  • KR.4.1 (2024-08-16)
  • KP.6 (2024-08-16)
  • XEG (2024-08-16)
  • KP.2.3.7 (2024-08-16)
  • MW.1 (2024-08-16)
  • KP.2.23 (2024-08-16)
  • JN.1.68 (2024-08-16)
  • LF.8 (2024-08-16)
  • LF.8.1 (2024-08-16)
  • LF.8.1.1 (2024-08-16)
  • XEE (2024-08-16)
  • MC.17 (2024-08-16)
  • JN.1.16.5 (2024-08-16)
  • LW.1.1 (2024-08-16)
  • LW.1.2 (2024-08-16)
  • KP.3.6 (2024-08-16)
  • LB.1.9 (2024-08-16)
  • KP.3.1.8 (2024-08-16)
  • MY.1 (2024-08-16)
  • XDV.1.7 (2024-08-17)
  • XDV.1.8 (2024-08-17)
  • XDV.1.9 (2024-08-17)
  • XDR.1.1 (2024-08-17)
  • XDR.1.2 (2024-08-17)
  • XDV.1.10 (2024-08-17)
  • XDV.1.11 (2024-08-17)
  • LU.2.2 (2024-08-20)
  • LB.1.4.3 (2024-08-24)
  • LF.9 (2024-08-27)
  • LF.9.1 (2024-08-27)
  • XDV.1.7.1 (2024-09-05)
  • XDV.1.9.1 (2024-09-05)
  • LZ.2.1 (2024-09-05)
  • MZ.1 (2024-09-05)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
  • All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • XEC (2024-08-07)
  • KP.2.3.5 (2024-08-07)
  • KP.2.3.6 (2024-08-07)
  • LP.4 (2024-08-07)
  • LP.1.2 (2024-08-07)
  • LB.1.2.2 (2024-08-07)
  • LB.1.2.3 (2024-08-07)
  • KP.2.18 (2024-08-07)
  • KP.2.14.1 (2024-08-07)
  • MC.2 (2024-08-08)
  • MC.2.1 (2024-08-08)
  • KR.1.3 (2024-08-08)
  • MP.1 (2024-08-08)
  • MP.1.1 (2024-08-08)
  • JQ.2.1.2 (2024-08-08)
  • MC.4 (2024-08-08)
  • MC.3 (2024-08-08)
  • LB.1.3.3 (2024-08-08)
  • KP.2.15.1 (2024-08-08)
  • KP.3.1.7 (2024-08-08)
  • MQ.1 (2024-08-08)
  • MQ.2 (2024-08-08)
  • KP.3.3.4 (2024-08-08)
  • MR.1 (2024-08-08)
  • MK.3 (2024-08-08)
  • XED (2024-08-08)
  • LZ.2 (2024-08-12)
  • XEC.1 (2024-08-14)
  • MS.1 (2024-08-15)
  • KU.2.1 (2024-08-15)
  • KU.2.2 (2024-08-15)
  • MA.1.1 (2024-08-15)
  • MA.1.1.1 (2024-08-15)
  • JN.1.18.8 (2024-08-15)
  • JN.1.59.1 (2024-08-15)
  • JN.1.16.4 (2024-08-15)
  • LU.2.1 (2024-08-15)
  • LU.2.1.1 (2024-08-15)
  • MT.1 (2024-08-15)
  • KP.2.19 (2024-08-15)
  • LF.6 (2024-08-15)
  • LR.3 (2024-08-15)
  • XDV.1.1 (2024-08-15)
  • XDV.1.2 (2024-08-15)
  • XDV.1.2.1 (2024-08-15)
  • XDV.1.3 (2024-08-15)
  • XDV.1.4 (2024-08-15)
  • XDV.1.5 (2024-08-15)
  • XDV.1.6 (2024-08-15)
  • LF.7 (2024-08-15)
  • MU.1 (2024-08-15)
