diff --git a/README.md b/README.md index c0f659d..1fd8593 100644 --- a/README.md +++ b/README.md @@ -3,15 +3,11 @@ R and stan package for the estimation of microbial progression rates This package uses Bayesian models implemented in stan to estimate the rates at which microbes progress from carriage to disease using case and carrier data. -Pre-print: [![DOI:10.1101/2021.01.08.425840](http://img.shields.io/badge/DOI-10.1101/2021.09.01.458483-B31B1B.svg)](https://doi.org/10.1101/2021.09.01.458483) - -Release: [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5762037.svg)](https://doi.org/10.5281/zenodo.5762037) - -License: [![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-brightgreen.svg)](https://github.com/nickjcroucher/progressionEstimation/blob/master/LICENSE) - -Build: ![build](https://github.com/nickjcroucher/progressionEstimation/workflows/build/check-standard.yaml/badge.svg) - -Code coverage: [![codecov](https://codecov.io/gh/nickjcroucher/progressionEstimation/branch/main/graph/badge.svg?token=CZ63KCRN63)](https://codecov.io/gh/nickjcroucher/progressionEstimation) + [![DOI:10.1101/2021.01.08.425840](http://img.shields.io/badge/DOI-10.1101/2021.09.01.458483-B31B1B.svg)](https://doi.org/10.1101/2021.09.01.458483) + [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.5762037.svg)](https://doi.org/10.5281/zenodo.5762037) +[![License: GPL v3](https://img.shields.io/badge/License-GPL%20v3-brightgreen.svg)](https://github.com/nickjcroucher/progressionEstimation/blob/master/LICENSE) +[![R-CMD-check](https://github.com/nickjcroucher/progressionEstimation/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/nickjcroucher/progressionEstimation/actions/workflows/check-standard.yaml) + [![codecov](https://codecov.io/gh/nickjcroucher/progressionEstimation/branch/main/graph/badge.svg?token=CZ63KCRN63)](https://codecov.io/gh/nickjcroucher/progressionEstimation) ## Quick start