v1.1.0

🚀 Enhancement

• Add support for a custom seqinfo to extract from DICOMs any additional metadata desired for a heuristic #581 (@yarikoptic @bpinsard)
• codespell: ignore "build" folder which might be on the system #581 (@yarikoptic)

Authors: 2

• Basile (@bpinsard)
• Yaroslav Halchenko (@yarikoptic)

v1.0.2

🐛 Bug Fix

• properly remove GE multiecho bvals/bvecs #728 (@bpinsard)
• datalad sensitive marking fixes #739 (@bpinsard)
• Reject "Missing images" in sensor-dicoms #735 (@chaselgrove)

⚠️ Pushed to master

• Adding workflow figure (@TheChymera)
• Added figures to master branch (@TheChymera)

🏠 Internal

• auto 11.0.5 is needed to avoid hitting some "Error: fatal: ... not an integer" bug #746 (@yarikoptic)
• Fix - auto is in ~/, not in the PATH #745 (@yarikoptic)
• Make it possible to review auto version -v output during release + adjust that workflow step description #743 (@yarikoptic)
• gh-actions: Bump codecov/codecov-action from 3 to 4 #736 (@dependabot[bot] @yarikoptic)
• gh-actions: Bump actions/setup-python from 4 to 5 #723 (@dependabot[bot])

📝 Documentation

• Adjust wording on heuristics page -- do not claim creating some skeleton #741 (@yarikoptic)
• Document how to release and add changelog entries #737 (@asmacdo @yarikoptic)
• Add dianne tutorials #734 (@asmacdo @yarikoptic)
• Add documentation building instructions #730 (@asmacdo)
• Allowing RTD to access images under the same path as README #734 (@TheChymera)
• Using environment figure in about section #730 (@TheChymera)
• Make README more concrete #724 (@asmacdo)

Authors: 6

• @chaselgrove
• @dependabot[bot]
• Austin Macdonald (@asmacdo)
• Basile (@bpinsard)
• Horea Christian (@TheChymera)
• Yaroslav Halchenko (@yarikoptic)

v1.0.1

🐛 Bug Fix

• Drop Python 3.7 support #722 (@yarikoptic)
• ReproIn: give an informative assertion message when multiple values are found #718 (@yarikoptic)
• Convert assertion into a warning that we would not use dicom dir tempate option #709 (@yarikoptic)
• Do not demand --files for all commands, even those which do not care about it (like populate-intended-for) #708 (@yarikoptic)

⚠️ Pushed to master

• Add script to sensor dicoms -- for the error where dcm2niix might or might not fail but issues an Error (@yarikoptic)

🏠 Internal

• Ran pre-commit on everything, black decided to adjust some formatting #721 (@yarikoptic)
• Make sensor-dicoms use gnu-getopt if present (on OSX) #721 (@yarikoptic)

Authors: 1

• Yaroslav Halchenko (@yarikoptic)

v1.0.0

💥 Breaking Change

• gh-actions: Bump actions/checkout from 3 to 4 #703 (@dependabot[bot])

🚀 Enhancement

• Fix inconsistent behavior of existing session when using -d compared to --files option: raise an AssertionError instead of just a warning #682 (@neurorepro)

🐛 Bug Fix

• Various tiny enhancements flake etc demanded #702 (@yarikoptic)
• Boost claimed BIDS version to 1.8.0 from 1.4.1 #699 (@yarikoptic)
• Point to Courtois-neuromod heuristic #702 (@yarikoptic)

🏠 Internal

• Add codespell to lint tox env #706 (@yarikoptic)
• test-compare-two-versions.sh: also ignore differences in HeudiconvVersion field in jsons since we have it there now #685 (@yarikoptic)

📝 Documentation

• Add description of placeholders which could be used in the produced templates #681 (@yarikoptic)

Authors: 3

• @dependabot[bot]
• Michael (@neurorepro)
• Yaroslav Halchenko (@yarikoptic)

v0.13.1

🐛 Bug Fix

• Make .subsecond optional in BIDS/DICOM datetime entries #675 (@yarikoptic)

🏠 Internal

• gh-actions: Bump codespell-project/actions-codespell from 1 to 2 #677 (@dependabot[bot])
• Replace (no longer used) Travis badge with GitHub action one (for test) #677 (@yarikoptic)

Authors: 2

• @dependabot[bot]
• Yaroslav Halchenko (@yarikoptic)

v0.13.0

🚀 Enhancement

• Add type annotations #656 (@jwodder @yarikoptic)
• ENH: Support extracting DICOMs from ZIP files (and possibly other archives) by switching to use shutil.unpack_archive instead of tarfile module functionality #471 (@HippocampusGirl @psadil)
• Allow filling of acq_time when AcquisitionDate AcquisitionTime missing #614 (@psadil)

