Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT

[wdiao-zju]

  It runs well in the non-basecalling, non-demultiplexing, non-alignment pipeline. However, it not runs well in the non-basecalling, non-demultiplexing pipeline. The test dataset is from nf-core/test-datasets. The version of nanoseq is v2.01. Code is as follows:

nextflow run nf-core/nanoseq
--input samplesheet_nobc_nodx.csv
--protocol cDNA
--skip_basecalling
--skip_demultiplexing
--max_cpus 40
--max_memory 100.GB
-profile docker

Error information is as follows (Note: the subsequent process such as alignment is okay, and I found only html file not png file in work/"hash dir"/fastq/MCF7_R1):
"
Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT (MCF7_R1)'

Caused by:
Missing output file(s) fastq/MCF7_R1/*.png expected by process NFCORE_NANOSEQ:NANOSEQ:QCFASTQ_NANOPLOT_FASTQC:NANOPLOT (MCF7_R1)
"

[trum994]

I'm seeing a similar issue with other nanoplot processes:

Error executing process > 'NFCORE_NANOSEQ:NANOSEQ:QCBASECALL_PYCOQC_NANOPLOT:NANOPLOT (sample1)'

Caused by:
Missing output file(s) summary/*.png expected by process NFCORE_NANOSEQ:NANOSEQ:QCBASECALL_PYCOQC_NANOPLOT:NANOPLOT (sample1)

[trum994]

@wdiao-zju if you go into that summary directory and open the *log file what's the error message that you see? I created an issue at Nanoplot here.