  • JN.1.4.9 (2024-08-15)
  • JN.1.38.1 (2024-08-15)
  • MC.5 (2024-08-15)
  • MC.6 (2024-08-15)
  • MC.7 (2024-08-15)
  • MC.8 (2024-08-15)
  • MC.8.1 (2024-08-15)
  • MC.9 (2024-08-15)
  • MC.10 (2024-08-15)
  • MC.11 (2024-08-15)
  • MC.11.1 (2024-08-15)
  • MC.12 (2024-08-15)
  • MC.13 (2024-08-15)
  • MC.13.1 (2024-08-15)
  • MC.14 (2024-08-15)
  • MC.15 (2024-08-15)
  • MC.16 (2024-08-15)
  • MB.1.1.1 (2024-08-15)
  • MV.1 (2024-08-15)
  • KP.2.20 (2024-08-15)
  • KP.2.20.1 (2024-08-15)
  • JN.1.67 (2024-08-15)
  • JN.1.67.1 (2024-08-15)
  • XEF (2024-08-15)
  • KP.2.22 (2024-08-16)
  • KP.2.24 (2024-08-16)
  • KP.2.25 (2024-08-16)
  • KP.2.26 (2024-08-16)
  • KR.4.1 (2024-08-16)
  • KP.6 (2024-08-16)
  • XEG (2024-08-16)
  • KP.2.3.7 (2024-08-16)
  • MW.1 (2024-08-16)
  • KP.2.23 (2024-08-16)
  • JN.1.68 (2024-08-16)
  • LF.8 (2024-08-16)
  • LF.8.1 (2024-08-16)
  • LF.8.1.1 (2024-08-16)
  • XEE (2024-08-16)
  • MC.17 (2024-08-16)
  • JN.1.16.5 (2024-08-16)
  • LW.1.1 (2024-08-16)
  • LW.1.2 (2024-08-16)
  • KP.3.6 (2024-08-16)
  • LB.1.9 (2024-08-16)
  • KP.3.1.8 (2024-08-16)
  • MY.1 (2024-08-16)
  • XDV.1.7 (2024-08-17)
  • XDV.1.8 (2024-08-17)
  • XDV.1.9 (2024-08-17)
  • XDR.1.1 (2024-08-17)
  • XDR.1.2 (2024-08-17)
  • XDV.1.10 (2024-08-17)
  • XDV.1.11 (2024-08-17)
  • LU.2.2 (2024-08-20)
  • LB.1.4.3 (2024-08-24)
  • LF.9 (2024-08-27)
  • LF.9.1 (2024-08-27)
  • XDV.1.7.1 (2024-09-05)
  • XDV.1.9.1 (2024-09-05)
  • LZ.2.1 (2024-09-05)
  • MZ.1 (2024-09-05)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
  • All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • XEC (2024-08-07)
  • KP.2.3.5 (2024-08-07)
  • KP.2.3.6 (2024-08-07)
  • LP.4 (2024-08-07)
  • LP.1.2 (2024-08-07)
  • LB.1.2.2 (2024-08-07)
  • LB.1.2.3 (2024-08-07)
  • KP.2.18 (2024-08-07)
  • KP.2.14.1 (2024-08-07)
  • MC.2 (2024-08-08)
  • MC.2.1 (2024-08-08)
  • KR.1.3 (2024-08-08)
  • MP.1 (2024-08-08)
  • MP.1.1 (2024-08-08)
  • JQ.2.1.2 (2024-08-08)
  • MC.4 (2024-08-08)
  • MC.3 (2024-08-08)
  • LB.1.3.3 (2024-08-08)
  • KP.2.15.1 (2024-08-08)
  • KP.3.1.7 (2024-08-08)
  • MQ.1 (2024-08-08)
  • MQ.2 (2024-08-08)
  • KP.3.3.4 (2024-08-08)
