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setup.html
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<!DOCTYPE html>
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<title>2 Setup | README.utf8</title>
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<li>CorrelAid Data Journey </li>
<li class="divider"></li>
<li class="chapter" data-level="1" data-path="correlaid-data-journey.html"><a href="correlaid-data-journey.html"><i class="fa fa-check"></i><b>1</b> CorrelAid Data Journey</a></li>
<li class="chapter" data-level="2" data-path="setup.html"><a href="setup.html"><i class="fa fa-check"></i><b>2</b> Setup</a>
<ul>
<li class="chapter" data-level="2.1" data-path="setup.html"><a href="setup.html#install-packages-from-renv"><i class="fa fa-check"></i><b>2.1</b> Install packages from renv</a></li>
<li class="chapter" data-level="2.2" data-path="setup.html"><a href="setup.html#knit-the-book"><i class="fa fa-check"></i><b>2.2</b> Knit the book</a></li>
<li class="chapter" data-level="2.3" data-path="setup.html"><a href="setup.html#serve-the-book"><i class="fa fa-check"></i><b>2.3</b> Serve the book</a></li>
</ul></li>
<li class="chapter" data-level="3" data-path="inspiration.html"><a href="inspiration.html"><i class="fa fa-check"></i><b>3</b> Inspiration</a></li>
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<h1>
<i class="fa fa-circle-o-notch fa-spin"></i><a href="./"></a>
</h1>
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<section class="normal" id="section-">
<div id="setup" class="section level1" number="2">
<h1><span class="header-section-number">2</span> Setup</h1>
<div id="install-packages-from-renv" class="section level2" number="2.1">
<h2><span class="header-section-number">2.1</span> Install packages from renv</h2>
<div class="sourceCode" id="cb1"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb1-1"><a href="setup.html#cb1-1"></a><span class="kw">install.packages</span>(<span class="st">"renv"</span>)</span>
<span id="cb1-2"><a href="setup.html#cb1-2"></a>renv<span class="op">::</span><span class="kw">restore</span>()</span></code></pre></div>
<p>This should install all necessary packages.</p>
<p>If it doesn’t work, try to run the <code>library</code> statements in the first chunk in <code>index.Rmd</code> where all packages are loaded and install those that you are missing.</p>
</div>
<div id="knit-the-book" class="section level2" number="2.2">
<h2><span class="header-section-number">2.2</span> Knit the book</h2>
<p>in the R console</p>
<div class="sourceCode" id="cb2"><pre class="sourceCode r"><code class="sourceCode r"><span id="cb2-1"><a href="setup.html#cb2-1"></a>bookdown<span class="op">::</span><span class="kw">render_book</span>(<span class="st">'index.Rmd'</span>, <span class="st">'bookdown::gitbook'</span>)</span></code></pre></div>
<p>or use the shortcut for knitting (Ctrl+Shift+K / Cmd+Shift+K) while having open any of the Rmd files.</p>
</div>
<div id="serve-the-book" class="section level2" number="2.3">
<h2><span class="header-section-number">2.3</span> Serve the book</h2>
<p>For working locally on the book, you can also <em>serve</em> the book by running</p>
<pre><code>bookdown::serve_book()</code></pre>
<p>in the R console. This will start a server on <code>localhost:4321</code> where you can see the book and it will update whenever you change (and save) a Rmd file.</p>
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