From c24fc4a55fafd367e40e3fafa9a585a8ed0460c8 Mon Sep 17 00:00:00 2001 From: Giuseppe Narzisi Date: Sat, 30 Sep 2017 14:21:01 -0400 Subject: [PATCH] Update readme with bioRxiv citation; update version number 1.0.1 --- README.md | 5 ++++- src/Lancet.hh | 2 +- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 5ab784ae..c1a6bb55 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,10 @@ lancet Lancet is a somatic variant caller (SNVs and indels) for short read data. Lancet uses a localized micro-assembly strategy to detect somatic mutation with high sensitivity and accuracy on a tumor/normal pair. Lancet is based on the colored de Bruijn graph assembly paradigm where tumor and normal reads are jointly analyzed within the same graph. On-the-fly repeat composition analysis and self-tuning k-mer strategy are used together to increase specificity in regions characterized by low complexity sequences. Lancet requires the raw reads to be aligned with BWA (See [BWA](http://bio-bwa.sourceforge.net/bwa.shtml) description for more info). Lancet is implemented in C++. -* Version: 1.0.0 + +Narzisi G, Corvelo A, Arora K, Bergmann E, Shah M, Musunuri R, Emde AK, Robine N, Vacic V, Zody MC. *Lancet: genome-wide somatic variant calling using localized colored DeBruijn graphs.* (2017) bioRxiv 196311; doi: [https://doi.org/10.1101/196311](https://doi.org/10.1101/196311) + +* Version: 1.0.1 * Author: Giuseppe Narzisi, [New York Genome Center](https://www.nygenome.org) Lancet is freely available for academic and non-commercial research purposes ([`LICENSE.txt`](https://github.com/nygenome/lancet/blob/master/LICENSE.txt)). diff --git a/src/Lancet.hh b/src/Lancet.hh index e0f13ef4..d00a92a1 100644 --- a/src/Lancet.hh +++ b/src/Lancet.hh @@ -26,7 +26,7 @@ #include "Microassembler.hh" -string VERSION = "1.0.0 (beta), September 18 2016"; +string VERSION = "1.0.1 (beta), September 30 2017"; /**** configuration parameters ****/ int NUM_THREADS = 1;