Error : 'id' cannot have NA values

[stefanie-hennig]

Hi Matt,

I seems to get an issue when trying to read in my model run in NM.
When using:
mod5 <- nonmem2rx(paste0(mod_dir, "/run015.mod"),lst=".lst", save=FALSE)

It gets to, but then gives the error
ℹ read in nonmem ETA data (for model validation): ......\runtab004
Error : 'id' cannot have NA values

It stops here:
Error : 'id' cannot have NA values
ℹ changing most variables to lower case
ℹ done
ℹ replace theta names
ℹ done
ℹ replace eta names
ℹ done
using C compiler: 'gcc.exe (GCC) 13.3.0'

but basically loops and crashes R every time I try and read in the model.
I do not have NA is in my ID column nor IPRED or PRED etc. It runs fine in NONMEM (ADVAN2 TRANS2). It's a simple 1 CMT model with oral dosing, 3 minor covariates.
Any suggestion, where I can start to search for the issue?

Thanks
Stefanie

[billdenney]

Hi @stefanie-hennig ,

Is there a chance that you could share your .lst file and data?

[stefanie-hennig]

I thought you would ask that. Unfortunately not. But I will have a think about how to modify so that I can share and I still produce the error. There are NAs in the data, none in the id column, none in the NM output file. Cheers Stefanie

[mattfidler]

Hi @stefanie-hennig

You could also try importing it without the validation step.

 mod5 <- nonmem2rx(paste0(mod_dir, "/run015.mod"),lst=".lst", save=FALSE, validate=FALSE)

While not ideal it can work around your problem until you can figure out a reproducible example. Once the reproducible example is produced we can then fix the issue so it works in this example.

[mattfidler]

It still imports the model into rxode2, you could even simulate to see if the model performs correctly.

[stefanie-hennig]

Hi, Validate=FALSE stops the looping and reads in without the error. The plot(mod) doesnt work then. But indeed I managed to do a simulation and then plot the sims output. I will try and strip the data and model, so that I can potentially share. Not there yet. /Stefanie

…

________________________________ From: Matthew Fidler ***@***.***> Sent: Saturday, November 16, 2024 8:56 AM To: nlmixr2/nonmem2rx ***@***.***> Cc: stefanie-hennig ***@***.***>; Mention ***@***.***> Subject: Re: [nlmixr2/nonmem2rx] Error : 'id' cannot have NA values (Issue #187) It still imports the model into rxode2, you could even simulate to see if the model performs correctly. — Reply to this email directly, view it on GitHub<#187 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/A6KJQLMMZWMFB26L3ELUCQL2AZ33JAVCNFSM6AAAAABRYE4RUSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDIOBQGA4TGMBZG4>. You are receiving this because you were mentioned.Message ID: ***@***.***>