  • MR.1 (2024-08-08)
  • MK.3 (2024-08-08)
  • XED (2024-08-08)
  • LZ.2 (2024-08-12)
  • XEC.1 (2024-08-14)
  • MS.1 (2024-08-15)
  • KU.2.1 (2024-08-15)
  • KU.2.2 (2024-08-15)
  • MA.1.1 (2024-08-15)
  • MA.1.1.1 (2024-08-15)
  • JN.1.18.8 (2024-08-15)
  • JN.1.59.1 (2024-08-15)
  • JN.1.16.4 (2024-08-15)
  • LU.2.1 (2024-08-15)
  • LU.2.1.1 (2024-08-15)
  • MT.1 (2024-08-15)
  • KP.2.19 (2024-08-15)
  • LF.6 (2024-08-15)
  • LR.3 (2024-08-15)
  • XDV.1.1 (2024-08-15)
  • XDV.1.2 (2024-08-15)
  • XDV.1.2.1 (2024-08-15)
  • XDV.1.3 (2024-08-15)
  • XDV.1.4 (2024-08-15)
  • XDV.1.5 (2024-08-15)
  • XDV.1.6 (2024-08-15)
  • LF.7 (2024-08-15)
  • MU.1 (2024-08-15)
  • JN.1.4.9 (2024-08-15)
  • JN.1.38.1 (2024-08-15)
  • MC.5 (2024-08-15)
  • MC.6 (2024-08-15)
  • MC.7 (2024-08-15)
  • MC.8 (2024-08-15)
  • MC.8.1 (2024-08-15)
  • MC.9 (2024-08-15)
  • MC.10 (2024-08-15)
  • MC.11 (2024-08-15)
  • MC.11.1 (2024-08-15)
  • MC.12 (2024-08-15)
  • MC.13 (2024-08-15)
  • MC.13.1 (2024-08-15)
  • MC.14 (2024-08-15)
  • MC.15 (2024-08-15)
  • MC.16 (2024-08-15)
  • MB.1.1.1 (2024-08-15)
  • MV.1 (2024-08-15)
  • KP.2.20 (2024-08-15)
  • KP.2.20.1 (2024-08-15)
  • JN.1.67 (2024-08-15)
  • JN.1.67.1 (2024-08-15)
  • XEF (2024-08-15)
  • KP.2.22 (2024-08-16)
  • KP.2.24 (2024-08-16)
  • KP.2.25 (2024-08-16)
  • KP.2.26 (2024-08-16)
  • KR.4.1 (2024-08-16)
  • KP.6 (2024-08-16)
  • XEG (2024-08-16)
  • KP.2.3.7 (2024-08-16)
  • MW.1 (2024-08-16)
  • KP.2.23 (2024-08-16)
  • JN.1.68 (2024-08-16)
  • LF.8 (2024-08-16)
  • LF.8.1 (2024-08-16)
  • LF.8.1.1 (2024-08-16)
  • XEE (2024-08-16)
  • MC.17 (2024-08-16)
  • JN.1.16.5 (2024-08-16)
  • LW.1.1 (2024-08-16)
  • LW.1.2 (2024-08-16)
  • KP.3.6 (2024-08-16)
  • LB.1.9 (2024-08-16)
  • KP.3.1.8 (2024-08-16)
  • MY.1 (2024-08-16)
  • XDV.1.7 (2024-08-17)
  • XDV.1.8 (2024-08-17)
  • XDV.1.9 (2024-08-17)
  • XDR.1.1 (2024-08-17)
  • XDR.1.2 (2024-08-17)
  • XDV.1.10 (2024-08-17)
  • XDV.1.11 (2024-08-17)
  • LU.2.2 (2024-08-20)
  • LB.1.4.3 (2024-08-24)
  • LF.9 (2024-08-27)
  • LF.9.1 (2024-08-27)
  • XDV.1.7.1 (2024-09-05)
  • XDV.1.9.1 (2024-09-05)
  • LZ.2.1 (2024-09-05)
  • MZ.1 (2024-09-05)

