test-models-mac-14.yml

name: update-ss3-test-models-mac
on: 
  push:

jobs:
  update-ss3-test-models-mac:
    runs-on: macos-12
    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      R_KEEP_PKG_SOURCE: yes

    steps:

      - name: Checkout repo
        uses: actions/checkout@v4

      - name: setup R  
        uses: r-lib/actions/setup-r@v2
      
      - name: install remotes
        run: Rscript -e 'install.packages("remotes")'

      - name: install r4ss
        run: Rscript -e 'remotes::install_github("r4ss/r4ss")'

      - name: install other r packages
        run: Rscript -e 'install.packages(c("purrr","furrr","parallely","future"))'

      - name: Get the latest SS3 executable
        run: |
          wget https://api.github.com/repos/nmfs-ost/ss3-source-code/actions/artifacts/1409298598
          sudo unzip ss3-macos-13.zip
          mv ss3_osx ss3
          sudo chmod a+x ss3
          mv ss3 models/ss3

      - name: Run models
        run: |
          mod_names <- list.dirs(file.path("models"), full.names = FALSE, recursive = FALSE)
          mod_paths <- list.dirs(file.path("models"), full.names = TRUE, recursive = FALSE)
          print(mod_names)

          ncores <- parallelly::availableCores(omit = 1)
          future::plan(future::multisession, workers = ncores)

          mod_ran <- furrr::future_map(mod_paths, function(x){r4ss::run(dir = x, exe = "/Users/runner/work/ss3-test-models/ss3-test-models/models/ss3", verbose = TRUE)})
          
          print(mod_ran)
        shell: Rscript {0}