BBmap_Sendsketch not finding SRA

[buchanri]

After running and getting this error, sendsketch is not getting a hit for a SRA I chose. It then moves on to this step but errors because it didn't get any hits for the SRA to begin with.

ERROR ~ Error executing process > 'PATHOGENSURVEILLANCE:PREPARE_INPUT:INITIAL_CLASSIFICATION (SRA_NCBISRR8356409)'

Caused by:
  Process `PATHOGENSURVEILLANCE:PREPARE_INPUT:INITIAL_CLASSIFICATION (SRA_NCBISRR8356409)` terminated with an error exit status (1)


Command executed:

  sendsketch_filter.R SRA_NCBISRR8356409.txt
  
  KINGDOM="$(cat kingdom.txt)"
  CLASS="$(cat classification.txt)"
  
  mv species.txt SRA_NCBISRR8356409_species.txt
  mv genera.txt SRA_NCBISRR8356409_genera.txt
  mv families.txt SRA_NCBISRR8356409_families.txt
  
  cat <<-END_VERSIONS > versions.yml
  "PATHOGENSURVEILLANCE:PREPARE_INPUT:INITIAL_CLASSIFICATION":
      r-base: $(echo $(R --version 2>&1) | sed 's/^.*R version //; s/ .*$//')
  END_VERSIONS

Command exit status:
  1

Command output:
  (empty)

Command error:
  Error in writeLines(data$taxonomy[1], "classification.txt") : 
    can only write character objects
  Execution halted

Work dir:
  /media/changlab/changlab4/paradarc/paper1_bra/scripts/pathogensurveillance/work/62/831f3690c47314df4733c9d3915a94

Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`

 -- Check '.nextflow.log' file for details

Here is the BBmap_sendsketch work output:

Query: SRR8356409.fastq.gz      DB: RefSeq      SketchLen: 8    Seqs: 118       Bases: 17818    gSize: 61       GC: 0.545       Quality: 0.3483 AvgCount: 5.375 Depth: 5.354    File: SRR8356409.fastq.gz
No hits.

work/b6/7cc4098376958ceb73c5573facf2f6/SRA_NCBISRR8356409.txt 

But it should be able to find it because on the the ncbi website it shows that it is a good option. https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=492229