Generate samplesheet for nf-core/mag

[CarsonJM]

Description of feature

Add option to automatically generate a samplesheet than can be input into nf-core/mag

[lborcard]

from which original format you would like to implement that?

[jfy133]

The idea is to make a samplesheet with the 'processed reads' (e.g, clipped and filtered), so you can skip those sections of the mag pipeline.

@CarsonJM isnl doing something similar on mag for phageanotator if you're interested?

[jfy133]

Here: nf-core/mag#543

There is a lot of extra stuff in that PR, but the thing is the subworkflow itself.

Maybe @sofstam and @LilyAnderssonLee can orient you if you're interested? I'm working on something else this Hackathon

[CarsonJM]

I'll be into work shortly and am more than happy to help out!