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

  • Include newly designated Nextstrain clades 24D (XDV.1) and 24E (KP.3.1.1)
  • All 113 Pango lineages designated between 2024-07-15 and 2024-09-25 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • XEC (2024-08-07)
  • KP.2.3.5 (2024-08-07)
  • KP.2.3.6 (2024-08-07)
  • LP.4 (2024-08-07)
  • LP.1.2 (2024-08-07)
  • LB.1.2.2 (2024-08-07)
  • LB.1.2.3 (2024-08-07)
  • KP.2.18 (2024-08-07)
  • KP.2.14.1 (2024-08-07)
  • MC.2 (2024-08-08)
  • MC.2.1 (2024-08-08)
  • KR.1.3 (2024-08-08)
  • MP.1 (2024-08-08)
  • MP.1.1 (2024-08-08)
  • JQ.2.1.2 (2024-08-08)
  • MC.4 (2024-08-08)
  • MC.3 (2024-08-08)
  • LB.1.3.3 (2024-08-08)
  • KP.2.15.1 (2024-08-08)
  • KP.3.1.7 (2024-08-08)
  • MQ.1 (2024-08-08)
  • MQ.2 (2024-08-08)
  • KP.3.3.4 ...
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Assets 7
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2024-08-31--20-44-06Z

31 Aug 20:44
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This release contains changes for datasets:

  • DENV-1 (community/v-gen-lab/dengue/denv1)
  • DENV-2 (community/v-gen-lab/dengue/denv2)
  • DENV-3 (community/v-gen-lab/dengue/denv3)
  • DENV-4 (community/v-gen-lab/dengue/denv4)

DENV-1 (community/v-gen-lab/dengue/denv1)

Initial release of a DENV-1 dataset for Lineage classification!

Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

DENV-2 (community/v-gen-lab/dengue/denv2)

Initial release of a DENV-2 dataset for Lineage classification!

Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

DENV-3 (community/v-gen-lab/dengue/denv3)

Initial release of a DENV-3 dataset for Lineage classification!

Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

DENV-4 (community/v-gen-lab/dengue/denv4)

Initial release of a DENV-4 dataset for Lineage classification!

Read more about Nextclade datasets in the documentation: https://docs.nextstrain.org/projects/nextclade/en/stable/user/datasets.html

Assets 6
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2024-08-27--21-28-04Z

27 Aug 21:28
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This release contains changes for datasets:

  • Mpox virus (All clades) (nextstrain/mpox/all-clades)

Mpox virus (All clades) (nextstrain/mpox/all-clades)

  • Clade Ia and clade Ib are now distinguished
  • Sequences shared via Genbank since 2024 have been added
Assets 3
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2024-08-08--05-08-21Z

08 Aug 05:08
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This release contains changes for datasets:

  • Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)

Influenza A H3N2 HA (nextstrain/flu/h3n2/ha/EPI1857216)

Fix numbering of RBD sites it the pathogen.json. The relevant positions were indexed 1-based, when they should have been indexed 0-based.

Assets 3
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2024-08-01--22-31-31Z

01 Aug 22:31
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This release contains changes for datasets:

  • RSV-A (nextstrain/rsv/a/EPI_ISL_412866)
  • RSV-B (nextstrain/rsv/b/EPI_ISL_1653999)
  • Mpox virus (Clade I) (nextstrain/mpox/clade-i)

RSV-A (nextstrain/rsv/a/EPI_ISL_412866)

  • add subclades A.D.1.4-8
  • add subclades A.D.3.2-6, add representatives to A.D.3.1
  • add subclade A.D.5.4, adjust definition of A.D.5.3 to make it a clear sibling

RSV-B (nextstrain/rsv/b/EPI_ISL_1653999)

  • update of reference tree with additional data. No new clades.

Mpox virus (Clade I) (nextstrain/mpox/clade-i)

Initial release of this dataset.

Assets 5
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2024-07-17--12-57-03Z

17 Jul 12:57
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This release contains changes for datasets:

  • SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)
  • SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)
  • SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)
  • SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)
  • SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

SARS-CoV-2 (nextstrain/sars-cov-2/wuhan-hu-1/orfs)

