Skip to content

Commit

Permalink
Update directly_supplies_drains
Browse files Browse the repository at this point in the history 
Updates label to 'directly supplies and drains', the domain is capillary (imported) and is a subproperty of 'supplies' and 'drains'
  • Loading branch information
@aleixpuigb
aleixpuigb committed Feb 2, 2024
1 parent 1be0efe commit 64cd28c
Show file tree
Hide file tree
Showing 3 changed files with 45 additions and 9 deletions.
39 changes: 37 additions & 2 deletions src/ontology/imports/uberon_import.owl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ Prefix(rdfs:=<http://www.w3.org/2000/01/rdf-schema#>)


Ontology(<http://purl.obolibrary.org/obo/ro/imports/uberon_import.owl>
<http://purl.obolibrary.org/obo/ro/releases/2024-02-01/imports/uberon_import.owl>
<http://purl.obolibrary.org/obo/ro/releases/2024-02-02/imports/uberon_import.owl>
Annotation(<http://purl.org/dc/elements/1.1/source> <http://dbpedia.org>)
Annotation(<http://purl.org/dc/elements/1.1/source> <http://palaeos.com>)
Annotation(<http://purl.org/dc/elements/1.1/source> <http://www.brain-map.org>)
Expand Down Expand Up @@ -68,7 +68,7 @@ Annotation(<http://purl.org/dc/elements/1.1/source> "PMID:16417468 Forgotten and
Annotation(<http://purl.org/dc/elements/1.1/source> "aggregates AAO from 13:04:2012")
Annotation(<http://purl.org/dc/elements/1.1/source> "aggregates TAO from 09:08:2012")
Annotation(<http://purl.org/dc/elements/1.1/source> "aggregates VSAO from 16:07:2012")
Annotation(owl:versionInfo "2024-02-01")
Annotation(owl:versionInfo "2024-02-02")

Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000004>))
Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000040>))
Expand All @@ -79,6 +79,7 @@ Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000465>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0000466>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001062>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001981>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0001982>))
Declaration(Class(<http://purl.obolibrary.org/obo/UBERON_0010000>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000116>))
Expand Down Expand Up @@ -314,6 +315,40 @@ AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_0001981> "
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0001981> <http://purl.obolibrary.org/obo/UBERON_0000061>)
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0001981> <http://purl.obolibrary.org/obo/UBERON_0010000>)

# Class: <http://purl.obolibrary.org/obo/UBERON_0001982> (capillary)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "ISBN:0073040584") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "Wikipedia:Capillary") Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "https://github.com/obophenotype/uberon/issues/137") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_0001982> "Any of the smallest blood vessels connecting arterioles with venules.")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000116> <http://purl.obolibrary.org/obo/UBERON_0001982> "not all sources agree capillary is a blood vessel - consider adopting EMAPA superclass of vascular element")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "AAO:0010252")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "BTO:0002045")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "CALOHA:TS-2006")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "EFO:0001906")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "EMAPA:35198")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "EV:0100035")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "FMA:63194")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "MA:0000065")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "MESH:D002196")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "NCIT:C12685")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "NLXANAT:090902")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "TAO:0005250")
AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#source> "ncithesaurus:Capillary") <http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "UMLS:C0935624")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "VHOG:0001253")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "Wikipedia:Capillary")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "XAO:0000116")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> <http://purl.obolibrary.org/obo/UBERON_0001982> "ZFA:0005250")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/UBERON_0001982> "blood capillary")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#hasExactSynonym> <http://purl.obolibrary.org/obo/UBERON_0001982> "capillary vessel")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#id> <http://purl.obolibrary.org/obo/UBERON_0001982> "UBERON:0001982")
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/UBERON_0001982> <http://purl.obolibrary.org/obo/uberon/core#efo_slim>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/UBERON_0001982> <http://purl.obolibrary.org/obo/uberon/core#human_reference_atlas>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/UBERON_0001982> <http://purl.obolibrary.org/obo/uberon/core#pheno_slim>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/UBERON_0001982> <http://purl.obolibrary.org/obo/uberon/core#uberon_slim>)
AnnotationAssertion(<http://www.geneontology.org/formats/oboInOwl#inSubset> <http://purl.obolibrary.org/obo/UBERON_0001982> <http://purl.obolibrary.org/obo/uberon/core#vertebrate_core>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UBERON_0001982> "capillary")
AnnotationAssertion(rdfs:seeAlso <http://purl.obolibrary.org/obo/UBERON_0001982> "https://github.com/obophenotype/uberon/issues/2186")
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0001982> <http://purl.obolibrary.org/obo/UBERON_0001981>)
SubClassOf(<http://purl.obolibrary.org/obo/UBERON_0001982> <http://purl.obolibrary.org/obo/UBERON_0010000>)

