Updated dockerfile for ampliconsutie

nf-core · Jan 9, 2024 · cc888aa · cc888aa
1 parent c5c362c
commit cc888aa
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diff --git a/.github/workflows/build-docker-image.yml b/.github/workflows/build-docker-image.yml
@@ -24,4 +24,4 @@ jobs:
         with:
           file: modules/local/ampliconsuite/Dockerfile
           push: true
-          tags: "quay.io/nf-core/prepareaa:1.0.2"
+          tags: "quay.io/nf-core/prepareaa:1.0.3"
diff --git a/modules/local/ampliconsuite/Dockerfile b/modules/local/ampliconsuite/Dockerfile
@@ -22,6 +22,7 @@ RUN micromamba install --yes --name base -c bioconda -c conda-forge -c mosek \
 
 # Append micromamba activation command to .bashrc
 RUN echo "micromamba activate base" >> ~/.bashrc
+RUN echo "export PATH=/opt/conda/bin:\$PATH" >> ~/.bashrc
 
 # Switch back to the default user
 USER $NB_UID