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Issue in installation #4

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VilainLab opened this issue Sep 9, 2020 · 1 comment
Open

Issue in installation #4

VilainLab opened this issue Sep 9, 2020 · 1 comment

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@VilainLab
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Hi,
I am getting the following error while installing the tool:
devtools::install_github("nygenome/SCANVIS")
Downloading GitHub repo nygenome/SCANVIS@HEAD
Skipping 1 packages not available: Imports: IRanges
√ checking for file 'C:\Users\Vilain Lab\AppData\Local\Temp\Rtmp2zJyOu\remotes2f502c65c7b\nygenome-SCANVIS-921ab15/DESCRIPTION'

  • preparing 'SCANVIS':
    E checking DESCRIPTION meta-information ...
    Malformed Depends or Suggests or Imports or Enhances field.
    Offending entries:
    Imports: IRanges
    Entries must be names of packages optionally followed by '<=' or '>=',
    white space, and a valid version number in parentheses.

    See section 'The DESCRIPTION file' in the 'Writing R Extensions'
    manual.

Error: Failed to install 'SCANVIS' from GitHub:
System command 'Rcmd.exe' failed, exit status: 1, stdout + stderr (last 10 lines):
E> * checking DESCRIPTION meta-information ... ERROR
E> Malformed Depends or Suggests or Imports or Enhances field.
E> Offending entries:
E> Imports: IRanges
E> Entries must be names of packages optionally followed by '<=' or '>=',
E> white space, and a valid version number in parentheses.
E>
E> See section 'The DESCRIPTION file' in the 'Writing R Extensions'
E> manual.
E>

Please let me know in case you have any other questions.

Thanks,
Surajit

@heathergeiger
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I was able to reproduce your error. We have been meaning to update the documentation on here, as Bioconductor is a more recent source to download this software.

See here to try installing using Bioconductor rather than from this Github: https://bioconductor.org/packages/release/bioc/html/SCANVIS.html

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