diff --git a/Test/run_test.sh b/Test/run_test.sh index 8f221dc..794e263 100644 --- a/Test/run_test.sh +++ b/Test/run_test.sh @@ -10,7 +10,13 @@ cd /media/inter/pipelines/AutDeNovo OutputFolder=Test/SomeFish \ Fwd=Test/subset/Illumina/Garra474_1.fq.gz \ Rev=Test/subset/Illumina/Garra474_2.fq.gz \ - ONT=/media/inter/pipelines/AutDeNovo/Test/subset/ONT \ - PB=/media/inter/pipelines/AutDeNovo/Test/subset/PacBio \ + ONT=Test/subset/ONT \ + PB=Test/subset/PacBio \ + threads=10 \ + RAM=20 \ + RAMAssembly=20 \ + decont=no \ + SmudgePlot=no \ + BuscoDB=vertebrata_odb10 \ Trimmer=Atria \ - BuscoDB=vertebrata_odb10 + Racon=4