v.2.3

v.2.3 (16/01/2023)

Minor update with several improvements

• Optionally set minimum read length and base quality thresholds for trimming of Illumina data.
• Bug fixes

v.2.2

Minor update with several improvements

• Optionally perform polishing of raw contigs with Racon
• Bug fixes

v.2.1

Minor update with several improvements

• Optionally choose between four different trimming programs for Illumina data
• Bug fixes

v.2.0

Major update with several improvements

• Define requested # of threads
• Define requested RAM memory for all analyses except the de-novo assembly
• Specifically define requested RAM memory for de-novo assembly
• Optionally decontaminate raw reads with Kraken
• Optionally estimate ploidy with SmudgePlot

Initial Release v.1.0

What's Changed

• Create LICENSE by @capoony in #1

New Contributors

• @capoony made their first contribution in #1

Full Changelog: https://github.com/nhmvienna/AutDeNovo/commits/v.1.0