New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Support creating a PoN with PureCN #36

Open

lbeltrame opened this issue Oct 29, 2024 · 0 comments

Assignees

Labels

lbeltrame commented Oct 29, 2024

Description of feature

This came up during the Barcelona Hackathon. PureCN can build a panel of normals "database" from coverage data and an optional VCF (https://www.bioconductor.org/packages/devel/bioc/vignettes/PureCN/inst/doc/Quick.html#42_NormalDB).
Since PureCN doesn't support CRAM files at the moment (lima1/PureCN#244) the plan is to use GATK denoised coverage data.

Adding this so I won't forget.

lbeltrame added the enhancement label

lbeltrame self-assigned this

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment