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@sosiristseng
sosiristseng committed Apr 18, 2024
1 parent 47434b8 commit 84e3140
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Showing 2 changed files with 123 additions and 8 deletions.
130 changes: 122 additions & 8 deletions Manifest.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

julia_version = "1.10.2"
manifest_format = "2.0"
project_hash = "3fd12a0d405f72f09d05cfc9a83e4272c4f69f1a"
project_hash = "02c25b413fc86ba2f08930a920126797f76c8327"

[[deps.ADTypes]]
git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24"
Expand Down Expand Up @@ -94,6 +94,16 @@ weakdeps = ["SparseArrays"]
[[deps.Artifacts]]
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"

[[deps.BandedMatrices]]
deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
git-tree-sha1 = "c946c5014cf4cdbfacacb363b110e7bffba3e742"
uuid = "aae01518-5342-5314-be14-df237901396f"
version = "1.6.1"
weakdeps = ["SparseArrays"]

[deps.BandedMatrices.extensions]
BandedMatricesSparseArraysExt = "SparseArrays"

[[deps.Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"

Expand All @@ -113,12 +123,29 @@ git-tree-sha1 = "0c5f81f47bbbcf4aea7b2959135713459170798b"
uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b"
version = "0.1.5"

[[deps.BoundaryValueDiffEq]]
deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools"]
git-tree-sha1 = "005b55fa2eebaa4d7bf3cfb8097807f47116175f"
uuid = "764a87c0-6b3e-53db-9096-fe964310641d"
version = "5.7.1"

[deps.BoundaryValueDiffEq.extensions]
BoundaryValueDiffEqODEInterfaceExt = "ODEInterface"

[deps.BoundaryValueDiffEq.weakdeps]
ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c"

[[deps.Bzip2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "9e2a6b69137e6969bab0152632dcb3bc108c8bdd"
uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
version = "1.0.8+1"

[[deps.CEnum]]
git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
version = "0.5.0"

[[deps.CPUSummary]]
deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
git-tree-sha1 = "601f7e7b3d36f18790e2caf83a882d88e9b71ff1"
Expand Down Expand Up @@ -314,6 +341,12 @@ version = "1.0.0"
deps = ["Printf"]
uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"

[[deps.DelayDiffEq]]
deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"]
git-tree-sha1 = "bfae672496149b369172eae6296290a381df2bdf"
uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb"
version = "5.47.1"

[[deps.DelimitedFiles]]
deps = ["Mmap"]
git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae"
Expand Down Expand Up @@ -355,10 +388,19 @@ deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebr
git-tree-sha1 = "ee954c8b9d348b7a8a6aec5f28288bf5adecd4ee"
uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
version = "2.37.0"
weakdeps = ["OrdinaryDiffEq", "Sundials"]

[deps.DiffEqCallbacks.weakdeps]
OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4"
[[deps.DiffEqNoiseProcess]]
deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "Requires", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"]
git-tree-sha1 = "65cbbe1450ced323b4b17228ccd96349d96795a7"
uuid = "77a26b50-5914-5dd7-bc55-306e6241c503"
version = "5.21.0"

[deps.DiffEqNoiseProcess.extensions]
DiffEqNoiseProcessReverseDiffExt = "ReverseDiff"

[deps.DiffEqNoiseProcess.weakdeps]
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"

[[deps.DiffResults]]
deps = ["StaticArraysCore"]
Expand All @@ -372,6 +414,12 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272"
uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
version = "1.15.1"

[[deps.DifferentialEquations]]
deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"]
git-tree-sha1 = "81042254a307980b8ab5b67033aca26c2e157ebb"
uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
version = "7.13.0"

[[deps.Distances]]
deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
git-tree-sha1 = "66c4c81f259586e8f002eacebc177e1fb06363b0"
Expand Down Expand Up @@ -487,6 +535,12 @@ git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e"
uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5"
version = "4.4.4+1"

[[deps.FastAlmostBandedMatrices]]
deps = ["ArrayInterface", "ArrayLayouts", "BandedMatrices", "ConcreteStructs", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "PrecompileTools", "Reexport"]
git-tree-sha1 = "9dc913faf8552fd09b92a0d7fcc25f1d5609d795"
uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e"
version = "0.1.1"

[[deps.FastBroadcast]]
deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"]
git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136"
Expand Down Expand Up @@ -860,6 +914,12 @@ weakdeps = ["StaticArrays"]
deps = ["Artifacts", "Pkg"]
uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"

[[deps.LevyArea]]
deps = ["LinearAlgebra", "Random", "SpecialFunctions"]
git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec"
uuid = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637"
version = "1.0.0"

[[deps.LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
Expand Down Expand Up @@ -1211,6 +1271,18 @@ git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1"
uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e"
version = "0.5.5+0"

[[deps.Optim]]
deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"]
git-tree-sha1 = "d9b79c4eed437421ac4285148fcadf42e0700e89"
uuid = "429524aa-4258-5aef-a3af-852621145aeb"
version = "1.9.4"

[deps.Optim.extensions]
OptimMOIExt = "MathOptInterface"

[deps.Optim.weakdeps]
MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee"

[[deps.Opus_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720"
Expand Down Expand Up @@ -1313,21 +1385,27 @@ version = "0.4.4"

[[deps.Polyester]]
deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"]
git-tree-sha1 = "2ba5f33cbb51a85ef58a850749492b08f9bf2193"
git-tree-sha1 = "09f59c6dda37c7f73efddc5bdf6f92bc940eb484"
uuid = "f517fe37-dbe3-4b94-8317-1923a5111588"
version = "0.7.13"
version = "0.7.12"

[[deps.PolyesterWeave]]
deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"]
git-tree-sha1 = "240d7170f5ffdb285f9427b92333c3463bf65bf6"
uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad"
version = "0.2.1"

[[deps.PositiveFactorizations]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20"
uuid = "85a6dd25-e78a-55b7-8502-1745935b8125"
version = "0.2.4"

[[deps.PreallocationTools]]
deps = ["Adapt", "ArrayInterface", "ForwardDiff"]
git-tree-sha1 = "a660e9daab5db07adf3dedfe09b435cc530d855e"
git-tree-sha1 = "b6665214f2d0739f2d09a17474dd443b9139784a"
uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46"
version = "0.4.21"
version = "0.4.20"

[deps.PreallocationTools.extensions]
PreallocationToolsReverseDiffExt = "ReverseDiff"
Expand Down Expand Up @@ -1371,6 +1449,12 @@ uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
deps = ["SHA"]
uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"

[[deps.Random123]]
deps = ["Random", "RandomNumbers"]
git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7"
uuid = "74087812-796a-5b5d-8853-05524746bad3"
version = "1.7.0"

[[deps.RandomNumbers]]
deps = ["Random", "Requires"]
git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111"
Expand Down Expand Up @@ -1436,6 +1520,12 @@ git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7"
uuid = "ae029012-a4dd-5104-9daa-d747884805df"
version = "1.3.0"

[[deps.ResettableStacks]]
deps = ["StaticArrays"]
git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9"
uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b"
version = "1.1.1"

[[deps.Rmath]]
deps = ["Random", "Rmath_jll"]
git-tree-sha1 = "f65dcb5fa46aee0cf9ed6274ccbd597adc49aa7b"
Expand Down Expand Up @@ -1679,6 +1769,18 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"]
StatsFunsChainRulesCoreExt = "ChainRulesCore"
StatsFunsInverseFunctionsExt = "InverseFunctions"

[[deps.SteadyStateDiffEq]]
deps = ["ConcreteStructs", "DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "Reexport", "SciMLBase"]
git-tree-sha1 = "a735fd5053724cf4de31c81b4e2cc429db844be5"
uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f"
version = "2.0.1"

[[deps.StochasticDiffEq]]
deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"]
git-tree-sha1 = "97e5d0b7e5ec2e68eec6626af97c59e9f6b6c3d0"
uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0"
version = "6.65.1"

[[deps.StrideArraysCore]]
deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"]
git-tree-sha1 = "b518da45c50dfab8384125ba829f1739bda41034"
Expand All @@ -1694,6 +1796,18 @@ deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]
uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
version = "7.2.1+1"

[[deps.Sundials]]
deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"]
git-tree-sha1 = "e15f5a73f0d14b9079b807a9d1dac13e4302e997"
uuid = "c3572dad-4567-51f8-b174-8c6c989267f4"
version = "4.24.0"

[[deps.Sundials_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "SuiteSparse_jll", "libblastrampoline_jll"]
git-tree-sha1 = "ba4d38faeb62de7ef47155ed321dce40a549c305"
uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164"
version = "5.2.2+0"

[[deps.SymbolicIndexingInterface]]
deps = ["Accessors", "ArrayInterface", "MacroTools", "RuntimeGeneratedFunctions", "StaticArraysCore"]
git-tree-sha1 = "40ea524431a92328cd73582d1820a5b08247a40f"
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1 change: 1 addition & 0 deletions Project.toml
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Original file line number Diff line number Diff line change
Expand Up @@ -7,6 +7,7 @@ version = "0.1.0"
Catalyst = "479239e8-5488-4da2-87a7-35f2df7eef83"
DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def"
DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78"
OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"

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