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no method or default for coercing “GRanges” to “RangedData” #2

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zhuqingquan5510 opened this issue Apr 14, 2022 · 1 comment

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@zhuqingquan5510
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hi
when i ran the script for nucleosome calling :
Rscript ~/github/nucleosome_dynamics/bin/nucleR.R --input B73-ck-high-150bp-2KU-withoutConting.RData --output B73-ck-high-150bp-2KU-withoutConting.gff --type paired

a bug appeared:

WARNING: ignoring environment value of R_HOME
loading data
filtering duplicated reads
Error in as(x, "RangedData") :
no method or default for coercing “GRanges” to “RangedData”
Calls: filterDuplReads -> filterDuplReads -> as
Execution halted

i wonder why .thanks

@sidkalra512
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I am getting the same error.
How to resolve this?
Screen Shot 2023-07-24 at 10 13 42 PM

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