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correct linting
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antunderwood committed May 10, 2021
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Expand Up @@ -155,9 +155,11 @@ Output files
* `output.raxml.support` A ML tree built with RAxML-NG with support values for branches based on bootstrapping

### MultiQC

Various quality statistics are compiled from the previous outputs using the [MultiQC](https://multiqc.info/) software:

#### Overall Statistics

A compilation of statistics about read content, mapping and variants
![General Statistics](images/multiqc_general_stats.png)

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Statistics gathered when mapping reads
![Mapping Statistics](images/multiqc_mapping_stats.png)


#### Varinat Statistics

Statistics gathered when calling variants after filtering
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