Skip to content

[2.5.0] - Bopfingen - 2023-11-07
Compare
Choose a tag to compare
@TCLamnidis TCLamnidis released this 07 Nov 12:46
· 27 commits to master since this release
2.5.0
a2c9f87
This commit was created on GitHub.com and signed with GitHub’s verified signature. The key has expired.
GPG key ID: 4AEE18F83AFDEB23
Expired
Learn about vigilant mode.

Added

  • #1020 Added mapDamage2 as an alternative for damage calculation.

Fixed

  • #1017 Fixed file name collision in niche cases with multiple libraries of multiple UDG treatments.
  • #1024 multiqc_general_stats.txt is now generated even if the table is a beeswarm plot in the report.
  • #655 Updated RG tags for all mappers. RG-id now includes Sample as well as Library ID. Added LB: tag with the library ID.
  • #1031 Always index fasta regardless of mapper. This ensures that DamageProfiler and genotyping processes get submitted when using bowtie2 and not providing a fasta index.

Dependencies

  • multiqc: 1.14 -> 1.16

Deprecated

Assets 2
Loading