From 494b0b6e648efbdee1ecf6b57a494d18a3a88b7c Mon Sep 17 00:00:00 2001
From: sosiristseng <40054455+sosiristseng@users.noreply.github.com>
Date: Tue, 29 Oct 2024 12:41:34 +0000
Subject: [PATCH 1/2] [create-pull-request] automated change

---
 Manifest.toml | 68 ++++++++++++---------------------------------------
 1 file changed, 16 insertions(+), 52 deletions(-)

diff --git a/Manifest.toml b/Manifest.toml
index 2ee0920..219fe34 100644
--- a/Manifest.toml
+++ b/Manifest.toml
@@ -1,8 +1,8 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.11.1"
+julia_version = "1.10.6"
 manifest_format = "2.0"
-project_hash = "920e0f58b8de79cee00837b26995baaea8af4667"
+project_hash = "08bb207b2259d76ebc2f871543cec53a6adea0b8"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081"
@@ -62,7 +62,7 @@ version = "1.1.3"
 
 [[deps.ArgTools]]
 uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
-version = "1.1.2"
+version = "1.1.1"
 
 [[deps.ArnoldiMethod]]
 deps = ["LinearAlgebra", "Random", "StaticArrays"]
@@ -112,11 +112,9 @@ weakdeps = ["SparseArrays"]
 
 [[deps.Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
-version = "1.11.0"
 
 [[deps.Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
-version = "1.11.0"
 
 [[deps.Bijections]]
 git-tree-sha1 = "d8b0439d2be438a5f2cd68ec158fe08a7b2595b7"
@@ -345,7 +343,6 @@ version = "1.0.0"
 [[deps.Dates]]
 deps = ["Printf"]
 uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
-version = "1.11.0"
 
 [[deps.Dbus_jll]]
 deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"]
@@ -479,7 +476,6 @@ weakdeps = ["ChainRulesCore", "EnzymeCore"]
 [[deps.Distributed]]
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
-version = "1.11.0"
 
 [[deps.Distributions]]
 deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"]
@@ -656,7 +652,6 @@ weakdeps = ["Mmap", "Test"]
 
 [[deps.FileWatching]]
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
-version = "1.11.0"
 
 [[deps.FillArrays]]
 deps = ["LinearAlgebra"]
@@ -752,7 +747,6 @@ version = "0.4.12"
 [[deps.Future]]
 deps = ["Random"]
 uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820"
-version = "1.11.0"
 
 [[deps.GLFW_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"]
@@ -885,7 +879,6 @@ version = "2024.2.1+0"
 [[deps.InteractiveUtils]]
 deps = ["Markdown"]
 uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240"
-version = "1.11.0"
 
 [[deps.IntervalSets]]
 git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0"
@@ -1044,7 +1037,6 @@ version = "2.2.1"
 [[deps.LazyArtifacts]]
 deps = ["Artifacts", "Pkg"]
 uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
-version = "1.11.0"
 
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
@@ -1054,17 +1046,16 @@ version = "0.6.4"
 [[deps.LibCURL_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
 uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
-version = "8.6.0+0"
+version = "8.4.0+0"
 
 [[deps.LibGit2]]
 deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"]
 uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
-version = "1.11.0"
 
 [[deps.LibGit2_jll]]
 deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"]
 uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5"
-version = "1.7.2+0"
+version = "1.6.4+0"
 
 [[deps.LibSSH2_jll]]
 deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
@@ -1073,7 +1064,6 @@ version = "1.11.0+1"
 
 [[deps.Libdl]]
 uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
-version = "1.11.0"
 
 [[deps.Libffi_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -1142,7 +1132,6 @@ version = "7.3.0"
 [[deps.LinearAlgebra]]
 deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"]
 uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-version = "1.11.0"
 
 [[deps.LinearSolve]]
 deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"]
@@ -1198,7 +1187,6 @@ version = "0.3.28"
 
 [[deps.Logging]]
 uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
-version = "1.11.0"
 
 [[deps.LoggingExtras]]
 deps = ["Dates", "Logging"]
@@ -1248,7 +1236,6 @@ version = "0.1.8"
 [[deps.Markdown]]
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
-version = "1.11.0"
 
 [[deps.MaybeInplace]]
 deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"]
@@ -1269,7 +1256,7 @@ version = "1.1.9"
 [[deps.MbedTLS_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
-version = "2.28.6+0"
+version = "2.28.2+1"
 
 [[deps.Measures]]
 git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102"
@@ -1284,7 +1271,6 @@ version = "1.2.0"
 
 [[deps.Mmap]]
 uuid = "a63ad114-7e13-5084-954f-fe012c677804"
-version = "1.11.0"
 
 [[deps.ModelingToolkit]]
 deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"]
@@ -1308,7 +1294,7 @@ version = "9.49.0"
 
 [[deps.MozillaCACerts_jll]]
 uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
-version = "2023.12.12"
+version = "2023.1.10"
 
