From dbdeb2746d505af9c197007a6c872889a1a79aa5 Mon Sep 17 00:00:00 2001
From: Wen Wei Tseng <sosiristseng@gmail.com>
Date: Sun, 8 Dec 2024 16:07:41 +0800
Subject: [PATCH] rm notebook

---
 pluto-nb/units.jl | 198 ----------------------------------------------
 1 file changed, 198 deletions(-)
 delete mode 100644 pluto-nb/units.jl

diff --git a/pluto-nb/units.jl b/pluto-nb/units.jl
deleted file mode 100644
index 06450f8..0000000
--- a/pluto-nb/units.jl
+++ /dev/null
@@ -1,198 +0,0 @@
-### A Pluto.jl notebook ###
-# v0.20.3
-
-using Markdown
-using InteractiveUtils
-
-# ╔═╡ 34de6de0-b14c-11ef-3c48-a3452d7d7f85
-md"""
-# Common units
-
-For electrophysiology models
-
-- time as millisecond (ms)
-- concentration as micromolar (μM)
-- voltage as millivolt (mV)
-- amount of substance as millimolar (mmol)
-- current density as μA/μF
-
-Thus, 
-
-- Faraday constant = 96.485 columb / mmol
-- Length unit = **meter (m)** since μM = mmol * $m^{-3}$
-- Current density = μA/μF = mV/ms
-"""
-
-# ╔═╡ 69259624-2f29-4828-9fb1-f8bf5e9997af
-second = 10^3
-
-# ╔═╡ 4cdf9934-bc30-4456-a06b-76ed19a2ba0f
-mol = 1000
-
-# ╔═╡ c74d07d7-ae92-4970-8cf5-6f49155e8e07
-metre = 1
-
-# ╔═╡ e70930d7-b131-40d3-9d3e-c5448ef96cd3
-Ampere = 1
-
-# ╔═╡ 93b7ce14-dd13-4a54-8cac-df854406013b
-Joule = 10^6
-
-# ╔═╡ e267f81e-6878-4dd4-8d43-d096a7b7293e
-Kelvin = 1
-
-# ╔═╡ 600921d1-9338-48a5-8c11-486cf14836f4
-ms = second/10^3
-
-# ╔═╡ 82854a56-9131-4525-9986-cd0cac3869b5
-Hz = inv(second)
-
-# ╔═╡ a77a1d2f-968f-4557-a132-a2489d78feb5
-mmol = mol/10^3
-
-# ╔═╡ f29a4041-f2f3-4bbb-bb90-eb3ff5ab6124
-μM = mmol/metre^3
-
-# ╔═╡ c64a8b61-3f23-45c9-8e4a-77f603c3d0e6
-@show μM/ms
-
-# ╔═╡ 197e0bf3-3856-422a-87da-c4a0b1d36dfa
-Columb = Ampere * second
-
-# ╔═╡ e9b68a96-cf94-4dee-b1d6-0ceae87209ab
-Volt = Joule / Columb
-
-# ╔═╡ 25c59861-7469-4f5f-838d-c2f137841d34
-mV = Volt/10^3
-
-# ╔═╡ 6ed5c1ec-f7e5-4111-8a80-2ce567d9a7a5
-@show mV/ms
-
-# ╔═╡ 7e46345b-8af8-4d9e-9951-e0132f0995e9
-# J / mol·K
-R = 8.314Joule/Kelvin/mol
-
-# ╔═╡ 627b72f4-4fbb-41bc-a32f-aafed6d84563
-μA = Ampere / 10^6
-
-# ╔═╡ 3c566405-7cd7-4e44-8b27-3b833352d495
-Farad = Columb / Volt
-
-# ╔═╡ 1d5c936e-b424-4377-b41d-f4059acadcb9
-μF = Farad/10^6
-
-# ╔═╡ a6b5e066-e737-45bb-af18-e40b76e7b7fc
-# Current density
-@show μA/μF
-
-# ╔═╡ 9b01cb43-6da7-42ac-afe5-ecce0c986003
-Faraday = 96485 * Columb / mol
-
-# ╔═╡ 2fda1066-de1e-435c-bd2d-a4ff66818bcf
-Temp = 310Kelvin
-
-# ╔═╡ 5f2f7bcc-c2d4-4b5a-b021-dc9504ace92a
-# Thermal voltage (mV)
-vt = R * Temp / Faraday
-
-# ╔═╡ 4e12a340-4700-428f-b23e-5d954b4a6994
-Siemens = Ampere/Volt
-
-# ╔═╡ 90544cd6-d305-4d80-b8c8-4efe29b35896
-# Conductance
-mS_μF = Siemens / 10^3 / (Farad / 10^6)
-
-# ╔═╡ 27faf21d-fab3-4259-9677-7da769d3e2c7
-mm = 1e-3metre
-
-# ╔═╡ fa990df3-d2c1-4797-9416-b755de09b51b
-cm = 0.01metre
-
-# ╔═╡ 5b45cfdd-2a49-45ad-b1a5-2698c573f4bb
-μm = 1e-6metre
-
-# ╔═╡ 40dc4501-5771-4977-9922-eadcffd6e7e8
-litre = 1000cm^3
-
-# ╔═╡ c758f8ef-c68a-49c6-8d21-993b90b079d6
-# picoliter
-pL = 1e-12litre
-
-# ╔═╡ 3295ec28-e23c-4f7c-aa9f-e5868824f121
-cm² = cm^2
-
-# ╔═╡ 5a156633-4635-4b4f-8456-e0764db626dc
-@show μA/cm² μF/cm² 
-
-# ╔═╡ bdd32a87-a075-4b81-803a-6787e8834678
-md"""
-Conversion factor between current and flux
-
-$\frac{A_{cap} * C_m}{z * Vol * F}$
-
-Volume should be mm^3 (or μL) to match SI unit?