  • Include newly designated Nextstrain clade 24C (KP.3)
  • All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • BA.2.86.7 (2024-06-13)
  • XDZ (2024-06-14)
  • JN.1.1.10 (2024-06-14)
  • JN.1.63 (2024-06-14)
  • JN.1.63.1 (2024-06-14)
  • XEA (2024-06-14)
  • XEB (2024-06-14)
  • XDP.2 (2024-06-14)
  • XDP.3 (2024-06-14)
  • LV.1 (2024-06-14)
  • LV.2 (2024-06-14)
  • LE.1.3 (2024-06-14)
  • LE.1.3.1 (2024-06-14)
  • JN.1.58.3 (2024-06-14)
  • KP.4.1.1 (2024-06-17)
  • KP.4.1.2 (2024-06-17)
  • KP.4.1.3 (2024-06-17)
  • LW.1 (2024-06-17)
  • LP.3 (2024-06-17)
  • KP.3.1.5 (2024-06-17)
  • KP.1.1.5 (2024-06-17)
  • XDD.3 (2024-06-29)
  • LF.3.1.1 (2024-06-29)
  • LB.1.3.1 (2024-06-29)
  • KP.2.3.4 (2024-06-29)
  • JN.1.18.6 (2024-06-29)
  • LY.2 (2024-06-29)
  • LY.1 (2024-06-29)
  • JN.1.18.7 (2024-06-29)
  • LZ.1 (2024-06-29)
  • LZ.1.1 (2024-06-29)
  • MA.1 (2024-06-29)
  • MB.1 (2024-06-29)
  • MB.1.1 (2024-06-29)
  • LP.1.1 (2024-06-29)
  • LF.4 (2024-06-29)
  • LF.4.1 (2024-06-29)
  • KP.3.3.1 (2024-06-29)
  • MC.1 (2024-06-29)
  • LU.2 (2024-07-01)
  • JN.1.64 (2024-07-01)
  • JN.1.64.1 (2024-07-01)
  • MD.1 (2024-07-01)
  • MD.1.1 (2024-07-01)
  • MD.2 (2024-07-01)
  • MD.3 (2024-07-01)
  • MD.3.1 (2024-07-01)
  • LK.2 (2024-07-03)
  • LK.2.1 (2024-07-03)
  • JN.1.7.8 (2024-07-03)
  • JN.1.50.2 (2024-07-03)
  • ME.1 (2024-07-03)
  • LF.5 (2024-07-10)
  • JN.1.48.3 (2024-07-10)
  • KS.1.3 (2024-07-10)
  • JN.1.65 (2024-07-10)
  • JN.1.65.1 (2024-07-10)
  • MF.1 (2024-07-10)
  • MF.2 (2024-07-10)
  • KP.3.3.2 (2024-07-10)
  • MG.1 (2024-07-10)
  • KP.4.2.3 (2024-07-10)
  • KP.2.17 (2024-07-10)
  • LB.1.3.2 (2024-07-10)
  • MH.1 (2024-07-10)
  • LB.1.8 (2024-07-10)
  • JN.1.7.9 (2024-07-10)
  • MJ.1 (2024-07-10)
  • KP.3.1.6 (2024-07-12)
  • MK.1 (2024-07-12)
  • MK.2 (2024-07-12)
  • KP.3.4.1 (2024-07-12)
  • KP.3.3.3 (2024-07-12)
  • ML.1 (2024-07-12)
  • ML.2 (2024-07-12)
  • MM.1 (2024-07-12)
  • MM.2 (2024-07-12)
  • JN.1.66 (2024-07-12)
  • MN.1 (2024-07-12)
  • KP.3.5 (2024-07-12)
  • LB.1.4.1 (2024-07-13)
  • LB.1.7.1 (2024-07-13)
  • LB.1.7.2 (2024-07-13)
  • LB.1.7.3 (2024-07-13)

SARS-CoV-2 (Mature proteins) (nextstrain/sars-cov-2/wuhan-hu-1/proteins)

