- Last modified: tor jan 25, 2024 11:54
- Sign: JN
Inspired by A Quick Guide to Organizing Computational Biology Projects
To initialize a new project, run these three steps:
$ git clone https://github.com/nylander/ptemplate.git project
$ cd project
$ sh bin/init.sh
This will create the following file structure:
ptemplate/
├── analyses
│ └── README.md
├── bin
│ ├── fasta2tab
│ ├── README.md
│ └── tab2fasta
├── data
│ └── README.md
├── doc
│ └── README.md
├──.editorconfig
├──.gitignore
├──.git/
├── old/
├── raw-data
│ └── README.md
├── README.md
├── results
│ └── README.md
├── src
│ ├── fasta_parser.pl
│ ├── fasta_parser.py
│ └── README.md
└── tmp/
Files are set under version control (git), except folders raw-data/, old/
and tmp/. This can be changed by editing the .gitignore file.
Furthermore, project-specific file-formatting settings for editors can
be set using the .editorconfig file. See more: https://editorconfig.org/.