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modules.json
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modules.json
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{
"name": "nf-core/createpanelrefs",
"homePage": "https://github.com/nf-core/createpanelrefs",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"cnvkit/batch": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/annotateintervals": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/bedtointervallist": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/collectreadcounts": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/createreadcountpanelofnormals": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/createsequencedictionary": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/createsomaticpanelofnormals": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["bam_create_som_pon_gatk"]
},
"gatk4/determinegermlinecontigploidy": {
"branch": "master",
"git_sha": "d6dd4ddea1663edbf15f40e089cc16db96e75f1d",
"installed_by": ["modules"]
},
"gatk4/filterintervals": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/genomicsdbimport": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["bam_create_som_pon_gatk"]
},
"gatk4/germlinecnvcaller": {
"branch": "master",
"git_sha": "d6dd4ddea1663edbf15f40e089cc16db96e75f1d",
"installed_by": ["modules"]
},
"gatk4/indexfeaturefile": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/intervallisttools": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gatk4/mutect2": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["bam_create_som_pon_gatk"]
},
"gatk4/preprocessintervals": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_create_som_pon_gatk": {
"branch": "master",
"git_sha": "b0783b07beb65cac505fa6202e8f670437637b45",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
"installed_by": ["subworkflows"]
}
}
}
}
}
}