  • Include newly designated Nextstrain clade 24C (KP.3)
  • All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • BA.2.86.7 (2024-06-13)
  • XDZ (2024-06-14)
  • JN.1.1.10 (2024-06-14)
  • JN.1.63 (2024-06-14)
  • JN.1.63.1 (2024-06-14)
  • XEA (2024-06-14)
  • XEB (2024-06-14)
  • XDP.2 (2024-06-14)
  • XDP.3 (2024-06-14)
  • LV.1 (2024-06-14)
  • LV.2 (2024-06-14)
  • LE.1.3 (2024-06-14)
  • LE.1.3.1 (2024-06-14)
  • JN.1.58.3 (2024-06-14)
  • KP.4.1.1 (2024-06-17)
  • KP.4.1.2 (2024-06-17)
  • KP.4.1.3 (2024-06-17)
  • LW.1 (2024-06-17)
  • LP.3 (2024-06-17)
  • KP.3.1.5 (2024-06-17)
  • KP.1.1.5 (2024-06-17)
  • XDD.3 (2024-06-29)
  • LF.3.1.1 (2024-06-29)
  • LB.1.3.1 (2024-06-29)
  • KP.2.3.4 (2024-06-29)
  • JN.1.18.6 (2024-06-29)
  • LY.2 (2024-06-29)
  • LY.1 (2024-06-29)
  • JN.1.18.7 (2024-06-29)
  • LZ.1 (2024-06-29)
  • LZ.1.1 (2024-06-29)
  • MA.1 (2024-06-29)
  • MB.1 (2024-06-29)
  • MB.1.1 (2024-06-29)
  • LP.1.1 (2024-06-29)
  • LF.4 (2024-06-29)
  • LF.4.1 (2024-06-29)
  • KP.3.3.1 (2024-06-29)
  • MC.1 (2024-06-29)
  • LU.2 (2024-07-01)
  • JN.1.64 (2024-07-01)
  • JN.1.64.1 (2024-07-01)
  • MD.1 (2024-07-01)
  • MD.1.1 (2024-07-01)
  • MD.2 (2024-07-01)
  • MD.3 (2024-07-01)
  • MD.3.1 (2024-07-01)
  • LK.2 (2024-07-03)
  • LK.2.1 (2024-07-03)
  • JN.1.7.8 (2024-07-03)
  • JN.1.50.2 (2024-07-03)
  • ME.1 (2024-07-03)
  • LF.5 (2024-07-10)
  • JN.1.48.3 (2024-07-10)
  • KS.1.3 (2024-07-10)
  • JN.1.65 (2024-07-10)
  • JN.1.65.1 (2024-07-10)
  • MF.1 (2024-07-10)
  • MF.2 (2024-07-10)
  • KP.3.3.2 (2024-07-10)
  • MG.1 (2024-07-10)
  • KP.4.2.3 (2024-07-10)
  • KP.2.17 (2024-07-10)
  • LB.1.3.2 (2024-07-10)
  • MH.1 (2024-07-10)
  • LB.1.8 (2024-07-10)
  • JN.1.7.9 (2024-07-10)
  • MJ.1 (2024-07-10)
  • KP.3.1.6 (2024-07-12)
  • MK.1 (2024-07-12)
  • MK.2 (2024-07-12)
  • KP.3.4.1 (2024-07-12)
  • KP.3.3.3 (2024-07-12)
  • ML.1 (2024-07-12)
  • ML.2 (2024-07-12)
  • MM.1 (2024-07-12)
  • MM.2 (2024-07-12)
  • JN.1.66 (2024-07-12)
  • MN.1 (2024-07-12)
  • KP.3.5 (2024-07-12)
  • LB.1.4.1 (2024-07-13)
  • LB.1.7.1 (2024-07-13)
  • LB.1.7.2 (2024-07-13)
  • LB.1.7.3 (2024-07-13)

SARS-CoV-2 (BA.2) (nextstrain/sars-cov-2/BA.2)