# Class: <http://purl.obolibrary.org/obo/UBERON_0010000> (multicellular anatomical structure)

AnnotationAssertion(Annotation(<http://www.geneontology.org/formats/oboInOwl#hasDbXref> "CARO:0010000") <http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/UBERON_0010000> "An anatomical structure that has more than one cell as a part.")
Expand Down
1 change: 1 addition & 0 deletions src/ontology/imports/uberon_terms.txt
View file
Original file line number Diff line number Diff line change
Expand Up @@ -5,3 +5,4 @@ UBERON:0000465
UBERON:0010000
UBERON:0000122
UBERON:0001981
UBERON:0001982
14 changes: 7 additions & 7 deletions src/ontology/ro-edit.owl
View file
Original file line number Diff line number Diff line change
Expand Up @@ -6813,16 +6813,16 @@ SubObjectPropertyOf(obo:RO_0020102 obo:RO_0002179)
ObjectPropertyDomain(obo:RO_0020102 obo:UBERON_0001981)
ObjectPropertyRange(obo:RO_0020102 obo:UBERON_0000061)

# Object Property: obo:RO_0020103 (vessel directly supplies blood to and drains blood from)
# Object Property: obo:RO_0020103 (directly supplies and drains)

AnnotationAssertion(obo:IAO_0000112 obo:RO_0020103 "alveolar capillary vessel directly supplies blood to and drains blood from alveolus")
AnnotationAssertion(obo:IAO_0000115 obo:RO_0020103 "x vessel directly supplies blood to and drains blood from y if and only if x is a blood vessel, y is an anatomical entity, and x directly supplies blood to y and directly drains blood from y.")
AnnotationAssertion(obo:IAO_0000112 obo:RO_0020103 "alveolar capillary directly supplies and drains some alveolus")
AnnotationAssertion(obo:IAO_0000115 obo:RO_0020103 "x directly supplies and drains y if and only if x is a capillary, y is an anatomical entity, and x directly supplies and drains y.")
AnnotationAssertion(terms:contributor obo:RO_0020103 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(terms:date obo:RO_0020103 "2024-02-01T10:09:59Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:RO_0020103 "vessel directly supplies blood to and drains blood from")
SubObjectPropertyOf(obo:RO_0020103 obo:RO_0020101)
SubObjectPropertyOf(obo:RO_0020103 obo:RO_0020102)
ObjectPropertyDomain(obo:RO_0020103 obo:UBERON_0001981)
AnnotationAssertion(rdfs:label obo:RO_0020103 "directly supplies and drains")
SubObjectPropertyOf(obo:RO_0020103 obo:RO_0002178)
SubObjectPropertyOf(obo:RO_0020103 obo:RO_0002179)
ObjectPropertyDomain(obo:RO_0020103 obo:UBERON_0001982)
ObjectPropertyRange(obo:RO_0020103 obo:UBERON_0000061)

# Object Property: obo:RO_0040035 (disease relationship)
Expand Down

0 comments on commit 64cd28c

Please sign in to comment.