-"""
-
-# ╔═╡ ebee4c1f-4b0a-4b7c-a30b-e3284b95b965
-(cm² * μF/cm²) / (10^(-9) * metre^3 * Columb / mmol)
-
-# ╔═╡ c5972a01-aa29-41de-9309-8568f0eef314
-rSL_true = 10.5μm
-
-# ╔═╡ c240c987-50e2-41a7-8a62-7e6b135d41cc
-rSR_true = 6μm
-
-# ╔═╡ dccd732a-8fcf-4711-ab88-e69c873c198d
-Acap = 4π * rSL_true^2
-
-# ╔═╡ 6c054eb3-91a7-4553-96ac-3893420014d8
-Cm = 1μF / cm²
-
-# ╔═╡ 79f70c73-81f6-42e6-ae05-1d99dda07962
-Vmyo = 4 / 3 * π * (rSL_true^3 - rSR_true^3)
-
-# ╔═╡ 0a58a619-cfae-41e6-81fa-7a4f627dd26a
-Acap * Cm / Vmyo / Faraday
-
-# ╔═╡ Cell order:
-# ╠═34de6de0-b14c-11ef-3c48-a3452d7d7f85
-# ╠═69259624-2f29-4828-9fb1-f8bf5e9997af
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-# ╠═e70930d7-b131-40d3-9d3e-c5448ef96cd3
-# ╠═93b7ce14-dd13-4a54-8cac-df854406013b
-# ╠═e267f81e-6878-4dd4-8d43-d096a7b7293e
-# ╠═600921d1-9338-48a5-8c11-486cf14836f4
-# ╠═82854a56-9131-4525-9986-cd0cac3869b5
-# ╠═a77a1d2f-968f-4557-a132-a2489d78feb5
-# ╠═f29a4041-f2f3-4bbb-bb90-eb3ff5ab6124
-# ╠═c64a8b61-3f23-45c9-8e4a-77f603c3d0e6
-# ╠═197e0bf3-3856-422a-87da-c4a0b1d36dfa
-# ╠═e9b68a96-cf94-4dee-b1d6-0ceae87209ab
-# ╠═25c59861-7469-4f5f-838d-c2f137841d34
-# ╠═6ed5c1ec-f7e5-4111-8a80-2ce567d9a7a5
-# ╠═7e46345b-8af8-4d9e-9951-e0132f0995e9
-# ╠═627b72f4-4fbb-41bc-a32f-aafed6d84563
-# ╠═3c566405-7cd7-4e44-8b27-3b833352d495
-# ╠═1d5c936e-b424-4377-b41d-f4059acadcb9
-# ╠═a6b5e066-e737-45bb-af18-e40b76e7b7fc
-# ╠═9b01cb43-6da7-42ac-afe5-ecce0c986003
-# ╠═2fda1066-de1e-435c-bd2d-a4ff66818bcf
-# ╠═5f2f7bcc-c2d4-4b5a-b021-dc9504ace92a
-# ╠═4e12a340-4700-428f-b23e-5d954b4a6994
-# ╠═90544cd6-d305-4d80-b8c8-4efe29b35896
-# ╠═27faf21d-fab3-4259-9677-7da769d3e2c7
-# ╠═fa990df3-d2c1-4797-9416-b755de09b51b
-# ╠═5b45cfdd-2a49-45ad-b1a5-2698c573f4bb
-# ╠═40dc4501-5771-4977-9922-eadcffd6e7e8
-# ╠═c758f8ef-c68a-49c6-8d21-993b90b079d6
-# ╠═3295ec28-e23c-4f7c-aa9f-e5868824f121
-# ╠═5a156633-4635-4b4f-8456-e0764db626dc
-# ╠═bdd32a87-a075-4b81-803a-6787e8834678
-# ╠═ebee4c1f-4b0a-4b7c-a30b-e3284b95b965
-# ╠═c5972a01-aa29-41de-9309-8568f0eef314
-# ╠═c240c987-50e2-41a7-8a62-7e6b135d41cc
-# ╠═dccd732a-8fcf-4711-ab88-e69c873c198d
-# ╠═6c054eb3-91a7-4553-96ac-3893420014d8
-# ╠═79f70c73-81f6-42e6-ae05-1d99dda07962
-# ╠═0a58a619-cfae-41e6-81fa-7a4f627dd26a