  • Include newly designated Nextstrain clade 24C (KP.3)
  • All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • BA.2.86.7 (2024-06-13)
  • XDZ (2024-06-14)
  • JN.1.1.10 (2024-06-14)
  • JN.1.63 (2024-06-14)
  • JN.1.63.1 (2024-06-14)
  • XEA (2024-06-14)
  • XEB (2024-06-14)
  • XDP.2 (2024-06-14)
  • XDP.3 (2024-06-14)
  • LV.1 (2024-06-14)
  • LV.2 (2024-06-14)
  • LE.1.3 (2024-06-14)
  • LE.1.3.1 (2024-06-14)
  • JN.1.58.3 (2024-06-14)
  • KP.4.1.1 (2024-06-17)
  • KP.4.1.2 (2024-06-17)
  • KP.4.1.3 (2024-06-17)
  • LW.1 (2024-06-17)
  • LP.3 (2024-06-17)
  • KP.3.1.5 (2024-06-17)
  • KP.1.1.5 (2024-06-17)
  • XDD.3 (2024-06-29)
  • LF.3.1.1 (2024-06-29)
  • LB.1.3.1 (2024-06-29)
  • KP.2.3.4 (2024-06-29)
  • JN.1.18.6 (2024-06-29)
  • LY.2 (2024-06-29)
  • LY.1 (2024-06-29)
  • JN.1.18.7 (2024-06-29)
  • LZ.1 (2024-06-29)
  • LZ.1.1 (2024-06-29)
  • MA.1 (2024-06-29)
  • MB.1 (2024-06-29)
  • MB.1.1 (2024-06-29)
  • LP.1.1 (2024-06-29)
  • LF.4 (2024-06-29)
  • LF.4.1 (2024-06-29)
  • KP.3.3.1 (2024-06-29)
  • MC.1 (2024-06-29)
  • LU.2 (2024-07-01)
  • JN.1.64 (2024-07-01)
  • JN.1.64.1 (2024-07-01)
  • MD.1 (2024-07-01)
  • MD.1.1 (2024-07-01)
  • MD.2 (2024-07-01)
  • MD.3 (2024-07-01)
  • MD.3.1 (2024-07-01)
  • LK.2 (2024-07-03)
  • LK.2.1 (2024-07-03)
  • JN.1.7.8 (2024-07-03)
  • JN.1.50.2 (2024-07-03)
  • ME.1 (2024-07-03)
  • LF.5 (2024-07-10)
  • JN.1.48.3 (2024-07-10)
  • KS.1.3 (2024-07-10)
  • JN.1.65 (2024-07-10)
  • JN.1.65.1 (2024-07-10)
  • MF.1 (2024-07-10)
  • MF.2 (2024-07-10)
  • KP.3.3.2 (2024-07-10)
  • MG.1 (2024-07-10)
  • KP.4.2.3 (2024-07-10)
  • KP.2.17 (2024-07-10)
  • LB.1.3.2 (2024-07-10)
  • MH.1 (2024-07-10)
  • LB.1.8 (2024-07-10)
  • JN.1.7.9 (2024-07-10)
  • MJ.1 (2024-07-10)
  • KP.3.1.6 (2024-07-12)
  • MK.1 (2024-07-12)
  • MK.2 (2024-07-12)
  • KP.3.4.1 (2024-07-12)
  • KP.3.3.3 (2024-07-12)
  • ML.1 (2024-07-12)
  • ML.2 (2024-07-12)
  • MM.1 (2024-07-12)
  • MM.2 (2024-07-12)
  • JN.1.66 (2024-07-12)
  • MN.1 (2024-07-12)
  • KP.3.5 (2024-07-12)
  • LB.1.4.1 (2024-07-13)
  • LB.1.7.1 (2024-07-13)
  • LB.1.7.2 (2024-07-13)
  • LB.1.7.3 (2024-07-13)

SARS-CoV-2 (XBB) (nextstrain/sars-cov-2/XBB)