🐛 Bug Fix

• BF(?): make _setter images be taken as scouts - only DICOMs are saved #570 (@yarikoptic)
• Adjust .mailmap to account for mapping various folks with multiple emails so that git shortlog -sn -e provides entries without duplicates #570 (@yarikoptic)
• Make an embed_dicom_and_nifti_metadata() annotation work on Python 3.7 #673 (@jwodder)
• Merge branch 'feature_dicom_compresslevel' #673 (@yarikoptic)
• Update heudiconv/dicoms.py #669 (@octomike)
• Don't call logging.basicConfig() in __init__.py #659 (@jwodder)

⚠️ Pushed to master

• Mailmapping more contributors (@yarikoptic)
• Adjust comment and remove trailing space flipping linting (@yarikoptic)

🏠 Internal

• Declare custom_grouping return type instead of casting #671 (@jwodder)
• Use pydicom.dcmread() instead of pydicom.read_file() #668 (@jwodder)
• Add sample_nifti.json to .gitignore #663 (@jwodder)
• Write command arguments as lists of strings instead of splitting strings on whitespace #664 (@jwodder)
• Add & apply pre-commit and lint job #658 (@jwodder)
• Fix some strings with \ (make them raw or double-), improve pytest config: move to tox.ini, make unknown warnings into errors #660 (@jwodder)
• Replace py.path with pathlib #654 (@jwodder)

🧪 Tests

• Make test_private_csa_header test write to temp dir #666 (@jwodder)

🔩 Dependency Updates

• Replace third-party mock library with stdlib's unittest.mock #661 (@jwodder)
• Remove kludgy support for older versions of pydicom and dcmstack #662 (@jwodder)
• Remove use of six #655 (@jwodder)

Authors: 5

• John T. Wodder II (@jwodder)
• Lea Waller (@HippocampusGirl)
• Michael (@octomike)
• Patrick Sadil (@psadil)
• Yaroslav Halchenko (@yarikoptic)

v0.12.2

🏠 Internal

• [DATALAD RUNCMD] produce updated dockerfile #652 (@yarikoptic)

Authors: 1

• Yaroslav Halchenko (@yarikoptic)

v0.12.1

🐛 Bug Fix

• Re-add explicit instructions to install dcm2niix "manually" and remove it from install_requires #651 (@yarikoptic)

📝 Documentation

• Contributing guide. #641 (@TheChymera)
• Reword and correct punctuation on installation.rst #643 (@yarikoptic @candleindark)

Authors: 3

• Horea Christian (@TheChymera)
• Isaac To (@candleindark)
• Yaroslav Halchenko (@yarikoptic)

v0.12.0

🚀 Enhancement

• strip non-alphanumeric from session ids too #647 (@keithcallenberg @yarikoptic)

🐛 Bug Fix

• Docker images: tag also as "unstable", strip "v" prefix, and avoid building in non-release workflow for releases. #642 (@yarikoptic)
• add install link to README #640 (@asmacdo)
• Setting git author and email in test environment #631 (@TheChymera)
• Duecredit dcm2niix #622 (@yarikoptic)
• Do not issue warning if cannot parse _task entity #621 (@yarikoptic)
• Provide codespell config and workflow #619 (@yarikoptic)
• BF: Use .get in group_dicoms_into_seqinfos to not puke if SeriesDescription is missing #622 (@yarikoptic)
• DOC: do provide short version for sphinx #609 (@yarikoptic)

⚠️ Pushed to master

• DOC: add clarification on where docs/requirements.txt should be "installed" from (@yarikoptic)
• fix minor typo (@yarikoptic)
• DOC: fixed the comment. Original was copy/pasted from DataLad (@yarikoptic)

🏠 Internal

• dcm2niix explicitly noted as a (PyPI) dependency and removed from being installed via apt-get etc #628 (@TheChymera @yarikoptic)

📝 Documentation

• Reword number of intended ideas in README.rst #639 (@candleindark)
• Add a bash anon-cmd to be used to incrementally anonymize sids #615 (@yarikoptic)
• Reword and correct punctuation on usage.rst #644 (@candleindark @yarikoptic)
• Clarify the infotodict function #645 (@yarikoptic)
• Added distribution badges #632 (@TheChymera)
• Capitalize sentences and end sentences with period #629 (@candleindark)
• Tune up .mailmap to harmonize Pablo, Dae and Mathias #629 (@yarikoptic)
• Add HOWTO 101 section, with references to ReproIn to README.rst #623 (@yarikoptic)
• minor fix -- Fix use of code:: directive #623 (@yarikoptic)

🧪 Tests

• Add 3.11 to be tested etc #635 (@yarikoptic)

Authors: 5

• Austin Macdonald (@asmacdo)
• Horea Christian (@TheChymera)
• Isaac To (@candleindark)
• Keith Callenberg (@keithcallenberg)
• Yaroslav Halchenko (@yarikoptic)

v0.11.6

🏠 Internal

• Delete .dockerignore #607 (@jwodder)

📝 Documentation

• DOC: Various fixes to make RTD build the docs again #608 (@yarikoptic)

Authors: 2

• John T. Wodder II (@jwodder)
• Yaroslav Halchenko (@yarikoptic)