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@ivan-aksamentov ivan-aksamentov released this 08 Jun 17:53
· 593 commits to master since this release
2023-05-11--16-59-28--UTC
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2023-05-10

Note: this GitHub release text entry is created late - on Jun 8, 2023. The data has been released a month earlier, on May 11, 2023.

New SARS-CoV-2 dataset version (tag 2023-05-10T12:00:00Z)

  • The most terminal 50bp are now ignored/masked for reference tree placement purposes, see the Nextclade changelog for details. This feature requires Nextclade v2.14.0 or later. Most sequences will be unaffected. As the only mutation appearing in this range in the reference tree is C44T in some BA.2/4/5 and XBB sequences.
  • Labeled mutations have been updated. Criteria for inclusion have been relaxed to show slightly more non-clade defining mutations that commonly occurred within a clade, e.g. BN.1 and CH.1.1 defining mutations are now included under clade 22D (BA.2.75). This potentially worsens quality score for some sequences with such mutations.
  • Pango lineages designated between 2023-04-18 and 2023-05-09 are now included, unfold below to see a list with designation dates:
Newly included lineages, with designation date in parentheses
  • XBL.1 (2023-04-19)
  • XBL.2 (2023-04-19)
  • XBL.3 (2023-04-19)
  • XBB.2.3.6 (2023-04-19)
  • XBB.2.3.7 (2023-04-19)
  • XBB.1.34 (2023-04-20)
  • FR.1 (2023-04-21)
  • FS.1 (2023-04-21)
  • XCC (2023-04-22)
  • EG.3 (2023-04-22)
  • EG.1.2 (2023-04-22)
  • EG.1.3 (2023-04-22)
  • EG.1.4 (2023-04-22)
  • EG.4 (2023-04-22)
  • EG.5 (2023-04-22)
  • FL.3 (2023-04-22)
  • FL.4 (2023-04-22)
  • FL.5 (2023-04-22)
  • FK.1.2 (2023-04-22)
  • FT.1 (2023-04-22)
  • XAY.2.3 (2023-04-22)
  • XAY.1.1.2 (2023-04-22)
  • XAY.1.1.3 (2023-04-22)
  • XBB.1.16.2 (2023-04-22)
  • XBB.1.16.3 (2023-04-22)
  • FU.1 (2023-04-22)
  • FU.2 (2023-04-22)
  • XBB.1.5.41 (2023-04-22)
  • XBB.1.5.42 (2023-04-22)
  • FL.2.1 (2023-04-22)
  • FL.2.2 (2023-04-22)
  • XBC.1.6.1 (2023-04-23)
  • XBC.1.6.2 (2023-04-23)
  • XBC.1.6.3 (2023-04-23)
  • XBC.1.5.43 (2023-04-23)
  • XBB.1.35 (2023-04-23)
  • XBB.1.5.44 (2023-04-23)
  • XBB.1.5.45 (2023-04-23)
  • XBB.1.5.46 (2023-04-23)
  • XBB.1.6.1 (2023-04-23)
  • XBB.1.5.43 (2023-04-24)
  • XBB.1.36 (2023-04-24)
  • XBB.8.1 (2023-04-24)
  • XBB.9 (2023-04-24)
  • XBB.3.4 (2023-04-24)
  • XBB.1.5.47 (2023-04-25)
  • XBB.1.5.48 (2023-04-25)
  • XBB.1.5.49 (2023-04-25)