  • Include newly designated Nextstrain clade 24C (KP.3)
  • All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • BA.2.86.7 (2024-06-13)
  • XDZ (2024-06-14)
  • JN.1.1.10 (2024-06-14)
  • JN.1.63 (2024-06-14)
  • JN.1.63.1 (2024-06-14)
  • XEA (2024-06-14)
  • XEB (2024-06-14)
  • XDP.2 (2024-06-14)
  • XDP.3 (2024-06-14)
  • LV.1 (2024-06-14)
  • LV.2 (2024-06-14)
  • LE.1.3 (2024-06-14)
  • LE.1.3.1 (2024-06-14)
  • JN.1.58.3 (2024-06-14)
  • KP.4.1.1 (2024-06-17)
  • KP.4.1.2 (2024-06-17)
  • KP.4.1.3 (2024-06-17)
  • LW.1 (2024-06-17)
  • LP.3 (2024-06-17)
  • KP.3.1.5 (2024-06-17)
  • KP.1.1.5 (2024-06-17)
  • XDD.3 (2024-06-29)
  • LF.3.1.1 (2024-06-29)
  • LB.1.3.1 (2024-06-29)
  • KP.2.3.4 (2024-06-29)
  • JN.1.18.6 (2024-06-29)
  • LY.2 (2024-06-29)
  • LY.1 (2024-06-29)
  • JN.1.18.7 (2024-06-29)
  • LZ.1 (2024-06-29)
  • LZ.1.1 (2024-06-29)
  • MA.1 (2024-06-29)
  • MB.1 (2024-06-29)
  • MB.1.1 (2024-06-29)
  • LP.1.1 (2024-06-29)
  • LF.4 (2024-06-29)
  • LF.4.1 (2024-06-29)
  • KP.3.3.1 (2024-06-29)
  • MC.1 (2024-06-29)
  • LU.2 (2024-07-01)
  • JN.1.64 (2024-07-01)
  • JN.1.64.1 (2024-07-01)
  • MD.1 (2024-07-01)
  • MD.1.1 (2024-07-01)
  • MD.2 (2024-07-01)
  • MD.3 (2024-07-01)
  • MD.3.1 (2024-07-01)
  • LK.2 (2024-07-03)
  • LK.2.1 (2024-07-03)
  • JN.1.7.8 (2024-07-03)
  • JN.1.50.2 (2024-07-03)
  • ME.1 (2024-07-03)
  • LF.5 (2024-07-10)
  • JN.1.48.3 (2024-07-10)
  • KS.1.3 (2024-07-10)
  • JN.1.65 (2024-07-10)
  • JN.1.65.1 (2024-07-10)
  • MF.1 (2024-07-10)
  • MF.2 (2024-07-10)
  • KP.3.3.2 (2024-07-10)
  • MG.1 (2024-07-10)
  • KP.4.2.3 (2024-07-10)
  • KP.2.17 (2024-07-10)
  • LB.1.3.2 (2024-07-10)
  • MH.1 (2024-07-10)
  • LB.1.8 (2024-07-10)
  • JN.1.7.9 (2024-07-10)
  • MJ.1 (2024-07-10)
  • KP.3.1.6 (2024-07-12)
  • MK.1 (2024-07-12)
  • MK.2 (2024-07-12)
  • KP.3.4.1 (2024-07-12)
  • KP.3.3.3 (2024-07-12)
  • ML.1 (2024-07-12)
  • ML.2 (2024-07-12)
  • MM.1 (2024-07-12)
  • MM.2 (2024-07-12)
  • JN.1.66 (2024-07-12)
  • MN.1 (2024-07-12)
  • KP.3.5 (2024-07-12)
  • LB.1.4.1 (2024-07-13)
  • LB.1.7.1 (2024-07-13)
  • LB.1.7.2 (2024-07-13)
  • LB.1.7.3 (2024-07-13)

SARS-CoV-2 (BA.2.86) (nextstrain/sars-cov-2/BA.2.86)

  • Include newly designated Nextstrain clade 24C (KP.3)
  • All 84 Pango lineages designated between 2024-06-11 and 2024-07-14 are now included, unfold below to see a list of all newly included lineages with their designation dates
Newly included lineages, with designation date in parentheses
  • BA.2.86.7 (2024-06-13)
  • XDZ (2024-06-14)
  • JN.1.1.10 (2024-06-14)
  • JN.1.63 (2024-06-14)
  • JN.1.63.1 (2024-06-14)
  • XEA (2024-06-14)
  • XEB (2024-06-14)
  • XDP.2 (2024-06-14)
  • XDP.3 (2024-06-14)
  • LV.1 (2024-06-14)
  • LV.2 (2024-06-14)
  • LE.1.3 (2024-06-14)
  • LE.1.3.1 (2...
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Assets 7
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