Merge pull request #147 from nmfs-fish-tools/add-additional-args-to-yaml

feat: add additional args to yaml files

.github/workflows/build-pkgdown.yml

@@ -1,36 +1,61 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
-on:
-  workflow_call:
-
-name: build-pkgdown
-
-jobs:
-  pkgdown:
-    runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-    steps:
-      - uses: actions/checkout@v4
-
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::pkgdown, local::.
-          needs: website
-
-      - name: build pkgdown
-        run: |
-          Rscript -e 'pkgdown::build_site()'
-     
-      - name: save pkgdown output
-        uses: actions/upload-artifact@v4
-        with:
-          name: pkgdown-site
-          path: docs/
-
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  workflow_call:
+    inputs:
+      additional_args_windows:
+        required: false
+        type: string
+        default: ""
+      additional_args_macos:
+        required: false
+        type: string
+        default: ""
+      additional_args_ubuntu:
+        required: false
+        type: string
+        default: ""
+
+name: build-pkgdown
+
+jobs:
+  pkgdown:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: run additional args on windows
+        if: matrix.config.os == 'windows-latest'
+        run: ${{ inputs.additional_args_windows }}
+
+      - name: run additional args on macOS
+        if: matrix.config.os == 'macOS-latest'
+        run: ${{ inputs.additional_args_macos }}
+
+      - name: run additional args on ubuntu
+        if: matrix.config.os == 'ubuntu-latest'
+        run: ${{ inputs.additional_args_ubuntu }}
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown, local::.
+          needs: website
+
+      - name: build pkgdown
+        run: |
+          Rscript -e 'pkgdown::build_site()'
+     
+      - name: save pkgdown output
+        uses: actions/upload-artifact@v4
+        with:
+          name: pkgdown-site
+          path: docs/
+

.github/workflows/call-build-pkgdown.yml

@@ -0,0 +1,15 @@
+# Checks that the pkgdown site builds for a repository.
+# this assumes pkgdown is already set up.
+name: call-build-pkgdown
+# on specifies the build triggers. See more info at https://docs.github.com/en/actions/learn-github-actions/events-that-trigger-workflows
+on:
+# this workflow runs on pushes to main or master or any time a new tag is pushed
+# it also runs everytime a pull request to main or master is opened.
+  push:
+    branches: [main, master]
+    tags: ['*']
+  pull_request:
+    branches: [main, master]
+jobs:
+  call-workflow:
+    uses: nmfs-fish-tools/ghactions4r/.github/workflows/build-pkgdown.yml@main

.github/workflows/call-r-cmd-check.yml

@@ -1,17 +1,17 @@
-# Run r cmd check
-on:
-  workflow_dispatch:
-  push:
-   paths-ignore:
-     - '.github/workflows/call**'
-  pull_request:
-    paths-ignore:
-      - '.github/workflows/call**'
-  schedule:
-    # This should run the default branch weekly on sunday
-    - cron: '0 0 * * 0'
-name: call-r-cmd-check
-
-jobs:
-  call-workflow:
-    uses: nmfs-fish-tools/ghactions4r/.github/workflows/r-cmd-check.yml@main
+# Run r cmd check
+on:
+  workflow_dispatch:
+  push:
+   paths-ignore:
+     - '.github/workflows/call**'
+  pull_request:
+    paths-ignore:
+      - '.github/workflows/call**'
+  schedule:
+    # This should run the default branch weekly on sunday
+    - cron: '0 0 * * 0'
+name: call-r-cmd-check
+
+jobs:
+  call-workflow:
+    uses: nmfs-fish-tools/ghactions4r/.github/workflows/r-cmd-check.yml@main

.github/workflows/call-update-pkgdown.yml

@@ -1,13 +1,13 @@
-# updates exiting pkgdown site for a repository
-# deploys to a branch gh-pages
-name: call-update-pkgdown
-# on specifies the build triggers. See more info at https://docs.github.com/en/actions/learn-github-actions/events-that-trigger-workflows
-on:
-# this workflow runs on pushes to main or master or any time a new tag is pushed
-  workflow_dispatch:
-  push:
-    branches: [main, master]
-    tags: ['*']
-jobs:
-  call-workflow:
-    uses: nmfs-fish-tools/ghactions4r/.github/workflows/update-pkgdown.yml@main
+# updates exiting pkgdown site for a repository
+# deploys to a branch gh-pages
+name: call-update-pkgdown
+# on specifies the build triggers. See more info at https://docs.github.com/en/actions/learn-github-actions/events-that-trigger-workflows
+on:
+# this workflow runs on pushes to main or master or any time a new tag is pushed
+  workflow_dispatch:
+  push:
+    branches: [main, master]
+    tags: ['*']
+jobs:
+  call-workflow:
+    uses: nmfs-fish-tools/ghactions4r/.github/workflows/update-pkgdown.yml@main