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Add emerging subclades to H3N2 HA Nextclade config
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Adds emerging subclades as another "clade system" for the Nextclade
workflow. This change allows us to annotate emerging subclades with the
Nextclade dataset produced by this workflow.
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huddlej committed Sep 11, 2024
1 parent 9d4597e commit 17ea783
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3 changes: 3 additions & 0 deletions nextclade/config/config_dict.yaml
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Expand Up @@ -51,6 +51,9 @@ builds:
short-clade:
url: "seasonal_A-H3N2_HA/main/.auto-generated/clades.tsv"
key: "short-clade"
emerging_subclade:
url: "seasonal_A-H3N2_HA/emerging/.auto-generated/subclades.tsv"
key: "emerging_subclade"
refs:
EPI1857216:
filter: "--min-date 2019 --probabilistic-sampling --group-by year region --min-length 1500 --subsample-max-sequences 2000"
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