Report fails to render if I don't have POCP matrix-an issue when dealing with eukaryotic datasets

[masudermann]

Description of the bug

This is more on the psminer side of things, but my report fails to render if I don't have a pocp matrix after running PIRATE. This is a problem when dealing with non-prokaryotic datasets.

We need to make some sort of conditional statements for when to run these select lines and POCP-related chunks in 'index.qmd'.

Command used and terminal output

#The line of code causing errors (in parse_inputs) chunk
pocp_matrix <- psminer::parse_pocp_matrix(pocp_matrix_path)

Relevant files

No response

System information

No response