 [[deps.MuladdMacro]]
 git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab"
@@ -1389,7 +1375,7 @@ version = "1.3.5+1"
 [[deps.OpenBLAS_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"]
 uuid = "4536629a-c528-5b80-bd46-f80d51c5b363"
-version = "0.3.27+1"
+version = "0.3.23+4"
 
 [[deps.OpenLibm_jll]]
 deps = ["Artifacts", "Libdl"]
@@ -1674,13 +1660,9 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc"
 version = "0.43.4+0"
 
 [[deps.Pkg]]
-deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"]
+deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
 uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
-version = "1.11.0"
-weakdeps = ["REPL"]
-
-    [deps.Pkg.extensions]
-    REPLExt = "REPL"
+version = "1.10.0"
 
 [[deps.PlotThemes]]
 deps = ["PlotUtils", "Statistics"]
@@ -1801,7 +1783,6 @@ version = "0.5.6"
 [[deps.Printf]]
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
-version = "1.11.0"
 
 [[deps.ProgressLogging]]
 deps = ["Logging", "SHA", "UUIDs"]
@@ -1851,14 +1832,12 @@ version = "2.11.1"
     Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
 
 [[deps.REPL]]
-deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"]
+deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
 uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
-version = "1.11.0"
 
 [[deps.Random]]
 deps = ["SHA"]
 uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
-version = "1.11.0"
 
 [[deps.Random123]]
 deps = ["Random", "RandomNumbers"]
@@ -2044,7 +2023,6 @@ version = "1.4.6"
 
 [[deps.Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
-version = "1.11.0"
 
 [[deps.Setfield]]
 deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"]
@@ -2055,7 +2033,6 @@ version = "1.1.1"
 [[deps.SharedArrays]]
 deps = ["Distributed", "Mmap", "Random", "Serialization"]
 uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
-version = "1.11.0"
 
 [[deps.Showoff]]
 deps = ["Dates", "Grisu"]
@@ -2099,7 +2076,6 @@ version = "1.1.0"
 
 [[deps.Sockets]]
 uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
-version = "1.11.0"
 
 [[deps.SortingAlgorithms]]
 deps = ["DataStructures"]
@@ -2110,7 +2086,7 @@ version = "1.2.1"
 [[deps.SparseArrays]]
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
 uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
-version = "1.11.0"
+version = "1.10.0"
 
 [[deps.SparseConnectivityTracer]]
 deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"]
@@ -2218,14 +2194,9 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c"
 version = "1.4.3"
 
 [[deps.Statistics]]
-deps = ["LinearAlgebra"]
-git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0"
+deps = ["LinearAlgebra", "SparseArrays"]
 uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
-version = "1.11.1"
-weakdeps = ["SparseArrays"]
-
-    [deps.Statistics.extensions]
-    SparseArraysExt = ["SparseArrays"]
+version = "1.10.0"
 
 [[deps.StatsAPI]]
 deps = ["LinearAlgebra"]
@@ -2262,10 +2233,6 @@ git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3"
 uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e"
 version = "0.4.0"
 
-[[deps.StyledStrings]]
-uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b"
-version = "1.11.0"
-
 [[deps.SuiteSparse]]
 deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"]
 uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
@@ -2273,7 +2240,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9"
 [[deps.SuiteSparse_jll]]
 deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]
 uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
-version = "7.7.0+0"
+version = "7.2.1+1"
 
 [[deps.SymbolicIndexingInterface]]
 deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"]
@@ -2359,7 +2326,6 @@ version = "2.0.0"
 [[deps.Test]]
 deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
-version = "1.11.0"
 
 [[deps.TestItems]]
 git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb"
@@ -2413,7 +2379,6 @@ version = "1.5.1"
 [[deps.UUIDs]]
 deps = ["Random", "SHA"]
 uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4"
-version = "1.11.0"
 
 [[deps.UnPack]]
 git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b"
@@ -2422,7 +2387,6 @@ version = "1.0.2"
 
 [[deps.Unicode]]
 uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5"
-version = "1.11.0"
 
 [[deps.UnicodeFun]]
 deps = ["REPL"]
@@ -2752,7 +2716,7 @@ version = "1.1.6+0"
 [[deps.nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
-version = "1.59.0+0"
+version = "1.52.0+1"
 
 [[deps.oneTBB_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]

From cab519c02b82108cfd0e122f2c502926895e4b58 Mon Sep 17 00:00:00 2001
From: Wen Wei Tseng <sosiristseng@gmail.com>
Date: Tue, 29 Oct 2024 22:07:10 +0800
Subject: [PATCH 2/2] fix log range in 1.10

---
 docs/iso-sens.jl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/docs/iso-sens.jl b/docs/iso-sens.jl
index cc3d389..4e78718 100644
--- a/docs/iso-sens.jl
+++ b/docs/iso-sens.jl
@@ -19,7 +19,7 @@ alg = Rodas5()
 callback = TerminateSteadyState()
 
 # Log scale for ISO concentration
-iso = logrange(1e-5μM, 10μM, 101)
+iso = exp10.(range(log10(1e-5μM), log10(10μM), length=101))
 
 #---
 prob_func = (prob, i, repeat) -> begin