From d7ccf25fe0a2f738ec9bff8769b2d7e252fd83f8 Mon Sep 17 00:00:00 2001
From: "Matthew L. Fidler" <matthew.fidler@gmail.com>
Date: Sat, 25 May 2024 20:53:03 -0500
Subject: [PATCH] fix manual

---
 R/poped.R                         |  4 ++--
 man/dot-popedGetErrorModelNone.Rd | 11 -----------
 man/popedControl.Rd               |  2 ++
 3 files changed, 4 insertions(+), 13 deletions(-)
 delete mode 100644 man/dot-popedGetErrorModelNone.Rd

diff --git a/R/poped.R b/R/poped.R
index 871dc46d..3cf07c63 100644
--- a/R/poped.R
+++ b/R/poped.R
@@ -236,7 +236,6 @@ attr(rxUiGet.popedFfFun, "desc") <- "PopED parameter model (ff_fun)"
 #' @return nothing, called for side effects
 #' @noRd
 #' @author Matthew L. Fidler
-#' @examples
 .popedRxRunFullSetupMe <- function(popedDb, xt, ms) {
   if (!rxode2::rxSolveSetup()) {
     .poped$setup <- 0L
@@ -423,7 +422,7 @@ attr(rxUiGet.popedFfFun, "desc") <- "PopED parameter model (ff_fun)"
   # Could be in the F anyway, need to check
   stop("pow() not implemented yet")
 }
-#' When the error isn't specified (probably a log-likelihood)
+# When the error isn't specified (probably a log-likelihood)
 .popedGetErrorModelNone <- function(ui, pred1) {
   stop("error model could not be interpreted as a PopED model")
 }
@@ -1455,6 +1454,7 @@ attr(rxUiGet.popedParameters, "desc") <- "PopED input $parameters"
 #'   name, for user defined distributions for E-family designs
 #' @param auto_pointer Filename and path, or function name, for the
 #'   Autocorrelation function, empty string means no autocorrelation.
+#' @param fixRes boolean; Fix the residuals to what is specified by the model
 #' @inheritParams nlmixr2est::foceiControl
 #' @inheritParams PopED::create.poped.database
 #' @inheritParams PopED::create_design_space
diff --git a/man/dot-popedGetErrorModelNone.Rd b/man/dot-popedGetErrorModelNone.Rd
deleted file mode 100644
index 9462d0b4..00000000
--- a/man/dot-popedGetErrorModelNone.Rd
+++ /dev/null
@@ -1,11 +0,0 @@
-% Generated by roxygen2: do not edit by hand
-% Please edit documentation in R/poped.R
-\name{.popedGetErrorModelNone}
-\alias{.popedGetErrorModelNone}
-\title{When the error isn't specified (probably a log-likelihood)}
-\usage{
-.popedGetErrorModelNone(ui, pred1)
-}
-\description{
-When the error isn't specified (probably a log-likelihood)
-}
diff --git a/man/popedControl.Rd b/man/popedControl.Rd
index a838ffa1..cb8f0eaf 100644
--- a/man/popedControl.Rd
+++ b/man/popedControl.Rd
@@ -520,6 +520,8 @@ Autocorrelation function, empty string means no autocorrelation.}
 \item{user_distribution_pointer}{Filename and path, or function
 name, for user defined distributions for E-family designs}
 
+\item{fixRes}{boolean; Fix the residuals to what is specified by the model}
+
 \item{...}{other parameters for PopED control}
 }
 \value{