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37 Open 76 Closed
37 Open 76 Closed
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Issues list

Replace VCF_TO_TAB and VCF_TO_SNPALN with a single R script or other command
#122 opened Nov 21, 2024 by zachary-foster
ASSIGN_CONTEXT_REFERENCES error
#121 opened Nov 21, 2024 by cahuparo
1
Consider changing MSN threshold to number of SNPs
#120 opened Nov 19, 2024 by zachary-foster
Add scale bars to trees
#119 opened Nov 19, 2024 by zachary-foster
BUSCO error = BrokenPipeError: [Errno 32] Broken pipe
#118 opened Nov 19, 2024 by cahuparo
Name dropdown entires for MSN by reference taxon name
#117 opened Nov 18, 2024 by zachary-foster
Consider the abundance of the taxon when choosing references.
#116 opened Nov 18, 2024 by zachary-foster
Add option to specify number of replicates when downloading references
#115 opened Nov 18, 2024 by zachary-foster
accept assemblies as well as reads
#114 opened Nov 8, 2024 by cahuparo
Switch from entrez commands to datasets commands for downloading assembly metadata
#113 opened Nov 7, 2024 by zachary-foster
Out of date spades may be causing errors with assemblies bug Something isn't working
#109 opened Nov 4, 2024 by cahuparo
2
Double quotes in queries in input causes parsing errors with the new nf-core template bug Something isn't working
#108 opened Oct 31, 2024 by zachary-foster
Add module to check quality of Spades assembly
#105 opened Oct 28, 2024 by logankblair
Change assign_context_references.R to give more informative error message
#104 opened Oct 28, 2024 by logankblair
Failed rendering report
#103 opened Oct 23, 2024 by buchanri
2
Add header to FIND_ASSEMBLIES output enhancement New feature or request good first issue Good for newcomers
#100 opened Oct 22, 2024 by zachary-foster
Error when some assembly metadata tsv files are empty and don't contain accessions to download bug Something isn't working
#94 opened Sep 18, 2024 by masudermann
Add maximum file size parameter to filtered downloaded assemblies and reads
#91 opened Aug 14, 2024 by zachary-foster
Fail to create conda environment for sourmash_sketch
#87 opened Jul 25, 2024 by buchanri
1
BBmap_Sendsketch not finding SRA
#85 opened Jul 18, 2024 by buchanri
Add subsetting of variants when there are more than a user-defined maximum
#80 opened Jul 2, 2024 by zachary-foster
Make SUBSET module name its output by the sample ID
#79 opened Jun 13, 2024 by zachary-foster
BUSCO graphs for assembled genomes
#77 opened Jun 3, 2024 by grunwald
2
We need to review the step where we convert Graphtyper VCF outputs files to tabular format using vcf-to-tab bug Something isn't working
#76 opened May 31, 2024 by masudermann
1
Report fails to render if I don't have POCP matrix-an issue when dealing with eukaryotic datasets bug Something isn't working
#75 opened May 31, 2024 by masudermann
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