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Issue #254
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e-perl-NOAA committed Oct 15, 2024
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2 changes: 1 addition & 1 deletion 8data.tex
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Expand Up @@ -431,7 +431,7 @@
\end{itemize}
\item Warning: the depletion survey approach has not been tested on multiple area models. This approach may present challenges depending upon the dynamics within each area.
\end{itemize}
\item 35 = survey of a deviation vector ($e(survey(y)) = f(parm\_dev(k,y))$), can be used for an environmental time series with soft linkage to the index. The selected deviation vector is specified in Q section of the control file. The index of the deviation vector to which the index is related is specified in the 2nd column of the Q setup table (see \hyperlink{Qsetup}{Catchability});
\item 35 = survey of a deviation vector ($e(survey(y)) = f(parm\_dev(k,y))$), can be used for an environmental time series with soft linkage to the index. The selected deviation vector is specified in Q section of the control file. The index of the deviation vector to which the index is related is specified in the 3rd column of the Q setup table (see \hyperlink{Qsetup}{Catchability});
\item 36 = recruitment deviation
\end{itemize}
\end{itemize}
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4 changes: 2 additions & 2 deletions 9control.tex
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Expand Up @@ -1542,10 +1542,10 @@ \subsubsection{Predator Fleet Mortality}
\item 5 = offset (2 parameter lines required). This option, new with v.3.30.23, requires a second parameter that is added to the expected values before multiplying Q. This is most useful for survey types 35 and 36, even if those survey input vectors have already been zero centered. $y=Q*(x+B)$
\item 6 = offset and power (3 parameter lines required). This requires 2 parameters in addition to the Q parameter. The first is for the offset and the second is for the power, $y=Q*(x+b)^{(1+c)}$.
\end{enumerate}
\item \hypertarget{link_info}{Extra input for link information (i.e., mirror fleet)}
\item \hypertarget{link_info}{Extra input for link information (i.e., mirror fleet or dev index number)}
\begin{enumerate}[(a)]
\item > 0 = mirror the Q from another (lower numbered survey designated by referencing the fleet number).
\item If the parameter is for an index of a deviation vector (index units = 35), use this column to enter the index of the deviation vector to which the index is related.
\item If an index of a deviation vector , option 35, use this column to enter the index of the deviation vector to which the index is related. For example, if only using one index in your model, this number would be 1.
\item If a depletion survey, option 34, approach is being applied the following values in this column determines how phases are adjusted:
\begin{itemize}
\item 0 = add 1 to phases of all parameters. Only $R_{0}$ active in new phase 1. Mimics the default option of previous model versions;
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