crg.config

//Profile config names for nf-core/configs
params {
    config_profile_description = 'Centre for Genomic Regulation (CRG) cluster profile provided by nf-core/configs'
    config_profile_contact = 'Jose Espinosa-Carrasco (@joseespinosa)'
    config_profile_url = 'http://www.linux.crg.es/index.php/Main_Page'
}

if (System.getenv("SLURM_CONF")) {
    process {
        executor = 'slurm'
        queue    = 'genoa64'
        clusterOptions = {
            switch (task.time) {
                case { it > 168.h } :
                    return '--qos=ethernal'
                case (48<..168).h:
                    return '--qos=marathon'
                case (24<..48).h:
                    return '--qos=vlong'
                case (12<..24).h:
                    return '--qos=long'
                case (6<..12).h:
                    return '--qos=normal'
                case (3<..6).h:
                    return '--qos=short'
                case (1<..3).h:
                    return '--qos=shorter'
                default:
                    return '--qos=vshort'
            }
        }
    }
} else {
    process {
        executor = 'crg'
        beforeScript = 'module load Singularity/4.0.2'
        queue    = 'short-centos79,long-centos79'
    }
}

singularity {
    enabled = true
}