pytest.yml

name: Pytest

on:
  push:
    branches: [ '*' ]
    tags: [ '*' ]
  pull_request:
    branches: [ master, 'maint/*' ]

defaults:
  run:
    shell: bash

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

permissions:
  contents: read

jobs:
  build:
    if: "!contains(github.event.head_commit.message, '[skip ci]')"
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.10', '3.11']

    steps:
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}
    - uses: actions/checkout@v4
      with:
        fetch-depth: 0
    - name: Install nibabies
      run: |
        python -m venv /tmp/venv
        source /tmp/venv/bin/activate
        python -m pip install -U pip
        python -m pip install ".[test]"
    - name: Run Pytest
      run: |
        source /tmp/venv/bin/activate
        pytest -sv --doctest-modules --cov nibabies --cov-report xml nibabies
    - name: Submit coverage
      uses: codecov/codecov-action@v3
      with:
        files: coverage.xml