diff --git a/src/ontology/imports/pato_import.owl b/src/ontology/imports/pato_import.owl index 64359663..56a973aa 100644 --- a/src/ontology/imports/pato_import.owl +++ b/src/ontology/imports/pato_import.owl @@ -7,7 +7,7 @@ Prefix(rdfs:=) Ontology( - + Annotation( ) Annotation( "An ontology of phenotypic qualities (properties, attributes or characteristics).") Annotation( ) @@ -16,12 +16,13 @@ Annotation( "quality") Annotation( "1.2") Annotation(owl:versionInfo "2023-05-18") -Annotation(owl:versionInfo "2023-08-16") +Annotation(owl:versionInfo "2024-02-27") Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -38,6 +39,7 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -70,6 +72,19 @@ AnnotationAssertion( "linear") SubClassOf( ) +# Class: (proportionality to) + +AnnotationAssertion(Annotation( "PATOC:nw") "A quality inhering in a bearer by virtue of the bearer's magnitude in respect to a related entity.") +AnnotationAssertion( "proportion") +AnnotationAssertion( "proportionality") +AnnotationAssertion( "quotient") +AnnotationAssertion( "ratio") +AnnotationAssertion( "rate") +AnnotationAssertion( "PATO:0001470") +AnnotationAssertion(rdfs:comment "Examples: height to weight; brain size to body size. These could all be children of proportionality. Proportions can be measured as ratios. Some measures may be dimensionless. Not all ratios measure proportionality, eg m/s measures velocity which is not a proportion in the sense defined above, it is a quality in its own right.") +AnnotationAssertion(rdfs:label "proportionality to") +SubClassOf( ) + # Class: (laminar) AnnotationAssertion(Annotation( "PATOC:GVG") "A quality inhering in a bearer by virtue of the bearer's processing the form of a thin plate sheet or layer.") diff --git a/src/ontology/imports/pato_terms.txt b/src/ontology/imports/pato_terms.txt index ce1ec8e4..905465c0 100644 --- a/src/ontology/imports/pato_terms.txt +++ b/src/ontology/imports/pato_terms.txt @@ -1,4 +1,5 @@ PATO:0002124 PATO:0001199 PATO:0000402 -PATO:0000001 \ No newline at end of file +PATO:0000001 +PATO:0001470 diff --git a/src/ontology/ro-edit.owl b/src/ontology/ro-edit.owl index 6018f0d5..3514946b 100644 --- a/src/ontology/ro-edit.owl +++ b/src/ontology/ro-edit.owl @@ -603,6 +603,8 @@ Declaration(ObjectProperty(obo:RO_0019501)) Declaration(ObjectProperty(obo:RO_0020101)) Declaration(ObjectProperty(obo:RO_0020102)) Declaration(ObjectProperty(obo:RO_0020103)) +Declaration(ObjectProperty(obo:RO_0020202)) +Declaration(ObjectProperty(obo:RO_0020203)) Declaration(ObjectProperty(obo:RO_0040035)) Declaration(ObjectProperty(obo:RO_0040036)) Declaration(ObjectProperty(obo:RO_HOM0000000)) @@ -6834,6 +6836,26 @@ SubObjectPropertyOf(obo:RO_0020103 obo:RO_0002179) ObjectPropertyDomain(obo:RO_0020103 obo:UBERON_0001982) ObjectPropertyRange(obo:RO_0020103 obo:UBERON_0000061) +# Object Property: obo:RO_0020202 (has numerator) + +AnnotationAssertion(Annotation(terms:contributor "https://orcid.org/0000-0002-8280-0487") obo:IAO_0000115 obo:RO_0020202 "A relationship between a ratio or proportion and its dividend.") +AnnotationAssertion(oboInOwl:created_by obo:RO_0020202 ) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:RO_0020202 "has dividend") +AnnotationAssertion(rdfs:label obo:RO_0020202 "has numerator") +SubObjectPropertyOf(obo:RO_0020202 obo:BFO_0000051) +ObjectPropertyDomain(obo:RO_0020202 obo:PATO_0001470) +ObjectPropertyRange(obo:RO_0020202 obo:PATO_0000001) + +# Object Property: obo:RO_0020203 (has denominator) + +AnnotationAssertion(Annotation(terms:contributor "https://orcid.org/0000-0002-8280-0487") obo:IAO_0000115 obo:RO_0020203 "A relationship between a ratio or proportion and its divisor.") +AnnotationAssertion(oboInOwl:created_by obo:RO_0020203 ) +AnnotationAssertion(oboInOwl:hasExactSynonym obo:RO_0020203 "has divisor") +AnnotationAssertion(rdfs:label obo:RO_0020203 "has denominator") +SubObjectPropertyOf(obo:RO_0020203 obo:BFO_0000051) +ObjectPropertyDomain(obo:RO_0020203 obo:PATO_0001470) +ObjectPropertyRange(obo:RO_0020203 obo:PATO_0000001) + # Object Property: obo:RO_0040035 (disease relationship) AnnotationAssertion(obo:IAO_0000115 obo:RO_0040035 "This relation groups relations between diseases and any other kind of entity.") diff --git a/src/ontology/ro-idranges.owl b/src/ontology/ro-idranges.owl index bd4f0128..96ff7352 100644 --- a/src/ontology/ro-idranges.owl +++ b/src/ontology/ro-idranges.owl @@ -114,4 +114,8 @@ EquivalentTo: xsd:integer[> 17500 , <= 18000] Datatype: idrange:26 Annotations: allocatedto: "Aleix Puig" -EquivalentTo: xsd:integer[> 20100 , <= 20200] \ No newline at end of file +EquivalentTo: xsd:integer[> 20100 , <= 20200] + +Datatype: idrange:27 +Annotations: allocatedto: "Ray Stefancsik" +EquivalentTo: xsd:integer[> 20201 , <= 20300]