From cc888aa5fbc167a27f101847191ee05dd1e1eff4 Mon Sep 17 00:00:00 2001 From: DSchreyer Date: Tue, 9 Jan 2024 13:55:00 +0000 Subject: [PATCH] Updated dockerfile for ampliconsutie --- .github/workflows/build-docker-image.yml | 2 +- modules/local/ampliconsuite/Dockerfile | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/build-docker-image.yml b/.github/workflows/build-docker-image.yml index f1325730..d4a194a6 100644 --- a/.github/workflows/build-docker-image.yml +++ b/.github/workflows/build-docker-image.yml @@ -24,4 +24,4 @@ jobs: with: file: modules/local/ampliconsuite/Dockerfile push: true - tags: "quay.io/nf-core/prepareaa:1.0.2" + tags: "quay.io/nf-core/prepareaa:1.0.3" diff --git a/modules/local/ampliconsuite/Dockerfile b/modules/local/ampliconsuite/Dockerfile index 15933ce0..ccbf65c7 100644 --- a/modules/local/ampliconsuite/Dockerfile +++ b/modules/local/ampliconsuite/Dockerfile @@ -22,6 +22,7 @@ RUN micromamba install --yes --name base -c bioconda -c conda-forge -c mosek \ # Append micromamba activation command to .bashrc RUN echo "micromamba activate base" >> ~/.bashrc +RUN echo "export PATH=/opt/conda/bin:\$PATH" >> ~/.bashrc # Switch back to the default user USER $NB_UID