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ENH: Add image slicing #550

Merged
merged 36 commits into from
Jun 2, 2018
Merged

ENH: Add image slicing #550

merged 36 commits into from
Jun 2, 2018

Commits on Jun 2, 2018

  1. ENH: Add funcs.crop_image

    @effigies
    effigies committed Jun 2, 2018
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  2. ENH: crop_image to bounds, adding margin

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  3. STY: Do not capture exception in variable

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    effigies committed Jun 2, 2018
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  4. ENH: Permit cropping with negative indices, give more specific errors

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    effigies committed Jun 2, 2018
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  5. TEST: Initial crop_image test

    @effigies
    effigies committed Jun 2, 2018
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  6. ENH: Enable SpatialImage.{slice,__getitem__}

    @effigies
    effigies committed Jun 2, 2018
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  7. ENH: Enable minimally-fancy indexing

    @effigies
    effigies committed Jun 2, 2018
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  8. RF: Move to img.slicer approach

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    effigies committed Jun 2, 2018
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  9. RF: Simplify affine transform

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    effigies committed Jun 2, 2018
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  10. REVERT fileslice modifications

    @effigies
    effigies committed Jun 2, 2018
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  11. ENH: Add SpatialImage._spatial_dims slicer

    @effigies
    effigies committed Jun 2, 2018
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  12. RF: Move slicer validation into image

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    effigies committed Jun 2, 2018
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  13. RF: Remove crop_image (for now)

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    effigies committed Jun 2, 2018
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  14. FIX: Type check, _check_slicing arguments

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    effigies committed Jun 2, 2018
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  15. ENH: Handle new axes in Minc

    @effigies
    effigies committed Jun 2, 2018
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  16. TEST: Image slicing

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    effigies committed Jun 2, 2018
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  17. Translate ValueErrors to IndexErrors when used

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    effigies committed Jun 2, 2018
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  18. TEST: Handle MGHFormat (max: 4D) correctly

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  19. TEST: Test single-element list indices

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  20. RF: All SpatialImages are makeable

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  21. TEST: Check step = 0 case

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    effigies committed Jun 2, 2018
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  22. ENH: Drop fancy indexing

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  23. TEST: Test single-slice and fancy indexing raise errors

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  24. DOC: Changelog entry

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  25. TEST: Do not use deprecated _header_data

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  26. DOC: Link to aliasing wiki article [skip ci]

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    effigies committed Jun 2, 2018
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  27. ENH: Improve exception message

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    effigies committed Jun 2, 2018
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  28. RF: Specify spatial dims in each class

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  29. TEST: Check for _spatial_dims

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  30. TEST: Minor fixes

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  31. RF: Switch to spatial_axes_first

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  32. RF/TEST: Purge _spatial_dims and related tests

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    effigies committed Jun 2, 2018
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  33. RF: Move slicing machinery to SpatialFirstSlicer class

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    effigies committed Jun 2, 2018
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  34. ENH: Raise IndexError on empty slices

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    effigies committed Jun 2, 2018
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  35. TEST: Update slice_affine test, check zero slices

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  36. DOC: Some clarifying comments in SpatialFirstSlicer

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    effigies committed Jun 2, 2018
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