Add ska.rust citation

nickjcroucher · May 27, 2024 · d5091b5 · d5091b5
1 parent 4b2488f
commit d5091b5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/python/scripts/generate_ska_alignment.py b/python/scripts/generate_ska_alignment.py
@@ -118,7 +118,7 @@ def ska_map_sequences(seq, k = None, ref = None):
                              ' --out ' + args.out + '.csv',
                             shell = True)
 
-    sys.stderr.write("Completed generating alignment with ska2 (https://github.com/bacpop/ska.rust)\n")
+    sys.stderr.write("Completed generating alignment with ska2 (https://github.com/bacpop/ska.rust)\nPlease cite https://doi.org/10.1101/2024.03.25.586631\n")
 
     # Clean up
     if not args.no_cleanup: