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Hi Phaedra,
reading in the junctions from STAR threw me for the first few minutes so I wrote this little wrapper function to make it easier:
SCANVIS.read.STAR <- function(sj_file){ as.matrix( readr::read_tsv( sj_file, col_names = c("chr","start","end","strand", "intron.motif", "is.annotated", "uniq.reads", "multi.reads", "max.overhang" ) ) ) }
I hope that's useful!
Jack
The text was updated successfully, but these errors were encountered:
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Hi Phaedra,
reading in the junctions from STAR threw me for the first few minutes so I wrote this little wrapper function to make it easier:
SCANVIS.read.STAR <- function(sj_file){
as.matrix(
readr::read_tsv(
sj_file,
col_names = c("chr","start","end","strand", "intron.motif", "is.annotated", "uniq.reads", "multi.reads", "max.overhang" )
)
)
}
I hope that's useful!
Jack
The text was updated successfully, but these errors were encountered: