diff --git a/6starter.tex b/6starter.tex index f645e641..1b76c422 100644 --- a/6starter.tex +++ b/6starter.tex @@ -106,8 +106,8 @@ \subsection{Starter File Options (starter.ss)} & 1 = output an annotated replicate of the input data file; & \Tstrut\Bstrut\\ & 2 = add a second data file containing the model's expected values with no added error. ; and & \Tstrut\Bstrut\\ & 3+ = add N-2 parametric bootstrap data files. & \Tstrut\\ - & & \\ - & & \\ + & & \Bstrut\\ + % & & \\ \hline %\pagebreak @@ -156,7 +156,6 @@ \subsection{Starter File Options (starter.ss)} %\hline \multicolumn{1}{r}{1940 1950} & \multirow{1}{1cm}[-0.25cm]{\parbox{19.5cm}{Vector of years for additional SD reporting. The number of years need to equal the value specified in the above line (Extra SD Reporting).}} \Tstrut\\ & & \\ - \hline 0.0001 & Final convergence & \multirow{1}{1cm}[-0.25cm]{\parbox{12.5cm}{This is a reasonable default value for the change in log likelihood denoting convergence. For applications with much data and thus a large total log likelihood value, a larger convergence criterion may still provide acceptable convergence}} \Tstrut\Bstrut\\ @@ -173,8 +172,8 @@ \subsection{Starter File Options (starter.ss)} 0 & Summary biomass min age & \multirow{1}{1cm}[-0.25cm]{\parbox{12.5cm}{Minimum integer age for inclusion in the summary biomass used for reporting and for calculation of total exploitation rate.}} \Tstrut\\ & & \\ - %\hline - \pagebreak + \hline +% \pagebreak 1 & Depletion basis: & \multirow{1}{1cm}[-0.25cm]{\parbox{12.5cm}{Selects the basis for the denominator when calculating degree of depletion in SB. The calculated values are reported to the SD report.}} \Tstrut\\ & 0 = skip; & \\ & 1 = X*SB0; & Relative to virgin spawning biomass. \\ diff --git a/7forecast.tex b/7forecast.tex index cc324c5f..d67ce79f 100644 --- a/7forecast.tex +++ b/7forecast.tex @@ -109,8 +109,8 @@ \subsection{Forecast File Options (forecast.ss)} 1 & F scalar/multiplier & \multirow{1}{1cm}[-0.15cm]{\parbox{12cm}{Only used if Forecast option = 5 (input annual F scalar), but is a required line in the forecast file.}} \Tstrut\\ & & \\ - % \pagebreak - \hline + \pagebreak + % \hline \multicolumn{3}{l}{There are 2 options for entering \hypertarget{FcastYears}{Forecast Years}:} \Tstrut\\ Option 1: & \multicolumn{2}{l}{\multirow{1}{1cm}[-0.15cm]{\parbox{18.5cm}{This approach for forecast year ranges is no longer recommended because blocks, random effects, and other time-varying parameter changes can now operate on forecast years and the new approach provides better control averaging.}}} \Tstrut\Bstrut\\ @@ -121,7 +121,7 @@ \subsection{Forecast File Options (forecast.ss)} & & \Bstrut\\ & & \Tstrut\Bstrut\\ - \pagebreak + % \pagebreak & & -- Relative F for bycatch only fleets is scaled just like other fleets.\Tstrut\\ & & \multirow{1}{1cm}[-0.15cm]{\parbox{12cm}{-- For selectivity averaging with the new approach the method code is ``1'', whereas with the old Forecast Selectivity Option, the code was ``1'' for using time-varying parameters. SS3 accounts for this change internally.}} \Bstrut\\ & & \\ @@ -304,8 +304,8 @@ \subsection{Forecast File Options (forecast.ss)} \multicolumn{1}{r}{2002 1} & Allocation to each group for each year of the forecast & \\ \multicolumn{1}{r}{-9999 1} & & \Bstrut\\ - %\hline - \pagebreak + \hline + % \pagebreak -1 & Basis for forecast catch: & \multirow{1}{1cm}[-0.25cm]{\parbox{12cm}{The dead or retained value in the forecast catch inputs will be interpreted in terms of numbers or biomass based on the units of the input catch for each fleet.}} \Tstrut\\ & -1 = Read basis with each observation, allows for a mixture of dead, retained, or F basis by different fleets for the fixed catches below; & \\ & 2 = Dead catch (retained + discarded); & \\