duplicate 'row.names' error

[aboyd003]

The following lines of code cause "Error in .rowNamesDF<-(x, value = value) :
duplicate 'row.names' are not allowed." As far as I can see, these lines are not particularly essential to the functioning of the script. Do you foresee any problems if I run the script with these lines commented out?

message("processing flags") ## We will process the flags in R ## (an alternative is multiple scanBam calls...) bam$flag <- bam$flag %% 256

[lcodo]

AMBoyd, This lines look like they are filtering the reads by quality, so there is no much trouble if you simply comment it as you are suggesting. Also, you can edit the module and import the reads using alternative methods, like "readAlignments", a function faster than the method currently in use. I hope it helps you, Laia El 19/5/20 a las 23:47, AMBoyd escribió:

The following lines of code cause "Error in |.rowNamesDF<-|(x, value = value) : duplicate 'row.names' are not allowed." As far as I can see, these lines are not particularly essential to the functioning of the script. Do you foresee any problems if I run the script with these lines commented out? |message("processing flags") ## We will process the flags in R ## (an alternative is multiple scanBam calls...) bam$flag <- bam$flag %% 256| — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AE2EYXCDQ5HBG4FAMVJUYWTRSL47FANCNFSM4NFMBVFA>.

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