singularity update dockerbuild

nf-core · Jan 9, 2024 · 7393761 · 7393761
1 parent cc888aa
commit 7393761
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diff --git a/.github/workflows/build-docker-image.yml b/.github/workflows/build-docker-image.yml
@@ -24,4 +24,4 @@ jobs:
         with:
           file: modules/local/ampliconsuite/Dockerfile
           push: true
-          tags: "quay.io/nf-core/prepareaa:1.0.3"
+          tags: "quay.io/nf-core/prepareaa:1.0.4"
diff --git a/modules/local/ampliconsuite/Dockerfile b/modules/local/ampliconsuite/Dockerfile
@@ -29,3 +29,13 @@ USER $NB_UID
 
 # Start a login bash shell by default
 CMD ["/bin/bash", "-l"]
+
+# Create an entrypoint script
+RUN echo '#!/bin/bash' > /entrypoint.sh && \
+    echo 'source ~/micromamba/etc/profile.d/mamba.sh' >> /entrypoint.sh && \
+    echo 'micromamba activate base' >> /entrypoint.sh && \
+    echo 'exec "$@"' >> /entrypoint.sh && \
+    chmod +x /entrypoint.sh
+
+ENTRYPOINT ["/entrypoint.sh"]
+CMD ["/bin/bash", "-l"]