  • EU.1.1.1 (2023-04-26)
  • XBB.1.5.50 (2023-04-26)
  • XBB.1.5.51 (2023-04-26)
  • XBB.1.5.52 (2023-04-26)
  • FV.1 (2023-04-26)
  • XBB.1.5.53 (2023-04-26)
  • XBB.1.9.6 (2023-04-26)
  • BQ.1.2.2 (2023-04-28)
  • FW.1 (2023-05-01)
  • FW.2 (2023-05-01)
  • XBB.1.5.54 (2023-05-01)
  • EK.4 (2023-05-01)
  • XBB.2.3.8 (2023-05-01)
  • FD.3 (2023-05-03)
  • XBB.1.5.55 (2023-05-03)
  • FL.6 (2023-05-03)
  • XBB.2.3.9 (2023-05-04)
  • XBB.2.3.10 (2023-05-04)
  • FY.1 (2023-05-04)
  • FY.2 (2023-05-04)
  • FY.3 (2023-05-04)
  • FY.4 (2023-05-04)
  • FZ.1 (2023-05-05)
  • FZ.1.1 (2023-05-05)
  • FZ.2 (2023-05-05)
  • XBB.1.5.56 (2023-05-05)
  • XBB.1.16.4 (2023-05-05)
  • XBB.1.5.57 (2023-05-05)
  • FE.1.1 (2023-05-05)
  • FE.1.2 (2023-05-05)
  • GA.1 (2023-05-06)
  • GA.2 (2023-05-06)
  • GA.3 (2023-05-06)
  • CH.1.1.24 (2023-05-06)
  • CH.1.1.25 (2023-05-06)
  • CH.1.1.26 (2023-05-06)
  • DV.6 (2023-05-06)
  • CH.1.1.27 (2023-05-06)
  • XBB.1.5.58 (2023-05-06)
  • XBB.1.5.59 (2023-05-06)
  • XBB.1.5.60 (2023-05-06)
  • XBB.1.5.61 (2023-05-06)
  • XBB.1.5.62 (2023-05-06)
  • XBB.1.5.63 (2023-05-06)
  • XBB.1.5.64 (2023-05-06)
  • XBB.1.5.65 (2023-05-06)
  • XBB.1.5.66 (2023-05-06)
  • XBB.1.5.67 (2023-05-06)
  • GB.1 (2023-05-06)
  • XBB.1.16.5 (2023-05-06)
  • FD.4 (2023-05-06)
  • FL.7 (2023-05-06)
  • XBB.1.5.68 (2023-05-06)
  • XBB.1.37 (2023-05-06)
  • XBB.1.37.1 (2023-05-06)
  • XBB.1.5.69 (2023-05-07)
  • XBB.1.16.6 (2023-05-07)
  • EG.5.1 (2023-05-07)
  • GC.1 (2023-05-07)
  • GC.2 (2023-05-07)
  • FL.8 (2023-05-07)
  • FL.9 (2023-05-07)
  • FL.10 (2023-05-07)
  • FL.11 (2023-05-07)
  • CH.1.1.28 (2023-05-07)
  • FL.3.1 (2023-05-07)
  • FL.3.2 (2023-05-07)
  • FL.3.3 (2023-05-07)
  • FL.3.4 (2023-05-07)
  • XBB.1.24.1 (2023-05-07)
  • XBB.1.24.2 (2023-05-07)
  • XBB.1.24.3 (2023-05-07)
  • XBB.1.38 (2023-05-07)
  • GD.1 (2023-05-07)
  • XBB.1.39 (2023-05-07)
  • XBB.1.40 (2023-05-07)
  • GE.1 (2023-05-07)
  • XBB.2.3.11 (2023-05-07)
  • FL.1.1 (2023-05-07)
  • FL.1.2 (2023-05-07)
  • FL.1.3 (2023-05-07)
  • XBB.3.5 (2023-05-07)
  • BN.1.2.5 (2023-05-07)
  • FR.2 (2023-05-07)
  • BN.1.2.6 (2023-05-07)
  • EJ.3 (2023-05-07)
  • BN.1.3.11 (2023-05-07)
  • BQ.1.2.3 (2023-05-07)
  • BQ.1.3.1 (2023-05-07)
  • BQ.1.3.2 (2023-05-07)
  • BQ.1.33 (2023-05-07)
  • DN.2 (2023-05-07)
  • DN.3 (2023-05-07)
  • DN.3.1 (2023-05-07)
  • XBB.1.32.1 (2023-05-08)
  • FL.12 (2023-05-08)
Assets 2
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