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Update Pipeline to Nextflow DSL2 #65

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meret-haeusler opened this issue Jun 25, 2024 · 0 comments
Open

Update Pipeline to Nextflow DSL2 #65

meret-haeusler opened this issue Jun 25, 2024 · 0 comments

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@meret-haeusler
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Hi @everyone,

I tried running the nf-core/coproid pipeline with this command:
nextflow run nf-core/coproid -r 1.1.1 -profile test,docker --outdir <output dir>

But I got this error:
Nextflow DSL1 is no longer supported — Update your script to DSL2, or use Nextflow 22.10.x or earlier

It'd be great, if you would consider to update the pipeline to Nextflow DSL2 to avoid issues with newer Nextflow versions.

Thanks!

Cheers, Meret
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@meret-haeusler