From cde9a836fbab13fadaea68d2a2002d00b34bf0b0 Mon Sep 17 00:00:00 2001
From: Amirhossein Naghsh Nilchi <amirnnilchi@gmail.com>
Date: Sat, 1 Feb 2025 20:59:07 +0100
Subject: [PATCH] correct path

---
 ...interactivetool_cellxgene_mouse_sciatic_nerve.xml | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/tools/interactive/interactivetool_cellxgene_mouse_sciatic_nerve.xml b/tools/interactive/interactivetool_cellxgene_mouse_sciatic_nerve.xml
index 44288f2b231e..a73eaf157048 100644
--- a/tools/interactive/interactivetool_cellxgene_mouse_sciatic_nerve.xml
+++ b/tools/interactive/interactivetool_cellxgene_mouse_sciatic_nerve.xml
@@ -12,7 +12,7 @@
     </stdio>
     <command><![CDATA[
     #if $data == "complete":
-        cellxgene launch --host 0.0.0.0 --port 80  --title mouse_sciatic_nerve --user-generated-data-dir annotation_files "/data/all_final_population.h5ad"   &&
+        cellxgene launch --host 0.0.0.0 --port 80  --title mouse_sciatic_nerve --user-generated-data-dir annotation_files "/data/all.h5ad"   &&
     #else if $data == "Adipocytes":
         cellxgene launch --host 0.0.0.0 --port 80  --title mouse_sciatic_nerve_adipocytes --user-generated-data-dir annotation_files "/data/adipo.h5ad"   &&
     #else:
@@ -33,7 +33,6 @@
         <collection name="user_generated" type="list" label="CellxGene user annotations and gene sets">
             <discover_datasets pattern="__name_and_ext__" directory="annotation_files/"/>
         </collection>
-
     </outputs>
     <tests>
     </tests>
@@ -43,9 +42,10 @@ This tool provides an interactive environment to visualize single cell RNA-seq d
 Title: FGF signaling modulates a chondrocyte-like state of peripheral nerve fibroblast during aging.
 
 How to use this tool:
-1. Select the dataset you want to visualize.
-2. Click on the "Run tool" button.
-3. Wait for a few seconds for the tool to start.
-4. click on the eye icon to open the visualization in a new tab. (or alternatively, click on the "Interactive tools" bottom on the top left corner of the page and select the tool from the list)
+
+- 1. Select the dataset you want to visualize.
+- 2. Click on the "Run tool" button.
+- 3. Wait for a few seconds for the tool to start.
+- 4. click on the eye icon to open the visualization in a new tab. (or alternatively, click on the "Interactive tools" bottom on the top left corner of the page and select the tool from the list)
 ]]></help>
 </tool>